Burset M., Seledtsov I., Solovyev V. (Nucl.Acids Res.,2000,28,4364-4375; Nucl. Acids Res.,2001,29,255-259)
Complete mammals (43337 pairs) database
Complete human (28468 pairs) database
SpliceDB
Canonical | Non-canonical | |
Mammal pairs from GenBank | X | X |
Mammal EST supported pairs | X | X |
Mammal EST supported and corrected pairs | X | X |
Human pairs from GenBank | X | X |
Human EST supported pairs | X | X |
Human EST supported and corrected pairs | X | X |
Human EST supported, corrected and HTG supported pairs | X |
Mammalian frequency matrices for GT-AG pairs
donor site
34.08 60.36 9.14 0.00 0.00 52.57 71.26 7.08 15.98 36.24 12.90 3.27 0.00 0.00 2.82 7.56 5.50 16.46 18.31 12.48 80.34 100.00 0.00 41.94 11.76 81.35 20.90 11.38 14.25 7.24 0.00 100.00 2.55 9.29 5.88 46.16
acceptor site
9.00 8.44 7.51 6.82 7.63 7.98 9.66 9.23 7.57 7.69 23.76 4.21 100.00 0.00 23.86 31.03 31.04 30.69 29.32 32.60 33.00 37.26 38.56 41.02 35.28 30.92 70.82 0.00 0.00 13.81 12.50 11.52 10.56 10.35 11.05 11.32 11.25 8.52 6.56 6.37 21.14 0.32 0.00 100.00 51.97 42.36 44.04 47.04 49.43 47.05 46.28 40.81 42.89 44.54 50.50 24.09 24.61 0.00 0.00 10.37
Mammalian frequency matrices for GC-AG pairs
donor site
40.48 88.89 1.59 0.00 0.00 87.30 84.13 1.59 7.94 42.06 0.79 0.79 0.00 100.00 0.00 3.17 0.79 11.90 15.87 1.59 97.62 100.00 0.00 12.70 6.35 96.83 9.52 1.59 8.73 0.00 0.00 0.00 0.00 6.35 0.79 70.63
acceptor site
11.11 12.70 3.17 4.76 12.70 8.73 16.67 16.67 12.70 9.52 26.19 6.35 100.00 0.00 21.43 36.51 30.95 19.05 23.02 34.92 39.68 34.92 40.48 40.48 36.51 33.33 68.25 0.00 0.00 7.94 9.52 10.32 15.08 12.70 8.73 9.52 16.67 4.76 2.38 6.35 13.49 0.00 0.00 100.00 62.70 38.89 41.27 58.73 55.56 42.06 40.48 30.95 37.30 44.44 47.62 26.98 25.40 0.00 0.00 7.94