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PATTERN - pattern search

Search for significant patterns in the set of sequences.

PATTERN output:

Found 5 pattern(s)

Pattern    1, Length =    9, Power:   11, Q:79.819653
   2  884 -  892 TTCTGAGAA
   3  168 -  176 TTCCTAGAA
   4  687 -  695 TTCTTGGAA
   5  312 -  320 TTCTTGGAA
   6  575 -  583 TTCTTGGAA
   7  732 -  740 TTCCTGGAA
   8  637 -  645 TTCTAAGAA
   9  477 -  485 TTCTAAGAA
  10  645 -  653 TTCGAAGAA
  11  841 -  849 TTCTAGGAA
  12  883 -  891 TTCTGAGAA

Pattern    2, Length =   10, Power:   11, Q:78.367499
   2  884 -  893 TTCTGAGAAA
   3  295 -  304 GCCTAAGAAA
   4  687 -  696 TTCTTGGAAT
   5  312 -  321 TTCTTGGAAA
   6  575 -  584 TTCTTGGAAA
   7  567 -  576 TTTTTGGAAA
   8  637 -  646 TTCTAAGAAA
   9  220 -  229 TTCGAAGAAA
  10  645 -  654 TTCGAAGAAA
  11  841 -  850 TTCTAGGAAT
  12  883 -  892 TTCTGAGAAA

Pattern    3, Length =   10, Power:   11, Q:78.287256
   2  884 -  893 TTCTGAGAAA
   3  295 -  304 GCCTAAGAAA
   4  640 -  649 TTCTTGGGAA
   5  312 -  321 TTCTTGGAAA
   6  575 -  584 TTCTTGGAAA
   7  567 -  576 TTTTTGGAAA
   8  637 -  646 TTCTAAGAAA
   9  220 -  229 TTCGAAGAAA
  10  645 -  654 TTCGAAGAAA
  11 1032 - 1041 TTCTAGGGAA
  12  883 -  892 TTCTGAGAAA

Pattern    4, Length =    9, Power:   11, Q:73.466252
   2   42 -   50 TTTCTGGAG
   3  109 -  117 TTCTAGGAG
   4  687 -  695 TTCTTGGAA
   5  312 -  320 TTCTTGGAA
   6  575 -  583 TTCTTGGAA
   7  567 -  575 TTTTTGGAA
   8  714 -  722 TTTTTGGAA
   9  293 -  301 TTTTTGGGG
  10  717 -  725 TTTTTGGGG
  11   37 -   45 TTTTTGGAG
  12  246 -  254 TTGTTGCAA

Pattern    5, Length =    9, Power:   11, Q:72.498644
   2  597 -  605 AGACAGCAG
   3   73 -   81 AGGCTGCGG
   4  543 -  551 AGGCTGGAG
   5  466 -  474 AGGCAGCAG
   6  785 -  793 AGGCTGCAG
   7  899 -  907 AGGCTGAAG
   8  581 -  589 AGACAGCAG
   9  396 -  404 AGCCTGCAG
  10  820 -  828 AGCCTGCAG
  11  879 -  887 AGACAGCAA
  12   95 -  103 AGCCAGCAG