Gene annotation and prediction of SNP damaging effect
Paste input data here: ##gvf-version 1.05 ##individual-id ID=miller1;Gender=male ##genome-build hg18 ##sequence-region chr16 1 88655725 chr16 SAMtools SNV 45325 45325 12 + . ID=chr16:SAMtools:SNV:45325;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 45444 45444 51 + . ID=chr16:SAMtools:SNV:45444;Variant_seq=T;Reference_seq=C;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 47275 47275 15 + . ID=chr16:SAMtools:SNV:47275;Variant_seq=G;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 48585 48585 24 + . ID=chr16:SAMtools:SNV:48585;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 49671 49671 27 + . ID=chr16:SAMtools:SNV:49671;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 50165 50165 24 + . ID=chr16:SAMtools:SNV:50165;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 54535 54535 9 + . ID=chr16:SAMtools:SNV:54535;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 163706 163706 6 + . ID=chr16:SAMtools:SNV:163706;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 287185 287185 23 + . ID=chr16:SAMtools:SNV:287185;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 336265 336265 53 + . ID=chr16:SAMtools:SNV:336265;Variant_seq=A,G;Reference_seq=A;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 389660 389660 32 + . ID=chr16:SAMtools:SNV:389660;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 510558 510558 41 + . ID=chr16:SAMtools:SNV:510558;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 510624 510624 65 + . ID=chr16:SAMtools:SNV:510624;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 570026 570026 6 + . ID=chr16:SAMtools:SNV:570026;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 570090 570090 27 + . ID=chr16:SAMtools:SNV:570090;Variant_seq=T;Reference_seq=C;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 573126 573126 21 + . ID=chr16:SAMtools:SNV:573126;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 608444 608444 9 + . ID=chr16:SAMtools:SNV:608444;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 659643 659643 64 + . ID=chr16:SAMtools:SNV:659643;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 675795 675795 23 + . ID=chr16:SAMtools:SNV:675795;Variant_seq=A,G;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 686915 686915 36 + . ID=chr16:SAMtools:SNV:686915;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 726195 726195 24 + . ID=chr16:SAMtools:SNV:726195;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 756295 756295 12 + . ID=chr16:SAMtools:SNV:756295;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 776993 776993 22 + . ID=chr16:SAMtools:SNV:776993;Variant_seq=C,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 847962 847962 25 + . ID=chr16:SAMtools:SNV:847962;Variant_seq=A;Reference_seq=C;Total_reads=60;Genotype=homozygous; chr16 SAMtools SNV 848239 848239 16 + . ID=chr16:SAMtools:SNV:848239;Variant_seq=A,C;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 848349 848349 12 + . ID=chr16:SAMtools:SNV:848349;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 1015475 1015475 34 + . ID=chr16:SAMtools:SNV:1015475;Variant_seq=C,T;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 1215136 1215136 12 + . ID=chr16:SAMtools:SNV:1215136;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 1304141 1304141 9 + . ID=chr16:SAMtools:SNV:1304141;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 1304282 1304282 15 + . ID=chr16:SAMtools:SNV:1304282;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 1310304 1310304 9 + . ID=chr16:SAMtools:SNV:1310304;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1310310 1310310 9 + . ID=chr16:SAMtools:SNV:1310310;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1314657 1314657 12 + . ID=chr16:SAMtools:SNV:1314657;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1314819 1314819 6 + . ID=chr16:SAMtools:SNV:1314819;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 1332221 1332221 57 + . ID=chr16:SAMtools:SNV:1332221;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 1334431 1334431 6 + . ID=chr16:SAMtools:SNV:1334431;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1359948 1359948 18 + . ID=chr16:SAMtools:SNV:1359948;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 1419251 1419251 9 + . ID=chr16:SAMtools:SNV:1419251;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1439378 1439378 21 + . ID=chr16:SAMtools:SNV:1439378;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 1443880 1443880 18 + . ID=chr16:SAMtools:SNV:1443880;Variant_seq=A;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 1444438 1444438 30 + . ID=chr16:SAMtools:SNV:1444438;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 1445933 1445933 26 + . ID=chr16:SAMtools:SNV:1445933;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 1450635 1450635 21 + . ID=chr16:SAMtools:SNV:1450635;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 1451759 1451759 9 + . ID=chr16:SAMtools:SNV:1451759;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 1476536 1476536 9 + . ID=chr16:SAMtools:SNV:1476536;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 1478364 1478364 12 + . ID=chr16:SAMtools:SNV:1478364;Variant_seq=A;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 1817699 1817699 24 + . ID=chr16:SAMtools:SNV:1817699;Variant_seq=C,G;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 1829190 1829190 36 + . ID=chr16:SAMtools:SNV:1829190;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 1834853 1834853 38 + . ID=chr16:SAMtools:SNV:1834853;Variant_seq=C,G;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 1834913 1834913 12 + . ID=chr16:SAMtools:SNV:1834913;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 1934744 1934744 27 + . ID=chr16:SAMtools:SNV:1934744;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 1934750 1934750 22 + . ID=chr16:SAMtools:SNV:1934750;Variant_seq=A,C;Reference_seq=A;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 1951127 1951127 36 + . ID=chr16:SAMtools:SNV:1951127;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 1964132 1964132 37 + . ID=chr16:SAMtools:SNV:1964132;Variant_seq=C,T;Reference_seq=T;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 1964356 1964356 35 + . ID=chr16:SAMtools:SNV:1964356;Variant_seq=G,T;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 1975763 1975763 35 + . ID=chr16:SAMtools:SNV:1975763;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 1975785 1975785 39 + . ID=chr16:SAMtools:SNV:1975785;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 2060403 2060403 47 + . ID=chr16:SAMtools:SNV:2060403;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 2163143 2163143 23 + . ID=chr16:SAMtools:SNV:2163143;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 2245540 2245540 12 + . ID=chr16:SAMtools:SNV:2245540;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 2425897 2425897 30 + . ID=chr16:SAMtools:SNV:2425897;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 2426999 2426999 18 + . ID=chr16:SAMtools:SNV:2426999;Variant_seq=T;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 2427421 2427421 9 + . ID=chr16:SAMtools:SNV:2427421;Variant_seq=T;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 2428212 2428212 15 + . ID=chr16:SAMtools:SNV:2428212;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 2429534 2429534 18 + . ID=chr16:SAMtools:SNV:2429534;Variant_seq=G;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 2433624 2433624 70 + . ID=chr16:SAMtools:SNV:2433624;Variant_seq=C,T;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 2440072 2440072 12 + . ID=chr16:SAMtools:SNV:2440072;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 2752891 2752891 57 + . ID=chr16:SAMtools:SNV:2752891;Variant_seq=G;Reference_seq=A;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 2752940 2752940 100 + . ID=chr16:SAMtools:SNV:2752940;Variant_seq=A,C;Reference_seq=C;Total_reads=30;Genotype=heterozygous; chr16 SAMtools SNV 2753637 2753637 137 + . ID=chr16:SAMtools:SNV:2753637;Variant_seq=C,G;Reference_seq=G;Total_reads=28;Genotype=heterozygous; chr16 SAMtools SNV 2754163 2754163 5 + . ID=chr16:SAMtools:SNV:2754163;Variant_seq=A;Reference_seq=G;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 2755238 2755238 39 + . ID=chr16:SAMtools:SNV:2755238;Variant_seq=C;Reference_seq=A;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 2762175 2762175 9 + . ID=chr16:SAMtools:SNV:2762175;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 2811122 2811122 45 + . ID=chr16:SAMtools:SNV:2811122;Variant_seq=C;Reference_seq=T;Total_reads=24;Genotype=homozygous; chr16 SAMtools SNV 2811556 2811556 12 + . ID=chr16:SAMtools:SNV:2811556;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 2889249 2889249 12 + . ID=chr16:SAMtools:SNV:2889249;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3005636 3005636 15 + . ID=chr16:SAMtools:SNV:3005636;Variant_seq=G;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 3055629 3055629 18 + . ID=chr16:SAMtools:SNV:3055629;Variant_seq=C;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 3057355 3057355 77 + . ID=chr16:SAMtools:SNV:3057355;Variant_seq=A,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 3106619 3106619 53 + . ID=chr16:SAMtools:SNV:3106619;Variant_seq=C,G;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 3194471 3194471 27 + . ID=chr16:SAMtools:SNV:3194471;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 3194973 3194973 51 + . ID=chr16:SAMtools:SNV:3194973;Variant_seq=C;Reference_seq=T;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 3222606 3222606 62 + . ID=chr16:SAMtools:SNV:3222606;Variant_seq=C;Reference_seq=T;Total_reads=31;Genotype=homozygous; chr16 SAMtools SNV 3223910 3223910 15 + . ID=chr16:SAMtools:SNV:3223910;Variant_seq=G;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 3236430 3236430 33 + . ID=chr16:SAMtools:SNV:3236430;Variant_seq=A;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 3236617 3236617 15 + . ID=chr16:SAMtools:SNV:3236617;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 3237074 3237074 33 + . ID=chr16:SAMtools:SNV:3237074;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 3237176 3237176 30 + . ID=chr16:SAMtools:SNV:3237176;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 3237182 3237182 30 + . ID=chr16:SAMtools:SNV:3237182;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 3238866 3238866 15 + . ID=chr16:SAMtools:SNV:3238866;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 3278344 3278344 21 + . ID=chr16:SAMtools:SNV:3278344;Variant_seq=C;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 3279436 3279436 12 + . ID=chr16:SAMtools:SNV:3279436;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3302954 3302954 18 + . ID=chr16:SAMtools:SNV:3302954;Variant_seq=G;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 3304868 3304868 3 + . ID=chr16:SAMtools:SNV:3304868;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3307062 3307062 32 + . ID=chr16:SAMtools:SNV:3307062;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 3307230 3307230 24 + . ID=chr16:SAMtools:SNV:3307230;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 3345987 3345987 68 + . ID=chr16:SAMtools:SNV:3345987;Variant_seq=A,G;Reference_seq=G;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 3345995 3345995 51 + . ID=chr16:SAMtools:SNV:3345995;Variant_seq=G;Reference_seq=A;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 3346388 3346388 12 + . ID=chr16:SAMtools:SNV:3346388;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 3346517 3346517 58 + . ID=chr16:SAMtools:SNV:3346517;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 3374700 3374700 37 + . ID=chr16:SAMtools:SNV:3374700;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 3426237 3426237 36 + . ID=chr16:SAMtools:SNV:3426237;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 3426286 3426286 15 + . ID=chr16:SAMtools:SNV:3426286;Variant_seq=A;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 3430923 3430923 34 + . ID=chr16:SAMtools:SNV:3430923;Variant_seq=C,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 3431210 3431210 9 + . ID=chr16:SAMtools:SNV:3431210;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3661774 3661774 23 + . ID=chr16:SAMtools:SNV:3661774;Variant_seq=C,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 3955730 3955730 9 + . ID=chr16:SAMtools:SNV:3955730;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3956677 3956677 12 + . ID=chr16:SAMtools:SNV:3956677;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 3967424 3967424 24 + . ID=chr16:SAMtools:SNV:3967424;Variant_seq=T;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 3967750 3967750 9 + . ID=chr16:SAMtools:SNV:3967750;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 3979142 3979142 72 + . ID=chr16:SAMtools:SNV:3979142;Variant_seq=G;Reference_seq=A;Total_reads=26;Genotype=homozygous; chr16 SAMtools SNV 3982050 3982050 6 + . ID=chr16:SAMtools:SNV:3982050;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 3983293 3983293 18 + . ID=chr16:SAMtools:SNV:3983293;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 3983702 3983702 18 + . ID=chr16:SAMtools:SNV:3983702;Variant_seq=C;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 4104338 4104338 87 + . ID=chr16:SAMtools:SNV:4104338;Variant_seq=C,T;Reference_seq=C;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 4326815 4326815 12 + . ID=chr16:SAMtools:SNV:4326815;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4395676 4395676 9 + . ID=chr16:SAMtools:SNV:4395676;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 4424329 4424329 96 + . ID=chr16:SAMtools:SNV:4424329;Variant_seq=A,G;Reference_seq=A;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 4424397 4424397 70 + . ID=chr16:SAMtools:SNV:4424397;Variant_seq=A,T;Reference_seq=A;Total_reads=23;Genotype=heterozygous; chr16 SAMtools SNV 4424614 4424614 36 + . ID=chr16:SAMtools:SNV:4424614;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 4434550 4434550 34 + . ID=chr16:SAMtools:SNV:4434550;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 4438487 4438487 12 + . ID=chr16:SAMtools:SNV:4438487;Variant_seq=T;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4438534 4438534 39 + . ID=chr16:SAMtools:SNV:4438534;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 4456093 4456093 9 + . ID=chr16:SAMtools:SNV:4456093;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4459141 4459141 12 + . ID=chr16:SAMtools:SNV:4459141;Variant_seq=G;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 4496912 4496912 63 + . ID=chr16:SAMtools:SNV:4496912;Variant_seq=A,G;Reference_seq=G;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 4552838 4552838 12 + . ID=chr16:SAMtools:SNV:4552838;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4692135 4692135 22 + . ID=chr16:SAMtools:SNV:4692135;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 4720263 4720263 5 + . ID=chr16:SAMtools:SNV:4720263;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 4727988 4727988 36 + . ID=chr16:SAMtools:SNV:4727988;Variant_seq=A;Reference_seq=G;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 4730274 4730274 12 + . ID=chr16:SAMtools:SNV:4730274;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4736596 4736596 12 + . ID=chr16:SAMtools:SNV:4736596;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4737227 4737227 15 + . ID=chr16:SAMtools:SNV:4737227;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4752210 4752210 18 + . ID=chr16:SAMtools:SNV:4752210;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 4769603 4769603 39 + . ID=chr16:SAMtools:SNV:4769603;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 4807566 4807566 86 + . ID=chr16:SAMtools:SNV:4807566;Variant_seq=A,G;Reference_seq=A;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 4860413 4860413 58 + . ID=chr16:SAMtools:SNV:4860413;Variant_seq=C,T;Reference_seq=T;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 4873302 4873302 9 + . ID=chr16:SAMtools:SNV:4873302;Variant_seq=T;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4873940 4873940 30 + . ID=chr16:SAMtools:SNV:4873940;Variant_seq=C;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 4874550 4874550 12 + . ID=chr16:SAMtools:SNV:4874550;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4874565 4874565 12 + . ID=chr16:SAMtools:SNV:4874565;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4877340 4877340 24 + . ID=chr16:SAMtools:SNV:4877340;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 4878161 4878161 39 + . ID=chr16:SAMtools:SNV:4878161;Variant_seq=G;Reference_seq=T;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 4878281 4878281 30 + . ID=chr16:SAMtools:SNV:4878281;Variant_seq=C;Reference_seq=T;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 4878322 4878322 30 + . ID=chr16:SAMtools:SNV:4878322;Variant_seq=T;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 4880388 4880388 9 + . ID=chr16:SAMtools:SNV:4880388;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4881663 4881663 15 + . ID=chr16:SAMtools:SNV:4881663;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 4884304 4884304 6 + . ID=chr16:SAMtools:SNV:4884304;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4884519 4884519 6 + . ID=chr16:SAMtools:SNV:4884519;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4885222 4885222 12 + . ID=chr16:SAMtools:SNV:4885222;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 4885986 4885986 12 + . ID=chr16:SAMtools:SNV:4885986;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 4892599 4892599 12 + . ID=chr16:SAMtools:SNV:4892599;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 5015543 5015543 6 + . ID=chr16:SAMtools:SNV:5015543;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 5063271 5063271 54 + . ID=chr16:SAMtools:SNV:5063271;Variant_seq=T;Reference_seq=C;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 5065366 5065366 36 + . ID=chr16:SAMtools:SNV:5065366;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 5067336 5067336 30 + . ID=chr16:SAMtools:SNV:5067336;Variant_seq=A;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 5085475 5085475 31 + . ID=chr16:SAMtools:SNV:5085475;Variant_seq=C,T;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 7569842 7569842 100 + . ID=chr16:SAMtools:SNV:7569842;Variant_seq=A,G;Reference_seq=A;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 7570144 7570144 12 + . ID=chr16:SAMtools:SNV:7570144;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 7666692 7666692 36 + . ID=chr16:SAMtools:SNV:7666692;Variant_seq=G;Reference_seq=A;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 7666758 7666758 90 + . ID=chr16:SAMtools:SNV:7666758;Variant_seq=A,G;Reference_seq=A;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 7699165 7699165 27 + . ID=chr16:SAMtools:SNV:7699165;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 7699207 7699207 27 + . ID=chr16:SAMtools:SNV:7699207;Variant_seq=T;Reference_seq=G;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 8737216 8737216 21 + . ID=chr16:SAMtools:SNV:8737216;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 8747455 8747455 117 + . ID=chr16:SAMtools:SNV:8747455;Variant_seq=A,G;Reference_seq=A;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 8747526 8747526 73 + . ID=chr16:SAMtools:SNV:8747526;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 8749461 8749461 40 + . ID=chr16:SAMtools:SNV:8749461;Variant_seq=C,T;Reference_seq=T;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 8766081 8766081 15 + . ID=chr16:SAMtools:SNV:8766081;Variant_seq=A;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 8770007 8770007 21 + . ID=chr16:SAMtools:SNV:8770007;Variant_seq=A;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 8770093 8770093 24 + . ID=chr16:SAMtools:SNV:8770093;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 8770457 8770457 18 + . ID=chr16:SAMtools:SNV:8770457;Variant_seq=T;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 8797129 8797129 18 + . ID=chr16:SAMtools:SNV:8797129;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 8798075 8798075 15 + . ID=chr16:SAMtools:SNV:8798075;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 8856475 8856475 18 + . ID=chr16:SAMtools:SNV:8856475;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 8859614 8859614 9 + . ID=chr16:SAMtools:SNV:8859614;Variant_seq=A;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 8859749 8859749 21 + . ID=chr16:SAMtools:SNV:8859749;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 8895689 8895689 21 + . ID=chr16:SAMtools:SNV:8895689;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 8895739 8895739 12 + . ID=chr16:SAMtools:SNV:8895739;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 8896904 8896904 36 + . ID=chr16:SAMtools:SNV:8896904;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 8898181 8898181 9 + . ID=chr16:SAMtools:SNV:8898181;Variant_seq=A;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 8898691 8898691 21 + . ID=chr16:SAMtools:SNV:8898691;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 8902064 8902064 27 + . ID=chr16:SAMtools:SNV:8902064;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 8907586 8907586 12 + . ID=chr16:SAMtools:SNV:8907586;Variant_seq=C;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 8912065 8912065 87 + . ID=chr16:SAMtools:SNV:8912065;Variant_seq=A;Reference_seq=C;Total_reads=32;Genotype=homozygous; chr16 SAMtools SNV 8921851 8921851 12 + . ID=chr16:SAMtools:SNV:8921851;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 8921935 8921935 30 + . ID=chr16:SAMtools:SNV:8921935;Variant_seq=G;Reference_seq=T;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 8922429 8922429 27 + . ID=chr16:SAMtools:SNV:8922429;Variant_seq=G;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 8922753 8922753 12 + . ID=chr16:SAMtools:SNV:8922753;Variant_seq=T;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 9094236 9094236 9 + . ID=chr16:SAMtools:SNV:9094236;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 10432458 10432458 134 + . ID=chr16:SAMtools:SNV:10432458;Variant_seq=G,T;Reference_seq=G;Total_reads=37;Genotype=heterozygous; chr16 SAMtools SNV 10435114 10435114 22 + . ID=chr16:SAMtools:SNV:10435114;Variant_seq=A,C;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 10539413 10539413 45 + . ID=chr16:SAMtools:SNV:10539413;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 10748348 10748348 42 + . ID=chr16:SAMtools:SNV:10748348;Variant_seq=C,G;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 10758277 10758277 24 + . ID=chr16:SAMtools:SNV:10758277;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 10769415 10769415 132 + . ID=chr16:SAMtools:SNV:10769415;Variant_seq=C,T;Reference_seq=T;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 10878403 10878403 6 + . ID=chr16:SAMtools:SNV:10878403;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 10900216 10900216 42 + . ID=chr16:SAMtools:SNV:10900216;Variant_seq=G;Reference_seq=T;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 10903351 10903351 12 + . ID=chr16:SAMtools:SNV:10903351;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 10903434 10903434 6 + . ID=chr16:SAMtools:SNV:10903434;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 10903833 10903833 56 + . ID=chr16:SAMtools:SNV:10903833;Variant_seq=C,G;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 10903950 10903950 84 + . ID=chr16:SAMtools:SNV:10903950;Variant_seq=G,T;Reference_seq=G;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 10910405 10910405 37 + . ID=chr16:SAMtools:SNV:10910405;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 10910428 10910428 33 + . ID=chr16:SAMtools:SNV:10910428;Variant_seq=G;Reference_seq=A;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 10910602 10910602 54 + . ID=chr16:SAMtools:SNV:10910602;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 10911651 10911651 21 + . ID=chr16:SAMtools:SNV:10911651;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 10917088 10917088 49 + . ID=chr16:SAMtools:SNV:10917088;Variant_seq=A,C;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 10917651 10917651 20 + . ID=chr16:SAMtools:SNV:10917651;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 10919670 10919670 18 + . ID=chr16:SAMtools:SNV:10919670;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 10923407 10923407 21 + . ID=chr16:SAMtools:SNV:10923407;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 10923546 10923546 26 + . ID=chr16:SAMtools:SNV:10923546;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 10924559 10924559 13 + . ID=chr16:SAMtools:SNV:10924559;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 11352217 11352217 56 + . ID=chr16:SAMtools:SNV:11352217;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 11557826 11557826 9 + . ID=chr16:SAMtools:SNV:11557826;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 11689083 11689083 23 + . ID=chr16:SAMtools:SNV:11689083;Variant_seq=A,C;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 11759855 11759855 43 + . ID=chr16:SAMtools:SNV:11759855;Variant_seq=A,C;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 11766842 11766842 62 + . ID=chr16:SAMtools:SNV:11766842;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 11842937 11842937 15 + . ID=chr16:SAMtools:SNV:11842937;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 11847891 11847891 33 + . ID=chr16:SAMtools:SNV:11847891;Variant_seq=C;Reference_seq=T;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 11966539 11966539 18 + . ID=chr16:SAMtools:SNV:11966539;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 11967664 11967664 18 + . ID=chr16:SAMtools:SNV:11967664;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 12004462 12004462 33 + . ID=chr16:SAMtools:SNV:12004462;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 12044085 12044085 23 + . ID=chr16:SAMtools:SNV:12044085;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 13933508 13933508 21 + . ID=chr16:SAMtools:SNV:13933508;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 13939021 13939021 18 + . ID=chr16:SAMtools:SNV:13939021;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 13946046 13946046 31 + . ID=chr16:SAMtools:SNV:13946046;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 14649886 14649886 32 + . ID=chr16:SAMtools:SNV:14649886;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 15023657 15023657 23 + . ID=chr16:SAMtools:SNV:15023657;Variant_seq=G,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 15035487 15035487 34 + . ID=chr16:SAMtools:SNV:15035487;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 15037441 15037441 53 + . ID=chr16:SAMtools:SNV:15037441;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 15042572 15042572 12 + . ID=chr16:SAMtools:SNV:15042572;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 15042770 15042770 9 + . ID=chr16:SAMtools:SNV:15042770;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 15064472 15064472 35 + . ID=chr16:SAMtools:SNV:15064472;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 15076261 15076261 86 + . ID=chr16:SAMtools:SNV:15076261;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 15095413 15095413 18 + . ID=chr16:SAMtools:SNV:15095413;Variant_seq=C,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 15516530 15516530 24 + . ID=chr16:SAMtools:SNV:15516530;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 15679102 15679102 63 + . ID=chr16:SAMtools:SNV:15679102;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 15718563 15718563 41 + . ID=chr16:SAMtools:SNV:15718563;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 15721134 15721134 70 + . ID=chr16:SAMtools:SNV:15721134;Variant_seq=A,G;Reference_seq=G;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 15721446 15721446 31 + . ID=chr16:SAMtools:SNV:15721446;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 15725642 15725642 41 + . ID=chr16:SAMtools:SNV:15725642;Variant_seq=A,C;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 15777302 15777302 61 + . ID=chr16:SAMtools:SNV:15777302;Variant_seq=C,T;Reference_seq=T;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 15780189 15780189 97 + . ID=chr16:SAMtools:SNV:15780189;Variant_seq=A,G;Reference_seq=G;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 15874725 15874725 45 + . ID=chr16:SAMtools:SNV:15874725;Variant_seq=A,C;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 15875121 15875121 43 + . ID=chr16:SAMtools:SNV:15875121;Variant_seq=G,T;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 15881106 15881106 31 + . ID=chr16:SAMtools:SNV:15881106;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 16158936 16158936 42 + . ID=chr16:SAMtools:SNV:16158936;Variant_seq=A;Reference_seq=G;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 16162696 16162696 9 + . ID=chr16:SAMtools:SNV:16162696;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 16164268 16164268 24 + . ID=chr16:SAMtools:SNV:16164268;Variant_seq=G;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 16174580 16174580 24 + . ID=chr16:SAMtools:SNV:16174580;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 16178858 16178858 21 + . ID=chr16:SAMtools:SNV:16178858;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 16179129 16179129 18 + . ID=chr16:SAMtools:SNV:16179129;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 16180009 16180009 21 + . ID=chr16:SAMtools:SNV:16180009;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 16180171 16180171 15 + . ID=chr16:SAMtools:SNV:16180171;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 16186364 16186364 6 + . ID=chr16:SAMtools:SNV:16186364;Variant_seq=T;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 16186370 16186370 6 + . ID=chr16:SAMtools:SNV:16186370;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 16188396 16188396 9 + . ID=chr16:SAMtools:SNV:16188396;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 16188508 16188508 18 + . ID=chr16:SAMtools:SNV:16188508;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 16188655 16188655 12 + . ID=chr16:SAMtools:SNV:16188655;Variant_seq=A;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 16191773 16191773 24 + . ID=chr16:SAMtools:SNV:16191773;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 17097541 17097541 5 + . ID=chr16:SAMtools:SNV:17097541;Variant_seq=G,T;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 17128924 17128924 18 + . ID=chr16:SAMtools:SNV:17128924;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 17129256 17129256 41 + . ID=chr16:SAMtools:SNV:17129256;Variant_seq=G,T;Reference_seq=T;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 17129402 17129402 49 + . ID=chr16:SAMtools:SNV:17129402;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 17135869 17135869 13 + . ID=chr16:SAMtools:SNV:17135869;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 18728692 18728692 24 + . ID=chr16:SAMtools:SNV:18728692;Variant_seq=C,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 18948992 18948992 27 + . ID=chr16:SAMtools:SNV:18948992;Variant_seq=C;Reference_seq=T;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 18963570 18963570 15 + . ID=chr16:SAMtools:SNV:18963570;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 18990722 18990722 93 + . ID=chr16:SAMtools:SNV:18990722;Variant_seq=G;Reference_seq=A;Total_reads=35;Genotype=homozygous; chr16 SAMtools SNV 18997063 18997063 6 + . ID=chr16:SAMtools:SNV:18997063;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 19141993 19141993 105 + . ID=chr16:SAMtools:SNV:19141993;Variant_seq=C,T;Reference_seq=C;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 19143703 19143703 16 + . ID=chr16:SAMtools:SNV:19143703;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 19379166 19379166 39 + . ID=chr16:SAMtools:SNV:19379166;Variant_seq=C;Reference_seq=T;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 19410713 19410713 9 + . ID=chr16:SAMtools:SNV:19410713;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 19411099 19411099 24 + . ID=chr16:SAMtools:SNV:19411099;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 19412783 19412783 9 + . ID=chr16:SAMtools:SNV:19412783;Variant_seq=C;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 19412907 19412907 12 + . ID=chr16:SAMtools:SNV:19412907;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 19413231 19413231 18 + . ID=chr16:SAMtools:SNV:19413231;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 19413252 19413252 27 + . ID=chr16:SAMtools:SNV:19413252;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 19413314 19413314 3 + . ID=chr16:SAMtools:SNV:19413314;Variant_seq=A;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 19416074 19416074 27 + . ID=chr16:SAMtools:SNV:19416074;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 19416084 19416084 27 + . ID=chr16:SAMtools:SNV:19416084;Variant_seq=G;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 19416834 19416834 36 + . ID=chr16:SAMtools:SNV:19416834;Variant_seq=T;Reference_seq=C;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 19423518 19423518 48 + . ID=chr16:SAMtools:SNV:19423518;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 19455248 19455248 51 + . ID=chr16:SAMtools:SNV:19455248;Variant_seq=G;Reference_seq=C;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 19460684 19460684 36 + . ID=chr16:SAMtools:SNV:19460684;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 19561201 19561201 67 + . ID=chr16:SAMtools:SNV:19561201;Variant_seq=C,T;Reference_seq=T;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 19570562 19570562 18 + . ID=chr16:SAMtools:SNV:19570562;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 19570770 19570770 36 + . ID=chr16:SAMtools:SNV:19570770;Variant_seq=C,T;Reference_seq=T;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 19587915 19587915 76 + . ID=chr16:SAMtools:SNV:19587915;Variant_seq=C,T;Reference_seq=C;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 19588047 19588047 47 + . ID=chr16:SAMtools:SNV:19588047;Variant_seq=C,T;Reference_seq=T;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 19682770 19682770 55 + . ID=chr16:SAMtools:SNV:19682770;Variant_seq=C,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 19791786 19791786 9 + . ID=chr16:SAMtools:SNV:19791786;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 20229926 20229926 27 + . ID=chr16:SAMtools:SNV:20229926;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 20229940 20229940 30 + . ID=chr16:SAMtools:SNV:20229940;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 20260257 20260257 9 + . ID=chr16:SAMtools:SNV:20260257;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 20278311 20278311 25 + . ID=chr16:SAMtools:SNV:20278311;Variant_seq=T;Reference_seq=C;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 20278317 20278317 54 + . ID=chr16:SAMtools:SNV:20278317;Variant_seq=T;Reference_seq=C;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 20278482 20278482 24 + . ID=chr16:SAMtools:SNV:20278482;Variant_seq=C;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 20278576 20278576 21 + . ID=chr16:SAMtools:SNV:20278576;Variant_seq=T;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 20284089 20284089 30 + . ID=chr16:SAMtools:SNV:20284089;Variant_seq=T;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 20284235 20284235 66 + . ID=chr16:SAMtools:SNV:20284235;Variant_seq=G;Reference_seq=A;Total_reads=23;Genotype=homozygous; chr16 SAMtools SNV 20284256 20284256 54 + . ID=chr16:SAMtools:SNV:20284256;Variant_seq=C;Reference_seq=T;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 20288548 20288548 14 + . ID=chr16:SAMtools:SNV:20288548;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 20293616 20293616 54 + . ID=chr16:SAMtools:SNV:20293616;Variant_seq=C;Reference_seq=T;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 20405276 20405276 9 + . ID=chr16:SAMtools:SNV:20405276;Variant_seq=C;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 20405580 20405580 18 + . ID=chr16:SAMtools:SNV:20405580;Variant_seq=G;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 20455835 20455835 9 + . ID=chr16:SAMtools:SNV:20455835;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 20459356 20459356 9 + . ID=chr16:SAMtools:SNV:20459356;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 20459576 20459576 48 + . ID=chr16:SAMtools:SNV:20459576;Variant_seq=T;Reference_seq=G;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 20555422 20555422 21 + . ID=chr16:SAMtools:SNV:20555422;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 20657545 20657545 24 + . ID=chr16:SAMtools:SNV:20657545;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 20657638 20657638 93 + . ID=chr16:SAMtools:SNV:20657638;Variant_seq=T;Reference_seq=C;Total_reads=35;Genotype=homozygous; chr16 SAMtools SNV 20658124 20658124 12 + . ID=chr16:SAMtools:SNV:20658124;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 20699689 20699689 72 + . ID=chr16:SAMtools:SNV:20699689;Variant_seq=C;Reference_seq=T;Total_reads=26;Genotype=homozygous; chr16 SAMtools SNV 20704009 20704009 21 + . ID=chr16:SAMtools:SNV:20704009;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 20718231 20718231 51 + . ID=chr16:SAMtools:SNV:20718231;Variant_seq=G;Reference_seq=A;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 20719182 20719182 27 + . ID=chr16:SAMtools:SNV:20719182;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 20731822 20731822 21 + . ID=chr16:SAMtools:SNV:20731822;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 20762810 20762810 33 + . ID=chr16:SAMtools:SNV:20762810;Variant_seq=G;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 20768398 20768398 18 + . ID=chr16:SAMtools:SNV:20768398;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 20780710 20780710 3 + . ID=chr16:SAMtools:SNV:20780710;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 20781268 20781268 24 + . ID=chr16:SAMtools:SNV:20781268;Variant_seq=G;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 20938398 20938398 12 + . ID=chr16:SAMtools:SNV:20938398;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 20941022 20941022 57 + . ID=chr16:SAMtools:SNV:20941022;Variant_seq=A,G;Reference_seq=G;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 20941087 20941087 60 + . ID=chr16:SAMtools:SNV:20941087;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 20976873 20976873 49 + . ID=chr16:SAMtools:SNV:20976873;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 20978889 20978889 30 + . ID=chr16:SAMtools:SNV:20978889;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 20979000 20979000 81 + . ID=chr16:SAMtools:SNV:20979000;Variant_seq=A,G;Reference_seq=G;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 20985943 20985943 27 + . ID=chr16:SAMtools:SNV:20985943;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 20986194 20986194 39 + . ID=chr16:SAMtools:SNV:20986194;Variant_seq=G,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 20989669 20989669 9 + . ID=chr16:SAMtools:SNV:20989669;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 21005483 21005483 58 + . ID=chr16:SAMtools:SNV:21005483;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 21016556 21016556 32 + . ID=chr16:SAMtools:SNV:21016556;Variant_seq=C,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 21030689 21030689 68 + . ID=chr16:SAMtools:SNV:21030689;Variant_seq=C,T;Reference_seq=C;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 21043978 21043978 54 + . ID=chr16:SAMtools:SNV:21043978;Variant_seq=G;Reference_seq=A;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 21059574 21059574 46 + . ID=chr16:SAMtools:SNV:21059574;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 21059575 21059575 41 + . ID=chr16:SAMtools:SNV:21059575;Variant_seq=A,G;Reference_seq=A;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 21064330 21064330 52 + . ID=chr16:SAMtools:SNV:21064330;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 21092885 21092885 31 + . ID=chr16:SAMtools:SNV:21092885;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 21098354 21098354 64 + . ID=chr16:SAMtools:SNV:21098354;Variant_seq=A,C;Reference_seq=A;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 21117507 21117507 31 + . ID=chr16:SAMtools:SNV:21117507;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 21124562 21124562 44 + . ID=chr16:SAMtools:SNV:21124562;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 21130173 21130173 56 + . ID=chr16:SAMtools:SNV:21130173;Variant_seq=A,C;Reference_seq=C;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 21560221 21560221 9 + . ID=chr16:SAMtools:SNV:21560221;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 21646874 21646874 44 + . ID=chr16:SAMtools:SNV:21646874;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 21646931 21646931 34 + . ID=chr16:SAMtools:SNV:21646931;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 21884263 21884263 53 + . ID=chr16:SAMtools:SNV:21884263;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 21890637 21890637 24 + . ID=chr16:SAMtools:SNV:21890637;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 21899623 21899623 18 + . ID=chr16:SAMtools:SNV:21899623;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 22167559 22167559 75 + . ID=chr16:SAMtools:SNV:22167559;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 22177368 22177368 18 + . ID=chr16:SAMtools:SNV:22177368;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 22237539 22237539 36 + . ID=chr16:SAMtools:SNV:22237539;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 22252692 22252692 15 + . ID=chr16:SAMtools:SNV:22252692;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 22986854 22986854 36 + . ID=chr16:SAMtools:SNV:22986854;Variant_seq=C;Reference_seq=T;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 22988135 22988135 34 + . ID=chr16:SAMtools:SNV:22988135;Variant_seq=A,C;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 22998479 22998479 31 + . ID=chr16:SAMtools:SNV:22998479;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 23128340 23128340 24 + . ID=chr16:SAMtools:SNV:23128340;Variant_seq=C;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 23128343 23128343 9 + . ID=chr16:SAMtools:SNV:23128343;Variant_seq=T;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 23128684 23128684 24 + . ID=chr16:SAMtools:SNV:23128684;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 23128739 23128739 15 + . ID=chr16:SAMtools:SNV:23128739;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 23128880 23128880 18 + . ID=chr16:SAMtools:SNV:23128880;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 23128908 23128908 18 + . ID=chr16:SAMtools:SNV:23128908;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 23130801 23130801 65 + . ID=chr16:SAMtools:SNV:23130801;Variant_seq=C,T;Reference_seq=T;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 23131225 23131225 44 + . ID=chr16:SAMtools:SNV:23131225;Variant_seq=C,G;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 23132018 23132018 25 + . ID=chr16:SAMtools:SNV:23132018;Variant_seq=G,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 23133485 23133485 64 + . ID=chr16:SAMtools:SNV:23133485;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 23134288 23134288 25 + . ID=chr16:SAMtools:SNV:23134288;Variant_seq=C,G;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 23267700 23267700 12 + . ID=chr16:SAMtools:SNV:23267700;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 23286980 23286980 6 + . ID=chr16:SAMtools:SNV:23286980;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 23297702 23297702 45 + . ID=chr16:SAMtools:SNV:23297702;Variant_seq=C;Reference_seq=G;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 23299131 23299131 94 + . ID=chr16:SAMtools:SNV:23299131;Variant_seq=A,T;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 23307695 23307695 19 + . ID=chr16:SAMtools:SNV:23307695;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 23307995 23307995 15 + . ID=chr16:SAMtools:SNV:23307995;Variant_seq=A;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 23311856 23311856 6 + . ID=chr16:SAMtools:SNV:23311856;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 23335559 23335559 28 + . ID=chr16:SAMtools:SNV:23335559;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 23414441 23414441 41 + . ID=chr16:SAMtools:SNV:23414441;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 23532964 23532964 30 + . ID=chr16:SAMtools:SNV:23532964;Variant_seq=T;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 23620162 23620162 9 + . ID=chr16:SAMtools:SNV:23620162;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 23629102 23629102 73 + . ID=chr16:SAMtools:SNV:23629102;Variant_seq=G,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 23629543 23629543 86 + . ID=chr16:SAMtools:SNV:23629543;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 23676211 23676211 35 + . ID=chr16:SAMtools:SNV:23676211;Variant_seq=C,T;Reference_seq=C;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 23676303 23676303 67 + . ID=chr16:SAMtools:SNV:23676303;Variant_seq=G,T;Reference_seq=T;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 23951177 23951177 34 + . ID=chr16:SAMtools:SNV:23951177;Variant_seq=C,G;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 24011829 24011829 100 + . ID=chr16:SAMtools:SNV:24011829;Variant_seq=A,G;Reference_seq=A;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 24073631 24073631 18 + . ID=chr16:SAMtools:SNV:24073631;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 24103790 24103790 30 + . ID=chr16:SAMtools:SNV:24103790;Variant_seq=A,T;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 24104683 24104683 12 + . ID=chr16:SAMtools:SNV:24104683;Variant_seq=T;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 24109959 24109959 54 + . ID=chr16:SAMtools:SNV:24109959;Variant_seq=C,T;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 24110116 24110116 36 + . ID=chr16:SAMtools:SNV:24110116;Variant_seq=G;Reference_seq=A;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 24474821 24474821 51 + . ID=chr16:SAMtools:SNV:24474821;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 24478258 24478258 34 + . ID=chr16:SAMtools:SNV:24478258;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 24490907 24490907 43 + . ID=chr16:SAMtools:SNV:24490907;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 24714666 24714666 73 + . ID=chr16:SAMtools:SNV:24714666;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 24741734 24741734 99 + . ID=chr16:SAMtools:SNV:24741734;Variant_seq=C,T;Reference_seq=C;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 24788653 24788653 15 + . ID=chr16:SAMtools:SNV:24788653;Variant_seq=C;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 24796147 24796147 77 + . ID=chr16:SAMtools:SNV:24796147;Variant_seq=C,T;Reference_seq=T;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 24809695 24809695 12 + . ID=chr16:SAMtools:SNV:24809695;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 24825549 24825549 80 + . ID=chr16:SAMtools:SNV:24825549;Variant_seq=C,T;Reference_seq=C;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 24887011 24887011 9 + . ID=chr16:SAMtools:SNV:24887011;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 24887690 24887690 30 + . ID=chr16:SAMtools:SNV:24887690;Variant_seq=A;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 25158931 25158931 89 + . ID=chr16:SAMtools:SNV:25158931;Variant_seq=C,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 27133938 27133938 36 + . ID=chr16:SAMtools:SNV:27133938;Variant_seq=G,T;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 27134669 27134669 37 + . ID=chr16:SAMtools:SNV:27134669;Variant_seq=G,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 27260731 27260731 15 + . ID=chr16:SAMtools:SNV:27260731;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 27260858 27260858 58 + . ID=chr16:SAMtools:SNV:27260858;Variant_seq=C,T;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 27263704 27263704 47 + . ID=chr16:SAMtools:SNV:27263704;Variant_seq=A,G;Reference_seq=A;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 27265599 27265599 12 + . ID=chr16:SAMtools:SNV:27265599;Variant_seq=C;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 27271187 27271187 18 + . ID=chr16:SAMtools:SNV:27271187;Variant_seq=C;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 27274835 27274835 15 + . ID=chr16:SAMtools:SNV:27274835;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 27277955 27277955 9 + . ID=chr16:SAMtools:SNV:27277955;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 27279450 27279450 21 + . ID=chr16:SAMtools:SNV:27279450;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 27281059 27281059 69 + . ID=chr16:SAMtools:SNV:27281059;Variant_seq=A,C;Reference_seq=C;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 27281416 27281416 21 + . ID=chr16:SAMtools:SNV:27281416;Variant_seq=G,T;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 27281465 27281465 21 + . ID=chr16:SAMtools:SNV:27281465;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 27281681 27281681 9 + . ID=chr16:SAMtools:SNV:27281681;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 27537162 27537162 30 + . ID=chr16:SAMtools:SNV:27537162;Variant_seq=C;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 27549750 27549750 33 + . ID=chr16:SAMtools:SNV:27549750;Variant_seq=G;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 27680402 27680402 21 + . ID=chr16:SAMtools:SNV:27680402;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 28507783 28507783 34 + . ID=chr16:SAMtools:SNV:28507783;Variant_seq=G,T;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 28510492 28510492 33 + . ID=chr16:SAMtools:SNV:28510492;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 28510513 28510513 22 + . ID=chr16:SAMtools:SNV:28510513;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 28525739 28525739 30 + . ID=chr16:SAMtools:SNV:28525739;Variant_seq=G;Reference_seq=A;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 28539086 28539086 15 + . ID=chr16:SAMtools:SNV:28539086;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 28753085 28753085 86 + . ID=chr16:SAMtools:SNV:28753085;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 28764320 28764320 22 + . ID=chr16:SAMtools:SNV:28764320;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 28813585 28813585 15 + . ID=chr16:SAMtools:SNV:28813585;Variant_seq=C;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 28823028 28823028 18 + . ID=chr16:SAMtools:SNV:28823028;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 29032025 29032025 18 + . ID=chr16:SAMtools:SNV:29032025;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 29032162 29032162 9 + . ID=chr16:SAMtools:SNV:29032162;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 29718820 29718820 15 + . ID=chr16:SAMtools:SNV:29718820;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 29814528 29814528 45 + . ID=chr16:SAMtools:SNV:29814528;Variant_seq=C,T;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 29900609 29900609 78 + . ID=chr16:SAMtools:SNV:29900609;Variant_seq=C,G;Reference_seq=C;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 29902237 29902237 33 + . ID=chr16:SAMtools:SNV:29902237;Variant_seq=A,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 29902719 29902719 29 + . ID=chr16:SAMtools:SNV:29902719;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 29905701 29905701 50 + . ID=chr16:SAMtools:SNV:29905701;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 29908402 29908402 30 + . ID=chr16:SAMtools:SNV:29908402;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 30027026 30027026 6 + . ID=chr16:SAMtools:SNV:30027026;Variant_seq=A;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 30287987 30287987 30 + . ID=chr16:SAMtools:SNV:30287987;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 30293763 30293763 18 + . ID=chr16:SAMtools:SNV:30293763;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 30296210 30296210 6 + . ID=chr16:SAMtools:SNV:30296210;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 30301161 30301161 12 + . ID=chr16:SAMtools:SNV:30301161;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 30301272 30301272 12 + . ID=chr16:SAMtools:SNV:30301272;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 30316266 30316266 33 + . ID=chr16:SAMtools:SNV:30316266;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 30400324 30400324 147 + . ID=chr16:SAMtools:SNV:30400324;Variant_seq=C,T;Reference_seq=C;Total_reads=28;Genotype=heterozygous; chr16 SAMtools SNV 30400501 30400501 54 + . ID=chr16:SAMtools:SNV:30400501;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 30402913 30402913 39 + . ID=chr16:SAMtools:SNV:30402913;Variant_seq=C;Reference_seq=T;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 30413014 30413014 12 + . ID=chr16:SAMtools:SNV:30413014;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 30414766 30414766 12 + . ID=chr16:SAMtools:SNV:30414766;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 30418072 30418072 57 + . ID=chr16:SAMtools:SNV:30418072;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 30574304 30574304 67 + . ID=chr16:SAMtools:SNV:30574304;Variant_seq=C,T;Reference_seq=C;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 30631571 30631571 36 + . ID=chr16:SAMtools:SNV:30631571;Variant_seq=T;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 30631722 30631722 12 + . ID=chr16:SAMtools:SNV:30631722;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 30642464 30642464 24 + . ID=chr16:SAMtools:SNV:30642464;Variant_seq=A;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 30653477 30653477 69 + . ID=chr16:SAMtools:SNV:30653477;Variant_seq=C,T;Reference_seq=C;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 30670141 30670141 6 + . ID=chr16:SAMtools:SNV:30670141;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 30677768 30677768 21 + . ID=chr16:SAMtools:SNV:30677768;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 30679541 30679541 15 + . ID=chr16:SAMtools:SNV:30679541;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 30688329 30688329 9 + . ID=chr16:SAMtools:SNV:30688329;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 30888403 30888403 6 + . ID=chr16:SAMtools:SNV:30888403;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 30912313 30912313 27 + . ID=chr16:SAMtools:SNV:30912313;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 30912427 30912427 33 + . ID=chr16:SAMtools:SNV:30912427;Variant_seq=T;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 30920423 30920423 51 + . ID=chr16:SAMtools:SNV:30920423;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 31012379 31012379 20 + . ID=chr16:SAMtools:SNV:31012379;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 31030072 31030072 51 + . ID=chr16:SAMtools:SNV:31030072;Variant_seq=C,T;Reference_seq=C;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 31039115 31039115 36 + . ID=chr16:SAMtools:SNV:31039115;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 31049327 31049327 6 + . ID=chr16:SAMtools:SNV:31049327;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 31049381 31049381 12 + . ID=chr16:SAMtools:SNV:31049381;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 31049494 31049494 54 + . ID=chr16:SAMtools:SNV:31049494;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 31060606 31060606 15 + . ID=chr16:SAMtools:SNV:31060606;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 31101443 31101443 3 + . ID=chr16:SAMtools:SNV:31101443;Variant_seq=A;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 31109529 31109529 33 + . ID=chr16:SAMtools:SNV:31109529;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 31139938 31139938 12 + . ID=chr16:SAMtools:SNV:31139938;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 31274259 31274259 18 + . ID=chr16:SAMtools:SNV:31274259;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 31278694 31278694 39 + . ID=chr16:SAMtools:SNV:31278694;Variant_seq=G;Reference_seq=C;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 31279175 31279175 85 + . ID=chr16:SAMtools:SNV:31279175;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 31292055 31292055 25 + . ID=chr16:SAMtools:SNV:31292055;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 31299690 31299690 93 + . ID=chr16:SAMtools:SNV:31299690;Variant_seq=C,G;Reference_seq=G;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 31329930 31329930 12 + . ID=chr16:SAMtools:SNV:31329930;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 31335179 31335179 5 + . ID=chr16:SAMtools:SNV:31335179;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 31426549 31426549 12 + . ID=chr16:SAMtools:SNV:31426549;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 31446887 31446887 40 + . ID=chr16:SAMtools:SNV:31446887;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 31725062 31725062 24 + . ID=chr16:SAMtools:SNV:31725062;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 31834120 31834120 12 + . ID=chr16:SAMtools:SNV:31834120;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 32071836 32071836 68 + . ID=chr16:SAMtools:SNV:32071836;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 33321317 33321317 32 + . ID=chr16:SAMtools:SNV:33321317;Variant_seq=C,G;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 33321428 33321428 24 + . ID=chr16:SAMtools:SNV:33321428;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 33321458 33321458 25 + . ID=chr16:SAMtools:SNV:33321458;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 33321644 33321644 75 + . ID=chr16:SAMtools:SNV:33321644;Variant_seq=C,T;Reference_seq=C;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 33321689 33321689 98 + . ID=chr16:SAMtools:SNV:33321689;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 33321715 33321715 20 + . ID=chr16:SAMtools:SNV:33321715;Variant_seq=C,G;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 33321778 33321778 23 + . ID=chr16:SAMtools:SNV:33321778;Variant_seq=C,T;Reference_seq=C;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 33332418 33332418 17 + . ID=chr16:SAMtools:SNV:33332418;Variant_seq=A,C;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 33479566 33479566 20 + . ID=chr16:SAMtools:SNV:33479566;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 33807102 33807102 21 + . ID=chr16:SAMtools:SNV:33807102;Variant_seq=A,C;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 33807117 33807117 16 + . ID=chr16:SAMtools:SNV:33807117;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 33860642 33860642 3 + . ID=chr16:SAMtools:SNV:33860642;Variant_seq=G,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 33860661 33860661 10 + . ID=chr16:SAMtools:SNV:33860661;Variant_seq=G;Reference_seq=A;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 33864760 33864760 4 + . ID=chr16:SAMtools:SNV:33864760;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 33864762 33864762 3 + . ID=chr16:SAMtools:SNV:33864762;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 33866290 33866290 12 + . ID=chr16:SAMtools:SNV:33866290;Variant_seq=C;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 33866365 33866365 18 + . ID=chr16:SAMtools:SNV:33866365;Variant_seq=A;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 33866778 33866778 18 + . ID=chr16:SAMtools:SNV:33866778;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 33870115 33870115 18 + . ID=chr16:SAMtools:SNV:33870115;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 33870587 33870587 21 + . ID=chr16:SAMtools:SNV:33870587;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 33870607 33870607 18 + . ID=chr16:SAMtools:SNV:33870607;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 33870609 33870609 15 + . ID=chr16:SAMtools:SNV:33870609;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 33871413 33871413 15 + . ID=chr16:SAMtools:SNV:33871413;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 33871462 33871462 15 + . ID=chr16:SAMtools:SNV:33871462;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 33871476 33871476 9 + . ID=chr16:SAMtools:SNV:33871476;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 33881260 33881260 20 + . ID=chr16:SAMtools:SNV:33881260;Variant_seq=A,C;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 44945900 44945900 28 + . ID=chr16:SAMtools:SNV:44945900;Variant_seq=A,T;Reference_seq=A;Total_reads=138;Genotype=heterozygous; chr16 SAMtools SNV 44945908 44945908 107 + . ID=chr16:SAMtools:SNV:44945908;Variant_seq=C,T;Reference_seq=C;Total_reads=143;Genotype=heterozygous; chr16 SAMtools SNV 44948159 44948159 43 + . ID=chr16:SAMtools:SNV:44948159;Variant_seq=A,T;Reference_seq=A;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 44950553 44950553 36 + . ID=chr16:SAMtools:SNV:44950553;Variant_seq=G,T;Reference_seq=G;Total_reads=65;Genotype=heterozygous; chr16 SAMtools SNV 44950729 44950729 27 + . ID=chr16:SAMtools:SNV:44950729;Variant_seq=A,G;Reference_seq=G;Total_reads=33;Genotype=heterozygous; chr16 SAMtools SNV 44951123 44951123 66 + . ID=chr16:SAMtools:SNV:44951123;Variant_seq=T;Reference_seq=C;Total_reads=27;Genotype=homozygous; chr16 SAMtools SNV 44951925 44951925 93 + . ID=chr16:SAMtools:SNV:44951925;Variant_seq=A,T;Reference_seq=T;Total_reads=70;Genotype=heterozygous; chr16 SAMtools SNV 44956756 44956756 5 + . ID=chr16:SAMtools:SNV:44956756;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 44958532 44958532 40 + . ID=chr16:SAMtools:SNV:44958532;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 44960079 44960079 62 + . ID=chr16:SAMtools:SNV:44960079;Variant_seq=C,T;Reference_seq=T;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 44961212 44961212 26 + . ID=chr16:SAMtools:SNV:44961212;Variant_seq=G,T;Reference_seq=G;Total_reads=101;Genotype=heterozygous; chr16 SAMtools SNV 44961235 44961235 36 + . ID=chr16:SAMtools:SNV:44961235;Variant_seq=C,G;Reference_seq=T;Total_reads=147;Genotype=heterozygous; chr16 SAMtools SNV 44961237 44961237 89 + . ID=chr16:SAMtools:SNV:44961237;Variant_seq=G,T;Reference_seq=T;Total_reads=152;Genotype=heterozygous; chr16 SAMtools SNV 44961349 44961349 49 + . ID=chr16:SAMtools:SNV:44961349;Variant_seq=A,T;Reference_seq=T;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 44962439 44962439 90 + . ID=chr16:SAMtools:SNV:44962439;Variant_seq=G;Reference_seq=A;Total_reads=94;Genotype=homozygous; chr16 SAMtools SNV 44967209 44967209 27 + . ID=chr16:SAMtools:SNV:44967209;Variant_seq=T;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 44968150 44968150 26 + . ID=chr16:SAMtools:SNV:44968150;Variant_seq=C,T;Reference_seq=C;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 44968164 44968164 20 + . ID=chr16:SAMtools:SNV:44968164;Variant_seq=G,T;Reference_seq=C;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 44968169 44968169 12 + . ID=chr16:SAMtools:SNV:44968169;Variant_seq=A,C;Reference_seq=A;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 44974616 44974616 174 + . ID=chr16:SAMtools:SNV:44974616;Variant_seq=C,T;Reference_seq=C;Total_reads=60;Genotype=heterozygous; chr16 SAMtools SNV 44974658 44974658 129 + . ID=chr16:SAMtools:SNV:44974658;Variant_seq=A,C;Reference_seq=T;Total_reads=52;Genotype=heterozygous; chr16 SAMtools SNV 44974677 44974677 87 + . ID=chr16:SAMtools:SNV:44974677;Variant_seq=T;Reference_seq=G;Total_reads=37;Genotype=homozygous; chr16 SAMtools SNV 44974734 44974734 11 + . ID=chr16:SAMtools:SNV:44974734;Variant_seq=C;Reference_seq=T;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 44974781 44974781 136 + . ID=chr16:SAMtools:SNV:44974781;Variant_seq=G,T;Reference_seq=G;Total_reads=54;Genotype=heterozygous; chr16 SAMtools SNV 44974797 44974797 94 + . ID=chr16:SAMtools:SNV:44974797;Variant_seq=G,T;Reference_seq=G;Total_reads=58;Genotype=heterozygous; chr16 SAMtools SNV 44977041 44977041 24 + . ID=chr16:SAMtools:SNV:44977041;Variant_seq=G;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 44977536 44977536 12 + . ID=chr16:SAMtools:SNV:44977536;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 44977558 44977558 26 + . ID=chr16:SAMtools:SNV:44977558;Variant_seq=C,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 44978138 44978138 28 + . ID=chr16:SAMtools:SNV:44978138;Variant_seq=A,T;Reference_seq=T;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 44983011 44983011 62 + . ID=chr16:SAMtools:SNV:44983011;Variant_seq=A,T;Reference_seq=A;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 44983258 44983258 24 + . ID=chr16:SAMtools:SNV:44983258;Variant_seq=C;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 44983330 44983330 67 + . ID=chr16:SAMtools:SNV:44983330;Variant_seq=C,T;Reference_seq=T;Total_reads=23;Genotype=heterozygous; chr16 SAMtools SNV 44983797 44983797 115 + . ID=chr16:SAMtools:SNV:44983797;Variant_seq=C,G;Reference_seq=C;Total_reads=31;Genotype=heterozygous; chr16 SAMtools SNV 44983818 44983818 123 + . ID=chr16:SAMtools:SNV:44983818;Variant_seq=G;Reference_seq=C;Total_reads=46;Genotype=homozygous; chr16 SAMtools SNV 44984576 44984576 61 + . ID=chr16:SAMtools:SNV:44984576;Variant_seq=A;Reference_seq=C;Total_reads=30;Genotype=homozygous; chr16 SAMtools SNV 44984591 44984591 107 + . ID=chr16:SAMtools:SNV:44984591;Variant_seq=A,T;Reference_seq=T;Total_reads=28;Genotype=heterozygous; chr16 SAMtools SNV 44984613 44984613 73 + . ID=chr16:SAMtools:SNV:44984613;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 44984618 44984618 30 + . ID=chr16:SAMtools:SNV:44984618;Variant_seq=C,G;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 44984628 44984628 27 + . ID=chr16:SAMtools:SNV:44984628;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 44984842 44984842 66 + . ID=chr16:SAMtools:SNV:44984842;Variant_seq=A;Reference_seq=G;Total_reads=24;Genotype=homozygous; chr16 SAMtools SNV 44984940 44984940 40 + . ID=chr16:SAMtools:SNV:44984940;Variant_seq=T;Reference_seq=A;Total_reads=26;Genotype=homozygous; chr16 SAMtools SNV 44984991 44984991 69 + . ID=chr16:SAMtools:SNV:44984991;Variant_seq=C;Reference_seq=T;Total_reads=25;Genotype=homozygous; chr16 SAMtools SNV 44985023 44985023 75 + . ID=chr16:SAMtools:SNV:44985023;Variant_seq=G;Reference_seq=C;Total_reads=26;Genotype=homozygous; chr16 SAMtools SNV 44985034 44985034 119 + . ID=chr16:SAMtools:SNV:44985034;Variant_seq=C,T;Reference_seq=T;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 44985057 44985057 51 + . ID=chr16:SAMtools:SNV:44985057;Variant_seq=G;Reference_seq=C;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 44985089 44985089 39 + . ID=chr16:SAMtools:SNV:44985089;Variant_seq=C;Reference_seq=A;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 44985100 44985100 36 + . ID=chr16:SAMtools:SNV:44985100;Variant_seq=G;Reference_seq=A;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 44985148 44985148 66 + . ID=chr16:SAMtools:SNV:44985148;Variant_seq=G;Reference_seq=C;Total_reads=23;Genotype=homozygous; chr16 SAMtools SNV 44985181 44985181 60 + . ID=chr16:SAMtools:SNV:44985181;Variant_seq=C;Reference_seq=T;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 44985238 44985238 18 + . ID=chr16:SAMtools:SNV:44985238;Variant_seq=A;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 44985417 44985417 54 + . ID=chr16:SAMtools:SNV:44985417;Variant_seq=A;Reference_seq=G;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 44985466 44985466 18 + . ID=chr16:SAMtools:SNV:44985466;Variant_seq=G;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 44985761 44985761 15 + . ID=chr16:SAMtools:SNV:44985761;Variant_seq=A,G;Reference_seq=A;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 44985767 44985767 36 + . ID=chr16:SAMtools:SNV:44985767;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 44985797 44985797 4 + . ID=chr16:SAMtools:SNV:44985797;Variant_seq=G;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 44986926 44986926 24 + . ID=chr16:SAMtools:SNV:44986926;Variant_seq=T;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 44986973 44986973 27 + . ID=chr16:SAMtools:SNV:44986973;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 45191057 45191057 9 + . ID=chr16:SAMtools:SNV:45191057;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 45195247 45195247 18 + . ID=chr16:SAMtools:SNV:45195247;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 45199957 45199957 15 + . ID=chr16:SAMtools:SNV:45199957;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 45209504 45209504 12 + . ID=chr16:SAMtools:SNV:45209504;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 45253785 45253785 51 + . ID=chr16:SAMtools:SNV:45253785;Variant_seq=A;Reference_seq=G;Total_reads=21;Genotype=homozygous; chr16 SAMtools SNV 45254599 45254599 24 + . ID=chr16:SAMtools:SNV:45254599;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 45263003 45263003 24 + . ID=chr16:SAMtools:SNV:45263003;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 45273937 45273937 9 + . ID=chr16:SAMtools:SNV:45273937;Variant_seq=A;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 45274813 45274813 42 + . ID=chr16:SAMtools:SNV:45274813;Variant_seq=G;Reference_seq=A;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 45301176 45301176 18 + . ID=chr16:SAMtools:SNV:45301176;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 45312714 45312714 21 + . ID=chr16:SAMtools:SNV:45312714;Variant_seq=G;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 45312818 45312818 9 + . ID=chr16:SAMtools:SNV:45312818;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 45312861 45312861 15 + . ID=chr16:SAMtools:SNV:45312861;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 45321983 45321983 9 + . ID=chr16:SAMtools:SNV:45321983;Variant_seq=C;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 45331500 45331500 45 + . ID=chr16:SAMtools:SNV:45331500;Variant_seq=A;Reference_seq=C;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 45559127 45559127 70 + . ID=chr16:SAMtools:SNV:45559127;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 46044060 46044060 46 + . ID=chr16:SAMtools:SNV:46044060;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 46179074 46179074 100 + . ID=chr16:SAMtools:SNV:46179074;Variant_seq=C,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 46252322 46252322 97 + . ID=chr16:SAMtools:SNV:46252322;Variant_seq=G,T;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 46255119 46255119 27 + . ID=chr16:SAMtools:SNV:46255119;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 46256217 46256217 34 + . ID=chr16:SAMtools:SNV:46256217;Variant_seq=A,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 46284958 46284958 33 + . ID=chr16:SAMtools:SNV:46284958;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 46680083 46680083 90 + . ID=chr16:SAMtools:SNV:46680083;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 46688282 46688282 56 + . ID=chr16:SAMtools:SNV:46688282;Variant_seq=C,T;Reference_seq=C;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 46730882 46730882 35 + . ID=chr16:SAMtools:SNV:46730882;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 46815699 46815699 72 + . ID=chr16:SAMtools:SNV:46815699;Variant_seq=C,T;Reference_seq=C;Total_reads=28;Genotype=heterozygous; chr16 SAMtools SNV 46852808 46852808 58 + . ID=chr16:SAMtools:SNV:46852808;Variant_seq=A,G;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 47088909 47088909 18 + . ID=chr16:SAMtools:SNV:47088909;Variant_seq=C;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 47089065 47089065 27 + . ID=chr16:SAMtools:SNV:47089065;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 47310288 47310288 30 + . ID=chr16:SAMtools:SNV:47310288;Variant_seq=G;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 47310486 47310486 24 + . ID=chr16:SAMtools:SNV:47310486;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 47969364 47969364 18 + . ID=chr16:SAMtools:SNV:47969364;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 48666979 48666979 42 + . ID=chr16:SAMtools:SNV:48666979;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 48675746 48675746 41 + . ID=chr16:SAMtools:SNV:48675746;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 48677623 48677623 67 + . ID=chr16:SAMtools:SNV:48677623;Variant_seq=C,T;Reference_seq=C;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 48677844 48677844 56 + . ID=chr16:SAMtools:SNV:48677844;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 48884162 48884162 21 + . ID=chr16:SAMtools:SNV:48884162;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 48905910 48905910 6 + . ID=chr16:SAMtools:SNV:48905910;Variant_seq=T;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 48946158 48946158 9 + . ID=chr16:SAMtools:SNV:48946158;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 49199702 49199702 18 + . ID=chr16:SAMtools:SNV:49199702;Variant_seq=C;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 49731060 49731060 39 + . ID=chr16:SAMtools:SNV:49731060;Variant_seq=A;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 50569428 50569428 9 + . ID=chr16:SAMtools:SNV:50569428;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 52062222 52062222 94 + . ID=chr16:SAMtools:SNV:52062222;Variant_seq=C,T;Reference_seq=T;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 52070534 52070534 49 + . ID=chr16:SAMtools:SNV:52070534;Variant_seq=C,T;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 52070556 52070556 24 + . ID=chr16:SAMtools:SNV:52070556;Variant_seq=C,T;Reference_seq=T;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 52081809 52081809 27 + . ID=chr16:SAMtools:SNV:52081809;Variant_seq=C,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 52083891 52083891 34 + . ID=chr16:SAMtools:SNV:52083891;Variant_seq=C,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 52084052 52084052 45 + . ID=chr16:SAMtools:SNV:52084052;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 52091596 52091596 45 + . ID=chr16:SAMtools:SNV:52091596;Variant_seq=A,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 52256504 52256504 30 + . ID=chr16:SAMtools:SNV:52256504;Variant_seq=A;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 52417982 52417982 35 + . ID=chr16:SAMtools:SNV:52417982;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 52525646 52525646 44 + . ID=chr16:SAMtools:SNV:52525646;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 53916627 53916627 6 + . ID=chr16:SAMtools:SNV:53916627;Variant_seq=A,T;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 53916642 53916642 5 + . ID=chr16:SAMtools:SNV:53916642;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 53921960 53921960 30 + . ID=chr16:SAMtools:SNV:53921960;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 54074209 54074209 15 + . ID=chr16:SAMtools:SNV:54074209;Variant_seq=A;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 54074268 54074268 141 + . ID=chr16:SAMtools:SNV:54074268;Variant_seq=A,G;Reference_seq=G;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 54074663 54074663 97 + . ID=chr16:SAMtools:SNV:54074663;Variant_seq=A,G;Reference_seq=A;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 54074733 54074733 39 + . ID=chr16:SAMtools:SNV:54074733;Variant_seq=A;Reference_seq=G;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 54075381 54075381 151 + . ID=chr16:SAMtools:SNV:54075381;Variant_seq=C,T;Reference_seq=C;Total_reads=39;Genotype=heterozygous; chr16 SAMtools SNV 54076637 54076637 46 + . ID=chr16:SAMtools:SNV:54076637;Variant_seq=A,C;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 54077036 54077036 98 + . ID=chr16:SAMtools:SNV:54077036;Variant_seq=C,G;Reference_seq=G;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 54081206 54081206 9 + . ID=chr16:SAMtools:SNV:54081206;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54084527 54084527 34 + . ID=chr16:SAMtools:SNV:54084527;Variant_seq=A,T;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 54084614 54084614 72 + . ID=chr16:SAMtools:SNV:54084614;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 54084799 54084799 21 + . ID=chr16:SAMtools:SNV:54084799;Variant_seq=A;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 54088263 54088263 63 + . ID=chr16:SAMtools:SNV:54088263;Variant_seq=G,T;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 54094188 54094188 33 + . ID=chr16:SAMtools:SNV:54094188;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 54094228 54094228 37 + . ID=chr16:SAMtools:SNV:54094228;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 54096692 54096692 88 + . ID=chr16:SAMtools:SNV:54096692;Variant_seq=C,G;Reference_seq=C;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 54116590 54116590 37 + . ID=chr16:SAMtools:SNV:54116590;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 54170419 54170419 18 + . ID=chr16:SAMtools:SNV:54170419;Variant_seq=A,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 54285459 54285459 63 + . ID=chr16:SAMtools:SNV:54285459;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 54285582 54285582 18 + . ID=chr16:SAMtools:SNV:54285582;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54286362 54286362 9 + . ID=chr16:SAMtools:SNV:54286362;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54287625 54287625 90 + . ID=chr16:SAMtools:SNV:54287625;Variant_seq=A,C;Reference_seq=A;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 54287936 54287936 9 + . ID=chr16:SAMtools:SNV:54287936;Variant_seq=A;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54289076 54289076 35 + . ID=chr16:SAMtools:SNV:54289076;Variant_seq=G,T;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 54289236 54289236 24 + . ID=chr16:SAMtools:SNV:54289236;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 54291090 54291090 42 + . ID=chr16:SAMtools:SNV:54291090;Variant_seq=C,T;Reference_seq=T;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 54338327 54338327 9 + . ID=chr16:SAMtools:SNV:54338327;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54355978 54355978 12 + . ID=chr16:SAMtools:SNV:54355978;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54355981 54355981 12 + . ID=chr16:SAMtools:SNV:54355981;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54356035 54356035 12 + . ID=chr16:SAMtools:SNV:54356035;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54356037 54356037 12 + . ID=chr16:SAMtools:SNV:54356037;Variant_seq=C;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54356046 54356046 9 + . ID=chr16:SAMtools:SNV:54356046;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54356172 54356172 6 + . ID=chr16:SAMtools:SNV:54356172;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54358703 54358703 21 + . ID=chr16:SAMtools:SNV:54358703;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 54363620 54363620 12 + . ID=chr16:SAMtools:SNV:54363620;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54363910 54363910 33 + . ID=chr16:SAMtools:SNV:54363910;Variant_seq=C;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 54368171 54368171 15 + . ID=chr16:SAMtools:SNV:54368171;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54371053 54371053 15 + . ID=chr16:SAMtools:SNV:54371053;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 54371101 54371101 21 + . ID=chr16:SAMtools:SNV:54371101;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 54371145 54371145 36 + . ID=chr16:SAMtools:SNV:54371145;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 54371213 54371213 39 + . ID=chr16:SAMtools:SNV:54371213;Variant_seq=T;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 54371251 54371251 15 + . ID=chr16:SAMtools:SNV:54371251;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54402110 54402110 18 + . ID=chr16:SAMtools:SNV:54402110;Variant_seq=T;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 54402118 54402118 24 + . ID=chr16:SAMtools:SNV:54402118;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 54408067 54408067 15 + . ID=chr16:SAMtools:SNV:54408067;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54408209 54408209 12 + . ID=chr16:SAMtools:SNV:54408209;Variant_seq=G;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54410819 54410819 15 + . ID=chr16:SAMtools:SNV:54410819;Variant_seq=T;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54411953 54411953 27 + . ID=chr16:SAMtools:SNV:54411953;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 54411956 54411956 20 + . ID=chr16:SAMtools:SNV:54411956;Variant_seq=A,C;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 54411974 54411974 43 + . ID=chr16:SAMtools:SNV:54411974;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 54420106 54420106 9 + . ID=chr16:SAMtools:SNV:54420106;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 54420148 54420148 29 + . ID=chr16:SAMtools:SNV:54420148;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 54420192 54420192 66 + . ID=chr16:SAMtools:SNV:54420192;Variant_seq=A,G;Reference_seq=G;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 54444077 54444077 9 + . ID=chr16:SAMtools:SNV:54444077;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54444163 54444163 30 + . ID=chr16:SAMtools:SNV:54444163;Variant_seq=A;Reference_seq=G;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 54444216 54444216 24 + . ID=chr16:SAMtools:SNV:54444216;Variant_seq=G;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 54460810 54460810 12 + . ID=chr16:SAMtools:SNV:54460810;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 54460824 54460824 9 + . ID=chr16:SAMtools:SNV:54460824;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54462890 54462890 12 + . ID=chr16:SAMtools:SNV:54462890;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54463137 54463137 9 + . ID=chr16:SAMtools:SNV:54463137;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 54466771 54466771 61 + . ID=chr16:SAMtools:SNV:54466771;Variant_seq=A,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 54926190 54926190 40 + . ID=chr16:SAMtools:SNV:54926190;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 55106002 55106002 36 + . ID=chr16:SAMtools:SNV:55106002;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 55210172 55210172 18 + . ID=chr16:SAMtools:SNV:55210172;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55225115 55225115 9 + . ID=chr16:SAMtools:SNV:55225115;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55243503 55243503 54 + . ID=chr16:SAMtools:SNV:55243503;Variant_seq=C;Reference_seq=G;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 55243506 55243506 48 + . ID=chr16:SAMtools:SNV:55243506;Variant_seq=A;Reference_seq=T;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 55243531 55243531 36 + . ID=chr16:SAMtools:SNV:55243531;Variant_seq=G;Reference_seq=C;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 55243881 55243881 9 + . ID=chr16:SAMtools:SNV:55243881;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55243972 55243972 21 + . ID=chr16:SAMtools:SNV:55243972;Variant_seq=T;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 55244205 55244205 15 + . ID=chr16:SAMtools:SNV:55244205;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55274483 55274483 50 + . ID=chr16:SAMtools:SNV:55274483;Variant_seq=G,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 55410323 55410323 28 + . ID=chr16:SAMtools:SNV:55410323;Variant_seq=G,T;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 55412997 55412997 9 + . ID=chr16:SAMtools:SNV:55412997;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55421899 55421899 72 + . ID=chr16:SAMtools:SNV:55421899;Variant_seq=C,T;Reference_seq=C;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 55424505 55424505 38 + . ID=chr16:SAMtools:SNV:55424505;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 55458789 55458789 2 + . ID=chr16:SAMtools:SNV:55458789;Variant_seq=T;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55490816 55490816 18 + . ID=chr16:SAMtools:SNV:55490816;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 55561224 55561224 27 + . ID=chr16:SAMtools:SNV:55561224;Variant_seq=T;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 55561478 55561478 18 + . ID=chr16:SAMtools:SNV:55561478;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 55561481 55561481 15 + . ID=chr16:SAMtools:SNV:55561481;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55562390 55562390 75 + . ID=chr16:SAMtools:SNV:55562390;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 55562980 55562980 9 + . ID=chr16:SAMtools:SNV:55562980;Variant_seq=A,C;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 55564952 55564952 6 + . ID=chr16:SAMtools:SNV:55564952;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55565111 55565111 24 + . ID=chr16:SAMtools:SNV:55565111;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 55572964 55572964 18 + . ID=chr16:SAMtools:SNV:55572964;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55573593 55573593 18 + . ID=chr16:SAMtools:SNV:55573593;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55573705 55573705 43 + . ID=chr16:SAMtools:SNV:55573705;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 55619678 55619678 3 + . ID=chr16:SAMtools:SNV:55619678;Variant_seq=A;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 55627151 55627151 30 + . ID=chr16:SAMtools:SNV:55627151;Variant_seq=G,T;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 55628416 55628416 17 + . ID=chr16:SAMtools:SNV:55628416;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 55628836 55628836 18 + . ID=chr16:SAMtools:SNV:55628836;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 55628940 55628940 9 + . ID=chr16:SAMtools:SNV:55628940;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55628949 55628949 12 + . ID=chr16:SAMtools:SNV:55628949;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55631184 55631184 9 + . ID=chr16:SAMtools:SNV:55631184;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55632681 55632681 9 + . ID=chr16:SAMtools:SNV:55632681;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 55634632 55634632 33 + . ID=chr16:SAMtools:SNV:55634632;Variant_seq=C,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 55658874 55658874 28 + . ID=chr16:SAMtools:SNV:55658874;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 55659053 55659053 74 + . ID=chr16:SAMtools:SNV:55659053;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 55665966 55665966 53 + . ID=chr16:SAMtools:SNV:55665966;Variant_seq=C,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 55668503 55668503 71 + . ID=chr16:SAMtools:SNV:55668503;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 55668733 55668733 51 + . ID=chr16:SAMtools:SNV:55668733;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 55669326 55669326 8 + . ID=chr16:SAMtools:SNV:55669326;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 55672775 55672775 12 + . ID=chr16:SAMtools:SNV:55672775;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 55673788 55673788 24 + . ID=chr16:SAMtools:SNV:55673788;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 55674015 55674015 6 + . ID=chr16:SAMtools:SNV:55674015;Variant_seq=A;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 55705023 55705023 9 + . ID=chr16:SAMtools:SNV:55705023;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 55712897 55712897 36 + . ID=chr16:SAMtools:SNV:55712897;Variant_seq=A;Reference_seq=G;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 55712958 55712958 18 + . ID=chr16:SAMtools:SNV:55712958;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 55714707 55714707 66 + . ID=chr16:SAMtools:SNV:55714707;Variant_seq=C,T;Reference_seq=C;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 55719209 55719209 78 + . ID=chr16:SAMtools:SNV:55719209;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 55728734 55728734 24 + . ID=chr16:SAMtools:SNV:55728734;Variant_seq=G;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 55812864 55812864 9 + . ID=chr16:SAMtools:SNV:55812864;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 55818647 55818647 18 + . ID=chr16:SAMtools:SNV:55818647;Variant_seq=C;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 55950234 55950234 21 + . ID=chr16:SAMtools:SNV:55950234;Variant_seq=C;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 56044114 56044114 37 + . ID=chr16:SAMtools:SNV:56044114;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 56051679 56051679 40 + . ID=chr16:SAMtools:SNV:56051679;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 56057342 56057342 78 + . ID=chr16:SAMtools:SNV:56057342;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 56057403 56057403 97 + . ID=chr16:SAMtools:SNV:56057403;Variant_seq=C,T;Reference_seq=T;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 56061274 56061274 52 + . ID=chr16:SAMtools:SNV:56061274;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 56246886 56246886 30 + . ID=chr16:SAMtools:SNV:56246886;Variant_seq=C,G;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 56247384 56247384 29 + . ID=chr16:SAMtools:SNV:56247384;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 56248107 56248107 70 + . ID=chr16:SAMtools:SNV:56248107;Variant_seq=A,C;Reference_seq=C;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 56253069 56253069 41 + . ID=chr16:SAMtools:SNV:56253069;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 56253105 56253105 7 + . ID=chr16:SAMtools:SNV:56253105;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 56267594 56267594 27 + . ID=chr16:SAMtools:SNV:56267594;Variant_seq=G;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 56309532 56309532 12 + . ID=chr16:SAMtools:SNV:56309532;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 56328627 56328627 30 + . ID=chr16:SAMtools:SNV:56328627;Variant_seq=G,T;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 56328838 56328838 44 + . ID=chr16:SAMtools:SNV:56328838;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 56332873 56332873 21 + . ID=chr16:SAMtools:SNV:56332873;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 56335989 56335989 42 + . ID=chr16:SAMtools:SNV:56335989;Variant_seq=A,G;Reference_seq=A;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 56336051 56336051 9 + . ID=chr16:SAMtools:SNV:56336051;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 56352895 56352895 20 + . ID=chr16:SAMtools:SNV:56352895;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 56355414 56355414 20 + . ID=chr16:SAMtools:SNV:56355414;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 56361412 56361412 39 + . ID=chr16:SAMtools:SNV:56361412;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 56568209 56568209 15 + . ID=chr16:SAMtools:SNV:56568209;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 56593848 56593848 42 + . ID=chr16:SAMtools:SNV:56593848;Variant_seq=A;Reference_seq=G;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 56608679 56608679 9 + . ID=chr16:SAMtools:SNV:56608679;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 56850048 56850048 55 + . ID=chr16:SAMtools:SNV:56850048;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 56885147 56885147 121 + . ID=chr16:SAMtools:SNV:56885147;Variant_seq=A,G;Reference_seq=A;Total_reads=23;Genotype=heterozygous; chr16 SAMtools SNV 57098096 57098096 9 + . ID=chr16:SAMtools:SNV:57098096;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 57109729 57109729 149 + . ID=chr16:SAMtools:SNV:57109729;Variant_seq=A,G;Reference_seq=G;Total_reads=29;Genotype=heterozygous; chr16 SAMtools SNV 57110422 57110422 33 + . ID=chr16:SAMtools:SNV:57110422;Variant_seq=A;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 57116490 57116490 37 + . ID=chr16:SAMtools:SNV:57116490;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 57123805 57123805 88 + . ID=chr16:SAMtools:SNV:57123805;Variant_seq=A,G;Reference_seq=G;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 57128686 57128686 36 + . ID=chr16:SAMtools:SNV:57128686;Variant_seq=T;Reference_seq=C;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 57128690 57128690 25 + . ID=chr16:SAMtools:SNV:57128690;Variant_seq=C,T;Reference_seq=T;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 57128810 57128810 24 + . ID=chr16:SAMtools:SNV:57128810;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 57131447 57131447 15 + . ID=chr16:SAMtools:SNV:57131447;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 57132990 57132990 97 + . ID=chr16:SAMtools:SNV:57132990;Variant_seq=A,G;Reference_seq=G;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 57136775 57136775 83 + . ID=chr16:SAMtools:SNV:57136775;Variant_seq=C,T;Reference_seq=C;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 57137714 57137714 101 + . ID=chr16:SAMtools:SNV:57137714;Variant_seq=C,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 57138031 57138031 22 + . ID=chr16:SAMtools:SNV:57138031;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 57141476 57141476 43 + . ID=chr16:SAMtools:SNV:57141476;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 57145238 57145238 79 + . ID=chr16:SAMtools:SNV:57145238;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 57165937 57165937 55 + . ID=chr16:SAMtools:SNV:57165937;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 57168138 57168138 50 + . ID=chr16:SAMtools:SNV:57168138;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 57300955 57300955 21 + . ID=chr16:SAMtools:SNV:57300955;Variant_seq=C;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 57308105 57308105 43 + . ID=chr16:SAMtools:SNV:57308105;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 57308344 57308344 43 + . ID=chr16:SAMtools:SNV:57308344;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 57313428 57313428 27 + . ID=chr16:SAMtools:SNV:57313428;Variant_seq=A,G;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 57315169 57315169 24 + . ID=chr16:SAMtools:SNV:57315169;Variant_seq=A,C;Reference_seq=A;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 57315184 57315184 48 + . ID=chr16:SAMtools:SNV:57315184;Variant_seq=A,G;Reference_seq=A;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 63562963 63562963 36 + . ID=chr16:SAMtools:SNV:63562963;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 63573588 63573588 103 + . ID=chr16:SAMtools:SNV:63573588;Variant_seq=A,C;Reference_seq=A;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 63583350 63583350 110 + . ID=chr16:SAMtools:SNV:63583350;Variant_seq=A,G;Reference_seq=A;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 64971224 64971224 18 + . ID=chr16:SAMtools:SNV:64971224;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 64978386 64978386 50 + . ID=chr16:SAMtools:SNV:64978386;Variant_seq=C,T;Reference_seq=C;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 64981736 64981736 9 + . ID=chr16:SAMtools:SNV:64981736;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 64987309 64987309 18 + . ID=chr16:SAMtools:SNV:64987309;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 64989691 64989691 92 + . ID=chr16:SAMtools:SNV:64989691;Variant_seq=C,T;Reference_seq=C;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 65144260 65144260 32 + . ID=chr16:SAMtools:SNV:65144260;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 65157274 65157274 26 + . ID=chr16:SAMtools:SNV:65157274;Variant_seq=G,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 65171509 65171509 70 + . ID=chr16:SAMtools:SNV:65171509;Variant_seq=C,T;Reference_seq=T;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 65171598 65171598 96 + . ID=chr16:SAMtools:SNV:65171598;Variant_seq=C,G;Reference_seq=G;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 65214972 65214972 102 + . ID=chr16:SAMtools:SNV:65214972;Variant_seq=A,G;Reference_seq=G;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 65228152 65228152 28 + . ID=chr16:SAMtools:SNV:65228152;Variant_seq=A,C;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 65777980 65777980 75 + . ID=chr16:SAMtools:SNV:65777980;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 66249169 66249169 42 + . ID=chr16:SAMtools:SNV:66249169;Variant_seq=A,G;Reference_seq=A;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 66266445 66266445 12 + . ID=chr16:SAMtools:SNV:66266445;Variant_seq=T;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 66583302 66583302 33 + . ID=chr16:SAMtools:SNV:66583302;Variant_seq=C;Reference_seq=G;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 66657962 66657962 34 + . ID=chr16:SAMtools:SNV:66657962;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 66783016 66783016 85 + . ID=chr16:SAMtools:SNV:66783016;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 66879360 66879360 48 + . ID=chr16:SAMtools:SNV:66879360;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 66920310 66920310 11 + . ID=chr16:SAMtools:SNV:66920310;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 66920682 66920682 81 + . ID=chr16:SAMtools:SNV:66920682;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 66931455 66931455 53 + . ID=chr16:SAMtools:SNV:66931455;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 67267666 67267666 30 + . ID=chr16:SAMtools:SNV:67267666;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 67269500 67269500 50 + . ID=chr16:SAMtools:SNV:67269500;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 67269718 67269718 12 + . ID=chr16:SAMtools:SNV:67269718;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 67271324 67271324 41 + . ID=chr16:SAMtools:SNV:67271324;Variant_seq=A,C;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 67273567 67273567 1 + . ID=chr16:SAMtools:SNV:67273567;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 67273680 67273680 87 + . ID=chr16:SAMtools:SNV:67273680;Variant_seq=C,T;Reference_seq=T;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 67275868 67275868 21 + . ID=chr16:SAMtools:SNV:67275868;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 67276251 67276251 54 + . ID=chr16:SAMtools:SNV:67276251;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 67276614 67276614 68 + . ID=chr16:SAMtools:SNV:67276614;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 67278841 67278841 60 + . ID=chr16:SAMtools:SNV:67278841;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 67279034 67279034 44 + . ID=chr16:SAMtools:SNV:67279034;Variant_seq=C,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 67286613 67286613 36 + . ID=chr16:SAMtools:SNV:67286613;Variant_seq=A,G;Reference_seq=A;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 67287286 67287286 53 + . ID=chr16:SAMtools:SNV:67287286;Variant_seq=A,C;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 67744819 67744819 90 + . ID=chr16:SAMtools:SNV:67744819;Variant_seq=C,G;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 67754326 67754326 29 + . ID=chr16:SAMtools:SNV:67754326;Variant_seq=A,C;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 67758432 67758432 103 + . ID=chr16:SAMtools:SNV:67758432;Variant_seq=A,T;Reference_seq=A;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 67875308 67875308 37 + . ID=chr16:SAMtools:SNV:67875308;Variant_seq=C,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 67933159 67933159 24 + . ID=chr16:SAMtools:SNV:67933159;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 67935054 67935054 43 + . ID=chr16:SAMtools:SNV:67935054;Variant_seq=A,G;Reference_seq=A;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 67952935 67952935 64 + . ID=chr16:SAMtools:SNV:67952935;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 68309965 68309965 15 + . ID=chr16:SAMtools:SNV:68309965;Variant_seq=G;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 68340356 68340356 9 + . ID=chr16:SAMtools:SNV:68340356;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 68520599 68520599 9 + . ID=chr16:SAMtools:SNV:68520599;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 68520856 68520856 57 + . ID=chr16:SAMtools:SNV:68520856;Variant_seq=A;Reference_seq=G;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 68520904 68520904 75 + . ID=chr16:SAMtools:SNV:68520904;Variant_seq=A,G;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 68522525 68522525 18 + . ID=chr16:SAMtools:SNV:68522525;Variant_seq=T;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 68522782 68522782 9 + . ID=chr16:SAMtools:SNV:68522782;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 68523093 68523093 21 + . ID=chr16:SAMtools:SNV:68523093;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 68525233 68525233 9 + . ID=chr16:SAMtools:SNV:68525233;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 68525398 68525398 54 + . ID=chr16:SAMtools:SNV:68525398;Variant_seq=C;Reference_seq=T;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 68527501 68527501 18 + . ID=chr16:SAMtools:SNV:68527501;Variant_seq=G;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 68527830 68527830 27 + . ID=chr16:SAMtools:SNV:68527830;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 68530628 68530628 42 + . ID=chr16:SAMtools:SNV:68530628;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 68531326 68531326 36 + . ID=chr16:SAMtools:SNV:68531326;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 68844678 68844678 36 + . ID=chr16:SAMtools:SNV:68844678;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 68852548 68852548 70 + . ID=chr16:SAMtools:SNV:68852548;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 68859535 68859535 30 + . ID=chr16:SAMtools:SNV:68859535;Variant_seq=G,T;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 68861081 68861081 27 + . ID=chr16:SAMtools:SNV:68861081;Variant_seq=A;Reference_seq=G;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 68952888 68952888 91 + . ID=chr16:SAMtools:SNV:68952888;Variant_seq=C,T;Reference_seq=C;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 68958358 68958358 18 + . ID=chr16:SAMtools:SNV:68958358;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 68974458 68974458 28 + . ID=chr16:SAMtools:SNV:68974458;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 68979732 68979732 41 + . ID=chr16:SAMtools:SNV:68979732;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 69072856 69072856 15 + . ID=chr16:SAMtools:SNV:69072856;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 69073610 69073610 63 + . ID=chr16:SAMtools:SNV:69073610;Variant_seq=A;Reference_seq=G;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 69075142 69075142 33 + . ID=chr16:SAMtools:SNV:69075142;Variant_seq=A;Reference_seq=G;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 69089255 69089255 45 + . ID=chr16:SAMtools:SNV:69089255;Variant_seq=G;Reference_seq=T;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 69105798 69105798 36 + . ID=chr16:SAMtools:SNV:69105798;Variant_seq=A;Reference_seq=G;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 69160721 69160721 12 + . ID=chr16:SAMtools:SNV:69160721;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69238351 69238351 15 + . ID=chr16:SAMtools:SNV:69238351;Variant_seq=G;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 69248490 69248490 6 + . ID=chr16:SAMtools:SNV:69248490;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69272085 69272085 9 + . ID=chr16:SAMtools:SNV:69272085;Variant_seq=G;Reference_seq=C;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 69289984 69289984 12 + . ID=chr16:SAMtools:SNV:69289984;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 69354036 69354036 6 + . ID=chr16:SAMtools:SNV:69354036;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69618865 69618865 39 + . ID=chr16:SAMtools:SNV:69618865;Variant_seq=C,T;Reference_seq=T;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 69618996 69618996 44 + . ID=chr16:SAMtools:SNV:69618996;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 69623061 69623061 143 + . ID=chr16:SAMtools:SNV:69623061;Variant_seq=C,T;Reference_seq=C;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 69623369 69623369 96 + . ID=chr16:SAMtools:SNV:69623369;Variant_seq=C,T;Reference_seq=T;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 69651935 69651935 107 + . ID=chr16:SAMtools:SNV:69651935;Variant_seq=A,G;Reference_seq=G;Total_reads=33;Genotype=heterozygous; chr16 SAMtools SNV 69652183 69652183 16 + . ID=chr16:SAMtools:SNV:69652183;Variant_seq=C,T;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 69656150 69656150 129 + . ID=chr16:SAMtools:SNV:69656150;Variant_seq=C,T;Reference_seq=T;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 69656301 69656301 54 + . ID=chr16:SAMtools:SNV:69656301;Variant_seq=A,C;Reference_seq=A;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 69656318 69656318 91 + . ID=chr16:SAMtools:SNV:69656318;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 69658701 69658701 38 + . ID=chr16:SAMtools:SNV:69658701;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 69658771 69658771 47 + . ID=chr16:SAMtools:SNV:69658771;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 69660585 69660585 60 + . ID=chr16:SAMtools:SNV:69660585;Variant_seq=A,G;Reference_seq=G;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 69660615 69660615 39 + . ID=chr16:SAMtools:SNV:69660615;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 69660770 69660770 181 + . ID=chr16:SAMtools:SNV:69660770;Variant_seq=C,T;Reference_seq=T;Total_reads=36;Genotype=heterozygous; chr16 SAMtools SNV 69660920 69660920 114 + . ID=chr16:SAMtools:SNV:69660920;Variant_seq=C,T;Reference_seq=T;Total_reads=27;Genotype=heterozygous; chr16 SAMtools SNV 69671281 69671281 65 + . ID=chr16:SAMtools:SNV:69671281;Variant_seq=C,T;Reference_seq=C;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 69685201 69685201 150 + . ID=chr16:SAMtools:SNV:69685201;Variant_seq=C,T;Reference_seq=C;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 69685351 69685351 155 + . ID=chr16:SAMtools:SNV:69685351;Variant_seq=A,G;Reference_seq=A;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 69707037 69707037 36 + . ID=chr16:SAMtools:SNV:69707037;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 69720953 69720953 71 + . ID=chr16:SAMtools:SNV:69720953;Variant_seq=C,T;Reference_seq=C;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 69721080 69721080 143 + . ID=chr16:SAMtools:SNV:69721080;Variant_seq=C,T;Reference_seq=C;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 69721344 69721344 103 + . ID=chr16:SAMtools:SNV:69721344;Variant_seq=C,T;Reference_seq=C;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 69728415 69728415 68 + . ID=chr16:SAMtools:SNV:69728415;Variant_seq=A,C;Reference_seq=A;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 69728482 69728482 88 + . ID=chr16:SAMtools:SNV:69728482;Variant_seq=A,G;Reference_seq=A;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 69728903 69728903 18 + . ID=chr16:SAMtools:SNV:69728903;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 69743946 69743946 21 + . ID=chr16:SAMtools:SNV:69743946;Variant_seq=C,G;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 69744241 69744241 163 + . ID=chr16:SAMtools:SNV:69744241;Variant_seq=C,T;Reference_seq=C;Total_reads=26;Genotype=heterozygous; chr16 SAMtools SNV 69744335 69744335 126 + . ID=chr16:SAMtools:SNV:69744335;Variant_seq=C,G;Reference_seq=C;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 69744361 69744361 107 + . ID=chr16:SAMtools:SNV:69744361;Variant_seq=C,T;Reference_seq=T;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 69744389 69744389 79 + . ID=chr16:SAMtools:SNV:69744389;Variant_seq=G,T;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 69753911 69753911 33 + . ID=chr16:SAMtools:SNV:69753911;Variant_seq=A,G;Reference_seq=G;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 69877040 69877040 30 + . ID=chr16:SAMtools:SNV:69877040;Variant_seq=T;Reference_seq=C;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 69877147 69877147 27 + . ID=chr16:SAMtools:SNV:69877147;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 69965976 69965976 21 + . ID=chr16:SAMtools:SNV:69965976;Variant_seq=G;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 69966028 69966028 33 + . ID=chr16:SAMtools:SNV:69966028;Variant_seq=G;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 69966441 69966441 12 + . ID=chr16:SAMtools:SNV:69966441;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69968947 69968947 15 + . ID=chr16:SAMtools:SNV:69968947;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 69973932 69973932 9 + . ID=chr16:SAMtools:SNV:69973932;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69975264 69975264 9 + . ID=chr16:SAMtools:SNV:69975264;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 69976603 69976603 6 + . ID=chr16:SAMtools:SNV:69976603;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 69976731 69976731 24 + . ID=chr16:SAMtools:SNV:69976731;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 69977096 69977096 15 + . ID=chr16:SAMtools:SNV:69977096;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70226135 70226135 9 + . ID=chr16:SAMtools:SNV:70226135;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70232383 70232383 18 + . ID=chr16:SAMtools:SNV:70232383;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70246478 70246478 33 + . ID=chr16:SAMtools:SNV:70246478;Variant_seq=A;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 70249944 70249944 18 + . ID=chr16:SAMtools:SNV:70249944;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 70255253 70255253 18 + . ID=chr16:SAMtools:SNV:70255253;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 70258749 70258749 36 + . ID=chr16:SAMtools:SNV:70258749;Variant_seq=A;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 70260937 70260937 15 + . ID=chr16:SAMtools:SNV:70260937;Variant_seq=G;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70275867 70275867 7 + . ID=chr16:SAMtools:SNV:70275867;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 70326001 70326001 15 + . ID=chr16:SAMtools:SNV:70326001;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 70330296 70330296 9 + . ID=chr16:SAMtools:SNV:70330296;Variant_seq=A;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 70337986 70337986 39 + . ID=chr16:SAMtools:SNV:70337986;Variant_seq=A;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 70338100 70338100 27 + . ID=chr16:SAMtools:SNV:70338100;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 70339945 70339945 12 + . ID=chr16:SAMtools:SNV:70339945;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70347667 70347667 12 + . ID=chr16:SAMtools:SNV:70347667;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70347722 70347722 21 + . ID=chr16:SAMtools:SNV:70347722;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 70349709 70349709 18 + . ID=chr16:SAMtools:SNV:70349709;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70362457 70362457 12 + . ID=chr16:SAMtools:SNV:70362457;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70512901 70512901 36 + . ID=chr16:SAMtools:SNV:70512901;Variant_seq=G;Reference_seq=T;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 70596947 70596947 15 + . ID=chr16:SAMtools:SNV:70596947;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70597106 70597106 12 + . ID=chr16:SAMtools:SNV:70597106;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70597172 70597172 15 + . ID=chr16:SAMtools:SNV:70597172;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70597533 70597533 15 + . ID=chr16:SAMtools:SNV:70597533;Variant_seq=G;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 70608443 70608443 100 + . ID=chr16:doped1;Variant_seq=A,G;Reference_seq=G;Total_reads=100;Genotype=heterozygous; chr16 SAMtools SNV 70612611 70612611 100 + . ID=chr16:doped2;Variant_seq=C,G;Reference_seq=G;Total_reads=100;Genotype=heterozygous; chr16 SAMtools SNV 70681658 70681658 12 + . ID=chr16:SAMtools:SNV:70681658;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70681996 70681996 39 + . ID=chr16:SAMtools:SNV:70681996;Variant_seq=C;Reference_seq=A;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 70687704 70687704 9 + . ID=chr16:SAMtools:SNV:70687704;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70688057 70688057 36 + . ID=chr16:SAMtools:SNV:70688057;Variant_seq=T;Reference_seq=G;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 70688316 70688316 27 + . ID=chr16:SAMtools:SNV:70688316;Variant_seq=A;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 70692515 70692515 9 + . ID=chr16:SAMtools:SNV:70692515;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 70692820 70692820 12 + . ID=chr16:SAMtools:SNV:70692820;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70694270 70694270 24 + . ID=chr16:SAMtools:SNV:70694270;Variant_seq=T;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 70694728 70694728 27 + . ID=chr16:SAMtools:SNV:70694728;Variant_seq=A;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 70695062 70695062 54 + . ID=chr16:SAMtools:SNV:70695062;Variant_seq=A;Reference_seq=G;Total_reads=21;Genotype=homozygous; chr16 SAMtools SNV 70695613 70695613 15 + . ID=chr16:SAMtools:SNV:70695613;Variant_seq=T;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70696685 70696685 12 + . ID=chr16:SAMtools:SNV:70696685;Variant_seq=A;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 70696897 70696897 24 + . ID=chr16:SAMtools:SNV:70696897;Variant_seq=C;Reference_seq=T;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 70697038 70697038 15 + . ID=chr16:SAMtools:SNV:70697038;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70699573 70699573 27 + . ID=chr16:SAMtools:SNV:70699573;Variant_seq=T;Reference_seq=C;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 70700096 70700096 45 + . ID=chr16:SAMtools:SNV:70700096;Variant_seq=A;Reference_seq=C;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 70700396 70700396 18 + . ID=chr16:SAMtools:SNV:70700396;Variant_seq=C;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70703942 70703942 18 + . ID=chr16:SAMtools:SNV:70703942;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70711019 70711019 15 + . ID=chr16:SAMtools:SNV:70711019;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 70714501 70714501 18 + . ID=chr16:SAMtools:SNV:70714501;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 70714885 70714885 24 + . ID=chr16:SAMtools:SNV:70714885;Variant_seq=G;Reference_seq=T;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 70716451 70716451 15 + . ID=chr16:SAMtools:SNV:70716451;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 71385259 71385259 24 + . ID=chr16:SAMtools:SNV:71385259;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 71389636 71389636 62 + . ID=chr16:SAMtools:SNV:71389636;Variant_seq=A,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 71403250 71403250 40 + . ID=chr16:SAMtools:SNV:71403250;Variant_seq=G,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 71480951 71480951 9 + . ID=chr16:SAMtools:SNV:71480951;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 71548787 71548787 25 + . ID=chr16:SAMtools:SNV:71548787;Variant_seq=C,T;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 71549770 71549770 38 + . ID=chr16:SAMtools:SNV:71549770;Variant_seq=A,G;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 71722539 71722539 22 + . ID=chr16:SAMtools:SNV:71722539;Variant_seq=A,G;Reference_seq=A;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 72892886 72892886 82 + . ID=chr16:SAMtools:SNV:72892886;Variant_seq=C,T;Reference_seq=T;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 73001885 73001885 26 + . ID=chr16:SAMtools:SNV:73001885;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 73003318 73003318 81 + . ID=chr16:SAMtools:SNV:73003318;Variant_seq=A;Reference_seq=C;Total_reads=37;Genotype=homozygous; chr16 SAMtools SNV 73012803 73012803 9 + . ID=chr16:SAMtools:SNV:73012803;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 73043223 73043223 18 + . ID=chr16:SAMtools:SNV:73043223;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 73043309 73043309 19 + . ID=chr16:SAMtools:SNV:73043309;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 73048290 73048290 22 + . ID=chr16:SAMtools:SNV:73048290;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 73049076 73049076 46 + . ID=chr16:SAMtools:SNV:73049076;Variant_seq=A,C;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 73057440 73057440 9 + . ID=chr16:SAMtools:SNV:73057440;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 73058981 73058981 54 + . ID=chr16:SAMtools:SNV:73058981;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 73060104 73060104 6 + . ID=chr16:SAMtools:SNV:73060104;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 73061361 73061361 72 + . ID=chr16:SAMtools:SNV:73061361;Variant_seq=A;Reference_seq=T;Total_reads=25;Genotype=homozygous; chr16 SAMtools SNV 73061506 73061506 45 + . ID=chr16:SAMtools:SNV:73061506;Variant_seq=C;Reference_seq=T;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 73061598 73061598 36 + . ID=chr16:SAMtools:SNV:73061598;Variant_seq=C;Reference_seq=G;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 73077034 73077034 15 + . ID=chr16:SAMtools:SNV:73077034;Variant_seq=A;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 73215284 73215284 163 + . ID=chr16:SAMtools:SNV:73215284;Variant_seq=A,G;Reference_seq=A;Total_reads=48;Genotype=heterozygous; chr16 SAMtools SNV 73215598 73215598 49 + . ID=chr16:SAMtools:SNV:73215598;Variant_seq=C,G;Reference_seq=C;Total_reads=23;Genotype=heterozygous; chr16 SAMtools SNV 73222199 73222199 77 + . ID=chr16:SAMtools:SNV:73222199;Variant_seq=A,G;Reference_seq=A;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 73222244 73222244 78 + . ID=chr16:SAMtools:SNV:73222244;Variant_seq=C,T;Reference_seq=T;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 73224135 73224135 83 + . ID=chr16:SAMtools:SNV:73224135;Variant_seq=C,G;Reference_seq=G;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 73229412 73229412 24 + . ID=chr16:SAMtools:SNV:73229412;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 73252085 73252085 12 + . ID=chr16:SAMtools:SNV:73252085;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 73252580 73252580 45 + . ID=chr16:SAMtools:SNV:73252580;Variant_seq=T;Reference_seq=G;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 73259851 73259851 42 + . ID=chr16:SAMtools:SNV:73259851;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 73263886 73263886 90 + . ID=chr16:SAMtools:SNV:73263886;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 73266734 73266734 82 + . ID=chr16:SAMtools:SNV:73266734;Variant_seq=A,C;Reference_seq=C;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 73270406 73270406 32 + . ID=chr16:SAMtools:SNV:73270406;Variant_seq=A,T;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 73270555 73270555 38 + . ID=chr16:SAMtools:SNV:73270555;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 73307906 73307906 12 + . ID=chr16:SAMtools:SNV:73307906;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 73465940 73465940 21 + . ID=chr16:SAMtools:SNV:73465940;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 73477875 73477875 12 + . ID=chr16:SAMtools:SNV:73477875;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 73478947 73478947 45 + . ID=chr16:SAMtools:SNV:73478947;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 73479949 73479949 9 + . ID=chr16:SAMtools:SNV:73479949;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 73484021 73484021 87 + . ID=chr16:SAMtools:SNV:73484021;Variant_seq=C,T;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 73495329 73495329 12 + . ID=chr16:SAMtools:SNV:73495329;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 73541026 73541026 111 + . ID=chr16:SAMtools:SNV:73541026;Variant_seq=C,T;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 73543017 73543017 12 + . ID=chr16:SAMtools:SNV:73543017;Variant_seq=A;Reference_seq=T;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 73557118 73557118 57 + . ID=chr16:SAMtools:SNV:73557118;Variant_seq=C;Reference_seq=A;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 73557126 73557126 51 + . ID=chr16:SAMtools:SNV:73557126;Variant_seq=T;Reference_seq=A;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 73557399 73557399 30 + . ID=chr16:SAMtools:SNV:73557399;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 73795604 73795604 15 + . ID=chr16:SAMtools:SNV:73795604;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 73885417 73885417 69 + . ID=chr16:SAMtools:SNV:73885417;Variant_seq=G;Reference_seq=A;Total_reads=26;Genotype=homozygous; chr16 SAMtools SNV 73896356 73896356 63 + . ID=chr16:SAMtools:SNV:73896356;Variant_seq=T;Reference_seq=C;Total_reads=23;Genotype=homozygous; chr16 SAMtools SNV 73896632 73896632 18 + . ID=chr16:SAMtools:SNV:73896632;Variant_seq=G;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 74003176 74003176 27 + . ID=chr16:SAMtools:SNV:74003176;Variant_seq=A;Reference_seq=G;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 74005774 74005774 9 + . ID=chr16:SAMtools:SNV:74005774;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 74006160 74006160 27 + . ID=chr16:SAMtools:SNV:74006160;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 74039272 74039272 15 + . ID=chr16:SAMtools:SNV:74039272;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 74200093 74200093 21 + . ID=chr16:SAMtools:SNV:74200093;Variant_seq=C;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 74200129 74200129 55 + . ID=chr16:SAMtools:SNV:74200129;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 74203992 74203992 63 + . ID=chr16:SAMtools:SNV:74203992;Variant_seq=A,G;Reference_seq=G;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 74231453 74231453 30 + . ID=chr16:SAMtools:SNV:74231453;Variant_seq=A,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 74907939 74907939 33 + . ID=chr16:SAMtools:SNV:74907939;Variant_seq=T;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 75018590 75018590 15 + . ID=chr16:SAMtools:SNV:75018590;Variant_seq=A;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 75018774 75018774 9 + . ID=chr16:SAMtools:SNV:75018774;Variant_seq=C;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 75019020 75019020 18 + . ID=chr16:SAMtools:SNV:75019020;Variant_seq=A;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 75019089 75019089 12 + . ID=chr16:SAMtools:SNV:75019089;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 75053343 75053343 27 + . ID=chr16:SAMtools:SNV:75053343;Variant_seq=A;Reference_seq=C;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 75081293 75081293 54 + . ID=chr16:SAMtools:SNV:75081293;Variant_seq=G;Reference_seq=A;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 75081439 75081439 35 + . ID=chr16:SAMtools:SNV:75081439;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 75081514 75081514 23 + . ID=chr16:SAMtools:SNV:75081514;Variant_seq=C,G;Reference_seq=C;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 75086477 75086477 81 + . ID=chr16:SAMtools:SNV:75086477;Variant_seq=C,T;Reference_seq=T;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 75469957 75469957 12 + . ID=chr16:SAMtools:SNV:75469957;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 75784681 75784681 45 + . ID=chr16:SAMtools:SNV:75784681;Variant_seq=A,G;Reference_seq=G;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 75789436 75789436 82 + . ID=chr16:SAMtools:SNV:75789436;Variant_seq=C,T;Reference_seq=C;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 75882826 75882826 45 + . ID=chr16:SAMtools:SNV:75882826;Variant_seq=T;Reference_seq=G;Total_reads=17;Genotype=homozygous; chr16 SAMtools SNV 75911474 75911474 68 + . ID=chr16:SAMtools:SNV:75911474;Variant_seq=G,T;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 75912792 75912792 18 + . ID=chr16:SAMtools:SNV:75912792;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 75917225 75917225 62 + . ID=chr16:SAMtools:SNV:75917225;Variant_seq=A,C;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 75917420 75917420 63 + . ID=chr16:SAMtools:SNV:75917420;Variant_seq=A,T;Reference_seq=A;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 75947263 75947263 106 + . ID=chr16:SAMtools:SNV:75947263;Variant_seq=C,T;Reference_seq=C;Total_reads=21;Genotype=heterozygous; chr16 SAMtools SNV 75947457 75947457 48 + . ID=chr16:SAMtools:SNV:75947457;Variant_seq=G;Reference_seq=A;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 75947629 75947629 46 + . ID=chr16:SAMtools:SNV:75947629;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 75950568 75950568 72 + . ID=chr16:SAMtools:SNV:75950568;Variant_seq=G,T;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 75950573 75950573 31 + . ID=chr16:SAMtools:SNV:75950573;Variant_seq=C,G;Reference_seq=C;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 75950708 75950708 59 + . ID=chr16:SAMtools:SNV:75950708;Variant_seq=C,G;Reference_seq=G;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 75955582 75955582 41 + . ID=chr16:SAMtools:SNV:75955582;Variant_seq=C,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 75955887 75955887 58 + . ID=chr16:SAMtools:SNV:75955887;Variant_seq=A,T;Reference_seq=A;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 75959185 75959185 54 + . ID=chr16:SAMtools:SNV:75959185;Variant_seq=G,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 76022537 76022537 9 + . ID=chr16:SAMtools:SNV:76022537;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 76467919 76467919 86 + . ID=chr16:SAMtools:SNV:76467919;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 76470467 76470467 35 + . ID=chr16:SAMtools:SNV:76470467;Variant_seq=C,T;Reference_seq=T;Total_reads=17;Genotype=heterozygous; chr16 SAMtools SNV 76470720 76470720 77 + . ID=chr16:SAMtools:SNV:76470720;Variant_seq=C,T;Reference_seq=C;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 76476302 76476302 34 + . ID=chr16:SAMtools:SNV:76476302;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 76563034 76563034 12 + . ID=chr16:SAMtools:SNV:76563034;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 76563407 76563407 26 + . ID=chr16:SAMtools:SNV:76563407;Variant_seq=G,T;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 76619660 76619660 41 + . ID=chr16:SAMtools:SNV:76619660;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 76621721 76621721 12 + . ID=chr16:SAMtools:SNV:76621721;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 79134599 79134599 24 + . ID=chr16:SAMtools:SNV:79134599;Variant_seq=T;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 79276380 79276380 27 + . ID=chr16:SAMtools:SNV:79276380;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 79276587 79276587 15 + . ID=chr16:SAMtools:SNV:79276587;Variant_seq=C;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 79602823 79602823 12 + . ID=chr16:SAMtools:SNV:79602823;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 79608466 79608466 15 + . ID=chr16:SAMtools:SNV:79608466;Variant_seq=T;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 79608602 79608602 6 + . ID=chr16:SAMtools:SNV:79608602;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 79613942 79613942 33 + . ID=chr16:SAMtools:SNV:79613942;Variant_seq=G,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 79632301 79632301 39 + . ID=chr16:SAMtools:SNV:79632301;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 79634322 79634322 103 + . ID=chr16:SAMtools:SNV:79634322;Variant_seq=C,T;Reference_seq=T;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 79635416 79635416 38 + . ID=chr16:SAMtools:SNV:79635416;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 79652261 79652261 12 + . ID=chr16:SAMtools:SNV:79652261;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 79652452 79652452 38 + . ID=chr16:SAMtools:SNV:79652452;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 79678646 79678646 12 + . ID=chr16:SAMtools:SNV:79678646;Variant_seq=C;Reference_seq=T;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 79681776 79681776 49 + . ID=chr16:SAMtools:SNV:79681776;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 79836621 79836621 15 + . ID=chr16:SAMtools:SNV:79836621;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 79853403 79853403 81 + . ID=chr16:SAMtools:SNV:79853403;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 79855534 79855534 31 + . ID=chr16:SAMtools:SNV:79855534;Variant_seq=A,G;Reference_seq=A;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 79858961 79858961 11 + . ID=chr16:SAMtools:SNV:79858961;Variant_seq=C,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 79859195 79859195 15 + . ID=chr16:SAMtools:SNV:79859195;Variant_seq=T;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 79861260 79861260 27 + . ID=chr16:SAMtools:SNV:79861260;Variant_seq=C;Reference_seq=T;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 79871882 79871882 35 + . ID=chr16:SAMtools:SNV:79871882;Variant_seq=C,T;Reference_seq=T;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 79876939 79876939 37 + . ID=chr16:SAMtools:SNV:79876939;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 79878331 79878331 15 + . ID=chr16:SAMtools:SNV:79878331;Variant_seq=G;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 79953788 79953788 76 + . ID=chr16:SAMtools:SNV:79953788;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 79956136 79956136 9 + . ID=chr16:SAMtools:SNV:79956136;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 79968592 79968592 61 + . ID=chr16:SAMtools:SNV:79968592;Variant_seq=C,G;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 80626398 80626398 18 + . ID=chr16:SAMtools:SNV:80626398;Variant_seq=C;Reference_seq=T;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 80682277 80682277 24 + . ID=chr16:SAMtools:SNV:80682277;Variant_seq=T;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 80739787 80739787 64 + . ID=chr16:SAMtools:SNV:80739787;Variant_seq=C,G;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 80740333 80740333 29 + . ID=chr16:SAMtools:SNV:80740333;Variant_seq=C,G;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 80740367 80740367 65 + . ID=chr16:SAMtools:SNV:80740367;Variant_seq=C,T;Reference_seq=C;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 82315160 82315160 55 + . ID=chr16:SAMtools:SNV:82315160;Variant_seq=A,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 82315425 82315425 21 + . ID=chr16:SAMtools:SNV:82315425;Variant_seq=C;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 82315523 82315523 43 + . ID=chr16:SAMtools:SNV:82315523;Variant_seq=A,G;Reference_seq=A;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 82315533 82315533 13 + . ID=chr16:SAMtools:SNV:82315533;Variant_seq=G,T;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 82315640 82315640 12 + . ID=chr16:SAMtools:SNV:82315640;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 82550286 82550286 15 + . ID=chr16:SAMtools:SNV:82550286;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 82550583 82550583 44 + . ID=chr16:SAMtools:SNV:82550583;Variant_seq=A,G;Reference_seq=A;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 82552070 82552070 14 + . ID=chr16:SAMtools:SNV:82552070;Variant_seq=G,T;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 82565964 82565964 12 + . ID=chr16:SAMtools:SNV:82565964;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 82588153 82588153 27 + . ID=chr16:SAMtools:SNV:82588153;Variant_seq=C,T;Reference_seq=T;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 82588456 82588456 15 + . ID=chr16:SAMtools:SNV:82588456;Variant_seq=T;Reference_seq=C;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 82589223 82589223 55 + . ID=chr16:SAMtools:SNV:82589223;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 82592849 82592849 20 + . ID=chr16:SAMtools:SNV:82592849;Variant_seq=G,T;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 82593339 82593339 42 + . ID=chr16:SAMtools:SNV:82593339;Variant_seq=A,G;Reference_seq=G;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 82593345 82593345 54 + . ID=chr16:SAMtools:SNV:82593345;Variant_seq=C,T;Reference_seq=T;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 82608471 82608471 20 + . ID=chr16:SAMtools:SNV:82608471;Variant_seq=G,T;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 82646946 82646946 41 + . ID=chr16:SAMtools:SNV:82646946;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 82647268 82647268 96 + . ID=chr16:SAMtools:SNV:82647268;Variant_seq=C,T;Reference_seq=C;Total_reads=16;Genotype=heterozygous; chr16 SAMtools SNV 82657135 82657135 36 + . ID=chr16:SAMtools:SNV:82657135;Variant_seq=C,T;Reference_seq=T;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 82659178 82659178 15 + . ID=chr16:SAMtools:SNV:82659178;Variant_seq=A;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 82659188 82659188 15 + . ID=chr16:SAMtools:SNV:82659188;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 82659376 82659376 55 + . ID=chr16:SAMtools:SNV:82659376;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 82659636 82659636 46 + . ID=chr16:SAMtools:SNV:82659636;Variant_seq=C,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 82661979 82661979 18 + . ID=chr16:SAMtools:SNV:82661979;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 82672984 82672984 45 + . ID=chr16:SAMtools:SNV:82672984;Variant_seq=A,G;Reference_seq=G;Total_reads=11;Genotype=heterozygous; chr16 SAMtools SNV 82682329 82682329 6 + . ID=chr16:SAMtools:SNV:82682329;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 82682771 82682771 50 + . ID=chr16:SAMtools:SNV:82682771;Variant_seq=A,G;Reference_seq=A;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 82690034 82690034 73 + . ID=chr16:SAMtools:SNV:82690034;Variant_seq=A,G;Reference_seq=G;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 82715749 82715749 103 + . ID=chr16:SAMtools:SNV:82715749;Variant_seq=C,G;Reference_seq=G;Total_reads=24;Genotype=heterozygous; chr16 SAMtools SNV 82750490 82750490 9 + . ID=chr16:SAMtools:SNV:82750490;Variant_seq=G;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 82763227 82763227 20 + . ID=chr16:SAMtools:SNV:82763227;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 82767316 82767316 6 + . ID=chr16:SAMtools:SNV:82767316;Variant_seq=C,G;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 82886327 82886327 12 + . ID=chr16:SAMtools:SNV:82886327;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 82910792 82910792 15 + . ID=chr16:SAMtools:SNV:82910792;Variant_seq=A;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 82915426 82915426 30 + . ID=chr16:SAMtools:SNV:82915426;Variant_seq=T;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 82915622 82915622 18 + . ID=chr16:SAMtools:SNV:82915622;Variant_seq=C;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 82915640 82915640 31 + . ID=chr16:SAMtools:SNV:82915640;Variant_seq=A,C;Reference_seq=A;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 82915846 82915846 15 + . ID=chr16:SAMtools:SNV:82915846;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 82918163 82918163 30 + . ID=chr16:SAMtools:SNV:82918163;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 83073591 83073591 15 + . ID=chr16:SAMtools:SNV:83073591;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 83073810 83073810 63 + . ID=chr16:SAMtools:SNV:83073810;Variant_seq=A,G;Reference_seq=G;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 83077724 83077724 21 + . ID=chr16:SAMtools:SNV:83077724;Variant_seq=A,T;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 83077897 83077897 15 + . ID=chr16:SAMtools:SNV:83077897;Variant_seq=G;Reference_seq=A;Total_reads=11;Genotype=homozygous; chr16 SAMtools SNV 83078038 83078038 54 + . ID=chr16:SAMtools:SNV:83078038;Variant_seq=C;Reference_seq=T;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 83078281 83078281 15 + . ID=chr16:SAMtools:SNV:83078281;Variant_seq=C;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 83080368 83080368 13 + . ID=chr16:SAMtools:SNV:83080368;Variant_seq=A,C;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 83080398 83080398 30 + . ID=chr16:SAMtools:SNV:83080398;Variant_seq=C,G;Reference_seq=G;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 83158096 83158096 78 + . ID=chr16:SAMtools:SNV:83158096;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 83441617 83441617 21 + . ID=chr16:SAMtools:SNV:83441617;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 83446042 83446042 6 + . ID=chr16:SAMtools:SNV:83446042;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 83446098 83446098 15 + . ID=chr16:SAMtools:SNV:83446098;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 83458253 83458253 24 + . ID=chr16:SAMtools:SNV:83458253;Variant_seq=A;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 83460050 83460050 27 + . ID=chr16:SAMtools:SNV:83460050;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 83460057 83460057 37 + . ID=chr16:SAMtools:SNV:83460057;Variant_seq=A,G;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 83463599 83463599 108 + . ID=chr16:SAMtools:SNV:83463599;Variant_seq=C,G;Reference_seq=C;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 83464951 83464951 21 + . ID=chr16:SAMtools:SNV:83464951;Variant_seq=A;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 83465171 83465171 45 + . ID=chr16:SAMtools:SNV:83465171;Variant_seq=C;Reference_seq=G;Total_reads=16;Genotype=homozygous; chr16 SAMtools SNV 83468413 83468413 18 + . ID=chr16:SAMtools:SNV:83468413;Variant_seq=C;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 83468696 83468696 18 + . ID=chr16:SAMtools:SNV:83468696;Variant_seq=C;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 83568981 83568981 54 + . ID=chr16:SAMtools:SNV:83568981;Variant_seq=C;Reference_seq=T;Total_reads=20;Genotype=homozygous; chr16 SAMtools SNV 83569123 83569123 27 + . ID=chr16:SAMtools:SNV:83569123;Variant_seq=A;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 83581356 83581356 9 + . ID=chr16:SAMtools:SNV:83581356;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 83658584 83658584 9 + . ID=chr16:SAMtools:SNV:83658584;Variant_seq=A;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 83664001 83664001 51 + . ID=chr16:SAMtools:SNV:83664001;Variant_seq=G;Reference_seq=C;Total_reads=22;Genotype=homozygous; chr16 SAMtools SNV 83666829 83666829 33 + . ID=chr16:SAMtools:SNV:83666829;Variant_seq=G;Reference_seq=A;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 83666858 83666858 121 + . ID=chr16:SAMtools:SNV:83666858;Variant_seq=C,T;Reference_seq=C;Total_reads=19;Genotype=heterozygous; chr16 SAMtools SNV 83669503 83669503 33 + . ID=chr16:SAMtools:SNV:83669503;Variant_seq=G;Reference_seq=T;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 83669598 83669598 15 + . ID=chr16:SAMtools:SNV:83669598;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 83678001 83678001 9 + . ID=chr16:SAMtools:SNV:83678001;Variant_seq=T;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 83678011 83678011 21 + . ID=chr16:SAMtools:SNV:83678011;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 83678056 83678056 72 + . ID=chr16:SAMtools:SNV:83678056;Variant_seq=C,T;Reference_seq=C;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 83678110 83678110 27 + . ID=chr16:SAMtools:SNV:83678110;Variant_seq=G;Reference_seq=A;Total_reads=13;Genotype=homozygous; chr16 SAMtools SNV 83696674 83696674 9 + . ID=chr16:SAMtools:SNV:83696674;Variant_seq=T;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 84248795 84248795 12 + . ID=chr16:SAMtools:SNV:84248795;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 84263548 84263548 15 + . ID=chr16:SAMtools:SNV:84263548;Variant_seq=C;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 84269606 84269606 15 + . ID=chr16:SAMtools:SNV:84269606;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 84278456 84278456 36 + . ID=chr16:SAMtools:SNV:84278456;Variant_seq=A;Reference_seq=G;Total_reads=15;Genotype=homozygous; chr16 SAMtools SNV 84370732 84370732 15 + . ID=chr16:SAMtools:SNV:84370732;Variant_seq=C;Reference_seq=A;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 84371027 84371027 24 + . ID=chr16:SAMtools:SNV:84371027;Variant_seq=A;Reference_seq=G;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 84372496 84372496 9 + . ID=chr16:SAMtools:SNV:84372496;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 84396004 84396004 21 + . ID=chr16:SAMtools:SNV:84396004;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 84396641 84396641 9 + . ID=chr16:SAMtools:SNV:84396641;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 84396687 84396687 21 + . ID=chr16:SAMtools:SNV:84396687;Variant_seq=T;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 84396712 84396712 12 + . ID=chr16:SAMtools:SNV:84396712;Variant_seq=C;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 84397044 84397044 9 + . ID=chr16:SAMtools:SNV:84397044;Variant_seq=G;Reference_seq=C;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 85589682 85589682 6 + . ID=chr16:SAMtools:SNV:85589682;Variant_seq=T;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 85590028 85590028 6 + . ID=chr16:SAMtools:SNV:85590028;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 85933908 85933908 55 + . ID=chr16:SAMtools:SNV:85933908;Variant_seq=A,G;Reference_seq=G;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 85934124 85934124 9 + . ID=chr16:SAMtools:SNV:85934124;Variant_seq=G;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 85989604 85989604 16 + . ID=chr16:SAMtools:SNV:85989604;Variant_seq=A,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 85993883 85993883 12 + . ID=chr16:SAMtools:SNV:85993883;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 86003340 86003340 9 + . ID=chr16:SAMtools:SNV:86003340;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 86005404 86005404 9 + . ID=chr16:SAMtools:SNV:86005404;Variant_seq=T;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 86287542 86287542 9 + . ID=chr16:SAMtools:SNV:86287542;Variant_seq=C;Reference_seq=G;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 86305699 86305699 33 + . ID=chr16:SAMtools:SNV:86305699;Variant_seq=C;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 86321768 86321768 18 + . ID=chr16:SAMtools:SNV:86321768;Variant_seq=T;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 86330457 86330457 33 + . ID=chr16:SAMtools:SNV:86330457;Variant_seq=A;Reference_seq=C;Total_reads=35;Genotype=homozygous; chr16 SAMtools SNV 86339759 86339759 30 + . ID=chr16:SAMtools:SNV:86339759;Variant_seq=A;Reference_seq=G;Total_reads=14;Genotype=homozygous; chr16 SAMtools SNV 86346187 86346187 15 + . ID=chr16:SAMtools:SNV:86346187;Variant_seq=G;Reference_seq=C;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 86346257 86346257 9 + . ID=chr16:SAMtools:SNV:86346257;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 86346365 86346365 24 + . ID=chr16:SAMtools:SNV:86346365;Variant_seq=A;Reference_seq=G;Total_reads=12;Genotype=homozygous; chr16 SAMtools SNV 86427880 86427880 21 + . ID=chr16:SAMtools:SNV:86427880;Variant_seq=G;Reference_seq=A;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 86479108 86479108 37 + . ID=chr16:SAMtools:SNV:86479108;Variant_seq=C,T;Reference_seq=C;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 86479155 86479155 92 + . ID=chr16:SAMtools:SNV:86479155;Variant_seq=A,G;Reference_seq=G;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 86479347 86479347 33 + . ID=chr16:SAMtools:SNV:86479347;Variant_seq=A,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 86517634 86517634 35 + . ID=chr16:SAMtools:SNV:86517634;Variant_seq=A,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 87171506 87171506 30 + . ID=chr16:SAMtools:SNV:87171506;Variant_seq=A,G;Reference_seq=A;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 87180295 87180295 32 + . ID=chr16:SAMtools:SNV:87180295;Variant_seq=A,C;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 87203030 87203030 24 + . ID=chr16:SAMtools:SNV:87203030;Variant_seq=T;Reference_seq=C;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 87216048 87216048 43 + . ID=chr16:SAMtools:SNV:87216048;Variant_seq=C,T;Reference_seq=T;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 87216333 87216333 6 + . ID=chr16:SAMtools:SNV:87216333;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 87240974 87240974 18 + . ID=chr16:SAMtools:SNV:87240974;Variant_seq=A;Reference_seq=G;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 87242060 87242060 32 + . ID=chr16:SAMtools:SNV:87242060;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 87300897 87300897 6 + . ID=chr16:SAMtools:SNV:87300897;Variant_seq=A;Reference_seq=G;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 87301254 87301254 42 + . ID=chr16:SAMtools:SNV:87301254;Variant_seq=A,C;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 87303798 87303798 15 + . ID=chr16:SAMtools:SNV:87303798;Variant_seq=C;Reference_seq=T;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 87304000 87304000 23 + . ID=chr16:SAMtools:SNV:87304000;Variant_seq=G,T;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 87305496 87305496 28 + . ID=chr16:SAMtools:SNV:87305496;Variant_seq=C,T;Reference_seq=C;Total_reads=8;Genotype=heterozygous; chr16 SAMtools SNV 87305634 87305634 12 + . ID=chr16:SAMtools:SNV:87305634;Variant_seq=A;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 87308019 87308019 9 + . ID=chr16:SAMtools:SNV:87308019;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 87399646 87399646 3 + . ID=chr16:SAMtools:SNV:87399646;Variant_seq=C,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 87610335 87610335 42 + . ID=chr16:SAMtools:SNV:87610335;Variant_seq=G;Reference_seq=A;Total_reads=18;Genotype=homozygous; chr16 SAMtools SNV 87696412 87696412 9 + . ID=chr16:SAMtools:SNV:87696412;Variant_seq=C;Reference_seq=T;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 87696436 87696436 15 + . ID=chr16:SAMtools:SNV:87696436;Variant_seq=C;Reference_seq=G;Total_reads=7;Genotype=homozygous; chr16 SAMtools SNV 87696482 87696482 21 + . ID=chr16:SAMtools:SNV:87696482;Variant_seq=C;Reference_seq=T;Total_reads=9;Genotype=homozygous; chr16 SAMtools SNV 87706274 87706274 18 + . ID=chr16:SAMtools:SNV:87706274;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 87708384 87708384 15 + . ID=chr16:SAMtools:SNV:87708384;Variant_seq=A;Reference_seq=G;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 87727152 87727152 25 + . ID=chr16:SAMtools:SNV:87727152;Variant_seq=A,G;Reference_seq=G;Total_reads=5;Genotype=heterozygous; chr16 SAMtools SNV 87802923 87802923 29 + . ID=chr16:SAMtools:SNV:87802923;Variant_seq=C,G;Reference_seq=G;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 87803290 87803290 12 + . ID=chr16:SAMtools:SNV:87803290;Variant_seq=G;Reference_seq=A;Total_reads=10;Genotype=homozygous; chr16 SAMtools SNV 87882779 87882779 9 + . ID=chr16:SAMtools:SNV:87882779;Variant_seq=G;Reference_seq=A;Total_reads=6;Genotype=homozygous; chr16 SAMtools SNV 88283404 88283404 9 + . ID=chr16:SAMtools:SNV:88283404;Variant_seq=G;Reference_seq=A;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 88286474 88286474 15 + . ID=chr16:SAMtools:SNV:88286474;Variant_seq=G;Reference_seq=A;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 88288053 88288053 18 + . ID=chr16:SAMtools:SNV:88288053;Variant_seq=C;Reference_seq=T;Total_reads=8;Genotype=homozygous; chr16 SAMtools SNV 88321056 88321056 23 + . ID=chr16:SAMtools:SNV:88321056;Variant_seq=C,T;Reference_seq=T;Total_reads=13;Genotype=heterozygous; chr16 SAMtools SNV 88327559 88327559 48 + . ID=chr16:SAMtools:SNV:88327559;Variant_seq=C,T;Reference_seq=C;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 88339800 88339800 41 + . ID=chr16:SAMtools:SNV:88339800;Variant_seq=C,T;Reference_seq=C;Total_reads=7;Genotype=heterozygous; chr16 SAMtools SNV 88340431 88340431 45 + . ID=chr16:SAMtools:SNV:88340431;Variant_seq=A,G;Reference_seq=G;Total_reads=14;Genotype=heterozygous; chr16 SAMtools SNV 88345992 88345992 35 + . ID=chr16:SAMtools:SNV:88345992;Variant_seq=C,T;Reference_seq=T;Total_reads=12;Genotype=heterozygous; chr16 SAMtools SNV 88385685 88385685 22 + . ID=chr16:SAMtools:SNV:88385685;Variant_seq=A,G;Reference_seq=A;Total_reads=9;Genotype=heterozygous; chr16 SAMtools SNV 88386260 88386260 22 + . ID=chr16:SAMtools:SNV:88386260;Variant_seq=C,T;Reference_seq=C;Total_reads=10;Genotype=heterozygous; chr16 SAMtools SNV 88397262 88397262 113 + . ID=chr16:SAMtools:SNV:88397262;Variant_seq=C,T;Reference_seq=T;Total_reads=15;Genotype=heterozygous; chr16 SAMtools SNV 88439182 88439182 83 + . ID=chr16:SAMtools:SNV:88439182;Variant_seq=C,G;Reference_seq=G;Total_reads=18;Genotype=heterozygous; chr16 SAMtools SNV 88578381 88578381 39 + . ID=chr16:SAMtools:SNV:88578381;Variant_seq=C;Reference_seq=A;Total_reads=19;Genotype=homozygous; chr16 SAMtools SNV 88622778 88622778 22 + . ID=chr16:SAMtools:SNV:88622778;Variant_seq=A,T;Reference_seq=T;Total_reads=6;Genotype=heterozygous; chr16 SAMtools SNV 88626562 88626562 139 + . ID=chr16:SAMtools:SNV:88626562;Variant_seq=C,T;Reference_seq=C;Total_reads=34;Genotype=heterozygous; chr16 SAMtools SNV 88629885 88629885 12 + . ID=chr16:SAMtools:SNV:88629885;Variant_seq=A;Reference_seq=C;Total_reads=5;Genotype=homozygous; chr16 SAMtools SNV 88630336 88630336 73 + . ID=chr16:SAMtools:SNV:88630336;Variant_seq=A,G;Reference_seq=A;Total_reads=25;Genotype=heterozygous; chr16 SAMtools SNV 88630588 88630588 65 + . ID=chr16:SAMtools:SNV:88630588;Variant_seq=C,T;Reference_seq=C;Total_reads=22;Genotype=heterozygous; chr16 SAMtools SNV 88630618 88630618 84 + . ID=chr16:SAMtools:SNV:88630618;Variant_seq=A,G;Reference_seq=G;Total_reads=20;Genotype=heterozygous; chr16 SAMtools SNV 88636333 88636333 63 + . ID=chr16:SAMtools:SNV:88636333;Variant_seq=T;Reference_seq=C;Total_reads=23;Genotype=homozygous; chr16 SAMtools SNV 88655725 88655725 48 + . ID=chr16:SAMtools:SNV:88655725;Variant_seq=G;Reference_seq=C;Total_reads=20;Genotype=homozygous;
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Last modification date: 22 Aug 2013