Services Test Online

CNNProm - Classification of Prokaryotic and Eukaryotic Promoters and non-promoter sequences

Example (Escherichia coli model)

Paste set of sequences in fasta format for bacteria 81 bases and plant or human 251 bases long:

Alternatively, load a local file with sequence in Fasta format:
Local file name:

Select model:
Escherichia coli
Bacillus subtilis
Human TATA
Human non-TATA
Mouse TATA
Mouse non-TATA
Arabidopsis TATA
Arabidopsis non-TATA

PS: This page is for demonstration of classification promoter and non-promoter sequences by CNN models and require sequences of exact length (81 for bacteria and 251 for eukaryotes). Search for promoters in a given sequences of variable length see here.

[Program's page]
[Example (Human TATA model)]

The approach implemented in the program is described at:
Solovyev V., Umarov R. (2016) Prediction of Prokaryotic and Eukaryotic Promoters Using Convolutional Deep Learning Neural Networks. arXiv:1610.00121 [q-bio.GN]

Your use of Softberry programs signifies that you accept Terms of Use

Last modification date: 26 Dec 2016