FindTerm

Reference: V. Solovyev, A Salamov (2011) Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, p. 61-78

FindTerm - Finding Terminators in bacterial genomes

Example

Paste nucleotide sequence here:
aaaatttttttttccccccccaaaagggggggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaggggggggggggcccccccccccccctttttttttttttaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttttttttttttttttgggggggggggc ccccccccccccctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaggggggggggggcccccccccccccctttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggggggcccccccccccccctttttttttttttaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggggggccccccc ccccccctttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaggggggggggggcccccccccccccctttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggggggcccccccccccccctttttttttttttaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggggggggccc ccccccccccctttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaa

Alternatively, load a local file with sequence:

Local file name:

All putative terminators (one best signal by default)
Energy threshold value

Graphical output of Computed structure is provided in Java viewer or postscript:
Run Java viewer (Java viewer help)
Generate Postscript file

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Last modification date: 26 Oct 2016

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FindTerm

Example