BestPal helix - Calculates best palindrome for given rna sequence with restrictions
Searching best "linear" rna secondary structure in Homo sapiens general transcription factor IIH, polypeptide 4, 52kDa (GTF2H4), mRNA.
Paste nucleotide sequence here: cttttccactcctccccttacctcccttctcttctgaattctccattctgggctcttgcctgtgaaatctttcttt gctttccccatcttttcctcgcattttttcaccatctttccctcaatctccaggagccaatgcgagactttggctc cgattaagcgacggcccgagactcggggtgcgcgaggaggatcgacagagtggtgatggagagcaccccttcaagg ggactgaaccgagtacacctacaatgcaggaatctgcaggaattcttagggggcctgagccctggggtattggacc gattgtatgggcaccctgccacatgtctggctgtcttcagggagctcccatccttggctaagaactgggtgatgcg gatgctctttctggagcagcctttgccacaggctgctgtagctctgtgggtaaagaaggaattcagcaaggctcag gaggaaagtacagggctgctgagcggcctccggatctggcacacacagctgctcccaggcgggctccagggcctca tcctcaaccccattttccgccagaacctccgcattgcccttctgggtggggggaaggcctggtctgatgacacaag tcagctgggaccagacaagcatgcccgggacgttccctcccttgacaagtacgccgaggagcgatgggaggtggtc ttgcacttcatggtgggctcccccagtgcagctgtcagccaggacttggctcagctcctcagccaggctgggctca tgaagagtactgaacctggagagccgccctgcattacttccgctggcttccagttcctgttgctggacaccccggc tcagctctggtactttatgttgcagtatttgcagacagcccagagccggggcatggacctggtagagattctctcc ttcctcttccagctcagcttctctactctgggcaaggattactctgtggaaggtatgagtgattctctgttgaact tcctgcaacatctgcgtgagtttgggcttgttttccagaggaagaggaaatctcggcgttactaccccacacgcct ggccatcaatctctcatcaggtgtctctggagctgggggcactgtgcatcagccaggtttcattgtcgtggaaacc aattaccgactgtatgcctacacggagtcggagctgcagattgccctcattgccctcttctctgagatgctctatc ggttccccaacatggtggtggcgcaggtgacccgggagagtgtgcagcaggcaatcgccagtggcatcacagccca gcagataatccatttcctaaggacaagagcccacccagtgatgctcaaacagacacctgtgctgccccccaccatc accgaccagatccggctctgggagctggaaagggacagactccggttcactgagggtgtcctgtataaccagttcc tgtcgcaagtggactttgagctgctgctggcccacgcgcgggagctgggcgtgctcgtgttcgagaactcggccaa gcggctcatggtggtgaccccggccgggcacagcgacgtcaagcgcttttggaagcggcagaaacatagctcctga gagcgcgggacttggacacggacctcggcgggcgggactgggcggggcggggcatcagaactcaggtgttttttat ttacgcgtcagggcttttcttgtttaataaagttatgatagctaaaaaaaaaaaaaaaaaaaaa
Alternatively, load a local file with sequence: Local file name:
Minimal spiral size: Maximum distance:
Graphical output of Computed structure is provided in Java viewer or postscript: Run Java viewer (Java viewer help) Generate Postscript file
Note. To run applet viewer you need to include www.softberry.com in the list of your browser (see instruction).
[Help] [Program's page][Example: Search for RNA secondary structure (Homo sapiens GTF2H4)][Example: Search for RNA secondary structure (fragment of Mus musculus Qtrtd1)]
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Last modification date: 26 Mar 2015