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PATHPRED : Metabolic Pathway Prediction by Association Rule Mining

This program developed in Softberry by (A. Bachinsky and V. Solovyev) is based on approach presented in Boudellioua I., Saidi R., Hoehndorf R., Martin, MJ., Solovyev V. (2016) Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining. PLoS ONE 11(7): e0158896. doi:10.1371/journal.pone.0158896

PathPred will identifies pathway for a given protein sequence (if its pathway is included in generated rules).

To correctly predict some of the pathways, a taxon (genus) of source organism must be specified. Pull-down menu Taxon contains a list of taxons that are present in prediction rules.


Paste protein sequence here:

Alternatively, load a file:
Local file name:


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Last modification date: 24 Jan 2017