Prediction of potential genes in microbial genomes Time: Tue May 17 05:43:22 2011 Seq name: gi|292822097|gb|ACYT02000001.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.1, whole genome shotgun sequence Length of sequence - 10068 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 87 - 155 97.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. 1 1 Tu 1 . - CDS 146 - 406 128 ## gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 - Term 509 - 561 14.3 2 2 Op 1 . - CDS 580 - 2007 2075 ## COG0281 Malic enzyme 3 2 Op 2 21/0.000 - CDS 2286 - 3782 2297 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 4 2 Op 3 31/0.000 - CDS 3782 - 5287 2295 ## COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 5 2 Op 4 . - CDS 5287 - 5583 530 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 6 3 Tu 1 . + CDS 5584 - 6867 1521 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 7 4 Tu 1 . - CDS 6885 - 9209 2869 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 8 5 Tu 1 . + CDS 9394 - 10066 -154 ## gi|154507532|ref|ZP_02043174.1| hypothetical protein ACTODO_00011 Predicted protein(s) >gi|292822097|gb|ACYT02000001.1| GENE 1 146 - 406 128 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293188963|ref|ZP_06607697.1| ## NR: gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 [Actinomyces odontolyticus F0309] # 3 86 1 84 84 103 98.0 3e-21 MGVGRLFTCRRELVCGFVVVVHCSGGWVFGLVFWGVWVLFVNSIVCLFVFYACFLFLSVF GWDCWLALFGWLVFPGFNVFVFVRRV >gi|292822097|gb|ACYT02000001.1| GENE 2 580 - 2007 2075 475 aa, chain - ## HITS:1 COG:alr4596 KEGG:ns NR:ns ## COG: alr4596 COG0281 # Protein_GI_number: 17232088 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Nostoc sp. PCC 7120 # 6 444 9 441 463 421 52.0 1e-117 MRTSPSYTASYRIEVDEKTTSIASIVDAVSSTGAEIKGLDVADSDRGRIIIDLTCDMRDS EHRREVRDAIGALPGVTADSVSDQTFMSHIGGKVEIHSKVPLRNRDDLSRAYTPGVARVC TAIHDMPQKAHLLTMKANTVAVVSDGTAVLGLGDIGPEAALPVMEGKAVLFKEFGGVDAW PVVLDTKDTEEIISIVKAIAPAYGGINLEDISAPRCFEIEERLRAELDIPVFHDDQHGTA IVVLSALINALKIVGKKIEDVRIVVSGVGAAGNAIIRLLLAQGARDIIGCGRDGALSGDD TEGMHPSRKALAEATNPRHVHGSLKEVLKGADVFIGVSSGNILDPSDVETMADDAIVFAL ANPTPEVDPIGAGKYAAVVATGRSDYPNQINNVLAFPGLFRGLLDAKVKEITTEVLRVAS VAIASVISEDELSPSYIIPGAFDKRVAPAVSKAVRRAVRDLPTVDIPVQPDMGVN >gi|292822097|gb|ACYT02000001.1| GENE 3 2286 - 3782 2297 498 aa, chain - ## HITS:1 COG:Cgl1230 KEGG:ns NR:ns ## COG: Cgl1230 COG0064 # Protein_GI_number: 19552480 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Corynebacterium glutamicum # 3 492 7 496 501 605 63.0 1e-173 MTELMDYDEAARRFDPVLGIEVHVELGTKTKMFDAAPNAFGGDPNTFVTPVSLGLPGSLP VVNHKAVEYAIKIGLALNCEIAEYCRFARKNYFYPDLTKAFQTSQSDEPIAHDGYVDVEL EDGTMFRVQIERAHMEEDAGKNTHIGGADGRIQGADYSLVDYNRAGVPLVEIVTRPIEGA GERAPEVAAAYVQALRDIFRALDVSEARMERGNVRADINVSLRPTPDSPLGTRTETKNVN SFRGIASAVRYEMQRQAQILSEGGTILQETRHYHEEDGSTSSGREKSDSEDYRYFPEPDL VPIRPDREWVEELRASLPELPVAKRRRLRTEWGYADMEMRDVINAGALELIEATVAAGCD PASARKWWMGEISRRAKEREVSLDEAGVSPAQVAELQGLIDSGRINDKLARQALEGVLAG EGDPTQVVEARGLEVVSDDGALTAAVQEALDANPDIVEKIKGGKVQAAGALVGAVMKATR GQADAARVRELIMEMVGA >gi|292822097|gb|ACYT02000001.1| GENE 4 3782 - 5287 2295 501 aa, chain - ## HITS:1 COG:Cgl1218 KEGG:ns NR:ns ## COG: Cgl1218 COG0154 # Protein_GI_number: 19552468 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases # Organism: Corynebacterium glutamicum # 2 484 12 494 497 501 59.0 1e-141 MNELLKKSALELADMLAAGQITSVELTQACLDRIDAIEDRVNAFITVDREGALATAADVD ARRAAGETLHRLAGVPIAVKDNVVTRGLRTTCASKILGDWKPPYDATVTAKIKEAGLPIV GKTNMDEFAMGSSTEHSAFGATKNPWDTERIPGGSGGGSAAAVAAYMVPLALGSDTGGSI RQPAFVTGTVGAKPTYGAVSRFGLVAMASSLDQIGPVTRTVADAAALTELIGGYDPNDST SLNEPVPALTEAVESVAAQGSMKGLKVGVVKELSGEGYQKDVIDAFNATVEKLREAGAEI VEVSCPHLEYSLGAYYLIMPAEVSSNLARFDGMRYGIRVEPTEGPVTAERVMAATREAGF GDEVKRRIILGTHVLSAGYYDAYYGSAQKVRTLIQRDFDAVFEQVDVLVSPTAPETAFKF GEKTSDPLAMYLYDVATIPANLAGIPGVNVPNAVSSAGLPIGFQVLAPARGDLVMYKVAS LVEALSDDVAGQCPAANWEEK >gi|292822097|gb|ACYT02000001.1| GENE 5 5287 - 5583 530 98 aa, chain - ## HITS:1 COG:MT3092 KEGG:ns NR:ns ## COG: MT3092 COG0721 # Protein_GI_number: 15842570 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 98 1 98 99 75 50.0 2e-14 MSRISTDEVARVAGLAHIALTDEEITRFAGELDAIADAVSKVSEVATPEVPATSHPIPLT NVWREDEIGQTVDRDEVLAQAPAAQDGMFLVPQILGED >gi|292822097|gb|ACYT02000001.1| GENE 6 5584 - 6867 1521 427 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 71 422 118 480 482 195 31.0 1e-49 MWHPTRMAFSQRRQLTRQTWSIVKKAGIALLAAQAAAVVTVHAIDRMRTARIPGGVHGFP TLPPADTQIGDTVARTYTEGTSLYADMLEAVEGATHHIYFETFIWRSDRWGQRFKTALID AAKRGVKVFCVWDGFGVLNQDPRFYKFPVMPNLHVRKFPMLRSGFFTLNIRRTGQDHRKI LVVDGEVGFVGGYNIGDPFANEWRDTHVRITGEAVWELENGFVDFWNHFRPKTCPELPDQ GARAWSADVTAQFNLPHYLLYPIRGMYIDAIERATDRVLITTAYFIPDREVLGSLIAAAR RGVRVQVLIPEYSNHILADWVARPYYGELLREGVEIWLYRHAMVHSKTMTVDGRWSTIGT ANIDRLSMRGNYEVCLQFFSRPLAARMEEIFANDLTTASRLTIDEWEKRSTLTRVGEVLL GPFEPFV >gi|292822097|gb|ACYT02000001.1| GENE 7 6885 - 9209 2869 774 aa, chain - ## HITS:1 COG:Rv3014c KEGG:ns NR:ns ## COG: Rv3014c COG0272 # Protein_GI_number: 15610151 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Mycobacterium tuberculosis H37Rv # 2 768 6 686 691 548 44.0 1e-155 MADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQLRSA DSPTMSVGGSVDSGFSEVRHLAQMMSLDDVFSLEELAAWETRMAEATGISDLEMTTEVKV DGLSINLLYENGRLVRAATRGDGYVGEDVTANARTIASIPQTLTGTVPARIEVRGEVYFP VADFAAFNEARVEAGEKTFVNARNAASGSLRQKDPTETAKRPLSMVAHGIGFVEVGEDFT EPTTQMGWYEQLRDWGLPVSPYTRMLTGRKAIEERIAELGEKRHDLEHEIDGVVVKINDL DLQRSLGSTSRTPRWAAAYKFPPEEVHTRLLDIRVQVGRTGRVTPYGVMESVLVAGSNVA RATLHNAQEVARKGVLIGDLVVLRKAGDVIPEIVAPVEDARNGSERPFVMPKQCPSCGTT LVQEKEGDVDLRCPNKGLCPAQITERLAHVGARSALDVEGLGDESALAMTQPENDRDEVA AALVAGHSVTLEDGTVLTLEGGRELPHGEQITRAEELLPAPQAPALRTEAALFDLRAEDL RDVMVWKPVKKKGEETGDWKQVRYFWTKAYKPRKLRGQTVFEPIEPSASKGTEKMLAELE KAKSQPLARVLVALSIRHVGPTAARALAEKFLSMDALRAASVEELSAVEGVGEEIGRSLR DWFTVDWHLEVLQAWARAGVRMADEAPEPTSDVLAGLTIVVSGAMPGYDREGAKEAITSR GGKAAGSVSKKTSLVVAGPGAGSKEKKAKELGVPVITEQQFADLLEGGLPAVGL >gi|292822097|gb|ACYT02000001.1| GENE 8 9394 - 10066 -154 224 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507532|ref|ZP_02043174.1| ## NR: gi|154507532|ref|ZP_02043174.1| hypothetical protein ACTODO_00011 [Actinomyces odontolyticus ATCC 17982] # 143 224 1 82 870 120 92.0 7e-26 MKDSGCLARSALRADVHLACVAGPDVGVVLAPGTVGRAGDVPLTCASVAREHLRFSTRDG RAVLRVSPGASPVRVRARLPLWRRHRDARPLPVGTRIRLEEDIFEVRGRPRCLVWPAPSE RGRGSITGSSLLRGAPLISVLVMGGFLLWRLHSSVSLRSVLVPACAGVVLVGIVAAVVLV WRARRRRLGWDGGALSLVLAGLQASSAPPRSARAAVWPGRPTRV Prediction of potential genes in microbial genomes Time: Tue May 17 05:43:46 2011 Seq name: gi|292822073|gb|ACYT02000002.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.10, whole genome shotgun sequence Length of sequence - 27599 bp Number of predicted genes - 21, with homology - 20 Number of transcription units - 11, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 2314 2622 ## DIP2325 putative surface-anchored protein - Prom 2345 - 2404 3.6 + Prom 2298 - 2357 1.8 2 2 Tu 1 . + CDS 2454 - 3269 1146 ## COG0708 Exonuclease III 3 3 Op 1 . - CDS 3348 - 4151 496 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 4 3 Op 2 . - CDS 4148 - 4936 732 ## HMPREF0573_10538 TetR family transcriptional regulator - Term 4971 - 5001 -0.4 5 3 Op 3 . - CDS 5012 - 7624 1743 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Term 7683 - 7725 4.8 6 4 Tu 1 . - CDS 7745 - 8407 475 ## Cfla_1555 hypothetical protein - Term 8629 - 8657 1.4 7 5 Op 1 . - CDS 8767 - 10179 1278 ## COG2311 Predicted membrane protein - Term 10203 - 10250 12.7 8 5 Op 2 . - CDS 10268 - 10975 918 ## gi|154507944|ref|ZP_02043586.1| hypothetical protein ACTODO_00430 - Prom 11000 - 11059 2.5 - Term 11112 - 11162 10.7 9 6 Op 1 . - CDS 11178 - 11834 848 ## gi|293188980|ref|ZP_06607713.1| conserved hypothetical protein - Term 11846 - 11882 -0.9 10 6 Op 2 10/0.000 - CDS 11965 - 12705 908 ## COG3442 Predicted glutamine amidotransferase 11 6 Op 3 . - CDS 12702 - 14012 1210 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Term 14512 - 14557 17.1 12 7 Op 1 3/0.000 - CDS 14577 - 15131 476 ## COG0789 Predicted transcriptional regulators 13 7 Op 2 2/0.000 - CDS 15135 - 16181 1517 ## COG2214 DnaJ-class molecular chaperone 14 7 Op 3 29/0.000 - CDS 16221 - 16877 775 ## COG0576 Molecular chaperone GrpE (heat shock protein) 15 7 Op 4 . - CDS 16874 - 18709 2910 ## COG0443 Molecular chaperone - Prom 18811 - 18870 2.8 16 8 Tu 1 . - CDS 19014 - 21566 3110 ## DIP0278 putative surface-anchored membrane protein 17 9 Tu 1 . - CDS 21707 - 21850 117 ## + Prom 21739 - 21798 3.2 18 10 Op 1 . + CDS 21916 - 24282 3092 ## COG3669 Alpha-L-fucosidase 19 10 Op 2 . + CDS 24362 - 25525 969 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 20 11 Op 1 . + CDS 25661 - 26044 320 ## COG0346 Lactoylglutathione lyase and related lyases 21 11 Op 2 . + CDS 26240 - 26695 781 ## Arch_1317 GCN5-related N-acetyltransferase + Term 26741 - 26784 12.5 Predicted protein(s) >gi|292822073|gb|ACYT02000002.1| GENE 1 1 - 2314 2622 771 aa, chain - ## HITS:1 COG:no KEGG:DIP2325 NR:ns ## KEGG: DIP2325 # Name: not_defined # Def: putative surface-anchored protein # Organism: C.diphtheriae # Pathway: not_defined # 5 732 19 785 879 288 28.0 8e-76 MSHLRRISTAALALFLALTPAAAWAGPDQDKEWIVTGQHVDAPIPVWHDDTNSFSLNTIN MPMEKTALWIPKAWTGTSDKDEAKSQLVIPAKRPDLAFLGAEGTVLNAAPQNPGPGNTPI WAGLGAGEIGDTDKFEGETYTLDLISVDGPGRMEMFIDNGDSVNRFLSSHDTAYRSVYNP RHTHLYTTFTQPGRYVANYKMTARSADGSAIYSSPITPLVWQVGGANPANGTIKDIESAY NGARAERGDGNSAAPTLTLSHHAEREHPGDNHLTDITIDTGVTTDTGRAWITVNGYFLTE VAVEGGRATVSELLGADAAAVQAIYVPGDSASARWISQTVQYSQRETEPVTVGGTDTILG PSNPDPAPVWNPDHLPISSRRVEVSYDLIPGSTDQYTATVRANDPTLRATYKIEFLESKW DFSPWCSMEGTLGAGGMDSKTQDLGVCQSDPMYMRVTLSPHPLSDAVMTVAEASDVTVGS HVGLTAMLKMRDGIAAPEEPEPAPQPTPDPAPTPDNGGNDTTPDPASSLLNDPVEIARGH LDVRLTQASGGNGLTYGLAVKDDSLTNARTSVLRTVGSTTLGVAPNARFVRPASLSDPSY DVLGPVGTATYVLPETQKSDIVWPGLSTEGIDYAALPEGADLTLHLAQAPEGARVAFFQG GTFGAGAKVHFDSSKGDGLVHTTEATHMHGNWVFSAPGTYRIEVGARSGERSLVEPQSFT VIVRSGHHNEQPAPVEEEPVPTPSPGPSPVPEPVPTPAPEPTPAPAPSVDP >gi|292822073|gb|ACYT02000002.1| GENE 2 2454 - 3269 1146 271 aa, chain + ## HITS:1 COG:MT0442 KEGG:ns NR:ns ## COG: MT0442 COG0708 # Protein_GI_number: 15839814 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Mycobacterium tuberculosis CDC1551 # 1 270 24 288 291 271 54.0 7e-73 MRFATWNVNSIRTRVDRVIAFLERSGTDVLAMQEIKCRPDQFPTEAFEEAGYHVAIHGLN QWNGVAVASRLPILDVQDHFPTQPAFGEPPVVEARALGVTIDTTNTLPSEDRQASSMTIW SLYVPNGRELTHAHYAYKLEWLANLAEQGRGWLTDPSALIALVGDWNVAPLDEDVWDMSA FEGATHVSAPEREAFAAFAADGWVEVTRERVTNYTYWDYQKLRFPKNEGMRIDFAYCSPA LAARVSGAQIDRDERKGKGASDHVPVIVDVD >gi|292822073|gb|ACYT02000002.1| GENE 3 3348 - 4151 496 267 aa, chain - ## HITS:1 COG:Cgl2206 KEGG:ns NR:ns ## COG: Cgl2206 COG1680 # Protein_GI_number: 19553456 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Corynebacterium glutamicum # 21 259 25 263 269 216 48.0 3e-56 MIGPLPSFDVALVLRVGGDVVYTYGDVDRVFPLASVTKPIVAWSVLVAVERGLISLDDPA GPEGSTVRHLLAHASGLPFEGRRPVAAPEKRRIYSNEGFDVLGEVIEAATGVGIAQWVRE TVFEPLGMATADIPGSPAHAGVASASDVSLFGAELARPTLLSGPLAALAALSQFPALAGV VPGYGRFNPCPWGLGLEIRGEKSPHWTAPDASPRTIGHFGQSGSFVWADRDLRASAAFVG AEPFGLWHHDNWSALNAELLRLAREHA >gi|292822073|gb|ACYT02000002.1| GENE 4 4148 - 4936 732 262 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10538 NR:ns ## KEGG: HMPREF0573_10538 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: M.curtisii # Pathway: not_defined # 4 206 3 192 215 106 33.0 8e-22 MTTQRKARGAYSVGQATRESILSAAMVLIAERGYNGFSLRDLGRRVGISHPAVVYHFPSK EAILRSAIQRHEEMNALFDVSINDETEGGFDEGGITVGSFVDWAVGEMRFAIKPGADAAI ALDCVLWAESSSEAHPAHAHYKYRTQQMEETLTAMIQTFVEEEGAEIGTTPRTLARILIR YWYGSVVSARYNDEPIDAREFVADFLAVCVQLLRLPAHYVLQLGASVPEEVAEVYARTLR KISEKTTAAAEAGVAPAPEATA >gi|292822073|gb|ACYT02000002.1| GENE 5 5012 - 7624 1743 870 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 858 2 804 815 676 44 0.0 MAREMTTKAQEAVSSALQAAGAAGNPQVEPIHLLEALIEQREGIALSLLEAVGADVRAIG ARTRNALVALPSAQGASAGSAQPSNALLAVVRDAGERAEAGGDQYISTEHLLIALAASQT EAGRILAQGGVEADALTQALAQLRPDPITSADPEGSFEALSKYGRDLTEVAREGKLDPVI GRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPESLRDKRLVSLD VASMVAGAKYRGEFEERLKAVLSEISRSDGQIITFIDELHTVVGAGGGSEGAMDAGNMLK PMLARGELRMVGATTLDEYRENIEKDPALERRFQQVFVGEPSVEDTVAILRGIAPKYEAH HKVTISDGALVAAATLSNRYITGRQLPDKAIDLIDEAASRLRMELDSSPVEIDELRRSVD RLRMEESYLTESDPEGLDEATQERLSKLRADLADREESLRALTARWEAEKAGHNRVGELR VQLDSLRTQLDLAVREGRWEEAGRLQNGEIPAVERQIAEAEAQAEEQDARSDDEPMIAEK VGPAEIAEVIEAWTGIPTGKLLQTETDKLLHMEDELGKRLIGQKEAVRAVSDAVRRSRAG LSDPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYSEKHSVARLVGAP PGYVGYEQGGQLTEAVRRRPYSVVLLDEVEKADPEIFDILLQVLDDGRLTDGQGRTVDFR NTILILTSNLGSQFLADPDLTPEEKRESVMSVVSVAFRPEFLNRLDETVMFDALTRENLG EIVDLLVASLESRLRERRIGLTVTEPARGWLARVGYDPAFGARPLRRLIQREIGDRLAKL LLSGDVQDGQNVTVDINDSIDGLVMNVDKP >gi|292822073|gb|ACYT02000002.1| GENE 6 7745 - 8407 475 220 aa, chain - ## HITS:1 COG:no KEGG:Cfla_1555 NR:ns ## KEGG: Cfla_1555 # Name: not_defined # Def: hypothetical protein # Organism: C.flavigena # Pathway: not_defined # 63 206 54 191 193 100 41.0 4e-20 MGWLWRADVDGGTDGEETPRRRELPDDTAPDMEQWGGSNAAPPEGIVTGNSEFEANRFDM VRPITQERLGLLFDSEGWAWRIDSDGDLCGFWEGHLFCFRFLGDSREVLSIVAVMKSLVP IECGEDLRDFLQAWHGEFLWPKAYVADQDEGDRVVAEVNADYEYGATDAQLVQQVMCALA TTLQLFRALEERYGLDDDEGPGPAGGHQRGFDGPAWLPES >gi|292822073|gb|ACYT02000002.1| GENE 7 8767 - 10179 1278 470 aa, chain - ## HITS:1 COG:Cgl1866 KEGG:ns NR:ns ## COG: Cgl1866 COG2311 # Protein_GI_number: 19553116 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 10 430 17 422 445 71 23.0 5e-12 MRTLSFTGERQLRYPAPDVARGFMLALIALANVPFWLRYFPEAPHAGHAALAAMGSADQW WYLARTLFVDRRAYPLFSILFGFGMAIMASRTMERERRAVMETFTAEEVAGWHPVQRQIV EENVERYARRTASRLIRRRGWWMLAFGLVHAVFFSGDIIGAYGLVAVVFAEVIVMTRAWV RVLVGVLVGSLSLLGIWSMAAFMGREAMMLEFHDPVSLDAGYPLVSVASWLIATPMTVLT ALVVPCVMIGVGVARWGLLQDPRGRGALLSGIAACGLGIGALGGLPFALMQLDWAFAGSA AWSYPLFHASGVAGACGWLALLALVGGGPREKLGTACAFLSAIGRRSMTAYLSQTLLFIL ICGLSISFGVRSLGVAVSGLIALVVWALIGLGCVIAEAMGSSRGPAEWALRWLVAKSAKK RPMPVFVPVPVVRSDVSIGVTQASSFPVAPVPASGVEPNGNVQGSTCDSE >gi|292822073|gb|ACYT02000002.1| GENE 8 10268 - 10975 918 235 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507944|ref|ZP_02043586.1| ## NR: gi|154507944|ref|ZP_02043586.1| hypothetical protein ACTODO_00430 [Actinomyces odontolyticus ATCC 17982] # 1 235 13 247 247 413 99.0 1e-114 MSNPPYGVPGDQGTPWPQYGDNGAGAPMQGMPMQGMPMQGGPQNFQGYGGPAPMPIVKGP SKAPGTILIVLGVLASFVAAPILFFVLWFQGVTDMAGALAQGATFSNGGTVEVGGAGSYM LQISGGEATTCKMIDSGNNVYDMSPFQSDKSLYYIDGLNNGTYTVRCEGVDQKASMTGMS VSPNDFTNTVGFAFLWSTVVGVTGVVLLIVGIVLVVRAGSKTKELQQQAMMSAMY >gi|292822073|gb|ACYT02000002.1| GENE 9 11178 - 11834 848 218 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293188980|ref|ZP_06607713.1| ## NR: gi|293188980|ref|ZP_06607713.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 218 18 235 235 369 100.0 1e-101 MSNPSYGPADQQNAVPTNGISYPGAAAPQGYGAPAPVVMSKLPGRGGAITTLVLGVVLMV FIAPIVFFATMIAGVAGTDGNAVKGGTTANGSVVTVTADGIFMVRADAHKDPSCSLIGAD DKSYELEPYAGSEDVYLAENLPAGSYVLQCDGIASGANITAFNASPEVVTKVFAMPFVWG TVVGVVGLILLIVGIVLLVKVNGKRRRITQESMLSAVR >gi|292822073|gb|ACYT02000002.1| GENE 10 11965 - 12705 908 246 aa, chain - ## HITS:1 COG:MT3816 KEGG:ns NR:ns ## COG: MT3816 COG3442 # Protein_GI_number: 15843334 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 6 242 2 230 231 249 59.0 5e-66 MSASTLRIGVLMPEVLGTYGDSGNALILAERARRRGIDAEVVHVGLTEEIPDSLDIYTLG GGEDTAQALAADKFRGTSGLARALYAGRPLLAICASLQVLGHWYEDARGVRVPGMGVLDI TTRPQGHRAIGELVCEPVLDGLTQTLTGFENHGGGTVLGPDASPLGRVISGVGNGTPQGE EAPEVRYDGAVQGSVIATYMHGPALARNPELADLLLERATGATLEPLDVPGVAELRKERL AGIQLS >gi|292822073|gb|ACYT02000002.1| GENE 11 12702 - 14012 1210 436 aa, chain - ## HITS:1 COG:MT3815 KEGG:ns NR:ns ## COG: MT3815 COG0769 # Protein_GI_number: 15843333 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Mycobacterium tuberculosis CDC1551 # 24 432 18 412 413 362 54.0 1e-99 MTKSSHHLSVRSRVAKAAGGAARFASRALGRGSGGMIGGEVAMRISPTFLSELAAPYSSV IVTGTNGKSTTTRMVRAALESAGPVASNINGDNMTSGVITALMQGKGATRAALEVDEMHV PAVAADVKPAVFVYLNLSRDQLDRVGEIGSVERRLRDGASAHPGAVVVANCDDPLIVSAA ADNPNVVWVAAGAGWGGDSAAYPRGGRVVRSGEDWHLIPAFDGEELPELSSRPQPQWWLE DIELAPEGPRATLRGPDGVSVPLKLKLPGRANLGNAAQAVAAAVAMGIDPAAAAAAVSSV AEVAGRYSVHDVNGRSARLMLAKNPAGWQEAMTMIDPRVDQVVIGVNGQVPDGQDLSWLW DVDFSAVKQPGRRVVTCGERGADLAVRLEYAGVHCDLIPLPMDALAACEPGRVEMLLNYT AMRDFKVLLDRKEGAR >gi|292822073|gb|ACYT02000002.1| GENE 12 14577 - 15131 476 184 aa, chain - ## HITS:1 COG:ML2493 KEGG:ns NR:ns ## COG: ML2493 COG0789 # Protein_GI_number: 15828347 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium leprae # 11 126 16 131 132 98 50.0 8e-21 MATTGSDDAITFVISVAAELAGMHPQTLRQYDRLGLVIPARTKGRGRRYTKRDVQRLRDV QRMSQEEGINLAGIRRILELERRVEALEEERDALRGAVAAAEAKRNRVFAASADGQVMPM RRGQRPWDSSSRSEARSGGSLTVWNPVRALAALASSEASARSALPAAPRSNARAVIEGTI VSRS >gi|292822073|gb|ACYT02000002.1| GENE 13 15135 - 16181 1517 348 aa, chain - ## HITS:1 COG:slr0093 KEGG:ns NR:ns ## COG: slr0093 COG2214 # Protein_GI_number: 16331768 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Synechocystis # 9 319 7 302 332 174 39.0 2e-43 MSEQEWFSKDFYKVLGVDKTADKKAITKAYRKLARQWHPDQNPGDKAAEDKFKEIGEAYA VLSNDEDRKRYDAIRAMASGGARFSAGSGGAGGFEDLFGAFGGAGGFGGGGHNVRFQTSG MPGGGGFEDILSGLFGGGGGGARFGGDPYGSPFGGAGHAQQAAPTPEKGGTVRAKLSISF RQALNGATLTIKVGGSPIKVRIPAGIKDGQKVRVKGHGKPGINGGPAGDLEVAVTVKPHP VFSREGDDLVLTLPVTVSEAILGTVVDVPIIDGNTATVKVPAGSSSGSEIRMRGGGVKTS KATGDLIARVAIQVPAKPSRDLKKLAKEMATAEGDLDVRASLFKAVEE >gi|292822073|gb|ACYT02000002.1| GENE 14 16221 - 16877 775 218 aa, chain - ## HITS:1 COG:Rv0351 KEGG:ns NR:ns ## COG: Rv0351 COG0576 # Protein_GI_number: 15607492 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Mycobacterium tuberculosis H37Rv # 70 210 42 182 235 76 39.0 3e-14 MSTEETNGFSAPNEDANVAGADSFESAPAGQAAENNETALGADDAAQASSEGSADDMSAF EEQIEDSDLATALERIASVEDQLARANAELYNQGQEYANYVRRSKEAIPGYKTAGQDEVI ESLISVLDDIAAARAHGDLEDGPFASIATKLEETLKTRFELERYGAPGDDFDPALHDALM ATTSPDVDHPVIGQVLTSGYRRGERVVRAAKVLVNNPE >gi|292822073|gb|ACYT02000002.1| GENE 15 16874 - 18709 2910 611 aa, chain - ## HITS:1 COG:Rv0350 KEGG:ns NR:ns ## COG: Rv0350 COG0443 # Protein_GI_number: 15607491 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Mycobacterium tuberculosis H37Rv # 1 596 1 598 625 741 68.0 0 MARAVGIDLGTTNSAIAVLEGGEPTIIPNAEGARTTPSVVAFSKTGEVLVGEIAKRQAVT NVDRTISSVKRHMGTDWTTEIDGKKYTAQEISARILMKLKADAEAYLGEPVTEAVITVPA YFNDAQRQATKDAGQIAGLKVERIVNEPTAAALAYGLEKGKEDELILVFDLGGGTFDVSL LEVGKDDDGFSTIQVRATSGDNNLGGDDWDQRIVNWLIDRVKAKTGADLSKDAVALQRLK EAAEQAKKELSSATSTNISLQYLSMTADGPIHLDESLTRAKFEELTSDLLERTKKPFRDV MAEAGVTVSEIDHVVLVGGSTRMPAVTEVVKELTGGREPNKGVNPDEVVAVGAALQAGVI QGDRKDVLLIDVTPLSLGIETKGGVMTKLIDRNTAIPTKASEIFSTAEDGQPSVLIQVYQ GEREFARDNKLLGTFELSGIAPAPRGVPQIEVTFDIDANGIVHVSAKDRGTGKEQSVTIT GGSSLSKEEIDRMVREAEEHAAEDKKRREEADIRNQAEQAVYATEKLLKDEADKISEETR EAVQKDVDAVKEALKGDDIEAVKTATATLSESGMKIGQEIYAKQQADEAGAQSAPAQDDV VDAEIVDEDNK >gi|292822073|gb|ACYT02000002.1| GENE 16 19014 - 21566 3110 850 aa, chain - ## HITS:1 COG:no KEGG:DIP0278 NR:ns ## KEGG: DIP0278 # Name: not_defined # Def: putative surface-anchored membrane protein # Organism: C.diphtheriae # Pathway: not_defined # 447 803 620 997 1080 93 29.0 4e-17 MTMFRAKWARVAASASALVLAATGIGVFGVFSAAPAEAAVNPNIKVAIKPLVLSDQDGVE IPGAGAQVEDPVRMYVEWDASDANPQPGDSFTVGLPTTGAALPDITNYYRFREVGRSDPL MFEGVQVGECVTAADVMTCTFNQAVAAQSNVKGKMNQMLMAQKETPLTKLPFNANGVETQ VPNPNDEPITQRLWTEKNVGKYANSLKRDSTQINWHITGSGRRLSERSGMPAGTYANKVV FNDVLGADGQTLLPDDSTWYVRVDPKSAPNQYPTVARVGQPGIKTTYGNYTLERTISADG KSATVTLTRTDGNFDPAINYEIVYSSKIDGNVIPEKQYTNSATLVGDKEGPITSAISYRD PITYTIEMKPGYGAFGVKKYVLGAQVGADAGQIPAATAVTVNVKYELPAGWDPALHPEWT APEGGTNPYTMKVPVEQGVAGVAFPKGTKVTLTESLDSAQLPAALRWQGEPSFSVGSTSA VNEVSFTIAENNVSAVTLTNTAAPAPGKIAVTKKVVGDIPAGKTFAFDYVCDDAAKTSGS ITDVVAGQAKESAEIPAGATCTVTERDASVAGFTLQTSTIDPVMVKSGEVASFEVTNTYT PVPGKIAVTKKVVGDIPAGKTFAFDYVCDDAAKTSGSITDVVAGQAKESAEIPAGATCTV TERDASVAGFTLQTSTIDPVMVKSGEVASFEVTNTYTPVPGKIAVTKKVVGDIPAGKTFA FDYVCDDAAKTSGSITDVVAGQAKESAEIPAGATCTVTERDASVAGFTLQTSTIDPVMVK SGEVASFEVTNTYTPVPSPTPTPSETPGGNGGGDRPKLAKTGADVIGGSLATLILLGAGG GLLALRRARH >gi|292822073|gb|ACYT02000002.1| GENE 17 21707 - 21850 117 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNAICCHIATACRAGCDQVHILNADWLESCCWRLLLALWVRGTWWSS >gi|292822073|gb|ACYT02000002.1| GENE 18 21916 - 24282 3092 788 aa, chain + ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 60 409 17 351 449 122 27.0 3e-27 MHITKRVAGTLLAGLLTLGMAGPALADTPTADGAQSGTPAPQATYDARYAIPAAVAASSE AKVSEWQDMKYAMFIHWGVYSSYAGWYKGQKQEVGYPEQIKAWGHQQTWDSRIPLQGIPR EEYLATAQTFEAPNFDATAWCQQAKDTGMKMLLITSKHHDGFAMWDTATTDYNFTKQSPS HRDPLLELSQACKQVGIKFGLYFSNIDWEKQPENPWQNANTLDEEGYMEYIHAQLKELLG GKYGEIAELWYDMGKPNPAQSDQLRKWAHELQPNIMINSRVGNDRADFEVGWDNEMQSEQ TQGPWESAVSIFHKTWGYANWDDAAPKFKDTGYPDYPNWDHMINVDNTTALRKAPGGAHK KTTEIVGNMFSTVALGGQFLFNVGPKFDGSYDPWDASVLKGIGDWNRAHPGILNNSRPTH FPIESWGKTMVDDSHIYMGIEKWPADGVITLRGAGANDISSVKLDGSDAALTYKVEGNDL VITLPAQPDEILPVVTATTNGAPNYVPTGLTTIGTEATTIPASGLEKFKAPTPKTGETSF TASITSGDQIASGVSVSFDTEGFTDAYAKYKVSVDGQVIKGLTVAELKEGVGPFAIGANQ TARVTLEYDNPAYVLKGFGKDTTVKSVTVKAEKLSTPAVTVKPSTVEAGKTITVKGTGFA PESAVTLTLHSEPVEVGTATVDENGAFSAEVTVPANTEAGDHTVVAESTSPAVTASAPLT VTAPAVPSAEPSASPSVQPSAAPAPAPEQGGKGGLARTGTNALIVVAGALIAAGVGTVLI RRSRLTKA >gi|292822073|gb|ACYT02000002.1| GENE 19 24362 - 25525 969 387 aa, chain + ## HITS:1 COG:STM0882 KEGG:ns NR:ns ## COG: STM0882 COG2265 # Protein_GI_number: 16764244 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Salmonella typhimurium LT2 # 1 384 1 374 376 280 43.0 2e-75 MRCDHFDAGTCHSCSLLPQPYERQLAEKVDAVVAALAHVPGTQEIRWLSPASSPEEGFRT SVKLVVGGSRRRPTLGLLGPDRRGVDLPGCPIQHPAINRATPGLKRFIRALDLTPYDVPT KRGELKNILVTVGAEERLMIRFVLRTRERVSDIRSALPLLRDLVPSAHVVTANIHPTHEA IVEGPDEIILTRTRTLPLSVEGLELGPRSFAQTNAHVASTLYEQASVWASRPFTDGRLPE SLWDLYCGVGGFALACARSGFPRVTGVEVSPGAISSAISAARHAGLSRGAATFIADDATA WARAQSPEDVPDVIVVNPPRRGIGADLAAYLNGCAAPRVIYSSCNPASLARDLQLMPSLR PVEGRIFDMFPHTTHVEVALLLERERA >gi|292822073|gb|ACYT02000002.1| GENE 20 25661 - 26044 320 127 aa, chain + ## HITS:1 COG:FN1050 KEGG:ns NR:ns ## COG: FN1050 COG0346 # Protein_GI_number: 19704385 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Fusobacterium nucleatum # 1 127 1 127 127 181 66.0 3e-46 MRIEHVAMYINDLEAARDFFVRYLGGRSDGGYHNTTTGFRSYFITFEEGPRLEVMTKPRM DDAVKGINRTGYAHIAFSVGSEEAVDELTATLHAGGYEVLSGPRTTGDGYYESCVVAIEG NQIEITI >gi|292822073|gb|ACYT02000002.1| GENE 21 26240 - 26695 781 151 aa, chain + ## HITS:1 COG:no KEGG:Arch_1317 NR:ns ## KEGG: Arch_1317 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: A.haemolyticum # Pathway: not_defined # 1 146 1 146 148 190 68.0 1e-47 MTVELITAATPEIHEAMGRLIPQLSRSAAPMSEADVQRFLSQSGVHFFVFRSETADAEGN HPILGMLSLATFEIPTGVRAWVEDVVVDEAARGQGAGQALVVAAIEHAQKIGARTVDLTS RPSREAANRLYQRAGFQLRETNVYRVTLEKK Prediction of potential genes in microbial genomes Time: Tue May 17 05:45:06 2011 Seq name: gi|292822026|gb|ACYT02000003.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.11, whole genome shotgun sequence Length of sequence - 46235 bp Number of predicted genes - 48, with homology - 45 Number of transcription units - 23, operones - 11 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 116 - 955 1029 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 2 2 Tu 1 . + CDS 994 - 2307 1221 ## COG1362 Aspartyl aminopeptidase + Term 2473 - 2528 16.1 3 3 Tu 1 . - CDS 2460 - 3134 873 ## COG2801 Transposase and inactivated derivatives 4 4 Tu 1 . - CDS 3320 - 3658 252 ## Shel_05870 hypothetical protein - Prom 3742 - 3801 1.9 - Term 3825 - 3885 16.0 5 5 Tu 1 . - CDS 3924 - 4757 726 ## COG2186 Transcriptional regulators + Prom 4648 - 4707 1.9 6 6 Tu 1 . + CDS 4756 - 6327 2575 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 6352 - 6416 6.1 7 7 Tu 1 . - CDS 6320 - 6547 153 ## 8 8 Op 1 4/0.000 + CDS 6444 - 7397 1309 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 9 8 Op 2 44/0.000 + CDS 7401 - 9449 3065 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 10 8 Op 3 . + CDS 9446 - 10264 296 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 11 8 Op 4 4/0.000 + CDS 10267 - 11184 1384 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 12 8 Op 5 5/0.000 + CDS 11292 - 12212 315 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 13 8 Op 6 1/0.250 + CDS 12222 - 12896 1062 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase + Term 12918 - 12962 15.0 14 9 Tu 1 . + CDS 12989 - 14230 1592 ## COG0477 Permeases of the major facilitator superfamily 15 10 Op 1 . + CDS 14350 - 15339 913 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 16 10 Op 2 . + CDS 15396 - 16484 1284 ## COG0812 UDP-N-acetylmuramate dehydrogenase 17 10 Op 3 . + CDS 16496 - 17731 913 ## gi|293189011|ref|ZP_06607743.1| conserved hypothetical protein + Term 17776 - 17830 0.0 18 11 Op 1 . - CDS 17966 - 18361 384 ## gi|293189012|ref|ZP_06607744.1| putative toxin-antitoxin system, antitoxin component 19 11 Op 2 . - CDS 18358 - 18846 521 ## Xcel_1527 transcriptional regulator, XRE family 20 12 Tu 1 . + CDS 18835 - 19071 220 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 19128 - 19171 -0.7 21 13 Op 1 . - CDS 19336 - 20418 1006 ## COG1816 Adenosine deaminase 22 13 Op 2 . - CDS 20422 - 21231 922 ## COG2267 Lysophospholipase 23 13 Op 3 . - CDS 21231 - 22436 1667 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 22633 - 22692 76.8 + TRNA 22618 - 22690 81.2 # Trp CCA 0 0 + Prom 22616 - 22675 76.2 24 14 Op 1 . + CDS 22726 - 23022 418 ## HMPREF0573_11146 preprotein translocase subunit SecE + Term 23033 - 23070 5.4 25 14 Op 2 45/0.000 + CDS 23100 - 23870 1281 ## COG0250 Transcription antiterminator 26 14 Op 3 55/0.000 + CDS 24032 - 24463 618 ## PROTEIN SUPPORTED gi|170782939|ref|YP_001711273.1| 50S ribosomal protein L11 27 14 Op 4 . + CDS 24533 - 25240 965 ## PROTEIN SUPPORTED gi|227497155|ref|ZP_03927403.1| ribosomal protein L1 + Term 25265 - 25308 17.2 28 15 Op 1 . + CDS 25435 - 26034 826 ## Arch_1185 hypothetical protein 29 15 Op 2 . + CDS 26027 - 26803 447 ## Arch_1184 cobalt transport protein 30 15 Op 3 . + CDS 26800 - 28257 244 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 31 15 Op 4 35/0.000 + CDS 28254 - 30074 260 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 32 15 Op 5 . + CDS 30076 - 31839 1695 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Prom 31906 - 31965 3.4 33 16 Op 1 47/0.000 + CDS 32046 - 32633 615 ## PROTEIN SUPPORTED gi|227494535|ref|ZP_03924851.1| 50S ribosomal protein L10 34 16 Op 2 . + CDS 32717 - 33106 431 ## PROTEIN SUPPORTED gi|227493262|ref|ZP_03923578.1| 50S ribosomal protein L7/L12 35 17 Tu 1 . + CDS 33249 - 34043 671 ## COG0789 Predicted transcriptional regulators + TRNA 34266 - 34337 77.1 # Asn GTT 0 0 + Prom 34264 - 34323 76.5 36 18 Op 1 . + CDS 34396 - 35577 474 ## gi|293189030|ref|ZP_06607762.1| conserved hypothetical protein 37 18 Op 2 . + CDS 35615 - 35971 227 ## COG3695 Predicted methylated DNA-protein cysteine methyltransferase 38 19 Op 1 21/0.000 + CDS 36161 - 37678 173 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 39 19 Op 2 16/0.000 + CDS 37675 - 38688 1716 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 40 19 Op 3 . + CDS 38782 - 39840 1982 ## COG1879 ABC-type sugar transport system, periplasmic component 41 20 Tu 1 . - CDS 39831 - 40049 91 ## 42 21 Op 1 4/0.000 + CDS 40030 - 41793 2800 ## COG2407 L-fucose isomerase and related proteins 43 21 Op 2 . + CDS 41964 - 43373 1751 ## COG1070 Sugar (pentulose and hexulose) kinases 44 21 Op 3 . + CDS 43348 - 44343 1176 ## COG1609 Transcriptional regulators 45 21 Op 4 . + CDS 44357 - 44788 624 ## Rcas_2834 RbsD or FucU transport + Term 44825 - 44859 -0.6 46 22 Tu 1 . - CDS 44856 - 45143 265 ## + Prom 45010 - 45069 4.2 47 23 Op 1 . + CDS 45121 - 45870 962 ## COG1349 Transcriptional regulators of sugar metabolism 48 23 Op 2 . + CDS 45881 - 46235 561 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Predicted protein(s) >gi|292822026|gb|ACYT02000003.1| GENE 1 116 - 955 1029 279 aa, chain - ## HITS:1 COG:L67726 KEGG:ns NR:ns ## COG: L67726 COG0656 # Protein_GI_number: 15673225 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Lactococcus lactis # 1 279 1 279 280 297 48.0 2e-80 MSEIPAYTLNDGLDVPAIALGTYNLRGASGVSSMVSGIEAGYRMLDSAFNYENEGALGAA VRRCGIPREELRLVSKLPGRHQRYDEAVYTLEESLMRAGLDYWDMYLIHWPNPKHGLYVE AFQALLEARDRGLVRSVGVCNFLPEHLERVHAETGEYPSVNQIELHPYFPQAAALEYHAQ VGVLTESWSPLGRKWRIVEDPAIVALASGVGVSPSRLILRWHYQLGTMPLPKSGNPERQR ENLDIFSFSLSSEQMAAISALGRPDGRQADQNPEYYEEF >gi|292822026|gb|ACYT02000003.1| GENE 2 994 - 2307 1221 437 aa, chain + ## HITS:1 COG:Cgl1463 KEGG:ns NR:ns ## COG: Cgl1463 COG1362 # Protein_GI_number: 19552713 # Func_class: E Amino acid transport and metabolism # Function: Aspartyl aminopeptidase # Organism: Corynebacterium glutamicum # 18 433 6 417 420 427 54.0 1e-119 MGGMAQLELDEVHANAVDYQHFLLDSPSPYHAAEVVAQRLVDAGFTRVDEKGAWDASPGG HVMVRGGAVAAWFVPETVDDDAGFRIVGAHTDSPAFSVKPSVQSTTPDGWGQIDVEVYGG MMWNSWLDRELTLAGRLVLNSGEVVLARTGPIARIPQLAIHLDRDVNPGGLKLDPQKHLH PVWTVDNPYGNVLEYVARTAGLDDASQVAAFDLILTPSQGPGFFGDKGQFIAASRQDNLS SVHPGLVALERLAAQGTPAGGDVTVFMCFDHEEVGSESRTGAAGPILETVLRRTAKALGR DEDGFERMLAASSCVSADAAHSVHPNYAGHHDPDNRPMMGRGPIIKINSKQRYATDAEGI ALWNRACAAAGVSSQNFVGNNAMPCGTTIGPITATRLGILTVDVGVGLLSMHSAREMSHV DDLLDLARVLKAYWQGA >gi|292822026|gb|ACYT02000003.1| GENE 3 2460 - 3134 873 224 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 1 220 1 215 216 181 43.0 8e-46 MCLRAEEGERIADKTVLKMMREMGLRCGIRRERAYHRYNSYKGDVGHSFDNIIGRDFKAD GPWQKLGTDVTEFKLSFGKAYLAPVYDFASKEIVAHSISMCPNLAQQQEMLQILMDAKPA GAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCIDNGATEQVFGHLKDEFFRGQD WQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQALQEAA >gi|292822026|gb|ACYT02000003.1| GENE 4 3320 - 3658 252 112 aa, chain - ## HITS:1 COG:no KEGG:Shel_05870 NR:ns ## KEGG: Shel_05870 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 1 112 57 169 171 123 66.0 2e-27 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGGAQALKPK PKGRPKGSVRAVPPTREEELQERVRKLEAQVAYLKKSIALKAQRRSQTGTKP >gi|292822026|gb|ACYT02000003.1| GENE 5 3924 - 4757 726 277 aa, chain - ## HITS:1 COG:Cgl2598 KEGG:ns NR:ns ## COG: Cgl2598 COG2186 # Protein_GI_number: 19553848 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 62 274 21 233 240 150 38.0 3e-36 MFSLLIFENWDVRFCCSARYTNSMLSDKLAQAISPQSPPETSHNRPVPTQIDSRSSVTMD AIKSYILRHGLHPGDRLPTESALCADLGVSRSSVREALRRLQALDIVTVRQGSGSYVGEM SMQPLVETLVLRAALDEINGAQSLHAIIDTRRALDLGIAVPLTRAMKGTTNPHLWELVEA MTEYAHSGSTYLEQDIAFHSGLLAYVENELMHQLVAAMWLVHQSVTPQLAAASRQEMEDT AEAHAAILRACEAGDLEAYTAAVEAHYAPLLAIIEGR >gi|292822026|gb|ACYT02000003.1| GENE 6 4756 - 6327 2575 523 aa, chain + ## HITS:1 COG:Cgl2599 KEGG:ns NR:ns ## COG: Cgl2599 COG0747 # Protein_GI_number: 19553849 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Corynebacterium glutamicum # 4 521 10 536 539 300 37.0 4e-81 MRMRKHFATGAALTAAAAMILTACGGGSSTTTSTDGGSKASDGPKGTITAGVAYETTDYG PITTSALGMGANWQVLEGLYRFNMADYSVSPALAAGDPEKISDTEYEVKLRDGAKFSDGT PVTAADFVASYERATSEKSIYRQFFTFVDSVEAKDDNTITIKLKHPFANLKERFVNVRVV PASMDEDSLKAKPIGTGPYKYENITATEITAVPNENYTGNEPAKVATLKWQSLKDDSARL AAAIGGTVDIMEAVPASAQDQLKGAGWNVESKPGYGNPFLMFNTQKAPFDKPEVRRAIVK AVDKQKLISSSLEGQAVEATSFLPEANPAYKKPSTDLSYDKDAAAKLLSDAGVSGLEVNL VSTDHPWVLSLVPQIKSDLEALGLKVNHTQMASSDLYANVTDVDNPTYDIVLAPGDPSVF GTDPGIIISWWNGDNVWTKKRDGWQASDPESFNKLQSIMDEAVQLDGDAAKAKWGEAQDL LAEKTVIFPLVFRNMITGSNPQKVEGFQPISSTGLQLLGVSAK >gi|292822026|gb|ACYT02000003.1| GENE 7 6320 - 6547 153 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGDSDMMKKTRKDTPTTMIGRATKRRPMSRRRLFTARPPFQRILAIRKEGWRPTVASASG WGSTPPFFVVPRGLT >gi|292822026|gb|ACYT02000003.1| GENE 8 6444 - 7397 1309 317 aa, chain + ## HITS:1 COG:Cgl2600 KEGG:ns NR:ns ## COG: Cgl2600 COG0601 # Protein_GI_number: 19553850 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 1 317 1 321 321 352 64.0 5e-97 MNNLLRLIGRRLVALPIMVVGVSFLVFFIMSLSPIDPAYSALGETATPEALEEYRVQHGL NDPFFVQYGHYLWNMLHGDLGTYGVGTSNHVTDLVAQALPITLQLTFLGLFFAVIIAFPL GVLAALYRDRWPDQVIRVFSVIGIGTPSFWLAALLVLGFVQKLPVSGPLPAFSEDPSGWF LRMLLPAIALAVPVIGQMTRVVRTSMVEELDRDYVRTAVGAGIPKRIVVARNVLRNALIT PVTVLGLRIGYLMGGAVVIEIIFSIDGMGKAVLLKGIQENWVTLVQGGALVVAIAFIVVN IIVDMLYLLINPRIRSV >gi|292822026|gb|ACYT02000003.1| GENE 9 7401 - 9449 3065 682 aa, chain + ## HITS:1 COG:Cgl2601_2 KEGG:ns NR:ns ## COG: Cgl2601_2 COG0444 # Protein_GI_number: 19553851 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Corynebacterium glutamicum # 358 661 1 306 318 451 74.0 1e-126 MNQKEKLGKVTAKGARFSRISAMSTGSKIAMGLLVLIVLVSILAPQVSPYGPDDIFDKWS APSGEHLFGTDHVGRDIFARVLFGGRYSLMIGLCSTLIALFFGAIIGSIAAVVRKSFSEA IMRVMDIVMAVPGIAMAAVSVLVFGRTLSKSGNTFGLVIVIICSIAFVYIPQLSRIVRAN VMAAYGEDYVRAVIVSGARAPWILTKHVMRNTAAPVLVFATVLVADAIILEASLTFIGSG LQATTVATWGNVLSEASSNLSVLLGKWWTAFFPGLFIMITVLCLNILSEGITDAMVAAPA SAAVAQVDKDTDREADKLLLDPRRAYAEQAESLQARLDDLESVEGKRTDRFEAHLEKTPL LEVNDLCIKFERHGDVNVVDHVSFKVRPGETMGLVGESGCGKSITALTIMGLIDPKAQIT GEILYQGENLLEKSAEERRALLGHEMAMIYQDALSSLNPAMLIKAQMKQLTSRGGTRSAE ELLELVGLDPKRTLESYPHELSGGQRQRVLIAMALTRDPKLIIADEPTTALDVTVQKQVI ALLNELREKLGFAMIFVSHDLALVAEVAHHITVMYAGQVIEQAPTKELLTHPTHEYTRGL LGAVLSIESGSGRLHQVPGTVPSPRDFPVGDRFAPRSSHPDYGLDIRPVLTEVGPEHVYA ALPPRDEADGFAQEMNGQEETR >gi|292822026|gb|ACYT02000003.1| GENE 10 9446 - 10264 296 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 33 257 17 239 245 118 30 6e-26 MSDNTPIIELKDVEVTFTSRTGSLFKPNKVYAVRGVNMRIERGQTLGIVGESGCGKSTTA NVMCGLQMPTAGQVFFNGKEVTKRSAAARREIGRVVSVVFQDPATALNPRMHVQDQLADP LRVHGIGDEASRAKRVRELISLVGLPSSALDALPGQLSGGQRQRVAIARALSIGPDAIIA DEPTSALDVSVRAQILNLLTDLKKELGLAMVFISHDIQTVRYVSDRIAVMNGGKVVEEGP AAQLLSDPEDPYTRKLLGAAPSLLHPNLEGEK >gi|292822026|gb|ACYT02000003.1| GENE 11 10267 - 11184 1384 305 aa, chain + ## HITS:1 COG:BMEII0862 KEGG:ns NR:ns ## COG: BMEII0862 COG0329 # Protein_GI_number: 17989207 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Brucella melitensis # 3 304 19 321 322 249 46.0 4e-66 MSSKIRGVVPPLAIPLKDGELDVPSLERHINRLIEAGLDGLFVSGSTGEVAFSTAERRAQ IQREAVRIVDGRIPLLVGVIDTETERVIENIKAVEEIGGATGVVATAPFYALGGETEVER HFRLLKENTSLELWAYDIPVCVHTKLSPDLLMRLGRDGIIDGVKDSSGDDVAFRWLCLAN EAAGHPMQLLTGHEVVVDGAYMSGADGSVPGLANVDPEGYVRQWQAYERRDWEAVRTEQD RLAELMRIVQVKGVQGFGAGVGAFKAALHLLGVFDSPEMPRPVAAIEGDNMEHVASVLRA VDLLS >gi|292822026|gb|ACYT02000003.1| GENE 12 11292 - 12212 315 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 7 298 8 308 323 125 29 3e-28 MTTLLALDIGGTKVGWGIVEAGDTYEVTQRGSIPTDAMRGGVDVAARICDLASSLVASHP QVAGVAVASAGVVDPSTGDIVSATGTMPGWGGTPLGVLLQEATGLKVRVLNDVHAHGLGE ATLGAGQPYRTVLSIAVGTGIGGALVEDHQVSFGSRGIAGHVGHIHHHFAPDMTCSCGRK GHIESFCSGSGITAWYDSLRSESDPEVDGGRALQELAQSGNALAAACFSRSAFALGEATA SLVNCVDPAVVILSGSMTRSGDIWWDALREGFAASAMTPVADTPILVGSLGGDAPLLGAV SFFLHA >gi|292822026|gb|ACYT02000003.1| GENE 13 12222 - 12896 1062 224 aa, chain + ## HITS:1 COG:Cgl2596 KEGG:ns NR:ns ## COG: Cgl2596 COG3010 # Protein_GI_number: 19553846 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Corynebacterium glutamicum # 4 220 10 229 232 184 51.0 1e-46 MHPLIANLKGKLIVSVQAYPGEPMRHPETMAQIARAAEIGGAAAIRCQGLSDISAIKGRV DVPVIGLWKEGHEGVYITPSLRHARACVMAGSDIVALDATGRPRLDGLSFAETVAALRED GTLVMADCGSFEDAQRAVDAGVDIVSTTLAGYTGDRVKTDGPDLELLREVVAAFPDVPVI CEGRVHTPEQAAAAMEAGAFAVIVGTAITHPTSITTWFKAAVEG >gi|292822026|gb|ACYT02000003.1| GENE 14 12989 - 14230 1592 413 aa, chain + ## HITS:1 COG:ECs0925 KEGG:ns NR:ns ## COG: ECs0925 COG0477 # Protein_GI_number: 15830179 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 23 390 25 380 402 145 32.0 1e-34 MSVPYSRAHAALRATGIVYVCLGFGTSAWLSRLPDVRDDLGLTPATIGTMLLIASLGSLL TLPTSGPIVTKIGARASGRIGVLIWALGIVCAGVGALNVSIPLATLGLVLLAAGNGLWGA TMNIEAGLVQAAVRRTVVPIIQAMYAVGMLGGALLGALASQMGMPLGAHLFGLAALELLA CGTAVGFYLTKEEVAALAPAQDKGDGGEAASNKAKGLTRVAWREKQTVLIALMVMSAGLM EGAANDWLNLSMVDGYGYSTAAASAAFAFFLLMMTVVRFASPRLEACLGSPMLLRITFSG AVVGLLLVAFAPHHLFAVAGIALWGIGSALGFPLGISALSVDPVMTPARVSVLSTVNYGA ALIGPPLLGLIADHIGYHRALAFVALPVLLAIVLAGQVPDRRGTKRTDLAFGD >gi|292822026|gb|ACYT02000003.1| GENE 15 14350 - 15339 913 329 aa, chain + ## HITS:1 COG:mlr2819 KEGG:ns NR:ns ## COG: mlr2819 COG0604 # Protein_GI_number: 13472500 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mesorhizobium loti # 3 328 2 308 308 104 34.0 2e-22 MARIIGYRRFGGVEVLEEGSVSLPAPGEGQVLVTVRAAGINPVDYKLFGGLTRPLEVLRT IVHPGRWFARGKERPLWGVGQDFAGVVAAVGPGATNVAVGDEVIGLLRAAPWQVREYGSL ATQLVISADNVVSKPASLSFDVAGGLGVAAQTAMGAMRSVKADAGDVIVVAAAAGGVGGL VTQLALARGATVIGVAGPSNADYLRSLGAIPVSYGEGIEQRIKGAVPSPVTAFIDCFGGY ASLAHRLGVPGERVGTLVPTPAIALRRARFTGGRDGKIADIATVADLIDRGTVSLTIAGT YPFELEQVRAAYSELMSGHVRGKIVITMD >gi|292822026|gb|ACYT02000003.1| GENE 16 15396 - 16484 1284 362 aa, chain + ## HITS:1 COG:Cgl0393 KEGG:ns NR:ns ## COG: Cgl0393 COG0812 # Protein_GI_number: 19551643 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Corynebacterium glutamicum # 3 361 23 365 368 268 47.0 2e-71 MTTLADLTTLRVGGPIAEHVRVSTTDALVDAVAAADAAGGPLLVVGGGSNLLASDAPFEG TVVDVQPFDEVASIIHEDPAGSVVVRAGAGTVWDAFVSWTLSEGLCGLEALSGIPGTVGA SPVQNVGAYGHEVSETIESVEAYDRLTGIVVRLLPSDLGFAYRSSAIKRSVGEPGLGDRP WGPTGRWVVLSVDFRLVRSPLSAPVMYAELARRLGVEAGERADASLVRSTVLDLRRGKGM VLDAEDHDTWSAGSFFTNPILPEAVAASLPEDAPRFSAGEGLFKTSAAWLIDHAGCGKGF HLPEAGDPPRASLSTKHVLALTNRGGATGADIEALARAVRERVFDAFGVILVPEPVTVGI TW >gi|292822026|gb|ACYT02000003.1| GENE 17 16496 - 17731 913 411 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189011|ref|ZP_06607743.1| ## NR: gi|293189011|ref|ZP_06607743.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 411 1 411 411 724 100.0 0 MWNYVPILIGVCGASVVVGIYWKLKKSSVSRLKLLRIALCAAFVLSLVSSSYVPLKSGAA LIWFWMAEAIVYLVLVRLGSRLKNAYQEFRLDPQQYRRSRLLCVNETVKPIIEALVPKGS WKDVRIGEPVSPGPLQIGLAIVASIVALIFFAITRVFFFSEEEYLRLPVWTFRYSLLFSA AIITFSYLMVLVLLAALRWLRILLSPIRFGKSLQCVVDWSGYGAALASCLVLVLPALFLI VDKVLNSSNHATFSLSLLFDAASVGALGGLVIGCFLGLFSLIDSRNVLYNSISPAAFFVI LDLGLFYRVCKLRPSILLYRYLESHSIEGVDSCDDVETAKLLYNECLSWECERYFAVVKK CDPSVGALLTNVDAVYFWTVVIVLLLFVVWRVVLTFKHAWGGDVERDISIT >gi|292822026|gb|ACYT02000003.1| GENE 18 17966 - 18361 384 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189012|ref|ZP_06607744.1| ## NR: gi|293189012|ref|ZP_06607744.1| putative toxin-antitoxin system, antitoxin component [Actinomyces odontolyticus F0309] # 1 131 1 131 131 233 100.0 4e-60 MSDPAPFVPRPRVARRHAPSFDAENFLRELDVIAHRVKRVTVVPVETFSADCPEYDSACM VIIRLAAFLEREEYAPYMDALTSPEKRALRTARNIAAHSGYQSMDDQLLWTAVTRNVPDM IERLRAAASRG >gi|292822026|gb|ACYT02000003.1| GENE 19 18358 - 18846 521 162 aa, chain - ## HITS:1 COG:no KEGG:Xcel_1527 NR:ns ## KEGG: Xcel_1527 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: X.cellulosilytica # Pathway: not_defined # 19 162 4 145 145 68 38.0 7e-11 MHYHGDMSRFHRDDAPSLVRAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVSSELLE RILRTADYRPSVPLARYASLITTYAQERGLGTLRVFGSVARGTDGFESDIDLIGTPTREL SLFELADIASFASELTGFPTEVHADTHVPEALRTAVDEAVAL >gi|292822026|gb|ACYT02000003.1| GENE 20 18835 - 19071 220 78 aa, chain + ## HITS:1 COG:Cgl0393 KEGG:ns NR:ns ## COG: Cgl0393 COG0812 # Protein_GI_number: 19551643 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Corynebacterium glutamicum # 22 77 310 365 368 66 60.0 1e-11 MIVHACTIGEVVVVCRPRCEAGDPPRAFLFTKHVLALTNRGGATSVDIEALARTVRERVL EAFGVTLVPEPVTVGIAW >gi|292822026|gb|ACYT02000003.1| GENE 21 19336 - 20418 1006 360 aa, chain - ## HITS:1 COG:mll3163 KEGG:ns NR:ns ## COG: mll3163 COG1816 # Protein_GI_number: 13472761 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Mesorhizobium loti # 27 352 4 321 324 153 33.0 5e-37 MEAPAVPNLTAPRPTPPGRRDLATLPKAHLHLHFTGAMRPTTMIDMARTQGVRLPPHLLH IDAASMPADGRGWFRFQRAYDSARHLVRSEAAMRRLIREAAEDDAAEGSVRMEIQADPTS YAPYVGGITPALEIIIDEARAASRDTGVDIGVIVAASRMKHPLDARTLARLAASFAGDGP GDVVGFGLSNDERVGSTASFAPAFRIARRAGLVGVPHGGELLGPSSVREVVSALAPARIG HGVRTSEDPALLHAVIDEGIALEVCPTSNVHLGVYTDFSQVPLPTLLSAGATVALAADDP LLFRSRLVAQYEVARDVFGLSDEDLASLARSSIDASLASPSRKAAWKADIDAWLAADPVA >gi|292822026|gb|ACYT02000003.1| GENE 22 20422 - 21231 922 269 aa, chain - ## HITS:1 COG:DR1537 KEGG:ns NR:ns ## COG: DR1537 COG2267 # Protein_GI_number: 15806547 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Deinococcus radiodurans # 9 269 25 279 282 138 37.0 1e-32 MHVSFERTAQEAPLGTVLLAHGYAEHSGRYAHLRSALTRAGYDVAYYDHAGHGTSEGPRA RVDVGALIRDFGDARRATLAHARTPDLFLFGHSMGGLIAAASTILDPTRLRGTVLSAPAL RPLPHVSPSQARRLLPIARLRPGLVVAKGASDMEVSPLSRDPQVQRDFDADPLTYKGGVP ILTGATMIIQGDEVLKRAARLRTPTLVMHGSHDLMADLRGSRELVRGARAAHPDADIHLR IIDGAYHELLNEPEGPGLIRDIIIWLGEH >gi|292822026|gb|ACYT02000003.1| GENE 23 21231 - 22436 1667 401 aa, chain - ## HITS:1 COG:BS_aspB KEGG:ns NR:ns ## COG: BS_aspB COG0436 # Protein_GI_number: 16079294 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Bacillus subtilis # 8 399 2 388 393 332 45.0 6e-91 MTNTPRTRVSDRFNAITPSATLAVDAKAKALKAAGRPVIGFGAGEPDFATPDYIVEAAVK AARNPAMHRYTPAAGLPALREAIAEKTLRDSGYEVSPADIVVTNGGKQAVFQAFAALLGP GDEAILPTPYWTTYPEVVKLAGATPVEVFAGADQDYKVTVEQLEAARTERTKVLLMCSPS NPTGSVYTPEELTAIGQWALEHGIWVISDEIYEHLLYEDAQTAHIVKLVPELADQAVILN GVAKTYAMTGWRVGWMIGPSDVIKAALSFQSHLTSNVNNVAQEAARAAVSGSLDAVNEMR VAFDRRRRLIVDMLRQIDGFDVPTPKGAFYAYPSVERLLGREIRGRVANTSGELADLILD EVEVAAVPGEAFGPSGFLRFSYALADDDLVEGITRVQELFA >gi|292822026|gb|ACYT02000003.1| GENE 24 22726 - 23022 418 98 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11146 NR:ns ## KEGG: HMPREF0573_11146 # Name: secE # Def: preprotein translocase subunit SecE # Organism: M.curtisii # Pathway: Protein export [PATH:mcu03060]; Bacterial secretion system [PATH:mcu03070] # 24 97 12 85 86 80 55.0 1e-14 MADRVASDAESSRRDRTKEEATRKRSAATKEQTKRPGFFGGIWLFFKQVIDEMKKVTYPT GSETWTYFLVVVVFVAAIMLFAGLLDFGFGKLSALIFG >gi|292822026|gb|ACYT02000003.1| GENE 25 23100 - 23870 1281 256 aa, chain + ## HITS:1 COG:ML1906 KEGG:ns NR:ns ## COG: ML1906 COG0250 # Protein_GI_number: 15828020 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Mycobacterium leprae # 53 254 19 228 228 167 45.0 2e-41 MSDEQYTEDQVLEAAQETVEQETVEAPARDAVEEVTEEVATEDTVSEEEAPASVEEEAIA KLRRKLYMSPGDWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNA KKRVRHVRIPGYAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVL EEAAEAAKDQPAPVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFER ETPLELGFDQVEKLEQ >gi|292822026|gb|ACYT02000003.1| GENE 26 24032 - 24463 618 143 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|170782939|ref|YP_001711273.1| 50S ribosomal protein L11 [Clavibacter michiganensis subsp. sepedonicus] # 1 142 1 142 143 242 83 3e-63 MAPKKKVTGLIKLQIAAGAATPAPPVGPALGQHGVNIVEFTKAYNAATESQRGNIIPVEI TVYEDRSFTFVLKTPPAAELIKKAAGIQKGSGTPNTVKVGSITMDQAREIGQSKMADLNA NDVEAAAKIIAGTARSMGINVEG >gi|292822026|gb|ACYT02000003.1| GENE 27 24533 - 25240 965 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227497155|ref|ZP_03927403.1| ribosomal protein L1 [Actinomyces urogenitalis DSM 15434] # 1 228 1 228 228 376 81 1e-103 MTKRSKSYRAAAEKVHADVLYTPFEAMKLAKETTVTKFDSTVEVVFRLGVDPRQADQMVR GTVSLPHGTGKTARVLVFAVGPRAQEAIDAGADEVGGDELIEKVAKGYTDFDVAVATPDL MGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVKEIKGGRIEFRVDKHANLAFIVGKASF TAEQLTENYAAVLDEVLRLKPTSSKGRYLLKGAVATTMGPGIPLDVTKVKDLIEK >gi|292822026|gb|ACYT02000003.1| GENE 28 25435 - 26034 826 199 aa, chain + ## HITS:1 COG:no KEGG:Arch_1185 NR:ns ## KEGG: Arch_1185 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 7 199 20 211 211 165 47.0 8e-40 MSQVAGSGVTKARSAVTIGAFTAVYFVLMWCSGMLGFFGPAFMFVGWIVGLLLNGSVVML MLVRSRMFGTLTIMGGIVAFLMVVTGHAWVTIPVALILGFLGDLIANGGGYVSAPRNIAA YMLFSLWMIGPLAPIFFAPDPYYEDVASQMGQDYADSMRALFSPAVISVWVVVAMIVACI GGLIGRFLLRKHFAKAGFA >gi|292822026|gb|ACYT02000003.1| GENE 29 26027 - 26803 447 258 aa, chain + ## HITS:1 COG:no KEGG:Arch_1184 NR:ns ## KEGG: Arch_1184 # Name: not_defined # Def: cobalt transport protein # Organism: A.haemolyticum # Pathway: ABC transporters [PATH:ahe02010] # 19 250 32 252 268 116 35.0 8e-25 MPEISLAEAAPGEATSKLDPRTKLLALLVLNALVMRASPTSTLLAVQLLAVVALAWEAGG RAAVRTGLGCLVCDVCSLGSPFLVAWLESVGSPRGLVLLIGTCSAIAFWFARFFAGFGLA LYVYRTTRIGQMKAALRAVHLPRVFVDALAVAFRVIPTVGSEAVAIREAMEMRGVDLGVR GVLRHPLVIAERFLVPLLSSIARVADDLAASSVIRGLGGPTRPTSLTRLRATAWDALALA CIAGVVAIEVGAYLGVLP >gi|292822026|gb|ACYT02000003.1| GENE 30 26800 - 28257 244 485 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 284 469 11 210 245 98 30 6e-20 MIDVESLSFSYVSELTGDRVEALRGVDVSVRSGTLTLVCGSSGCGKSTLMRALTGLVPQM TPGELDGVVRIDGRDLAEVPLTEVGHLCSSVFQNPRTQFFCDTVSEELAFCGENYGRDRE ALIEDSTRAAELMGISHLMDRKLSSLSGGQLQKVALACALASGAPVLLADEPTSNLDPDA IADVRRALAILKEQGMTIVVVEHRLRFLRGLADQVLLMEGGEVTRAWSGEEFYAMDDAHR QSLGLRTLVDPGPPEAWVPSRNSDKEASHEGGVRLSCRDLSFSYGNTPVFDGLNADFPAG QITCIAGMNGVGKTTLVRVLCGLAAPGSGTITLDGRATNRRQRRAACALVMQDTGRQLFS DTLAGELTIGASEASGEDADKLLGDFDLAHLGDRHPLSLSGGQKQRLVIAAARATGHRIV ILDEPTSGVDARHLTSITSTLRRIADEGAAVIVVTHDGEFASACADRLITLTPTGALCAL EGDHQ >gi|292822026|gb|ACYT02000003.1| GENE 31 28254 - 30074 260 606 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 375 590 136 351 398 104 34 8e-22 MTDTDEREDTTASSPSDPHADKIAAGDPRAAHLAGQRAFKELTAPIRGSMMLSRVLGLIY GALAVAPYVILVQLGEVLLEAARSGASPDRAEVMTLLMWLTGAFGLRYGIYFIALTVTHF ADVRFGHIVRSRMVSVLAAAPLAWFTSTNSGAVRKAIQDDTHDVHTVIAHAPVESAAAVS APLSLLIYAFVVDWRLGLLSIATLPVYGLLNAWMMRGMGEKTAEMDRHLTRVSSTMVEFV SGISVVKAFGTVGRSHERFTRAAEDFSRFYVDWCGPLLKGSALGQATVSPSLILLVSTAG GSALAASGIVSPVQVITCALIALVIPAAIEVLGTTTWAYQIAGAAALRIVDLLSVAPLPA EGSSVPGGADIEIDGVSFSYGATLALDDVSLTIPEGSVTALVGSSGSGKSTLATLVARFA DPDQGSVRIGGVDARDIAPDALYRHVSFVLQDPQLLDISVRDNIALGVPGASDEAVWAAA GAARIDDYLRSLPRGLGSVIGEDAHPSGGQAQRIAIARALLVDAPILVLDEATAFTDPEA EADIQAALTRLVQGKTVLVIAHRAASIAGVDQIAILDAGRIIAVGTPDELADHPYMRRMS APAKGH >gi|292822026|gb|ACYT02000003.1| GENE 32 30076 - 31839 1695 587 aa, chain + ## HITS:1 COG:MT1392 KEGG:ns NR:ns ## COG: MT1392 COG1132 # Protein_GI_number: 15840804 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Mycobacterium tuberculosis CDC1551 # 17 587 14 577 579 263 34.0 1e-69 MYGLISRLREPLSEQGRADFAQASVLSCIVGAVRGVSLVAFIPVSIALTSGNPAWGMRLG AWLVVLGVCAGTSFIVEYLLAIRSYSVAFDFLSNMHRAIGDKVASLPLGSFRADTAGKTS RLVSRELMVLGEIFAHMYSPLIAAIVTSVTMLVGITVFSPVLGLVCLAAIPVIGGGVWVA RRCLQSGASLKEPPARELSHRIVEYATKQGALRACGRSSSYEPLMRAEDAYGVAARRSLM RETVGQIVNGMAAQTVVVTLICAIGWLSVAGTVGPVEAVVSIGLLLRFTQILVDIGALGS AFETRRPVLDLSHDILSAPELPTHNGGRCGDEAPASSGASVALEGVSFSYEADHPVLQGV SFRVEPGTMTAIVGPSGCGKTTIARLIARFYDVDAGRVLVGDGDVRDWDTADLMAQLSLV FQDVYLFDDTLEVNVRVGNPDATRADIEEAARLSGVDEIVERLPLGWETPVGEAGRALSG GERQRVSIARALLKAAPIVLFDEATSALDPENESRVTDAMAALRRDASLIVIAHKLDTIT AADQIVVLSETGRVAQIGTHEQLYTQLDGQYRAFWDARSRAAGWRLV >gi|292822026|gb|ACYT02000003.1| GENE 33 32046 - 32633 615 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227494535|ref|ZP_03924851.1| 50S ribosomal protein L10 [Actinomyces coleocanis DSM 15436] # 1 195 1 210 210 241 65 6e-63 MPDTILRVGFFLTYGHVSGRRTMAKSDKVAAVAELVERFRAADAVLLTEYRGLTVGQLKQ LRRGLGENATYAVAKNTLARLAAKEVGLDFLAEDLKGPTAIAFVSGEPVEAAKTLRDFAK DNPALVLKSGAMDGAQLSAEAVKKLADLESREVLLAKAAGVLKAKIGQAAFAFNALPVKA VRTIDALREKQSEAA >gi|292822026|gb|ACYT02000003.1| GENE 34 32717 - 33106 431 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227493262|ref|ZP_03923578.1| 50S ribosomal protein L7/L12 [Mobiluncus curtisii ATCC 43063] # 1 129 1 132 132 170 71 1e-41 MPLMAKLSNDELIAAFKEMTLIELSDFVKLFEETFDVEAAAPAAVAVAAPAADAPAAEEK DEFEVVLESAGDKKIAVVKVVKNLAGLGLKEAKDLVDSAPSTIFPAAKKEDAEKAKAEIE EAGGKVTLK >gi|292822026|gb|ACYT02000003.1| GENE 35 33249 - 34043 671 264 aa, chain + ## HITS:1 COG:Cgl2557 KEGG:ns NR:ns ## COG: Cgl2557 COG0789 # Protein_GI_number: 19553807 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 6 263 2 250 251 145 35.0 1e-34 MSDDNTFHTVGEVAERFSLTVRTLHHWEARGLLAPAERSWSNYRLYSAEDCARVQRIIIY RATGMRLTDIKALLDSGESGISHLKRQRERLIAHRQETDKMIEALDILLEDAMNDNALTV EQIGEILGDADFAAHQARAEECYGETDDWKEWHRRTASWQAGDWQASTERIRRIESDMID AIRARVATGSDRAAELVDAHREALSEYFPVSPAKHYLISRAYLCDESFRSHYDSQQEGFA QWLADAIEHVAVARGVDTDDPQWR >gi|292822026|gb|ACYT02000003.1| GENE 36 34396 - 35577 474 393 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189030|ref|ZP_06607762.1| ## NR: gi|293189030|ref|ZP_06607762.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 393 1 393 393 673 100.0 0 MQAIADHAYHILIIAFVATTIVQAVVKIMRKPRKKKRGPVAPRESAADREKRMREHYAAF GERWREWLDQPRRRGDADRLVTAASIWGSPEQGASFPRRFHASQLGKVTVDKRRYLAMLD APVDAVQPRRELAPTSWATMRLDVWALHSKAAQKPRLMRVWLTKDRALVELHRTRVVKVD EILPSEVVGFVRGFTRLGPRTGKVDGLRWLPAETMELGAKPLWNTFRAMRDISCVAPEGS TVADALNAVDFHAFAFVAFRAESAWKEPCAHLRVLDCSGVTYQVGDAFSQESSDERWVPP GDDAAPSMGADGGEGARASRRGRGRPSRRRSLRRRRSVAEEAVASASDDQKVGKSQSVES PDREPEPLADTDLAVVPIDPREVLWAVEKMVEL >gi|292822026|gb|ACYT02000003.1| GENE 37 35615 - 35971 227 118 aa, chain + ## HITS:1 COG:Cgl0149 KEGG:ns NR:ns ## COG: Cgl0149 COG3695 # Protein_GI_number: 19551399 # Func_class: L Replication, recombination and repair # Function: Predicted methylated DNA-protein cysteine methyltransferase # Organism: Corynebacterium glutamicum # 3 78 7 80 114 66 50.0 9e-12 MGEELVEAVLRVVEEIPEGRVATYGMIARAVGTGPRVVGRIMHDWGGGVPWWRVVSVHGT FPTTVRGEGLSEWEREGIPHDPTRGKVLIKECVVEQDWLNAVARPIIENVQNNAELSD >gi|292822026|gb|ACYT02000003.1| GENE 38 36161 - 37678 173 505 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 274 476 28 219 309 71 26 1e-11 MTNLLELKGISKTFPGVKALSDVDLDLRPGEVLGLCGENGAGKSTLMKVLTGIHKSDPGG EIWLQGEKVDIQSPEHARDLGLSIIHQELNIVPDLTVAQNLYIGRPGTSKFGYVDDRKMV RDARELFERLNMDIDPTAHCRDLPVARLQMVEIARALSFDSKILVMDEPTAPLTTTETES LFELVRDFVCPTTGLIFITHRMPELTELTNRISVLRDGKYIGTVDTATTPMSEVVKMMVG REVPADARPTTKPLSDEAILRVEHLSTVKVVHDVSFEVKKGEIFGFAGLVGAGRTEVARA LFGADPHTSGDIYVHGKKVSIKGANDAVKNGIGYLSEDRKQYGLLLDKDLSFNTGMAAME HFTRGSVVATKKLREVAKDYVKKLRTRTPSVDVEVRSLSGGNQQKVVVAKWLERDTDVLI FDEPTRGIDVGAKDEIYTLLEDLAKQGKAIIVISSELPEVLRLANRIAVMAHGRIIGTLD NEEATQENIMELATVGQEEANGVHA >gi|292822026|gb|ACYT02000003.1| GENE 39 37675 - 38688 1716 337 aa, chain + ## HITS:1 COG:mlr3338 KEGG:ns NR:ns ## COG: mlr3338 COG1172 # Protein_GI_number: 13472896 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Mesorhizobium loti # 59 331 50 318 322 157 36.0 2e-38 MSTAVVDNKGLEAPSRFKTFMKNNMQLLLVTLALLVVLAFFSFAVPNFAFVNREVYLGIV LQSAYTGVMALGATFVIATSGIDLSVGTGLSLVAVMAGVFLAGDKMNLPLGLGLVLTLLV GMAIGLVNGLNVSILGLPPFIATLAMMMVARGLALIISDKASISIANPGYKFIASGTPIP YVANAVIIFVVLTVLATFLMNKTLLGRYALAIGSNEEATRLSGVNVRLWKIIIYVVAGAF MAIGAILYSARNGLVQPAEGVGMELNVIAAAVIGGTSLSGGRASIPGALVGAILMETLKK GLTMMGIAAEWQFVVTGIVLLLAVVIDNLRRIRENAA >gi|292822026|gb|ACYT02000003.1| GENE 40 38782 - 39840 1982 352 aa, chain + ## HITS:1 COG:mlr3334 KEGG:ns NR:ns ## COG: mlr3334 COG1879 # Protein_GI_number: 13472894 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mesorhizobium loti # 67 350 37 326 331 114 31.0 3e-25 MRPIGRIFAAAAVGSMALGLAACTTSTDSSSSSDAKPSASSGSAKVDTSGNAQDWEKAAV KGDGTKTIYLVSKGFQHRFWQAVKEGAEQAGEELGYKVNFVGPQDETKVTEQTDQLKSAL DSGPAAIGFAALDSKAAADLLTEIHGKGIPVVAFDSGVESDIPVTTVQTDNKAAAAEAAK HMIELLKDKKGSVGMVCHDSTSTTGKQRCEGFKEYFKANAPADLKLLDEQIAGEVTKAAD TSLSIIQANSDIVGMYGSNEAAASGIVQGVAESGKDVTVVGFDSGKTQIDAIKAGTEAGA VTQSPVKIGYYTVKAAVAALNGAELPKVIDSGFAWYDKTNIDNAEIKANLYE >gi|292822026|gb|ACYT02000003.1| GENE 41 39831 - 40049 91 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRGWFVIIPSSLLKTSMSERGGARPLGSFEWKSAGSAGLAPPKWSGTRGGPPVQFVTSPA PASCPMELSAHS >gi|292822026|gb|ACYT02000003.1| GENE 42 40030 - 41793 2800 587 aa, chain + ## HITS:1 COG:SP2158 KEGG:ns NR:ns ## COG: SP2158 COG2407 # Protein_GI_number: 15901968 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 1 587 1 588 588 858 69.0 0 MTNHPRIGIRPTIDGRRKGVREALEEQTMNMAKSVAELFTSNLRYPDGSPVEVVIADTTI GRVHEAQACAAKFRANNVGLTLTVTPCWCYGTETTDMDPAMPHAIWGFNGTERPGAVYLA AALAGHAQIGIPAFGIYGEHVQDADDTSIPEDVRTRLLDYATAGLAVAQMKGEAYLSMGS VSMGIAGSVVDPDFFGSYLGMRNEYIDMSEFTRRIEEGIYDPEEYEQAYQWIRENFKQGK DWNPPEWQYPEKHEDWWKFVTKMTIIARDLMHGNPRLAELGFEEEAGGHGAIVAGFQGQR QWTDHFPNGDVLETILNTNFDWTGIRQPSVVATENDSLNGASMLFGYLLTNTPQIFSDVR TYWSPESIEKATGWKPEGRAAAGLLDLRNSGSTTLDGAGKAVRDGENVIKPWYEVTEEDR EATLAATTFHPASTGYFRGGGFSTHFRTSGEMPVTMCRINLVRGLGPVMQIAEGYTVELP DEVAFTIEERTNIEWPTTWFVPNLTGEGAFKSVYDVMNAWGANHGAISYGHIGGQLITLA SMLRIPVNMHNVPAERVFRPKAWSLFGTESLEAADFRACETFGPMYR >gi|292822026|gb|ACYT02000003.1| GENE 43 41964 - 43373 1751 469 aa, chain + ## HITS:1 COG:rhaB KEGG:ns NR:ns ## COG: rhaB COG1070 # Protein_GI_number: 16131744 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 5 466 7 465 489 269 35.0 1e-71 MTTVLAVDLGSASGRVLAGTLHDGRLDVTDIHRFKHEARRREDGTLTWDVATMEAETITG LKKALEQFPDARAVSIDTWGVDWAPLDENGELVGDVIAYRDERTSRTLDAFRDRIGDREF FDLTGNQPATINTANQLFAYLQENPADAQCVAAALFLPDYFAYRLTGVVGWSRTIVSTSG LLTPGGGDFNDEVFNRLGIPRGWFGDLAADRTVVGPCTVPGLETLTVVRGGAHDSACAVH GLPIEEGKRAYFLSCGSWSVLGAIEDEPLMSDAAFDLGITNEGRTDGGVRPLFNITGMWI LQEIQRQWEREGTPTDTDELVAQARELPAASGVFDPDEEAFATPGDMQRKIDEALDAQGA ARPDSMAGYVRVIIESFARRYARAIGELTEATGKAPDQLNLVGGGARNRLLCDLTAQISG VTVVRGPIEASTFGSLLAQLETIGALAEEDRATVIAASAATHVHVPTRS >gi|292822026|gb|ACYT02000003.1| GENE 44 43348 - 44343 1176 331 aa, chain + ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 9 328 4 332 333 161 35.0 2e-39 MSTSRPAAKKVSLADIARRAGVSTNTVSRVVRGDPEVSEKTRARIAKLVEELGYVPNYAA RALAAKRTNVLQVVLAAPMFHGHGRVLLSILNASSQAGYHVSLSYAYGPDGQLRNDFAPF DVDGVIILGGQDPTIDVAIEAGKRFPTVLVLTSEKGLDGISTVAVDNVRGARLATEHLLA QGLTDVVHISGPAGWSDAQMRRIGYEQACASYDIEPVVLEPDSWDSRDGYDVMRAAGRLP QGVQTANDQLALGAMRYIYERGGVVPRDVRVVGFDDIDGADSYAPPLTTIHQPFDRLGRT AVRLVRSLMGGGPSQDIVLDPELVIRASSHL >gi|292822026|gb|ACYT02000003.1| GENE 45 44357 - 44788 624 143 aa, chain + ## HITS:1 COG:no KEGG:Rcas_2834 NR:ns ## KEGG: Rcas_2834 # Name: not_defined # Def: RbsD or FucU transport # Organism: R.castenholzii # Pathway: not_defined # 1 142 1 139 139 128 49.0 5e-29 MLYGPMTHPQFLRALAAAGHGSKILLADANYPHTTGVNPRCELISLNLAPGLLDVSQVLD VLKRTIPIERAEIMTPAPDADPVEIPIHDEFRAALPGVEFGEISRWDFYDAARDENVGII VATGEQRLYGNLLLTVGVRQPGE >gi|292822026|gb|ACYT02000003.1| GENE 46 44856 - 45143 265 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSSARPMGHLFTESATFFVAFSFVKKRIVTKTKVCNITRRGFTQVHTGRTNVQDNAVHF SLFKDIAGINALVGSSYEPPTSYETVFSTPESPFS >gi|292822026|gb|ACYT02000003.1| GENE 47 45121 - 45870 962 249 aa, chain + ## HITS:1 COG:CAC1430 KEGG:ns NR:ns ## COG: CAC1430 COG1349 # Protein_GI_number: 15894709 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Clostridium acetobutylicum # 7 242 4 238 246 133 33.0 3e-31 MGRAEERTNYILDRLAREGEVSVAQLASDLGVSPVTVRASLKSLDEQGYLVRTHGGARPT TFRNIHLRQNDRVEIKERIARAAADMIHDDDRIMIEAGTTCALIVKYLAGKRGVQVLTNS VLVFANARSNPNLNITLTGGHFRAESESLVGPVAERAINDFNARVAFLGTDGFSVDRGLT TQLVEGGQVGSIMRTRAQETWLLADSSKYEEAGFVSFMGIDEVTGIITDDEIPEESIKEL AERTKLRIV >gi|292822026|gb|ACYT02000003.1| GENE 48 45881 - 46235 561 118 aa, chain + ## HITS:1 COG:AGc2641 KEGG:ns NR:ns ## COG: AGc2641 COG0508 # Protein_GI_number: 15888757 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 107 6 113 457 70 41.0 1e-12 MATIVVMPQLGNSVESCIIVEWMIAEGDTVSVDQTLASIETDKSTMEVPSTAEGTVLKLL WEEGDEVPVKDPLIIVGEPGEDISGLVPGGDAAPAEADAPAEQVAAAPEAGAPAFATE Prediction of potential genes in microbial genomes Time: Tue May 17 05:46:18 2011 Seq name: gi|292822016|gb|ACYT02000004.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.12, whole genome shotgun sequence Length of sequence - 12321 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 30/0.000 + CDS 2 - 799 1294 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 2 1 Op 2 . + CDS 816 - 2183 694 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 3 1 Op 3 . + CDS 2217 - 4670 4056 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 4 2 Op 1 . + CDS 4842 - 6149 1868 ## Csac_0867 hypothetical protein 5 2 Op 2 10/0.000 + CDS 6177 - 7199 1560 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 6 2 Op 3 . + CDS 7299 - 8900 2334 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 7 2 Op 4 . + CDS 9110 - 9895 505 ## gi|293189049|ref|ZP_06607780.1| hypothetical protein HMPREF0970_00086 + Term 9928 - 9980 22.0 - Term 9916 - 9967 18.0 8 3 Tu 1 . - CDS 9991 - 11457 679 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 - Prom 11500 - 11559 4.8 + Prom 11747 - 11806 3.7 9 4 Tu 1 . + CDS 11881 - 12066 81 ## gi|293189051|ref|ZP_06607782.1| conserved hypothetical protein + Term 12225 - 12272 1.2 + 5S_RRNA 12057 - 12125 97.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. Predicted protein(s) >gi|292822016|gb|ACYT02000004.1| GENE 1 2 - 799 1294 265 aa, chain + ## HITS:1 COG:BH0778 KEGG:ns NR:ns ## COG: BH0778 COG0508 # Protein_GI_number: 15613341 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus halodurans # 26 257 199 429 436 155 37.0 8e-38 IGGRVSVADAGRTAEAAPATAVAAPAAAAADFPGASTSAPLKGVRKVVAKRMMESLTSTA QLTLNTTANAAGILAMRKKVKNADEALGLNKITLNDLVCFAVSRTLLKYPVFNAHLEDGV LTEFEQVHLGFACDTPRGLLVPVIRSAQALGLKAFSDEAKRLAGGAIDGSLSPDFLSGGT FTVSNIGSFGIETFTPVINLPQTAILGVGAITPRPTVAADGSIGVEQRLNLSLTIDHQVI DGADGARFLRDLVAAIENIDVTVLA >gi|292822016|gb|ACYT02000004.1| GENE 2 816 - 2183 694 455 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 452 4 450 458 271 35 1e-72 MSDTHFDVIVLGAGPGGYLAAERLGHAGKKVALVEEQYLGGTCLNVGCIPTKTLLNGAKN YLHAKEASQFGVDAQGVAVNWTQMQAWKDQVVKGLVAGVAATERKAGVTVINGRGHLDAP GRVTVEGTTYTSDHVIIATGSVPAMPPLPGTQDNPALVDSTGILSLPEVPARLAIIGGGV IGVEFASLYSTLGSQVTVIEMAPEILPFMDDDLAAKARAAMKDVTFELGCRVESLDGGTV HYSKGEEKLSVEADVVLMAVGRRPATEGWGAQEAGLEINRGVVVDDTMRTNLPNVWAIGD VTGRSLLAHAAYRMAEIASANILDPAAKKRGEVMRWHTVPWAVFSIPEAAGVGLTESAAK REGRDVLVAKVPALMSGRFIAENGFKAPGEAKILVDPTTHQVLGIHVLGAYAAEMIWGAQ AVLEMELTVEDLRQVVFPHPTVSEVIREAAWAVKL >gi|292822016|gb|ACYT02000004.1| GENE 3 2217 - 4670 4056 817 aa, chain + ## HITS:1 COG:SSO1526 KEGG:ns NR:ns ## COG: SSO1526 COG0022 # Protein_GI_number: 15898354 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Sulfolobus solfataricus # 466 787 1 319 324 230 42.0 8e-60 MTQSLIIDPNEVRRPGYVKFPEVPVNQYTFDRDTEIARYGEKGMVQMLHDMIVVRTFESM LDSIKKTGAWEGVEYNHPGPAHLGIGQESAYVGQSYVLSPDDFIFGSHRSHGEILAKCYS AMHQMDESQLEGIMKDFLGGETLSYAEKIDYKDTKDLTENFILFGALAEIFARKSGFNRG LGGSMHTFFLPFGSYPNNAIVGGSAPVANGAALFKRINRKPGIVISNVGDAALACGPVWE AMNFASMDQFRSLWREEDGGNPPILFNFFNNFYGMGGQTFGETMGYEILARVGAALNPEA MHAERVDGLNPLAVADATTRKKKILEEGRGPVLMDTITYRFSGHSPSDASSYRTKEEVEL WEQVDCIKEYSNLLISNGLTTQDEIDGYTASLTEKLVKVLKLSIDDETTPRVADGYIDSV MFSNEKVEAFDDATPEIDLEDNPRVKALAKKVRTSVDENGKPVSKMRMYQFRDGLFEAML HRFKTDPTMAAWGEENRDWGGAFAVYRGLTEALPYRRLFNSPIAEASIVGAGVGYAMAGG RAVVELMYCDFLGRSGDEVFNQMAKWQSMSAGLLKMPLVLRVSVGAKYGAQHSQDWSALV AHIPGLKVYFPTTPTDAKGMLNLALAGTDPVVFLESQKLYDKGEDFEPGGVPEGYYETEE GEPAIRREGTDITIAAYGATVYKALEAADVLAEKYGLSAEVIDLRFVAPLNYDKLIASVK KTGRLVLTSDAVERGSFLNTVAANVQTLAFDALDAPIAVVASRNGITPGPEMESYFFPQV SWILDAIHERVLPLPGHVPTTKHATEAEIARLNRAGL >gi|292822016|gb|ACYT02000004.1| GENE 4 4842 - 6149 1868 435 aa, chain + ## HITS:1 COG:no KEGG:Csac_0867 NR:ns ## KEGG: Csac_0867 # Name: not_defined # Def: hypothetical protein # Organism: C.saccharolyticus # Pathway: not_defined # 35 415 49 428 436 338 42.0 3e-91 MDITNDPAATPAQRIEALRAGVADEHFPSWVPESNNHIHTCFSFSPYTPTHAALLARRNG LRVVGSVDHDSIGAAAEMSEATRILGMGSVTGFEIRARFGEGTPLAQRKLNNPDSEGVAY MTVQGVPAPAREKVAQWLAPKRAARLERTLAMAESANKILTDLGLEPFDPQADMVGISQY ANGGGITERHLLAAMASALIRGFGRGPALVQGLDSMGVEVPESLARVLSDADNPHLMYDL LGVLKANYLDRIYIQPTDELPSAAEVVAFADSVGAIATYAYLGDVSASPTGDKKAEKFED DFLDELFEYMESIGLRAVTYMPPRNTPEQLERIHALAAAHGMLEISGVDINQPRQRFTCE ELRRPEFADLNEATWALVAHEALSSVDPSLHLLGRTGRLTPEALAERISEYAPLGRAIAD GEDAAAVAARATSIN >gi|292822016|gb|ACYT02000004.1| GENE 5 6177 - 7199 1560 340 aa, chain + ## HITS:1 COG:PM1968 KEGG:ns NR:ns ## COG: PM1968 COG1028 # Protein_GI_number: 15603833 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Pasteurella multocida # 75 339 3 259 259 167 38.0 2e-41 MSNAPEVRGLFLKALGRPVIVAPSSAEPTVTFDGPLTEVCPCSLKETELPVVVRAGEETF EVRATATGERAINGRVALVTGGAQGFGAEIARGLVDAGCFVYVADLNGEGAAAKAAELGG EGVAHPITVNVADEESVAAMASEIERVTGGLDLVVSNAGIVRAGSVLEQDASAFRLSTDI NYVAFFLVTKHLGQLLARQHSTAPEWLTDIIQINSKSGLVGSNKNAAYAGSKFGGIGLVQ SFALEMVAHGVKVNAICPGNFYDGPLWSDPDRGLFVQYLNSGKVPGAKTVADVKEFYEAK VPMRRGAQGIDVLRAIFYIVEQEYETGQAVPVTGGQVMLS >gi|292822016|gb|ACYT02000004.1| GENE 6 7299 - 8900 2334 533 aa, chain + ## HITS:1 COG:yggP KEGG:ns NR:ns ## COG: yggP COG1063 # Protein_GI_number: 16130832 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 314 531 84 318 329 72 28.0 3e-12 MTQIPSTQYAIQIVGKEEFVVNPAKPVDPVGPTQIMLEVEACGICFSDTKLLHQFDGHPR KSDVVAGIDLDALKDIPSYHPNQEAVTPGHEPVVRVVQVGEEVTHFKVGDRLLVQADWKH LRTAKSNGAFGYNFDGALEEYVVVDERCVVSPDGEEFLIHVSEGPSAAAVGLIEPWATVE GSYAWAERNHVADGGRLLVVGEGDIDALTAEHKPAEVVRVAADAIEGVEGEFDDIVFFGA DADAIEKAALLIGTRGTMCVVLGGEKISRKVSLDIGRVHYDFTRFCGTTGSDPREGYAWI PANGDLRENDRCVFVGAAGPMGVMHTMRAVTSGVPGLSVVGTDLSDERLENLTKVVGPTA EKNGVPLDIVNTSSTPLEYGYTYATCLVPVPALVSQAVDLLAEGGILNAFAGIPAGTFGD FDLQGIIERQIFMLGTSGSDVSDMRTVLRKIEAGIIDTTISLWAITGMAGFGDAINAVMD RTSGGKIMVFPMMHDLSLTPVSELAEKLPTVAAKLDAAGLWTKEAEEALLATR >gi|292822016|gb|ACYT02000004.1| GENE 7 9110 - 9895 505 261 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189049|ref|ZP_06607780.1| ## NR: gi|293189049|ref|ZP_06607780.1| hypothetical protein HMPREF0970_00086 [Actinomyces odontolyticus F0309] # 1 261 10 270 270 482 99.0 1e-135 MQVWMVGQLDPRTPHAADLFAQDSECLYDAFLSVLIGTGLGFIDYDDIRFHHGLYAFDFF VGDVHAPPRRGGADGPGESRAAGQLSPAVATPAMCHAIVDTWLGDVGRHIHFVASVIASV ATLELVADVRVDECVFEVDLPPDYARSTANWPWEDGSLPIGSLDACLLAEGPLIHLEARP RYKGQALSPSGFTEALASAVQMGLAVESSSAFAFGAAATLRAPHGGPEMLGWAADAVARA LSACGHTGGVQIRTRFAHAPS >gi|292822016|gb|ACYT02000004.1| GENE 8 9991 - 11457 679 488 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 15 454 7 445 456 266 36 7e-71 MNGTLRPAFDLAGTLDTISGFMYTYLLVALLIGVGLYFFVRTRALPLRLFKEAIRVVTEP PHEEGEVSSFRALMVSTASRVGVGNIAGVATAVTLGGAGSVFWMWVIATLGGASAFIEST LAQIYKKQGPHHSYGGPAYYIQTALKQNWLAALFAVVLILTYMGGFNLLASFNVADAFTQ YSWANEWTPWIIGAILAVLMAASIFGGTRRLTDVTGFLVPVMAIIYLGVGLVVVALNYQN IPAMFSAIFAGAFDFPAIFGGFAGSAMMYGIKRGLYSNEAGVGSAPNAAASASVSHPAKQ GLVQMLSVFIDTMVICTLTAFVVLSSGVGEDGGVTGAPLVKDAMATVLGQPVAQVFVSVA LFLFAFTTLVGNFYYAEVNFRFLLRNVHMKHWMLTVFRAVAALLVFAGALLKFEVAWNLG DILMGLMALINLPVIVILGNQAIRCATDYVAQRKAGLEPSFKASSIGLNPDELDFWKDDA PAAEKTNA >gi|292822016|gb|ACYT02000004.1| GENE 9 11881 - 12066 81 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189051|ref|ZP_06607782.1| ## NR: gi|293189051|ref|ZP_06607782.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 6 61 1 56 56 67 98.0 2e-10 MRYSRVRLIVWVLFVNSIVCLFVCFYACFLFLSVFGWDCWLALFGWLVFLGFNVFVFVRR V Prediction of potential genes in microbial genomes Time: Tue May 17 05:46:44 2011 Seq name: gi|292822014|gb|ACYT02000005.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.13, whole genome shotgun sequence Length of sequence - 5958 bp Number of predicted genes - 4, with homology - 1 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 53 - 316 131 ## gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 + SSU_RRNA 306 - 1802 99.0 # EU071474 [D:1..1501] # 16S ribosomal RNA # uncultured Actinomyces sp. # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Actinomycineae; Actinomycetaceae; Actinomyces; environmental samples. 2 2 Op 1 . - CDS 1837 - 2136 289 ## 3 2 Op 2 . - CDS 2294 - 2512 88 ## - Prom 2618 - 2677 80.4 + LSU_RRNA 2904 - 3392 91.0 # AF114033 [D:2856..5972] # 23S ribosomal RNA # Streptomyces nodosus # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces. + LSU_RRNA 4134 - 5152 91.0 # AM420293 [D:1406414..1407578] # 23S ribosomal RNA # Saccharopolyspora erythraea NRRL 2338 # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Saccharopolyspora. 4 3 Tu 1 . - CDS 5264 - 5533 144 ## - 5S_RRNA 5414 - 5524 89.0 # Z50061 [R:1..120] # 5S ribosomal RNA # Amycolatopsis orientalis # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Amycolatopsis. Predicted protein(s) >gi|292822014|gb|ACYT02000005.1| GENE 1 53 - 316 131 87 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293188963|ref|ZP_06607697.1| ## NR: gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 [Actinomyces odontolyticus F0309] # 3 84 1 82 84 102 98.0 7e-21 MGVGRLFTCRRELVCGFVVVVHCSGGWVFGLVFWGVWVLFVNSIVCLFVFYACFLFLSVF GWDCWLALFGWLVFPGFNVFVFVRLAS >gi|292822014|gb|ACYT02000005.1| GENE 2 1837 - 2136 289 99 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLATTIQITNNPPHTPTPTPTGWPAAQATTTTSGGRSHGVEREPDSVLECHKTFMPNPQS RTHTHHPHQVAYTCRHKKTTQHTNHKATMLHCSPQNVAS >gi|292822014|gb|ACYT02000005.1| GENE 3 2294 - 2512 88 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSPGRKIQYGPTTPNTQRPPPLARIWFSLLRFRSPLLTEYLFLRVLRCFTSPRSPHHPI HVQMMVTQHNPG >gi|292822014|gb|ACYT02000005.1| GENE 4 5264 - 5533 144 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCCGGVLLSHNLSVAVPLALPGLASRFGMGAGRFPGAMTTTSVGVQHAPPWCCGGGCGLI VVCIVVAAVVLVFLVHPNGVLGCCLVLAH Prediction of potential genes in microbial genomes Time: Tue May 17 05:47:10 2011 Seq name: gi|292822001|gb|ACYT02000006.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.14, whole genome shotgun sequence Length of sequence - 13498 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 6, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 252 - 362 89.0 # Z50061 [R:1..120] # 5S ribosomal RNA # Amycolatopsis orientalis # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Amycolatopsis. + Prom 500 - 559 1.8 1 1 Tu 1 . + CDS 589 - 1113 709 ## COG0431 Predicted flavoprotein + Term 1220 - 1285 24.1 - Term 1215 - 1262 19.4 2 2 Tu 1 . - CDS 1289 - 3034 1698 ## COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase - Prom 3165 - 3224 2.0 + Prom 3101 - 3160 3.1 3 3 Op 1 25/0.000 + CDS 3187 - 4329 1303 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 4 3 Op 2 42/0.000 + CDS 4329 - 5045 209 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 5 3 Op 3 10/0.000 + CDS 5042 - 5920 619 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 6 3 Op 4 . + CDS 5917 - 6774 804 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 7 3 Op 5 . + CDS 6787 - 7698 1012 ## COG0313 Predicted methyltransferases - Term 7653 - 7681 -0.2 8 4 Tu 1 . - CDS 7717 - 8274 766 ## COG1335 Amidases related to nicotinamidase + Prom 8249 - 8308 3.9 9 5 Tu 1 . + CDS 8406 - 10247 2615 ## COG0143 Methionyl-tRNA synthetase 10 6 Op 1 1/0.000 + CDS 10370 - 11836 1534 ## COG1621 Beta-fructosidases (levanase/invertase) + Term 11861 - 11910 4.3 + Prom 11955 - 12014 2.6 11 6 Op 2 . + CDS 12049 - 13498 2237 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Predicted protein(s) >gi|292822001|gb|ACYT02000006.1| GENE 1 589 - 1113 709 174 aa, chain + ## HITS:1 COG:Cgl0985 KEGG:ns NR:ns ## COG: Cgl0985 COG0431 # Protein_GI_number: 19552235 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Corynebacterium glutamicum # 1 173 1 172 188 99 35.0 2e-21 MTSVAIILGSVRPVRAGEQVVRWIEEQARQVDGVQTVFFDLRDYQLPLFAEEMPPSMQAP ELPEAVRLRTNIEANDAVIFVTPEYNHSVPAALKNAIDYLPPATLKEKAVGLVGYSWHGA VKPLEHLREIVSILGAEVREQQVGINLGSDFRDGVFQPSDELNAQIRALLASLA >gi|292822001|gb|ACYT02000006.1| GENE 2 1289 - 3034 1698 581 aa, chain - ## HITS:1 COG:ML0192 KEGG:ns NR:ns ## COG: ML0192 COG1928 # Protein_GI_number: 15827001 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Dolichyl-phosphate-mannose--protein O-mannosyl transferase # Organism: Mycobacterium leprae # 68 580 21 509 510 219 30.0 2e-56 MDTANAHNDTIDKTENLLEQEATGDEIASKLPEHEPATDDEAPAQPAEASSTPPTNGWTQ RLSTPAAGWVATAIATLIATLIRLPGLGNVRTLIFDETYYVKDAWSLLTLGYEGTWAKDV DTAFANGDTSGLSAVGGYPVHPPTGKWLIAMGMKFFGQADPVGWRIAAAICGVITVFLLC RLAQNLFHSPAITLLAGLFLATDGMAIVMSRTSILDGFLAMFVLAAFLCVVKDQHMAQPK LSAKLATWDGLGEPRQGWHSAWAHLTLRDRRPFAIGPNAGNRPWLFAAGICAGLACSVKW SGIYVLAFLGLFVALREVTCRWRAGHPTPIRGALLADVWWAFVLMVPTAILTYVASWFGW FTHSAAHGHGRSGIAGFAGQLADLWLYHKEMWTFHNGLNTPHKYQSSPFTWLAQVRATSF YWNNGEAMMGCRSGKCASDVVALGNPLLWWVGIGALLLVLVATFYYRNWRVGIIALGYIA LYVPWLAYAHRTIFVFYTVAFAPFVALAVAWMIGLLAGWATIDGSAEPAPATRRTQITGW AFAALVTIAILGCAIYFMPLWRGDVIDYDFWRAHMWLQSWI >gi|292822001|gb|ACYT02000006.1| GENE 3 3187 - 4329 1303 380 aa, chain + ## HITS:1 COG:AGl3262 KEGG:ns NR:ns ## COG: AGl3262 COG0803 # Protein_GI_number: 15891751 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 82 365 50 333 337 117 30.0 4e-26 MFSLIRRGLAAASGLTMAIASLAACSPSSSSHGLAVVATTTQICDYVTQIAARSADISLD KTDAAGKNSHVGATPDGAALTMSLTCLLAPNASAHEHEMTPAQTKALSEADVMAVSGVDL EHFLDDAVVSSGFKGRMVVTSGVLTAADIDNPGAADEQGAYTIDRGSERVDVAPWPFPPE EAGEEPEFRFDPHVWTSPKGAHVQVANLGAGLAAAVPEAASSINAATASYLEDIDALDQW TAEAIETVPAGQRVLFTSHDAFGYFSRDYGIRFIGAALSDFNEQQDATADHIAKAVAAVK ESGAVALFAENSNNSKSIEAIARAAGVTPIVGEDAMYGDSLGPDGSEGATYVGSIVHNVR AVTQAWGGTVPDLPERLKDQ >gi|292822001|gb|ACYT02000006.1| GENE 4 4329 - 5045 209 238 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 203 1 209 311 85 29 2e-16 MARLVSFRDAALGYGHAPALTGLTLDVFGGQALALVGPNGGGKTTLMRGIAGGCSLLSGS VEVEAERIGLVPQSADLDLTFPVSAAEVVTMGLVAEAGWGRRITADMRARVGASLDRVNL ADRASHRFGTLSGGQRQRVLVARALVARPDLVMMDEPFNGLDAPSRDIITGLIADLTADG IGVIVSTHDLSLARDVCSRACVLASRLVALGLTDEVLAPNILARAYGASADEAIASLS >gi|292822001|gb|ACYT02000006.1| GENE 5 5042 - 5920 619 292 aa, chain + ## HITS:1 COG:SMc02506 KEGG:ns NR:ns ## COG: SMc02506 COG1108 # Protein_GI_number: 15966782 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Sinorhizobium meliloti # 5 208 16 217 284 73 28.0 5e-13 MIAPYLLRPIIVLGLLAIAAGPASTLVNLRRAEFSAETMVHGVFPGIVVGMALGGRDAII PGGAVCAALVAAALTVASRKPRHSEAMTAVLLTAFFSLGIVISLRIGDMSGQLESLMFGR LLDITLSRMGASAVVLVLAAALLALTWRAQVAVAFDREASRVSGIPVTWIDIAFNAALGA IVVAASTAVGVLLVVGYLIVPGAFGRLLAAGPRSMVLLAGTCALVGGWAGFGASLLRAPR SLSPQACVALGVLVCFAGACVLREIRARRVRPRPAARETARETSAAGGGEQQ >gi|292822001|gb|ACYT02000006.1| GENE 6 5917 - 6774 804 285 aa, chain + ## HITS:1 COG:SPy0456 KEGG:ns NR:ns ## COG: SPy0456 COG1108 # Protein_GI_number: 15674575 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Streptococcus pyogenes M1 GAS # 1 265 10 263 284 68 26.0 2e-11 MIANLLLYPVLHVTIIGALGGLVGAFAYLDRRIFFAESVTHGTFPGAVLGVVIAAAYGLG HSGMSTSLFVGAFLGTIPLVALMRWLARIPGVSSQGAAGIVLTAGFASGYFLATWFKPLP LAVNSFLTGSVMTVSPADVAWAGAVLLVALVVVALGGRHLIAHCFDPANPAAAARAGRHE LIILGLTLASVTVAIPAVGTILSIALIAAPAAALAPLVRSSRAFLIGTPLLGALLGIAGL AIAVPARLSAGGTIALLCAACVLASRLPHWLAGSGRKRRARAGGE >gi|292822001|gb|ACYT02000006.1| GENE 7 6787 - 7698 1012 303 aa, chain + ## HITS:1 COG:Cgl0866 KEGG:ns NR:ns ## COG: Cgl0866 COG0313 # Protein_GI_number: 19552116 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Corynebacterium glutamicum # 35 303 12 280 282 217 50.0 2e-56 METATDTTNAPEPGSALTPQEGRAPEAYRQAAGTILLAATPIGDVRDASPRVVAALEGAD IVAAEDTRRALALASRLGIKLGGRLVALHDHNEAEKAAGIVEAARGGARVVFVSDAGMPT VSDPGFRLARAAIDAGVPLSVLPGPSAPLVALALSGLPSDRFAFEGFLPRKDGEVTRYLQ DLATDPHTLIFFESPRRAAATLTRMAEVFGADRAAALCRELTKDYEEVRRGVLGQLAEGA DDVLGEVTIVVAGYTRSARAEDHVGAVLALAAEGMRLKDAAAEVAAATGARKNDLYKAAL AAR >gi|292822001|gb|ACYT02000006.1| GENE 8 7717 - 8274 766 185 aa, chain - ## HITS:1 COG:MT2103 KEGG:ns NR:ns ## COG: MT2103 COG1335 # Protein_GI_number: 15841531 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Mycobacterium tuberculosis CDC1551 # 3 185 2 183 186 165 50.0 5e-41 MPRALIIVDVQPTFCEGGALPVTGGNAIAEAVAAYVDAHRDEYQLIVTTQDWHIDPGPHF SETPDFVDTWPPHGVAGTAEAELHPALAHVNADVTIKKGQYKAAYSGFEGTTEDGKTLEQ VLRDADIADVDVVGLAESHCVACTAVDAARADFKTRVLRELTAPVTEELGAQARQWMTSE HVEIV >gi|292822001|gb|ACYT02000006.1| GENE 9 8406 - 10247 2615 613 aa, chain + ## HITS:1 COG:Cgl0868 KEGG:ns NR:ns ## COG: Cgl0868 COG0143 # Protein_GI_number: 19552118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 4 596 5 600 610 776 63.0 0 MSRILSAVAWPYANGPRHIGHVAGFGVPSDVFSRYMRMAGHDVLMVSGTDEHGTPILVAA DGAGVSARELADQNNRLIVEDLVALGLSYDLFTRTTAGNHYRVVQDMFATVRDNGYMIEK VTRAAISPSTGRTLPDRYIEGTCPICGAEGARGDQCDNCGNQMDPTELINPHSRINGETP NFVESTHYFLDLPALADALSAWLDEREKSGTWRPNVIKFSQNFLEDIRPRAMTRDIDWGI PVPGWEDQPTKRLYVWFDAVIGYLSASIEWARRTGDPEAWRKWWNDPEALTYYFMGKDNI VFHSQIWPAELLGYNGQGAKGGAPGDLGVLNLPTEVVSSEFLTMEGKKFSSSHGIVIYVR DFLSRYQADALRYFISAAGPETSDSDFTWAEFVRRTNGELVAGWGNLVNRTASMIAKKFG EIPTPGELEDIDRALLDAVEAGFETVGNLIRHHRQKAALSEAMRLVGEANKYVTDTEPFK LKAPEQQQRLATVLWTLAQAVTDLNLMLSPFLPHAANDIDRVMGGAGEIAPMPYIEDVEE LDPQVLPADFEGRDGYPIITGDYTNVPTWERHPITVGTPIAKPTPVFVKLDESIVEEELA RYADAHPDDVTGA >gi|292822001|gb|ACYT02000006.1| GENE 10 10370 - 11836 1534 488 aa, chain + ## HITS:1 COG:CAC0425 KEGG:ns NR:ns ## COG: CAC0425 COG1621 # Protein_GI_number: 15893716 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Clostridium acetobutylicum # 4 463 5 464 490 273 34.0 8e-73 MAEDFLASALAAEASSRAPQDPDYPLFHVAPPVGRLNDPNGLIEIDGTYHAFFQYTPEHP RRLVYWGHATSRDLTHWEYHAPAILPDTHQDANGAYSGTAIEVGDHEELWYTGNYKDPET GEREATQCVVTTADMVHFDKQVPPIIGRQPEGYTAHFRDPQVWRDADGTYRMLLGVQREN LTGAALLYRSTDLRAWECEGEMTFPDAGGAFDTFGYMWECPNLVRLVDEDSGEAHDVLVF CPQGISPEREGFENVFPCVAIVGELVGTEFRSADGSFEELDRGTEFYAPQIMARSASSDP GAPTLLFGWAGNAGEDDQPSIETGGWVHCFTAPRALTLRGGRVIARPYLPGLPLVPATLE GAPGDEAGARVVELAGSRSWRLAFDASYEGALSVGIGSDSGLAITLEEGRLTVDLTGTRY PHGGRRVVTLEPGEASRVEILHDRSITEIYLGDGSRVFTTRSFLKGEGSGVTLVGAASVT LVGAARAD >gi|292822001|gb|ACYT02000006.1| GENE 11 12049 - 13498 2237 483 aa, chain + ## HITS:1 COG:Cgl2590_2 KEGG:ns NR:ns ## COG: Cgl2590_2 COG1263 # Protein_GI_number: 19553840 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Corynebacterium glutamicum # 99 466 4 367 406 347 57.0 4e-95 MDHAKVAGEVVEAVGGASNISAAAHCATRLRLVIADESKINQQALDDNEDLKGTFAAGGM FQIIVGPGDVDQVYAKMVANHGVREVSKDEAKEEAEKGGNLFSRFIKMIADIFVPILPAL VAGGLMMAINNVMTAEGLFSEQSLTQMYPGIADYAALINMVSSAAFASLPVLVGFSAAKR FGGNVYLGAAIGAAMVSSDLLNAWNTGAALAGEASVEYWHIFGMDVAKIGYQAQVIPTLA VTYVMCLIEKSLHKVLKGTADFLLTPLITMLVTGFLAFTIIGPVTRVAAEYLTWGINWTY STLGVFGGLLFGLVYSPIVVTGLHQSFPAIEIPLLPVNGGVGDFIFPVASMANVAQGAAA LAIFFKTRDAKLKGLAGAGGASAVFGITEPAIFGVNLRLRWPFFCAMAAAAIGSAGVALL NVRGQALGAAGFVGFVSIIPKSIPAYLALEVLVFVLSFGFTFAYAMTRGKADMEGRAPAA KAA Prediction of potential genes in microbial genomes Time: Tue May 17 05:47:13 2011 Seq name: gi|292821994|gb|ACYT02000007.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.15, whole genome shotgun sequence Length of sequence - 6043 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 534 689 ## COG2190 Phosphotransferase system IIA components + Term 562 - 614 23.2 2 2 Tu 1 . - CDS 1054 - 2079 1238 ## COG1609 Transcriptional regulators - Prom 2226 - 2285 3.2 3 3 Op 1 . + CDS 2254 - 2631 470 ## Sked_28580 phosphotransferase system HPr (HPr) family protein 4 3 Op 2 . + CDS 2636 - 4318 2202 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 4331 - 4404 33.4 - Term 4329 - 4381 22.9 5 4 Op 1 . - CDS 4408 - 5115 638 ## gi|293189072|ref|ZP_06607800.1| conserved hypothetical protein 6 4 Op 2 . - CDS 5131 - 5964 999 ## gi|293189073|ref|ZP_06607801.1| conserved hypothetical protein Predicted protein(s) >gi|292821994|gb|ACYT02000007.1| GENE 1 1 - 534 689 177 aa, chain + ## HITS:1 COG:BH0595_3 KEGG:ns NR:ns ## COG: BH0595_3 COG2190 # Protein_GI_number: 15613158 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Bacillus halodurans # 28 172 6 150 152 133 44.0 2e-31 PAAPAPAAAPVATPAPSFSDEALADLSVASPLAGTVVPLEQVKDESFAKGMLGPGIGIEP ADGLVVAPFDGTVTVAFPTGHAYGLKSASGVQVLIHVGMDTVKLDGKGFTPRVAKGDVVR RGDVLAEVDLDVIREAGYDTITPVVVTNKKKLGAVTPVASGEIQRGDALLEVAPKEA >gi|292821994|gb|ACYT02000007.1| GENE 2 1054 - 2079 1238 341 aa, chain - ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 8 310 5 302 321 243 41.0 3e-64 MSSREPTLADVAELAGVSLTTVSRVLNNRGYLSEKTKKNVADAIETLGYRPNSLARALHG KRTQTVGLIVPAVSLPFFGELAVEVENALADAGYRILICNSMGRADREREYLSLLVGNRV DGIISGAHNEGLSEYDTIRMPLVTIDRELSPSIPNVRCANKEAGAMATRALIEGGCRHPL LLTSRSGPRNLREAGYRAEIERAGLTPRVVTVPFDTPTPQRFAMVRDALDEARAAAPVDG VFATDDLAAAEVLEWARTRNLSVPTDLPIIGFDGTETMRRALPHLATIRQPIEEIARAAV SILLDQIEGKAPRSSSDEAGAPHAQTVEFSGTLIQGRSINA >gi|292821994|gb|ACYT02000007.1| GENE 3 2254 - 2631 470 125 aa, chain + ## HITS:1 COG:no KEGG:Sked_28580 NR:ns ## KEGG: Sked_28580 # Name: not_defined # Def: phosphotransferase system HPr (HPr) family protein # Organism: S.keddieii # Pathway: not_defined # 38 125 1 89 90 84 60.0 1e-15 MSLSVISGFAWVSKPVTMGRTGTCVSRWTYPHLKGTTMISRTVAIGSSVGLHARPASVLA EAVDDSGVEVTIAFDGEEADAASLLEIMTLGAKHGDVVTLSTEDDSAGAVLDSLVELLSR DLDQE >gi|292821994|gb|ACYT02000007.1| GENE 4 2636 - 4318 2202 560 aa, chain + ## HITS:1 COG:Cgl1887 KEGG:ns NR:ns ## COG: Cgl1887 COG1080 # Protein_GI_number: 19553137 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Corynebacterium glutamicum # 6 556 12 568 568 417 48.0 1e-116 MATHDVLHGIGVSAGTAAAPAAIVQPAPGVDTTEPGSVDAAADGARVREALAAVSARLSD RAANAPEETKAILKATAQLAGDRGLAKAVDKKLKKGLGVTQAVHDAVEDYAQMLRSLGGY MAERATDLYDVRDRAICELRGLPEPGVPAFDGPVVLVARDLAPAETATLNPETVLGIITE VGGPTSHTAILAAQLGIPAIVKAEGITTVEEGTMLALDGGVGEVIVAPTDDEVHLLKERS RRRALALAGSTGEGATYDGYRVKLLANIGTVDDAMKASKFDLEGSGLFRTEFLFLERSEA PTLEEQTDTYTKVLQSFGSRRVVVRTLDAGADKPLSFADLGAEENPALGVRGLRLCQVRE DLIDTQLQALAAAHKATDAELWVMAPMVSTAAEAKWFADKARGYGLPKVGIMIEVPAAAL RAEQLLSIVDFASIGTNDLTQYTMAADRLDGNLASLLDPWQPAVLEMIRHACNGGRATGK PIGVCGEAGGDPLLALVLTGLGVASLSMAPSKVNAVRAALRMHDLATCQQMAAYAVDAPS AKEGRDNVLKLVAPAMLDLL >gi|292821994|gb|ACYT02000007.1| GENE 5 4408 - 5115 638 235 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189072|ref|ZP_06607800.1| ## NR: gi|293189072|ref|ZP_06607800.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 235 1 235 235 342 100.0 1e-92 MTTSNDDQTTQLPEWDETTPLPTASTTTSGQDATAEMPASSPDLTSDPLAIFREASTTQM PADPFRADAGTESQAGTSGAQGSQAQAGAPAGSVGTGGRTAFDPASTGESTPRGDEAGAA PGTQARAGATPAPGTQTWSAQHTLGTTYPLPEAPSRGVRVGSFVWALLVCMVGAFLIAEV YITNLNLPVLGISAVALLGIILIFTALFSSRTKKNPKQGAGPQAAPNPADAIRRG >gi|292821994|gb|ACYT02000007.1| GENE 6 5131 - 5964 999 277 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189073|ref|ZP_06607801.1| ## NR: gi|293189073|ref|ZP_06607801.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 277 1 277 277 421 100.0 1e-116 MPTHRPRTVSSRANLAITGLLILVAAAVLAGIYMVDKGPAIPFIAAQTAEQTITRIISIG GGVCLIIVGLSLAIAALRDRSAGWLTALSIIGLIFAIPTAAIGTEGAQRVNQHINTTVGN IGKQTMLDWRVDKVSGGNPTGSTTLDLTGAPVGTSKTITVDWQAWSRLTIQMAEGQPVQI VCQSSIGTLSTNMEGNGWAASLNNCSGVTVTSPTWGKSSLGGITILITDEADIDTLTIVQ SPDSSGTWGSAPAPTSSVTPSATPTPSTTPTGSQSGN Prediction of potential genes in microbial genomes Time: Tue May 17 05:47:43 2011 Seq name: gi|292821988|gb|ACYT02000008.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.16, whole genome shotgun sequence Length of sequence - 7586 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 781 621 ## BAD_0372 hypothetical protein 2 2 Op 1 19/0.000 + CDS 1041 - 2231 1187 ## COG4585 Signal transduction histidine kinase 3 2 Op 2 . + CDS 2228 - 2878 709 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 4 3 Tu 1 . + CDS 3011 - 4501 1910 ## COG4868 Uncharacterized protein conserved in bacteria + Term 4538 - 4581 3.4 5 4 Tu 1 . + CDS 4639 - 7473 3038 ## COG0210 Superfamily I DNA and RNA helicases + Term 7518 - 7557 4.2 Predicted protein(s) >gi|292821988|gb|ACYT02000008.1| GENE 1 1 - 781 621 260 aa, chain - ## HITS:1 COG:no KEGG:BAD_0372 NR:ns ## KEGG: BAD_0372 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 6 237 45 264 667 88 33.0 2e-16 MSWPNGTTDPGAQYQQRPPRNSFFDAVRGSGWYRAQNRTIAGVCSGIAARQGWDLSLVRV LMVVATLCMPVVAIAYGLAWLLLPEAADGRIHAEEMLEGRFDVAVIGGVFMVLAGLSSAL SSIGIVNGVGLGWFQLLALAAAMTAIVVVIVSIARSASQGGPHRHGAVPPYGTPQHGAPQ YGNPQYGTRQQQASAAGASVPFGHSAPGAKDTGSTMPQQQNAQAPEGFPAYGVPAGSAAS AGTPRPDGATSAAQGTNAGP >gi|292821988|gb|ACYT02000008.1| GENE 2 1041 - 2231 1187 396 aa, chain + ## HITS:1 COG:Cgl0594 KEGG:ns NR:ns ## COG: Cgl0594 COG4585 # Protein_GI_number: 19551844 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 112 380 78 350 352 107 35.0 4e-23 MPAPWMGGVCSGLAVHLGVSVALVRIVVACLSVVGIGIGVYLWLWVSIPEDNPERTDNGT LSPGLVRLREERASQVSRNRMIVVGVALIVAAIAGTILNATNTLDWRDMGSIITIGSGIS LVWSQSRNVSSWRSLRFVGAVFGGIVLLSLGVVMVASRDNPPIILLRGGLIGAALVAGVL FALVPMWVRTTKDLSQAQAQRVRESERADIAAHLHDSVLQALTLIRASAEDPARVRAIAL TEERELRAWLYTGHVQAADSLDAAVTEAVVGVESRHGVPISVVVVGDMRPGPGELALVAA LAEACQNAVRHGAPPVSVYVEVRPQAVEAFIKDSGEGFDPASIAADRHGVRDSIVGRMRR TGGNATIRRLARGTEVALSVPRSDILEETAPNGRTQ >gi|292821988|gb|ACYT02000008.1| GENE 3 2228 - 2878 709 216 aa, chain + ## HITS:1 COG:Cgl0595 KEGG:ns NR:ns ## COG: Cgl0595 COG2197 # Protein_GI_number: 19551845 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 3 215 2 229 230 195 51.0 5e-50 MTIRILVIDDHPMVRAGVRAELENSGADLEVVGDASDVEGAIAACRALTPDVALLDVHLP GGNGGGGAEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPDLVEAIG RVAAGDAAFSPRLAGFVLDAFGTGEVSITDTELDLLSAREQEVMRLIARGYTYKEVAHDL FISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV >gi|292821988|gb|ACYT02000008.1| GENE 4 3011 - 4501 1910 496 aa, chain + ## HITS:1 COG:Cgl2942 KEGG:ns NR:ns ## COG: Cgl2942 COG4868 # Protein_GI_number: 19554192 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 4 496 3 495 495 683 66.0 0 MHRIGFDSDQYVEMQSRHIAQRRSEFGGKLYLEFGGKLIDDMHASRVLPGFTPDNKVRML RELADEVEIIVAVNAKDFARRKVRADMGTTYDDEVLRQIDEFRERGLYVGSVVITQWTDD NKAAAEVKERFEKLGIRVYRHFPIPGYPSDVERIVSDEGYGANEYVETSRNLVVVTAPGP GSGKMATCLSQLYHDHKRGIESGYAKWETFPIWNIPLDHPVNIAYEAATADLDDVNMIDP FHLEAYGIKTVNYNRDVEIFPVLNRLFEKILGSSPYKSPTDMGVNMAGHCIVDDEACKEA SRQEIIRRYYKALVTEKKEMSEPVQSARISLLMSRVGVGRMDRPVVRPALELAEATGEPA AAIELPDGQIVTGKTSALLGCSSAMLLNALKKLAGLPDEVQLLAPQSIEPIQRLKTRDLG SRNPRLHTDEVLIALAVSANGDDNARRALDKLSSLRGCDVHESVILGPVDEGIFRSLGIQ VTTEPVYATKSLYRKK >gi|292821988|gb|ACYT02000008.1| GENE 5 4639 - 7473 3038 944 aa, chain + ## HITS:1 COG:MT0976 KEGG:ns NR:ns ## COG: MT0976 COG0210 # Protein_GI_number: 15840373 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 78 528 11 467 771 535 64.0 1e-151 MSDSTSLPDLGFLIGPDRGSQDDYVPPEVPAFDVEDALGSDAWPEIAVPGGASGAPSAWE PSASSGAFSSRWEPPARPGVDPESLTRGLNDRQREAVTHAGSPLLILAGAGSGKTRVLTH RIAYLLATGRARAGEILAITFTNKAAAEMRERAGALVGDDARRMWVSTFHSACVRLLRYK HEAAGLSSSFTIYDAQDSQRLIQMVLKAMDVDIKRFTPKMVAARISDAKNELIGPARYAE TAGKDPVSRIVADAYVEYDKRMRASNALDFDDLIMRTVDLLHENPLIAEHYHRRFRHILV DEYQDTNHAQYVLVRALVGDGKDGVEPAELTVVGDSDQSIYAFRGATIRNIEEFERDFTG ARTILLEQNYRSTQNILSAANAVIARNTGRRAKNLWTASGDGALITLDAADSEHDEARFV VGEIDRLADSGVEWGDIAVFYRTNAQSRALEELLVRQGIPYRVVGGTRFYERREIKDALA YLQVISNPDDTVAARRVLNVPKRGIGAKAEEAIAAHAAHYGISFGAALRHLWLRAGCPAG EGEGIDVDALARSTSPDEASADSSAPVSSDGAAGENPGARDGADESATTVESAAAAPASS PVESAPETAPEVLGITPRAAKSAAAFWGLIETLRAAEARGASQADILEEVLDRTGYLAEL RRSEDPQDASRVENLAELHSVAGAFAAEAPGGTLADFLERVALVADSDQVPAEGERGGQV TLMTVHTAKGLEFPVVFVTGMEDGTFPHQRSLGDESELEEERRLAYVAITRAREHLYLTR AAVRSAWGTPQEMPPSRFLDDIPAELLDVRRAATSGERMRAPYGGSYGSGSYGSGSYGRS RRSEGRDPWGDTDTGAFGSGRGGASAQPAGVRKVTRMGVAPAAKPAEDKPVLSLKVGDRI KHATLGAGTVTGIEGEGPRTVARIRFGLGEKRLLVRMAPMKKIS Prediction of potential genes in microbial genomes Time: Tue May 17 05:48:03 2011 Seq name: gi|292821925|gb|ACYT02000009.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.17, whole genome shotgun sequence Length of sequence - 53997 bp Number of predicted genes - 63, with homology - 57 Number of transcription units - 38, operones - 14 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 887 - 1120 79 ## 2 1 Op 2 39/0.000 + CDS 1149 - 2336 1598 ## COG0045 Succinyl-CoA synthetase, beta subunit 3 1 Op 3 . + CDS 2363 - 3283 1376 ## COG0074 Succinyl-CoA synthetase, alpha subunit 4 2 Op 1 . + CDS 3465 - 4772 979 ## Arch_1294 hypothetical protein 5 2 Op 2 . + CDS 4735 - 4875 69 ## 6 3 Tu 1 . + CDS 4987 - 6828 2243 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 7 4 Tu 1 . - CDS 6729 - 6926 94 ## + Prom 6877 - 6936 1.7 8 5 Op 1 . + CDS 6977 - 7561 891 ## COG1268 Uncharacterized conserved protein 9 5 Op 2 . + CDS 7713 - 9269 1965 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 9305 - 9352 11.3 10 6 Tu 1 . + CDS 9413 - 10141 620 ## BCAH820_0842 hypothetical protein + Term 10147 - 10177 3.4 11 7 Tu 1 . - CDS 10175 - 10414 392 ## gi|293189090|ref|ZP_06607816.1| toxin-antitoxin system protein + Prom 10365 - 10424 3.6 12 8 Tu 1 . + CDS 10458 - 10655 223 ## gi|293189091|ref|ZP_06607817.1| prevent-host-death family protein 13 9 Tu 1 . - CDS 10712 - 10927 79 ## 14 10 Tu 1 . + CDS 10814 - 11647 869 ## COG4296 Uncharacterized protein conserved in bacteria + Term 11763 - 11809 0.4 15 11 Tu 1 . - CDS 11644 - 12189 573 ## gi|293189093|ref|ZP_06607819.1| conserved hypothetical protein - Term 12305 - 12355 1.5 16 12 Tu 1 . - CDS 12357 - 13205 1276 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 17 13 Op 1 . + CDS 13364 - 14056 774 ## Elen_2869 transcriptional regulator, TetR family 18 13 Op 2 . + CDS 14053 - 14508 651 ## Elen_1414 hypothetical protein + Term 14604 - 14645 0.0 19 14 Tu 1 . - CDS 14687 - 14869 71 ## - Prom 15014 - 15073 2.9 20 15 Op 1 . + CDS 14792 - 15115 291 ## Ccur_10240 hypothetical protein 21 15 Op 2 . + CDS 15117 - 15776 647 ## COG2323 Predicted membrane protein + Term 15959 - 15993 0.1 - Term 15657 - 15692 0.2 22 16 Op 1 . - CDS 15814 - 16080 288 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system 23 16 Op 2 . - CDS 16081 - 16296 265 ## gi|154509635|ref|ZP_02045277.1| hypothetical protein ACTODO_02168 - Prom 16318 - 16377 2.2 24 17 Tu 1 . + CDS 16446 - 17402 608 ## COG3177 Uncharacterized conserved protein + Term 17411 - 17458 1.4 + Prom 17838 - 17897 2.3 25 18 Tu 1 . + CDS 17953 - 18513 70 ## gi|293189103|ref|ZP_06607829.1| conserved hypothetical protein 26 19 Tu 1 . - CDS 18715 - 18876 136 ## gi|293189104|ref|ZP_06607830.1| hypothetical protein HMPREF0970_00140 27 20 Tu 1 . + CDS 19049 - 20203 701 ## mru_1964 hypothetical protein 28 21 Op 1 . - CDS 20200 - 20916 746 ## Ccur_10210 transcriptional regulator 29 21 Op 2 45/0.000 - CDS 20939 - 21700 971 ## COG0842 ABC-type multidrug transport system, permease component 30 21 Op 3 . - CDS 21687 - 22610 371 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 22651 - 22710 2.8 + Prom 22591 - 22650 3.0 31 22 Tu 1 . + CDS 22805 - 25018 1993 ## COG0276 Protoheme ferro-lyase (ferrochelatase) + Term 25038 - 25097 22.2 32 23 Tu 1 . - CDS 25111 - 26091 1045 ## Ccel_3463 carbohydrate-binding family 9 - Prom 26274 - 26333 3.0 33 24 Op 1 . + CDS 26134 - 26391 74 ## 34 24 Op 2 . + CDS 26464 - 28842 2071 ## BAD_0880 hypothetical protein 35 24 Op 3 . + CDS 28900 - 29499 647 ## PROTEIN SUPPORTED gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 36 24 Op 4 . + CDS 29538 - 29978 169 ## COG1186 Protein chain release factor B 37 25 Tu 1 . - CDS 30000 - 30833 746 ## COG0500 SAM-dependent methyltransferases - Prom 30883 - 30942 2.3 38 26 Tu 1 . + CDS 30942 - 32021 1247 ## COG2008 Threonine aldolase + Term 32174 - 32220 5.6 39 27 Op 1 . - CDS 32084 - 32449 441 ## gi|293189117|ref|ZP_06607843.1| conserved hypothetical protein 40 27 Op 2 . - CDS 32439 - 32876 192 ## gi|293189118|ref|ZP_06607844.1| hypothetical protein HMPREF0970_00154 41 28 Op 1 . - CDS 32987 - 33574 279 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Term 33586 - 33634 0.0 42 28 Op 2 . - CDS 33639 - 34292 466 ## gi|293189120|ref|ZP_06607846.1| conserved hypothetical protein 43 28 Op 3 . - CDS 34306 - 34854 456 ## gi|293189121|ref|ZP_06607847.1| benzoate membrane transport protein BenE 44 28 Op 4 . - CDS 34851 - 35267 199 ## Sked_27150 hypothetical protein 45 28 Op 5 . - CDS 35270 - 35446 229 ## gi|154509616|ref|ZP_02045258.1| hypothetical protein ACTODO_02149 46 28 Op 6 . - CDS 35480 - 35956 765 ## COG1302 Uncharacterized protein conserved in bacteria 47 29 Tu 1 . - CDS 36207 - 36464 415 ## RMDY18_05770 predicted membrane protein 48 30 Tu 1 . + CDS 36746 - 37468 1076 ## COG0778 Nitroreductase + Term 37563 - 37609 1.2 49 31 Op 1 . - CDS 37471 - 37728 277 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system 50 31 Op 2 . - CDS 37731 - 37994 348 ## gi|293189129|ref|ZP_06607855.1| toxin-antitoxin system, antitoxin component, PHD family 51 32 Tu 1 . + CDS 38148 - 39470 1900 ## COG3949 Uncharacterized membrane protein - Term 39429 - 39465 1.3 52 33 Op 1 . - CDS 39472 - 40077 331 ## COG0350 Methylated DNA-protein cysteine methyltransferase 53 33 Op 2 . - CDS 40046 - 40639 574 ## RMDY18_06500 permease of the major facilitator superfamily 54 34 Tu 1 . + CDS 40836 - 42824 1993 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 55 35 Tu 1 . - CDS 42861 - 43433 788 ## GALLO_1344 putative acetyltransferase (GNAT) family - Prom 43642 - 43701 2.0 56 36 Tu 1 . + CDS 43652 - 47050 5080 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 57 37 Op 1 . + CDS 47162 - 47746 881 ## COG0693 Putative intracellular protease/amidase 58 37 Op 2 8/0.000 + CDS 47786 - 48697 1011 ## COG0084 Mg-dependent DNase 59 37 Op 3 . + CDS 48916 - 50076 1471 ## COG3583 Uncharacterized protein conserved in bacteria 60 37 Op 4 . + CDS 50173 - 51612 1877 ## COG3583 Uncharacterized protein conserved in bacteria + Term 51629 - 51680 21.1 + Prom 51864 - 51923 3.5 61 38 Op 1 . + CDS 51967 - 52620 646 ## Apre_1054 hypothetical protein 62 38 Op 2 . + CDS 52685 - 53671 1436 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 63 38 Op 3 . + CDS 53711 - 53996 382 ## Arch_1587 4-diphosphocytidyl-2C-methyl-D-erythritolkinase Predicted protein(s) >gi|292821925|gb|ACYT02000009.1| GENE 1 887 - 1120 79 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLAEIEGPVARVVQLRSGGKRCAAGATTPCASHRPLQLTPQRKALTKGSGSPVKVVTSLD NGRKWRVDAGRTLELLR >gi|292821925|gb|ACYT02000009.1| GENE 2 1149 - 2336 1598 395 aa, chain + ## HITS:1 COG:Cgl2512 KEGG:ns NR:ns ## COG: Cgl2512 COG0045 # Protein_GI_number: 19553762 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Corynebacterium glutamicum # 1 378 5 379 402 442 65.0 1e-124 MDLYEYQARQMFKEHGVPVLDYRLASTPEEAREGARELLADGASLLVVKAQVKTGGRGKA GGVKLAHTADEAYEKAEAILGLDIKGHIVKKVMIASGADIAAEYYFSILLDRSNRRHLAM CSREGGMDIETLAKERPEALARVPLDPAVGINAEVARRIAKEAGFDEATAEAIAPVLETL WTVYRDEDATLVEVNPLVSSPDGSVWAVDGKVTLDDNARFRHPGHAELVDVAAQDPREAA AKAAGLNYVRLEGQVGIIGNGAGLVMSTLDVVAMAGEEFGGMKPANFLDIGGGASAEVMA KGLDIILGDEQVRSVFVNVFGGITACDQVARGIIGALETLGDAASKPLVVRLDGNKVEEG RAILAEAAHPLVHMEETMDGAARRAAELAAQASSK >gi|292821925|gb|ACYT02000009.1| GENE 3 2363 - 3283 1376 306 aa, chain + ## HITS:1 COG:MT0979 KEGG:ns NR:ns ## COG: MT0979 COG0074 # Protein_GI_number: 15840376 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 304 4 300 303 357 68.0 1e-98 MTIFVNSDTRVIVQGMTGAEGRKHTQRMLSAGTAIVGGTNPRKAGTTVTFDVQGYGPGVD KVTDGQVEVPVFGTVAEAREATGANASVIFVPPAFAKGAALEAIDAGIETIVLITEGIPV QDSTIVVERALAAGVRLIGPNCPGIISPGQANLGITPADITGPGRLGLVSKSGTLTYQLM YELRDFGFTTCLGIGGDPVVGTTHIDALAAFEADPDTDLVIMIGEIGGDAEERAAAWIQE NMTKPVVAYIAGFTAPEGKTMGHAGAIVSGSSGTAAAKAEALEAVGVRVGRTPSQTAQIA REILSR >gi|292821925|gb|ACYT02000009.1| GENE 4 3465 - 4772 979 435 aa, chain + ## HITS:1 COG:no KEGG:Arch_1294 NR:ns ## KEGG: Arch_1294 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 3 370 16 383 387 79 24.0 2e-13 MLAGVEAAFAGWGLITVFTMIAYLTLRSNSWMNGTTPRDALGLGGDLWAAVIGGTSVVGD VHYRAIPTLMGALLVVLVRILLRTTAGYPRSAALFAVPGFLLTSWLLAGASGIHSHWWTG TIGGVLIPLIGSVWFVASGYSRDHEAPSMQHWISGGLKLGGLSVVVLAAASFVASVIALV AGWSRMAGILELLGASSAADTSFIVGGQALFAPTIMAWVASWWSGAGFLTATDSLHSPTV VGSGPIPPIPLLGAVPQTAPGMWVLLAPIALGIGLGVVAARSFRREHLLHQTAQGFLASL ITASVTALWMWSATMSMGSVRLASMGPRVGWATLALVLEIALPALIIALATHPTTRALLG EGAGRVRNEGEALRRRAAERASRVGGTASTTDEAWAEASDPAEVGDTEASADEAGAEDLE AVADGGRSGRDARGD >gi|292821925|gb|ACYT02000009.1| GENE 5 4735 - 4875 69 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGGEVAETHEETSETAADDAADSEAVEAEGDAEDPETKATRREGLN >gi|292821925|gb|ACYT02000009.1| GENE 6 4987 - 6828 2243 613 aa, chain + ## HITS:1 COG:Cgl0838 KEGG:ns NR:ns ## COG: Cgl0838 COG0138 # Protein_GI_number: 19552088 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Corynebacterium glutamicum # 12 613 4 520 520 610 58.0 1e-174 MSVSLDNLEPIDVRPIKRALISVYDKTGLEDLARALGEAGVEIVSTGSTAARIAAAGVAV TPVDDVTGFPEVLEGRVKTLHPFIHSGILADQRKAAHREQIAQLGIQAFDLVVCNLYPFQ DTVASGASFDECVEQIDIGGPSMVRAAAKNHPSVAVVTSPEHYADVAEAVAGEGFTLEQR RVLAAEAFAHTATYDLAIAGWLADELDLEDVRETLDDAAETHLDASDAAFLESLGYQTEE DYVVEAPEEEGQASGMPVFVADAFERVESLRYGENPHQGAAVYREIDESFEDEEADDEAW APGIANARQLHGKAMSYNNYTDGDAALRAAYDHERPCVAIIKHANPCGIAVADDVAEAHR LAHACDPVSAFGGVIAVNRPVSVELARQIVPIFTEVVLAPDYEEGALEVLSAKKNLRVLQ VEPPARGSYEFKQISGGLLVQERDDIDAPGDSPENWTLAAGAPADEATLADLEFAWRTVR AVRSNAILLVKDGASVGVGMGQVNRVDSCKLAVERANTLGSRSTGDAAASNVDSAGGARA SEVVGDAPEQRSIGAVAASDAFFPFADGLQVLIDAGVKAVVQPGGSVRDQESIDAANAAG ITMYLTGTRHFAH >gi|292821925|gb|ACYT02000009.1| GENE 7 6729 - 6926 94 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLNTTPLSSTRAQISGGERHTGARPLEPMNGNDQCAKWRVPVRYIVIPAAFAASIDSWSR TEPPG >gi|292821925|gb|ACYT02000009.1| GENE 8 6977 - 7561 891 194 aa, chain + ## HITS:1 COG:mlr7429 KEGG:ns NR:ns ## COG: mlr7429 COG1268 # Protein_GI_number: 13476177 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 24 189 79 244 254 71 30.0 1e-12 MTTLTASPVAARENRVLADRLGGTIAREIALVAAGTIAMIVLARISIPLPFTPVPVSLGT LGALSVGTTLGARRGLVSVAAYVLLGIAGVPVFTGTNVGWAFASFGYILGYLLVAAIAGA AAQRGADRRIVTMAPTAVVSLFSVYILGLAWMIPFAHMTLEQGLMKGFVPFIIGDLVKAA VATGTFPVLRSIFR >gi|292821925|gb|ACYT02000009.1| GENE 9 7713 - 9269 1965 518 aa, chain + ## HITS:1 COG:Cgl0591_2 KEGG:ns NR:ns ## COG: Cgl0591_2 COG0519 # Protein_GI_number: 19551841 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Corynebacterium glutamicum # 194 518 2 326 326 484 76.0 1e-136 MHPVLVVDFGAQYAQLIARRVREANVYSEIVPHTMSVADMLAKEPAAIILSGGPSSVYEE GAPSVDPAIFEAGVPVLGICYGFQTMAHALGGTVGRTGTREYGHTEATVAGDSCLFGGTP DDQIVWMSHGDAVQGAPEGFTVTASTTETPVAAFESRERRLYGLQWHPEVGHSQFGQDAL KNFLYEGAGLEPTWTAGSIVDEQVAKIREQVGDAQVICALSGGVDSSVAAALVHRAVGDQ LTCFFIDHGLLRAGEREQVENDYARGMGIRVITCDESERFLSALAGVTEPEAKRKIIGRE FIRSFEAAQKQVIEEVGAAGGEVKFLVQGTLYPDVVESGGGEGAANIKSHHNVGGLPEDM TFELVEPLRTLFKDEVRAVGRELGLPDYLVNRQPFPGPGLGIRIIGEVTRERLDILRAAD LIAREELTAAGLDQEIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMTADWTR LPYDVLARISTRITNSVPEVNRVVLDVTSKPPATIEWE >gi|292821925|gb|ACYT02000009.1| GENE 10 9413 - 10141 620 242 aa, chain + ## HITS:1 COG:no KEGG:BCAH820_0842 NR:ns ## KEGG: BCAH820_0842 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH820 # Pathway: not_defined # 52 241 19 207 220 189 52.0 6e-47 MLVQFSAMGGGAFCRTVRELWKGLAVEKQSSVDEQEESVLAKKRQEALDKLYSSALNGIP MVSGSVDDLVEDYLSKYETVEEAAAALVRAQVVKCGTSGFITGFGGLITLPVTISANLSS VFYVQMRMIAAIAAMGGYDVRSDQVKTLVFVCLTGTSIADLLKEGCVKAGEQVTRAVIKK IPGAVLTKINQRIGFRFITKFGEKGVVNLGKCVPLVRAVIGGGMDVASTRVIGKRAIAEF IA >gi|292821925|gb|ACYT02000009.1| GENE 11 10175 - 10414 392 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189090|ref|ZP_06607816.1| ## NR: gi|293189090|ref|ZP_06607816.1| toxin-antitoxin system protein [Actinomyces odontolyticus F0309] # 1 79 1 79 79 154 100.0 2e-36 MARIWPQIKASAAAVYARWGISLSDAINIFLAKSIEIGGLPFDMHPETPTFDGLERYAYR PTLDANGVARLPGDWDDGE >gi|292821925|gb|ACYT02000009.1| GENE 12 10458 - 10655 223 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189091|ref|ZP_06607817.1| ## NR: gi|293189091|ref|ZP_06607817.1| prevent-host-death family protein [Actinomyces odontolyticus F0309] # 1 65 6 70 70 120 100.0 3e-26 MGLAEAKNNFSRVTAEVNRTGKPVTILKNNRPWVVIQPAQQSEGAVDVAVDFMDAYADVF EELAK >gi|292821925|gb|ACYT02000009.1| GENE 13 10712 - 10927 79 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRGLPEAVPFRRPTASGDQNENLPRLFLEGMLPFLLCHIVLHAHIFEQIHVSSSLIQGCR FATTNPTLREA >gi|292821925|gb|ACYT02000009.1| GENE 14 10814 - 11647 869 277 aa, chain + ## HITS:1 COG:all0924 KEGG:ns NR:ns ## COG: all0924 COG4296 # Protein_GI_number: 17228419 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 134 262 6 130 145 70 28.0 3e-12 MTQEEWEHTFEEEAREIFVLVAGSSGAAKRNGFWEAAHSYLAYVYYETGALCADDGRLVY PVNDKDNAAGNVLGRFRDEEIYRVAARKKIPQELPEGMSASSQNEFLIVEVLEEDAPCPA LKEVLADYRRPVVVTDEVLGELTLDKDYDTFEGVISWRDEDIDISLEVDSSSEDTWTAAV AAMKQMVADQDRWDRDMQAFAARELTELACEWRESADEDVPEITEESFAQRIELTSIAMD PDGSFSAYFDDDDMFFGHCVVVYGTLEDGVSSAVMAG >gi|292821925|gb|ACYT02000009.1| GENE 15 11644 - 12189 573 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189093|ref|ZP_06607819.1| ## NR: gi|293189093|ref|ZP_06607819.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 181 1 181 181 311 100.0 9e-84 MARFARIAAPLLVVTVVYAGCFDQALPKQPLFPIGAWIGALLITIYFSALTVLHSQDKVA PRVLAFWGLVVKLALLPIFLITLILTIGVPLDSSNGNIGGLLLVFFILPLDAGVYCLMLV SSFHGFAVTKRLLAEQTIPSATVKRLRKIHAVPIADFAAAIWLYALLRRLDRTAAACSQD T >gi|292821925|gb|ACYT02000009.1| GENE 16 12357 - 13205 1276 282 aa, chain - ## HITS:1 COG:BMEII1060 KEGG:ns NR:ns ## COG: BMEII1060 COG0656 # Protein_GI_number: 17989405 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Brucella melitensis # 4 270 25 294 294 217 41.0 2e-56 MDHITLNNGITIPQVGLGTYLLEPDDAQSAVTYALDNDYTLIDTANVYVNERAVGRGMRG SSKGREEIFLETKLWPSFFERASAVDETLERLGTDYIDLMILHQPAGDTVAGYRILEKAH KEGKIRAIGLSNFDVAQTQRILDECEVVPTINQVECHPYFPQTELKALLAEHNIALQAWY PLGGRGNDSIMTEPLVQGLAEKYGKSPAQVLLRWHIQQGHIVIPGSKTPSHIAQNINLFD FALTDEDMAQIDSLDKGKPFFEHNDEVLSGFLAYVPDVEGQK >gi|292821925|gb|ACYT02000009.1| GENE 17 13364 - 14056 774 230 aa, chain + ## HITS:1 COG:no KEGG:Elen_2869 NR:ns ## KEGG: Elen_2869 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: E.lenta # Pathway: not_defined # 37 220 4 188 192 118 36.0 2e-25 MTRSLVAAVVACPDNPILNTVHYGLLQVAKQQEVVPKQVIDPGKLVSQAYAIASRDGISA LSVRKVATACGIAIGSVYGYFPTKADLTATVLTRFFEENLSDELCAVRPGERFTSYVRRF REALCAAHADMSVDWFAEMRRLPSGEQEALEAVRAPMLAHIERGLARVLDADEAVDRSRL VGPMSAEALCRYVLRAVFASLMEGDECETLFALLDASLYDDTTEEKDAKK >gi|292821925|gb|ACYT02000009.1| GENE 18 14053 - 14508 651 151 aa, chain + ## HITS:1 COG:no KEGG:Elen_1414 NR:ns ## KEGG: Elen_1414 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: not_defined # 1 138 1 136 158 122 48.0 3e-27 MSRFRIKKQPLIAVAGIVWLLAGLNVAVLGVRAAIDVRGLTAIVLVALVGGAVAIFCAFH PMFSKLVKKNTQRIADLEGERHHVVRFFDRKSYLMMAIMMSLGIGLRAAGLVPDWFIAFF YTGLGLALSLAGASYIARGVRGRAWAFHGTN >gi|292821925|gb|ACYT02000009.1| GENE 19 14687 - 14869 71 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLGLDSQQDERKHKKSNAHVTPAGFHPVMQIQGAKSESHNDKTMIAARRRVASKLWCDTM >gi|292821925|gb|ACYT02000009.1| GENE 20 14792 - 15115 291 107 aa, chain + ## HITS:1 COG:no KEGG:Ccur_10240 NR:ns ## KEGG: Ccur_10240 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 1 106 43 148 149 144 67.0 1e-33 MKTRWRDVGIGLLVFSLVLLGIQTEQYLKVSDQQSQAQLLVGFMEGIAIDHGVQVRDVMV NKTSLQDGMIVRFNEEDYTVHLNNDNNSFTLERTHIIDHGVYVNGEH >gi|292821925|gb|ACYT02000009.1| GENE 21 15117 - 15776 647 219 aa, chain + ## HITS:1 COG:L163025 KEGG:ns NR:ns ## COG: L163025 COG2323 # Protein_GI_number: 15674091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Lactococcus lactis # 1 213 1 211 211 161 39.0 7e-40 MDFYTLTAIKFALGILTMLLQINILGKRDFSLNTPLNQVQNYVLGGIIGGVIYNSSISVL QFLVIILIWSLVVIATKILIDTSKTFKKLAACQPELIVRDGEVDIARCAKVGMTAEGLSR SLREQKIASVGDVAAAIMETNGSLTIRVRGDGSKRSLLPLVTDGQLVPDGLLLAGKDKAW VKEELKKLGYSSVKQVFLGELVSGHLEVIPYPKTTSVKS >gi|292821925|gb|ACYT02000009.1| GENE 22 15814 - 16080 288 88 aa, chain - ## HITS:1 COG:FN0497 KEGG:ns NR:ns ## COG: FN0497 COG2026 # Protein_GI_number: 19703832 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Fusobacterium nucleatum # 3 88 4 89 90 97 52.0 5e-21 MSYHVEYSDTALKQLKKMDRFDARLITSWIGKNLEGCSDPRIHGKGLTANRSGEWRYRIG NYRALCIIEDDRLIIEVFSVGHRRHVYQ >gi|292821925|gb|ACYT02000009.1| GENE 23 16081 - 16296 265 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509635|ref|ZP_02045277.1| ## NR: gi|154509635|ref|ZP_02045277.1| hypothetical protein ACTODO_02168 [Actinomyces odontolyticus ATCC 17982] # 1 71 1 71 71 114 97.0 2e-24 MPTMTMRLDETDAEVVRKYAEFEGKTISDFVRDAVFEKIEDQQDLATLREAVAADTGVRY THEQVLAELGL >gi|292821925|gb|ACYT02000009.1| GENE 24 16446 - 17402 608 318 aa, chain + ## HITS:1 COG:FN0971 KEGG:ns NR:ns ## COG: FN0971 COG3177 # Protein_GI_number: 19704306 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 5 314 7 327 330 260 39.0 2e-69 MAYEPSFKRSDVIDALCIEIAELVGTLSPQAPLSTSPTLRRELRIQTIYSSLVIEGNKLD KHAVSAIIDGKPVLGDRRDILEVENARAAYDLIPSLDPYSAEELLRVHRVMMDGLVPDAG RFRSGNVGVFNGDTLIHAGTPAAYVPEVMGGLFEWLRTTRMHPLLASCVFHFEFEFCHPF SDGNGRTGRLWQTLLLSRWRPVLAWLPVESAIRRRQADYYEALARSGATGSCESFVEFML EAIREAILPYARPESAADAERARVLAFFRDNTRSTVAQLAQHLGCSKRSAERIVAQLKEE GVLERQGSPRSGEWKVEN >gi|292821925|gb|ACYT02000009.1| GENE 25 17953 - 18513 70 186 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189103|ref|ZP_06607829.1| ## NR: gi|293189103|ref|ZP_06607829.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 186 1 186 186 339 100.0 4e-92 MGCLFSVLFLVFVVVMYLVYLCCGIWRRRVANSLREDIQQERVPLSSMADLIQPESKMVF LDGTVRLGYEPFLMRQSRFVSSLMGVVSSRVDGRCLQRGEIRQVRAKGCDDQIKSIVQAY LDCWPGDVESSVFFVFSENGVTSVKVVSMLRSFGYLAYDLGASSDNERLLNAYFTELNIL RACGLI >gi|292821925|gb|ACYT02000009.1| GENE 26 18715 - 18876 136 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189104|ref|ZP_06607830.1| ## NR: gi|293189104|ref|ZP_06607830.1| hypothetical protein HMPREF0970_00140 [Actinomyces odontolyticus F0309] # 1 53 1 53 53 93 100.0 5e-18 MNTDKVRVVEHFGTDHTQACELRGIPTERLHAMPFVMNIIKVTPRTSTTYTAR >gi|292821925|gb|ACYT02000009.1| GENE 27 19049 - 20203 701 384 aa, chain + ## HITS:1 COG:no KEGG:mru_1964 NR:ns ## KEGG: mru_1964 # Name: not_defined # Def: hypothetical protein # Organism: M.ruminantium # Pathway: not_defined # 1 381 1 393 394 212 31.0 2e-53 MKVFVVPMVARSRMGGPWSRAQRVARAFRDGGHEVTLAWGDDGNCTDPIAPTLEIPVPSP LGLPEAIARHTFPVASRLGLMGRKPVHSFEEVLWLTGALDERYTRAAVDALRTHMRTARP DVVYSEFSLAAGIAARAEGIPCVGSASQPTTASYASNPRKSAGIRRLLREMGMPAPASSL TILEGMRRRFIPSCPTLEPWAGEWAVYCGFLDEPPALTATPRDCALVYLGAGSVPASVAV RAGRELARALGCDVYVAGVPEATQVTGGHTVSCAPRFDFADLLPRARVFVHHGGQNSMMD ALSYEVPQVIVPGRVFERQFNAEAVENARCGLTVRASQPALIARAARRLVDEPALTLGIR GARAELCSLGGGTRIVREVEKLIS >gi|292821925|gb|ACYT02000009.1| GENE 28 20200 - 20916 746 238 aa, chain - ## HITS:1 COG:no KEGG:Ccur_10210 NR:ns ## KEGG: Ccur_10210 # Name: not_defined # Def: transcriptional regulator # Organism: C.curtum # Pathway: not_defined # 2 237 10 271 272 219 48.0 5e-56 MPQSKQRALSRDIILSTALDLVDEEGLSALSLRSLGKRLGVSQAAFYRHFPDKAALLEGI SEQVWRLTFKAFLARVDAGTVNAESTPTPEASAPTDGTPTSPLLTYMRAYAHCLASTLRS HPGAVMLLLTHPMSTPEQLSLLARVFVTLARRGFTPNADMLGLVNAVSIYTTAFVAAEVV PPVGGSPEQPADLSAASDALDPEDAQALRPLIEDLLDGRYDFNAQFERGLEAILRGWA >gi|292821925|gb|ACYT02000009.1| GENE 29 20939 - 21700 971 253 aa, chain - ## HITS:1 COG:BMEII0801 KEGG:ns NR:ns ## COG: BMEII0801 COG0842 # Protein_GI_number: 17989146 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Brucella melitensis # 84 249 210 375 379 69 33.0 7e-12 MSQLKQLGAMTRLNIRLQLTDPAPTLILTMIPLVLIPFMMPAFKSMLLADGYAGVTGAEQ AVPSIAILFSFLAVQNIISSFFNERSWGTWERLEASPTSRATILTGKALVAFLMQTVQIA IVLALGALIFGYRPTGSLVALTAILLSFSAVLSALGVALALWSHSHDVALSLSNIIGMLA AGIGGSFSTVSSFPDWAQHAARLSPAYWAITAIHEVSLDGASLADVGAQIGVLWGFFAVI AGLALVQFRYHRE >gi|292821925|gb|ACYT02000009.1| GENE 30 21687 - 22610 371 307 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 299 1 308 318 147 29 1e-34 MSHPHALGLEAQGIRKSYGTHEVLRGVDLRVEPGQILGLLGQNGAGKSTLITILCGLRRT DSGSISICGHRPASTEAARSIGYAPQELGIYPDLSVAQNLAAFGELHGLGRREAASRAGE VMDLLGLTEKQGQRASHLSGGQQRRLHAGMAIMHHPRLVFMDEPTVGADVEARSQILRAV RQLSDEGAAVVYTSHYLAEFEELGSDIAILNEGRIVASGTLEEIISSHGRAEVTLEFDRP VASFDGWNADGRLLRHIGDEADPGSRIGEALASPTLQGARLTDVRIRQASLHNAYLQIIK ESDHVTA >gi|292821925|gb|ACYT02000009.1| GENE 31 22805 - 25018 1993 737 aa, chain + ## HITS:1 COG:Cgl1500 KEGG:ns NR:ns ## COG: Cgl1500 COG0276 # Protein_GI_number: 19552750 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Corynebacterium glutamicum # 5 422 7 369 370 234 36.0 6e-61 MPGMDTYDAIMLLSYGGPNGEEDVLPFMRNATRGRGIPDERLLQVAAHYKRFGGVSPINA CNQRLIADLSAELARRGHDIPVGWGNRNWHPFVAEGLDELAQAGARRILVLPTSAYASYS GCRQYREDLAEAAEALRDKWGTIELGAEDSADNRNADIILDKVRPYYSTPGMASAQIASV QRAWEALAARGADTSGIRLIFVTHSIPVSMEAGSSPFPFRASNDEAVAASGGRVDEQGSV ASSEAGTPATEISYVAQHHALIGAIMPELRRVLGRVDLGYDLVYCSRSGPPQARWLEPDI NDFLEEIAGDASPLTGVVVVPIGFICDHMEVVYDLDTEAKETAARLGIPYERADTVATDP AFVSSLVDVLEERAAQARGENPVPVTVTGTGPFHTVCPSDCCLSPARPGHLGPAAGSAHP GAAPHSSGAPARAAVQPATTQEDSMSTPHPHAVVPPEQNPENPGHPAGVPDRVGEHAARH QARHAGTEATPHSHAAHARVTDPRDATDVDFDEVNNKQHYALYSVFALGESLPAGDGERG RIVAESLDYVKGAGAEIRGFYDVSGFRAEADLMVWWLDDDPEVLQDAYHRLRASALGKFL DPVWSCMGLHTPAEFNKRHIPACFGGVAPRDWAMVYPFVRSYDWYLKAPEERARIMAEHG RNGFAHYPDVKGSTLSAFGFSDYEWVLAFEADSLDRLEGVMHAQRYTEARLYVREDTPFF TGPRVSLGEWAERQPRA >gi|292821925|gb|ACYT02000009.1| GENE 32 25111 - 26091 1045 326 aa, chain - ## HITS:1 COG:no KEGG:Ccel_3463 NR:ns ## KEGG: Ccel_3463 # Name: not_defined # Def: carbohydrate-binding family 9 # Organism: C.cellulolyticum # Pathway: not_defined # 80 323 443 690 691 115 31.0 2e-24 MRRSNRIGIIAASVAITLSLFGLAGLTSAALHRTGHGQKDPAPVSYEEDGTTSALAVRAL EGSIQQITYEQAYEGVTYEKEALVYVPASYTPGVPANIVYLTHGWWGTADGLAGGVAPVV DQLTSAGSIAPTIVVFATYYPDRSFATEDYEDDYALNRFFATTEIDTLIKAVESRYTTFA RGDTSDESLRASRRHRAFGGFSMGSTTTWDVFALRPQYFYGYIPMAGESWIGRETDADTD QIAQLIAAGAERAHYGPQDFRILASVGSDDPALWDMMPQLTQLQSDYPDLMTDASLQLWI DEGENHSMTSVRNQVAHDLPLLFPPA >gi|292821925|gb|ACYT02000009.1| GENE 33 26134 - 26391 74 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSTVCPVGPPLPIGVSVATKWCLCCYSLAWPVLYCVLPPIPHVIPSPILIDFKCDRWNS GVSGGLVKWELGELRAKFWGQSGEE >gi|292821925|gb|ACYT02000009.1| GENE 34 26464 - 28842 2071 792 aa, chain + ## HITS:1 COG:no KEGG:BAD_0880 NR:ns ## KEGG: BAD_0880 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 54 552 46 545 552 295 38.0 7e-78 MGANMTRDLIRRGDNERLVFSETPLPQLTDVRVEGTYEVSLSEAGEADEVEAFEFDPNTS PAQARDYVFAAASGTLMGALSVLWQKDFNLADARKFGAEKIEKIVIGAAQRVGLKKENPS IADAIRFLEQIFPFAGDKLTDVFGGGLQHHLRDFSHHASPVGLVCSILMQFTGKGFGTTT DGSFAIFDLPAEALKDGRLFGRNVEEKFLYGTLNWVLHLISDMAGSSSTPGAGTGIPGPI LSFLKEASALPFFRDMTIAHEDKVATFSQWVSKAFNGTLLKDQDGNPLRFDLRTEVGLAS QILTQVPAVLANECIVRGFYTITRFIDELRRADVSSVKDLGRINPSRFLPLNSRALTRML TVASGAFVVINTSIAAVRAAVAGAASGEVGAVPLFFMRLNYVGIGRFAFALWADRSYIYE DVEQWWERCQASKMGTDVAVHAPMGEEVQRVVESLRMLWLEDDCRREKNDKQRERKEVLI GAWVRRQRIAHDGSQGEYFLDAADAYRELEAACAGEDGELVRLAIAQQLLAYRPYATEKK LSLSQTWLTDVFTSDQDVIDSETLKRLKSARASYDRWLSGTYTKWAVRGAAAVAATVATG GVAAVAAPAIATVLAGEAVVGLSGAALTSASLAWVGGGSLAAGGLGMAGGTAIITGGGAV LGLTAASSGAALVGAFSKDYAERVKQGCIEWLAQCSVLLEESPAQALRAIEDSKARLERA IDADKRTIDALKGAKEKDEKKLRQSLNEGVSHLRYTVDELGKLEQKAREAAVERGDLAPS GSTDIARVPESD >gi|292821925|gb|ACYT02000009.1| GENE 35 28900 - 29499 647 199 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988990|ref|ZP_01820390.1| hypothetical protein CGSSp6BS73_02415 [Streptococcus pneumoniae SP6-BS73] # 10 198 4 192 192 253 60 1e-66 MTPEIIDPAVRAIAEEIAADPANASYTKRGVGPLFYAGPECRIMIVGQAPGRVAEETGVV WNDRSGDRLRDWMGVDRDTFYESGKLAIVPMDFYFPGTGKSGDLPPRKDFADTWHPRLLE LMPKLEMTILVGAYATRRYLGLKSSASLTEVVRDYKRYLPTYFPLVHPSPRNQMWMKKNP WFAADVLPDLKARVASLLA >gi|292821925|gb|ACYT02000009.1| GENE 36 29538 - 29978 169 146 aa, chain + ## HITS:1 COG:AGc57 KEGG:ns NR:ns ## COG: AGc57 COG1186 # Protein_GI_number: 15887394 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 146 24 156 156 85 44.0 3e-17 MDDLCIPAGPGCPRGLVVPAGELVERFSHASGPGGQGVNTADSRVQLSLDLAATVALNDK QRERALSVLGDRLTGTLLTITAAEHRSQRRNRAAARERLAEVLRLALVPPVPRRATKPTR GSKLRRLADKKRRSEVKARRRRPDAD >gi|292821925|gb|ACYT02000009.1| GENE 37 30000 - 30833 746 277 aa, chain - ## HITS:1 COG:HI1273 KEGG:ns NR:ns ## COG: HI1273 COG0500 # Protein_GI_number: 16273188 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Haemophilus influenzae # 20 145 29 154 268 70 32.0 4e-12 MATRSNAREESINRDSQAYWNKRAATFTRNATSDYENWLLGHLSLDEADTVLDMGCATGT LAVPLARAGHRVHGCDFAEAMLAILDERAAAENLPITSHLLAWEDDWEEAGLGHNSVDVA FASRSLMSGNVFSAVRKLDAAARSRAAVVVPDSLLPSRDPRLLTYLGRSARHPRVVREII RALASLGRIPIFATTRTFRPMRFSSFDEARSDLRRLAGPEPFTAREQRLFDAYATQHLTR KVVQSPTGEDRQMWVLDYPLPVTWVFIGWRTDGHAWA >gi|292821925|gb|ACYT02000009.1| GENE 38 30942 - 32021 1247 359 aa, chain + ## HITS:1 COG:SA1154 KEGG:ns NR:ns ## COG: SA1154 COG2008 # Protein_GI_number: 15926897 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Staphylococcus aureus N315 # 19 350 3 334 341 342 47.0 8e-94 MLASAWNNICVNSSHALPNFSSDYQEGAHTRVLDALVATNMEQSAGYGTDEHCERARELI RDACATPDADVYFLVGGTQTNATVIDAILLPWQGVIAPNTGHINMHEAGIVERGGHKILD TPAVDGKINAADVERICSAWEGDGARDHMIAPALVYISQPTEYGTLYTCRELEELSRVCR ERDLKLFVDGARLAYALASPANDVTLADLARLTDVFYIGGTKCGALFGEAVVIPTRGSIR QFVTQMKQHGALLAKGRLLGVQFEALFEDGLYLTIGEPAVKATARIRGALKRAGYVVTMD SPTNLTFVALDQAGHERLSRKVRYGIWETLPDGRYLARIGTSWATPEEDVVAFEEALAR >gi|292821925|gb|ACYT02000009.1| GENE 39 32084 - 32449 441 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189117|ref|ZP_06607843.1| ## NR: gi|293189117|ref|ZP_06607843.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 121 1 121 121 201 100.0 2e-50 MTTSPSAAELVHLVTAIPGVRGIEPGLASTLKVIGKRMQQQESQQDRFGIIIEEGTNRAI VEVGLDESRPVKEIVRDIQETVIRSLTEPDARDNEAVSDEDSEHVDNPPGHRVTVRVQSL L >gi|292821925|gb|ACYT02000009.1| GENE 40 32439 - 32876 192 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189118|ref|ZP_06607844.1| ## NR: gi|293189118|ref|ZP_06607844.1| hypothetical protein HMPREF0970_00154 [Actinomyces odontolyticus F0309] # 1 145 38 182 182 263 99.0 2e-69 MIASLHKEWDELEAQGSSSVMPRRSLMDAIAAETRHGSQVEMPETDLGPYSMSEFSLRAL IRKTIDAVPGARALRSSMTHAPTSKEHRGLGVPETISCRISAHISVDNLPLLAQQVRDAL RAACRENLGVSPIVNIHIEDLHDDD >gi|292821925|gb|ACYT02000009.1| GENE 41 32987 - 33574 279 195 aa, chain - ## HITS:1 COG:VC2467 KEGG:ns NR:ns ## COG: VC2467 COG1595 # Protein_GI_number: 15642463 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Vibrio cholerae # 11 192 7 187 190 97 34.0 1e-20 MTTSSGASHDDRCLVLRAQDGDIGAFEKLVNRYQGRLFRSAYMIVRNRQDSEDIVQETLI QAWRSIHLVREPAAFRGWLLRICTNKATSLMRKQRRRSTDPYDAESLETASNTAQASANN SADPADSSEVNAQIKALADILASVPANLRIVWVLREIDEMTYEEIGQTLNLTVPTVRGRL ARARSLVMRKMKEWS >gi|292821925|gb|ACYT02000009.1| GENE 42 33639 - 34292 466 217 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189120|ref|ZP_06607846.1| ## NR: gi|293189120|ref|ZP_06607846.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 217 1 217 217 364 100.0 2e-99 MRSVSGAFNRIILATFGLALVAAASWLVASGLGAGRYWPATDRYLVSAQDSVSSIIAPLT HSNLLIPIGALLSLFAIIAGAFVLIKQIPRKAAASPLRITGSQGSLVASLAPDVLSQALS ERAQEIPGVEQCSVWVAGSHKNLWVQADITVSRDSAVEWAVSALRNRLNEDIATSLGAAP RQIDVLMNLNSPARSHSRSEAVTGQGAPVIDGTIVDA >gi|292821925|gb|ACYT02000009.1| GENE 43 34306 - 34854 456 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189121|ref|ZP_06607847.1| ## NR: gi|293189121|ref|ZP_06607847.1| benzoate membrane transport protein BenE [Actinomyces odontolyticus F0309] # 1 182 1 182 182 253 100.0 2e-66 MRTPVPSLIRLPSRTIPSIILALLLLTAGGLGAWITGHRIITGSWPTPAATALSAIGSAP VGSPAALAVALLVAVFGLSMILSALWPGLPGRLEILPDDLPGQTAAKRRDLADLIRSQVE QVDGVHSVAVTIRRSRVDVLVLSVLDNLAPVQDAARQQTNEALALLAPVGISRSRVRVQQ TR >gi|292821925|gb|ACYT02000009.1| GENE 44 34851 - 35267 199 138 aa, chain - ## HITS:1 COG:no KEGG:Sked_27150 NR:ns ## KEGG: Sked_27150 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 25 131 18 124 135 63 34.0 2e-09 MATATQRAIAQPGPPEDSHPSWEDRGTTTIPSRVVSRIAAEAAYETANVGSNAGGLLGIG ARHNFHSRPEATCDIYGQVAVIHLNLGLTFPAPLSSIVEDLRAHVCRRVETLTGLTVSKM TIEISWLHPSSHVRKSLT >gi|292821925|gb|ACYT02000009.1| GENE 45 35270 - 35446 229 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509616|ref|ZP_02045258.1| ## NR: gi|154509616|ref|ZP_02045258.1| hypothetical protein ACTODO_02149 [Actinomyces odontolyticus ATCC 17982] # 1 58 1 58 58 94 100.0 3e-18 MKTTHLALLTGLFLGTILAFGSFADFVLVALCGLVGWGVGLCLEGRVDVRSLLDRRKK >gi|292821925|gb|ACYT02000009.1| GENE 46 35480 - 35956 765 158 aa, chain - ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 8 147 15 149 169 68 38.0 5e-12 MSKNAIPQTGQQRERNENVEEEKTLRGPLQTEHGVTTIDENVVAKIAGMATREVPGVYDM GNAVRRAFSAVTDRIPNAQTNVAGGVSVQKGETQAVIEITIVIEYGVSIVEVSNAIRRNV IEQLEGTTGLEVVEVNINVTDVHLPDEDADDSEPADLK >gi|292821925|gb|ACYT02000009.1| GENE 47 36207 - 36464 415 85 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_05770 NR:ns ## KEGG: RMDY18_05770 # Name: not_defined # Def: predicted membrane protein # Organism: R.mucilaginosa # Pathway: not_defined # 17 85 36 104 104 74 65.0 9e-13 MLSLIGMVITGAVLGALARLIMRGEQSISILWTIILGAVGALIGGTIASFFGVADTSGID WIRWALSLVAAIGAISVYLKLAGRK >gi|292821925|gb|ACYT02000009.1| GENE 48 36746 - 37468 1076 240 aa, chain + ## HITS:1 COG:RSc1608 KEGG:ns NR:ns ## COG: RSc1608 COG0778 # Protein_GI_number: 17546327 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Ralstonia solanacearum # 5 234 9 227 235 102 29.0 5e-22 MTLNEEMNDFSALTASRHSTRAFTNREVPARVLEAILKDATTAPSWSNTRAFRLALATGE RAQRLREHYGRLFDEEIEAHACKAEDPTVEIPVPDGDYPVRKRYPDELRPAQIEVAKLLY GIYGVERGDIEGRNRVNRRNVVAFDAPVMGFVFVHEDMLPWSAMDAGLMLQTLFLSAKSR GVDSCPVGILATWREPVDAEFEIPEHYRFITGFTLGYADPEAPINAMKAPRPPIQLLDGK >gi|292821925|gb|ACYT02000009.1| GENE 49 37471 - 37728 277 85 aa, chain - ## HITS:1 COG:asl4561 KEGG:ns NR:ns ## COG: asl4561 COG2026 # Protein_GI_number: 17232053 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Nostoc sp. PCC 7120 # 1 84 2 85 87 73 41.0 7e-14 MYRVEFTSAAARKVRKLDRPVRARLLDAIELLAHSPRPDGVKKLTSTENAWRIRVGDYRI IYSIEDDVLVMTVVRVAHRREIYRS >gi|292821925|gb|ACYT02000009.1| GENE 50 37731 - 37994 348 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189129|ref|ZP_06607855.1| ## NR: gi|293189129|ref|ZP_06607855.1| toxin-antitoxin system, antitoxin component, PHD family [Actinomyces odontolyticus F0309] # 1 87 1 87 87 129 100.0 5e-29 MNTLATTLSTRELRANLSDILGRASYGGERIGVTKNGRLTAIVIGVDDLLALEELEDARD LAAFREAVRNDDGQRVSLADLRAELDA >gi|292821925|gb|ACYT02000009.1| GENE 51 38148 - 39470 1900 440 aa, chain + ## HITS:1 COG:Cgl1071 KEGG:ns NR:ns ## COG: Cgl1071 COG3949 # Protein_GI_number: 19552321 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 1 368 1 368 400 245 38.0 1e-64 MSKKYLSVAFAYVGVIIGAGLASGQDLLQYFLSFGAKGLIGIAVLGVLNVVFGVVALQLG SYYRSGHHDEVFERITHPALRRVIDVVLVFSGFAMGFVMLAGAGANLEQQFGLPAWAGSA LCAVLVVLTAFLDFDRIMKVIGVFTPMIIVAITILTVYSLATPHPGVAELNAAATKVTPA LPNLWLSTINYFALCVVNGIAMAFVLGGSVLRIGEARRAGRVGGTIIALVIGADALCLYL NMDRVWDVNVPALEIARSIHPAFAFVYTLIIFALIYNTVFSLFYSTARRFSGGSTGRMRI VLVGVVAVGYAASLMGFKKLIGGMYPIIGWLGVALLVVLAVGWLRERSSVLREENLRRKL IRLLVRKHADDLEYTDEHRAQARTLARASIVNGVELRRDAGSIAEQIADTQDDAAAYARA ALPVDEALIEEALEADRSNG >gi|292821925|gb|ACYT02000009.1| GENE 52 39472 - 40077 331 201 aa, chain - ## HITS:1 COG:SP1463 KEGG:ns NR:ns ## COG: SP1463 COG0350 # Protein_GI_number: 15901313 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 194 10 162 176 131 43.0 8e-31 MPTEITPSSSDPTLATYDSPIGRLTLAARDGSLVGVWVAGQRFFGRLYGINEVVAPSSVD LTSPDSRGSVHAEAGWDEADARVLRAAASWLDDYFAGEAPSPAAVRLAPAGTDFQKRVWE EMATIPYGATRTYGQIVNQLRGAGIPASAQAVGGAVGRNPLLLILPCHRVVAASGPGGYA AGEHAKAWLLAHEAATASSVS >gi|292821925|gb|ACYT02000009.1| GENE 53 40046 - 40639 574 197 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_06500 NR:ns ## KEGG: RMDY18_06500 # Name: not_defined # Def: permease of the major facilitator superfamily # Organism: R.mucilaginosa # Pathway: not_defined # 1 197 10 206 206 362 97.0 5e-99 MTAYDHSSGYTYGTDAVPTSPLTLEDLRQIEAAAHVQPGDAELLARAEPILAPHAMEMVD TWRGILAQQTYLAAHSAHPDGQPNPKYAQASKPRFAQWIIDMCTRERDQAWLDYQYLIGA RHMSAAKNAADGADSTPFVPLRYVLAFIAPTVEVGHRLLAEGFEGEELSAVRDAWTRAVT VAVTVWAYAYRDHPEQF >gi|292821925|gb|ACYT02000009.1| GENE 54 40836 - 42824 1993 662 aa, chain + ## HITS:1 COG:STM4269 KEGG:ns NR:ns ## COG: STM4269 COG0025 # Protein_GI_number: 16767519 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Salmonella typhimurium LT2 # 4 330 12 335 548 136 33.0 1e-31 MDPLLIALSGMLIIVACQFVAPKVRVASPLILLAVGLAIGFLPQVAAIEVEPHIILEMVL PPLLFSAAVRMPTMDFRREMQAVAMLAIPLVFLSAFAVGFVINWLVPAISLPWGVALGAV LSPTDAVAVSIAKRSGVSHRIITVLEGEGLFNDATSLVLLSAAMNAGLAADEHALNPGLL IGKVALALGIAAAIGWVVGEVGVRVRAHIKEPSADTVFSFAMPFIASIPAEHLGGSGLVA AVVAGLVVSRRRAATISAANRRFSQQNWQTMTLVLESGIFLAMGLQAFGIVEETAAFSGG LAFAAFLAVTLGALIMVIRAVFIAVMLAWLDHRRTHRKRRYEVESTRIERFEKRMNEACE VDADMLEARNLSPEHWANALNHYRRRLKRRARRNAMRGSDLDYFENEPLGPREGSVIVWA GMRGAITLAAAQTISTHAPMRALLLSIALFIAAGALVIQGLTLPALIRLVKPQMATGDIS EEERARLLKVMGSALVDTALAQAIHEVDGKTLLSAGVSRTLSRLGHALTDEATGEQTRTA HAADRVLMDILQDAAAQEGATRDGLCPECADDDLETAATRDVESDGDDDDGHGTVDMSEE EVERSFTRDQIRELALEAIHAQRDALLQARDEGIFSSAALEGALARLDNEEILLVSSRGV DN >gi|292821925|gb|ACYT02000009.1| GENE 55 42861 - 43433 788 190 aa, chain - ## HITS:1 COG:no KEGG:GALLO_1344 NR:ns ## KEGG: GALLO_1344 # Name: not_defined # Def: putative acetyltransferase (GNAT) family # Organism: S.gallolyticus # Pathway: not_defined # 17 172 16 162 181 98 35.0 1e-19 MTDLTQIPVPNEGPITDKVKEIYERSFPPEEQIPLPELLTSTQLDEVSFLAWIDPSLSAG EDGAGNMVALTFSFVFPDLFYLGFLAVDGRTRSAGYGSRILTHFRERYGDVPQLLEIEPV VREAGNYQQRVRRLAFYERNGFTVTNMLTHEADQTYRVLARNGIVSPQRLEEALNSVTDD PAYASRVTTD >gi|292821925|gb|ACYT02000009.1| GENE 56 43652 - 47050 5080 1132 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 290 3 290 290 224 42.0 8e-58 MLELKEIVKAYQTANLVQVALNKVSVAFRDNEFVAVLGQSGSGKTTMLNVIGGLDRFQSG DLVIDGISTKDYKARDWDAYRNNRIGFVFQAYNLIPHQTVLANVELALTLSGVSRSERRK RALDALERVGLKEHVHKKPSQMSGGQMQRVAIARALINDPEILLADEPTGALDSKTSVQV MDLLRDVARDRLVIMVTHNPDLAHQYATRIVELADGCIVADSDPFVPTAEDRREAKPARR TSMGFLTALSLSANNLMTKKGRTLMTSFAGSIGIIGIAAILALANGTNAYIAKTEEETLG AYPLTIQKSGIDMTAALSVSASDSKDSQPAPDGKVGVSKLRTFADTIRDAKTNDLASLKT YLDNNGGGIDTMVNAIEYDYDIVPQIYQTDTSKEIVQVSPDQSMKQMEAGFGAGAFGSMM QTNAFYQMPATTSLYTSAYDVVAGSWPSGANQVVLVLDEDGNIPNLFEYTLGLKDHKEFD DLMRSYYQGALGGKSQSGAQSGASTATYDYSAILGTTFRRVNAFDKYTWDDTYKVWTDRS SDTDYMKKLVDGGQQLTISGIVKPNSDKGGALRQGIAYTPALTYRIVEEAAASPIVKAQR AKPDVDVFTGKTFKELADNQKSQSGGFDMSSLFTVDESKLSAAFQIDPNKMQMDLSGLDF SGLDLSGLDFSNLDMSGLDLSTIDLSALSAQSGAQSGMAFDLSGLDFGELSKDLPQLANV DFQTIIRSALADGAVKDGAADYLSAQASQIAQGFQDYAREQIEAGGTTDFATLASAYFSQ PEVLEQLRAAVSSDQVVDSDKLAANLTKALGEDPALAQIGTDISTQVMNAISTQIAAQLG TTLTQGVSAVIGQVMQEAMTNAMTSMMTQLSTAIGNQIGSTMEQFATNMSSAFSMDPQAF AEAFQSNVDEKSLAALMATMFSTNVPTLETNLRNLGWADIASPSNISIYPKSFADKDKVK AALDAYNADNKAAGATDKVVTYSDVMGALMSSVTKIVDIISWLLIAFVSISLVVSSIMIS IITYISVLERRKEIGILRSIGASKGDVSRVFNAETVIEGLLAGLIGVGVTYGLCAVANAI AYSSFNVENIAQLSPLTALTLIAVSVGLTVIAGVIPASRASRQDPVEALRSE >gi|292821925|gb|ACYT02000009.1| GENE 57 47162 - 47746 881 194 aa, chain + ## HITS:1 COG:CAC1629 KEGG:ns NR:ns ## COG: CAC1629 COG0693 # Protein_GI_number: 15894907 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Clostridium acetobutylicum # 13 192 3 179 188 123 39.0 2e-28 MPTPDKLATDATVAIMLADGFEEVEALAVADVLYRAGVRSDLISVTDARHVTSSHSIRVV ADLMLEDVDLSTYTVLFLPGGMPGTLGLKGTPAIQAEVLRRSDAAQPIAAICAAPSILSE LGVLDGRHATANPAFVKAIAEGGAIVHENPVVIDEQIITSRGAGTSLELGLEIVRLLLGD DVVDEVARGVVLAR >gi|292821925|gb|ACYT02000009.1| GENE 58 47786 - 48697 1011 303 aa, chain + ## HITS:1 COG:BMEI0986 KEGG:ns NR:ns ## COG: BMEI0986 COG0084 # Protein_GI_number: 17987269 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Brucella melitensis # 20 284 4 239 265 142 35.0 8e-34 MSPRKPRPWPDAPVPLAAPVVDNHTHLPTHVGEIPRREGVALSLEEQLDRAREVGVTRMI SSACELPDFDPMIELARAHEGVRVAIAIHPNDAALHAGCADPSPDGLVPVVRDYHVPLDE ALAAVEARLDDPMVVAVGESGLDYFRTADPGREAQKESFRAHIDMTQRAGLPLQIHDRDA HEDTLAILDERASEDQRIVFHCYSGDAAMAQRLAERGWYASFAGPITYPANSDLRAALAV LPRELVLVETDAPYLTPVPWRGCPNASYVMAHTVRFIADQWGVSEAAACDQLRANTEAVY GTW >gi|292821925|gb|ACYT02000009.1| GENE 59 48916 - 50076 1471 386 aa, chain + ## HITS:1 COG:Cgl0885_1 KEGG:ns NR:ns ## COG: Cgl0885_1 COG3583 # Protein_GI_number: 19552135 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 6 330 15 314 314 71 23.0 2e-12 MSFQPSRTTVISVAAATALVVAGTAATAIGTSYRHVTVEVDGVTRDVSGFFTTAGDALHS AGVTVGDHDLVAPASNQTVASGDTVVVRTATEYDVTVDGNQTTAWSTASSISGVLSALPA SAVSMAADRSYTRAEMPIAEAGQTVHVVADGTTTDVVVSSDEGTTAILEKAGVSAGPIDR VTLEHNGGEATLRVARVVRGTVSSTTEIPYEIEEREDAEAEEGTEKTVQEGVAGSEVTET YQETIDGDVTVSAVLSATRTEPTKRIVSKGTKAKKAEDTSSSSSTSSDSSGASSSGSSAS APAAVSGDDAAIWAAIAQCESGGNPSINTGNGYYGMYQFSLPTWRSVGGSGLPSDASVEE QTMRARMLQQRSGWGQWGCAYKLGLV >gi|292821925|gb|ACYT02000009.1| GENE 60 50173 - 51612 1877 479 aa, chain + ## HITS:1 COG:Cgl0885_1 KEGG:ns NR:ns ## COG: Cgl0885_1 COG3583 # Protein_GI_number: 19552135 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 40 303 22 293 314 80 27.0 6e-15 MNHHLSTSLSASAASALHVLGAHVRSFAPSPRIVLSVAALASAGVLGVAGVGVASSHTSV MLEVNGVSRPVTSWGNTVGDALHAAGVSVGSNDLVQPGTGEAVRDGDTIIVRTSKPYTVA VDGQTRTLWTTASSADAILADAAPLGSTVSLAADRSSSRDELTPLVSRARNVVVTVDGTT REVAARPGQDARAILKASGVSVHPLDRVNVTTGEAGELSINVSRVTRGEATETVEIPFSE TTTTNSDLFVGESQVTTVGVNGVTTWTVWQEKKGEEVLTTVPITEHSTSQPVTQVRSEGT KEATPAALVAAGIDPKATLEEKVEADGTTSVRYRAKLGTISTKEEIAAIAADTKNTDSAT AAAAAAAAAAAGAVPTTYSGEDPRSLAKPLVAAQGWGDSEYQCLVLLWNRESQWNPYAEN ASSGAYGIPQSLPGSKMASAGADWRTNPITQINWGIGYIKGRYGTPCSAWAHSSAVGWY >gi|292821925|gb|ACYT02000009.1| GENE 61 51967 - 52620 646 217 aa, chain + ## HITS:1 COG:no KEGG:Apre_1054 NR:ns ## KEGG: Apre_1054 # Name: not_defined # Def: hypothetical protein # Organism: A.prevotii # Pathway: not_defined # 30 195 26 187 201 90 28.0 5e-17 MGFSTVAKLAASVVIAGVGFAGGMKAAPVFGVGSGDQGGEPVVTVDTTLVKNSFADIGEL ATESYNFTQVGKYSEQGTKVFGMEVPGTSAHYLITYSGEVKAGVADVSRIQVEVDETGHV VTVTVPAVEILSASIDPASVETYDQSFSIVNQIEVGEVTTFLADREAAAADEAVSKGLLD KAQGRLEDVVKKQVNAVLGEQASKYEVRVVLPPAPAP >gi|292821925|gb|ACYT02000009.1| GENE 62 52685 - 53671 1436 328 aa, chain + ## HITS:1 COG:Cgl0886 KEGG:ns NR:ns ## COG: Cgl0886 COG0030 # Protein_GI_number: 19552136 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Corynebacterium glutamicum # 26 309 4 284 293 286 57.0 3e-77 MSRSSQRNQRDTRRRLDPTLPEGAVPSETGLLGPLEVKAISEALGIRPTKVLGQNFVHDA GTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLEVGARVRAVEIDPTLAAALPQTVRARM SEAADRLHVVTMDATEISGIDDFGVDWPAPTKLVANLPYNVAVPVLLNMLEAFPSVQGVV VMVQAEVADRLAAGPGSRTYGVPSVKASWYGSVERAGTIGRSVFWPVPGVDSALVRLTRL ETPRGDDELRRATFEVTDVAFGQRRKTLRAALKNWVGGPEASEALLSAAGIDPTRRGETL SIDEFVELGRAVIEARANGTLAASTAAR >gi|292821925|gb|ACYT02000009.1| GENE 63 53711 - 53996 382 95 aa, chain + ## HITS:1 COG:no KEGG:Arch_1587 NR:ns ## KEGG: Arch_1587 # Name: not_defined # Def: 4-diphosphocytidyl-2C-methyl-D-erythritolkinase # Organism: A.haemolyticum # Pathway: Terpenoid backbone biosynthesis [PATH:ahe00900]; Metabolic pathways [PATH:ahe01100]; Biosynthesis of secondary metabolites [PATH:ahe01110] # 4 91 7 80 316 63 43.0 3e-09 MREVRASAPGKVNLTLRVGAPTPDGYHPLVTVFEALNLRETVTVRTSKTPGVRVETIAYL PDGSIDEATTRAMADVDPQTHLAVRAARVLQRLAA Prediction of potential genes in microbial genomes Time: Tue May 17 05:50:56 2011 Seq name: gi|292821881|gb|ACYT02000010.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.18, whole genome shotgun sequence Length of sequence - 38405 bp Number of predicted genes - 42, with homology - 38 Number of transcription units - 24, operones - 10 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.500 + CDS 3 - 569 511 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 2 1 Op 2 . + CDS 569 - 2503 2370 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 2541 - 2578 0.3 3 1 Op 3 . + CDS 2595 - 2915 296 ## gi|293189146|ref|ZP_06607871.1| conserved hypothetical protein 4 1 Op 4 . + CDS 2912 - 3211 278 ## gi|293189147|ref|ZP_06607872.1| pyrroloquinoline-quinone synthase 5 2 Tu 1 . - CDS 3257 - 3643 194 ## 6 3 Tu 1 . + CDS 3564 - 5072 755 ## SACE_2210 hypothetical protein + Term 5311 - 5345 -0.5 7 4 Op 1 . + CDS 5417 - 5869 190 ## MAP1822c hypothetical protein 8 4 Op 2 . + CDS 5869 - 6387 332 ## gi|154509590|ref|ZP_02045232.1| hypothetical protein ACTODO_02123 9 5 Tu 1 . + CDS 6515 - 7042 310 ## gi|293189154|ref|ZP_06607879.1| conserved hypothetical protein + Prom 7228 - 7287 3.1 10 6 Tu 1 . + CDS 7452 - 7727 512 ## Gobs_1770 protein of unknown function DUF1540 + Term 7864 - 7908 4.2 - Term 7730 - 7776 15.3 11 7 Tu 1 . - CDS 7798 - 8409 917 ## COG1309 Transcriptional regulator - Prom 8556 - 8615 76.7 + TRNA 8542 - 8615 42.4 # Gln TTG 0 0 + Prom 8541 - 8600 78.8 12 8 Op 1 11/0.000 + CDS 8653 - 9702 1248 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 13 8 Op 2 9/0.000 + CDS 9727 - 10698 1329 ## COG0462 Phosphoribosylpyrophosphate synthetase 14 8 Op 3 . + CDS 10866 - 11474 492 ## PROTEIN SUPPORTED gi|111022660|ref|YP_705632.1| 50S ribosomal protein L25/general stress protein Ctc 15 8 Op 4 . + CDS 11554 - 12672 1249 ## COG0836 Mannose-1-phosphate guanylyltransferase 16 8 Op 5 . + CDS 12845 - 14026 1551 ## Arch_1271 basic membrane lipoprotein + Term 14044 - 14087 13.0 - Term 13807 - 13849 -0.5 17 9 Tu 1 . - CDS 14086 - 14859 658 ## Bcav_2934 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 18 10 Op 1 2/0.500 + CDS 15000 - 16181 1151 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 19 10 Op 2 . + CDS 16184 - 16909 909 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 16984 - 17041 -0.8 + Prom 16973 - 17032 3.3 20 10 Op 3 . + CDS 17101 - 17265 209 ## PFREUD_16200 hypothetical protein + Term 17276 - 17324 15.8 - Term 17262 - 17314 20.0 21 11 Tu 1 . - CDS 17330 - 17959 900 ## COG4122 Predicted O-methyltransferase - Term 18095 - 18140 14.1 22 12 Op 1 1/0.500 - CDS 18154 - 19284 1831 ## COG0489 ATPases involved in chromosome partitioning 23 12 Op 2 3/0.000 - CDS 19295 - 19870 800 ## COG4420 Predicted membrane protein 24 12 Op 3 . - CDS 19863 - 21167 1631 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 25 13 Tu 1 . + CDS 21268 - 22008 977 ## Jden_0702 hypothetical protein - Term 21923 - 21982 4.1 26 14 Tu 1 . - CDS 22030 - 23538 1816 ## COG0006 Xaa-Pro aminopeptidase - Term 23581 - 23644 13.6 27 15 Op 1 1/0.500 - CDS 23665 - 24663 1292 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 28 15 Op 2 . - CDS 24677 - 26137 2225 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 26147 - 26206 2.1 29 16 Op 1 . + CDS 26375 - 27223 902 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 30 16 Op 2 . + CDS 27220 - 27849 798 ## COG2095 Multiple antibiotic transporter 31 16 Op 3 . + CDS 28052 - 28627 884 ## gi|293189176|ref|ZP_06607901.1| putative LPXTG-motif protein cell wall anchor domain protein + Term 28651 - 28691 13.4 + Prom 28748 - 28807 3.2 32 17 Op 1 . + CDS 28998 - 29300 138 ## 33 17 Op 2 . + CDS 29297 - 31663 3797 ## COG0058 Glucan phosphorylase + Term 31677 - 31726 17.5 + Prom 31743 - 31802 4.2 34 18 Tu 1 . + CDS 31835 - 32221 280 ## COG1725 Predicted transcriptional regulators + Prom 32743 - 32802 1.8 35 19 Op 1 . + CDS 32945 - 33757 881 ## Arch_1151 hypothetical protein 36 19 Op 2 . + CDS 33801 - 34409 590 ## CHY_1724 CAAX amino terminal protease family protein + Prom 34468 - 34527 2.4 37 20 Op 1 . + CDS 34561 - 35538 996 ## Namu_5330 putative transcriptional regulator 38 20 Op 2 . + CDS 35618 - 36709 796 ## COG0666 FOG: Ankyrin repeat + Term 36947 - 36996 2.2 39 21 Tu 1 . - CDS 36810 - 37217 150 ## - Prom 37455 - 37514 1.9 + Prom 37326 - 37385 2.0 40 22 Tu 1 . + CDS 37458 - 37664 132 ## gi|293189185|ref|ZP_06607910.1| conserved hypothetical protein + Prom 37729 - 37788 1.8 41 23 Tu 1 . + CDS 37882 - 38082 134 ## - Term 38103 - 38165 14.1 42 24 Tu 1 . - CDS 38188 - 38403 62 ## gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 Predicted protein(s) >gi|292821881|gb|ACYT02000010.1| GENE 1 3 - 569 511 188 aa, chain + ## HITS:1 COG:MT1040 KEGG:ns NR:ns ## COG: MT1040 COG1947 # Protein_GI_number: 15840439 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 184 120 301 306 108 40.0 8e-24 LWELGLGAEQLQAIGRSLGADVPACLAGGIALGTGRGDHMSVLREGDKEGHHHWVMLLSH QGLSTHEVFREFDRVDVASAPALAEPTPEEVAALCGEPVELRHCLVNDLQAPALRLRPEV AETIGAAKDAGALAVTLSGSGPTVAALARDAEHAHALAATLSGAPTVARATPTHGPACGA RIESTEAI >gi|292821881|gb|ACYT02000010.1| GENE 2 569 - 2503 2370 644 aa, chain + ## HITS:1 COG:MT1707 KEGG:ns NR:ns ## COG: MT1707 COG0488 # Protein_GI_number: 15841123 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis CDC1551 # 1 644 1 591 591 523 48.0 1e-148 MAHLLGTQNVGALAGSRKLLEGVTVGLDDGSRVGILGPNGAGKSTLLRIVAGTQEPDGGV VTRRDGVRVAVLSQADTLNPEDTVIQAVHPGMEEYEWASDPAVRDIHAGLIADINPAALV GTLSGGQRRRVALARVLAASADIVCLDEPTNHLDVEGVAWLATHLNARFARPGASGALLA VTHDRWFLDAVCEHIWEVVPGVDPGGDRPQIAGRVEIYDGSYAAYTLARAERLRQADVAA AKRANLLTKELAWLRRGAPARTSKPKFHIAAAEALIADVPPPRDTVELVKMATARLGKDV IDLEDVSVSFTRPDGSRLDILEGVTWRLAPAERVGIVGVNGAGKTTILNLLRGDLEPTSG RVKRGKTVQVATLSQDTHELDALVDMRVVEAVADVAQTVVVDGKEVSASQMTERMGFTRA RAYTRISEISGGERRRLQLMRLLMSQPNVLLLDEPTNDLDTDTLASMEDLLDTFPGTLVV VSHDRYLLERVTDHQVALLGDGQVRALPGGVEQYLQMRASGDLGAFGSSSRADEAGSASR PVAPSADASSGEDSAGQGSARGGVSDAAARRAAKKEVARIERKLERLRAEASNLEAKMEK LSIQVATDPAAVSELTKVSAAHQDVLSEMDELEEAWLEAADLLE >gi|292821881|gb|ACYT02000010.1| GENE 3 2595 - 2915 296 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189146|ref|ZP_06607871.1| ## NR: gi|293189146|ref|ZP_06607871.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 106 7 112 112 168 100.0 1e-40 MSGPGFGLVVGAQTKAAGYVVDFETELADIADTLEADITGQLSHVNGTYVSILGEALTAW GEAGSPHVGDQDRYAQALISVDEALIAAEEQATEGIIDAGAFGSGQ >gi|292821881|gb|ACYT02000010.1| GENE 4 2912 - 3211 278 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189147|ref|ZP_06607872.1| ## NR: gi|293189147|ref|ZP_06607872.1| pyrroloquinoline-quinone synthase [Actinomyces odontolyticus F0309] # 1 99 1 99 99 137 100.0 2e-31 MSGHDLVFYEAAANYVMDDIDRASSKLRERSTEMSDLVEAGLAEWTDSSEARQAQKECAQ RLNDRAEELAAALDSLKQAFEEIRKAGVNAETLAFAAVD >gi|292821881|gb|ACYT02000010.1| GENE 5 3257 - 3643 194 128 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAIRPRMAAGSPLISNVGAPLCVTLTLNPLHQWFCGDSSRCITSAGHCLITSSHIVSVD PGNLAQPTSCFGNNSKHPVQPLIPLGIKAIQSPYHDRISNHSRVGRIVCNIIGFIAFLQF TELCNRCG >gi|292821881|gb|ACYT02000010.1| GENE 6 3564 - 5072 755 502 aa, chain + ## HITS:1 COG:no KEGG:SACE_2210 NR:ns ## KEGG: SACE_2210 # Name: not_defined # Def: hypothetical protein # Organism: S.erythraea # Pathway: not_defined # 13 307 23 317 785 74 26.0 1e-11 MSVTHKGAPTFEIKGDPAAIRGRIAVMRDRASDFERIAWSLQEISVSGWSGRAAERFHEH FKLQPEKWWCASATFGRAADAWEAYASALEQAQTRASEAKVAYEEGIAAVEAALAEQKWA AEHPKIGIFGMPEVDLSYHPERDTRPGQAKQAQAVADFEAAVSDTDAAGETLSQILYEQA NRSPDPSWAPVHFMKRMGAGIFDGVWGLLSMQYGLALEGMRDYGRYMLGWITWDELQAKQ NQNKISFEDLLVLRDAIIADPVGFAKKMWDALINAEGWKDDPGAALGELVPAAVLAALTA GGGNAARAAAVLESLPVIGEGMMLRDMGVNLGTLALKGAAHMDFGAGGMTGRLSSHLDDY LRTHGMEDLADHWKAKRAFHLRSVPDSAEDLASRVPLTKYQTGGQAPPTEGLVDGYKGAN LAKQRELILGERPDGTSYTYKEWQDQHGHWGIDPHTWLQKWKVDWPPTTAMLVIQRSIRQ LRITSVILVEMLTVSGIRRVTI >gi|292821881|gb|ACYT02000010.1| GENE 7 5417 - 5869 190 150 aa, chain + ## HITS:1 COG:no KEGG:MAP1822c NR:ns ## KEGG: MAP1822c # Name: not_defined # Def: hypothetical protein # Organism: M.avium_paratuberculosis # Pathway: not_defined # 40 144 913 1019 1020 65 36.0 4e-10 MEIDEIPDVHSPDFPNSGVLKWVPDGPTVLARMDRSTVKAYTSFLAYTKTFGPYVDRLGL PNGKYLWQLPENGSPFSLEERSLDIFAMNDPYYQYRIVALPTGFSIRTGINVPQFSMPGG ARQVQFMLGDYPLTVNECLQLGILEAKGND >gi|292821881|gb|ACYT02000010.1| GENE 8 5869 - 6387 332 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509590|ref|ZP_02045232.1| ## NR: gi|154509590|ref|ZP_02045232.1| hypothetical protein ACTODO_02123 [Actinomyces odontolyticus ATCC 17982] # 1 172 1 172 172 310 90.0 2e-83 MSVTEDLIDFARESGAIPSVYNGGGVALTWDAGRSWQHIWDTKNSRCPQAFYGESEYLES RVPTMISDYGEIMLNWAIMRIGEKARWRRRWPRIDVPAALESVAPQWGFEQLTPITGRLT LDGAYIPMEMRTIFPVHPELNQLSQVMQIDFDELLAGYMDPSGGPLLRQWLS >gi|292821881|gb|ACYT02000010.1| GENE 9 6515 - 7042 310 175 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189154|ref|ZP_06607879.1| ## NR: gi|293189154|ref|ZP_06607879.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 175 1 175 175 357 100.0 2e-97 MAFLDEYAAVMNRHTGLEVYNGFKRGHTGLSIDAGFGSGMLLWLEDGQYCFDEEERGKVV KGGIIASPSVELTQKVMVNYTVSILRHSLGFPALGVPTKVEELPEGWSLHKEAAARYDRL DGPHGERLDFEAGAPSYCVALAWLYDVSPSELLNAYMLPDGGPLLRQWLGYPYLR >gi|292821881|gb|ACYT02000010.1| GENE 10 7452 - 7727 512 91 aa, chain + ## HITS:1 COG:no KEGG:Gobs_1770 NR:ns ## KEGG: Gobs_1770 # Name: not_defined # Def: protein of unknown function DUF1540 # Organism: G.obscurus # Pathway: not_defined # 1 91 4 96 96 84 53.0 1e-15 MADMPRILDCSVTDCSYNKEKSCGAAAITVGYSTSCTTFIPLTVKGGLAKSETFVGACQK ADCVHNSALECTAAAISVGAGTADCLSFEAR >gi|292821881|gb|ACYT02000010.1| GENE 11 7798 - 8409 917 203 aa, chain - ## HITS:1 COG:Rv1019 KEGG:ns NR:ns ## COG: Rv1019 COG1309 # Protein_GI_number: 15608159 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis H37Rv # 1 196 1 195 197 211 53.0 8e-55 MSGFARREQLVAVGRSLFAEKGFGATSVEEIAARAKVSKPVVYEHFGGKEGLYAVVVDRE VQALISSLQSSLESSERPRLILENATLGLLDYIERNTDGFRVLVRDAPSDRTAGSFSSVM GDVATRVEHIIAEQFKRSDFDTTWSPLYAQMLVGLIAQVGQWWLDDRRMKKDEVAAHVVN LIWNGQRGLRPHPTLRVRSGEGR >gi|292821881|gb|ACYT02000010.1| GENE 12 8653 - 9702 1248 349 aa, chain + ## HITS:1 COG:Cgl0919 KEGG:ns NR:ns ## COG: Cgl0919 COG1207 # Protein_GI_number: 19552169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Corynebacterium glutamicum # 5 340 8 343 485 288 50.0 1e-77 MSRPAAVIVLAAGQGTRMKSALPKVVHPLSGLSMIGHALRAAHGLDPEYLVAVVRHQRDV VAAEIERVLPSAIIADQDEIPGTGRAVQCGLEALDKAVEPVSGTIVVTYGDVPLLSTDTL ADLVATHEGAGHAVTVLTSRVEDPTGYGRIIRDASGTVTAIVEQRDATPEQVAINEINAG IYAFDADFLRTSLASLGTDNDQGEVYLTDVLAAAAPAGRTAGALELTDHWQSAGANDRVQ LAELGAEMNRRICETHMRAGVTIVDPASTWIDVDVTIGADTTIYPGTCLRGTTTVGTGCE IGPSATLIDAEIGDRSVVPTAWIGQGCVAADTMVTPYSTIGTLIAAPRA >gi|292821881|gb|ACYT02000010.1| GENE 13 9727 - 10698 1329 323 aa, chain + ## HITS:1 COG:Cgl0918 KEGG:ns NR:ns ## COG: Cgl0918 COG0462 # Protein_GI_number: 19552168 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Corynebacterium glutamicum # 9 322 9 321 325 421 65.0 1e-117 MSGLVTTGEKNLVLVSGRAHMDLAHAVGEEIGCGVSPVTAYDFASGEIYVRFNESVRGAD VFVLQSIEGDINKWIMEQLIMIDAAKRASAKRITVVAPFYPYSRQDKKHQGREPISARLM ADLYRAAGADRIMSVDLHASQEQGFFDGPVDHLFAMPVLVDYVRGRVDLTNTAIVSPDAG RIRVAEKWSKKLGGAPLAFVHKTRDTTRPNVAVANRVVGEVAGKECVLVDDMIDTAGTIT EAINVLNNAGAKKVIVVATHGILSDPAAKRLSESGAAEVVVTDTLPIPAEKRFEQLTVLS IAPLLARAIQEVFEDGSVTSLFN >gi|292821881|gb|ACYT02000010.1| GENE 14 10866 - 11474 492 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|111022660|ref|YP_705632.1| 50S ribosomal protein L25/general stress protein Ctc [Rhodococcus jostii RHA1] # 1 200 1 202 207 194 54 9e-49 MSDNPVLLAEERSEFGKGAARRARRAGKVPTVLYGHGAEPRHLDVPGHDLFLIVRGTKNA LVELKIEGKTQLALVKDVQVHPVRRHILHADFLAVKAGEKVDVEVPVVVVGESAPGTVHS VEEFTILVKAPATSIPESLEVSIEGVEAGSAVHVSDLLLPAGVEVELDPETVIVAVQEAA PEEAEEATEEAAAEGDAEGDAE >gi|292821881|gb|ACYT02000010.1| GENE 15 11554 - 12672 1249 372 aa, chain + ## HITS:1 COG:DRA0032 KEGG:ns NR:ns ## COG: DRA0032 COG0836 # Protein_GI_number: 15807702 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Deinococcus radiodurans # 1 363 11 362 372 201 39.0 2e-51 MSDLHVIIPAGGAGTRLWPLSRRRRPKFLLDLAGTGRTLLQGTVDRLEESASSVTIVTGQ AHRDGVLAQLPEFASSDNRTLLIEPSGRDSMAAIGLAAYVVRERFGDDAIVGSFAADHLI ARPELLRSAVETAIGAAREGYVVTIGLTPTEASTAYGYIAPGPALSDEAGEADAVRGARR VAEFVEKPDADTAARYVAAGYLWNAGMFIVSAGVLAAHLARLLPDMHARLETIARAWGTP EFDEVLADNWPHLTKIAIDHAIAEPVAADGGVAVVPADAELGWTDLGDFEALTGIVAEAG NLGEALRVESEGAAVFGSLTQDGEGPLVALVGVPDVAVALTPDAILVTRRDRAQSVKAVV DQLADRGRSDLL >gi|292821881|gb|ACYT02000010.1| GENE 16 12845 - 14026 1551 393 aa, chain + ## HITS:1 COG:no KEGG:Arch_1271 NR:ns ## KEGG: Arch_1271 # Name: not_defined # Def: basic membrane lipoprotein # Organism: A.haemolyticum # Pathway: not_defined # 79 229 91 244 361 100 37.0 8e-20 MNKRTIAALATTATAASLALGACSTTPAATPAASAKVCAAISGAHGDAATDPVATALASA ANDASVAFESASGQEAPASLVTSGCTLIVGADSTMAASISEAARSNPKVRFALVGASFVD SKGAATSLKNGSVVDVDASQAAYLAGYASAGMTTTGTLVVIGGERDNVTSSQMSAFSQGV DAYNLANGTSITVLGWNPVTSDGTYAGSANEVRTATADAISQGADIIAPFAGEANEGAVR AVAEAANPTVRLVWSGLTKNDLKGLTRDEAQSAETAPMSGQSGATVTQQVDTQSFADAFS YIQIADEVRSAIGAPVLTGVVVDYKAAMDTLIAQASAGEKASVVPVSLASGGVILTGFGA YTPMLSSELKLGLSDMVGQIETGGMVISTPFDV >gi|292821881|gb|ACYT02000010.1| GENE 17 14086 - 14859 658 257 aa, chain - ## HITS:1 COG:no KEGG:Bcav_2934 NR:ns ## KEGG: Bcav_2934 # Name: not_defined # Def: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I # Organism: B.cavernae # Pathway: Fructose and mannose metabolism [PATH:bcv00051]; Amino sugar and nucleotide sugar metabolism [PATH:bcv00520]; Metabolic pathways [PATH:bcv01100]; Biosynthesis of secondary metabolites [PATH:bcv01110] # 11 147 82 226 591 76 37.0 7e-13 MTRCANPLLFAGIASFLSARTGGRFRLIIGYETSENQDAARDGAAVIEASGGHALLMPRA LPAPLTAFSVRMVMADGAVYVRASGEALIYLGGRAIDRSHEGALAPDAELALIDEAVAAC GDGSSLPRSLEGWESVGDGMVGAYVDRCTSRIASLEPSGARGTSVSIDEASGLLATLLDH LGVPVVKEGTDLSLSVSSDGRTLSTSVPEERVRSALEDALSTSPAVPTDPGLYCVDPAFV LDADALCAGAALAVLGV >gi|292821881|gb|ACYT02000010.1| GENE 18 15000 - 16181 1151 393 aa, chain + ## HITS:1 COG:MT1240 KEGG:ns NR:ns ## COG: MT1240 COG0624 # Protein_GI_number: 15840646 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 8 379 7 352 354 302 48.0 1e-81 MQLTNLTDPVELTRQMIDIPSVSGDEGPLADAVEAALLDAGFGSVPSLEILRDGDAVCVR TCLGLDQRVILAGHLDTVPIADNVPGRFEERDGATVLWGRGSVDMLGGCAAALALACEAG AVLRSSDEAALNADVTWVFYDHEEVASHLNGLGRVQRNHPEWLVGDLALLGEPTAAHVEG GCNGTLRVIAHFSGRASHSARAWMGVNAIHAMAPVIERIATYGNPVVTVDGLDFRESLSV VRVAGGIANNVIPEAASMTVNYRFAPSTRADDALEWVRGFFEGTGATIEVDDLCEGARPG ADSDVAQRFLSVARQVAASRGEELQLSAKVGWTDVARFTQVGVPAMNFGPGDPLLAHTRD EHTPVSDIVKVHDTLRAFVLAQPAPTPAPHREA >gi|292821881|gb|ACYT02000010.1| GENE 19 16184 - 16909 909 241 aa, chain + ## HITS:1 COG:Cgl1086 KEGG:ns NR:ns ## COG: Cgl1086 COG1611 # Protein_GI_number: 19552336 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Corynebacterium glutamicum # 24 241 28 245 256 286 60.0 3e-77 MTKPTHTYRRGSIVLRGDQIPRMTSDASLLQSDQSADWKHEDPWRVLRIQSEFVEGFEAL AEVGPAISVFGSARTRPDEPLYECAQRIGELLVDRGYAVITGGGPGMMEAANRGAWEAGG TSIGLGIELPHEQGLNQWVNLGVNFRYFFARKTMFVKYSRGFIVMPGGFGTMDELFESAT LVQTGKIRSFPVVLVGTDYWSGLVDWIRSSMVDAGMISPGDVDLLRVVDDPEEAVRLATG A >gi|292821881|gb|ACYT02000010.1| GENE 20 17101 - 17265 209 54 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_16200 NR:ns ## KEGG: PFREUD_16200 # Name: not_defined # Def: hypothetical protein # Organism: P.freudenreichii # Pathway: not_defined # 1 54 1 54 55 67 72.0 1e-10 MAAMKPRTGDGPLEVSAEGRGIVMRIPSEGGGRLVIELNAQEAAELAEALGAAI >gi|292821881|gb|ACYT02000010.1| GENE 21 17330 - 17959 900 209 aa, chain - ## HITS:1 COG:MT1258 KEGG:ns NR:ns ## COG: MT1258 COG4122 # Protein_GI_number: 15840664 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 8 208 14 214 215 156 47.0 3e-38 MADKAQTWVYTEDYVAESDALTAARAVATEMGASPVSAGTGAALRMLAAVSGARAVLEVG TGAGVSGLWLLDGMAADGVLTTIDSESELLGHARRNFAAAGLSSHRTRLIAGRALDVLPR MAARGYDMVVLDGDLEETPQYLDHAVRILRPGGTIAFVHALWRDQVADPARRDAHTVVAR EVVNYLRDSDEFVPTLLPVGDGLAVAVKR >gi|292821881|gb|ACYT02000010.1| GENE 22 18154 - 19284 1831 376 aa, chain - ## HITS:1 COG:ML1080 KEGG:ns NR:ns ## COG: ML1080 COG0489 # Protein_GI_number: 15827530 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Mycobacterium leprae # 7 373 14 380 383 367 56.0 1e-101 MPVTLDSVMEALGQVIDPEIRRPITDLNMVTPDLVTIDGSSVAVKVLLTTAGCPLRTQIT KDVTERVSAVEGVENVSVEMGVMDVAQKKALREKLNGGRPEREIPFSRPDSLTRVIAVTS GKGGVGKSSVTANLAAALAAQGLKVGVMDADIYGFSIPRMLGVDHDPQVIDGMMIPPVGA GGVKVISIGMFVPDGQAVIWRGPMLHRALQQFLADVFWGDLDVLLIDMPPGTGDVAISIA QLLPNSEILVVTTPQVAAAEVAERAGSIASQTNQKVIGVVENMSFLPQPDGSRLEIFGAG GGESVSQRLTAQLGYSVPLLAQVPLDIALREGSDRGEPVAVASGPAAEELTALAKQLSSV NRGLAGRPLGVSPIQH >gi|292821881|gb|ACYT02000010.1| GENE 23 19295 - 19870 800 191 aa, chain - ## HITS:1 COG:Cgl1100 KEGG:ns NR:ns ## COG: Cgl1100 COG4420 # Protein_GI_number: 19552350 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 5 172 9 172 193 134 47.0 8e-32 MADRLDNPIDKRRWFFRRSSGSGDGFGRFAEATARFMGSPKFVLYMTIFVVAWISANLLL ARINANAAWDAYPFILLNLAFSTQASYSAPLIMLAQNRQDARDRVVAEQDRLRAERNLAD TEYLAREIAGLRLALQDVATRDFVRSELRDMLEDLRAEIAADATNASSNEAEPEPEADGA FRPLEDGHTGQ >gi|292821881|gb|ACYT02000010.1| GENE 24 19863 - 21167 1631 434 aa, chain - ## HITS:1 COG:Cgl1101 KEGG:ns NR:ns ## COG: Cgl1101 COG2239 # Protein_GI_number: 19552351 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Corynebacterium glutamicum # 14 418 6 418 430 295 42.0 1e-79 MSIASIELGTKGRRVYIGKLAGTGVFDPLGDQVGKIHDVVVIFRLKSEANVIGFVVEVGP RKRVFLPLTRVTSIEAGSVITTGLLNIRSFTQRPIETLVLSELFDRVVTMNDGSGQVRIL DVAMRQRRPKDWVISTLHVQRVRTSALGFTRSGETLTVDVSEVSGLLKTDSNQAATALLQ YTEDMRPADLADFMHTLPQDRKMAVAMQLTDARLADVLEELGDDDRVAIVSGLEAARAAD VLDVMQPDDAADLVAELPDAQAQSLLALMEPEEAEDVRRLMTYDESTAGSLMTTEPVIFG PNATVAQMLAAVRREDIPASIATVAFIARPPQETPTGQYLGMVHIQRALREPPQTLLGTI LDRDIESVEPNAHIATVTRLLATYNLTVLPVVDEDGHLHGAVSVDDVLDELLPEDWRDFD DDVTDRMMARSIDG >gi|292821881|gb|ACYT02000010.1| GENE 25 21268 - 22008 977 246 aa, chain + ## HITS:1 COG:no KEGG:Jden_0702 NR:ns ## KEGG: Jden_0702 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 7 234 32 241 295 109 36.0 9e-23 MAVVMDPQMPTGTEVASYETYAQARAGVDFLSDAGFDVSAITIVGSDLHLVERVKGRLTI ARASLSGASSGGLWGALGGMLMSAGQSAGGTGTWVAGGIIVGALIGMALSALSFIIRGRS RDLVSSQQVVAQRYAVLASADIDRAYQILQRTPGNRARVVRPRTEQARPQKDSVGFFPDG RPRFGAATKDGEVPGGRQTPEATSARTDVPVSAPDASAPMTNSPESAASAHEDAATSSPE EDQTEA >gi|292821881|gb|ACYT02000010.1| GENE 26 22030 - 23538 1816 502 aa, chain - ## HITS:1 COG:sll0136 KEGG:ns NR:ns ## COG: sll0136 COG0006 # Protein_GI_number: 16331163 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Synechocystis # 67 493 27 440 441 184 31.0 3e-46 MSEEATQSMSDRGDNRSRQPQSSAFRDFIGSGWGPRPTELPARERVADFLNDRTLKAGAP FPGERLVVPAGPYKVRSNDCDYRFRAHSAFAHLSGLGGEKEPDTVLVLEPNDDGTHTPLL FFKPRASRSSKEFYADARYGEFWVGARPSLEELSAQTGLETRHIDTLRDALAKDAGTVQL RIVRGVDANVEAMVNEVRSQAGLPAGEEAREDDERLEERLSEIRLTKDAFELEEMVRAVE VTKAGFEDIIRILPRAVGHRRGERVIEGAFRAVAREEGNGEGYETIAASGNHANTLHWID NDGEVCEGDLVLVDAGVEVDSLYTADITRTLPVNGRFTEVQARVYQAVLDACEAALARAN EPGCRFKDVHDAAMRVIATRLHEWGILPVTPEESLAPEGQQHRRWMPHGTSHHLGLDVHD CAKARDELYKGALLEPGMVFTIEPGLYFRADDLLIPEEYRGIGVRIEDDVVVNADGTVTR ISEDIPRTIADVEEWIARVQSR >gi|292821881|gb|ACYT02000010.1| GENE 27 23665 - 24663 1292 332 aa, chain - ## HITS:1 COG:ECs2474 KEGG:ns NR:ns ## COG: ECs2474 COG0252 # Protein_GI_number: 15831728 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 3 332 6 338 338 224 40.0 2e-58 MRLHVTYAGGTIGMVDSPEGLRPGADLQGWFGSQLEGIELASNITMSTLDPLIDSSEATP EDWQAIINDINAHADEADAFLVLHGTDTMAYSAAALSYALASMGKPVVLTGSQYPLGVVG SDASANVTGALRAAISHRARGVMLFFGHKLLAGNRATKTSSWAFRGFESPSVSPMARTGA PWRWYEAPSAGTGWQDPSPYTRQDVAVIDVVPGMSAARLRAMTTPHPDAVILRTFGVGNI PASEPGLVDVLAELTQAEVPIIVASQCYQSEVMLGHYEAGNALAQLGAIGAHDMTLEALY AKTVFLLSQGKRGADFKRWMDLSIAGELTLQD >gi|292821881|gb|ACYT02000010.1| GENE 28 24677 - 26137 2225 486 aa, chain - ## HITS:1 COG:YPO1937 KEGG:ns NR:ns ## COG: YPO1937 COG1113 # Protein_GI_number: 16122183 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Yersinia pestis # 14 464 19 470 508 470 53.0 1e-132 MSDKDQTQVSTATDAGDAGYNKALKNRHIQMIAIGGSIGTGLFLGAGGRLAQGGPALAFA YAVCGAFAFLMVRALGELAVRRPSSGAFVSYAREFLGEKGAFVTGWFFFLDWAVTVMADI TAVALYMHYWSMFESVPQWVIALVALALVFVLNMMSVKAFGEAEFWFAMIKVATILIFMG VAIWAIITQAHVGEYTAGLHNISESGGWFPEGLAPVFALTLGVVFAFGGTEMVGVAAGEA KDAATILPKAINSMVVRIFFFYVGSVVLFALALPYNAYSSNESPFTTFFSGLGVPHAGDI IQVVVLTAALSSLNAGLYATGRTLRSMALVGEGPRYAARLNKNHVPYGGIIITASLGLLG VLLNAFVPENAFNIVMDLAGIGIAGTWAMILISHLAFLRKVKRGEEQRPEFRMPGAPYTN YLALLFFAVVVASNVTSESGRWTLALFAVVVVLMVAGWYYVRGRVGNLTDEAAASLQGEE TLVAGD >gi|292821881|gb|ACYT02000010.1| GENE 29 26375 - 27223 902 282 aa, chain + ## HITS:1 COG:BH2283 KEGG:ns NR:ns ## COG: BH2283 COG0613 # Protein_GI_number: 15614846 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Bacillus halodurans # 6 250 8 255 290 128 36.0 2e-29 MVKRIDPHTHSAYSDGTDTPAQLLAIAAQAGLDTIALTDHDTTIGWDEAAAAVADTGVSL IRGAEMSCSSSGITVHLLAYLFDPASPGLVDNFRRTREDRETRVARMVENLSADYPITLD DVLAFAPEGGPVGRPHIADALVAAGAFPDRSAAFVQALHPSGPYYVHYWAPDPVEAVRCV RKAGGVPVLAHPRARKRQRLLPEAVIADMAEAGLFGIERDHRDHAPEDRADVERMAREMG LAMFGSSDYHGTGKPNRIGENTTDPQVIAEVIAQGTIEVVEP >gi|292821881|gb|ACYT02000010.1| GENE 30 27220 - 27849 798 209 aa, chain + ## HITS:1 COG:aq_540 KEGG:ns NR:ns ## COG: aq_540 COG2095 # Protein_GI_number: 15606002 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Aquifex aeolicus # 8 199 12 208 214 108 36.0 8e-24 MSLFDVTLFATAFATLTVIMDPVGTVPIFLGLTSRYSQVKQRRAAIQATSVSFGVILTFA ILGGQILRFLHISMEALQLSGGVLLFLVAMELLMGTDSSTPDTGDEGVNVALVPLGTPLL AGPGSIVAVMVAVGQAGTNVGSWIAVIVAVILAHVVMWLTMRFSLMLSRLLGPGGIMLLT KISGLLLAAIATQLIMEGIFQFIATAKLS >gi|292821881|gb|ACYT02000010.1| GENE 31 28052 - 28627 884 191 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189176|ref|ZP_06607901.1| ## NR: gi|293189176|ref|ZP_06607901.1| putative LPXTG-motif protein cell wall anchor domain protein [Actinomyces odontolyticus F0309] # 1 191 1 191 191 182 100.0 1e-44 MKKTTSSLLSATAALGLIAASAGVAFASETPAPDQSANPAPVPSVAPSADPAPGNGADNN DAPQPDPQPSGMPQPPSTPDPEPSQDPQPSQPEPSTPAADQAPAADQGGAGAASGPVGTT GVTTRGQISTGNGPAPVSARGGIRNTNAPVGTPAASNPTLANTGSVASIAAGAGVIALAG GVTLVVARKRH >gi|292821881|gb|ACYT02000010.1| GENE 32 28998 - 29300 138 100 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCGALTVSHVWVGDMLDCGERRCRWGYFRWCLLVTTWVFSLRVNVAGVLRHVAGGGVSPR PVSAHGIVVVNRYPLELRPAPPWGARPRGGHGAVTKKEIV >gi|292821881|gb|ACYT02000010.1| GENE 33 29297 - 31663 3797 788 aa, chain + ## HITS:1 COG:Cgl1277 KEGG:ns NR:ns ## COG: Cgl1277 COG0058 # Protein_GI_number: 19552527 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Corynebacterium glutamicum # 7 786 5 791 795 1061 67.0 0 MTLDLTQSLPSHVRATSGRPVEDSTLMEVWQGLSAAIVDQIADNWAATTERYAKGRQEHY FSAEFLMGRALLNNLSNLGLVEQAREALAAYGLDLGQVLEEEPDAALGNGGLGRLAACFL DSCATLDLPVRGYGILYRYGLFKQLFDNGFQTEHPDPWMEEGYPFVIRREERARIVSYAD LTVRAVPYDIAITGYGTKNVGTLRLWKAEPIEEFDYDAFNSQRFTDAIVDRERTMDISRV LYPNDTTFEGKVLRVRQQYFFCSASLQEIVANYVRHHGTDLNGFAEFNAVQLNDTHPVLA IPELMRILMDEHGLGWEEAWKVVSKTFAYTNHTVLAEALETWDIHIFDRLFPRIAEIVRE IDRRFRIDMAERGLDQATIDYMAPVAGNTVRMAWIACYGSYSINGVAALHTEIIKRDTLK EWYAIWPERFNNKTNGVTPRRWLKQCNPRLAALLDEVTGSDAWVRDLTELSKFTEAGTDE VLERLGEIKRANKVDFAAWVKEREGVEIDPDAIFDVQIKRLHEYKRQLLNAFYVLDLYFR MKDDPTLDTPNRVFIFGAKAAPGYIRAKAIIKLINAIAELVNNDADINGRIKVVFVHNYN VSPAEHIIPAADVSEQISMAGKEASGTSNMKFMMNGALTLGTLDGANVEILEAVGDENAY IFGATDDELPELRRHYDPRWHYENVPGLKRVIDALTDGTLDDSNSGWFHDIRHSILEGGY DPADVYYVLGDFASYRETKDRMAADYRDQKAWNARVWANISRSGRFSSDRTISDYAREVW HIEGEPIA >gi|292821881|gb|ACYT02000010.1| GENE 34 31835 - 32221 280 128 aa, chain + ## HITS:1 COG:SP1714 KEGG:ns NR:ns ## COG: SP1714 COG1725 # Protein_GI_number: 15901548 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 107 6 109 121 86 37.0 1e-17 MRIDDTRPIWIQLADSFRSRITNGTWKPGEKIPSVRDLAIEAGTNPNTVQRALTALDEEG LTIPKRTAGRFVATDDAALRTLRGDDARAAASTYIRACRALGVEKEDAHRLLDERWDTDS EHTGGIPS >gi|292821881|gb|ACYT02000010.1| GENE 35 32945 - 33757 881 270 aa, chain + ## HITS:1 COG:no KEGG:Arch_1151 NR:ns ## KEGG: Arch_1151 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 5 270 4 270 270 107 28.0 4e-22 MFGTLLSYEIRSRARAVTRVLEIIVAAIVLSLVVVALNIPVLSDSALRITYILCCGIPAG FLIAGMIDYWKTLYGQRGYFMMSLPVSGSSILWAKITRICLESLVGLAFAAGGIVATAAE DASRKGMSLAQYTADIRGVLAVFPTSMLIALAVAQVISTLAVVVQTCAVMTIGAEGRFNH MGFGAPMIGFIILYFVNQVIGVVGTLFLPLSINLRTGQFGADIMWTSFISMTDDTPPEVL GLGSFILGPLFAIVMAIWASRSIEKHTSLR >gi|292821881|gb|ACYT02000010.1| GENE 36 33801 - 34409 590 202 aa, chain + ## HITS:1 COG:no KEGG:CHY_1724 NR:ns ## KEGG: CHY_1724 # Name: not_defined # Def: CAAX amino terminal protease family protein # Organism: C.hydrogenoformans # Pathway: not_defined # 12 201 2 193 193 132 39.0 7e-30 MFLLSSAISAFVQLGLFLVIPFAWWAFTARHSVGFASWIGLRRPTWDGRRARLGVAILAW VVIGAASTALLQSLSGDVPAARFAGRGLGGLVPVLLFAIVQTSLAEELFFRGFLGKRVIA RWGFAPGNAAQAIAFGILHVAMFASFADPIWLLAIGILTGASGWIVGWLNEEGAGGSILP GWALHASANLLVGTAAAFNLMG >gi|292821881|gb|ACYT02000010.1| GENE 37 34561 - 35538 996 325 aa, chain + ## HITS:1 COG:no KEGG:Namu_5330 NR:ns ## KEGG: Namu_5330 # Name: not_defined # Def: putative transcriptional regulator # Organism: N.multipartita # Pathway: not_defined # 24 281 40 294 313 211 45.0 4e-53 MEPTNGSFVPASPDLIWMVFIQQVLVLIAWLIGVVVRRVLKNRMTMSTASATLTGLAGLW GGLVIAGWIFDSGDLWKPGMIGVAALVALVVVIVVSLIAAYLHPRPGLDPISEVAKHDES DSLEFKSSARWNMRTGKRDDAMETVIAKTVAAFMNSGGGTLLIGVDDDGRLIGMGPDYST LKTPDSDRFELWIRDMWGQRMGTNAAVLPRLDFAEASDPQEGYERQEVCRVTIPPSPHPV YLRGPKGKGEAELWVRVGNSTRRLEVTDAVQYVSTRWPESVRVSPWTRVRLLALRRREVP TRLPGVVERVLTERAMSGLSAVEEE >gi|292821881|gb|ACYT02000010.1| GENE 38 35618 - 36709 796 363 aa, chain + ## HITS:1 COG:Cgl0131 KEGG:ns NR:ns ## COG: Cgl0131 COG0666 # Protein_GI_number: 19551381 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Corynebacterium glutamicum # 2 351 4 343 355 102 27.0 8e-22 MRLRKTLPADIEQIIASGDVEAVVRAVERCEIGAYLRGSAYEPRLMHFPASEEITDFLLA RGEDINSRDRYERTPIHARVRSRCLDQIPMLIARGGDINARDTSDQTALFDVVERFPVAD VSRMMSWGADPLVVADSRVYGKATLVENVVAWHNFLDTPRALAVIRLLLSVGAPVGERVP IALRAMDRMRCTFITHGLPETISQATFDEASSALSELCALFGVEQREAQRAPGVGERLEL DPSVPALRQYGELWDLLVPDSGQCQTLQGEVIRIAGRVGHEVYDNGGINWDRSFGKLLDQ YLSVVRSGLPMPPDSVARAEAAVASLKSRSMSRQAVDDITELAVVWVRLNPVLVETDLPD VGR >gi|292821881|gb|ACYT02000010.1| GENE 39 36810 - 37217 150 135 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKHIHFRTSSFIRNQSDLKPCPYHKKRPHKERFIYRRNSRSRYSNEKRKPLTTKHIKHRA KYCHKYGKCQQLHSHTKTSFPLANRQSEENASHTENNRNHIHHHAGFSNFPISTMCDISE SFMKKHCDNEERGTP >gi|292821881|gb|ACYT02000010.1| GENE 40 37458 - 37664 132 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189185|ref|ZP_06607910.1| ## NR: gi|293189185|ref|ZP_06607910.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 68 221 288 288 137 100.0 2e-31 MHSDDVPHYCDHPVAFCAEKESFDKSALAGSSTGLSGVALSTRLMSAAVGGLVAGACFSV VNRLFNRR >gi|292821881|gb|ACYT02000010.1| GENE 41 37882 - 38082 134 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVVDEALHQIRRHYTPSDRVRRDGSGVVRRIGCSATERVQCHVTSAVSNESRAHRTRVR EPELRA >gi|292821881|gb|ACYT02000010.1| GENE 42 38188 - 38403 62 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509558|ref|ZP_02045200.1| ## NR: gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC 17982] # 7 71 517 581 581 65 98.0 1e-09 SARSGGTSDSARGSRSRGSQDGDRTLNAGKGGRSDRGTRGRGRGEHSQHPGEASEGAPRA RKRIRRRKGAE Prediction of potential genes in microbial genomes Time: Tue May 17 05:53:03 2011 Seq name: gi|292821859|gb|ACYT02000011.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.19, whole genome shotgun sequence Length of sequence - 27005 bp Number of predicted genes - 21, with homology - 20 Number of transcription units - 12, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1505 2279 ## COG0513 Superfamily II DNA and RNA helicases 2 2 Tu 1 . + CDS 1717 - 2388 818 ## HMPREF0573_10156 hypothetical protein 3 3 Tu 1 . - CDS 2474 - 2701 360 ## Tbis_2994 hypothetical protein + Prom 2687 - 2746 1.9 4 4 Op 1 5/1.000 + CDS 2780 - 5965 2479 ## COG0210 Superfamily I DNA and RNA helicases 5 4 Op 2 . + CDS 5985 - 9413 3299 ## COG0210 Superfamily I DNA and RNA helicases - Term 9166 - 9199 0.1 6 5 Tu 1 . - CDS 9423 - 9716 69 ## gi|154509553|ref|ZP_02045195.1| hypothetical protein ACTODO_02085 + Prom 9535 - 9594 3.8 7 6 Op 1 35/0.000 + CDS 9706 - 10959 1885 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 10970 - 11033 15.2 8 6 Op 2 38/0.000 + CDS 11102 - 12085 1307 ## COG1175 ABC-type sugar transport systems, permease components 9 6 Op 3 . + CDS 12078 - 12899 1117 ## COG0395 ABC-type sugar transport system, permease component 10 6 Op 4 . + CDS 12917 - 14284 1654 ## COG3669 Alpha-L-fucosidase + Term 14291 - 14339 18.0 11 7 Op 1 . - CDS 14330 - 14566 70 ## gi|293189198|ref|ZP_06607922.1| regulatory protein, LysR:LysR, substrate-binding 12 7 Op 2 16/0.000 - CDS 14563 - 15489 1559 ## COG1082 Sugar phosphate isomerases/epimerases - Prom 15539 - 15598 5.0 - Term 15570 - 15609 7.7 13 8 Op 1 . - CDS 15621 - 16613 1560 ## COG0673 Predicted dehydrogenases and related proteins 14 8 Op 2 . - CDS 16709 - 17785 1758 ## COG0176 Transaldolase - Prom 17829 - 17888 2.8 15 9 Tu 1 . - CDS 17896 - 18855 1052 ## COG2188 Transcriptional regulators + Prom 18649 - 18708 2.8 16 10 Op 1 3/1.000 + CDS 18854 - 19819 1160 ## COG0524 Sugar kinases, ribokinase family 17 10 Op 2 1/1.000 + CDS 19893 - 20765 1264 ## COG3718 Uncharacterized enzyme involved in inositol metabolism 18 10 Op 3 1/1.000 + CDS 20788 - 22695 2897 ## COG3962 Acetolactate synthase + Term 22865 - 22907 -0.2 19 11 Tu 1 5/1.000 + CDS 22977 - 24479 2294 ## COG1012 NAD-dependent aldehyde dehydrogenases 20 12 Op 1 . + CDS 24734 - 26350 2011 ## COG0477 Permeases of the major facilitator superfamily + Term 26370 - 26417 6.8 21 12 Op 2 . + CDS 26433 - 26699 147 ## Predicted protein(s) >gi|292821859|gb|ACYT02000011.1| GENE 1 2 - 1505 2279 501 aa, chain - ## HITS:1 COG:ML0811 KEGG:ns NR:ns ## COG: ML0811 COG0513 # Protein_GI_number: 15827355 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Mycobacterium leprae # 62 501 31 473 544 469 56.0 1e-132 MTNTSTEATVPTTDVDTTEKATPASSVEYSAGVVRLGNIKPAAPEVEEATPDISGKGEDL DEKSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIP VLEDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVA FEPQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLL SRVPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMN KVEVVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAF RNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDW DDTPRWSLISKALGLGVPDPLETYHTSPHLFTDLDIPEGTTGRLPRAKRTRAGLDAEVLE DLGGSSPRREGRGRGSRGGSR >gi|292821859|gb|ACYT02000011.1| GENE 2 1717 - 2388 818 223 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10156 NR:ns ## KEGG: HMPREF0573_10156 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 27 221 9 205 207 115 37.0 8e-25 MRRAVELVRHYAGVMAHEFDSVPADDAEVLGILAYSSLAFMTRLAKDGEQAPTFEAHVEH ARMAAQCFKLYQQLEVWSAHRGFDLLAAGNAFSGAYDDLDARTRPTTFAERAVKTFITRG MLGDMLIRVAKVHGLFEGIEDVWPFEQGHWVRAHLGPQIEADEQLSARLSLWGRRVAGEA LGLVRATLFTYPSLAASPETVDEITEYVIKRHGERMKDIHLKA >gi|292821859|gb|ACYT02000011.1| GENE 3 2474 - 2701 360 75 aa, chain - ## HITS:1 COG:no KEGG:Tbis_2994 NR:ns ## KEGG: Tbis_2994 # Name: not_defined # Def: hypothetical protein # Organism: T.bispora # Pathway: not_defined # 1 73 1 73 76 62 42.0 5e-09 MEIFIGIRDNTRQLALDVDMTENELMAKVNEALISAHGVLDITDTKGQRTLVPAHALGYV QIANKTERRVGFAIH >gi|292821859|gb|ACYT02000011.1| GENE 4 2780 - 5965 2479 1061 aa, chain + ## HITS:1 COG:MT3296_1 KEGG:ns NR:ns ## COG: MT3296_1 COG0210 # Protein_GI_number: 15842788 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 27 815 11 794 803 167 28.0 1e-40 MSEIKVRLRSRNADWWRLPELNANQRAVVDAACSGDVIARGAPSSGRSTCALAVFEEAAA QGRSALILAPDRTRADVLTPRAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVEL VTGAAQDQMLAEALESVDAPWPEDIGPQMRAMPAFRGELRNLVARAGEAGMDASSLSEAG ARFGRPEWQGAGAIVAALEEGPERSPEYPRTLRVDLSRIQALAADLIAAWEQDAPKRGVQ APCPVPDVVIVDDLQDCTPSTLRLLRACRDAGARIVAFSDSDVAVAGYRGGEPHLDRRLA SALGVEIAELGQVYDMSRAVRELARQACARIAQSGSPARREAGVADDAPKGALVTHLGAT PSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVAETSRYLARGGVPVAGGGRAFDFA TQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSPLVRADALAIHRLLRRLNAARAQA AEEAGGESAPIPLTAADLVSDPQTWRPAIEQAEQAGGKRARAAAMLARPLETAARLWELG MSGSVRPQERLWSLWEASGVASEWRSRAIASDDSSGWYDDQLDAVVALLRVADVWEQRNP AGSAVGFASELLAGSVPIDTISRVGVRPGGVEVLTPAQAMGRHWQVVVLAGLQDGAWPNL RLRDRILRADLLADVGAGRVAVGEDGREELIDSTRAARRAVLDDEYRLFVAAVTRSRSIV HAGAVRSEDAAPSVFFDLVAYLAGTHRENDIVPVDPVEAPLSLSGHIADLRARAANSDEP ADAQLAATLLALMAREGIASAQPHRWLGAGGTPTSAQDYRGQIVLSPSQFERALACPLRW FLTTIGADAPSNAAASLGTLVHAVAEEHPHGTPEELTEALEARIEELGYNLDTWAGRVAD RHAREIVNNLASYVVGVPGEVTVEQTVSAEVEGVTIRGRMDRLEQVDEGVRVTDLKTGKS GYTKASVAENPQLAAYQMAMLASGEKVAGARIALLGGSKPQIYDQPALQGEELERWRESV REVALSARGPYFEARPSQEVCRYCSFDRLCPARERGRKVVE >gi|292821859|gb|ACYT02000011.1| GENE 5 5985 - 9413 3299 1142 aa, chain + ## HITS:1 COG:Rv3201c_1 KEGG:ns NR:ns ## COG: Rv3201c_1 COG0210 # Protein_GI_number: 15610337 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis H37Rv # 18 778 24 791 821 303 35.0 1e-81 MALSALQIQAIVDATKTPTPEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPD LSPSSILGLTFTRKAAGELGERLRERIRLLSREMPQLRERLDEDPVSLTYNSFAERIVSE HGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDLDEDLTPLGAVGQILHLAGEIAEHGYT VESAREALVSFGRELEQVGETNDDARRLLRANRRRIAFLDPIAEYQKRKRDMGVLDFSDQ LVLATRIVREAPAVRESLREEFRAVLLDEFQDTSVIQMDMLSMLFGDHAVTAVGDPNQAI YGWRGASASSLESFLDRFQTGEAQESQTLTLSTAWRNDQAILDAANRVAAPLREVAAYQE GKEHLKAQSPVLVARDGAGPGHVDVAYAPDYEAALGTVVDFARSVRSQASEGGKRRTVAV LCRRRKDFAYVDAALRDAGIPTEIVGLGGLLDQPAVQDVRAALELAYDVEASPWLARLLA GIDLGATDLMALGDWSRVLARSEGTNPHQAVLVDAVDSPPEPGWAAEGRPAISEEAVRRV RLLGERLRQVREGVGRSVTEQVERAILIMGTLDDVIADPLSMGGRAALDEFIAVTAAYEK DTPGASLGSFLAYLRMADEREDGLEAPLGEPDPRAVLIMTVHASKGLEWDCVVVFGLSDG IFPSHDKRKTVSWLDEPPIATAWLTDASALPHPLRGDRADLPPFLLDVEGEAKPSAAYSK WVKGHYGRSLGVHAEREERRLAYVAMTRARSIQLLVGSWIYRTGSTTRQPSRYLMEARAQ LFGDAPDLVDDTLVRVGDRGVWARGDWRSLGIESVSGAGVCLIAPEPGDEDIVDSAAGTA SVSFPEEPGPSRQRVAAAAQAVGAQIRDLAQDQDVYEALAQLGDDPAVRDTVALIEEYHL GLETPVVDLWAERVPATSVSALLQDADEFARDMRRPMPARPSSFSALGTVFHAWVERELH LASADPASEITAGNEVSAGEDATLAGGDDAADEALLTDGERERLERLRTNFRAFVANELS DYRAVAIEEAFSVQVGGVSVQGRIDAVFERVRGDGPRYLVVDWKSGRPVSAATKPDKVAY FVTQLRLYQRAWAARMGVDASKVGAMVAFLAGPSHHTLESLEAMLGEGTASLDEALRDVL DL >gi|292821859|gb|ACYT02000011.1| GENE 6 9423 - 9716 69 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509553|ref|ZP_02045195.1| ## NR: gi|154509553|ref|ZP_02045195.1| hypothetical protein ACTODO_02085 [Actinomyces odontolyticus ATCC 17982] # 33 97 1 65 65 95 73.0 7e-19 MGRTLRSFLVRGTGVPVNALPLCNACPGTFPKVPSLVIEIDRTTVPASEQGTQGRILHSS HPAINSDDPVKAFNDVGDRLFNRFHQTLVSLSPIQFD >gi|292821859|gb|ACYT02000011.1| GENE 7 9706 - 10959 1885 417 aa, chain + ## HITS:1 COG:BH3690 KEGG:ns NR:ns ## COG: BH3690 COG1653 # Protein_GI_number: 15616252 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 27 391 30 398 420 97 23.0 6e-20 MRPTISKYLALGATASAFALLAGACGSGSTSSGGGASSDQVHQMYTWVSTDNDRAQWQSF VDAAKEKDPNFTLTFDGPAFNDYWTKVKTRMVASDAPCILTTQAARAQELSGLLEPLDSY MEAAGIKASDYNAAMMQGMTVDGKVLALPYDAEPDVLYYNREMFEKAGLEAPSTSYTTEQ FLKDAKALTGDGKYGIAVKPLLLGNAPGDFGIAFGGQVSADGKNTLTDPKFVEGVQFAFD LVHKEQVAVAPNAADNDGPAQTAFTSGTAAMIVDGPWMYGSFEKELGDKLGVAVIPTPTG QPRAVIQGSGFGIAKSCPDKQAAFNVLKELVTPEVIGTVADKQGTVPSVESAMDKWAANK PADSAEAVRVLLENGTPLVTTTTWNQINTSFQQYSPEGFRGTKTAQDILSDLQNSAG >gi|292821859|gb|ACYT02000011.1| GENE 8 11102 - 12085 1307 327 aa, chain + ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 46 325 15 292 292 186 35.0 4e-47 MSVDTVKPGREAPSGAAGAGEAKTSKRGKNSARAEGRRGDGLRALVYLSPGMMGFLLFIV LPLIASLVISFYDWSIFGGGRFIGVENYRRMLSGEDPAFWTVMRNTVVFAACYTALNLVI SIGLSYWLQRVPEWLSRVLRVIFFIPVVTPMVGNALIWRLMLSDNGVVNSALAVFGIEHI PFLNHPALAMGSLLMMSLWQGLGYNIVVLTAGLNGLNTSVLEAATIDGCNGVQRFFKVVF PMISPTVFFCTVMTIIGAFKVFAQPYFLTLGGPGEATNTIVLALYRNGFSFDKLGYASAM AWVLFVIVMTVTALQFAGQKKWVNYDA >gi|292821859|gb|ACYT02000011.1| GENE 9 12078 - 12899 1117 273 aa, chain + ## HITS:1 COG:lin0761 KEGG:ns NR:ns ## COG: lin0761 COG0395 # Protein_GI_number: 16799835 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 10 265 17 285 291 188 38.0 1e-47 MHNKRVSTTISVVLLGLIAVAFLFPFAWMVATSLKPTTEVFSLSPTGSRIAWDNYPSALN SIPFGRVVLNSFIVSLAGAALVVVVSVLSAYAFARLRFKGRDHLFMLFLGTLVLPQEVLV IPLYIGMQRMGLVNSYFALIVPFAFGAFGAFLIRQFLMSLPLEFEEAARIDGCSDWKILT KILLPLLKAPITVVGVFAFIDYWSAFLWPLIVVNDSSLATIPLGLQMFSGERGTDWGPLM AAVTMTTIPSILLVVFLQKQLEKGVTLGAFGGR >gi|292821859|gb|ACYT02000011.1| GENE 10 12917 - 14284 1654 455 aa, chain + ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 7 358 12 357 449 318 48.0 9e-87 MTDTERWSSLARPTPQWFEDAPLGIFVHWGPYSVPAWAEDHGELGVEEDWEAWFTHNSYA EWYFNTIRIPGSPAAQRHKDLYGSASYDVFLDAWDPDAWDPAEWMRLFHRAGAGYAVLTT KHHDGVTLWDAPETGTRNTVRRGPCTDLVAGFADAARDEGLRVGLYYSGGLDWHYRPARP ILSEDDCKDLCRPKDADYARYCFVHVRDLIDRYAPDVIWNDIDWPDEGKNFGPYGLGTLF EYFYAARPEGVTNDRYGGVHADYLTSEYQHMGDSETSGKPWENCRGVGLSFGYNRAEGEH QYLSGAAAVRHLVDVVARGGRLLLNVGPRADGTIPREQRECLEGMGAWNDLYGEELRGVR ALSAKDFEAVTAQSAGDEAWVRLLVHEDHVAVVANASVTQVSGLPSGFDYSRSTILTPGA ACSWDGQSLTLQAGEQPPTDARGDALPLVITAPRA >gi|292821859|gb|ACYT02000011.1| GENE 11 14330 - 14566 70 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189198|ref|ZP_06607922.1| ## NR: gi|293189198|ref|ZP_06607922.1| regulatory protein, LysR:LysR, substrate-binding [Actinomyces odontolyticus F0309] # 1 78 1 78 78 145 100.0 1e-33 MSSFARFLNFPRESYGGGSDSFASTPIALQRRGTQHSACDVILACAWAGRRLAAHIPLRV FEPLVVATTIVATVPLLV >gi|292821859|gb|ACYT02000011.1| GENE 12 14563 - 15489 1559 308 aa, chain - ## HITS:1 COG:STM4424 KEGG:ns NR:ns ## COG: STM4424 COG1082 # Protein_GI_number: 16767670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Salmonella typhimurium LT2 # 12 301 8 298 306 322 54.0 4e-88 MTHVYDPATAINDPNGITWGMHPIAWRNDDIPEVGEWNTIDIMFDDLAEAGFAGTEVAGW YPSKEETKEKADAAGLKIVAQWFSSFIVRDGVEAVIPDFRTTCEYLQFLGATRVVVSEQT GSVQGIRDICIFENKPVLKNEEWPVLAEGLNKLGEIAHEYGLDLVYHHHLGTVVQTKDET LRMLELTDPEKVSLLFDTGHAFVGDGDVMGLLRGAIDRIKHVHFKDVRPAKMEESRQAKR SFLDSFLAGMFTVPGDGAIDFTEPYAFLVEHGYKGWILVEAEQDPKIAPPLEYAHIARDY VLGTLLGQ >gi|292821859|gb|ACYT02000011.1| GENE 13 15621 - 16613 1560 330 aa, chain - ## HITS:1 COG:Cgl3002 KEGG:ns NR:ns ## COG: Cgl3002 COG0673 # Protein_GI_number: 19554252 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Corynebacterium glutamicum # 2 328 3 330 335 325 52.0 7e-89 MLNIAVIGAGRIGHVHAKTIAAHPGATLALVADPFGDAAQKLAEVYGARHTTDVDSVFTD EGVDAVVIGSPTPLHIPHLLAVAKAGKAVLCEKPIALDMKDVEAARDELGAVSVPVMFGF NRRFDPSFAAVHAQLEEGTIGDLENLLIISRDPSAPPAEYVKVSGGIFRDMTIHDFDMAR FFLGDIIEVHAFGQNFNEEIREAGDFDAAVVTLKNAAGVVATIVNNRKCSAGYDQRLEAQ GSTGTLNADNIRATTVRLSNAEVTDAAEPYLDFFLQRYADAYRLELTAFIDAVVTGTKPT PSIDDAIEALRLAEAATESAKTGKPVSLAW >gi|292821859|gb|ACYT02000011.1| GENE 14 16709 - 17785 1758 358 aa, chain - ## HITS:1 COG:all4020 KEGG:ns NR:ns ## COG: all4020 COG0176 # Protein_GI_number: 17231512 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Nostoc sp. PCC 7120 # 91 276 89 305 381 95 29.0 1e-19 MSIEYTPGPLLDAARNTPTALWNDSSDPSELAQSLSFGGVGATCNPTIAYTCINQRRDVW LPRIAELAKEMPDATESEIGWQVVRELSLEAAKLLEPIFEAENGRNGRLSMQTDPRLARS AKALADQAEEFHNLAKNIIVKIPATSVGVEAIEEATYRGVSVNVTVSFSVAQAVTTGEAI ERGLKRREAEGKDTSQMGPVVTLMVGRLDDWIKEVAKRDRLFIDPGHLEWCGVAAFKRAY QEFQKRGLRARMLSAAFRNVMHWSEFVGGDVVVSPPFQWAKLINDSDYKVEERMDIPVRE DIMKTLLSIPEFVRAYEPDGMTPEEFDTFGGTVQTLRGFLQADADLDALVRDVIMPAP >gi|292821859|gb|ACYT02000011.1| GENE 15 17896 - 18855 1052 319 aa, chain - ## HITS:1 COG:Cgl0157 KEGG:ns NR:ns ## COG: Cgl0157 COG2188 # Protein_GI_number: 19551407 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 83 319 16 253 253 201 45.0 1e-51 MASPSSPLGWPVNLSFQGCTINRQSSNFVYTICNSASLSPFTSTLILCNPKYFAQLSRHT RRFDMSKASPTSGNTPYVPDITLDRSSPVPLYFQISEPIAQLINSGALPADTRLEDELSM AARLHVSRPTARQALQRLVDRGLLTRRRGVGTIVSPRHVHRPMELTSLMRDLVNAGHKVH TTIQRYEARPANAQEADVLKITEGTLIVHIERTRFANDEPIAVLTNFIPTDIAPTMQELE SASLYDLMRERGVTLASARQVIGARSATTKEAKLLSEHRGAALLTTQRTTYDPSGRIVEY GNHIYRASRYSFETSLFAQ >gi|292821859|gb|ACYT02000011.1| GENE 16 18854 - 19819 1160 321 aa, chain + ## HITS:1 COG:Cgl0158 KEGG:ns NR:ns ## COG: Cgl0158 COG0524 # Protein_GI_number: 19551408 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Corynebacterium glutamicum # 9 311 9 310 318 319 55.0 4e-87 MSLERRYVDILTMGRSGIDIFPLQVGAHLEDVETFGKFLGGSPTNVAVAAARLGHRAGVI TGVGDDPFGRFVTRELERLGVSSDHVVTVRDFHTPVTFAELFPPDSFPLYFYREPSAPDL ELGEDQVDWDAVERAGIFWFTVTGLSRDSSFGLHLRALDHRDRSSGVTILDLDYRSNLWS GMAQARSRVAAVLSRVDVAVGNRQECEMAVGVSDPEGAADALLERGVRLAIVKQGPKGTL AKTADERVWVDAWDVDVVNGLGAGDAFGGALIHGLVEGWDLERTIRYASAAGAYVCLHIE CSTAMPTLEQLSTFVETGVLP >gi|292821859|gb|ACYT02000011.1| GENE 17 19893 - 20765 1264 290 aa, chain + ## HITS:1 COG:Cgl0161 KEGG:ns NR:ns ## COG: Cgl0161 COG3718 # Protein_GI_number: 19551411 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Corynebacterium glutamicum # 22 287 19 288 296 220 45.0 2e-57 MTLPDIYVPAGSSGHGNFTVDIDPQRAGWAFSGLRVLVLEAGASQVVETGEAELLVLPLA GGATVEVDGQTYELEGRRGVFSGVTDYLYVGRGKSLTITSADGGRFAFPSAIASRDIPAA YYPKSQVRVDLRGAGDCSRQVNNYSLAVEGVTTSHLLACEVITPGGNWSSYPAHKHEQDS EDERELEEIYYFEIEDGPEGSKGFGLHRTYGSPGRPIDLCCEVHDGDVALVPHGYHGPCV AAPGYDMYYLNVMAGPNEDLVWLAPDDPAHHWIRATWENQEVDPRLPMNK >gi|292821859|gb|ACYT02000011.1| GENE 18 20788 - 22695 2897 635 aa, chain + ## HITS:1 COG:Cgl0162 KEGG:ns NR:ns ## COG: Cgl0162 COG3962 # Protein_GI_number: 19551412 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Corynebacterium glutamicum # 9 635 4 636 637 640 53.0 0 MSNEAYKGTVRLTVAQAIIRFLSNQYTERDGVERRLIAGAFGIFGHGNVAGIGQAILQNE IAPAEGENPMPYIMPRNEQGAIHAAAAFAKTTNRLQTWMTTASIGPGSLNMVTGAALATT NRLPVLIFPSDQFATRIPDPVLQQLEDPTSLDVTVNDAFRPVSRFFDRINRPEQLIPSLL AGMRVLTDPSETGAVTIALPQDVQAEAYDWPVEFFAKRVWHVRRPPVERAALERAVAKIR AAKRPLIIAGGGTIYSEASEELRTFAAATGIPVADTQAGKGAINCDHPCSVGGVGSTGGD SGNHLADKADLIIGVGTRYSDFTTASKTQFKNPDVSFVNINITPFDAAKQSAEMVVADAR EALVALTEDLADYRVDESYTAEIAAEREAWAAKVERCYHVGNAPLPAQTEVFGALNELMG DEDVVINAAGSMPGDLQALWQAKTPVQYHVEYAFSCMGYEVPAAMGVKLARPQSEVVSIV GDGTYQMLPMELATVAQEGIKVIYVLLQNYGFASIGALSESRGSQRFGTKYRQRGTGSHL EDTDTIAGVDIAANARSWGIDVLEVHTIEEFKEAYKAAAASDRATMIHIETDLMGPNPPG SSWWDVAISEVSVLESTQRAYEDYQNDRKPQRHYL >gi|292821859|gb|ACYT02000011.1| GENE 19 22977 - 24479 2294 500 aa, chain + ## HITS:1 COG:STM4421 KEGG:ns NR:ns ## COG: STM4421 COG1012 # Protein_GI_number: 16767667 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 2 500 3 501 501 473 47.0 1e-133 MTINLWVNGEEYVAHSEKTIGVENPATGKVVDQLALADKHCLDHVVEIAREAQKEWGRTA LAKRVDIMFKFRQLVIEHQDEIADAIVREGGKTHGDALGEIARGRETIDFACGINAALKG EFTDQASTGVDVHTLRQPVGVVAGICPFNFPAMVPMWMHPVALATGNAFILKVASVVPSA SLIIARLYKEAGLPDGLFNVIAGDRHLVTDILTHPGIDAISFVGSTPVAHIVQDTGVAHG KRVQALGGANNHAIVMPDADIEFAAQHISAGAFGAAGQRCMALPVIVTVGGVEEKLVPAI KARAEKIVVGPGTDPASEMGPVITRSSQERITKWIDEAEAKGANIVLDGRGYRPEGEEYA DGFWLAPTIIDGVDRNLSVYCEEVFGPVLVVVHADTYEEAIEIVNSSEFGNGSAIFTSDG DTARHFVVDVEAGMVGVNVPIPVPVAYYSFGGWKESLLGDTHIHGPEGVRFYTKAKVVTT RWPKRGEKVGYVGMNFPTNG >gi|292821859|gb|ACYT02000011.1| GENE 20 24734 - 26350 2011 538 aa, chain + ## HITS:1 COG:BS_yfiG KEGG:ns NR:ns ## COG: BS_yfiG COG0477 # Protein_GI_number: 16077893 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 31 535 21 465 482 310 37.0 5e-84 MAHTPTIDDYTPDRVRELVEKTPASGAKRSLGAIAVIATLGSLLFGYDTGVVAGALPYMY MPGGAGGLNMTTFEEGWVGGLLCIGAAAGAFFGGRLSDRFGRRHNITLLAIIFLFGAIGC AIAPNIWVLYLARIILGFAVGGASATVPVFLSETAPKRLRGFLVATDQMMIVFGQFLAFS MNAVIAHMQGGPTVTLTGDAVDVSGHVLGHAGTSVAWETVQAAVNIADVAGTGNGLTWRY MLVLCSLPAIALWIGIRTVPESSRWYAANLRIVEAIGSLKRARDEKKDDVAGEINEMLDI QRAESAQEKWSLSQILTVKWARKLLSIGIVLGIADQLTGINTAMYYTPKILNAAGVPMED AITLNVVSGGISAIGSAVGLWLVARFARRHVGMYQELGITISLAALSAVFAVFISPYLDG EGNISGAPTFAPWLVLGIVCIFVFIKQSGTVSWVLVSEIYPAAVRGTALGIAVGTLWLAN ALVAVVFPPLMATVGGAGTYAIFAAINFLSFLFYWKVVPETKFHSLEELELKFQKDYS >gi|292821859|gb|ACYT02000011.1| GENE 21 26433 - 26699 147 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTPQQGSISLDSTAGWLWRGVHECRCSPRNSGSAHPDNSLAYPDQDNLSACVRHGTRYS EMHLVGHRRSWVWPMRDQDAGIKLSLYA Prediction of potential genes in microbial genomes Time: Tue May 17 05:54:26 2011 Seq name: gi|292821672|gb|ACYT02000012.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.2, whole genome shotgun sequence Length of sequence - 196137 bp Number of predicted genes - 170, with homology - 164 Number of transcription units - 101, operones - 33 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 2363 1352 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Prom 2393 - 2452 3.4 2 2 Tu 1 . + CDS 2516 - 2767 283 ## HMPREF0573_10011 WhiB family regulatory protein + Term 2799 - 2853 9.1 - Term 2794 - 2834 7.3 3 3 Tu 1 . - CDS 2875 - 4335 1623 ## COG3920 Signal transduction histidine kinase 4 4 Op 1 . + CDS 4385 - 4915 581 ## Krad_3798 hypothetical protein + Term 4941 - 4987 11.3 5 4 Op 2 . + CDS 5001 - 5426 669 ## COG1765 Predicted redox protein, regulator of disulfide bond formation 6 4 Op 3 16/0.000 + CDS 5428 - 6231 1054 ## COG0207 Thymidylate synthase 7 4 Op 4 . + CDS 6339 - 6761 482 ## COG0262 Dihydrofolate reductase + Term 6793 - 6827 9.7 8 5 Op 1 . + CDS 6834 - 8171 1442 ## COG0477 Permeases of the major facilitator superfamily 9 5 Op 2 . + CDS 8260 - 9669 2232 ## COG0114 Fumarase + Term 9699 - 9744 11.0 10 6 Tu 1 . - CDS 9739 - 10539 989 ## COG0730 Predicted permeases 11 7 Tu 1 . + CDS 10670 - 11221 606 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 12 8 Tu 1 . + CDS 11442 - 11903 377 ## gi|293189221|ref|ZP_06607944.1| putative protein CrcB-like protein - Term 11949 - 11996 11.5 13 9 Tu 1 . - CDS 12001 - 12315 373 ## COG3070 Regulator of competence-specific genes 14 10 Tu 1 . - CDS 12768 - 14042 783 ## ckrop_0313 hypothetical protein 15 11 Tu 1 . - CDS 14192 - 17245 3640 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 16 12 Tu 1 . - CDS 17543 - 17740 56 ## 17 13 Tu 1 . + CDS 17727 - 17876 69 ## 18 14 Tu 1 . + CDS 18024 - 18206 108 ## gi|293189227|ref|ZP_06607950.1| hypothetical protein HMPREF0970_00261 + Term 18380 - 18404 -0.3 19 15 Tu 1 . + CDS 18455 - 18931 412 ## COG3600 Uncharacterized phage-associated protein 20 16 Tu 1 . + CDS 19407 - 19634 138 ## gi|154507564|ref|ZP_02043206.1| hypothetical protein ACTODO_00043 + Term 19641 - 19685 15.2 21 17 Op 1 27/0.000 - CDS 19678 - 20865 841 ## COG0732 Restriction endonuclease S subunits 22 17 Op 2 . - CDS 20862 - 22442 1680 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 22690 - 22749 2.9 + Prom 22792 - 22851 2.1 23 18 Tu 1 . + CDS 22874 - 23749 1178 ## Coch_0929 hypothetical protein 24 19 Tu 1 . + CDS 23999 - 24505 530 ## gi|293189234|ref|ZP_06607957.1| putative surface-associated protein CshA + Term 24567 - 24605 3.0 25 20 Tu 1 . - CDS 24427 - 24720 85 ## - Term 24774 - 24828 16.2 26 21 Op 1 . - CDS 24844 - 26949 1523 ## Tbis_1636 hypothetical protein - Prom 26987 - 27046 2.7 - Term 27054 - 27096 4.9 27 21 Op 2 . - CDS 27144 - 28064 623 ## gi|154507567|ref|ZP_02043209.1| hypothetical protein ACTODO_00046 28 22 Tu 1 . - CDS 28228 - 28578 623 ## gi|293189238|ref|ZP_06607961.1| conserved hypothetical protein 29 23 Tu 1 . - CDS 28872 - 29504 772 ## gi|293189239|ref|ZP_06607962.1| putative 3,4-dioxygenase beta subunit - Term 29560 - 29606 2.1 30 24 Tu 1 . - CDS 29620 - 31122 2013 ## COG0833 Amino acid transporters + Prom 31144 - 31203 2.3 31 25 Tu 1 . + CDS 31340 - 32032 877 ## COG1285 Uncharacterized membrane protein 32 26 Tu 1 . - CDS 32105 - 33973 2381 ## gi|293189243|ref|ZP_06607966.1| conserved hypothetical protein - Prom 34016 - 34075 2.2 - TRNA 34121 - 34197 89.8 # Met CAT 0 0 - Term 34078 - 34115 9.2 33 27 Tu 1 . - CDS 34311 - 35078 693 ## gi|293189244|ref|ZP_06607967.1| male-specific opa-containing protein 34 28 Tu 1 . - CDS 35279 - 38437 3953 ## COG1615 Uncharacterized conserved protein + Prom 38354 - 38413 1.9 35 29 Tu 1 . + CDS 38488 - 39057 653 ## Bcav_2886 hypothetical protein + Term 39069 - 39122 20.1 - Term 39122 - 39160 1.5 36 30 Tu 1 . - CDS 39163 - 40359 262 ## PROTEIN SUPPORTED gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 37 31 Tu 1 . + CDS 40481 - 41947 1894 ## COG5282 Uncharacterized conserved protein 38 32 Tu 1 . + CDS 42058 - 42936 739 ## gi|293189250|ref|ZP_06607973.1| conserved hypothetical protein + Term 43034 - 43062 -0.6 39 33 Op 1 1/0.357 - CDS 42938 - 44977 2273 ## COG0210 Superfamily I DNA and RNA helicases 40 33 Op 2 . - CDS 44980 - 45915 753 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 41 34 Op 1 8/0.000 + CDS 45952 - 46719 1013 ## COG0689 RNase PH 42 34 Op 2 . + CDS 46716 - 47330 392 ## PROTEIN SUPPORTED gi|157155704|ref|YP_001464307.1| putative deoxyribonucleotide triphosphate pyrophosphatase + Term 47352 - 47389 8.5 - Term 47338 - 47377 5.1 43 35 Tu 1 . - CDS 47406 - 47528 122 ## - Prom 47635 - 47694 3.1 44 36 Tu 1 . - CDS 47780 - 48112 444 ## gi|293189256|ref|ZP_06607979.1| conserved hypothetical protein - Prom 48160 - 48219 2.5 + Prom 48113 - 48172 3.2 45 37 Tu 1 . + CDS 48199 - 49116 998 ## COG0583 Transcriptional regulator 46 38 Op 1 4/0.107 - CDS 49162 - 49959 796 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 47 38 Op 2 . - CDS 49956 - 50786 896 ## COG0796 Glutamate racemase 48 38 Op 3 . - CDS 50803 - 51375 333 ## Arch_1114 domain of unknown function DUF2017 49 38 Op 4 . - CDS 51380 - 51667 372 ## COG2127 Uncharacterized conserved protein 50 39 Tu 1 . + CDS 51749 - 53092 1806 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 53115 - 53169 15.8 - Term 53103 - 53155 7.0 51 40 Op 1 . - CDS 53198 - 54940 2238 ## COG1061 DNA or RNA helicases of superfamily II 52 40 Op 2 . - CDS 54937 - 55269 570 ## HMPREF0573_10096 hypothetical protein - Term 55340 - 55381 13.2 53 41 Op 1 . - CDS 55404 - 56177 1246 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 54 41 Op 2 1/0.357 - CDS 56253 - 56912 523 ## COG3142 Uncharacterized protein involved in copper resistance 55 41 Op 3 . - CDS 56930 - 57862 373 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 56 41 Op 4 . - CDS 57859 - 59316 1996 ## COG5476 Uncharacterized conserved protein 57 41 Op 5 . - CDS 59313 - 60461 900 ## COG1940 Transcriptional regulator/sugar kinase - Prom 60596 - 60655 4.4 + Prom 60535 - 60594 3.7 58 42 Op 1 38/0.000 + CDS 60735 - 62522 2951 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 62544 - 62596 19.5 59 42 Op 2 49/0.000 + CDS 62602 - 63561 1503 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 60 42 Op 3 13/0.000 + CDS 63558 - 64457 1220 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 61 42 Op 4 . + CDS 64468 - 66519 859 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 66545 - 66594 16.7 62 43 Tu 1 . - CDS 67316 - 67597 552 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 67705 - 67764 2.9 - Term 68019 - 68062 12.0 63 44 Op 1 11/0.000 - CDS 68086 - 69261 1923 ## COG4214 ABC-type xylose transport system, permease component 64 44 Op 2 . - CDS 69258 - 70805 2349 ## COG1129 ABC-type sugar transport system, ATPase component 65 45 Tu 1 . + CDS 70804 - 70914 62 ## + Term 71100 - 71142 0.8 66 46 Tu 1 . - CDS 70869 - 72053 1877 ## COG4213 ABC-type xylose transport system, periplasmic component - Prom 72203 - 72262 3.9 - Term 72169 - 72221 1.6 67 47 Op 1 5/0.000 - CDS 72293 - 73801 1732 ## COG2160 L-arabinose isomerase 68 47 Op 2 1/0.357 - CDS 73821 - 74534 677 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - Prom 74565 - 74624 2.2 - Term 74573 - 74609 -0.2 69 47 Op 3 . - CDS 74627 - 75640 696 ## COG1609 Transcriptional regulators - Prom 75671 - 75730 1.9 70 48 Tu 1 . + CDS 75806 - 77746 2558 ## COG2233 Xanthine/uracil permeases + Term 77775 - 77825 15.4 - Term 78530 - 78580 18.6 71 49 Tu 1 . - CDS 78611 - 82588 5108 ## COG1404 Subtilisin-like serine proteases - Term 82958 - 83010 17.4 72 50 Tu 1 . - CDS 83032 - 85713 2983 ## COG3291 FOG: PKD repeat - Term 86125 - 86169 16.1 73 51 Tu 1 . - CDS 86187 - 92855 8496 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Prom 92915 - 92974 2.6 74 52 Tu 1 . - CDS 93162 - 93479 667 ## COG0393 Uncharacterized conserved protein 75 53 Tu 1 . - CDS 93838 - 95253 759 ## jk1246 hypothetical protein - Prom 95463 - 95522 2.3 + Prom 95403 - 95462 3.5 76 54 Tu 1 . + CDS 95502 - 96287 589 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Term 96108 - 96150 5.7 77 55 Tu 1 . - CDS 96271 - 96873 699 ## COG0500 SAM-dependent methyltransferases 78 56 Tu 1 . - CDS 97032 - 97397 388 ## HMPREF0573_11240 hypothetical protein 79 57 Op 1 . - CDS 97521 - 97700 281 ## Jden_0156 hypothetical protein 80 57 Op 2 . - CDS 97793 - 98098 280 ## Xcel_1970 protein of unknown function DUF156 81 57 Op 3 . - CDS 98108 - 99823 2062 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 82 58 Tu 1 . - CDS 100025 - 101257 548 ## COG3328 Transposase and inactivated derivatives - Prom 101471 - 101530 3.1 83 59 Tu 1 . + CDS 101317 - 101742 125 ## 84 60 Op 1 1/0.357 - CDS 102118 - 104322 2497 ## COG1511 Predicted membrane protein 85 60 Op 2 . - CDS 104319 - 106964 2827 ## COG1511 Predicted membrane protein - Term 106967 - 107010 -0.8 86 60 Op 3 . - CDS 107028 - 107555 1011 ## COG0691 tmRNA-binding protein - Term 107588 - 107625 7.6 87 61 Op 1 2/0.143 - CDS 107642 - 108916 1763 ## COG0739 Membrane proteins related to metalloendopeptidases 88 61 Op 2 28/0.000 - CDS 108922 - 109836 1368 ## COG2177 Cell division protein 89 61 Op 3 4/0.107 - CDS 109842 - 110531 290 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 90 62 Tu 1 . - CDS 110724 - 111845 1513 ## COG1186 Protein chain release factor B 91 63 Op 1 . - CDS 111982 - 113343 2214 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 92 63 Op 2 . - CDS 113416 - 113859 135 ## gi|293189310|ref|ZP_06608033.1| conserved hypothetical protein 93 63 Op 3 . - CDS 113852 - 114250 270 ## Arth_2668 hypothetical protein 94 63 Op 4 . - CDS 114247 - 114636 215 ## Arth_2669 TadE family protein 95 63 Op 5 . - CDS 114608 - 114778 323 ## gi|154507635|ref|ZP_02043277.1| hypothetical protein ACTODO_00116 96 63 Op 6 . - CDS 114794 - 115690 991 ## COG2064 Flp pilus assembly protein TadC 97 63 Op 7 . - CDS 115690 - 116553 474 ## Franean1_5825 type II secretion system protein 98 63 Op 8 . - CDS 116550 - 117764 955 ## COG4962 Flp pilus assembly protein, ATPase CpaF - Prom 117796 - 117855 2.4 99 64 Tu 1 . + CDS 117908 - 119089 1518 ## Bcav_2900 aminoglycoside phosphotransferase + Term 119146 - 119194 7.4 - Term 119132 - 119179 19.4 100 65 Op 1 . - CDS 119211 - 119603 527 ## HMPREF0573_11069 hypothetical protein 101 65 Op 2 1/0.357 - CDS 119600 - 120355 772 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 102 65 Op 3 . - CDS 120356 - 121279 1401 ## COG1209 dTDP-glucose pyrophosphorylase + Prom 121250 - 121309 2.9 103 66 Tu 1 . + CDS 121423 - 122850 2127 ## COG1091 dTDP-4-dehydrorhamnose reductase - Term 123331 - 123384 21.4 104 67 Op 1 . - CDS 123402 - 125450 2807 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Prom 125478 - 125537 4.8 105 67 Op 2 1/0.357 - CDS 125664 - 126845 1226 ## COG0438 Glycosyltransferase 106 67 Op 3 . - CDS 126839 - 128143 1617 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase 107 68 Tu 1 . + CDS 128136 - 129332 945 ## ELI_13320 glycosyl transferase, group 1 family protein 108 69 Tu 1 . - CDS 129354 - 130637 1340 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 109 70 Tu 1 . + CDS 130728 - 131831 733 ## COG0438 Glycosyltransferase + Term 132042 - 132089 -0.9 - Term 131715 - 131739 -1.0 110 71 Op 1 3/0.107 - CDS 131841 - 132824 1057 ## COG0673 Predicted dehydrogenases and related proteins 111 71 Op 2 9/0.000 - CDS 132826 - 133926 1275 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 112 71 Op 3 . - CDS 133923 - 134588 548 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 134655 - 134714 2.6 113 72 Op 1 . + CDS 134685 - 135383 382 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 114 72 Op 2 . + CDS 135380 - 135850 384 ## gi|293189333|ref|ZP_06608056.1| putative membrane protein 115 72 Op 3 1/0.357 + CDS 135840 - 137150 1824 ## COG1316 Transcriptional regulator 116 72 Op 4 . + CDS 137147 - 138517 1316 ## COG1316 Transcriptional regulator + Term 138558 - 138607 13.0 - Term 138541 - 138598 18.0 117 73 Op 1 . - CDS 138619 - 139614 1421 ## COG1087 UDP-glucose 4-epimerase 118 73 Op 2 29/0.000 - CDS 139678 - 140232 783 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Term 140244 - 140282 2.1 119 73 Op 3 . - CDS 140300 - 141454 1262 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 120 73 Op 4 40/0.000 - CDS 141488 - 142816 1197 ## COG0642 Signal transduction histidine kinase 121 73 Op 5 . - CDS 142841 - 143518 826 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 122 73 Op 6 . - CDS 143612 - 144646 829 ## COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - Prom 144744 - 144803 2.2 + Prom 144712 - 144771 2.9 123 74 Op 1 . + CDS 144873 - 145580 655 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 124 74 Op 2 . + CDS 145625 - 146581 1243 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 125 75 Op 1 4/0.107 - CDS 146553 - 147743 1223 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 126 75 Op 2 . - CDS 147763 - 148104 501 ## COG1146 Ferredoxin 127 76 Tu 1 . + CDS 148157 - 148483 205 ## gi|293189346|ref|ZP_06608069.1| 2-hydroxymuconic semialdehyde dehydrogenase + Term 148716 - 148766 1.4 128 77 Tu 1 . - CDS 148506 - 150425 2775 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 150520 - 150579 1.8 129 78 Op 1 . + CDS 150441 - 150671 142 ## gi|293189348|ref|ZP_06608071.1| conserved hypothetical protein 130 78 Op 2 . + CDS 150664 - 151518 876 ## COG0676 Uncharacterized enzymes related to aldose 1-epimerase 131 78 Op 3 . + CDS 151566 - 152144 716 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 132 78 Op 4 . + CDS 152141 - 153031 313 ## gi|293189351|ref|ZP_06608074.1| hypothetical protein HMPREF0970_00387 133 79 Tu 1 . - CDS 153092 - 154585 1861 ## COG0174 Glutamine synthetase - Prom 154624 - 154683 2.0 134 80 Tu 1 . - CDS 154798 - 155268 -92 ## gi|293189353|ref|ZP_06608076.1| penicillin-binding protein - Term 155548 - 155590 12.2 135 81 Op 1 . - CDS 155678 - 156109 362 ## COG0789 Predicted transcriptional regulators - Term 156113 - 156144 1.1 136 81 Op 2 . - CDS 156257 - 156883 312 ## smi_0862 acetyltransferase - Prom 157041 - 157100 2.7 + Prom 157047 - 157106 4.6 137 82 Tu 1 . + CDS 157126 - 159648 2078 ## Cthe_3078 cellulosome anchoring protein, cohesin region - Term 159501 - 159535 2.5 138 83 Op 1 . - CDS 159667 - 160755 844 ## SCAB_16151 hypothetical protein 139 83 Op 2 . - CDS 160821 - 161879 1033 ## SCAB_16151 hypothetical protein 140 84 Tu 1 . + CDS 162019 - 162837 1035 ## COG0457 FOG: TPR repeat + Term 162856 - 162899 12.9 - Term 162842 - 162886 9.3 141 85 Tu 1 . - CDS 162928 - 164421 1839 ## COG0366 Glycosidases 142 86 Tu 1 . - CDS 164550 - 165551 1000 ## SCO6631 hypothetical protein 143 87 Tu 1 . + CDS 165695 - 166567 806 ## COG2510 Predicted membrane protein + Term 166653 - 166696 4.2 144 88 Op 1 . - CDS 166588 - 167511 676 ## Xcel_1535 hypothetical protein 145 88 Op 2 . - CDS 167504 - 168301 543 ## gi|293189367|ref|ZP_06608090.1| hypothetical protein HMPREF0970_00404 - Term 168396 - 168426 -0.5 146 89 Op 1 5/0.000 - CDS 168508 - 169551 1157 ## COG4268 McrBC 5-methylcytosine restriction system component 147 89 Op 2 . - CDS 169548 - 171719 1969 ## COG1401 GTPase subunit of restriction endonuclease - Term 171772 - 171811 10.3 148 90 Tu 1 . - CDS 171836 - 172144 263 ## COG3093 Plasmid maintenance system antidote protein - Term 172866 - 172900 -0.7 149 91 Tu 1 . - CDS 173108 - 176083 2685 ## DIP0278 putative surface-anchored membrane protein - Prom 176167 - 176226 2.8 - Term 176229 - 176274 1.9 150 92 Op 1 . - CDS 176404 - 176571 62 ## gi|296935093|ref|ZP_06906312.1| tetratricopeptide repeat protein 151 92 Op 2 4/0.107 - CDS 176568 - 177437 634 ## COG0286 Type I restriction-modification system methyltransferase subunit 152 92 Op 3 . - CDS 177470 - 177925 599 ## COG0286 Type I restriction-modification system methyltransferase subunit 153 92 Op 4 . - CDS 178018 - 179100 1776 ## COG0012 Predicted GTPase, probable translation factor 154 92 Op 5 . - CDS 179138 - 180205 1423 ## COG0761 Penicillin tolerance protein 155 93 Op 1 14/0.000 + CDS 180494 - 181663 1143 ## COG1570 Exonuclease VII, large subunit 156 93 Op 2 . + CDS 181714 - 181944 366 ## COG1722 Exonuclease VII small subunit 157 93 Op 3 . + CDS 181988 - 182923 1215 ## COG0524 Sugar kinases, ribokinase family 158 94 Tu 1 . - CDS 183006 - 183767 1079 ## COG0020 Undecaprenyl pyrophosphate synthase 159 95 Tu 1 . + CDS 183955 - 184638 988 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 184645 - 184688 2.2 160 96 Tu 1 . + CDS 184754 - 185233 754 ## COG0782 Transcription elongation factor + Term 185338 - 185392 2.9 161 97 Tu 1 . - CDS 185345 - 186829 1473 ## COG0628 Predicted permease 162 98 Tu 1 . + CDS 186929 - 187555 660 ## COG0225 Peptide methionine sulfoxide reductase - Term 187561 - 187612 18.0 163 99 Op 1 . - CDS 187623 - 188021 745 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 164 99 Op 2 . - CDS 188055 - 189035 1388 ## COG4760 Predicted membrane protein - Prom 189217 - 189276 2.0 - TRNA 189191 - 189264 69.0 # Leu TAA 0 0 165 100 Op 1 4/0.107 - CDS 189317 - 190285 1156 ## COG0248 Exopolyphosphatase 166 100 Op 2 . - CDS 190347 - 190856 514 ## COG1507 Uncharacterized conserved protein 167 100 Op 3 . - CDS 190853 - 191614 541 ## Bcav_1019 septum formation initiator - Term 191655 - 191698 15.2 168 101 Op 1 . - CDS 191721 - 193061 2097 ## COG0148 Enolase 169 101 Op 2 . - CDS 193181 - 193771 569 ## gi|154507722|ref|ZP_02043364.1| hypothetical protein ACTODO_00204 170 101 Op 3 . - CDS 193832 - 196135 2770 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) Predicted protein(s) >gi|292821672|gb|ACYT02000012.1| GENE 1 6 - 2363 1352 785 aa, chain + ## HITS:1 COG:CAC0408_2 KEGG:ns NR:ns ## COG: CAC0408_2 COG1674 # Protein_GI_number: 15893699 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 131 364 433 663 1312 157 38.0 7e-38 MRLAASADAREPGECEAIGIVGAHASQCALWCAGQIAAQLGGARVWWNSAAPVLIGNAGV DIHVSDRDSCPHCTRDAARPTLHVGYSPSLSLLPAWCAQVCVTDDAPVSSHWWWTVTRAD AQDSLPARLDWDPSSARGHGGGLSVRIGLGAEGPIDLDLVADGPHALVAGCTGSGKSEAL LGWLAAIAHCYSPEQVRFILIDYKGGATFARLEALPHTQALLTDLDAGATTRALEGIASI LQRREESLRALGFPDLAAWESAHEEDPVSVSAPPPRLIVAIDEFRVLAQAHPDSMEVLLR LAAQGRSLGLHLIAATQRPSGAVSAQMRANMDIRLCLRCVSASDSTDIIGDGRAASLPRI PGRAVLSDVGTIQLTYLADIASVVERCNATWPRTTTEPLWAPPLPEALNWEDVDDAAQRS VDHTPEGNAAHDGLPGGTAVSLGLAEGIEHHVPIVWDGGSIQIQTSAHEAHLSAQWALSL ATRIAHGTRRPLHVIGEDAVGGVASQLPADAPSAIDLLEGICDHGPTVLALTDTPQLRSY LSQALAAPQAEALLTSLLAKARRAGVVIVAAFAGRFTPSSAAMGAFSTRIVRARDADEAV HAGIAPGELRALGEGQALVVRPGERPCLATIPRRGIHLQHHRPADGNDWRIPSPSQVTAL VRNTRSPILIGPTYSAPAWEHALPWIIIGRRDDARVIEAIHAHLGWETPKISDVIPEEAW TRITRWDEHRVLALNPTHNVTRALIQHSHTPPLALTARRWDMTCGLISEGDTVSTAQLTA RSVNT >gi|292821672|gb|ACYT02000012.1| GENE 2 2516 - 2767 283 83 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10011 NR:ns ## KEGG: HMPREF0573_10011 # Name: not_defined # Def: WhiB family regulatory protein # Organism: M.curtisii # Pathway: not_defined # 1 72 1 72 87 120 76.0 2e-26 MDWRSKAACLTVDPELFFPIGNTGPAIRQVAEAKAVCRECEVVGVCLQWAIDNNQDSGVW GGMSEEERRSLKRRAARARHAGC >gi|292821672|gb|ACYT02000012.1| GENE 3 2875 - 4335 1623 486 aa, chain - ## HITS:1 COG:ML0803 KEGG:ns NR:ns ## COG: ML0803 COG3920 # Protein_GI_number: 15827350 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium leprae # 11 479 9 488 500 264 37.0 3e-70 MRSLMQLAEEASSTPLSEQDIDWLHLLLADWQVLADLAAADLVLWLPADDGRFIAAAHCR PATSTTVHVDDIIGLHLPAAREIDLRRALQTGQVVRSPAARWAGTYSMMETCVPVCHDGR IIAVVTREANLSSPRLSLGFEGWTVAAADTLCQMMARGEYPYDSTPQVTSHGVPRVLDGA VLLDAEGRVQHATPNAVSCLRRLGIRTHVTGKVLAQEITEVIGDGTLIEESMAVVVMGRA SWRVEIAARASTVSMRALPLVNGRKRLGAVILTRDVSEVHRHEQELMTKDATIREIHHRV KNNLQTVSALLRLQSRRSSEEAVKVALAEAERRVQAIATVHAALSQNVDESVDFDEVART IVRMAGAIASTDHAVEVITTGSFGTIQADQAQALATVLNELVANSVEHGLADRDGLIEVR AEREGTSMTVTVADDGVGFVPGTPMSGLGTQIVHQMVRGELKGSIEWAPREGGGTLVTLH ANLDPA >gi|292821672|gb|ACYT02000012.1| GENE 4 4385 - 4915 581 176 aa, chain + ## HITS:1 COG:no KEGG:Krad_3798 NR:ns ## KEGG: Krad_3798 # Name: not_defined # Def: hypothetical protein # Organism: K.radiotolerans # Pathway: not_defined # 19 171 5 162 165 64 32.0 1e-09 MSAGTRFGAASFVRRTMQFTQSMSYPGTVDEVVTMYLTPSYLERRFGQFVVEGSSTVSVE GQRVSFAGTVRPELIPAAAARFVKSDLRIAFTEEWTTNEAGASSRTSVTVDGAPVSVEAT STLAGTEEGCVRVVTGNVSVRVPLLGGRIEKEAVAHLGRVVEREQALATQWLEEHR >gi|292821672|gb|ACYT02000012.1| GENE 5 5001 - 5426 669 141 aa, chain + ## HITS:1 COG:MT2992 KEGG:ns NR:ns ## COG: MT2992 COG1765 # Protein_GI_number: 15842468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Mycobacterium tuberculosis CDC1551 # 8 120 4 118 137 91 40.0 4e-19 MSDTPKSLYMQRTGVRQYVARNQDGAEIRIGHGPGLFSPGDLLKLALAGCNAMSSDARMA ARLGDDFEQFVGVSADYDQDNDRFTHVDVELVQDMSALSEEEIEDLKRRADAAIKRNCTI EHSVVDQALSASHTWTNERIN >gi|292821672|gb|ACYT02000012.1| GENE 6 5428 - 6231 1054 267 aa, chain + ## HITS:1 COG:Cgl0821 KEGG:ns NR:ns ## COG: Cgl0821 COG0207 # Protein_GI_number: 19552071 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Corynebacterium glutamicum # 8 267 7 266 266 427 77.0 1e-120 MSVVDRQYEDLLARIMREGTPKGDRTGTGTRSLFGAQLRYDLSKGFPLITTKRVHLKSVV GELLWFLSGSSNVSWLQDNGIRIWNEWADEDGELGPVYGVQWRSWNAGDGRHIDQISQVL ETLKTNPDSRRMVVSAWNVGDLPQMALEPCHAFFQLYVADGRLSLQLYQRSADMFLGVPF NIASYSLLTHMFAQQAGLEVGDFIWTGGDCHIYSNHTEQVTEQLSREPYPFPRLELAKAP SMFEYSFDDISVTDYRHHPTIKAPVAV >gi|292821672|gb|ACYT02000012.1| GENE 7 6339 - 6761 482 140 aa, chain + ## HITS:1 COG:BMEI0609 KEGG:ns NR:ns ## COG: BMEI0609 COG0262 # Protein_GI_number: 17986892 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Brucella melitensis # 1 113 40 145 172 89 44.0 2e-18 MGCPIIMGRRSWEALGRALPGRTNIVITRRPGYEAEGALVVSSVDEALRIAREETARTDA PYIWITGGAQLYAETLPLLDEAVVTDLELDVAASAPEGSTFVHAPALDPALWRRDEERSD AEWRERSGDARWKVSTWVQR >gi|292821672|gb|ACYT02000012.1| GENE 8 6834 - 8171 1442 445 aa, chain + ## HITS:1 COG:CC0751 KEGG:ns NR:ns ## COG: CC0751 COG0477 # Protein_GI_number: 16125004 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 28 418 44 407 450 86 28.0 8e-17 MPSSPLLTNPTLRALVAIALFTYTAQNMLNVSIAPLSRALDLPEWIVGAAVSLAAAAVTA LSQFWGRRSIAWGRRRVILLALFLALTAGTLFSAAVWARAAGYVGVFLAAGAIMAARGPF FGAAVAAIPPTGQALVAEVTPDEASRVRGTSAFSGAINLSVMIGSLVSSALGAWWIFGPV HATPIFVLIALAIALICLPRDGGSARPSRRLPRLSAEDTTPEKAAPASSTQRTEQESASE ATDTAALPPRVRWTDRRIAPWIASVFGIYFANGVVQITMGFLVQDRGGLEPAPAVSVTAL MLLANAAGAMLMQLIVVPRLGWSPRTLLRTGMTLALVALACLTIAPSLWALAVSTFAMGV ASGMASPGYSAGASLAVSAREQGGIAGVINATGAITWIVAPVSATALYGWMPLSPFLLAL SLVALSCACAWWLLHRAKSAARPLD >gi|292821672|gb|ACYT02000012.1| GENE 9 8260 - 9669 2232 469 aa, chain + ## HITS:1 COG:DR2627 KEGG:ns NR:ns ## COG: DR2627 COG0114 # Protein_GI_number: 15807607 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Deinococcus radiodurans # 4 463 3 463 464 669 74.0 0 MAQETRTETDSMGAVEVPANRYWGAQTERSLHNFDIGRNTFVWGRPMVRALGILKKAAAL ANAELGELPADIANYIAQAGDEVISGKLDDNFPLVVFQTGSGTQSNMNANEVISNRAIEI AGGTMGTKAPVHPNDHVNRGQSSNDTFPTAMHIAVVSELHDMYPRVRQLRDTLDKKAKEF EDVIMVGRTHLQDATPIRLGQVISGWVAQIDFALDGIEYADTRARELAIGGTAVGTGLNA HPKFGELTAKKISEETGIEFTQADNLFAALSAHDALVLVSGALRVLADALMKIANDVRWY ASGPRNGIGELIIPENEPGSSIMPGKVNPTQCEAMTMVATQVFGNDATVGFAGSQGNFQL NVFKPVMAWNVLESIRLLGDACVSFDTNCAYGIEPNYEKIQHNLDINLMQVTALNRHIGY DKASKIAKNAHHKGLSLRESALELGFLTAEEFDAWVVPADMTHPSAADE >gi|292821672|gb|ACYT02000012.1| GENE 10 9739 - 10539 989 266 aa, chain - ## HITS:1 COG:RSp0190 KEGG:ns NR:ns ## COG: RSp0190 COG0730 # Protein_GI_number: 17548411 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 17 105 150 238 263 61 41.0 1e-09 MANADSQPLTLKRILLVALTGVGAGFLSGLFGVGGGLVIVPALMAVLGMDQRRASATSLA AIIVTAAVGSGSYALHGEVSWAGAALLVVGALAGSQIGVWLLRRLPAPALPWILIGFTVF VIVSQYLHVPTREGSVLLTPASCALMILVGLCAGILSGLVGVGGGSVIVPGMELAVGAGD LIARGTSLLVMIPTGIAGTVTNLRHRMVDLRVGLVVGVSAAAATPVGRLVATWVSPSVGA ILFNVFLLSIIASTVLKMRRKARAQD >gi|292821672|gb|ACYT02000012.1| GENE 11 10670 - 11221 606 183 aa, chain + ## HITS:1 COG:CC0205 KEGG:ns NR:ns ## COG: CC0205 COG2249 # Protein_GI_number: 16124460 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Caulobacter vibrioides # 2 176 6 178 185 105 37.0 5e-23 MSNVLVVSGHPRTGDDSVANKTILEELAVLLPGAEIDHLDDLYPEYTFDVEAEQEKLRAA DVIVLQYPLWWYGWPALLQKWMEDVFVRGFSHGSSGTALRGKKLVVSVTTGASQAYYAPD SVDFNDLLTPAKATCALTGIEFAGSLPLYGVSYANRTDEAAHADMVERSREHAKHLAEFV SSL >gi|292821672|gb|ACYT02000012.1| GENE 12 11442 - 11903 377 153 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189221|ref|ZP_06607944.1| ## NR: gi|293189221|ref|ZP_06607944.1| putative protein CrcB-like protein [Actinomyces odontolyticus F0309] # 1 153 23 175 175 258 100.0 7e-68 MFLVGLPLSYAMDLALIYFFGFLGFFTFFQVLIAITRKFLEKAGSWKIVAIVGAVSSDVA VLWFLGWLIGGIFSGPSWGLVAQWLPYHFVAALCAWGLREFVYWLSPRDTATPSAPTSPA APAETENPGDFNAADAPTATTGSTEADSDSDKQ >gi|292821672|gb|ACYT02000012.1| GENE 13 12001 - 12315 373 104 aa, chain - ## HITS:1 COG:SP0951 KEGG:ns NR:ns ## COG: SP0951 COG3070 # Protein_GI_number: 15900829 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Streptococcus pneumoniae TIGR4 # 1 75 1 75 75 86 56.0 1e-17 MSSSEEYREYVLELLSGLEEVSYRKMMGEYVLYYRSKVVGGIYDDRFLLKVTPASERLLP DAPRAIPYEGAKEMLLVEVEDREALRDVVDAMWEEVPAPKKNKK >gi|292821672|gb|ACYT02000012.1| GENE 14 12768 - 14042 783 424 aa, chain - ## HITS:1 COG:no KEGG:ckrop_0313 NR:ns ## KEGG: ckrop_0313 # Name: not_defined # Def: hypothetical protein # Organism: C.kroppenstedtii # Pathway: not_defined # 1 417 1 418 419 556 64.0 1e-157 MFTPIHRALGLEPGNISIILFKQAVEHSVEETSDLDWKRVAYDSRKPRWDEEAAKDIAAM ANSGGGWIVFGVEEDGDKNTASKIVPISWSATDQQRILRAAYAKIGPPVVGLEFHEVPCG NEGGGSVVMMRVPDSADAPHFAKKGDDAFVAPRRNGPHTVYMSDREIERGFRERFQHADD QERLLQDRYERACEALRPEDGVFLALAAVPHEAVTGRVPTTVDLIHQYANAPIAPELVSG TRVDNWWSGGEVKKGLRQWIIRGYQSSRGYFRKFLHDDATVVGAYQLGLLVTDPRWSDRY PVGMTNHCRGNEVETAVTDFITLLRSHAKERQAHGGFRIRAGLVGIQKKPIYIHGMSLGN SLLGTEYMEPIVRFQPITMELDPLLTIDEVLPIINDLALDLINQGGVQYLQVMAEPNDQQ SEPE >gi|292821672|gb|ACYT02000012.1| GENE 15 14192 - 17245 3640 1017 aa, chain - ## HITS:1 COG:XF2725 KEGG:ns NR:ns ## COG: XF2725 COG0610 # Protein_GI_number: 15839314 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 1 1014 1 1006 1007 1093 55.0 0 MSTDAPRPRIEPVVVSDEFTVVGLYHPTRDQEQDYQSEAALEDDLIKQLCAQAYEYVDIH DRDGLEANLRVQLEALNNYRFSDREWKDFYRHSIVDVRSSDGNPVVAKARRIQEDHVQVL TRDDGTTKNISLIDTTNIHRNKVQVIRQYAIDTGARSNRYDVTILVNGLPLVHIELKRRG EELRQAFNQIDRYQRDSFHAGAGDGLFGYVQIFVISNGAHTKYYSNTVRLQHITENQGTR RQVAAANARSYEFTMWWTDAANNQIPDLTDFAATFLAKRTILSILTRYCVLNTRGELLVM RPYQIAATEAILQRIKTSSMNKQTGTVAAGGYVWHTTGSGKTLTSFKTAKLAAGMEGVDK VLFVVDRKDLDHQTIREYNAFAEGTVSANQSTRQLAQQINDPSTPIIVTTIQKLATFVKS HRGHAIYSGHVVLVFDECHRSQFGDMHTDITRAFRNYHLFGFTGTPIFADNASSSGKANL RTTEQAFGDQLHSYTIVDAIRDKTVLPFRVDYLNSFRVRDGIDNHDVEGIDTDSAYMNPQ RISAVVSYILEHFDQKTKRHASFQYKERRVNGFNSLFATSSIKAARAYYQEFKRQQADLP EARRLSVGIIYSYAPNAEAPGTGLLSEESMDPSALSQDDRAFLDEAIADYNQQFGASFGT DASGFEGYYTSLSTALAERRIDLVIVVDMFLTGFDSKSLNTLWVDKNLRAHGLIQAFSRT NRILNSVKTFGNIVCFRNLEEATNDAIALFGNKEARGQVLLRPYGEYLSTYLETIEQLRI GFPLPIGSIASEKEQKRFIDLMGQVLRLRNILTSFDDFEGDDTIASRELEDYRSVYLDLY HEARERSKVEKEPIADELVFEMELVKQVDINVDYILMLVEHHRGERGDGDDREIPVEITR ALAASPALRGKRDLIEEFYRRVSLNGDVPTEFESFIAAKRDSELDAIIEAERLGEGARDF AYDSLREGYVPDEGTGLSSILPPARRFGGGGSREAIRSRVLDALRTWVERFSGLGGL >gi|292821672|gb|ACYT02000012.1| GENE 16 17543 - 17740 56 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRQPICSKIYVQPAAASSYRQIQMKEMSIFFSASVEKSSSLTLSGSQNFRLRMMSINALR RRRSG >gi|292821672|gb|ACYT02000012.1| GENE 17 17727 - 17876 69 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGCLTDRANFASHCSQVIWHIWYARPSLFTRKQMGTEHEESVSFPLISF >gi|292821672|gb|ACYT02000012.1| GENE 18 18024 - 18206 108 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189227|ref|ZP_06607950.1| ## NR: gi|293189227|ref|ZP_06607950.1| hypothetical protein HMPREF0970_00261 [Actinomyces odontolyticus F0309] # 20 60 1 41 41 74 100.0 2e-12 MVASVTAALRCRYVVFDLPMFKKIIKDSSCFVDFAHATHNEPTAPDIVKRAKFETIVIAL >gi|292821672|gb|ACYT02000012.1| GENE 19 18455 - 18931 412 158 aa, chain + ## HITS:1 COG:Cgl0313 KEGG:ns NR:ns ## COG: Cgl0313 COG3600 # Protein_GI_number: 19551563 # Func_class: S Function unknown # Function: Uncharacterized phage-associated protein # Organism: Corynebacterium glutamicum # 23 154 19 148 148 69 35.0 2e-12 MEAQQKGIDMAQSIVDVATYILERTGTVTTMKLQKLAFYSQAQHLAQYGSSLFPEDFEAW RGGPVAPELYALHRGMFLIRPGELVSGGSSALTDAERALIDSVCSALGDMTGAELSERTH LESPWLDAREGLAPSVPSNAVITQEAMRSYYQEHPVFA >gi|292821672|gb|ACYT02000012.1| GENE 20 19407 - 19634 138 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507564|ref|ZP_02043206.1| ## NR: gi|154507564|ref|ZP_02043206.1| hypothetical protein ACTODO_00043 [Actinomyces odontolyticus ATCC 17982] # 1 75 1 75 75 108 100.0 1e-22 MNIREVRRHGDGWGVFDPNASRASAVEPTQAAAQQRARDILANQGGGEMRTRGENGKIRA QDTIKPGNDPRRSRG >gi|292821672|gb|ACYT02000012.1| GENE 21 19678 - 20865 841 395 aa, chain - ## HITS:1 COG:XF2726 KEGG:ns NR:ns ## COG: XF2726 COG0732 # Protein_GI_number: 15839315 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Xylella fastidiosa 9a5c # 1 391 1 407 409 300 44.0 4e-81 MSRLAELIAQLCPDGVEYRPLGEIADLQRGAGMPKKLFVDKGIPAIHYGHIFTKYGIQAK CAAAYLAPEDAEKLTRVFPGDLVVANTSENLEDVGKGVVWLGDVEGVTGGHATVVRSLAV DSVFLSYYLRTEDFALKKRKYAQGTKVIELSAANLSKIDIPLPPVEVQREIVRILDQFTT LEAELEAELEARQAQYEHYRNHLLSYDSLAARGPVEMVKLGELAHIATGGRNTSDAVDNG TYPFYVRSQVPLSLNEYDFDESAVLTAGDGVGVGKVFHHVEGKYALHQRAYRIVPNLELL SSRYLYHVMVSQFGRYLESTVFHSSVTSVRKPMLERFPVAVPPMEEQDRVADVLDRFNAL VNDITSGLPAEIAARRAQYEHYRDRLLSFPEKKAE >gi|292821672|gb|ACYT02000012.1| GENE 22 20862 - 22442 1680 526 aa, chain - ## HITS:1 COG:XF2728 KEGG:ns NR:ns ## COG: XF2728 COG0286 # Protein_GI_number: 15839317 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Xylella fastidiosa 9a5c # 6 525 8 524 525 684 65.0 0 MAAVIERAELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAII AEGGTPEEAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAASDENLNETL SYAFRFIENSARGSGSESDLRGLFDDVDVNSTKLGNTVAQRNAKLVKIMDAIGDLPLEHG AAQIDAFGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSDVTRVYDPCAGS GSLLLKFAKLLGPSSSRQYFGQEINLTTYNLCRINMFLHDVNFSNFDIALGDTLTEPAHW DDQPFDAIVSNPPYSTKWVGKDDIALINDPRFAPAGVLAPKSKADLAFTMHMLHWLAEDG TAAIVEFPGVLYRGAAEGKIRRYLVENNFVHAVIQLPPDLFFGTTIATCIIVLKKARPDH SVLFVDASAECVREGNKNRLTAENQQRILFLVSERQAVDHVAALVSIDDIKDNDWNLSVS SYVEPEDTREQVDIVELNSRIAGIVERQRHLRASIDAIVAELEADR >gi|292821672|gb|ACYT02000012.1| GENE 23 22874 - 23749 1178 291 aa, chain + ## HITS:1 COG:no KEGG:Coch_0929 NR:ns ## KEGG: Coch_0929 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 39 280 3 236 579 104 29.0 4e-21 MNGRIFTRMTPPLGSPVNDVEDTHIIETRHPLTIPAAIVLGTAVVATALPLPSSTPATAT GTAHVTRAYTDKSTHEPGKQATITAEASTERTVHFSVSHLGVEIDSGDATVTNGKATWTY TTPSENNRGYLVTATGGDGTHAETAFDASTSWTRFPRRGYLSHFKPTAPDGLADNATYEP YLFHAPSDYVTKLSQDYHLNAFQYYDWQYRHEQPVAKGDLKNEWPLWYRDTYASAATINT YVTKADAVGASSLAYSMAYAVNDGYDTNAIKEDWILREDNGSNWQRDFGSQ >gi|292821672|gb|ACYT02000012.1| GENE 24 23999 - 24505 530 168 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189234|ref|ZP_06607957.1| ## NR: gi|293189234|ref|ZP_06607957.1| putative surface-associated protein CshA [Actinomyces odontolyticus F0309] # 1 168 1 168 168 288 100.0 8e-77 MGINLPDGAGNNKVIPGSTTYLYTEPWDNNETNAQVASYLQSVRATGTKKPMVVTAYAND YDPTTLYWDAAANEYKHPEITPNNGVRIEAESDQANVSGDVTIVSGDASASGGSYTSGIA KDGDAVTFTVDAGQGGAFTFSPRYSSRQADGASHQVMIDWARRVSRSS >gi|292821672|gb|ACYT02000012.1| GENE 25 24427 - 24720 85 97 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRAVRGERRIREFDGIRVELAERNAVDVDGRVLLVLVDREGKCVDARGELHIDGDIFVPV GGTFRLVEGDVLQELLLTLLAQSIITWWLAPSACRLE >gi|292821672|gb|ACYT02000012.1| GENE 26 24844 - 26949 1523 701 aa, chain - ## HITS:1 COG:no KEGG:Tbis_1636 NR:ns ## KEGG: Tbis_1636 # Name: not_defined # Def: hypothetical protein # Organism: T.bispora # Pathway: not_defined # 440 701 391 651 651 102 33.0 6e-20 MARGYRAIVELDGKEGALQTADRLFHEWVHKKYLSKGSQSRIECDAEGIYRFGELTSQKG NIADIVATKLTETSEDKHYERQLLELVERTGDGHQQWTTRIFAMHATKESHYRDVVWIEV TPPRDSEWDAKPPRLVHDLISEGHCYDRGMPLSESLQSISDDRQVEELIGWIRDERRRAS VVVAAPLTDGSGEGDLVAECRWKEILGSLTWDSAGCASYFLLTPDAYREFRAGIGQGCGM PKGSLRTYLPGFNPEEPADRLRHRVLTAPTLLRGYDEKRKRFRPELSAIIARTPCEYLWE NGLDKELRRAQAPLDKKRLTVPTFYPLREVTRTVELLDERVRQRVAESLSALSRETGLPV EESSKPELVKPEDAAPGAPVSEANGRAMVAEPALPRSESRHLAWYEPLRRLIRRFLPSFN PRSHTELESGIAALSSGLDAMNEAHSELATQCDKLRDQLAATEDRLDETVRDSEEKSELL LQKGELESELREAQAEREFLSKRNRFLEWKLKNPDAKDSERDFVEEQLDNIPQSMSELFD RMTEGGYESVTRYVVLSEPDAMIDDILKLDALDSGRYAAEFWNYILVLRDYMRAREAGDF SGGNVHDYLANPPDGYRTCSASRHKSNESETVKGNEKMRRERTRPVPAEVDPRGEIEMWA HFAPTHCDQNAPRMHYYPDTTKTNKVYIGYIGRHLTNTKTN >gi|292821672|gb|ACYT02000012.1| GENE 27 27144 - 28064 623 306 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507567|ref|ZP_02043209.1| ## NR: gi|154507567|ref|ZP_02043209.1| hypothetical protein ACTODO_00046 [Actinomyces odontolyticus ATCC 17982] # 62 306 1 245 245 465 100.0 1e-129 MNKFAPPTGDENAAPGTVPAEQAGAAQPVPGPNAAWNQGSGAPMSQPWAPAPAPVAQPGS QMARSSYGTFYAVTDKDGRSLGRWLIWSIGLACAALFTWIGIEGGEWFYASASITGGVVC LLLGAAEGGRSPWFVSVVSTPDGTILVRPGSTVMYLRVLTALLASAAGVCFFYVSLFSVD ADIRSIAGGNVLSAAVVALYLVAKIIGSQSRECIVVSQQRVDMWGKGGIHYSIPWSDQPR VIGQRNSGRSLLIGAGQNIECLVVFTTLRIRPSRVRSLLTYYQTTPGALDRLSTPEARDE AMKVLS >gi|292821672|gb|ACYT02000012.1| GENE 28 28228 - 28578 623 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189238|ref|ZP_06607961.1| ## NR: gi|293189238|ref|ZP_06607961.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 116 1 116 116 196 100.0 5e-49 MGMRSTTQAFQFAVPFEQLFPLATPAAQSVPKATVTLADPNRQVVTFDTPMGMMSWGENI VVGFIPSEAGTVVEVTCTTKGLPNLMQDSRNRKLIAQFVTALSNLAQTTAVEVARS >gi|292821672|gb|ACYT02000012.1| GENE 29 28872 - 29504 772 210 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189239|ref|ZP_06607962.1| ## NR: gi|293189239|ref|ZP_06607962.1| putative 3,4-dioxygenase beta subunit [Actinomyces odontolyticus F0309] # 1 210 1 210 210 334 100.0 2e-90 MINTRRILAVTSLSVLGLGIAACSPQGAQHQSGSTASSASPSASASQNDMPSQSGAGPQS GVPDEGNQAPDVNVADNDQRCDLTNLQPSIDSQQEAGGTTYVDIGFTNEGPSCWIDGFPQ IIFSGGGSVISTAVRDGEDPGNVYTIAQGGRVGVTLTAESTDGVEGCNPADSELVDIMSE AGTGATSLQLTLRVCQEMPSVSVSPFEPRS >gi|292821672|gb|ACYT02000012.1| GENE 30 29620 - 31122 2013 500 aa, chain - ## HITS:1 COG:YPO1309 KEGG:ns NR:ns ## COG: YPO1309 COG0833 # Protein_GI_number: 16121591 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Yersinia pestis # 21 489 17 486 503 528 57.0 1e-149 MATPTPDDIANDVQERSNTALKRGLASRHMQMIAIGGAIGTGLFLASGATVANAGPGGAL LAYAAIGLMVLLLMQSLGEMSAHQPVAGSFQTFATKFISPSFGFAMGWNYWFNWAVTVAA DLVASGLVMAYWFPSVPSWLWAVGFLVIVVGLNALSARVYGEAEFWLAAIKVVIVIVFVL SGVFMIAGVMGENSPGLSNWTIGDAPFHNGFVGVIAVFMIAGFSFQGTELVGVAAGESEN PRRDVPRSIRTVFWRIMFFYIGAIAVIGTLLPYTDPSLLSAADDSANNIAQSPFTLVFAR MGIGAAAAVMNAVILTSILSAGNSGLYAASRMLHSMALKRQAPAIFARVTKGGVPAYAMA VTTVTAALGFLTQLVFNDAYIWLVNIVGISGIIMWLGIAVSHIRFRRAYLLQGYRLEDLP YRSPFFPAGPIIAFVMCLVVMAGQNYEAVLHGQVWEVASSYIGLPLFGVVWWGYHVARKD RVVPLAEMDVAPVEIEPVTR >gi|292821672|gb|ACYT02000012.1| GENE 31 31340 - 32032 877 230 aa, chain + ## HITS:1 COG:lin2751 KEGG:ns NR:ns ## COG: lin2751 COG1285 # Protein_GI_number: 16801812 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Listeria innocua # 11 146 9 144 220 125 47.0 9e-29 MTQSLMSIGWMLLALVLSASIGLERQIRGKSAGIRTQAIVGLTACLMMLISKYGFSDILV DGITRYDPSRVASQIVSGIGFLGAGIILTRHGAIRGLTTAATIWETAAIGMACGAGLWWL AAAGTVLHFIVIALLTPLVQFILMRTHGHKVTLTIHYTPGHGVLSTLLSQVSALGWTVSA VSTHTDSSDRATTARFTASTRQDLSRSLLVTTLADLDGVAGVDFSEDDDE >gi|292821672|gb|ACYT02000012.1| GENE 32 32105 - 33973 2381 622 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189243|ref|ZP_06607966.1| ## NR: gi|293189243|ref|ZP_06607966.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 622 1 622 622 545 100.0 1e-153 MSTIDPSQLTAADLSNPALSAQDLADITAARPDLRPYVATHPSLYPALGQWLADQGVVPA QPPAAEEPAVSEPEAPAEETSEQAEPFAGGHEEAQPEAEAAPTEVPVDRPAVEEAHVETP AEPEVAHVEPEAPVSEATDDNLEQAILEGAAQSEAPAVDEAAPTQSTEEQVAQSPFSNPP QTDAQPQSQPEVGAQAQGQPPFGAQPQQGQQAPFGQPGQPQYGTAPQQGQQGQPQFGAQP QQGQQAPFGQPGQPQYGTAPQQGQQGQPQFGAQPQQGQQAPFGQPGQPQYGTAPQQGQQG QPQFGAQPQQGQQAPFGQPGQPRQQQYGQPGYAPAGQSTGQQFGAAAQQFGAAANSAFNQ FQTAVVAETGKVSGRSVRATYSLIGIAAAAVLILISMFLPYFSGYGMTASMFEVKGGYSA FHLILLIAVVGLGVAYWFTNQKWAFLSAGIGALVVALLGIIQFIVALSNQYVDAGFGAFL LALFSIALGAAGGLLLMELKTGAVAPINNPNAFGGAFAGVQMGQQQGQFGQQQGGFQAPQ AGQPQFGQQQGGFQAPRAGQPQFGQQQGGFQAPQAGQPQYGQQQGGFQAPQAPQAGQPQF GQQQGQQPQLGDKPYNPFGPQA >gi|292821672|gb|ACYT02000012.1| GENE 33 34311 - 35078 693 255 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189244|ref|ZP_06607967.1| ## NR: gi|293189244|ref|ZP_06607967.1| male-specific opa-containing protein [Actinomyces odontolyticus F0309] # 63 255 1 193 193 298 100.0 2e-79 MTLPNNPFATHSGVPQPSQEPAEASSLPAPTGAPVMVAPAAHPFGAAPLHTGAVSSARSS RSMRGRIAAWMLIVCQSISLVHGFIPYRFDHLDDYVSRFSNPLFWLWRLMEIVVIVLAVL YIRKGAAIARYVAACVILVLFFVVTPIVLVTNDSVWYYAFVPEPGIYELGLLGARLLLMR VLDWVCVIAAILLAIPDFKPAPSPYAMSAPVPAAGAAPAGHVTSPAVTPEGASSEAAPKN SSAQATNVSVFAAPQ >gi|292821672|gb|ACYT02000012.1| GENE 34 35279 - 38437 3953 1052 aa, chain - ## HITS:1 COG:Cgl0762 KEGG:ns NR:ns ## COG: Cgl0762 COG1615 # Protein_GI_number: 19552012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 58 1026 7 967 967 492 33.0 1e-138 MRGYTGSELIGFTERTAVSFNFSVFPPGGARAPRDPDSPPVELKMRKPGPGAITLGVLIA IGAIIYAASVVWTEILWFRQMSATRVILTQWGAHIGLFVVGFIVAAALIFFSMAYAYRHH ASSTRGQASASLRAYQKALEPVRRLAFWGVALFFGFTNGARLATEWQTLLQFLNRSSFDQ VDPQFGLDISFFVFVLPALKVLVSFLMTVTAIALIASLIVSYLYGTIRLAPRPHASKQAR LQSGLMAACLSLFIAANYWLGRYELLTSDSGSIHGAMYSDINATLPAHSILAVISGLVAV LFVVAAFKGTWRLPVTGVAVTVIAALILAGAYPALVEQFRVRPNQRSLESPYIQRNIDAT LAAYGLQDVDYQTNYDAATTASAGQFDTESLTSQVRLLDPQVITKTVQQLQQSRLYYGFN SGMKVDRYNVGGERRDTVISVRELNLSGLSAEQQTWVNQHTVYTHGYGAVAAYGNQLTSD GLPSYWEQSVPSVGEMGDYEERVYFSPGSPDYSIVGAPEGSEPQELDYPDDTAVGGQVST TFVGNGGPSVGNVWNKLLYAIKFASTDLFFSSQTNEASQILYNRDPLQRVAKVAPYLTLE QSAYPAVVDMDGDPSTPKRLVWVVDAYTTTNNYPYAQHETLSNATVDSRSTEVGQYVQAN KINYMRNSVKAIVDAYDGSVRLFRWDDQDPILRTWEKIYPGSVEPVSAISGDLMSHLRYP EDMFKVQRNLLATYHVTDAAGFYSGGDRWRLAEETSTHGAASSSNSSTRVDAAGNPVPAP TALQPPYYLTMQMPGQDSAEFSLTSVFVPGGGGEGRREAMAGFLAVDSETGNTPGQVREG YGKLRLLALPSSTTVPGPGQVQNKYDSDEKIATQLNLLNQADSTVIRGNLLTLPVGGGLL YVQPVYVQGTGSASYPVLRSVLTAFGDKVGFAPTLEESLRQLVADDGSATTPQTPQTPPA SDDGSQSGATPPAASGDANARLTQAINDAAQAMRDADSAMSKSDWTAFGQAQTRLRDALA RAEAAQQELGAATPTPTPSPSPSATSGAQSGS >gi|292821672|gb|ACYT02000012.1| GENE 35 38488 - 39057 653 189 aa, chain + ## HITS:1 COG:no KEGG:Bcav_2886 NR:ns ## KEGG: Bcav_2886 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 8 181 2 178 179 127 50.0 2e-28 MTVEMMPSAREIALANVVVDIEKGAARVGWDHAPSIYALVPTAMLLADPNLPADIAEQLR TGWDGTEDHLSAIIQEDLADDDIEQVLAHLAWPETVPGAALTVERIVVPPEVEDEAPEDP DEALAFISNHPLRTDVRLAVGVMRTGESWCALRTRAFDSDDKVGQGSALVPALVDALRAS LEPVTDEQA >gi|292821672|gb|ACYT02000012.1| GENE 36 39163 - 40359 262 398 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764799|ref|ZP_02171852.1| ribosomal protein S12 [Bacillus selenitireducens MLS10] # 122 359 68 310 350 105 32 2e-21 MNDAQMTSENIELVPLQEDDSTRRIPIVSWRIVTAVLAVLAMVAILFWIPVPFVVNSPGP TFNVLGSDKGVPMLQIEGTDPATGEPIQQDEPQSTSYKAPAKPGQGQLRMVTVSESGNPQ SRLNFAQLIAAYFDPHSKIVDYESVYPEGMTQERSSTAQLAMMRNSQTTSQVAALEYLGW EVPATVTIEGAVDGTNAEGIVQQGDILRAITTPDGVRHEITSAATPFALMRSVPAGSTMT LTIEREGATQDVSFASVAASATESGSKLGVYLSVDPALPVDITVNIDGVGGPSAGMMFSL SIIDRLTPGDMTGGNVIAGTGTMSYDGQVGGIGGIQQKLWGAHRDGAQWFLAPSENCNEV VGHVPDGLRVVSVSTLDEAVNAVRSIADGTGDALPTCQ >gi|292821672|gb|ACYT02000012.1| GENE 37 40481 - 41947 1894 488 aa, chain + ## HITS:1 COG:MT3287 KEGG:ns NR:ns ## COG: MT3287 COG5282 # Protein_GI_number: 15842777 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 35 450 53 451 472 246 39.0 7e-65 MNEFDSGTPFEDFLRSILGEEAAAEAARALQAQGFDPANLPPEFSDPARMRAAMGQFQFL MNTTAGPVNWRMVEDSAKQAAYASGDPSPTATEAEAARQAMTVADLWLDAVTDFASGPVT RDVWSKVAWVEHTIPSWKRICEPVALNVSRALSAALSEQFGSEGLGDAASLPDGMAAMLG KTQEMMPRLSAMMFSAQIARALAALAGESFGTFDTGIPLSDTSHAALLPHNVAQFSEGLD IPFDEVRQFLAVREAAHRRLFASVPWLEGDLVRAVERYASQIAIDTEAISEAARSVDPSD PHSVESALSGGVFALSTTPDQRRALTRLETMLALIEGWVEVVTARATLPYLPHADALREM MRRRRASGGPAEEILGTLMGLQMRPRQARGAASIFALVEADGGRDAREALWSHPDMVPSE TELATPDTFLALRRAAAEEDADIDAALNSLLDGTLGWADGLEPGDEASAGSDDEPENPEA SNPKDATD >gi|292821672|gb|ACYT02000012.1| GENE 38 42058 - 42936 739 292 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189250|ref|ZP_06607973.1| ## NR: gi|293189250|ref|ZP_06607973.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 292 1 292 292 530 100.0 1e-149 MNLMHHTAILWRGPGSVQIGGDRARHVRLDDLHASDQLWLASQAGPVHASDSPEASPDLL AALAAADLMEHPDRRPLLSVGVLGAVPATVLALRSLVDTLALWLRIDAPTLVDGDWDHVF GGTYTGTPRSRAVRRELASLIPLPNLHAQDTPDVALVSADRAQDPGIPFELMAADTPHLL ITRGEHSYEIGPFVIPGSTPCFHCIEHARAEQDPYHLTHLRELAQWPLGPLPQLAHFAAA LRIARLLRDFAAGALTPHLCAEIATVDEDGTIAVERAIGAHECVCGIDGVAC >gi|292821672|gb|ACYT02000012.1| GENE 39 42938 - 44977 2273 679 aa, chain - ## HITS:1 COG:MT3291 KEGG:ns NR:ns ## COG: MT3291 COG0210 # Protein_GI_number: 15842783 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 8 670 2 698 700 444 44.0 1e-124 MGDGTMGTMNPEELLEALDPDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGADVGAF DPSNVLAVTFTQRAAFEMRHRLAQLGVPKAQARTFHSAALRQLRHFWPTVVGGPLPDVIP HKASLVAASAARLGITIDRTNVRDIAAEVEWAKVSMIDAAHYASRVARLRRDVPAGLDAG DMARLLDVYEDAKNERGVIDFEDILIYLCGMLQERADVASIVRKQYRSFVVDEFQDVNLL QARLLDLWLGGRHDVCVVGDVAQTIYSFTGASPDYLTGFGRKHPGARIVELTRDYRSTPQ IVSLANDVLARSSQREGTVRLSSQRDGGAQVSYRTYDDDRAEAEGVAASIANLIAGGMAP HSIAVLMRTNGQSQAFEEALGARGIPIAVAGGKPFFARDDVRTAISRLRAAAAAATDDGS VGEIVRDVLSGVGWAPEAPSGQAGSERWSNMNAIVGWADDSKAETLAAFVAELDERVAYQ VEPDKAGVELATIHAAKGLEWDAVFLVGVAEGLLPISYAKTAAAREEERRLLYVAVTRAR DLLTLSWARSRGADGRGKRHRSRLLDGIWPEEVGVGAPKKRARASTRALNQAFEEESSPQ VIELFGRLKAWRLEVSRQAGVPPFAVFTDQTLRDIAQAMPKNTTQLRVIRGIGDVKVQRF AAPVLALVRGEEVIVDEGA >gi|292821672|gb|ACYT02000012.1| GENE 40 44980 - 45915 753 311 aa, chain - ## HITS:1 COG:Rv3199c KEGG:ns NR:ns ## COG: Rv3199c COG2816 # Protein_GI_number: 15610335 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Mycobacterium tuberculosis H37Rv # 104 296 110 309 313 121 38.0 2e-27 MSLDLPLVRGHVDAAVALRESVAPVALVRAGEADVILVDGAGFVLLDEVEASPSGAPVLR RLSGDEAVRAAEGGTASFIGVAQGRSVVAIEVSRDEAWGRWEHLRAVGWQLDGDDAALAV TALALAGWHANYRFCPRCGAPVQLVSGGWAARCEACDRLEYPRQDPAIIVLVEDHDGRVL LAHNALWRPGFVSIIAGYVEAGESPDITVAREVAEEVGVDIETPTYVATQPWPFGRSQMM GYRARTALPRPTPQADGVEIEWARFYSRDELTRALDNGEISAPGRASIAYALLREWYGEE LPSGPDGAGRN >gi|292821672|gb|ACYT02000012.1| GENE 41 45952 - 46719 1013 255 aa, chain + ## HITS:1 COG:Cgl2451 KEGG:ns NR:ns ## COG: Cgl2451 COG0689 # Protein_GI_number: 19553701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Corynebacterium glutamicum # 7 243 22 256 258 268 60.0 6e-72 MTNTPLRADGRTPSQLRPVSITRGWSGTGEGSILIEFGNTRVLCVASFTEGVPRWKRDSG EGWVTGEYSMLPRATEQRSSRESVKGKVGGRTQEISRLIGRSLRGIVDVSALGENTIVLD CDVLRADGGTRTAAITGAYVALADAVSWAKEQGILKPSAKVLTDSISAISVGVIDGTPML DLPYVEDVRAETDMNVVQTGDGRFIEVQGTAEHAPFNRDELNELLDLATLGNARLAEAQK LALEAPLMERVEVRP >gi|292821672|gb|ACYT02000012.1| GENE 42 46716 - 47330 392 204 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157155704|ref|YP_001464307.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia coli E24377A] # 4 195 3 191 197 155 46 1e-36 MSARLVFATSNAHKVSELEAILAPAWEGFEAGCVARMSDFDVASPVEDGVTFEENSLIKA RALARATGLAAIADDSGITVDVLGGAPGIFSARWAGSHGDDAANLRLLIDQLCDVPDAHR GAAFVSAAVLVTPDGREFVERGEVRGTLTRSPCGEGGFGYDPIFVPEGFEVTTAQMSADQ KNAISHRGIAFRALMPHIVEYLRG >gi|292821672|gb|ACYT02000012.1| GENE 43 47406 - 47528 122 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRFVASLLRRLTHHRRWRQQRNPLQFSMDRPIFGNLVAR >gi|292821672|gb|ACYT02000012.1| GENE 44 47780 - 48112 444 110 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189256|ref|ZP_06607979.1| ## NR: gi|293189256|ref|ZP_06607979.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 101 1 101 110 175 100.0 6e-43 MTIFSLAITILGWVGAAASIAAYYLVSSKRFAPDSLRYHSLNVSSCILLAIACASTGAWP SFLTNAIFIGVGCTMIWRVRDRLARRIMQVVRFFDVRRYLPRRARLARAR >gi|292821672|gb|ACYT02000012.1| GENE 45 48199 - 49116 998 305 aa, chain + ## HITS:1 COG:mll2048 KEGG:ns NR:ns ## COG: mll2048 COG0583 # Protein_GI_number: 13471925 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 5 254 3 256 329 79 31.0 6e-15 MDIDPRRLPFLLSVAREGGIVAAADILMVSPSAVSQQIQKLEEEVGLKLVERTTSGAILT PAGTIVAEAGERINADIEEALKALRPLTGQVTGTVTIGAFLTICRSTLIPALPDLADALP GVDLRIEETEETPGMAALRTGHYDILVIERDEDPGLAPRGYTDVPFLDEPWMLVTPDSAP PIGSIEDLADLTWLRVNPGSSGDHVMRRITKAFPDTRWAPHLYTTYEAARALVRARTGST ILPAMALAGAHTEGMRITPLPSLGTRKILLRHKNHGWSEASGPARVATYLAEWKRHNASY STSGD >gi|292821672|gb|ACYT02000012.1| GENE 46 49162 - 49959 796 265 aa, chain - ## HITS:1 COG:MT1380 KEGG:ns NR:ns ## COG: MT1380 COG1234 # Protein_GI_number: 15840794 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Mycobacterium tuberculosis CDC1551 # 1 254 18 258 273 165 40.0 1e-40 MKLTVIGATGSMSGPESPASSYLVQARGLDPRSGEERTFSLACDLGPGSFGALWAHVFPC ELDALALSHCHADHMGDIISLQVYRKWGPGAAASALPLYGPAETMRRVRQIEDAPDGEAY EAEFVFTHMQLGEAYQVGPMTIRPYRALHPVEAFGLRIEGPSEDDPERLVSLFYTGDTDL CDTIIEGARGVDVLLSEVGFTSDVTEPDMHMDGVRAGEVATRAGVGRMIATHIQPWTPRD RVASEVRQTWSGPLDFATSGMQVSL >gi|292821672|gb|ACYT02000012.1| GENE 47 49956 - 50786 896 276 aa, chain - ## HITS:1 COG:Cgl2459 KEGG:ns NR:ns ## COG: Cgl2459 COG0796 # Protein_GI_number: 19553709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Corynebacterium glutamicum # 3 272 21 284 284 269 55.0 6e-72 MNNAPIGIFDSGLGGLTVARAVIDKLPDEEIIYLGDTEHTPYGPRAIAQVRSLTLSALDE LASRGVKALVIACNTATAAALADARERYWIDAGIPVVEVITPAARQSVIATRNHHVGVIG TKATIQSEAYLRALAAVPGLTVSQQACPAFVDFVEAGVTTGEEIEAVAREYLTPLKEAGV DTLILGCTHYPLLTGVIGRIMGERVTLVTSSEATANVTYNELVDRGLLHDPWPAGDGPQH QFLATGASDLFPRLARRFLGPEVGSVARVNTGGGIA >gi|292821672|gb|ACYT02000012.1| GENE 48 50803 - 51375 333 190 aa, chain - ## HITS:1 COG:no KEGG:Arch_1114 NR:ns ## KEGG: Arch_1114 # Name: not_defined # Def: domain of unknown function DUF2017 # Organism: A.haemolyticum # Pathway: not_defined # 1 186 1 228 235 73 30.0 4e-12 MEGFALRDGVYASSMSDGEALLLRQLATEVLVVLDDPGEYAATSSMVNAATETEQRRDEP RERTLRMLLPSMSEDDEDAGRLRALTEDSLRTDKSVRLRAIVGDLDHIVHGESDTLRIQP EAVWSWLGALNDIRLGLAGELDLSDSHDARRIEELALSEPTGERSQTVAAIYMLITWWQD SLLEAVNNSQ >gi|292821672|gb|ACYT02000012.1| GENE 49 51380 - 51667 372 95 aa, chain - ## HITS:1 COG:Cgl2465 KEGG:ns NR:ns ## COG: Cgl2465 COG2127 # Protein_GI_number: 19553715 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 21 92 51 122 124 89 54.0 2e-18 MTTMFQPASRTHEAPTAVPRWRAVVWDDPVNLMSYVSAVFRQYFGYSNARAEELMMAVHT RGRATVSTGVRERIEADVMAMHSYGLRATIEEDRD >gi|292821672|gb|ACYT02000012.1| GENE 50 51749 - 53092 1806 447 aa, chain + ## HITS:1 COG:Cgl2467 KEGG:ns NR:ns ## COG: Cgl2467 COG1488 # Protein_GI_number: 19553717 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Corynebacterium glutamicum # 3 443 10 439 446 358 50.0 1e-98 MPASTSTSLLTDMYELTMLDAALKDGTAHRRCTFELFGRRLPATRRFGVVAGTGRILEAL ERFEFDAEQIDWLHDQGIISKEAAQFLASWRFTGDIWGYAEGECYFPGSPLLTVEGTFAD CTLLETLLLSILNHDCAVASAASRMTIAAHGRPCMDMGARRAHERAAVSAARAAIIGGFQ GTSDLEAAKRYGIRCIGTAAHAFTLLHDTERDAFDSQVAKLGTGTTLLVDTYDIRQGVIN AVEAARAAGGELGAVRLDSGDLVAEAFKVRGQLDAMGATTTKITVTSDLDEYAIAALGAA PVDSYGVGTKLVTGSGVPTAALVYKVVQREDSNGQIVSVAKKAESKSTVGGRKVAGRVMG EDGYATEELLLVGMSFEEGQALLAERGARPLQVQLVRGGQIDTEAWGPEALSRAQEHHLR ARNELPYQAWRLSEGEVAIPTRYEQVD >gi|292821672|gb|ACYT02000012.1| GENE 51 53198 - 54940 2238 580 aa, chain - ## HITS:1 COG:Cgl1868 KEGG:ns NR:ns ## COG: Cgl1868 COG1061 # Protein_GI_number: 19553118 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 13 575 5 570 570 590 56.0 1e-168 MSETTRRAPVGRLRAWQAAALDRYMATSPRDFLAVATPGAGKTTFALTLATELIARGIVD KLTVVCPTEHLKGQWASSAARFGIHIDPDFTNSQGVAGSHFDGVAVTYAQIGSNPAVHAA RTRAYRTLVILDEIHHAGDSLSWGDGVREAFTDATRRLALTGTPFRSDTSPIPFVTYEED EEGIRRSRADYTYGYGDALKDGVVRPVLFMSYSGQMAWRTSAGDEVSARLGEPLTKDMMK QAWRTALDPKGEWIPAVLRAADMRLEEVRRAVPDAGGLVIASNQEHARAYARHLRLITGK APTVVLSDDADASDRISEFADSTDKWMVAVRMVSEGVDVPRLAVGVYATNASTPLFFAQA IGRYVRARRRGETATVFIPSVVPLLTLAGGMEVERDHALDRPKRDEASEDDMWNPEDALV AAANREERASSDLLSQFEVLGADAEFDGVLFDGAAWGAGAEVGSEEEQEYLGIPGLLDAD QVTTLLRARQADQVAAQKKTRAAQKMREENAGIPAHKLRAAKRKELQHLVSTWSRRSGET HATIHSRLRSRCGGPEVAQATTEQIEARIALLREWFVGRH >gi|292821672|gb|ACYT02000012.1| GENE 52 54937 - 55269 570 110 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10096 NR:ns ## KEGG: HMPREF0573_10096 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 17 106 9 101 102 97 52.0 2e-19 MRNALDEPTGPSAPSGPSTASSTGLLERTETRKERTGGDGDRFAHFVRKDKANSSMVTGQ PVVALCGKVWIPTRDASQYPVCPTCKELRDSMGKNGRNWPFSDGGKGSDK >gi|292821672|gb|ACYT02000012.1| GENE 53 55404 - 56177 1246 257 aa, chain - ## HITS:1 COG:BS_ybfT KEGG:ns NR:ns ## COG: BS_ybfT COG0363 # Protein_GI_number: 16077305 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Bacillus subtilis # 1 247 1 248 249 215 46.0 8e-56 MRIGIFNDEDQIASLAADRILEVYRAKPNFVLGLATGSSPLKLYAELVRRYEAGQISFAQ VRSYNLDEYVGLPRDHYEGYANFIHRNLVDLVDMPEGAAHGPDGWCDDLEAGAAAYDEAI KADGGIDIQVLGIGSDGHIGFNEPGGTLASRTHVGVLTEQTRRDNARFFDGDIDQVPTHC VTQGLGTIMDSRAHIFIATGEGKADAVKAMIEGGVTQRWPASILQHHPDVTVLLDEAAAS KLELADFYREVWEKEHL >gi|292821672|gb|ACYT02000012.1| GENE 54 56253 - 56912 523 219 aa, chain - ## HITS:1 COG:PM0526 KEGG:ns NR:ns ## COG: PM0526 COG3142 # Protein_GI_number: 15602391 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Pasteurella multocida # 7 201 13 202 244 112 34.0 5e-25 MEDAVGVRRARDGGADRIEICTDLSCGGLTPAFDEVAAALEVAPAGGVQVLVRPRPGDFV HTREEVDRIASDIVTLSSIGRGSDVRLGFVVGVITRDGQIDVNAAARLRDTAEDAPLTFH RGFDQVADQDRGLDVLMELGYDRVLTTGGDPAVAQPDALARLVERGGDDIIILVSGGLRA HNVAEVVAASGAREVHMRAPGTSGTDQAEVERIVAALHG >gi|292821672|gb|ACYT02000012.1| GENE 55 56930 - 57862 373 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 11 296 4 313 323 148 33 2e-34 MSAVKDSAGPVFAGIDIGGTSIKWMIVDEAGAILTQGNEPTDREAVAEQVGRIGARLASD YPGLVGFGLICPGLVDEESGIVVYAANLELRGVQLARAVEDATGVPAALMHDGRAAGLAE GLLGAGRGASSFLMMPIGTGISVALMLGDNLWSGATFSAGEVGHAPVFPGGESCRCGSRG CLEVYASAKGIARRYEQATGEDIGAKAVEAGIGTDPVATEVWDTAVRALALSLTHMTLTV DVERIIIGGGLSHAGENLLAPLREEFASMLTFRDAPEIVRASLGGAGGRWGAAILAARVG GSTCYERWQP >gi|292821672|gb|ACYT02000012.1| GENE 56 57859 - 59316 1996 485 aa, chain - ## HITS:1 COG:AGc4702 KEGG:ns NR:ns ## COG: AGc4702 COG5476 # Protein_GI_number: 15889852 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 472 2 463 477 326 42.0 6e-89 MTKPRIAVAGIHIESSTFTPYISTADDFIVTRGEELMDRFYWRDEDWATQIEWIPVLHSR ALPGGVVERGAYDAWKAEILEGLAAAGPLDGLFFDIHGAMSVQGMDDAEGDLINAIRGVI GPDPMVSASMDLHGNVSQDLFDGCDILTCYRLAPHEDALESRRRAAYNLGMRLLNGQPKP VKALVHVPVLLPGEKTSTRIEPAKSLYKMIDPIEAMDGILDAAIWIGFAWADQPRCKGAV VVTGDDAELVKEQAERIGQYFWDVHDRFEFVAPVASMEECLAAAEEGPKPFFISDSGDNP GAGGADDVTVALAALLAWKPVQEATLDVIYASIIDPAAAAVAWEAGVGAEVDLEVGGHID TREPGPLNVHATVEALADDPMGGHTALLRTGGLRFIITTNRNQYTMYSQFELLGVDITTA DVVVVKIGYLEPDLYETQKGWLMALTPGGVDQDLIRLGHHKIERPMFPFDPDMADPDLNA QVVVP >gi|292821672|gb|ACYT02000012.1| GENE 57 59313 - 60461 900 382 aa, chain - ## HITS:1 COG:AGl455 KEGG:ns NR:ns ## COG: AGl455 COG1940 # Protein_GI_number: 15890335 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 326 49 360 429 111 30.0 3e-24 MATHDVDETILTLIGSGQADTRPAIVKQTGLAPSTVSAAVSRLVEAGVIAEAEHSVSTGG RRARRLVTSDGAGALALVELGAHHGLIALTDPTRGVGQALSLLIDIAEGPQAVLDAVMDE VSRQEEAAGVRVGGIALAVPGPVDAERSRVIRPARMPGWDGINVAEAVTEQCGLPALIEN DARAGAIGESVYRRRLQGVTPIDTLIYVKAGSAIGGAYLVDGVPQVGQGGLAGDISHIPV EAAAGRPCKCGNVGCLETIASADSIRADLAAAGLVYENNAQLLAAARDGIPEVATAIRQA GTLLGHCVAHLVSFLAPQGVIVGGALSAVDAFTAGVRAALHQSCLPSIMEHLVIESSRSG REAALWGLSTLTPSKISKENRS >gi|292821672|gb|ACYT02000012.1| GENE 58 60735 - 62522 2951 595 aa, chain + ## HITS:1 COG:L88446 KEGG:ns NR:ns ## COG: L88446 COG0747 # Protein_GI_number: 15673819 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Lactococcus lactis # 5 586 10 589 600 100 24.0 7e-21 MVTGAALAMVASLGLSACGGSSSSGGGQAANSETGKNEVTMASRTPNWIFPISAKGYTQG ENGQFIQAMYRPLFAYKSTSETPYKINLPKSLGTVPEVSEDGLTYTIKLRDDAKWSDGTP VTTRDIEFWWNLVTNNKDEWASYKKGFFPDGADLKIIDEHTFSITTETMFAPAWFIDNQI NKVALLPQHAWDKTSADEAVSDLDRTPEGAQKVFAYLQGEAKNLSSYATNPLWQTVNGPW KLAEFTPDQGLKLVPNENYWGEDKPKIDALIYKAFTGDDAEFNSVRSGAIDFGYIPAAQY NQRKAVEDKGYNVFLWPGNSITYLALNFHEKAPGSKFINQKYIRQAMQQLIDQPTLSEKI WSGTASPTCGPVPMPAEKTGTTEGCVYKFDPDAAKKLLEDHGWKVVPDGETTCENPGTGA NQCGEGINAGDKLNFKLVSQSGFVSTHQMFEEIISQFGKLGIKIDMNEVPDSVGASQACD DETPCTWDMSFFGSQTSWGFPIYASGERLFASDAPVNLGQYKNPEADKLIEESTRSSEPN ALQAYNDYLAEDLPVLWMPNPYYQITAVKKTLDLGELDATGDTWPEDWSWSTEGK >gi|292821672|gb|ACYT02000012.1| GENE 59 62602 - 63561 1503 319 aa, chain + ## HITS:1 COG:PAB0092 KEGG:ns NR:ns ## COG: PAB0092 COG0601 # Protein_GI_number: 14520361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Pyrococcus abyssi # 3 316 4 308 310 221 39.0 2e-57 MIQFILKRLGQAVIVVFLVTIITFILLQSQPGGAARAALGKDATQEQLAAFDHENGYDRP IPEQYVNYLNKIAHGDFGYSYQHNQSVNDLLAARLPRTIFLSLLSTILALIVAIPLGVWQ AVKRNKAPDYIVTIACLLAYSTPIFFAGLLLIVLFSQVWPILPNDAPQGEALSVMWEQWD HLVLPVCALSIGTIAAYARYVRSSMVDNLNEQYVRTARAKGLSEFRVVFVHTLRNAMFPV ITMIGLYIPAMFCGALVIETLFNFNGMGYMYYQATGRRDYPILLGVALIVSFATVIGALL ADFLYALADPRIRLAGRAK >gi|292821672|gb|ACYT02000012.1| GENE 60 63558 - 64457 1220 299 aa, chain + ## HITS:1 COG:BS_appC KEGG:ns NR:ns ## COG: BS_appC COG1173 # Protein_GI_number: 16078205 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus subtilis # 29 293 33 298 303 202 40.0 9e-52 MTTATAPIAAPAKARTARKSTKLQGLQVFMENKLAVFGVCLILILMAFSFIGPMFYVTDQ IHTDLSNSALPPSAEHPLGTDMVGYDQLGRLMKGGQTSIIVGLFAGIFATTIGTLYGAIA GFVGGWVDAIMMRIVDALMSVPVLFLFMLIATMIPPTVPVLIIIMSALSWLGTSRLIRGE ALSLRTREYVVAMRGMGGSMPRAIRTHIVRNTIGTVIVNATFQVADAVLYVAYLSFLGLG AQPPATDWGAMLSNSQSHVYSGNWWLLYPPGVLIILLVLSFNFIGDGLRDAFEVRLRKR >gi|292821672|gb|ACYT02000012.1| GENE 61 64468 - 66519 859 683 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 338 668 2 324 329 335 53 9e-91 MNTPLLQIKDLHTDIEIRNGVVRALSGVDLHVNPGETLGIVGESGSGKTMTALSLMGLLP QGGKVSSGSIILDGQDLTQLPLKEKRKLRGTKVGMIFQDPLTSLNPTMKIGLQVCEPLRV HEKLSKREALARAVEILKRVGMPRPEVVINNYPHQLSGGMRQRVMIAMALVCKPRILIAD EPTTALDVTTQMQILDLIDELRDEYKMGVILITHDLGVVAGHTDRVAVMYAGRIVETAPT KTLFTEPKHRYTSSLMAALPERALAAGTKLFSIPGAPPSLTNLPVGCRFAARCLWATDEC RAGYPDLSGDETHTFSCFHPVQEGDESPAVLQGKLDSTKAEETASVVPQISHEVLLDVKE ASREYESAGSGFFKREKGVVSAVDRVSITVKKGETYGLVGESGCGKSTVGRLIAGLEPPS GGAIELDGRDLATLKGRDAVRIHRDVQMMFQDSYAAMDPRMRIDQILAEPMSIQKTGNAR QIAERIMEILEQVGLTEEILDRYPHEFSGGQLQRIGFARSLTLAPDLIVADEPVSALDVS VQAQVLNLMKDLQQELGLSYLFISHDLAVVQYMADRIGVMYLGRIVEEGPAHEVVKNPKH PYTKALIDSIPVPDPEFKHDESAIKLTGEPPSAVNPPEGCRFRPRCPFAGEECKVQPMLT DETHRVACHHPLLTLSVKEDVNA >gi|292821672|gb|ACYT02000012.1| GENE 62 67316 - 67597 552 93 aa, chain - ## HITS:1 COG:BH3356 KEGG:ns NR:ns ## COG: BH3356 COG0776 # Protein_GI_number: 15615918 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Bacillus halodurans # 3 91 1 89 90 66 47.0 1e-11 MSVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAAR TGRNPRTGEEIKIPAGYGVKLSAGSTLKKAVSK >gi|292821672|gb|ACYT02000012.1| GENE 63 68086 - 69261 1923 391 aa, chain - ## HITS:1 COG:BMEII0362 KEGG:ns NR:ns ## COG: BMEII0362 COG4214 # Protein_GI_number: 17988707 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, permease component # Organism: Brucella melitensis # 11 388 18 396 396 296 46.0 4e-80 MTAEISLVDMMKANLRQGGIFIAFIAIVVLFWAFNPDTFLSSGNLTNIVLQYSYILILAI GMLFVIVLAQIDLSVGSVVAVTGALSGVLVIKQGYPWWVGVVAALVMGILIGAFQGFWVA YVGIPGFIVTLAGMLLFRGLTYQVLDNVSLSPFPKGYYNIANGFLNGLLGGNGFDVFTLV IFGVGVAGFAYQQVRTRRARISYNQAVEAMWLFITKIVLTAVVVMWFAYKLSTERGLPIV LILLAILVLVFGTLASSTMFGRDVYAIGGNKSAAALSGIDVKKVTFWCYVNMGFLAGVAG VVYSARMNGAQPSAGNMFELDAIAACFIGGASTTGGIGRLSGALIGGLIMAVMSNGMQLM GASTSTQQIVKGAVLLLAVAFDVWNKQRTSA >gi|292821672|gb|ACYT02000012.1| GENE 64 69258 - 70805 2349 515 aa, chain - ## HITS:1 COG:mll5657 KEGG:ns NR:ns ## COG: mll5657 COG1129 # Protein_GI_number: 13474710 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Mesorhizobium loti # 1 502 1 499 510 591 61.0 1e-168 MTQNILEMRDIDKGFNGVPVLKHVNLDVRPGEVHALCGENGAGKSTLMKVLSGVYPHGQY DGTIIFDGKEVQFRSIKDSEALGIGIIHQELALVPYLSIAENIFLGAEKPRKLGLIDWHE VNHRAEKVLEKVGLNENVTTQVGTLGVGKQQLIEIGKALSKDVRLLILDEPTAALNDNDS AQLLDLVRSLRDQGVAIVIISHKLGEIAEIADRTTILRDGQTIDTIDMKDPASTQGKIIS LMVGRDLTQRYPERNVEIGEEVFRVEDWTVYHPTQAGRVVISGASFNVRHGEVVGIAGLM GAGRTELAMSIFGRSFGTRISGKLFKDGKEITIKSVSDAIKHGIAYATEDRKQYGLNLID DIRHNVATAGLFKLSRRGLVDGHKELAVAADYKERMNIRSNSVLQKTGSLSGGNQQKVVL SKWLYTDADVLILDEPTRGIDVGAKFEIYTLINKMVEEGKAVIVISSELEEILGVSDRIY TLAYGRITGEVKAEDATQENLMELMTIEPAREEQK >gi|292821672|gb|ACYT02000012.1| GENE 65 70804 - 70914 62 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFTFLESDGVGCGASAPHPVVAYFFTTPASTSAWVK >gi|292821672|gb|ACYT02000012.1| GENE 66 70869 - 72053 1877 394 aa, chain - ## HITS:1 COG:BH3442 KEGG:ns NR:ns ## COG: BH3442 COG4213 # Protein_GI_number: 15616004 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, periplasmic component # Organism: Bacillus halodurans # 22 388 16 358 359 349 53.0 6e-96 MKTRGFFGKFATVAATFAAGALALSGCAGGGAGGASSSDSGAAASNGGKVKVGVAMPTQT SERWIADGNAVKEGLEAAGYEVDLQFANDDIPTQTQQIDQMITNGATILVIASIDGTALS SQLDTAGSKNIPVIAYDRLIRDNENVDFYVSFDNFKVGVAQGNALLYGLGLTDKDGKKLD NAPKGPLNIELFAGSPDDNNAKFFFDGAMSVLKPYLDDGTLVVKSGQTSFDQVAILRWQQ EVAQKRMEDLLTSTYGGGSEPLAGVLSPFDGISRGIITALQGAGYGPAIKDGLPIVTGQD AEIASTKMINDGIQQSTIFKDTRTLAAQAVTVIKAMAEGKEPEANDTTTYNNGVKVVPSY LLEVETIYADNLKEKLIDSGYFTQADVDAGVVKK >gi|292821672|gb|ACYT02000012.1| GENE 67 72293 - 73801 1732 502 aa, chain - ## HITS:1 COG:TM0276 KEGG:ns NR:ns ## COG: TM0276 COG2160 # Protein_GI_number: 15643046 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Thermotoga maritima # 9 495 8 490 496 517 53.0 1e-146 MTSFYEDREVWFVTGSQDLYGEETLAQVAQQSQEVVRLLNESDLLPAPIVWKPVLKDSDA IKRAMLKASADDRVLGVISWMHTFSPAKMWIRGLEVLRKPLLHLATQANVEIPWGSIDMD FMNLNQAAHGDREYAYILTRLGLARATVVGHASQDSTRRRVANWVRSAGGFAATNELRVV RFGDNMRNVAVTEGDKTEAERRLGVSVNTWSVNDLVAVVDAVDEGAIDALVAEYCEGYDV APELAPGGDRAESLRYAAREEIALRTFLEERGAMAFTTNFEDLGGLRQLPGLAVQRLTEA GYGFSAEGDWKTAVLVRAAKVMGEGLPGGASLMEDYTYNLVEGQEMILGAHMLEVCPSLT NARPRIEIHPLGIGDREDPVRMVFDAAPGRGVVVAMSDMRDRFRLTANIVNVIEPPQPMP KLPVARAMWIPEPDFYTSVEAWLTAGGAHHTCMSTQIEPEVWENFAALAHMELVVIDELT TRRDFASGVRWNQAYHRLAEGL >gi|292821672|gb|ACYT02000012.1| GENE 68 73821 - 74534 677 237 aa, chain - ## HITS:1 COG:TM0283 KEGG:ns NR:ns ## COG: TM0283 COG0235 # Protein_GI_number: 15643052 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Thermotoga maritima # 18 236 45 253 254 173 40.0 2e-43 MDRRNPDTWTPEFAREIERVREYVATLHAELPRWGLVVWTAGNVSQRVRGEAEDGSQDLL VIKPSGVSYDDLNSEAMVVCDLDGNLVLGEGAPSSDTAAHAYVYRHMSDVGGVVHTHSTY ATAWAARGEEIPCVLTMMGDEFGGPVPVGPFALIGDDSIGRGIVDTLRESRSPAVLMRNH GPFTIGRDARAAVKAAVMVEEVAKTVHVARVGGPLVPIEQQHIDSLYDRYQNVYGQH >gi|292821672|gb|ACYT02000012.1| GENE 69 74627 - 75640 696 337 aa, chain - ## HITS:1 COG:lacI KEGG:ns NR:ns ## COG: lacI COG1609 # Protein_GI_number: 16128330 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 6 332 2 329 360 168 33.0 2e-41 MSRNGRPPSMADVAEMVGVSHQTVSRVVNGKGRVSPRTRERVQAAIEQLGYRPNSVARAL VTARSGIIGVVTTTSAHFGPSSMLVALEVAAREAGLFTSVVALDRFGPDDVASAFDHFSS LAAEAIVVIAPVDSLAETVASQGASVPVVAVSGGRTFGRGVSVVHADQRGGARALAEHLM TLGHRDIACVAGPQEWFEARERVAGWREAMVQAGLPMREPLVGSWEARWGYVAGQNIVED DLPDAVMCANDEVAVGLLRAFAEAGVSVPGDVSVAGFDDVPMAAYAGPGLTTVRQDFADL GRCALEAVSYALDGESVDTYVRPTRLVVRGSTGVCPR >gi|292821672|gb|ACYT02000012.1| GENE 70 75806 - 77746 2558 646 aa, chain + ## HITS:1 COG:Cgl2307_1 KEGG:ns NR:ns ## COG: Cgl2307_1 COG2233 # Protein_GI_number: 19553557 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Corynebacterium glutamicum # 3 446 19 453 453 481 60.0 1e-135 MASSPSSAPHPVNQVPPFGKLTILGIQHVLAFYAGAVVVPLVIASGLGLDNHTLVHLINA DLLTCGIATIIQSAGIGRFIGVKLPLIQGVTFTAVSPLIAIGAAATPPGADPTTGLATMY GSIIAVGLIVFLVAPFFAKLLRFFPPIVTGTLLTVMGTTLLSVSAGDIVAWADQATGDAA KATATFEALGFAFGTIAIIVIIQRLFKGFIGTLSVLLALVIMTGVAFVMGKTDFSGVGEA SWLGITTPFYFGIPKFSATALLAMIIVMAVTAVETTGDVFATGEVVGKRIAPRDIANALR ADGLSTLLGGVLNSFPYTCFAQNVGLVRLTRVKSRWVVTAAGVFMIILGLLPKAAAIVAA IPSPVIGGASLAMFANVAVVGIQTLAKVDLRDNRNAVIVSTSIGLALLVTLKPGIVSVMP SWLQIIFGSGVTIGSLTAIILNILFFHIGRQASPDVAVVDGKKINLDDVNAMDRDQFVAT FASMFSSHTWPVERAWESRPFASVSELRSSFEDAVLAASPEEAEELIASYTDVVSLVLDG AGDEQASSDTSSLSVGEVSSEEAEELRALAAAYREKFGRPLVICVDNVVDRKHLLSSGWR RVEHSPAREARFALGEVIDIADLRFDQLVADANPMRAAWDAGFERL >gi|292821672|gb|ACYT02000012.1| GENE 71 78611 - 82588 5108 1325 aa, chain - ## HITS:1 COG:SPy2010 KEGG:ns NR:ns ## COG: SPy2010 COG1404 # Protein_GI_number: 15675796 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 196 840 120 714 1181 184 27.0 1e-45 MTHHSTPALALAAALALTGVSVPALAASPQPGGVLPANPTHASSKDTQSGTRVEDALLSI RQAEAGGATLPDASSAQEAADDTPTTIIVQLEDGTAGSSTQAMRDDVKARIASAVAGIVP GAQVTTVREYTNAFVGFAIEAPGSALSAIQKVEGVKTAFNEGVHKPMDTGAEGSGAPVLK NASSLAMTRANEVVLKGDRQVIEVIDSGLQTDHDAFAGSMDGVDVRMSQADVQAFAGKLP HGGAGTYVNSKIPFAYDYADNDADVVPHSEKDLSHGTHVTAIAAANADVLQGTAPHAQIV VAKVASDEDGSMLDSALLAALDDALVIKPDVINLSLGDDSGMSSDAGSVFAGVYEKLAAA GITVNAAGGNAFSNAYGNNSGQNKPFATDPDTGTLGEPASYKSTLAVASVDNQEALSYVS LGDRTIAYRTALNGQGEAVRGLRDVPEKTYRIVDAGAGGTDRLEQYAGTDLSGVIVLEDR GGTDSRDGSAMTEELKARNLTALSPAPAALMVADTDEAYTPYQAILGSTTSMPTVTITKR DGEAIREALAAANGADVTVTVTHSGIVLASNNPTASEFSAWGVAPDLTLKPEIAAPGGDI MSAYLGNEYQRLSGTSMASPQVAGISALVRERLAGDPAFSGMSAEQKNAVVTNLLMGTAH PLIDVELSDGTYYSPRRVGAGAVDALAATTATVYPTVVGAADPSRPKADLGDGTKGWTFQ VQLTNLSDAAYTYTLGGQALSEMVEGGLFLEHSQNWVGAGISLTFSGDGVAEAGDAQQIT VPAMSNATVTVTVTPESEFAAFASENTPKGTFIDGAVTFTSEDGTPSLTVPYLGFYGSWG APDVFDGKWSDDETTPVHVFRSALVNAHSSIPLGALNPLSDKQDSNLVTTINTQRLITSR AKWAGAPDRIAPMTGMLRSVPSMSVTYRNSAGELVRSYTINRVRKSLYDLETGWTKPGEF AGEEPFFDGYDQSGNELPDGAYTVTIEAATDGPSSHTHQMSYEFTLDTQAPVISNLTVSG EGDARTVSFDVTDASPVAGIDFHEDADGTWYYRKLVEDDGEILADGTHRYHFAVPVSELK AAWAQQGRTDEAPVTPYLFAWDWGVNPAKQEVRLQGDPTPAPTPAPEPTVDPTPAPEPTP APEPTPAPSVDPSPVPAPQGGAWISDSVGWWYRYADGSYPRNGAALIDGATYRFDASGYM RTGWVSEAGSWFYHDASGAQASGWVKDGASWYYLDPATGRMVTGWLLDGLTWYYLTPGSG AMATGWVKDGSSWYFMHSSGALTTGWLRQGSFWYYLSTDSGAMYTGGHWIGWKWHYFAEN GEWNG >gi|292821672|gb|ACYT02000012.1| GENE 72 83032 - 85713 2983 893 aa, chain - ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 59 476 483 907 1734 159 33.0 3e-38 MSHSKFAVLAFALAGTLSLTLLGVPAAHAVSADAAGQANAAASLNADADGFIINADGVLV GYTGGASKVRIPEGVAEISANAFNGTSLTSVWIPASVRAIDDYVFSGQPLTEVTFQDDDA HPSQLETIGDRAFANTALEHITLPRSLTMAGLETFSDMAKLRSVHVGPKVSAQGLFAAFA RTPLLESIDVDDANQNYQSLDGVLYTKGLTHLATYPEAKNAGGSYAIAEGTSTIDEGAFT SAQITSVTLPSTLRRVEKAAFASSQVTSLTLPDGFESMDDMAFWYMPKLERVDLGGTTAV SDSAFRYDKTLAEVNFRSDLGRLTSVEDYAFEAATITSVTVPESVTSIGKFAFSDNSYLT RVHLGSGLTSIGEGAFVGATSLASLSVAPANPVYSVDSGVLYQKSIGGRILVLSLPTNGA TEFTVPGGTVAIADYAFSKNMSLRRAVLPEGLTTIGFGAFDGCDNLTDIVIPDSVTVARG LVNNGLDTVELGSQVTELWMTPRDTTTPRHIIVRGGNDGEFYYEGKATNGRPDSAYFGEG MTSFTFWFDTPRVLVLPSTVKELKLAEDMAADLKADTAVYVAAPRGSKAWTLTEAAMKEA GYNTAALFEYTSPQVAVSGDGINEAGSGYTLTTSVSTPTTVKVSAQAGVLGTRQMRVVQI EPDGRETVLQDWAAMSDSSDTATSTGSFSWTPASDGIVARIDVRDESKLVSSTTVTFKAS SASAPAQGHWVRSGRSWQYHYADGTRATSTSLVVDGHTYRFTAKGNMRTGWFFEGGVWYY HGPSGEQASGWVLDGSSWYYLNPATGTMQTGWLKDGSSWYYLSPATGMMQTGWVKDGSSW YYLNPTTGKMMTGWLKEGGAWYYLKTGSGAMATGRLRIFWTWYTFSETGQLIS >gi|292821672|gb|ACYT02000012.1| GENE 73 86187 - 92855 8496 2222 aa, chain - ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 1968 2220 466 705 744 195 42.0 7e-49 MSQRTTSALVLLTAGTLAMTAVTTPAAFAANSREESQSGVPAPASSVDAQSGAPQSGAAD EAGAENPTTTPETVPTDDTPTTIIVQLEDGSVGIPWYQRVFGLSSSTKHETVKERIETSV EAVVPGADITDVRDYTHALDGFAIQAPASSLGAIKATEGVKAAFIERHHKPMVVEGDAGA LGAEAVDPALQNASSLEMTRANQTTQKGDRQVVEVIDTGIEATHQAFSGSMDGVDVRLSQ GDVEALVGKLPHGKTGAYLNNKIPFVFDYADNDADVLPKSSKDLSHGTHVAAIAAANAAD LQGTAPHAQIIVAKVASDKDGSIPDSTVLAALDDAVVIKPDSINLSLGEDAGMGTEAGTM YAEVYKNLANAGVTVNAAAGNSYSSAYSNYSGKNKPFATDPDAGTVSEPASYSSTLAVAS VNNQDALPYLTVGERQVVYRKSRGLKDAVVPSLLDIPEATYTLVYAGIGDAAALSKLIAE HPGDLSQVIVLEDRGGSDSATGADMTHEAKVKGLTQLTSKPAALIIGDSETVENPYVATI EATHTMPTVTITKKEKDALIEAIKASESGSINISNPHAGLKLASTNPSISDFTSWGVTPD LKLKPEIAAPGGNIVAAVLGNTYRSMSGTSMATPQVAGIATLVRQRVNNDPAFAGLSEVD KAAIVTTLMMGTAHPLLDIDQNDGTYYSPRRVGAGQVDALAATTTTVYPRVVGAENPWRP KADLGEGTTGWTFQVTLTNVSDTAHTYTLGGQALSEIVEGGLFTEHSKNWAGQGIDLTYS ADSVTVPAKGTATVTVTVTPQGAFASYANAKAPKGTFIDGAVTFTSADGQPDLTVPYMGF YGSWGAPAVFDGKWYDGTTSTAHACSSTLINPATEVPLGALNPLAGQEIDDVRAVDPAYF IMSRSALPEAPSRILPRTCLLRNSPKVTYTYTNEAGEVVREYTFERARKSLFNYHASKVE PIESQEGNNPVFDGFDKDGKELPAGRYKLTIDAASVAPSSVASQLTWDFTLDTEAPLISN LTVTGEGDERVVSFDVTDNSPLAGIAFSESPTSRRYYDEKEAVGANRQADGTYAKHYEIK WADLIDRADSSDPATAYLFAWDWGKNQARQVIRFSTIPMTSLSLTPQDSEVVAGETVALS PSYEPANANVTDLVWTSSNEAVATVNDNGEVRTLAAGEATITATDASQPTLSASARIRVR TISEDAGIELADTQVTLKVGEIAPVKAYLAPSLKDRAVTWSVEPADLATVAADTDTRKAT LTAGDHAGSGTLTATVTTEAGATKTASIAVTVRAADADDFEINEAGVLVKYKGSATEVTL PDTVTSIGERAFASTTVEHVTVPASVRSIGLEAFIYSSLKKITFVDDETHPAQLTMIADR AFANTSLEAIELPHSVVTMGAEVFDYNSALTTIKLGPNVAADSVTSGYAETAALTSVEVD PANPNYESVDGVLYSKDHSRLILYPAAKNPGGAYTVLDGVATIAPKAFQKAGITSVTLPD SLRTIKDEAFRLSALTEVTLPEKFETVGTCAFCSADKLATIDLGGTISLGGSAFESTSAK NGVNYRPELGRLTTIGDFAFSRTAQSSVTLPDSVTAVGEQAFSESTALTSFHIGAGVTSF AETALYNDRKIATLTVSADNPVYSAEHNVLYRKTGDGLHLMLSPAANTLTDYTVRAGTVE IGATAFANNKTLTRVVLPDGLKVIGDDAFAGTTALTELVIPESVERSSGVTGNSLELVEY GSKVTSIRMEGSWVPMPRRIVVRGGVDGSFVYDGRPTNGRRQSAYFGEGMTRVSFGVDVP RVLVLPSTLTRLDLEPELSDEKKDDTHVYVAAAEGSQAWNVAKDALEAAGIDPSHLHTYT GASMTLAGTNIAEAGGSYTYTGEIGASVDVTAEVAGGIAGTQQVRAVQIGADGTETLVRD WTTVTDSGDRAAASSVTFPWTPSAADVSLRVQVRDASYLTSTLMIKLPGTPDPTPAPEPT PAPEPTPAPSPDPTPAPSPDPTPAPEPTPAPAPQDGQWVSDSVGWWYRYADGTYPAGRTV QIGNSIYRFGADGYMRTGWASEDGAWYFHNPSGAQASGWVKDGSSWYYLNPTSGQMVTGW ILDGLTWYYLTPGSGAMATGWVKDGSSWYYMAPSGALTTGWLRQGSSWYYLSTDSGAMVT GWLQRGSSWYYLHPAGGAMATGWLQLDGAWYYFDPSSGVMATGSQRIGWRSYRFADSGQL MN >gi|292821672|gb|ACYT02000012.1| GENE 74 93162 - 93479 667 105 aa, chain - ## HITS:1 COG:lin0240 KEGG:ns NR:ns ## COG: lin0240 COG0393 # Protein_GI_number: 16799317 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 105 1 105 110 97 49.0 5e-21 MLVVTTPTVEGAPVKQYIGMVSGEAISGVNMFKDFGANLSNMFGGRASQYEEEIGGASAT AVNEMCARAQAMGANAVVGVKVDYFTAGTNNGMLAAIATGTAVIL >gi|292821672|gb|ACYT02000012.1| GENE 75 93838 - 95253 759 471 aa, chain - ## HITS:1 COG:no KEGG:jk1246 NR:ns ## KEGG: jk1246 # Name: not_defined # Def: hypothetical protein # Organism: C.jeikeium # Pathway: not_defined # 66 448 80 422 447 72 22.0 5e-11 MSDFQLEIGDSISGLLTDGVEGAPWVGATLKVDRRRGLLVEVPYLQGADDGQFEHVRHWF ESRKAPTIMELLTPKGAVGLFGIVWVGYRAPFGGWKASVGKLQPSVAVLESRNGRFEDPL VIDEVYSWIDGLHGWSGLSAVSIEPSVDERNIANELTLTVKSELVLEWVQGNANMRIQSI WSEVSESDGYQRKVLIADDVSLISSFPSGPRGFEDHYREQQKVRHFMTFMYGQQLFFRRH ALRDERYSFMLDGREDLIKPRIQLISCRTFADSVRDVPSRDKLNDLLANFHAVGADGMEA WCVEYEKWERFILPSVNVLGRDGVFAEDVILSTSMSMEAAGELIGECDGEECLKGRGRNL PVALCIYRCLHVLELELPGEFSGMVALSRAIANTYNAIKHSSRGSFPDGREVRIVCDLNK LIVRLLALHVAKVDLNAVIRSYVSLALDNIVAKMSWWSMSVDEDGKWRYEV >gi|292821672|gb|ACYT02000012.1| GENE 76 95502 - 96287 589 261 aa, chain + ## HITS:1 COG:CAC1450 KEGG:ns NR:ns ## COG: CAC1450 COG0596 # Protein_GI_number: 15894729 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 14 249 12 240 244 84 23.0 2e-16 MRMHVYGPCGQDCPAVLIIHPMLSSASSMKASLCDHMGSGLRFLVPDLSAHGDEASAPYV SAAAEAAAIHQWLVSNGMSRLSLGFAASLGGVILFELLRFPDLSFDRLFIEGVSFYSGGP VARVGGAVLSRVMVAKHRKAVRDPEAGARKLQRLYGEEAARSMVASFAAMSEDSIRAIVR DCSHVSLPPLSPAIQRRCTFTYGEKDSDLRLARRMIPRLYPEAELRVWPGWGHCERMSRD SVTYGAMLRNVALGSASTDRS >gi|292821672|gb|ACYT02000012.1| GENE 77 96271 - 96873 699 200 aa, chain - ## HITS:1 COG:DR0026 KEGG:ns NR:ns ## COG: DR0026 COG0500 # Protein_GI_number: 15805067 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Deinococcus radiodurans # 3 137 15 145 269 82 37.0 5e-16 MIWDRVAPLYDLAVNALNRRVYDGTGDAVARLIRPGDTVLECACGTGAISAAIAPACARV VATDYSEGMLKQARKKLAKHSNVTVEQADITDLRYANDSFDAVVAGNVIHLLPEPGDALK ELKRVVRPGGTIIVPTYVIPKKRAYTMFLSVISRFGVHFQEHFDPVSYRAFFERMGCMGV TYRVVRGRIPCVIASFTNDQ >gi|292821672|gb|ACYT02000012.1| GENE 78 97032 - 97397 388 121 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11240 NR:ns ## KEGG: HMPREF0573_11240 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 45 117 20 92 101 61 42.0 8e-09 MRWATKSTWFRIAVLFGIYLLVPAAWFSLSRVSDSMEIVKSLVFLILLAILPILAMGFGA WDGVKEGFSLLWLLAPFVCFLAPMYLFLNDSALIYGVGYSLLGFGAHCVGAFIHARSSRR M >gi|292821672|gb|ACYT02000012.1| GENE 79 97521 - 97700 281 59 aa, chain - ## HITS:1 COG:no KEGG:Jden_0156 NR:ns ## KEGG: Jden_0156 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 1 49 1 49 59 62 57.0 5e-09 MCRPTTCEVCGKTTWKGCGKHIDSVKEKVPVDQWCDKDHSDEEYAAVEKKRGFFGSFCK >gi|292821672|gb|ACYT02000012.1| GENE 80 97793 - 98098 280 101 aa, chain - ## HITS:1 COG:no KEGG:Xcel_1970 NR:ns ## KEGG: Xcel_1970 # Name: not_defined # Def: protein of unknown function DUF156 # Organism: X.cellulosilytica # Pathway: not_defined # 4 100 16 96 97 64 47.0 1e-09 MATQTQIVNRLKRARGQLDALIEQLESGDGNCREVLTQFAAVNSAMKRASYLAVATIMSQ CAQEVVGSRDEADPESARTESFVAADRVTMDELEQLFLRLT >gi|292821672|gb|ACYT02000012.1| GENE 81 98108 - 99823 2062 571 aa, chain - ## HITS:1 COG:L194050_1 KEGG:ns NR:ns ## COG: L194050_1 COG0446 # Protein_GI_number: 15672768 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Lactococcus lactis # 17 462 4 447 456 347 44.0 4e-95 MRLKEQSVETESERNMRVVVVGGVAGGMSAAARLRRRDEGAEIIVLERGSYVSFANCGLP YYVGGEIEDSAKLLLHTPQSLKAALNLDVRINSEVTAIDLDAHSVTVANSDTGEAYTLSY DYLILSPGALAARPPIDGLDSPRVHTLRTVDDALALREASGTRAIVLGAGFIGIEAAEAL AARGFETHLVELAEHVLPPLEVEMATLVTQELRGLGVHVHAGVAAQTIAHADNNDVVTLS DGTVLHADVIVLSAGVRPDTAVVEAAGIQTRRGYVVIDDHGRTSADDIYAIGDGTIGRDH DRPVALAGPANRGGRLIADAITDAERGEATARPIPSPQGTAIVRIGSLTAAMTGANRQAL DASGTEYFTVHTHANQHAGYFPGAQPVHILMHVGAGGEILGAQAVGTDGVDRRIDVIATA MRAGLKAADLIDLDLAYAPPYGQAKDPVNQTGMVAHNVATGELILTGPDTLTEDMPVLDV RTPGEYAAGHMPNSLNIPHTQLRDRLDEVRAWVDENAHEQPFVVMCAAGVRSWIGYRIVR AAGFDVTMLSGGIQTLRAWLGDRAATVLVKE >gi|292821672|gb|ACYT02000012.1| GENE 82 100025 - 101257 548 410 aa, chain - ## HITS:1 COG:MT1076 KEGG:ns NR:ns ## COG: MT1076 COG3328 # Protein_GI_number: 15840477 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 404 22 429 436 462 59.0 1e-130 MTAPRIIDPAGLLGEALSQASPDLMCSLLQHVINALLSADADAVCGASGVNKIRNARPSA MGIATGPLDTRVGTIDVAIPKLRSGTYCPEWLLQRRTRSESAVITVVADCYLAGVSTRRM DKLVKTLGITGLSKSQVSRMAADLDEHVDQFRNRPLHDAGPFTFVAADALTMKVRKGGRV LSCAVLVATGVNNDGHREVLGVRVSTSETAAAWKEFFADLVARGLTGVRLVTSDAHLGLV EAIAANLPGATWQRCRTHYAAHLMPSPPKRYGPPSQRCCTRCSQPDAASVNAQYDRLLNY VHDKLPAVCDHLDHARADILAFASFPTGVWTQIWSNNPNERLNREIRRRTDTVGIFPNRQ AIIRLVGAVLAEQNDEWAKDRRYLSLDVLTKSRLTPQPTQQEDTPLHLSA >gi|292821672|gb|ACYT02000012.1| GENE 83 101317 - 101742 125 141 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAPITSNAPTTTRLHHYAGHYSNVMVHGARTAGHRSKLASAPAGTGEETTIWIAYDILD RLISYPELILLSRTAFPIQNASPHFLSVGKTLTRQQKTPGFQRKPGVGWWRWGESNPRPI AGPEFFSERSLRLYFSAPSIA >gi|292821672|gb|ACYT02000012.1| GENE 84 102118 - 104322 2497 734 aa, chain - ## HITS:1 COG:MTH1858 KEGG:ns NR:ns ## COG: MTH1858 COG1511 # Protein_GI_number: 15679846 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanothermobacter thermautotrophicus # 1 734 1 631 631 239 26.0 2e-62 MRTIWAIYRADLRRAHRSLIASVVVFGLVVIPSLFTWFNVAASWDPFGNTKSLRIAIANT DAGYKSDLVPLRINIGDSVVSALRKNDNFDWVIDSEDAAIEGTRSGEYYAAIVIPSDFSR EMLTFFDGGASSAPMTYYVNEKKNGISPKIAGQGAEAVSAQVNQIFVQTLSEVALDTATS VGGALSAPTAVNTVTALDNRVQTVASRLRTAADSADAYASLVGSSVTLIDSTATLVDGLG SAKGPAQSAVSSAQAGASGLGSAASAAVSSVSDAISSSQSSLSSLSSAVESVYANGSTSA SDAASTLRSQASVLDTQATSFTSIKTTLGALPGSPVSQSSLDRLQGASDRLTEVANGLRA AASELDSKVANAEAGHASVNGLIAQARSAVDGLSSDYETNLRPQLESLASTLASAQSSLS AARTSLEGATSTASNGSGSAREGLTQLRDNLTGAATSLREAAGKLDSLHASISEALASGD LTTLGTIIGNNPEALAAAIAAPVGVEKTPVYPVANFGSQMAPLYTILALWVGSILMVVSL RSDVTDSNVAEGLPEGHPLRATLTAKPVGLAAGYLGRYLIFGTIALTQATLVGLGDLYFL KVQHAHPLQFMGTLWLTAVVFSFLLYTLIATFGNAGKALGVLLLVLQISGAGGAFPLAIL PSFFSSISPFLPATHAITALRASIAGYAGHEYADAMWFLASFILFAAFLGLALRPLLVRK NRRMVEKLESTKLL >gi|292821672|gb|ACYT02000012.1| GENE 85 104319 - 106964 2827 881 aa, chain - ## HITS:1 COG:MTH1858 KEGG:ns NR:ns ## COG: MTH1858 COG1511 # Protein_GI_number: 15679846 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanothermobacter thermautotrophicus # 9 701 24 631 631 263 30.0 2e-69 MRVLAAWIVIIGMAFVPALYAWFNIVGFWDPYSQTSHIRVAVANEDEGATKDQIGTVNVG AMLETQLKQNDQLGWYFVSADEARAEVERGDSYAAFVIPASFSRDLTGIVDGTYVKPNIQ YYVNEKNNAVAPKITGAGATALDRQINSAFVSTVAKVLSEKASEAGVSIANDADQKRSEV STSVSEASAKLGSASQTLDGMGEKIDAAKASVASARTTLSDLDAAVSEMSTSLDQADQLV SDSRTSLGSFSSQMGGALDGLSSNAASALAGVSANAGTLDGAVQGASGRVGGLLTEGTSI NDSVGDVLAELNALGIGNLPAAGTALTDLTNQNTALSTALGSLTTLNSDLSATSTSISNA LTSASDASAAVSASVTNARSGVSAQLPAIFSALDDFSSASSSMRGSLDTLRSQREQVSGL LDQLDSLLDGAKTATQTSSTNVAAIKTDLDSVATDISSLSSSNTLRDLADSLGVNAESIA SFMASPTQIETKAVYPVAAYGSAMAPLFTNLALWIGAFSLVLLLKLDVDEEGIGPTSSAA KYMGRWMLLAFFGVIQGLVVSIGDLIIGVQTVSRPAFVGMAMIISLVFVSIVYMLSTCFQ HIGKGLCVIIMVMQIPGSAGLYPIEMLPSFFRFLHPLFPFTYGINALREIVAGFYGHTYL SCLAVLGAEALVAFAIGLALRPFLVNLNAMITRDLASSGLFLAEATRVPSSRYRLSQIVA ALADHDGFQRSVSGRAARFERRYPTIRRAAIILGVIVPVTLAVLSVANVAEVPIILGAWI VWVLLVITFLIGLEYLREALARQQLLGAMDEQDVRSLLTRRVQGARSRIALGAAAVGASI SSALASSLGERGGEDTDEAAPDLVDEDGAGEASEAAKGSEQ >gi|292821672|gb|ACYT02000012.1| GENE 86 107028 - 107555 1011 175 aa, chain - ## HITS:1 COG:Cgl0781 KEGG:ns NR:ns ## COG: Cgl0781 COG0691 # Protein_GI_number: 19552031 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Corynebacterium glutamicum # 13 171 2 160 164 159 50.0 4e-39 MPKEWKKPKPTEGQRAKAASDAKKTIARNKKARHDYTIEDTWEAGLALMGTEVKALRMGR ASLVDAWVEINGGEAWLYGANIPLYSQGSWTNHAPTRKRKLLLHRAEIDRMQDRVAAKGY TIVPLELYFIGGRVKVEIALAKGKQEWDKRQALREKQDQREAERAMRRYVKQARR >gi|292821672|gb|ACYT02000012.1| GENE 87 107642 - 108916 1763 424 aa, chain - ## HITS:1 COG:VC0630 KEGG:ns NR:ns ## COG: VC0630 COG0739 # Protein_GI_number: 15640650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Vibrio cholerae # 295 420 271 392 433 92 42.0 2e-18 MSLSSHRPGRRALRAGALALAVASFAAMSQALPARADDERDAAANAAAEAEATVNALQSQ LEGIDASLAQVFIDLQALNGQIPVAQAAYESATATYDQKTREHATIMGELSAAQGEQSRI GQSLNQATTQAGDAQRAIADLVRRKYREGNVDPVAVALTAGGTESITDRAAAADMALRTE SQTMTAALDVSSSQRTQATRQDAITERITDLEVKAAQAEEEAKQAKNEADAKLTELNSLK EQAQAKQAEWDAQKGQVEASLSQAEADYQARSAELAAIDAANRASGASYVSASGFRNPLD IPIVVTSPFGMRYHPVLGVMKGHSGTDMAADCGTVIRAVASGYVNAVSSDVSAGNYVDIN HGLVGGNSVITEYLHMQAQYVSPGQYVNAGDALGEVGSTGYATGCHLHFGVLQNGSYVEP MDYL >gi|292821672|gb|ACYT02000012.1| GENE 88 108922 - 109836 1368 304 aa, chain - ## HITS:1 COG:Cgl0780 KEGG:ns NR:ns ## COG: Cgl0780 COG2177 # Protein_GI_number: 19552030 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Corynebacterium glutamicum # 1 303 1 299 300 118 27.0 1e-26 MKLRFILSEVGKGLSRNRAMSVAVILVTFVSLLFVGIAGLTQMQVSKMKSEWYDKIEVTI YMCAINDAAANCNATEATDAQIDAVRQKLASAEMTPYVANVYEETKEEAYENFQRLNGNN ALTQWTTPEMLQFAFRIKLVNPEQYSVVKEEFSGTAGVSEVRDQREVVEPLFRVLGAART AALGLGAIMVVAAILLISTTIRLSAMSREQETQIMRYVGASNLFIQAPFMIEGALAALVG AAFAIGTLFAGVHFIVQGWMAPSFRWTNFIGMGEVAIMTPILVLAAVALAVIASAFSLAK YTKA >gi|292821672|gb|ACYT02000012.1| GENE 89 109842 - 110531 290 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 217 1 218 245 116 32 9e-25 MIRFEDVTMVYTPGAQPALDHVSLEVEREEFVFLVGKSGSGKSTFLQLVMREIKATSGKV WVLGKDVSKLSTWAVPKLRRQIGTVFQDFRLLPSKTVYENVALAMQVIGKPRHAIETAVP DALELVGLSGKESRLPHELSGGEEQRVAIARAMVNRPELLLADEPTGNLDPETSLGIMRL LDRINRTGTTVVMATHDADIVNQMRKRVIELASGDVVRDQNRGVYGAGR >gi|292821672|gb|ACYT02000012.1| GENE 90 110724 - 111845 1513 373 aa, chain - ## HITS:1 COG:Cgl0778 KEGG:ns NR:ns ## COG: Cgl0778 COG1186 # Protein_GI_number: 19552028 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Corynebacterium glutamicum # 1 372 1 368 368 411 59.0 1e-114 MAIEFSEEIPSLRTTMENIIAVVQPDKLREQIAELNEKAAAPDLWDDPSAAQAVTSALSH RQSELDRITQMSERIDDLEAMVDMAAEDPDEGADILAEAEADLEKLRKDLGDLEIRTLLD GEYDERNAVITIRSGAGGVDAADFAEILLRMYLRWAERHGYPTKVMDTSYAEEAGLKSAT FEVQAPYAYGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVIPLIETTDHIEIPESELK VDVFRSSGPGGQSVNTTDSAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLQSRLLVLRH EEEQAKKKELAGDVKASWGDQMRSYVLQPYQMVKDLRTEYESGNPQSVFDGDIDGFINAG IRWRKNEQKAAQD >gi|292821672|gb|ACYT02000012.1| GENE 91 111982 - 113343 2214 453 aa, chain - ## HITS:1 COG:Cgl2027 KEGG:ns NR:ns ## COG: Cgl2027 COG0334 # Protein_GI_number: 19553277 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Corynebacterium glutamicum # 13 453 7 447 447 591 65.0 1e-168 MSSFDTSRLSPALASVFESVQRRDPAQAEFHQAVYEVLLTIAPLAERHPEYADLAIIDRI VEPERQIQFRVPWADDKGNIHVNRGFRVEYNSALGPYKGGLRFHPSVNLSIIKFLGFEQI FKNALTGLPMGGGKGGADFDPKGKSDAEVMRFCQSFMTELSRHIGPDTDVPAGDIGVGGR EIGYMFGQYKRLKNRFDAGVLTGKGLSWGGSYVRTEATGYGLVYFAAEMLAAKGTSFDGK RVVVSGSGNVAIYATEKAQQLGATVVAVSDSSGYVVDEAGIDVALLKDIKEVRRGRVSDY AAERPGAVFVADGSIWDVPCDVALPCATQNELPLSGVETLIKNGVQLVAEGANMPTTPEA IEALQAAGVAYAPGKASNAGGVATSGLEMQQNSGRTQWPFEETDAKLHQIMVDIHATTVA TAEEYGVAGDYVAGANLAGFRKVADAMIAMGLI >gi|292821672|gb|ACYT02000012.1| GENE 92 113416 - 113859 135 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189310|ref|ZP_06608033.1| ## NR: gi|293189310|ref|ZP_06608033.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 147 1 147 147 208 100.0 7e-53 MSEGEEGRVGILMCAGCAFVCLLLVVSIALTEVAMQDRRLVSCADALASAGVSGASASTV FAGGNLGVDEETASSRVDRALAGLSDSTCRVGDGVSVSWVSVSSGEVEVGVRAHPRVSLL PPVLRSAVVPELVRTSSARLRGVQGPP >gi|292821672|gb|ACYT02000012.1| GENE 93 113852 - 114250 270 132 aa, chain - ## HITS:1 COG:no KEGG:Arth_2668 NR:ns ## KEGG: Arth_2668 # Name: not_defined # Def: hypothetical protein # Organism: Arthrobacter_FB24 # Pathway: not_defined # 3 107 34 144 168 65 36.0 6e-10 MSERGDASVEFLGILVVVVIPVLYIVLAIGQVSAGAMAVDAGAREAARILAEDPDRTADA NHAVTLIVEDFGVNATPEVASTCENCQDGEGAVDVRVSVQVPLPFMPAWLGGLGVGVSSS ARAPVREVVARE >gi|292821672|gb|ACYT02000012.1| GENE 94 114247 - 114636 215 129 aa, chain - ## HITS:1 COG:no KEGG:Arth_2669 NR:ns ## KEGG: Arth_2669 # Name: not_defined # Def: TadE family protein # Organism: Arthrobacter_FB24 # Pathway: not_defined # 10 127 3 121 122 69 39.0 4e-11 MRWTRLRASEEGSEVVSTVLVQGLVVLVILLLLQLAFASHVRTMSVSAASEGARRGGLLG GDEDEARARTSELLDSLVGAAKDREIAVDRESDAGVDVLTVTVRTRLPLVGGLGPRWLTV RGRALVEGP >gi|292821672|gb|ACYT02000012.1| GENE 95 114608 - 114778 323 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507635|ref|ZP_02043277.1| ## NR: gi|154507635|ref|ZP_02043277.1| hypothetical protein ACTODO_00116 [Actinomyces odontolyticus ATCC 17982] # 1 56 1 56 56 96 100.0 5e-19 MKKLFLRKAPLGERGDVPGWVLITLMTAALVVLIWGVASERLVEIFNRAMDSIAGI >gi|292821672|gb|ACYT02000012.1| GENE 96 114794 - 115690 991 298 aa, chain - ## HITS:1 COG:CC2940 KEGG:ns NR:ns ## COG: CC2940 COG2064 # Protein_GI_number: 16127170 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein TadC # Organism: Caulobacter vibrioides # 124 294 185 357 362 68 28.0 2e-11 MNPWIMRALDLAVALVAGAGLVLILAAALARRPSFVDRVAQGRVQERPPSALVAWARRMS ASALDSLGSTSESVARRLSLAGMNPDVSVFRLRQAVAGVAGLVAACALVAARHASSLRAS FIPLCACALVGTLLGVAGMDRFLTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIE RVAGCAGGPLGAELSLTAGHIRNGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPL ASVLHDQARDQRERSLAALMEEGGRREIAMLLPVVFLILPVTVMFALYPGLIALDFTP >gi|292821672|gb|ACYT02000012.1| GENE 97 115690 - 116553 474 287 aa, chain - ## HITS:1 COG:no KEGG:Franean1_5825 NR:ns ## KEGG: Franean1_5825 # Name: not_defined # Def: type II secretion system protein # Organism: Frankia_EAN1pec # Pathway: not_defined # 29 284 28 284 286 202 46.0 1e-50 MIAIVCGLVFGIGLVLAVSPWFTPPPAWRPWGPWKRLCEDVARARIPGLTAARLIALSLG VAIVVALVILAVTGAWPVALIVSVGVAFMPYAWVVSRLGAHAKTVRAAWPEVIDAMVSGV RAGTALPQVLCDLADEGPVPVRFAFEAFSRDYSANGRFELALDTMKETVADPVADRIVEA LRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAARLGLAAPWVVLLLLSG GGASAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRLSTDPRNLGGA >gi|292821672|gb|ACYT02000012.1| GENE 98 116550 - 117764 955 404 aa, chain - ## HITS:1 COG:RSc0652 KEGG:ns NR:ns ## COG: RSc0652 COG4962 # Protein_GI_number: 17545371 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Ralstonia solanacearum # 28 370 62 405 453 226 37.0 9e-59 MEATTRALAARVREDLAASGVDAARDPRSVRLLIHRAIDRYAPDLLPTAREQVEADLMDD ICGLGPLQALMDDPSVEEIWINAASRVFVARAGVAELTSLILTDEDVRALVERMLHHSGR RLDLSSPFVDAMLAGGERLHVVIPPVTGSSWSVNIRKHIQRARTLDDLVSVDMLAPPMRD FLAAAVSVGLSVLVSGGTQAGKTTLLRALAGELPRSRRVISCEEVFELGLANWDHVAMQT RPAGAEGTGEITLRDLVRESLRMRPEYLIVGEVRGPEALDLLVALNAGVPGMATVHANSA REALDKLSILPLLAGENVTTGFVTPTLASSIDLVCHVERGVDGQRHVAEIMAVSGRVEGN RIETATLFRFDGRRCTRGRGGLDLHDRFATAGFDLASLLDWGPA >gi|292821672|gb|ACYT02000012.1| GENE 99 117908 - 119089 1518 393 aa, chain + ## HITS:1 COG:no KEGG:Bcav_2900 NR:ns ## KEGG: Bcav_2900 # Name: not_defined # Def: aminoglycoside phosphotransferase # Organism: B.cavernae # Pathway: not_defined # 5 342 19 354 386 187 41.0 9e-46 MTSRKSPLELAALATAAVPGMRVTALRPPTYSDELSTVTGIEDAAGHRWIVTCPHEEVSG PALEATSGILDRLGQAHDHDYIPFDVPRLAGQVKTSDGGTVYVHRDPGGTAPSDEDLDTD PLLPSSLGRALAALHNLPETVFSSIGLPSYTAIECRDRNLALLDEAAREVAIPAALWSRW ETALEDVSLWRFPSAPIHGDIQERCLSVKRGSLLAIGGWTSAHVGDPALDIAWVQATASD AFLDRFRETYGHERRATDLHVFTRAQLLSEIALVRWLVHGLHAEDSSIVEEARSMLDDLA KDLDGEPLLPSHASAMGARISLTPVESPSASPVEASKPTASAADETDNDAPSEDTVPVSR PASALKRKLAEGEVDPAAPTERLTLDPDGTLLH >gi|292821672|gb|ACYT02000012.1| GENE 100 119211 - 119603 527 130 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11069 NR:ns ## KEGG: HMPREF0573_11069 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 115 2 116 144 134 53.0 1e-30 MSPTYLLGLVFAIIILVMVFVKMRNSGLKERYGLWWYCIAFFTALLSIFPPILKWTALQL GVVVPLNLGFFLAGVVLLLLSLRFSVDLSRSDEDRRRLTEEAAILRLQVEDLQRRVDALE ASHRGDGQSH >gi|292821672|gb|ACYT02000012.1| GENE 101 119600 - 120355 772 251 aa, chain - ## HITS:1 COG:SPy0794 KEGG:ns NR:ns ## COG: SPy0794 COG0463 # Protein_GI_number: 15674837 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pyogenes M1 GAS # 11 234 4 224 231 157 34.0 2e-38 MSRPSAQSRLLIVIPAWNEEEVLGDVLEMVKAEKPSFADILVVSDGSTDATADIARAAGV AVLDLPLNLGVGGAMRAGFQYARRVGYEYACQLDADGQHDPREIETLIETASSEHADVVI GSRFAGKGNYHARGPRKWAMNLFSFILSRVCETRLSDTTSGFKLYGPRALSLFAHNYPAE YLGDTIGALVIAARSHLVVREVGVQMHPRAGGEPSHNPIKSALFLVQATMALAVSLSRPG EKVAPAPEENA >gi|292821672|gb|ACYT02000012.1| GENE 102 120356 - 121279 1401 307 aa, chain - ## HITS:1 COG:MT0348 KEGG:ns NR:ns ## COG: MT0348 COG1209 # Protein_GI_number: 15839720 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Mycobacterium tuberculosis CDC1551 # 18 304 1 287 288 439 75.0 1e-123 MSTTRDPHEDAPGSGGNMKGIILAGGSGTRLNPITLGTSKQLVPVYDKPMIYYPLSTLML AGISEVLVITTPHDAPSFHRLLGDGSQLGVNISYAVQHEPNGLAQAFVLGADHVGNDSAA LVLGDNIFYGPGMGAQLRRHVDPDGGAVFAYHVSNPREYGVVEFDEEFNALSIEEKPEHP KSNYAVPGLYFYDNDVVEIARNLKPSARGEYEITDVNRSYLEAGKLKVEVLPRGTAWLDT GTFDSLADATAFVRTVEARQGMKIGAPEEVAWRMGFIDDEGLRQRAEPLVKSGYGAYLLE LLEREGR >gi|292821672|gb|ACYT02000012.1| GENE 103 121423 - 122850 2127 475 aa, chain + ## HITS:1 COG:Cgl0332_2 KEGG:ns NR:ns ## COG: Cgl0332_2 COG1091 # Protein_GI_number: 19551582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Corynebacterium glutamicum # 195 473 2 269 271 229 48.0 7e-60 MAPTAKPLGITTTPIPGFLRIDLTVHGDNRGWFKENWQREKMVALGLPDFQPVQNNISFN DEVGVTRGIHAEPWDKFVSVATGRVFGAWVDLREGPSFGTVYTTIIDPGVAVFVPKGVGN SYQTLEPNTAYTYLVNDHWSPDARYTFLNLADETAAVDWPIPLERAILSDKDKAHPRMAD VTPFPAPAPLGRRALVTGANGQLGRELMRALPEAGFTVTGVDLPEVSISDAERVAALPWD DIDVVINAAAWTNVDGAETPEGRRATWQANSTGPAILAREATAHGATMVHISTEYVFDGT QDVHIEDEAPSPLGAYGQSKAGGDAAVASTPKHYIVRTSWVVGDGKNFLKTMVSLADQGT SPSVVSDQVGRLTFTSDLAKGIIHLLTSDAPFGTYNLSGEGPVMSWAQIAKRVFELCGRN PEDVTEVTTEEYFAGREVAPRPLSSVLDLTKIKAAGFTPEDSSQRIDSYVASLRG >gi|292821672|gb|ACYT02000012.1| GENE 104 123402 - 125450 2807 682 aa, chain - ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 257 479 525 744 744 185 42.0 3e-46 MRSSWRTIVAGLSLALGAAAAALVPPAHAAGITIAIDPGHGGSDPGAVANGLREKDLTLA VSLALKEELESYDGVRVVMTRTTDTRPSENISTDLSRRVEMAAAEDADALVSIHFNSASP IAKGAEVWYANSSSYNYGTHTQGRTLSNAIQKQLTGLGLADRGIKTRDNPYYNYPDGSTG DYYAIIRQAREENMTGVIVEHAFLTSTTDAALLRNESFVRSLGVADATGIAQAYGLSKGT WRAAGDSWSFISNGVAKTGWFSAGGRWYWAGSNKQTIRGWSTINGRRYFFDDSTAMVTGW KKESGKWYYLHPDGDMATGWVKVAGSWYYMNADGVMVTGWLKDGNNWYWLRADGAAAIGW TNVDGAWYLFEDDARMLTGWQLTEDDNRWYYMRSSGQMVTGWLLDAGKWYYLDDEGAMMT GWTKVSDTWYHLNSSGAMSTGWLLDGAWYWLDPNSGAMATGTVTVDGRASNFASSGAWLG YADGGDAQAASRSASVTNASGQRLIMSAPTASRADIIDAMEDAWDQAGYSYPSALAAGGA PTIRDFASIVYDEAVAEGVSPELVFVQAMKETGWLRFGGDVTVNQYNFSGIGAVGGGAKG ASFPDVRTGIRAQVQHLRAYADSSVTTASLANAVVDPRFTYVRKGAAPVVEYLGIQENPN RTGWAAAKNYGYDLVSMMKAYF >gi|292821672|gb|ACYT02000012.1| GENE 105 125664 - 126845 1226 393 aa, chain - ## HITS:1 COG:alr1668 KEGG:ns NR:ns ## COG: alr1668 COG0438 # Protein_GI_number: 17229160 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 352 1 364 427 71 22.0 3e-12 MLVTLATRTFTPEPTAAALRLGALARALAAGGDRVRVLTSRLALSVASDACRLADGGVDV GEDSGLVEVRRAPVLRDRTGAVRGYVSYMSFDLPLIARLLAGPRPDVVVSEPPPTTGAAV RIACAARRVPYVYYCADIVSDAAALAGVPGFVVRTVAGLESFALRGARRVIAVSDGVARC ARDMGARDVAVVPNGVRVPEAVATGTPEGFPTCGGPVFVYAGTVAQWLAPEVFVDAFERA RARLGDARLVFVGQGSGWDALAERSRGVAGVEMIPAVSAEEADRWMARATATLASLRPGG YDYAYPTKILASLAQGTPVIYAGPGQAARDIAEGELGVACNLNADEVAEAMVGLASGTAA WVGAEGARAWVSMHRSVEASSRAAAAVVRSALA >gi|292821672|gb|ACYT02000012.1| GENE 106 126839 - 128143 1617 434 aa, chain - ## HITS:1 COG:PAB0776 KEGG:ns NR:ns ## COG: PAB0776 COG0677 # Protein_GI_number: 14521369 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Pyrococcus abyssi # 3 416 23 433 448 231 35.0 2e-60 MRIAVVGMGKIGLPLAVHYARGGHTVVGVDVNPGVVALINEGVEPFPGEAHLAEYLPPLA SSGALRATTEYAEAIPGADTVVMVVPLVVDNESRPDFRVMDGATRSMAAHLTPGTLVSYE TTLPVGTTRGRYKPLIEEVSGLIEGCDFDVVFSPERVLTGRVFADLARYPKLVGGLSEAG EAHGVSFYEAVLSFDERDDLPRPNGVWPMGGAEAAEMAKLAETTYRDVNIGLANQFARYA DAIGINVARVIEACNSQPYSHIHRPGIAVGGHCIPVYPRLYLAGDPDATIVSAARAANAD MPAYAVSRASALLGSLEGLRVAVLGATYRGGVKETAFSGVFGVVDALREAGAQVSVHDPL YADDELAAFGWDAYHLGEPVDVAIIQADHAAYRNLVPADLPGVRLLVDGRAITSPEAWAG TPRITVGGGSAPAC >gi|292821672|gb|ACYT02000012.1| GENE 107 128136 - 129332 945 398 aa, chain + ## HITS:1 COG:no KEGG:ELI_13320 NR:ns ## KEGG: ELI_13320 # Name: not_defined # Def: glycosyl transferase, group 1 family protein # Organism: E.litoralis # Pathway: not_defined # 29 383 3 370 379 155 32.0 3e-36 MRMRLPFPSPASLFPSSVVPLPTYNGGVDRALNLLLYPSNLASPGRLVKIARSLSPLFSQ THVVGINQGGLPTDEAVAPTVYLTRIRGTSLGAPLGGPRVVGAWGARVYRRFARQRVAAV SAQNLFLLPLAHALAQRTGAVFAYNAHELETETVGSAGLRQRLQRVIERRYIHRADVVSV VNETIAQWYREAYPGVEPVVVTNAPTGSDGVIDLRGQLGIPQDALLYLHSGYLAPGRNIP LILRAFEQVQNAHVVFVGAGALLPEVERAAATHPNIHRLPPVEPDQVLAMTRGADVALCL IESGCLSHRMSTPNKMMEAFAAGVPALCSPLSEARRYLGDQADAWVLEDPQRELVSALER ITRKDIAAFIAPTIPTWEEGATRLREAYERALAARARR >gi|292821672|gb|ACYT02000012.1| GENE 108 129354 - 130637 1340 427 aa, chain - ## HITS:1 COG:MA4450 KEGG:ns NR:ns ## COG: MA4450 COG2244 # Protein_GI_number: 20093236 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Methanosarcina acetivorans str.C2A # 11 375 10 379 494 101 24.0 3e-21 MMNAPARPARSGVLAQVLTLLGGTLLAQVIAFVAQIGIARLYTDTDLGYLGIFTSAATLG AAVAGARFDLSIVLPAPGDEASARSLAGLASRCVLVASALATLIAAAAWPWVSARYGSAL AGWMLAVGVSILFLAQGQVCSYWLTRHRRFQAIASSSVVRALGIAVLQLVCGFVAGGGLG AAIGATIAGQGIAVAYLSWRARDARERQDTDPTLREVASRYRKMALVGVPNVVVDALRTS TIPMLIATYSVAALGQFNLAWLALQAPVALIAGALSQVYLPRLSDTPPGEMTRVALRVGG IALACSIPVFALLAWVSPAIFPFVFGARWEAAGYFARSLAPWLALTVATSPLSNVFVATY HQRRMLAFACVYCAAPLAWLACSPYGVETTVAVLGALMAVLLVGMLLMAVVTARAYDRGD VTRPVTA >gi|292821672|gb|ACYT02000012.1| GENE 109 130728 - 131831 733 367 aa, chain + ## HITS:1 COG:PH0434 KEGG:ns NR:ns ## COG: PH0434 COG0438 # Protein_GI_number: 14590349 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus horikoshii # 82 306 80 279 336 87 33.0 6e-17 MRVALTKGTLLVPPTYFALSHALAMPELDWRAFTLAARITDPTVTVPIDEAAPRALGSPL LLRVTAQARGMGQMRRAITAWNPDVIHQHQATWSLPAVGAARETGVPLVVTLHGGDAYPR LGRGAGAAWNARNRTSAFEGASRLLAVSRYLADVALGAGADPERLSVHYQGVDTHWWTSA SNTAESREEPVVLFVGALSRLKGVDDLARASASLVGRRPHRLVLVGDGPLAPALRAHAPA HVTFTGRLDREGVRDWMRRTRVLVLPTKPTQGRQEAAGLVLLEAQACGVPVIAYRTGGTP EMIAPGASILSDERSPDALARSIDEALAWSEDEREDRGAACRAWVTHERSLRGSADQLRA IYADVTR >gi|292821672|gb|ACYT02000012.1| GENE 110 131841 - 132824 1057 327 aa, chain - ## HITS:1 COG:MK0248 KEGG:ns NR:ns ## COG: MK0248 COG0673 # Protein_GI_number: 20093688 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Methanopyrus kandleri AV19 # 1 327 1 313 317 154 34.0 2e-37 MSIRLGILGIGSMGRHHVRNARATAGVDLVALADPGGDRFGVAGDLPVLGGVEEIIEVGI DAAIIAAPTAHHEAAALALAEAGVHTLVEKPLATSVEAGRRIRDAFAAAGLVGAVGYVER CNPALIDMRRRIAEGQLGAIEQIATRRQSPFPARISDVGVVKDLATHDVDLAAWVAGAPY ESIYARTSARSGRVHEDMMVASGVLAGGILVNHLVNWLTPFKDRTTIVTGERGALVADTA MGDLTFYENGHAPLQWDAIAAFRGVSEGQVVRYALTKREPLALEHERFRDAILGAGSEHV TMDEALDNLRVVEAILSSAATGRSVDL >gi|292821672|gb|ACYT02000012.1| GENE 111 132826 - 133926 1275 366 aa, chain - ## HITS:1 COG:MTH1188 KEGG:ns NR:ns ## COG: MTH1188 COG0399 # Protein_GI_number: 15679199 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Methanothermobacter thermautotrophicus # 6 363 2 360 360 314 51.0 2e-85 MTQPFIPPARPLIGEEEIDSVAAVMRTGMIAQGPQVAAFEEEFCAALVPGVQAVAVNSGT SALHLGLLAARIGPGDEVIVPSFTFAATANSVAITGATPVFVDIDPLTFTLSPAAVEAAI TPRTRAIMPVHLYGHPAPMDALQAIADAHGLMVFEDAAQAHGASLHGRAVGSFGAFAAFS FYPTKNMTSGEGGMVTSSDPEIIRGVKLARNQGMETRYANEIVGLNNRMTDIHAAIGRVQ LTKVGEWTRARQDNAAFLDAHLRGVTVPHVAPGATHVYHQYTIRVAEDRDGFAAALREEH GVGSGVYYPIPNHELPSLARFAPGLGLAATREAADQVLSLPIYPSLTPGELERIVEAVNA LAEAGA >gi|292821672|gb|ACYT02000012.1| GENE 112 133923 - 134588 548 221 aa, chain - ## HITS:1 COG:PAB0773 KEGG:ns NR:ns ## COG: PAB0773 COG0110 # Protein_GI_number: 14521366 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pyrococcus abyssi # 2 188 9 185 205 140 40.0 2e-33 MIEPSADIAPSAIVAPSARVWHLAQVRENARIGEETIVGRGAYIGEGVRVGKRCKIQNYA LVYEPASLADGVFVGPAAVFTNDHAPRAINADGSLKSASDWDRVGVTVERGAAIGARAVC VAPVRIGEWASVGAGAVVTRDVAPYALVVGVPARRVGWVGEAGLPLEASDDAGNEAGERT WVCPASGRRYAERDGALSPEEVQASSPNDAETPHQTSEDQQ >gi|292821672|gb|ACYT02000012.1| GENE 113 134685 - 135383 382 232 aa, chain + ## HITS:1 COG:MT3733 KEGG:ns NR:ns ## COG: MT3733 COG0463 # Protein_GI_number: 15843243 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mycobacterium tuberculosis CDC1551 # 11 232 8 234 237 180 49.0 2e-45 MCDTNQMQIGSDTWVVIPAFNEASVIGGVVAGVRTFFPRVLVVDDASSDNTAAIARAAGA YTARHPLNLGQGAALQTGFDAALARGARYVVTFDADGQHDPAEAAAMVERAHREDLAFVL GSRFLSGSPSSAGRVKRAMLRLGALVARLRTGLELTDTHNGLRVIRVDALAHVHLTHARM AHASQIVSQLAACGLPGAEHPVTISYTDYSQAKGQPLLNSVNIVVDLALGGR >gi|292821672|gb|ACYT02000012.1| GENE 114 135380 - 135850 384 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189333|ref|ZP_06608056.1| ## NR: gi|293189333|ref|ZP_06608056.1| putative membrane protein [Actinomyces odontolyticus F0309] # 23 156 23 156 156 180 100.0 3e-44 MSAYLAIRILLLLALALTAWWLVRPVSSASSLAMRRIGIGAVVAAAIVAILVPSLANTAA RAIGVERGVNLIVYGLVIALIAQMVTGYRREARAEERMAALARSLALAHVLPPDDPGDAS TETSSSHADTSGVERAANGPSSPTNTPDNDMVTNDE >gi|292821672|gb|ACYT02000012.1| GENE 115 135840 - 137150 1824 436 aa, chain + ## HITS:1 COG:MT0844 KEGG:ns NR:ns ## COG: MT0844 COG1316 # Protein_GI_number: 15840235 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 54 430 203 576 684 112 28.0 1e-24 MMSNVNLRPIQHSAVNFGRFGFLRGALAVLLAGVLFVVSSAGFVYAKLSTQFANRVVNID AYASDEQNKATPDSFEGRAVNILVVGTDSRNGASGELGAGDADDVPGLRNDSTMVIHVSA DRSRVQIVSIPRDTLVDIPACKHRDGTTSEPTTDDMFNNAMVYGADGGDEPEDIGPGIAC VRSTVEKLSGMSIDAFMVVDFAGFVNMIDSLGGVWFNIPEHIDDDSAQLYIDAGCWKLSG THALAYMRSRKGQGDGSDISRIGRQQQLISAMLRELQDKNYVTDPSSLINFLQAAISSVN VSPNLGNASSDASLLINVLQNIDRSNIQFVTMPVEEPSWDPNRRIPSEPMARNVWNALKN DQALPVGTTYTDGNGAQLVVPDPTATTAPSTQAPATDPSSEETTTDNTAQSASVANNAAN EEAAKQTAATCPPKNQ >gi|292821672|gb|ACYT02000012.1| GENE 116 137147 - 138517 1316 456 aa, chain + ## HITS:1 COG:Cgl2840 KEGG:ns NR:ns ## COG: Cgl2840 COG1316 # Protein_GI_number: 19554090 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 154 441 2 288 288 169 38.0 8e-42 MSNPPSFTPDPKRRRPGSDDAHVVGEEVHGGAPTPPPEALAPQMWRISDDEAAAARPLMP RTLDQPQRGSQSIFPRRTPAQQPPSFQPASAANPPSYAPGSGRSSGSGTYAPSGIGPRQV TINRSQSAPAPAAPAAPATKPRRRKRRHPILKTLCLFLVLVLAWGGFLMWDANTNMGRVS ALSGAAGTPGTTYLLAGSDSRADGAVQDGFNESERADSIMLVNVAPNGQKVALSIPRDTY AEIPGVGWDKINASYAYGGPRLLVETVEKLTGLTIDHFVQIGMGAVPDMVDAVGGVELCY DSDADDQYSGLKWSAGCHTVDGTTALQFSRMRYQDPEGDIGRTKRQRQVISKVISSAASP STLVNPAKTLRVERAGSKSFTIDEDSSVVTVASLVWALRGASSNQMMGVPPIASLNFTTN AGASAVLLRDTTADDFFAKLRAGSLTTSDLNQVDNV >gi|292821672|gb|ACYT02000012.1| GENE 117 138619 - 139614 1421 331 aa, chain - ## HITS:1 COG:L0024 KEGG:ns NR:ns ## COG: L0024 COG1087 # Protein_GI_number: 15673961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Lactococcus lactis # 1 324 1 324 326 254 42.0 1e-67 MSILVCGGAGYIGAHVVRLLRQRGDRVVVVDDLSTSNAARIGDTPLVRLDVATDEARSVL SNLMVDEDVTAVIHFSARKQVGESVARPTWYYQQNIGGMANVLAAMEDAGVDQMIFSSSA AVYGIPTAEVVTEDMAGHPINPYGETKLIGEWMMADCERAWDLKWIGLRYFNVAGAGWPD LADPAIMNLIPMVLDRIERGESAKIFGTDYDTPDGTCVRDYIHVLDLAEAHIAALDVLAE GRQPDHHTYNVGTGLGTSVREIIDGLRRVIGWDFPVEELDRRAGDPPKLIGDPLSIGVDL GWKANNGLDEILTSAWEGWQAGPRPITVPGS >gi|292821672|gb|ACYT02000012.1| GENE 118 139678 - 140232 783 184 aa, chain - ## HITS:1 COG:Cgl0694 KEGG:ns NR:ns ## COG: Cgl0694 COG0041 # Protein_GI_number: 19551944 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Corynebacterium glutamicum # 16 180 3 163 165 171 63.0 6e-43 MTTELDIQLTATGDNPLVGVVMGSDSDWPTMEAAVGALAEFGIACEVGVVSAHRMPEDMV AYGRSASARGLRVIIAGAGGAAHLPGMLAALTELPVIGVPVPLKHLDGVDSLHSIVQMPA GVPVATVSIAGARNAGLLAARILGAGEGERAGSLRASMRDFQKDLRDVASAKGAALAQRV SQAR >gi|292821672|gb|ACYT02000012.1| GENE 119 140300 - 141454 1262 384 aa, chain - ## HITS:1 COG:Cgl0691 KEGG:ns NR:ns ## COG: Cgl0691 COG0026 # Protein_GI_number: 19551941 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Corynebacterium glutamicum # 5 372 2 372 387 300 48.0 3e-81 MLTPPTVAVIGGGQLARMMQESAVALGINLRALVEASDGSTGQVTVDKAVGEPADLDAVR ALIDGADVLTFEHEHIPAPTMEEAARLVSVQPPASALLYAQDKLAMRKRLTEMGIPCPAW ACVEDEAQLAEFGATIGWPLIVKTPRGGYDGHGVAVAHSPADVSSWWGNGLLLAEALVPF TGEVAALLARTPSGEIASWPVASTVQIDGVCAEVTAPAVGIRPETAAEAQRIGERIAAEL GVTGVLAVEMFVVGEGADERVLVNELAMRPHNTGHWTIDGAVTSQFEQHLRAVLDLPLGS TQLRALGTHVVMVNLLGSSHAQPARALAAAFAAGGTGAKVHLYGKEVRPGRKLGHVTVVD ADPALALERARAAVNALKGETPTS >gi|292821672|gb|ACYT02000012.1| GENE 120 141488 - 142816 1197 442 aa, chain - ## HITS:1 COG:lin1415 KEGG:ns NR:ns ## COG: lin1415 COG0642 # Protein_GI_number: 16800483 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 121 400 169 459 483 94 26.0 4e-19 MRARAVRMIVSIVAVVCVLMGMPGAFFASASIWSSEQRSLDVQAQLILQNIERRRAVGEG NDPATLASLVADQANSRGDELGYRIKVPEANLVTNSKVFPGRTMTALASSPSGVSVQLTA SASNALNRIARTCAMFGGGMVASLVIGWVLARSLSRELSAPLIYLAAQAEQIGSGGVRAR VEKSGIEEIDLVSEELARTGERMAGRLAAERQAAADASHQLRTPLTALSMRLEEIELIST EDEVRAEARTCLEQVERMTNVVTELLDVSKRQTSQTEAIHILEVFNTAREEWEDQFEAAG RPLIFLDEAERPILADAGKLGQVLATLIENSLRYGGGTTRVWAHAGTSKRGVVIEVSDEG EGIDESLAPDIFQKGVSGHGSTGIGLALAHDLAQAMGGRLELKTNKPPVFTVSVAAIPAS LDPDRVMPEGPLMSMGRRSRRF >gi|292821672|gb|ACYT02000012.1| GENE 121 142841 - 143518 826 225 aa, chain - ## HITS:1 COG:all4503 KEGG:ns NR:ns ## COG: all4503 COG0745 # Protein_GI_number: 17231995 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 2 221 22 252 253 184 45.0 8e-47 MTTVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVRGVDLVVLDLGLPDMDGLD VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAA EPAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWG SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFENAR >gi|292821672|gb|ACYT02000012.1| GENE 122 143612 - 144646 829 344 aa, chain - ## HITS:1 COG:MT2268 KEGG:ns NR:ns ## COG: MT2268 COG2114 # Protein_GI_number: 15841703 # Func_class: T Signal transduction mechanisms # Function: Adenylate cyclase, family 3 (some proteins contain HAMP domain) # Organism: Mycobacterium tuberculosis CDC1551 # 24 300 66 336 388 63 27.0 5e-10 MDEHAASSPATPDELTATSYVPQLLGGHLMYSARDLAEMTNTPIERVFRFWIALGFQAPT ADDKVFSQRDLEVFSRWHDLVESGGIDTATSRSLLRANAHLADRLALWQFEALVEDSMRR LMLDDTTARMYVLDHMREYIDVFQEMFTYAWRRQLEATLSRFDREVSQRGHEERHNRFPL NRCLGFVDMVSYTSSSTILGDALVGLIERFEEESRNAVIEEGGRVVKMIGDAVLYIADDL PTGLRVATALIERLNADDEMLPVRASFVRGDVFSRSGDVFGPTVNLASRLVDIAPVGKIL TDPTTAAAIAAGEVGDGYELEEFPTADLRGFGPVSPYLLSSVVK >gi|292821672|gb|ACYT02000012.1| GENE 123 144873 - 145580 655 235 aa, chain + ## HITS:1 COG:MT3381 KEGG:ns NR:ns ## COG: MT3381 COG0424 # Protein_GI_number: 15842873 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Mycobacterium tuberculosis CDC1551 # 2 230 3 210 222 140 44.0 3e-33 MRLVLASASPARRATLIAAGITPIIQVSTVDEDAVLAALPGGRAFSGCTTTPADEVAALA AAKCADVCKALSTPGTNAELPEDETVLVVGCDSMLEIDGQMLGKPHTPDVARERIRAMRR TSATLWTGHSAAILAPASSDDDQRHERTITATVTRSASTQVHFGDISDAEIDAYVATGEP LHVAGSFTVDGLGGPFIEGVTGDYHSVVGISLPLLRSMATELGVFWPDLWDAPRP >gi|292821672|gb|ACYT02000012.1| GENE 124 145625 - 146581 1243 318 aa, chain + ## HITS:1 COG:ML1058 KEGG:ns NR:ns ## COG: ML1058 COG2171 # Protein_GI_number: 15827515 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Mycobacterium leprae # 8 317 9 317 317 325 61.0 8e-89 MDNSTAWGIGLATITLDGTTLDTWYPAPHLGDPGTDEELATSLSVLERVDDARRARTVVV TTTIDLQEAPASTEDAYLRLHLLSHRLVKPNTINLDGIFAVLPNVVWTDAGPCAVADFEA TRLRLRARDGHPVTVQGVDKFPPMVNYVLPSGVRIADGTRVRLGAYLSEGTTVMHAGFVN FNAGTLGRSMVEGRVSQGVVIGDGSDVGGGASTMGTLSGGGKQRVRLGERCLLGANSGLG IALGDDCVVEAGLYVTAGAKVTLIDSSGEAEPRTVAARELSGASNILFRRNSQTGRIEAI ARAGIVGIELNDALHASN >gi|292821672|gb|ACYT02000012.1| GENE 125 146553 - 147743 1223 396 aa, chain - ## HITS:1 COG:ML1488 KEGG:ns NR:ns ## COG: ML1488 COG0436 # Protein_GI_number: 15827783 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mycobacterium leprae # 11 374 11 366 367 322 53.0 1e-87 MTTILPRPLDLPEFPWDQLAPAKARATEHPGGICDLSVGTPVDDTPAFIREALADASNAH GYPTVIGTAEVRDAILAWGQRRGMVDVGHGGVIPTIGSKEAVAWIPALLGVRPGDMVLVP EVAYPTYDIGARLAGATPVAVDPTNPDAWPEATLVYLNSPGNPDGHVMSKDKLRAVVAWA RSHGAVVVSDECYAALPWSEPYVSEGVPSLLDTDVCDGDASGLLVLYSLSKQSNLAGYRG ALIYGDPALVAPIVSVRKHSGLMVPAPVQHAMAVALRDTEHVERQRSVYAARRALLLEAL TDAGLDVDPDTAAGLYLWVSDRANPTDSWALVNRLAELGILVAPGDFYGTAAHGRVRVAL TATDERIQAAASRIREAWAAPASLVRRLSSTRAARR >gi|292821672|gb|ACYT02000012.1| GENE 126 147763 - 148104 501 113 aa, chain - ## HITS:1 COG:Cgl2895 KEGG:ns NR:ns ## COG: Cgl2895 COG1146 # Protein_GI_number: 19554145 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Corynebacterium glutamicum # 1 106 1 106 107 159 76.0 2e-39 MTYVIAQPCVDVKDRACVDECPVDCIYEGARSLYIHPEECVDCGACEPVCPTEAIFYEDD LPSEWSDYLRANVDFFNDLGSPGGAQKTGVQDFDDPMIAALPPQNEEWKAENL >gi|292821672|gb|ACYT02000012.1| GENE 127 148157 - 148483 205 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189346|ref|ZP_06608069.1| ## NR: gi|293189346|ref|ZP_06608069.1| 2-hydroxymuconic semialdehyde dehydrogenase [Actinomyces odontolyticus F0309] # 1 108 1 108 108 172 100.0 6e-42 MSSPESPRVPDSAASGENTPIQHTETEGARKEFSTRAPGAIPQLPWMSFAVGERIVIRYR LADGLHDALGEALEVAPTHVTVATRRGPVRVDARTMVTGKRVPPPPTI >gi|292821672|gb|ACYT02000012.1| GENE 128 148506 - 150425 2775 639 aa, chain - ## HITS:1 COG:Cgl1074 KEGG:ns NR:ns ## COG: Cgl1074 COG1217 # Protein_GI_number: 19552324 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Corynebacterium glutamicum # 3 639 2 637 637 733 62.0 0 MSTRPDLRNVAIVAHVDHGKTTLVDAMLWQSGAFSERDTVEKTGERVMDSGDLEREKGIT ILAKNTAVHYTGPAAQALGLKDGVIINVIDTPGHADFGGEVERGLSMVDGVVLMVDASEG PLPQTRFVLRKALQAHLPVIVVVNKVDRPDSRIEEVVSETTDLLLSLGEDLMNEGIDIDV DSLMDVPVVYASAKAGKCSLENPGDGQLPTENLEPLFETILNRIPGPTYDEDMPLQAHVT NLDASPFLGRLALLRIHNGTLKKGADVGLARHDGTIQRVHISELLATEGLERVSTDSAAP GDIVAVAGIEDIMIGESLVDLEDPRPLPLITVDDPAISMTIGINTSPMAGRVKGAKVTAR QVKDRLDRELIGNVSLKVLPTERPDAWEVQGRGELALAILVEQMRREGFELTVGKPQVVT KEIDGVLSEPMERMTIDIPEEYLGAVTQLMAARKGRMETMANHGSGWIRLEFVVPARGLI GFRTRFLTETRGTGIASSISEGYAPWQGSIEQRLTGSLVADRAGQATPYAMTNLQERGSF IVEPSSEVYEGQVVGENPRGEDMDVNICREKKQTNTRSATADVYESLTPSRKLTLEESLE FAANDECVEVTPEAVRVRKVVLDAQERFKIAARERRANR >gi|292821672|gb|ACYT02000012.1| GENE 129 150441 - 150671 142 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189348|ref|ZP_06608071.1| ## NR: gi|293189348|ref|ZP_06608071.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 76 1 76 76 144 100.0 2e-33 MWIQIYACEGGMEAADTTGSNRFHAHTTLRISAERGATRSPCCEFHHVVDTWRRCEAPSA RLFARSQAMTLTGLYD >gi|292821672|gb|ACYT02000012.1| GENE 130 150664 - 151518 876 284 aa, chain + ## HITS:1 COG:VC2001 KEGG:ns NR:ns ## COG: VC2001 COG0676 # Protein_GI_number: 15642003 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzymes related to aldose 1-epimerase # Organism: Vibrio cholerae # 13 276 33 290 296 185 39.0 8e-47 MTDITTLSADVSKASTLVTLFGAHLLSWRPAGHPDVLWLSSRAVLDGTKAIRGGIPLCLP WFGSPTDSPTRPGQGAGAHGFARTSPWTLLGSTQPANDAPASFSFELHHTGETSALYPHS FCARLDITAGAELNTTLTLTNEDDHPFAIEAALHTYLHVGDVKDVTVEGLDRERYYDKVR ERYATQTGDVTFIGPTDRVYTSTQLVQVVDPKLGRRIIVDKSGSGSTIVWNPWSQGAATM SDIGEGEWQNFVCVETAAVRERALTLWPGHPHIMTQTLAVETLD >gi|292821672|gb|ACYT02000012.1| GENE 131 151566 - 152144 716 192 aa, chain + ## HITS:1 COG:CC1900 KEGG:ns NR:ns ## COG: CC1900 COG0204 # Protein_GI_number: 16126143 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Caulobacter vibrioides # 17 178 21 182 196 107 39.0 1e-23 MALTSAIASAYLSVSRWKLSTQPLPDKVIVIGAPHTSNWDGVFMAISMWKSGRTFSFLVK DSVVKAPVLGWFVKKIGAVAVERSASHGLVEQVAQRIREADTFTLCITPKGTRSPRVFWK SGFYRIAMEAGVPIQLGFIDRNTRTFGWGPTYQLTGDVHADMEAIRAFYADKVGIHPEKT SVPRLRAEDEAE >gi|292821672|gb|ACYT02000012.1| GENE 132 152141 - 153031 313 296 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189351|ref|ZP_06608074.1| ## NR: gi|293189351|ref|ZP_06608074.1| hypothetical protein HMPREF0970_00387 [Actinomyces odontolyticus F0309] # 1 296 1 296 296 400 100.0 1e-110 MRLTRALLGTAGALALTAGGAAAYADEPTQIRLVEVYEMTPGVSATHQVTLSTDHALIGE QCQSMGTAAQATSSLLVDVGGVLGCRFTWNLEDANAEVVSVDDGGVFHFESTSARLLEGF SSPEASASIESVTLIAHDSVVVEASDGGEISVPSSSTKNDTSTVVWHGVTDNVSASGSVA PGASAPAPSPSPSSSTSPVSSSEQRGGSSVGRSLMPVLAATGSVLALVIIGALVRGRAAS QRRAADAQFDRDASLKNARRAQSGARQTSALPYARSAAISKGSEAPPNEERFAPPE >gi|292821672|gb|ACYT02000012.1| GENE 133 153092 - 154585 1861 497 aa, chain - ## HITS:1 COG:MA3382 KEGG:ns NR:ns ## COG: MA3382 COG0174 # Protein_GI_number: 20092196 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Methanosarcina acetivorans str.C2A # 2 497 1 506 506 474 46.0 1e-133 MLSTDTVSLSPNPLVAALGKPAKEFTKADIIGYIEDNGIRMLNLRYIGGDGRLKTLNFAI QSKAHLDRVLTLGERVDGSSLFAFVEATSSDLYVVPRLATSFLNPFSHIPTLDILCGFYD VDGKPLASAPQEILRKAQRALKEETGCELQALGELEYYLFSDEEDLFPVEPQRGYHESGP FSKWESVRTETLLHLVSMGCSVKYAHSEVGNFVSDGRQMVQQEIEFLPVDALDAADQMVL AKWVLREVAHSYGIHVSFSPKIAVGQAGSGMHFHTRLVKDGVNQFSTGSGLTETALKVIG GYLSHAASLTAFGNTVPTSFLRLVPHQEAPTAICWGDRNRSVLVRVPLGWQNIDDSMFRD ANPAEPPIDELPNDSQTVELRSPDGSAAVHLLLAGIAVAARIGLTEPGMADYARERKVDG DASQTPDLDQLPGSCFEAAGRLLTQREDYEAKGVFPAGLIDSWASHLVALGDMHLRDDLA DSRISVEELVERYFHIG >gi|292821672|gb|ACYT02000012.1| GENE 134 154798 - 155268 -92 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189353|ref|ZP_06608076.1| ## NR: gi|293189353|ref|ZP_06608076.1| penicillin-binding protein [Actinomyces odontolyticus F0309] # 99 156 1 58 58 85 100.0 1e-15 MTEGENLGVRQDPRRSRGFGGLAASVPGTVGKGSGSRWRSRIGPREGVPGGRAPALKVEG AQCPVDKVPLNRCAGGEACALQREVGFPWPPVGRCSSDMDGRSGEESAGVMERRFDEAER GGAGPERFVDPMGRLIDAGGVSQVGIGADIGSSVGR >gi|292821672|gb|ACYT02000012.1| GENE 135 155678 - 156109 362 143 aa, chain - ## HITS:1 COG:NMA1517 KEGG:ns NR:ns ## COG: NMA1517 COG0789 # Protein_GI_number: 15794411 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Neisseria meningitidis Z2491 # 9 127 2 119 135 71 30.0 4e-13 MVGTRSGRTYSIKEVAALVGLPASTLRYYEDVSVIPAIARDPSSGHRIYQEDDLELLTWV SCLSASGMSIADMREYVRLGLGGERDVSEFITLLEQQDERLQEEAQILELRREFLRTKIS YWRAVRGGDVQEAERLDGAARAC >gi|292821672|gb|ACYT02000012.1| GENE 136 156257 - 156883 312 208 aa, chain - ## HITS:1 COG:no KEGG:smi_0862 NR:ns ## KEGG: smi_0862 # Name: not_defined # Def: acetyltransferase # Organism: S.mitis_B6 # Pathway: not_defined # 4 201 7 204 210 114 28.0 3e-24 MKCRPATRGDIPEMTRIITEGFLDYPLHIMLKPYLYQPDCYPQCLAAINRMLASSYQWAR HALVVEHEGQVVATALMHDRKVGVVRNFLSGGYELFRYASPHLVADFLDVTDRSDQIAID NGDFDWYLEVLSVDASMRGRGVGRWLVSEVLPDFVAKRGGRAYGFVTSTEKNARFYLNGG CELLDRVDVHMREETCPIWAFQRRAELL >gi|292821672|gb|ACYT02000012.1| GENE 137 157126 - 159648 2078 840 aa, chain + ## HITS:1 COG:no KEGG:Cthe_3078 NR:ns ## KEGG: Cthe_3078 # Name: not_defined # Def: cellulosome anchoring protein, cohesin region # Organism: C.thermocellum # Pathway: not_defined # 282 755 1406 1882 2313 89 25.0 5e-16 MRLFRALCAMLGALLIVSTLPSGAYAADGPTLSEAFVLTKDGQLVDTLTIIDPSRTMSES ACQPYAGKSSDQHVEFVTRDDATVCHMQLMYTNAENESEFSLEDSGEFVMTAHAERTLTE SRKLFHPDLTLKSLSLSVEGEVQSATAGASTSATTYEGRTFSVTSWTDTVPQMITVKGSL TPGGDPSAAATTNALKDPWGVTPMPTSASASSSVAPTADAAAAPEESSDPPIALLIGLIV GLVLLVIGIVVVVYVVRAKRGKKATSGTQAATPASHIRGPSPARGNEGVEHYAPPTPIAP AATSAPAPAPTKRPSASLNPPQPTPRDTGFTWEHKSRPMPTAAPVAATPEAPKRRRSRKD HRPAVFPERPAQPMAGQPMPGAGMSDGPLQVPMTGVSQRSAAPAAPPASPQAPTVAPTPA TSPTPTQASQPVVTVPQAAASAPQRETHTESASDSSLHRRSRQASEAQQAADAQPVFPSR RSQRQVVRDAHVPQPIPAPGEAPAAQQVPIPVPMPPVPPVPPPPASAVDAPKTMLIPKVR QAAIPVPKPVVEPEPIVEPEPVVEPEPVAVVEPEPIVEPEPVAVVEPEPIVEPEPVAVVE PEPIVEPEPIAVVEPEPVAVVEPEPVIKPEPVVAAEPDPIVEPEPIIEPEPIVAPDPVVE PEPVAEPAPASSMLFIDDAEMPTAQIRRVRRERPADWGTPESAAPVQQPEPAPQVSTPPM TPAPFEQSAPAMPSVVEQPQAPASPQMPAAFQAPAAATPFQEDWNAEISQKKEAPREQEG DKKRRGLWGWGKRRKKRNEAATAPEPEIDEPIESSHAPMISVDAQDEDDWNDWQNWNSRS >gi|292821672|gb|ACYT02000012.1| GENE 138 159667 - 160755 844 362 aa, chain - ## HITS:1 COG:no KEGG:SCAB_16151 NR:ns ## KEGG: SCAB_16151 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 78 357 95 370 377 93 31.0 1e-17 MPDCLKEADSEADDIRQRMTGDDRAQWDAIQEWKAAQISPRSPRVITQRIRSYVLTPLKK MADLARKVPGGAAIADKTSSAVLGLVEKTTSAAESSVPRKRIVKAYRRAGNDIECLEDIR NLNLAEIQLVRPHLKVGYAVATATEGAVSSIFATGGSVAALLGLGIASAPGIGVIVGAIG LDIATFLASSARLVSHTAAYYGYDTKDPAEKLFSAMVLSQAIAPRSTVGDHAVEKETSMR MFNKVVRKLTKRGSMESIGNNALTASVNSLFAALGARLVGMKMAQILPIIGIIVGMALNA SLIRTIGVTADNLYRERLLLERYGQDEADVEAEATSDGADNPDDLDEELAHYVEFAKVES RL >gi|292821672|gb|ACYT02000012.1| GENE 139 160821 - 161879 1033 352 aa, chain - ## HITS:1 COG:no KEGG:SCAB_16151 NR:ns ## KEGG: SCAB_16151 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 82 313 109 335 377 83 32.0 1e-14 MSDDLRARMSESDAAHWDEIQRWKDVQMRPIRPRVISQRVRSAALAPLGKAVSIARKVPG GEALTRTVSSAALGLVELAASASEASVRRKRILKAYRSAGFDVRTLQDIRSLTLDDVLTV KPRLSLAYSTTAAAEGAVSGVFASGGSVAAVLGMGVASAPGVGVTASAIAVDITSFLAAA TRLVAHTAAYYGYDSEDPTERLFSTMVLSQAIDPTGSGRDFVVEKQTTMLAFNKVMRDLA RRGSLDGLGSNVVVSAMNSLFSAMGVRLASRKLAQIVPVAGVVVSAGLNAALMRTIGETA DHLYRERFLAERYGRVEPGDGASTDLVRPADTQELSADIARYVEIAEAESRP >gi|292821672|gb|ACYT02000012.1| GENE 140 162019 - 162837 1035 272 aa, chain + ## HITS:1 COG:FN0819 KEGG:ns NR:ns ## COG: FN0819 COG0457 # Protein_GI_number: 19704154 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Fusobacterium nucleatum # 4 116 2 105 665 63 35.0 6e-10 MESRESLINQIALLHEEKEHQKIIALIEGQPPAAMDYELTSLLARAYINYAQPYMDSFQE HIKHAVELLRSVEAEGMADPQWYYRIGTALYWQDEEESAITYLEQCLAMDPTHEDAPQVI EECKRALERRTVIRPLDMHALIDFFERNDYRYDVEDNRLRTGFTNGYYVFSVIDDGADLS MWGGIREDVSMELRPRLIQACNDWNAATKWPKVYVATLDDGTQRVCAEQFVSSRYGMTDA QVSINIDRFISASESFFKEQIERIPALGGASE >gi|292821672|gb|ACYT02000012.1| GENE 141 162928 - 164421 1839 497 aa, chain - ## HITS:1 COG:L77437 KEGG:ns NR:ns ## COG: L77437 COG0366 # Protein_GI_number: 15673233 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Lactococcus lactis # 22 494 4 478 491 427 44.0 1e-119 MRVNETIEPALASSLTEAGPLILQAFAWDMAPDASHWRYLAQHAQEIADLGVTIIWLPPA YKGQAAINDVGYGVYDLYDLGEFDQKGTVPTKYGTKDEYLGAIEALHEAGIAVCADIVLN HRMGADATETVRATPINPQNRHEAIGEPETIEAWTRFTFPGRAGAYSDFTWDWTCFHGID WDEATKRNGLWLFEGKQWNESVDTEFGNFDYLMGCDVHVTDPRVSEELDRWGKWYVETTG VDGLRLDAVKHVGSDFYARWLEDLRTSTGRLLPAVGEYWSGDVRELEDYLERVPNVMLFD VPLHYHLHQASVSDGNVDLARLWENTLTASHPDKSVTFVENHDTQPGQSLASTVAPWFKA AAYALILFNEAGVPCVFWGDLLGSPESDDLPAVRELPVLMSIRARAAVGPQHNAFDHPDV VGFAREGKDEIPGSGCAVILSDRMAAEKTLYVGTRHAGQAWECIIGDHPSVLVADDGTLT GVVSDGGLSVYVPRSNA >gi|292821672|gb|ACYT02000012.1| GENE 142 164550 - 165551 1000 333 aa, chain - ## HITS:1 COG:no KEGG:SCO6631 NR:ns ## KEGG: SCO6631 # Name: SC4G2.05 # Def: hypothetical protein # Organism: S.coelicolor # Pathway: not_defined # 25 270 10 256 291 176 41.0 1e-42 MPDMMNARARNSQTAGVATGQQSEPEQRALEFLAKVVRVPGVRVNREEFLHQELRKLRMG DDAIARAIDSSPLLAGVSLTEIDRLAEEAISYETNKSAAISFVAGIPGGFAMLGTIPADL MQYYAHALRIMQKLAYLYGWGDLLPDGRDADDDTLGVLAVFFGVMLGVGGAAQSLTAFAR VAAKTAYRNHATKRALMSITWYPVVKHSLRLIGINITKSTAAKGFSKIVPVIGGFVSSGL TFMALQSQSALLKEHLREIPPPGVDVDEWDRHRLGATRQGQTPETATTIKKGLRGKAKVV MVGAKSAASGIADGASSAASTLSSVKGRLGRRK >gi|292821672|gb|ACYT02000012.1| GENE 143 165695 - 166567 806 290 aa, chain + ## HITS:1 COG:alr2616 KEGG:ns NR:ns ## COG: alr2616 COG2510 # Protein_GI_number: 17230108 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Nostoc sp. PCC 7120 # 155 288 9 142 143 96 43.0 5e-20 MWILAACLSALFAGLTAVLAKAGVASTNSTVATALRTVVVAAGAWGMAALTGTASGIASI DGTSTLFLMLSGLATGASWLCYFAALSRGDVSRVAPIDKLSTVLAIILALVLLGEPVSLW GAGGVVAITAGTLLMVEPSDLSGLPRALRGGGSWLTFALASALFAALTSILGKVGISGVD PTLGTAMRTMVVLAMAWVIVGAQGHLGEVRSVPGRELAFIVASGAATCASWLAYYHALKD GPASVVVPIDKLSILVTVAVSAVAFHERFTPRYLLGLALMCAGTAAMVVA >gi|292821672|gb|ACYT02000012.1| GENE 144 166588 - 167511 676 307 aa, chain - ## HITS:1 COG:no KEGG:Xcel_1535 NR:ns ## KEGG: Xcel_1535 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 169 287 183 287 303 70 38.0 8e-11 MTKKIFGVWPAIVLAILAVVLLPQSVQAEESDPPPIFNTDAHDGDIDALLRQGKRQYDSG VQPSTESPNDESIRLSNSADASAEAHVYAEDDKCDGHTMHTVTLPDGTESAPFVCAHITR KGDGSNAGQLPTTREILYYAATTIHADGAGLHKRPEGVSYTNKYIPTLVAATHPTQTRTV TLLGHAITITLTATSYTWSWGDGTPDLTTTSPGMPWQEGMDPNTDPALIRHYYKAPSGWK SFLDGPYPSATRTITLTTTWAGTATNPFTGDTQTINGLVTTTETTGPFPLGQLIVNNTDT SEEKRGH >gi|292821672|gb|ACYT02000012.1| GENE 145 167504 - 168301 543 265 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189367|ref|ZP_06608090.1| ## NR: gi|293189367|ref|ZP_06608090.1| hypothetical protein HMPREF0970_00404 [Actinomyces odontolyticus F0309] # 1 265 1 265 265 473 100.0 1e-132 MKVPPLSERPVTEEEEQAFLAPPSRRKKRSIVDTRAALRPWVIGIGLTVLVAVACVVAYR LAAGIGSWSENPSAAATPTVHPAPAPTVSSEPAMSGGYEIGPDGVLVRPAEFAADTYTKP ELPKAAKENSERGAEAAAEHYLALMVYAWNTGDTTLFEDMSAGDSQFAREVMQRINALYG EGWLYNNSSSVEHVLKLEPAESSDGEGDSNAVAVVFAISSADGTICRKKSIFVREQPYHS IFALVMTWEDGRWVVTRAGMEKAND >gi|292821672|gb|ACYT02000012.1| GENE 146 168508 - 169551 1157 347 aa, chain - ## HITS:1 COG:mcrC KEGG:ns NR:ns ## COG: mcrC COG4268 # Protein_GI_number: 16132166 # Func_class: V Defense mechanisms # Function: McrBC 5-methylcytosine restriction system component # Organism: Escherichia coli K12 # 1 344 5 347 348 150 28.0 4e-36 MIRIRNVFHMLAYAFSALREQGYRAVATEDFDNAAELCAAILERGVSLQLKRGLGQEYAS RTEARSSLRGKIEVTESVKSQAILRRQLVCSYDEFSVDTTMNRVIKATVALLVRSDISRA RKKSLKKLMVFFADVREIDLHTVDWNMRYDRNNCTYRMLMAVCWLVVKGLLQTQSDGTTR MMDFFDEQRMSRLYEKFILEYYRREHPRLNASASFIEWALDDGVSEGLPAMRSDITLSAR GHVLIIDAKYYASTMQSNFDKRTVHSGNLYQIFAYVKNKQIAFEQAGESVEVSGMLLYAA TDEDIQPDATYCMSGNRISVTTLDLDRPFLEIRAQLDGIVEEYFLGE >gi|292821672|gb|ACYT02000012.1| GENE 147 169548 - 171719 1969 723 aa, chain - ## HITS:1 COG:mcrB KEGG:ns NR:ns ## COG: mcrB COG1401 # Protein_GI_number: 16132167 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Escherichia coli K12 # 432 718 167 461 465 283 49.0 7e-76 MTTDSQYSWPRFFMELADKLLAFKDDRQALIATLQYVYAELGMDLPTLDSGGIPTDIDPF TVYGLFNRGLTDNKRRAVALGIGGALGVQAPLHDDFVGVPVLLNINATFYDQVRRDDGDI ERLWDLFAVALAYADQPTEQAEAVFRHAYDAVLQQRHASWNVTMGLFWIRPYAYVNLSSR DRWFLALPDRMPSSVRSVLASIKKVPGSAEYLRIRDSILLVLKSGTYEYASFPELSAYAW RVSEQVNRENKDSDKEKEEVTQEAALGDADVQIVRYWLYAPGRGACMWDEFYSRGIMGLA WGEIGDLTAYAHKEDLKAQMLQTYPENGTQKNDIHALWQFANEMKPGDVVFVKKGRSEIL GRGIVAGDYVFDPEGGHYPNCREVRWTSAGNWPIDERLAMKTLTEITDYPELLSRIETFF EDSDDDVESEEPLVIFPEYSARQFLNEVYMGEERYDAIVGLLRTKKNIIMQGAPGVGKTY AAKRLAYSMMGVKDASRVMLIQFHQSYSYEDFIEGYRPSGAGFELVKGAFYSFCKTAADD EENAYFFIIDEINRGNLSKIFGELFMLIESDKRGPKNKLQLLYSRELFYVPRNLHIIGMM NTADRSLAMLDYALRRRFAFVELCPAFDSDGFRDYCSGLGNLRFEALVREVESLNRAIAE DESLGEGFCIGHSYFCNMKPETCTDAALASIVDYELIPMLKEYWFDEPGKVREWTDRLRR SLR >gi|292821672|gb|ACYT02000012.1| GENE 148 171836 - 172144 263 102 aa, chain - ## HITS:1 COG:Cgl1005 KEGG:ns NR:ns ## COG: Cgl1005 COG3093 # Protein_GI_number: 19552255 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Corynebacterium glutamicum # 8 96 8 96 99 127 66.0 6e-30 MTTTKIAPIHPGEVLMEHFIEGFGITQHKLAVAISVPPRRINEIVHGKRGITADTAMRLS RYFGTTPGFWMNLQMRYELDRAEDALGDTLSGSVPLTTVEVA >gi|292821672|gb|ACYT02000012.1| GENE 149 173108 - 176083 2685 991 aa, chain - ## HITS:1 COG:no KEGG:DIP0278 NR:ns ## KEGG: DIP0278 # Name: not_defined # Def: putative surface-anchored membrane protein # Organism: C.diphtheriae # Pathway: not_defined # 401 943 363 883 1080 117 28.0 2e-24 MQTSTSSLLLKAVRSRLTGVAVTLLAALAMVAHGLAAPAVAAVNPQIEVTDLSLTKVNAS NEEQSGELYVKGLALLTFNWDASKITPKEGDSFAISLPAEFKFHSTFAVPMKYDDQTVGQ CTVAGDTLTCAFDAGITPLVQAGNKDIRGTGKFQLGVVSHTSKEELPFIINRDKTVNVDL PGTGGIPKPTSSYRPDIQFYKSYIGVMKEGDTETNWYFNFGGPTFMKALGVTFDGQTEQT ITFKDTLGAGMTCPMTSIHLTAIESEENPSQWVLLDKGPEAGATTGAQGTFEVTGECEQM EADGTTPITIVAKGPFRAKTNYSISYKTLFVGGTALPGTDYTNSILVEGTKFRWKKTTNF AVAGSVEVEMRQGEGTFSVTKTIASDYVQHVDADVSFKVTFDYELPAGTTVDNYPKWTPP TNEDQSSTLNSDKRTGTATMVVKRGQETSFATPFPMGTTITNLREDTSTANPTLPAGYVW KDPKFTIGTGAGTSLTIEDQKTTKVDLLNTVGAADNGFQVIKTASGAEGADAKKYSFTYT CTLPDKTEKKGQITDVLGNSTPVSSPEKFPVGTTCVVTEDTEGAGIDGYTLDPVGHDAQN VTIGLVSEPTVAATFTNTYTLNKGSFSVKKVTKGAAFTGADNNFTVQYACTHDSVALTEE QKAGTLTVTGNGTAVQSPSLPFGTSCTIKENADTAQRAGYAVATAYSAGQVTVATATPNP EVTVTNTYTPLKGGFVISKTVDGDGAELAKDARFTFDYTCTPTSGVAQVKGTVVVKGGEN HAVSDVPVGSCSVSERDATINGASLSTVLTVDGSANGVNNGTAVFNVLDSATVKVAATNT YVRDRGSFSVAKAVVGGQDSFVQDTFVFDYVCADGTEGRLDVPGDGTIVEGPRVPTGTAC TLSERAQTANRDGYTVASELSNDGKVTITDKDVVVAVKATNTYTPVPTPKLPAKPLAKTG ASNVVVVAIVVSLLVGAGGALIVMKRRRRDL >gi|292821672|gb|ACYT02000012.1| GENE 150 176404 - 176571 62 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|296935093|ref|ZP_06906312.1| ## NR: gi|296935093|ref|ZP_06906312.1| tetratricopeptide repeat protein [Rothia dentocariosa ATCC 17931] # 1 54 1 54 55 88 81.0 2e-16 MTVRFGGPVSYHIGGGWGSETPNPVSDVPAYVIRGTDIPRVAVGDLNSVEFRFST >gi|292821672|gb|ACYT02000012.1| GENE 151 176568 - 177437 634 289 aa, chain - ## HITS:1 COG:SMc02296 KEGG:ns NR:ns ## COG: SMc02296 COG0286 # Protein_GI_number: 15964352 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Sinorhizobium meliloti # 1 288 189 526 526 298 47.0 7e-81 MFDPACGSGGMFVQCAKFVECHHEKASRKLSLFGTEKTGDTIPLAKMNLPLHGLSGDIRQ DNSYSEDPYKADNGNFIWIQQFYAALSAKGRAGFVMANSACDTGHSEKDIRQRLIESGTV DVMVAVGPNFFYTVTLPVTLWFLDKAKLGTAREDTVLFIDARHVFYQIDRAHRDFTAEQI EFISNIVRLYRGEHVQTVDGSNELLEQNFPGGQYVDVGGLCKIATRVEIQEQGWSLNPGR YIGTAAVDEEDVDFLSDLQRLYEEFTQLSDDADALRAKVDAAINGVLGL >gi|292821672|gb|ACYT02000012.1| GENE 152 177470 - 177925 599 151 aa, chain - ## HITS:1 COG:SMc02296 KEGG:ns NR:ns ## COG: SMc02296 COG0286 # Protein_GI_number: 15964352 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Sinorhizobium meliloti # 2 148 29 173 526 124 43.0 6e-29 MQYRDPVLGLVFLAYAEDRFESVRAAVDAGATSRNPANVADYRAKSVLYVPDESRLSYLV NLPEGKDVGKATDAAIKAIEETNLELKDVLPRGSQKLERSTLIELLRLFAPLPKQLEGDA FGFIYEDFLSNFAAQEGKGGGKYFTPYSTRV >gi|292821672|gb|ACYT02000012.1| GENE 153 178018 - 179100 1776 360 aa, chain - ## HITS:1 COG:Cgl1003 KEGG:ns NR:ns ## COG: Cgl1003 COG0012 # Protein_GI_number: 19552253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Corynebacterium glutamicum # 1 360 1 361 361 450 68.0 1e-126 MSLTIGIAGLPNVGKSTLFNALTRATVLAANYPFATIEPNVGVVPLPDPRLNKLAEIFGS QRILPATVSFVDIAGIVRGASEGEGLGNQFLANIREADAICQVTRAFSDPDVVHVDGKVD PASDIETIKTELILADMQTIEKQIPRLEKEVRGKKTEPIVLETARQALELLERGELLSGP EGAKLDQDALRSFQLMTSKPFIFVFNMDAAEMDNEEMKDELRALVAPAEAIFLDAQFEAE LVELDDEDAREMLAESGQDESGLDKLARVGFDTLGLQTYLTAGEKEARAWTIHKGDTAPK AAGVIHTDFEKGFIKAEVVSFDDLVEAGSMAAAKAAGKVRMEGKDYVMEDGDVVEFRFNV >gi|292821672|gb|ACYT02000012.1| GENE 154 179138 - 180205 1423 355 aa, chain - ## HITS:1 COG:ML1938 KEGG:ns NR:ns ## COG: ML1938 COG0761 # Protein_GI_number: 15828043 # Func_class: I Lipid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Penicillin tolerance protein # Organism: Mycobacterium leprae # 25 331 27 333 335 390 65.0 1e-108 MNENVDLRASAETPLPSSHGEGSGRILLAAPRGYCAGVDRAVDVVEKALELYGAPVYVRK EIVHNKFVVESLTKRGAIFVQETDEVPEGARVVFSAHGVSPAVHEAAATRHLATIDATCP LVTKVHREAVRFAKEDYDIILVGHQGHEEVEGTFGEAPDHIQVVGTPDEVDNVVVRDPSR VVWISQTTLSVDETRETVDRLRQRFPQLIDPPSDDICYATQNRQGAVKHIAPQVDVMVVV GSANSSNSVRLVEVALEAGAGAAYRVDKADELEESWFEGARTVGLTSGASVPEILVREVI EWLQERGFPTVEVARTETESTTFALPRDLRADLKKAGMAPARPHAPRVAGPNHTK >gi|292821672|gb|ACYT02000012.1| GENE 155 180494 - 181663 1143 389 aa, chain + ## HITS:1 COG:Cgl0996 KEGG:ns NR:ns ## COG: Cgl0996 COG1570 # Protein_GI_number: 19552246 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Corynebacterium glutamicum # 4 374 35 412 417 274 45.0 2e-73 MSPLWVEGQVVEYKVRPGAKMHFLTLRDLETDTSMTVTAWAGVMDSTPLTEGARVVTRVK PVFWERSGRLNLQAAEIHLQGVGDLLAQIEALRARLAAEGLFSDAHKKPLPFLPRTIGLI CGRNAKAKDDVVVNASDRWPSARFEIREVAVQGDHCVPEVGRALLELDAMDDVDVIVIAR GGGAVEDLLPFSDERLVRAVADARTPIVSAIGHEGDSPLLDLVADYRASTPTDAARRIVP DRAREHDGISQALTRMRGALGARLATERSNLTLIASRPVLQGPEAIVEGHRVALTQRVTA MRSAIERRLASERQQLTRSRATLTALSPQATLDRGYVLLKTPSGALITSSAQIKKGDLIE GILASGRMVAQVVGATNPTPPADAPNTGT >gi|292821672|gb|ACYT02000012.1| GENE 156 181714 - 181944 366 76 aa, chain + ## HITS:1 COG:Cgl0995 KEGG:ns NR:ns ## COG: Cgl0995 COG1722 # Protein_GI_number: 19552245 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Corynebacterium glutamicum # 4 66 13 75 81 60 53.0 9e-10 MTTNDQLPDPQSLGYEEARDELVRIVQTLEGGQAPLEDTLTMWERGEALAARCSQILDGA QARLSERTSTPSPEAR >gi|292821672|gb|ACYT02000012.1| GENE 157 181988 - 182923 1215 311 aa, chain + ## HITS:1 COG:mll7580 KEGG:ns NR:ns ## COG: mll7580 COG0524 # Protein_GI_number: 13476296 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Mesorhizobium loti # 9 311 2 307 307 155 35.0 9e-38 MTVQSGPHILAIGEALIDVVITYEQPDFPVEIPGGSPANVALTLGRLDRPVALATWIGLD ERGRLIDFHMYDSGVHVTGASRGASHTSTALARLDESGAASYTFDLEWAPAPPITVPPTA QIIEAGSISAIIEPGASAVLDALTRGREHALVCFDPNARPSIMGEPAAALASLERFIALA DVVKVSDEDIEWLTGGAPIDEVVDRWLGMGVSLVVVTHGKHGSLAVTSSGVRFTKTPSDV KVVDTVGAGDSFMGGMIDAMWGMGLRGADARATLRALPEEQVRAIIDRASAVSDVTVSRK GANPPWAHELS >gi|292821672|gb|ACYT02000012.1| GENE 158 183006 - 183767 1079 253 aa, chain - ## HITS:1 COG:ML2467 KEGG:ns NR:ns ## COG: ML2467 COG0020 # Protein_GI_number: 15828335 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Mycobacterium leprae # 7 253 12 262 262 248 52.0 7e-66 MAQWNMLYDMYERRLKAELSDAAVPAHIGVILDGNRRWAKSLGATASQGHRAGAGKISEF LQWSDDAGVSIVTLWLLSTDNLSRDAGELGELLRIICEAVSLLADQGRWKLAVVGDLSLL PEKVAEDLRASVARTAGVQGMTVNIAVGYGGRHEITEAVRSMMREASAQGRTLDELADSF TDADITAHVYTKDQPDPDLVIRTSGEQRLSGFMLWQSVHSEYYFCEVYWPDFRRVDFLRA LRSYAQRERRMGK >gi|292821672|gb|ACYT02000012.1| GENE 159 183955 - 184638 988 227 aa, chain + ## HITS:1 COG:MT1117 KEGG:ns NR:ns ## COG: MT1117 COG1272 # Protein_GI_number: 15840522 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Mycobacterium tuberculosis CDC1551 # 17 225 30 242 242 151 42.0 1e-36 MRIASLTPKEWFSGQLVQIKPKLRGWLHLAAAPLSLAASIVLVCLAPTTPTKIGSAVYLA CSLILFGVSAAYHRFYWAPRWEIMWKRLDHSNIFLLIAGTYTPITIALLDRFDATVLLSV VWGGAIAGILLNLFWPSAPRWLTTFVYVALGWVAVWYLPQLWAGGGPIVVWLIVAGGVLY TLGAVVYGTKKPDPSPTWFGFHEIFHAFTVAAWACHCVAVYLAVLNS >gi|292821672|gb|ACYT02000012.1| GENE 160 184754 - 185233 754 159 aa, chain + ## HITS:1 COG:MT1111 KEGG:ns NR:ns ## COG: MT1111 COG0782 # Protein_GI_number: 15840516 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Mycobacterium tuberculosis CDC1551 # 1 157 1 162 164 116 42.0 2e-26 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALVAGREQKFLLGSRDAGGDLGIQVFSA QAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILDAKPFEG >gi|292821672|gb|ACYT02000012.1| GENE 161 185345 - 186829 1473 494 aa, chain - ## HITS:1 COG:MT0215 KEGG:ns NR:ns ## COG: MT0215 COG0628 # Protein_GI_number: 15839585 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Mycobacterium tuberculosis CDC1551 # 52 412 8 357 367 195 35.0 1e-49 MADTQEQPRWKLSDLIGRLSAALPSKHADEPAPAPVMVSVREEHEDERDVAAAVPRTLRV AAAISWRTLVVAGLVLAVLWGIARLTIVIMPVAIALTVAVLLEPLVSWMRRRLHFPSSLA ATVGLLVFFAVVAGALSQAAAELIQQVPQLASEAADGFRKLLDAIVHNEFLQDGPLKIDT TVLTAAAEQLRSELVNWLNSNKETLATGALSITSSVGTLATSGLTMLFCLFFFLKEGRSI WLWCVRLLPAPARVPVHESAIRGWATFGSYVRTQIQVAAIDAIGIALGAFFLGVPLAIPI GVITFFAAFVPILGALTSGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSN AVSLHPVAVMLVITAGSAIAGIAGAVFSVPIAAFINATVMYLHGYDPMPELATAEDRPGG PPGMLEEKIAASYAGKPDTRPYVAREELSEDEVVASVDLHVEARVESEGDATQEETPADE KQKPGEPPTPHVEV >gi|292821672|gb|ACYT02000012.1| GENE 162 186929 - 187555 660 208 aa, chain + ## HITS:1 COG:AGc197 KEGG:ns NR:ns ## COG: AGc197 COG0225 # Protein_GI_number: 15887479 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 202 44 225 228 176 50.0 3e-44 MTSFFKQAHTNVHVSTHAVLGSNMRDEARAGQEVIYLAAGCFWGVEKALWNAPGVVTTAT GYMGGHSTNPTYEQVCSHSTGHAETVRVVFDTALTSAADLVRLFFEIHDPTQVGGQGNDI GDQYRSAIWTTTPEQLRDATALRTAYQEVLTKRGFGPIQTVISPAPDADSTARFWYAEDY HQQYLFKNPGGYECHARTGVACPALPHE >gi|292821672|gb|ACYT02000012.1| GENE 163 187623 - 188021 745 132 aa, chain - ## HITS:1 COG:DR1839 KEGG:ns NR:ns ## COG: DR1839 COG0545 # Protein_GI_number: 15806839 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Deinococcus radiodurans # 23 131 45 151 152 89 44.0 2e-18 MENISVADEFGRKPTLSFDGTPSDELVVEVLHGGDGQVVEAGDTITCHYYGAVFGSDVDF DNSFDRGGALSFQIGVGMVIPGWDEGLVGKRVGDRVLLSIPSELGYGDRGVPQAGIPGGA TLVFVTDILGVN >gi|292821672|gb|ACYT02000012.1| GENE 164 188055 - 189035 1388 326 aa, chain - ## HITS:1 COG:XF2760 KEGG:ns NR:ns ## COG: XF2760 COG4760 # Protein_GI_number: 15839349 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Xylella fastidiosa 9a5c # 97 326 25 253 253 94 31.0 3e-19 MANPVMNSIVKDWSTQSTTPAGYPEMPGYQPASAQAQNPYTGATNPYGTQQGVDYSGQPV YGTAQAGAEGYPVSSSYEEQMASYEAMMNAPAADAVDRGTMTYDDVVVKSLICFGLLLMG ATAGWLTGIVTLGAAMLVALGACVVTLGLGLFIRFSKTVRPAAIIAYSLIEGFVLGALSF AFELMYPGIVVTAVVATLVVIGVTLAAFTMGFVRNSSTLARVAGIGCTAFFFYYMASFVL SVTGLVDMTAVNNAKIFGIPLGIIIGVLAVFIGVLCLVRDFDTVKVGVANNVPEKYSWLC TFAIMTDVIWIYLEILRILSYLMRRD >gi|292821672|gb|ACYT02000012.1| GENE 165 189317 - 190285 1156 322 aa, chain - ## HITS:1 COG:MT1054 KEGG:ns NR:ns ## COG: MT1054 COG0248 # Protein_GI_number: 15840454 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 1 321 3 317 319 196 44.0 4e-50 MTRVAAIDCGTNSIRLLVADGHIGEDGRPHLCDLTRQMRIVRLGQGVDARGYLDPAAIER TVEAVVEYQRMIEALGATSTRFVATSATRDASNSADFVRQIKAIIGVEPEVVVGTEEASL SFNGAVSGLGESVTAPMLVVDIGGGSTELVLGATRVEQAISIDMGAVRVTEKFFSHVDPA GGVPVEDQERAIAWIDEQLDGAEKSVDLARVRSLVGVAGTVTTLTAQALGLTSYQPERIH GARLSAAQFEEAVRFMVDQPTSVKASLGFMPEGREDVIAAGALIWSRIVTRVLARAEAAG HPIEQVITSEHDILDGIAQAMI >gi|292821672|gb|ACYT02000012.1| GENE 166 190347 - 190856 514 169 aa, chain - ## HITS:1 COG:MT1053 KEGG:ns NR:ns ## COG: MT1053 COG1507 # Protein_GI_number: 15840453 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 13 156 6 147 163 159 61.0 2e-39 MSLVNTTDATEEDLEVLRSQLGRVPRGVVGIAARCVCGRPTVVATAPRLPDGTPFPTTYY LTHPAAVKGASTLEAEHVMETLNEDLAADEELRAAYARAHEAYIQARLTLGDVPEISGVS AGGMPTRVKCLHALVGHSLAAGPGVNPIGDRALAMLDERGLFSTSRCSC >gi|292821672|gb|ACYT02000012.1| GENE 167 190853 - 191614 541 253 aa, chain - ## HITS:1 COG:no KEGG:Bcav_1019 NR:ns ## KEGG: Bcav_1019 # Name: not_defined # Def: septum formation initiator # Organism: B.cavernae # Pathway: not_defined # 106 191 1 86 136 70 38.0 4e-11 MASRRPSSRPSSHRRSSASEAARTTREINAEKSRQRRAAAKASKSSKRAEASAKRQKSAR GAQKNEGAKRSFFRRNKGAEKGTSRSSFVRPAAEGSSVLSIGGLDVSTRLLVVLIVAAIL SVMLVPSLYQWWQQERELAQIKTQVAEQQQKNADMQRQLDLWNDPDYISTQARERLGFVR PGETQYTVVDPGPQYQDSALAAAAASTGPARPWVHQLGILVGKADQPPSATPIPSAESSQ SGQAPTTSQESGE >gi|292821672|gb|ACYT02000012.1| GENE 168 191721 - 193061 2097 446 aa, chain - ## HITS:1 COG:Cgl0949 KEGG:ns NR:ns ## COG: Cgl0949 COG0148 # Protein_GI_number: 19552199 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Corynebacterium glutamicum # 22 446 1 424 425 558 72.0 1e-159 MAVRITVVLTASTQQHRLENDVAVIEGIGAREILDSRGNPTVEVEVVLEDGTAARASVPS GASTGAFEAVERRDGDKGRYLGKGVQDAVDAVVEQIAPELIGEEADDQRYIDQAMLDLDG TPNKGKLGANAILGVSLAVAKAAAKYADLPLYKYLGGPNAHVLPVPMMNILNGGSHADSN VDIQEFMIAPIGAPSFREALRWGAEVYHTLKGVVKERGLSTGLGDEGGFAPNLDSNAEAL DLIVSAIEKAGLKPGEDVALALDVASSEFFKDGLYQFEGEGRSTDYMVEYYEKLISNYPL VSIEDPLSEDEWDAWKALTSEIGGRVQLVGDDLFVTNPARLKKGIELGAANALLVKVNQI GSLTETLDAVEEAHRNGYRSMTSHRSGETEDTTIADLAVATNSGQIKTGAPARSERVAKY NQLLRIEEQLGEAGVYAGRSAFPRFK >gi|292821672|gb|ACYT02000012.1| GENE 169 193181 - 193771 569 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507722|ref|ZP_02043364.1| ## NR: gi|154507722|ref|ZP_02043364.1| hypothetical protein ACTODO_00204 [Actinomyces odontolyticus ATCC 17982] # 1 196 3 198 198 281 96.0 1e-74 MRYTRQLATAALIVAAGLGMGACSAHPGAAVITNNGDYSIAEVDEAVSQIAAVTGGQSSI GAYQVRASLMNEPQLVAVADSVGISVTDEQVDQAIEQIATQTGAQVPVIGRGTRATVRSL LLNQQLSQVAQVNPGAVSAMNEAFEQARAAANARINPRFSQPTLGGGQAPTMPLFGDAVS GAKDDPTAALLGGSAQ >gi|292821672|gb|ACYT02000012.1| GENE 170 193832 - 196135 2770 767 aa, chain - ## HITS:1 COG:Cgl0938 KEGG:ns NR:ns ## COG: Cgl0938 COG1197 # Protein_GI_number: 19552188 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Corynebacterium glutamicum # 30 762 438 1188 1214 850 58.0 0 EGPGPGRRIRSILIDASCPAALADNVEARPDPGLVTITTAQAGVGFVTPHLKVAILTEGD LTGRAGASTRDMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAAST RDYLVIEYAPSKRGQPADRLFVPTDALDQISKYTGSDDPSLTKMGGADWAKTKARAKKAV NEVAKELIRLYAVRQQTKGHAFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKPVP MDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFAERYAGFPVRIG TLSRFSTPKETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRFGVEHKET LKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTDAQVSAA IRRELLRDGQVFYVHNRVDSISSVAAHITELVPEARVRTAHGKMNEHQLEAVIQDFWNHE FDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAYAYFFYPGDKA LTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVEGVGFDLYVRMVSD AVAAYRGDAPTEKTDVRMDLQVDAHIPDGYVRGERLRLEVYAKIAAISTPEQEADVREEL VDRYGPIPPQVDLLFAVARLREIVRRAGITEIVTQGKYLRVSPVELRDSQVMRLKRLHPG TVIKAAVRQVLVPLPLTSRVGGSPLTDGPLLEWVEILVTKILVPFGE Prediction of potential genes in microbial genomes Time: Tue May 17 06:00:11 2011 Seq name: gi|292821668|gb|ACYT02000013.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.20, whole genome shotgun sequence Length of sequence - 3016 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 11/0.000 - CDS 82 - 1281 1597 ## COG0438 Glycosyltransferase 2 1 Op 2 . - CDS 1274 - 2593 1650 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 3 1 Op 3 . - CDS 2620 - 2997 548 ## Arch_0081 LicD family protein Predicted protein(s) >gi|292821668|gb|ACYT02000013.1| GENE 1 82 - 1281 1597 399 aa, chain - ## HITS:1 COG:L14736 KEGG:ns NR:ns ## COG: L14736 COG0438 # Protein_GI_number: 15672195 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Lactococcus lactis # 11 395 6 375 379 251 35.0 2e-66 MTDRPHSPVKVGIFMEFFLPYLGGIERYQDRLSEQLRALGYDLFIVTSLHDESLPRFENK DGLRIYRLPTKGLFKQRYPFFKRDERFKETMAAVEAENADFYIVNTRFHLTSLLGARLAH RLGRPVALIEHGTAHMSVGNPMLDFFGGIYEHGLTHFVKKHVTSYYGVSRNCNKWLRHFG IEASGVWYNAVTPEDTAVADDRYEREWPRGGADSEIVISYAGRLIAEKGIIALLDAFARL RAELPNIPLRLAVAGSGPIEDELHERYGSDPAVSFLGKLDFPAVMSLYRRSDVFVYPSMY PEGLPTSILEAALGDCAIVATPRGGTEEVITSPALGWIVDGRTSAELTDALVPALREAVT DPVRRASCAAAVGTRVREHFTWQSVAREVASVIDEAVAR >gi|292821668|gb|ACYT02000013.1| GENE 2 1274 - 2593 1650 439 aa, chain - ## HITS:1 COG:SPy0797 KEGG:ns NR:ns ## COG: SPy0797 COG2244 # Protein_GI_number: 15674839 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Streptococcus pyogenes M1 GAS # 27 424 12 414 428 160 27.0 5e-39 MPPNSGDAQVEATEEALESRGQLGRDYLWNTAASLMSSLAVVIMGVAIMRSGATDSFARA QYGLFTLALAIGQQYQTVGLYEVRTFHVTDVRRRFDFGTYLSTRLLTCLVMVGLIAYHSW TASTKDPYPAFTVIAAVALLRIFDAFEDVYYSEFQRSGRLDIAGKACFARIFTTTFLWSG LYWFTQDLLVSTIITFAVTCVVLVVAYGLPARGVFPLLPSFNLRGIAGILWECLPLFIAA FLNQYLANAPRFAIHASLGDEELGVFAIIYMPAVAINMLSLFVFRPLLTRMALRWAEGKR EEFLSIVRRGLLTTAAAFVVVAAVTYVIGAPLLTLVFGTDVSGYVGELMVLVLAGALNAA GVILYYALATMRRLRAVLVAYAAAGATAYLIAPMLTMSHAMMGASLAYAATMGLLAILFV IFMLIPAPRATIETEPVND >gi|292821668|gb|ACYT02000013.1| GENE 3 2620 - 2997 548 125 aa, chain - ## HITS:1 COG:no KEGG:Arch_0081 NR:ns ## KEGG: Arch_0081 # Name: not_defined # Def: LicD family protein # Organism: A.haemolyticum # Pathway: not_defined # 5 112 181 282 286 117 54.0 2e-25 MACAHWGMRALRVNEASLYRRWLRAALKGRENPQKAADGSILFGDFSTRDPRRWSASEAE LFPARSVPFEDITVRIPAAYDVVLTRGYGDYMRIPDPQDRVTHEPFHIIFGPNDPGPDAP EEAGA Prediction of potential genes in microbial genomes Time: Tue May 17 06:00:17 2011 Seq name: gi|292821659|gb|ACYT02000014.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.21, whole genome shotgun sequence Length of sequence - 9206 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 3, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/1.000 - CDS 3 - 513 631 ## COG3475 LPS biosynthesis protein 2 1 Op 2 . - CDS 545 - 1402 1166 ## COG3475 LPS biosynthesis protein - Term 1412 - 1452 10.3 3 2 Op 1 3/1.000 - CDS 1459 - 2433 1193 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 4 2 Op 2 . - CDS 2430 - 4259 2866 ## COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes 5 2 Op 3 . - CDS 4354 - 5904 1255 ## Arch_0077 protein of unknown function DUF2142, membrane 6 2 Op 4 . - CDS 5933 - 7096 1530 ## COG0438 Glycosyltransferase 7 3 Op 1 6/1.000 + CDS 7196 - 8311 1021 ## COG0438 Glycosyltransferase 8 3 Op 2 . + CDS 8395 - 9205 772 ## COG1216 Predicted glycosyltransferases Predicted protein(s) >gi|292821659|gb|ACYT02000014.1| GENE 1 3 - 513 631 170 aa, chain - ## HITS:1 COG:SP1273 KEGG:ns NR:ns ## COG: SP1273 COG3475 # Protein_GI_number: 15901133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 8 134 5 128 267 73 35.0 1e-13 MSAAAPSTLAAIQRVTKRCLAEIDRVCTLLDIRYVAYGGTAIGAVRHRGFIPWDDDGDVC MPRADYERFIAEAPALLGEEFFIASPATHPDYPISFGVLGLKGSEFVSKVAKDRSFRMPI GVDLFVLDEIADDPGRFRAQSRGTWLWARLMFLRSIPNPPTGLPTPARQL >gi|292821659|gb|ACYT02000014.1| GENE 2 545 - 1402 1166 285 aa, chain - ## HITS:1 COG:SP1273 KEGG:ns NR:ns ## COG: SP1273 COG3475 # Protein_GI_number: 15901133 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 18 272 16 259 267 106 31.0 4e-23 MTTPDHDLRKVQKLLTLILAELDRVCRRIGVSYAIYGGTAIGAIRHGGFIPWDDDIDVMM TRADYERFLAEAPALLDDRFRLDNTRTRDDFPFMFTKMVMPGTLLIPEADKDSKYRMPFF LDILPLDEIPDDDKAFQEMSRQSWLWGRLLFLQGTPRPHLINTPAWKKALIFSATTLAHL GLKAVRATPASLQARWERAVRRYEGTGTGVYADFTMRDPQNWIVREEEFFPTRDVPFEDI TVMIQNEYDALLRRGYGDYMQLPPPEKRYNHEAAVIDFGPYADNL >gi|292821659|gb|ACYT02000014.1| GENE 3 1459 - 2433 1193 324 aa, chain - ## HITS:1 COG:FN1236 KEGG:ns NR:ns ## COG: FN1236 COG0697 # Protein_GI_number: 19704571 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 11 306 12 312 322 129 29.0 8e-30 MKTQHGGKRYGIFSGALWGLDTVVLAIALAMTPFANFGQSALAGAVLHDVACAVILLVYM AVRGRLRDTAVALRTRPGMSVIVAALLGGPIGMSGYLIAIDNIGPGLTAIISTFYPALGT LLAFILLKERMAPRQIAALLVALAAIVATGWSATSEPIEGGNALLGVVGALACVIGWGSE AVILTWGMRDEAVDNEVALQIRETTSAVVYLFIVAPIAGVFGFTLHSLAHLSAGVVTLAG LAGTASYLFYYKALSAIGASRGMALNISYSAWAIIFALVLQGTVPTATQVVCCVVILVGT VLAATSNWGDLLPKRTEKVTSSQA >gi|292821659|gb|ACYT02000014.1| GENE 4 2430 - 4259 2866 609 aa, chain - ## HITS:1 COG:FN1668 KEGG:ns NR:ns ## COG: FN1668 COG4750 # Protein_GI_number: 19704989 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes # Organism: Fusobacterium nucleatum # 77 348 5 274 290 271 48.0 2e-72 MPTTNVGTLSEPQFNILNALAKADSPLTQRALSEATGMSLGRVNTATRECEAAGYTDERA ITDAGREALEPYRVTGAVIMAAGLSSRFAPISYERPKGTLKVRGEILVERQIRQLHEAGI TNIALVVGYKKEYFFYLADKYGVDIVVNREYSTRNNNGSLWLVKDRLDNTYVCSSDDYFT TNPFESYVYKAYYSANYVEGPTDEWCIKTGPGDRITGATVGGADAWVMLGHVYFDRVFSA KFREILEQVYHLPETVSKLWESIYLDHIKSFDMVIRRYPDGVIHEFDSVDELRTFDPLFM ENVDSEVFDHIVATLGCQKSDICDFYPLKQGITNLSCHFTVGDDEYVYRHPGIGTEKIVD RSAEFAGLRLAAELGIDDTFLTGDPAAGWKISRFVRDVRNLDVTRPEELKSAMEMDRALH TSGRVLDRSFDFVTEGLRYEGLLKAFGPIDVPGYFELRDKVLRLKAFADADGFDKVPSHN DFFPPNFLVDEDGKISLIDWEYAGMSDMAADFGTMVVCTPEMTRERAAAALEYYLGHDPS EREARHFFAYEVFAGWCWYLWALVKEAEGDDVGEWLYTYYSHATRTLDSLLAAYEAASST QISTEGELA >gi|292821659|gb|ACYT02000014.1| GENE 5 4354 - 5904 1255 516 aa, chain - ## HITS:1 COG:no KEGG:Arch_0077 NR:ns ## KEGG: Arch_0077 # Name: not_defined # Def: protein of unknown function DUF2142, membrane # Organism: A.haemolyticum # Pathway: not_defined # 2 510 11 492 508 287 37.0 9e-76 MSTSDPQRRTFIAAFVLVAAAIVASLAWVIASPVGSSPDEDFHVGSMWCPPPVDETGCQI STKDGEKAVMVPQSLAKEYVTCYAFDHNNSALCALNASDEELAPTLRWDDGNYPWGYYQF AHLFVQRSTSHAVLALRTVNTLLAVGLIGAIIALADSGLKRAISVAVTVAWLPMGFYFVA GMNPSSWAMTGTFAFTAGLLAATRSVGPRRVGLIACAVAGAVMACTSRGDSAFFLFVITV ALAFAVPMSKRVVPEAALACVASVVGIWVMARTNVAASHLGSSNEMAGYSLSHILWLNVS ALPTYLRGFVGHGLGPGWNDVSYRGTVSFGASLVVLAVLCWSLRQLTWRKALSAITVFGA ITGVPVVIGLRGHFNNVHVYQPRYMLPLFAVFLLMLLAPSPTRAGDGRRVGSEAFRFPTS IAGRVGTDLVATLWALVNARALYLVIERYAFGRTQHGYPIDLSTRNLSAGNEWWWPTAPI GPMAVWILGSLAGALAIGLAVFLWQRSPDKAPEPRR >gi|292821659|gb|ACYT02000014.1| GENE 6 5933 - 7096 1530 387 aa, chain - ## HITS:1 COG:BMEI1404 KEGG:ns NR:ns ## COG: BMEI1404 COG0438 # Protein_GI_number: 17987687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Brucella melitensis # 15 380 1 364 372 135 29.0 9e-32 MGMIVAHSVSHSHPIRVLLDGTAIPADLGGVGRYVDDLVPELVEQGVDLTMAVQERDAEH FATRLPSARIIPISQRFESRPARMAWEQTGLPKLIRKVRPDVLHSPHYTSPQFPGVPVVI TLHDATFFSHPQAHSRLKQRFFTAAIRRAIRRADALVVPSLATRDETIKYAGGDPSQFYV AYHGVDRSIFHPVSDAERERVKASLGLEGRDYIGFLGTLEPRKNVPNLVRGWVKAVSDRP NPPALVLAGGKGWDEDIDPALASVPEHLTVLRPGYLPLEDLPGFLSGCVILAYPSIAEGF GLPVLEAMSCGAATLTTRLTSLPEVGGDAVAYCDIDPDSIAQALTELLDDPARREALGAA AIPRADEFTWARAASVHIEAFRAAARS >gi|292821659|gb|ACYT02000014.1| GENE 7 7196 - 8311 1021 371 aa, chain + ## HITS:1 COG:DRA0039 KEGG:ns NR:ns ## COG: DRA0039 COG0438 # Protein_GI_number: 15807709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Deinococcus radiodurans # 106 357 70 327 343 115 32.0 1e-25 MSVNVGMVVEQMWQPVPGGSGRYIVEVADRLADQGVRAIGIAARRGAGEPTPSEVGLTIP VLNSALPRRALYAAWDRLGTPSVDRMLGVGSGGGAAVVHATTWAIPPTSRPLVVTVHDVA FLRDPDHFTAHGSAYFHRALEITRKRADAIIVPSQATADDCIEAGLDASRITVIPHGLSH TPVTDAQVEEFRSRHGLERPYVLWVGTREPRKNLPTLLAAYEQMRGTDLGLVLVGPAGWG TDPTDAPLPPERVHVLGRLDDADLACAYAGSRVFTFPSIWEGFGLPVLEAMAHGTPVVTS ADTCMAEITGSDAGLLVPATDASALAEALEAAAGSEHDRLAAAGIERAGDYTWEASAAAH AAIYASLAGDR >gi|292821659|gb|ACYT02000014.1| GENE 8 8395 - 9205 772 270 aa, chain + ## HITS:1 COG:CC3632 KEGG:ns NR:ns ## COG: CC3632 COG1216 # Protein_GI_number: 16127862 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Caulobacter vibrioides # 8 252 45 252 341 69 28.0 6e-12 MGEGDHLVIVDNGSDDDSLIVLREGLDELRSVADPARVSLVNAGTNDGFGAGVMAGAAGL SEDAVVLLNNDATVRDGFLDALLAPLGEAVGATTALILLTGTWRPSTPSDMEFLVARDGS RWTRVADGDSGGQVLINSTGNEVDHAGNGYDRSWLDPANSPLPAPEVFGLCGGACAIDAD AWRAVGGVRTDLFMYYEDTDLSYKLREAGYEVRFVAGAVVDHEHAASSGTSSPMFLRVNA RNRIIVAAQHAPWGVVARAIARSIARAVRS Prediction of potential genes in microbial genomes Time: Tue May 17 06:01:13 2011 Seq name: gi|292821499|gb|ACYT02000015.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.22, whole genome shotgun sequence Length of sequence - 159705 bp Number of predicted genes - 153, with homology - 129 Number of transcription units - 74, operones - 36 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.286 + CDS 163 - 1014 1214 ## COG0451 Nucleoside-diphosphate-sugar epimerases 2 1 Op 2 . + CDS 1019 - 2881 2651 ## COG3754 Lipopolysaccharide biosynthesis protein 3 1 Op 3 . + CDS 2878 - 4149 1893 ## COG1835 Predicted acyltransferases 4 1 Op 4 . + CDS 4146 - 5447 1699 ## Namu_4197 hypothetical protein 5 1 Op 5 26/0.000 + CDS 5476 - 6330 1447 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 6 1 Op 6 . + CDS 6330 - 7622 1875 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component + Term 7643 - 7691 8.1 7 2 Tu 1 . + CDS 7773 - 9314 1857 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Term 9311 - 9365 14.8 8 3 Op 1 . - CDS 9383 - 10426 1424 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 9 3 Op 2 . - CDS 10423 - 11976 1885 ## Arch_0077 protein of unknown function DUF2142, membrane 10 3 Op 3 . - CDS 12061 - 12654 689 ## HMPREF0573_10943 hypothetical protein + Prom 12746 - 12805 1.6 11 4 Op 1 . + CDS 12862 - 13869 1569 ## COG1088 dTDP-D-glucose 4,6-dehydratase 12 4 Op 2 . + CDS 13874 - 14848 780 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 13 5 Op 1 . - CDS 14853 - 15566 680 ## gi|293189423|ref|ZP_06608143.1| hypothetical protein HMPREF0970_00457 14 5 Op 2 . - CDS 15595 - 15792 174 ## + Prom 15694 - 15753 3.4 15 6 Op 1 . + CDS 15782 - 16078 448 ## MAB_3606c WhiB family transcriptional regulator 16 6 Op 2 . + CDS 16171 - 19239 2465 ## HMPREF0573_11079 glycosyltransferase 17 6 Op 3 . + CDS 19272 - 20780 1056 ## TWT125 hypothetical protein 18 7 Tu 1 . - CDS 20789 - 21094 273 ## Bcav_1214 hypothetical protein 19 8 Tu 1 . + CDS 21281 - 21739 433 ## Bcav_1215 hypothetical protein 20 9 Tu 1 . - CDS 21736 - 22566 541 ## COG1714 Predicted membrane protein/domain 21 10 Tu 1 . + CDS 22585 - 23577 1293 ## COG1300 Uncharacterized membrane protein + Term 23609 - 23646 4.0 22 11 Op 1 23/0.000 - CDS 23620 - 24951 1067 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 23 11 Op 2 . - CDS 24959 - 26110 1413 ## COG0714 MoxR-like ATPases 24 11 Op 3 . - CDS 26103 - 27254 993 ## SCAB_55241 hypothetical protein 25 11 Op 4 . - CDS 27251 - 27883 624 ## Gbro_4819 hypothetical protein 26 11 Op 5 . - CDS 27880 - 29175 1491 ## Ndas_3746 glycerophosphoryl diester phosphodiesterase, membrane domain protein + Prom 29155 - 29214 1.6 27 12 Op 1 40/0.000 + CDS 29318 - 30001 734 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 28 12 Op 2 . + CDS 29982 - 31601 1424 ## COG0642 Signal transduction histidine kinase 29 12 Op 3 . + CDS 31613 - 33244 1270 ## HMPREF0573_10408 lipoprotein LpqB 30 12 Op 4 . + CDS 33280 - 33996 231 ## HMPREF0573_10407 hypothetical protein 31 13 Op 1 7/0.000 + CDS 34171 - 34815 556 ## PROTEIN SUPPORTED gi|227384070|ref|ZP_03867487.1| SSU ribosomal protein S30P + Term 34860 - 34917 8.6 + Prom 34884 - 34943 3.1 32 13 Op 2 . + CDS 34998 - 37844 3736 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 37858 - 37905 17.8 33 14 Op 1 . - CDS 37927 - 38418 182 ## gi|293189442|ref|ZP_06608162.1| conserved hypothetical protein 34 14 Op 2 . - CDS 38415 - 39137 664 ## gi|293189443|ref|ZP_06608163.1| mannose-binding lectin - Prom 39211 - 39270 2.3 + Prom 39165 - 39224 3.3 35 15 Tu 1 . + CDS 39267 - 39830 304 ## gi|154509494|ref|ZP_02045136.1| hypothetical protein ACTODO_02026 + Term 39847 - 39880 -1.0 36 16 Tu 1 . - CDS 39827 - 40039 371 ## Xcel_2501 prophage CP4-57 regulatory - Prom 40167 - 40226 1.9 37 17 Op 1 . + CDS 40038 - 40133 62 ## 38 17 Op 2 . + CDS 40164 - 40820 555 ## gi|293189446|ref|ZP_06608166.1| SAF domain protein 39 17 Op 3 . + CDS 40817 - 42004 674 ## HMPREF0573_10400 ATPase family protein involved in chromosome partitioning 40 17 Op 4 . + CDS 42007 - 42477 717 ## gi|154509490|ref|ZP_02045132.1| hypothetical protein ACTODO_02022 41 18 Op 1 28/0.000 - CDS 42481 - 45555 2751 ## COG0419 ATPase involved in DNA repair 42 18 Op 2 . - CDS 45552 - 46757 1274 ## COG0420 DNA repair exonuclease 43 19 Tu 1 . + CDS 46859 - 47587 1085 ## COG0518 GMP synthase - Glutamine amidotransferase domain - Term 47691 - 47741 7.1 44 20 Op 1 . - CDS 47759 - 48022 135 ## 45 20 Op 2 . - CDS 48030 - 48413 338 ## gi|293189453|ref|ZP_06608173.1| conserved hypothetical protein - Prom 48501 - 48560 5.7 46 21 Op 1 4/0.000 - CDS 48562 - 49647 1199 ## COG1162 Predicted GTPases 47 21 Op 2 . - CDS 49647 - 50999 1405 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 48 21 Op 3 . - CDS 50996 - 51523 643 ## Arch_0328 DoxX family protein 49 22 Tu 1 . + CDS 51446 - 51619 57 ## 50 23 Op 1 . + CDS 51722 - 52354 749 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 51 23 Op 2 . + CDS 52363 - 52650 337 ## gi|293189458|ref|ZP_06608178.1| putative anti-sigma factor RshA 52 24 Tu 1 . - CDS 52792 - 53142 74 ## - Term 53316 - 53366 7.2 53 25 Tu 1 . - CDS 53381 - 54013 74 ## gi|293189460|ref|ZP_06608180.1| conserved hypothetical protein 54 26 Tu 1 . + CDS 53978 - 54148 96 ## 55 27 Tu 1 . + CDS 55128 - 56012 1075 ## COG0657 Esterase/lipase + Term 56083 - 56127 -0.8 56 28 Op 1 . - CDS 56105 - 56773 516 ## gi|293189462|ref|ZP_06608182.1| conserved hypothetical protein 57 28 Op 2 . - CDS 56809 - 56955 101 ## 58 29 Tu 1 . + CDS 56879 - 57058 153 ## gi|154509475|ref|ZP_02045117.1| hypothetical protein ACTODO_02007 - Term 57262 - 57300 -0.8 59 30 Tu 1 . - CDS 57389 - 58162 575 ## gi|293189465|ref|ZP_06608185.1| conserved hypothetical protein 60 31 Tu 1 . - CDS 58304 - 58903 265 ## gi|293189466|ref|ZP_06608186.1| conserved hypothetical protein 61 32 Tu 1 . + CDS 58854 - 58994 105 ## + Term 59203 - 59228 -0.5 62 33 Op 1 . - CDS 59318 - 59920 648 ## COG2755 Lysophospholipase L1 and related esterases 63 33 Op 2 . - CDS 59972 - 63886 5027 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes + Prom 63885 - 63944 1.6 64 34 Op 1 . + CDS 64055 - 64156 79 ## 65 34 Op 2 7/0.000 + CDS 64153 - 65481 1779 ## COG1253 Hemolysins and related proteins containing CBS domains 66 34 Op 3 . + CDS 65478 - 66512 1183 ## COG1253 Hemolysins and related proteins containing CBS domains 67 34 Op 4 . + CDS 66557 - 67540 955 ## COG0739 Membrane proteins related to metalloendopeptidases 68 34 Op 5 . + CDS 67537 - 68364 1029 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 68377 - 68427 14.4 69 35 Op 1 . - CDS 68497 - 69261 342 ## gi|293189473|ref|ZP_06608193.1| toxin-antitoxin system, antitoxin component, Xre family 70 35 Op 2 . - CDS 69258 - 69731 199 ## gi|293189474|ref|ZP_06608194.1| hypothetical cytosolic protein 71 35 Op 3 . - CDS 69746 - 70168 503 ## gi|293189475|ref|ZP_06608195.1| conserved hypothetical protein 72 35 Op 4 . - CDS 70179 - 71270 662 ## gi|293189476|ref|ZP_06608196.1| conserved hypothetical protein - Term 71702 - 71742 13.0 73 36 Tu 1 . - CDS 71770 - 73188 1977 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases - Prom 73217 - 73276 2.5 74 37 Op 1 . + CDS 73247 - 73480 66 ## - TRNA 73358 - 73433 85.8 # Arg CCG 0 0 75 37 Op 2 . + CDS 73534 - 73989 591 ## COG0698 Ribose 5-phosphate isomerase RpiB 76 37 Op 3 . + CDS 74050 - 74355 100 ## 77 38 Tu 1 . + CDS 74865 - 75206 125 ## - Term 74993 - 75018 -0.5 78 39 Tu 1 . - CDS 75030 - 76289 1820 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 79 40 Op 1 4/0.000 + CDS 76460 - 78139 2433 ## COG0018 Arginyl-tRNA synthetase 80 40 Op 2 . + CDS 78144 - 79544 1636 ## COG0019 Diaminopimelate decarboxylase + Term 79639 - 79670 0.2 81 41 Tu 1 1/0.286 + CDS 79683 - 81764 2645 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 81862 - 81907 1.1 + Prom 81861 - 81920 2.0 82 42 Tu 1 . + CDS 81998 - 86314 5272 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 86440 - 86494 2.8 83 43 Op 1 . + CDS 86546 - 86812 292 ## gi|293189487|ref|ZP_06608207.1| DNA polymerase II large subunit 84 43 Op 2 . + CDS 86911 - 87240 121 ## Arch_0338 hypothetical protein 85 43 Op 3 . + CDS 87131 - 87259 157 ## 86 43 Op 4 . + CDS 87278 - 87529 231 ## HMPREF0573_10446 hypothetical protein + Term 87629 - 87678 -0.5 87 44 Op 1 . - CDS 87958 - 88170 253 ## 88 44 Op 2 . - CDS 88146 - 88703 324 ## 89 45 Tu 1 . - CDS 88832 - 89149 241 ## - Prom 89212 - 89271 1.9 90 46 Tu 1 . - CDS 89284 - 89484 265 ## 91 47 Tu 1 . - CDS 89692 - 89892 149 ## - Prom 90057 - 90116 1.7 92 48 Tu 1 . - CDS 90143 - 90301 181 ## - Prom 90414 - 90473 4.3 93 49 Op 1 . - CDS 91229 - 91528 287 ## 94 49 Op 2 . - CDS 91566 - 91703 83 ## 95 50 Tu 1 . - CDS 92464 - 92814 68 ## - Term 93707 - 93738 -1.0 96 51 Tu 1 . - CDS 93969 - 94547 172 ## gi|293189509|ref|ZP_06608229.1| benzoate membrane transport protein 97 52 Op 1 . + CDS 95219 - 95512 292 ## gi|293189511|ref|ZP_06608231.1| putative CRISPR-associated protein Cas1 98 52 Op 2 . + CDS 95509 - 95790 187 ## Rru_A1153 CRISPR-associated Cas2 family protein 99 53 Op 1 . - CDS 95795 - 98002 1092 ## Psta_1142 protein of unknown function DUF324 100 53 Op 2 . - CDS 97995 - 98588 323 ## gi|293189514|ref|ZP_06608234.1| hypothetical protein HMPREF0970_00549 101 53 Op 3 . - CDS 98585 - 101398 793 ## gi|293189515|ref|ZP_06608235.1| CRISPR-associated RAMP protein 102 53 Op 4 . - CDS 101395 - 103485 1101 ## sll7066 hypothetical protein 103 53 Op 5 . - CDS 103482 - 105455 1216 ## sll7067 hypothetical protein 104 53 Op 6 . - CDS 105469 - 106134 323 ## gi|293189518|ref|ZP_06608238.1| conserved hypothetical protein 105 53 Op 7 . - CDS 106155 - 106853 209 ## gi|293189519|ref|ZP_06608239.1| hypothetical protein HMPREF0970_00554 - Prom 107088 - 107147 2.3 106 54 Tu 1 . + CDS 107418 - 109853 3799 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 109959 - 110006 18.3 - Term 109947 - 109993 18.1 107 55 Tu 1 . - CDS 110064 - 111461 458 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 108 56 Tu 1 . + CDS 111679 - 111933 329 ## gi|154509442|ref|ZP_02045084.1| hypothetical protein ACTODO_01973 - Term 111879 - 111921 2.5 109 57 Tu 1 . - CDS 111960 - 114563 1721 ## COG1643 HrpA-like helicases 110 58 Op 1 17/0.000 + CDS 114702 - 115754 1469 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 111 58 Op 2 13/0.000 + CDS 115751 - 116200 717 ## COG0319 Predicted metal-dependent hydrolase 112 58 Op 3 1/0.286 + CDS 116197 - 117552 1593 ## COG1253 Hemolysins and related proteins containing CBS domains 113 58 Op 4 . + CDS 117554 - 118792 1563 ## COG1159 GTPase 114 58 Op 5 . + CDS 118794 - 121259 1944 ## COG0178 Excinuclease ATPase subunit + Term 121444 - 121480 -0.9 - Term 121293 - 121343 16.2 115 59 Op 1 13/0.000 - CDS 121355 - 122029 903 ## COG1556 Uncharacterized conserved protein 116 59 Op 2 17/0.000 - CDS 122031 - 123635 2185 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 117 59 Op 3 . - CDS 123637 - 124434 1042 ## COG0247 Fe-S oxidoreductase - Prom 124537 - 124596 3.1 - Term 124546 - 124579 -0.7 118 60 Op 1 . - CDS 124748 - 125308 541 ## gi|293189533|ref|ZP_06608253.1| lipoprotein 119 60 Op 2 . - CDS 125329 - 125898 507 ## gi|293189534|ref|ZP_06608254.1| hypothetical protein HMPREF0970_00569 120 60 Op 3 . - CDS 125978 - 126523 504 ## gi|293189535|ref|ZP_06608255.1| conserved hypothetical protein 121 60 Op 4 . - CDS 126527 - 126886 314 ## gi|293189536|ref|ZP_06608256.1| conserved hypothetical protein 122 60 Op 5 . - CDS 126883 - 128091 530 ## Srot_0732 hypothetical protein 123 60 Op 6 . - CDS 128097 - 128381 274 ## gi|293189538|ref|ZP_06608258.1| conserved hypothetical protein - Prom 128402 - 128461 2.9 - Term 128406 - 128458 22.6 124 61 Tu 1 . - CDS 128477 - 130168 2401 ## COG1620 L-lactate permease - Prom 130194 - 130253 1.8 + Prom 130061 - 130120 1.6 125 62 Tu 1 . + CDS 130320 - 132074 2391 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases + Term 132090 - 132153 18.2 - Term 132080 - 132138 18.0 126 63 Op 1 . - CDS 132145 - 132729 855 ## COG1309 Transcriptional regulator 127 63 Op 2 . - CDS 132974 - 133513 776 ## PFREUD_13230 transcriptional regulator + Prom 133494 - 133553 2.1 128 64 Op 1 4/0.000 + CDS 133756 - 134493 551 ## COG1381 Recombinational DNA repair protein (RecF pathway) 129 64 Op 2 . + CDS 134490 - 135314 994 ## COG0020 Undecaprenyl pyrophosphate synthase 130 65 Tu 1 . - CDS 135311 - 135853 701 ## COG0586 Uncharacterized membrane-associated protein - Term 135873 - 135909 -0.3 131 66 Op 1 5/0.000 - CDS 135967 - 136356 485 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 132 66 Op 2 42/0.000 - CDS 136370 - 137299 1221 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 133 66 Op 3 25/0.000 - CDS 137313 - 138137 274 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 134 66 Op 4 . - CDS 138134 - 139150 1632 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 135 66 Op 5 . - CDS 139225 - 140241 772 ## COG1609 Transcriptional regulators - Prom 140281 - 140340 3.6 + Prom 140283 - 140342 3.1 136 67 Op 1 19/0.000 + CDS 140406 - 141632 2153 ## COG2182 Maltose-binding periplasmic proteins/domains + Prom 141757 - 141816 2.1 137 67 Op 2 20/0.000 + CDS 141848 - 143440 2407 ## COG1175 ABC-type sugar transport systems, permease components 138 67 Op 3 . + CDS 143440 - 144336 1353 ## COG3833 ABC-type maltose transport systems, permease component + Term 144362 - 144419 22.2 139 68 Tu 1 . + CDS 144470 - 144712 63 ## + Term 144877 - 144913 0.0 140 69 Tu 1 . - CDS 144748 - 145350 252 ## + Prom 145147 - 145206 3.3 141 70 Op 1 8/0.000 + CDS 145387 - 145776 556 ## COG1725 Predicted transcriptional regulators 142 70 Op 2 . + CDS 145773 - 146669 1122 ## COG1131 ABC-type multidrug transport system, ATPase component 143 70 Op 3 . + CDS 146666 - 147388 724 ## gi|293189557|ref|ZP_06608277.1| conserved hypothetical protein + Term 147426 - 147484 18.9 144 71 Op 1 . + CDS 147609 - 148997 2367 ## COG0423 Glycyl-tRNA synthetase (class II) 145 71 Op 2 . + CDS 149038 - 150315 1411 ## COG0042 tRNA-dihydrouridine synthase 146 71 Op 3 . + CDS 150327 - 151151 758 ## COG0710 3-dehydroquinate dehydratase + Prom 151208 - 151267 2.0 147 72 Op 1 . + CDS 151361 - 151864 432 ## gi|293189561|ref|ZP_06608281.1| putative DNA replication and repair protein RecF 148 72 Op 2 . + CDS 151824 - 153410 1254 ## gi|293189562|ref|ZP_06608282.1| PGRS subfamily gly rich protein 149 72 Op 3 . + CDS 153404 - 154612 618 ## COG1404 Subtilisin-like serine proteases + Term 154818 - 154851 0.1 - Term 154697 - 154742 11.1 150 73 Tu 1 . - CDS 154759 - 156804 3039 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 156824 - 156883 2.3 + Prom 156858 - 156917 1.9 151 74 Op 1 4/0.000 + CDS 157110 - 158279 1191 ## COG4671 Predicted glycosyl transferase 152 74 Op 2 25/0.000 + CDS 158276 - 159484 1424 ## COG0438 Glycosyltransferase 153 74 Op 3 . + CDS 159484 - 159703 296 ## COG0438 Glycosyltransferase Predicted protein(s) >gi|292821499|gb|ACYT02000015.1| GENE 1 163 - 1014 1214 283 aa, chain + ## HITS:1 COG:MK0724 KEGG:ns NR:ns ## COG: MK0724 COG0451 # Protein_GI_number: 20094161 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Methanopyrus kandleri AV19 # 5 276 2 286 309 73 26.0 4e-13 MVKTVLVTGAGGYIGRHIVHALLERGLDVSVVDFRLDGVDERARRIDTQIFSGDADIYDQ LGRPDVVLHLAWRDGFVHNSPAHIEDLPAHYHFIENLLEGGCTHLAVMGSMHEVGYWEGA IDENSPCNPASLYGISKNALRQITSLLTTKHGATMQWLRGYYIVGDDAHGSSIFSKLLAA AQEGKKTFPFTTGKNLYDFISIQGLAYQIAAAVSQDEVTGIINICSGEPMSLADRVESYI RENDLDITLEYGAFPDRPYDSPGVWGDATKIRQILATVDGTGE >gi|292821499|gb|ACYT02000015.1| GENE 2 1019 - 2881 2651 620 aa, chain + ## HITS:1 COG:mlr7559 KEGG:ns NR:ns ## COG: mlr7559 COG3754 # Protein_GI_number: 13476280 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis protein # Organism: Mesorhizobium loti # 1 608 1 633 644 451 39.0 1e-126 MKRAGIFLFFDPQGLVDDYIVECLTSLREYLDEILVVSNSPLDDTARERLLKGATDVFER ENTGFDVGGYRDGIARFGWDRLGQIDELVLFNYTFFAPVNPWKNLFDRVEAAGAVDFWGI TEHDEVRPHPFLAATRMPRHIQSHWIAVRNPLLSSPDFRKYWDEMPPIRSYNDSIQWHES RFTEYFGNLGYTHVVAYPREEYPSRNPVFDNASMLLADGCPILKRRNLFHDPLYLDRHAI IGADMLELADRAGYDTDLILTNLARTSRPRDLVTNAGLTTVISPRADQATLDAAASLKVL AVAHIFYADMADEILDRLSVLPAGYHLVATTSNEENKALIEAHAQERGVDADVRVVSSNR GRDIGAFLVDCNDVLTSGEYDIVVKIHSKKSVQDDYNAAQLFKEHLYDNLLASSDHVASI LAKFAAHPGLGMVIAPMPHMGYPTMGHAWFANRAPARDFAKKVGITVPFDDHQPLAPYGS MFIARPEALSLLTGAGLVPEDFPEEGGYKDGSLAHVIERLLSYAVLSRGYYVRPVMTPKW AGVYYGYLEYKLAATSSMMPAFAIDQVPFLKARMGTVPNLLGAVKTNIMVHTPGLGNALK PAYRAARSAVHKIRSMKGER >gi|292821499|gb|ACYT02000015.1| GENE 3 2878 - 4149 1893 423 aa, chain + ## HITS:1 COG:mll7336 KEGG:ns NR:ns ## COG: mll7336 COG1835 # Protein_GI_number: 13476108 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Mesorhizobium loti # 23 370 2 332 357 91 28.0 3e-18 MSLASTIRAAAPHTPQSVAQAFNSRSNSIGFLRWLMAFMVIFSHAGPIAGFYGGEDLGVQ ISKEQSIGGVAVAGFFFFSGFLITRSRMGRATIWRYMWRRVLRIFPAFWAALLFTVGILA PIAYWHTYHNISGYLHPATESPLTYFVNNMWLNLGQRNIAGMGENLPYFILHGARDWNGS AWTLIYEFKAYILVAILGLFGALANRKVGGAFALVLIALNALQWMGAGQVANVNYLLRDP YMLMFMGPFAFGMLFTLYGDKIPMDSRLAWGGLIFGLLSYASGGWNIVGQYGFLYFLMYL AIRLPLQNWEKHGDLSYGIYIYAWPIMAFAAYFHLQDRGWIAYHLTVVVTVHILAYLSWH LIEKPAMSLKNYLPGWMDKLIEHFRPTYEAVARRIVTPALSSTRIATVMEAEEAAARSEE ETK >gi|292821499|gb|ACYT02000015.1| GENE 4 4146 - 5447 1699 433 aa, chain + ## HITS:1 COG:no KEGG:Namu_4197 NR:ns ## KEGG: Namu_4197 # Name: not_defined # Def: hypothetical protein # Organism: N.multipartita # Pathway: not_defined # 130 429 106 391 516 132 34.0 2e-29 MSEKKAAGQFKESESGLRDVSFDEGVPAGSWKRRLHYVPLAVLLAGACAATGVGTWYKAT HPAPQVPAPAAQASSFARTTPQSLPEVCAPTPRADVGPWTPGVAGTAGYLPTDAAQASFE QSMTGVTTYVQGRDGYLFLSDVFNANFSQALGRVRPTPEQVSAWDRYMSGIETAASEQGA TALFMPAPATWDIYSDKLPQWTDPLMGTTPLDLMRSALPTRAWVDVREGLREAREGSEAP LYSAVNPHWSPYAAHVAWNQTLSCLAAVNPQLEGLPSLTPSGVSSVDAPNEYEALGAPAQ SGPWAVPTYEQDPGSVHLLQLETRDDLADTAARLAEVTGAPEVSLASPVDFQNKPALTYN PNGRGTALIVRDSQGNNLGPEVAATFEYTIQVGHGLDTEQPTDVAALIEAYKPSVVIVEF TLRYLVLTPAAGK >gi|292821499|gb|ACYT02000015.1| GENE 5 5476 - 6330 1447 284 aa, chain + ## HITS:1 COG:CAC2329 KEGG:ns NR:ns ## COG: CAC2329 COG1682 # Protein_GI_number: 15895596 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Clostridium acetobutylicum # 4 284 4 258 258 94 24.0 2e-19 MGVAVSETKRVIDLTVRMAQRSISSEFKGTALGRLWSFINPIATIAVYALIFGVVFRGEA DKGVNSGLSSFALWIGVGVIAWNFLSSGIQRGMDSLVGNSGLLTKVYFPRQVLIYSSVLA LAYDFAFELGVIILIMCIAGGPGVLLMIPAVIVITLLAMLFVIGMGLILSVASVYFRDIS HLWQIFNQIWMYASGVVFSLSMLNKVQTDLAAKGWTWGGEPLPIVTIFRLNPAELFLEAY RSTLYGFAMPSWQVWLGCAAWAFGIFGLGSLIFRRFSARIVEEL >gi|292821499|gb|ACYT02000015.1| GENE 6 6330 - 7622 1875 430 aa, chain + ## HITS:1 COG:CAC2328 KEGG:ns NR:ns ## COG: CAC2328 COG1134 # Protein_GI_number: 15895595 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Clostridium acetobutylicum # 5 309 4 336 419 263 39.0 6e-70 MTNAISVEGVSKRFRIYKNRNQSLKGAFLQRSRAQFEEFWALDDVSFEIPQGKTFGLLGH NGSGKSTLLKCIAKILTPDRGTISSTGRMAAMLEVGSGFHPELSGRENIYLNGAILGMSK KEIDSKLDAIIDFSGVERFIDQPVKNYSSGMYVRLGFSVSIHVEPDILLVDEVLAVGDME FQNKCMDKFAQLKDQGRTVVVVSHGLEQMRTFCDQAAWLDHGTLVDVGAAAEVIDTYSDV AHHAVEVEGGGTRFGSGEAMIERIELLSASGQPTSLVYPGDPVRLRLHYRANERIESPVF GASIDTREGVFVWGLHGMDACYVPTSIEPGTGHLDIDIPRLTFNPGAYTISAAIQNQDMT SVIDALQKARRFDVLPGPGMESGGLVNLGASFTDLTPARPMRDVPRRGAADYEHLARMQA QQADALENED >gi|292821499|gb|ACYT02000015.1| GENE 7 7773 - 9314 1857 513 aa, chain + ## HITS:1 COG:SP2190 KEGG:ns NR:ns ## COG: SP2190 COG5263 # Protein_GI_number: 15901997 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 32 266 431 673 693 140 30.0 7e-33 MASTLTLARRVLARVLTVALTLALIALPAQARADAGDEATPQSAADTSTAAQSALLAAPS ASPSPETTDVPEPTAPASSDGDRAARASSESDDPPTMGAQDETGRGTWMRDSVGWWWRRA DGTYPASQWVRIGGARYFFYDSGYMATGWLRDGADWFFLAPSGALVGGWLRDGGQWYYLD PNSGVMRTGMTGVDGTWYYLDSSGAMRTGWERLADGWHFFASSGAQMGGWLRDGGQWYYL DPDTGVMRTAPLELNGRRYEFDASGAWRGYEAPAGYLQPTDHITGLGDATNTLTWGMNGT KVRIARVRLGLWHSNKLASVDAPFVAAVKNFQQRAGLPVTGVVDKATWDAMDTGYPWTVD QYQATPLPLTATRSERVEAMIGYAWNQTGSSYTWGGAGPYDQGFDCSGLVLQSLYAAGLD PQPIDVIKHAWPSYRTSQELYAYPRFQHVPLAQRQRGDLIFYTTSGTVTHVAIYLGDDMV VHTDWMGRPARMQHITAGYGWERMTPDVVRPLP >gi|292821499|gb|ACYT02000015.1| GENE 8 9383 - 10426 1424 347 aa, chain - ## HITS:1 COG:alr3070 KEGG:ns NR:ns ## COG: alr3070 COG0463 # Protein_GI_number: 17230562 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 5 219 4 207 318 93 31.0 5e-19 MSATVTVVVRTRNRPAMLTRALASIASQTFNDYEVVIVNDAGDEAEVRSIVKKQKSAVRS KITIVTNEVSKGREAALESGLSASHNRYYAVHDDDDSWHPHFLEKTVAYLDEHPEAGGVA SRCEIVRERVRADGTCIEIEREVLSTDNYGLSLVDMMVENYTPPISQLIRREVADRVGHW DGSLQTQADWDFNLRLLADSPVGFIDGEPLAYWHHRDTMDASLGNSVVTDAYLHKWDNLH IRDRYLRAMLATEDPSSPHLGQALLSAEYYRRMREELARVDSGFHSSLNLVHVDMLNTMT ALHQQVHELRGEVSALREHLDAGSPLRQSLRRTASLPKRIVHRLLGR >gi|292821499|gb|ACYT02000015.1| GENE 9 10423 - 11976 1885 517 aa, chain - ## HITS:1 COG:no KEGG:Arch_0077 NR:ns ## KEGG: Arch_0077 # Name: not_defined # Def: protein of unknown function DUF2142, membrane # Organism: A.haemolyticum # Pathway: not_defined # 15 498 8 488 508 313 38.0 2e-83 MARALIDHLAPARDRFVSTAARPLAFLILALGILSVATGWIFASPPGSSPDDDYHLVSTW CPRPIESTGCDTTTIDGELYVMAPVTTSHAQCEAFSPDKSHACIHDYSDDTMFPSYRYND GQYPYGFYQFHHLFAGHNVEHSVWIMRSINVGIAMVLIGAVCALSTHEVRRATALAALVA WTPMGLYFIASNNPSSWAITGVFTYGAALYGALNAQGWRRWTLLGMAALASLLCYGSRGD AAFYVFVASLGILILAACRRHLPEIGIASVLSVIGIWCMLGSGQSGHIAQSEASVTLRER IEVAIMNIRYLPEYFAGFIGLNSGPGWRDTPLPGYTTILGLLVLGAVLFYGARTMSLRKI LAAFVVFGAMAGIPLLIATPPTFPNLGGYHSRYALPLLGTWLLIWLSCAIKKSSITRGQI VMFVFFLSVVDAVAMHTTIARYVRGLLSIRHMGWIAPGNLNGDIQWWWADMQLSPMALWG LASLGYALALASAIYLLRNRQVEAPASTTPTKEEETA >gi|292821499|gb|ACYT02000015.1| GENE 10 12061 - 12654 689 197 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10943 NR:ns ## KEGG: HMPREF0573_10943 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 8 197 11 205 206 79 27.0 1e-13 MTRLVPSLALLTLCALATTSCSVLEDTQSVQSTPAASVSPGDLGQPSSSAMPTLRAASPG CAAMDEIFSEALNGSETGQAYRSLAAKRSGETTADERHRAWEAFAAAFKNDYSDRLTQAA TDETSKQALAALAVYVERNAALDSGAIPEFTDQQGAEEALKRGENPEVNPAYTQALAEAT SAHGTLTTCMPHWPVVF >gi|292821499|gb|ACYT02000015.1| GENE 11 12862 - 13869 1569 335 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 3 331 5 339 346 478 68.0 1e-135 MKIVVTGGAGFIGANFVHTLLEDHPDVDVVVLDKFTYAGNRASLTDVPAELAARLTVVEG DIADADLVDGVVAGADAVVHFAAESHNDNSLLDPSPFIQTNLVGTFTLLEAVRRHKVRFH HISTDEVYGDLELDDPAKFTPTTPYNPSSPYSSSKAGSDLLVRAWVRSFGVEATISNCSN NYGPYQHIEKFIPRMITNRLRGVRPRLYGDGLNVRDWIHVRDHNTAVWDILMKGRIGETY LIGADGETNNRDVVAILNELMGYAPDDFDHVTDRPGHDLRYAIDNSKLVTELGWEPQFTN FRDGLADTIAWYTENEAWWAPLKEAVEAKYAAEGH >gi|292821499|gb|ACYT02000015.1| GENE 12 13874 - 14848 780 324 aa, chain + ## HITS:1 COG:mlr7566 KEGG:ns NR:ns ## COG: mlr7566 COG0463 # Protein_GI_number: 13476286 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mesorhizobium loti # 14 253 7 239 310 92 29.0 1e-18 MDRVTRDEAVLCPRVTVLMATYNGMAEGGAWIDEQVDSVLAQVGVDVHLVVSDDASSDGT RAHLEARAAADPRITVLPQRDGTPGVTGNFLHLFTTHAPDGSYVAFTDQDDVWHEDKLSS QLALMADRGADVVSSNVTSFQWLPGGAVGERRLIRKSQPQRAWDFLFEAAGPGSTYVFSP KGHEALVQVLEGLDYSEIGVHDWYVYALARSIGLTWVIGEEPTLEYRQHGGNVQGANSGS GARDARMAKLRNGFYRNQFILTARTAQKVGTFDERRARQLRAILGELEGQGIASRLRFAL RWRQIRRDRMEGLKLAAARVLGVW >gi|292821499|gb|ACYT02000015.1| GENE 13 14853 - 15566 680 237 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189423|ref|ZP_06608143.1| ## NR: gi|293189423|ref|ZP_06608143.1| hypothetical protein HMPREF0970_00457 [Actinomyces odontolyticus F0309] # 33 237 1 205 205 373 99.0 1e-102 MSRLTHCITAINGWSGPALTQYGQERVELGGPVVSRWLAKIANYLTNELAADLFGTGEAT PTRIYIYTTLQPWQDALWQIAARAMGWEVLDTRRPLPGDLFVTNILGSEASDALDAGAHV LAQPAQYLSFAWDGPLDGALDGLAEIAMQPDALVVDTPPLLVQARDEALAGTRPSAPAQG RRVALLWDARTGAGQVLDQWMQGRSVLIIDPNAISPDRLTQILATEDADGGLVTYQR >gi|292821499|gb|ACYT02000015.1| GENE 14 15595 - 15792 174 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFHIAGAPYNESINTKITRVSLSEVKPFRDIETFPVALDPTVKQCHISRTSQLLSIWVTR DLRYT >gi|292821499|gb|ACYT02000015.1| GENE 15 15782 - 16078 448 98 aa, chain + ## HITS:1 COG:no KEGG:MAB_3606c NR:ns ## KEGG: MAB_3606c # Name: not_defined # Def: WhiB family transcriptional regulator # Organism: M.abscessus # Pathway: not_defined # 30 95 50 115 118 120 83.0 2e-26 MWNIFGDGPLEWSEDADATQYARIDGPLAWQQHALCAQTDPEAFFPEKGGSTRDAKAVCQ ACQVREECLEYALANDERFGIWGGMSERERRRLRRMAG >gi|292821499|gb|ACYT02000015.1| GENE 16 16171 - 19239 2465 1022 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11079 NR:ns ## KEGG: HMPREF0573_11079 # Name: not_defined # Def: glycosyltransferase # Organism: M.curtisii # Pathway: not_defined # 1 993 30 1077 1110 276 29.0 2e-72 MAPHSLTIIDVAGRHVTPFPADRVPDGAELVRVGRARNLGDAIRRAHAQGARFTSEQWWW ILHEDSAPEPECLDELIQAAAVGKIVGAVGVKQMSWDDSRLLELGIFATASARRLERIGD DDIDQGQHDGTSDVLGVGTAGLFISAEAYEAVGGFDPALGPFGDGLDLGRRLHLAGYRVI VAPKARVRHARVSLYSGLDGASDTDHSEPTGDVSDAVVDGNDATDGSFRKRRYAQMYNWC KAVPALILPFLALWLLVWSPARALGRILTGRASLALPEIGALLSLIGATPRLLAGRARAA QSRRVPRSTLRALETAPALLRKEPAGVDEDEHGERIDPLIIASMRRYRFRSASTAVGLLI LTAALALMQWWGTGAGLVGGAWVSLPSSWSELWAAAWSAWIPGGDGYAGGADPLTILMAI LSAPFAPAGITPGALATFLLVTSTPLAAMMAWIPSRVLASSLRVRFLVSLAWSVAPSLLM SATHGVLAATLAHAALPVFAAYCLGQPKPLLVAGAGGVDEAPLRPRGINGGCAVLALVVL CCCAPWTLPLGAGVLAWRSRRSLLVALPAIVLLVPTYVSIAVHPSAWPAFASTSGGVHAY TRADSWMAMLGMPAAPSTPLEAIALGTIGAGIIAAAGIALLRLRTRCAALAFCLALVAAA AGWAASQIGVGISGAFVAHAWTGPALSLSVGALLVLAARSGSGNEDEAEASRPAWDGSRP FTVRALGALSALVLLGAGGGVAVSAFAARGDAADTPTFTLAQRSTVSPMSSPIVSAVASQ AQRSTRVGRILVLDGDPTNGTVNASLWRGSGPSLTDGSPATRALALARARSGAAEGVLRD PATASLAQAAYTLVVYPDDTTVATLAAHDIDTILVPLGASGSQALTSGLDRASGLEKVGD TNSGTVWRVRPGGVTPSRARVESGSGVTTPVGGSQLSVSGDVDASGTLILAERADSGWRA SVDGTALVATEVADGWSQAFEMPTAGHLTLTYSAWWIIPWRIASGVCLVVAAASALSAWR KR >gi|292821499|gb|ACYT02000015.1| GENE 17 19272 - 20780 1056 502 aa, chain + ## HITS:1 COG:no KEGG:TWT125 NR:ns ## KEGG: TWT125 # Name: not_defined # Def: hypothetical protein # Organism: T.whipplei # Pathway: not_defined # 71 320 89 341 459 74 31.0 1e-11 MGAGIAAAVVASASMWVSSAPAVVEGTAQSAHPSQVQLACPSGIVDPFETTNVAAGITWS SLATAPVSPAPASVTGQGGVIPTALTLAGQGGGELAGLSAVGCAAARTSQWIATGATTAG ADMVLILSNPGPTASVVSIDGYGASGPLNAAPRQVTVPARSSASVLLAGWFPDESALAVH VTADGGGVAAWTQASLMNGEIPQGTTLASAVVPATTQTILGVDPKGTSLLRLASPSGEAH VSVSVADSTGVHPLAGGEAAVAEGTTLDMPLDGASSDSSLITLIVTSDREVVAQTTTITL GAPWAQRASAWIMRSNATPATALTEATIPGATQIEGMGRQVLSTTPIRATSLATNSGVTN VRASLLLYAPADAPASSNDQGVATSDAPSPSATPDIWASPSPSGGQSGTSQSGADQDPQS SGTSASTPGAVMVRVGGRTIYVAPGIPTLVDLPDNGGTLSADSPIQAAIVVSADTAVGRM TTTWNVGTEGISAVSGTIRTTN >gi|292821499|gb|ACYT02000015.1| GENE 18 20789 - 21094 273 101 aa, chain - ## HITS:1 COG:no KEGG:Bcav_1214 NR:ns ## KEGG: Bcav_1214 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 2 97 15 112 118 82 48.0 4e-15 MVGELVTELIRRWPQVATIEFAVEDVPPSNPAPWESHNVVVARIFPADRRRGLHDRIVVY RLPITLRCAPEEVAVMTRRVLIERISHILALPPDEIDDAMR >gi|292821499|gb|ACYT02000015.1| GENE 19 21281 - 21739 433 152 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1215 NR:ns ## KEGG: Bcav_1215 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 5 114 5 127 134 96 55.0 3e-19 MIAQRHCSKPGCSAVAVATLTYDYRDSTVVVGPLATVADPNSYDLCDEHAHNLTAPLGWQ VVRLATTFEPAPPSGDDLAALVDAVRRVAQEAQAAPAPPQETRKPTTGPFGPARSVGTPD TSSPLDPSSPYARRRAQFTVVDGTDTEDTTRG >gi|292821499|gb|ACYT02000015.1| GENE 20 21736 - 22566 541 276 aa, chain - ## HITS:1 COG:Rv3695 KEGG:ns NR:ns ## COG: Rv3695 COG1714 # Protein_GI_number: 15610831 # Func_class: S Function unknown # Function: Predicted membrane protein/domain # Organism: Mycobacterium tuberculosis H37Rv # 16 244 4 233 310 111 36.0 1e-24 MSTQRSQSSAIQDDFVRTGEAVTLDVTPASPPERFAAAVMDATTYLMCTVVLLVMAVRFT LPSPSIQRVIIIGFLSTTMFFLPLVVEIATRGRSFGKWAFNLRVVRDDGGAITARHSAVR VSTGILENWATFGGLAALAELMSSKGKRLGDLAAGTMVCSQGTSVFYPPLVLPPGLEDWA RTATILPLDDALVAEARAFLQSNRSLKTDVRGQVAVSLAQRLSRRVQTPLPDGLHPEVVI AAVLVARRDREWGREAERRSRGQTRFHEATQARFGL >gi|292821499|gb|ACYT02000015.1| GENE 21 22585 - 23577 1293 330 aa, chain + ## HITS:1 COG:Rv3694c KEGG:ns NR:ns ## COG: Rv3694c COG1300 # Protein_GI_number: 15610830 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Mycobacterium tuberculosis H37Rv # 1 318 1 320 330 159 33.0 7e-39 MDIDVLRVSGETEWKRLEQLTRQRSLSGDEIDEFDRLYRSTTTDLARVRTLNPDPEVIAE LSRILSAARGRLAGTGGLSGAVIARFFTVSLPLTLYRIRWVILAVMAAFIAIAGVQAHYL MSHPDVMNELGTPEQLKYYAQSAFVEYYHQDTNAEFGLSVWANNAWIALVGVATGITGVY PLKILWENATSIGTSTAVVFSYGGVWHFFRFILPHGLPELTAVFISIAAGLRVFWSLLVP GPMTRFQAVGQAARSAMTVAAGCAILLAGSGVLEGFVTPSDLPDAVKITLGALMTAAVWV YILILGRRAHQAGASADVGTDAGYYQPVSG >gi|292821499|gb|ACYT02000015.1| GENE 22 23620 - 24951 1067 443 aa, chain - ## HITS:1 COG:MT3795 KEGG:ns NR:ns ## COG: MT3795 COG1721 # Protein_GI_number: 15843311 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Mycobacterium tuberculosis CDC1551 # 1 443 36 475 475 253 42.0 4e-67 MAISARSALLVLVGLIPLAFAPSRALAWAWCGLVVAVCLLDAFAAPSPRTLRLSRDVTGP IRADQTTESRLQLTNTTKRHMNLDVRDAWPPSLNPSPVRQRVQLRPGTSERVSTVLAPTR RGTREADVITIRSWGPLHLGARQVSLSAPLALSVLPEFKARVLLPSRLARLHELEGTTPT TLRGAGTEFDSLRSYVVGDDPRDIDWRASARSTELMVRQWRPERDRHVVIVVDCGRASSA LLGAPEHEEVDSIALGRAPRLDSSIETALLLAALADRAGDKVHLIVLDSAVRARVSGVRG AKVIETLAHTFTDISPRLDVTDWSEMVSTVEQTVHHSAFVVIATKIPPAGMETEFTDALA RLSDRHTVLVASATDPDEIRARAGREDAEQVFLAASASLAERSDEAGATDARLAGALTVR ASAGLLPARTADRYIELKKSGRL >gi|292821499|gb|ACYT02000015.1| GENE 23 24959 - 26110 1413 383 aa, chain - ## HITS:1 COG:MT3794 KEGG:ns NR:ns ## COG: MT3794 COG0714 # Protein_GI_number: 15843310 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Mycobacterium tuberculosis CDC1551 # 13 383 1 358 358 346 58.0 5e-95 MTSPIPGPAPEGMPQPGPIPAAPPNGYAPQGAPAPYAPQVQVAPQDTRASFSAPTGEGWS GRALDETEKRTQEALLALKAEIGKAVVGQDAAISGLIVALVAGGHALLEGVPGVAKTLLV RTLSRALDVDMARIQFTPDLMPADITGSMVWDAGQSEFIFREGPVFTNLLLADEINRTPP KTQSALLESMEEHTVSIDGETRQLPDPFMVIATQNPVEYEGTYPLPEAQLDRFLLKLELP LPSREAEIDIIARHQAGFSPMALAEAGIRPVASAADIQAAHAVASRIEVSPAVMAYLVDL CRATRTSPAVRLGVSPRGATALLRTSRVWAFLQGRGFVTPDDVKTMAPVTLAHRLGLRAE ANLEGVTATDVVAGVLAATPVPR >gi|292821499|gb|ACYT02000015.1| GENE 24 26103 - 27254 993 383 aa, chain - ## HITS:1 COG:no KEGG:SCAB_55241 NR:ns ## KEGG: SCAB_55241 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 4 381 7 394 396 135 31.0 2e-30 MKARQVAVVTPTARERFAAARPMIIIVVFSLLLAIAASILPKAGYNNAPVGIRNKEGDGA RALAQVLGDHGISVRDVNAQQAASVDENTTLVVVFPSRMTDEMAKAIETRTNVVYVGLEE DQGSYSVYLQGLRSSRTYSSKTWLTPGCTSDIAGRTQHLQASDYVLSGSADGWNLCFSDD GRNYAYAERSDSGRFRALIPDSLRLRNRAISEGGNAALAINTIGRTPKVAWYSPTRTDTP TGTSTQELLTSPYLMPAFLMVIAACLLAGLARGRRLGPLTSERLPIEVPASETLIGKARL MRSQRAYEHAAQALRSSTASRIATALGVAHTADREALTHAMEQRGLPASRCSALLWGPPP TSEKALIHLANDLDALEKEIRHD >gi|292821499|gb|ACYT02000015.1| GENE 25 27251 - 27883 624 210 aa, chain - ## HITS:1 COG:no KEGG:Gbro_4819 NR:ns ## KEGG: Gbro_4819 # Name: not_defined # Def: hypothetical protein # Organism: G.bronchialis # Pathway: not_defined # 9 192 9 200 227 67 29.0 3e-10 MIGLLSCDAPLTPDEGEAHEWIVEELSHGEYANVPNPIARWVASLIDWFWEALSWKGQGA PPVSLIFMIVGIIAVAAILIALILNPIRLAKRVSRTVFEEEASETEAQASFDEAVAAQDW DLAYVWAYRLMVLGLDAQDVVTSTPGLTAREAAQAATRVAPMFGPQLDQFAQAFDQVRYG RSGVSSDQVEALRRFTPDLLRACRDAEVAS >gi|292821499|gb|ACYT02000015.1| GENE 26 27880 - 29175 1491 431 aa, chain - ## HITS:1 COG:no KEGG:Ndas_3746 NR:ns ## KEGG: Ndas_3746 # Name: not_defined # Def: glycerophosphoryl diester phosphodiesterase, membrane domain protein # Organism: N.dassonvillei # Pathway: not_defined # 7 425 87 495 514 144 31.0 9e-33 MSSPWTSPDPSAPYQGWTPQPESGAPTPQQGYGAQPGYGAQQGYTAPQPTQGYGAQQGYT APQPTQGYGAQQGYAAPQAPAYGAQPAYGAQPGYNAQPGASGYSTTNRWGWQSKPGIIPL RPLTIGDLFSGAFEAIRSNPKVLFGFTVVIMLLVSLIASVSILLSGLGYESVANTDYDPQ ALHQSMTDRTNVLLLRMISNMVQWIATFAGTTILTGLLASTVSQMTVGRNLTLSEAWAMT RKRLGSLLGSFALTAVITGVPIILWIVAVFASLAALMGGNDDLWWLVLVAFAAIIPIFIL VYFFQIKLLFAPICAVLEEIGPVASLKRSWSLVKGEFWPTLGRFLLLNLAVSFIGGFIGF VIGLIGGLVSVAATSDPSSPVGSAIAIFFVMLGSSLLLPFSASFETLMYTDLRIRKENFA SVLAQAGAQQQ >gi|292821499|gb|ACYT02000015.1| GENE 27 29318 - 30001 734 227 aa, chain + ## HITS:1 COG:Cgl0731 KEGG:ns NR:ns ## COG: Cgl0731 COG0745 # Protein_GI_number: 19551981 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Corynebacterium glutamicum # 1 224 1 223 226 280 64.0 2e-75 MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD GFDVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGR EDSQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQV WGYRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYRAGAGA >gi|292821499|gb|ACYT02000015.1| GENE 28 29982 - 31601 1424 539 aa, chain + ## HITS:1 COG:Rv3245c KEGG:ns NR:ns ## COG: Rv3245c COG0642 # Protein_GI_number: 15610381 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis H37Rv # 28 535 27 530 567 271 35.0 3e-72 MPAQGRRDALKDLLRAVASSRPWSLLASSHLASRIRHSLSARIALAITVAALVILLVFGV IIASQLRTSMFETRKDAILADASLRFSSAQSVFSSSTASSPAQVQESARGALASLKASAA GAGATNVALLRSEGATASLRINQIEDEQMRALITPQMRTAVSGGGAQWQSVGIRSSDSDK VVPGILVGTQVQLPRAGTHELYILYSLSADQAQVDVVLRVLVLSALPIIVALPIGVFALL HRLLLPVRVTAQAATKASKGDLDVRVDVHGDDEMADLGHAFNAMTSSLQETISRYDELAK LQQRFVSDVSHELRTPLTTIRMAEDIVWDNRDELPAHARRSAELLHDQTERMEQMLADLL EISRYDAASALLDAEDRDLRPIALRVVEGCAELAQRQNVSVEIVAQGRVAAEIDERRIER VIRNLVVNAIEHADGTPVTITLAATETDVACRVRDRGVGMTQEVADHVFDRFYRADTARA RTTGGTGLGLAIATEDVAIHGGRLQAYGEPGRGASFLMTLPKRAGEEIVSRPLALWEDE >gi|292821499|gb|ACYT02000015.1| GENE 29 31613 - 33244 1270 543 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10408 NR:ns ## KEGG: HMPREF0573_10408 # Name: not_defined # Def: lipoprotein LpqB # Organism: M.curtisii # Pathway: not_defined # 1 543 13 558 558 194 31.0 8e-48 MLLAVAACLALAGCTSLPTSSAPAPFDVSARDGSGIQFSAEGPSDGADAATLVSDFLLAC AAGPQDDYATARLFLSATSARSWQPEMEILIYDTDAAPAVTAGSENGSEVDVTVSVLGVA SIDASGVLTRVAASTVTRTFSLVREDGQWRINSPENMVLMSRASFTASFSLANLYFPTTE GGDLVADPRWYPSRRLASHLLAGLVEGPRQSLEPVTANAIPAGTTVPSQGLDVVDGVARV ELNAVVPATEGARANLAWELTRTLTQVADVSQVSVSLSGDVLDAQGIPVPPTYSLDTLVG AGPDGVGIVSSSGLTSLTSTTDASNPTVSPVDPSLVAWSGTDGVYAHRGGTSVAFLPGQA PLGPSVDRFGWVWGPATASSVSVGGGVDGAFSVSVESESAGEIHAVRISPDGTRALVLRG SDASAWVGVVERDASGHPLAIRSLEQIPLEHGSVVDASWTTSTGFVLVVRTTGEDDQLVT LPLGGLPSNVSLPIRVTSMSAGGSSSVVVISGTDADGKAQVLIRSGALWQNAPESLTSAR YAG >gi|292821499|gb|ACYT02000015.1| GENE 30 33280 - 33996 231 238 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10407 NR:ns ## KEGG: HMPREF0573_10407 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 8 229 18 236 259 98 35.0 2e-19 MRGLVGALLPVQCAGCRAWDEVLCPSCRSLAGCPAHVASLEGVRGPLPLVAIGDYDGPLR RIVLAAKHSARTDVTDFLDEAGACLGTALGGVLGVAGSPAAGVGSLEGRSSFTGGAVEVW VVPAPSSWKRRLRGRQVALPLARAVARALAAGARPGVRVRVVDAVRLRVGATSQSGKAGA QRTVGRMGSMRALAVPGHGVRVVAVDDVVTTGATVREMERVLGGLDAVVTLCRTGLIS >gi|292821499|gb|ACYT02000015.1| GENE 31 34171 - 34815 556 214 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227384070|ref|ZP_03867487.1| SSU ribosomal protein S30P [Jonesia denitrificans DSM 20603] # 1 212 1 212 219 218 52 1e-55 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQRVDVELTHERNPRQADTAERIELTV YGKGPIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAEILEAPVV EETATFETEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDEALDQMMMVG HPFFLFVDKDTNQPCVVYHRHGWTYGVLRLNTTI >gi|292821499|gb|ACYT02000015.1| GENE 32 34998 - 37844 3736 948 aa, chain + ## HITS:1 COG:ML0779 KEGG:ns NR:ns ## COG: ML0779 COG0653 # Protein_GI_number: 15827340 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Mycobacterium leprae # 3 891 1 871 940 973 59.0 0 MSIIDKILRAGEGRMLRKLDRLASQVDALQEDFEALTDEELQAKTQEFKDRLEDGETLDD ILVEAFATVREASWRILRMRPFHVQVMGGIALHQGKIAEMKTGEGKTLVATMPSYLRALT GKGVHVVTVNDYLAKYQSDIMSRVYNFLGLTCGCILVGQTPAERREMYACDITYGTNNEF GFDYLRDNMAQVPEDLVQRGHAFVIVDEVDSILIDEARTPLIISGPADGDLNRWYVEFAR IARLLKRDEDYEVDEKKKTVGILEPGIDKVEDQLGVENLYEAANTPLIGFLNNAIRAKEL FFKDRDYIVDGGEVLIVDEHTGRVLPGRRYNDGMHQAIEAKEGVEIKAENQTLATITLQN YFRLYPEGSRSGMTGTAETEAAEFHSTYKIDVIPIPTNKPMIRKDQSDLVYPTEKGKLNA IIEDVVARHEAGQPVLIGTASVEKSELLSQMLRKKHIPHQVLNAKQHAREAAIVAMAGRK GAVTVATNMAGRGTDIMLGGNSEFLAQANLAAEGLDPKENPEEYREAWPKALAAAEEAVE AEREEVRELGGLYVLGSERHESRRIDNQLRGRSGRQGDPGESRFYLSMEDDLMRLFNSGM AQRIMASGAYPEDMPLENRMVSRSIASAQRQVEARNFEIRKNVLKYDDVMTGQRETIYAE RRKVLEGEDMGPQMRAFMESLVTGLVDEAIADKPVDEWDLPSLWEHLRAYYPPSVTIEEV EEEHGGAASLVRDDLVTELVGDIHAVYADTEDRLNANPLAQAQLGDEPIRTLERRVVISV VDRLWREHLYEMDYLKEGIGLRAMGQRDPLVEYKDEGAQMFQAMVERIREESVQQVFSYA KQFERALAAAEEEAGGSIAAASVAPAQEDASSSSSEPSVEDVAAAESAASAAARVAVAHA RSVMGNVGRAKAPSRVSYSSAEGTESAASSSSGNRAERRAAAKKRRRR >gi|292821499|gb|ACYT02000015.1| GENE 33 37927 - 38418 182 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189442|ref|ZP_06608162.1| ## NR: gi|293189442|ref|ZP_06608162.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 94 163 1 70 70 126 100.0 4e-28 MSTQIAPRPRASEAPRRRTSTRPTPTRPIQPTPFRWSQDPQLVYRAATSPTPTHYVTLPR QNLPDPGPWAANLARAIVEVVTGVRQAPQLRRWMLPDLYGALACVHLSPCARGTRPVHVR TCPLDERTTEAAVIVSTVSRTYALALRLEEYHGRWITTALELA >gi|292821499|gb|ACYT02000015.1| GENE 34 38415 - 39137 664 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189443|ref|ZP_06608163.1| ## NR: gi|293189443|ref|ZP_06608163.1| mannose-binding lectin [Actinomyces odontolyticus F0309] # 1 240 1 240 240 317 100.0 4e-85 MTDDSLTVAGQSHLTDAFLWLVGAPLCLLDALYLSRLAPPLSAERPETLILWVLGIAALA LLAWSLLCSACAHLALLRVAPPAARTAARFFVSRCGTRLSRSLLARAGASALIGSTLVTG APAAASLAAPQEQTSPTVSLTWADTPGAPSPDQEATQTAPATLPVPAQDAPDADTPDHPT SITVAPGDSLWSIAASLRPDADDAHIDATWRAIHAANAESVHDPALIYPGQTLAIPQDLP >gi|292821499|gb|ACYT02000015.1| GENE 35 39267 - 39830 304 187 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509494|ref|ZP_02045136.1| ## NR: gi|154509494|ref|ZP_02045136.1| hypothetical protein ACTODO_02026 [Actinomyces odontolyticus ATCC 17982] # 1 187 1 187 187 288 97.0 1e-76 MDMSAFIAELEAQFDDERGRDLDALIDELTDAERASVSLSARLAGADGDITLALRGGLTI TGAVLDSTRSWVLLRGGRDDSLIMLSAIVAAWPLGRSVARESSVRGGVGVGHVLRELGAR GVGVVIESDGGDHRGIIDAVYADHVDVALDGEAFAYDDRDEVGGMTVSLALAGLRRLRVL GQRWSDD >gi|292821499|gb|ACYT02000015.1| GENE 36 39827 - 40039 371 70 aa, chain - ## HITS:1 COG:no KEGG:Xcel_2501 NR:ns ## KEGG: Xcel_2501 # Name: not_defined # Def: prophage CP4-57 regulatory # Organism: X.cellulosilytica # Pathway: not_defined # 1 63 1 63 69 74 63.0 1e-12 MATRFLTLADVAETLNLTMSATRALVSSGELPAIQVGGKHVWRIEESVLEQFIQDQYAAT RERQKAENAH >gi|292821499|gb|ACYT02000015.1| GENE 37 40038 - 40133 62 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALRYQLGLLRLIGLSQQFFMRHLTDRIGWF >gi|292821499|gb|ACYT02000015.1| GENE 38 40164 - 40820 555 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189446|ref|ZP_06608166.1| ## NR: gi|293189446|ref|ZP_06608166.1| SAF domain protein [Actinomyces odontolyticus F0309] # 25 218 1 194 194 322 100.0 9e-87 MSVHHRRVKRVSASVSIPTRAPGKMDRRFVIGLVLIIASLIAFSALSGLLRGGSRVYTAT TTIAPGETLTADNVREVVLSVDSDVYVPTSEAPMGSVVTRQITPGQIVMRTDLSQGDSGT VQTDMLRVAVTVSAGLPDGVADGTRIRLWTIPARTQGQAGNQAREIEGTFTFVRRIEASS QSHRGQRIEILANAQSMPVLLAAQSSTDELAAVPVGAP >gi|292821499|gb|ACYT02000015.1| GENE 39 40817 - 42004 674 395 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10400 NR:ns ## KEGG: HMPREF0573_10400 # Name: not_defined # Def: ATPase family protein involved in chromosome partitioning # Organism: M.curtisii # Pathway: not_defined # 6 357 5 371 441 142 29.0 2e-32 MSSVHGVVVLADQRYEAPLIQAIQARSDVLAIVRRCADLAEVVAAARAGLADLAVIDGSD PDLTIETVESLRACGMVVVALAPHHERSRLIALGVASVAAPGSPDQVVNSLIAATRTRRS TPATASSAPPPPPPPSAPGSVLAVWGTSGAPGRTTLAVGIATALSAHGPTLLVDADTANP TIAHLLGLPVHASGLSTLARTASRGPITPADTLGAAVMRSENLHVITGLVTPHRWREVSK PGIESIVGALRLSARYSVVDIASTSLEKASRGASRDDAALGVLERADRLVIVARGDIVGI NRLSFLARWWEAQERAIPVEVIVNRVSTADIGPHPVPSLQAAIGAFMPDCIFHVVPEDEG VGRASLRGKALGENGARCDASDALQAIVEQWVPTL >gi|292821499|gb|ACYT02000015.1| GENE 40 42007 - 42477 717 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509490|ref|ZP_02045132.1| ## NR: gi|154509490|ref|ZP_02045132.1| hypothetical protein ACTODO_02022 [Actinomyces odontolyticus ATCC 17982] # 1 156 1 156 156 249 100.0 4e-65 MRVYVPAVLSDLCVPLPPVRSGVLCVPEAGMSGEDIEVLEDDAITEAALSSLELARETEG AGVARVVLAVDTPTSTTLTPGEQIEPHIFAAPAFEYTWSDVAAILADLPDASPAVQAVLS ADTQESADEAVAALWESSLAWFDRSERPAVLALHQG >gi|292821499|gb|ACYT02000015.1| GENE 41 42481 - 45555 2751 1024 aa, chain - ## HITS:1 COG:lin1686 KEGG:ns NR:ns ## COG: lin1686 COG0419 # Protein_GI_number: 16800754 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Listeria innocua # 6 1024 6 1021 1023 191 23.0 5e-48 MKIRWLRIVGIGPFAGEHTVDFSAFEDSGLFLLDGPTGAGKSTLIDAITFALYGDVARTK DASKDRLRSNHISDSDPSEADLVFEVGTGIYRVTRTPAYTPAGKKSQRNSKSTLMRVVED PDAPDGWRTVEPIASGPRDVGSEIPAIVGLDKDQFLQTIVLPQGKFSQFLNATSDAREQI LRDIFDTQIYVDFTKALVDAATSSKRGIEERRVAAIGAFERVRSLDAAFAENGTEDGSAA DGRAADAKEADQLDAGAEDSSAVTRWAEDACERAREAHAQTLHVAEVATATAREASRALS EGRALAEAQAEHARLSATLTELTSSEGAIASDRERAGQARRALAVAPLDAAEASARARLE AAGDQVAALSPALGDEDSIDSTSLTPEAVATLGKRAQDLRGEATRTRGSLEEALAVERSL PEVRTHIDSLRSQHEQALARIASIEAERETLPLRIEQASEALRLMRADADTLPEAASALR ALNERLDASMQADLLRSALLGASDELREATVAAKLANAAAADGHDLWIAQSASALARELE EDIPCPVCGSTAHPNPAPAADGEITREQVAELDQARDHAEAALRDAQAGHQDLVRRIAQL NEVAGAPTPTLETERDRAAELVAKLKALSPQITEIEAALAQERARLDGLTDSLASARETA ASLASTLQERTSALAAAEARVETERADYTSLDARATALDERAHRAAALAVACADWDNARA ALAQAQRSLANALEEQGLEADSWRTLLLPLPQVEALEARVAAHEKALFAAREALASERLT RAASAPAPDLEALTETARKAEEDAAMAARASGILEQHCAQLDAAHASLEQALEALGRARE QAGPIRRLADIAAASGPENLASTPLSAWVLIARLEEVLAAANPRLAAISSGRYELVSVPD DGTASRKSGLGLAIVDHDTDALRSPRTLSGGETFYTSLALALGLADVVSAEAGGVELRTM FIDEGFGSLDSHTLSLVMAQLQALRCAGRTVGVISHVEEMATQIADQIQVRPLPEGGSTL SVRA >gi|292821499|gb|ACYT02000015.1| GENE 42 45552 - 46757 1274 401 aa, chain - ## HITS:1 COG:VCA0520 KEGG:ns NR:ns ## COG: VCA0520 COG0420 # Protein_GI_number: 15601280 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Vibrio cholerae # 1 398 1 377 379 159 30.0 1e-38 MLILHTSDWHLGRTLHGASLGDSADAFIEWLVALVRERGVDAVLISGDVFDRAVPPVDAL ARMRRALRELTEITTLILTSGNHDGAARLGLFADMLTPSLHVVTDPEAIGTPVEAGGALV YPMPYLEPDLVRQSLSDLPARGEADLPTPLPRSHQAVLGAALRRVRADLSARRDAGDERP AIAMPHAFVTGAQASDSERDIQVGGVPSVSADLFDTLGDEEPLTHGLDYVAAGHLHRPQD ISGASVPIRYAGSPIAYSFSEAGATKSITLLTTDATSVTDIEVVPIPTLRGIAVLEGTMD ELLADPDEATTASYVSITVTDDARPERMVPRIREVYPHALVVVHRPSQAPALAPAMTVRA SRDPREVTEEFYEAVGGRALSAQERELALDVWAQLRGKDMQ >gi|292821499|gb|ACYT02000015.1| GENE 43 46859 - 47587 1085 242 aa, chain + ## HITS:1 COG:Cgl1505 KEGG:ns NR:ns ## COG: Cgl1505 COG0518 # Protein_GI_number: 19552755 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Corynebacterium glutamicum # 6 237 5 232 252 115 32.0 1e-25 MTKPFLMLTSRDDGPVLAAECADLPRFSGLTPDQVRQVRMERELPDLDLSEYSGAFVCGS PWDANADDHLKEARQVRAEAWLRSFYDRALGESFPILGLCYGLGTLTLHLGGVIDTHHGE EISGIALTKTDAGREDPLLEGTPDRFHSYVGHHEAVRELAPGMQVLLAGDDTPIQMVRVG EAAWATQFHPEMDLEGVNVRIDQYAGRYYPADKAEAIRAQVATVDTDPSRLVLQNFVRRF QR >gi|292821499|gb|ACYT02000015.1| GENE 44 47759 - 48022 135 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNALDLTSPQQAPMNNTSIGHVAAKMLLTAACILLVGTVSYSIVTGRTPMNWCFYSGMIL LLIHRIPMMIERARHRREEQQHASEIP >gi|292821499|gb|ACYT02000015.1| GENE 45 48030 - 48413 338 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189453|ref|ZP_06608173.1| ## NR: gi|293189453|ref|ZP_06608173.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 127 1 127 127 224 100.0 2e-57 MKTAIRALVSFACAALLSAGMVLPTQAAGRSTIAPTGEAAVEQMESTEGTQVVGEIIGIL ALGYAIAYNDGVSRAKSGEVTWSMWNGSFGHVLQAAASVSPAVWLGYLGWSQGFKGECRQ HSYCYNR >gi|292821499|gb|ACYT02000015.1| GENE 46 48562 - 49647 1199 361 aa, chain - ## HITS:1 COG:ML0791 KEGG:ns NR:ns ## COG: ML0791 COG1162 # Protein_GI_number: 15827343 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Mycobacterium leprae # 5 310 4 304 327 258 50.0 1e-68 MARRDTGTDDPRVRVRAGKGSRPRTKDRPDWSSKPLGRVIGIDRGRYQVSLEADGTRVVA VRARELGRGSIIMGDRVRLTGDLSGRPDTLARIVAVEERSSVLRRSLEDAPDQRGEKAIV ANADTMCIVVALADPPPRTGMIDRCLVAAFEAGLDPVLVLTKADLASADELIAAYEDFDL RVVLTSAEAGEADPGVAELRALLAGHWSVLVGHSGVGKSTLINLLVPGAGRATGHVNEVT GRGRHTSTSSEAFELDEGGWIVDTPGVRSFGLGHVSVADVLGVFPDVAEAAAWCLPLCSH GEEEPSCALDAYARATGPFTLDEAGDGDADRVRSERASRVASVRRLLEAVATAEAASKAT R >gi|292821499|gb|ACYT02000015.1| GENE 47 49647 - 50999 1405 450 aa, chain - ## HITS:1 COG:Cgl0740 KEGG:ns NR:ns ## COG: Cgl0740 COG0128 # Protein_GI_number: 19551990 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Corynebacterium glutamicum # 5 430 14 429 430 338 48.0 2e-92 MSAPWPSPLPTSPVDATVEVPGSKSITARALYLAAVADSPSVIRGALDARDTRLFAAALE VMGAHVEDEGAGILRVTPMSLPPRGGRIECGLAGTVMRFLPPLAALSPEETLFDGDEQAY ARPLGPLLDALVRMGATVTYHGERGHLPFTIQGPIHTPLGAQAWVDSSSSSQFLSALLLV SPLVGDPLFVSAPGVIPSMPHVEMTLASLAGAGIDLEVVDEGRANLSTWHIFPSRPIGGD ITVEPDLSNAGPFLAAAMVTGGRVRIPAWPEATTQAGDAWRALLGHMGATITLDEEGLTL TGPGAGNYPGIKATMAEVGELTPTLAAICAYASTPSHLSGIAHLRGHETDRLAALVTEIN RAGGQAEETEDGLIITPRPLHAAQIRSYADHRMAAFGAILGLITPGITVDDIACTSKTLP TFEAMWASLVSENGEESTQAAPASSIEEEE >gi|292821499|gb|ACYT02000015.1| GENE 48 50996 - 51523 643 175 aa, chain - ## HITS:1 COG:no KEGG:Arch_0328 NR:ns ## KEGG: Arch_0328 # Name: not_defined # Def: DoxX family protein # Organism: A.haemolyticum # Pathway: not_defined # 1 144 1 143 170 79 43.0 4e-14 MNLLRVVARPLLAAPFIADGVDALMHPHFHVERAAGVRPLIDKATHAVGLDPLTDQQLAV ATRVTGAVMVVAGLRFALGRKPRVAALTLAAIGAPMALVNAPLPGTTRGLPKEQIKRRRY RTLNKAGLAAGVLLASTDRVGQPSALVAHAMRRDQRRAIAAAEAAVVERLSGTAS >gi|292821499|gb|ACYT02000015.1| GENE 49 51446 - 51619 57 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHEGINPVGDERGGEQRTGNNAQQIHTPIVRHLCPWGKPNGLPTPKQRDKSGATHTC >gi|292821499|gb|ACYT02000015.1| GENE 50 51722 - 52354 749 210 aa, chain + ## HITS:1 COG:Cgl0743 KEGG:ns NR:ns ## COG: Cgl0743 COG1595 # Protein_GI_number: 19551993 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Corynebacterium glutamicum # 19 207 6 194 206 221 60.0 6e-58 MDTTTPSPTPQAPELTPASSALDGAELEARFMDEAMPLMNQLFGAALGMTRNRADAEDLV QETYLKAYQKFHQYQPGTNIKAWLYRILTNTYITSYRKAQRSPKRASSDTVEDWQLADAA SHSEVGLKSAEVEALEALPSAQLRDALDSLSEEHRMVVLMADVEGMSYKEIAEELGVPMG TVMSRLNRARKNLRSVLADVAAEYGIGATK >gi|292821499|gb|ACYT02000015.1| GENE 51 52363 - 52650 337 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189458|ref|ZP_06608178.1| ## NR: gi|293189458|ref|ZP_06608178.1| putative anti-sigma factor RshA [Actinomyces odontolyticus F0309] # 1 95 5 99 99 162 98.0 4e-39 MTCQDVLDALYELIDCEECDRRSGLIDAGSVPGPDARARALMIKHVATCAHCTDALDAER HVRALLRGCYESEQASDALRARVVASITSVSVTWR >gi|292821499|gb|ACYT02000015.1| GENE 52 52792 - 53142 74 116 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQGRKWSSAHTRHGTPHSSFAPSTRHATKRRTPQTRRRPGPAPARPCVTCASHGRIWSSP AARTQRAYKTRPDQPVRARNVFGSGVRTLAVVRAVLTTIATLTTPLRHVILLGFVV >gi|292821499|gb|ACYT02000015.1| GENE 53 53381 - 54013 74 210 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189460|ref|ZP_06608180.1| ## NR: gi|293189460|ref|ZP_06608180.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 210 154 363 363 413 99.0 1e-114 MEAFTLGCMALHQWSNFSMFEQMESRERAEEIRVELLKRLERSPTKRGLRRACAILRAID PGCENPAEAALLWLVRSISPFPSLTQVHIEVRGRHYYADIVIADLRIIIEFDGIGKLGDN QSDLARAKREWIRRDQDLRDAGWNVIRVSWPDYNDWEGLRLRLMRALGRTSSSLDHRLLW SPPTERCDGRNRRFRIGRAPQRVHVLDRKQ >gi|292821499|gb|ACYT02000015.1| GENE 54 53978 - 54148 96 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQCHASEGESLQRLLLLNATDECIVRVFRFQSVSASAFLREWRDAGTGDTCFGYCR >gi|292821499|gb|ACYT02000015.1| GENE 55 55128 - 56012 1075 294 aa, chain + ## HITS:1 COG:mlr1247 KEGG:ns NR:ns ## COG: mlr1247 COG0657 # Protein_GI_number: 13471310 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 54 287 62 293 317 125 34.0 8e-29 MSLQMRLIHARKGLTPPALHTEEAARDMAAGAPLQHPMPERMRARFTATCDKGVTRVFPK QGLRSGGALIFLHGGAYLFPLVDGQWGIVEGLIDRTGLPVIIPDYPLAPEHTAAEAFDFV QPIIDEVQAEFGRVVIFGDSAGGGLALSLAMQRRDAGKRQVDGLVLYAPWVDVTMTNPAI EDVQHRDKILRAPGLEWAGRAWAGDLDPADWRVSPLYGDPAGLPPMRIFQGDADILGPDT IEFARKAARAGVDVRLRVEPDGFHVYVLSVPVIPEAEAALDHSARFISGILTQP >gi|292821499|gb|ACYT02000015.1| GENE 56 56105 - 56773 516 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189462|ref|ZP_06608182.1| ## NR: gi|293189462|ref|ZP_06608182.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 222 1 222 222 431 100.0 1e-119 MSKRKNTSTTPQSPTSSLTKEQKRYGTAFWIVLTLILYGLAHLADTISPHGPSRFRWLTF SYGTAFLIMLACIAAITYLFQWFDKRERAGTVMGLHKRATALVIPVLILIPSAYNALGYG TRVVFDLFTGPQTVTVSSCTREIVSRREPHGRYRTMSVADYHFIMTLADGTTRQTVIDSR VFLDDRRVDEVLYSACIKNPGTTSMTLDVYYYSWIIDQARLD >gi|292821499|gb|ACYT02000015.1| GENE 57 56809 - 56955 101 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPIAVPVIIPICAAIILSGIIGCAIYYSIGFAIRDSHRPRRHRKERD >gi|292821499|gb|ACYT02000015.1| GENE 58 56879 - 57058 153 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509475|ref|ZP_02045117.1| ## NR: gi|154509475|ref|ZP_02045117.1| hypothetical protein ACTODO_02007 [Actinomyces odontolyticus ATCC 17982] # 5 59 1 55 55 75 92.0 1e-12 MAHPMIPLRMIAAQMGMMTGTAMGDMRANWMIIQHTIAVRLPAATAMAVREIWGSSTEG >gi|292821499|gb|ACYT02000015.1| GENE 59 57389 - 58162 575 257 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189465|ref|ZP_06608185.1| ## NR: gi|293189465|ref|ZP_06608185.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 257 1 257 257 489 100.0 1e-137 MSNQYPLPPSSDGPTQYGAPNYGTTQYGGYGTDPASLSYQRVSPTTVANHQQRRQSLKFV IISLATILLGCAVYFLRDLFEYGTPLLMLRLAESAAGLVLALSCFPFASILRRQAQPAYP SSSTPQRPRDMSGPLYFGMVGLLIAGVSLYFGLPAAMDLADGPQPKTVTSCMYFQYDAPR SMFSHSSVYRDNFSINFEGGLTHTTTFISESIDDIETRGDLATELYNACEHRERTQTMTV SYYPRTWILTGVQVSGS >gi|292821499|gb|ACYT02000015.1| GENE 60 58304 - 58903 265 199 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189466|ref|ZP_06608186.1| ## NR: gi|293189466|ref|ZP_06608186.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 199 1 199 199 360 100.0 2e-98 MFAGLASVIAVLFFTSIGIAQANDFGTATLQWQFAACLFGLAAAGLCIPFIPATVRYTRI LFTEGENESAETRASGYTLICLVGLAAAVISISNAVPAARDLIEGPHATTVSSCWLYQRP VKSSPTNTSPSSYRNEFNITLNDKSTLVLVIETEKRDELQSASGISGTLYKGCELRPSSK KLVLDLYPRTQIIADARLV >gi|292821499|gb|ACYT02000015.1| GENE 61 58854 - 58994 105 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVKNSTAITLARPANTWVGIGRVKAFVDLSSGVELSCGSVPVDVA >gi|292821499|gb|ACYT02000015.1| GENE 62 59318 - 59920 648 200 aa, chain - ## HITS:1 COG:alr1529 KEGG:ns NR:ns ## COG: alr1529 COG2755 # Protein_GI_number: 17229021 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Nostoc sp. PCC 7120 # 1 192 9 204 206 78 30.0 9e-15 MRICFIGDELVAGVGDPRGLGWVGRVNAHSTFDLPATFLTLAVPSETTKQMAARWEAEVL PRLAEGEPHGLVIGVGPGDVAAGISTARSRLNLANITDRATALGIPSFVVGPPPLAGVDS GSLKALSSSCSEVCARRGIPFVDCYTPLVAHDQWFEDMAASLARGADGQTLPSQAGYALM AWIVQHQGWYEWTGATPADV >gi|292821499|gb|ACYT02000015.1| GENE 63 59972 - 63886 5027 1304 aa, chain - ## HITS:1 COG:Rv1248c_3 KEGG:ns NR:ns ## COG: Rv1248c_3 COG0567 # Protein_GI_number: 15608388 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Mycobacterium tuberculosis H37Rv # 403 1302 1 893 894 849 47.0 0 MAARDFAHARGATLTEEYVPTPTASQPDPQWYIAKMRDLYERDPQLLDPSWRAYFSTESA PPQLRAKRPDIPEGAPSTPEPAPASSVKAAVPVDPVAPVSVTPPTLDIEDDAPEAAATEH AHVVSVTRSDLPPAPPAAVAEATSPYTRQQHGRAAFTLFQDAPSHDELHILKSAARATAK HMEASLSIPTATSQRQIPAKLLIENRALINAHLARTVGGKVSFTHLIGYALVEALCEMPD LNVRYTIEGGKPAVEQLAHIGFGLAIDVADAQGNHSLKVPVIHDADTLTFAEFVDAYQDL VARARTATLTTTDFQGASVTLTNPGTLGTTTSVPRLMVGQGLIIGVGATDYPAEFRGVSP KRLAALGIGKTMFFSSTYDHRIIQGAASGRLLALVDAKLSGRDGFYERVFTSMHVPARPY AWEADYDYDPNHEKGKPARIAELIHAYRSRGHLAADTDPLAYRVRRHPDLDLSSYGLSVW DLDRPFPTGGFGDSDQMLLRDILTRLHDTYTRTVGIEYMHIQDPEQRAWVQKRIERPYEA PSPDAQRHILGTLIRAEAFEEFLQTKFMGQKRFSLEGGESLIPLLDHILADSARTGIHEV AIGMAHRGRLNVLANIAGKSYAQIFDEFEGNYMPNSVQGSGDVKYHLGTWGVYSLDDGLA TKVYMAANPSHLEAADGVLEGIVRAKQEHLGDPDLPIIPILIHGDAAFIGQGVVQETFNL SQLEGYKTGGTIHIIVNNQIGFTTGPTQGRSTGYATDLAKGLQVPILHVNADDPEAVIRC AHLAFEYRNAFHKDVIIDMVCYRRRGHNEGDDPSMTQPVMYSLIDRIPSTRAVYIRGLVG RGQLTEDEARQSIAQYEAELGRILEETRAGGASSVSEINPGSRTHDPALTAGVGEAGESP DEEWTMPESQMPGIGMMIGWTSAAPAKQLRRIGRAHTRFPEGFEPHPKLRQLCERRLEMA LGNKPIDWGFAELLAFGTLLMEGTGVRLSGEDVGRATFVQRHAILHDANDGREFTPLRFL TENQARFDVWNSPLSEYGVLAFDYGYSLESPETLTIWEAQFGDFANGAQTVIDEFVCSAE QKWGQRSSLVMLLPHGYEGQGPDHSSARIERYLQLAAQENMWIVQPSTPANYFHMLRTQA YKRPRKPLIAFTPKQLLRLSAASSHLDEFTSGAFQPVIGDSSITNPSLVTRVLLCSGRLY YDLIKEREHRGDTSTAIIRLEQLYPLPEAEVTETLAQYPNASVSWVQDEPRNQGAWPHLA LNLFPSLGRPVRVVSRPESATTAAGRASLHKEQAATLVAQAFEG >gi|292821499|gb|ACYT02000015.1| GENE 64 64055 - 64156 79 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDCDTAGSMAALSHPLSARVPATRPGLVEGATR >gi|292821499|gb|ACYT02000015.1| GENE 65 64153 - 65481 1779 442 aa, chain + ## HITS:1 COG:Rv1842c KEGG:ns NR:ns ## COG: Rv1842c COG1253 # Protein_GI_number: 15608979 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Mycobacterium tuberculosis H37Rv # 3 424 6 435 455 275 41.0 9e-74 MTTVLMLLLGVVLTAGTFIFVSAEFSLVAVDQAVLDKKAEEGDRGAASVLRATRTLSTQL SGAQVGITLTTILLGYTTQSVLADLLEDLLGSVGLAWGLATGIAAFVAAAFVNVFSMLFG ELVPKNLALAHPLATAVRVVPFQMAFTAIARPVIWVLGGTANWVLARMGIEPQEEISSAR SASELAALVEHSVEEGTFDMSTADLFVNTIRMSTLSAADVMTDRGRLHTLSEGDSAQDVL DLARETGHSRFPVIGDDSDDILGLVSLRRAVAVPADRRAEVPVISSSLMTDAPSVPETAP IGPLMVQLRDEGLQMAVVVDEYGGVSGIVTLEDVVEEIVGEVSDEHDQRRLGIRPRPDGT FLVPGTLRPDELARRTDINLPEDGPYDTIGGLVMNELGEIPVVGSRVNVDGIGIEVTQMQ GRRVAQVAITPAPEAENEEVSL >gi|292821499|gb|ACYT02000015.1| GENE 66 65478 - 66512 1183 344 aa, chain + ## HITS:1 COG:Cgl1413 KEGG:ns NR:ns ## COG: Cgl1413 COG1253 # Protein_GI_number: 19552663 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 1 344 1 351 354 239 40.0 4e-63 MSVGVGLAITVALLAVNAFFVAGEFAVTSTRRSQVEPLADEGARGAAAALYALQHVSLML AICQLGVTVASTTLGVVAEPAIAHLVESPLGRLGAPEATSHVVGFAAALVIVLFCHVVFG EMVPKNISIAAPVRMLLILAPVLVRLGHVLRPIIEAMDRFANWFVRLAGYEPRSEISASY TIEEVASIVVASQEEGVLTDELGLLSGTLEFSEETAGTAMVPLDKLIVLPEGATPADVEE QVAHTGYSRFPIAGEDGSIVGYVHLKDVLYATGEDREQPITPWRIRRLEAVSADDQVEDA LRHMQRTGAHCALVRDAGAIVGILFLEDILELLVGEVRDVLQRS >gi|292821499|gb|ACYT02000015.1| GENE 67 66557 - 67540 955 327 aa, chain + ## HITS:1 COG:TP0706 KEGG:ns NR:ns ## COG: TP0706 COG0739 # Protein_GI_number: 15639693 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Treponema pallidum # 125 314 137 305 308 90 35.0 5e-18 MTNTDKGESVSDTECPLPKRSQLRAARPHDADDQPENPTTSVIPMTDEASAPTPDPATDR EDAEENSASSTGERRRNVHPVGYVLRALLVLGLAGTTIAVPMTGRVGSDSSLTVPARAFG ASVGGPSWALSSALPQATALDATLTANSRAKAKAPVSITGCASGNGADGNRNVHVVADTI YWPLPQGTYTVTSPFTMRISPVSGQLLAHEGIDMAAPLDTPITSVYAGVVEEVAENSRSG AYVQIKHTRSDGTVFHSAYLHQYMNKITVKVGDTVTAGQVIGAVGNNGWSTGPHLHFEIH DSSDTPVDPDAWMQTNKAVYLGQESCS >gi|292821499|gb|ACYT02000015.1| GENE 68 67537 - 68364 1029 275 aa, chain + ## HITS:1 COG:Rv0317c KEGG:ns NR:ns ## COG: Rv0317c COG0584 # Protein_GI_number: 15607458 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Mycobacterium tuberculosis H37Rv # 9 261 8 253 256 125 36.0 9e-29 MMPVTMRQGPIVFAHRGGSEEAPENTMSAFAYAYEAGIRHVETDAHVTADGKVVICHDET VDRCFDGSGAIAQMTWRELSKLRHRDSGEQMPLLAQVLEAFPDMYFNIDAKEPGVEGPLL DVIADHGAADRVLVASFSEPRLRAVRGIAASDPARAVATSLGTEAVVRLVGAAKSATNPA WWHVPGPRQGAIAAQVPMHQGPIRVVDERFVATAHTLGLAVHVWTINTVADVLRLLEVGV DGIITDRPVFLRDFLDQRGLWTQPPAPGSVSGPRD >gi|292821499|gb|ACYT02000015.1| GENE 69 68497 - 69261 342 254 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189473|ref|ZP_06608193.1| ## NR: gi|293189473|ref|ZP_06608193.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces odontolyticus F0309] # 1 254 1 254 254 489 100.0 1e-137 MSEHPIESNSSDQIIVTVEQADALLEMIASDENAGRISSAALSSGLVSLGLAGANGLAGD AARILEPVRAARTQIAIRVVSPSMRGVVRDWRIWPTMPRSVVMRSGVDGVHFSQVDYCEV PHILAFASLLHAGPTIHDGPPYIPADFIAAVRSLDAQGAQDVLNDLVTYGPAESHFAQDC VSGRWSVVTCVREEMHRREWKTGLHYECFVTDHLHAQIHAPLDEEALAHLSADPTLDAPP RAAIWAMLMGMLAP >gi|292821499|gb|ACYT02000015.1| GENE 70 69258 - 69731 199 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189474|ref|ZP_06608194.1| ## NR: gi|293189474|ref|ZP_06608194.1| hypothetical cytosolic protein [Actinomyces odontolyticus F0309] # 1 157 1 157 157 291 100.0 1e-77 MTLSSGWRFLTPEEYAQLGPLAEDPSVRLVAVAKTKDEGKVPTFVVTGGALSTDASDDEV YADTIRQVEEVLPGFHLIDDFRWPVLPEEARWRTGAYILDDVSLTLSQLTWITRTAPATQ QSPQRFLWTATCTCPSILFPMIIDDFITMAQTLEVTP >gi|292821499|gb|ACYT02000015.1| GENE 71 69746 - 70168 503 140 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189475|ref|ZP_06608195.1| ## NR: gi|293189475|ref|ZP_06608195.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 140 1 140 140 266 100.0 4e-70 MKDNVLGCLCALILGVLGVGIWYAEMFTDSKAANLWRRMNGQGRISKNWAAIGSPAISSI CFIYLFSVLIEKHVPDWLIFGLACLMMLLLLVMIIGLLPIKFPRWVYADWQYAKRHGLLD ADGNIDQEAYENHADRKEFW >gi|292821499|gb|ACYT02000015.1| GENE 72 70179 - 71270 662 363 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189476|ref|ZP_06608196.1| ## NR: gi|293189476|ref|ZP_06608196.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 363 1 363 363 659 100.0 0 MPFPINVDNLFTFKDQCAHSSGALSTADGDTMRASSIVGQQEALCVDSCQYDLQVASDVC EGISNDLTALANAVSELAWSMKSVRDEYKGIAQAAKGCGLVVVGDKVILFDESDDDLVHS FNELQAQAEVQRLNYERAEHVFSLALDNLKVDVYEQWIEPVFDALKEQFILDDKHPLAKA FPYAVGLLDMGGQITIGSSMTYFKRLYEPPKGFFAKGDLSKWAFRPGRHGLEPMATRSVS PIATKIGKVAGPIGAVVDGGITAYDTYQTDTEQHPEWSEGHKIARAGVKGTVTGGATWAG AWLGAKGGAAIGAAVSGPFAPVGAVVGGVVGGVIGGVIGHYVGESAGDWLNDKGVDRVAA SME >gi|292821499|gb|ACYT02000015.1| GENE 73 71770 - 73188 1977 472 aa, chain - ## HITS:1 COG:NMA0753 KEGG:ns NR:ns ## COG: NMA0753 COG1055 # Protein_GI_number: 15793728 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Neisseria meningitidis Z2491 # 6 430 30 467 473 254 40.0 2e-67 MTYPWWSLLPFVAMLACIALLPIIPKTSHWWEKESSQLSVALALGVPTTIWMFVKAGTGP LIATGVEYVQFIALLFALFVVSGGIHLAGDIKATPRNNTIFLAIGGLLASFIGTTGAAML LIRPLLETNKERKHRVHTVLFTIFIVANCGGILTPLGDPPLFLGYLHGVPFAWTFALWKE WLFVLALLLLSYYSIDRVRYASEDTSSIEADDREIKPLRLHGTINLLFFAIIILAVAFAP SWDGEALAEGHVHSWTGFVPWREIIMFTVAGLSYKLSDKKVRFEENAFTWAPIMEVATLF IGIFSTMAPALRYLEQIAPSLPLTRMTYFVFTGGLSSILDNAPTYMTFFEMAKASGGDGT LVAGVPEYYLIPISLGAVFCGAITYIGNGPNFMVKSVAESDGVPMPSFGRYIGYAFTLLV PVLAAMAMIFVGETWLVRGLGIALATGLAFLSLVRIRRAGLDEAVADFSGNE >gi|292821499|gb|ACYT02000015.1| GENE 74 73247 - 73480 66 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWSVPGGGSGLIDEAGARSLTGFRWVGRGHCERCGYEWHPEQDSNLRPLAPEASALSAEL SGQLGQFSRVSYDHAGR >gi|292821499|gb|ACYT02000015.1| GENE 75 73534 - 73989 591 151 aa, chain + ## HITS:1 COG:Cgl2369 KEGG:ns NR:ns ## COG: Cgl2369 COG0698 # Protein_GI_number: 19553619 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Corynebacterium glutamicum # 1 148 1 148 157 197 66.0 6e-51 MRVHIGTDHAGFELKEKVVAHLREAGHDVVDHGAHTYDALDDYPPFCIEAAQAVVDEPGS LGIVIGGSGNGEQMAANCVEGVRAALVWSDATARLAREHNDANVVAVGARQHSEEEALAL IDAFLETPFSGDERHQRRIDLMKDYERSVRA >gi|292821499|gb|ACYT02000015.1| GENE 76 74050 - 74355 100 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTGPALCVRFGSFCRRSLPEVSRRCALRLIWSYRVGYRLLATLVAYLWLGASDGSLARA RRPRGIPNLSALCDDVLLLCVRVHAAELFRVTNVVNSSDFL >gi|292821499|gb|ACYT02000015.1| GENE 77 74865 - 75206 125 113 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQRCSRFQWGLIGSLQRCQWIQWWLSGVGKSAAGRHSGPARPVATDKGPEPRPRLLALAG EGEVHEEQVQRDDDGRDEETGDAQGAIVGVVAHDVAVGGEAHERDDREGDAER >gi|292821499|gb|ACYT02000015.1| GENE 78 75030 - 76289 1820 419 aa, chain - ## HITS:1 COG:Rv0924c KEGG:ns NR:ns ## COG: Rv0924c COG1914 # Protein_GI_number: 15608064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Mycobacterium tuberculosis H37Rv # 15 417 35 428 428 385 57.0 1e-107 MTTTDTQQRRKLIPLLGPAFVAAVAYVDPGNVAANITAGARYGYLLVWVLVASNIFAMVI QYLSAKLGLVTGQSLPALLGARMRKPGRIAFWLQAEIVAAATDLAEVIGGALALHLLFGV PLLWGGVIVGIVSMALLLVQGGGRQRQFETIIVGLLIIITLGFLAGLFVAPPSPSGMLGG LVPRFQGTDSVLVAASMLGATVMPHAVYLHSSLVNDHEADELGPSTGDARHSSGHLSRLL RATRIDIYWALSIAGLVNIGLLLLAAAALAGQSGTDTIEGAHAAISSTLGPIVGTVFAVG LLASGLASTSVGAYAGSEIMNGLLHIRVPIMARRLFSLIPALIILGAGAEPTWALVVSQV ALSFGIPFAIIPLMRLTANRDVMGDYTNNRPLRVTGFLIAAVIVALNLFLVYLTLTGQG >gi|292821499|gb|ACYT02000015.1| GENE 79 76460 - 78139 2433 559 aa, chain + ## HITS:1 COG:MT1331 KEGG:ns NR:ns ## COG: MT1331 COG0018 # Protein_GI_number: 15840742 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 559 1 550 550 616 57.0 1e-176 MTPEELATLIRATLLDAAAAGRISIDPSLVPDPVTVERPRVREHGDWATNVAMQLGKKAG MAPREFAQILADDLAAADGIDSVEVAGPGFINIRLGAGAAGELARTIVEAGAAYGRNETL SGRSINLEYVSANPTGPVHLGGARWAAVGDSLARLMAASGAAVTREYYFNDHGSQIDRFS HSLYARAMGREVPEDGYGGQYIADIADQVRADARAAGEPDPITLPEEEAIEVFRARGVEL MFAEIKERLHSFRADFDVFFHEESLHTSGAVAAAIERLRERGEIFDEDGAVWLRTTTYGD DKDRVLIKSDGQAAYFAGDVAYYLNKRERGADVAIYLLGADHHGYIARMMAMCAAFGDKP GENLQILIGQLVNLVKDGEPVRMSKRAGTIVTLDDLVDAVGVDAARYALVRVSMDTQVDI DLDLLSQHSNDNPVYYVQYAHVRACNVARNAAEHGVTRDAGFDPAALDSEADEALLAALA QFPAQVAQATELREPHRITRYLESLAATYHAWYGQCRVTPRGDDPVEPGHIARLWLNDAV TQVLRTGLGLLGVSAPERM >gi|292821499|gb|ACYT02000015.1| GENE 80 78144 - 79544 1636 466 aa, chain + ## HITS:1 COG:MT1332 KEGG:ns NR:ns ## COG: MT1332 COG0019 # Protein_GI_number: 15840743 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 19 462 9 445 447 364 46.0 1e-100 MSETASVGTLTCPTPDERPDLWPWSASREGGVLRLGGVDLTSVAADFGTPTFVLDVEAMR GRARVWASAMAEEFWDGYGMNGGDAFYAGKAFLSADVARLVAAEGMGIDTASLGELSLAL RAGVGPDRIGLHGNNKSDAEIRLALQAGIHRIFIDSMDEVHQIERIAADLGVVAPVMVRL KSGIHAGGNEYIATAHEDQKFGLSLATGQAYEAVAVIKDAAHLDFRGLHSHIGSQIFGTE AFAEAARIVIDFAALLKAELGLDVPAIDLGGGVGIAYTGQDPVPTSPVEVARALATVVRE RCAHHGLPIPHVSVEPGRSIAGPSMVMLYRVGVVKDISLEDGGVRRYVAIDGGMSDNIRP VLYDAAYTATLANRDPADASELARCRIVGKHCESGDIIIRDIDLPADIAGGDLLAVPAVG AYGYSMASNYNMLTKPGVLAVEDGSARWFIRPQTVDHLLALDAGLE >gi|292821499|gb|ACYT02000015.1| GENE 81 79683 - 81764 2645 693 aa, chain + ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 525 671 560 705 744 153 47.0 1e-36 MMGAAVNAVEILTVTIESRGTMRRTAARIGIVAALALSMGVAAVNAPSARAEEPGLVSAA RADNDEMNYAINLAGTNPEDLQRALALVPGAGGAALASYPEIGTFFAQSATPSFAPDLAA ALRQAGISIHSIGPTRVAPVLYYERVDLPTDKKDEAPQSGAAGGLNAMRDETASAAPAEA NEEIFNWGAVAMHAREAEAVNVKRAPVTVAVVDSGVEDTHPDLEGRVDTSRSVKCSVNGV ATQDFYGWRDEFYHGTHVAGIIAANHNDIGIDGIAPESTIVAIQATNDNRLIYPEYVTCA FMWAASHGVDVVNNSYSMDPWVYWSPTDPEQAAGLEAATRSIKYAQDKGLAVIAAAGNEG VDIDSPTIDNGSPTDVPTPTKNRAVKGSIRVPSMLDGVAQVSAVGQAYNVKPGLSLGRAE FSNYGQTIDFAAPGDQIYSTATTLFYRSGYAVADGTSMATPHVSGVAALIKSVHPELTGA QVIDLMKKQAAANYGRLNAPIDGKEYRGYGFLDALDAVSGGQDQADEAKAGTWMKDAIGW WYRYQDGSYPASAAIAIGGATYRFDARGYMVTGWVREAGQWFFHQASGAQASGWTQVEGT WYYLDPATGAMATGWVFVNGTWYYLSASGAMGTGWVRDGSTWYYLTLSGGMAIGWLHEGD SWYYLGSSGAMVTGTQQVDGTTYTFGPDGRLRH >gi|292821499|gb|ACYT02000015.1| GENE 82 81998 - 86314 5272 1438 aa, chain + ## HITS:1 COG:SP2136 KEGG:ns NR:ns ## COG: SP2136 COG5263 # Protein_GI_number: 15901950 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 1296 1436 462 601 621 156 47.0 3e-37 MRRNVARIGLVAALALSMGVATATAPPTRADDHTGLIAPARASAGLMNYAINLSPRASAE DLARATSLVASAGGVTLASYPELGTFFAQSESTSFAPDLAAALAKAGISVHSLGPTRVAA VPEGERQAAAPDPQPGPQSGEASPAQSGAQSGGPSSLRGQDATEADKPEEVVNWGAQAMS ATDAAAVPIAHAPVTVGVIDTGIDDTHPDLVGRVDTSRSVSCGHNGIPSQAYGSWRDDYF HGTHVAGIIAANHNGIGIDGIAPTASLVSIKASNDEQLMYPEYVTCGFMWAASHGVDIVN NSYSMDPWVYWSPSDPEQAAGLEAATRAIAYAQGKGLAVIASAGNDGMDNDNVTTDSGSP TDLDAPIKDRPVKNGVKVPAMVEGVSQVSAATRTNVETKPEWANLKRADFSNYGKSVDFT APGQDIYSTVPTAIFSSGYAKTSGTSMATPHITGIAALMKSIHPGFQGKQITDLMRKQAA MEYTRLEAPEDGKEFRGYGFINALTTMRRDQPQPTVQTLQYRVGKGEWKDVHGATLPAGP VTFYTEAIAPISHLHMDVAGLASVDRDGSGKYFDDALGASIENVDLSALLPEGADSVTAR VQVSATGINFDRQADDDTGREAVFTVSRDPNAAVTPAPAPDTDATPAPAGPAKAGITAPA RSNDQLPANYAVNLPKGTDNAAFQRAAAQASFHGGLVLAQYPAFGTFFVQSASPTFSPDL GAALVKEGISYDSIGPTRQAPVGGNEAVVPISYETRVAADAAIAAAPRSQGAQGDQDAAL TPDPQTGNGWHLQALRALEAQGVDVMRAPVTVGIMDQSVDDTVPDLVGQVDHDKSVSCSF NGIPNRDPAAWRWDDATHGTHVAGSIAAKHDGVGVDGVNPTLRIAAINVASRNGGFFYPE YIVCGFVWAAEHGISVTNGSYYVDPWKYWLPNDPEQAAGQEAVQRAVDYATSKDVINVVA AGNFSTDLDNLPTTDNSAPGDTWGAHVRDVTGAVYMPPKLRGTLSVSALQLPEGADPATG VLEPASWSNWGANSIDFAAPGAKIYAPLTSWYGKAYGNLYGTSQASPLAAAVIATLRQVH PEMNAEQIIALAKKQAGDPSNWDRLKPVKGREYRGAGLPNALDAVLKDQAKPVIGSVEYS TDGTTWQPLAGESVAGRVSIRVTVTGPVTSARLLVGEREVATGVGNGAFEGNSVTLQADG VDVSHPNGTGRFAGAATVTVEAMGRNNDARADDDATLQVPFTVSPDQVGPDEARSGRWVS GVFGWWWRYEDGTYPTSMQLRIDGAIYRFDARGYMVTGWFSEGGHWFYYGPSGGQAAGWV QVRGTWYYLDPISGEMASGWTKVRDTWYFLGSSGAMHAGWMREGSTWYYLADSGAMATGW ARIGSSWYHFATSGAMSTGWVKDGGSWFYLSSSGAMVTGARWIDGTRYVFDDEGRLQE >gi|292821499|gb|ACYT02000015.1| GENE 83 86546 - 86812 292 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189487|ref|ZP_06608207.1| ## NR: gi|293189487|ref|ZP_06608207.1| DNA polymerase II large subunit [Actinomyces odontolyticus F0309] # 1 88 2 89 89 164 100.0 1e-39 MAMYTSADGATFTDEDLERWGNQAENGVPYDGKHLGSSVAGRPISVGVGAKPFTLRLDRS RRAKLAEVAQERGTTPSQLVRDLIDSLE >gi|292821499|gb|ACYT02000015.1| GENE 84 86911 - 87240 121 109 aa, chain + ## HITS:1 COG:no KEGG:Arch_0338 NR:ns ## KEGG: Arch_0338 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 5 70 236 301 413 133 92.0 2e-30 MSVSVRGFIWVDMVWPWVIAYDLWNHAFLYNSLADYTWYCTLALLQACMIPAFTWAKGQW IWFRCFTLVFMDLHEYAPARGPGAALGHLQLRDDGPAREHRVCGARARG >gi|292821499|gb|ACYT02000015.1| GENE 85 87131 - 87259 157 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNTLLPEVLVPPSDIFNFATMDPRANIACAALALAANVALFA >gi|292821499|gb|ACYT02000015.1| GENE 86 87278 - 87529 231 83 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10446 NR:ns ## KEGG: HMPREF0573_10446 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 3 76 351 423 454 102 58.0 4e-21 MFRRNPITGVVYCELAEFRTIVREHCDDRDKYFLVDRIPETPEELGFEPDSPMPRADGYA AWMPWWRGEDRRHPSKRLSGSRQ >gi|292821499|gb|ACYT02000015.1| GENE 87 87958 - 88170 253 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFASRRVIKHRAPNGALRPDVGTDGGDGEADVIKHRAPNGALRLAVLRVLDGVLIDVIKH RAPNGALRPA >gi|292821499|gb|ACYT02000015.1| GENE 88 88146 - 88703 324 185 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISCIPVIKHRALNGALRQGNRGRILAVDCKGHKAPSAKRCIKTGRRSRHRCACCHRVIK HRAPNGALRLHEGLHRRREVAAAIKHQAPNGALRPVGRELLDDRIVAHVIKHRAPNGALR LHSTSHLVLSFRLVIKHRATNGALRHAQVTLEQLQLGLVIKHRAPSGALKHECSSSVDCL PVGES >gi|292821499|gb|ACYT02000015.1| GENE 89 88832 - 89149 241 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVIKHRAPNSALRRSVDSIRDVCEVAGHKAPSAKWCIKTNRSQEQVCKYHEFIKHRAPN GALRPSGLIGLVSEAASPAIKHRAPNGALRLNSELAHECLGESWS >gi|292821499|gb|ACYT02000015.1| GENE 90 89284 - 89484 265 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAYLDDVSVFDYRVIKHRAPNGALRLPHDEAGADGFDGGHKAPSAKRCIKTRTNLSHNQ LQPAPS >gi|292821499|gb|ACYT02000015.1| GENE 91 89692 - 89892 149 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRHKAPSAKRCIKTNHAGQPRWRAARVIKHRAPNGALRRALDVAREPIRRLGHKAPSAKR CIKTFR >gi|292821499|gb|ACYT02000015.1| GENE 92 90143 - 90301 181 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSFSILRYLFVSVRKHRAPNGALRHNESGELEGHESSVIKHRAPNGALRHP >gi|292821499|gb|ACYT02000015.1| GENE 93 91229 - 91528 287 99 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVRKHRAPNGALRLGIPSEAWATLDRVRKHRAPNGALRRHVERFQGLGKNLCQKAPSAKR SIKTCCAKPSNEMYLSVIKHRAPNGALRRIFSCVFQLWL >gi|292821499|gb|ACYT02000015.1| GENE 94 91566 - 91703 83 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSEEVGGFVGKHRAPKGALRRLLAGGLTAATALGLESTECQKVH >gi|292821499|gb|ACYT02000015.1| GENE 95 92464 - 92814 68 116 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNGLKTAVRKHRAPKGALRLIDRGFPDFLAELVRKHRAPKGALRLPHAHGRLARAKARVR KHRAPENFACNSLSPNFNERRKPRYVNGVASNLEGWKPNCMQHFPTTLQDQRQKVH >gi|292821499|gb|ACYT02000015.1| GENE 96 93969 - 94547 172 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189509|ref|ZP_06608229.1| ## NR: gi|293189509|ref|ZP_06608229.1| benzoate membrane transport protein [Actinomyces odontolyticus F0309] # 1 192 1 192 192 291 100.0 1e-77 MDARAIAADVEDAIGLACGFVAGPGVPRVDADAREGFLLVNVLGRHVGEARARANGRGGD GIDGLGQALVDWCREHEGGSDARVEQACPSGVPVKIEQSGVSKHARDRVGVRGLGEFVDN GRVGVGQAQVRECRAGHEAWVGRADGGSRQVVVAMVVVVDDSSAECVVSCARVVLGAVGV FRGEAAFEAFAH >gi|292821499|gb|ACYT02000015.1| GENE 97 95219 - 95512 292 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189511|ref|ZP_06608231.1| ## NR: gi|293189511|ref|ZP_06608231.1| putative CRISPR-associated protein Cas1 [Actinomyces odontolyticus F0309] # 1 97 1 97 97 184 100.0 2e-45 MEQLRPLLVDQTVMALLRTRKLRPEHGVVEAEAGGVWLGADGKKILVDAYEAACQRSVTG ALPGYSGSWPRHIAHSAQMLARAIDEPDYPWSGVAWR >gi|292821499|gb|ACYT02000015.1| GENE 98 95509 - 95790 187 93 aa, chain + ## HITS:1 COG:no KEGG:Rru_A1153 NR:ns ## KEGG: Rru_A1153 # Name: not_defined # Def: CRISPR-associated Cas2 family protein # Organism: R.rubrum # Pathway: not_defined # 3 81 35 113 124 77 46.0 2e-13 MIYIIAYDIADNKRRLRVAKTLESWGYRIQESVFQLRLDTATLARVRARLAALISESEDV IHIYPICSSCAGRADILGAAIALDDVGLCRGVW >gi|292821499|gb|ACYT02000015.1| GENE 99 95795 - 98002 1092 735 aa, chain - ## HITS:1 COG:no KEGG:Psta_1142 NR:ns ## KEGG: Psta_1142 # Name: not_defined # Def: protein of unknown function DUF324 # Organism: P.staleyi # Pathway: not_defined # 25 608 619 1156 1272 119 26.0 4e-25 MPEIHAAANRIPVLRTNTTLKNYPELADREPSSLDHFPAHTWSGSIRFSITAKTPLVYGN VDEDTGAISVPTTTVKDRGKATRTVPILPATMVKGMLSNAYERVTSSRLRVFGDYSDPLT YRMDPAECQKLVPAFVQPNKRTAVLLTGTHDRLPSVKRNNNSRPIPVMMAATLRTRQGDN TKFAPGMNNKRLLELVRPLQGQRYRPVEFDAKLVDNGTYAYWFIYALYTSTEPQRRIPLF DENTLTGEDLNEKLIKQRGYVYLTTDPDDISRNASTFEQKMGERVFFIERNSPTETATIP AGTDSHPSPIEKYFHVLESYLRNWDSEAGSTPNIFIRQNEEILTKKTASFCAYSLLSENS TGKKIVDALVPISVGRNAYAMSPLAVAKRSHVDPAEHFFELSPADRLFGYVAYHDKTRSD FDRDSDPASSFKGRISVTDVSLSDGEGIGDSVLRLRPLLNPRPSSARRFLTRVDGSNINS SGHKVRRSQYFSTEPKQALGATTYPIDRSAWALIDKETGFPKKALKTRSDTDNVTPEVKS YVKAGTKFEATIHYEALTHFELAWLLWILDPTNLVPRVQRQQRTSSTPSDQVGYLRLGTG KPLGLGIVEVTLSPDGLQASKSVANNGDTPSLCSAYTQLTGCLGTVATITDPTQFQVPRE YLMAPWVEAFQRSCFGYDDAFDVRHFTLDENKENNRTDWATGLPVEGAGVEPGVLWGSKS GAPISVPERRKKNRR >gi|292821499|gb|ACYT02000015.1| GENE 100 97995 - 98588 323 197 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189514|ref|ZP_06608234.1| ## NR: gi|293189514|ref|ZP_06608234.1| hypothetical protein HMPREF0970_00549 [Actinomyces odontolyticus F0309] # 1 197 1 197 197 353 100.0 3e-96 MNETNIDNHGHATNLLPCHLTTTNHIIGNATALTAYIDEKFAAHEFAGIVWTTNGTQRVP DVKSASFDDSRTYEIRLWQVIDSDSADSTLAHEFRWVNGVGAVELTLTKGTTNAASEGSE PKPVSGWFHKVSYLQHESAADSDADSTSEAPSAQTGKSKENATTKQMTAVEFIREEDKYG NTVVVDQLFTGEWKYNA >gi|292821499|gb|ACYT02000015.1| GENE 101 98585 - 101398 793 937 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189515|ref|ZP_06608235.1| ## NR: gi|293189515|ref|ZP_06608235.1| CRISPR-associated RAMP protein [Actinomyces odontolyticus F0309] # 1 937 1 937 937 1830 100.0 0 MTIYRYDMTIPVRVVSALHSGGVDEAPERPITDEDGRTVQPNAFVRNGLGEAILPGRSIK GAIRAAFEEHMNELGFSEEELKSLWGGEMRREVGTRKKQRGDGTDESLALRASALTFHHA VVWDRTRGDLPHRMSTAIDRATGGAADGALFAYEYLPVDTTFEICVSAEAQDPTREPPED KDAQSTTPSKETKGTPPAPPALVEKALQAIVTLLGGEFISLGGRTGSGWGAIDLRWKKVS CKKVAILSEQAGNNESTDFLSVVFSQSEPLKFKSDSKLTGNHPSTSIRIEWQAPSGLFVG MNKPDGIKSSEEDTVPAAPLRNWHLNDTHRADHGDATYPKVAHEDKASLLLPGTSIRGAL RSHCSRIARSIVSDSEGSDELTMAEDVHKQLAADPLLVRYLFGTTEYRGAVRIHDCEGQI PEDTGKDKPLKLTRNAIDRVTGSAAHGALYSELLYPHATWDPIEIEIDHAQLCRNICQDP GNCALSTVSASDQECERPAIKNRLRAAILLLTMAVTDLCKGVLPLGGGTGGGLGFIEVSC VRVNGLPDDTSPVEILFEAADHPEDSCKVREARANFARDILTRILTAFAEDGDEATSAEQ RVINLIRQWAELGPGDDQGSSVPSHFRPTTVRIGWNSPTGVFVHDPQADDGNTQYPLRAK TADNNGKNSTAPLLLPGTSIRGALRSRCSRIARTVLYADNPPSQVESFTQADSDGNQVPI DIHEQLAKEPRLVRYMFGTTEYRGAVRVRDCTTKDTGPSVTVTHNAIDRWTGGVVEGLLF NEVTYPHATWNDIVIEVDTARLLQNVKTESGIGGLSLDECLPFVRASWCLLCIALAELSA GTLPLGGRTTRGHGQVEVTSLSVAGADGQVVNTPPEELLWKRNDSSEDDARGGATALLAY LRNKTEKEPSYEDWAERLQKLEEPTNGASTPNESDEQ >gi|292821499|gb|ACYT02000015.1| GENE 102 101395 - 103485 1101 696 aa, chain - ## HITS:1 COG:no KEGG:sll7066 NR:ns ## KEGG: sll7066 # Name: not_defined # Def: hypothetical protein # Organism: Synechocystis # Pathway: not_defined # 16 676 6 595 791 100 23.0 3e-19 MTTNSPTTSPTASGHVTIVFTSDWGVSTGVGHAGRTHSTIERCGDDPVVRGTVITGVLRE QAMLAAKALDGQKDGKWTNFALWLFGQDPNSKLGSTPHPRHVLFSDATPASSIPVHDTVS LSIDPKTGTARDQFLRFTERAAAGILTGTFTLIDEAGASLSDQTTIDAAHFLLGVAGLMV RGIGSGRSGGDGECTVAVSDKDYTKTDLQDEKAADALTRILANRDNDDSPTYSSADVKAF ADCLRSRVRESLREIPALPKDLPKDSPQDIAMPDLQQSESGNTTWYETSLDIVLESPVVS YEVPFSNEVRSLDFLRGTVLVPWLHGLLRKNYPGNALVNSAIVSGDLRVSDALPVYGETP GLPVPFVLENEKVPEDKQDDKQPCTLFNRHIPINDQVCGDHTIPTRGRYIFVKSNVAPVT GWIGKPSLIGRQSTAINSETGAAKDGQLFLVRALPAGLTLHASVVVSKQLLSALRGTDAT SEASPITLDLGIAEQQAFLGSRKLTGTFGRARCTVGSTFTRVGSTPPPVEGPVTDEGTQA SSCEHTEVVSLWFTSDVLARSSALGPSGSVEDLELAFRRANVPVTVVQESPDQDSGDKNR KRILTAIRHRRVDSWSPRDNAPRATRLAIQAGSVVQVRLSPDDLGALETLGHIGVGELTP QGYGRFLVDSPTLAEATLPLFKTDSKSFTAPTEAVS >gi|292821499|gb|ACYT02000015.1| GENE 103 103482 - 105455 1216 657 aa, chain - ## HITS:1 COG:no KEGG:sll7067 NR:ns ## KEGG: sll7067 # Name: not_defined # Def: hypothetical protein # Organism: Synechocystis # Pathway: not_defined # 5 499 3 440 558 134 28.0 2e-29 MGSTLVMLQTNSNQPFIFSSPRLREQIGASFEITLLSRWVKEAAFDMKLPSMSTIEKGIK ALPASFWVSDSSGKVIVRFTESDGNPEKLARQLIREVTLRALTDAPGLDVTGVVVQTSSN TVDAGDLNALDSVFLEYSLNRRPALARFPQFPFLDRADESALPASAALSEEELDRIREYA GGSLMVPILSDDHGQVPTQTGKDKDRSLSLPSRVKRTWSRSARRLQLREVIARQDSSLSD EEVRDRIGNLNEDPFQLERAFQDVSDEDGATKPLPELSSVGVIHIDGNGVGAIMRDLGRA FDTVDARLDSLKDAAYQRRDNPCSIKHDRFQWFVMEVNYRLDGVVNQAVAEAWQTVDNIA GVNRLKTLPVVPVLVGGDDVTVYTDGRYAIPFAEAYIRHYERLTGEDDLLRELAVIARAP DPGPLTASAGVAIIGRNFPFHIAYDLAEGLVSRGKKLGKKPGASPCSTIDFHVLRDTTVL APQDTLEEYEGRTQRPFLIGHYAPERIGGATTASASGGAPQAQDQWKKVLQAVAAFDGKD PDSPGKTVGDPFPRARANRIVKLLAEGKEEQAATEWGDALQNAPGAGLLAQQLKLLPPHS SSSDEAGESLEQIKWLLDLIDLSENLPDGYIACRIRGDADISGSAEAADNSTEGGAK >gi|292821499|gb|ACYT02000015.1| GENE 104 105469 - 106134 323 221 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189518|ref|ZP_06608238.1| ## NR: gi|293189518|ref|ZP_06608238.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 221 1 221 221 411 100.0 1e-113 MSIPSHRNRLCIFTLLLIGSTIITIFVLLEYIQQKNETWHGIAENFAFPFIYSIFGILIA GVIGDAIATSVLDHYNSRLASGLTQRTIQLIGAPSLTSKLHEDIKKSALIKSKVITSTMS VSSESDLVVLSLDLDWYSGPRPQDGPTADKLVKGESELTRVINELTESQALIVLTLGTLD RTADVTKTFFERRFSTIVNAQGRILSDIHSLLTTLPPRNRE >gi|292821499|gb|ACYT02000015.1| GENE 105 106155 - 106853 209 232 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189519|ref|ZP_06608239.1| ## NR: gi|293189519|ref|ZP_06608239.1| hypothetical protein HMPREF0970_00554 [Actinomyces odontolyticus F0309] # 23 232 1 210 210 392 99.0 1e-107 MSPERAAQFPTLAHRPVHGSGGVKPYSLGELSRSESTFGVEVRFLDDRLVDTLDAWLSWG GVMRLGAGTDDDAVLVAVEGQVIAQESWEELVERDGDTTWEVRLVTPTTFSSKGQHVPGL NPATIATSLQQRWWAWNRRLAPPRINRHEMASVLATQDYTRSSMVSLAMPRNSGQGRLSS RRIPAHEGHLRISGVEGAEATRVFSRLMALSAYTNVGSHTSYGMGVIDAVAA >gi|292821499|gb|ACYT02000015.1| GENE 106 107418 - 109853 3799 811 aa, chain + ## HITS:1 COG:SP2190 KEGG:ns NR:ns ## COG: SP2190 COG5263 # Protein_GI_number: 15901997 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 657 808 522 673 693 191 57.0 5e-48 MHQRSWKTLIAGGAALAAGLTMTALGAPAHAAGVPGITSDARARDEVMNYAVNLPADATR YDFNAAVSKASENGVVLAQYPEFNSFFVQSVKAAFAPTLGKSLVDAGISYHSIGPTRYKM VTGAEVRTDQPQTTTSEANAVADAAGTHPTGLAADSQLNDFVPDEGDANAWGLAAIGAID AQQVDVPREKVTVGVMDTGIDPDHKDLKEHLDADRSVGCQVNGIPNTDPAAWKDDHYHGT HVAGTIAAAHNAYGVDGVAPDATIVAIKVSNEAGSFYPEYVACGFDWAAEHDIDVTNSSY YMDPYAFWMPNEGSQAAGLEAASRAIRYAKDLGVVSIAAEGNDNDDHDNPTIDKASPNDV EGAAAERNVEGGIDVPAMLNDSVVSVSALALPTGTDPATAKLERSGFSNYGKNSVDVAAP GSRIWSTVPTWKKNPPFGYLSGTSMASPHAAGVAALIKQIHPDYTPDQTIDLLKKQAGYT YDRLAEPTDGKEYRGAGLVNALAAVLKDQPQPVLGPVEYSRDGATDWRPLADANLSGTVY VRATVGGPVTNASLKVADKEAVSATGTGAFENNEVTLVAGPYAAADLMTDAPHVEVTVSA EGRNKDARADDDVKDTIYFHVDESVHEDGAWVNSDGGWKYCYGNGSCVRNKSIVIGGETY YFNDDSVMATGWVSFDSAWHWMNSSGRMAKGWTKVGGAWYYLDPATGAMATGWANVDGTW YYLNASGAMATGWVQVNGSWYYLNGNGSMATGWTAVNGKWYYLTGNGAMAIGWVNDGGTW YYLDASGKMVTGWVSIDGTRYHFAPSGAWLG >gi|292821499|gb|ACYT02000015.1| GENE 107 110064 - 111461 458 465 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 10 457 5 444 458 181 25 2e-44 MSTNAIENVDLLVVGGGKAGKSLAMERAKAGWKVAMVERQFVGGTCINVACIPTKSLVNS ARRLSDARSDEAFGVVGTQGARVDLAKLRAHKEGIVGAMVGAHEKMFAASGLDFIRGEAR FTGERTVTIALEDGGERTIRGERVLINLGSRPARPAIPGLWESGAWTNEEILRLEELPSS LAIIGASYIGVEFASMMATFGVDVTLISSGDHVLPREDEDAARVVEAGLEAAGVRIVPGR AESASREGNTTTLTLSDGSTVSAEAVLVAVGRVPNTDGIGLDEAGVELTDRGFVAVDEHL RTSAEGVWAAGDCAGTPMFTHASWSDFRIIRAQLTGASLDDATTTTKGRTIPYAVFATPE LARIGLSEGEAREAGLDVRIAKIPTAAIPRAKTMRYAGEGFWKAVVDANTHQILGATLIG PNVSEVITAVHVAMAGGLTYEQLRFLPIAHPTMGEGLQVLFDSLG >gi|292821499|gb|ACYT02000015.1| GENE 108 111679 - 111933 329 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509442|ref|ZP_02045084.1| ## NR: gi|154509442|ref|ZP_02045084.1| hypothetical protein ACTODO_01973 [Actinomyces odontolyticus ATCC 17982] # 1 84 1 84 84 147 100.0 3e-34 MRALEIGDFKEDVGAALARASSGEVVTLTEEGQPVAELGPVRMSTYAQLRELGLERPAMT DLDAYQMPSKNLPDGRGIVGKLDD >gi|292821499|gb|ACYT02000015.1| GENE 109 111960 - 114563 1721 867 aa, chain - ## HITS:1 COG:Cgl0142 KEGG:ns NR:ns ## COG: Cgl0142 COG1643 # Protein_GI_number: 19551392 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Corynebacterium glutamicum # 89 866 17 716 717 448 39.0 1e-125 MPTLDELVSHPPHLPVTRALSDIAAAARPGGCAVITAPPGTGKTTLLPPAVAVALAQHDA AVGRVLVTQPRRVAARAAARRIARLLGEEVGGQVGYSVRGDSRVSERTHVEMVTPGVALR RLQRDPELPGVSALIIDEFHERDLDTDLTLAFALDARSALRDDLFVALTSATLEASRTVD FLRASTGEEPALVDIPGDIFPLELRYAPPPRGVEAVGAIGDERVGVRREYLAHVARTVEE TVAATEGSVLVFLPGVGEIETVRGNLRLGDIPVLALHGQLSAAEQDRALSPASGRRVILS TSIAESSLTVPGVSVVVDAGLAREPRFDAGRSLSSLVTVPAALARLEQRAGRAARTGPGI AVRVMDAVDVARRPAQSAPGIATQDLTDARLQVASWGTPVEELSLLDAPPAGTWEAARQR LSSLGAVDEAGAATALGRTLASLPLDPPLGRALLASSALLGASKAARFVALLSEDLRVPG ADLGALERRLGRGGASDAGGTHAQAARVKETRARLERLAQRLPASAPDDPLASVVATHQQ AGSRTREDELALTCALAYPEWIARRRAGSAAYILAGGVGAELPQGSPLEGQEWLAVASID RAPASRHARILAAVPLSEEDALAAGAALLETRTQANIDKGALRATRTRALGAIPLKSTPA SSLSEDEAVALVADHLAARGLGDLGWGKEASSLRKRMRVLHDVLGNPWPDVSDEALACSA HEWLLPWAKRLAQGGSLSNVSMLDALRSMLPWPDAARLDELAPEKMPIPAGGTRPIDWSG AHPVLTLRVQQAFGWTDTPRLVDGRVPLVLHLTDPAGRPAAVTSDLTSFWAGPYRDVRAQ LRGRYPKHPWPEDPLHAEPTNRAKRRG >gi|292821499|gb|ACYT02000015.1| GENE 110 114702 - 115754 1469 350 aa, chain + ## HITS:1 COG:Cgl2236 KEGG:ns NR:ns ## COG: Cgl2236 COG1702 # Protein_GI_number: 19553486 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Corynebacterium glutamicum # 33 339 26 334 339 339 58.0 4e-93 MTTENTAPALAAATLAHTTGRVTIPADMDPIVVLGVADQVLRALERGFPHVRFLVTGREI SLAGTQADIDVAAGLLEELIGMARRGTALDATAVEQAVGLLGRLTSGEAPTEEILSARGR SIRPKTPGQKAYTDAIDRATVVFGIGPAGTGKTYLAMAQAVRRLLSGEVRRIVLTRPAVE AGENLGFLPGSLTDKIDPYLRPLYDALGDMLDPEALPKLMAAGTIEVAPLAYMRGRTLND SFIILDEAQNTTVGQMKMFLTRLGFGSKVVVTGDASQIDLPGSQTSGLSVVENILGDIDD IEFCHLTSADVVRHELVGAIIDAYQRFDDRNAARRARTRSHNTARREYTS >gi|292821499|gb|ACYT02000015.1| GENE 111 115751 - 116200 717 149 aa, chain + ## HITS:1 COG:Cgl2235 KEGG:ns NR:ns ## COG: Cgl2235 COG0319 # Protein_GI_number: 19553485 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Corynebacterium glutamicum # 3 142 4 147 196 138 52.0 5e-33 MTEVINETDYEINEAEFSALADYVLDQMHVSSDAEVNIIFIEPEPMEDLHVRWLDLPGPT DVMSFPMDELRPGTADHPTPPGMLGDICICPQVAARQAAESGHSAAEEMLLLATHGMLHL LGYDHATDAEREVMFALQRKLLLTFLASR >gi|292821499|gb|ACYT02000015.1| GENE 112 116197 - 117552 1593 451 aa, chain + ## HITS:1 COG:Cgl2234 KEGG:ns NR:ns ## COG: Cgl2234 COG1253 # Protein_GI_number: 19553484 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Corynebacterium glutamicum # 21 422 8 419 440 226 36.0 8e-59 MILPLQASPASSILDVPSVALLVLAVIALVFASVAQSVEQAVQRLTLAGVEDLIEEQRRN ARVLYGLVDHRQRTLLSLRAFRTFWQVVYAVMGTIILVDTRLPWWAVALIAVLVIAALHL LFVSFLPAQWGARNPEGIALAGTRFADRLARLSHLVDPLLTRVRSSRPAPEPTEAQVRAE LISDLREIVDEVGEPESFEEEDRDMVRSVLDLGHTLVREVMVPRTDMVTIDADTPAPSAL RLFVRSGFSRVPVVGDDVDDIRGILYFKDLVSRWEATGGQLDMRAEQMMRPAEFAVEMKP ADDMLRQMQAERFHMAIVIDEYGGVAGLVTLEDLLEEVVGELTDEHDRHSIEPEEVEPGV WRVPARYPISELGELLDREIEDEDVDSVGGLLAKAIGRVPLPGATGTLAGVIMTAEEARG RRRQVSTILCRLDPDAQLLTSDLNPADDKDN >gi|292821499|gb|ACYT02000015.1| GENE 113 117554 - 118792 1563 412 aa, chain + ## HITS:1 COG:MT2433 KEGG:ns NR:ns ## COG: MT2433 COG1159 # Protein_GI_number: 15841876 # Func_class: R General function prediction only # Function: GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 114 412 3 300 300 330 58.0 2e-90 MRFPSDDELMAGPNAFGDARIEVAPDAADPEADARAQIDVGVSDDTEDEAGAQPGDDEDF EDSEEDEDDDEYEDLEGLEDEEDADLDAFEAMTSLASLREDAAATIEMPDFPEDFRAGFV SIVGRPNVGKSTLTNALVGHKIAITSGRPETTRHNIRGIVHGDNYQLVLVDTPGYHRPRT LLGKRLNDMVREALSEVDVVLFCLPADQRIGPGDQFIARELRGIKRPIIAVATKCDAVPR ERVMKHLLSIEKLGEWAAIVPVSSVEGKGIDHLREVLAQTVPLSPPLYPEGDVTDESRDT LIAEFIREAALEGVRDELPHSLAVQVEEIIERPRREGDDRPPMLDIHVNVYVERDSQKAI IIGRKGSRLKQIGTQARAHIEELLGRRVYLDLHVRTAKDWQSDPKMLGRLGF >gi|292821499|gb|ACYT02000015.1| GENE 114 118794 - 121259 1944 821 aa, chain + ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 5 821 96 918 922 503 38.0 1e-142 MPSVIRVRGARVHNLKNVDVDVPLNAFVAVAGVSGSGKSSLALGTLYAEGSRRYLESLAT YTRRRISQAAKASVDEVAHVPAALALRQRPGVPDVRSTFGTATELLNYLRLLFSRVGSYL CPNGHRVPPSRNVALEVPLTCPQCAASFYGLGAEEMAFNSGGACPVCEGTGVQRVVNRAS LVPDESLTIDEGAVSPWGSLMWKLMKDVAREMGVRTNVPFRDLSDAEKAIVYEGPAEKRH IVVPTKTGGAELDFTYFNAVATVENALSKAKDEKALARVEKYLVTRTCPACDGTRLGERV RSTLIEGIDLGEASRLTLTELREWVQRVPGLVPDEVAPMARVIVEEMTEPMDRLVQLGLS YLSLDRASSTLSNGERQRMLLARAVRNRTTGVLYVLDEPTIGLHPSNVDGVLAIIRELLA DGNSAVVVDHDTRVLAAADHLIEIGPGAGVDGGSVIFQGPINEASHAPASRIGPYMAGVR RVERAAGESDQGADIDGRGVLHLETNQIHTVRPLSVDIPLGSLTAVTGVSGSGKTTLVLE SLVPALRARLAGEPLPAHVRDVDAAGISRVNLIDATPIGVNVRSTVATYSGVLDELRRAF ARTEEAQAAGLKPGAFSYNTGSLRCPTCDGTGQITLDVQFLPDVDIECTDCRGSRYGARA SQIRRDGLSLPDIMAMSVDEARMAVRGLKKAGALLETLAGLGLGYLTLGEATPALSGGEA QRLKLASEMGRRQEGTLFVFDEPTIGLHPYDVQVLLNVLQHLIERGATVLVIEHDLDLIR CADWVIDMGPGGGIEGGRIVAQGTPSDIVDSEASVTGRYLR >gi|292821499|gb|ACYT02000015.1| GENE 115 121355 - 122029 903 224 aa, chain - ## HITS:1 COG:DR1909 KEGG:ns NR:ns ## COG: DR1909 COG1556 # Protein_GI_number: 15806908 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 4 223 6 211 212 120 41.0 2e-27 MSTTTMDAKTAILARARDAISRSQQGRPVRPIPRDYIRSTEHAPGSDAVIEEMIETLEDY SAQVVVVSKESEVADAISKFLADQKATSVVVPTGLDEAFKKAAARDGRTVREDSREQAIP TLELDEIDAVVTRCRVAISLSGTIVLDGEPDQGRRAISLVPDTHVVVLKASDIVPTVPQA VEILGKNPTRPMTWIAGGSATSDIELVRVNGVHGPRFLRVVIVK >gi|292821499|gb|ACYT02000015.1| GENE 116 122031 - 123635 2185 534 aa, chain - ## HITS:1 COG:DR1908 KEGG:ns NR:ns ## COG: DR1908 COG1139 # Protein_GI_number: 15807655 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Deinococcus radiodurans # 36 367 13 343 347 388 55.0 1e-107 MTATFIGMPSAPESHTGGWRTTVTIPEDTLRWGPTFPEGAHKTLANTQMRRNLGHATRTI RTKRGQRVAEMPDWEDLRNAAEAVKFEVESRMPELLEEFERNVTARGGIVHWARDKHEAN RIIADIIKSKGVDEVVKVKSMATQETNLNEYLKDQGIHARETDLAEMIVQLADDMPSHIV VPAIHRNRSEVRGIFLDRMEDAPRDLSDDPTELTAAARSHLRKKFLHAKVAVSGTNMGVA ETGTVSIFESEGNGRMCLTLPDTLITLMGIEKLVPRFQDIEIFSQLLPRSATGERMNPYT SMWTGVTPGDGPQEFHLILMDNGRTKVLADPIGRQALACIRCGSCMNICPVYQHTSGHAY GSVYPGPIGAILTPQLTQGLDEHDPVHTLPFASSLCGACGEVCPVKIDIPTILIHMRART VDVKRNLVPDVWDLAMGLSTPVMSNAKLWKAANVPTKATRLFAKKGAIGALPFPASLWTR ARDLPVAPKETFREWWKRTHKDSDANAPRTDAPATGIPLASEHGMTTNTTPKEA >gi|292821499|gb|ACYT02000015.1| GENE 117 123637 - 124434 1042 265 aa, chain - ## HITS:1 COG:DR1907 KEGG:ns NR:ns ## COG: DR1907 COG0247 # Protein_GI_number: 15806907 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Deinococcus radiodurans # 1 251 1 246 247 264 52.0 1e-70 MRIALFSTCLADVMFPQAAQATVTLLERLGHEVVFPEDQVCCGQMHANTGYFEDAAKITR NHVKTFEPVLDGQWDAIVVPSGSCTGAARHEQKVVAEHVGDERLAKQSQRIAEHTYDLTE LITDVLGLEDVGAYFPHTVTYHPTCHSLRVAKVGDRPYRLLRAVEGLTLVDLPDAEVCCG FGGTFAMKNSETSTSMLADKVTNVMSTRAEVLVMGDYSCLMHVGGGLSRLNSGIRPMHLA EILASTKDQPFEGNISFAPESAQVI >gi|292821499|gb|ACYT02000015.1| GENE 118 124748 - 125308 541 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189533|ref|ZP_06608253.1| ## NR: gi|293189533|ref|ZP_06608253.1| lipoprotein [Actinomyces odontolyticus F0309] # 1 186 1 186 186 306 100.0 3e-82 MKLPLKALVPLLAIAALATACNPFTPRNTPTAAPTQYPQDPRFAEFVYKSDEEPTVQDRM DSVNLRWPNMEASEVHVVVEYSPALAFIPAQDPEFWLTAVATVPDETIQLLAEGETTNTL LPGIYPHLYEYVPQECKFTTIDPEFADKALAPDKSSIPDDFGPMDIEALAMSEDCHLLVF TALGHS >gi|292821499|gb|ACYT02000015.1| GENE 119 125329 - 125898 507 189 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189534|ref|ZP_06608254.1| ## NR: gi|293189534|ref|ZP_06608254.1| hypothetical protein HMPREF0970_00569 [Actinomyces odontolyticus F0309] # 1 189 1 189 189 362 100.0 7e-99 MKLSLKTIVPLLAVAALTTACNPFTHKNTPTAAPTQYPQDPRFSAFTYDTADELKVEERV DVFNTYMPKLGATAGHVVVAYFRDGASRMPTPDRQFWVTGVAEVPDTTITMLVDDNIGAS SLLPGIHPSLYEYVPEGCTFTTVDPAVANKVLGTDPEAIYSEWGSFEIREFAVSADCNLI IVTGDGLDA >gi|292821499|gb|ACYT02000015.1| GENE 120 125978 - 126523 504 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189535|ref|ZP_06608255.1| ## NR: gi|293189535|ref|ZP_06608255.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 181 1 181 181 329 100.0 4e-89 MKAVFRLSLPILAVAALAAACNPFVHKATPQYPKDPRFSEFVFRSDEEPTVKDRTDSVNV RWPNMEASEAHLTIAYSSQTGFLPDKDPEFWLTAVATVPDETIQLLAEGAATDTLLPGIY PHLYEYVPQGCKFTTIDPEFADKALAPDKEKIPHDFGPMDIQALAVSEDCHLLVFTALGH S >gi|292821499|gb|ACYT02000015.1| GENE 121 126527 - 126886 314 119 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189536|ref|ZP_06608256.1| ## NR: gi|293189536|ref|ZP_06608256.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 33 119 1 87 87 184 98.0 2e-45 MKISQLLSTDGLDQLFPVHEYFQILDRDVTLIVEETLLGPSDRLLIIFARANNEWRDVLA EHCAGEYTRELHLPADHAHLNNETWYTGQDLPSFLGISHHPTDVAICGNYVYISMFFGA >gi|292821499|gb|ACYT02000015.1| GENE 122 126883 - 128091 530 402 aa, chain - ## HITS:1 COG:no KEGG:Srot_0732 NR:ns ## KEGG: Srot_0732 # Name: not_defined # Def: hypothetical protein # Organism: S.rotundus # Pathway: not_defined # 179 395 170 385 395 191 47.0 4e-47 MVTKTELYALDLSSFTTAIESLDKQLRANREKLDDIAHAKEILSSNMQGQSAQAMISKLD TLEQRINAHMTAIQQTQAALTTYRTNKQQLQRNVIDYVNGVELDGFAVSNVWTIRPSDTM LAMLSPVYIGAKFIAAATKQQRLTALVETFERYDLQASLDSGSDVQPFTTSGGFSTIEPD RTIAWDNDFPHGSKAGQDTPEDHYNWWKWKAMLEIGARGIKNIPDAANFYAHFRDNTGTP MTFDYERAYKEDAGVRNRVNARVNDSLQAANEAVSAGMTETTLYSPATSEGPYPVTENWR KTIGGHTNYTTTNVEVSGDTVTATVTVHARDRYNFDRDKADIDSGTPDAVNGRFEELGWA QSFDTSGSLTQTYTWKVGEEPPTLPTDTTESESGRGLRGRNR >gi|292821499|gb|ACYT02000015.1| GENE 123 128097 - 128381 274 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189538|ref|ZP_06608258.1| ## NR: gi|293189538|ref|ZP_06608258.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 94 1 94 94 153 100.0 3e-36 MAVPDLSFSSDALRTAAQYVDEAATCTEVTPPTGDPCSHVYAQRVSKPINDLNDEETAIQ DELKAMHSDMLETLQAFEDMENTIASSFNASNEG >gi|292821499|gb|ACYT02000015.1| GENE 124 128477 - 130168 2401 563 aa, chain - ## HITS:1 COG:BS_yvfH KEGG:ns NR:ns ## COG: BS_yvfH COG1620 # Protein_GI_number: 16080472 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Bacillus subtilis # 20 551 3 553 563 257 33.0 4e-68 MSHTLTRGAAMTSLLLAQSFTPSTTAVAGNVFLTAVVGLLPLVVFFVLMGVFKVATHWCS IISLVLSLGIAVFAFKMPVGMALLSGTQGAAMGFMPIIYIIIAAVWLYNLTEKSGRSSDL KAVFNTIGRGDQRAQALIVAWCFCGLLEGLAGFGAPVAITCAMLVTLGVPKIKAAVVTVV GNAINVGFGAMAIPTTTAGKLGGAEPVVVAGDMGHLTWIFCLFIPLLLLFILDGGRGVRQ LWPLALVAGLAAGAGHFFTPSISYELTAVVASLLGFAACYVFLLFWGPTTPAECATEADE ADKPTGSRIGLALLPYVLVVVIIAITKLAKPVAAFFSSTDVKIPWPGIYGNLLTADGSPS TAANYNLQILSNPGTWIFVTGIIVAIVYGTNSSNGRFQTSVGEMFAVLPRTIYSLRMAIL TIASVMALAFVMNFSGQTTSIGAALATTGAAFAFLSPILGWIGTAVAGSATSAGALFANL QSTAAAGAGLDPSILLAANTIGGGLGKIVSPQNLAIAATAVDSKGSDAEILKKAAPYSIG LLLVLCTLVFVASQGWLGAYMPH >gi|292821499|gb|ACYT02000015.1| GENE 125 130320 - 132074 2391 584 aa, chain + ## HITS:1 COG:ML2324 KEGG:ns NR:ns ## COG: ML2324 COG0119 # Protein_GI_number: 15828249 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Mycobacterium leprae # 12 583 41 605 607 639 56.0 0 MKTTSAVPVPSGSRMPIRKYRPFLDTNPVDLPDRQWPSKRITKAPRWMSTDLRDGNQALI EPMDPARKRRMFDLLIKLGYKEIEIGFPAASQTDYDFVRSLIEDDAVPEDVTISVLTQSR SELIERTVEAMVGFPRATVHLYNATAPVFREVVFHADKAQTIELAQSGAREIIAQAEKRL GDETIFGFEYSPEIFVDTELDFALEACESIMDVWEPGEGREIVLNLPSTVERSTPNVFAD QIEWMSRNLSRREYVALSVHPHNDRGTGVATAELALLAGADRIEGCLLGQGERTGNVDLV TLGLNLFSQGIDPGIDFSDVDAIRRTVEYCTQMETSPRAPYVGDLVYTSFSGSHQDAIKK GFTARKAKVDAAGGDEEAVVWELPYLPIDPHDVGRSYEAVVRVNSQSGKGGVAYLMSTAH ALELPRRLQVEFSRIVQRHTDTYGGEINAATLWQIFADEYLPTSAAPGLEPWGRFEMRSS QVSSIDDEHVELNATLTDGGETVKVQATGTGPIDAFVSALHEFDLDVRILDYSEHAMSQG RDARAAAYVEAAVDGQIVWGVGIDSSITRASYKAVISAVNRALR >gi|292821499|gb|ACYT02000015.1| GENE 126 132145 - 132729 855 194 aa, chain - ## HITS:1 COG:BH3394 KEGG:ns NR:ns ## COG: BH3394 COG1309 # Protein_GI_number: 15615956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 7 172 8 167 186 72 25.0 4e-13 MPHPDAKERLARALRDALTTVPLSKVTVSGITRTAGVTRQAFYYHFSDIRDLTVWVFKRE VADQIIAQATYEDWSDGLLAMFVWMQNHPEETRSVVSSLGMEDLQIFLHKQLRAVMEPIV DQHCIDLRVTEDDRVFVTDHFTLAILGHVSQWLATGMSTDPYILTERIARVLDGQVRRSL EALAAAPIPDAQRT >gi|292821499|gb|ACYT02000015.1| GENE 127 132974 - 133513 776 179 aa, chain - ## HITS:1 COG:no KEGG:PFREUD_13230 NR:ns ## KEGG: PFREUD_13230 # Name: not_defined # Def: transcriptional regulator # Organism: P.freudenreichii # Pathway: not_defined # 7 178 35 219 244 112 31.0 6e-24 MAPPIDAREKLGTALRQALTQTPLSKISVSALTRSAGVTRQAFYYHFNSLNDLNAWVFRT EVTAHLTTSSGEWLDAIEATMTWMHAHHDETAAAMKTIEANDLWAFLASHIQELIESRLP SSASATARDVVAQHFALATTAHMAQWMLSGLEVNPSLAIARMRVLMTDQTTPALGRLAK >gi|292821499|gb|ACYT02000015.1| GENE 128 133756 - 134493 551 245 aa, chain + ## HITS:1 COG:MT2431 KEGG:ns NR:ns ## COG: MT2431 COG1381 # Protein_GI_number: 15841874 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 1 242 1 242 265 237 50.0 2e-62 MKSYRDEAIVLRTHKLGEADRIITLLTAEHGQVRAVAKGVRKTTSKFGARVEPFSVIDAQ LHRGRTLDTLTQVASIAQYGDAIAANYDLYLAATVVVETAERLTADAHDGTHSQYLLLLG ALNALARGRHDPTLIRTSYTLRALALAGWAPSCFDCAVCGTQGPHTSFSIPDGGTVCDTC RPPGASSPAPDTVALLGQLLSGDWERADRCEPYARTEASGLISSYTQWHLERRLRSLSVI DRSHP >gi|292821499|gb|ACYT02000015.1| GENE 129 134490 - 135314 994 274 aa, chain + ## HITS:1 COG:ML0634 KEGG:ns NR:ns ## COG: ML0634 COG0020 # Protein_GI_number: 15827262 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Mycobacterium leprae # 30 267 59 296 296 277 55.0 1e-74 MTDLRPTPMDRAPNDPTAPLLGPGQWHCEAPVFRKGEVPEHVALIMDGNGRWANSRGLAR TEGHRAGEYALMDTIAGAIDAGVRYLSVYTFSTENWKRSPAEVSFIMNYASDVLARRTDQ LAQWGVHVRWSGRRPKLWKSVINALEKADRATSHCKALDLIMCVNYGGRAELADAARSIA EGVAAGRLSPRGVTEKTLSRHLYLPDVPDVDLMIRTSGEQRLSNYLLWQMAYAEMMFVNI PWPAFDREELWGCLEEYAGRDRRFGGAIDRVAQS >gi|292821499|gb|ACYT02000015.1| GENE 130 135311 - 135853 701 180 aa, chain - ## HITS:1 COG:L31711 KEGG:ns NR:ns ## COG: L31711 COG0586 # Protein_GI_number: 15673772 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Lactococcus lactis # 18 139 10 125 160 70 40.0 1e-12 MFAAGIDSMVPAFAREGIWLFVFLFVVVFFRAQATYWLARGAASGAVLATGRQGFLGAMA RWFDGPVPRKGAAMLDKWGIIAIPLCFLTVGIQTAINAGAGLVRMRWSTYTIAMIPGCVL WALLYGLGTLAVFAAAIRAVAGSPWGWAGLALIIALIAAKIVWGRRKRRAVDAALASDEA >gi|292821499|gb|ACYT02000015.1| GENE 131 135967 - 136356 485 129 aa, chain - ## HITS:1 COG:Cgl2228 KEGG:ns NR:ns ## COG: Cgl2228 COG0735 # Protein_GI_number: 19553478 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Corynebacterium glutamicum # 3 128 17 142 144 123 49.0 7e-29 MQRMTKQRQAVLDELTRVSDFRSAQQIFEDLHVQGQRVGLATVYRSLQSLADDGRVDTLR SSDGETLYRSCTTHHHHHHLVCRECGFTKEIEQSQIESWVDSVAAAHGFGDVEHSLELFG VCASCQSKK >gi|292821499|gb|ACYT02000015.1| GENE 132 136370 - 137299 1221 309 aa, chain - ## HITS:1 COG:lin1484 KEGG:ns NR:ns ## COG: lin1484 COG1108 # Protein_GI_number: 16800552 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Listeria innocua # 5 287 2 283 292 128 29.0 1e-29 MIDALTTLLSSQMMQRSLLAALIVGLTAPIIGTYLVHRRLAMLGDGIGHISLTGVALGWL AGTFANVSPADSWAIPGAVIISLLGAITIELVRQSGRTSGDTALAMLFYGGIAGGVLLIG LAGGTSAQLNSYLFGSISTVRWSDITLITLLGVAIVALGVGLAPALFSVTNDEDFARSTG LPVRTLSLLIAILSALTVAVAMRVVGSLLVSALMVIPVAIAQLGARSFRSTMGIAMALGV IICTCGLSLTYFVDLSPGATIVVGAICLYAIGFTIRAIVDRIRRVRRLRAARGHNQHPER EPLAHADAS >gi|292821499|gb|ACYT02000015.1| GENE 133 137313 - 138137 274 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 36 236 21 217 311 110 32 5e-23 MTTTDNPTTAGASFAEATAVVRLHNLHVAWDTDLILHGISLDIPACQTVAITGSNGSGKS TTLKALLGTAPITSGDAQLFGRSISARRRVPWNKIGYVPQRISSGGAISASAIEVVRSGL LGPRRLWALPGDTAKAMSALERVGMAHRAHSPLNILSGGQAQRVLIARALVRRPELLIMD EPMAGIDATSRARLAQIVAEAKAEGTTILIVLHELGELGPLLDRELHISAGHVSYDGPPH IEDDHEQHHGGGDHCHSTTEPGPATRDRGLVSGI >gi|292821499|gb|ACYT02000015.1| GENE 134 138134 - 139150 1632 338 aa, chain - ## HITS:1 COG:SPy0714_1 KEGG:ns NR:ns ## COG: SPy0714_1 COG0803 # Protein_GI_number: 15674772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Streptococcus pyogenes M1 GAS # 34 336 29 320 322 155 33.0 2e-37 MSKRILAAACAAATALALSACTSTATSGDSSPKDGKLAVMASFYPLQYLAEKIGGEHVSV TSLTPDGAEPHDLELSPKMVDSLSSADAVVYLAGFQSAVDEAIEQQAPKTVIDVSPAAEL VEAGTDANHPSEEEEEATDEAQSGETEAHDHDHEGHDHEGHDHHHDMSADPHFWLDPTRM AKAATLVGDKLAEADSAHADVYKANAKALADELNTLSDTLVTKTSSCKVKTFVTAHTAFG YLADRTGLTQVGISGLDPESSPSPARLAEIAQIAKEQGVTTIFTEALIDPKVAQTLADDL GITTAVLDPIESQTDASKDYAATMNSNIDALTKALDCQ >gi|292821499|gb|ACYT02000015.1| GENE 135 139225 - 140241 772 338 aa, chain - ## HITS:1 COG:BS_degA KEGG:ns NR:ns ## COG: BS_degA COG1609 # Protein_GI_number: 16078147 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 5 334 2 332 337 154 32.0 3e-37 MTKNRTSMADIAAHAGVSTATVSRVFNGVGQVSEDTRRRVLTAIDELGYDRPPSEHTPST PTIGVIVPELTNPIFASFAHHLQEEISRAGGIALIRTQTPGATSEFDHLASLVDHHVDGL IFVSGRHADLLSDLSPYHDVAARGIPFVTINGARQEVPAPDFSTGDSLGIRAAVSHLHEL GHTRIALLTGRTHIVPALRKAEAFTQVMGELIGDHSPIIEETFYTYEAAAAYTHALLERA VTAIITGSDLQALGAIRTISSLGLSVPDDVSVIGFDDTFLMSHLDPALTTIHQPVQSIVT SAVRALFEALNTANYAPAHADYVFSPDLIVRSSTGRVR >gi|292821499|gb|ACYT02000015.1| GENE 136 140406 - 141632 2153 408 aa, chain + ## HITS:1 COG:TM1204 KEGG:ns NR:ns ## COG: TM1204 COG2182 # Protein_GI_number: 15643960 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Thermotoga maritima # 38 405 18 390 391 175 30.0 2e-43 MRRGIAALGVFAAATALAACNNGTTSSPSSSDGATTGAVATLTIWADDTRFTQVETLAED FTTSTGVKVNVVQKSESDMDTEFTTQVPTGNGPDLIVMAHDKLGALVANGVVSPVDLGEA KSNFADVAVKAVTYNGQTYGVPYAVESVALVRNNALTKDEPKTYDDMIASGKTAGVEYPF IIQMGDKGDPYHFYGFQTSFGAPVFNTNADGEYTSELAMGGSGGTDFATWLKAQADANVF SPSITADIAKQAFLDGKAAYTVTGPWNVAAFREAGMDVSVLSIPSAGSQAAQPFVGVQMF YQSAKSANPVAAKQFFNYLATPEAQEEMQKLGGRASAMPSVAAKSDDQDIKDFAKVAESG ALAPAIPAMGSVWNFWGQTEANIVSGTETPAEGWATMVTNINNAIASK >gi|292821499|gb|ACYT02000015.1| GENE 137 141848 - 143440 2407 530 aa, chain + ## HITS:1 COG:VCA0944 KEGG:ns NR:ns ## COG: VCA0944 COG1175 # Protein_GI_number: 15601697 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Vibrio cholerae # 70 529 65 524 524 244 33.0 2e-64 MSEPAKAAEKKKEARTASHASEVTRPGFFVKLVLMMLIDALGIYGMFTAYLVKSWTVLAV LVVLLLVVNWVYFSKRTIPAKYLVPGMVFLLIYQVFVMGYTGYVSFTNYGQGHNSSKADA VASILQASEQRAEGAPSLPAAVVEDSNSLGLAVVDTATGAIRVGDSETPLHEVSGTYAAG AISAVDGYKVLTIAEILQPETQQKVSAIKVPASDNPNDGSYRSDDGSTAYLAKSRYNYDE AADTLTDTTTGVVYTANNKIGAFVDADGNQIDPGWRVFVGFDNYMNMFARGDLAGPFLKA LLWSFVFAAASVLSTFALGLILGLVFADKRIKGRKIYQSLMILPYAFPAFLATLVWKGML NKDFGFINEVLLGGTNIPWLTDGTLAKFSILGVNLWLGFPYMFLVCLGALQSLPGDVEEA AKIDGASGLRTVWSIKLPLVLQSTVPLLIASFAFNFNNFSLIYMLTGGGPNYPGLDVGQT DILISMVYKIAIESGSPNYGLASAMSIVIFIVVGVIAWLGFRQTKTLEEL >gi|292821499|gb|ACYT02000015.1| GENE 138 143440 - 144336 1353 298 aa, chain + ## HITS:1 COG:SA0209 KEGG:ns NR:ns ## COG: SA0209 COG3833 # Protein_GI_number: 15925920 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Staphylococcus aureus N315 # 21 297 9 278 279 213 42.0 3e-55 MSAATVKKNRESTLKGARWWKEVGWRHIVAILMIIYCLIPLLYVLSVSLNPGATLTGSNK LFSKVSFENFAALGSGQYSAYWSWVLNSLIVSSATAVGTVLMGAAAAYAFSRFRFKGRRT TLTGLLLVQMFPQMLAFVALFLLLLGIKDIFPVLGLDSKLGLICVYLGGALGSNTFLLYG FFNSIPRSLDEAAMIDGATHAQTFWTIIMPLVRPVLAVVGLLSFISSLGDFVIARVVLQS PQQLTLAVGMYNWAADARTAPWGIFAAGSVIAAVPVILLFQYLQKYIVSGLTAGGVKE >gi|292821499|gb|ACYT02000015.1| GENE 139 144470 - 144712 63 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAARCGSLGTGVRALPVGDQCWLLGVRSALLCVPLGLVSRENWQPRFARSVRPDAHPNPT GGVSARTVRVVVCSKCSPLG >gi|292821499|gb|ACYT02000015.1| GENE 140 144748 - 145350 252 200 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTIEPYNQLTCQAVSPHEPRTPSTPPHLRRPPNVAGNSPWSVFNTTHKRYNSNDPVYLFE RFTWELHAALLGNHNARRQRTPNRKDLKPTGNSRPKGARAPCSHTTRSNTPAGALHPLRN HAPDQGHCTRSEEVHCLRIGCSTPTHKNKRGTGKPSRSWPTSSPSIGRRAGAGRLSCAPL TLPYREPTHNATSQATAPKP >gi|292821499|gb|ACYT02000015.1| GENE 141 145387 - 145776 556 129 aa, chain + ## HITS:1 COG:BH3492 KEGG:ns NR:ns ## COG: BH3492 COG1725 # Protein_GI_number: 15616054 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 122 1 122 129 86 35.0 9e-18 MAPTFVSGIPIYVQIADDIRAQILRGTLRAGDQLTSTTEYSATYRINPATVGKAFAILVD EGLVDKRRGIGMFVAEGARRALVADGLASYVEETLNPAVEAGLALGLDIDSIANHVRAYG ADLRTKEDS >gi|292821499|gb|ACYT02000015.1| GENE 142 145773 - 146669 1122 298 aa, chain + ## HITS:1 COG:BH3493 KEGG:ns NR:ns ## COG: BH3493 COG1131 # Protein_GI_number: 15616055 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 14 287 15 276 283 113 29.0 5e-25 MITFNAINHAYPGEAEQALTDLSLEFGDSTVTALVGPNGSGKTTLMQILSGLLPPSSGGV SINGTDMRPDDLLGYSVMASSDRDFDNSSAGALVAYASLRPTWDQKLFDHYAQRFGFQMK RRKKLRKVSSGQAAILTGAVALASGAPVTVLDEIQAPLDVPTRYAFYEELLTLAADCMEG RRPRRTFLISSHMVSELENVAEDVVALKNGRLLAHESVDAFTSRICAITGNAADVEGFLI DHPGTPVISSRTLGSAREIVVDLRDRGITDREIASHSLTLSPCSFQDAFAYLIQEKDQ >gi|292821499|gb|ACYT02000015.1| GENE 143 146666 - 147388 724 240 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189557|ref|ZP_06608277.1| ## NR: gi|293189557|ref|ZP_06608277.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 240 1 240 240 420 100.0 1e-116 MITANPDLIKSSPSPLRIGLVGSRFTVVLYLLVVCFQFLVNFTVNGIVYLSVPDVTGQVD QAATNSAFVTGVFLFVCGVVSATVNMRASALSGGSRPVLTAASYVHSIVIIGLGSLIWWL LIAIHPLLFVMGRESFPLGVDSWIFVLFAWVACDGAGRFIGGLARCIGSTWKRVFVLMGA IPLGICAIGAPVTWLVLTLVHKSGYLPPMHPAFYLLGLISLTVIASGWPLTASGHIRRVG >gi|292821499|gb|ACYT02000015.1| GENE 144 147609 - 148997 2367 462 aa, chain + ## HITS:1 COG:Cgl2226 KEGG:ns NR:ns ## COG: Cgl2226 COG0423 # Protein_GI_number: 19553476 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Corynebacterium glutamicum # 6 462 5 461 461 711 72.0 0 MAKGPSRLDNVISLAKRRGFVFPCGDIYGGTRSAWDYGPLGVELKENIKRAWWNAMVRRR ADVVGLDSSVILPREVWVASGHVKAFTDPLIECLNCHKRARQDQLIEELAEKKGVEESTL SNDDIACPNCGVRGQWTEPRAFSGLLKTYLGPVDDEAGLHYLRPETAQGIFINYANVMNA ARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFFCEPGTDEEWHQYWIDYRKAW YVNLGIDPENLREYEHPQEKLSHYSKRTVDLEYRFGFQGSEWGELEGIANRTDYDLTVHS EASGAKLDYFDPNTKERWTPYVIEPSAGLTRSLMAFLIEAYHEDEAPNAKGGVDKRVVLK LDPRLAPVKAAVLPLSRKPELTGPAQELADELRGIWNVDYDDAGAVGRRYRRQDEIGTPF CITYDFDSIEDHAVTIRERDTMEQVRIPLDKVKSYLIERLGC >gi|292821499|gb|ACYT02000015.1| GENE 145 149038 - 150315 1411 425 aa, chain + ## HITS:1 COG:Cgl2516 KEGG:ns NR:ns ## COG: Cgl2516 COG0042 # Protein_GI_number: 19553766 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Corynebacterium glutamicum # 71 408 14 347 363 326 51.0 4e-89 MGPLRLWTPVVLAPMAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSP KAPGESSNEPRHVTIPRVDAPAGLYVTEMVTSRALVEENERTLEMVRPDPAERVRSLQLY GVNPAVMAKAATMLVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRA CDEAGERAGREIPVTVKIRIGIDSEHETATDAALSAQKLGAAALTLHARTQNQHYAGHAH WDEIARLKDLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYH GGSIPPGPSLAEVVSVIECHAAWCVVDQGDEGRALREMRKHIGWYLRGFAVGGPQRHALS MVSTLQELHERLADLDLNQAFPPAARGPRGRAGGEKTPHLPDGWLDHPSLTQSERDRLHL AEIGY >gi|292821499|gb|ACYT02000015.1| GENE 146 150327 - 151151 758 274 aa, chain + ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 23 269 7 248 252 113 35.0 4e-25 MPYSSAPDPDPAPGLVTIGRAAKKATLGGRTQVIVPVSGDAAALSGQVEALALCRADIVE WRADTFLSSLVGSHFVAASDVEEDLVRMARYVADSSPLPVLATIRTSVEGGEAYLDDEEY CALVRRLASFAGGVDVEISRDGSSALIEEAHEAGAIVVASFHDCEATPGDEQLAEVLAAM NYAGADVLKFACMATNATDAARVLAAQAWAREAYDRPVIGISMGEHGAPTRLIGSALGSA ATFATLPGWEGSAPGQFTVEQVRTVLDIVEVGEA >gi|292821499|gb|ACYT02000015.1| GENE 147 151361 - 151864 432 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189561|ref|ZP_06608281.1| ## NR: gi|293189561|ref|ZP_06608281.1| putative DNA replication and repair protein RecF [Actinomyces odontolyticus F0309] # 1 167 1 167 167 246 100.0 4e-64 MPDVAFDSERHAQARHDVHDSGQELAASAVSANVLAMAQMFGHWTTENAAQDMGKTVRSF LTAFSSQMAHEAQFVGDMDVKVNQAVADFEGTEEDARAAMAAVSTALLSLNQGESAHKVY SQETIDKLTSENKPKDDAVQGDEHESEQQETSNTVGQTPSHDEPNSY >gi|292821499|gb|ACYT02000015.1| GENE 148 151824 - 153410 1254 528 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189562|ref|ZP_06608282.1| ## NR: gi|293189562|ref|ZP_06608282.1| PGRS subfamily gly rich protein [Actinomyces odontolyticus F0309] # 29 528 1 500 500 858 100.0 0 MGKHRLTMSPIATETYWIKEIIELVSSPMYDRLMQFANSAPENEKLYGWDDEHSTVVKAI RKAQEKIEHFKDHQGFTGQAGDAMSAEAVRAFNRFNGQANFYLTGMSYYVEARRAIMLAA EEARQLSPTLLDPMTEAMRDVATVTIPVASNFGLPGQFVNSLVVTGAAYVNAVEAQANAQ REAKSTEIIEHLESTMNNLSSKLQGHTDTGPNLSDRGDWTPIPEIPKDSADALEKGHITI SPYEGGAYGRSRSDAFGNADLRGSDSGLYPGGYDNGEGINQRVMQSPRVPSRYFPEGEVG SRANPITDPQDLMDMDLLHTRVNGDRHANGVIGGHTPAPPIDRDHPLWGLNASRAAESQT AGRLGGIGVMGAGVLGLRGAARMGSVSMGAMGRMGGVGAGSFGTSGAGALGRGSAVAGSS ALRAGTYSGTGMGTYTPPGSGQSAGAAAGQGAAAGQRGGFMGASGAGAGGAKEDKKQRRR KYEAFRIEDEDDDALPRGYVNPLSQTYGTDKDIAPARRRDDGWDPNQW >gi|292821499|gb|ACYT02000015.1| GENE 149 153404 - 154612 618 402 aa, chain + ## HITS:1 COG:BS_aprE KEGG:ns NR:ns ## COG: BS_aprE COG1404 # Protein_GI_number: 16078094 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 62 321 121 375 381 87 28.0 5e-17 MVTVRQAVLTNALRKGSRRAAVASGCVLALAGSALAATPTHADDRQITAADQAYFSYYHL DAARAKGYTGKGVTVALIDGKVDTSVPELAGANIIDKTPCTVNSSSEHTNHGTGIASLLV SRDYGVVPDATLLSYQSHDSSSTVEHDCQLAAKIPLIGLPSLINHAINDGASIISFSASS REHENNLKWAIARAMSQGVIITAAAGNAGKDENDTSLSWWSGVVGVSAIDDKGKFASYSS WGQGVTTAAVGGPFVERLISDGKIGTTQGTSYSAPIVAGALAQARAKWPNATANQLLQLL INTATLPAEGQNIYSGYGAINPGKMLNTDPSQYPDENPLADKGGGTSPTPAEVQQYADGL VDPTEIAYDNSYAYRGLDESQITNKDNTYPIHLGTSPRFHRK >gi|292821499|gb|ACYT02000015.1| GENE 150 154759 - 156804 3039 681 aa, chain - ## HITS:1 COG:Cgl1324_2 KEGG:ns NR:ns ## COG: Cgl1324_2 COG1263 # Protein_GI_number: 19552574 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Corynebacterium glutamicum # 112 486 1 360 415 345 51.0 1e-94 MSNTAQEILDAVGGPGNITHFTHCATRLRFELNDASVVDKDRVEAIDGVLGAVPQSGDRY QIVIGGAVQSVFNEINNLPSMKSGAAASNDDVKAAARAKARGKNAIVDAFFEYLSDSFRP LLPVLLGASLILAFLAVLEAFSVVDTHADVIPAWLGYVNSMWRAVFYFLPAMVAYNASKK LDIDPWVGTAVILSLLTPNFIGLSNASSFTETTCTTTALGSEQCVTQIGSLPLQLSDYGG QVFVPLLMVPILALLYKGLKRIIPSNVQMVFVPFISFIIMMPLTAFLIGPLSIWIGNGLG GGLAWLNGHAPVLFAIIIPIIYPFLVPLGLHWPLNALQLANIAATGSDFIQGPMGAWNFA CFGATAGVLFLSIRDRDTDMRQTASGALAAGLFGGISEPSLYGIHLRFKRIYPLMLTGCV VGGLVIGIGGGAITHTFVFTSLLTIPVFSPMSVYGLGIAAAFFTAFLMVVFFDYRTKEQK AEVRAKKSLLEDDAPVVAPSAAAAPAAASSAAPVAEAAPEFSDEAKADLTLTSPMAGTTV ALSEVADEAFAAGALGPGIAVSPAAGAVVVAPCDGKVSVAFPTGHAYGIKSASGVQVLIH IGMDTVKLEGKGFTPRVAKGDVVKRGDVLAEVDWDVIREAGYDTITPMVVTNKKKFGEIT PAAPGPVGISDTVVTVSPKEA >gi|292821499|gb|ACYT02000015.1| GENE 151 157110 - 158279 1191 389 aa, chain + ## HITS:1 COG:all5196 KEGG:ns NR:ns ## COG: all5196 COG4671 # Protein_GI_number: 17232688 # Func_class: R General function prediction only # Function: Predicted glycosyl transferase # Organism: Nostoc sp. PCC 7120 # 7 351 28 381 423 191 35.0 2e-48 MTPPLSVLLYSHDSQGLGHVKRNLALAHHIAARIAGEAVRGLIVSGLAHNPLFTLPEGFD WLALPGIAKKNGAYVPRRLSGSLSDTLALRSALLESALVAFSPDLVVVDRHPLGVGRELE APLRALKRSRPQARVVLGLRDILDEPTVAAREWADLGGASILDGLIDQVWIFGDPSIHDA TSTGEVPAALASRAIFTGYLADGRTDVDPHPGPIKRPFVLTTVGGGSDGGRIVEAAAGAR MPEGHDHLVVAGPQLDDASMERARSLAGPTTTVVRTCSGLAHRIREAAAVISMGGYNTVC EILAADTPALIVPREVPRLEQTIRARALAGAHLIDTLSQADATPEALSRWLNGAVTTRTD RSRIARGGLAAAAHAAMTLIAPANDGDLQ >gi|292821499|gb|ACYT02000015.1| GENE 152 158276 - 159484 1424 402 aa, chain + ## HITS:1 COG:all5195 KEGG:ns NR:ns ## COG: all5195 COG0438 # Protein_GI_number: 17232687 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 4 395 3 403 418 277 40.0 2e-74 MTRIGYVLKVYPRFSETFVVTEMLARQNLGQDQRIYALRPTTDTRFHPEIAYVEAPVSWV PRPRKASEMWNILTSGLADEEMRTRFAALMPAIASLPADDVAQGIALALAAREDGITHLH AHFASLAGRTAWIASSLSGIPFTVTTHAKDIYHESVDVDLLRRICADAAQVIAISQYNMD YLERVLEGTGARLVLQRNALELARFSYRDPEPATGTLRVVAVGRLVEKKGFADLIDALAI LRDQGVAVDASIIGEGDLKDDLARRIEERGLTASCRLCGARTQSEVREALEGADVFVAPC IPGSDGNIDGLPTVILESMAVGTPVVATVVTAIPEVIINGRSGVLLPPGSPESIAQALAD IASGATPVVELARGARALIEEHYDSRRQASALARLESDEETL >gi|292821499|gb|ACYT02000015.1| GENE 153 159484 - 159703 296 73 aa, chain + ## HITS:1 COG:all5194 KEGG:ns NR:ns ## COG: all5194 COG0438 # Protein_GI_number: 17232686 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 62 1 62 386 75 56.0 3e-14 MRIAYICADPGIPVFGTKGASVHIQDVVRELVRRGHDVEIHAVRMGDRVPADLADVPTVE YPLDADGAGDRER Prediction of potential genes in microbial genomes Time: Tue May 17 06:10:33 2011 Seq name: gi|292821469|gb|ACYT02000016.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.23, whole genome shotgun sequence Length of sequence - 31350 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 12, operones - 6 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 + CDS 66 - 902 901 ## COG0438 Glycosyltransferase 2 1 Op 2 . + CDS 904 - 2718 234 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 3 1 Op 3 . + CDS 2715 - 3845 1084 ## gi|293189572|ref|ZP_06608291.1| phosphotransferase enzyme family protein 4 1 Op 4 . + CDS 3836 - 4816 871 ## Bfae_02030 putative homoserine kinase type II (protein kinase fold) 5 1 Op 5 . + CDS 4849 - 6168 1746 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 6 1 Op 6 40/0.000 + CDS 6222 - 7664 1321 ## COG0642 Signal transduction histidine kinase 7 1 Op 7 . + CDS 7661 - 8320 781 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 8277 - 8338 4.3 8 2 Tu 1 . - CDS 8339 - 8695 412 ## gi|293189577|ref|ZP_06608296.1| conserved hypothetical protein 9 3 Op 1 3/0.000 + CDS 8911 - 10200 1573 ## COG0232 dGTP triphosphohydrolase 10 3 Op 2 . + CDS 10247 - 12217 2234 ## COG0358 DNA primase (bacterial type) 11 3 Op 3 . + CDS 12221 - 12700 673 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 12716 - 12761 11.1 12 4 Tu 1 . + CDS 12884 - 13672 1050 ## SGO_1501 hypothetical protein 13 5 Tu 1 . - CDS 13736 - 14236 450 ## gi|293189583|ref|ZP_06608302.1| hypothetical protein HMPREF0970_00617 + Prom 14542 - 14601 1.6 14 6 Tu 1 . + CDS 14634 - 15782 1723 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 15801 - 15846 12.6 + Prom 16206 - 16265 3.9 15 7 Op 1 35/0.000 + CDS 16298 - 17899 228 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 16 7 Op 2 . + CDS 17896 - 19659 2300 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 19673 - 19716 12.0 17 8 Tu 1 . + CDS 19740 - 20957 1526 ## COG1482 Phosphomannose isomerase + Term 21078 - 21125 3.2 - Term 21066 - 21113 7.6 18 9 Op 1 . - CDS 21173 - 21865 644 ## COG0518 GMP synthase - Glutamine amidotransferase domain 19 9 Op 2 . - CDS 21899 - 22972 309 ## Lxx17710 hypothetical protein 20 9 Op 3 . - CDS 22969 - 23604 419 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 21 9 Op 4 . - CDS 23589 - 24632 811 ## Cfla_0102 hypothetical protein 22 9 Op 5 . - CDS 24657 - 25280 589 ## Lxx17750 hypothetical protein - Term 25539 - 25584 17.4 23 10 Tu 1 . - CDS 25605 - 26798 1460 ## COG0620 Methionine synthase II (cobalamin-independent) 24 11 Op 1 . + CDS 27121 - 28968 2765 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 25 11 Op 2 . + CDS 28992 - 30041 1324 ## COG0095 Lipoate-protein ligase A - Term 29924 - 29956 0.3 26 12 Op 1 . - CDS 30117 - 30737 796 ## COG2095 Multiple antibiotic transporter 27 12 Op 2 . - CDS 30785 - 31348 556 ## COG0325 Predicted enzyme with a TIM-barrel fold Predicted protein(s) >gi|292821469|gb|ACYT02000016.1| GENE 1 66 - 902 901 278 aa, chain + ## HITS:1 COG:all5194 KEGG:ns NR:ns ## COG: all5194 COG0438 # Protein_GI_number: 17232686 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 275 96 376 386 192 42.0 6e-49 MWERYSLFSTALASLAKGSGVRGILEVNAPLIEEQRRHRRLDDEAGARSALVEQSGAARA IICVSDPVRAWVEEMTGTERAHTVPNGVDTNRITPVTEEAGRVVVTFVGTLKPWHGVEHL IGARALASSPWDLRIIGDGPQREALEEAARAAGVDVDFRGAVAPHEVPSHLEGSAIAVAP YPAPADEADHYFSPLKVYEYMAAGLPVVASALGQIPVALLGCGVLVPPSDTAVLARAIDA LAQDPERRTELGAQARLAAEERHSWEGVVGRVLELVEA >gi|292821469|gb|ACYT02000016.1| GENE 2 904 - 2718 234 604 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 353 577 126 351 398 94 32 6e-19 MAPISKKNNLGALSRTLRLVGPDVRPHRGLIAGGIVALLLDVVFRVMEPWPMKIVIDSVV EVALHRGEGPWSAAPMIVACAGLLVVIVGLRAASNYMATVCFALVGSRVAQSLRARVFRH VQGLSQQFHARNRSADTVQRIVGDVNRLQEVAITAGLPLLANTATLLVMVIVMVVLDPLL AVVVVVAVALFLFVSRGSSQRITAAARRTRKGEGQLANTAQESLASIPVVQAYGLEDYIA GRFGGANGKAVRQGVKSLRLAARLERSTDLLVGIATAIVLVGGGLRVLSGAMSVGDLVLF TSYLRTAMKPLRDMAKYTGRISRAGASGERVADLMEVRQDIVSAPGALHPAVIGGNLEFD RVVTEYDGIEILHSLSLSVREGERVAIIGPSGSGKSTLVSLAVRAQDPVSGRVLMGGYPL TDLTLAAVRSNVTLLHQDAVLFATTIRENIRLGREGATDEEIVAAAKAANAHDFIMEMPG GYDAEVGERGGTLSGGQRQRIAIARALLRDTPIIILDEATTGLDPESTGLVLDAIDGLVL GRTALAITHDPPVALRSSRVVWIEDGRVLLDGTPAQLLEESEAFREWAASATSASASTRG GDVR >gi|292821469|gb|ACYT02000016.1| GENE 3 2715 - 3845 1084 376 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189572|ref|ZP_06608291.1| ## NR: gi|293189572|ref|ZP_06608291.1| phosphotransferase enzyme family protein [Actinomyces odontolyticus F0309] # 1 376 1 376 376 655 100.0 0 MSANLSDALSLFLDSLRLSEAVDASRVATRVRIKPGVSISASLADADGLPVGWARLLWPD AVAKGEKSAAKAQRRNVPTSSRTLEDGLWLQWGDIVSDPDLMVHIGRAQASGIVEPRTWQ VLRHNPLRRLVARSGGVVVRIQATEDAHVRGLDAFLSAVVPVPERLDEGSDPNVSVLADA GGFDLSQSASTAGQVHAWHEEAGELFARLHAAVPSAHLAQRMGAPTASTRHILAVHARII SELNAVLGARIEALADTAPEPEEAPLVPIHADATPDQVLVSAEGTVLLTDFDRARMGAAS LDVASYMVSADPECAEAFARGYERAGGRLPAGTELSAARIHARALKLADPLREARPDWAQ HIDHTLTLIEEESACL >gi|292821469|gb|ACYT02000016.1| GENE 4 3836 - 4816 871 326 aa, chain + ## HITS:1 COG:no KEGG:Bfae_02030 NR:ns ## KEGG: Bfae_02030 # Name: not_defined # Def: putative homoserine kinase type II (protein kinase fold) # Organism: B.faecium # Pathway: not_defined # 13 305 497 825 878 84 34.0 8e-15 MSLITDVRSIEGIKRAWPARAGIAVELVDRRGRLRAGLATDAGVAMSLYACDPVLGTIPV GEGELVVHRHARRAVVVADRFVTKHVRKGGERIACNTAVAGRIYRSWGLAVADVTDWSST ALTYTRLPGRSLGDLGDEGLDGWKALARAWQPTRDAALEPHTGAHEARILARWAEQARIF DTIGEDPRVTEAVLDVSARLIEDIDTTHVVSHADLHDGQLLWDGTSLGVIDLDGARMAEP ALDLMNLRAHAELHHLRGHLSAHSLDVVIGHIDDVASRMPTTRARLEAYLQASRLRLIFV YSFRPGASSWLGEWMDHALSAHSSTH >gi|292821469|gb|ACYT02000016.1| GENE 5 4849 - 6168 1746 439 aa, chain + ## HITS:1 COG:MT0337 KEGG:ns NR:ns ## COG: MT0337 COG1004 # Protein_GI_number: 15839709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 1 432 1 431 443 410 52.0 1e-114 MKMTVIGCGYLGAVHAVCMASLGHEVVGIDVDQAKVRALSAGKAPFHEPGLEEMIAAETA SGRLRFTAEPTAQDLSGAGIHFITVGTPQSDEGGSADLSHLMGAVSMLTELLDPAERTVV VGKSTVPVGTAHIVEEKLAGTAAALAWNPEFLREGYAVEDTLRPTRLVYGLSANADSAFR GRNALDEAYRPIIEAGCPVIVDSFSTAELVKVAANSFLATKISFINAMAEICDVTGADVT MLAQALGHDERIGRRALGAGIGFGGGCLPKDIRAFVARAEELNKGESVAFLKEVDAINTR GRTRAVAAAEAALGGSVTGKNITVLGASFKPDTDDVRDSPALDVASRLHERGANVRVTDP IALTNAAAHKPHLTMVEDMHAALTDADLVVLATEWSQFVNMDPAAIGPLVRSRTIVDGRN ALDREAWNAAGWTHVGIGR >gi|292821469|gb|ACYT02000016.1| GENE 6 6222 - 7664 1321 480 aa, chain + ## HITS:1 COG:alr5189 KEGG:ns NR:ns ## COG: alr5189 COG0642 # Protein_GI_number: 17232681 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 110 472 165 528 537 218 35.0 1e-56 MSKQNTRAGVSVSIRTRIIAAVILVAGAALTVSGVLVFILQQRALDARAVDRLHQSKIAL QDLVEGGTNPETGVALTDPSEIVRLHLARTYAGTYAGEVGFVDGTLYWLPSQEPRLHIED DAELVAYVAPLTTGTDTIITTHTTTTMTYRLIVVPIAGPSSNAALVHAIDMRGYGESTHS AMVLYVVAALGTLVLVVPFAWFSVTRLLRPIGELRRATDSIGESDLTTRVPVRGNDDLSG LAGAVNRMLDRVETAVVARRELLDDVSHELRTPITVVRGHMELLDPDDHDDVVETRALVI DEIDRMGTLVGDLLELARASDTVNPASTDLAALTEAVLDKARALGDRQWTLGEAAQVTCC LDPTRITQAWLQLAQNAVQYSADGTLIAIGSGTDSQWARLWVRDRGVGIAPDDIECVRQR FVRGTAGTESVAGSGLGLNIVESIARAHGGHLDIESTPGVGSTFTLVIPLRPCGASGETS >gi|292821469|gb|ACYT02000016.1| GENE 7 7661 - 8320 781 219 aa, chain + ## HITS:1 COG:alr5188 KEGG:ns NR:ns ## COG: alr5188 COG0745 # Protein_GI_number: 17232680 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 1 218 1 220 222 241 57.0 8e-64 MTTILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGLPDIDG FEVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREE TPTSSAMTLTRGSLVLDLKTRRACVGEEWVDLSAREFTLLETFMRNPGQVLSREQLLSAV WGIDFDGASNVVDVYLSYLRQKIGKDYFETVRGMGYRLL >gi|292821469|gb|ACYT02000016.1| GENE 8 8339 - 8695 412 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189577|ref|ZP_06608296.1| ## NR: gi|293189577|ref|ZP_06608296.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 5 102 1 98 114 113 100.0 5e-24 MSERMRVIWAIGLIAAVGCGAFFGLRALAAGGQQTTMESGLSVPAQSDGAGPQSAPVVAA TEEPTPTPEPAPEDPAPAPTPAPVATNPYYVAPTSPQRAVPNDDDDDDDDDHDDDTDD >gi|292821469|gb|ACYT02000016.1| GENE 9 8911 - 10200 1573 429 aa, chain + ## HITS:1 COG:ML0831 KEGG:ns NR:ns ## COG: ML0831 COG0232 # Protein_GI_number: 15827365 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Mycobacterium leprae # 14 411 12 416 429 337 47.0 4e-92 MAIPGVDGGDARRPYASADSERWVPEDHKSSERTEFERDRARILHSSALRRLGEKTQVLG PISDDFVRTRLTHSLEVAQVGRELGKELGADPDVVDAACLSHDLGHPPFGHNGERALDAA AASIGGFEGNAQTLRVVTRLEPKVIGAGGVPAGLNLTRATLDAICKYPWVKAGGPDLAKS TRKYSVYPDDAPVFAWMRQGAPAGRRCLEAQIMDLSDDIAYSVHDVEDAVATRKLDPADL FDDAHCSAVVASTLDWYGPSVARSDLEEALERIVSMPVWLRSFDGSYASLAHLKDATSEL IGRFCSATVAATRETFGHEPLGRYRADLVVPREVRAEIQILKGMAVHYVMSPRETEPVYY QQRTLLADLVDALYEAGADALEPVFAAQWRAASDDGVRLRAVIDQVASLTDVSASAWHAR WCGMLSSQL >gi|292821469|gb|ACYT02000016.1| GENE 10 10247 - 12217 2234 656 aa, chain + ## HITS:1 COG:Cgl2216 KEGG:ns NR:ns ## COG: Cgl2216 COG0358 # Protein_GI_number: 19553466 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Corynebacterium glutamicum # 3 655 6 629 633 521 43.0 1e-147 MAGLIRKDDIEAVRNAVKIDEIIGEHVALRPAGIGSLKGLCPFHDERTPSFNVRPHLGMF HCFGCGESGDVISFVQKIDHLPFTEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD AHRVAEEFYQQQLASPEAHKGRTFLAERGFTQAMCAHFGVGYAPASWDSLTRHLRSKGFT DQEIQISGLGSQGSRGVYDRFRGRLVWPIRDITGATVGFGARRLDDSDKESPKYLNTPET PIYKKSQLLYGLDLAKKTIATEHKVVIVEGYTDVMAAHVAGVTNAVATCGTAFGSEHVKI IRRLLGDHADPAAGVLLSTGRAHGSEVIFTFDGDSAGQKAALRAYGEDQNFAAQTFVAVA PGGQDPCDLRLSQGDQAIVDLVNSRIPLFEFAIRSVLSQMDLRSAEGRVQGLRASAGIVA HIKDRALRAEYTRQLAGWLGMDIPTVEQAIRAAGRVEVLSHEARPGEIEMAGAGRPVPAS ERRGPEDPVSRIERQALEAVLQHPLYAVGSGFEELDGQSFTVPTHRAVHDAIRAVGGLDA FTQMMRQAEAHFGPGENATLAASRRFVQVVLETAGEFIGPAVTQLAVAPLPVAGEADVRS YCRGVVAAMVRMDLTRKLGEARAALSRLNEDDPTYSEMFRELMRLEQRRQNYTERN >gi|292821469|gb|ACYT02000016.1| GENE 11 12221 - 12700 673 159 aa, chain + ## HITS:1 COG:SPy1642 KEGG:ns NR:ns ## COG: SPy1642 COG1854 # Protein_GI_number: 15675515 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pyogenes M1 GAS # 4 154 7 157 160 229 68.0 1e-60 MAEVESFTLDHTAVKAPYVRLINVEAGPKGDQISNFDVRLLQPNAGEIPTSGLHTIEHLL ASLLRDRIDGVIDCSPFGCRTGFHLIMWGTPSVREVTQALASSLHAIAEDVTWEDVPGTD AFSCGNYRDHSLFSAREWSRTILEQGFSLDPFERIHLVH >gi|292821469|gb|ACYT02000016.1| GENE 12 12884 - 13672 1050 262 aa, chain + ## HITS:1 COG:no KEGG:SGO_1501 NR:ns ## KEGG: SGO_1501 # Name: not_defined # Def: hypothetical protein # Organism: S.gordonii # Pathway: not_defined # 19 258 6 249 252 185 44.0 1e-45 MSAPALTSPARIEPRSRLGVNQYWIKLAMAALMVLDHLPHVPGLVPVMWTDIFHVVTRCV AVWFAYGAVEGVLYTSSMRKYLARLWGASLIMAAGNYALGLLLATRDVHMYDNNIFLTLA VGTSLLALVKRWSGTKWHKWAIGGVSVLSLVCAVLPIEGGLPLLPFMVITYALYSRVVWR DLAYLALAAAMFALVWQPYDTWQATVSMLAQNSDFMLILVIPILHLYNGEHGPHTRFSKY FFYVFYPAHLWLLALVAYVQAG >gi|292821469|gb|ACYT02000016.1| GENE 13 13736 - 14236 450 166 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189583|ref|ZP_06608302.1| ## NR: gi|293189583|ref|ZP_06608302.1| hypothetical protein HMPREF0970_00617 [Actinomyces odontolyticus F0309] # 1 166 1 166 166 313 100.0 3e-84 MTTLPKALALCLPARERRSPSLELHDGRWLAAAKSGLYVFGAGSASDEKAQKSYEVFPWY DVARAQWEAEAESFTLEWVDPTRPSLVGRGQGDPSDFMRHTSEYVNRSIVVHAQVETEGR TTVTAWVRRGPDGLFSILTANGPLDAAGQRQADALEARVRDAVGLD >gi|292821469|gb|ACYT02000016.1| GENE 14 14634 - 15782 1723 382 aa, chain + ## HITS:1 COG:XF1999 KEGG:ns NR:ns ## COG: XF1999 COG0115 # Protein_GI_number: 15838593 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Xylella fastidiosa 9a5c # 29 377 5 356 362 359 51.0 6e-99 MASTQHTPTELEAAGDLVLPAADELAGRFPLTPNAHPATPEEHNEIMSTLAFGKKFTDHM AHMRWTREGGWDDRGVIPYGPLELTPGASVFHYCQSVFEGIKAYKREDGSVWTFRPGYNA ARLNHSARRLALPEMSREDFVASLVDYVRADVKWVPEVDGSSLYLRPFMFASEEFVGVHP AGVVDYYVIGSPSGPYFKGGLSGVAIWVEREYHRAGPGGTGSAKAGGNYAASLLPQIQAE AKGFSQVCFLDTYEGKYLEELGGMNMFVVMADGTIRTPELTGVILEGGTRSAILRMLRDE GVAVREEKIALSEVVDGIRSGAVTEVFACGTAAVVTPITRLAGDDFDVEIEVGDKTREIH KRVTDIQWGRAEDPYGWTYRLV >gi|292821469|gb|ACYT02000016.1| GENE 15 16298 - 17899 228 533 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 325 531 135 341 398 92 33 3e-18 MKRAIVVVCSWAASLCLAAAYLAIGWGIDDVVGHNAWSTWWIGVLGALGSGVFAWVVSAL GAAQMNQMEPALRHSMIRQVFALGPSQRTNERAGRVVNSATDGVERVAAYKGIFLAPMIA SLTIPILVVIVVALAIDPAAGGFLAIAIPLVPICVMGFRKAFKPVSSRYRHASRQLAAKE LDAIQGLGDLALMNAGKDMGKRLAEAAEEVRSKVMSYLAGNQLILLVIDSVFSLGIITGA IALALIRYQQGAISVGEGISLVLLSSIMLDPLDRIGQFFYIGMGGIAANKEITKFIKQTP PVVDAKGVKAPAIPPQRGEIRLSGVSFSYTKDTPVLQGVNLTLTQGEHVALAGPSGAGKS TISALLQGFLRPTRGRVSLNGVDLATVPLSWVRAQTAVVEQSTYLFSGTLRDNLLLASPA ATDDQLIEALRAAHLGEFVDTLPGGLDARVGARGLAVSGGEAQRIAIARAFLKNASIMIL DEPTAHVDLASEREILASLETVCAGRTTLTISHRDATIKGSDRVATLQEGTIR >gi|292821469|gb|ACYT02000016.1| GENE 16 17896 - 19659 2300 587 aa, chain + ## HITS:1 COG:MA2473 KEGG:ns NR:ns ## COG: MA2473 COG1132 # Protein_GI_number: 20091304 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Methanosarcina acetivorans str.C2A # 27 582 40 589 600 289 33.0 9e-78 MTRRQLSLRLLSITRRVLPPLAASIAARIVFLMIGIALFALGGWAVAGLASGESAWSIAL VIGCAIGLSLLKGLARYLEQFAGHFVAFHSLAMLRNYFYDQLEPQAPAGTDRLDSGDIMN RVTKDIDRVEVFFAHTLAPVTTAIIVPILSVVWMGSAVSWTLAAVLAPFLLIVGAVIPFL GSGSTARAARELREARGAIAAHVTDSVQGVREVLAFRAEERREAEMSAIEKRISSGLGTQ GRWIALRRGLNQAAVALGIVTVAMVAGSNVLAETLTLPQAGLALGIAMGSFGPVLAVEEF AADLDQAFASAARVFAFTDRAPVVADPADPKPLTPGDIEFTDITFAYPTDEDAPAPAPTV LDGVSIHIPAGKRTAIVGASGSGKSTLASLLTRTWDPASGAVTIGGTNVAEVSLRDLRAT VSSASQRPYLFNDTLRANLLLAAPDASEADLERVLEAVDLTDWLATEKDGLDTVVGDMGE RLSGGQRQRLALARALLRDAPIYVFDEATSQVDPATEARVREGIARVAKGRTIVEIAHRI SAVRDADQIIVMDAGRVVETGTYAELHARGGALAALEARETTDQPSA >gi|292821469|gb|ACYT02000016.1| GENE 17 19740 - 20957 1526 405 aa, chain + ## HITS:1 COG:Cgl0726 KEGG:ns NR:ns ## COG: Cgl0726 COG1482 # Protein_GI_number: 19551976 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Corynebacterium glutamicum # 1 386 1 375 394 233 40.0 6e-61 MERLIGWTKADAWGSTNAIPEFLGAAAGDDPVSEVWFGAHPDGPTLLTGGQTLAEYIGED PKRALGGGLLYAFGPTLPYLAKIIAPAQTLSLQVHPTKEIAREGYLREEVLGIERTDTRR VYRDMNHKPEMIYALTEFSALVGFRVPRKARQLLVGLEGDLADRLRHRLKLSTVRGGLRS LATWLFDEDSPATSERVEEFVAACRSRLASGTSPSPRTDELVSVLGEKHPGDPGIIVAFL MKPVSLRPGEAVYIPPRQIHAYQSGLGIEVMASSDNVVRAGLTGKYVDSAQLVEIAEFSA LPPVRVAPEHPSATTDRFLAPAQEFELSVTTLAPGKHTSRVDEVAVPGEGPRIVIATSGS VSLHVSEEQGGDSVELSRGQAVFISAAERRVWAYGTGSFVQVAAP >gi|292821469|gb|ACYT02000016.1| GENE 18 21173 - 21865 644 230 aa, chain - ## HITS:1 COG:SSO1857 KEGG:ns NR:ns ## COG: SSO1857 COG0518 # Protein_GI_number: 15898650 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Sulfolobus solfataricus # 1 192 1 174 209 90 32.0 2e-18 MSILVIQNDPIVPVGQLSAFLGGHEVVRAWEEPQRLQDLVAAPLPGALILLGGRATAYDD EAWPWLEAERELTRRCVSTNVRVLGICLGAQLIAATFGGRISIADPSGPERGVIPLVWGT NDQAGGGGAVPLRMALASTHTVFADHGDAIVELPHGAREWARSDKYTQIFSYGTALGVQF HPEVTREIATAWAANNEDVDTEDIVAGYDAHEGDLASTCKTLADWVSGVF >gi|292821469|gb|ACYT02000016.1| GENE 19 21899 - 22972 309 357 aa, chain - ## HITS:1 COG:no KEGG:Lxx17710 NR:ns ## KEGG: Lxx17710 # Name: not_defined # Def: hypothetical protein # Organism: L.xyli # Pathway: not_defined # 46 357 2 315 315 174 38.0 4e-42 MSTLSWRALLSEAWRDCLSGTARVGMLTILAAALVGGVICADAFSLRSVSVEAASFRVHL GSVRVLQAQGGIDGAACDALSRIPGVRAGALRSVESGLSPLALPASSLPLYEVTPGTVSL LGTTTADPTGILLPEQVAEELGTTQGALLPLAHEQAEVAGTYPWDENDGRRPGYAYAALA PVPTTGTFDECWYESWPHSDDVDALVRSTLVGSDDQNTQVLAMNPTRGTAFDAAGQLRHR PTWWAWIAASTIGAALGAAATWWRRLEIASALHAGLRRSDTTVLQLFEAVAWVGGAFVLS SGICLTILSGAPPSDRSDLMRLVATEGICAASWTLIGVVIASTTIRERQLFVFFKGR >gi|292821469|gb|ACYT02000016.1| GENE 20 22969 - 23604 419 211 aa, chain - ## HITS:1 COG:AF1469 KEGG:ns NR:ns ## COG: AF1469 COG1136 # Protein_GI_number: 11499064 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Archaeoglobus fulgidus # 22 199 26 214 226 133 40.0 2e-31 MSVELDNVGHMFAATPWLFRHLSARCEDGALTAVIGPSGSGKSTLLSLIAGWDAPTEGTI TIPRPASPQSPRIAWVFQNPFGVRARSAIDHVALPLLARGMSRAQADVEANRLLDAFNLA HLATRPFRDLSGGEAQRVLLARGLACAPTLLLVDEPTAQLDQSTARDIASTLGSLREDGV SVVIATHDPSIRAQCDAIIDLAHFQDEEEQQ >gi|292821469|gb|ACYT02000016.1| GENE 21 23589 - 24632 811 347 aa, chain - ## HITS:1 COG:no KEGG:Cfla_0102 NR:ns ## KEGG: Cfla_0102 # Name: not_defined # Def: hypothetical protein # Organism: C.flavigena # Pathway: not_defined # 20 328 19 325 349 149 39.0 1e-34 MTTSRRWLALTAFVALIAGAGGVSAGILIASPPTPASLASSSAPSTVPVTTREFTDTRSL TLTIPPASPHELTSPTAGRITALQAAPGTPITSGSIPCEIDGLPLLALALSTPLYQDVVD GATGPDIGALNAELARLGYAAPAESQRVTVATRAALASAMGVNDGAGGVPSRIEASRVLW IPATTVTPSSVPVRLGDSVDTQTVLLALEDSRDALRLSVPPDAYPADHVITLGDTDYPVP SDGVITDPTLTAAILSSREYASFVRSAPSGDGPVQLPVSWKLASPITVTVVPPASVIGDA TNACVFASGTPIPISIVSSQLGRTYVLPTTPLSAVDTAVEGRSCPSS >gi|292821469|gb|ACYT02000016.1| GENE 22 24657 - 25280 589 207 aa, chain - ## HITS:1 COG:no KEGG:Lxx17750 NR:ns ## KEGG: Lxx17750 # Name: not_defined # Def: hypothetical protein # Organism: L.xyli # Pathway: not_defined # 37 205 103 262 267 85 34.0 8e-16 MGANNTEGTHSIRSRVGLLAAALVIIATACGCQQTTPAAEGPWAADIEQARSEWASNEFV QSVLADSAISEAELQDMRQRVLNCLTDKGVTGASFGPSGTLSIPDQPVGSSISAEQQQQF VSTCSNDAGQPIIEALEFNMRVNPDHRDVNELYTQCLIRNKAVEPSFTAQEFTRARESGT PLDSALPFIDPAQGPDILQRCLDDPSK >gi|292821469|gb|ACYT02000016.1| GENE 23 25605 - 26798 1460 397 aa, chain - ## HITS:1 COG:Cgl2078 KEGG:ns NR:ns ## COG: Cgl2078 COG0620 # Protein_GI_number: 19553328 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Corynebacterium glutamicum # 3 397 6 398 401 448 56.0 1e-126 MTIRTTHVGSLPRTPELLEANRARREGSLGEADFTSLLQDQVDGVVKHQAEIGLDIVNDG EYGHAMIDTVDYGAWWTYSFSRFAGLSFEDVQRFDVRPPAGRDGRLSFSSFAERRDWQRF ADAYADPDSGIHIANRNPIAFPTITGELTYIGAEAVERDIAGTKHALEAAGKPVSDGFVA AISPGSAARVANAFYEDDEAVVWAWADVLREEYKRITDAGLTVQIDAPDIAEGWDQMNPE PSVEDYRAFSRVRIDALNHALEGIDPSLVRFHVCWGSWHGPHTTDIAFKDIVDLALLVNA NGLTFEAANARHAHEWTIWRDIELPEGKYLIPGVVSHSTNVVEHPQLVAQRIRQFADIVG DERVVASTDCGLGGRIYPSIAWAKLDALTEGARLASK >gi|292821469|gb|ACYT02000016.1| GENE 24 27121 - 28968 2765 615 aa, chain + ## HITS:1 COG:NMA1361 KEGG:ns NR:ns ## COG: NMA1361 COG0129 # Protein_GI_number: 15794282 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Neisseria meningitidis Z2491 # 6 609 5 612 619 835 68.0 0 MSRPLRSATSTQGRNMAGARALWRATGMTDGDFGKPIIAIANSFTQFVPGHVHLKNMGDL VAGAIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDLIADCVETMVNAHRADALVCI SNCDKITPGMLLAAMRLNIPTIFVSGGPMESGAAVDGVVEHRLDLIDAMVMAVDDSVSDN QLASIEANACPTCGSCAGMFTANSMNCLNEAIGLALPGNGTTLATQIERKKLFTEAGTRI VDMCRAYYDNEDDSVLPRSIATKAAFENAMSLDVAMGGSTNTVLHILAIANEAGVDFTLD DIDAISRRVPCLCKVAPNSTTYHIEHVHRAGGIPALLGELDRAGLLNRDVHSVHSDNLAD WLGEWDVRSGSATDEAKHRFLAAPGGVRTTQAFSTANLFESLDTDSEAGCIRSVEHAYTK DGGLAVLYGNIAANGAIIKSAGIDESLFHFIGKAFVVESQEEAVEAILSKQVKEGDVVVI QYEGPKGGPGMQEMLYPTSYLKGLGLGKKCALITDGRFSGGTSGISIGHISPEAAAGGAI GLVRTGDEIEIDVNNRVLRANVSDEELERRRAEKGAAPWKPSKPRPRQVSDALRVYGMLA ASADKGGVRVLPDWA >gi|292821469|gb|ACYT02000016.1| GENE 25 28992 - 30041 1324 349 aa, chain + ## HITS:1 COG:Cgl1050 KEGG:ns NR:ns ## COG: Cgl1050 COG0095 # Protein_GI_number: 19552300 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Corynebacterium glutamicum # 2 348 4 351 352 342 50.0 9e-94 MHGEYKVPGGKLVVVDTDVEEDRLTRVSVSGDFFLDPDDALTRITASLEGAPASSSAKDL AARVEAALHEGDTLMGVTPEAVGIAVRRAMGAALSWDDIDFDVIHGPVVDPMINVAMDET LVEDVAVGRRKPFMRLWEWNGPQVVIGSFQSYQNEIQQDGVDRYGITVSRRVTGGGAMFM EPGNCITYSLVIPTALVEGMSFEQAYPYLDQWVMEVLEKLGIKAKYVPLNDIASEAGKIG GAAQKRWANGYMVHHVTMAYDIDAIKMNEVLRIGMEKIRDKGTRSAVKRVDPMRSQTGLP REEILKVFFDHFKEKYNASVGTITEADLEVARKRCETKFAREEWVHRIP >gi|292821469|gb|ACYT02000016.1| GENE 26 30117 - 30737 796 206 aa, chain - ## HITS:1 COG:BS_yvbG KEGG:ns NR:ns ## COG: BS_yvbG COG2095 # Protein_GI_number: 16080438 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Bacillus subtilis # 13 203 11 205 211 103 32.0 2e-22 MMTVLAGMSAAILALAPITNPIGGLAAFAGLTAGNAPAAVRSQAWKTGIYVFAILTVFAV SGSLIMRFFGFDLPSLQIAGGLVVAHSGFSMLENKRRATHEETQHATSKPDVSFSPMALP LIAGPGSIGVVIALAARNTAIGFHVGIVLGIAVTAAVIALLLRYGTPWIDKLGATGVGAI VRIMGFLILVIGVELIIHGVRALQLF >gi|292821469|gb|ACYT02000016.1| GENE 27 30785 - 31348 556 187 aa, chain - ## HITS:1 COG:aq_274 KEGG:ns NR:ns ## COG: aq_274 COG0325 # Protein_GI_number: 15605814 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Aquifex aeolicus # 13 186 54 227 228 108 40.0 7e-24 AALREAGLPILLGHNRVQEARATAEAIREVPGARIHLIGPLQSNKINHALACVDAIESLD SPALASKIDARTTGTLPVFVEVNVSGEATKHGCAPADVSALVDVVGASAHLQLAGFMTVG LNSPVEADVRAAYAQLRGIRDEAAAHLGINESDLALSMGMSRDLEWAIAEGATIVRLGTA IFGARRV Prediction of potential genes in microbial genomes Time: Tue May 17 06:11:40 2011 Seq name: gi|292821440|gb|ACYT02000017.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.24, whole genome shotgun sequence Length of sequence - 29068 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 12, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 143 72 ## gi|154509371|ref|ZP_02045013.1| hypothetical protein ACTODO_01902 - Prom 215 - 274 1.6 + Prom 179 - 238 3.1 2 2 Op 1 . + CDS 259 - 648 679 ## COG3304 Predicted membrane protein 3 2 Op 2 . + CDS 668 - 1177 668 ## COG2606 Uncharacterized conserved protein 4 3 Op 1 38/0.000 + CDS 1610 - 3097 2449 ## COG0747 ABC-type dipeptide transport system, periplasmic component 5 3 Op 2 49/0.000 + CDS 3097 - 4065 255 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 6 3 Op 3 4/0.000 + CDS 4062 - 4883 1023 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 7 3 Op 4 . + CDS 4880 - 5776 229 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 8 3 Op 5 . + CDS 5769 - 6527 287 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 9 3 Op 6 . + CDS 6586 - 6864 311 ## Shel_11400 addiction module antitoxin, RelB/DinJ family 10 3 Op 7 . + CDS 6854 - 7153 132 ## COG3041 Uncharacterized protein conserved in bacteria 11 3 Op 8 . + CDS 7186 - 7902 943 ## Ksed_00260 hypothetical protein + Prom 7962 - 8021 5.3 12 4 Op 1 . + CDS 8047 - 8610 650 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 13 4 Op 2 . + CDS 8670 - 9110 351 ## COG0346 Lactoylglutathione lyase and related lyases 14 5 Tu 1 . - CDS 9115 - 11865 3301 ## COG4581 Superfamily II RNA helicase 15 6 Tu 1 . + CDS 12119 - 13603 656 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 + Term 13617 - 13677 8.5 16 7 Op 1 . + CDS 13720 - 14487 1060 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 17 7 Op 2 . + CDS 14552 - 16036 2079 ## COG1457 Purine-cytosine permease and related proteins 18 7 Op 3 . + CDS 16033 - 16830 870 ## COG0005 Purine nucleoside phosphorylase 19 8 Tu 1 . - CDS 16914 - 18086 1509 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 20 9 Tu 1 . + CDS 18231 - 19736 2330 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 19749 - 19800 12.7 + TRNA 19934 - 20005 56.0 # Gln CTG 0 0 + TRNA 20033 - 20105 54.8 # Glu CTC 0 0 + TRNA 20127 - 20202 63.1 # Glu CTC 0 0 + Prom 20129 - 20188 79.8 21 10 Tu 1 . + CDS 20323 - 24447 5107 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases + Term 24464 - 24515 23.1 - Term 24452 - 24502 22.9 22 11 Op 1 . - CDS 24526 - 25263 931 ## COG1414 Transcriptional regulator 23 11 Op 2 . - CDS 25345 - 25536 62 ## gi|154509354|ref|ZP_02044996.1| hypothetical protein ACTODO_01882 + Prom 25226 - 25285 2.8 24 12 Op 1 30/0.000 + CDS 25435 - 26835 2073 ## COG0065 3-isopropylmalate dehydratase large subunit 25 12 Op 2 . + CDS 26911 - 27543 1033 ## COG0066 3-isopropylmalate dehydratase small subunit 26 12 Op 3 . + CDS 27612 - 28937 2026 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Term 28941 - 28979 3.5 Predicted protein(s) >gi|292821440|gb|ACYT02000017.1| GENE 1 2 - 143 72 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509371|ref|ZP_02045013.1| ## NR: gi|154509371|ref|ZP_02045013.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC 17982] # 1 42 1 42 232 67 95.0 3e-10 MSIPEAIATARDRIDRATSACGRTDSVHLELAVKTRTPEECRAAAAA >gi|292821440|gb|ACYT02000017.1| GENE 2 259 - 648 679 129 aa, chain + ## HITS:1 COG:Cgl0825 KEGG:ns NR:ns ## COG: Cgl0825 COG3304 # Protein_GI_number: 19552075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 1 122 1 122 136 147 63.0 5e-36 MRTLLNIIWFLFGGLPLFLGYLLAGLFSCIFIVTIPAGVACFRIAGYVLWPFGKRVIDKP GVGAGSGIMNIVWFLVAGLWLAIGHITTAAAQAVTIVGIPLAIANLKMIPITCFPFGKAV IDDPTASIL >gi|292821440|gb|ACYT02000017.1| GENE 3 668 - 1177 668 169 aa, chain + ## HITS:1 COG:ECs0534 KEGG:ns NR:ns ## COG: ECs0534 COG2606 # Protein_GI_number: 15829788 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 14 168 2 157 159 136 45.0 2e-32 MARKHSKDHGGGPTRAIEALTAAGVACTVHEYEHDPAARSFGEETVEKLGIDPTQAFKTL MVRLEPTGEFVVGCVPVRAHLSMKLIAKAAGAKSAAMADPAVAQRRTGYVVGGISPLGQT TSHRVFIDSACLDHETMIISGGRRGLSVELSPLDLVELTDAEVTDLAQV >gi|292821440|gb|ACYT02000017.1| GENE 4 1610 - 3097 2449 495 aa, chain + ## HITS:1 COG:BMEII0284 KEGG:ns NR:ns ## COG: BMEII0284 COG0747 # Protein_GI_number: 17988629 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Brucella melitensis # 9 477 19 487 506 287 35.0 4e-77 MTAHKPLALTAATIAAAMALAACSGGAASNSASDAIEIGSLYEPVNLSNIAGGGQGVTEA LNGNVYEGLFYLADDGTIQPQLATSYDVSEDGLTYTFHLREGVTFSDGAAFDAADAVHSI NRVLAEDSQSARKSQLAVINSVEATDPQTLTVTLSQRSISLPYNLSYLWMVPEGFDSQTE TDGTGPYTLDAWTKGSTLALKAREGYWGDSPKNDAVTFHYYTDATAMTNALSAGDIDIIT SLQSPDALATFQGNSDFAVSEGTSTTKELLAFNDAQAPFNDARVRQAIYSAIDREKLLES IWGNAGQVIGSMVPPSDPWYEDLTSVNPYDPERSKALLAEAGAEGLSFTLDTPSYDPHPT VAEFVKSELAKVGVTVTINTITADEWYSKVYKEHDFQATLQEHVNTRDVVWYGNPKFYWG YNNEAVTALIDEAEQASTEDEQTEKLRAANEQIAADAASAWLYLYPQIVVARSNVSGYGV NGLNSQFFVSGISKK >gi|292821440|gb|ACYT02000017.1| GENE 5 3097 - 4065 255 322 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 62 310 40 310 320 102 27 2e-21 MTRYLLRRTGLLILTGSAALLAIFVLLRLLPGDPANALLSGTATPEQIEAARRQVGSDLP WWSQFGEWASVLLHGDLGTSFTSGLSVNDQIASRMAVTLPLTLAAFGISLILAIVLGYVA ARARRSWAGTVISALAQLGIAVPVFWIGMLLVLVFAVNLHWLPASGFPARGWTNAAQAVR ALVLPTLTIVLVSTASLTRYTRSAALDVLDAPFLQFARSLGESRGEAMVRHGLRVASIPV VSIAGIELATTFIGAVVVEQVFALPGLGSMLTTAIAQHDYPSIQGVLLVSTTLVLVIGFV ADVLQRVIDPRLRTSLSAGDRP >gi|292821440|gb|ACYT02000017.1| GENE 6 4062 - 4883 1023 273 aa, chain + ## HITS:1 COG:Cgl2270 KEGG:ns NR:ns ## COG: Cgl2270 COG1173 # Protein_GI_number: 19553520 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 4 269 5 271 276 159 44.0 4e-39 MKARRIPLSLVVGALLVGVLALVALVSLVWLPYPIEDTSGGRLEGFSAAHLLGTDRLGHD LASRMMVGARIALIVGLGAVVVADLIGVSVGLAIALARPWVDDVASAMLDVLIAFPTLLL AMLIVAGFGASLATVTVAIGVAASAVVARLTRILARRVLAEQYVLAARTSGVSTWGILTR HVLPNIWPTLATNLAVTVGGAVLAEAGLSYLGLGAPPPNASWGRLLQDAQATFTTQPLGA IAPGLAIVAFVLGANLAADGLRSLVDPTQGGAK >gi|292821440|gb|ACYT02000017.1| GENE 7 4880 - 5776 229 298 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 240 2 232 245 92 29 2e-18 MSLSITDLNVWIGDAHILRGITLEVPDGQHVGIIGSSGSGKSMLSLAIMGLLPEGARVEG SIRWDGRELVGASERELRSLRGSQISMMFQDPATSLDPLMRLGKQIALPLRRHRGLRGAA LREAIKRALAEVALPDPARIARSFPYEVSGGQRQRVALAMTLAASPSLLIADEPTTALDV TVQRTVLDLLDEVTRERGVSLLFISHDLPVVARMADRVIVVDAGRITDDVPVEVFRTAPD ILSDSARSIASAARALDSVFERIGAVRPDSQPGHAPGEAGEREGEPASSTDNEGNAHE >gi|292821440|gb|ACYT02000017.1| GENE 8 5769 - 6527 287 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 25 245 31 258 563 115 32 4e-25 MSEPILSARGVSFRYPGSDAGLDDVSVEVHAGESVALVGESGSGKTTLARILLGLLAPSA GEVLLDGEIIRASSKSSMRTLRRSVQTVFQDPFSSLDPRMKIGASIAEPLHALGVSRGQE ARARVREVLTDVGIDPARAGEYPGSFSGGQRQRIAIARALAPAPRVLIADEPVSALDMST RASVMDLLGSITRKRGMALVLVSHDLATVASTCDRIAVMQEGRIVEAGDTRQIMSAPREP YTRALIEAVPRL >gi|292821440|gb|ACYT02000017.1| GENE 9 6586 - 6864 311 92 aa, chain + ## HITS:1 COG:no KEGG:Shel_11400 NR:ns ## KEGG: Shel_11400 # Name: not_defined # Def: addiction module antitoxin, RelB/DinJ family # Organism: S.heliotrinireducens # Pathway: not_defined # 2 90 3 91 92 106 62.0 3e-22 MKTATLNMRVDPSVKEEAERVYAQFGMNLTDAVNVFLHKSIMEGGLPFDLRQPRFNADTE LAMREARDIAAGRVAATRYASAAQAFADVDDE >gi|292821440|gb|ACYT02000017.1| GENE 10 6854 - 7153 132 99 aa, chain + ## HITS:1 COG:SP0276 KEGG:ns NR:ns ## COG: SP0276 COG3041 # Protein_GI_number: 15900210 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 17 98 9 92 92 77 46.0 5e-15 MMSEPQRGQRALVMTGQFKKDLKRVRKRGLSIKELEAVIDLILAGEVLPPQWRDHLLTGD YAGFRECHIRPDWLLIYLDEPEICVVTAIRTGSHSDLFQ >gi|292821440|gb|ACYT02000017.1| GENE 11 7186 - 7902 943 238 aa, chain + ## HITS:1 COG:no KEGG:Ksed_00260 NR:ns ## KEGG: Ksed_00260 # Name: not_defined # Def: hypothetical protein # Organism: K.sedentarius # Pathway: not_defined # 5 230 7 227 242 131 38.0 2e-29 MVELTELSRRGRAAYWVVAALAWAGVAATLIITAFDGYAAPTYVEEGLFAGVAHGWAGAP ERLINCLSYFTELSNIMVAIISTRLARRGRVGAWGRATHLCALMMITVTAIVYATLIGPY EVLSGFALVTNPLQHIVVPAAFVGTAALAGPRGGIAWATLGRALLIPITWVAYTLIRGTF THQYPYGFVNVWRIGYVQVTINIVAILIGALLFMAIFAGIDWIILQTGRTGAKRFKGA >gi|292821440|gb|ACYT02000017.1| GENE 12 8047 - 8610 650 187 aa, chain + ## HITS:1 COG:mll6586 KEGG:ns NR:ns ## COG: mll6586 COG2249 # Protein_GI_number: 13475499 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Mesorhizobium loti # 2 182 4 189 196 100 34.0 2e-21 MKILVIQGSPDVASYSQELASAYAEEASRAGHEVRTIDLATEDFDPNLRYGYRKHMEDES APERYQELIAWADHLVFSFPIWWSAEPAILKGFIDRTFTPRFAYRFADGKSEAKLTGKTA ALILTSRASALIYRLFGGPVTRWKHMILGFVGIRLTDTFILGKIDHPQDTPEYRAEFVEK VRRYARR >gi|292821440|gb|ACYT02000017.1| GENE 13 8670 - 9110 351 146 aa, chain + ## HITS:1 COG:DR1341 KEGG:ns NR:ns ## COG: DR1341 COG0346 # Protein_GI_number: 15806358 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Deinococcus radiodurans # 3 136 2 135 144 179 64.0 1e-45 MTSEPGLVPELAVTNYEASRRFWCDLVGFCLRYERPEEGFGYLVLDNAHLMLDQINHGRT WATGPLEPPLGRGINLEVQVEDLDAAWRRLTQAQWPIFVEPEEQWYRAGEREIGVRQFLV QDPDGYLVRLQQEIGERRAPETQGGE >gi|292821440|gb|ACYT02000017.1| GENE 14 9115 - 11865 3301 916 aa, chain - ## HITS:1 COG:Cgl1878 KEGG:ns NR:ns ## COG: Cgl1878 COG4581 # Protein_GI_number: 19553128 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Corynebacterium glutamicum # 5 913 7 847 850 758 46.0 0 MSATLNEILDDLEDEGRLGHDDALYEAFVSWAEGTGRPLYPHQEEALVEILAGNHVIAAT PTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFDLVSLFGADNVGMVTGDVSLN ADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGDRQRGWAWQVPLLELRTPQVVA MSATLGDTTRFERAWKERTGRDVSLIDDAERPVPLEFEYVVDRLPDTVERLLGEGRWPVY IVHFSQRDAVATAQCFDRSSLISPEQKKAIAAQLAGVSFTKGFGQTLKSLLAQGIGVHHA GMLPRYRRLVERLTQAGLLPIVCGTDTLGVGINVPIRTVLMTSLVKYDGRRMRHVSAREF HQIAGRAGRAGFDTVGFVRVLAPEHEVDAARERARLSAAQEAARDAREAKRAAKKSAKKR KGPGEGEISWTRSTFERLVDAAPEQLTSRFEMTHAMVLNVLAGAPAAGRDPGEHLVWLAR NNDDPPTDRNPHLRRLGEIYTSMKQAGVVEHVSSADASASGEPRLRAATDLPDDFALNQP LSPFALAALELLDPESPTFALDVVSVIESVLEDPRPLLFAQEKAARAEAVAAMKAQGMDY DERMAALEEVTWPRPLADLLGEAFAVYLHANPWIEDQEISPKSVVREMIENALTFTGIVG RYDVGRSEGIVLRYLTDAYRALRQIVPDELMTDELRSIIAWLSALIRAVDSSLLDEWEAM STGQAIPASEGDGTQGAELAFGAREDGTVPFSANRHAFRTAIRGALFERVEAMSRDNVEA LARLDKASRTPVAAPWGEDEWDAVLERYWAEHEWIGIDQRARALSLCSLNEAPTREDVLE LAPAVVSSDFERAQVARIEAIADAVDQAAAGTFWLATQTLFDSEEDMDWRIVALVDVGAS DEANRVALATVTVGPR >gi|292821440|gb|ACYT02000017.1| GENE 15 12119 - 13603 656 494 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 21 456 20 440 456 257 35 7e-68 MEHIAQIEQQIADWITMHLTIVILIGVGLVLTVVSRGVQLRLFPEMVRTVLGSRKGADGG ISSFQAFAISLAARVGIGNVFGVAAALMFGGPGAIFWMWVVALVGMATAFFEATLAQIFK VKHSDGSFRGGLAYYIKRGMKNRVLANVFAVITVVTCGIVITSVQSNAIAGTLTSAFGEA AKQPLPGAGGFSAAQLTVAGLIFVFSAMVIFGGIRTVARVTEWMAPIMATIYVIMVAIVC LMNITQFGTVLGQIFTSAFSMDATVGGLGGGIIAAMINGTKRGLFSNEAGQGTAPNAAAT ATVSHPVRQGLIQSLGVFIDTIVVCTATAFVILIAGEKVWSGADVNPSNLTTLAVANELG AWTIVPMAILIFVLAYSSIIAAYVYSDTNMSFVFGDARWATWTVRVVCVASATIGALLTL DVVWNAVDIAMAVMTITNLVALVFLARWVLGALRDYEAQRRDGVAEPVFVGEKNPLLPGD VPGSVWKRPKQKKK >gi|292821440|gb|ACYT02000017.1| GENE 16 13720 - 14487 1060 255 aa, chain + ## HITS:1 COG:MT3071 KEGG:ns NR:ns ## COG: MT3071 COG0179 # Protein_GI_number: 15842549 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 29 254 12 235 239 183 48.0 3e-46 MRIARFSDGTNPVYGALEEGSTRIVGLKGDPLFSPVEPSGQIYELDEVRLLSPVIPRSKV VGIGDNYSDTPIPADERPEPPIFLKANTSVVGPDDPIAIPAWSNAVAFEGELAIVIKSLA KDVSVEDAPQMILGYTIANDATARDAMTGGPWSRGKSFDSACPLGPWITVDPALDVTNLA IRSYLNGEIAQDSSTAHMIWNPFELVSYVSHQMTLLPGDVIATGAPAGVEIVHAGDRVEI EIEGIGSLTNPVVRA >gi|292821440|gb|ACYT02000017.1| GENE 17 14552 - 16036 2079 494 aa, chain + ## HITS:1 COG:PA2073 KEGG:ns NR:ns ## COG: PA2073 COG1457 # Protein_GI_number: 15597269 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Pseudomonas aeruginosa # 1 407 1 399 476 99 26.0 2e-20 MSEPQSSGALAVEMAGLDVIPESDRKGKPSDLFMPWFAANISVLGISWGSWILGFGLSLG QAVVVSVVGVALSFLVCGLIAIAGKRGSAPTLVLSRAAFGFNGNRISAAISWILTVGWET FLAIMAVQATATVMGALGFTNHVVAQIIALILVVVLAAGSGILGFEAIMKVQTWITWATA ALTIVYLVLVAPTIDFAVLSSRPSAPMTAVLGAGCMLLVGFGFGWINAAADYSRYLPRAA STKGVVGWTTVGAALPTIILVFFGILLVGSADESLSEAIGGDPIGALTTLLPTWFLIPFA LVAILGLIGGIVMDIYSSGLSLLATGVPVSRPVATAIDGTIMTVGTIVVVFFADSFLTPF TAFLTTLGVVIAAWGGVMLADIALRRNDYDEPSLFAPSGRYGSVNWGAVASLIVGSLVGW GLVVNASASWLSWQGYLLGPLGGRDGDWAGANIGILLAMVVGFVGYWVTSAGRVRAQEKL PSRTYAEGAHEDEQ >gi|292821440|gb|ACYT02000017.1| GENE 18 16033 - 16830 870 265 aa, chain + ## HITS:1 COG:lin2067 KEGG:ns NR:ns ## COG: lin2067 COG0005 # Protein_GI_number: 16801133 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Listeria innocua # 12 254 3 259 272 119 32.0 5e-27 MSVDPRFTQALLDDEAQAGARVLTVLAGRPDALVVLGSGLSEALDEAWGAPVATVSLGDI PGVVAPVADGHGGELRAYEACGGVVLVATGRTHLYEGLGVRPVAALARAAVAAGISRAVL TNANGCLKPWNLGDVMAITDHVNVSGASPFDGPLFLDVSAVWDAQMTQALRGVCQREGTY AILRGPEYQTMAETRILSGLGVDCVGMSTVMEAITLHALGVRVAGMSVVSDLSFADGPTD PTAVVEAASAARQTVVAGIEVALGA >gi|292821440|gb|ACYT02000017.1| GENE 19 16914 - 18086 1509 390 aa, chain - ## HITS:1 COG:Cgl2256 KEGG:ns NR:ns ## COG: Cgl2256 COG1168 # Protein_GI_number: 19553506 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Corynebacterium glutamicum # 16 390 14 368 368 200 33.0 3e-51 MSVRLFSDSHLYRTGSLKWTGITTASGEPTIGAWVAEMDFGTAPEVAEAMKGAIDDGLLG YQPTWLEPRIAGVTAEFQKRRFGWDVDASHVRLVASVLPALEATIQHLVRPGSPIIVPTP AYMPFLTIPGKFDHPVIEVPSLRGTRAGGRGWALDLEGIRAGLEAGAGLVILCNPWNPVG RVLREDELRALHDVVSGYDALVFSDEIHSSLVLDEQIPFVSYASLSPSFASHTVTATAAS KGWNIAGLPSAQVILPDEALRERWDVFAADVRHDANVIGTVGAIAAYERGDAWQREVKDL IRSNVDLVERALADTPIDFVRPEGTYLTWWGFEGVDLGPLSPAATLRERARIAANEGRTL GADYASWARINLACAPDAASRIVERVLGLL >gi|292821440|gb|ACYT02000017.1| GENE 20 18231 - 19736 2330 501 aa, chain + ## HITS:1 COG:Cgl1263 KEGG:ns NR:ns ## COG: Cgl1263 COG0008 # Protein_GI_number: 19552513 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Corynebacterium glutamicum # 10 497 3 484 493 616 61.0 1e-176 MSETTATGADVRVRFCPSPTGTPHVGMVRTCLFNWAYARHTGGTFVFRIEDTDAARDSQE SFDQIIESLQWLGLDWDEGVGKGGPHGPYRQSERMDIYRDVAARLLEAGYAYESYSTPEE IEERHRAKGEDPKLGYDGFDRNLTEEQIAAFRAEGRQPVLRLRMPDEDITFTDLIRGEIT FKAGSVPDYVIVRANGHPLYTLVNPIDDALMEITHVLRGEDLLSSTPRQIVLYRALEAIG VAKFMPRFGHLPYVMGEGNKKLSKRDPESNLLLHKAAGMIPEGLNNYLALLGWSIAADRD IFSMEEMAQAFDISDVNPNPARFDQKKAIAINAEQIRLLDGEDFRNRLVPFLHRDEVVSA DSFEALTDREREILTEAAPLIQTRIQLLGEATGMLAFLFVADDALEMDEKAVSKLKDNAA DVLDAAIETVEGLTELTTAALEESLRARIVDEMGVKPRLAFGPLRVAVTGRQVSPPLFES MEILGRDSSLTRLRALRASLA >gi|292821440|gb|ACYT02000017.1| GENE 21 20323 - 24447 5107 1374 aa, chain + ## HITS:1 COG:DR0405 KEGG:ns NR:ns ## COG: DR0405 COG1523 # Protein_GI_number: 15805432 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Deinococcus radiodurans # 326 1172 98 910 910 625 46.0 1e-178 MGGDRFWTRESVVTYRLNRTFLRRTLSVGAAIALMGGVLPAAWAAPGTETSNEGNDATAV DAGAAGAAADVLVTIPGNHNAAMGCDADWAPGCDKAALTRDATGVYSATFTLPAGDYQYK VAEGGSWDTSFGAGGAAGGANISYTLTETTSVTFFYNRATHRVWNTATDQMVTLPGSFQK ALGCTDNWKPECLAPLMEPVGKGTYTYETTALPEGSYELKVAIDGSWNENYGQDGAVGGA NYQFATKANKLVTFTYDSATHKLDIAASDAPVAGSGEQRAYWVTSNILAWPTSLLPEGVS RAQVLDGSAKLSYELVTAPEGGAGLADGAVTGATTSALTVAGDLPAEVTAAHPNLNGYIA LKASLDEAGAREALTGQIAVAQKSGESVNAFTGVQIAPVLDSLYAAKATQASYGVGWNEV GNPTFALWAPTAKNVTLLSWNTSTPRGSDADVQGDGLRTAAVRGEDGRWSVDNAAGEIHE GAQYLWEVSVYVPETGKVETNLVTDPYSVALTVDSTRSVAVNMDNPSIAPSVWTDSKAPV IEDDAQRSIYELHVRDFSAADTSVPEYMRGTYMAFTQFESNGMRHLAELSRAGMNTVHLL PTFDIATIPENRTDQKTPAIPEDAGPASEEQQAAVTAVADQDAYNWGYDPLHWMAPEGSY ATSSQQNGGARVREFRSMVGGLHSIGMQVVLDQVYNHTPAAGQSAHSVLDRVVPGYYQRL NASGGVETSTCCSNVATENAMSEHLMIDSMIHWAKYYHVDGFRFDLMGHHPAEEMKRAKA ALASLTLEKDGVDGSRMYIYGEGWNFGEVANNALFTQATQGQLDGTGIGAFNDRLRDAVH GGGPFDEDHRVLQGFGSGAFSDLNGLDTRSEADRRADYLHRVDLVKLGLAGNLKDYTLTT YDGKTVSGAQLDYNGQGAGFASQPAENVNYVDAHDNETLFDLVTYKMPADAPMDHRVRMS LISQASVALSQSPSFWASGTEMLRSKSLDRDSYNSGDHFNAIDWSMRDNGFGRGLPVKSK NGAAWNHMRPLLENPDLKPTPEQIDTSSEIAMDFLRVRSSSRLFTLGSADLIRSKVTFPN SGEGAVDGTILMLINDEAGAGNDIDAKLDGALVVFNATGESVTTAVEGLSGRVFKLHEAQ ANGSDETVKGASFDAKTGSVTVPARTVAVFTQAAGDRIDPTVTPEPDPAAAQWVASGDGR WWLRYPDGSYPANERVVRGGVTYSFDANGWMKTGWQVEDGAWRYYAPSGAMATGWTAVDG TWYYLDPDTGAMATGWLKDGDTWYYLRSSGAMATDWVNVGGGWFYLNGNGSMATGWANVG GQWYYLTESGQMAIGWVKDGGSWYFCHPSGAMATGRVVIDGTAYTFDGAGRWVA >gi|292821440|gb|ACYT02000017.1| GENE 22 24526 - 25263 931 245 aa, chain - ## HITS:1 COG:MT3067 KEGG:ns NR:ns ## COG: MT3067 COG1414 # Protein_GI_number: 15842545 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 7 218 39 249 267 187 56.0 2e-47 MEEQTSSGVGVLDKAALVLSALEAGPATLAQLVSSTGLARPTAHRLAVALEYHRMVARDM QGRFILGPRLQELSSAAGEDRLLQASMPVLQALRDHTKESSQLFRRQGDYRVCVAASERE MGLRDSIPVGATLSMSAGSAAQVLLAWEEPDRLHRGLYGASFNATMLSEVRRRGWAQSVG EREPGVASVSAPVRGPSGRVLAALSISGPIERMGRQPGRQHGPSVMAAANRLTEFLSTVE DAADL >gi|292821440|gb|ACYT02000017.1| GENE 23 25345 - 25536 62 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509354|ref|ZP_02044996.1| ## NR: gi|154509354|ref|ZP_02044996.1| hypothetical protein ACTODO_01882 [Actinomyces odontolyticus ATCC 17982] # 22 63 1 42 42 70 80.0 4e-11 MHEMEVDVEQVGGAVLPLGHDVVTPHFFCHRSAHCSSSVLRFGDTVSFMLRIQWNRLIGR ATR >gi|292821440|gb|ACYT02000017.1| GENE 24 25435 - 26835 2073 466 aa, chain + ## HITS:1 COG:MT3066 KEGG:ns NR:ns ## COG: MT3066 COG0065 # Protein_GI_number: 15842544 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Mycobacterium tuberculosis CDC1551 # 4 466 10 472 473 703 74.0 0 MSGTMAEKVWRDHIVSKGENGAPDLLYIDLHLVHEVTSPQAFEGLRLAGRQVRRPDLTIA TEDHNTPTINIDQPIADITSRTQIDTLRKNAEEFGVRLHSLGDADQGIVHVVGPQLGLTQ PGMTIVCGDSHTSTHGAFGALAFGIGTSQVEHVLATQTLPMAPFKTMAITVNGSLPEGST AKDIILAVIAKIGTGGGQGYVLEYRGQAIHELSMEGRMTICNMSIEAGARAGMIAPDQTT FDYIKGRPHAPEGEDWDRAVEYWSSLASDEDAVFDAEVILEAADIEPFVTWGTNPGQGVP LSATVPAPEDFTDETARAAAERALEYMDLKAGTPMRDITVNTVFIGSCTNGRIEDLRAAA GIFKGRRKAEGVRVMVVPGSARVRLQAEAEGLDKIFTEFGAEWRNAGCSMCLGMNPDTMN AGDRSASTSNRNFEGRQGKGSRTHLVSPLVAAATAVRGTLSSPADL >gi|292821440|gb|ACYT02000017.1| GENE 25 26911 - 27543 1033 210 aa, chain + ## HITS:1 COG:Cgl1285 KEGG:ns NR:ns ## COG: Cgl1285 COG0066 # Protein_GI_number: 19552535 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Corynebacterium glutamicum # 1 194 1 195 197 290 71.0 2e-78 MEKFITHTGIGVPLRRSNVDTDQIIPAVYLKRVTRTGFEDALFAAWRNDPEFVLNQDAYK NGSVLIAGPDFGTGSSREHAVWALKDYGFRVVLAPKFADIFRGNSGKQGLVTGIISQEDC VSLWKLLEAEPGTEVTVSLEDKTWRAGAISGTFQIDDYVRWTLMEGLDDIALTLRHEDEI AAYEAARPSFKPRTLPAKFLPKEEVVSARD >gi|292821440|gb|ACYT02000017.1| GENE 26 27612 - 28937 2026 441 aa, chain + ## HITS:1 COG:CT455 KEGG:ns NR:ns ## COG: CT455 COG0766 # Protein_GI_number: 15605182 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Chlamydia trachomatis # 5 441 4 439 444 347 43.0 2e-95 MSSILQVEGSHPLRGEITVRGAKNFVPKAMVASLLADTPSELYNVPLIRDTDVVSDLLSL HGVQIDFDQDRGTLRMDPSNVKIASRSDIDTLAGASRIPILFCGPLLHQLGEAFIPELGG CAIGGRPIDFHLETLRKFGAIVDKQPDGVHIKRPSSGLHGAIIELPFPSVGATEQTLLTA VRNEGITTLKGAAIEPEILDLINVLQKMGAIISVDTDRTIRIEGVAKLNGYRHTALPDRI EAASWGAAALATHGDIYVRGAHQPDMTTFLNTFRKVGGAFDIDADGIRFYHPGEPLHSIA LETAVHPGFMTDWQQPLVVALTQAEGLSIVHETVYENRFGFTEALCKMGANIQVYRECLG GTPCRFGQKNYYHSAVISGPTPLHSADIEVPDLRGGFSHLIAALAASGTSTVSGIDVISR GYEHFTRKLHRLDARVRYLDA Prediction of potential genes in microbial genomes Time: Tue May 17 06:12:19 2011 Seq name: gi|292821366|gb|ACYT02000018.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.25, whole genome shotgun sequence Length of sequence - 78011 bp Number of predicted genes - 73, with homology - 69 Number of transcription units - 36, operones - 15 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 821 886 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 2 2 Tu 1 . + CDS 872 - 1645 1164 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 1703 - 1747 -0.6 3 3 Tu 1 . - CDS 1642 - 2040 364 ## cauri_1519 putative secreted protein + Prom 2275 - 2334 1.8 4 4 Op 1 4/0.000 + CDS 2360 - 3379 1141 ## COG0240 Glycerol-3-phosphate dehydrogenase 5 4 Op 2 . + CDS 3430 - 4566 1306 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 6 4 Op 3 . + CDS 4616 - 5533 1014 ## HMPREF0573_11195 hypothetical protein + Term 5704 - 5738 7.0 + TRNA 5625 - 5700 82.1 # His GTG 0 0 + Prom 5627 - 5686 79.1 7 5 Op 1 . + CDS 5883 - 6134 142 ## Gbro_0739 transposase IS3/IS911 family protein + Term 6141 - 6181 1.3 8 5 Op 2 . + CDS 6488 - 6781 57 ## 9 5 Op 3 . + CDS 6812 - 7870 1648 ## COG1064 Zn-dependent alcohol dehydrogenases + Term 7892 - 7927 8.8 10 6 Tu 1 . - CDS 8483 - 8701 185 ## - Prom 8774 - 8833 1.6 + Prom 8565 - 8624 2.1 11 7 Tu 1 . + CDS 8716 - 8955 231 ## gi|293189639|ref|ZP_06608356.1| hypothetical protein HMPREF0970_00675 12 8 Tu 1 . + CDS 9061 - 9717 115 ## gi|293189640|ref|ZP_06608357.1| hypothetical protein HMPREF0970_00676 13 9 Tu 1 . - CDS 9451 - 9726 136 ## 14 10 Tu 1 . + CDS 9728 - 10531 153 ## gi|293189641|ref|ZP_06608358.1| conserved hypothetical protein + Prom 10877 - 10936 1.7 15 11 Op 1 . + CDS 10960 - 11487 293 ## COG0778 Nitroreductase 16 11 Op 2 . + CDS 11484 - 12182 593 ## gi|293189644|ref|ZP_06608361.1| CAAX amino protease family protein 17 11 Op 3 . + CDS 12172 - 13182 430 ## gi|293189645|ref|ZP_06608362.1| hypothetical protein HMPREF0970_00681 18 11 Op 4 . + CDS 13179 - 14063 248 ## COG1131 ABC-type multidrug transport system, ATPase component + Term 14178 - 14228 1.5 19 12 Op 1 . + CDS 14282 - 14812 452 ## SRM_00927 ABC-2 type transport system integral membrane protein 20 12 Op 2 . + CDS 14716 - 16311 1138 ## COG1944 Uncharacterized conserved protein 21 12 Op 3 . + CDS 16323 - 16793 426 ## gi|293189649|ref|ZP_06608366.1| conserved hypothetical protein - TRNA 17200 - 17273 80.4 # Gly TCC 0 0 + TRNA 17372 - 17448 94.5 # Pro TGG 0 0 + Prom 17374 - 17433 79.0 22 13 Op 1 . + CDS 17498 - 17779 322 ## gi|154509336|ref|ZP_02044978.1| hypothetical protein ACTODO_01861 23 13 Op 2 29/0.000 + CDS 17998 - 19317 2289 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 24 13 Op 3 5/0.000 + CDS 19492 - 20142 776 ## COG0740 Protease subunit of ATP-dependent Clp proteases 25 13 Op 4 24/0.000 + CDS 20142 - 20786 973 ## COG0740 Protease subunit of ATP-dependent Clp proteases + Term 20876 - 20920 -0.7 + Prom 20890 - 20949 1.9 26 13 Op 5 . + CDS 21027 - 22286 245 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 27 13 Op 6 4/0.000 + CDS 22333 - 22689 538 ## COG1605 Chorismate mutase + Term 22726 - 22769 3.3 28 13 Op 7 . + CDS 22912 - 23937 715 ## COG1609 Transcriptional regulators 29 14 Tu 1 . - CDS 23998 - 27042 2287 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 27087 - 27146 3.6 + Prom 27109 - 27168 2.9 30 15 Tu 1 . + CDS 27230 - 28672 1877 ## COG2211 Na+/melibiose symporter and related transporters + Term 28741 - 28781 10.2 + Prom 28967 - 29026 2.5 31 16 Op 1 . + CDS 29070 - 29546 670 ## gi|154509326|ref|ZP_02044968.1| hypothetical protein ACTODO_01851 32 16 Op 2 . + CDS 29585 - 30619 1306 ## Ndas_4786 peptidoglycan-binding domain 1 protein 33 16 Op 3 36/0.000 + CDS 30616 - 31314 319 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 34 16 Op 4 . + CDS 31304 - 32512 1269 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Term 32518 - 32588 17.1 35 17 Op 1 . - CDS 32619 - 34502 2382 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 36 17 Op 2 . - CDS 34662 - 34892 263 ## gi|293189664|ref|ZP_06608381.1| toxin-antitoxin system, toxin component, RelE family 37 18 Op 1 . - CDS 35003 - 35299 357 ## gi|293189665|ref|ZP_06608382.1| toxin-antitoxin system, antitoxin component, PHD family 38 18 Op 2 . - CDS 35353 - 35601 261 ## COG5646 Uncharacterized conserved protein 39 19 Tu 1 . + CDS 35961 - 37625 1145 ## DEFDS_0894 hypothetical protein 40 20 Tu 1 . - CDS 37748 - 40501 3602 ## COG0525 Valyl-tRNA synthetase 41 21 Op 1 1/0.000 + CDS 40684 - 42039 1323 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 42 21 Op 2 38/0.000 + CDS 42157 - 43746 2071 ## COG0747 ABC-type dipeptide transport system, periplasmic component 43 21 Op 3 49/0.000 + CDS 43747 - 44697 1004 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 44 21 Op 4 13/0.000 + CDS 44697 - 45554 870 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 45 21 Op 5 . + CDS 45551 - 47107 222 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 46 21 Op 6 . + CDS 47104 - 48204 453 ## COG0456 Acetyltransferases 47 22 Op 1 . - CDS 48294 - 49658 1966 ## COG2056 Predicted permease 48 22 Op 2 . - CDS 49729 - 50535 829 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 50564 - 50623 3.0 49 23 Tu 1 . - CDS 50686 - 52656 2814 ## COG0433 Predicted ATPase 50 24 Op 1 7/0.000 + CDS 52863 - 53594 412 ## COG1555 DNA uptake protein and related DNA-binding proteins 51 24 Op 2 10/0.000 + CDS 53618 - 55141 636 ## COG0658 Predicted membrane metal-binding protein 52 24 Op 3 . + CDS 55289 - 56266 880 ## COG1466 DNA polymerase III, delta subunit 53 24 Op 4 35/0.000 + CDS 56321 - 58069 216 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 54 24 Op 5 . + CDS 58071 - 60005 3070 ## COG1132 ABC-type multidrug transport system, ATPase and permease components + Term 60025 - 60066 12.5 - Term 60137 - 60173 11.7 55 25 Tu 1 . - CDS 60198 - 60542 311 ## PROTEIN SUPPORTED gi|227874747|ref|ZP_03992900.1| ribosomal protein S20 - Prom 60592 - 60651 3.2 56 26 Tu 1 . - CDS 60677 - 61417 788 ## Xcel_2206 hypothetical protein - Prom 61454 - 61513 1.9 57 27 Op 1 . + CDS 61481 - 62497 836 ## gi|293189686|ref|ZP_06608403.1| hypothetical protein HMPREF0970_00724 58 27 Op 2 . + CDS 62522 - 64471 2550 ## COG0481 Membrane GTPase LepA 59 28 Tu 1 . + CDS 64567 - 65310 701 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 65311 - 65347 -0.4 60 29 Tu 1 . + CDS 65479 - 66669 1023 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 66699 - 66759 -0.8 61 30 Tu 1 . - CDS 66755 - 67000 183 ## + Prom 66723 - 66782 3.0 62 31 Op 1 . + CDS 66969 - 67658 550 ## Sked_24060 hypothetical protein 63 31 Op 2 . + CDS 67651 - 68469 808 ## Sked_24070 hypothetical protein 64 31 Op 3 . + CDS 68495 - 69397 750 ## Sked_13390 hypothetical protein 65 32 Op 1 3/0.000 + CDS 69526 - 70569 1089 ## COG1420 Transcriptional regulator of heat shock gene 66 32 Op 2 4/0.000 + CDS 70621 - 71739 1293 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 67 32 Op 3 . + CDS 71746 - 72534 717 ## COG1385 Uncharacterized protein conserved in bacteria 68 33 Tu 1 . - CDS 72541 - 73440 814 ## COG2017 Galactose mutarotase and related enzymes - Prom 73472 - 73531 3.0 69 34 Tu 1 . + CDS 73492 - 74898 1917 ## COG3579 Aminopeptidase C 70 35 Op 1 . + CDS 75377 - 75670 183 ## Sked_12620 adenosine deaminase 71 35 Op 2 . + CDS 75710 - 76393 617 ## RMDY18_18410 inorganic pyrophosphatase/exopolyphosphatase + Prom 76446 - 76505 3.9 72 35 Op 3 . + CDS 76534 - 77409 497 ## CMS_1465 putative aminopeptidase + Term 77509 - 77569 16.0 + Prom 77593 - 77652 1.9 73 36 Tu 1 . + CDS 77736 - 78009 149 ## Elen_1126 transposase and inactivated derivative Predicted protein(s) >gi|292821366|gb|ACYT02000018.1| GENE 1 3 - 821 886 272 aa, chain + ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 1 271 35 295 295 79 25.0 7e-15 VRLTTPGDDPAAIAGEVASGSFVAALGGDGYLGAVARGCHESDAIFVPMPGGRGNDLCRA LRIGTDPLVRARSLAPLGFSSNEAGADSSDWLASRIRPLDGMWVRSRDGVRLALGIVSIG LDARANILANESSFISGPLAYGYGAFAALASHEPTEIVATVDGVERNMSGWIASASNSGV FGGGITLVESSDMSDGVLEVCHVGPLSLSRALPVLARVVAGRAKAHPAIEVESARVVSFA APAGMIAMADGDRIASIPFTVDVAPGVVSVLV >gi|292821366|gb|ACYT02000018.1| GENE 2 872 - 1645 1164 257 aa, chain + ## HITS:1 COG:Cgl2830 KEGG:ns NR:ns ## COG: Cgl2830 COG0204 # Protein_GI_number: 19554080 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Corynebacterium glutamicum # 23 256 45 271 292 97 32.0 3e-20 MSAVSGFYTFAKGVLTPIMTPWIKFTVTGEENLPTEGGFLLVPNHLSNVDPLCLCWYFMK RDTAVRFLAKKSMFSVPVFGWIIKGMGLIPVNRDSNPSAVLAPTREALKAGEVVGIFPEG TLTRDPDQWPMEFKSGAARLALDTGVPVIPVSQWGPQDIMAPYNAKGIDMRPGRRIAYHF GEPVDLSDLMSPAGSEDHEAVNEATTRISDAVRAGVGKLRGLPVPEQVWDPATQAGPWWE EELAKNAKKAKKVRKKG >gi|292821366|gb|ACYT02000018.1| GENE 3 1642 - 2040 364 132 aa, chain - ## HITS:1 COG:no KEGG:cauri_1519 NR:ns ## KEGG: cauri_1519 # Name: not_defined # Def: putative secreted protein # Organism: C.aurimucosum # Pathway: not_defined # 5 131 88 218 219 76 37.0 3e-13 MRSDDPAKALALTGIPAASHEGFKRVVLEFSGEGTPGVWRGAWTDDAFEQGRGLPIQVEG GAVLELIINGTPMTASENHYPGGTHTRVGDLDVVSDGTFEDNTHVVIGAPTARQFQIGFL SDPVRTVIDIRD >gi|292821366|gb|ACYT02000018.1| GENE 4 2360 - 3379 1141 339 aa, chain + ## HITS:1 COG:Cgl1288 KEGG:ns NR:ns ## COG: Cgl1288 COG0240 # Protein_GI_number: 19552538 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Corynebacterium glutamicum # 3 332 1 332 332 271 49.0 2e-72 MSMTTAAVLGTGAWGTTFAQVLADAGVTVAMWGRNADTISFINGGENPTYLPGIALSERI SATTDIAEAVSGRELVVVAVPVKAVRATLSSARGSLSPDVALLSLAKGLELGSLKRVDEI IAEASGMPSSRIAVLSGPNLSREIADRQPTATVVAAHDVELAKEIAKACHNSYFRPYVST DVVGTEMAGATKNVIAVAIGAAEGMGLGINTRSTLITRGLAEMTRLGTALGADPATFAGL SGIGDLVVTCSSRLSRNFSLGHRMGTGMGLAEALALSPGVVEGVASASPILQVAASVGVD MPITGAVVEVVEGRASIEDMGRMLLARPQKMDGWKIELV >gi|292821366|gb|ACYT02000018.1| GENE 5 3430 - 4566 1306 378 aa, chain + ## HITS:1 COG:MT3059 KEGG:ns NR:ns ## COG: MT3059 COG1181 # Protein_GI_number: 15842537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Mycobacterium tuberculosis CDC1551 # 13 377 17 372 373 302 48.0 7e-82 MTAFSRPRVLIVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPS ALEFKDGKGQCVTAGSTRVALTPGEGNLVELSYDGDPDASDSRVVGVEDLGHVDIVFPLL HGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGRWELVTARQW DTDATACMDRIEGLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAANHDPRIIVEAST SGREVECGVLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDIVGLSCPADVAPEYADR IRATAWRAFDALECEGLARVDFFFDEATDSVIINEVNTMPGFTPISMYPQMWAASGLSYS DLLNELLTEAGERPLGLR >gi|292821366|gb|ACYT02000018.1| GENE 6 4616 - 5533 1014 305 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11195 NR:ns ## KEGG: HMPREF0573_11195 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 6 305 5 302 302 314 49.0 3e-84 MTAHPKVTLVTCTSMPNLFKGEEGLLDELAARGCDPQIKVWNDPDVDWSEAGMVVVRSVS DYAADRPAFLEWTKQLRRVQNSTDVLNWNTDKHYLRELSAMGLPTIPTNWLEPEQNLSKH QIHTRFPAFGEFVVKPAVSSGVRDVGRYTTVDTRQRQAAMRQVQGLLGEGRSVMIQRYVE EIDLHGEISLVFFNGLVSHAVEKRSALHPASVTDPSVHEAVVTAEAADSLAWKWGEEIRR VLHGYVRSRLGHDEQFLFNRVDLVPDGKGSFLVMEVSLVDADLYLGSTPGALGNFADAIS ARAHW >gi|292821366|gb|ACYT02000018.1| GENE 7 5883 - 6134 142 83 aa, chain + ## HITS:1 COG:no KEGG:Gbro_0739 NR:ns ## KEGG: Gbro_0739 # Name: not_defined # Def: transposase IS3/IS911 family protein # Organism: G.bronchialis # Pathway: not_defined # 1 83 9 92 104 68 58.0 5e-11 MELRERVTRMALEARADPARRKGAIERVGDRLGNPAALRTWVRAVEQGGRNERGEVSDQE ARIRGLEAENRELRRADEILKAA >gi|292821366|gb|ACYT02000018.1| GENE 8 6488 - 6781 57 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALHRLCGATPVVWCYTRYVALHPIRMGAMPTDRVYRARRQERSGNLESHNTKDNGLNAP TQNPGLDGPASARDAQAFENVTRCDMFDQSDARGVCL >gi|292821366|gb|ACYT02000018.1| GENE 9 6812 - 7870 1648 352 aa, chain + ## HITS:1 COG:SMc00680 KEGG:ns NR:ns ## COG: SMc00680 COG1064 # Protein_GI_number: 15966445 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Sinorhizobium meliloti # 6 347 6 344 347 350 49.0 2e-96 MPSVIAYGCDDATTQFHPLQIDIREPGEGEIYFDVVYAGICHSDIHAARGEWGPVSYPLV PGHEFVGTVAKVGPGVTKFKVGDRVGVGCMVGSCGTCEMCESDYEQWCTSTPGTLWTYRA DAEGNPTTGGYSRGFTVREDFALHVPESLDFSACAPLLCAGITTYSPLKHYNVGPGSRVA ILGMGGLGHVGVQIAKAMGAEVSVISHGRSKEADARRFGADHFYATSEEGVLESLRGSFD LILCTVSADGLDYAGYMAALRPYGVFVDVGLPTEPISLPLRAFVNGGKSFAGSQIGGIAE TQEMLDFCAAHGVIPQVEMISGEDITQAYDNIVDSRVRYRYVIDTSTFPETA >gi|292821366|gb|ACYT02000018.1| GENE 10 8483 - 8701 185 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISSEDVSRVAAPTPTTPAAWGYSGVRSKILLLHFVKDLQHVTPPFVTKFHNSFIVCDIS VTCNHFSGNHSP >gi|292821366|gb|ACYT02000018.1| GENE 11 8716 - 8955 231 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189639|ref|ZP_06608356.1| ## NR: gi|293189639|ref|ZP_06608356.1| hypothetical protein HMPREF0970_00675 [Actinomyces odontolyticus F0309] # 36 79 1 44 44 85 100.0 1e-15 MTKKSYADPWVADVLPSASATIRLQLPQCSKKDMIMSIDVDEEATFQLRSGLYLLPQGDD EIFVRDGSRAAFSKVIRDN >gi|292821366|gb|ACYT02000018.1| GENE 12 9061 - 9717 115 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189640|ref|ZP_06608357.1| ## NR: gi|293189640|ref|ZP_06608357.1| hypothetical protein HMPREF0970_00676 [Actinomyces odontolyticus F0309] # 1 218 28 245 245 408 100.0 1e-112 MQRLVEDEVICPLSEKKECSVALIGEGSVGETLLKLLSDMEGISVTAGDAEALSTGQFDT VLSMSDLFIVATNVLRPVLNHTANEIAHELSIPLPYVFADGPEIQVGPMVYPGETACYTC FEVQDEGARHLRDEFLVFKDNLARYPEDKSVSAPVAAMASAWAALAIEDAQEKTMSRFAE RVVRVETNRFEVVSHRILQLPRCPSCSRYRPDLQHAFL >gi|292821366|gb|ACYT02000018.1| GENE 13 9451 - 9726 136 91 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MITSEEGVLQIRAVTTTGRTPGELKDSMANNLEPIGFYTYNTLSKTRHSLLLCIFYGQSR PCRCHRSYWRTNRLIFRIAGKIILKDQKFVP >gi|292821366|gb|ACYT02000018.1| GENE 14 9728 - 10531 153 267 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189641|ref|ZP_06608358.1| ## NR: gi|293189641|ref|ZP_06608358.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 102 267 1 166 166 310 100.0 8e-83 MQNEVTNTTECLVVDPSFDHGLEQTVLPGTGLRLVAPTRRDSYQNRLADAEGDVAEMYQV NARWRRGALDDLPDVEEQKSLRKWFLESGRVFDLSGEREGPMVSLDTLPASLGEALTVLA RVGLQSGLLFAADVLVIVDEWVHLLPAGEEFLVRTRLFDDVRRRELVESVSVDVRHAFMG APVFLAVVLAPQRLQVTHGPRGYRNALLETGMLVGNLGTIFAEHGLNITIAVDFVDTTVD RVLDQDGVERFVVALASITGSNSNGDQ >gi|292821366|gb|ACYT02000018.1| GENE 15 10960 - 11487 293 175 aa, chain + ## HITS:1 COG:PAB1763 KEGG:ns NR:ns ## COG: PAB1763 COG0778 # Protein_GI_number: 14521107 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Pyrococcus abyssi # 27 156 54 183 196 104 40.0 7e-23 MELAAFLRMSCGSKGVARAYQRRDIPRRVFASAGGLQSVDIQVFVQNVEGIEPGRYHYDP LEHSLVLAEIGDFRLPIVATTLGTDWLMHAQAVIAIIGNFNRVSWKYGSRGYRYMGLDAG NVCGQMYLAGASMNLAINAVAAFRDDALNSLLRVDGRDHFAQLLVSVGNKPGIRA >gi|292821366|gb|ACYT02000018.1| GENE 16 11484 - 12182 593 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189644|ref|ZP_06608361.1| ## NR: gi|293189644|ref|ZP_06608361.1| CAAX amino protease family protein [Actinomyces odontolyticus F0309] # 1 232 1 232 232 361 100.0 2e-98 MTASSIVLTISVGILPCYGIMMMIIDRVSKKLLFLEPWVVDRAAVVYLVFLAIGNVLVVV RGFIPIDAIVFNAWWRALLSILLAPVVAIVPYLFELLLSSAIGSAERATLAMAVFIRDAK ASVDALIKRRGIWWTVAIGTALMEELLFRGALLHAVWSEHGVLFAILANSIIFGLHHVAF GINAILAKMIAGFLWSLLVLLGGSIIAAVVAHLFFQYLVWRRSQRIRGCHAV >gi|292821366|gb|ACYT02000018.1| GENE 17 12172 - 13182 430 336 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189645|ref|ZP_06608362.1| ## NR: gi|293189645|ref|ZP_06608362.1| hypothetical protein HMPREF0970_00681 [Actinomyces odontolyticus F0309] # 1 336 1 336 336 632 100.0 1e-179 MLCDFHATGAGYVASPVDGSLCDIVSIATMMADPVLPLRRLGVSVEYAAWAKAQGCQHLW GGAWIDEKPSGLRNTIPAEVSEAVISGMARLGMRIMCVGSTCGGEDLRRLLAVARDTGLS VAIEPHPSTLDTLPSLPSGSTIESLRVAAVAIGARHGYRVGSAPANAQRTLLELGELPCG ADEVIARELIAWGIPLTPLMASTRVQADLAALTSAPGLDEMSRIMPHHARILRLRAPGGM AMGQREAMKHLGMVPLSKCDREVLAKGWALLRSVLGLVASSTWLVGGSGAPGLGMHPRYA LDEEQRIWRDCGIPENHIRRSFGDETASLLGIRRNA >gi|292821366|gb|ACYT02000018.1| GENE 18 13179 - 14063 248 294 aa, chain + ## HITS:1 COG:TM0389 KEGG:ns NR:ns ## COG: TM0389 COG1131 # Protein_GI_number: 15643155 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Thermotoga maritima # 1 225 12 237 301 156 36.0 4e-38 MNVFEAQGIRKTYGETKAVDGVDLSLAAGEIVTILGHNGSGKTTFLECVEGLRKPDAGTV TLCGKVHAYGSPLPEGVGVQMQQEQLPPRIKVREALSLFASIYGVDGPPSDLMQAMTIET IAGKRFDTLSGGQKRRVSLVLAFMGDPRIVFLDEPTAGLDPEARSALVAVLKDRRDRGLT VLATLHEVDHAADLADRILIMARGRVRREGTVDSLMSTLGADACVVLPRGTDQAPWQAAG HTQLSPEGALLVFGDRPTLERAVQNIPSGRTAVLRPTNLGDVVTREAQTAEEEK >gi|292821366|gb|ACYT02000018.1| GENE 19 14282 - 14812 452 176 aa, chain + ## HITS:1 COG:no KEGG:SRM_00927 NR:ns ## KEGG: SRM_00927 # Name: not_defined # Def: ABC-2 type transport system integral membrane protein # Organism: S.ruber_M8 # Pathway: ABC transporters [PATH:srm02010] # 1 145 105 249 276 73 34.0 3e-12 MSIHIAENRGQGVLKRYRLSPVPSSAYFIAQFCTAAVVVAISIVALAVVTLVVYGPAPHA NWPMLLVVSAISLYVTMSLGLCLGGLAMPVRSVQVVSAAMFFLMFFSSGAALPRESFPDW LQTVSEFNPLTILNQALMDAYLGQQCSWWPLVFLIVATVILNLITVRTFDWEGSNS >gi|292821366|gb|ACYT02000018.1| GENE 20 14716 - 16311 1138 531 aa, chain + ## HITS:1 COG:MJ1094 KEGG:ns NR:ns ## COG: MJ1094 COG1944 # Protein_GI_number: 15669282 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanococcus jannaschii # 137 439 67 315 385 63 27.0 9e-10 MFVVASSLFDSCYRHFESNHGSNIRLGRKQLVISSYQLPTITSGVGDDSMIVRTFNRRRP IIKPTLNDDEYHALVETESLYAPSAFIRLLTTYFRPASGAGLHVGHGQYFDFDHISSKLL GVAGLNSSYASQVYGGGKGLDLHDMYVSSMGEGIERVLGSFAFLSWADRLQNGTRREMED RGKHCLGPEDLPIFSEAQFSDPHFGFDRWDDNTTMGWIPGTRLYSGETIWVPAQLVLFIY YRPDDEPLIGLAPSGGLASHITTDRAVYHALDELIERDAVNLRWHARVPLDRIVMDVEPR DAKVRRHLSELDRGIGKPEFYLQNLDFFEFPVLTAIEFDNWLEDLRYNAGGGVGASPDAA MRSALGEYCQSERSLRICQLADNWQFEIAFRRLFGIRADAKPYEFDRFVQAITFYGYQQN QKKADWYFNGGGEVKLSELYARCDAAEPDPVKRIHLAMQSRGIDPIMFDFTPRAFTQTKV WKAFIPELSQPYPPQAPALGHPWYLNCPVDAGYRDHPIDQADLLQDPLPYP >gi|292821366|gb|ACYT02000018.1| GENE 21 16323 - 16793 426 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189649|ref|ZP_06608366.1| ## NR: gi|293189649|ref|ZP_06608366.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 85 156 1 72 72 101 100.0 1e-20 MLDPVESSMTTSAHSKASPHGQIAPLMTLASATAAVRVGTLAALIPGLVAAHAGTGTWLT LALHIAGALATVVVILVQSRTGLLMAVLYTGYSTVVLALDAPNGALSSVMWIVGGLTLLM TLASSLRVRRKQSLLWPAWTALLGVIVGFVVLSILH >gi|292821366|gb|ACYT02000018.1| GENE 22 17498 - 17779 322 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509336|ref|ZP_02044978.1| ## NR: gi|154509336|ref|ZP_02044978.1| hypothetical protein ACTODO_01861 [Actinomyces odontolyticus ATCC 17982] # 1 93 13 105 105 135 96.0 6e-31 MPSYRTIMTVTTLAPGRAPEEIEAAARSVTRLESWDIAIASGQPRVTARFTATDDTEARA IHGEIAAAVRLVADVPRARLAAVVRGRSHYLAP >gi|292821366|gb|ACYT02000018.1| GENE 23 17998 - 19317 2289 439 aa, chain + ## HITS:1 COG:MT2537 KEGG:ns NR:ns ## COG: MT2537 COG0544 # Protein_GI_number: 15841986 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Mycobacterium tuberculosis CDC1551 # 1 419 1 438 466 290 42.0 3e-78 MKSTVETLEPTKVRLTVEVPFEEMKSEMDKAYKEIAGQVNIPGFRKGHVPPRIIDQRFGR AAVIEQVVNQVLPGYYSDAVNENDLRPMAQPTVDVTEIPNVTGPQGGQLVFTAEVDVVPA FELPEIDEKLVVEVEPTEVTEEDVEKELEDLRGRFATLKTINRKAKTGDFATIDLVATID GKQVDSASDVSYEIGSGSMLDGQDTALRGTKAGEEVTFTSKLKGGEHEGEEAEVTITIKA MKTRELPKADDDFAQMVSEFDTIDELKEDLKKQAAQSKESQQALAARDALIDLLLDKVEI VLPESAVDHQVEHRVGEDAKPKAKKEAREAVEKEIRTELLSEALAKKFDVQVSQQELIDY AIQMSQNFGIDINQLFSSSQQMANVVADLGRSKALIEALKVVTVKDANGADVDLSKFFGT DPAAEEGAEIITEVADEQE >gi|292821366|gb|ACYT02000018.1| GENE 24 19492 - 20142 776 216 aa, chain + ## HITS:1 COG:CAC2640 KEGG:ns NR:ns ## COG: CAC2640 COG0740 # Protein_GI_number: 15895898 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Clostridium acetobutylicum # 34 204 20 190 193 231 63.0 9e-61 MGRRGPRTDEEVRVSVHNTGAAGEGSQLGLGDSVYQRLLKERIIWLGGEVRDDNANVICA QLLLLAAEDPDRDIYLYINSPGGSVTAGMAIYDTMQYIKPDVVTVGMGMAASMGQFLLTA GAPGKRYITPHTRVLLHQPLGGAGGSATEIRINADLILGMKKELASITAARTGKTVEQVE ADGDRDHWFTAQEALEYGFVDRVIDSPQEIGTRGEN >gi|292821366|gb|ACYT02000018.1| GENE 25 20142 - 20786 973 214 aa, chain + ## HITS:1 COG:Cgl2359 KEGG:ns NR:ns ## COG: Cgl2359 COG0740 # Protein_GI_number: 19553609 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Corynebacterium glutamicum # 13 212 6 205 208 256 69.0 3e-68 MSTQPYFEAVARQMPQARYVLPDFEERTAYGFRRQNPYTKLFEDRIVFLGVQVDDASADD VMAQLLVLESQDPDSLITMYINSPGGSFTALTAIYDTMQYIKPQIQTVCLGQAASAAAVL LAAGSPGKRLALPNARVLIHQPAMEGMQGQASDIQIVADEIDRMRAWLEDTISKHSGKPV EQVRRDIERDKILTAPQAAEYGLIDQVLESRKAL >gi|292821366|gb|ACYT02000018.1| GENE 26 21027 - 22286 245 419 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 157 382 258 432 466 99 32 7e-20 MARLTDGAELLKCSFCGKSQKQVRKLIGGSGAYICDECIELCNEIIEEELGAQQSSSSAT PLPKPREINEFLNTWVIGQDRAKRALSVAVYNHYKRVRSREVGNAEDMLGTKSNILLLGP TGTGKTHLARCLARLLDVPFAIVDATALTEAGYVGEDVENILLRLIQEADGDIKKAEKGI IYVDEIDKIGRKAENASITRDVSGEGVQQALLKIIEGTVASVPPTGGRKHPHQQFLEIDT SGILFIAAGAFAGIEDIVKARLGRRSTGFGSELKSTSEMGDLYEAVSAEDLHKFGMIPEF IGRLPILTSTKELTEEDLVRVLTEPSNSLVRQYQHLFELDNMDLEFTHEALLAIAARANE RKTGARGLSSIMEQTLSDLMFDLPSRDDVARVVITRDLVEGVGPAELYPEPSSEGKRSA >gi|292821366|gb|ACYT02000018.1| GENE 27 22333 - 22689 538 118 aa, chain + ## HITS:1 COG:AGc4890A KEGG:ns NR:ns ## COG: AGc4890A COG1605 # Protein_GI_number: 15889952 # Func_class: E Amino acid transport and metabolism # Function: Chorismate mutase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 112 6 98 105 122 68.0 2e-28 MAQRDEASVAASADLGVSGVPAELADARATIDNIDAALVHILAERFRCTQRVGHIKARLD LPPADPAREARQVERLRTLAASSGLDPDFAEKFLGFMVREVIRHHEDIKAEYNEGPRL >gi|292821366|gb|ACYT02000018.1| GENE 28 22912 - 23937 715 341 aa, chain + ## HITS:1 COG:BS_lacR KEGG:ns NR:ns ## COG: BS_lacR COG1609 # Protein_GI_number: 16080470 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 331 1 328 330 171 30.0 2e-42 MVNLGDIAKATGYSKATVSRVLSGDPSFTAKESTRHRVIQVANELGYALRSSRSGIPQMM AVLENFDATRGPQDTYFADVRDALRECAVKNMMSLSFFSDVDSLVEAGDDFAGFVSLGPA PIASEDLERLHEALAHGVFIDINPAPTLFHSVRPDLQQTVIEAIYALREQGRERIAFIGG DGHMMGSHVFARDPRTFAFDEWARLLGMPTDGYVYASGPFTVDNGRDQAEALLDAHAEAM PDAILVAADPLAVGVIQALVARGVRIPEEVAVLSIDNLEVCQYTAPTLSSYAIERSELAE TALMLLSDAIVGRFRHKHHVLLSTRLVPRQSFIPVEDTPRN >gi|292821366|gb|ACYT02000018.1| GENE 29 23998 - 27042 2287 1014 aa, chain - ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 13 1004 8 1004 1014 724 39.0 0 MFHTPHVSTPTSAWLSDPQTFAVNRLPARSSHDSDTHRQSLDGTWEVALTTASRICLVSP TDCFLTEEACDLPVPSTLEAEGLWPPAYVNIQMPWDGHANPTAPNFPEDCRVAVYRRRFH LDDAVLESLKARGSVRLRFEGFATALYVWVDGAFVGYCEDGYTASEFEVMQALNSDSGTE EHELVVACYEHSSASWLEGQDSWRFHGLFRSVYLIALPVCHIENLMVDTDYDAATGMGTL DIKADICGIDADVTISAELTDRSATVVWSHRSPTREPVIELSGVLSKICPWTAEDPALYT LSVALLDADGHTHEVVSQRVGFRRFEIVDGVFTLNDQRLIFRGVNRHEFSPYTGRTMAME DMVTDVRLCKQLNINAIRTSHYPNDTRFLDLCDEYGLYVIDEANLETHGSWCTPGDIPTP ETAIPDSKMEWENACVDRVESMVRQDRNHASVLIWSLGNESYGGEVFRSMYRRCHELDEA RPVHYEGVTWDREFDDASDIESRMYAHPDAIEEYLRCEPAKPYLSCEYMHSMGNSVGGLQ LYTDLERYPEYGGGFIWDFIDQALYHEPTAGSGGEFLAYGGDFGDRPCDWEFSCDGIVFA DRTPKPQAQAVKALYAPVTLTPSAQGIRLGILTLPAPLEHLRVRARVLADGEVAWEAEYE AASASGPEGLVEVRWPSELLGETAREIVLEGTLYLAAPTAWCEAGHVVAVGQSIHARPEP PTEEIEGEADFTLGRWNVGMRHGESEALLSRTAGGIVLWKRGEEAMVLFPPRLTTFRPLT DNDRGAGHGFERACWTTAGAYARCVDTRVEPREGGVVVTYDYQLASLDNVIVPVRYELRT DGTIRLTATYPGAQNLPTMPCFGLEWALPSSIDRLRFYGLGPVEAYADRLAGANLGVWEL SAAQGLAHYAVPQECGFHPGVRWCDATDANGHGLRVQARANLGISLLPYSSAQIENARHW WELPEPSQRTATYLRLLSAQMGVGGDDSWGSPVHDEFQIDATHEQIVDVTLSLL >gi|292821366|gb|ACYT02000018.1| GENE 30 27230 - 28672 1877 480 aa, chain + ## HITS:1 COG:ECs5102 KEGG:ns NR:ns ## COG: ECs5102 COG2211 # Protein_GI_number: 15834356 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli O157:H7 # 57 450 37 418 469 118 24.0 2e-26 MAHEQGTNKSWVSRICYAIGNLGQAAYYNALSTFFVTYYAAQTLFRDYEDSDAKAMIAII TALVFIIRIVEIFIDPLLGNLVDNTNSRFGRFKPWQVIGGVGSSILLFAIFTGLFGLVNV NKGVFIVVFVIVFVVLDVLYSLRDISYWGMIPALSSSSQERSVYTALGTFTGSIGYNGVT AIVVPVVAFFGALAGAGSESQAGWSGFGALIAILGIVTCLAVAFGTREEESVLRDPADKS NPLQAFQAIGRNDQLLWVSLSYVLYSIANVATTGFMIYLFKFVLQKPDIYSVVGIIAFLI GLAVTPLYPVINRHVPRRYLYLGGMAFMACAYILFIFFSTNLVVVFVALVLFYLPATCIQ MTAILTITDSVEYGQWKTGKRNEAVTLSVRPMLDKIAGALSNSIVGFVAIVAAMTNDVDP SLLTSSNIETFKAAAFYVPLVVVVLAFIVFARKVTLTEAKHGEIVSILEENMASASDKEG >gi|292821366|gb|ACYT02000018.1| GENE 31 29070 - 29546 670 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509326|ref|ZP_02044968.1| ## NR: gi|154509326|ref|ZP_02044968.1| hypothetical protein ACTODO_01851 [Actinomyces odontolyticus ATCC 17982] # 1 158 1 158 158 243 100.0 4e-63 MKNRAQTSALAVIAITLAAALSACGSTGSTGSSASSTKSPSSAATNAASNDPNLVFAQCM REKGFDVPDTGLTPEQIKDNSDAFNSALNECMTKVSGLTGDDDLTKDPNGREALVKGAQC LRDLGYDVKDPEPGKGVNIQDIPQDALNKCFGNPGGAK >gi|292821366|gb|ACYT02000018.1| GENE 32 29585 - 30619 1306 344 aa, chain + ## HITS:1 COG:no KEGG:Ndas_4786 NR:ns ## KEGG: Ndas_4786 # Name: not_defined # Def: peptidoglycan-binding domain 1 protein # Organism: N.dassonvillei # Pathway: not_defined # 14 342 51 375 376 160 36.0 4e-38 MVAVAGMTLSACLGAQAEADAPQSFNGATATVTRGDLVGETTVQGSLHYADSYTLKSAFE GVVTALPTPGTTLTQGSHVYTVAGNNTYLLHGSTPAWRAFEEGMSDGEDVTQLETALSEL GYFEATPNAHFDWNTIAAIKRWQKALSLPQSGSLPLGTVLFAPEDLRIGALKARVGTSAT METELFTASSSRQVISANLKLSDQALGVVGNSVTVRLPGSATTTTGTITSVEPPREKESE EGSKETNKERIIPITVTPDDTSALEGFQEASVSLGLTSETRKGVLSVPLGALVALSTDQF GVEVVDEKGEVRRVPVTVGLFAGDRVEVSGDEIAEGQRVVVPNR >gi|292821366|gb|ACYT02000018.1| GENE 33 30616 - 31314 319 232 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 222 1 217 305 127 33 2e-28 MSHILQLTDVHRSFGSPPVHACNGVSLSVDEGEFVAIVGPSGSGKSTLLNLIGTLDRPTS GSVCINGTDVSSLRDTELSGVRSSLIGFVFQQFHLTAGVSALDNVADGLLYRGVPRAKRR EAAREALTRVGLGHRMDHKPHQMSGGERQRVAIARAIIGHPALLLADEPTGNLDSRSGAS IVELLRELNDAGTTIIVITHDNDLAASLPRQIAIRDGEIVSDSAHSGGGHDE >gi|292821366|gb|ACYT02000018.1| GENE 34 31304 - 32512 1269 402 aa, chain + ## HITS:1 COG:Cj0607_2 KEGG:ns NR:ns ## COG: Cj0607_2 COG0577 # Protein_GI_number: 15791967 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Campylobacter jejuni # 21 402 4 394 394 118 26.0 2e-26 MTSKKNSGAGRSALRASDVARLGLTGLRARPMRAILSALGIAIGIAAMVGVVGVSASSQA RLQEQLRALGTNMLTARSGADLSGQDLILPEDSVGRVRMIPGVTDAASTSTLNGISVYRS RLSDPNATGGILTMAADTNLLKVISGTMKSGSWLNDATARYPGVVLGSKAAALLGVVEPG TQVWLGGRSFTVLGIMEHAPLAEELDNAALIGVPAANSLFDAGKTPTTIYERSTEAQVET VRELLGPTLAPQGATGLKVSRPSDALAAQNAADQTLTTLLAGVGSIALLVGGIGVANTMI ISVLERRKEIGLRRSLGAKRGHITVQFLAEALLLSFLGGLAGCLIGAGVTWGMCYVYGWP PTLHWWVIAAGLGATLLIGAVAGLYPAIRAARTPPTAALASQ >gi|292821366|gb|ACYT02000018.1| GENE 35 32619 - 34502 2382 627 aa, chain - ## HITS:1 COG:ML0887 KEGG:ns NR:ns ## COG: ML0887 COG1022 # Protein_GI_number: 15827409 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium leprae # 26 621 3 597 600 451 44.0 1e-126 MSTINTPASSNDDETTPAQTTTEALEWHAPVLVRVDEHTTILHLLKERVQRGATRPLILR KIGIGDTWRSITAREFYDEVQSVAAGLIARGLEPGDRVAIMSRTRYEWTLLDFACWAAAL VPVPIYETSSIDQVAHVLNDADVHLIITETVSMAEIVRAAAQREHRTNTDVLSLDSEAIE TLIAEGAATPRDRVAARADALTKDDIATIVYTSGTTGTPKGTVLSHENFTNLCLNAHAWM PEIAAGKDSRLLLFLPLAHVFARFLQVFQISGNGVLGHASNIKNLLNDLASFKPSYLLVV PRVLEKIYNSADTKASGPKRKIFRWAAKVAIAYSRALDTEEGPSASLKAQHALADRLVYQ QIIRLVGGNADYIVSGGAPLATWLAHFYRGVGIPVLEGYGLTETVGPVSVNTPRLSKIGT VGPALPPMSFKISDEGEILLKGPSVFQRYHNDPGATAACFTEDGWFRTGDLGSLDRDGYV SITGRAKEIIVTAGGKNVAPAALENPMRSHPLISQVLVVGDQRPFVAALITLDAEMLPDW LAAHSLPPMSVAEAATNVEVLASLEKAVASANEHVSRAESIRKIKVLTTDFTEANGLLTP SLKVKRLEATRRLAPIIDEIYGGPVQD >gi|292821366|gb|ACYT02000018.1| GENE 36 34662 - 34892 263 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189664|ref|ZP_06608381.1| ## NR: gi|293189664|ref|ZP_06608381.1| toxin-antitoxin system, toxin component, RelE family [Actinomyces odontolyticus F0309] # 1 76 1 76 76 135 100.0 1e-30 MSALTDYIEQLPDFPLRGQAFSLHHPGMRIIGFRKTLLIAFLVTDDGVVILSVLSTRQSR LTLEEALTQALESFQR >gi|292821366|gb|ACYT02000018.1| GENE 37 35003 - 35299 357 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189665|ref|ZP_06608382.1| ## NR: gi|293189665|ref|ZP_06608382.1| toxin-antitoxin system, antitoxin component, PHD family [Actinomyces odontolyticus F0309] # 1 98 1 98 98 127 100.0 2e-28 MSNATLSDFRQNQAQYIAAAQVEPVELRSRGAQTRAVLVSPAFYEEAMEALEERRDRRTR DELDRWLREDLAQAVRDYEENPDDVYTLDEIRAELGLK >gi|292821366|gb|ACYT02000018.1| GENE 38 35353 - 35601 261 82 aa, chain - ## HITS:1 COG:BS_ydhG KEGG:ns NR:ns ## COG: BS_ydhG COG5646 # Protein_GI_number: 16077642 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 79 44 122 123 78 44.0 3e-15 MFTHHGTYIIGFSAASKHMAMAPERATMIRFEPVMRERGTDFGKMFARRPRNKPFDYELF DAFIQDQLTDKRDVTSFWRPQS >gi|292821366|gb|ACYT02000018.1| GENE 39 35961 - 37625 1145 554 aa, chain + ## HITS:1 COG:no KEGG:DEFDS_0894 NR:ns ## KEGG: DEFDS_0894 # Name: not_defined # Def: hypothetical protein # Organism: D.desulfuricans_SSM1 # Pathway: not_defined # 36 538 43 564 578 137 27.0 1e-30 MSLNSAVRYEAFDESVKALRQDALKDSFFANGDGPWTVIYDEWSIKGRANGGQFIALSQL NMRERVMRDVGWDIRKGEGIPGFVDDGTEVSYLKSGSLPEFEPLVVVQNFFGVVPDRLNI SEDFRFLMRLWPDPKSRNYYEIQESGDKELAIRISGEKIEVRTRLLKRYLAARQLDAVLY IDSNVGIDYDGDLADLADFEEEAFSFESLTCFSRDVRRDRSQSGRIWTRLLAKRILKAPP REKCGMWPWDEIELGEYPEFIIGENEFAEAVSWTCSPESLRNYYGKNPDAPHYYTPVYFK PEVLKRYYEDDGCEVRDGYLSCGNQWGVSIDNGCLSYVSVSLGDIGRDIPQSHWNHWKAY NIAPIGDMSEEAIRCSFFNQSVKSRNPEHIFKRVYATLQEEWEKGWGWRLHRKAEGLDAG VLARLHIPVNESEAEFRAQSLNLALVLVDLLNEKRLIQGMDKVDNEKGIDKLSRFLESNK YEYVERDISLLRKVQLMRSRFAAHSSGTKGRVCLEEELGDRSYREYFIDVIDQTTQMLLD LKRFAASHASASGS >gi|292821366|gb|ACYT02000018.1| GENE 40 37748 - 40501 3602 917 aa, chain - ## HITS:1 COG:RC1053 KEGG:ns NR:ns ## COG: RC1053 COG0525 # Protein_GI_number: 15892976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Rickettsia conorii # 36 875 14 789 812 597 38.0 1e-170 MGQTVHDSDGDNSIMAMNTRAQAPRVPDRAAPEGLEAKWGEAWESQGTYAFDRSATREQV YSIDTPPPTVSGSLHIGHVFSYTHTDVVARYQRMTGKSVFYPMGWDDNGLPTERRVQNYF GVRVDATLPYDPDFEPPHVGGDGKSIKARDQKPISRKNFVELCERLTQEDEAQFEALWRY LGLSVDWKQNYQTIGARARKVAQAAFLRNLARGEAYQAEAPGLWDVTFQTAVAQAELESR EYPGFYHRLAFHITNAEAAAKAAAAGAPVEDGADVCIETTRPELLAACVALIAHPDDERY KPLFGTTVASPVYGVEVPILPHPEAEMDKGAGIAMCCTFGDTTDIDWWRDLELPLRAILR KDGRIITETPEWITTDAGRAAFEEITGKTTFSAREAVVAALRESGELKGEPTKTMRQTNF FEKGDKPLEIVTSRQWYIRNGGRAWTNPASGKDLNEELIGRGRELEFHPDFMRVRYENWV KGLKGDWLVSRQRFFGVPFPLWYRVDADGQVNYDDIITPSEDQLPVDPSTDVPEGYTEDQ RGVAGGFVGELDIMDTWATSSLSPQLACGWLDDEDLFARTYPMDLRPQGQDIIRTWLFST VVRANLEFGALPWKHAGLSGWILDSDHKKMSKSKGNVVTPMGILEKYGSDAVRYWAASAR LGLDAAFDEQQMKIGRRLAIKVLNASKFALTMGGEGAAIDLDPALVTVPLDRSVLAALAS VIDEASAALAAYEHSRALEVTESFFWTFCDDYLELVKERAYNRDGAWDEASAASARAALA IVIDNVVRLLAPYLPYVTEEVWSWYREGCVHVAPWPLSSDLAGAQGDPSVLQAASSALIA LRRVKSEAKVSPRTPFLAVTVRAPQAQVEALESVKGDLEAASKAVGALTVAASEDAEATE ASIESFELGEAPAKRKG >gi|292821366|gb|ACYT02000018.1| GENE 41 40684 - 42039 1323 451 aa, chain + ## HITS:1 COG:Cgl2768 KEGG:ns NR:ns ## COG: Cgl2768 COG0624 # Protein_GI_number: 19554018 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Corynebacterium glutamicum # 5 448 2 440 441 437 53.0 1e-122 MTTQSLGEQTVDLLARLVRLGCVNDLTADSGGEERAADLLEELFEGLPVSIDRITPHPGR TSLVVTVEGADPRSPGTPLTLLGHTDVVPVDESKWTRDPFGAQIEDDVMWGRGTVDMLHL TAAMAVVTREVARRAQDGNPLARSLVFVAAADEEARGGLGVPWIGEKRPNALPWHAALSE MGGAHIFGRRGGDSIVVVVGEKGAAQRRLHIRGDAGHGSVPLGRTSAVERLAQVSAALSA ARWPTATDEVWAGFVRAFEFDETTENSLINGTYEGDYSEFEDLAAFAHAISHVTVAQTVA HSGGPINVLPSHATLELDIRTVPGVDDDDVDAAIAAALGDLAEHVTIERLLSEAATASSI DTDLYLAIEAALKRRYPGASVVPVLFPGGSDLRVARRLGGIGYGFGAVDSGASLGQVYSQ LHAHDEHIALADVRATAEVLHEVVTSYLTDV >gi|292821366|gb|ACYT02000018.1| GENE 42 42157 - 43746 2071 529 aa, chain + ## HITS:1 COG:SMa0466 KEGG:ns NR:ns ## COG: SMa0466 COG0747 # Protein_GI_number: 16262696 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Sinorhizobium meliloti # 34 522 32 527 534 206 28.0 1e-52 MHIARIPRTAATLASVAAMMCATLAACAPSGSGAAQSASREGTIAVGLPGSLSTLDTAHE TGIINYYVAQVVSEGLLAVGKDGQLIPAIASAHHTDDAQTWVFDIRPDALFQDGNPVTID DVLFSIDIAKDPDKSPSSAVYWPAGVQAEQSGDNQITITLPAPAVNFGWTVTANGGLWIT EKSFYEAAASYGSSADLIMGTGPYKAVSFQPDSKAVFEKSGTWWGGDTPAQTIEFDFFSD ENARFLAQKNGTIDIATQLPIDQVLQFQGIGSVSVLTESDRSYVGLTFDQNVEPFDDIHV RKAIAHAVDRSTIVSSILKGQATVATGIEPPDQLGSEIGEQAAAGAQAGLPIDSFDLDAA RAELAQSKVPGGFDAELTYPSSIPDLGSAALAIADNLKQIGINLTVTSKPIEEWISEVGS GAYGLSYMSYTSTTGDPGEVAGWLLGPDNPARYENEQVQGLIASQATQTDPSKRVTDIVE AERIAQDNTIYSPLWWGKTSTAFSSRVTPTEYTPFFFMTPWASSLELAK >gi|292821366|gb|ACYT02000018.1| GENE 43 43747 - 44697 1004 316 aa, chain + ## HITS:1 COG:SMa0467 KEGG:ns NR:ns ## COG: SMa0467 COG0601 # Protein_GI_number: 16262697 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Sinorhizobium meliloti # 1 311 23 334 338 218 45.0 2e-56 MLRYILRRLVGATVVLTLLSFLVFSLLYLVPGDPVKILVGTRRLTPEVRQAVTARYGLDE PLVVRYWHWLTRALTGDFGDSVRSATPVTDVLASRVSLTAWLTIGAFILAVAVGVPLGIA AARRRGSWVDRTIVGWSVVGVSAPGFAFGLVLLYVFGLMLGWFPVFGEGTGLVDTLWHLT LPAIALATGIGAMLVRITRAAVGAELSQDYVTFARSRGVPHRRITAMYVRGAALPIITSA GLILGTLFGSTVLVEEAFSLPGLGQLLADSITYKDVPVVQAIALLVAFVIIVVTLIVDVA AFAVDPRQTIGDGRGA >gi|292821366|gb|ACYT02000018.1| GENE 44 44697 - 45554 870 285 aa, chain + ## HITS:1 COG:SMa0469 KEGG:ns NR:ns ## COG: SMa0469 COG1173 # Protein_GI_number: 16262698 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Sinorhizobium meliloti # 35 280 1 246 249 167 45.0 2e-41 MTLLLSPRTLGRGIGSSARKIPGSVVLSVVVLVAVAICVIVPSVLVPGALDQNLALGVSP AGTPGHLLGTDKVGRDVLALTVAGARSAIVGPIVIAVGSMVAGLIVGMSAAWRGGLWDAC VSRSCEVLLSLPVTLLAIVVAGVIGGSYWVTVGVLIVLFAPSDIRMIRAATLAQKPQPYI EATRVLGLSGPRILAVHILPNITPIVWANLFVNIAFALVSLSGLSYLGLGVGAQDADWGR QLADGRALLAQNPAASVAAGLAIIVTATAINIAGDWFAERKERDL >gi|292821366|gb|ACYT02000018.1| GENE 45 45551 - 47107 222 518 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 281 501 7 230 311 90 30 3e-17 MSTATTRETRDGLVASHVSVTDRSGAVILDDVSVSARSGRTLVIVGESGAGKSMLARTLC ALTPSALVASGTVTLGGEIFDLAGDQGRLKKQRGGGIVWLPQDPFTSLAPTLLCGEQITA ARTGRRSERAQRSRALLADVGLDARVARSYPHELSGGMRQRVAIASALDSQPRVLIADEP TTALDVTTQRDILTLLTRLRDERAMTLVLVTHDLALARQFGDDVIVMKDGQIVEEGPVNE VLASPRYEYTKRLSDAEPRIDGPNPREGKSTPAGAETIVEVRDLTKVFRSRKDSRVALMD VSLEIAQGESIGIVGESGSGKTTLARVIVGLEHADSGTVHVNAQADRGPAVGIVFQNPYS ALNPARTIGQTLAEAASVAGRPASDVADLLAAVELPAEYAKRRPSRLSGGERQRVAIARA LATRPRVLIADEAVSALDVSVQASILDLLTRLQAEQGFALVFITHDLAVARAMCDRLVIM KGGVVVEEGSTEEILHNPSEEYTAELLSAVPGRETESA >gi|292821366|gb|ACYT02000018.1| GENE 46 47104 - 48204 453 366 aa, chain + ## HITS:1 COG:mlr7776 KEGG:ns NR:ns ## COG: mlr7776 COG0456 # Protein_GI_number: 13476450 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Mesorhizobium loti # 160 332 186 359 396 86 33.0 9e-17 MSTTLATTPIRPGDNAREQLRALGIPAAHAARWAAMGPAVSATLWTYSGHALLEAHRTTS AHRTIVDACLLDGGDAGAAAVESARTWEVLIQAVLDAAPHTPLVKAVTRDEGPLFEEVLR CRGFLAAGSVGSPLSIDDDTDHGHASVRGWVRWNVRPQVIPAYVRQKTDFTCGPASALMA LAHASGCAPDEVSHGLRDEMELWRESTYSLGVGPYGLAAALARRGQSVEVIVSHEGPLVG LTRAHAASPAARRAIHRQHVDEARALGVRDRIGTWDLSDLRAAVQQGNGVIVLVDLEDLN GEQTPHWIYVWGIVGGYALIHDPWNDEQFGETWVETWLEAITLEQLWESAQWEEEECARA FIIVHR >gi|292821366|gb|ACYT02000018.1| GENE 47 48294 - 49658 1966 454 aa, chain - ## HITS:1 COG:NMB2064 KEGG:ns NR:ns ## COG: NMB2064 COG2056 # Protein_GI_number: 15677886 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Neisseria meningitidis MC58 # 18 454 15 462 462 421 56.0 1e-117 MLLFNAVVLSVIVMLVLSIARVHVVISLFVASLVGGLVAGMGMSGTMVAFQDGLAGGAKI ALSYALLGAFAMSVAHSGLPRLLANWIINKLRNADDSNSARVARSAKWGILGGVLVMGVM SQNLIPIHIAFIPLLVPPLIGVMNELKMDRRMVACAITFGIVTTYMFVPIGFGRIFLHDI LYKNIEDAGLPVEGVVNPMAAMAIPALSMAVGCFIALFVSYRKPREYEQRETEFSTGDDK PVNMVKVWAAVVALIACFVIQAVLTKMDSEADPLLVGALVGLCLMLAMRVVPWQQADDVF SGGMKMMSLIGLIMITAQGYASVLKASGQIEPLVQQTSAMFNGSKALAAMIMLVVGLIIT MGIGSSFSTLPIISAIYVPLCVALGFSPIATVSIIGTAGALGDAGSPASDSTLGPTAGLN IDGQHDHMRDTVIPEFIHYNIPLLVGGWIAAMVL >gi|292821366|gb|ACYT02000018.1| GENE 48 49729 - 50535 829 268 aa, chain - ## HITS:1 COG:SPy0112 KEGG:ns NR:ns ## COG: SPy0112 COG0345 # Protein_GI_number: 15674334 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Streptococcus pyogenes M1 GAS # 1 261 1 250 256 151 38.0 1e-36 MRIGFIGTGAMAQAIARGAVASGVDPATLVFSNRTATKACDLADELGGNAASSNASLARQ VDIVILAVKPKDQRAVIKEISPIVVGRPDICVVSLAAGRTLDQITTDFGAGIPLVRVMPN VAATVGQSMTALTATRTTDAQVDAVRSLMDSVGRTILIDEDYFPVFQALASCSPAWYFQI VDSFARAGLKYGLSKDSAVEIAAQAMAGAATLLLAERENGTIPAQLIDRVTSPGGTTIAG LLAAEEGGLSTALVSAVDASIHADSHLG >gi|292821366|gb|ACYT02000018.1| GENE 49 50686 - 52656 2814 656 aa, chain - ## HITS:1 COG:MT2585 KEGG:ns NR:ns ## COG: MT2585 COG0433 # Protein_GI_number: 15842038 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Mycobacterium tuberculosis CDC1551 # 105 656 14 530 533 429 49.0 1e-120 MSENIEDLKAQLAAAEAAAKAAEAEAARAKAEALRLQLEAKGGSSAEAPAAAAEAEPQQA EAARATADALRTQMEAVEAPAAEAPAPEAAPASSPTPSGELSAFATQIQDAYSWDVPAVT IGTLIDNGARVPGVSAKMPLPMFNRHLLVAGATGTGKTRTLQLLAEGLSANGSSVLLCDV KGDLTGLAEAGASSEKLLSRTAANGQEWASSSFPIELLSLGGADSQFPGVPVRAQVSDFG PILLARALSLNTTQEQALQLIFAWADSHGLELIDLPDLRAVISFLTSDEGKDELATIGGV SKATAGVILRALTALESQGGGQFFGAPGFDTADLMRMDSTGRGIISLLGVGDISTRPALV SAVIMFLLANLFSTLPEVGDVERPKLVFFFDEAHLLFADATKEFERQVVQTVRLIRSKGV GVVFVTQTPKDIPSDVLAQLGSRIQHSLRASTPDDFKKLKATVQTFPKTSLELDEVLTTL GTGEAVVTVLDPKGNPTPVTPVGIWAPASVMGPASADTVARINQSSVIMGRYRDAVNPDS AEEKLERRAAEAQAAREEALAQEEAAREAERLQKEAAKEAERAAKEAEKAAAKEEAARQK EMEKLRRQVEKQQEKEEAARQRAAERRTRQVENVLGSVLRTAGREITRSIFGTRKR >gi|292821366|gb|ACYT02000018.1| GENE 50 52863 - 53594 412 243 aa, chain + ## HITS:1 COG:BH1333 KEGG:ns NR:ns ## COG: BH1333 COG1555 # Protein_GI_number: 15613896 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Bacillus halodurans # 43 239 17 205 210 98 38.0 9e-21 MNVSRWLARRRMAALTKAVYDSALTEDDEPSEPSVARLLPGGASVAALIVVIVLIAAVGV WRHAAAREHAQAPAQSSSEREESEAAAVATGPSPSAPASVGERTDDVVVYVSGAVASPGV LTLPASSRVIDAITAAGGATPEADLESINLARILVDGEQIRVAVVGDSPPASSEAGTAAG ACVRLATATEAELQTLPGIGPALAQRIISYRATHPRLSTVEELDDVPGIGPSLIEKIRPG VCG >gi|292821366|gb|ACYT02000018.1| GENE 51 53618 - 55141 636 507 aa, chain + ## HITS:1 COG:Cgl2296 KEGG:ns NR:ns ## COG: Cgl2296 COG0658 # Protein_GI_number: 19553546 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Corynebacterium glutamicum # 175 489 135 449 554 100 30.0 5e-21 MIDLRLAPAATATWAATWWATGHPAQWAWIGACALVALGCATSYARSQRGRKTPRHALTP SRSARLGLALLLICVACALAVGSAAGRQYDADPALRDSGPVHARVTLQSDPAPASSGFSA TRSARARIEAVSVGEEWILSNATALVRAPGWQDAARGDVYEVWGSLDATFAAEAPSVGTI RVRRAQLIERPSGLSAWMRSTHRAFAHACAPLPRDARSLVPGMAIGDDRAMPADLSDAMK KTSLTHLTAVSGSHIVIVLATVTLVVPARKALRLGATILVLTTILTLVGPDPSVVRSVCV AAVASLGLILGREGQSIAALCAVVIATLLIDPWAARSYGFALSALAALAVVGPSAALVRR CRRRIRGDTRAGKTLRRLVEMVCVPAFAELATAPIIVSLSGNVPVWGIAANVLAEPAVPV ATVAGLLGALISPLSIRAASACAVVASWATAWIAGAARVCASLPGNGVRVPGGSSTILGV YACCGGGWVAWRAWKRWGAPIVDEQGT >gi|292821366|gb|ACYT02000018.1| GENE 52 55289 - 56266 880 325 aa, chain + ## HITS:1 COG:Cgl2295 KEGG:ns NR:ns ## COG: Cgl2295 COG1466 # Protein_GI_number: 19553545 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Corynebacterium glutamicum # 12 325 10 331 331 130 30.0 3e-30 MAARGSRPAPPAQITLAPIVLIKGPEGLLVDRALDQLRALAHEADPNLERTDINAATYQA GQLDVIASPSLFGESRMVIIRDLETMSDALANDLIAYAGAPAPDVWMFLAHPGGNARGKK VIDTITKATWPVIPAEPLKNDRDKLALIAADVRAARRQMDTEAQQALVDALGNDPRAMAG ALAQLLSDVSGRITLEDVRRYQAGRVEATGYDVADAAVAGNSAKALTLARHAFATGIAPQ LLVTALAMKFRAMAKVSIGGSASALKMAPWQVDRARRELRGWSDASLAGAFGAIATADAE TKGASRDPQRAIEKALITICRLRGR >gi|292821366|gb|ACYT02000018.1| GENE 53 56321 - 58069 216 582 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 338 562 132 354 398 87 29 2e-16 MITIRTLVGRLREFKKPAILTPLFIIGEVILECLIPLTMVSLVDALDGVSLSPVMRLGLI LTGLAFASLACGILSARYAATASVGLAKNLRQDLFFKVQDFSFADIDRFSTSSLVTRMTT DVTNVQNAFGMLIRIAVRVPLMIVFSIVMAWRINVQMALIFLGMVPVLAIILAAIVLIAF PIFRRIFKKYDALNNSVQENVAAIRVVKSFVTEEHETTKFRAASQDVRKDFTNAEKLIAL NSPVMMFFIFAAIIAVDYVGASIIVNSGGTELTKGGLTALITYGIQILSQMLMLAFIFVM TTMAAESANRIAEVLNHDPSLSSPANGATEVVDGSVVFEGVSFKYSESAEENALSDIDLR IESGSTLGIVGGTGSSKTSLIQLICRLYDVSEGSVKVGGRDVRDYDLSAVRDAVSVVLQK NVLFSGTIKDNMRWGNPDATDEQIEHACKLAQADEFIQQLPGGYDYVISRGGTNVSGGQK QRLCIARALLKNPMILILDDSTSAVDTKTDSLIRHAFESEIPGTTTIIIAQRLSSVSHAD QIIVLDDGRIKERGTHEELMAAGGEYREIYDSQNAASESEVA >gi|292821366|gb|ACYT02000018.1| GENE 54 58071 - 60005 3070 644 aa, chain + ## HITS:1 COG:CAC3415 KEGG:ns NR:ns ## COG: CAC3415 COG1132 # Protein_GI_number: 15896656 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 25 643 18 626 627 722 58.0 0 MARMHGRPVDSDGEKLEGIERPFGRLMAYVFRHYPVRISLTVVCIITAAVASAVGSIFMQ QIVDNVVTPGLESGFDAVRATLVRLVVTMGIIFGAGVIASFIYTRAMAIVTQGTLKHMRD DMFDSMERLPLRFFDTHPHGAIMSTFTNDTDAIRQLIGQSIPTLIQSGLTIIVLIGTMLY YSVWLFLVVLIVGALMAFLTGKLGGLSGRFMKAQQAALADEEGFIEEMMDGQKVVQVFNH EQDAKDEFVEYNQKLFDSSQKANIYGNVLMPALGNIGNIMYVVIAIVGGVMILEQTPNIH LFGVDVITVGVVVSFLGMVRNFSQTIGQMSMQVPMIAMGMAGAGRVFALIDQEPEEDEGY VTLVRAHELPDGTLEPTEERTGIWAWRHPHKADGTVTYTRLRGELVMEDVDFSYDGEKQI LHDISLWAKPGQKIAFVGATGAGKTTITNLINRFYDIADGKIRYDGININKIHKPDLRRS LGVVLQDVKLFTGTVMENIRYGRLDATDEECIAAAKLANADSFIRRLPEGYDTMLTGNGS NLSQGQAQLLSIARAAVADPPAMILDEATSSIDTRTEALVQQGMDNLMEGRTVFVIAHRL STVRNSDAIMVLDHGRIIERGSHDDLIAQKGVYYQLYTGAFELE >gi|292821366|gb|ACYT02000018.1| GENE 55 60198 - 60542 311 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227874747|ref|ZP_03992900.1| ribosomal protein S20 [Mobiluncus mulieris ATCC 35243] # 27 112 1 86 87 124 76 2e-27 MSPRLSPGLDTALTDPVRHTSRRNPTVANIKSQKKRILTNEKRRVRNQSVKSELKTLVRR TREAVEAGDKEKALAALRVASRKLDVAVSKGVIHKNQAANRKSKLARRVASLGD >gi|292821366|gb|ACYT02000018.1| GENE 56 60677 - 61417 788 246 aa, chain - ## HITS:1 COG:no KEGG:Xcel_2206 NR:ns ## KEGG: Xcel_2206 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 122 239 55 172 175 140 58.0 3e-32 MHCHAPSRSLWITRDRRRALWIKRAPQRLPYAGPMNSIVRGIINFLIGVISGATEEAQKN TMTTKTGQRQSTKKSTPKPRSSSSSSAHSGSQHRYEDPATSNRPQTSIREASIADALAHA SYTPVMDGDADPGEVVWTWVPYQEDSSVGKDRPAVVIGAQGEGVYLLQLTSKDHTRDAPQ EAAAGRYWLDIGAGDWDSKGRPSEVRLDRALWVKATDVRREGSILPKATWQLIVDALKEH YRTHGD >gi|292821366|gb|ACYT02000018.1| GENE 57 61481 - 62497 836 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189686|ref|ZP_06608403.1| ## NR: gi|293189686|ref|ZP_06608403.1| hypothetical protein HMPREF0970_00724 [Actinomyces odontolyticus F0309] # 1 338 1 338 338 642 100.0 0 MLTATMHGPIVSLDAVAGGGTPEGSNTSATRARSSIHESVRCGAAGNVDKALDRGLEAYR EEGAPVELRLEAAKLCIDWYAALGSYGQCRKLAGEAARLGERYLERCHPLILMMRNSEAY WLAILGQHDMAIRKFSALLADMKHCPGVDPDISIAIRNNSAMPWKYTGKWKKAARVYREL LSELEEQREESDMTLLTVRDNLAEVLSADRCYDEAIALYERNMDALLTVADHGDWRVLRL RNEIARNTWMGGDRDAGEDLWTVLAEDCRRYLGDRDPMTARIRTILLTLATLRGDEGRAM SIARKLRDDHPDDWEECDFSEAAALLAESECGESGGRE >gi|292821366|gb|ACYT02000018.1| GENE 58 62522 - 64471 2550 649 aa, chain + ## HITS:1 COG:MT2476 KEGG:ns NR:ns ## COG: MT2476 COG0481 # Protein_GI_number: 15841921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Mycobacterium tuberculosis CDC1551 # 48 648 47 650 653 925 75.0 0 MATVRDFPRLNWHKRLRQWDDKEVNDFTEVHVPIPTPEQQAQIRPAHTPQGQIRNFCIIA HIDHGKSTLADRMLQLTGVVEAREMRDQYLDRMDIERERGITIKSQAVRMPWAHEGIPYA LNMIDTPGHVDFTYEVSRSLAACEGAVLLIDAAQGIEAQTLANLYLALENDLAIIPVLNK IDLPGAQPEKYAHEVAQLIGCDESEVLKVSGKTGEGVEDLLDRIVEVIPAPEGAPDAPTR AMIFDSVYDTYRGVVTYVRVVDGVLSTRQRVRMMSTGATHELLELGVISPEPKPEEGIGA GEVGYLITGVKDVRQSRVGDTVTSQVRGATEPLEGYRDPNPMVFSGIYPVDGSDFPDLRD ALERLQLNDAALTFEPESSAALGFGFRCGFLGLLHLEIIRERLEREFNLDLIATAPNVVY RVVTEDGTEVRVDNPSEFPEGKISEVREPVVNATILTPTEFTGTIMELCQERRGSMQGMD YLSEDRVELHYQLPLAEIVFDFFDQLKSRTRGYASLDYQESGEQSADLVKVDILLNGDRV DAFSAIVHRDGAYNYGQRMTKRLKELIPRQQFEIPVQAAVGARVIARETIKALRKDMLAK CYGGDISRKRKLLEKQKEGKKRMKSIGRVDVPQEAFIAALTSDVPTGKK >gi|292821366|gb|ACYT02000018.1| GENE 59 64567 - 65310 701 247 aa, chain + ## HITS:1 COG:STM3109 KEGG:ns NR:ns ## COG: STM3109 COG0220 # Protein_GI_number: 16766410 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Salmonella typhimurium LT2 # 1 240 17 234 239 151 39.0 9e-37 MSRTKSFTRRTRELPANLVRTWEAHAHRYVVEPRRGVGYTTVAEDFTLDLAEFFGRSAPV TLEIGSGTGEQIVAAADAHPERNFLALEVWVPGIAKLVSKAVEAGVDNIRVIEADAAQAL PIMLEDACLDEVWTFFPDPWRKARHRKRRLVSDSFAREVARLLRDGGMWRLATDWDDYAW QMRDVIEACEFFENPHAGERPDPEDPQPQRGGFAPRFEGRVVTHFETRGIDAGRHAHDIV GIRRPRG >gi|292821366|gb|ACYT02000018.1| GENE 60 65479 - 66669 1023 396 aa, chain + ## HITS:1 COG:MT2457 KEGG:ns NR:ns ## COG: MT2457 COG0635 # Protein_GI_number: 15841901 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Mycobacterium tuberculosis CDC1551 # 2 395 33 390 390 268 43.0 1e-71 MRCGYCDFNTYTVGFGPGAQVGDYAPSVLAEATLAARVMAESGLPVREAETVFFGGGTPT MLDTAELAEILTGLRERIGIAPGAEVTLEANPDTVTREGLVQLADAGFTRVSFGMQSAVP AILKTLDRTHTPERVPLVVQWAKEAGLSTSVDLIYGTPGESFADWETSLRAALSYDTDHI SAYALVVEGGTKMGAQVARGELPTPDPDDEAAKYELADVLLSEAGYAWYEISNFARTTDA DLTSGRPSTFYAHASAHNLAYWRDWDWWGLGPGAHSHVGCMRWWNVKNPAAYAARLRDGR SPAYAGEILDEDTRELERVMLGVRTSEGIELAGLPGTGQADEAGAALGAGAVSGGRVAAL IADGLIDGAAALGGRVILTLRGRLLADYVTRELMGY >gi|292821366|gb|ACYT02000018.1| GENE 61 66755 - 67000 183 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAMTAYRRVTIPHFSLYPTLHKPSQGDDKQTARLHMTYLGKHISTMMSTVLPRNPSLSH SHYLITYEYLKKVSMLVLVFR >gi|292821366|gb|ACYT02000018.1| GENE 62 66969 - 67658 550 229 aa, chain + ## HITS:1 COG:no KEGG:Sked_24060 NR:ns ## KEGG: Sked_24060 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 1 221 1 206 213 117 36.0 3e-25 MTLRYAVIADIVGSRTLTNRADAQRIFEAVLERASEGLALLQAPYPTVGDEFQAVAYTLE DALLLTLRAQLLLPPQLQLRFGIGAGRIEEFASGVHRQAPARGRGAESAALQDGSAWWAA RAAINRAHDVQDASNPFIRTWFMAHASVESEFSSHCQTCINAMLSLRDHSILKLSARHRR ITASLLLGKTQVEIARVEKLSQQAISDFARGTGAGLIQSSLIIAEAARA >gi|292821366|gb|ACYT02000018.1| GENE 63 67651 - 68469 808 272 aa, chain + ## HITS:1 COG:no KEGG:Sked_24070 NR:ns ## KEGG: Sked_24070 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 180 258 208 287 301 83 53.0 9e-15 MHEVLLLGIAASELTVLLTSDPRGWSRRLSLFLTLLLAVICYSWFILGVSAVANAIGATL ALVWFAWDLVDPSARGVLARWALASVGFVALLSLDPLNFPLLSLRSGRPIDLIIAVLFLV TGPVNHLITAILQCARGRASTPVPGWINAPVLPAMPVVDAEGGEDDAEESAEPEVISGVL PVLGAQAEGEEVTALRGGRWIGPLERLLIIVLAGAGAEVAIAAVVAAKGVIRFPEISQDS TGEKAEEFLIGSVSSWILAALVSMLIRVVSLH >gi|292821366|gb|ACYT02000018.1| GENE 64 68495 - 69397 750 300 aa, chain + ## HITS:1 COG:no KEGG:Sked_13390 NR:ns ## KEGG: Sked_13390 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 3 296 2 284 286 307 58.0 3e-82 MNSSDPYGRNIFAHDPHRDGPGARRPRSQAVHVEIGMVLEDVASGWVGAVTRVEKSGGVH LVELEDRRGVRRSFPLGPGFWLEGRPIEALPPRPAPAQASPGTQVSASGRRITNSGSFAP ASSGPKVAKRSRIWVEGRHDAELVQHVWGEDLAEAGIAVQLLEGVDNLEAILEVFGPTDT ARAGVLVDHMVSGSKESRIAEAVSARWPGAVLVLGHPFVDIWQAVKPARVGLERWPDIPR GTDIKHGTLEALGWPHADQRDIAVGWKRILSTVRTYRDLEPALLGRVEELIDFVTVPWAQ >gi|292821366|gb|ACYT02000018.1| GENE 65 69526 - 70569 1089 347 aa, chain + ## HITS:1 COG:ML0624 KEGG:ns NR:ns ## COG: ML0624 COG1420 # Protein_GI_number: 15827254 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Mycobacterium leprae # 5 344 3 343 343 249 45.0 5e-66 MTRNSAQNRRLDVLRAIVTQYVATREPVGSKAIAAGGLGVSSATIRNDMAVLEEAGLIYQ PHTSAGRVPTDRGYRVFVDRLAELKPMSGPERHALETFLAESIDIDDVVERSVRLLAQVT HQVALVQYPGARVRVLKHLEVIALAPGRVLVVVITADGEVGERSLTLHAPLDDGQLREVR EHLRHHCDGATSATAQACVDEATASARPELVGTVAAIGSALTDVLSGQSESKIVVAGAAN LARGALDFHDIAPVLDALEEQVVLMRLFAEADPGADVHVSIGAENPHDGLAEAAVVTGTY RAGAGDSVGSAHLGIVGPMRMDYARTMSSVRAVAAYLSRYLASQHGD >gi|292821366|gb|ACYT02000018.1| GENE 66 70621 - 71739 1293 372 aa, chain + ## HITS:1 COG:ML0625 KEGG:ns NR:ns ## COG: ML0625 COG0484 # Protein_GI_number: 15827255 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Mycobacterium leprae # 2 370 3 375 378 320 46.0 2e-87 MRDYYEVLGVTRDASQDEIKKAYRKLARKLHPDYAGADSEEAFKELSVAYETLSDPEKRQ MYDIGGPDALRGGGAGAGAGFGGFSDIFEAMFSGGFGASAAGPASRVRRGKDKQVTVDIT LEDAAFGAAKEVSFDTHVLCDACEGSMCQPGTSPTQCTTCHGSGFVTQIQNSLFGRMQTQ APCPSCQGYGNTIATPCAECSGSGRVRTRRTLNINIPAGASEGTQIRVSGEAEVGPGGGP NGDLYLLIREKKHPVFDRRGDDLHTWITIPMTTAALGTEFELETLDGKKTVTINPGTQPN DDIVLEGLGVGHLQRSGRGSMHVHVDVQIPKKLDDKSRELLKELAKVRGEVRVEPHRQQA SFFDKLRDTFMG >gi|292821366|gb|ACYT02000018.1| GENE 67 71746 - 72534 717 262 aa, chain + ## HITS:1 COG:Cgl2237 KEGG:ns NR:ns ## COG: Cgl2237 COG1385 # Protein_GI_number: 19553487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 262 1 241 241 137 37.0 2e-32 MTLPVFLAEDLTPALASLSVGDSATLGGAEGRHAASVRRIGAGEWVDVVDGAGARATCEV SGSDKASLSLVVRELVREDAPSPEVILVQALAKGGRDEAAVEICTEIGIDRVIPWASQRA IVQWKGPKAEKGRAKWEGVARAAAKQSRRAFVPVVEDVKDSRELASWVASLIGEAGVAFV CHEEAMDSLGAALARVQESRADGTLPSRIALIVGPEGGIGADETAQLVDAGARAIGLGDN VLRSSTAGAVALTLIRAAAGKY >gi|292821366|gb|ACYT02000018.1| GENE 68 72541 - 73440 814 299 aa, chain - ## HITS:1 COG:ECs4802 KEGG:ns NR:ns ## COG: ECs4802 COG2017 # Protein_GI_number: 15834056 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli O157:H7 # 7 296 9 297 300 272 45.0 5e-73 MVTRSASGREVTLSAGDYEARIVTVGAGLAGLRYRGHELVISHAVNECPPGYLGKVLMPW PNRVAGGSYSWKGSSYDLPVDEPAYGTALHGFVAFQEWDIAEADSSSVLLRTLIAARYSY PWTLLAHARYSLDADAGLTVELSATNIGEGTAPYGVGFHPYLAVDGLPADELELENPASI IYEADASMIPVAAHDVASFGLDFRSPAIISASRLDHAFAGLPEGTWAVTLRDPSSSVGVS LSSDARWLQVYSADYIDRVGVAVEPMSCPPNAFNSGTDVIALNAGETHTLSARISGFES >gi|292821366|gb|ACYT02000018.1| GENE 69 73492 - 74898 1917 468 aa, chain + ## HITS:1 COG:lin2432 KEGG:ns NR:ns ## COG: lin2432 COG3579 # Protein_GI_number: 16801494 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Listeria innocua # 29 468 19 440 441 348 41.0 1e-95 MSRLRHYEKRILIENESRLKGTPRPMAHEITDEFVASLHASSDSARAVARNAVSHAGVEP VAFDRAKVVATPTVMSHKVDDWKVTSQKKSGRCWLFSSLNLLRSTARTRMGLKDFEFSQN YVLFWDKFERANFFLTDVIATAKTEELDGRLLQFLLGDVLSDGGQWDMAVSLYLKHGLVP KVAMPETESSGHTAPMNDRLKVVLRRTALELRSLVEAGASEEEILEVKEAALADVWRILV ICLGEPPASFEWEWRDDKGEFHRDGVLTPHEFYSRYVDVDLTQYVCLVDDPRAEHPKGHT LTVDHMGNVVGGRPILYVNTPVEQIREITASILASGRAVWFGADCDQQSDRASGLFVEGL YDFDNLFGVDFSTSKEQRVNTGESAMNHAMLFTGVDIDEEGNARRFRVENSWGEEPGEKG FFTMDAAWFDANVFEVAVHVDDLPEELRAVITEEPLHLPAWDPMGALA >gi|292821366|gb|ACYT02000018.1| GENE 70 75377 - 75670 183 97 aa, chain + ## HITS:1 COG:no KEGG:Sked_12620 NR:ns ## KEGG: Sked_12620 # Name: not_defined # Def: adenosine deaminase # Organism: S.keddieii # Pathway: Purine metabolism [PATH:ske00230]; Metabolic pathways [PATH:ske01100] # 3 65 274 336 342 69 49.0 4e-11 MFIGVGLDSDDPAYFGGYIADYYFALAERFGLDCSALARIARNSIEISWAPDQDKERLLA GLEAFEAGEGLVLPLTRGPRLAPCTGRVRRGEDFVIQ >gi|292821366|gb|ACYT02000018.1| GENE 71 75710 - 76393 617 227 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_18410 NR:ns ## KEGG: RMDY18_18410 # Name: not_defined # Def: inorganic pyrophosphatase/exopolyphosphatase # Organism: R.mucilaginosa # Pathway: not_defined # 17 212 49 247 247 75 28.0 1e-12 MVVAHNPENGETMTDYIAIASFPTTAQSYEAFSKLTAQADRLGIVSGAIVEVDDSGHVSI SEASDSASSFGFGTGSVIGLLIGALAGPIGMLLGWGVGALAGSTADLARADAHEFALSEV ASRMVPGSNVVVLQTTEDNVELLNGEVARLGGAVIRRSLQETISEIEAEAAAIEAADEAA RKALREQRREEVETAWKDRVADLKEKHETFVAGVKEKVSGFSHGDAK >gi|292821366|gb|ACYT02000018.1| GENE 72 76534 - 77409 497 291 aa, chain + ## HITS:1 COG:no KEGG:CMS_1465 NR:ns ## KEGG: CMS_1465 # Name: not_defined # Def: putative aminopeptidase # Organism: C.michiganensis_sepedonicus # Pathway: not_defined # 15 132 8 126 256 90 47.0 5e-17 MACHYVVMNSHRPTLLISNVLPARPGDEAYNNICMRLWDRLLEAALPNWNVIREYAQEDG AEGAALRAQHADAIIIMGGEDVHPSLYGATQGYEAEGRHWYRADRGQIALVDYAVRTGTP LLGICRGMQIINGRKPVLKATETHDRAYRERDQHLQWRQAALGFNGYGGATKNDGEGEYE RVHMDNDSLYKGYARSTGAHAGRTPGQAHKTPGVKPPEHMRKPGTDSGELFAVWEGRKRS LPPDWEKSSLRATLEATSAPPPPPPATGSSVPPPSPPPAPPAPPVPPPPAQ >gi|292821366|gb|ACYT02000018.1| GENE 73 77736 - 78009 149 91 aa, chain + ## HITS:1 COG:no KEGG:Elen_1126 NR:ns ## KEGG: Elen_1126 # Name: not_defined # Def: transposase and inactivated derivative # Organism: E.lenta # Pathway: not_defined # 1 90 55 145 167 110 71.0 1e-23 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGGAQALKPK PKGRPKGSVGAVPPTREEELQERVRKLEAQV Prediction of potential genes in microbial genomes Time: Tue May 17 06:15:27 2011 Seq name: gi|292821292|gb|ACYT02000019.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.26, whole genome shotgun sequence Length of sequence - 68181 bp Number of predicted genes - 70, with homology - 67 Number of transcription units - 30, operones - 18 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 36 - 368 441 ## COG2801 Transposase and inactivated derivatives 2 2 Tu 1 . + CDS 740 - 1756 1565 ## COG1816 Adenosine deaminase + Term 1803 - 1844 -0.3 3 3 Op 1 . + CDS 1932 - 2714 952 ## COG2071 Predicted glutamine amidotransferases 4 3 Op 2 . + CDS 2711 - 3382 532 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 5 3 Op 3 . + CDS 3379 - 4017 677 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 4135 - 4172 3.0 6 4 Op 1 11/0.000 - CDS 4050 - 4928 1253 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 5008 - 5056 12.1 7 4 Op 2 . - CDS 5066 - 5317 497 ## COG1882 Pyruvate-formate lyase 8 5 Tu 1 . - CDS 5440 - 7545 3505 ## COG1882 Pyruvate-formate lyase 9 6 Op 1 . + CDS 7466 - 7771 149 ## 10 6 Op 2 13/0.000 + CDS 7820 - 9127 1699 ## COG0460 Homoserine dehydrogenase 11 6 Op 3 3/0.000 + CDS 9129 - 10079 1000 ## COG0083 Homoserine kinase + Term 10105 - 10168 22.1 12 6 Op 4 . + CDS 10180 - 12030 2602 ## COG1158 Transcription termination factor + Term 12042 - 12089 17.8 13 7 Tu 1 . + CDS 12345 - 13310 680 ## gi|293189717|ref|ZP_06608433.1| conserved hypothetical protein 14 8 Op 1 . + CDS 13444 - 13749 65 ## gi|293189718|ref|ZP_06608434.1| transporter, periplasmic ligand binding protein, ABC polar amino acid family 15 8 Op 2 . + CDS 13719 - 15062 1000 ## Achl_2089 hypothetical protein + Term 15063 - 15103 1.2 16 9 Op 1 . + CDS 15138 - 15596 359 ## gi|293189720|ref|ZP_06608436.1| conserved hypothetical protein 17 9 Op 2 . + CDS 15593 - 16297 601 ## gi|293189721|ref|ZP_06608437.1| conserved hypothetical protein + Prom 16346 - 16405 2.7 18 10 Op 1 10/0.000 + CDS 16528 - 16749 312 ## PROTEIN SUPPORTED gi|229240501|ref|ZP_04364900.1| LSU ribosomal protein L31P + Term 16769 - 16818 18.0 19 10 Op 2 32/0.000 + CDS 16844 - 17938 1400 ## COG0216 Protein chain release factor A 20 10 Op 3 10/0.000 + CDS 17950 - 18846 268 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 21 10 Op 4 4/0.000 + CDS 18852 - 19517 702 ## COG0009 Putative translation factor (SUA5) 22 10 Op 5 . + CDS 19514 - 20620 1411 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 23 10 Op 6 . + CDS 20617 - 20910 443 ## gi|293189727|ref|ZP_06608443.1| conserved hypothetical protein 24 11 Op 1 . + CDS 21011 - 21883 1240 ## COG0356 F0F1-type ATP synthase, subunit a 25 11 Op 2 . + CDS 21925 - 22134 499 ## Elen_1040 H+transporting two-sector ATPase C subunit 26 11 Op 3 38/0.000 + CDS 22140 - 22700 695 ## COG0711 F0F1-type ATP synthase, subunit b 27 11 Op 4 41/0.000 + CDS 22697 - 23515 820 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 28 11 Op 5 42/0.000 + CDS 23563 - 25200 2458 ## COG0056 F0F1-type ATP synthase, alpha subunit 29 11 Op 6 42/0.000 + CDS 25204 - 26133 1062 ## COG0224 F0F1-type ATP synthase, gamma subunit 30 11 Op 7 42/0.000 + CDS 26159 - 27607 2018 ## COG0055 F0F1-type ATP synthase, beta subunit 31 11 Op 8 . + CDS 27607 - 27879 296 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 32 11 Op 9 . + CDS 27905 - 28309 342 ## Bcav_1309 hypothetical protein 33 11 Op 10 . + CDS 28332 - 29024 674 ## COG1637 Predicted nuclease of the RecB family 34 11 Op 11 . + CDS 29024 - 30130 549 ## PFREUD_20890 hypothetical protein 35 11 Op 12 . + CDS 30157 - 31347 1402 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 36 11 Op 13 . + CDS 31398 - 31640 149 ## HMPREF0573_11106 ATP/GTP-binding protein 37 12 Op 1 . + CDS 31793 - 33241 1543 ## BDP_1938 hypothetical protein 38 12 Op 2 . + CDS 33241 - 34239 1280 ## BAD_1422 hypothetical protein 39 12 Op 3 . + CDS 34338 - 35240 894 ## COG3118 Thioredoxin domain-containing protein 40 13 Tu 1 . - CDS 35609 - 35806 92 ## gi|293189744|ref|ZP_06608460.1| conserved hypothetical protein - Prom 35968 - 36027 2.3 + Prom 35610 - 35669 5.0 41 14 Op 1 . + CDS 35700 - 35957 124 ## gi|293189745|ref|ZP_06608461.1| putative lipoprotein 42 14 Op 2 . + CDS 35921 - 36133 239 ## gi|293189746|ref|ZP_06608462.1| cation transporter, cation diffusion facilitator family + Term 36191 - 36236 17.4 - Term 36179 - 36224 17.4 43 15 Op 1 4/0.000 - CDS 36243 - 38438 3508 ## COG0296 1,4-alpha-glucan branching enzyme - Prom 38483 - 38542 2.8 - Term 38447 - 38478 0.2 44 15 Op 2 . - CDS 38602 - 40644 2735 ## COG0366 Glycosidases - Term 40763 - 40812 10.5 45 16 Op 1 . - CDS 40829 - 41086 485 ## gi|154509248|ref|ZP_02044890.1| hypothetical protein ACTODO_01773 46 16 Op 2 . - CDS 41111 - 42211 1745 ## COG0180 Tryptophanyl-tRNA synthetase 47 16 Op 3 . - CDS 42259 - 44547 3118 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 44576 - 44635 3.2 48 17 Op 1 29/0.000 + CDS 44741 - 45544 1076 ## COG2086 Electron transfer flavoprotein, beta subunit 49 17 Op 2 2/0.000 + CDS 45546 - 46523 1298 ## COG2025 Electron transfer flavoprotein, alpha subunit 50 17 Op 3 7/0.000 + CDS 46520 - 47725 1125 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 51 17 Op 4 . + CDS 47726 - 48817 1293 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + TRNA 48899 - 48979 66.1 # Leu TAG 0 0 + Prom 48901 - 48960 80.3 52 18 Op 1 . + CDS 49033 - 49506 729 ## COG1225 Peroxiredoxin 53 18 Op 2 . + CDS 49568 - 49732 85 ## 54 19 Tu 1 . + CDS 49990 - 50571 224 ## gi|293189758|ref|ZP_06608474.1| conserved hypothetical protein + Prom 50596 - 50655 4.1 55 20 Op 1 . + CDS 50678 - 51481 324 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 56 20 Op 2 . + CDS 51466 - 53160 1870 ## Xcel_0944 hypothetical protein 57 21 Tu 1 . + CDS 53906 - 54364 -58 ## - TRNA 54330 - 54402 80.4 # Lys CTT 0 0 - TRNA 54437 - 54509 80.4 # Lys CTT 0 0 58 22 Tu 1 . + CDS 54655 - 55323 610 ## COG1321 Mn-dependent transcriptional regulator - Term 55360 - 55406 7.0 59 23 Tu 1 . - CDS 55447 - 55893 639 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 60 24 Op 1 . + CDS 56018 - 58948 4585 ## COG0495 Leucyl-tRNA synthetase 61 24 Op 2 . + CDS 58955 - 59992 1142 ## COG0266 Formamidopyrimidine-DNA glycosylase 62 25 Op 1 . - CDS 60051 - 60542 442 ## HMPREF0573_10185 hypothetical protein 63 25 Op 2 6/0.000 - CDS 60628 - 61272 825 ## COG1045 Serine acetyltransferase - Term 61300 - 61342 11.5 64 26 Op 1 2/0.000 - CDS 61365 - 62297 788 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 65 26 Op 2 . - CDS 62334 - 62990 520 ## COG1739 Uncharacterized conserved protein - Prom 63225 - 63284 2.6 66 27 Tu 1 . + CDS 63166 - 63336 232 ## PROTEIN SUPPORTED gi|227495349|ref|ZP_03925665.1| 50S ribosomal protein L32 + Term 63353 - 63391 9.0 67 28 Tu 1 . + CDS 63468 - 64739 1548 ## COG0475 Kef-type K+ transport systems, membrane components + TRNA 64775 - 64847 68.0 # Arg TCT 0 0 68 29 Tu 1 . - CDS 64836 - 65087 161 ## gi|293189772|ref|ZP_06608488.1| repressor protein CI 69 30 Op 1 9/0.000 + CDS 65899 - 66882 1285 ## COG0685 5,10-methylenetetrahydrofolate reductase 70 30 Op 2 . + CDS 66962 - 68180 1694 ## COG0620 Methionine synthase II (cobalamin-independent) Predicted protein(s) >gi|292821292|gb|ACYT02000019.1| GENE 1 36 - 368 441 110 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 106 112 215 216 108 51.0 3e-24 MDAKPAGAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCIDNGATEQVFGHLKDE FFRGQDWQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQALQEAA >gi|292821292|gb|ACYT02000019.1| GENE 2 740 - 1756 1565 338 aa, chain + ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 3 336 2 336 339 313 47.0 2e-85 MSTDVTRDFAFGLPKAELHLHLEGTLEPDLKLALARKNGVDIGQSTVEEVQATYRFNDLT SFLAVYYPAMDVLQDEDDFHDLAAAYFERARANGVVRAECFFDPQAHTSRGIAIETVIRG YHRAVVEAREAGLSADLILCFLRDMSAQSALETLQAALPYKDMFIGVGLDSDERDNPPTK FAEVFALAREAGLHVTMHCDIDQVGSIDNIRAALIELGAERLDHGTNIVEDPELVAYARD HGIGLTSCPLSNSFVTEEMKGKEIVELTAAGVKVSVNSDDPAYFGGYVGDNYLALAQRFG LGRADLERIARNSIEIAWISDDEKAELLERVDRFVSEN >gi|292821292|gb|ACYT02000019.1| GENE 3 1932 - 2714 952 260 aa, chain + ## HITS:1 COG:ML1573 KEGG:ns NR:ns ## COG: ML1573 COG2071 # Protein_GI_number: 15827825 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Mycobacterium leprae # 56 240 57 234 249 105 38.0 9e-23 MTNHTKPTLLISNVLPARPGDEAYNNICMRLWDRLLEAALPTWNVIREYAQEDGAEGAPL RAQHADAIIIMGGEDVHPSLYGASQGYEAEGRHWYRADRGQIALVDYAVHTGTPLLGICR GMQIINTALGGTLEQHIEGAHGTHTNNQILSDHRFIRHSVRVGEGTNLARALAPVLTDSE LIISSAHHQRVDRLAQGLQVSAYAPDGTIEAIESMDAPVIGVQWHPEDPAADISQLHALL GHLDARRAPRLERASTTLVA >gi|292821292|gb|ACYT02000019.1| GENE 4 2711 - 3382 532 223 aa, chain + ## HITS:1 COG:all1011 KEGG:ns NR:ns ## COG: all1011 COG0110 # Protein_GI_number: 17228506 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Nostoc sp. PCC 7120 # 20 200 10 191 192 184 48.0 8e-47 MTISPGTNFDDPRFRHDGSTPAQRLEAGDYYVADDELSALTKRAVRLLSLYEQAHPTDPD IAAYLLAQVLRQVGDGVDIRPPLRVDYGYNISIGDGSWVNYGLTVLDVAPVVIGADVLIG PNCSLYTAIHPSEPGPRRAKWESSAPITLEDNVWLGGSVVVCPGVTIGENSIIGAGAVVT RDIPANSIAVGNPARVIKNLDPTTPRAIEAAGIGLIAHTGDHA >gi|292821292|gb|ACYT02000019.1| GENE 5 3379 - 4017 677 212 aa, chain + ## HITS:1 COG:MT0444 KEGG:ns NR:ns ## COG: MT0444 COG0242 # Protein_GI_number: 15839816 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Mycobacterium tuberculosis CDC1551 # 1 210 1 190 197 134 38.0 1e-31 MSILPICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFV WRYGGAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA LESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVD RLAQPYAAQAQQVIAERGWGASGHTWTPGERA >gi|292821292|gb|ACYT02000019.1| GENE 6 4050 - 4928 1253 292 aa, chain - ## HITS:1 COG:STM0970 KEGG:ns NR:ns ## COG: STM0970 COG1180 # Protein_GI_number: 16764330 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Salmonella typhimurium LT2 # 46 291 28 272 274 200 38.0 3e-51 MSQPLALPTFREQDFQAPQSRTVGAGVEGLEEITDLERSERLRRMREGTLGSIHSWELVT AVDGPGTRMTVFLNGCPLRCLYCHNPDTFLMKDGAPVSDTELLSRIARYRRIFRTTQGGI TLSGGEVLMQPQFAKRILMGAKEMGVHTCIDTSGFLGANCDDEMLDAIDLVLLDVKSGNE ETYKKATGRSLAPTIEFGDRIAARGGATRIWIRFVLVPGLTDDPENVRQVGEIVSRWKDV IDRIEVLPFHQLGKDKWHSLGLEYQLEDTKAPTPEATEEVRNYFRSLGFLVH >gi|292821292|gb|ACYT02000019.1| GENE 7 5066 - 5317 497 83 aa, chain - ## HITS:1 COG:SA0218 KEGG:ns NR:ns ## COG: SA0218 COG1882 # Protein_GI_number: 15925929 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Staphylococcus aureus N315 # 27 82 693 748 749 93 76.0 1e-19 MATKTYEERLADMKAAREERGDKEGLYHANINVLEESTLKDAMEHPEKYPNLTVRVSGYA VNFVKLTREQQLDVLSRTFHHSA >gi|292821292|gb|ACYT02000019.1| GENE 8 5440 - 7545 3505 701 aa, chain - ## HITS:1 COG:FN0262 KEGG:ns NR:ns ## COG: FN0262 COG1882 # Protein_GI_number: 19703607 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Fusobacterium nucleatum # 7 687 2 682 743 817 59.0 0 MTTADQKAWEGFVKGNWCDEIDVRDFIQLNYTPYEGDASFLAGPTEKTLRVWNTLEEKYL SEERKVRILDIDTDTPADIDAFKPGYICEDDNVIVGLQTDAPLKRAMMPNGGWRMVETAI HEAGMEYNPEVKKIFTKYRKTHNDAVFDIYTPRIRAARSSHIITGLPDAYGRGRIIGDYR RVALYGVDHLIAEKEKDKDRYANEPFSEHWARYREEHSEQIKALKKLKNLAQSYGYDISG PATNAHEAVQWTYFGYLASVKSQDGAAMSIGRLSGFFDVYFERDLKNGTLDESGAQEIID ALVIKLRITRFLRTIAYDQIFSGDPYWATWSDAGFGDDGRTLVTKTSFRLLQTLVNLGPA PEPNITIFWDENLPRGYKEFCALISIDTSSIQYESDPQIRAHWGDDAAIACCVSPMKVGK QMQFFGARVNAAKALLYAINGGRDEMSGKQVMEGYEPVQGDGPLDFDDVWKRYEEMLDWV VGTYVEALNIIHYCHDRYAYESIEMALHDSEIIRTMGCGIAGLSIVADSLAAIKYAKVYP IRDETGLVVDYRTEGDFPTYGNDDDRADDIAATVVHTVMDKIRAIPMYRDAIPTQSVLTI TSNVVYGKATGSFPSGHQKGTPFAPGANPENGIDTHGMVASMLSVGKLDYNDALDGISLT NTITPQGLGRSKEEQIQNLVGILDAGFVPDDSCAYDGTKGY >gi|292821292|gb|ACYT02000019.1| GENE 9 7466 - 7771 149 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSRTSISSHQLPFTKPSQAFWSAVVILPLLGCPYPVVGTVCSERSSMCVGFQRLGPLSY GLGGLDNPYRPAVYVLCLRIWAESLCRSNCGTKVLKRGEGL >gi|292821292|gb|ACYT02000019.1| GENE 10 7820 - 9127 1699 435 aa, chain + ## HITS:1 COG:Cgl1157 KEGG:ns NR:ns ## COG: Cgl1157 COG0460 # Protein_GI_number: 19552407 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Corynebacterium glutamicum # 3 433 14 443 445 391 53.0 1e-108 MSAPRPVLGVGVLGAGTVGSQVIRILQSSREDFAARSGAEMEVRRVLVRNVDAPRDAPID RELLTTDPAEAIDNMDLVVELIGGIEPARTLVLRALNQGISVVTGNKALLAAHGPELYKA AASNGADLYYEAAVAGAVPVVYGLRESLAGDRITTVMGIVNGTTNFILDAMSTKGLSYED ALKQAQDLGFAEADPTADVEGFDAAAKCSILASLAFHTRVGIDDVAVEGISSITKEDMEE AARVGHTIKLLAIAERRIGEDGREGVAMRVHPAQVPSDHPLASVDGAFNAILVEGEAAGR LMFYGQGAGGAPTASAVLSDLVAAAHHRAFGGHAPRESVYAHLPILDPGSTHTRYQIRLK VEDRLGVLSDVAGIFARHGVSIQSVHQRNDEVPGACVIVVTSHRAREADLRAVARALSVS DAVREVTSTIRVEGE >gi|292821292|gb|ACYT02000019.1| GENE 11 9129 - 10079 1000 316 aa, chain + ## HITS:1 COG:Cgl1158 KEGG:ns NR:ns ## COG: Cgl1158 COG0083 # Protein_GI_number: 19552408 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Corynebacterium glutamicum # 8 300 11 299 309 169 42.0 5e-42 MRLRDDFVAVKVPATSANLGPGFDSMGLALDLWDEVSVHATTGATSVVVEGEGAGNVEQG EDNLVVRALRLALDRVGAPQVGVRMHCTNRIPHSRGLGSSASAIVAGVTLARALIGDADV LGRREILAIGSQMEGHPDNVAPAVFGGATVSWMNDETSEVGSVRLTPPEGISPVAFIPDF ELRTAAARAALPATVPHGDASFNVARGALLAAVLSGNAQAGGGADLHALLMEATRDRLHQ EQRRAAMEPSLALVDWLRGAGFAAVVSGAGPTVLSLESVGADIRRDAAAAGWRVVPMGVA PQGAQITRGSLSKVEF >gi|292821292|gb|ACYT02000019.1| GENE 12 10180 - 12030 2602 616 aa, chain + ## HITS:1 COG:Rv1297_2 KEGG:ns NR:ns ## COG: Rv1297_2 COG1158 # Protein_GI_number: 15608437 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium tuberculosis H37Rv # 240 614 58 434 440 497 68.0 1e-140 MFDFGLRDVPLLRIFLIKLFHVLEQSPRPLWAHSSKDHFVSNETSAETTASLSAMKLPEL KALAASRGLKGISQLRKSQLIELLSNGAGASTPQEKAPRKEAAASSEKKADKSEKPAAEK SVEQASASDAPAEAPRRSRRRRAVSQGAVEPAHVTLDLPLPAAERTEPTPEPDTTVVETV LNIELPDGDDTEARRPRRERGRRGRRDRENRENRGEGRENRENRGEGRENREARPARGGE DNLAPIAGILDIQENHAFVRTSGYLPGPNDVYVTLGNVRRWGLRAGDAVAGAVRLPREGE RQRQKYNALVRVDSVNGMTIEQAQARREFGKLTPVYPSEQLRMETSPKAYTPRVIDLVAP VGKGQRGLIVSPPKAGKTMVIQQMAKAIELNNPEVHLMVVLVDERPEEVTDMRSIVKGEV IASTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNLAAPASGRILSG GVDASALYPPKKFFGAARNISEGGSLTIIASALVETGSKMDEVIFEEFKGTGNMELRLSR QLAERRIFPAIDLNASGTRREELLFKPEELRIMWRLRRVLGTLDQQQGLELVLDKLKETQ SNAEFLMLIQKTTPSE >gi|292821292|gb|ACYT02000019.1| GENE 13 12345 - 13310 680 321 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189717|ref|ZP_06608433.1| ## NR: gi|293189717|ref|ZP_06608433.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 321 1 321 321 568 100.0 1e-160 MALCGIGVLWRGAGLRRSGRQKMAEIAEKWAALESQRAEVERVFSTLVGVGHYAIGLTAR HECARAERIKVGARIAEHRPPGFFASLSEASAGEGDEILARMERLADADAAIMAARDFFA FAPGWRDVWKTEVGPIIEDLDILDDVADTLESVNTDPRILMEIEAFRDCVGDDKDSVNEL GTRLEGGQIAPAQALEELDRITNEARARTAELIEETLATDASAQGRHRYARWKSVGIRLT AANAEYDAAYWSQDADTDIEYNPAATIRLTANSAGVDLEGLPAPATGVLTATGSSVYLLP MYLDQYLSDDVDEAGGGSVST >gi|292821292|gb|ACYT02000019.1| GENE 14 13444 - 13749 65 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189718|ref|ZP_06608434.1| ## NR: gi|293189718|ref|ZP_06608434.1| transporter, periplasmic ligand binding protein, ABC polar amino acid family [Actinomyces odontolyticus F0309] # 1 101 1 101 101 175 100.0 7e-43 MTARDVKRSALGMGRILLGVIMAIVGPMWLVSALVDYTRPTVPTNDLVAPSVEVHDETGS FDPIDGRPLTDALGDVKFTRPSTSSSCRRMTLWTTTLTRPR >gi|292821292|gb|ACYT02000019.1| GENE 15 13719 - 15062 1000 447 aa, chain + ## HITS:1 COG:no KEGG:Achl_2089 NR:ns ## KEGG: Achl_2089 # Name: not_defined # Def: hypothetical protein # Organism: A.chlorophenolicus # Pathway: not_defined # 2 324 83 396 497 96 30.0 2e-18 MDDNLDEATLKYARARHQEWISPNGYKWADGYLILSASPTHRKVGTYFGEDIAPLLSVQE EIQDAAKDDFRAGRWSQGMIAAATKAAACIPNEAGYSIKNRVVWPHWTGWLVSLTGIGIL LRGHSLRRTVRDSSERIAEAWKEMEGRRSEVDRAFHSIVDAGHYSKGLTARYGCAHQERK KVSERVAVVKSPGFFGSLSAGAASEREELLEDIELLSAADDAIFAARDFFALAPGWRDLW DNEVGQVFEDLSAADSISVKVRNRVKKHQVRNAVEAFNRWTNEQRDIIVGLGVSLEYADI TPVQALNELDRIADESRARLTKLIGQALVADTSSSGRQRYEHWERNSGGTVSASDVLYKG TYLSSGDLHEHNPASTIRLTANSAGVRLTGKAAEKSGRFQANNVSVWAYPTYLDRYVDYG PSSSSTSSADYGSSSDGFSGSGSSSSF >gi|292821292|gb|ACYT02000019.1| GENE 16 15138 - 15596 359 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189720|ref|ZP_06608436.1| ## NR: gi|293189720|ref|ZP_06608436.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 12 152 1 141 141 206 100.0 3e-52 MSHVPQHPRSVMRSVRGCARLLAGLTLIVVAPVWLGIAVSVDATHTVLWPTWYVWVATLA GVGLWVRGWMLRGLARENVGKAIQEWDALEKRHLEVERAFLPLLVAGRYDRGLAARLEAA RAECENLRARIAAAASIPFVASLSGATARKRR >gi|292821292|gb|ACYT02000019.1| GENE 17 15593 - 16297 601 234 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189721|ref|ZP_06608437.1| ## NR: gi|293189721|ref|ZP_06608437.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 234 1 234 234 443 100.0 1e-123 MSVEDVHGLMDAHVAMMVACDLFALTPTWRTVWENELGPVCEDLTVIETITETVQSRSMA PMVLSMAASLVLWLDEQRLAVNDLGTSLERAQIDSAEALTQLDRIADEARVHLVHLVEAA LGADTSMIGQRRYKRWRKGAGEKLRTNETRYLGAYRIAGVTYTYNPAQAIRLTANSAGID LKGSAAHSTARFKAFGAELYVPPAYLHRYLVWDGTSRYGSSRAHTLSAALRPRL >gi|292821292|gb|ACYT02000019.1| GENE 18 16528 - 16749 312 73 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229240501|ref|ZP_04364900.1| LSU ribosomal protein L31P [Cellulomonas flavigena DSM 20109] # 1 68 1 68 71 124 82 1e-27 MKQGIHPEYVDTVVTCTCGNSFHTRSTITSGEMRVDVCSACHPFYTGKQKILDTGGRVAK FEARYGKRVRPSK >gi|292821292|gb|ACYT02000019.1| GENE 19 16844 - 17938 1400 364 aa, chain + ## HITS:1 COG:ML1134 KEGG:ns NR:ns ## COG: ML1134 COG0216 # Protein_GI_number: 15827565 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Mycobacterium leprae # 13 358 11 358 361 374 62.0 1e-103 MAATDELGALGPLLQEYEQVEAQMADPQTLADPQLMRRVGRRYAELGRVKAAADRLASAS GDLEAARELAAEDRSFADEIPALEEEEAAAHEALVKILAPRDPEDAMDVILEIKAGEGGE ESALFASDLARMYARYAEAHGWSVTEMSATHTELGGFKDITLAIRAKGTPAPDEGVWAHL KYEGGVHRVQRVPVTESQGRIHTSAAGVFVMPEIEDDEEIVIDPNDLRIDVYRSSGPGGQ SVNTTDSAVRITHIPSGIVVSMQNEKSQLQNKEAALRVLASRLAAEARAKKEAEASAQRL SQVRTVDRSERIRTYNFPENRIADHRTGFKAHNLDAVLSGALDAVIASLQEADEAERLAA AAQS >gi|292821292|gb|ACYT02000019.1| GENE 20 17950 - 18846 268 298 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 13 285 26 289 294 107 32 1e-22 MGTWSITDARAWARERLTEAGIDSVDADLRELLEWACDASSQWDLPAELNEDQAEKLRSA VGERALRIPLQHITGRMFFRGLTLAARPGVFVVRPETEVLAGLAIDEAMAVVARHGEARV VDLCAGSGAIGLAVATETTCTEVWAVEKEAEPFALACQNRDAVGVPCLHLERGDATDPAT LAHLDGMVDVVVTNPPYVPADEMPTQPEASADPHVALYGGSPDGTEIPARVARRALTLLR PGGVLLMEHSPSQEEAMVAIAAQLGMTDIATLPDLAGRRRFLSARAPESTKPTASVTQ >gi|292821292|gb|ACYT02000019.1| GENE 21 18852 - 19517 702 221 aa, chain + ## HITS:1 COG:MT1340 KEGG:ns NR:ns ## COG: MT1340 COG0009 # Protein_GI_number: 15840751 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Mycobacterium tuberculosis CDC1551 # 3 218 2 217 217 173 47.0 3e-43 MSTETILSAVPSLSEADLARAQRELRDGHLLVVPTDTVYGIGADAANPEAVAAVLAAKGR GRQMPPPVLVASVDAIDLLCVDIPEAARALARAFWPGGLTLILRARPDLGWDLGETGGTI GVRMPNQAALLRLLHDFGPMAVTSANLTGQPPATSVEQAVGYFGTRVSAYLDGGPTQGST ASSIVDFAHETPRVLRFGTISLDDLSAAAGVPIAPVEGAAS >gi|292821292|gb|ACYT02000019.1| GENE 22 19514 - 20620 1411 368 aa, chain + ## HITS:1 COG:Cgl1177 KEGG:ns NR:ns ## COG: Cgl1177 COG0472 # Protein_GI_number: 19552427 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Corynebacterium glutamicum # 10 352 19 368 382 166 35.0 7e-41 MKVYLLLGAIAMALTILLTPAVRWACLQFNILPPLRGRDLQKKPIPRLGGVAMTIALIVT MLLASRIPYMAPLFTTTVPWAVMAGAGAMCILGIIDDIIELDWMAKLGGQVLIAGGMAFG GVQLASFPIFGLTLGSSRLWLFVSVFFIVGIMNAVNFIDGLDGLASGMIAIGAGSFFVYS YIITRLMGAASYATTASLIVIALLGVCAGFLWFNFHPSSIMMGGGAETMGLVLAAAGIIV TGKIDPSLLGRQQMIVSALPLILPLSVIFMPVLDLVVTSIRRMSRGKSPFVADRSHFHDR LLVAGHSHRGVVAILWMWTAIVCVPAVGLLVFEWWSVALVAVTAAAIGVAITTREFPKEE TTPEEVSA >gi|292821292|gb|ACYT02000019.1| GENE 23 20617 - 20910 443 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189727|ref|ZP_06608443.1| ## NR: gi|293189727|ref|ZP_06608443.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 97 1 97 97 135 100.0 6e-31 MTYVLALAMVVVIVAAQWFFTSRALRSPSHFIGWVTGGYAAKIALLAIGLYVPRALGMDV KVAAFATIIAIIVSSTVEMMVMMRKRTMNVDAPSDTQ >gi|292821292|gb|ACYT02000019.1| GENE 24 21011 - 21883 1240 290 aa, chain + ## HITS:1 COG:Cgl1179 KEGG:ns NR:ns ## COG: Cgl1179 COG0356 # Protein_GI_number: 19552429 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Corynebacterium glutamicum # 59 287 37 265 270 155 38.0 8e-38 MSDHAPARRTASKPRWYWVSLAILLIVIALTAYPAFTQHPHQPALEDFFPTVIFGEGTFF EFNRLTLARVIMGVLVSLILVAVARKPQLVPSRGQMAVEAIAGYIRDNVALDMLGPKTGR KFSGFIGFLFFGVLAMNIAGIIPGINIAASSVVAVPMVFALITYVTFIGAGISKQGVGGF FSSQLFPPGLPVPMYLLITPIEFLSNFIVRPVTLTLRLLCNMISGHLLLGMTYFGTAILL HELSVLSAASALTGAAMFVMTGFEVFVAFLQAYIFTILSTVYIKLSVEHH >gi|292821292|gb|ACYT02000019.1| GENE 25 21925 - 22134 499 69 aa, chain + ## HITS:1 COG:no KEGG:Elen_1040 NR:ns ## KEGG: Elen_1040 # Name: not_defined # Def: H+transporting two-sector ATPase C subunit # Organism: E.lenta # Pathway: Oxidative phosphorylation [PATH:ele00190]; Metabolic pathways [PATH:ele01100] # 1 68 5 72 72 65 63.0 4e-10 MGTAAFAYIGYGLATLGPGLGIGLMVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLI GFVLPLIVK >gi|292821292|gb|ACYT02000019.1| GENE 26 22140 - 22700 695 186 aa, chain + ## HITS:1 COG:Cgl1181 KEGG:ns NR:ns ## COG: Cgl1181 COG0711 # Protein_GI_number: 19552431 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Corynebacterium glutamicum # 14 176 19 181 188 94 36.0 8e-20 MHQIVAASDQEVGGLAVILPPLYEIFWSALVLLIVLLLVGRYALPRIYKTMDERAAKIEE GLGAAEQAKADQAAAALKREEIIREAHAEAHTIRERANDEAKAIVAAARHEATSEANRIL EASERQILAEKQAAQISLRSEVGLLASELAEKIIGEHLTDTALTSRVVDRFLDELEADSA RVEEKR >gi|292821292|gb|ACYT02000019.1| GENE 27 22697 - 23515 820 272 aa, chain + ## HITS:1 COG:Cgl1182 KEGG:ns NR:ns ## COG: Cgl1182 COG0712 # Protein_GI_number: 19552432 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Corynebacterium glutamicum # 13 271 13 271 271 80 26.0 4e-15 MTQMRTIESVPFAKELAAALATPGTDPMRVAEDFFGLADLFKENTRLARAATDPARSVAD KQGLASSAFASHVTAAALSVVNAVVADHWRHPADVADTLEVLGILGVLNAAGAQGALEQV REELFQVRYFLAHQREVRVRLSDTSKGDAHERGDVASKLFGEHISIWTMRLVRRAVGRSN HGRLLHNLRRYAQWAATMQDRLFVTVATATLMSEAQVERLRSILSKRYGTDVDLAISIDP EVVGGFRLRAGMTAIDASLASRISAARDAIAS >gi|292821292|gb|ACYT02000019.1| GENE 28 23563 - 25200 2458 545 aa, chain + ## HITS:1 COG:MT1348 KEGG:ns NR:ns ## COG: MT1348 COG0056 # Protein_GI_number: 15840759 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 519 1 518 549 692 67.0 0 MADLSISPEEIRGALDSFMESYRPADVATEEVGHVIETADGIAHVEGLPGTMANELLRFE DGTLGLAMNLDQREIGAVVLGDFGGIEEGQVVHRTGEVLSVPVGDGYLGRTVDPLGRPID GLGEITDLDGRRALELQAPGVMARKSVHEPLATGLKAIDSMIPVGRGQRQLIIGDRKTGK TAIALDTILNQRENWKSGDPNKQVRCIYVAIGQKGSTIASVRSTLEDAGAMEYTTIVASP ASDPAGYKYMAPYTGSAIGQHWMYQGKHVLIVFDDLSKQAEAYRAVSLLLRRPPGREAYP GDVFYLHSRLLERCAKLSDALGGGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSD LFNSNQRPAVDVGISVSRVGGAAQPKAMKKVAGTLKLTLAQYRSMAAFAMFASDLDAATR RQLTRGERLMELLKQPQSTPYAMEDQVASIWMGTKGYLDDIEVEDVLRFERGLLDYLHAN STVLDTIAATGDLTSETEEALKNAVEEFHHQWISAGRGAAGLEDGEVVAERTREEISRGR TSEKA >gi|292821292|gb|ACYT02000019.1| GENE 29 25204 - 26133 1062 309 aa, chain + ## HITS:1 COG:MT1349 KEGG:ns NR:ns ## COG: MT1349 COG0224 # Protein_GI_number: 15840760 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 306 1 301 305 216 44.0 4e-56 MGGQQRIYKQRIASTTTLAKVFRAMEMIAASRIGAARRAATEAGPYEKALTQAVAAVAVH TDLDHPLTEEREDTNRVAILVVASDRGMAGAYSATILRESEKLIADLREDGYEPVLYTFG RRASAYFRFRGVDIEREWEGESDSPSPETAREMANVLLERFLDKDPDTGVGALHLVYTRF KTVMSQVPEVRQMLPLTVVDAPESDEERATERGFADDLSSAQPEYEFIPSAEAVLDTLLP LYVEARIHNVLLQSAASELASRQRAMHTATDNANELITKYTRLANSARQAEITQEITEIV GGADALNAS >gi|292821292|gb|ACYT02000019.1| GENE 30 26159 - 27607 2018 482 aa, chain + ## HITS:1 COG:Cgl1185 KEGG:ns NR:ns ## COG: Cgl1185 COG0055 # Protein_GI_number: 19552435 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Corynebacterium glutamicum # 5 472 12 474 483 672 73.0 0 MTDTHAIAEGRVARVVGPVVDVEFPPDRIPPLYNALTVEVNLAGQGEGESTFTMTLEVAQ HLGDNLVRTIALKPTDGLVRGAPVTDTGAPITVPVGDITKGHVFNVTGDVLNLEEGETLE VTERWPIHRQPPAFDQLEARTKMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEM IQRVAQDHGGVSVFAGVGERTREGNDLIGEMEEAGVFDKTALVFGQMDEPPGTRLRIALT GLTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQER ITSAGGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIAAKGIYPAVDPLASTS RILDPALVGREHYDVATHVKAILQKNKELQDIIAILGVDELSEDDKVTVARARRIEQFLS QNMYMAEKFTGVPGSTVPLSETIEAFKRIAEGYYDDVPEQAFYNCGGIDDLERNAHELAK EA >gi|292821292|gb|ACYT02000019.1| GENE 31 27607 - 27879 296 90 aa, chain + ## HITS:1 COG:RSp0810 KEGG:ns NR:ns ## COG: RSp0810 COG0355 # Protein_GI_number: 17549031 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Ralstonia solanacearum # 7 88 4 86 139 60 46.0 7e-10 MASGKSLQVEVVSHEGRLWHGAAASVQFPTVDGSLGVLPGRQPLLAQLSEGTVTVSRADE VVSFQVTGGFASVDSDFVTVVADHATVAEQ >gi|292821292|gb|ACYT02000019.1| GENE 32 27905 - 28309 342 134 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1309 NR:ns ## KEGG: Bcav_1309 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 8 131 6 133 141 67 34.0 2e-10 MSLMTIVIWCAVLLACVGAILWAYMNVRARRIVSRLGAFRCWSRPDVHSGWTAGIGVYGV EELSWYRLVGLSFKPVYSIPRRGMEVSAPIAHSADGSVVEVRLAYGDHRYEVAVERLTYY GLVSWVESGPPRLV >gi|292821292|gb|ACYT02000019.1| GENE 33 28332 - 29024 674 230 aa, chain + ## HITS:1 COG:Cgl1188 KEGG:ns NR:ns ## COG: Cgl1188 COG1637 # Protein_GI_number: 19552438 # Func_class: L Replication, recombination and repair # Function: Predicted nuclease of the RecB family # Organism: Corynebacterium glutamicum # 1 230 1 230 230 263 59.0 2e-70 MRIVIATCTVDYSGRLSAHLDPAKRVIMLKGDGSVLIHSEGGSYKPLNWMTAPCTVSMGD PGEDEEGVEQVWTVQADKTDDKLIIRIHEIIADVTEDLGVDPGLVKDGVEGHLQELLAEQ VPQILGEGWELVRREFPTPVGPVDLMVRDADGNHVAIEVKRRGGIDGVEQLTRYLSLLGR DALLGDVTGIFAAQEITKQARTLAEDRGIRCVVLDYDAMRGVDDPESRLF >gi|292821292|gb|ACYT02000019.1| GENE 34 29024 - 30130 549 368 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_20890 NR:ns ## KEGG: PFREUD_20890 # Name: not_defined # Def: hypothetical protein # Organism: P.freudenreichii # Pathway: not_defined # 7 353 14 398 410 233 43.0 7e-60 MEASRRVSLGRIIAQGLVPATAERSPLDAVENLAALQGQQASAIPWAIGVRCAGVSRARV EESFARGELVRSWPMRGTVHVTSARDHHWLRRLLRHRRASWERQAFSLGLTDALVERAAQ VACDLLETSPLGVSRAELVEAWGSNGIDTVTASSSQDGLRRRHLIMRLHVDGVLTAGPVR AGEHLIVDARSLPAAPGVAKGEPGHEEALAVLAARYAWGHGPVDEADLARWTGLTLTEAR RALAGACVAGESMGLPLAAFGAGLARADLTDLVEDFRAEAEAMLALPSFDELHVGYKDRS CLTDEAGEALICPAKNGMFRPIAVAGGRVVAVRAPGSQVVAADGCGAYEESARRAFGDWE KWLFETQQ >gi|292821292|gb|ACYT02000019.1| GENE 35 30157 - 31347 1402 396 aa, chain + ## HITS:1 COG:Cgl2593 KEGG:ns NR:ns ## COG: Cgl2593 COG1820 # Protein_GI_number: 19553843 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Corynebacterium glutamicum # 6 361 18 355 388 194 38.0 3e-49 MTTSVLRGRLVLEDTVVEDGIIEFDGATITRVCPVSEYEGEVPEASDSTYLPGLVDVHCH GGGGESFPNAETVEAALVAVLEHRRHGTTSLVASCVTASAEVLRARAKTLAKLAKADELA GIHFEGPFVSHERCGAQDPTYIVDPDADLTRTLIEDCQGYALSMTLAPEKPNAYGPGSVA EALIDRGALPSWGHTDSNSVKAREALAYSRERFAQVETKRGPRATITHLFNGMRPLHHRD TGPIAEFLSDAARGGAVAELICDSVHVDPSLVRDVYELVGREHVVLITDAMAAAGMADGE YTLGPQDVIVKDGVARLARGNSIAGGTAHLMDCVRVAVTKGGIPLVDAVYMASAQGATIL GDDTIGSLAAGKKADIVEVDSDLDVRRVWRRGTVVE >gi|292821292|gb|ACYT02000019.1| GENE 36 31398 - 31640 149 80 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11106 NR:ns ## KEGG: HMPREF0573_11106 # Name: not_defined # Def: ATP/GTP-binding protein # Organism: M.curtisii # Pathway: not_defined # 1 76 19 95 100 73 52.0 3e-12 MERLASVPRMERGPDGGDYQVRRLPGSEKVYTCPACLRPIPVGTAHVVAWPEEAPFGLPQ GVEARRHWHLECWRRGLRPL >gi|292821292|gb|ACYT02000019.1| GENE 37 31793 - 33241 1543 482 aa, chain + ## HITS:1 COG:no KEGG:BDP_1938 NR:ns ## KEGG: BDP_1938 # Name: not_defined # Def: hypothetical protein # Organism: B.dentium # Pathway: not_defined # 1 353 36 377 377 74 25.0 9e-12 MGVVALVCVLVGLLGVTVLRPPTHQVSSVVSSTDLIMTRGNVLSIVKDDVTVTATSKSGA PVTLSIGTTQDVKGWIGDAAYTEVIGVESDRTKLKAESHDAIGPSRVPSPTPAQSGAQSG VQSGAQPLAEPSSADLVQQLASSDMWFKQASGEGTVSLELENVPSGRSALAASAAGPNDL TLTLTWKVEQTNTLAIVAFLAACIFALIALALFLTRWQLLRLRKIREARIEERRKADSLE TSSINSAAVAERIAAAREAAPAAVVASEPAKADEPSVEESEQREADADDQHADNAPTWGA AAFASGKNEAEDDEAPVAEADEMVAEDSAEAEPADEAPVDPAEASDDNAEQAQPIVGISE EYVPDPLTDTFERRGRHGLDNGLIDQDPPERATTDTGVIDLSGIRGGRTLPSRRALREAR NNGEQVVVVDGQEFNTGLIPVTRPRATEQAPAPTAAPDDDASSTGGWTSIMSGWLKDRQE GK >gi|292821292|gb|ACYT02000019.1| GENE 38 33241 - 34239 1280 332 aa, chain + ## HITS:1 COG:no KEGG:BAD_1422 NR:ns ## KEGG: BAD_1422 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 323 1 329 332 78 25.0 4e-13 MKRRTLAAAAAALLMTSALGMSACSNEIVAQSGEEAQSAANLDLERISSVLDATGKAMTT ADASMDASDLSGRVSQGALAYRTAQYAYAKASGQTPQALDFTPASLAITNSDSWPRAIFN ISESSSTALPVVQVYVQDSARSDYQLTNYARLLGGTQLTLPPVGTGSAYVTGTSEGFTVS PEAALAQYITMLNSGTQDTTQFVADDFTKTYLSNVTDLNSSVSAAGSVTAAATATDYPIS GLVLQDGSALVAANFTFTLTYQRTVAGATMNLGGKTATMSADGTTVEGTATAEYLATILM RIPSKTAGGVPQIVGGEYTIVSVTLDPSSSPG >gi|292821292|gb|ACYT02000019.1| GENE 39 34338 - 35240 894 300 aa, chain + ## HITS:1 COG:MT1366 KEGG:ns NR:ns ## COG: MT1366 COG3118 # Protein_GI_number: 15840778 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Mycobacterium tuberculosis CDC1551 # 6 299 4 303 304 94 32.0 3e-19 MTTPDPRPVSVATPMPADSHGAVDLSARASAPTPAESAAPVAGEGLHIPLITTTDEENFQ DVMSTSQAVPVIMVMWSPRSLESKPTLAMLEEIAREQAGKFQLVEVDIDQAPAIAQAFQI QGVPTVVALVGGRPVPLFQGAASKEQVLPIVTQVLDAAAQMGVTARIAVAAEDTVAPTPP EHEAPLAAEAAGNLDEAIAGWQKVIELNPRDEDAKSHLSRVRLAARSAQADATDPAAHAD ALFAAGDAAGAFDVLLDLLAASTDAEERDALRLRLLDLFRVAGSSPEVSKARTRLAMLLM >gi|292821292|gb|ACYT02000019.1| GENE 40 35609 - 35806 92 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189744|ref|ZP_06608460.1| ## NR: gi|293189744|ref|ZP_06608460.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 65 1 65 65 114 100.0 1e-24 MPRGEAAYTEAIAGATTPIMPTTRKRLTNGRIFVFMSDNPSLDLIVTFTLTRYPTGCQDA FMTHS >gi|292821292|gb|ACYT02000019.1| GENE 41 35700 - 35957 124 85 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189745|ref|ZP_06608461.1| ## NR: gi|293189745|ref|ZP_06608461.1| putative lipoprotein [Actinomyces odontolyticus F0309] # 28 85 1 58 58 118 98.0 1e-25 MKTKMRPFVSLFLVVGMIGVVAPAIASVYAASPLGILKNCAYYSESGHCVDWYPNEWTCY NIWNRPHEDYQIARCLAWLGYGSRG >gi|292821292|gb|ACYT02000019.1| GENE 42 35921 - 36133 239 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189746|ref|ZP_06608462.1| ## NR: gi|293189746|ref|ZP_06608462.1| cation transporter, cation diffusion facilitator family [Actinomyces odontolyticus F0309] # 1 70 1 70 70 117 100.0 3e-25 MLGLVGLWFEGVKSVKWLIIAIVFVVVVVWYGWHSTHNELTKKIDRETDPEARRELIKLQ GQIDRGRAGF >gi|292821292|gb|ACYT02000019.1| GENE 43 36243 - 38438 3508 731 aa, chain - ## HITS:1 COG:Rv1326c KEGG:ns NR:ns ## COG: Rv1326c COG0296 # Protein_GI_number: 15608466 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Mycobacterium tuberculosis H37Rv # 18 727 22 731 731 834 58.0 0 MSFELTPIPVNDDILDAVASGSYYSPHSVLGAHLGDDGVTIRVVAHLADAVDIITPTGAY AATHERGGIWVAALPGKEITAYRVSVTYGEDTTVRDDPYRYLPTLGEMDTYLISEGRHED LWKVLGAHVKTYTDELGETTGTAFAVWAPNARAVRVVGEFNYWDGTQTSMRSLGSSGVWE IFVPEVGVGARYKFEIQGPGGNWFEKADPMARATEIPPATASVVTDYFHEWSDQEWMQAR RERNVHDGPMSIYEVHAGSWRQGLGYRELADELVPYVKQMGFTHVEFMPLAEHPFGGSWG YQVTSYYAPSSRYGTPDDFRYLVDAFHREGIGVILDWVPAHFPKDDFALARFDGTPLYED PDPLRGEHPDWGTYVFNFGRREVRNFLVANALYWLEDFHIDGLRVDAVASMLYLDYSRRD GQWRPNQYGGRENLEAIEFIQEANATAYRRHPGIIMIAEESTAWPGVTAPTSGGGLGYGM KWNMGWMNDTLRYLSEDPVNRRWHHGELTFSLVYAFSENYVLPLSHDEVVHGKGSLISKM PGDKWQRLAGLRSLYAYQWSHPGKQLIFMGQEIGQEQEWNESYSLDWWLLDQEGHAGVAA LVERLNKIYTSSPAMWDDDYTGFEWIDASDGDHNLISYLRKGSDDAGNREVVVCISNFAG NPHEGYRVGLPFGGEWVEILNTDSEEFGGSGVVNVGTIIAEDTPWNGRPVSASLRVPPLG AVWLVPASQAR >gi|292821292|gb|ACYT02000019.1| GENE 44 38602 - 40644 2735 680 aa, chain - ## HITS:1 COG:Cgl1197 KEGG:ns NR:ns ## COG: Cgl1197 COG0366 # Protein_GI_number: 19552447 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Corynebacterium glutamicum # 8 667 4 652 675 542 46.0 1e-153 MSEKLLPRIPIIEVFPVIEDGTLPAKATEGEPFPIRATVFREGHDAFAAEAVLLRPDGGE YSRTRMVDIAPGLDRYEAWVAADTPGAWSFRVDSWSDPYASWRHDATVKVGAGVDVELML EEGAHLMERAAEGTAYGNPSQKRPPASDIDVLTDAARRLRDTSHSAQQRLSAGISSRVRL IFRDHPLRDLLDSSRVYPLDVARTKALAGAWYEIFPRSAGAFQRPDGTWVSGTLAGAAKD LPRIAGMGFDVVYLTPIHPIGTTHRKGKNNSLEAAPGDPGSPYGIGSPEGGHDAIHPELG DFDDFDRFVERARGLGLEVALDLALQCSPDHPWVKEHPEWFTTRADGTIAYAENPPKKYQ DIYPLNFDNDPEGIYQAVRDVIELWINHGVTIFRVDNPHTKPIPFWERLLADIKAQYPGT LFLAEAFTRPAMMRTLGAIGFDQSYTYFAWRTEKEEIEEYLREVSEETAHLIRPTFWPTT HDILTPQMWDGGTAIFAIRAMLAALGAPTWGIYSGYEFVENEPRGTYQEPNDNEKYEFRP RRWEDAEPIGISRLFTLLNAARAKHPALRQLHQIRIHPTSSDRLIAFSRQVPGKFTADGK PDTVICVISLDPHNGVDATVELDLEAMGLATPGGHITVVDELDGRSYVWGSSNWVSLSPV TRLGHVFKVEPAHSSPWAQA >gi|292821292|gb|ACYT02000019.1| GENE 45 40829 - 41086 485 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509248|ref|ZP_02044890.1| ## NR: gi|154509248|ref|ZP_02044890.1| hypothetical protein ACTODO_01773 [Actinomyces odontolyticus ATCC 17982] # 1 85 1 85 85 146 100.0 4e-34 MAYNQFPEHPDDSVGSWMLTLFVAGIPLVGFIYMLVLAFGSGGSPAKRNFARAMFIWQII GVVATILAFLLFGGAVMAGLQNSGS >gi|292821292|gb|ACYT02000019.1| GENE 46 41111 - 42211 1745 366 aa, chain - ## HITS:1 COG:DR1093 KEGG:ns NR:ns ## COG: DR1093 COG0180 # Protein_GI_number: 15806113 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Deinococcus radiodurans # 40 364 25 348 351 216 45.0 4e-56 MTRSEDALETATSDASLARSKARSAEIDLAIDQDPSRFRILTGDRPTGHLHLGHYFGTLR NRVLLQNRGVETWVLVADYQVITDRDGVGPIRERVLGLVADYLAAGIDPERSTIFNHSAV PALNQLMLPFLSLVTESELHRNPTVKAELEATEGRAMTGLMLTYPVHQAADILFCKANIV PVGQDQLPHLEQARLIAQRFDKRYGRATPERPVFPRPEALLSEVPLLLGTDGQKMSKSRG NTIELRMTADETAKILKKAKTDAERRITFDPEGRPEVSNLLMLASLATGEAPEAIADRIG DAGAGMLKSLVTESLNEMLAPLRERRAELIANEDYLLSILHAGNERANEQADQTLSEVRT AMQMDY >gi|292821292|gb|ACYT02000019.1| GENE 47 42259 - 44547 3118 762 aa, chain - ## HITS:1 COG:DR0264 KEGG:ns NR:ns ## COG: DR0264 COG1523 # Protein_GI_number: 15805296 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Deinococcus radiodurans # 12 681 7 637 720 567 45.0 1e-161 MSERSGSSSVRTVRVTKPNPVPTRLGVFPSGDGLDVAVVARAASGVDMCIFDEAGAETRF TLLGPKTGIWHGHIPGYGAGTRYGFRVHGTWDPDGGQFYNSHKLLLDPYGRGLDGVVDLK PAVYAHCVDEDLYPSEYPLRRSPIDSAPYMPRSVVVEPSFPIAPQPHVPWETTVIYEIHV KGFTKNMPGVPAELRGTYAGLAHPASVSYLKDLGITAVELLPIHAKCDEPFLTERGLTNY WGYSTLSFFAPEPSYATEASRERGAQAVVDEFRGMVSLLHQAGIEVILDVVYNHTCEGGD AGPTLSWRGLDSDMYYRHTSSRPVQTIDVTGTGNTINVDHPKTIQMVLDSLRYWVREMGV DGFRFDLAATLGRFSTGFSPMHPLLIAMATDDVLAHSKLIAEPWDVGPGGWQTGNFPVPF SEWNDHYRGALRNFWLADVRAQASGHVVSGPNDLATRLSGSQDVFEHGLGRLRGPRASIN FVTAHDGFTLADLTAYDRKHNTANLENNRDGSDDNRSWNHGVEGTLASNGTHPSVDTPYA ILSDLTIADLRSRSQRNILATMFVSSGTPMLTGGDEFGRTQYGNNNAYCQDDPISWVDWD LAESQHAQIDAVSWLIALRKAHPVLRPDRFATGTPHNGDTIADLSWYTAQGTPMPDYGWT DWRHRTFQMLRSGVTWGDRDALIIINANLDSAEVTLPEGHDLDWLVAYSTVWATPAEGGV GSTLNPAELSLEVEHVTPRSTLTIEPLSVTILLSDVAFRPES >gi|292821292|gb|ACYT02000019.1| GENE 48 44741 - 45544 1076 267 aa, chain + ## HITS:1 COG:ML1712 KEGG:ns NR:ns ## COG: ML1712 COG2086 # Protein_GI_number: 15827916 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Mycobacterium leprae # 3 264 4 262 266 142 37.0 9e-34 MRIVVCVKHVPDMQSERRFEGGRLVRGEDDVLNELDENAIEAAVQLKESEEDAGREAEVV ALTMGPEDAEDSLMRALQMGADRAYIVSDEFLEGSDVITTASVLSVAIAKIAEECGPVDL VITGMASLDAMTSMLPAALAAKAHMPLLGLARSLSVEDGAVTIERAVDGYTETVRAALPA VVSVTDQINEPRYPAFAAMKAARKKPLDQWGIDDLVEVPGGEALVMRRALTAVTHGEEKT RDGSGTIIQDAGEGGRALADYILSVVK >gi|292821292|gb|ACYT02000019.1| GENE 49 45546 - 46523 1298 325 aa, chain + ## HITS:1 COG:FN1533 KEGG:ns NR:ns ## COG: FN1533 COG2025 # Protein_GI_number: 19704865 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Fusobacterium nucleatum # 5 323 1 323 323 135 29.0 1e-31 MTQQMSSPILVLADQAGDHLTPPARQAVTLAASLTSADVVALSLAASPDVAALSELGATQ LLHADLGDAVRSSVVASDALVSALATGSFGLVLLCSDYRGREIAGRVGALTEAGVVSGAS SVGFDGGVLQIGKTALGGSWSMRIVIEGQTPIVGIASGVIDEAPVASPVALTPQALAVEL SPEASAIQVVSSVPDEEEGVSLTDASTVVCGGRGVDGDFELVRSVAQALGGAVGATRVAC DEGWAPRSEQIGQTGLTVTPNLYIGLGVSGAIHHTVGMQSSAHIVAVCDDPDAPIFEIAD FGVVGDVTEVVPAALAAIEEARSQA >gi|292821292|gb|ACYT02000019.1| GENE 50 46520 - 47725 1125 401 aa, chain + ## HITS:1 COG:SA1450 KEGG:ns NR:ns ## COG: SA1450 COG1104 # Protein_GI_number: 15927202 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Staphylococcus aureus N315 # 1 377 1 369 380 204 33.0 3e-52 MSVYLDHAATTPLRECALEAWTRAQRDLATTPGNPAALHFGGRRARRMLDDAREQVAAAL GADIHEVIFTSGATESDALGVMAAARGMHGRDDARDLIVVSGLEHDAVAHQREVASREGF SWEVLPVDAGGVSILPRVSGDDAPASWDGRLALGSMTLVSSEIGTIQPVADFAELVQASG GLAHCDAAQAIPTLDVSFAELGLDLLSVGGHKVGAPAGIGVLLARRGIPMTTDRPGGGHE RSIRSGTPDVAGACALGAALAEVVAERAAFASRAAALRAHLLAHLPEGTYSTVGETASSS AIIHLSLPTARPEAVLMAFDMDGIAVSAGSACHAGVTRPSEIVMAMGRSEEQALGVLRVS LGHETTRDDIDAFLAALPVAIRAGAALDGVAHVRNERNEEP >gi|292821292|gb|ACYT02000019.1| GENE 51 47726 - 48817 1293 363 aa, chain + ## HITS:1 COG:Cgl1211 KEGG:ns NR:ns ## COG: Cgl1211 COG0482 # Protein_GI_number: 19552461 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Corynebacterium glutamicum # 1 361 1 363 365 320 52.0 3e-87 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA AEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGFD AVCTGHYAAIVDGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNKAWVRSE AERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLGAAEGEIVTPDGEVLGRHEGYWNYTVG QRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLASDDDGSDAT GLFVQLRAHGTPVPVASLTRDLDAGTISVVLASGARGVARGQSMVIYRGTRVLGEGTIDE TGR >gi|292821292|gb|ACYT02000019.1| GENE 52 49033 - 49506 729 157 aa, chain + ## HITS:1 COG:MT2597 KEGG:ns NR:ns ## COG: MT2597 COG1225 # Protein_GI_number: 15842053 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Mycobacterium tuberculosis CDC1551 # 4 156 7 157 157 166 55.0 2e-41 MSALEIGCKAPDFTAETTQGTLSLSDLLAASSRGVVVYFYPKASTPGCTKQACDFRDSLA SLQGAGYSVIGVSADSMAALERFTEKQSLTFPLASDPDHEILEAYGAWGEKKNYGRTYVG IIRSTVVVNPDGTVALAQYNVKATGHVGRLRKTLGID >gi|292821292|gb|ACYT02000019.1| GENE 53 49568 - 49732 85 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEGSWGALRLMRIGSARDRWRGTIRPTLRLFACTNSRACLRLPAPLSHLSSNRL >gi|292821292|gb|ACYT02000019.1| GENE 54 49990 - 50571 224 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189758|ref|ZP_06608474.1| ## NR: gi|293189758|ref|ZP_06608474.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 193 1 193 193 315 100.0 1e-84 MRVVGAPEQRDGGQCRALAEAASPSEQGGVQSSRVGGASRRQTEARRASEIESRLDRRER ATHRGRAIVIFALGFVSALLIVAAVLGGLFYARSSSVSGLAGAVDSCHAGGVHARLASDG TSLTLEAFSDRGDSLTTPIFQCVLTKLDAPSSVRERMYATRAIDGTRSEEWGSYKATWAY ETEQGLTVIVSSR >gi|292821292|gb|ACYT02000019.1| GENE 55 50678 - 51481 324 267 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 21 231 11 222 318 129 35 4e-29 MSDSQPAAPVAPVAPVGEDVALAIRGLVKIYGNLVAVADLSLDIPTGSFYGIVGPNGAGK TTTLTMATGLLTPDRGTAYVHGVDVWARTQEARALLGVMPDGMRLLDRLSGPDFLVHVGM LHGLDASVARERAHELLAALDLAEAGKKLISDYSAGMTKKVALAAALIHSPRVLVLDEPF EAVDPVSATNIRQILTDYTRRGGTVILSSHVMATVQQLCTHVAIIDKGRVLVSGTTDEVA QGGDLGERFTSLVGGVHSEEGLSWLGN >gi|292821292|gb|ACYT02000019.1| GENE 56 51466 - 53160 1870 564 aa, chain + ## HITS:1 COG:no KEGG:Xcel_0944 NR:ns ## KEGG: Xcel_0944 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 1 561 1 531 532 127 28.0 1e-27 MVGQLIRLKLRIIWNTVRKQTVVLVLAVLGVLYFAGIYGSVLLGTAFLARSDEAYLATPV MPIVGPFIFLLWLVLPIIFASMDNSLDPVRLSPYVGPSKRLGAGLAASTAVGPGGLLSAM ILFLPVWFALWRAQWLEALGWLIAGVVTLPLAVLWARAVGTWFAVRLDSSGKKDAVTALG AVVFMMVVTPLGYWMSLLTRNFSVEAFNAGLNVALWTPFGAPFGVVASLLEGAWVAAAIR ALITVVTAVVGWRAWLAVLRPVMSGYAGEISADAQRAIDEGRHLIDESLEDEARSRRSEQ SRAAGLRSVDLFTRLGLGVRSASLAARTLRYWIVDTRLNMNMALALLFPVVAIFMGRMVT EGQPLAFSAGIFLYLVPITTGLTTGALMQYDSTGAWIVVSSGMSGREERRGRLVGSLIVL VPQVIGYLIHDAVTGANASGFVFHQVMGIVLFAGAAATTLAVNARWVYPVQPPGTSPLAT KGTGSFLMTMLLQLVGFAGTAVLQIPSYVLLVLASFGFVPNWVAYVVALAWSVLVLEAAV RIGGRVWDRYSVAALTSIRSWPGH >gi|292821292|gb|ACYT02000019.1| GENE 57 53906 - 54364 -58 152 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLGVFCRGCGMSKGALGEFCIACGIDAWLSDGKQCDKSLDWRPPRGLRGVAGLRDGAPSE ARGADGERAGRPRGGRRSGGAVGSVDYRNDKFADVGLSASRRTEIWQASRRPESWWATAN TENTNGGTDMKNRRPGGCRLSVRHGGLEPSTR >gi|292821292|gb|ACYT02000019.1| GENE 58 54655 - 55323 610 222 aa, chain + ## HITS:1 COG:MT2858 KEGG:ns NR:ns ## COG: MT2858 COG1321 # Protein_GI_number: 15842326 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 7 220 9 226 228 175 48.0 6e-44 MSDASSNYSAVVEDILKLVWSAEEAGRDGVKPKDVSEHMDVVPSTATENIQRLARQGLVT HERYGRVRLTPQGRAIALGMVRRHRLLETYLHEALGFSWDEVHEEAEILEHAVSDRLLDR LDRVLGYPSRDPHGDPIPRADGSSDDVSGSPLDALDVTAGGIVVRLPDRDPEALRAWKEA GLVPGAHVAVVASDAGGVTVLLKDGQMLLLDSAQASGIVVRD >gi|292821292|gb|ACYT02000019.1| GENE 59 55447 - 55893 639 148 aa, chain - ## HITS:1 COG:Cgl2549 KEGG:ns NR:ns ## COG: Cgl2549 COG0537 # Protein_GI_number: 19553799 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Corynebacterium glutamicum # 1 129 1 132 136 103 43.0 1e-22 MSTIFDNIITGVWPGRFVWADDVCVAFATIEPTSPGHVLVVPRTAYDAWTDAPSDVAAHL MTVARTIGLAQKAAFGVPRAGLAIAGFEVPHTHLHVIPLRDETDILLSKAAPASDEELDS AITALREALLSAGHGRHVPPSMGSAALA >gi|292821292|gb|ACYT02000019.1| GENE 60 56018 - 58948 4585 976 aa, chain + ## HITS:1 COG:Cgl2961 KEGG:ns NR:ns ## COG: Cgl2961 COG0495 # Protein_GI_number: 19554211 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 10 975 12 952 952 1115 58.0 0 MSENPQSAPAQRYTAELAGQIETKWQDRWEELGTFYADNPTGDLAGPLASHNPFFILDMF PYPSGKGLHVGHPLGYIATDTLARYRRMKGDNVLYTMGYDAFGLPAEQYAVQTGQHPAIT TNQNIANMRRQLRRMGLSHDSRRSFATTDIEYVHWTQWIFLQVFNSWFDPEATAPDGSQG AARPISELIAKLESGEIRPEDGSDYNSLDRVAQAKVVDSYRLAYVSEAPVNWCPGLGTVL ANEEVTADGRSERGNYPVFKRNLRQWMMRITAYGKRLSDDLDTIDWPEKVRTMQRNWIGR SEGATVRFDVPGAREAGASLDSLDVYTTRPDTLFGATFMVVAPEHPILGGTVGGDPGDEA ALTLPASWPEGTKDAWTGGAAYPKEAVSAYRAQAAAKSEAERADEERTKTGVFTGLFGID PVNGRPVPIFVADYVLWGYGTGAIMAVPAHDDRDWAFARAYDLDIVRTIGPADDPYGPDL EAGAYTGDGVAVDSANDEIDLNGLVKDEAKAAMIEWLVAKGLGHGTVTYRLRDWLFSRQR YWGEPFPIVWDEDGVAHALPEDMLPVELPEVSDYSPRTFDADDADSSPEAPLGRAEDWVN VTLDLGDGPKTYRRETNTMPQWAGSCWYEMRYTDPTNSERFSGEENLAYWMGPREGKVSG GTDMYVGGVEHAVLHLLYARFWQKVLFDLGHVPGSEPFHTLFNQGYVQAYAYTDERGQYV PADEVEGDETTGFTYKGEPVNREYGKMGKSLKNIVTPDEMYDAYGADVFRVYEMSMGPLD LSRPWDTRAVVGSQRFLQRLWRNAVDEETGELTITDEPADDKTRRLVARTIAEVTEEYEN LRINTAISKLIVLNNHLTSLDAVPRDAIEPLILMLAPVAPHLCEELWSRLGHEASLAREP FPVVEDSSLLVEDTVTAVIQVNGKVKARIEVTPSISEEDLIAAALAEAPIVKALGGAEPL KVIARAPKLVNVVVKK >gi|292821292|gb|ACYT02000019.1| GENE 61 58955 - 59992 1142 345 aa, chain + ## HITS:1 COG:Cgl2944 KEGG:ns NR:ns ## COG: Cgl2944 COG0266 # Protein_GI_number: 19554194 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Corynebacterium glutamicum # 1 345 1 269 269 192 35.0 8e-49 MPEGDAVRRLAGTLDELFVGGMVSASSPQGRFASSAALLDGWVMQRVRVHGKHMFIGFVP PIEGETYEAGVALLEGAAAGSGEPILGEDAPWPDRWVHIHLGLYGWWRFNGDETVVDEGH GVAHRIPNVPKGEWNGHSETRWGEGFGEAKAGEWEPPEPVGAVRLRLFNDHAVADLVGPN RCDLITDEERIKAESKLGPDPLDAGARSDAEAMERFAQVAHSKKRAIGEIVMDQSIIAGV GNIYRADALFLAGISPHRKGANISIKRLRELWVLICDLMNRGLAAGRLDTMDPEEAPNPP IEGDEEASRWYVYHRTDRPCLRCGTPIREALMQNRRLFWCPSCQR >gi|292821292|gb|ACYT02000019.1| GENE 62 60051 - 60542 442 163 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10185 NR:ns ## KEGG: HMPREF0573_10185 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 159 1 163 166 72 33.0 6e-12 MEARTLHAPLDALSAANRPQGIEIATLTTFDIPALAALTLEAYGDDVTPEALLETSEELR LTFEGAFGATTEDSFIGAWDGGTLVGAILVIRESPWDDAPGCPFVVDLIVAPDYRRRGIA TALVSEVATRCSRWGFDSLALRLDTRHGGARELYSVLGFEEIA >gi|292821292|gb|ACYT02000019.1| GENE 63 60628 - 61272 825 214 aa, chain - ## HITS:1 COG:PA3816 KEGG:ns NR:ns ## COG: PA3816 COG1045 # Protein_GI_number: 15599011 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Pseudomonas aeruginosa # 25 197 6 178 258 201 53.0 9e-52 MKLTVRALSKTLSRALPTKALGLFREDLVTAQRRDPAATSALEIALTYPGVHALWTHRVS HALWTHGAHTPARALSSMARAVTGVDIHPEATIGRRVFIDHATGVVIGQTAEVGNDVVIF HGVTLGGVAMTPGKRHPTVGDHVMIGAGAKVLGPITVGTGVKIGANAVVVKDVPCGNVAI GVPARLLPKPEKDTRDRDLIVDPNYFFEEPALYI >gi|292821292|gb|ACYT02000019.1| GENE 64 61365 - 62297 788 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4 305 3 304 308 308 55 7e-83 MARIASTVADLIGGTPLVRINHVAGDGVDVVAKVEAFNPASSVKDRIARSIIDAAEASGA LAPGGTIVEATSGNTGIALSMVGAARGYKVVIVMPASMSVERRAIVRAFGAELVLTDPKG GVSAAVAEAERIASERPGAIIASQFTNPANPAAHVAHTGEEIWADTDGQVDVFVAGVGTG GTISGVAKVLKEKNPNVRIIAVQPTESPLLTGGTPGPHGIQGLMPNFVPETFDADIVDEV ISVETAHALEFARRAAAEEGLLVGISSGAALAGAAAVAARPELAGKKIVTLLPDTGERYL STALFAGLED >gi|292821292|gb|ACYT02000019.1| GENE 65 62334 - 62990 520 218 aa, chain - ## HITS:1 COG:Cgl2074 KEGG:ns NR:ns ## COG: Cgl2074 COG1739 # Protein_GI_number: 19553324 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 9 192 12 195 217 164 46.0 1e-40 MSALRTLTSGTLLTHEIEIKRSRFITTLARTDTPEEARELIDAVKAEHPQARHNCSAYLI DPPDAAPLQHSSDDGEPSGTAGTPMLEALRASDTWNTTAVVTRYFGGILLGGGGLVRAYS TSVSEAVARAPIAYLVGRDILETQLNPGDAGRIEAELRARGAAVIDTIWGADVTLRIAID PSDRDSIDACLAQASSGVAKFRYVETRRIELDEAPSAG >gi|292821292|gb|ACYT02000019.1| GENE 66 63166 - 63336 232 56 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227495349|ref|ZP_03925665.1| 50S ribosomal protein L32 [Actinomyces coleocanis DSM 15436] # 1 56 1 56 56 94 76 2e-18 MAVPKRKMSRANTRTRRSTWKADLTELNTVKVAGREIRVPRRLAKAYKNGLLDVEG >gi|292821292|gb|ACYT02000019.1| GENE 67 63468 - 64739 1548 423 aa, chain + ## HITS:1 COG:BS_yjbQ_1 KEGG:ns NR:ns ## COG: BS_yjbQ_1 COG0475 # Protein_GI_number: 16078229 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 30 410 5 386 400 69 22.0 2e-11 MSLPMSLPAASVGVGHGLFAASSTSDTEGAIVSLFLIAAAAAIAPLLSSLTRKRVPDVVW LLILGVIIGPNVLGLASLTEPISVFREVGMGMLFLIAGTEIDVEEVHGRAGRRSLLTWLA CFGIGLAVSWVAVAASGTTGVATATYIALAIALTSTALGTLLPILMEAGVMGTTTGKAVL VHGAVGELAPIIAMSLLLSARSPWAAAIVLLLFALATVLAVAIPTRFILKHPAIGRTILH GAQTSQKTLMRVVMLVLTGLMALSAVMELDMVLGAFAAGIIVRALAPGNFTMVESELRTL GFSFLIPLFFVTSGMNISLSAVAGYPFLLVAFVGAILVVRGVPIVLLERFHGSIERVGWM DAMRIGLYGATGLPIIVAVTELGVSTRVLPSWLASLLVVAGALSVLLFPLLAFLLGRAGG KAR >gi|292821292|gb|ACYT02000019.1| GENE 68 64836 - 65087 161 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293189772|ref|ZP_06608488.1| ## NR: gi|293189772|ref|ZP_06608488.1| repressor protein CI [Actinomyces odontolyticus F0309] # 1 80 1 80 92 128 100.0 1e-28 MRTEAKQLTKRDIVAANVRTEAARLGYNQVRLGQMLGITQSSVNKQWTGKRPRQLEELDS LASALGVSVVDLVTPTVRETLAS >gi|292821292|gb|ACYT02000019.1| GENE 69 65899 - 66882 1285 327 aa, chain + ## HITS:1 COG:aq_1429 KEGG:ns NR:ns ## COG: aq_1429 COG0685 # Protein_GI_number: 15606607 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Aquifex aeolicus # 21 305 14 283 296 177 34.0 3e-44 MPFSDDTYACPCTHDHEPTLLSFEVMPPRRPSLEEPFWNTVDQLLRVRPDFMSVTYGAGG KDRSNARSTVHRLVRDTPIQPIAHLTCVGNSTEEVVSTVYDYLDSGVRTFLALRGDPPVG QDGWEPGPGGVGSATELIHLIRTVEKRRCDAHPGEALRSAFKPLTIAVAAFPAGNPAAGT TPAQEVERLLVKQAAGASFAITQLFWDAEVYASFVERARRAGVTIPIVPGLLPATDPARL RRVQDLTGIEVPEYLLTTLADYPRQDARDEFGAVFGSRLIHSVLEAGAPGVHLYTFNRSK PVLDILALMGVKPDPLRSQASSPETRA >gi|292821292|gb|ACYT02000019.1| GENE 70 66962 - 68180 1694 406 aa, chain + ## HITS:1 COG:MT1165 KEGG:ns NR:ns ## COG: MT1165 COG0620 # Protein_GI_number: 15840571 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Mycobacterium tuberculosis CDC1551 # 10 401 11 392 759 265 45.0 9e-71 MSAATTQFPTSTILAYPRIGRGRELKRALEAYWAGRITEAELIQAANDLRKENLARLVEL GLNPSDASLADAPSLYDHVLDATILLGAIPPRFAGREGLDLYFALARGDDNVGPEEMTKW FDTNYHYLVPEIGPDTPLRFADDTITRRFTDAREWGYVTRPVLVGPVTYLALAKADPATP DFDPLTRIDEAVAAYEEALASLHAAGAPWVQLDEPALTSDNLSRTRVELGELAARVYERL AASQNRPQILLTTPYGDASHAVGALAKTGVEALHVDTLRGALPKGADLSGVTLVVGAVDG RYIWRADLAQLRETLKAAQALGAAHVAVATSNSLQHVPHDTALETWDDATLNENLHAWLA FADQKVLEVVTLARGVDEGWEAIDAEVAEATRVLEQRAAAPGVVRP Prediction of potential genes in microbial genomes Time: Tue May 17 06:17:47 2011 Seq name: gi|292821283|gb|ACYT02000020.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.27, whole genome shotgun sequence Length of sequence - 9698 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 7, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1079 1607 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 1098 - 1146 17.7 2 2 Tu 1 . - CDS 1367 - 1579 202 ## gi|154509221|ref|ZP_02044863.1| hypothetical protein ACTODO_01742 3 3 Tu 1 . + CDS 1578 - 2009 645 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 2110 - 2162 11.2 4 4 Tu 1 . - CDS 2183 - 3469 1682 ## COG1171 Threonine dehydratase 5 5 Tu 1 . + CDS 3573 - 4202 1058 ## COG1949 Oligoribonuclease (3'->5' exoribonuclease) + Term 4216 - 4266 15.0 6 6 Tu 1 . + CDS 4447 - 5235 364 ## Noca_1368 single-strand binding protein - Term 5075 - 5110 7.4 7 7 Op 1 3/0.000 - CDS 5232 - 5696 304 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 8 7 Op 2 . - CDS 5700 - 9698 5171 ## COG4982 3-oxoacyl-[acyl-carrier protein] reductase Predicted protein(s) >gi|292821283|gb|ACYT02000020.1| GENE 1 3 - 1079 1607 358 aa, chain + ## HITS:1 COG:ML0961 KEGG:ns NR:ns ## COG: ML0961 COG0620 # Protein_GI_number: 15827460 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Mycobacterium leprae # 12 352 418 758 760 460 67.0 1e-129 TDADRAREPYLEREAAQTERLHLPPLPTTTIGSFPQTTEIRKARAANARGELSDADYEAR MREEIASVITLQEELGLDMLVHGEAERNDMVQYFAELLDGFAATRNGWVQSYGSRCTRPS VLWGDVSRPAPMTVGWTSYAQSLTDKPVKGMLTGPVTIIAWSFPRNDLPLGEIADQIGLA LRDEVSDLEAAGIAAIQVDEPALRELLPLDADCHADYLNWSVGSFRLATSSVRPDTQIHT HLCYSEFGQIIDAIKGLDADVTSIEAARSKMEVVPELAEAGFDHGIGPGVWDIHAPRVPG TEELAELIGLAADAVPVSRLWVNPDCGLKTRGYVETKASLDNLVSATRQVRAQRGLES >gi|292821283|gb|ACYT02000020.1| GENE 2 1367 - 1579 202 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154509221|ref|ZP_02044863.1| ## NR: gi|154509221|ref|ZP_02044863.1| hypothetical protein ACTODO_01742 [Actinomyces odontolyticus ATCC 17982] # 1 70 1 70 70 130 100.0 2e-29 MGVSDSSGPHSHYRRGYITAAVIDRGIWGVNHIHIRDIMPPQGQHMGFAKVVMALSLSDG FRPSNMVSTQ >gi|292821283|gb|ACYT02000020.1| GENE 3 1578 - 2009 645 143 aa, chain + ## HITS:1 COG:CAC2435 KEGG:ns NR:ns ## COG: CAC2435 COG0745 # Protein_GI_number: 15895700 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 38 125 134 220 224 71 42.0 4e-13 MTLVNTPAASVRAANDTPTSYEEFLDVLAGLRLSSSRIDIDIDRGQVTLDGRDAGLSAKE HDLLAHLAANADRSVTRDELFASVWADSDLGSDSRTVDAHIRRLRKKLSILPDLISTVRG EGYRFNSTPSVRVRVTRPVTLAA >gi|292821283|gb|ACYT02000020.1| GENE 4 2183 - 3469 1682 428 aa, chain - ## HITS:1 COG:BS_ilvA KEGG:ns NR:ns ## COG: BS_ilvA COG1171 # Protein_GI_number: 16079236 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Bacillus subtilis # 11 428 14 422 422 380 48.0 1e-105 MTASSHVTTPKDIRQAATALEGVSVRTNLDRSERLSTEAGVGILLKREDQQKCRSFKVRG AYARMSLLSPAERERGVVCASAGNHAQGLAYACAHLGVRGTIYLPSNTPRQKRRRIATIG GQWIEQVIVDGTFDRANALAQEAARATGRTYVHPYDDPFTIAGQGTIGVELEEQMPEDTA AILVPVGGGGLIAGIATWLRANRPEVKIIGVEPAGAASMHVALEAGQPMSLAKVDPFVDG TAVGRAGSLPFHIASQFVDSVLVVPEGAVCTEMLELYQSDGVIAEPAGALASTAAHVYLT DPADRKALLGRSDGAIVCVVSGGNNDLTRYAEVMERSLRHEGLRHYFLVTFPQQPGMLRV FLSDVLGPADDIVHFEYTKKNNRELGPALVGIDLSNPDDIDGLRHRMEASPLHVEELPLD SEITRLVI >gi|292821283|gb|ACYT02000020.1| GENE 5 3573 - 4202 1058 209 aa, chain + ## HITS:1 COG:Cgl2421 KEGG:ns NR:ns ## COG: Cgl2421 COG1949 # Protein_GI_number: 19553671 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Corynebacterium glutamicum # 3 196 17 211 219 180 47.0 2e-45 MKDPLVWIDCEMTGLDVQRDALIEVAVVVTDGDLTIVDPGMDVLITPPAEALDNMNDFVR NMHTSSGLLDDLQTSGLSMEEATEQVLSYIKRFVPQQGKALLAGNSVGTDKMFLEANMPS VIDHLHYRLVDVSSIKELAKRWYRVAFAESPDKHGGHRALADILESIQELEYYRRVLFPA EPVTTERAREVAREVVALGIPAMGEAAKA >gi|292821283|gb|ACYT02000020.1| GENE 6 4447 - 5235 364 262 aa, chain + ## HITS:1 COG:no KEGG:Noca_1368 NR:ns ## KEGG: Noca_1368 # Name: not_defined # Def: single-strand binding protein # Organism: Nocardioides_JS614 # Pathway: DNA replication [PATH:nca03030]; Mismatch repair [PATH:nca03430]; Homologous recombination [PATH:nca03440] # 1 139 37 170 185 75 39.0 2e-12 MQDISTTLRGRIGSEPMMKHVKGDVCVTTFRLAMTKWRFTSDARTGNASYVEDGAYWYTV ETWDTLASNVFRSCRKGDPVVVVARPVPNGWIDGNGQIRSSIVYRASSVGHDLARGTSQF TKNGAHATDEPAGGTQGDPYSTRQGPGSAVTAQAGEHQGSLGTDVHAHVAAPDQGTDILP DEAAPSQSEPTPHAPTGAVGVELSVLPALEEHERSEEQSSDPGRSSSSCFDYSALEGGHA DATKNDAFEPLDGDADEPPDAA >gi|292821283|gb|ACYT02000020.1| GENE 7 5232 - 5696 304 154 aa, chain - ## HITS:1 COG:Cgl2440 KEGG:ns NR:ns ## COG: Cgl2440 COG0736 # Protein_GI_number: 19553690 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Corynebacterium glutamicum # 1 145 1 128 135 94 43.0 5e-20 MRGLGVDLVSLPEFAAQVREPGSAFLNGVLTPREARRVRARAAATSGAHPSSARYDEAVA RHAGGLWAAKEAFIKAWSCALFGSPPLIGTDDVDWHEIEVSHDEWNRPALTLHGRVAAAC EESLGAPSTWRALVSISHDGEYAIAQVAIVDASD >gi|292821283|gb|ACYT02000020.1| GENE 8 5700 - 9698 5171 1332 aa, chain - ## HITS:1 COG:Cgl2444_5 KEGG:ns NR:ns ## COG: Cgl2444_5 COG4982 # Protein_GI_number: 19553694 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier protein] reductase # Organism: Corynebacterium glutamicum # 15 834 45 843 843 731 52.0 0 AAEAAPAPAPAAPTGGPSGADVADLPFTASSAIVALLALSAKIRIDEVGATDTTESLTNG VSSRRNQLLMDMSSELGLNSIDGAGEADVATLSATVDKAAKGYKPFGPVLAEAVKERTRK LFGAAGVKAGHIADRVTGTWQLGPGWAHHVTAEIVLGTREGASTRDGDLATLPLEAPTNA AGVDALIDAAVASVAAREGIAVSLPSAGGASGGGVVDSAALDAYAASVTGEDGVLAKTAR TILSELGLNAPAPTGEDSSDDARVIDAVAAELGSGWVDLVEPRFDAARAVLLDDRWASAR EDVARYVAEGTLAEGASFVGTGRAVAEQASYWANSLRAEGDHERAARLEQIAADALSSSE DLPYANDVAVVTGMTPASIGGAVVGGLLAGGATVIATSSSISASRLDFAKELYRTHAAGG AKLWLVPANLASYRDVDALVEWIGTEQTKSVGADVKVTKEALVPTLFYPFAAPRVSGTLA DAGPASENQMRLLLWSVERSIAGLCAIGSDTHADHRLHVVLPGSPNRGIFGGDGAYAEAK ASFDAIATRWAAEPIWGSRVSIAHPRIGWVRGTGLMGGNDPMVAAVESAGVRTWSTEEMA EQLLNLSSAEVRAQAATAPVDADLTGGLDSSIDLRALRAQADAAIPTPPAEQPIATVSAL PSPSQVTVPHVDPSQWGGTTASLADTVVIVGHGEVGPWGSARTRVQAELGIHTDGSVELT PAGVLELAWMTGLLTWSDTPVGGWYDKDDQLVPESEIFDRYRDEVVARSGVRFFHDDGPL HDGYTPESAMVFLDRDITFTVEDEAEAGSYAEADPQFTVIEQTAFGEWQVTRKAGAQVRV PRRATLNRRIGGLFPTDFDPARWGIPASMLDSIDPIAVWNLVSAVDAFVSAGFSPAELLR VVHPATVASTQGTGFGGMRSMHKLFVDRFLGEDYPQDILQETLPNVVAAHTMQSYVGGYG SMINPVGACATAAVSIEEGLDKIKAGKADFVVAGAIDDIQVESIVGFGAMNATAISNELL ARGISPRFVSRANDRRRGGFVEAQGGGTVLLTRASVALDMNLPVLAVVAHAQTFSDGAHT SIPAPGLGALAVARGGRDSVIARNLAELGVGIDDVAFVSKHDTSTNANDPNESDLHTRVG TALGRTPGNPLLVISQKTLTGHAKGGACVFQVGGIIDVFRTGLIPANVALDCVDDAMEKY SPLVWLRSPLNLSSRGPVRAAFATSLGFGHVSGFLALVNPAAFEAIVERKAGRERLEAWR AASDRRLRNGQRHIEMGMLGHAPLFTSVEGRRLPDDPAAGVAGDAHEVEAAILLDPNARL GEDGFYHLPEGK Prediction of potential genes in microbial genomes Time: Tue May 17 06:18:25 2011 Seq name: gi|292821200|gb|ACYT02000021.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.28, whole genome shotgun sequence Length of sequence - 85113 bp Number of predicted genes - 83, with homology - 77 Number of transcription units - 40, operones - 22 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 5240 7132 ## COG4981 Enoyl reductase domain of yeast-type FAS1 2 1 Op 2 7/0.000 - CDS 5285 - 6841 1892 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 3 1 Op 3 . - CDS 6838 - 8631 2019 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 4 1 Op 4 . - CDS 8618 - 9565 876 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 5 2 Op 1 . + CDS 9593 - 9769 58 ## 6 2 Op 2 . + CDS 9841 - 11502 2452 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 11507 - 11563 16.1 7 3 Tu 1 . - CDS 11601 - 11945 86 ## + Prom 12007 - 12066 2.2 8 4 Tu 1 . + CDS 12098 - 14248 1946 ## COG1640 4-alpha-glucanotransferase + Term 14276 - 14313 4.5 - Term 14260 - 14305 10.4 9 5 Op 1 3/0.000 - CDS 14322 - 14795 173 ## COG2190 Phosphotransferase system IIA components 10 5 Op 2 . - CDS 14792 - 15022 330 ## COG1264 Phosphotransferase system IIB components 11 6 Op 1 2/0.182 - CDS 15129 - 16337 968 ## COG0477 Permeases of the major facilitator superfamily 12 6 Op 2 . - CDS 16391 - 17290 738 ## COG0561 Predicted hydrolases of the HAD superfamily 13 7 Op 1 . + CDS 17329 - 19881 2190 ## COG1472 Beta-glucosidase-related glycosidases 14 7 Op 2 . + CDS 19926 - 20537 901 ## Jden_2535 hypothetical protein 15 7 Op 3 . + CDS 20569 - 21579 1405 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 16 8 Op 1 . - CDS 21603 - 22121 295 ## PROTEIN SUPPORTED gi|229255399|ref|ZP_04379326.1| acetyltransferase, ribosomal protein N-acetylase 17 8 Op 2 9/0.000 - CDS 22118 - 23476 1138 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 18 8 Op 3 . - CDS 23478 - 24188 786 ## COG3279 Response regulator of the LytR/AlgR family 19 8 Op 4 . - CDS 24211 - 24456 119 ## 20 9 Op 1 . + CDS 24350 - 25492 1672 ## COG0562 UDP-galactopyranose mutase 21 9 Op 2 . + CDS 25509 - 26447 255 ## PROTEIN SUPPORTED gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 22 10 Op 1 . + CDS 26632 - 28218 2057 ## COG0733 Na+-dependent transporters of the SNF family 23 10 Op 2 . + CDS 28215 - 28376 246 ## 24 10 Op 3 . + CDS 28386 - 29132 1046 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 29153 - 29198 16.5 - Term 28963 - 29000 -0.5 25 11 Op 1 . - CDS 29237 - 30109 749 ## COG0566 rRNA methylases 26 11 Op 2 . - CDS 30119 - 31183 1071 ## COG0167 Dihydroorotate dehydrogenase 27 11 Op 3 . - CDS 31202 - 31756 243 ## HMPREF0573_11811 hypothetical protein - Term 31881 - 31932 15.6 28 12 Tu 1 . - CDS 31943 - 32563 853 ## Bcav_1880 putative integral membrane protein 29 13 Tu 1 . + CDS 32604 - 33995 1838 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 30 14 Tu 1 . + CDS 34106 - 34960 481 ## gi|293189815|ref|ZP_06608529.1| glycerate kinase 31 15 Tu 1 . - CDS 34952 - 35044 90 ## 32 16 Op 1 . + CDS 35046 - 35399 592 ## COG0316 Uncharacterized conserved protein 33 16 Op 2 . + CDS 35419 - 36423 1065 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 34 17 Op 1 . + CDS 36539 - 36931 554 ## COG0784 FOG: CheY-like receiver 35 17 Op 2 . + CDS 36931 - 37986 1178 ## COG0547 Anthranilate phosphoribosyltransferase 36 18 Tu 1 . - CDS 38001 - 39734 1028 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 37 19 Tu 1 . + CDS 39694 - 40605 1172 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 40751 - 40790 5.1 38 20 Op 1 . + CDS 40813 - 42030 1889 ## COG0205 6-phosphofructokinase 39 20 Op 2 . + CDS 42041 - 43480 1473 ## COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase + Term 43563 - 43602 -0.6 40 21 Tu 1 . - CDS 43562 - 45505 1788 ## COG0515 Serine/threonine protein kinase 41 22 Tu 1 . + CDS 45589 - 45942 333 ## Xcel_1996 hypothetical protein 42 23 Tu 1 . - CDS 45958 - 47061 785 ## COG0142 Geranylgeranyl pyrophosphate synthase 43 24 Tu 1 . + CDS 47224 - 48894 2070 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 48958 - 49008 5.4 44 25 Op 1 . + CDS 49021 - 49416 343 ## gi|293189828|ref|ZP_06608542.1| putative ABC transporter related protein 45 25 Op 2 1/0.455 + CDS 49478 - 50719 625 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 46 26 Op 1 1/0.455 + CDS 50822 - 52405 2024 ## COG0541 Signal recognition particle GTPase 47 26 Op 2 . + CDS 52409 - 53515 891 ## COG1228 Imidazolonepropionase and related amidohydrolases + Prom 53548 - 53607 2.4 48 27 Op 1 19/0.000 + CDS 53731 - 54198 410 ## PROTEIN SUPPORTED gi|227875958|ref|ZP_03994081.1| 30S ribosomal protein S16 49 27 Op 2 12/0.000 + CDS 54201 - 54440 187 ## COG1837 Predicted RNA-binding protein (contains KH domain) + Term 54456 - 54498 14.7 50 28 Op 1 30/0.000 + CDS 54530 - 55042 210 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 51 28 Op 2 33/0.000 + CDS 55047 - 56399 1021 ## COG0336 tRNA-(guanine-N1)-methyltransferase 52 28 Op 3 5/0.000 + CDS 56572 - 56928 473 ## PROTEIN SUPPORTED gi|229821019|ref|YP_002882545.1| ribosomal protein L19 + Term 56933 - 56965 -0.1 53 28 Op 4 4/0.000 + CDS 57135 - 57785 466 ## COG0681 Signal peptidase I 54 28 Op 5 . + CDS 57782 - 58453 393 ## COG0164 Ribonuclease HII 55 28 Op 6 . + CDS 58508 - 58807 320 ## Cfla_1477 protein of unknown function DUF2469 + Term 58848 - 58895 7.8 56 29 Op 1 2/0.182 + CDS 58935 - 59375 130 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 57 29 Op 2 . + CDS 59405 - 60919 383 ## COG0606 Predicted ATPase with chaperone activity 58 30 Tu 1 . - CDS 60999 - 61286 72 ## 59 31 Op 1 1/0.455 + CDS 61236 - 62072 480 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 60 31 Op 2 . + CDS 62082 - 62993 497 ## COG0582 Integrase - Term 62778 - 62825 3.1 61 32 Tu 1 . - CDS 63060 - 63611 233 ## COG0739 Membrane proteins related to metalloendopeptidases 62 33 Op 1 38/0.000 + CDS 63998 - 64828 1115 ## PROTEIN SUPPORTED gi|239928672|ref|ZP_04685625.1| 30S ribosomal protein S2 63 33 Op 2 24/0.000 + CDS 64854 - 65681 470 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 65712 - 65757 15.6 + Prom 65710 - 65769 1.8 64 34 Op 1 33/0.000 + CDS 65812 - 66522 780 ## COG0528 Uridylate kinase 65 34 Op 2 7/0.000 + CDS 66561 - 67118 728 ## COG0233 Ribosome recycling factor 66 34 Op 3 2/0.182 + CDS 67118 - 68029 981 ## COG0575 CDP-diglyceride synthetase 67 34 Op 4 . + CDS 68026 - 69306 920 ## COG0820 Predicted Fe-S-cluster redox enzyme 68 34 Op 5 . + CDS 69339 - 69707 313 ## gi|293189851|ref|ZP_06608565.1| putative secreted protein 69 34 Op 6 . + CDS 69704 - 70252 561 ## HMPREF0573_11343 hypothetical protein 70 34 Op 7 17/0.000 + CDS 70252 - 71523 1045 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 71 34 Op 8 6/0.000 + CDS 71526 - 72767 1036 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 72 34 Op 9 . + CDS 72847 - 74052 1444 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 73 34 Op 10 . + CDS 74074 - 74577 523 ## gi|154509147|ref|ZP_02044789.1| hypothetical protein ACTODO_01668 + Term 74614 - 74670 16.4 74 35 Op 1 . + CDS 74686 - 75099 443 ## gi|293189857|ref|ZP_06608571.1| conserved hypothetical protein 75 35 Op 2 . + CDS 75180 - 76988 2667 ## COG0442 Prolyl-tRNA synthetase 76 35 Op 3 . + CDS 76990 - 77481 682 ## COG0242 N-formylmethionyl-tRNA deformylase 77 36 Op 1 . + CDS 77652 - 78155 442 ## Bcav_1800 hypothetical protein 78 36 Op 2 . + CDS 78155 - 78514 365 ## gi|293189861|ref|ZP_06608575.1| putative acyl carrier protein 79 36 Op 3 . + CDS 78650 - 80062 1869 ## COG1027 Aspartate ammonia-lyase + Term 80083 - 80125 15.5 80 37 Tu 1 . - CDS 80134 - 80703 789 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 81 38 Tu 1 . - CDS 80854 - 83598 3790 ## COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component - Prom 83829 - 83888 1.6 + Prom 83810 - 83869 2.0 82 39 Tu 1 . + CDS 83922 - 84323 420 ## HMPREF0573_11425 hypothetical protein + Term 84504 - 84555 22.7 + TRNA 84425 - 84501 84.5 # Val TAC 0 0 83 40 Tu 1 . - CDS 84573 - 85112 729 ## COG1252 NADH dehydrogenase, FAD-containing subunit Predicted protein(s) >gi|292821200|gb|ACYT02000021.1| GENE 1 2 - 5240 7132 1746 aa, chain - ## HITS:1 COG:Cgl0813_2 KEGG:ns NR:ns ## COG: Cgl0813_2 COG4981 # Protein_GI_number: 19552063 # Func_class: I Lipid transport and metabolism # Function: Enoyl reductase domain of yeast-type FAS1 # Organism: Corynebacterium glutamicum # 338 1065 1 717 718 706 53.0 0 MSFVSSLNETPYALTFAGQATPWRAALDEIARDPEIAEIVAGVIKASDQVLSPVRRSLAT QSVASLPFELPAAPESAAVTRDVAGPDEAALSVPGIVAAQLGALIDLTRAGLNIVANQPT AFEGHSQGVLGVEIARAWIAGDEARAASVFALARLIGAAAARITRRARAPHAGDATYMVS VRGVSDALLGRIIDSLPSTSYPLSIALRNDTDTHVVSGAPNDLASLVAAIERAAAKDKAA HDTHERGGRPLTPVCEYLPVYVPFHSPMLTDALALVDEWAAQCGIDAELAHSLGAAVLTT PVDWPSQIRAAAESGATWIIDMGPGATTVRMTHALVEGTGVGVVPAGTASDRDKAATPGW APEPGTDWSYLRPSLVTLPDGKTVVDTAFSRLTGRSPVLLAGMTPTTVDPEIVAAAANAG FWAEMAGGGQVTEEVYNENLAGLRAQLRPGHTAEFNSMFLDRYLWNLQFGQARIVSRSRA SGAPIDGVVISAGIPEQDEALALIAQLRADGFPYVAFKPGTVDQIRKVIAIAREADPIKV IVQVEDGHSGGHHSWEDLSDLLLATYAQLRAQSNIVLTVGGGIGTPERAADFLTGDWSAR YGRPPMPVDGVLVGTAAMTTKEAHTTKAVKELLVATPGVPDNDELGGWVGEGVTRGGMTS GLSHLRADMHEVSNAAAAAARIIADIGSDGAQVRARKDEIVEILSHTAKPYFGDLEEMTY EAWVRRFADLSYPWVDPTWQIRFHDLLQRVEARLAPVDHGEVETLFPTVEDVADAHAAAD RLMAAYPNAATTHVTPIDAAWFPALCRSYPKPMPFVPILDDDLIRWWGQDCLWQAQDERY TADQVRIIPGPVSVAGIDRVDEPVASLLGRFEAAAADRLAASGAVATPVASRLGNGKPAA TREEWLRKVPFISWTGHLMTNPASILDEDRVSLNPTDTGVDMVIHLDTAWDNDPRGAEKH AVRELVFPLVLSGEDGAVPVIDEAKLPQHMYAMLAATAGVTSVSVAGDTVDALPVMVPSA KSVFGEAHYSFTLAPTLGFDHAEATGAALPASYELAAWAPDALLGPAWPAIYAALGSAIH NDYPVIEGLLNAVHLDHSITLEYTPEQMLERGITTIDVTSHVAAVNESSSGRIVTVALEL SANGEYVGSTQERFAIRGRATSNRAPSEAAPFGGANIEVVDSPRSVLRRVTVKAPDDMTP FAIVSGDYNPIHTSYAAAKVAGMDAPLVHGMWLSATAQHAAEAVVAGQGGAQIAGWTYYM YGTVDLNDEVEITVERVGRVVGGGLSLEVTCRINKQVVSRASAYTFAPKVAYVYPGQGIQ SAGMGLDERTKSKAVDEVWRRADAHTRSAMGFSILAIVRDNPTEIVARGVTYRHPEGVLN LTQFTQVALATLAIGQTARMREEGVLVPGAAFAGHSLGEYDALAAYAEVFPLETVLDLVF QRGSTMHSLVPRDENGRSNYRMGALRPNQFGIDDAHVVEYVESIAQASGEFLQIVNFNLA GQQYAVAGTVAGLKALEEDAAKRAAEHGGKRPFMYVPGIDVPFHSTVLRSGVADFRTKLD ERIPAEIDPAKLVGRYIPNLVARPFELTREFAQSILDVVPSETVRELLETEGAWDAALAN PGVLTRTLLIELLCWQFASPVRWIETQRVLLSTEEAAPGVAGLGVDQVIEVGLGAAPTLA NLASRTLLAPEFALSRVDVFNVQRDEPRVYATDVAVIEDEEDEEITPAAPAADAAPAPAR LPPPPR >gi|292821200|gb|ACYT02000021.1| GENE 2 5285 - 6841 1892 518 aa, chain - ## HITS:1 COG:TM0716 KEGG:ns NR:ns ## COG: TM0716 COG4799 # Protein_GI_number: 15643479 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Thermotoga maritima # 16 518 14 515 515 501 50.0 1e-141 MSTPSPLTRDGFIQAQDAIAQAAEEKAAQRQHAKKKLTARERLSLFFDDGVWHEVGQFIG GSVREGRIGSAVAAGFGRVQGRMVAAYAQDFSVLGGTLGKVEGDKIVDLIDRGIRMRIPI VGIQDSGGARIQEGVVALAQYGRIFKKTCEASGLVPQISIILGPCAGGAVYQPALTDFIV MTRENSHMFVTGPDVVAATTGEKVTLDELGGAPIHNFQSGVAHHMADTEEEAIDYVRSLL DYLPSSCEVAPPKYEYIPNPEDEAAARAVADLVPTSARQPYDVRDVVRSLVDHGEYVEIQ DLFAPNVTIGFACVDGQSVGIVANQPMNDAGTLDVDASEKAARFVRFCDAFGLPIVTFVD VPGYRPGTEQEQAGIIRRGAKVIVAYANATVPMVTVILRKAYGGAYIVMGSKSIGADLAF AWPDAQIAVMGAEGAASIMYRRELAAARENGTFEETKAELVARYEEETVNPEISVSSGQL DGIIAPADTRQTIIDSLHLLATKDQRAPHVKRHDNGPL >gi|292821200|gb|ACYT02000021.1| GENE 3 6838 - 8631 2019 597 aa, chain - ## HITS:1 COG:AGl1864 KEGG:ns NR:ns ## COG: AGl1864 COG4770 # Protein_GI_number: 15891049 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 591 1 575 576 464 46.0 1e-130 MRTINRILVANRGEIALRVCRTATDMGIATIAVYADQDMAAPHTREADEALSLGGDDAAS TYLNGEKILAIALETGADAIHPGYGFLSENSEFARAVEDAGIAWLGPASSVIDALGDKIK ARRVAEACGVAPVPGVSEPVTSREEVEAFIASAGYPVVLKRADGGGGRGISIIRSQADLD LFFARHTDASDLGAHFVERFVEVARHVETQSARDTHGNFHVISTRDCSVQRRNQKLVEEA PAPFLPEGAHETLVNASRALFEHVDYVGVGTVEFLLEPDGNIWFLEVNPRLQVEHPVSEE VTGIDLVREQIRIAQGLPLTTPPEPRGHSFEFRVTSEDPSKDLTPTAGRLDEVHWPLGPG IRLELGIDQGDSVQTAFDSMIAKIIVTGADREQALARSRRALAEFSVQGVATPVPVYQDI INDPDFCGVGGFNISTRWFETTFMPTHDYSDLAVPAEASSTADLPRQTYIIELDGRRVSL TLPAGMFNAPAAAAPRPPQPLRSAPRRAGSSAIQAGPHQGAPGDIVAPMQAIVVALAVSE GDQVEEGQLVAVLEAMKMEKPLLAPRAGTVRSLSIKQGDTVTAGTRIANIATEEEAE >gi|292821200|gb|ACYT02000021.1| GENE 4 8618 - 9565 876 315 aa, chain - ## HITS:1 COG:Cgl0689 KEGG:ns NR:ns ## COG: Cgl0689 COG0340 # Protein_GI_number: 19551939 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Corynebacterium glutamicum # 51 295 41 263 269 86 30.0 7e-17 MKYSGRIISPVKHKEDPTGGGMQRAARIPIAGVHSPVYHVSDTSSTLDLAATLLADTTTP TPHLTTIIADRQSAGRGRLGRTWTTPDGQALLASTIVSLPTSFPTKMLGWLVHACALSVR DALSPRLTPVGHTVSLKWPNDVLVDGARKICGILAQLAPASSPFTTSAILGYGINIAQDS DHLATPQATSLYAEGDAEAGADPTSVSHTLLAQILTGLDSRIRGLVTHGNAHDCGLADEA ANALPLLGTRIALAKPTDPNGHPAMEGVALGLSPTGSLLVATDDGRTHDINAGDVLATGL PLTTVHDTKEKRANN >gi|292821200|gb|ACYT02000021.1| GENE 5 9593 - 9769 58 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRFLKTATVFGKSLRIRNQRGTLARSGSGEILTKGAEMRITDPCVPLGGSLARAGSVP >gi|292821200|gb|ACYT02000021.1| GENE 6 9841 - 11502 2452 553 aa, chain + ## HITS:1 COG:MT2552 KEGG:ns NR:ns ## COG: MT2552 COG0488 # Protein_GI_number: 15842003 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis CDC1551 # 1 552 8 557 558 836 77.0 0 MIKARKAIGDKVILDDVTMSFFPGAKIGMVGPNGAGKSSILKIMAGLDEPSNGEARLTPG YTVGILMQEPVLDETKTVIENVRLGAADIFGKLARFNEISEEMANPDADFDALMEEMGKL QTEIDAANAWDIDSQLDQAMDALRCPPPDQPVSVLSGGERRRVALCKLLIEAPDLLLLDE PTNHLDAESVLWLEKHLASYPGAVIAVTHDRYFLDHVAGWIAEVDRGHLYPYEGNYSTYL ETKEKRLSVQGQKDAKMAKRLKEELEWVRSNAKGRQAKSKARLARYEEMAAEAERTRKLD FEEIQIPPGPRLGSVVIEAKDLQKGFGDRSLINGLSFSLPRNGIVGVIGPNGVGKTTLFK TIVGLEPLDGGELTIGETVKISYVDQSRAGIDPDKTLWEVVSDGLDFIQVGNVEMPSRAY VSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETLGSLENAL LAFPGCAVVVTHDRWFLDRVATHILAWEGTEEAPDNWYWFEGNFEAYEKNKVARLGEAAA NPHRVTHRKLTRD >gi|292821200|gb|ACYT02000021.1| GENE 7 11601 - 11945 86 114 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNVAGTYDSQYTIYAQRRLIDISLRFHLDTNSHRAGFYLDDIEVSTQRVDERLFNRHRS PFRAVRSLRFTSHTRCDLRKRQVGSITREILERTTADKSTFHNAGLQPNALSNY >gi|292821200|gb|ACYT02000021.1| GENE 8 12098 - 14248 1946 716 aa, chain + ## HITS:1 COG:MT1831 KEGG:ns NR:ns ## COG: MT1831 COG1640 # Protein_GI_number: 15841250 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 14 713 8 715 724 569 47.0 1e-162 MDTYAPASDNIDELRRIADANGVATGFWDWYGNWVDISASTLLRVLGALGLPLDESSTVG DVHEALRLTEEREWCCTLPPTIVARQGGGYMFPVHVPDGSWVNVQWVLEDGRKGSCDQVD RYVPPRMIDGALVGRATFDVPHWLPLGWHRLIATVEGGHVESATLIIVPNTLSLPLLESS RRAWGVNAQLYSTRSASSWGIGDAADLADLAAICADKGADFLLINPVHASQPVSPLETSP YLPVSRRWLNQIYVRPESIEEYAALPQSAREAIEQLREETRQFASREDLIDRDRAWDAKR KALEIIFAVPRSYHRQSQFDHFVEEGGSELSNYALWCALVEREGTIELPDDLARSSAPRV EMERLELADRVDFYQWCQWVVAEQLGHAQQVAREVGMEIGIMADLAVGVHGYGSEKWSRP ELFASGMSVGAPPDVYSQQGQNWSQPPWSPRSLAESGYLPLRDMVRAALANAGAVRIDHI LGMFRLWWIPDGCVPAEGTYVYYDHEAMMGVILLEAQRAGAVVIGEDLGVVEPWVRDYLR DRGVLGTSVVWFEKEGGGWPLRPEHYRDRALAAVNIHDLPPTLGYIRGIQTTLRSELGLL TDDIETVRAGDRLELERVTARLHEYGCIDGAEPSERETVEALYRYVAKTPSKLVVASLVD AVGDVRPQNMPGTGADLYPNWCVPLCDSDGEEVAIEDLPTDERLTSLFALLRGTVR >gi|292821200|gb|ACYT02000021.1| GENE 9 14322 - 14795 173 157 aa, chain - ## HITS:1 COG:CAC1354 KEGG:ns NR:ns ## COG: CAC1354 COG2190 # Protein_GI_number: 15894633 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Clostridium acetobutylicum # 7 128 13 132 159 93 44.0 2e-19 MSFLVRAPFAAHVLPLSEVPDPVFASGVVGDGRALLPEADCTCVTVHSPINGVVTKLKSH AAIITSTRGPSILIHLGIDTVGLRGRGFAPLVEEGDIVDAGAPLIHWDLGPVRAAGLSPC VPVIVVSPPGEPVSPEFDEALPTAGILDPLFSLSDGD >gi|292821200|gb|ACYT02000021.1| GENE 10 14792 - 15022 330 76 aa, chain - ## HITS:1 COG:YPO1608_2 KEGG:ns NR:ns ## COG: YPO1608_2 COG1264 # Protein_GI_number: 16121876 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIB components # Organism: Yersinia pestis # 7 73 3 69 75 63 49.0 1e-10 MDTATTLVEALGGWDNISNLEACITRIRLDVANTDLIDEAKLREAGAFDVVIVGDAVQVV MGPDSEDLVEQMNASR >gi|292821200|gb|ACYT02000021.1| GENE 11 15129 - 16337 968 402 aa, chain - ## HITS:1 COG:SA1341 KEGG:ns NR:ns ## COG: SA1341 COG0477 # Protein_GI_number: 15927091 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 24 378 35 385 405 117 23.0 3e-26 MHLWAGQTAAQVGFQVGTLATSAIAITVLHATETQIGILSGLQTLAFLLVGLPAGAWVDG WRKRRVMIAANLARIAALVSIPIAYVFSSLALTHLMVVAALLGLSTVFFDVAYQSYVPMI ASKRYIGAANGRLEASYQVGRAGGPGLGGWLLGVIAPPLAYLLTASTYVCSTWAIWRIRT PEPRPAHSDAPLRSQILEGLSFVRGQRLLFPLFACIACAAFAGAGVQVLLPILVLRTLGM SATQLGLLLSAGAIGGILGALTRPLWISRLGIGRCIAITNIGGVVILAVQPASVHVPTAA AWIIAAAGVISSYFLTIYNVTQMSLRQEICPPDMLGRMNAIFRFAVWGVMPLGSFVAGIV AAHTGIEAAMYLFTALAVGAGIAMTFTPAARIRGSSASPTIS >gi|292821200|gb|ACYT02000021.1| GENE 12 16391 - 17290 738 299 aa, chain - ## HITS:1 COG:Cgl2568 KEGG:ns NR:ns ## COG: Cgl2568 COG0561 # Protein_GI_number: 19553818 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 20 275 5 259 271 102 26.0 1e-21 MTDTEVPTHVENESASPHAVFVDIDGTLCDSRQRIPGSALEALAQVRNRGHLLFACTGRS APEVYTRFWDVGFEGLVGGAGGYASVGDRVLVDERMPREHVGMLTALWQELDAFYIWQGP DQMGPSEGYLDFFVPRAGKHPEDWIEYAQSITPFITDINSGAFTKVTAYVPPEKASMERV TAALPDGYRAIIGSVGAAGYVPFEVVPAHLSKAVGIRAICEHVGIPLSHTVALGDSNNDV EAVATAAVGISIGDDCEALVDVADIVAPSVSEDGLAWALRATGLTSDDPSGGQGLGDAR >gi|292821200|gb|ACYT02000021.1| GENE 13 17329 - 19881 2190 850 aa, chain + ## HITS:1 COG:YPO2803 KEGG:ns NR:ns ## COG: YPO2803 COG1472 # Protein_GI_number: 16123001 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Yersinia pestis # 52 706 38 719 793 373 35.0 1e-103 MQNTPRKRQIMRTVDWKGTPWSTLEPSTIPAMEHERQFTTMEHSALTDANDLTLLQAAAL LSGSSAWDSRPLPAAGVPSFVMSDGPHGVRRQLGDADHLGIAESEKATCFPTASAVAATW NPELARDMGEALGLEARGLGVDVLLGPGLNIKRSPLCGRNFEYFSEDPILAGRMAAGLVE GIQSTGTAACPKHFAVNSQELRRMASDSIVDERTMREIYLTGFEIVCREAKPRAIMSSYN LVNGTYAHENKHLLTDILRTEWGFDGMVVSDWGGSNSAVEAARAGGSLEMPAPGLAGARQ IVAAVEAGQLDAADVYARAQEVLNVASASAGLPAPRPYDLGQHHELATRIASEAITLLRN EEDLLPLSAGTSVALIGDLADTPRFQGSGSSQVNPTRVEAPRELLEAGGEGARGLVLEGY ASGYERHGGTSDALIAEAVALAERADVALVYVGLDELAESEGLDRPHMRLPEGQDRLIQA VVAANPHTVVVLTGGASVEMPWVSSVPALVNGYLTGQGGACAMLDVLTGVVNPSGRLAET YALSYEDHPTSAWYPATGPLSYYREGPFVGYRYFTTAGIDVAFPFGYGLSYSSFEYSDLA VNEEGVTLTVTNTSARDGAEVVQLYVSAPGGVFGPARELKGFAKVEVGAGASVSVTIPFD CYTFRHWETSRAAWETEAGTWTIHVGRNVSDTPLSATVEVEGTMPSPIDPALGHYLSADV TGITNGEFAVLLGRTIPTAYPADDLVASDPLSEMTRAKTWLARVAGRKLHALKAKADAKG SPDLNILFILNMPFRAIAKMSNGAASSDMVDAILLAVNGHPLWGLTRAALGFISNARANK ATQRELDQTR >gi|292821200|gb|ACYT02000021.1| GENE 14 19926 - 20537 901 203 aa, chain + ## HITS:1 COG:no KEGG:Jden_2535 NR:ns ## KEGG: Jden_2535 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 1 202 1 202 213 201 55.0 2e-50 MQALTRWWKNFESMHPTVAQFIVFFILSNGITVLQLVLMPAFKVVFAHTSLVDTAFQFLP VGVSHGHTVFLFDYPAGLMSVGGGGGLAYFLAVEITLLIAQVINFFAQRNVTFKSNSSMG KAAFWYAVAYVVITIAAAALQVLYKDPIYAWAIATMGAGGETFADVITMIINAAISFWVF FPIFKVIFKQEPSQEDAQVSAAQ >gi|292821200|gb|ACYT02000021.1| GENE 15 20569 - 21579 1405 336 aa, chain + ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 5 336 3 338 338 272 39.0 8e-73 MSAPLLTVIVPAYNSEDYLDRALTTLVGYGDELEAIIVNDGSKDRTTEIADEWAARYPSV KVIHQENKGHGGAVNAGLAAATGTHVRVVDSDDWLDRRATNAVLDVLREEREAGRDLDLL VTNYVYDKQGKSVKAVIRYRNVLPRGRSFGWADLRRCRYDQYLMMHALTMRTEVVRASGL VMPEHTFYVDYLYSFVPLPYISTIRYLDVDLYHYFIGRDDQSVNEKVMITRLDQLARVNE AMTRALPPRAEVEDKLWRYMVHYLRINAVVCSVMAQLSGTPEHLALKEQIWETMDQINPE ATDRLRQDLLAGLVRHASPTLVRGGYKVAAALLGFN >gi|292821200|gb|ACYT02000021.1| GENE 16 21603 - 22121 295 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229255399|ref|ZP_04379326.1| acetyltransferase, ribosomal protein N-acetylase [Capnocytophaga ochracea DSM 7271] # 1 161 1 165 175 118 37 1e-25 MTIIDTARLRLRPWRAADAPDLYELAKDPRIGLACGWAPHTSIEDAHQALSTVLSSPETY AVTQINGGELVGAIGLRVDNPDVPGVADLGYWIGSPYWGRGYATEAGAAIVERAKALGMT MLTLGYFDGNEASRRVAEKLHFSWIERDDDVEFPLINRHHSLHRMTLQLASR >gi|292821200|gb|ACYT02000021.1| GENE 17 22118 - 23476 1138 452 aa, chain - ## HITS:1 COG:lin0802 KEGG:ns NR:ns ## COG: lin0802 COG2972 # Protein_GI_number: 16799876 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Listeria innocua # 248 443 236 431 433 75 28.0 3e-13 MFESLPDIPRLFTALSEWGAALVYVFVVARSASSNALNPNAAIPRWRLAAAAVGGLVVLV GAQELLGRAPLSLWVPGMMTAYALVWCIIRVGTALDWRWVTHMSARAFIVAELAASLAWQ VVVYSHADKPYWHPLSFGGFAAISATCLAVVYFFERRVYRQGALPVLRYADLASGVVIGI SIFALSNLSFISTATPFSGRSGWEVFYIRTLVDLAGYAILFAQFERIQQSATERELASIQ ASLDAQHHQYLAAKEDMEQVARAHHDLKHQVEAIRAELDPGRAAASFAELESSIEQIGQQ YHSGNAVLDVILTTKGRACAAAGINFTAVADGALLGSMSSMDIATLLGNVLDNAIEASRR VPDPDRRLIKLALFQRGQMTVIRVENWFDGHLNTDAGGRLTTIKQDTVRHGWGVKSIQWT ARQYGGQAITQVENHWFALTVLLPSTTPKEHA >gi|292821200|gb|ACYT02000021.1| GENE 18 23478 - 24188 786 236 aa, chain - ## HITS:1 COG:CAC1581 KEGG:ns NR:ns ## COG: CAC1581 COG3279 # Protein_GI_number: 15894859 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 234 1 232 234 104 24.0 1e-22 MVRIAVVEDEAVSRQLLADYLARYSEEYDVSFDVTYFEDGGAIIGDYKPVYDIILMDIQM THVDGMTAARAIREVDREVVLVFITSAAQFAIHGYQVGALSYLMKPLPWFAFSQELSRCL EAVAKRRRASVLLQSGMSTHRIDVADIVYVESIKHRLDVHTVSDTFSITSTLKAMEEQLA GHDFFRSNSCYLVNLAHVRGVADQECLMTGGDSLRISRPRKKAFMTALASFAGGIH >gi|292821200|gb|ACYT02000021.1| GENE 19 24211 - 24456 119 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWSRRSMTVTFIPNRSAASRANVRPKKPDPTTSRSTPLPFHVSQDNGSGPHLRVRLHVID EAGEWTRAKGGAALTYPCCHL >gi|292821200|gb|ACYT02000021.1| GENE 20 24350 - 25492 1672 380 aa, chain + ## HITS:1 COG:MT3916 KEGG:ns NR:ns ## COG: MT3916 COG0562 # Protein_GI_number: 15843431 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Mycobacterium tuberculosis CDC1551 # 2 377 9 385 399 459 61.0 1e-129 MDLLVVGSGFFGLTFAREAAERFGINVTVIERRDHIGGNAYSSIDEATGVEVHRYGTHLF HTSNERVWSYVNRFTAFNDYRHRVYANYRGVVYPLPINLGTINQFFGAAYSPAEARALIE QQAAEITGEPGNLEEKAISLIGRPLYDAFIAGYTAKQWQTDPRELAGSIITRLPVRFTYE NRYFQDRYEGLPLNGYGAWIANMVDHPRITVHTGVDFFDAASPFSKAATVGQVPVVYTGA IDRYFDYEAGELGWRTLDFETEVVDVPDYQGCSVMNYSDRDVPFTRIHEFAHLHPERDRA GATNTIIQREYSRFARPGDEPYYPIASPSDRSTLAVYRDMAAGEKNVLFGGRLGSYQYLD MHMAIASALTKVDEAVASWR >gi|292821200|gb|ACYT02000021.1| GENE 21 25509 - 26447 255 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 [alpha proteobacterium BAL199] # 1 304 1 305 312 102 27 5e-21 MASIVWSVLSIALIIGVGWVARRAGALGPEAAGSLASVTYWVASPAMLFHAIVSTGTSGV FGAPLAVAAASGAGTALLFVAVARLVLHLTRGETTLGAMASSLNNGAYIGIPIAVYVLGD ASAVVPILVFQLGFFTPMFFVLAELAGSGQRPSARGIATVIARNPMVIAAACGFLFSAAG WSMPTLLEVSTSMLGAAAPPMILLSFGAALMDRRTASDDAGVPAIACAVVAKLAVQPAIA CGVGMLLGLTGPALMSVTIMAALPSAQNAYIAATRARAGERIAQGTVLVTTFASLPVVVG IAAIFHACGVVS >gi|292821200|gb|ACYT02000021.1| GENE 22 26632 - 28218 2057 528 aa, chain + ## HITS:1 COG:PM0718 KEGG:ns NR:ns ## COG: PM0718 COG0733 # Protein_GI_number: 15602583 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Pasteurella multocida # 8 500 3 493 502 431 46.0 1e-120 MSSSASKSAPRARDSWSGQTGFLLAAIGSAIGLGNIWRFPGVSYSNGGGAFLVPYLVALV FVGIPMLWLDYAVGHKFRGSPPWALRKIIGGGEFVGWFQTFVCFVIMVYYGAVLAWGVQY TIYSVNEAWGADPTTFFLESFLEKVPGDTFSWAPAWAVMIPLALVWVLVLFVIGRGLSKG VEAANKVFLPLLVILFLALVVRALFLPGAVEGLNAFFTPNWSALADPKVWLAAFAQIFYS LSVGFGIMLTYASYLKPKSNLTGTALVAGFANSSFEILAGIGVFSAIGFMAHQGGVSVSE VDGLTGPILSFVTFPKIISMMPGGPIFGVLFFSSLVLAGVTSLLSLLQVVSGGLQDKFGW SPARSALVLGVPATVISLVLFGTRSGLNNLDIVDNFINSVGVVSSAIMFAVLCAVAGPRL GALRAHINSVSSVKVPKLWEPLVGIVIPVVLFVMMAMSLVKVLKDGYEGYPSSYILIFGW GSVAVAVIASLIFTLIPWKHRPVDTHTAVAQILADDAEDTASIEGGAK >gi|292821200|gb|ACYT02000021.1| GENE 23 28215 - 28376 246 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAPAIALMILTILLVWGGLVASVVLLQVLSVPTDEETEAAQLAIEAAEAAKQ >gi|292821200|gb|ACYT02000021.1| GENE 24 28386 - 29132 1046 248 aa, chain + ## HITS:1 COG:L165449 KEGG:ns NR:ns ## COG: L165449 COG0561 # Protein_GI_number: 15672552 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 2 245 3 248 252 158 35.0 7e-39 MKLVAFDLDDTLAPSKSPLPARMDVALRSLLDHVEVCIISGGQMGQFRTQVLDNLHATDE ELSRLHLMPTCGTRYYRYEGGAWVERYAHDLDPEVAARAIDSLERHARKLGLWESNPWGN IIEDRGSQITFSALGQEAPLDAKRAWDPDGTKKAALRDAVQPDVPELDVRGGGSTSVDIT TRGIDKAFGMGKLVEETGIPASEMLFIGDRLDPEGNDYPVKAAGYATRAVSGWEECVEVI DEIVASMS >gi|292821200|gb|ACYT02000021.1| GENE 25 29237 - 30109 749 290 aa, chain - ## HITS:1 COG:Rv0881 KEGG:ns NR:ns ## COG: Rv0881 COG0566 # Protein_GI_number: 15608021 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Mycobacterium tuberculosis H37Rv # 13 282 23 275 288 163 37.0 4e-40 MIIELTSADLAADPRLDDYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTPRSFL MSRRWLPTLTNLIEAATGGPDGADVPIFVADEDVLEQMTGFHLHRGALAAMQRPVLPSLD ELLATAHGGTPARRVVVLENLVDHTNVGAAFRSATALGVDAVLVTPQCADPLYRRSVRVS MGTVFQIPWTRLDSWPGDITALQEAGFTVASLALSDDSVSLDDFASLPALQGPGARLAMV MGTEGDGLGHRTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATRGVGAQ >gi|292821200|gb|ACYT02000021.1| GENE 26 30119 - 31183 1071 354 aa, chain - ## HITS:1 COG:Cgl1482 KEGG:ns NR:ns ## COG: Cgl1482 COG0167 # Protein_GI_number: 19552732 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Corynebacterium glutamicum # 74 343 71 339 371 238 47.0 1e-62 MIRRAYNWAFTHFISRSNPEDAHHWGLGAISLAGRFAPTRGLMRATLGYLDPTHSPTRMV GGVEVPLTLGERHLPSRLGLAAGMDKDAEAVLGMCALGYAFVEIGTVTPRPQPGNDAPRL WRLMEERGLRNRMGFNNAGADAAAEKLRELRSTPAGRATIVGANIGKNKVTSEADAPADY EYCAKTLAHWVDFVVVNVSSPNTPGLRDLQSVDHLRPILQAARRGCEAGAPDRTMPLFVK IAPDLADEDIVAVVELTKELGLAGVVATNTTINHDLGEGGVSGAPLLPRALEVVSLVARH LDDDQILIGTGGISSPEDALRMISAGADLVEAFSAFIFEGPSWPGEVSRALQRA >gi|292821200|gb|ACYT02000021.1| GENE 27 31202 - 31756 243 184 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11811 NR:ns ## KEGG: HMPREF0573_11811 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 24 184 53 219 219 69 30.0 5e-11 MHTTVTLPATADVMLDEEEPCPEGMYGPPRWLEDRGISSLLAPYLCDGWDLGDYARFADL SGTDARRLASLLPKDARNDRQNNAPRIIDLLRAASRIDGLTLEGYVIRAPRRDERVSIDT VLVPESAIIAHTGSPIDEERYPSYQHWLTLASALGLGEDAIPPDEMRALIRDGSATRWWW AWWD >gi|292821200|gb|ACYT02000021.1| GENE 28 31943 - 32563 853 206 aa, chain - ## HITS:1 COG:no KEGG:Bcav_1880 NR:ns ## KEGG: Bcav_1880 # Name: not_defined # Def: putative integral membrane protein # Organism: B.cavernae # Pathway: not_defined # 1 205 1 204 205 130 39.0 4e-29 MFGRSKNNNDDASMNVEPVSTTPDGKKGRPTPKRKAAEAARIRPLVPKDRKEAKRAARAA RNARFDAEQRAMITGEEKYLPARDKGRARRFVRDYVDARHSFSEWILAVMMVSIILIMVL SMLGNKIPLHYQAYMLYGSSILMYGSFIVTAIEAFFVWRTIKRVFTEAHPREDIPSGTAY YAFSRMIMPRRWRSPRPQVDRGQFPK >gi|292821200|gb|ACYT02000021.1| GENE 29 32604 - 33995 1838 463 aa, chain + ## HITS:1 COG:MT2598 KEGG:ns NR:ns ## COG: MT2598 COG0624 # Protein_GI_number: 15842054 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 5 440 10 440 470 327 43.0 3e-89 MVYPSRMADTSHAPSTSVLKERLEAAFPSLLEELTQLVAIPSVSSDPAHAADVERSAEHI RERFAALGLEAKVLRETAADGTEGKPALVAHTPHIEGAPTVLLYAHHDVQPVGELSRWSM DPYKAEVRGDRIYGRGSSDDGAGITVHLGSLSILGEDLPVNVVVFIEGEEEIGSPSFTAF LDAHKDELAADVIVVTDSSNWKVGEPAVTSTLRGNAIVTVDVTVADHAVHSGAFGGPLLD SVAISSMLIASLFDEKGDVAVPGLGGSDHADVDWPEEELRAAAGMVEGLQLAGSGDIAAR MWTKPSISVIGFDARPVSNASNTIAPHTRFRLSMRTVPGVDPTEAQAKLVDYLLSHAPFG ARIEVTTEDAGAGYQADMDSPVTKALHESLTEAWGVPSVNIGVGGSIPFISDFQRIFPNA QVVVTGVEDPLTNAHSEDESQSISDLKAAILAEALLLTRVASL >gi|292821200|gb|ACYT02000021.1| GENE 30 34106 - 34960 481 284 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189815|ref|ZP_06608529.1| ## NR: gi|293189815|ref|ZP_06608529.1| glycerate kinase [Actinomyces odontolyticus F0309] # 1 284 39 322 322 449 99.0 1e-125 MLTVPFGTGPTFDEAVADLRSQASFVRVPTRASSSRDAGERVADLLRNGGTVIVEGGHNS SPDCGAGFLEGLLDVPGIDPRKPEAFADALTLAQSLVAEAGVDLVCAASTARPLLGLDSV LAVAPDLEPIEAQDTALTAALTQAFAHRPLGRHQLLDGADVHPARQRGSGAGGGVGAVIA AIGGRIASTGDLLLSLLGLEAIIDGVDLVIVAEPELASPVLAESTLDCVARVAATHALPV VAITHRSSLSHFEKAEWGLHGVFETEGSVTLEDAGRRVARTWLR >gi|292821200|gb|ACYT02000021.1| GENE 31 34952 - 35044 90 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLFVTNRCIRLTHYSPAGALRHGWSARLA >gi|292821200|gb|ACYT02000021.1| GENE 32 35046 - 35399 592 117 aa, chain + ## HITS:1 COG:ML0871 KEGG:ns NR:ns ## COG: ML0871 COG0316 # Protein_GI_number: 15827394 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium leprae # 3 117 4 118 118 167 70.0 6e-42 MSESAIQAPTHEVILTDVAAAKVKSLLEQEGRDDLRLRIAVQPGGCSGLIYQLYFDDRTL DGDAIRSFDGVEVVVDRMSVPYLSGATIDFADTIERQGFTIDNPNAQNTCACGESFH >gi|292821200|gb|ACYT02000021.1| GENE 33 35419 - 36423 1065 334 aa, chain + ## HITS:1 COG:VCA0661 KEGG:ns NR:ns ## COG: VCA0661 COG0545 # Protein_GI_number: 15601419 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Vibrio cholerae # 53 188 26 156 157 86 36.0 5e-17 MMSSLRRLGALAGAAALVLGLAACTDATSSSSSSSPAADIDYSACATDDSVEQNTNVDRS GTGDFPSVSGEDTPVIAAGSGSQPTSKVLVKTLKQGDGAVVCPGARIKANYVGALWDGTV FDSSYQRGDASEFSLNQVVKGWTYGLAHTHVGDRVELVIPASLGYGGQARGNIPANSTLV FVVDIVGVATQDVADDSVLSSAVATGEELPAGITVSGDPGAEPTLTIDESVAAPTEQKTY SIYKGAGEALTSDQTVLYKQVVGGFGAKGQTQSSWSQDPLEAPVAQADLAGVTVGSRILI VVPIPPQEAQSGQEATPAQATVFVVDIVGTSSMQ >gi|292821200|gb|ACYT02000021.1| GENE 34 36539 - 36931 554 130 aa, chain + ## HITS:1 COG:MT3230 KEGG:ns NR:ns ## COG: MT3230 COG0784 # Protein_GI_number: 15842719 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Mycobacterium tuberculosis CDC1551 # 2 128 4 130 133 95 41.0 2e-20 MSEETVTILVFSDDKDRRHAVVNGIGLRASKDTPRIEWVEAATGFGVRDAFDQQDFAMLI LDAEAKKEGGMSIAQDLRETRDGVPPIVFLTARAQDEWLATWAGAAAIVADPIDPIILQE TVADVLRGAK >gi|292821200|gb|ACYT02000021.1| GENE 35 36931 - 37986 1178 351 aa, chain + ## HITS:1 COG:MT2248 KEGG:ns NR:ns ## COG: MT2248 COG0547 # Protein_GI_number: 15841683 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 6 346 4 341 347 220 47.0 3e-57 MATQEWASIIAALTAGESLDYGQSYWLMDQVMSGELGEARLASFLTAMAIKGATVDEIHG LADGMQDHAAHVALPSRALDIVGTGGDGYKTVNISTMSAIVLAAMGIPLVKHGNRASTSK SGSADVIEALGVNLDLDVDALRRVFDEVGIAFLFANKMHPSMRFAAPVRRALGFATAFNV LGPLTNPARVQACAIGASREENARLMAGVYASRGLSALVFRGANTGLDELTTTDANQVWL VSGGAVVETAFDARESLGMASASIEDLAGGEAAENAGVARDVLSGGGADAVRDAVALNVG AGILAWEGLENPVTHSDFEPRMRGAVESALAALTDGSGARLIERWVAASNA >gi|292821200|gb|ACYT02000021.1| GENE 36 38001 - 39734 1028 577 aa, chain - ## HITS:1 COG:MT2247_1 KEGG:ns NR:ns ## COG: MT2247_1 COG0847 # Protein_GI_number: 15841682 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Mycobacterium tuberculosis CDC1551 # 56 236 35 217 232 134 47.0 4e-31 MTKRTPVRDCGETIAPGESARPFARSVVSAALSRASSVELQPSLDAVGTPTSGGHWVVVD LETTGLGAGAEITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVADADPI ASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRVVDTLALARLAL PRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILLGFIDLLAAAGATDVEDLIVLT DQAPARRPSTPDFVTDLPTSPGVYHFIDTAGGTLYVGSASSLKSRVGSYYTKAEKRPKVQ RMVSLAAGVRPYPTASILEARIRELRDIKALVPPYNSASRRQGSLHWVIAEADRPRVVSS VTLDDLPNALGPFGTRAHAQRAAGAIARVLAQADHDSSGAILDEAVEASSLAVPNALTSL MERLSTQGLFEAAAGARDELSAYITGVERATMRPILAAPRIVWGARRDGGEPGWILHVAS YGRHLSSVVVPPRSDPSPWIDVLTSTEPIETGGMAASVASWAETSLLCAELCREGTRLVE WNGPLPWAQPVDSPLRDGRLRELLAHATAQQRHDPRT >gi|292821200|gb|ACYT02000021.1| GENE 37 39694 - 40605 1172 303 aa, chain + ## HITS:1 COG:ML0892 KEGG:ns NR:ns ## COG: ML0892 COG0204 # Protein_GI_number: 15827414 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Mycobacterium leprae # 46 262 13 229 244 236 54.0 3e-62 MVSPQSRTGVRFVIQLILIRSRARAPVETSGVTVAFYQALKATGSPILKAAYHPWIRGKE NIPAEGPAILASNHNAVWDSVFLPMMLDREVVFMGKADYFTGTGLKGWMTKEFMRAVGTI PVDRTGGRASEAALKAGLKRLREGKLFGIYPEGTRSPDGRLYRGKTGVARLALLSGAPVI PVAMIGTHAAQPIGQKIPSRTNIGMVIGEPLDFSRYRGLDKDRYVLRAITDEIMYNLMLL SGQEYVDMYAADVKAQLAAEGAFEGPVPSNGRPAPGGRTAPEVPVPTAPEEEGIEDEKAS DKE >gi|292821200|gb|ACYT02000021.1| GENE 38 40813 - 42030 1889 405 aa, chain + ## HITS:1 COG:AGc3836 KEGG:ns NR:ns ## COG: AGc3836 COG0205 # Protein_GI_number: 15889397 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 403 112 514 514 489 58.0 1e-138 MSVRRVALLTAGGFAPCLSSAVGGLIERYNEIDPTVEIIAYQNGYHGLLTGNYVLVDEEA RKHAAVLHRFGGSPIGNSRVKLTNKKNLVERGLVSEDEDPLQKAAEQLRADGVDVLHTIG GDDTNTTAADLAAYLEEHDYHLTVVGLPKTIDNDVVPIRQSLGAWTAAEEVSEYSQNVIG EHRSNPRMLIIHEIMGRHCGWLTAAGSKCYHDWLKTREWVPSIGLSQERWDIHAIFLPEM KIDLDAEAARLKAIMDEQGNVNIFLSEGAGVPEIIAEIEAAGGEVQRDPFGHVKLDTINP GQWFAKQFAEKIDAEKVMVQKSGYFSRSSRANADDLRLIKSMTDLAVECAFKGESGVIGH DEEDGDRLKAIPFPRIAGGKPFDISQPWFLEMMAEIGQTVEPAGE >gi|292821200|gb|ACYT02000021.1| GENE 39 42041 - 43480 1473 479 aa, chain + ## HITS:1 COG:PA2843 KEGG:ns NR:ns ## COG: PA2843 COG3200 # Protein_GI_number: 15598039 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Pseudomonas aeruginosa # 27 473 5 445 448 475 53.0 1e-133 MIPSITPGRGGEPVRKPRSRRVPERLWSPESGERAPWDTWRGLDAAQQPSYADAEHLRDV TAQLRRQPPLVFAGEVDDLRTWMGAAARGEAFVLMGGDCAETFAEATADHVRLKIQTLLQ MAVVLTYGASLPVIKVGRIAGQYAKPRSSDMETRDGVALPSYRGDAVNSFEFTPEAREPD PQRLLSLYNHAASTLNLIRAFTKGGYADLRQVHRWNQGFMSNPAYARYESLAEDIHRAIK FMGAAGVDFETLRDVDLYSSHEALLLEYESAMTRIDSRTGEPYNTSAHFLWAGERTREEE GAHIELLSRVRNPIGVKLGPSTTPDQMLSLIDRLNPDGEEGRLSFITRMGAGRIREALPP LLEAARKDGRPLTWMTDPMHGNTITSSTGYKTRRFETVMDEVRGFFEAHEASGTVPGGLH VELTGDDVTEVIGGSEHIDDESLRDRYETLVDPRLNHQQSLEMAFQVAQYLAKCSSHEE >gi|292821200|gb|ACYT02000021.1| GENE 40 43562 - 45505 1788 647 aa, chain - ## HITS:1 COG:MT2232 KEGG:ns NR:ns ## COG: MT2232 COG0515 # Protein_GI_number: 15841666 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis CDC1551 # 11 309 8 301 399 228 47.0 3e-59 MSDEQTFDQTDPLIGLLVDERYRVTRRLARGGMATVYIAQDERLDRPVALKVMHPHLADS EDFVARFRREARSAARIVHPGVVSVFDQGVVTGQGFLVMELIDGTNLRQLLRAQGAFTIP QALRYTTDILEALRAAHRVGVIHRDVKPENILVPTDGPAKVTDFGLARAASEVSMSSTGN MLGTVAYIAPEIATTAQADARSDIYSVGIMLYEMLTGSVPWADESPLQIATHHVSDDVPS PSKAQPWIPREIDDLVAALTARDPASRPADASDAIDLVTRAAAAIPSELANRRADIAPAD RAGASETSALNTELMSAQFTRPLPLPAPSTVATVHTSAPLPNASENGGTKTYKRAALWAT LVVLLLAAAVVGGRWWWTEYGPGSYLTMPATDGRPLADVQAELNAMGLASSVEEEFSDDV AAGSITRSDPGGGEPVHKRAEVQLHVSKGVDMKTVPDVVGKNQEDARKALTDVGLALGAI TDAYSEDVPQGQVISQSQASGSQLAHDSAVDVVLSKGREPLTVPSLNGMNADAAKSSIEG LGLVAAPTEAFSDTVAEGQVISQQTNEGTILHRGDTVAYTVSKGPEKVAVPNVVGRQRQD ARAALEAAGFTVQEEAILGGFFGTVRQTDPAAGTMLKKGSVVTITIV >gi|292821200|gb|ACYT02000021.1| GENE 41 45589 - 45942 333 117 aa, chain + ## HITS:1 COG:no KEGG:Xcel_1996 NR:ns ## KEGG: Xcel_1996 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 9 117 13 123 123 78 42.0 9e-14 MTSVDIAVLSTDEVCRLLGIEERRLKQLIRDRVLIEARDASGARGVPQEVIVKGDNGWEP LPFLQGTLTLLADDGFTAEEAAAWLYTVQDELGERPIDALTSGRHHRVNRIASTLAF >gi|292821200|gb|ACYT02000021.1| GENE 42 45958 - 47061 785 367 aa, chain - ## HITS:1 COG:Cgl2124 KEGG:ns NR:ns ## COG: Cgl2124 COG0142 # Protein_GI_number: 19553374 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Corynebacterium glutamicum # 46 366 52 365 366 151 38.0 2e-36 MTLSDSFATLRPFIDEATATSLAHLLARAGTSDRSEEFSRAVLASVSGGKRFRALMAHVG YALSSGTSIEEVSLPHLSAALELYQASALVHDDIIDKADERRGMPSPHRTLANYHTAQSW IGSSTDFGRHGAILVGDFLFSAATAAADEQALTLREDCARAFSRRFADMHAEVALGQYLD ITAEQTPLDPERTDALSTSDSLEVALHKSAHYSVVHPALLGAICGASSFDRVADLLDVLE TLLTPWGLAFQLRDDDLGVFGDPAVTGKPAGDDLREGKRTALLALTWEASSPAERRALTD VLGVAEASPEQIATATDIVERNGRAAHEAEIARLVADGHAALEASTFDEDARAMLRELCS ILTARRA >gi|292821200|gb|ACYT02000021.1| GENE 43 47224 - 48894 2070 556 aa, chain + ## HITS:1 COG:ML1022 KEGG:ns NR:ns ## COG: ML1022 COG0568 # Protein_GI_number: 15827492 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Mycobacterium leprae # 50 556 58 574 574 427 54.0 1e-119 MSASRASAKDSATTEETTEVKTPAKKAARAKKAAATVDAASAPAEEKKSAAKKAPAKKAP AKKAPDAADVEPKASAPKATAKKTTKKADDAGETGKKAPAKKTAAKKTAKKAADAAEAAE KAPARKKAGKKTAKKATDASEENTTKKPAAKKTRGRKKKEEEIVEEAVEELVDTVDEDFE PTGEDLEDPELGTETVDEDDVDAEDEAEEEDPKLAEGAALRERTNDGIHVKGGFVVSDSD ETDEPVQQVTVAGATADPVKDYLKQIGKVSLLNAEQEVDLARRIEAGLYAEYKLKNQADE MTSRERRELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAV EKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGR EPTPEELAKELDMTAEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADAVS FTLLQEQLHHVLDTLSEREAGVVSMRFGLGDGQPKTLDEIGKVYGVTRERIRQIESKTMS KLRHPSRSQVLRDYLD >gi|292821200|gb|ACYT02000021.1| GENE 44 49021 - 49416 343 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189828|ref|ZP_06608542.1| ## NR: gi|293189828|ref|ZP_06608542.1| putative ABC transporter related protein [Actinomyces odontolyticus F0309] # 29 131 29 131 131 178 100.0 7e-44 MLEGALILVLTVVLVLVVAGGVVAVLALSRRSADEWKGVIKRESEEIADEVKTHHSLPKR TSSSPDGPVVPRTASLHSLLQSADSRSAYFDADRLPGIDRLETVTDRVSVRFDRGRRSAD GGGESVQESTQ >gi|292821200|gb|ACYT02000021.1| GENE 45 49478 - 50719 625 413 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 137 407 52 319 336 245 47 6e-64 MDAFVSTLQSPWAVVIALAVAVLIGVVIRLVVSSRRRSSRDVTPQPQAQASVEARPDSPT EAPLDTADQPRAGPVDELAPTPEQSSEAPATPASSIERPEPVRGRMERLRERLASSGSLG RAILGVLSRGQLGAADWEEIEESLLIADLGLEATDTLMEALKRRVAVESVTDEARIREIL REELLELVDPAMDRSLNLERPEVDGSGKPAVVLMVGVNGTGKTTTVGKLARILVAEDKSV ILGAADTFRAAAADQLATWGERVGVDVVRSDREGADPASVAFEAVREGVDRDVDVVLVDT AGRLQNKSTLMDELGKIKRVMTKQAPVSEVLLVLDATTGQNGMKQAEVFAEATGVTGIVL TKLDGSAKGGIVVSVQRALGVPVKFVGLGEGADDLAPFDPQGFVDAIVGSAQG >gi|292821200|gb|ACYT02000021.1| GENE 46 50822 - 52405 2024 527 aa, chain + ## HITS:1 COG:Cgl2009 KEGG:ns NR:ns ## COG: Cgl2009 COG0541 # Protein_GI_number: 19553259 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Corynebacterium glutamicum # 1 464 1 475 547 486 56.0 1e-137 MFGNLSDRLSQSFRSLRSRGVLTESDVDHAISDIRRALIDADVALPVVRQFTTQVREKAY GAARSKALNPGQQVVSIVHEELVEILGGATRELTFAESGPTVFMLAGLQGAGKTTLAGKL GKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGVKVWAPEPGNGVGDPVEVARSGVEF ARQSGINVVIVDTAGRLGVDQEMMEQAIAIRDAVNPHEIMFVLDAMVGQDAVSTSTAFRD GVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHADRMAGRILDMG DILTLIEQAEKKMDAEEAEKVAAKAMAGQLTLGDFLSQLQQIKKLGSMKKMLGMIPGAAQ MREQIENFDEREVDRVEAIVRSMTPAEREDVSILNGSRRARIARGSGTTVTEVNQLVQRF EAAREMMAQMGQMGGGVPGMGALPGRGGKAKQKANARKAQAQRARMKKSARSGNPAKRRQ QELEAMLPPSERSAPQGSSFGVAQEAPAPRPTIDDLPDDVKRMLGQL >gi|292821200|gb|ACYT02000021.1| GENE 47 52409 - 53515 891 368 aa, chain + ## HITS:1 COG:Rv2915c KEGG:ns NR:ns ## COG: Rv2915c COG1228 # Protein_GI_number: 15610052 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Mycobacterium tuberculosis H37Rv # 24 359 32 365 370 228 40.0 1e-59 MEFSGLALWADNESERPSWVRGTWRVDGGVIRRVSEVENAPSEGFVVPGMVDTHCHIGYS ESGSVSEAEMVEQARATLASGVTVARDCGVPVDNSLAARATGLHLIRCGRHVARPKRYMR DLPLDVDDQSVLPAVLASMAHSSDGWVKIVGDWIDRSAGADSDLMPLWDPAVLTDAVAAV HEAGARIAVHAFSHRVIDSLIEAGVDDIEHGSGIDADQANEIAARGIAVTPTLRQVELFK DFAAQAGAKYPVYAATMRAMYDERRSHFEMLVDSGVLLLMGTDSGGYQDHGTIAGELDLW LRWGAPAEFTIDAATWVSQRYLGYPGLVEGGPADFLILDEDPRANPTILANPVRVTVGGT PIWERLSS >gi|292821200|gb|ACYT02000021.1| GENE 48 53731 - 54198 410 155 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227875958|ref|ZP_03994081.1| 30S ribosomal protein S16 [Mobiluncus mulieris ATCC 35243] # 1 154 1 156 159 162 58 5e-39 MAVRIRLKRVGKIHAAQYRVVVVDSRKKRDGRVIEEVGYYDPQPNPSIIRIDSERAQYWL GVGAQPSDQVRKLLVLTGDIAKFNGKADAVSRVIVSEADKAAQAEQAIKDAEAAAEKSKA AASAKKAEEEAAAAAAAAEAEAGEQASEEAAGEDA >gi|292821200|gb|ACYT02000021.1| GENE 49 54201 - 54440 187 79 aa, chain + ## HITS:1 COG:MT2976 KEGG:ns NR:ns ## COG: MT2976 COG1837 # Protein_GI_number: 15842451 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Mycobacterium tuberculosis CDC1551 # 1 78 4 80 80 73 60.0 6e-14 MLADALEHLVSGIVDHPEDVEVTPRSMRRGQLLEVRVNPEDLGRVIGRGGRTARALRTVM GALSTRGAVRVDVVDTDRE >gi|292821200|gb|ACYT02000021.1| GENE 50 54530 - 55042 210 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 8 161 10 168 179 85 40 8e-16 MQLTAAIVGPAHGLRGEVIVDVRSDDPEVMAPGSRLDIAGDQRSLTVRTVRVHKDRVLAS FEECVTREDAEALRGARLLVDAHPEEDAWYPHELKGLQARTPSGDVLGTVSGLTPGVAQD LLLVATDRGTVMVPFVTALVPTVDVEGGFVVIDAPPGLFDEDAVSEREGD >gi|292821200|gb|ACYT02000021.1| GENE 51 55047 - 56399 1021 450 aa, chain + ## HITS:1 COG:Cgl2001 KEGG:ns NR:ns ## COG: Cgl2001 COG0336 # Protein_GI_number: 19553251 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Corynebacterium glutamicum # 1 257 15 289 292 228 46.0 2e-59 MRFDLISIFPDYFAPLRLSLMGKAEDAGLVHLQAHDLREWATGKHRSVDDTPYGGGAGMV MRADVWARALDEVLAMPLAERDGDGIQASPRRVLAIPTPSGTPLTQARVEDLARANQIIV ACGRYEGIDARVAEYYRGAGVEVVEFSIGDYVLNGGEVAAMVLTEAVARLLEGFMGNPGS LVEESHSGAGLLEYPAFTKPREFRSLEIPEVLLGGHHAAIERWRRDRAIEKTARVRPDLA LSLDASSLTREDRAMLARCGVAYPRAGGAERLDVRQAELEDVVAVSELAARTFPDACPEK LSEEAIAEYIATQLSADVFDALISDPEHHRLFVAEVWGGLVGYVLTHVGPDALPSDMVRP GRVEEGSAYLSKCYVDEAWRGSGVADALIERAIADARDLGHAAVVLGTNRGNKEAQAFYK RHGFRKRSSRTFDVGGVRNYDVVMVRDLTA >gi|292821200|gb|ACYT02000021.1| GENE 52 56572 - 56928 473 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229821019|ref|YP_002882545.1| ribosomal protein L19 [Beutenbergia cavernae DSM 12333] # 1 113 1 113 118 186 83 3e-46 MQKLDAVDAASLRDDIPSFRAGDTLKVHVKVIEGNRSRIQVFQGVVIARRGHGVSSTFTI RKVSFGVGVERTFPVHAPTIDHIEVVTKGDVRRAKLYYLRERHGKAAKIKEHRSGKSA >gi|292821200|gb|ACYT02000021.1| GENE 53 57135 - 57785 466 216 aa, chain + ## HITS:1 COG:Cgl1987 KEGG:ns NR:ns ## COG: Cgl1987 COG0681 # Protein_GI_number: 19553237 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Corynebacterium glutamicum # 2 198 35 251 262 123 36.0 2e-28 MWLREILMIIVVALVISSLLRAFIVQVFWIPSPSMHNTLVEDDRIAVSRIDALRSNVHRG DVVVFDDTLGWLGSSQATSPSVLRRLGEFTGFVPGGSEQTLVKRVIGVGGDRVSCTSANG KVSVNGVELDETYVPDGQVPCGERTFDVVVPEGHLWVMGDNRSNSADSRYHMGSGQSPYV PVSSVVGTVQAVIWPTSRWTTDIAHHEVFASVPDAS >gi|292821200|gb|ACYT02000021.1| GENE 54 57782 - 58453 393 223 aa, chain + ## HITS:1 COG:HI1059 KEGG:ns NR:ns ## COG: HI1059 COG0164 # Protein_GI_number: 16272990 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Haemophilus influenzae # 16 215 8 187 197 110 40.0 3e-24 MTTASRDLEVSLARRWGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTT RRREALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLD GSHDWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAEL EDPGYGWASNKGYGSAAHTRAIVELGVSDQHRRSWKMPTQATK >gi|292821200|gb|ACYT02000021.1| GENE 55 58508 - 58807 320 99 aa, chain + ## HITS:1 COG:no KEGG:Cfla_1477 NR:ns ## KEGG: Cfla_1477 # Name: not_defined # Def: protein of unknown function DUF2469 # Organism: C.flavigena # Pathway: not_defined # 2 98 3 99 107 139 69.0 2e-32 MSEEIEGYENNLELELFKEYRDVIGLFKYVVETERRFYLCNHVDVQARPVGGDVFFELTL SDAWVWDIYRSSRFVRSVRVITYKDVNVEELSKPELDIP >gi|292821200|gb|ACYT02000021.1| GENE 56 58935 - 59375 130 146 aa, chain + ## HITS:1 COG:Rv2898c KEGG:ns NR:ns ## COG: Rv2898c COG0792 # Protein_GI_number: 15610035 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Mycobacterium tuberculosis H37Rv # 9 114 9 110 128 60 43.0 7e-10 MGCSIRPDRRAIGAAGEYTARLALEEEGLRLLDTNWRDGRRGELDIIARDETDPSRSWTV IVEVRTRVGRRKGSALASVDHRKVARLRALTGAWCRAHGHLASRVRIDVVAITVDARTLE SWPAPMDEAVDLRALGAQVVWLRGVQ >gi|292821200|gb|ACYT02000021.1| GENE 57 59405 - 60919 383 504 aa, chain + ## HITS:1 COG:Rv2897c KEGG:ns NR:ns ## COG: Rv2897c COG0606 # Protein_GI_number: 15610034 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Mycobacterium tuberculosis H37Rv # 1 497 9 497 503 355 44.0 9e-98 MSIVGIEGHLVDVETYAGSGLVAFTLVGLLDTSVREARDRVRAAFESCGLDVLDQRITVN LSPAGIPKSGSAFDLSIAASIALATGLVSPVAFEDAVLVGELALDGSIQPVRGVLPAVLA ARSRGVRRVIVPSGCGQEARLVSGIEVLDFAHLADLIAWAGGEAVKAPFHGRMGVRREGY SDADPTLADMADVRGQPEAIAAMEVAAAGGHHVFLLGEPGSGKTMLASRLPTILPDLDAD TALVTTSLHSVAGLLPSSISLMTRPPFQAPHHSVTMPALIGGGTRTLVPGAASLAHGGIL FLDEAAEFAPSVLDSLREPLESGVIHVHRSGVQARYPAAFQLVMASNPCPCGGGYGGRRC TCSSMNRRRYLARLSGPLLDRMDIRIDVHTPSRADLASTQTRDSASIRGRVIEARLRART RLKGTPWTMNAQLPGAWLRHHSGIDASLIHQLDRLVDSGHSSMRGIDRMLRLAWTLADLE AVPRPTFDHIVAAQQLRNGADHYE >gi|292821200|gb|ACYT02000021.1| GENE 58 60999 - 61286 72 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRLRSAGQVAEEPQSHWLLLPQARKVLWPAWIAGCHESAARTSDACQLTVDVDREGALP PPIPLRVPVNPRVTGKRQRRCRPSPDQPRARISIP >gi|292821200|gb|ACYT02000021.1| GENE 59 61236 - 62072 480 278 aa, chain + ## HITS:1 COG:Rv2896c KEGG:ns NR:ns ## COG: Rv2896c COG0758 # Protein_GI_number: 15610033 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Mycobacterium tuberculosis H37Rv # 3 270 108 369 389 130 41.0 2e-30 MGLWFLGDLPGAPQADHHLSIVGARASTGAGNRCARNMAAFVAAAGVTVVSGGAIGIDIE AHRGALSARGRTICILAGGVCNPYPACHGGDFRTVIDGGGALISEVAPTARPAKWRFLTR NRLIAAWSGATVVVEAGARSGALATARRAMEYGRELGAVPGAVDAPMSVGCLELARNGAT IIRDGRDALELVRPVSVDAAQPLFGMPVDDDHGVDALEPTQRRVWEALPRSAPASVEAIC VAAALSREEVNYALMELSVAGLVAGSTRGWTRTGGGRP >gi|292821200|gb|ACYT02000021.1| GENE 60 62082 - 62993 497 303 aa, chain + ## HITS:1 COG:MT2962 KEGG:ns NR:ns ## COG: MT2962 COG0582 # Protein_GI_number: 15842437 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mycobacterium tuberculosis CDC1551 # 7 303 23 315 315 245 52.0 1e-64 MTRNVGERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRS WLARTLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESD ARVLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKG NKERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAAR AGVHDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAH PRA >gi|292821200|gb|ACYT02000021.1| GENE 61 63060 - 63611 233 183 aa, chain - ## HITS:1 COG:Cgl1980 KEGG:ns NR:ns ## COG: Cgl1980 COG0739 # Protein_GI_number: 19553230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Corynebacterium glutamicum # 58 174 44 158 164 72 42.0 4e-13 MSPHADVMTSVIPNRGRLRAATLIATFVSTLLLVATTPGVATPHRERWQWPTGGPVAVVE GFAPPAHDWLPGRRGVTLQYPAPSPVYACASGTVTVAGPIAGRGVISIRHEVGGRVVWST YLPVTPSVAVGDHVQKGSIIGLVEGDSPTLHWGAKTGRRTYIDPIRMTLGRPRLLPWDDA LAR >gi|292821200|gb|ACYT02000021.1| GENE 62 63998 - 64828 1115 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239928672|ref|ZP_04685625.1| 30S ribosomal protein S2 [Streptomyces ghanaensis ATCC 14672] # 1 270 1 271 293 434 81 1e-121 MAVVTMRQLLESGVHFGHQTRRWNPKMKRFILTERNGIYIIDLQQTIADIDIAFDFVKQT VAHGGTLLFVGTKKQAQEAVAEQAQRVGMPYVNHRWLGGMLTNFSTVATRLQRLKELEQI DFDDVASSGHTKKELLMMRREKDKLSRTLGGIRDMTKVPSAVWIVDPKKEHLAVSEARKL RIPIVAILDTNADPDEVDYRIPGNDDAIRAVALLTRVIADAVAEGLIARSDVRKGKGEEA AAEPLAEWERELLEGEVKADEAAAAEVAEESTTKQD >gi|292821200|gb|ACYT02000021.1| GENE 63 64854 - 65681 470 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 274 1 261 283 185 38 6e-46 MANFTAADVKALREQTGAGMMDVKKALTEADGDAEKALEIIRLKGLKSLSKREGRQASAG LLAAQTDGTVGVLVEVNSETDFVAKNQKFIDFSNEVLAAAVASGAADLDALFAAPMGEGT VKDRLDAFAAIIGEKLQVGRIVRVEGENVDLYLHQTNPDLPPQVGVFVVTDAAGKSVAHD IAMHVAAYMPAYLDRDSVPADVLDKERATLEKITLEEGKPANIVPKIVEGRLNAFYKDNC LVDQAFARDPSKSVAQVLKEAGATVTNFVRVHVGA >gi|292821200|gb|ACYT02000021.1| GENE 64 65812 - 66522 780 236 aa, chain + ## HITS:1 COG:MT2951 KEGG:ns NR:ns ## COG: MT2951 COG0528 # Protein_GI_number: 15842425 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 1 235 39 272 273 284 62.0 1e-76 MSTNRRVLLKLSGEAFGGGSIGLDPKVVRNIAEQVATAVREGVQVAIVVGGGNFFRGAQL AREGLERSRADYMGMLGTVMNALALQDFIDQSGVPARVQTAITMAQVAEPYLPLRAIRHL EKGRVVVFGAGAGLPYFSTDTVSAQRALEIHCDELLVAKNGVDGVYDDDPNKNPDAHRFD TLTYSEALRRDLKVIDGSALALCRDNGLTTRIFGMGGDGAVTRALMGDEIGTLVTA >gi|292821200|gb|ACYT02000021.1| GENE 65 66561 - 67118 728 185 aa, chain + ## HITS:1 COG:ML1590 KEGG:ns NR:ns ## COG: ML1590 COG0233 # Protein_GI_number: 15827834 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Mycobacterium leprae # 1 185 1 185 185 184 55.0 1e-46 MIDDILLEAEEKMDKAVEAASHEFSNIRTGRATSSMFEQLLVDYYGAPTPMQQLASFQIP EARTVLISPFDRTATQEIIRTLRESDLGVNPTDDGNVVRVVLPALTEERRKEYVKQAKSK AEDGRVSVRGVRRKAKDQLDRLKKDGEASEDDVERAEKQLDGLTKAHTEQIDKMLATKES ELLTI >gi|292821200|gb|ACYT02000021.1| GENE 66 67118 - 68029 981 303 aa, chain + ## HITS:1 COG:MT2948 KEGG:ns NR:ns ## COG: MT2948 COG0575 # Protein_GI_number: 15842422 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 22 287 57 342 349 155 37.0 8e-38 MASTDRSLLARVFSPGPTRDNHPADGATGKAGRNLPQAITTAVVLIAAVAVPLFTSLPAF VGVIAFVCLVGIWELAGAFARMGITLTVTPLYVGAIGMVTCAWWLGTEGMLFALYITVFV CAAWRLLDRRQQSRMSDVVSSTFAAVYVPFLASFVVLMMAAWQNAWVFVVFELMVIANDT GGWAAGVMFGKHPMAPALSPKKSWEGFAGSALTAIAVGVVGLWLLGASWWWGVVAGISIA FVGTMGDLTESLIKREAGLKDMSQILPGHGGVLDRVDALLMSAPVAYFSFAWALPGISWE SSH >gi|292821200|gb|ACYT02000021.1| GENE 67 68026 - 69306 920 426 aa, chain + ## HITS:1 COG:Cgl1973 KEGG:ns NR:ns ## COG: Cgl1973 COG0820 # Protein_GI_number: 19553223 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Corynebacterium glutamicum # 48 411 2 361 366 422 58.0 1e-118 MSQSTKGPRGAQARTPNTLGVSDLQRRSPRREVRPTDQPPEGATHKDAKPVLSFTAKRRG KAPSHLADLDAVARKQVLKDLGLPAFRADQLSRHYFTHFEADPANMSDIPAGMHEAVSDA LLPKLVTKVVSLEADGGRTIKDLWRLYDGAQVESVLMRYPQRTTLCVSSQAGCGMACPFC ATGQMGLTRNLSTAEIVDQVREAQASCRDGKLAGGPTKLSNVVFMGMGEPLANYKTVVAA LHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDELIPI NSRWKVGELLDAARGYFLATGRRVSIEYALIKNMNDQEWRAQLLADELNKRGHGWVHVNP IPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGACGQLATAVADGKRP VGEVRA >gi|292821200|gb|ACYT02000021.1| GENE 68 69339 - 69707 313 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189851|ref|ZP_06608565.1| ## NR: gi|293189851|ref|ZP_06608565.1| putative secreted protein [Actinomyces odontolyticus F0309] # 1 122 1 122 122 202 100.0 6e-51 MGYDVSEVLTFLADVERTLTGEEMDPERVVTAQKALDLEFSTKLRGFNDEEVDAEIDRLI DMLRHAERRRVACRANSVGSDVHAATLPATEPTTVSSEYADFGTPEAVEQILRSMTQEKE QS >gi|292821200|gb|ACYT02000021.1| GENE 69 69704 - 70252 561 182 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11343 NR:ns ## KEGG: HMPREF0573_11343 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 2 182 13 194 194 183 57.0 2e-45 MTEFPRVGLFSKGYDCAQVDAFFEDARRAYEGGVPPEQFSSEQVRLATFELKNRGYNIDA VDAAMNRLEAAFVKRDRADSVAAEGEAAWYDRVADRATTLYPRLQRPRGERFAHPTSGRG YSCEEVDDLLDRIVAYFDEAGELTADEIRLSTFRPKRGKKAYMEGPVDAYLGRAVEILLA VD >gi|292821200|gb|ACYT02000021.1| GENE 70 70252 - 71523 1045 423 aa, chain + ## HITS:1 COG:Rv2870c KEGG:ns NR:ns ## COG: Rv2870c COG0743 # Protein_GI_number: 15610007 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Mycobacterium tuberculosis H37Rv # 14 415 38 409 436 298 49.0 1e-80 MPVSVEEHTSTIPVVLLGSTGSIGTQAREVIEANRGRFDVLGLSAGGASITELAVQIVAL NPAYVGVARDVREELSAAVESMGGTCPEVFVGENASVEVVCASVERAAQLYPRATPVVLN GITGGVGLSSTLAALKCGARLALANKESLVVGGALVKNAMRFPGQIVPVDSEHSAIAQAL ASGVHERGLTSSLVSGRSEVADLVLTASGGPFRGRTRDQLRGVRAEQALAHPTWQMGPVV TINSSTLINKGLELIEAHLLFDVAPEHIIATVHPQSIVHSMVTWYDGATTLQASPPDMRL PIALGLTWPERLRDVEKPLTWASASEWTFEPVDNETFPAINLARFAVAASATHPAVLNAA NEVLVDAFIAGEVPWLAIVDTVASVVHEHEGVADPSLDDIVAAQRWADQRARELVRVGQW KDM >gi|292821200|gb|ACYT02000021.1| GENE 71 71526 - 72767 1036 413 aa, chain + ## HITS:1 COG:Cgl1968 KEGG:ns NR:ns ## COG: Cgl1968 COG0750 # Protein_GI_number: 19553218 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Corynebacterium glutamicum # 4 412 5 402 404 179 33.0 6e-45 MGSIVGIVVVVIGILASVALHEVGHMLPAKKFGVLVPDYAVGFGPALWKKKIGDTTYALR AILLGGYVKIVGMYAPARPGTRLVGRGGKPTLAQEAREASAVEIPDGQEHRAFYRLSAPK KIAVMLGGPLMNLLICIVLSAVTMIGIGAPTASRTIADVPATIMSASGEVASPAYEAGVR PGDTVVAWNGQPVATFAELQHAVGATQEGESAVLTVERDGSTVDLSVSPVTGAQGARLVG VTAGYEYVSASPADVAAANWQMFTGTTAVVTRLPQAVWQVGRSVFTDEKRDSSGVVSVVG VGRLAGEVTGDSQALGLRDTRQVVAVLLSLLASLNMALFVFNLIPLPPLDGGHILGAIYE GVRRTVARVRGAEDPGPADTARLVPVTWVVGGLLVAMSVILIVADIVKPVSLG >gi|292821200|gb|ACYT02000021.1| GENE 72 72847 - 74052 1444 401 aa, chain + ## HITS:1 COG:MT2936 KEGG:ns NR:ns ## COG: MT2936 COG0821 # Protein_GI_number: 15842410 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Mycobacterium tuberculosis CDC1551 # 10 389 3 383 387 505 69.0 1e-143 MRDNDTVSEINLGMPEVAASPFPRKQTRRIMVGDVPVGGGARVSVQSMTTTKTHDIGATL QQIAELTAAGCDIVRVACPTDKDADALPIIARQSRIPVIADIHFKPKYVFQAIEAGCGAV RVNPGNIRKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIWE ASLFEENDFHDFKISVKHHDVLTMIQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAF SVLLAEGIGDTIRVSLSAPPVEEIKVGTKMLEFMGLREKTLEIVSCPSCGRAQVDVWTLA EDVTEGLKDLTVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFIRGEVVETVPEDQI VETLIRRANALAEELGLEPGSGSVEVGPITAPDVKLPGIDF >gi|292821200|gb|ACYT02000021.1| GENE 73 74074 - 74577 523 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509147|ref|ZP_02044789.1| ## NR: gi|154509147|ref|ZP_02044789.1| hypothetical protein ACTODO_01668 [Actinomyces odontolyticus ATCC 17982] # 1 167 1 167 167 290 100.0 2e-77 MRIRTLAALSLVAGACAVAATGFPRRIGLTASQADVSLPGDLILPGANVVVDRGIAIDAP ASVVWDVLGHVFEPEDESTIIDIEDEDHILMRVAPPAAPEGAEASGTCVIALLQLSPSRT LLHIRERHEAQGRDRVLAWAGVAAESLSSLSMLRDLRDACVGGLVDA >gi|292821200|gb|ACYT02000021.1| GENE 74 74686 - 75099 443 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189857|ref|ZP_06608571.1| ## NR: gi|293189857|ref|ZP_06608571.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 137 10 146 146 207 99.0 2e-52 MSNSTAVIAMVGLVIASVWAWAWLGFGASARRMSVRLEIGGGSAAGEMSALVWPLMPFLS LLWFLTGDLMAREASGFATAGPCMLIALVLAAMVGVAVRALYLGGLPAWAYPGWMARRYY ASHPGARERELGARAVI >gi|292821200|gb|ACYT02000021.1| GENE 75 75180 - 76988 2667 602 aa, chain + ## HITS:1 COG:Cgl1948 KEGG:ns NR:ns ## COG: Cgl1948 COG0442 # Protein_GI_number: 19553198 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 598 1 586 588 667 59.0 0 MLRNLSTFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVR EEMDAMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLV KDMYSSYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAER DTYERIFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEAVTTP VPEAQDASGVPAPLEVPTPDAPTIESLVDLLNDQYPREDRPWTAADTLKNVVVTLTHPDG EHELLVVGVPGDRDVDMKRLEAAVAPAEVEMASDSDFVPHPELVRGYIGPTVLGPNSPKR VVDEEGNASGSVRYLVDPRVVEGTAWVTGANAEQRHVLNLVMGRDFAADGTIEAAEVREG DLAPDGSGPLHLERGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMGSYGIGVTRVMA ALAEANCDDKGLSWPAQIAPFDVHVLATGKGDEVFETAQSLGEELDAAGLDVLVDDRRKV SAGVKFKDYELVGVPFGLVVGRSLADSEVEIRVRATGETIVLPVEEAVARLRELHAAALK GE >gi|292821200|gb|ACYT02000021.1| GENE 76 76990 - 77481 682 163 aa, chain + ## HITS:1 COG:Cgl1563 KEGG:ns NR:ns ## COG: Cgl1563 COG0242 # Protein_GI_number: 19552813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Corynebacterium glutamicum # 1 163 1 166 169 122 40.0 4e-28 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS WNIDGEIGYVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDAKKVVV EGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRNAGF >gi|292821200|gb|ACYT02000021.1| GENE 77 77652 - 78155 442 167 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1800 NR:ns ## KEGG: Bcav_1800 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 1 167 1 166 166 219 68.0 4e-56 MRGSYTRGVLFVHSTPPALCPHIEWALGTALGQEVHLQWSDQEAAPGMVRCEFSWVGPIG SGARLASALRGWEHLRYEVTEEATASSDGGRWCHTPSLGIFHSQMDTIGNVVVPEDRIRA ALESATTYEELREGLDLALGQAWDDELESFRHAGAGAPVRWLNNRVG >gi|292821200|gb|ACYT02000021.1| GENE 78 78155 - 78514 365 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293189861|ref|ZP_06608575.1| ## NR: gi|293189861|ref|ZP_06608575.1| putative acyl carrier protein [Actinomyces odontolyticus F0309] # 1 119 1 119 119 140 100.0 2e-32 MGSIADLLGDQLRAGLAQLVDPDASDAAPASSENAAETAQDRAREAAMEAVLDEADLDPA DARGELTLRGDLDMDDVSLYAVVARVEREAKVALNDSQIEQRVTLADLLDAVSDAASNH >gi|292821200|gb|ACYT02000021.1| GENE 79 78650 - 80062 1869 470 aa, chain + ## HITS:1 COG:YPO0348 KEGG:ns NR:ns ## COG: YPO0348 COG1027 # Protein_GI_number: 16120683 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Yersinia pestis # 3 464 6 467 478 596 63.0 1e-170 MTRTEEDLLGTREVPKDAYWGIHTLRAIENYQISGRTINEAPELIRAFAQVKKACALANM QLKAMKPAKAEAIIAACDEIIENGRCMDQFPVDQFQGGAGTSVNMNANEVIANLALEILG EEKGRYDIINPNDHVNRSQSTNDAYPTAFRIALWRKVNRLRKAIDELADSFDEKGAEFRH ILTMGRTQLQDAVPMSLGSEFSAFAHTLREEDERLVNNAELLLETNLGATAIGTGLNTPD GYQQVVVRHLRRITGARVVGSPNLLEATSDTGAYVSMHATIKRSAVKLSKVCNDLRLLAS GPRAGLNEINLPKMAAGSSIMPAKVNPVIPEVVNQVCFKVIGNDQTVTMAAEAGQLQLNV MEPVIAQALIESINLLVNACDTLRERCITGITANAEVCRGYVENSIGIVTYFNDVIGHHL GDVVGKRAAAEGKTVREVIHDMELLSEEEVERILSPDNLANPKYAGTEED >gi|292821200|gb|ACYT02000021.1| GENE 80 80134 - 80703 789 189 aa, chain - ## HITS:1 COG:lin1042 KEGG:ns NR:ns ## COG: lin1042 COG1853 # Protein_GI_number: 16800111 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Listeria innocua # 1 177 1 180 183 80 28.0 2e-15 MHVPYETEKFYYGFPVYILAYPDEAVGVGITTGSSSYSLGQMVMIGCDSTTHAARAIKRS GICSLNLFGAEAMGLFEYAGTVSGGHKLRDAHVPSSDHDGIPVLDGSQMSLLCRVLEATD DGIYTHFRCAITQRLVDSALIDVRGRFRYEDLRTVEYVGDSRRRIYRYFSDRVERFGTFV RSFKESLLP >gi|292821200|gb|ACYT02000021.1| GENE 81 80854 - 83598 3790 914 aa, chain - ## HITS:1 COG:Cgl2195 KEGG:ns NR:ns ## COG: Cgl2195 COG2609 # Protein_GI_number: 19553445 # Func_class: C Energy production and conversion # Function: Pyruvate dehydrogenase complex, dehydrogenase (E1) component # Organism: Corynebacterium glutamicum # 10 900 20 907 922 1159 63.0 0 MSQLHESHPVVNGLIPQVPDNDPQETAEWVESLSGLINEKGGPRARYILLHMLDEARRNG VQLPQEYTTPYVNTIPVDQEPYFPGDEAMEREYRRWIRWNAAVQVTRAQRPGVKVGGHIS SYASVATLYEVGLNHFFRGKDHPGGGDHVFFQGHASPGPYARAFLEGRLSEKEMDGFRQQ VSTEHGLPSYPHPRQLEHFWEFPTVSLGLGPAEAIYQAWFDRYLHMNGIKDTSQQHTWAF IGDGEMDEPESRGMLQLAAQQRLDNLTFVINCNLQRLDGPVRGNGKIIQELEAFFKGAGW NVIKVIWGRGWDQLLAADKDDALVHVMNETLDGDYQTFRANDGAYVREHFFGRDPRTKEM VKNWTDEQLWELKRGGHDYRKVYAAYKAAMDHTGQPTVILAHTIKGYALGSHFAGRNSTH QMKKLTLEDAKQLRDRLQIPITDEELERDPYMPPYYMPPGDHPALQYMKERREILGGWVP ERRADRQPKLPALPTRPFEALSKGSGKLEVATTMALVRLIKDLLKDKEVGKYFVPIIPDE ARTFGLDAIFPSAKIFNTTGQSYTPVDADMMLSYRESEQGRILHTGITEAGSSAAFQVVG TAYATHDLPMVPIYIFYSMFGFQRTGDQFWAAGDQLTKGFIIGATAGRTTLAGEGLQHMD GHSQVLAATNHAFVSYDPAYAYEIRHIMADGLQRMYGDADGRDPNVMYYITVYNEPIHQP AEPENVDVEGIIKGIYNVDEHQNFGGPKAQLLASGVGVPWAREARELLARDWGVDAAVWS VTSWNELRRDGLDAEEHNFLHPSEPRRTPYVSTKLAGREGPFVASSDFDRMLPDQIRQWI PGDYHVLGADGFGFSDTRRAARRWYHIDAESMVVRTLAALADKGQVDPSVVQQAIEKYDL FNYSIQGNDHAGEE >gi|292821200|gb|ACYT02000021.1| GENE 82 83922 - 84323 420 133 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11425 NR:ns ## KEGG: HMPREF0573_11425 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 5 132 24 151 151 138 57.0 7e-32 MAVRLGFASDAIVQEFYVDDDVDQAVRAAIEEETGQPIVDVDYADVVDGAIVWWRADDAE EEDLADVLVDAMSNLDDGGLIWVLIPKPGRPNSVRVGDVEEAAKIAGLHATTSTALGDNW AGVRLTARPRSRR >gi|292821200|gb|ACYT02000021.1| GENE 83 84573 - 85112 729 179 aa, chain - ## HITS:1 COG:MT1902 KEGG:ns NR:ns ## COG: MT1902 COG1252 # Protein_GI_number: 15841322 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Mycobacterium tuberculosis CDC1551 # 2 165 289 461 463 175 52.0 5e-44 ALGEATGAEVDRAGRVTVNKDLTLPGHPEIFVLGDMMAFPGVPGVAQGAIQSARFAADTI AARLAGRKPKATEFSYFDKGSMATIARYKAVVKMGNTKLTGFVAWVAWCFLHLLYIVGFK SQVGTLVSWFFSFLSGARPQRTTTNQQMVGRLALEQLGAGASGKLVVGEDVVEEHEEQD Prediction of potential genes in microbial genomes Time: Tue May 17 06:20:10 2011 Seq name: gi|292821178|gb|ACYT02000022.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.29, whole genome shotgun sequence Length of sequence - 22217 bp Number of predicted genes - 20, with homology - 20 Number of transcription units - 9, operones - 7 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 834 1281 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 856 - 915 3.6 2 1 Op 2 . - CDS 923 - 2335 962 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 3 1 Op 3 13/0.000 - CDS 2404 - 3468 1437 ## COG0320 Lipoate synthase 4 1 Op 4 . - CDS 3465 - 4220 673 ## COG0321 Lipoate-protein ligase B 5 2 Op 1 . + CDS 4203 - 5105 651 ## COG0327 Uncharacterized conserved protein 6 2 Op 2 . + CDS 5102 - 5845 864 ## Kfla_2594 protein of unknown function DUF164 + Term 5876 - 5906 0.3 7 3 Op 1 . - CDS 5849 - 7186 1342 ## COG3669 Alpha-L-fucosidase 8 3 Op 2 . - CDS 7266 - 8078 539 ## COG3022 Uncharacterized protein conserved in bacteria - Prom 8235 - 8294 1.6 - Term 8487 - 8522 8.1 9 4 Tu 1 . - CDS 8547 - 9299 1122 ## COG1940 Transcriptional regulator/sugar kinase - Prom 9354 - 9413 1.7 - Term 9375 - 9426 5.8 10 5 Op 1 . - CDS 9439 - 10323 1116 ## COG0024 Methionine aminopeptidase 11 5 Op 2 . - CDS 10351 - 11211 775 ## COG0413 Ketopantoate hydroxymethyltransferase 12 6 Op 1 40/0.000 + CDS 11380 - 12465 1333 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 13 6 Op 2 . + CDS 12467 - 15115 2661 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 14 6 Op 3 . + CDS 15218 - 15706 526 ## COG4635 Flavodoxin + Term 15718 - 15763 14.2 15 7 Op 1 4/0.000 + CDS 15786 - 16301 332 ## COG1438 Arginine repressor 16 7 Op 2 . + CDS 16364 - 17584 1668 ## COG0137 Argininosuccinate synthase + Term 17634 - 17681 14.5 17 8 Op 1 . + CDS 17684 - 19039 1199 ## CMM_1025 membrane protein, putative polysaccharide polymerase 18 8 Op 2 . + CDS 19082 - 20509 1285 ## COG0165 Argininosuccinate lyase 19 8 Op 3 . + CDS 20580 - 21842 661 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 21856 - 21897 6.4 20 9 Tu 1 . + CDS 21955 - 22188 111 ## gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 Predicted protein(s) >gi|292821178|gb|ACYT02000022.1| GENE 1 3 - 834 1281 277 aa, chain - ## HITS:1 COG:MT0403 KEGG:ns NR:ns ## COG: MT0403 COG1252 # Protein_GI_number: 15839774 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Mycobacterium tuberculosis CDC1551 # 3 276 14 287 470 341 64.0 1e-93 MSRHRIVIIGSGFAGLTAARRLKNANADITILARTSHHLFQPLLYQVATGILSEGDIAPT TREILRSQRNVTVLQALVEEIDVEARVVKWRNHNKHEQTEYDTLIVAAGAGQSYFGNDHF AVFAPGMKTIDDALELRARIFGAFELAEIETDPTAVDKLLTFVVVGAGPTGVEMAGQIRE LASHTLKGEFRNIDPTKARVILVDGAEHPLPPFGEELGIKTEEALAKLGVEMKMNAFVTG VDSEGVTLKYKSGEEERIESVCKVWAAGVAASPLGRA >gi|292821178|gb|ACYT02000022.1| GENE 2 923 - 2335 962 470 aa, chain - ## HITS:1 COG:Cgl0284 KEGG:ns NR:ns ## COG: Cgl0284 COG0318 # Protein_GI_number: 19551534 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 6 458 28 498 512 154 27.0 5e-37 MDAATGEEWTVREAANTVARLAAAFDTAGIGEGTRIAVIGANSPWHYIVHVAASWLRAVT VPLSPRMPSGALASMCEQVGVSWVFLDEACAPHSPALTDVGAQVASLMDLAVWVDHTAPI ETAPARCGTELAAILFTSGSTGIPRPVELTHEVMWWGSTNFREGFDYAPTSSVVGVCAPA SHIGGFNGTSMDVWTHGGTLVTLGFPGSFDARGVIDGIEHYGITMMFAVPAIVRAILDEH ERGDGDLSSWVRPLVGGDAMTADLAEAMRAVGLSPIHVWGMTETSGAGTVATPDSSAPAG SLGVPFPYVDLRVMASDEREADVDEMGEIWVRGPGVVSGEEWLRTGDLATRDAGGWLHMV GRAHRMINTAGELVAPPTVERALRTLDEVSDALVVGLPDERWGQIVAALIVPSAQGRAQA SSMSAEALSAALSDALAPWEKVRRVLVVDALPTTTTGKPDPVAAARLFDA >gi|292821178|gb|ACYT02000022.1| GENE 3 2404 - 3468 1437 354 aa, chain - ## HITS:1 COG:Cgl2160 KEGG:ns NR:ns ## COG: Cgl2160 COG0320 # Protein_GI_number: 19553410 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Corynebacterium glutamicum # 7 335 5 335 348 442 64.0 1e-124 MSTLPDPEGRKLLRIEVRNSQTPIEKKPEWIRTTAKAGENYQDMRSLSHAKGLHTVCAEA GCPNIYECWQDREATFLLGGALCTRRCDFCDIATGRPTEYDKDEPRRIAESVRDLDLRYV TITGVTRDDLPDGAAWLYAETCRLIHELNPGTGVELLVDDFRGQAESIDMVIEAGPQVFA HNLETVPRIFKKIRPAFNYDRSLAMIKRAHDGGMVTKSNLILGMGETREEISAAMRDLHA SGCDLLTLTQYLRPSPLHHPIDRWVHPEEFVELAAEAEELGFAGVMAGPLVRSSYRAGLL WAKGMRARGFEIPEQLRHIENSGSTLQEAGSVLARLKERSERHAAMAATAASAS >gi|292821178|gb|ACYT02000022.1| GENE 4 3465 - 4220 673 251 aa, chain - ## HITS:1 COG:ML0859 KEGG:ns NR:ns ## COG: ML0859 COG0321 # Protein_GI_number: 15827384 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Mycobacterium leprae # 36 246 17 234 235 156 43.0 4e-38 MRRRLHRSSIPDPPLARDHARDYDHNVQILSLLDQGLVEYTQVDALQRSLHEEVLAGGED TLIVSQFTPTWTAGRHTKPEDIPSTTVPVIRTDRAGSATWHGPGQVVVYPVVRLREPVDL VQWIRAVEASVIDTVWEVWDLPVHRVEGRAGVWLTEEGRRDRKICAIGLKVARGATLHGI ALNVDIDPAHAFEGIIPCGLTDADVTSLSWEGVHTTVSDAASELLPRMVEHISPCLATTP TSVSYTTRSTL >gi|292821178|gb|ACYT02000022.1| GENE 5 4203 - 5105 651 300 aa, chain + ## HITS:1 COG:Cgl2188_1 KEGG:ns NR:ns ## COG: Cgl2188_1 COG0327 # Protein_GI_number: 19553438 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 18 141 5 122 123 119 52.0 7e-27 MQSSSHQNMSGVCASTWTVGDVMALMESWYPAATAQSWDRVGLIVGDPAAHVRSILLALD PTAAIADQAVAGPSGDGQSFDMVITHHPLLLRGASFLPVTDPKGGVVTTLIRSGIALFNA HTNADVACDGVATALADLIGLRDTAPLEPCGTDAEGHDIGLGCVGTVDATTLGAFADHVA SVLPAGPSGLFVGGDENATVQRVAVLGGAGDSALEAARAAGVDVYLTADLRHHPASEHLE GGAPALLCGSHWATESPWLPVLARKIREAARGADVELRVEVSTIVTEPWTSHRVTQGELA >gi|292821178|gb|ACYT02000022.1| GENE 6 5102 - 5845 864 247 aa, chain + ## HITS:1 COG:no KEGG:Kfla_2594 NR:ns ## KEGG: Kfla_2594 # Name: not_defined # Def: protein of unknown function DUF164 # Organism: K.flavida # Pathway: not_defined # 26 242 31 248 252 94 30.0 3e-18 MKASHTDQLELLELQKLDQKESALLHKRDSHPAHATVREFAGRVADLQRAAITQSAVIAD TMREVTRIEDEIAKVTERRKRQQSRIDNNQVPLRDISAMEHEIAQMDRRLAKLEDDQVEA EERVEAARAAQDQMKAEAQAIVADIEALKAQFEDDVADSDDELRCVIAARRELADRLPAD LLEEYEDARRRNGALAVIEVRDGYGIGVAADLSPMELERIRLTPADELYLTEDTAQIVVR TAANTPR >gi|292821178|gb|ACYT02000022.1| GENE 7 5849 - 7186 1342 445 aa, chain - ## HITS:1 COG:SP2146 KEGG:ns NR:ns ## COG: SP2146 COG3669 # Protein_GI_number: 15901959 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Streptococcus pneumoniae TIGR4 # 12 432 11 437 559 243 36.0 6e-64 MINEDYLANIRPTHRQLQWQRMEMYAFIHFGMNTMTDREWGQGHEDPALFNPGSVDVDQW MRALVSAGMTGVILTCKHHDGFCLWPSAYTKHSVGSSPWKGGRGDLVREVSEAAARHGLK FGVYLSPWDMTEPTYGQGEAYNDFYINQLIELLTHYGPVFSVWLDGACGEGPNGKVQVYD WQRIYDTVRALAPEAVISVCGPDVRWCGNEAGSVRANEWSVVPASLREAERTAEKSQKAD DGEFSRQVASGDEDLGSREALADYCGPLAWYPAEVNTSTRKGWFHHDAEDSQVRSVDELF SIWKGSVGGNATFLLNVPPNRDGLLADADVEVLARLGEKITDFSSRRIEASRADEGDAVT LRFDAPHALSAIVLEEDIAQGQRIDEAVVTACVDGDGEQEIARVHCVGYRRIVTLEKPVT ATQVRVTVTKSRQGFYLADAYVIEA >gi|292821178|gb|ACYT02000022.1| GENE 8 7266 - 8078 539 270 aa, chain - ## HITS:1 COG:Cgl1949 KEGG:ns NR:ns ## COG: Cgl1949 COG3022 # Protein_GI_number: 19553199 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 248 1 244 245 89 31.0 7e-18 MLIWLPPSEGKNAPSQGPSLDLNALSRASLTTSRRTVCDTLTALGDGPVAAAVLKVGARI DLSVNTALDSAPCATASSLFTGVLYEAIEECAPSAWSGAGAAHVSIFSGLFGVLSPSDVI PDHRLAMGVSLPDLGVLSTWWAPRLDEALSPEASERIIVDGRSGPYRAACKAPWARVWEL RVERETDGKRSVISHDAKRWRGAITGLLLASDGYLAEETSAAEKALEEAAYSLSLGDAKG HEHRVTDVEYGAEKQTKNGGSTRTVTLVTH >gi|292821178|gb|ACYT02000022.1| GENE 9 8547 - 9299 1122 250 aa, chain - ## HITS:1 COG:Cgl1864 KEGG:ns NR:ns ## COG: Cgl1864 COG1940 # Protein_GI_number: 19553114 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Corynebacterium glutamicum # 1 247 1 246 250 236 47.0 4e-62 MAQVACGIDIGGSGVKGALVDLETGEYVGDQVRIPTPTPATPDAVAAVCREVIDQLDVKI GVPIGVTFPAPVFDGVIPYMANLDQSWVNVNVDELMERYLGRAVVALNDADAAGIAEVAY GAAKGRDGVIVFTTQGTGIGSAIIVNGTLLTNTELGHLEIDGTDAEKNASSGQKTLQGLN WEQWAQRLQRYYSHVEFLLNPDLFVVGGGVSENHEKFMPLLDLKTPMIPAKLLNTAGIVG AAYYAAQRSA >gi|292821178|gb|ACYT02000022.1| GENE 10 9439 - 10323 1116 294 aa, chain - ## HITS:1 COG:MT2929 KEGG:ns NR:ns ## COG: MT2929 COG0024 # Protein_GI_number: 15842403 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Mycobacterium tuberculosis CDC1551 # 15 292 7 283 285 345 59.0 6e-95 MEASALAHRAPLGTLKPGRVSPMRAVPEHIERPEYMFHDGPERVTASEIKSPETIAKIRE AGRIAAGAIEAVGAAIAPGVTTEELDRIGHEFIIAHDAYPSCLGYMGFPKSICTSINEVI CHGIPDDRPLEDGDIINIDITAYKDGVHGDTCAMFEVGAVDEESHLLIERTKNAMMRGIK AVGPGREINVIGRVIEAYAKRFDYGVVRDYTGHGVGEAFHSGLIIPHYDAAPAYDTVMEP GMVFTIEPMLTLGTIEWEQWDDDWTIVTADRSRTAQFEHTIVVTEDGAEILTLP >gi|292821178|gb|ACYT02000022.1| GENE 11 10351 - 11211 775 286 aa, chain - ## HITS:1 COG:Cgl0115 KEGG:ns NR:ns ## COG: Cgl0115 COG0413 # Protein_GI_number: 19551365 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Corynebacterium glutamicum # 23 279 6 264 269 241 52.0 2e-63 MSHITQPAGGAPASSQTPTLFSAQRVRIQHIERAKAEGIPLTMLTAYDALTAPILEAAGV DMLLVGDSLGNVILGHSSTLPVTLEDMERATAAVARSTSRAMIVADLPFGTYEDTAEHAF ASATRLMKAGAHAVKLEGGQSRAHIIAGLVSAGIPVCAHLGYTPQSENTLGGPRMQGRGA GADALRRDAEAVQKAGAFAVVFEMVPASIATELTQSLSIPTIGIGAGPNTDGQVLVWSDM AGYSDWTPSFVRKFGQLGPALREAASDYVKAVRERSFPGPDNYKND >gi|292821178|gb|ACYT02000022.1| GENE 12 11380 - 12465 1333 361 aa, chain + ## HITS:1 COG:Cgl1356 KEGG:ns NR:ns ## COG: Cgl1356 COG0016 # Protein_GI_number: 19552606 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Corynebacterium glutamicum # 11 358 6 345 345 422 58.0 1e-118 MAGNAPDLDPLDEAAVNAVREAGLADIEAADSLDALKAVRAALLGDQAPLVTANRTIGSL EPAQRGLAGKNLGQARKVLTEALEERKAVLAAEHEARMLVEESVDVTLPTTRRPAGARHP LETLMEEVADFFVAMGWDIAEGPEIEHEWFNFDSLNFDIDHPARQMQDTLYIDGRSVGAE TEDGAHLVMRTHTSPVQSHAMLSRGVPLYVACPGKVFRSDALDATHTPVFHQVEGLAIDK GLTMAHLKGVLDHFAKAMFGPEAKTRLRPSYFPFTEPSAEMDLWFPQKKGGPGWIEWGGC GMVNPNVLRANGVDPEVYSGFAFGMGIERTLMLRHGIADMHDIVEGDVRFSQQFGVNGRG N >gi|292821178|gb|ACYT02000022.1| GENE 13 12467 - 15115 2661 882 aa, chain + ## HITS:1 COG:Cgl1357_2 KEGG:ns NR:ns ## COG: Cgl1357_2 COG0072 # Protein_GI_number: 19552607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Corynebacterium glutamicum # 174 882 1 673 673 453 41.0 1e-127 MPMVPLSWLSDHVDVPEGTDAQALAAALVKVGLEEEEIHPARVTGPLVVGRVLTRVEETA SNGKIVNYCRVDVGEYNDAPGTGKEPSDLPSRGIICGAHNFDVDDLVVVSLPGAILPGDF QIAARKTYGHVSDGMICSARELGLGEDHDGIIVLPKYFPDREIPAVGTDIVTWLGLGEEV LEINVTPDRGYCFSMRGIAREYSHSTGASFRDPGLPGVIAAEPPTANSDGFPVVFSDDAP IRGRVGVDRFVARIVRGTNPNAPTPRWMVERLEAAGMRSVSLAVDITNYVMLDLGQPMHA YDLGALAAPIVVRRARAGETLVTLDEEKRELDPQDLLITDSPEGEGSRIIGIAGVMGGAY SEVGEGTTDVLFEAAHFDSVSVARSSRRHKLHSEAAKRFERGTDPQLPAVAAQRAVELLL EYGGGTVDAGVTDVDQRGKAVVISLPVGEVERLTGVAHAPERIAELLRTVGCVVEGPDNG AFTVTAPSWRPDLTLPADLVEEVARLDGYDNIPVVMPIAPAGHGLTVAQKARRLAAATLA DGGLVEVESYPFVSDTWDRQGIPADDPRREAVRLRNPMADDAPWLRTTVLDTLLDVAGRN VSRSNADVAIFEVAKVARPAGTVPADLPSAEERPSDEVIAALEAGIPAQPWHIGGVLTGQ AVPAGVLVNARAYDWADALEYVRRVASGLGVRVEVTRAWMDEVPAHKGAPMPAPATDPAA VAPFHPGRVARVFVRAGRDLVDVALAGELSPAACRAFGLPARSCAFEIDMDALISQMSEA PIQVKGVSTFPLAKEDIALVVPSDIPASRVEQIVRQGAGQLAESVTLFDIYEGDQVPEGH RSLAFALRLRAADHTLTAKESLQVREQVVAKAAKVLGASLRA >gi|292821178|gb|ACYT02000022.1| GENE 14 15218 - 15706 526 162 aa, chain + ## HITS:1 COG:MA2078 KEGG:ns NR:ns ## COG: MA2078 COG4635 # Protein_GI_number: 20090924 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism # Function: Flavodoxin # Organism: Methanosarcina acetivorans str.C2A # 3 160 11 177 183 83 30.0 2e-16 MHILVTASSKHGATDEVADAIAKRLEAAGFTVDRAAPADVTTVESCDAVVVGSAVYILQW MPEAHDFMERFKDDLRDKPVWAFSVGMNGVPNHSQQDSNRVGPLLTHVNCRELRTFPGRY KPELLSLRERSVARLAGVVEGDFRDWDAIDAWADDIAAQLGA >gi|292821178|gb|ACYT02000022.1| GENE 15 15786 - 16301 332 171 aa, chain + ## HITS:1 COG:MT1695 KEGG:ns NR:ns ## COG: MT1695 COG1438 # Protein_GI_number: 15841113 # Func_class: K Transcription # Function: Arginine repressor # Organism: Mycobacterium tuberculosis CDC1551 # 3 155 10 162 201 94 43.0 9e-20 MSATPAFPSTKSARHEMIRDLLASESIGSQEGLRARLAERGIDVTQTTLSRDLMDLRATK IRDTSGALIYTVPDHDGGHTHDAEAANVRLARWCQLLLVTSVKVGNQLVLRTQVGAANLL ASSIDAVRRDEIAGTIAGDDTILVICRSEEGAADVERSLLALAEPGALPEN >gi|292821178|gb|ACYT02000022.1| GENE 16 16364 - 17584 1668 406 aa, chain + ## HITS:1 COG:MT1696 KEGG:ns NR:ns ## COG: MT1696 COG0137 # Protein_GI_number: 15841114 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 5 399 3 398 398 575 68.0 1e-164 MSSKDRVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQGGEDLEVIRQRALDCGAVE AYVADARDEFAEEYCMPALKANALYEGKYPLVSALSRPVITKHLVKAAREFGASTVAHGC TGKGNDQVRFEVSITSMAPDMDCISPVRDLALTRDVAIDYAEKHNLPIETTKHNPFSIDQ NVWGRAIETGFLEDLWNAPTKDVYNYTDDPTYPPLPDEVVITFDKGIPVAIDGRPVTPLE AIQEMNRRAGAQGIGRIDMVEDRLVGIKSREIYEAPGAVALIEAHQALESVTLERMQRRY KRQLEQTWGELVYEAQWYSPLKKSMDAFIEHTQEYVSGDIRMVLHGGRATVNGRRSESSL YDFNLATYETGDTFDQSSSRGFIDIYGLQSKLAAARDVRFGVNMGY >gi|292821178|gb|ACYT02000022.1| GENE 17 17684 - 19039 1199 451 aa, chain + ## HITS:1 COG:no KEGG:CMM_1025 NR:ns ## KEGG: CMM_1025 # Name: wzy4 # Def: membrane protein, putative polysaccharide polymerase # Organism: C.michiganensis # Pathway: not_defined # 23 431 41 456 515 151 31.0 5e-35 MTYEASAVSDAVGSDRDDALRTRMMRYTVAAMFFVGFAGKGVRGIFGEIGSLVPMLILLV SFVVLFRTSGRSLLLRRFPTTTCLFVAWCALSCAWSVAPLQSAQYAVSSVALTLVSIGVA VALPLTELVGALILAFQWIIGSSFVLEALVAFCGHGPLAPPIMWGRGLLPASYYWVDGHL LQGGPIQGFPGNRNPLAFVALLLAVCLILRYMQTRAARLSTVLWLTACGVVMLLTQSATV ALSTVGCLVVIAGLVVQRRVPVHLRLRVVGMFAGIGVLTAIAAFFCRHMIADAFGRSPDM SGRSVIWHAVAPLVRQRPIGGWGWFIGWPTEMEPFASLVIRPDGTPTNQAHNVYVEAALT TGFVGAAMITVAIVWTLYRVVKVAVAHIDDNLWDVIPAVIIIAMFIQSFTESRLLFEGNW MLFVMIATWVKVRGEVPVVWPSAARQHLEYS >gi|292821178|gb|ACYT02000022.1| GENE 18 19082 - 20509 1285 475 aa, chain + ## HITS:1 COG:Cgl1368 KEGG:ns NR:ns ## COG: Cgl1368 COG0165 # Protein_GI_number: 19552618 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Corynebacterium glutamicum # 9 470 10 471 477 537 60.0 1e-152 MSKSETHVSLWGGRFSGGPSQALAALSVSTHFDFRLAHVDIAGSHAHADELHRVGLLSDQ ECADMHDALARLDADVASGAFVPAPDDEDVHTALERGLIERAGATLGGKLRAGRSRNDQI ATLIRVYLREEARHLAGRVLDIAQALIGQAMRVGDAVMPGRTHMQHAQPVLVAHHLLAHV WPLLRDVARLRDWDKRAAISPYGSGALAGNTLGMDPRRIAAALGFTDSVENSIDGTAARD VVAEFAFVCAQIGIDISRLSEEIVIWNTKEFGYVTLDDSYSTGSSIMPQKKNPDVAELAR GKAGRLIGDLTGLLAVLKGIPLAYDRDLQEDKEPVFDQIDTLDILCPAVAGMIDTMTIHL DRLEELAPQGFSLATDIAEWLVKQGVPFRDAHEISGACVRLAEARGVELADLTDEELAQA SSALTPEVRSVLTVEGSVGARRGRGGTAPERVREQIAEAEAGLADARKWAATALH >gi|292821178|gb|ACYT02000022.1| GENE 19 20580 - 21842 661 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 2 419 7 416 418 259 35 1e-68 MTDILDELQWRGLLAQHTDLEALREHLNAGPVTFYCGYDPTAPSLHHGHLVQLIVMRHLQ LAGHRPLALVGGATGQIGDPRQSGERQLQSTEVVKGWADRLHSQISKFLDFEGPAAATMV NNLDWTQEMSAIDMLRTIGKYFRVGTMLNKDIVARRIASDEGISYTEFSYQVLQANDFLE LYRRNGCTLETGGNDQWGNMVGGVDLIRKVEGVDTHVMTTPIITKADGTKFGKSEGGAIW LDPEMMTPYAFYQFWLQVADDDVVRFLKIFTFKSREEIEALAVEVAERPHQRAAQKALAA SVTELVHGADQLERVLAATDALWGGGDIRDLDEATLVAATADLPRASLTIGESTVADALV ALGFEKGKTAARRTISSGGASINNVKVEDPEAVLRDEDVVAGGLALIRKGRKNLAVLELS >gi|292821178|gb|ACYT02000022.1| GENE 20 21955 - 22188 111 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293188963|ref|ZP_06607697.1| ## NR: gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 [Actinomyces odontolyticus F0309] # 3 77 1 75 84 91 96.0 2e-17 MGVGRLFTCRRELVCGFVVVVHCSGGWVFGLVFWGVWVLFVNSIVCLFVFYACFLFLSVF GWDCWLALFGWLVFSGL Prediction of potential genes in microbial genomes Time: Tue May 17 06:20:36 2011 Seq name: gi|292821141|gb|ACYT02000023.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.3, whole genome shotgun sequence Length of sequence - 37751 bp Number of predicted genes - 35, with homology - 31 Number of transcription units - 22, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 1 - 1282 1598 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 2 1 Op 2 . - CDS 1336 - 1938 744 ## COG0193 Peptidyl-tRNA hydrolase 3 1 Op 3 . - CDS 1928 - 2791 1088 ## HMPREF0573_11764 hypothetical protein - Prom 2818 - 2877 3.1 4 2 Tu 1 . - CDS 2893 - 4140 1110 ## COG0153 Galactokinase 5 3 Tu 1 . + CDS 4273 - 4821 635 ## COG1514 2'-5' RNA ligase - Term 4892 - 4938 12.1 6 4 Tu 1 . - CDS 4953 - 5780 994 ## COG0708 Exonuclease III - Term 5808 - 5863 16.0 7 5 Op 1 2/0.000 - CDS 5910 - 6818 864 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 8 5 Op 2 . - CDS 6821 - 8104 1840 ## COG0112 Glycine/serine hydroxymethyltransferase 9 6 Tu 1 . - CDS 8280 - 8393 70 ## + Prom 8352 - 8411 1.6 10 7 Tu 1 . + CDS 8538 - 9233 970 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 9252 - 9307 18.9 11 8 Tu 1 . - CDS 9344 - 9523 116 ## - Term 9838 - 9871 -0.7 12 9 Op 1 . - CDS 10087 - 10866 800 ## cauri_0415 hypothetical protein 13 9 Op 2 . - CDS 10872 - 14342 4352 ## cauri_0414 hypothetical protein - Term 14532 - 14568 0.7 14 10 Tu 1 . - CDS 14569 - 18021 3920 ## cauri_0414 hypothetical protein - Prom 18057 - 18116 3.3 - Term 18038 - 18075 3.4 15 11 Tu 1 . - CDS 18138 - 19625 1797 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Prom 19604 - 19663 1.5 16 12 Tu 1 . + CDS 19685 - 20338 897 ## cauri_0412 putative secreted protein + Term 20365 - 20398 5.9 17 13 Op 1 . - CDS 20259 - 21722 1804 ## cauri_0411 hypothetical protein 18 13 Op 2 . - CDS 21773 - 23116 1467 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 19 13 Op 3 . - CDS 23113 - 24405 1597 ## cauri_0409 hypothetical protein 20 13 Op 4 . - CDS 24402 - 25310 905 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 21 13 Op 5 . - CDS 25303 - 26097 990 ## cauri_0407 choline/ethanolaminephosphotransferase (EC:2.7.8.2) 22 13 Op 6 . - CDS 26094 - 26591 527 ## COG0615 Cytidylyltransferase 23 14 Tu 1 . - CDS 26862 - 27782 1142 ## COG0788 Formyltetrahydrofolate hydrolase 24 15 Tu 1 . + CDS 28238 - 28747 277 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 25 16 Tu 1 . + CDS 28852 - 29217 211 ## + Term 29275 - 29310 3.2 - Term 28898 - 28941 3.0 26 17 Tu 1 . - CDS 29164 - 29337 83 ## - Term 29501 - 29560 -0.9 27 18 Tu 1 . - CDS 29613 - 30602 1589 ## COG0039 Malate/lactate dehydrogenases 28 19 Tu 1 . + CDS 30805 - 31836 953 ## COG1230 Co/Zn/Cd efflux system component - Term 31850 - 31901 19.8 29 20 Op 1 12/0.000 - CDS 31940 - 32236 372 ## COG2440 Ferredoxin-like protein 30 20 Op 2 . - CDS 32263 - 32700 652 ## COG0644 Dehydrogenases (flavoproteins) 31 20 Op 3 . - CDS 32682 - 32900 257 ## Arch_1365 major facilitator superfamily MFS_1 - Term 33394 - 33445 5.7 32 21 Tu 1 . - CDS 33646 - 34953 605 ## COG1232 Protoporphyrinogen oxidase 33 22 Op 1 . + CDS 35114 - 35965 1034 ## RER_46830 MerR family transcriptional regulator 34 22 Op 2 4/0.000 + CDS 35958 - 36872 983 ## COG1131 ABC-type multidrug transport system, ATPase component 35 22 Op 3 . + CDS 36869 - 37751 808 ## COG3559 Putative exporter of polyketide antibiotics Predicted protein(s) >gi|292821141|gb|ACYT02000023.1| GENE 1 1 - 1282 1598 427 aa, chain - ## HITS:1 COG:ML0252 KEGG:ns NR:ns ## COG: ML0252 COG1197 # Protein_GI_number: 15827046 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Mycobacterium leprae # 27 381 32 409 1224 238 44.0 2e-62 MLLTGLLPDITTDPAIETAIDSVEAGRSGTIVAPVGIRPPLLAAVASRAATPLVVLTATG RDAESLTNALASWIPGVAMLPAWETLPHERLSPQVDTMARRIAVLRRLVHPITGDDSAGP MSVLVVPIRAFLQPIISGLADLEPVRVRTGDILDLTETTNRLAELGYERVDMVEGRGQMS VRGGILDVFPPQEPHPLRVELWGDEVDDIRAFSVSDQRTLGEAADGLWAVPCRELLLTRA VRARAREAADRLPGAAEMLSLAAEGIAAPGIESLAPILVGGMESLLDLLPAGSPILASDP ERIRARAADLVATTEEFLAAAWSAAAGGADTPLEASKASFLDLADLWGSGNRPWWELTDL PPADLASAIDEAEADSPSTDGPAPVVVSPTLMRVGARDVHPYRGDFARAAADLTDLARDG WRIVVTT >gi|292821141|gb|ACYT02000023.1| GENE 2 1336 - 1938 744 200 aa, chain - ## HITS:1 COG:MT1042 KEGG:ns NR:ns ## COG: MT1042 COG0193 # Protein_GI_number: 15840442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 6 197 4 189 191 157 48.0 9e-39 MTTDGPWLVVGLGNPGAQYAFTRHNVGYLTLDVLASRGGATLTSHRSRTHTADVRLGIGP GGVPGPRVILARSDSYMNTSGGPISALATFHKIDPSRILVIHDDMDLPAHTLRLKVGGGE GGHNGLKSLSQHLGTRDYARLRIGVGRPPGRMDPADYVLATLPSKERPEWDVTFEQAADV VEDIVTKGFAPTQMALHTGS >gi|292821141|gb|ACYT02000023.1| GENE 3 1928 - 2791 1088 287 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_11764 NR:ns ## KEGG: HMPREF0573_11764 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 67 252 128 307 363 119 40.0 1e-25 MGISKRAWQVAGAAAGGASLFGGGLAIGRLLRLDSQRGDYRKAWENHNLATLDRLRELDE HPEGERPYLIVSLGDSSVQGVGASRVTESYPARLASSIAAQMDREVLLLNLSLSGATIES VELTQIPQMRGLGLLDGPYRPDLVTLTIGGNDVMTEDMAPGQFEERLRRVLVFLPADALV STIPSFGIMPQESRAQDMSDRIGSAVSDSDAHLVDLRSLTQEYSLPTYTFAYHAADFFHP NSAAYTKWAQLFADAWATSRREAAPVVEDAPQWDMLSARVAQSEYDD >gi|292821141|gb|ACYT02000023.1| GENE 4 2893 - 4140 1110 415 aa, chain - ## HITS:1 COG:FN2107 KEGG:ns NR:ns ## COG: FN2107 COG0153 # Protein_GI_number: 19705397 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Fusobacterium nucleatum # 37 414 24 388 389 199 34.0 6e-51 MTDLVWADAATPDEGAAQAADLFRDAFGYEPRGVWSAPGRVNIIGEHVDYNGGPCVPIAL PHRAYVALSPREDRTIRLISPQTREAIDVLDLDVIGPKGTPGEVANHWTAYLAGVAWALE QAGYGPLPGFDAALWSCVPLGGGLSSSAALECATAVALDEVCSLGLAGTIEAPNDEGRKV LVDAARAAENQVAGANTGGLDQTASLRCREGHALALDCRDMSTRQVPFDLSAVGLELLVI DTRAKHSLADGQYGSRRADCEESARILGVGQLVEVEDLGEATAALGNERLAARTRHVVSE IARTRAFIELLDEGPLDGTRLAVAGALLNDSHDSLRDDYEVSCEELDVAVEAARAAGAHG ARMTGGGFGGSAIALVDAHAVEGVARAVAAAYAERGWEPPHFIRSLPGAPAGRLD >gi|292821141|gb|ACYT02000023.1| GENE 5 4273 - 4821 635 182 aa, chain + ## HITS:1 COG:BS_yjcG KEGG:ns NR:ns ## COG: BS_yjcG COG1514 # Protein_GI_number: 16078250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Bacillus subtilis # 16 136 5 124 171 65 30.0 5e-11 MFLPQRLPDQDWLGVVVAIPEPWVTQLTDLRLRLGDLAGSRIPAHITLMPPTPVAREARA EVIDHLRSIASRHSPFRVTLSGTDSFRPVSNVAFMTLAEGASDCTDLAEEIRSGPLDHET RFPYHPHVTLAQDVDDVALDMALDIGATVEASWIVPGFRLDRIAPSGIYSSMALFDFDAS GH >gi|292821141|gb|ACYT02000023.1| GENE 6 4953 - 5780 994 275 aa, chain - ## HITS:1 COG:Cgl0651 KEGG:ns NR:ns ## COG: Cgl0651 COG0708 # Protein_GI_number: 19551901 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Corynebacterium glutamicum # 1 273 1 303 304 157 34.0 2e-38 MTLTVTTVNLNGIRAAHKRGFLDWLEASDTDVLLMQEVRAPEEISREIMGEAWESVWVPC RIKGRAGVGVAVRRGRAVLEGEPRLILDEAETDVDSGRWLEAVVRPEGGDTPVRVVSAYF HSGEKDTPKQEAKMAHLPRIGARMAELIAEEAGGGISSLVCGDFNVVRSEADIKNWKPNH NKRAGVLDEEIAFLNRWVEEGWRDTVRDLAGDVQGPYSWWSWRGQAFVNNAGWRIDYQYA TPALGERARSFEIGRADEYAERFSDHAPVSVTYEI >gi|292821141|gb|ACYT02000023.1| GENE 7 5910 - 6818 864 302 aa, chain - ## HITS:1 COG:Cgl0629 KEGG:ns NR:ns ## COG: Cgl0629 COG0190 # Protein_GI_number: 19551879 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Corynebacterium glutamicum # 12 299 6 284 284 318 62.0 7e-87 MRAPWEGPAGVLDGKATAAAIKAELKERVDRLREAGVVPGLGTILVGEDPGSVAYVAGKH RDCAQIGAESIRVDLPADATQEQVEAAIDQLNADPACTGYIVQLPLPRGIDTNAVLERID PAKDADGLHPMNLGRLVLRGSGPIDSPLPCTPRAVIELMERHGIDLAGKNVCVIGRGVTV GRSIGLLLMRKEVNATVDVCHTGTTDLADHVRRTDVIVAAAGSAGIITRDMVAPGAIVLD VGVSRVQGEDGKARLMGDVADGVDEVASWLSPNPGGVGPMTRALLVTNVVEAAERQAGIS AN >gi|292821141|gb|ACYT02000023.1| GENE 8 6821 - 8104 1840 427 aa, chain - ## HITS:1 COG:Cgl0969 KEGG:ns NR:ns ## COG: Cgl0969 COG0112 # Protein_GI_number: 19552219 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Corynebacterium glutamicum # 2 427 8 428 434 604 71.0 1e-172 MDSLNDMTLAQLDPEIQAVLDAELGRQRDTLEMIASENFVPRAVLEAQGSVLTNKYAEGY PGRRYYGGCEFVDVAESLAIERAKQVFGGDYVNVQPHAGAQANAAALMAMANVGDPILGL SLAHGGHLTHGMRLNFSGKNYKAVAYEVDRETMRIEPEKVREAALAERPRVIIAGWSAYP RHLDFQAFRDIADEVGAALWVDMAHFAGLVAAGLHPNPVPFADVVTTTVHKTLGGPRSGM ILSSRGEQWGKKLNSSVFPGQQGGPLMHAIAAKAIAMKVAQTDEFKDRQRRTLEGAQIIA ERLGADDAKTAGIKLVTGGTDVHLVLVDLVDSELNGQQAEDLLHEVGITVNRNAVPFDPR PPAVTSGLRIGTPALATRGFDAEDFAEVADIIGTTLSQGASGGNVEVDALRARVKKLTDK HPLYAGL >gi|292821141|gb|ACYT02000023.1| GENE 9 8280 - 8393 70 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVSLVANQRVKYKRKIAVISCTARVFQERWKTHVTGW >gi|292821141|gb|ACYT02000023.1| GENE 10 8538 - 9233 970 231 aa, chain + ## HITS:1 COG:CAC3073 KEGG:ns NR:ns ## COG: CAC3073 COG2148 # Protein_GI_number: 15896324 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Clostridium acetobutylicum # 32 220 28 211 222 205 50.0 4e-53 MTTLTKPTARAASTALAFEHASDLAASADNAIKRMCDFFAALVGIILLTPLWIIVALMVR LNDGGPAFFTQERIGLNGTTFTMYKFRTMRMDAEELKASLTEANEADSSAGNSIMFKMAN DPRVTRIGAFLRKTSIDELPQLFNVLRGDMSLVGPRPPLPSEVAQYESRVMGKFAVRPGI TGLWQISGRSNLSWDETVHLDLSYAQHRSLTLDAWIILQTIPAILRHEGAY >gi|292821141|gb|ACYT02000023.1| GENE 11 9344 - 9523 116 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNGVAHTNHYEGATDPWDAGGKGAPVCRCHTLVRLMNCSLCEHCHEVLRWGLTALSKPV >gi|292821141|gb|ACYT02000023.1| GENE 12 10087 - 10866 800 259 aa, chain - ## HITS:1 COG:no KEGG:cauri_0415 NR:ns ## KEGG: cauri_0415 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 14 190 11 185 188 135 47.0 2e-30 MTATSTPAGGEAEPEAAGAVGAPATDPAFDAMAQRVLTRGHTTTWLNHWSLLHADFRALA RMHAVGFDGTLLQMRLRAAGHEVARTSADLVLPHVFERLEDGTRIALIGAVPEAGQAAAD RLHRFDVQVIDGYEGLRRLKADPSVLTAFDPRLVIVGLGAGLQEVVASFVLDLLPEASVC TAGGWIDQYARAADDYFPTWVHAARLGWAWRIAHEPKRLTKRYTVEALDFVAHAPELISR LEAMGSFDDLGLVGGVTLR >gi|292821141|gb|ACYT02000023.1| GENE 13 10872 - 14342 4352 1156 aa, chain - ## HITS:1 COG:no KEGG:cauri_0414 NR:ns ## KEGG: cauri_0414 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 12 1154 39 1155 1212 798 41.0 0 MSFMRRCLALGLASVTSLSVLAFSPAAHAATDPLHDGLSAATAAASCWEIKQNDPRSQNG TYWLQTSTMDAPGQFFCDQTTDGGGWVLIGRGREGWETWSQGQGDQEKLKTRPRTAGDFE VVQASHQTVNGLLGGTSVSDLEDGLMVQRASNHKGTAYQTVRMRFPKMRDFIWPFKSAHP VDVKFDHEWWVQGGIVWAGFGTNTSWGYVNLIASAQNKYTLGWGYGPLATSWYDTSSSTS YFHRNGSIINPYAEAYVRPQLRSTDASFRAIGDGGTPAKKQKATASEFASPMSWGVAGNL NGSVQEGNIQVQAFEQIGSTMYVGGNFTGVKKGKNGQEIASSGLAGFDATTGEWNGQTFS FNNQVKDLAELPNGKLLVAGDFTKVNGETHVGTVLIDPATGQIDPSWTLQARTGTNGGRV SVKSIKIINDHIYLGGIFTHFQGNGASWTYARNGARLDINGKPDRSWNPEFNGSVIDIDV DENEAYYYAAGYFTRAHDRVVENAGRLSTAAGAELDQSWTFRHSYLIGKYQQTVTAANGR VYFGGSQHSLFGYNSDTMTRTSGSITMYNGGDLQASTRSATGVVYASCHCSDYAFQDAYQ YLTLGTTWTRADEIQWVGGWDEATGRQLGWTPYRLGSLRSSGAWALEMADDGALWAGGDF NYSYTSLTSGQWSGGFVRMPARNATAPAVPANLRASDGNSKDVTLKWSSVPGAVSYDILR DDRPIATTTSNSVTVPLGGKNRFFVRAVASDGLRGASTHVYTVDSNGKPTQPDGATLLVD EDDAWAYHWSTDPVAENWAQTSFDDSAWSRGASPIGYGGPGINTTLTPGAAKNRPVTTYA RINFTVADPTAIGGVNVAVTADDGAVVYVNGNEVDRQRMDDGTVDASTFANASVTTPAAR ADRQLVFVPADKLVAGTNTLAVETHLNYRSSSSMTIDGMVKVVTKGDEPTPEPDPEPDPE PAPQPQPDVPLTPDPDKPLEVLDVSAMNLGNFLYPGMYWNYWNSKETPDPAWNSTADLSS WKHGASPLGWGDRDAGTPFTLPAADRAITNYFVRDVNFGTLSADFEVILNVRVDDGAVIY INGTEIKRVNMPEGTIDANTRASSNVGLATAKNNIVRIAVPRKVLRDGVNRIAVETHANY ANAASVTFDLKASLVR >gi|292821141|gb|ACYT02000023.1| GENE 14 14569 - 18021 3920 1150 aa, chain - ## HITS:1 COG:no KEGG:cauri_0414 NR:ns ## KEGG: cauri_0414 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 24 1150 39 1157 1212 799 42.0 0 MASAISRLAILATAPIVACASLALAPMAHAVGTGQGDSAPGQAIVRDGSSAATAAASCWD IKQRNPSASDGAYWLQTPAMDHPAQFFCDQTTDGGGWVMIGRGREGWEAWSGGKGDPAKL TTRGRDASAFDVVQLSNDTVNQLLNNVPVKDQADGVRVMRSSSPSGHSYQSLDIRFQKMT DFVWPFKMAHPISISMDKRGPVSDIMWNTSGYDQGWNALQVYPSARTGWQIGWGYGPVAA SWGGDVTSRGSFLRKSGQTVFPYAEAYMRPRLSSEDASFSRISDEGLPASTVTRAVSQYA AKTSWGVSGNLNGSYAEGNIQVQAFAQVGSTMYVGGNFTGVKQGDKGTEISSRGLAAFDV STGDFTGQTFDFNAQVKALLALPDGRLLVGGDFTQVNGQTHVGTAVIDPSTGQVDSSWNL QVSNALRGGAVSVRSLAYYDGNVYIGGSFTHLSGGGRSKVYARNAGRVDLSSRPDRSWNP EINGSVQAVGVSEANSSFYAGGHFTKAHGTERAWYAAKFSTQPGAAQDTSFVFEPSTTTA GKYQQTIATAGNRVYIGGSEHSLFGYDAGSNKRVSGSVTFSRGGDLQASTVSSKGIIYAS CHCSDASYQDMYLWQMDSSWSRVDEIKWVGAWDAATGENLKWTPFELSSRRKTGAWALTT DNYGNLWVGGDFTLSHTDATRTQWNGGFARYDSRDNVAPEAPSYLRSSASNDSTVTLAWK GIADAVSYEILRDDRPIATSETTTVEVPRGGENRYFVRAVDAEGNRSATTAVYTAPAPGQ VDASNPVLLEADATWNYRSDASAAPENWAQASFDDSAWPTGAAPLGYGDSAIATQIATKG SRPVTTYYRTHFRVADAKGLKGINVKYLADDGAVVYINGVEVDRTRMGAGTVSYTTRADA APNFAAASASPSEIFVPASALKTGDNVIAVETHVNYMRTATVAMQASIFRVEGTPDDNSS VPTERSTEPTDATQPINAASVKSGTVIHTGDEWNYWTSTDAPASDWATTGSLQSWNRGSG PIGWGDSAAVTALDIAKKDRAITYYFARDIDLGPITPNTTLTVKVRADDGVVLRVNGTII DMKRMSDGKITHTTYANSAVSAAKAASDLLEVTIPASLLTSGVNRIGVEEHLNYKGSPSM TFDLNATLVK >gi|292821141|gb|ACYT02000023.1| GENE 15 18138 - 19625 1797 495 aa, chain - ## HITS:1 COG:PAB0783 KEGG:ns NR:ns ## COG: PAB0783 COG2244 # Protein_GI_number: 14521379 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Pyrococcus abyssi # 2 438 3 445 511 100 23.0 9e-21 MSEANQARRSLARGGIVGFVGAAASAVLGFAFTIILSRMLGAEGAGIVTQATGVFAIVMA LAKVGLDSTAIYLMPRLSLDAPEEIRATLSFMASMTVGVSTVCVLILEAVAPLIWNAEVA ASTRAVLWFVPIGALTLVASAALRALGNMREYVLIQNLLLPGLRPLLVALAAAFTGSLAF VSVAWALPFVVVHVAAWWLLLRHMPSAADSVGRWPTAQRRRQVVSFALPRTLTAGLEQAL QWLDVLLVGLLAGDAASGIYGGAIRFIQAGMVVDTALRVVVSPQFSKLLHQGKTKELRDL YSTASIWLVLFAAPIYALMAIYAPALMRILGDGFAPGANVLVVLCIGSIVTFMAGNIHSL LIMSGRSGWAAVNKIVVLTLNVVGNVIFIPRGGMVAAAIVWAVCMVLDAAMATIQVSRFI GVTPKLSEVVKPILVVGVSAVIPGGCIAWWLGRDSFVATIVGSALAVLVFACVCWVFRDR LHLSGLGSLARRRRG >gi|292821141|gb|ACYT02000023.1| GENE 16 19685 - 20338 897 217 aa, chain + ## HITS:1 COG:no KEGG:cauri_0412 NR:ns ## KEGG: cauri_0412 # Name: not_defined # Def: putative secreted protein # Organism: C.aurimucosum # Pathway: not_defined # 35 217 72 258 258 62 31.0 9e-09 MDFINSLSPARKKSLLAAAILLIIALVIAGFLRLTGSSETDMAASAASGAQSAEEDPQSD IPQSVAKTITPQSGGPANESGSLATDAEATGQATFVMNTLWDAYTDPEQARATDLSSVLT ASALEEFDAQALEWTRDGTRTTGSPTLEDVHILSDDGAGNVTVSACVDSSNVRVLNDAGT ALTDDTTMTRALTYFLFVKDGGAWKLSGFSFPDDPTC >gi|292821141|gb|ACYT02000023.1| GENE 17 20259 - 21722 1804 487 aa, chain - ## HITS:1 COG:no KEGG:cauri_0411 NR:ns ## KEGG: cauri_0411 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 4 410 7 411 436 321 47.0 5e-86 MREDAQDLPAWPFVVAYSAYFLWWVLGSGDLMWPLFASIMLVFMIGRHGLRFPPGSILWV FFLAWVLASMTMLDTGGRVIGAFYRFLLHISPGIFAVYAFNARKSLSVRTIVGTMWGFLA STTIGGFIAMAAPTLRFKTLMYYLVPRALHSNDFVKEFTKRATTQWTPSSWILSDPRPSA PFIYSNTYGNVYSLIFPLALVFAYVLWRERSKWRFIVAAVCALSVIPAAATLNRGMYIGL IVIVVWVGFQRLRAGAWRTVLGIVAAIVVGVIAWLATPASQSLLERVAASSSTEDRASNY VETLYELQQSPLLGFGAPRPSASPWLPSLGTQGQFWTVIFSYGLVGLVLFLAFFLRMFPR IWRATDVYGSILGGIILATLVEQFYYGMNTGLMISVVAVALLSRHLEEESDPIKRAEAER DGRANAGSIAGTVRAERAVRMGQWTSPAANDGAFATHMLARLNKSGRRGTRSRTASTRRR PSQTENR >gi|292821141|gb|ACYT02000023.1| GENE 18 21773 - 23116 1467 447 aa, chain - ## HITS:1 COG:SMb21190 KEGG:ns NR:ns ## COG: SMb21190 COG0463 # Protein_GI_number: 16264604 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Sinorhizobium meliloti # 87 371 34 297 345 88 28.0 2e-17 MSAEETTAADHKAASIWHVDRTARVSQLISGDPSDPRALVLVRDNGRNSAFVDIEGTDHP ETDPRVLEVEPAPARGWEEGAGADVDATVVMCTVGSCDMLEDAVRAILAQDHQRFTLVVV DNAPHTGLTREKLAGIDDTRLSIVSASRPGLSRARNRGVLAARGEVIVFTDDDAIVDPHW LTAMIDPFTASPYVAATTGIALPLEQRYAPQRWFESRGGFPKDMSPRVWCVGDIPEGLEV LGEKGDGGPLFPITTARVGAGVCMAMRRDVLMEVGPFDPALGAGTSTRGGEDLDMFARIL ATGDVIIHTPDALVHHRHRVDEAGLDKQIRGNGSGMAALLTKAIIAKPSVLGTLATRVPG VLNRVKPGGARVAGTDEDVPGSLTKSEIKGFLEGPFLYLSSRTRNKLGAPRQAERAPAQD SVTAPSSAGEAQASSATETTGEGNGNA >gi|292821141|gb|ACYT02000023.1| GENE 19 23113 - 24405 1597 430 aa, chain - ## HITS:1 COG:no KEGG:cauri_0409 NR:ns ## KEGG: cauri_0409 # Name: not_defined # Def: hypothetical protein # Organism: C.aurimucosum # Pathway: not_defined # 5 272 8 260 381 88 30.0 4e-16 MILTPPPTGGQQILRHALARRWTSIVAGTVAGLVVGVAAAFGVPASHSATVSMTVTSPSI TPAPAVRASLSNTTDMVTEQGIAKSAAVLDVAAARLGNGVTAEELRSNMEVSGDTNGTIV KIEYVAPTRQQAVDAADTIANAYLTERTALVEQRADEMAAGINEQIEALEAELASLQPLT DEDGKTKDNPRAAEIRTELTKLAKDAEQLAPYHATAGRVITPAAASSDEVSPSKSRLILI TTVVGLFAGLVLVLIRETRSRSLTSPTQLADLTALPVWSADEGAPEPWLAPTRMLAMAID RDHWVDLIVDASDPQARDLHRVLSASLAETRVPAPRLIDINQPLASLLDEVRPSRHVLVA VRKGHDLKALHALLDELAIINREVNGLIYLGDQVAAPASAPTTPAQSAEVIEPEAEEEAA EETSSEKGKK >gi|292821141|gb|ACYT02000023.1| GENE 20 24402 - 25310 905 302 aa, chain - ## HITS:1 COG:CAC2174 KEGG:ns NR:ns ## COG: CAC2174 COG0463 # Protein_GI_number: 15895443 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 2 206 5 213 336 72 24.0 1e-12 MPELSVLLPARNAAGTITRAVASTLAAMPRDAELVVGNDSSSDSTVGEAIRGASRGGVVD PRLRIEDITPGEGGVSRVLTQLMERTDSRLVGRMDADDVSLKGRFKRTMRAIERGDDMVF TQMIELRGSRPVPRMPYEITPEDMGWHLLLTNPVCHPTMLATREIMDRVGGYRSVPAEDY DLWMRVASAGGRIRRIAPWGLLYRIHPGQVTGNASWRSDSWKNPEQAQAFADLSVSLTGQ ELPRLVSLVSLPRDEAERELDSFVQVYTQGVASRPASSRRALERRLNARAAWVRSHLQGE QS >gi|292821141|gb|ACYT02000023.1| GENE 21 25303 - 26097 990 264 aa, chain - ## HITS:1 COG:no KEGG:cauri_0407 NR:ns ## KEGG: cauri_0407 # Name: not_defined # Def: choline/ethanolaminephosphotransferase (EC:2.7.8.2) # Organism: C.aurimucosum # Pathway: not_defined # 15 253 6 244 253 235 59.0 1e-60 MSLPVVLEPASSWGTRFSAYRSALAAAQKPGAGVPAYMRWVNRGAARVVAAACAAFGWTP NFVSFVSVCFSTLGLIVLVACDPAWWTGLIVGMALAVGFMFDSADGQVSRVTGASSKTGE WVDHVADAFRSPAIHFCTAVAVMVYLPESWWLAVVALVYGWVTSGQFMSQILAEQFVRAA GRKQTRGGNLRSFVLLPTDPGVLCWSFVLWGFGVPFMVLYTFLAVIAVAHSSISLRRRFR DLRALDAAAKEAAKQAATQGEPRA >gi|292821141|gb|ACYT02000023.1| GENE 22 26094 - 26591 527 165 aa, chain - ## HITS:1 COG:aq_1368 KEGG:ns NR:ns ## COG: aq_1368 COG0615 # Protein_GI_number: 15606564 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Aquifex aeolicus # 17 139 12 127 168 79 35.0 4e-15 MDETTQQRTPITGYVPGGFDMFHQGHLNILRAARERCDRLVVGVTSDEALIRMKGRAPVI PLKERCDLVSSLRFVDAVVVDLDQDKRLAWRLQPFDVLFKGDDWKDTPKGAALEAEMAEV GARVVYLPYTPSTSSTKLRRFIAPEDFSDEAPAKDSDQAAEGEAQ >gi|292821141|gb|ACYT02000023.1| GENE 23 26862 - 27782 1142 306 aa, chain - ## HITS:1 COG:BMEII0387 KEGG:ns NR:ns ## COG: BMEII0387 COG0788 # Protein_GI_number: 17988732 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Brucella melitensis # 29 304 4 281 294 316 55.0 4e-86 MASPANGAPASFMGMNLARLAPMTENAQLVVTLSCPDRPGIVHAVTGVIGGSGGNVIQSQ QFGDSDTGTFFMRVEVDSPKGRAPIDEGLARVAEEFAATYRVDDLGRKLRTIIMVSREGH CLTDLLYRQQTQGMPIDVIAVVGNHPDLAPVAQFYGVPFLNIPVTKDTKAQAERQLLDLI ASENVELVVLARYMQILSDEVCRAMQGRVINIHHSFLPSFKGARPYAQAHERGVKLIGAT AHYVTADLDEGPIIEQDVTRVSHADSTPDMVALGQDVERRVLAQAVRFHAERRVLMNGNR TVVFSR >gi|292821141|gb|ACYT02000023.1| GENE 24 28238 - 28747 277 169 aa, chain + ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 156 1 164 167 77 27.0 2e-14 MQIRLASRSDLAFIEGAYEHARAFMRENGNATQWPDCYPGRIDAEADIASEHCFLITDKD GPLAVFTFTPGPDETYTEIAGAWHSNADYHVIHRVAAVRGHGVARAIFRFAAEHADYLRC DTHEENIPMRRALESFGFQECGTITVANGTERVAYDWIKEEPRDGSSRP >gi|292821141|gb|ACYT02000023.1| GENE 25 28852 - 29217 211 121 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPDVPTRELHAAFAELHPIRCIAPVKEHCTRSERVQCSLIGCTTRSQQATARIHVRGSAA PPTGPTLRTTPKARGQLQHFSPKRGEHQTTMPLVLSGVTPISGVLHQLGANVILPNRPYA P >gi|292821141|gb|ACYT02000023.1| GENE 26 29164 - 29337 83 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQCCAKWCNATEQQAHARHGLLHCCSNTIPAELCRAALRRLGSIGPVREYYISSELV >gi|292821141|gb|ACYT02000023.1| GENE 27 29613 - 30602 1589 329 aa, chain - ## HITS:1 COG:DR0325 KEGG:ns NR:ns ## COG: DR0325 COG0039 # Protein_GI_number: 15805354 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Deinococcus radiodurans # 1 329 3 330 330 356 60.0 3e-98 MAEPRIVTVTGAAGNIGYALLFRIASGQLFGPDVPVKLHLLEIPQAVKAAEGTAMELDDC AFPTLAGVEIFDDVNRAFQGTNVAYLVGAMPRRAGMERADLLEANAGIFGPQGKAINDGA ADDVRVLVVGNPANTNATIAQNAAPDVPASRFTAMMRLDHNRAVAQLAHKTGAANADIKD VVVWGNHSADQYPDVSFAKVAGKPATELVDEEWLSSYYRPTVAKRGAAIIEARGASSAAS AANAAIDHMYSWIHGTPEGEWVTAGVMSDGTHYGVPAGLNFGFPVTSDGGEWQVVDGLEI SDATRAGIDHNIKALQEEYDAVKALGFIK >gi|292821141|gb|ACYT02000023.1| GENE 28 30805 - 31836 953 343 aa, chain + ## HITS:1 COG:XF0866 KEGG:ns NR:ns ## COG: XF0866 COG1230 # Protein_GI_number: 15837468 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Xylella fastidiosa 9a5c # 28 331 6 307 321 178 38.0 2e-44 MLNNRPSPSPSAGYAQESTPASSHIDEAVAHSQDHAHSEGGGHGGHSHDHSHAGASTKRL GWALTVTGAVVVAELVGAFWSGSLSLAADAGHMVVDASGLVIALIAAHLTRLPRDDKRTW GWARSEVLAAALQAGMLLIICAIVAWEGAWRLLSPPEVEAGPMLLVGIIGLASNVVSLAI LAGGRDANLNMKAAFLEVANDALGSVAVIVAAGAEWAFGWTRADAIASLLIAALMAPRAL TLLRRSVAILMEQAPANVDVTELRAHMLNVDGVLNVHDLHVAAVSSHLVTVTAHVTVSEH ADGPSRDRIVHQLGECACHHFPIAHSTFQLECPQHREHEHIEH >gi|292821141|gb|ACYT02000023.1| GENE 29 31940 - 32236 372 98 aa, chain - ## HITS:1 COG:ECs0047 KEGG:ns NR:ns ## COG: ECs0047 COG2440 # Protein_GI_number: 15829301 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli O157:H7 # 8 98 6 95 95 75 42.0 2e-14 MAQFVIESVPARLAGNTYYLDEEESHIEVNQELARATGAGALLERVCPAKVYSVEADGTV GVEYAACLECGTCLAVAPKGVLKWHYPRGSFGIMFREG >gi|292821141|gb|ACYT02000023.1| GENE 30 32263 - 32700 652 145 aa, chain - ## HITS:1 COG:ydiS KEGG:ns NR:ns ## COG: ydiS COG0644 # Protein_GI_number: 16129655 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 6 145 292 429 429 93 40.0 1e-19 MVAHDLTRPGLMIIGDAAGFTLNMGLTIRGMDLAAGSALAAAEAIEKAFQTMDFGQQSMD QYRALLDESFVGKDMATYAKAPAFLERPRMYKDYGKLAAEVFYGIFNHDLTPRRHIRKVG LDALKASGLKLTQIMGDVLAGIRAL >gi|292821141|gb|ACYT02000023.1| GENE 31 32682 - 32900 257 72 aa, chain - ## HITS:1 COG:no KEGG:Arch_1365 NR:ns ## KEGG: Arch_1365 # Name: not_defined # Def: major facilitator superfamily MFS_1 # Organism: A.haemolyticum # Pathway: not_defined # 8 57 7 56 425 67 70.0 2e-10 MLSMLTQERHANDLSRGHRFILLVLVSIGSSIIYTPVYLQYVFEDPLGKALIASSTDATS RLRTVRPWWRMI >gi|292821141|gb|ACYT02000023.1| GENE 32 33646 - 34953 605 435 aa, chain - ## HITS:1 COG:lin0883 KEGG:ns NR:ns ## COG: lin0883 COG1232 # Protein_GI_number: 16799956 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Listeria innocua # 4 396 5 417 459 65 22.0 2e-10 MKTLVVGAGISGLACADALARSGQDVEVYEASARAGGRIETATVAGCRVEVGANFLSSTY RVIPRMAERLGVALRPIRARAGIIVDSQAVTYVPNGFAMVRAGVMGWREAARAGWQLARQ FPRLAKANPADPAHWADIDVPADEWCSARFGEAFTRAVIGSSFRGYYFQDLADTSACAAL AMVSYGARPFVTLTADPGLEAIPRALASGLSIHYEAPVARVERDGTGGALVLANGTVVEA DRIVLAVPGPVAASLLVDPSPLEAQLLSTPYSSGLLVVLACRRRLSERELGGAYGLLASP SQAGPIAALCVASRAGHAAPGVDAVTVMFDGEAAQRSIFMGESDTEVTARAVAVVCELAP TVGDAVDLEASRVVRIPHAMPTCRVGRVSQVRRYRKEHTGPVVLAGDYLAFPWSDSAALT GLWAANCARVSGERD >gi|292821141|gb|ACYT02000023.1| GENE 33 35114 - 35965 1034 283 aa, chain + ## HITS:1 COG:no KEGG:RER_46830 NR:ns ## KEGG: RER_46830 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: R.erythropolis # Pathway: not_defined # 1 211 6 219 263 98 38.0 2e-19 MADLAGTTTRTVRYYHRLGLLPVPPLVAGRRDYGIEHLARLLRIRWLAESGIPLAKIAQM LPEEPAQGRSAVEADLLATRAQIDARIEVLHHQRARIDELVARVRSGEALSPLPIVLERF YDHLEDLVEDPATLPIIHTDRRMVLALAISGLIPASLSPFIEGFSDEDRRAVVRMLTTFA TLDRSRYPGAYGDEERERVIEELEEAEWAVLERNRATALALLRDLPSGGPGHLLWKRVAR LSKIGYPEPDQRRVIDDLVRRLQADPEFGPVLEEKTGKDWNIV >gi|292821141|gb|ACYT02000023.1| GENE 34 35958 - 36872 983 304 aa, chain + ## HITS:1 COG:Rv1218c KEGG:ns NR:ns ## COG: Rv1218c COG1131 # Protein_GI_number: 15608358 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Mycobacterium tuberculosis H37Rv # 5 297 10 297 311 275 53.0 1e-73 MSNLIEAEGLIKSFGRVKALDGLDLGVGQGQIHGFLGPNGAGKSTTIRVLLGMYHTDGGR ARVLRMDPAREASAINRRLAYVPGSVSLWPSLTGRQVLDTLAGLRGSRDRAREEELTERF DLDPTKKVRTYSKGNAQKVALVAALSAPVDLLILDEPTSGLDPLMERVFTDTVREAADGG ATVLLSSHILAEVQDLCSHVTIIKDGRTVESGDLSHLRSLAKTAIRIGVGESDARRPRLV ETLAALGAHVRPTGTRVETRVPSSLVPGVLSVVAELGAEDVQVEPASLEDLFMSHYSGNQ GARS >gi|292821141|gb|ACYT02000023.1| GENE 35 36869 - 37751 808 294 aa, chain + ## HITS:1 COG:Cgl2980 KEGG:ns NR:ns ## COG: Cgl2980 COG3559 # Protein_GI_number: 19554230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative exporter of polyketide antibiotics # Organism: Corynebacterium glutamicum # 23 285 4 268 518 107 29.0 3e-23 MSAFTGLRRCLGLATRRYRWQALAWMVPLWLFLLGHPIALQRTYPSFEERTALLTQMRDA PGVRLLFGPLPATGGVGEFASWEDGGYLLWFVAIMAIMLTTVLARRDEQDGHVEVVLGAG AGRWVPFASATAWALGAMALTGTGLAVSLIGVDAVVGETPLRGALVFGGVAIAQGWAFAG IALVASQLVRDTSAARGLSFTVFGAAFAVRVLADETGAAWLRWLSPLAWRDVAEPFGAER VWVLAVFALVVAALVALAALLHSRRELLGAVLADRSVSARRWRVRSPLGLTARL Prediction of potential genes in microbial genomes Time: Tue May 17 06:21:57 2011 Seq name: gi|292821140|gb|ACYT02000024.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.30, whole genome shotgun sequence Length of sequence - 595 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 51 - 311 128 ## gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 + Term 470 - 517 1.2 + 5S_RRNA 302 - 370 97.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. Predicted protein(s) >gi|292821140|gb|ACYT02000024.1| GENE 1 51 - 311 128 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293188963|ref|ZP_06607697.1| ## NR: gi|293188963|ref|ZP_06607697.1| olfactory receptor 9A4 [Actinomyces odontolyticus F0309] # 3 86 1 84 84 103 98.0 3e-21 MGVGRLFTCRRELVCGFVVVVHCSGGWVFGLVFWGVWVLFVNSIVCLFVFYACFLFLSVF GWDCWLALFGWLVFPGFNVFVFVRRV Prediction of potential genes in microbial genomes Time: Tue May 17 06:22:03 2011 Seq name: gi|292821139|gb|ACYT02000025.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.31, whole genome shotgun sequence Length of sequence - 195 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue May 17 06:22:03 2011 Seq name: gi|292821137|gb|ACYT02000026.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.4, whole genome shotgun sequence Length of sequence - 299 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 298 104 ## gi|154507754|ref|ZP_02043396.1| hypothetical protein ACTODO_00236 Predicted protein(s) >gi|292821137|gb|ACYT02000026.1| GENE 1 52 - 298 104 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507754|ref|ZP_02043396.1| ## NR: gi|154507754|ref|ZP_02043396.1| hypothetical protein ACTODO_00236 [Actinomyces odontolyticus ATCC 17982] # 1 82 316 397 533 135 98.0 8e-31 MSGGLSDLIANNPASAAYVDKMAPEMRPVVQYTTLLAVVMVALVDTAVVQRVLGLAASEE RGLSEAVLACGVPRTRTLVAAV Prediction of potential genes in microbial genomes Time: Tue May 17 06:22:13 2011 Seq name: gi|292821121|gb|ACYT02000027.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.5, whole genome shotgun sequence Length of sequence - 15527 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 9, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 394 278 ## gi|154507754|ref|ZP_02043396.1| hypothetical protein ACTODO_00236 2 2 Tu 1 . - CDS 419 - 1237 651 ## COG4377 Predicted membrane protein - Prom 1384 - 1443 1.6 + Prom 1307 - 1366 2.0 3 3 Tu 1 . + CDS 1401 - 2783 1116 ## COG4222 Uncharacterized protein conserved in bacteria + Prom 2860 - 2919 2.5 4 4 Op 1 . + CDS 2995 - 3300 334 ## Ndas_0985 transcriptional regulator, AbrB family 5 4 Op 2 45/0.000 + CDS 3331 - 4254 339 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 6 4 Op 3 . + CDS 4258 - 5007 809 ## COG0842 ABC-type multidrug transport system, permease component 7 5 Tu 1 . + CDS 5152 - 5583 353 ## gi|293190069|ref|ZP_06608646.1| hypothetical protein HMPREF0970_00973 8 6 Op 1 . + CDS 5825 - 8224 1398 ## RHA1_ro09119 hypothetical protein 9 6 Op 2 . + CDS 8242 - 8862 5 ## Achl_4505 hypothetical protein - Term 8901 - 8952 10.3 10 7 Op 1 . - CDS 8969 - 10648 2749 ## COG0166 Glucose-6-phosphate isomerase - Prom 10677 - 10736 3.1 11 7 Op 2 . - CDS 10799 - 13054 2575 ## COG0205 6-phosphofructokinase - Prom 13108 - 13167 3.0 - Term 13161 - 13212 20.0 12 8 Op 1 . - CDS 13227 - 14558 2061 ## COG1301 Na+/H+-dicarboxylate symporters 13 8 Op 2 . - CDS 14727 - 15017 175 ## gi|293190076|ref|ZP_06608653.1| folate-binding protein YgfZ 14 9 Tu 1 . + CDS 15193 - 15526 335 ## gi|154507766|ref|ZP_02043408.1| hypothetical protein ACTODO_00248 Predicted protein(s) >gi|292821121|gb|ACYT02000027.1| GENE 1 2 - 394 278 130 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507754|ref|ZP_02043396.1| ## NR: gi|154507754|ref|ZP_02043396.1| hypothetical protein ACTODO_00236 [Actinomyces odontolyticus ATCC 17982] # 1 130 404 533 533 197 98.0 2e-49 GVVLLLVSGAALAAATATQVSEDHAAGRALVSTLTQLPGVVAAAGIAVFLVGAAPQWRSL AWAVIAWSSFARLFGGLIDMPAWAQDLSVLGHVADPWGTTHWLPLAVQLGVGIACCAGGL IAYRVRDIPA >gi|292821121|gb|ACYT02000027.1| GENE 2 419 - 1237 651 272 aa, chain - ## HITS:1 COG:BS_yhfC KEGG:ns NR:ns ## COG: BS_yhfC COG4377 # Protein_GI_number: 16078082 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 1 253 1 247 258 112 37.0 6e-25 MVSTASLVSMGVSALAALVLPIVILVAARRRWRFSLWSAAVGALVFVVFALLLEGGTHSL VFAAVPSLRSSPALYTLYGALAAGVFEELGRVCGFAVLRASDRRPDDVGRALGAGIGHGG IEAMLLVGVGMVSSLVTSVSIINAGASEAFLAGLPDAQRDTVARQFDSLINTPAPLYLLG IGERAIAIALHITLSVLVWMAFTGRIRRWWILGAILAHALADAGAALYQSGAVSVFVAQG WALIVTVILALAIRRIYVSATAPLARGAAQAS >gi|292821121|gb|ACYT02000027.1| GENE 3 1401 - 2783 1116 460 aa, chain + ## HITS:1 COG:alr4238_1 KEGG:ns NR:ns ## COG: alr4238_1 COG4222 # Protein_GI_number: 17231730 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 40 448 9 426 760 356 50.0 4e-98 MKPLSAATAACLPLSLCLLAAAPALADPPRSSTTDVLTVATFNASLNRDAPGQLLDDLAT ADNAQASNVAETIQRVNPDIILINEFDYDATAAAVDLFRTNYLEIPHNGSRPVSYPYSWS GSVNTGIPSGFDLDGDGSTSGPSDAWGFGKFPGQYGFVVYSKYPIKDEQVRTFQHFLWKD MPGALLPTNSDGTGWYSDEVLDSFPLSSKTHADLPVDVDGTTIHVLAAHTTPPSFDGAEQ RNKKRNFDEIRLWADYVSNRADYLYDDNGVRGGLSADANFVILGDYNSDPLDGDSYPGAI DQLLTNSRVADTAPTSLGGQREAELQGGANLTHRTEPKYDTGDFNDTPRPGNLRIDYVLP NTGTQVEDAGVFWPTREDEAFRLTGLYPFPTSDHRLVWSKLRFPRSFAPSEPSPSASHPE TPPPSGEGPRLANSGAHSGLLGLVVAAGVGGALLLARHRA >gi|292821121|gb|ACYT02000027.1| GENE 4 2995 - 3300 334 101 aa, chain + ## HITS:1 COG:no KEGG:Ndas_0985 NR:ns ## KEGG: Ndas_0985 # Name: not_defined # Def: transcriptional regulator, AbrB family # Organism: N.dassonvillei # Pathway: not_defined # 4 88 5 91 95 71 45.0 9e-12 MTPRNPAHYGPGGRGFFGTVTVGTRGQVSIPAQARKSLGLEPGDQLVVLTDPSQGLALIP LSVLVSQHADTNPIAALVRNTMAGTMPPEADSGPADAAPAS >gi|292821121|gb|ACYT02000027.1| GENE 5 3331 - 4254 339 307 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 298 7 307 318 135 29 2e-31 MTTPAIRATDVTKRYGDLTAVNGVSLEVHPGEIFGIIGPNGAGKTTFMECLEGLRRPTSG TIDVLGEDPSRPSTRWRERIGVQLQTAALPPKITVNEAMALFASMYSNPADPAQLLNELG IAAKGRSYVDKLSGGQRQRVFIALALLGKPEVVFLDELTTALDPQARLAMWVVVRSIRQG GATVVMTTHYMEEAEALCDRVAVIDAGRLIALDTVPGLIASIAKGTKVQLRTSQQLTRGI VDEIDGISDVMIAGTSVSMLWSGSGIPQAAIAAIEATGLTVTDIRTSSPGLEDVFLALTG RNMRQEA >gi|292821121|gb|ACYT02000027.1| GENE 6 4258 - 5007 809 249 aa, chain + ## HITS:1 COG:RSc0165 KEGG:ns NR:ns ## COG: RSc0165 COG0842 # Protein_GI_number: 17544884 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Ralstonia solanacearum # 63 247 194 377 381 67 30.0 2e-11 MRTFIQLCRVTAMRALREPVSVIFTLLFAPAFIGCMGLIFGNNPLPEFGGKGFLEANFTA FPGIVIAISALIIVPVDLVTQRGAGVLRRFRATPLNPALYLAADVVSRLTLGLVSFAAMY AIAVLGFGVRPASAGAFISTLAATMLGLAAFLAAGYLIAGRFRNVGAAQGLGNILMYPLI FTSGAAVPLAMLPPSILSITKYSPMTQLTYLTRGLWDGEGWGEHWIAALILLVFGTVCAA AAARFFRWE >gi|292821121|gb|ACYT02000027.1| GENE 7 5152 - 5583 353 143 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190069|ref|ZP_06608646.1| ## NR: gi|293190069|ref|ZP_06608646.1| hypothetical protein HMPREF0970_00973 [Actinomyces odontolyticus F0309] # 1 143 48 190 190 261 100.0 1e-68 MLCGADLGFSQADFFRSNASATAYILGLEAIQALAGTLCLGLIYPWGERVPRWCPLLGSR RIPTFLPLVLGGIGNALLYRISATLIIRFGSIWLGLTDGRTPADGMNGWQVAILVAAYAP MLLLWAPALTIGLIGYWRRRTTR >gi|292821121|gb|ACYT02000027.1| GENE 8 5825 - 8224 1398 799 aa, chain + ## HITS:1 COG:no KEGG:RHA1_ro09119 NR:ns ## KEGG: RHA1_ro09119 # Name: not_defined # Def: hypothetical protein # Organism: Rhodococcus_RHA1 # Pathway: not_defined # 94 477 20 357 361 207 37.0 2e-51 MTDSIPAPALVHELAAPSPTVLDIYVVWHPHDRAGKAVFDELVTHYHSERFSGLAGSAIE VFSRSLPLTPENETPCPIVTRDGQVDNGIDSKIISERRAPENTTSPFTVIIPVIGRHMIR ASHRDNSEWASYLKSLCTVRDNALASHSPSLLVFPIIDTKGLNTSVGVISSLTSRQGLVL NDNAYAPRALTRDIGQAIIQRLLWKQAGMLSPSESPRLRVFISHARGDIPATDLTGTTPR GVVAKVKALAEQTRLDTFFDVYDIQADSEWDSSIRERARTSALLMVRTDSYSSREWTQWE VFEAKQAGMPIVCLSALSAGESRGSFLLDHVPTVAYPQIIEGQNPTEGNQTADATDNAII SALNRLVDETLKFALWRCQEIPAAVYAATNSTTEPKSANHPGFDSAPPSPPEPTILLKFI QEHRDKFKDDHHLWLIHPDPPLLPAEQEFLVALCEQAGYDNGQVHLLTPRSFFAAGGTFG RCEPTLTTPILSRDRPLIGKKLGISMALSEDLDRIGLSPTHLESAVAEVAQMVLIGGGSI LYAGAPGTHVPDLTNAIMDTVASYTTSMKAYARHSTTPSQVECLLHYDKMFSLTVPHVVL RDTASIERLDRAANHFAPYASISVLDKEGNMNDDLKAFNPWEGTAEDTKRALTRIREALP RFCNARLLIGGKTLRQSPENPNGYIGDYPGIIEEALYTLRKGQPLFVAGGFGGAAALLAR ELGLGLDLPVPDAALTEMRQCTSYRNAIKEIKESFDPSRTGLSEDDLRLLATTQRASELG TLLAKGLASSPAHCHNADH >gi|292821121|gb|ACYT02000027.1| GENE 9 8242 - 8862 5 206 aa, chain + ## HITS:1 COG:no KEGG:Achl_4505 NR:ns ## KEGG: Achl_4505 # Name: not_defined # Def: hypothetical protein # Organism: A.chlorophenolicus # Pathway: not_defined # 2 184 100 277 308 78 28.0 1e-13 MQAFLSYHEDEQGDAYASALQGELRILGIDATMARHSIRPGADWALTIRKHLEASSALLC IGTTGYTKSAWCQQEIGWAIGRNLPVLWIRYDGEERSVGFLAARQDLEVLDTESSERTAQ MVASWLLSETQTREETKTSLLDALVHSSSFRNTRCIANVIASLGALSDEEWCRIEQASAE NPQVANAMHYKIPIVTWLRKKVRAST >gi|292821121|gb|ACYT02000027.1| GENE 10 8969 - 10648 2749 559 aa, chain - ## HITS:1 COG:MT0972 KEGG:ns NR:ns ## COG: MT0972 COG0166 # Protein_GI_number: 15840369 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Mycobacterium tuberculosis CDC1551 # 1 559 1 551 553 653 58.0 0 MSDIPVIDPTMTPAWDTLDQLADNFDPDLRKLFADDPNRTQTFTFDAADLHVDLSKNLVC PTLVGHLLALAEQTGVLELRDRMYAGEHINVTEDRAVLHTALRRPATDSLTVGGQDVIAD VHEVLEKVYAFARRVRSGEWVGITGKPVKTVVNVGIGGSDLGPVMAYEALKPYVQEGLEC RFISNIDPTDAGETTKDLDPETTLVIVASKTFTTLETITNAKVVRAWLLDGLRERGIVTD EASEKEAIAKHFVAVSTALDNVAEFGIDPANAFGFWSWVGGRYSVDSAVGTSLAVAIGPE GFADFLAGFHAMDRHFAEAAPEKNVPLLMGLLNVWYSNFLGADTHAVLPYSQYLHRFPAY LQQLTMESNGKSVRRDGSPVTYETGEVFWGEPGTNGQHAFYQLIHQGTRMVPADFIAFAN PTWALGDGDADMHELFLSNFFAQTKALAFGKTSEEVRAEGTPEAIVSARVFTGNRPTTSI MAPSLTPSVLGQLIALYEHITFVEGAVWGIDSFDQWGVELGKVLAKQILPAIEGSREALE AQDQSTQALIEYYRENRTK >gi|292821121|gb|ACYT02000027.1| GENE 11 10799 - 13054 2575 751 aa, chain - ## HITS:1 COG:SPBC16H5.02 KEGG:ns NR:ns ## COG: SPBC16H5.02 COG0205 # Protein_GI_number: 19112738 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Schizosaccharomyces pombe # 5 725 196 928 942 573 44.0 1e-163 MSTVRIGVLTSGGDAQGMNAAVRAVVRTALARGAQPYAIYEGWQGACVGGDSIKKMEWSD VSSILAEGGTVIGTARSADFRTYEGRHRAAANLLEHGIDHLVVIGGDGSLSGTNEFRGEW AQHVAELAAEGVISPETAAEHPALIIVGLVGSIDNDLVGTDMTIGADTALHRILDAIDQL TSTAASHQRTFVVEVMGRHCGYLPLMAAVAGGADYVFTPEDPAGPGWQDELAEHLRLGRE AGRRESIVLVAEGAHDRDGNELSTQLIADTIQERTGEDARVTILGHVQRGGTPSAYDRWM STLLGYAAVQEILASSAEDEPVILGVRRNRITRIPLMKAVHDTRAVKDLIAAGDYTAAQA SRGSSFSSMVGINQILSTPPQLTPEPTGEIKRVAILHAGGLAPGMNTAARVAVRLGIARG WTMLGVDGSWSGLADDRVRELSWSDVEGWAFKGGAELGTKRDVPPVEQFYALGRAIERNE IDALLVIGGMNAYLGVHAITSEKDRYPAFQIPMLLIPASIDNNLPGCELAIGTDTAINNA TWAIDRIKESAAASKRCFIAETMGRRCGYLTLMSALSSGAEYMYINEESPSLEQIAADAD RMVASFKSGRRLFLTLLNESASQYYDREFLADVFNAESEGIYDVRHQALGHMQQGGSPSP YDRLLATRLVARAFEQLLDQFERGDRGAYYIGQVGNAVEARPVKNMFDDLDIENRRPFVQ WWRDLVPVQRIVSLQNPGIEATPIPIDDPVA >gi|292821121|gb|ACYT02000027.1| GENE 12 13227 - 14558 2061 443 aa, chain - ## HITS:1 COG:Cgl2969 KEGG:ns NR:ns ## COG: Cgl2969 COG1301 # Protein_GI_number: 19554219 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Corynebacterium glutamicum # 8 411 3 402 412 343 51.0 3e-94 MREFLRKSGILVWVIAAIILATVLGSVRIGGDHLVPVEIGRIFATFSAIFSQFLSFSIPL IIIGLVTPAIADLGRGAGKWLGITTAIAYASTLFSGFLTYLVCASLFPRLLASTQLADVA EPGSALESYFTIEMPAPLQVMTALLLSFVVGLGLSMVPRGVLRKGFIEFRAIITRLIETI IIPLLPLHIFGIFLNLTYTGEAASVIRTLVRVVIVVLVLEVIILLTQFCFAGLVARRNPF KALLTMMPAYLTALGTSSSAATIPVTLRQTKKNGVSDAVASFTIPLCATIHLAGSTSKIF SFAFAIVLTQGLTVSSLQWVGFIFMLGITMVAAPGVPGGAIMAATGLLSSMLGFNDAQVA LMIATYIALDSFGTATNVTGDGAIALVVDRMAHGSIGTEGDPENARELAFDGMAYLDRVS VEGVVSPEELAESSARNSSETVA >gi|292821121|gb|ACYT02000027.1| GENE 13 14727 - 15017 175 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190076|ref|ZP_06608653.1| ## NR: gi|293190076|ref|ZP_06608653.1| folate-binding protein YgfZ [Actinomyces odontolyticus F0309] # 1 96 1 96 96 141 100.0 1e-32 MNEEEKTARARVGAWLGAALSALGVLGVIALAVSDHRHRAVLLMVAVLVGMGALRLWMPG RPWFASRARLMDVAVYVILAAIIWWFAPYVSTLAVR >gi|292821121|gb|ACYT02000027.1| GENE 14 15193 - 15526 335 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507766|ref|ZP_02043408.1| ## NR: gi|154507766|ref|ZP_02043408.1| hypothetical protein ACTODO_00248 [Actinomyces odontolyticus ATCC 17982] # 1 111 1 111 492 160 99.0 2e-38 MSRFIVVAPGSSEAAALATDELARVLGVATVDALAGTTATDAALRPASALPAAVEAVRAV GDDALITPAREASNRAFDHVAWNLNLAASTRAGVILAFDAEGASAELLAEE Prediction of potential genes in microbial genomes Time: Tue May 17 06:23:04 2011 Seq name: gi|292821092|gb|ACYT02000028.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.6, whole genome shotgun sequence Length of sequence - 30931 bp Number of predicted genes - 28, with homology - 27 Number of transcription units - 10, operones - 7 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 21/0.000 + CDS 1 - 1080 1728 ## COG0280 Phosphotransacetylase + Term 1091 - 1150 3.4 2 1 Op 2 . + CDS 1179 - 2378 1823 ## COG0282 Acetate kinase 3 1 Op 3 . + CDS 2467 - 3222 650 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Term 3397 - 3439 4.2 4 2 Op 1 . - CDS 3502 - 4407 905 ## AAur_3480 hypothetical protein 5 2 Op 2 . - CDS 4410 - 5420 1162 ## AAur_3479 hypothetical protein - Prom 5460 - 5519 5.0 + Prom 5441 - 5500 3.4 6 3 Op 1 2/0.000 + CDS 5525 - 6280 740 ## COG1051 ADP-ribose pyrophosphatase 7 3 Op 2 . + CDS 6301 - 8382 2772 ## COG0171 NAD synthase + Term 8394 - 8422 1.0 8 4 Tu 1 . - CDS 8543 - 8611 69 ## 9 5 Op 1 6/0.000 + CDS 8634 - 9662 1550 ## COG4607 ABC-type enterochelin transport system, periplasmic component 10 5 Op 2 11/0.000 + CDS 9721 - 10746 1428 ## COG4606 ABC-type enterochelin transport system, permease component 11 5 Op 3 10/0.000 + CDS 10743 - 11828 1079 ## COG4605 ABC-type enterochelin transport system, permease component 12 5 Op 4 . + CDS 11825 - 12580 231 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 13 6 Tu 1 . + CDS 12730 - 13086 367 ## gi|293190128|ref|ZP_06608666.1| putative tryptophan-specific permease, 5-methyltryptophan resistance - Term 13123 - 13177 16.1 14 7 Op 1 3/0.000 - CDS 13196 - 13567 601 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 15 7 Op 2 1/0.000 - CDS 13564 - 14385 832 ## COG0500 SAM-dependent methyltransferases 16 7 Op 3 . - CDS 14466 - 16139 1915 ## COG1109 Phosphomannomutase 17 7 Op 4 1/0.000 - CDS 16144 - 16797 799 ## COG0274 Deoxyribose-phosphate aldolase 18 7 Op 5 . - CDS 16818 - 17525 1069 ## COG0813 Purine-nucleoside phosphorylase 19 8 Op 1 . - CDS 17638 - 18621 656 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 20 8 Op 2 4/0.000 - CDS 18658 - 19944 1644 ## COG0213 Thymidine phosphorylase 21 8 Op 3 3/0.000 - CDS 19931 - 20386 434 ## COG0295 Cytidine deaminase 22 8 Op 4 26/0.000 - CDS 20395 - 21675 1734 ## COG1079 Uncharacterized ABC-type transport system, permease component 23 8 Op 5 24/0.000 - CDS 21662 - 22801 1579 ## COG4603 ABC-type uncharacterized transport system, permease component 24 8 Op 6 15/0.000 - CDS 22798 - 24363 1791 ## COG3845 ABC-type uncharacterized transport systems, ATPase components 25 8 Op 7 . - CDS 24456 - 25550 1854 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 26 9 Op 1 1/0.000 - CDS 25705 - 27984 2597 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 27 9 Op 2 . - CDS 28053 - 30419 2144 ## COG2374 Predicted extracellular nuclease - Prom 30503 - 30562 4.2 28 10 Tu 1 . - CDS 30634 - 30930 256 ## COG0516 IMP dehydrogenase/GMP reductase Predicted protein(s) >gi|292821092|gb|ACYT02000028.1| GENE 1 1 - 1080 1728 359 aa, chain + ## HITS:1 COG:Cgl2696 KEGG:ns NR:ns ## COG: Cgl2696 COG0280 # Protein_GI_number: 19553946 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Corynebacterium glutamicum # 38 359 138 459 461 390 65.0 1e-108 GAPAVEADVPVLNLPLGDEAAATLRATAAPTAVTPLAFQADLIERARAERKRIVLPEPDD DRVLQAAAQVLAAGIADITFVGDADYVAKRAGKLGLDLSAAQVISVNDPAYLERYAEEFA RLRAKKGVTLEQAREKVTDVSYFGTMMVHMGDADGMVSGAAHTTAHTIVPSFQIIKTAPG VSVVSSIFLMAMKDRVWAFGDCAVNPNPTAEQLADIAVTSARTAAQFGVTPRVAMLSYST GTSGSGPDVDVVVEATRLAREKAPELAIEGPIQFDAAVDAAVAATKLPGSEVAGKATVFV FPSLEAGNIGYKAVQRSSGAVAVGPVLQGLNKPVNDLSRGALVEDIVNTVALTAVQAQG >gi|292821092|gb|ACYT02000028.1| GENE 2 1179 - 2378 1823 399 aa, chain + ## HITS:1 COG:Cgl2695 KEGG:ns NR:ns ## COG: Cgl2695 COG0282 # Protein_GI_number: 19553945 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Corynebacterium glutamicum # 7 399 5 397 397 395 51.0 1e-110 MSSSSVLVINSGSSSIKYQLVDPETGDAIAKGLVERIGDPIGVIKHVHGDAVTEEELPVP DHTVGMREVLRLFDTEGPTLAEAGIVAVGHRVVQGGRHFDGPALITNEVRDLIEELCPLA PLHNPAHLKGIDVARELMPDVPHVAVFDTAFFQQLPARSALYALETETAEKYSVRRYGAH GTSHQFVSHEIAKLEGRDDLKQIVMHLGNGASVSAVKNGHPIDTSMGLTPLEGLMMGTRT GDIDPAVVFHLQRVAGMSVDEVDTLFNKKSGMKGMTGESDMRSVWEMIHNDDAPEVQQRA RTAMDVYINRLLKYVGSYTAELGGLDVITFTAGIGENDSDVRRELAEALAPFGVKIDVEA NKVRSGEPRVVSAPDSTVKIYVFPTNEELAIARQALTFA >gi|292821092|gb|ACYT02000028.1| GENE 3 2467 - 3222 650 251 aa, chain + ## HITS:1 COG:CAC0284 KEGG:ns NR:ns ## COG: CAC0284 COG0846 # Protein_GI_number: 15893576 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Clostridium acetobutylicum # 5 240 7 245 245 229 47.0 5e-60 MNSDVSTLAAWIAASPSTVFFGGAGVSTESGIPDFRGANGFYFQEREIPLETVLSIDFFE RHPQAYWEWFHEIYHPVEPNGAHRALASLEAAGRLDAVITQNIDGLHQRAGSRAVWELHG NWERLVCTSCGAVASLGDSVRVDGDPVPACPSCASQMRPDIVMYGESLDQDVIEAAVTAI SRASVLIVAGTSLVVYPAAGLINYFSGDHLVLMNATPTSADAHADLIIREPVGATLDRVM DKLRAQGIIPA >gi|292821092|gb|ACYT02000028.1| GENE 4 3502 - 4407 905 301 aa, chain - ## HITS:1 COG:no KEGG:AAur_3480 NR:ns ## KEGG: AAur_3480 # Name: not_defined # Def: hypothetical protein # Organism: A.aurescens # Pathway: not_defined # 4 293 5 299 300 288 54.0 1e-76 MRRRAVIVRRPTEFDELMDRYSTRGQVEFVLRSRGRTLESVERAHESHVAALARVRAGIP DGWASADVERDSLSRFLFAPEDVIVVVGPDGLVANVAKYVDTQVVVGINSVPESQAGVLV RCAPEEGICALRRLDEDADLRVDHLTMVQASVDDSRSLRALNEVFIGHPSHQSARYELRS GSVVERQSSSGLVVSTGTGATGWGASLKRGRHMGELPAPTSCSLAWFVREAWPSPFTGVE YTEGILDEGEDLGLVVASESLVLFGDGMESDRLTLTWGQSVRISRAPRALSLVDPAGLGE G >gi|292821092|gb|ACYT02000028.1| GENE 5 4410 - 5420 1162 336 aa, chain - ## HITS:1 COG:no KEGG:AAur_3479 NR:ns ## KEGG: AAur_3479 # Name: not_defined # Def: hypothetical protein # Organism: A.aurescens # Pathway: not_defined # 1 328 1 327 339 167 38.0 5e-40 MGTLRHHPFLIRYQGGAGDHVVQIRAGRTIRSGVGQSFWLRAGRCALAEVPTANRAHSFL VQATTADQQNINAQVAITYHIEDAEAAAAHYDFGIYPREAGADAQGLWQIDETVTRIAFS ALASAIGEMTLTDAISGSLEKVGDVLAQAFKADDQLRATGVTVVDARLLSLRPDEGVESS LRAPLLEQLQAEADRALYERRALAVERESQISANEMQSKLDLARKRADLVDQEGHNARRE AEEKAAADAIEVEAEARRITEKAKAYEVDWNTAGRARIANDAAYIQALAQAGPEVARALA LKEMAKNMPSFGNITITADVLSDLVAAFTGSAKAGQ >gi|292821092|gb|ACYT02000028.1| GENE 6 5525 - 6280 740 251 aa, chain + ## HITS:1 COG:DR0192 KEGG:ns NR:ns ## COG: DR0192 COG1051 # Protein_GI_number: 15805228 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Deinococcus radiodurans # 7 223 13 225 225 135 42.0 6e-32 MTSPLTIPVAVDIVALTVIDHTLHALIVRRGIEPFKDHLALPGGFLREGEQTEETAAREL EEETGITPPGHLEQLFSYGPEGRDPRGPVLSVAYLLLAPSFSPTRSGGDAAGALWHPVDA LLAPTSPLAFDHAEILADGVERARSKIEYSPLATSFCGPEFTITQLRTTYEAIWGSALDP RNFHRKATKTASFIEPTGGTVREGAGRPAALYRLVPGVDATAFVLDPPLRRPPTPTPASS MKSASAPSAQE >gi|292821092|gb|ACYT02000028.1| GENE 7 6301 - 8382 2772 693 aa, chain + ## HITS:1 COG:ML1463_2 KEGG:ns NR:ns ## COG: ML1463_2 COG0171 # Protein_GI_number: 15827765 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Mycobacterium leprae # 335 688 2 356 359 514 68.0 1e-145 MNFHSLYDQGFARVAAVTLPVHPARPFENAREIIDAARELDARGVAMGVFPELCVSGYAI DDLFLQDVLLDNVEKALAQIVEASADLLPFLVVGAPLRKDNALYNCAVAIHRGRVLAIVP KSHLPNYREFYEKRHFVTMPPRACERIEVPWGGVEEFSGGPVWVPFGQVLLSADDVPGLT IGIEICEDMWVPVTPATELALAGATVLANLSASPITVGRGADRELMVRSVSARCSAAYVY TAAGMGESSTDLAWDGEAMIYEAGDRLAIGERFQEGAHITIADVDLERLRTERKRQNSFT DNAQRYFAGDERMAPQEVEFTLDPPRTNLGLERPVNRFPFVPNDPTRLEQDCYEAYNIQV AGLVQRLRAIGNPKIIIGVSGGLDSTHALVVAAHAMDLLGRPRTDILCYTLPGFATSERT KKNATLLCQYLGTSFQEIDIRPAATQMLADIGHPYGEGEATYDVTFENVQAGLRTDYLFR LANHLRGIVLGTGDLSELALGWCTYGVGDQMSHYAVNTGVPKTLMQHLIRWVVASKQFDD HVGEVLLSILNTEISPELVPAKPGEKMQSTQDKIGPYNLQDFTLYHVLRRGARPSKIAFL AEKAWSDASVGSWPVGFPEEDKVAYSLEEIVKWERLFLWRFFSQQFKRSALPNGPKVMAG GSLSPRGDWRMPSDVSGADWAAELDEAVKGLVD >gi|292821092|gb|ACYT02000028.1| GENE 8 8543 - 8611 69 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLGLNKEKLGLPNCQTNHTEIL >gi|292821092|gb|ACYT02000028.1| GENE 9 8634 - 9662 1550 342 aa, chain + ## HITS:1 COG:Cgl0787 KEGG:ns NR:ns ## COG: Cgl0787 COG4607 # Protein_GI_number: 19552037 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Corynebacterium glutamicum # 1 342 1 338 338 297 52.0 2e-80 MSRTTTSLATIAAVAALGLAACSSGASTSSSTQSSSESSAAASETTQATQPSSVTVEAND GPVEIKLPVTRAASLDNRTFEVLQQWDVQLVAAPKKLIPATVTAFNGEDVADVGMHRDPN LEALVAAEPDLIISGQRFSKFDTQIKELAPDVPLINLEPREGKPFNEELIREVTELGEIF GKQDEAKKLVDDFNASIERAKKAYDGSSTVMAVDVSGGNIGYVAPGKGRTWGPVFDLLGL KPALEVEGATDSHTGDDISVEAIAEANPAWIFVLDRDAAITKDGSNTPAETVINGNAALQ NIAALQNKHVVYAPNDTYTNESIITYTEIFNSIADAFEAAKK >gi|292821092|gb|ACYT02000028.1| GENE 10 9721 - 10746 1428 341 aa, chain + ## HITS:1 COG:Cgl0788 KEGG:ns NR:ns ## COG: Cgl0788 COG4606 # Protein_GI_number: 19552038 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Corynebacterium glutamicum # 4 338 3 333 333 338 62.0 1e-92 MTHSPTTAPPTDAALEREANPASSKRRPVALALAALAVAALLVLSLSTGEYSILSQDDGW QIFLAVRVPRTIALVLSGAAMSMSGLVMQLVTQNRFAEPSTTGTTEWAGLGLLVIMIVWP GAPILVRMTCAIVFAFVGTMVFFALLRRVSLRSSLLVPIMGMMLGAVVSAISTFLALETN TLQSVSAWFQGSFTSVYEGQYEVLWIVTVVVAIVFIMADRLTAVSLGEDIAISLGVNYHR MVLIATGLVAVATGVVTVVVGSLPFLGLIVPNLVAMSMGDNLRTNLPWVCLAGISLVTIT DLLARTIISPFEMPVSVILGILGAFVFIVLVLRQAKKGAVL >gi|292821092|gb|ACYT02000028.1| GENE 11 10743 - 11828 1079 361 aa, chain + ## HITS:1 COG:Cgl0789 KEGG:ns NR:ns ## COG: Cgl0789 COG4605 # Protein_GI_number: 19552039 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Corynebacterium glutamicum # 21 361 33 371 371 353 62.0 2e-97 MSVLTSPAHREASTPAPTPTSSARTKRPARHTGAFTSPAARRRWWILFGVVCTVAILACI GLLAWKNPAHFGTPVFWRLARRRAFAVLAIAIVAVCQGMATVAFQTVANNRIITPSILGF ESLYRAIHTSTVFFLGVAGLNASATVGNFVGQLALMIALTLALYSWLLTSQRASMHAMLL IGVMLGAGLGSISTFMQRLLTPSEFDVLTARLFGSIANAQKEYFPIAVPLVAAAAIALVL LTRQLSVLSLGRETATNLGLNHRRTSVLVLVLVSILMATSTALVGPMTFLGFLVATLAYQ FSDTHDHRYIFAMSVALGAAILASAYFVMNHVFNTQGVVAIIIEFVGGLAFIVTILRKGR L >gi|292821092|gb|ACYT02000028.1| GENE 12 11825 - 12580 231 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 223 1 226 245 93 26 1e-18 MISIDSVVKQYSPSVRIGEVSLDIPAGGITALVGPNGAGKSTILTMIGRLLGIDEGTIEV GGLNVATTKSSELARTLSILRQENHFISRLTVRQLVGFGRFPHSKGRLSAEDEAIIDRYI GFLNLEELEGRYLDQLSGGQRQRAYVAMVLAQETEYVLLDEPLNNLDIARSVEMMRMLER AAREFSRTIVIVLHDINFAARYASQICALKEGTVAFMGTPEEIMRDEVLTDIFNTPVTVV PGPNGPIACYF >gi|292821092|gb|ACYT02000028.1| GENE 13 12730 - 13086 367 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190128|ref|ZP_06608666.1| ## NR: gi|293190128|ref|ZP_06608666.1| putative tryptophan-specific permease, 5-methyltryptophan resistance [Actinomyces odontolyticus F0309] # 1 118 1 118 118 189 100.0 5e-47 MHVGLIAAFLILAVALIAGGLYLFASGLTARAGMCRPPLGLRLQGVEPGSQAWERAHRTA WPILFGSGVLGTAHGIALAATTLMDTRISVPIVFIVSGFIVEVGLWLVAKGAGRASLT >gi|292821092|gb|ACYT02000028.1| GENE 14 13196 - 13567 601 123 aa, chain - ## HITS:1 COG:MTH1452 KEGG:ns NR:ns ## COG: MTH1452 COG1917 # Protein_GI_number: 15679449 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Methanothermobacter thermautotrophicus # 19 115 1 97 99 59 32.0 1e-09 MSLSPESNTEVPTPIMTDLQDIASMIQINEEATVSRTVMNAEGVRLVLFSFDKGEILSEH TAAMPVILHTLEGALEIEADGRTVVLKPGDVIHFGTRLPHAVRALEPSKLALYMLDRRER PKA >gi|292821092|gb|ACYT02000028.1| GENE 15 13564 - 14385 832 273 aa, chain - ## HITS:1 COG:MT2697 KEGG:ns NR:ns ## COG: MT2697 COG0500 # Protein_GI_number: 15842162 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 1 269 1 269 273 249 54.0 5e-66 MATHSESLAEALPFADRPVEKAPGHWVLARAGKTVLRPGGLALSTWALKRAVLPGSDVVE FAPGLGVTASAIIEVGPASYVGVERDPNASARVNAIASGVGRCVNADAAETGLPDESADV VIGEAMLSMQGEKAKRAIMSEAARILRPGGRYVIHELGMRPDSIAEEPATEIRRALARAI NVNARPLTVADWRRALEEVGLVVEETRTAPMALLKPGRVIADEGVLGALRIMRNVARDKD LRERVTTMARTFKKYDRHLCGVAIVARKPKESQ >gi|292821092|gb|ACYT02000028.1| GENE 16 14466 - 16139 1915 557 aa, chain - ## HITS:1 COG:PM1074 KEGG:ns NR:ns ## COG: PM1074 COG1109 # Protein_GI_number: 15602939 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Pasteurella multocida # 1 545 1 534 551 394 42.0 1e-109 MELLERARQWASHDPDPATASALSSDIEAAERGDEEAAARVGAAMNGPLQFGTAGLRGVV GTGESRMNLAVVIRATAGLCEVVKRHATGTPTLVVGCDARYGSSEFATAACRVASAAGVR VLALPQANPTPLTSFAVRHFGADVGVMVTASHNPAPDNGYKVYLGGSVVTGDGQGVQIVP PFDAEIAEAIKATPPADQVPMNDDLIEAVDPRDEYVACASALASGEASAREDLRIVLTAM HGVGAAITSRVLAEAGFSNVSLVAAQTDPDPDFPTVPFPNPEEAGALDMAIEQAREEGAD LIIAVDPDADRCALAVPDPTSETGWSPLSGDQIGSLLGEFLAARGMTGSLANSIVSSRLL SRIARAHGLEHHTTLTGFKWIARAPGLGFGYEEAIGFCPDPGNVRDKDGIATSVVAASLV AALKAQGRSVWDELERLARLHGLHVSSPLTFRVEQIEQIASGMARLRAQPPSVLAGSPVV EVSDLSQGYRGLPPTDGVLVLTEAGDRVIARPSGTEPKLKCYLEVILPVAEGEPLPCEQA RERLDAIKGAFAEIIGL >gi|292821092|gb|ACYT02000028.1| GENE 17 16144 - 16797 799 217 aa, chain - ## HITS:1 COG:L63310 KEGG:ns NR:ns ## COG: L63310 COG0274 # Protein_GI_number: 15673422 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Lactococcus lactis # 10 215 7 214 220 172 51.0 6e-43 MNKRDVAAMIDHTILKPEATQADVARIVEEGAAAGTFSVCVSPSMLPLDVPEGLQVACVV GFPSGAVKPEVKAFEAALAVADGADEIDMVINIELVKDGRLADLEGEIAAVRRVVPSPRV LKVIIEAAALTDDEIVAACRASMAAGADFVKTSTGFHPAGGASTHAVALMRATVGEALGV KASGGIRDAETALAMIEAGASRLGVSATNAILAGLED >gi|292821092|gb|ACYT02000028.1| GENE 18 16818 - 17525 1069 235 aa, chain - ## HITS:1 COG:SA0131 KEGG:ns NR:ns ## COG: SA0131 COG0813 # Protein_GI_number: 15925840 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 1 232 1 234 235 303 59.0 2e-82 MRSTPHINPTAPIAPTILLPGDPLRAKFIAETYLEDAQQFNAVRNMLGYTGTYRGTPVSV MGSGMGIPSISLYAHELIHEFGCTRLVRVGTCGALQPDVNLYDVVVAQAACSNSAFLDQY QIPGSYAPIGSFRLIDDVVRRAREADVPIHVGNILSSDTFYNANPTFNEAWQRMGVLAVE MESAGLYATAAHAGVEAVGIFTVSDSLVTGEATDAQARQTSFTTMMELALPLAQL >gi|292821092|gb|ACYT02000028.1| GENE 19 17638 - 18621 656 327 aa, chain - ## HITS:1 COG:BS_deoR KEGG:ns NR:ns ## COG: BS_deoR COG2390 # Protein_GI_number: 16080994 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Bacillus subtilis # 1 309 1 310 313 233 40.0 4e-61 MERRDEQAIEAVKLYYQQGLSQAEVATRMGLSRPTVAKLLAHGRERGFVTIEIHDPREDA SEIALRLEQRFGLACARVAHGTGATEGEAIEQVGRVGADVVTQLVSDGMSVGISWGRTMS ALAAHLTRAPRVGVRVVQLKGGASFSERATHDYEIMRSFCEAFGAEPRYLPLPVIFQDMA MLSIVRRDRAIERILEEGRGVDVAVFTVGSLGCEALSLNLGQLEDDEVEALLRDAVGDAC SRFFTREGGVALASVDSRTVGITLDELRSRPVRVLVAGGRVKAEALDTALHMGLATHLVV DQDLALALLERPRGATPRGVRDRTPSG >gi|292821092|gb|ACYT02000028.1| GENE 20 18658 - 19944 1644 428 aa, chain - ## HITS:1 COG:MT3415 KEGG:ns NR:ns ## COG: MT3415 COG0213 # Protein_GI_number: 15842906 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Mycobacterium tuberculosis CDC1551 # 4 427 6 426 427 431 60.0 1e-120 MALFDAVDIIRVKRDGGVLTPDQIDWTIDAYTKGVIKDEQMAALAMAIFLRGMDRGEIAR WTDAMIRSGARMDFSGIGKPTADKHSTGGVGDKITLPLAPLVACFGVAVPQLSGRGLGHT GGTLDKLEAIPGWRAQLSNDEIMTQLGQGCGAVICAAGSGLAPADKKLYALRDITSTVES IALIASSIMSKKIAEGTGALVLDVKVGSGAFMKDLDAARELARTMVDLGRDAGVATRALL TDMSVPLGRKIGNALEVEESVEVLAGGGPADVIELTCELARNMLDLAGVRDADVEAALAD GRAMDRWRAMIREQGGDPDAPLPRAAHTHQVLAEADGTVVGMDALSVGVASWRLGAGRAV KEDPVQAGAGIEIHAKPGECVAAGQPLLTLHTDDEWRIERALESLSGAIEIADGVTPEPR SVVLETVS >gi|292821092|gb|ACYT02000028.1| GENE 21 19931 - 20386 434 151 aa, chain - ## HITS:1 COG:ML2174 KEGG:ns NR:ns ## COG: ML2174 COG0295 # Protein_GI_number: 15828164 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Mycobacterium leprae # 5 129 3 127 134 145 53.0 3e-35 MDPTEIDWDALLAEAIDVMKHAYCPYSNFPVGAAGLTADGWLVSGCNVENAGYGVTLCAE CGMVSDLIRSGGGALVAVVAVNGNEEPVAPCGRCRQLIYEHGGPSCLVLMPDGVAPMTEV LPGAFGPHDLSSVAQAAPASSEEKEGHDGSL >gi|292821092|gb|ACYT02000028.1| GENE 22 20395 - 21675 1734 426 aa, chain - ## HITS:1 COG:alr5368 KEGG:ns NR:ns ## COG: alr5368 COG1079 # Protein_GI_number: 17232860 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Nostoc sp. PCC 7120 # 128 424 11 304 312 203 39.0 6e-52 MSTSESGMVTQVEAKPSWKLPGIYVAACVLLVVFAATARGDMTLRLNDKSQSYSIPDIVT AGAPIVWVLAAASIAITLWTVAATLRRITQPEWARVGGMVFVGLSTILGFLFYAGSGSSG VVTLTSTLVSTVAISTPLIFGSLSGVISERVGVVNIAIEGDLLVGAFAGVMAASYFQTPY AGLVAAPLAGAFLGSLLALFSVKYGVDQIIVGVVLNVLALGLTTFFYGTIMKDAPGSLNT NQFSLSDIKIPVLSEIPIVGPVLFNQSILVYLMYAAVIALAFFLFRSRWGLRLRACGEHP RAADTVGINVGRTRTLNTILGSSFAGLGGAFFTIGSGLAFTDNISAGNGYIALAAMILGK WNPLGAMGAAVMFGFAQALARMLPNIEPAIPADLVSMIPYVVTIVAVAGFVGKSRAPAAE NIPYVK >gi|292821092|gb|ACYT02000028.1| GENE 23 21662 - 22801 1579 379 aa, chain - ## HITS:1 COG:BS_yufP KEGG:ns NR:ns ## COG: BS_yufP COG4603 # Protein_GI_number: 16080208 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Bacillus subtilis # 18 357 6 338 348 183 39.0 6e-46 MSARTSNGLGIATRVFGSQWFVSVLAVLIAFAIGAILIALSGASVVDAYYAMFRGSIVDP NAANVVRMIKPLTDSLFYSIPLIISGLGLALGFRAGLFNIGGKGQIIVGALAAVWVGFAV SLPPVLHTLVALLVAVIAGGLYGGIAGVLKAKTGANEVIVTIMLNSIATLGLGYTLTQKA WQVPGTNQPVTPKVAESAALARLLPAPFKLHVGFLVALVALVAFWWLIERSTLGFQIRAV GANAAAARTAGISVERITAITMVLSGAFLGLAGANEALGTIGYVSRDVAGSIGFDAITVA LLGRNKTWGTFGAGLLFGAFKAGGYTMQAKGVPIDMILILQSVIVLLIAAPALVRWLFRL PDVRALAANTRKGNADEHK >gi|292821092|gb|ACYT02000028.1| GENE 24 22798 - 24363 1791 521 aa, chain - ## HITS:1 COG:lin1426 KEGG:ns NR:ns ## COG: lin1426 COG3845 # Protein_GI_number: 16800494 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Listeria innocua # 3 502 5 505 513 449 49.0 1e-126 MKLELRGITKRFGPLIANDSIDLTIEEGHIHALLGENGAGKSTLMNVLYGMHAPDEGQIL IDGEPVTFKGPGDAVAAGIGMVHQHFMLIPVFTVAESIALGFEPTGPAGIISRERARQTV REVSARFGFDLDPDALIEDLPVGAQQRVEIVKALSRQAKVLILDEPTAVLTPQETDELMT IMRQLADAGTSIVFITHKLREVRAVADEITVIRRGRVVGHASPSDSEASLATQMVGREVL MRVEKDPARPAGGGLAFEDVSLLGSGGAPLLDHVSFDVRQGEILAVAGVQGNGQTELAEV ILGLRTPDSGVIRLEGADITRARPRESLDAGVGFIPEDRSTDGIIASFSIADNLVLDQFR SSSFSAAGSLKRGAIARNAREKETEYDIRLTSIEDPVSSLSGGNQQKVVVAREMSRDLTL LVANQPTRGVDVGSIEFIHRRIVDVRDQGCAVLLISSELDEVVSLADRIAVMYRGRIVGI VPADTGRDVLGLMMAGVPLDEAVADSSGSAQESGAPRQEEQ >gi|292821092|gb|ACYT02000028.1| GENE 25 24456 - 25550 1854 364 aa, chain - ## HITS:1 COG:CAC0702 KEGG:ns NR:ns ## COG: CAC0702 COG1744 # Protein_GI_number: 15893990 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Clostridium acetobutylicum # 36 357 34 341 357 134 28.0 3e-31 MKHLTKLLAAAGVATLALAGCGGGGGTATSQSGGAKDATSFKACAVSDAGGWDDKSFNES AYEGLKASQTSLGIQINTAESNSDADFNPNVESMVSDGCNLIIGVGFNLEKAVHTSADEN KDVHYALIDSSFNDGNNNTVTLDNARPLLFNTAEAAYLAGYVAAGMTKTGKVATFGGIQI PSVTVFMDGFADGVAAYNKAKGTNVQLLGWDKATQNGSFTQSFDDQTLGKEQAQQFISQG ADIIMPVAGPVGLGAAAAAKADGNTWIIGVDSDWYEANPDYSSIVLTSVMKEIGASVEQA IQDSVNGKFSSTPYVGTLANGGVSIAPFHDFDDKVSAELKADLTKLTDDIKSGKLVIESQ NAPK >gi|292821092|gb|ACYT02000028.1| GENE 26 25705 - 27984 2597 759 aa, chain - ## HITS:1 COG:Cgl0328 KEGG:ns NR:ns ## COG: Cgl0328 COG0737 # Protein_GI_number: 19551578 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Corynebacterium glutamicum # 24 664 20 631 694 289 35.0 2e-77 MRRPWTRLALASAAALTLASLPAAALAAPPGADAPITLDLYNLTDVHGHIQQVAKKGTVR EAGLPAMNCYLKKARQANPNSSFTLLGDNIGASPYISGALKDNPTIAALNTMNPLASTIG NHELDMGQAVFKQRVDGSNPGEFVQATFPYLGANIEGMGTYGDGTPYLGDYKLWTSPSGM KVAFIGAIAQDVPYKLSPGTTAGLTFTDPIKRINDLAAELKGSGKADVVIAMLDDDVKNN YPKVGKDVDGLMGGDTHVPYEFDHVNSHERFDSANPLLAGIASGSYTDNLGLIRLTIDPV TRQVTSADSILIPAAEVAQCGSDPDTQAIVDQAESDSKEAGKRVVATGYTEAFRRGVFTT PEGATDPGSNRGIESSLGDLVADSLRETILTPDGKSVDIGMIMAGGLRADLVPNEDGTIT YAQTYEVMPFSDELGYVTLKGSDVKDVLEQQWKTDLNSQNSRPMLKLGLSSNVRYTYDPA KPYGQRITSVTINGEPLKADATYTVGSVSFLLEGGDSFEALTRGGAATTNGNLDRDSFNA YLGAHSGGRARSVQAEGGLSPREAKSSIGLTLPTEAVADGSTVTIPLRGLSFSEGPSITS KVRVSAGGAQAVAEVDNSLVDAHASDAASVITTDGAGQASVDVTVVGACEGKAAGEVVNV PVTVATDFATVVEAGDGLTIPVTCAGDSAAQPSPTPDAGGDATPSAPTPSASPSPSAKRG GLARTGAYAEALLGAAAIAAIGGAGVLARRRANRYQSEN >gi|292821092|gb|ACYT02000028.1| GENE 27 28053 - 30419 2144 788 aa, chain - ## HITS:1 COG:Cgl2538_1 KEGG:ns NR:ns ## COG: Cgl2538_1 COG2374 # Protein_GI_number: 19553788 # Func_class: R General function prediction only # Function: Predicted extracellular nuclease # Organism: Corynebacterium glutamicum # 59 701 193 816 816 385 43.0 1e-106 MRYGTRTLAVFGALALSAAGLVPASWAVDAHRSDSAQSGQVTQSGGPGVSQADAVQPQSA AAQPVQPTQPAETSLPEGSAQSAESSAGLVDTAIPDIQAVGGGDDSAMVGATVTTVGVVT AAYPANESGLGATIDGYTIQTPGSGGTWEPGRTRSDGLFVYAGKKGEIPAPGTCVRVTGT VGEFPATSAKGNPQSLTQLAVTSVSVVQGCQEPTPIPATRVPTSDEAEALESMLLAPQGT WTITDNYQTNQYGTLTLTPGESPLRSATDVVAPGQAARDYEAANAARAIALDDGTNTNLL KGAATEVAYAYLANGSPARVGYHVSFTKPVVLEPRHGSLVFQPTSMVAGHPDRSPVTITG ERPSPPTVGGDTRVATFNVLNYFSDLGVDESGCSGYPDRTGAFVTAKKCKVRGAFSREAF ANQEAKIVSAINALGADVVALEEIENPVAVGVGTDRDATLARLVEALNKAAGDGTWAYVP SPPSVPQGEDVIRIAFIYKPATIAPVGPSLIHDDPAFTGLARQPLAQEFARVTGQRAAPA TFVVIGNHFKSKGSVPEGAPPGNVDNGDGQGNANAIRVAQATSLASFAARFADKPTLLVG DFNSYSQEDPIKALEASGWARVSGAGEASYVYAGRSGSLDHVFSNAAAKPLLSGVTSWAV NAQESIAFEYSRAGMNAHLTIEADNPYRSSDHNPEIIGLTLLRADDTAPSPTAPETPAPS ETPSPAPRPGTAQMDPVFSHGAPPRATRPQRGLPHTGSDTDRAIGLGIILAAAGGGLILL SRRTRRRG >gi|292821092|gb|ACYT02000028.1| GENE 28 30634 - 30930 256 98 aa, chain - ## HITS:1 COG:alr0051 KEGG:ns NR:ns ## COG: alr0051 COG0516 # Protein_GI_number: 17227547 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Nostoc sp. PCC 7120 # 1 94 275 368 387 110 54.0 5e-25 ACGADAVMLGAAIARAEEAPGRGWHWGSEATHPDMPRGQRVHVGTTGTLEQILYGPSTRA DSSLNFVGALKRTMASTGYSEVKDLQRAQVVVSPYSAS Prediction of potential genes in microbial genomes Time: Tue May 17 06:25:58 2011 Seq name: gi|292821002|gb|ACYT02000029.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.7, whole genome shotgun sequence Length of sequence - 88526 bp Number of predicted genes - 81, with homology - 81 Number of transcription units - 34, operones - 13 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 803 1075 ## COG0516 IMP dehydrogenase/GMP reductase 2 2 Tu 1 . + CDS 884 - 1636 1113 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 1649 - 1687 10.1 3 3 Tu 1 . - CDS 1880 - 2290 88 ## gi|293190190|ref|ZP_06608686.1| conserved hypothetical protein - Prom 2343 - 2402 2.1 - Term 2370 - 2406 -0.2 4 4 Tu 1 . - CDS 2491 - 3180 1195 ## COG0176 Transaldolase 5 5 Tu 1 . - CDS 3286 - 4809 2046 ## COG0516 IMP dehydrogenase/GMP reductase 6 6 Tu 1 . - CDS 4910 - 6184 1275 ## COG2942 N-acyl-D-glucosamine 2-epimerase 7 7 Tu 1 . - CDS 6302 - 7312 704 ## Bcav_3056 transcriptional regulator, MerR family - Prom 7406 - 7465 1.8 + Prom 7408 - 7467 5.2 8 8 Tu 1 . + CDS 7515 - 7811 343 ## Krad_0737 transcription factor WhiB + Term 7829 - 7870 13.4 9 9 Tu 1 . + CDS 7902 - 8714 1047 ## COG1651 Protein-disulfide isomerase - Term 8748 - 8803 22.2 10 10 Tu 1 . - CDS 8824 - 9120 603 ## COG0234 Co-chaperonin GroES (HSP10) 11 11 Op 1 . + CDS 9352 - 10593 1250 ## COG0500 SAM-dependent methyltransferases 12 11 Op 2 . + CDS 10659 - 11828 1614 ## COG2170 Uncharacterized conserved protein + Term 11836 - 11890 14.6 + Prom 11837 - 11896 1.9 13 12 Op 1 3/0.000 + CDS 11975 - 14638 2568 ## COG2898 Uncharacterized conserved protein 14 12 Op 2 . + CDS 14635 - 16209 1303 ## COG0627 Predicted esterase 15 13 Op 1 . - CDS 16225 - 17280 641 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 16 13 Op 2 . - CDS 17360 - 17596 418 ## gi|293190205|ref|ZP_06608701.1| aromatic amino acid transport protein AroP - Prom 17622 - 17681 1.8 - Term 17732 - 17782 20.0 17 14 Op 1 36/0.000 - CDS 17800 - 18543 880 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 18 14 Op 2 . - CDS 18540 - 20519 3134 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 19 14 Op 3 . - CDS 20536 - 21342 1013 ## HMPREF0573_10283 succinate dehydrogenase subunit C (EC:1.3.99.1) 20 15 Op 1 20/0.000 - CDS 21481 - 21930 275 ## PROTEIN SUPPORTED gi|227982014|ref|ZP_04029271.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 21 15 Op 2 12/0.000 - CDS 21927 - 22622 845 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 22 15 Op 3 3/0.000 - CDS 22632 - 23204 743 ## COG0802 Predicted ATPase or kinase 23 15 Op 4 1/0.100 - CDS 23201 - 24469 1176 ## COG0787 Alanine racemase 24 15 Op 5 1/0.100 - CDS 24541 - 26322 1726 ## COG0063 Predicted sugar kinase - Term 26384 - 26432 17.3 25 16 Tu 1 . - CDS 26467 - 28389 2253 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 26 17 Tu 1 . + CDS 28470 - 29510 1337 ## COG1072 Panthothenate kinase - Term 29413 - 29448 0.2 27 18 Tu 1 . - CDS 29579 - 33277 5618 ## COG5263 FOG: Glucan-binding domain (YG repeat) - Prom 33336 - 33395 3.8 - Term 33387 - 33430 14.1 28 19 Op 1 38/0.000 - CDS 33437 - 34366 1497 ## COG0395 ABC-type sugar transport system, permease component 29 19 Op 2 35/0.000 - CDS 34363 - 35274 1343 ## COG1175 ABC-type sugar transport systems, permease components 30 19 Op 3 . - CDS 35381 - 36793 2348 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 36867 - 36926 2.6 31 20 Tu 1 . - CDS 36958 - 39843 2811 ## COG3250 Beta-galactosidase/beta-glucuronidase + Prom 39799 - 39858 2.9 32 21 Tu 1 . + CDS 39895 - 40980 1142 ## COG1609 Transcriptional regulators + Term 40989 - 41038 21.4 33 22 Op 1 . - CDS 41092 - 41994 1175 ## ckrop_1874 hypothetical protein 34 22 Op 2 . - CDS 42000 - 43475 2200 ## COG0477 Permeases of the major facilitator superfamily - Prom 43559 - 43618 4.5 + Prom 43597 - 43656 4.5 35 23 Tu 1 . + CDS 43739 - 45976 2522 ## COG4409 Neuraminidase (sialidase) - Term 46045 - 46105 19.9 36 24 Op 1 4/0.000 - CDS 46118 - 47461 1774 ## COG1109 Phosphomannomutase - Term 47587 - 47628 15.5 37 24 Op 2 59/0.000 - CDS 47652 - 48143 703 ## PROTEIN SUPPORTED gi|227494577|ref|ZP_03924893.1| ribosomal protein S9 38 24 Op 3 7/0.000 - CDS 48182 - 48625 593 ## PROTEIN SUPPORTED gi|227497214|ref|ZP_03927462.1| ribosomal protein L13 - Prom 48766 - 48825 1.9 39 24 Op 4 . - CDS 48829 - 49737 754 ## COG0101 Pseudouridylate synthase 40 24 Op 5 . - CDS 49734 - 50483 827 ## COG1940 Transcriptional regulator/sugar kinase - Term 50499 - 50538 9.8 41 25 Op 1 50/0.000 - CDS 50569 - 51138 494 ## PROTEIN SUPPORTED gi|68536847|ref|YP_251552.1| 50S ribosomal protein L17 42 25 Op 2 32/0.000 - CDS 51182 - 52177 1471 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 43 25 Op 3 48/0.000 - CDS 52302 - 52712 541 ## PROTEIN SUPPORTED gi|148273769|ref|YP_001223330.1| 30S ribosomal protein S11 44 25 Op 4 . - CDS 52774 - 53148 569 ## PROTEIN SUPPORTED gi|227494570|ref|ZP_03924886.1| ribosomal protein S13 45 26 Op 1 . - CDS 53297 - 53410 195 ## PROTEIN SUPPORTED gi|21223105|ref|NP_628884.1| 50S ribosomal protein L36 46 26 Op 2 9/0.000 - CDS 53451 - 53672 334 ## PROTEIN SUPPORTED gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 47 26 Op 3 12/0.000 - CDS 54130 - 55038 1144 ## COG0024 Methionine aminopeptidase 48 26 Op 4 28/0.000 - CDS 55042 - 55620 868 ## COG0563 Adenylate kinase and related kinases 49 26 Op 5 53/0.000 - CDS 55617 - 56909 906 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 - Prom 56955 - 57014 2.2 - Term 57113 - 57162 15.2 50 27 Op 1 . - CDS 57167 - 57631 612 ## PROTEIN SUPPORTED gi|227497200|ref|ZP_03927448.1| ribosomal protein L15 51 27 Op 2 . - CDS 57634 - 57819 182 ## PROTEIN SUPPORTED gi|227981973|ref|ZP_04029230.1| LSU ribosomal protein L30P 52 27 Op 3 56/0.000 - CDS 57819 - 58508 922 ## PROTEIN SUPPORTED gi|227494562|ref|ZP_03924878.1| 30S ribosomal protein S5 53 27 Op 4 46/0.000 - CDS 58537 - 58908 468 ## PROTEIN SUPPORTED gi|23466146|ref|NP_696749.1| 50S ribosomal protein L18 54 27 Op 5 55/0.000 - CDS 58908 - 59450 669 ## PROTEIN SUPPORTED gi|62424403|ref|ZP_00379549.1| COG0097: Ribosomal protein L6P/L9E 55 27 Op 6 50/0.000 - CDS 59466 - 59864 558 ## PROTEIN SUPPORTED gi|227494559|ref|ZP_03924875.1| ribosomal protein S8 56 27 Op 7 50/0.000 - CDS 59927 - 60112 312 ## PROTEIN SUPPORTED gi|227494558|ref|ZP_03924874.1| ribosomal protein S14 57 27 Op 8 48/0.000 - CDS 60116 - 60661 808 ## PROTEIN SUPPORTED gi|227494557|ref|ZP_03924873.1| ribosomal protein L5 58 27 Op 9 57/0.000 - CDS 60664 - 61095 498 ## PROTEIN SUPPORTED gi|227494556|ref|ZP_03924872.1| ribosomal protein L24 59 27 Op 10 50/0.000 - CDS 61099 - 61467 584 ## PROTEIN SUPPORTED gi|148273791|ref|YP_001223352.1| 50S ribosomal protein L14 60 27 Op 11 50/0.000 - CDS 61556 - 61822 362 ## PROTEIN SUPPORTED gi|84494777|ref|ZP_00993896.1| 30S ribosomal protein S17 61 27 Op 12 50/0.000 - CDS 61828 - 62061 288 ## PROTEIN SUPPORTED gi|227497189|ref|ZP_03927437.1| 50S ribosomal protein L29 62 27 Op 13 50/0.000 - CDS 62061 - 62480 657 ## PROTEIN SUPPORTED gi|227492438|ref|ZP_03922754.1| ribosomal protein L16 63 27 Op 14 61/0.000 - CDS 62486 - 63295 1072 ## PROTEIN SUPPORTED gi|227497187|ref|ZP_03927435.1| possible ribosomal protein S3 64 27 Op 15 59/0.000 - CDS 63297 - 63668 469 ## PROTEIN SUPPORTED gi|227494550|ref|ZP_03924866.1| ribosomal protein L22 65 27 Op 16 60/0.000 - CDS 63698 - 63979 442 ## PROTEIN SUPPORTED gi|227494549|ref|ZP_03924865.1| ribosomal protein S19 66 27 Op 17 61/0.000 - CDS 63996 - 64832 1312 ## PROTEIN SUPPORTED gi|227494548|ref|ZP_03924864.1| ribosomal protein L2 67 27 Op 18 61/0.000 - CDS 64855 - 65160 242 ## PROTEIN SUPPORTED gi|227978459|ref|ZP_04025724.1| LSU ribosomal protein L23P 68 27 Op 19 58/0.000 - CDS 65157 - 65801 778 ## PROTEIN SUPPORTED gi|227497182|ref|ZP_03927430.1| ribosomal protein L4 69 27 Op 20 40/0.000 - CDS 65804 - 66469 934 ## PROTEIN SUPPORTED gi|227494545|ref|ZP_03924861.1| ribosomal protein L3 70 27 Op 21 16/0.000 - CDS 66481 - 66789 508 ## PROTEIN SUPPORTED gi|227428357|ref|ZP_03911414.1| SSU ribosomal protein S10P - Term 67302 - 67341 12.1 71 28 Op 1 30/0.000 - CDS 67397 - 68584 1342 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 72 28 Op 2 51/0.000 - CDS 68731 - 70854 3393 ## COG0480 Translation elongation factors (GTPases) 73 28 Op 3 56/0.000 - CDS 70935 - 71405 719 ## PROTEIN SUPPORTED gi|227494541|ref|ZP_03924857.1| ribosomal protein S7 74 28 Op 4 . - CDS 71405 - 71779 590 ## PROTEIN SUPPORTED gi|227494540|ref|ZP_03924856.1| ribosomal protein S12 - Prom 72003 - 72062 2.3 - Term 72176 - 72217 13.2 75 29 Tu 1 . - CDS 72286 - 75237 4290 ## COG1472 Beta-glucosidase-related glycosidases 76 30 Tu 1 . + CDS 76423 - 76914 377 ## gi|293190268|ref|ZP_06608764.1| conserved hypothetical protein - Term 77344 - 77398 21.0 77 31 Op 1 58/0.000 - CDS 77418 - 81320 5646 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 78 31 Op 2 . - CDS 81336 - 84812 856 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 84938 - 84997 4.2 - TRNA 85065 - 85141 92.0 # Met CAT 0 0 79 32 Tu 1 . + CDS 85283 - 87025 2406 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 80 33 Tu 1 . - CDS 87098 - 87688 477 ## Bsph_2619 hypothetical protein 81 34 Tu 1 . - CDS 87849 - 88481 527 ## COG3001 Fructosamine-3-kinase Predicted protein(s) >gi|292821002|gb|ACYT02000029.1| GENE 1 2 - 803 1075 267 aa, chain - ## HITS:1 COG:slr1722 KEGG:ns NR:ns ## COG: slr1722 COG0516 # Protein_GI_number: 16330504 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Synechocystis # 5 266 3 264 387 234 48.0 2e-61 MSDEVEIGRGKRGRRAYTLDDIALVPSRRTRDPEDVNVGWQIDAYHVDIPLMAAPMDSVM SPETAIAFGRLGGIGVLDLDGLWTRYEDPTPILDRIAHLGEEESIATLQRVYSEPIKPSL ITARLKQLREAGVVVAGKLSPQRVQKYWRAVVDAGVDLFIIRGSTVSAEHVSSRREPLNL KRFIYELDVPVIVGGVCTDTAALHLMRTGAAGVLVGFGGGAAHSTRQSLGVHAPMATAIA DVAAARRDYMDESGGRYVHVIADGGIG >gi|292821002|gb|ACYT02000029.1| GENE 2 884 - 1636 1113 250 aa, chain + ## HITS:1 COG:Cgl1214 KEGG:ns NR:ns ## COG: Cgl1214 COG0847 # Protein_GI_number: 19552464 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Corynebacterium glutamicum # 9 238 20 230 237 143 40.0 3e-34 MSWIDDPWMGFDTETTGVRALKDRLVTAALVLRIDGASYRSGVSAPDQVATWLTDPGVEI PEQATAVHGITTEQARRDGRPIEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELR RHRLGSFEERLEGAPMLIVDPLVLDRKLDRFRKGKKTLTEMAPVYGAVASPDAHTAEVDV AMTLDVLAGMVDKYPQLASMSALELMDYQLQAHQDWAEDFEKYLREQGKDANIDREWPQI TPRGRGDDQE >gi|292821002|gb|ACYT02000029.1| GENE 3 1880 - 2290 88 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190190|ref|ZP_06608686.1| ## NR: gi|293190190|ref|ZP_06608686.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 39 136 1 98 98 186 100.0 3e-46 MPPNWCMTSRFEAQPIATMLVAEGVAVLALPTSSVAWGMLLERFERRRNWIGNNLLDRLI TYPELFFLSRTAFPVQNSNAYLKAVWISRFPASYAAGTLQAFLTNVARNSPTTTANLEMA SLELQRFGWCSKNDRG >gi|292821002|gb|ACYT02000029.1| GENE 4 2491 - 3180 1195 229 aa, chain - ## HITS:1 COG:SPy2048 KEGG:ns NR:ns ## COG: SPy2048 COG0176 # Protein_GI_number: 15675818 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Streptococcus pyogenes M1 GAS # 1 212 1 213 222 148 36.0 9e-36 MLILIDHANVDSIAKTLEYLPIDGVTTNPTILYREGKEPLEVLHAIKSVLPDGAQLHVQI VSQRADDMVAEARALRGEIGGNLFIKLPVTREGFAAIPRIVREGMQVTATGIHSSMQGFM AAKAGARYVAPYVNRMDNYGIDGVRVASEIHRTLRSYDLKADVLAASFKNSEQVLELVRQ GVGAITAAPDVLAALIKNPATDAAIADQNRDFGFLVGERRTWLDLIKEK >gi|292821002|gb|ACYT02000029.1| GENE 5 3286 - 4809 2046 507 aa, chain - ## HITS:1 COG:Cgl0587_3 KEGG:ns NR:ns ## COG: Cgl0587_3 COG0516 # Protein_GI_number: 19551837 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Corynebacterium glutamicum # 212 502 1 292 292 355 62.0 2e-97 MGELATHDPFGLTGLTYDDVLLLPELTDVVPSSVDTSSRLTKNTSLRIPLLSAAMDTVTE ARMAIAMARQGGIGILHRNLSIEEQAAQVRQVKRSESGMVEDPVTVGPDATIDELDSLCG HYRVSGLPVVNEDGTLLGIITNRDLRFVPQDEWATLHVRDCMTPRDQLVVGQVGISREHA KHLLAEHRVEKLPIVDDNDHLTGLITVKDFVKTEQYPNATKDSRGRLVVGAAVGYWGDTW ERATALAEAGVDVLVVDTANGGAQLALDMIRRIKADPTFEGIDIIGGNVATTEGAQALID AGVDAVKVGVGPGSICTTRVVAGVGVPQITAIHLAAKACGPAGVPLIADGGLQYSGDIGK ALVAGADTVMLGSLLAGCEESPGEVVFTNGKQFKRYRGMGSLGAMSSRGRKSYSKDRYFQ ADVTSDDKIVPEGIEGQVPYTGSLAQVIYQLVGGLHQTMFYLGASTISQVKANGRFVRIT SAGLRESHPHDVQMTTEAPNYHSSSAR >gi|292821002|gb|ACYT02000029.1| GENE 6 4910 - 6184 1275 424 aa, chain - ## HITS:1 COG:ZyihS KEGG:ns NR:ns ## COG: ZyihS COG2942 # Protein_GI_number: 15804466 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Escherichia coli O157:H7 EDL933 # 5 412 12 405 413 143 28.0 6e-34 MNAPWNNEDLRRAFDADFGALVAFASRSKARVGFAFLRADGQVDLGRPLDARISARMTHV FALAQMRGIEGAVHLVDHGLAALAGPLRAPNGSWYAEVVPTSENSATPVPRAVLSQRAQS AMIGAAAAAAMVGHEEARGLLADLEADQDQRWWDACAGAVREEVDAATGARSPLRRLSTN LDTAQAYLAAWEATGERVWFDRARSILRLVGEIAARCAFALPDLYDEEWRPLPASCDQAP VELIRPGDTLPGLGFKAARLIGQTYAILTHMGEKPGPWMIDTATALYDRALADGWTTEGV GGIVYTLDPTGSVAAPQRMHWVVCEAASAARVLAEVVDSSRAEDLAVDYARAIAWADSHA RAGMGRWIHEVAPDGSVSMLVWEGRPDALTAARMLARGAAPIHLTVTGATAARYASQASQ SASS >gi|292821002|gb|ACYT02000029.1| GENE 7 6302 - 7312 704 336 aa, chain - ## HITS:1 COG:no KEGG:Bcav_3056 NR:ns ## KEGG: Bcav_3056 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: B.cavernae # Pathway: not_defined # 39 324 20 305 344 103 33.0 8e-21 MWVSYPFLWRARCEHARIRAGYGQGPEGADMPRAILAQSAHADRSRTMSSVSDELGVSPS TLRTWERRYGLGPAQREAGERRRYQPEDVDRLRAMIHHVRAGMSAAEAAKRALAESTLLP RRGPANAAQLRSVALSDDYQRLEEVIEAAVASHGLVHTWSRFVEPTLKSLRSAPGGEPIG SAPALMLVNAFQRVCRSVYQSRPARSLVGGDRVAIISDSLHETAAQVIGVALAWYGCDVR MLSSENYGGVSTTERFREYVRGGVPALTVVLGCGPECAQTVANLVARYGVPTIMVGADAP EILSPQVQRVRTISACVEEALALLAPQADLELVGRS >gi|292821002|gb|ACYT02000029.1| GENE 8 7515 - 7811 343 98 aa, chain + ## HITS:1 COG:no KEGG:Krad_0737 NR:ns ## KEGG: Krad_0737 # Name: not_defined # Def: transcription factor WhiB # Organism: K.radiotolerans # Pathway: not_defined # 1 95 1 94 100 113 57.0 2e-24 MTDVSRLPGPMIDAWEWQYEAACRDLDTELFFHPEGERGSTRRRRAANAKAICATCPVIE QCRSYALAAQEPYGIWGGMTEEERREEIRSSGRGRRVS >gi|292821002|gb|ACYT02000029.1| GENE 9 7902 - 8714 1047 270 aa, chain + ## HITS:1 COG:Cgl0018 KEGG:ns NR:ns ## COG: Cgl0018 COG1651 # Protein_GI_number: 19551268 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Corynebacterium glutamicum # 96 255 82 240 254 84 32.0 2e-16 MTSNDTKTSQKKAEDTSTNLYKTLFFVTAPITAALAGACVWMGVQLPSTSPASQATPAAT PTAAAQIPQNTETAAPSQTNPNNLEIMKSFVRHQENDTQAKGDINAPVTMVLFSDFACPY CTKYAQDIDPALADLVEDGTLRVEWYDLAQITETSPLAAQAGIAAGEQGKFWEFHDVVYA ASDPTGHPQYSEQALVDFAAKAGVPDLDKFRETMLSDHTATTVKAAKERAHQAGITGTPA MFINKAYVSGYRDAAYIRNTILDQAAQSAS >gi|292821002|gb|ACYT02000029.1| GENE 10 8824 - 9120 603 98 aa, chain - ## HITS:1 COG:Cgl0581 KEGG:ns NR:ns ## COG: Cgl0581 COG0234 # Protein_GI_number: 19551831 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Corynebacterium glutamicum # 2 98 8 104 104 129 68.0 1e-30 MSISIKPLEDRIVIRQVEAEQTTASGLVIPDTAKEKPQEGEVIAVGPGRVDDNGNRIPVD VKVGDVVIYSRYGGTEVKYDGQEFQILSSRDVLAVVER >gi|292821002|gb|ACYT02000029.1| GENE 11 9352 - 10593 1250 413 aa, chain + ## HITS:1 COG:Cgl1200 KEGG:ns NR:ns ## COG: Cgl1200 COG0500 # Protein_GI_number: 19552450 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Corynebacterium glutamicum # 56 406 53 381 387 116 30.0 8e-26 MSALTPILSSPGWELLESLQAKQATNPIPLPELGSALRASGLDADLVVAVLTQLALRQAA RSKFGPFASHMVFTRDGLEQATRLVVAARHAQRFKDCGATRVADLGCGIGSDAMAIAGLG MNVLAVDIDPDTAGAAAANLRAFEGSEVRLGDVADLDMDELASEGVDAIFADPARRTGAS RGSARITDPQQWSPPLSLALGWASTIERVGIKVAPGIAYERIPSSWHAQWVSVGGDLVEA SLWSPALSPEGRGRSCLLLDEAGAAHSLSTPEGYAPNAPAARVEVAPLGAMVAEPDSAVI RSGLLGRLADEVGAGIVSDKIAYLTGDELPDCPFYDRFEVLAVTNLRAKAISAELRTRGA GSVEIKKRGADINPDNLRKSLKLGGGNEQLTVIATRVNGRHRAIICRRLAKNL >gi|292821002|gb|ACYT02000029.1| GENE 12 10659 - 11828 1614 389 aa, chain + ## HITS:1 COG:Rv0433 KEGG:ns NR:ns ## COG: Rv0433 COG2170 # Protein_GI_number: 15607574 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis H37Rv # 3 373 10 374 376 340 47.0 2e-93 MSLPFGSSQRSTIGVEWELQLVDRDSHDLRQSADAIIDRATTDGKLDPGVHREMLLNTIE VVSKPRSTVAECMADLMDCVDYLTPLASDLRIDLATAGTHPFARPGRQRVTDSERYTQLV ERTAYWGHQMLLYGVHVHVGVEDRAKILPIQAALTAHLGHLQAISASSPFWAGEDTGYAS NRAMVFQQLPTAGIPRQFATWEDLEAYTDDMIRTGVIEGFDEVRWDIRPSPTFGTIENRV YDAATNATEVATFAAFTHVLVEHFSRLYDAGEPLPSLPDWFVAENKWRSARYGMDATLII SRDGTTENARDGIARLKEELAPVATDLNCTREFAGLETILTIGASYERQRAVAAAARPGQ GLDAVVDLMRAEMSAGRPLALAEFATLNV >gi|292821002|gb|ACYT02000029.1| GENE 13 11975 - 14638 2568 887 aa, chain + ## HITS:1 COG:Cgl0941 KEGG:ns NR:ns ## COG: Cgl0941 COG2898 # Protein_GI_number: 19552191 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 290 826 266 784 804 264 33.0 5e-70 MVQEATQSPESEGAPSALVRIASPVGATLQTVWLLLSSLAHLTIRWLSRCPATAVLTVAL TIVSATYWVWRDQFTALEADPSSPHWWSVLSSVGAVPGNFIATAVLGIVTMIIAGGAAER HLGTRAWVAAAASGQVVGVAATWLTLPLLTRVFSTWGQTIDAGSLWGTSLILVALVGAAA QSLASHWRWRARFLLIGILILSAAILGSAISYARVWSLLAGMVAARLAGVRGARSDSGND ITIGRQLASVAALCWACAAALTVVSSAPEGPLAQMRWSLGPAWWLEGRTGVITTLLCLAP ITLQLIFAYGLRKGRRAAYFGTLILQLILGLSTVAATGVALAQGADENGMARPELVTTAS LLLVPVILNAALCIITWWVRRSFTIHAEPSTTSTLLRRWLLLMVGCAGAVLVLGFLTSDS FVPLEALNSGDDLTVTGNATPLQILHDYTLALLPTATASIFEPSLVPMTLFAEAPVLWVP LVAWGGTLAIILSALLARPRIPLSSPLESLTPLLRAHGAGTLGWMQTWEGNQVWVSPTGE AGVAYRGSGGVALTVTDLAYEPGKASEAIALFSAFASDSGLTPALYSVHEELAQAAREEG WTIMQVAEESLLDLPELAFKGKAYQDVRTAMNHATREGVEAVWTTWEECPAGWRDQITVI SDTWSDDKALPEMGFTLGGVPELAVPETRILVAIDEESTIHAVTSWLPIYRDGTVVGLTL DVMRRRTTGWRPAIEFLIGKAALAAQEEGLEILSLSGAPLSRSADDTSAFGPLTDALAAI MEPLYGFTSLHAFKRKFKPRTQSLYLAVPDPASLATVGLAISHAYVPHVSPAQTLTLVAS VAGGLAKLAAKGVGDLRSTRATSRESTSAADALAATASSDGSGKEHR >gi|292821002|gb|ACYT02000029.1| GENE 14 14635 - 16209 1303 524 aa, chain + ## HITS:1 COG:Cgl0942 KEGG:ns NR:ns ## COG: Cgl0942 COG0627 # Protein_GI_number: 19552192 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Corynebacterium glutamicum # 95 367 133 417 426 64 25.0 4e-10 MSALGNIPLTSLKTLAVVAVLAILSLLAGASLLARSAPSRCPGRARRWLGRAVILLVPTF LIASAGALVFNRSLGLVKTSGDLAKLALLSVVGTTAQSGGEADVNAQSAAVSELDATFTK TEDGMLQTTWTGPSSGITQPVFVITPRDYSPNDGKTYAVIELLHGYPGGPDGTMQGAQVQ EALNNAIDEGIIPPTIVVGPSLNVDEEAHDCADIEGRPAVYTWVSHDVPAMIRHNFPNTT SHRDAWMIGGFSAGAYCAIWTALRTPETYGAAASLSGYDTQIEGQMTNQGEQYLADNTLS TMLANRTPDGMRIYAMAAGDDAVGGAYTALKMASAVKEPDSVTTDVPPSGGHAGPLWREH IPTMLAWWGSSDRVSRAVGATSTAATAQSSEASASIVPVTTVTHEVRPTAPNGYLTLALL IAGVLVSLALTWLIAPRWQLRRHEGDTDDHADHRHRARHRAQRSGLFTSVPRPALRALGY LARLMSLGAATVSAALLVGIAANMAGGFYTSWSSIAQSFMDGLR >gi|292821002|gb|ACYT02000029.1| GENE 15 16225 - 17280 641 351 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 2 341 515 857 860 251 42 9e-66 MSEPLVLGIESTCDETGVGLVRGTQLLVDRTATSMDEYARYGGIIPEIASRAHLESFLPT LDAALDEAGVALADVDAIAVAAGPGLVGSLTVGICAAKALASSLGKPLYGVNHVIGHLAV DKLADGPLPEHFIGLVVSGGHSNILEIRNIATDVVELGGTLDDAAGEAFDKVGRLLDLPY PGGPHVDRLSQQGDCEAIRFPRGLAAGKDKERHKYDFSFSGLKTAVARYIEGATARGEVV SKENVCAAFSEAVNDSLTAKAVRAALDTGCDTIVVGGGFSANSRLRALLTERAETAGVQV RMPPLRFCTDNGAQIAAIGSELVAAGLPPSDWDFSPDSGLELTTTYLAPRA >gi|292821002|gb|ACYT02000029.1| GENE 16 17360 - 17596 418 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190205|ref|ZP_06608701.1| ## NR: gi|293190205|ref|ZP_06608701.1| aromatic amino acid transport protein AroP [Actinomyces odontolyticus F0309] # 1 78 1 78 78 125 100.0 6e-28 MQFDETGPNTHTRRYWVSATVGITAMIAFAILSILLLLGMLFGSPQIKPIADSLFPWSLL VFAVAGVSMFIANARSRD >gi|292821002|gb|ACYT02000029.1| GENE 17 17800 - 18543 880 247 aa, chain - ## HITS:1 COG:Cgl0368 KEGG:ns NR:ns ## COG: Cgl0368 COG0479 # Protein_GI_number: 19551618 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Corynebacterium glutamicum # 1 246 1 246 249 254 49.0 1e-67 MNLTLRIWRQNGPEDKGAIHEYQVKGISEESSFLEMLDVLNEELFARGEEPIAFDSDCRE GICGQCGIVINGIAHGPEVTTTCQLHMRSFNDGDVITIEPWRASGFPIIKDLVVNRSALD RIIQAGGYISVNTGAAPDAHATPVPKQDADRAFEAAACIGCGACVAACPNASAMLFTSAK VTHLGLLPQGKPENYKRVVNMLNQMDEEGFGSCSNIGECAEVCPKQIPLDVIANLNRQLG KAAFKGV >gi|292821002|gb|ACYT02000029.1| GENE 18 18540 - 20519 3134 659 aa, chain - ## HITS:1 COG:Cgl0367 KEGG:ns NR:ns ## COG: Cgl0367 COG1053 # Protein_GI_number: 19551617 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Corynebacterium glutamicum # 16 659 27 673 673 622 51.0 1e-178 MTDTLIHGLYREGEKIADTKAPHDVPIAQRWEQRKFSAALVNPANRRKLRVIIVGSGLAG GAAAASLGEMGYNVDCFFYQDSARRAHSIAAQGGINAAKNYRNDNDSVYRLFYDTVKGGD YRAREDNVYRLAEVSANIIDQCVAQGVPFAREYGGLLDNRSFGGVQVSRTFYARGQTGQQ LLIGAYQALERQVAAGTVKEYARHEMVELIVDEGKARGIIARDMSTGKLETFVADAVVLA TGGYGNVFFLSTNAMGCNATAIWRAYRKGAYFGNPCFTQIHPTCIPQHGDQQSKLTLMSE SLRNDGRIWVPKRAEDCEKDPRQIPEEDRDYYLERIYPSFGNLVPRDIASRQAKNMCDEG RGVGPKINGVARGVYLDFSDAINRMGLAAVSAKYGNLFDMYERITGDNPYEVPMRIYPAV HYTMGGLWVDYDLESNLPGLYVAGEANFSDHGANRLGASALMQGLSDGYFVLPNTINDYL AHCFHLPKLDENSPSVKEALESAQGRIDTLMSINGTRSVDSFHKELGKIMWEYCGMERTE EGLKKAIGMIRELRADYWKNVRVPGKSIGELNQSLEKAGRVADFMELGELMCIDALHREE SCGGHFRAESQTPEGEALRHDDKFLYVAAWEYAGEGEPPILHKEDLIYNDIELKQRSYK >gi|292821002|gb|ACYT02000029.1| GENE 19 20536 - 21342 1013 268 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10283 NR:ns ## KEGG: HMPREF0573_10283 # Name: sdhC # Def: succinate dehydrogenase subunit C (EC:1.3.99.1) # Organism: M.curtisii # Pathway: Citrate cycle (TCA cycle) [PATH:mcu00020]; Oxidative phosphorylation [PATH:mcu00190]; Butanoate metabolism [PATH:mcu00650]; Metabolic pathways [PATH:mcu01100]; Biosynthesis of secondary metabolites [PATH:mcu01110] # 39 266 7 256 260 177 42.0 3e-43 MAENDTVLRSLAGGLVPWSYEAEEKRRYAHGMATQNVATKKRRAWTTSVFIKQLMAVSGF VFVFFLLFHSYGNLKMFLGAEVYNDYAHWLHEEAFVPIFPHGGFIWVFRAAMVLMLIIHL WAAAYTWKRSRRARSTRYVVKKSVSDSYAARTMRMSGVLILLILIFHIAHFTTVSLPAKV ANFGADVTTPYARMVASFQSPVLVILYAVFVGCACIHVSHGFWSMFQSLGWVRNATRKPL VLLSGLVGLVIFVMFMAPPVAIVTGLIH >gi|292821002|gb|ACYT02000029.1| GENE 20 21481 - 21930 275 149 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227982014|ref|ZP_04029271.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Thermomonospora curvata DSM 43183] # 1 145 1 147 162 110 41 3e-23 MNATLRVAGPGDLELFAALEAEVFAEDPWTPYMIAEELSSPASRYWIATDESGDVAGYGG VKVGGDQADVMTIGVRAHARGRGIGSTILDALLEWSREAGVREVFLDVRPSNKGAIGLYE SRGFVEIGRRPRYFRNPVEEAVEMRAPLI >gi|292821002|gb|ACYT02000029.1| GENE 21 21927 - 22622 845 231 aa, chain - ## HITS:1 COG:Cgl0576 KEGG:ns NR:ns ## COG: Cgl0576 COG1214 # Protein_GI_number: 19551826 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Corynebacterium glutamicum # 1 222 1 206 225 79 34.0 7e-15 MREIALDTQAATTVAIIDDGCVLGRAQNDSGRHHAESITPLVREALAAAGLPAQLADAGI DRVLVGTGPAPFTGLRAGLVSARVLASVAGVPAYGVSALDVIARQGLDRLPPDTRVYAIA DARRRELYWGSYVAAGPDDVTLEGRLEVGDVSALLGAMRTAPGLVVAGAPIPAHSADALA RVDLGPQVSLDPAVMSRIVATRLSRGEDDRLRTDPLYLRRPDIQGQPTARL >gi|292821002|gb|ACYT02000029.1| GENE 22 22632 - 23204 743 190 aa, chain - ## HITS:1 COG:Cgl0573 KEGG:ns NR:ns ## COG: Cgl0573 COG0802 # Protein_GI_number: 19551823 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Corynebacterium glutamicum # 15 136 16 145 165 102 52.0 6e-22 MTQPIASYEVSTRDADQTRAFGEDLGRILAAGDLLMLSGGLGAGKTTLTQGIGVGMGVRG RVASPTFIVARVHPSLSGGPDLIHADAYRITDLNDLETLDLDSSLDEAVTVVEWGEGKTE AMSDERLSIEVRRASGGEAAHDGDVIDLENMDDGTRVIVLHAHGHRWDGVLDGVVAAHGG TRIDEADTDE >gi|292821002|gb|ACYT02000029.1| GENE 23 23201 - 24469 1176 422 aa, chain - ## HITS:1 COG:MT3532 KEGG:ns NR:ns ## COG: MT3532 COG0787 # Protein_GI_number: 15843019 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Mycobacterium tuberculosis CDC1551 # 15 415 36 407 408 241 40.0 3e-63 MISTDERVEGRDYPSSAAVDLAAIRHNLGVLRAAAPGALQLATVKANAYGHGLLPVARAA LDGGADWLGVAQLAEAFTLRRGLDEAGVARADAPILAWISTSSSDFAAAIEADIDLSVSW TWVLADICAAAREAGRPARVHVKIDTGMSRAGSTLADLPALASALRMAADDGLVDVVGAW SHMSRADDPSEAGNASTASHVRIFEEGLAILADAGVTPRIRHLSATSGILWHREAHYDMV RAGIGLYGLSPDPEVATSEQLGLTPALELRAPLTSVKVIEEGTPASYGGTWVAPTRRWIG LVPLGYGDGILRAASNQARVVVHTASGPFNAPLIGRVCMDQFMVDLGPAEGSPGTPTARS GQAPAIPGDIATLFGSGISGEALADDWAQAAGTINYEIVTHLGAHIPRIYRDGADATFGS NS >gi|292821002|gb|ACYT02000029.1| GENE 24 24541 - 26322 1726 593 aa, chain - ## HITS:1 COG:Rv3433c_2 KEGG:ns NR:ns ## COG: Rv3433c_2 COG0063 # Protein_GI_number: 15610569 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Mycobacterium tuberculosis H37Rv # 284 534 35 246 289 89 35.0 2e-17 MFTIDRAALSFADARELETKCVDQAVSEGDPDRYMLDVAGEVAAAVVRHADLPVSWNGED SEPGVDAEERGDAEGVDWIASRVTAFVGGGDNGGDALYACAILARGGIGATAYLLKKRCH RRALAAAQEAGVRIIDLGGQSLRSIENTPAWSDVFLAHAWIDGIVGTGSHGPLTGALAES VELLNRLSAIKPRPVIAIDVPSGLTDDDGTITGPILRATHTLAVGTYKRAQVLPPAVEFT GDISLVTMDRDSNGTGRTQGDDGMIGADDLYVVDEAFSAREVVPVPAFSDDKYVRGVVGL VAGSDTYPGAGLLATRGALAAGVGMVRLNSTRRVQDLVLADQPGVVTVGGRIQSALIGPG LDEDRREDALELAQFCGQSGMPLVIDAWALDLVPELATSIKLDATVLTPHYGEAARLLGR LGTPVTRAEIAASPLRYARALHEATGCHVILKGPVTIVYSFEYVDTEVQEAFQRALNAAE AWPDVDALPQGRLVRSYTPTVGQVTTSWAGVAGNGDVLAGFLAGVLARPVDEGDAVAGPD GQPQRVTPGRLTAAVSVHGRAAQVAAEAAGGVAPIQASDIAAAIGQVLSQPTR >gi|292821002|gb|ACYT02000029.1| GENE 25 26467 - 28389 2253 640 aa, chain - ## HITS:1 COG:Cgl2219 KEGG:ns NR:ns ## COG: Cgl2219 COG0449 # Protein_GI_number: 19553469 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Corynebacterium glutamicum # 4 640 3 625 625 712 57.0 0 MGAMCGIVGHIACKASQRSREVVLGGLARLEYRGYDSAGIALASPDRLDVRRALGKLINL SEDLDAQPPADAFAGIGHTRWATHGRPTVANAHPHSSPDGRFSLVHNGIIENADALRAAL IADGETFASETDTEVVVHLLARAYDRADPASFQGAVAGLTGADEEVARRLVVALRAVTEQ LHGTFTLLVLSTQSPNVIVAARRSSPLVIGLGEGENFLGSDVLAFVEHTNRAVEVDQDEV VVVSATGVTVIDPAGNPVEREAYEVDFSSDRATKNGWPTFMEKEIHEQPDAVGATLADRI DSHGHLALDEVRIPQHVLRSVNKVIMIGCGTASYAGQVARYAIEHWCRIPVEVELSSEFR YRDPVVDEKTLVVAISQSGETMDTIQAIRHAREQGAKVVAIVNTPGSTISRESDAVILTH AGPEIAVASTKAFTAQVTACYILGLYLAQVRGNKYADEIADYMDKLGAIPDAISRVLDSG ESVRQFARTMQDATSVIYLGRHVGFPVALEGALKLKEICYIHAEGFAAGELKHGPIALVD EGQPVIVIVPTPRRPELHGKVLANIAEVRARGARTIIIAEEGDSSVDEFAEVVFRVPAVP TLYAPLLTVVPLQIFACELAAVKGLDVDQPRNLAKSVTVE >gi|292821002|gb|ACYT02000029.1| GENE 26 28470 - 29510 1337 346 aa, chain + ## HITS:1 COG:VC0320 KEGG:ns NR:ns ## COG: VC0320 COG1072 # Protein_GI_number: 15640347 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Vibrio cholerae # 39 345 70 375 375 328 52.0 1e-89 MGHNGIVSITESPSPIPFPASSSVSSDEQNPAPARNAPNPYARFDRREWDRLADRTPLPL TQEDIDRIASLGDPIDMTEVDTIYRPLSALLQLYIDGRRRTAAERHAFLGEPEGHSTPFV IGIAGSVAVGKSTVARLLQLLLSRWDSTPRVDLVTTDGFLYPNRILQERSLIARKGFPES YDRSALISFLASVKAGNPHAKAPVYSHVTYDIVPDAYVDVDRPDILIVEGLNVLQPPRSA PGSVSVAVSDYFDFSIYVDADEKQIEQWYVDRFLKLRATAFSREDSYFKTYASLTDAEAA STAHVVWNAINLPNLRENIRPTRERATLIFTKGHDHRVESLSIRKE >gi|292821002|gb|ACYT02000029.1| GENE 27 29579 - 33277 5618 1232 aa, chain - ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 1005 1229 467 704 744 207 46.0 1e-52 MGTRPIIGALGAPILAATMLGLAPAAAVAATETPYHPTVLWATSEEKVGESAPNGTIAAL VDDDTTRTDATKTFWTTKWKGGLDTYPHALAVQNPTPGTQVCGLGLTPRPTYDSTLGNDQ FPGEYRVFAFDEDPGNPAAEASFADWKTNVAAGTWEGGTEVKHGSDLQFGNKEQYVTFPA TTKRVFALTGLRSLAPGKKDMALSDIKLLPCDADGNAITSYGNEDTGGNHEAARPVVPHP DAPEQGSGASDLVVDFVIDQLPYGEPGKPVDFAPGTHTYTATGYYHAKTVSARIRAVDGA TVTINGVTPDADGRVSNLDLTTGLNVITATVAKDGKEATYVVNITKVDTDFRGNVMIPAT AQANGGTEADNAALTDLDPTTTWTSDPLVRAHEWSSSVTGIELHLGEARYVHRINGWGTP ILPAGVQGWHGGNSVAIAVQEADGGEWKTIVTHGSLTRDARGLWYWDFNSYHLAKNIRIW MNDETEPQTPQNIATAVTFNDVEVWGLPAGKTPVAPVVDNSMYERYSGFNPGDGKWGVNR AQALALQYGVMMPAWVPSEGYGRGGFDANERDLTGGAFPMFYDLPMFNTAMMESLGKGAP WALAKAPTGKNSMCNAGEPRDFMNEYMKPYASTLVDIQYGDEGGFNRGESECFKNWFSWS KENIPGAVVHANSWDDPSWYRDANLSYYVENAKPDLLSWDKYYWGANGGPAPSNVVMNLL GTNTWKKQREYGLKGLTGDGSSPILYGQYLDYNWDANVSASEKSIVPSLGLATGQKWFGL FRMEYNGYDRSSIIDHDGAPTRSFYEFSNIFGNVTYIGNYTKAMNSTFVAYKPGQYAARG AIPSLSGYKYGDFASGDEAKAANESVGLVDMSVTNVGSVNDGLPGDVVVGYFEQLKGLET AKSAEIFGDSTTAPKGFMVVNALTGQTRYPSYLLDPRTDNGSLAETAQDITLTVKKPAAN AHLMLVNPADKTTQEVELGEGETSQVVLHAVGGGDSRFLYWVTIEDPTPTPDPTPTPDPQ PTPDPTPAPEPTVDPTPAPTPDPAPQPRTGQWKSGYFGWWYSYSDGTYAANETLVIDGQT YRFDARGYMKTGWVYDGGHWYYHGSSGAQQTGWIMDRGNWYYLDPSNGVMATGWAQIDGS WFYMSPSGAMRTGWVKDGGAWYYLSPSGSMATGWQHLDGSWYHLGANGAMTTGWLKDGPS WFYLHGNGSMATGWELIGWTWYHFAPSGAWIE >gi|292821002|gb|ACYT02000029.1| GENE 28 33437 - 34366 1497 309 aa, chain - ## HITS:1 COG:all4824 KEGG:ns NR:ns ## COG: all4824 COG0395 # Protein_GI_number: 17232316 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Nostoc sp. PCC 7120 # 45 308 16 278 279 162 35.0 8e-40 MSTATSSAATFGERFAQWRKERRLERQGRNVASRQMRGGALIARYALLVVVALILVGPLV LPLMAAFKAPGESVFGQGATMLPQQWSLDSFYVLFERTNILLSIKNSAILATLTVSSNVI LSCIGGYMLSRRGWTGRNVMYFVVLSAMIFPFESIMLSLFKMMVQLDLYNTLPGVWMVAM IGPFQILMMRAAFMGIPDEIEDAALIDGAGELRRFWSIFLPQVRGTLTVVGLTSFIGAWS DFIFPLLMLPDPNKQTLMLTLTAIQNSPQGVTYQLVLAGAVVAMIPVVLVFAFSQKFFFR GIEDGGLKF >gi|292821002|gb|ACYT02000029.1| GENE 29 34363 - 35274 1343 303 aa, chain - ## HITS:1 COG:slr1202 KEGG:ns NR:ns ## COG: slr1202 COG1175 # Protein_GI_number: 16329975 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Synechocystis # 17 296 9 290 298 158 34.0 1e-38 MPIRKSAQTRSLNGAARFRPGWVPWLWVTLPVLAVISFYIYPFITTVYVSFTKTKPMGRI GRFVGIDNFTAVLSDPEFWQSLTNSLIYAVCVVPLMVLLPLLLALLVKSHVPGIGFFRAL YYLPAISSLVVISLAWRYLLDQRGPINNMLASWGLDPVPFLSNQWMILFCAMIITLWQGL PYYMILYLSALANVDKSLYEAAELDGAGPIRRFLTVTVPGVKVMMFLVATLTTIGCLKIF TEVYLLGGSASPTKTLTMYIRDRIVDPTFGSLGQGDAASVCLFLITFGFIIASQSLQRKA EDS >gi|292821002|gb|ACYT02000029.1| GENE 30 35381 - 36793 2348 470 aa, chain - ## HITS:1 COG:all1027 KEGG:ns NR:ns ## COG: all1027 COG1653 # Protein_GI_number: 17228522 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 39 464 14 432 432 136 28.0 7e-32 MLKKKMAAGVVALAMFSTLGLAACNPGGSSSDSSSGGSAAAGSIPQPDVACDIPEGNLDD SKIDTSKVEGEITFQTQGLQNDFGDFFKAKIKEFEDANPGVKINWTDQGGGAEFDQTVTA QASNCKMADVINVPSSTILALSKSNLLMDYDVKAPGIGDKFVKSIWDSTALGANDHHTAL PWYFGPYITTYNKEVFKRAGLDENMPPKTMDELFEDAAKVGADGQGDYGIYGSPEWYMIA QLHGMGVNLLNADKTAFNFADNEAAINYVTKLSELYASGAIPKDSLTGEPDPGKAYTDGN LAFGTPNASFLKSVKKNNETVYQNTGVGPFPTNPGIKPVFEGQYIGVSVTTQNAPLAMKF AEWITNAENEYAWTHDGGAIIFPAATDALDKLVANPPEIADDPVFKAAYEEAAKAAKDAE AYTDVFYATGAVKDALIENVNKAIRGEVDPKTALKTAQDQMNEKLKALGD >gi|292821002|gb|ACYT02000029.1| GENE 31 36958 - 39843 2811 961 aa, chain - ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 10 614 14 580 1087 344 36.0 5e-94 MLVLSLTIGVSTTTSERHTDVISILPSYAPGAGTLVPPRAHLADDCGVLTLDGMWSFAYH STDPAPFVNVEQPWDEPAPVGDASEIDVPSHWVLRGEGAWGHPAYTNVDFPFPVDPPFPP DDNPVGDYRRTFELPADWQGGHIRLRFDGVESQATVWVNGTWIGMARGSRLAHEFDVTEA VHSGVNTITVRVHQFSPGSYLEDQDQWWLPGIFRSVSLRRLAPGAIEDLWVDTDYEAGVG YVTIEARVLGAQEAHLSGHLSIDGLWSFACSLERGEDGRYRSGRIEVGSVRPWSAQDPAL YEARVSVQGSERLDAGERCLRIGFRRVYIEGGVLKANGEPLTLNGVNRHEVRAAEGRVFD EAWAREDLALMKSMGINAIRTSHYPPHPRVLDLADEIGLWVMLEGDIETHGFEGVGEWID NPSDDPCWADAYMDRTVRAFERDKNHPSIMSWSLGNESGTGANLVACARWVHERTGSRAI VHYEGDHALEYTDIYSRMYPTLEEVAAVLDESDPHAEVAVPTHVAARVDDAARERIRRAP YIMCEYLHAMGTGPGNAAAYAAQMGHRRHAGGFVWEWRDHALWRTLPDGRRALSYGGDFG EEVHDGSFVCDGLIDALSRPYAGTWSWVQAMAPDAPALAKAIESSRGHGPDEARLRALLG APVAVVRTDDDVAAPYALDARGRLARIGTMPVSVDLSVFRAPTDNDRGRGPVDYWGIDED DLGPLGVGRGEHGTSHAARWEQARLHLLRRRLVSIEEEGTCQRVTERWAPPVAQFGVTLT WEYRPVLLGETPALSVSVRVAPYGAWPERVPRLGVRIEMPGSQWEASWLGDTLIGYSDMR VSGARGYGHAPVRELWDVSVCPQEGGQRLDLEALRLHGEAGDVLVVPTSSLGWSASPWSE RELAEASHWEDLPDSERTFLWLDAFQDGIGTRSCGPDSRPEFAGCMRDADLTFVIAQVGG D >gi|292821002|gb|ACYT02000029.1| GENE 32 39895 - 40980 1142 361 aa, chain + ## HITS:1 COG:ECs4695 KEGG:ns NR:ns ## COG: ECs4695 COG1609 # Protein_GI_number: 15833949 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 4 318 2 308 330 82 27.0 1e-15 MERATRADVARAAGVAPSTVSLVLNGRGRDVKIAPATIDRVKQAARELNYIPNAAARSLR RGKSHLIALLMAELPDDPFVPVVHTVLTTAMIDIQRRGYLLLPLFQSGDGASDAEVIRGV LGDTQLAGIIRETTSAEAFTSRLLANLGIPVVAMSMIEANPTGSESSLIRIDEGAGVRDV LSDCALVDPSTGTGSGRAVFLAGPNTNHARQNPIARMFGTRFTMYSLPDWEPTTAYQAAL RLLDEDPSISLIALADDSQAPGVFQATADLDLSVPGDLSILGFGNQDHRSASALGLTTVE WPLKDMTEAAVSSIINVIEGRSPMTDIHPQASIDEEAPDGTPIATIPTRPVWRSSVARRT P >gi|292821002|gb|ACYT02000029.1| GENE 33 41092 - 41994 1175 300 aa, chain - ## HITS:1 COG:no KEGG:ckrop_1874 NR:ns ## KEGG: ckrop_1874 # Name: not_defined # Def: hypothetical protein # Organism: C.kroppenstedtii # Pathway: not_defined # 5 300 22 317 323 316 55.0 8e-85 MTLPFVIGAYASHPAPELEADYYRLLADQPWVSGVEIPYPGQLATQGDVLAGHLAAHWDF NTITAIPGTMQNVWKNENFGLASPDEAGRAAALDFTRALRDDLAALCERAGRQLVARVQL HSAPTRLAQVDAFKRSLAEVATWDWCGATLVIEHCDKYIPEQNPEKGFLSLESEIDIVSE AGIGIHLNWGRSAVEGRSADTAYEHVLEAGKRGVLDGIIFSGAGPEETQYGYSWIDGHLP AQADEPTSLMDEAEIARCARAAVEGGANYLGAKVCVPKDASLEQRLAMLTNIYRACGIGE >gi|292821002|gb|ACYT02000029.1| GENE 34 42000 - 43475 2200 491 aa, chain - ## HITS:1 COG:STM3338 KEGG:ns NR:ns ## COG: STM3338 COG0477 # Protein_GI_number: 16766633 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 13 486 9 475 496 445 50.0 1e-125 MSTSPAQALTKKPWYQYLTKEDRKAFFAAWIGVLLDGYDFVLISFALPAIKEAFSLTLVQ SASLISAAFISRWIGGLVLGAIGDRYGRKPAMVLSIFMFAFGSIACALAPNFWILFILRL VIGFAMAGEYSASAAYVIESWPKHMRNKASGFLLSGYAFGVIAAAQVDKYFVTWVDSVHP GWGWRALFLTGIVPIVVAIYMRRTLPEAADWSEAKEKGDGEKNDMLAVLFGGQRKILNYA VVVIAFVGLMVIFTQQVGGIVAVSLIGVVCAIVFIYLIIQFDSNRWIIGIAIMLTIFASF MYTWPIQGLLPTYLHGVGMDQKVVANVVSFAGLGNAVGYIIAGFAGDKFGMRRWYAISLL LSQIIVFPLFTQDGKYVALVAGLLFFQQMFGQGVSGLLPKWVSSYFPVDKRAAGLGFCYN VGALGGAVGPVLGAAIADQLGLGMALAILSFGFAAVVMVSIGANIPRLLQRMVGPEYVRP EDGNDEIIAEG >gi|292821002|gb|ACYT02000029.1| GENE 35 43739 - 45976 2522 745 aa, chain + ## HITS:1 COG:PM1000 KEGG:ns NR:ns ## COG: PM1000 COG4409 # Protein_GI_number: 15602865 # Func_class: G Carbohydrate transport and metabolism # Function: Neuraminidase (sialidase) # Organism: Pasteurella multocida # 309 741 48 558 1080 186 28.0 1e-46 MSIDAGHPGISWTLQFRARIDGALIELHSTADTGWHLFIRSSALFLEGSTNAMSFALDME DTASVTDGTWHSLAITATSAGSKIFLDGYQCFSTTADLSPAASGPEATLELTPGAGIDIR SFTEHDGVLSPAEILALSPAPTPLIEFAAARLSDYDVAELSELTAGTIFARYRVRGPGQH GTILAAGGGGTEQLNLSVTEEGIEYKVLGRRGEWRTFTAHGHWDQGHWHDVVVRVGHGAV QIYVDGYLEAHLPGQAFFAAVDSLDEVVIGQDTSGSRLFGEVRNAALYSSVLNDSQIKKL SSIAPVDTQCLFDAGFHDSISYRIPSLITLESGVVVAGADQRETIANDSPNSINFTVRRS FDGGHTWGDLQTVLTYPGHGAKGASVIDSCVVQDRRNGRLVILIDHFPGGIGQPNAEAGL GVDERGRYILHDANGATYTWNQDGSVTDADGNTTAFTVSERGDVTVTEGGQESSGGNVFL ADGVDPHQTLLTARTCFLQMIYSDDDGETWSGPFNLNQDVKEEWMSFCGTSPGTGVQLRS GRLVIPIYYNGDHKRHFSASVVYSDDGGTTWKRGKSPNDGRIFEGREIDSRTLDTEAAAT HEATLIERADGSLLMLMRNQHPSGKVAATVSTDGGETWSDVFFAEEITEIFCQPNAVPWP TEDCPERVVFANASQMRPYRGRGVLRLSEDGGRTWIASRTFNPAHYVYQCMTILPDGALG LLWEREMQGLYFSRIPLEWIEAAKI >gi|292821002|gb|ACYT02000029.1| GENE 36 46118 - 47461 1774 447 aa, chain - ## HITS:1 COG:CAC0484 KEGG:ns NR:ns ## COG: CAC0484 COG1109 # Protein_GI_number: 15893775 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 1 443 4 445 448 419 51.0 1e-117 MFGTDGVRGLANVDITADLALQLGEAAARQFGGSLRADRSKPRAIIGRDTRISGEFLDHA LAAGLASAGMDVTRIGVVTTPTVAHLTATEDTVDLGVMISASHNPMPDNGIKFFAHGGYK LADSVEDQIEALVNTEWDRPTGDAVGEINADHAWAKDSYIAHLVEAIGTDLRGMKIAIDC ANGAASELGPAVFRELGADITVINASPDGRNINLNAGSTHPESLQAAVVEAGCDFGVAYD GDADRCLAVDHEGNLIDGDKIMGSLAVNALERGTLAKDTLVVTVMSNLGLLIAMREAGIK TVQTGVGDRYVLEEMLASGYSLGGEQSGHIIARDHATTGDGILSSLLISRMVKESGRSLA DLTSFIQRLPQTLINVGGVDRAGASTNEAVAEAVAAAEARLGETGRVLLRPSGTEPLVRV MVEAATQEEADSVAASLADVVKENLAL >gi|292821002|gb|ACYT02000029.1| GENE 37 47652 - 48143 703 163 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494577|ref|ZP_03924893.1| ribosomal protein S9 [Actinomyces coleocanis DSM 15436] # 1 163 1 163 163 275 84 6e-73 MAETIVSAELDEEVVPSSYTSETESAPAGAGQSITAPGAGLGRRKEAVARVRLVPGSGKW TINGRTLEDYFPNKLHQQLVKSPFVLLDIDGRFDVIARINGGGVSGQAGALRLGVSRALN EIDRDANRPALKKAGFLTRDARATERKKAGLKKARKASQFSKR >gi|292821002|gb|ACYT02000029.1| GENE 38 48182 - 48625 593 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227497214|ref|ZP_03927462.1| ribosomal protein L13 [Actinomyces urogenitalis DSM 15434] # 1 147 1 147 147 233 76 3e-60 MRTYSPKPGDADKKWYVIDATDVVLGRLAAQTAALLRGKHKPTFAPHMDMGDYVIIINAD KVALTGKKLDQKMAYRHSGRPGGLTATAYRDLLAATPERAVEKAVKGMLPHNSLGRAQFK KLHVYAGPEHPHAGQSPVPYELTQVAQ >gi|292821002|gb|ACYT02000029.1| GENE 39 48829 - 49737 754 302 aa, chain - ## HITS:1 COG:Cgl0551 KEGG:ns NR:ns ## COG: Cgl0551 COG0101 # Protein_GI_number: 19551801 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Corynebacterium glutamicum # 2 295 4 281 294 189 42.0 7e-48 MSTRRLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHAR HQVCHADISEAAWARLSPRGGESDEQAVASAIVRRLNKILSGRYGERARGRDLAVARGTC DVRIYSAAVVDPSFDARFSALGRSYAYRVSDRPEPLGRWDRLWVEEPLDEAAMNEAGAAL LGEHDFLGFCRPREGATTIRTLRTLLAERDAEGTLVFRVEADAFCHSMVRSLVGALLLVG SGARDVAYPVQILRARSRSEAAPIAPAHGLTLEGVEYPDPSQWRARAEQARARRDTCCGD DG >gi|292821002|gb|ACYT02000029.1| GENE 40 49734 - 50483 827 249 aa, chain - ## HITS:1 COG:all1371 KEGG:ns NR:ns ## COG: all1371 COG1940 # Protein_GI_number: 17228866 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Nostoc sp. PCC 7120 # 6 247 10 233 239 154 35.0 2e-37 MTREMTLAIDCGGGGIKGSVVDERGTMMAPPRRVPTPYPLPPELLVETAIGLARELPTAT RVTMGMPGMIRHGVVIATPHYITRDGPRSRVLPELVERWDHFDMGRAIEQALALPTKVLN DAEVAGAGAITGRGLEMIITLGTGLGNAVFDGGQLAPHVEVSQGPVRWGLTYDDYIGEHE RLRLGDVHWSRRVRRVVDGLRPMYMWDRLYLGGGNSKRITASNLRLMGDDVMVVPNDAGI IGGVRAWEL >gi|292821002|gb|ACYT02000029.1| GENE 41 50569 - 51138 494 189 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|68536847|ref|YP_251552.1| 50S ribosomal protein L17 [Corynebacterium jeikeium K411] # 1 189 1 182 182 194 59 1e-48 MPTPKKGARLGGSPAHQKLILSNLAAQLIEHRAITTTEAKAKALRPYVEKLITKAKRGDQ HARRTVMKKIPNKGIVAILFEELVPAMDSERAGGYTRLIRVGNRKGDNAPLMRIELVMEK VEKKAVVKAAEKTAAKAVADEAEKAAEAAAERAEEAREEGDLAKANEAEEVAAEAGKAAD AAEQVADEK >gi|292821002|gb|ACYT02000029.1| GENE 42 51182 - 52177 1471 331 aa, chain - ## HITS:1 COG:MT3564 KEGG:ns NR:ns ## COG: MT3564 COG0202 # Protein_GI_number: 15843052 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 323 1 322 347 441 72.0 1e-123 MLIAERPILTEEKVSDLRSRFTLEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVP HEFRTIEGVKEDVAEIILNIKQIVLSSENDEPVVMYLRKAGPGEVLAGDITPPAGVEIHN PDLHLATLNEKGKLEIELTVERGRGYVSAAQNKDPQAEISRIPIDSIYSPVVKVTYKVEA TRVQQRTDFDRLVIDVETKPAITPRDALASAGKTLVELFGLMRELNEEAEGIEVGPSTTD ATLAADLALPIENLNLQSRSYNALRRRGILTVGELVAHSEADLLDIRNFGTKSIEEIKES LAALGMTLKDSVMPSFGDSESAAIFSDDQSI >gi|292821002|gb|ACYT02000029.1| GENE 43 52302 - 52712 541 136 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148273769|ref|YP_001223330.1| 30S ribosomal protein S11 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] # 1 135 1 131 132 213 80 4e-54 MAAAKTSRSGGARKPRRKISKNVTNGHAYIKSTFNNTIVSLTDPTGAVVAWASSGQVGFK GSRKSTPFAAQLAAEAAARRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEIGSIQDV TPQAFNGTRPPKRRRG >gi|292821002|gb|ACYT02000029.1| GENE 44 52774 - 53148 569 124 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494570|ref|ZP_03924886.1| ribosomal protein S13 [Actinomyces coleocanis DSM 15436] # 1 122 1 122 122 223 91 2e-57 MARIAGVDLPREKRLEIALTYIYGVGRTRAAETLAATGVSPDTRVKDATEEELVKLRDYI EANFKVEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVHGQRTKTNARTRKGPKRTVAGK KKAK >gi|292821002|gb|ACYT02000029.1| GENE 45 53297 - 53410 195 37 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|21223105|ref|NP_628884.1| 50S ribosomal protein L36 [Streptomyces coelicolor A3(2)] # 1 37 1 37 37 79 94 5e-14 MKVKPSVKKICDKCKVIRRHGNVMVICDNPRHKQRQG >gi|292821002|gb|ACYT02000029.1| GENE 46 53451 - 53672 334 73 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15610598|ref|NP_217979.1| translation initiation factor IF-1 [Mycobacterium tuberculosis H37Rv] # 1 73 1 73 73 133 87 4e-30 MAKKDGVIEMEGTVVEALPNAMFRVELKNGHVVLGHIAGKMRQHYIRILPEDRVVVELSP YDLSRGRIVYRYK >gi|292821002|gb|ACYT02000029.1| GENE 47 54130 - 55038 1144 302 aa, chain - ## HITS:1 COG:BS_map KEGG:ns NR:ns ## COG: BS_map COG0024 # Protein_GI_number: 16077206 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Bacillus subtilis # 7 282 5 246 248 201 41.0 1e-51 MPRIELKSAQELRWMREAGLVVASIHEALRGAIRPGITTRELDEVSAQAIADEGATSNFK GYYGYPATVCISVNDVIVHGIPGDYELAPGDIVSFDCGAYVERGGRQWHGDAAFSVIVGE TFVSDADFAAGERATGAIAGVDENLLRERRQLDAVTRESLWAALAGLATGKRISAVGNAV ETVVAENALINGWEAGIIEEFVGHGIGTKMHMPPDVLNYNVRGIQARLKPGMVLAVEPML TRGDIAWQTDDDEWTVRTVDGRDAAHWEHSIAITEDGVSVLTARDGGVAGLAPYGVTPVS LD >gi|292821002|gb|ACYT02000029.1| GENE 48 55042 - 55620 868 192 aa, chain - ## HITS:1 COG:MT0757 KEGG:ns NR:ns ## COG: MT0757 COG0563 # Protein_GI_number: 15840140 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Mycobacterium tuberculosis CDC1551 # 4 186 3 179 181 179 53.0 4e-45 MTVVILLGPPGAGKGTQASRIAERLGIPAISTGDIFRANMAEGTEIGKQAQAYMDRGEFV PDSVTNAMVKARLAAPDAADGFLLDGYPRTVEQAHVLRDMLLDLGKSIDVVLEIQVDEDE VVERMLKRAQEQHRTDDTEPVIRHRLEVYHQQTLPVATYYVDQDLLEVVDGSGTIDEVTA RIFAILDSVAKN >gi|292821002|gb|ACYT02000029.1| GENE 49 55617 - 56909 906 430 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 3 430 15 438 447 353 42 2e-96 MLGAFAQAFRTPDLRRKLLFTLFIMAAFRLGSFIPTPGVDSQAVQRCMAQESEASLLDLV NLFSGGALLQLSIFALGIMPYITASIIIQLLRVVIPRFDDLHKEGQTGQAKLTQYTRYLT IFLGILQATTTISLARSGQLFQSCNHDIIKDRSVMTFIMMIIVMMAGTGVIMWLGELITE RGIGNGMSLLIFTSIAARLPEQLLSIGQAGKWGSVAAIVALLLLVAIAVVYVEQAQRRIP VQYAKRMIGRRQYGGTTTYIPLKINMSGVIPVIFASSILALPPMAAQFGSPDDKWVQWIS AHFTQGSSFYLTIYALMTLFFTFFYTAITFNPDEVADNMKKYGGFIPGYRAGRPTAEYLR YVINRITTAGALYLVIIALLPSLAIIPLQLSSSQMPFGGTTLLIIIGVGLQTVKEINTQL QQHHYEGFLK >gi|292821002|gb|ACYT02000029.1| GENE 50 57167 - 57631 612 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227497200|ref|ZP_03927448.1| ribosomal protein L15 [Actinomyces urogenitalis DSM 15434] # 1 154 1 157 157 240 75 2e-62 MADSTNKTQIVKLHHLRPAPGAKTAKTRVGRGEGSKGKTAGRGTKGTKARYQVAAGFEGG QMPIHMRLPKLRGFKNPFRVEYQVVNVGKLGELFPEGGKVTVEDLIAKHAVRDSAPVKVL GTGELSVKLEVEVDSWSSSAEAKITAAGGSISAR >gi|292821002|gb|ACYT02000029.1| GENE 51 57634 - 57819 182 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227981973|ref|ZP_04029230.1| LSU ribosomal protein L30P [Thermomonospora curvata DSM 43183] # 5 61 4 60 60 74 64 2e-12 MAKNIKITLVKSSAHAKQNMKDTLRTLGLRKIGQSVVREQTDVVLGAVRTVRHLVTAEEV D >gi|292821002|gb|ACYT02000029.1| GENE 52 57819 - 58508 922 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494562|ref|ZP_03924878.1| 30S ribosomal protein S5 [Actinomyces coleocanis DSM 15436] # 1 229 1 230 230 359 82 2e-98 MAAQQRDRNGSGAGENNDRRERRSGRGNDRDNRRNNENKNEYIERVVTINRVSKVVKGGR RFSFTALVVVGDGEGTVGVGYGKAKEVPQAISKGVEEAKKNFFRVPMIRRTITHVVQGRD TAGVVLLRPAAPGTGVIAGGPVRAVLEAAGVHDVLTKSLGSSNAINIVHATVDALKQLEQ PEAVAARRGLPLERVAPASMLRARAEGEAEKRAAAEAAEADKAAAGEAK >gi|292821002|gb|ACYT02000029.1| GENE 53 58537 - 58908 468 123 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466146|ref|NP_696749.1| 50S ribosomal protein L18 [Bifidobacterium longum NCC2705] # 1 123 1 123 123 184 76 1e-45 MAYSIKGKGKFVARKRRHLRLRKKINGTPERPRLVVTRSNRHMVAQVIDDTVGHTLVSAS DIETEVAGSEGTKTDKARKVGALIAERAKAAGISAVVFDRGGNKYTGRVAAVAEAAREGG LEL >gi|292821002|gb|ACYT02000029.1| GENE 54 58908 - 59450 669 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62424403|ref|ZP_00379549.1| COG0097: Ribosomal protein L6P/L9E [Brevibacterium linens BL2] # 1 180 1 178 178 262 72 5e-69 MSRIGKNPIAIPAGVDVTIDGQNVSVKGPKGTLSHVVAEPITAKIEDGQVVVERPNDERT SRSLHGLSRTLIANMIVGVTEGYKKDLEITGTGYRVVAKGKDLEFSLGFSHTITITPPEG IEFTIAPKSQTLFTVSGIDKQLVGETAARIRKLKKPEPYKGKGIHYVGETIRRKVGKAGK >gi|292821002|gb|ACYT02000029.1| GENE 55 59466 - 59864 558 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494559|ref|ZP_03924875.1| ribosomal protein S8 [Actinomyces coleocanis DSM 15436] # 1 132 1 132 132 219 84 4e-56 MTMTDPIADMLTRLRNATRAHHETVSMPYSKLKNAIANILVEEGYIASTSVEDARVGKTL TINLKYGAHREAAIQGLKRVSKPGLRVYAKSTNLPKVRGGLGVAILSTSSGLLTDRQAAE KGVGGEVLAYIW >gi|292821002|gb|ACYT02000029.1| GENE 56 59927 - 60112 312 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494558|ref|ZP_03924874.1| ribosomal protein S14 [Actinomyces coleocanis DSM 15436] # 1 61 1 61 61 124 95 1e-27 MAKTSLKVKAARKPKFGVRAYTRCNRCGRPHSVYRKFGLCRVCLRELAHRGELPGVTKSS W >gi|292821002|gb|ACYT02000029.1| GENE 57 60116 - 60661 808 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494557|ref|ZP_03924873.1| ribosomal protein L5 [Actinomyces coleocanis DSM 15436] # 1 181 1 181 181 315 86 4e-85 MAPRLKEKYVSEIREALRAEFKHENVMQVGGLTKIVVNMGVGEAARDSKALEGALRDLTA ITGQKPVTTRAKKSIAQFKLREGQAIGAHVTLRGDRMWEFLDRLLSTALPRIRDFRGLSP KQFDGHGNYTFGLTEQSMFHEIDQDSIDRVRGMDITVVTSATTDEEGRALLRHLGFPFKE D >gi|292821002|gb|ACYT02000029.1| GENE 58 60664 - 61095 498 143 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494556|ref|ZP_03924872.1| ribosomal protein L24 [Actinomyces coleocanis DSM 15436] # 1 143 1 146 148 196 69 3e-49 MAAKIRKNDLVEVVRGRTSDEKALAERNARRAEEGLEPLTPGDKGKQGRVIQVFPAEGKV LVEGINLKTRHVRQGQQGSAGGIETIEAPISLSKVALVDPETKKRVRAGFREDTVERGGR TRTVRVRVARGGAKRGVEQGKEI >gi|292821002|gb|ACYT02000029.1| GENE 59 61099 - 61467 584 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148273791|ref|YP_001223352.1| 50S ribosomal protein L14 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] # 1 122 1 122 122 229 92 4e-59 MIQQESRLKVADNTGAKEILTIRVLGGSGRRYAGIGDTIVATVKDAIPGGNVKKGEVVKA VIVRTRKETRRPDGSYIRFDENAAVIINNNGEPRGTRIFGPVGRELRDKKFMRIVSLAPE VI >gi|292821002|gb|ACYT02000029.1| GENE 60 61556 - 61822 362 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|84494777|ref|ZP_00993896.1| 30S ribosomal protein S17 [Janibacter sp. HTCC2649] # 1 88 10 97 97 144 79 2e-33 MAETTARNERKVRRGYVVSDKMDKTVVVQIEDRVKHALYGKVMRKNKKVKVHDEHNECGV GDLVLIMETRPLSATKRWRVVEILEKAK >gi|292821002|gb|ACYT02000029.1| GENE 61 61828 - 62061 288 77 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227497189|ref|ZP_03927437.1| 50S ribosomal protein L29 [Actinomyces urogenitalis DSM 15434] # 1 77 3 79 81 115 74 8e-25 MADKGLTTEQLDAMDNSQLSKELEKAKAELFNLRFAQAVGNLEDHGRMKTVRRDIARIYT IARERELGYRTAPSTEE >gi|292821002|gb|ACYT02000029.1| GENE 62 62061 - 62480 657 139 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227492438|ref|ZP_03922754.1| ribosomal protein L16 [Mobiluncus curtisii ATCC 43063] # 1 138 1 138 138 257 86 1e-67 MLIPRRTKYRKQHRPHRTGFASGGTELAFGDYGIQALEAAYITNRQIEAARIAVTRHIKR GGKVWINIFPDRPLTKKPAETRMGSGKGAPEWWVAPVKPGRVMFELAGVPEELAREALSR AQHKLPIKTRFVVREGGDI >gi|292821002|gb|ACYT02000029.1| GENE 63 62486 - 63295 1072 269 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227497187|ref|ZP_03927435.1| possible ribosomal protein S3 [Actinomyces urogenitalis DSM 15434] # 1 269 1 269 269 417 79 1e-115 MGQKVNPRGFRLGITTDHRSRWFSDSTTKGQRYADYVAEDVAIRKFLTDNLERAGIAEVS IERTRDRVRVDLHTARPGIVIGRRGAEADRLRVQLEKLTGKQVQLNILEVKNPDLEAQLV AQGIAEQLAARVSFRRAMRKGIQSAQRAGARGIRVQVSGRLGGAEMSRSEFYREGRVPLH TLRANIDYGFHEARTTFGRIGVKVWIYKGDITEREFARQQAEQAQRGGRRDGRRGPRRGG RPNQETAAQQAPREASASEATAPTTGSEA >gi|292821002|gb|ACYT02000029.1| GENE 64 63297 - 63668 469 123 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494550|ref|ZP_03924866.1| ribosomal protein L22 [Actinomyces coleocanis DSM 15436] # 1 121 1 121 122 185 76 8e-46 MEAKAQARFIRVTPQKSRRVVNEVRGKRVLEAADILRFAPQAVATDVRKVLLSAVANSKV KAENAGETFNEADLLVLEAYVDEGPTMKRIRPRAQGRAGRILKRTSHITIVVGTKEDKKK GDR >gi|292821002|gb|ACYT02000029.1| GENE 65 63698 - 63979 442 93 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494549|ref|ZP_03924865.1| ribosomal protein S19 [Actinomyces coleocanis DSM 15436] # 1 93 1 93 93 174 89 1e-42 MPRSLKKGPFVDDHLLKKVDAANESGSKNVIKTWSRRSVITPDFLGLTIAVHDGRKHVPV FVTESMVGHKLGEFAPTRTFRSHDKDDRKGRRR >gi|292821002|gb|ACYT02000029.1| GENE 66 63996 - 64832 1312 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494548|ref|ZP_03924864.1| ribosomal protein L2 [Actinomyces coleocanis DSM 15436] # 1 278 1 278 278 509 87 1e-143 MGIRKYKPTTPGRRFSSVSDFVEITRDTPEKSLLRPLHKTGGRNNNGRVTSRHRGGGHKR QYRVIDFRRHDKDGVPATVAHIEYDPNRTARIALLHYADGEKRYILAPTGLKQGDQIEAG VGADIKPGNSLQLRNIPLGTVVHAVELYPGGGAKIARSAGTSVQLVAKEGRFAQLRMPSG EIRNVEATCRATIGEVGNAEQSNINWGKAGRMRWKGKRPHVRGVVMNPVDHPHGGGEGRT SGGRHPVSPWGKPEGRTRRPKKASDRMIVRRRKTGKNR >gi|292821002|gb|ACYT02000029.1| GENE 67 64855 - 65160 242 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227978459|ref|ZP_04025724.1| LSU ribosomal protein L23P [Tsukamurella paurometabola DSM 20162] # 1 98 1 100 103 97 52 2e-19 MSTIEAGKNPRDIILKPVTTEKSLALMDLGKYTFEVDPRANKTEIKIALERIFGVKIGSI ATQNRKGKTYRTRNGIGKRKDVKRAIVTVREGTIDIFGDQA >gi|292821002|gb|ACYT02000029.1| GENE 68 65157 - 65801 778 214 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227497182|ref|ZP_03927430.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434] # 1 212 1 211 214 304 74 1e-81 MADDRNVDVIDIKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGEV AGGGKKPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDR ARADRIHVVTALFEGDKPSTKAALAALSAIVEDRQALVVLERGNELTALSLRNVPEVHVL WADQLNTYDVLDADDIVFTQAALESFLGTKEETK >gi|292821002|gb|ACYT02000029.1| GENE 69 65804 - 66469 934 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494545|ref|ZP_03924861.1| ribosomal protein L3 [Actinomyces coleocanis DSM 15436] # 1 221 1 221 221 364 80 1e-99 MTNKKQHAGAPIKALLGRKLGMTQVWDADGHLVPLTVVQVGTNVVTQVRTDEVDGYSAIQ LGFGEIDSRKVTKPLQGHFEKAGVAPRRHLVEVRTSEQDSFELGQELDATTFEAGEGVDV SGTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKGLRMAGRMGGNR RTVQNLTIQAVDAEKGLLLISGAIPGPKNGVVLVRSSVKGA >gi|292821002|gb|ACYT02000029.1| GENE 70 66481 - 66789 508 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227428357|ref|ZP_03911414.1| SSU ribosomal protein S10P [Xylanimonas cellulosilytica DSM 15894] # 1 102 1 102 102 200 98 2e-50 MAGQKIRIRLKSYDHEVIDSSARKIVDTVQRAGATVVGPVPLPTEKNVFVVIRSPHKYKD SREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL >gi|292821002|gb|ACYT02000029.1| GENE 71 67397 - 68584 1342 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 521 64 1e-147 MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPDLNEYTPFDQVDNAPEERD RGITINVSHVEYQTDKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMAQTRE HVLLARQVGVPTILIALNKADMVDDEEMLELVEEECRDLLESQDFDRDAPIIQVSALKAL EGDPEWVAKVEELMDAVDSYIPTPERDMDKPFLMPIEDVFTITGRGTVVTGRVERGKLPI NSEVEILGIREPQKTTVTGIEMFHKSMDEAWAGENCGLLLRGTKRDEVERGQVVAVPGSI TPHTDFEGQVYILKKEEGGRHNPFFSNYRPQFYFRTTDVTGVITLPEGTDMVMPGDTTEI SVQLIQPIAMEPGLGFAIREGGRTVGSGRVTKIIK >gi|292821002|gb|ACYT02000029.1| GENE 72 68731 - 70854 3393 707 aa, chain - ## HITS:1 COG:Cgl0488 KEGG:ns NR:ns ## COG: Cgl0488 COG0480 # Protein_GI_number: 19551738 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Corynebacterium glutamicum # 1 706 1 706 709 1013 72.0 0 MALEVLTDLNKVRNIGIMAHIDAGKTTVTERILFYTGINYKLGETHDGASTTDWMEQEKE RGITITSAAVTSFWNGNQINVIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSET VWRQADKYDVPRICFINKMDKMGADFYFSVGTIRDRLHATPIVMQIPMGAENDFVGNIDL LTMEALTYPAKDDKGNDTFGSIVERGPIPAEYQEKAEEYREALVEAAAEGSDELTEAYLE NGELSLEQIKEGIRLLTISSRAFPVYCGTALRNMGVQPVLDAVVDFLPSPLDIGDVRGFL PGSETEEETETRKPDENEPFSALAFKIAAHPFYGKLTFIRVYSGKVESGAQVLNSTKGKK ERIGKIFQMHSNKENPVDVAHAGHIYAVIGLKDTTTGDTLSAMDKPIVLESMTFPAPVIQ VAVEPKSKADQEKMGVAIQKLAEEDPTFTVELDAETGQTIIGGMGELHLDIIVDRMRREF KVEANVGNPMVAYRETIRKTVEKYEYTHKKQTGGSGQFARVIIALEPLPADSEEEYVFED KVTGGRVPREYIPSVDAGIKDAMQSGVLAGYPMVDIKATLLDGAYHEVDSSEMAFKVAGS MALKEAAKKANPVLLEPIMAVEVRTPEEYMGDVIGDLNSRRGQISSMDEQHGVRVVKAQV PLSEMFGYVGDLRSKTQGRAVYSMEFDSYAEVPRAVADEIVGKSRGN >gi|292821002|gb|ACYT02000029.1| GENE 73 70935 - 71405 719 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494541|ref|ZP_03924857.1| ribosomal protein S7 [Actinomyces coleocanis DSM 15436] # 1 156 1 156 156 281 89 8e-75 MPRKGPAPRRPLVDDPVYGSKVVTQLVNRVLLDGKKTVAERIVYGALETVRERTEQEPVS VLKRALENIRPALEVRSRRVGGATYQVPVEVRPARATTLALRWLVDFSRQRREKTMTERL ANEILDASNGLGAAVKRREDMHKMAESNRAFAHYRW >gi|292821002|gb|ACYT02000029.1| GENE 74 71405 - 71779 590 124 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494540|ref|ZP_03924856.1| ribosomal protein S12 [Actinomyces coleocanis DSM 15436] # 1 124 1 124 124 231 91 7e-60 MPTIQQLVRKGRVSKRAKVKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSG IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYRIVRGSLDTQGVRGRQQARSRYGAK KEKK >gi|292821002|gb|ACYT02000029.1| GENE 75 72286 - 75237 4290 983 aa, chain - ## HITS:1 COG:TM0025 KEGG:ns NR:ns ## COG: TM0025 COG1472 # Protein_GI_number: 15642800 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Thermotoga maritima # 642 880 5 261 721 164 37.0 9e-40 MLSINWSDVWKMVESIKVPLIVIGVVLALAIIVSLAVFKMGKPARKLTSSTAWVAALITV VVAVVSMMYGGFKTVLDLAAGTGALTDASKAQVEDLGNDISDEGMVLLKNQGGALPLAKG SAINVWGWGSTNPIYGGTGSGSLSKDNPTTSLLDGLHNAGFTTNDELTNLYTSYRAERPE VGMFKADWSLPEPTQDKYSDDLLSDATAFGDTAVVTIARSGGEGFDLPRDVNQEMADNPY FSYTNNSEDYTDFEDGQGYLELTRPEKDMIELAKKTSTKTIVVINAANVFQLGDLQDDPE IDAIVWAIPGGQVGFNALGRILDGEVNPSAKTPDTFPRVIKAGPAANNFGDFQYTNMTEF AQDDPFNKGTQTQPSFVNYNDSIYVGYRWYETAAVEGVIDYGNEVVYPFGYGLSYTTFSQ SMSDISVDEATGTMSADVTVTNTGQVAGKDIVQIYDNPPYTDGGIEKASANLLSYEKTKL LEPGESQTLTVTWNRDSLASYDSVNAKAYVLEAGDYKISARTNSHDVIDEKTYTVDATQT FNAADNTHDGDEVVATNQFDDAKGDVTYLSRAGRFANLAEATAAPTNFEMSEANKAKFLA TSNYDAAAADADSSATMPTTGAKNGLVLGDLAGLDYDDPEWDQLLDQLTVEEMNTLISKG GYGSPAISSIGKLRVSDVDGPASLNNNFTGVGSIGLPSAVSVAATFNKELARSFGDAIGT MAHDMQVSGWYAPATNTHRYAYAGRNFEYFSEDPVLAGSQVAEEIKGAQAKGVYAFLKHF ALNDQETNRTHMLATWTNEQAMREIYLRSFEIGVKDGGAHAIMSAFNYIGPEYAGANSAL LNNVLRDEWGFRGMVLTDYFAGYGYQNADQITRNGGDLMLATIDMPISTVNVQDAAGVTA LRGASHNILYTVANSWMYENGQPEVTRNTWEYITWAVAGILILSLLGLEVRSIRRYRSRK AQAVITVEPNASIDEAGSETVEE >gi|292821002|gb|ACYT02000029.1| GENE 76 76423 - 76914 377 163 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190268|ref|ZP_06608764.1| ## NR: gi|293190268|ref|ZP_06608764.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 163 1 163 163 326 100.0 4e-88 MLEELSRFSSHHGFPRAKALIEATDGGCDNIFEATVLWIIKSLYSGRVVTQFPIAVEDHI YFGDIVLPDLKVIIEPDGRKKFGDTEQEVRENTGKWLARQHDLTNTGWRVIRVRWHDTED LVTFRTNIAAQIQIEHLPLTQQSLRLWAEPRQQHVPRKQRTHK >gi|292821002|gb|ACYT02000029.1| GENE 77 77418 - 81320 5646 1300 aa, chain - ## HITS:1 COG:MT0696 KEGG:ns NR:ns ## COG: MT0696 COG0086 # Protein_GI_number: 15840071 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 1291 1 1303 1316 1601 62.0 0 MLDAKTFDSLKITLATGDNIAEWSHGEVKKPETINYRTLKPERDGLFGEQIFGPTRDWEC ACGKYKRVRYKGIVCEKCGVEVTRSRVRRERMGHIDLAAPVTHIWYFKGVPSRLGYVLNL APKDLEKVIYFAAYMITEVDEKGRHEDLAELRAELEVQKKQMENNRDATINDFAEQLESD MAALEKDGASQAERERARKQGEREMAKIRRRFDGDIEGLEAVWERFKDLKVGDLEGDERL YRAMVARYGTYFKGDMGAAAIQKRLETFDLEAEVAALRQTIASDSGPRKARAIKRLKVIN AFVATGNSPASMVLTKIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNTRLKRLLEL GAPEIIVNNEKRMLQESVDALFDNGRRGRPVAGPGNRPLKSISDMLKGKQGRFRQNLLGK RVDYSGRSVIVVGPQLQLHQCGLPKQMALELFKPFVMKRLVEKNYAQNVKAAKRKVERQR PEVWDVLDDVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLACGAFNADFDGDQ MAVHLPLGAEAQAEARILMLSTNNILKPSDGRPVAMPSQDMIIGLFHLTSTPDPSVPVEK DEDGNPVIPYFSSQAEAQMAYDAGNLHLNATARIRFADGTVPPEGWEAPEGWEPGDELIL ETSLGRAIFNEQLPTDYPFINEVVGKKQLGNIVNTLTQRYPNVLVADCLDALKSAGFHWS TWSGITIAFSDIQASPRKREILARYEAKAAEIVEQFETGIILEETRYEELVKLWLQCTEE VADDMRANFDERNTVYRMVNSGARGNWSQVQQIAGMRGLVSDPKQKLIEQPIKANYREGL TVLEYFIATHGARKGLVDTALRTAESGYLTRRLVDVSQDVIVREADCGTRAGLKIDIAHK NEFGEWEASETIETTAYARNLARDAVNETGEVVMPAGTDLGDDQLAELVAAGVEQIVCRS VLTCESQVGTCAACYGRSLATGKQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAASAA DITQGLPRVQELFEARSPKVEAKMNEAAGRVHIDDEDPSARKVVITRDDGKEDLVIEVSR RQKLLVSEGQHIEAGTPLTEGQLDPKEILRIMGRNVSQKMLVDEVQKVYRDQGVGIHAKH IEVIVRQMLRRVTILEPGDTTFMPGELVDRMAYLTQNRRVAAEGGQPASGRQMLMGITKA SLATDSWLSAASFQETTKVLTEAAMNGKSDSLVGLKENVILGKLIPAGTGLSRYNDVIVE PTAEAMANSNYSEADFGDGSVSEDFLDALGAIDFGMNFRE >gi|292821002|gb|ACYT02000029.1| GENE 78 81336 - 84812 856 1158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 670 1117 906 1386 1392 334 43 1e-90 MAANSTAKQPKHRISFAKLREPLQAPNLLGLQVESFDWLLGNDAWKARVEAAQASGHGDV PDVSGLEEIFHEISPIEDVAGTMSLSFHDHRLESPKYSMEEAKAKDYTYSAPMYVTAEFM NYETGEIKSQTVFMGDFPLMTPRGTFIINGTERVVVSQLVRSPGVYFEKLSDRSSDKETF GAKVIPSRGAWLEFEIDKRDAVGVRIDRKRKQSVTHFLKAVGMTESEIRETFAAYPVLLE TLEKDTVATQEEALLDIYRKLRPGEPANVDAAQTLLNNFYFDSRRYDLAKVGRYKINKKL AIEADPKASTLSLEDIVATVKYLLALHQGDKTFAGTRNGEAVEVRVEVDDIDNFANRRIR AVGELIQGQVRTGLARMERTVRERMTTQETDSITPQTLINIRPVVAAIKEFFGTSQLSQF MDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIESPEGPNIGLIGS LATFARINPFGFIETPYRVVKDGKVTDEIRYLTADDEKGHYIAQASSPLEADGSFAEHDV LCRVAGDDPTLIARDRVDYMDVSARQMVSVAAAFIPFLEHDDANRALMGANMQRQAVPLL TTEAPLVGTGMEMRAAHDSGEMILAAHSGVVSEVSADLIVVSTDEGGRDSYRLEKFERSN PGNCTNQRVIVDEGDRVEVGDVLADGPATSNGEVALGKNLLVAYMSWEGLNYEDAIILSR RVVEEDILTSIHIEEYEVDARETKLGEEEITRDIPNVSEESLADLDERGIIRIGAEVTAG DILVGKVTPKGETELTSEERLLRAIFGEKAREVRDTSLRVPHGEEGIVIGVREFNDDQDD LNPGVRQTVRVYVAQRRKITIGDKMAGRHGNKGVVSKILPVEDMPFLADGTPVDIILNPL GVPGRMNVGQVLEYHLGWLAHQGWDASAAVEAGEEWAAHLPADGIKTEPGTPVATPVFDG LEADELAGLLRNVNPNRDGDVLTNYEGKARLFDGRSGEPFPYPISVGYTYMLKLHHLVDD KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDTTGR VKVYEAIVKGEDIPEPGIPESFRVLIQEMRSLCLNVEALDAAGNVIDLREQDEDFNARED LGITLEARPNAAATIDAI >gi|292821002|gb|ACYT02000029.1| GENE 79 85283 - 87025 2406 580 aa, chain + ## HITS:1 COG:Cgl2559 KEGG:ns NR:ns ## COG: Cgl2559 COG0028 # Protein_GI_number: 19553809 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Corynebacterium glutamicum # 4 578 6 577 579 555 53.0 1e-158 MNVAEQIVTQLVDAGVHRIYGIVGDSLNPIVDAVRKTGGSKKGGIDWIHVRHEEAAAFAA SAEAQLTGKLAVCAGSCGPGNLHLINGLYDANRTGAPVLAIASHIPSVQIGSMYFQETHP DRIFEECSVYNELISSAAQSPRTVNSAIRHAVGLGGVSVITLPGDVSDLKAVEHVPTYAP ARPATLAPNATDIEEAAALLNKADKVAIFAGAGVEGAHDEVIALADALKAPIGHSLRGKH FIQYDNPFDVGMTGLLGYGAAAEGMNDADVLILLGTDFPYDQFLPDTPTIQVDTHAEKLG RRTDVGLAIHAQVKPFIEALLPHLRANRSDSFLKSKIKKHSEIMHAPVGAYTRNVEKMRP IHPEYAAHLLNETAAKDAIFTADTGMCNVWTARYIDPLGTRRLIGSLLHGSMANALPMAL GAQVAYPDRQVVSVSGDGGLSMLLGELITAKMYDLPVKVVVFNNSTLGMVKLEMLVNGLP DFQTDVPDTNYADIARAIGFHAERVEDASRLEDAYREAFAAPGPALVEVITDPNALSLPP AITGGQVVGFATAMSKIVLNRGIAEAFSMATSNMRNIPRL >gi|292821002|gb|ACYT02000029.1| GENE 80 87098 - 87688 477 196 aa, chain - ## HITS:1 COG:no KEGG:Bsph_2619 NR:ns ## KEGG: Bsph_2619 # Name: not_defined # Def: hypothetical protein # Organism: L.sphaericus # Pathway: not_defined # 5 175 1 171 185 173 50.0 4e-42 MLVVLRKYDTAIAFVCGALIVAFIAAAFTVPSFWDWLWQRHQNQLSWYIRPLFLIPLCWF AYKRSGAGIMATVLLLLTSMGWFPPPRQVSPRVQQFLQFEQQYLQGDWTPGKVLLTVMVP LSLAALAAALRRRNLWLGLAVMALIAIAKTLWSVAFAGEAGASVIVPAALGLLLCGGGLW CVAKLVRSRADTRSPR >gi|292821002|gb|ACYT02000029.1| GENE 81 87849 - 88481 527 210 aa, chain - ## HITS:1 COG:Cgl2483 KEGG:ns NR:ns ## COG: Cgl2483 COG3001 # Protein_GI_number: 19553733 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Corynebacterium glutamicum # 46 207 93 242 249 101 39.0 1e-21 MGEAHLTLPRHAHNDDNGDRHHAGIGVPSDAGHPGRPARGETAHDRAPASCRSWGAFYAR ERIAPYLYAPAFSASNRTLIERLCERLESGALDHGQPRLVADAIARTGGVGAARTHGDLW SGNVMWTPEGAVLIDPAAQGGHAEEDLAALAVFGCPHYERILAAYNEASPLEDGWRERVA LHQMHIIMVHCALFGRSYVPEAVSIARRYS Prediction of potential genes in microbial genomes Time: Tue May 17 06:26:45 2011 Seq name: gi|292820999|gb|ACYT02000030.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.8, whole genome shotgun sequence Length of sequence - 3042 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 191 156 ## gi|293190307|ref|ZP_06608772.1| putative fructosamine kinase 2 2 Tu 1 . - CDS 348 - 1010 226 ## gi|293190308|ref|ZP_06608773.1| conserved hypothetical protein 3 3 Tu 1 . - CDS 2013 - 2552 -201 ## - Prom 2669 - 2728 2.1 - TRNA 2588 - 2663 91.2 # Ala CGC 0 0 Predicted protein(s) >gi|292820999|gb|ACYT02000030.1| GENE 1 2 - 191 156 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190307|ref|ZP_06608772.1| ## NR: gi|293190307|ref|ZP_06608772.1| putative fructosamine kinase [Actinomyces odontolyticus F0309] # 1 63 1 63 64 102 100.0 9e-21 MDTIRKADSRRGRIAYEVAGLAWLAEASDPGAAVVPVLDLGATWLEEPRLVSVPPTAEAA ERF >gi|292820999|gb|ACYT02000030.1| GENE 2 348 - 1010 226 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190308|ref|ZP_06608773.1| ## NR: gi|293190308|ref|ZP_06608773.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 40 220 1 181 181 350 100.0 4e-95 MNTVSWAESVAAWSSFATAVFTLGLLVAAVWAGFTAVSAMRASKAASNAAAEANEQMKLD SIAQTRPYVYADIVPSLAGRRHFDLRITNVGKTAARNLHIQFDNWPEKIDDVAEHVKILF ETERTLPPGCSIRTYWRLEGNFSDGTTEAGMPKEGTIELFYGSDDPAAPQYQEQYEVLIF RSGLFPVAEDGPEPDNLHGTERSFYLLGQAIARSIGNLSR >gi|292820999|gb|ACYT02000030.1| GENE 3 2013 - 2552 -201 179 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPGCCWGGALLWRRWCSGRRRARPRGRAAWCARGRRPSCIMLLEAPRVFRAPSGPAAREI ATREPKGSEWSISKPARTLRTLRRPPHRRRLRCCVRWHVVSRPALALPPPTGTAARPHRR PPVRSGTLVKPSSPLLARAPSLVKPTAPLRARYTRFRRYFIEQRRRGFHGGVLRSLHWC Prediction of potential genes in microbial genomes Time: Tue May 17 06:27:30 2011 Seq name: gi|292820925|gb|ACYT02000031.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont0.9, whole genome shotgun sequence Length of sequence - 71179 bp Number of predicted genes - 70, with homology - 62 Number of transcription units - 46, operones - 17 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 629 641 ## gi|293190342|ref|ZP_06608774.1| conserved hypothetical protein - Term 920 - 959 3.0 2 2 Op 1 3/0.083 - CDS 1004 - 1702 319 ## PROTEIN SUPPORTED gi|227376194|ref|ZP_03859656.1| acetyltransferase, ribosomal protein N-acetylase 3 2 Op 2 3/0.083 - CDS 1699 - 2925 1412 ## COG0303 Molybdopterin biosynthesis enzyme 4 2 Op 3 . - CDS 2931 - 3854 1242 ## COG1210 UDP-glucose pyrophosphorylase 5 3 Op 1 . + CDS 3895 - 4539 461 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 6 3 Op 2 . + CDS 4715 - 5239 716 ## COG1970 Large-conductance mechanosensitive channel + Term 5266 - 5316 18.9 - Term 5257 - 5301 15.9 7 4 Op 1 . - CDS 5369 - 5590 267 ## gi|293190348|ref|ZP_06608780.1| putative toxin-antitoxin system, toxin component 8 4 Op 2 1/0.083 - CDS 5583 - 9791 4965 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits 9 4 Op 3 . - CDS 9817 - 10500 743 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 10 4 Op 4 . - CDS 10510 - 10734 300 ## gi|154507888|ref|ZP_02043530.1| hypothetical protein ACTODO_00372 - Prom 10756 - 10815 1.7 - TRNA 10750 - 10822 69.2 # Arg CCT 0 0 11 5 Tu 1 . - CDS 10976 - 11908 851 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 11942 - 12001 2.5 12 6 Tu 1 . + CDS 11801 - 12007 183 ## - Term 11976 - 12022 16.0 13 7 Tu 1 . - CDS 12042 - 12791 1105 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 12972 - 13031 2.8 - Term 13120 - 13152 5.3 14 8 Tu 1 . - CDS 13171 - 13863 857 ## COG1321 Mn-dependent transcriptional regulator 15 9 Tu 1 . + CDS 14022 - 15149 1383 ## COG1932 Phosphoserine aminotransferase 16 10 Tu 1 . - CDS 15166 - 16455 1604 ## COG0477 Permeases of the major facilitator superfamily 17 11 Tu 1 . - CDS 16602 - 18053 2107 ## COG2252 Permeases - Term 18109 - 18145 1.7 18 12 Op 1 . - CDS 18175 - 19029 809 ## Jden_2046 hypothetical protein 19 12 Op 2 . - CDS 19022 - 19399 460 ## COG1278 Cold shock proteins + Prom 19507 - 19566 1.9 20 13 Tu 1 . + CDS 19604 - 21691 2000 ## Sked_31440 methanol dehydrogenase + Prom 21755 - 21814 2.4 21 14 Tu 1 . + CDS 21947 - 23494 866 ## Ksed_07010 protein of unknown function (DUF477) 22 15 Tu 1 . - CDS 23485 - 23661 64 ## - Prom 23765 - 23824 7.1 23 16 Op 1 . - CDS 23877 - 25022 1058 ## COG4292 Predicted membrane protein 24 16 Op 2 . - CDS 25070 - 25168 69 ## - Prom 25347 - 25406 3.3 25 17 Tu 1 . + CDS 25812 - 26117 149 ## COG3464 Transposase and inactivated derivatives 26 18 Tu 1 . - CDS 26119 - 26361 85 ## gi|293190367|ref|ZP_06608799.1| conserved hypothetical protein 27 19 Tu 1 . + CDS 26246 - 26461 146 ## 28 20 Tu 1 . + CDS 26701 - 27426 1376 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription - Term 27445 - 27487 15.7 29 21 Op 1 . - CDS 27536 - 28108 834 ## Sked_31470 hypothetical protein 30 21 Op 2 . - CDS 28188 - 28841 290 ## COG1309 Transcriptional regulator 31 22 Tu 1 . + CDS 28819 - 31155 926 ## COG1233 Phytoene dehydrogenase and related proteins + Term 31175 - 31227 5.2 32 23 Op 1 18/0.000 - CDS 31233 - 32753 2362 ## COG0554 Glycerol kinase - Term 32832 - 32862 1.4 33 23 Op 2 . - CDS 32891 - 33676 1379 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 33866 - 33925 3.1 + Prom 33852 - 33911 2.9 34 24 Tu 1 . + CDS 33991 - 34932 1054 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain + Term 34960 - 35012 18.2 - Term 34948 - 35000 19.2 35 25 Op 1 . - CDS 35016 - 36635 2571 ## COG1190 Lysyl-tRNA synthetase (class II) 36 25 Op 2 . - CDS 36692 - 37453 522 ## COG0524 Sugar kinases, ribokinase family 37 26 Tu 1 . + CDS 37656 - 39029 1488 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 38 27 Op 1 1/0.083 - CDS 39128 - 39823 634 ## COG2120 Uncharacterized proteins, LmbE homologs 39 27 Op 2 14/0.000 - CDS 39892 - 41214 1690 ## COG1653 ABC-type sugar transport system, periplasmic component 40 27 Op 3 38/0.000 - CDS 41245 - 42090 1111 ## COG0395 ABC-type sugar transport system, permease component 41 27 Op 4 . - CDS 42077 - 42955 955 ## COG1175 ABC-type sugar transport systems, permease components - Term 43081 - 43123 14.1 42 28 Op 1 12/0.000 - CDS 43138 - 43569 606 ## COG0853 Aspartate 1-decarboxylase 43 28 Op 2 3/0.083 - CDS 43569 - 44522 1209 ## COG0414 Panthothenate synthetase 44 29 Op 1 . - CDS 44655 - 45563 974 ## COG5495 Uncharacterized conserved protein 45 29 Op 2 7/0.000 - CDS 45568 - 47127 1657 ## COG3428 Predicted membrane protein 46 29 Op 3 . - CDS 47124 - 47624 805 ## COG3402 Uncharacterized conserved protein 47 30 Op 1 . + CDS 47623 - 47760 65 ## 48 30 Op 2 40/0.000 + CDS 47771 - 48475 1091 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 49 30 Op 3 . + CDS 48477 - 49943 1624 ## COG0642 Signal transduction histidine kinase + Prom 50033 - 50092 1.6 50 31 Tu 1 . + CDS 50119 - 51081 1180 ## COG4339 Uncharacterized protein conserved in bacteria 51 32 Tu 1 . + CDS 51301 - 51594 411 ## gi|154507919|ref|ZP_02043561.1| hypothetical protein ACTODO_00404 - Term 51653 - 51704 22.5 52 33 Op 1 . - CDS 51727 - 53355 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 - Prom 53470 - 53529 1.7 53 33 Op 2 . - CDS 53665 - 53886 56 ## 54 34 Tu 1 . + CDS 54238 - 54618 233 ## - Term 54880 - 54920 14.1 55 35 Tu 1 . - CDS 54939 - 55517 637 ## Bcav_0815 hypothetical protein 56 36 Tu 1 . + CDS 55604 - 56314 479 ## COG0692 Uracil DNA glycosylase + Term 56388 - 56430 -0.9 - TRNA 56384 - 56459 96.6 # Thr TGT 0 0 - Term 56613 - 56661 20.0 57 37 Op 1 . - CDS 56673 - 57605 1330 ## Arch_1641 DsbA oxidoreductase 58 37 Op 2 . - CDS 57666 - 59597 1093 ## COG0515 Serine/threonine protein kinase 59 38 Tu 1 . + CDS 59859 - 60989 1974 ## COG3839 ABC-type sugar transport systems, ATPase components + Term 61020 - 61072 10.6 60 39 Op 1 . + CDS 61154 - 62416 1281 ## Arch_1644 hypothetical protein 61 39 Op 2 . + CDS 62457 - 63200 954 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 63285 - 63330 18.1 - Term 63273 - 63318 18.1 62 40 Tu 1 . - CDS 63344 - 64549 1553 ## gi|293190406|ref|ZP_06608838.1| conserved hypothetical protein 63 41 Tu 1 . + CDS 64608 - 64739 83 ## + Term 64831 - 64874 4.5 - Term 65006 - 65047 13.9 64 42 Tu 1 . - CDS 65086 - 66111 1705 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 66154 - 66213 3.0 65 43 Tu 1 . - CDS 66431 - 67225 1225 ## gi|293190408|ref|ZP_06608840.1| beta-N-acetylhexosaminidase - Prom 67447 - 67506 1.8 66 44 Tu 1 . - CDS 67555 - 68250 495 ## COG0566 rRNA methylases 67 45 Op 1 . + CDS 68285 - 69106 1118 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 68 45 Op 2 . + CDS 69133 - 69702 892 ## COG0461 Orotate phosphoribosyltransferase + Term 69720 - 69774 25.2 69 46 Op 1 . - CDS 69780 - 70568 888 ## COG0300 Short-chain dehydrogenases of various substrate specificities - Term 70595 - 70641 14.4 70 46 Op 2 . - CDS 70650 - 71126 353 ## gi|154507937|ref|ZP_02043579.1| hypothetical protein ACTODO_00423 Predicted protein(s) >gi|292820925|gb|ACYT02000031.1| GENE 1 2 - 629 641 209 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190342|ref|ZP_06608774.1| ## NR: gi|293190342|ref|ZP_06608774.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 209 76 284 285 249 100.0 6e-65 MHQGTTGRTRPVIDRRNNKAVREIAKLRARRAARLAAESAAGRRRMVVTGVCALATVVLG IVIAATSIAWVWIAIPAAALVASLATSRVAAVRSQRASERELELLTKLRGDVRGAGRPTA AAPADTQASSSISEEVSEVVEATEPQTGSVPSLVFNVEVPEVVEVADTPARAWTVAPIPA PTYASRERVRGRIVHADTDLRGIPRIAAA >gi|292820925|gb|ACYT02000031.1| GENE 2 1004 - 1702 319 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227376194|ref|ZP_03859656.1| acetyltransferase, ribosomal protein N-acetylase [Kribbella flavida DSM 17836] # 47 223 17 203 205 127 37 2e-28 MRHLFRRSPRVWGRDIEMLTLRVADPVGRDFLRSGTELNPRPHELVVRPVHGEEHRTLDA VRRTDGHWLRPWEATLPPDTLEHIPTFSQYMRRADRDHREGTGLIFGVQIDGRFVGQFSI SNVHWGAMSTGMLGYWIVSEWSGRGLGSLVAALVLDLVVGELGLHRVEVCVRPENERSLG VCRGLGLVEEGLRPRFMHIGGQWADHIAFFIDAESLPEGGLVRRRWGSSAID >gi|292820925|gb|ACYT02000031.1| GENE 3 1699 - 2925 1412 408 aa, chain - ## HITS:1 COG:MT0454 KEGG:ns NR:ns ## COG: MT0454 COG0303 # Protein_GI_number: 15839826 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 1 403 1 400 405 234 43.0 2e-61 MRSVADFYQDCMAVAHALPPLDVQLADAVSCVLAEDVQAPFNLPVADLSACDGYAVRIRD CEGATLESPVTLPVTEEIRAGAVDPAALVPGTAIRIASGAPMPSGAEAVVSLEFTDHGIA QVALRTAPANGENIRRRAEDVAQGDTVLRSGTRIGARQMALLAGVGRDRVLVHPRPRVVI ISIGDEIVEPGGEARPGTVFDANGHALSTAVADAGAQTFRVAAVPDERARLRETIEDQLV RADLILTTGGISYGSGDTVREVLGALGTVRFDNVAAWPGHIMGVGTVGAEDGQPGTPIVC LPGDPVSAQVCFEVFVRPALRHMQGWTAVNRPVVRAAIDRSWYSPRGRREFVRVRLTGSP RSGYNAAVMGTPASLLLSALADSNALAVVPEDVTTVRAGDRLQCLVLE >gi|292820925|gb|ACYT02000031.1| GENE 4 2931 - 3854 1242 307 aa, chain - ## HITS:1 COG:BH3652 KEGG:ns NR:ns ## COG: BH3652 COG1210 # Protein_GI_number: 15616214 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Bacillus halodurans # 8 306 3 289 297 215 40.0 8e-56 MSDKNQPVVHAVVPSAGRGTRFLPITKSVPKEMLPVVDRPSIEYIVREATDAGIEDILFV TRAGKQSIEDYFDAEPGLEADLEKAGKEKALEYVNEYKKYARVHSVRQGHPLGLGHAILQ AKSHVGDAPCAVLLPDDLMEPGSQLLRKMIQVRGALGGTVVALLKVTPEQATAYASTAVE VLPIPEGVDLEEGQLMRITDVTEKPPLEEVKSEYAVVGRYLLDPAVFTALENIEPGAGGE YQLTDGYARMIDLPEEEGGGLYGVVIDERRFDTGDKLGYLEANVTLALEDPALGAELKEF LRSKLED >gi|292820925|gb|ACYT02000031.1| GENE 5 3895 - 4539 461 214 aa, chain + ## HITS:1 COG:ML0181 KEGG:ns NR:ns ## COG: ML0181 COG0212 # Protein_GI_number: 15826993 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Mycobacterium leprae # 44 209 27 190 197 72 35.0 4e-13 MDTKTTLRAEVRSRRRARRAGTSTVEAPLATEFNQSPIPVRDRAEAEGLAHQIRTLASSM GAVTLPALFVPTPLEPDMSLALGLFERALLPVLLDEAGAPLGAPRWGLWEPGQALVTLGR PPAQPSGEVLGAESLKEADLIVIPGLAASADGTRLGQGGGWYDRALTHRSPGTPVVAVIF DDEVLEAEIIPAEPHDVPVDGIVTPTRTIAVNLR >gi|292820925|gb|ACYT02000031.1| GENE 6 4715 - 5239 716 174 aa, chain + ## HITS:1 COG:DR2422 KEGG:ns NR:ns ## COG: DR2422 COG1970 # Protein_GI_number: 15807411 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Deinococcus radiodurans # 38 167 1 123 128 105 46.0 3e-23 MKERQQGARSPAAQSRHAETFGSSDLPAHPAALTGDNMIQGFKEFISRGNVVELAVGVII GAAFKNIVDALVDGIINPLIAAVIGKPDFSDAFILTLNGTDVKFGVLISAVINFLLMAIA LYLCIIVPMNALNERMKKQAAADEAEAEANKEESDEVKLLTEIRDALAQGTPRH >gi|292820925|gb|ACYT02000031.1| GENE 7 5369 - 5590 267 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190348|ref|ZP_06608780.1| ## NR: gi|293190348|ref|ZP_06608780.1| putative toxin-antitoxin system, toxin component [Actinomyces odontolyticus F0309] # 1 73 1 73 73 107 100.0 3e-22 MSETTPRKRRRVARYVSDVDRRLIEEGLPPSWEDRVRPEDTRPGSMADAPDRGDGANDAQ LLENVPPHAQVRA >gi|292820925|gb|ACYT02000031.1| GENE 8 5583 - 9791 4965 1402 aa, chain - ## HITS:1 COG:TM0618 KEGG:ns NR:ns ## COG: TM0618 COG1112 # Protein_GI_number: 15643384 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Thermotoga maritima # 942 1208 1025 1288 1289 106 27.0 3e-22 MVPSIFSRRSAPEPEAPEASSTSTHPTTLVGSAREKWRSRLDQDIAADSTSLPTLSLSGA HPGGLAQLYTEHPVRLSLLIREPIALGRALERARSIIARSEQRASAHGTGPIHLGIGTAS WRNGTDAVTVPALLRPVRLVRRDDDVLIALGRGGLLAPELAEALRSHGLDVDGDTILAQA SGAHGFSSSQAMAALRDACAALPRFEVRDDLVIGLFCHPAGALAASLAEDVTALEDSQVI RALAGDQDARNDLRSEAPVPNPADRDPWAEKGVGDLIPSQQDAVEAASGGRSVFIDIPAH SDDASVVAAILADAAATGRSVLHVSTSPSRSIAAYTRLADLGLADIVANIDGYSDARKTL AARVSAAMEDTSPVVDQASVDEMRARLRQVRGQLASYVAELHQPYGRFGVCAADALRALT DLTSGENAPTTRVRLDEKTLYEIAVDQGESARALLREALASGTLKGSASSAWGNAVLTSD EQASDVLLRVDRLSKTLPELRVRIATVAGEAGIKPAGTLAQWDRQLAMFDGIADLLDVFL PRVFERSAADMVIATAPKQWRKDHDISMGRSERNRLVKQAQDLVRPGVHVPDLHRALIRV QERRDAWCAVCGDDSWPILPAKIGEISALTDAVRDDLDAIAPVFAAEEPDLVGTHLQRLT TLIERWAGDTSAAREVPARLQMRERLAAHGLDKLAQDLADREVEDAAIDTELDLAWWASL LRAMLASQPALGGVDPASLEDLAREGCELDEAQVASLIPQAITGVRRIRTNALAARPSQY EELHDLLADGTAPSDLDLLTSYPLVRHLLPVLMTVPAMVPALAPTGRTVDVVVLDGADGL PLAELAPIIARGHQLVVIDDLTGASESGATRELAGVLPVVRVEPGPRRLNDQVALLLARY GYEHAGIPVPWTAANAPVSARWVEATGMPAPGAHAIESTAAEVRAVVDAVIEHAVEAPER SLAVVALSERHTQRIREALESVKADEPGLASFFDPATPEPFVVVGPDQVAGLTRESLILS VGFAKTPHGRVIHDFGVLSSEEGADALAEVLRVVRGDLTLVSALHSAEIDRDRLGHEGSR MLVDLLEIAEGHAGEGMDAWPVLAGEPDRLLVDLAERLYSRGLEVVANVGIPGGMRIPLA IGHPESPGRLLLAVLTDDEEYLAEPSQRVRDRARPRWLEAQGWAVYTALSMPLFIDPDKE ASLVVDALLDALEKLRATDDEPVVEVPERIADDEAADERVEERAEEASSGDGDEGADEAE DSSDASAPRMPMLDDGLDEESKRRKKADEDTTGMLLAIKRKERASEENRGPRPAIAKGLP LAAYSDDQLDEMAAWVRSDGVERTDLETAEELREALGITRRGFQSDAVLGNVVRRTKPAA SAQESDEASASDDAQLEDSSDE >gi|292820925|gb|ACYT02000031.1| GENE 9 9817 - 10500 743 227 aa, chain - ## HITS:1 COG:SP1447 KEGG:ns NR:ns ## COG: SP1447 COG0697 # Protein_GI_number: 15901297 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Streptococcus pneumoniae TIGR4 # 1 220 76 295 298 147 41.0 2e-35 MIYAVFGLAACQITYMGVIRASNAGTGTVLEYLGLILIVVWVCLTHRRWPRASEVIAIVL AVTGTFLLCTHGSLDSLVITPTALAWGAVAALTLATYTLLPARLIAAYGADVVVAYGLLI AGACVGLVGRVWRFHITWTPDVVLAMFSTVVLGTAVASTAFLWGVDRIGPVKASLIGSLE PIAATAFSALVMGSSYTGIDIAGMALIVGAVVTISVVDLLRARRVTQ >gi|292820925|gb|ACYT02000031.1| GENE 10 10510 - 10734 300 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507888|ref|ZP_02043530.1| ## NR: gi|154507888|ref|ZP_02043530.1| hypothetical protein ACTODO_00372 [Actinomyces odontolyticus ATCC 17982] # 1 74 1 74 305 124 97.0 2e-27 MRNALGYLVTVVAALCWGASGVSADYLMEHHGIELTLISFFRMFVSGILALVYVLARSRG VSARHRELVSSSRN >gi|292820925|gb|ACYT02000031.1| GENE 11 10976 - 11908 851 310 aa, chain - ## HITS:1 COG:Cgl2878 KEGG:ns NR:ns ## COG: Cgl2878 COG0589 # Protein_GI_number: 19554128 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Corynebacterium glutamicum # 1 291 1 293 301 106 32.0 7e-23 MSSTEVILVGVDGSTESLAAVKWAADRGARTGARIHCLCTYALASYSAAALDGGYAVLDD EALKAGAEQVVEEAKALARERGATHVSGSTEPGDPAGVLIDFSAEVDMIVVGSRGGGGFA DRLLGTVSSALPAHAKCPVVVVPRHTSGKKFTPVERVVVGIDGTDQPSCALKRAIGEARL WDARLTAVSAVPIAVGPSVMTWTPTGVDHSALLAQVREGMDAAIAAALDGDDMHVSRHAL DGSAASLLIEFSTAVDLVVVGTRGRGGLAGVLLGSTSQTVLGHSTCPIMIVPSAHLGDAG TAVHTEWERR >gi|292820925|gb|ACYT02000031.1| GENE 12 11801 - 12007 183 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDTRSGARAAISGPFDGGKALRRAIDTDQNDFGRTHDVLLVVAVTYIVPHFNDPRKPNPS TNSDPRSP >gi|292820925|gb|ACYT02000031.1| GENE 13 12042 - 12791 1105 249 aa, chain - ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 122 241 128 246 255 100 44.0 3e-21 MKTIKPAPRHRMARRPLTDSVVEGVNVSGTARPIAFASAAGVALTAIAAGVANAAPATPQ SEPQSADLNTTTVAVDDVTTVEVPDIEWTAEEDVTASATAEAPAPTPAAATPAADQSDSA ASRSETRSDATSDTSARQATLNAAGGDIVPVALGLTGIPYVYGGETLGGLDCSGLVKYAY AAAGINLPHSSSAQAAGGTIVSDPQPGDIVSYPGHVAIYIGGGQMVEATVPGRLSQVSPV RPGATYVRY >gi|292820925|gb|ACYT02000031.1| GENE 14 13171 - 13863 857 230 aa, chain - ## HITS:1 COG:MT2784 KEGG:ns NR:ns ## COG: MT2784 COG1321 # Protein_GI_number: 15842249 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 8 191 3 195 230 195 56.0 5e-50 MKEADVADLIDTTEMYLKTILELEEDGVTPLRARIVDRLGHSGPTVSQTVARMERDGLLH VMGDRRLELTDTGRARATEVLRKHRLAERLLLDVIGMDWAQVHDEACRWEHVMSDAVEAR LEELLSNTCVDPYGNPMPGCAPLEGAYSAELAVRSLEAGALTLARIGEPIQADAELLASF DELGLRSGARVGLSAHGDVVRVAALDEAGEVRGYLTIPMALAAHLFVRDE >gi|292820925|gb|ACYT02000031.1| GENE 15 14022 - 15149 1383 375 aa, chain + ## HITS:1 COG:Cgl0805 KEGG:ns NR:ns ## COG: Cgl0805 COG1932 # Protein_GI_number: 19552055 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Corynebacterium glutamicum # 1 372 1 370 376 320 46.0 3e-87 MVAFPDIPQALLPADGRFGCGPSKVRAAQIEALSAPLLMGTSHRAAPVRDVVASLKDGLR ALLSVPSDYEVVLGNGGASAFWDVACACLISSRATFGSWGAFGAKFASEAVHAPHLTAPL IDEAAHGSLVTVSPRGASEGIDVYAYPHNETSTGVTSPVYRVEAPDALTLVDGTSIAGAA PVDLTQVDAYYFSLQKALGSDGGLWVAVLSPAAVERARRVEESTDGRWVPQFLSLSAAID NSRKDQTLNTPALATIVMAERQVRWLLERGGMDAVSAHCTQASSLIYDWAEANLAARPFV DNPAWRSPVTATIEINEAASASELAAHLRARGIVDIGAYRGVGTNQLRIGTWPSVEIEDV EALLACIDYCLERAL >gi|292820925|gb|ACYT02000031.1| GENE 16 15166 - 16455 1604 429 aa, chain - ## HITS:1 COG:CAC0458 KEGG:ns NR:ns ## COG: CAC0458 COG0477 # Protein_GI_number: 15893749 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 4 383 8 388 409 165 26.0 1e-40 MSATFASMRYVNYRYWFVASLIASTGVWLQRVAQDWYVLTVLTDHDASQVGLVTALQFLP IILFSAWAGVLADRIPGRRLLQCTQVGVGLVSLIIGIVVLTGTGELWHQYVLAFISGTIS AVDTPARQAFVGELVPHEKMANAVALNATAFHTARLIGPASAGFFIDWWGIGPVFLIDAV MFMAPVIALALMRGDQLYPRTLVPSAPGQLRESVAYVHSRTDIRIILALIFVVSALGMNF QMTSALMATTVFGKAAGSFGILSTFMAVGSILGSTGAARRAPRLRIILIGAAFYGTAEIL LALSPSYWWFALLSIPTGFGMLTMNTSASALVQTRTDPDKRGRVMALYSLVFLGATPIGS PLIGWVGTTFGARWSILVGGIASLGIALICGAWAMIHWKGRVVRRRSLPWVGIEADSSAD APRRSVDPL >gi|292820925|gb|ACYT02000031.1| GENE 17 16602 - 18053 2107 483 aa, chain - ## HITS:1 COG:Cgl0801 KEGG:ns NR:ns ## COG: Cgl0801 COG2252 # Protein_GI_number: 19552051 # Func_class: R General function prediction only # Function: Permeases # Organism: Corynebacterium glutamicum # 39 481 1 453 453 341 50.0 2e-93 MSTQEKTAPSHGGFAQSLDSFFQISERGSTISHEIRGGIVTFFAMAYILVVNPAILGNAV PEDGSITTQGIAAGTALVAGIMTILMGVVANYPLALAAGLGLNAVVAFTLVLGAGLSYGE AMGIIAWEGILIFLLVLTGFREAVFRAVPAALKTAITVGLGLFVALIGLVNAGIVRTGAT PVQFGISGSLDGWPALVFVFGLFLMMILYVRKVKGAVLISIIASTILAVIVQAFAHIDRI SDTNPTGWGQTVPELKGSPIAVPIFDTLGKVDLFGGFGKLGVVSVILLVFSLMLADFFDT MGTMVAVGAEGNLLDKDGNPPKTRQILIVDSLAAVAGGVGGVSSNTSYVESASGVAEGAR TGLASVVTGILFLLSTFLAPLVELVPTEAASTALVFVGFLMMTQVTGIDWDSPEVAIPAF MTIAFMPFGYSVSVGIGVGFVTYTVIQLVKGKAAKVHPLMWLVAGLFIIYFLMGPIQRLL GVG >gi|292820925|gb|ACYT02000031.1| GENE 18 18175 - 19029 809 284 aa, chain - ## HITS:1 COG:no KEGG:Jden_2046 NR:ns ## KEGG: Jden_2046 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 13 248 15 254 259 217 49.0 5e-55 MPKTSARLRAVKKDAVLEAAVDVARAGAEAVAHPRPVGEHVGFEMVSERLATHYFASTDA GYVGWCWAVTVARVPRGRVATVCEVGMTPREGALLAPAWVPWEDRLRPSDISRDDVLPYK ADDERLVQSFEDTSVDPDLPVVRELGLGRVRVLSPEGHSQAAKRWYESERGPKSGRRPRN TCSTCGFLVKMGGDMRTMFGVCANEWATDDGAVVSLDHTCGSHSETDVPKNGTAWPVRPS RVNEGALDAEPMPRASNEAKKDEAAVAEVTSAQAEAPTGEEPEG >gi|292820925|gb|ACYT02000031.1| GENE 19 19022 - 19399 460 125 aa, chain - ## HITS:1 COG:ML2147 KEGG:ns NR:ns ## COG: ML2147 COG1278 # Protein_GI_number: 15828153 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Mycobacterium leprae # 1 125 1 136 136 111 47.0 4e-25 MPTGKVRFFDADRGFGFIAGDDGADVFLHSSALPADHANPRVGARVEYSVADGRKGPQAL SVRFLKETASVARAKRRKPQAMVPVVEDLIKLLDSSSAALRRGSYPDNATKIAKVLRAVA EEFDA >gi|292820925|gb|ACYT02000031.1| GENE 20 19604 - 21691 2000 695 aa, chain + ## HITS:1 COG:no KEGG:Sked_31440 NR:ns ## KEGG: Sked_31440 # Name: not_defined # Def: methanol dehydrogenase # Organism: S.keddieii # Pathway: not_defined # 38 638 55 635 694 148 30.0 6e-34 MVYVDLFATSQEDPVTRIRRFSLIAVLTAILLALGLPALAASPMSISDSVTDPDGWLSSA DRSSIESATSRAVSSGKPVKVVVVANFSGTDADSWCKQTVERSSLTNGTVVYVIAYSQRR DAACSYNGPSSSSLQSAVRASEGQLTPNPLTSSAVANGVNSFVNALVSGTSSSGSSSTGS SYSSNAGATNDDTGSLFGMFVMFLLLVGGVIAVAIGVARSSRRNRLAAQQAAQVDAQSAA RAAQEANRQLLSADEQVRTATDELNYARAQFGLSSTDEFARAIEAGKAAVSRGFSAQGQM NSATLPAEQLRLATAIMRDLGANMNPLSAIQASFATKRAEQASLPERIAEARERLAEELT DLERAKSELASISALYPAQMLASLQDNPEQASALLTSARTALDTAEASASTDRAHAASAL DTALRALTMANHQTDAIFSAKSDLDAIRDRLVAAISSISSDITDVNELHTDPAVFNPMVA DAHAAIAEAQAALANTGDPLAALEHLRMSEATLDAALEPLRTKEEAYEKARTAAEAQISL AESAVTQAQRYVQGRRGAIGLDLRSTLNNAETALSTAQRSLEDDPEAASTHAMNARALAD SVMATPIQNFGGSWGQPTTGNGSYTGSSLGDFLLWSTLFSNSGSHHRDDFDPFHSGSSSS GSGWSFASGGGSDWGSSSSSSDWGSGGWSSASGSF >gi|292820925|gb|ACYT02000031.1| GENE 21 21947 - 23494 866 515 aa, chain + ## HITS:1 COG:no KEGG:Ksed_07010 NR:ns ## KEGG: Ksed_07010 # Name: not_defined # Def: protein of unknown function (DUF477) # Organism: K.sedentarius # Pathway: not_defined # 13 483 69 518 716 81 23.0 8e-14 MLALLVGGAPAYATEPLTTSGHVTDPDGFLSADERAHLESDAESLRSTYGVIIDAVVVPN FSDQKPSVWCQATLEKSRTAEKGILYVVSYEDGTDTYCADAQFARNLTTDPSLKRTFDDA LANARNNYTSSPLTSDAVSAGISSFISDIDTTSYIHAHVNRYNITTQQGQDSRNEDYTTH RMIAWVIAIGLFVFFLFLELRAKLREQEQDDGRGTRSADLTPLVDPVRREALRVAAEARR RLSEAEEQVRAAEEDWNFARAQFGSAAAEEYGRRLEAAKAAVARGLDTHKQIEQTPDSHA KRRLATTITEDLDKNLAPLRDARKEFAAQREKRSSLPTQLADARERLVEELADLERSKEE LSSIAGLYPESMLASLQDNPQRAKQLLESARAALETAGAHLDTDATRAASALDTAQRALT MANAQTDAIFSAKTDLDEFRKRLTVSIGSVSAALSDIKQHDSSDAFSPLLDEAEAAITRG QRALVSDEDPLGALENLRDVELRMDAILAPLMTQK >gi|292820925|gb|ACYT02000031.1| GENE 22 23485 - 23661 64 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGCARFGHCLVGFAHQLVHVEQCRTLVVLQYLRAQATVASASRIWRWAVPFALRLTYF >gi|292820925|gb|ACYT02000031.1| GENE 23 23877 - 25022 1058 381 aa, chain - ## HITS:1 COG:SA0341 KEGG:ns NR:ns ## COG: SA0341 COG4292 # Protein_GI_number: 15926054 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 5 358 10 362 377 115 27.0 1e-25 MATLIQHKRVEFSELFYDLVFVFAISKATALIHPLHGGVVAWDSLLDFFISVMVIINSWM IQTIYTNRYGTNSLFNMVIMFINMGLMLFISNMIGYNWQQWYYYTCWAVGTLTLTLFFQY LVQFFRGSTDNADRESIKGFLWLTGLQCLGVYLAALFPIHVGVYVFIASILLTFIVPIFL ITKDERFQVNLPHLIERVSLLVIITFGEMVIGLVSFFTVENFSIYSVLNFVIMLSLFLFY FGEFDHAIDEESSQKGLFVIYSHYPIFIGLMLMTVSMGYLLNPEANLLVAISFFYIGIGL FQAAVLANGPYNKNYLRYPRSYYSAQATLYLAALILSLLFASNPITVLSIATIFTLAIAS HFISFWVTRTKQYSVPYWGFF >gi|292820925|gb|ACYT02000031.1| GENE 24 25070 - 25168 69 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIENKELLDLIISEDYLTFILKHYEFICCTMF >gi|292820925|gb|ACYT02000031.1| GENE 25 25812 - 26117 149 101 aa, chain + ## HITS:1 COG:Cgl0876 KEGG:ns NR:ns ## COG: Cgl0876 COG3464 # Protein_GI_number: 19552126 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Corynebacterium glutamicum # 17 99 28 110 127 79 55.0 2e-15 MSAAGASGKNVTSGAGVPTALTEIVTLGRTLKRQSRDILAYFDHPHTTGGPTEAINGHLE HLRGSALELAKPHQLHHPSTPRNRRIQTPTTPPTMKSPFSC >gi|292820925|gb|ACYT02000031.1| GENE 26 26119 - 26361 85 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190367|ref|ZP_06608799.1| ## NR: gi|293190367|ref|ZP_06608799.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 13 80 1 68 68 116 98.0 4e-25 MYFESHCFGMGPVYVMVGCGWKSAGREPVSGMVMRNVVMIVSACGDECSSTSSIVVPVPQ ARVGRVWWLARPLRLPVGGI >gi|292820925|gb|ACYT02000031.1| GENE 27 26246 - 26461 146 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTLRMTIPDTGSRPADFHPHPTITYTGPIPKQCDSKYIRLRALRLAMMYFDLFATNRGG SHATDSRLSNT >gi|292820925|gb|ACYT02000031.1| GENE 28 26701 - 27426 1376 241 aa, chain + ## HITS:1 COG:all2342 KEGG:ns NR:ns ## COG: all2342 COG1842 # Protein_GI_number: 17229834 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Nostoc sp. PCC 7120 # 7 237 3 216 258 79 31.0 6e-15 MAEKQTILGRIAQLAKANINALLDKAEDPQKMIDQLIRDYTNSIIEAENAIAQTLGNLRM AERDYEEDVKAAADWGQKAAAASAKADSLRAAGDEAGADKWDNLAKVALGKQIQFENEIK TEEPALATQRDVAERLKSGLAQMKDKLSELKSRRDQLIAREKTAKAQAQVTEALGSINIL DPTSELGRFEDRVRQQEALAQGKMELAASSLDAQFAELQTDSSQVEIEARLAALKGNNTQ A >gi|292820925|gb|ACYT02000031.1| GENE 29 27536 - 28108 834 190 aa, chain - ## HITS:1 COG:no KEGG:Sked_31470 NR:ns ## KEGG: Sked_31470 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 2 190 5 192 192 224 59.0 9e-58 MENPNNQTTYLVVDGENIDATLGLSVLDRRPNPEERPRWDRVLESAHGRWGQKAKGLFFL NGSSGFLPMGFVQALTAMDYSVIPLSGPADMKVVDVGLQRTMDAIANLGSGDVILASHDA DFLPQIETLLDQGRRVAVMCFKEFLSSQLHELEERGLEIIDLEYDVHAFQVRLPRLHIID IDDFDPMSFL >gi|292820925|gb|ACYT02000031.1| GENE 30 28188 - 28841 290 217 aa, chain - ## HITS:1 COG:CC2204 KEGG:ns NR:ns ## COG: CC2204 COG1309 # Protein_GI_number: 16126443 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Caulobacter vibrioides # 30 184 22 177 215 78 34.0 9e-15 MTTCLLDIVKSGCCLGYTECMTRSTTSEGLREAILAISRDLLNEGGPSSLSMREVARRAG CTHQAPYHHFQGREGILVALVEEGYRSLERVLREARERSDGAPPQDVTRAAGHAYLSCAL ANPGVFRIMFRSDMYDADAHPGLRQASLAARSQLRSLAHTAYGTDDPHAEVTLWAYIHGL ATLVLDGPPALGSGQDAQCFARQAIESPFFIDGVTGA >gi|292820925|gb|ACYT02000031.1| GENE 31 28819 - 31155 926 778 aa, chain + ## HITS:1 COG:alr4631 KEGG:ns NR:ns ## COG: alr4631 COG1233 # Protein_GI_number: 17232123 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Nostoc sp. PCC 7120 # 17 518 14 508 533 133 24.0 1e-30 MSSRHVVISRHCLVLGVSMYDAIVIGSGIGALTTAGLLAGVAGARVLVLEKHSTPGGLTH SFRRMGASWDVGLHYVGDMHPGSRPRQLFEYLTGGALTWNRMPSGYDRFILPGHGLTVTI PSSFKEYQHLLISLFPHEKRAIQRYCRDVKRAYSWMSLRYMADMVPPQASPAIHLALRLR TGCALEHTEHYMERRFRDPALRALLTTHWGDYGVEPTRSAFVAHAMIVCHYMDGAWFPRG GSGQIARMIEERIRATGGEIRLCQDVDDILIDNGRAVGVRVSDRSGPTPVSYEERAPIVI SGVGARETYTRLLPTTGPVGALTARVRDRIARLGHGGSAVTVYLTLDHYPAGVDGSNIWV NTSQGPDNLEQMTEDLCRGRPQSAFISFPGIKAGDRHATVEIVSFAQPQAFDRWLGTRPG MRGEDYERLTSAMARGLIGLADTAIPGLTDAVRSVEVATPLTIEHFTSHEGGCFYGLPLT PERFAADLVSPSTPIDGLYLTGQDAGMPGIVGAAMAGMSTACKVLGPAGYPRIMRALRDQ VPTQDHASSSHDTTTERTAGAARHRATVQRARWMSPTTRDITLELPECATWEAGQYALVR VAPFEWRPYSLASAPGRTVRLLVDVRTKGMGASWASTTAPGDDVDLELPYGHWLVTPDRG TTDAEAPHRRIFIATGTGIAPFLAAFEAGRRDDDILIVGCSRTEDDLTGRVDTPLPRLIQ CVSREAAPGTFHGRITDYLNAEGIDPQATYYVCGSARIVRDILRIIQAGGARVSYETF >gi|292820925|gb|ACYT02000031.1| GENE 32 31233 - 32753 2362 506 aa, chain - ## HITS:1 COG:MT3798 KEGG:ns NR:ns ## COG: MT3798 COG0554 # Protein_GI_number: 15843314 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Mycobacterium tuberculosis CDC1551 # 3 502 13 515 517 590 60.0 1e-168 MTTEKFVLAIDQGTTSTRAIIFNHSGEIISVGQKEFTQIFPNPGWVEHNPIEIWETTRTV VAEALQKAEINRHNLAAVGITNQRETTVVWDKNTGEPVYNAIVWQDMRTSDIVKELEGDE GPDRFRQICGLGLSPYFSGSKIKWILDNVEGARERAEAGDLLFGNTDCWVLWNLTGGING GVHCTDVTNASRTMLMDIRTLQWREDVCEIFGIPMSMLPEIKSSSEIYGYGRKNGLLVDT PIAGILGDQQAATFGQACFEKGMAKNTYGTGCFMLMNTGTEPVFSDNGLLTTVAYKIGDQ PAVYALEGSIAVAGSLVQWLRDNLGMIVKSSDIGDLARTVEDNGGVYFVPAFSGLFAPYW RSDARGAIVGLTRYVNKGHIARAVEESTAFQSAEVLDAMNADSGVPLKELKVDGGMTHDD LVMQFQADLCGVDVVRPKVIETTALGAAYAAGLAVGFWSGTEDVVANWQEGKRWRPSMDT AERDRTYRLWKKAVTRTLDWVDDDVL >gi|292820925|gb|ACYT02000031.1| GENE 33 32891 - 33676 1379 261 aa, chain - ## HITS:1 COG:L0015 KEGG:ns NR:ns ## COG: L0015 COG0580 # Protein_GI_number: 15673226 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Lactococcus lactis # 24 260 11 240 245 191 49.0 1e-48 MLTTLLPAAADAAVPTTGQIFWSEFLGTTILLLLGGGVVATNLLPKSKGKGGGWLLINWG WGLAVFAGVYVAFRTGGHLNPAVTIAKVVAHMFDSNVTLAGDIPVTGTNVAVYIVAQFLG AFAGAVLCWLTFKKHFDEDCDPALKLGVFSTGPEIRSYGWNCLTEAIGTAVLILWVFVSG YTETAVGPLGVALIIVVIGNSLGGPTGYAINPARDLGPRIAHAILPIKGKGGSDWGYSWV PVVGPIIGAIVGTVLYYLILA >gi|292820925|gb|ACYT02000031.1| GENE 34 33991 - 34932 1054 313 aa, chain + ## HITS:1 COG:DR1935 KEGG:ns NR:ns ## COG: DR1935 COG2390 # Protein_GI_number: 15806934 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Deinococcus radiodurans # 1 299 45 345 348 207 41.0 2e-53 MYYLQGQTMETIARHLQISRSSVSRLLAHAREVGLVRISVSTSPGLKGTLAGQIADLFGV QVSVVPVHDVHTEVNRLHNVALVAAEHLIDMLFPGVTLGIAWGNTTAEVTRAMPHVSFAG STVVQLNGAATATESGMPYAEAIIARAAKAIGGRIVNFPVPAFFDYADTKEALWRERSVQ SVLNTIDSADVALFGVGSMSARLPSHVYSGGFLDPNEIAAAQNDGVVGDVCTVLIREDGS TNMHLNERASGPSPATLKKIPRRLCVVSGASKALPLLGALRAGVATDLVLDDGAAHELLD LVHTRMTPRRSYI >gi|292820925|gb|ACYT02000031.1| GENE 35 35016 - 36635 2571 539 aa, chain - ## HITS:1 COG:Cgl2631 KEGG:ns NR:ns ## COG: Cgl2631 COG1190 # Protein_GI_number: 19553881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Corynebacterium glutamicum # 1 536 1 522 526 514 52.0 1e-145 MTDSSSTPTQAPADDTPEQVKVRAAKRARLMEAGIPAYPVRLPITTTIKAVREKYAHLEA GEETEDYVGLAGRVILARNGGKLCFATLMDGEGNKIQVMLSAASVGAESLAAYKNDVDLG DHLFVHGRVISSRRGELSIFATPAEVTPEAQAEYDAAPTALPAPDASWAIASKAIRPLPK TWTTEDGEEITLSEDQRIRRRELDLITRPAARDMVRIRAAVNRSIRENFFRRDYIELETP MLQMIHGGAAARPFTTHMNALDTDLYLRIATEIYLKRAVVGGVDRVFEMNRNFRNEGMDS SHSPEFTSLEAYEAYSDYNGMAELTRDLIQQAARDAFDLSEGEEIVRLADGTEYDLSGEW DRIDLYGSTSEALGEEITVETPRETLVKYAERIGLEVDDYAVSGKIVEDIFEELVVSKLW APTFVYDFPEDTSPLTRYHRSRPGLTEKWDLYVRGFETGTAYSELADPVVQRERFEAQAL AAANGDPEAMVMDEDFLIAMEQGFPPCGGMGMGIDRLLMVLTGQGIRETIPFPLVKRLG >gi|292820925|gb|ACYT02000031.1| GENE 36 36692 - 37453 522 253 aa, chain - ## HITS:1 COG:SMb21462 KEGG:ns NR:ns ## COG: SMb21462 COG0524 # Protein_GI_number: 16265036 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Sinorhizobium meliloti # 4 209 49 262 311 72 32.0 6e-13 MCAGGAANQAIALARLGVPVRLHSRVGVDQMGAFVDEMLAREGVDTSSCERVGDQNVTVS LSFDGDRAMTTRGTTALPLLGGDAPACLLADVRGIGANSEVVSSWRARGTWVLADTAWDE AGAWDEADLESLLLADVCTPNEEEALAYARTESVEDAARWFASFECDCVVTCGKNGVIAC VDGQILRVPAPAVNAVDTTGAGDVFSAALAWARRARRMPWPEALALACAAAAHSTQGIGG SSSAPYAADLPGA >gi|292820925|gb|ACYT02000031.1| GENE 37 37656 - 39029 1488 457 aa, chain + ## HITS:1 COG:SMb21463 KEGG:ns NR:ns ## COG: SMb21463 COG1486 # Protein_GI_number: 16265037 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Sinorhizobium meliloti # 1 444 1 448 461 201 35.0 2e-51 MQLTIVGGGGFRVPAMIDVLARSRSGQGAYASLDVDCVVLYDTDARRLDAMMAVLSSLDF PHSPTVRATTDINEALPGADFVFSAMRVGGTCGRVLDEHCGLDHGLLGQETVGVGGYCYA FRSLGPALELARAAKRLCPGAWLINFTNPAGIITQAMRSALGERVIGICDTPIGLVNRTL NALGVPEEERTDVSFDYVGLNHLGWLRSLSVDDRDILPRLFADEEALGSMEESRAIGTGW IRALGALPNEYLFYYYCHREAMARIHQDQSRGEYLRDQQEAFYNAVLSAPEQAGRTWIDA LADREATYMAEARDVDERSGRRAEDIAGGGYQKVALDLMNALATDTPARMILNVGNGDGG FSSIPTLRDADVVEVPCDVDASGVHPIPVAPLEGAALGLVQSVKACENLVIDAARERDRS LAWQALALHPLVDSVNVARDVLDQAIRTNPLVAAAFD >gi|292820925|gb|ACYT02000031.1| GENE 38 39128 - 39823 634 231 aa, chain - ## HITS:1 COG:Cgl1059 KEGG:ns NR:ns ## COG: Cgl1059 COG2120 # Protein_GI_number: 19552309 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Corynebacterium glutamicum # 3 191 14 198 234 87 33.0 3e-17 MDTVLGIYAHPDDADVDAGGTLARFAREGSRVVVAVVTDGDAGGSDQDLHQQMGELRCDE QHRACEQLGVTELVFFDGYPDGMVTPSHGLVRDIVALIRRVKPNLILSLSPEYNWSSIYA NHPDHRAVGAAVTDAVYPAARNPFAFPELLDEGLDPHVVEEVWFQGGPLTNHVVELDQAD VEAKVRAVREHVTQFDDLDRMESWIRQGIRDAGKPHGYAGGEEFFRWDTRG >gi|292820925|gb|ACYT02000031.1| GENE 39 39892 - 41214 1690 440 aa, chain - ## HITS:1 COG:ML1770 KEGG:ns NR:ns ## COG: ML1770 COG1653 # Protein_GI_number: 15827946 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mycobacterium leprae # 8 425 17 431 446 306 41.0 6e-83 MKRRFVTATALIGAASMLMAACSQGGSASSETGTSLTLRLWDDQAAQAYEAALPEFTEET GITVNVEVVPWSDYFTGLRSELAAGTGPDVFWSNTNNYTEYARGGKIVNIDEEFPASERD GWLQGAIDQYTVDGKLYGVPVLTDPSIAVYYNKSLLDAAGVSIEDLQNLSWDPSASTDSL REITRKLTLDSSGRNAADPAFDADHIVQYGYNAALDGQAMLIPYLGSAGATLQDESGHFT FASPEGDAAVGYLVDLINKEHVAPSAADTNDNGDFSRDQFLQGKIALFQSGSYNLANVAE GASFEWGLAPQPKGPAGAVTVGNSVVAAGSTASANPEAQHKLLAWLAGKDGGAALGKTGA GFPANEKAQATWIAYWSDKGVDTSVMAKTPSGTIMAPFGAKLGAAMDAYNGVLKEVFLGR TGVHEGVQAAQDAANAAIDQ >gi|292820925|gb|ACYT02000031.1| GENE 40 41245 - 42090 1111 281 aa, chain - ## HITS:1 COG:MT2380 KEGG:ns NR:ns ## COG: MT2380 COG0395 # Protein_GI_number: 15841822 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 14 281 8 274 274 255 52.0 5e-68 MSSSKLHSRRPWWSTLGIYGGLSLAAFIMVVPLLFSFVTAFKSPQDFASHSPFALPSPPS LASFQAILTGRVNFGDAIITTLLMVVVMVVGQLVSSVLAAYAFARIEFPGREVIFWLFLG TMMIPASVLVIPLYLMMAKMGLNNTFWGIVLPFVFASPYAVFLLRQSFRQIPQEIIDAAT MDGAGQMRILFSIVVPVSKPIISTLVLITVVSQWNSFMWPRIIAATRPRVLTVATAALQS QYNANWTYVMAATTIALVPLIALFIVFQRHIVESIALTGIK >gi|292820925|gb|ACYT02000031.1| GENE 41 42077 - 42955 955 292 aa, chain - ## HITS:1 COG:ML1768 KEGG:ns NR:ns ## COG: ML1768 COG1175 # Protein_GI_number: 15827944 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Mycobacterium leprae # 9 291 45 327 328 275 50.0 9e-74 MSKRASRTRHALVGYAFLSPALIGVLIFMVVPIGVIMWVSLYRWDLIGDTRYVGLANVTN VLSDPSFLSSLRTTIFFVLLVVPIQIILGLLLANLLTKGVRGTVVYRTLIVIPWIAPPLA LGVVWSWIFAPTGGLLSALAGTRLEILVSPTWALPAAAFVVVWSNVGYTALFFIAGLLAI PRELTEAATVDGASSSQVFWHIKMPLLRPTFFFVSVTSVISVFNVFDQIYALTKGGPSGS TEVLAYLIYKEAFETGNVGRAAVMACVMMLLLMGLTLAQNLYFRKRTTYELV >gi|292820925|gb|ACYT02000031.1| GENE 42 43138 - 43569 606 143 aa, chain - ## HITS:1 COG:MT3706.1 KEGG:ns NR:ns ## COG: MT3706.1 COG0853 # Protein_GI_number: 15843213 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 3 130 1 128 139 135 55.0 3e-32 MEMTREMAIGKIHRAVVTGADLHYVGSITVDEDLLDAANIVPGQKVDIVDVNNGERLSTY TIAGERGSGTIQLNGAAAHKVSVGDLVIIMAYAQVPESLVRTIKPSVVFVDEANTIVSAG DHAGSVPEDSPRARELGLKSSGV >gi|292820925|gb|ACYT02000031.1| GENE 43 43569 - 44522 1209 317 aa, chain - ## HITS:1 COG:aq_2132 KEGG:ns NR:ns ## COG: aq_2132 COG0414 # Protein_GI_number: 15607078 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Aquifex aeolicus # 26 297 26 280 282 205 41.0 9e-53 MTHRPVLTHTRAELADALSRLHGTKALVMTMGALHSGHLQLVREARELADHVIVTIFVNP TQFAPGEDFDAYPRTLDADMDALETVGADLVWAPAPQDVYPTPATVTIDPGPIARVLEGK TRPTHFAGVALVCTKVVNLVRPDVALYGQKDAQQLAVLRTVFSQLDIPVRVHPVPIVRAE DGVALSSRNQYLSDDERIRARALSRALRRGAEAAEAGAKPAQIVAECRSVIDAEGGIEMD YIALVDAGSFEILAGTESVPVGEGTAAPTILSDGSREGRILIAAKVGTTRLIDNMEVPLR DASGSSGRLAERAGDLA >gi|292820925|gb|ACYT02000031.1| GENE 44 44655 - 45563 974 302 aa, chain - ## HITS:1 COG:Rv3603c KEGG:ns NR:ns ## COG: Rv3603c COG5495 # Protein_GI_number: 15610739 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis H37Rv # 11 243 9 257 303 145 43.0 1e-34 MIGDNGGMSTPGRLGIGIIGMGHVGPVIGSALRAVGHQIVAVSASSDASRERADAMLPGV PIATPEEVVRRSEVVIVAVPDDQIGPLVSGLADLGAWQSGHIVIHLSGASGVGLLGAAAG AGAVPLAIHPAMTFTGTSVDVARLVGTPFAVTAAAPFLPIAQALVVEMGGEPVVVAEVDR PLYHAGLAHGANFIAGITVQTTRILAEAGIENPALYVRPLLEAALDRALTEGVAGISGPA ARGDAGTIAAHARCLGAREDLAGERDTYADMTRALTRLLRDARLLDERAAASVEAALLDP GA >gi|292820925|gb|ACYT02000031.1| GENE 45 45568 - 47127 1657 519 aa, chain - ## HITS:1 COG:Cgl0622 KEGG:ns NR:ns ## COG: Cgl0622 COG3428 # Protein_GI_number: 19551872 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 13 480 5 448 471 141 28.0 3e-33 MSTDLSSDGIAPEDWKPLHPLTYVPRVAGSVAGIVGAVSLSNASAIGRMLNGETPQWFET TGIFLGLAFIAGLVLAIAGAYCYLSWTKTRYAVSNTAIWYRAGILKRTQRHARLTRIQTI NVSYSLIGRLLRLGYLDIEVAGGTDSSIKLGLLPAQRLEELRALLLALASGAIDEAVDPA DLSPASDRVATAKTPLEAPERSVFKVGFVKLLASMLATIDNAIALFFGIFLLGLNGFLVG VVGVTSIMSFLGIVAGAFSLLAGVWARFDREFGFTAAIAADGVRIDRGLTARRHVTIPPG RIHAIEVTQPLIWRLFGWYRVEITQAGNAAHTTDEKNKGMQVDVASDVLVPVGSRVEVIQ AIAMAIPDLGADDPDGFLESLRVGTGEDRWMTPIPPSARILDPLVYKRRAFGLTDAVFAI RDGFFNLRFSIIPLTRIQSVSLHQGPIQRWRRVASVRAALVPGSVASMAEHVEAGRSLQL WAQLSQASKVRREAEVPERWLSRVTEIVEATSQRAEDDK >gi|292820925|gb|ACYT02000031.1| GENE 46 47124 - 47624 805 166 aa, chain - ## HITS:1 COG:Cgl6021 KEGG:ns NR:ns ## COG: Cgl6021 COG3402 # Protein_GI_number: 19551871 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 20 166 4 149 149 90 38.0 2e-18 MSSQNAADVMSPDGVDFQHVSPKLATLRLGNALALCGALCGAISALVLIVDIPALWWLML VPAAIALFCLWLVPAQVRALRYALADTDFVIRRGVFSRSLTLVPYGRIQYVDIYQGPVLR LLGISTIKLSTASAKTDATLSGVPVADAARLRDVLAERGSAELMGL >gi|292820925|gb|ACYT02000031.1| GENE 47 47623 - 47760 65 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLQFLHIFSAPFPVLYFCATNRGDEANRSSVITPTYLTGNIQTDE >gi|292820925|gb|ACYT02000031.1| GENE 48 47771 - 48475 1091 234 aa, chain + ## HITS:1 COG:MT0782 KEGG:ns NR:ns ## COG: MT0782 COG0745 # Protein_GI_number: 15840172 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 3 231 5 237 240 261 59.0 8e-70 MSTPGTEAKLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVM LPDMDGFTVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIR AILRRTMGSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSK MQILDHVWEYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAED >gi|292820925|gb|ACYT02000031.1| GENE 49 48477 - 49943 1624 488 aa, chain + ## HITS:1 COG:Rv0758 KEGG:ns NR:ns ## COG: Rv0758 COG0642 # Protein_GI_number: 15607898 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis H37Rv # 17 486 10 467 485 254 39.0 2e-67 MHRSLAQRIEAWWDSKPLSAQLVTLITLLLAIGLSLSGTVMIGLLQRHLTSQIDDQLVAT AHTMQISGSAATFSADGQGGIPTLYYIHIHDTAGGDRYFYSEDTLKASGKPNLPELVDTS SAPISSFRTLPVTVSSSKAGLGWRALVVPVYEQDSGLFSGYMTIALPLSDMQHTLRTTAS YFAVAGIIIVLIGGWTGRVLVRRALLPLRSIESTAGKIAAGDLTKRVTPHPATTEVGSLS LSLNAMLTQVEQSFEARQASEQKIKRFVSDASHELRTPLAAISGYCELYAMGGVPAERIE EVMGRIASESSRMATLVEDLLTLARLDEGRPLEITDIDLVKLADNAVFDLQALDPTRTVG LTGINSRTPPMTLIVPGDRDRLSQVFTNLIGNIVRYTPEGSPVEIALGRSGDTAIVELRD HGPGIDETDRGRVFERFYRADTSRNRKSGGSGLGLAIVSGILTAHRGNASLTKTKGGGLT VRIELPTA >gi|292820925|gb|ACYT02000031.1| GENE 50 50119 - 51081 1180 320 aa, chain + ## HITS:1 COG:all0539 KEGG:ns NR:ns ## COG: all0539 COG4339 # Protein_GI_number: 17228035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 36 222 33 209 212 88 29.0 1e-17 MGAQAPQWLLTSFVDAMQQIGATATQSDLETESIDLAERWSAPERQLHNVRRLMNTLTHI DEISSSAHDPDILRVAAWYHGAFLNKALDIKLGGFQANFASTRCIDHAHNRLTNLGVPEE VVARIDELIAFLTRHRAPRTDFDAQVLVDADLAVLACSPQDYKKLRTSLRAELSELDDLQ FTKARMALVKKLLSYETIYQSPLGSAWEDTARANLEVELTRLERENAQLCQAAQAEDTDD TEDADDTDEVVEDSTTTTGTLIIKRRSIKKCIPVASPDDEATSTGVLPRKIEEDTDSDED EEATSSLESAVESLDLPTSD >gi|292820925|gb|ACYT02000031.1| GENE 51 51301 - 51594 411 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154507919|ref|ZP_02043561.1| ## NR: gi|154507919|ref|ZP_02043561.1| hypothetical protein ACTODO_00404 [Actinomyces odontolyticus ATCC 17982] # 1 97 20 116 116 110 100.0 2e-23 MTAYAVDAEQIAAASAQACTTASTIRTEVDTMMAQLLALQDTWTGGAQVNFQATITQWQG IQAQTHDALDAISSQMQVAASTYADAETHSASLFAGV >gi|292820925|gb|ACYT02000031.1| GENE 52 51727 - 53355 1605 542 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 540 547 622 60 1e-177 MSKIIKFDEDARRGMENGLNLLADTVKVTLGPKGRNVVLDKKWGAPTITKDGVSVAKEID LDDPFERIGAELVKEVAKKTDDVAGDGTTTATVLAQALVHEGLRNVAAGSNPIALKRGID QAVEAIVEQLHVDAKPVETTEQIAATASISANDPAIGKLIAEAFEKVGAEGVVTVEETNS FDTTLETTEGMRFDKGYLSAYFVTDQERQEAVLEDAYVLLMDSKISNVKDIVPVLEKVMQ TGKPLAIIAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGERRKAMLQDMAILTGGQVIS ETVGLSLENADLELLGRARKIVVSKDETTIVEGAGDKDMLDARVRQIRQEIENTDSDYDR EKLQERLAKLAGGVAVIKSGAATEVELKERKHRIEDAVRNARAASEEGLVAGGGVALIQA ATVALPKLDALTGDEATGVNIVRLAISAPLKQIAENAGVEGGVVADRVANMEPGHGLNAA TGEYTDLMAAGISDPVKVTRSALQNAASIAGMFLTTEAVVADKPEAPAAGGDDAGAGMGG MY >gi|292820925|gb|ACYT02000031.1| GENE 53 53665 - 53886 56 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTPPPADNGCFHGLFGEQWCRGFQVSDDRRLQRRHWFHMPDACPVDRAGACAHGVPGAVV PGRCVCRWAAARP >gi|292820925|gb|ACYT02000031.1| GENE 54 54238 - 54618 233 126 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTPLLAPKMGPVKPASPLRPKTAPKTPISHPQRRRRFHSHTGTREQRRWQFHSHTGTREQ RRSRFQTTATPRLQHTRAESVGGTGMKEKTPMPQLLRCTVKHYSPQHTQKGQFSTIVSTH GRFLFQ >gi|292820925|gb|ACYT02000031.1| GENE 55 54939 - 55517 637 192 aa, chain - ## HITS:1 COG:no KEGG:Bcav_0815 NR:ns ## KEGG: Bcav_0815 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 5 192 8 184 189 87 34.0 3e-16 MSSQYPRDEFDRTGEDMPVGMHRPKPSKWKNVWPFLAILVIVPALGWAAATALSRQQATV SNVPSPAATTPSAAAPSASPTAEATASAEPTPSASSSSPSASSEPDHGAVIQVLNGTGTQ GYAGQQAQILNQAGYAGTSAANADGWATQTSTVFYEDPRMEATAKDVAAKLGISNVRQES GLGDPDIIVILR >gi|292820925|gb|ACYT02000031.1| GENE 56 55604 - 56314 479 236 aa, chain + ## HITS:1 COG:ML1675 KEGG:ns NR:ns ## COG: ML1675 COG0692 # Protein_GI_number: 15827886 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Mycobacterium leprae # 7 232 4 226 227 260 61.0 1e-69 MGEHNPRPLAELIDPGWAQALAPVEGRVHELGAMLAAEVKAGHGYLPAGTDVLRAFTYPF NKVKVLIVGQDPYPTPGHAMGLSFSVHPGVALPKSLINIFRELSEDMGVPAPTSGDLTPW CEQGVCLLNRVLTVRPGAPASHRGRGWEEVTQCAIDALVSRKRSDGSRAALVAILWGKDA QSLTPRLGDTPTIASAHPSPLSAYRGFFGSKPFSRANELLEAQGASGVDWSLGASH >gi|292820925|gb|ACYT02000031.1| GENE 57 56673 - 57605 1330 310 aa, chain - ## HITS:1 COG:no KEGG:Arch_1641 NR:ns ## KEGG: Arch_1641 # Name: not_defined # Def: DsbA oxidoreductase # Organism: A.haemolyticum # Pathway: not_defined # 13 219 24 228 282 79 27.0 1e-13 MAQKKKPAVDPVRAKAAQMRQAQERADRRTRIIVISAVAVIVLAVVAAVGGVIWKQQAQV NAARNVDASDVLGAYADGRPIIVNANGVVAEADPNLPTLTEYFDYSCHACADLDAYLGED LTTWAAEGHYNLELQPVITVNMDYLKPAASASLVVAQKAPDKWVDFHHALLAYFRTQYQA SNGTVVQNLDASWKQVKVIAAEVGVPSDVIDTFPVNAVEDYLKASTTAWRNAGYNGRGDG LGTPELIKDRSTVIPLGTQLPALRETIAQEYGITDSASQGTSQTPAPEATEPSQSGADEG QSSETTDSSN >gi|292820925|gb|ACYT02000031.1| GENE 58 57666 - 59597 1093 643 aa, chain - ## HITS:1 COG:MYPU_6850 KEGG:ns NR:ns ## COG: MYPU_6850 COG0515 # Protein_GI_number: 15829156 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycoplasma pulmonis # 5 247 4 252 320 126 32.0 2e-28 MEEGEELGGYRLIRRLGTGGAGTVWLAEDGGGTRVALKAMHPAMAASEESRQRLERETRT VNSVRSPFVAHIVDAETEASQPFVVSEYVEGPTLAEIVVSGPVPLRGVAALSYHLASTIA AVHHANIIHRDIKPSNIICSPRGPVLIDFGIAMATSDQHLTSTGLVSGTAGYTAPELLQG HGATKESDWWAWCATLLSCATGRPPFGKGDVSATMLRVLEGDPDLAGLHPMVADALAGGL APDPDERPSPSLIVADLMSAVGWAPGELDYVTVNWAQLLDTGMRTQMVNSDPQEIAAPPE WEDAGQRPDASGARAVSYPQHPRRDASEFTAANDHTEVVDIASVAEGYGAWEDESAEVAW HDDATDTWQAVDDADPTEVLAPYPQAPYAHPQGAYGPGPGVAPGPAQQPYPQAGFVTPPV GAVPQWNPSPAAGVVGAHDETASSPKKKNAWISGAAVLALLASLPFVLGMSGTLIVGIAL TAFGLVGAMSRWVERRRILRGPRPSDGAAVIAMSPILLARSIVTTALGLVVGGLIPYLVW AGVSYSYEGRVLWTWPVDVATSSGLDRSDYWLSDPRGTITVWALAAATIWAAWLMPFAAD LRVGTATSLRAIVRPAWGRALLTVGCGGFLAGAWLIVTGGLSH >gi|292820925|gb|ACYT02000031.1| GENE 59 59859 - 60989 1974 376 aa, chain + ## HITS:1 COG:Cgl2410 KEGG:ns NR:ns ## COG: Cgl2410 COG3839 # Protein_GI_number: 19553660 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Corynebacterium glutamicum # 1 375 1 376 376 494 70.0 1e-139 MATVTFDKATRVYPGSDKPAVDQLDLEIKDGEFLVLVGPSGCGKSTSLRMLAGLEDVNSG RILIGDKDVTDVPPKNRDIAMVFQNYALYPHMSVRENMGFALKIAGTPKEEINKRVEEAA KILDLEPYLDRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVQTRTQIAS LQRELGVTTVYVTHDQTEALTMGDRIAVLAGGLLQQCGTPQEMYERPANEFVAGFIGSPA MNLGTFTVEGEWAKLGPARVRVSEAARAAMTPEDGGKIKIGFRPEGLDVVADGSEGSIPV EVDFVEELGSDAYVYGHLAGAAEGETLGSGSEGTGKQLIVRVPPRTAPARGGVLHVRIRE GQQHNFSAATGVRLPE >gi|292820925|gb|ACYT02000031.1| GENE 60 61154 - 62416 1281 420 aa, chain + ## HITS:1 COG:no KEGG:Arch_1644 NR:ns ## KEGG: Arch_1644 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 3 402 24 423 435 506 63.0 1e-142 MALDITAAAIDPALLDLPWDVPLEEWPSNLLAALPRGISRHIVRFVNLSGRVLAVKEIGP TVAHHEYDCLRDLTRLNAPSVQPVAVITGRESPEGEELNAVLITEHLQFSLPYRALFSLS MREDTATRLIDALALLLVRLHLLGFYWGDVSLSNTLFRRDAGEFAAYLVDAETGELHPKL TPGQREYDVDLARTNIIGELMDLQAGGFFPEDADPIDVGDRIRTQYDLLWTEVTAEESIP NEQRQYLVSERIRRLNDLGFDVAELHMASDSSGEHLVIQPKVVDAGHHNRKFMRLTGMDV GEHQAARLLADIDVWRATSGLQDIPLEQAAHEWITDVFTPVVRAIPRELAGKLEPAQLYH EYLEHRWYMAQQAGHDIPGEEAVASYIENILPSKRDEAVLIEPGPGRASMLSAEANPDLW >gi|292820925|gb|ACYT02000031.1| GENE 61 62457 - 63200 954 247 aa, chain + ## HITS:1 COG:ugpQ KEGG:ns NR:ns ## COG: ugpQ COG0584 # Protein_GI_number: 16131321 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 4 235 6 235 247 156 37.0 3e-38 MSEFPRIFAHRGASSLAPENTIAAFAKAMEVGARWFEFDVDITGDGSLIVIHDDTLDRTT TGSGSYYQLGFADIRRLDAGRWFSDTYRFERIPEAADALAFAHAQQMGANLEIKPCAGGD RLRERLIDALAVTLAGDKVPSELIVSSFDHDLLAAFHEACPTVALGWLIERASEEWREGA AALGATAIHPGVEGLTEPDVRAMRDAGFEVNVWTVNDVDQARELASWGVTGIFTDRPQDF PAEALKA >gi|292820925|gb|ACYT02000031.1| GENE 62 63344 - 64549 1553 401 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190406|ref|ZP_06608838.1| ## NR: gi|293190406|ref|ZP_06608838.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 401 1 401 401 728 100.0 0 MAQEWTRIEGMIIGHDLDPSVVAGELKERSILAQLEWFPSSPQLLGLNVAVGSERVATVP AGSTEVVPGPTPAELANELAILFDAEVRIGNATADHLPEGDSPLGKVWPSDEEEAAAVEP TPTRIVEIGRTPASSVPLLAALEGVDLGDLELADDHRALLAELPAEKEGWNFGDLPLVTL SVTDGEFQVFLVTDDHLEHIISHNWGMDAAIVPGGHDRTSELPGEVIDLVGDRLDLLEIA EAVPGSDADALWASVATTGEESVWKVVRALGLHGSVAGFLLGTTDLEDVEGVSVHLARGI SNAIGRSVDIMMGQPQSVVKPLWNSYESVAVERPWIIHAAVAAEAIGGTGMLVAAVRASS PRSGWMRFAGIVGGLMVVDSIAELSLAKHVSKRFTRRAGEA >gi|292820925|gb|ACYT02000031.1| GENE 63 64608 - 64739 83 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRIAFSLGRTVSDENLYHCAGTYLVRSSCMILRCLLLASRGKE >gi|292820925|gb|ACYT02000031.1| GENE 64 65086 - 66111 1705 341 aa, chain - ## HITS:1 COG:Cgl2712 KEGG:ns NR:ns ## COG: Cgl2712 COG0191 # Protein_GI_number: 19553962 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Corynebacterium glutamicum # 1 337 1 339 344 421 65.0 1e-118 MPIATPEVYAEMLNRARDGKFAYPAINVTSSQTITAALQGFAEAESDGIIQVSVGGAEYG SGSTIKNRVTGSLALAAYAYEVAKNYGITVALHTDHCAKQNIDSWVRPLLEIEAGQVAEG KLPTFQSHMWDGSAIPLDENLEIAKELLALSVKANTILEIEVGAVGGEEDGVVGEINEKL YTSTADGIKTVEALGLGEKGRYITALTFGNVHGAYKPGHVKLRPELLGTIQKEVAEHFGL DHRPFDLVMHGGSGSTAEEIATAVANGVIKMNVDTDTQYAFTRPVVDHMMRNYDGVLKID GEVGVKKQYDPRTWGKSAEAGMAARVVEACERLGSAGTQMR >gi|292820925|gb|ACYT02000031.1| GENE 65 66431 - 67225 1225 264 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190408|ref|ZP_06608840.1| ## NR: gi|293190408|ref|ZP_06608840.1| beta-N-acetylhexosaminidase [Actinomyces odontolyticus F0309] # 1 264 1 264 264 512 100.0 1e-143 MTSHLNAQAASQVPGTIPSLKGWAPASNALTLTINASRTDLGDEGHQLTVNANGAEVVAA NRSGLLWGARTIEQAVRTGQGTVPAGSITDIPRFADRGATLCACGTHITPDWITRQIDRM PDLKMNYLSLELRIKSDKYPVAQQFPFDRIDEYMEAFGSTEWHMGADEFFFKQGPGDFKK YLAQIRSHYGAQMFWNTKTPKADGNAEAFKARIKAEAAAADSVETRWERGKESMATDGDP ATYWHSQYIDANKAKLPGTDNARK >gi|292820925|gb|ACYT02000031.1| GENE 66 67555 - 68250 495 231 aa, chain - ## HITS:1 COG:Cgl2714 KEGG:ns NR:ns ## COG: Cgl2714 COG0566 # Protein_GI_number: 19553964 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Corynebacterium glutamicum # 29 220 1 194 206 169 48.0 6e-42 MNEFENGCDIARDGACGNDEAWAAQSGQVGVGPWPGGEAAWPVGEYYDRELLKAGDRRNV EDRYRYWTMDAIRADIAARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGRKRWN RRGAMVTDRYLPVDHRPEVRELVEHCSKEGLTLVGVDNVEGSVALEGAVLPERACLVFGS EASGLSEEMIRACDIVVAITQRGSTRSMNVGHAAAIVMWAHASRLEGAETS >gi|292820925|gb|ACYT02000031.1| GENE 67 68285 - 69106 1118 273 aa, chain + ## HITS:1 COG:Cgl2203 KEGG:ns NR:ns ## COG: Cgl2203 COG0647 # Protein_GI_number: 19553453 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Corynebacterium glutamicum # 19 267 6 254 275 309 61.0 5e-84 MTALTHEPTPLTDLPPVTAWLSDMDGVLVKENRALPGANEFLAALRGKNIPFLVLTNNSV FTNRDLSARLANSGLDIPEENIWTSANATAAFLHQQSPGSTAYVIGEAGLTTAIHSAGYV MTEIDPEFVVLGEVRSYDFHALTHAIRLIEGGAKFIATNPDVSGPSDEGTLPACGAIAAM ITAATGQKPYFVGKPNPVMIRAGLNKIGAHSESAAMVGDRMDTDVRAGVEAGLRTHLVLS GSTAREDINNFPFRPFGIHEGIGDLIELVEAAH >gi|292820925|gb|ACYT02000031.1| GENE 68 69133 - 69702 892 189 aa, chain + ## HITS:1 COG:Cgl2715 KEGG:ns NR:ns ## COG: Cgl2715 COG0461 # Protein_GI_number: 19553965 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Corynebacterium glutamicum # 3 177 7 172 184 175 59.0 5e-44 MTNDSHKARLATLVQELSVIHEKVTLASGRESDFYVDMRRSTLHHEAAPLIGHVMLDLLE ESGFAVGEEYVAVGGLTMGADPVATAMMHAAASRGLDLDAFVVRKAAKDHGMKRRIEGPD VVGKNVVVLEDTSTTGGSPLEAALTLREAGANVVAVAVIVDRATGAKERIEAEGFPYFYA LGLEDIGLA >gi|292820925|gb|ACYT02000031.1| GENE 69 69780 - 70568 888 262 aa, chain - ## HITS:1 COG:PA0658 KEGG:ns NR:ns ## COG: PA0658 COG0300 # Protein_GI_number: 15595855 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Pseudomonas aeruginosa # 4 254 5 250 266 137 38.0 2e-32 MGTALVTGATSGIGEEFCWQLAAAGHDLVLVARNEDALCALADSLANVAGVRAEVIAADL STDSGCGRVAARLDVGGPAERDKPDLAPVDLLVNNAGFGLGTEFLDNSLENEIKGLNVMV RAVMTLAHHAGISMRSRGRGAILNVGSVASRTGAGTYSAHKAWVVAFTEGLAAELKGSGI TATVVCPGPVDTPFFERAGVDMRATPSWLMASPEQVVTEALDAVRAGRVQVTPTIPYKVA MGTMKLAPRWVTARAMRSVPHM >gi|292820925|gb|ACYT02000031.1| GENE 70 70650 - 71126 353 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507937|ref|ZP_02043579.1| ## NR: gi|154507937|ref|ZP_02043579.1| hypothetical protein ACTODO_00423 [Actinomyces odontolyticus ATCC 17982] # 4 158 835 989 989 148 94.0 9e-35 MPRPFPSPAPTGGPVRVPAAPATNAGTPASSGATRSAAPAATGGSATGTPAARSNGAASG TTGAASSAPVTAPKAVPAPAPSASPSAAPQSGAQSGEVAQSGGVPAPENGTADASGAMPI AAAAETGRSGGWSPYWLVLLVIPAALAGGGAGYLIRTR Prediction of potential genes in microbial genomes Time: Tue May 17 06:30:15 2011 Seq name: gi|292820870|gb|ACYT02000032.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.1, whole genome shotgun sequence Length of sequence - 58595 bp Number of predicted genes - 52, with homology - 51 Number of transcription units - 22, operones - 11 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 234 99 ## Elen_1126 transposase and inactivated derivative - Prom 318 - 377 1.9 - Term 401 - 461 16.0 2 2 Op 1 . - CDS 507 - 938 805 ## COG1764 Predicted redox protein, regulator of disulfide bond formation 3 2 Op 2 . - CDS 1049 - 1570 748 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 4 2 Op 3 . - CDS 1589 - 3163 1819 ## COG2985 Predicted permease + Prom 3193 - 3252 1.8 5 3 Op 1 . + CDS 3274 - 3762 518 ## gi|293190464|ref|ZP_06608851.1| protein transport protein SEC31 6 3 Op 2 . + CDS 3759 - 4472 624 ## gi|293190465|ref|ZP_06608852.1| putative 3-demethylubiquinone-9 3-methyltransferase 7 3 Op 3 . + CDS 4518 - 5081 604 ## gi|293190466|ref|ZP_06608853.1| fibronectin-binding protein 8 3 Op 4 . + CDS 5078 - 5770 816 ## gi|293190467|ref|ZP_06608854.1| conserved hypothetical protein 9 3 Op 5 . + CDS 5855 - 6175 398 ## gi|293190468|ref|ZP_06608855.1| putative small transmembrane and glycosylated protein 10 3 Op 6 . + CDS 6172 - 6885 873 ## gi|293190469|ref|ZP_06608856.1| hypothetical protein HMPREF0970_01187 11 4 Op 1 . - CDS 7014 - 7436 555 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 12 4 Op 2 . - CDS 7446 - 10169 2744 ## Xcel_0699 protein of unknown function DUF214 13 4 Op 3 1/0.000 - CDS 10169 - 10876 239 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 14 4 Op 4 . - CDS 10903 - 11511 635 ## COG1695 Predicted transcriptional regulators - Prom 11614 - 11673 3.7 15 5 Tu 1 . - CDS 11903 - 12046 64 ## gi|154507974|ref|ZP_02043616.1| hypothetical protein ACTODO_00460 16 6 Op 1 . + CDS 12147 - 13025 995 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 17 6 Op 2 . + CDS 13045 - 14364 1271 ## COG1085 Galactose-1-phosphate uridylyltransferase - Term 14320 - 14369 12.7 18 7 Tu 1 . - CDS 14391 - 15683 1259 ## COG4143 ABC-type thiamine transport system, periplasmic component 19 8 Tu 1 . + CDS 15824 - 16102 478 ## gi|293190478|ref|ZP_06608865.1| conserved hypothetical protein 20 9 Tu 1 . - CDS 16133 - 16501 305 ## Krad_4042 hypothetical protein 21 10 Tu 1 . + CDS 16601 - 17509 998 ## gi|293190480|ref|ZP_06608867.1| cytochrome C oxidase subunit IV + Term 17695 - 17735 8.0 22 11 Tu 1 . - CDS 17750 - 18517 1000 ## COG1183 Phosphatidylserine synthase - Prom 18548 - 18607 1.7 23 12 Tu 1 . + CDS 18878 - 19321 139 ## - Term 20039 - 20105 14.4 24 13 Op 1 9/0.000 - CDS 20122 - 22479 3349 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 25 13 Op 2 23/0.000 - CDS 22549 - 23256 1012 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 26 13 Op 3 15/0.000 - CDS 23253 - 23534 413 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 27 13 Op 4 . - CDS 23599 - 24600 1524 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 28 13 Op 5 . - CDS 24620 - 25954 1637 ## COG0151 Phosphoribosylamine-glycine ligase 29 13 Op 6 . - CDS 26047 - 27084 1383 ## gi|293190489|ref|ZP_06608876.1| putative tetratricopeptide repeat-containing domain protein 30 13 Op 7 . - CDS 27074 - 28108 1288 ## Bcav_3961 von Willebrand factor type A 31 13 Op 8 . - CDS 28110 - 29126 1185 ## Bcav_3960 von Willebrand factor type A 32 13 Op 9 . - CDS 29123 - 29635 524 ## gi|293190492|ref|ZP_06608879.1| conserved hypothetical protein 33 14 Op 1 1/0.000 - CDS 29890 - 30744 986 ## COG3764 Sortase (surface protein transpeptidase) 34 14 Op 2 . - CDS 30885 - 33767 3772 ## COG4932 Predicted outer membrane protein 35 15 Tu 1 . - CDS 33925 - 35541 2449 ## DIP2226 surface-anchored fimbrial subunit - Prom 35619 - 35678 2.2 36 16 Op 1 23/0.000 - CDS 35741 - 36634 756 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 37 16 Op 2 . - CDS 36675 - 37664 1025 ## COG0714 MoxR-like ATPases - Prom 37698 - 37757 2.0 - Term 37791 - 37842 23.4 38 17 Tu 1 . - CDS 37870 - 39705 2736 ## COG1274 Phosphoenolpyruvate carboxykinase (GTP) 39 18 Op 1 21/0.000 + CDS 40077 - 40709 1092 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 40 18 Op 2 . + CDS 40713 - 41777 1628 ## COG0306 Phosphate/sulphate permeases 41 18 Op 3 . + CDS 41777 - 42214 401 ## Bcav_3422 hypothetical protein + Term 42235 - 42290 21.7 42 19 Op 1 . - CDS 42397 - 43656 1255 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 43 19 Op 2 . - CDS 43782 - 44411 738 ## HMPREF0573_10438 hypothetical protein - Prom 44460 - 44519 74.8 + TRNA 44443 - 44514 82.0 # Lys TTT 0 0 + Prom 44441 - 44500 74.5 44 20 Op 1 . + CDS 44584 - 46689 1034 ## COG1397 ADP-ribosylglycohydrolase 45 20 Op 2 . + CDS 46693 - 48660 773 ## PFREUD_02780 carbohydrate kinase, PfkB 46 20 Op 3 . + CDS 48676 - 51534 1032 ## HMPREF0424_0289 ADP-ribosylglycohydrolase 47 20 Op 4 4/0.000 + CDS 51546 - 52619 853 ## COG0524 Sugar kinases, ribokinase family 48 20 Op 5 . + CDS 52759 - 54003 1473 ## COG0477 Permeases of the major facilitator superfamily + Term 54204 - 54251 1.8 49 21 Op 1 . - CDS 54374 - 55234 978 ## COG5006 Predicted permease, DMT superfamily 50 21 Op 2 . - CDS 55248 - 55652 537 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 51 21 Op 3 . - CDS 55734 - 56750 799 ## gi|293190512|ref|ZP_06608899.1| putative integral membrane protein 52 22 Tu 1 . - CDS 56865 - 58595 171 ## PROTEIN SUPPORTED gi|225091923|ref|YP_002661910.1| ribosomal protein S2 Predicted protein(s) >gi|292820870|gb|ACYT02000032.1| GENE 1 3 - 234 99 77 aa, chain - ## HITS:1 COG:no KEGG:Elen_1126 NR:ns ## KEGG: Elen_1126 # Name: not_defined # Def: transposase and inactivated derivative # Organism: E.lenta # Pathway: not_defined # 1 77 55 132 167 97 73.0 2e-19 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGGAQALKPK PKGRPKGSVRAVPPTRE >gi|292820870|gb|ACYT02000032.1| GENE 2 507 - 938 805 143 aa, chain - ## HITS:1 COG:Cgl0024 KEGG:ns NR:ns ## COG: Cgl0024 COG1764 # Protein_GI_number: 19551274 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Corynebacterium glutamicum # 7 140 33 168 172 101 44.0 4e-22 MDTPNEIVYAVTADSTGGRAGTSTVPALGISHVMRAPKELGGPGDGPNPEALFAMGYGAC FQGAMGLAAKELGIDTKDSVVRTTIGLGPEGDSFALTADIKVFIPGVELDRAQALVDRAH QLCPYSKATRGNVPVTVTAVAAL >gi|292820870|gb|ACYT02000032.1| GENE 3 1049 - 1570 748 173 aa, chain - ## HITS:1 COG:Cgl2168 KEGG:ns NR:ns ## COG: Cgl2168 COG0494 # Protein_GI_number: 19553418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 1 163 1 158 178 116 40.0 2e-26 MATPDFVLELRRHVGHAPLWMPGTTVVILRPAPGQVAIDWERPIAPEAVEILCVRRSDNG AWTPVTGIVDPGEEPAIAAAREALEEADVRIEVRRLLSVEVVGPVTYYNGDVTTYLDVAF AAQWVSGEPSPADGENSETTFFRGDQLPPMKDRFRRAVAKALSARPDADFLTA >gi|292820870|gb|ACYT02000032.1| GENE 4 1589 - 3163 1819 524 aa, chain - ## HITS:1 COG:Cgl2162 KEGG:ns NR:ns ## COG: Cgl2162 COG2985 # Protein_GI_number: 19553412 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Corynebacterium glutamicum # 3 515 2 529 539 239 32.0 7e-63 MASLFASSPLLALFVVVALGAAIGAIRIGPLRFGAAGALFVGLTVSALHPEVVSTHMSIV QPMGLAFFVYCVGISAGATFFQDLRKQTNLLALTTIVCVVGALIALVGGRLLGLSSGLTS GLFTGALTAAPALDTATRLTGDPNAAVGYAFGYPVGVIGGILIVTITVTRKWVGPKDTPS LAGSSLEAVSIHVSKHINTRDIDAWRDQRVRLSYLRRDGRTRVIAPGEDLLPGDHVVMVG DPASIKEAAPLVGEILDHNLEDDRSDLAFERIVVSNPDVAGRSVSELNVTKRFGAVITRV RRGDLDLLARDDLDLQLGDHVAVVVPTDELDDIAEWLGDSERRVAEVDGMAFGIGLVLGL LLGIVSFPLPDGQGFQLGAAAGPLIVGMLLGALRRTGPLVWTLPAAANLTIRQIGLMLFL AALGLNAGPQFASLLGSPEGWRAALLAAVMVVVCCVIQALGAKFIGLSSARAAGGIAGFL GQPAVLQAADARVTDERIEAAYATLFAFAIIVKILLLPLITSFL >gi|292820870|gb|ACYT02000032.1| GENE 5 3274 - 3762 518 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190464|ref|ZP_06608851.1| ## NR: gi|293190464|ref|ZP_06608851.1| protein transport protein SEC31 [Actinomyces odontolyticus F0309] # 33 162 1 130 130 229 100.0 3e-59 MSQPAPGWYPDPAGSQRLRWWSGGEWTEQFHDMPQRGAPVTQQTPADQTAGHYMPAQSQA PTVSSDPYNPSGVAPQLGAAGMGPQAGDAAPKSGRGWVIGAIVSVLLMVVFFGTMVYAGI QLRAQNVEWRDVQDQRNSTKISLDHKQDELDKVKKELEEAQK >gi|292820870|gb|ACYT02000032.1| GENE 6 3759 - 4472 624 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190465|ref|ZP_06608852.1| ## NR: gi|293190465|ref|ZP_06608852.1| putative 3-demethylubiquinone-9 3-methyltransferase [Actinomyces odontolyticus F0309] # 1 237 1 237 237 407 100.0 1e-112 MSYGVQPPAKKPSSLPRILTIICSVLAVIFLLVSATMYVSARSKAQEIEDMRAEIQSADA KTVEIDSEITSTQEQIAAAKAKKDAEEWCTDFDKDSMKVTDLDKMATTLKTMSEPQRNAV GEVCGGKKAFAEAFAKDLKRGMVNTSTPTCNGDGTTVTISGTVSLDAPTLAQIGSIDVVY EVFAANHEISDSDSPLGTTTAAVPPGGTGNFSTTVPFATTGDFYCAVRVKSIWPTGL >gi|292820870|gb|ACYT02000032.1| GENE 7 4518 - 5081 604 187 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190466|ref|ZP_06608853.1| ## NR: gi|293190466|ref|ZP_06608853.1| fibronectin-binding protein [Actinomyces odontolyticus F0309] # 1 187 1 187 187 283 100.0 5e-75 MTEPAEGWYADPSGTNQLRWWDGHAWTDYVEPYEAPAPSPEDVEVAVPAVDEAFPASSPE ERAVTSAGTPIPMPEASLPQEVTPASSVAEAPVAPIPMPGSPVDEKDSNETDAPEKSGTL KWVLACAASWVLVAVFITVLVIVWSHLGASGRIQENAKSRAETAQSELDTARSTLESINQ QLQEATK >gi|292820870|gb|ACYT02000032.1| GENE 8 5078 - 5770 816 230 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190467|ref|ZP_06608854.1| ## NR: gi|293190467|ref|ZP_06608854.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 230 1 230 230 352 100.0 1e-95 MSAPAPLRAATVAGAILATAFIVLSAIVGGINAWRTHSASTYEAQAEQAQSDKAAVDQQI TEAKAALDAATVRKDAESWCDSITRESAASIRDSLKTYDSATQATKDAIHEQCAAKETLA QVYRTNKDADFTIAVGECTTDQVTTTVNGTLTLKDSSLIASLGTLDVEINGFTADKGKNP SPGSPYQGTTTITLTPGSPATFTLSIPYDPAMTDKTECGATMTSWWPSNL >gi|292820870|gb|ACYT02000032.1| GENE 9 5855 - 6175 398 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190468|ref|ZP_06608855.1| ## NR: gi|293190468|ref|ZP_06608855.1| putative small transmembrane and glycosylated protein [Actinomyces odontolyticus F0309] # 23 106 1 84 84 97 98.0 3e-19 MSTPPPILPQEPAGIPVPPAGQVPTAPSPAVAAATPTFTPLTAPRPRATGGQIAIAVITS VLVVLFAITTLMAAGIYSMKSKDLTETQEELSTVQQELQEAQEAAK >gi|292820870|gb|ACYT02000032.1| GENE 10 6172 - 6885 873 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190469|ref|ZP_06608856.1| ## NR: gi|293190469|ref|ZP_06608856.1| hypothetical protein HMPREF0970_01187 [Actinomyces odontolyticus F0309] # 1 237 1 237 237 365 100.0 1e-100 MSDNNIPTPAATTPAPVTVATKAPKSKGLSIYNRVALVLLLVLVIATTTLFTFAVQKTKA QKDMQDEIQTLTEQKDALAAPAWCAQVTPDNTDKVDELYSTYDRMSSAAQEAVKKECKDR VDAVQLLKFNDAENAFTIDSTCELDDAQTTLHCSVDVSPASDTMKTKLEAFQTTDLTLKI WFDESQFVLGTPDHVVDDVATATMTKGEKVSVDFTLPFDTSWGSHYKVEVAKYFPNM >gi|292820870|gb|ACYT02000032.1| GENE 11 7014 - 7436 555 140 aa, chain - ## HITS:1 COG:Cgl2072 KEGG:ns NR:ns ## COG: Cgl2072 COG1188 # Protein_GI_number: 19553322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Corynebacterium glutamicum # 20 133 9 124 126 86 43.0 1e-17 MSEIPEEVVIPAGALASSAVRVDTWLWATRQLKSRSQATAAVRAGHVRVNGEPVKAAYKV RVGDEVRLRIEGFDRILGVNLLLNKRVSYPQARIAYDDRTPERPRVHIPVAMREKGSGRP TKKERRELDRLRGYDSHEHY >gi|292820870|gb|ACYT02000032.1| GENE 12 7446 - 10169 2744 907 aa, chain - ## HITS:1 COG:no KEGG:Xcel_0699 NR:ns ## KEGG: Xcel_0699 # Name: not_defined # Def: protein of unknown function DUF214 # Organism: X.cellulosilytica # Pathway: not_defined # 10 874 31 902 934 132 25.0 5e-29 MSRLNTRMRRWGVVLRIASRDARQSLGRTLTAVFLISLPIIIAIGSITFWDVTTSQRYQA ASWLGHRSDVQAVTLRRSSTAIEQDITADFLSKTASDEEVTVTQSTLTNWVPAGDQLIAV DTLYQLHLTTQDGTGYTVDSGTQTATLDAPRVNASGKSGALAANHAVISDDVARALKAEV GDTLTLSLTVAKDRTTQDLTGSIVIDEIIPGTNRAIIGEGTLEIDRLAVAGRTQTAWFVT GPTPVTWDNVHQINQSGFSVVSRQVLADPPDASALPAQLAQYEVDQNNRATNPWQYLLLV ASILLILTEMILLISPLYTVAQRSVMRTAAMIVANGGDQSDGRRLTIAHGLVIGLYSGLV SVALSACGMVGIGIWSGLGIGIVPWWPLALSVLLPILLSLMASVSPAHTSSHINTSAVIG GRVWEPSRLVRRRMIYPLALLAGLPLLGIAAWRGWVLALVVGVGLLEAGLIGSIPYIFTR WRVPNRRASMSMRLALRDAVRNGHRTFPAMASILTTVFVACGLLITLSSSNEAGWNSRPH AGQRGQVFLSTVDKTDSVTRTRNLLQSAQQVVDAERTVTSSAIMNGMAWNSGPGGPETMV EAVNPIDKSTLTMRNDMGTMAEIDVAYIVDDGTYLREAGYLNEDEMVRAIATLNAGGVLV PDPKLVNGAGQADLRSLDMSAIAAAKAAGASDDDLPDALVQRTMTFPASPLTRINVMVLS PQASEALGLRAVPLGELLTVEKPVNLVDAPTFQTTIARQVPGASAQVIAPTMRSLVLPYV AALIAVVAAAATVALVVALSSSDMRPDLDTLDAIGAVPSMRRHVTTWQGVVLALNAIPTA VLSGLVVGVLAVITFANSGIFPTLTTTLRPIIPWGALLGMLIGMPILCALVAIILTPRHQ KRIRRIN >gi|292820870|gb|ACYT02000032.1| GENE 13 10169 - 10876 239 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 15 224 35 249 329 96 32 3e-19 MAGVGHEFGADGVRVRALDGIDLEVAPGELLAVMGPSGSGKSTLLSIAGGLERPTRGSVF INGVDMATMDAAHRAAVRRRSIGYVFQDYNLIPSLSALENVEMPLQLDGVSPSKVREAAM AALEEVGVAELADRFPERLSGGQRQRIAIARGLVGSRSVILADEPTGALDSHTSDQILLV LRDHIDAGAAGILVTHEARMAAWADRTVFLRDGRIVDRSRGDSLRDLLADTAPRI >gi|292820870|gb|ACYT02000032.1| GENE 14 10903 - 11511 635 202 aa, chain - ## HITS:1 COG:Cgl0834 KEGG:ns NR:ns ## COG: Cgl0834 COG1695 # Protein_GI_number: 19552084 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 166 1 166 169 108 38.0 7e-24 MSVRNALLALVAQQPAGVYRLKQMFEEQTCGAWPLNIGQVYQTMQRLERDGQVVSHAETN AGRDSEVFELTDAGRDVLNAWWSTPVPREHPERDELVMKLAVAAADPTVDVEAMIQTQRR STLGSLRDVTRLKASADEGELAWKLILERHIFDLEAELNWLDHIESGAVSEAARRAAFAA AKGRSMNWAQAEAGISEHAGVR >gi|292820870|gb|ACYT02000032.1| GENE 15 11903 - 12046 64 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154507974|ref|ZP_02043616.1| ## NR: gi|154507974|ref|ZP_02043616.1| hypothetical protein ACTODO_00460 [Actinomyces odontolyticus ATCC 17982] # 3 47 89 133 133 82 97.0 7e-15 MLAGVEFTDLHPDEMPLLASADGEFWAVTAPSSPGVLWENIEDVLSE >gi|292820870|gb|ACYT02000032.1| GENE 16 12147 - 13025 995 292 aa, chain + ## HITS:1 COG:SA1606 KEGG:ns NR:ns ## COG: SA1606 COG0656 # Protein_GI_number: 15927362 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 24 290 9 276 277 208 40.0 1e-53 MNTPLPAENAPASSPIPTFMLPTGSPIPVLGFGTYKVAPEDTYGAVSRALEVGYRHIDTA QMYGNEAEVGAALEASGIAREDLFITTKVDNSNHEPDRAAASIRRSLEDLRTDYVDLLLV HWPLPTLYGGDVALPWPALEDAFNAGGARAIGLSNYEREHVEAVREVATVAPHVLQVESH PFFPNADLRAYAQGLGMVFEAWSPLARGRAVTDPTLVEIGAELGVGPTQVTLRWALDRGH VVFPKTLSRERMAANFDVFSFSLDPEQTARIDALDAGESGRMGSHPATMDRL >gi|292820870|gb|ACYT02000032.1| GENE 17 13045 - 14364 1271 439 aa, chain + ## HITS:1 COG:Cgl2030 KEGG:ns NR:ns ## COG: Cgl2030 COG1085 # Protein_GI_number: 19553280 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Corynebacterium glutamicum # 1 438 1 437 442 414 48.0 1e-115 MASKLTRADRAIVRLADGTVKQQNLLTGTEVWTVPGRSNRPLTAPHTDHNPIDHEADGHH CAFCSGRYLETPPEKSRLVRHEDGSWEQLDALGADQLGDTVAEFRRIPNLFEIVSYNYWH LNHGHVPSEDDRRRMAHYLASDAGYEHVMNVVRSRMLASGMSEGEFAATSETARLQSANG FFSGGHDLIIGRRHFVDGATEAHQLAGSGTLTPDEHEQYTAYTARSMRDLYDLDPAVRYV ATFQNWLRPAGASFDHLHKQLVAIDDMSVQTEAELERLRAQPDIYDQIFTVAATRKLLIA QNEHAVALAGFGHRFPGIAIWPLDEPKNPWEVSPEAMRGISDILHAAHAATGVEVPANEE WYHRPPTVSTPMRWRILLKWRISTLAGFEGGTRIYLNTIDPWKVVERTVPRLLKLREAGL IAPMRIGEECKVSPAMLRG >gi|292820870|gb|ACYT02000032.1| GENE 18 14391 - 15683 1259 430 aa, chain - ## HITS:1 COG:NMA0287 KEGG:ns NR:ns ## COG: NMA0287 COG4143 # Protein_GI_number: 15793304 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type thiamine transport system, periplasmic component # Organism: Neisseria meningitidis Z2491 # 113 339 74 288 333 65 29.0 1e-10 MARARSVFALSALLVAATTVAACTPSVSSSAPRDPFASPIVPGQSARASSSTAGHGTIDA PTPRSGSGTLTVALVGGAQLPMETAQEFTKATGFTVVAVPVDGVDALSKAGVDVVLGLDG ADALQATAAGTIAASAPQDTATLAGTVVDGAAAAIAYGRDDVCVIADKSWMSANGRPLPT SFGDLTSPRIRALLTVPDPASSSVGRAFVQEAAAQTGEGLGSFAQSLNPRVDSSLGGAIA AWTAGAHVSEGYLSEVAGASAGSSGAYPLIVAPRSLAAAAATNTGADSYGTAISSTCIAR IMYAAPTSSPASDGAESLIAWLQGETAQRSLATTGAVYPIDGVLAADTKAGWLMGITGDP IVADETVGSLDAMSAWLATWTSALASPAPAAPSTPDPVTDPGTQDVEPEPAPADNPAADT GYEDSSDDEE >gi|292820870|gb|ACYT02000032.1| GENE 19 15824 - 16102 478 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190478|ref|ZP_06608865.1| ## NR: gi|293190478|ref|ZP_06608865.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 92 1 92 92 122 100.0 6e-27 MDSATIEKLATTAVIAGAAFAASKVFEVGWKVATGRPIPAEDSDDVTIASLVLFAATSAA IAAVAQRYAYKGSQKWLAPKLEARFGVPQLEA >gi|292820870|gb|ACYT02000032.1| GENE 20 16133 - 16501 305 122 aa, chain - ## HITS:1 COG:no KEGG:Krad_4042 NR:ns ## KEGG: Krad_4042 # Name: not_defined # Def: hypothetical protein # Organism: K.radiotolerans # Pathway: not_defined # 3 122 4 123 130 112 58.0 3e-24 MAKRRIDPGEGMVALRSWRDAVERGEEPARAVVLTAVRFTLEELGISHPGRAVEVRVPPA GAVQILPGTTHRRGTPPAVVETDARTWLSLACGLLTWDEAVAASRVSASGERTDLGPLLP VV >gi|292820870|gb|ACYT02000032.1| GENE 21 16601 - 17509 998 302 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190480|ref|ZP_06608867.1| ## NR: gi|293190480|ref|ZP_06608867.1| cytochrome C oxidase subunit IV [Actinomyces odontolyticus F0309] # 1 302 1 302 302 582 100.0 1e-165 MTDIASLITLRSILDIEIARSYQWDAATIIKVSGVDRAGDLTTRIVEYPGALADIATEGF SPHSAAGHALSHELHDAIQRRVRLWIAEIPTEQLARLREALGDDVIHDAGQPRDGYTPIA LSPLELLEHWAAGTDEQREFMRVAMAGLDTLTTSSHATHASRAVGASIIERSAFLRLCRN PKFIAYVVVLVYSVARAVPVMYVPHFHGDWRILWAIDMITAIPYTWGLIEMVAGQKLWHR VVGAITAAITFIAPYVYFLMYGRHAPPGVWTAIALIFFGGIFLEVFRYQRDRAVKKGLAE QL >gi|292820870|gb|ACYT02000032.1| GENE 22 17750 - 18517 1000 255 aa, chain - ## HITS:1 COG:PA3857 KEGG:ns NR:ns ## COG: PA3857 COG1183 # Protein_GI_number: 15599052 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Pseudomonas aeruginosa # 31 250 15 233 238 156 44.0 3e-38 MPEQNVPTTTEQAQASSESASKPSLGRVIAAWAVHAFTISGLVWATLALFAILDNNIPMM WLWFVIALIVDGVDGTLARKVGVRQVIPWFDGGVVDNLVDYLTWTFLPALFMAVYLPFGP KPLPVIMMVVIIVSSVFCYANDGEKSNDNYFVGFPAAWNCVAIVMYVLQTPAWVNIAATI FLAIMTLVPLHYTHPARVKRFQIPNIIGAAAWIVACAYLVVVYPVQPLWTLILFWVGGGW FMIAGFIRTATGEDK >gi|292820870|gb|ACYT02000032.1| GENE 23 18878 - 19321 139 147 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGPAAIAACTIALTAAREALTKQLSHMHTREYARRPDDLHVGPMVFMWAAPPTCMSSGLR AYQGVRVRIKGLTRMFKGLGAKNTPRPASLCPNRRPPRRKRCNGPLWAGWSALRALHRLK QPTHRRETGAIASLELRHAGHTAPATF >gi|292820870|gb|ACYT02000032.1| GENE 24 20122 - 22479 3349 785 aa, chain - ## HITS:1 COG:Rv0803 KEGG:ns NR:ns ## COG: Rv0803 COG0046 # Protein_GI_number: 15607943 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Mycobacterium tuberculosis H37Rv # 11 755 3 733 754 830 60.0 0 MTSENTRELPDTVENAAATPGQDMPWKELGLKEDEYQRICDILGRRPTNAELAMYSVMWS EHCSYKSSKKHLAEQFGARTTDAMRKNLLVGMGQNAGVVDIGGGWAVTFKVESHNHPSFV EPYQGAATGVGGIVRDIISMGARPIAVMDQLRFGAVDHPDTARVVHGVVSGVGGYGNCLG LPNIGGETEFDPSYQGNPLVNALCIGKLRHDDIHLANATGEGNLVVLFGARTGGDGIGGA SILASETFEDGMPAKRPSVQVGDPFMEKVLIECCLDLFEAGVVQGIQDLGAAGISCATSE LASNGDSGMHVDLENVLLRDPTLTAGEILMSESQERMMAIVTPEDRERFFEIIDKWDVEA AVIGHLTGDGRLTIDHHGHRIVDVDPKTVAHEGPVYDRPYARPAWQDDLQAATSEDLSRP ATREELIADVRAVLSDINQASKAWVTDQYDRYVQGNTALAQPDDAGVIRIDEESGLGVAL STDANGWYTKLDPAAGARQALAESYRNVAVVGAEPVAITDCLNFGNPEDTDAMWQLVTAM TALADGCIELEIPVTGGNVSLYNSSGTEKGLPNSSINPTPVIGMLGILPDVTRANPSGFT EEGLAVILLGTTREEFDGSAWARIARSHLGGLPPEVDLKAEVALGNVVRALSAADGPDGR PLVRAAHDLSNGGLVQSLVDSALRFGIGGVFDVAGAARRDCVGDHEMLLSESQARAFVAV PEAAVKAVFVAAEAEGVDAVRIGTTGGDMLAISGVDLLAAEGEGCGWIASIDELRELSDT GRTYF >gi|292820870|gb|ACYT02000032.1| GENE 25 22549 - 23256 1012 235 aa, chain - ## HITS:1 COG:MT0813 KEGG:ns NR:ns ## COG: MT0813 COG0047 # Protein_GI_number: 15840204 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Mycobacterium tuberculosis CDC1551 # 3 234 4 222 224 258 61.0 6e-69 MTRVGVVTFPGTLDERDAARAVEIAGAQAVSLWHKDADLHGVDAVVIPGGFSYGDYLRCG AIAATAPVMSEIVREAGRGLPVLGICNGFQVLCESHLLPGALIRNDHQKFLCRDQVLRIE NADTAWTRAYGAGDTITVPLKNGEGNFQAAPAELERLEGEGRVVFRYVDFNPNGSANDIA GVTNAAGNVVGLMPHPEHATEAGFGPLSLGPDGASHHGGTDGLGIFRSVLASLVG >gi|292820870|gb|ACYT02000032.1| GENE 26 23253 - 23534 413 93 aa, chain - ## HITS:1 COG:Cgl2536 KEGG:ns NR:ns ## COG: Cgl2536 COG1828 # Protein_GI_number: 19553786 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Corynebacterium glutamicum # 1 74 1 71 81 67 54.0 6e-12 MGRIIVEVMPKPEILDPQGKAVGSALPRLGITSFEAVRQGKCFHLSVDGPVTDELLDQAR KAAEEVLSNPIIEDVVRVEAIDEADARYAGGVQ >gi|292820870|gb|ACYT02000032.1| GENE 27 23599 - 24600 1524 333 aa, chain - ## HITS:1 COG:Cgl2543 KEGG:ns NR:ns ## COG: Cgl2543 COG0152 # Protein_GI_number: 19553793 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Corynebacterium glutamicum # 11 328 11 286 297 304 50.0 2e-82 MTATPHGWTPLSAGKVRDIYAPDEAVVGPAPQTATQADRPRHAKAGPEALLMVTSDRISA YDYVLPTLIPGKGAVLNQLAIWWMGQLRPLVENHLLAVGTKAPAEASRALEGAQPTRFTV PAEVDGRAVVCRSLHMIPIECVVRGYLTGSGLAEYRESGSVCGIKLPEGLTEASRLEEPI FTPAAKAELGEHDENITFEQTVERIGEELAVAIRDLSISLYRAARDIAAERGIIIADTKF EFGIDVTTGALVLADEILTPDSSRFWPADQWVEGQVAPSFDKQYLRDWLVSEQSGWDRSS GANPPALPESVAAATAARYVEAYRRLTGSDPIL >gi|292820870|gb|ACYT02000032.1| GENE 28 24620 - 25954 1637 444 aa, chain - ## HITS:1 COG:Cgl2548 KEGG:ns NR:ns ## COG: Cgl2548 COG0151 # Protein_GI_number: 19553798 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Corynebacterium glutamicum # 1 433 1 411 421 351 51.0 2e-96 MKVLLVGNGGREHAIARALVRTSTPEHPVQLVVQAGNPALEQLGRSLTMDPLDPKDVVRR ATSENVDLVVVGPEAPLVAGVADAVLDYGIPVFGPTKDAARLEASKSFAKQVMADAGVAT ARAFTCTTMDEVEAAFDDLGAPYVVKDDALAAGKGVVVTTDRAQASEHARACLSRDGGAV VIEDYLDGPEVSLFCFADGATVVPLQPAQDFKRVGDGNEGPNTGGMGAYSPLPWLPEEAT QRIVDEVAQPVITEMARRGTPFRGLLYCGLAMTSKGIRVVEFNVRFGDPETQAVLERLDS PLAPILYAAATGTLAKVPAPVWSEDAAVTVVMASGGYPGPTDTGHEITGIEAAEELDGIH VIHAGTSEEITDDPTDVAAGCCGFEPTYALVNSGGRVLDVVARAATLDEARALAYRGVDL IHFDGEHHRSDIATWPADLVVTLD >gi|292820870|gb|ACYT02000032.1| GENE 29 26047 - 27084 1383 345 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190489|ref|ZP_06608876.1| ## NR: gi|293190489|ref|ZP_06608876.1| putative tetratricopeptide repeat-containing domain protein [Actinomyces odontolyticus F0309] # 1 345 1 345 345 440 100.0 1e-122 MPSENSQPEADLLPFGAPQVDPVDASVRAKLTKASSGKQKIQRNPRALRPLWYSIPILVI VLSVAAYLIGLSLWSRSSLSHWKAQEYNIAQTGYEGQMAWTKIGIERWVAHYNRGTTLVR QGQTDEGVTDLRTAFDLVPKATEVKPGRLEPFSYECRVRVNLAIGIEIQGDVQAAAGAYA NAATIYQEAEETVAPCQTASNSSQNQSDDQNQSDNKDQSSNQNQSGKQGQSGDQQQSGNQ SDNPADQNKERVEDKKQKAEEQSQEQGDQQQDQQDKGSKDQQDKGSKDQQTNPSPSPSPS PNPYEGETPEEKQRREELQHKNDQRNKDQRDKKDDRRSGNPNGAW >gi|292820870|gb|ACYT02000032.1| GENE 30 27074 - 28108 1288 344 aa, chain - ## HITS:1 COG:no KEGG:Bcav_3961 NR:ns ## KEGG: Bcav_3961 # Name: not_defined # Def: von Willebrand factor type A # Organism: B.cavernae # Pathway: not_defined # 14 332 12 328 399 220 40.0 5e-56 MIFRPVFHLAVLGIIAVLGALFVFLSAKRATRRHVMDVLRRFLIVVTVIIMGAGPSIPGE AQEVTSTLEVYFVIDRTGSMAAEDWDGSKPRIDGVRNDISIMMNILTGSRFSIMSWDSRA HTDLPLTSDASAVISYMDSFDRELSSSSQGSSVNRPAQDLAKLLKKNKERHPQNVRALFV FSDGETSNQNHWTSAPSGEASDWDAVKEYIDGGLVLGYGTEEGGPMKVLRLGDSGSQSGG EPEYIHDSSQPGNPIAISKIDEAALKDVASRVGVDYVHSPDKSAIESHARSVLDKATTLA ESRNLKDTYRYIIWPFALLLGALLAWEGATLALRAQQLRNSHAI >gi|292820870|gb|ACYT02000032.1| GENE 31 28110 - 29126 1185 338 aa, chain - ## HITS:1 COG:no KEGG:Bcav_3960 NR:ns ## KEGG: Bcav_3960 # Name: not_defined # Def: von Willebrand factor type A # Organism: B.cavernae # Pathway: not_defined # 24 317 25 322 343 202 38.0 1e-50 MRFTWLIFVVLGVVLAATCAGWLLARRAGVRSGKKGWVANTGYLRGLPKYQALVRRTRAS LAMAFVCFLIAVIATSVSAGAPVDRYVKHDKSASRDIVLCLDASGSMLPYDSKIGGAFRE IISHFEGERISLQLWDAYSMTMFPLTDDYEMATDVLQDMSDTIDTGLTRIGGRLSATQEL FDYLAPVMDENQEVSSIVGDGLASCVMGFDHNDKQRSRTILLATDNEVYGDGVYNLSEAI EFAKSQGVTVTALYPGSDITLSSEALQLRDEVRKTGGDFYDASSPSSVDRVVKQIEAEQK EELDSAGKMLETDRPGAALGWTLFGVVSLLGLLAFGRL >gi|292820870|gb|ACYT02000032.1| GENE 32 29123 - 29635 524 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190492|ref|ZP_06608879.1| ## NR: gi|293190492|ref|ZP_06608879.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 170 1 170 170 293 100.0 3e-78 MSGNLIEGLQEPVIYPHWMWILGVALLLAVLGWVAYSLWAWWHSREGSVTHLQTISQARR ARYHDYVNQIAQRRACGELDERGTHLAVAGLMRALGTERSGRDLEVATVAEIRALVPTWP QLALVLEACETPSFIGERADGAAGGPSLPGGAQGAGGTDILILASQAVDA >gi|292820870|gb|ACYT02000032.1| GENE 33 29890 - 30744 986 284 aa, chain - ## HITS:1 COG:SPy0135 KEGG:ns NR:ns ## COG: SPy0135 COG3764 # Protein_GI_number: 15674348 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pyogenes M1 GAS # 29 229 4 199 251 160 41.0 3e-39 MISLIPSLLALAGMLLFLYPSISAWIVQYNQSQIIAQYEDSVSKADPSAAEQLALAHRYN DALSSGAVLQANSNVPTGDGTSGDASLDYNAILAADSSGLMGRLKVPAADIDLPIYHGTD DETLLRGLGHLEGTSLPVGGQGQRTVVTGHRGLAEARMFTDLDKVQVGDTFTFEVFGEVL TYRVFDKKVVNPEETEALRSEPGRDLATLVTCTPLGINTHRILVTGERVYPTPQRDIDAA GAAPDIPGFPWWALGLLGGVSLIGLYIWRSGYPPRPKRRPTLNK >gi|292820870|gb|ACYT02000032.1| GENE 34 30885 - 33767 3772 960 aa, chain - ## HITS:1 COG:BH0361 KEGG:ns NR:ns ## COG: BH0361 COG4932 # Protein_GI_number: 15612924 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted outer membrane protein # Organism: Bacillus halodurans # 694 915 1277 1461 1661 62 30.0 3e-09 MTQHARTQRRATRFSRFAVAFAVCAAVTAAPILPNAAQPAQAAAEGVPSGSLPATFATGG MGRFKDSIQWLQWADYDKDFKGKEKPNVPVLGVGEGPKEFINHRDLGDAGSLVTTCTLSN LTHDTPAPGTPKQQTEGPLVATIPGAWAGDALDNLYNVGGPGSWSDGSEVWHSGLTYPKD YVNKNQMVIGLANGYAYNGGNAWDGKKWDQTTDHRPTGYNARVSVDYSCKAEIYGSDGTI TNVPIQGLVFADAEASSRRFGIKSWATSDRQDEWVQATVKKTDGNRPPRWRVLDTMRSRA CISKNTGKQVTTDGIVSDGGRTLRLMPSDEECVYQSGGTYSKPNGYGGPDAVMFMEGATS ATVTMQGAGYSAVALGLVVATDYGDAPDSYGIASSVFQPTWEGGEVRSTTDLFKVSPQAR MNMDRVSPRLGAYIDAEPNQPFSADALGDDIDDSTNDEDSVTLPADGIRTQPGATYNLSP TCAGAGKVAGWIDWNHNGTFDAGEKSNEAPCASGKAQLSWTVPADVVRSVDGEDGVGSAT YMRLRITADNNGNGQKPVGGTATGEVEDYRVAVRVPTLQLVKNVDNKYATAEVAGLGADQ WTLTGGAGTYTATGNGTTGGPTVVRTGNNDLSETTANPAGAGYEMGQWSCEQAPGTVGEN YSSSLSGTTTDGRAQLQVRGTDRVLCTITNTAKPGSLTWNKVDSDGITPLAGTTWTLTGP SVPRNATVEDCTAGPCPAQPYKDQDPAPGSFAIKDLKWGTYTVRETSAPVGYQVNLQAYT FPQIAPASLEATLNAAVVNERKTGSLTWKKVDASNTATALEGSEWTISGGALPGAVTIMD CKAASAAQCPKPAGATYYDSDPAAGFFAVTGLPWSDTAYALTEKKAPAGYRLDATPRPFT ITKDALDYAFAPITNDKQGVPAIPLTGGFGADAYVIGGIVAGLGATGAAAAIRRRKARTA >gi|292820870|gb|ACYT02000032.1| GENE 35 33925 - 35541 2449 538 aa, chain - ## HITS:1 COG:no KEGG:DIP2226 NR:ns ## KEGG: DIP2226 # Name: not_defined # Def: surface-anchored fimbrial subunit # Organism: C.diphtheriae # Pathway: not_defined # 6 533 1 552 555 280 36.0 1e-73 MRGRLVSRKYAPLGRRMIAAAGALSLGVAGVVATSVATFAEDPAYGTINQNATGSIVVHK HLKNATGTMGKVDGTADSGGDGVDGVTFKAYKVSGLDLSKPTDWDKLAALADNVPSNACA DPAHPTLGDNAPAVDTAASAEGTTAGGGTTTLAGLSVAAYLVCETEAPANIVEKAKPFVV TIPFPNTTNGGEGKWLYDVHAYPKNQKIEIDKTISDQTVNGVGLGSRVTFPVSTTIPSLD ADTNFTYFYIRDRLDDRLADGKVDKITLGADTLAENTDYVQSNTGGLVVVSFTRAGLAKL KENPNKKLEAIFSGTVSAIGDGTIKNKANLVQDTHYGAIPPNEPPSTPPTEPNNPPTSPE VSTDWGNAQLLKFDANSGAAKTGIKGAKFKVYNATEPYAADCSAATKAGDPITVNNKTEF VSDDAGLVAIDGLYVGDSVGSAGQGSQGATKRCYVVEEVEAPAGYVLPQKTTTGISVSKG TLAAATYSAEIANNKQPVPQLPLTGANGQLLMTIGGISLGLIAVGSTMVIRSRKRSEA >gi|292820870|gb|ACYT02000032.1| GENE 36 35741 - 36634 756 297 aa, chain - ## HITS:1 COG:ML1809 KEGG:ns NR:ns ## COG: ML1809 COG1721 # Protein_GI_number: 15827967 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Mycobacterium leprae # 15 223 35 238 320 84 32.0 3e-16 MPVRSREIHALSTRIQLPVLRKLLSVMEGQHSALRWGRGWEFMDLAPYQPGDDVREIDWA ATARTGSPVIKRHEATANLQVMLVVDTGREMGALAPSGESKEEVALTACEAIAWLSVARG DQIGLVAGDAERVRFMPARSGNAHAETIMRRIEEDITLSSPHSDVPKLLARARTVTRRRS LIVIVTDATQPEPTRLSDDIIKSLSVRHQVIQVSVADMNPADIDQDKTVIDVNEGPLPDF LRRDEQLAREASMVVEQRRAAVAHMLDMRGVIQVSVGSSEEVPRALLRALQRSGARR >gi|292820870|gb|ACYT02000032.1| GENE 37 36675 - 37664 1025 329 aa, chain - ## HITS:1 COG:ML1810 KEGG:ns NR:ns ## COG: ML1810 COG0714 # Protein_GI_number: 15827968 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Mycobacterium leprae # 23 329 47 352 377 264 45.0 2e-70 MAEYLTDAELAQAKDMLNRITMIYQAKVVGQEDLRTALTACLLAGGHVLVESVPGLAKTT AAQTLASAVSGTFHRIQCTPDLMPNDIVGSQIWNQASGEMVTQLGPVHANLVLMDEINRS SAKTQSAMLEAMQEGQTTIGGVNHRLPRPFMVMATQNPIEEEGTYVLPEAQMDRFLLKEI ITYPAPVEELEVLERIDSGVMSLPTSSEPVSITDVLLLQDLTRRIYVHSTLKAYIVDIIN TTRGAGPNPLPGWTKHVRVGASPRGAIALMQISQALALMDGRNYVVPDDIKKLRYGILRH RIIRTFDALADNVSVEGLIDAVFNAVPVP >gi|292820870|gb|ACYT02000032.1| GENE 38 37870 - 39705 2736 611 aa, chain - ## HITS:1 COG:Cgl2803 KEGG:ns NR:ns ## COG: Cgl2803 COG1274 # Protein_GI_number: 19554053 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (GTP) # Organism: Corynebacterium glutamicum # 8 611 9 610 610 726 58.0 0 MSVTEQDVRAAAPANAPEDVIKWVAEIAELTTPDAIEFSDGSQEEWDRLTSQMVESGMFT KLNEEKRPNSFLARSKPSDVARVESRTFICCEKEEDAGPTNHWADPKEMKAILREKFTGS MKGRTMYVVPFSMGPLGGPISQLGIEITDSPYVVVNMRIMTRMGAAAMDLINEGRVWVPA VHSVGAPLEPGQEDSTWPCNDEKYITHFPETNEIWSFGSGYGGNALLGKKCFALRIASTM AKRDGWMAEHMLVLRLTRESTGQQFHVTAAFPSACGKTNLAMLQPTIPGYKVETVGDDIA WMRPGQDGRLRAINPEAGFFGVAPGTSYKTNPMAMETGKANSIFTNVALTDDGDVWWEGI DGEVPAHLIDWHGNDWTPESGEKAAHPNSRFTVPASQCPIICPDWEAPEGVAVDAILFGG RRATNVPLVAEQYEPAHGVFIGASVASEVTAAATDVKAGSLRHDPFAMLPFCGYNMADYW GHWLEMQDKLGDKFPKVYQVNWFRKDEDGNFMWPGYGDNARVLDWIVRRAAGEVEAIDGV TGRYPKFEDFNLDGLDIDEAVWAKLFAIDPDAWAAEMDDTEEYFSQFGDKLPAAITEQLA KFRERIAAAKA >gi|292820870|gb|ACYT02000032.1| GENE 39 40077 - 40709 1092 210 aa, chain + ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 11 210 9 210 210 102 31.0 4e-22 MGLRSKTQGPDFFEDLTSQARQLVQAVEFLSHIYAASPEERIALRDQLHEVEHRGDELNH AIVQRINSSFITPFDREDLQSLASHLDDCLDFIDEAGDLLVVYGIADIPSSLVSLLNEQI AVIQHCADLTAENMPKLKSPVDMRDYWIEVNRLENEGDLAYRRTLTALFDSGLDPVTIIK LKDIVQGLESCADAFEELANVIESLALKES >gi|292820870|gb|ACYT02000032.1| GENE 40 40713 - 41777 1628 354 aa, chain + ## HITS:1 COG:CAC3093 KEGG:ns NR:ns ## COG: CAC3093 COG0306 # Protein_GI_number: 15896344 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Clostridium acetobutylicum # 18 347 19 329 330 236 45.0 7e-62 MDLNLILVCVVIAVALFFSYTNGFHDAANAIATSVSTRAWTPRAALLMAAAMNVIGAMMG TAVAKTVGKGIISISDYAESPMVEMQQKGLVIILAALLGACIWNLITWWFGLPSSSSHAL IGGMVGAGLMSGTVVHWWGIMSHVVIPMFASPIIGFVIGYIAMKIVLWALRKAQYHRTMR RFRAAQRFSSAAMALGHGIQDAQKTMGIIVMALLAGGYGEHHNILDPITGEMNVPLWVKV SGALAISLGTMAGGGRIMRTIGRKIIDLDPARGFTAEAVSSSILYLCSYVIHAPISTTQV VSTAIMGVGCTKRFSAVRWGVAGNIVIAWFLTLPAAALVSGIVYLVVALPLGVH >gi|292820870|gb|ACYT02000032.1| GENE 41 41777 - 42214 401 145 aa, chain + ## HITS:1 COG:no KEGG:Bcav_3422 NR:ns ## KEGG: Bcav_3422 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 3 127 7 133 150 75 37.0 8e-13 MRGRFVVTAAVVALAAAPLAACSDSSVMHMRVGQCILLPEDKSATTATTIDKTSCTGEHD AEVFALASAPDGDFPGAEALNRQAETECISAFDAYVGSDYLTSSLDATWMIPTKDSWAQN DRSIVCLARPLDHSKLTSSVKESGL >gi|292820870|gb|ACYT02000032.1| GENE 42 42397 - 43656 1255 419 aa, chain - ## HITS:1 COG:ML1682_1 KEGG:ns NR:ns ## COG: ML1682_1 COG0494 # Protein_GI_number: 15827893 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium leprae # 7 128 11 124 143 80 44.0 4e-15 MRPMPAPRPQRLVRSAGALVWRFTDPERVAVPGESIDPADIEVLMVHRPRYHDWSWPKGK TEHGESLVAAAVREVEEETGQIITLGAPLTTQRYRLGGGQTKEVHYWVGTPVPAGHASER LRAPVARAPRTEIDQTAWTSPERAADMLTRRGDRRLLADIVARAREGRLVTTTLLVLRPG QGLTPRLDEAGGARATASPSASSGGSAAPAEAAAPSKPRPAPTPAMVASAAARRAAQVEQ GSAKKVETAPEPVDPPLSRFGVRQAFDLIDLLSSFGVARAFASPAARSRQSLTPWASMGG GSVTLVESLDLAVSGPDAQIDGEARLGRVRAFAAERLREHASPTVLSVAGTARDAIIEEI RAYASAPVAGGEAPCLRHGQVLVAHVEHAGDSLTVAALETHGVTTKDPAARARKASKKH >gi|292820870|gb|ACYT02000032.1| GENE 43 43782 - 44411 738 209 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10438 NR:ns ## KEGG: HMPREF0573_10438 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 3 209 2 211 211 109 36.0 6e-23 MAQSKMPRRPAMLDAARADAIIGDEDPAASAAVAHTAAWALMGVGDETFTDADVARLRET VRTSGVDTIAHVWSRSPEFTLPGALWRVYLLHEWYHRDPLLVAERYAEGSRAPIIQGLEA PVELRPLSLIMEEVDSLLRGDLTDDDLEYVLGEASRAMRVLAAGEAGALWIEDPADPLAH RVTMRHSALLVTADELDVAAREAAVGTLD >gi|292820870|gb|ACYT02000032.1| GENE 44 44584 - 46689 1034 701 aa, chain + ## HITS:1 COG:mll1744 KEGG:ns NR:ns ## COG: mll1744 COG1397 # Protein_GI_number: 13471694 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Mesorhizobium loti # 5 350 7 343 344 160 40.0 8e-39 MDPRLSHAHGALAGLALGDALGMPTQEMSPAQIRAVYGRITGLVDGDASQPYAPGMPAGS VTDDTEQALLVASLLIRSRGSSSGRVALNAVEFAHALLAWEDSMIERGSLDLLGPSTKAA LERVRAGEDPLTVGGEGTTNGAAMRVTPIGIAVSTEDPEAFAEAVWSSCRVTHATRQGFQ SAALVAAAVSMGIDATRSPSLDLRGLLWKALTYVDSLPDRGAWTPDPDVIAATRRAMQLA VNPASSSLECLVEQVGTSVASAHAIPMAFALLARDPSPQALLDAANIGGDTDTIGAIAGA ILGAALGVEVLPTDNLSMIEEISHLGLSSVAGDLLALRDQALVGRPEDAATDASSDARPE VSRGVTSPEEPAPTSSPASPAGRVVLMGQILVDRVLQGTGPIYGGGSGRGTDEGIHVGAG FSALVAARRMGAEAISLSPIGDGPNASLIEEALKREGIVDAGPRVPDCDNAMRTVLIARN GSCTIIATKGAEAMAPENVWANYVCSLHPVDVLYIDGSLMDHPANRIAAENALRALPEGV RVVLDVSPTIGIPNGLPSSAIISMNYEESQVLWTRIPEKERQFLSWTPADNAATTLASRL HRDVLVHKDANGAYFAPYAPSDALPTFHIPTPRIRAVDSNGAGDAHSGVLSACLTQGVSL KRALLLANCAGALASTAAGPATCPPRAQIETAADALAEQED >gi|292820870|gb|ACYT02000032.1| GENE 45 46693 - 48660 773 655 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_02780 NR:ns ## KEGG: PFREUD_02780 # Name: pfkB # Def: carbohydrate kinase, PfkB # Organism: P.freudenreichii # Pathway: not_defined # 318 649 6 321 334 73 27.0 3e-11 MDPRLDRAQGPTIGFAFDHVLTMDTLVENGNEAASLSERILALLRLQNSAEKPSFPSMKL SSHRLAQLLVHAAQAGSYTSTCGRQAFADAVWNYCEDEEPHCREFQAATLVAAAVSLGLD SPNLSVEDTLVRAIDVAASLEPRGEWSPEPDVVAATRRAMNIVSDMNASAESPLERLVEE IGAGDSLSQIVPMTFALASRYQDRRILTSPLRLGVHSSTILSTACALVGAVRGADFLRSY GARMVEESLRFDPNENAKRILSCRVPYPGDPLVPDGPSCPIAPSGPSSFEDTDSGENTRQ RYFPSVAPHVSLKALRADAQLGRVVFLGELFADHIMHGHKYPEFGEHVWASDRGWTAGGC YRAMEAARHMGAQVVSLCPIGQGPNARIIAQALRRMNIIDAGPHLSGVDNGYRLQFSADE GYRMILRGTNSDWHMTLSTTTPLPSLASREWAESLQALGPSDILWIDGALMGHEPTAQAL NEALRGLPEHVRVVFDGASDEGVPGNLPLDNVLVSLRVGNHTTFREHFGVDSSLARYNDR PEHQATALCLLSERHIVLRNADNEALFVRPTLDDARILSPSLTRVPGPPFSPTVRAERMA DVHSGTLAACLALGMSAERGVLLANCAAALGTLTSLSARDAIETAATGLKSRDQA >gi|292820870|gb|ACYT02000032.1| GENE 46 48676 - 51534 1032 952 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0424_0289 NR:ns ## KEGG: HMPREF0424_0289 # Name: not_defined # Def: ADP-ribosylglycohydrolase # Organism: G.vaginalis # Pathway: not_defined # 649 915 12 314 347 90 27.0 3e-16 MDLRLPYALGALAGLARADAAHSATLEVPNRPVGAVVTSAIAVATRLMKAPDGLRSIRSG RWSTPAASADARLLCAIPVGIALSTVDLEAFAETVWFACGCTNRNEFQSAALLAAAVSIG INTQRRSHIDTLWDAVDVVSAVSPRGEEDGGADVLEVAQRTLKAVANTQSDLRSSPTPVL QETLSDCTPSSRIVPLAFFLAASPQGADEASKCFALSGSPALCEAVAETLSGVFAPSGVL SDLDLAQCSEDVHVDWLGIAGQLLELYPPAPIDWIRRALGDAIPRVPRRDPSPFEASESG ASTRADADDQSADEPRDSNAAGASSGRVIIMSELMLRFDRRTKDERIPTGAEWSTREGVH LARPFPAMRAARAMGVEVVSLSPIGEGPRASIIADALAREGIIDAGPRVTRCDNGFASPV TTQAGGYKNARISGMPEDAWDEVIRTLGRSDVLYIDASIEDNPPVLAAAEHALAHLPRHV RVVLDVSGAFIGPRSLPNDNVLMVLDQGSVEPLGMRFMSDRTAFDASRVPAHAASFILSL FHRSALISTMTYESFLARPRHATDEASEPRTRFHAPTVVSTDHDGAYSVWTGALASALAE GNAIERSIILANCAGALASTMPGPASCPTREQIEASARALPERDDVELERRARALGALAG VVFGDAIGIPAMGMPTEQVQELYHRSSSLKDAPTSHPAMPGAPAGTLTAVTSEVLASSSA LLSEGTSPLRGEAKDRAGDELAGSRYVLRAIPVGIATVTTDPEAFAEAVWQACGNENLTR QEFQAAALVAAAISLGIDKKNYRASGIVSFLQEVINYVADLPPHGSASSGPDVLQATCKA IGIVLHFGDDIYERLRESIGTSADPTQSVPAAFALVDKSESRFAATNAAILGGETSLIAA ISSAVQGAICGITMFSPDDLATIERVSHPGIAPLAERLVERRVHVSDDATSN >gi|292820870|gb|ACYT02000032.1| GENE 47 51546 - 52619 853 357 aa, chain + ## HITS:1 COG:mll1743 KEGG:ns NR:ns ## COG: mll1743 COG0524 # Protein_GI_number: 13471693 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Mesorhizobium loti # 32 344 3 303 325 124 33.0 2e-28 MIPLSDTTHPIPDAQPTPPCGRGSTNGNGPVGRVVLMGQILVDLAVRGEALPSPGGDVWA IDEGMHVGGGFNALVAARRMGAEAVSLSPIGDGPYSSLIQAALTHEGITDLGPRVTGIDN GFCIAFTDRTGERTFISTKGAETMAPASAWADFVRTMNPGDVLYVDGYLMDHPANREAAE AALRALPEGVHVVLDVSPVIGIPEGLPSDDVIVSMNHREAQEIVHQRGHASVRNRCDQPR EVAQGVLAVLDRPVLVRAGAEGAYFVLPAGTAPNARNEDVIHVPTPRVKAIDTNGAGDAH SGVLAASLAQGIPTEQALLLANCAGALSTTVVGPASCPTREEIEAAADALEASNDEE >gi|292820870|gb|ACYT02000032.1| GENE 48 52759 - 54003 1473 414 aa, chain + ## HITS:1 COG:ECs1866 KEGG:ns NR:ns ## COG: ECs1866 COG0477 # Protein_GI_number: 15831120 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 17 388 4 370 387 166 33.0 8e-41 MTSHDTQDRGGIVGGALTVALLITLAVQNAVPPMATDMYSAAFPQITADLATNSTMLGFT LTTFFVGYASGQVLGGAISDQIGRRRPIIAGGIIALVGSMICVFTPNIWVLLVGRVFQGL GGGVASSVARAILVDVAHGKTLARAMSLLQAIVGFAPMLAPVLGAFIITHATWRVVFWAL AAFTLLMAALAWFVVHESLPEERRHPGGIPRFFHGLVQVVRIRPFVGFMLTNAFSSFCMF GYISNATYVLQGPLGLSPMAFAWVFAFNALLSTGFALVNVRLISHFTPRTLIITGLTIAA TGVVTLAISIFLLDLPLILTCMGFALVMTANAFIFGNSAAQAMSEAREHAGTASSVMGVF QSIANGIAAPLATSGGDSAVPMVLVMIVGSAGAWFAFWVIARGGKHTPRQLNLD >gi|292820870|gb|ACYT02000032.1| GENE 49 54374 - 55234 978 286 aa, chain - ## HITS:1 COG:mlr1493 KEGG:ns NR:ns ## COG: mlr1493 COG5006 # Protein_GI_number: 13471502 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Mesorhizobium loti # 3 280 7 289 298 123 33.0 3e-28 MNAPAQRPVTDRIPPQLYIVGSGLIQYVGAALAVIAFASVEPASVAWWRVLTGTIVLLAW KRPWRGGLTRSDLAISALFGVIILTMNSSFYESIARIPLGTAVSIGFIGPVAVAVIRGRG WRPRIAAVLAFAGVACIGGLALDLSVPSVRVGVAWILLAALAWSAYIVVGQKASTTRDGV TNLALGCAWGTLFFAPILGPGAMAPLASWKLIAIVVGVGLLSTAIPYTFEALAMRRLAAS TFALFAAILPATSALVGAVMLRQIPGVFELIGLVLVSVAVWLASRD >gi|292820870|gb|ACYT02000032.1| GENE 50 55248 - 55652 537 134 aa, chain - ## HITS:1 COG:AGc1655 KEGG:ns NR:ns ## COG: AGc1655 COG0229 # Protein_GI_number: 15888246 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 132 11 134 135 155 56.0 2e-38 MNATDPAARTDAEWKKLLSPMRYHVLREAGTERPFTGELLDEARVGTYSCAACGSKLFDS DAKFDSSCGWPSFFQAHDGATVESVDTSHGMIRTEVRCATCGSHLGHVFPDAPDQPTGMR YCMNSAALTFAPAQ >gi|292820870|gb|ACYT02000032.1| GENE 51 55734 - 56750 799 338 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190512|ref|ZP_06608899.1| ## NR: gi|293190512|ref|ZP_06608899.1| putative integral membrane protein [Actinomyces odontolyticus F0309] # 12 338 1 327 327 504 100.0 1e-141 MTAPDPASRNEMPDLNPAPDQQAVLDPQDAPDQNDPPGGHVTGADHAALAARLVLPIIGI ALAGTILGVATPITIAWMILVPAAIVLLVWKRPWRQRLDLRGLGIAVLVGLLEVGYASLV FSAMNHLLVGTVAVFLMTIIIPVGVVHGRGKLRFLSLALALAGLVAFVSQAPPSTVNGNV QQASMMASIFAGLSLLLLTAVQAAVPRLGYDRGTIRGVGLTIAAAGFGVWDAVSGVIPAL TGSFIAVIVAVSLLMFIIPAVLLRVGDQGAYTRTAARYNAFYPAVAMVVGGIVLGQVPSV LDLLGLALVTGALWIMSGVTIVPRRLFGKRGSGAVTAD >gi|292820870|gb|ACYT02000032.1| GENE 52 56865 - 58595 171 576 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225091923|ref|YP_002661910.1| ribosomal protein S2 [gamma proteobacterium HTCC5015] # 464 566 188 300 307 70 40 2e-11 AKRARRRATADRQRELAEGGPSTSRDETQVISKSALRKIIEAAGNANPQLTQTLTTTSIG RGERFFSGSAEAEERAAALTGPGEEVYAEREAEARRAQERREAHKRREADALDPAATLAL AAVGVEPVVAGNEAPDNEEPDAAQDVAANYAAAESAAAGSEIADDQTEGVKPEADAQSAD GSSAEEQATDVQAAPAQGEAPADAATDAGASADSGDSRAVDSQEGSAPVEDAEPEGAPAP DAPEETGDEEEAQASSDVELSADEQETTPIPARETSVKHPVQVPPPVRTGRPVMTDTVQA IAPALVPPPAPTPAEMAASRAPEDEADEPAVHPGWYAVAEEARLDAETRPTPTVKHARVS IMDFFPAVAPTGAEANVLRAVTGQIPAIEPPEPKPENAESAVAEKAATDEAAAPESAPAE DVAPEVEAREAKAAENDAADGPTADETAVMDPVEAAEAGALDSDATQVLPSVDEPVDETL VMLAADIAEPASEAAKAAEAAATDVSAAEEEAPRNKEPAKKTASTKTGAKKAPTKKAATK KATAKKPAAKKGAAKKAAPKKAAAKKTSNAGPSTNE Prediction of potential genes in microbial genomes Time: Tue May 17 06:33:50 2011 Seq name: gi|292820864|gb|ACYT02000033.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.10, whole genome shotgun sequence Length of sequence - 4940 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 42 - 950 314 ## gi|293190560|ref|ZP_06608901.1| conserved hypothetical protein 2 2 Tu 1 . + CDS 1199 - 1969 970 ## COG0560 Phosphoserine phosphatase 3 3 Tu 1 . - CDS 1979 - 2815 669 ## gi|293190562|ref|ZP_06608903.1| conserved hypothetical protein 4 4 Op 1 . + CDS 2833 - 3762 831 ## gi|293190563|ref|ZP_06608904.1| putative potassium-transporting ATPase A chain 5 4 Op 2 . + CDS 3817 - 4939 1457 ## gi|293190564|ref|ZP_06608905.1| conserved hypothetical protein Predicted protein(s) >gi|292820864|gb|ACYT02000033.1| GENE 1 42 - 950 314 302 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190560|ref|ZP_06608901.1| ## NR: gi|293190560|ref|ZP_06608901.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 302 36 337 337 415 99.0 1e-114 MCSNPGQASLILASASAPVPEGTPCVRVGQGGQVSLPGDTALLVSLIAEASSRTRRSGAV WVVAGIAGGVGVTGIVRLLARERGRRRSVRGGVWRRERGARRTRSGDAVVVDASGSVPGV ALAADHDVPGVRWADLDASEDSYLPSLREHLPVVGGVRALVGDSRGGAAADDPRVVAACR SLDAPLIVDAGRWDERAARCVSAIHADALIVVTHGDLEGAAALSATCTAVPPPCPAITLV SAGERWGAGLRACAPGSILRAPTRSGRDLRGLIRALESASAAHAGGAVSSPGELLAIEAR HA >gi|292820864|gb|ACYT02000033.1| GENE 2 1199 - 1969 970 256 aa, chain + ## HITS:1 COG:MT3761 KEGG:ns NR:ns ## COG: MT3761 COG0560 # Protein_GI_number: 15843274 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 4 256 27 282 287 192 43.0 5e-49 MVRAAFFDLDKTILDTSSNVALSGPFIEAGLMNRRTALASVLVQLPYLLAGADESRMEQM AQALGRMGRGWNAAFLEATVEDALERTIQPVCYAQALARIEQHKRAGDIIVIASASVEQV VRPIAQMLGADEVLASRAAVDEDGCFTGEITHFNQAQGKADACEALARARGWDLSDCSAY SDSVSDAPLLRLVGHPYAVNPDRGLREMAQREGWPTLTFTSTVRVLPREVPTPAKVAVPF IAGIAVGAAACALLRR >gi|292820864|gb|ACYT02000033.1| GENE 3 1979 - 2815 669 278 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190562|ref|ZP_06608903.1| ## NR: gi|293190562|ref|ZP_06608903.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 278 1 278 278 412 100.0 1e-113 MSIEALVDPAPAVLCAAAACPDVASAMNEAHTALADLRFSEGLRRGWEEARAEAAVREAA ALSIIEGARTSVDDVRALSMADEGGAASDPGAALALGIWRSQWNLASRFPALNTRSQGVA RVAPTPLPALIAGLHRDACSGLVAAGLVESRSVAVPADPSLLAPALAYTCCDAPGLAVAA ALTAHFRFRRVFDPASSVVGGGLARWILVTRGVDPTGVCVPSAYDALDPARAGRELAGWV SADEAGLARWIIHYCAGVVYGAQVGRDVARHVQAGRLS >gi|292820864|gb|ACYT02000033.1| GENE 4 2833 - 3762 831 309 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190563|ref|ZP_06608904.1| ## NR: gi|293190563|ref|ZP_06608904.1| putative potassium-transporting ATPase A chain [Actinomyces odontolyticus F0309] # 1 309 1 309 309 494 100.0 1e-138 MTLLQHRNLSARLRSGLFAFVFAPIALVFLGSSMVDVQALASVGQPLASVEGLIGMALAS LLLALIALNCEESSAGMVVTFVWSIVVGVAQFFGVARLPFLMKSSVGAEDVIAGVSWCLY PVCMSLMLGACALTIKSVRVRAGKSTRVPLARVHRHGFGTTVALPAAVAAGTLMVAAAPS DTTNVAAMGLEGVTEGFEPMHWLALGAGIAFAVLVVSARWSITGTQIASWFILVLPTYVV LPVWASLTGNVIVPGPSLLTKMALASPPLAALGMATGCASMGVLWARVRALKKLEADDDS TAKEGPAEG >gi|292820864|gb|ACYT02000033.1| GENE 5 3817 - 4939 1457 374 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190564|ref|ZP_06608905.1| ## NR: gi|293190564|ref|ZP_06608905.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 374 1 374 375 337 100.0 6e-91 MSDIEFDAQRDRAEEAPDNLVLTGEEIELPGEDSDASAIIGEPSEPIHTGEIEAVAIGGL TGRVPAAAPLKPTIEDKISTGELPVVSTPEGDLPVVSSSDEAGSAPEQEQAEQDSPADAP AADQGADESAAADAPSAEATDEPETTDEAPAEDVTEEQAPAEDTASEELAPAEDTASDEH AHTSSNEEGEQPEASADQSEEGENSFASLLSSADEDAADEATEDVTEDPEPALAPVMTPA QAAAALSEASDAATDEAEAPSSDEQPSEDEVAESEVAVVGGAAAETYAHSPSSRRSMIFG DDETLSSSIPAVAAKEENAPAETSAEEEPEAEEEAPFTEPTTQLPTQDTEASYSFEDQDA AEAARPRRRSLLGQ Prediction of potential genes in microbial genomes Time: Tue May 17 06:34:58 2011 Seq name: gi|292820831|gb|ACYT02000034.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.11, whole genome shotgun sequence Length of sequence - 28092 bp Number of predicted genes - 34, with homology - 32 Number of transcription units - 19, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 688 1061 ## Arch_1718 hypothetical protein 2 1 Op 2 . + CDS 685 - 1590 883 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 3 2 Tu 1 . - CDS 1639 - 1863 154 ## + Prom 1609 - 1668 2.6 4 3 Tu 1 . + CDS 1771 - 2454 175 ## PROTEIN SUPPORTED gi|163788659|ref|ZP_02183104.1| 50S ribosomal protein L20 + Term 2465 - 2522 22.6 - Term 2513 - 2574 7.5 5 4 Op 1 . - CDS 2598 - 2777 343 ## SCAB_41361 hypothetical protein 6 4 Op 2 . - CDS 2787 - 3137 467 ## Arch_1726 transcription factor WhiB - Prom 3171 - 3230 1.9 7 5 Op 1 2/0.000 + CDS 3307 - 5427 2830 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 8 5 Op 2 . + CDS 5417 - 6397 742 ## COG1408 Predicted phosphohydrolases + Term 6616 - 6655 12.1 + TRNA 6536 - 6612 76.2 # Pro CGG 0 0 9 6 Tu 1 . - CDS 6613 - 6783 138 ## + Prom 6538 - 6597 80.4 10 7 Tu 1 . + CDS 6749 - 7282 671 ## gi|154508118|ref|ZP_02043760.1| hypothetical protein ACTODO_00612 + Term 7317 - 7369 18.8 11 8 Tu 1 . - CDS 7377 - 7799 414 ## gi|293190623|ref|ZP_06608914.1| putative U4/U6.U5 tri-snRNP-associated protein Snu66 - Term 7849 - 7897 10.2 12 9 Tu 1 . - CDS 7959 - 8942 1412 ## COG0385 Predicted Na+-dependent transporter 13 10 Tu 1 . + CDS 9044 - 9934 1027 ## jk0566 hypothetical protein 14 11 Tu 1 . - CDS 10004 - 11068 1486 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 15 12 Tu 1 . + CDS 11086 - 11520 471 ## COG1950 Predicted membrane protein + Term 11542 - 11585 11.5 16 13 Op 1 . - CDS 11551 - 13242 1412 ## HMPREF0573_10723 hypothetical protein 17 13 Op 2 . - CDS 13239 - 13544 206 ## gi|293190629|ref|ZP_06608920.1| conserved hypothetical protein 18 14 Tu 1 . + CDS 13788 - 15245 2101 ## COG0015 Adenylosuccinate lyase + Term 15260 - 15307 14.9 19 15 Tu 1 . - CDS 15336 - 15743 388 ## gi|293190631|ref|ZP_06608922.1| conserved hypothetical protein - Prom 15928 - 15987 1.7 - Term 15917 - 15966 -0.9 20 16 Op 1 . - CDS 16023 - 16691 646 ## gi|293190632|ref|ZP_06608923.1| hypothetical protein HMPREF0970_01256 21 16 Op 2 . - CDS 16697 - 17365 331 ## gi|293190633|ref|ZP_06608924.1| conserved hypothetical protein 22 16 Op 3 . - CDS 17370 - 18044 338 ## gi|293190634|ref|ZP_06608925.1| putative oxidoreductase alpha subunit 23 16 Op 4 . - CDS 18047 - 18733 579 ## gi|293190635|ref|ZP_06608926.1| hypothetical protein HMPREF0970_01259 24 16 Op 5 . - CDS 18730 - 20415 757 ## SACE_1016 hypothetical protein 25 16 Op 6 . - CDS 20415 - 20765 301 ## gi|293190637|ref|ZP_06608928.1| putative integral membrane protein - Term 20821 - 20856 -0.1 26 17 Op 1 . - CDS 20892 - 21560 586 ## gi|293190638|ref|ZP_06608929.1| hypothetical protein HMPREF0970_01262 27 17 Op 2 . - CDS 21566 - 22033 441 ## gi|293190639|ref|ZP_06608930.1| conserved hypothetical protein 28 18 Op 1 . - CDS 22230 - 22913 322 ## gi|293190640|ref|ZP_06608931.1| conserved hypothetical protein 29 18 Op 2 . - CDS 22918 - 23592 394 ## gi|293190641|ref|ZP_06608932.1| conserved hypothetical protein 30 18 Op 3 . - CDS 23595 - 24266 471 ## gi|293190642|ref|ZP_06608933.1| putative citrate lyase acyl carrier protein 31 18 Op 4 . - CDS 24266 - 25960 881 ## SACE_1016 hypothetical protein 32 18 Op 5 . - CDS 25960 - 26310 316 ## gi|293190644|ref|ZP_06608935.1| putative chlorosome protein - Term 26366 - 26401 -0.1 33 19 Op 1 . - CDS 26443 - 27084 624 ## gi|293190645|ref|ZP_06608936.1| putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase 34 19 Op 2 . - CDS 27081 - 28091 920 ## Krad_4292 hypothetical protein Predicted protein(s) >gi|292820831|gb|ACYT02000034.1| GENE 1 2 - 688 1061 228 aa, chain + ## HITS:1 COG:no KEGG:Arch_1718 NR:ns ## KEGG: Arch_1718 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 31 211 154 338 345 77 32.0 4e-13 GDEDSEAATLAAIAATAARGDKSDAPSSLDDELFSAAPEITEMPSRTGAHWLSFLLFLLL VPAGWYLAADAGARMTLADAAPMYTGVASIVALGEVLGAIIISAILFVTARRSSLGAWLM GIVTLIVGLPWLMAPGITAASVLSALTALTNTGSLGANLSHHLQASGYSGRFALLGIALM GLAYVSHSARRTGRAEEALRVSLEATNPAGAFYSKRARKKAAKEAARK >gi|292820831|gb|ACYT02000034.1| GENE 2 685 - 1590 883 301 aa, chain + ## HITS:1 COG:ML2297 KEGG:ns NR:ns ## COG: ML2297 COG0596 # Protein_GI_number: 15828229 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mycobacterium leprae # 8 293 7 312 324 106 31.0 6e-23 MKTLIPASAIELEGPWTHRHVSAGGAAFHVADMGEGMDHALVLLHGFPEHWWAWRDVLPA LAESTSRVFALDLRGFGTSDLTRGDCDLQQMANDVIGVVRALGVASFSVAGMGIGGTVAW MIGALAPLELRSVAVLSAPHPLGVQPVIVRAPWAGGRVLQGRLALPTGRERALRSGSFVT TVFRAWASPGDVDGLVSQSGTYRAALRRPFAAHTALRGLSAARKISRLERRILSEPLRVP VLSLVGRDDGAWSALDHAADAQFVDAPLTQIVIREAGHFLPEEAPQAVAEALSEHVITHA K >gi|292820831|gb|ACYT02000034.1| GENE 3 1639 - 1863 154 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTHLLLEGHLLCIIKATEQRHLADEVSVTDHGAELLPLVPDCSGVSIWIAQWIPYVIPLT RRYRASHHYALSIR >gi|292820831|gb|ACYT02000034.1| GENE 4 1771 - 2454 175 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788659|ref|ZP_02183104.1| 50S ribosomal protein L20 [Flavobacteriales bacterium ALC-1] # 35 195 34 197 223 72 26 4e-12 MIGDGNFISQVPLFSGLDDAQQVSLQQKMGHTTLRRGETLFDEGDLGDRLYIVTEGKVKL GHTSSDGRESLLAVLGPGEIIGELTLFDPGPRSTTATAVSPASLLYLEHEDLMHVLDTNP TLAKHMLRALAQRLRRTNESLSDLVFSDVPGRVAKALLDLADRFGTATDKGVHVPHDLTQ EELAQLVGASRETVNKSLADFVSRGWIRLEGRAVTLLDVDRLARRAR >gi|292820831|gb|ACYT02000034.1| GENE 5 2598 - 2777 343 59 aa, chain - ## HITS:1 COG:no KEGG:SCAB_41361 NR:ns ## KEGG: SCAB_41361 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 1 50 14 63 65 80 80.0 1e-14 MTKWEYSTIPLLTHATKAILDQWGADGWELVQVIPGPTGSENLVAYLKRPIEEAPTVQN >gi|292820831|gb|ACYT02000034.1| GENE 6 2787 - 3137 467 116 aa, chain - ## HITS:1 COG:no KEGG:Arch_1726 NR:ns ## KEGG: Arch_1726 # Name: not_defined # Def: transcription factor WhiB # Organism: A.haemolyticum # Pathway: not_defined # 7 105 7 105 106 103 59.0 1e-21 MPTQGDDQSWVARALCASIEPDVLFVQGASQRQVRMRCYECEVRLECLADALESEANYGV WGGLTERERRAILRHYPHADNWLEWLRTSDEALARELRSPHVPKVLSFVRPQLAGG >gi|292820831|gb|ACYT02000034.1| GENE 7 3307 - 5427 2830 706 aa, chain + ## HITS:1 COG:ML2308 KEGG:ns NR:ns ## COG: ML2308 COG0744 # Protein_GI_number: 15828240 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Mycobacterium leprae # 11 634 6 644 803 249 32.0 1e-65 MSYSHSRAVRPAQLLALLLAFLSVSSLMGFVAAGMLVPVAGPTALVAKSVPSVFNELPGD LQTVAPAEESQLLDSSGGVIAHFYDKQRIVVPSANIADVMKKAIIAIEDKRFYEHNGVDA TGIARALVTNLGESGRQGASTITQQYVRNSLAERGYLEGDAEQVSAATEQTTERKLREIK YALALEKTQSKDEILTGYLNIAPFGPITYGVEAASQRYFSKSASELNYLEAALLAGLVQS PVQYDPLTHPEAAQERRDTVLATMLNQGVITQEEYDAGIATSVDSMLHPTVSSEGCSGAD SSKAYFCDYVLSQFLEDPTFGATRIERERLLKTQGITIRTTLDTAKQDAAYASLTNAIPV GDASGLNDALVSLDPRTGKVLAMAQNTAYGVEAGQTMSNYSADGNFQVGSTFKVFTLLQW FKEGHSAYETVGSTNTFYPNGAFKCDGRSITTEGYQVNDLAGKTGTMNVVRATGQSANQA FVNMASRVDFCSIFETAYDLGVTEDGEVPSPFPANILGSVSASPLQMASVFATIANSGQQ CKPQSIESVTDRDENVLKEFAADCKEVISADIANKTAALLTASAGQYYTSTRLGEGRPFA AKSGTTDGHANTWLTGFTPSLATSAWVGHGDNSSQEVSGVVINGVYHSEIFGETYVGQNI WAPYMTQALAGTPVEAVSNANIGATTPRRSATTTPAPNASPNSNDH >gi|292820831|gb|ACYT02000034.1| GENE 8 5417 - 6397 742 326 aa, chain + ## HITS:1 COG:MT3785 KEGG:ns NR:ns ## COG: MT3785 COG1408 # Protein_GI_number: 15843301 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Mycobacterium tuberculosis CDC1551 # 28 321 12 293 319 168 39.0 1e-41 MTTDVASTLAGATASSTRRGRGFLRTAGAIVGGLGLAGLAAGGAALAWGSVERTMPVLRR YDVPIQGDVPEVTILQIADLHLFPGQDFLLRFLSDVAASERFDMVVATGDNFGSMDALDM VMDAYRPFLSYPGAFVLGSNDYYSPIPKRWSRYLSRSKPHPARVVPDLPYLPMVRRMRQA GWVDLSNAFGTISLPVGTVSLLGTDDAHIHRDRVGAPASSWAAPGVLHLGVTHAPYTRVV SALTSAGSDLILAGHTHGGQIGIPGAGAIITNCDISRPYAKGLKRWEAPDGTEAWLHVSA GLGTSRYAKIRIATRPEASLLHVHPA >gi|292820831|gb|ACYT02000034.1| GENE 9 6613 - 6783 138 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSRAAARRRFIKILLKVSDGYDLSLMGDRALSTHWSVILSIGPIQKSPGPFGPGD >gi|292820831|gb|ACYT02000034.1| GENE 10 6749 - 7282 671 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508118|ref|ZP_02043760.1| ## NR: gi|154508118|ref|ZP_02043760.1| hypothetical protein ACTODO_00612 [Actinomyces odontolyticus ATCC 17982] # 1 177 1 177 177 233 100.0 4e-60 MKRRLAAALLIITLPLGMAACHGTKSRKATPSTPAPAATANANPTQAPGQTPAPTQAPGQ TPGQAPGASGQSVEQACSLVDSQLRSFADSYSDPNDFAQALAAAEATINTLNSPQITNPD VKQASSKVASALSDMVNFGKKYQSNPNAADPNEAQRLTENLTTSLYTLGNLCPAMLK >gi|292820831|gb|ACYT02000034.1| GENE 11 7377 - 7799 414 140 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190623|ref|ZP_06608914.1| ## NR: gi|293190623|ref|ZP_06608914.1| putative U4/U6.U5 tri-snRNP-associated protein Snu66 [Actinomyces odontolyticus F0309] # 21 140 1 120 120 218 100.0 1e-55 MRAHVLDRVAAILVPLLPLGMAACGSQSKADACKLLEKPLNDAGLALVNSAQNGDAANIA DTYTTFATTYEEASKRITNKEIKESVDQVAAGWRAAADNSGVLKADPLSMDVQKLEEYHK IMEDLSAKQTELFNKCGYQH >gi|292820831|gb|ACYT02000034.1| GENE 12 7959 - 8942 1412 327 aa, chain - ## HITS:1 COG:Cgl1229 KEGG:ns NR:ns ## COG: Cgl1229 COG0385 # Protein_GI_number: 19552479 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Corynebacterium glutamicum # 16 319 12 313 335 279 56.0 5e-75 MSTSDAVTTQSPVLSSEDRSARIAVTVFPLLILAAFAIAMITPDTFKPLAPGVNWALGVI MFGMGLTLTLPDFGLIIKRPLPVLVGVVAQYLIMPLVGWALCYVFGLPDAVAVGVILVGC APGGTASNVISYLAKADVALSVTMTSISTLLAPLMTPLLTAWLVGNRMPVDGAAMAKNIL LMVLAPVLGGFIVRFVAGKLVEKILPLLPWISVFGICYVLLVVVSGSVNKILTSGALIIA VVICHNLLGYLFGYLAGRAGRGSDKASRTTAIEVGMQNSALAATLAKTHFASTPETALPA AVFSVWHNLSGALLAMFFRRWKNGGQA >gi|292820831|gb|ACYT02000034.1| GENE 13 9044 - 9934 1027 296 aa, chain + ## HITS:1 COG:no KEGG:jk0566 NR:ns ## KEGG: jk0566 # Name: not_defined # Def: hypothetical protein # Organism: C.jeikeium # Pathway: not_defined # 40 289 6 275 285 94 29.0 4e-18 MHSAALQTQTTPERTADGVTNRAPGRPKPRHHNNPRMRKLARNGWISDQHGAWTMMAFPP LLGWALSFTFSWTVVLMLVAWAMAFQMFSAVCLWVKTPAKRRSRIAPAVLTYGVLAALPG ATLLALRPQLLWWAVAFVPLASSAIYLVWKGRERSLGARAASILAGNIMGPVAFSLAIAD GSPAAVTLHAWATCAAFGLHYIGTVPLVRSMIRGRKDPRWAMGSTLLHAAFTLCAAVAWW FGALEIWPVLMWACLTARAWVMPTLNRTRARPFSPKLIGFSELGWSLLLIASLLIP >gi|292820831|gb|ACYT02000034.1| GENE 14 10004 - 11068 1486 354 aa, chain - ## HITS:1 COG:MT3881 KEGG:ns NR:ns ## COG: MT3881 COG0079 # Protein_GI_number: 15843395 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 5 343 4 346 353 225 42.0 8e-59 MTNLRIRPAVASLPRYVPSKTAPDAVKISSNEMPTPPSPAVLEAIARELETINRYPDLTA APLREALAQRFGVGADQVCVGTGSSAILVAALSAVCQPGSQVVFPWRSFESYPIAIPSVG GEPVPVELLPDGTHDLDAMRAAITPDTVAVIVCSPNNPTGPALTYEEIAGFVADVPEDVM VIVDEAYIDFATKPGVHTAVPLIEEHPNVIVMRTFSKAHALAGVRVGYAIGDPEVIGAIQ ALLVPFGVSSLALAAALASLKDAEGVQRAVAEIIAERERIIPALRGLGYDIPDSQSNFYL IRGDVYGLVEACARVGLIVRPFRVGVRVSVGSREQNDRFLSVAVEFARTAGIGA >gi|292820831|gb|ACYT02000034.1| GENE 15 11086 - 11520 471 144 aa, chain + ## HITS:1 COG:MT1954 KEGG:ns NR:ns ## COG: MT1954 COG1950 # Protein_GI_number: 15841374 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 10 138 28 159 167 70 33.0 1e-12 MDMDHARIIPLRKNGEMDFIARLLATMAGLWVTTRVVSSISIESSSASQTIIVLAAVALV FTAVNSIIKPIVTTLAFPLYLLTFGLFALVTNSALFALTGWLSTSLGFPMTTGGFWSCLA GAVITSVVSSIVSGILRDKKDKRD >gi|292820831|gb|ACYT02000034.1| GENE 16 11551 - 13242 1412 563 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10723 NR:ns ## KEGG: HMPREF0573_10723 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 352 479 416 546 618 100 41.0 2e-19 MTVAFDPNRHVSVSSGSFSVDVNELCATHTLVTYEENLSIGPARLALNAALAEADLASLF APETAAGLISAISAAISALDSLESSVDDLRWKMQDAALTYADANAAASLWEAVPGSPLGA QLSWRSLGAFALSPGGALAAGGVALYHGFQDASASAGVPWLPAVLLPEMTTMVRGRDLWN TAIDGVSFALHGDEESGALFQRDLGRFALDVNSLPAFRGVAQSLAGQGVSQDLNSTSTQP ASGIAALAVPWVVAALYNRMGCGHGASYGVAVRGTDGNARVHHSEAAARIPSGALDARTQ AALAAMPDAAPDTHYEGIATSADTIEHIVDMHGGDADNGEIAIEEHVTVGEDGATTRSWT VDIRGTQSFAIGQSGPQDMTTNLQGVAGMASDQLDAIMEAMDAAGITPEEAVEFSGHSQG GIMAAQLAADPAVRARYNVVSVVTAGSPTATVAPSDVPVLSYENSGDIVPGLDGNATRGD NVTTVRFHDYEATAHPEDPVPSSHSAPLYVDEIRSTLDAARASSDPGLSALAAAEARRTQ ALSLTQDTQTTIHHYQTRRITQG >gi|292820831|gb|ACYT02000034.1| GENE 17 13239 - 13544 206 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190629|ref|ZP_06608920.1| ## NR: gi|293190629|ref|ZP_06608920.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 101 6 106 106 182 100.0 4e-45 MILDPTSPGLSLQAAQGLVDGLRGVLVGATCPQWTGVGGDSYRARCGETIAGAQAVLDQI QHALDLIPAFDTERTQGLARSLSESAESAVLHPELVMLGAW >gi|292820831|gb|ACYT02000034.1| GENE 18 13788 - 15245 2101 485 aa, chain + ## HITS:1 COG:RSc2720 KEGG:ns NR:ns ## COG: RSc2720 COG0015 # Protein_GI_number: 17547439 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Ralstonia solanacearum # 24 482 10 454 457 412 50.0 1e-114 MSDTMTLFSTAHGYSDLAGGGEPLSPLDGRYRAVAAPLANYLSEAGLNRARVHVEIEWLI FLLDNSVLPGAPTLTDAERDYLRALTRDFGADHIKRLGEFEAVTRHDVKAVEYLIGEYLE AASEKLGEGTNLPSLREVVHIFCTSEDINNLAYALTIKAATEQVWLPAIRALLDRLRGLA EAGAAVPMLAHTHGQPATPVTVGKEMAVFAHRLSRQIKRVEATEYLGKINGATGTWAAHV VSVPGADWPTLARSFVEGLGLTWNPLTTQIESHDWQAELYADVARAGRIAHNLATDAWTY ISMDYFHQNLAAQGSTGSSTMPHKVNPIRFENAEANLEVSNALLDSLGATLVTSRMQRDL TDSTTQRNVGVAFGHAVLAYDNLVRGLDGIEINAARMAQDLDANWAVLGEAVQQAMRAAA IAGATGMANPYERLKELTRGHEVGAEDMREFIAGLGLPAEVEERLLALTPATYIGLSERL ARWEA >gi|292820831|gb|ACYT02000034.1| GENE 19 15336 - 15743 388 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190631|ref|ZP_06608922.1| ## NR: gi|293190631|ref|ZP_06608922.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 135 8 142 142 272 100.0 4e-72 MDIDWMMMVIPAIDYEDLRRIVWEGAQRNGFAYSATPDYSGKNNRRSVAVGDEDGTLVAF THLEGSGFINISFHSGCMLPTHTYDLDTPYKQLPLPSVEEMFPNLRIVDAFDENSNLNPE LSSQSGPQSGTQSGS >gi|292820831|gb|ACYT02000034.1| GENE 20 16023 - 16691 646 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190632|ref|ZP_06608923.1| ## NR: gi|293190632|ref|ZP_06608923.1| hypothetical protein HMPREF0970_01256 [Actinomyces odontolyticus F0309] # 1 222 1 222 222 414 100.0 1e-114 MKWTPARVGLVAAVVVAGLYGWDAVMPRQGKLVPFPQRVSFEEYMSRQLPELSRMAGQVA AETGGELTVMGLPYVQACGIGNTQGYRVVGYSTVAPQISFDRLGEVVNTHRRDGTSGLWM QDDFREDGSRKIYFTDNDGNSAQFKYTETGIEMRSYSACLPSSHALNDPGQFVLPSVEEA FPGVHVTVSDNTDPDLHPVPTLTPGAHVAPQSGAQSGAQSGE >gi|292820831|gb|ACYT02000034.1| GENE 21 16697 - 17365 331 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190633|ref|ZP_06608924.1| ## NR: gi|293190633|ref|ZP_06608924.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 6 222 1 217 217 432 100.0 1e-120 MSSRWMMTAAAACTSLLLAACVPGLSDDAGLYFGRGDESESNSERQTMEVFIDETVPRYM SIVEDVAVEAGGTLGVGAEPYVWSCGPTSNGFDIRLARYYIPLIDFDDLRRVVADGAQRY GYGYTAEPVPRDEDKRRSVVLGDQDGNLLSFHHLEDDTISVFFDSGCLPASQPDGMSQRL RFPEPEELFSRVTIVDAYDANEQRNPLIFRQVTTGSDKKSGS >gi|292820831|gb|ACYT02000034.1| GENE 22 17370 - 18044 338 224 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190634|ref|ZP_06608925.1| ## NR: gi|293190634|ref|ZP_06608925.1| putative oxidoreductase alpha subunit [Actinomyces odontolyticus F0309] # 1 224 3 226 226 437 100.0 1e-121 MTKKWTPVRVGAWCVVVVAVLGGCHAAKSRDAEFVPFPQRVSIEEYTSRQLLEISSMAVQ VAAETGGELTVMGLPYVQVCGSGDTQGYRVVGYTTVAPSMSFEQLEKLVTENKPDWAVAV QVDKENDRDATRGIRLIDNYGGLAEFKFSEDSIAVRSRSACLPTDKPLDDPGQFVLPSVE EAFPGVRVTVSDNTNPDLHPLPTLTPGAHVAPQSGAQSGAQSGE >gi|292820831|gb|ACYT02000034.1| GENE 23 18047 - 18733 579 228 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190635|ref|ZP_06608926.1| ## NR: gi|293190635|ref|ZP_06608926.1| hypothetical protein HMPREF0970_01259 [Actinomyces odontolyticus F0309] # 1 228 1 228 228 466 100.0 1e-130 MNRKRLVALMSSACASLLLAACIPIPADDADLYFGRGSGSIPISEGQTTEVHIRDTLPRY LGIIEEVVVKSGGAVAMNGKNRVDGCATKDTTDMDIHWDSMVIPAIDYEDLRRMVVEGAQ RNGFGYSWDPVRRDKLNSRTVAVGDGYGNSLIFYHHEAQNRIIISLYSGCMFPSQPLDPD IPRSSYPLPSPEEMFPNLTIVRAFDDNGGENPELRPQSGIQSGAQTGE >gi|292820831|gb|ACYT02000034.1| GENE 24 18730 - 20415 757 561 aa, chain - ## HITS:1 COG:no KEGG:SACE_1016 NR:ns ## KEGG: SACE_1016 # Name: not_defined # Def: hypothetical protein # Organism: S.erythraea # Pathway: not_defined # 1 513 1 503 566 137 30.0 1e-30 MATWADIQSWDHNAIIEAEDLIEEKVREAREIIADLEHAANDIRSQGEGPDRMRQRLTEI QDKLDSRLNELTEYALATAELHGYVSRVVAKRKSAWEVAAEVGYDIPESGVVQPSLPEMR FEPVASKFAELRNCVDDAVRIATEAEETVGPRYQALADGQYVLAEGRHSASAGLADDADP SWSPEEVSVWWALLSESEREALINKDPEKYGNLNGIDMASRARANELALNGHLDAAGNRI PGTGLIEKTQNELDELNQEIERARENGQEVSSDLRDKQENLQNRLADLEAVRDQVRGNAG ATLLVLEPGELGENVRAAIAIGDVDNAQHVATFVPGMGSNFRDNGRLNVEFAKNLKWAAD TYGAPTDGSVATIAWIGYEAPPDIVKTWDPSVMSIDKAEAGAEKLNGFVTGIHSWRSERG LDVHQSIIPHSYGSTTAGVAMRDIGEGVVDDLVYTGSPGAGVHSVGTLGVDPEHTWVSAT PHLDPVRGRGPDYTFGRNPEHLEGIGHLSGDTSGGEGYKHGIWHRPDANHSSYFHKPETE DKHNYALEDIGKVIADRKKRQ >gi|292820831|gb|ACYT02000034.1| GENE 25 20415 - 20765 301 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190637|ref|ZP_06608928.1| ## NR: gi|293190637|ref|ZP_06608928.1| putative integral membrane protein [Actinomyces odontolyticus F0309] # 1 116 1 116 116 178 100.0 1e-43 MAGDLVIEEGDLEVLRDRTRDLSGRLQSVTVATAGDYISSGVGGSELAGQGRGAGDTIDE AVIALTRDLDDFSQSVNDSINEYAATEDDAAVSFQQVRHDGPAMTMDDLLRMREEQ >gi|292820831|gb|ACYT02000034.1| GENE 26 20892 - 21560 586 222 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190638|ref|ZP_06608929.1| ## NR: gi|293190638|ref|ZP_06608929.1| hypothetical protein HMPREF0970_01262 [Actinomyces odontolyticus F0309] # 1 222 1 222 222 414 100.0 1e-114 MKWTPARVGLAAVVVVAGLYGWDAAMPRKGELVPFPQRVSFEEYMSRQLPELSRMAGQVA AETGGELTVMGLPYVQACGIGNTQGYRVVGYSTVAPQISFDRLGEVVNTHRRDGTSGLWM QDDFREDGSRKIYFTDNDGNSAQFKYTETGIEMRSYSACLPSSHALNDPGQFVLPSVEEA FPGVHVTVSDNTDPDLHPVPTLTLGAQADPQSGAESGARSGS >gi|292820831|gb|ACYT02000034.1| GENE 27 21566 - 22033 441 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190639|ref|ZP_06608930.1| ## NR: gi|293190639|ref|ZP_06608930.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 155 27 181 181 310 100.0 2e-83 MESGGVIADVGHSESWACRSAVNGYEISAVRFNIPLIDFDDLRRIVGDAAQRYGYSYSTD PVPRDKENMRSVGLGDQDGNSLIFDHFEDDVIFVQFSSGCLPSLRSRDIYGQFALPSVQE MFPRLTVVDAYDANEQRNPLIFRQVTTGSDKKSGS >gi|292820831|gb|ACYT02000034.1| GENE 28 22230 - 22913 322 227 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190640|ref|ZP_06608931.1| ## NR: gi|293190640|ref|ZP_06608931.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 6 227 1 222 222 449 100.0 1e-125 MSSRWMMTAAAACTSLLLAACVPGLSDDAGLYFGRNDGSEAISERQTVEVYIRDTAPRYA GIIEDVAREAGGVLGVNGDSRYRDCATRDETEVNIAWADLYVALIDYDDLRRIVWEGAQR NGFAYSATPDYSGKYNSRSVAVGDEGGTLVAFTHLEGKGFINISFHSGCMLPTHTYDLDT PYKQLPLPSVEEMFPNLRIVDAFDENSNLNPELRPQAGPQSGAQSGE >gi|292820831|gb|ACYT02000034.1| GENE 29 22918 - 23592 394 224 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190641|ref|ZP_06608932.1| ## NR: gi|293190641|ref|ZP_06608932.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 224 3 226 226 441 100.0 1e-122 MTKKWTPARVGAWCVAVAAVLVFCWLTLMRFGGVVPFRERQSLEAYVDERLPQISQIAGQ VAAETGGELTAMGLPYVQVCGSGDTQGYRVVGYTTVAPSMSFEQLEKLVTENKPDWAVAV QVEKEKDRDATRDIRLIDTYGGLAEFKFSEDSIAMRSRSACLPTDKPLDDPGQFVLPSVE EAFPGVHVTVSDNTDPDLHPVPTLTPGAHVTPQSGAQSGAQSGE >gi|292820831|gb|ACYT02000034.1| GENE 30 23595 - 24266 471 223 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190642|ref|ZP_06608933.1| ## NR: gi|293190642|ref|ZP_06608933.1| putative citrate lyase acyl carrier protein [Actinomyces odontolyticus F0309] # 1 223 2 224 224 461 100.0 1e-128 MKKKVLSCLSALSVSWLLAACVPGLSDDAGLYFGRSSGSIPLSEGQTTEVHIRDTLPRYL GIIEEVVVESGGVLGVSGKNRVDGCATKDTADMDIHWMMMVIPAIDYEDLRRMVVEGAQR NGFGYSWDPVRRDKLNSRTVTVGDEYGNKLSFYHHEAKDGIVIDLYSGCMFPSQPLDPDT PRWSYPLPSLEEMFPNLTIVQAFDDNGDENPELRPQSGTQSGG >gi|292820831|gb|ACYT02000034.1| GENE 31 24266 - 25960 881 564 aa, chain - ## HITS:1 COG:no KEGG:SACE_1016 NR:ns ## KEGG: SACE_1016 # Name: not_defined # Def: hypothetical protein # Organism: S.erythraea # Pathway: not_defined # 171 550 186 533 566 119 31.0 3e-25 MATWADIQSWDHNAIIEAEDLIEEKVREAREIIADLEHAANDIRSQGEGPDRMRQRLTEI QDKLDSRLNELTEYALATAELHGYVSRVVAIRESAYEVAAELHETIPESGYVMTPPMEMS NNPDRYEKYRDLHACIKSAVDLATEAETTVGPRFKALADGQYALAEGRHSESAGLANDAD PSWTPEEVSVWWKLLSDSEREALINRDPEKYGNLDGIDMASRAKANELALNGYFDAAGNR IPGLLEKAQKEYDEAKAAYEKGKDSFWGSQYSDDEGYERLLNAHNKLNDLKAIKKALDAK SDNSLGDNSDISLISLEYGEPGKNVLAALAIGDVDNAEYVATLVPGMTTNCRDSTALNLS YASNLRDAAVKAGADRGNVATIAWLGYDAPPALPDPSVASTAQAEAGAVSLRNFMTGIHS WRAERGLDVYQTGITHSYGSTTGGIAMRSIGKDVVDGFAYTGSPGAGVASVGTLGVDKDH VWVSAVPHHDVVQGVGTDGDFGLDPKDLKGIGHLSGDASGAKDYSTFGLNPVANHSSYFV APEAGKENHALDDLGKVIADAKER >gi|292820831|gb|ACYT02000034.1| GENE 32 25960 - 26310 316 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190644|ref|ZP_06608935.1| ## NR: gi|293190644|ref|ZP_06608935.1| putative chlorosome protein [Actinomyces odontolyticus F0309] # 1 116 1 116 116 180 100.0 2e-44 MVGDLVIEEGDLEVLRDRTRDVASRLQSVSVATAGDYISSGVGGSELAGLGRSAGETIDD AVMAVSRDLDDFSQSVNDSINAYNATENDAAVTFQQTAHGGPAMTMDDLRRKMEEQ >gi|292820831|gb|ACYT02000034.1| GENE 33 26443 - 27084 624 213 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190645|ref|ZP_06608936.1| ## NR: gi|293190645|ref|ZP_06608936.1| putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Actinomyces odontolyticus F0309] # 1 213 1 213 213 370 100.0 1e-101 MTDPNAPLREVRRWMRVSTPVNKAASAGLRGRLPQIAGPLMIGALGVGALGAGIAWRALS STRGTGRTQRFVDLATAALDSGFPVRAHEAGASEGRAPRRVVHVEVGEGFGRPSLVSIDI VVASSDALSEHEAATRALDAITRATWNNPEMAPVSVRARVLLAHDEAGDLEASGAQTDTV VDMSALGFADEIARPDELYDRYGAPECDPAWRP >gi|292820831|gb|ACYT02000034.1| GENE 34 27081 - 28091 920 336 aa, chain - ## HITS:1 COG:no KEGG:Krad_4292 NR:ns ## KEGG: Krad_4292 # Name: not_defined # Def: hypothetical protein # Organism: K.radiotolerans # Pathway: not_defined # 47 231 314 500 548 64 35.0 4e-09 LLRDSDADPAFQEPLPGHPEAQIRRVDAPALLSDMCADIDELYWSRTIGPAVKITRVGEG DARRWLLSLVGTESMTWRSTNNPADAETNIRLMLGLESAMSVGVVRALHAAMERDGVPTD RWKREPVLICGHSQGGIVAAALASVPADEAGVNVAGILSTGGPNRRIRVRPDVVTVAVYH DQDVMPSLDGSPDRAPDRRVTVGRSLVRPRTRPLYYAHSSSTYTETVRLLERKVRVTPWG RLASSMAALQDFLPTSGEPTRVMHYEIWQDILTPTSESTWDTVAALERGGSFEPATYPID YAVTAPRLPRIARARRRAALPPRIASALSSLRKDRS Prediction of potential genes in microbial genomes Time: Tue May 17 06:38:21 2011 Seq name: gi|292820789|gb|ACYT02000035.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.12, whole genome shotgun sequence Length of sequence - 47444 bp Number of predicted genes - 37, with homology - 36 Number of transcription units - 20, operones - 10 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 454 454 ## gi|154508133|ref|ZP_02043775.1| hypothetical protein ACTODO_00627 2 2 Op 1 . + CDS 601 - 891 430 ## COG1937 Uncharacterized protein conserved in bacteria 3 2 Op 2 . + CDS 907 - 1152 459 ## Xcel_3258 heavy metal transport/detoxification protein + Term 1173 - 1212 8.0 4 2 Op 3 . + CDS 1238 - 3793 2918 ## COG2217 Cation transport ATPase + Term 3811 - 3856 15.6 5 3 Op 1 3/0.000 - CDS 3889 - 5118 715 ## COG1404 Subtilisin-like serine proteases 6 3 Op 2 . - CDS 5121 - 6341 551 ## COG1404 Subtilisin-like serine proteases 7 3 Op 3 . - CDS 6338 - 6868 443 ## gi|154508099|ref|ZP_02043741.1| hypothetical protein ACTODO_00592 8 4 Tu 1 . + CDS 7200 - 7841 182 ## gi|293190691|ref|ZP_06608945.1| hypothetical protein HMPREF0970_01278 9 5 Op 1 . - CDS 7884 - 8411 631 ## gi|293190692|ref|ZP_06608946.1| conserved hypothetical protein - Term 8433 - 8462 -0.5 10 5 Op 2 . - CDS 8469 - 9011 915 ## gi|293190693|ref|ZP_06608947.1| conserved hypothetical protein 11 6 Op 1 1/0.333 - CDS 9256 - 10758 1387 ## COG3463 Predicted membrane protein 12 6 Op 2 . - CDS 10755 - 11603 752 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 13 6 Op 3 . - CDS 11695 - 12576 1262 ## Arch_1747 hypothetical protein 14 6 Op 4 . - CDS 12658 - 14262 2171 ## COG1070 Sugar (pentulose and hexulose) kinases + Prom 14432 - 14491 2.4 15 7 Op 1 . + CDS 14512 - 14754 359 ## gi|293190700|ref|ZP_06608954.1| toxin-antitoxin system protein 16 7 Op 2 . + CDS 14771 - 15001 79 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system + Term 15030 - 15074 -0.7 17 8 Tu 1 . - CDS 15003 - 15602 546 ## COG1309 Transcriptional regulator - Prom 15637 - 15696 2.6 18 9 Op 1 . - CDS 15818 - 16735 1007 ## COG0561 Predicted hydrolases of the HAD superfamily 19 9 Op 2 . - CDS 16732 - 18009 1871 ## COG0172 Seryl-tRNA synthetase 20 10 Tu 1 . + CDS 18264 - 19583 1585 ## Jden_0264 diacylglycerol kinase catalytic region 21 11 Tu 1 . - CDS 19669 - 20676 1023 ## COG0077 Prephenate dehydratase - Term 20693 - 20736 -0.5 22 12 Op 1 . - CDS 20849 - 23125 2453 ## Xcel_2576 hypothetical protein 23 12 Op 2 . - CDS 23129 - 23794 1096 ## COG0586 Uncharacterized membrane-associated protein 24 13 Tu 1 . + CDS 23869 - 26883 3363 ## COG0392 Predicted integral membrane protein + Term 26906 - 26953 11.5 25 14 Tu 1 . - CDS 26949 - 27413 446 ## gi|293190711|ref|ZP_06608965.1| conserved hypothetical protein 26 15 Op 1 3/0.000 - CDS 27720 - 31541 4279 ## COG1404 Subtilisin-like serine proteases - Prom 31672 - 31731 2.7 27 15 Op 2 3/0.000 - CDS 31774 - 35598 5240 ## COG1404 Subtilisin-like serine proteases - Prom 35728 - 35787 4.0 - Term 35741 - 35797 19.5 28 16 Op 1 . - CDS 35830 - 39648 3988 ## COG1404 Subtilisin-like serine proteases - Prom 39716 - 39775 2.7 29 16 Op 2 . - CDS 39870 - 40220 498 ## SPCG_1257 pneumococcal surface protein A 30 16 Op 3 . - CDS 40102 - 40749 414 ## gi|293190718|ref|ZP_06608972.1| conserved hypothetical protein - Prom 40859 - 40918 2.8 + Prom 40713 - 40772 2.9 31 17 Tu 1 . + CDS 40912 - 41025 90 ## - Term 41016 - 41052 0.6 32 18 Tu 1 . - CDS 41089 - 42810 1953 ## COG4425 Predicted membrane protein 33 19 Tu 1 . + CDS 43070 - 43582 525 ## gi|293190720|ref|ZP_06608974.1| conserved hypothetical protein 34 20 Op 1 1/0.333 - CDS 43611 - 44372 677 ## COG0500 SAM-dependent methyltransferases 35 20 Op 2 . - CDS 44462 - 45985 1916 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 36 20 Op 3 1/0.333 - CDS 45990 - 46583 420 ## COG0563 Adenylate kinase and related kinases 37 20 Op 4 . - CDS 46580 - 47443 903 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters Predicted protein(s) >gi|292820789|gb|ACYT02000035.1| GENE 1 1 - 454 454 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508133|ref|ZP_02043775.1| ## NR: gi|154508133|ref|ZP_02043775.1| hypothetical protein ACTODO_00627 [Actinomyces odontolyticus ATCC 17982] # 1 151 1 151 493 254 98.0 9e-67 MKRRPRRRYRAIRRVPQAYPGLYLRLKVAPVLPALAATVAVGALVEISALPEDVRSRARS LSDDMGTAISEKSQRIFFDTPGLDTLLIRSLSHVARRTATVGRAWARTVVAIGADRDGRM ARMLPLIPRRGYDALMTGMLTIGTAVGALRG >gi|292820789|gb|ACYT02000035.1| GENE 2 601 - 891 430 96 aa, chain + ## HITS:1 COG:MT0200 KEGG:ns NR:ns ## COG: MT0200 COG1937 # Protein_GI_number: 15839569 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 96 1 96 96 100 56.0 7e-22 MSNEHGYHGNTENHLARLRRIEGQVRGLQRMISQGEYCIDILTQVSAVQSALDSVAVNLL KDHMNHCVVTAARESDEAAQAKVNEAAAAIARLIKS >gi|292820789|gb|ACYT02000035.1| GENE 3 907 - 1152 459 81 aa, chain + ## HITS:1 COG:no KEGG:Xcel_3258 NR:ns ## KEGG: Xcel_3258 # Name: not_defined # Def: heavy metal transport/detoxification protein # Organism: X.cellulosilytica # Pathway: not_defined # 11 77 7 73 160 70 58.0 2e-11 MTTDIDRTIELSVDGMTCGHCVMSVSEELSEIPGVKNVEVILNSGGTSKVTVLTDTPLDD AALSDAVSEAGFTLVGIARDF >gi|292820789|gb|ACYT02000035.1| GENE 4 1238 - 3793 2918 851 aa, chain + ## HITS:1 COG:Cgl0382 KEGG:ns NR:ns ## COG: Cgl0382 COG2217 # Protein_GI_number: 19551632 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Corynebacterium glutamicum # 15 509 89 564 755 402 49.0 1e-111 MSTDSVTPNRITTASSHEAPPASDPTPQVGEGTHAHAADLRRRLIVCAPLGILAMILSMV PAWQFTGWQWVVAVASIPVVTWGAWPFHRAAFAAGRHGSTTMDTLVSLGVISSTLWSWWA LLWGGAGMLGMRMHMSLIPRAAHAGHAEIYFEGACMIVVFLLTGRYLEARARYRAGDALR SLLRMGAKEATLVSVDPATGERTETVVPASSLQVGDLFAVRPGEKVATDGVIVEGSSALD TSLLTGESVPVDAAPGDTVTGATVNTWGSLLVRATRVGSDTTLAQIGRMVAEAQAGKAPV QRLADQISGVFVPIVIAVSLLTLGGWLLAGGSVQAAFTAAVAVLVVACPCALGLATPTAI LVGSGRASQLGILIKNAEILEQTRSIDTMLLDKTGTVTTGVMSLESVAVAPGAGEASALS LAASVESHSEHPVARAITSGAADRGLSLVPVTAFANRPGLGVVGITSQGGVLVGRPSWLA SLGIDVPTSLLDAVREAEASGASAVVAALAPQLGQVATTEAVTPMPEAHTHVVLPGPDAK LPLATLTMSVGGMTCASCVSRVERKLGKLDGVKAEVNLATESARITLTAPHSDEELEAVV NAAGYSGTVTSRSEAATADGAPAAGGSASGDTGTPTQPGTTPGAGEREGAPTSSLVIPEH VEGRAIAALVVRDTVKDSSADAIAQLRELGIEPILLTGDNEAAARHVADQVGIERVIAGV LPDGKRDTVADLQAEGRTVAMVGDGVNDAAALAQASAKGLGIAMGSGTDVAIEVADMTLM NSSLTSAATAIRVSRRTLRIIKENLFWAFFYNVLMVPLAIAGLLSPMLASAAMACSSVFV VLNSLRLRTAK >gi|292820789|gb|ACYT02000035.1| GENE 5 3889 - 5118 715 409 aa, chain - ## HITS:1 COG:slr0535 KEGG:ns NR:ns ## COG: slr0535 COG1404 # Protein_GI_number: 16332024 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Synechocystis # 74 291 136 361 613 82 34.0 1e-15 MTFARSDAQLALRSPFAFAGRAGRAARALTTAVSALALAVGALTLAPTPAFADDAVPSQD YFSYYPLDTVRAKGYTGKGVTIAAIGGPVDTSDPALKGAKITDKSRCTVEATPDGKRHGT DMAIILVSPTTGVAPDATLYTYQSSTVSTTSNGTCSSDGGRLNTFASLINQAVEDGAQII SVSQSVSEDSPELKWAIANAISKGVIIVASAGNGASDDNVTHIGRFSGVVGVSAINADGT FASYSSWGDGVVTAAFGGPFNTFDPATNQPQTVNGTSVSAPLVAGMLALTRQRWPEATTN QILQLLVRTGLNPNHNWDQYTGYGAAALGSLVNTDPSQYPDENPIIPKPNGSSPSVDEMQ DYMDGIAGATLTDSFPSSYVYRGTDEGILLRDNKTITVHLGTSPRYHRK >gi|292820789|gb|ACYT02000035.1| GENE 6 5121 - 6341 551 406 aa, chain - ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 60 307 101 340 361 78 29.0 3e-14 MNFFSHATLRSHFGCEGRVRRAARALTTAASALALATGVLTLAPAPTQADDAVPSQEYFS YYYLDSAREKGFTGKGVTIALIDGPVNTSAPALKGAKITDKSRCTIEASPENARHGTDMA TILVSPYTGVAPDATLYTYQVSNLTSVSGGSCDTSTGRLDTFGKLINQAVEDGAQIISIS QSDQDGTAELKWAIANAISRGVIIVNSAGNGASDDNVTHIGRFSGVVGVSAINADGTFAS YSSWGDGVVTTALGGPYNTYDVNTGAPTTVNGSSISAPIVAGILALTRQKWPNATTNQIL QLLVHTSLNPNHEWNKYTGYGAASLADLINTDPSQYPDENPIIQKPNGSSPTVKEIQDYT DGIAFSSYQGDFPSSYVYRGVDEGVVSVAVEGMELHLGTSPRYHRK >gi|292820789|gb|ACYT02000035.1| GENE 7 6338 - 6868 443 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508099|ref|ZP_02043741.1| ## NR: gi|154508099|ref|ZP_02043741.1| hypothetical protein ACTODO_00592 [Actinomyces odontolyticus ATCC 17982] # 2 176 325 514 514 147 51.0 4e-34 MDHPLWRLNGGAASDASAAGRLGGAGALGAGALGVRGAAQMGTNGAAGGLAGMRGITGTT NGLGAAGASALKAGSYSGSGFGSYTPPAGANGGTSGAGGAAGRGSGGFMGTGAGAGAGAG KEDKKRRRRQYMAFKFEDDEDALPAGYVNPLSQTYGSDTDIAPARRTDDGWDPRQW >gi|292820789|gb|ACYT02000035.1| GENE 8 7200 - 7841 182 213 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190691|ref|ZP_06608945.1| ## NR: gi|293190691|ref|ZP_06608945.1| hypothetical protein HMPREF0970_01278 [Actinomyces odontolyticus F0309] # 1 213 1 213 213 411 100.0 1e-113 MAITAVTSPTAGVVVLLTFFLFVIFQAFPGFYRIRPSLHLHANCLSTGVKHREDTLRSGF ALCIGLGFDSLHVCCARSEELAHGADTRAGLTVGNRDDQVVAHCFSLCVNEVCGNLLTLG KCSRHDATTIRVAPKATLVCLSVLRNSLDRCVNPAVHGGTGCTGKAMAVSIGAEEFDSVV EVFQGPGMILIPRLQSLIGAGSLHEGFETFVHR >gi|292820789|gb|ACYT02000035.1| GENE 9 7884 - 8411 631 175 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190692|ref|ZP_06608946.1| ## NR: gi|293190692|ref|ZP_06608946.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 63 175 1 113 113 178 100.0 1e-43 MTGNPDLEYDHERQTVAAPKVVESWGAMTGSRKCTSALGSAQTSTFWGHEEGPTAVRIRS ADMFDAVSELLNRETAMLKDFEEKMHAAMTRFTGAEYENALGFKETQADMEAQSIRSKEQ DEYTALLHRIGLTLEDVIHLPVDSGTSTTVPQSSSGGAGASTGSGPATQPSQKKI >gi|292820789|gb|ACYT02000035.1| GENE 10 8469 - 9011 915 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190693|ref|ZP_06608947.1| ## NR: gi|293190693|ref|ZP_06608947.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 180 1 180 180 325 100.0 1e-87 MSSLVPRRACAATSSLLLAAVALSGCSLFGGGGSKSTDISKLPNIPQGQKQQLVQQMQSA SGDQKKQIAAKAVALNNMVGAQLVGVEPSLIASQQFKLDPKGQTVVNKNDMVYQMMSATD FWRLGNDTYDLCVEQNCEYYSSWTVDVEGSGSDLTYVWTLKIEGPDQPDKPLVRRFKVAK >gi|292820789|gb|ACYT02000035.1| GENE 11 9256 - 10758 1387 500 aa, chain - ## HITS:1 COG:sll1352 KEGG:ns NR:ns ## COG: sll1352 COG3463 # Protein_GI_number: 16330152 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Synechocystis # 21 234 18 226 472 74 28.0 4e-13 MKGPDRLAVGRFIATWWLPAVIACAVGALYVCYSVAQWRALVAPSWDLGIFAEAVQAYSR FEAPIVPIKGPGYNLLGDHFHPILALLGPIFRLFPSALTLLVVQDLLIAASVLPIARLAQ RLLGRGGALLVGLAYGLGWGLQGAVGAQFHEVCMAVPLLAFGGVAFVERRWGACMVWLAP LVLVKEDLGLTVFVAGLALAWRRRGEGRSGVLRSIAYALFGIVAFVLTVKVLLPMMNPAG TWAYSLDGSATGAGTPTGGTTAARDIPSLWDILTTPSVKLVTLIVLAAGAGFVGTASPWF ALVAPTLAWRFAGSVESYYGWDSWHYNAVLVPIAACSLLDVIDQWLAPERADAETDADAE DEATASSNLGWRVAAWAVACVPAASLALTASSLPLWHLPDLKEDPRMAAALGALDAVPEG VSVETDTTLLARLVPGREVYWVGTTGSMDTPPEYVVIDARSYAWGDQQVDAESWGSAAHP GHSYETVYAKQGFRVVRRTS >gi|292820789|gb|ACYT02000035.1| GENE 12 10755 - 11603 752 282 aa, chain - ## HITS:1 COG:BH2769 KEGG:ns NR:ns ## COG: BH2769 COG0463 # Protein_GI_number: 15615332 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus halodurans # 14 231 3 216 222 78 28.0 2e-14 MNYPAGSRGSQPQRVAAVIAAHNVGRAVAATVRACRAIPSVDLLIVVDDGSTDDTGRAAR AAGAVVVRHSVERGRASAIETGVKVAAMRDRPDGPPRHILLLSPDLGDSAVEATALVEAV FARQADMAIAVPATGREYSGYGPGVARRLIRRKTGWNCHYPLSYQRCLTREAIDAAMPFS GRYVLEASTTINVLRAGLSVMEVPCNFAHSGADRSLGSLNRPARMFDAVRATVSQLFHSD ARSKRRADHEQGIGVPYPAPASARDEAEASDPSDARRTEMVG >gi|292820789|gb|ACYT02000035.1| GENE 13 11695 - 12576 1262 293 aa, chain - ## HITS:1 COG:no KEGG:Arch_1747 NR:ns ## KEGG: Arch_1747 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 1 293 1 285 285 227 46.0 3e-58 MGKASRRKKVTDPAKLKAYRPPIPFVARPYEGLPKEIELVAMRELIPAATMTARTDADHG AVEFDFVTLLPEGHPAMVRPDGRILVALQTRSNSADLSHDAGAALLAAIAAKEAGDEGVI SIDVREPSERLQDIVDVDSFTDMKLEEDFSFWFDPAEEIDDQTRRALEQNRDEIIPTEPV PGVPGAYWCEMNRNFVRFLTNNDETKLFDALARLAARGEANVGEGSRYVGSFRACGLIVP VFELPEGASAADVAPGTQALAKALKEALKVTERLDDKERRARQGLVSRAVTIR >gi|292820789|gb|ACYT02000035.1| GENE 14 12658 - 14262 2171 534 aa, chain - ## HITS:1 COG:CAC1344 KEGG:ns NR:ns ## COG: CAC1344 COG1070 # Protein_GI_number: 15894623 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 9 522 11 523 534 536 52.0 1e-152 MSTDPRAAIAAADTALGIEFGSTRIKAVLIGPDHEVLATGGHGWENHLEGGLWSYTLDEV VAGLRAAYASLVADVRERYDVIPASYGSIGISAMMHGYLAFDAEGNLLAPFRTWRNTNTG RAADELTRLFGFNIPLRWSIAHLHQAVLDSEEHAPRVARLTTLAGWVHHQLTGRHVLGVG DASGMFPIDSEAGTYVESYLNQYEALVEARVPWRLRDVLPTVLSAGEDAGTLTPEGAALI DPTGTLQAGIALCPPEGDAGTGMIATNAIAQRTGNISCGTSVFLMAVLERSLAELHTEID MVTTPDGSPVAMVHSNNGASELDAWVGWFADFARLVGADVSVPAIYDALYNHALTGEADA GGVMAYNTLSAEPLIGQEVAQPVFTHTVDARVSLANAVRAQLMSIFAAVRIGVDILRGEG VHLDSLFAHGGLFKTPGVAQQILADSLNIPVSVGDTAGEGGAWGIAVLARYRAVLAGDEA APALPDYLSERVFAGASVSTLEPTHEGVAGYERFLDAYRAALPGVEAIARGSAR >gi|292820789|gb|ACYT02000035.1| GENE 15 14512 - 14754 359 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190700|ref|ZP_06608954.1| ## NR: gi|293190700|ref|ZP_06608954.1| toxin-antitoxin system protein [Actinomyces odontolyticus F0309] # 1 80 1 80 80 116 100.0 4e-25 MSTARVARSVKLDPEIDARLTALAQRTGRTKSFYMNRAIESALEEIELAYSLQAELEDIR AGRVASVSLDEAVKSLGLEG >gi|292820789|gb|ACYT02000035.1| GENE 16 14771 - 15001 79 76 aa, chain + ## HITS:1 COG:FN0497 KEGG:ns NR:ns ## COG: FN0497 COG2026 # Protein_GI_number: 19703832 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Fusobacterium nucleatum # 1 76 13 89 90 77 50.0 8e-15 MKQLSKLDKPTARRIIDYLRETASGEDPRSRGKGLTGNLAGFWRYRVGNYRIIASIEDDE LLILAIHIDHRSRIYR >gi|292820789|gb|ACYT02000035.1| GENE 17 15003 - 15602 546 199 aa, chain - ## HITS:1 COG:CAC3433 KEGG:ns NR:ns ## COG: CAC3433 COG1309 # Protein_GI_number: 15896674 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 17 121 1 106 185 65 29.0 6e-11 MFLRSADKHGREAEKNLDLRIRKTRRAIRSGLVKVCQAKPYAHVSVTDICAASMVSRTTF YDHYTDKDALLAEVVSFLLEEITPALEGLWFGEGRDAHVVARHLADVYARNGQALKTLLA IRVGGEGDLHEQLYRTCCSVFTDWARGRMDDEVLPLAADVYASVVLTFIERSATKPLTDK ELAAIDRARELFIAGFGAQ >gi|292820789|gb|ACYT02000035.1| GENE 18 15818 - 16735 1007 305 aa, chain - ## HITS:1 COG:DR0240 KEGG:ns NR:ns ## COG: DR0240 COG0561 # Protein_GI_number: 15805275 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Deinococcus radiodurans # 42 293 17 276 284 100 34.0 3e-21 MSQERFLTVPSSGEVARPFEVLLDEASAALPADFPTSAGEVLVALDIDGTILTAAGATPR VLEGIHGLAAAGAQVLIASGRALEGVIPVLGALEFTDGWALCNNGATLVRVSGGECEIVE ERTFVPGPILEEIAAAVPGSVFASMPHPDILLSAPFPNNEIEGSDHRIVSMEELASTPTP KIVVRAAEMDREEFGRILSSLDVSRTHEVFVGWTSWADIEPLGVTKASGLESLRQRLGLP ACGTVAVGDGTNDIAMIEWAAFGVAMGGASEEVRAHADHVTAAVDNDGAAAVMHAIMRRC GGAGR >gi|292820789|gb|ACYT02000035.1| GENE 19 16732 - 18009 1871 425 aa, chain - ## HITS:1 COG:Cgl2831 KEGG:ns NR:ns ## COG: Cgl2831 COG0172 # Protein_GI_number: 19554081 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 425 11 430 432 493 61.0 1e-139 MIDVRALRENPEPARASQRARGANPGLVDEIIEADVARREALQAFETLRATQKEVSKSVG RASKEERPAILAQAKELAEQVKAAEAAANAADAEADRLARLLPNLVLDGVPVGGEEDFVV LRHEGPAPRDFAAEGFEPQDHLALGEGLDAIDTKRGAKVSGARFYYLKGIGARLELALMT MAMDQALANGFVPMMTPTLVTPQVMGGTGFLNEHSDEIYYLPADDLYLTGTSEVALAGYH ADEILDLSDGPKRYMGWSTCYRREAGSAGKDTRGIIRVHQFNKAEMFSYCRPEEAAEEHQ RFLAWEEEMLAKVELPYRVIDTAAGDLGTSAARKFDCEAWLPTQERYMEVTSTSNCTTFQ ARRLGIRERREDGMAPVATLNGTLATTRWIVAFLENHQQADGSIYVPEALRPYLGGLEVL SPVAR >gi|292820789|gb|ACYT02000035.1| GENE 20 18264 - 19583 1585 439 aa, chain + ## HITS:1 COG:no KEGG:Jden_0264 NR:ns ## KEGG: Jden_0264 # Name: not_defined # Def: diacylglycerol kinase catalytic region # Organism: J.denitrificans # Pathway: not_defined # 1 431 1 404 406 167 30.0 1e-39 MDATPWVLAAAVGAGAIGAARVATALTRKHRRRKALDIPASVDDPTRGRPRPWIIMNPSK HEDPQAFKDRINRKAKELGVDHMHWRETTREDPGTGQAVRALEEGATIVIAAGGDGTVRA VAAGMAGSGVRMGIIPVGTGNVLAGNLSVPDDPEEALAVALDRNHRAVDLAWVRIEDVTQ ESTQPAEGGLRLAARTALHPEASAADQGAPASSNEPRADEYACLVVAGMGYDGATMADTN PELKKRIGWIAYVWAGLGAMGVPRMKARLTLRSPAARVADPLGVGDQITGEALDEASSAS AEPLRSPADEITRIEARSVMFANAGELKMLVLAPDAELSDGLIDVIAVDALAGLLGWADV TWKMLGQLIGLRPINLPVSTGKVAFRQAKGASVTAEEAQVCQVDGDAIGLAHTMHIRMQA GALDIAVPAERTWMELLPG >gi|292820789|gb|ACYT02000035.1| GENE 21 19669 - 20676 1023 335 aa, chain - ## HITS:1 COG:MT3946 KEGG:ns NR:ns ## COG: MT3946 COG0077 # Protein_GI_number: 15843462 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 15 318 2 305 321 204 45.0 2e-52 MTTNIPGPAPLGDKLRIAFLGPFGTFTEQAVHQVAPAGAILMPMTSAPQALAAVRRGEAD RAVVPIENSIEGGVNATLDSLSHGDPLVIVAEMHVHVVFQLAVLPGTRPEDIRRIGTHPH AWAQCRGWVEETFPGAIHVPATSTAAAAELLSDGDASFDAALCNAVSVNTYGLEALFTDV ADNPGAITRFVLVARPGVVPPPTGADKTTIQVALPVNKSGALLTLLEQFSARGVDLSRIE SRPSGDGLGNYTFSIDIVGHIREERVQAALVGLHRYSPDVRFMGSYPRVDGVRASVAPGT TDEAFRAGRAWVADLLHGGDGMGEAAGNAPSWPLA >gi|292820789|gb|ACYT02000035.1| GENE 22 20849 - 23125 2453 758 aa, chain - ## HITS:1 COG:no KEGG:Xcel_2576 NR:ns ## KEGG: Xcel_2576 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 2 738 29 690 690 154 27.0 1e-35 MLAWWMLLPTLLAMMVALVLPGFMWLRAGGRSSLVAIGAAPAFTFGLITILSVAYPVLDI EWEPSTALPILGMSALGGAGAWSLSFFRRSNDGFSLRGVPLREAIGVRKPIGGRQAAIRA ATWGAILVGFVLAALPLVMGAAPSNPVQQWDPTFHQNGVHAMLYGKNASPFGGLHELYGG RNVYYPTGWHAFVSLFARYDSVIQASNVSSLALMAVWVVGLAALVSVLTASRSAIMAAPI IGGLLLNMPADALTMYNQWPNSTGTALVPGLAAIAIVAGRRLVADLRAGEVLHAFLRRIP QAVFLLIGAIGLVGAHPSAAFSILAFLIAPLLASIASLARRAYGRGGRGQLVALAWGAIA FVVVAAPLLALSSSKIRAMGSYRRDGSNWGEAFSHAFLPYPPFSNTAGNAQWMIVQLILL IIGIAATARLHLLFRRTDPLERAAERAGLTDDAGVEAEEGTLASAQEIEEAEEEAQPLPF WPLASYTILAALTALAYSPDSALRTYLLAPWYKDARRIMGVEDIALTILMAVGVAAIVRL IHAAWTRSLQRILAERGADDNIEAPRWPIQFAVGLLVLVLSGFGAIDARNAAVAQVYDPN RLGKPGMATMGELAMLRRMPYTTAPDALILGDPIAGAAYSEMIGGRKAVFPQLSTANKDV ASQKILIQRFHDIGTDPEVCEVVRRLGITHFYEEEDGAYYNFMRSSRHPGLYNVDTSTGF ELVDAGGTAKLWKITACGEVTPGGGREAFANGVTGSRD >gi|292820789|gb|ACYT02000035.1| GENE 23 23129 - 23794 1096 221 aa, chain - ## HITS:1 COG:MT0380 KEGG:ns NR:ns ## COG: MT0380 COG0586 # Protein_GI_number: 15839750 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Mycobacterium tuberculosis CDC1551 # 31 216 23 211 227 142 43.0 6e-34 MTWSTLVTASDPSMLHTVIEWFKNPETLLVVMGPWVLWGTMLIVLIESGVLFPVLPGESL LFTAGLLHDRLGLHLPTLILLVVVAAFIGAQIGYFLGARWGRRFFKPDARILKTAHLEKA EHYFTNYGGRSLVIGRFIPFVRTFIPIAAGMARYPYPKFLAFNTLGAVVWGAGFILAGSL LGNVPFVHDNLTLILGVIILASVLPVIIEIVGKRRAASDKE >gi|292820789|gb|ACYT02000035.1| GENE 24 23869 - 26883 3363 1004 aa, chain + ## HITS:1 COG:MT0613 KEGG:ns NR:ns ## COG: MT0613 COG0392 # Protein_GI_number: 15839986 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 572 1004 86 522 522 157 28.0 1e-37 MRKRKDSHDGSPVGGTNLLFVPDSSADPLTSGVDTLMGMIDEAGAPPQAPPPPEAPSSEA RTEVMEPVVTPDTTTAPVAMPPSIPPSHADADQGTPASSTNNEGAADPLLPPPAPTADNA AASSEEPTDEAEASAPEATTETDTEATTGDKDADIESAAPPATGEIAANLPVRRMRLPRP VYIADRILPVRRRREDLVDVVISLIAILFIWTIGALASATTRGVTMDVLSFQLVRQILIL PVSITEGLIILTTPILVIVSLALRKRLQAIIQVLVTSLVAAVGGWIIILLTGLLPSDLTA PLSVDRALATQGSQTGIAIAINLVIVTLCALFTSAGEAQSMKAIKWGWTGLWIILILGVL RSSMTLPVAFISVFLGRAFGSGSRWIMGYDDQRAKGAKLVEALLNIGITPSRIVRTDLDT TEEPLATWAVAENSRGRLTQMPADLGDMGVTVTRRPIQDHHRHYQAWSDTGLAYEIIAMD PGQELTGTLLEMWNNLRLRGISRWVSPSLKAQAERSSFTTLQALRAGVFTQEPIGIASAS DSIILVMSALPPTTPLTELGENASDEILERAWEQLHFAHSRGISHRALTPEAVVVDSSSD VWLLDWDSGEVATTELNQSIDIAQMLVLTALAVGPERALEAGRRCVGEDTLIACAPVIQK PVLPAEINQRLRRSDLLGELRAALVGDSEAETAHTADLQRFRPRTIFTIAVAFIAVFIVV SSLNFSDIVTTVKSANLWWMLASALLACLIWVGSAVPLVALSPEKLSLRETLVAQVAASI ITIVAPAGVGPAALNLRYLRKRRVPTAMAVTTVTLMQISQALITIILLLLVMVIAGSSLS VSVPYGTILGVVAVVMVAVGIIVAVPKVRRWIWSKIQPTWQQVYPRLLWIIGQPRRLAAV VGGNLLMNIGYVGSFWTALLAMGGSLNFSTVSITYLTANAAGSFIPSPGGIGTVETALTS GLTVAGISSSVAIATALLYRLVTFYGRIPFGWLAMKYMEKKDLI >gi|292820789|gb|ACYT02000035.1| GENE 25 26949 - 27413 446 154 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190711|ref|ZP_06608965.1| ## NR: gi|293190711|ref|ZP_06608965.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 154 11 164 164 224 100.0 1e-57 MKKPAVFLAGVGTCALAVASCSTATSPTPASQSGPPEDSAQSAPGATASPTIDPDTALTS KNGQSGPSAQSGQEADSSVVIIVQLVEGTDGETTLASINEAVASAFPGGYVSVEREYRNA LKGYALRAPAGSIDVIRAVSGVQAAYPDGNNLLQ >gi|292820789|gb|ACYT02000035.1| GENE 26 27720 - 31541 4279 1273 aa, chain - ## HITS:1 COG:SPy0416 KEGG:ns NR:ns ## COG: SPy0416 COG1404 # Protein_GI_number: 15674549 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 253 997 266 1031 1647 221 27.0 7e-57 MTMKKTTAFLAFAGACALAVTGPATLAAPPSPADAHPATGATASSLPVGDVDTALTSKSG QTSQPDQVTPTAEQDASAIVGIIVQLHEGSDRAASLASINEAVASAFPGESAQVQREYDK ALEGFALSAPAGSLDAIRAASGVKGAFLERETRVSDVDEVDAEGGSQAPRLSTQHPDNLS AQIMMRADQLTQKGEGKVVAVIDTGVEMTHPAFSGAMPSTPALTADKVGALTPQLGEGKQ GVYVSEKFPFAYDYADGDNDAMPAKGSYGSHGTHVAGITAGNSDQIVGVAPEAQIIVAKV SRSSDGEIPDSALLASLDDMVVLHPDVVNLSLGQLGGMDNEADSVYASVFKKLQDEGVSV NAAAGNHYSAGYGNTSGRNLPYASDPDSSTQCEPATYSSVLAVASVDNLLSYNAFSAAGK DIAYQRARGANGEKVAEIAELAAGSYEYVDAGFATEEDAAALTAKYPGGLAGKFALVSRG KLTFQKKIENLAALKPAGILVYNNVAGDSLMLMSITTLDVPAAFISQENGQAMLAAADRH LTLVDGKTITPNSNYSMSDFSSWGVTPDLRLKPEVSAPGGSIYSAVLDGNYDHLSGTSMA TPQMAGVSAVVLQRVQSDPLFASMSAREKVDVVQNLIMGTARPIADAAQENGVFYSPRKQ GSGIVDALAATTSSVYPTVVGAPEQSRPKADLGDGTTGWHFDVTLHNLGAAPATYELSSQ ALSEDVDGGYFTGSSTDWRGRGVEIRYSGAATAAAEGATVTVPAGGQATIGVDVTPGDQF AAFATANTPNGTFLDGFVRFASKTESQPDLTVPYLGFYGNWGKAPIFDALASEGGAHTLP SGIYNGASGNILGYNPFTKTSDLTGLPKADRYVISRSEASGAPTVLEPRTGTLRSVHTLN AAYTNAAGEKVASFTRYQNWKSGISPSTGRMTWVEEGHEPTSLDLRSDAFKGLPDGAYKL TLSAHNDGPSQVEQSISYDFRIDTVAPVVSNVTYTGEGQDMVVSFDVSDSSPLAGIDVHD PADGLWFYRYVFSDREGSLGADGTYTYHVEVPFKDIDAAWGYQGGSGSVIAHPYLLAWDY GLNHSEAATLDLPSDNPGTSEACASTEGGNWVKDGAGWWYACAGGKDYLKGGWFTINGSD YLFGPSGYMATGFLKRVDGQWVYANESGALVGGWVRDGGSWYYLDPATKVMKTGWVADGG SWYYLTGSGAMASGWVNDGGSWYYLNASGKMATGWLNVGGSWYYLSPSGAMLTGTQVING RTYVFDANGVWVR >gi|292820789|gb|ACYT02000035.1| GENE 27 31774 - 35598 5240 1274 aa, chain - ## HITS:1 COG:SPy0416 KEGG:ns NR:ns ## COG: SPy0416 COG1404 # Protein_GI_number: 15674549 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 270 822 278 820 1647 230 32.0 1e-59 MTTKKPATLLALAGTAALVVAGPAALASPPTPADTRPDAGATASSLPVGDVDTALTSKSG ETTQTEQAPTTDEVDPAAVVTIVVQLDDGVDRTASLASINEAVAGAFPGSSTQVEREYDK ALQGFALSAPAGSLDAIRAVNGVKAAFLDRDTHVDGVDDQVAGEGATNSSRIATQDPANL SAQLMIHADQITQKGDGKVVAVIDTGVDMTHPAFAGALHGTPGLSEDKVEALTPQLGDGK TGSYVSEKFPFAYDYADNDPDASPTGEAGSHGTHVAGITAGNAGEIVGIAPDAQIIVAKV ARSSNGGIPDSALLAALDDMVILHPDVVNLSLGQTGGMDNEADSMYATVFKSLQDAGVTV NAAAGNEYTAGYGNLSGKNLPFASDPDSSVLCEPASYSSVVSVASVDNSLAHSAFTVGDR DIAYQRAGGADGQKMPDLSDLTGGPFEYVDGGIGSPEDGEALKAKYPEGLAGKIVLVKRG SLTFQDKFNNIAGSKPAGFIVYNNVPGDSLVVMSLATDGVPAAFISQADGEAMLAAADHH LSVAPGKVVPPSSKYSMSSFSSWGVTPDLRLKPEVSAPGGNIYSAVPGGTYEFMSGTSMA TPQMAGVSAVVLQRVQNDPLFASMSAREKVDVVQNLIMSTAAPIVDPLQDTGAPYSPRKQ GSGLANVLAATTSSVYPIVVGAPEQSRPKADLGDGTKGWHFDVTLHNLSGAEATYELSSQ ALSEIVEGGFFTGHSADWRGKGVDIAYSGAAVSGTDEGAIITVPANGEATVGVDVKPGAD FDASVAQNTPNGTFLDGFVRFTSKTASQPDLTVPYLGFYGNWGKAPIFDALASEGGAHTL ASWVYNGTTGQQLGYNPLVKDADRIGLPTSSKNVISRSDASGAPTVLQPRTGTLRSVHTL NAAYTNAAGETVATFTRFMNWKSALDSSTGKMTWVEQGHDPMSLDARADAYKNLPDGAYK LTLSAHNDGPSQADQSISYEFRLDTAAPVVSNLEYKGEGADTVLSFDITDASLLAAIDLH DPADGLWFYRHIFTDNEATTAADGTRAYHVEIPFKDIAQAWTDQGGSGEVIAHPYLLAWD YGLNHSEALTLNLPSDNTGTADACASTEGGHWTKDAAGWFYTCADGTSYLKGGWYTINGS DYLFGPSGYMATGFLKRADGQWVYANESGALVGGWVRDGGSWYYLDPTTKVMATGWVADG GSWYYLTSSGAMAIGWVNDGGSWYYLSGSGAMATGWIKVGGLWYYLGPDGAMLTGTQVIN GRTYVFDGSGVWVG >gi|292820789|gb|ACYT02000035.1| GENE 28 35830 - 39648 3988 1272 aa, chain - ## HITS:1 COG:SPy2010 KEGG:ns NR:ns ## COG: SPy2010 COG1404 # Protein_GI_number: 15675796 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Streptococcus pyogenes M1 GAS # 182 916 114 816 1181 218 27.0 8e-56 MSTKKPAALLAFVGACALAVTGPATLASPVSPGSSGVSDGAAALPTGDIDTALTSKSGQS APSSTDTEADPARVVGVIVQLEDSASREGTISEINEAVASLFPGASAQVEREYDNVMSGF SLKAPAGALDAIRRAPGVRAAFLEREGRVSDVATPDAEGGIESSQTGGQDPANLSAHLMM HIDQVAQKGEGKVIAVIDTGVDMTHPAFTGELAGTPPLTPQKVAAMTSQLGEGKTGVYVS QKFPFAYDHADGDNDASPAKTPNGSHGTHVAGIAAGNADKIVGTAPNTQVIVAKVTRSED DALLDSALLASLDDMLVLHPDVINLSLGWTAGMDNEADSVYATVYKKLQEAGITVNAASG NAFSTGYGNNSGKGLPYASDPDSSVMDEPATYSSVVAVASVENALLRNAFTVNGKDIGYQ RARGLNGEKVAFFSDLPAGTYEYVDAGFASEEDAAALKAKYPDGLAGKIALVSRGNMTYQ KKVENLYDLKPAGIVVYNNVSVGSLIAMNLTTQDMPAAFISQADGQAMLDAPEHKLSIAE GQVLPQSTVYEASEFSAWGVSPDLRLKPEIAAPGGEVFSSIPDGAYEQSSGTSMATPQMA GVSTIVLQRVQSDPLFASMSAREKVDVVQNLMMGTARPLTDAAQTSGALYSPRKQGAGLV DALAATTSSVYPTVVGAPEQSRPKADLGDGTKGWHFDVTLHNLSGVSATYELSSQALSEI VEGGFFTEHSADWRGRGVEIAYSGAASASAEGATVTVPASGEVSVGIDVTPGAEFASYVA DNTPNGTFLDGFVRFASKTEGQPDLSVPYLGFYGDWGKAPIFDALASDGGAHTRASAIVN GKTGESLGYNPLVKAADRTGNPNPQRYVISRSTASGASTILEPRTGTLRSVHSLTSTYTN EAGETVFSVTNHQNWKSVYLTSTEENTWVEAYHESTAFDAKAEKFAHMPDGAYTLRIAAS NDGPSRAEQSISYQFRLDTTAPFISELSYRQKDEDFVVTFDVADDSPLAAVDLHDPADGL WFYRHVFTESEGSVGPDGRYMYHVEIPLSVIEQAWADQGGTGDVIANPYVLAWDYGLNPS EVFPIDLPSGNLGTASACTDIAGGRWMQDSVGWWYQCANGRDYLSGGWFTINGRDYQFGP AGYMSTGFVKRDNVGWMYMDSEGTPVSGWVLDSVYGGPYWYYLDPETKVMRTGWLADGGS WYYLTGSGAMAVGWVNDGGTWYYLSASGKMATGWVNDGGTWYYLSPSGAMLTGTHVINGR TYVFDDLGAWVR >gi|292820789|gb|ACYT02000035.1| GENE 29 39870 - 40220 498 116 aa, chain - ## HITS:1 COG:no KEGG:SPCG_1257 NR:ns ## KEGG: SPCG_1257 # Name: not_defined # Def: pneumococcal surface protein A # Organism: S.pneumoniae_CGSP14 # Pathway: not_defined # 55 112 40 97 406 67 48.0 2e-10 MLPEKFKDATLPDGTVTTAATIAVVKSVKQDANAPAPWVEPQPAPDPQPAPAPMGAWVMD SVGWWYRNADGSYPTNTSMVIDGRTYRFDGRGYMRTGWVLVDGTWYYLHGSGVWVI >gi|292820789|gb|ACYT02000035.1| GENE 30 40102 - 40749 414 215 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190718|ref|ZP_06608972.1| ## NR: gi|293190718|ref|ZP_06608972.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 215 1 215 215 421 100.0 1e-116 MARTNQHWSGHVIHISQGVDRSPGSNLSPDAILYRRVVDFPGNVTADGKHHHTFTITLSD IQAAWSKDGHTDALPATVKLVAWGSDGLPENANMTKVNWSGDDIDVLNVDEKSGLVTAQK EGCSDVRAVADYTDPTVFDPVMASVQVCVSELDKDEIAVNHLCVDLEEGETVTLQAVASR EVQGCHPARWNCHNGGDNRRCEVCEAGCECACSVG >gi|292820789|gb|ACYT02000035.1| GENE 31 40912 - 41025 90 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNIHFATKVHMFADNPLKRLKFWMIQNSVDTVTIIAN >gi|292820789|gb|ACYT02000035.1| GENE 32 41089 - 42810 1953 573 aa, chain - ## HITS:1 COG:Cgl2849 KEGG:ns NR:ns ## COG: Cgl2849 COG4425 # Protein_GI_number: 19554099 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 1 528 57 569 592 275 34.0 2e-73 MAVSFLGVIAALAMYAVSVAPSLMARSWAWHAVASGVLVSCGYIAGVVIQNVGARVIAMT GLTIRASEPVEIGFRVCVAALFAIWWLYAVIQSHRRARVAARLVNMPGETFGEYLLGTAG TVVIAWCLIAIVAGLNRLGRMLIGVLGGYMPRPAAIVVGVAILAAIVFFLTSNVILRGGI GFFRHHAEQMNTRTARGIYKPFVPERSASPASPVTWESVGGQGRVFLGRGPSRLDIAQVT GGEAMEPIRVYSGMPAGGAGIEQAAATVVAELRRTGAFDRAVILIAASTGSGWVDEWQVQ PLEFLTRGNCATASLQYSYVPSALNWLTGLEPAQEASAVLFRAVRAELDAMDEADRPALF VCGESLGAFASQSVFSSVEEALSQVDGALWVGTPAFTPMHAELTSARHKGSPEVAPVVYN GRRVRFVNEPSDLRTDLYGRELGPWGFPRIVYAQHASDPVVWWNRKLLWTQPDWLRERAG RDVSPFVEFTRFVTFIQVLADLPVAGTAPGSHGHTYNEELIPLWRAILGFDLLFDEAPTH PRLAALDGEWVDEEMVERIGIVVRANLELSDRQ >gi|292820789|gb|ACYT02000035.1| GENE 33 43070 - 43582 525 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190720|ref|ZP_06608974.1| ## NR: gi|293190720|ref|ZP_06608974.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 170 1 170 170 324 100.0 2e-87 MTDNYSDQTRALLNLLNKLPAKPQITFRGYVDRAVDRVRVVGSPTLTATTHSLEIATNNL ARPEVAIVVGANGRDLTPILQGAPNFNLQEVTYLPNSYFLQHVAHEYNGVTIQVYEEIVL NSQSAGFTITHPLHTWDPVLAVLDPALRAARERPLPMPEGSSDRFLEPIH >gi|292820789|gb|ACYT02000035.1| GENE 34 43611 - 44372 677 253 aa, chain - ## HITS:1 COG:Cgl1397 KEGG:ns NR:ns ## COG: Cgl1397 COG0500 # Protein_GI_number: 19552647 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Corynebacterium glutamicum # 10 244 33 251 271 155 38.0 1e-37 MSASLDVNPFVGEGGAYDSVRPAYPDEAVAALIDAAQRARRENMPGRGGPLRAADIGAGT GKMSELLARGGLLVDAVEPSKAMRTQASSIEGVTWHGGVAEDIGLPNGVYDIVVFAQSWH WMDPERAGLEAARILAPGGALAIVWNQMAVSIPWVHRLTRIMRSGDVHRPDRPPMPGGGF APMTLTQVAWEDRMTPEEILTLGTTRSSYIRSSEAGRARMQENLRWYLYEHLGYAPGELV TIPYATLVWLTHL >gi|292820789|gb|ACYT02000035.1| GENE 35 44462 - 45985 1916 507 aa, chain - ## HITS:1 COG:Cgl2685 KEGG:ns NR:ns ## COG: Cgl2685 COG1502 # Protein_GI_number: 19553935 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Corynebacterium glutamicum # 7 506 4 499 500 391 42.0 1e-108 MLPPHPELPLWAWLLFGAFEFAIRIIALGIVPKHRRASTSTAWLLLIFLWPLLGVPLYVI FGSWWAMGRRLDDDPEARQLVDAIVAGSTAPDPENYEVPDWPDGLPAGSDDDTASIMRLS GTLSGFPASVGRVGRLYNDTAETFRAMAASIDAATHHVNALYYQTSWDEYTAPFYEALER AVARGVTVRLLVDHHGMRTIPGHKDFRRRLNAMGIEWHEMLPFAPLRGQIRRPDLRNHRK ILVIDGREAYVGSHNLVAPDYDTPSYAKSGMLYDDTSVSVTGPIVAQIQAVFAVDWYYAC KEILTPEVLTPPAAQLAAKNEDTHISAMQIIPSGPAFKGEPNLRAFVHMISLARTHVSIT SPYFIPDEALMTALMNAALSGVEVELFVSEQFDQFLVGHAQRSYYGPLLKAGVRIHLYRK PRMLHSKYMIVDGSLCFIGSSNMDVRSFGLNYEIVLVADSSRLVEMLHGNDERTRQQSRE LTYEEWRGLPWHVHYIDNVCRLGSSLL >gi|292820789|gb|ACYT02000035.1| GENE 36 45990 - 46583 420 197 aa, chain - ## HITS:1 COG:Cgl1057 KEGG:ns NR:ns ## COG: Cgl1057 COG0563 # Protein_GI_number: 19552307 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Corynebacterium glutamicum # 60 191 4 139 177 78 41.0 9e-15 MRGPTWEDVSGGVGLRVTVPVTMGPDEAARELAPRLSALAGERAPASSGEAGARPGVPVV TIDGYSGSGKSTLAAALARLVNGWQVLHLDDWYPGWDGLAEGAHIARRIAADLRGGRASS YEAWDWENGRTGATISVPLAPTIIEGCGAIDAEADLSVWIADPGEDERRSRALARDGQTY APHWQRWADQDLGRSLP >gi|292820789|gb|ACYT02000035.1| GENE 37 46580 - 47443 903 287 aa, chain - ## HITS:1 COG:Cgl1056 KEGG:ns NR:ns ## COG: Cgl1056 COG0619 # Protein_GI_number: 19552306 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Corynebacterium glutamicum # 39 286 3 250 251 213 50.0 5e-55 DLGQVGTRGAAPEDSTDEAGSAPAGNVHDRGPKRGARGLLVRTNPVARVLALLVATTPLL ITIDPVSAAVAVILELALMPLSGVSARSFFLKATPLLLAAPLGALSMLLYASPGGTVYWQ FGPAAVSDHSMWLALGIGLRMCAIVLPAIALLDRIDPTDMGDGLAQILHLPARPVLAALA GARMTSLMAADWKALERARRARGVGDSSRIRSFLRGSFSLLVFALRRSGKLATTMEARGF GAEGKRTWARPSRLRAADAVLMVVAIALPAIALAASIWAGTFAPVGR Prediction of potential genes in microbial genomes Time: Tue May 17 06:40:12 2011 Seq name: gi|292820780|gb|ACYT02000036.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.13, whole genome shotgun sequence Length of sequence - 6057 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 1 - 1498 1750 ## COG1122 ABC-type cobalt transport system, ATPase component 2 1 Op 2 . - CDS 1509 - 2108 958 ## COG4721 Predicted membrane protein 3 2 Tu 1 . - CDS 2269 - 3738 1994 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 3787 - 3846 2.0 4 3 Tu 1 . + CDS 3899 - 4396 576 ## CE1146 hypothetical protein 5 4 Tu 1 . + CDS 4531 - 4770 110 ## - Term 5011 - 5047 6.7 6 5 Tu 1 . - CDS 5063 - 5527 657 ## Gbro_0247 hypothetical protein - Term 5633 - 5669 3.6 7 6 Tu 1 . - CDS 5780 - 6055 284 ## gi|293190758|ref|ZP_06608986.1| hemerythrin HHE cation binding protein Predicted protein(s) >gi|292820780|gb|ACYT02000036.1| GENE 1 1 - 1498 1750 499 aa, chain - ## HITS:1 COG:Cgl1055 KEGG:ns NR:ns ## COG: Cgl1055 COG1122 # Protein_GI_number: 19552305 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Corynebacterium glutamicum # 24 499 6 433 446 371 49.0 1e-102 MDEAHSASSRPASSPDGQVPLGEGARVCARGWGWRHAGRKNAVLSGVDLDIAPGERVLVL GPSGSGKSTLMGGLAGLLGGAEEGDATGTLTVDGVAPAEARGRVGLLMQDPEAQVVLARV GDDVAFGMENLGVAREEIWPRVENSLEAVGLSVPLDHSTTELSGGQKQRLALASILAMGP GLLLLDEPTANLDPSGVAEVRAAVETVVERTGATVVVVEHRVDVWASLVDRVIVVADGAI AADGPLDEVLAQQGDALRERGIWLPGDDVAAEVGPAPKVPPASSESPEGGARGTTPITRV TDLTIGYDASAPVRSGIDLTIERGVSTCIVGANGAGKSTFALTLAGLLPPLAGTVEVETA DGTDGDPHEWSSKQLLGRMSMVFQEPEYQFLAATVAEELAIGPRAAGMTDEEIAPLIDEH LEALGLTKLARANPMTLSGGEKRRLSVATALISAPELLILDEPTFGQDRGTWLGLVRLLR AALERGVTLVSITHDPAFV >gi|292820780|gb|ACYT02000036.1| GENE 2 1509 - 2108 958 199 aa, chain - ## HITS:1 COG:Cgl1054 KEGG:ns NR:ns ## COG: Cgl1054 COG4721 # Protein_GI_number: 19552304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 3 193 9 199 201 165 56.0 5e-41 MASTAPSLRWRVIDIVTAAVLGVACGLIFVVWNQVGGASYEFLKTIGPGVGGLVTGVWLL GGTLGGYVIRKPGAALFVELMAATVSMALGSQWAVETIYSGLAQGLGAEVVFALVAYRRF NATIVGAAGAVSFAFEWVLELFLSGHLAKGVLYNVIYLVCGMASGIVLAGLLAWALTNAL AKTGALDRFASGRGARELV >gi|292820780|gb|ACYT02000036.1| GENE 3 2269 - 3738 1994 489 aa, chain - ## HITS:1 COG:ECs5186 KEGG:ns NR:ns ## COG: ECs5186 COG1113 # Protein_GI_number: 15834440 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 16 460 17 462 470 497 57.0 1e-140 MTVEHVEHGKPQQGGEKLQRTLKNRHIQLIAIGGAIGTGLFMGSGKTISVAGPSILLVYM IIGAVLFLFMRTLGELLLSDHKYATFADIARDLIGPWAGFVTGWTYWACWVVTGVADMIA ITGYTHFWWPDLPAWIPIGATTLLLFALNAMTVKAFGETEFWFALVKIVAIIALVIVGFA MVAMGTVDEEGTVAAVSNLWSHGGFFPTGFTGFLGGFQIALFAFIGIEMVGTTVAETDDP DNTLPKAVNSIPVRIMLFYVAALAAIMMVTPWDQVSPEKSPFVTMFSLTGLGAAATIVNL VVLSSAASSANSGIYSTSRMLYGLARQEQAPGVFARLSSHHVPLNALFLSCVCLLSGIVI MGMGGSISAAFTLVTSVSATLFMGVWVVIVVSYLVYLRKRPQLHAALKFKAPGGAISAWI VLAFMGCMGVILAMWDDTRPGLVYSLIWIAFIVGAAFANRHFLLRRASRGVLGDGGTGEG PHTGPHLHE >gi|292820780|gb|ACYT02000036.1| GENE 4 3899 - 4396 576 165 aa, chain + ## HITS:1 COG:no KEGG:CE1146 NR:ns ## KEGG: CE1146 # Name: not_defined # Def: hypothetical protein # Organism: C.efficiens # Pathway: not_defined # 16 125 5 124 125 86 40.0 4e-16 MTQNSTRSTGETSYPLISVATVPTERAARYGKQLVSHMGHKITGSWDEEAGSGYLLFDRE GPVLGRFDVIASASDLRLELRTEPERADRLEFIVGIHLARFGARDSLAISWERTDGSEGS TQGPLTPEEVEAHARAKKAAREAEREAAEREATDHVATEREASER >gi|292820780|gb|ACYT02000036.1| GENE 5 4531 - 4770 110 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAQRFGVTSSTMVRPTTPTPGTAPLTGRYTSYGTLHPIRTGALPTDRVQRPRPQAQPRRA PGSPQPMPRHCSHIHQFRT >gi|292820780|gb|ACYT02000036.1| GENE 6 5063 - 5527 657 154 aa, chain - ## HITS:1 COG:no KEGG:Gbro_0247 NR:ns ## KEGG: Gbro_0247 # Name: not_defined # Def: hypothetical protein # Organism: G.bronchialis # Pathway: not_defined # 10 151 5 143 150 79 37.0 4e-14 MTSDADVEDDLDRVETDVVVDCDIEAAWALVSEPGWWVNDGPLGDHEVTLGDDGIYRVSD PDAGDWLIEKADEDPTDVVAFRWYPLADDELPDEYATRIEISLSEERGGVAIHVEESGLA SVSDDEAEARQAYEDEVGMWEQVLSAAKNYLEGR >gi|292820780|gb|ACYT02000036.1| GENE 7 5780 - 6055 284 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190758|ref|ZP_06608986.1| ## NR: gi|293190758|ref|ZP_06608986.1| hemerythrin HHE cation binding protein [Actinomyces odontolyticus F0309] # 1 91 1 91 91 171 100.0 2e-41 PSAGNVHAGGAGVIHRPGADELVIHSIPRVVRHAVLFAAVDNLPVGENIQICAPHQPEPL FAHLQDSEQHYRVETLEVGPVDWRYRITRLA Prediction of potential genes in microbial genomes Time: Tue May 17 06:40:30 2011 Seq name: gi|292820772|gb|ACYT02000037.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.14, whole genome shotgun sequence Length of sequence - 4582 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 176 189 ## 2 1 Op 2 . - CDS 259 - 714 717 ## COG0251 Putative translation initiation inhibitor, yjgF family 3 2 Op 1 . - CDS 909 - 2819 2655 ## Dalk_4101 hypothetical protein 4 2 Op 2 . - CDS 2917 - 3738 1080 ## RMDY18_02850 catalase 5 2 Op 3 . - CDS 3805 - 4347 811 ## Amir_3220 hypothetical protein Predicted protein(s) >gi|292820772|gb|ACYT02000037.1| GENE 1 2 - 176 189 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDRQMFKLVDANTVPSEGGGCGCGCGGEGKKARAEQAPEQAPAEHAGCGCGGHEAAE >gi|292820772|gb|ACYT02000037.1| GENE 2 259 - 714 717 151 aa, chain - ## HITS:1 COG:MT3779 KEGG:ns NR:ns ## COG: MT3779 COG0251 # Protein_GI_number: 15843295 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Mycobacterium tuberculosis CDC1551 # 1 145 1 145 151 115 53.0 4e-26 MLPSEKLAELGLELPAVATPVAAYVPAVIDRGVVRTSGQIPVVNGEPVCIGAVGEDGADP EDAKDAARVCALNALAAAASVAGGIDNLAGVVKVVGFVSSRPDFYGQAGVINGASELFGE IFGSQHARSAVGVAALPLNVSVEVEAEFLIK >gi|292820772|gb|ACYT02000037.1| GENE 3 909 - 2819 2655 636 aa, chain - ## HITS:1 COG:no KEGG:Dalk_4101 NR:ns ## KEGG: Dalk_4101 # Name: not_defined # Def: hypothetical protein # Organism: D.alkenivorans # Pathway: not_defined # 88 605 241 739 755 233 34.0 2e-59 MKALQKIWTPARTIGAIALVGTLALGACSASGTASSSSATTTATAAVAASGTNGDTTAPP TAADALASNAKASHVKDSDWKASDAVDVTLSGATATSSSDAVSVSDGVLTISKAGVYKLS GSFTGKVVVAAGSEDQVVLILDNATITSSTGTAIEATSGDDLVLSLEGTSTITDGTYTGT EDANAAIYADMDLTVTGSGTLNVTSGASDAITSKDDLYVLSGTINATASDDGLRGKDSLT IAGGTVTVNSGGDALKSDQDNDDTKGYVSIVDGTVTLTSGGDGIDAYTDAIVTGGTLSIT SGGGASAGKPSTGSTKGIKAQTYIIVDGGTTTIDAGDDAIHSNGALRLSSGTITAASGDD GVHTEVAAVLDGATVTVTQSNEALEGGLITISDGTVDLTSSDDGINASGSITVEAGLAAV AESSSDTTTTTTTTQQMGPGGMADGGGSMEDTGEQLNITGGTVTVNANGDGLDSNGSLTI SGGTTTVYGPASGANGALDSNGAMSITGGTVIAFATNEMVETPTTTDGQGWISAAASGSA GATVTITDSSGSVLGTYTSPKAFGNVIYSTSGMTNGSTYTVSVDGTSTEATAGQGGGMGG PMGPGGPGQGGQPPAGGQPPAGGPGQGGQPPAAPQG >gi|292820772|gb|ACYT02000037.1| GENE 4 2917 - 3738 1080 273 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_02850 NR:ns ## KEGG: RMDY18_02850 # Name: not_defined # Def: catalase # Organism: R.mucilaginosa # Pathway: not_defined # 2 255 3 276 306 195 43.0 2e-48 MNATLNSILADLDSIGLDELNKRAAMLTRVDRKYALDAATASAILSRLPEDVLVLNIDGQ VSQGYASTYYDTPDMDSYLLTALKRRRRFKVRTRSYLSSKASFLEVKTRGPRGVTVKKRM PISWDEAGAPLAGERRQWVTGKVEKTGYGHLVPALEPVLAGSYERNTLLLPGGVGRATVD TNLLWRSLRTDGTEVARPDLVIIETKSGATPSVVDHLLWEGGVRPVKISKYGTAMAAMHR LPANKWHRTLDRYFHEYVEVPELAHDAPLAMAA >gi|292820772|gb|ACYT02000037.1| GENE 5 3805 - 4347 811 180 aa, chain - ## HITS:1 COG:no KEGG:Amir_3220 NR:ns ## KEGG: Amir_3220 # Name: not_defined # Def: hypothetical protein # Organism: A.mirum # Pathway: not_defined # 1 179 1 181 206 152 55.0 8e-36 MTALILIAIDLVAMAALVFGLYFPRHRRADLVAAFLGVNVGVLAVTIILANSTVSAGLGL GLFGVLSIIRLRSDQISQTEIAYYFASLALGLLTGMSSAVTPLLGGLIALILVALAFGDS KLIFGRYTSQTVQLDRAIADPAELKAALEQRLGASVASVSVVKLDLVNDLTLVDVRSKVA Prediction of potential genes in microbial genomes Time: Tue May 17 06:41:08 2011 Seq name: gi|292820730|gb|ACYT02000038.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.15, whole genome shotgun sequence Length of sequence - 40876 bp Number of predicted genes - 39, with homology - 33 Number of transcription units - 20, operones - 7 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 414 - 836 210 ## 2 2 Op 1 . + CDS 957 - 1748 738 ## gi|293190832|ref|ZP_06608994.1| hypothetical protein HMPREF0970_01327 3 2 Op 2 . + CDS 1745 - 1894 335 ## gi|154508182|ref|ZP_02043824.1| hypothetical protein ACTODO_00676 + Term 2028 - 2065 1.0 - Term 1638 - 1677 0.1 4 3 Tu 1 . - CDS 1914 - 3236 801 ## COG1940 Transcriptional regulator/sugar kinase - Prom 3339 - 3398 2.1 + Prom 3273 - 3332 3.5 5 4 Op 1 11/0.000 + CDS 3504 - 4679 1750 ## COG2115 Xylose isomerase 6 4 Op 2 . + CDS 4706 - 6076 914 ## COG1070 Sugar (pentulose and hexulose) kinases 7 4 Op 3 2/0.333 + CDS 6069 - 7250 831 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 8 4 Op 4 . + CDS 7299 - 8756 2140 ## COG1757 Na+/H+ antiporter + Term 8772 - 8813 14.1 9 5 Tu 1 . - CDS 8633 - 8929 161 ## 10 6 Op 1 . + CDS 9023 - 10330 1032 ## EF2349 hypothetical protein 11 6 Op 2 . + CDS 10327 - 12330 375 ## COG0433 Predicted ATPase - Term 12410 - 12465 17.2 12 7 Op 1 10/0.000 - CDS 12481 - 13173 651 ## COG2376 Dihydroxyacetone kinase 13 7 Op 2 . - CDS 13176 - 14177 1268 ## COG2376 Dihydroxyacetone kinase 14 7 Op 3 11/0.000 - CDS 14180 - 15268 1357 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 15 7 Op 4 21/0.000 - CDS 15274 - 16344 1051 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 16 7 Op 5 16/0.000 - CDS 16341 - 17885 165 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 17 7 Op 6 . - CDS 17977 - 19197 1593 ## COG1879 ABC-type sugar transport system, periplasmic component 18 8 Tu 1 . + CDS 19418 - 20167 855 ## COG1349 Transcriptional regulators of sugar metabolism 19 9 Op 1 . + CDS 20280 - 20933 400 ## gi|293190849|ref|ZP_06609011.1| conserved hypothetical protein 20 9 Op 2 4/0.000 + CDS 20984 - 22855 744 ## COG2189 Adenine specific DNA methylase Mod 21 9 Op 3 . + CDS 22871 - 25837 2510 ## COG3587 Restriction endonuclease 22 9 Op 4 . + CDS 25843 - 28710 2128 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 23 9 Op 5 . + CDS 28778 - 29161 441 ## VC0395_0570 hypothetical protein 24 9 Op 6 . + CDS 29221 - 29625 148 ## SCAB_50681 hypothetical protein 25 9 Op 7 . + CDS 29626 - 29928 201 ## gi|293190855|ref|ZP_06609017.1| putative glutamine amidotransferase, class I + Term 29994 - 30051 3.0 26 10 Tu 1 . - CDS 29885 - 30118 136 ## 27 11 Tu 1 . + CDS 30075 - 30194 86 ## 28 12 Tu 1 . - CDS 30287 - 31273 912 ## gi|293190857|ref|ZP_06609019.1| hypothetical protein HMPREF0970_01352 - Prom 31403 - 31462 3.3 29 13 Tu 1 . - CDS 31494 - 31733 159 ## EUBREC_1159 hypothetical protein 30 14 Tu 1 . - CDS 32103 - 32318 66 ## 31 15 Tu 1 . - CDS 32426 - 33070 427 ## gi|293190860|ref|ZP_06609022.1| hypothetical protein HMPREF0970_01355 32 16 Tu 1 . - CDS 33515 - 34207 374 ## EUBREC_1159 hypothetical protein - Prom 34374 - 34433 2.6 33 17 Tu 1 . + CDS 34115 - 34381 226 ## + Term 34542 - 34572 -0.5 34 18 Op 1 . + CDS 34665 - 35465 345 ## gi|293190865|ref|ZP_06609027.1| hypothetical protein HMPREF0970_01360 35 18 Op 2 . + CDS 35452 - 36366 865 ## gi|293190866|ref|ZP_06609028.1| conserved hypothetical protein 36 18 Op 3 . + CDS 36381 - 37076 450 ## gi|293190867|ref|ZP_06609029.1| conserved hypothetical protein 37 19 Tu 1 . - CDS 37747 - 38913 624 ## COG1404 Subtilisin-like serine proteases - Prom 38995 - 39054 2.4 - Term 39062 - 39113 1.7 38 20 Op 1 42/0.000 - CDS 39135 - 40049 1024 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 39 20 Op 2 . - CDS 40046 - 40765 255 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 Predicted protein(s) >gi|292820730|gb|ACYT02000038.1| GENE 1 414 - 836 210 140 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRRYQECDGGSKHERLSALLRISSPDSMSDETGDAFAGARRGVHETRDTFAGGKWTEFG CFVRAEVSSVSNVCAKELAEVSVVSSRGSDPPALVSSVSGEVVGGCCEAAVTLSGAKKLA QQEWILEQTAKKFALRVKIG >gi|292820730|gb|ACYT02000038.1| GENE 2 957 - 1748 738 263 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190832|ref|ZP_06608994.1| ## NR: gi|293190832|ref|ZP_06608994.1| hypothetical protein HMPREF0970_01327 [Actinomyces odontolyticus F0309] # 1 263 1 263 263 522 100.0 1e-147 MDLAARGFWKLTAIAIVVNAALAVGAYGISSFTHTDGIPLIFIWFPLYLAAALPHLVEQS VRPFWSSRPHYEDGSIVIPGNHQSIALVTTGFLLYAFAGWTMAAGFTTGQPFHAALYVFA AASMAYLECTRNPGKDLVIALTDKQKTTLTPEGISFHFPELLSVEEDSNDRDITILWTDN VTIDDIIHPTMFLEADPDTYGGPWSMSSERIGIPFTGLDALMRHFNEHPKDRPLLATPDG VDLVNDILAEAHMELATTQRSHA >gi|292820730|gb|ACYT02000038.1| GENE 3 1745 - 1894 335 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508182|ref|ZP_02043824.1| ## NR: gi|154508182|ref|ZP_02043824.1| hypothetical protein ACTODO_00676 [Actinomyces odontolyticus ATCC 17982] # 1 49 1 49 49 74 100.0 2e-12 MSTKKRILVTLIVAVLAAIVIFPMLPLEYRDRVVAVLTHPLYYLGLGNW >gi|292820730|gb|ACYT02000038.1| GENE 4 1914 - 3236 801 440 aa, chain - ## HITS:1 COG:BS_xylR KEGG:ns NR:ns ## COG: BS_xylR COG1940 # Protein_GI_number: 16078822 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus subtilis # 69 415 2 326 350 122 27.0 2e-27 MLTRSDSANDAGRISRGPVASPCPSERGMGAQNRGVKSENVRASNMSTVLRNILTLPGEV TRAGLSQRTGMTRATISRLVDDLVGAGLVRELEPGDGGGRGRPANRLTPAEGSAVALGVE VDVASLDVMLVDIAGRELGRRRIERDFADSAPEETMALAAREAHALLEGTLPDGALFLGT GVGLPGLVSPTRLALAPNLGWRDIPHDQLLAPLADLNPVVVANEADLAAYAVAYTRPGVA GGPSTFVYVSGEVGVGAGVIVDHRPMSGARAWSGEIGHMCADPNGPLCRCGARGCLEAYL GVRALAEHVGAPAGSGPRGILRCAGLVDEAGAKTSGSLGVSAEQERARAVLAEAGAALGR VLSGVINAMDIPHVVLGGAVAELSGALLDPAREEIETRTLQAPWSSPIVEVLPDSASLTV RGAAFRVLDALVDDPAAFLG >gi|292820730|gb|ACYT02000038.1| GENE 5 3504 - 4679 1750 391 aa, chain + ## HITS:1 COG:BMEI1387 KEGG:ns NR:ns ## COG: BMEI1387 COG2115 # Protein_GI_number: 17987670 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Brucella melitensis # 8 286 44 339 435 92 28.0 1e-18 MTTTPDNKFSFGLWTVGWNAVDPFGTGTRPVLDPWEYTEKLAEVGAWGITFHDNDVFGFD ASDQERHDRVMKVKEAADAAGLVIEMVTTNTFTHPVFKDGGLTNNDRSIRRFGLRKILRN VDLAAEMGATTFVMWGGREGAEYDSSKDLNAAFDRYKEGLDTVAAYIKSRGYNLKIGLEP KPNEPRGDIFLPTVGHALALIAQLEHGDIVGLNPETGHEQMAGLNYTHALAQALNAGKLF HIDLNGQSGIKYDQDKAFGHGDLASAFFTVDLLENGFPGGGPRYEGPRHFDYKPSRTEGM EGVWESARANIEMYLTLAAKARGFREDPVTQELLEAASVPELGESTLAAGESLEDFLADR SSYEEFDAQAAGEREYHFVELYQQAMRHLIG >gi|292820730|gb|ACYT02000038.1| GENE 6 4706 - 6076 914 456 aa, chain + ## HITS:1 COG:Cgl0113 KEGG:ns NR:ns ## COG: Cgl0113 COG1070 # Protein_GI_number: 19551363 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Corynebacterium glutamicum # 6 442 3 417 460 353 51.0 3e-97 MGERPFVAGVDSSTQSCKVVVWDPVSGEVVREGRAPHPEGTEVDPRAWWDALNEAVAAAG GLDDVRALSVGAQQHGMVVLDERGEVIRPALLWNDTRSAGAARDLIAEREGDSTGEAWWA DATGSVPVASLTVTKLRWLADHEPEAAQRVAAVCLPHDYLTWRIAGGFERLGLEGLATDR SDASGTGYVDRSGSAYRRDILAQALRCDEERAEHIVLPRIAEPYEVVAHGDEARGWGEIA LGPGAGDNAAAALGVDLGPGAAMLSLGTSGVVAAVSESAVSDPSGLVTGFSDASGRWLPL ACTLNASRIIDAMRRVTGLGYEEFDEAALSVPDAGGLRLIPYFEGERTPNLPDATATLEG MTLANCDPAHVARAAVEGLLTLMRGALDAVRAQGVPIERVVMVGGGARSRAVRALASGIL GAEVEVPSPAEYVALGAAKQAAALNVADPGAGGSDV >gi|292820730|gb|ACYT02000038.1| GENE 7 6069 - 7250 831 393 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 2 387 4 381 384 214 34.0 2e-55 MFDETITRWGTHSAKWDLLAAHLGEDALSLSVADIEFATCPEVSRAIVDACAEGIFGYTE VFDDFREAAARWQERRHGWAVDPGDVHFFPRIVQCVSALCSIVLPGSLGRPPRVVTLEPA YGPIIEVVERAGCELRRVPLDLSGDTPRIPEDVFARAMEGADLLLWCSPHNPTGRVWTES EMEMVASLARQWELLVLSDDIHADFQRPGRNRYRPLAAVAPRLWETGRLIQCASPGKTFN SAGLEASAIAVRGELGAHLEEAKRLMGLHNPNFFAIPATIAAWNLGEAWVDELRDRIDAN LRVAVEYLRHTLPRARVVDPDGTYLVWVDARAYLASSASLDEAVATSRVAVSPGEDFGSE YEGFFRINVALPERDLVRALERLCEAITALASN >gi|292820730|gb|ACYT02000038.1| GENE 8 7299 - 8756 2140 485 aa, chain + ## HITS:1 COG:HI1107 KEGG:ns NR:ns ## COG: HI1107 COG1757 # Protein_GI_number: 16273033 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Haemophilus influenzae # 8 473 2 466 468 474 59.0 1e-133 MSVTSSEKRAHRTPSLLVAVIPAVTLIVLLGGGYIAASLPVEPLLIASAVVAGIVAMTLG YTWDEIIGAISEKIAKTMPAVLILIVVGALIGTWMAGGTIPMLIYYGLKIINPQFLALIA LVVTAIVSLCTGTSWGSAGTIGVAFMGVAVGMDANLPMVAGAIVAGAYFGDKLSPLSDTT NIASLATGVNLFTHIRHLMWTTIPAFLTSAVVYLIFGLQSSGGTVPEKVGTILSTLDSAF NWNLLLLVPVLVVLVGSVMKMPTVPVMLVSCATAMFNAVVFQGVSFSNSVVASVNGFKVD MVGKSGFQADSVIEDVTRLLERGGMNSMMSVLLICFCAIAFAGTVSVSGSLDVLISSLLA PVKSTFALIASTIVIGLAVIGITSNGQVSLLIPGEMLRGEYIKRGLHPKNLSRTIEDAAT VWEPILPWTSAGAYMAGTLGVATLAYMPWAISNWIAIFFALVWAATGIGIAKLTPEEQKA LEAEG >gi|292820730|gb|ACYT02000038.1| GENE 9 8633 - 8929 161 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYVFVMCLTIACLLVSVCVEPRGIVHTSRMLLAYAPHGVHTTRWGTPTRGSPTSTTNSQP SASRAFCSSGVSFAMPMPVAAHTRAKKMAIQLEIAQGM >gi|292820730|gb|ACYT02000038.1| GENE 10 9023 - 10330 1032 435 aa, chain + ## HITS:1 COG:no KEGG:EF2349 NR:ns ## KEGG: EF2349 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 26 405 9 382 459 125 27.0 2e-27 MPEDHAANDTTHVPFREVDQDFFSDLRKTLESTNINFLLGAGCSMPAFRTLGNLEELRVK LDDKKNTLGKDREVIYRLIEAEIDRRFFMGSIYRNIEYVTGSKEDSEDDIQQTRAAYKDF CTEAIQTVANRESVDKPKQVTFFTSNYDLGMDLALDEAGIPTNSAYLGRFSRIVGQQTFG NRVFSNGIGLGYRTEIPSANLVKIHGCASWRHDGDQLTIDDSYQILEEIKELFGAISRFG ERQPEIRPNTSEPSESRTTETSTKTSADFETLKIQAETTFKLAKKRKHGKNNLVAKLDEL DKARNKLAVVLPNKGKFASTVLNETYYDQLRRLSNQLELPNTSLLVMGFSFADEHIRSLV TRAAKANPTLKVIIFCYSRDTTTTIADYLGYSPKEYPNIELVVGPRFGQALGTEAKDHQR LDIHAIADILRKASA >gi|292820730|gb|ACYT02000038.1| GENE 11 10327 - 12330 375 667 aa, chain + ## HITS:1 COG:MJECL08 KEGG:ns NR:ns ## COG: MJECL08 COG0433 # Protein_GI_number: 10954499 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Methanococcus jannaschii # 502 619 394 504 520 74 34.0 6e-13 MTSYTGKEISSLRIGTVTAVRGRRIDITVDVDKNDSSLIFQGEIISNVSIGSFLVVRRGY AHLVVQVDEEELIESSAWENSDYQRDVDRNTRILKTSLLGEFQKDTSVSPFQTHFVSGSQ TSPLIGNIAYLASPEQTSKIYVSSFKPNTQITIGHLASDSTIPINLDINTLFSGHIGIFG TTGSGKSYTLTQLYTQLFTKLKQTKSSRTLLTNSHFLLFDFNGEYCSSHSDQVLCEDAFR IVYGPANSGTMGNCPKYAHIPLDYKILNDKDFWFTLLEASEQIQRPFILSALRRLLDNFD LASQIHAIFIQFFTVLHEHATEVNHLFDFLVSVHHLTPQWNHDFLNILDSFRNELRFHTG TQSFHIKTATGYTYPSDPNFRRELNNIFASLFPQGFLPNLSDLSLFTIKVKIRFMEEIIS SIANENTLHPLMLRLDNCVHMLRSWFTFTSKSETPHHLLEIINLKFASLDERQLIPLIVT RAKYVEHKRLQTSSKGSHYLNIIIEEAHNILSREVNLASDSWRNTRLETFEIIIKEGRKF GVFITLASQRPAEISPTISSQLHHYFLHRLISSVDLGSVKNAVTFIDGKSFESIPLLPCG TCIISGTSVQIPAIVKIDELPAERRPDNETIDLVKLWGLASDSSKEAANTEVGSVDTQES ESPAEES >gi|292820730|gb|ACYT02000038.1| GENE 12 12481 - 13173 651 230 aa, chain - ## HITS:1 COG:BMEI0399 KEGG:ns NR:ns ## COG: BMEI0399 COG2376 # Protein_GI_number: 17986682 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Brucella melitensis # 26 220 45 231 231 77 34.0 1e-14 MRSPELIQRIQDSMTLLIESSDELRDLDQVLGDGDLGITISAGARAVIEALKAMPTEPEP APSDVARACAKAFANANPSTMAALVAGGLLAGSKVWVGCEDVTAVEAEAFIRAAASSISH RGKSQVGDKTILDAMVPAVDSLARSIEANPAVASESALAAAALDSAIADAAEAVVATRDL QSQRGRASWLQDRSIGLQDPGATAFLRALEAWRDASTGERGPRAAVVENL >gi|292820730|gb|ACYT02000038.1| GENE 13 13176 - 14177 1268 333 aa, chain - ## HITS:1 COG:mll7280 KEGG:ns NR:ns ## COG: mll7280 COG2376 # Protein_GI_number: 13476064 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Mesorhizobium loti # 2 331 6 335 337 355 56.0 7e-98 MKKIINNPDQFVDEMVEGILLAHPDQVRTPGDDRRVLVRADSPAPGRVGIVTGGGSGHLP LFKGYVGKGLCSGVAIGNVFSSPSVQQCADAAKAVDGGAGVLFLYGNYGGDVFNFDLAVD LLELDGIETRTVLGCDDVASQPKERAKDRRGVAGIFFAYKAAGAAAERGDSLDEVAAVAQ KVVDNTATMGVGLSPTILPTTGAASFDLPEGEMEIGIGIHGEPGIHRGPLGTADEIADQI LDSVIPDLGLAEGDRVAVLVNGLGATPLEELYLLYRRTHQRLVDLGVVIERRYIGEYATS LEMAGASISLLKVDDELLELLDAPAQSPFFREA >gi|292820730|gb|ACYT02000038.1| GENE 14 14180 - 15268 1357 362 aa, chain - ## HITS:1 COG:AGl81 KEGG:ns NR:ns ## COG: AGl81 COG1172 # Protein_GI_number: 15890147 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 330 10 339 346 198 41.0 1e-50 MNKTLRDTNSRIDGFSASLLSRLRRDRSIARMVLILLVAIGVFSILSPSVFLTGLNLQNM LLGVAEIGILSIAMMISMVTGGIDLSLVAIANLCAITVSTLYTSSALGGSEQWGPVIILI GLGVGLLCGLVNGVLIAYVGVTPILATLGTMQIFNGLAVVWTGGKTLYGSPEALTAFGKT AVAGVPLLFIVFGLVALLVGFILNRSPLGLSLSLEGSNGTAARFSGIRSSRILLSSYLLT GFLGSLTGIVFIARNPTASADYGASYVLLVIVIAVLGGTNPNGGFATVGGVFLAALTLQV VQSGFTSMRLSAFQYAIAQGVILIGVLVLDCVDWKDVRTRLTSTFRRPQPAAALNSGATE RK >gi|292820730|gb|ACYT02000038.1| GENE 15 15274 - 16344 1051 356 aa, chain - ## HITS:1 COG:AGl83 KEGG:ns NR:ns ## COG: AGl83 COG1172 # Protein_GI_number: 15890148 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 317 8 307 325 198 45.0 2e-50 MNMNTVARRVLRWIWGPNREGIVLSVLVLLTIIMSAISPAFFTVSTLFSLLRSSIVPMIY ALGVLLVIISGGIDVSFAAIASFASYATIVFQLSRGINIGLVGSFAMALAIGALLGLLNG YLISRFKLPTLIVTLGTQGIFQGFLLAYIGSKYIAQLPEGMASASTANLVSVETSTGVAL LHSMIIPAIILAIVIALVLSRTMFGRAIYAIGGDTESAHRAGINVKRTQIWVYVIAGTLA ATAGMVYMILGRSANPQELVGHELDIIAAVVLGGASIFGGRGSVRGTILGVLLVQLINNS LILIGVPSAWQRAAVGLLLVAGVGIQALAAKRAARTLRAKSAQADNSNAVPQAVEG >gi|292820730|gb|ACYT02000038.1| GENE 16 16341 - 17885 165 514 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 278 494 7 214 311 68 27 8e-11 MRSNVDEAPRPHGEGVSVQENPFLEVRDIVKNFGGVRALDGVNMAVWPGEVLCLAGENGC GKSTLIKVISGVHAPDAGRILIDGHTVSSLTPLSAMDAGIQVIYQDFSLFSNLTVAENIM MTSSVTEKKKFFSSTSAKQQAAQIVERLGVPLPLDADVEQLSVADKQLTAICRALAGNAK LLIMDEPTTALTQREVARLFMVVEKLSAQGVALIFVSHKLDEVMAISQRVTIMRSGRNVI DSPVEDLDREKITHYMTGKELDQSRRVPPLAEDAEERLRVESLTSQGGFEDVSFSVKKGE ILGITGLLGSGRTEIAQALFGLLPIDSGRVYIDGEHVEVGSIGQAIKAHIGYVPEDRLTE GLFLDKSIADNVIAASIDHHTSKLNTLRKDKIRQTIAHYFESLRIKAPDVLAPVRSLSGG NAQRVVLAKWLARHPKVLILNGPTVGVDVGSKAEILDILREQAEAGMAIVIISDDAPELV SCCHRVLITKGGHIAAELAGDDVDARTIRKMVVS >gi|292820730|gb|ACYT02000038.1| GENE 17 17977 - 19197 1593 406 aa, chain - ## HITS:1 COG:SMb20316 KEGG:ns NR:ns ## COG: SMb20316 COG1879 # Protein_GI_number: 16264050 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Sinorhizobium meliloti # 98 406 23 333 333 240 42.0 3e-63 MSSYRRIKPSDMRESELPLRETACNVSDCDAGHAMMRASSQEMANPERPTTRSRGSDDMK IGRLTAASVSIASMLALTACSTVGGTTGDNSASNTGSAAGDSGKTMVTVVKVKGIAWFDR MDVGVKEWGADNGYDTRTEGGTDVAPEKQIQIIQDLIAQKPVAITVVPNSPEALSAVLEQ ARAQGIKVVSHEATGIKNVDVDIEAFDNASYGVDIMKNIGECTGGTGKYVQFVGGLTAKT HMEWVEAAYDYQQKNFPGMERVETPIESTDNETAAYEKAKEVLGKYPDIKAFQGSAGNDV PGIARAIEEAGLSDQVCVMGTSIPSASAKYLATGSIDKIFFWDPALAGKAQLQIAKILAD GGTITEGTDLGIEGYNNLHKLDGYDNVWVGNAQIAADAEQAKNYDF >gi|292820730|gb|ACYT02000038.1| GENE 18 19418 - 20167 855 249 aa, chain + ## HITS:1 COG:VCA0940 KEGG:ns NR:ns ## COG: VCA0940 COG1349 # Protein_GI_number: 15601693 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Vibrio cholerae # 1 226 4 232 253 115 30.0 7e-26 MTRQDTIVSMIEATGFETVSSLAEALDVNVSTIRRDLEHLAEAGLVRRTHGGAIPIPQDE DTEEFLQDSPNRAEKRAIGPAMAERILDGQSVFIDSGSTCLEVARALDARRVTVVTHDLL VGLEILKKPSLNLVFVGGELLPNRTHMWGPTAIDQLDHIRVNTAVFGANSVMEDGIYASS GYSIELQQKVRSIASTAYFVADSTKFGRNALYKVLGIDAFTAGITDSFLSPISAAAYPIP LIRAEVAQS >gi|292820730|gb|ACYT02000038.1| GENE 19 20280 - 20933 400 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190849|ref|ZP_06609011.1| ## NR: gi|293190849|ref|ZP_06609011.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 217 1 217 217 309 100.0 6e-83 MTAARDDDFMALPGMEADSNAHDTARLRSDDATPASSKSALDALLDEYRARAERANDIEG AKALLRLFGAYEEIEKIQFPYDQVRKEVDALSAMAKGKYSNYIKFTTKKERNAPQKELLQ ARSEAKQLRTHADLDLFDAERRAREEQALRRSELRPLTQQLDEINNRLTIVNATLAGQTQ QRRQRHYQRPRPHLPRRLQLGTNRPSYVAQRSKRRKP >gi|292820730|gb|ACYT02000038.1| GENE 20 20984 - 22855 744 623 aa, chain + ## HITS:1 COG:PM0698 KEGG:ns NR:ns ## COG: PM0698 COG2189 # Protein_GI_number: 15602563 # Func_class: L Replication, recombination and repair # Function: Adenine specific DNA methylase Mod # Organism: Pasteurella multocida # 12 609 9 620 636 373 39.0 1e-103 MSDTINQVPDTTPDFTTEAANKLAQLFPEVVADGKVDIEKLKTILGVHVDDARERFGLTW PGKAQAIGAAQTPTTATLMPDKENSVDWDATQNVFIEGDNLEVLKVLQKHYYGKIKMIYI DPPYNTGKDFVYHDDFRDGMSAYLEWTNQVNESGKVSSNTESDGRYHSNWLNMMYPRLKL ARNLLVPDGLIFLSIDDSEVAHLKLLCNEVFGQANFVAELVWKKGGTGKNDSQFAVVEHE YILVYARRYTEARFGLDQYRQTTTQYNHSDEHGDYSLVRLDQQNLQYSASLDYDLVGPDG EIYRLSHRNPQAPNAIWRWSREKVAECMDQLVFHNGNVYTKNYKKSGVKVRSLLAGETFG VTRTGKKEAEDALGVAGVFDFPKPARLIKFLVSIATEPHSHDIILDFFAGSGTTAHAVMQ LNAEDRGNRRSISVQLPEPTPAGSAAQEAGFQTIAEISRERIRRAGKKILENEVSKPDGR ADSLDIGFRAYKLVDTNFAKWRADSSLSEEELADLFAGMGESADDDARPEALLTEVLLKL GFSLTEQVERVDVAGLEAFSVADGLLVAYLNEHVKPTLEQLRAMVALEPGRLVVLEDAFQ GDDVLKTNLVQECRSHGVDLWTA >gi|292820730|gb|ACYT02000038.1| GENE 21 22871 - 25837 2510 988 aa, chain + ## HITS:1 COG:FN0417 KEGG:ns NR:ns ## COG: FN0417 COG3587 # Protein_GI_number: 19703759 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Fusobacterium nucleatum # 1 978 1 975 997 615 38.0 1e-175 MRFQFDPHQPYQASAIEAVTDLFDGQPADADQLVTTFRLLPSEPALFDRAEVSGQVSLDI AAEVGAVGNNLVLDEDTILANLQRVQDRNGLESAQALADGLQFDVEMETGTGKTYVYLRT AFELAKRYRFTKFIILVPSVAIREGVKTSIDLMREHFRHLYPEINMDASVYAGERAEEVR DFASATSLQFLVMTIDSLRGDKNTRIMYQNRDKLAGLRPLDYLRATRPIVIMDEPQNMES MLAQSAVADLDPLCTLRYSATHRVTRNVVYRLDPLDAHQLGLVKTIVVSDAQELGGSAKP YVKLLRVSRDPFKASLELVCRKKDGSYAKRKVIAAQGDDLERISGGNPAYEGNWRVSEIS VEPERIELSNYGYLSVGDEIGSNQDAVFREMIRETIREHIRKELQVHARGIKVLSLFFID KVASYLGDGINNLDANGDFATWFDELYTEELDRQPEARDIMPATALDARSGYFAQMKSGK GKNAVMTFKDSSGKTKADDDAYELIMRDKARLLSMDEPVRFIFSHSALREGWDNPNVFQI CTLRDMASETERRQTIGRGLRLPVNQDGERISDTGLAQLTVVSNESYKAFASALQNEYQK AGVAIGFVRKQEFSRLPITVDGKETALGAKRSAEIWDHLHRRGFINEQGEVQGSWGPEQL GFTVDLPEPYAEYEDDVINIVNACKMETIIKRKRKRVARKLNKELYAAPGFEEFWDKITQ RTTYRVNFERQALVDACVNRIKTAPRTEPIRIQVTRTKMTMTRGGTKGNTLGSRGADLTG SYPLPDIVAQLQEATSLTRRTIIDILIGSGRLGEFLGNPNDFIKMATVCIQEELAHVVVE GIQYEKIGGSIYELRELQEDGLEEKDRFLDQLYKVTNTDKTDFDYVVFDSAVERQFAEYL DGLEDIRLFMKLPNKFRIPTPVGDYNPDWAIIKTEDGQDRLYLIRETKSSLDPTKRRPGE NAKINAAIKHFEAIGVNYKVAAPDNWGL >gi|292820730|gb|ACYT02000038.1| GENE 22 25843 - 28710 2128 955 aa, chain + ## HITS:1 COG:BH2817 KEGG:ns NR:ns ## COG: BH2817 COG0553 # Protein_GI_number: 15615380 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Bacillus halodurans # 2 624 21 540 566 230 29.0 9e-60 MEGGVLSDYQAKFYAYELDRSYACDHVGKLAGLLFDAQVEPKPHQVDAALFALRTPFTPG VILADEVGLGKTIEAGIVISQYWAERKRRILIIVPSSLRQQWRQELDEKFALPASLLERG NLDELLAPNAAEQVLICSYEFANSQHLTLTRHWDLVVCDEAHRLRAYWTGQAKIATNVAR ICRASSKTVMLTATPLQNRLEELYGLVAVFDPDFFRSLDTFKERYVKNPGGVGNDDLSKR IAQIAKRTLRRDADKYIRFTTRMPLTVAFNPSQAEVELYEKINAYLQRPFLWAFSKSQRH LSALIVRKRLGSSSYAVASTLASIAARLEAEAKAGMRRNDAGGFISDPDLTGEEREDAQE SNETDTASDSAPLSGMERESMLAEVAELRSYADLARSITVNQKAVKLVDALEQGFDRLRE IGAPEKAIIFTDSTVTQDYLARSLAEAGWGEGIVMFNGTNNSAHANQIYQAWLKENEGSD LITGIPAADRRKALVDEFRKRGRLMIATEAAAEGINLQFCSMLVNYDLPWNPQRVEQRIG RVHRFGQKHNVIVVNFSNKGNVAEERILQLLTEKFKLFTSVFGASDEVLGQIEDGLDFEK NIAAILERCTTAEQIEEAFNELEARYSAQIDREMKRTRKKVFDNLDPKVRDKLKSYDAQT GVVLNAFERLLIDLTRHELGGYASFNDTGTQFTLTSAPAAGIPTGNYFFKSQPRTGAHQY RYASDLAQWVVTTAKTRTTPPAHLVFQTHGSDRATAIAKRLRGRSGRISAHQVTFTMQAA DQPLKETYLLLAGFFADGTPMDQEQIRDLLDLNCVSTQPNQVNTQGFEDAIEQLRQTVGV DVQERNATFYLQQEELIDAARLDLKAIFDAKIRDYHAKETTATKAARKAKNTAEQLKLTR EARSWRRKAEEADDEYRRQRDKLRDESDAYLDKASMALEPKEETNELFTVSWEVS >gi|292820730|gb|ACYT02000038.1| GENE 23 28778 - 29161 441 127 aa, chain + ## HITS:1 COG:no KEGG:VC0395_0570 NR:ns ## KEGG: VC0395_0570 # Name: not_defined # Def: hypothetical protein # Organism: V.cholerae_O395 # Pathway: not_defined # 4 89 5 92 111 85 43.0 5e-16 MLTRAFVSFDYDHDLEIKVALLAQSELSDSPFAIADWSIKEASPTWKSEARRRIRQCDVV IVLCGRHAHTATGVAEELKMAQEEGIPYFLLAGYSTGDVTKPSTALLSDKLYEWTWDNLK ILVGGSR >gi|292820730|gb|ACYT02000038.1| GENE 24 29221 - 29625 148 134 aa, chain + ## HITS:1 COG:no KEGG:SCAB_50681 NR:ns ## KEGG: SCAB_50681 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 2 128 46 168 175 66 36.0 3e-10 MADRVSSRRATANAFFLTVNTGLVAVAGLFPSNSGPWALRATCLAGAVLAFCWFLLLRNY RELNKAKFKVINAIEHEYLPVQPFRDEWIKLGNSDEPISRIQRLKVEYKQLGNVEKYVPL VYAALYVVLGCLGA >gi|292820730|gb|ACYT02000038.1| GENE 25 29626 - 29928 201 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190855|ref|ZP_06609017.1| ## NR: gi|293190855|ref|ZP_06609017.1| putative glutamine amidotransferase, class I [Actinomyces odontolyticus F0309] # 1 100 1 100 100 165 100.0 8e-40 MNYIERDAELIRQQIPDGTEIPAHSEALFRAYAVLMRAKGANTRCEDVHDAWAAWISETD PDHEAARPFDQLDAETRSADAPFLQAIIQAARVKQQESQA >gi|292820730|gb|ACYT02000038.1| GENE 26 29885 - 30118 136 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAASTPASAANPPIEDELHQAARTTDAKQTVNNLRTGLLLRWRVVARGVYRVWGVWLLR MNASKPAIPVALHEPLG >gi|292820730|gb|ACYT02000038.1| GENE 27 30075 - 30194 86 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGGFAAEAGVDAAVMLHFAIRSQVKRLLSSDRPAMSQAA >gi|292820730|gb|ACYT02000038.1| GENE 28 30287 - 31273 912 328 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190857|ref|ZP_06609019.1| ## NR: gi|293190857|ref|ZP_06609019.1| hypothetical protein HMPREF0970_01352 [Actinomyces odontolyticus F0309] # 174 328 1 155 155 296 100.0 9e-79 MEWIDYAVKGIGFLVALGTFTKLAIEIYKVIKNGFDFKNWFSYRRKVKGLKYLRIFQKRG ALGFRNETSNMVRQQLTREIAKDIVHSYSLEKRVSRFTRSTREVVKALVTLFIQFVILVC IAALLSITEATPSQQKLIDAGKYALWWFFVGTVGISILQLIVALSRACEEFRSMVETSRL NVVQVPIESIPYCVEKDKDYIFVDATIRKRYQVPFMGRADSVQMLLDHGAVTEVEVALKK SEAKQIKADDYEEVAAQLVDSFLAKTREHGSEPVCFVFSQAGITAVLVTQLLRSKGLRAF YIGATNGYESEVREAIREIRILRESGLI >gi|292820730|gb|ACYT02000038.1| GENE 29 31494 - 31733 159 79 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_1159 NR:ns ## KEGG: EUBREC_1159 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 77 147 223 234 102 59.0 3e-21 MGTLGCVPAYDRFFQDGVAKYKVTTQEYSPESVLRLVDFYEAHNDRLEEVRRGMKRDDLI YPQMKVLDMGFWQIGFETS >gi|292820730|gb|ACYT02000038.1| GENE 30 32103 - 32318 66 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMAPSKRNCRIAQRIARTPKRARGAHTFSLCSRNVAVWQVRLRRIQRRLCHRIRTGPRPK GASITSTTTHP >gi|292820730|gb|ACYT02000038.1| GENE 31 32426 - 33070 427 214 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293190860|ref|ZP_06609022.1| ## NR: gi|293190860|ref|ZP_06609022.1| hypothetical protein HMPREF0970_01355 [Actinomyces odontolyticus F0309] # 1 214 1 214 214 426 100.0 1e-118 MSTTIDVYPTTSFMPLVEQTRARTQELFQQLLDRHGVGSRIEVKAFYPSAGGSQLRFVGE SLAWEPGMELGFGYWINGEWDSTSWPGCFAVEDDDRITEEDLIYPFNSKPEHLGLWSIVE EFEDLLPPEQLTKVLRQDHYWYEYRNMAGPAVASTGYGLVAAALAEATNGVIASFDSAFD IEHNGESAQKFLTWWGEKQMTFYGTESFKKSRNV >gi|292820730|gb|ACYT02000038.1| GENE 32 33515 - 34207 374 230 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_1159 NR:ns ## KEGG: EUBREC_1159 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 1 223 1 223 234 256 53.0 4e-67 MEAIDELISAAQTFYDDARANENGRSRSWEHCYRVFRDARTDPSPDYDYLSLHLAFYLAS WGMYRGSSFLLQKDYKVLSPVVEEVLKPEYDCLFGVACVGLREDEVQARLTEVNERISAH FWPIRNDIAGRTVASPVSPVLITKILMGTLGCVPAYDRFFVDGIKTYKVTTQEYSPKSVL KLVDFYEAHNDRLEEARRGMQADDLTYPQMKLLDMGFWQIGFEKEAKDAK >gi|292820730|gb|ACYT02000038.1| GENE 33 34115 - 34381 226 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPRAGATILIRARIVVESLRSTNQLIDGFHSCAPCVSTEGLSASRALVVSAVSLYGVDS DARNTPPHRADMRRSFPRVDEQSRFIAQ >gi|292820730|gb|ACYT02000038.1| GENE 34 34665 - 35465 345 266 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190865|ref|ZP_06609027.1| ## NR: gi|293190865|ref|ZP_06609027.1| hypothetical protein HMPREF0970_01360 [Actinomyces odontolyticus F0309] # 1 266 1 266 266 473 100.0 1e-132 MKVPPLSERPDAEEEEQDFLAPPSRRKKRSLAARRAALRPWAIGIGLTVLVAVAAVGAYT LGASIGSWNDRPSTAATPTVHPAPMPSVSSEAAMSGGYEIGPDGVLVRPAQFAADTYTKP ELPEEAKENTERGAEAAAEHYLALLIYSWNTGDTQPLADMSDPSSNFAKNHIANTQEMYT NGWSFGNSVTVQEVLRLEAVSSQDGTIPPNTVGVRFRVSANNGTRCKGQSIIVDDSEHSS TITLFMTWKDNRWTEVQGSATDHDDE >gi|292820730|gb|ACYT02000038.1| GENE 35 35452 - 36366 865 304 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190866|ref|ZP_06609028.1| ## NR: gi|293190866|ref|ZP_06609028.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 107 304 1 198 198 347 100.0 6e-94 MMTNKLRIFLAITATSSSLLILNCLPAIALAPSSGFDANGIDRDVNTDMWEDENEDSPGT VGSPSQPSEDDTGSPRATEPTTTNSALDFALGYHCEHPVSYDSGHLMFPTYWRCDDPPPS VETPSDPPSTQKILRHAAATIHADGAGIYKQPPHVSYTNKYIPTLVSVTNPTQTHIINLL GHDITITLKATKYEWDWGDGTPNTITAYQGMAFEKGMDPNKDPRLIRHYYTAPNGWKSFL DGPYPSATRTITLTTTWAGTATNPFTGDTQTINGLVTTTETTGPFPLGQLIVNNTDTSEE KQGH >gi|292820730|gb|ACYT02000038.1| GENE 36 36381 - 37076 450 231 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190867|ref|ZP_06609029.1| ## NR: gi|293190867|ref|ZP_06609029.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 231 1 231 231 457 100.0 1e-127 MISKLSTIGKWIIAVIATVVIIGASFTGFHAFNARAHANAELQSRAQSPQSDSTEQSGPQ SGDAPQSAEPTPAEITKPTPPPHLYAGGQIGAQATSQWYIDLWAYAFNTGDTEDFMKVCQ VEGYCDAFAHDLERMHTDAYLVKPLTNTYLQTNKIYDCSLQKAGTQGICIEFTYLQTPAG FHHLTEEKASEQYDTISTVTDEESNNEQTLFRVLFLEERGDTWVVTHIWYH >gi|292820730|gb|ACYT02000038.1| GENE 37 37747 - 38913 624 388 aa, chain - ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 19 290 80 340 361 72 29.0 2e-12 MRNSVAVAAVGALAAGIVSIPAAPANAADTITAADQAYFSYYGFDRARAKGYTGEGVTIA MIDGKVNTSVPELAGANITVKTPCTINSSPALETHGTGVASILVSADYGVAPKVSLLAYQ GTFGADGDQGSSDCDDPSGVTKDSQPWLLNQAMNDGAQIINVSASTPNEYKELKWVTARA IAQQVILVNAAGNSSRDDDATSLSAWSGVVGVTAISVDGTRQDYSSWGQGVVTTSIGGPV LFRNIETGANDTISGTSVASPIVAGVLALAKQRWPEATSNQLLQLLVKTGLNPDHGWNKY TGFGGIDPGAILNTDPSQFPDENPLAQKQGGSSPTPEEVQQYADGVVDPTDIVNDSSYTY RGFDESKLKDGLNVYPTHLGTSPRYHRK >gi|292820730|gb|ACYT02000038.1| GENE 38 39135 - 40049 1024 304 aa, chain - ## HITS:1 COG:BH1390 KEGG:ns NR:ns ## COG: BH1390 COG1108 # Protein_GI_number: 15613953 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Bacillus halodurans # 32 304 13 285 292 177 40.0 2e-44 MSTVIHAAGGGLAAAADFLSPYDFFRDLTNPALAFLPRALLIAVVAALVCGSVGVHVVLR GMAFIGDAVAHSVFPGLAIAFVCGGSLVFGGALAGVVTAVLVALLAQNRRLKEDSVIGVL FVGAFALGVAIIARAPGYAGSLQDFLFGSITGIPASDVPVVLAGALFVLLMLFLAHRPIV AVTLDRESARAAGVHVLLADLSLYVAVALAVVISVQTIGNVLVLALLVTPAATARLLCDR LGTMMILSPALGASGGLVGLYLSWALDVPTGATIVLVLTACFVLAWVFAPRHGLLARTLR ERRG >gi|292820730|gb|ACYT02000038.1| GENE 39 40046 - 40765 255 239 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 209 5 218 305 102 30 3e-21 MSQLRVTGLGASLGGRSVLEGVDLEARAGELVGLIGPNGAGKTTLIRSILGLIPSSGRVE TDGAIGYVPQRHEFAWDFPISVRDAVLQAVTVRRGLLGRARTPHFRAVEEALSLVGMRDL AKRPIGELSGGQRQRVLVARALAIRPAVLLLDEPFTGLDMPTQEMLMDLFRALADGGRAL LMTTHDLIGARAGCDRLYLLRRTIVASGRPDELADADPWIRAFDVRPDNPILDALGVRA Prediction of potential genes in microbial genomes Time: Tue May 17 06:43:17 2011 Seq name: gi|292820728|gb|ACYT02000039.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.16, whole genome shotgun sequence Length of sequence - 928 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 716 876 ## Sare_2619 hypothetical protein Predicted protein(s) >gi|292820728|gb|ACYT02000039.1| GENE 1 2 - 716 876 238 aa, chain - ## HITS:1 COG:no KEGG:Sare_2619 NR:ns ## KEGG: Sare_2619 # Name: not_defined # Def: hypothetical protein # Organism: S.arenicola # Pathway: not_defined # 8 238 7 238 309 193 46.0 3e-48 MSVFALIVSALLVIAGAPSSFADPSPDPDLAQSVAAHEEWSNEASEIAVGHVDLGPRLID GQWRAGLRHDAESGPVWRDPNQTVLRVSDAAVMTAPDSADYPFLADVAGKPVYVVPQTQN PNVVWLGWNTQDPAVTATIDRGLTMRVGPVSGPGRAWLFLQSGTFGKPLLLADSGAAPGD VWIDSGTHVHANWAFSAPGTYTATVTFLGTTTAGEAVAASTTLRFAVGDAASASEALA Prediction of potential genes in microbial genomes Time: Tue May 17 06:43:22 2011 Seq name: gi|292820725|gb|ACYT02000040.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.17, whole genome shotgun sequence Length of sequence - 2702 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 147 - 1760 1709 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 2 1 Op 2 . - CDS 1832 - 2701 1177 ## PPA1500 hypothetical protein Predicted protein(s) >gi|292820725|gb|ACYT02000040.1| GENE 1 147 - 1760 1709 537 aa, chain - ## HITS:1 COG:BH0516 KEGG:ns NR:ns ## COG: BH0516 COG0803 # Protein_GI_number: 15613079 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Bacillus halodurans # 362 531 127 298 300 117 38.0 5e-26 MLAASALALTATLAGCAPAPDPASDGELRVVATTGILADLVRNVAGDRVRVTQMVPDGAD PHSWEPSLRTVRDVAYADLAFSNYLMLEEHALIRALDSNLPAGSRSVSVAEEAAKNGATI LPLVEDRALDTPWLGMRVWGDGADMGATRASQIDLTTTGVDGPGQAAAYLTTSFGQPEIA FATSDGFNAAGGYDTDTAQLPADAHQHMSWAFTAPGVYRVHFRANLRTTPGATPVSVGEG SAVFAVGTPPEEIAASEGRRVLSAGHADITVNLTTKRVELASDAGALSGDEASAPCVGGG TTGAAVASTMECTDLDQVVIEVPTRALTTIPGEASFRFIGEPGASVYMLPQAVLGKHVHG DIDPHLWHDVHNAQAYVRVIRDSLISVDPDGEATYRANAAAYLTRLDELDATVASTIASI PEERRKLVTTNDAYAYLANAYGLTVAGFVAPNPSVEPSIADRIKLQATLSDSSIPAVFLE PNLARTRSTLRTAATDAGVDICPLYGDTLDDQAPTYIDMMEHNARSLARCLGGKEMP >gi|292820725|gb|ACYT02000040.1| GENE 2 1832 - 2701 1177 289 aa, chain - ## HITS:1 COG:no KEGG:PPA1500 NR:ns ## KEGG: PPA1500 # Name: not_defined # Def: hypothetical protein # Organism: P.acnes # Pathway: not_defined # 1 250 569 834 880 198 46.0 2e-49 ATRITREATEAEAATLASNSAPANTARTTLTVSVGDGASGNATDGHFDLGPAIENGTLVA RVKDDRTQPAQWVDPSSLTFALGDAARITAPADLGFVATPGSSVWLIPSTQIAGVPWLGL NSQREEIVTGTTGPVQFTLDAVEGPGRVAVFNAGALGSGVGEHVFDGPGTGYTLGANTHA HQNWVFTAPGTYTLTITMRVTPNGAALAGSGFGSGGDLTATGATGPNGRPMVSQVVGRTA SGKECDLSLATTGADTIPLTVVSLTWALTGAACVWVGAIGRRRNLCKAL Prediction of potential genes in microbial genomes Time: Tue May 17 06:43:29 2011 Seq name: gi|292820718|gb|ACYT02000041.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.18, whole genome shotgun sequence Length of sequence - 5863 bp Number of predicted genes - 8, with homology - 6 Number of transcription units - 7, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 883 1104 ## HMPREF0675_4567 putative ABC transporter-associated repeat protein + Prom 884 - 943 1.5 2 2 Tu 1 . + CDS 1053 - 1229 81 ## + Term 1231 - 1280 3.4 + Prom 1300 - 1359 6.2 3 3 Tu 1 . + CDS 1532 - 1630 162 ## + Term 1659 - 1705 9.3 + Prom 1830 - 1889 2.6 4 4 Op 1 . + CDS 1910 - 2845 667 ## Apar_0548 hypothetical protein 5 4 Op 2 . + CDS 2851 - 3360 575 ## gi|293190965|ref|ZP_06609041.1| conserved hypothetical protein 6 5 Tu 1 . + CDS 3787 - 4254 498 ## COG5483 Uncharacterized conserved protein - Term 4042 - 4088 -0.7 7 6 Tu 1 . - CDS 4206 - 5186 468 ## Tfu_2774 hypothetical protein 8 7 Tu 1 . - CDS 5292 - 5495 86 ## gi|295394693|ref|ZP_06804911.1| conserved hypothetical protein - Prom 5571 - 5630 3.6 Predicted protein(s) >gi|292820718|gb|ACYT02000041.1| GENE 1 1 - 883 1104 294 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0675_4567 NR:ns ## KEGG: HMPREF0675_4567 # Name: not_defined # Def: putative ABC transporter-associated repeat protein # Organism: P.acnes_SK137 # Pathway: not_defined # 12 258 3 246 880 102 34.0 2e-20 MNPTKYRNPGRAAARAFAAMALAATFFLVPGAAHAADEATADTADAVATEESTTADAATT DAATASSEADASTCAVMRTAPAGTTATLDRGHADIFDLTSDASGTLTLRIKEDATGSGVM REPEQTLLAVNKSTLTQIPASVSQATGAPAAAYLLGQSGDNQATVLWPGWDTLGVTAGGY DAARFHISYTGPENGRIYAFTSSFTEGTKAVTNDGSFDLAPEGDDIDQPYAAHKHVNWLF TRAGRYTLTVQASAWTPGNTGAANAVAPARTYTIDVADEASCLAESGSAPSTDQ >gi|292820718|gb|ACYT02000041.1| GENE 2 1053 - 1229 81 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTPRNFGEHHSPTSIAVAMPLAGQGRTYRCFMNLHKPTYKYPKFCDLWASIADTIDEL >gi|292820718|gb|ACYT02000041.1| GENE 3 1532 - 1630 162 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSTIDVMVAQAHIDQLNELADAKRLVKADRH >gi|292820718|gb|ACYT02000041.1| GENE 4 1910 - 2845 667 311 aa, chain + ## HITS:1 COG:no KEGG:Apar_0548 NR:ns ## KEGG: Apar_0548 # Name: not_defined # Def: hypothetical protein # Organism: A.parvulum # Pathway: not_defined # 2 294 5 301 305 87 26.0 4e-16 MGRRVLTVYELAFRQKRKRNPSSFAPADLDGEDLLKIFETWVKNLTTAETHNEDRQTWVS VDDVSLYAPRVLLLDLRVGAYGEAGELVDVDTGEPVGTIADNQAPTGSNRALLFVPETGE RAYFLSEESSRGQAGGRIRDLFRPYFSNYTDKVTMVMTAVTESEVWAEAAELTEVEVRVE GKSVDVADGPHVEVGKVSHIARPQRRKRFPRKLLNGLKDENTLKRIVSVEDLPEDHRVWV TMEHDGRTKKFELGTEGAPAIRELLNEATEPTLETSELVAKCTERVRDLCERRGAAWEAS WSRPARPSRGE >gi|292820718|gb|ACYT02000041.1| GENE 5 2851 - 3360 575 169 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293190965|ref|ZP_06609041.1| ## NR: gi|293190965|ref|ZP_06609041.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 169 15 183 183 321 99.0 1e-86 MGKASLWRVPADHFSTLYDNRIGRTDWWGVAAQALLPLIAGTATWKLGAKIADVGGAVSG ISIVAGLLFTMAVFLFQLRTTLDNDKRLGEDDFALVDECMANTLWAILWGVTLAIYLIVC GAGKWIGYDSCGPTLTGIAVAGTVHFLLVIGMCLKRLRRAYERIAMKRP >gi|292820718|gb|ACYT02000041.1| GENE 6 3787 - 4254 498 155 aa, chain + ## HITS:1 COG:MA3154 KEGG:ns NR:ns ## COG: MA3154 COG5483 # Protein_GI_number: 20091972 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 9 138 151 276 287 60 29.0 2e-09 MTHVVTGWGYEGHSIEDLLNECKRLHAAYVVDIRLNAISRKKGFSKTALSNALAGAGVDY VHLRALGNPKDNRPGFAHPGTPEAERAHKRFNDEVLSTPEADRQLGELAELTRRGNVIIL CFEETPKCCHRHLVIQRLRAQNRQLRSAKTALVEG >gi|292820718|gb|ACYT02000041.1| GENE 7 4206 - 5186 468 326 aa, chain - ## HITS:1 COG:no KEGG:Tfu_2774 NR:ns ## KEGG: Tfu_2774 # Name: not_defined # Def: hypothetical protein # Organism: T.fusca # Pathway: not_defined # 45 313 44 301 303 142 35.0 2e-32 MTRDADADAIQFDPDNFWADQPALPKQAESIDWETEEVREARVKDRLGREIKVLVLVKTM PQLSAQYNDTVCVAGLALDPLRWVRLYPVPFRYLAVENQFTKYALIKVKVRLSDGDPRFE SLKIDATSIRVEDELDSRDGWKLRARYVEPVGEVSLCQLRRNIDDDDNGPSLGLVRPQCG SVKLQLETTPPETDKQAMKRQRILIRQELDLGGAFVDQGLIKLAEPPRLSGWFCFTCEGE PECTGHRLGFIDWEFAALQYNKKSLDIEGLKNLLVAKFETNPTAQGKDLRFFVGNLHDKV KRNAFQILGLYYPSTRAVLAERNCLF >gi|292820718|gb|ACYT02000041.1| GENE 8 5292 - 5495 86 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|295394693|ref|ZP_06804911.1| ## NR: gi|295394693|ref|ZP_06804911.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] # 6 63 46 100 257 66 53.0 5e-10 MASFLERADELVSNCVRRLNKGSAEEASLYWIFYYDYPPSTKVAFNPITGHQLNLAQSDQ HRYDCVL Prediction of potential genes in microbial genomes Time: Tue May 17 06:44:13 2011 Seq name: gi|292820686|gb|ACYT02000042.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.19, whole genome shotgun sequence Length of sequence - 36371 bp Number of predicted genes - 30, with homology - 28 Number of transcription units - 17, operones - 5 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . + CDS 1565 - 2593 1281 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Term 2611 - 2658 15.0 3 2 Tu 1 . + CDS 3186 - 4055 453 ## cur_1919 transposase for insertion sequence - Term 4298 - 4338 -0.6 4 3 Tu 1 . - CDS 4543 - 5172 316 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 5242 - 5301 3.1 5 4 Op 1 25/0.000 - CDS 5318 - 6604 838 ## COG1475 Predicted transcriptional regulators 6 4 Op 2 15/0.000 - CDS 6775 - 7656 812 ## COG1192 ATPases involved in chromosome partitioning - Prom 7788 - 7847 2.0 - Term 7817 - 7852 0.1 7 4 Op 3 3/0.000 - CDS 7942 - 8604 632 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 8 4 Op 4 16/0.000 - CDS 8618 - 9121 786 ## COG1847 Predicted RNA-binding protein 9 4 Op 5 18/0.000 - CDS 9205 - 10545 2130 ## COG0706 Preprotein translocase subunit YidC 10 4 Op 6 . - CDS 10594 - 10959 262 ## COG0759 Uncharacterized conserved protein 11 4 Op 7 . - CDS 10956 - 11309 174 ## Tbis_3595 ribonuclease P protein component 12 4 Op 8 . - CDS 11319 - 11459 202 ## PROTEIN SUPPORTED gi|227494188|ref|ZP_03924504.1| ribosomal protein L34 - Prom 11566 - 11625 2.9 + Prom 11660 - 11719 2.1 13 5 Tu 1 . + CDS 11909 - 13348 2038 ## COG0593 ATPase involved in DNA replication initiation + Prom 13569 - 13628 3.1 14 6 Op 1 18/0.000 + CDS 13758 - 14894 1628 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 15 6 Op 2 5/0.000 + CDS 14896 - 16092 1288 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 16 6 Op 3 . + CDS 16085 - 16873 705 ## COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives 17 6 Op 4 . + CDS 16973 - 17872 1019 ## gi|154508244|ref|ZP_02043886.1| hypothetical protein ACTODO_00738 + Term 18029 - 18065 2.3 18 7 Tu 1 . - CDS 17904 - 18122 118 ## gi|154508245|ref|ZP_02043887.1| hypothetical protein ACTODO_00739 + Prom 18082 - 18141 2.9 19 8 Op 1 24/0.000 + CDS 18180 - 20204 3046 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 20 8 Op 2 . + CDS 20280 - 22883 3722 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 21 9 Tu 1 . + CDS 23011 - 23403 662 ## Sked_00080 hypothetical protein + Term 23418 - 23452 6.1 + Prom 23673 - 23732 1.9 22 10 Tu 1 . + CDS 23790 - 24269 -389 ## gi|293193943|ref|ZP_06609903.1| conserved hypothetical protein + Term 24399 - 24438 -0.2 23 11 Tu 1 . - CDS 24562 - 25518 346 ## SSA_1686 hypothetical protein - Prom 25659 - 25718 79.6 + TRNA 25642 - 25718 90.0 # Ile GAT 0 0 + Prom 25644 - 25703 79.0 24 12 Tu 1 . + CDS 25749 - 25883 175 ## + Term 25980 - 26032 1.5 + TRNA 25895 - 25967 88.7 # Ala TGC 0 0 25 13 Tu 1 . - CDS 26102 - 26596 421 ## COG0415 Deoxyribodipyrimidine photolyase 26 14 Tu 1 . - CDS 27549 - 27662 68 ## gi|154508253|ref|ZP_02043895.1| hypothetical protein ACTODO_00749 - Prom 27682 - 27741 2.4 + Prom 27622 - 27681 2.1 27 15 Tu 1 . + CDS 27885 - 28070 61 ## + Prom 28080 - 28139 5.1 28 16 Tu 1 . + CDS 28189 - 34707 11038 ## COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases + Term 34759 - 34794 8.1 - Term 35230 - 35265 9.5 29 17 Op 1 . - CDS 35293 - 35934 769 ## COG0671 Membrane-associated phospholipid phosphatase 30 17 Op 2 . - CDS 35955 - 36305 235 ## COG3012 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|292820686|gb|ACYT02000042.1| GENE 1 213 - 1541 1781 442 aa, chain + ## HITS:1 COG:PAB2227 KEGG:ns NR:ns ## COG: PAB2227 COG1167 # Protein_GI_number: 14520410 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus abyssi # 31 421 16 407 410 312 39.0 1e-84 MTQPSTNGGTPASSGRTPAQGNRLDPWYDVYADRAHNLRASEIRALFSVVSRPEVVSLAG GMPNLKDLPLDKLAASAEKLIRNHGAQAMQYGSGQGWEVLRERITEVMGYDGIVGADPDD VVVTTGSQQALDLVTELFVNPGDVILAEAPSYVGALGVFRARQADVVHVAMDEHGIIPEA LVETIRDVRASGRTIKFIYIIPNYHNPAGVTLSAERRPIIAEICLREHVLIVEDNPYGLL GFHNDPLPAIASYSPEGVVYLGSFSKMFAPGFRIGWAYAPHAIRAKLVLALESAILCPSM VGQMAIADYLGNYDWYGQVKSFRSMYAERCRAMLTSLEEYMPSCTWTVPDGGFYTWVTLP EGLDAKAMLPRAVRAQVAYVSGTAFFYDGSGSNHLRLSFCYPTPEDIREGVRRLSTVVNT EKEIVDMFGTASGDEAGAGSDR >gi|292820686|gb|ACYT02000042.1| GENE 2 1565 - 2593 1281 342 aa, chain + ## HITS:1 COG:aq_521 KEGG:ns NR:ns ## COG: aq_521 COG1181 # Protein_GI_number: 15605989 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Aquifex aeolicus # 4 292 2 275 291 180 34.0 4e-45 MATKVLIIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWP LVHGSIGEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQA IFRQLGASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVDAFAYGQRLMV EQRIDGRDVAVSVVDLWDGPVALPPVEVSTDRGRYDYDARYTTDETEYFVPARLSDELLA DLQAAAVEAHTTLGLRDLSRMDFVVDDEGTCWFIDANVAPGMTDTSLLPQAADALEDSSF AQLCADIVDFVAGGRDVHSVANAFDEQGAGAIIAEDAEAIKE >gi|292820686|gb|ACYT02000042.1| GENE 3 3186 - 4055 453 289 aa, chain + ## HITS:1 COG:no KEGG:cur_1919 NR:ns ## KEGG: cur_1919 # Name: tnp7109-60 # Def: transposase for insertion sequence # Organism: C.urealyticum # Pathway: not_defined # 4 263 110 366 392 176 39.0 1e-42 MHLSGGWVLLIARDREHVLEWQWAANESAQAYTALLERLAPADVVTTDGAAGALAAIAHL WPATRVQRCLVHVHRDIIRDLTMHPRTEPARALLALSRRLTSITSVDQASAWLTMLHDFG HTFREWMSQRTFAAQDPAWASKTGKTWWYTHERTRRAYRRLARLARQGVLFTYLTNPDGT PADPPACATTNHVESINAVVRELLHAHRGASAYHQAVIAEWALLLRTPQPPTPTEVLTQR EHDGRPTPRRIPTPKHPNHTDQKRHGIPEGTPTPEEGLWPRKGWAGRAH >gi|292820686|gb|ACYT02000042.1| GENE 4 4543 - 5172 316 209 aa, chain - ## HITS:1 COG:Cgl0120 KEGG:ns NR:ns ## COG: Cgl0120 COG1011 # Protein_GI_number: 19551370 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Corynebacterium glutamicum # 7 204 4 201 201 83 31.0 3e-16 MNAQGSSRTVLFDVGGVLVDAHPDPHAIAELFGDGSRCLTALVDQAMWTHRGEYDAGMSD REFWDRIAGDCGQPEPSSALLKELVALDVSRMATVDEETLDLVRRLRRQAVRLGILSNAP YPIAKAIRRSEWGSLFDFFAFSCDYGVCKPSRGIYRDVLVRLNVPHEDVVFIDDRRVNVR AAELLGVQGIVWQGVEDAETRLKELGVLR >gi|292820686|gb|ACYT02000042.1| GENE 5 5318 - 6604 838 428 aa, chain - ## HITS:1 COG:ML2706 KEGG:ns NR:ns ## COG: ML2706 COG1475 # Protein_GI_number: 15828464 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium leprae # 151 426 59 330 335 246 51.0 7e-65 MADAASKSEGRKGARRHTGLGRGLGALIPQASEQAPHNAPSAPSRPLDVFFPEGSSGGKR GGSAKDLLQPKRGTASSKKKRPTMPSVDAAGGRRGAGFRSGLGSGINGSDSRQKAARVPA AGSSANEAEKREEQNVSRETSVEHELLPVPGASFAEIAIDQIVPNTKQPREVFDEDDLKE LSASIKEVGVLQPVVVRSIPAKGRSEKLTEFLADKPEARFELIMGERRLRASELAGETTI PAIIRETEDGDLLRDALLENLHRAQLNPLEEASAYQQLMADFGATQEELAKRIARSRPQI ANTLRLLKLPPSVQKKVAAQVITAGHARALLSLSTHEEMERLAERIVAEGLSVRTTEEIV RLGKAKATPRPRARQQRPLSQLGESVVSALSDAYDTRVTITEGRKKGRIVIEFAGCEDLQ RIADLILR >gi|292820686|gb|ACYT02000042.1| GENE 6 6775 - 7656 812 293 aa, chain - ## HITS:1 COG:Cgl3035 KEGG:ns NR:ns ## COG: Cgl3035 COG1192 # Protein_GI_number: 19554285 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Corynebacterium glutamicum # 26 287 28 289 307 285 57.0 6e-77 MSINNTPLSNQIERNMRDLAMLERATFPRPQHTRIIAVANQKGGVGKTTSAVNLAAGLAM GGLSVLVVDADAQGNASSALGVPHPAGTPSTYDVIIGGASVADVVQPCPDIDGIVVCPAT IDLSGAEIELVDVERREYRLREALREYVSEHVDIDIVLIDCPPSLGLVTLNVMVAADEVM IPIQAEYYALEGLSQLWNTIERIGVDLNPGLRVSGMLLTMADKRTKLSEEVESEVRSHFP DHTFETVIPRSVRISEAPSYGQTVVTYDPRNVGAIAYRKAALELCQRVAASEE >gi|292820686|gb|ACYT02000042.1| GENE 7 7942 - 8604 632 220 aa, chain - ## HITS:1 COG:Cgl3036 KEGG:ns NR:ns ## COG: Cgl3036 COG0357 # Protein_GI_number: 19554286 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Corynebacterium glutamicum # 19 192 6 180 209 126 40.0 3e-29 MGRGRQVGDPFVPEEPTQAVCEFFGPAFAEVAEYARMLEEEGEIRGLLGPRDMERIWSRH IVNSAAVLDFMPRKDGRQVLDVGSGSGLPGIVIAACRPELDVHLAEPMARRVEWLMDVVE DLGLDNVTIHQARAEELRGKGKADVVTARAVANMSKLVRMTSKLIAPGGSLVALKGRRAP IEVDEASAELRRHHLRAEIHEVPSIMEDESTYVVVCNRIK >gi|292820686|gb|ACYT02000042.1| GENE 8 8618 - 9121 786 167 aa, chain - ## HITS:1 COG:MT4039 KEGG:ns NR:ns ## COG: MT4039 COG1847 # Protein_GI_number: 15843554 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Mycobacterium tuberculosis CDC1551 # 2 160 28 185 187 114 59.0 1e-25 MSDDNADKLTRLEEEGEIAADYLEELLDIADLDGDIEIDVENGRASVEIVADDPDALDRL VGDDGEVLDALQELTRLAVQTETGERSRLMLDIAGFRAERKEELQDITREAIARVRATGE AVKLDAMNPFERKVCHDVVADEGLTSESEGAEPHRRVVILPEDTDGE >gi|292820686|gb|ACYT02000042.1| GENE 9 9205 - 10545 2130 446 aa, chain - ## HITS:1 COG:ML2710 KEGG:ns NR:ns ## COG: ML2710 COG0706 # Protein_GI_number: 15828468 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Mycobacterium leprae # 2 266 11 278 380 124 27.0 4e-28 MFDAILHPFAWAISYVWVWIHDLLVLLGMSSGSGMAWVLSIVLLTILVRIAIIPLFLKQI RSSRAMQAIQPEMRKIQEKYKGKKDQVSRQKMMEETQALQRKHKVSPFASCLPMLVQMPV LFGMYRAIIAVSSISNGTYTYRGEATDHLGPLTESVSTEIVNSTVLGVPLSHTLRESWGQ PTIVAVFIAAIVLMVVLQFVSMRLSFSRNMPDMGDNPMAQSQRSMMYVMPLMFIFSGAFF QMGVVVYTVTASFWALAQSLWTIKVMPTPGSPAYADLLASREAAYQEWAKPYFQNYDRER AALGVAGSDPRIDELNERTLAELRSKAKKQRVASDFPASMSAGEIITVYRNLATQKWTTL PDEQWMHGLTLAVEKRLAKQEASAHRAELQKQVRDRRALERESAKASSKDASEASESTSG HGSLSAEEIERRRIERRKARRRGNKR >gi|292820686|gb|ACYT02000042.1| GENE 10 10594 - 10959 262 121 aa, chain - ## HITS:1 COG:PA2045 KEGG:ns NR:ns ## COG: PA2045 COG0759 # Protein_GI_number: 15597241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 8 78 1 71 86 82 57.0 3e-16 MNMAGRALRALMSAPIVAYQRYISPALGPRCRYAPSCSTYALQAIRVHGPIKGLILGTWR LLRCNPWSHGGVDHVPERGRWKPDPWIPPEDWAGHDNWVRPDPMGLDPEHDLTEPDTASG L >gi|292820686|gb|ACYT02000042.1| GENE 11 10956 - 11309 174 117 aa, chain - ## HITS:1 COG:no KEGG:Tbis_3595 NR:ns ## KEGG: Tbis_3595 # Name: not_defined # Def: ribonuclease P protein component # Organism: T.bispora # Pathway: not_defined # 1 104 1 103 124 73 50.0 2e-12 MLPRAHRMVDPADFTAAIRQGTRAGDPLVVVHVRADEERNSRLVGFVVPKREIKRANGRN RVKRQLRHLMRERIADLPKGARVVVRASSKALGVPSKELGEHLDRVMARAWRKWDAR >gi|292820686|gb|ACYT02000042.1| GENE 12 11319 - 11459 202 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494188|ref|ZP_03924504.1| ribosomal protein L34 [Actinomyces coleocanis DSM 15436] # 3 46 2 45 45 82 90 4e-15 MTTKRTFQPNNRRRSKTHGFRLRMSTRAGRAILAARRRKGRAKLSA >gi|292820686|gb|ACYT02000042.1| GENE 13 11909 - 13348 2038 479 aa, chain + ## HITS:1 COG:MT0001 KEGG:ns NR:ns ## COG: MT0001 COG0593 # Protein_GI_number: 15839373 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Mycobacterium tuberculosis CDC1551 # 15 477 33 506 507 414 50.0 1e-115 MESDSLTRAWAAALDAVPTDELGPVATSMLRSARPLGDIEGTILLAVPNDFTKQWIEDKA QSKLTTALSVHLGRTVRIAITVDPTLEVVTEEEEEEETTPAAPTDAPASSTDEDEEHHSP ALVTAPTDSGPTHLNPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGK THLLQAIGHNALSMMPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILL IDDIQFIGDKEQTVEGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVD VQPPDLETRIAILHKKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQER IDLNLAQMMLKDFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMY LCRELTDLSLPKIGQAFGRDHTTVMHANKKISKLMKEKRETFNHVSELTNRIKQKARES >gi|292820686|gb|ACYT02000042.1| GENE 14 13758 - 14894 1628 378 aa, chain + ## HITS:1 COG:ML0002 KEGG:ns NR:ns ## COG: ML0002 COG0592 # Protein_GI_number: 15826867 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Mycobacterium leprae # 1 376 13 397 399 299 42.0 7e-81 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT ADEAGEVLVSGRLLADISKSLPSKPVSVELDGQKVNLVCGSSHFTLAVMPLDEYPLLPAQ PTGVGAIDSSTLSQAVTQVSIAASRDDTLPLLTGVRIEINGPAITLLATDRYRLAMRELD WEPTDTSIEEVALVKARILQDVAKSMTSGAKVEVGLSGESQPGASSLIGFTAQGRRTTST LMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVAERKTSVRLAFTEGQLVLEAGQ GDNAQASEAIEATLNGDDISTAFNPQFLIDGLQVLDTDYVRFGFTHPTKPAVITGQKKAD EGEVTQFRYLLMPIRFGI >gi|292820686|gb|ACYT02000042.1| GENE 15 14896 - 16092 1288 398 aa, chain + ## HITS:1 COG:ML0003 KEGG:ns NR:ns ## COG: ML0003 COG1195 # Protein_GI_number: 15826868 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Mycobacterium leprae # 1 391 1 380 385 297 47.0 2e-80 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL VRIPIDEAEAAPGGAVIRARVVIFGREQVIELEIVRGKANRARVNRAQVKPREILGVVRT VVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASLRR GQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDASV DRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLVGAHRDDLTLSLGAMP VKGYASHGESWSVALALRLGAFELLSDDGDTPILILDDVFAELDSSRREGLAALASKAEQ IIVTCAVAGDLPDSLDHHALHVRLDPERGTVIDEADDE >gi|292820686|gb|ACYT02000042.1| GENE 16 16085 - 16873 705 262 aa, chain + ## HITS:1 COG:Cgl0004 KEGG:ns NR:ns ## COG: Cgl0004 COG5512 # Protein_GI_number: 19551254 # Func_class: R General function prediction only # Function: Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives # Organism: Corynebacterium glutamicum # 134 262 49 178 178 105 43.0 8e-23 MSEREDMAADELSGAVAPGDEADADEFVVRALERAQSVARTHGYTRSTLPSWGLDETRPR RSLDGSSEYAAIETDGFGRLTDEENVSARAAARAAAYRHANGIEAPASSTEDDPEGDLAA LRQALEGTGASWSRAPGLAAMRPRYRRANSLGAILARTIKTREWDTPTKMGSIMAKWRDI VGPQVAEHARIETFEGHRLVVRTDSTAWAKQLQLLLPTIERRIAEEVGSGVVEQVIIRGP VAPSWRKGPYVVRGRGPRADYG >gi|292820686|gb|ACYT02000042.1| GENE 17 16973 - 17872 1019 299 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508244|ref|ZP_02043886.1| ## NR: gi|154508244|ref|ZP_02043886.1| hypothetical protein ACTODO_00738 [Actinomyces odontolyticus ATCC 17982] # 1 299 1 299 299 333 88.0 1e-89 MSNPFARNEGSTPGFGQQGGYPGGAQGGYQQGYGQQRGYAPGQYQGGFPQGAPQQAYGQW NPQGGYGGQGGFPQGAPQQGGKSKTPLIIGIIAAVVVIAIIVGVVIWAMSGSDSDDSSNT SAPAPGTSAPANPGNGSANPANPAPGNPQAPNNTNPSAAPTQGNGTGANGMLSMVAQDTN CLYEMTDISYGPKADNNEQTLKYTFNVTNKGNATESCVLLPMPYQNNEQLHIPNFFQTPE PDDFSYVPTAGDLPAGQTQQVVVYRVIENKRDPIEFRDPLWTILDYQGKQYQTWTWQPK >gi|292820686|gb|ACYT02000042.1| GENE 18 17904 - 18122 118 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508245|ref|ZP_02043887.1| ## NR: gi|154508245|ref|ZP_02043887.1| hypothetical protein ACTODO_00739 [Actinomyces odontolyticus ATCC 17982] # 1 72 1 72 72 119 90.0 5e-26 MALVPGINRIGGLLYKLRDSNEKSTVISHMPIVVAAGTQGAALPAGRAAPSLVCQQRRFA RQEAPYDADTEL >gi|292820686|gb|ACYT02000042.1| GENE 19 18180 - 20204 3046 674 aa, chain + ## HITS:1 COG:Rv0005 KEGG:ns NR:ns ## COG: Rv0005 COG0187 # Protein_GI_number: 15607147 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Mycobacterium tuberculosis H37Rv # 1 674 40 714 714 770 59.0 0 MADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEAL AGYADHIEVTIQEDGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVS GGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLKRGEETDETGTTQVFYP DPEIFETVEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGGEEALDKKTKG HRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSSSV HTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVISIK LTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWLDAHPADAKAIINKGQAAQAARVAAR KAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILPI RGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHIA TLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDELLAAGSAANRRL PKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADADETFTILMGDDVDRRRT FIQRNATDVRFLDI >gi|292820686|gb|ACYT02000042.1| GENE 20 20280 - 22883 3722 867 aa, chain + ## HITS:1 COG:MT0006 KEGG:ns NR:ns ## COG: MT0006 COG0188 # Protein_GI_number: 15839378 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Mycobacterium tuberculosis CDC1551 # 16 835 13 829 838 988 63.0 0 MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH KGIEDAYRTGRGSITQRAVVNVEEIQGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGG IADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSI DGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEAR AGLMELLDVDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQRAI ISAELGEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQK RGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGGRDAKGQHVAN LLAFQPDEHIAQVLAIRTYEDADFLVLSTKRGLVKKTPLSLYNSPRSGGIIAINLREDED GKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRGMKFRGDDELLS MEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGDLVGALVVRPDED VMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSGDEDETDESENT ESMEGTDAPADEASAPAGGDDTADTDK >gi|292820686|gb|ACYT02000042.1| GENE 21 23011 - 23403 662 130 aa, chain + ## HITS:1 COG:no KEGG:Sked_00080 NR:ns ## KEGG: Sked_00080 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 12 130 156 275 275 127 54.0 2e-28 MSDHVSSTRSDAPRRVDLAIARIDAWTVMKVAFLLSVALGIAMVVATIVLWLMVDAMHVF SQLEEFLKTMGAGRYADLLDYTRLPRVISYATIVAVINVVLLTALSTLGAMLYNVVASLV GGIKVSLMDE >gi|292820686|gb|ACYT02000042.1| GENE 22 23790 - 24269 -389 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193943|ref|ZP_06609903.1| ## NR: gi|293193943|ref|ZP_06609903.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 13 129 6 125 130 98 56.0 1e-19 MKLRVGVADPSRETGVAFAGAGRASTETGVAFAGEKWVFLVRFAVAVVLSVSTVAVQGRA VVMGVSCWSVSAVAVVSSSPRRCVRCAEKFALRARNTPNLTFLRLLGELCHGLSGGEGVP GECCRACRPRHHSLRCLRHPPHRPRWGFCSMRSWLSACQ >gi|292820686|gb|ACYT02000042.1| GENE 23 24562 - 25518 346 318 aa, chain - ## HITS:1 COG:no KEGG:SSA_1686 NR:ns ## KEGG: SSA_1686 # Name: not_defined # Def: hypothetical protein # Organism: S.sanguinis # Pathway: not_defined # 23 260 25 265 404 108 32.0 3e-22 MTTVIEHARDARTPLRADISPADALVLSCLVYVDFHALPGPRSPRGCLLREVAQASSIPS LYRYSLASHADRPLLESAGASARFGGLRVRDAVTRLTSQPLAQFGAVTFVDEAGATYVVL RGTDASAVGWAEDARFGLDFPTDSQLWAANYLAFAAARANGPLTVVGHSKGANLALYAAA ATTPPALKHVYAFDPVGFPASVIDDGFFLGIDGRMRVYVTAGSWVSPLLPLPTPATVVTS SWPGPLSHNPYAWRSQGSTLAPDHRRQSRSGLILRDILAAVLRARPMRIDTNYQHRHSRW TPGPFHTHVGPFPRTLTL >gi|292820686|gb|ACYT02000042.1| GENE 24 25749 - 25883 175 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKWVTCCVAVGSVVAVGIAVRQILVDLSDNADLWKSVTDAVED >gi|292820686|gb|ACYT02000042.1| GENE 25 26102 - 26596 421 164 aa, chain - ## HITS:1 COG:Cgl0613 KEGG:ns NR:ns ## COG: Cgl0613 COG0415 # Protein_GI_number: 19551863 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Corynebacterium glutamicum # 19 152 348 482 482 167 62.0 8e-42 MRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLWQTGWMHNRVRMVAASLLTKNML QPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAPYFRIFNPDLQRTRFDPRSRYVR RWIPEGLARPVVSVVDLAESRREALAAYEQVRGLSGSLAKPQRG >gi|292820686|gb|ACYT02000042.1| GENE 26 27549 - 27662 68 37 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508253|ref|ZP_02043895.1| ## NR: gi|154508253|ref|ZP_02043895.1| hypothetical protein ACTODO_00749 [Actinomyces odontolyticus ATCC 17982] # 1 37 1 37 37 62 91.0 8e-09 MTTALYARVWVDHFLDREQQPMPLTAFADTIAGQFLH >gi|292820686|gb|ACYT02000042.1| GENE 27 27885 - 28070 61 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDHLVIGGESGRPVTTIVQSGTSDAVKHRIYPQHYAQLCINRMDGCLSVHHHCLKTDLH R >gi|292820686|gb|ACYT02000042.1| GENE 28 28189 - 34707 11038 2172 aa, chain + ## HITS:1 COG:MA0385 KEGG:ns NR:ns ## COG: MA0385 COG1429 # Protein_GI_number: 20089282 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobN and related Mg-chelatases # Organism: Methanosarcina acetivorans str.C2A # 1732 2038 206 506 1922 66 22.0 8e-10 MWSKASKPAQLLAMLVTTALVMLGVTTLPTYAAAPRLKLAITPDETSYLSGVEQRYVVEF ACASTTEDCVDSVVTITLPHTVTPAGDPNPDSAPYGVNATATAGKKVVTPTIKAPTANAD GLVTYNLGTVAAGSSFQTVLTFTALRGVTPGGSTVTPVATFTSGESKETSQATVTIKSEP TPLLSKTGPVASPKNVDVTYQITPKYDTNVDGLNGKSNMTDVVITDPLPKCATYVSSSAS GNTKTITAATVESSYDAATHTVTWNIGDVNPAFMNLVLSVTVHYDDTCTDDTVTNTAKLT GKEMNNETNVVTADASFTHRFDSEIRYGGGFNKRAMSQFERGKQGNWLYSYSNNSNVPVV MEYTDYLTCGLVSPTDGSKDCDKPLMSVKTIDTQTTTPIEITYWTNKGNTGTQTVYHGKA FDFSSFAADEYLTVFHYKQTIPAGESSILNVAGPVGAGTPTTEDGTTYVEADTNSAAWKA GKSDQYVRVQNCVTDWSMKSLDGSRSIQIPADDYCDILTLGTALPKYYNVKSTIKGNLAF PGSEVTFSVTANNTSTVVDSQPVISDLLPCGMTFVEDSVTGGPAGKEKTVTVRDVTDATG CTRQLVQVTWPGYQTKGGTTIQLRGKVGPSMSAGTHKNEAYISAAEPEYALTSKSTTICF YGSTDDTYDVNSDGSTADQVCPVSSTFTVSEQAGADVVLEGLGSVEGSTYKKYVDGVSMI RQGEDGKYRITPTNSGNADLSDMTVYGILPHVGDTSIQGSDPRGSEWAPILTGPLQVGAG SGIDPSQVTIEYSTSYNPCRGEVMKQGDAMAAGPTGCDNNWTTTPASWADVKSYRIYING KATPIKAGASIPIIAPIKAPDNATGIAYESVAIAATQASNNRAILPAEPIKVAMTLGLDV ALNKTVVSDASNLKPGDQVTYRIDAGNIGQGKAPDLKVKEAFPAGTTFVSAEMHKCASGY TTGLPQECKGTDEAGTFDGTTWTIGDMLAGEYASLFVTVTLNADTDGKTLNNTAAFVNPP EYDLVPGNNSSSASITVKHRLSGKVYYDANESSSSDNGEDPFKDITIELVGADGNVVATT KTDADGNYSFTGLDAGTYTVKVTKAGDIAELTQTEDPDGTKDNASGVITLNADNPVRENV NFGYIKKHAISGNVYLDQNRDKTKNTADIDLSGITVKLLDKDGNVVGTTKTDGDGNYSFT DLNDGTYTVQVDKTGPLADKEQTEDPSGQADSRSQAITFTRTDPDVTNVNFGYAEDYTIS GTVYYDKDRSETLNNSEPGFDGITVTLLGEDGAVVATTTTKADGTYSFSKLPAGKYTVKA EPSDLLKKLEQTEDPDGTKDHTSGVIQVGHDNPSVKNVNFGYATNYTIKGTVYRDADRSE SLEDGEKLYQGVTVDLLDTDGNVVATTTTDAKGAYAFTNLEEGTYKVRVHKEGPIADLVQ SEDPDATKDNTSGDITLELNDPIKKNVNFGYISNNSISGTVYRDDNRSNSLNGGEAGYPE QTVQLLDKDGKVIATTKTDANGNYSFDNLHDGTYSVKVVKDGALTDLEQTEDPDGTKDSA SEPIVLNEDNPTKKNVNFGYVPDYFIKGTIYRDGNRSGTLDTDEKLYEGVTANLVDVDGN VVATTTTDEKGNYSFDKLPVGTYSVKVVQDGPIAPLEQTGDPDATKDNSSEPITLNNDNP SKTDVNFGYVNNNSLSGTVYRDDSRNGDHDGTEPGYSGVTVQLLDKDGNVVGTTTTDKDG KYSFEHLPDGTYSVKVVKDGELADTDQTEDPDANKDNASEPVTLGEDNPTKDNIDFGYVP DYSIHGLVYRDGDRDETHGATEKGYANQTVELRDKDGKVVATTTTDENGAYSFSKLPAGD YTVKVVKDGALTDLDQTEDPDSTKDSTSGIISLSNDHRTETDVNFGYIANNSINGTIYRD GDRDGKKGDTEGRYSGVTVQLLDKDGKVTATTMTDKDGTYSFEHLPDGDYSVKVVKDGAL TDTDQTGDPDNKLDNASEPITLDEKNPTKGDVDFGYVPNNTIKGTVYRDSDKSGSYTDGE ETFSGVTVDLLDKDGKVVATTTTTDKDGKYSFSKLPAGTYRVKVYPDGDLADLDQTEDPD GIADSMSGEITIGFDNQKVTGVNFGYVAPDVPVTKPKQGLARTGFDGLIGGAGLGAAVVG GMFLWMRRLRQD >gi|292820686|gb|ACYT02000042.1| GENE 29 35293 - 35934 769 213 aa, chain - ## HITS:1 COG:all7623 KEGG:ns NR:ns ## COG: all7623 COG0671 # Protein_GI_number: 17158759 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Nostoc sp. PCC 7120 # 48 198 68 215 232 73 33.0 2e-13 MIARRLLTPPVIIGFLLVAAVAVAGGFITSPLSIDTTVWSDFVASRTPAINSFMTGASWL FDPKRAVVVALAVAVAVWWFIKKVMNALYILCSVVFSAANSFIIKHVYERPRPEEALRLI TEDGYSFPSGHATSVTALFVSLVLVLTTTRVGRRLRYLLWAAALTFIVFICVTRLYLGVH WVTDVIGGFSVGLGSSMILAPFMIGPNALKLFR >gi|292820686|gb|ACYT02000042.1| GENE 30 35955 - 36305 235 116 aa, chain - ## HITS:1 COG:Cgl1403 KEGG:ns NR:ns ## COG: Cgl1403 COG3012 # Protein_GI_number: 19552653 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 3 116 18 129 129 85 45.0 2e-17 MLAQCCRRYLDGEVAPTAEALMRSRYTAFALRDEDYLFRTWHPRTRPAPPYWVEGTQWTG LQILGAEAGGPSDEEGTVTFVASWRDTSTGESGQMREHSRFSRRAGRWMYEYGAND Prediction of potential genes in microbial genomes Time: Tue May 17 06:45:13 2011 Seq name: gi|292820681|gb|ACYT02000043.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.20, whole genome shotgun sequence Length of sequence - 5650 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 2 - 1027 713 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 2 1 Op 2 . - CDS 1046 - 4105 3716 ## COG0728 Uncharacterized membrane protein, putative virulence factor 3 1 Op 3 . - CDS 4102 - 5649 1648 ## Arch_1808 hypothetical protein Predicted protein(s) >gi|292820681|gb|ACYT02000043.1| GENE 1 2 - 1027 713 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 37 341 1 306 306 279 48 4e-75 MSFVTIPGLVKAESTDTTAETAEVQIPSAEVPEGAIVHDVVIVGSGPAGYTAAVYTARAG LAPIVLAGQLAAGGALMNTTEVENFPGFPEGIQGPELMDNMRDQAEKFGADVRYEDVVAV NLEGDVKAVATEDEVFYARAVILATGSEYRHMNVPGEDEFSGRGVSYCATCDGFFFKDRR LAVIGGGDSAMEEATFLTNFASEVVVVHRRDALRASRVMAERALNNPKISFEWNATVDEV LGDEAVTGLRLASTVDGSTREIAVDGVFVAIGHLPRTGFLRGQVALDEAGYITVDEPSTR TSVAGVFACGDAVDHTYRQAITAAGSGCRAALDAERWLASLG >gi|292820681|gb|ACYT02000043.1| GENE 2 1046 - 4105 3716 1019 aa, chain - ## HITS:1 COG:Cgl3028_1 KEGG:ns NR:ns ## COG: Cgl3028_1 COG0728 # Protein_GI_number: 19554278 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, putative virulence factor # Organism: Corynebacterium glutamicum # 4 426 74 480 640 171 32.0 5e-42 MSSNTPRRSILRASALMASGTMVSRILGFVRNAMLIAAVGATAGGVGAAFQTANTLPNTV FNLLASGIFDAVLVPQIVGAIKRRNDGDIYVNRLLTLAGTLLFLVTFATMVLAPVLVMIT AAGYTEDIRNLAILFALLCLPQLFFYGLYNLLGELLNAREIFGPYMWAPVVNNVVGIVGL GAFLAIWGGAPDGGIPAGDLTGAQFWVLAGSATLGVICQALCLLWPMRRAGVSFKPDFHF RGTSFGSMPRVAGWTFATLSVSQVGVLSTNNLAAMADGFIGRNGTQGGVVGILAYSTAFM IFMVPQSLITVSLTTAIFTRMAGAVADSDDRAVADNYHLGVRTITSLTLVAAAMLIAGSV PMMEIAMAAKGGDPEAVTGYALVLASLMPGVASTGMVLMSQRVFFAYEDVKPVFLMGIGP TILQVIVGWSMYALTGARWWVVAAALGETVCRLTQGIIAVVWVSRENRYIDRAGLLRSYA SYLAAAIVAGIVGFGLLWLMGIHTEISSTLGRMALAGVKLSLVSALTGLVYLLVLRFAAP GESAVMMRPLLTRLRVPGAVVNILAASSTPTPAPAEIMTGHTPDETEEPMAPTPERSGDD EKLPSFDEVLSTSPIPAPPTPPAAPAADEAKELADNAAEELVDMPPAPAPAEVPTLGPAT QAPVENPLVAEAVAVPIVDDIAEATEAAQAQAIPESLAEYGIEPVTDEVEAAQVEAPAFP LAPPPPAPAASGYERDAEVNPEDYPHPAPLMDGPSTHQIPRVQAPEAVPAPPVEDATEVM DPVPPMPAAPVQDAPASSNEEGSSKHSGTLVDPTKPALIFGVVLVLFGAIWGPWMATRPV TDLDLTQSLRAGISQQQSNEEPSPALTTTPPPAPTTTPVISSVQVLSWNNDDGDHPDRAI NMIDSNPATSWSSRWFDNNQFRDETSVTIVVKLQQKATVSSVTLTMDPATSGGEVVVRNV TDPANPRGGTELAMSALSPTTTIQLPTAVETDSIALQFRSMPKGQDGRNWAWISELTVQ >gi|292820681|gb|ACYT02000043.1| GENE 3 4102 - 5649 1648 515 aa, chain - ## HITS:1 COG:no KEGG:Arch_1808 NR:ns ## KEGG: Arch_1808 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 71 515 215 660 663 107 26.0 1e-21 APTATDPAQRARDLQSEAFVAALLSNATEIIALPEGDADLGALSLSGNTGFWDRASRSMA DFPDTLRKAGWVAPANSPASPSPSASATPSPSGTPEATPTPSASTSTAGQSATTTFSPDS GPSILRNVAWPADTTFGTSFLSGFSSSDQITIAPVGALTPAEDVPFTSYARVNVNPATGE TSTDGTGARSLAQQSDIAALLSWNASGGDELDAEQALTAITAIITRERPASSRTIFAAAQ RGTVINERLTSRTKALFSPRWVSAMSFSEMAASEPTDVDRQTVGAGVLATDTETAISAMA SSLTMLTPLANATDDADAVYASVTPQILPALSAQLTPSEQLDAATAVTSQVTTMLSAVTV EPSSAINLINKSANFPVLVRNNLPWPVRVDVTLVPDDPRLRAIPAQSQTLAAQGATTVEV PVRAIGSGDIEVTYKVTTPNGVVLDDSQTVTVRMRAGWEDAITAVIASLFGLLFLAGITR SLRKRAARKAQAASGDADTTDITTETETATTKETP Prediction of potential genes in microbial genomes Time: Tue May 17 06:45:26 2011 Seq name: gi|292820655|gb|ACYT02000044.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.2, whole genome shotgun sequence Length of sequence - 19179 bp Number of predicted genes - 19, with homology - 16 Number of transcription units - 12, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1270 1615 ## COG0668 Small-conductance mechanosensitive channel + TRNA 1434 - 1509 69.7 # Glu TTC 0 0 + TRNA 1559 - 1635 88.0 # Asp GTC 0 0 + TRNA 1660 - 1735 79.1 # Phe GAA 0 0 2 2 Tu 1 . - CDS 1729 - 1926 151 ## 3 3 Tu 1 . + CDS 1951 - 2043 89 ## 4 4 Tu 1 . - CDS 2097 - 2411 110 ## gi|293191105|ref|ZP_06609080.1| hypothetical protein HMPREF0970_01418 5 5 Op 1 . - CDS 2517 - 2747 243 ## gi|293191106|ref|ZP_06609081.1| hypothetical protein HMPREF0970_01419 6 5 Op 2 . - CDS 2744 - 2926 165 ## 7 6 Tu 1 . + CDS 4428 - 5117 -278 ## ECB_02621 hypothetical protein 8 7 Tu 1 . + CDS 5419 - 5916 -433 ## ECSE_3008 hypothetical protein 9 8 Tu 1 . + CDS 6887 - 7360 -574 ## ECSE_3007 hypothetical protein 10 9 Tu 1 . + CDS 7665 - 8117 -328 ## Mhun_1373 hypothetical protein 11 10 Op 1 . - CDS 8775 - 9116 172 ## Namu_3048 CRISPR-associated protein Cas2 12 10 Op 2 . - CDS 9176 - 10138 510 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 13 10 Op 3 . - CDS 10135 - 10884 177 ## Tcur_2684 CRISPR-associated protein, CSE3 family 14 10 Op 4 . - CDS 10884 - 11363 290 ## Tcur_2683 CRISPR-associated protein Cas5 family 15 11 Op 1 . - CDS 11609 - 12733 1149 ## Namu_3052 CRISPR-associated protein, CSE4 family 16 11 Op 2 . - CDS 12779 - 13429 272 ## Caci_3908 CRISPR-associated protein, CSE2 family 17 11 Op 3 . - CDS 13426 - 15096 864 ## Namu_3054 CRISPR-associated protein, CSE1 family 18 11 Op 4 . - CDS 15093 - 17912 1285 ## COG1203 Predicted helicases + Prom 18193 - 18252 4.1 19 12 Tu 1 . + CDS 18481 - 19177 787 ## gi|293191128|ref|ZP_06609103.1| conserved hypothetical protein Predicted protein(s) >gi|292820655|gb|ACYT02000044.1| GENE 1 1 - 1270 1615 423 aa, chain - ## HITS:1 COG:MA1724 KEGG:ns NR:ns ## COG: MA1724 COG0668 # Protein_GI_number: 20090576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Methanosarcina acetivorans str.C2A # 161 305 81 223 379 79 29.0 1e-14 MTMTPALGALAQVSDALTRAAADAQSGAEAAVTTTIDLTLLILGPIIGAFVGVVVSVLLS ALLRKALAKAATASSILARVRRPGHFTFAAWGAWAGLGIALVNPHLSDWNGTSITTFLMH VLLIVALACLTWMAYAAAWVFEDAAKARQDSDQGRSRRFETQAQVLRRLTQSIVVVVGVV AIISTFEVARQAMTTVLASAGVISVIFGLAAQQTLGNVFAGLQLAFTDAIRVGDVVVAGE KKETGSVEEITLSYVVVRIWDERRLIIPSRYFTQTPFENWTRRAAAQLGTVELKLDWSAP MTLIRAKVEQLLTATDLWDGRTWGVQITDSDEYTVTVRVLVSAKNSGHLSDLRAYMREQL ISWIVTEEPWARPAQRIEPRQTVTVEQDMSRERIARLAAELAGISGTNEAVAATGTSASH AGT >gi|292820655|gb|ACYT02000044.1| GENE 2 1729 - 1926 151 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIFCYFWGWADSCCGGIACEICLVARVGRACAELSGAHSSNRPLSQAKLMGKTKTPKQKL RGLAS >gi|292820655|gb|ACYT02000044.1| GENE 3 1951 - 2043 89 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTGIACEISGDHETCRHSLTTTQQAELHH >gi|292820655|gb|ACYT02000044.1| GENE 4 2097 - 2411 110 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191105|ref|ZP_06609080.1| ## NR: gi|293191105|ref|ZP_06609080.1| hypothetical protein HMPREF0970_01418 [Actinomyces odontolyticus F0309] # 66 104 1 39 39 67 97.0 2e-10 MPVALVTVPQELSISHSCETSCVNGCAHATARRRSPPHSPGVSSLAWARSRKTQPRPRDQ RSRLLLGRKLSGITFSLSSASGVGRAFRLAVGIMERDLLMTGGG >gi|292820655|gb|ACYT02000044.1| GENE 5 2517 - 2747 243 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191106|ref|ZP_06609081.1| ## NR: gi|293191106|ref|ZP_06609081.1| hypothetical protein HMPREF0970_01419 [Actinomyces odontolyticus F0309] # 1 76 21 96 96 143 98.0 3e-33 MNPFHLSKALAHVTLVVDTDRLDDADGRTLIALGILEAVEACTRSSEMVECLDGAYIHDD DWDEEQLVLKPWPAAR >gi|292820655|gb|ACYT02000044.1| GENE 6 2744 - 2926 165 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSEYRKDVTSGTCELCIVDWSARIRDISFELTDVDTGATWQATTPPFTSAGGTTSGRYA >gi|292820655|gb|ACYT02000044.1| GENE 7 4428 - 5117 -278 229 aa, chain + ## HITS:1 COG:no KEGG:ECB_02621 NR:ns ## KEGG: ECB_02621 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 11 227 64 280 282 84 35.0 4e-15 MILVLNCLVAGSSPLTRGKHRIILPTDRPVRPIPAHAGKTCCRRKTWGRGQAHPRSRGEN IHGLEGARRGVGSSPLTRGKRGQESGCYFVEGLIPAHAGRTWLRRFPMTGRTAHPRSHGE NEALAASDATDKGSSPLTRGKHVAGVRRGAGGRLIPAHAGKTSTASRALVGVSAHPRSRG ENVGRRAVATSWRGSSPLTRGKRYRERDAAAGTRLIPAHAGKTTSISDG >gi|292820655|gb|ACYT02000044.1| GENE 8 5419 - 5916 -433 165 aa, chain + ## HITS:1 COG:no KEGG:ECSE_3008 NR:ns ## KEGG: ECSE_3008 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 4 137 24 157 164 68 40.0 6e-11 MRGPRRLIPAHAGKTIHSTNRADSCGTHPRSRGENGEVGLEPGGSGGSSPLTRGKLLSRS VDERRERLIPAHAGKTVNTITSARAIEAHPRSRGENDNPALLVGKCGGSSPLTRGKPPRA DPRRLPARLIPAHAGKTCRCPASRPSTWAHPRSRGENDRRSSRRA >gi|292820655|gb|ACYT02000044.1| GENE 9 6887 - 7360 -574 157 aa, chain + ## HITS:1 COG:no KEGG:ECSE_3007 NR:ns ## KEGG: ECSE_3007 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 5 157 24 176 181 64 37.0 1e-09 MRRRGSSPLTRGKRGARRRSAPRRGLIPAHAGKTRASPQPAGQLGAHPRSRGENGRPRRR AMRRRGSSPLTRGKRGARRRSAPRRGLIPAHAGKTRASPQPAGQLGAHPRSRGENQRGLD ASLRAGGSSPLTRGKRDGRAAHFCDPRLIPAHAGKTI >gi|292820655|gb|ACYT02000044.1| GENE 10 7665 - 8117 -328 150 aa, chain + ## HITS:1 COG:no KEGG:Mhun_1373 NR:ns ## KEGG: Mhun_1373 # Name: not_defined # Def: hypothetical protein # Organism: M.hungatei # Pathway: not_defined # 10 141 11 142 160 67 35.0 2e-10 MSFALVARSGSSPLTRGKRSREALREEENRLIPAHAGKTSGVLMPRCVLAAHPRSRGENA TGVRRISATHGSSPLTRGKPYDVDGFDVIPGLIPAHAGKTRELMRRTPLAGAHPRSRGEN CPRTSRGRRRRGSSPLTRGKLVDDFAQRIR >gi|292820655|gb|ACYT02000044.1| GENE 11 8775 - 9116 172 113 aa, chain - ## HITS:1 COG:no KEGG:Namu_3048 NR:ns ## KEGG: Namu_3048 # Name: not_defined # Def: CRISPR-associated protein Cas2 # Organism: N.multipartita # Pathway: not_defined # 1 68 22 89 124 86 67.0 3e-16 MEISPGVFVGTLSARVRERLWDIVTENMKTGRAVMVYRARNEQGLEFLTWGDPWKPVDFD GLTLMMRPYYSEGRGQYSEPDPAARQLRKRPAMSNFQKRRKAQGFPRSDRSAR >gi|292820655|gb|ACYT02000044.1| GENE 12 9176 - 10138 510 320 aa, chain - ## HITS:1 COG:ygbT KEGG:ns NR:ns ## COG: ygbT COG1518 # Protein_GI_number: 16130662 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Escherichia coli K12 # 12 279 5 272 305 193 38.0 3e-49 MRPIPGAKPPEPKDLVRVRDRLTFLYVERCTINRDSNAITVADGHGIAHVPAAALSVLLL GPGVRITHSAVSVLSESGSTIVWVGENGVRYYAHGSPPSRSSRLLEAQARAVSDPSMRLT VARNMYLMRFAGEDVSKLSLQQLRGREGARVRRLYREHSQRTGVPWDRREYDPENYEDGT VVNQALSAANSAIYGIVHAVIVALGCSPGLGFVHNGTYRSFVYDIADLYKADLTIPIAFD VAASPTDEAVGSAARKAVRDAVREFRLLERCVADIKGLLLVSGALSVEDDDDLIVADLRL WDDREGAVAAGVLYEESGSW >gi|292820655|gb|ACYT02000044.1| GENE 13 10135 - 10884 177 249 aa, chain - ## HITS:1 COG:no KEGG:Tcur_2684 NR:ns ## KEGG: Tcur_2684 # Name: not_defined # Def: CRISPR-associated protein, CSE3 family # Organism: T.curvata # Pathway: not_defined # 1 247 1 227 229 171 46.0 2e-41 MYLTRIYLNPHRRGAKQLMRSRQTLHAAVLNCFPPSVLDDPGAPRVLWRLDRPPAVRGAA PRQGSPSCSLYISSPVAPDPSHIVEEAGYATEGGVVIRDMSSFLEGLWAGQRWGFRLCVN PTFREGSQVNARGRKKVLAHVTQDQQTQWVLERAEKCGFRVLTSAELGGELPVLEDSDGQ RVDGANLLINGVERSIAEFKRGERRVTLGVATFEGVLEVTDPDALRRVLTHGIGRGKAYG CGLMTLARP >gi|292820655|gb|ACYT02000044.1| GENE 14 10884 - 11363 290 159 aa, chain - ## HITS:1 COG:no KEGG:Tcur_2683 NR:ns ## KEGG: Tcur_2683 # Name: not_defined # Def: CRISPR-associated protein Cas5 family # Organism: T.curvata # Pathway: not_defined # 1 159 85 231 234 115 43.0 5e-25 MPLSHRFYRADAAFGAFIEGPDDMIDALAQAIVRPVFPLYLGRRSCPPTLPLRLAVREGN AWDAVRETPWMASTYYQKKQRHDHFVRMRVVADLGIIPPEVEKVAQQTLQDMPISFDSEN RKYTLRTVEETYIDLENPQYVETKLQAHPGLVHDPMEVL >gi|292820655|gb|ACYT02000044.1| GENE 15 11609 - 12733 1149 374 aa, chain - ## HITS:1 COG:no KEGG:Namu_3052 NR:ns ## KEGG: Namu_3052 # Name: not_defined # Def: CRISPR-associated protein, CSE4 family # Organism: N.multipartita # Pathway: not_defined # 5 370 4 371 378 307 49.0 5e-82 MSVFVDIHVLQTLPPSNPNRDDTGAPKSATFGGVQRMRISSQAIKRATRQDFEGKIADGN YGVRTKKIVELVARTITEKRPDLAAASIELAEMGLKAIGFKLAEPRGNKSDKELKESGFL VFLSAKQIEHVSDALISVAHEDDPAAAFKELKPRSLVDTDHSIDIALFGRMVAEPNALNV DAACQVAHAIGVGAVEREYDYYTAVDDAKKRSDEADEGAGMIGTIEFASATVYRYATINV DLLRENLGDDAVADRAVELFVDSFVRSMPTGKVTTFANRTLPEAVLVQVRDDQPINMSGA FEEPIIAGQHGFAELAIARFVEFESQLRELTGLEAVESLVSWTTPRGESFSELGKQVRLA SLGETAAEAVRGTR >gi|292820655|gb|ACYT02000044.1| GENE 16 12779 - 13429 272 216 aa, chain - ## HITS:1 COG:no KEGG:Caci_3908 NR:ns ## KEGG: Caci_3908 # Name: not_defined # Def: CRISPR-associated protein, CSE2 family # Organism: C.acidiphila # Pathway: not_defined # 39 206 41 207 223 79 35.0 9e-14 MTSNDAAPETPPDGGAKGLSTRRAVYGRVGGLIVTRLWNKTPSARALRAQLRGALSQEAG SVPELWDLTLDDRPGYLGDEPTRGEKAVHGALTLWALHQGSNSRPMHDTSDRPRSFASAV RVVAEGQSGDKRAEETPIYRRFSAAVQAPTFEGLLVHLRSLISQLEAAEIPCDYAQLAAD LFTWQDPRDRTSVMRNWGRQFARPAETIHTETDSDD >gi|292820655|gb|ACYT02000044.1| GENE 17 13426 - 15096 864 556 aa, chain - ## HITS:1 COG:no KEGG:Namu_3054 NR:ns ## KEGG: Namu_3054 # Name: not_defined # Def: CRISPR-associated protein, CSE1 family # Organism: N.multipartita # Pathway: not_defined # 6 520 5 510 555 301 38.0 5e-80 MKNPEYNLLDEPWIPVRLVDGTITDVGLLELLRRTTDIADLACELPTQSIAIQRLILAIM YRVATPRDTRDWVRQWDEGAPTEQMIEYLERWRDRFYLFGGRFPFMQVADLRTAKDAVSG LEKLIADVPNGEQFFTTRHGRALACIPASEAARWLVHAQAYDPSGIRSGAVGDSQVKGGK GYPIGPAWCGHLGLVWLKGKDLDETLVLNLIPATTAELRGVDSSTDWGACSWEDPEPETS VRGDYSLLDPAGTPKELSIPRLLTWHSRRIRLVGDSSGVTGVVLAQGDKLAPQEMRLYEP QSLWRYSTPQSKKFKTDVYMPRKFEAGRALWRNLPGTLPTVTTVQGVDKQPKREFLPSAT LSFHYQLDNASIQTSYPKVMRIQAVGVTYGPQEATFEDIYSDELTLSVAVMRVEREDLSA QIDREVRLTEEVARDVGTLAANLARAAGESGDGAGDGARYRAKELFFSAVDNDFRAWLTQ VDGHESARDVGCRWECILRQHALGIQTELVRSASSSAIVGRDTGRGYMNVGIAENYFRSA LNKRLPVQNTNQEGTK >gi|292820655|gb|ACYT02000044.1| GENE 18 15093 - 17912 1285 939 aa, chain - ## HITS:1 COG:ygcB KEGG:ns NR:ns ## COG: ygcB COG1203 # Protein_GI_number: 16130668 # Func_class: R General function prediction only # Function: Predicted helicases # Organism: Escherichia coli K12 # 150 755 189 769 888 207 29.0 9e-53 MDAADVAGFLFDDYLSEHHRRLMASVWGGDRAKARASFVFLAGVHDAGKVSPQFACQRQD LAQLIRSEGLVVMRKADYAERSFLPHGLVSQFALQEEIAAGGGDGSRALQWAILVGVHHG RYPDAGAVYVARQQYKTQEGSREDDPRWGQVRSEILRWMAARSGFPLVAPGTALPELPIA VASAYASALVIADWLASNEDYFQLRPRPVDEAGKLSIDGYPELTANQQRDRVRRAWKRAA FPTPLRIPTTPSDEVTDFYRHRFGWPASYCPTEAQRAAIEIATHEDPDLMIVEAPPGSGK TELAFAAAEVLMRARGLQGVFVALPTQATTNAMFERVTAWLTSILGDEPQKLGIQLAHGK NSLNESFVKLLARGKSPLEVHDDEEDLGLYASRWMGQRWRSTLSPVVVGTIDQVLLAALK SRHVLVRHLGLMGKVVVIDEVHAADEYMETYLEAALTWLGMYGIPVVLLSATLPPARRLA LLNAYRRGRGSSGVSAESVDVMIGYPAISTVSAAGVRVHEIVGEAEVPKRIIPTSLGSPL EIAELLDRELAYGGCAVVIRNTVREAQETYEAVRSVFGREQSTLLHSRFLAAERAARDRR MLELFGKDSQQRPFRHVVVATQVIEQSLDVDFDLMLTDPAPMDLVLQRIGRLHRHDRAER PSGLRGARCLLIIEDMTSDPWAYSRGTDYVYARYAVLRTLGIIAGRGEILVREPRDYAEL TTLAYDDDTQVGPTPWREAFDAALEERDKARAQAQAKATTWCLGEENTPSWQSLELEEKF LGNATTGDESKGPGVAAARAAVRDGEDQIPVLVVALDPELGNVPMAPPISGAPEGDTPLA VGEYNARGRIADICSWSISLPPWALRARGQSIDEAVDAVAGAIWDDPITTEWSCREHPFL AGELILAMYKTPDGERLTRDLCGHTFTYSLERGMEVQGQ >gi|292820655|gb|ACYT02000044.1| GENE 19 18481 - 19177 787 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191128|ref|ZP_06609103.1| ## NR: gi|293191128|ref|ZP_06609103.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 232 1 232 233 266 100.0 1e-69 MSNDPRENLHGSDSQELADVTADAARAGAERAASTPAHTSDEAPAPRSALSSFEEILSGT THEADAPTADTPAETLADDGAQDLQEPLASSTPLVTTDEAEASPAALTTDAAAAAQTTAE TASDIAPETATPQADPEQPAQELTPANSTNTTGNTASTNVNNAIAAPVHLPPAEPRPWYR SRRSFSAKGSGGRVQVAGLGLTYTDHVTGAVLLANIDLGFRARSLSAILDPT Prediction of potential genes in microbial genomes Time: Tue May 17 06:46:59 2011 Seq name: gi|292820591|gb|ACYT02000045.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.21, whole genome shotgun sequence Length of sequence - 73152 bp Number of predicted genes - 56, with homology - 54 Number of transcription units - 30, operones - 11 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 851 540 ## gi|154508260|ref|ZP_02043902.1| hypothetical protein ACTODO_00756 2 1 Op 2 . - CDS 838 - 1308 560 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 3 2 Tu 1 . + CDS 1441 - 3048 2277 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 4 3 Tu 1 . + CDS 3152 - 4618 2158 ## COG0362 6-phosphogluconate dehydrogenase + Term 4648 - 4684 8.7 5 4 Tu 1 . + CDS 4757 - 7117 3277 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Term 7392 - 7439 20.1 6 5 Op 1 27/0.000 - CDS 7472 - 7930 418 ## PROTEIN SUPPORTED gi|227384530|ref|ZP_03867939.1| LSU ribosomal protein L9P 7 5 Op 2 21/0.000 - CDS 7952 - 8194 341 ## PROTEIN SUPPORTED gi|227494167|ref|ZP_03924483.1| ribosomal protein S18 8 5 Op 3 24/0.000 - CDS 8289 - 8855 724 ## COG0629 Single-stranded DNA-binding protein 9 5 Op 4 . - CDS 8891 - 9181 356 ## PROTEIN SUPPORTED gi|229822655|ref|YP_002884181.1| ribosomal protein S6 10 6 Tu 1 . - CDS 9447 - 10820 1700 ## COG0534 Na+-driven multidrug efflux pump - Prom 10874 - 10933 3.3 11 7 Tu 1 . + CDS 11159 - 12511 1891 ## COG0305 Replicative DNA helicase + Term 12700 - 12745 0.4 12 8 Op 1 . + CDS 13224 - 13766 874 ## COG3797 Uncharacterized protein conserved in bacteria 13 8 Op 2 . + CDS 13876 - 14853 531 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 14873 - 14923 15.1 14 9 Tu 1 . - CDS 14892 - 15479 296 ## gi|293191187|ref|ZP_06609120.1| conserved hypothetical protein 15 10 Tu 1 . - CDS 15631 - 16230 300 ## gi|293191188|ref|ZP_06609121.1| conserved hypothetical protein 16 11 Tu 1 . - CDS 16375 - 17028 504 ## gi|293191189|ref|ZP_06609122.1| conserved hypothetical protein 17 12 Op 1 . + CDS 17114 - 17608 571 ## Jden_0664 hypothetical protein 18 12 Op 2 . + CDS 17705 - 18985 2020 ## COG0104 Adenylosuccinate synthase 19 13 Tu 1 . + CDS 19632 - 20552 1127 ## gi|293191192|ref|ZP_06609125.1| conserved hypothetical protein 20 14 Op 1 . + CDS 20673 - 21332 1010 ## gi|293191193|ref|ZP_06609126.1| conserved hypothetical protein 21 14 Op 2 . + CDS 21325 - 22494 1151 ## COG0354 Predicted aminomethyltransferase related to GcvT 22 14 Op 3 . + CDS 22494 - 23021 376 ## COG1490 D-Tyr-tRNAtyr deacylase + Prom 23049 - 23108 2.2 23 14 Op 4 . + CDS 23309 - 25777 2514 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 25817 - 25869 11.6 + Prom 25834 - 25893 2.7 24 15 Op 1 . + CDS 25963 - 31809 5653 ## Achl_1331 fibronectin type III domain protein 25 15 Op 2 23/0.000 + CDS 31887 - 32852 1127 ## COG0714 MoxR-like ATPases 26 15 Op 3 5/0.000 + CDS 32873 - 34099 812 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 27 15 Op 4 . + CDS 34096 - 36771 1974 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 28 15 Op 5 17/0.000 + CDS 36768 - 38300 816 ## COG0515 Serine/threonine protein kinase + Prom 38330 - 38389 3.1 29 15 Op 6 . + CDS 38437 - 39309 333 ## COG0631 Serine/threonine protein phosphatase 30 15 Op 7 . + CDS 39309 - 40634 1536 ## gi|293191205|ref|ZP_06609138.1| putative FHA domain protein + Term 40648 - 40698 12.1 31 16 Tu 1 . + CDS 40867 - 43584 4090 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 43731 - 43762 3.2 32 17 Tu 1 . - CDS 44417 - 45226 976 ## Mlut_21550 CAAX amino terminal protease family + Prom 45577 - 45636 3.3 33 18 Op 1 5/0.000 + CDS 45737 - 47374 2380 ## COG0672 High-affinity Fe2+/Pb2+ permease 34 18 Op 2 3/0.167 + CDS 47430 - 48062 1000 ## COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport 35 19 Op 1 4/0.167 + CDS 48198 - 49517 1836 ## COG4393 Predicted membrane protein 36 19 Op 2 10/0.000 + CDS 49527 - 50804 1753 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 37 19 Op 3 36/0.000 + CDS 50810 - 51997 168 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 38 19 Op 4 1/0.333 + CDS 52006 - 52791 278 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 39 19 Op 5 1/0.333 + CDS 52788 - 53363 921 ## COG4939 Major membrane immunogen, membrane-anchored lipoprotein 40 19 Op 6 . + CDS 53401 - 54564 493 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 41 20 Tu 1 . + CDS 55010 - 55228 101 ## - Term 55268 - 55308 2.1 42 21 Tu 1 . - CDS 55416 - 56006 797 ## gi|293191218|ref|ZP_06609151.1| conserved hypothetical protein 43 22 Tu 1 . + CDS 56005 - 56256 97 ## 44 23 Tu 1 . - CDS 56125 - 59139 2971 ## COG0277 FAD/FMN-containing dehydrogenases 45 24 Tu 1 . - CDS 59267 - 59500 194 ## gi|154508537|ref|ZP_02044179.1| hypothetical protein ACTODO_01038 - Prom 59535 - 59594 3.7 - Term 59581 - 59628 5.7 46 25 Op 1 . - CDS 59839 - 61701 1630 ## Svir_19530 alpha/beta hydrolase of unknown function (DUF1023) 47 25 Op 2 . - CDS 61705 - 62049 266 ## gi|154508539|ref|ZP_02044181.1| hypothetical protein ACTODO_01040 - Prom 62087 - 62146 3.9 48 26 Tu 1 . + CDS 62276 - 63940 1786 ## HMPREF0573_10934 hypothetical protein - Term 63976 - 64017 13.4 49 27 Op 1 . - CDS 64033 - 65178 1244 ## COG2267 Lysophospholipase 50 27 Op 2 7/0.000 - CDS 65263 - 66420 1606 ## COG2021 Homoserine acetyltransferase 51 27 Op 3 . - CDS 66530 - 67855 2162 ## COG2873 O-acetylhomoserine sulfhydrylase + Prom 68174 - 68233 2.2 52 28 Tu 1 . + CDS 68315 - 69646 1580 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 53 29 Tu 1 . - CDS 69718 - 70212 746 ## COG0221 Inorganic pyrophosphatase 54 30 Op 1 . + CDS 70315 - 71670 1657 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 55 30 Op 2 . + CDS 71675 - 72517 979 ## gi|293191232|ref|ZP_06609165.1| conserved hypothetical protein 56 30 Op 3 . + CDS 72507 - 73152 370 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Predicted protein(s) >gi|292820591|gb|ACYT02000045.1| GENE 1 2 - 851 540 283 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508260|ref|ZP_02043902.1| ## NR: gi|154508260|ref|ZP_02043902.1| hypothetical protein ACTODO_00756 [Actinomyces odontolyticus ATCC 17982] # 1 275 1 275 804 354 98.0 4e-96 MAVTRRALTAGVLCAAIALPFGLGLSEAGAAPLPTVTSQSDESRPTVMGTVSEDSGLSVS INSLSPRIITDENELVITGTVRNDSPTTLANISLEVFVANETPISVPALTTALSDDEPDA THAASSSLTDVARGATTSFEIRIPTSSLPLTDAEEWGPRVTTVTATSGEYSGKDRSIIVW DSGAQISASRVSTVIPWTSTSTTQDQGERSAVLSLASASGVTLAVDPLLIPRGPQPTATP TPSASPSTSPSADAGQSGSDPAQSGQSDAESGQSDAPTASPSA >gi|292820591|gb|ACYT02000045.1| GENE 2 838 - 1308 560 156 aa, chain - ## HITS:1 COG:MT4027 KEGG:ns NR:ns ## COG: MT4027 COG0494 # Protein_GI_number: 15843541 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium tuberculosis CDC1551 # 13 150 64 201 248 134 53.0 5e-32 MRAGRSHLPISAETSAGGIVVDVRDGIPYAALIARRNRAGRIEWCLPKGHLEGSETPQQA ALREVAEETGIHGRIIRHLASIDYWFSGNDRRVHKVVHHYLMGYESGTISVDGDPDHEAE EAAWVPLRDVSRQLAYPNERRIVRIALDLLYRDGRD >gi|292820591|gb|ACYT02000045.1| GENE 3 1441 - 3048 2277 535 aa, chain + ## HITS:1 COG:MT4026 KEGG:ns NR:ns ## COG: MT4026 COG0617 # Protein_GI_number: 15843539 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Mycobacterium tuberculosis CDC1551 # 22 495 9 476 480 485 55.0 1e-137 MSTQSASPNNGPVTAQNAGTTDIPTLMANATRTFAALPPAIMELGTIFDEAGEELALVGG PVRDAFLGVTPHDFDMTTSARPERTEELLAQWGNATWDIGKEFGTIGGRRGDLVVEVTTY RTDEYEIGSRKPEVTFGDTLEGDLTRRDFTVNAMAMRLPQMALVDPCGGLADLADGNLRT PVSAEQSFDDDPLRIMRAARFSAQLGLDVDMDVMNAMETMASRLEIVSAERIRAELERLI ISPYPRRGIELMVHTGVADIVLPEVAGLVSTVDEHKRHKDVYEHTLTVVEQAMDLETGPD GAVPAPDFILRFAALMHDVGKPATRRFEPNGTVSFHHHEIVGAKMTRKRMKALHFDKATI EAVSNLVALHLRFHGYGEAAWSDSAVRRYVADAGDLLERLHRLTRADCTTRNRRKANYLS AAYDDLETRIAALREQEELDAIRPDLDGDQIMEILGLRPSRAVKIARDYLLELRMERGPL GEEAARQALLDWWASDDVRALAEEYQAQQAHWEAKVAEKKARKAAAKAAREAQGQ >gi|292820591|gb|ACYT02000045.1| GENE 4 3152 - 4618 2158 488 aa, chain + ## HITS:1 COG:Cgl1417 KEGG:ns NR:ns ## COG: Cgl1417 COG0362 # Protein_GI_number: 19552667 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Corynebacterium glutamicum # 11 480 8 478 484 585 63.0 1e-167 MSTFTPEKASADIGVYGLGVMGANLARNLARNGYATAVFNRTQARTEKLMAEHGDEATFV PASTLEDFVASLRAPRVAIMMVQAGPSTDAVMEQLADLMDEGDIIVDCGNSLFTDTIRRE KWAAERGLHFVGAGVSGGEEGALWGPSIMPGGTPASYDRLGPMFEAIAGTYDGVPCCTYI GANGAGHFVKMVHNGIEYADMQVIAEAYTLLREGLGATPAEIADIFAAWNEGELNSYLME ITVEVLRQVDAETGKPLVDLIVDAASQKGTGKWTVQTALDLAVPVTAIGEATFARGASSE PAQRAAGQALAGNATALVIESDEARAAFIEDVRQALFASKIVAYSQGFDEIEAGAKEYEW GIDKGALARIWRAGCIIRAAFLDDITRAYEADPDLPLLLAAEPFATRFQECTPALRRVVA QAALAGVPIPVFASSLAYFDQIRAKRLPAALIQGQRDFFGSHTYHRVDKEGVFHTLWAVD GRPEEQWS >gi|292820591|gb|ACYT02000045.1| GENE 5 4757 - 7117 3277 786 aa, chain + ## HITS:1 COG:Cgl2930 KEGG:ns NR:ns ## COG: Cgl2930 COG0744 # Protein_GI_number: 19554180 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Corynebacterium glutamicum # 54 734 5 702 720 270 32.0 1e-71 MATNNGQSDWNDIIEPGGSGTSGRDSLPSRRAARAAAGSHASRKAAKASSAGKKGPAKKK HRWAKRIGYSILTVFLGVFIAGMAVFLYLYNTLTVPAPDDLALAQKTTVYYADGTTEMGT LGDINRQIIDTTTLPDYVSKSIVASEDRTFYTNSGVDLKGIFRALINNLRGGARQGGSTL TQQYVERYYIGETTSYTGKLKEAVLAIKINREKSKDEVIGAYMNTIYFGRGAYGIDAAAQ AYFGHGASQLTLSESALLAAVIPAPSAWDPAVNPDKAKERWERDLNLMVEDGWITQADKD AAVFPETIDPDTLNSATMTGTNGYLMAQVKQELLASDQFDEDKISQGGLRITSTIVKEHQ EQAVAAAEGMNEVEGWDPTHQHVALSSMDPATGEILAEYAGADYEKRQQNAVTQDIAMAG SAFKPFALLANARLGGTVYDTYSGKSPQYFRGMGTPVSNDGGYSFGNVTLVKATAYSMNT VFVGLNDDVEPENTLKAAIDAGIPEDTVGLNDELLNVLGPSSPHNIDLTTAYSTIANGGE RVTAHIVKKVEDSNGKLLYSGDVAPKRVFDVEEVSSIMPALEAVTKGEGTAANVDPAIAR LTTAGKTGTSSDQLSAQFVGFVPGMVTAVSMYQSDDAGNSVPLDDVGGLAQFHGGDWPVD VWIDYMKPATANLPGDDFPWKVESNRKVHNNAPTPAPSATTDAPQSAAEPTETPTPTETP SAEPTENSQNGGNGSNNGNGGNNNGGNGSNNGNGGNNNGGNGPNNGNGGNNNGGNNNGNN NGGRRN >gi|292820591|gb|ACYT02000045.1| GENE 6 7472 - 7930 418 152 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227384530|ref|ZP_03867939.1| LSU ribosomal protein L9P [Jonesia denitrificans DSM 20603] # 1 150 1 149 150 165 56 6e-40 MATTKLILTHDVPNLGHAGEVVEVKAGYARNYLVPRGFAAKWTAGAQKQIDQIAAARRRH EIATIDDARAVRDALQGAVVEISGKVGNSGRLFGAVSAAAIADAVKEQLGQTIDRRRVII ASPIKAVGDYTVTVGLHTEVSANLKVRVSAAK >gi|292820591|gb|ACYT02000045.1| GENE 7 7952 - 8194 341 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227494167|ref|ZP_03924483.1| ribosomal protein S18 [Actinomyces coleocanis DSM 15436] # 1 80 1 79 79 135 86 5e-31 MAKPQLRNKPIKKKANPLKSAKIEKIDYKDTALLRKFISDRGKIRARRVTGVSTQEQRKI ARAVKNAREMALLPYSTTGR >gi|292820591|gb|ACYT02000045.1| GENE 8 8289 - 8855 724 188 aa, chain - ## HITS:1 COG:ML2684 KEGG:ns NR:ns ## COG: ML2684 COG0629 # Protein_GI_number: 15828449 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Mycobacterium leprae # 1 188 1 168 168 177 56.0 1e-44 MAGDTVITVIGNLTADPELRWTQSGAAVADFTVASTPRTYDRNAGEWRDGDTLFMRCSVW RETAENVAESLRKGMRVIVQGRLTQRSYDTQQGERRTVVELQVDEVGPSLRRARAQVTRT APSGGGGYQSDNRGQQGAPQQGGGYGGGQAGYGQGGANYGAPTGGSPEDPWRSAPAGGAT SFGDEPPF >gi|292820591|gb|ACYT02000045.1| GENE 9 8891 - 9181 356 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229822655|ref|YP_002884181.1| ribosomal protein S6 [Beutenbergia cavernae DSM 12333] # 1 96 1 96 96 141 62 9e-33 MRNYELMVILDPSIDERTVAPMMEKYLAPVAANGGSVENVDVWGKRRLAYDILKRSEGIY VVIDMTTTPEVALEINRRMGIDETILRTKLLRPDAH >gi|292820591|gb|ACYT02000045.1| GENE 10 9447 - 10820 1700 457 aa, chain - ## HITS:1 COG:Cgl1936 KEGG:ns NR:ns ## COG: Cgl1936 COG0534 # Protein_GI_number: 19553186 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Corynebacterium glutamicum # 27 416 13 398 435 165 32.0 2e-40 MTSTQGPSDPTSPAKRGEAPASSTPTITTRMILSLALPSLGALIAEPLFTVIDSTMVGHL GTPQLAGLGIASTVLNTAVGLFIFLAYSTTSLAGRHLGAGRRDRAIRSGVEAMWLAGGLG ALTAILLAIFASPLLTWLGADAATMPHALAYLHASAPGLVGMFVVLAATGTLRGLQDTRT PLVAASVGAVFNAVANWVLMYPLNLGVAGSGLGTAMTQTLMAAFLGWMIVRAARREGVSL RPSTYGLFGAALEGAPLLVRTLALRVALLATLSAVTAISTQALAAHQIVWTLWTFAAYVL DALAIAAQALAGFTTGTGERGAMRPLLRTLSRWGIGFGVAVGIALAITAPWITRIFTTDQ TVIDYATVAIIVGALFQPIAGYVFLLDGVLIGAGRGRYLAVAGIVNLVVYAPLLWIIAHS STLTARPSLALAMVWLAYSAVYTGMRALTNGFGARSL >gi|292820591|gb|ACYT02000045.1| GENE 11 11159 - 12511 1891 450 aa, chain + ## HITS:1 COG:Cgl2923 KEGG:ns NR:ns ## COG: Cgl2923 COG0305 # Protein_GI_number: 19554173 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Corynebacterium glutamicum # 8 439 74 506 510 457 55.0 1e-128 MSDDQFDRVPPQDIDAEMSVLGSMMLTTEAANIVSEMLRGQDFYQPSHETIFDTIVELNG RAEPADAITVAGELKRAGVLSKVGGAAYLHTLIASVPTAANAAYYARIVRERAIMRRLVT AGTRVVQLGYADAGGDVDEIVDQAQAEVYAVSDGRETTDYVSMTQMSSDILNALEDIEKN QGKLNGVPTGFTDLDELTQGLHGGQMIIVAARPAMGKSTLALDFCRSASMKHGITSLIFS LEMSSQEIAMRMLSAESGVRLSKMQAGKMSDVDWRKVAETTSRMSEAPLYVDDSANITIS EIRSKCRRLKQQENLGLVVIDYLQLMTSGRQVESRQQEVSAMSRNLKLLAKDLDIPVIAV AQLNRNSEGRTDRKPMMSDLRESGSLEQDADIIILLHRPDYYDKEDRPGEADIIVAKHRA GATATVTALFQGDMARFVNYTGRPEPGGGE >gi|292820591|gb|ACYT02000045.1| GENE 12 13224 - 13766 874 180 aa, chain + ## HITS:1 COG:SP0830 KEGG:ns NR:ns ## COG: SP0830 COG3797 # Protein_GI_number: 15900717 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 3 179 4 180 180 177 49.0 6e-45 MEYVALLRGINVGGKNKVVMSELRELIARAGFTNVRSYINSGNLLFESDAPAEDVAQVVE DILERNYDFPIRLAILTGEDYLAELSGLPDWWHGDIARRDALFYTRGLDRDHVRERIEAM ELGDEAVHFGESAVFWGKFDEKEFLKTAYHKRLLREDFYRQVTIRSGATVEKIAAMLSQC >gi|292820591|gb|ACYT02000045.1| GENE 13 13876 - 14853 531 325 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 82 324 7 248 255 209 44 4e-53 MASHSGRPGAIRKKGTKKGAQVGTGGHSRRRLEGKGPTPKAEDRTYHPAHKRKVKREARE AQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDNVKDDRVEEVVRL ASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSLQQLGHPLLVALD QVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARVPVARATNLVRAL EEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSRLVRETCDQIVSIPIAS TVESLNAAVATGIALYEVASLRAQG >gi|292820591|gb|ACYT02000045.1| GENE 14 14892 - 15479 296 195 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191187|ref|ZP_06609120.1| ## NR: gi|293191187|ref|ZP_06609120.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 195 1 195 195 400 100.0 1e-110 MTPGFSLRRIFNHRRYFYARVALDPQQALDLCIGYWVSTGAWGETPGMREQLAQQGWVGT EITTGSDARHIAVSSVFDEISPFGVFPSAAPRNVKRVRQENTPILIASRSCSVAGRPASE LWCCEARILHDERWGTDAFIDMSFRELAGDLQCQGLLLEAPRFFHGGDLPKDHLFTRENV LSMRKAAKKESRRRR >gi|292820591|gb|ACYT02000045.1| GENE 15 15631 - 16230 300 199 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191188|ref|ZP_06609121.1| ## NR: gi|293191188|ref|ZP_06609121.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 199 1 199 199 379 100.0 1e-104 MNSFISSMQQGFNESFSAITVFQLSAPPSDAVSRCVGLWKTKGARRTSTGMQEQFKQRGW TGTELIIGHSGRAFLTNVVFETRSYRRLLSHAPSLLPDRIKRATITKVYVDIIARTVESE SSPVTELWCLTDWATRMNLSGFEKSYAESSMHSLEESFNAQGIMTAPARDLNRWDIPSDI PLSLPELTAMRKAAKKSRG >gi|292820591|gb|ACYT02000045.1| GENE 16 16375 - 17028 504 217 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191189|ref|ZP_06609122.1| ## NR: gi|293191189|ref|ZP_06609122.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 217 1 217 217 417 100.0 1e-115 MDITPPRLPLDSLLKRRPMTVYTVSCPPAGAVARCVAFWRAIGIKRESTTICKRFADIGW SGTEVTVMPGQVENRKRLRDRDFPDDLSDIPPSLLLGGLAVYLTSKAVRAQLRHLNKTTI IVAARPMPGAEQASTELWCFPWDTAIQRARPGKDPFARVFEYLHTALHQQGILLAPPRLV DGEELPEDHPLSPTNIAQMRGSFLDPVTKFLPSKERS >gi|292820591|gb|ACYT02000045.1| GENE 17 17114 - 17608 571 164 aa, chain + ## HITS:1 COG:no KEGG:Jden_0664 NR:ns ## KEGG: Jden_0664 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 7 157 5 154 157 86 42.0 3e-16 MSVLGTVIVGIVILIGVIGAVVQIWPSAPVVGGAILVWSWMTGTRAAWIVFAIVAFVLIL GTVLKYVIPARGMNKAGIPQSTLVWGAVGGVVGWFIGLPLGLVLGMVAAIFLVEYLRSRD TASAWTATLHALKAFGWTIAIELIAALTSATLWGVGVALVAAGN >gi|292820591|gb|ACYT02000045.1| GENE 18 17705 - 18985 2020 426 aa, chain + ## HITS:1 COG:Cgl2708 KEGG:ns NR:ns ## COG: Cgl2708 COG0104 # Protein_GI_number: 19553958 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Corynebacterium glutamicum # 1 426 1 427 430 543 61.0 1e-154 MPAVIVLGAQWGDEGKGKATDQLGQHTDLVVKFNGGNNAGHTVVIDGEKYALHLLPAGIL SEGVTPIIGNGVVVDPDVLFEELADITARGVDCSRLLISSNAHIIPPYNRLMDQANERAR GNNLIGTTGRGIGPTYADKMNRIGLRIQDLFHPEELRAKVEAALAPKNTIFEAVDLEVLD PAEVSDHLLSFADRIKPMLCDVSLVVNDALDRGDTVLFEGGQATMLDIDHGTYPFVTSSN PTAGGALTGSGVGPTRIDRVVGVAKAYTTRVGEGPFPTELDDEVGEALRTKGGEFGVTTG RPRRTGWFDAVIMRYSTRINGLTDICLTKLDVLSGYETIPVCVAYEVDGVRTQEMPLDQA GFEAAVPVYEELPGWSEDISQCRSFDELPQAAQDYIKRLEELSRCRIQSIGVGPGREATI VRYPLM >gi|292820591|gb|ACYT02000045.1| GENE 19 19632 - 20552 1127 306 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191192|ref|ZP_06609125.1| ## NR: gi|293191192|ref|ZP_06609125.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 27 306 1 280 280 404 99.0 1e-111 MTSTPPTRRRTGSSRGRRRDTLANRHVPTIIGILTVTVLAAATIVAWWLPGSRWSVGPVV AVASFLLALGWPTLARLHMPWLAQAVLALGGALTPLGVAYWKNLDIAVPLTGITLVALVA ATILDAPAPRDHSVGRTSEHWGSTALSAALASSVTCLLIVTSGSMWVSLTVHERWSGIVP MAALIAVIGAASARFGRSAKVGVAFAMIAGLVAGLVVASIAWFLGQTSDLLPVVFPFIAK RFGEFAAFLTLGGVTGFGVGFAVSVVDALLGERASSAELANILGRGAAKFLVAALPVYAM IRIGGI >gi|292820591|gb|ACYT02000045.1| GENE 20 20673 - 21332 1010 219 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191193|ref|ZP_06609126.1| ## NR: gi|293191193|ref|ZP_06609126.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 219 2 220 220 389 100.0 1e-106 MVIPADLPALVAPVAWMLGTWEGWGMYAAPAAPGQEEPTEDSPVIEEIRGDVVGEQMRLV TRVYAGVASEPIDPTWDAAKGLSAIKKDDLISEETVYVSVAPSDAPLPPPGQYNPREFTA TSASTEGHSAVWDGVSVGPRVQMVSDAIALGVGATRVTHLGRMFGLVAGELMWTQERTLD GEDEVDVEISGRLMRTAQASTESGEVIEGIDDTQDGFLV >gi|292820591|gb|ACYT02000045.1| GENE 21 21325 - 22494 1151 389 aa, chain + ## HITS:1 COG:ML2203 KEGG:ns NR:ns ## COG: ML2203 COG0354 # Protein_GI_number: 15828181 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Mycobacterium leprae # 19 365 21 358 373 160 36.0 3e-39 MSESAFDSEFVDEAVASFGATPHFGDPSGEQWALEGGRALVRRPDLAVISVSGADRLTWV TSLASQNVTDLVPGASRELLILSPEGRVEHWAGASDDGETLHLIVERSDVSEFVAFLESM RFALRVAVSERDVAVFSSIRAGANMPESAADLPGHLWTWEDPWPGVVEGGAAYFQGECHP GARTPMMFHAVSREAADEFEAAWLSACPEAGSRRRAGYLAWEATRIAAWKPRLGRETDAR AIPPELDWLRSAVHTTKGCYRGQETIARVLNLGRPPRRLTYLQLDGSRGDLPAPGTPIEV GGRQVGVITSSARHADEGPIALALIARAVPVTTVFDIDGVAAAQEEIVPVHGKSSVSPET RPGADLSREAGQRGGSTGFGGLGSALGSR >gi|292820591|gb|ACYT02000045.1| GENE 22 22494 - 23021 376 175 aa, chain + ## HITS:1 COG:Cgl1872 KEGG:ns NR:ns ## COG: Cgl1872 COG1490 # Protein_GI_number: 19553122 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Corynebacterium glutamicum # 1 174 1 143 144 127 44.0 1e-29 MRAVIQRATSGEVRVDGTVVGRLAFDSLDESGARRESVASRVGGQDPAVPAGESGCETRQ GLVVLLGVQRGDGAEQVATVARKIAELRILDGELSAADAGAPILVISQFTLYGDTRKGRR PSWAHAAPGEEAESLVDAVVADLRGRGLHVETGQFGAMMEVSLVNDGPFTVLVEA >gi|292820591|gb|ACYT02000045.1| GENE 23 23309 - 25777 2514 822 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens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gi|292820591|gb|ACYT02000045.1| GENE 24 25963 - 31809 5653 1948 aa, chain + ## HITS:1 COG:no KEGG:Achl_1331 NR:ns ## KEGG: Achl_1331 # Name: not_defined # Def: fibronectin type III domain protein # Organism: A.chlorophenolicus # Pathway: not_defined # 34 1727 36 1742 2040 784 35.0 0 MRAQKRRNVTGVRRRLPAFVLMLVVAALCIAGVIYKGAEVTQVNVNDGGIWVTNKSKQLV GHLDYEARILDGALRTEATNFDVGQAGETVTVSDLGSLTVAPVNVTQVALGSPTALPAGS SAMQGGDVLGVLNAADGTLWTTSAASPSPSNLADSAALASNMGVSAFVTGEDGSVYSLSN SGTLTTVKRSGSVDQAKTTQVTGIPDGARLSITVVGDQVVALDSASNTLFLPGNKTLDLG AAGIEADAVLQQAGPKDDSVLMATATSLVAIPLTGGQPVITPAAEGAPTGIPAAPVRHEG CAYGAWSGSGAYVRSCKDPTSNEQMVVDTLVSAREVVFRTNRKAIVLNDVAEGNVWLPDS NMVLMDNWDEVENQLEESEEEQDSPELTNEVADPQQREENTPPEAVDDEFGIRPGRSTIL PVLDNDSDLDGDVLTATPTTQPGWGSVVVARSGRALQIEDVSADQSGSTSFTYDASDGRA SASAHVQVTIHPYGQNEAPTQVRSSSVKIGVGAQIQYQALSDWRDPDGDPIYLKEVQAPT GLNVSFVEDGTVTIAEEGASAGPKTIVLTVADDQGAEARGELVVNVQEAGNLPPSANGDL FQAQPGEIVTLDPLKNDTDPNGDPLSLAAVSGAPSGATLTPDLDRGTIDFRAQQPGSYSF AYTVSDGIATTLGIIRVEVVASSSVRPIAENDTAVLPQGGSVLINPLGNDYDPAGGMLSV TSVDTTKAPDIEVALIERHLLRITAHAGIDKTVTFSYTVSNGQGSATAEVTVIPGASDRS DMAPVLRPDRAKVRVGDVGTVSVLSNDRSPAGLNLQVESTLEYDQASAVGTPFVTGNQVR LAAGTSPGLLEVTYSVIDSAGNRASSTVTFEVIPDSDSNEAPRPRTLNAWTSAGQAVTIP VTLSGIDPDGDSVTLVGVDSSPTQGVATASATWIDYTPNRGAVGTDTFTYTVEDRKGARA SARVRVAISPSPTSNQNPVAVPDTVQARPDRVLNINVLSNDVDPDGDTLTLDEGGLTTAT PALNPQVRSATTISVRTPSETGSYAVAYTVSDGRGGSATGLATIYVSEDVPLKAPVARDD YVAYTELPEDGSAVRVRVVDNDDDPDGSVDELKVTTGESGVNVSGQDLLIPVSDQLRLVV YTITDRDGLTNSAVVTVPGRNATAPFLNNANLPIEVDAGSQRTISLADYVIVRSGRSAQL VEGSSPAAQAGLTSVSAEGATQLTISAAESFSGNTAFTIQVSDGDDAGALSSSLSVPVRV RATQNQPPTFTPTGVRVEAGGEAVTQNLALGVTDPEGGDPSTFTYSVGTVPDGISASVSG STLTVTAAQGTARGPAGSIAVSVTDTDGNSVSGSVPVEVVASSKPHVSAPDYQERARVGE TVRVDVASRAINPFPDSPLTLEGAVMGLGAGRVHAEGTVVSITPDAVGTIKVTYRLNDYL RDPSRSTQGTITVTVVGAPDRPTGVHAEARGTSGARLTFTPGATNGATVTGYRVLDADSG QQVSATCTAGSCTVDGLSAGRGYSFSVVATSSEGDSKPSAASNRITTVGKPSQMVAPKVE AGDSVLKVSWVAPENDGGSKIDHYEVQVNTDEPITVHGLSTTLSVVNGHDYAVRVRAVNG EGQAGPWSSPTSGHPHPSHVAPDEPVVTVTTERWEGQGVIVAKVFVSWTVGNSGGSGWGQ TTINVNGESQNVTGDTRKLKVVLEDSATTATVTVTVRNLEGDATTSAPQTVRIPPNPNTP PFEIDPPTITATGNSGQLHATNVNVKPGRGYLANELTVFWGTSGADCSAKARANDKNRRV QGTNFVWFGGDEANGVPQNFYFCQISTSGMVSSAIRVTGTPRNDHAAPDKDWANIPIDAE FVGYPDGGFAVGIRRSKEIEGLCTYGCRLKVVDSATGQTIYKQSDAVISPTETPALRVLG SELPNDGGYKVALYISLSTGKEIVKYMH >gi|292820591|gb|ACYT02000045.1| GENE 25 31887 - 32852 1127 321 aa, chain + ## HITS:1 COG:PH0776 KEGG:ns NR:ns ## COG: PH0776 COG0714 # Protein_GI_number: 14590644 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Pyrococcus horikoshii # 7 317 2 311 314 283 45.0 2e-76 MSLSIEDATRFAQVFKNLVNGVSVAVLDKRQAVRLALTTMFAGGHLLLEDAPGTGKTALA RAISAVIDGTHSRIQFTPDLLPSDITGVNMFNQKTGEWVFHAGPVFAEIVLADEINRASP KTQSALLEVMEEAQVTVDGVRRPAPQPFMVIATQNPVEQAGTYPLPEAQLDRFLMKTSIG YPSRSAMIDVLDGSASPDRSKNLQPMVSGQDIVAWSALAADNHTDRAVLDYVAALAEATR EDESSMLGVSTRGAIGMVRCTRVWAAAQGRNFVLPDDVKALAVPLWAHRIVVDPDAAFSG ATSEGVIQRALTSVPAPAVGA >gi|292820591|gb|ACYT02000045.1| GENE 26 32873 - 34099 812 408 aa, chain + ## HITS:1 COG:BH0605 KEGG:ns NR:ns ## COG: BH0605 COG1721 # Protein_GI_number: 15613168 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Bacillus halodurans # 91 292 66 277 385 65 27.0 1e-10 MEGKRSDSADGVGHRREQTGRPRPLAALAGAVTPIGWAVIVLIVAGVTVAAVFQWVEALA CALAGAVALVLAATRVAWKPPHLVSIRVPNERIVAGQTAVGEITVRNERNRPVRSGIIEL PIGSGTGEFVVPPLGARRSWDEMFLISSRHRGLINVGPARSVRSDALGLLRRVRVWDEPV ILHVHPKTVRVPFDATGFQLDVEGVSTGRLSSSDVSFHALRDYEPGDDRRAVHWQSTARL GKLIVRQYEETHRSHHVIVLDTSRDVWDHDSFETAVSVAASLGLASLRESRPVSVTTTEA WLPSGSAMRLLDTLSEIKAGSGGDLALRVREAVAERPGISALTLVVGPKVSDVDAAHLAR LAPIDVPVSIIRIGGAEGRTRRDLGRGVLLDCSRLEDLPRIIVAGGLA >gi|292820591|gb|ACYT02000045.1| GENE 27 34096 - 36771 1974 891 aa, chain + ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 453 672 343 575 721 73 30.0 2e-12 MTTSVDTKPRAQRVESQAQTRPTSPVATEVRASSVPSASSRDGDRPNVGPQGPRPKTTRS RLLTVTQRFATYRSSLPIWSLLVLAFLFVGPVAAFEPVFGGGVGAIAAGAGVACGLAIAA ASTYWRWDALTTVLSVVVTYFLVGSGAALRSEALYGFLPTGQTLQVMVLGSFRAWKDLLT LTPPVSVYSGPALVPWMCGLVLAVLAGLITARAGRAVPGSIPVVAMAVIAVFFGLARYPL PLSLVLVWWALVVAWWASAAQYQRITLGQDVLVGRASSPGGEATVGRRSRSTVYVGRRAL GAIVVLAVSVGVAMPAATVLGSSRGRLVGRDLIQPPIDVQAFPSPMSSFRHYTTDLKDET LLTVSDLPENQRVRIAAMDVYDGTTFGMSRKRDDGHTGYIPVHTTIPGRAQGTSVVTLTT TGLSGPWVPVLGTPSQIAFTGGQAARQKKGLHVDTWANAALTTGPVGSMSYNVTTDFVAP VRDEELANLVAVSVTLEDKNVPDGLADRAAELTQNASTPLAAARAIEHYLSTNGYYLNEN TRFSRPGVRSDRLERMLASDENLIGDDQQYTALMALMLHQLGINARVVMGAYPEGGSQGG AATLRGSDIRAWVEVEFSGGVWGVFDPTPPRDHVPQTQVPKPRSVPRPQVLQPPEPPEPP AEMPPPTRDQNADPLKPPEAGLPWGLIAAGSGAVILLAMPPLAILVFKAGRRRRRRRASP GEALVGSWDEVVDLAADYGLRIDLGRTRQETAWALSSEWELGQDPGDPFALVTDEVNLGE DGATSSSDSAGVADKGRYVIDGWSRFGGDVPAPVVIARFADVANFASNGFSRDSARAAWA QVRDLRDQVSKRAGFLARVRRAFSLRSLRMRRKLRRDTPLVGRTMREENDQ >gi|292820591|gb|ACYT02000045.1| GENE 28 36768 - 38300 816 510 aa, chain + ## HITS:1 COG:Rv3080c_1 KEGG:ns NR:ns ## COG: Rv3080c_1 COG0515 # Protein_GI_number: 15610217 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis H37Rv # 11 288 15 298 340 132 33.0 2e-30 MSPAVAGMRGPDIPGFRWVRPLGQGGFADVFLYRQELPSRDVAIKVVRAQGDARGTKELH READAMTLLSGHPSVVELHGVGTTADGRAYLVMEYCPVADLLTQVRARPMSLEDALDTMI KICGVVETFHWQGYVHRDIKPSNIMMDAYGKPVLADFGVASKVGALEVGAFDGFSVLWAP PEQQDVTAPASPLQDVWALASTTWTFVTGRSPFEDPIGDNSAASIANRVQRGRMRGLGRA DAPCELERVLRAAMAVDPAERTPSAKEFGEGLQRVQEEIGYPRTEMEIKEKRSKASVTVA GDQKTRLRGAPVIDPDATRLRSATYSFEGGAGSGGVEAVADSWKSDRSGDVDEVSARRVV EGSLEAKKTISPLAGVLLALLAALIAAGLVAGILRGQGSFTRIAPDPEKTSTSAAPGDAL GVAPPKVSNLAGEYSDGTVAWTWTAPEGPAPSDIVYAYEGSGAAGKSRGRVESTSVTVDG ASGENCIEITTVSRSSGRMSDPVRVCVEVP >gi|292820591|gb|ACYT02000045.1| GENE 29 38437 - 39309 333 290 aa, chain + ## HITS:1 COG:DR2513 KEGG:ns NR:ns ## COG: DR2513 COG0631 # Protein_GI_number: 15807498 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Deinococcus radiodurans # 15 250 12 242 353 92 37.0 1e-18 MSLEEHAEWSAVRWGASTDIGPVRSENEDSWLAVPPVFAVADGMGGHLGGAQASSKAVIT LREFLSPQRLGNRSVDLVDLSVAIDAAATAVASLASVDNPMSAPGTTLSGLMVLRTAEGP YWLSFNVGDSRAYVVGGGGIRQLTHDHSALQEARDLAATSGAPRVIPPANVVTKALGAGQ VGSVKADYTIMPLEDGDRAVICTDGVHGVLSDSRIHEVVADGDGPQGTADRLVRASLEAG TRDNATAVVVYAGTKSRVTLTTNVMNRMIQPVRPASIETARRVPRREGGN >gi|292820591|gb|ACYT02000045.1| GENE 30 39309 - 40634 1536 441 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191205|ref|ZP_06609138.1| ## NR: gi|293191205|ref|ZP_06609138.1| putative FHA domain protein [Actinomyces odontolyticus F0309] # 1 441 1 441 441 755 100.0 0 MLQIGRFLCRGQGAMLVTGPLGAALAPLDFADSAADVVWGRADTQAWLSHVQAEKGDVLL LDCAGEQPYLTVLGNIQLRMRAAGQITEQVWTDPIWAWPFNPGEWQTFEATIVDGDEVTW MVPAADRVEAGEIRIGRALDEVEALASMPVDTMGFLINPDIPDRERRARREAREELPEPS VHSASVDLAAVEAQFLAATSNGPVSLCPSSRNPDDEKAPAAPEVSDEQVEEASHEEAPAK DAEQPSGELYIVADAEEPPVDTAESAERAGGFGESGAPASSEPASGEVVESPAVPEAMSA EGLADLGAETDTEATILRLSPTNSGPAAPVAFLIHGGTVPVEVSRDVVIGRDPDARALTG RPVATVLRVPSPQTEISRSHCAVMMTTPGSWALMDLGSANGTVLRHADGSFQDVTPMVTI ALNDGDLIDVGEGTTIEFRVR >gi|292820591|gb|ACYT02000045.1| GENE 31 40867 - 43584 4090 905 aa, chain + ## HITS:1 COG:TM0272 KEGG:ns NR:ns ## COG: TM0272 COG0574 # Protein_GI_number: 15643042 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Thermotoga maritima # 3 887 4 867 881 855 53.0 0 MVKYVYDFSEGDKSMKDLLGGKGANLAEMTKLGLPVPPGFTITTEACRAYLKESTVPESL ATEVTTALRGVEDQMGRHLGDPSDPLLVSVRSGAKFSMPGMMETVLNIGLNDESVLGLAA VSGNERFAWDSYRRLIQMFGKTVLDIDGDLFSGALDALKAERGVKGDTELTAEDLKGLVD TFKGIVKEQTGKDFPQDPRTQMDMGIEAVFRSWNTERARIYRRRERIPHDLGTAVNICTM VFGNMGDNSGTGVCFTRDPSSGHSGVYGDYLENAQGEDVVAGIRNTLPLSALKEINKPVY DELRAIMRKLETHYRDMCDIEFTVERGKLWMLQTRVGKRTAAAAFRIATQLLGEKLITRD EALGRVTGDQLTQLMFPQFDAKAEKELIARGMAASPGAAVGKIAFNNAQAVEAAEKGIKT VLVRRETNPDDLPGMVAAEGVLTARGGKTSHAAVVARGMGKTCVCGAESLVIDEAAGTVT IGDLVLTSEDTIAIDGQTGEIFRGEVPVADSPVTTYLADGLEAGIAAAGEDQGTRELVEA VDKLLAHADKVRRLRVRANADTPLDSKRAIAFGAEGIGLCRTEHMFLGERRPLVERAILS APESDERQAAFNELEKLQKQDFLEMLEVMDGKAMTVRLIDPPLHEFMPALIELETKVAVG KATGTLDPADEAMLVEVRRMHEQNPMLGLRGVRLGIYLPGLFALQMRALCEAAADLVARG LNPRPEIMVPLVGSVRELQLVREEGEGIIASVAAARGVDLSGVSIGAMIELPRAAMTAED LAEEADFFSFGTNDLTQTVWGFSRDDVEGVFFPQYIEAGIFGVSPFESIDVHGVGTLVSE GVRRARSTKPNIKLGVCGEHGGDPASIHFFHNVGVDYVSCSPFRVPVARLEAGRAAVEDH VDMTA >gi|292820591|gb|ACYT02000045.1| GENE 32 44417 - 45226 976 269 aa, chain - ## HITS:1 COG:no KEGG:Mlut_21550 NR:ns ## KEGG: Mlut_21550 # Name: not_defined # Def: CAAX amino terminal protease family # Organism: M.luteus # Pathway: not_defined # 85 262 111 291 317 79 28.0 1e-13 MSTDPSTHCAPTTPVSTGATPTPSPLPTVTATDNAAKASFPMRPARPSRADWVRIAIFGI PYATFFLLGTVPTSIIPESWNVTAVNIVLDSIFLVMVLAFFGREFFPAFSYFRTRPVLKI ALLFGMWFLLTIVQATLRISIYGTNPPIAQNQQAVMNALSEGALSIVFSFFVAIGVPMIE EIFYRHILIGKLSAFAPTWLVASISAILFAYMHCYQWQDLLAYLPISITLTLVYVKSGKN VAYSWAFHALNNSIMVGLIFLLQSTGVTP >gi|292820591|gb|ACYT02000045.1| GENE 33 45737 - 47374 2380 545 aa, chain + ## HITS:1 COG:PM0453 KEGG:ns NR:ns ## COG: PM0453 COG0672 # Protein_GI_number: 15602318 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Pasteurella multocida # 41 530 145 627 634 246 32.0 1e-64 MAVLRVHLSNIGQRLSRVLIVAVMAALAVAMFASPSRAADQTWSDVSTTINGLIDEGVST FKAGDAKGGKDKVNDAYYKHYEITGMEKQVMARISGSRVSQVEMEFSLLKKAMSDADSAG VDNHATTLKQYMVEDGASLDGVAPGSAAQASSDDYSPGAWGEVAKTINGILEDGVNAYKG GDAKAGKDKVNEAYYKHYEITGMEKQVMSRISGSRVSQVEMEFSLLKKAMTDDDSAAVDQ HLSTLTNYIREDANSLDGYTGKAADKTTDSSGTSPWIAQFLPSLLVILREGMEAILVVAA VLAYLAKAGHKNKAPIVWGGVVLAFGLSIGLAFLFSYVTSLAGANQELLEGFAALFAVAM LIWVSNWMINKSSNKAWDEYIKKQTDASLSSGSLLGLAFISFLAVLREGAETILFYVPIV TAAGDKVHYVWIGLAVGLVALVIIYLLIQFAAVRIPLRPFFTITSLLMAFMAFTFTGSGI GELQEADVVSLTPISGFPTIDLLGIYPRVENLAAQAIVLAIIVGLYFFGKARLAREAAAQ SRAGE >gi|292820591|gb|ACYT02000045.1| GENE 34 47430 - 48062 1000 210 aa, chain + ## HITS:1 COG:TP0971 KEGG:ns NR:ns ## COG: TP0971 COG3470 # Protein_GI_number: 15639955 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein probably involved in high-affinity Fe2+ transport # Organism: Treponema pallidum # 46 203 34 199 204 140 51.0 2e-33 MKRSLFRVGAALATLALAGTLAACSNNSSSSSSEKPAASSSAAADSAAPAPGEDAGFEEQ PLGDEVHVGPLVVGGVYFQPVEMEPQVGTPAAESSMHIEADIAAAADNKLGYGAGDFVPG LTVDYAIKDKSGNVVQEGTLMPMNASDGPHYGLNLPKLDAGTYDVSFMIKPPSVWLLHTD KTTGVEGRFWTEPLVAEFPDWQWDPTAVSW >gi|292820591|gb|ACYT02000045.1| GENE 35 48198 - 49517 1836 439 aa, chain + ## HITS:1 COG:FN1355 KEGG:ns NR:ns ## COG: FN1355 COG4393 # Protein_GI_number: 19704690 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 169 437 25 294 298 157 33.0 4e-38 MLQQMSEATLTLLLTMLALGAVIRFMPAAGRGRRGKKVRSVAVWAGIGLGMVSSLALTII NVQAPKSVNRQTVGLFTLPVAIVLAVLFLAFIAVRSRRVRSLLPGDADDEARAASSMDTA VSGDTLVRIVGALYIAAALFRAVPTAMNQAVMMLSGGVEIYSTPVVLALVGYVLAWVLVC FVTWVSYRLCSWNNRVWPAAFILIALLANHALMIVRILKAKRWISIPKDAWNAMSWFINH EAVFTIAAGLALCAVVVLTWLASRSIPTVGANPAEGRLGRARSRLYKSMAGTAALGYLCG ALLITVGVAYGSQEIELSAPESFSVVDDQVSVNLADISDGHLHRFEYTTSGGVKVRFIVI QKSGSSFGVGLDACDICGPTGYYEKDGKVICKLCEVAMNIATIGFKGGCNPIPIDYKVSN GTLTVPISALEASASVFAK >gi|292820591|gb|ACYT02000045.1| GENE 36 49527 - 50804 1753 425 aa, chain + ## HITS:1 COG:FN1354 KEGG:ns NR:ns ## COG: FN1354 COG0577 # Protein_GI_number: 19704689 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 425 3 428 428 425 52.0 1e-119 MFVRMLRGALTRRGNRHLMIALTVALGACVATSMLSVMFNVGDKVNQELKSYGANIVVRP QGAAVLDDLYSTGEATESRSYLREDELGNIKTIFWTYNILDFAPLLSVSATDASGEHVPT TGTWFSHHLELATGESVETGLDKLRGWWGIEGSWPADDDESGALVGTTYAAAHGLGVGDT FTLTREGITREFTVRGILTSGDDADRGVYIQLAQAQELLEREGVVGSVEVSALTTPDNDL ARKAAKNPNSLSVSEKETWYCTAYVSSIAYQIEEVMTDSVARPVRQVAESEGTILEKTQL LMVLVTVLALIASALAIANLVTAGVMERSSEIGLMKAVGAKDKQIISLFLTETIVVGLVG GAIGYGGGLALAQAIGYMVFGSSIAFVPVVVGLVTVLVILVVLGASIPAIRYLLRLNAAE VLHGR >gi|292820591|gb|ACYT02000045.1| GENE 37 50810 - 51997 168 395 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 258 395 280 413 413 69 31 5e-11 MSRRAMFWRMVTSSILRRRSRVLIAILAVAIGATTLSGLVTIAVDVPAQLAREIRSYGAN LVVTPAGDVPITDEAVAAATAQVPASALVGSAAFDYETVTINDQPYVAGGADLEAVHAMN PYWYVDGEWPAATGQILVGEQVASTIDVKAGDTITVSQLDAGASSKGAQVQSGAPAPGLK VDPRTVTLTVSGILKTGGNEDGYVYMSRQDMSTLTGQTGAVSLAEYSIALEGDQLSAIAD AMNAANPDVHAQTVRRLAQSDTGVLAMLRSLLVVITVIVLALTMIGVSTTMIAVVTERRN EIGLRKALGATARSITREFMGEGVMLGLIGGLLGAGAGYGLAVLISTSVFHRSISLHPVI LLGTVACSILIAVLACLPPVRRALAVDPALVLRGE >gi|292820591|gb|ACYT02000045.1| GENE 38 52006 - 52791 278 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 214 1 226 329 111 32 1e-23 MTTSTATPASSAPTDALLSLEGVSKIYGDLHALDNVSLEIPRGQWVSIVGPSGSGKTTLM NIVGAMDTATKGTVMLDGHDISDLTADELTEVRCRTIGLVFQQFHLIGHLTALENVMVAQ YYHSMPDEKEALEALDRVGLADRATHLPRQLSGGEQQRVCVARALINYPKLLLADEPTGN LDETNEEIVLDLFNQLHQDGTTLMVVTHDALVAEQGQREIRLDHGKVVKETWHDHDFEQR ASGLVLPGRDGDARSGKDKVR >gi|292820591|gb|ACYT02000045.1| GENE 39 52788 - 53363 921 191 aa, chain + ## HITS:1 COG:FN1351 KEGG:ns NR:ns ## COG: FN1351 COG4939 # Protein_GI_number: 19704686 # Func_class: S Function unknown # Function: Major membrane immunogen, membrane-anchored lipoprotein # Organism: Fusobacterium nucleatum # 19 158 4 139 140 67 33.0 1e-11 MTTPTPVESRSRWVAPASYAVLGALGATILAACTPNTGLDMTKPMSDGTWTAQSNADDQG SIGTITITVEGGRITATSYETTLADGTDKGAEYGKNSAGEVFNEDYYKKAQAAVASYQEY SDNLTKVGDPAKVDVITGATVAHQQFVQAAIRAIAAAQGVSPDGADDINIPGLNDATKDG DLDKDLGGSDG >gi|292820591|gb|ACYT02000045.1| GENE 40 53401 - 54564 493 387 aa, chain + ## HITS:1 COG:TM1553 KEGG:ns NR:ns ## COG: TM1553 COG1477 # Protein_GI_number: 15644301 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Thermotoga maritima # 90 373 108 331 352 80 28.0 7e-15 MAESAGVAPTWRSSFPAMGTRVDIIGWGGDGMAIVNAVVGVVARHEDMWSVFRPSSEVSR LNAAVASTGCGGGASRCGADSAVAGLGLVVSEETDRLLRDALALAEATGGAFNPLIGPLV AAWDVKSMRAAYVAGAPLPPAPSERVVEAALRASSWGLLSRVGERRWVMGLPGESVGGVD APSPSLDLGGIAKGCTADACRDLAVAMGARGVLVSVGTSSVSVFGTRADGSSWRAGLRDP QGGPTSVAGIVELPAGGMASLSTSGDNLGPLGGVRAVCAGSAAGSAVGPLVGPAADRRAR ETSRETSVGGGRVFDHHIIDPRTGYPAHAGVRQVSVVASSGVLAEALSTALLVDPSIDVS DVVARWSRLSGALASTKVVGIVRAEQG >gi|292820591|gb|ACYT02000045.1| GENE 41 55010 - 55228 101 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRVYRCLCCGCCGVCIRCGCWYSCLAVCGGWCLIVCCAVGAPCGAAPVAGRCTRYEALH PNRKGAMLTDRV >gi|292820591|gb|ACYT02000045.1| GENE 42 55416 - 56006 797 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191218|ref|ZP_06609151.1| ## NR: gi|293191218|ref|ZP_06609151.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 196 1 196 196 359 100.0 5e-98 MYFFVAVLLWLVFFFAIWYYKKLVLWVLLSPDYLLIIGGVGAFTVDHMWWLTSTRQAHYV WATLAMMAVGFGYHALNRWLYLRSAHTYKIVSFPFVVASSLVIMLGLVLKIADEVAPRLA DNPTVQHVIYIIIGIVLAIVAWMKRQSTMARLFPPEPSLVINGDVTINGGEVTAQAPEAP ESPCTHPGSDTGVASY >gi|292820591|gb|ACYT02000045.1| GENE 43 56005 - 56256 97 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTVLYLTDWYVCGVFSPVRTGAVAAFGQLGSPCQFRQRAHLARRQQRRQVDATAVRQLRG LGTAREAIRQVHGLRMCRQRGQQ >gi|292820591|gb|ACYT02000045.1| GENE 44 56125 - 59139 2971 1004 aa, chain - ## HITS:1 COG:Cgl2262_1 KEGG:ns NR:ns ## COG: Cgl2262_1 COG0277 # Protein_GI_number: 19553512 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Corynebacterium glutamicum # 21 501 29 504 544 367 45.0 1e-101 MSESFLTDLRTLIDVDSSRGTRARYSSDAGLTRIPPLAVAFPRTPEQAIAAFDLARAHGI PLTARGGGTSCASNAIGPGLVLDFSRHMNRVVSIDPEARTATVEPGCVGSTLQAAAGTHG LRFGPDPSSQNRATIAGMVANNACGPHATAWGRTCDNIVSLDCVDGQGRRFTATTGHDGA LSDVPGLASLIDSNLAPIRTELGRFKRQVSGYSLEHLTPEGGRNLAAMLAGTEGTLVLIL SITVRLVPLPEAPVLAALGYRSMIDAADDVPALLAHSPLAVEGMDRRLVDVVRAHKGPGA VPALPEGDGWLLVEVGAPGEDLEVTLERARALCADSAAVDTVVYPPGAQASALWRIRADG AGLGGRTPPDGAGGGDQQAWPGFEDAAVPPENLGDYLRDFTALMEEFDIDGLLYGHFGDG CVHVRLAMPLDTPKGVAHSRAFLQSAARICAAHGGSVSGEHGDGRARGELLHFMYSPEML DLFARVKHVFDPGNLLNPGVLAAPMDEAEAASRSKARTAGFAGNSVELQPGVDPLDRNLR RVAAHPMPADGGFAFTHDGGDFTAAVHRCTGVGKCRAGVSGTFMCPSYLATRDEKDVTRG RARILQEAANSQLVKAIDSPEVLEALDLCLACKACSADCPAGVDMARYRSEALFRTYRGR LRPLSHYTLGWLPRLTRVTARVPGLAAVANALMSVAPLRSMAFRIIGLDPRRGMPDLQSG TFTAWARRRSLLATSVPPHSDPGTSAREREATTASSLPDSPILSGPRDPGGRPYALVWAD SFSQTLDDTGARAVVNVLEANGFAPIVAPDACCGLTWITTGQLTGAKKHLTSLLGALAPF AASGIPIVGVEPSCTAVLRDDLADLLPDDPRSALVSGATHTLAEVLSAVPASARHLPSLE GVEIVAQPHCHHYSVMGWDTDQALLESLGARVTRLEGCCGLAGNFGMEAGHYDLSVAVAS HSLLPTLSAHPEAVYLADGFSCRTQAAQLADRGGVHLATLLASR >gi|292820591|gb|ACYT02000045.1| GENE 45 59267 - 59500 194 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508537|ref|ZP_02044179.1| ## NR: gi|154508537|ref|ZP_02044179.1| hypothetical protein ACTODO_01038 [Actinomyces odontolyticus ATCC 17982] # 1 77 1 77 77 95 94.0 1e-18 MGRKDLRIVEYSAPEPRVPASEETRRELSPYRLDTHSWPRMYPHPDQTVSPHFPPVERMP VPVTPFPNLFRDDPEPA >gi|292820591|gb|ACYT02000045.1| GENE 46 59839 - 61701 1630 620 aa, chain - ## HITS:1 COG:no KEGG:Svir_19530 NR:ns ## KEGG: Svir_19530 # Name: not_defined # Def: alpha/beta hydrolase of unknown function (DUF1023) # Organism: S.viridis # Pathway: not_defined # 1 565 18 531 533 138 28.0 8e-31 MAISWADIIAWETGPLDSIGSDLFEASSGLRSAYEQGEGALQAVQSQGNAVTAMRATTIS NLASLERALTNVNGALIAIEGARDGVATVMANINALQAYAEANDCTILSDGSVTGKGTEN EQGEPSIALASISINIGKILKQADQVDTDLYHALSDINTDTYTDGDKKDNKVAGVPDHPK KDWTPSQVAAWWNSLPEKQQKHLIDHCPDEVRHLDGLPAVARDRANRNALNGYFDNKGKY RPGALADAEQAVKDAQKEYDDARTRLSGEPRSGHMNSEELAAKEKLDRAKEAYQDLVVIK SQTDPSYRLTHGLAPAYLLDFDYDEKYKRTTAIVSSGNPDTATHVSTTVPGIGTNVRGDL GYYMKFNDRLRAQTAHAGVDPGNVATISYLGYVAPKNSGLDLVQAADIGYADRAAPKLAR FEEGLRASADARGHQFTNTLLGHSYGSTTSGKSVPMMAAGTIDNFVMFGSPGSGVRNIDA YGLPEGHVYESSTPYGDAVQGLGPDASYGTNPRKLEGITHLSGDTTGSSNYAVATGALSF DNHMSYFDEGTRTSQDFANIVAGGKQTTDEEWEALQTAQGKITELDRNPWMKQYMEPNEA KTPPPTTPDIMPGDPLARHS >gi|292820591|gb|ACYT02000045.1| GENE 47 61705 - 62049 266 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508539|ref|ZP_02044181.1| ## NR: gi|154508539|ref|ZP_02044181.1| hypothetical protein ACTODO_01040 [Actinomyces odontolyticus ATCC 17982] # 1 114 1 114 114 182 99.0 7e-45 MPDLDIRQGDLEKFSTELRELSASIATYTTLPLNLSQVQSAMPGGSAYKQAQYAGEHMED QLTALKTSLEGLADNVQAAATEFQATEDINQQSLQQIMASTPEPCPPVGPAKGE >gi|292820591|gb|ACYT02000045.1| GENE 48 62276 - 63940 1786 554 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_10934 NR:ns ## KEGG: HMPREF0573_10934 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 1 540 1 547 549 217 36.0 9e-55 MALFEFEDGHLVPAQFGYPVAQDLGPDLVDAICQQVLQIVSRPLFPVTWRDMTGQDDEET PRLTALDVTGQIVSVEILKELDSETLITSLSRLAEVASISWSDLAAEYPSGPEGFRAGWA QFRDSMPPAVGPGPRLIMVAGDIDPSVRPALSVLATSGVEVHLMNLRQMSNGRLFLDVNA VGPRLYGHAPQLLASATAAPEITVATEQPAPFEESAPAESAIPAPAKEGAEALNEEDSET PTTLPTPKVAPHLREVFTYPIDEEPPAPWKPAAEESSTEDFSDEQPVSETAEHAEHTVHG DDSEDAEAELADELLDHEDNVAEAREHEATEENADDVADESAVDAHDDADAPVDESHSEE APEQADAQQADDACTDDAQQADEQQTPEEEKPRWERPAHMSRRATRRAREESSELNDDGA TDAATASSVDRSEESPEVAQARAEGLPVLGRDETGLRTLAEILGQDTPLVARSELGLPAD LVLAASGAISGAGLTYPSLDTLLTARGLGHIDAWGQVRIGDRLGPTLAEALDEINREIVR EYAQAPRGQHSAKH >gi|292820591|gb|ACYT02000045.1| GENE 49 64033 - 65178 1244 381 aa, chain - ## HITS:1 COG:Cgl1956 KEGG:ns NR:ns ## COG: Cgl1956 COG2267 # Protein_GI_number: 19553206 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Corynebacterium glutamicum # 54 378 6 332 341 160 34.0 3e-39 MSVTSDPTPGDEPIPDTSGLPDLSRVETPASSPEGIPERDVMAPWGEDGPPGLQWRADIL GDGYESRTIELLDDAEGPCVATLVRATPPADARMTVLYLHGRNDYFFQTEMAQQLVDAGA AFYALDMRKYGRSLRPHQTIGYADDLSAYDEEIGEAIEIIRSEREDEPIVLMGHSTGGLI ATLWAHRHPGVLAGLILNSGWLEMQSMAAWRGAMAPVIGRIASRNPMWEVPSGGTGHYGR SLAGRASSELPIPEGLSAEDPSVAGWPIIQEWKRPESYPVPASWLEAIMAGHDTIEKRVH LDCPVLSMVSTSAYFEEEWCERVFTSDTVLDPTVIAQRSLGLSDLVTIARFPGKHDLVLS DAPVREAVYATMRGWLDAFVH >gi|292820591|gb|ACYT02000045.1| GENE 50 65263 - 66420 1606 385 aa, chain - ## HITS:1 COG:Rv3341 KEGG:ns NR:ns ## COG: Rv3341 COG2021 # Protein_GI_number: 15610477 # Func_class: E Amino acid transport and metabolism # Function: Homoserine acetyltransferase # Organism: Mycobacterium tuberculosis H37Rv # 28 373 21 368 379 330 51.0 4e-90 MSRHNLPPAPTSGAWREGDPVAFRKFANLGAHRLENGEILPSVTLAYETWGELDEASSNA VLILHALTGDAHVCGEAAPGQPTPGWWEQIVGPGRIIDTDRYYVVAANVLGGCQGSTGPA SPAPDGAPWGSRFPVISTRDQVYAESRLADLLGIDEWSIVVGTSLGGHRAIEWAVSYPER VRRLVVVASGAQTTADQAAWTHTQIRAIELDPAWRGGDYYAGPGPTAGLALARQIAHTTY RSPSELDERFGRIPQNDEDPLHGGRLAVESYLDYHGEKIVRRFDAGSYVALCRTMLSHDV GRDRGGVVEALKAVTARTLVVAVDSDRLFFPEQVWQMAAGISGAFYREIHSDHGHDGFLI EHGQLTALLDEFLNERIPSRASSFA >gi|292820591|gb|ACYT02000045.1| GENE 51 66530 - 67855 2162 441 aa, chain - ## HITS:1 COG:MT3443 KEGG:ns NR:ns ## COG: MT3443 COG2873 # Protein_GI_number: 15842936 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Mycobacterium tuberculosis CDC1551 # 6 441 16 441 449 466 59.0 1e-131 MTANDWSFETKQIHAGYNLDPATGATALPIYQTSSYAFADTAQAASRFALQELGPIYTRL TNPTTDGVAARIAALEGGVGGLLVSSGQSATALSILALAVAGNNVVASPSLYGGSVTLLK NTLGRLGVETRFVADPLDPEAWRALADDKTVAFYGETIPNPQGDILDIEPIAAVAHEVGV PLIVDNTVATPYLIRPIEWGADIVVHSATKYLGGHGTTIAGAIVDSGNFDFASQPERFPL YNTPDESYHGLVYARDLGVGGALGANLAFLLRIQTLINRDLGAVTSPFNAFLISQGIETL SLRIERHVSNALAVARFLEAHPDVESVNYAGLESSPYYELGKKYAPLGTGGLLSFVIKGG YEAGRAFADGVQLLPVVANIGDAKSLVIHPASTTHSQLTEEELVKAGVAPGTVRLSIGLE NIKDILADLELGFDAAHAATA >gi|292820591|gb|ACYT02000045.1| GENE 52 68315 - 69646 1580 443 aa, chain + ## HITS:1 COG:CAC2663 KEGG:ns NR:ns ## COG: CAC2663 COG0791 # Protein_GI_number: 15895921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Clostridium acetobutylicum # 307 433 128 248 255 97 42.0 5e-20 MRRRGTIRMGLTAIAACALLVLPQMAQAAPSEEEIAAAQAAEEAAKMSVAQIEVKLAEVS ARAATATQNAQIAGEDLNEANIALSEATETATRASSEADAAEAAFQEGKQQIASVAQAAY RGGGGTLDSLAPYLDSDGLRTVETKQAGINSFSSSAEAKMQNVAALEQVAKVTRDAANSA LANQQAATDAVKARTDAANEAAAVAQNEAAIVAAQRGAYVQELATKQNTTVDLINQREAA LEAERQEAARIAAEQAAAAADAQRQADAAAAAAAAAAAAPSQASSSSDDEDDDDDYSYSA PSYSAPSYSYEEPSYSAPSYSGGGADTAIATAKSYLGVPYVWGGESYGGVDCSGLTMLAW ESAGVDLPHLSRAQYSYGTHVPIGSMEAGDLIFWSSNGTQSGIYHVAIYLGGGQMIEAPT FGVPVRITGVYSWGSIMPYAVRL >gi|292820591|gb|ACYT02000045.1| GENE 53 69718 - 70212 746 164 aa, chain - ## HITS:1 COG:ML0210 KEGG:ns NR:ns ## COG: ML0210 COG0221 # Protein_GI_number: 15827013 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Mycobacterium leprae # 1 158 1 158 162 210 67.0 9e-55 MEFDVTIEIPKGNRNKYEIDHVTGRIRLDRMLFTSTRYPDDYGFIDDTLGEDGDPLDALV LLEEPTFPGCVIRCRALGMFRMRDEKGGDDKVLCVPASDQRASWRTEIDDVSEFHRLEIQ HFFEVYKDLEPGKSVEGAHWVGREEAEAEIRRSYERLKEHEGEH >gi|292820591|gb|ACYT02000045.1| GENE 54 70315 - 71670 1657 451 aa, chain + ## HITS:1 COG:MT3729 KEGG:ns NR:ns ## COG: MT3729 COG2027 # Protein_GI_number: 15843239 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Mycobacterium tuberculosis CDC1551 # 84 420 90 430 461 96 31.0 8e-20 MHRTSMGAIVSASAALVATAALVGAGCSTQTATPADAPTASTLEPATISGDAKGAKLPVS AEDVQALWAPVAAAAAEGGYTAWGTVVDAETGEVLLDAAAATPHTPASTTKTLAAFSALH HLDPTATLTTSALLGADNQTLYLDSEGDLLLGIGTSDEVEVSGRAGLQTLAKDTAAALAQ RGITSVTLNWRGSLFEGASHLSSWDAQEVGSYEGHVGPMAIDAGRTYEGANAFYSDAPGR VAEVFSQALSAEGISATLGEAGDPPAGAGAVAQVSSATMGEQLRWMLAHSDNTLADQYCR FAARAAGAPSTYDGATETVRKTLTEAGVPTEGLTLEDCSGLSSNDKISAHTLVGVLKASY EGTGTEANTMRLLPWAGLVGTLSKRMTEELAAGNVQAKTGALQEVTSLSGSVMTKSGRVL LVSIGHDNVTEGAYATRGHLDAFEEGLAGLD >gi|292820591|gb|ACYT02000045.1| GENE 55 71675 - 72517 979 280 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191232|ref|ZP_06609165.1| ## NR: gi|293191232|ref|ZP_06609165.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 280 1 280 280 484 100.0 1e-135 MDMPFGPRNVAGVLASLSYAGPSASRVGASAVVARLRRSVAWSDRRLAELSTLPEASEKV AGSSTLVVDRRGLIRSVGSLLESFEDARTPKVLAAEAVILRALAKDATGIWDVRFGRRIL VAPNVLADAQRYALDQTDWCRWVSLCTGLRGVHLTHAPHLVPYIADLMRSLPERSDELVR IVLLLDALPTAEMEVLTPRDLPSIQWLRTHRAHAGGVGLVRACAAAGMPLAGVEALQAQT EGFARTVVREDAIAQLLSSVEALPSAREYAEPAAWLARVR >gi|292820591|gb|ACYT02000045.1| GENE 56 72507 - 73152 370 215 aa, chain + ## HITS:1 COG:ML0213 KEGG:ns NR:ns ## COG: ML0213 COG0037 # Protein_GI_number: 15827015 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Mycobacterium leprae # 43 206 30 185 323 87 45.0 2e-17 MCADASRLVGANPRGPLRACSLAVRASLTSFIDKVGAPPALVVGLSGGADSLALALTTID VAARAGIPVVTVTVDHGLRAGSGEEARCVADRAESLGARAVVETVSVEGPGGPEGSARDA RRAALRAVAQREGAPILLGHTMDDQAETVLLRLARGSGPSSLRAIAPVSRDDDGVTWLRP LLGLRRTDTEQACAQAGLTPIQDPTNDIDGPWRAA Prediction of potential genes in microbial genomes Time: Tue May 17 06:49:49 2011 Seq name: gi|292820584|gb|ACYT02000046.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.22, whole genome shotgun sequence Length of sequence - 5156 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 2, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 427 308 ## Jden_2106 tRNA(Ile)-lysidine synthetase 2 2 Op 1 11/0.000 + CDS 600 - 1154 962 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 3 2 Op 2 4/0.000 + CDS 1180 - 3216 1224 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 4 2 Op 3 4/0.000 + CDS 3213 - 3782 672 ## COG0302 GTP cyclohydrolase I 5 2 Op 4 15/0.000 + CDS 3784 - 4650 729 ## COG0294 Dihydropteroate synthase and related enzymes 6 2 Op 5 . + CDS 4643 - 5156 762 ## COG1539 Dihydroneopterin aldolase Predicted protein(s) >gi|292820584|gb|ACYT02000046.1| GENE 1 2 - 427 308 141 aa, chain + ## HITS:1 COG:no KEGG:Jden_2106 NR:ns ## KEGG: Jden_2106 # Name: not_defined # Def: tRNA(Ile)-lysidine synthetase # Organism: J.denitrificans # Pathway: not_defined # 2 120 211 330 339 63 41.0 2e-09 AIPALASALGVDPVPALARTAALCAADDDALTQWASAIAASVAPGAEHDSETGHPSLAVS GLLGAPRAVRTRALREAARAAGIRALSSTHVDALDDLVVAWRGQGPIDLPGGTASRVGRG AHARIAFAAREVGAPTAPDPA >gi|292820584|gb|ACYT02000046.1| GENE 2 600 - 1154 962 184 aa, chain + ## HITS:1 COG:CAC3203 KEGG:ns NR:ns ## COG: CAC3203 COG0634 # Protein_GI_number: 15896450 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 6 182 1 177 178 191 49.0 7e-49 MDATDMGNDLKEILVTAEDMDRRLAEMAEQIDRDYVGEELLIVGVLRGAVMVMADLSRKL HTPLEMDWMAVSSYGSGTKTSGVVRILKDLDQDVAGRHVLIVEDIIDSGLTLSWLQANLL GRGASSVKIATALRKPEAAKVDVDVAYVGFDIPDEFVVGYGLDYAEKYRNLPFVGTLQPH VYNN >gi|292820584|gb|ACYT02000046.1| GENE 3 1180 - 3216 1224 678 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 125 614 105 593 636 476 51 1e-134 MNEKIKNKRPSLGWVMVPLIMLLAGGWFVWGFFAPRAVTTSEGLALISGDTVERVVLNEG TQQVNLTLTENYVHQSTGSGDRTADLGKNVYFTYSYVQTKEILDTVADKAPAKGWNAMRP QSGILGGVVQLLISLMILGVAFYFIMRSMSGSRMMGGFTQSRAKEFNQERPDVTFADVAG EDEAVEELEEIREFLASPDKFHKVGARIPRGVLLYGPPGTGKTLLAKAVAGEANAPFFSI SGSEFMELYVGVGASRVRELFERAKKNAPAIIFVDEIDAVGRHRGSGIGGGNDEREQTLN QLLVEMDGFDERANIILIAATNRPDILDPALLRPGRFDRQIAVEAPDLKGREAILKVHAQ GKPLTEQVDLRQIAKRTPGFTGADLANVLNEAALLTARSDMQFIDERAIDEAIDRVIAGP QKRTRVMNDHDKAVTAYHEAGHALAAAALNYTDPVTKVTILPRGRALGYTMVMPTEDRFN KTRNQLLDDLVYGMGGRVAEEIVFRDPSTGPANDIQQATKTARAMVTDYGMSDRIGMVKL GDADTEAFGHGSGEGPRSFSDETAAIIDEEVRRLLDNAMREAWRILSENRAVLDTLASRL LEEETLDEAQLAEIFKDVVKAPERPVWNYQSDAAVPGVVLGHPVGIKAEDELKPVMEEDA EVVPTDGTDASGVEGEQA >gi|292820584|gb|ACYT02000046.1| GENE 4 3213 - 3782 672 189 aa, chain + ## HITS:1 COG:BS_mtrA KEGG:ns NR:ns ## COG: BS_mtrA COG0302 # Protein_GI_number: 16079335 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Bacillus subtilis # 8 181 9 183 190 226 62.0 3e-59 MTYDPAGVEKASRDLLVAIGEDPEREGLVGTPDRMARAWREMCKGLTEDPREHLHTQFHA GTDELVLVRDITFFSVCEHHLLPFYGRAHVGYIPRGGVVTGLSKLARVVEGYARRPQVQE RLTAQVADAIDEILDPQGVIVVIEAEHMCMSMRGISKPGSSTVTSALRGIMSDGATRAEM MALVLSGSR >gi|292820584|gb|ACYT02000046.1| GENE 5 3784 - 4650 729 288 aa, chain + ## HITS:1 COG:alr4386 KEGG:ns NR:ns ## COG: alr4386 COG0294 # Protein_GI_number: 17231878 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Nostoc sp. PCC 7120 # 31 273 17 264 287 187 44.0 3e-47 MSALPLPAAPASSLVPPPPALPGGLSLPSGRTAIMGILNVTPDSFSDGGRYTDVAAALRH ARAMVAAGADLIDVGGESTRPNSTRISADEEWARICTIVESLATDGVIVSVDTLHASTAR EAARVGAAIINDVSGGRWDPEMNAAVAESGCAYVVQHYRALPGMPGEHFDYGDDLVGTLI ERVGSQVHDAIDAGVTADKIVVDPGLGFSLTGDQCWQILRELPRFLQGGYPVLVGASRKR FVKALDGDVDANSADIAAYCAAAGAWAVRVHDVAATVAAITRKETDVD >gi|292820584|gb|ACYT02000046.1| GENE 6 4643 - 5156 762 171 aa, chain + ## HITS:1 COG:Cgl2637 KEGG:ns NR:ns ## COG: Cgl2637 COG1539 # Protein_GI_number: 19553887 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Corynebacterium glutamicum # 8 117 5 117 130 83 42.0 2e-16 MTNRRVIIALKGLGALANHGVYDFERDRNQRFSADIVMWVETAGTADDIAATVSYADIAD EAMAVLTGTAVDLIETLAETIASHVMSHEGVVGTEVTVHKPDAPIDHPFADVSVTVRAGQ TDAMPLSLSLKGVYEAEDGSVLTGEIEAYGRAQAPSPAEQEQSGALPTRRD Prediction of potential genes in microbial genomes Time: Tue May 17 06:49:52 2011 Seq name: gi|292820582|gb|ACYT02000047.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.23, whole genome shotgun sequence Length of sequence - 1024 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1024 1176 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Predicted protein(s) >gi|292820582|gb|ACYT02000047.1| GENE 1 1 - 1024 1176 341 aa, chain + ## HITS:1 COG:NMA0958 KEGG:ns NR:ns ## COG: NMA0958 COG0801 # Protein_GI_number: 15793915 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Neisseria meningitidis Z2491 # 24 168 8 149 164 94 40.0 3e-19 VQAAHAAPAHDATRPEHLRSRRVVLAIGGNLGDVPVTLMHTVEALSYMEGFQIDDVSPIM RTKPVLAPGQAPQPDYWNAVVVGSAIATPDELFAQTSRIERELGRERHQRWGARTVDIDI IQIEGLASSDPVLTLPHPRAKERAFVLAPWILCEPDAVLEGVGRVSDLLADTPDREGIID AVDDWLEDPAAVMADSDQLLALRAEQASADMRELIEALTGEISQVSDLVTRPGEPAEPVE IPAAHTVIEDSGDDVEEAADSESAPEQAEEPEAAPVSAAEAPAPRASIWSRLAAAQASDE ASSAEEPEASEPELDESASHGVDVPEAEAPAADAAAPADET Prediction of potential genes in microbial genomes Time: Tue May 17 06:49:53 2011 Seq name: gi|292820578|gb|ACYT02000048.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.24, whole genome shotgun sequence Length of sequence - 1845 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 13 - 417 552 ## gi|154508556|ref|ZP_02044198.1| hypothetical protein ACTODO_01057 2 1 Op 2 . + CDS 418 - 897 514 ## gi|293191323|ref|ZP_06609175.1| putative integral membrane protein 3 2 Tu 1 . + CDS 1208 - 1844 595 ## gi|293191324|ref|ZP_06609176.1| conserved hypothetical protein Predicted protein(s) >gi|292820578|gb|ACYT02000048.1| GENE 1 13 - 417 552 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508556|ref|ZP_02044198.1| ## NR: gi|154508556|ref|ZP_02044198.1| hypothetical protein ACTODO_01057 [Actinomyces odontolyticus ATCC 17982] # 1 134 557 690 690 236 98.0 3e-61 MSSVPADSPAGRMTRKIGTGTYKPSGTEKPRWAPVFESKREESRSKIALPDWNFSVGASH DVRVVDDRSGLGRDDEAPKATVHADGRSTILAPGLPDNTPVGPIPEEEATQTGILRRVVV RPTMTGAIPIVKRR >gi|292820578|gb|ACYT02000048.1| GENE 2 418 - 897 514 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191323|ref|ZP_06609175.1| ## NR: gi|293191323|ref|ZP_06609175.1| putative integral membrane protein [Actinomyces odontolyticus F0309] # 1 159 1 159 159 244 100.0 2e-63 MKPLSITWVTLVGFVCALLSFLGFFAHMRAGGTPMIVTPGPAVVFAVATALLIWSGLAVR RLRANKDTWIDAIGAMRVAVFARASAIVGSALAGVLIGVMIVSLTQLEASAMVANAIASG LSGLVGLVWIVVALVVERWCVINPDDDGSSSSHKRSAAA >gi|292820578|gb|ACYT02000048.1| GENE 3 1208 - 1844 595 212 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191324|ref|ZP_06609176.1| ## NR: gi|293191324|ref|ZP_06609176.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 212 1 212 213 311 100.0 2e-83 MNLWPRRIITGLGLLLIIALIVWGIVAAVRAIGGAFSASPVPQSTPQSVVQSGALDASGY TLKGGQEATADGLLTDGTTIDIPACLDRDITATAKASPVASGSAMPVTLTLENRGSVACS TSLTRFNLAVTTGDHQVYDSSRCADSQQSSMTLLLRPGGTWSGSLSWDGYVYTNGCTAPA GGASAAAAGTYKVAVTMGTREVGSTVVDVTPA Prediction of potential genes in microbial genomes Time: Tue May 17 06:50:20 2011 Seq name: gi|292820575|gb|ACYT02000049.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.25, whole genome shotgun sequence Length of sequence - 2333 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 - CDS 34 - 1104 575 ## PROTEIN SUPPORTED gi|163764769|ref|ZP_02171823.1| ribosomal protein L18 2 1 Op 2 . - CDS 1141 - 2331 1213 ## COG1066 Predicted ATP-dependent serine protease Predicted protein(s) >gi|292820575|gb|ACYT02000049.1| GENE 1 34 - 1104 575 356 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764769|ref|ZP_02171823.1| ribosomal protein L18 [Bacillus selenitireducens MLS10] # 1 343 6 348 360 226 37 2e-59 MTSDAAILRDALRAVAPGTPLREGLERIQRSHTGALIVLGYTPEVQALCSGGFDLDVAFT AARLRELCKMDGAVIIDPNQWRIRKANVQLFPDPTIPTDESGMRHRTAQRTARQTHLPVL SLSASMRMISIYVGSEHRLVEEPEALLSRANLAVDTLDRYSQRLDEVLQTLTILEMRDSA TVRDVATVMQRMEMIRRITSEITEYLEELGSEGRLLALQVEDLVRGSASERALVMRDYIA NPDDLARVEAELSSLGSERIVDLTAISNILGLDVYEVADLDREITPRGVRALSLVPHLSW SAIKVVSAHFNSLPQLRAATVEDLEELEGIGPYRAKLITENLAHQAQAVSAGIVGW >gi|292820575|gb|ACYT02000049.1| GENE 2 1141 - 2331 1213 396 aa, chain - ## HITS:1 COG:Cgl2612 KEGG:ns NR:ns ## COG: Cgl2612 COG1066 # Protein_GI_number: 19553862 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Corynebacterium glutamicum # 1 389 43 431 431 348 53.0 1e-95 SSRSTGVSELDRVLGGGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTAAAGGRGPVLYV TGEESAAQVRGRAERIGALEPNLLIADETELGVILGHIEASHPSLLIVDSVQTISSAQVE GGAGGVAQVRAVAASLIRVAKESDLPTLLVGHVTKDGGIAGPRVLEHLVDVVCQFEGDRH SRLRLLRAVKNRYGPTDEVGCFELTDSGIYGLADPSGLFLSRTTRGVPGTCAAVSLEGRR PLPTEIQSLVAPSSGGSPRRTTSGVDHARVAMILAVLQARIGADTSGADVYVSTVGGART VEPAIDLAMAISIVSSLKGTPPRPDLVAVGEISLTGEVRACTGTQRRLAEAARLGFSSAI VPAQGSEDLSGVDGITVFTVSDLATAIRVSFPADSQ Prediction of potential genes in microbial genomes Time: Tue May 17 06:50:23 2011 Seq name: gi|292820569|gb|ACYT02000050.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.26, whole genome shotgun sequence Length of sequence - 11006 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 184 130 ## gi|154508560|ref|ZP_02044202.1| hypothetical protein ACTODO_01061 2 2 Op 1 . + CDS 508 - 6546 6964 ## Achl_1331 fibronectin type III domain protein 3 2 Op 2 5/0.000 + CDS 6571 - 7785 1229 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) 4 2 Op 3 . + CDS 7863 - 10337 2753 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 5 2 Op 4 . + CDS 10337 - 11006 704 ## COG0515 Serine/threonine protein kinase Predicted protein(s) >gi|292820569|gb|ACYT02000050.1| GENE 1 1 - 184 130 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508560|ref|ZP_02044202.1| ## NR: gi|154508560|ref|ZP_02044202.1| hypothetical protein ACTODO_01061 [Actinomyces odontolyticus ATCC 17982] # 1 61 1 61 488 134 100.0 2e-30 MTWAGSKNGAHPRAGPADEGGSGYGECMAKEKITYRCSECGWTSPKWVGQCRECGAWGTV D >gi|292820569|gb|ACYT02000050.1| GENE 2 508 - 6546 6964 2012 aa, chain + ## HITS:1 COG:no KEGG:Achl_1331 NR:ns ## KEGG: Achl_1331 # Name: not_defined # Def: fibronectin type III domain protein # Organism: A.chlorophenolicus # Pathway: not_defined # 33 1783 36 1800 2040 834 36.0 0 MNKARRSRNTWSKRIPALSVLLVSAMLCVLAVVYRGVEVTQVSVDDGGIWVTNQDRKLLG HLNYDALMLDGTVSVKSASFDIGQEGGDVTLGETVSRTVTPVRPTSFSLGQSVTLPDNAV QVQGGSVLAVLDPNEGLLWVGSANEPATMSLLREDAVANDLSDGIVTVSNSGTVFAYSPG SSKLVTLTSEGQAWRVKTTEIKDFTPAGPPTITAVGDKPVVYDQTGNKLVLPGGKVRDLS EEHVSGAVLQAPGDEAASVLLATGDQLVSVPLNGKAIERQEASESGQKGTPAPPVFHRGC SYGAWAGSGAFVRTCTDSTRNQAQTVSSLAEASSAVFRTNRTRIVLNDVSTGTLWLPDKN MVVVSNWDQTPTEEQEEEDTPTPDERQQVSEPEHKDKNTPPEAVDDEFGIRPGRSTLLPV LDNDSDDDGDVLTARAVTNPEFGSIVRTRGGRALQITDVPESMTSGSTSFTYEASDGLAG ATANVTLTIHPWSQNEGPRQLKHPVIKVGANAQVEYNLLSDWIDPDGDQFYLMSATAPEG MAVQFSEDGTVQIRDLGSGAGVKAIAVTLSDGHAETTGELKVSVQEAGNVPPVARADFYV ARVAEPLTIDPIANDTDPNGDALSLVAAGTAPAGTAVSADLSRGTLTFTGSVPGSFQFTY TVSDGPSTTVGVIRVDVVDDDTNALPIAEDDLAVLPSGGASLIAPLANDTDPSGGVLVVQ SIDVPANSGLEVTLIERHLLRITSPGGLSDVTTFTYTVSNGAGSATAQVSVIPTNAQSEE TPPETTPDTAKVRADDIGSVSVLSNDRSPIGLSLSLDPEVQVMTGAELGTVFVTGNQVRL AAGSEAGVVRVAYTAVDSVGNRSTSTVTFEVIASSAANSAPVPKALSAWAVQGQMTRVPV PLTGIDPDGDSVALVGIDQPPAKGSVVLGTEWLEYTPSDDATGTDTFSYIVEDRLGVQGR ARVRVGIAPPGSQNHNPTAVPDSVTVRPGREVSINVLNNDVDADGDTLYMDTDPATVSVS DPAATVTVAEDLVTVKAPNTNGVFVVAYQIEDGRGGRAQGQLTVTVDAEAPLRAPIARDD VVPVSDLPSDSKPVSVAVLVNDEDPDGTTAALTVSSDASGVSVSGQNLSISTDARRRLVV YTVTDPDGLSASAVVTVPGTDLLAPRLDTTRVPVAMRAGSTLTLDMHDYVLVRDNSRSPI ITDASSVKFSGGLESASLQDSTHITLSAPDTASGKASVSFTVRDGASDDASALSSTLTIP ITIQPARNLPPRLTPTPIVVGQGESVTVDLTQMVDDPDDQAKNSFSYAVVKAPGGVDVSL DGYNLTVSGKKDQPKGPVGAITVSVDDGSGAVNADIPVTIVKSSKPLVTTTEARIKAKAG QAVDVNLSEYTTNPFPDPLVVLDASVHVGQGTASGNGNVLSVTPKAGFHGNMTIVYRVMD ATNDPDRVVQGRVVVQVVDRPEPPQKVSATPVGANSAFVRFDSGASNGGTITGYTITDKF DGKTYETRDPGTQITGLAIGEMHSFTVVAHNEAGDSDPSAASAEVRIDMAPEQMAAPTVV GTDSALEVSWVEPHNEGSRILSYTVFVATGGSGQSTQYPVSAPKTYLRIPGLQNGTDYTV YVQAQNKADTPSPMSLGTTMHPHRAPDQPTSVDAYSVDSGLSLSKAKVKVTWERHDHGGA GWGETIVSVGGSEVRVPAEAQSVVIDGVDTDTSVPVTVQLTNSDRDASLVTTTHVAVATV PLPIDTPTLQGNGTPGQLVVSNLRPKEGHGFSASELTVRYSLTSGTCANGTPIHEGERID VGGWQKREVHFCQSGRGLNRNEVTSDAVSAVGQPTAKPDPVRVWVSDVGSTSAVVRWDPI GANPALSGLKVYLNNREQPVGVGATEATFSDLAQGTEYSATVAATNDWGTTQMQADSSVV TKLDVNLTWTDVCQGGEKHTPPGGCHTFTFSAPGWAGTSLTHKCTISSDLDGWTEEVTID RAGPIESNIATRADSEAAFAQKVRVGNCRPVR >gi|292820569|gb|ACYT02000050.1| GENE 3 6571 - 7785 1229 404 aa, chain + ## HITS:1 COG:PAB1277 KEGG:ns NR:ns ## COG: PAB1277 COG1721 # Protein_GI_number: 14521829 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Pyrococcus abyssi # 28 319 8 291 394 62 22.0 1e-09 MKNAWRALSARVQALPGYEGVARWLSALTPVGWAVIVAMLAGTVAAFAFGWLEGFIVAVM GLVALVVAVASVASPSPLSVTLRMKNDRIVAGQVAVGRVRVVNESGRRSGSTLVEVTIGR GSGEFLVPPISGNGTWNESFSVMTKRRGVINVGPARTVRMDGLGLLRRVRSWDDPILVHV HPPTVRFSFDATGMQMDVEGVASEKLTSSDVSFHALRDYEPGDDRRAVHWPSTARFGRLI VRQFEETHRSHHMVLLDTRVDAWDRRSFETAVSVAASLALAGSGEARTVSMHTADEWIPT GSPMAMLDALSEMETSTRSEFAGIVRRCIMERGGISVLSIVVGAGVDDQEAARLANIAPV DVIVSVIRVVPGRARRRRKITRGVIIDCPSLEDLPMLVSRGVNA >gi|292820569|gb|ACYT02000050.1| GENE 4 7863 - 10337 2753 824 aa, chain + ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 425 602 384 571 721 87 34.0 8e-17 MGGSIYRAAMPAWSLLVLGVLFSGPILMFESVFGGGQGAIAALAGVVVGLVVAWAAAKWR WDLLSIVATVVASHFLLGGPAALRETTRWGVVPTSRTVQTLVVGSVEAWKDLLTLTPPAG SYVGPAMVPWMACLVCSVAAGVVTVRYGRPMWGSVPLILAGVIAIVWGPSGHSPSALLVI AWWVGLIVWWAWASAIGRARLGADIVIGMASTATTASTTMGGSSRQIVHVWWRVGMGALM VGVMVAAAIPAASLLGPTASDRVVGRDVVEPPVDARQYPSPLSSYRHYNKDLEDESLIRV SNLPKEARVRLGAMDVYDGTTFGMGVSNTADGTAGYRRVGSTIPGRSADTAGVQTSVSTS QLLGPWVPTIGQVSVLRFEPSAPNAAEQQDGLNYDLWADTALTTGPTGQLSYSLSTTMPR EHADSEFASVNAARYAGGDTNVPKDVDSLAADHTSTARSDLEKARAIEQFLHTDGYYSNE DTINSRPGSSQDRIERMISAEALVGDDEQYATLMALMLHSQGINARVVMGAYREGTSGSV DLTGSDMHAWVEVEFPGVGWATFDPTPPRDQQPTTQVNKPKSVPKPQVLQPPEPPEQPVE LPPATRDQATDPHDPNGVHIPWMAIGTVSVLLLLLLGPVLAVLLAKSRRRKSRRRAQAAE SVRGSWDELVDTAIDSGLVVEPHLTRQEVAWALASQWTPQKSESDEEGDAKARKARKRSA ADVRVPGWSLFSGAVPRAVTVARRADVADFAAGGARPEDAEQAWNDVDELRREWAASVSL FARLRYALSLKSLRWRRRARRQADAARKGGRSLAKRMGRRKGKR >gi|292820569|gb|ACYT02000050.1| GENE 5 10337 - 11006 704 223 aa, chain + ## HITS:1 COG:Rv3080c_1 KEGG:ns NR:ns ## COG: Rv3080c_1 COG0515 # Protein_GI_number: 15610217 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis H37Rv # 6 219 10 230 340 120 35.0 2e-27 MDSDARVGMVPSLPGYEWIRPLGSGGFADVFLCRQELPSREVAVKVARRDRGADGEAGIA READVMALVSGHPAVAQLYGAGRTPDGRPYLVMEYCPVANILDQVRANPMSTDRALSMVI RMCGGAEMLHRAGYVHRDIKPSNIMINAYGSPVLTDFGVAEPVGADPRGGRDGFSVMWAP PEQIAGTARAHPTQDVWALGATLWTLLMGRSPFEVEDGDNSAH Prediction of potential genes in microbial genomes Time: Tue May 17 06:50:49 2011 Seq name: gi|292820564|gb|ACYT02000051.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.27, whole genome shotgun sequence Length of sequence - 3814 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 835 673 ## gi|154508564|ref|ZP_02044206.1| hypothetical protein ACTODO_01065 2 1 Op 2 . + CDS 855 - 2069 1002 ## COG1404 Subtilisin-like serine proteases + Term 2174 - 2203 -0.8 3 2 Op 1 . - CDS 2150 - 3373 1095 ## COG1404 Subtilisin-like serine proteases 4 2 Op 2 . - CDS 3370 - 3813 601 ## gi|154508099|ref|ZP_02043741.1| hypothetical protein ACTODO_00592 Predicted protein(s) >gi|292820564|gb|ACYT02000051.1| GENE 1 2 - 835 673 277 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508564|ref|ZP_02044206.1| ## NR: gi|154508564|ref|ZP_02044206.1| hypothetical protein ACTODO_01065 [Actinomyces odontolyticus ATCC 17982] # 1 277 229 505 505 394 98.0 1e-108 VARGRVSRIDRPGVPDAVTAIVRRAMSLDPEQRFGSAAALGYALQTVEREMHRPVTEMKL SVVASSSAPASAMSSPSAAALDAERTRTRRGSFSDGPQASSNEAWAGNSTTNRTGLVEGE SKRPVWVVPVLALVMVLATAGLVVAMLTGGGHSIHLGGGGGGGSTPTPSSSTGAVSNSDQ GDAGAVPPEAVTGLTATPNGNEIRWGWEVPEQGQYQPGALEFKYVLTRPGEAVVAETMRR NSLTTTAVSGENCLTVSLVVTSTGRESAPVTQCVTVP >gi|292820564|gb|ACYT02000051.1| GENE 2 855 - 2069 1002 404 aa, chain + ## HITS:1 COG:BS_epr KEGG:ns NR:ns ## COG: BS_epr COG1404 # Protein_GI_number: 16080891 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 55 314 125 376 645 67 27.0 6e-11 MSHLMPRLARRGAGLGVACALAGAALVFPAAPAQASRAPITSDEQDYYSYYYLGQLHASG YTGRGVTIGLLDGPVNTNIPELQGANIQYMSRCDVESSEDSWEHGTVIAQMVSAPEFGIA PEARLNRYTVSLKGDTPSRDCAIGWWDHGYSETSVLIELALNDGVDIITMSSTYSADTES MRWALARAITQKVPVVAPLGNESEYNPSTSLARMTGVVGASSVNPDGSLTSYSNYGDFVS AASVSRPYARSGITWETGYWQGTSFASPTIASFLALAKQSWPEATGNQLLQALARTGIGG NGGYWNPYTGYGAVDPYVLLTTNPTQFPDENPFMNKGYESIPTRQDIADYADGLVDPRRI NADDSYQYRGFDEHLTLSREHGYPTHLGTSPRFHVSNASNAKKK >gi|292820564|gb|ACYT02000051.1| GENE 3 2150 - 3373 1095 407 aa, chain - ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 60 303 101 336 361 75 30.0 2e-13 MSIRSNAAPRSPFGFVGKAGRAARALTTAASALTLAAGALALAPAPTHAADPITTQEYFS YYHLDSARQKGYTGKGVTIALIDGPVDTSAPELAGATITDKSRCTIEASPAEARHGTDMA TLLVSPYTGVAPDATLYTYQTATADAVSSGTCKSNGLRLDTMAILINQAIDDGAQIISIS QSSAERDSELQWALTRAMSEGVIIVASAGNTASDNSIEQLIRWSGVVGVSAINSDGTFAS YSSWGNGVVTAAFGGPVNTVDANTGAPTTASGTSNSTALVSGMLALARQKWPDATTNQIL QSLVHSGLNPNHDWNEKTGYGAAALGSLVNDDPSQYPDENPIIQKPGGSEPTADKVADYT DGLINPIETTLLPDSYVYRGADDQVVMYQADLKTPLHLGTSPRYHRK >gi|292820564|gb|ACYT02000051.1| GENE 4 3370 - 3813 601 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508099|ref|ZP_02043741.1| ## NR: gi|154508099|ref|ZP_02043741.1| hypothetical protein ACTODO_00592 [Actinomyces odontolyticus ATCC 17982] # 17 147 388 514 514 111 55.0 2e-23 GVTGSTSGLGGAGAAGLKVGSYSGSGFGSYTPPANSAGAGGANGAAGSSGVTGTAGANGG GAAGAAGAAGKGGATSGGFMGAGAGAGAGAGKDDKKGRKNRYVAFKFDDDEDELPAGYVN PLSQTSGTDKDITPAKRNDDGWDPRQW Prediction of potential genes in microbial genomes Time: Tue May 17 06:51:28 2011 Seq name: gi|292820546|gb|ACYT02000052.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.28, whole genome shotgun sequence Length of sequence - 18041 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 5, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 998 968 ## gi|293191446|ref|ZP_06609188.1| conserved hypothetical protein 2 1 Op 2 . - CDS 1032 - 1589 537 ## gi|293191447|ref|ZP_06609189.1| hypothetical protein HMPREF0970_01527 - Term 1610 - 1639 -0.5 3 1 Op 3 . - CDS 1646 - 2188 987 ## gi|293191448|ref|ZP_06609190.1| conserved hypothetical protein 4 1 Op 4 . - CDS 2254 - 6300 5736 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 6425 - 6484 2.7 5 2 Op 1 . + CDS 6394 - 7875 1586 ## gi|293191450|ref|ZP_06609192.1| putative ABC thiamine transporter, inner membrane subunit 6 2 Op 2 . + CDS 7875 - 9302 1073 ## gi|293191451|ref|ZP_06609193.1| putative translation initiation factor IF-2 + Term 9309 - 9342 1.2 - Term 9560 - 9594 6.5 7 3 Op 1 . - CDS 9623 - 9904 591 ## SACE_6782 hypothetical protein 8 3 Op 2 . - CDS 9927 - 10307 412 ## BDP_1575 hypothetical protein - Prom 10333 - 10392 2.6 + Prom 10319 - 10378 5.7 9 4 Op 1 . + CDS 10428 - 11789 1394 ## BDP_1576 CD9/CD37/CD63 antigen 10 4 Op 2 . + CDS 11793 - 13247 1457 ## BDP_1577 serine protease (EC:3.4.21.48) 11 4 Op 3 3/0.000 + CDS 13322 - 14662 929 ## COG1404 Subtilisin-like serine proteases 12 4 Op 4 3/0.000 + CDS 14695 - 15846 1107 ## COG1404 Subtilisin-like serine proteases 13 4 Op 5 . + CDS 15908 - 17125 844 ## COG1404 Subtilisin-like serine proteases + Term 17185 - 17231 0.3 14 5 Op 1 . + CDS 17257 - 17643 658 ## gi|293191461|ref|ZP_06609203.1| putative cytoplasmic protein 15 5 Op 2 . + CDS 17649 - 18039 403 ## gi|293191462|ref|ZP_06609204.1| single-stranded DNA-binding protein Predicted protein(s) >gi|292820546|gb|ACYT02000052.1| GENE 1 2 - 998 968 332 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191446|ref|ZP_06609188.1| ## NR: gi|293191446|ref|ZP_06609188.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 6 332 1 327 328 583 100.0 1e-165 MVSSPMYERLKVFMEAARSNRDLDAWDTDHKKTLKGFEEAAERLKRYSDNQGFQGQTADA MNQWVAESLHRINMVRSIYEAGHTTYEAGRSTMATALKEAEMISPTLLDSATEAMRDNPV VMVPSSSPGGGVSVLGKRFTTGAAYVDAVEAQANAQREAAAQRVLSMVNERTSHIAALMR QQAQLSEQVKQRTDHPGTVGGEVVKGISQWSYSEDQGFGRAADRSPSSANYPGGFAQPWW SEADAAAAQNRTVASGAIPTQEPAYGELGSRTNPITDPQELMGTDLLHTPANGTAYRNGV VGGHTPAPPADAHHPLWRLNGGAASDSATAGR >gi|292820546|gb|ACYT02000052.1| GENE 2 1032 - 1589 537 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191447|ref|ZP_06609189.1| ## NR: gi|293191447|ref|ZP_06609189.1| hypothetical protein HMPREF0970_01527 [Actinomyces odontolyticus F0309] # 1 185 1 185 185 230 100.0 2e-59 MAGEYQSVSVDSAKQEAAATEVVKGFDAMTESAEGASALGAAQKSMFWGHETGPRSVQDS STEMFNAVSELLKNEAALISTFEAEINAALSSFTGTEHENKAQMEKINQALDRVAKSDAA VALKASIGQFSKAFGVSTASSAAGALVGSLSGKLLMNGGLPHASSGGSSGGATSQAPTQN TQPTV >gi|292820546|gb|ACYT02000052.1| GENE 3 1646 - 2188 987 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191448|ref|ZP_06609190.1| ## NR: gi|293191448|ref|ZP_06609190.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 180 1 180 180 320 100.0 3e-86 MSSLVSRRACAATSSLLLAAVALSGCSLFGGGGSKATDISKLPNIPQGQKQQLVQQMQSA SGDQKKQIAEKAVALNNMVGAQLVGVEPSLIASQQFKLDPKGQTVVNKNDTVYQMMSATD FWRLGNDTYDLCVEQNCEYYSSWTVDVEGSGSDLTYVWTLKIEGSDQPDKPLVRRFKVAK >gi|292820546|gb|ACYT02000052.1| GENE 4 2254 - 6300 5736 1348 aa, chain - ## HITS:1 COG:Rv3447c KEGG:ns NR:ns ## COG: Rv3447c COG1674 # Protein_GI_number: 15610583 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Mycobacterium tuberculosis H37Rv # 13 1345 5 1235 1236 793 37.0 0 MVTRKKRRTAAVPEQPSGTLAIQMPPEKAEPASIGNVLMMVVPMLGSTGVMVFMAMQNPD NTRSMLMGGGMLVAMLGMVGFNMYRQFSQYRTRVKTQRREYLSYLAETRESVRKVAKKQR AYYNWVYPSPDALVTLAANGSRLWSREGNTYNLLTFRYGSGTQPLGLIFERPPIDPMTEM DVVCLSAMDRFIGVHDHTDNVGKFLYLGDFSHIEVVGDGESAYDEMRAIMMHLACFIDPS KLKIAVLCSADRLGDWEWVKWMPQARSSIVRDAVGPGRMISTDPRELAEMIGPDIAMRGA YRPGDDMPEWPHLLLVLDGAEFPPNSPFGSAVGVRGVTIMSRAREWTPMKSHTALRLVIH PNPDHKGADVVDVVTMDSLPEQAFADRLTAVQAEAVARRMTPFATQQNLEEAETPVGRSD EARQMDLMELVGIGDIRDFDPEKQWRRREGRERLAAPFAVTPEGRPVVLDIKESAQQGMG PHGLLIGATGSGKSEVLRTLVLALALTHSPEQLNLVLVDFKGGATFAGMSDLPHVSAMIS NLESELSLVDRMQDALQGEMVRRQEVLRQAGNYANVSDYEADRLAGKHQFPPLPALFIVL DEFTEMLMAKPEFGEVFIMIGRLGRSLSVHLLLASQKMDLGKARGLESHLSYRIALKTFT ENDSREVLGIPDAAKLPPLPGSGFLKAGGDGLVRFRASYVAAPPPARTLASISEASTAGA PTAPIEILPFTVAPVITREDLGEEEEIDQNQEVVLAGDEVWADMSEMDIAVAKMKGKGYP AHQVWLPPLEVPDTFATLMPDLRPDPELGFVSRAWRESGTLRVPLGTVDLPLEQRRETLV LDLSGAGGNFALVGGPQTGKSTALRTIVQALSLTYTPQEVQFYVMDFGGGTFAGFAGAPH VAGIATRDTEEVRTRMIAEIAAIMDDRERYFRQNGIDSMDTYRRGRLEGRYDDGYGDVFL VIDGWGALRSEFDGLDRQVTTMMSRGLSLGVHLIVSAARWMDIRSEAQDIFGSRLELHTA NPKESIVNREGAARIPKGRPGRGIDMVGHEMMIGLPRADDDPDPSTVSQGVTRTVAKIRE SLVHGPGPKLRLLPENVTVPEILTQVPDQQILPRGGGDMILGVEESRLGPLLFNTRAESH LYLFGDGKTGKTTFLRSIISEVMRLYTPGEAKILTIDMRRTLMGAVPKEYQLGYLTNHAE AMKKMRELAGYLRTRLPGSDVTSEQIRDRSWWSGPEAWILVDDYDLVATTSGNPLMELID LLPQAADIGLHVIITRRMGGASRAAYEKVLQMMNDLAVTGILLSGNPSEGAIINGVKPKR AVPGRAQVVHRELGVVAAQLVNTPPASI >gi|292820546|gb|ACYT02000052.1| GENE 5 6394 - 7875 1586 493 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191450|ref|ZP_06609192.1| ## NR: gi|293191450|ref|ZP_06609192.1| putative ABC thiamine transporter, inner membrane subunit [Actinomyces odontolyticus F0309] # 16 493 1 478 478 746 100.0 0 MHYTGHCCLPENGGYMSATMVSVTVIDSDGTSDFAAPEGTTVAGLCAMLEIDLSLPSVRV SYADGRPLDGAAVLGRDLPAGSTIALSSRVLSAQQVNEASERQENQWLSPVLALLGYCFI VIGAVSSLCLLPMLGDAALIGFAHPEDGPKWAVEVAKIPLWARGACAAVCCAASILPLFA SRMVRSRPALLLLMPALAGYSAIGFVSMSGIHALSVAPVIGVWVALAVSLAVVSLTTTPT ALSALFAWIGATALVTIGAYPMFGLIDIAPLALLLGVFLFLMAPRFALRVPDSQLIDSAS VQTIASRIRQPPAQKPSTLTGGRMADALGHTDARYTLLVAASTLFILVGGIPLAYTVTPA ITLGRGLGGFIFVIMSIVTLLTAPRGIRAHVGQILPRVAAAGVGCAFLFGKWSQSLAVGT SEATYSLFPLLPLSILLIIAIATVLWMTLHVPKGDAALSGTILDFLQTFCIFTLLPAAVI SSGLFEFAWRAVL >gi|292820546|gb|ACYT02000052.1| GENE 6 7875 - 9302 1073 475 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191451|ref|ZP_06609193.1| ## NR: gi|293191451|ref|ZP_06609193.1| putative translation initiation factor IF-2 [Actinomyces odontolyticus F0309] # 1 475 1 475 475 651 100.0 0 MADTTKTPFAHAPASRLVGAYLIDLLILGVLLGVTWYVHFTAWTIGMVTAEAVVASALML GASGRTPGMAVMRVCLIRDEDDAQTPSLGAALGYTALAVLLQVTGVGLLASYAMVHDGRT WLSGPTRTRFVDLRKHAALAAGPGEVERSERPSRAPSEFDSVRGGADQWSAPAAPLTPVP SSAPDYSAPGQRVNDPYGEDDSAPATPAVSPLPAAPSVPAALSVPAALSVPAAPAAPAVR EPNEFDTLLAPPQGAPDTHRPAPQRPAAPSTPAAPAVPAVPAAPAAPAQVPAPPSWGAPT QQVSPQPAQASYGGGGQYAAPASGVPGPPPSRRDVQTVQRSGASQWGGAGQSQWGVPVTS PRTQLLWLIFDSGQRELIDMPVTLGRAPAAVEGSRAVVVPDATMSLSRTHMRLGPTATGA WIEDSFSANGTQIRTPDGRVMELTGGQAVEVPAGTEVIMGDRRATIVYADADSVH >gi|292820546|gb|ACYT02000052.1| GENE 7 9623 - 9904 591 93 aa, chain - ## HITS:1 COG:no KEGG:SACE_6782 NR:ns ## KEGG: SACE_6782 # Name: not_defined # Def: hypothetical protein # Organism: S.erythraea # Pathway: not_defined # 1 93 1 93 95 64 41.0 1e-09 MDFQVNYGALDAAAADINTGAANLQNCLDDLEQTLNQLRSSWEGQTQEAYDVAQRQWNQG LEGLKDVLRRTSSAVDSARSNYQQTDQSNAARF >gi|292820546|gb|ACYT02000052.1| GENE 8 9927 - 10307 412 126 aa, chain - ## HITS:1 COG:no KEGG:BDP_1575 NR:ns ## KEGG: BDP_1575 # Name: not_defined # Def: hypothetical protein # Organism: B.dentium # Pathway: not_defined # 30 122 6 98 103 70 41.0 2e-11 MVSIHVSPCSHAFRRESPLIQMEVHMADQRAAEGALKQGFAAVESTKADIDSHLKRLEGD LSTIGSSWQGAASVQFSSLMAQWQENAAKVNQALQDLADNLRATDSSMEANESETENSFA QLLGGL >gi|292820546|gb|ACYT02000052.1| GENE 9 10428 - 11789 1394 453 aa, chain + ## HITS:1 COG:no KEGG:BDP_1576 NR:ns ## KEGG: BDP_1576 # Name: not_defined # Def: CD9/CD37/CD63 antigen # Organism: B.dentium # Pathway: not_defined # 11 448 1 432 438 82 21.0 3e-14 MASKPSRGVALIPLTITYGVDRSDVTLPQSIPLVELLPGMVETVGAFTDQPTNDGFAVRT ASGRLLDQSKSLSAQGVRAGAALTLEPLGEGASDMVYDDLTEAVGQVVERVSTPWTREDA RTLAALSAAGLVFVAALLLATTPPDALTALDPKAVTRYNVIAGAIGIVAALLVTATSAVM TRKHPQASGIALAHTVPFLTAASALRLSQSHWDTAGWGWTGLGLLIGSLAVLALPKRSRI SIAAPLVVGTVLAATGLLVRLGQLSQAGISAILFALVIVLLQVAPWIALAHIPVRILDAD TTEQIPAKGITDQISTSFMFVVALRAGGAIAALFLAVALMTAPETRSVSLPLTLIVLGAV SLVLQTRSIRARVEVLLGALTGLIVILVAAVLGAYADPRTMPWLTLSAIATALVLVITNV VGPRARPHLTRIADTISVLSLFVLLPLAVYLWS >gi|292820546|gb|ACYT02000052.1| GENE 10 11793 - 13247 1457 484 aa, chain + ## HITS:1 COG:no KEGG:BDP_1577 NR:ns ## KEGG: BDP_1577 # Name: not_defined # Def: serine protease (EC:3.4.21.48) # Organism: B.dentium # Pathway: not_defined # 1 480 1 449 845 134 25.0 8e-30 MPSSKDILEAQRFNRNRLITAFTSGTPDGREVDTPSPVRPLVFGLVVAVILSVVGIGMRV FAPSPQLGEAQYQLVDVKGTGARYFWANGVLHPIANVTTAKLLSPESKLPYIQASASSLE NIPRGAQIGLPDVPDDVPQPNMLSKQWLSCDMESGYHTWIAKELPAANFPVKQATSALVQ ATGSGEKYFVDREKGKKYYIDSSVSRLGDWALSFQNLTSYPITVEPEWLDLFPSGTPLRP WSYNDIENAGQPATNLPGDLKNEGITIGMVLDQVDSTGQVKNSYLVIDDSNLVVFNSTAA RLYQDAPPSKKFPTEMFKYVEPVRAVFVGDDWPAVEDFESPEWFDESRDAASRTVLCAQM DTTDRLNPKFDLVTMPEKRAIEASYDAESLQSPKGPSTTRNVTVAGGSGALLALTSGGGG EAASYVFISDMGFRHSLGDVPAVSMNALGWQSSEAASVPRAWGELIPPGSEMSPKAAATS VGIK >gi|292820546|gb|ACYT02000052.1| GENE 11 13322 - 14662 929 446 aa, chain + ## HITS:1 COG:slr0535 KEGG:ns NR:ns ## COG: slr0535 COG1404 # Protein_GI_number: 16332024 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Synechocystis # 58 324 115 362 613 90 32.0 7e-18 MPIAAPVVSPDDSGAFGPGVAHADPVPTPSVRPTPTATPSSSATTPASDSEGGECSQNSP SYIKQTPAIFDAVGVRRAWEVSRGRGVTVAIIDSGVAAGNQHFQGSDGPVVLPGIDLSGE NTDGRVDVGEHGTAIAGAIAAQELPKEMGSGLVGVAPEAKILPVRVETGLQENRPQKEGE ETFMSKVGRGIQWAADHGAQIIVVAQSAPDGDPQLEAAINAVRGRALVVASTGNVYQGQE TDHVVYPAAYPGVLGVTASNADGSASEQQVHGAHVKLAVPAGVILTTWFDQADCLVGGYE GDQPLPSSSYATAYAGGFAALVASAYPDEGPDMWKYRLEVTALRGTADQRTDALGWGVVA PFDALTFTDIGTRFGPEHPNAAEHPAPARPAVASADLASRDNNLTIRTYIVSAIAVLGAS LLGGLVILSHLRGRPAVVEDSEEDLS >gi|292820546|gb|ACYT02000052.1| GENE 12 14695 - 15846 1107 383 aa, chain + ## HITS:1 COG:BS_aprE KEGG:ns NR:ns ## COG: BS_aprE COG1404 # Protein_GI_number: 16078094 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus subtilis # 41 264 118 339 381 78 27.0 2e-14 MGVLAGTLALSLGASLAPVAPAYAADPPVTADKQDYYKYYKLKSIHDQGITGKGVTIAVL DGAVNPNIPELKGANIQDRTPCVKESAPENAAHGTTVAQILVSPEFGVAPDATLYTYTIP LYGDKSNCTLSGWTGEAENDTPLLIEQAINDGADIITISSSFPTDSIDLRWAMARALAEG VIVVAAMGNETTEDPGDSLALWRGICGIGATTRYNTLTEYTNWGNGLLTTALGTVLTRDT STGRVEEAEGTSFATPIIAGFLALGWQHFDKDVSADQILQALAATGRSGSGWNKLTGYGP ADPVAFLRSDPSQYADENPCVPQVYDSLPSWDDVADYADGVVNPILIRNDDVYVYRGVNE EAALSREHGYPTHIGTSPRYHSQ >gi|292820546|gb|ACYT02000052.1| GENE 13 15908 - 17125 844 405 aa, chain + ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 57 306 104 340 361 82 30.0 2e-15 MVRSIGRSRGLRALSVLASACALALTAVLSPVAPAAPAGAVDRKVRVSDEAYYSRYNLEA LHAQGYTGEGVTIAVIDGRIDTSIPELQGADIVEKSPCDAPVDAESDEHATYIAQLLVAP DFGIAPKATIYNYVSILDSQKSSNDCSLGTAHPAGRAKLDYLIEQAINDGADIIAISSTY KKPQSQEMRWAISRAALSGVPIVAAVGNDRAHDPDNWLGMWGGVIGVSALDKDGNFADYS NYGEGVTLSAVGVVVGRSTLDNQLKEVRGTSFAAPMVAGFLALAWQRFAGGEVSVNQVLQ AVLATAWGTNGQWNERTGYGEINPAALLADDPSQYPEENPLLEKGSRFAFHEDDLYDYYY GLANPREVVNDGWYVYRGVDEESALSEGHGYEVHLGTSPLYHYSR >gi|292820546|gb|ACYT02000052.1| GENE 14 17257 - 17643 658 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191461|ref|ZP_06609203.1| ## NR: gi|293191461|ref|ZP_06609203.1| putative cytoplasmic protein [Actinomyces odontolyticus F0309] # 1 128 1 128 128 192 100.0 8e-48 MVDVMGRTPEEFEEMLNAQIAEAERKAAAMNEFVATLESARVTGFDSRREVEVEVNQEGT MTRVSIDDEALEGSTSDLEEAIMEAYSDAGKNMSRFLREQGHRQFGGGDSAMGEFVDQIS SRLEQLGR >gi|292820546|gb|ACYT02000052.1| GENE 15 17649 - 18039 403 130 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191462|ref|ZP_06609204.1| ## NR: gi|293191462|ref|ZP_06609204.1| single-stranded DNA-binding protein [Actinomyces odontolyticus F0309] # 1 110 1 110 131 203 100.0 3e-51 MGYDLAINTAQLQSHATEVDACATTIESAQNIAAGTQNQVSQNAFGLMFAPYAIVAHFGI KNLSAMMKDISEAEHRLAACLRQTAAEMATVEDGRVKDTKEILDDLQEPVTGTGTGPGGG GGGGGGFGGG Prediction of potential genes in microbial genomes Time: Tue May 17 06:53:26 2011 Seq name: gi|292820530|gb|ACYT02000053.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.29, whole genome shotgun sequence Length of sequence - 8762 bp Number of predicted genes - 14, with homology - 10 Number of transcription units - 9, operones - 5 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 684 965 ## gi|293191497|ref|ZP_06609205.1| hypothetical protein HMPREF0970_01543 2 1 Op 2 . + CDS 681 - 1790 1014 ## Bcav_1045 hypothetical protein 3 2 Tu 1 . - CDS 1900 - 2577 872 ## COG0569 K+ transport systems, NAD-binding component 4 3 Tu 1 . - CDS 2855 - 3100 185 ## gi|293191501|ref|ZP_06609209.1| putative early nodulin 12A 5 4 Op 1 . + CDS 3026 - 3232 102 ## + Term 3247 - 3286 2.2 6 4 Op 2 . + CDS 3330 - 3494 94 ## + Term 3509 - 3548 3.8 7 5 Op 1 . - CDS 3795 - 4697 410 ## Ksed_16880 hypothetical protein 8 5 Op 2 . - CDS 4703 - 4921 110 ## gi|293191504|ref|ZP_06609212.1| hypothetical protein HMPREF0970_01550 9 6 Op 1 . - CDS 5230 - 6792 1879 ## COG0168 Trk-type K+ transport systems, membrane components 10 6 Op 2 . - CDS 6874 - 6990 61 ## + Prom 6814 - 6873 2.9 11 7 Op 1 . + CDS 6935 - 7153 349 ## AAur_3301 hypothetical protein 12 7 Op 2 . + CDS 7238 - 7336 239 ## + Term 7341 - 7384 9.9 13 8 Tu 1 . + CDS 7401 - 8069 821 ## COG0406 Fructose-2,6-bisphosphatase 14 9 Tu 1 . - CDS 8173 - 8565 639 ## gi|154508592|ref|ZP_02044234.1| hypothetical protein ACTODO_01093 Predicted protein(s) >gi|292820530|gb|ACYT02000053.1| GENE 1 1 - 684 965 227 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191497|ref|ZP_06609205.1| ## NR: gi|293191497|ref|ZP_06609205.1| hypothetical protein HMPREF0970_01543 [Actinomyces odontolyticus F0309] # 11 227 11 227 227 279 100.0 9e-74 GGGGATGGAALPTPPGGDGSLDDDKDKDEKKEDDLASLLSGNDKISVTDDELRAFLEKQR EEENDDLKTFYERQKEDQAKALERYAEAHPGEDISEVKSLIEQNQQEQQDAMTDFLAKQR TDEEAQIREWVKDNPTATSREFDTFMSKQRTDQQASYRTFVEEQQKAQNTRIEEFAKAHP DSKPDDVKSLFEKQDQHGDQDIDTFLNRQRQDEERSLRRFIFEGVKK >gi|292820530|gb|ACYT02000053.1| GENE 2 681 - 1790 1014 369 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1045 NR:ns ## KEGG: Bcav_1045 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 9 249 11 247 412 100 27.0 7e-20 MTVKQPVYTPSQGIRGSDPIINAAEDLVSLAQSPNVDSALQAASSAVDAATSVVGSMTSP IQAGVSFATRLALEYVYPLNMWMNQLTGDSAQVNGIGVSWQSVSESLSSIADELESSGQS AMAEMSGESVSAYLMRQGQVVNATRGVAGTSSKFGNAVATVATLVKKVHDLICAVISELV GIAADAAWKAPLTLGFALANACKEIAARAVQWASEIKNILTMVENAFNAIKAMVDMIGTA MSNLTSSIREVGKDCVDPGGGCCGGSDSSADKSSSSKTPETPRKSPEPDIPKPAPEAPKK KEESSFWDRARKVGETVQKLWELWKGKKSDGGSQKPPEVKAPKGPSSPWPRIPAPKVGIL PGGKRPMLP >gi|292820530|gb|ACYT02000053.1| GENE 3 1900 - 2577 872 225 aa, chain - ## HITS:1 COG:BH0597 KEGG:ns NR:ns ## COG: BH0597 COG0569 # Protein_GI_number: 15613160 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Bacillus halodurans # 16 221 7 213 218 133 37.0 3e-31 MADERESKELQSGTLVIGLGRFGSAVAVTQDQLGYEILAVEKNPARVQAFAGRFPLVEAD ATSKDALEQLGAREFRSAVVGVGSSLEAAVLITANLVDMGISSIWVKATSSQHGRILRRV GAHHVVYPDLDAGKRTAHLVGGRMVDYIEMEKDGFSIMKLRPPQEVRGFSLEELDLRGRY GVNVLAIRRPKQRFEYADSSTRINADDEIIVSGDSHLLEYFANRP >gi|292820530|gb|ACYT02000053.1| GENE 4 2855 - 3100 185 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191501|ref|ZP_06609209.1| ## NR: gi|293191501|ref|ZP_06609209.1| putative early nodulin 12A [Actinomyces odontolyticus F0309] # 1 81 35 115 115 99 100.0 7e-20 MHGGWHSRLKPVTPLRGSNHPKQAHSHPQRRRRFHAPRQPHPQRRRRFHKRANLTVTSNY ARHKTVFLSQVLVAIRAKVGR >gi|292820530|gb|ACYT02000053.1| GENE 5 3026 - 3232 102 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLFWVVGAAQWCHGFQARVPAAVHWCHGFQVRVSAAVQWCCGFQARVPAAAQWCCGFHV GLCGALWW >gi|292820530|gb|ACYT02000053.1| GENE 6 3330 - 3494 94 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLFWVVGAAQWCHGFQARVSAAVQWCCGFQARVPAAAQWCCGFHVGLCGALWW >gi|292820530|gb|ACYT02000053.1| GENE 7 3795 - 4697 410 300 aa, chain - ## HITS:1 COG:no KEGG:Ksed_16880 NR:ns ## KEGG: Ksed_16880 # Name: not_defined # Def: hypothetical protein # Organism: K.sedentarius # Pathway: not_defined # 172 284 195 304 327 80 41.0 8e-14 MPGIYLPAGILTDTSSTERQEITFIARLAALSIRYPTYVLSGPSAAFLLGLPIECRLKDL FVYTGSPSGTRRIVFPHVVAPDGTKVPGTTISTCRPNHPVPAIEYLGFRIATPARVVVDC ARLLNEQHGFPIACAGLARACQFDRFHQDESRARQEKARGEFHETLAGTPLNTIGRERAR WMIDRADAGCESPGEALVLLALLRAGIEGMTTQEEVQVADHTYFIDIALPNLKIAIEFDG RIKYGDTVDEVHDSIEAEQRRQRDLERAGWTVIRVRWSDLRVIDEVVAQVLVAIRAKKGN >gi|292820530|gb|ACYT02000053.1| GENE 8 4703 - 4921 110 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191504|ref|ZP_06609212.1| ## NR: gi|293191504|ref|ZP_06609212.1| hypothetical protein HMPREF0970_01550 [Actinomyces odontolyticus F0309] # 34 72 1 39 39 70 100.0 5e-11 MLNASYPQGHNSSFSSHSRRAIIHQSGPYPQLHMVVSNCYLNSSHPSDRRFALLALMERK YNYIASERTAMF >gi|292820530|gb|ACYT02000053.1| GENE 9 5230 - 6792 1879 520 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 80 520 10 445 445 238 37.0 2e-62 MAPAHKGRQQRGKNPRLRPEPGATRSLMHGRATASSPVFSEDPLNPQPSPVVRRVAEGPQ NPHGEVPTTTVQRVRAWLSKQARYSPARLALGTFALIIGVITALLMLPISSSSDTSAPFV NVLFTAVSAVCVTGLTTVDTATYWSPFGQAVIAAGIVVGGLGVMTLASILGFAVSRHLGL TQRMLATQETGTGAMGQISLLLKAVIATSLTMQALLAAMFLPRFLSMGIDPVRAVWDSVF MAISVFNNAGFVILPEGLSPHVTDWWMLIPIILGTTVGAIGFPVIMDVAKNLRTPRRWRL HTKLTLSTYLILAFVGALALALTEWNNPATLGAIDTPSKILNAMLAGVNSRSSGLSALDV GAMRSQTHFVQDILMMIGGGSASTAGGVKVTTFAVLVLAVIAEARGDRDIETFGRRIPTS AVRLAVAVSLLGLALVAVSVVLLLSMTNYSLDIILFETASAFATVGLSTGITPALPIGAK YVLIFLMFAGRTGSMTVAAALALRERSRVIRMPEERPIIG >gi|292820530|gb|ACYT02000053.1| GENE 10 6874 - 6990 61 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSATSVTVIKRGADCCSINDSQICSRGALNPIRSPLT >gi|292820530|gb|ACYT02000053.1| GENE 11 6935 - 7153 349 72 aa, chain + ## HITS:1 COG:no KEGG:AAur_3301 NR:ns ## KEGG: AAur_3301 # Name: not_defined # Def: hypothetical protein # Organism: A.aurescens # Pathway: not_defined # 5 67 92 154 154 83 65.0 3e-15 MEQQSAPRFMTVTEVADIMRVSKMTVYRLIHSGEMPAIRVGKSFRVPEAAVAQMIQAGMA DHSGDQARVIGG >gi|292820530|gb|ACYT02000053.1| GENE 12 7238 - 7336 239 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGSVIKKRRKRMAKKKHRKLLRKTRHQRRNKK >gi|292820530|gb|ACYT02000053.1| GENE 13 7401 - 8069 821 222 aa, chain + ## HITS:1 COG:Rv0525 KEGG:ns NR:ns ## COG: Rv0525 COG0406 # Protein_GI_number: 15607665 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium tuberculosis H37Rv # 2 202 3 201 202 177 50.0 1e-44 MDRTIIHVMRHGEVDNPDGVLYGRLPGFGLTELGHAMAARAAEYLVDSGADIARVISSPL LRAQLTAAPTAAAYDLGIQSDPRLIESDNVFEGLPVNTNRAMLANPKYFKYYCNPLRPSW GEPYRDIASRMSAALSSALREARGREALVVSHQNPIVTLTRFVNGQPLAHAPKSRHCALA SITSFVFSGATLVGTSYAEPAADLVAMAKDMTPGDSQADLRR >gi|292820530|gb|ACYT02000053.1| GENE 14 8173 - 8565 639 130 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508592|ref|ZP_02044234.1| ## NR: gi|154508592|ref|ZP_02044234.1| hypothetical protein ACTODO_01093 [Actinomyces odontolyticus ATCC 17982] # 1 130 1 130 130 212 100.0 5e-54 MARIVFVVAMLAVTIYAAADWHRTPEDEMPGKIAKPIWLMIILFTATIAAIGPIAWLVLR WVSREEKKQTRAPEAPKRPSSPDDDPEFLFRLERDIQRKRREDERRAQEQRKSSKDEETD PAEDSSDEAN Prediction of potential genes in microbial genomes Time: Tue May 17 06:54:22 2011 Seq name: gi|292820520|gb|ACYT02000054.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.30, whole genome shotgun sequence Length of sequence - 9543 bp Number of predicted genes - 10, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 714 845 ## COG0524 Sugar kinases, ribokinase family 2 2 Tu 1 . + CDS 876 - 2333 1524 ## COG0477 Permeases of the major facilitator superfamily 3 3 Tu 1 . - CDS 2411 - 2920 495 ## gi|293191543|ref|ZP_06609222.1| hypothetical protein HMPREF0970_01560 - Term 2931 - 2965 -1.0 4 4 Op 1 . - CDS 3031 - 3615 416 ## gi|293191544|ref|ZP_06609223.1| hypothetical protein HMPREF0970_01561 5 4 Op 2 . - CDS 3612 - 5255 1237 ## Bcav_3284 protein of unknown function DUF1023 6 4 Op 3 . - CDS 5252 - 5368 86 ## 7 4 Op 4 . - CDS 5439 - 6332 1054 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 8 4 Op 5 . - CDS 6376 - 7698 1382 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - Prom 7808 - 7867 2.5 9 5 Op 1 . + CDS 7818 - 7898 59 ## 10 5 Op 2 . + CDS 7905 - 9347 2230 ## COG1376 Uncharacterized protein conserved in bacteria + Term 9435 - 9476 14.1 Predicted protein(s) >gi|292820520|gb|ACYT02000054.1| GENE 1 3 - 714 845 237 aa, chain - ## HITS:1 COG:Cgl1331 KEGG:ns NR:ns ## COG: Cgl1331 COG0524 # Protein_GI_number: 19552581 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Corynebacterium glutamicum # 4 225 9 229 307 131 44.0 9e-31 MSRVIVVGSINQDVTVTVDRFPNPGETLSGTSLTYGLGGKGANQAAAAAHSGVPVFFVGA VGADPSGQRLRAELASHGVDVTHLREVDGPSGTALITVNSSGENTIILDAGANATVTVEP AKASLFPAPADIVVLQAEIPAEANAEALAWAHSFGARILLNLAPARPTDATFMARVDVLI VNETEAGLTLGMPAPAGPTEAIGVAWALRGLGPKHVMVTLGADGAAWASGSEAGHFP >gi|292820520|gb|ACYT02000054.1| GENE 2 876 - 2333 1524 485 aa, chain + ## HITS:1 COG:SA0132 KEGG:ns NR:ns ## COG: SA0132 COG0477 # Protein_GI_number: 15925841 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 66 451 15 404 450 92 23.0 2e-18 MICGELIAVRTLRFFISSRSAGPTCRVATVPSQVIRGAASAPAVNLRTVATDGEYADGPA RVLLPLLGIYALGTVSLQGFNLVYLRVAQGIGAGDASGLITAIPGIVLGVACFLYGTLGD FIPLRRIVDVGIALIVAGSLLGFVFSSSLVGVIVARALQTLGYQAAASAYMILATAIRDP KKRGLYVGLMCAAFQGGTAIGMLAGGILADINWALLLLIPLAGLACLPIMGRRVPARARA GRVDVVGLAIFSSLALLLTLVAANPRWWLIAGLILGGVLFWRYIGRARAPFITRSFFTNV PWARSISLIVIVYCMNFTVAPLMNGIGAANYGLTPAQVSVRLLPAYCVALATAMTSGAVM ARIGRGRTVRACVTLILVGTALIALCMSMGPWVITAAMCFIYAGFGALFTPIYDTVFATV APGQNGRAVAMNDLAMQGSAAIGIGVFTPMLATGAFRAVALVCVVAAATGIAGDWLHEYL YRRGR >gi|292820520|gb|ACYT02000054.1| GENE 3 2411 - 2920 495 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191543|ref|ZP_06609222.1| ## NR: gi|293191543|ref|ZP_06609222.1| hypothetical protein HMPREF0970_01560 [Actinomyces odontolyticus F0309] # 1 169 1 169 169 324 100.0 1e-87 MNPWHAEQLQQAGQMHSIEDFGRDIEPALIQVRNELINENNFELRHGDDAISSQPTGDQT LYSLNSPTIYFLEDNVDKARTAFESHLTPLGFTVTVDEQMTDKEGKLTWIVARNPTYGIS ASAYIRDSKRSSFHYETEMLSSDGSTDDPQQLADIPGRRPDWLIPTPTT >gi|292820520|gb|ACYT02000054.1| GENE 4 3031 - 3615 416 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191544|ref|ZP_06609223.1| ## NR: gi|293191544|ref|ZP_06609223.1| hypothetical protein HMPREF0970_01561 [Actinomyces odontolyticus F0309] # 1 194 1 194 194 394 100.0 1e-108 MKKSLPLILSIFSVVLFTVSAITLYCGGFMNPFPPKVKTVEAFQRDLEPTIIAARNELLT AENFMAYKNGYQIDTYSKRGETICSFQSRTFFFAELDTDHIRDTYNKHLLPLGFKLSEKR WTSGGVELANFLWTNEEYHAVVTSTTRLGEQTAMFYYTQGTPTDGSTGNPPQLIDQPGRI PDWFDPNLPPADQK >gi|292820520|gb|ACYT02000054.1| GENE 5 3612 - 5255 1237 547 aa, chain - ## HITS:1 COG:no KEGG:Bcav_3284 NR:ns ## KEGG: Bcav_3284 # Name: not_defined # Def: protein of unknown function DUF1023 # Organism: B.cavernae # Pathway: not_defined # 80 543 82 544 569 172 30.0 2e-41 MKWTDIQQWESAPLQAYAVECENKQRKLQAEGDNLAADLESLSGSGQTVQAARSSLRQQI SSIERQVNHLISTAEICSAGAHGIDRLRANIDDALQLANTWGMSIDASGNVSMDATQVQK LVDEGKSRSELKSLVKTAQERVNTALKQAQELVESLSQKLAALEAGTFDNNVHYSATIKS RPTLPPADASPQEVASWWSSLSDEDKQWMIHEHPDVIGNLEGVDYTSRNEANRIMLPRLK EQAEADLQKFYDDNGPYIEPALRSERDRLKNRVTALEQIEETLERENTENPPVPRYLMQL DASGPNILAAVSQNNPDDADHIGVIVPGMTTSVADSLGEYDGHATTLRKSAETAATNGKK VAMVEFFGYDAPPGPAEASFTIMANNGAPKLASFLNGIDAVREHGAGDAHITVASHSYGS TTAGIAATLVNDGVIDDLVQFGSPGSGVQDVSEFHVPEGHTYVSAAPYENDMVQGLGPNP WFGKNPDTMDGYKHLSGDVGPTKWGLLPIGVIPIPIPKPFAQHSGYFEEETQANRDIASV IGGNPNV >gi|292820520|gb|ACYT02000054.1| GENE 6 5252 - 5368 86 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTYNTTHRLAEATMSNDSYTPGEHAPMGKVALGSVMKP >gi|292820520|gb|ACYT02000054.1| GENE 7 5439 - 6332 1054 297 aa, chain - ## HITS:1 COG:Cgl0443 KEGG:ns NR:ns ## COG: Cgl0443 COG1575 # Protein_GI_number: 19551693 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Corynebacterium glutamicum # 3 297 12 298 298 214 50.0 1e-55 MASVSDWIEGARLRTLPAAAAPVIVGSAGAHYLGGFSAARAALALLVALALQVGVNYAND YSDGIRGTDDNRKGPARLTGGGLAKPKTVLAAALGSFAVAGVAGLALVAVSGTWWLIAAG AAAVVAAWFYTGGKHPYAYLGIGLSELMVFVFFGLLACVGTAWTQVRSAPWWLWMSASAV GLLSVALLMANNIRDIPTDRESGKMTAAVRLGDRPSRWVFAACAWLPVAMIIVLGVAVGL HPLATGALGVGEGAWAAGVSLPVLTGASGRELITVLRNTGFFTLAWALLAALALILS >gi|292820520|gb|ACYT02000054.1| GENE 8 6376 - 7698 1382 440 aa, chain - ## HITS:1 COG:Cgl0445 KEGG:ns NR:ns ## COG: Cgl0445 COG0318 # Protein_GI_number: 19551695 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 94 426 61 374 376 173 37.0 7e-43 MTAPRLLVVPGGTAIGAVALANASIHKLVELYEERQADPNHPAPHTVVILRTPEDVPPAT LRGSAVAPEEAFPEDRYPGLAEAINADPHFFDGIDLVVPTSGSSAGSPRLVGLSIEALMA SAKTTELALEGPGRWILAMPAHHIAGAMILLRAAVAETNPQIVDTSEGFDPRALLPAIQG ATQDDMPGYLSLVPTQLAQCLDAGEEVVGPMRSLASILVGGAATNQQLLARATEAGLKVR LTYGMTETAGGCVYDGKPLPGTSVRAVDWDGRTRLAIHGPTLMTRYLDAESPFFDEGGHR WLLTGDLGIIRASGTVEVRGRADDVIVSGGLSIAPGPVRPAVRSFEGVSDAWIMGTPDEK WGHVVTALVVVDQMPSDSLEMAELGSAIREHAAAHIGRAQAPRRIVAVESLPYLGFDKID RAAAAQAAAEASGTEREWVR >gi|292820520|gb|ACYT02000054.1| GENE 9 7818 - 7898 59 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLSLWQTTQLKIQRYVPATAREAIR >gi|292820520|gb|ACYT02000054.1| GENE 10 7905 - 9347 2230 480 aa, chain + ## HITS:1 COG:sll0670 KEGG:ns NR:ns ## COG: sll0670 COG1376 # Protein_GI_number: 16331947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Synechocystis # 356 480 54 169 169 93 34.0 9e-19 MLKVLSLRTKWAIGVVSALVLLVVCAGVVYAANYSGRALPGTSVAGTSVAGMTRDQVVSA VNQRADATNVTLTVEGKTTKASLNEAGISVNADETADAAMKGSTSFPAFVSALFSERDIE PVVTVSEESIKKLAASVNSTLTSEMKDASVIVAQDGQSFTVTPAQMGNGVSAEDVAAAVK QAGATLTSVTQDVSVHQMEPSITTENAQAAAEKANALLETNIEISDGIDTFSAERSDKVQ WIEFLTKDDGSLDTPSISTVKVADWVNALAATTDVKPQNRVDNVDSSGNVLTVAREGKKG LKTNNTEQVTKDIIAAMTDGKAYEGLFHYDDVEPGSETKQVAEGTENLVYQAAEGEKWVD ISLADNSVTAYIGGKVAGGPYYMVPGAPDTPTVTGTFHVYLKYDVQTMRGENADGTKYET EGVPWVTYFTGSYAMHGAPWRSSFGWSGYGGSHGCVNMPVDAAKFIYDWTDMGDTVVVHY Prediction of potential genes in microbial genomes Time: Tue May 17 06:54:55 2011 Seq name: gi|292820511|gb|ACYT02000055.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.3, whole genome shotgun sequence Length of sequence - 6110 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 904 1268 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 2 1 Op 2 . + CDS 997 - 1443 626 ## Jden_2340 protein of unknown function DUF1469 3 1 Op 3 . + CDS 1440 - 1868 586 ## gi|293191577|ref|ZP_06609231.1| putative alanine-rich protein + Term 1886 - 1937 17.6 + Prom 1976 - 2035 2.5 4 2 Tu 1 . + CDS 2133 - 2381 359 ## gi|154508042|ref|ZP_02043684.1| hypothetical protein ACTODO_00532 + Term 2395 - 2431 8.6 - Term 2557 - 2596 11.2 5 3 Op 1 13/0.000 - CDS 2666 - 3826 720 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase - Term 3878 - 3919 10.1 6 3 Op 2 . - CDS 3926 - 5497 2135 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 7 3 Op 3 . - CDS 5502 - 5702 109 ## gi|293191581|ref|ZP_06609235.1| lipoyl synthase 2 8 4 Tu 1 . + CDS 5674 - 6109 584 ## Cfla_0207 protein of unknown function DUF224 cysteine-rich region domain protein Predicted protein(s) >gi|292820511|gb|ACYT02000055.1| GENE 1 2 - 904 1268 300 aa, chain + ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 6 145 81 223 290 61 31.0 2e-09 LAARLAGRIGSVALIRADSPLDESLTIRQNILAPLSATGSVADWDNLVGALQITGLAQRV EVHPSELSEWERFKALIARAIVSGAEVFLIEDPVSLPAAAREELGPLLRSLADAGCAVVI ATPNAEVAAASDRAILLTNGRVALDAPNPSAAIIAASLEANPEDPKALLGPIPSALPASF DEVISPTGSASAPAWHPLGTSDEAGAQTSDAQQASEPEETDPAEAALDAATTRVEAAPAQ TTQSTEVPQASPEPRTETAMRGIPVVEAEDPALAEPEVSDLVVRARKILSDLPGSIAPQE >gi|292820511|gb|ACYT02000055.1| GENE 2 997 - 1443 626 148 aa, chain + ## HITS:1 COG:no KEGG:Jden_2340 NR:ns ## KEGG: Jden_2340 # Name: not_defined # Def: protein of unknown function DUF1469 # Organism: J.denitrificans # Pathway: not_defined # 1 146 1 156 157 88 41.0 6e-17 MTQPTPQPGQYPPAAPAPAAGEARPSIGALFASVTGQISSIIRDEVELNKAKLRAFASKS GKGIGLLVAAAVFALYLLGWVFHTIEVALKLVVPAWAASLIVVGILLLIVLILALVGVSS LKSAQAHRPDPAASVAATKEAIEKGLGK >gi|292820511|gb|ACYT02000055.1| GENE 3 1440 - 1868 586 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191577|ref|ZP_06609231.1| ## NR: gi|293191577|ref|ZP_06609231.1| putative alanine-rich protein [Actinomyces odontolyticus F0309] # 1 142 1 142 142 149 100.0 6e-35 MSTNLDTRNVTVGEAAPAEPRTEAQITADLERQRAELAATIDQLYARVQPAALAQEAKEE ASARFASFKESASLTLQDAAGGNAEALKKIGVVALSAVGAIGVIVLLATRSSRRSRREAR RAAREAAAHTLQALKSDVTEAL >gi|292820511|gb|ACYT02000055.1| GENE 4 2133 - 2381 359 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508042|ref|ZP_02043684.1| ## NR: gi|154508042|ref|ZP_02043684.1| hypothetical protein ACTODO_00532 [Actinomyces odontolyticus ATCC 17982] # 1 82 11 92 92 119 100.0 9e-26 MKVARKLKYFSPDTDLNALQRELADEDSYLAHVPADEPEEDDAIDDDLYSKYADFAEMPA EEDDIDPEQLDESFWTGGSSTK >gi|292820511|gb|ACYT02000055.1| GENE 5 2666 - 3826 720 386 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 6 338 12 337 356 281 44 7e-76 MTDIPLDYATAGVDTAAGDRAVELMKSAVAATHDSTVLGATGGFAGMVDASALLGMQKPL LATSTDGVGTKIAIAQAMDVHDTIGQDLVGMVVDDIVVIGARPVLMTDYIACGHVVPERI ASIVTGIARACEATGTPLIGGETAEHPGVMEPDDYDIAGAATGVVDASKLLGPERVADGD VVIAMASSGLHSNGYSLVRSVVSRVGASLESHVAEFGRTLGEELLEPTRLYTRPCLDLVE RFGVGGIHAYSHVTGGGLAANLSRVLPQGAIATVDRSTWTIPAVFDWVRRGGDVTWVGME DSLNLGVGMVAVVSASVASEVLSAINESGVAAWVLGSVTSAGADGTVAGFGSVSDLGADS SGVRLISGTKGVQAGAVLLHGEYRVG >gi|292820511|gb|ACYT02000055.1| GENE 6 3926 - 5497 2135 523 aa, chain - ## HITS:1 COG:MT0829 KEGG:ns NR:ns ## COG: MT0829 COG0034 # Protein_GI_number: 15840220 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 20 512 29 494 527 560 59.0 1e-159 MLPVSQPDTTLSDQELFGDDHPHDHCGVFGVWAPGEDVSRLTYFSLYALQHRGQQSAGIA TSNGKQILVYKDQGLVSQVFSEQSLQGLRGHIALGHVRYATTGADVWRNAQPTLGPTPTG TLALAHNGNLTNTAELRELAVEIADDGEDFERGASTDTSLVTALLGMADRIPGPTPFIAS PSVTPSETDGDEAAPASSLAEDLEPAPLVGAALKVLPRIKGAFSLVFMDENTLYAARDPH GYRPLVLGRLASGWVVASETAALDLCGATFVREVEPGELISIDASGVHSRRFAVRRSNTC VFEYVYLARPDTTIGGRRIVAARHEMGAALARENPIEADLVIPTPDSGTPAAIGYAQESG IPFAQGLVKNAYVGRTFIQPTQSLRQLGIRLKLNPLREVIEGKRLVVIDDSIVRGNTQRA LVKMLREAGAAEVHIRISSPPVLWPCFFGIDFPTRAELIASSMSVEQVRESIGADSLAYL SIYGMVGATGQGTSLCIGCFTGEYPETIPAGTPVPGTPDATPC >gi|292820511|gb|ACYT02000055.1| GENE 7 5502 - 5702 109 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191581|ref|ZP_06609235.1| ## NR: gi|293191581|ref|ZP_06609235.1| lipoyl synthase 2 [Actinomyces odontolyticus F0309] # 2 66 1 65 65 124 100.0 1e-27 MMALSVGLATFPPQDCCTPLCHLDTGENGSAPQSVRNYALRVMFAGPACVRHNVDTCHGL GKSVGE >gi|292820511|gb|ACYT02000055.1| GENE 8 5674 - 6109 584 145 aa, chain + ## HITS:1 COG:no KEGG:Cfla_0207 NR:ns ## KEGG: Cfla_0207 # Name: not_defined # Def: protein of unknown function DUF224 cysteine-rich region domain protein # Organism: C.flavigena # Pathway: not_defined # 25 137 23 135 774 114 55.0 1e-24 MANPTLSAIMWGLALLVSAVAVLSFARGLTHMWRTVSAGTPDPGRLGPVGKRLWGVVSAA LTHREFKGRPWIKAAHWLVMVSFPILFLTLITGYAQLRVQTFTLPLLGHFAPWEWLTEVF AWGGLAGIIALMVVRQRAGRGTAAE Prediction of potential genes in microbial genomes Time: Tue May 17 06:55:21 2011 Seq name: gi|292820498|gb|ACYT02000056.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.31, whole genome shotgun sequence Length of sequence - 14137 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 6, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 199 - 465 58 ## 2 2 Tu 1 . - CDS 961 - 2091 1297 ## COG1940 Transcriptional regulator/sugar kinase - Prom 2112 - 2171 2.8 + Prom 2126 - 2185 3.4 3 3 Op 1 35/0.000 + CDS 2230 - 3534 1904 ## COG1653 ABC-type sugar transport system, periplasmic component 4 3 Op 2 38/0.000 + CDS 3604 - 4539 928 ## COG1175 ABC-type sugar transport systems, permease components 5 3 Op 3 . + CDS 4557 - 5381 983 ## COG0395 ABC-type sugar transport system, permease component 6 3 Op 4 . + CDS 5387 - 6949 1486 ## Teth514_0759 hypothetical protein 7 3 Op 5 . + CDS 6936 - 8669 1946 ## COG0366 Glycosidases + Term 8685 - 8731 11.5 8 4 Tu 1 . + CDS 8863 - 11418 2707 ## Anae109_3331 carbohydrate-binding family 6 protein 9 5 Tu 1 . - CDS 11423 - 12403 1352 ## COG0447 Dihydroxynaphthoic acid synthase + Prom 12672 - 12731 1.9 10 6 Op 1 1/0.500 + CDS 12751 - 13809 970 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 11 6 Op 2 . + CDS 13819 - 14137 343 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Predicted protein(s) >gi|292820498|gb|ACYT02000056.1| GENE 1 199 - 465 58 88 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGHFRANSNLQRCWRFQWGAQRGVQRCWRFQSWSVIASCARKSSPRISRSCRGARKSSP CKPKTGEKRCLLVRWASFSRKNRCKLSS >gi|292820498|gb|ACYT02000056.1| GENE 2 961 - 2091 1297 376 aa, chain - ## HITS:1 COG:SMa2303 KEGG:ns NR:ns ## COG: SMa2303 COG1940 # Protein_GI_number: 16263693 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Sinorhizobium meliloti # 21 368 45 396 408 132 28.0 1e-30 MTWQPKDELASAVALEVLIHGPLGRAELARRLGLAPATLTRISTELIASGLLAEVPEATQ RTSGRPTIPLDVVPSSHYFLGIKLTDSALDATVIDLKATPRDSYRVPLDSLTPIRVIRAI ADLTHRARSAYRIDAIGIAVGGIVNADGTVESAPFLKWHDVPLASLVSEATRLPAFVAND LSAYTQIQHWFGSGTGHSNFAVITVGVGVGYGCVANGARLENEDSGIGLVGHWPLDPLGP ICSQGHRGCAEAMLTTPAICRDASAAVGRPLEWNDVITLASEKHPAVEAILAASGRALGR LIGLVASLTAPELVIIGGEGVALASLSGDAVREGIGEVRDPRATSIRVTLSDGSNEAWSR GAGVIALQGYIAARAA >gi|292820498|gb|ACYT02000056.1| GENE 3 2230 - 3534 1904 434 aa, chain + ## HITS:1 COG:alr4277 KEGG:ns NR:ns ## COG: alr4277 COG1653 # Protein_GI_number: 17231769 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 43 427 65 457 461 112 24.0 1e-24 MKQKRLLTVGVTLFAAASMLAACGGNTADQSSSSDSGSGSSTVELTLWGTYGAGSNSAQK DALEKEIIPAFEKANPGITIKYVDMPYDGLKQKLTTGAAAGELPDLIRTDLGWNAQFAKL GVLKQLDGNMPNYDALAAKVYPGLLGTTLYNGHHYGLPLDTNTRVLISNPDALSKLGVDK APETFDELKDLAAKAKDAGGSVYAFADGDISQWNIMPWIWSAGGDIADPDQTKASGYLDS DKSVAGVQFLVDLYKEGQIPNAIIGNEGATKTQDGMPNGEYATILDGPWMDQIWAGSYPD FKPTYSKVPAGEGGSISVVGGESIVITEQTKDLEASYKFLEFTQSREFQLPMSKAGQMTV VAEYAAEEAEATPGTKIFSEQLKTAKSRLSIPDSGKVDEILKTELTPAFEGKVTVKEALT KAAQQIDPLLSAAK >gi|292820498|gb|ACYT02000056.1| GENE 4 3604 - 4539 928 311 aa, chain + ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 28 284 15 268 292 185 39.0 1e-46 MSTPTADEAVAPRARRRSSRRNPVAPYLFLAPGMILFALCVLYPMVRSGQMSFYDWNIVK GSNSDFVGLDNYVKAFHDPSFWTGLGNSGIYMALTVPPQIILGLAVAMLLRSKAPLQPLF RVLYYLPVVTSWVVVSLLFKYLFADQGLINYMLGSAHLGAGDTSWLSNRWTAMIAICALG VWKGIGWSMMIFLAALQGVPKELEEAALVDGANWWQRFKAVTVPAIWPATVFVIVMLVIG GLNVFTSVLLMTKGGPNGQTEVLLTYMYRLAFSDLNFGYGSAIAVVLTILVFIISIVQLK VLNRDDERAGA >gi|292820498|gb|ACYT02000056.1| GENE 5 4557 - 5381 983 274 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 8 273 18 281 282 183 39.0 3e-46 MHAAGTSLRFVVLTVGAIVMILPFAYMVSTAFKPQAYVLETPPKFIPDPGTVDNFVQAWT TQDFSRYALNSAFVSVTSTVLAVWLSSMMAYAFARFDFPCKEWFFRALLLGLMIPSMMLI IPQFVLTKQLHLIDNLWALVLFYVSGNLALNTFLLRSFFEGIPRELDEAMEVDGANVWTR YWRLAMPLARPALATTVIFTFLATWDEFAWALTVISTETKRTLPIAIQLFHGQNSTQWGL VFAASLIAILPVIVVYLIFQRHFVAGLTAGAVKG >gi|292820498|gb|ACYT02000056.1| GENE 6 5387 - 6949 1486 520 aa, chain + ## HITS:1 COG:no KEGG:Teth514_0759 NR:ns ## KEGG: Teth514_0759 # Name: not_defined # Def: hypothetical protein # Organism: Thermoanaerobacter_X514 # Pathway: not_defined # 4 519 8 563 566 196 28.0 2e-48 MLLPTQSVYLPGQAVLVEASHPGDLVITHLGETVREVRCERPGLVDLGELSVGGYGVAQP ATGASSALQVCASASDRLRYGFVASFRPGKDVEAVARFARRLHLTGIQFYDWAYRHADLL GGGEEYLDALDQPISLATVRALIEALRAVGTRSIGYAAVYGVGNDEWEQWEDAALLDPAG EPYSLADFLRIVDPAHPRWLAHFAADVAAAAREVGFDGFHLDQYGCPKAAVRPNGEVVDV ASSFDTLIRGVREAVPGSTLVFNNVNDFPTWSSPSAPQDAVYIEPWEPVTTYEALARVAT RARLVGGGKPVVLAAYQAIYDKAARDVGDASTRLTMATLFSHGATQLLAGEDGHILVDPY YVRNMPAEDETLDMLASWYDFLVANDEILVDPGIVDVTASYVGAYNADIDVSFDEAPVCW EAAPGCVWRRVTRAGDALVVHLINLVGQSDTVWDGSHRSAIALRGGTLRLKPLFGRVPRV AAADPDAGSTLIPLDVRIVDGQAVVSLPDLNVWQVLHVLL >gi|292820498|gb|ACYT02000056.1| GENE 7 6936 - 8669 1946 577 aa, chain + ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 19 576 4 557 561 579 51.0 1e-165 MFFCNDALNPAGNGLGPDEWWKGAVVYQIYPRSFKDSNGDGIGDLEGIRSKLDYLQALGV DVLWLSPIYASPQADNGYDIADYYDIDPMFGTLSDFDRLLEGVHERGMRLVMDLVVNHSS DENPWFVESRSSRESPKRDWYIWRDPRPGCVGGDAGAEPNNWGSFFSGSAWAWDEATGQY YLHLFHKKQPDLNWENPQVRAAVYEMMNWWLDRGVDGFRMDVINLISKDPGLPDGVVYPG RAWGEGFPHFSEGPHLHEYLAEMRREVFDGRAGTMTVGECPGVRRDNVLLFTDPARCELD MVFQFDHVDLGLEAGKFHPRPLRPGELADCLTQWQEAQGEVGWNSLYLDNHDQPRAVSRF GDEAWRYESATALATALHMLRGTPYVYQGEELGMTNSVFGGIDDYRDVEALRYYREAVES GESPESVLKGLAFTGRDNARTPVQWDASENAGFTQGTPWIGVTPNYRDINAASQVDDPSS VYAYYRALADIRHGLPVIAVGAFERIAAPSPAIFAYRRTLGEAVATVLVNLSSQSAPLGE AARGVSGDLLLANRDLPEGDRGVPETLGEWEALVYIR >gi|292820498|gb|ACYT02000056.1| GENE 8 8863 - 11418 2707 851 aa, chain + ## HITS:1 COG:no KEGG:Anae109_3331 NR:ns ## KEGG: Anae109_3331 # Name: not_defined # Def: carbohydrate-binding family 6 protein # Organism: Anaeromyxobacter_Fw109-5 # Pathway: not_defined # 42 718 45 732 747 307 30.0 1e-81 MKSRVLTAKVAIVATAAATAAGIIGMVTPAHAQAQITRVWTENARYLPNQSVDVTAQVTG ASHVRFRLMHLGEQVMASDDRPVDGSGRASWEFSAPDRDYTGYVIEADSDNGAQGETALD VSSDPYRYLRFGFLDSYPEGMSGADQQRIVDDLAQKYHINALQFYDWMYRHEAPVPYDGN GVAPTWSSWGGEKMSRDTITGLINAAQWRSVEAYPYSMSYAALNGYESYGVSPDWRLTYR SSGSPWSFEMLANRPDSTLWIMDPSNPAWRSHIVSQYVHQSEDIGFDGTHLDQLGDWGHS EDHQGGMATTGGVPVDLPKAFGTLIDQTMDATGKPVGMNAVDGFGMDHMAAGSATYEYTE MWDSHERYEEVQNYLQQQRILSGNKPAVVAGYVNNKWNNGPGYEAEASTVSRTGVQVATD HRDYSGTGFIDHFGERGDSVTFRVHVDASRNYGLVPRWSNATGDIAARTFSVDGRVVSRN VLLGLTQDWDHWNIEGGTWAYLTQGDHTVTISVDEGDYGYINLDELHINSFSTPSVQLFD AALAANGASHIEMGQGDRMIAAAYFPDRTKWMDEELTQWISRYYDVTTGYEELFYGPTLR PLDDSIVEIPGYNVSRNGLKNTIYARVMRSGGMDVIHLINLLGNDEFWRDPGNSVTDTGS FTVRYHYGDSPTPGTVYKVTPDTERGTRAVALPSRLGTDEAGNYVDIDVDNLHAWDVLYM GQNTAGNGNVVNQGQKCMDVREGASANGTPIQLYDCASVPAQRVTYDGNTLSVMGKCVDL EYQGTENGTYTHLWDCNGAPSQTWHYTPRNQYYNPHSGKCLTLDADHYANGNRLTVWDCN GGATQKWSKPQ >gi|292820498|gb|ACYT02000056.1| GENE 9 11423 - 12403 1352 326 aa, chain - ## HITS:1 COG:Cgl0456 KEGG:ns NR:ns ## COG: Cgl0456 COG0447 # Protein_GI_number: 19551706 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Corynebacterium glutamicum # 9 326 8 319 319 375 62.0 1e-104 MSALPFVSDTFDPTRWREVKGFDFADITYHRGISRGPEADGRPEGADMPVVRIAFDRPDI RNAFRPGTVDELYRALDHARQNSSVAAVILTGNGPSTRDGGYSFCSGGDQRVRGRDGYRY EVEGADPEAATAQRREQIDPARAGRLHILEVQRLIRTMPKVVIAAVPGWAAGGGHSLNVV ADLSVASIEHAAFMQTDANVGSFDAGYGSALLARQAGDKRAREIFFLAERYDAETAERWG VINRAVPHAELEETALEWAATIATKSPQAIRMLKFAFNLADDGLAGQQVFAGEATRMAYM TAEAQEGRDAFLEHRAPRWEDYPYYY >gi|292820498|gb|ACYT02000056.1| GENE 10 12751 - 13809 970 352 aa, chain + ## HITS:1 COG:ML2268 KEGG:ns NR:ns ## COG: ML2268 COG4948 # Protein_GI_number: 15828213 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Mycobacterium leprae # 26 319 7 290 334 221 48.0 2e-57 MNAAQQPTLMRIPMRTLSRQTRYALEGVDDILVYKVGMTTRFRGVTRREGLLLHGHAGWG EAAPFWNYDDLESSRWLAAALESARRFPPVPRRKFVPVNVTIPVISPEEAHERVKGSGGC ATAKIKVAEPGVSVGRDCARIAAVADALRETVGGQAMIRLDANGAWEVDQAREAIPAMAA AAGVVPIEYVEQPCLTVDELAQVRRSVDVPIAADESIRRAEDPLEVARKEAADVVIIKVA PLGGVRAALKVARKSGLGVVVSSALETSVGLSVGVAAAAAVPGVPRAAGLATASLLVGDV TQPLIPERGCLPVRRLEPDQELIDRTPVDGDLVSRWGMRLEGMAEHLRVGSR >gi|292820498|gb|ACYT02000056.1| GENE 11 13819 - 14137 343 106 aa, chain + ## HITS:1 COG:alr0312 KEGG:ns NR:ns ## COG: alr0312 COG1165 # Protein_GI_number: 17227808 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Nostoc sp. PCC 7120 # 13 106 23 117 587 87 49.0 4e-18 MPSVDTASAILSSLDTLGVTHVLYCPGSRSAPFAYALEAGSFSGDARPILDERGAGFAAV GLARTGALPAIVVTSGTAVAELAPAVLEASHARLPLLVVSADRPGE Prediction of potential genes in microbial genomes Time: Tue May 17 06:55:44 2011 Seq name: gi|292820495|gb|ACYT02000057.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.32, whole genome shotgun sequence Length of sequence - 1641 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1336 1175 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 2 2 Tu 1 . + CDS 1459 - 1639 130 ## gi|154508614|ref|ZP_02044256.1| hypothetical protein ACTODO_01115 Predicted protein(s) >gi|292820495|gb|ACYT02000057.1| GENE 1 2 - 1336 1175 444 aa, chain + ## HITS:1 COG:ML2270 KEGG:ns NR:ns ## COG: ML2270 COG1165 # Protein_GI_number: 15828215 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Mycobacterium leprae # 2 433 115 544 556 146 32.0 1e-34 VGASQATHQSGFFGMHVRASIDLEHQEASPSLVGHLARAVAAACGAPSGTPGPVQINVAF RDPLTPVRPASDSGDEVGASFVPRPTRVMGAPAVPARWEDVVGPAVAGLIVAGEGASPRA REWSEASGFPLLAEPASGAWRGGGVTPFEQSLVSSPLGREVDAVVVTGRPTLSRPIQALL ACPGVRVVVVDAHAPWVDISGNASVVVADLEPARELIRAAQAEWASRVREAARDADERIE SLLASGSGRTMLDLARSVAASTSGPLVLGASNPVRAFDLAVPTLEGRIVHSNRGQAGIDG TVATAVGICMGSGYAGEASAPAGERVTAVMGDLTACHDASSLALAASVDAHLDIIVADDQ GGGIFATLEHGRATSAEAYDRWFGLAQSVDYEALAAAYGVAFVRADAPRELESLLAHPAN GPRLIHAPVERAAHLYPAVRDVLS >gi|292820495|gb|ACYT02000057.1| GENE 2 1459 - 1639 130 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508614|ref|ZP_02044256.1| ## NR: gi|154508614|ref|ZP_02044256.1| hypothetical protein ACTODO_01115 [Actinomyces odontolyticus ATCC 17982] # 1 60 1 60 498 92 91.0 6e-18 MTQPHIPAHDGDSARDAETASAPSYPQRSTAQDHSATQELPAAQDATREMPSATTIPAPP Prediction of potential genes in microbial genomes Time: Tue May 17 06:55:58 2011 Seq name: gi|292820465|gb|ACYT02000058.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.33, whole genome shotgun sequence Length of sequence - 27209 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 8, operones - 6 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1228 1696 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 1246 - 1289 11.9 2 2 Tu 1 . - CDS 1298 - 2584 1249 ## COG1169 Isochorismate synthase 3 3 Op 1 . + CDS 2583 - 3290 364 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 4 3 Op 2 . + CDS 3345 - 3458 105 ## gi|293192593|ref|ZP_06609547.1| PE_PGRS family protein 5 3 Op 3 . + CDS 3452 - 4636 1099 ## COG1404 Subtilisin-like serine proteases - Term 4632 - 4656 -1.0 6 4 Op 1 . - CDS 4788 - 5276 585 ## Sked_01980 hypothetical protein 7 4 Op 2 . - CDS 5316 - 5627 343 ## AAur_pTC20232 hypothetical protein 8 4 Op 3 . - CDS 5546 - 5785 130 ## gi|154508630|ref|ZP_02044272.1| hypothetical protein ACTODO_01131 - Prom 5927 - 5986 3.2 9 5 Op 1 . + CDS 5925 - 6044 56 ## 10 5 Op 2 . + CDS 6120 - 7295 951 ## COG0673 Predicted dehydrogenases and related proteins 11 5 Op 3 . + CDS 7338 - 8210 1028 ## COG2222 Predicted phosphosugar isomerases 12 5 Op 4 . + CDS 8207 - 9100 250 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 13 5 Op 5 2/0.000 + CDS 9097 - 10038 493 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 14 5 Op 6 . + CDS 10075 - 10923 844 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 10940 - 10977 10.8 - Term 10927 - 10965 11.0 15 6 Op 1 . - CDS 10979 - 12139 1257 ## COG1940 Transcriptional regulator/sugar kinase 16 6 Op 2 . - CDS 12236 - 13921 1803 ## Sked_01980 hypothetical protein - Prom 13973 - 14032 3.5 + Prom 13993 - 14052 6.3 17 7 Op 1 38/0.000 + CDS 14075 - 15082 1172 ## COG1175 ABC-type sugar transport systems, permease components 18 7 Op 2 14/0.000 + CDS 15093 - 15971 1288 ## COG0395 ABC-type sugar transport system, permease component 19 7 Op 3 1/0.000 + CDS 16005 - 17363 2263 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 17371 - 17418 13.3 20 8 Op 1 . + CDS 17473 - 18969 1521 ## COG3345 Alpha-galactosidase 21 8 Op 2 . + CDS 18992 - 19201 175 ## gi|293191714|ref|ZP_06609271.1| conserved hypothetical protein 22 8 Op 3 . + CDS 19275 - 20555 1533 ## COG0644 Dehydrogenases (flavoproteins) 23 8 Op 4 30/0.000 + CDS 20584 - 20943 192 ## PROTEIN SUPPORTED gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A 24 8 Op 5 34/0.000 + CDS 20957 - 21520 456 ## PROTEIN SUPPORTED gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B 25 8 Op 6 22/0.000 + CDS 21517 - 22254 1113 ## COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit 26 8 Op 7 15/0.000 + CDS 22254 - 23600 2133 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 27 8 Op 8 23/0.000 + CDS 23597 - 24307 898 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 28 8 Op 9 12/0.000 + CDS 24304 - 25608 1412 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 29 8 Op 10 . + CDS 25605 - 27207 2154 ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Predicted protein(s) >gi|292820465|gb|ACYT02000058.1| GENE 1 2 - 1228 1696 408 aa, chain + ## HITS:1 COG:Cgl0852 KEGG:ns NR:ns ## COG: Cgl0852 COG0265 # Protein_GI_number: 19552102 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Corynebacterium glutamicum # 49 407 96 436 441 180 41.0 4e-45 EAPASGGTYSAPSGEPYGGYAAPASPDAFASPTVIVTKKGPGWVALLGAMLLTIGLTLGA VFYARPAMLRASTPTNLNGGTVATVPVSNGSGTDWTDVAAAVSPAVVTIQAQGASSGGTG SGVVYDAQGDIVTNYHVIASALGGGQIQVTLADGRLYSAVVVGHDKTTDLAVIRLENPPS DLTVARFATSANLEVGAPVMAIGAPLGLSNTVTTGIVSALNRPVEVSMDESATSEDGTQA SSDLVVTNAIQIDASINPGNSGGPLFDASGAVIGINSSIKSLSSSSDGQAGSIGLGFAIP SDLVVSIADQLIASGSASHGMLGVTVKAATTTVGSDTYVGAEVQDVSAGSGASAAGIRAG DVIVKVEGQEVTSPKQLIGYVRRYKAGDTVTMTIVRDGATQDVSVRIQ >gi|292820465|gb|ACYT02000058.1| GENE 2 1298 - 2584 1249 428 aa, chain - ## HITS:1 COG:BS_menF KEGG:ns NR:ns ## COG: BS_menF COG1169 # Protein_GI_number: 16080135 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Bacillus subtilis # 103 427 113 467 471 167 32.0 4e-41 MRQYSHVFQRAAAPAPTMEPMHNDFGCSRLVFRALVLPPQHPGSTCSLTSLLPDSGGSAW LGDRRQMIGLGRALTIESATPGAIADVRRAWEAAPASSCVEGAPSPVLFASFAFRSPARS VAFVPALTLIDEAGARWAITAGIGDAPDPLAAVDEALAEARPAPRVPESLTFGHGSMSRG QWRDSVRAMAQRLRDGAADKAVMARDMTVRCPHGFDERFLLERLSDLYPSTWRFCVDSLV GASPEMLIAASHGTASSRVLAGTCKPGEGEMLASSAKDLREHDLASESVSSILMQLCSSV TTQGPFLLSLPNVVHLATDVHARLGEAHLLDLVAALHPTAAVCGTPRPAAMRLIEELEDT ERGRYSGPVGWVDTAGDGEFAISLRCGLTSGTRLRLFAGAGIMPDSDPDAELAETEAKMR PLLDALGV >gi|292820465|gb|ACYT02000058.1| GENE 3 2583 - 3290 364 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 19 232 1 221 221 144 36 5e-34 MTESQRADLNKDPKEIASMFDSLASRYDVMDALMTGGLDRVWMTALRKAVAPHPGERILD LAAGTGASSAALAKGGAEVVACDLSEGMIEVGRERHPEIEFVHGNAMDLDFEDGSFDAVT ISWGLRNIPDPELALREMARVVRPRGRLVVLEFSTPPSRVFRGMYNAYQSTVMPAIARLV STNDGAYDYLVESIRAWPAQEELGRMIAANGWSEVEYRNLTGGIACMHRAVKPLP >gi|292820465|gb|ACYT02000058.1| GENE 4 3345 - 3458 105 37 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192593|ref|ZP_06609547.1| ## NR: gi|293192593|ref|ZP_06609547.1| PE_PGRS family protein [Actinomyces odontolyticus F0309] # 4 37 481 514 514 68 91.0 9e-11 MSRLPEGYVNPMSQTYGSDKDLTPAKREDDGWDPRQW >gi|292820465|gb|ACYT02000058.1| GENE 5 3452 - 4636 1099 394 aa, chain + ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 48 295 101 339 361 87 32.0 6e-17 MVTPTHKVSRVSLAVASASAFALGLVAVPVAPAQAADTITAADQPYFAYYHLEQARAKGY TGQGVTIAMIDGPVDVTAPELRDAHITDKSPCTVDASIESKNHGTAVASVLVAGEYGVAP KASLLSYVNVDKTSAVGSDCVTPEGLDLTSVASLINHAINDGASIITNATGSKDHGNGIK WAVARAISQGVIITDAIGNEARDETADGLSYWSGVVGVSAVDTNGARATYSSWGQGVTTA AVGGPLTAREYPSGSLAQSNGTSISTPIVAGFLAMARQKWPDATSNQLLQLLIHTTVNPD GGWNQYTGYGVASPATMMNTDPSQYPDVNPLADKGGGSSPTPEEIAQYVDGVVPPAEIVF DNSYSYRGLDESVLGATTNPYPTHLGTSPRYHAK >gi|292820465|gb|ACYT02000058.1| GENE 6 4788 - 5276 585 162 aa, chain - ## HITS:1 COG:no KEGG:Sked_01980 NR:ns ## KEGG: Sked_01980 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 9 152 357 495 578 79 31.0 4e-14 MKKQGEEDAWQHAPIGGELTRAKAASAAMGYTLQETRTSVTYNQVKATVVVEIKNTGVAP FYATWPLEVILVDENNEIVTTQTIESTLPSILPDQTGKVTARLPLPEKFRSNDSAQKLTA VIRVENPLPNGAPVAFANKAMNKPLPGYLELGKLTRGRAPKN >gi|292820465|gb|ACYT02000058.1| GENE 7 5316 - 5627 343 103 aa, chain - ## HITS:1 COG:no KEGG:AAur_pTC20232 NR:ns ## KEGG: AAur_pTC20232 # Name: not_defined # Def: hypothetical protein # Organism: A.aurescens # Pathway: not_defined # 20 85 1 66 402 79 56.0 4e-14 MGARGREGARNGRNALPYTLEWAPFPVNTVVTGRDTYDLTKVDALLDAIASRGHQAVIRF TLDTPGKKTGMPQYLIDAGTDTSRYPTAVTKAHGMGYYDDSLG >gi|292820465|gb|ACYT02000058.1| GENE 8 5546 - 5785 130 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508630|ref|ZP_02044272.1| ## NR: gi|154508630|ref|ZP_02044272.1| hypothetical protein ACTODO_01131 [Actinomyces odontolyticus ATCC 17982] # 1 65 1 65 561 67 58.0 4e-10 MRTSTRIAIALAATAGLVGATLPATASSAATPQWTDLKDAPAPVSNPMKGFMPWAPEDGR APGTVATPCPTRSNGHPSP >gi|292820465|gb|ACYT02000058.1| GENE 9 5925 - 6044 56 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRAILRKSVSVSDFMTSVCVWVCGLCVAADVRGFVEAIC >gi|292820465|gb|ACYT02000058.1| GENE 10 6120 - 7295 951 391 aa, chain + ## HITS:1 COG:SMb21148 KEGG:ns NR:ns ## COG: SMb21148 COG0673 # Protein_GI_number: 16264562 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Sinorhizobium meliloti # 5 354 1 351 386 102 29.0 1e-21 MNAPLRVGVVGLGARSSIAHHLASVTHPAVLVGGCDPNPAMRERATRTLGEGQWVATLEE LLGLSIDAAIVTSPDDTHEDVTCSLLEAGVAVFLEKPIAITIEGADRVLETAYRTCTPLY VGHNMRHMDVVRTLRRVIQEGRIGEVKAIWCRHFVGNGGDYYFKDWHADRSRTTGLLLQK AAHDIDVMNWLSDSVPTRVVAMGDLMVYGALADRSGQSDGAVMEDWFSFDNWPPETQTGL NPVIDVEDLSMLLARQENGVMISYEQCHFTPDYWRNYTVIGTRGRAENFGDGEGGSVRVW AHRSGYEPVPDLEIPLRGDAGGHGDADVNTMDEFIRFVVNGDVTDTTPLGAREAVAAGVA ATTSLRGGNVPVDVPRVRPEIAEYFNRNQLR >gi|292820465|gb|ACYT02000058.1| GENE 11 7338 - 8210 1028 290 aa, chain + ## HITS:1 COG:PH0510 KEGG:ns NR:ns ## COG: PH0510 COG2222 # Protein_GI_number: 14590413 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Pyrococcus horikoshii # 4 287 10 323 325 85 26.0 9e-17 MSCTHDEIVSQPDLWRRVAELSTDPLPADGEHIAVVGCGTSWFIAQAYTVYRERAGKGAG DAYTATEFPWGRTFDRVICLSRSGTTTEIIQVMKRLHEEGRPALLITAVAGGPAAEYASE EVVLDFADETSVVQTRFATSALQYFLGSLGHDVGASAADAERALAMEIPSRWVDADQISF LGTEWTIGLAAEAGLKLREASQSWTEVYPAMEYRHGPISIAQPGRLTWVFGPVPDGLAEQ VHETGAELVTFDGCPIAHLVLAQRLAVECALARGLNPDTPRNLTRSVILP >gi|292820465|gb|ACYT02000058.1| GENE 12 8207 - 9100 250 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 7 289 7 313 323 100 28 8e-21 MNTLGVGVDVGGTTIKAVLAGDDGVVRERVDPAPTPHTGAEDVARVVASMAKPLLALAGP GAALGVCVPGIVDEERGMGVFSANLGWHRAPLRDLIAHLCGCPVAFGHDVRSGALAEARW GVGVPDCLYVAVGTGIASGLVLGGHLSPSRPWTGEIGQVGVAHPATGVTVPLESVSSASA IAGRAADAGIVPEGAGARDVEDAAVTGSQEAVRILDEAMGALGHVLSVVAHQVGSIPIVL GGGLSRGGELIYGPLRRALTLGSIVAPPPALLRARLGADSQALGAVALSLELEEVYA >gi|292820465|gb|ACYT02000058.1| GENE 13 9097 - 10038 493 313 aa, chain + ## HITS:1 COG:SP1191 KEGG:ns NR:ns ## COG: SP1191 COG1105 # Protein_GI_number: 15901056 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Streptococcus pneumoniae TIGR4 # 1 282 1 292 309 118 31.0 1e-26 MIYTVTPNPALDITWGVPGWERGSTTRVTDIMESPGGKGLNVARVADQLGASACALGPLG GATGERVRELFASLAPRVQTRWVASPVPTRRSVALVDEQVSIFNEAGQAPPREVWSRCAE FLASVLTPGDVCAICGSLPGDSCASDITPIFEAAKASGARIILDTSGTALVDAASYADVL KPNEHELRAVTGCSTIDEGARMLLGLGASWVFVSRGADGMDLYSHGGSWYASSDPTITGN PTGAGDAAVAAIATHLEGRLLMTENDGVMALTDAVATSTAAVVRPTAGEIDMSVRASVLQ STAPVRLSPLPIH >gi|292820465|gb|ACYT02000058.1| GENE 14 10075 - 10923 844 282 aa, chain + ## HITS:1 COG:SA1927 KEGG:ns NR:ns ## COG: SA1927 COG0191 # Protein_GI_number: 15927699 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 2 269 3 273 286 171 37.0 1e-42 MLADTAELARDAAQRGQGLAAFNVVLLDHAEAFIDAAQEAQLPLVLQLSQNAVAYHGGRL APIGRALIELASEATVPVSVHLDHAESTDLCRAAVDLGFTSIMYDGSVLPDDVNRATTAA MVEMAHASGVSVEAELGEVGGKNGVHDPKARTKPEDAAQFVADTGVDLLAVAVGSSHAMA TRDAVLDTELIAAIKRAVPVPLVLHGSSGVPDDGMVAAINAGMTKINVSTHLNVVFTSRI RDILLHDPGLVDPRKYVGPATGIVRDEVRRLMELYAPWCAVA >gi|292820465|gb|ACYT02000058.1| GENE 15 10979 - 12139 1257 386 aa, chain - ## HITS:1 COG:slr0329 KEGG:ns NR:ns ## COG: slr0329 COG1940 # Protein_GI_number: 16331233 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Synechocystis # 83 360 32 314 327 99 28.0 7e-21 MSATHGPDRIRELNSLAILDYLRSVDEATVSQIAQETGLSRTSVGATIADCEELGWVASL PPAPSITGRPAKRYRFQSEAGVVVGLDIGANHIDVMATNLIGASLASARADVSPDEPAPQ RLGAALALLDSILEGQGVVRERLTVISVALTGPVDAEGRSPYGTPLPGWDSVDISRELRD RYGCAVFVENDCKCALAAEAWTGQAQDLSSAAYIMAGARIGASFMIDGTVCRGAGGAAGE VGALKALKWSSTPAVFLTHSRLPADIATHRAAQWVCDQAREGDREAIKIARSFGRNLAVG ASALVLTVDPEALIVGGGISASADVWMDAFTQRLTELVLRVPDVRTSNLGSQAVVLGAVR RGLNHIEALTLGDTLRGPQVLFDEQH >gi|292820465|gb|ACYT02000058.1| GENE 16 12236 - 13921 1803 561 aa, chain - ## HITS:1 COG:no KEGG:Sked_01980 NR:ns ## KEGG: Sked_01980 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 37 480 56 494 578 394 47.0 1e-108 MRRFPRFAVALAATAGLTCAALPASATENDTVKWTALEAADAPIANPLKGFFPFAPEDGS APKAVDGALSYTMEWAYFPVNAVVTGRDTYDFTKVDALLDAIAARGDQSAIRFYLDYPTR PTGVPQYLIDAGIDTSRSYTVFDNNNISFSPDYNDPAVQEMLLHFVDALGKKYDGDPRIG YITAGLIGFWGEDHTWPMNGEKSADNPKGENWMPSDEFRASLVAAWDKAFDKTFVQYRLP TSATKEHHMGYHDDSFAYSTLDNVDWHFMSHMKNQNETDAWQSAPIGGEVYPPLQTCIFS QPLNCAGAEAERAQGRNFDMMGSIKATHATWLINEKAFTVGYQGDDMKRAEEANAAMGYT LQATKAAASITGNDATVSVEIANTGVAPFYASWPIEVSLVDGVGSTVASQIVESPLPSIT PGTTGTVTAHVTVPAARGGARAVADELTATIRVVNPLPNGAPVLFANRDMNTMLPGALTL TAVQRMDATNAPSPTPQETAAPSDPASSPAPSSAPAAASAPQATQPTTSLARTGTNALAS LVCIAAMAGAGTFLYRRAHRR >gi|292820465|gb|ACYT02000058.1| GENE 17 14075 - 15082 1172 335 aa, chain + ## HITS:1 COG:lin0218 KEGG:ns NR:ns ## COG: lin0218 COG1175 # Protein_GI_number: 16799295 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 58 332 15 291 292 160 35.0 3e-39 MTSTTLTKGGGVAPDLAGTTSGSKASARKRAGVASSRFGEKSGEGKKRVRDDRVAAAIFL IPTFVGFFVFYVYPALRGLWYSFTDFNLIGDAHYVGLDNYAKAIGDKEVWNAFAVTIAYA LYNIIGQTFLGLLLAALMQRFARSTWVRSLLLLPWLVPNVAIALIWGWLLDSNIGYVTHL LSYVGIDGVTFYNAHAAMPIVAGINIWAYTGYTALLLYAGMLQIPGELYESAALDGAGET RMFFSITLPLLRPVLVLVLVMGLIGSFQIFDTVQIGYAGHPIPAVRVIYYYIYQQGFTFL KMGYASAVAMLLVLVLAIFTAIQLRLMRAGSSDLA >gi|292820465|gb|ACYT02000058.1| GENE 18 15093 - 15971 1288 292 aa, chain + ## HITS:1 COG:MT2099 KEGG:ns NR:ns ## COG: MT2099 COG0395 # Protein_GI_number: 15841527 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 15 291 22 278 280 150 32.0 4e-36 MNRTALPQRIVAWVILGVAILCTVFPFYWMIRTAMTPQADLIAESTQLWPSHPTLINFKR ILGLVSVEEAQAAGGSGATINFAIATTNSLIYAGGIAIIQTFFAACAAYAFARLRFPGKN LLFGCVIGALMVPGIFSLLPNYVLIKQLGWLNTMQGMMLPALFMAPFSIFFLRQFFLSLP REVEEAAMIDGLGPVSRFFKITIPMSAGPVMTMTLITIIGMWKDFLWPLLTGREGAQLLT VALGIFQQQSPNRAPDWTGLMAGSTLSVIPVLILLILMGRKLVESLNFSGIK >gi|292820465|gb|ACYT02000058.1| GENE 19 16005 - 17363 2263 452 aa, chain + ## HITS:1 COG:ML1770 KEGG:ns NR:ns ## COG: ML1770 COG1653 # Protein_GI_number: 15827946 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mycobacterium leprae # 3 411 2 403 446 136 27.0 1e-31 MKTRVALGVFLSAAMALPLAACNANTAATGGGESSADSGVTINYWLWDDRQAPLYQQCAD DFHAANPNITVKITQTAWGQYWDTLTTQLAASNAPDTFVDHSTRMLQFIDSGQIMDITEA ANKAGIDDSIYQPGLADLSKYEGKRYGLPKDWDTMGLLYDTEVAAEAGYTKEDMAALTWN PTDGGTFEQFIAKTTLDANGHNGLDPEFDKNNVVRYGYHPEWSDGAIGQNGWGELAAANG FTYGDRSVNPTKFNFGDKSLVDTVAWIKGLIDKGYAPKFDKTSSLGTDAVMNNGNAASTI VGSFTTSVYLGPDAKKKFAYAPLPTGPAGRRSAMNGLHDVVWSGTKHPEESFQWIAYMAS EQCQMKVGESGVIFPAVTKATEAALKAREAQGQDNSAFTTVVDNKETFPVPVFAHGDEVN ALIQDAIQAIATGADPASTLQEANDKANALLK >gi|292820465|gb|ACYT02000058.1| GENE 20 17473 - 18969 1521 498 aa, chain + ## HITS:1 COG:TM1192 KEGG:ns NR:ns ## COG: TM1192 COG3345 # Protein_GI_number: 15643948 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Thermotoga maritima # 155 426 173 442 552 161 33.0 3e-39 MDRLTIPLPTGVACASPDATLVERGEGYALIRSSRLAVLHGCADGQFYRSGHNSWSPSGW NDLAGPPLRIPTDERRATADDPAADDTVRHHGSWMGSVVDEVDGSGVLVGALEGGHPRVR ADEDHLAAFDESRPALWLLAWGSEASIFDAYVRFLSDRARTPGRAPRVWCSWYSYYEKVS WDVLLGQLPGLAQLGFDTLQIDDGWQKGVGDWRANEKFGEDLGARASDIAALGVTPGVWV APFIARPGTPFLTEHPEAFVHAPSGELAIAGYNWGGPYYALDTTHPLAQEYLRDLARSLV DAGIGYVKADFVNAAAIDGVRYEADVTGDDAYVIGSRLLREALGDDVYLLGSGALIIPSI GIYDGIRVGCDVAPIWKNYATEDRSDAEARNAFMTSVARLWLRPLIDCDPDVVFFRHMKN LLGDREISWLQDVAAVAGFKSSSDPLEWLTEQERSEVAQWLARRETVEVVGRTRFRLDGR DVDFAPGLEEPEHCYPVS >gi|292820465|gb|ACYT02000058.1| GENE 21 18992 - 19201 175 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191714|ref|ZP_06609271.1| ## NR: gi|293191714|ref|ZP_06609271.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 69 1 69 69 112 100.0 8e-24 MWRQGWSVLAPFAVWCRLIDEAGATIYDRDSLRKWVLWASLVPASFVETVGKSTLGRRLR VTWLGLRAE >gi|292820465|gb|ACYT02000058.1| GENE 22 19275 - 20555 1533 426 aa, chain + ## HITS:1 COG:Cgl0465 KEGG:ns NR:ns ## COG: Cgl0465 COG0644 # Protein_GI_number: 19551715 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Corynebacterium glutamicum # 12 379 9 360 424 181 33.0 3e-45 MASTMPSDMSADVVVVGAGPGGSSTAYHLARAGLDVVLLEKSPFPRDKICGDGLTPAAVH ELIAMGVDTTGWMRNRGLTVIGGGHTVHMDWPDQKSLPGYGMTRARMDLDHALARRAVEA GARLYEGVTVIGAIQDGSGRVVGVQAKSGRGKSATTTSVRASITVDAGGVAARLATSLGL EKKMNRPMGVAARAYFHSPRGDEEWMESHLELWSGTPGASDLLPGYGWIFPMGDGIVNVG LGSVASRAGATNLPYREVFKTWTANLPEEWGFTPENQIGQLRSAALPMSFNRKPHYTQGL VLVGDAGGMVSPYNGEGIAPAMKAGRYAASCIAQALSRSHRAGIDRAMSEYPHMLRDEYG GYYQLGRIFVALIENPTVMRTCTNVGLPIPRLMTLVHKLLSDGYERTGGDFDDQLITMLT KVVRPA >gi|292820465|gb|ACYT02000058.1| GENE 23 20584 - 20943 192 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A [Campylobacter curvus 525.92] # 5 119 14 125 129 78 31 4e-14 MTNPYVPLLIMSAAALVLAFGGLVASAILGPTKKSKTKADNYECGIQPTSAHLTEGRFPV RYYLVAMTFIIFDIEVVFMYPWAVSFNQLGLFGLVVMMSFLVTLCVPYAYEWRRGGLDY >gi|292820465|gb|ACYT02000058.1| GENE 24 20957 - 21520 456 187 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92] # 1 170 3 163 170 180 51 1e-44 KRQVGLEESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGL EVFRASPRHADMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFNNYAVVQ GCDHIVPVDVYLPGCPPRPEALIHAVLVLREQIGKEPLGVHRREIARRAEQAALEATPTH QMKGLLA >gi|292820465|gb|ACYT02000058.1| GENE 25 21517 - 22254 1113 245 aa, chain + ## HITS:1 COG:Rv3147 KEGG:ns NR:ns ## COG: Rv3147 COG0852 # Protein_GI_number: 15610283 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 27 kD subunit # Organism: Mycobacterium tuberculosis H37Rv # 28 245 19 236 236 256 55.0 4e-68 MSDLSIPEDNTPAEVTQASSQRGFALPEPIAHREGLFGAGTDSSTSGFSGLVSDSFLPGE ASRPYGGWFDQVVDVLEELIAADGLDVADVIEKVTVDRGQLGIFIAREHIARVAKYLRDD ADLRFEMCLGTNGAHYPLDKGRELHAIYPLYSITHNRMIRLEVTCPDEDPRIPSIVSVYP GNDWQERETWDLIGIVFTGHPSLTRTAMPDDWVGHPQRKDYPLGGIPVEFKGAVTASADV RRSVN >gi|292820465|gb|ACYT02000058.1| GENE 26 22254 - 23600 2133 448 aa, chain + ## HITS:1 COG:Rv3148 KEGG:ns NR:ns ## COG: Rv3148 COG0649 # Protein_GI_number: 15610284 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Mycobacterium tuberculosis H37Rv # 22 448 15 440 440 525 60.0 1e-149 MTTAFHAPAGATDLPIEDIPEVLTQGGDWDDVLHEIEAITSERIVVNLGPVHPATHGVLR LILELDGEKVRETRVDTGYLHTGIEKNMEYRTWAQGVAYCTRMDYVAPFFQEAAYCLGVE KLLGIEEDIPERASLIRILMMELCRIASHLVAIGSTGNEMGATTIMTIGFRAREEILRIF ERITGLRMNHEYIRPGGVVQDIGEGTADYIRDRLRRARKDIGELQDILVENPIFKKRLCD VAVMPLSGLMALGTTGPGVRAAGLPLDLRKSQPYCGYENFEFDVPTRDKSDVYNRTMIRF DECYESMRIIWQVLAKLDQCEGAPTMVADPEIAWPARLAVGTDGQGNSAEHVREIMGESM ESLIHHFKLVTEGFHVPAGQVYQTVEHAKGILGVHLVSDGGTRPFRAHFRDPSYANLQAL AMMTEGGQLADVVVALAAIDPVLGGVDR >gi|292820465|gb|ACYT02000058.1| GENE 27 23597 - 24307 898 236 aa, chain + ## HITS:1 COG:MT3237 KEGG:ns NR:ns ## COG: MT3237 COG1905 # Protein_GI_number: 15842725 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 2 218 31 245 252 241 56.0 1e-63 MSYTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP RAEISAVATFYTQYKRHPTGEYLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDGK ITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFKE NERVLAGFLDGHENEGPSAGRATLLGREIAAANGWTEPVAVEVADEATDTKGEDAK >gi|292820465|gb|ACYT02000058.1| GENE 28 24304 - 25608 1412 434 aa, chain + ## HITS:1 COG:MT3238 KEGG:ns NR:ns ## COG: MT3238 COG1894 # Protein_GI_number: 15842726 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Mycobacterium tuberculosis CDC1551 # 10 410 7 422 445 535 63.0 1e-152 MSTAYVAPGPLTPILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLR GRGGAGFPSGLKWSFLPPADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSR AIGCDHAFVYLRGEVTHVYRRLLEAVREATEAGVLGDLRITAHAGAGAYICGEETALLDS LEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPKWFASMGTEKSKGHGI FSVSGHVNNPGQFEAPFGITMRELIEMAGGIRDGHKLKFWTPGGSSTPIFTEDELDTLLD YESVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLR LERGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF PYEVSANYARGGGR >gi|292820465|gb|ACYT02000058.1| GENE 29 25605 - 27207 2154 534 aa, chain + ## HITS:1 COG:Rv3151 KEGG:ns NR:ns ## COG: Rv3151 COG1034 # Protein_GI_number: 15610287 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Mycobacterium tuberculosis H37Rv # 5 534 14 480 806 422 47.0 1e-117 MSDAPNMIDVTIDDVQVSVPQGTLVIRAAEQAGIRIPRFCDHPLLAPVAACRQCLVEVGM PDRNTGELRFMPKPQPSCAQTVTPGMVVKTQHTSEVIDRAQRGVMEFLLINHPLDCPVCD KGGECPLQNQALTEGRGKSRFTDAKRTFKKPLRLTSQILLDRERCILCQRCVRFGKEISG DVFMDLQGRGGGTAPTEHHYFMGEQVGGFDSTTLDFFDPKAKEASTSSLSSPYGTDAIVG SINEGEVSVAERDVSGRAFASYFSGNIIQICPVGALTAASYRFRARPFDLVSTASVTEHD ASGSAIRQDVRRGEVVRRMSGNDPEVNEEWITDKDRFAFEWDKVDRLTTPLVREDGKLVP TSWSDALDRVRAGLEQAGSSVGFLPGGHLTFEDAWAWSKFARTVVGSDSIDFRSRRSSEE ERSFLASYVAGSGLETTYADLESAGQVLLVALEPEDECGAMFLRLRKATRKSGLKVATVA PFTSAGSRKMKARLLHAAPGSEPGVVDAIAAGGAYADVAEALSGGIILVGERAA Prediction of potential genes in microbial genomes Time: Tue May 17 06:56:36 2011 Seq name: gi|292820448|gb|ACYT02000059.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.34, whole genome shotgun sequence Length of sequence - 15902 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 5, operones - 3 average op.length - 4.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 18/0.000 + CDS 3 - 944 1212 ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) 2 1 Op 2 31/0.000 + CDS 941 - 2269 1899 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 3 1 Op 3 28/0.000 + CDS 2262 - 2912 843 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 4 1 Op 4 30/0.000 + CDS 2912 - 3889 1374 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 5 1 Op 5 26/0.000 + CDS 3886 - 4185 474 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 6 1 Op 6 30/0.000 + CDS 4201 - 6177 2994 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 7 1 Op 7 22/0.000 + CDS 6191 - 7750 2401 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 8 1 Op 8 . + CDS 7747 - 9315 2249 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) 9 1 Op 9 . + CDS 9312 - 10325 1208 ## COG0142 Geranylgeranyl pyrophosphate synthase + Prom 10404 - 10463 2.3 10 2 Op 1 . + CDS 10508 - 12019 2025 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Term 12055 - 12110 10.3 11 2 Op 2 . + CDS 12200 - 13078 853 ## COG0501 Zn-dependent protease with chaperone function + Term 13089 - 13148 19.6 - Term 12931 - 12976 3.1 12 3 Tu 1 . - CDS 13144 - 13647 777 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 13771 - 13830 80.3 + TRNA 13746 - 13830 68.3 # Tyr GTA 0 0 + TRNA 13922 - 13997 79.0 # Thr GGT 0 0 + TRNA 14022 - 14098 96.5 # Met CAT 0 0 + Prom 14048 - 14107 52.5 13 4 Op 1 . + CDS 14153 - 14323 271 ## PROTEIN SUPPORTED gi|227493374|ref|ZP_03923690.1| ribosomal protein L33 + Term 14345 - 14383 2.5 14 4 Op 2 . + CDS 14407 - 15423 987 ## Arch_0481 hypothetical protein + Term 15508 - 15563 16.1 15 5 Tu 1 . - CDS 15495 - 15872 463 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|292820448|gb|ACYT02000059.1| GENE 1 3 - 944 1212 313 aa, chain + ## HITS:1 COG:MT3239 KEGG:ns NR:ns ## COG: MT3239 COG1034 # Protein_GI_number: 15842727 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Mycobacterium tuberculosis CDC1551 # 1 296 472 777 791 213 44.0 4e-55 SSVVALAERTGARLAWVPRRAGDRAAIEAGLLPGLLPFGRGLDEAGAQSLGWGELPGRGL DAEQMIEAAASGELQALVVGGVDVRDFDEPAAVREALEEVPFLVSLEVRASEITDRADVV LPVAPAVEKNGTYINWEGRLRPFGQARSATSLTDRDVLVRLTEEFDLDLGITALADLYEE VNPLMEWDGAPQEFTSVSAQAPAAAGKGQVVLASHKPMIDAGRLQDGAPWLAGSARRPVL LASAATLAAAGIAPGADATLETERGTITLPAAIADLPDSVAWVPECSTGSVIHENLGGAG TVATLRATQEVAR >gi|292820448|gb|ACYT02000059.1| GENE 2 941 - 2269 1899 442 aa, chain + ## HITS:1 COG:MT3240 KEGG:ns NR:ns ## COG: MT3240 COG1005 # Protein_GI_number: 15842728 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Mycobacterium tuberculosis CDC1551 # 16 408 4 399 410 385 54.0 1e-107 MTLAPFAVPEYTAADFSQETWWLSLIKAVFIIVFLIANVLLALWVERRGLGRMQTRPGPN VAGPLGLFQAFADAGKLLFKEDMWTRRAERFLYFLAPAIAAFAAFSVYAVIPMGPNVKIF GHSTPLQLADMPVASLYILAIASLGLYGIVLGGWSTRSTLPLYGAVRSSAQVISYELAMG LSLVSVFLMSGSMSTSQIVAAQGQFWWAFTLFPAFVIYCISAVGEVNRLPFDLPEAEGEI VAGHMTEYSSMKFGWYYLSEYVNMLNVSAVATTMFFGGWHAPWPLSHVEFLNSGWWGMLW FFLKIWFFMFLMIWTRATLLRFRYDQFMNLGWKRLMPIALGWLVLVALVRGITQFVQLPN HVLFGGVGVLFLIALAIIWLTDKSEPEEIPASEREYTGFEDGFPVPPLPGQTPVASPRGL ATIEGELAPAAAIDSPKESTDE >gi|292820448|gb|ACYT02000059.1| GENE 3 2262 - 2912 843 216 aa, chain + ## HITS:1 COG:MT3241 KEGG:ns NR:ns ## COG: MT3241 COG1143 # Protein_GI_number: 15842729 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Mycobacterium tuberculosis CDC1551 # 16 187 24 195 211 229 64.0 3e-60 MSEKTTDEEMLFEHDPKGAFAQFVAPMAGYGVTMASFFRPTVTEQYPREPARVMPRFHGR HQLNRYDDGLEKCVGCELCAWACPADAIFVEAASNTPEEQYSAGERYGRVYQINYLRCIF CGMCIEACPTRALTMTNDFEIAKYTREDDIYEKEDLLVPLSDGMLAAPHPMVEGKNDIDY YRGEVTGPTAAQVDWVASRRPDDPSLKTVRVAEEAH >gi|292820448|gb|ACYT02000059.1| GENE 4 2912 - 3889 1374 325 aa, chain + ## HITS:1 COG:MT3242 KEGG:ns NR:ns ## COG: MT3242 COG0839 # Protein_GI_number: 15842730 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Mycobacterium tuberculosis CDC1551 # 12 245 14 241 262 140 41.0 5e-33 MNLSNGWPMMGSTGEIILFACTAILMVACALGVLFFKKAAHSVICMVGVMLGLAVLYIAN SAPFLGVAQIVVYTGAIMMLFLFVIMLIGIGTSDDYARQSRGAIVAAVLGGLGLIVIVTT AILKAVPAPHKPVEVDPYSNQPITDLAITLFQEHWLSMELAGGLLITAAVGAMLLTHSDR LTPKADQFETARNKMRAFAEKGARIGQLPAPGVYAQSNAADVPAVSGETLGPVEESVPRV LRVRGLTRTIGEVTPEVSEQLALARTETAATDAIDESPYTIGRTPDVPRSSAFGMPGADA PTGLAQPRARKARTTTPIEKKEESK >gi|292820448|gb|ACYT02000059.1| GENE 5 3886 - 4185 474 99 aa, chain + ## HITS:1 COG:MT3243 KEGG:ns NR:ns ## COG: MT3243 COG0713 # Protein_GI_number: 15842731 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Mycobacterium tuberculosis CDC1551 # 1 98 1 98 99 86 57.0 9e-18 MSLAWYLILAGVLFAIGATTVLVRRSAVIALMGVEMMLNAANLVLVTFARINSNVDGEIM AFFVMVVAAAEVVVGLSIIVSIYRSRSTTSMDDLNLLKN >gi|292820448|gb|ACYT02000059.1| GENE 6 4201 - 6177 2994 658 aa, chain + ## HITS:1 COG:MT3244 KEGG:ns NR:ns ## COG: MT3244 COG1009 # Protein_GI_number: 15842732 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Mycobacterium tuberculosis CDC1551 # 24 639 9 613 633 539 52.0 1e-153 MTTFISPQTLTVYDTVAPTGAAAYAWLLILIPLASAGLLLLLGRASDKWGHLLATLASWS TFVVGALIAAQMWNAPVEARRFGQTLFTWIPAGDFTVDFGLLVDPLSITFVILVTFVGSL IHVYAIAYMEHDAARRRFFAYLNFFIAAMLTLVLADSYAGLFAGWEGVGLASYLLIGFWN HVPAYAVAAKKAFVMNRVGDMGMLIAMMAMVASFHSVSFSEVSAMVGSIPTASATVIGIF LLVAACGKSAQFPLQAWLGDAMAGPTPVSALIHAATMVTAGVYLIVRSGDVFMAAPIAAT AVAIIGAITLLFGAIVGCAKDDMKKVLAASTMSQIGYMMLGAGLGPIGWAFSIFHLFTHG FFKALMFLGAGSVMHGMGDQVNMRRFGALRGAMKVTWLTFMMGWLAILGVPPFSGYWSKD KIIEAAFSADSFGGNTALWAGWVYGPIAMIGAGITAFYMSRLFFMTFHGKARWTTEAEGA PVHPHESGPLMTIPMIILAIGAVALGGALSVGNIFTEWLVPSIGYVTHGDPVLNEYVIQG ATLALVILGAAVAWMKYGRDEVPTSVPAGNALTEAARRDLYQDTVNETLFMMPAKGLVTV ATVGDASAIDGALNGLGAGSQLLGRIVGITQNGLVRTYAAYILGGVILALAIVLGFRL >gi|292820448|gb|ACYT02000059.1| GENE 7 6191 - 7750 2401 519 aa, chain + ## HITS:1 COG:MT3245 KEGG:ns NR:ns ## COG: MT3245 COG1008 # Protein_GI_number: 15842733 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Mycobacterium tuberculosis CDC1551 # 9 509 4 529 554 339 41.0 7e-93 MESAMIAANFPWLSVLVAVPAAGAALLGFVPPLRRAAGRVVVLVVSLVELALGVYVAASV FDWSAPASYQVYESHLWIPQIGITWSLGVTALGLVMILLAIGLVPLVLIAGWDEDDAADR GAYPALVLALQAFMVVIFAAYDLTVFYFAFEAMLVPLYLMIGRYGVGDEAARHKAAMKFL LYSLFGGLVMLGGILYLWAKGSQALQDVSTFFRIDTLAHILPSAPLAIQMVVFVTFMVAF AIKAPMVPVHTWLPDTAAVARPGTSVLLVGVLDKIGTFGMIALCLQLTPGAAVSAKWVMC VLAVISILWGGLAANGQNDIMRLVSYTSVSHFGFMVLGIFIGSQIALVGAMFYMVAHGVS IAAMFLLSGWLSRRGGTQDMREYVGMQRVTPVLAGLWLVSGLASIALPGLSGFVPEYLVL MGTWSLSGPLALFAVLGVVIAALYVLMPYQRVFTGAPGKGKEELADLATRERGVMVPLVA AMLILGIWSAPLVSALTPVASDLDLTNSQVPAAAEGSAQ >gi|292820448|gb|ACYT02000059.1| GENE 8 7747 - 9315 2249 522 aa, chain + ## HITS:1 COG:Rv3158 KEGG:ns NR:ns ## COG: Rv3158 COG1007 # Protein_GI_number: 15610294 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Mycobacterium tuberculosis H37Rv # 11 521 5 530 531 363 44.0 1e-100 MNVLPMANFQAPEVHWVSLAPILIVLGGAVLGVLVEAFAPAKARRPLVIALSILATAGAC VMLALRWVPVLETPVTLGEYMEDPLTIAAQSALAIIGFFAVLVMADRTSVGDGAFAGQPS DRPDSAAEELSERKGYQRSEIFPLTLFSLGGMMIFPAADNFVTLFVALEVMSLPLYIMAA TARRRRQLSYESALKYFVLGAFSSGFLLMGSAFLFGFSNSLRISALAEAISTHTNMEWMV LVGVFCVMVGLLFKVGAAPFHAWTPDVYTGAPTPVTGFMAAAVKIAAFAAMIRFYTVAAA YLHWDFLYIFAAIAVLTILVGTFAGLVQDDVKRMLAYSSISHVGFILMGILAIQKGGTGH VLFYTLGYGLATVGAFGVVTLVRGRDADGNVLGEATSLRKWAGIGRTNPWIAGAMLVFLL SFAGIPLTGGFIGKFVVFSDAIKGGIGWLAIVGLVASAITAFYYFRLVRLMFFTEPSEES VVVKSEGLSALVIAVCAIGTLALGVFPGPVLSLLEKIVILIP >gi|292820448|gb|ACYT02000059.1| GENE 9 9312 - 10325 1208 337 aa, chain + ## HITS:1 COG:Cgl0466 KEGG:ns NR:ns ## COG: Cgl0466 COG0142 # Protein_GI_number: 19551716 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Corynebacterium glutamicum # 11 336 32 349 350 233 44.0 4e-61 MSAQTPDLHVPDLESRITPGLEVVERRLLDAVSSSRDLTDELTRHLAVAGGKRMRPLLTL VCAQLGEPERGLDEQVITAATAVELTHLASLYHDDVMDSAPTRRGVPSAQHLWGNNRAIL AGDILFARASLLVASLGPEMVAHHARTFERLCEGQLNETFGPTDGADRVDFYLQVLADKT GSLVSTAASFGALLSGAGQLMADVVSDFGEKVGVAFQIADDVLDLASSGEQSGKTPGTDL REGVDTLPVLLLRRREAAGTIDEAGARILRELTGDLSSDEALASVVEQLRSHDVLEETRE LARTWANDAVAALAPLPKGEAKTALEAFANLMVDRLV >gi|292820448|gb|ACYT02000059.1| GENE 10 10508 - 12019 2025 503 aa, chain + ## HITS:1 COG:Cgl2757 KEGG:ns NR:ns ## COG: Cgl2757 COG0493 # Protein_GI_number: 19554007 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Corynebacterium glutamicum # 3 468 4 453 457 472 54.0 1e-133 MAPLNVAVIGAGPAGIYASDILSKSGLEVNIDLFERLPAPYGLVRYGVAPDHPRIKQIIV ALYKILQRGDIRLLGNVEVGRDVTIDDLRDHYDAIIIATGADRDHPLDIPGVDLPESYGA ADFVSWYDGNPDYPRTWPLKAREVAVLGVGNVALDVARVLAKHAEDMLKTEVPANVAEAL AENPITDVHVFGRRGPAQVKFTPLELRELGKVPDVDVIVSEEDFDFDEGSEEALRASNQQ RQVVKTLTSYAMADPEEHTASRRIHIHLFQAPVEIVADENGHVKALRTERTALNGDGSVS GTGVITTWPVQAVYRAVGYYSSPIPGLPFDERAGVVPNVEGRVIEGDTTKDESAPVIPGV YATGWIKRGPVGLIGSTKSDAQQTISHLVEDASQGRLHANTAEVGHEAMVALLESRGVEF TTWEGWELLDAYEQALGEDYGELPGGRGTRERIKVVSRRAMTDISRGAQVDPKATDLIGE MGEMGVPSAPERFDDYTGPGRRN >gi|292820448|gb|ACYT02000059.1| GENE 11 12200 - 13078 853 292 aa, chain + ## HITS:1 COG:ML2278 KEGG:ns NR:ns ## COG: ML2278 COG0501 # Protein_GI_number: 15828221 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Mycobacterium leprae # 8 289 8 283 287 255 51.0 6e-68 MVHRNYHNGLKTTLLLGGMWALLLAIGAMIAAGTGRAVWLFVFAGIGLVQTAYSYWNSAT IALRSMGAYRVSEVQYPQLYAIVRELAARAQQPMPSIWVAPSLTPNAFATGRNPNNAAVC CTEGILAILNERELRGVLGHELMHVYNRDILTTSVAAAMGGVIASVAQFFMFFGGRNGRD GSGGMGFVGMLVLSLLAPFASMLIQFSLSRTREFDADEDGAMLTQDPLALASALRKLEMA TDRRPMEDTPRTRNVAAMMIANPFRGQSVMRLFSTHPPMEQRIARLEKIAGY >gi|292820448|gb|ACYT02000059.1| GENE 12 13144 - 13647 777 167 aa, chain - ## HITS:1 COG:MT0592 KEGG:ns NR:ns ## COG: MT0592 COG1666 # Protein_GI_number: 15839964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 167 1 163 163 169 61.0 3e-42 MADSSFDVVSKLDRQEVDNAVNQTAKEIANRYDFRGVDAAITLSGDTIAMEANSASRVMA ILDVLQSKLIRRGLSLKVLDYKDREPKASGKLFKLTCPLKEGIPQDTAKKISKLIREEGP KGVKAQIQGDELRVSSKSRDDLQAVIALLKGPKGEELDVALQFVNYR >gi|292820448|gb|ACYT02000059.1| GENE 13 14153 - 14323 271 56 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227493374|ref|ZP_03923690.1| ribosomal protein L33 [Mobiluncus curtisii ATCC 43063] # 1 56 1 56 56 108 85 2e-23 MASKSQDVRPKITLACSECKERNYITKKNRRNTPDRLELAKYCPRCHKSTAHRETR >gi|292820448|gb|ACYT02000059.1| GENE 14 14407 - 15423 987 338 aa, chain + ## HITS:1 COG:no KEGG:Arch_0481 NR:ns ## KEGG: Arch_0481 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 10 333 11 322 331 208 42.0 2e-52 MTDSVDFCCIVAPKGAGEARIPGLVTLADERTVLFFDERPAPASGTGSDFNGLTMASDLP NPNRILWMEREGSGRWSESHPLPAGGPPVSSDACVGVDGDGLMHLAFASTDGRVGYMDSR AGGERLRAWWAWGSGPEDFAYVDMTDELYELTGADALFATSGGTVALDGAVALPYVVRVG DETHVRVAYARAGRLVGAADPLVGDGGVLLDETTLSVWDGRLVANCRLQGFEGRGSGARF LAWGDGRTWAGGRLWELDDPGCNARMIGALFVHPGRMDTRACGEIVRLTPPWEGEVYAEV VATFGEGAFGYSDATVDGDEAVVVFERDRGLWEATVRR >gi|292820448|gb|ACYT02000059.1| GENE 15 15495 - 15872 463 125 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 121 98 215 216 110 48.0 6e-25 MCPNLAQQQEMLQILMDAKPAGAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCI DNGATEQVFGHLKDEFFRGQDWQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQA LQEAA Prediction of potential genes in microbial genomes Time: Tue May 17 06:56:43 2011 Seq name: gi|292820446|gb|ACYT02000060.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.4, whole genome shotgun sequence Length of sequence - 1778 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1778 2365 ## COG0247 Fe-S oxidoreductase Predicted protein(s) >gi|292820446|gb|ACYT02000060.1| GENE 1 2 - 1778 2365 592 aa, chain + ## HITS:1 COG:MT0352 KEGG:ns NR:ns ## COG: MT0352 COG0247 # Protein_GI_number: 15839724 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Mycobacterium tuberculosis CDC1551 # 26 592 137 654 882 444 45.0 1e-124 DAAAAAADPEGTPPSSLAKPHPRDSSPRGLASRFLGSTRWQALFVEWVILIVCACVVALR GLEYALFSATPGLEAHATVLHFPLTGWLGALFAAAVSSSAASLANAIVLVSALKVLTSMT WLTVVGIQTGMGVAWHRFVAILNLYTRRNADGTKSLGPADHMLIDGKPVTSEDDFDDLPE DTVLGVGTIDDFSWKARLDLYSCTECGRCQELCPAWNTQKPLSPKLLIMGLRDHMESASN VQIVEQEEGHQKLEDGEVLLDKGVPASPHSFDLVSALSLSGATGPEGVSAVTAPLVPEVV SEEVLWDCTNCGACVEQCPVDIEHIDHILDLRRHQVLMEGAFPRELGRAFRGMESKANPY NQAARKRMDWAKKLDFDIPVVGEDIEDASEVDYLFWVGCAGAYDDTAKKTSAAVAELLHT AGVSFAVLGSGESCTGDPARRAGNEALFQMLAAQAIDTLKEAKPQKIVVSCAHCFNTIAG EYPELGGSFDVVHHTQLLNRLVRDGLLTPVAPTASPASAGTDSTDEAGAQSADSAPSVGA PLKVTYHDACFLGRHNRVYEPPRELVGSLPNVELVEMPRNRDRAMCCGAGGA Prediction of potential genes in microbial genomes Time: Tue May 17 06:56:50 2011 Seq name: gi|292820418|gb|ACYT02000061.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.5, whole genome shotgun sequence Length of sequence - 20610 bp Number of predicted genes - 25, with homology - 24 Number of transcription units - 15, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 268 247 ## gi|154508045|ref|ZP_02043687.1| hypothetical protein ACTODO_00535 - Term 271 - 325 19.6 2 2 Op 1 . - CDS 337 - 549 462 ## RMDY18_05750 molybdopterin-binding protein 3 2 Op 2 . - CDS 626 - 2191 1913 ## HMPREF0573_10558 hypothetical protein 4 2 Op 3 . - CDS 2240 - 2821 704 ## COG0717 Deoxycytidine deaminase 5 2 Op 4 . - CDS 2868 - 3428 913 ## BDP_1804 TM2 domain-containing protein - Term 3558 - 3599 15.2 6 3 Op 1 . - CDS 3644 - 3958 590 ## gi|293191841|ref|ZP_06609302.1| TM2 domain protein 7 3 Op 2 . - CDS 3967 - 4113 84 ## + Prom 4007 - 4066 4.1 8 4 Tu 1 . + CDS 4125 - 5048 864 ## COG1194 A/G-specific DNA glycosylase - Term 4913 - 4945 -0.9 9 5 Op 1 36/0.000 - CDS 5126 - 6457 180 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 10 5 Op 2 . - CDS 6454 - 7215 342 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 11 5 Op 3 . - CDS 7212 - 8288 1434 ## Arch_0443 hypothetical protein - Prom 8313 - 8372 2.8 12 6 Tu 1 . + CDS 8452 - 9006 597 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 9027 - 9065 5.2 - Term 9009 - 9058 17.2 13 7 Op 1 . - CDS 9068 - 9445 675 ## COG0526 Thiol-disulfide isomerase and thioredoxins 14 7 Op 2 . - CDS 9540 - 10178 701 ## Xcel_3195 transcriptional regulator, TetR family 15 8 Tu 1 . - CDS 10322 - 10741 433 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + TRNA 10994 - 11067 66.6 # Gly CCC 0 0 - Term 11202 - 11253 0.1 16 9 Tu 1 . - CDS 11309 - 11587 202 ## gi|293191851|ref|ZP_06609312.1| transposase - Prom 11724 - 11783 1.7 17 10 Tu 1 . - CDS 12112 - 12378 107 ## gi|293191852|ref|ZP_06609313.1| transposase OrfA, IS3 family 18 11 Tu 1 . - CDS 12844 - 13683 673 ## COG4695 Phage-related protein 19 12 Tu 1 . + CDS 13728 - 14108 384 ## gi|293191855|ref|ZP_06609316.1| hypothetical protein HMPREF0970_01658 + Term 14197 - 14257 3.1 - Term 14522 - 14562 14.1 20 13 Op 1 13/0.000 - CDS 14584 - 15630 1541 ## COG0136 Aspartate-semialdehyde dehydrogenase 21 13 Op 2 . - CDS 15775 - 17091 1751 ## COG0527 Aspartokinases 22 14 Op 1 40/0.000 - CDS 17314 - 18624 1244 ## COG0642 Signal transduction histidine kinase 23 14 Op 2 . - CDS 18873 - 19580 710 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 24 15 Op 1 . - CDS 19793 - 20386 789 ## COG0353 Recombinational DNA repair protein (RecF pathway) 25 15 Op 2 . - CDS 20388 - 20609 282 ## gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 Predicted protein(s) >gi|292820418|gb|ACYT02000061.1| GENE 1 2 - 268 247 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508045|ref|ZP_02043687.1| ## NR: gi|154508045|ref|ZP_02043687.1| hypothetical protein ACTODO_00535 [Actinomyces odontolyticus ATCC 17982] # 1 88 739 826 826 164 97.0 2e-39 WFEETRGTRIADARIVEAASTGADVVATACPFCSQMLGSASGTSAGFVSSDADQGGANND AATASSGGKLPEVRDVAVMLLESVKRGQ >gi|292820418|gb|ACYT02000061.1| GENE 2 337 - 549 462 70 aa, chain - ## HITS:1 COG:no KEGG:RMDY18_05750 NR:ns ## KEGG: RMDY18_05750 # Name: not_defined # Def: molybdopterin-binding protein # Organism: R.mucilaginosa # Pathway: not_defined # 1 69 40 108 109 83 68.0 3e-15 MKLSARNQLPGTVVEVSQGAVNGIVKIEVAPGLVISSSITNAAIEELGLTVGSKAVAVIK ASNVIVGVED >gi|292820418|gb|ACYT02000061.1| GENE 3 626 - 2191 1913 521 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10558 NR:ns ## KEGG: HMPREF0573_10558 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 185 512 11 345 345 127 33.0 1e-27 MRAERAERAAREASYPPAPDSADLPEPPAPEPADLQAPPPPEPPEPTPVMGVPQVQVAPQ RSAGHEVEAGIPPVAPSQTRTGVIQGVALPGMTPREQVTNRDEAPQAAPVRRSLKERMAS APHSFADPTPMSVTDNPLTQTNVGLTTMTSTDAAFQIAADGEVTSAEATIPIAAAIEVSE PAGVLDLDVAREHHLFLVSDAVDPAELEALAISMWDEAGWIAPGRLRLSSDAELEGPWTL DQPTRAALGTPASLSNAWVLHCPQAPARQHNNGVMGEWDKAFPDGLPTGLEYRVLEALRR MARRLAGGLRIAGSGYVMVPDADSAVNLTVYSPRWINPEDLLSAMRERAGFEQMKDARDI TPEAPKPVPLTPAQIAQIEKLKAELGPVRKDIASKIAKAREEHEAQRDKPQVVDGYALMS PIGHRSDMMIEVHAVPTPPRVLRWEPWTAGAIIEYQVRWLPTSAPTPGVGAISRTARLER LRSTQDVEKAAGMIATLVGGNVIDEDGFLVGLEEISPEDGE >gi|292820418|gb|ACYT02000061.1| GENE 4 2240 - 2821 704 193 aa, chain - ## HITS:1 COG:ML2507 KEGG:ns NR:ns ## COG: ML2507 COG0717 # Protein_GI_number: 15828356 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Mycobacterium leprae # 1 188 1 188 190 259 68.0 2e-69 MLLSDRDIKASLDSGRIQLDPLDRDLVQPASIDVRLDRLFRLFDNHRYPVIDPAADQSDL THQVDVGPDQPFVLHPGEFVLGATYELVTLGNDIAARLEGKSSLGRLGLLTHSTAGFIDP GFSGHVTLELSNTATMPILLYPGMKIGQLCFFDLSSPAEHPYGSSGLGSHYQGQRGPTPS RTHERFTRTRIER >gi|292820418|gb|ACYT02000061.1| GENE 5 2868 - 3428 913 186 aa, chain - ## HITS:1 COG:no KEGG:BDP_1804 NR:ns ## KEGG: BDP_1804 # Name: not_defined # Def: TM2 domain-containing protein # Organism: B.dentium # Pathway: not_defined # 7 170 47 226 245 75 37.0 9e-13 MTTPDPQATPFQPEDAAEAPAFPQASTPGYDEATATPGATTYGTAYDAPAADPYAQQGYG VPGPDANAQGAYGAEAYGQPGYEQAAYAAGQQAYGQPAYGQPAYGQPFAAGAPKQWIVAL LLAFFLGALGIHNFYLGYTTKGIIQLILTITMIGAPIAAIWAFIEFIMIIARSGSYAYDA QGQPLQ >gi|292820418|gb|ACYT02000061.1| GENE 6 3644 - 3958 590 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191841|ref|ZP_06609302.1| ## NR: gi|293191841|ref|ZP_06609302.1| TM2 domain protein [Actinomyces odontolyticus F0309] # 1 104 1 104 104 177 100.0 2e-43 MSAPQQPVFNQPAQGKSRIVAGLLNLFLGALGAGEFFLGYTQYGIYKLVISIAFIVLGFL DLGFISTLIGLLNYVWWVALLAMAVLTFMGKWIYEKDASGVPTV >gi|292820418|gb|ACYT02000061.1| GENE 7 3967 - 4113 84 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEQNFIVMNERNYAVICSIITDGYCTKSEGSASLTMLSKMPLWAPINA >gi|292820418|gb|ACYT02000061.1| GENE 8 4125 - 5048 864 307 aa, chain + ## HITS:1 COG:Cgl2617 KEGG:ns NR:ns ## COG: Cgl2617 COG1194 # Protein_GI_number: 19553867 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Corynebacterium glutamicum # 12 298 5 285 293 233 45.0 5e-61 MFINPSAEATRALHCDLPHWFATHKRDLPMRAADVSDWGTLVFEIMSQQTPIARVQPIWL EWMERWPTPADVAAASSADIIVAWANLGYPSRALRLKACAAAIVEKHGGEVPLSLKELTL LPGVGTYTASALLAFRHGIRVPVLDTNVRRVLVRFLDGREFPPHTTPSKAETMRADAMLP EDGHKAAEVSLSLMEFGALVCSQLSPSCDECTIHDNCAWAAAGFPKDEKRPTPQPYAGTD RQARGRIMKALRTAHFEGTDGLTKRKVLDAAHIDGGDRYQPTRVYRALLKEGMIVYNEDT KRVTLPR >gi|292820418|gb|ACYT02000061.1| GENE 9 5126 - 6457 180 443 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 319 443 293 412 413 73 31 8e-13 MNAVSQILGALIEAWGEVKVQKARVVLSLVGVVAAVAAMTIVIALGDLLLQSSRELAELY EGRSVTLRLTPESSSASLEGPSANGSYQDASDPAAATGAQTAKRPDEKDTLGEAMGTLAE RADIHYWSRFSSGGGDIVETRQARSSGQFRGYPLTKIGDMVDGVAFQGVDPSYAVIYRTR MLAGRWVESSDADQRLIPVVISQTLWDQLGRAPIDQVPIVLHTSDGIAMRVVGVTKSKSS FDMPTVFAHYDAARVSFPQMNSPAMIAWVGTENADQARETLPRALASILGEGWKVSISGG EHEDIGEEQLGTISNVIMVIGGIIVFLGALGLLNVAIVTVRQRVREIGIRRAVGASAARV FFAVFMESVVATFVAGVIGVGIAVVVVRFLPLEALGITLSDTPAFPAGAAIAGVAISTSI GALCGIIPALAAVRIKPIDAIRY >gi|292820418|gb|ACYT02000061.1| GENE 10 6454 - 7215 342 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 23 229 16 223 245 136 35 1e-31 MSLVCLRDVIRTVTLPDGDDLHILRGVNLDVAQGEHVSIVGRSGTGKSTMLNIIGLLDAP TSGTYELDGVDTTRLGEGRRARMRGEDFGFVFQQFNIFSARTAAENVEVPLLYAPGPQLL RRRSIAVDMLERVGLGERADSYPGEMSGGEQQRIAIARALVRRPRVILADEPTGALDPDT GGVVMALLEEVARESNAALIVITHDMAVAVRAQRAYELYDGTLHEVEDPSALTQRAEAGH SGDEAVAGQEGEQ >gi|292820418|gb|ACYT02000061.1| GENE 11 7212 - 8288 1434 358 aa, chain - ## HITS:1 COG:no KEGG:Arch_0443 NR:ns ## KEGG: Arch_0443 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 2 333 3 329 340 196 36.0 1e-48 MAHKTRTAQVLDIVKVLAWVVIAVALVKFAFFPAVQEDEGSDGMDPGGNFGQMTIEVGRA DITNTVSVTGTIQADEPVVARATLDGNVVRTFVNDGDKIAKGDAIVQIRKDFPGETRQVT DEEGNVSVETAEPTYKFETVVSPGDGTVSTGVLVGQQFAIGDTVATVAPATFSAVASLSA DQMYRLQDAPSTATVTIKNGPAPFECTGVKLVSPTGKAQDPKSNAGSDNGASSSTDLKAR CAIPSDQTVFAGLQVTLEMTAGSATGVLAVPISAVEGRYQSGTVYLPTSDPSKPEKRAVT LGITDGKMVEVKEGLTEGEEILEFTPTSNKDNQDGQTGPYGGMDSGMAGGSGDSAGTQ >gi|292820418|gb|ACYT02000061.1| GENE 12 8452 - 9006 597 184 aa, chain + ## HITS:1 COG:CC2073 KEGG:ns NR:ns ## COG: CC2073 COG0454 # Protein_GI_number: 16126312 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Caulobacter vibrioides # 2 177 12 177 178 176 53.0 2e-44 MIRRATPADAEALSTLSRTCFTQTFGHLYDPGDLEAFLDEAYSPTVLRAELEDPHRATWL LFDDPSDEAPASSAPQAPIGYVTACPAHLPHPEVAPGDGEIQRLYILQGHQGGGRGTALL TTALEWLERDGPRTLWIGVWSENYGAQRFYARHGFEIVGDYSFMVGDHADYELITRRPAH LPSE >gi|292820418|gb|ACYT02000061.1| GENE 13 9068 - 9445 675 125 aa, chain - ## HITS:1 COG:Cgl2917 KEGG:ns NR:ns ## COG: Cgl2917 COG0526 # Protein_GI_number: 19554167 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Corynebacterium glutamicum # 1 124 1 124 124 147 57.0 4e-36 MATVTLTQENFEQTVSAGGIVLVDFWATWCGPCRQFGPIFEEASEKYPDIVFGKVDTDDQ QQMAMAAQITSIPTLMVFRDGIVVFRQSGALPLSALEDLISQVQNLDMDEVRKQIAEIEA EESAE >gi|292820418|gb|ACYT02000061.1| GENE 14 9540 - 10178 701 212 aa, chain - ## HITS:1 COG:no KEGG:Xcel_3195 NR:ns ## KEGG: Xcel_3195 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: X.cellulosilytica # Pathway: not_defined # 1 197 1 197 200 157 44.0 3e-37 MPKIIGESLASHRELTRTRLFEALGSLMAEQAFESITMSQIAERAGVGRTAVYNHFADKE VLLLAYMRQVTEEFARVLTERLDSEPDPLMRLRLYIRAHLQMISRYHVKAGTGLRRQMSG QGASHLHDHAGIVGELLIGILDEAMERGLIVEQNTLGAVHLIHATLQGQRLPQDPAHRES ALLLVETFILRGLGASEENVHQVTASSLVLGE >gi|292820418|gb|ACYT02000061.1| GENE 15 10322 - 10741 433 139 aa, chain - ## HITS:1 COG:Cgl1127 KEGG:ns NR:ns ## COG: Cgl1127 COG0494 # Protein_GI_number: 19552377 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 20 138 18 131 131 62 34.0 2e-10 MPRPVVAAAIVDSLSDPTMLLACSRAYPQELRGQFELPGGKIEEGEDPTAALTREIAEEL GARLTIGERVCPEGGQWWPILGGRIMGVWLAEVAAGSPAPRASASHLEARWVPLADLAAL PWIVADLPIVEAVVARCAR >gi|292820418|gb|ACYT02000061.1| GENE 16 11309 - 11587 202 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191851|ref|ZP_06609312.1| ## NR: gi|293191851|ref|ZP_06609312.1| transposase [Actinomyces odontolyticus F0309] # 1 92 151 242 242 187 100.0 1e-46 MRNWGGLFSVVELVAQGYCTTCAGDALLSCQCTAALSGALVLYLVHRFAVVKLVTPLRPC VSAGLKPVTPLRGENAGFPAVEGLQRCWRFHW >gi|292820418|gb|ACYT02000061.1| GENE 17 12112 - 12378 107 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191852|ref|ZP_06609313.1| ## NR: gi|293191852|ref|ZP_06609313.1| transposase OrfA, IS3 family [Actinomyces odontolyticus F0309] # 27 88 1 62 62 85 98.0 9e-16 MLRLSSWIRGLRSRLWLGIEGWVESVVGRWVTLERVRRQAVREGRPDPREMEAEITAVRR RVRELEKENEFVGKPAPSSRRITTTPAV >gi|292820418|gb|ACYT02000061.1| GENE 18 12844 - 13683 673 279 aa, chain - ## HITS:1 COG:SPy0555 KEGG:ns NR:ns ## COG: SPy0555 COG4695 # Protein_GI_number: 15674651 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 1 126 1 126 150 150 55.0 4e-36 MGLNTWIRNNATHKATDQTLGSSYSFLFGPASSGRAVTERSAMQMTAVYSCVWILAEAIG GLPLHVYRVRADGGKEKAPDHPLYRLLHDEPNPEMTSFVFRETLMTYLLLWGNAYAQVIR NGRGEVIGLYPLMPNRMAVGRDSAGRLYCEYQRTTDEPPNAQYERVVLSSSEVLHIPGLG FDGLVGYSPIAMATNAISMAQACEDYGGSFFANGAAPGGVLEPPGVISDPARVRESWTQT FGGARNGNKIAVLEEGMKYTPISVEGSGFFGPFVVRGLF >gi|292820418|gb|ACYT02000061.1| GENE 19 13728 - 14108 384 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191855|ref|ZP_06609316.1| ## NR: gi|293191855|ref|ZP_06609316.1| hypothetical protein HMPREF0970_01658 [Actinomyces odontolyticus F0309] # 1 126 1 126 126 228 100.0 1e-58 MSGSTEFEEVRVEIERDGKPVVVAFQGRRLSRVAYVRDGRETVYRAYATPKDKIAVTKRS AVAWQASAHLNEETWAGIANGNEWWQPTYALFVADTWEELRTQLDAEIVAKLQGKAEPVP VEHLDL >gi|292820418|gb|ACYT02000061.1| GENE 20 14584 - 15630 1541 348 aa, chain - ## HITS:1 COG:Cgl0253 KEGG:ns NR:ns ## COG: Cgl0253 COG0136 # Protein_GI_number: 19551503 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Corynebacterium glutamicum # 6 343 4 342 344 410 67.0 1e-114 MSGFNVAVVGATGQVGRVMRTLLEERGFPVETIRFFSSARSAGQTLTFKGQDIVVEDVAT ADYSGIDIGVFSAGATASREYAPKFAAAGAVVVDNSSAWRKDPEVPLVVSEVNPDDVDNR PKGIIANPNCTTMAAMPVLKPLVEAAGGIKRLFVSSYQAVSGSGRAGVAELTSQIEAGVK QDLAGLALDGRAVTLPEPGVYVAPIAFDVVPLAGSIVDDGSEETDEEQKLRNESRRILHA PDLAVSGTCVRVPVYTGHTLTIHAEFAGDITPDQARALLAQAPGVRVVDVPTPLEAAGRD EVLVGRIRHDQAVDGNRGLVLVVSGDNLRKGAALNAVQVAEVVAARLR >gi|292820418|gb|ACYT02000061.1| GENE 21 15775 - 17091 1751 438 aa, chain - ## HITS:1 COG:MT3812 KEGG:ns NR:ns ## COG: MT3812 COG0527 # Protein_GI_number: 15843329 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Mycobacterium tuberculosis CDC1551 # 1 438 1 421 421 424 56.0 1e-118 MALIVQKYGGSSVADTEAMKRVAQRIVDTHNAGHRVVVVVSAMGDTTDDLLDSAAALTDA PPEREMDILLSAGERISMALLAMAVNELGVEARAYTGAQAGIQTDSHFGAAQIVGMVPER VARAVKDGQVAIVAGFQGISKDDDVTTLGRGGSDTTAVALAAALHADVCEIYTDVDGLFS ADPRIVPKAHRLRTLTQEETLEMAAHGAKILHLRAVEFARRYGVPLHVRSSFSEKNGTWI SDSPANPELKGLVPDAALKSPEENAMEKPVISGIAHDRSQDKITVTDVPNSPGVAARVFA VVAEVGANIDMIVQNLPISDPTKANITFTLPEGDARKALDALEAHHDEIGFNELRYNPNI GKLSLVGVGMRTNPGVSARLFSALSDAGINIDLISTSEIRISVVTRLDDLDRAVQAVHTA FGLDASETEAVVYGGTGR >gi|292820418|gb|ACYT02000061.1| GENE 22 17314 - 18624 1244 436 aa, chain - ## HITS:1 COG:MT3871 KEGG:ns NR:ns ## COG: MT3871 COG0642 # Protein_GI_number: 15843384 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 16 434 82 494 506 222 39.0 9e-58 MSQSGGRGPRPGGPVIPGGPTGPGFGGSGISEGTLQYVSEDGEAAGAVISNFSVKYLDER ALAILADVPTDGAPHTVRLKGLGTFRVTSQVVDGKTVLVGVQMDSVDDVIFMLVAVEVGL SLVVAIAAGFAGRAWVRRELRPLGVVRAAAADIASRDLADDAEELTRVGEEATSGPVEVA DVAGALNSMIDAVEDGMERRARSEVKLRQFVADASHELRTPLASVQGYAQLARRDIDDAS RTQALERISSEGARMASLVEEMLTLARLDGDRALKRENVDVIPLILDALSDAHVVAPDHA WALGEAVDVQVLGDEAALRQILTNLLANARVHTPAGTRVTVSLTRVPQGAEPAKGAPASS MVTLRIADDGPGIPAEIRDRVFDRFVRGDSSRTRDGRGSSGLGMSIVESLARAMGGAVRL VDSEKGTVIDVTLPAA >gi|292820418|gb|ACYT02000061.1| GENE 23 18873 - 19580 710 235 aa, chain - ## HITS:1 COG:MT3872 KEGG:ns NR:ns ## COG: MT3872 COG0745 # Protein_GI_number: 15843385 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 12 232 63 283 286 244 59.0 1e-64 MATQASSDAPRVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILD VQMPRMDGLETLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAAR VEGLLRRAGRTQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIV LSKQKILDAVWSYDFGGQVNVVELYISYLRKKIDADRPALIRTVRGAGYIMREPQ >gi|292820418|gb|ACYT02000061.1| GENE 24 19793 - 20386 789 197 aa, chain - ## HITS:1 COG:MT3818 KEGG:ns NR:ns ## COG: MT3818 COG0353 # Protein_GI_number: 15843336 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 1 197 1 202 203 238 59.0 6e-63 MYDGALADLIDQFGQLPGIGPKSAQRMAMHVLDAEPEDVARLVDAINAVRGRVRHCDICG NLTEEDECSICRDVRRDPSVICVVQEPKDIQAIEGARVFRGRYHVLGGVIDPIHGVGPDQ LNIASLMSRLADGTVVEVILATNPNVEGEATAAYLARMLSTMGVETSRLAMGLPMGGDLE YADSVTLGRALEGRRRL >gi|292820418|gb|ACYT02000061.1| GENE 25 20388 - 20609 282 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508071|ref|ZP_02043713.1| ## NR: gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] # 1 73 895 967 967 82 97.0 9e-15 DGPLTGRAAAEAALREKAQREAAVDSTRTHAADDDSASIDDENIENSQMIGLAAVLEILG GRVIEEKMTEGGY Prediction of potential genes in microbial genomes Time: Tue May 17 06:57:49 2011 Seq name: gi|292820416|gb|ACYT02000062.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.6, whole genome shotgun sequence Length of sequence - 369 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 368 181 ## gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 Predicted protein(s) >gi|292820416|gb|ACYT02000062.1| GENE 1 2 - 368 181 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508071|ref|ZP_02043713.1| ## NR: gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] # 1 101 753 853 967 148 100.0 9e-35 QASSPNGDAAPRKRSFTVFRYPGDPEPADDPADAPVQPEPAPASSPVFDDAPIEPAAHTP STPTGWGDPVVISGGASVNFDDGADSWAPPESTAPADVTPISAAPSAPAHAPAWLAAAPE PT Prediction of potential genes in microbial genomes Time: Tue May 17 06:57:58 2011 Seq name: gi|292820414|gb|ACYT02000063.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.7, whole genome shotgun sequence Length of sequence - 740 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 740 333 ## gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 Predicted protein(s) >gi|292820414|gb|ACYT02000063.1| GENE 1 2 - 740 333 246 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508071|ref|ZP_02043713.1| ## NR: gi|154508071|ref|ZP_02043713.1| hypothetical protein ACTODO_00562 [Actinomyces odontolyticus ATCC 17982] # 1 236 501 736 967 341 97.0 3e-92 ERHESSAPQRSEAPARAEAPASGRDADMLRGRWNEVVERLSSISRVTWSMVGGNAQLGAV DGPQVVLLFPVEAMVNAFSRGPRAADVEKAINEVTGLTVSVSAQVGQASGGAATTGPSAQ ASHPGPAAQHFQPGSWVSEPPPFDEAAAQAAPQGDLEPADTGWPEPVLPPEPAQSGWPTT ARAPEPALEPEPVESAWPEPATVTPIRRDEPVAPAPAPITRAPDPQPAERPALPERAARA LAQAPA Prediction of potential genes in microbial genomes Time: Tue May 17 06:58:23 2011 Seq name: gi|292820388|gb|ACYT02000064.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.8, whole genome shotgun sequence Length of sequence - 32828 bp Number of predicted genes - 23, with homology - 20 Number of transcription units - 15, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1427 1164 ## COG2812 DNA polymerase III, gamma/tau subunits + Prom 1581 - 1640 1.6 2 2 Tu 1 . + CDS 1663 - 3114 1377 ## COG5263 FOG: Glucan-binding domain (YG repeat) 3 3 Op 1 . - CDS 3332 - 10708 4966 ## Chy400_0438 conserved repeat domain protein 4 3 Op 2 . - CDS 10636 - 10824 210 ## 5 3 Op 3 . - CDS 10817 - 10918 84 ## - Prom 10966 - 11025 3.4 - TRNA 11483 - 11572 59.5 # Ser GCT 0 0 - TRNA 11648 - 11737 58.9 # Ser TGA 0 0 6 4 Tu 1 . - CDS 11820 - 13160 1693 ## COG2942 N-acyl-D-glucosamine 2-epimerase 7 5 Tu 1 . + CDS 13410 - 15086 2495 ## COG0033 Phosphoglucomutase + Term 15121 - 15167 19.0 8 6 Op 1 . - CDS 15190 - 15708 560 ## gi|293191974|ref|ZP_06609334.1| hypothetical protein HMPREF0970_01678 9 6 Op 2 . - CDS 15783 - 17390 872 ## SACE_1016 hypothetical protein 10 6 Op 3 . - CDS 17387 - 17713 129 ## gi|293191976|ref|ZP_06609336.1| conserved hypothetical protein - Prom 17790 - 17849 2.6 + Prom 17699 - 17758 2.0 11 7 Op 1 . + CDS 17921 - 19195 1371 ## Xcel_1639 hypothetical protein 12 7 Op 2 . + CDS 19192 - 20490 1341 ## Xcel_1640 hypothetical protein 13 7 Op 3 1/0.000 + CDS 20483 - 22003 1741 ## COG2132 Putative multicopper oxidases + Term 22023 - 22066 13.0 14 8 Op 1 . + CDS 22155 - 23375 1722 ## COG0477 Permeases of the major facilitator superfamily 15 8 Op 2 . + CDS 23434 - 24669 1321 ## COG4850 Uncharacterized conserved protein + Term 24757 - 24810 7.6 - Term 25108 - 25149 6.8 16 9 Tu 1 . - CDS 25157 - 25771 819 ## Bcav_0533 hypothetical protein 17 10 Tu 1 . + CDS 25976 - 27124 1866 ## COG1960 Acyl-CoA dehydrogenases - Term 26989 - 27024 -0.5 18 11 Tu 1 . - CDS 27203 - 28447 1357 ## HMPREF0573_10830 hypothetical protein - Prom 28476 - 28535 3.6 19 12 Op 1 4/0.000 - CDS 28564 - 29376 490 ## COG1180 Pyruvate-formate lyase-activating enzyme 20 12 Op 2 . - CDS 29378 - 31243 2633 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 21 13 Tu 1 . + CDS 31310 - 31555 190 ## gi|293191988|ref|ZP_06609348.1| phosphate ABC transporter, permease protein PstC + Term 31581 - 31627 0.3 - Term 31499 - 31557 -0.4 22 14 Tu 1 . - CDS 31746 - 32270 883 ## Sked_10640 DoxX protein 23 15 Tu 1 . - CDS 32366 - 32827 -286 ## Predicted protein(s) >gi|292820388|gb|ACYT02000064.1| GENE 1 2 - 1427 1164 475 aa, chain - ## HITS:1 COG:ML2335 KEGG:ns NR:ns ## COG: ML2335 COG2812 # Protein_GI_number: 15828258 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Mycobacterium leprae # 5 467 3 468 611 425 50.0 1e-118 MTTALYRRYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARC LNCAQGPTDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRDR YKIFIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVP PDVLGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSVRDTLSVLDQLMAGAIDGQVTYQTAV ALLGYTDSALLDESVDALAGGDGAAAFRVVERMVESGHDPRRFVEDLLQRLRDLLIIAVA GDGARDVLVDTPHDQFERMQRQAQNWGPHGLSRAADLTDEALRAMTGATSPRLQLELLVG RILVPSPGPAQAPVQGTVGMTGGGAPREASAPSSSEASSGRFGAREAREALARKKQERAE VSAPAAQAPHRLPRLLPRACPRGGAAPTGPLRSLWPRSRAPLRRRPRDRRLRATR >gi|292820388|gb|ACYT02000064.1| GENE 2 1663 - 3114 1377 483 aa, chain + ## HITS:1 COG:SP2190 KEGG:ns NR:ns ## COG: SP2190 COG5263 # Protein_GI_number: 15901997 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 178 335 514 669 693 171 49.0 3e-42 MRNISVRLLRCIGASAATIACIGLFPLAATASGANDIPSVDASSPSAAASPDVGSEAPDP SGHEDSSPAADASGPTSERQATSQADAATDSVETPSLDHDSTSADAEREPTSPEATSGHW VRHEAGWRYELVDGTWMKDGIFDVEGRRYAFDVRGYVPVGWYKDPSGAWYASTENGVRTG WYHEGGSWYHLGDGGTMTTGWLSSGGSWYYLSAGGQMVTGWSHIDGSWYYFDASGAMNAS KWVRSGSWYYLGDSGAMATGWFIAGGRWYYAEWNGAMTTGWVLSDGSWYHLDSSGALSTG WLRDGGGSWYYLDSARGGAMATGWSQVGGTWNYFDRWKGFWVSDRTGFEADWNYAKSLYS PTNYLVVVDTNAPHCMTFYWADGSWQPLTDMPCSVGKPSTPTITGTFTIKNRGRSFGHGY TAYWWTQFSGDYLFHSVLYYEGTYTIMDGTLGGHVSHGCVRLRYEDAKWLHDTIPSGTYV TIY >gi|292820388|gb|ACYT02000064.1| GENE 3 3332 - 10708 4966 2458 aa, chain - ## HITS:1 COG:no KEGG:Chy400_0438 NR:ns ## KEGG: Chy400_0438 # Name: not_defined # Def: conserved repeat domain protein # Organism: Chloroflexus_Y-400-fl # Pathway: not_defined # 1194 2401 3525 4726 5505 259 28.0 9e-67 MQRLRPLHSRHSNRAARYAMLYAVIVLSFLAGFLTPLTTPAFAAQQEADAAQVASDGADA PEGTVVGDSDGAGAPSAQATAEEETAGDPDGDQSGGQTDGSEQPRARSRRSIDEAQDTAN LTMTIANDADRVKVRDTQITTVNFACSSVNVPCRGGVITVDIPAPTTPDGQVLTTRMAAS VVSGNNVQRLVPSYPFAGSGLYRLTFYMKEPLAAGTSDRLQINWWYPNNDAPDGSTVDVT ASFSAKNAESVDARATTTLTASSDVAIEKKKLGAPPAFGSTASYQLRYGYQQIDNTDSNY VGIRWNGSAYNGNQNGLGFVELQNIKVVDPLPDGAEFVSATGGGVYDSATRTVTWSYDSW SWQNPIQNTVVLRYPQGSYDISDQVTNTATITAEQKNNPAVTYSKSSHATHGFAPSNPRG QISKQGDDYNGAFRKGTYQWRFAVNNSGNTTLHQVWDDTLPCTWSTQDAAAGNCDTPSLV GPYEFYIFRPNGSEEGWNWEYWTNTGEHVVLNNQTETKRVELPEGQYITRIRIESDVAPG NGATVWFRGHVPEDFPREEPSDFDSRYNPASKPESYFNYVKSDEYVRVQNCASATLTDVA SGRVLASNDNLCSWNRVKTDFPSLHPSVDAPRGLVKVGDRLPLTLNVSIRNPEDRGVAAP FVVTDLLPLGVDMDEIPDSAFRETALKNPDGSPYDVSQIKREIIKDYEGTGRTLIRLTVP TPAYNLLRVILETTTDSRLSAGKVENRVQAKFVDSEVEPYTRTSSFRLREYCPRAVVAQD TLDLNGSGGTTDYMCETPSSFVVAVSPGMTIEKEVRGNRDADFVSSPKIAQIDPGSDGAY RFTISNTGNVALKQAVAYDLLPHLGDTGVGPAASQERGSKWKPQINSTQWTFESVTETPG QEATVSAVPASDITVQYTTALNPCRGEVLSAGGAMNQAPAGCTPNAWGDAPANLADVTGF RLVMNRDIAPGEKIRFVAPITSPADANYTAWNSAALSGGYDQNGKTLYLLPSEAPKVGIE VVTDLALSKDAVKAVVDSGQPVLGGDGLPQTATPRQLLSAGDYVLYRISVVNNGPAAASG ITVSDALPEGVEYVASYTRLCPPGGDQQPVVPCAGTVENGNYDPASSTWQVMPSEQAGTN LPVWASSTLYILAKISDTTKGRTIKNRAEIGQYDQIDRDPSNNEASADISVGGTISGLVY NDADADWNRADDGEPPFEGVTLTLLDSNGQPVLDGSGAEVTTTTDAHGAYSFPGLPMGTY SVRITRGTATVDGAQVSMDDYTATYAWGRSPDRSYAGVDSSTTSPIALTQQSPDASNVDF GFTKPAKIGNRVWFDANKNGLQDEGERGVPHVGVYVMYSDDLGALDASGNPVQQVFTDEN GEYHFDNLLPTPKNSDVQYRLLFFLPEGYSATTSQVGEDRAIDSNGDDSLFSLKQGQVDD TFDLGLVADGRVEGTLIWDINNQGGAVPTSVDRPLAGVTVTLTRRDGGTDTTIETQTDAD GHYSFKDLAPGDYTVTVDRDSLARICPECTAQTHAPSGDMVASVGQQLSLTSKVSLVPTH MMVGSQDFAFTGPANTSVEKAITSPATEPDGGFEPGAEVTYTLTMTNRGPSPVTGWSAND PLPAGVEFVRSAGDGTYSADTGLWDLSGQLIEKDATRSLTITVRVTAEAAGRVVTNTVTV ARQDQIGDDASDNTASADLSAGYVLSGKVYNDADASFSAGNNETPYAGVRLTLTHPDGTP VLGSDSQPVTAETKADGTYSFTRLPLGDYRVSIMNPDGGALQGTKPTEAYNSRYKNTADV SIAKATGSVVDVNFGRVKPASIGDSTWIDVNRDGLQGADEPKLPGVRVRLTDVNGSPVTD ADGHDVADAVTDEQGHYTFENLLPGTYKVSFQAPAGYTPTQVSAGSDPKADSNGDNADVT LEQGSSEDTIDFGAVGTGVVGDRIFVDVNHNGGSEPDRADRPLSGVTVKLTWRGPAGATA TYEAVTDAQGAYRFNDLLPGDYTIEVDRDSLTKAEALLNVQTHAPGGDTDRTPGNEWTLT NEFTLTGDHMTRTDQDWAFAISADAAIAKAITNPSADEQENFQFTPGKQISYTLTVTNNG PGPATGVTASDPLPAGVSFVSATGDGTFDQASGAWDLSDQVIASGESRTLVITVRIKSES AGTLVSNVAQITHQDQSGDDTTNNRASAHFKGGYNLGGLVYRDSDGSYTKGEQETPFAGV TVALLDADGQPVTGQDGQPLTAATDQDGRYQFVGIALGTYRVSVVGTDSGDLAGLLPTQA YKGRGQINEKSVAAQVSVSAETGSVEGVDFGFVSPASVGDRVWIDANRNGTQDPGEASLG GVVVILSDGSGTEIARQTSDANGSYRFDGLLPGTYTVAIEVPTGYEAVATTTLEVTLSEG EVKDDVDFPLAPIVIPSNPILPSAAGALARTGADTVVGWAALLAMAGVTAVHARRRRK >gi|292820388|gb|ACYT02000064.1| GENE 4 10636 - 10824 210 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDNVIQYPNEWCASLTVHSFRYNVSGVMRKGLRRTKRIVCNAYAPCTRGIPTELLAMPCC TQ >gi|292820388|gb|ACYT02000064.1| GENE 5 10817 - 10918 84 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSLKVVYKSVLAGRMGQMVKLTSIIIIQKLHG >gi|292820388|gb|ACYT02000064.1| GENE 6 11820 - 13160 1693 446 aa, chain - ## HITS:1 COG:ECs4803 KEGG:ns NR:ns ## COG: ECs4803 COG2942 # Protein_GI_number: 15834057 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Escherichia coli O157:H7 # 1 427 1 409 413 179 29.0 8e-45 MGWFDSIEHNRWLSGHMQALIEEAEGAIVATGFAHLDADGKPDLTRSIDLAVTGRMAYVF SLGALMGLPGTRRYADHAVKALTNCFTDPVNGGMWFAIKPEPDADGHGVPWDEDARVKSQ YHTVYALLGVAAATVANRPGAHELLNRMLEEQKELWTDDFGLVWDQYDEAFNEPVPVHTL GTLIHTIEAYMAAAEATTEPEWLDRAEKMTAFAYKIASKNGWRIPEYFDENWQPSPEAGK LLNDGRRYYEGYVTGHSMQLARFALQVRAGLRSMGWTVPDYLLEMGTELFERARVDGWRR TDGNPGFSTGVNDEGDPVPGEDEHQQWVVCEGVCATVAVRRAMLDDGARVSDVEHFEHCY RSFVDYIHDYLISQPGRWVRRLGPCNENVQPAKSSRWDVYHAVQATLAIRLPLWPPTAPA LSRGLLDRPEEPAPDKKSWNFFGLRG >gi|292820388|gb|ACYT02000064.1| GENE 7 13410 - 15086 2495 558 aa, chain + ## HITS:1 COG:Cgl2489 KEGG:ns NR:ns ## COG: Cgl2489 COG0033 # Protein_GI_number: 19553739 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Corynebacterium glutamicum # 2 556 3 552 554 680 66.0 0 MHERAGTRALPEDLINVDDVISAYYDIVPDPTDVGQRVAFGTSGHRGSSLDAKFNEAHII AITAAIIEYRASQGFNGPLFIGRDTHALSEPAWRTALEVLAAAGIDTRIDSRGSYTPTPA VSVAILGANGAPGNLRTEGDGLADGIVVTPSHNPPRDGGFKYNPPHGGPADTDATGWIAA RANELLDSGEWKNVPRVTGSDLLHDPNIKPFDYLDYYVSQLDQVIDIEAIRNAGVRIGAD PLGGASIDYWAAIGEHYGLDLTVVNPEVDPAWPFMTLDWDGKIRMDCSSPYAMASLREAM TPDAEGNTPYDIATGNDADSDRHGIVTPDGLMNPNHFLAVAIEYLFTHRPGWNADAAVGK TLVSSALIDRVVATMGRDLIEVPVGFKYFVPGLLSGTVGFGGEESAGASFLRKDGTVWST DKDGIILALLASEILAVTGKTPSQLHEEQVERFGASAYARIDAAASREEKAKLAALSADD VTATELAGDPIVAKLVRAPGNDAPIGGLKVTTESAWFAARPSGTEDVYKIYGESFKGAEH LAQVQEAAKQVVSDALNG >gi|292820388|gb|ACYT02000064.1| GENE 8 15190 - 15708 560 172 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191974|ref|ZP_06609334.1| ## NR: gi|293191974|ref|ZP_06609334.1| hypothetical protein HMPREF0970_01678 [Actinomyces odontolyticus F0309] # 1 172 1 172 172 347 100.0 2e-94 MNSEQKELLARASRMESIEAFQRDVEPAIIAARDQLMTRENYRGYYRNDVITRNNVGDHV LYAFISRSYDFDEHDPIRVRDVFDAALAPRGFVCSEKADVLQDGTTDTVLIWGSERFGAT VHVMVSESWLTSVNYYTDPLLSDGSVGDPKMLMELPGRIPQWFLDVAAGTQS >gi|292820388|gb|ACYT02000064.1| GENE 9 15783 - 17390 872 535 aa, chain - ## HITS:1 COG:no KEGG:SACE_1016 NR:ns ## KEGG: SACE_1016 # Name: not_defined # Def: hypothetical protein # Organism: S.erythraea # Pathway: not_defined # 116 527 118 538 566 174 33.0 6e-42 MKWADLRQWQMGPLSEQARSYADKQRVLAQAGDDLRAGVDALGGVGRTVTAAQAALRQDA AEIAKQEDKLGALSDVLSFAAHGVASICSAVASAEAAAARNMLAIHPDGSIGYVGPMEVS KDDARRIRQSMKQLADRVAEILRAARDMVSEIRSKLLALSMPGVAGALGAVASIGKDSSP KLPPPGATAKEVAKWWSSLTPEQKEKLINEHPYEIGKLDGVDGTSRDKANRLVLDIELPK LEAEYEEYKKKVGLIIDPFEAATLKKLKERAEAVRNIRTTLDRSDEDGMPRQLLGIDTSN PRVTAIVAQGNVDTAKHIGVIVPGLYSNVANNLDDYDDKASVMGANVRKHAHGEEVAMVS YLGYDAPQNKIEAAMIRKADAGAKQLAGFLNGMHASREYGAGDAHVTAVTHSYGSTTAGK ALTMTDKGAVDDLIQFGSPGSGVQSVDEFHLEKGHAWVSAAPYREDIVQGLGDDGRYGKN PAKMPGYNHLSGDVGPGEGWFVPFRKHSSYFNEGSEALDDISKVVAGRGVPRSTR >gi|292820388|gb|ACYT02000064.1| GENE 10 17387 - 17713 129 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293191976|ref|ZP_06609336.1| ## NR: gi|293191976|ref|ZP_06609336.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 108 5 112 112 188 100.0 9e-47 MSDLHFVAGEFRRLASTARDVADAVRQARPDGGASAFASAMPGAELTSLMQSVEEKCVDT CTVLGRNLDNHADSLDAADRDFIATEEDNGQLMSSIIRGLGFGGVSER >gi|292820388|gb|ACYT02000064.1| GENE 11 17921 - 19195 1371 424 aa, chain + ## HITS:1 COG:no KEGG:Xcel_1639 NR:ns ## KEGG: Xcel_1639 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 32 411 8 370 382 253 52.0 1e-65 MSEASRPPARDAGPDAPAQASSIATTRPPIPRLPAGRLAFLLLAGAALLAGLDASLVRLG ALAPVAATSLGTVHGLLMIYGFLGTAICLERAVALQSDGRRAWAYAAPLLTGAGGISAVI ISLNEGVREVLTNLPVPRFLAAHLPGFAPERMMPGFLVTLGMALLTAIYCYVWARRQATH AVLIQLMGALIGLGGILLWWRGLETPRAVPWWLAFLIVTIVGERVELARLAFASGSTERR ITAESAALMVGLTVALYSPTIGYPLIGLSLGVLAADTAWHDVARGTVRMSGLPRLAAVCM LSGYAWALVPALMWVIAPPAFDGYGYDAGVHAITIGFVVSMLLAHAPVIIPAVARREVPY HGAMWVPFAFLQVSLLLRLLAGAREAAYPWRLGGTLGVVGMLLFVATTLTVTIRRARANA REAR >gi|292820388|gb|ACYT02000064.1| GENE 12 19192 - 20490 1341 432 aa, chain + ## HITS:1 COG:no KEGG:Xcel_1640 NR:ns ## KEGG: Xcel_1640 # Name: not_defined # Def: hypothetical protein # Organism: X.cellulosilytica # Pathway: not_defined # 4 428 10 432 478 302 48.0 1e-80 MNKPRVPRTDRATSVWMCVAAIAAAITIIARGRIPQNLWTMIHLVTLGVLSNGIFQWSWY FTRALAHLAPDDRRAGRDNTVRITAFNLSLLLLIGGMWSGLWHATVTGATVVGAIAAWHG WALLTASRERLASRFAVIIRYYIAAAFFLVVGATLAGFVTAAMFDADAPTWLAKARDRLT VAHALAGIAGWVGLTMGGTLVTLGPTAMRTRMDPRAVSFATSALPLWVAALLVAGTGAVA GSMRVTSVGLLVVVGAATLGVGIPLVRVALKKGPAEYGAWSLMLGAAWILVAGAGTSLRA FQATDATGLRSAFLAWMPILGAAGLGQLFVGALTYLMPVVIGGGPSAVRVGVGVLEAGAP IRETARNVAAVLALAVAALGGTSAERLTIAAWVVLLATYLVDIVLMARCGVAQARAKRAA ASSPTTQGGSRG >gi|292820388|gb|ACYT02000064.1| GENE 13 20483 - 22003 1741 506 aa, chain + ## HITS:1 COG:NMB1623 KEGG:ns NR:ns ## COG: NMB1623 COG2132 # Protein_GI_number: 15677473 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Neisseria meningitidis MC58 # 216 504 49 345 390 149 34.0 1e-35 MADLNLSASPSSGGKKPKAPAPKVPTTGTPKLRMSPAGDHSPVSRTAGAIVGVVSVVALA LAIFLSNPSAPTTQSTGTGTGTTASSVTPTGHTTRVSVGVEGIAFTPNHIEVPVGDRLVI DFTNSGDQRHDLVFETGVSSGSLASGETKELDLGIISGDVEGWCSLPGHRELGMTLHVQA TGASSSSSSSSGTSASGSHAHHGHDHGQDAAAGPATPTALTDYAETIDARDPVLPPATNE TERHYTFTVTEQTVNVTSSLTRESWTFNGDAPGPILRGHIGDTFHITLVNNGTMSHSLDF HAGLVAPDNVMRSIEPGQTLEYTFVAKNAGIWLYHCSTAPMSMHIANGMFGAVIIDPTDL DKVDREYIMVASELYLGADGQPADASLLSALQPNAMAFNGVPFQYKAHPIQIKTNERVRV WVMDAGPNLATTFHVVGTQFDTVWREGAYVIRGGGSGGGWGQVLTLGAAEGGFVEFTPLE AGHYTFVNHALSLAEKGQVGVFEVTD >gi|292820388|gb|ACYT02000064.1| GENE 14 22155 - 23375 1722 406 aa, chain + ## HITS:1 COG:mll7465 KEGG:ns NR:ns ## COG: mll7465 COG0477 # Protein_GI_number: 13476206 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 1 387 1 385 407 205 35.0 1e-52 MLGTYLDILRYRQSWKFSAAGLVLRMPMSMVGLSTILMVRTEYGNYTLAGAVSAVNIIVM AICAPILARHVDRYGQLRVMGPAWIIATLSMCGLVAAVFMHAPEWLLFIPAALAGATWGA PGALVRSRWSTILHKPGQLPTAYALESAVDEFVYIVGPVLSTVLGTALHPATGLIISIVS LAVGGALFLSRRDSEPAIIPYDPSAPRESVIRKPVVLVMAATYIGMGMTFGAMEVSMVSF TEELGAPALGGILLALFSIGSLTAALVYGARTWRRPTWQLFVIGVIAMAIGMSLFPVAFS VWTMAIVILITGLTCAPTMTNVNVIIQNSVSPAKLTEGLTWMSTSINLGTSLGTAIAGPA IDAIGARGGLFTMAGAGWAMVLLMLIGLPALRKGTAATPKPTLPLD >gi|292820388|gb|ACYT02000064.1| GENE 15 23434 - 24669 1321 411 aa, chain + ## HITS:1 COG:Cgl2204 KEGG:ns NR:ns ## COG: Cgl2204 COG4850 # Protein_GI_number: 19553454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 34 397 22 336 344 228 37.0 2e-59 MRLRPPLIDDESPSLALALTAGVGEFASSLLVAAMSQGWYYPGVVGFGGIGSERSARILG RVLMARGDDGRSWLQTRRGWRQFFNAQVPRQPVLITVGNARRLTFADRGGFVDMTVLGHG LEPGWHDATIQVLHAGDVRALGLSEDTATKLATTLRTATPLPAPASAMYERPRKGHIRAG RPTSVRLRIVSDHEHFGVVSDIDDTVMVSMLPRLVTAAKHAFLDRVSSREAVPGMAHLLT TLTTSSASSEGVPEGTHSPVMYLSTGAWNVVPTVRSFLERSGYPAGGFLMTDFGPSNTGW FRSGPEHKRRELRRLARMFPHMRWLLVGDDGQHDPEIYAEFTREFPQCVAGIAIRSLSEI EQFMAHGSFEAMVPDALWTVPESVPVWYGSDGEALLENIRGRGTAGPLTSR >gi|292820388|gb|ACYT02000064.1| GENE 16 25157 - 25771 819 204 aa, chain - ## HITS:1 COG:no KEGG:Bcav_0533 NR:ns ## KEGG: Bcav_0533 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 22 198 37 213 220 79 35.0 6e-14 MSTPNAPRPALTPRQRFLRERQQRQNTTFAIIGIAMIVAAVAAALVFTGIVPVPFGNDFS VKVKYAETGDIPCPKVDAKPVAPSQVTVTVINTTQHQGLASKATDMLSTAGFQTEEPANS DVEYTGKVRITARADSVDAAYSVARFFPGSHVRLSDAEDATVTVELGTFYDDTMSAEDVQ RVLKSNDSIEQPAKCRPMSGTKQD >gi|292820388|gb|ACYT02000064.1| GENE 17 25976 - 27124 1866 382 aa, chain + ## HITS:1 COG:AGpT133 KEGG:ns NR:ns ## COG: AGpT133 COG1960 # Protein_GI_number: 16119880 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 376 16 391 401 246 38.0 8e-65 MSFLDSDLLARIHERAADADAANTYPEKDLEELREAGYLSAFVPTEFGGAGLSLTEIAAE QTALAKAAPGTALGINMHQIIVGLGRYLVANGNARGEQILRDAVAGEVFGFGISEPGNDL VLFGSTTRAIATADGGYSFEGTKIFTSLSPVWTRLLIFGRAETEEGPKSVFGIVHRDDEG YSIKDDWNTLGMRATQSMTTLLEGVTVPEERILTITDPGPSADPVIFGIFSHFEILLAAT YQGVGERAVEVAAEHVATRRSVKNQTTYSNDPDIRWRIAEAALIMNAVGPQIRELARDID EGVDRGRSWMPQLSAAKNAAAEATLRAVEQAMRACGGSAYYNTHELSRLYRDALAGLFQP SDQESLHAAWANLILGPIEKAQ >gi|292820388|gb|ACYT02000064.1| GENE 18 27203 - 28447 1357 414 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10830 NR:ns ## KEGG: HMPREF0573_10830 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 8 394 2 385 396 82 26.0 2e-14 MAEELHFDDPAAAAQDPSTDAEALRQLAYRYPELRPAVAAHPHAYRGLLDWLHQFNDPQV NAALEARDDYDGYIDSNGYLVMHGDVSGAVAGSSIRTSESGMYVLGQGGVNSYSQVERTT PYSAVVGTNAPVPQVGAREQVVAQVQRQSIIGSKGAQDPEATAVYPSASSGSSYPSASAT PARPQYTPQAYPGVGASHQVQPTVSQEAAPKEEKERRGFPMMGLVLGILGLIAVILLGFV IYVFTRGYEGPATSSDATPSASSSSPAHATPSPSATTEEPVKYPAPAGAITVDSFSSPSG NITCSFTADGVSCGIKESDWAEDGYASCSGGSQVGVLTASKDKAGQSCEAAVPGGGNALA YGAAATKGDYACHSTQDGISCWNTKTGQSFALARGGWMTGTTGEIGPQKFSWND >gi|292820388|gb|ACYT02000064.1| GENE 19 28564 - 29376 490 270 aa, chain - ## HITS:1 COG:PA1919 KEGG:ns NR:ns ## COG: PA1919 COG1180 # Protein_GI_number: 15597115 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Pseudomonas aeruginosa # 39 230 5 195 232 159 49.0 7e-39 MGARPHDDDAGATREGTPSLGVPGLVGGRDAREWTPDDLQIAGLVPMSTVDWPGRFAASL FLQGCPWACPYCHNSAIIDPRIPGVVAWGALEDLLARRRGLLDGVVFSGGEATRQIALGA AMARVRELGFGVGLHTAGPYPRRLKELLGAGLVDWVGIDVKATRGNYEAVAGRSGAGERA WESLSIVLAHPEVDHEVRLTVYPDGPGDGFEVAARAREMGVRIFALQQARDMGTPDGFSA TRPGWDDQVRSLARDIETLDFERFIFRGDS >gi|292820388|gb|ACYT02000064.1| GENE 20 29378 - 31243 2633 621 aa, chain - ## HITS:1 COG:RSp0963 KEGG:ns NR:ns ## COG: RSp0963 COG1328 # Protein_GI_number: 17549184 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Ralstonia solanacearum # 9 560 100 651 683 882 72.0 0 MTSAPRYDVDAIATVQEYLDRSDWRVNANANQGYSLGGLVLNSAGKIVANYWLEHVYTPE IGAPHREGDYHIHDLDMFAGYCAGWSLKRLIQEGFNGVGGAIASAQPKHFSSACGQIVNF LGTLQNEWAGAQAFSSFDTYMAPFVRLDDMEYEDVVQCMQELIYNLNVPSRWGSQCPFTN LTFDWTCPDDLADEHPLIGDEVVDFTYGELQREMNLINRAFIEVMTGGDADGRVFTFPIP TYNITPDFDWEGENVDALFEMTAKYGLPYFQNFINSDLDPHMIRSMCCRLQLDLRELLKR GNGLFGSAELTGSIGVVTLNMARLGYLYKGDEEGLVARMDELIDLASKSLEIKRETIQYH MDHGLFPYSQRYLGTLDNHFSTIGVNGMNEMVRNFSDDAYDLTDPRGFDMCVRILDRVRE RMVELQEATGHMYNLEATPAEGTTYRFAKEDRKRFADIIHAGTPDEPYYTNSSQLPVGYT DDPFQALEDQEVLQGKYTGGTVLHLYMGERVSSGEACKEMVRRSLTAFKVPYITITPTFS ICPVHGYLAGEHFTCEKCAAAHPHAEPQACEVWTRVMGYFRPVQSFNIGKKGEYHERQMF SESAADAHGELVSAFPPAGSR >gi|292820388|gb|ACYT02000064.1| GENE 21 31310 - 31555 190 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293191988|ref|ZP_06609348.1| ## NR: gi|293191988|ref|ZP_06609348.1| phosphate ABC transporter, permease protein PstC [Actinomyces odontolyticus F0309] # 1 81 2 82 82 151 98.0 1e-35 MSWDCVGRRAPLTLRFGGRRAGTAVRSRDRHVVDAPPSWGEAVALWAEVVSSARREAPLD LGECDHQSLDVMLDANSHHYI >gi|292820388|gb|ACYT02000064.1| GENE 22 31746 - 32270 883 174 aa, chain - ## HITS:1 COG:no KEGG:Sked_10640 NR:ns ## KEGG: Sked_10640 # Name: not_defined # Def: DoxX protein # Organism: S.keddieii # Pathway: not_defined # 8 173 21 185 186 141 51.0 9e-33 MPRSASAVVTSKPARFVLALLRIAVGFIFLWSFLDKTFGLHYSTGPSRAWINAGTPAQSY LTGATTGKPLASFFESLAVPAMDWLFMLGLLGIGLAFLLGIGTRLAAVAGVVMLGFMYAA VAPWVWGSLNPVVNEHLVYALVLILIPLTSAGDTLGLGLWWKGLGLVKKLPFLI >gi|292820388|gb|ACYT02000064.1| GENE 23 32366 - 32827 -286 153 aa, chain - ## HITS:0 COG:no KEGG:no NR:no VRAASFARRVVSKPARALRSLRRPPHRWGRVADWRVVSEPGQAPSPPHRCRVHTSLAALL AFSVQRVARLKPLSPLWPGLCAWVKPPLPLLARNVCFCCIVGEQRCRWFQGCPWTPEQWC HGFRWAATCVQLFARWPHQPRDILQLARSVNRP Prediction of potential genes in microbial genomes Time: Tue May 17 07:00:01 2011 Seq name: gi|292820374|gb|ACYT02000065.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont1.9, whole genome shotgun sequence Length of sequence - 13610 bp Number of predicted genes - 16, with homology - 13 Number of transcription units - 8, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 43 - 1134 1001 ## HMPREF0573_10842 hypothetical protein 2 2 Op 1 . + CDS 1396 - 1854 344 ## gi|293192028|ref|ZP_06609352.1| hypothetical protein HMPREF0970_01696 3 2 Op 2 . + CDS 1851 - 2333 573 ## Cfla_1554 hypothetical protein 4 2 Op 3 . + CDS 2330 - 5038 2086 ## COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 5 2 Op 4 . + CDS 5066 - 5623 219 ## gi|154508098|ref|ZP_02043740.1| hypothetical protein ACTODO_00591 6 2 Op 5 . + CDS 5650 - 7197 1020 ## gi|293192032|ref|ZP_06609356.1| conserved hypothetical protein 7 2 Op 6 . + CDS 7191 - 8381 980 ## COG1404 Subtilisin-like serine proteases + Term 8394 - 8430 -0.7 + Prom 8456 - 8515 1.5 8 3 Tu 1 . + CDS 8570 - 8935 88 ## + Term 9007 - 9039 1.4 9 4 Tu 1 . + CDS 9142 - 9444 100 ## gi|293192034|ref|ZP_06609358.1| conserved hypothetical protein + Term 9470 - 9528 -0.8 10 5 Tu 1 . - CDS 9313 - 9474 118 ## 11 6 Tu 1 . + CDS 9929 - 10180 74 ## - Term 9941 - 9988 17.8 12 7 Op 1 . - CDS 10136 - 10534 258 ## gi|154508101|ref|ZP_02043743.1| hypothetical protein ACTODO_00594 13 7 Op 2 . - CDS 10564 - 10902 321 ## gi|293192036|ref|ZP_06609360.1| conserved hypothetical protein 14 7 Op 3 . - CDS 10899 - 11171 297 ## gi|293192037|ref|ZP_06609361.1| putative membrane protein 15 8 Op 1 . - CDS 11304 - 12464 640 ## HMPREF0573_10742 hypothetical protein - Term 12474 - 12528 4.1 16 8 Op 2 . - CDS 12548 - 13609 480 ## COG4962 Flp pilus assembly protein, ATPase CpaF Predicted protein(s) >gi|292820374|gb|ACYT02000065.1| GENE 1 43 - 1134 1001 363 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10842 NR:ns ## KEGG: HMPREF0573_10842 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 90 288 16 215 285 127 43.0 6e-28 MDDPNAALPSDPTVDESYTKGSRPVRPRARSSASAETAGRSSRADSAPATQRPTRGRAPG PQTNGEAPASGPQPRRLTSDSWYRRKLARRLGGVATCLVLTMLISYVALSTAPGQVLDTI LMEGTMRSARRYEAFSTLITGIVSVPVMVAAGIVVALVAAARRRPTLAGRALGAVIGANI TTQILKDYILTRPNLGVTTGAGNSLPSGHTTVAVTLSLALIVVAPQWFRSPSAWIGWAWT SLMGVSVMMEGWHRPSDVITAALIAGAWALALSPIERRPRHGAKVQRVMVWVSLGLIVIA LLATGAAMWGFSMSAASPGSGYGFEDFLQVRPWRSRVLGVAAVAWVSAVCGLIMHEVDRL AGE >gi|292820374|gb|ACYT02000065.1| GENE 2 1396 - 1854 344 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192028|ref|ZP_06609352.1| ## NR: gi|293192028|ref|ZP_06609352.1| hypothetical protein HMPREF0970_01696 [Actinomyces odontolyticus F0309] # 15 152 1 138 138 283 99.0 2e-75 MAASSPVSTDRIRDLLRSRDVRFGDYNEGELAYLTPNAAFFWNATNPQILQLRAQWRGIA RTPEQFGELAHEVAACNSTRTGPKAYLAPLQDGTQYGLIAECNVVVMSGLTQAQLDNFFE TSMSMIMGFFADLEVTLPGFVDWDSQGREVSL >gi|292820374|gb|ACYT02000065.1| GENE 3 1851 - 2333 573 160 aa, chain + ## HITS:1 COG:no KEGG:Cfla_1554 NR:ns ## KEGG: Cfla_1554 # Name: not_defined # Def: hypothetical protein # Organism: C.flavigena # Pathway: not_defined # 8 138 22 150 173 61 30.0 8e-09 MNVPYLVPEDEVTPYPADFERVVQAVREMGYALDVIEKGRAAGAIFDEIPFLVSFDAAGR FLSIRALWESDLPAESAEPALFATADNWNREKYFPTVYTATSPEGTLGVYADFVVDTEAG LSDVQLRDAISSGISTGIAAIQYVKESASEALGLGESGRE >gi|292820374|gb|ACYT02000065.1| GENE 4 2330 - 5038 2086 902 aa, chain + ## HITS:1 COG:Cgl0307 KEGG:ns NR:ns ## COG: Cgl0307 COG1205 # Protein_GI_number: 19551557 # Func_class: R General function prediction only # Function: Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster # Organism: Corynebacterium glutamicum # 32 892 3 775 785 520 39.0 1e-147 MSADLSPSSQTSSSNEAGASSPGQARNGLSSPSPAHLLDVLERMSAGDDRLLGHVTLPGR SGKIADWPQWVSPAVVDAWARRGVEHPWIHQREALDAVREGLDPVLATGTGSGKSLAAWT PILSDLVEAEDSSRISGIHRRPTALYLAPTKALAADQLASLMSLLGQDGKPADVQASADA EGSPSLVDERLRRVRATTVDGDTPREAKEWARAGADLILSNPDFLHYVMLPSHQRWSRFL ASLRLIVIDEAHHWRGVTGSHIALVVRRLLRVAHHLGADPRVVMLSATVRDAAAVGHALT GRDAVAITEDGSPAGAHELVLWQGAIMADESEVDISSFLEALDAPPGTATLKVPIVRRSA GVEAANLATAFVEEGARLLAFVRSRAGAEAVAAQVRDRLSARGSANAGRVGAYRGGYLPE ERRALEEAIRTGGVRALATTSALEMGLDISGLDATITVGWPGTRASLRQQIGRAGRAGAP GTSVLIASANPLDAYLVRHPEHILGEVEASVIDPSNPWVLAPHVAAAAAEIPITPSDITY FGQELRGVTERLVADGYLKHRPAGYFWDATRAERPSDLTDLRGAAGDVQIVDVATGTVVG TIDQASADAHVFPGAIYIHQGRTFHVLSITSLTTPTAPATQGWPRALLPEAPGGTRGTER LGGGEREGAQASSIIIPPARTGDARVALVEEVRTPLRTRSTTHTSVEVCAVEETYVCGDG TVTWHHGPTNVSTRVTDYDLLRLPGLEFIRNIELFLPTHTLPTKSTWFTLTPAALATMGI EAADLAGTLHATEHAMIGILPIVATCDRWDLGGLSTELHDDTGAPTVFIHDAFRGGAGHV LAGFHSARSWVAATLEAISSCDCESGCPRCVQSPKCGNGNEPLSKQGAITLLTYLLERAP GA >gi|292820374|gb|ACYT02000065.1| GENE 5 5066 - 5623 219 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508098|ref|ZP_02043740.1| ## NR: gi|154508098|ref|ZP_02043740.1| hypothetical protein ACTODO_00591 [Actinomyces odontolyticus ATCC 17982] # 50 185 21 151 151 180 84.0 3e-44 MNAWSYADQRLIMFRRTRVGRTHYAGGAPWLTSLSIPTSTPKLGRTSNKGRAAIASSSEA ITRLSYGQYERFWTDEAGPQALRNAFIAFLGAYDKIAATERDTLRSFGRNVDQAIEDFAA VEQATGDELKALRESMGDPSTYTSPTPTSSTNPSSSPAGGSAPSTDPATTAGTSGAPTQD AQTDF >gi|292820374|gb|ACYT02000065.1| GENE 6 5650 - 7197 1020 515 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192032|ref|ZP_06609356.1| ## NR: gi|293192032|ref|ZP_06609356.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 515 1 515 515 805 100.0 0 MVSSPMYDRLMKFVEGVEESRKLSGYDSEHSAIIAGMGMMSARVSHFKEYQGFEGQTGEA IDGWIDRTQQRYNSERQGYVTGTEHYVEGRRLLVHAAEDAKLLSPTLLDKATEAMRGLAQ VVIPVTKHMGPFGETINTIATTGAAYVDAIEAQANAQREAAATAILQRVNDEAQKLADQL QAHTQRVEEFTTGLTNVEIPPTNGPSSPSVSDQLNQGNMWVSPHEAGVYGASRDDDYGRS DLRGQGSGLYADGYDEGGPIDSRVMSSKRIPNQYISEGELGSRLNPVTDPQDLMDIDLLH TRVNGDRHANGVIGGHTPASPVDRDHPLWRLNGGPASESSTAGRLGGAGILGAGALGLRG SARMGSATSSMGRAGGAGVGGSAASAALRTGSYSGAGFSKYTPPAPAGATGAGANGTSGV TGMSGTPGGANGAGSSAAGGRTQGAGGFMGAGGAGAGGKKDEKKAQRRRYTPFRFEDDED ELPEGYVNPLSQTYGSDKDLSPAPRKDDGWDPRQW >gi|292820374|gb|ACYT02000065.1| GENE 7 7191 - 8381 980 396 aa, chain + ## HITS:1 COG:slr0535 KEGG:ns NR:ns ## COG: slr0535 COG1404 # Protein_GI_number: 16332024 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Synechocystis # 59 277 136 359 613 87 33.0 5e-17 MVTRRNNTARLLGVAASTLVLAAGATTLPSGPAQAADIITAADQPYFAYYHLDQARAKGY TGQGVTIAILDGEVDTSAPELAGADITDKTPCTVTSSASTRQHGTDVASVLVAHDYGIAP QAKLLTYRIPLTSAGDTSGSDCRGQRSVSKDDISSLLNTAMNDGAMIISLSLAGTSNSDS LKWAMARALSQGVIITAGAGNDAKEQTYGSFGHWSGVVSVSAIGTDGNRQDYSSWGEGVV SAAVGGPITVRNLQTQQNEQAFGTSFATPLVAGSLALARQKWPQATSNQLLQLLIHTGTN PDHTWNKYTGYGGVAPGAMVNTDPIQYPDENPLTNKSTGPEPTPEEIEQYTDGVVSPFAI AYDNSYTYRGLDENVIGDSQNPYPTHLGTSPRYHGK >gi|292820374|gb|ACYT02000065.1| GENE 8 8570 - 8935 88 121 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVSAPRASAIRAVSFARRVGSLSGQAPPPSLPISPAPTGTAARPCGPSGALGTGGAFAAD VARRVALMPSYGCQPAISHAIPPVTLSNIEFALLELRHFQALLKLHPIELHAELGDEDSS L >gi|292820374|gb|ACYT02000065.1| GENE 9 9142 - 9444 100 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192034|ref|ZP_06609358.1| ## NR: gi|293192034|ref|ZP_06609358.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 51 100 1 50 50 99 100.0 8e-20 MLWARNGAVGFIARPRGGVQWCCRFHCAPRWCLPGIGDVKARDMVGILHYMKLSGRVSPA CRGSNDAISPIWWCDHRLTQRLVTLMSCNSPPFGGGEAAT >gi|292820374|gb|ACYT02000065.1| GENE 10 9313 - 9474 118 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLHFGEHTTSRCGLATTKRGGIARHEGHQALRQAVIAPPNGGNSVIRTATRR >gi|292820374|gb|ACYT02000065.1| GENE 11 9929 - 10180 74 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHETRQHILEGAGHKADPFEYPINTVQVFRCAPFLGSPFVGVALGLMTISVRTPPVGTIE RTWQFPVNLSPLGSGASPSAHIR >gi|292820374|gb|ACYT02000065.1| GENE 12 10136 - 10534 258 132 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508101|ref|ZP_02043743.1| ## NR: gi|154508101|ref|ZP_02043743.1| hypothetical protein ACTODO_00594 [Actinomyces odontolyticus ATCC 17982] # 1 132 4 135 135 181 97.0 1e-44 MYRGEPVVYGRAGDRSDEEGSGTINSVGLIVLALVLVVVLGGVGVAHRERVRLQAVADLA ALAGAEQSATAGWEDVGERPCGAAFAVAEANGVGVQSCEVRDLDCLVILTQPVRIAGFST NVSARARAGPER >gi|292820374|gb|ACYT02000065.1| GENE 13 10564 - 10902 321 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192036|ref|ZP_06609360.1| ## NR: gi|293192036|ref|ZP_06609360.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 112 1 112 112 171 100.0 2e-41 MNSDENGYVTVEHAIGFVAVTLVVGVIVAAAQAGMTGTSLCQAVREGARAASIGQTDPQG AASAAYPPGSYEVTRTGGWVSVTGTAPYRGAAGWIGGIARCSVTTIDEGDLP >gi|292820374|gb|ACYT02000065.1| GENE 14 10899 - 11171 297 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192037|ref|ZP_06609361.1| ## NR: gi|293192037|ref|ZP_06609361.1| putative membrane protein [Actinomyces odontolyticus F0309] # 1 90 1 90 90 130 100.0 2e-29 MTIIDRIDCAATRAQLIAMAAVQEGARALRPRTSAEPTEGRDPEEGATTVEYAIGTIAAA GFAGLLIVILKSDTVRAALESIIQEALNTR >gi|292820374|gb|ACYT02000065.1| GENE 15 11304 - 12464 640 386 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0573_10742 NR:ns ## KEGG: HMPREF0573_10742 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 64 381 79 403 408 120 31.0 1e-25 MCCQCCGAVYRGAREKRIVCAWARPTRVCSPGREARGRWGRLIPGPGRSARHRGRAQGPP TPRELSLLVAEVATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWR SLRRAERAPGVAASRVSAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVAA AGPLMSARVLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRIL ARCRRVEEGIDGALACDLVASALACGAAIPRALDALADASTTEALTWAAASLRLGATWAD AWEDTPEWSHPLRDALEASWTSGTAPETLLARSAAWERRSRLVDAKAQAEELSVRLVGPL GVFFLPAFLSLGIAPLLAHLVGGIGV >gi|292820374|gb|ACYT02000065.1| GENE 16 12548 - 13609 480 353 aa, chain - ## HITS:1 COG:Cgl0301 KEGG:ns NR:ns ## COG: Cgl0301 COG4962 # Protein_GI_number: 19551551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Corynebacterium glutamicum # 14 317 43 349 377 241 49.0 1e-63 AAASAPPGCGAAAVTSTLETLRARQRGMDPPLASLLDDPAVTDVLINGTQAWVDRGGGLV RVDAGIKDEADARRAAIRLASASGVRLDDARPIADGTLPGGVRLHAVLAPVSGSGTLISL RVLGTRRLGISDLAACGTLPGSVGTLLRALVASRANVLVSGATGSGKTTLLSAALALVPA GERIVCIEEVTEIAPAHPHCVHLIERAPNVEGRGAVTLADLVRAAMRMRPDRLVLGECRG PEVRDVLTALNTGHDGGWATIHANGAHDVPARLAALGALAGMSEHAVAAQAASAIDAVLH LRRAPSGHRWVSEVGVLTRARGSLECALALSATADGCVTTHEAWASLARRVGL Prediction of potential genes in microbial genomes Time: Tue May 17 07:01:45 2011 Seq name: gi|292820370|gb|ACYT02000066.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.1, whole genome shotgun sequence Length of sequence - 2544 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1 - 311 94.0 # CP000750 [D:2413250..2416396] # 23S ribosomal RNA # Kineococcus radiotolerans SRS30216 # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Kineosporiineae; Kineosporiaceae; Kineococcus. 1 1 Tu 1 . - CDS 409 - 678 142 ## - 5S_RRNA 559 - 669 89.0 # Z50061 [R:1..120] # 5S ribosomal RNA # Amycolatopsis orientalis # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Amycolatopsis. 2 2 Op 1 . + CDS 1002 - 2240 1230 ## COG2966 Uncharacterized conserved protein 3 2 Op 2 . + CDS 2237 - 2392 208 ## gi|293192078|ref|ZP_06609365.1| conserved hypothetical protein + Term 2485 - 2516 1.5 Predicted protein(s) >gi|292820370|gb|ACYT02000066.1| GENE 1 409 - 678 142 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCCGGVLLSHNLSVAVPLALPGLASRFGMGAGRFPGAMTTTSVGVQHAPPWCCGGGCGLI VVCIVVAAVVLVFLVHPNGVLGCCLVLAH >gi|292820370|gb|ACYT02000066.1| GENE 2 1002 - 2240 1230 412 aa, chain + ## HITS:1 COG:YPO0484 KEGG:ns NR:ns ## COG: YPO0484 COG2966 # Protein_GI_number: 16120814 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 1 239 29 261 266 76 24.0 1e-13 MLLSFGASAYRVKKSMADLARAVGISEHRAQVTYTEIIATAYANGTFRTELAEQRLMGVN ADKIDRINNYVASLNGKSVRVEDVSDELDKIAKVPGLYDWFSNALASGLACAAFAFLNGG GWVECSAVAVASFFGQALRRQMLIRHMNHFGVWMACGALAAMIYILLVAPAQHFLGIEST HQAGFISALLFLVPGFPLVTGLIDLVRQDFQGGVGRLVYVTMLVMSAGVDVWAISAVFGW SVTPEYGVSLVPWLHYLLRFLASFVAAYGFAMLFNSPQRVCATAALIGAVINTARIALHL ELGVPAPAAVGLAALAAGLLAVFVARRTRFSRVTLSVPAVVIMIPGVPLYRALTYLNNQQ IDDALSALFTVMFTIVAIGMGLALSRMLTDKNWLVEKEERVPNLWEYEEENA >gi|292820370|gb|ACYT02000066.1| GENE 3 2237 - 2392 208 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192078|ref|ZP_06609365.1| ## NR: gi|293192078|ref|ZP_06609365.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 51 1 51 51 84 100.0 3e-15 MNFEIEAGLKPPSFEVEYEIDRDEIRAVGRNIAIVCVAAVTARVLVALISR Prediction of potential genes in microbial genomes Time: Tue May 17 07:01:55 2011 Seq name: gi|292820369|gb|ACYT02000067.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.10, whole genome shotgun sequence Length of sequence - 965 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 1 - 345 92.0 # CP001618 [D:1607247..1610366] # 23S ribosomal RNA # Beutenbergia cavernae DSM 12333 # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Beutenbergiaceae; Beutenbergia. Prediction of potential genes in microbial genomes Time: Tue May 17 07:02:01 2011 Seq name: gi|292820350|gb|ACYT02000068.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.2, whole genome shotgun sequence Length of sequence - 18281 bp Number of predicted genes - 16, with homology - 14 Number of transcription units - 9, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 231 - 270 11.2 1 1 Tu 1 . - CDS 308 - 1900 2252 ## COG2985 Predicted permease - Prom 1937 - 1996 3.4 2 2 Op 1 32/0.000 + CDS 2238 - 4001 2558 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 3 2 Op 2 15/0.000 + CDS 4001 - 4513 733 ## COG0440 Acetolactate synthase, small (regulatory) subunit 4 2 Op 3 . + CDS 4516 - 5541 1804 ## COG0059 Ketol-acid reductoisomerase + Term 5566 - 5620 16.6 - Term 5434 - 5473 -1.0 5 3 Tu 1 . - CDS 5628 - 6113 119 ## + Prom 6076 - 6135 2.8 6 4 Op 1 . + CDS 6197 - 8419 3141 ## COG4409 Neuraminidase (sialidase) 7 4 Op 2 . + CDS 8562 - 9611 1374 ## COG0473 Isocitrate/isopropylmalate dehydrogenase + Term 9625 - 9673 17.9 - Term 9611 - 9660 13.5 8 5 Tu 1 . - CDS 9702 - 10724 798 ## gi|293192164|ref|ZP_06609376.1| hypothetical protein HMPREF0970_01721 9 6 Tu 1 . + CDS 10777 - 11247 585 ## COG0779 Uncharacterized protein conserved in bacteria + Term 11267 - 11306 12.1 10 7 Tu 1 . - CDS 11307 - 11612 112 ## + Prom 11287 - 11346 5.0 11 8 Op 1 . + CDS 11559 - 12602 875 ## Smlt0191 putative aminoglycoside phosphotransferase 12 8 Op 2 17/0.000 + CDS 12614 - 13642 826 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 13 8 Op 3 17/0.000 + CDS 13626 - 15242 777 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 14 8 Op 4 . + CDS 15224 - 16138 895 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 15 8 Op 5 . + CDS 16363 - 17391 600 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA + Term 17401 - 17453 12.2 16 9 Tu 1 . + CDS 17920 - 18280 438 ## gi|293192172|ref|ZP_06609384.1| translation initiation factor IF-2 Predicted protein(s) >gi|292820350|gb|ACYT02000068.1| GENE 1 308 - 1900 2252 530 aa, chain - ## HITS:1 COG:Cgl2162 KEGG:ns NR:ns ## COG: Cgl2162 COG2985 # Protein_GI_number: 19553412 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Corynebacterium glutamicum # 8 527 4 534 539 224 33.0 2e-58 MHQVFEILSEQPVLFLFLLIGIGMAFGHVKIRGISLGAAAVLFFAIALAAWAQSYDIELR VTPQLGTLGLTLFTFAIGINSGASFFHNLKTAVGPILSMVALYGITATVGLYLGKAMGMD VPLIAGTFAGSVTNTPALAAAGEASGDPARATVGYSIAYLFGVIGMLAASMAALHYGRND KDAPSPLSNRTIRVERDDHPFVGDIYEKLGEKVSFSRLRRGETGPITRPQMSDTLDPGDL VTVVGPRELVARAATELGHASSHSLMQDRSYLDFRRMTISNPKVAGRTVASLGLAKEFSA TISRVRRGDVDMVAEPGLVLQQGDRVRVVAPTSKMAEITKFFGDSSHGLTDLNPIALGIG MALGIAIGELPILTPSGEYFSIGSAAGTLIVGLIFGRVGRIGPIATALPFTTCQVMAELG LLIFLAQAGAKAGGQILEAFTSGDWIRIFALGFIMTSIMAVGLYCTMRWVFKMGGTKLAG LLGGAQTQPAVLAFANGRTNADPRVALGYALVYPVAMVGKIVVAQILGGM >gi|292820350|gb|ACYT02000068.1| GENE 2 2238 - 4001 2558 587 aa, chain + ## HITS:1 COG:ML1696 KEGG:ns NR:ns ## COG: ML1696 COG0028 # Protein_GI_number: 15827903 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Mycobacterium leprae # 9 586 44 620 625 687 59.0 0 MSDTANTTRMTGAEAIVASLEALGVTDVFGMPGGAILPTYDPLLASTSIRHILVRHEQGA GHAAEGYALATGKVGCAIVTSGPGATNVLTALGDACMDSVPIVVISGQVGASLIGSDAFQ EADIVGASMPITKHSFLVTDPAEIPARLAEAFHLAGTGRPGPVLVDITKSAQVAEMDFSW PPAIDLPGYRVADKPNMKQVRAAARAIADAQAPVLYVGGGIVRSGSTDALADLVDVTNAP VVTTLTARGAFPDSDRHNLGMPGMHGTVAAVGALQRADLIVALGARFDDRVTGRLDSFAP RATVVHIDIDAAEISKNRHADIPIVADLATALPILTEEIAHASSDNKADISGWWRYLDRL RTKYPIGWAEPEDGMMAPQEVIKKLSDKVGPEAIYVTGVGQHQMWSAQFITLDNPRSFIS SSGSGTMGYCIPAAMGAQVAAPDKVVWAIDGDGSFQMTNQELATCTINNIPIKVALINNS VLGMVRQWQSLFFGKRYSNTTLNPVEGEQIPNFEMLAQAYGMAARTVRSIDEVDEAIEWA MSINDRPVLIDFRVSKDSMVWPMVAAGVSNDEIRYAKGMAPDWEVED >gi|292820350|gb|ACYT02000068.1| GENE 3 4001 - 4513 733 170 aa, chain + ## HITS:1 COG:MT3082 KEGG:ns NR:ns ## COG: MT3082 COG0440 # Protein_GI_number: 15842560 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Mycobacterium tuberculosis CDC1551 # 5 163 6 164 168 175 60.0 4e-44 MTNRHTLAVLVENKPGVLTRVAALFARRAFNIKSLTVGETEHPEISRMTIIVDADSAPIE QVVKQLNKLINVLKVVELEPEDSVERRLLMMKVQADETRRTSVLQIVDLFRAHVVDVQPE SVVIESIGSLSKLEALLRALEPYGVTELVQSGAVAIGRGSRSITDQLKEK >gi|292820350|gb|ACYT02000068.1| GENE 4 4516 - 5541 1804 341 aa, chain + ## HITS:1 COG:all2315 KEGG:ns NR:ns ## COG: all2315 COG0059 # Protein_GI_number: 17229807 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Nostoc sp. PCC 7120 # 1 327 1 327 331 388 62.0 1e-108 MAEIIYDDGADLSLIQSKKVAIIGYGSQGHAHALNLKDSGVDVVVGLRPGSSSWAKAEAA GLEVKDVAEAVAEGDVVSVLLPDQVQRYVYAEQIAPNLKEGAALLFAHGFNIRYGYIEVP EGHDVVMVAPKGPGHKVRETYTQGKGTPDVVAVEVDASGQAWDLVLSYAKAIGGTRAGVI KTTFTEETETDLFGEQAVLCGGVSHLIQAGFETLVEAGYQPEIAYFEVCHEMKQIVDLIN EGGITKQRWSCSDTAEYGDYVSGPRVINESSKEAMKAVLADIQDGTFARKFIADQDNGAL EFKALRAEEEAHPIEKTGQKLRKAFGWTDSDEDYTEGSAAR >gi|292820350|gb|ACYT02000068.1| GENE 5 5628 - 6113 119 161 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTNQLYDMYAPHQTPWITQNHKDANNCDTPLARQLRPEGANSTIPTHTDSFRCHTLCLR HDSGALPANKPAPNRSNPISLDRVTELERTPDTRFQREEKTGLGQRWDRARSRARHHDAT SSTLLPRLSSRQAAHALPSALRGPRSVLAHPQRPNPSAASG >gi|292820350|gb|ACYT02000068.1| GENE 6 6197 - 8419 3141 740 aa, chain + ## HITS:1 COG:Cgl1519 KEGG:ns NR:ns ## COG: Cgl1519 COG4409 # Protein_GI_number: 19552769 # Func_class: G Carbohydrate transport and metabolism # Function: Neuraminidase (sialidase) # Organism: Corynebacterium glutamicum # 193 527 68 399 399 303 52.0 9e-82 MTLRHYGRALAALSGAALLCATLSVPAFATPTSDTDAAAPTVVAATDEESAPITVTATRT DSHGDKVYEGDLITVTFTYTNNTDNALTVFPVDSNLSGVLTTGAPNCRWHNLAAHTTKQC TTATHTVTAADVAAGSFTPTSTWAATRDRNGTDVIAGGITANADPVTVTQGDRPPAPDPL ETPQDYAIGDKVRLASPGLAGFSCHRIPALTTANNGWIIASWDGRPNTCQDAPQANSIVY RISKDGGKSWTPIKTALAGTPGAQKIGYSDPSFVVDRTTGTIFLFSVKSYDAGLFQSQLG TDPVARNILHAHVVESHDNGETWGNPRTITDQVTAGYEGQWFTRFASSGEGIQLRYGAHA GRLIQQYAVANSGTTSLMAVSVYSDDHGATWKPGAPTEGSADENKVVELSDGRLLLNSRT QGTAGQRLEAISYDGGQTWGPFRHNWDLTDPRNNASIVRAYPDAPEGSARARVLLFSNAD SASARANGTIRISYDDGFTWNDGKVFESGEMAYSTLHPLGDGTWGLLYESGGYKNIEFMR LDADYLGLTDPGEEDAPEPEPTPDPQPQPAPEPNPTATPAHWVNTGSGWKWQLEDSSYAM NQTIVIGEATYRFGADGMMVTGWDNQGGVWSYYNAYGTRASGWLTDAGSWYYLDPATGAM ATGWTQIDGTWYLFSASGAMLTGWQHAGSWYYLAPSGAMLTGWQHIGVTWYYFAGDGHMV TGWQMIDGRWYYFASSGAWI >gi|292820350|gb|ACYT02000068.1| GENE 7 8562 - 9611 1374 349 aa, chain + ## HITS:1 COG:Cgl1256 KEGG:ns NR:ns ## COG: Cgl1256 COG0473 # Protein_GI_number: 19552506 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Corynebacterium glutamicum # 3 345 1 334 340 419 65.0 1e-117 MTLNIAVIPGDGIGKEIVPEGLKVLDRVLADKGIEYSTTLFNLGAERWHATGDTLTDEDL EAIKRHDVILLGAVGDPSVPSGVLERGLLLKLRFALDHYVNLRPSKYYEGVPSPLANPGD IDFVVVREGTEGLYCGNGGAVRVGTPHEIATEVSVNTAYGVERVVRYAFEAAASRKKHLT LVHKHNVLVNAGHMWRRIVDEVGEEYPDVSVDYCHIDAATIYMVTDPGRFDVIVTDNLFG DILTDEAGAVTGGIGLSASGNLNPSREFPSMFEPVHGSAPDIAGQGKADPTATISSVALM LDFMGFAEEAERVRAAIDADMTARAEAAASGSPLVRSTSQIGDDIAARV >gi|292820350|gb|ACYT02000068.1| GENE 8 9702 - 10724 798 340 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192164|ref|ZP_06609376.1| ## NR: gi|293192164|ref|ZP_06609376.1| hypothetical protein HMPREF0970_01721 [Actinomyces odontolyticus F0309] # 1 340 1 340 340 438 100.0 1e-121 MWDDADVRFAKLTLTTRRLPGLAATGAALLALSACSSSSLPALSGFDAVRDQAARTEVAA SERATQLAEVATECASCSAALRSVASASHERLEVLGGLWDPWGGATPEGESAPAAVSEAP TDVSAFVSWLARTATRDLEIAADPNRTTSEEARTLSAASLGRYASAVTIAHAYGIEVDTG LDQALLVNDRVNAASRQGVQTWSIDLFDSPTLSSSFAPSGKKLPDSEELSTAVATWDCTA STLPKAQVSAGSLSDAYAVSGELLVRADIALRAGATDTRSPRCNLGFLDASSLAANLLAA DAAMLASDSADVRAAGASAALADIEQWAPRATLPALIGAH >gi|292820350|gb|ACYT02000068.1| GENE 9 10777 - 11247 585 156 aa, chain + ## HITS:1 COG:Cj0138 KEGG:ns NR:ns ## COG: Cj0138 COG0779 # Protein_GI_number: 15791526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 50 152 36 140 140 81 36.0 6e-16 MASSTSEGPLEELLTPVVAQSGLELDSVIRSRSDAMPLLRVIVEAPIGAGGIDSDTLAEV SRAVSKALDAADPIDGEYLLEVSTPGAERELTKVGHWMRQIGRLVRIKLRAGGYVSGRVV AADETSATIDVDGETTIIDYQDMRKARSRVDFGSGD >gi|292820350|gb|ACYT02000068.1| GENE 10 11307 - 11612 112 101 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDLQDGTCERGGEAGKHPPAFVFGDDGPDPGRHVKVFVAVAHYGSFACAHEPSWKKCLR PYAGMIRIRCVGRRIASLSAPYCQGSRASRHTLHPDGGYIK >gi|292820350|gb|ACYT02000068.1| GENE 11 11559 - 12602 875 347 aa, chain + ## HITS:1 COG:no KEGG:Smlt0191 NR:ns ## KEGG: Smlt0191 # Name: not_defined # Def: putative aminoglycoside phosphotransferase # Organism: S.maltophilia # Pathway: not_defined # 17 332 62 377 388 155 35.0 2e-36 MLARLATPLAGTVLQVSHRPTAAGILVDAGTSTVFIKRYAPGAVPADHLRAVHGLVAHIR ARGFPTPAFLPFADSDTVWETPTGTWEVCEGAIGEDRYRDDLTWTIPGTLDEAHALGSMT ARLALASSDYHAALNPPSAYQSRMRLFAQDPRRDLPQWLAERPGVQAYLRDSGRRIEDEW APHLDFAAAYAPIAAQLPTSWTHGDLHISNVFWKGLAPSQFIDFGLADRNPSVYDLALII ERNAFEWTRIVDGDEEAVHRDITLALIDGYEEVRPLSPLERRGLLALMPLIQAESGLNWI EYQYGVTRSMPGADWCLDVFFGEHTRWFTRPGGRDYLAWLDDAISHH >gi|292820350|gb|ACYT02000068.1| GENE 12 12614 - 13642 826 342 aa, chain + ## HITS:1 COG:mll1755 KEGG:ns NR:ns ## COG: mll1755 COG0715 # Protein_GI_number: 13471703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Mesorhizobium loti # 10 323 9 319 338 198 37.0 2e-50 MRRPLAALTALLPACALALASCAGNASTPQSSPQRQSVSVVLDWTPNTNHSGVYLAMARG YYEQEGIDVDILPYSEAGPASVLLGGGADFAFEGAYSVISGRARGDEMTMVFNLQQQSSQ GIAVRADNTDITRPADLDGKLFATWGAAEGVTKVQTMIHNDGGQGNVETALLGTSAYAAV YNGTADYAEGLTTWEGIEAELAGTPLKWFMPADYGVETTPAELGLVTTPAYLRDHADLAK RFIRATQRGYKDAIADPSAAVDALISTNPDAAIDRELASRSQELLSSKYWQDSSGSVGHG DPARWQGYIDYLLAQGLLEDASGAPASAPLSGADMVSNDLLE >gi|292820350|gb|ACYT02000068.1| GENE 13 13626 - 15242 777 538 aa, chain + ## HITS:1 COG:MA0063 KEGG:ns NR:ns ## COG: MA0063 COG1116 # Protein_GI_number: 20088962 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Methanosarcina acetivorans str.C2A # 271 509 7 253 268 170 37.0 7e-42 MTSSNSPTPVAARVRDNATRAAWACVSLSVVVVVWQLAHHASGLSQRILPAPTTILASAA ASWPSLSAAAWATGVEGIAGMIAGIAVGIAIAFTTSLWPRLTHVAMPILVVSQTVPLVAV APLMVIWMGFTMASKIVVVAVFTAFPVALALLRGLGRVPTSLTDPMGVAGASRIWILLHA RLPWAHTHLFSGIRIAATYAFASAATAEFMGAKRGLGVFLLSAQSSFRTDLVFAGAGTLV VMTIILYAIVAAAEALTSRRSLPGPWRRAPGRQQFAPGRIEMTSVSKTYRSSQGGVRALD GADLIVEEGSIAAVVGPSGCGKSTLIRIAAGLERADSATGRGKASDSASCALMPQSDSLA PWLSVRDNVALPLVLAGASKRDALTRADATLDSLGLGSFASHRPDELSGGMRARVAFART LLTPASAMLLDEPFGALDALTRAQVCDWLADLLHKHPWTTVIVTHDILEAVQLADTVHVM SARPGHITDSIRIDLPHPRGRGTRRLERFHALCARVEDALTTNNRRAQHEGTPCQSHE >gi|292820350|gb|ACYT02000068.1| GENE 14 15224 - 16138 895 304 aa, chain + ## HITS:1 COG:TM0484 KEGG:ns NR:ns ## COG: TM0484 COG0715 # Protein_GI_number: 15643250 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Thermotoga maritima # 6 304 24 316 316 81 24.0 2e-15 MPVTRVMLEYVHPWPNHAGLFLARRNGGFARAGLDVDLISDGYDRGGAPEVLARGEYDIA SLRLGHVLQSRSTGTPFVAVATLNQRQLGSVITTPETGIARFADLEGKTVAVPPVARLIH EVREAVAADGADPALVRFADPGNWEPDVRSVEQGLYDAVMNVRAWEPFQGNTPLDEVVVL EFDSVGVAPHHSYFLSVRQDTLDRNPDFVRSFLAAAANGYREAMEDEDGAVEAMSWPMCH VRPDVLRASLRAIRDSWFTPEGRWGEIQEDLVTSYTTWMDEGGWLEDGSRIEDLEGAWTN DFLP >gi|292820350|gb|ACYT02000068.1| GENE 15 16363 - 17391 600 342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 11 325 17 350 537 235 40 1e-61 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTVMAM DEDEDGNPIGEFDDTPKNFGRIAQSTARSVIMQRLRDADDQRVFGDFAGREGQIITGTVQ APRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIRAYVVGVERTERGPRITLSRTHP NLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAATREGINAKGACIGPMGARVRSV MAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHSVDNRTATAIVPDFQLSLAIGKE GQNARLAARLTNYHIDIHADTETGDDAIASRVSTPDDVTSRS >gi|292820350|gb|ACYT02000068.1| GENE 16 17920 - 18280 438 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192172|ref|ZP_06609384.1| ## NR: gi|293192172|ref|ZP_06609384.1| translation initiation factor IF-2 [Actinomyces odontolyticus F0309] # 1 120 21 140 141 84 100.0 2e-15 MGHLKEAGEFVKSSSSSLEPPVVRQMREKFATAPKTKKADAKPAAKAPKPSAAKPAAKKP GAPKAEAADAAPKAAAPKGDAPKPGAPKPRTKKADAATKPGTRKSAEGGAPKPAPRRADG Prediction of potential genes in microbial genomes Time: Tue May 17 07:02:50 2011 Seq name: gi|292820331|gb|ACYT02000069.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.3, whole genome shotgun sequence Length of sequence - 21452 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 3, operones - 3 average op.length - 6.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 32/0.000 + CDS 3 - 1940 2798 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) + Term 1955 - 1999 13.2 2 1 Op 2 26/0.000 + CDS 2039 - 2491 683 ## COG0858 Ribosome-binding factor A 3 1 Op 3 12/0.000 + CDS 2497 - 3549 895 ## COG0130 Pseudouridine synthase 4 1 Op 4 9/0.000 + CDS 3560 - 4549 387 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 + Prom 4613 - 4672 1.5 5 1 Op 5 26/0.000 + CDS 4790 - 5059 367 ## PROTEIN SUPPORTED gi|227429968|ref|ZP_03913007.1| SSU ribosomal protein S15P + Term 5067 - 5110 9.0 6 1 Op 6 4/0.000 + CDS 5244 - 7589 1321 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase + Term 7611 - 7668 23.1 7 1 Op 7 4/0.000 + CDS 5244 - 7589 166 ## PROTEIN SUPPORTED gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 + Term 7611 - 7668 23.1 + Prom 7620 - 7679 1.6 8 2 Op 1 . + CDS 7723 - 9027 1473 ## COG0612 Predicted Zn-dependent peptidases 9 2 Op 2 . + CDS 9127 - 9867 1098 ## COG0289 Dihydrodipicolinate reductase 10 2 Op 3 . + CDS 9864 - 10406 518 ## Bcav_2469 GCN5-related protein N-acetyltransferase 11 2 Op 4 . + CDS 10502 - 11407 986 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Prom 11473 - 11532 5.8 12 3 Op 1 . + CDS 11574 - 11990 428 ## gi|154509084|ref|ZP_02044726.1| hypothetical protein ACTODO_01601 13 3 Op 2 . + CDS 12004 - 12885 896 ## GYMC10_3432 hypothetical protein 14 3 Op 3 10/0.000 + CDS 12882 - 14072 986 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 15 3 Op 4 36/0.000 + CDS 14100 - 15308 1275 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 16 3 Op 5 . + CDS 15310 - 15987 265 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 17 3 Op 6 . + CDS 16037 - 17776 2062 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 18 3 Op 7 . + CDS 17846 - 18793 909 ## COG0524 Sugar kinases, ribokinase family 19 3 Op 8 . + CDS 18851 - 21452 3037 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins Predicted protein(s) >gi|292820331|gb|ACYT02000069.1| GENE 1 3 - 1940 2798 645 aa, chain + ## HITS:1 COG:ML1556 KEGG:ns NR:ns ## COG: ML1556 COG0532 # Protein_GI_number: 15827818 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Mycobacterium leprae # 6 644 289 923 924 764 66.0 0 RGSTPGAFGRGGGRSQRGRKSKRAKRQEYEQQNAPVIGGVSIPRGGGAQIRIRQGASLAD LAEKIDVNPAALVTVLFALGEMATATQSLDQDTFEALGAELGYDVKVVSPEDEDRELLES FDIDLEAEELDDAENMVPRPPVVTVMGHVDHGKTKLLDAIRHTDVVDTEHGGITQHIGAY QVTVKAEDGTVRPITFIDTPGHEAFTAMRARGAQVTDIAILVVAADDGVMPQTVEAINHA QAAGVPIVVAVNKVDKDTANPEKIRSQLTEYGLVAEEYGGDVMFVNISAKQRKGIRELLE AVLLTADAALTLEANPNTDARGVAIEANLDKGRGAVATMLVQRGTLHVGDSLVVGSSYGR VRAMFDDSGNDVSEAGPSTPVAVLGLTSVPRAGDSFLVAPDDRTARQIADKREAAERQAL LAKRRKRVSLEDFDKVLAEGEVDTLNLVIKGDVSGAVEALEDSLLRIDVGDEVALRIIHR GVGAITQNDVNLATVDNAVIIGFNVRPAERVAEMADAEGVEIKYYNVIYSAIDDIEAALK GMLKPIYEEVQLGTAEIRQVFRSGKFGNIAGSIVRSGTIKRGTKARLVRDGVVVADNLEI VSLRREKDDVTEVREGYECGITLGHKDIAEGDIIETWEMREKARD >gi|292820331|gb|ACYT02000069.1| GENE 2 2039 - 2491 683 150 aa, chain + ## HITS:1 COG:Cgl1938 KEGG:ns NR:ns ## COG: Cgl1938 COG0858 # Protein_GI_number: 19553188 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Corynebacterium glutamicum # 1 145 1 149 149 103 45.0 1e-22 MADEARVRKVQERILQTVASMIGRHVKDPRLELVTITDVRVTGDLQHASIFYTVLGDDEQ REKAARAFASAQGLFRSRVGKALGLRLTPTLEFILDALPESAAALEDALAKAKAKDEAIA AASAGATYAGDADPYRHDDEEDEADAKDWA >gi|292820331|gb|ACYT02000069.1| GENE 3 2497 - 3549 895 350 aa, chain + ## HITS:1 COG:ML1546 KEGG:ns NR:ns ## COG: ML1546 COG0130 # Protein_GI_number: 15827813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Mycobacterium leprae # 10 350 12 301 320 234 46.0 3e-61 MARRPDNPRPGLLVIDKPQGLTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVIGIGKA TKLLTWVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAAFAPLRGDIMQ VPSTVSAIKVNGKRAYALARAGDDVELAARPVRISRLEVLAPPRPVECTLEEADADNAPD EQVPSGPVRVVDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVHLDTAIT LEELSAAVEAATPEGEPDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRSRS ELAQWAVEAGYCPKSAPEEEPAPIAAVAPDGTVLGLLRIDAARLRTVLVF >gi|292820331|gb|ACYT02000069.1| GENE 4 3560 - 4549 387 329 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 18 308 20 307 317 153 34 8e-37 MNVWYSLSDIPGNEASVVTIGNFDGMHNGHKKVISTCIERAHKLGVDAVAITFDPHPIQV HKPEVGLQLISPLRDRLDAMAAAGLDATLVAHYDASVYSLEADEFVYEYLVERCGAREVV VGEDFRFGRGNAGTIDTLRELGRRYGFNVITVTDIEAPEGRRWSSSWVRELLAAGDVSGA ARVLGHLHRIRGTVCHGFKRGRTLGFPTANLSEDVEGVIPADGVYAGWVVRAVPGTQSAE FLPAAISVGTNPQFNGVERTVEAHVLGRSDLNLYGERIAVTFVSRIRPMLSFDSLDELLT QMDDDLRQTASVLGIGVAGRVDPDSVTAR >gi|292820331|gb|ACYT02000069.1| GENE 5 4790 - 5059 367 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227429968|ref|ZP_03913007.1| SSU ribosomal protein S15P [Xylanimonas cellulosilytica DSM 15894] # 1 89 1 89 89 145 80 2e-34 MPLSKDVKDQIIAEYATHEGDTGSPEVQIALLTRRIKDLTEHFKTHTHDHHSRRGLLLLV GRRRRLLGYLADIDIERYRSLIERLGLRR >gi|292820331|gb|ACYT02000069.1| GENE 6 5244 - 7589 1321 781 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 19 746 11 710 714 513 43 1e-145 MMEGSDIIAAEAIIDNGRFGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPK DQFDFFPLTVDVEERQYAAGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEV QVVETVLTIDPDDAYDVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELE RSVFNIVVAGRIVTKEDGSEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKP FIKVLCEAQLKVAEKASKETVEFPLFLDYTDEEYAAVEDYAAEKVAQALLTEGKLARDEA VDAVKEEMLEALAERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAE VEVLPRVHGSALFQRGETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEV GRVGSPKRREIGHGDLAERALVPVLPSREEFPYAIRQVSETMGSNGSSSMGSVCASTLSL LQAGVPLRAPVAGIAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQ LDTKLDGIDSQVLRAALAQARDARLAILDLINQAIDGPDEMSPNAPRIITVKVPVDKIGE VIGPKGKMINQIQDETGADVTIEDDGTVYIASSDGASADAARTMVNQIANPQMPEVGERF VGTVVKTTSFGAFVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGD RGKLSLHAVIDGEAGELEAAEGEQTEQRRERRDRSERRERRPRTRTRRRRDDEREDGASE E >gi|292820331|gb|ACYT02000069.1| GENE 7 5244 - 7589 166 781 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|191638372|ref|YP_001987538.1| 30S ribosomal protein S1 [Lactobacillus casei BL23] # 657 771 288 397 439 68 37 3e-11 MMEGSDIIAAEAIIDNGRFGKRTVRFETGRLAKQAAGSALAYLDDSTTVLSATTVGKNPK DQFDFFPLTVDVEERQYAAGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEV QVVETVLTIDPDDAYDVLAINAASMSTQIAGLPFTGPIGGTRLALIDDQWVAFPRWSELE RSVFNIVVAGRIVTKEDGSEDVAIMMVEAGGGKNQWELIQAGATAPTEDVVADGLEAAKP FIKVLCEAQLKVAEKASKETVEFPLFLDYTDEEYAAVEDYAAEKVAQALLTEGKLARDEA VDAVKEEMLEALAERFPESEKALKAAFRSLEKATIRNRTLREEIRMDGRTPRQIRSLSAE VEVLPRVHGSALFQRGETQILGITTLAMLRMEQQIDNLSPVNAKRYMHQYNFAPFSTGEV GRVGSPKRREIGHGDLAERALVPVLPSREEFPYAIRQVSETMGSNGSSSMGSVCASTLSL LQAGVPLRAPVAGIAMGLMTGEVDGQFKAVTLTDILGAEDGFGDMDFKVAGTRDFITALQ LDTKLDGIDSQVLRAALAQARDARLAILDLINQAIDGPDEMSPNAPRIITVKVPVDKIGE VIGPKGKMINQIQDETGADVTIEDDGTVYIASSDGASADAARTMVNQIANPQMPEVGERF VGTVVKTTSFGAFVSLTPGKDGLLHISQVRRLVGGKRIDSVDDVLQVGQQVEVEIAEIGD RGKLSLHAVIDGEAGELEAAEGEQTEQRRERRDRSERRERRPRTRTRRRRDDEREDGASE E >gi|292820331|gb|ACYT02000069.1| GENE 8 7723 - 9027 1473 434 aa, chain + ## HITS:1 COG:ML0855 KEGG:ns NR:ns ## COG: ML0855 COG0612 # Protein_GI_number: 15827381 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Mycobacterium leprae # 24 432 3 408 424 313 43.0 3e-85 MTPKPLPLDEARLSIEDGDTCIDRTILGAGTRVLTQEIPATKSAGVSLWVPVGSRDEGPR TAGSTHFLEHLLFKGTNKRSALDIAVAFDSVGGESNAETAREHTAYWARVRDADLDMAIE TLTDMVTDSRLDEEDFSLERGVILDELAMGEDSPTDTVHDTFQLAVHGDRPIGRPVGGTA QAIREVERADVWEHYQAHYCPSSLIVAAAGNVDHESVCERVQAALEGSPWDAGSAASPWP RRSTTVTPIADHDKDITRRRDVTQAHVIIGCEGLSATDPAGPTMSVLLSVLGGSMSSRLF QEVREKRGLAYTTYAFDVAYSDTGTFGMYAGCSPDKVGEVEAIMRAQLEDLAADGPTEEE MTRVRGQVRGGVVLGLEDNWSRMMRLGRSEIIGRYRPIDESLAEFDAVQAGDVRALAASL IAKLDCRALVLPAQ >gi|292820331|gb|ACYT02000069.1| GENE 9 9127 - 9867 1098 246 aa, chain + ## HITS:1 COG:Cgl1927 KEGG:ns NR:ns ## COG: Cgl1927 COG0289 # Protein_GI_number: 19553177 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Corynebacterium glutamicum # 2 246 3 248 248 226 51.0 3e-59 MIRVAVTGAKGRMGSTVVQAVTDAPDMEVVALFDAGDEITPQSVNGAQVAVDFSIPSVTE SNVHALLDAGVDVVVGTTGWTEESYARVREHAEASGRAVLIAPNFAMGAVLAMKFAALAA PYFESAEVIEMHHPAKVDAPSGTAVATARGIAKARAEAGLGEMPDATETDELGSRGGRVD GIPVHAVRLRGLTASEEILLGNVGEQLVIRTDSFDRVSFMPGVLLGVRRVIGRTGLTIGL DQVMGL >gi|292820331|gb|ACYT02000069.1| GENE 10 9864 - 10406 518 180 aa, chain + ## HITS:1 COG:no KEGG:Bcav_2469 NR:ns ## KEGG: Bcav_2469 # Name: not_defined # Def: GCN5-related protein N-acetyltransferase # Organism: B.cavernae # Pathway: not_defined # 8 166 9 167 183 76 39.0 4e-13 MSQSVGPDRSVRPAQSGDARVIARLQYEAWRSLMGQNALDAQGITEEALAAQWEATLASP RPGGTALLVALHGNTIVGFALAGPDEAGVSSAPDAESGEAAVAATQVYELTVDKNFRRSG HASRLLSAVADLTSGQLRAWVGVDDEERQRFFTSAGFAPSGAVRVLGDGPTQHMWWAERD >gi|292820331|gb|ACYT02000069.1| GENE 11 10502 - 11407 986 301 aa, chain + ## HITS:1 COG:MT2823 KEGG:ns NR:ns ## COG: MT2823 COG0329 # Protein_GI_number: 15842291 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Mycobacterium tuberculosis CDC1551 # 9 301 9 299 300 252 47.0 6e-67 MERMSNIPARRFGSLAAAMVTPMTDTGEIDLPSAQRLAIKLVDEGCDTILLSGTTGESPT THQPEKNDLTEAVREAVGDRAFILCGACSNDTAHAVRIGEGAQEHGADGILIVSPYYNRP SQEGLRAHVRAVTDATDLPVMLYDIPGRTGIAFSDATLDILAQHPRILGVKDATGDVETG VERMHRTGLEYYSGDDGLNFAWMTGGASGFISVVAHVASAQYRCMIELLDSDQVWEAREL SYSLRPLVHAIMGGGQGAVMAKYALWLQGVIDSPAVRLPMVGISDDEVSALRRALCTAGL L >gi|292820331|gb|ACYT02000069.1| GENE 12 11574 - 11990 428 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509084|ref|ZP_02044726.1| ## NR: gi|154509084|ref|ZP_02044726.1| hypothetical protein ACTODO_01601 [Actinomyces odontolyticus ATCC 17982] # 1 138 4 141 141 214 99.0 1e-54 MAKKDVIIPLVPAALSALLLAGGVTVFSACEQRADGSWMHCHQCQNMVAGSAVGLIALYG ASSLVKNKPARLALLALAVIASVVVFFIPGGICPLCAMKTMRCHTVFQPFVRIMSVLVAG SGIGALVASWKKDAKPSA >gi|292820331|gb|ACYT02000069.1| GENE 13 12004 - 12885 896 293 aa, chain + ## HITS:1 COG:no KEGG:GYMC10_3432 NR:ns ## KEGG: GYMC10_3432 # Name: not_defined # Def: hypothetical protein # Organism: Geobacillus_Y412MC10 # Pathway: not_defined # 85 281 11 223 228 90 30.0 5e-17 MGDNGGVRAQGRSTTVRIGAVLLALSLVAVLAIVVRNAVRYREAVALDEAGDAQGAYVLF HALGGYSDAAQRAQALVEADPALPYRSVSKGDTVSFGSYEQDGNTSNGPESITWIVLDKI DGQLLLLSADVLEARQYHHVPFEEVTWENSDLRAWMNGDFYDGAFTPAQRGLIETVHNEN ADQSITGASGGAATDDRVFALSETESVIYLNTPAARSDIGAAPASVHAAAGPLSVSEDGT ADWWLRSPGTYGFATQFVDATGVPSLSGANVDLQYGVRPALWINVEGVGEGSR >gi|292820331|gb|ACYT02000069.1| GENE 14 12882 - 14072 986 396 aa, chain + ## HITS:1 COG:FN1349 KEGG:ns NR:ns ## COG: FN1349 COG0577 # Protein_GI_number: 19704684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 344 1 347 401 105 24.0 2e-22 MSNALSLRRVPLLTIRAHPVRSLIIAVLALAQAACVFGGLILMGAMRAELTLAERRLGAD LVVYPTTCLNQVEKKRLLMLGTPVGCHQPRSALARMSSNEDIAALSYQLYVSETLVDGST RWIVGFEPETDFALSPWIAEGEGTSLPRGSVLVGSAVPGADGQTLSVFGRERPIGAHLLT TGSELDDAVFVSMDTLSDMMADARAAGEDNDASLDPRTDYSAALVRASDSDAIESVTNWI NLYVRKVSAVRAADALVGAASGIRAHRGVAIGVLGATWLVLLGALVIVQVSLMNERMQEL AVWRSIGASRSIMSRVMLSESALLHVAGALAGVCLAALTVPFVGDGSLVETLASPATSLP LAGLSIVAVTCVGVAGTRLALARVSRAATGNKSVLV >gi|292820331|gb|ACYT02000069.1| GENE 15 14100 - 15308 1275 402 aa, chain + ## HITS:1 COG:FN1349 KEGG:ns NR:ns ## COG: FN1349 COG0577 # Protein_GI_number: 19704684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 11 400 14 399 401 179 29.0 7e-45 MLSLSRLPWMNLRGYPVRTGTLVFFSMLMTMTIFGGTLVVQGIEHGLRTTQSRLGADIMV TPDEADTDFDAQTFLVNAEPSYFYMDASTREAVAAVDGVEAASSQLFLASARASCCSGRY QVIAYDPATDFTIQPWMNDAVGQTQLGENEVIVGANVLANDPENFQLFDNTLRVVGQFDP TGSTLDNAVYMNFETAKKVIDSSLRKGLNKYSTLETDRIISSVMVKVAPGYDAEAVAAQI REQVSGVSVATSTKLVSGIAQSLDATSRTVTTLIAVAWGAGLLMITLMFVLMIVERRREF ATLIAAGAHRRLISRIIIREALAVNALGGVGGIVVSGVLLVSFSGLVRQSLGGGFLVPSL PTLALLALGALASVGLVALVSSWIALRYVTTMDASLALKEGE >gi|292820331|gb|ACYT02000069.1| GENE 16 15310 - 15987 265 225 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 2 219 4 217 223 106 31 1e-22 MIIEATGLTKEFARARGGKRLFTAVHPLDIGLEERQLTVVSGHSGSGKSTLANMLAGILT PTAGHVRLDGTDLYSLRDEELSRLRNERIGLVPQGHTALRALTVLDNVLLPSILYTKDEA PADRARELLVAVGLGDLTDAAPTELSGGELRRMAIARALLMDPAIVVADEPTAGLDSANA TAVLTLLRDAADRGTAVLVVSHEAEAQRFADRSYVMEDGHLRASE >gi|292820331|gb|ACYT02000069.1| GENE 17 16037 - 17776 2062 579 aa, chain + ## HITS:1 COG:MT2822 KEGG:ns NR:ns ## COG: MT2822 COG0595 # Protein_GI_number: 15842290 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Mycobacterium tuberculosis CDC1551 # 23 578 4 557 558 541 50.0 1e-153 MSPDAGKAVSTWQTGIMKSLYENLSEPAPLEDGALRVIPLGGLGEVGRNMNVLEYRGKLL VVDCGVLFPEETQPGVDLILPDFSWIEDRMDDVVGLILTHGHEDHIGAVPYLLKLRGDIP IYGSDLTLAFVAPKLREHRLPDPGLNVVAEGDRLTVGPFDLEFVSVTHSIPDALAVFVRT DAGNVLITGDFKMDQLPLDRRLTDLRAFARMGEEGVDLFMVDSTNALVPGFITPEREIGP VLDQVFGEATGQIVVASFASHVHRVQQVINAAAHHGRRVAFVGRSMERNMRIAEEKGYLS IPEGIIVDLKGIGELPPSQRVYMATGSQGEPMAALSRMSVGSHRTVTIEPGDMVVLASSL IPGNENSVYRVINDLTRLGARVVSKENAKVHVSGHASAGELIYCYNIVQPKNVMPIHGEV RHLVGNGQLAVKTGIDPQKVVLAEDGVTVDLKDGVARVSGIVPCEYVYVDGRSIGEISED ELETRRTLGSEGFISIFAVVERDSGMVLAGPEIRAIGMAEDDSVFEEILPDVTQALKDAA APGGQDPYVLQQAMRRVIGRWVARRLRRRPMIVPVVTEQ >gi|292820331|gb|ACYT02000069.1| GENE 18 17846 - 18793 909 315 aa, chain + ## HITS:1 COG:mll1743 KEGG:ns NR:ns ## COG: mll1743 COG0524 # Protein_GI_number: 13471693 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Mesorhizobium loti # 1 311 1 312 325 97 27.0 4e-20 MSGRFISTHSVALVLPMHIAYVPERGGSVHADAASSRPGGGFTTLCAAAAMGVPTAAASP LGTGPNSFAVRQQLVEAGVEVLTPELVGDIGVVIQLIVEDGSMRSVVTAGVESEPSRGAL ASIELREGDVVHVAASDMTSAHAASELSEWAASLPPFVTLVVSVSPAVAQVPVEAWEVIF PRADVVTMSSWEAATLAGILDANRHGSTIRTYIRPDVATVRRVGERGCELQKVADAPVIS IPAFQSRIADTAGVGDTHIGEMCAGLAMGYDLETACLMANAGAALAISHESALPVPTRDQ VENVLETGVVTNILR >gi|292820331|gb|ACYT02000069.1| GENE 19 18851 - 21452 3037 867 aa, chain + ## HITS:1 COG:ML0977 KEGG:ns NR:ns ## COG: ML0977 COG1674 # Protein_GI_number: 15827463 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Mycobacterium leprae # 66 855 134 880 886 619 48.0 1e-177 MAQSSPRSSSGKAPARPRAKGGSNKSAQAPQPEATQPGFLARFFSALGRAGVGAVRAWKA TDSQVKRDAAAFVAVAAAIVIALREWFQVSGEAGDAIHHASAGLFGIFSVVLPLVLIALA VELVSARSGRSALPHHVAGGIGITAALTGLVHISRGNPAMGTEPGIEAAGGLLGWFVARP LALLLSGWGAGALMILLLAYSILLATRTAVAEVPARLRDLAAHLSGERPEGEAGTADQAG GDPAKEARRHARKGLAAGDDAFLDEYDGDESFRKATDTESVGDTRLLESGAIAAPAPTPT PAPRPRATTPDAPTEMLTQMRPAVAAVPVQVPAHVPEPEPEPEDAPAPPPITDEPEGAFQ PNLDDSISYTLPSEDLLVSGPPHMTRSSVNDQVVAALGQVFADFNVDARVTGFSRGPTVT RYEVVLGAGVKVDKLTNLSKNIAYAVASADVRILAPIPGKSAIGIEIPNADRENVALGDV LRSAAARRNQHPLVVGVGKDVEGGYVVTNLAKTPHMLVAGQTGSGKSSFVNSMITSIMMR ATPQQVRMILVDPKRVELTIYEGIPHLISPIITDAKKAAEALEWVVKEMDARYDDLSDYG FKHIDDFNKAVAAGQVQAKPGLERTLHPYPYLLVVVDELADLMMVAPRDVEASIQRITQL ARAAGIHLVLATQRPSVDVVTGLIKANIPSRLAFATSSLTDSRTILDQPGAEKLIGQGDA LYLPAGASKPMRVQGAWVSESEIHQIVSHVKSQMETHYRDDVVPEKKEAKVAEDIGDDLE DLLQAAELVVSTQLGSTSMLQRKLRVGFARAGRLMDLLESREIVGPSEGSKARQVLVTPE QLPEVLAMLRGESAGIAEPEPEPAPAP Prediction of potential genes in microbial genomes Time: Tue May 17 07:03:49 2011 Seq name: gi|292820206|gb|ACYT02000070.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.4, whole genome shotgun sequence Length of sequence - 128966 bp Number of predicted genes - 115, with homology - 114 Number of transcription units - 42, operones - 27 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 250 173 ## gi|154509077|ref|ZP_02044719.1| hypothetical protein ACTODO_01594 2 1 Op 2 2/0.000 + CDS 268 - 984 243 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 3 1 Op 3 . + CDS 1155 - 1469 448 ## COG1396 Predicted transcriptional regulators 4 1 Op 4 . + CDS 1473 - 1697 189 ## gi|293192295|ref|ZP_06609406.1| conserved hypothetical protein + Term 1709 - 1781 9.8 5 2 Op 1 14/0.000 + CDS 1946 - 3037 1842 ## COG0468 RecA/RadA recombinase 6 2 Op 2 . + CDS 3041 - 3667 440 ## COG2137 Uncharacterized protein conserved in bacteria 7 2 Op 3 . + CDS 3655 - 4167 266 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 8 2 Op 4 . + CDS 4179 - 5717 455 ## PROTEIN SUPPORTED gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase + Term 5776 - 5824 2.2 9 3 Op 1 . - CDS 6101 - 6631 751 ## gi|293192301|ref|ZP_06609412.1| hypothetical protein HMPREF0970_01757 10 3 Op 2 . - CDS 6624 - 7070 729 ## gi|293192302|ref|ZP_06609413.1| conserved hypothetical protein 11 4 Op 1 4/0.000 + CDS 7131 - 8120 1006 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 12 4 Op 2 . + CDS 8171 - 9091 930 ## COG0253 Diaminopimelate epimerase 13 5 Tu 1 . - CDS 9161 - 9877 666 ## COG2813 16S RNA G1207 methylase RsmC 14 6 Op 1 . + CDS 9861 - 11393 613 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 15 6 Op 2 . + CDS 11480 - 13330 1935 ## COG1199 Rad3-related DNA helicases 16 6 Op 3 . + CDS 13433 - 14422 1367 ## COG0039 Malate/lactate dehydrogenases + Term 14438 - 14482 17.6 - Term 14426 - 14470 17.6 17 7 Tu 1 . - CDS 14483 - 15163 672 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 18 8 Op 1 . + CDS 15162 - 15353 67 ## gi|154509061|ref|ZP_02044703.1| hypothetical protein ACTODO_01578 19 8 Op 2 . + CDS 15350 - 15814 426 ## gi|293192311|ref|ZP_06609422.1| putative LysM domain protein 20 8 Op 3 . + CDS 15871 - 16458 583 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 21 9 Op 1 1/0.083 - CDS 16529 - 18436 1913 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 22 9 Op 2 . - CDS 18522 - 19763 1651 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 23 9 Op 3 . - CDS 19787 - 22063 2204 ## COG3973 Superfamily I DNA and RNA helicases 24 10 Tu 1 . + CDS 22237 - 23313 1090 ## HMPREF0573_11570 hypothetical protein - Term 23265 - 23289 -0.3 25 11 Tu 1 . - CDS 23372 - 24193 448 ## COG0421 Spermidine synthase 26 12 Op 1 . + CDS 24241 - 25584 1093 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 27 12 Op 2 . + CDS 25652 - 26068 528 ## Achl_1561 membrane protein + Term 26090 - 26134 14.2 - Term 26078 - 26122 8.8 28 13 Tu 1 . - CDS 26281 - 26382 69 ## + Prom 26304 - 26363 1.9 29 14 Op 1 29/0.000 + CDS 26592 - 27023 444 ## COG2001 Uncharacterized protein conserved in bacteria 30 14 Op 2 . + CDS 27135 - 28142 867 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 31 14 Op 3 . + CDS 28139 - 28531 472 ## gi|154509048|ref|ZP_02044690.1| hypothetical protein ACTODO_01565 32 14 Op 4 . + CDS 28549 - 30282 1729 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 33 14 Op 5 28/0.000 + CDS 30300 - 31697 1442 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 34 14 Op 6 28/0.000 + CDS 31694 - 32779 1613 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 35 14 Op 7 25/0.000 + CDS 32776 - 34221 1373 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 36 14 Op 8 31/0.000 + CDS 34169 - 35464 1473 ## COG0772 Bacterial cell division membrane protein 37 14 Op 9 26/0.000 + CDS 35537 - 36661 1022 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 38 14 Op 10 5/0.000 + CDS 36654 - 38045 1258 ## COG0773 UDP-N-acetylmuramate-alanine ligase 39 14 Op 11 6/0.000 + CDS 38105 - 38992 191 ## PROTEIN SUPPORTED gi|88856514|ref|ZP_01131171.1| 50S ribosomal protein L6 40 14 Op 12 5/0.000 + CDS 39120 - 40373 1680 ## COG0206 Cell division GTPase 41 14 Op 13 . + CDS 40373 - 41131 396 ## COG1496 Uncharacterized conserved protein 42 15 Op 1 . + CDS 41312 - 41764 496 ## COG1799 Uncharacterized protein conserved in bacteria 43 15 Op 2 . + CDS 41773 - 42084 367 ## HMPREF0573_11863 transmembrane protein + Term 42119 - 42153 0.6 + Prom 42117 - 42176 3.5 44 15 Op 3 . + CDS 42257 - 42829 936 ## COG3599 Cell division initiation protein + Term 42843 - 42894 15.5 45 16 Op 1 15/0.000 + CDS 42900 - 43403 701 ## COG0597 Lipoprotein signal peptidase 46 16 Op 2 2/0.000 + CDS 43400 - 44317 945 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 47 16 Op 3 . + CDS 44447 - 47989 5082 ## COG0587 DNA polymerase III, alpha subunit 48 17 Tu 1 . - CDS 48044 - 48274 331 ## COG2501 Uncharacterized conserved protein - Prom 48344 - 48403 3.3 + Prom 48283 - 48342 2.3 49 18 Op 1 . + CDS 48367 - 49014 743 ## HMPREF0573_11850 hypothetical protein 50 18 Op 2 . + CDS 49011 - 49736 792 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 51 18 Op 3 . + CDS 49733 - 50500 787 ## gi|293192344|ref|ZP_06609455.1| conserved hypothetical protein + Term 50732 - 50772 10.1 52 19 Op 1 . + CDS 50852 - 51439 723 ## COG0290 Translation initiation factor 3 (IF-3) 53 19 Op 2 . + CDS 51476 - 51670 261 ## PROTEIN SUPPORTED gi|227383679|ref|ZP_03867101.1| LSU ribosomal protein L35P 54 19 Op 3 4/0.000 + CDS 51698 - 52078 535 ## PROTEIN SUPPORTED gi|227875290|ref|ZP_03993432.1| ribosomal protein L20 55 19 Op 4 . + CDS 52082 - 52930 185 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 56 19 Op 5 . + CDS 52977 - 53972 604 ## COG0611 Thiamine monophosphate kinase 57 19 Op 6 . + CDS 54053 - 54244 128 ## gi|154509020|ref|ZP_02044662.1| hypothetical protein ACTODO_01537 58 20 Tu 1 . + CDS 54345 - 55001 578 ## gi|293192351|ref|ZP_06609462.1| hypothetical protein HMPREF0970_01807 + Term 55019 - 55063 -0.9 + Prom 55037 - 55096 2.0 59 21 Tu 1 . + CDS 55171 - 56328 1161 ## Bfae_02760 hypothetical protein + Prom 56369 - 56428 2.4 60 22 Op 1 6/0.000 + CDS 56465 - 57112 650 ## COG1309 Transcriptional regulator 61 22 Op 2 . + CDS 57381 - 60944 2929 ## COG1012 NAD-dependent aldehyde dehydrogenases - Term 61062 - 61111 11.3 62 23 Tu 1 . - CDS 61128 - 61319 296 ## PROTEIN SUPPORTED gi|227495859|ref|ZP_03926170.1| 50S ribosomal protein L28 - Prom 61406 - 61465 2.8 63 24 Op 1 . + CDS 61521 - 63134 1104 ## gi|293192358|ref|ZP_06609469.1| hypothetical protein HMPREF0970_01814 64 24 Op 2 1/0.083 + CDS 63122 - 65269 1777 ## COG1200 RecG-like helicase 65 24 Op 3 14/0.000 + CDS 65293 - 65931 193 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 66 24 Op 4 3/0.000 + CDS 65928 - 66398 256 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 67 24 Op 5 4/0.000 + CDS 66402 - 67139 1047 ## COG3599 Cell division initiation protein 68 24 Op 6 4/0.000 + CDS 67132 - 67698 641 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 69 24 Op 7 . + CDS 67698 - 68420 1059 ## COG0571 dsRNA-specific ribonuclease 70 24 Op 8 . + CDS 68466 - 69113 803 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 69147 - 69191 7.1 + Prom 69159 - 69218 2.3 71 25 Tu 1 . + CDS 69369 - 72917 5354 ## COG5263 FOG: Glucan-binding domain (YG repeat) 72 26 Op 1 . - CDS 73024 - 74670 1591 ## COG2203 FOG: GAF domain 73 26 Op 2 8/0.000 - CDS 74667 - 76421 1545 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 74 26 Op 3 5/0.000 - CDS 76418 - 78094 1460 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components - Term 78150 - 78195 15.1 75 27 Op 1 31/0.000 - CDS 78210 - 79331 1676 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 76 27 Op 2 . - CDS 79346 - 80893 2443 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 77 28 Op 1 4/0.000 + CDS 81307 - 84066 2775 ## COG1530 Ribonucleases G and E + Term 84155 - 84198 1.1 + Prom 84138 - 84197 2.8 78 28 Op 2 32/0.000 + CDS 84229 - 84606 383 ## PROTEIN SUPPORTED gi|229244194|ref|ZP_04368313.1| LSU ribosomal protein L21P 79 28 Op 3 14/0.000 + CDS 84641 - 84898 371 ## PROTEIN SUPPORTED gi|50842315|ref|YP_055542.1| 50S ribosomal protein L27 + Term 84914 - 84950 10.1 80 29 Op 1 7/0.000 + CDS 84974 - 86497 2025 ## COG0536 Predicted GTPase 81 29 Op 2 22/0.000 + CDS 86494 - 87621 1006 ## COG0263 Glutamate 5-kinase 82 29 Op 3 6/0.000 + CDS 87686 - 88939 1163 ## COG0014 Gamma-glutamyl phosphate reductase 83 29 Op 4 14/0.000 + CDS 88936 - 89646 638 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 84 29 Op 5 6/0.000 + CDS 89660 - 90085 478 ## COG0799 Uncharacterized homolog of plant Iojap protein 85 29 Op 6 . + CDS 90082 - 90816 436 ## COG0406 Fructose-2,6-bisphosphatase + Term 91035 - 91072 6.2 + TRNA 90953 - 91025 82.4 # Ala GGC 0 0 86 30 Op 1 . + CDS 91292 - 93217 2108 ## NT01CX_2377 putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase + Term 93232 - 93275 15.4 + Prom 93297 - 93356 3.6 87 30 Op 2 . + CDS 93456 - 94625 1374 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 94663 - 94709 16.2 + Prom 95116 - 95175 4.2 88 31 Tu 1 . + CDS 95270 - 96034 1296 ## COG5263 FOG: Glucan-binding domain (YG repeat) + Term 96094 - 96141 10.1 - Term 96168 - 96207 12.8 89 32 Op 1 . - CDS 96228 - 98795 3769 ## COG0308 Aminopeptidase N 90 32 Op 2 . - CDS 98935 - 100956 2476 ## COG3590 Predicted metalloendopeptidase + Prom 101119 - 101178 2.5 91 33 Op 1 9/0.000 + CDS 101223 - 102809 1829 ## COG0578 Glycerol-3-phosphate dehydrogenase 92 33 Op 2 8/0.000 + CDS 102806 - 104056 1540 ## COG3075 Anaerobic glycerol-3-phosphate dehydrogenase 93 33 Op 3 . + CDS 104053 - 105336 1654 ## COG0247 Fe-S oxidoreductase + Term 105351 - 105398 11.5 94 33 Op 4 . + CDS 105594 - 106154 527 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity + Term 106179 - 106243 22.2 95 34 Tu 1 . - CDS 106236 - 106721 524 ## gi|293192393|ref|ZP_06609504.1| conserved hypothetical protein - Prom 106776 - 106835 1.8 + Prom 106779 - 106838 2.4 96 35 Tu 1 . + CDS 106921 - 107598 533 ## gi|293192394|ref|ZP_06609505.1| conserved hypothetical protein 97 36 Op 1 . - CDS 107640 - 108440 771 ## COG0730 Predicted permeases 98 36 Op 2 . - CDS 108444 - 109703 1265 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 99 36 Op 3 . - CDS 109700 - 110917 662 ## COG1940 Transcriptional regulator/sugar kinase 100 37 Op 1 1/0.083 - CDS 111074 - 112594 2069 ## COG3119 Arylsulfatase A and related enzymes 101 37 Op 2 . - CDS 112635 - 114083 2155 ## COG0477 Permeases of the major facilitator superfamily 102 38 Op 1 . - CDS 114218 - 115081 730 ## CYA_1336 hypothetical protein 103 38 Op 2 . - CDS 115078 - 116079 878 ## COG0701 Predicted permeases + Prom 116195 - 116254 1.6 104 39 Tu 1 . + CDS 116483 - 119758 4729 ## COG0060 Isoleucyl-tRNA synthetase + Term 119774 - 119818 16.1 105 40 Op 1 . - CDS 119841 - 120431 678 ## gi|154508969|ref|ZP_02044611.1| hypothetical protein ACTODO_01485 106 40 Op 2 . - CDS 120373 - 121083 622 ## gi|293192405|ref|ZP_06609516.1| conserved hypothetical protein 107 40 Op 3 . - CDS 121074 - 121721 535 ## gi|293192406|ref|ZP_06609517.1| conserved hypothetical protein 108 40 Op 4 . - CDS 121760 - 122170 483 ## gi|293192407|ref|ZP_06609518.1| hypothetical protein HMPREF0970_01864 109 40 Op 5 . - CDS 122253 - 122633 520 ## gi|154508965|ref|ZP_02044607.1| hypothetical protein ACTODO_01481 110 41 Tu 1 . + CDS 122842 - 124512 1901 ## COG0285 Folylpolyglutamate synthase + Term 124534 - 124572 8.3 111 42 Op 1 10/0.000 + CDS 124632 - 125624 1412 ## COG2376 Dihydroxyacetone kinase 112 42 Op 2 9/0.000 + CDS 125653 - 126294 755 ## COG2376 Dihydroxyacetone kinase 113 42 Op 3 . + CDS 126291 - 127049 686 ## COG3412 Uncharacterized protein conserved in bacteria 114 42 Op 4 . + CDS 127046 - 127516 725 ## COG0105 Nucleoside diphosphate kinase 115 42 Op 5 . + CDS 127537 - 128965 1347 ## COG1196 Chromosome segregation ATPases Predicted protein(s) >gi|292820206|gb|ACYT02000070.1| GENE 1 2 - 250 173 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509077|ref|ZP_02044719.1| ## NR: gi|154509077|ref|ZP_02044719.1| hypothetical protein ACTODO_01594 [Actinomyces odontolyticus ATCC 17982] # 34 82 903 951 951 95 100.0 1e-18 AAPEGAPSPASGATAGAAGEAPASSPADAAPASGYEMGTASAGDSRGSGVDPYSGHNFGG SSPDWVDEEPEDNEDAWQLTGR >gi|292820206|gb|ACYT02000070.1| GENE 2 268 - 984 243 238 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 9 203 471 669 904 98 33 2e-19 MSENVSRVQRGSKVPVVNLPNALTVLRLVLVPVFVVLGLQSASWTALWAAFVVFAVAAIT DRFDGKLARSWGQITDFGRIADPIADKALTLCGFALLSYQGYLPWWVTILIAVRELGITA MRAFFLRRGVVVSANQAGKLKTFMQMVALGTLLIPWAHFKHINDGNEWWVVLLIRLGQIF AGVALALTLYSGFMYVIDGVRLMRGASADEAVGDSRDNDAPEEPAPSRRGTAGQHLQS >gi|292820206|gb|ACYT02000070.1| GENE 3 1155 - 1469 448 104 aa, chain + ## HITS:1 COG:MT2816 KEGG:ns NR:ns ## COG: MT2816 COG1396 # Protein_GI_number: 15842285 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 10 82 4 76 112 79 67.0 1e-15 MEKTLSETPLLRSELGDVLRGIRQRQGRTLREVSSEAQVSLGYLSEVERGQKEASSELLE AITSALRVPLWFVLREVSERMAIIDGAVIPDAVPDDIVPVTLIS >gi|292820206|gb|ACYT02000070.1| GENE 4 1473 - 1697 189 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192295|ref|ZP_06609406.1| ## NR: gi|293192295|ref|ZP_06609406.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 74 1 74 74 134 100.0 2e-30 MKHSEFYEAVEATFGSALGRSYVSDLYLASLGATALDALSAGANPDAVWATLCEETGRED ARWIHRVDPRERGR >gi|292820206|gb|ACYT02000070.1| GENE 5 1946 - 3037 1842 363 aa, chain + ## HITS:1 COG:Cgl1910 KEGG:ns NR:ns ## COG: Cgl1910 COG0468 # Protein_GI_number: 19553160 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Corynebacterium glutamicum # 14 361 16 368 376 490 74.0 1e-138 MAARKAPAAKPATNDRNKALEVALSQIDKQFGKGSVMRLGDDNRPPVQVIPTGSLALDVA LGIGGLPRGRVIEVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVD TDSLLVSQPDTGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARL MSQALRKITGALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIET LKEAGAPVGNRTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSW FTYGDDQLGQGKENVRQFLVDNPELANEIEQKILVSLGIGEAPDPDQASQDVPDIDPDED AGF >gi|292820206|gb|ACYT02000070.1| GENE 6 3041 - 3667 440 208 aa, chain + ## HITS:1 COG:ML0988 KEGG:ns NR:ns ## COG: ML0988 COG2137 # Protein_GI_number: 15827470 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium leprae # 44 186 15 158 171 77 43.0 1e-14 MVRYLDPEDHPELGEERRRCCSPGERLARARERNAALTGTAAIEAAREVALRKLDARACS RSELTSAIEGRGFSAKIAVEVVDRLEAVGLVDDQAYADALVRSRFSGTGASGRALREVLV RKGLDSSTIERALSQIDRDDEAERAAQLVARKRRSLAGVPRETAYRRLSSMLARKGYSPS VASAAVRDALDTWGEEDSGTEEAWQWGL >gi|292820206|gb|ACYT02000070.1| GENE 7 3655 - 4167 266 170 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 12 161 752 902 904 107 44 4e-22 MGTLIAVSDEALADLIADLTQRGLTIATAESLTGGGLVARLVDVPGASHVVRGGACTYAV DTKASVLGVSESQLAATGPVNEQVARQMARGARELFRADIGVSTTGVAGPGPADGFPAGT VHVACAHPAGEEHRLLHLDGQRAAVRAGAIDAAIALVRDVLDFAGAQVGD >gi|292820206|gb|ACYT02000070.1| GENE 8 4179 - 5717 455 512 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase [Brachyspira murdochii DSM 12563] # 17 467 6 437 440 179 27 5e-44 MNTMTQDGTALPRTYAVRTLGCQMNEHDSERMAGLLEQAGLIPVEQVPEAAARATDAGDM GADVIVINTCSVRENAATRLFGNLGQLASVKRARPGMQIAVGGCLAQQMRDGIVQKAPWV DAVFGTHNIDVLPALLRRAEHNRAAAVEIEESLKVFPSTLPTHRESAYAAWVSISVGCNN TCTFCIVPHLRGKERDRRPGDILAEVEAVASQGAIEVTLLGQNVNSYGVGFGERGAFADL LRAVGRVEGIERVRFTSPHPAAFTDDVIAAMAQTPTVMPSLHMPLQSGSDAILRQMRRSY RRERFMGILERVRAAIPEAAITTDIIVGFPGETEEDFQATLDVVEQARFSSAFTFLYSPR PGTPAADREDQVPDDVALERYQRLVKLQERICAEDNAALAGTEVEVLVSEGDCRKDGATH RISGRARDNRLVHVALPEGMAEEDRPRPGDMIRATVTYGAPHHLIADSGTQGGLFEVRRT RAGDAWEARQASDEPDNTVSLGIPTLRVGAPS >gi|292820206|gb|ACYT02000070.1| GENE 9 6101 - 6631 751 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192301|ref|ZP_06609412.1| ## NR: gi|293192301|ref|ZP_06609412.1| hypothetical protein HMPREF0970_01757 [Actinomyces odontolyticus F0309] # 1 176 1 176 176 320 100.0 2e-86 MPEWKSFTFGEGGEAVSEATPAPSPAMEADEYAAKWGTEVAEVSIARIENVLEGDGLPHG SSEFIAVTQLEDVRFQIHREPVDAPWLQIETRIEPEGEGHTELSLQAVANHWNTEHLQPT VIPIEDEGRWVLVAASRFFVGEGLSDRQIHAMLRRGLIIGLSAAQELPGLLAESAQ >gi|292820206|gb|ACYT02000070.1| GENE 10 6624 - 7070 729 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192302|ref|ZP_06609413.1| ## NR: gi|293192302|ref|ZP_06609413.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 148 1 148 148 269 100.0 5e-71 MSTTDTLPVTLDRITRAVEAVGLIPFVSSTGQVAAILPNRTVRIAVPEGHPAQGVADYPR FFDPSHADQIASAVRRLNASTYLPKVTSGTTETGAIALHLQHTFNWVVGATDDQVAAEVS QFIMAAVAMMNQLDIMFPDQWTKEGTNA >gi|292820206|gb|ACYT02000070.1| GENE 11 7131 - 8120 1006 329 aa, chain + ## HITS:1 COG:MT2799 KEGG:ns NR:ns ## COG: MT2799 COG0324 # Protein_GI_number: 15842265 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Mycobacterium tuberculosis CDC1551 # 14 300 5 290 314 221 52.0 2e-57 METSVRRASDVLCAVVGPTASGKSDLALELACVLPGALGASGAGEIVSADALQLYRGMDV GTAKTPVEERRGIAHHQIDVLEVRDEASVAAYQKHARADVAGIHEREGVAVVAGGSGLYQ RALLDVIEFPGTDPAVRARLEEEAEGPMGSRGLHDRLTQLDPVSAERIDPHNARRIIRAL EVIELTGRPYSASMPRHEFVAPSLMVALRRPMEELDGRIAVRTRAMMDGGLIEEVRALID VGLREAKTASRATGYAQALAVIDGQMSEDEAVESIALATRQLARRQVKWLRPDPRVHWLD VENFDSNEAVARHVVELTQREAESSLGRS >gi|292820206|gb|ACYT02000070.1| GENE 12 8171 - 9091 930 306 aa, chain + ## HITS:1 COG:Cgl1898 KEGG:ns NR:ns ## COG: Cgl1898 COG0253 # Protein_GI_number: 19553148 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Corynebacterium glutamicum # 1 301 1 271 277 134 37.0 3e-31 MNTQLPAHARVVKAHGAGNSFVVATDQYDDYDPSEVEVATLCSPAFGIGADGFIRAVERD GLWFMDYRNADGSKAEMCGNGVRVFVDHLRREGLVDLPIGQTLDVATRGGIKRVTPESED EGQGASYRVDMGSAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETLRGVFL PTVDVSQIPQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQACGTG CCAAALATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPRITDASVFLTGPATRV AEIHLP >gi|292820206|gb|ACYT02000070.1| GENE 13 9161 - 9877 666 238 aa, chain - ## HITS:1 COG:BS_ybxB KEGG:ns NR:ns ## COG: BS_ybxB COG2813 # Protein_GI_number: 16077174 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Bacillus subtilis # 35 236 1 199 201 106 30.0 5e-23 MWVVSITILFVGASSVARAAPICACARGRDRLSSVDEQYFTDSSPASAEEIRTIEVSARG FDLSMRVSSRVFSGSKLDLGTRQLLEIAPDLPEDGTFLDLGCGWGPIATIMSLESPNADV WAVDVNSRAVDLTQRNAQSNGAKGVRALKAEEALTSSQESDTRFDVIWSNPPVRVGKDAM HEMLLAWLGRLAPTGVAYLVVQRNLGADSLITWLNGQGFQASKYASKKGFRIIEVRSA >gi|292820206|gb|ACYT02000070.1| GENE 14 9861 - 11393 613 510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 93 484 23 413 425 240 38 2e-62 MDTTHTGADSSKEERDQRVNDVVARILARSGTALASTTGQDTSQDAGALEREARAGTRRV DTGASDREDISEVEYRQVRLEKVVLVGLRTTQSEEEAENSLRELAALAETAGSRVLDGII QRRMKPDPATYLGSGKARELADIVRSVEADTVIVDEELAPSQRRGLEDVVDAKVVDRTAL ILDIFAQHAKSREGKAQVELAQLEYLLPRLRGWGESMSRQAGGRVAGGAGIGSRGPGETK IELDRRRIRTRMAKLRADIARMEPARRTQRNSRRRGAVPSVAIAGYTNAGKSTLLNRLTD AGVLVQDALFATLDPTVRRARAADGREYTLTDAVGFVRNLPTQLVEAFRSTLEEVGQADI IVHVVDAAHPDPVSQVQAVRSVIDTIEGASEIPELIALNKADLASPEQIALLRTVFPNAV PLSAHTGWGVEALRAALEDMLPRPRVAVDAILPYSAGSLVHRIHEEGDVEREEYVETGTR IVARVDEALAAVIAREAVGGTVGDAAVSGE >gi|292820206|gb|ACYT02000070.1| GENE 15 11480 - 13330 1935 616 aa, chain + ## HITS:1 COG:Cgl2468 KEGG:ns NR:ns ## COG: Cgl2468 COG1199 # Protein_GI_number: 19553718 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Corynebacterium glutamicum # 8 610 48 662 665 441 43.0 1e-123 MCAEGAAALEDRQHLLVQAGTGTGKSVGYLVPLLTHCAMNGVRGVVSTATLALQRQILVK DAPVVVDAVASATGARLKVAVLKGWSNYACLHKLDGGYPTEGTLFEDHDMSVGPTGELGK EILRIREWISETTTGDRDDLVPGVSDRAWHHASVAKPECLGKHCPLIDECFAQAARLEAA DADVVVTNHSLFGINACGEGELFGEYDAVVIDEAHELADRVRSQAAADLTVARVSRVARS LRSNLSIDSTDLDEAGAGVGAAMSPLEEGLLEYRPSALVDAMIVLDGAARRASHEVSEAQ GEPAAKLLARAAIDELIGALDAWGRDPDQSIAYITKDESDNARLTVGPLDVSAAIGGNGI GERPAILTSATLAIGGNFDFMAAQVGMAVSGVPWHGIDVGSPFDHGRQGIRYVATHLPLP GRDGPSEELLDELVELAQASDGGMLALFASRRGAMAGAQALRERTDLTVYLQGEETLAQL IQRFREERDSCLVGTMSLWQGVDVAGAACRLVVIDKIPFPRPDDPVSRARSMDVERRGGN GFVSVSLTHAALMMAQGVGRLLRSTDDRGVVAILDPRVVTKRYGGFIMRSLPAMWPTTDP EVVRGALRRLAKGSDR >gi|292820206|gb|ACYT02000070.1| GENE 16 13433 - 14422 1367 329 aa, chain + ## HITS:1 COG:CAC0267 KEGG:ns NR:ns ## COG: CAC0267 COG0039 # Protein_GI_number: 15893559 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Clostridium acetobutylicum # 16 322 3 307 313 262 43.0 6e-70 MENQAQTLYPSKSSGRPSKIAIIGAGAVGTAVAYACAMRGDARSIVLQDINKAKVEAEAL DMAHGIQFTPAGSIEGSDDVEIVRGSDLIVVTAGAKQQPGQSRLELAGSTVNLMKKIVPN LQNVAPDAHFMFITNPVDVVTYAALKITGLPRNQVFGSGTVLDTSRLRYLVSRETGVATQ NIHAYVAGEHGDSEVALWSSAEIGNVPLSQWGPTLSGGIFDSALRNSIAQEVVQSAYKII EGKGATNYAIGLAASKIVGAVLRDEQRVLTISTLLEDWEGISDVVMAAPTIVGRDGAGRV LHPPLTLNERDGLTASAQRLRQVARDLGF >gi|292820206|gb|ACYT02000070.1| GENE 17 14483 - 15163 672 226 aa, chain - ## HITS:1 COG:ML1003 KEGG:ns NR:ns ## COG: ML1003 COG1974 # Protein_GI_number: 15827479 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium leprae # 3 226 20 235 235 213 52.0 3e-55 MTERSISDRHRAILRVINEKLASSGFPPSVREIASAVGLASPSTVKHHLDALEADGYLVR EPGLPRALDLTDRARAELGITPSTQPSEKVVRIEVPISHVEEEGTAIPLVGRIAAGAPIT AEQHVEDVFRLPTSMTGHGDLFMLEVSGESMVDAGIFDGDYVVIRSQNEARNGEFVAAMI DGEATVKELSITGGHVWLLPHNADYSPIPGDEATILGKVVTVIRSL >gi|292820206|gb|ACYT02000070.1| GENE 18 15162 - 15353 67 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509061|ref|ZP_02044703.1| ## NR: gi|154509061|ref|ZP_02044703.1| hypothetical protein ACTODO_01578 [Actinomyces odontolyticus ATCC 17982] # 1 63 1 63 63 116 100.0 4e-25 MALLRIGVDANVHGWASTRYVKDKPISRKMKHMFEWVSTLVTERAIVQVFDEQMFDLFFW RFS >gi|292820206|gb|ACYT02000070.1| GENE 19 15350 - 15814 426 154 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192311|ref|ZP_06609422.1| ## NR: gi|293192311|ref|ZP_06609422.1| putative LysM domain protein [Actinomyces odontolyticus F0309] # 1 154 1 154 154 216 100.0 3e-55 MSVPVATQTAVSFPARRHPLRAVEDAPQATVRDISTAPSARRRLDAQRGDDPSFLRAPAA PRRRTRSSRRGIIAGALATVVLSAGAGALGLAIQPAAYDGPTVTKAVVSGDSVWSLAQNV KTDRSLEQVVADIERMNDVQGALQPGQRVVVPVR >gi|292820206|gb|ACYT02000070.1| GENE 20 15871 - 16458 583 195 aa, chain + ## HITS:1 COG:Cgl1882 KEGG:ns NR:ns ## COG: Cgl1882 COG1327 # Protein_GI_number: 19553132 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Corynebacterium glutamicum # 1 149 1 149 150 171 59.0 1e-42 MHCPFCHNPDSRVVDTRIADDGASIRRRRECTHCKKRFTTLETSSFQVVKRSGVVESFSR NKVVSGVKKACQGRPVSDDQLAILAQQVEEQLRSTGVSNVSTNEVGKAILPFLRDLDVIA YLRFASVYRQFDTLDDFEQAIQALRERAQGGDTVSEAGAHADVEPAAPAPAKKPRKARAA RKRSVSNAPTLLGDD >gi|292820206|gb|ACYT02000070.1| GENE 21 16529 - 18436 1913 635 aa, chain - ## HITS:1 COG:Cgl0395 KEGG:ns NR:ns ## COG: Cgl0395 COG0318 # Protein_GI_number: 19551645 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 40 554 42 563 568 390 39.0 1e-108 MDLTTKLRELYAAGVAYNIAIPDRPIPDMVLEVASRYPKRAAIDFFARQLTYAELAQEMR QAAGALHQAGVRPGDRVALVMPNCPQHAVAVLGTMLLGAVAVEHNPLAPAGELEGEYERH GARVTIAWSKSLEKLTFLGRGHTTFCMDLTTALPVASRMALKFPVKAAREKREQLSSPRP SWARSWTRAMRTATPWRGDCPSAMEDVALLIHTGGTTGVPKAAALTHANLMANVEESIAW VPVLHEGAEVFYCILPLFHAFGFTIGFLAGLRLGATIAMFPKFDTALVLAAQRRLPCTFF LGVPPMYERLLAAAQGTNADLSSIHFSLSGAMPLSAELADQWEQATGGLMIEGYGMTEAS PIILGSPLASSRARGALGIPFPSTQVRIVDPENPSREVADGEVGELIARGPQVFSGYWNQ DDETADVFTEDDWLRTGDLVQVRDGFIYMADRRKEMINSSGFNVYPTQVENAVRSMPGVL DVAAVGVPAGESGEDVVAAVVLEAGASVTLADLRKWAEKSLAHYALPRQIVVMTELPRSQ LGKVMRKKVREQIMGAQAAATDAVAGAREAVAGARGAVSEAVAEARGSVAEAMASARETV AEAVAGVRASSSEQSSAPTDASDAPTQRHEETDDE >gi|292820206|gb|ACYT02000070.1| GENE 22 18522 - 19763 1651 413 aa, chain - ## HITS:1 COG:VC2481 KEGG:ns NR:ns ## COG: VC2481 COG0111 # Protein_GI_number: 15642477 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Vibrio cholerae # 15 407 12 404 409 362 49.0 1e-100 MSLSAPVCHDGGMTRALLLENPHDVADGIFAKFGIEVTRVTGALSEDDLIDALEGVDYLG LRSKTEVTERVLRARPEIKAIGAFCIGTNQIDLATATEMGVAVFNAPYSNTRSVVELAIG EIIDLSRRVTVKNSRLHRGVWDKSADGAHEVRGHTLGIIGYGNIGTQLSVLAEAMGLNVI FYDAAERLALGNATQMPTMEAVLREADIISVHVDGQESNTNLIGRVEFELMKPGALFINL SRGHVVDVDALHAALVSGHLGGAAIDVFPEEPRANGDPFNSPLATLDNVILTPHIGGSTE EAQYDIGRFVAAKIGEYQASGSTDMSVNLPNLTMNIGKRSRYRVRLIHRNVPGVMARVNQ IFASSEANVDAQILATVDEVGYVLTDISAGLGREALEELSHLPETVRLIATPL >gi|292820206|gb|ACYT02000070.1| GENE 23 19787 - 22063 2204 758 aa, chain - ## HITS:1 COG:Cgl1339 KEGG:ns NR:ns ## COG: Cgl1339 COG3973 # Protein_GI_number: 19552589 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 17 746 24 753 755 338 36.0 3e-92 MATSTHRESSTDLPLPEQEFVDSAYERLDALRASYRDRQGRVHSTHGVGNAQGWTEREAL SAHLGEMAARLEGVEERLVFGRLDMADRSTRHVGRLSLSHEDGTPLLVDWRAPAARPFYQ ATSAEPDGVVRRRHISTRDRRVTGLEDELLDASSASGLELQGEGALMHALSEARDGRMGD IVATIQSEQDRIIRASDKGLLVVQGGPGTGKTAVALHRIAYLLYAHRERLERSGVLLVGP SRLFLRYIEQVLPSLGETGVVSVTLGDLVPGVNARGSDDEAVAHIKGLPAWAKIVKEAVR ALAKLPDGDQVLRVWNRSVTLTRADVETARRRAKRSGRAHNVARESFARELMDVLALRLA REAGDADSEGGVDPEVKRSWLIEIRDSVDCRRAINTAWMPTSAQTLLRRLYARPEVLAAA NRKAGSPLRPDELAALVRPRSAPWTVSDVPILDECEELLGPMPSSSTTSREADEGAIERA REAIEAQNLGGGIVTAQMLAEQVAGQDTWTPLSETAAKDRTWAYGHIVVDEAQELSPMAW RALLRRCPSRSFTVVGDLDQRRGSKRPPTWEKALGPAARALAAEYALTVSYRTPATLTTL AEGVVARAGVPVLYPMTAVRDVEDCYRVTHVDAPKDAPASSSKENSPLWRAVAQAQGESE ERLDREAGTSRGRIALIVGKERARAWGADVDGETALSERVCLLSAMASKGLEFDSVILVE PAEILGDGVGDLFVALTRATHDVHVVHCAPLPAGMEEW >gi|292820206|gb|ACYT02000070.1| GENE 24 22237 - 23313 1090 358 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11570 NR:ns ## KEGG: HMPREF0573_11570 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 8 263 9 262 349 179 39.0 2e-43 MSINATDLYADGPAAGAKAKILLIHFDGAIDAGAAGRIAIGQLLRSLHNERVATFDADAL MDYRSHRPIATVDNWVSSPDMVMPETVLDLVEDDMGNPILVLHGAEPDAHWESFTNAINE LCERAGVEITFSLHGVPSGVPHTRPTPVHVQATDASLLPPGSGAISNHMQFPSPLSTFMQ IRMGQRGIGGLALLGAVPYYMADTGYPAASSALLTSFAKFADLSLPVGDLEQGAAQDQEN IAKLVEGNPDISHTVSNLEEHFDAWTGGEGAIPLPGLGQRPSAGGEEKTPKDIGDVIEAY LAQVSRAQDEEIESVQRAPRTEESEEPSKPDTIEDVLARIEARRNGKGPGPSAPRHRA >gi|292820206|gb|ACYT02000070.1| GENE 25 23372 - 24193 448 273 aa, chain - ## HITS:1 COG:Cgl1208 KEGG:ns NR:ns ## COG: Cgl1208 COG0421 # Protein_GI_number: 19552458 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Corynebacterium glutamicum # 35 266 50 290 314 133 35.0 3e-31 MARSSSSRDISFDTDFGSARIRWDGPRATLFLGDVESSAVDTSDPTYLEFEYMQHMDAVV SSLWGPQDRFRALHVGGAACALACAWSSSRPNSRHVAVEIDRLLAEQVREHFPIPGAPQV KIRVGDGRAVLDGAREGSFDVIVRDAFASGVTPDHLRTVECADRARRALAASGVYLVNCA HGGPANARQDVAALQEVFPFVASIQDPKVGRGGRRGNVVTLASAADVVDVDQIDRALRTL ALPARITRPADLTRWVAGTRALTDSLVGYPQAD >gi|292820206|gb|ACYT02000070.1| GENE 26 24241 - 25584 1093 447 aa, chain + ## HITS:1 COG:mlr1877 KEGG:ns NR:ns ## COG: mlr1877 COG0389 # Protein_GI_number: 13471787 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Mesorhizobium loti # 18 400 2 395 415 236 39.0 7e-62 MSNAPRDARAKRDWGSDDSATPILHVDMDSFFAQVEMREDPSLVGRPIIVGGTSGRGVVT SATYEARALGVRAGMPTSRARALCPGAAFIPGNHGLYQRYSRQVMAILATVTPVLEQVSI DEAFLDVSGARRRLGSPTQIARLIRARIREAVGLPASVGIAATKSVAKIASSHAKPDGLL LIPQAATVDFLHGLPVGALWGVGGKTAAILDREGIDMIGDLANAPLTRLTKLLGVASAHH LHDLSWGRDPRPVAPTRAEKSVGMERTFEEDVRSRADIEEFILAASHDCARRLRAGGVVG WTVGIKMRGTDFHTITRSVSLVAPTDTGRDIAQAAQGLFAREDIPIGGVRLFGVRVEGLQ ARSGGVAVTLDRDERPAASERAMDQIRDKFGAGALAPATLLGKKVPGRRSFGGDSDEAGA SPAGPSAQAHGQGSDPGNEEPTQGTLL >gi|292820206|gb|ACYT02000070.1| GENE 27 25652 - 26068 528 138 aa, chain + ## HITS:1 COG:no KEGG:Achl_1561 NR:ns ## KEGG: Achl_1561 # Name: not_defined # Def: membrane protein # Organism: A.chlorophenolicus # Pathway: not_defined # 1 135 1 120 124 71 34.0 1e-11 MALTEYEKKILEQMEASLREEDPALASQMSAPAVEEDPEPARGPRAPRRIALGLTGAVLG MVVLVAAVSLGYSILSILLGVAGFALTVAGVLYAMSRPGASSSESADESSARGADKSSGW SSFIQDQERRWDDRRDND >gi|292820206|gb|ACYT02000070.1| GENE 28 26281 - 26382 69 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHNRCNSLLLQHLHEAWERLKGTGATLGEDSGE >gi|292820206|gb|ACYT02000070.1| GENE 29 26592 - 27023 444 143 aa, chain + ## HITS:1 COG:MT2224 KEGG:ns NR:ns ## COG: MT2224 COG2001 # Protein_GI_number: 15841658 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 1 143 1 143 143 137 44.0 6e-33 MFLGTYEPKLDDKGRMFLPARFREDMEGGIVLTRGQEHCIYAFPASEFENMTAELRRAPL SSKQARDWIRVMLSGAYKEVPDKQGRISVPADLRAYAGLGRELAVIGAGSRAEIWDASAW REYLAVQEEVFSNTAEEIIPGMF >gi|292820206|gb|ACYT02000070.1| GENE 30 27135 - 28142 867 335 aa, chain + ## HITS:1 COG:ML0906 KEGG:ns NR:ns ## COG: ML0906 COG0275 # Protein_GI_number: 15827426 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Mycobacterium leprae # 19 326 42 355 372 303 56.0 5e-82 MRDASEPVRDSSRPASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERF EGLTVIGIDRDPQAIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDL GVSSLQLDEADRGFAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAP RIARLIIRRRDDAPITRTGELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILE RALPRALSSLRVGGRLVVESYQSLEDRIVKDVLRCGSTSAAPPGLPVVPDEMAPSLRLLT KGANKADQAEQDHNPRSASVRLRGAELIREWKDLA >gi|292820206|gb|ACYT02000070.1| GENE 31 28139 - 28531 472 130 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509048|ref|ZP_02044690.1| ## NR: gi|154509048|ref|ZP_02044690.1| hypothetical protein ACTODO_01565 [Actinomyces odontolyticus ATCC 17982] # 1 130 1 130 130 180 96.0 2e-44 MSAATAKARPAARPELRRDEVHELRLVQGTRPRRSLMAIVALLVVVALASVVTSMVLNTR MAQTSFEIREQQLALNELEAQSWTMRAELDRKASPTELEKAAKANGMVPAGKSGFITLET GTVEAGTPAK >gi|292820206|gb|ACYT02000070.1| GENE 32 28549 - 30282 1729 577 aa, chain + ## HITS:1 COG:Cgl2114 KEGG:ns NR:ns ## COG: Cgl2114 COG0768 # Protein_GI_number: 19553364 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Corynebacterium glutamicum # 24 569 34 643 651 238 30.0 4e-62 MDTVITRSRWVLGFFIFALSICAVRLVQLQIIEGPSLAAQGQRVRTSSTEVAAARGTITD ATGVVLANSIQTYDIAVNQLNIRAYVHRDDDGNEVGRGPAEAARQLAPLLGMNEAELGGM MLGDSTYEYIKRNVDAVTYREIRKLDIYGIEWESVFEREYPNGNVATPVIGTVNADGQGS SGIEAQFDAFLTGTPGAQAFEIAPNGAVMPGGKKTTVEPKNGGNVELTMHADLQHQVQDL LDARVAKHHADWGAVVIEDVATGHVLVMADSNSTEPDNAKPQKVHAVQDTFEPGSVGKLV TVGVALNQGTISPTSVFQVPYALDLPDAGGPITDFHEHDGETLTVTGVLAESSNTGTVLI GQTVSDDQRYSMMRAFGFGQETGIELPGESAGLLRNADQWQGRDRYVTMFGQAYAITAMQ EASALATIANGGVRISPHIVKSWTNANGTVEVPDTSQPVQVMDAQAASQLLTMMESVVED ERGTAGAAKVPGYRVGVKTGTAETVIDGAAGLVSTTAGIIPADAPRLAIAVVLYNPKVAS VSSDSSAPLFGDIARTAVANLGIPASTGSANLYPTTP >gi|292820206|gb|ACYT02000070.1| GENE 33 30300 - 31697 1442 465 aa, chain + ## HITS:1 COG:Cgl2112 KEGG:ns NR:ns ## COG: Cgl2112 COG0770 # Protein_GI_number: 19553362 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Corynebacterium glutamicum # 8 458 9 489 514 264 42.0 3e-70 MQASAQWIAVAVSGRLVGNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATR GAVAVIVEHEVDEAVTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKD LLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTDIVAP DVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLATGRVI RFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAAAAGALT LGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAALASIG RDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPEVPHREV AADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREKGTTQ >gi|292820206|gb|ACYT02000070.1| GENE 34 31694 - 32779 1613 361 aa, chain + ## HITS:1 COG:Cgl2111 KEGG:ns NR:ns ## COG: Cgl2111 COG0472 # Protein_GI_number: 19553361 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Corynebacterium glutamicum # 1 360 1 363 366 306 49.0 4e-83 MIGLIAAFIIAMALSVTGTPILIRFLVMHQYGQFIRQDGPTQHLTKRGTPTMGGVVIILA TVVAWLIGSLVAGAGPSWSGLLLIFLFVGLGVIGLLDDGIKIMRQRSLGLHPSGKIIGQV AVASLFALGTLIKPNEFDEYPGTLAISFARPTAMTLGFAGLGLGIALYLIWTNLIVTAWS NATNLTDGLDGLAAGVSIFVFGAYTFITYFQRIQACTQLGANQANCYSTRDPLDLAIFCA ALIGALAGFLWWNASPAQIFMGDTGALALGGAVAGLSILTQTQLLAIVVGGLFVAVVLSD VIQISVFKATGKRVFRMAPLHHHFELLGWKEVTIVIRFWLIAAIIAVAGAGLFYAEWVSL R >gi|292820206|gb|ACYT02000070.1| GENE 35 32776 - 34221 1373 481 aa, chain + ## HITS:1 COG:Cgl2110 KEGG:ns NR:ns ## COG: Cgl2110 COG0771 # Protein_GI_number: 19553360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Corynebacterium glutamicum # 66 464 71 457 472 215 41.0 2e-55 MSRFAAVVGWGKSGQGAAGALLARDWQVRAFDARGGQSLLFDDVAGVDVHVDDDPEALAR AIVEANLDLVVVSPGVPAHHPVFSACEAAGIEVWGEVELAWRLQEEGPHAGRPWLVVTGT NGKTTTVGMLGEILRCAGAKAEEVGNIGTPITRAIDSDAEVFAVELSSFQLHTVRTVSPL ASICLNVDADHLDWHGSVEAYAADKARVYENTIRACVYPASDRRVEQMVENADVVEGARA IGLTLGSPSVSQFGIVEGLLVDRAFVEDRARHAAALAHISDLAGAYGPHPSAAVVSDALA AAALARAYGVEPEAVEAGLRAFRPAGHRRAIIAHAADLTWVDDSKATNAHAARASLAGLP PRSAIWIVGGDAKGQDFTELIRQVEPTLRGVVVIGEDRAPLVEALQAGAPDVPRVEVDGH EDWMFSVVNEAVALSMPGDTVVLAPACASWDQFDNYGQRGDAFADAVSRLAAQWGSAGGD E >gi|292820206|gb|ACYT02000070.1| GENE 36 34169 - 35464 1473 431 aa, chain + ## HITS:1 COG:RSc2845 KEGG:ns NR:ns ## COG: RSc2845 COG0772 # Protein_GI_number: 17547564 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Ralstonia solanacearum # 54 396 48 397 413 164 34.0 3e-40 MLCRAWQPSGGVPVATNKRGWHIPTITLPRIRFGSGQERKDDPALTYYLVIVPALLLSVF GLIMGFSAQTVTAIAQGENPYTAYARPLIIILVSLVIATIVLLVPQRWLMHLAPVMFVGA LGFQSLVLSPLGRSEGGNANWVKVGPIMAQPSEFLKLALIVFLAFMVSKSASKRGDWKAM SLAVGLPILTALGAVMLGRDMGTAMVVAVGALGAMWVAGLPKRWFGGLVVLAVPTMVLLV LSNPTRIRRILAILPGTSKGPDESAPEQIDHSLWALGSGGLTGLGPGASREKWNYLQAAH TDFIFAIVGEEFGLLGTLGVLLCLGLLIWGMFRVARESSDLFVTIVSSGVASWIGIQTVI NVLSVTGLGPVIGVPLPLVSYGGSSFLFTITAIAVVASFARARAGIWMIGRPDEASAGRD PRLAPRRRSAR >gi|292820206|gb|ACYT02000070.1| GENE 37 35537 - 36661 1022 374 aa, chain + ## HITS:1 COG:Cgl2108 KEGG:ns NR:ns ## COG: Cgl2108 COG0707 # Protein_GI_number: 19553358 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Corynebacterium glutamicum # 2 363 8 353 363 215 41.0 9e-56 MVKVVMAGGGTAGHVNPLLATAAQLRESGAEVVVLGTKAGLEADLVPAAGFSLVAIPRVP LPRRPSLAFFTLPSRFADAVKRCAQALQGADVLVGFGGYVSTPAYIAAKRVGVPIVVHEQ NARPGLANKVGARNAAVVALTFPSSPLKARNGHTVVTGLPLRAAIAELADRRADAEGAGQ ARCEAAERLGINADAPTLLVTGGSLGALHVNESVTAAADALPERAQVVHLTGRGKDEPVR AAVEAAGLSDRWHVIDYLTTMEDALAVADLVVCRSGAGTVAEMEALGLPCIYVPLPIGNG EQRLNAADHVAAGGAQLVDDKDFTADFVRRNVFPLLGSTRLADMAAASQSLGRAGAARAL ADLALEQVKEGDHE >gi|292820206|gb|ACYT02000070.1| GENE 38 36654 - 38045 1258 463 aa, chain + ## HITS:1 COG:Cgl2107 KEGG:ns NR:ns ## COG: Cgl2107 COG0773 # Protein_GI_number: 19553357 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Corynebacterium glutamicum # 9 457 16 482 486 326 43.0 5e-89 MSEPTLQDRFHLIGIGGAGMSVVAELLASRGATVEGSDREESAVLEHLRSVGVRAFVGHE ASHVDPSSVVVVSTAIREDNPELAIAHERGQRVIHRSQALALAASGMRFVGVAGAHGKTT TSGMLAIGLSACGRDPSVAVGGVLPQLGTGAHLGGGDVFVAEADESDGSFLNYTPAIEIV TNVEPDHLDRYHSREEFEGIFVEFARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRVVTY GRRERSLCTPDVVIADVRVEAQGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAGIEC GLSPQAIADGLGEFTGAARRFEARGQVGSRRLFDDYAHHPTEVEAAIREAHVVAGEGDVT VVFQPHLYSRTRIFAERFAQALSGADHVVLAGIYGAREDPEPGVDSSLISSRIEGAFYVE DMHEAARLAASLTPEGGVCLTMGAGSITRCASDVLDEWKRMEA >gi|292820206|gb|ACYT02000070.1| GENE 39 38105 - 38992 191 295 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|88856514|ref|ZP_01131171.1| 50S ribosomal protein L6 [marine actinobacterium PHSC20C1] # 67 293 27 262 266 78 29 2e-13 MEEAASSFDEIVSPSADEDAQEPKRRSSSLTQRRRARTTVDRPMPVADAASLLGGEEATD LGDRLRERTRARRFLLARRIALTFVTLALAAGVVWGAFFSPVFAFSSSAVVVSGEDGTLV TADSVRSSIASFEGVPLTRLNTQAVARAVESNVAVRSASVSRRWPASLRVSVTMRTGMAV EAASGGYWLVDDQGVAFQQVPSAGDYPLVTLPEDRATGAADIASVLGALDEATRAQVSAV TSTGTQVNFTLRGGQTVKWGTRGDAPQKARVLATLLANVQASTYDVSSPNHPVTS >gi|292820206|gb|ACYT02000070.1| GENE 40 39120 - 40373 1680 417 aa, chain + ## HITS:1 COG:MT2209 KEGG:ns NR:ns ## COG: MT2209 COG0206 # Protein_GI_number: 15841642 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 1 313 23 335 401 375 75.0 1e-104 MATPQNHLAVIKVVGVGGGGVNAVNRMIEVGLKGVEFIAVNTDAQALLMSDAETKLDIGR ELTHGLGAGADPAVGRKAAEDHIDEITAALEGADMVFVTAGEGGGTGTGAAPVVAKIARD AGALTVGVVTRPFSFEGNRRAAQAEGGVTTLREEVDTLIVIPNDRLLEISDANISVLDAF RAADQVLLSGVQGITELITTPGLINVDFNDVKSVMKDAGSALMGIGAATGEDRALRAVES AISSPLLEASIDGAHGVLMFFQGGSDLSLQEVYSSSQLVREAAHPEANIIFGNVIDDALG DEIRVTVIAAGFDEATDAALSRPNVARVSAPVAQQRPAAPEAKAPATETTRITQLSTRRP QHRADVAAPVRVAAPAPVETPAAAEYEESESEHSFEVPRVYPEAPEKEELDIPPFLR >gi|292820206|gb|ACYT02000070.1| GENE 41 40373 - 41131 396 252 aa, chain + ## HITS:1 COG:Cgl2104 KEGG:ns NR:ns ## COG: Cgl2104 COG1496 # Protein_GI_number: 19553354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 26 249 31 240 246 118 37.0 1e-26 MSDKLWAGARVHLTEVDPGTGALCGNVGLHVGDQESLVRERRRSLAATLGRDIVWMDQTH STRVELIVRCESAPTMAASREALGKPATGEWGPVDADGIIVDARGWQGAPALAVQTADCL PVVFSAASGQIVAAVHAGRRGLLGGILDKTVARIRSLDGGPIDTLIGPAICGRCYEVPAD MADESEELMPGIRSVTSWDTPALDLPRAAASTLGARGVRVDIDERCTLEDADLFSYRADS FCGRQALIIVPA >gi|292820206|gb|ACYT02000070.1| GENE 42 41312 - 41764 496 150 aa, chain + ## HITS:1 COG:ML0920 KEGG:ns NR:ns ## COG: ML0920 COG1799 # Protein_GI_number: 15827440 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium leprae # 60 135 119 194 210 89 59.0 2e-18 MSESFGARARKFMGWYSPEEPIDEFDEFDEVEEVAPVADITPVSRPTLTSIRRDEPAEDL TRIVTIHPTAYSDAVTIGEAFRDGTPVIINLTDMGEEEARRLVDFAAGLSFGLHGVIERV TNRVFLLSPATVEVAGDNTSGRRGSLYNQG >gi|292820206|gb|ACYT02000070.1| GENE 43 41773 - 42084 367 103 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11863 NR:ns ## KEGG: HMPREF0573_11863 # Name: not_defined # Def: transmembrane protein # Organism: M.curtisii # Pathway: not_defined # 7 101 5 98 99 83 55.0 3e-15 MAILGWIGWGLSVLINLYMMVLFARVILDWVQFFARGWRPSGILLVLANVLYALTDPPIR WIGRFVPPLRLGGGMAIDVGFMLLFLVLIVGQRFATFLYFLSL >gi|292820206|gb|ACYT02000070.1| GENE 44 42257 - 42829 936 190 aa, chain + ## HITS:1 COG:MT2204 KEGG:ns NR:ns ## COG: MT2204 COG3599 # Protein_GI_number: 15841637 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Mycobacterium tuberculosis CDC1551 # 4 185 3 234 260 65 29.0 5e-11 MALLTTEDVLNKKFQYVKFREGYDQDEVDEFLDEVVSTIYSLQMENQDLKEKLEAAERRI AELSNSDYTPAENPAPVAAPVVETPAPALTGPQDAESATSMLALAQRVHDEYVRDGEEQS AKIIAEANAQRDAIIADAQKQKDSLLSQLDQERELLENKINGLRTFEAEYRSNLRNHLET LLKEVDNGEN >gi|292820206|gb|ACYT02000070.1| GENE 45 42900 - 43403 701 167 aa, chain + ## HITS:1 COG:Cgl2088 KEGG:ns NR:ns ## COG: Cgl2088 COG0597 # Protein_GI_number: 19553338 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Corynebacterium glutamicum # 28 167 43 182 193 86 36.0 2e-17 MADSSHPTHTRATWMYAGLVFAAAIATDQVSKMWARTVLDGQGPRPLIGQWLSLSLVHNS GAAFSFAAGKTWILTIFTVVIIGVLVVMARRVHRASTLLAIALLAGGAVGNLIDRLTAEP GFGVGHVTDFIAYGNWFVGNVADIWIVLGAPLLALALSREPSKEDAQ >gi|292820206|gb|ACYT02000070.1| GENE 46 43400 - 44317 945 305 aa, chain + ## HITS:1 COG:Cgl2087 KEGG:ns NR:ns ## COG: Cgl2087 COG0564 # Protein_GI_number: 19553337 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Corynebacterium glutamicum # 3 301 6 308 310 353 60.0 2e-97 MSSRMLPVPDALVGERVDAALARMLGLSRSRCAELAGDGHVLVNGVAAGKSDRLGALDII EVTIPEPESKPTPVTDMAILYDDEDIVVVDKPVGVAAHTGPGWEGPTVLGNLEAAGYRIT SYGPPERQGIVHRLDVGTSGAMMVAKSELAYTVMKRAFKERTIEKVYHAVVAGHLDPASG TIDAPIGRHPSREWRMAVIDGGKRAVTHYDTLELMAGAQLTEVHLETGRTHQIRVHMAAV GHPCVGDTFYGADPTQAERLGLTRQWLHAVRLGFAHPRTGMPMSVSSPYPDDLADALEEL RHPRN >gi|292820206|gb|ACYT02000070.1| GENE 47 44447 - 47989 5082 1180 aa, chain + ## HITS:1 COG:MT1598 KEGG:ns NR:ns ## COG: MT1598 COG0587 # Protein_GI_number: 15841014 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 4 1174 9 1180 1184 1322 56.0 0 MADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAG VKPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRL GSYASTDGQFGKWPRADKELLSQFHEGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN YMPDFPVPEGEDKTSWFIKEVERGLRDRFPNGIPDDVRKQAQYEEDVIIKMGFPGYFLTV ADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNPERISMPDFDV DFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGEQLTKALP PAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGLTRQWGVHACA VIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSDALENIAL NGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNFEDISAVGALY RPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQVMQIAQKLAG YSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVVPFSAYAFNKA HSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDITVLPPDVNAS MGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVPQVVCNKRTIQ SLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGEDEDTGSGLTID IPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSDGAMADRIVK IAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFPRSYESIQTYLAQDIIVQIEGKVN VREEGMTIYGQSMTLLDLSGGADLPLDLRLPAARCTPELLTDLRGVLESYPGGSPVRLHL TEPGRTTVVELDPKLRVEQTSAFFSHIKAVVGAGGVVTSS >gi|292820206|gb|ACYT02000070.1| GENE 48 48044 - 48274 331 76 aa, chain - ## HITS:1 COG:Cgl0147 KEGG:ns NR:ns ## COG: Cgl0147 COG2501 # Protein_GI_number: 19551397 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 12 59 13 60 97 61 64.0 4e-10 MSTPTIPVRGEIKLGQFVKLASLAEDGAQARELIQAGDVTVNGEVETRRGHHLSAGDIVE VDAPWGKAAAIVGSAS >gi|292820206|gb|ACYT02000070.1| GENE 49 48367 - 49014 743 215 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11850 NR:ns ## KEGG: HMPREF0573_11850 # Name: not_defined # Def: hypothetical protein # Organism: M.curtisii # Pathway: not_defined # 2 195 17 210 261 73 31.0 6e-12 MSAHNDDIDAEFQSLVASLGSTPAAGDSLPSLDPDDTPVDESLHLEGGRLSVALVLAPIS YPEALHSLLALTGVRESIVRLKPWTAVWLRVETTPTDEEELDTLLTGQRPMPDAVDRVAR AVSNLSKYGAVALMSWLVEGDGVEPGVSGRISAQRYVGGEPEETIPAGLLLGAMPAATED LLLGRTTPADYKDSVAADGSCQGGGPFGWLRRKQS >gi|292820206|gb|ACYT02000070.1| GENE 50 49011 - 49736 792 241 aa, chain + ## HITS:1 COG:ML1261 KEGG:ns NR:ns ## COG: ML1261 COG0106 # Protein_GI_number: 15827647 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Mycobacterium leprae # 1 234 1 242 245 176 47.0 4e-44 MTILELLPAIDVTGGQAVRLSSGVIDEGSWGSPIDVARSFDEAGARWVHLVDLDLAFGRG ENSELLARVIREVPVRVELSGGITSRAAVEAGLAMGPERVNIATQALDDIDAVCEAVDTF GERIAVCLDVRGDSLAARGGSGEGGNVWVALRVLNEAGVARLVVTDVTRDGQMNGSNREL LARVADQTPACIIASGGVNSLADIEALRALGIEGAIVGKALYQGAFTLADALDVAGYEEL S >gi|292820206|gb|ACYT02000070.1| GENE 51 49733 - 50500 787 255 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192344|ref|ZP_06609455.1| ## NR: gi|293192344|ref|ZP_06609455.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 255 1 255 255 434 100.0 1e-120 MTPTPPSLTEEQKNRLAQRLSMMSHDRADVGQGLPRTARALALGQGSDGGAARLEALVDA LVFERVIVPIDVEPDPRVTGVHAGENGHNPIDFVRAQTPAGEALAIYSSAQALSAHRPGD RPMALDFRTIGLTALVETGGRIVVNPGTDAVLLPRPAVAALAQGDEWLPAWRDEALRELL LAEAIAACPAIVDVEIAYAGDGLTRVVVSVDRASFAQGADASAIKETLSAALNALGANPR LITSADRVEIAPVLR >gi|292820206|gb|ACYT02000070.1| GENE 52 50852 - 51439 723 195 aa, chain + ## HITS:1 COG:ML1394 KEGG:ns NR:ns ## COG: ML1394 COG0290 # Protein_GI_number: 15827729 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Mycobacterium leprae # 1 151 2 152 185 190 70.0 2e-48 MGPGGEQVGVVRVEDALRLAEEAGLDLVEVAPNAKPPVAKLMDYGKYKYEAAQKARDARR NQANTQLKEIRFRLKIDDHDFGVKKGHVERFLSAGDKVKVMIMFRGREQSRPEAGVRLLQ RLAEEIGDLATVESMPRQDGRNMTMVLAPTKRKADALTEQRKRREAERAERRGKRAERAS KDQARVAADKADEQD >gi|292820206|gb|ACYT02000070.1| GENE 53 51476 - 51670 261 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227383679|ref|ZP_03867101.1| LSU ribosomal protein L35P [Jonesia denitrificans DSM 20603] # 1 63 1 63 64 105 77 1e-21 MPKNKTHSGAKKRFRTTGSGKIMREQAGARHLLEHKSSRKTRRLATDQVLETADVKRVKR MLGI >gi|292820206|gb|ACYT02000070.1| GENE 54 51698 - 52078 535 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227875290|ref|ZP_03993432.1| ribosomal protein L20 [Mobiluncus mulieris ATCC 35243] # 1 126 1 126 126 210 83 2e-53 MARVKRSVNAKKKRRTVLEQASGYRGQRSRMYRKAKEQVTHSFVYSYRDRKAKKGDFRRL WIQRINAASRAQGLTYNRLIQGLNLAGVEVDRRMLAELAVGDINAFNALVKVAKDALPAD INAPKA >gi|292820206|gb|ACYT02000070.1| GENE 55 52082 - 52930 185 282 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 105 272 83 240 255 75 31 9e-13 MSFSAERLTVLDNPRADRVRRVSGLVGRSARSRSGLMLVEGPQAVRELAAHRPDAVRDVY VREDAWETHADVVDVARRATRWVHPVTAEVSAALSGDSQGICAVASLDALSRELPEPSVG ETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCVV PSFADARALIHGRSAALLGTSGGAASISLSDLLVQGVSARSRLSQSHAWVFGNEARGLSG DEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQTVRGVEN >gi|292820206|gb|ACYT02000070.1| GENE 56 52977 - 53972 604 331 aa, chain + ## HITS:1 COG:Cgl1291 KEGG:ns NR:ns ## COG: Cgl1291 COG0611 # Protein_GI_number: 19552541 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Corynebacterium glutamicum # 30 307 39 311 329 162 38.0 6e-40 MKLAELSEAQLVSHFRESFPRGERTMIGIGDDCAQVAAPEGSFIVTTDVMVEDQHFHLSW STGYEVGARVAAQNLADIDAMGGRPSALVASVVAPRDMDSDVFLDVVRGLGDRAREVGAG VVGGDLSAGEKLVISITAFGYCPGPVVRRDGARPGDVVAVSGTLGYSYAGLDLLEGGYVD PSSRGVEQLGELAPFIETYRAPRPPLGSGVAAAAAGARAMMDLSDGPATDAGRIAQASGV VVEFNRDAIEAEASQLAPAARVCAVDPVRWVLQGGEEHGMIAVFPPDALLPDGFRVVGGV RACRPDEEPQAMMDGAVLRGAWDHFSADSVD >gi|292820206|gb|ACYT02000070.1| GENE 57 54053 - 54244 128 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154509020|ref|ZP_02044662.1| ## NR: gi|154509020|ref|ZP_02044662.1| hypothetical protein ACTODO_01537 [Actinomyces odontolyticus ATCC 17982] # 1 63 20 82 82 93 100.0 4e-18 MTALTEGTPASSRPMSRVARKLAESSEEIPATAGLSLPALQGDACVPPTKALPVVDAQTD VDA >gi|292820206|gb|ACYT02000070.1| GENE 58 54345 - 55001 578 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192351|ref|ZP_06609462.1| ## NR: gi|293192351|ref|ZP_06609462.1| hypothetical protein HMPREF0970_01807 [Actinomyces odontolyticus F0309] # 1 218 1 218 218 391 100.0 1e-107 MITQQQGKADAKVRVIAAIIIGVIVFGIVYLVDMPRANPKDAVRQYLTYLADADAESALG MQTMTLSDREKRFLTNDVLCASDSRIVVESVEGKTGRWRVGEFARVEATMSVNGERVTHE FLVYHRKPTKDNLAEWYLSDGLLVRVAVTGNGVPGFSVRGDSAGVEPLSKSWQEYYFFPG VYTLTPEGRSDGGTVDSQTVVVVDGSGTAATENTTVRF >gi|292820206|gb|ACYT02000070.1| GENE 59 55171 - 56328 1161 385 aa, chain + ## HITS:1 COG:no KEGG:Bfae_02760 NR:ns ## KEGG: Bfae_02760 # Name: not_defined # Def: hypothetical protein # Organism: B.faecium # Pathway: not_defined # 49 372 669 1004 1010 79 25.0 3e-13 MSEQHYDANQGAVPPPPAPSQSPTPPPPPSPQNVVAPAVAVPQAGVTFTPMSEKSRRRIK RIVVGVVALVVLGVVATVALAIANWTRTPEAQVRQYLDLLADGKASAATAMVDPGLPNDQ RGFLSDEVMASSSARIEVEDVTVDDAEHSKERVVTATMRLDGERFTRSFRVSEAKKTFGL LKNWKIQDAMVSRVDVRADNVTHFSIGGEKMSVATLKEAPSSSIVLYPGVYTFTPEETGE YIDAAPKTISVKAATGYDSSYYGGTVELKGTYNDKMAAAALEAAAALTNSCATVPGNIDT ACPSAVQSRTLALLQVKTMPTAMKATTDEGGVYTGEATFTIQGMESWEKQHDVTSRVTAT VKTDKDGKLELDASGEPQFEVRFAY >gi|292820206|gb|ACYT02000070.1| GENE 60 56465 - 57112 650 215 aa, chain + ## HITS:1 COG:alr4567 KEGG:ns NR:ns ## COG: alr4567 COG1309 # Protein_GI_number: 17232059 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Nostoc sp. PCC 7120 # 21 177 5 166 201 64 31.0 1e-10 MSNDAKATSTRRPGRPKAGSEDKKARILSEALTLFSTQGYVATSLADIARASDISKAGLL HHYSSKDQLLAAVLDERDRRIVSRLPRPEEGAEAALDAWANMVAHNQRHPDGVALYTAMS AAVIDSKHQAHPWFREHLIGAISYLVDAFEHGKTTGEVREDAPSEQIARRLVAISDGLQV QWLCARADGGRTLNMHEVMAGVAVDMKERWLVHPE >gi|292820206|gb|ACYT02000070.1| GENE 61 57381 - 60944 2929 1187 aa, chain + ## HITS:1 COG:Cgl0099_2 KEGG:ns NR:ns ## COG: Cgl0099_2 COG1012 # Protein_GI_number: 19551349 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Corynebacterium glutamicum # 400 1180 2 751 763 574 44.0 1e-163 MANAAVPTPSHHDASARRCPDDLWALGERAIIRARRWADESAHEPTPQSAKLLSRILADP EGLTFTTRFVDDVVRPADLDVASAAMKRLSAGRKNFLPPALAAAMGLGSTASLLAPRTVT AVARRVFREIVGDLVVDATDKGLGPALARLRQGGHRLNVNLLGEAVLGEKEASHRLAEVS RLVTREDVDYVSIKVSAVTGPHNPWGFEEVVDHGVRALLPLYRLARDNGTFLNLDMEDYK DLDLTIAVFTAILDQPDMRGYEAGIVLQAYLPDSLGALQRLQEWARARLDAGGSRIKVRI VKGANLSMEKVDAEIHGWELTTWPSKQATDTNYKRMLNWAMTPERTRAIRLGVAGQNVFD IAFAYELRAARGVEDSVEFEMLSGMATGIQEVVRRDVGSLLLYVPVVNPREFDVAISYLV RRLEENAAPENFMSGVFDIATNEDIFARERDRFLAALSDVDPDAPLPVPNRVQDRLAERK AGVPAEQGSLAERARRPFVSEPDSDPALAANRQWAREIAAAIPASTRGVEAVRAGAQALD THEAVDALVEASTKAAHAWQALDPEERAAALHRVGDVLAARRGELIEVAGSEAGKTIDQA DPEVSEAVDFCHHYAEASLQLSDETYMAGARFVPVNVTVVASPWNFPVAIPVGGVAAALA AGSAVILKPAPPAKRCAAELVAAFHEAGIPRELVALAPLEDGDVSRYLVTHEGVDRVVLT GSYDTARLFRSWKPDMHLLGETSGKNAIIVTPSADPDLAVRDIVHSAFAHAGQKCSASSL LILVGSAGRSGRIARQLVDAAASLRVGLPASLDSQVGPVVVPDDEKAVRGLTTLGEGEHW VLKPRYLGDGLWTPGIRAGVEPGSEFHLTEYFAPVLGVMRVDTLEDAIEAVNEVDYGLTS GLHTLDTGELATWLEGIEAGNLYVNRGITGAIVRRQPFGGWKRSAIGSTTKAGGPSYLLG LGEVEPDRDAMAGESSHFVETLDSSVLALCRAAGPHLSADDAAELSRAVAADGAAWASDY GANRDVTGMACERNVLRYRSTPVLVRAGSGTALADTVRVLAAGILAGGPIGLSVADELPA TIRELLEGWDIEVTVEDAHSWDSRLAMVANSGGLGMRVRVLGPRDESSQQRWADATRASS GSPDVALYTGAVTAWPHSELLPFLREQAVSITNHRFGTPLDLAADLL >gi|292820206|gb|ACYT02000070.1| GENE 62 61128 - 61319 296 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227495859|ref|ZP_03926170.1| 50S ribosomal protein L28 [Actinomyces urogenitalis DSM 15434] # 1 63 1 63 63 118 87 1e-25 MAAVCDVCGKGPGFGKSVSHSHVRTNRRWNPNIQRVRALVNGTPKRLNVCTKCLKSDKVA RAI >gi|292820206|gb|ACYT02000070.1| GENE 63 61521 - 63134 1104 537 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192358|ref|ZP_06609469.1| ## NR: gi|293192358|ref|ZP_06609469.1| hypothetical protein HMPREF0970_01814 [Actinomyces odontolyticus F0309] # 1 537 1 537 537 888 100.0 0 MDLNASVIIEACRAGAEEAARLAPFLDDLDGWDGADCDTGSNGAATMAALEAAMDSLDPR AHLRDALEAAVETIIRRGLGHSGMALGALFEAWAGALGDEHHVTPVVLRRMIAASLSPVA SSIEWSDALAEMLGGAVREIQGLGATLPEVEDVFSRFSSQAQIGLVEATNEATGRIDPGG AFVALVLACIDASMRGDAGILQSFTAMLADLAERHSRAPEAAPPPPGRDFTVDIILEGTQ EDLDALLARLGGLGARLSYVGRVDLFGMGEWRLHVDTSAPLAAHPTSGQVIRFQVCDARP DAQIGIDELADEGLSHRGVRLLQRRPMRRVERARVIACTSAPGLVEDLARAGAVVFLDLS SGDAAGIVSAATSRTGVTLVATCDEASASLVGTVASVLPSPAPGVPAILRAGSRDDLDVL AVARACAPLFVPQPGGVEAAPTLARMLRDGAHDALASCASAPLPPGGDPEGIAEALAEAS RSGGDSWRLLISRDDDGPYTVATVRQLLSTRDASSTIDLETWDGGQSGPSLVAGCAS >gi|292820206|gb|ACYT02000070.1| GENE 64 63122 - 65269 1777 715 aa, chain + ## HITS:1 COG:ML1671 KEGG:ns NR:ns ## COG: ML1671 COG1200 # Protein_GI_number: 15827885 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Mycobacterium leprae # 18 715 15 743 743 430 40.0 1e-120 MRLVSALDVPLSLRLPKKTAKALEGAGVATVGDLLLVAPRRYYHWGRLTPLSSLREGEDV TILAEVAGAHLVANRSSSGVRLEVTLTDGVQFLSATFFAKNQYKLAPIERLLTPGQSFLF AGKVGAYRGKLQLTHPSFEGVDGEDIERIASRPIPIYPATGSLASWAIARAIGMVLDHLD DAHVPDPVPADVRERAGFASHADCLRALHQPETDEDYQQARKALAFAEAFVLQVGLAAQR RGARAVAALASPIDAPLCERFRSSLPFELTDSQREAVAQIGADLAGEVPMQRLLQGDVGS GKTVVALSALLQVVAAGHQGAFVAPTEVLAEQHAASLRALLEPLGADAPDVRLLTGSTTP AARREIQSAMNAAEPLIVAGTHALFQESVRFADLALVVVDEQHRFGVEQRAALRGAREDG RAVHELVMTATPIPRTIAMTVFGDLDDTRMSGMPSGRTPVATYLADSANAAWVERTWARA AEEIAQGRRVYVVCPRIDASDDVADAEEEGARPLASVEEVTAYLRSHPALSGIAIHELTG RTPSPVKAQIMEDFSTGRAPLLVATTVIEVGVDVSEATLMVILDAQQFGLAQLHQLRGRV GRSSLPSLCIAMHRHELTDSGRARLQAFADTTDGFELAEADLRLRKEGDVLGAGQSGTAT HLRFLSVRRDEALIRRAKGEAETLLEQDPMLARHPDLARALRAASDGQIEWMQRS >gi|292820206|gb|ACYT02000070.1| GENE 65 65293 - 65931 193 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 178 12 188 199 79 30 1e-13 MTRIVAGSAKGRTLAVPKSGTRPTSERVREALFSRLDHMNVLDGATVLDLYAGTGALGLE AMSRGGAHATLVEKASAAARVASANVRSTGLPARVVTADARTYLGARNGEALAGDIDLVF IDPPYDIAEEDMTTVLASLGPWIVPDALVVVERSTRAPAPTWPDFLVLEDQRTWGETVAY FAGPPLPKDETADGAQSLEDAQASSSEEEEDR >gi|292820206|gb|ACYT02000070.1| GENE 66 65928 - 66398 256 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 4 151 7 155 164 103 36 5e-21 MIALFPGSFDPFTNGHLDVAERVCAIADRLIIGVGANPAKRGLIAPEERVRLIREATGHL GGVEVILLQGATMDEASRLGATLIVKGVRSSIDVDYEAPQAVFNREIGGVDTWWIPTRPT LAHVSSSAVRELVGLKKDISRYVPPAIERFLTDNRS >gi|292820206|gb|ACYT02000070.1| GENE 67 66402 - 67139 1047 245 aa, chain + ## HITS:1 COG:Cgl2024 KEGG:ns NR:ns ## COG: Cgl2024 COG3599 # Protein_GI_number: 19553274 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Corynebacterium glutamicum # 33 245 4 236 263 64 28.0 2e-10 MPGGTQEAAMADTTDNQTQDEWNEETVYGPSTVIAALDQIEDLVESSRAVPLSASIMVNK AEILDLLDQAREALPEDLVAADAVVADADAVLGRADSAAETRIAEANSRASSILDQANER AAQILADAEEEAERTRSRANDEATALVSQARSDAEATIADANAQAARIISTENIVRMAED RAREIVSEAKRSAASLCEGADDYVASSLDELAHLISDLARRTDAGRRTIAERRGVDVTDV DLTNE >gi|292820206|gb|ACYT02000070.1| GENE 68 67132 - 67698 641 188 aa, chain + ## HITS:1 COG:Rv2926c KEGG:ns NR:ns ## COG: Rv2926c COG1399 # Protein_GI_number: 15610063 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Mycobacterium tuberculosis H37Rv # 6 187 29 204 207 79 32.0 2e-15 MSDNSLTLSLARLPRALGSTLHQDLVWVTPDDLGTPSMSAVPGVPLDVSVDFTSVEDGVL VQLATSVDLIGECVRCLDEVRDHHDVSSAEVYFEADAPALTPSEDDEEVEDLFVIGERDT VDIETQLRDAIVPLVDPRPLCSEDCAGLCDVCGEKWADLPSDHEHFVVDPRLASLASLLG NDAEPGRS >gi|292820206|gb|ACYT02000070.1| GENE 69 67698 - 68420 1059 240 aa, chain + ## HITS:1 COG:Cgl2022 KEGG:ns NR:ns ## COG: Cgl2022 COG0571 # Protein_GI_number: 19553272 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Corynebacterium glutamicum # 14 240 22 246 247 178 48.0 8e-45 MSRAKHLTVPPRTDTEALVEAWGTRIDAPLLQLALVHRSYANEAGGIANNERLEFLGDSV LSIVIAQKLYEQYPDVAESDLSRMRAATVSQQPLAAAARRIGLGDFVFLGKGESMHGGRD KDSILSDTFEALIGATYLTSGLEEARRVILERLSFLLVDAPSRGQHQDWKTILIEYSQAQ GLGEVSYEVEGEGPDHQRVFTARAFVSERPDPIGSGQASSKKHAENAAAQDAMSRLSPEK >gi|292820206|gb|ACYT02000070.1| GENE 70 68466 - 69113 803 215 aa, chain + ## HITS:1 COG:MT3219 KEGG:ns NR:ns ## COG: MT3219 COG2197 # Protein_GI_number: 15842706 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 10 204 3 203 217 158 42.0 6e-39 MSENTSARTRVMIIDDHEIVRRGIAEIVDRDDALEVVAEAGSVADAVRRADLVRPDVILV DLQLPDGTGIDIMNRLRSSHPQILPVVLTSFDDDEALAESLEAGARAYILKTVRGAEITD VIKAVADGRVLLDERTLTRRRVDHEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEK TVKNHITSLLSKMGLQRRTQVAAWVAGQRAASWRN >gi|292820206|gb|ACYT02000070.1| GENE 71 69369 - 72917 5354 1182 aa, chain + ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 945 1178 467 703 744 181 39.0 7e-45 MNLKRMLAGCAVATALVLAPMSAPSFADAAPAPTGVPAAVPLSSTPKIAKWQELQYGMFM HFGVYSVYGGYYNGHRQGMGYPEQIKAWENIPTDDYLLKAKDLAANFDASAICKTVHDSG MKYLMITSKHHDGFAMWDTKTTDYNIVKQSNYGKDPMKELSTECNKLGVKLAFYFSIIDW TKQTPEPYGNVNPIDEDLMTTVIKPQLTELLTNYGPIAELWFDMGGPTAEQSQRMAQWVH ELQPETMVNSRVWNKAGDFEVGGDNSVTTDFHMGPWESIRSIYPACWGYCSWANRDDSAK SYKERELVNNLIGTVASGGQFAYNIGPKGDGTIDAFDAGVVTEVGQWMARHPDAITGARP TWYPAPAWGKVMTKGNDLYFFPELWSPGKTLTLPSVGGHVTAVTVDGTDRSLEFAQDDTT LTVTMSGENPEPNLRPVVKVTFDAAPTYVPTQTVTAVDGATISSEQFFGRASALRYSGAQ AYDAYLVNKTDKAITDLTLKFSGNFDASTTYKITLGATSIEVTGAQIQAGEVGEGLSLEP GKVTPLRLELAHPSYYANSIGLRSVSATLHVYGENAATQPPVIATDPSSVSVKAGESATF TVVASGRPAATIQWYRVPKGASEGTAIPDATNGMYTLTTTFEDDGAQFYAVATNANGSAT SQRATLTVSKGRDNLALNKTATMSSTGWGGTASRAVDGNTDGVWDNGSVAHTGKQANPWW EVDLGETHPLGVVNVWNRSSSDNCQGISCDQRLHDFWVVASETRLDASFNPATAGAVDGV HMIKVDGVGGRPSAVDFEGFDARFIRVIQPTEFGEFALAEVEAFAAAATTPDPGDQEPPV IKPLTVTANPAEDAQISGDGAFRTVTAKEGTQVTIKVEASGKPTPTLFWQIKREGTDSWA IVEEENGPELSLTIDGENNGSVIRVMAMNEAGFAESGLVALALAEEPAPEPEPSPDPTPD PAPTPDPTPDPAPAPDHTVGTWMNDGAGWWWKISAGGYAKNETLTLGGNVYRFDQNGYML TGWVYWDGVWRYHNGAGAQVTGWVNLGGSWFYLTPETGAMVTGWQMVGDKWFFFASNGVM MTGWLYTSGTWYYLDPSGAMHTGWLQMGSHWYLMSDSGAMTIGWKPLGSTWYYFGASGQM ATGWQQIGGAWYYFGTGGDMYTGGHWIGWRWYTFGSDGRWLG >gi|292820206|gb|ACYT02000070.1| GENE 72 73024 - 74670 1591 548 aa, chain - ## HITS:1 COG:MT3218_1 KEGG:ns NR:ns ## COG: MT3218_1 COG2203 # Protein_GI_number: 15842705 # Func_class: T Signal transduction mechanisms # Function: FOG: GAF domain # Organism: Mycobacterium tuberculosis CDC1551 # 10 316 51 375 379 88 31.0 4e-17 MSTDSTDFTLLQAALDLTSSLDLKAGLQNFVDQACALTSSPHATLSVLDTWGATTLQLEF HEDGPVPEVPESLMTAIPASVPLLVNSPSDAPDLDLPASTPPFLGVSILVHEQVYGRLYL CGKAGGYSSADAAVLSALAPAAGIAVENAHLYADSKRTERWISASQSLTTTMLEGADEEE ALELIAKTVREVSHADTAIIVLQSVGDTWAAEIVDGKNASSLLGLTFPPEGRAMSVLHEG TGMIVDSMSRAQTMRVPQLAAFGSALYAPLRSRGVSSGVLILLRQIGAPEFDSSELSLAE SLASQATLALELASARHAQDVAALLDERDRIGRDLHDFAIQQLFATGMALDAAKQKVAAG QTDPAALESLIDSSLASIDEAVRQIRTIVHNLRERDKAVGLVERIRRESSLTRSALGFAP SLLITLDGNAINSDLDNELVVIDEFDGRVDPDLSDDVVAIVREGLSNIARHAHATAAAVC VDVSGRGKSGRVRITITDDGRGIDPSRTRNSGLANMAERARRHRGAFDAGSGEGGVGTQI RWIAPLEG >gi|292820206|gb|ACYT02000070.1| GENE 73 74667 - 76421 1545 584 aa, chain - ## HITS:1 COG:MT1656 KEGG:ns NR:ns ## COG: MT1656 COG1132 # Protein_GI_number: 15841075 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Mycobacterium tuberculosis CDC1551 # 30 536 31 541 576 248 40.0 3e-65 MKLFLTRAESAALRRCISMLDVSRSGFALSLLLGVTSLSATIALGGTAAWLIARASQQPP VLYLTVAATSVRLFGVSRALARYLSRLASHKLALTGMDSLRNNLYDELAAAPGTKLSTLR RGDLMTRAGADVDEVGNVVVKTLLPGLVAAIVGVGTVGVITIISPAAGIILAISLVVSGV IAPALIARSGRLAESQGADARTDIAATSLAILEGATELSMAGTLERARRSLSESEAALSA ALARSARLSAFARGLDVCAMGVAVIGALLIGIPQTTSGVLVQVLLAVIVLVPLSAFEGVA ELTPAAAQLVRSAQAATRICSLLDEETPAQPHDIPEGATVIEARDLAIGWPGGPTLATGI SLTLRPGSSLAIVGPSGIGKTTLLATLTGIIPPKSGSSLINGVPAWGADRDQLTSRITMT AEDAHVFATTIYENLRVARASLTRDEASELLSRAGLVQWVQSLPDGLDTVIGSGGTTVSG GERRRLLMARALAAPAPIMALDEASEHLDAATADRLMETLLTRSPERATLVVTHRLSALD QADHVIVLAAPEPGQCATIAARGTHDEVLQALPAYRWALDQEEQ >gi|292820206|gb|ACYT02000070.1| GENE 74 76418 - 78094 1460 558 aa, chain - ## HITS:1 COG:MT1657 KEGG:ns NR:ns ## COG: MT1657 COG4988 # Protein_GI_number: 15841076 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Mycobacterium tuberculosis CDC1551 # 37 548 19 520 527 326 43.0 7e-89 MRPFDPRLLRYARSARGPIAVTALLGTLTALLVLAQALLISAALSPVVSGTASLTDVWPF IVGIAAVFACRALIVAAREAVSTRAAAAAVRELRGRVVDATVTLGSRWRATKGAETTTLL STGLEDLRPYFVSFLPQLVLVCTVTPAALGVILLLDFWSALIALLVIPLIPIFMILIGRF TQAASEDKLASMKRLTAQLLDLMSGLPTLRGLGREKAPRTHLHALGAANTKATMATLRVA FLSGGVLEFLTTLSVALVAVEVGMRLVFGNISLFHGLAVIMLAPEVFDPLRQVGAQFHAS ANGVTASKAAFDIIEEAEAVDSPGTDECPDMARTDIVLDGLGVRARGAWAPAPTSGVIAP GIVTALCGPSGVGKSTIVLCLLADMTPDAGRVLLRPSASSSESGESVLLDIDPAAWRHQI SWVPQSPTLVPGTILDNMGDLPLDDLNDAAAATGFDDVLASAPDGWNTVIGSGGVGLSVG QRQRLALTRALAAHSQVVILDEPTAHLDAVSEETVVRAIDAMRDAGRTVIVIAHRAAMME AADAVIDVRPAADEEARA >gi|292820206|gb|ACYT02000070.1| GENE 75 78210 - 79331 1676 373 aa, chain - ## HITS:1 COG:Cgl1124 KEGG:ns NR:ns ## COG: Cgl1124 COG1294 # Protein_GI_number: 19552374 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Corynebacterium glutamicum # 1 353 1 331 333 223 41.0 6e-58 MTLSILWFVLIAVLWTVYLILEGFDFGVGMLLPFVAKGDRERTQTVRTIGPHWDGNEVWL LTAGGATFAAFPEWYATMFSGMYLALFLILVCLIIRVMALEWRSKVATEKWRHAWDWAHT ISAWLVPILLGVAFANFVQGMRIEVVDVATGTVIDPTLVNQSLATATHQLTGGFFSLLTP YTILGGLAVMAVCLAHGAQFLALKTTGEVRDRANAIAAPATIAATVLAAAWLLWGQFAYT TNVLAWIPLLVAALAIIASTALSQASLRREGWSFVASSVAIAGAVAWVFASMAPAVQKSS INPAYSLTIDQASSTPSTLTVMTIVTVCLLPIVLVYVFWSYWMFRARVGAEDVETQTGLL LKKIRVGESFFAN >gi|292820206|gb|ACYT02000070.1| GENE 76 79346 - 80893 2443 515 aa, chain - ## HITS:1 COG:MT1659 KEGG:ns NR:ns ## COG: MT1659 COG1271 # Protein_GI_number: 15841078 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Mycobacterium tuberculosis CDC1551 # 8 515 1 485 485 418 46.0 1e-116 MTLAQTALDAVTVGRWQFGVTTVYHFVLVPLTIGLSLLVAIMQTAWHRTGKEYWLQATRF FGKLLLINFALGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAVEALLAFFLESTFLGLW IFGWGRLSKGMHLLTIWCVALGTMFSAAWILAANAWMQHPVGARFNPETGRAELNGVSGF MELITSGVYLSEYAHVITSAWLVAGSFVAGISIWWMVRTAREGSDEAMAQSRNVWRPIAR FGLTAVLIGGLGTAASGHIQGQEMVEVQPMKMAAAEGICVDTDGAAFTIAQFGSCPLGDN GAQPTQFIKVPGVASFMSHNSFTATSEGVADVQERMVELLNSDANFTAKYGDASQYDFRP PQMVAFWSFRFMIGLGMLAFLLAAWGLWATRGGRTSSNKWLSVLALVNLPLPFAAASFGW IFTEMGRQPWVVVPNLQALSAGSDLGSVNMMTDMGISPNVPAGQMLTSLILFTLLYGVLG VMWYILMKRYAVEGIHSSKADKVEDDAPADLSFGY >gi|292820206|gb|ACYT02000070.1| GENE 77 81307 - 84066 2775 919 aa, chain + ## HITS:1 COG:ML1468 KEGG:ns NR:ns ## COG: ML1468 COG1530 # Protein_GI_number: 15827770 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Mycobacterium leprae # 131 701 237 834 924 533 55.0 1e-151 MTTESTTPVAPAASLLFQAPVFQAAPEVAPPAIVEEPEPKRRRKSAAADEESAPREEVAP KSRRRSKKSADEADAVEAPEAPASESESEEAPAEPKTRRRRRSKKADEASAPAQEDADKA DAPAQDSDSSDEEETSGRRRRRRRARSSASSEEGGDPADQVQALKGSTRLEAKKMRRREG RREGRRRHSISESEFLARRESVERTMVIRDQDGLDQIAILEDGLLVEHYVARRTQSSMVG NIYLGRVQNVLPSMEAAFVDVGRGRNAVLYAGEVNWDAVGMEGKPRRIEAALKSGDPVLV QVTKDPIGHKGARLTSQITLAGRYLVLIPGGSMMGISRKLPDKERARLKKILKAVVPSGS GVIVRTAAEGATEEQIRDDVARLTRQWEDIEKKRINTKSAPTLLRGEPELAVRVVRDIFN EDFSKLVIEGRDTYATVKEYVDELSPELSDRVEQWVGTEDVFRAHRIDEQLAKGMDRKVW LPSGGTLIIDRTEAMTVIDVNTGKFIGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIV IIDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSSS CEACEGRGFIVHQHPVETSGAEQPSKGSKGSKKQQKKAEPRRIEDNADHERAKEALSAIA AASTRKEEEGAAEEPAPTKKRRTRAVSTEVKDPEASSVEQVAAPEAPADESASKPAAEKA EESATKRPRRRRRVAESTPLPELPVHLDLPEPVDHSDEPAAPTKDASEIQLPEHREKAPA TRRRASRKAATASSEEPAEAPAPKKTRRRATAQTAVPEVQTDETPATAPVSAPVAEETSV QEPAAPRKTRRRRVAVSTGIVEPDAAPTPVVIDLPARAEVSVPAVPTKSTDDIALPEASD QPRVKRRRRAASTGIVDAG >gi|292820206|gb|ACYT02000070.1| GENE 78 84229 - 84606 383 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229244194|ref|ZP_04368313.1| LSU ribosomal protein L21P [Cellulomonas flavigena DSM 20109] # 20 124 1 105 106 152 72 1e-35 MRQVLGSFEARFRLRIREEMSSNVVYAIVKAGGRQEKVSVGDVVVVDKLAEEIGSSIELQ PLMLVDGDAITVDAAKLGKVSVKAEVVDSAKGPKISIIKYKNKSGYRKRQGHRQKMSVVK ITEIA >gi|292820206|gb|ACYT02000070.1| GENE 79 84641 - 84898 371 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|50842315|ref|YP_055542.1| 50S ribosomal protein L27 [Propionibacterium acnes KPA171202] # 1 85 1 85 89 147 83 2e-34 MAHKKGLGSSRNGRDSNAQRLGVKRYGGQLVNAGEILVRQRGTHFHPGDGVGRGKDDTLF ALRAGAVEFGRKRDRKVVSVSPVSA >gi|292820206|gb|ACYT02000070.1| GENE 80 84974 - 86497 2025 507 aa, chain + ## HITS:1 COG:Cgl2306 KEGG:ns NR:ns ## COG: Cgl2306 COG0536 # Protein_GI_number: 19553556 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Corynebacterium glutamicum # 1 474 1 473 501 454 56.0 1e-127 MADFVDRVTLHAMGGNGGNGVASIKREKFKPLAGPDGGDGGNGGSVILEVSEQETTLLNY HRSPHRRADNGTPGMGDFRQGKTGADIILPVPEGTVVKSMSGELLADLTGAGARYVVAEG GRGGLGNAALASKARKAPGFALLGEPGEERDVILELKSVADVALVGFPSAGKSSLIAALS SARPKIADYPFTTLVPNLGVVSAGDTRYTVADVPGLIPGASQGRGLGLDFLRHIERCAVI VHVLDTAAFETDREPVEDLRIIEAELEAYQGDLTQVEGYVPIMERPRVIVLNKIDIPDGR DLAEITRPDLESFGWPVLEVSAVSHEGLKELSFALAGIVEAERAKRPALEAARPVIRPKA VGRSVEITVRKTRKDGEEVFQVRGDKPERWVRQTDFANDEAVGYLADRLNAAGVEDELMK AGAVAGDTVVIGDLDGGVVFDWEPTLTTGPELLGSRGTDLRLDQNARPSRKERREVYHQV MDAKTAARDELWTERQAGHWTDASDQS >gi|292820206|gb|ACYT02000070.1| GENE 81 86494 - 87621 1006 375 aa, chain + ## HITS:1 COG:Cgl2305 KEGG:ns NR:ns ## COG: Cgl2305 COG0263 # Protein_GI_number: 19553555 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Corynebacterium glutamicum # 4 363 45 403 409 244 44.0 3e-64 MSGVSAASRIVVKIGSSSLSREDGGLDLNRIDSVARLVARWRGADREVVIVSSGAVAAGL DPLGFTSKPKDLPSVQAAAAMGQGLLMARWTAAFQAHHLDAAQVLLTTDDVMRRDHYTNV RASLTRLLGLGVVPILNENDAVTTRELRFGDNDRLAALIAQMIKADALVLLTDVDGLYTA PPDHPGSKLIERVESADDLMSVLVTGAGSRVGTGGMATKVQAAMLASTSGIGVQLASADA LESVLAGKNVGTWFEPSRERPASRRLWIAHVAPSRGEIIVDEGAAQAITVGKKSLLVAGV RSVLGHFEAGDVVDVASPTGLVARGVSGYDSDTLAEIAGSGTAELQAAGHEHPRPAIHRD DLAVLGDAFSALSAD >gi|292820206|gb|ACYT02000070.1| GENE 82 87686 - 88939 1163 417 aa, chain + ## HITS:1 COG:CAC3254 KEGG:ns NR:ns ## COG: CAC3254 COG0014 # Protein_GI_number: 15896499 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Clostridium acetobutylicum # 5 416 14 417 418 377 49.0 1e-104 MTDAARAAARVLANATTQVKNRGLEAIAAALIDRSDQILAANAEDVARGRAEQMSEGLLD RLALTPDRIRGIAEAVREIAGLPDPIGQVVRGMRTDIGLRVTQERVPLGVIGIIYEARPN VTIDAASLALKAGNAVVLRGGSAAQSSNRVLIEVCRDALTSVGLPADAITTVDPWGRAGA RAMMRARGAIDALIPRGGAGLINAVVEESRVPVIETGTGNCHVYVDASADLEAAEAIIMN AKTQRVGVCNAAETLLVHADVAERFLVAAVTRLTTAGVTIHADEATRTVVDGQPSIDAEM IVDATEADWETEYLSMDLAVRVVADVDEAIEHIRRYSSGHTEGIVASDVAVVRAFRSGID AAAIAVNASTRFTDGGQLGLGAEVGISTQKLHARGPMGLAELTTTTWIYEGEGTIRP >gi|292820206|gb|ACYT02000070.1| GENE 83 88936 - 89646 638 236 aa, chain + ## HITS:1 COG:Cgl2301 KEGG:ns NR:ns ## COG: Cgl2301 COG1057 # Protein_GI_number: 19553551 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Corynebacterium glutamicum # 41 235 5 202 218 264 67.0 1e-70 MSTQDNHAEQASDESAIEKTTEATAGATAAPASPQHPPRAMRRRRAIGIMGGTFDPIHHG HLVAASEVMDVYGLDQVVFVPAAMQPFKADRRVTSAEHRYLMTVVATASNPRFAVSRVDI DRGGTTYTIDTLADLSREYPDSDFYFITGADALAQIAQWKDADKLFEQAHFIGVTRPGHN LSDPGLPHESVSLLEVPAMAISSTDCRTRVEEGKPVWYLVPDGVVQYINKYGLYRS >gi|292820206|gb|ACYT02000070.1| GENE 84 89660 - 90085 478 141 aa, chain + ## HITS:1 COG:MT2493 KEGG:ns NR:ns ## COG: MT2493 COG0799 # Protein_GI_number: 15841939 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Mycobacterium tuberculosis CDC1551 # 27 126 27 125 126 93 44.0 1e-19 MSLPDATAELASLVARAAHDRGGINPVLVDVTSKLALADAFVVVSAPTDRQVRAIAEDIM DRIWAEQQRRPAHIEGRAEGTWVLLDYSDLLVHVLSEEEREYYALERLWGDCPAVPIDVD IDEARAAAAERAAAHGVESAQ >gi|292820206|gb|ACYT02000070.1| GENE 85 90082 - 90816 436 244 aa, chain + ## HITS:1 COG:ML1452 KEGG:ns NR:ns ## COG: ML1452 COG0406 # Protein_GI_number: 15827761 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium leprae # 1 230 1 210 224 81 30.0 1e-15 MSASRIVLLRHGQTDFNLARRFQGRIDQPLNEAGRSQAAGAAGVLVSRLCEPSAEVGMIA AEDGRSYDDGGVRIVSSPLGRAVDTARIIARVFDIAGYPCEGPGLDERLTERFYGSFEGK TYEEIAAEQPQAYAQYRAQGECDLAEVERSEVVGERVRDAVLEAARACRGDQSLIVVSHG SAIARGIVSLLGLDPAVFNGLRGVDNCHWSELVPVGMSTSKSAAISGWRLASHNIGSRED ILGA >gi|292820206|gb|ACYT02000070.1| GENE 86 91292 - 93217 2108 641 aa, chain + ## HITS:1 COG:no KEGG:NT01CX_2377 NR:ns ## KEGG: NT01CX_2377 # Name: not_defined # Def: putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase # Organism: C.novyi # Pathway: not_defined # 133 281 199 336 337 68 30.0 6e-10 MSFQLTRTHTSVVLAATTIAAALVVIPTLAEGNATTSDAFCNALSGAEGRIAAEYNPLLA SYAAAAAGNSATPALDPAHESELRAALADAQAALEAAQQSALEPATSAGEAASAADTASR GLDWVDWSQVDDATQARIIEALVIQKMNAYRANAGLPELVVSDTVTTDARAWSKHMSDSD DFNHDPDYKYFGAGKLDGGDTTYAGENIAYNHRENFGDKWGAYGTSKNPMQAADALFDQW KNSSGHDKNMLAQNNVVGVGVHIAKHGNFTRIYGTQKFYAVTGGSPNVSRFHTTGDTASA YGFDGAAFNTDNTNYVSGLAGGGDAQRANSWQNKVGSLPGVALPVDVSSLPANAGSAAPA TSTPAPADTAPSAERQQAVIDTQASVNAAQAALDEYLASAEERKPVTSLVDIDAELDRVA ESIASQTAVRPEKDGGVTLQGGENAGRYLTATEYRDALTRCTTLSVEQDGNNLSVGDGVD STPDQQAPSDETPALANGDENPSVGQEPGQTPAPSVPSAAPSAPANGGGDPASEPSAPAN GDGNPSVTPSAPANGDATPAAPETSTPADDQGAVTARLDITPSADPTQASVPAAQDASTP TQARADALAATGASSVWVGVGAVAVLVAGAGAVVASRRAKR >gi|292820206|gb|ACYT02000070.1| GENE 87 93456 - 94625 1374 389 aa, chain + ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 59 326 468 722 744 224 43.0 2e-58 MRPINLRRSVMAALGAAALVVGPLAPAYAFPAVSSQGGEPVGVAAEVPMGEPAADPTAEP TPDPAPTPEPAPTPDPAPTPEPAPAPKPSWKMDSVGWWYDLDNGSYARDEKRDIDGATYR FNGSGYMVTGWYNLGGAWEYFAPSGAQVRGWANVSGTWYFLDPQSGVMRTGWITVDGTWY YLGASGAMATGWLNQGGTWYYFGASGAMVRGWSAIGGSWYYFNESGAMVTGWLKQGGSWY FLNSSGAMKTGWLSQGGIWFYLNGSGVMVSGWNAIGGSWYYFNESGAMVTGWLSQGGSWY YLNASGVMVTGTQWIGGERHWFYDSGAWWGLYPVASAGNGSGGADVATGNRYKAICHDGS ESFSSPGASDYRGMCAGHGGIAYKLGYGW >gi|292820206|gb|ACYT02000070.1| GENE 88 95270 - 96034 1296 254 aa, chain + ## HITS:1 COG:SP2190 KEGG:ns NR:ns ## COG: SP2190 COG5263 # Protein_GI_number: 15901997 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 25 248 464 671 693 164 40.0 1e-40 MRPINVRTLMIAAVSAAVLAGTVVPANGAELTDPGAPTEVAAEEQPATDGAAAEEQPADD GAAADDGAASWKQDGKGWWFDLGDGTYAKNELIEIDDVVYRFDENGYMITGWHNQEGEWE YFASSGAQAFGWNVIDGSWYFLDPETGFMQTGWINVDGSWYYLNAAGDMAMGWVQYNNEW YYLTGSGAMATGWTQVGGTWYYMNASGVMLIGWVEVEGSWYYLNASGAMVTGTQWIDGER HWFFHNGTWWGAWK >gi|292820206|gb|ACYT02000070.1| GENE 89 96228 - 98795 3769 855 aa, chain - ## HITS:1 COG:ML1486 KEGG:ns NR:ns ## COG: ML1486 COG0308 # Protein_GI_number: 15827782 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Mycobacterium leprae # 5 802 5 812 862 613 43.0 1e-175 MPGLNLTREEATERASVISSVTRYEISLDLTRGDTDFGSFTRIEFDAREGASTFADLVSN NVHSITLNGNTLDPFSVHQDNRIALENLAEHNVLEVEASCQYMHTGEGLHRFVDPADGQA YTYSQFEVPDARRVYTTFEQPDLKSTFTLTVRAPKGWRVFSNAPTPTPEEEGEAWIYHFA TTEVMSTYITAIVAGPYEGTTATLTSSDGRTIDLGVYARASIVEHLDADEIIEITRQGFE FFEGAYGIAYPFTKYDQIFVPEYNAGAMENAGCVTFRDAYVFRTRPTEAQMEARANTILH ELAHMWFGDLVTMKWWNDLWLNESFAEFMSHLALAEATEYTEGWTGFMVRKDWGLKQDQL PTTHPITAEIRDLADVEVNFDGITYAKGASVLRQLVSYVGRDAFFAGLHEYLTKHSYANA TLDDLLSELAAASGRDLASWSKVWLEEAGVTLLRPVVTTSEDGTIERLEITQEAFSEGAS LRPHRMGVAGYSLTEEGTLAQVFREELDIDGASTVIEAAAGIARPDFILVNDGDLGYAKV RLDEESLAFAITHITKFTDSLTRGVVMASAWDMTRDGEMPARDYLNLALRAVPVEDNMSL LTLTLRHIDEAVRTFVAPKYRAEAAEDTGRRLLLLARTAASGSDAQRMLVAAAARNATSP EQFEAIRALYDGTQTLDGLDLDVDLKWDLLIALVRGNAATEEDIAALEATDDTMTGHQNA AAARAARDGEWIKADVWDKVLTDTSIPNDTRWAMISGFWAQARTNPSAYASYVGEYFEAL AGIWETFTFHTAEDLTTLLFPNALAGYAPEVDVVASGKAWIEAHADASAGTIRIIRELID VCERQIANQVVDAAG >gi|292820206|gb|ACYT02000070.1| GENE 90 98935 - 100956 2476 673 aa, chain - ## HITS:1 COG:ML2613 KEGG:ns NR:ns ## COG: ML2613 COG3590 # Protein_GI_number: 15828409 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Mycobacterium leprae # 10 673 10 666 667 610 49.0 1e-174 MTNTLLARVLDTANIDSTVRPQDDFYRHVNGTWLATHTIPADRPMDGAFHTLRDASEKYA RAIAQDAADGTLDDPDAHRIATLWTQFLNEDTIEEAGAAPLRPDLDAINACTTHEELARE MGRLMREGIGGLIGAYVGTDPHDSSRYMVSLVQSGIGLPDEAYYREDDYAPIREAYVAHT ARLLSLAGMADPEGAAARIMELETAIASHHRDSVSNRDPLLSDNPTPWEEIAARAPGFDW DAWAEGARMPVAGLVMNVDQPDFLSAAAALWADTDLSVLKEWLSASVIDCHASLLSRDFV NENFDFHGRTLSGTEELRPRWKRALGLIEAYLGEAMGRAWVARHFPPDAKETMDALVRRL LDAYGESIRGLDWMSEDTKVKALDKLATFNPKIGYPVKWRDYSTLHLDPEATIVENVRAA NAHATDREWAKLGRPVDHDEWYMTPQTVNAYYNPTQNEIVFPAAILQPPFFDTEADDAVN FGAIGAVIGHEIGHGFDDQGSRYDGAGNLSNWWTDEDRAAFEERTHALIEQYDALTPAIL LEQDEESEEGDERTLPHVNGALTIGENIGDLGGLTIAWKAWAASLAEQGLTPQSAPVIDG ITGPQRFFYSWARAWRTATRPQFARQMLAIDPHSPAEFRCNQVLRNLDTFVEAFNVTPGD AMWLEPSQRVTIW >gi|292820206|gb|ACYT02000070.1| GENE 91 101223 - 102809 1829 528 aa, chain + ## HITS:1 COG:YPO3826 KEGG:ns NR:ns ## COG: YPO3826 COG0578 # Protein_GI_number: 16123961 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Yersinia pestis # 4 521 8 540 551 350 38.0 3e-96 MKTLRTDVCVIGGGSTGAGVVRDVAMRGFSAVLVDRADIAQGTSGRFHGLLHSGGRYIAS DPESATECAEENEIVKRINANAVEATGGLFVVTAHDDEEYADQFLARAAAAKVPAAEISI AEALRREPRLDPRIKRAFEVQDGTVDGWQMTWGAIRSAQAYGAQVLTYHRVTSIEREGER ISAVIVHDERGGEDVRIECGFVLNCGGPWAGQIAAMADCHGVDVVPGAGIMIAMNHRLSQ SVINRCVWPADGDILVPDHTVCIIGTTDLKADDPDRLSIPADQVQQMLDSGEAMIPGFRK SRAVHAWAGARPLIKDSRVSATDTRHMARGMSIIDHNTRDGVYGMLTIAGGKLTTYRLMA ERIVDIMCEEMGEKRACKTADEAVPPAKEERLYTIGHRLDNVESRNESPSHEQIICECEM ATRAMLENVMDTLPKGQLDDVRRQMRLGMGPCQGGFCSQRAAGIAHERGDIDSMRANSLL RLFLKNRWIGLWPIMFGKQARQAALDAWIHEGTLDVEHLPAPSEEVVR >gi|292820206|gb|ACYT02000070.1| GENE 92 102806 - 104056 1540 416 aa, chain + ## HITS:1 COG:glpB KEGG:ns NR:ns ## COG: glpB COG3075 # Protein_GI_number: 16130177 # Func_class: E Amino acid transport and metabolism # Function: Anaerobic glycerol-3-phosphate dehydrogenase # Organism: Escherichia coli K12 # 24 413 25 413 419 122 29.0 1e-27 MRDVVVIGAGLAGLAAAIKAADAGLSVTLVTKGVGGIQLGTGTVDILGYRPEPVEAPLEA LEGHVASRPTHPYSHVTPDFVGASVAWLRDLVGADALIGDETRNARIPTGVGALRPTCLI PPSMEAGIPQAGARYAIVGLTRFKDFYPGLVAENLTRQNGPDGAPINARALSVDYVVREG EVDSTGTNHARSLDHEENRARLADQIRPLLQDGEIVGLPAVLGLDDPNAWRDLADKLGHP VFEIPIQPPSVPGMRLNALLTRIASDKCRVILGSPIKAVHTADGRVSAVEYASAGRSTIV ETRSLILAAGGFESGALDMDSYGTVRETICGLPVMGASGQLLHADFWGEDQPLFLAGLAV DDNMRVLNEEGAPVCPNLYAAGGNLAGATRWREKSGEGIALASALAAVDSIVEELK >gi|292820206|gb|ACYT02000070.1| GENE 93 104053 - 105336 1654 427 aa, chain + ## HITS:1 COG:ECs3128 KEGG:ns NR:ns ## COG: ECs3128 COG0247 # Protein_GI_number: 15832382 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 30 421 5 394 396 257 35.0 4e-68 MTLEMSTLMGPGVEEEDVFALTGDAALRASLDSCVKCTICETQCPVMRVTDLFAGPKYSG PQAERFRKDGQMVDKSIDYCSSCGTCSLVCPQGVKVTEIIHHRRTAMKEAHGIPLRDRLI GRTSLIGTMMTPVAPIANWALDVKPIRLAMEAVIGVHRSAPMPRAYGRTFESWFKKHKPL ANSGTRGQVIFFHGCAGQYFEVETSIHSVMVLEHLGYEVLVPKHGCCGLALQSNGLYDDA RKYVSKLTNDLRSVNRDAPIISASGSCGGMLRHEAHEILEMDTPELRDVGSRTWDISEFL LHLYDKGELDTNFQRIDVTIPYHAPCQVKSQGLGKPAIELMSLIPGVTVKDSEQPCCGIA GTYGMKKEKYAIAQAVGAPVFDFIKQVNAELAACDTETCRWQLRTATGANVVHPIWLIHK AYGLPNG >gi|292820206|gb|ACYT02000070.1| GENE 94 105594 - 106154 527 186 aa, chain + ## HITS:1 COG:MT0502 KEGG:ns NR:ns ## COG: MT0502 COG4221 # Protein_GI_number: 15839874 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Mycobacterium tuberculosis CDC1551 # 11 175 77 241 251 139 52.0 4e-33 MAAHILEGGPVDAVVNNAGGAIGVDRVAEGDPARWSAMFERNVLTALHCSRAFLPGMRER GGDLVFLTSTAAHDTYPGGGGYVAAKHAERIIANTLRQELVGEPVRIIEIAPGMVRTEEF SLNRLGSQEAADRVYEGVAAPLVAEDVAEAIVWTLERPSHVNIDSMIVRPVAQATNTLVA RNTAVE >gi|292820206|gb|ACYT02000070.1| GENE 95 106236 - 106721 524 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192393|ref|ZP_06609504.1| ## NR: gi|293192393|ref|ZP_06609504.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 161 1 161 161 250 100.0 2e-65 MSIKARPTILFATATALALSTCGATSSPSTPAASAGSSSAAASTDGSFTLLNGLIPVPTG SRSYSKKGDLLSQTTESDKSLRIEEWTKVSLPNLDGTHEIVKTLRLSPDGTRMALLAPFK KLEDDISYQLYSTPVGGGEATQLTKATGIAGGKHVILAWSV >gi|292820206|gb|ACYT02000070.1| GENE 96 106921 - 107598 533 225 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192394|ref|ZP_06609505.1| ## NR: gi|293192394|ref|ZP_06609505.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 225 12 236 236 234 99.0 2e-60 MADDNKNLAGDTERTSILPQSEAQVTEQTEVLPAHVAQAETAQMPPLAQEETSKAFAGTP LESVAEASVDDHAGDEAVAASVATLEPAPKKTSWSKRAAIAGAAAAVLCVGFGAGIITHA AVMGDGQDFYEQGYEDGVSDQGYGDEDEEFGPGNGQQGSGNGQQRGPGGQQGPGSGQQQG PGGEQGDTGSTRPGPPPEGGRGPGSKNGSQGSEDSSTQGEGTTAS >gi|292820206|gb|ACYT02000070.1| GENE 97 107640 - 108440 771 266 aa, chain - ## HITS:1 COG:Cgl0053 KEGG:ns NR:ns ## COG: Cgl0053 COG0730 # Protein_GI_number: 19551303 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 25 265 28 247 248 76 34.0 5e-14 MIVEALLIGAFVGIVVGSLGAGGGILSVPILVYILGQDPHQATGLSLIIVGLTAAVSLAT RARSGNVAWREGALFALAGLVGTWAGSALGPLISARALMLSFCALLGAVAVFMVRSQIRP SASSSSDEAGDTKVDKGTWTLTTAFRVVALATLTGFLTGFFGVGGGFAIVPALHLALRYP MKRASATSLLVMVITAAFGLASRTLAGTLTITAEAGVMITLFTAASMGGGIVGAKLTKRV SNRVLGLVFAALLVCVAVSTLAATLA >gi|292820206|gb|ACYT02000070.1| GENE 98 108444 - 109703 1265 419 aa, chain - ## HITS:1 COG:MA2647 KEGG:ns NR:ns ## COG: MA2647 COG0641 # Protein_GI_number: 20091470 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Methanosarcina acetivorans str.C2A # 1 401 1 393 446 354 43.0 2e-97 MTRSIPFSVVTKPTGAACNLDCQYCFFLSKELLYDAAAQTMSEQTLERYVEAFLESSPDG EVTMLWQGGEPTLRGLPFFERLIQLCERYRRPTQRVRHALQTNGTLVTYDWARFFADHDF LVGVSIDGPAPLHDAYRLNRGGRGTHAMVVRGWEALARAGVETNILCTVNAANEEHGEEV YRYFRDDLGARYLQFIPIVERVRAGDLAQAERGWRSGTSALLYRQDGDCVTSRSTSPASY GRFLCEVFDQWLAADVGEVFIQDVDSTLSAMFGSATVCVHAPQCGANMAMEFNGDVYACD HWVEPDWLVGSINSSSFTQLAASETMRDFARLKPSLDDECRACPHLRLCWGGCPKDRFVR RGESSHNYLCEGYRAFYEHATPALRAMGMLIAAGRPASDIMDPAVSTSLGLSLTTSIRK >gi|292820206|gb|ACYT02000070.1| GENE 99 109700 - 110917 662 405 aa, chain - ## HITS:1 COG:BS_xylR KEGG:ns NR:ns ## COG: BS_xylR COG1940 # Protein_GI_number: 16078822 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Bacillus subtilis # 37 339 5 316 350 93 23.0 8e-19 MHYPTRRPLPTLEDRIVAHLAKAPATRSQLCEALDTSRTNLGRALTTLLDEGSVTPMRTN APGRGRPTQLLTLNSSAAHCVGLNVTRTSCAGVMLSRAGTVLAAVHIVSPASPSLQLSLE QTCEALAASAARQGIDTSTVRAVGVGVPIPMGRNARLSSDAYPTMEELSKLTRRWWDPLP IVDNTVRMAALAEALWGAGADMSSFIYLRLSGGVGGCVVSDFRLVGGAGGLAGELGHMTV GANDSPCACGKRGCLETLASVPALCEHAGVADITQLRAAVLSGDTRARDALERAAQAVGY VLGSAALLINPRAIIVAGEIVDAFPSLRSDIAAAMYSELIPVMEWDIDVVGASLGPLGAA QASAYIAARPFEEDGAATHLPEGGSPREAGPASSMEARAGRGGRP >gi|292820206|gb|ACYT02000070.1| GENE 100 111074 - 112594 2069 506 aa, chain - ## HITS:1 COG:PM0598 KEGG:ns NR:ns ## COG: PM0598 COG3119 # Protein_GI_number: 15602463 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Pasteurella multocida # 28 487 2 465 467 226 29.0 1e-58 MTDTTRDIPDNVRNVLVIMTDQHRTDTIGCLGNPHAQTPVIDAMGESGFAFTHCFTPTAI CTPARASLLTGKRPGKHQVLANPEWNIAYQVSIPEGTWTYTQELRDAGYNVGIVGKYHCG YNLPDKFGADDDTYWGAENPVANEKYVAWLEANNLPPVRAHDLWRGKLPGGRDGHIIAAR LDQPEEATFERFLADRAIEKLREYAADWKDSKQPFCLDVHFFGPHLPYFLPDEWFDLIDP NDVELPENFGDSLIGKPPIQENYATYWSTSSFTNEQWKKLIAVYWGYTAMIDFEIGRIMD VARELGILDDTAVFFCADHGEFTGSHRLNDKGPMMYDDIYNVPFIAHIPGVSTVGRSDAF VSLIDLPATVLDIAGLDTSLVEDGRSIVDLTRGGQVEGWREDIVCEFHGHHFPLQQRMLR TRDFKLVINPESINELYDLRLDPAEMNNVYTVPVYDEIRRELATNLYLQLRERGDHSFAK WMAAMTDFDIPLVNTARSDLDEVTSD >gi|292820206|gb|ACYT02000070.1| GENE 101 112635 - 114083 2155 482 aa, chain - ## HITS:1 COG:sll0771 KEGG:ns NR:ns ## COG: sll0771 COG0477 # Protein_GI_number: 16331319 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Synechocystis # 16 475 15 468 468 243 35.0 4e-64 MSSTTTLTPRDKQARRYATTLALIATLGPFFYGFEGMVLNAAIKAVGSTFELGPILQGVA GAAGVIGGLIGALAAGRISDKIGRKTTLMWVGPFLLVEALLGPISPLLGSLGYPFLLLTR IIGGIGFGAATTVAPGYVAEIAPADIRGRLIGFRQLAIILGLFFAGLINTAVVSITGGAA KPAFGGLMTWQVLFACLIIPALLFVVFTAKIPESPRYLVSVGRTKEAEEILAKLSGEEDP AARVEAIAQSLTITGGAKLSIGQILSSQWRGLVFVGMAIAAFQQLTGINGVFFYSNSLFA AVGFTESMALAQTLLITAFKIVGVLSGIMLVDRVGRKRMLIYGGTLIFVSLGIVATVFTV APTIDGKPDVADSPVLAFLAVAALCTFLLGFTSSWGPIFSIVMGEMFPNSIRGGAMSLAS GADFLVNFLVVLLFPFLIAWSPAGTYWIYCAFGVLAVIFTAKFLTETSGAELEDMDKVVA QK >gi|292820206|gb|ACYT02000070.1| GENE 102 114218 - 115081 730 287 aa, chain - ## HITS:1 COG:no KEGG:CYA_1336 NR:ns ## KEGG: CYA_1336 # Name: not_defined # Def: hypothetical protein # Organism: Cyanobacteria_CYA # Pathway: not_defined # 97 280 47 221 225 69 30.0 1e-10 MKLIDRIAPVLESLSLASLGGVLLWLAMSGRYASFVPPSARLGIIASSIGLFACALALSA RIDAGEHKSADTATSYRAMTRSLVALLAAALLILPFRVSPSELAAGAIGARPTSGGSTID ADTDDSTEDTPGTSNDAANGGTNPASGSGSQNAGAGQASSSGKLELTTDNFYSQVEEMIA NGRAHDGQRVELTGFVLSAEAASAQASIPRVTDEESFAVARMAIWCCAADAYPVGFAVRW AGPAPAADSWVHVSGTLRVRGGKALVIDADSVTPAQTPNPEFVVQTR >gi|292820206|gb|ACYT02000070.1| GENE 103 115078 - 116079 878 333 aa, chain - ## HITS:1 COG:CAC1592 KEGG:ns NR:ns ## COG: CAC1592 COG0701 # Protein_GI_number: 15894870 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 44 318 50 352 367 151 31.0 2e-36 MDTKRPARPWSVLVGALVLVALIAVWAAQGTLAGSGVPVGRAATIAVGMTLQAIPFLLLG VFVAELIEAFVSPALIARVFPTNPVASVLTALVAAFLLPVCDCSAVPIFRSLLRKGVPLS AATTLMLASPAINPLVIASTYYAFGSWAIVGARIGLSIIVALSVGLSMLASPPSALREEA HLHDGDSCGCDGGCETPDRSFSGILGATGHSFGRILPYLLGGVAASTAAQVFWPVSSLLA GLPAPGALALMMAAGFALSLCSSSDAVIARSLASLAPQGALMGFMVYGPMMDVKNVALLS SQFRGAFVLRLFATVTCIAAAVIGGAWWMGVLA >gi|292820206|gb|ACYT02000070.1| GENE 104 116483 - 119758 4729 1091 aa, chain + ## HITS:1 COG:MT1587 KEGG:ns NR:ns ## COG: MT1587 COG0060 # Protein_GI_number: 15841003 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 18 1090 13 1040 1041 1211 57.0 0 MTKHGFYPRHRQDEVDPSPSFPAMEEGTLAFWANNDTFRKSIEMRDAGENGSNEFVFYDG PPFANGLPHYGHLLTGYVKDVVGRYQTMKGHRVERRFGWDTHGLPAELEAQRQLGIEDVT EITREGGVGIEAFNAACRSSVLRYTKEWEEYVTRQARWVDFEHDYKTLDMSYTESVIWAF KQLYDKGLAYQGHRVLPYCWNDRTPLSNHELKMDDDVYQDRTDNTVTVGLRLETKLREDS ARPELALIWTTTPWTLPSNSAVAVGPEIQYSLVEVAADHEGVLAGERVLIATDLIPAYAK ELGEEPTVVATYKGSELVGIHYHPIYDYFDTPERRAEGGAPGPNGWSIIAADYVTTTDGT GLVHQAPAFGEDDMWTCMEYGIGVVLPVDEGGVFTSEVSDYEGMQIFDANRYVVADLREQ GGPIARRAPEIRAVLVREKSYVHSYPHCWRCRKPLMYKAVSSWFVRVTEIRDRMVELNQE ITWTPSHTKDGIFGKWLEGARDWSISRNRFWGAPIPVWVSDDPAYPRTDVYGSIAELEAD FGVKVTDFHRPFIDSLTRPNPDDPTGKSTMRRISDVFDCWFESGSMPFAQVHYPFENQEW FENHYPGDFIVEYIGQTRGWFYTLHVLATALFDRPAFRSCVSHGIVLGDDGLKMSKSLRN YPDVAEVFNKYGSDAMRWFLMSSPVVRGGNLIVKEESIRDTVRQVLLPIWNTYYFFTLYA GACNKGEGYEASRIDLSSPEAVAALAQMDRYLLAHTRTLAEDVRGALDGYDVAGACEAIR DYLDVLTNWYVRTQRQRFWDEDGAAFDTLYTALVTLMELAAPLLPLLSEEIWRGLTGGES VHLVDFPVIDEAVDAPELVAAMDEVRSIVSAAHALRKTHQLRVRQPLASLLVVSEDFAAL EPFADLIASEVNVKSVVFSAPQDSGLSVRTELALNPRAFEPAVRKLTSQLFKAQKSGEWE VVDGECRFGSVELDGAPLVLTGDMFSVSTSVDAAEGQVADVLASGTFVVLDTELTPELEA EGYARDVVRAVQDERKNAGLHIADRIDLSLTVPAEHVADVETWRDMIATETLALSLTVEA GDKLAVSVAKH >gi|292820206|gb|ACYT02000070.1| GENE 105 119841 - 120431 678 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508969|ref|ZP_02044611.1| ## NR: gi|154508969|ref|ZP_02044611.1| hypothetical protein ACTODO_01485 [Actinomyces odontolyticus ATCC 17982] # 46 196 1 151 151 280 94.0 4e-74 MLGKLEELIGKICSDTSVAKADFQQGYGYGYSFSTYNTDFFTVWEMSGYYRFSWSERHPS WRFTMDTRNETLASYVLVTQVGALRRARLRQRPIVIPGEAPSPQQWTIADTRWPRVKRYT SATDPTMVVESVNSLELRQTLFATQFPLEDYVDSFMDPDANPVLAPYLSSVEPHLEHLRH AGVKLPSDADYLEGTR >gi|292820206|gb|ACYT02000070.1| GENE 106 120373 - 121083 622 236 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192405|ref|ZP_06609516.1| ## NR: gi|293192405|ref|ZP_06609516.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 236 1 236 236 484 100.0 1e-135 MQLETPSPDDKRRTVHQTHIFPTRGPGPGDVLPNAAQGLGERYRCGADVTGAMELQMAEG TDPHIRSTADWMRSRFSQPGTICPVWRDDRDHGEIPGTNRYFRDKDEFIEAFDIEGLDHI GHVGARNLTPIIKGLIFPSEFRSGPPANYNELYRQFRFTENPLPEDVAIEICLLDEDMGS HGQVPQVRIIEKVMIGGWAPMTIDELITQNIIEGVSEHVGEIGRIDWKDLFGYFRR >gi|292820206|gb|ACYT02000070.1| GENE 107 121074 - 121721 535 215 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192406|ref|ZP_06609517.1| ## NR: gi|293192406|ref|ZP_06609517.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 215 1 215 215 319 100.0 9e-86 MHLEGHHEDGGWLLSTFTLTNRVSWEMMLQAVYAAFEYFADITIFVDDQSVKLESRADVL SIPEARSIGIAGESVVVKEPMIIIFYNQVHFINLRIRCGNDDLRDLDYEGFNKIVCPIVD AIELAMYQEPVPTPVKDDATEETEDAEEEKRAEASAAEPPIPPPPATEPQDSVTPADVPA PGAEPPIPLPPAEASAPPIPSPAPAPRKRSEFRCN >gi|292820206|gb|ACYT02000070.1| GENE 108 121760 - 122170 483 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192407|ref|ZP_06609518.1| ## NR: gi|293192407|ref|ZP_06609518.1| hypothetical protein HMPREF0970_01864 [Actinomyces odontolyticus F0309] # 1 136 1 136 136 273 100.0 2e-72 MLLAGLTEEPGWIRSSFNLTYRVPWEKLTQGVRGVYPYIEDAEVQVDGEPLHLSAPEDLL AIHEASSVMIRGMSPILKAPIMLTFFNQKPFVNVAIGRVNEEFQTTDYEKFNKSMCQFMD SIEIMMHVPPATLPKG >gi|292820206|gb|ACYT02000070.1| GENE 109 122253 - 122633 520 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508965|ref|ZP_02044607.1| ## NR: gi|154508965|ref|ZP_02044607.1| hypothetical protein ACTODO_01481 [Actinomyces odontolyticus ATCC 17982] # 1 126 6 131 131 190 97.0 2e-47 MIYFRRQHVGKWFGQASEIEELRAENQRLKEQVATLEARLRAAYADAGVAALAGSSFPSP EAAVPQASVPAFPAGAPNPTTASFPELSAAELQMIAEGRVLNAIKAYRDRTGVDLKTAKA AIDAAR >gi|292820206|gb|ACYT02000070.1| GENE 110 122842 - 124512 1901 556 aa, chain + ## HITS:1 COG:Cgl2324 KEGG:ns NR:ns ## COG: Cgl2324 COG0285 # Protein_GI_number: 19553574 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Corynebacterium glutamicum # 103 555 39 506 507 362 48.0 1e-100 MAGESFFGQDPTHEDQQGGIPADLIPYLEAADEVEDTEAGEGTDPQAEESEREAALRALV EHSLLVGPDPSVLAEIEGEVDEDFADDAVEARDERASHEAALAKAEEDVALDARVQEIYQ SIVARAPEHDIDPTLDRVTLALDILGDPQNSYPSIHITGTNGKTSTSRMIDSLLTAFGMK TGRFTSPHLLDVRERISLEGHPITREGFVRAWEDIEPYVGMVDERSAQEGGPRLSFFEVF TIMAYAAFADYPVDAAVVEVGMGGRWDATNVIDAGVSVITPIALDHTKWLGSTIEEIARE KAGIIKPGQVVVIMAQEEEVLDILLEQARSVDAIARVEGRDFEVVDRQMGVGGQMVTIRT PSAVYEDVFVPLFGQYQAHNAAAALVAVEAFMGGRGLDGRIVEQGLMNASSPGRMQVVRH SPTIIVDAAHNPAGAATLREAVESSFGFARIAGVYAAMGDKDVEGVLSEVEPFIDHLVVT QMPGERAADIARLAEIAEEVFGPDRVDVRESLADAVDRAAEIAEAGAEPADRSGVLVFGS VMLAGEMLALAGHSPR >gi|292820206|gb|ACYT02000070.1| GENE 111 124632 - 125624 1412 330 aa, chain + ## HITS:1 COG:ycgT KEGG:ns NR:ns ## COG: ycgT COG2376 # Protein_GI_number: 16129163 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli K12 # 1 328 11 361 366 351 51.0 9e-97 MKKLVNDVHAVVRETLEGFALAHPDLVDVHYSPDFVTRHVPKAEGKVGLVSGGGSGHEPL HAGFVGEGMLDAAVPGAVFTSPTPDPILEATKAADHGAGVLHIVKNYTGDVLNFETAAEL ADMEDIKVSSVVVNDDVAVEDSLYTAGRRGVAGTIFVEKIAGAAAERGDSLEEVTRIATK VNDQTRSMGLALGPCTVPHAGKPSFDLGEDEIELGIGIHGEPGYRRGAMETADSLVAELY ERVREDLGLAEGERVVALVNGMGGTPVSELYICFRALAALLKKDGIKIARQMVGNYVTSL EMPGVSVTLMRADDELLELFDAPVNTVAWK >gi|292820206|gb|ACYT02000070.1| GENE 112 125653 - 126294 755 213 aa, chain + ## HITS:1 COG:lin2844 KEGG:ns NR:ns ## COG: lin2844 COG2376 # Protein_GI_number: 16801904 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Listeria innocua # 1 205 1 194 198 161 45.0 7e-40 MSLDAAWARRWIELAAADVAEQRDYLVDLDRAIGDGDHGENMDRGFKAAVEALGQAQPGS VAEVLKTVAKTLMSTVGGAAGPLYGTAFLRASKAAGDGELDGAGVAAVIAGALDGIQARG KATTGEKTMVDAWTPALEAARAAAESGSDGAAVLEAAATAAEAGAAATEPLRATKGRASY LGERSIGHLDPGAVSTSLILRAAVRAAGEAGAA >gi|292820206|gb|ACYT02000070.1| GENE 113 126291 - 127049 686 252 aa, chain + ## HITS:1 COG:lin2845 KEGG:ns NR:ns ## COG: lin2845 COG3412 # Protein_GI_number: 16801905 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 8 123 8 115 124 75 39.0 8e-14 MSVRVSFVIVSHSASLAKGVCELAAQMAPDVHFEAAGGTDDGRIGTSYDLVETALEAALA AVDGEGSGVIVLTDLGSATMTVESVIDMSDEPERVRFVDTCLVEGAVASSVRAQLGEDLD QVADVAAALAPRVDDVPAQEAPRPAPAKLSGAGGGSPASSMWAQGDAVVADPVGLHARPA AAFVRLAGTFDAEVTVNGADGGSVLELMALGITQGQSVHIEANGADATAAVAALTDMLES ATEQPSSSKETM >gi|292820206|gb|ACYT02000070.1| GENE 114 127046 - 127516 725 156 aa, chain + ## HITS:1 COG:MT2521 KEGG:ns NR:ns ## COG: MT2521 COG0105 # Protein_GI_number: 15841969 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 19 153 3 134 136 144 55.0 6e-35 MSAKSVLLEPQHLLDPTLEHTLIVVKPDGYARGLTGEILRRIEAKGYTIKGLKLMIASRE LLAEHYADHKDKPFFEGLLEFMSSGPVVAIIVEGQRVVEGMRVLMGSTDPTTAPAGTIRG DLGRAWNSPHMENLIHGSDSVDNATREISLWFPEIY >gi|292820206|gb|ACYT02000070.1| GENE 115 127537 - 128965 1347 476 aa, chain + ## HITS:1 COG:ML1629 KEGG:ns NR:ns ## COG: ML1629 COG1196 # Protein_GI_number: 15827858 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Mycobacterium leprae # 1 405 1 405 1203 317 51.0 3e-86 MYLKNLTLRGFKSFASATTLVLQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPAR LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHRRRKERALKK LADMDANLVRVLDLTNEIHRQLGPLARQARVARRASLIQARVRDAKARLLADDLASALSK LSVLEASDESAAARRSSLEEQIAAARAELARLEDAERASSPALEQASSDWQALTTITERL RGTLMAATQKVALRATPELPPGGEDPNVLDERARVAGAEDAALAGQVEAARSALTSATRA REAAEDADDSASRELARVNRVIADHREKVARLTGDASTAASRLEAAIAEADRAWSAYRAA QERAEAAEKAVPASSVGSVGVDASVAEGATPEEEADGGAARAHAEASARRDAARAR Prediction of potential genes in microbial genomes Time: Tue May 17 07:07:15 2011 Seq name: gi|292820204|gb|ACYT02000071.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.5, whole genome shotgun sequence Length of sequence - 122 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue May 17 07:07:16 2011 Seq name: gi|292820202|gb|ACYT02000072.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.6, whole genome shotgun sequence Length of sequence - 709 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 708 650 ## COG1196 Chromosome segregation ATPases Predicted protein(s) >gi|292820202|gb|ACYT02000072.1| GENE 1 3 - 708 650 235 aa, chain + ## HITS:1 COG:ML1629 KEGG:ns NR:ns ## COG: ML1629 COG1196 # Protein_GI_number: 15827858 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Mycobacterium leprae # 10 234 511 731 1203 58 33.0 9e-09 GTAELLGRPGVLGQVAPLLHVTPGFEDAVAAALAPFADAVVVDSLARGLGELDAARAAGR SLRLVVASDSSGPSDGPADGISEAVRADLPEGATWLANVIACEGAAAPLASLLDGVVACS LEAAADVLDVPGVRAVVTSGGDVLRSWSVEGGRQASSVLSVRADYEEACAQAEAAQARMA EVSEQLSEANANLDRCIREANDALKALREEDAQRAKEAQELARAQSAAQAARAEA Prediction of potential genes in microbial genomes Time: Tue May 17 07:08:00 2011 Seq name: gi|292820081|gb|ACYT02000073.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.7, whole genome shotgun sequence Length of sequence - 126771 bp Number of predicted genes - 114, with homology - 109 Number of transcription units - 45, operones - 27 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 996 1246 ## COG1196 Chromosome segregation ATPases 2 2 Tu 1 . + CDS 1098 - 1385 310 ## gi|293192576|ref|ZP_06609530.1| ribbon-helix-helix protein, CopG family - Term 1950 - 2002 1.1 3 3 Tu 1 . - CDS 2124 - 2309 87 ## 4 4 Op 1 . - CDS 2428 - 2937 294 ## 5 4 Op 2 . - CDS 2942 - 4102 354 ## COG1479 Uncharacterized conserved protein - Prom 4186 - 4245 1.7 6 5 Tu 1 . - CDS 4252 - 4695 192 ## 7 6 Tu 1 . + CDS 4765 - 5076 208 ## gi|293192582|ref|ZP_06609536.1| putative 2-hydroxy-3-oxopropionate reductase + Term 5231 - 5279 -0.9 8 7 Op 1 . - CDS 5111 - 5491 367 ## HMPREF0675_3721 hypothetical protein 9 7 Op 2 . - CDS 5488 - 5682 235 ## gi|293192584|ref|ZP_06609538.1| conserved domain protein 10 8 Tu 1 . - CDS 5839 - 6072 214 ## Sros_7085 hypothetical protein - Prom 6155 - 6214 1.8 11 9 Tu 1 . + CDS 6293 - 8410 3175 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 12 10 Op 1 . + CDS 8515 - 9534 966 ## Cfla_2054 GCN5-related N-acetyltransferase 13 10 Op 2 . + CDS 9553 - 10575 1175 ## Bcav_1925 GCN5-related protein N-acetyltransferase 14 11 Op 1 4/0.000 + CDS 10794 - 12260 2006 ## COG0477 Permeases of the major facilitator superfamily 15 11 Op 2 . + CDS 12253 - 13203 1240 ## COG0524 Sugar kinases, ribokinase family + Term 13222 - 13285 10.1 + Prom 13281 - 13340 3.1 16 12 Op 1 . + CDS 13400 - 13894 370 ## gi|293192592|ref|ZP_06609546.1| conserved hypothetical protein 17 12 Op 2 . + CDS 13912 - 15456 1138 ## gi|293192593|ref|ZP_06609547.1| PE_PGRS family protein 18 12 Op 3 . + CDS 15468 - 16649 652 ## COG1404 Subtilisin-like serine proteases - Term 16652 - 16714 18.4 19 13 Tu 1 . - CDS 16730 - 19201 2916 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 20 14 Op 1 . + CDS 19269 - 19805 581 ## Arth_1629 hypothetical protein 21 14 Op 2 . + CDS 19798 - 20946 1024 ## COG1524 Uncharacterized proteins of the AP superfamily + Term 20966 - 21013 9.1 - Term 20954 - 20998 8.3 22 15 Tu 1 . - CDS 21012 - 22262 1322 ## Cfla_1698 DNA-binding protein - Prom 22302 - 22361 1.6 + Prom 22322 - 22381 2.1 23 16 Op 1 . + CDS 22429 - 22731 424 ## Jden_1411 hypothetical protein 24 16 Op 2 . + CDS 22741 - 23373 953 ## Achl_1630 hypothetical protein 25 16 Op 3 . + CDS 23375 - 23755 426 ## Caci_2022 nucleic acid binding OB-fold tRNA/helicase-type 26 16 Op 4 . + CDS 23755 - 24429 638 ## Bfae_14520 hypothetical protein 27 17 Op 1 1/0.545 - CDS 24372 - 25076 881 ## COG0569 K+ transport systems, NAD-binding component 28 17 Op 2 . - CDS 25079 - 25744 630 ## COG0569 K+ transport systems, NAD-binding component 29 18 Op 1 2/0.364 + CDS 25835 - 27913 2415 ## COG0531 Amino acid transporters 30 18 Op 2 . + CDS 27910 - 29259 1065 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 31 19 Op 1 . - CDS 29256 - 31043 1779 ## COG0038 Chloride channel protein EriC 32 19 Op 2 . - CDS 31094 - 33094 2404 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 33 20 Tu 1 . + CDS 33229 - 35130 1701 ## COG1154 Deoxyxylulose-5-phosphate synthase - Term 35012 - 35058 -0.9 34 21 Op 1 . - CDS 35141 - 36385 1371 ## COG0349 Ribonuclease D 35 21 Op 2 . - CDS 36386 - 36910 426 ## Cfla_1728 hypothetical protein 36 21 Op 3 . - CDS 37029 - 39164 2357 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases - Prom 39335 - 39394 75.7 + TRNA 39318 - 39390 88.7 # Gly GCC 0 0 + TRNA 39392 - 39463 78.8 # Val GAC 0 0 + TRNA 39520 - 39592 88.7 # Gly GCC 0 0 + TRNA 39627 - 39697 63.6 # Cys GCA 0 0 + TRNA 39699 - 39773 85.0 # Val CAC 0 0 37 22 Tu 1 . - CDS 40652 - 41032 178 ## + Prom 40950 - 41009 1.8 38 23 Tu 1 . + CDS 41053 - 42681 2129 ## gi|293192615|ref|ZP_06609569.1| putative LPXTG-motif protein cell wall anchor domain protein + Term 42723 - 42767 16.2 + Prom 43137 - 43196 2.4 39 24 Op 1 . + CDS 43299 - 43964 812 ## gi|293192617|ref|ZP_06609571.1| hypothetical protein HMPREF0970_01922 40 24 Op 2 . + CDS 43968 - 44123 221 ## gi|293192618|ref|ZP_06609572.1| conserved hypothetical protein 41 24 Op 3 . + CDS 44199 - 44741 682 ## gi|293192619|ref|ZP_06609573.1| conserved hypothetical protein 42 24 Op 4 . + CDS 44745 - 44933 177 ## - Term 45035 - 45063 -0.0 43 25 Op 1 . - CDS 45145 - 46911 1323 ## COG0366 Glycosidases 44 25 Op 2 . - CDS 46933 - 47667 833 ## gi|293192622|ref|ZP_06609576.1| adventurous gliding motility protein AgmX 45 25 Op 3 . - CDS 47751 - 48488 699 ## gi|293192623|ref|ZP_06609577.1| conserved hypothetical protein 46 25 Op 4 . - CDS 48539 - 49381 989 ## gi|293192624|ref|ZP_06609578.1| conserved hypothetical protein - Prom 49420 - 49479 1.7 47 26 Op 1 . + CDS 49453 - 50730 1376 ## COG3919 Predicted ATP-grasp enzyme 48 26 Op 2 . + CDS 50830 - 51855 1426 ## Balac_1169 hypothetical protein 49 26 Op 3 4/0.000 + CDS 51928 - 53961 2929 ## COG0441 Threonyl-tRNA synthetase 50 26 Op 4 3/0.091 + CDS 53967 - 54560 638 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 51 26 Op 5 3/0.091 + CDS 54560 - 55186 810 ## COG0558 Phosphatidylglycerophosphate synthase 52 26 Op 6 4/0.000 + CDS 55183 - 56109 756 ## COG1560 Lauroyl/myristoyl acyltransferase 53 26 Op 7 . + CDS 56106 - 57287 833 ## COG0438 Glycosyltransferase 54 26 Op 8 . + CDS 57284 - 57898 472 ## Cfla_1788 hypothetical protein 55 26 Op 9 . + CDS 57867 - 59201 796 ## COG2339 Predicted membrane protein 56 27 Op 1 . + CDS 59381 - 60229 939 ## COG2339 Predicted membrane protein 57 27 Op 2 . + CDS 60226 - 60753 592 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 58 28 Op 1 . - CDS 60763 - 61446 646 ## COG0560 Phosphoserine phosphatase 59 28 Op 2 . - CDS 61449 - 62684 1626 ## COG0448 ADP-glucose pyrophosphorylase 60 29 Op 1 . + CDS 62757 - 64079 1318 ## COG0438 Glycosyltransferase 61 29 Op 2 . + CDS 64116 - 64904 197 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 62 29 Op 3 26/0.000 + CDS 64924 - 65391 582 ## COG1585 Membrane protein implicated in regulation of membrane protease activity 63 29 Op 4 . + CDS 65438 - 66397 1299 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 66411 - 66453 16.3 64 30 Op 1 4/0.000 + CDS 66467 - 67807 1330 ## COG0174 Glutamine synthetase 65 30 Op 2 . + CDS 67804 - 70740 1778 ## COG1391 Glutamine synthetase adenylyltransferase 66 30 Op 3 . + CDS 70737 - 71408 635 ## COG0406 Fructose-2,6-bisphosphatase 67 31 Tu 1 . - CDS 71396 - 71629 274 ## CMS_1968 hypothetical protein 68 32 Tu 1 . + CDS 71662 - 72144 470 ## COG2062 Phosphohistidine phosphatase SixA + Term 72154 - 72195 0.1 + Prom 72206 - 72265 2.0 69 33 Op 1 . + CDS 72293 - 73054 1179 ## COG0217 Uncharacterized conserved protein 70 33 Op 2 16/0.000 + CDS 73057 - 73959 1431 ## COG0214 Pyridoxine biosynthesis enzyme 71 33 Op 3 . + CDS 73953 - 74546 654 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis 72 33 Op 4 14/0.000 + CDS 74546 - 75175 504 ## COG0817 Holliday junction resolvasome, endonuclease subunit 73 33 Op 5 29/0.000 + CDS 75231 - 75836 609 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 74 33 Op 6 . + CDS 75841 - 76881 1083 ## COG2255 Holliday junction resolvasome, helicase subunit 75 34 Op 1 . + CDS 77061 - 77468 527 ## gi|154508892|ref|ZP_02044534.1| hypothetical protein ACTODO_01403 76 34 Op 2 31/0.000 + CDS 77495 - 79459 2547 ## COG0342 Preprotein translocase subunit SecD 77 34 Op 3 . + CDS 79461 - 80549 1495 ## COG0341 Preprotein translocase subunit SecF 78 34 Op 4 9/0.000 + CDS 80546 - 81085 639 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 81104 - 81155 23.1 79 35 Tu 1 . + CDS 81284 - 83464 1981 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases + Prom 83512 - 83571 1.9 80 36 Op 1 . + CDS 83630 - 84964 1970 ## HMPREF0573_11739 ATPase involved in DNA repair 81 36 Op 2 4/0.000 + CDS 84966 - 85685 632 ## COG0491 Zn-dependent hydrolases, including glyoxylases 82 36 Op 3 . + CDS 85713 - 87065 1821 ## COG0124 Histidyl-tRNA synthetase 83 36 Op 4 . + CDS 87066 - 88718 836 ## Arth_2523 putative ABC transporter 84 36 Op 5 . + CDS 88715 - 90304 930 ## Mmcs_1548 putative ABC transporter + Term 90396 - 90427 -0.8 + Prom 90374 - 90433 1.8 85 37 Tu 1 . + CDS 90535 - 92703 2472 ## COG0513 Superfamily II DNA and RNA helicases - Term 92586 - 92625 6.5 86 38 Tu 1 . - CDS 92691 - 94103 1410 ## COG0477 Permeases of the major facilitator superfamily 87 39 Op 1 . + CDS 94206 - 96011 2576 ## COG0173 Aspartyl-tRNA synthetase + Term 96040 - 96078 7.5 88 39 Op 2 . + CDS 96086 - 96703 720 ## COG0009 Putative translation factor (SUA5) 89 39 Op 3 . + CDS 96708 - 97889 334 ## COG2382 Enterochelin esterase and related enzymes 90 39 Op 4 33/0.000 + CDS 97980 - 99017 1373 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 91 39 Op 5 8/0.000 + CDS 99053 - 100048 725 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 92 39 Op 6 7/0.000 + CDS 100045 - 101094 605 ## COG4779 ABC-type enterobactin transport system, permease component 93 39 Op 7 . + CDS 101091 - 101885 291 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components + Term 101935 - 101998 1.3 + Prom 101894 - 101953 5.0 94 40 Op 1 . + CDS 102074 - 102205 62 ## gi|293192674|ref|ZP_06609628.1| putative iron ABC transport system, solute binding protein 95 40 Op 2 . + CDS 102177 - 103325 548 ## gi|293192675|ref|ZP_06609629.1| putative protein TPRXL + Term 103365 - 103399 0.2 + Prom 103381 - 103440 1.9 96 41 Op 1 . + CDS 103468 - 104823 1208 ## gi|293192676|ref|ZP_06609630.1| Rhs element Vgr protein 97 41 Op 2 . + CDS 104834 - 106177 882 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 98 41 Op 3 . + CDS 106297 - 106920 877 ## PROTEIN SUPPORTED gi|227496183|ref|ZP_03926489.1| ribosomal protein S4 + Term 106933 - 106976 14.5 99 42 Op 1 9/0.000 + CDS 107042 - 109750 3262 ## COG0013 Alanyl-tRNA synthetase 100 42 Op 2 4/0.000 + CDS 109747 - 110235 211 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 101 42 Op 3 4/0.000 + CDS 110232 - 111668 1408 ## COG1559 Predicted periplasmic solute-binding protein 102 42 Op 4 . + CDS 111665 - 112534 561 ## COG0169 Shikimate 5-dehydrogenase 103 42 Op 5 . + CDS 112531 - 113223 689 ## gi|293192683|ref|ZP_06609637.1| peptidase, A24 family 104 42 Op 6 2/0.364 + CDS 113291 - 114856 1354 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 105 42 Op 7 13/0.000 + CDS 114945 - 115793 791 ## COG0134 Indole-3-glycerol phosphate synthase 106 42 Op 8 37/0.000 + CDS 115793 - 117088 1470 ## COG0133 Tryptophan synthase beta chain 107 42 Op 9 3/0.091 + CDS 117090 - 117899 355 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 108 42 Op 10 . + CDS 117896 - 118849 827 ## COG0682 Prolipoprotein diacylglyceryltransferase 109 42 Op 11 . + CDS 118981 - 120426 1600 ## COG0469 Pyruvate kinase + Term 120434 - 120487 19.5 + Prom 120466 - 120525 1.7 110 43 Op 1 . + CDS 120661 - 120876 347 ## gi|154508855|ref|ZP_02044497.1| hypothetical protein ACTODO_01366 + Term 120884 - 120931 15.4 - TRNA 121010 - 121086 58.9 # Leu CAA 0 0 + Prom 120936 - 120995 2.6 111 43 Op 2 . + CDS 121150 - 121740 696 ## COG3707 Response regulator with putative antiterminator output domain + Term 121752 - 121800 16.2 - Term 121737 - 121788 17.2 112 44 Tu 1 . - CDS 121801 - 122277 375 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism + Prom 121889 - 121948 1.6 113 45 Op 1 . + CDS 122117 - 125002 2739 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Prom 125031 - 125090 5.4 114 45 Op 2 . + CDS 125174 - 126610 2182 ## PROTEIN SUPPORTED gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 + Term 126659 - 126715 19.6 Predicted protein(s) >gi|292820081|gb|ACYT02000073.1| GENE 1 4 - 996 1246 330 aa, chain + ## HITS:1 COG:ML1629 KEGG:ns NR:ns ## COG: ML1629 COG1196 # Protein_GI_number: 15827858 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Mycobacterium leprae # 8 328 862 1190 1203 276 51.0 5e-74 MALEAAERALSRAAAERDRLSERRSQVSQEVSDARRALDRLSAELSEATASAHQGQIAAE QTRLRVEDLQRRALEELSLEPEQLLAEFGPDTLVPMLPLDPDQVEKAAAAEPSAYVRAEQ ERALAKAQKDLEKLGRVNPLALEEHEALASRHKFLVDQVQDLKASKADLLRIVQDVDRLV EEAFASAFTETREQFEHVFGVLFPGGQGELVLTDPDDMLTTGIEIEARPAGKKVKRLSLL SGGERSLAAIAFLVAIFKARPSPFYVMDEVEAALDDMNLTRLLAIFKELQETSQLIVITH QKRTMEIADALYGVTMRDGVTTVVSQRLAD >gi|292820081|gb|ACYT02000073.1| GENE 2 1098 - 1385 310 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192576|ref|ZP_06609530.1| ## NR: gi|293192576|ref|ZP_06609530.1| ribbon-helix-helix protein, CopG family [Actinomyces odontolyticus F0309] # 1 95 1 95 95 177 100.0 2e-43 MSKKQEGTYHLAGGMTVTDADLEADAQRFEAGECDGAWKVLPGRPQLFGEDTMPVGTRLP ESLVRELDKVAGELGQTRSELVRRFISDGLLALKT >gi|292820081|gb|ACYT02000073.1| GENE 3 2124 - 2309 87 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPNRALHNWTQLGFESADFDERSDDVGAKISVSESGAAQVFEATVDRFGGALRSVRVLS K >gi|292820081|gb|ACYT02000073.1| GENE 4 2428 - 2937 294 169 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAATILQRIADRKRTLRGLLSYANTSSLKPEETEALSALIVIRSCGYIEYAFESLLEHYA KIQSSPNIQSFIASTHGQGRNPWPRTLESRLEAYSGKWREDLSTHLSNVSMNGINTNREV LSNLVTLRNKIAHGDSQQASLRTVLNYPEFAIAFVEELDNIILEGIQRS >gi|292820081|gb|ACYT02000073.1| GENE 5 2942 - 4102 354 386 aa, chain - ## HITS:1 COG:alr4229 KEGG:ns NR:ns ## COG: alr4229 COG1479 # Protein_GI_number: 17231721 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 5 370 7 383 393 126 27.0 8e-29 MVSELNENEKNYSPLLTEDEEAQINENIAPGDVELSYRTQDFTVDSLISRLDSGHIIIPS SDYDADDLTTERFQRDYVWKKSQMDRFIESILLGYPLPGIFLVRQSRDNKLLVLDGQQRL RTLQAFYSGKYMRGKRPAAFKLDNVTENFRGLTIETLPAYLRRALDDTYMQGTIIEANND PHTLSAVYSLFERLNTGGTFLTPHEIRIALFSGQLFRELDSICNDHSWRTLYGNTPTRKR DHELLLRIFAFSMEGEKYAPPLKGFLNQAAENYSDLSTEASKAAISALKIAINTLASSMG SDGFRRSSTLVNAADAEAVLSTLTRHFIAMPDSNVSAEVINNWVNLLRQDQAFQNATSVA TANLQAATTRRTIADNTFQQTLETTL >gi|292820081|gb|ACYT02000073.1| GENE 6 4252 - 4695 192 147 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTQQQTPIYDPIHASKFISPSIAGRLVGLLGPVLPVRARMAGDLTAHDRGATPNQVSDAR FGQAHIHPRHDRRTILDSKHPTTPHDQPPNSITTTRKLLTPYDTALCHYVQTNDTRTSPL FAPQSWARCCMDSNSQQDRTHKFSALT >gi|292820081|gb|ACYT02000073.1| GENE 7 4765 - 5076 208 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192582|ref|ZP_06609536.1| ## NR: gi|293192582|ref|ZP_06609536.1| putative 2-hydroxy-3-oxopropionate reductase [Actinomyces odontolyticus F0309] # 1 103 1 103 103 175 100.0 7e-43 MVERCDAHEWDQGDSFDNGVDWAAFGELRTRCDDVRESWCTDADIYDEKGAPAAFDEQSM TAHEACETGVYHLAGGCVVTDADLEADAARFQDGECTGEWRIV >gi|292820081|gb|ACYT02000073.1| GENE 8 5111 - 5491 367 126 aa, chain - ## HITS:1 COG:no KEGG:HMPREF0675_3721 NR:ns ## KEGG: HMPREF0675_3721 # Name: not_defined # Def: hypothetical protein # Organism: P.acnes_SK137 # Pathway: not_defined # 1 123 1 120 123 89 55.0 5e-17 MTSIIVTAQRWESKLGGGWELLNDDHAMTQVRRLSDARQQVIDYLDTIDPDVNHRDWDIT IIPAIPQAQSVKEAKAATQDAIDAQAAAAAQSREVARSLRASGLSIDDTAWIMGVSRSRI SQLARA >gi|292820081|gb|ACYT02000073.1| GENE 9 5488 - 5682 235 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192584|ref|ZP_06609538.1| ## NR: gi|293192584|ref|ZP_06609538.1| conserved domain protein [Actinomyces odontolyticus F0309] # 5 64 1 60 60 100 100.0 3e-20 MTRPMPYRKLKRELLKAGFVARQGKGDHEVWSKDGITVVITQTREVSPALTRQALEAIER SKQK >gi|292820081|gb|ACYT02000073.1| GENE 10 5839 - 6072 214 77 aa, chain - ## HITS:1 COG:no KEGG:Sros_7085 NR:ns ## KEGG: Sros_7085 # Name: not_defined # Def: hypothetical protein # Organism: S.roseum # Pathway: not_defined # 21 77 10 66 76 65 50.0 8e-10 MVCDGSMNAQTLERPVLDEPQLSAANRCDACGARAWVRATMPSGGQLYFCGHHANEHLPS LVGGGAQILDERHFMND >gi|292820081|gb|ACYT02000073.1| GENE 11 6293 - 8410 3175 705 aa, chain + ## HITS:1 COG:MA1584 KEGG:ns NR:ns ## COG: MA1584 COG0187 # Protein_GI_number: 20090442 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Methanosarcina acetivorans str.C2A # 7 691 2 622 634 521 44.0 1e-147 MHIVTPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEG HCDTIDVRLHPDHSASVADNGRGIPVDIVPGQGLTGVEVVYTKLHAGGKFGGGSYAASGG LHGVGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTL KTVGKVKKSLTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEE ELHESFRFDGGVVDFANWLASDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVERTC EVDIALRWGIGYDTTVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGAKD GRPEKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSKRD DKQQTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELFIV EGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRTFD LSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGR KKREYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRR ITLADEEALRQAEDVFELLMGSTVGPRKEFIVEESAGLDRTRIDA >gi|292820081|gb|ACYT02000073.1| GENE 12 8515 - 9534 966 339 aa, chain + ## HITS:1 COG:no KEGG:Cfla_2054 NR:ns ## KEGG: Cfla_2054 # Name: not_defined # Def: GCN5-related N-acetyltransferase # Organism: C.flavigena # Pathway: not_defined # 4 326 8 327 340 172 39.0 2e-41 MTGLAQRLTPPGSVPYPGNHLGLRWRPMIGRDAPAVYALISLIEDDDNAIRRTSVDDIAD MMEGENGRDWVDTIVGLDAKRNICAVASVRVLRGIHEAATAVVRAFIHPHWRGRGVGRAL LYWQDGRARQMLVEAFGAESEVPASISNLVDAHMTDRRRLYIAAGFFAKRTYQVMYRDLA GGEVPVPARHGYRVLPWNKVPQDQIRAIHMEAFQQSFRSPLRALWWDDAMNHFDTRWSFV AVDAQGEVVGYAITGRPAQRWVATGRPEAYIYLLGVAEAHRGRSIASALVGHAVAAASAS GASRIGLDVDMSSPDGAHKIYEHLGFVDEAAEVYYTIDQ >gi|292820081|gb|ACYT02000073.1| GENE 13 9553 - 10575 1175 340 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1925 NR:ns ## KEGG: Bcav_1925 # Name: not_defined # Def: GCN5-related protein N-acetyltransferase # Organism: B.cavernae # Pathway: not_defined # 4 340 15 352 352 217 39.0 6e-55 MSIPLAQRANAPEFVPFPGEHHGIEWESLTDAHHDGLSALFARMEARDNPPYRTSPDEVE EMLSGASQWRGLVGIARRGIAAGRIVAFAQVVLRFPGRVECVCVGGVDPDFRRVGLGNAI VDWQEGTARQMLAEVEGDAPAQITCHVETGQDDLEAQLKVHGFRWTRTYYELRASLDSLP PVPDLGSYMSVEAWGPQWEEPALRAANRLNESEWGRPPLTQEQWMQGRTAFAPEWSFVAV DRTGDRPRVAGFLLASRYEQDWAALGWREGYIDQLGVLSQWRESRVADALILASMWAQKR DGMDRAGTGVGSANHTGALAIYNYLGFRTVGQTRLYAIEI >gi|292820081|gb|ACYT02000073.1| GENE 14 10794 - 12260 2006 488 aa, chain + ## HITS:1 COG:STM4418 KEGG:ns NR:ns ## COG: STM4418 COG0477 # Protein_GI_number: 16767664 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 480 13 456 477 254 32.0 2e-67 MASQSSAPSRSIPPLVIRSAIVASLGGLLFGFDTAVISGAEEKLTELYALSSTGEGMIVA IATIGTIVGAIIAGNLADRFGRKPVLFWIGILFGVGALATALAPLPTLVSAADGTVSASS AFPITFFMIFRFLGGVGVGLSSVVAPIYTAEIAPARVRGRLVGLVQFNIVFGILLAYASN AVIREIAHEDTAWRWMLGVMAVPAIFFLIFLATVPETPRWLLAHGREELAVKISEHLTAS QAECDEQIGEMKAQIAEDAAGGKVPFFTRRYRKVILMAFCIAMFNQLSGINAILYYAPKV MKLAGGAEVLGDAFPYIGSVIVGLMNLVATMAALTVIDRIGRRQLMIVGSIGYLISLGFL AGMMFAYEGGYFEEGSAAPVWLILLGLLGFIASHAFGQGSVIWVFISEIFPNRVRARGQS LGSLTHWVFAFITTYAFPVLTDKLGGGYAFGIFFLAMVGQLFWVLKVMPETKGIPLEEME EKLGLTND >gi|292820081|gb|ACYT02000073.1| GENE 15 12253 - 13203 1240 316 aa, chain + ## HITS:1 COG:mll7580 KEGG:ns NR:ns ## COG: mll7580 COG0524 # Protein_GI_number: 13476296 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Mesorhizobium loti # 4 305 2 307 307 117 32.0 3e-26 MTRIVNIGEALIDEITRPNSEPVEVVGGSMLNVAAGLTRLGHESELATWFARDARGDKVR AHAEAAGVTLTPGSDGAEFTTVAHAAVDERGHATYEFDLSWDVPAVEDPDTVGHVHTGSY VVVVEPGADKVLAAVKRQAIRGTVSYDPNIRPALLGTPDEARPHIEAIVALADVVKASDE DLEWLYPGRPVEDVIREWSQSGPSLILCTRGPWGVYIKAAAERDMLVVDPLDVELVDTVG AGDSLMAGLISGLVDAGLLGSGEAKQRLREASWDQILPAIHRGIITSGITILYQGAYSPT REEVADVLAADPTLRG >gi|292820081|gb|ACYT02000073.1| GENE 16 13400 - 13894 370 164 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192592|ref|ZP_06609546.1| ## NR: gi|293192592|ref|ZP_06609546.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 18 164 1 147 147 184 100.0 1e-45 MADVGFDSDKHAQTSGDMEKGGQSLTDSSQAISRLIDAQKAEYWSEEAGFQAMRRSLIAY LRTEKDAVSNQKVRFQKFDGDVDTAASAFEAAEQGNTDELARILASMDPQPAGTPSSPAT QAPSQIAGGGPASSGNANGATTSGSGGSGSGAGTSPTQNAPSEV >gi|292820081|gb|ACYT02000073.1| GENE 17 13912 - 15456 1138 514 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192593|ref|ZP_06609547.1| ## NR: gi|293192593|ref|ZP_06609547.1| PE_PGRS family protein [Actinomyces odontolyticus F0309] # 1 514 1 514 514 818 100.0 0 MVDSPMYDRLMRLVAAIESASALDASDDEHNTIVCGLNEANNVTHHMRSYQGFTGETGDQ IDAWTDATMKQVQGIKENHNTAMEYYVEARRAMTHIREEAQQLSPTLIDSNLQKLADATH VAVPVVKYLGPFGEPINTLAVSADAYFQALIAQANAQREVAATNILERANNTMQGLADGI GGQRDVLANGLENEEGKKTEGPSSPHIRRDIENGYLNVSPHAPGVYPGDRDSDYGRSDLR GTGSGLYSDGYDEGGPVNGRVMSSPRIPNEYITEGEIGSRLNPVTDPQELMGMDLLHTRV NGDRHANGTVGGYTPAPPVDRYHPLWNVNGGPGSESALAARMGGAGIPGAGALGMVAASR LGAGGMRALGRTGASGASGGGLSATSALRAGSYSGPGYGTYKAPAAGGAGIGAGGTTAAP GGSAGSGKVSASGGAGQGSSRGAGGFMGGAGAGGAGGKDDKKKSARRKYTPFRFDDDGDE LPEGYVNPMSQTYGSDKDLSPAPRKDDGWDPRQW >gi|292820081|gb|ACYT02000073.1| GENE 18 15468 - 16649 652 393 aa, chain + ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 27 295 83 340 361 85 28.0 2e-16 MPRKSRRVWGASTAALVIAAGVTTLPAAPAQADNTITAADQPYFAYYHLDQARAKGYTGK GITIAMIDGEIAQNAAELVGADVVIKTPCTISSPATGRTHGTGVASMLVSSNYGIAPDAS LLAYRAAFGADGDTTGSDCRDNNGIAKSEYPWLLNWAMNDGAQVINVSASSSLQSDELKW AIARSLSQGVIITAAAGNEATDGDTTALSQWSGVVGVSAIGIDGNRQDYSSWGQGVSTTA VGGPVKFRDPSTDQLTEVSGTSVSAPIVAGVLALARQKWPNATSNQLLQLLVKTGLNPDH TWNQYTGYGGIDPGAILNTDPTTLPDVNPLADKGNGSSPTVDEVQQYADGVVSPLQIVND NSYSYRGFDESLITDPLVTVPMHLGTSPRYHAK >gi|292820081|gb|ACYT02000073.1| GENE 19 16730 - 19201 2916 823 aa, chain - ## HITS:1 COG:SA0006 KEGG:ns NR:ns ## COG: SA0006 COG0188 # Protein_GI_number: 15925711 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 17 768 9 743 889 527 41.0 1e-149 MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS LDDGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGAS GIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKEA YETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQ NLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQ VFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMT AFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVKKEL REVSDRLGTPRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLELQIPDDPCVVVLS SSGALARVEGGDPLEPGPRAASDGWRVQLPSTARSQVAVVTEDGIAHRIDVVDLPALPRF ETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMGTARGTVKRLRPDVLQRDEWEVIT LEDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNPGVEALGF WVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPFECYPTKGRGGQGVRCQRFLRGEDRLD IAWVGTKPARAASADGSPVELPAEDERRDGSGVPITFAIASIG >gi|292820081|gb|ACYT02000073.1| GENE 20 19269 - 19805 581 178 aa, chain + ## HITS:1 COG:no KEGG:Arth_1629 NR:ns ## KEGG: Arth_1629 # Name: not_defined # Def: hypothetical protein # Organism: Arthrobacter_FB24 # Pathway: not_defined # 7 169 39 210 246 102 36.0 7e-21 MDTWTRIERGGFYPKAVQRALRRALGAAEPLATLCQVDTGFDRGSVFRHLTIASLTDRAI VQLHVDEMDGGSATIATAVHRVGDIAGYSTMEVYTDPENASGLSEMTIALDLKGARRLEL EPARCDDPNCMADHGLTGTSFPDDMTFRISAAADGQDALDEAMVFVDHLARLMGTRSE >gi|292820081|gb|ACYT02000073.1| GENE 21 19798 - 20946 1024 382 aa, chain + ## HITS:1 COG:TM1581 KEGG:ns NR:ns ## COG: TM1581 COG1524 # Protein_GI_number: 15644329 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Thermotoga maritima # 57 380 51 377 381 77 24.0 6e-14 MSERALALDLPGADLPAAGDPVITDVIAGALSSIDSALPGASAQAGGALGIEAGADQVIL ILVDGLGYELIQDHLGHTPTLRRMRDDIRSIHTVVPSTTAAAITAFGTGARPGTTNMVGF SVAYGGGIMNLLAMEGGPAPTKWQPTPTYFERLAAAGVSSAVISPARFAGSGLTGAALRG ARHVPAESLSDRVSAALRELRAGTPVVYLYWSEIDHAGHSSGVGSDAWIGCLEEFDAGLS ALLRGLPTGVRTVMTADHGMINVEHSALVDVAATPALREGVRIVAGETRAVHVHAQEGHA ANVEARWRDVLGESAWILSRDQMGALIGPGDGASIIGDLLVLTRGNGGIVDSRTQSASAI AMPGVHGSLTSTEMRIPVIVLS >gi|292820081|gb|ACYT02000073.1| GENE 22 21012 - 22262 1322 416 aa, chain - ## HITS:1 COG:no KEGG:Cfla_1698 NR:ns ## KEGG: Cfla_1698 # Name: not_defined # Def: DNA-binding protein # Organism: C.flavigena # Pathway: not_defined # 1 415 1 377 379 145 33.0 3e-33 MIELELLGISADGESLVLTDAQGERYSVLISDELRGATRRDRPRVELAPARPTLAPRDIQ ALLRAGATPAEIAEQHGMEVSAVERFEAPVQAEKDYALTRARAVRIGDGGPTMGDLVLDR LAARGVDPSSLEWTATREAGEPWQIIVNFVQGAAEHAAHWHLSNSGSLEAIDQEAQWLTE QVSTSPTASIFTPLPRNAPAPVVDPGAEDLRNREAIIDQLNAMRGKRQQIDLDLDDEVDE EAEYLAAIAGEEEAPTAETDTSTGPISARIYSLASARTKAEAPSDPAEDTLFPATGQIPS ARPTLTGAIPVASRSPKTEAPASSGVLPWLSDAPASSGEDKGGEEVKAEEQATPAIPMKA VQASDSTDPTPAEAEESATGSVSSQGVTGSRMARASSKKTRRSVPSWDEILFGSKS >gi|292820081|gb|ACYT02000073.1| GENE 23 22429 - 22731 424 100 aa, chain + ## HITS:1 COG:no KEGG:Jden_1411 NR:ns ## KEGG: Jden_1411 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 1 99 1 98 98 114 68.0 9e-25 MATDYDAPRKNEDEVAEDSIEELKSRRNDAGSAEIEEDENEAAENFELPGADLSKEELTV HVIPRQEDEFTCSQCFLVHHASQLDHVDANGAPVCTECAM >gi|292820081|gb|ACYT02000073.1| GENE 24 22741 - 23373 953 210 aa, chain + ## HITS:1 COG:no KEGG:Achl_1630 NR:ns ## KEGG: Achl_1630 # Name: not_defined # Def: hypothetical protein # Organism: A.chlorophenolicus # Pathway: not_defined # 2 204 5 210 240 115 34.0 1e-24 MFGRKKKTVEEEIEEVEALPRLSDEDAAIWSEPGPRNYGEVDTSDGYVDMGSILFPAVQG MQLRTQVADDGTTVLQILVVLGNSGIQMSVAAAPRSGGVWEELREEIRRGFEDQGAKVAD YPTRYGNELLVDMPMQMPDGRSATSRMRIIGREGDRWFARIDILGPAAATAEAGADIEKV IDRIVVRRDDYPRTRLELLPVHLPAGAQEA >gi|292820081|gb|ACYT02000073.1| GENE 25 23375 - 23755 426 126 aa, chain + ## HITS:1 COG:no KEGG:Caci_2022 NR:ns ## KEGG: Caci_2022 # Name: not_defined # Def: nucleic acid binding OB-fold tRNA/helicase-type # Organism: C.acidiphila # Pathway: not_defined # 14 124 670 778 781 63 35.0 2e-09 MASWFAKVGAALGLDKDTRSLDAALDEDSARAARGVTPIRDVTDRSHALVFGTLLGMTYP PEEGAQRVLVATLYDGTDTLELRWPGRSSIPGLSVGQRLEVEGTVGRVGERLVIINPLYR VIAGEG >gi|292820081|gb|ACYT02000073.1| GENE 26 23755 - 24429 638 224 aa, chain + ## HITS:1 COG:no KEGG:Bfae_14520 NR:ns ## KEGG: Bfae_14520 # Name: not_defined # Def: hypothetical protein # Organism: B.faecium # Pathway: not_defined # 13 201 68 253 266 122 41.0 1e-26 MPTPRWMDQATSEEFSWSRALGGTRGVIEATAPGLLFVIVFVATRDLLPTLIAASAVALI ACVIRFVQHQGIGQALSGLFGVAIGVIFAAATGRGENYFAWGIATNVAMALAFALSVLCG RSLVAQFYGPLTGLAKGWQSDPAYASLRRSCAAITWMWAGIFALRVAVQAPLWLAGQVAG LGVSKLALGLPLFAVGAWATWWKLKVYSSVSSSSDSSETGDATS >gi|292820081|gb|ACYT02000073.1| GENE 27 24372 - 25076 881 234 aa, chain - ## HITS:1 COG:MT2766 KEGG:ns NR:ns ## COG: MT2766 COG0569 # Protein_GI_number: 15842230 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Mycobacterium tuberculosis CDC1551 # 13 215 13 215 220 188 51.0 7e-48 MKIVIAGAGSVGRSVALELLAHGHDITLIDNMPEKLRISSVADADWVLADACSPDALRDA GVAEADVMVAATGDDKANLVISLLAKTEFAVPRVVARLNNPKNEWLFDQAWGVDVSVSTP RIMTSLVEEAVSVGVPVRLFSFNTAAVSMHALILPEDSPVVGKRVHSLQLPARSVLAALL RDGRPITPSTDDVFEASDELLLLVPDADTAELEDLRQLVASPVSEESEDEDTEE >gi|292820081|gb|ACYT02000073.1| GENE 28 25079 - 25744 630 221 aa, chain - ## HITS:1 COG:MT2765 KEGG:ns NR:ns ## COG: MT2765 COG0569 # Protein_GI_number: 15842229 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Mycobacterium tuberculosis CDC1551 # 1 200 1 200 227 186 50.0 3e-47 MHFVIMGCGRVGARLASTLDAAGHSVAVIDQDSKAFSRLSPDFSGRRVTGVGMDRDCLRQ ANIKDAYAFAAVSSGDNSNIIAARVAREVFHVEHVVARIYDPTRAYLYERLGIPTVASVQ RTAESVMRRLLPPDASLIWSHPTGAVGLVNATPSPAWYGLSFQAVEELTGCRVVFTSRLG SIRTASPDLVVQEHDQLYFAINGTETAQLRDQLANPPKTEV >gi|292820081|gb|ACYT02000073.1| GENE 29 25835 - 27913 2415 692 aa, chain + ## HITS:1 COG:MT2764 KEGG:ns NR:ns ## COG: MT2764 COG0531 # Protein_GI_number: 15842228 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Mycobacterium tuberculosis CDC1551 # 1 655 1 649 657 583 52.0 1e-166 MTNLLAYAKRVLIGRPMRSDAMGHQLLPKRIALPIFASDALSSVAYAPDEVLLTLALAGS MAALQSVWVGVVVAIVLAVVVASYRQTVHAYPSGGGDYEVVTTNLGRSWGLLVASALLVD YILTVAVSISSGASYITTAVPALLGYEVPIAVALVVILATLNLRGTREAGGAFAVPTYLY MGAIGLMVVVGFAKMATGYLGESPTAAYDLVTAPGNADGLAGLAGAFLLMRAFSSGCAAL TGVEAISNGVPMFRRPKSRNAATTLAMLGLIAASMMISILVLARATGVKIVDDAATQLTY QGAPVPENTPIDPAISQIASAVFGQGSILFILITVVTGFILVLAGNTAFNGFPTLASVLS RDSFLPHQMVRRGDRLSYSNGIVVLTVAAIALIVGFEAQTTRLIQLYVVGVFISFTLSQL GMIKHWNRQLRSRQSGQERMAVLRSRAVNIVGFMMTGLVLIIVLATKFTHGAWITLLMIA IVFGIQISIHHHYETVRSQLRVDDWNARRALPTRVRALVLVSSLSRPAMRAIAAARASSP TSIELVSVVEDDEEENKILRQWKASGVPVPLTLLSAPYRDIASVILQYVRGRRRAMPTEM LVVYMPQFLVTHWWENIVHNQSALRLRAALLGVPGVVITVVPWQLGEDDVVEGRQRVNDP FSRVVAPASGDSKSRTEQPGTTRSESPTEENA >gi|292820081|gb|ACYT02000073.1| GENE 30 27910 - 29259 1065 449 aa, chain + ## HITS:1 COG:Rv2689c KEGG:ns NR:ns ## COG: Rv2689c COG2265 # Protein_GI_number: 15609826 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Mycobacterium tuberculosis H37Rv # 29 449 11 403 405 173 34.0 5e-43 MSPRPSRRRPSPRRRTAAVQPREGIGEILQLTVGEPAHGGACVARDESGRVVFVRHAAPG EIVRARVTAVQKKLAWADAIEVVEASADRVESVWPQAGPGGVGGGELAHLTPAAQRDWKS RVIAGQLRRVGGEALSDAVEALGGVHVAPAPGDEDANDPLTGRRSRIDVVIDADGRAGMH EFRGRRVIALEDMPLAVPAIRELGLFDEDTPWRRLWKPGDRVRAVAPSGGDPVVLIGEDT YATDGLRIDADVLRWNVPVGSGVESYYVRPSGFWQTHVRGAEVLANAVLAAAFGAGEAGA GRAVMELYSGAGLFSVPLARAVGESGRVVTLEGDEGAVRDAGENLAAFDWVDAFAGNVDR EGVVDLSGQLSAVPDVVVADPPRAGAGAEVCEAIAATGAPRVVLVSCDPAAGARDLRTLT EDGYQLESLQAWDLFPHTHHVEMVSVLSR >gi|292820081|gb|ACYT02000073.1| GENE 31 29256 - 31043 1779 595 aa, chain - ## HITS:1 COG:VNG1544G_1 KEGG:ns NR:ns ## COG: VNG1544G_1 COG0038 # Protein_GI_number: 15790525 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Halobacterium sp. NRC-1 # 14 445 180 634 654 202 36.0 2e-51 MRVGHAVAAHRSLLGVAAALVGAVVGAAAVVFNLAIRAWTWVSTGFDEYTTHVGQPHGVW GWPPWLFLLLSPAIAGLLYGPLIQRFAPSAKGHGIPEVMLAVRRKGGRIPGRVAIVKILA SALTIGSGGSAGREGPIVQVGASLGSTIASWLRMPVSRVVLLASCGSAAGIAATFHAPLA GAVFALEVILVEFTAETFGFVVLSAVTSSVVARILQGDEMVIRVADNLIFASMSDIWWVA LLGLVAGLCGLGFSKLLYASEDAIDWLWARTHLPEWARPGVLGLALGAALVAFPYMFGSG YPLEEEAIAGSYSIAFLLALMLGRAVFTSFTIGMGGSGGVFAPTLFIGAMAGAAFGDVIS PLSDSPVGVFAVVGMGAAFAGAARAPMTAVLIIVEMTGQFSLILPMMLAVVIATGASRFL TRATIYTEKLRRRGDVLDDPVEGTLLGTRAASEWMTEAPETLPCEASAASAIAALRRTKE TVLPVVNDDRRFIGLVSSLRLAELTQEDGSLDAPLSDLPLIDEAVAASAPPSEVLGALRR TGLQSLPVVDADRRVVGWVSERDLVDRMYRDQRRAIEARTQTSWGSRMQERRRIR >gi|292820081|gb|ACYT02000073.1| GENE 32 31094 - 33094 2404 666 aa, chain - ## HITS:1 COG:slr0825 KEGG:ns NR:ns ## COG: slr0825 COG1506 # Protein_GI_number: 16331709 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Synechocystis # 5 652 9 631 637 430 37.0 1e-120 MSVTVAPHGLWKSPISGDSFTARSVTLSQVRVDGPDTYWVEGHPLQGGRGTLLRHRGTGE TGEVLPLIDGSRLPDVGTRVHEYGGKAYAVHHGVIVFSDQTDGRVYAFDTADPRRVVRPL TTLSKVRYGDFWIADVRDLVYAVAEDHSAPGEPVNKIVAIPLDGSAARDDSAIITVFEGT DFAQAPTVSPDGTKIAWITWNHPNMPWTYSQLRVASLTFEGTIDQEVVLVDRPGVCVYEP RWTLDGDLIHVDDSSGWANLYRTQGFVWKEGEDPNAWTSRLRTRALHPGPHAFSHPHWKL GLHSYDNYDNDYLVCSWAEDQVWHVGTVRIDNGMAEEWATGWWPIGNVAAADGRVVFLAD SATHTPAIIEVSRGKTKVLRPSSEAEVPTALVSTAEMLTWKTSDGEEAHGFYYAPVNPEF AAPEGELPPLIVNVHGGPTEAARPGLQVPFQYWTSRGFAVLDVNFRGSTSFGRPYRERIN GNWGVMDVQDCVDGAQYLIDLGRVDPKRIAIRGRSSGGFTVLNALASSDVFTAGASFSGI ADLVKLKETSHKFESHYDAILLGTDDTSDPVWAQRSPINRVGDIKAPLMLLQGTDDPVVP ASQAQEMYEALRANGNAVALKLYQGEGHRFRSAINIKDAWQSELAFYRTVWGIATDAPVH VEIANL >gi|292820081|gb|ACYT02000073.1| GENE 33 33229 - 35130 1701 633 aa, chain + ## HITS:1 COG:Cgl1856 KEGG:ns NR:ns ## COG: Cgl1856 COG1154 # Protein_GI_number: 19553106 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Corynebacterium glutamicum # 10 620 3 623 636 649 53.0 0 MSGTRESRDLLSRCSAPRELRRLEREQLDELAAEIREFLIDNVSRTGGHLGPNLGVVELT IGLHRVFRSPQDTIIFDTGHQAYVHKLLTGRQDFSSLRCPGGLSGYPSRGESEHDVVESS HASASLAWVDGISREKHRQGDRTWTVGVIGDGALTGGLAWEALNNIATAKNRRIMIIVND NGRSYAPTIGGLAAHLDALRTSARYEKALAWGKQHLLSHGTPGRAAYDALHGLKSGIKDA LMPQVMFEDLGLKYIGPVNGHDIAAVETALRRGRSLDEPVLVHMITEKGRGYTPAEEHIA DRFHAVGPIHPETGLPVAPERFGWTGVFADEICAQAATRDDIVGITAAMMRPVGLGPMHE AYPGRVIDVGIAEAEAVASAAGMAYQGAHPVVALYATFLNRGFDQLLMDVALHRAGVTVV LDRAGVTGADGASHNGVWDIAMCSMVPGLRLAAPRDEQTLRARLREALDVDDAPTVIRYR KGSLPEPMPALRSVGGVDILFDEAVADSPARVLIVGTGACAPDAIEAARRLAAAGVSVTV ADPQWMIPICPELATLVRDYDCVVSVEDGIVQGGFGWSLRDAVAETGVPVRCLGVPQEFP EHGERAAMIAQFGFDADGIERAARELVERIGER >gi|292820081|gb|ACYT02000073.1| GENE 34 35141 - 36385 1371 414 aa, chain - ## HITS:1 COG:ML1040 KEGG:ns NR:ns ## COG: ML1040 COG0349 # Protein_GI_number: 15827504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease D # Organism: Mycobacterium leprae # 10 412 9 424 429 242 39.0 1e-63 MLVNNGGGLPQGDTDNPELIAQPRGGTPAVIDTQKDLEAAAHALSAGSAPIALDVERAQG FRYGSDPYLVQIRREDVGTFLIDTHALPDLSVLQPGVEDVWLLHDCLQDLPNLRQVGLRP SALFDTEIAARLIGLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVEL LTELYYRLSKRLDEMGRWEWAQQEFAYALSVTPPGPKPDRWRSIPGAGKIRSRRGLAVLK ALWETRESIAQRIDLSPGRLVRNAALVRAASNPPRNKRALMSISEFRSPVARQYEDEWMR ALSSVAAMTEDELPPKRKPVQPGSIPEPHHWNRIDEASAARLGTVRNAVASVASSLGLAP EVVLAPQVQRYLAWAPLDPSRPSGDEVEERMVNRGARDWQIDLTLDPICDALGV >gi|292820081|gb|ACYT02000073.1| GENE 35 36386 - 36910 426 174 aa, chain - ## HITS:1 COG:no KEGG:Cfla_1728 NR:ns ## KEGG: Cfla_1728 # Name: not_defined # Def: hypothetical protein # Organism: C.flavigena # Pathway: not_defined # 1 167 29 197 208 134 43.0 1e-30 MRALLSLRQADHLAHILLEEVPPPRRLAPFTAALAMRTTDEDEAGQPLSTGRMVILHDPV EQIGWNGTFRVVCQLRAQVDAEMIGDPMLSEGVWGWMLDCLETAGAGFHDITGTVTREMS EAFGGLELRGSSLFVDVRASWTPNSEYLGEHLSGWADVMRRTAGIVPARHLEGV >gi|292820081|gb|ACYT02000073.1| GENE 36 37029 - 39164 2357 711 aa, chain - ## HITS:1 COG:Cgl2054 KEGG:ns NR:ns ## COG: Cgl2054 COG1523 # Protein_GI_number: 19553304 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Corynebacterium glutamicum # 5 710 13 721 836 912 61.0 0 METRPGKAYPLGATFDGTGTNFAIYSSVATSVTLCLLDDNLNEMRIPMTEVDAYVWHVYV PQVSAGQRYGYRIDGPWDPQNGLRCDPSKLLLDPYAKAIEGQLKDSLDLLSYQADDPLTI KGGDSADATMHSVVVNPFFDWEGDRSPGHDYSESIIYEAHIKGMTMRHPDIPEELRGTYA GMAHPAIIEHLTKLGITTVELMPIQQFTNDTTLQAKGLSNYWGYNTIGYFAPHNSYAATK DPGAQVSEFKAMVKALHAANIEVILDVVYNHTAEGNHMGPTLSFRGIDNPSYYRLVDGDR QHYFDTTGTGNSLLMSSPQVLQLIMDSLRYWVTDMHVDGFRFDLASTLARQFAEVDRLSA FFDLIHQDPVVSQVKLIAEPWDVGADGYQVGGFPPLWSEWNGRYRDTVRDFWRGEFSSLP DFASRLAGSSDLYGTTGRKPMASVNFITAHDGFTLRDLVSYNEKHNEANLEGGADGANDN RSWNCGVEGDTDDEEIIELRYRQQRNFLTTLMFSQGVPMIAHGDELGRTQRGNNNVYCQD NELSWINWDLNEHDYKLLRFTRHLIHLRRDHPVMRRRRFLEGPAQRGGESELGEIEWFTP AGTHMTEEEWNQPWARSTMVFYNGDAIREPDANGRRILDDDFLLLLNAAPEPVEFTLPDA KYGHIWHTVVDTAGDDDRDEYHSGDIVHVGPRTSFILRNPRRLESPEQQRP >gi|292820081|gb|ACYT02000073.1| GENE 37 40652 - 41032 178 126 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCDGVASYCTILCQPPAIWSRIRAISSTGTTTNTSDKSKHHHCGGLIYRLTTSVTRECRP MSEQPTHTADKLTSHSANTKTAEVTHKTHQPEARTQRPPPHNTRGIGHNALVVVQPLTTS RTVSLG >gi|292820081|gb|ACYT02000073.1| GENE 38 41053 - 42681 2129 542 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192615|ref|ZP_06609569.1| ## NR: gi|293192615|ref|ZP_06609569.1| putative LPXTG-motif protein cell wall anchor domain protein [Actinomyces odontolyticus F0309] # 1 542 1 542 542 985 100.0 0 MVALKRRHFGVLVAIFALVVSFFGLAQFIGAQAPASAAPLSCPEPTTNVSNKVTLDWDNA QLVDHAGRETKAVGDWWDLGIKLPWKTDGRVKAGDYFTYDASIVNTATGESVLRPNVARK FEVISNNGVVVGCGTWGADGMVTVVFNEKVESAAQWYGHVSTNGLTHYTGPGGEKYTVKL GKKVEREIDMLRRTPGVPRYQKDGWLTLGENEDGDENKAIMWRVVFPAGDKAVTGASIVD EVPAGSNWSFNCDVVNEYTKNHTYLVTDPTTSEGLRQDNDTSKGAFGAAAQVECSSSKVT VTLAEIPANQAAIILLPAHIEGAKRAGDVVGVFSNTVNFNVLGGKVVEPITKTLHYGAVA DAYAHQTFSVTKKVEGDLPESAQDLEYPLTITLKNDADPSVNKTYEASVKAGETYTYPTS LPLGTVVTVSEGDLPAGVGITWNDGESRVFEAADGVTLSADNREATFTLSDDQVYSLTLT NVLAPTPTPSATPSTPSPTPSATPSPTPQLAKTGTDAAGLGVLAGIVAIAGLSLVAAKRR SH >gi|292820081|gb|ACYT02000073.1| GENE 39 43299 - 43964 812 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192617|ref|ZP_06609571.1| ## NR: gi|293192617|ref|ZP_06609571.1| hypothetical protein HMPREF0970_01922 [Actinomyces odontolyticus F0309] # 1 221 1 221 221 404 100.0 1e-111 MVALKNTRLSALLIAFALVLSFVDALQLLTTRTALATALACPAPTTNVNDKVDLDWDNLQ LVNPQGAEAKTIANMWDTGVKLPWKIDGAVKAGDFFTYDATVAEADTGQSILRPTAERSF DVRSATGVVVGCGTWGTDGNVTVVFNENVNSAAEWAGSVTTSAMIQYTGPANEQFEVQVG NKVLSCNVNMVVRPTGEARTVKEGWIGVSDSEDGDENKSIM >gi|292820081|gb|ACYT02000073.1| GENE 40 43968 - 44123 221 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192618|ref|ZP_06609572.1| ## NR: gi|293192618|ref|ZP_06609572.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 51 1 51 51 80 100.0 4e-14 MILPAGDSAVTGASIVDEVPADDNWSYDCDTVVDYVKKYTFVVVDPTTPEG >gi|292820081|gb|ACYT02000073.1| GENE 41 44199 - 44741 682 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192619|ref|ZP_06609573.1| ## NR: gi|293192619|ref|ZP_06609573.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 180 1 180 180 314 100.0 2e-84 MTIPEIPANQSAIVEIPTRVEGAKRAADVVGKFSNTVTFNVPGKKVSPVMKAMRFGASAD AFARQSFSVTTKVDGELPDNAKDLEYTLTITLKNDSDPSVNKTYQATVKAGKSDSYPGAL PLGTEVTISEGDLPSADGVTLNEVESRVFDTAQGVTLKANNREATFTLSEDHLFALKLNN >gi|292820081|gb|ACYT02000073.1| GENE 42 44745 - 44933 177 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPAPKPAPKPTPMPTPTPTPAPSTPPARSRVKTGADAANVGVLAGIVALAGGSLVAVKRR QR >gi|292820081|gb|ACYT02000073.1| GENE 43 45145 - 46911 1323 588 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 18 585 5 557 561 503 45.0 1e-142 MIIHPELLPGKLYATQPWWKNAVLYQVYPRSFQDTNGDGLGDLEGIFRRLDYLADLGVDI VWISPIYRSPQADNGYDISDYRDIDPLFGDLGAFDALVTRAHALGMRIVMDLVVNHTSIE HPWFVESASSMNSERRDWYYWRDPRPGFEPGTPGAEPTNWESFFGGPAWEYDASTGQYYL HLFAREQPDLNWENPHVRDAVYDMMNWWLDRGADGFRVDAIDVISKLPGLPDGGPPRPPF GVGHECFADGPRLHEFLQEMHERTFAHHPGSFTVGEASNASPETALLFCDPERREFNMLI QFEHVNLGLENGKFSPRQLAPGELADVLTRWQDTLGTSGWNALYLENHDQPRSVSRFGDS SCYWYESATALATAYFLQRGTPFIYQGQEIGMLGGDFTTAADFRDVESVSYMERLGIDKV PEGLAAMSRDNGRTPMQWDSSPTAGFSEAVPWIDVPASAENITVAAQANDPQSILTYYRA LISARHVIPALTDGTFSRIDASAPALFIYHRSTPGSDVLVMVNLSGQRHAPLFSPEDEAM ASLPWHLYLGNTEASQTKSDEAGNHLGSEPTVTTPMKPWEARVYLLVG >gi|292820081|gb|ACYT02000073.1| GENE 44 46933 - 47667 833 244 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192622|ref|ZP_06609576.1| ## NR: gi|293192622|ref|ZP_06609576.1| adventurous gliding motility protein AgmX [Actinomyces odontolyticus F0309] # 1 244 1 244 244 324 100.0 2e-87 MSNPYSPNQQPAGGNGQYPAGQQYTQQMPVAGGYQQQGYAPQSQQGYYPQGQFQGAPYGG QPEQKSKTGLIIGIIAAVVVVILVAGVAIWALAKDDSSNDEPSASPSAPTSAAPTSVPSA DPSPSAPVAPAPAPTQSAPPVGTKPSPAPTQGTGSSGDVSTDEEYGVKLECKNAISSTVV QGKMENWIVERDGVDASGNPQYISKGQFNGTLLTGKSGTFNFTCTAVYHKDNGLYEAWAA LDGY >gi|292820081|gb|ACYT02000073.1| GENE 45 47751 - 48488 699 245 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192623|ref|ZP_06609577.1| ## NR: gi|293192623|ref|ZP_06609577.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 245 1 245 245 314 100.0 4e-84 MSNPFNPNQQPMPGSGQYPAGQQLGGAYGQQPGQQMPGAGGYGQNHGFGQQPQQGYYQQG QFPGTPYGVAPEKKKTGLIIGIIAAVLVVAIIAGIAIWALNKDDSDSDADSPTMPGVPSQ ASDPAAGTNPMQPPVGTNPTQPPVGTNPTQGAAPGNGNGGQGDMKERVLASCKEQINRKW SNASVSNENYAQPEVLPNGEKHVYTGIVTGTDTTTNKTGRWSFECKGYYVKSLDSFDTLL TYKNA >gi|292820081|gb|ACYT02000073.1| GENE 46 48539 - 49381 989 280 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192624|ref|ZP_06609578.1| ## NR: gi|293192624|ref|ZP_06609578.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 280 1 280 280 323 100.0 5e-87 MSTPYSPENQQPFQPQQGGYPQQGAYPQGDFGQQPTQQMPVAGGYGQQPTQQMPAMGGYG QQPTQQMPVAGGYGQSQGYGQQAQQGYYQQGQFQGAPGGGQPAKKKTGLIIGIVAAVVVV LIAAGVAIWWFVSGDDSSNADAAQSAPSTAAPSAGVNPSQPPVGTNPSQPPVGTNPSQPP VGTNPSQGAAPGGGSNSDLEQQAIAECTKEINDEYTNASVSGAKLELKDSYGDTQWWDYT GTLTGTDKITKKNVNTSFTCSVFYLGSTKSFTAFVIAEDY >gi|292820081|gb|ACYT02000073.1| GENE 47 49453 - 50730 1376 425 aa, chain + ## HITS:1 COG:L93420 KEGG:ns NR:ns ## COG: L93420 COG3919 # Protein_GI_number: 15674209 # Func_class: R General function prediction only # Function: Predicted ATP-grasp enzyme # Organism: Lactococcus lactis # 20 417 9 406 408 179 28.0 1e-44 MTIDYLTETRPLMPREDILPVIIGGDFGVYGIGRCFNEAFGCRCICVGSQPTESITRSHF FDVRHVSAHASDAQLLDILMTIAGEHPDKKLILMANHDIFSAFVARNMETLSRHYALPFP TEEVMERLTDKAEFARECERAGIATPGTVEVDFSGMEDEAWAAPEIPFSFPVVAKSAKGE PYDVLEFEGKRKIWFIDTAEELTQLWETLKAAGFRDTFLVQELIPGDNTAMRSITAYVDS RGEVTLIGSARVLLEDHAPTMIGNPVAMITEDFPALWRDACALLTENGYRGFANFDVKID PRDGRALFFEVNPRIGRNNWYMAAAGANPMIPMVEDLIDGKACEQTRATDEILYTLVPDS LLLHYITDEDLRARVKRIIREGRRFDLLLNPTEKDLRRNLIVWLQKQNHRRKFARYYPEP TETSY >gi|292820081|gb|ACYT02000073.1| GENE 48 50830 - 51855 1426 341 aa, chain + ## HITS:1 COG:no KEGG:Balac_1169 NR:ns ## KEGG: Balac_1169 # Name: not_defined # Def: hypothetical protein # Organism: B.animalis_lactis_Bl-04 # Pathway: not_defined # 26 335 23 327 349 179 36.0 1e-43 MTTTALVPISQEDKIAAVSGFQDRSLPIEQTCVWEAFEESQGHGVWGRYAWCEDDSKVAF ITLYKYSVRGVHYLWAKWGPAWVKEATPEREAALRADLLREIKAKDKTVAFVRLHAIYQH PDLCMPLQTISYDRTVVIDTSGKTEEAILAAMPKAGKRSIRSGLKKGKAEGVTFHEDTAN AEAVIDEYYAVMEETAKRDGFRPHPKEYYLSLLQTLGPKHARIFSMRDADGNILCWDFCL VEGIRAQAEYGASTEAGRRLRQPPVLDFLAAEFLARDGVREFDLMGAHSPRCPDLYSVGK YKSAFATQFTDVPGGWDMPIKKSTYRAMIAAKAVKDWRARS >gi|292820081|gb|ACYT02000073.1| GENE 49 51928 - 53961 2929 677 aa, chain + ## HITS:1 COG:Cgl1631 KEGG:ns NR:ns ## COG: Cgl1631 COG0441 # Protein_GI_number: 19552881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 31 667 40 674 686 748 59.0 0 MPDISLVIDGHEQTVPAGTTGTTWFEKSRDVVAIKVDGTPRDLETPFEAGTTVEAITLAS EDGLNILRHSATHVLAQAVQDVFPDVNLGIGPFITDGFYYDFGNIDAVTPELLRDLEKRM KRIVKEGQRFVRREISEEEAVVELAEQPYKLELVTTKGKGAEGASVEVGGGTLTMYDNVR RDGSVAWKDLCRGPHLPSTKLIGNGFALTKASAAYWKGDQAGDQLQRIYGTAWASKEDLV AYQERIKEAERRDHRRLGAELDLYSFPEEIGPGLVVFHPKGGILRHEIESYVTDRHKAAG FDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDEDGNVTKAGQEYYLKAMNCPM HNLIFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQASEE IRTQIAFFLSILSAFGLKDFYLELSTRDEDGKKKDKFIGSDEDWAAATKALEDACAATGL DLVPDPGGAAFYGPKVSVQVKDAIGRTWQMSTIQYDFNQPDRFDLEYTAADGSRQRPVMI HSAKLGSVERFIGVLTEHYAGAFPAWLSPVQVRLIPVAEAFDGYVKDVAAKLRERGVRVE TDLSDDRFGKKIRNASKDKIPFTLIAGGEDVEAGAVSFRLRDGSQHNGVAVDRAVELIVS HIEQRNNADQIDGLDEA >gi|292820081|gb|ACYT02000073.1| GENE 50 53967 - 54560 638 197 aa, chain + ## HITS:1 COG:ML0455 KEGG:ns NR:ns ## COG: ML0455 COG0537 # Protein_GI_number: 15827146 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Mycobacterium leprae # 27 196 24 193 206 171 48.0 9e-43 MSRDAGSDSIGTPNGPLPTEDARSLAGVPDGFGRFWTPYRMAYIRGEGKPADASDVGCPF CTAPGKDDQAGLIVYRGDSCFVLMNLFPYNSGHLLVCPYRHVSDYTELTDEERVELGNLT ATAMRVTREVASPAGFNLGMNQGEVAGAGIAAHLHQHVVPRWLGDANFLPIIAQTKAVPE LLEDARARLAAAWPKED >gi|292820081|gb|ACYT02000073.1| GENE 51 54560 - 55186 810 208 aa, chain + ## HITS:1 COG:MT2687 KEGG:ns NR:ns ## COG: MT2687 COG0558 # Protein_GI_number: 15842152 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 7 204 9 207 217 112 39.0 7e-25 MLGNHGRSITKAIFTPLARVLARVGVTPNMVTVAGTVATVAIAVICIPQGWIWQGGIVLA VVMFGDSVDGMLARMTTGGTRFGAFLDSTLDRLGDGAVFGSLTAYAVFRMDDSFVRTWAI ITGICSIVGAAAVPYARARAESVGVVAKLGIAERTDRLIIGMGTAILMSLGLPEWVFAAG LTWVAFASFVTVCQRIWFTAHNIDEGTP >gi|292820081|gb|ACYT02000073.1| GENE 52 55183 - 56109 756 308 aa, chain + ## HITS:1 COG:Cgl1628 KEGG:ns NR:ns ## COG: Cgl1628 COG1560 # Protein_GI_number: 19552878 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Corynebacterium glutamicum # 16 302 31 308 321 132 36.0 7e-31 MSFSPLSLAFSIAPRLPLRLVMRMADTGASIAARRGGAMIDRLRANMARLTGNEPSAHEV RDAVRSHIRNYAEQLMLGSCRGEPLLKGVSFEGFEALATASEDGPVVLALGHSGSWDRAG AWVCAHGRGIVTVAEKVEPPALFERFVSLREGLGMEIIGVVKGESVFSTLIERVRGRSVI VPLLADRDISGSGIEVDLGTRRALVAAGPAALATKLERPLFAACITYENETPTGADVRVR CVGPINADGQEHPDLNRVEALTQAWVDEFAAMMATKAQDWHMMQRVYVEDLDPERLARAR AEHERKNR >gi|292820081|gb|ACYT02000073.1| GENE 53 56106 - 57287 833 393 aa, chain + ## HITS:1 COG:ML0452 KEGG:ns NR:ns ## COG: ML0452 COG0438 # Protein_GI_number: 15827143 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Mycobacterium leprae # 1 372 1 371 374 290 45.0 5e-78 MKIGIVNPYSWDVPGGVGFHIRDLALKLRSRGHDVQVLTPSTSEDLPEWITSAGSSVSIP FNGSVANISVKPKALARTRRWLAENDFDVVHVHEPVVPSVSMAAAMLSTAPLVGTFHAAL GRSVSRAIASAPMRLYMERIGVRIAVSEEARRTLIEHHGGDAVIIPNGVETASFRTAQPL EQWVATDERPVIVFLGRLDEPRKGLSIFAGAIAGVLERFPGARFLIAGRGDAPEIRQAVE RFGDSVSFLGGISDEEKESLLAGATIYVAPQTGGESFGIVLVEAMAAHTAVVASDIPAFR AVLEDGRAGALFERGNSDSLARTLIDLLTDRDRLEELSAAGARSSAQYDWEVVADKVFEV YKLAIAMGSPAESGTRRARDLIRGRGEEGEELA >gi|292820081|gb|ACYT02000073.1| GENE 54 57284 - 57898 472 204 aa, chain + ## HITS:1 COG:no KEGG:Cfla_1788 NR:ns ## KEGG: Cfla_1788 # Name: not_defined # Def: hypothetical protein # Organism: C.flavigena # Pathway: not_defined # 29 195 27 200 225 77 37.0 4e-13 MISLSPWLLVAIVFAVIALGVVAGFAITRARRLDRLHQRILASRDSLSRLLLRRASEADL LTRSVGLENSGLADAARAYIQDGGDQLTTDGLDRRTAAQRQGNRVEVATRLERASALSRA IRETLIPDERARIASDPQASARLEALDATCYRIELTRNVHNVDVAGVRALRSARMVKLLR LAGHAPIPEPIDFDDDTRTGGRGY >gi|292820081|gb|ACYT02000073.1| GENE 55 57867 - 59201 796 444 aa, chain + ## HITS:1 COG:PAB0037 KEGG:ns NR:ns ## COG: PAB0037 COG2339 # Protein_GI_number: 14520290 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pyrococcus abyssi # 84 320 6 229 249 61 24.0 4e-09 MTRERVDEVTDMHATHWGGPGEDYRLSKISSATIDSTDGVSAPAPDDAAPVWQPPKAAHS FPWFEVVMTTIGVLGTIGIIIYGLAPESSSVTAFVKTTLLSLVALVIVVGFLQRIDRWEP EPWTTKLAMFLWGGGVATLTSMITNTALHTDIAFTIGDLRRAEALAMSFIAPLVEETFKG IGVLIIVVVRRNSINSVLDGVVYAGFSAAGFLFFEDILYFLRTEGQGTKTLVLVFVLRAL AGPFLHVMATSMTGIGLALALIKFRRGWSKTAIVVVFWFAAMLIHFAWNGSIALPASGTG FIVMYLVVGIPGFVLWSVLLLRAARREALHIRDGLVPYVRTGWILPGEVSMATDRRARQA AFKWTAQGGRDAKRAMRAFLSDLASLGLDQRLMARHGADRSRIENDRRMLADAVEKRREF LRLTSIAEQQKDVTNAVAGRAQVA >gi|292820081|gb|ACYT02000073.1| GENE 56 59381 - 60229 939 282 aa, chain + ## HITS:1 COG:Cgl0156 KEGG:ns NR:ns ## COG: Cgl0156 COG2339 # Protein_GI_number: 19551406 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 80 273 73 261 321 60 31.0 3e-09 MTHAVTIRPRSWALVACSLILIALSVRAALYELTEALEGISSSDAWLAVGASMLSAVVGL VFLAWAARLKPTMLSWLAAFGWGTGGALIFAGYGNTVIDSAVAASNLSDDAVDVVTSVVT GPLVEEIGKGIGVLALVLAARKVLDRPAQGGVLGALVGLGFAWGEDVGYYVSALEDGMSG LWQSFLARALLGAYGHAIFTGVFGYALAWAVLRAQNVLVGLLAAAGGFVAALALHAQANG IGFLAPEDSWNLTYGAIEIPVLVVSVALLVWGLRRHRSTLEA >gi|292820081|gb|ACYT02000073.1| GENE 57 60226 - 60753 592 175 aa, chain + ## HITS:1 COG:Rv2609c_2 KEGG:ns NR:ns ## COG: Rv2609c_2 COG0494 # Protein_GI_number: 15609746 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium tuberculosis H37Rv # 18 153 1 144 172 81 36.0 6e-16 MSALDWPLDADGYPHREAARVLLFDDSGRVLLAKGHDEDQPERFWWFTIGGGIEEGEDPR GAAVREVFEETGIELSPDDLVGPVLYRTAEFDFLAVTARQDEWFFIAQAPSTALSRDGWT ELERSVIDTQAWWDIDEAAAQIDGEIYPAQILEYARAWRDGWDGHMIRLTDTREP >gi|292820081|gb|ACYT02000073.1| GENE 58 60763 - 61446 646 227 aa, chain - ## HITS:1 COG:L0085 KEGG:ns NR:ns ## COG: L0085 COG0560 # Protein_GI_number: 15672587 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Lactococcus lactis # 17 217 2 202 216 200 51.0 2e-51 MTHRLDEPGAPLLCASGAPGLVVTDVDSTLISQEVIEELAEAAGTRARVAEITSRAMNGE LDFAESLRERVATLAGVPESVFGGVLSAITPTKGARELIDAVHRAGGKFGIVSGGFEEVV APLALSLSIDFYAANRLEVADGVLTGRVLGRIVTSRVKVECLRSWASSLGVPLERTVAIG DGANDIPMMHEAGVGIAFCAKPAVREQVSVQLNTPDLSLAIAPLGLA >gi|292820081|gb|ACYT02000073.1| GENE 59 61449 - 62684 1626 411 aa, chain - ## HITS:1 COG:MT1251 KEGG:ns NR:ns ## COG: MT1251 COG0448 # Protein_GI_number: 15840657 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Mycobacterium tuberculosis CDC1551 # 5 391 6 387 404 444 61.0 1e-124 MAKNHVLAIVLAGGEGKRLMPLTDDRAKPAVPFGGHFRLIDFALSNIVNSGYLKIVVLTQ YKSHSLDRHVTKTWYTSPLLGNFIAPVPAQQRRGPHWYLGSADAIYQSLNIVDDEQPEYI VIIGADNIYRMDFSQMVQHHIDSGLPATVAGIRQPIELASALGVIDGENGVVKNFLEKPK NAVGLPDDPTKVLASMGNYVFTTKDLVNALREDAADPDSKHDMGGNIIPWFVERGECGVY DFQDNDVPGSTDRDRDYWRDVGTLDAYYEANMDLISVHPVFNLYNRDWPTMTMIDGSLPP AKFVYGDADRLGHAIDSFVSPGVIVSGGEIVRSVISPNTYVHSWAKIEDSVVMHGCRIGR SSRVVKTILDKNVVVEEGAVVGVDLDHDRERGFTVTESGITVVPKGAVVRK >gi|292820081|gb|ACYT02000073.1| GENE 60 62757 - 64079 1318 440 aa, chain + ## HITS:1 COG:MT1250 KEGG:ns NR:ns ## COG: MT1250 COG0438 # Protein_GI_number: 15840656 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 34 439 1 385 387 367 51.0 1e-101 MSIDCYTVSFSTSGDVRSDTMCLTRRSRRKDPTMRVDLLTREYPPHVYGGAGVHVLELAK VLRGLVDDLRVQAFDGPREPGTDGADPGVTGHADLPQLAGANAALRTLGVDLEIAAACEG SDLVHSHTWYANFAGHVASLLGDIPHVISAHSLEPLRPWKAEQLGGGYRLSSYVEKTAYE AASAIVAVSNGMRDDILRCYPGVDPERVHVIHNGIDLNKWHAPEGEAGEELRARVLAEHG IDPSRRTVVFVGRITRQKGLPYFLRAAQLLPDDVQLVLCAGAPDTPEIAAEVEGLVAELR ARRSGVVLISEMLPQPEVAAILSSAQVFITPSVYEPLGIVNLEAMALGLPVVGTATGGIP DVIVDGETGYLVPIEQKKDGTGTPLDPRAFEEAMADRLVRILDDPELGRRMGEAGLVRAR DHFSWEAIGVKTAELYRSLV >gi|292820081|gb|ACYT02000073.1| GENE 61 64116 - 64904 197 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 233 1 224 311 80 27 4e-14 MTYVLNLSHVSLQRGDTQVLSDVSWSTRPRQHWVIVGPNGAGKTTLARVASGRIAPDSGE VTVSETDLSHADPSEIATRVGLSSAAVGAKIVPTQSVLDTVRSAAWGLAVAHEEEYEAVD DERAHALMDIFGVSHLAQREFSTLSEGEAQRVLLARALMTDPEVLILDEPTSGLDLGARE LLIAALSEIMQGSKSPQVILVTHQIEEIPVGVTHCAIMSNGVITHQGPIEDVLTGVNLSE VYGMPLLAGYTDGRWWARGVSA >gi|292820081|gb|ACYT02000073.1| GENE 62 64924 - 65391 582 155 aa, chain + ## HITS:1 COG:Cgl1497 KEGG:ns NR:ns ## COG: Cgl1497 COG1585 # Protein_GI_number: 19552747 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Corynebacterium glutamicum # 4 136 5 138 142 59 32.0 2e-09 MWWLWILGALLCGIIEVMSVSFVFLMFAIGALAAGVAGAFGANLTIQVIVFIVVSIALLV ILRPFLKGRIDRSSGYVPSNTDGLIGKTGYVTEAVGERHGRIQFSGGEWSARTEGPTLPV GTEVRVDRIDGATAVVSALDPASAAPTHPYGDSIS >gi|292820081|gb|ACYT02000073.1| GENE 63 65438 - 66397 1299 319 aa, chain + ## HITS:1 COG:MT1533.2 KEGG:ns NR:ns ## COG: MT1533.2 COG0330 # Protein_GI_number: 15840949 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Mycobacterium tuberculosis CDC1551 # 8 313 3 309 381 317 54.0 2e-86 MNSGNIIGNIAFIVVLALVVFVVVSLARAVRIVPQSQAYVVERLGRFQAVMQGGFHLLVP FVDRVAARIDLREQVANFPPQPVITADQAMVSIDSVIYFQITDPRSATYEVANFLQAIEQ LTATTLRNLIGSLDLEQTQTSRESINKQLRGVLDEATGPWGIRVTRVELKSIEPPPRVLA AMEQQITAERTKRATILTAEAEREAQIKKAEGAKQAAVLAASAQQEAQVLQAKGQKEALI LQAEGSRQAQILRAQGESEAIQTVFAAINAGKATPELLSYKYLEMLPKIADGQASKLWML PSDLTGALESISKGFNLGK >gi|292820081|gb|ACYT02000073.1| GENE 64 66467 - 67807 1330 446 aa, chain + ## HITS:1 COG:MT2280 KEGG:ns NR:ns ## COG: MT2280 COG0174 # Protein_GI_number: 15841714 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 443 1 446 446 513 57.0 1e-145 MDSHQEYVLREVAQKNIRFIRLWFTDVAGVLKSISIDPGELEEAFSEGIGFDGSAVEGLT RVYESDMLLKPDASTFQLLPWRSNEDPVARMFCDVLMPDGRPAPSDPRGVLERAVQRAAD AGFRVMIHPEIEFYLLRQPVTPDRMIPVDQAGYFDHVARGDSNDFRRRAVRMLEDMAIPV EFSHHEGGPGQNEIDLRAVDPVRAADNIMTARTLIEEVALREELVATFMPKPFIEHPGSG MHTHLSLFEGEENAFFSPAGQYRLSTTGRQFIAGLLAHAEEIAAITNQHVNSYKRLWGGG EAPSYVCWGHLNRSALVRVPLYKPKKAAAARIEYRAPDPSANPYLAFAVLISAGLDGIEK KMELMPEAEDNVWDLSDRERQVMGIHALPASLADAVRAMKSSDLVASTLGEQVFDYVIRN KRKEWTEYRQQITRQELEQFLKVVPR >gi|292820081|gb|ACYT02000073.1| GENE 65 67804 - 70740 1778 978 aa, chain + ## HITS:1 COG:Cgl2179 KEGG:ns NR:ns ## COG: Cgl2179 COG1391 # Protein_GI_number: 19553429 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Corynebacterium glutamicum # 35 975 53 1035 1045 558 37.0 1e-158 MTPDELRIAGFLDPRRALDYFEELPGGAEVWAADLGASADPDQALLAAIRLHEADSGLVR GLVDDSRARARLCAVLGGSQWLGDYVVAEPGRARSTWEDPGDAARVMLASVGATRGERGA FVASEDARVDDLRGAYRQVLLYLAADDLTSDDPEGFMPQVGRRIADLVDATLEAGLALAR RDIDPQGRIPFAIIAMGKTGARELNYISDVDVVYVAEAGADGDERVALEIATRLAAATAS ACSGPGTEAPLWTVDANLRPEGRNGALVRTVESYRQYWDKWAQTWEFQALLKARACAGNE AVGRAFEEAAQPYVWSAATREGFVEAARAMRRRVEDNISRSHASRELKLGRGGLRDVEFT VQLLQLVHGRTDAFLRVRSTLEAIEALREGGYIARSDAQQLASCYRFLRAVEHRTQLPRM RRTHLIPDKERELRVLGRAMGTARFADAESISAAIDEVRPRVRALHEDVFYRPIIAATAS LSEDEVSLHADGARDRLAAIGYRDPAGALTHIRALTQGTSRRAAIQRHLLPVFISWLAGG ADPDMGLLNFRILSEDIGDSHWYLALLRDSGVAAHRLTTMLPNSRWIAEALAKRPEAVAW LDDDGELAPREPHRLAREVAALIDRHEDAAEAAARVRAVRTRELTRCAMSDLLGGVDPRG NAIADATDAAILGALAIAQREETERWGEERANVVFVAMGRYGGRECSYASDADVVALHEA VGGATEAEAAASATVIVNRVKNLLGSATNQLGIVVDLDLRPEGKNGPMSRTIESHREYAQ RWASTWERQAAVRARPIGESGLADSARELFAELAYRGVSESEVRDIRLLKARMENERLPR GIEPARHVKLGPGGLTDVEWTIQLIQMRAGMNNPALRTPSTTQAILSAREHELISAQDAQ TLLDAWDMATRIRAANTLASGRMSGVKLDVLPRDSAELRALAAILGYGSGGLNALEDDWL RAGRKARAVMERLFWEQQ >gi|292820081|gb|ACYT02000073.1| GENE 66 70737 - 71408 635 223 aa, chain + ## HITS:1 COG:Cgl2835 KEGG:ns NR:ns ## COG: Cgl2835 COG0406 # Protein_GI_number: 19554085 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Corynebacterium glutamicum # 2 219 4 219 223 70 31.0 3e-12 MKIVLVRHGQTPANRLGALDTVRPGLGLTPEGLLQAQRLADRWESEVAPPPTVIALSGLH RTRLTAAPLASAYGLTPQVHPGIRELRSGDLEMAADPASQSLYVRTTLSWCAGDLDNRMP GGESGREALARSLETVRRVGLAAREQAGDEAVAVFVIHGALTRLLATWLSTDIDEDLVSK HFMSNTGTSTFEWAPDFTPSSADELAKGLRALIWNDRPLDQWS >gi|292820081|gb|ACYT02000073.1| GENE 67 71396 - 71629 274 77 aa, chain - ## HITS:1 COG:no KEGG:CMS_1968 NR:ns ## KEGG: CMS_1968 # Name: not_defined # Def: hypothetical protein # Organism: C.michiganensis_sepedonicus # Pathway: not_defined # 12 69 21 79 85 62 47.0 3e-09 MALGVEAASGICSARECTNAAIYRIDWRNPAIHHARTKTWLACEDHLSYLRNYFTYRSFP FEVSAFVAPDQEQHQDH >gi|292820081|gb|ACYT02000073.1| GENE 68 71662 - 72144 470 160 aa, chain + ## HITS:1 COG:MT1313 KEGG:ns NR:ns ## COG: MT1313 COG2062 # Protein_GI_number: 15840723 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Mycobacterium tuberculosis CDC1551 # 4 157 8 167 168 65 32.0 3e-11 MPTLVLVRHAQAAYSYPDHTRPLTRVGVDQAARLGGVLSREIGAFDVAVCSDATRAQQTF AQISQRVSIRDSWFDRGVYNADEEDILTLARTFEGSNALIVGHEPTISGAGYVLACEDDR SEVARGVPTATALILTFDGTWENLTPSSCTLRAVLTPLTR >gi|292820081|gb|ACYT02000073.1| GENE 69 72293 - 73054 1179 253 aa, chain + ## HITS:1 COG:MT2678 KEGG:ns NR:ns ## COG: MT2678 COG0217 # Protein_GI_number: 15842143 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 252 1 251 251 324 69.0 8e-89 MSGHSKWATTKHKKAAIDAKRGKLFARLIKNIEVAARTGGGDPAGNPTLYDAIQKAKKNS VPADNIDRAVKRGSGAEAGGANYETIMYEGYGPGGVAFLVECLTDNRNRAASDVRLGFTR HGGSLADPGSVSYLFSRRGIVEVPAADGVDEESIMMAVLDAGAEEVEDAGELFIVESDPK DVVAVRTALQDAGIDYDSAEVQFVASTEVELDLEGALKVNKLIDALEDSDDVQNIYTNMS LSDEVRAQLEEQE >gi|292820081|gb|ACYT02000073.1| GENE 70 73057 - 73959 1431 300 aa, chain + ## HITS:1 COG:Rv2606c KEGG:ns NR:ns ## COG: Rv2606c COG0214 # Protein_GI_number: 15609743 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Mycobacterium tuberculosis H37Rv # 3 300 2 299 299 469 85.0 1e-132 MSDSTAKREVGTPQVKRGMAQMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRA QGGVARMSDPDLIEGIIEAVSIPVMAKARIGHFVEAQVLQSLGVDYIDESEVLTPADYTH HIDKWNFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRKIRDEIRHL TSLPEDELYVAAKELQAPYELVAEVAREGRLPVVLFTAGGIATPADAAMMMQLGAEGVFV GSGIFKSGDPAKRAAAIVKATTFYDDPSVIAEVSRGLGEAMVGINVDDLPVDHRLAERGW >gi|292820081|gb|ACYT02000073.1| GENE 71 73953 - 74546 654 197 aa, chain + ## HITS:1 COG:ML0474 KEGG:ns NR:ns ## COG: ML0474 COG0311 # Protein_GI_number: 15827156 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Mycobacterium leprae # 4 194 31 219 223 194 57.0 9e-50 MVTIGVLALQGDVAEHARALENSGARALLVRRVSELDQVDGLVIPGGESTTMSNLLLSFG LFDTLNDRIASGLPVYGTCAGMIMLASSILDGREDQRSFGALDMVVRRNAFGRQVDSYEE DLDVEGVKGGPFHAVFIRAPWVESVGEGVEVIARAGNSTDGPIVGVRRGNIMATSFHPEV GGDDRIHAMFVDMVARA >gi|292820081|gb|ACYT02000073.1| GENE 72 74546 - 75175 504 209 aa, chain + ## HITS:1 COG:FN0214 KEGG:ns NR:ns ## COG: FN0214 COG0817 # Protein_GI_number: 19703559 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Fusobacterium nucleatum # 1 152 1 151 190 134 44.0 1e-31 MRVMGIDPGLTRCGLGVVDVDASRRASLVYVGVARTDKDLATHFRLRAIADAIDSVIERY EPEVVAIERVFAQDNLQSVTTTMQVMGAAMTCVGRAGLPMAVHTPSEVKSAVSGNGNADK AQVQAMVARILGLAKAPKPADAADALAIAITHAWRGTGLLGAPEDSSVAVSISGRLTARG SMTPAQKAWAEAQAAQRRTGAVDPRRRRG >gi|292820081|gb|ACYT02000073.1| GENE 73 75231 - 75836 609 201 aa, chain + ## HITS:1 COG:MT2670 KEGG:ns NR:ns ## COG: MT2670 COG0632 # Protein_GI_number: 15842133 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 200 1 196 196 132 45.0 5e-31 MISILRGTVASVGLDHIDIVVGGIGFRVHVTPAFAQGASRDQEMTVFTSMIVREDLMTLY GFESADERDVFTKLLSVSGIGPKIALAALAVLRPDDLRRAVRDQDLSALQRIPGVGKKSA QRMALEIGDKLGTPAALPGAQTAAAPAPTEDAVASEVSAALVGLGWSEAQAAKAIEKLAG SGLGASDMLRAALVTLGGGRG >gi|292820081|gb|ACYT02000073.1| GENE 74 75841 - 76881 1083 346 aa, chain + ## HITS:1 COG:Cgl1620 KEGG:ns NR:ns ## COG: Cgl1620 COG2255 # Protein_GI_number: 19552870 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Corynebacterium glutamicum # 21 338 39 356 363 415 69.0 1e-116 MDSGFDVDAMRIVAPDAGELERAAEAALRPKKLSEFVGQRVVRGQLQLVLDAARMRSASP DHVLLAGPPGLGKTTLAMIIAAEMGTSLRLTSGPAIQHAGDLAAILSGLQEGDVLFIDEI HRLARTAEEMLYLAMEDFRVDVVVGKGPGATSIPLTLPPFTVVGATTRSGLLPAPLRDRF GFTAHLEFYETDELQSVVTRSASLLGSPIDAQAAHEIASRSRGTPRIANRLLRRVVDYAQ VHGDGQLTLEAARGALELFEVDPSGLDRLDRAVLEAICRRFAGGPVGLTTLSVTIGEEAE TVETVAEPYLVREGFLVRTNRGRMATAKAWAHLGLTPPAPDGGLFD >gi|292820081|gb|ACYT02000073.1| GENE 75 77061 - 77468 527 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508892|ref|ZP_02044534.1| ## NR: gi|154508892|ref|ZP_02044534.1| hypothetical protein ACTODO_01403 [Actinomyces odontolyticus ATCC 17982] # 1 135 1 135 135 236 99.0 3e-61 MNNYMLLIMAAFLIVFMMWSSRSRRQQMQKLEQEKRDQLAAVTPGEWVRTRVGFWGRFVD LDGDIVVLETSNGHEMYWEREFIAEIGGQPPLADAEQAEADADEVETVEEDASVLGLDQE DAQSFDVRDTDEQQK >gi|292820081|gb|ACYT02000073.1| GENE 76 77495 - 79459 2547 654 aa, chain + ## HITS:1 COG:Rv2587c KEGG:ns NR:ns ## COG: Rv2587c COG0342 # Protein_GI_number: 15609724 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Mycobacterium tuberculosis H37Rv # 8 567 7 548 573 213 32.0 1e-54 MASHKRRPVRALVTLTVAIVAACAALAIGHFVKGVSPYPDLALDLKGGTQLILTPTPTSE GQRAITEEDITQAIAIIRNRIDASGVSESEISSMGSSNIMVSIPGTPSQEQLDLIRSSSQ MNFRPVLRIGPAQGILQNQQQPQVDNPQSGAQSGAQSGEQSGAQSGEQSGAGAADTAQSG IQSTALDEATARGAADADGDGVLSDTPATTPENASDLAWVTEQVMYDFLTLDCSASADVK RVEGAADKPYAACDESGQVKYILGPVAVPGSDLEAASAAIATNGTGQSTGQWIVSLRFNH EGAEKFKETSTILYGYHDSDPQGSSYRGSPDRNSFAVVLDGTVITAPSMQAIITNGEAQI SGNFTAQSARALANQLQFGSLPLNFEVESEQQISATIGTDHLTVGLWAALIGFLLVILYL IWQYRGLAIISAGSLVVASVITYLVITLLSWAMGYRLSLAGVAGLIMAIGVTTDSFIVYF ERVRDEVRDGRPLRAAVEEGWDRAKRTILISDAVNMVAAVVLYLLAVGGVQGFAFTLGIT TIIDIAVIFLFTHPMMELLIRTRFFGEGHKLSGLDPEHLGAKNSLVYAGRGRVVVRGESA TTKDKSDEAGDGLSIAERRRAARLAAAKAEEETVDDASVETTDSAAGVTEEEEN >gi|292820081|gb|ACYT02000073.1| GENE 77 79461 - 80549 1495 362 aa, chain + ## HITS:1 COG:Rv2586c KEGG:ns NR:ns ## COG: Rv2586c COG0341 # Protein_GI_number: 15609723 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Mycobacterium tuberculosis H37Rv # 11 335 51 382 442 200 39.0 5e-51 MMSFAQWGNALYSGDKSYAVVPKRKVFVGLAAAVLVLGFALVAILGLNRSIEFTGGSQFD VAHVSDQSESFASRAVTSTGLVEGTPKVTRVGTDSVRIQTSSLDSAQTAQMRDALASAYG VDATEVQSSSIGPSWGSSVTTKAAQSLVIFMALIALLMTVYFRSWRMAASALLALVHDIA VTIGVFAILQVEVSPATVIGFLTILGYSLYDTVVVFDKVRELTSDVYEQKHYTFAEYVNL AVNQTMVRSINTSVVALLPVGAILIIGSVALGPGTLVDISLALFVGMIAGTYSSIFIASP LLVTFQELSAKTREHNAAVDRARQGRHAADTPGASASVKVAPIKPGKRLGNENQPHRKKN HR >gi|292820081|gb|ACYT02000073.1| GENE 78 80546 - 81085 639 179 aa, chain + ## HITS:1 COG:AGc4069 KEGG:ns NR:ns ## COG: AGc4069 COG0503 # Protein_GI_number: 15889512 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 174 22 188 198 154 48.0 7e-38 MIGELGERIATLVRSNMLEIPDFPEPGVLFRDITELFANGPAFKELVELIGARYAGRIDA VAGLESRGFILGAPVAAELGLGMLTIRKAGKLPGHVIGVDYELEYGTARMEMHPESVHEG QRVLIIDDVLATGGTANAAVKLLRQCGASVEAVAVLLELDALGGRSVLTDVTVESALHL >gi|292820081|gb|ACYT02000073.1| GENE 79 81284 - 83464 1981 726 aa, chain + ## HITS:1 COG:MT2660 KEGG:ns NR:ns ## COG: MT2660 COG0317 # Protein_GI_number: 15842122 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Mycobacterium tuberculosis CDC1551 # 5 722 75 789 793 816 56.0 0 MRALRANHPKADISVVERAYRTAEEHHRGQMRKSGEPYITHPVAVATILAEMGMTTPTLV AALLHDTVEDTDYTLEQLAAEYGEAIANLVDGVTKLDKVHYGAAAQSETLRKMLVAMSRD IRVLLIKLGDRLHNARTWRFVPAKSAAKKAKETLEIYAPLAHRLGMNMVKWELEELSFKT LYPDIYEEIDRLVTERAPQREEYLRDVIDQIEEDLRRSGTKGTVSGRPKSHYSIYQKMIV RGKAFDEVYDLVAVRVLVESIKDCYGVLGALHGRWNPIPGRFKDYIAMPKFNLYQSLHTT VIGPGGKPVEIQIRTFDMHERAEHGVAAHWKYKQNPNASSGDADRMSSDEQANWLRALVE MERETGDPEEFLDSLRFEIAGDEVYVFTPKGQVIVLPARSTPVDFAYAVHTEVGHRTVGA KVNGRLVSLDTRLESGETVEVVTSKSDKSGPSRDWLAFVASPRARSKIKAWFSKERREEA VEAGKEALARAMRKQNLPLQRLMSHESILSVATSFGYPDVSGLYAAVGEGHISAQNVVSK LVDNLGGGDGTEETLSEAVTPGSQKPRSEASGDAAITVAGLSPNEIWVKLAKCCTPVPGD DIVGFITRGQGISVHRSTCANAVRLGQLQPERFVDVSWNEKGLGAPFRVQIEVRALDRGG LLSDLTRVLSDYRVNILAAALKTDGDQVASGNFSFELADLGHLNAVLSALRRVDGVFEAV RLGADS >gi|292820081|gb|ACYT02000073.1| GENE 80 83630 - 84964 1970 444 aa, chain + ## HITS:1 COG:no KEGG:HMPREF0573_11739 NR:ns ## KEGG: HMPREF0573_11739 # Name: not_defined # Def: ATPase involved in DNA repair # Organism: M.curtisii # Pathway: not_defined # 2 438 58 497 504 333 48.0 8e-90 MTTTPIPNNETAPEAAPSTIEEAAVSTTIAASEVPEHPFARIGEDGTVYVKDGDEERVIG GFPEGIPASPYALYERRYADLEATIKLFEDRLGTLSPRDIDQTLATLREQVASPNVIGDI PALRERVAAVEKAAEERKEIAREERKAAKAVALAERTSVVERAEAIVSQDPAKTHWKQSG QTLRDLLDEWKNLQRRGPRLEKAIEDELWKRFSSARTQFDRHRRQFFSQLDQAQSEAKRV KEALIAEAEALSSSVDWSRTSGAYRELMNRWKAAPRASRKEDDELWARFRAAQQVFFDAR RAKDEATDAEYRDNLVAKEVILVDAEAILPVTDIDRAKAQLRQIQDRWEEVGRVPSADLH RIEGRLRAVEAAVREAEEKEWRRTNPETRARAAGMVGQLEEQIAQLERSLSEAEAKGDEK AARNVREALETKRAWLAQISSSME >gi|292820081|gb|ACYT02000073.1| GENE 81 84966 - 85685 632 239 aa, chain + ## HITS:1 COG:Rv2581c KEGG:ns NR:ns ## COG: Rv2581c COG0491 # Protein_GI_number: 15609718 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Mycobacterium tuberculosis H37Rv # 7 232 7 219 224 97 32.0 3e-20 MRLHVIPSPFYAANGLVLVPSGAGTALVVDPSAGIQHLIREVLELEGVSVGAVLLTHGHP DHVWDAAAVSTWGVDGGTVPVYVPGPDMYRMDAPASFLPMPLPDFVGEWVKPADLREVPS DSFEVCPGVWLRMVPAPGHTEGSAVFLGESPLDIRVNNQSFYRSDEAVPWAMSADVLFKD SVGRTDLPGGDETQMRHSLRTISNALDPRTVLVPGHGPATTLADEIRSNQYLIRARRIG >gi|292820081|gb|ACYT02000073.1| GENE 82 85713 - 87065 1821 450 aa, chain + ## HITS:1 COG:all5012 KEGG:ns NR:ns ## COG: all5012 COG0124 # Protein_GI_number: 17232504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Nostoc sp. PCC 7120 # 7 428 13 447 462 268 38.0 1e-71 MARTSLSGFPEWLPEGRIIEMHVLDELRRVFELHGFAGIETRAVETLEQLEAKGETSKEI YVLERLQALKAAAAGARAPKDKGMGLHFDLTVPFARYVVENANELDFPFKRYQIQKVWRG ERPQDGRFREFTQADIDVVGNGELPFHFEVDLPLVMAEALNNLPIPHVRVLVNNRKVVQG VCESLGVTDVEAALRGLDKIDKIGPEGVAAELAQSGIDGDQASVLLQMAQIRTSESSEVR ARLADLGVGGELLDEGLKELTELLDTANKRMPGAVVADLKIARGLDYYTGSVYESEIEGH EALGSICSGGRYDSLAKDGKRTYPGVGLSIGVSRLVSRMISAPMVRASRKVPTAVVVAVI AEDQRERSEAIAAVLRSRGISTDVAPSAAKFGKQIKFADKRGIPFIWFPGEEGSADTVKD IRSGEQVDADPHTWVLPEADAVPTIEKVTD >gi|292820081|gb|ACYT02000073.1| GENE 83 87066 - 88718 836 550 aa, chain + ## HITS:1 COG:no KEGG:Arth_2523 NR:ns ## KEGG: Arth_2523 # Name: not_defined # Def: putative ABC transporter # Organism: Arthrobacter_FB24 # Pathway: not_defined # 25 517 24 537 571 278 37.0 4e-73 MSLTAVEAARSLAHALEETLHAIPEGSRGDAERALRRLQDVVLPRLEDADAPVLVVVGGS TGSGKSTLVNSLLGRNVSRAGAVRPTTRRPVLVCAPKAREWFLSDRVLPRLAKSEGSGGD SLDAITIAVEKTLWPAVGIVDAPDIDSVEDGNRRLAAELLDGADLWVFVTTAARYADAVA WKHLEEAASRGLRVAIVLNRVPPGAAQEIREDLASLARRRGLGEVAIYTVEEQPLSDGRL SAEVIAPIGSYLEGIGRDTEERAAIVRRSLSGAVASSLEETTRALEAARECNREFEAAAG DIEQLVASYAREVSSSSSDDVLRGEVSARIAEVLGSWDMSKTVSRVFSGLSSRVMGALRG QAAPDVQVQRDLTGGLAQRLADQYHRAWGESLRRARTVVDTSSFDELLDVDAAEQRARTV AQEWTREVTQIIRGQAESSRVSGRMLAGGINVVTVSLMVAAFTMTGGLTGVEVGIAGASA ALSQAILEAYFGERTVRSLAEQARAALERLAGESLSAVVAPVSASLDRASDRVLIDKLAV AEERAREVLV >gi|292820081|gb|ACYT02000073.1| GENE 84 88715 - 90304 930 529 aa, chain + ## HITS:1 COG:no KEGG:Mmcs_1548 NR:ns ## KEGG: Mmcs_1548 # Name: not_defined # Def: putative ABC transporter # Organism: Mycobacterium_MCS # Pathway: not_defined # 15 516 10 512 525 192 34.0 3e-47 MRRATNPVASAAQQLDEMCTLAAPDLDQQTLAHIRDLIDVTAERSEVDPSWCVIGMLGGT GAGKSSLVNALSGGEVVTAGVRRPTTNEACAVLPRGREPQELLGWLDIGRRVEAPQALPG DTVVVDLPDIDSVDARHADIADRLASRVDALFVVVNPQKYADARLHDEWLVRLRSSHASV TVVLTHIDTISLPERDAIEQDLHRLLSDRGMADAEVFAVSATTGEGMRTLIKHLTREAER VSRQASRARAALREASRILRESLELTGTVRGLETDGLAAELAGTAADLAGAPIIAEAVAD STLRAGRRAGGWLPLRWLARTGVDPLRRLHLDDESRAEGATTPTLPTRSASDEAAFVNAV RGAIGERAQGRPARWRAALVERALCGAREVPDAAHREVAEHIRVSTGAPALCRALGRAQL LAWLGVVVGVAWIVLVHLGRAVLIDVRVPALGPIPLPTALVALCLLITVLCACASRALAR WAASRRRRVVMRDLRGLCRDAVDRLVVAPLRSEDNRQVTIASFLARLPV >gi|292820081|gb|ACYT02000073.1| GENE 85 90535 - 92703 2472 722 aa, chain + ## HITS:1 COG:XF0252 KEGG:ns NR:ns ## COG: XF0252 COG0513 # Protein_GI_number: 15836857 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Xylella fastidiosa 9a5c # 47 614 17 572 614 447 47.0 1e-125 MPSDDFMERADDEREMTAIADDIDDLDDAREFGDDHADEEDTDTVTFASLGLPEEILAAV TDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLA PTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRGAQVVVGTPGRVIDLIE KGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSATMPAAIEKVAREH LKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQHIKEGQEEADAAIVFV RTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLDVLVATDVAARGLDVE RISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGRLRRIEKLTGTEMEEVE IPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISVEDIAAALMATAVGDEG PAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDKDRPLKGGANGARRRAGGRPAPG SGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEIYPTFSLVDITADLSSEQLSR ISKGYVSGRQLCIRVDEGPGGRSHGDRDGFERRERRDFDRDNRGRGGYGDREDRFGDRDE KRPHRFEKGDGSRPRRSVRTERWEKDIKRARREREGGRDGGWDRDGSRDGGRRHFGKRRY DD >gi|292820081|gb|ACYT02000073.1| GENE 86 92691 - 94103 1410 470 aa, chain - ## HITS:1 COG:DR2098 KEGG:ns NR:ns ## COG: DR2098 COG0477 # Protein_GI_number: 15807092 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Deinococcus radiodurans # 20 396 27 403 462 103 28.0 6e-22 MPTAGSSSPARSSWTPSEIGLAIGSVLLITLVAFEELAATTIMPAVVESFDAAAWYPIAS GAALATQLSATVVAGALADWKGPRFVLLAGLVLFAIGLVVCAAGTNVVVFVIGRALQGLS GGLLIVPLYVLVGAVASPHHRPSFFASFSLAWVLPSLVGPAIAGHMTQEWGWRYVFGVVP LFVAVAALPIAYVLRSIPTAQGQRSPVLASLSRDAGLVGIGVMLLQLAGALSSPFAQFAV FALGACITAWALPRLLPRGTFMSRRGMPSAILARLSALASQVGLAVMIPLILQRVHGWSE ASSAWWVTLGSITWSIGAVGQARVHDAHPRRRLPVIGGTLMAIGAIPIGALLFPSIPVWV ALIGWLLVGLGVGLVHAPLSVMALEVTPEAKHGRVASWLQVADSAGPALELALVSVAMSA WAATATVGGAAYAPYWVIAAVLAILTVVAVTRLRPSSERITGEAASAQSS >gi|292820081|gb|ACYT02000073.1| GENE 87 94206 - 96011 2576 601 aa, chain + ## HITS:1 COG:Cgl1597 KEGG:ns NR:ns ## COG: Cgl1597 COG0173 # Protein_GI_number: 19552847 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 591 1 593 608 878 73.0 0 MLRTHNIGTLGTDLVGQTVTLTGWVDRRRDHGGVAFIDLRDASGIAQVVVRDERVAHELR SEFVLKVTGEVCARPEGNENPHLATGAIEVMGDDIEILNTSAPLPFQVSSNAEDSGNVGE ETRLKYRYLDLRREPEQYAIRLRSKVSRAAREALYARDFVEIETPTLTRSTPEGARDFIV PARLSPGSWYALPQSPQLFKQLLMVAGMERYFQIARCYRDEDFRADRQPEFTQLDIEMSF VDQDDVIEVAEDVLKNVWALIGYDLSTPIPRMTYKDAMERYGSDKPDLRFGLELTELTEY FKDTTFRVFQAPYVGAVVMPGGGSQPRRTFDKWQEWAKARGAKGLAYVTIAEDGTLGGPV AKNITEAEREGLAAATGANPGDCIFFAAGKPTPSRELLGAARLEIGKRCDLIDPDAWAFT WVVDAPLFKPTGDAEAEGDVALGHSAWTAVHHAFTSPKPEWVDSFDKDPGNALAYAYDIV CNGNEIGGGSIRIHRRDIQNRVFNVMGIGEEEAQTQFGFLLDAFKYGAPPHGGVAFGWDR IVSLLTKSDSIRDVIAFPKSGGGFDPLTEAPAPITPAQRKEAGVDAKPKKRGEEASEESD K >gi|292820081|gb|ACYT02000073.1| GENE 88 96086 - 96703 720 205 aa, chain + ## HITS:1 COG:VC1178 KEGG:ns NR:ns ## COG: VC1178 COG0009 # Protein_GI_number: 15641191 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Vibrio cholerae # 3 204 4 205 206 211 49.0 8e-55 MSYVEMHPENPQARLVNTVVDLLERGGTIALPTDSGYAIATKAGNKAGMDTIRAIRKLDD KHNFSLLCHSFAQLGELVIIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKHTVGV RIPDHVITQAIVEALGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVGPVGVAEP TTVIDFAGGDAVVARVGAGDISLFD >gi|292820081|gb|ACYT02000073.1| GENE 89 96708 - 97889 334 393 aa, chain + ## HITS:1 COG:STM2775 KEGG:ns NR:ns ## COG: STM2775 COG2382 # Protein_GI_number: 16766087 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Salmonella typhimurium LT2 # 30 386 41 409 414 71 28.0 3e-12 MAFEQTAFSRTGFCRLRWEASDGVYRYADGLPIVGPRLVVDGVDAVRVTFQWGAQAAADC YVILNTITDRAREHLDDFCMSIGPGRSDARALVCALPADAILSYQKVIVGPSGLDPSVGT DMGEWIRFLEDARPDSSNPLRVVNGRGAAASLFVGPDARVVWPSQDLSAPEMRPAREHEI GARIDARLGQTRQRRIVMYDGEADPTCTLILFDGEIWRGNGVGWLPRRYPGLRVVTIDAG DLDEREAELTDADRVGALLQAVCDETGVGPVMVAGQSYGGLAVLEAALRSDLSLDCAVAQ SPSLWWGGEQRGVGEGTLMGDLRTGSVRPRRDVHLRLQVGTLEQTMRPVVDDCAQLLQGL GAAVEVDHYRSGHDVAWWREGLVRALDEWWARP >gi|292820081|gb|ACYT02000073.1| GENE 90 97980 - 99017 1373 345 aa, chain + ## HITS:1 COG:slr1319 KEGG:ns NR:ns ## COG: slr1319 COG0614 # Protein_GI_number: 16329185 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Synechocystis # 18 338 12 314 315 122 30.0 9e-28 MHLSTRIRAIVGVALTALALGACSSNQPAPASSPEASATSETSATRTVTDASGQEVTLPS HPSRVVTLSEPTTDNALALGVTPIGVVSGRGQQTVPNYLVERAGDIPILGSIGTPNLEAI GAAHPDLILVDGTSVKNNDTETLTALAQIAPVFFTTQKGGDWRETFTLTADALGVADQAE AKLAEFDQHVASVSARLKDAGYLDQTYSVVRWQGDSAGLILKELPAGQALTALGMKRPAN QDRDGEGHSEPVSLENIDQIDADWIFFGTLGKASVNNPSAGGNTGVEASAAALEEAKATV GFDSLGAVKANHVIPVDGSLWTSTGGYLLMDGIVSSIEAQFVPAS >gi|292820081|gb|ACYT02000073.1| GENE 91 99053 - 100048 725 331 aa, chain + ## HITS:1 COG:all2586 KEGG:ns NR:ns ## COG: all2586 COG0609 # Protein_GI_number: 17230078 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Nostoc sp. PCC 7120 # 27 328 37 340 343 167 37.0 2e-41 MTTRRITSVAIACAVATLVLAAVTLASLALGSRQIAPDVVWDALVNGGSSQDAQVVTQLR VPRTLAALVIGGALGLAGSIMQAMTRNPLADPGVLGINAGAAFLVVTVTAASGVATRTST LGASLIGAVVAAGLVFAMSGSGGGSRSRLALAGIAVSAALASLTQAVLAANQFAFNEFRY WASGSLEGVDMGSVAAAGAVIACGGVVAALISSALGVLAIGEDTAVSLGVRVRLIRSLGV VAVTALAGGATALGGPLTFVGLAVPLLVRRVVGARQGAIALWSLIVGAAWVCAADVVSRL VLAPSEVPVGVIVALIGAPFFIIGSRGKGMS >gi|292820081|gb|ACYT02000073.1| GENE 92 100045 - 101094 605 349 aa, chain + ## HITS:1 COG:AGpA451 KEGG:ns NR:ns ## COG: AGpA451 COG4779 # Protein_GI_number: 16119542 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterobactin transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 348 39 367 368 188 40.0 2e-47 MRPAPSRYTIVSLRRVSVRVHRRSAAVVLIGFALLCALAVYSLTLGDYGLSAADSFRRLL GDGGPRDDFLGVYFVQSVRLPRMLAAVAVGAALGIAGRIFQTISGNPLGSPDIVGLSTGC ATGALIAIIIMGSSPAVTGIGALLGGLASGAFILACAGGMRVTGIRVVLVGIGCSAALRA VNSLLIVKAPLEAAQRAQLWSAGSFSGVTIARLTPLLIVIAGVVAVCAICAVPLGLVAMG DDIATGLGVRVRQTRMLLIVVAILLVASATAVAGPVAFVALAAPHVAHRLCAAGGVGFAS SAIVGALLVLVSDVCAQRLVAPAELPVGVVTGVVGGLYLLWLLIREVRS >gi|292820081|gb|ACYT02000073.1| GENE 93 101091 - 101885 291 264 aa, chain + ## HITS:1 COG:fepC KEGG:ns NR:ns ## COG: fepC COG1120 # Protein_GI_number: 16128571 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Escherichia coli K12 # 1 262 1 260 271 274 52.0 1e-73 MTEIVTRQGLSARDIVVGYGKNDPILEGLSLDVLAGELTVIVGPNACGKSTLLRSLARVL DVRSGVVELDGRSVANINQKALARRLGLLAQSSVAPGDMLVEDLVARGRYPYQSLLRQWS REDDEAVARAMEDAGVAPLAGRRVGELSGGQRQRVWIAMALAQSTEILLLDEPTTYLDLN HQLEVLRLAERLQRAGTTVVAVLHDLHLAFRYATHLVFMKNGEIVAQGAPHDVVTADLVE RVFSVPCRIIDDPETGSPLVIPTR >gi|292820081|gb|ACYT02000073.1| GENE 94 102074 - 102205 62 43 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192674|ref|ZP_06609628.1| ## NR: gi|293192674|ref|ZP_06609628.1| putative iron ABC transport system, solute binding protein [Actinomyces odontolyticus F0309] # 1 43 1 43 43 73 100.0 4e-12 MVFIASGYSDTDILILGVVKPISARHPVEMEKDTDDNADAIAR >gi|292820081|gb|ACYT02000073.1| GENE 95 102177 - 103325 548 382 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192675|ref|ZP_06609629.1| ## NR: gi|293192675|ref|ZP_06609629.1| putative protein TPRXL [Actinomyces odontolyticus F0309] # 73 382 1 310 310 368 99.0 1e-100 MTTQMRSHGRGLRMPLLALTASASIVGGVFVAAQPAYSVDGVVGVGGQCLTAVDEGASIV VSSVVPVGSPLHVEGAGWGPSTEASRGFVIVTLDDGQEVRPDGVALPAWVPTSVQRNKAA WSVAEVSTTGEFSADIELPSTWTVGSEHSIMIGDGVTGTYVQVSVMVVEAGEQAHACSLT PTDDASVEPTDEPSNQPADEPSTEPDGHATSDVATDGPTESPADNAADNAAKPDFDLTDD ASHDAASDAAVSAPSTVAASPSPRETPSADASDTLRSSVTPTPSASASSAFSSGGNGSSS SGSGGAGSNADAPSPSPSTEQESVSASQIGPKAHSEQQAMNQAVREQESRLNGWILAGGG LLALLGAIVTVSIVRRSHGLLR >gi|292820081|gb|ACYT02000073.1| GENE 96 103468 - 104823 1208 451 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192676|ref|ZP_06609630.1| ## NR: gi|293192676|ref|ZP_06609630.1| Rhs element Vgr protein [Actinomyces odontolyticus F0309] # 22 451 1 430 430 679 100.0 0 MQHGRASSAIAARSFVGRSRIMSLLMALFLFAGIGLAIPGFAARADDAVPHYALRAGDDI QVNIANNADFAAEFAETGYWGLILDHGGVTPLTRPTFKRDGETVTPSAPDLWAAQSLKDS YIHAPVPDGTNNVEGVKWLPGETHTITVVFYRSDSSGVEPNPIYGTVSIYTPYTDNIDDP TPAPTVDPAASPARTDEPTAEPAPTTDPEPAPTSEPSADPAPAPAPDPVVEPTTEPSVAP APLPDDPQLPAVRPSPTPSESASPTPTPSASATASQPSETPVSPISDVSQLNDSNKGGVS AAFTAGLLTINVPSDKAAAGDWVSANIMQTGEARWLQVEDSNKVTMDLTGLPTGEYKVVV ANRSHELVGWAEFKVASAVGAAANGSSVDASGAVKLHAEMLSSSLAGDESEGLNGYLLGA GACMLILGGLVVVQVLSGPKIGSSSSGVTLS >gi|292820081|gb|ACYT02000073.1| GENE 97 104834 - 106177 882 447 aa, chain + ## HITS:1 COG:ML0510 KEGG:ns NR:ns ## COG: ML0510 COG2256 # Protein_GI_number: 15827173 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Mycobacterium leprae # 18 447 48 471 473 428 57.0 1e-119 MDLFDSESVDESGVPAFNAGAPLAVRMRPTTLDEVVGQSHLLGEGAPLRRLLSPGSSDGV AVSSVVLWGPPGTGKTTLAYLIARASGRRFVELSAVSSGVSDVRRVVDDARRTLASGGQE TILFVDEVHRFSKSQQDSLLPAVENRWVVLVAATTENPSFSVISPLLSRSLLLTLRPLDS DAIEGLIRRALADERGLARRFSITDEAVAGLVRLAGSDARKSLTLLEAAAGVASDDGSGE ITVASVEAAANQALVRWSKDQHYDVASAFIKSMRGSDVDASLHYLARMIEAGEDPRFIAR RIMIAASEEIGMAAPEVLTTCVSVAQGVTLIGMPEARLLLAQAVVAVATAPKSNATYLAI DRAIADVRAGRGGAVPEHLRDAHYAGAKTLGHGDGYLYAHDQPHHVAAQQYLPDDLEGTR YYEPTENGHEAMLTKRLGVIRNLLKRR >gi|292820081|gb|ACYT02000073.1| GENE 98 106297 - 106920 877 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227496183|ref|ZP_03926489.1| ribosomal protein S4 [Actinomyces urogenitalis DSM 15434] # 1 207 1 207 207 342 83 5e-93 MATNRSRKQVRESRALGLALTPKAVRYFEKRPYGPGEHGRTRRRQDSDYAVRLKEKQRLR AQYGIRESQLRRAFEEARRTAGLTGENLVELLEMRLDSLVLRAGFARTIQQARQFVVHRH ILVDGKIVDRPSFRVKPGQTLQVKPKSQTTVPFEIAAEGIHRDVLPAVPEYLDVELSRLK ATLVRRPKRAEVPVTVDVQMVVEHYSR >gi|292820081|gb|ACYT02000073.1| GENE 99 107042 - 109750 3262 902 aa, chain + ## HITS:1 COG:Cgl1594 KEGG:ns NR:ns ## COG: Cgl1594 COG0013 # Protein_GI_number: 19552844 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 902 1 888 888 748 47.0 0 MRTSEIRTRWLDYFEKQGHEIRPSVSLVSPEPSILFTIAGMVPFIPYITGVEPAPWPRAA SVQKCIRTNDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEGKYGLD GDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWHYDRGP EYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAGLERLA FVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADHVRSSL MLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYPELEIN WKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYGFPIDL TLEMAAEQGVSVDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGGGSTFLG YTEQAAEATVEALLVDGVAAPAASAPAEVEVILDRTPFYAEMGGQLADHGTIRLAGGGVV EVHDVQAPIRGLSVHRGTLTEGGMTVGEKAYAEIDGERRLAIARAHTATHMVYAGLRNVV SEDLTQAGSENSPSRLRFDFRHGSALEGSQLSDIEALVNEKLAEDLAVTTEVMSIDAARE AGAIALFGEKYGSEVRVVTIGDGFDRELCGGTHVPTTGHIGRITVLSEGSVGSGVRRIDA LVGDGAYEFQAKEHALVNQLSQLVGGRADELPERIESLLAKLRESEKELEKVRTAQALSQ GADLAASAKAIGPVTVVASAVGEMPSADALRTLALDVRDRLGNDRGTVVALGGVVGGKPS LVVATNEAAREASVKAGALVRAVGKHMGGGGGGRDDIAQGGGTKPEGLADAIDAIRKEIE AL >gi|292820081|gb|ACYT02000073.1| GENE 100 109747 - 110235 211 162 aa, chain + ## HITS:1 COG:Cgl1593 KEGG:ns NR:ns ## COG: Cgl1593 COG0816 # Protein_GI_number: 19552843 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Corynebacterium glutamicum # 6 139 16 158 182 103 46.0 2e-22 MSIRRGIRIGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEV IVGLPRHLRGGEGISAKGARKYARRIKKLVPDVRVAMVDERMTSNQAHARLRASGIPEIE HRSVIDQVAAQIILEQALELERMGGRAPGEEIILEPSEGAHA >gi|292820081|gb|ACYT02000073.1| GENE 101 110232 - 111668 1408 478 aa, chain + ## HITS:1 COG:MT2630 KEGG:ns NR:ns ## COG: MT2630 COG1559 # Protein_GI_number: 15842091 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Mycobacterium tuberculosis CDC1551 # 109 465 22 408 417 135 29.0 2e-31 MSTPPPYPFRSRREIHSGERKVYSDAELHEQHASQDATAMPAQGTDLRGGSSRDEAVAPV AATARGERTLPSFDEVTDTGAMPRVSGAALRQRSAALRAESPSETTGMRSRRLASERRAA RKRKRRRRVRSFFIIVLVLGLLAGASYVAYDQLFNSSTTASDDFPGPGTGSVEVTIAENS SGRDIGQTLVDAGVVKSVGAFVRQFEKTPASMSIRPGTYRLKQQMSAAGALAGLLDETNR VDSTITITSGQKMSEVKKRIVDIMGVTEEQVDAAFADTEAIGLPSEAGGNAEGWLLPGSY EVSEDDTPTTVIARMVKGTVDELDRLGVAPADRQTVLIKASIVDGEMNIDKYMPMVARVI ENRLADTNGETKGYLGMDSTVLYGVGKTSGVPDQADLDNDNPYNTRLHAGLPPTPIGQPN EKAIKAVLNPAEGNWLYFVTVNLDTGETLFASTLEEQEKNREQFKAYCAANPKVCTAS >gi|292820081|gb|ACYT02000073.1| GENE 102 111665 - 112534 561 289 aa, chain + ## HITS:1 COG:ML0515 KEGG:ns NR:ns ## COG: ML0515 COG0169 # Protein_GI_number: 15827177 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Mycobacterium leprae # 4 272 14 274 278 124 37.0 2e-28 MMWAGVIGSPIEHSLSPVIHRAAWEDLGIVGWEYRRIEHDGASLPEFISGLDESFRGLSV TMPCKQAIIPLLDAIDPLAIGVGAVNTVVPSFGVLAGFNTDVTGIASAIRRACSQADRAL PTSAVVLGARATASSALAALGELGIVTSTVAARRFGGPGSVVAASSRLGVSIEQVLWSDR GAVLRAVSGADLVISTLPAGVADSLAEEMTVREGQVLLDVVYSPRETALRSAFERNGGIV AEGTDMLIFQAAAQVQLMTGRSPKTDVMRGALEAELARRARASGGGAAS >gi|292820081|gb|ACYT02000073.1| GENE 103 112531 - 113223 689 230 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192683|ref|ZP_06609637.1| ## NR: gi|293192683|ref|ZP_06609637.1| peptidase, A24 family [Actinomyces odontolyticus F0309] # 1 230 1 230 230 338 100.0 1e-91 MIVTWLPSWLSTDLSLISGFLTWIVVLSWLWRSGWKIQRRYFIEATQKPLTRNAIVWSAG IVGAIFFVAAQMRPGMPGVMTVAMIGALSAYVDARTHRLPNAYTVAMGIGVVLGVIVGGV ISPLWQERLLGALIGALIWFVPIALLNRLPGGMGGGDVKLAPVLGALVGSVGLHAAFFAL ALSFVSAGVAALWKIVVGSAGTKTRVPMGPWMIGAALVGTIAWGVVPDWL >gi|292820081|gb|ACYT02000073.1| GENE 104 113291 - 114856 1354 521 aa, chain + ## HITS:1 COG:ML1269 KEGG:ns NR:ns ## COG: ML1269 COG0147 # Protein_GI_number: 15827651 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Mycobacterium leprae # 24 520 11 506 529 409 47.0 1e-114 MSISTPSYQSESVSLEWGQTWPPRDVFVDLAAKRRVIPVVRRVLADELSAVGVYRQLAHG NYGSFILESAEHGGSWGRWSFVGASSAGAIVARDGRAQWIGSHPEGALEEGTFLEVVHSA LEELAAPAIEGLPPLTGALVGSLGWGIIPEWEPTLAATAPKESDIPDATLVLATEVAALD HATGSVYLMAIAWNLNGSADGVDGAYDRAIERLDAMTTQLAAPIAPAVFGASGATPPEVR ERTARADFESSVSAAKRAIKDGDAFQIVVSQRLDVSTSASGIDVYRVLRTVNPSPYMYFL DLPDERGGHFVIVGSSPETLVKTERRRVWTYPIAGSRPRGADSAEDHRLAAELLEDPKEL SEHVMLVDLARNDLSKVCDPASVEVSTLMELKRFSHIQHISSTVTGVLRADADALDALVA TFPAGTLSGAPKPRAIQLIDDFEPAARGVYGGVVGYFDLSGDADLAIAIRTASLKDGVAS VQAGAGLVADSVPALEYVESRNKAAAAVESVVRASTLIPLS >gi|292820081|gb|ACYT02000073.1| GENE 105 114945 - 115793 791 282 aa, chain + ## HITS:1 COG:MT1646 KEGG:ns NR:ns ## COG: MT1646 COG0134 # Protein_GI_number: 15841064 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 2 265 15 276 282 264 59.0 1e-70 MSVLDDIIAGVRQDLKEREDRVPLARIKEMETQVPEAKDALGALRNRDGAVKIISEVKRS SPSKGALAAIPDPAALASTYEAGGASVISVLTEQRRFNGSLADLDAVRAAVDIPILRKDF IVTPYQIHEARTHGADLVLLIVAALEQNVLVSLLERTRSLGMEALVETHSRLEALRAMEA GASIIGVNARNLKTLEVDRSTVEQVIDVIPQDVVAVAESGVANAHDVFEYAKWGADAVLV GEALVTSGDPRASIQDMVSAGQHPALRTDRKARVAAARQEGQ >gi|292820081|gb|ACYT02000073.1| GENE 106 115793 - 117088 1470 431 aa, chain + ## HITS:1 COG:MT1647 KEGG:ns NR:ns ## COG: MT1647 COG0133 # Protein_GI_number: 15841065 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Mycobacterium tuberculosis CDC1551 # 9 404 28 417 422 479 63.0 1e-135 MVAENFAQGPYFGDFGGRFVAESLMGPLEEVEAAWKHLWRDKSFQRRLRDLFLNYAGRPS LLTEAPCFAADLGGVRVFLKREDLNHTGSHKINNVLGQALLTKELGKTRVIAETGAGQHG VATATAAALLGLDCTIYMGREDTERQALNVARMQMLGAEVIAVTAGSATLKDAINEAFRD WVTNVETTNYIFGTAAGPHPFPELVRDLQRVIGDEARAQLLAAEGRLPDVVVACVGGGSN AIGSFTAFIDDPSVELLGCEAAGDGFDTGRHAASITADEVGVLHGARTFVLQERDGQTKA SHSISAGLDYPGVGPQHAWLARSGRASYMPVSDADAMDAFLRLSRTEGIIPAIESSHALA GVRAWARAKSEAEGPFAPGEEPIVIVTVSGRGDKDVDTASRWFGYGQAKLQVIDPSAGPS GVAVLDENEEK >gi|292820081|gb|ACYT02000073.1| GENE 107 117090 - 117899 355 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1 241 1 240 263 141 37 2e-32 MTRAPHSAIAIDAALQRGDAALIAYLPVGFPSVEDSIRAGKVLADCGVDVIELGFPYSDP GMDGPTIQRATVAALERGTHLEDLFHAVDELTSYGISTCSMTYWNPVEWWGVERFAKDFA AVGGSGLITPDLPPEEGAQWEAASDKYDLERIYLSAPSSPEHRLKLIAEHSRGWVYAASS MGVTGARAAVGAHVADVVEGTRAAGAERVCVGLGVSNGTQAREIGAYADGVIVGSALVKT LFDENIDRGLKALGELATELKFGVTGVRA >gi|292820081|gb|ACYT02000073.1| GENE 108 117896 - 118849 827 317 aa, chain + ## HITS:1 COG:Cgl2037 KEGG:ns NR:ns ## COG: Cgl2037 COG0682 # Protein_GI_number: 19553287 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Corynebacterium glutamicum # 7 270 4 276 316 259 49.0 4e-69 MSALIAAGIPSPSQGVWYLGPIPLRAYGIIIAAGMIIGVWWTARRYRDRGGNPDTLYDAA LWAIPLGVVGARIYHVITSPDAYFGPGGDPMLAFQIWRGGLGIWGGVAFGALGVYIAVKR AGVRLGPIADSLAPALLIAQAIGRWGNWFNQELFGAPTTMPWGLQIDTAHMPAGYPAGTL FHPTFLYECLWNLAAAALIVWLDRRHRFAGGQVFGLYLMAYTAGRCWIEMLRIDDAHRVL GLRLNVWTSLLVFALGVLVFVVAGRLGRPTRVVAETTAEHADEEAQDLQTDAGESDADDV SGTSVSEDETAEESTLE >gi|292820081|gb|ACYT02000073.1| GENE 109 118981 - 120426 1600 481 aa, chain + ## HITS:1 COG:Cgl2036 KEGG:ns NR:ns ## COG: Cgl2036 COG0469 # Protein_GI_number: 19553286 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Corynebacterium glutamicum # 2 474 5 475 477 459 53.0 1e-129 MRRAKIVCTIGPATETPEQLQALVDAGMDVARINRSHGKAEEHTAVISRVRKASATSGRA IAVLVDLQGPKIRLETFQDGPQELKIGDTFTITTRDVPGTKELVGTTFKGLPGDCAPGDR LLIDDGNVAVRVVEVTETDVVTRVEVPGMVSDHKGLNLPGVAVSVPALSEKDKEDLRWAI EQDADFIALSFVRSAKDINDVHVIMDEMGKRIPVIAKIEKPQAVEALEDIIEAFDGIMVA RGDLGVEMPLEAVPLVQKRAIELARIAAKPVIVATQVMDSMIKNPRPTRAEASDCANAIL DGADAVMLSGETSVGAFPIETVRTMAAIIESTEENGGERIASIPGFYADRAGVICEAAAR IAEHMDARYLVTFSQSGTSARLLSRMRRPIPMLAFTPLESTRRRLALSWGIRAYRVPEVQ HTDDMVWQLDQVVQSAHLADIGDQLVIVAGMPPGIAGSSNMLRIHEVGDEADYAIGGTRH S >gi|292820081|gb|ACYT02000073.1| GENE 110 120661 - 120876 347 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508855|ref|ZP_02044497.1| ## NR: gi|154508855|ref|ZP_02044497.1| hypothetical protein ACTODO_01366 [Actinomyces odontolyticus ATCC 17982] # 1 71 1 71 71 136 100.0 4e-31 MNTKIRTVSVHDTLFGRVANNLEVGQLSRAVEPWFADFHDSKVKQAIADLDEPARRGAAA EYLGLELSVVA >gi|292820081|gb|ACYT02000073.1| GENE 111 121150 - 121740 696 196 aa, chain + ## HITS:1 COG:Rv1626 KEGG:ns NR:ns ## COG: Rv1626 COG3707 # Protein_GI_number: 15608764 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Mycobacterium tuberculosis H37Rv # 4 191 9 196 205 202 61.0 3e-52 MSEEQAEPRRVLVAEDEGLIRLDIVETLTQAGFEVVGEAADGEEAVELALELEPDLCVMD VKMPKMDGITAAEKILQELSCAVVMLTAFSQTELVERARDAGAMAYVVKPFSPADLIPAV EIALSRHAEIESLEDQIADLSDRFETRKRVDRAKGLLMKNMGMSEPEAFRWIQKTSMDRR LSMREVADAVINQVDD >gi|292820081|gb|ACYT02000073.1| GENE 112 121801 - 122277 375 158 aa, chain - ## HITS:1 COG:BS_yuxO KEGG:ns NR:ns ## COG: BS_yuxO COG2050 # Protein_GI_number: 16080218 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Bacillus subtilis # 31 146 6 118 126 86 45.0 2e-17 MTHEHQTKHTHSSSPDPLARGGWVGAHWPGTLMEATGMEVLEHSASRTVISMPIDGNRQS AGILHGGASAALAETAASFAAQIHAREANPGKQAYAVGTELNASHISAGREGIITATATA VHLGRSSTVHTVEIRDEADRLISIARVANRILVRSSHD >gi|292820081|gb|ACYT02000073.1| GENE 113 122117 - 125002 2739 961 aa, chain + ## HITS:1 COG:MT1665_2 KEGG:ns NR:ns ## COG: MT1665_2 COG0749 # Protein_GI_number: 15841084 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Mycobacterium tuberculosis CDC1551 # 446 961 84 592 592 512 56.0 1e-144 MGMEITVRDALCSSTSMPVASMRVPGQWAPTQPPRASGSGEEECVCFVWCSCVMASRVAC VSDTVLIIDGHSMAFRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQPTHVAVAF DVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLA YRAGNDGATVLVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPE IAAIVGETSDNLPGVPGVGPKTAAQWINKYDGLDNLLARADEIGGKRGAALREHMDDVVR NRRLNRLLTDMDLEVSPSDLARRPTDVAAIDRLFDSLEFGRLRQKVREVAGIGMGEGHVD EAPEAVTEVEISVALADASCDIAQWARAHSTLAVLVEGDMRPTRGDVTRLVLASDKEALV IDPVELSPKQEEALGEVLATASSLIVHDAKGARHALSSRGWTLGGVEFDTMLAAYLAHPD QRSHKLEDVLSRVLGVVIEEGEGDSEALFDLGDMGAGPSAAQVRAGKLAAYLHPLASTLR SRLEESSEAALLTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDELGKAVDAAREGAWAAA GREVNLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADALADLHAKTSDEGGAGHDFLGFL LTHRDRIKLKQMVDSLSATVASDGRIHTTFSQVAAATGRLASSDPNLQNIPARSADGMRI RGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAE VSAEERSRIKATSYGLAYGLSSYGLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQ ARADGYTQTMFGRRRYLPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMINVVDALS EAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRMATPVELSVPLDVAVGVGRSWQLAA H >gi|292820081|gb|ACYT02000073.1| GENE 114 125174 - 126610 2182 478 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436] # 1 478 1 481 481 845 88 0.0 MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVI LSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEED GVVTGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNV VLSRRAWLEQTQSEVRTNFLHTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWK HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFARTHAIGQVVPGKVTK LVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLK QANEGVDPTSEEFDPSLYGMAAEYDENGNYKYPEGFDPETQEWMEGFDAQREAWEAQYAE AQARWEAHKAQVRKALEEDAEAAPSIEEQASYSTPVDNEGTLASDEALAALREKLTNN Prediction of potential genes in microbial genomes Time: Tue May 17 07:14:10 2011 Seq name: gi|292820000|gb|ACYT02000074.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.8, whole genome shotgun sequence Length of sequence - 90033 bp Number of predicted genes - 81, with homology - 78 Number of transcription units - 29, operones - 20 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 254 - 302 7.6 1 1 Tu 1 . - CDS 315 - 1667 1350 ## COG1114 Branched-chain amino acid permeases - Prom 1700 - 1759 1.5 2 2 Op 1 . + CDS 1711 - 2451 398 ## COG0237 Dephospho-CoA kinase 3 2 Op 2 . + CDS 2548 - 4617 2653 ## COG0556 Helicase subunit of the DNA excision repair complex 4 3 Op 1 1/0.000 + CDS 4895 - 5875 1217 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 5 3 Op 2 . + CDS 5934 - 6932 1211 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 6 3 Op 3 . + CDS 6922 - 9312 2569 ## COG0474 Cation transport ATPase + Term 9330 - 9379 15.1 7 4 Tu 1 . - CDS 9382 - 9684 416 ## COG2350 Uncharacterized protein conserved in bacteria + Prom 9606 - 9665 2.6 8 5 Op 1 . + CDS 9721 - 12585 3994 ## COG0178 Excinuclease ATPase subunit 9 5 Op 2 . + CDS 12609 - 13094 584 ## gi|293192763|ref|ZP_06609658.1| polysaccharide exporter, PST family, MOP superfamily + Term 13113 - 13162 11.1 - Term 13101 - 13148 9.1 10 6 Op 1 . - CDS 13186 - 15102 2543 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 11 6 Op 2 . - CDS 15149 - 17014 2592 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 12 7 Tu 1 . - CDS 17130 - 18554 2231 ## COG0174 Glutamine synthetase + Prom 18612 - 18671 1.6 13 8 Op 1 . + CDS 18741 - 20756 1735 ## COG0322 Nuclease subunit of the excinuclease complex 14 8 Op 2 . + CDS 20753 - 21976 1280 ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 15 8 Op 3 12/0.000 + CDS 22019 - 23014 1099 ## COG1660 Predicted P-loop-containing kinase 16 8 Op 4 12/0.000 + CDS 23014 - 24018 962 ## COG0391 Uncharacterized conserved protein 17 8 Op 5 . + CDS 24081 - 25046 1031 ## COG1481 Uncharacterized protein conserved in bacteria 18 9 Tu 1 . - CDS 25088 - 25249 145 ## + Prom 25095 - 25154 2.2 19 10 Op 1 26/0.000 + CDS 25251 - 26258 1687 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 20 10 Op 2 13/0.000 + CDS 26366 - 27556 1849 ## COG0126 3-phosphoglycerate kinase 21 10 Op 3 9/0.000 + CDS 27560 - 28336 1294 ## COG0149 Triosephosphate isomerase + Term 28391 - 28442 15.2 22 10 Op 4 . + CDS 28454 - 28744 508 ## COG1314 Preprotein translocase subunit SecG + Term 28760 - 28807 13.2 23 11 Op 1 4/0.000 - CDS 28863 - 29606 686 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 24 11 Op 2 5/0.000 - CDS 29609 - 30550 889 ## COG3429 Glucose-6-P dehydrogenase subunit 25 11 Op 3 . - CDS 30547 - 32073 1948 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Term 32167 - 32216 19.1 26 12 Tu 1 . - CDS 32241 - 34424 3108 ## COG0021 Transketolase 27 13 Op 1 1/0.000 + CDS 34402 - 35400 384 ## COG4974 Site-specific recombinase XerD 28 13 Op 2 3/0.000 + CDS 35418 - 36281 959 ## COG1192 ATPases involved in chromosome partitioning 29 13 Op 3 21/0.000 + CDS 36265 - 37143 360 ## COG1354 Uncharacterized conserved protein 30 13 Op 4 12/0.000 + CDS 37136 - 37696 484 ## COG1386 Predicted transcriptional regulator containing the HTH domain 31 13 Op 5 . + CDS 37693 - 38442 1108 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 32 13 Op 6 1/0.000 + CDS 38439 - 39638 651 ## COG0287 Prephenate dehydrogenase 33 13 Op 7 . + CDS 39665 - 40399 694 ## COG0283 Cytidylate kinase 34 14 Tu 1 . - CDS 40464 - 41024 500 ## gi|293192787|ref|ZP_06609682.1| dehydrin Rab18 - Prom 41267 - 41326 80.3 + TRNA 41245 - 41321 78.3 # Pro GGG 0 0 35 15 Op 1 . - CDS 41797 - 42309 588 ## Arch_0990 membrane-flanked domain protein 36 15 Op 2 . - CDS 42370 - 43005 221 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 37 16 Op 1 . - CDS 43164 - 44717 1798 ## COG1160 Predicted GTPases 38 16 Op 2 . - CDS 44797 - 46377 1633 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 39 17 Op 1 . + CDS 46449 - 49028 2285 ## COG0308 Aminopeptidase N 40 17 Op 2 5/0.000 + CDS 49115 - 49885 443 ## COG3879 Uncharacterized protein conserved in bacteria 41 17 Op 3 5/0.000 + CDS 49882 - 50214 453 ## COG3856 Uncharacterized conserved protein (small basic protein) 42 17 Op 4 . + CDS 50216 - 51016 649 ## COG3879 Uncharacterized protein conserved in bacteria + Term 51044 - 51086 0.4 + Prom 51032 - 51091 3.4 43 18 Op 1 4/0.000 + CDS 51120 - 51554 496 ## COG1716 FOG: FHA domain 44 18 Op 2 . + CDS 51556 - 52323 357 ## COG0789 Predicted transcriptional regulators 45 18 Op 3 . + CDS 52329 - 52439 109 ## 46 18 Op 4 . + CDS 52472 - 52987 578 ## COG0789 Predicted transcriptional regulators - Term 53036 - 53061 -0.5 47 19 Op 1 . - CDS 53070 - 54584 1559 ## COG0443 Molecular chaperone 48 19 Op 2 . - CDS 54618 - 55361 777 ## Caci_1712 hypothetical protein 49 20 Tu 1 . + CDS 55525 - 55890 602 ## Sked_18450 hypothetical protein + Term 55912 - 55951 11.2 50 21 Op 1 2/0.000 - CDS 55887 - 56672 619 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 51 21 Op 2 . - CDS 56692 - 58293 1115 ## COG0815 Apolipoprotein N-acyltransferase 52 21 Op 3 . - CDS 58328 - 61096 2437 ## COG4581 Superfamily II RNA helicase 53 21 Op 4 . - CDS 61093 - 62031 612 ## Bcav_2058 hypothetical protein 54 21 Op 5 . - CDS 62024 - 62956 558 ## COG2378 Predicted transcriptional regulator - Term 62965 - 63002 -0.6 55 21 Op 6 21/0.000 - CDS 63006 - 64049 878 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 56 21 Op 7 . - CDS 64061 - 64834 604 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component - Term 65067 - 65114 12.3 57 22 Op 1 3/0.000 - CDS 65128 - 65790 772 ## COG0036 Pentose-5-phosphate-3-epimerase 58 22 Op 2 20/0.000 - CDS 65801 - 67273 1143 ## COG0144 tRNA and rRNA cytosine-C5-methylases 59 22 Op 3 4/0.000 - CDS 67270 - 68214 404 ## COG0223 Methionyl-tRNA formyltransferase 60 22 Op 4 . - CDS 68249 - 70135 337 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 61 23 Op 1 . - CDS 70274 - 70909 653 ## COG4243 Predicted membrane protein 62 23 Op 2 4/0.000 - CDS 70906 - 72093 1446 ## COG0192 S-adenosylmethionine synthetase 63 23 Op 3 10/0.000 - CDS 72090 - 73319 698 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 64 23 Op 4 25/0.000 - CDS 73321 - 73587 444 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 65 23 Op 5 . - CDS 73624 - 74181 523 ## COG0194 Guanylate kinase 66 23 Op 6 . - CDS 74209 - 74520 207 ## Jden_1319 hypothetical protein 67 24 Op 1 3/0.000 - CDS 74622 - 75488 342 ## COG0284 Orotidine-5'-phosphate decarboxylase 68 24 Op 2 24/0.000 - CDS 75485 - 78784 4085 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 69 24 Op 3 7/0.000 - CDS 78784 - 79971 1445 ## COG0505 Carbamoylphosphate synthase small subunit 70 24 Op 4 15/0.000 - CDS 79968 - 81287 1644 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 71 24 Op 5 8/0.000 - CDS 81280 - 82266 1044 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 72 24 Op 6 . - CDS 82270 - 82833 401 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 73 25 Tu 1 . + CDS 82965 - 84002 289 ## COG1609 Transcriptional regulators - Term 84005 - 84042 3.8 74 26 Op 1 . - CDS 84052 - 84828 460 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 75 26 Op 2 . - CDS 84831 - 86162 1526 ## COG2271 Sugar phosphate permease - Prom 86309 - 86368 3.8 76 27 Op 1 . + CDS 86128 - 86361 143 ## gi|293192829|ref|ZP_06609724.1| conserved hypothetical protein 77 27 Op 2 . + CDS 86358 - 86558 136 ## 78 27 Op 3 . + CDS 86651 - 86947 436 ## COG4309 Uncharacterized conserved protein 79 28 Op 1 . - CDS 87076 - 88404 813 ## gi|154508772|ref|ZP_02044414.1| hypothetical protein ACTODO_01281 80 28 Op 2 . - CDS 88420 - 88920 283 ## COG3863 Uncharacterized distant relative of cell wall-associated hydrolases 81 29 Tu 1 . - CDS 89614 - 89718 66 ## gi|154508770|ref|ZP_02044412.1| hypothetical protein ACTODO_01279 Predicted protein(s) >gi|292820000|gb|ACYT02000074.1| GENE 1 315 - 1667 1350 450 aa, chain - ## HITS:1 COG:Cgl2257 KEGG:ns NR:ns ## COG: Cgl2257 COG1114 # Protein_GI_number: 19553507 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Corynebacterium glutamicum # 14 441 2 409 426 319 50.0 8e-87 MTQTVNDDSAGRSSSTAVLIATSLTLFSMFFGAGNLIFPPIMGASAGSNFAPAMIGFLIG GVALPVISIITIALSGTDMRDLVSRAGKSFGIVFSIMVYLSIGAFYALPRTGAVSFSTAV APLIGTKSLTASIIFSFVFFGIAFYLCWNPGTIIDNLGKILTPILLGLLVLLVFLCLASL PASHDAPTGEYAATPLAAGLLEGYMTMDSIAALSFGIIVVTSLGHTGGGIGAKVVRRTST AAIIAGSLLAVVYVGLGLIGHVIPNAQSYSDGASLLADAAQMTMGWPGQIVFGLIVLTAC MTTAVGLIAATSEFFHRLVPAISYRAWMIVFTIISFVLASAGLSSVLAIAVPIITFLYPI AITIVFLTIATHPLRLATPALWAFRLGTWMAAAWSAATTLAHVGVKPDMINSFLMWSPLQ ANQLGWILPTVIAAVIGASIDVAVMKRSAT >gi|292820000|gb|ACYT02000074.1| GENE 2 1711 - 2451 398 246 aa, chain + ## HITS:1 COG:MT1667_1 KEGG:ns NR:ns ## COG: MT1667_1 COG0237 # Protein_GI_number: 15841086 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Mycobacterium tuberculosis CDC1551 # 46 242 4 198 208 146 44.0 3e-35 MHDDHIKQQLAGYPVGVNTTLSCGACTATLIRPMGAPHPQGPRRIVAVSGGIGSGKSSVT RVFASLGAVTADADTIAREILEPGEPALSEVARAFGGDLLRQDGSLDRALLASRVFGGEG ADERVARLNAITHPLIEARAWSILRGAPEGSLAVYDIPLLIEGDHVDRFDAVVIVDAPIE ERVKRLEGRGFAPEDARARIRAQASSQERRAIATIWIDNEGSSDDLEEVARLVYERWLTP DAPLTV >gi|292820000|gb|ACYT02000074.1| GENE 3 2548 - 4617 2653 689 aa, chain + ## HITS:1 COG:MT1669 KEGG:ns NR:ns ## COG: MT1669 COG0556 # Protein_GI_number: 15841088 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Mycobacterium tuberculosis CDC1551 # 1 688 41 736 739 937 70.0 0 MTRQNKPFEVISPYTPSGDQPKAIRELAARIRDGEQDAVLMGATGTGKSATTAWLIEELQ RPALVLEPNKTLAAQLAAEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSIND EVERLRHSATNSLLTRRDTVVVSSVSCIYGLGTPEEYVARMIELERGMIIDRDALLRRFV AMQYVRNDLAFTRGTFRVRGDTIEIIPVYEELAIRIEMFGDEIESLAVLHPLTGDVIDHV DHTYLFPASHYVAGEERMKKAIASIEDELDDRLAWFRGQNKLLEEQRLRMRTTFDLEMLK EIGSCSGVENYSRHIDGRGPGTPPHTLLDYFPDDFLLIIDESHVTVPQIGAMFEGDMSRK RTLVDYGFRLPSAMDNRPLKWDEFTERIGQTVYLSATPGPYELERSDGVVEQIIRPTGLV DPLVVVKPTEGQIDDLLEQVRVRVERDERVLVTTLTKKMAEELTTYLAERGVKVEYLHSD VDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSTRSLIQTI GRAARNVSGEVHMYADNMTDSMNEAISETMRRREIQIAYNKEHGIDPQPLRKKISDVTDM LAREQVDTQTLLEGGYRKEKSKRERSDATGGGRAVISGQRAEAELAELIEELSAQMMIAA QHLQFEVAARLRDEIEDLKKELRAMKRAH >gi|292820000|gb|ACYT02000074.1| GENE 4 4895 - 5875 1217 326 aa, chain + ## HITS:1 COG:Cgl1921 KEGG:ns NR:ns ## COG: Cgl1921 COG0861 # Protein_GI_number: 19553171 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Corynebacterium glutamicum # 1 324 1 327 369 331 51.0 1e-90 MHVHALAWIVLAGIILTMIVVDIVAHVRTPHEPTLKEATWWSVAYIAIALIFGAIVWAVW GPQYGQEYLGGYITEKALSIDNLFVFVIILSTFRVPRKNQQEVLLAGIIIALVLRLIFIL AGAALIENFSWVFYLFGAWLLWTAISQVREGSSDDDDEEYRPPSIVRWVSKVVPVTDGFI GSRMLYRHGGRTYITPMLLCVIAIGTADVMFAVDSIPAIYSLTSEAYLVFAANAFSLLGL RQLYFLIDGLLDRIVFLHYGLAAILGFIGFKLINHALHTNELPFINGGHEVAAIPEPSIA FSLGFIVVTILVTVVASLAVSNKRRA >gi|292820000|gb|ACYT02000074.1| GENE 5 5934 - 6932 1211 332 aa, chain + ## HITS:1 COG:Cgl1921 KEGG:ns NR:ns ## COG: Cgl1921 COG0861 # Protein_GI_number: 19553171 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Corynebacterium glutamicum # 1 326 1 329 369 297 48.0 2e-80 MVVHPWAWGILALVAIGLVALDFLGHARNPHPPTAAEAARWTLFYVGLAAVFGVGIWLTN GWLYAQEFYAGWAMEWSLSVDNLFVFILILKAFRVPRENQQKALLFGIVIALLLRLVFIL LGAALVARFSWVFFIFGVWLLWTAFSQIKETATGGGDEEEYEENAFIRLVRRVLPITDGF IGDRMLYRHGGRTYLTPLFVVVLALGSADLMFAFDSIPAIFGITSQAFLVFACNVFALMG LRQLFFLVDALLGKLVYLGYGLGVILSFIGIKLILEALHANTLPFINGGRGVEWAPEISV SVSLGVIVVTLVITVIASLVRSAMDEEGADER >gi|292820000|gb|ACYT02000074.1| GENE 6 6922 - 9312 2569 796 aa, chain + ## HITS:1 COG:Rv0908 KEGG:ns NR:ns ## COG: Rv0908 COG0474 # Protein_GI_number: 15608048 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Mycobacterium tuberculosis H37Rv # 12 779 10 779 797 506 43.0 1e-143 MSADSLTIDEHGLTAAEVAERVARGAVNRVKDRTSRSVASIIRENVLTLFNGIIVAASII VLLFGDLRDGIFGGVMIINAVIGIVSELRAKRTLDSLAIVDAPQATVLRDGTLSVVPARD VVLDDVIDLTLGDQVSVDGTVLSSAGLEIDESLLTGESRPVKKKQGDQLLAGTSVVAGAG RMVATAVGERVYAQGLSEQARAFTRTVSEIQTSINRVLQVVSVMLLPIVVLTFYSQNRIA GGHGGDWREALVLSVASVIGMIPQGLVLLTSMNFAIGSATLARRGVLVQELPAVEVLARV DCLCLDKTGTLTTGGIRVRGVEVVSGDEVVVLRALASAASDRTNATAEAIWEHLGESERS GASDRIEWSVPFSSARKWSAWGSGHESWILGAPEFVIDEASAANAELLAKVRGIAQEGSR VVALVHADEAVVDDELPARRSVTALVVLEEDLRPDAAETLDYFRSQDVHVRVISGDNPTT VGALAAQAGLTAPDGTPARLMDARDLPEDLTSEAFIDAIENHDVFGRVTPEQKRAMVGAL QARDHCVAMTGDGVNDALALKDADLGIAMGNGTQATKAVAQIVLVDSKFSVLPGVLSEGR RIIANMERVSSLFLAKTTYAAVLVIVTALVGWRYPFLPRQFSYIDSLTIGIPAFFLALWP NPRRYVPGFLKRTLSLAMPTGIILAAAALTAFGIVDGPPQARESTAAILSLMLGAIWLLV ITSRPLSTWKWVLLVSVISATVGGVLIPPVRHFFSMVAPTGYEWLVILSVGACAALLTEV AQRIFYARQFARSLEG >gi|292820000|gb|ACYT02000074.1| GENE 7 9382 - 9684 416 100 aa, chain - ## HITS:1 COG:Cgl1920 KEGG:ns NR:ns ## COG: Cgl1920 COG2350 # Protein_GI_number: 19553170 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 8 100 1 95 95 81 43.0 4e-16 MGASVVRMAFYAVEYVYNPSMTETMDEVRPTHRAFLSGLLEQGVNIASGPLVGEIPGALI LINAESQADVERILNEDPFYVAEVIQARLIREWNPVIRAF >gi|292820000|gb|ACYT02000074.1| GENE 8 9721 - 12585 3994 954 aa, chain + ## HITS:1 COG:ML1392 KEGG:ns NR:ns ## COG: ML1392 COG0178 # Protein_GI_number: 15827727 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Mycobacterium leprae # 1 944 1 952 969 1327 68.0 0 MHDKLIIQGAREHNLKDVNLELPRDSMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSS YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTITEIHDYLRLLYARAGVAH CPECGARIQAQTPQQIVDRVRTMDEGTRFQVLSPVVRGRKGEYQDLIDELRSEGYTRAII DDEMVRLENAPKLEKKLKHTIEVVVDRLVVREGMRQRLTDSVETALRLSDGLVVIDCVDL DAEDPERRRRFSEKRSCPNDHPLMLDEIEPRTFSFNAPYGACPDCAGLGFRLEVDPELVV PDEELSLADGAVIPWNSNFKYHKKLLESLSKELGFAMGTPWKSLPKKVKDAVLYGKDYEV TVKFRNRWGRERSYTTGFEGAVKYIERKREETESAAVSEKLDSYMREIPCPTCHGARLRP EVLAVRIGDKSIAELSDMSIADARAFLTDVELEQRARSIAAPILTEIEARLAFLVDVGLT YLTLSRGAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRKLIATLERLRD LGNTLIVVEHDEETMEAADWIVDIGPGAGETGGWVVHSGPLSELLENRKSLTGQYLSGKR RIVLPPTRRPIDKKRVVTVKGARENNLKNVDVSFPLGVLTAVTGVSGSGKSTLVNGILYR TLASRLNGARMVPGRHRTITGIEQLDKVVHVDQSPIGRTPRSNPATYTGVWDQIRKLFAE TQEAKVRGYGPGRFSFNVKGGRCESCKGDGTLKIEMNFLPDVYVPCEVCHGARYNRETLE VEYKGKTVADVLDMPIAEAAQFFAPISRIARHLNTLVEVGLGYVRLGQSATTLSGGEAQR VKLASELQRRSTGRTVYVLDEPTTGLHSEDIRKLLLVLQSLADKGNTVIVIEHNLDVIKS ADWIIDMGPEGGAGGGTVVAQGTPEEVAKVGESFTGQYLAEVLAKEAARDAAAQ >gi|292820000|gb|ACYT02000074.1| GENE 9 12609 - 13094 584 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192763|ref|ZP_06609658.1| ## NR: gi|293192763|ref|ZP_06609658.1| polysaccharide exporter, PST family, MOP superfamily [Actinomyces odontolyticus F0309] # 1 161 4 164 164 249 100.0 3e-65 MVPGYRYFGHMYYWPAWVHLIVIVLMGVAAALTISALMARGVGRSRVFGLSCGFVAGIGN LSLCVLVQAEARHTWLMGMVGVLYTVAFVFLLMTLMSLWSGGSSGFLWSRAFHLFLVVAM AIAAIMEFAYRLAYWIPLPVAGVAVLLALFCAFVAGRNSRD >gi|292820000|gb|ACYT02000074.1| GENE 10 13186 - 15102 2543 638 aa, chain - ## HITS:1 COG:ML0887 KEGG:ns NR:ns ## COG: ML0887 COG1022 # Protein_GI_number: 15827409 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium leprae # 13 628 5 597 600 423 40.0 1e-118 MTVRRLADGSWESIATREATEDMNLPKMLHQRVASHPGQVAIERRSNVGTWRHVTMEAFL GEADSIARGLIGIGLEAGDHLAILAPTSYEWALIDVAALSCGAITVPIYETDSASQIAHI LADADVRIVITATTQQAELVESVRTDGVRHILSLDRGAERVLTSAAQGVSVEQVRERTDA VKLSDEATVIYTSGTTGMPKGVVLTHGNFISPMLQAYDFLPLLINDPKSRSLLFLPVAHV LARFVMYCLLAGQGVTAFSPDTRNLVNDIATFKPTMLLVVPRVMEKVYNAAAAKAGGGMK GRMFAWAAKQARALSKATAYMDSPLPESAVAGPGPDTTPIPDASAMPSPGPSTALKLRGR VADALVLSKVRAILGPNLHTIISGGAPLALDLANFYRGLGITLLQGYGLSETTGPISVET PQDFPPDSVGFPWPGNRMKIAPDGELLVQGISVSKGYHNLPEATAEAYIDGWFKTGDLAS IDDRGHLRITGRKKELIVTAGGKNVSPEILEESLSTHPLIANIIVVGDNRPYIGALIALD TEMLPEWLAAHGLPVVDAAQAANLPEVRDSLEKAIARANKAVSRAESIRRYRIVNAAFTV ENGYMTPSLKLKRHRVLADYADEVDALYASGEAEKSQE >gi|292820000|gb|ACYT02000074.1| GENE 11 15149 - 17014 2592 621 aa, chain - ## HITS:1 COG:ML0887 KEGG:ns NR:ns ## COG: ML0887 COG1022 # Protein_GI_number: 15827409 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium leprae # 9 600 4 597 600 475 44.0 1e-133 MKRMRDGSYTIKPTYKVGEHDIVPDMLAKRALLHPGQVAVEQRSSVGSIRSLTTSELQRQ VEYTACGLIGLGVQAGDAVAILAPTSYEWLLLDLALLSIGAITVPIYESDSAAQIQHILT DAHVTRVFTATTQQAELVHSVAPEHTVSVDSFDRGAQRLIARAAAGITIENVQQRRAAIS SSDIATIIYTSGTTGNPKGVALTHANFVATALGARQILSEVIDSPETRLLLFLPVAHVLA RLVMHVILSGQGVLGFSPSIKNLLPDIQAFKPSVLLVVPRVLEKVYNAASSKAGGGFKGR MFAWSAKQARTFSVASAKTFGPGLFKKMRHGIADALVLKKIRSVLGPNLRYIVSGGAPLA TDLAHFYAGMGITLIQGYGLSETTGPISVQHIGKNPVGGVGLPLPGNFIKIAKDGEILVR GQSVMPGYYHLPEQTAEVMPDGKWFHTGDLGSIDRKGQLTITGRKKELIVTAGGKNVSPE VLEDSLATHPLIANVIVVGDQRPYVGALFTLDADMLPDWLAKHGLPQCSPTEAAELPAVR ESLEKAVERANKAVSRAESIRKFRIIDATFTVENGYVTPSMKLRRRKVIADYAHEIDALY GGPVSAEQRTKRGLFGRAKKN >gi|292820000|gb|ACYT02000074.1| GENE 12 17130 - 18554 2231 474 aa, chain - ## HITS:1 COG:ML0925 KEGG:ns NR:ns ## COG: ML0925 COG0174 # Protein_GI_number: 15827444 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Mycobacterium leprae # 4 474 5 478 478 621 62.0 1e-178 MFTSTQEVADFISEQNIELVDVRFCDVPGVQQHFTIPMSEFLDAALSDGLMFDGSSVRGF TAIHESDMKLIPDISSAFVDPFRDRKTLVVNFSIVDPFTDEPFSRDPRQVAAKAEAYLRS TGIADECFIGAEAEFYLFDDVRYQVTPHNTFFSVDSPEAYWNTGRAEEGGNMGYKVPIKG GYFPVSPADKYADVRDEMSRLLEEVGLTIERAHHEVGSGGQQEINYRFATLQTAADDMMK FKYVIKNSALEFGHSATFMPKPLFGDNGSGMHTHISLWKNGEPLFYDERGYGSLSDTARW FIGGLLEHAPALLAFTNPSVNSFRRLVPGFEAPINLVYSARNRSACIRIPVTGTSPKAKR VEYRVPDPSANPYLAFSACLMAGIDGIKRRIEPAAPIDKDLYELPPAEYQDIAKLPSSLE AALDALREDHEFLTEGDVFTQDLIDTWLEYKETNEVAPMRAYPHPYEYQMYYDL >gi|292820000|gb|ACYT02000074.1| GENE 13 18741 - 20756 1735 671 aa, chain + ## HITS:1 COG:Cgl1554 KEGG:ns NR:ns ## COG: Cgl1554 COG0322 # Protein_GI_number: 19552804 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Corynebacterium glutamicum # 1 665 1 695 696 665 52.0 0 MADPSTYRPRTGDIPTSPGVYRFSDPQGRVIYVGKAKNLRNRLTNYFQDLANLHPRTQQM VTTASAVQWTVVRSEVEALTLEFTWIKEFNPRFNVMFKDDKSYPYLAVSMGERFPRVQVT RERKRVGSRYFGPYTQVWAIRETIDQLLRVFPMRSCSAGVFQRAKAQGRPCLLGYIDKCA APCVGRISMEEHRELAEGLCQFMEGRTGPVIRDLEEQMRQASMELNFEGAAKLRDDVKAL RTVLERNAVVLDDGSDADVFSLVSDDLDAAVHVFHVRGGRIRGTRGWVIERVDGADDAAL MARLLEQVYSSASMDEAGAGKAAKVAAVSVDDVAHTPTSAIPREVLVSVEPEEKETIARW LAEIRGASVSVHVPKRGPKAQIMDTVTENARQALALHRTKRAGDITARSKALEQLAENLD LPGAPLRIECYDVSHTGGENQVASMVVFEDGMPRKDAYRTYNIRGEGGNGTPDDTSAMNE VLTRRFSRLLAEEAGVDGEDEDGVAYASGPIDAMTGRPKRFSYRPDLVVVDGGLPQVNAA RAALDAVGADVPVVGLAKRLEEVWIPGEDFPLILPRTSEALYLLQYLRDESHRFAITKHR KRRSKAQRRSVLDSIPGLGPARQAALLKHFGSVKRIREATPEQIAEVKGVGLGLARTIRD RLATSSREDTP >gi|292820000|gb|ACYT02000074.1| GENE 14 20753 - 21976 1280 407 aa, chain + ## HITS:1 COG:alr1299 KEGG:ns NR:ns ## COG: alr1299 COG0027 # Protein_GI_number: 17228794 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Nostoc sp. PCC 7120 # 7 399 5 388 391 350 49.0 3e-96 MTKTLPVPLPARVLLLGSGELGKEVVIALQRYGCTVIACDSYGNAPAMQVADESRVFDMS DPQALRAVLDSVDVDLIVPEVEAIATDELSAYEERGVRVVPNAFAVQATMDRQRIRNLAA SLPGVRTSAFRFARSEVELAAALDEVGYPAFVKPTMSSSGHGQSRVTGPEQAASAWAHAE EDARATTGVVIVEEGVDFDYEITLLTVRSWDAASGSVVTSFCAPIGHRQEGGDYVESWQP MAMSEAALEGARQMAKAVTDALAEAGNGPCLGIFGVEFFVKGDDVWFSELSPRPHDTGMV TMVTQAQSEFELHARAILGLPVSTAQSTPGASAVIKSTSAVDVPVYNGVARALESADIVR IFGKPVSRAGRRVGVVATTASTPKEARVIVRRSAAGIAIDEASAPSV >gi|292820000|gb|ACYT02000074.1| GENE 15 22019 - 23014 1099 331 aa, chain + ## HITS:1 COG:ML0563 KEGG:ns NR:ns ## COG: ML0563 COG1660 # Protein_GI_number: 15827214 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Mycobacterium leprae # 46 331 12 298 298 275 54.0 7e-74 MTEHTPTDAHDADEAQTSSMNEENPPTVPEGIAVRDMARVKYEPRASNEVLIITGYSGAG RTGAARALEDLDWYVVDNLPPTMLPALVGMMSNDPAAGVHRLAVGVDVRSRTFFRTLDAT LEQLKGAGIVYRVIFLEASPETLVRRYESNRRPHPLQGAGTLMDGIKAEMRLLAPLRRAA DEVIDTSTMSVHDLTRRIRDIVAGEERPLQVTVESFGFKHGLPLDADHVVDVRFLKNPYW VDELRHLTGKDQAVADYVLSQPGARDFALGYADLLAPMLSGYLAELKPFVTIAVGCTGGK HRSVASSEAIAERLRSHGYTVRVMHRDIGRD >gi|292820000|gb|ACYT02000074.1| GENE 16 23014 - 24018 962 334 aa, chain + ## HITS:1 COG:MT1465 KEGG:ns NR:ns ## COG: MT1465 COG0391 # Protein_GI_number: 15840879 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 19 315 5 307 342 236 49.0 5e-62 MPYLDAAGWVQRGESGQNIVALGGGHGLSATLRALRHITRALTAVVTVADDGGSSGRLRQ EMPILPPGDLRMALASLCEESEWGLTWRDVMQLRLDTTGPLNGHALGNLLISGLWQLLED PVEGLDWVGRLLGAQGRVLPMSSTPIDIEADMNDGGRRYVVSGQSKVAVAPGTVEHVRIT PEAPEVPSAVTEAISEADWVVLGPGSWYTSVIPHLLVPELNRALATTDAHRALVLNLARQ RGETDLMSTADHVRVLREYAPMLKLDVIVADPTACDDIDDLIVAAEELGARVLLRQVRTG DGAPHHDPLRLAAALRDAFDGFLGEVGEPETWLP >gi|292820000|gb|ACYT02000074.1| GENE 17 24081 - 25046 1031 321 aa, chain + ## HITS:1 COG:Cgl1551 KEGG:ns NR:ns ## COG: Cgl1551 COG1481 # Protein_GI_number: 19552801 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 320 7 326 327 301 58.0 1e-81 MKDELARAVVTTPSEVAAEVSATLRFAGGLHLVGGRILVEAELDSPVAARRLRTYLQALY NAESSVVVVSGSSLRRGKRYVVRVVHKADELARLTGLVDSLRRPVRGLPPVLVASGTAEA AAIWRGAFLARGSLMEPGRSSSLEITCPGPEVALAMVGCARKLGASARSKEVRGTDRISV RDSDAIGTLISAMGAPQTFEAWQERRERREARGSANRLANFDDANLRRSARAAVAAGARV ERAFEILGDDVPAHLLEAGTLRLQYKQASLEELGKHTNPPLTKDAVAGRIRRLLALADKV AHERGIPDTESALTLDMLEED >gi|292820000|gb|ACYT02000074.1| GENE 18 25088 - 25249 145 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLLLVPTRDTVFDATGRAGCLPGPQMSAVPAVPNLHLKADSVAIQFENPHVG >gi|292820000|gb|ACYT02000074.1| GENE 19 25251 - 26258 1687 335 aa, chain + ## HITS:1 COG:Cgl1550 KEGG:ns NR:ns ## COG: Cgl1550 COG0057 # Protein_GI_number: 19552800 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Corynebacterium glutamicum # 1 334 1 334 334 424 65.0 1e-118 MTTRVGINGFGRIGRNFFRAALEQGADIEIVAVNDLTDNKTLAHLLKYDSITGRFQGEVS YDDEGIVVDGKHIKVLAQRNPADLPWGELGVEVVVESTGFFTDGEKAKAHLDGGAKKVVI SAPAKNVDGTFVMGVNEADYDNATMNIVSNASCTTNCLAPLAKVLEENFGIERGIMTTIH SYTGDQRVLDAPHSDLRRARAAALNMIPTKTGAAQAVALVLPALEGKFDGLAVRVPTPTG SLTDLTFIAKNEVSVEAVKAAVKAAAEGKLKGVLKYTEDPIVSSDIVGDPHTSIFDATET KVIGNLVKVLSWYDNEWGYSNALVRLTALIGSKLA >gi|292820000|gb|ACYT02000074.1| GENE 20 26366 - 27556 1849 396 aa, chain + ## HITS:1 COG:Cgl1549 KEGG:ns NR:ns ## COG: Cgl1549 COG0126 # Protein_GI_number: 19552799 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Corynebacterium glutamicum # 4 394 3 403 405 400 58.0 1e-111 MRTISTLGDLRGKRVLVRSDFNVPLKDGVITDDGRIRAALPTLKTLTDAGAKVVIMAHLG RPKGQVDPAFSLAPVATRLAELSGVKVTLASDVVGPSATETVAALGEGEIALLENVRYDA RETSKVDEEREELAREYAKLGDAFVSDGFGVVHRKQASVYDIAKILPSAAGLLVLKEIES LSKVTGDPERPYGVVLGGSKVSDKLGVIANLLKKADMLFIGGGMAFTFLAAQGHSVGKSL LEEDQIETVKGYIAEAAERGVDLVLPIDVVVAPEFAADAPATVVKVDAIPDDQMGLDIGP ESAKLFADKLATAKTVAWNGPMGVFEFDAFAGGTRAVAEALSTGSMFSVIGGGDSAAAVR LLGFDENTFSHISTGGGASLELLEGKVLPGIAVLED >gi|292820000|gb|ACYT02000074.1| GENE 21 27560 - 28336 1294 258 aa, chain + ## HITS:1 COG:Cgl1548 KEGG:ns NR:ns ## COG: Cgl1548 COG0149 # Protein_GI_number: 19552798 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Corynebacterium glutamicum # 1 248 1 246 259 278 59.0 6e-75 MARTPLMAGNWKMNLDHLEANHLVQGLEMALSDAEHDYSKCEVLVIPPFTDIRTVQTIVD ADDLQIKYGAQDVSIHDNGAYTGEISTEMLTKLGVTYVVMGHSERREYHGESDELVGAKA RKVFDAGMTPILCCGEALEVRKAGTYVEFVLGQIRAALAGWKPEEVAKIVIAYEPIWAIG TGETASAEDAQEVCGAIRAALAEDFGAETAESTRILYGGSAKPDNIKELMAQPDVDGGLV GGASLKADSFAAMATFYA >gi|292820000|gb|ACYT02000074.1| GENE 22 28454 - 28744 508 96 aa, chain + ## HITS:1 COG:Rv1440 KEGG:ns NR:ns ## COG: Rv1440 COG1314 # Protein_GI_number: 15608578 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Mycobacterium tuberculosis H37Rv # 13 94 35 116 117 62 48.0 2e-10 MCPDPGRTAIETGLTVTILNNVLIVLIFLTSILLTLTVLMHKGQGGGLSDMFGGGISSSA GSSGVAERNLNRITLGTLLIWLVCIIGYALLAKFGA >gi|292820000|gb|ACYT02000074.1| GENE 23 28863 - 29606 686 247 aa, chain - ## HITS:1 COG:MT1492 KEGG:ns NR:ns ## COG: MT1492 COG0363 # Protein_GI_number: 15840904 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Mycobacterium tuberculosis CDC1551 # 6 244 4 245 247 118 32.0 1e-26 MVTVHTLEVYPTVEDLNEAVGRAFLARLSTLIDEAGADSRVNVAISGGAITTSLLPSLLP FVGDVDWSRVRAWLVDERYVPAGNEDRNDDQAWEGFLHAASGVEFIRMPTSDASAPGAGS LDEATAAFADTWRELMGEGSFDIALIGMGPDGHICSLFPGRVDMDEASPILAIRNSPKPP PERITVSMPVMRASGEVWLTTAGAAKADALGQAFAGASPLTLPVAGVLSPTTRVYLDEAA AARIKLA >gi|292820000|gb|ACYT02000074.1| GENE 24 29609 - 30550 889 313 aa, chain - ## HITS:1 COG:Rv1446c KEGG:ns NR:ns ## COG: Rv1446c COG3429 # Protein_GI_number: 15608584 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-P dehydrogenase subunit # Organism: Mycobacterium tuberculosis H37Rv # 1 295 1 290 303 177 37.0 2e-44 MIITLKNTTSAEVASRIVELRDERGSAALSRVLTLLICVPDLIDVDNAIEVSDAVSREHP CRVIVIVEPESTEGTARLNAQIRVGDAAGLSDIIILEPRGEAASNIDSLVMPLLQSDTPV VTYWPVVPPQNPGAHPLGRLAVKRITDSRATECPMDTLSALSAVYTPGDTDLAWAGVTLW RALLAAVAEDFDRLPASIRVAGNATHPSPFLVAAWLHHQLGVPVERVVDPEALTITDITF FFDDDTTVSLSRSASSSVACLSRPGLEDRSVNLARRSVQDSLMEDLRRMDPDVYYGELLT KELPRLAACSESE >gi|292820000|gb|ACYT02000074.1| GENE 25 30547 - 32073 1948 508 aa, chain - ## HITS:1 COG:MT1494 KEGG:ns NR:ns ## COG: MT1494 COG0364 # Protein_GI_number: 15840906 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 8 508 14 514 514 697 66.0 0 MTNEIPTLRDPQDRRLPRISPPCGLVIFGITGDLARKKLLPAIYDLANRGLLHPAFSLTG FARRDWSPQDFEEYVRASIEAHTRTGFNEGTWNQLRSGLRFVSGTFDDPDAYRQLADTVA ELDHSRGTGGNHAFYLSIPPSYFPVVAKHLSDTGLNKRQGREWRRVIIEKPFGHDLESAQ ELSDVISQIFDEQDVFRIDHYLGKETVQNIMAMRFANAMFEPLWKANYVDSVQITMAEDI GIGTRAGYYDGIGAARDIIQNHLLQLMALTAMEEPVHFTPEEIRAEKEKVLSAVRLPEDL AIDTARGQYAGGWQGGDQVRGYLEEDGIPADSTTETFAAIKLFVDTRRWAGVPFYLRAGK RLGKRVTEIAVIFKRSAHVPFGNSDLSESGQNALVIRVQPDEGLTLKLGAKVPGTSMQVR DVTMDFAYGHAFTEDSPEAYERLILDALVGSAPLFPHQREVEASWKILDPILSFWETQGQ PEPYAPGTWGPQSAHDMLARDGRFWRLP >gi|292820000|gb|ACYT02000074.1| GENE 26 32241 - 34424 3108 727 aa, chain - ## HITS:1 COG:Cgl1536 KEGG:ns NR:ns ## COG: Cgl1536 COG0021 # Protein_GI_number: 19552786 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Corynebacterium glutamicum # 33 724 17 700 700 758 58.0 0 MCVSAIGMRTFSLDCDAVNHFRPNAGAQQLETNVSLHWDHIDDEAVKTAKLLAADAVEQA GSGHPGTAISLAPAAYLLYNKVMNVDPADPRWIGRDRFILSAGHSSLTQYVQLYLSGFGL ELDDIKTLRTAGSLTPGHPEYGHTKGVEITTGPLGTGIASAVGFAMNARRVHGLLDPETP LGESVFDHNVYVIAGDGCFEEGVSAEASSLAGTQELGNITVIWDDNHISIEDDTSIAFNE DVLARYEAYGWHVQRVDWLSEDGSYEENTAALNDALDAAQAETKKPSLIALRTIIGWPTP GKQNTGGIHGSKLGSEALKGLKEALGADPEKMFDADAAIVDEVRARAAARAAEYRKDWDA RFEAWKAAHPEQAALLERLLAGRLPEGWEAALPTFEEGKAIATRAASGQVLNAIAPVLPE LWGGSADLAGSNNTFLKGEPSFLPAHRSSSSFSGDEFGRNLHFGVREFAMGAALNGIAAD GFTRAYGGTFFVFSDFMRGAVRLAALMDLPVTYVWTHDSIGVGEDGPTHQPIEHLASYRA IPNFAVVRPADAAETAASWKAILEQSHPAAIILSRQNLPNPARGEGTGLATTEDLARGAY VLADTEGTPDVILLASGSEVSVALDAREALAADGIAARVVSVPCLDWFEAQDREYRDSVL PPSVRARVSVEAGIALPWYRWIGDAGRAVSIEHFGASAPGELLFKEYGIDAEHVAAAAKE SIDAARS >gi|292820000|gb|ACYT02000074.1| GENE 27 34402 - 35400 384 332 aa, chain + ## HITS:1 COG:Cgl1385 KEGG:ns NR:ns ## COG: Cgl1385 COG4974 # Protein_GI_number: 19552635 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Corynebacterium glutamicum # 24 324 6 304 304 273 53.0 4e-73 MPIALTHICCTVAYPVTMTSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSR GKVNVEDISPRDIEDYTMRLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAA AQLHAPRQGRHLPKALSVDEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLS ADDLDLDGDVPVVRLFGKGRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNS RGGALSRQSAWTAIRRAAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVA TTQIYTQVTATVLREVFTLSHPRARGTDASAR >gi|292820000|gb|ACYT02000074.1| GENE 28 35418 - 36281 959 287 aa, chain + ## HITS:1 COG:Rv1708 KEGG:ns NR:ns ## COG: Rv1708 COG1192 # Protein_GI_number: 15608846 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Mycobacterium tuberculosis H37Rv # 17 283 49 315 318 329 61.0 5e-90 MTTNSHPTLTPDLHDEPVDFPVPAPLSGHGPARVIAMCNQKGGVGKTTTTINLGAALAEY GRRVLIVDFDPQGAASVGLGINALDMEQTIYTLLMNPKADVKATICHTSTENLDIIPANI DLSAAEVQLVNEVARESALARVLRHVESDYDVVLIDCQPSLGLLAVNALTAAHGVIVPVE AEFFALRGVALLVETIETVRDRINPRLKIDGIVATMVDSRTLHSREVLQRLQEAFGDLVF DTRIGRTIKFPDASVATEPIISYAPNHAGAHAYRRLAREVIARGDAA >gi|292820000|gb|ACYT02000074.1| GENE 29 36265 - 37143 360 292 aa, chain + ## HITS:1 COG:MT1750 KEGG:ns NR:ns ## COG: MT1750 COG1354 # Protein_GI_number: 15841169 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 17 255 23 268 278 169 48.0 5e-42 MATRPDSFEVQGEFDLFAVSLPVFEGPFDLLLSLIARKKLDITEVALAQVTDEFIAFMKA SPDLSRTTEFLVVAATLLDMKAAHLLPSVDEEDNASEADLEARDLLFSRLLQYRAFKEAA KHIDARMGEYGSYVARDVPLEPHFASLLPELRWLTTPEDLARLAADALSSTNPTVQVAHL HDPVVPVRVQALLVSSMLAEAGRITFHQLVEDAPTRAVVVSRFLALLELYRRGAVEFEQD GALGTLTIQWTDSEGSIDIDVDDYTGAGAAHSATASSPHVAAIETEGEDADE >gi|292820000|gb|ACYT02000074.1| GENE 30 37136 - 37696 484 186 aa, chain + ## HITS:1 COG:ML1369 KEGG:ns NR:ns ## COG: ML1369 COG1386 # Protein_GI_number: 15827714 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Mycobacterium leprae # 1 186 23 205 231 145 45.0 4e-35 MSENTLRGAIEAILMVASEPVAASDLAEVLGASTADIEQHMRALAAEYLGEGQERPRGFE LREVAGGWRIYSARAYADVVGRFVVGSSHARLSQAALETLAVIAYRQPISRARICRIRGV NVDGVVRTLLARGLVEETGLTPSGARLYGTTGEFLEKMGLTSLSELVPLAPYLPDADALE ELEEEL >gi|292820000|gb|ACYT02000074.1| GENE 31 37693 - 38442 1108 249 aa, chain + ## HITS:1 COG:MT1751.1 KEGG:ns NR:ns ## COG: MT1751.1 COG1187 # Protein_GI_number: 15841171 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Mycobacterium tuberculosis CDC1551 # 10 249 13 254 254 240 55.0 2e-63 MRANPYTEGGVRLQKVLAQAGVASRRASEQMIADGRVSVDGTVVRNQGVRVDPTKQVIHV DGERLILDETKHIVLAVNKPIGTVSTMSDPEGRPTIADLIADYPERLYHVGRLDIDTSGL LLLTNDGELANRLTHPKYEIRKTYVARLHGEVKPGVKRTLMNGIELEDGPIKVDSFRIVD TYGDITTVEIVVHEGRNRLVRRMMEAVGYPVRELVRTGFGPISLDHLKQGTTRRVKGNAL SALYGAVGL >gi|292820000|gb|ACYT02000074.1| GENE 32 38439 - 39638 651 399 aa, chain + ## HITS:1 COG:aq_1755 KEGG:ns NR:ns ## COG: aq_1755 COG0287 # Protein_GI_number: 15606822 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Aquifex aeolicus # 18 283 33 284 311 100 28.0 4e-21 MNTSDGVGARVVQTAGPVLIIGSGLLGASLGLALRAGGVRVYLEDASPTSLHLASDVGAG QSFGDVLAEAGVRPRECGSDTPSYQAPSIVVVATPPDVADRVIVESLLRFPDAIVTDVAS VKDAVVADVLRGLEREGRLEEASRYVGSHPMAGRERSGAGAADADLFYGRPWVIVAHEST WPRAVLVARALATDVGAVPLEMNAGTHDYAVALVSHVPQLVSSMLAARLVDAPAQALGLA GQGLRDTARIAASDPRLWTAILAGNAGPVADILRELRTDLDDLLTHLDAAAELGPLRGGS VGAINRVMTAGNQGVARIPGKHGGAPSRYREIEVLIPDEPGALGRLFSELGEAGINIEDL VLEHSAGAQAGVARVMIDPAVVDRAVADLQQRGWRLITH >gi|292820000|gb|ACYT02000074.1| GENE 33 39665 - 40399 694 244 aa, chain + ## HITS:1 COG:alr2936_2 KEGG:ns NR:ns ## COG: alr2936_2 COG0283 # Protein_GI_number: 17230428 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Nostoc sp. PCC 7120 # 17 237 6 226 229 125 38.0 1e-28 MNDTQRRDAISRVGITIAIDGPAGSGKSTVSKALATRLGIGYLDTGAMYRALTWYCLDEG IDLEDTAAVADAADRMPLRLVSDPSDPHVWIGDSEITLEIREPRIALAIKHISTNLDVRA WMATEQRRRMMEAREQGSGMIAEGRDITTVVCPDADVRVLLLADQEARLRRRTLELYGDA AEEHMEIVRAQVEGRDKADSQVSEFMVAAPGVETVDSTGLDIEGVCEAVLAFVDRDLEVR DALR >gi|292820000|gb|ACYT02000074.1| GENE 34 40464 - 41024 500 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192787|ref|ZP_06609682.1| ## NR: gi|293192787|ref|ZP_06609682.1| dehydrin Rab18 [Actinomyces odontolyticus F0309] # 1 186 1 186 186 218 100.0 1e-55 MNSRYLLSVAATLALAVAGLIAPTFVTQGSPAAASPMVSVSSSAPAYDPAAVTAGTRAQS QPVTAPTKRIRIRSHSHNPTITIISWILAILIVGGGILVRYAIFKATQRNSTPPTAFNGP NGPQYGVTGSNYGTPGTGYGTAGTGYGTAGTGYGTAADAAQPGSPAYGTGTYGHQQGVQG PYGTGF >gi|292820000|gb|ACYT02000074.1| GENE 35 41797 - 42309 588 170 aa, chain - ## HITS:1 COG:no KEGG:Arch_0990 NR:ns ## KEGG: Arch_0990 # Name: not_defined # Def: membrane-flanked domain protein # Organism: A.haemolyticum # Pathway: not_defined # 1 158 1 158 166 119 48.0 3e-26 MSLSKKLLSQDEVVVRHMHTHIKTLLPAINIESILVIAAAVGSFFVPENARYWALATIWI AVLVLSIPLIVIPWIKWSSTTYTVTTKRVITRTGIFTRTGHDLPLSRISDIQIEKNFDDR FFGCGTLALQTSADDPLLLHDVPKVEMVQVEISNLLFNDIQGAIDADPTS >gi|292820000|gb|ACYT02000074.1| GENE 36 42370 - 43005 221 211 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 26 200 3 173 185 89 31 5e-17 MDTTLTQSTVAPLASGLTLCDDGLVRPTWASHDALLRSYYDTEWGLPVHDEAGVFERLVL EGFQAGLSWRTVLAKREAFRAAFEGFIPDRVAAFTEEDVDCLVSTPGIIHNRRKIEAAIS NARATVAMRNDSPTADGPSHLGELVWSYRPTLNPLPRSKDEVPTQLPESVALAANLKSLG FCFVGPTTMLALMAAIGIVNTDIVGTHRRPR >gi|292820000|gb|ACYT02000074.1| GENE 37 43164 - 44717 1798 517 aa, chain - ## HITS:1 COG:MT1753 KEGG:ns NR:ns ## COG: MT1753 COG1160 # Protein_GI_number: 15841173 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Mycobacterium tuberculosis CDC1551 # 57 515 8 458 463 513 64.0 1e-145 MNDFDNQPDATAEFDADAAENYIADAAGAAPDAIELSDEETEARARLMRANLDQFDLDEE DLALLAGESALADSDDVAAGLPVLAVVGRPNVGKSTLVNRILGRREAVVQDTPGVTRDRV SYPAEWAGRDFTLVDTGGWEIDVKGLDRSVAEQAEIAVDLADAVVLVLDATVGVTASDER IVEMLRAKKKPIILAANKVDSPLQEADAAYLWSLGLGEPHPISALHGRGTGDLLDVVMEV LPTESAVASALPSGGPRRVALVGRPNVGKSSLLNALAGGERVVVNELAGTTRDPVDELIE LDGRSWWFVDTAGIRRKMHRTTGADYYASIRTQAAIEKAEVALVLIDGSTPLTEQDVRVV QQVIDAGRALVVVTNKWDLVDEDRQKEIKNELERELVQIQWAPRINLAAKTGWHTNRIVR ALDTALEGWETRIPTGQLNAFLGQLVAAHPHPLRGGKQPRILFGTQASSKPPRFVLFTTG FLDPGYRRFIERRLRETFGFAGTPIQISVRVREKRRR >gi|292820000|gb|ACYT02000074.1| GENE 38 44797 - 46377 1633 526 aa, chain - ## HITS:1 COG:slr0528 KEGG:ns NR:ns ## COG: slr0528 COG0769 # Protein_GI_number: 16332016 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Synechocystis # 47 518 37 500 505 263 37.0 5e-70 MTSVTDIRPTIAPVSLKAALAGLDIQGFYAADGQLAQIAESPLSLRGITVSSDDCESDWL FVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGLGVPVIQVADPRAIVPQLCA NIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTVETHVGPISFEAVRTT AEAPVVARFLAATEQYECGAGVIELSAHALSLHRVDGIVFDVAAFTNLQHDHLDYYGDME NYFQAKALLFTPEHSRHGVVCVDDEWGRRLAQQATVPVTTVSALTEETADWQVRDVTPDQ TIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIP GRMEKVNPTPGGQPLVIVDYAHTPEALEWTLRSTRELTSGRVVVVFGTDGDRDATKREHL AQIAAREADVLWVTDENPRTEVPQEIRDYLLRGIASVRPGMEDVTEVTTCRRDAVRRAIL AAEPGDTVIITGKGAEWYQEVQGIHHRYNDVPVAAEVLAGDVRSHE >gi|292820000|gb|ACYT02000074.1| GENE 39 46449 - 49028 2285 859 aa, chain + ## HITS:1 COG:MT2542 KEGG:ns NR:ns ## COG: MT2542 COG0308 # Protein_GI_number: 15841991 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Mycobacterium tuberculosis CDC1551 # 4 765 6 773 861 456 38.0 1e-128 MQILTRNEATHRAAHLHVSAIDVVVDVRNAQDTTNPTYPVTSTLTLTSDEERTFIDIAGE VSDVLLNGESHPFDDDDDRVWVDGLPVGETITLEVRALASYSRSGEGLHRYTDPEDGEVY LYTQFEPNDAHRAWPCVDQPDVKPEWTFHVIAPAGWVVSSNGVETAVEVVDDSGALRHDF TATRPLSSYITAIVAGPWAVIEGGTWSGGASDGGHAELELRLLCRRTLARYLDSDDVFEV TRAGLDFFHERYGVTFPWGSYDQVYVPEYNLGAMENPGCITFNENYISRSTPTFSERQRR ANTTLHEMCHMWFGDLATPSWWDDLWLKESFAENQGASAIATATRYVGEWANFAMNRKIW AYTQDQMPTTHPIAADIPDVAAAKTNFDGITYAKGASVLKQLVAWVGEDAFYEGARRYFA EHQFGATNLQDLLVALEGASQQVLSSWKSAWLETSGPSTLSASWVTDSVGAITDFTLHQG GEACNGVLRPHRVTVSTWRVAAGALERTHVFDVRIDGDSAPIDPEGVVAVPGGAASADLV VVNDDDLTYAISRLDERSTDVALAYVGTIDAAITRAVIWASLWNAVRDGLLDPRRFVVAV LNAVPSETEPAIRDRLLLFVAEAISSFLPGQARSDVHDQVLATTIRLSRETEDSDAWRSY TRAFIAEFAARGGDEYEATVRDFASSDNPDIAWRARRALAARGLVDAESIEAWRSADGSG EAARMSVEALASLPLEEARARAWESVFSDSLSNDYLTATLAGLQASSWESETGIESAVER MISYWESHTIGMALRYANGVLALGVDVDRDGSVERSVGLLRRWIDEHADAPAQLRRIVVE HLDSFERDERVQRRWSSGQ >gi|292820000|gb|ACYT02000074.1| GENE 40 49115 - 49885 443 256 aa, chain + ## HITS:1 COG:MT1871 KEGG:ns NR:ns ## COG: MT1871 COG3879 # Protein_GI_number: 15841293 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 2 247 34 307 309 87 32.0 2e-17 MSLLTALLANPLDAGYEHYQADHGSWPAGLVSRIAVFAVAVALGFGSVIAIDSLRRPAND VKADLKEQAATRSSNVEALSDELQSLGRAIDDLSQSGSPIPVDGARDLVTATRPVSGPGI TVTLTDRSGPGKGSGAVRDQDVAMVVNALWAAGAEAISVNGQRIGPDTFVRTAGAAILVN VTPVSSPYEVTAIGDSNALSVALVRGATGDYLSAAQSVSGMTVSSKVSQSLSMEALAPSS SQYAQPLDTQPEGDTQ >gi|292820000|gb|ACYT02000074.1| GENE 41 49882 - 50214 453 110 aa, chain + ## HITS:1 COG:MT1872 KEGG:ns NR:ns ## COG: MT1872 COG3856 # Protein_GI_number: 15841294 # Func_class: S Function unknown # Function: Uncharacterized conserved protein (small basic protein) # Organism: Mycobacterium tuberculosis CDC1551 # 1 110 12 121 121 87 56.0 4e-18 MIAVIGLIIGIVLGVLLDPTVPAWLAPFLPVAVVAGLDALFGAGRAWLEGRFADRVFVTS FFWNVVVACLLVFLGTQLGVGSAMTTAVVVVLGIRIFSNTASIRRLLLKA >gi|292820000|gb|ACYT02000074.1| GENE 42 50216 - 51016 649 266 aa, chain + ## HITS:1 COG:MT1873 KEGG:ns NR:ns ## COG: MT1873 COG3879 # Protein_GI_number: 15841295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 54 263 74 288 292 97 30.0 2e-20 MSEQNLETVPSAPESEPAPRWHSVHREPHSGPRLWARARQAFFALPRGLHVVMLVIFMIL GFALVTQVRAQRSDPLEGLSEQDLVTVLDELGTQEQNLRTRRGELSSELDDLRSAADEAQ AREQAARKAETQAQIAAGTVPVHGPGVTVSVVDAGANLTSTQFVMTLGELRNAGAEAIEL NGIRLSTRSSFTGQAGSIAVDGIPISSPYTWKVIGEPQTIATALDIQAGSAAQMRAKGAN VAITPSTDITIESIATPRPPQFATYQ >gi|292820000|gb|ACYT02000074.1| GENE 43 51120 - 51554 496 144 aa, chain + ## HITS:1 COG:MT1875 KEGG:ns NR:ns ## COG: MT1875 COG1716 # Protein_GI_number: 15841297 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Mycobacterium tuberculosis CDC1551 # 38 144 47 153 162 125 63.0 2e-29 MSDNQPLDPTATSIFGLAPVTEDVEEAPVALSARDREAVEALPAGSALLIVQRGPNTGAR FLLDPEVTNAGRSPKADIFLDDVTVSRKHCQFIASNGGHIVRDSGSLNGTYVNRERVDSI ELHAGDEVQIGKYRLTYQPSTKQA >gi|292820000|gb|ACYT02000074.1| GENE 44 51556 - 52323 357 255 aa, chain + ## HITS:1 COG:Cgl1407 KEGG:ns NR:ns ## COG: Cgl1407 COG0789 # Protein_GI_number: 19552657 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 30 246 29 245 252 130 36.0 2e-30 MCAALARRHVVASAQEVTSWPHDADHSPELSIGRVVDALKDEFPAISLSKVRYLESEGLV SPARTGSGYRKYSAADVERLRYVLTEQRDSFTPLSVIRGQLDALDAGHELVRRRVAQVVS SEGQTVSLGGRRAIPAADLSDLTGVDMDTLERYARLGLITPDLAGYFPARCVQAVSTIAR LESAGVDVRVLRAVRQGAERSADIIDQTVSSQRGRGRGADRERARARAIELGDLFAELHR DMLAVAVSSLAEDGD >gi|292820000|gb|ACYT02000074.1| GENE 45 52329 - 52439 109 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNMKVRLAGSVIDRASLVLYRSPVLITSYLQGAPE >gi|292820000|gb|ACYT02000074.1| GENE 46 52472 - 52987 578 171 aa, chain + ## HITS:1 COG:MT1879 KEGG:ns NR:ns ## COG: MT1879 COG0789 # Protein_GI_number: 15841300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 6 167 54 220 225 194 62.0 5e-50 MLFGDPLEGLDTDEMGYRGPVACSAAGITYRQLDYWARTGLLQPSIRAARGSGSQRLYSF RDILVLKVVKKLLDAGVSLQQVRVAVSSLQNRGVDDLASITLMSDGASVYECTSTDEVID LLQGGQGVFGIAVGRVWREVEGSLAELPLERSEPAFVDELAERRRSKLSAS >gi|292820000|gb|ACYT02000074.1| GENE 47 53070 - 54584 1559 504 aa, chain - ## HITS:1 COG:Cgl2327 KEGG:ns NR:ns ## COG: Cgl2327 COG0443 # Protein_GI_number: 19553577 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Corynebacterium glutamicum # 1 491 1 475 484 434 48.0 1e-121 MRLGVDFGTTTTAIAIVDRGNYPIVSFVNNHDDTVDFVPSIIALDGDRLVYGFDAEDAAR EGAPHLRSFKRLLSDPSVTDTSTLRLGNHSISILDALTGFLSYVVRQLRTNSSIASLPDS EPLEALVGIPAHAWSAQRFLTLEAFRRAGWDVLAMVNEPSAAGFEYTHRHAGTLNSKRTA ILVYDLGGGTFDASIVSATGTLHEVKGSRGLNMVGGDDFDVALATRLAAAAGTDSGKLGD EAWERLIEDSRDAKETLSPSTKFITVPVDGQPVTIPVTDFYEAATPLVEATIEAMEPLLV PDASGVGQLGGDIAGLYVVGGGSQLPLVARVLRSRFGRRVHRSPHTAASTAIGLAIGADP EAAYTVREQLSRGVGVFREREAGSFISFDTLLEPNTELAPGETLTIKRRYRAAHNIGYFR FVEYSSFDEAGVPRGDLQPYGEVIVPFDHSLRRSDIDLSVVPVIRTEDGPLIEESYIVDE NGMVTVEITDLEAAYTVTRPLGRR >gi|292820000|gb|ACYT02000074.1| GENE 48 54618 - 55361 777 247 aa, chain - ## HITS:1 COG:no KEGG:Caci_1712 NR:ns ## KEGG: Caci_1712 # Name: not_defined # Def: hypothetical protein # Organism: C.acidiphila # Pathway: not_defined # 9 227 46 271 324 110 34.0 3e-23 MTTDHDARSQRPPAIRETIVLALACLSYSILSFLAKAPESVAVAHAHDVAAFESRFGLFI EGHANAWLTTHPLLASLASTQYAISFFAMTGFAMIVLWLKAPTHYRGARWTLVIMTIGAL ITYWTYPLAPPRLVPEFGFVDAVAEHTSAYSQLFGTLANPYGAMPSMHTGWSVWVAVMLG TYVWRSWWARLILAVHPVLTIVTIIATANHYVVDAIAGCAYFLLAWLFVTIANRALPGNV RTPGETS >gi|292820000|gb|ACYT02000074.1| GENE 49 55525 - 55890 602 121 aa, chain + ## HITS:1 COG:no KEGG:Sked_18450 NR:ns ## KEGG: Sked_18450 # Name: not_defined # Def: hypothetical protein # Organism: S.keddieii # Pathway: not_defined # 1 113 1 111 114 122 56.0 4e-27 MADRALRGMQIGAKSLESEDGVVFADRFIVRYACPNGHEFEVTLSSEATAPATWECKCGQ TAELIGETVEDEENKPVKPQRTHWDMLLERRSIEELEVVLTEQLTAYREGRLRPEGSYRK G >gi|292820000|gb|ACYT02000074.1| GENE 50 55887 - 56672 619 261 aa, chain - ## HITS:1 COG:Cgl1444 KEGG:ns NR:ns ## COG: Cgl1444 COG0463 # Protein_GI_number: 19552694 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Corynebacterium glutamicum # 16 257 10 248 270 198 45.0 8e-51 MTESVPSSPSPSGDHTLIVIPTYNEMSTLPTILDDIWAHVPGAHVLIVDDSSPDGTGEWV DNRREGEDRLHVLHRPAKSGLATAYVDGMGWGIGHGYPFILQMDADGSHRPVDLPKLLSR MAGPDRPDLVIGSRWVPGGAINGWSAKRVALSKAGNYYVRFCLGTPVRDATAGLRLHRAS FLSEHEVLGRVATTGFGFQVEMTELERSLGAVIAEVPITFDERMAGESKLDSSIFVEELV MVTKGGLSRLAQAARRIMPKR >gi|292820000|gb|ACYT02000074.1| GENE 51 56692 - 58293 1115 533 aa, chain - ## HITS:1 COG:Cgl1445 KEGG:ns NR:ns ## COG: Cgl1445 COG0815 # Protein_GI_number: 19552695 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Corynebacterium glutamicum # 15 530 9 525 545 183 28.0 7e-46 MRRASFAHVCGDSIIAAIAGLALYASFPPVGWWWLSVPALALFLSRIDEARAPRALTVTF VFGMSFWLPLIDWIPLAVDTTPPWFVLALVQTFFFMGWVVFTRWTQLWRWARGPLVQALL FALTWTGVDAARSRWPWSGFPWGSVALPQVDSPLGHLAPYGGATLITAVVVFLAVLVRRA FAARDAAVLREHWFSRPALALIIAAAYVAPLAVSLPNQAENGMLRVGVVQGDIALPGAEA YSREGEVTDNNMRASLDLASSPQVADRPIDIALWGEGSVDRDPLAFPAIGQAVDRAATAL DAPILIGYTNLNERDRVKNWLAVWEPGTGMDESVRYSKHVPVPFGEFIPFRDVIALFATE VAQASKDMEAGEEPPLMTIQARDGRSVPLAVGICFEAAYPLVIGDGVARGGQAIVVPSNN YHFRSSGESAQQGQLLRMRAMEYSRSAVQASTTGHSYVIRPDGSILSSTGTEEAATLAAD IPLRTSQTLTALAGERIPGAVMVATLIIAILTTTTVIGQGISASARARRASGH >gi|292820000|gb|ACYT02000074.1| GENE 52 58328 - 61096 2437 922 aa, chain - ## HITS:1 COG:MT2153 KEGG:ns NR:ns ## COG: MT2153 COG4581 # Protein_GI_number: 15841583 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Mycobacterium tuberculosis CDC1551 # 50 918 9 902 906 602 43.0 1e-172 MSAKRRRHRTRDTDHVTQREEEVGLGVGSAAQRYAAYKAEAQAASSLRARWVSTLSFTPD PFQIQALDAVEAGSSVLVAAPTGAGKTIVGQFGAYVALEQGMRAFYTTPIKALSNQKYLE LCDLYGADNVGLATGDTSVNSGAPVVVMTTEVLRNMIYAGASLNDLGVVILDEVHYLADK MRGPVWEEVIIHLPAHVAIIALSATVSNAEEFGAWIREVRSTCEIIVSEKRPVPLYQHMI VGEDIFDLYAPAGKGKLNPELVAATRDSGMRGGRGSRSWNREVRVRRESRPSTLISLDRA RLLPAITFIFSRAGCEDAVRQILSTRITLTTRSEAAEIESYVDEVIALLPPEDAIVLGAE AWKRGLMRGIAAHHAGMLPLMKESVEHLFSRGLVKMVYATETLALGINMPARTVVIESLT KWNGSAHVSLSAGEYTQLSGRAGRRGIDTEGHAVVSHRGGVAPEEVAALASKRTYPLISA FTPTYNMVVNLLARSTRAQTRKVLESSFAQYQADSAVVVLASRLTELEAQRDATAEDLSC SHGDVREYLTLRDQLGQAEKSGARARKREARDELRRLLSGVRPGDVLALTRGRKTRLCVV GAKATSASGRAQVSVIGEDATWRALAPEDVRGAIAVVGHMSIPGGSALRRTKERTRIAGE LRSGAAKGIYEVPAEPTQASDPVSALRVAMRQHPVHRCPHREEHARAGAQWARLAREIDR LRSSIDSQTGSVAAQFDRVCAVLERLGFLAGDEVTDAGQRLRRIFGERDLVVAMSMNEGT WNELDEAELASMVSALVYDSRSDDDAQQLAPAGVGIRLQEAWHESLATLERVHRVEKACG CDLTPSLDAGLMAATLAWAHGSTLATAIDATPIQAGDFVRWMRQVMDCLGQIASATSSGE LVRKAEAAKDRIGRGIVAWSTI >gi|292820000|gb|ACYT02000074.1| GENE 53 61093 - 62031 612 312 aa, chain - ## HITS:1 COG:no KEGG:Bcav_2058 NR:ns ## KEGG: Bcav_2058 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 1 312 1 326 336 90 29.0 9e-17 MPENVQLAVVRLASMVAWMSEHPGANVDEIAAHFHRTRRQVRRDIEYLASVGDSLPGASF ELDWELYEQEQRVSLRSTLGASAPLRLSTLEAQALLIGLSAITPLLGMDLAAHVPHAALV VCALGGLKEADAEQRVEAIPSLASSSESLETLRDALLREERVSFTYVSASDVRTRRIVDP WSLEASASGWLLRGWCTRAGEARSFAVVSISDVRGEGPRVEEPRRMRHDAPTWTLDVDRD ARWIADEYDGHIVAELDGGGARITLPVWNEQWGMSLLIDIAPHLRAATPDMRDEAARRAR SVLSIWTREDAS >gi|292820000|gb|ACYT02000074.1| GENE 54 62024 - 62956 558 310 aa, chain - ## HITS:1 COG:ML1329 KEGG:ns NR:ns ## COG: ML1329 COG2378 # Protein_GI_number: 15827690 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Mycobacterium leprae # 10 306 8 329 331 102 30.0 1e-21 MSTAVNANVRVLELFVELLGARPGRTKAQLRALPGYQGLADDAFETQFQRDKDALRDAGA HMTIHSGERYSIAWDSFAPGIEVTSTDRALMSLAARAWDSSEFFAEAIDAKAAAASSDDV SAPTIRLGLTGLGAATVLAQAIRERRVVCFEYPGSRELTERSVEPWALSVQGRALYLWGW DLDRGSERTFRVSRIRSQISFIGEPGDASLPPEGAVFPRVSSFVSPVVDVRGDSTARTLL HGYEAGAASEEHGSPRHGWERVALEGAELGTWMGRLLPLASDVVVVSPESLCDAMLTRLR AAAKWGEHDA >gi|292820000|gb|ACYT02000074.1| GENE 55 63006 - 64049 878 347 aa, chain - ## HITS:1 COG:DR0268 KEGG:ns NR:ns ## COG: DR0268 COG0715 # Protein_GI_number: 15805299 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Deinococcus radiodurans # 40 334 28 313 321 117 32.0 3e-26 MKLSTIVRAAVVGACASLVLAACTPGDKAAQSGTHGDSEVTIGLTYIPNIQFSPVYVADA QGTYTDNGVVPTIRHHGSHEGFFTALLAGEEDIVIASGDEAAVAASQGLDIVSIGQYYAS YPGAVIVPEDSDIHSLADLEGKTVGIPGEHGANYYATRAAMQEAGLSESDVTISPIGYTQ QAALASGQVDAVVGFTNNDAVQMRLAGLQIREITLNPTSTPLVSASFITTHKWAQEHPEQ ARAVVAATTKAMNDIAAAPQIALDATKQWDTSLTDEATLSAANAVLAATVPLWLGDTGTA TGAQDLATWAQMVTFLDSLGELEGSVDATTLATNDYVSANDSASPQS >gi|292820000|gb|ACYT02000074.1| GENE 56 64061 - 64834 604 257 aa, chain - ## HITS:1 COG:AGl1202 KEGG:ns NR:ns ## COG: AGl1202 COG0600 # Protein_GI_number: 15890722 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 249 18 250 265 105 29.0 9e-23 MATRNKPRGALTVAAPVIFLAVLLAGWWLSTTLTGIEAWRLPNPMSVISKGSVILALPST WHKVQVTGAEAVAGCLLGSVVALPSAYVIYRSRILAAAVEPFLGATQALPAIAIAPILVL WVGYGFMSIVVLCALMVFFPILVSTVVGLRHIDRELLEAAALDGATGWTMALYMELPLAA PAILGGLRNGFALSVTGAVVGEMVMGGSGLGQVLTQMRNNVDTAGMFVIIIILCTMATLL YTIVYRIERSKRYEITQ >gi|292820000|gb|ACYT02000074.1| GENE 57 65128 - 65790 772 220 aa, chain - ## HITS:1 COG:Rv1408 KEGG:ns NR:ns ## COG: Rv1408 COG0036 # Protein_GI_number: 15608546 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Mycobacterium tuberculosis H37Rv # 5 219 13 227 232 208 52.0 7e-54 MNATISPSILNCDIANLRGELTKIAGADIAHVDVMDNHFVPNLSWGLPVAEAVVKSGILP VDAHLMIEDPDRWAPQYAEVGCESVTFHAEAAAAPLRLARELHRIGARTGLALKPATDIA PFVDILNEFDMILIMTVEPGFGGQSFIEQMIPKIERTRTAINAAGLQVSIQVDGGISRAT IERAAAAGADNFVAGSAVFRADDAHREVEALRELANAHSH >gi|292820000|gb|ACYT02000074.1| GENE 58 65801 - 67273 1143 490 aa, chain - ## HITS:1 COG:Cgl1561 KEGG:ns NR:ns ## COG: Cgl1561 COG0144 # Protein_GI_number: 19552811 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Corynebacterium glutamicum # 17 490 74 511 511 312 42.0 1e-84 MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFANIILPKALRQARRDGHFSDRDAA FTSELVHGTLRAIGRLDWVISRHIDRPLADLDPRALVVLRMGTHQLLDMRVPDHAAVSAT VDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIADEDQALGVRYSHPAWMVTAFH DALKAHGYPEEELLDVLEADNEVPTVTLVARPSLMSVDELADEAEDILDTRVALGAVSPY AVLLESGDPARLPSIRDGRAGAQDEGSQLAALIAASAPLEGDNDERWLDLCAGPGGKAAL LAGLAAGVGARVTANEVHPHRARLVERTTRQFDSIEVVSGDGRTFGGGQSAWPLGSFDRV VVDAPCSGMGSMRRRPESRWNRTPADVEELTVLQRELLDRAVALTRPGGVLTYITCSPHA AETREQVERLLKAGEVELLDTVALANECAPQALDVPASAGVIKGFSGRTLQLWDHRFGTD LMFVACLRRR >gi|292820000|gb|ACYT02000074.1| GENE 59 67270 - 68214 404 314 aa, chain - ## HITS:1 COG:Cgl1562 KEGG:ns NR:ns ## COG: Cgl1562 COG0223 # Protein_GI_number: 19552812 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Corynebacterium glutamicum # 1 306 1 314 315 213 43.0 3e-55 MRIIFAGTPEAAVPTLRALLSSSHEVALVITRPPARRGRRKTMYPSPVAEVATEFGVELL ETTTLKTPDIAQRIEDVQADLGVVVAYGGLVPPNVLAMPVHGWVNLHFSDLPRWRGAAPV QWAIREGDATTASCVFNLEEGLDTGNVYSRVEVPIGHESAGELLSSMAEAGAGQVLGVVD ALAAGSSTATPQPSEGVTHARRLEHVDGYVSFTHDAGYEDRVIRSVTPNPGAYTVLPGGA RMKLDKATPVDRDDLAPGQLEVTKKQVTVGCTSGALVLGKVAPAGKSWMDAAAWARGARP SEDLRLGGELEGER >gi|292820000|gb|ACYT02000074.1| GENE 60 68249 - 70135 337 628 aa, chain - ## HITS:1 COG:Rv1402 KEGG:ns NR:ns ## COG: Rv1402 COG1198 # Protein_GI_number: 15608540 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Mycobacterium tuberculosis H37Rv # 1 624 7 651 655 286 36.0 1e-76 MDRPLDYVVPDRFIDEAEVGRAVRVRFSGTRVDGWIVERTRRDVLDEAAQIESVSSALPV LTPALYEAARRIATRFLATTSQVLSLAIPPRHARGEKTVVQAHDSMWPSVEAPTVSEGWA SYRAGDALLHRLAAGESPRAVVTALRPRMRACLSDAVAATVSSGRSAIIVAATGEDAARY ARALEEDLGVPVAVTGGEVAPEERYRIHAAATLGRLPIVVGTRSAAWVPCAKLGLIVICD DGDDRLRERRFPRCDVLDIAVQRCAVEDAGLLVASFARSVKAQALVRSGWAASLDPVPGA LRDATPRVHLHGATEAEREGASGRMRIPPAALRMIRQGLREGPVLIQVAVSGYWPTVVCR RCGERARCRHCSGPLAVNSGGDVTCSWCARTSQSWRCPHCSGTELRAARVGSTRTAEEIA RNLPDTSVLESSAAHRINRQLPTRPTVVVATPGAEPHVDGGYAAAIILDAHALAGRAELW APEEAARRWLNALSLVRPGHPGLVVGMIPDALGQALVRWAPTDYADRLLDEREALGFFPA TTMVALDGPAAQVRQVAEQVIRDGGADLVGTVVRPATREGEENEVRTLVRSPLAGATSML AVLTEIRRSRSARKLPLVKMSVNPPELF >gi|292820000|gb|ACYT02000074.1| GENE 61 70274 - 70909 653 211 aa, chain - ## HITS:1 COG:ML1666 KEGG:ns NR:ns ## COG: ML1666 COG4243 # Protein_GI_number: 15827882 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium leprae # 27 150 26 149 214 76 35.0 4e-14 MSEAMEAEDYLPSYETEDARRAWRRRTSLEMIISGFIGLVTSFVLSIEAWQLAANSSARF GCDISSVLSCSAVAQTWQARILGFPNAFLGIFFEAVVLAISVAIFAGVKFPRWYMLGTNL LYTIALFFAFWLFGQSYFIIQVLCPWCLLITLTTTLVFGGITRINIRDGVIPAPEGLRRI VAQGLDWALWGLIVFGVLAMVVAKYGLKLLG >gi|292820000|gb|ACYT02000074.1| GENE 62 70906 - 72093 1446 395 aa, chain - ## HITS:1 COG:Cgl1565 KEGG:ns NR:ns ## COG: Cgl1565 COG0192 # Protein_GI_number: 19552815 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Corynebacterium glutamicum # 4 394 8 404 407 487 63.0 1e-137 MSQQLFSSESVTEGHPDKVCDRVSDAILDALLAADPRSRVAVETMAATGLIHIAGEVTTE AYVEIPEIVRREILSIGYDSSRVGFDGASCGVSVSLDGQSPDIAGGVDEALEVRGTQGGD PRDRLGAGDQGIMFGYASSDTPDLMPAPIWLAHRLAKRLTDVRKQGIVEGLRPDGKTQVT LAYADGRPVGIDTVVVSTQHDEALSQSTITDAVRDYVINPVIEESGLALASGSMTTLINP SGRFVLGGPAADAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSATYAARWVAKNVV AAGIAQRCEIQLAYAIGRARPIGLYVDTFGTTSVPEDRIADAIREVFDLRPLGMIEDLDL LRPIYRETAAYGHFGRDQFPWEATNRVEQLKAALA >gi|292820000|gb|ACYT02000074.1| GENE 63 72090 - 73319 698 409 aa, chain - ## HITS:1 COG:ML0543 KEGG:ns NR:ns ## COG: ML0543 COG0452 # Protein_GI_number: 15827199 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Mycobacterium leprae # 4 407 6 413 419 275 44.0 8e-74 MATIVVGVTGGVAAFKAPIVVRECQRAGHDVYVAATRASLDFVGRSTWEGITSRPVAVDI AGEGRAEHVELARVADLIIVVPATANSLARLAAGFADDMVSLTVLASDAPVVVAPAMHSN MWLAPATQANVQALRDRGFHVIDPASGALGSGDRGVGRLPEPEEIARVALGVLAARDQAS NALAGRTVVVTAGGTREPVDPVRFLGNKSSGRQGLAIASAGARAGASVRVIAANIESALL ATLPTAVQVTRVGSALQMREATIAQVADADALVMTAAVADFRPEAASESKIKKDLSNEEA PTIRLVRNPDILAEIGHSDQRPPLVVGFAAETGTDKEILAYGADKAARKGADFICLNRVG ESVGFGDVPNDIRLLDARGNIAGRYVGSKDEVAAGLVGHMASFLDNLKR >gi|292820000|gb|ACYT02000074.1| GENE 64 73321 - 73587 444 88 aa, chain - ## HITS:1 COG:Cgl1567 KEGG:ns NR:ns ## COG: Cgl1567 COG1758 # Protein_GI_number: 19552817 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Corynebacterium glutamicum # 8 83 18 93 95 98 65.0 2e-21 MSGIVAQPVGITSPPIDDLLEHVDSKYALVIFAAKRARQINSYNLQLQQNMIQFVGPVVD VQPDEKPLAVSLREINEGLLSLEANPEA >gi|292820000|gb|ACYT02000074.1| GENE 65 73624 - 74181 523 185 aa, chain - ## HITS:1 COG:ML0541 KEGG:ns NR:ns ## COG: ML0541 COG0194 # Protein_GI_number: 15827197 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Mycobacterium leprae # 3 182 22 202 210 181 55.0 6e-46 MTKAQLTVLAGPTAVGKGTVVAALTKRYPTLNVSVSATTRDPRPGELNGVHYYFVSAQEF DAMIERGDMLEWALVHGNNKYGTPRGPVDEALAAGKPVLLEIDLAGARQVRTNRPDAQFI FLAPPSWEELERRLIGRGTEGPEEQARRLATARVELEAASEFDHVVINDDVERAVDELAR LIGLE >gi|292820000|gb|ACYT02000074.1| GENE 66 74209 - 74520 207 103 aa, chain - ## HITS:1 COG:no KEGG:Jden_1319 NR:ns ## KEGG: Jden_1319 # Name: not_defined # Def: hypothetical protein # Organism: J.denitrificans # Pathway: not_defined # 1 103 7 109 109 94 62.0 1e-18 MALPDLTPEQRAQALEKATQARRRRAEVKNALKARSMNLSEVLELADSDEAVAKMKVVSL LESLPRVGTNTAAVLMDEYKIAQSRRVRGLGPVQRKALVERFG >gi|292820000|gb|ACYT02000074.1| GENE 67 74622 - 75488 342 288 aa, chain - ## HITS:1 COG:Cgl1570 KEGG:ns NR:ns ## COG: Cgl1570 COG0284 # Protein_GI_number: 19552820 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Corynebacterium glutamicum # 14 279 3 264 278 211 47.0 1e-54 MTTAAITPGAAAGFGDRLYAAMRAYGPVCVGIDPHAGLLREWGLDDDASGVREFSLRVIE ALGGRVAAFKPQAAFFERHGSRGVAVLEEVIAACREVGTLCIVDAKRGDIGSTMDGYAQA FLSDSSPLAGDAVTLSPYLGVGSLTPALELARQTRRGVFVLALTSNPEGASVQHARGEDG TSVAGRVVSQLADFNGQCDQQHLGPVGIVVGATVGDAVKRLGIDLPSLNGAFLAPGLGAQ GAGPAQVREVFAGAEDAVLASSSRAILRAGPSIAGLRDAYRATVDSLQ >gi|292820000|gb|ACYT02000074.1| GENE 68 75485 - 78784 4085 1099 aa, chain - ## HITS:1 COG:Cgl1571 KEGG:ns NR:ns ## COG: Cgl1571 COG0458 # Protein_GI_number: 19552821 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Corynebacterium glutamicum # 1 1091 1 1108 1113 1286 62.0 0 MPRRNDLSSVLVIGSGPIVIGQACEFDYSGTQACRVLKEEGLRVILVNSNPATIMTDPGI ADATYVEPITPEVVASIIEKERPDALLPTLGGQTALNTAVALSEMGVLERFNVELIGASI DAIRAGEDREEFKEIVERSGAEVARSFIAHTMEECHAAAAELGYPLVVRPSFTMGGLGSG FAYTPDDLERIAGQGLAASITTEVLLEESILGWKEYELELMRDKADNVVVVCSIENVDPV GVHTGDSITVAPALTLTDREMQRLRDIGIAVIRAVGVDTGGCNIQFAIHPETGRIIVIEM NPRVSRSSALASKATGFPIAKIAARLATGYTLDEIPNDITGSTPASFEPTLDYVVVKVPR FTFEKFPAADPTLTTSMKAVGEAMAIGRSYTEALQKALRSIDKGGVQFHWDGDAPTPEET RALVEAAAVGTEGRLVQVQQAIRGGATLEELFESTKIDPWFLDQLFLLDEVATRIREAEA LTGDVLAEAKRHGFSDRQIAAMRGLSEDTVREVRGAFGIHPVFKTVDTCAAEFAARTPYH YSTYDQENEVRPRGREAVIILGAGPNRIGQGIEFDYSCVHAAMSLREHYETVMVNCNPET VSTDYDISDRLYFEPLTLEDVLEIYRAECAAGPVKGMIVQLGGQTPLSLAADLERAGVPI LGTSPRAIDLAEDREEFGKVLEAAQCPAPAHDTANTPEQVIAVAEQVGYPVLVRPSFVLG GRGMAIINDEPALREYLASHDSELLFSRGPLLIDRFLDAAIEIDVDALYDGEELFMGAIM EHIEEAGIHSGDSSCVLPPMTLSARELERITASTEAIARGVGVRGLINIQFALLSDTLYV IEANPRASRTVPFASKATGVQLAKAAALIQVGATIASLREEGLLPTHDAREIHDGGSIAV KAAVLPFKRFRTAGGEIVDTVLGPEMRSTGEVMGIDRDFPTAFAKSQLGASTDMPTSGTV FISIADTDKRAIVLPAARMHEMGFNILATSGTASVLRRNGIEAQAVRKSSEGRGDGGEPT VVDLINDGSIDMVVNTPQRSAPRNDGYQIRAAAASQDRPAVTTLQAFNAMVQAIEVRMRG AYSVRSLQEWDSIRSEETR >gi|292820000|gb|ACYT02000074.1| GENE 69 78784 - 79971 1445 395 aa, chain - ## HITS:1 COG:ML0535 KEGG:ns NR:ns ## COG: ML0535 COG0505 # Protein_GI_number: 15827191 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Mycobacterium leprae # 7 392 4 375 375 414 58.0 1e-115 MTTSDIALLVLEDGTVFKGRAWGAKGRTLGEIVFSTGMTGYQETLTDPSYHRQIVVMTAP HIGNTGVNDEDPESSRIWVAGFVVRDAARRASNWRSRRELEDELISQGIVGIADVDTRAI TRHIRERGAMRAGIFSGDALPVGAQYLGDEAVASLVRIVAESPAMSGAALAAEVSTDETY VVEPLGDFEGKEPIARVVAVDLGIKSRTPYHLAARGARVYVVPSTASFADIEALKPDGVF FSNGPGDPSTADREIGVLRAVLDAGIPYFGICFGHQLFGRALGYGTYKLDYGHRGINQPV KEVATGRVEITAHNHGFAVDAPVGEPSVAPFESGRYGRVEVSHVGLNDGVVEGLRALDIP AFSVQYHPEAAAGPHDGELLFDRFISLMTAAKETH >gi|292820000|gb|ACYT02000074.1| GENE 70 79968 - 81287 1644 439 aa, chain - ## HITS:1 COG:Cgl1573 KEGG:ns NR:ns ## COG: Cgl1573 COG0044 # Protein_GI_number: 19552823 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Corynebacterium glutamicum # 8 431 22 442 447 401 50.0 1e-111 MTEQTRDILITGASLLGGEPTDIALSAGTIVAIGADARNAVRDPRIIDAEGLIALPGLVD IHTHLRQPGGEDAETVFTGTRAAAVGGYTAVHAMANTTPTQDTAAIVDQVLRLGEEADWV EVRPVGAVTKGLEGKQLASLGSMARSRSKVRVFSDDGKCVSDPVLMRRALEYVKGFGGVI AQHSQDPALTEGAQMNESTLSGELGLSGWPAVAEEAIIARDILLAKHVGSRLHVCHLSTA GSVDLVRWGKAQGVDITAEATPHHLLLTEQLAATYDPIYKVNPPLRRAEDVEAVREGLAD GTIDCIGTDHAPHPLEMKDCEWQAGAFGMTGLETALPIIIETMVNTGRMDWADVARVMST VPAQIGRVTSQGQGLVVGGPAHVTLVDATVRVTVDPAKQWTRSANCPFRGMELPGQVRYT IYNGVPTVVDATPIAKEDR >gi|292820000|gb|ACYT02000074.1| GENE 71 81280 - 82266 1044 328 aa, chain - ## HITS:1 COG:Cgl1574 KEGG:ns NR:ns ## COG: Cgl1574 COG0540 # Protein_GI_number: 19552824 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Corynebacterium glutamicum # 3 321 1 306 312 311 54.0 1e-84 MSLSHLISIRDLTREEAILILDTAEQMAATQRHGVKKLPTLQGKTVVNLFFEDSTRTRIS FETAAKRLSADVINFQSRGSSVSKGESLKDTALTLEAMSADAVIVRHSSSGAAHRLAHAG WMNLPVLNAGDGTHQHPTQALLDAMTLRRHYAPSLGENGTTAPGSGLDGAHVVIVGDVLH SRVARSNVDLLTLLGARVTLVAPPTLLPIGVETWSCATSYNFDEALATHPDAVMMLRVQR ERMSSAGGGFFPSPGAYHAEYGLTPARFATLSPNAVVMHPGPMNRGLEICAEAADSDQSV IVEQVSNGVCIRMAALYLLLASEGHSND >gi|292820000|gb|ACYT02000074.1| GENE 72 82270 - 82833 401 187 aa, chain - ## HITS:1 COG:Cgl1575 KEGG:ns NR:ns ## COG: Cgl1575 COG2065 # Protein_GI_number: 19552825 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Corynebacterium glutamicum # 6 185 2 185 192 172 52.0 4e-43 MAEVHADRASRGKEVLGVGDVARSLTRIAYEIVERNGGSDNLVIAGIPTRGATLARRLVN RIREVSGTYAELAIIDTTMYRDDLASQPLRAPKETLVPRTGINGKTVVLVDDVLYTGRTI KAALDALTRIGRPGAVQLAVLVDRGHRELPIRPDYVGKNLPTSRDEIVTILLDETDGRDG VLLGKGL >gi|292820000|gb|ACYT02000074.1| GENE 73 82965 - 84002 289 345 aa, chain + ## HITS:1 COG:BS_yjmH KEGG:ns NR:ns ## COG: BS_yjmH COG1609 # Protein_GI_number: 16078302 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 30 343 2 327 333 114 28.0 2e-25 MSQQSKQSKPGQRTGVTPLAHDRQMSGQRVTLDDIALAAGTSIATVSRALGGSPRVAAPT RERIEKVAEQLGYRANIAASLLASARPQILGLVCSLSQELHVRYRAEALRYAEDRGFRVI VESIDTSRDVDRAWESVLQLRAQAVIAVDSTCISTRFPNTPAVLIGQRAPRRDIDLVTSS NERGMGQAIALLAQRGSRRIAFLEGPPGPSARARKAAFTQACITHEVDALTVPGGDNVDA GFLAVRAGLPAGVDALVCYNDQCAHGAILALLGDGLVPGRDMLVVGCDNSAIASSRALSL TSIDRAPSRVASLAVDQAIARALSDGGSPARQRVETELVVRASTG >gi|292820000|gb|ACYT02000074.1| GENE 74 84052 - 84828 460 258 aa, chain - ## HITS:1 COG:lin1054 KEGG:ns NR:ns ## COG: lin1054 COG0483 # Protein_GI_number: 16800123 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Listeria innocua # 30 251 29 253 257 175 40.0 1e-43 MTVDMEHLLNAAIEAVRRGMNIALHPPVELDVHTKANRNDLVTAVDKAIEADIASHLHAV TGLPLLGEEGHAVDSFAGLVWVLDPIDGTMNYVETHRDYAVSLALCEDGTPVLGVVADVV AGRIYHAIRGQGAWVDGVPLTQATDVSTYRDAIIITDIKEILALPRLARALQDSRGHRRY GSAALECVEVAVGRAGAFVHMWVSPWDIAAATLIATECGALATRLDGTPLDVRYKGSILL GTPNVHATLVECLMSSVQ >gi|292820000|gb|ACYT02000074.1| GENE 75 84831 - 86162 1526 443 aa, chain - ## HITS:1 COG:SA0214 KEGG:ns NR:ns ## COG: SA0214 COG2271 # Protein_GI_number: 15925925 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Staphylococcus aureus N315 # 3 432 27 456 459 416 49.0 1e-116 MEFLKTYAVLVIVYGGFYLLRTNFKSAQPFLVEQVGLTTTQLGTIGFAFSLTYGFGGLIL GFFIDGKNTKKVISALLLASGVTSVLIGLVLAWFHSPYGWMILLWSLNGLFQAPGGPCCN STMNRWTPRALRGRFIGWWNASHNVGAMVAGVLALWGANTLFNGSVIGMFIVPAVICIPI GIWGWFFGKDDPKEHGWNTPEAIFGEPESKADAVTSSVSKGRILLDYVVKNPAVWFLCIA NVAAYCVRIGIDNWNVLYTRQELGFSDYLAVNTTIALELGGLAGSLLWGYFSDKMGGRRA LSAAIGMGAVVIPLFVYAHATTALVVYGALFMIGFLIFGPVTLIGICVIGFAPKTATVVV NAVPRAFGYVFGDSMAKVLLGRIADPTKDGVTVLGLHLHGWSSTFTVLFASAAVGLACLI MVAFFEERNLRADREFSEAKEES >gi|292820000|gb|ACYT02000074.1| GENE 76 86128 - 86361 143 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293192829|ref|ZP_06609724.1| ## NR: gi|293192829|ref|ZP_06609724.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 34 77 1 44 44 88 100.0 2e-16 MTSTAYVLRNSMSHFVRCYSSVRDVGGDVRISKMWDRCVIAVSPVLLVYAGDDGDGAIGV TPPEYKRLHSVSRVACA >gi|292820000|gb|ACYT02000074.1| GENE 77 86358 - 86558 136 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGVGYELVSNGSMYEHLVGIEGDACRILRGPLVSDVSLSPCDGELYPVGVSWYTPTGYL GFVSDT >gi|292820000|gb|ACYT02000074.1| GENE 78 86651 - 86947 436 98 aa, chain + ## HITS:1 COG:AGl963 KEGG:ns NR:ns ## COG: AGl963 COG4309 # Protein_GI_number: 15890598 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 28 95 58 126 149 57 43.0 7e-09 MTIEQLPHPEVHGGGCGCGEHDVAEPTIDATAIPHRLRHAAVLGAAQSMNAGESFIIRAP HLPRPLLAQIAQLPGEWTFEVLTDGPEHWDVKATRTAL >gi|292820000|gb|ACYT02000074.1| GENE 79 87076 - 88404 813 442 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508772|ref|ZP_02044414.1| ## NR: gi|154508772|ref|ZP_02044414.1| hypothetical protein ACTODO_01281 [Actinomyces odontolyticus ATCC 17982] # 1 442 1 442 442 844 99.0 0 MEHGIRRISNALCASASAAALVVCCVSCAHSTTEDVGYLEGFTTSGAFLVVRLSSQGIRN GLPPDTANGYLVAFQQDGSMSAAWTQGLLSSEMTWNGPVLSVGDSAYEYLITDDGASAFP RTVDGGHEVGRIVSSTDGSVLSFYVEGPVQRAYNIDSGGIRDRSENQEFYLTNGECGGRV LSSTSTRITPILQESASEFAASRPPSAAESDGAQSDSAESGAPDGYDILAQVYPHDGDLP PVLAVAPRETRIEVFRTDLWCADDVFYHLMYLDSPEFVTRDSDGDEGRTTIFLNEWDLGT GERRIRMVTDEEGAPFAVGYQETAFFGQYDEQFYTFATPYGHVFKLDAQSARVTQLATLP LAKPELRSARFYVRDGYAYAIEPSEDGGAPPQFSACRLSDGRCSTPKPLEGLEKKMRGSL LGGEQVLQSFAVRPGYIPDIDS >gi|292820000|gb|ACYT02000074.1| GENE 80 88420 - 88920 283 166 aa, chain - ## HITS:1 COG:BS_yycO KEGG:ns NR:ns ## COG: BS_yycO COG3863 # Protein_GI_number: 16081080 # Func_class: S Function unknown # Function: Uncharacterized distant relative of cell wall-associated hydrolases # Organism: Bacillus subtilis # 15 160 92 238 245 65 32.0 5e-11 MQDMQIGGGGADLASIDGTAGATYLLPKSDYVGDVYWSPGVPHYGHVGIFSGRDWIVEAA GKPGGSNWDWVWNVTVPSGTVLFYFHTSQATQDAAAAYAYNHLLHYPYNWRFWSNKEYNI KSLNCSQLVWYAYYYGAGLDVDGDGGNAVFPSDIRDSSLSYIYRRL >gi|292820000|gb|ACYT02000074.1| GENE 81 89614 - 89718 66 34 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508770|ref|ZP_02044412.1| ## NR: gi|154508770|ref|ZP_02044412.1| hypothetical protein ACTODO_01279 [Actinomyces odontolyticus ATCC 17982] # 1 34 21 54 102 67 100.0 2e-10 MTVEIRVTGQDGSYKHYVVAREPVADPESWMGIE Prediction of potential genes in microbial genomes Time: Tue May 17 07:15:45 2011 Seq name: gi|292819940|gb|ACYT02000075.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont2.9, whole genome shotgun sequence Length of sequence - 62915 bp Number of predicted genes - 60, with homology - 58 Number of transcription units - 24, operones - 12 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 7 - 192 87 ## gi|154508769|ref|ZP_02044411.1| hypothetical protein ACTODO_01278 2 1 Op 2 . - CDS 281 - 628 310 ## gi|154508768|ref|ZP_02044410.1| hypothetical protein ACTODO_01277 3 2 Op 1 6/0.000 - CDS 846 - 1724 625 ## COG0781 Transcription termination factor 4 2 Op 2 . - CDS 1808 - 2371 863 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 5 2 Op 3 . - CDS 2396 - 2920 378 ## Tfu_1091 shikimate kinase (EC:2.7.1.71) 6 2 Op 4 20/0.000 - CDS 2917 - 3999 986 ## COG0337 3-dehydroquinate synthetase 7 2 Op 5 7/0.000 - CDS 3996 - 4505 369 ## COG0703 Shikimate kinase 8 2 Op 6 . - CDS 4502 - 5713 795 ## COG0082 Chorismate synthase 9 2 Op 7 . - CDS 5774 - 6703 703 ## Bcav_2236 peptidylprolyl isomerase FKBP-type 10 3 Op 1 . - CDS 6811 - 8124 1090 ## Jden_1206 protein of unknown function DUF245 domain protein 11 3 Op 2 . - CDS 8198 - 8374 250 ## gi|154508759|ref|ZP_02044401.1| hypothetical protein ACTODO_01268 12 3 Op 3 . - CDS 8400 - 9920 1565 ## Cfla_2003 protein of unknown function DUF245 domain protein 13 3 Op 4 1/0.125 - CDS 9917 - 11461 1542 ## COG0464 ATPases of the AAA+ class 14 3 Op 5 . - CDS 11454 - 12479 1051 ## COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferases - Prom 12504 - 12563 1.7 15 4 Op 1 . + CDS 12583 - 13437 573 ## COG2887 RecB family exonuclease 16 4 Op 2 . + CDS 13442 - 14374 480 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Term 14405 - 14456 21.1 17 5 Op 1 . - CDS 14480 - 14767 318 ## gi|293192901|ref|ZP_06609745.1| conserved hypothetical protein 18 5 Op 2 . - CDS 14801 - 15898 1435 ## COG1252 NADH dehydrogenase, FAD-containing subunit 19 5 Op 3 . - CDS 15970 - 16482 726 ## Arch_0917 protein of unknown function DUF2166 20 5 Op 4 . - CDS 16479 - 17162 583 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis - TRNA 17219 - 17308 53.3 # Leu GAG 0 0 - Term 17347 - 17383 -0.4 21 6 Tu 1 . - CDS 17387 - 17977 506 ## COG1846 Transcriptional regulators 22 7 Tu 1 . + CDS 17928 - 18641 582 ## COG0546 Predicted phosphatases 23 8 Tu 1 . - CDS 18638 - 21922 1323 ## COG0587 DNA polymerase III, alpha subunit 24 9 Tu 1 . + CDS 21943 - 23103 731 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 25 10 Op 1 . - CDS 23100 - 26231 1635 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 26 10 Op 2 . - CDS 26271 - 27485 135 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Term 27579 - 27624 2.0 27 11 Tu 1 . - CDS 27834 - 28316 -40 ## gi|154508743|ref|ZP_02044385.1| hypothetical protein ACTODO_01251 28 12 Op 1 . + CDS 28446 - 28973 558 ## COG1881 Phospholipid-binding protein 29 12 Op 2 . + CDS 28979 - 29440 457 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 29464 - 29509 0.7 - Term 29452 - 29497 8.9 30 13 Tu 1 . - CDS 29531 - 30079 249 ## gi|293192914|ref|ZP_06609758.1| hypothetical protein HMPREF0970_02113 + Prom 30106 - 30165 1.8 31 14 Op 1 30/0.000 + CDS 30235 - 31608 795 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 32 14 Op 2 . + CDS 31636 - 33342 2241 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 33355 - 33405 18.5 33 15 Tu 1 . - CDS 33426 - 34760 686 ## CJA_3295 putative serine/threonine protein kinase + Prom 34732 - 34791 2.4 34 16 Tu 1 . + CDS 34866 - 35558 640 ## RMDY18_07220 hypothetical protein + Term 35569 - 35605 8.9 35 17 Op 1 9/0.000 + CDS 35699 - 36634 1268 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Prom 36637 - 36696 2.0 36 17 Op 2 31/0.000 + CDS 36731 - 37675 1169 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 37 17 Op 3 34/0.000 + CDS 37683 - 38645 1148 ## COG0765 ABC-type amino acid transport system, permease component 38 17 Op 4 . + CDS 38642 - 39415 615 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 39430 - 39472 11.0 39 18 Tu 1 . - CDS 39498 - 41087 1422 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 40 19 Op 1 . + CDS 41137 - 41943 955 ## COG1738 Uncharacterized conserved protein 41 19 Op 2 . + CDS 41940 - 43265 1320 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 42 19 Op 3 . + CDS 43281 - 44177 919 ## COG2321 Predicted metalloprotease 43 19 Op 4 . + CDS 44229 - 45914 1172 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 45960 - 45998 6.0 - Term 45943 - 45989 10.0 44 20 Op 1 4/0.000 - CDS 46001 - 46432 668 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 45 20 Op 2 19/0.000 - CDS 46443 - 46919 678 ## COG0822 NifU homolog involved in Fe-S cluster formation 46 20 Op 3 4/0.000 - CDS 46958 - 48235 955 ## COG0520 Selenocysteine lyase 47 20 Op 4 41/0.000 - CDS 48241 - 48993 1265 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 48 20 Op 5 12/0.000 - CDS 49010 - 50170 1625 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 49 20 Op 6 3/0.125 - CDS 50200 - 51645 1790 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 50 20 Op 7 . - CDS 51678 - 52397 364 ## COG2345 Predicted transcriptional regulator - Prom 52434 - 52493 1.7 51 21 Tu 1 . - CDS 52527 - 53171 595 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 53202 - 53261 1.8 52 22 Op 1 . - CDS 53300 - 54193 916 ## Bcav_2353 hypothetical protein 53 22 Op 2 4/0.000 - CDS 54190 - 55335 938 ## COG4825 Uncharacterized membrane-anchored protein conserved in bacteria 54 22 Op 3 17/0.000 - CDS 55332 - 57008 1125 ## COG0497 ATPase involved in DNA repair 55 22 Op 4 5/0.000 - CDS 57005 - 57835 566 ## COG0061 Predicted sugar kinase 56 22 Op 5 . - CDS 57832 - 58659 534 ## COG1189 Predicted rRNA methylase 57 22 Op 6 . - CDS 58656 - 58844 78 ## gi|293192942|ref|ZP_06609786.1| dUTP diphosphatase 58 22 Op 7 . - CDS 58844 - 61948 1932 ## COG0647 Predicted sugar phosphatases of the HAD superfamily - Prom 62168 - 62227 2.4 59 23 Tu 1 . + CDS 61965 - 62129 94 ## 60 24 Tu 1 . + CDS 62263 - 62532 102 ## + 5S_RRNA 62272 - 62382 89.0 # Z50061 [R:1..120] # 5S ribosomal RNA # Amycolatopsis orientalis # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Pseudonocardineae; Pseudonocardiaceae; Amycolatopsis. - LSU_RRNA 62561 - 62915 91.0 # CP000750 [D:2413250..2416396] # 23S ribosomal RNA # Kineococcus radiotolerans SRS30216 # Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Kineosporiineae; Kineosporiaceae; Kineococcus. Predicted protein(s) >gi|292819940|gb|ACYT02000075.1| GENE 1 7 - 192 87 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508769|ref|ZP_02044411.1| ## NR: gi|154508769|ref|ZP_02044411.1| hypothetical protein ACTODO_01278 [Actinomyces odontolyticus ATCC 17982] # 10 61 1 52 52 89 100.0 7e-17 MRLVDLPQQMRKAWFDENSRGENGALRELALDDALWDQFNRDYDAWYAERPRPGAPGRLQ P >gi|292819940|gb|ACYT02000075.1| GENE 2 281 - 628 310 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508768|ref|ZP_02044410.1| ## NR: gi|154508768|ref|ZP_02044410.1| hypothetical protein ACTODO_01277 [Actinomyces odontolyticus ATCC 17982] # 1 115 1 115 115 207 100.0 2e-52 MVRNIRERIGSLLPATVTSSELVSDTVPVIHAGAMGLQIWGAFVGQSAGEAMWDEMDPQD LAVRLKAFEMNRLLAVDGGPGWLHLDFTNGWIRVVADTWEPWSIILPGIWWTGDI >gi|292819940|gb|ACYT02000075.1| GENE 3 846 - 1724 625 292 aa, chain - ## HITS:1 COG:ML0523 KEGG:ns NR:ns ## COG: ML0523 COG0781 # Protein_GI_number: 15827185 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium leprae # 24 113 48 136 190 72 44.0 8e-13 MGRDPEVLRDLLRERRVITAAQTPLPEYSIQIIAGVADSLRRIDDLIEAHARVPGLDRVA AVDLAVMRVAVWEMLANSDDVSPIVAIDEAISIVRSISTDASPRFVNAVLDAIRKDIASS WARRGGDDGDFDEAGAGQADGAAGDDGAGAGDTGDAGTAGADRPSDGAADRSGGGEAPVG GDGGADTAGVGGQGSADRTGGADIGTDPDWASGGPSGSGAAHVDGGIVGPDGAVTGLDAA EGSGPHSADPGAPVADRLEDLPAPTRALPEGAEPVESAELVDDELDELLEEY >gi|292819940|gb|ACYT02000075.1| GENE 4 1808 - 2371 863 187 aa, chain - ## HITS:1 COG:MT2609 KEGG:ns NR:ns ## COG: MT2609 COG0231 # Protein_GI_number: 15842068 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Mycobacterium tuberculosis CDC1551 # 1 185 1 185 187 262 70.0 2e-70 MATTNDLKNGLVMVIDGQLWQVVEFQHVKPGKGPAFVRTKIKNVLSGKTVDKTFNAGLKI ETATVDRRDMTYLYQDGTDYVFMDQSTYEQINVPAETVGDARNFMVENQNVIVSQHDGTV LFVELPATVVLTITHTEPGLQGDRSSAGTKPATLETGYEIQVPLFMEEGTRVKVDTRDGS YSGRVTD >gi|292819940|gb|ACYT02000075.1| GENE 5 2396 - 2920 378 174 aa, chain - ## HITS:1 COG:no KEGG:Tfu_1091 NR:ns ## KEGG: Tfu_1091 # Name: aroK # Def: shikimate kinase (EC:2.7.1.71) # Organism: T.fusca # Pathway: Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tfu00400]; Metabolic pathways [PATH:tfu01100]; Biosynthesis of secondary metabolites [PATH:tfu01110] # 3 173 6 172 172 75 37.0 7e-13 MSLIVLIGVTGSGKTTVGRELSRRHELPLYEVDAAVEERLGAPMRTLVVGRDPHLATTAR VEAERLLGLDEGIVTLGASQPLDPATASSIERTRANGAFVIELSADLSAVSRREGLGAPR SVGLGAPRAVLTQLMKQAREAYASVADTTVDTSDRTPQEVADLVARACKLTSDY >gi|292819940|gb|ACYT02000075.1| GENE 6 2917 - 3999 986 360 aa, chain - ## HITS:1 COG:ML0518 KEGG:ns NR:ns ## COG: ML0518 COG0337 # Protein_GI_number: 15827180 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Mycobacterium leprae # 5 346 10 349 361 306 50.0 6e-83 MSTIIRVTGEHPSTITVGHGLGFKPIYEALDEAATKALIIHAHPLASRAEALAQYLREQG IEASTADHPDAEAGKSIEVVASLWDECGRLQLGRKDAIVAMGGGATTDMAGFVAATWLRG ITLINVPTTLLAMVDAAVGGKTGINTSVGKNLVGSFYPATSVVADMDLLESLPTPDLAAG AAEVIKCGFIADPEILRIVEETEPNELLRSYSPQLAEITTRAIAVKARVVSADLTEGGLR EILNYGHTLAHAIERANDYTWRHGNAVAIGCCFAARLAQARGLLSADDVSRHDQLFSRVG LPTRYEGSTLDELTHIMLSDKKVRRGILRFVLLDGIANPGTVSVDPQELRAPASQIGIRA >gi|292819940|gb|ACYT02000075.1| GENE 7 3996 - 4505 369 169 aa, chain - ## HITS:1 COG:MT2614 KEGG:ns NR:ns ## COG: MT2614 COG0703 # Protein_GI_number: 15842073 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 8 167 6 167 176 121 50.0 7e-28 MSAQCPVVLVGLPGAGKSKVGRLLAERLCVDHIDTDALVVEREGRPIADIFATDGEAAFR VMETEAVADALTHDAVVSLGGGAAATPAVRELLSGHTVVYIDAPHEELVRRTASKTHRPL LAEDPSGTLARLRTEREPHYRSVATIVVESGAGPVDDVVTAIAQQLEHA >gi|292819940|gb|ACYT02000075.1| GENE 8 4502 - 5713 795 403 aa, chain - ## HITS:1 COG:MT2615 KEGG:ns NR:ns ## COG: MT2615 COG0082 # Protein_GI_number: 15842074 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 402 1 392 401 380 56.0 1e-105 MLRWMTAGESHGPALLATIEGLPSGLHVTTEDLRRGLARRRLGYGRGARQKFEADEVSIL AGVRHGVTIGAPVAIRIGNSEWPKWETVMSADPVDPSGLLIDAGTGDEREIARNRPLTRP RPGHADLPGMLSYDLSDARPVLERASARETAARVALGVLAEALLEQVAGVRLVSHVVSVG AQHATASLTPTPADEAALCEASMRTLDPEDNARFEAAVDAAKQAGDTIGGVAEVIAYDVP VGLGTHVTARERLDARLAAALMSIQSVKGVEIGDGFTQAALLGSAAHDEIVRGEDGHLAR ASNHAGGIEGGTSNGAPIVARAAFKPISTVPHALRSVDLATGEEAVGLHQRSDTCQVVPG AVIAEAEVALVLADALSDHAGGRSVGEMRRNLEAYLAVVGERA >gi|292819940|gb|ACYT02000075.1| GENE 9 5774 - 6703 703 309 aa, chain - ## HITS:1 COG:no KEGG:Bcav_2236 NR:ns ## KEGG: Bcav_2236 # Name: not_defined # Def: peptidylprolyl isomerase FKBP-type # Organism: B.cavernae # Pathway: not_defined # 49 294 29 275 308 119 37.0 1e-25 MFLRVVLAVVLIAAGGGLAWWAFHPRPAADEASAPESATQSTTLALFDRVTVSGRVGATP TIEIKAPLELDGFKARVLEEGSGREITEGSPVLVSVTAFDGTSGRMLSESGRPQMSLGIV GSGQINDDLSRLVTGKREGTRVLAFRSITMGDGSPNTIEVDVVDILPSIATGTSVDASVG PMSVEMSPEGPIISHIDTLPGGVTTQTLIKGDGVQVHEGDRVVAQFTVLGWTDGTVRVST WETGVPEVINLGTAMKGLATALVDQKVGSRLAITIPPDLAAGDDTLCVVIDILGTEPGTA TNGDQAPQS >gi|292819940|gb|ACYT02000075.1| GENE 10 6811 - 8124 1090 437 aa, chain - ## HITS:1 COG:no KEGG:Jden_1206 NR:ns ## KEGG: Jden_1206 # Name: not_defined # Def: protein of unknown function DUF245 domain protein # Organism: J.denitrificans # Pathway: not_defined # 1 432 25 458 459 403 49.0 1e-111 MDAEHAARQLFEPLLHQGRSSNLFLRNGGRLYLDVGAHPEYATAECDRLEDLLEQDRAGA SMLADLAVQADEALSELGSDLHLHLFRNNLDSQGNSYGCHENYLLHRRRDYRQVADALVA FFVTRQILVGNGWINTAAATPRLQFSQRADQMWDAVSSATTRSRPIINTRDEALADSGAY RRMHVIVGDTNVAEPTTALKIGMTELLIHAIEDGLQIEDLSLADPMRAIREINSDLSGSA PLELANGRTTSAVALQREIHERVLARIPVAELDPMRAYVVDLWGRGIDAIASGDWSNIDT ELDIAIKHKLLTSYCARSGASITDPRVARLELSYSDITADGLWERMERAGLMRRLTTVEG VHRAQTIAPATTRAHLRGRIIAAAEDARADLSVDWVHVRLDESSTIPLSLQDPLATTDPR VDALIAQIDSQSPTIPA >gi|292819940|gb|ACYT02000075.1| GENE 11 8198 - 8374 250 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508759|ref|ZP_02044401.1| ## NR: gi|154508759|ref|ZP_02044401.1| hypothetical protein ACTODO_01268 [Actinomyces odontolyticus ATCC 17982] # 1 58 1 58 58 91 100.0 1e-17 MSNQIFAGGPTPEDDALEAAGQVQARTSSIDSLLDEIDSVLETNAEAFVQGFVQKGGQ >gi|292819940|gb|ACYT02000075.1| GENE 12 8400 - 9920 1565 506 aa, chain - ## HITS:1 COG:no KEGG:Cfla_2003 NR:ns ## KEGG: Cfla_2003 # Name: not_defined # Def: protein of unknown function DUF245 domain protein # Organism: C.flavigena # Pathway: not_defined # 1 499 1 507 535 427 49.0 1e-118 MSSERIIGTETEYGVYRPGDAWANPIALSTTVVTTYGEISREGTPAQGAGVVRWDYTGED PLNDLRGMRMSRAAADPSLLTDDPYHLAPSGGSERVARPTPEELALPAATTAVLTNGARL YVDHAHPEYSAPETIGARDALLWDRAGEVIAQRVMARLEELGEEPIVLVKNNTDGKGAAY GTHENYQMPRITDLDAIVRGLMPFMVTRPVICGAGRVGRGQKSEVPGFQMSQRADFVENE VGLETTFNRPIINTRDEPHANPAQFRRLHVIGGDGNMFDVSAFLRFGTTSLVLWAIEQGT DLRWDSIVMDDPVQETWNVSHHPDLDYKVTTAGGAYTAVELQQVYLDLVLDTFEETGTTP TQADQEILTLWQSVLDRMRADLFSVATEVEWVGKYQLVKRQKERAGLEWNDPRLAAIDLQ WADLRPSHGLVYRLAKAGMVTRLVSDEEVEYAADVAPTNTRAHVRGWAVANRPDLVKASW SSLVLDPGEGDLIRFPIADARDTSTR >gi|292819940|gb|ACYT02000075.1| GENE 13 9917 - 11461 1542 514 aa, chain - ## HITS:1 COG:ML1316 KEGG:ns NR:ns ## COG: ML1316 COG0464 # Protein_GI_number: 15827684 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Mycobacterium leprae # 4 514 53 591 609 463 47.0 1e-130 MSEVEERQALERRLISLEEKNGRLTTALTTARTELIRLQGELADVSRPPQTLATFVRAFP ASRQIEVVTGGKRMRVAVTPKLDVTNLSYGQWVRLDDTMIAVAADDFPRSGQVVSVLELV GPDRVLVATEGGAENLLELAGPLRHGNLRPGDSLVVDARSGIAFERIVREDVEQLLTPEV PDVTYEDIGGLDDQIAQVRDSIEMPFNHPELYRQFGLRPPKGILLYGPPGSGKTLIAKAV ANSLSKRGGASTFFLSIKGPELLNKFVGETERQIRAIFARARTLAAGDTPVVIFFDEMEA LFRTRGTGVSSDVETMIVPQLLAEMDGVESLDNVVIIGASNRADMIDPAVLRPGRLDVRI RVDRPDRAGALDIFSKYLTPQVPIHASEIERFGGINEAVAGMSERGVDALYARNETTALF LATLVNGDHKRIYLSDLVSGALIAGIVERAKKYAIKDALMGASSGLSMDHLLRGVHEEMN ESLELAATSSPEDWARTSGLAPEIVSVKPIGTVK >gi|292819940|gb|ACYT02000075.1| GENE 14 11454 - 12479 1051 341 aa, chain - ## HITS:1 COG:Cgl1462 KEGG:ns NR:ns ## COG: Cgl1462 COG2519 # Protein_GI_number: 19552712 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA(1-methyladenosine) methyltransferase and related methyltransferases # Organism: Corynebacterium glutamicum # 13 286 5 277 278 271 51.0 1e-72 MSANDFGQPTRRGVLSEGDRVQVRDPKGRFHQVILVSGGRFQSNRGGFNHNDVIGRHDGQ VIVTEEGRQFQILRPLQVDYVMSMPRGAAVVYPKDAGVITHMGDIFPGATVVEAGAGSGA LSMALLDAVGPQGRLISVERRQDFADIAAANVDLWFGRRHPAWDLRVGDVDEVLWSAEEG SIDRIVLDMLAPWENIEAITHALIPGGVLVCYVATVTQMSRLVEDLRASERFTDPIAWED IRREWHLDGLAVRPEHRMVAHTGFLVVTRLLAPGVTPQERSTRPAKAAEGQGGAWDDEPD WSLEKVGQRVNSEKKVRKVRRDVVAQADTWASEGREAATDE >gi|292819940|gb|ACYT02000075.1| GENE 15 12583 - 13437 573 284 aa, chain + ## HITS:1 COG:MT2179 KEGG:ns NR:ns ## COG: MT2179 COG2887 # Protein_GI_number: 15841611 # Func_class: L Replication, recombination and repair # Function: RecB family exonuclease # Organism: Mycobacterium tuberculosis CDC1551 # 13 271 9 270 278 185 40.0 9e-47 MTDLITPSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETRAKALGTIVHAVLE KLFALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVDGYFAI EQPQWIAPAALEQRVTTTTSGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGPRYVDEAL YQLRFYALLLARTQVLPSRMQLVYLKAGQVITFDPEAGDIASFERHIDQLWDSIARDIEN DSFAPRKNPLCNWCGVRSLCPVFGGTTPPLPEQHARWLSRTRLG >gi|292819940|gb|ACYT02000075.1| GENE 16 13442 - 14374 480 310 aa, chain + ## HITS:1 COG:Cgl1480 KEGG:ns NR:ns ## COG: Cgl1480 COG0667 # Protein_GI_number: 19552730 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Corynebacterium glutamicum # 7 309 3 311 312 149 35.0 6e-36 MDLKQCGRTGLYLSAIGIGTLTWGRDTDGPEALDMLRRFVDAGGNLVECSASHGDGMAVD ILSEAISAVGRHRVAVAWRGGVRRASEGAWVSAAGRGDLLRSLDDALARLDTDYVDVWMV EPRPEVPLEETLEAATAAYRSGRARYVGLSRATQWQLAEAVTHGVLGASAPISVVEFPFS LADTSRAARVAELSEHGVGVIAASALAGGALTGKYRHSTPADSRAASPHLCHLVEGHLTG SARGVIEAATRAGAGLERSTGDVALAWVRDYPGVTSALVGPRTLRQLETLLDYTEPLPAP IRQVLSEVAQ >gi|292819940|gb|ACYT02000075.1| GENE 17 14480 - 14767 318 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192901|ref|ZP_06609745.1| ## NR: gi|293192901|ref|ZP_06609745.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 62 4 65 98 75 100.0 9e-13 MTGDARRALTRLLNAFENHFDIARDGDEADDAALEAAELALRDAFFTYDDILFTQLGVEL PFDILDDSEDDDDDFDDSDEDDGDEDDDDFIEVDD >gi|292819940|gb|ACYT02000075.1| GENE 18 14801 - 15898 1435 365 aa, chain - ## HITS:1 COG:all2964 KEGG:ns NR:ns ## COG: all2964 COG1252 # Protein_GI_number: 17230456 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Nostoc sp. PCC 7120 # 3 306 6 348 442 85 27.0 1e-16 MARVAVIGGGYGGVTVAKGLDPIADVVLIEQKDQFVHHAAALRAAVDTVWEHAIFMPYTN LLHRGEVLRGTVSRVDGTTVHVFGHDPIEADYVVFATGSTYPFPAKYSSYRSSVAKARLE QLHENLGRARSVMIVGGGTVGIELTGELANAFPGLDITIVEASDQILGTPGYTDALRNEI SEQLSTLGVRVVTGSELAYLPPQNVGDLSHFMVETKNGEVIEADLWFQCYGARANTGFLI GSDYESVMNPNGTIRVDSTMEVADHPNVYAVGDLTDVRESKRADAARQQARVVIANITAQ IEGEKPDAIYQPTKEWVILPLGPNMGASQLLDADGQTRILGAEQTAEIKGTDLMVSVIRS QLNLP >gi|292819940|gb|ACYT02000075.1| GENE 19 15970 - 16482 726 170 aa, chain - ## HITS:1 COG:no KEGG:Arch_0917 NR:ns ## KEGG: Arch_0917 # Name: not_defined # Def: protein of unknown function DUF2166 # Organism: A.haemolyticum # Pathway: not_defined # 17 158 13 153 155 155 59.0 4e-37 MSEKNTPTSNTQSAPSPMELVQEFHRTYSMPIRSFDDPTLSYERLGMRMSLIAEEFAELM GAVYGKRARAIIETATAEAVAADDGERDVIEAADALADLIYVIYGMAIESGMDLDSVLAE VQASNLSKLMPDGSVKLREDGKVLKGPNFFPPNVARGLGLETGESANDAD >gi|292819940|gb|ACYT02000075.1| GENE 20 16479 - 17162 583 227 aa, chain - ## HITS:1 COG:Cgl2513 KEGG:ns NR:ns ## COG: Cgl2513 COG2761 # Protein_GI_number: 19553763 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Corynebacterium glutamicum # 1 221 11 220 245 98 29.0 8e-21 MRIDMWLDTCDPWSYLGLRHLRAALEEFEHRDEVEVYLHAFLLDPELDAPVDKPRVVALV GSGAATLEEVRESDERMQALGAREGICFDFDNLIIAPTSRAHRVIAAAHDADIDADTVAG PSSLQLKVAEAIMRAHFEMGLDISHPEVLIGCAQDIGMPPELAALAVGDEEWASRVYSDF QMAMHMGVTTVPTYVFDAQYLVDGHQTITAFTNILATAWEQSRKDHA >gi|292819940|gb|ACYT02000075.1| GENE 21 17387 - 17977 506 196 aa, chain - ## HITS:1 COG:Cgl2461 KEGG:ns NR:ns ## COG: Cgl2461 COG1846 # Protein_GI_number: 19553711 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 69 189 35 155 164 63 33.0 2e-10 MDKDTWLPRVVGAFLVTMPYYPERSIRHDHEEGDMESRAQLTPIVQANSARAAAWRVFFE ASGRLQGILETRLKRTYGVSMPDYNILLALWEAPGHRLRMGELADRVVYSPSRVTYLVSN LSRDGWVERVPSAVDRRGYDACLTTQGIETVLAATELHQQTVSEYLLDGMTDADIDSIAK VFATLDSRLRGGEKDS >gi|292819940|gb|ACYT02000075.1| GENE 22 17928 - 18641 582 237 aa, chain + ## HITS:1 COG:SP0104 KEGG:ns NR:ns ## COG: SP0104 COG0546 # Protein_GI_number: 15900047 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Streptococcus pneumoniae TIGR4 # 16 203 3 185 210 107 34.0 2e-23 MTKKAPTTRGSHVSLSISVVLFDVDGTIVDSAPAVMSAFRGALSDYDCPIPDDRRLRTYV GPPLWYSFGDLGYEGELLANLVSGYRSRYQAHFLDPEPFPGVIELLHELHNAGVPLATAT SKQAPMALAQMEHLGLSSVFDVIAGATPDPASSKATVIHEALTRLEDRGADISRPVIVGD SIWDVRGAKEAGIPVIGVGWGYATDDGLADADAVCDTVDDLRTYLLDGVAQHARSAG >gi|292819940|gb|ACYT02000075.1| GENE 23 18638 - 21922 1323 1094 aa, chain - ## HITS:1 COG:MT3480 KEGG:ns NR:ns ## COG: MT3480 COG0587 # Protein_GI_number: 15842966 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 7 1094 65 1098 1098 873 49.0 0 MTTERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAART AGLPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAM SARALSEPGQRNPRHDLVNLSEAGGELVVLTGGRRGPLMRALRAGGTAPARRVLDGLVDA FGCDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATRL GSSLNEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRTQ VPDGHTPDSWLAHCTYEGASVRYGSRAHHPRAWETIEHELGVIERLGFAGYFLIVKDIVD FCARNGILCQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGPPDIDVDIEACR REEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAWSQGRGEVPPLV GDAAQALARLPRHMGIHSGGMVLTDQPVSRICPVGWAAMPGRTVLQWDKEDCADAGLVKF DLLSLGMLTALRVAFDELRAGGARAGEASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRV YDLLCAADTVGVFQVESRAQMNTLPRLKPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRS GREEVTYLHPLLEPALRQTLGVPLFQEQLMRIATDAAGLSGARADQLRRAMGAKRSPERM EALKGDLMAGMEERGIDAPTRERIFEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPE HFYAAILASQPMGFYSPATLVQDARRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPG RPEALPSRGTVALDVDRELAVRIGLSQVRGLGAVAERIVEARRQGAFTSQADLARRAHVS ASAMEKLAMAGALECLGVGRREGAWAAGALAQPQARAGQWQPFLPGTEVGARVPELPSLS EAERMRSDVASTGLTPGRHPFSYVRGSLPASVLRAGELGQHLAGRIIDIAGVVTHRQRPH TGGGITFLSLEDETGFVNVSVSVGAWKKFRRVCLESNALLVRGTLEWGDGAINVQAFQIV PVDLPIDVRSRDFR >gi|292819940|gb|ACYT02000075.1| GENE 24 21943 - 23103 731 386 aa, chain + ## HITS:1 COG:PH0655 KEGG:ns NR:ns ## COG: PH0655 COG1063 # Protein_GI_number: 14590542 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Pyrococcus horikoshii # 34 357 3 323 348 163 33.0 7e-40 MFDTVVGGSCVGAYRWGERRPSHEEHKPYAGSMESMLAASLRSPGALVLDERPIPTLGPR DVLLSVEATTLCGTDLRIATGQKTNGVTPGVVLGHEIAARVWRVGSDLTAGVDVPAPGTQ VGLAPEIACGHCAPCTSGRSNVCANMRLFGTGVDGALADFIIVPEEALACITPVAREIAP PHLALAEPLSCCLRATTRLPIESNSRVLVLGTGPIGLIHCALAVSAGARVMACGRQARLE PARAMGAELTTGAQGEDLVREVMTWTDGVGADVVIIAVGAPALVSVAAQCARIGGHISFF AGFPAGAMTQIDPNLVHYRELTISGSANATLDDYTAAVEALSSGRINLSPLITHEYELSD VSDALNAVRTRAGLKVAVRPKGFAAL >gi|292819940|gb|ACYT02000075.1| GENE 25 23100 - 26231 1635 1043 aa, chain - ## HITS:1 COG:all4900 KEGG:ns NR:ns ## COG: all4900 COG0553 # Protein_GI_number: 17232392 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Nostoc sp. PCC 7120 # 434 1042 268 866 869 346 35.0 2e-94 MVSLSHTLASLSDDDMMALVGPAAWANGLRLARSGAVREFSWSDDGEQAEARVKEAGLTY RVRVAQDAVRPSLACACPLRSDCPHTVATLIVGREDARDKQRSVPEWSRVLEQMLGSDRD RLGEPLALVVDAHDPGVEPSLIPLRRSSSSGWTTKRASWLDLTATQWASVTDGLDPTHVS LMREGYRLSRESRSWHSRTEVTLSSLGEHAYAWLARLLRAGVELYASPDADERVVLSHAT WDADIDVRSGDDGLDVRVVARNGDEVVTRPRIDRDASVLLLDGGRGIARIEGVGMLDGFP LDRGLHIPAADVAQFRGTWLPALLKRFSMASSDGSFDPQARPDVSLVGTVRRDGESVVVR WWAEYRQGESRSRTPVAHCVEDEDVAEILGRVELWGRGFDSALWTAPPTTGRLSPWRVPA FLEAVVDAEGIDGLVWDVAEDVRAIDVREDGFDVDVSVDPATRDWFDLNVRLRLGRVTIS VREALEAIANGQDYVEVEGTWVRLDGERIRSLATLLEEARTLAGWDGEGFRLTPMQVGVV DLFASASDHVSLSDAWRMRVAPLRDGSADEGVPPVPSLSSVLRPYQRHGHAWLTARLSGG IGGILADDMGLGKTVQILSAVAALRAHAPAGDPSPVLVVAPTSVVGVWIDQARTFTPHLR VRAVTETATRRGTTIQEEVADMDIVVTSYTLARLEAEQWNQVRLGGVVIDEAQAVKNPRT ATYRALRDLESPWKLAVSGTPIENSLGDLWSLLSLTCPGLLPPWETFQQQVRRPIENGAD PAMLGRLTAYVAPFVLRRTKEEVAPDLPDKIVDIVRVDLGKEHRRIYDQYLARERARILD LLRDVDANRMSVLAAITRLRQLALDPALVEESYAHVGSAKIEYLADRLDEIVPLGHQALV FSQFTSFLERIRHMLERRGISAVQLDGSTRGRAEVIEKFRSGDAQVFLISLKAGGSGLTL TEADYVYVMDPWWNPAAEEQAIDRAHRIGQMKKVNVYRMVATDTIEAKVVELQDRKRQLI SSVMNGTGMGARLSEADLRGLLD >gi|292819940|gb|ACYT02000075.1| GENE 26 26271 - 27485 135 404 aa, chain - ## HITS:1 COG:MT3501 KEGG:ns NR:ns ## COG: MT3501 COG0389 # Protein_GI_number: 15842987 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Mycobacterium tuberculosis CDC1551 # 10 401 96 489 492 129 31.0 1e-29 MALVSAIEEAVGVECFVGIADGPVASLEAAREGRIVPAGENQLFLGRIPLHRALWAVPVA MTDRAADAIELLTGLGVHTCADFLALGRGRVCERFGDVGEQLWNLASGGDSALTPAGRIQ PDITMECVIDVGGDSINTMIVPIQRIARDLSQRLGRGGLVSQTLRIDVEDAGGGQRTRTW SGCDVCVSDDVALRVRWTLAGWTSGIEGPSGAVTCIRVTACDPRVGRSASALWGRSDRER DVSRSVVRIQGMAGPDSLLIPRVQGGYDPRSRVVMTRWGSKPLLRPHEGAWEGRIAHPPA TLFDEPVRVRIVGASGAYDDVRVDYRGALSAAPAYLVSERDVSQSVSGRGRRTAIARVEG PWPVGGRWWAQERPRAYMRALLEDGRDVLLVWKEGEWAIEGLSQ >gi|292819940|gb|ACYT02000075.1| GENE 27 27834 - 28316 -40 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508743|ref|ZP_02044385.1| ## NR: gi|154508743|ref|ZP_02044385.1| hypothetical protein ACTODO_01251 [Actinomyces odontolyticus ATCC 17982] # 1 160 1 160 160 297 100.0 1e-79 MTDAHARLLAARDVLNRAEQAVGLRARDDIEHAQAGISPVLLGPTGRAELIRLLIDTCPS EGWIGVCGVRNIGWEWASQQGMDLDRVLVLNAGKDHQVGDLCSLLIEACDVVCLDIPELS GAQQRTLAARARSMGRTIVTLRPWPGLSREAPRRRMRLVV >gi|292819940|gb|ACYT02000075.1| GENE 28 28446 - 28973 558 175 aa, chain + ## HITS:1 COG:Cgl1487 KEGG:ns NR:ns ## COG: Cgl1487 COG1881 # Protein_GI_number: 19552737 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Corynebacterium glutamicum # 4 167 6 169 177 130 44.0 9e-31 MNIDQRPLAPSPYEGLEAPTFTLSSSVLTDGAPMPESATAEAGSLSPDLTWHGFPEDTAS FMLTCFDPDAPTPSGWWHWAILDIPSSMTHLEAGAGASDLMLDGPAFHLRGDAGEASYFG AAPPTGDRPHRYVFTVHALDTDSLGLDDDATPAMASFAALEHTIARASLTVTHQA >gi|292819940|gb|ACYT02000075.1| GENE 29 28979 - 29440 457 153 aa, chain + ## HITS:1 COG:Cgl0628 KEGG:ns NR:ns ## COG: Cgl0628 COG0219 # Protein_GI_number: 19551878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Corynebacterium glutamicum # 2 153 6 157 157 180 57.0 8e-46 MLHIIFWEPEIPGNTGAAIRLSACTGSMLHLVEPLGFDMDDAKLRRAGLDYHDLAHVMVH DSLDEALAEVPGRVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVEDRVR IQMVDGVRSLNLANSASIVLYEAWRQLGFPNGV >gi|292819940|gb|ACYT02000075.1| GENE 30 29531 - 30079 249 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192914|ref|ZP_06609758.1| ## NR: gi|293192914|ref|ZP_06609758.1| hypothetical protein HMPREF0970_02113 [Actinomyces odontolyticus F0309] # 1 182 1 182 182 332 100.0 5e-90 MVLFPNAMRRDNAVGRIRRVHGHETTNEAVGARDQRPPSLGLGRIIIALFWLLGAWILVT AILDLFHAQGQPWGPRIVALLAGIDYLVAATALTHNGRRMRMVGWVTISLSIAIPIVLWV ASLGLDELNSARSAWTGLGADFYFLPFIVSIIGLIWMWRSNPRRIVSLAEQVERPSSPWR AH >gi|292819940|gb|ACYT02000075.1| GENE 31 30235 - 31608 795 457 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 4 455 2 458 458 310 37 1e-83 MSESTYDIVILGAGSGGYATALRAAQLGMKVALIDGDKVGGTCLHRGCIPTKAYLHAAET AEAVRESSKFGVSSTFNGIDMAQVGKYRDSVISGLYKGLQGLLKSRNVEMISGWGRLADA NTIEVNGQRITGRNIVLATGSYSRSIPGLEIGGRVISSDQALQMDWVPSSAVILGGGVIG LEFASVWRSFGAEITIIEALPHLANNEDEAISKQLERAYRKRGIKFHTNTRFASATQNEQ GVHVTTEDGKAFDADVLLVAVGRGPVTEGLGYEQAGITLDRGFVITNDRLHTGVGNIYAV GDIVPGLQLAHRGFMQGIFVAEEIAGLNPTMQADINIPRVTFCEPEIASVGMTEKQAREK FGDQVRTVEYNLAGNGKSSILATSGIIKLVSVEGGPIVGFHGIGARIGEQIGEGELMVNW EAYPSDVASLIHAHPSQNESLGEAAMALAGKPLHVHN >gi|292819940|gb|ACYT02000075.1| GENE 32 31636 - 33342 2241 568 aa, chain + ## HITS:1 COG:ML0861 KEGG:ns NR:ns ## COG: ML0861 COG0508 # Protein_GI_number: 15827386 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Mycobacterium leprae # 1 568 1 530 530 445 53.0 1e-124 MATSVTMPALGESVTEGTVTTWLKQVGDTVELDEPIVEVSTDKVDSEVPSPVAGVLLEIL VPEDETVEVGTEIARIGDASEASAAPAAAPADAPVEAPAAPAAAPVETAAAPASAPAQGT EVRMPALGESVTEGTVTTWLKSVGDAVDADEPLLEVSTDKVDSEVPSPVAGFLAEIRVPE DETVEVGTVVAIISSSAPSAAPVAEATAPAAPVAPAAPAAPAAPAAPAAPVDPFPNASTL AQTASAAPVVETPVAVTGSAYVTPIVRKLARELGVDLASVSGTGVGGRVRREDIEAAAAA ARAAVAAPAAPAASAAPAAAQANAVREPSPLRGTTEKMSRLRQTIARRMVESLQTAAQLT TVIEVDVTKIAALRARSKDAFLAKHGTKLTFLPFFVKAATEALAYHPKINATINDKEVTY FDYEHVGIAVDTPRGLLVPVIKNAGDKDIAGIAASINDLAARTRESKIGPDELSGSTFTV TNTGSGGALFDTPVLNMPETAIMGVGTIVKRPVVMKGADGADVIAIRSMVYLSLSYDHRL VDGADASRFLMDVKKRLEEGAFEADLGL >gi|292819940|gb|ACYT02000075.1| GENE 33 33426 - 34760 686 444 aa, chain - ## HITS:1 COG:no KEGG:CJA_3295 NR:ns ## KEGG: CJA_3295 # Name: not_defined # Def: putative serine/threonine protein kinase # Organism: C.japonicus # Pathway: not_defined # 2 141 13 157 892 65 34.0 4e-09 MNIGGYDIGQIFHIGATGPVWRTRTNAGEALLSLRAAGDGERCLDRWKAWASITSRHVVA LRDVARSDDGRWAIVYDYVAGRPLDAEIGSPDLRPIATRRQIIEGIAAGVSALHSAGIVH GDLTPSNIIVTPSGRAVIIDLIDELGEDDGTPGWSQGRSGPQADRACLRQLAQILHMDEA LAELGFDEPNDCLADATPVVNDPVEHPISREPVDPERVIADLRAAALREDTLRDRQSERP AASTPQNVRGGRQEAQRGRRRALGVLAMGLMAIIAGVSIMAYGFLGSGPSDDQSETSVDS DPSQSLEQSSGSPCDVSALSETINRAIRTRDDAVVAGDPTPLESVLGGELLDQDKERIAM MQSDGVRVSQLSSRIDDVSVLACEPGAIDVSATLTVLTSETCRAGTCEKRSEPQVTDLRV RVDPVSGKVVKAEPADQQSGADAQ >gi|292819940|gb|ACYT02000075.1| GENE 34 34866 - 35558 640 230 aa, chain + ## HITS:1 COG:no KEGG:RMDY18_07220 NR:ns ## KEGG: RMDY18_07220 # Name: not_defined # Def: hypothetical protein # Organism: R.mucilaginosa # Pathway: not_defined # 20 229 26 237 238 166 41.0 6e-40 MSESNPPGKRRFYQNVLDAYRLTKRTYPALPWMLLGTVAAVIAVFVLVAWLTNMSLIGWL VVGIMGSFTAALALLSILTRRALYSQVEDTAGAVKVALSQIQRGWVIPEQPVAYTREQDL VWRIVGRAGVVLISEGPASRVRPLLQAETKRVTRVMRNVPVHQIQVGHDDGQIALKDLQR ELRKLKNVLTPEEVPQVSARINALRSGEPPIPKGIDPFRAKPSRRALRGN >gi|292819940|gb|ACYT02000075.1| GENE 35 35699 - 36634 1268 311 aa, chain + ## HITS:1 COG:Cgl1300 KEGG:ns NR:ns ## COG: Cgl1300 COG0834 # Protein_GI_number: 19552550 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 54 307 77 329 334 146 36.0 4e-35 MHTKKILAMLTLASTATAMAACADPTTSTSTADTTTGAATSTTSHYDISSIPTVDEIAAL VPDGIKKRGTLRNGASTGYAPAEYMDADGQTPIGYDIDINKALAKVMGLKAGETKHSEFP TIIPALGTKFDVGISSFTITSEREQQVNMVSYLNVGSAWGVAAGNPKNFDPSNPCGATIA VQTGTAQEEYAATLSDECVAAGKEKITVMPHELQTDIATKLTGGQYDATLADSTVIGYTS SQSAGKIEQLGDTFESAPQGVAVAKDDAQLAEAVQKAMQYLMDNGYLNDILASYGAENAA LTTATLNPTVD >gi|292819940|gb|ACYT02000075.1| GENE 36 36731 - 37675 1169 314 aa, chain + ## HITS:1 COG:Cgl1300 KEGG:ns NR:ns ## COG: Cgl1300 COG0834 # Protein_GI_number: 19552550 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 56 309 77 329 334 132 36.0 1e-30 MTISKAHALIVLAAAAALPLAACADPTSTSSSTSESESTSAAATTASYDVSKIPTVDEIA ALVPDEVKERGTLRNGASADYAPAEFLGDDLQTPQGYDVDINKALAKVMGLNEGTTNHAE FPTIIPALGTKFDVGISSFTITSEREEQANLISYVEVGSAYGVAAGNPKNFDPTDPCGKT IGVQTGTAQEDYATELSEQCVADGKDKITIMPHDLQTDIATKVIGGQYDATFADSTVIGY TANLSSGKIEQVGDVVESAPQGVAVNKNDEQLTQAIQKAMQYLMDNGYLKDILTTYGAQD AALTTAELNPATND >gi|292819940|gb|ACYT02000075.1| GENE 37 37683 - 38645 1148 320 aa, chain + ## HITS:1 COG:Cgl1299 KEGG:ns NR:ns ## COG: Cgl1299 COG0765 # Protein_GI_number: 19552549 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 11 287 18 285 316 228 47.0 2e-59 MATIKDGVELIDAKPVPRPGRWASAIVAAILAAMVAHALVTNANFQWQVVSQWLFSRSIL QGVLFTIILTILAMVVGTALAITMAIMRQSVNPVLRWVAMAYIWFFRGTPIYTQLIFWSL LPTLYPKLSFGVPFLGSLWGWELTFDTATYFTPFWMAFIGLGLNEGAYLAEIMRAGLLSV PKGQWEAATALGMPRGTIFRRIILPQAMRVIVPPIGNETISMLKTTSLVSAIPFTLELTF IARQRGQATFAPVPLLIAAAIWYLVITSLLMWIQSFIEKYYGKGFERRDNAGAHSPATSS SSHEDDEDKGTKLKFLDVTP >gi|292819940|gb|ACYT02000075.1| GENE 38 38642 - 39415 615 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 7 256 1 242 245 241 49 7e-63 MTTTTPMVSVRGVHKFFGDLHVLQGIDLDIASGEVCVILGPSGSGKSTLLRCLNMLEDIS AGRVYVDGELLGYREDEDGVLHERHDKEIAAQRSRIGMVFQRFNLFPHKTALENVMEAPV QVLKRSKIEARTQALELLDRVGLADRADHYPAELSGGQQQRVAIARALAMDPEIMLFDEP TSALDPELVGEVLQVMQDLAASGMTMAVVTHEIGFAREVANQVVFMDGGVIVEAGAPSEV IDNPKSERTKEFFSKVL >gi|292819940|gb|ACYT02000075.1| GENE 39 39498 - 41087 1422 529 aa, chain - ## HITS:1 COG:ML1816 KEGG:ns NR:ns ## COG: ML1816 COG0488 # Protein_GI_number: 15827973 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium leprae # 1 528 9 544 545 554 54.0 1e-157 MRIGPRELVNHASFRIDKGMCIGLVGRNGAGKTTTMRLLAGEDDRGGAAEYTGTISSNGT VGYLAQDTHVGDPSMKARDRIISVRGIDTIIARIRKAEHEMSTTEGARQQRAMERYVKLD QQFTNSGGWAANAEAAQIAHSLGLEDRVLDQTLDTLSGGQRRRVELARVLFSDADVLLLD EPTNHLDHDSIVWLRDWIKTFPGGVMIISHDVKLLGDTVNQVFYLDANRAQIDIYHLGWS AYLKQREEDERRRRKERANALKKAEHLKAQGEKMRAKATKAVAAQQMLRRAEELFALAGS EIVQDKVARLRFPDPAPSGRVPLTAEGLSKSYGSLEVFTGVDLAIDRGSKVVVLGLNGAG KTTLLRLLSGIEEPDSGRVVPGHGLKLGYYAQEHETLDETRTIRENMAEAAPTLDDTHVR NILGQFLFQGDDVEKPVSVLSGGEKTRLALATLVVSGANVLLLDEPTNNLDPASREEILA ALRDYEGAVILVTHDPGAVTALNPERVLLLPDADEDLWDDSYLDLVTLT >gi|292819940|gb|ACYT02000075.1| GENE 40 41137 - 41943 955 268 aa, chain + ## HITS:1 COG:Cgl0234 KEGG:ns NR:ns ## COG: Cgl0234 COG1738 # Protein_GI_number: 19551484 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 43 267 26 249 250 189 48.0 4e-48 MWANQPTCEAALLRMITLGAGTMGVGINRYLLCFARFHPMSDSPVPSGSARPTRALDIVS VAFVALLLISNIAATKAFMLGTSTHYLIFDGGAILFPLTYIIGDVLSEVYGFARAKRVII MGFVASLLASLTFFVVQYLPPAPDYENQDAFAAVLGVVWRAVLASLVGYLAGQLLNSYVL VWIRQRWGSKHLWARLIGSTIVGEAADTILFCTILFYGEMSLGNFINYTVTGYFYKVLLE VILLPLTYPVIAAIRRTEGLKKDEVFDR >gi|292819940|gb|ACYT02000075.1| GENE 41 41940 - 43265 1320 441 aa, chain + ## HITS:1 COG:Cgl0233 KEGG:ns NR:ns ## COG: Cgl0233 COG0343 # Protein_GI_number: 19551483 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Corynebacterium glutamicum # 29 439 3 416 418 503 62.0 1e-142 MNDNWLSAPTPEQLTPFEPPASEGAHHPDRGFTIGHRMESHGGLGRTGVIHTAHGTIATP AFIPVGTKANVKALTPEMVRSLGAQAVLANAYHLYLQPGSDIVDEAGGFGPFMNWSGPTY TDSGGFQVLSLGAGFKKVLSQEFSGQADPTDPKVQMQAIKASNAVVDDDGVIFSSHIDGT KHRFNPEVSMGIQHQLGSDIMFAFDELTSLLHPRSYQEESLARTHAWAARCLAEHKRLTE ERSHKPYQQLWGVIQGAQWEDLRRQAARTMADMEVDGQRFDGFGVGGALEKENLGTIVSW VCEELGEDRPRHLLGISEPEDLFAGVAAGADTFDCVNPSRVARNAAIYTPDGRFNITNAR FKRDFTPLVEGCGCYTCTHYTRAYIHHLFKAKEILSATLATIHNEWFTLRLVDGIRASII DGCFDQFRSDMLGRYEAGRRR >gi|292819940|gb|ACYT02000075.1| GENE 42 43281 - 44177 919 298 aa, chain + ## HITS:1 COG:MT2651 KEGG:ns NR:ns ## COG: MT2651 COG2321 # Protein_GI_number: 15842113 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Mycobacterium tuberculosis CDC1551 # 57 294 57 288 293 221 48.0 1e-57 MSFNENIRLDPSRVGTSGAGRKIAGAGGGSLLGVLLILGFSYFTGIDLTSLLSTSSDTSS TSSSAVDTSTCQTGQDANTRVECRMVATAQSLDAVWKTQLSAQDTGVAYQLPDFQIFTNS VSTACGNATSAVGPFYCPGDSTVYLDLGFFDDMVSKYGASDSVLAQEYVVAHEWGHHIQN IQGVFRAHDTRESGEQGAGVRSELQADCYAGVWMHWASNTPDPSTGTPFLKTPTADEVLG ALQTAQAIGDDRLQEKYQGSSNPETWTHGSAQQRATWLQRGLDSGDISTCDTWSIPRV >gi|292819940|gb|ACYT02000075.1| GENE 43 44229 - 45914 1172 561 aa, chain + ## HITS:1 COG:Cgl0395 KEGG:ns NR:ns ## COG: Cgl0395 COG0318 # Protein_GI_number: 19551645 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 17 561 18 568 568 400 39.0 1e-111 MTRSIVEQAHDMYDAVPYEVPVPDGSLYNLLDDAARLYPDRIALDYFGATTTYAQVRDQV LKAARVLHEAGVGPGDTVAIALPNCPQAFVAFYACMRIGAIAAQHNPLAPASEIAGQLGR HGGKVAIVWEKCVDAYPLSVLDTVFTVDISHDMPASQRLLLRLPVARARETRNQLRGSVP SGTRSWDRATASSAPIDPSFPLPSPDDRAVILHTSGTNGIPKSAPLTHRNIGVNVNQCMF WVWKLHEGAETFFSLLPYFHAFGLTFFLCASVRKAATQVLLPKFDAQMALDAHKRRPITF FVGVPPMFERILRLATRTKTDLSSIRYSVAGAMPLSTTLAGEWEEATGGMIVEGYGLSET APVLTGAPLSDKRRHGVLGVPFPSTQLRLVSLDDDTLDVEDGQPGEIIVRGPQVFEGYLD AAEETARVFTSEGWFKTGDIGVNSDGFISMADRKKELILSGGFNVYPSQVEAAIRSHPSV NDVAVVGVPVSDATEEVAAAIIMQEGSAPLTLEEVRAWAEKTIAHYALPRQLVVIAELPR NQMGKILRRKVAQLVREALGR >gi|292819940|gb|ACYT02000075.1| GENE 44 46001 - 46432 668 143 aa, chain - ## HITS:1 COG:MT1513 KEGG:ns NR:ns ## COG: MT1513 COG2151 # Protein_GI_number: 15840926 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 47 143 14 115 115 123 66.0 1e-28 MSNPMAQSEPVEQRFGAPAQEAPDAEVPTRQIDGTDVIEQGTLAAENVLEALKDVIDPEL GINIVDLGLVYGVVIGSENQVRLDMTLTSAACPLTDVIERQAQTILSAVTDEVQINWVWM PPWGPDRITPDGREQLRAIGFNV >gi|292819940|gb|ACYT02000075.1| GENE 45 46443 - 46919 678 158 aa, chain - ## HITS:1 COG:MT1512 KEGG:ns NR:ns ## COG: MT1512 COG0822 # Protein_GI_number: 15840925 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Mycobacterium tuberculosis CDC1551 # 4 145 5 146 162 107 43.0 7e-24 MGSLEQLYQQVILDHAREKHGAGDPSGMDASSHQVNPTCGDEVTLGVTLDGERLTSLQWD GDGCSISRASLSMMTDLTQGKSAEEIGRLYRDMEVMMHSRNRGVDDEILDDLGDAAALES TSQFANRVKCALLGWYALRDAMAKSGIDISTAGEPAEQ >gi|292819940|gb|ACYT02000075.1| GENE 46 46958 - 48235 955 425 aa, chain - ## HITS:1 COG:MT1511 KEGG:ns NR:ns ## COG: MT1511 COG0520 # Protein_GI_number: 15840924 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Mycobacterium tuberculosis CDC1551 # 1 425 1 416 417 434 54.0 1e-121 MSTDFTAAELNAIRSDFPILSRVGRGGAPIAYLDASATSQKPACVIDAEADFYRRSNGAV HRGTHLLGDEATDAFESARGTLASFVGVAPDEIVWTKNATEAINLVALSMGNASQGMGGA QSAALRVGRGDRIVCTRAEHHANIVPWQQLCERTGAELAWLDLTPDGRIDLDTLSVITPN TRLVAFTHVSNVTGAVSPVAAVTAAARAVGALILLDTCQSSAHMPLDLSVLDVDFAVFSS HKMLGPTGAGALWGRRALLAAMPPVLTGGSMIEWVTMEESTFMAPPERFEAGSQPVAQIA AWSQALRYLSMLGMDRVEAHEHALTRMMLDGISSIDGIQVLGPDSDVDRIGVVAFAVDGV HPHDVGQFMDSVDVAVRVGHHCAIPLHTFFQVRSSARASVAPTTTAQEIDRLIDGLSKVR SFFGR >gi|292819940|gb|ACYT02000075.1| GENE 47 48241 - 48993 1265 250 aa, chain - ## HITS:1 COG:Cgl1525 KEGG:ns NR:ns ## COG: Cgl1525 COG0396 # Protein_GI_number: 19552775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Corynebacterium glutamicum # 1 248 1 251 252 335 65.0 6e-92 MSTLRIKDLHVSVETAEGPKEILKGVNLTINSGEIHAIMGPNGSGKSTMAYALAGHPDYE ITSGEAWLDDQLITEMSVDERAKAGLFLAMQYPVEVAGVSVSNFLRTAKTAIDGQAPALR SWVKDMKSSMENLRMDSDFAERDVNVGFSGGEKKRLEILQMELLKPSFAVLDETDSGLDV DALRIVSEGVNRVHGETGCGVMLITHYTRILRYIKPSHVHVFVDGRVAAQGGPELADELE ENGYDKYLGL >gi|292819940|gb|ACYT02000075.1| GENE 48 49010 - 50170 1625 386 aa, chain - ## HITS:1 COG:Rv1462 KEGG:ns NR:ns ## COG: Rv1462 COG0719 # Protein_GI_number: 15608600 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Mycobacterium tuberculosis H37Rv # 24 380 23 385 397 340 51.0 2e-93 MNKAHSHGADAEKAHPSRADRPTSFNLDDIVVPHGREEDWRFTPMRRIERLFEPANYDAG DAPVTVDAPAPVVVETVTRDDKRLGTVLAPGDRTAVVAWNGFEQATVVEIPAEAELDAPV RINVADIEGTRAQHIVIRAEKFSKATVILSHTGSAQAALNQTVEVETGDSANLTVVSLQE WDDTVLHASNQRLALGRDSKLTHIVVSFGGDLVRVCADTDFRGPGAELNMLGIYFVDGGQ HLEHRVFVDHSQPKCFSRVTYKGALQGKDAHSVWIGDCLIREAADGTDTYELNRNLVLTE GAKADSVPNLEIENGEIEGAGHASATGRFDDEQLFYLMSRGVPEHEARRLVVRGFFAELI NQIGVPEVVEHLMATVEAELAKSRNN >gi|292819940|gb|ACYT02000075.1| GENE 49 50200 - 51645 1790 481 aa, chain - ## HITS:1 COG:Cgl1527 KEGG:ns NR:ns ## COG: Cgl1527 COG0719 # Protein_GI_number: 19552777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Corynebacterium glutamicum # 14 481 14 481 481 731 73.0 0 MTQAPALGVDDRRMTDDEIIESIGVYEYGWHDSDDYSKDVPTGINEEIVRFISEVKDEPQ WMRERRLKALELFERKPMPAWGPDLSHVDFDSFKYYVRPTDRQVNDWEDLPEEIRDTYDR LGIPEAEKSRLVSGVAAQYESEVVYQQIQEDLERQGVIFTDTDTGLREYPEIFEEYFGKC VPAGDNKFSALNTAAWSGGSFVYVPKGVHVTIPLQAYFRINTSAMGQFERTLIIADEGSY VHYVEGCTAPIYDENSLHSGVIEIFVKKDARVRYTTIQNWSTNVLNLVTQRAMVEEGGTM EWVDGNMGAAITMKYPACFLMGEHARGETLSIGFAGPGQQQDTGAKMVHMAPHTSSSIVS KSVSRGGGRTSYRGLVQVNARARHSKSNVLCDALLVDKISRTDTYPYVDVRTDDVEMGHE ATVTKVSADQLFYLMSRGLDENEAMAMIVRGFVEPIAKELPMEYALELNRLIELQMEGSV G >gi|292819940|gb|ACYT02000075.1| GENE 50 51678 - 52397 364 239 aa, chain - ## HITS:1 COG:ML0592 KEGG:ns NR:ns ## COG: ML0592 COG2345 # Protein_GI_number: 15827238 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Mycobacterium leprae # 13 224 38 247 254 143 40.0 3e-34 MERRSGGHVAEESDATTRQQVLDLIVEKGPVTASSIAKVLGLTTAAVRRHITLLLDSKEI AEHEPSAPSKRGRGRPARHYVATERAHVHLADGYSDLASKALGYLGQLGGHEAVESFAAA RSREIERRYAPIVRDAGSDPRVRAQALADALTQDGYAATVRDIGGGTLAVQLCQGHCPIQ NVAGDFPQLCDAETLAFGKLLDVHVQRLSTLAGGGHVCTTHIPVGMPVIRPGARNVRRK >gi|292819940|gb|ACYT02000075.1| GENE 51 52527 - 53171 595 214 aa, chain - ## HITS:1 COG:Cgl1384 KEGG:ns NR:ns ## COG: Cgl1384 COG0494 # Protein_GI_number: 19552634 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 20 212 14 200 223 125 44.0 5e-29 MRFLSPQDAVTIEDQHSPRTVTKSETVWNGHIVDMIKDHVIVIDGQEPVVREYTRHPGAV AVVVLRGESGGEELLLQRQYRHPVKAELWEIPAGLLDIPGEDPRIAAERELAEEADLVAE RWDVLVDYFTSPGSSTEPLRIFLVRELHDAAEAFEREDEEATMEYAWVSLDDALTMVLDG RLHNPSAVIGVLAAHAARARGWAGMRATDAPWLR >gi|292819940|gb|ACYT02000075.1| GENE 52 53300 - 54193 916 297 aa, chain - ## HITS:1 COG:no KEGG:Bcav_2353 NR:ns ## KEGG: Bcav_2353 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 1 294 1 315 345 101 33.0 3e-20 MINFRYHVVSIIGIFIALAVGVVLGAGPLQSRIQAGVSSSATTSAADPLLSAQADAEAAG LKALASSTLTGSLSSAKVALVVLPGASDDDVTAIRSTLTDAGASVVGRVTLTDNWQSTSM SQYRTTLSTTLASHLASGAAKTASADGVVGYSIVQVLTTTGAETDLLRQILTDESTPIMT IDEDANGSATALVAVGPRAQATAASNTTPAAVTSNPDAWVGLGQALGSTNGVLVGDASTR AAMISQVRASGTVVTTVDSVGTTLAAVDTALALSTPATSARAFGVGTGAQSVIPSVK >gi|292819940|gb|ACYT02000075.1| GENE 53 54190 - 55335 938 381 aa, chain - ## HITS:1 COG:ML1361 KEGG:ns NR:ns ## COG: ML1361 COG4825 # Protein_GI_number: 15827708 # Func_class: S Function unknown # Function: Uncharacterized membrane-anchored protein conserved in bacteria # Organism: Mycobacterium leprae # 1 370 3 381 393 155 31.0 1e-37 MSETLSKETSARSGRIRIDDRPKHLATRLERGEIAVINGADLDRESAAALVAAGPVAVLN AQPSLTGRVAALGPRLILEAGIVLVDDLGQDIMSLREGQEVTVTGSKVLVDGCVIATGSI VSLDDLDVDVADSSALFAAVDASIEDYLSKDGATVLHGVNVPQLSDLEKRPILLVTGAAD AKAELRALARWRSEVSPFVIAVDGGADVALNARLSLDLVVGDAELMSEKAIRKARSFIVR AGGDGLAPGADRLDRMGVVYDRVAMAGTSLDAALVVAAHSSAPAVVTAGVSYGEAELVDA GRALVAPAFFSRLAVGSRLIGAQAVAATFRPRPRGWTLVLLAVVALALMGVALWSTPWGN DLLHPVTSFFVSLMHSAGGAQ >gi|292819940|gb|ACYT02000075.1| GENE 54 55332 - 57008 1125 558 aa, chain - ## HITS:1 COG:Cgl1380 KEGG:ns NR:ns ## COG: Cgl1380 COG0497 # Protein_GI_number: 19552630 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Corynebacterium glutamicum # 1 557 1 578 593 293 36.0 8e-79 MIESLDISHLGVIESAHVDFGEGLIVVTGETGAGKTMVLSSLQLLLGARADAALVRSGAD HLSVDGIFSVNEEVAARVEEAGGLVEGGELIVGRSVRTAGRSRAHLGSRPVPASVLTDIV GSMVTIHGQSDQIRLTGEAAQRRALDQFGGEEHAALLGEYRAAFRHAVEVKHRLDSLRGD ASERAEELEDLRAAIKQIEELDPAIGEEEDLVREAARLTNVEDLRALVGVTLSFLKGDDR GDFTGAVEATRHAYAQLDDAARFDEAVAEFVGRARNQVLELEALADDVSAYLSRLDADPE RLAQIHARRAAIKDVLRGRAADIEGLLAWADEARSRVEELSSPGSDPAAVERELVAAQER VLECGRRVTQARVRLAGQLAEGVNEELHALSMPDATLHIDCEPTKPTSNGCETIVFRLQP HPHAPARPLGQGASGGELSRVMLALELMLGRTEASSTFIFDEIDAGIGGQTATEVGARLK RLAQSRQVIVVTHLAQVAAFGDQHLVIEKNDGTTKVHEVSGANREAELTRMMGGDPHSAA ARRHASQVLASAVSQSQG >gi|292819940|gb|ACYT02000075.1| GENE 55 57005 - 57835 566 276 aa, chain - ## HITS:1 COG:Cgl1379 KEGG:ns NR:ns ## COG: Cgl1379 COG0061 # Protein_GI_number: 19552629 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Corynebacterium glutamicum # 1 272 10 305 320 194 40.0 2e-49 MTRVLMVRHRHRPNAVTSAVSLAEALKERGIDVVDDASGGDIDMVLSIGGDGTFLVAASS ARALDVPLLGINAGHMGFLTELGDKGTGDLARKIADGDFSVERRMTLDVTMERPDGSKAD DWALNEAVVMHTDVAHPVHFALVVDGQEVSTYGADGMILSTPTGSTAYSFSAGGPVVWPD TEAIVVAPLAAHGLFTRPLVVGPSACVEIVVLDDIWTPPEMWCDGLRRMTVPAGAVVRAR VGSSPVQLVRVDDTPFSARLVRKFNLPVRGWRDDPR >gi|292819940|gb|ACYT02000075.1| GENE 56 57832 - 58659 534 275 aa, chain - ## HITS:1 COG:Cgl1378 KEGG:ns NR:ns ## COG: Cgl1378 COG1189 # Protein_GI_number: 19552628 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Corynebacterium glutamicum # 4 270 5 272 273 250 53.0 2e-66 MKLRRIDSELVRRGLAKSRAAAAQMIEDGRVKLDGQIVLKPARQMDPAQAIVVEESDDPE YVSRGAHKLAGALDALGDKAPLIEGRRALDAGASTGGFTDVLLRRGAASVVAVDVGYGQL AWKLQSDPRVEVHDRTNVRTLDPASVAPAPELVVGDMSFISLTLVLPALAAAAAPHADFL LMVKPQFEIGKERLGHGGVVRNPEHHVETVETVARCAIERGLDIAAIAASPLPGPSGNVE YFVHMRRDYPDPIDPTQLTDYIRRAVEAGPAGGSR >gi|292819940|gb|ACYT02000075.1| GENE 57 58656 - 58844 78 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293192942|ref|ZP_06609786.1| ## NR: gi|293192942|ref|ZP_06609786.1| dUTP diphosphatase [Actinomyces odontolyticus F0309] # 1 62 1 62 62 90 100.0 3e-17 MALREQTEARLVGFDQLGASLQVETLRAIEADLRRALSADAPSGTVRPGAQPTGSGHEGS GA >gi|292819940|gb|ACYT02000075.1| GENE 58 58844 - 61948 1932 1034 aa, chain - ## HITS:1 COG:Cgl1376 KEGG:ns NR:ns ## COG: Cgl1376 COG0647 # Protein_GI_number: 19552626 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Corynebacterium glutamicum # 642 895 6 257 328 205 46.0 5e-52 MIVVMVSVAVSSVVTMTAVILVRVMIVVGTAVATSGATTAAVVSRTAASAAASVVTIVVM VSVAVSSVVTMTAVILVRVMIVVGTAVATSGATTAAVVSRTAASAAASVVTIVVMVSVAV SSVVTMTAVILVRVMIVVGTAVATSGATTAAVVSRTAASAAASVVTIVAMVSVAVSSVVT TTAVTFGSRDDRRGDRGGYQRRDDRRGSFEDRGERGGFRRDDRRDGERGGFQRRDNDRRD FGSRDDRRGDRGGYQRRDDRRGSFEDRGERGGFRRDDRRDGERGGFQRRDNNRRDFGSRD DRRGDRGGYQRRDDRRGSFEDRGERGGFRRDDRRDGERGSFQRRDNNRRDFGSRDDRRGD RGGYQRRDDRRGGFQDRGRGGAPRNDGGYKNYSSTDEYVSPNGNEPTIPAGVSADELDRD ALRALTTLSGPNRDIVARHLVMAGQLIDLDPEAAYQHAQAAVARAGRVDVVREAAALTAY ASGRYEEALREVRAVRRMRGDSSLRAVEADAERGLGHPDKAVEIIDATVPSALDLAEQVE LVLVSSGARADLGQAEVGLVIVDDALAVLPAEADDELRRRLMEVKAQRLLDLGRDNEAAE VIASMPAEVEDTEIVDIALYADADVDGKRSPLRGSGAALAEEYDCALLDLDGTAWSGDET IEHAATSVIEAREAGMASAFVTNNAMRTPQQVTDKLNSMDFQATPDMVMTSAMDIAAIMA EELEEGSKVFVIGGAGLRLALEERGFVLVDSADEEPVAVVQGLDKKVDWALLSEGAFAIE RGASFYASNLDATLPIERGQALGNGSLVRAIQHATRKRPIAGGKPEPGIYRRAGELVGAQ NPLAVGDRLETDIMGAVAAGVPALHVLTGVHQARDVIRAPRGQRPTYLAIDMRGLLEAHP APKHHRDGTWTCGVSQVAKATRSGVLTLDDVELTEPVTISIDSYRALAAAAWEYADGAGT PVTCPDITVVDNEDPAGLVSQPEPVAAADEDNFYDVAADADKLPEPGASTPAFLPGEEEL EELLERTADLDEQA >gi|292819940|gb|ACYT02000075.1| GENE 59 61965 - 62129 94 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIITTLETTSLATVGAFAIAITPLRLALLVSTTAEFAASSSLFCHGVYPLFLRR >gi|292819940|gb|ACYT02000075.1| GENE 60 62263 - 62532 102 89 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCCGGVLLSHNLSVAVPLALPGLASRFGMGAGRFPGAMTTTSFGVQHAPPWCCGGGCGLI VVCIVVAAVVLVFLVHPNGVLGCCLVLAH Prediction of potential genes in microbial genomes Time: Tue May 17 07:17:15 2011 Seq name: gi|292819938|gb|ACYT02000076.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.10, whole genome shotgun sequence Length of sequence - 871 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 870 743 ## gi|154508399|ref|ZP_02044041.1| hypothetical protein ACTODO_00896 Predicted protein(s) >gi|292819938|gb|ACYT02000076.1| GENE 1 3 - 870 743 289 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508399|ref|ZP_02044041.1| ## NR: gi|154508399|ref|ZP_02044041.1| hypothetical protein ACTODO_00896 [Actinomyces odontolyticus ATCC 17982] # 1 289 1082 1371 1613 418 94.0 1e-115 AGDEPVEAAPAADESAAGPQKTKDSDEPDPLSLDAAMGRLAAWGATSGKLSTRNSPAKAP KKAAQKEAPASESTQQGAPATETPKPRPLTEGPILDALAHAVRVLRGVDLSEADLAHARA HLPDHLRMTFVVTDASGKELGAGKDLAYLQRSLASDANKAVRTAVRAALEEAGEKQARRN KRGRGASEKAAARGGEDSSTCTSASNVGAQSAAGKGTHAPKDAQASAPAQDPAFHADGVT QMPTLPRSITQTSGTMTLRAFPALVPQGSTAAPAAGVRVMASAAEADRE Prediction of potential genes in microbial genomes Time: Tue May 17 07:17:28 2011 Seq name: gi|292819937|gb|ACYT02000077.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.1, whole genome shotgun sequence Length of sequence - 304 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue May 17 07:17:47 2011 Seq name: gi|292819874|gb|ACYT02000078.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.11, whole genome shotgun sequence Length of sequence - 60841 bp Number of predicted genes - 55, with homology - 54 Number of transcription units - 26, operones - 16 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 5 - 643 765 ## COG1643 HrpA-like helicases 2 1 Op 2 . + CDS 679 - 1146 279 ## Bcav_0212 protein of unknown function SprT 3 2 Tu 1 . + CDS 1279 - 1812 940 ## COG2236 Predicted phosphoribosyltransferases 4 3 Op 1 . + CDS 1935 - 2498 786 ## COG1072 Panthothenate kinase + Term 2505 - 2533 -0.9 5 3 Op 2 . + CDS 2586 - 3914 1371 ## COG0785 Cytochrome c biogenesis protein 6 4 Op 1 . - CDS 3996 - 4511 522 ## COG0394 Protein-tyrosine-phosphatase 7 4 Op 2 . - CDS 4508 - 5251 668 ## COG0775 Nucleoside phosphorylase 8 5 Op 1 . - CDS 5355 - 7985 3281 ## gi|293193526|ref|ZP_06609796.1| conserved hypothetical protein 9 5 Op 2 . - CDS 8056 - 9018 950 ## COG3764 Sortase (surface protein transpeptidase) 10 6 Tu 1 . - CDS 9140 - 10780 2868 ## AAur_1909 putative surface protein + Prom 11163 - 11222 1.6 11 7 Tu 1 . + CDS 11438 - 13159 1643 ## COG1760 L-serine deaminase - Term 13465 - 13516 17.0 12 8 Op 1 36/0.000 - CDS 13540 - 16074 2797 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 13 8 Op 2 . - CDS 16104 - 16871 258 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 17142 - 17182 -0.2 14 9 Tu 1 . - CDS 17212 - 17664 -46 ## gi|293193532|ref|ZP_06609802.1| conserved hypothetical protein 15 10 Tu 1 . - CDS 17959 - 19701 2262 ## COG3044 Predicted ATPase of the ABC class - Term 19705 - 19759 15.1 16 11 Op 1 . - CDS 19824 - 20297 459 ## gi|293193534|ref|ZP_06609804.1| conserved hypothetical protein 17 11 Op 2 . - CDS 20421 - 20891 562 ## gi|293193535|ref|ZP_06609805.1| conserved hypothetical protein - Prom 20926 - 20985 2.5 18 12 Op 1 . - CDS 21011 - 21730 589 ## gi|154508383|ref|ZP_02044025.1| hypothetical protein ACTODO_00880 19 12 Op 2 . - CDS 21743 - 22243 425 ## gi|293193538|ref|ZP_06609808.1| antigen family protein - Prom 22276 - 22335 2.6 - Term 22357 - 22404 16.0 20 13 Op 1 18/0.000 - CDS 22424 - 24580 3372 ## COG0209 Ribonucleotide reductase, alpha subunit 21 13 Op 2 11/0.000 - CDS 24550 - 24966 329 ## COG1780 Protein involved in ribonucleotide reduction - Term 25150 - 25183 3.6 22 13 Op 3 . - CDS 25197 - 25448 489 ## COG0695 Glutaredoxin and related proteins 23 14 Op 1 . - CDS 26855 - 27787 1284 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily 24 14 Op 2 . - CDS 27816 - 28391 696 ## COG2246 Predicted membrane protein 25 15 Tu 1 . + CDS 28466 - 30868 2023 ## COG1770 Protease II - Term 30860 - 30907 18.7 26 16 Op 1 . - CDS 30944 - 32287 887 ## gi|293193546|ref|ZP_06609816.1| hypothetical protein HMPREF0970_02171 27 16 Op 2 . - CDS 32443 - 33798 680 ## gi|293193547|ref|ZP_06609817.1| conserved hypothetical protein 28 16 Op 3 . - CDS 33826 - 35175 755 ## gi|293193548|ref|ZP_06609818.1| hypothetical protein HMPREF0970_02173 29 17 Tu 1 . - CDS 35353 - 36690 599 ## gi|293193549|ref|ZP_06609819.1| conserved hypothetical protein 30 18 Tu 1 . + CDS 36868 - 37935 930 ## COG0328 Ribonuclease HI + Term 38158 - 38213 0.3 - Term 38245 - 38292 8.4 31 19 Op 1 34/0.000 - CDS 38452 - 39219 529 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 32 19 Op 2 17/0.000 - CDS 39207 - 39884 919 ## COG0765 ABC-type amino acid transport system, permease component 33 19 Op 3 31/0.000 - CDS 39865 - 40524 926 ## COG0765 ABC-type amino acid transport system, permease component 34 19 Op 4 . - CDS 40612 - 41514 1442 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 35 20 Op 1 8/0.000 + CDS 41762 - 42520 836 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 36 20 Op 2 . + CDS 42517 - 42846 441 ## COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) 37 21 Op 1 . + CDS 44036 - 45346 1666 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 38 21 Op 2 . + CDS 45377 - 45895 311 ## gi|293193562|ref|ZP_06609832.1| conserved hypothetical protein 39 22 Tu 1 . - CDS 45978 - 46601 677 ## gi|293193563|ref|ZP_06609833.1| conserved hypothetical protein 40 23 Tu 1 . - CDS 46739 - 47059 251 ## gi|293193564|ref|ZP_06609834.1| ABC transporter, permease component 41 24 Op 1 . + CDS 47517 - 48716 963 ## gi|293193566|ref|ZP_06609836.1| surface antigen 42 24 Op 2 . + CDS 48713 - 49156 284 ## gi|293193567|ref|ZP_06609837.1| conserved hypothetical protein 43 24 Op 3 . + CDS 49153 - 49698 367 ## gi|293193568|ref|ZP_06609838.1| conserved hypothetical protein 44 24 Op 4 . + CDS 49691 - 50380 542 ## gi|293193569|ref|ZP_06609839.1| conserved hypothetical protein 45 24 Op 5 . + CDS 50377 - 50745 340 ## gi|293193570|ref|ZP_06609840.1| conserved hypothetical protein 46 24 Op 6 . + CDS 50795 - 51046 192 ## gi|293193571|ref|ZP_06609841.1| conserved hypothetical protein 47 25 Op 1 . + CDS 51166 - 52128 1772 ## COG0208 Ribonucleotide reductase, beta subunit 48 25 Op 2 . + CDS 52109 - 52330 61 ## 49 26 Op 1 5/0.000 + CDS 52546 - 53247 976 ## COG1716 FOG: FHA domain 50 26 Op 2 7/0.000 + CDS 53252 - 53755 687 ## COG1716 FOG: FHA domain 51 26 Op 3 4/0.000 + CDS 53757 - 55055 1592 ## COG0631 Serine/threonine protein phosphatase 52 26 Op 4 19/0.000 + CDS 55055 - 56434 2024 ## COG0772 Bacterial cell division membrane protein 53 26 Op 5 4/0.000 + CDS 56438 - 57889 1805 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 54 26 Op 6 7/0.000 + CDS 57901 - 59943 1739 ## COG0515 Serine/threonine protein kinase 55 26 Op 7 . + CDS 59916 - 60840 1126 ## COG0515 Serine/threonine protein kinase Predicted protein(s) >gi|292819874|gb|ACYT02000078.1| GENE 1 5 - 643 765 212 aa, chain + ## HITS:1 COG:VC1382 KEGG:ns NR:ns ## COG: VC1382 COG1643 # Protein_GI_number: 15641394 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Vibrio cholerae # 5 208 1111 1306 1309 81 30.0 8e-16 MLAASPYADTADLVADAQLASALALVDELNTPADVRDPEAFETLVADARDAHEDRVYQIL SHVVRALEASAEADAAVRSHPQASLEETTRDVAAHGKTLLYEGFVSATPASALPHLARYL RAGAVRIERAASSPGARARDLEDMDRIHQAEDEIAATREALERRPYDARRDAALTQARWM AEELRVSMFAQTLGTPNKVSMKRLLGVLAGAR >gi|292819874|gb|ACYT02000078.1| GENE 2 679 - 1146 279 155 aa, chain + ## HITS:1 COG:no KEGG:Bcav_0212 NR:ns ## KEGG: Bcav_0212 # Name: not_defined # Def: protein of unknown function SprT # Organism: B.cavernae # Pathway: not_defined # 1 154 14 165 173 114 46.0 1e-24 MDASGLVDWRFRFDRAKRRAGACTHTSRTISLSGPLTDLYDADTIRGIILHEIAHALIGP SHGHDAAWKRAARTLGAPDSARLPSFLPSPDAPWVGTCPRCGATRRLYRAPRRVSSCGVC SRAFNPALILTWEHRGKAASPGRAYERELASIRRR >gi|292819874|gb|ACYT02000078.1| GENE 3 1279 - 1812 940 177 aa, chain + ## HITS:1 COG:Cgl1433 KEGG:ns NR:ns ## COG: Cgl1433 COG2236 # Protein_GI_number: 19552683 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Corynebacterium glutamicum # 14 177 4 156 158 153 51.0 2e-37 MGTTASPDATTAPDREVLTWEGFGDASRELTQQIVDSGWIPDLIVAIARGGLIPAGAIAY AMDVKAIGTMNVEFYSGIGETLEEPQLLPPLMDISAMDGKRVLVVDDVADSGKTLKMVMD LIDEHGLSLDGSAAVRVEARSVVIYKKPVSIIEPDYVWAYTDKWINFPWSTLPVIKP >gi|292819874|gb|ACYT02000078.1| GENE 4 1935 - 2498 786 187 aa, chain + ## HITS:1 COG:SMc02167 KEGG:ns NR:ns ## COG: SMc02167 COG1072 # Protein_GI_number: 15964232 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Sinorhizobium meliloti # 3 185 21 203 206 110 39.0 2e-24 MRVLGLTGPPGTGKTTIAAELARALPEAGIPVAGLAPMDGFHMSNAVLAARRIADHKGAP DTFDVGGYVALLGRVRRADGVVLAPDYRRDLHEPIAASLPVEVDGVVITEGNYLGLELPG WADVRGLIDLLVFIDTPFEELASRLIERHMSFGRDRADAAHWVRTVDAANMALVDRTKER ADLVLSL >gi|292819874|gb|ACYT02000078.1| GENE 5 2586 - 3914 1371 442 aa, chain + ## HITS:1 COG:MT2942_1 KEGG:ns NR:ns ## COG: MT2942_1 COG0785 # Protein_GI_number: 15842416 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis protein # Organism: Mycobacterium tuberculosis CDC1551 # 4 273 119 366 399 187 42.0 4e-47 MFLLLGLLGGFITGISPCILPVLPALFLGAAGGRTSNEAPQSSEAGKTGIDPSLFRVAPG VNLGGEAPKKAAVKADGSDSVTRRPVLIVLGLVTSFMIITVAGSALLSLLNLPQALIRWT GIVLLLAVGIGMIVPKIMEVLERPFTRLAPRTTGDSAGFGLGLVLGAAFVPCAGPVLTSI IVASSSGQITWHIVGLAISFAIGVSIPLMIVAIAGSGVAARFLKTRQHPLRIAAGLAMIA LALGIATDAPMALQRMIPDYTASLEASTEGACEDGACEPEHEVQASTDFAQCARSGAKDC GTLPAIGATEWLNSLGEPHGTVTLVDFWSSSCVNCAREIPEVERIYEKYKEAGLVVIGVH SPQQAHEREASVVSGAASRLGITYPVALDPELEAFKAYGANAWPTHYLAGPDGQLRSMGR GTSGLEEQIRTLLTEAGASLPN >gi|292819874|gb|ACYT02000078.1| GENE 6 3996 - 4511 522 171 aa, chain - ## HITS:1 COG:NMB1267 KEGG:ns NR:ns ## COG: NMB1267 COG0394 # Protein_GI_number: 15677135 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Neisseria meningitidis MC58 # 6 160 2 139 151 86 35.0 2e-17 MNTNDRPTRILMVCTGNICRSTMAHAVLEQAAARAGVDVIVDSAGVSDEEQGNPIDRRAA RVLRDAGYTVPDHRARQIRAGELGEWDLILAMTSRHLNVLERLAERVGVEHEGAPASAAE LGQGPRVCLYRDLDPEGSGDVPDPWYGGHQDFLDTLEVIERVTPQILALVR >gi|292819874|gb|ACYT02000078.1| GENE 7 4508 - 5251 668 247 aa, chain - ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 51 247 31 228 228 122 35.0 5e-28 MNLRMPERVRVDAVIQAAMDMEAAPFLHELAPLGDAETPDAVLGGSRMTQRFALGELEGK SVLVVTSGIGLANAACATARALALVDTPVVIAAGTTGGLARDISVGDIAAGTTAIYGQAD ATAFGYAPGQIPQMPVDYTSSEAAAARLDDLSDVISHRVRIGQVLSSDSFCTQEHAEPMR RRFPDAIATDMETCAMAQVCWSAGVDWISLRAVSDLCEPSADQAFHMDGKRAASHSADAV AAYLRML >gi|292819874|gb|ACYT02000078.1| GENE 8 5355 - 7985 3281 876 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193526|ref|ZP_06609796.1| ## NR: gi|293193526|ref|ZP_06609796.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 876 1 876 876 1640 100.0 0 MQYRPNARIVRHARAAITPRRYGVRVLVAAALAALVAMPGLLASPTQAGPTLESAGSDEV VFDRTEGRIGPAILNDSPTDRTTAVADHAFFGVVRGMSVYDSRDRNQYSQAHQPGVAQRW LKADVAKRGDYWSYITRGVAWDYHINPYGYQGEYRDNVISASTTSALGYKPNNPGKSALN STFLIGTVRHNNFPIWSAIHYVHASFDIRIGDLEESFPFDQHETTNDNDTTAVANQGGAY RYYSQAYSARSCPAEAPYYALIRGYGENTWFCFQHVGPGYGNYDIYTNQPNYYPNYVDVP GQTPESDDVLTVNKTTSDRTLVVDGIPYRLFLWGFVPSADGNCPAEPPAGSAPVNTFTTK ENQTSYGCLYGEFRQERFLRIAKNVTEDSGAPGEEIPAFNFTTLPAGDWKAPEGAPLPNE AQADTYISPGSFSDFSLKPTAYGNGGTVLSGYQSFIPGKSQFIVAETGPTIPGRNPIAPG QPGYYGPWPVSDDPNAAQWKLSEVTCVNGVGDRVNVTRDPATGGIDFSAVPPASSAKALP VTCTFTNQKQAPKIRIEKSIESVEDAFTPNITVTYRITATNDGTLTGTTGRLADSPSFAP GLKERSVRIATTLEGLDSATPTRYGPYTLTEGTDLEPGAQATWYIRMNVARNKRTPGYSE PALECASDNGHLTPRRGLYNSVSGPYDYDGSANNEACAPVRPRYIRIEKAGTQPVGTPND DGTYPLKGAAFAIYDNAELKGTPVSVVDGGPTFLSAPLAPDTDYWLVETRAPAGHALLPR PVPFRISVGNDAEATTVLTAEFGPDEGFSSVRVLPAQPGVSGEAGAPGIRIVDTQVGTLP VAGGYGVYPHVAAGVGMIALAGACMWARKRQRVSQS >gi|292819874|gb|ACYT02000078.1| GENE 9 8056 - 9018 950 320 aa, chain - ## HITS:1 COG:SP0466 KEGG:ns NR:ns ## COG: SP0466 COG3764 # Protein_GI_number: 15900382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pneumoniae TIGR4 # 32 308 3 277 279 163 35.0 4e-40 MSKQAPDQSKTPLKVRLLTIAPPVLLLAGILVLLYPVLATQYNNQRQSQIAEQFSAVAEE VGPDAVAESLSRADEYNRAAAEAPILDPWLDAQRPDTVQYQEYLSQLDLNDVMATVKIPS IDVNLPIYHGTDTATLDKGVGHLFGTALPVGGESTHTVLTGHTGLGTATIFDELTSVQMG EFFYIETAGRHLKYQVTDIRVVLPNETESLNKVEGKDLATLITCTPYGVNTHRLLVTGER VPMDDGDAQAEAEQVHSRVLQPWMIAVLASVVVILCVAGWIWLRSRKRAREALEAPHPPE SLAVVEDAAAPNEDEASIGE >gi|292819874|gb|ACYT02000078.1| GENE 10 9140 - 10780 2868 546 aa, chain - ## HITS:1 COG:no KEGG:AAur_1909 NR:ns ## KEGG: AAur_1909 # Name: not_defined # Def: putative surface protein # Organism: A.aurescens # Pathway: not_defined # 27 539 13 489 493 218 33.0 5e-55 MSTTKTRRSVSLLAAFAVAAGALALPAAASQATPTFGLAATTERAPSLVDLDATKTGSIT IHKLVKQDDNGTKEGNGLLDPSATGAPLAGATFTVEKLTSVDLTKQEGWEKLANYRKGKG DEKISANAAAIEAARADGVGTPVSQTTGADGLATFNNLALGAYIVTETQTPAGYTGSRPF IITVPMTHPTELNKWVYDVHAYPKNAKVNVEKEVDDAQTPAVGSPISYTITADVPDAPVV DYYNVVDQYDKRVDLPEDQIELRMVEAKDGDVPLVKGEDYTLIPAVGKDGKTNFWTAEFT EAGRKKMIDQRKSNDTKIVMSLEGTLKEKIGDEGLVENKAILLPGAPANNWKPGSGEVPP PDYPNAKVVSKFGKVTITKTSSVDETKKLQGAEFQVYKCKPTTKPANNFESVDASLDTKL TVDGKDTFVTDDQGKVTIDGLRNNDWEDNEAVADPGYYCLVETKAPDGFELQSRPIAFQI LASNSTKDNKYTLETTVKDVPKNGGFNLPLTGAAGVGVLIGTGALLVAGSGAIVLANKRR KEQADA >gi|292819874|gb|ACYT02000078.1| GENE 11 11438 - 13159 1643 573 aa, chain + ## HITS:1 COG:PA2443 KEGG:ns NR:ns ## COG: PA2443 COG1760 # Protein_GI_number: 15597639 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Pseudomonas aeruginosa # 39 573 3 458 458 424 49.0 1e-118 MDLRPVALDTPVTTYDPSRPTPAAIVSGHIAAHDAPHPLSVFDMFRIGIGPSSSHTVGPM RAGLAFTTELTTLPPPCHITIDLFGSLGATGRGHSTDRAVLLGLAGYDPETVDISTVESI LPTLASTGTLTLPSGAQVTLDVARDIRFVARTVLPYHVNALTITATDADTHIILRRTYYS VGGGFVMTQTNDDTDNPEVSSLASGQTSVGIDVPAPYPFTSGSQLLAQCDAEGKSIAELV RANEEAVRPRETLDAYLDRIADTMFDCVDAGTSATGILPGGLDVPRRAQALAGKLARRLL GPSAPATAETGQGGQGDARAWVSTTADPMRAMDWVNLFALAVNEENAAGHRVVTAPTNGA AGVIPAVLGYLVTHCPETGSTPGVAAGPDTRDGSIAPLSHIRLTDSHAGATHEDCDDGDE ETFRERRRTLVHDFLLAATAIGALIKTNASIAGAEVGCQGEVGSASAMAAAGLAQALGGS PQQVENAAEIAMEHSLGLTCDPVAGLVQVPCIERNAIAAVKAINAARMALWGDGRHTVSL DVVIETMRQTGNDMLSKYKETSEGGLAVNVVEC >gi|292819874|gb|ACYT02000078.1| GENE 12 13540 - 16074 2797 844 aa, chain - ## HITS:1 COG:Cgl2500 KEGG:ns NR:ns ## COG: Cgl2500 COG0577 # Protein_GI_number: 19553750 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Corynebacterium glutamicum # 11 841 14 851 853 165 25.0 3e-40 MSATNSLLSANLRSHGRRYISTGLAVAISTAFIVITLIVMTAMTAGLTSGVYSQYRGGTI VVSQNADATGESIQRAEEILRSTSGVTAIKHMAQWPADAQTDATRGRLYVSPLAPKPFAG LDLSAGDAPTADDQITIPEHTASTLSLKVGDTVRVRAGFTEGAYQTLTIVGTTRSNTISM GVPASYVTDGGFSALFERTASGQFIVATSGADTDSNANPPSATQDEWVATANSAISTVSG VTVTSVHKAIQDDLEQARLGASMTMGIMLIFPAIAALVASIVVSSTFRVVLTQRTRELAL LRTLGATRRQVRSLVTREALAIGAISSAIGVALGWLIGALAEAGTGLASSVGAALASASV WQLAFTWLGATLFTTLVGVFPARAASRVAPVAALAPVNEAGAAARKKHTVRFIIGALIAV AGCAAVAAAWRSDSGGTKFLGAFGGSLLALLGALLVASVLLPALTRAFGAAFPGTLSAMA RENTTRNPGRTSATGTAIIIGVTLVVTIMVGAASVRTTLTNAVNDARPFDLMAVSTTGAV TDDQQAAIAATDGVAATVAQYAAPGTLTTTSGAPAYAGPEGAGSEDEAQASSVMITGEPD YAGVTHSTVTQLGDNQVRVGDEALAGQTLRLCADTCVDLSATYDKNGSVGEAQVSEKTLR SIASSLERQAVIIKMADGADAETVQSALLKDSHLSVNGSALERQMYTKIIDQLMLVLVGL LGVSVLVSLVGVANTLSLSVAERTRENGLLRALGLTRHQMKSLLAFEALFLSLTGVLIGV GMGVAFGWVGVMSLPIEGATAVLSVPWLQLVGVCVVAIVSALIASWLPGRRAAKVSPSEA LAMD >gi|292819874|gb|ACYT02000078.1| GENE 13 16104 - 16871 258 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 39 239 35 241 329 103 34 2e-21 MNTNTTIAQAPVADQEAPASSIVRLQGVSKIYGSGDAQVRALDDVSVGFGAGEFTAIMGP SGSGKSTMMHILAGLDAPTSGHVFVEDTDITALKDTALTKLRRDRIGFVFQSFNLVPTLD ARANILLPMRLADATPEKGWFDLIVNSLGIEDRLSHRPSEMSGGQQQRVAVARALMSRPA VIVADEPTGNLDSHSTTEVMDLLRRAVDELGQSVIMVTHDTSTAAYADRVLVCRDGRIVS DLRDVTADSLTAALR >gi|292819874|gb|ACYT02000078.1| GENE 14 17212 - 17664 -46 150 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193532|ref|ZP_06609802.1| ## NR: gi|293193532|ref|ZP_06609802.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 150 31 180 180 268 99.0 9e-71 MQFSGAEVMPVSAVPCWGRAVVVLVSMSPRCRAWCAIFFALLGLMVGVSATKFAQRAQIG PNSAFLRLLGEFFRGDVAGGAVLGELFRANWPCVGLGCDAVHFRVAAVGGFAPCEALWRR VAGVSEAWMASFPRVAAMPRCWMRTDQFCT >gi|292819874|gb|ACYT02000078.1| GENE 15 17959 - 19701 2262 580 aa, chain - ## HITS:1 COG:VCA0786 KEGG:ns NR:ns ## COG: VCA0786 COG3044 # Protein_GI_number: 15601541 # Func_class: R General function prediction only # Function: Predicted ATPase of the ABC class # Organism: Vibrio cholerae # 19 569 4 543 549 358 40.0 2e-98 MTPRYEAPSRAIAGTDADLLDQLRYADGRPYGFYKNALGAWDYGDFTLAIDHVQADPYAP PSSLRAWSTPEAMGLPEAALASSDARLAAADFIARSFDEAIRARDTRDVSIARAGTLILQ RSYATVLPDRVEVRFQVKLPARGRTILGKSAARLFDVDVPNIVMDCFDFVSEDPATTRKR SRLLGHVAAYEDYRALQGILEERSWVSFVADEALLARRSGVSETPLTGDGVVAFNAPESL RATVTLPHAGEVSGMAIPPGLTLIVGGGYHGKSTLLEAIAQGVYAHIPGDGRELVATDPT ATKVRAADGRAVTGVDISPFITHLPGGADTTSFSTENASGSTSQAASIIESLELGARTLL IDEDTSATNLLIRDTRMRDLVAAEKEPITPLVDRVTSLTEAGVSLIMVVGGSGAFLDAAD RVLMMDNYRCLDVTARAREVVADLPRLRTDAPTIWEAAPRVPAAKARVDRPRTKASGTSV LTIDRSTVDISDVAAVVDPGQAEAIAWCVRGVLEEMAGKQSMPDLMAKLGRRLASEGLDA VCKFGARSYPAFLARPRLIDVGAAINRYRGLSLREPRGES >gi|292819874|gb|ACYT02000078.1| GENE 16 19824 - 20297 459 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193534|ref|ZP_06609804.1| ## NR: gi|293193534|ref|ZP_06609804.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 157 1 157 157 217 100.0 2e-55 MSDPAYPYGANPASAQDPYSQQTPYGPAASTPYGHPEAVYRQQPAYGMPNGTAYSQPTPA YAQPYYASSHLVAYADLRSQAHLAMILAGVSFLTAFLLLSIPAMVLSFMQRRKAKRLDAP QDIMSLTNTAVVVTSICASLQLLVPLALLLAFFLSDR >gi|292819874|gb|ACYT02000078.1| GENE 17 20421 - 20891 562 156 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193535|ref|ZP_06609805.1| ## NR: gi|293193535|ref|ZP_06609805.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 156 1 156 156 256 100.0 3e-67 MSDPVNAYLAAGQEHPQQAYGYAQPAYGQQQAYGHAQPAYGQQQAYGHAQPAYGQPVYAL NPEIERIRSNASTARMLSFVSFLFGHLLLAGGMWFWTNKLVEEAKILGAPMDVMADVESA RSAAKICSIIQIAIAAAVFLFLILMVIIGATAAANS >gi|292819874|gb|ACYT02000078.1| GENE 18 21011 - 21730 589 239 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508383|ref|ZP_02044025.1| ## NR: gi|154508383|ref|ZP_02044025.1| hypothetical protein ACTODO_00880 [Actinomyces odontolyticus ATCC 17982] # 1 239 1 239 239 278 96.0 2e-73 MSDEQMPSRAIPAGWDWPQQSDGPVAPQAGAPASMWSSAPAAPQAPAPAQFAPPVGAPVN VASAAPAAQQSPYAPGHSGVTAASAAPAYGTPAPYPQQGAPAQPMPSHGQPSAYQAQPAP VAQPMQQAAATQYGVNPQAAYASQPAQPSTDQLRQLAFSRLKSNATVAIVMSFVWFFTTP VILLLANAVRAQRLCTHAQEIDAPSDVTRKVNIARGIAFGMLLLQVSLIILLIVSENMR >gi|292819874|gb|ACYT02000078.1| GENE 19 21743 - 22243 425 166 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193538|ref|ZP_06609808.1| ## NR: gi|293193538|ref|ZP_06609808.1| antigen family protein [Actinomyces odontolyticus F0309] # 1 166 1 166 166 291 100.0 7e-78 MSDPSNPYGSQPAYGTQASYGTQAAYGAQPAYGQAPVVQQPAYGTQPAYGAQTSYGAGAS YGQPMYGQVVYALNPAVERVRSNASMVRIMSFVSFVTVGPLLSFGAWFWSMNLLSEAERL GAPEDVLRDVRGARTTALICGIVGIVLFGLLIAAPFLLVWLVESTK >gi|292819874|gb|ACYT02000078.1| GENE 20 22424 - 24580 3372 718 aa, chain - ## HITS:1 COG:AGc106 KEGG:ns NR:ns ## COG: AGc106 COG0209 # Protein_GI_number: 15887423 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 718 28 728 728 1154 79.0 0 MAENYTDTGVEEAPSPELDYHALNAQLNLYDANGRIQFDADRAAARQYFLQHVNQNTVFF HDLEEKLKYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYTLKT FDGKRYLERFEDRVAMVSLYLARGDIELARSFVDEIMTGRFQPATPTFLNAGKAARGELV SCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPVMK LLEDSFSYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDIT FELARKNEDMYLFSPYDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINARRFFQTIAE IQFESGYPYIVFEDTVNKANPIKGRITMSNLCSEILQVSEASTYNDDLSYDHVGKDISCN LGSLNIAKTMDSPDFSKTIEMAIRGLTAVSDLSDIGSVPSIARGNAMSHAIGLGQMNLHG YLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETFEGFEESKYASGEFFRK YIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYNQNLQAVPPTGSISYIN NSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSNENLEYYQDAYEIGPEKIIDTYAVATQH VDQGLSLTLFYPDTVTTRDLNKSYIYAWKKGIKTLYYMRLRQMALEGTEVEGCVSCML >gi|292819874|gb|ACYT02000078.1| GENE 21 24550 - 24966 329 138 aa, chain - ## HITS:1 COG:BMEII0931 KEGG:ns NR:ns ## COG: BMEII0931 COG1780 # Protein_GI_number: 17989276 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Brucella melitensis # 1 134 1 133 135 178 62.0 3e-45 MGSVVYFSSATGNTRRFVEKLGLPAARIPLLPKDEPLRVTDEYVLIVPTYGGGNIKGAVP KQVIRFLNDPDNRVLCRGVISSGNTNFGKAYCIAGDIIAAKLGVPHMYKFELLGTPEDVS RVREGLEQFWQKTTPTQA >gi|292819874|gb|ACYT02000078.1| GENE 22 25197 - 25448 489 83 aa, chain - ## HITS:1 COG:YPO2651 KEGG:ns NR:ns ## COG: YPO2651 COG0695 # Protein_GI_number: 16122860 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Yersinia pestis # 1 77 1 77 78 108 59.0 2e-24 MSITVYSKPRCPQCDATYRALDKQGVSYEKIDVTQDAESLAFIKGLGYQQAPVVVAGEDH WSGFRPDRIKAVAAAAAPLALQA >gi|292819874|gb|ACYT02000078.1| GENE 23 26855 - 27787 1284 310 aa, chain - ## HITS:1 COG:Cgl1119 KEGG:ns NR:ns ## COG: Cgl1119 COG4667 # Protein_GI_number: 19552369 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Corynebacterium glutamicum # 22 308 10 294 298 223 40.0 4e-58 MKETPEHYPTPEESIATMVTIDDTALVFEGGGMRNAYTAALVSRLIAEGINFPHISGVSA GSSHLCNFTSRDAARSHATFVDLVDDPEFGGLKHFRKGHGYFNAEYIYERVCYPDGAYPF NMDAFLANPARTRVAAFNASRGEVRWFSKEDMSSLDTLGPIIRASSTLPVLMPPVEIEGD TYVDGALGPNGGLPFDQPLREGYRKLLVVLTRPRDYVKGPMPASVGALLRTAYRQFPSVF EGVARRPDRYNAGRRLLFELEERGQAYVFAPDNLWINNTESRRERLEATYRAGLVQAVRE MPAIKAFLGL >gi|292819874|gb|ACYT02000078.1| GENE 24 27816 - 28391 696 191 aa, chain - ## HITS:1 COG:ML0734 KEGG:ns NR:ns ## COG: ML0734 COG2246 # Protein_GI_number: 15827311 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium leprae # 57 185 24 157 228 75 33.0 7e-14 MRDEHCLHGSTAALDPVAARPRDPLPTQPGTRGQAEGGAAAASSLSLTRRLLAWVREFIQ FGMVGATAYIVDAGLFNLLQHGPLGFLAGHPNTAQFVAAATATLYSWIANRLWTYRGRTR ENATREAILFFFANACGIGISQFCLLFTHHILGFASALADNIAVYVVGFALGTAFRFFFY HYVVFTGHTRA >gi|292819874|gb|ACYT02000078.1| GENE 25 28466 - 30868 2023 800 aa, chain + ## HITS:1 COG:Cgl2542 KEGG:ns NR:ns ## COG: Cgl2542 COG1770 # Protein_GI_number: 19553792 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Corynebacterium glutamicum # 27 799 17 705 706 384 34.0 1e-106 MTDTTTRNTRPSSTPPVAPKRYGYRVRDQFGQHFDDPWDWLRDGEDPEVRAHLEAENAWA DTVTAPTREAAARLVEEVKASTALTDVTVPIREGEFWYFRRFAEGQSYATHHRAPVERDE AGAPVPLVPQPGVPARGEELLVDENEWARGQEFFRLADMYPSPDGRLIAWARDTSGDERY TWVVQEASGRVIDEAVVDAGYGFAWADDSASFIYMGVDDAWRACDAWLHRVGTPREADEL LLVEPDEGFEMGFAPSGFPGHVVIHASSSTAGRAWLWLPAHPSVRPLPLMPVRPRTLVSA DSAGDRLFIVHTGLTQEGSLAQAMLPAGGSPEALAQLGVTSSSAYSRQALADRTPGTPLP EDEPAPLAPFESWEPLRSPGPGERITDVEAHADYVALSLRSGSLTQVDVWDRREPTPTWR RVEVDAPVRTIATVPTPWKDPLRVEFQSQTVPPTVAEVLLPNTAPASSSETSALSVRTLR TREAPGWDPAEYVEERVWVVARDGAARIPVTLIHHRDARPDGTHAGWQIGYGSYEVSYDP EFETLRLPILRRVVYAIAHVRGGGEMGRSWYEDGKELVKEHTFTDFIDVADWLVDSGWVA PGRLVAEGRSAGGLLMGAVTNAAPDRFRAILAGVPFVDALSTILDPTLPLTVGEWEEWGN PLTSRAVFDAMSRYTPYENVPDGALLPAVMATTSVNDTRVEFVEPTKWVQRLREATGQVP STDEAGAGQRCNCCDSGTGEVSVSGEASHGLVAARDPFERPIILRTEMVAGHAGPSGREG RWAARCEEFAFALGQVGITL >gi|292819874|gb|ACYT02000078.1| GENE 26 30944 - 32287 887 447 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193546|ref|ZP_06609816.1| ## NR: gi|293193546|ref|ZP_06609816.1| hypothetical protein HMPREF0970_02171 [Actinomyces odontolyticus F0309] # 1 447 15 461 461 867 100.0 0 MSTHNGEKHETGADEQEHGHPKKPKRIRRWALLVVVLSVAALAWSCVFHGGLTRKPASFH ATNDAVVAVRLGSGWSTVAEDFRYNDYDGWIVLLDADGRGQVAAVNNVLHGDVLWNERGV FYGSPSHDFLTTEAGTQGFERRYRSSDERQRYALPDGALAVVSDEGFGFVVGTVHVDGRV TRVRNEKTGGAVGQCGSRILAITGTKQSPGISAAAFAAYAARSGDEKPPTTLAAVVQLND HDGEESPVLAVAPMIDGLGSRQHMFACEGDVITMPTELSDEAAASSHGSTSERQRTMVLE RWDLSTGERSIIPVLDEAGNPLELNDEQGVSEYEAIRVGSEYRFVSSGGDAFAVDLTSGQ GRHLFSLDVPWSEYLSVFQVTETGVYMLKDRGVDRVVTLSYRPWEGGEWRDIFTTRDLAY YLKEGVLTRTLDIQSFALRPGWDGGAQ >gi|292819874|gb|ACYT02000078.1| GENE 27 32443 - 33798 680 451 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193547|ref|ZP_06609817.1| ## NR: gi|293193547|ref|ZP_06609817.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 451 9 459 459 874 100.0 0 MSTHNGEKRETGADEQEQGSSKKPKRSRRWAFLTLALPIALLAWSCAPKAPLPVTPTSKL AIGDAVIAVQLGEAQSQSGLEAPIQDNLVALVDVHGEQDIVRIGNQWEGRILWSDRGISF GAEQWEYQTTENGTSSQETKGWRASNVQRYELSDGRFIVVSYEMDLGYRVDTIELDGSVT SVSTPGTRGDMGQCGDRILSIVDTKQLWRRKQEALEAYAAQSGNDGAQPEELSVVVQLND RDGDTPRLVGVAPMIDGLVSGQREFACEGDVITMPSVQTGDSRDVRVMADGGETGTMVLE RWDLSTGQRTIIPVIDEQGNPIEIDREHSIFGYRGIQVGDEYRFISEGGDAFAVDLRSGR GRFLFSYDGTRINQRMVYQVSETGVYALEGRREDHNVTLSYRPWDGGAYRDVITMDKLAD YVWLEGDILPSGHWRRIQSFSLRPGWDGGAQ >gi|292819874|gb|ACYT02000078.1| GENE 28 33826 - 35175 755 449 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193548|ref|ZP_06609818.1| ## NR: gi|293193548|ref|ZP_06609818.1| hypothetical protein HMPREF0970_02173 [Actinomyces odontolyticus F0309] # 1 449 1 449 449 850 100.0 0 MEPHTDEPLNNGTRARNRKGSLSRKGVRRSGVGAAALSIVMLLSGCLSLASLDEKPIDKL TTGEAVIALRLGGAEASAALPGGTGDNWIVLLDFQGRGQAGHVERGERGDIAWTELGVSY GVQAEDFLTTQEGTQRIPRVGDRSVEYFRFALPDGRIEVISAARGSGIRADIIERDGTMT SVETDDKSGGFGLCGSRVLAIMNTEVSQSMKSAAFEVYAAQSGGEGSEPEDFSVVVQLDD PAGATPRILAAAPMIPGLRSVQHLYACEGNLLTAPSIQVDDPIGARGSSVVAARGTLVLQ RWDLSTGQRSVSPVLDEAGNAIHLNEDLDIYGDKAILVGDEYRLISRHGHAFSINLTSGQ GRHLFSIPEQVGQGDMVFQVTESGVYFLTDSSREHAVTLSYHPWDGDDSRVVLSTGSLEG YLRVRKLFSGGQRAIESFALRPGWDGGAQ >gi|292819874|gb|ACYT02000078.1| GENE 29 35353 - 36690 599 445 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193549|ref|ZP_06609819.1| ## NR: gi|293193549|ref|ZP_06609819.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 445 1 445 445 875 100.0 0 MKPHTDEPLNNGTRARNRKGSLSRKGVRRCGVVAAALSIVMLMSSCMSQGAVTEKRADQL SLGDAVIAVRLSQGKFSAGLPDPPNDNWIVLLDAQGRGQATRIENKRGSDVMWTERGLSF GAPDKEYVTTDQGTQEIDVKHSWSSEYQRFSLPDGRIAVVDLSDGIRVDTIHPNGRIETT EIPDTSAPVGQCGQHIVGITDTEESESIRSAAFEAYAAQSGGEMPENVAAVIQIDEPTGD VPRLLAVAPAIDGLVEGWMSVPCDGNVITVLSLQQDDPAAVRSGKRNSLEGVLVLQRWDL STGQRTIIPVLDEAGQPIETDQDNNLYGVRAIRVGDEYRFVTKKGDAFAVDMTSGNARHL FSIPSEKTFIPAVFQVSETGVYALEQNDDEDVLTLSYQPWDGGGKRVLLTTGTMSRYLVE RNLLMGYRRSVESFALRPGWDGGAQ >gi|292819874|gb|ACYT02000078.1| GENE 30 36868 - 37935 930 355 aa, chain + ## HITS:1 COG:ECs0210 KEGG:ns NR:ns ## COG: ECs0210 COG0328 # Protein_GI_number: 15829464 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Escherichia coli O157:H7 # 8 137 10 141 155 113 47.0 5e-25 MTITAAADGSSLGNPGPAGWAWYVDEDTWDAGGWPQGTNNLGELTAILRLLEATAETGEE LHILADSQYAINVVSKWRLGWKKRGWTKADKKPIKNLELIQEIDRAMEGRRVTFEWVKGH AGHRMNERADDLARACAEAYQAGRMPEPGPGFGGGASRGAASADQASSDQASGDQPDEGA TTVAASVEPHNMPATTDALGSAPASHDASTDEAATSTFRSHPSVFSTPTEANEPAEAAPA SSVSEPAMTTEDAIAREREFILAWTGCDEEALAAMTDERTTRIWPGGGATTSLAGPSPAS PSIGRIDAHDLGGSFLTRYRVRWEGGASLESSVWAPATSGEGRLIMVHHQSTLIS >gi|292819874|gb|ACYT02000078.1| GENE 31 38452 - 39219 529 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 10 251 2 245 245 208 44 7e-53 MAELTSDPQLRLVDLDKTYPGGHHALRGVSLDVSDGEVVVIIGPSGCGKSTLLRTINGLE PINSGQILFDGNDLAAPGVSWPEVRRRIGMVFQSYELFPHLTVMGNLTLAPGLVAGESRA DASARALKLLERVGLADRADDYPRQLSGGQRQRVAIVRALMMDPEILLLDEVTASLDPEM VREVLDVVLELARTGMTMLIVTHEMGFARAIADRIVFMDEGRIVEVDPPRKFFADPASDR ARKFLDIFSFEGAKL >gi|292819874|gb|ACYT02000078.1| GENE 32 39207 - 39884 919 225 aa, chain - ## HITS:1 COG:SP0710 KEGG:ns NR:ns ## COG: SP0710 COG0765 # Protein_GI_number: 15900608 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 1 225 1 225 225 265 63.0 5e-71 MADLGINVIFEGRNLVRILEGLGVTVGISALSVVLSLVLGVFVGLGMRSRWRPLRWLMQI YLEFVRIMPQLVLLFVAYFGLTRVAGINLDGITASVLVFTLWGGAEMGDLVRGALIAIPR HQYESAYALGLTPRQTMRRVILPQTLRRLAPPAVNLITRMIKTTSLVVLIGVVEVLKVGQ QIIDANRFNYPTASLWIYGLIFALYFLICWPISLLSRHMEKTWQN >gi|292819874|gb|ACYT02000078.1| GENE 33 39865 - 40524 926 219 aa, chain - ## HITS:1 COG:SP0711 KEGG:ns NR:ns ## COG: SP0711 COG0765 # Protein_GI_number: 15900609 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 21 219 1 199 206 211 60.0 8e-55 MNLDILARYAPLYVDAAILTLRIAAIGIVGSLAVGLLVAAIRQYRIPVAAQIAAAYVELS RNTPLLVQLFFIYFGLPRVGIKWSGETCAIIGLIFLGGAYMAEALRSGLDSIATIQWESS AALGLTRTQTLRHVALPQAIATSVPPLAANVIFLIKETSVVSVVALPDLVYVAKDLIGMS YNTSEALILLVIAYLVILLPVSIAARLIEKKVRRGGFGN >gi|292819874|gb|ACYT02000078.1| GENE 34 40612 - 41514 1442 300 aa, chain - ## HITS:1 COG:Cj0982c KEGG:ns NR:ns ## COG: Cj0982c COG0834 # Protein_GI_number: 15792309 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Campylobacter jejuni # 8 293 2 277 279 259 48.0 6e-69 MSATHARKKPFLRLATAAVAMVAALGMAACSGGASTSSSSSSSAQVGDRSPEQIKEAGEI VIGIFSDKAPFGYIDADGKPAGYDVVYGDRIAADLGVTAKYVPVDAAARTEVLASNKVDI TLANFTVTPERAEKVDFANPYFKVSLGVVSPTSAEITDVSQLAGKTLIVTKGTTAEAYFE ANHPEVKLQKYDQYSDAYQALEDGRGDAFSTDNTEVIAWAIQHPGFSVGIKSLGETSYIA AAVKKGNTALLDWLNNQLVELGQENFFHKDYEQTLAPVYGDAATPDDLVVEGGVDTTSTN >gi|292819874|gb|ACYT02000078.1| GENE 35 41762 - 42520 836 252 aa, chain + ## HITS:1 COG:Cgl0259 KEGG:ns NR:ns ## COG: Cgl0259 COG1296 # Protein_GI_number: 19551509 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Corynebacterium glutamicum # 18 232 17 231 239 213 51.0 4e-55 MPKLPRTVNVPVPASPTRLEILEGLRITAPVAAGYIPLGLAYGVLVIQLGLPWWLAPSLS LAAYSGSAELLVVTLAAQNTPLAVIAVTMLLVNFRLLFFAFSFPLHVIEGRVARLFSMYA LVDEAYALTAARPNGWTKPRLLAMQVLFNLTWVISSLVGVSAGSLIPTQIEGLDFALTAL FITLTLDAARTRRELPSILLSGVSFAVAMVVAPGQRLLVALLLFVACLVVRHVLHRRGIL HSAAEVAEGGAQ >gi|292819874|gb|ACYT02000078.1| GENE 36 42517 - 42846 441 109 aa, chain + ## HITS:1 COG:Cgl0260 KEGG:ns NR:ns ## COG: Cgl0260 COG1687 # Protein_GI_number: 19551510 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permeases (azaleucine resistance) # Organism: Corynebacterium glutamicum # 1 107 1 106 108 77 46.0 5e-15 MTPTLGYLLALLAITFVIDFTLRALPFKILEPLRDSRFVSDMAVWMPPGIMLILVLSTLT QGAQEAGGRWWAALVATGVTVAVHLLSGRKLLWSVGIGTVCYVALLNWL >gi|292819874|gb|ACYT02000078.1| GENE 37 44036 - 45346 1666 436 aa, chain + ## HITS:1 COG:Cgl0575 KEGG:ns NR:ns ## COG: Cgl0575 COG0596 # Protein_GI_number: 19551825 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Corynebacterium glutamicum # 31 433 39 420 427 224 40.0 2e-58 MHTESYLHHGHTVYEHRLDVPLDHLRPTGEDNPTIQVFAREVVRKGREDAPYAVFLQGGP GYPSPRFGTFTGGWMNRLLQDYRVVLLDQRGTGQSTRMDAQALSHLDTDEEKAAYLRHFR QDQIVYDAEALRRELCGDDPWTTLGQSFGGFITTSYLSLAPQGLKASLITGGLPGLVHVD DIYRLTYERTAARNRAYFQRHPSDERTVRELCAHLADTEETLPTGERLSPARLRMIGMML GGQGNTDQLHYLLEGPWTSVRGQRKLSSQFLAAIGSQVDVAPIYGVFQEYIYACATPDLV GTATGWAADRLAEEIPGFAKDANPLDESEPFYLTGEHFMRRVFDEDPGLTPLKGVAEILA STTEAAPVYLPDVLAENTVPVAAAVYYDDMFVPRELSVETGELIGARHYITNEYQHDGSA YSGGKVVSHLLDLLAD >gi|292819874|gb|ACYT02000078.1| GENE 38 45377 - 45895 311 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193562|ref|ZP_06609832.1| ## NR: gi|293193562|ref|ZP_06609832.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 15 172 1 158 158 271 99.0 1e-71 MATSASCSCPCAGSVDPTRVAGFAAGVGATVAWYALPDYVRSRPLRGLVKAGLLGVLGWS MVAQLPEPSELPPYDDEDVDCSKSSPVAGEDPLEGITEADPAELAVLAGAALGSAMITVG VERWLFRRGEGRRAQGARFAHTRQGLALGALEAGLTALTFGAGAVREKLSKG >gi|292819874|gb|ACYT02000078.1| GENE 39 45978 - 46601 677 207 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193563|ref|ZP_06609833.1| ## NR: gi|293193563|ref|ZP_06609833.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 17 207 1 191 191 285 99.0 2e-75 MLCKARKVNGQRYCEGVTYQPLQFDAAPRPYRLGNDQLRRYNRVRAGQRTQGRVNIAIDV VTILLIVSVSAIGAIVELSSMPEPVSEKLAGLALSLILGGGLILLALLAALLIAARRWHR EWDGNEDLVIFSESHAALHAARQDGAVMTACARMKLAWFIGFLAVGGIAVATESALLAAL ASLPLAMGLLNSWRSCQALRRINGRTL >gi|292819874|gb|ACYT02000078.1| GENE 40 46739 - 47059 251 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193564|ref|ZP_06609834.1| ## NR: gi|293193564|ref|ZP_06609834.1| ABC transporter, permease component [Actinomyces odontolyticus F0309] # 1 106 1 106 106 179 100.0 4e-44 MEPALAEAYGRMLKRVTFALDKAWIFAIFAGFGCGIGYVATLRIMTDELALLFFLLYAVM SLSGYLMTFAQIACFNRVLPRGVRLTFRILRKCFPDRGAPSWTSYA >gi|292819874|gb|ACYT02000078.1| GENE 41 47517 - 48716 963 399 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193566|ref|ZP_06609836.1| ## NR: gi|293193566|ref|ZP_06609836.1| surface antigen [Actinomyces odontolyticus F0309] # 1 399 1 399 399 712 100.0 0 MPPLPATSTVPTSAGTVEFAESFTWDFPVKVDAILSLKDQCDKPIAALDEAIGDATAARG MVEHQRARLVETVVEHLTNVISAAEHALSCFRSLQSALEDYGGAVKPIRTEFEAIITDAS GAGLTVSQDGTQVTISHPANIPGGLGAFFASLRSRCEINQRKFAYAEKLFGDALAGIDPA LWESTLLPVFNKFVETYGFPTGLNARARLPGWADTMHNTLADGIESVYLQAKGAKYQAPA GIKDASPWKQITERGNLKNWKVPGVDAVKGGSRAIKTADVLRTGGKLAGRACAVLDGVVS AYDSYQSDSYHHPEMGQGEKIARAGVTGAASATGAYFGATYGAQLGAAIGAVGGPVGILA GGVIGGIIGGLGGSKLGQTVGNIVNNGMHSLINTGGSQS >gi|292819874|gb|ACYT02000078.1| GENE 42 48713 - 49156 284 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193567|ref|ZP_06609837.1| ## NR: gi|293193567|ref|ZP_06609837.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 147 1 147 147 302 100.0 4e-81 MIFWEVFGAIFGLMIIGAWYMETYLDTTFSSNSRIITSRMSSSARSQATTRPLVGLGFFI CSLGNTSYKLGFHYVMTGILTAVGILCFLIAAIYHFFPLSVPRWADARYQYMKRHGMLDE NGDPLPQFELSEDDEESADNDQGWRTP >gi|292819874|gb|ACYT02000078.1| GENE 43 49153 - 49698 367 181 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193568|ref|ZP_06609838.1| ## NR: gi|293193568|ref|ZP_06609838.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 181 5 185 185 317 100.0 2e-85 MSLSTYWLLPPRWSSCPKEEISSILNQAFGSTGDTQDQTTADNTEQDSTSPEGGVIALAV GPIDADYDFTPTLLVLASPIPASTTPAQALADSARSMSDQVPGFRMLEDCEWPARPESSH LRTGIYIQGSVPITACQWAWIHSDGGNDFLLTATATMTTPAFGDLNDDVLAIIMSLEVRN A >gi|292819874|gb|ACYT02000078.1| GENE 44 49691 - 50380 542 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193569|ref|ZP_06609839.1| ## NR: gi|293193569|ref|ZP_06609839.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 229 1 229 229 373 100.0 1e-102 MPDRPHIIIPGDVTLSFATSEGLTDDAARLAALMRTARSRLVIATTSPDASQCRQALIWM QPGPCVVARTATTPNGDTETHIYQIDNEEIPHVAAAVSPLTPNPAVFDGPPILPTAIVYA AQQGTTQQTAQLLENYSSYGPSDSAFAQALVAQRWAYTTWIREERTKKGSFVPTSTLSTF ITPAAAYRVEAPLFAPSTGPHIPIHPIYNTQLWALITYFFTLSPERSLP >gi|292819874|gb|ACYT02000078.1| GENE 45 50377 - 50745 340 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193570|ref|ZP_06609840.1| ## NR: gi|293193570|ref|ZP_06609840.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 122 1 122 122 224 100.0 2e-57 MTYRVLEWNYEEVNSIIAKLSNACLELTNTPALSTSDTGSEHDATLSKHVTALNSTRRHM AWILNGIYLGLAAATEDFMCTDDAVADVMREIQRYNDEYNHKYTPPVPTGNTQITAVTPS SS >gi|292819874|gb|ACYT02000078.1| GENE 46 50795 - 51046 192 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193571|ref|ZP_06609841.1| ## NR: gi|293193571|ref|ZP_06609841.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 83 1 83 83 156 100.0 4e-37 MIAIVGLILIGPFGLYSWYAQTYTDSSSASLWRRMSTSPQALGKSRTLVKPLVSLLFTLG GAGMLDENGDPIDLDEERSDQPR >gi|292819874|gb|ACYT02000078.1| GENE 47 51166 - 52128 1772 320 aa, chain + ## HITS:1 COG:ML1731 KEGG:ns NR:ns ## COG: ML1731 COG0208 # Protein_GI_number: 15827930 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Mycobacterium leprae # 9 320 14 325 325 493 79.0 1e-139 MATEPVFEAINWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKTLTKDEQLMTNRV FTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEIN ESFRWSNENEALQKKAEIVKSYYDGNDPEKRKVASTMLESFLFYSGFYAPMYWSSHAKLT NTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTED LYDPLGLTEDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSPNADENHDFFSG SGSSYVMGEVVDTEDEDWDF >gi|292819874|gb|ACYT02000078.1| GENE 48 52109 - 52330 61 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRTGTSEFHEARAGAREPRRLTASLSSRRTWVRPPDGGHTHIVFNGSYAVTSNRNATRPV HTLFARTQLLSHV >gi|292819874|gb|ACYT02000078.1| GENE 49 52546 - 53247 976 233 aa, chain + ## HITS:1 COG:MT1875 KEGG:ns NR:ns ## COG: MT1875 COG1716 # Protein_GI_number: 15841297 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Mycobacterium tuberculosis CDC1551 # 145 230 67 152 162 65 37.0 1e-10 MSIFDRFESAVERGVNGAFSRVFRSGIKPVDITTAIRRAMDESVQEVSASRIIAANHFSV YASRTDLTSLEASLDVLADEFAQQATEHAAANSYSLLGPITIEFIADASEPSGTLKVDAE NRRGPAAPATASSASPEHPIIDVDGEKWLLTEPVTVIGRGSEADIVVNDSGVSRRHLELR ITPTGVIATDLGSTNGSFVEGHRIDAATLLDGNQIVIGRTKILFWTHPDQSGV >gi|292819874|gb|ACYT02000078.1| GENE 50 53252 - 53755 687 167 aa, chain + ## HITS:1 COG:MT0022 KEGG:ns NR:ns ## COG: MT0022 COG1716 # Protein_GI_number: 15839393 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Mycobacterium tuberculosis CDC1551 # 5 165 4 153 155 95 35.0 4e-20 MTTDLAFTVFRIGFLVLLWLLVLAAVNTLRRDIFGTVVTPRGKGRDKATSRHKASREKRK DNKKRTSTNPLAPKDLLVTGGPLVGTILPLGEAPIVIGRSPACTLVLEDEYASSRHAALT PQSDGWWIEDLSSRNGTFIDDERLNAPRQLKIGDVIRIGQTTLELVG >gi|292819874|gb|ACYT02000078.1| GENE 51 53757 - 55055 1592 432 aa, chain + ## HITS:1 COG:ML0020_1 KEGG:ns NR:ns ## COG: ML0020_1 COG0631 # Protein_GI_number: 15826883 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Mycobacterium leprae # 8 243 5 236 237 212 51.0 1e-54 MSGNAVQFHYAARSDVGLVRSNNQDSGYAGANLLVLADGMGGPAGGDIASSVALAHLVPL DTDSHPADSMLPLLREALLDAHEELTDRSSRDRDLEGLGTTCIAIMRSGNRLAMVHIGDS RAYVLRGDTLTQVTTDHSFVQYLVDTGQITPEEAEHHPNRNVVLKILGDAQADVAPDETI REAVVGDRWMLCSDGLSGVVSPETIGQVMADFKDPGECAEELIRLALLGGGPDNITCVIA DIVPAGTFPPAPPQIVGAAAIDRNAKSRGGDGAAARAAALGSSASGTPSDEAEAPAELKP RSSWWTPVFVSLVTVLVVAASWMSWKWTQTQYYAIGQDGYVVIYQGIPQSIGPWQLSHAV EVTNVALSDLAPVDRQRLDTPVLRSSRADIDSYIEGLRRSVVHPDTPSSPTPQSGAPQSG EAQSGAQSGGAS >gi|292819874|gb|ACYT02000078.1| GENE 52 55055 - 56434 2024 459 aa, chain + ## HITS:1 COG:MT0020 KEGG:ns NR:ns ## COG: MT0020 COG0772 # Protein_GI_number: 15839391 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 2 443 7 450 469 316 43.0 7e-86 MATVSIAPARPRRFLELTLMGLALAVGIAGYVLTSLNYTGEIPANLLTQVGVLVAIAIIA EVGVHFLAPYADPVILPVAVALTGLGLAMIYRLDLSYARRDEAVVGFRQALFVGIAIVIA AIILIMLRDHRMLRRYTYTFGALSLFLLLLPMIPGLGQETFGARVWIHLGPISVQPGELV KITLAIFFAGYLVTNRDNLAIGGRKFLGMRLPRARDLGPIMVVWLIGIAILVLQRDLGTS LLFFGLFVAMLYVATNRVSWLVIGFTLFVPAVAIAVKSFSHVQTRFNIWLNALDPEVYER GSYQLVQGLFGQASGGLMGTGWGRGYPQLVPLANSDFILSSFAEELGLTGMAAILVLYLI LIQRGLRAALTVRDGFGKLLATGLSFSLAIQLFVVLGGITRIIPLTGLTAPFLAAGGSSM VSSWITVALLIRVSDAARRPASTPAPWNSGIQPAVGVGE >gi|292819874|gb|ACYT02000078.1| GENE 53 56438 - 57889 1805 483 aa, chain + ## HITS:1 COG:ML0018 KEGG:ns NR:ns ## COG: ML0018 COG0768 # Protein_GI_number: 15826881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Mycobacterium leprae # 1 483 1 489 492 296 39.0 6e-80 MNNQIRKIFIIVLLMFALLGVGITNTQFISASSLNADARNQRTILHAAETDRGPIIVDKT AVASSQREEDSKRYVRTYSEGPLYAPVTGYFSSVGNASTGIEAAEEDVLDGQSQTLLGQR LRNLLTGQNRQGGGVSLTLNSQMQKAAAEALGNRKGAVVALDARTGAVLAMYSSPTFDPN QLASSDANAVSDAFSALSSDPNNPLLNRAISERYAPGSTFKILTTIALIENGLADPDMHM PSPVSTTLPGTATEVSNIESSTCGDGEPTLTEAFARSCNTTFVLASEQLTNQQLLDVTNR FGFGRESQIPLTVTPSVFPADADAAQLAMSSIGQYTVQTTPLQMAQVAQAIANDGQMMTP YLIDSIVDADNQVVRTNSPTDAGKPISSETASKLRAMMESVVSQPYGTGTTMALPNIAVA AKTGTAETGNGDRANAWAVGFAPADSPRIAFAVLVEGDDNDPTPHGGDVAGPIARALLEA GLQ >gi|292819874|gb|ACYT02000078.1| GENE 54 57901 - 59943 1739 680 aa, chain + ## HITS:1 COG:BS_yloP_1 KEGG:ns NR:ns ## COG: BS_yloP_1 COG0515 # Protein_GI_number: 16078640 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Bacillus subtilis # 6 272 4 273 331 183 38.0 1e-45 MTSGAGRVLGGRYTLLTPIAQGGMGEVWKARDRVSGHIVAAKVLRPELTGEELSLSRLRL EARNSMSISHPNIANTQDSGEEDGIGWIIMELVDGHPLTDYLRGGSRIEPEYLLPILVQV AMALGAAARAGVVHRDIKPANIIVRTDGMVKLTDFGISRAKGQVNLTAAGMVMGTAQYLP PEQAMGEVATPIGDLYALGVIAYEAAAGRRPFTGETQVDIAFAHVNDPVPPLPDFVPEPL ADVILHLLEKDPAKRPESGSAAVREIASAAKAMGVSVTPRPLPLPKAAQRPEEVRTPVQP SVPIVAPVRHLTRRTLPDEMLQPPSGLTPKVRATTGRHAKLPVLDEATTIAPSSAPIPIT GHHAAVPRILDEAEVPPVSRPVSAPTRVRRLHPETTGEQPPAVSGAVRSLTSTGRHAAVP APSANPPAPVSAPIPTRSTAKTAPTHPAPAPAAPVPAQAAAPKTPLPSEPQDRRAALAER LRQRVAARQAEDAAEEQRRAAVAREEERRQRELQEARERREARERREAEEAKRQATPRIP QPARSESPRRDKAATASSPRVYGTVPQPRAATPSKHQRRSVYEPQHEKAKRGPRWHELDA RSAQRIRPAAKTAYSRSVVAPPVPASRQIIRAVIIAIIVIALIALAAITIKHMLGSLMQP SAGAHIIEEVRTWQSPWPTV >gi|292819874|gb|ACYT02000078.1| GENE 55 59916 - 60840 1126 308 aa, chain + ## HITS:1 COG:ML0016_1 KEGG:ns NR:ns ## COG: ML0016_1 COG0515 # Protein_GI_number: 15826879 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium leprae # 9 292 7 284 424 297 58.0 1e-80 MAEPMAHRLAGRYEVRSLIGRGGMAEVHLGFDTRLSRVVAIKMLRRDLAQDSIFQARFRR EAQSAASLNHPNIVAVYDTGEEIIEDATGRSIAVPYIVMEYVEGHTVKDLISDGTAVPIN EAIEIVSGVLSALQYSHANHLVHRDIKPGNIMLTSDGKVKVMDFGIARALTDSQATMTQT NAVVGTAQYLSPEQARGETVDARSDLYSTGVVLFELLTGRPPFKGDSAVAVAYQHVEQIP PTPSSILSDIPDSLDRVVLKSLAKNREDRYPSAAAMLADLQRVARGLDVGAPPTDSWATE VLPAAGMA Prediction of potential genes in microbial genomes Time: Tue May 17 07:21:46 2011 Seq name: gi|292819860|gb|ACYT02000079.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.12, whole genome shotgun sequence Length of sequence - 9408 bp Number of predicted genes - 12, with homology - 12 Number of transcription units - 9, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1078 1604 ## COG2815 Uncharacterized protein conserved in bacteria - Term 1405 - 1452 -0.9 2 2 Tu 1 . - CDS 1500 - 2138 874 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 3 3 Op 1 . - CDS 2328 - 2489 351 ## gi|154508344|ref|ZP_02043986.1| hypothetical protein ACTODO_00841 4 3 Op 2 . - CDS 2500 - 3261 1138 ## COG3764 Sortase (surface protein transpeptidase) 5 3 Op 3 . - CDS 3254 - 3952 790 ## COG3879 Uncharacterized protein conserved in bacteria + Prom 3955 - 4014 2.4 6 4 Tu 1 . + CDS 4076 - 4339 375 ## BLA_0071 putative septation inhibitor protein + Term 4386 - 4431 16.5 7 5 Tu 1 . - CDS 4474 - 5235 948 ## COG2014 Uncharacterized conserved protein - Term 5250 - 5286 7.9 8 6 Tu 1 1/1.000 - CDS 5339 - 6211 1004 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 9 7 Tu 1 . - CDS 6327 - 6848 933 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 10 8 Tu 1 . + CDS 6847 - 7602 857 ## Arch_0095 hypothetical protein + Term 7797 - 7824 0.3 + Prom 7722 - 7781 3.0 11 9 Op 1 . + CDS 7910 - 8299 388 ## gi|293193640|ref|ZP_06609862.1| putative 30S ribosomal protein S1 12 9 Op 2 . + CDS 8320 - 9406 1140 ## gi|293193641|ref|ZP_06609863.1| hypothetical protein HMPREF0970_02218 Predicted protein(s) >gi|292819860|gb|ACYT02000079.1| GENE 1 2 - 1078 1604 358 aa, chain + ## HITS:1 COG:Cgl0041_2 KEGG:ns NR:ns ## COG: Cgl0041_2 COG2815 # Protein_GI_number: 19551291 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 43 312 2 265 308 109 31.0 1e-23 MAAVPSHAPAAVMAATSTSLPAVATEDTANEAAKARKRRTAIIATVLLIALLLIGGSVWA LTRGAAEPKSIAVPNVVGLTQAEAKTQIEQAGFTWELNPDKVASDTVAEGSVASTDPAAG TQAEKGATVRVTISSGPDSVTLPDNLVGMSPDDARKAIEALGLKWELDSSKVASDTVPEG KVAQTNPSPGSKVKAGQTIRAYLSSGSDQVDVPDLSGMTQDQARSTLKGVGLELGNVTSV DSEKEKDRIVEQDPATGTKVKKGTAIGVSISSGKAAQVEIPTVVGMGREDAEAQLKALGL TVTIEEVAGNQPAGQVLSVEPGEGSKVEKNSTVKLKVSKGSQKGNNGGNNNGNTNTPK >gi|292819860|gb|ACYT02000079.1| GENE 2 1500 - 2138 874 212 aa, chain - ## HITS:1 COG:ML0015 KEGG:ns NR:ns ## COG: ML0015 COG0512 # Protein_GI_number: 15826878 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Mycobacterium leprae # 3 191 2 193 232 227 56.0 1e-59 MARILCVDNYDSFVFTIVGYLRHLGATVDVVRNDVVDPAWFEAGYDGVLISPGPGDPKSA GASLQTIADCAEHGIPMLGVCLGHQSLGELFGATVGHAPELMHGKTSVITHDGCGVFEGV PSPLTVTRYHSLTIDPATMPDELEVSATTESGIIMGVRHRSLPLEGVQFHPESVMTQSGH LMFANWLAACGDADARERAVSLKPVVAERFKL >gi|292819860|gb|ACYT02000079.1| GENE 3 2328 - 2489 351 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508344|ref|ZP_02043986.1| ## NR: gi|154508344|ref|ZP_02043986.1| hypothetical protein ACTODO_00841 [Actinomyces odontolyticus ATCC 17982] # 1 53 1 53 53 85 100.0 1e-15 MYAWIFRHLPGPTWFKVIESLALIGAAVAALFTWVYPWVQSYLELGQSSVGGA >gi|292819860|gb|ACYT02000079.1| GENE 4 2500 - 3261 1138 253 aa, chain - ## HITS:1 COG:Cgl2874 KEGG:ns NR:ns ## COG: Cgl2874 COG3764 # Protein_GI_number: 19554124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Corynebacterium glutamicum # 25 247 6 252 255 74 27.0 1e-13 MGEHVAPTTPAKKKRSNIFWNIVGVVGELLITFAIIVGLFSVWQLYWTTYEVAGQVSQTI ASYEEEHQPSKRALGEVRTDDPPAFDREVGDGEVYGLVHVPTWDWMKIPLAEGITSYVLD QGWAGHYDMTTQPGGVGNFSIAGHRRTYGNNFRWIDRLTQGDKVVVEVDDHYLVYSMVSS EIIDATDPTQMRVVAPVIDDVSWSETPTERWMTMTTCHPEYGNWQRYIVHLKFESWTPKD TGVPAELVDEPTN >gi|292819860|gb|ACYT02000079.1| GENE 5 3254 - 3952 790 232 aa, chain - ## HITS:1 COG:MT0015 KEGG:ns NR:ns ## COG: MT0015 COG3879 # Protein_GI_number: 15839386 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 40 225 59 254 262 122 37.0 8e-28 MHARSVRHIAGVLAVTVASGLLFSVSALNERKNPAGTSDLSTLVRNRQEQVKALENEVSS LDMQIQSYTSVAPQSGDEDVFTARSTQTVTGPGVQITLSDAPPGEIPEGATPNDLVIHQQ DIEDAMNALWSGGAEAMTVQGVRITSRTVIRCIGNVILVDGTSFSPPYVIQAIGDPATLR ATVTANPRMVNYQAYVTKYGLGWDMQTKDSLSFAPATTPLTVNYATVEESNG >gi|292819860|gb|ACYT02000079.1| GENE 6 4076 - 4339 375 87 aa, chain + ## HITS:1 COG:no KEGG:BLA_0071 NR:ns ## KEGG: BLA_0071 # Name: not_defined # Def: putative septation inhibitor protein # Organism: B.animalis_lactis # Pathway: not_defined # 5 87 128 203 203 84 43.0 2e-15 MAESKKRKKNGHEVEDDTDIQNWTDGIPLSPAWWAPTFVALMILGLLWVVVYYISSGTYP VPKLGAWNIAVGLGTMMVGFLMTLRWR >gi|292819860|gb|ACYT02000079.1| GENE 7 4474 - 5235 948 253 aa, chain - ## HITS:1 COG:MTH925 KEGG:ns NR:ns ## COG: MTH925 COG2014 # Protein_GI_number: 15678945 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanothermobacter thermautotrophicus # 7 229 2 211 236 65 24.0 1e-10 MTSPWDLYDQLIDEIPADITVTQILTDGKWRRVASSEDGVGMAFGMNVQSRPRATEDPSD LVGRPLRDIAALAKSWNFEDAGIGMAAVNSYHSHPVRALAHGFRPCKENNWARTFHPYAP LVAGKRVAVIGHFPFASAAMPDAAELNILERNVLEGDYPDSACEYLLPEMDYVFISGSAF VNKTMPRLLALASDAHTVVLGPSTPASPAILHAGATTVMSFASAHPARLEDGLAGRSLLG MYDAGMRVELCRP >gi|292819860|gb|ACYT02000079.1| GENE 8 5339 - 6211 1004 290 aa, chain - ## HITS:1 COG:MT0119 KEGG:ns NR:ns ## COG: MT0119 COG0705 # Protein_GI_number: 15839491 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Mycobacterium tuberculosis CDC1551 # 13 255 9 251 284 148 39.0 1e-35 MPSYGQRSDPHAAPDCPRHPGVRSVDYCKRCNRPMCVDCAIPTEVRSICVDCTSSKKRWM GSASRAAATGTPVVTYAMMAICVLMYVVTLLAPTTKLSLALVPAWLMAHPWTVLTGAFLH GGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGSAFILVWCLIQPSEIFVSTV GASGAVFGLFGAVFVLQRLGGSDTTAILTLLGINLVYGFMVSGISWQGHIGGAIAGVGAT WVLVHMARPRPGVTQVHQNRREAVVALGMIAGMLVLNALAFRVLYEVYGA >gi|292819860|gb|ACYT02000079.1| GENE 9 6327 - 6848 933 173 aa, chain - ## HITS:1 COG:Cgl0034 KEGG:ns NR:ns ## COG: Cgl0034 COG0652 # Protein_GI_number: 19551284 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Corynebacterium glutamicum # 3 171 24 188 190 179 62.0 2e-45 MKAILHTSAGDITVELFPNHAPNTVNNFVTLAKGEREWVDPTTGQKTSRPLYDGTIFHRV IPGFMIQGGDPLGTGTGGPGYQFNDEIHPELNFNDPYLLAMANAGKRMGKGTNGSQFFIT VAPTPWLLGNHTIFGKVADEESKRVVDTIATTPTGAQDRPVTEQVINSIEIVD >gi|292819860|gb|ACYT02000079.1| GENE 10 6847 - 7602 857 251 aa, chain + ## HITS:1 COG:no KEGG:Arch_0095 NR:ns ## KEGG: Arch_0095 # Name: not_defined # Def: hypothetical protein # Organism: A.haemolyticum # Pathway: not_defined # 93 231 83 234 289 72 35.0 2e-11 MTVMVASFPGCFLSVTHLTRAGGLQITARCCTIGVSGASAPLFIVDRIGDIMVTSPTFDA DKLRASSQQLRDAAAIYAGKVAVRAADLAGQGVDWAAPRAQAALNSAIEHATPAIENAAA RAQAAAAQAGPAIENAREHLVDDYLPRASLAVNQAGAALSARGSLSERARRASEASAIAL TTPTRKRRKCRALRAFGLTALVGAVAGAGYILWKRSQPIEDPWAEEYWADLDTDSFVPNT EAEKATFEAGE >gi|292819860|gb|ACYT02000079.1| GENE 11 7910 - 8299 388 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193640|ref|ZP_06609862.1| ## NR: gi|293193640|ref|ZP_06609862.1| putative 30S ribosomal protein S1 [Actinomyces odontolyticus F0309] # 1 129 33 161 161 163 100.0 3e-39 MTAADSIGTLADAQVESVWGEEAGVDAARRALQDSYLLLGDGFKEERNHFLDFGTKVDQS EEAFRQMEEQNAGYFSQTSAAMAQDPAVAAAAAGSGAGAGSGSSASTSQTSPSESQDNTN PNAAGSSEF >gi|292819860|gb|ACYT02000079.1| GENE 12 8320 - 9406 1140 362 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193641|ref|ZP_06609863.1| ## NR: gi|293193641|ref|ZP_06609863.1| hypothetical protein HMPREF0970_02218 [Actinomyces odontolyticus F0309] # 6 351 1 346 358 657 100.0 0 MVHSPMYKRLMRFVEDAKANETLSDYDSKHSSTLDAIREAEERIQHFREYQGFQGQTGDA INKWLEDAERRVRLWKASYLATSQVEVEMRRVMKHAREEAEMLSPVLVDARLDKLRDVAE VTIPVMEQYGLVGMAYNAVASTGAAVYDAIAAQANNQREASSTDILQRLNDSMQGLANNA ARIKELQEELKDSNKIWDPGDLPQPSNPSVADQLEKGIKDVSSHDPGVYPGNRDTDYGRS DLRGPNSGLYPNGFDDPTAQDADAEKLRKLQSGRIPDKFNKDGELGSRSKPITNPEDLMG IDLLHSRIGGERYANGTVGGYTPAPPNDRHHPLWNINGGPSTRFDASGRTSLAGAGALGA GA Prediction of potential genes in microbial genomes Time: Tue May 17 07:22:17 2011 Seq name: gi|292819859|gb|ACYT02000080.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.13, whole genome shotgun sequence Length of sequence - 162 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Tue May 17 07:22:21 2011 Seq name: gi|292819841|gb|ACYT02000081.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.14, whole genome shotgun sequence Length of sequence - 9883 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 7, operones - 5 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 208 282 ## gi|154508334|ref|ZP_02043976.1| hypothetical protein ACTODO_00831 2 1 Op 2 . + CDS 202 - 1410 1397 ## COG1404 Subtilisin-like serine proteases + Term 1422 - 1469 11.5 - Term 1406 - 1459 8.1 3 2 Op 1 . - CDS 1475 - 1936 311 ## gi|293193830|ref|ZP_06609866.1| flagellar transport protein FliP 4 2 Op 2 . - CDS 1992 - 2435 391 ## gi|293193831|ref|ZP_06609867.1| putative inner-membrane translocator 5 2 Op 3 . - CDS 2488 - 2976 340 ## gi|293193832|ref|ZP_06609868.1| conserved hypothetical protein 6 3 Op 1 . - CDS 3112 - 3450 344 ## gi|293193833|ref|ZP_06609869.1| putative sensor kinase 7 3 Op 2 . - CDS 3503 - 3703 258 ## gi|293193834|ref|ZP_06609870.1| putative sugar ABC transporter, permease protein 8 3 Op 3 . - CDS 3719 - 3907 289 ## gi|293193835|ref|ZP_06609871.1| chromate transporter 9 3 Op 4 . - CDS 3996 - 4808 523 ## gi|293193836|ref|ZP_06609872.1| conserved hypothetical protein 10 3 Op 5 . - CDS 4860 - 5138 191 ## gi|293193837|ref|ZP_06609873.1| cell cycle protein, FtsW/RodA/SpoVE family 11 4 Op 1 . - CDS 5325 - 6188 1049 ## COG0561 Predicted hydrolases of the HAD superfamily 12 4 Op 2 . - CDS 6282 - 6569 263 ## gi|154508324|ref|ZP_02043966.1| hypothetical protein ACTODO_00821 13 5 Tu 1 . + CDS 6958 - 7392 713 ## gi|293193841|ref|ZP_06609877.1| conserved hypothetical protein + Term 7403 - 7444 14.1 - Term 7391 - 7432 14.1 14 6 Op 1 . - CDS 7507 - 8874 1488 ## Cfla_3126 protein of unknown function DUF214 15 6 Op 2 . - CDS 8871 - 9596 207 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 9663 - 9722 1.9 16 7 Tu 1 . + CDS 9701 - 9881 186 ## gi|154508319|ref|ZP_02043961.1| hypothetical protein ACTODO_00816 Predicted protein(s) >gi|292819841|gb|ACYT02000081.1| GENE 1 2 - 208 282 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508334|ref|ZP_02043976.1| ## NR: gi|154508334|ref|ZP_02043976.1| hypothetical protein ACTODO_00831 [Actinomyces odontolyticus ATCC 17982] # 22 68 493 539 539 94 100.0 3e-18 GAGAGAGAGGGKDDKKGRRRKYEAFKFEDDEDDALPPGYVNPMSQTYGSDKDLKPASQKD DGWDPRQW >gi|292819841|gb|ACYT02000081.1| GENE 2 202 - 1410 1397 402 aa, chain + ## HITS:1 COG:BH0855 KEGG:ns NR:ns ## COG: BH0855 COG1404 # Protein_GI_number: 15613418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 53 303 101 340 361 98 31.0 3e-20 MVITNHASGHRRRLHFAGACAMTLALAAGAIALPAAPAHAAEPITAADQPHFAYYHLDQA RAKGYTGKGVTIALIDGEVDTSAPELAGATIIDKTPCTVTSGANSKSHGTAMASLLVSKE YGVAPDATLLAYRTTFPKDGDKAESDCRGHHANTLDEPEWLINQAITDGAQIISISASSG DTSDSVKWAIARANALGVIVVSGAGNDNEENTIDSYGKWSGVVSVSAIDTSGKRAEYSSW GKGVTVAAVGGPILAHNYENNTNISTRGTSNATPLVAGFLALAKQKWPNATSNQLLQLLT HTARTDQGGWNKYIGYGGADPGAMVNTDPSQYPDENPLMDKGYSDLGPTNEESQQYLAGL VDPRRIAGDPTYTYRGIDESILKDTDIPTPIHLGSSPRYHAK >gi|292819841|gb|ACYT02000081.1| GENE 3 1475 - 1936 311 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193830|ref|ZP_06609866.1| ## NR: gi|293193830|ref|ZP_06609866.1| flagellar transport protein FliP [Actinomyces odontolyticus F0309] # 14 153 1 140 140 215 99.0 6e-55 MTTPNPQVPDPNDVAGYNPQQVPAPPQVEYAPVEAMQPDMQQSWGQMPVGAEVQAGFPQL GPGVYGPTVPARRRTSYKLAVILLAVGLLLAVSPFLAEGLIGLVPGNHGDGGDGLLWLAV IMLFYLTPLGIILILVSGIVAIVVALMNSSSKS >gi|292819841|gb|ACYT02000081.1| GENE 4 1992 - 2435 391 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193831|ref|ZP_06609867.1| ## NR: gi|293193831|ref|ZP_06609867.1| putative inner-membrane translocator [Actinomyces odontolyticus F0309] # 13 147 1 135 135 201 99.0 2e-50 MTAPYSNGPGPHVFPGQDPQQLAVPGRSRGQALGAACRGFGITGLVVFALVIFGTLVYVL IPRGEHGLDLAPIAFIFIAGFFSIPVVVVNIIGLVLGIIALHKTKNPTERGYVARGLLMN AAPLTVVGLVVLLILLIYGFFYLISLF >gi|292819841|gb|ACYT02000081.1| GENE 5 2488 - 2976 340 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193832|ref|ZP_06609868.1| ## NR: gi|293193832|ref|ZP_06609868.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 162 1 162 162 281 100.0 9e-75 MTMPNPVGSGMPDYSGSVPGNLGTVPAYPGTVPGNPYADMQPAPEFAAPPCKALGVTSIC LGVVGIVLCVGGLFFGAYISFDADDSFERAMAPLAFIFGAVMIYIPGAIMNIVGLILGAT GRKRVQDPRGWKVYKVGIWMNVIPMILFLAAVVLTILFAMAY >gi|292819841|gb|ACYT02000081.1| GENE 6 3112 - 3450 344 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193833|ref|ZP_06609869.1| ## NR: gi|293193833|ref|ZP_06609869.1| putative sensor kinase [Actinomyces odontolyticus F0309] # 1 112 1 112 112 174 100.0 2e-42 MSDSNDIPAPSTPSVPTVADDGTRAAASAGSASVASRPVRTRSTWTLSMVCGVGGWLLIA GTIVLGVYNSLTAANEHDAVLREYGFGYAIVLMLLLVFVINVIGAWAWLVVS >gi|292819841|gb|ACYT02000081.1| GENE 7 3503 - 3703 258 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193834|ref|ZP_06609870.1| ## NR: gi|293193834|ref|ZP_06609870.1| putative sugar ABC transporter, permease protein [Actinomyces odontolyticus F0309] # 1 66 4 69 69 102 98.0 1e-20 MIGGFVATCIGFSGFVVGLSGVTQRGASKKQRYASFWGVLLCLSLLAAIALFIYLVDAGV IDWIKG >gi|292819841|gb|ACYT02000081.1| GENE 8 3719 - 3907 289 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193835|ref|ZP_06609871.1| ## NR: gi|293193835|ref|ZP_06609871.1| chromate transporter [Actinomyces odontolyticus F0309] # 1 62 1 62 62 123 100.0 3e-27 MEAPDSTRENGAPAHELPGVNRLSLMCGISTWVIVAITFFALSLIYDGILSFMNVDHSWD LI >gi|292819841|gb|ACYT02000081.1| GENE 9 3996 - 4808 523 270 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193836|ref|ZP_06609872.1| ## NR: gi|293193836|ref|ZP_06609872.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 270 5 274 274 459 100.0 1e-127 MNDHTGPAPVPNKRVLRTMCRLSLACALVGLAVIIGGFIVLSTSVFDEMSAGANLVVPGD SGAMRDDAFIRSVLPVASAAGIIHLAGVIAGFVGRKHAEDRAELGHCALGVGVNAFFLGC AGIIPAAGIVSNPGDLVPLLVLCGAAVLSMCVSLFERFFSSAGATSVGLGVAGLLTMGQA LLIGLFAILKEFATTSEDPFLPGLTVIIVCLYAGVPVGIAQLTGLIKGIRARRNADSAAE RVLATWGIVLNVPLCCCVLFLPLVVLTSIS >gi|292819841|gb|ACYT02000081.1| GENE 10 4860 - 5138 191 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193837|ref|ZP_06609873.1| ## NR: gi|293193837|ref|ZP_06609873.1| cell cycle protein, FtsW/RodA/SpoVE family [Actinomyces odontolyticus F0309] # 1 92 1 92 92 144 100.0 1e-33 MSIILGVVGWALIGLMVLAMWLSIRASASDPDPSGKEAIGFLPLFALMFIGPVNLAGGVI GIVGAVGKLTTRKLNWLGILLNASHTSSSPPS >gi|292819841|gb|ACYT02000081.1| GENE 11 5325 - 6188 1049 287 aa, chain - ## HITS:1 COG:Cgl0894 KEGG:ns NR:ns ## COG: Cgl0894 COG0561 # Protein_GI_number: 19552144 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 14 286 15 275 277 157 38.0 2e-38 MMTPTDPARYAGADLRLAAVDMDGTLLDDDKNFPPGMDELLDQMDARGVTFAPASGRQVW TLIDMFPGRPGMTVIGENGGIVMRDGVEVSSHPVDTPTVREVIRLVREATSGPDGIDGGL VMCGKQFAYVERTSDRFVDGVLPYYHRTKRVDDQIAIIDAIEAGEIDDAIVKLAVFVLGP VEALAEATLANFADTHQYAISGANWADLQIRGVDKGSAVRDLQRFLGVDRSQTAVFGDAG NDLSMMSEGDLSFAMANASQDVVEAARFIAPSNNEAGVAQVLRTLLG >gi|292819841|gb|ACYT02000081.1| GENE 12 6282 - 6569 263 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508324|ref|ZP_02043966.1| ## NR: gi|154508324|ref|ZP_02043966.1| hypothetical protein ACTODO_00821 [Actinomyces odontolyticus ATCC 17982] # 1 95 1 95 95 151 100.0 2e-35 MNESKSGASPSTKKSGNYKIPLILGAIGLLLMISPFFYSAYVDATVGRGGPDDVSAGWAF VWAFYRFTPAGVIVLVIALFMAFAEKISNIPSSDN >gi|292819841|gb|ACYT02000081.1| GENE 13 6958 - 7392 713 144 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193841|ref|ZP_06609877.1| ## NR: gi|293193841|ref|ZP_06609877.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 38 144 1 107 107 97 100.0 2e-19 MYLISLIPNNLIGAANQQTTCTPLQNELPVTLCVRLAMFAQSIERPYVEERIMSLEDLAK KAEEGFEKVVDAAKEKAEEAKDKLAELAGDAKDKAEDAKDKVEEATEDAKDKVEEAAEDA KDKAEEIAEDAKDKAEDIKDKLEK >gi|292819841|gb|ACYT02000081.1| GENE 14 7507 - 8874 1488 455 aa, chain - ## HITS:1 COG:no KEGG:Cfla_3126 NR:ns ## KEGG: Cfla_3126 # Name: not_defined # Def: protein of unknown function DUF214 # Organism: C.flavigena # Pathway: not_defined # 17 448 17 442 449 201 36.0 4e-50 MSAVRAAAGALLRSRDRATSVLTVAAFALPHAFLLAVTGGVMAFGARAAVAATSATADDP SSLDGMASFYVMLAYFAATLLIVPIISMGAAAARLGMSRRERDLAVLRLVGLAPGKTKLA CILETCVFAVVGVVVGSILYAVTLPAWGALSFQGRPMGASEMWVGVVALLVEGLAMILLA ALSSWLAMRKVAITPLGVARRTQAGRVSAVGPVLGLVLLVLWLSVGTLAMNLGTAIGMAV FMGFMGAIFLIVNLVGVWSISLMGRIMARVSRSPQMMVAGRRMADDPRAVWRSFGAVALV GFLVGIMYPASDAISMSGDRTDEIALIVVGDINRGMLLTFAITLALGAVSTAVNQSIRVL DSADQVRALSYMGSPRGFMDRSRRLEVAIPAFVMIVGSMLLGMVFMSPMLAAGAGKGVLI ALASAIVGVMLIVVASEATVPLRRRILSSVREGRE >gi|292819841|gb|ACYT02000081.1| GENE 15 8871 - 9596 207 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 222 1 217 318 84 28 3e-16 MTHDTAGLVTRALTKTYTRGHTPVHALAGVDLTLPQGTQVAIMGPSGSGKTTLLHCLAGV LRPSSGSITLDGEEMTTMSERVLSNLRLRRFGFVFQDGQLLPELPTEENIAMPLMLAGTP RSQAISRAREILANLGLDGAGPYRPGQLSGGQAQRVAIGRALATDPSVIFADEPTGALDQ ATGGEVMSLLTSACASTGASLVLVTHDPAVAARLPHTIHVRDGRISLEARGSGTPNQGVA R >gi|292819841|gb|ACYT02000081.1| GENE 16 9701 - 9881 186 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508319|ref|ZP_02043961.1| ## NR: gi|154508319|ref|ZP_02043961.1| hypothetical protein ACTODO_00816 [Actinomyces odontolyticus ATCC 17982] # 1 60 1 60 488 99 95.0 9e-20 MNRALDPLAAQLLLRAYARATNMLIAGRSFATDDPTLAALLRAFGAHVRPIAEAEGTPAS Prediction of potential genes in microbial genomes Time: Tue May 17 07:23:50 2011 Seq name: gi|292819839|gb|ACYT02000082.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.15, whole genome shotgun sequence Length of sequence - 666 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 666 596 ## COG0499 S-adenosylhomocysteine hydrolase Predicted protein(s) >gi|292819839|gb|ACYT02000082.1| GENE 1 3 - 666 596 221 aa, chain + ## HITS:1 COG:TM0172 KEGG:ns NR:ns ## COG: TM0172 COG0499 # Protein_GI_number: 15642946 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Thermotoga maritima # 11 218 5 212 404 135 42.0 8e-32 DGRTITGPGDEGRIEWARARMPVTEAAAHALAPLVAGRSVGLSLVLEPKTAALALMLSEA GARVSVFGWASETREDVAARLRDAGIPVFADSRASREREWELAREFLAQRSEFLLDDGSH LIRLAHDTERCPGVLDALVGAAEETTSGLRPLRSFDLRIPILASNDARSKTLFDNAYGTG QSCWTTILDLIDPRGVGGPVAGMSVVVIGYGDVGRGCARFG Prediction of potential genes in microbial genomes Time: Tue May 17 07:23:58 2011 Seq name: gi|292819815|gb|ACYT02000083.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.16, whole genome shotgun sequence Length of sequence - 20077 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 11, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 38 - 520 520 ## COG0499 S-adenosylhomocysteine hydrolase 2 1 Op 2 . + CDS 604 - 1896 1210 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 3 1 Op 3 . + CDS 1950 - 2399 510 ## COG3542 Uncharacterized conserved protein 4 1 Op 4 . + CDS 2544 - 2696 278 ## + Term 2707 - 2743 10.1 5 2 Op 1 31/0.000 + CDS 2929 - 3792 1358 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 6 2 Op 2 34/0.000 + CDS 3805 - 4677 1382 ## COG0765 ABC-type amino acid transport system, permease component 7 2 Op 3 . + CDS 4677 - 5456 573 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 5464 - 5504 12.5 - Term 5359 - 5395 2.0 8 3 Op 1 . - CDS 5570 - 5971 786 ## gi|293193929|ref|ZP_06609889.1| conserved hypothetical protein 9 3 Op 2 . - CDS 6049 - 6984 975 ## Kfla_5367 alpha/beta hydrolase fold protein 10 4 Tu 1 . + CDS 7008 - 7757 1128 ## COG0778 Nitroreductase 11 5 Tu 1 . + CDS 7867 - 8520 840 ## gi|293193932|ref|ZP_06609892.1| conserved hypothetical protein + Term 8676 - 8702 -1.0 - Term 8515 - 8573 19.5 12 6 Op 1 16/0.000 - CDS 8584 - 9054 774 ## COG0784 FOG: CheY-like receiver 13 6 Op 2 1/0.000 - CDS 9051 - 11057 1719 ## COG0642 Signal transduction histidine kinase 14 6 Op 3 . - CDS 11161 - 12627 1794 ## COG0471 Di- and tricarboxylate transporters - Prom 12662 - 12721 3.2 - Term 12679 - 12736 11.2 15 7 Tu 1 . - CDS 12770 - 13849 1354 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 16 8 Op 1 . + CDS 13848 - 14132 143 ## 17 8 Op 2 . + CDS 14198 - 15076 726 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 18 9 Tu 1 . + CDS 15258 - 16013 368 ## Mlut_06160 hypothetical protein + Term 16058 - 16110 4.4 19 10 Op 1 5/0.000 + CDS 16276 - 16644 366 ## COG0640 Predicted transcriptional regulators 20 10 Op 2 . + CDS 16578 - 18545 1908 ## COG2217 Cation transport ATPase 21 11 Tu 1 . - CDS 18579 - 18827 390 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Predicted protein(s) >gi|292819815|gb|ACYT02000083.1| GENE 1 38 - 520 520 160 aa, chain + ## HITS:1 COG:SSO0755 KEGG:ns NR:ns ## COG: SSO0755 COG0499 # Protein_GI_number: 15897655 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Sulfolobus solfataricus # 1 159 265 422 442 89 32.0 3e-18 MRALQASMDGFAVASLQEATASAGMLISATGERATIPLSALEAAPEGAIVTVAGGVDGEV SIDEAVAASWVMAESGDPHVQTLTSPSGKTLHILERGEGINYTAGEGNPIEIMDMSFGVQ LASLRELLTREGELAPGLHDLPREADDAVAAAALGALSLS >gi|292819815|gb|ACYT02000083.1| GENE 2 604 - 1896 1210 430 aa, chain + ## HITS:1 COG:MA1276 KEGG:ns NR:ns ## COG: MA1276 COG0402 # Protein_GI_number: 20090140 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanosarcina acetivorans str.C2A # 1 395 11 377 442 112 27.0 2e-24 MSDVVVWSAGMVIPITAPSILDGAVAVRDGRIEHVGARDWVVETLTQRGLSFTERHFDGV LLPGLVNAHTHLQYTGMASVGAGQYRGFDDWARAFDEVYDAGGLDWGGDAAAGARLLLES GTTAAADVVTDAAAASALHDAGLHGVAYWEVMSWSNEEWRARGEREVSASLDAMPTPPAV GISPHAPYSLDAEPLLDLPDMARRRGMRIHIHLGESHSEAEWSETRTTALADLWKSEHSS SFTAMRSRGGGFSSTQFVDQLGVLGPDCHVAHGVYMRADDRRRLRARQTAVALCPRSNRV IGLDAPPVGAYLTEGNMIAVGTDSLSSSPSLDLLEDVALLFDLAQAQGYEDQDLARRLLQ AATLGGATAMGLATGPDRLGQLQSGAVADMCVIDVPVTSIVETIDTVARHGAGRVVETVV SGHVRYSASR >gi|292819815|gb|ACYT02000083.1| GENE 3 1950 - 2399 510 149 aa, chain + ## HITS:1 COG:RSp0729 KEGG:ns NR:ns ## COG: RSp0729 COG3542 # Protein_GI_number: 17548950 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 7 147 10 147 172 80 34.0 9e-16 MTDVSPLIDAMGLAPHPEGGHYRRTWTAPAQVDTPRGSRHSASAIIFLLDRDKEARWHLV HSDELWIWSGPGALEVHLGGSGDAPEADPRIVTLGSPAGTQASDASNPVQILVPAGTWQR TFARSDYALATCVVSPEFTFDDWKLAEGA >gi|292819815|gb|ACYT02000083.1| GENE 4 2544 - 2696 278 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLEDLKKQAEEGLEKAKETFGEENVEKAVEAAKDKATEVVSDLKDKFQK >gi|292819815|gb|ACYT02000083.1| GENE 5 2929 - 3792 1358 287 aa, chain + ## HITS:1 COG:YPO2512 KEGG:ns NR:ns ## COG: YPO2512 COG0834 # Protein_GI_number: 16122733 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Yersinia pestis # 110 277 82 242 247 95 35.0 1e-19 MRRSVRSLAAVAAIAALGLAACTGGTSSSSSADAEQTYGPGALPTVTEGKLTVATSDPAY SPWILDNDPASGEGYESAVIYALAEELGYTADNVQWVRATFDASITPGAKDWDLNIQQFS ITDERKNAVDFTSPYYTTTSAIITKAGTPAADAKSIADLKDVLIGVQAGTTSQQFASDHL ESGLSQKLQMFNSSDDTVLALQTGRVDAIVVDLPTAFYMVSAQIDDGVIIGQFDDTTGGE EYGIVLPKGSKLTPTVSAAVDRLAESGKLAELQEKWLNEAQNVPTLK >gi|292819815|gb|ACYT02000083.1| GENE 6 3805 - 4677 1382 290 aa, chain + ## HITS:1 COG:lin0840_2 KEGG:ns NR:ns ## COG: lin0840_2 COG0765 # Protein_GI_number: 16799914 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Listeria innocua # 73 281 5 210 212 119 32.0 5e-27 MSDYSSNAAATLTVSAVERGRRAYRRKQTVRSILISLASTIVVAGVLIAVVVNSDGWEAT RNTFFNGKYFVEAFPQVLSGLWLNIRILLISVLGVAVFATLLAAARTLAGPVFFPIRFLA AAYTDIFRGVPFLVVLYLIGFGIPALNPTTRIPTAFLGTVALILTYSSYVAEVLRAGLDS VHPSQRYAARSLGLSHGQTLRMIIVPQAIRKVTPALMNDFISMQKDVGLISVLGAVDAIR SAQMVQAKTYNMTSYVVAGLLFIILSFPFIRLSDWYTARLRKREQMGGTV >gi|292819815|gb|ACYT02000083.1| GENE 7 4677 - 5456 573 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 19 257 1 242 245 225 46 2e-58 MSVPTNYEASPTSDNTTPVLRAVGIVKRFGDNIVLRGLDLDVAAHEVVVLLGASGSGKST LLRCANLLERVDDGQIFLAGEDITDPRANADQIRARIGVVFQHYNLFPHMSVLDNVTLAA RKVHSWEKERAHERGMELLDRIGLKDKAKEYPDRLSGGQQQRVAIARALATNPELLLLDE ITAALDPVLVGEVLDLVREIKEQGSTILMATHEISFARQAADRVVFLRNGQIVEQGPPEQ VIDNPREQATRDFLARILH >gi|292819815|gb|ACYT02000083.1| GENE 8 5570 - 5971 786 133 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193929|ref|ZP_06609889.1| ## NR: gi|293193929|ref|ZP_06609889.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 133 7 139 139 227 100.0 2e-58 MNKRSILTAVLALGLGVTALTGCATDSDSAHSYVTPKDVKTVERPIAQIDDSGIKVPEKR DLKIKLAESDKAAKWKIEVSDPTALEVGKSEKNVVTLHPLRALGEEDDPVTVSLTDPDGI TTDFKVTITEGAN >gi|292819815|gb|ACYT02000083.1| GENE 9 6049 - 6984 975 311 aa, chain - ## HITS:1 COG:no KEGG:Kfla_5367 NR:ns ## KEGG: Kfla_5367 # Name: not_defined # Def: alpha/beta hydrolase fold protein # Organism: K.flavida # Pathway: not_defined # 46 301 30 284 285 119 34.0 1e-25 MKQIEPFGPFALDSRVTAVAVPSPAGELSGLLTGPSAPALVDGTPAISAVSAPGGAGENR ALLVPGYTGSKEDYSTVLPFLGEAGWDVLAYSQRGQGGSAAHAGLGAYGMSDFVGDLIAV AEAWAGTTGRVHLVGHSFGGIVARAAVVKRPDLFASVTLFCSGRAVYDWMNTLPILDPLP TGPGARQQVLRTYFPDMNFDEPGVGWAEFQRIRALDTASENLVGIARILSQLRPDTPALA ATGVPVHVLYGDLDEIWPPSWYAEEAADLGARESIIRGGTHSPQLQFPQQWAEFASSYWT DVESGALVWSM >gi|292819815|gb|ACYT02000083.1| GENE 10 7008 - 7757 1128 249 aa, chain + ## HITS:1 COG:lin0935 KEGG:ns NR:ns ## COG: lin0935 COG0778 # Protein_GI_number: 16800005 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 3 228 2 227 246 167 41.0 1e-41 MTNEPIASQLAHRTIRAYKDQPLTEAEVTTLMDVARHTATSSFLQACTILHITDPQVRET IGTASGQPYVGGTKGDLFIFVADLYRNSRIRAEQGVSSEALGSINLFLTALEDALLAAQN VVVAAESMGLGTVYLGSILADPRPVVKALELPELTFPVLGLLVGHPNQEPGQKPRMPLSV VTAKNTYPRVESYSETLADYDREVTEYYDLRSGSRLESFSHLVATNIGVGGAHVSPIMEV LNEQGLCLR >gi|292819815|gb|ACYT02000083.1| GENE 11 7867 - 8520 840 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293193932|ref|ZP_06609892.1| ## NR: gi|293193932|ref|ZP_06609892.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 217 12 228 228 421 100.0 1e-116 MAELGFSTYVFIERIATNAAALHPFPEHNVALVRDALADAGFDITLLGPDAPEVGEGVYF QSEPFGDEVMGLLADALTLRGIGAYAYALVDSSLGGDLADIALFTRVGDVFPRHGRHILM TRMYIQRTLSGAGNKAVTWAFGSPTDLEEANRLLSEKFDTEPVTDPRGMAAIEIRHPEFA AGTAEPMVLLDEIFQVLGAAGFEGITMCNDPGQPAQG >gi|292819815|gb|ACYT02000083.1| GENE 12 8584 - 9054 774 156 aa, chain - ## HITS:1 COG:VC1155 KEGG:ns NR:ns ## COG: VC1155 COG0784 # Protein_GI_number: 15641168 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Vibrio cholerae # 5 155 22 172 181 122 41.0 2e-28 MTLTILSLEDEADVRDALERDLEQFWDKIRLEVAEDVDDAWTVIDEIVEDGDELALVLSD HRLPGKSGVDFLVELMKDERFGATRTVLVTGQADQSDTIRAVNQAGLDYYIGKPWNPEEL QTVVRDQLTEYVLESGVNPLPYVSVLDGVRIMEAIR >gi|292819815|gb|ACYT02000083.1| GENE 13 9051 - 11057 1719 668 aa, chain - ## HITS:1 COG:VC1156 KEGG:ns NR:ns ## COG: VC1156 COG0642 # Protein_GI_number: 15641169 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Vibrio cholerae # 234 660 19 418 431 197 32.0 4e-50 MLARTDVRSGGHRAGYPIHLLVVGDDSRSIAAPVTRDLANAFPGLCLDRVDGIGDLAEYG ASLRAGDHVLMGLVTSEVGDIDELIDRAATIPALRGMQWVVVTDAAEHRDLTRCMQSGAL SSVLKSPWTLPLLAGQAYSTMVRYLQGCGYSDRQIRSLIADPPPFAVQGPLLEGLDRDER EVVMELLAGVERVLGQRPRLIVPEGTQLVTQGEPVGAVYLVLDGQVSLHRDSPQGEVLAH LASSGPLIGLVSLARAEDAFFTGETATEATLVRLTTEQLQIVISEDPSIGATLTALAIRS LTRRLMRAEDLHLENAMLAEDLEAQKEALAATLEDLRATRAELVERARFAMLGELSAGIA HELNNPVTALVRAAKHLYEDVDAALAAPATASSREAMARALTAPPCSTSVERALMKELLP VVGDRTLARRLVRAGIQGAEGARALAQIPGGIDAYEAGARLGGSLRSVLAAGDRVIELTQ SLKGYARPDAEDLKPVDVREGIDDVLRLTAHRVRGIRIDCDYEDVPAVRAHPAKLQQVWT NLIVNAAEAIEDETADLVAAAEASGGVPELPARGEAEAIIRITVRPTPEGVSINIQDNGP GIDPGIVDKIMEPHFTTKAGRVRFGLGMGMSIVRSIIADHGGTLTIDSHPGSTIMRISLP AQPHEEES >gi|292819815|gb|ACYT02000083.1| GENE 14 11161 - 12627 1794 488 aa, chain - ## HITS:1 COG:VC1314 KEGG:ns NR:ns ## COG: VC1314 COG0471 # Protein_GI_number: 15641326 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Vibrio cholerae # 58 473 46 474 487 289 41.0 1e-77 MARRSRGAVSINPRSAQNMSTRPADFSKKKAAFNPVKALGALGALASITTCLVIQLPGLD VAGTRMFGIFLAAILLWVTEAVPLAGTAVLVIFLEVLFISDHALLSVGEGAPAYTKFFGA LANPVIILFLGGFMVADGAAKYKLDRALSAVLLRPFIGKPRLTVLGVMLITAIMSMFMSN TATTATMFAVMMPVIMALPEGKARTGIALSIPVAANVGGMGTPVGTPPNAIALGALENAG VSVTFLQWMLAAVPLMLVLLALSWAFIAWRYIPADASFDIDTSARFEKSRNAMIFYAVAG ATILLWMTESLHHISSNVVGFLPVVILLMTKVMSGDDLRALDWPVLWLVAGGIALGSGVA ATGLDKWMLGAIQWASIPGALLILVLALIGWVTSNVISHSASANLLIPMGMGLAMSVSTS AAEIAIVIALGCSLGMCLPISTPPNAIAYSTGTTPTREMVVVGVVVGLVGIILLAFVAPL TWGAIGVM >gi|292819815|gb|ACYT02000083.1| GENE 15 12770 - 13849 1354 359 aa, chain - ## HITS:1 COG:Cgl2726 KEGG:ns NR:ns ## COG: Cgl2726 COG2141 # Protein_GI_number: 19553976 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 1 352 1 346 347 417 61.0 1e-116 MKYFGFLSFGHYSNGGRHGITAAESLHQAIDLSVAADELGVNGAFFRVHHFAAQAAAPMP LLSAIASRTKAIEVGTGVIDMRYENPLYLAEEAAALDLIADGRTALGVSRGAPEIANKGW ESFGYRSEERNGADLARAHYERFLDAIDGKPMAEAAPLREQYPTQMNPGTPLPVLPHSPG LRSRIWYGAGSNASAIQAARDGINLMSSTLVFEHGDKPFGDIQAEQLRAYRQAWAQAGHG WTPRVSVSRSIFPLLSERDRGLYGLSASGDQVGHLDSSIATFGRTYAAAPSTLIKQLSQD RALAEADTLLLTIPNQLGFEENWSIIRNFAEYVAPALGWEPARPGVLPTGYEIDEAVAE >gi|292819815|gb|ACYT02000083.1| GENE 16 13848 - 14132 143 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSPYAISVECSTISSVGCEIGAERLGATPSLYARQTAHRPVITLFTRALHPISMHNTPS DRVQRPLKGAALTSKTLAVPAKAPHHHPFGEHVV >gi|292819815|gb|ACYT02000083.1| GENE 17 14198 - 15076 726 292 aa, chain + ## HITS:1 COG:MT3573 KEGG:ns NR:ns ## COG: MT3573 COG1961 # Protein_GI_number: 15843063 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Mycobacterium tuberculosis CDC1551 # 18 290 196 463 463 63 23.0 4e-10 MREGGVEPPLHHWNTDLNSAGHFTAHGSEFSVDAVRYLLANPLHCGYIKHYASGELYPVQ GEAFPPIVGEQTWRAAVAKLEYNVRRSARQGNQPKYLLSTIGLCGKCGATLVSGTNSRKQ PTYRCGEQFHLTHQREPVDAMVTEAVLTRLSSVDVHDLVMPQEDDGPDREELLTERNALV DRVKELSPLLRDIHHPVLEITAAINDVKARIDEIDAELLDRSVSAAAKLLADVEEPVGTA ERREVVEAKWKVLDVDRRRMLVDELVTVTIEPITPGHVKFDPDLIRIEQRRD >gi|292819815|gb|ACYT02000083.1| GENE 18 15258 - 16013 368 251 aa, chain + ## HITS:1 COG:no KEGG:Mlut_06160 NR:ns ## KEGG: Mlut_06160 # Name: not_defined # Def: hypothetical protein # Organism: M.luteus # Pathway: not_defined # 10 251 2 243 300 265 86.0 1e-69 MSVVIDVPRASALDRLKQQNEPEQSQQQLGSPETMELLTSILAAVEAQNTRIATLTEQQK KLAGFVKVMDEETTRRLERITAPASTSSPSSDVSARIASIESRQNEIASTLGEFAQSLNS ESLNAASRSLVAEAQKNRTATASAIEGLKAQVTANQKLVSQVGGAVQRIEKRTEERVEKA VEQVAGEASATMTASLDASNARAERIIAATAKLEARQLWSAAAAICLVLLPVAVVVAGLW MGIAGLITGVQ >gi|292819815|gb|ACYT02000083.1| GENE 19 16276 - 16644 366 122 aa, chain + ## HITS:1 COG:Cgl0882 KEGG:ns NR:ns ## COG: Cgl0882 COG0640 # Protein_GI_number: 19552132 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 1 119 1 119 119 162 73.0 1e-40 MLTIASRLDVMNRLGRAMADPTRSRILMSLLDSPSHPAVLSRELGLTRSNVSNHLTCLRD CGIVVAEPEGRQTRYEIADPHLAAALTALVDVTLAVDESAPCIDPACSVPSCCAASSSGD AS >gi|292819815|gb|ACYT02000083.1| GENE 20 16578 - 18545 1908 655 aa, chain + ## HITS:1 COG:MT2048 KEGG:ns NR:ns ## COG: MT2048 COG2217 # Protein_GI_number: 15841474 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Mycobacterium tuberculosis CDC1551 # 37 653 140 756 771 486 56.0 1e-137 MHRPGLLGSELLRREQFGGRLVSAACGCDEPTTSPADKAEEAERPWWRDPGLVVPILSGV AFGTGLALEWSGLHIAALVAFWAGLLLGAYTFVPGAIRNLVVKRKLGIALLMTISAVGAV ILGYVEEAAALAFLYSIAEALEDKAMDRARGGLRALLKLVPETATVLRDGTSASVPAREI AVGDVLLVRPGERVATDGLVRSGRSSLDTSAITGESIPVEVAPGEAVSAGAINSAGVLEV EATAAGTDNSLTTIVELVEQAQAEKGDRARIADRIARPLVPGVMVLAVLVGVLGSLLGDP ETWITRALVVLVAASPCALAIAVPVTVVSAIGAATKFGVVIKSGAAFERLGGIRHLAVDK TGTLTRNRPEVTAIVAAHGFDDAQVLAWAAAVEQHSTHPLAAAIAAAGRGTPAAQDVAEE AGHGIGGLVDGRRVAVGSPRWIDAGPLKARVEDLEAEGQTCVLVTVNSFLAGAIGVRDEL RPEVPEVVRTLRDQGVEVSMLTGDNSRTAAALAKLAGIGDVHAELRPEDKARIVAGFSET SPTAMIGDGINDAPALAGATVGIAMGATGSDAAIESADVAFTGHDLGLIPQALRHARRGG RIINQNIVLSLAIITVLLPLAITGVLGLAAVVLVHEVAEVVVIANGLRAARARKQ >gi|292819815|gb|ACYT02000083.1| GENE 21 18579 - 18827 390 82 aa, chain - ## HITS:1 COG:BMEI0017 KEGG:ns NR:ns ## COG: BMEI0017 COG2141 # Protein_GI_number: 17986301 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Brucella melitensis # 1 82 1 83 340 102 59.0 1e-22 MKYFGFLSFGHYTNGPRHGITAAQSLHQAIDLSVAADQLGVNGAFFRVHHFAPQAAAPMP LLSAIASRTKAIEVGTGVIDMR Prediction of potential genes in microbial genomes Time: Tue May 17 07:24:36 2011 Seq name: gi|292819803|gb|ACYT02000084.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.17, whole genome shotgun sequence Length of sequence - 9963 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 6, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 23 - 76 9.0 1 1 Op 1 . - CDS 114 - 344 258 ## Elen_0011 hypothetical protein 2 1 Op 2 . - CDS 341 - 952 476 ## Elen_0011 hypothetical protein - Prom 1065 - 1124 1.6 - TRNA 1457 - 1543 57.3 # Leu CAG 0 0 - Term 1412 - 1455 10.8 3 2 Op 1 34/0.000 - CDS 1668 - 2543 573 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 4 2 Op 2 . - CDS 2540 - 4672 1807 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 4781 - 4840 4.8 + Prom 4783 - 4842 2.1 5 3 Tu 1 . + CDS 4869 - 5705 984 ## LSL_0740 phage super infection exclusion - Term 5727 - 5780 18.0 6 4 Op 1 . - CDS 5825 - 6757 1064 ## SCAB_88081 putative 5' nucleotidase 7 4 Op 2 . - CDS 6857 - 8224 1417 ## COG0477 Permeases of the major facilitator superfamily + Prom 8226 - 8285 3.5 8 5 Tu 1 . + CDS 8312 - 9448 1840 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 9479 - 9539 16.0 + Prom 9563 - 9622 1.9 9 6 Tu 1 . + CDS 9706 - 9961 109 ## Elen_1126 transposase and inactivated derivative Predicted protein(s) >gi|292819803|gb|ACYT02000084.1| GENE 1 114 - 344 258 76 aa, chain - ## HITS:1 COG:no KEGG:Elen_0011 NR:ns ## KEGG: Elen_0011 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: not_defined # 1 76 296 371 372 63 38.0 2e-09 MSLNHQVKTVLWWCYLHTEFPATPAHILKTTITDQQIIDQFDKASHRAQAQAEIDRWGTA VNWTDFHHSGTWHETY >gi|292819803|gb|ACYT02000084.1| GENE 2 341 - 952 476 203 aa, chain - ## HITS:1 COG:no KEGG:Elen_0011 NR:ns ## KEGG: Elen_0011 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: not_defined # 1 201 92 290 372 209 49.0 6e-53 MVFVDGIYLSHKLVVLIACTKTHVLGWYVAKGETTRARQALMSRIAPPDVVVCDGGQGIA SAVKTTWPTTRIQRCVFHAYSAVKRKTTTRPRTQAGVDLYSLAQALLEVTTFDQAVAWMS KLATWNTTYKEFLAQRTRLPDGRWVATHARLIQAKNSLNTLVKQGTLFTYLDPALDLEGD PIARTSNLIEGGINTQLRCVLVA >gi|292819803|gb|ACYT02000084.1| GENE 3 1668 - 2543 573 291 aa, chain - ## HITS:1 COG:ML0849 KEGG:ns NR:ns ## COG: ML0849 COG0619 # Protein_GI_number: 15827377 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Mycobacterium leprae # 39 252 14 244 283 76 28.0 6e-14 MMEPHSACGATGPGGGASEGRFSRTPPGLGEGPPRPKPRRSAGFPLPRPLPWPTPLSRAW PGTLIACWTVLTTCVILLPRWSTLAIVGGLLLVASLVVRLPLSVAPRPPMWFVSGFIGGC LGAWLGDGLELFLRVSTLALVVLWGSGLIAWVTPTASLAAALRFFLRPLRLLGAPVDQWS LVMASALRGLPMLRDQAQAVLDTAKLRLGQDMATLSLRGSARLSVDVITAILSATSRGAA ETGRAMSMRGSIEAQDGATRGARVRLGWVDAAVIAASLLGIAGIVACRLMP >gi|292819803|gb|ACYT02000084.1| GENE 4 2540 - 4672 1807 710 aa, chain - ## HITS:1 COG:ML0848 KEGG:ns NR:ns ## COG: ML0848 COG1122 # Protein_GI_number: 15827376 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Mycobacterium leprae # 11 709 59 713 724 344 38.0 3e-94 MSSTARDARRLTPVEVATAGALSGLAVTFGLIATVTPVFQLFFQVATAVPLAMVSLKLRP RAAVAAFASTILLAIAVGGVATAGRAFQAALVGLIIGFLHKKRASWLPVSGVAAGLGLVW GVGTGIAFWILSDLRTLGLESIQKTLDGFLKLIGNIPHSGGFVDAGHQLGQWFVDWWWIW IPITRLIGVAFLVLAARWLLGAILSRISLDEGWDPLLDATARVDEEPAAEASSPLPLTLI DVSFTYPGADHPALRGVTLSFERPEFTVIVGHNGSGKSTLALLLAGAEPGSGTREGGGVL GAVGGTALVGQRSELLVLGQSVAEDVTWGMNAEHIAGLDLDELLERVGLAGLADADPRSL SGGQLQRLALAGALARSPRLLISDESTAMIDRAGRAEMLDLLASLPARGIAVVHITHDPA ESARADRVVTIDGGRILSDRRAGEGSAAADGLRIDEAGDPPVSPAPDAPTVSSVAGAPAL IKAAHLWADRVAHTYDLGTPWEKPVLRDVSLILDPGQAMLITGDNGSGKTTLSRVLTGLL VPTWGRVTLGGRPMERCVGEVALSMQFARLQLQRPSVRSDILAAAGHGPRIGTGSPHRKG AISREEGDRLVAEAMELVGLDPALATRGIDDLSGGQMRRVALAGLLSSHPSVLILDEPMA GLDAASRDLLISVLDERRRAGLSILVISHDLEGMDSLCDSHGRLAEGVLS >gi|292819803|gb|ACYT02000084.1| GENE 5 4869 - 5705 984 278 aa, chain + ## HITS:1 COG:no KEGG:LSL_0740 NR:ns ## KEGG: LSL_0740 # Name: not_defined # Def: phage super infection exclusion # Organism: L.salivarius # Pathway: not_defined # 178 277 115 215 216 115 58.0 2e-24 MTSPTPQYGLGNNTPNATPSAPHSPFQQVTPPQAKPFYTKWWFIAIAVLVGLVLIGSLTN PKSKNSTKDAEPSTASTTTESSAEITVPNVVGMRGDEARATLEALGKVDISFKDESGKKM VLDVTNWTVTSQTPKAGATLSKGAKVTLFVHHDTDDAEPTDTPTTEAPPTTDPKTDDVPR EHRKALKTAENYSKRLHMSKQGIYDQLISEAEGFSPEAAQYAIDNIQADWNANALAKAKE YEKSLNMSDEAIREQLVSEYGEQFTQEEADYAISHLDD >gi|292819803|gb|ACYT02000084.1| GENE 6 5825 - 6757 1064 310 aa, chain - ## HITS:1 COG:no KEGG:SCAB_88081 NR:ns ## KEGG: SCAB_88081 # Name: not_defined # Def: putative 5' nucleotidase # Organism: S.scabiei # Pathway: Purine metabolism [PATH:scb00230]; Pyrimidine metabolism [PATH:scb00240]; Nicotinate and nicotinamide metabolism [PATH:scb00760]; Metabolic pathways [PATH:scb01100]; Biosynthesis of secondary metabolites [PATH:scb01110] # 6 308 5 307 314 363 61.0 4e-99 MPDSLDLERALVIGVASSALFDLSESDAVFRNEGEEKYRAYQCEHLDDVLESGVAFPFIR RLLDLNDLAEGERLVEVVILSRNDPETGLRVMRSVKHHGLDITRAIFMQGRAPYRFMKPL RMSLFLSANEDDVREAIDMGFAAGHVVGPGVADDGGNDLRIAFDFDGVLADDSAERVFQT GGLDKYQENESALAEVPIDRGPMADFLERINRIQGIEDSKSVDDPQGYRRRVRVAVVTAR SAPAHERAINSIGQWGLSVNDAFFLGGLPKGPMLEVLQPHIFFDDQRRQVEGASLSTPSV HIPFGEINRE >gi|292819803|gb|ACYT02000084.1| GENE 7 6857 - 8224 1417 455 aa, chain - ## HITS:1 COG:RSp0310 KEGG:ns NR:ns ## COG: RSp0310 COG0477 # Protein_GI_number: 17548531 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 38 441 35 439 450 121 29.0 3e-27 MLYPVGTAVGSRRLLTGYKCPATLVEMTRDTSSSALVSASGRTLASNWWRVVAMIWSGQA FSIITSGASGWAIVWHVTTTEGSALKLAIVMALSQLPLGLLAPLGGVAADRYNRRTVMII SDLGAGGMSLALGALAWLGHGSFALICLFAALRSCFQAFHFPAMSAAMPMLVPEKHLMRV NTLDQAVGSIANIGSPAIGIALYTAFGLPYTLGLEFVGALLAVAGLALARIPSVEAEMPP TIMGQIREGWRALSANSGLVSLIVALTAGMMVFEALAVVYPLMAQQYFGADGAMVSVAEA ITGTCMLVGAVIMMAWGGGKRLALLISATTVVVGLPFAAVGLLPRSGFWAFVALMGFGCI FLAWFHAPLMTLIQRHVGEDKVGRALGFFQLMLGLAMPVGMVLGGAFAEKMGGPVLFTAS GVFFCVVGVVMYAIPRIRDLDTPVPAALPLDDEDA >gi|292819803|gb|ACYT02000084.1| GENE 8 8312 - 9448 1840 378 aa, chain + ## HITS:1 COG:FN0305 KEGG:ns NR:ns ## COG: FN0305 COG0614 # Protein_GI_number: 19703650 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Fusobacterium nucleatum # 44 373 6 327 336 136 28.0 7e-32 MKTRLATLTAILATATLALTACAGGSGSATSQSEATTQDASASSTRTITDHAGNEVVLPE KITRVAIDQIPIESTYLAYFDGKAPYLVGMSAARVKAMSQTIAAEMAPEMMQVDTSYYDK GELNAEALLNLNVDVVFYNAFNKEHGEMFRKAGIPAVGFTTLGNPSETYAEWMELLEDVF NEDGHMADKIALGKDLVADARARTAKVPADQKVSTMVLMGAADGQLAVAGGKDGWFTNEW ADSLNYTNVTRDTDTSHTPVTFEQVLTWDPQVLLVTGKGMSNMTANTVLTNSVEGIDLST LSSVKSGRVYSTGLGMWNWFTPNPDSPIVANWIGASLYPEQFSDVDLVSMTKDYYQKMYN FTLTDEQAQRIINPDSAS >gi|292819803|gb|ACYT02000084.1| GENE 9 9706 - 9961 109 85 aa, chain + ## HITS:1 COG:no KEGG:Elen_1126 NR:ns ## KEGG: Elen_1126 # Name: not_defined # Def: transposase and inactivated derivative # Organism: E.lenta # Pathway: not_defined # 1 85 55 140 167 104 72.0 1e-21 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGGAQALKPK PKGRPKGSVRAVPPTREEELQERVR Prediction of potential genes in microbial genomes Time: Tue May 17 07:24:55 2011 Seq name: gi|292819787|gb|ACYT02000085.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.18, whole genome shotgun sequence Length of sequence - 11408 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 78 - 410 441 ## COG2801 Transposase and inactivated derivatives 2 2 Op 1 35/0.000 + CDS 518 - 1546 1296 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 3 2 Op 2 . + CDS 1543 - 2343 842 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 4 3 Tu 1 . + CDS 2542 - 2751 286 ## COG1278 Cold shock proteins + Term 2950 - 2986 4.0 + Prom 2795 - 2854 3.6 5 4 Tu 1 . + CDS 3086 - 3304 429 ## gi|154508285|ref|ZP_02043927.1| hypothetical protein ACTODO_00781 + Term 3348 - 3384 7.2 + Prom 3771 - 3830 2.9 6 5 Op 1 . + CDS 3857 - 4153 167 ## gi|293194039|ref|ZP_06609921.1| protein HldE 7 5 Op 2 . + CDS 4167 - 5483 954 ## gi|293194040|ref|ZP_06609922.1| calpain family cysteine protease 8 5 Op 3 . + CDS 5480 - 5950 239 ## gi|293194041|ref|ZP_06609923.1| DNA-binding protein HU-beta 9 5 Op 4 . + CDS 5991 - 6488 567 ## gi|293194042|ref|ZP_06609924.1| conserved hypothetical protein 10 5 Op 5 . + CDS 6520 - 6990 409 ## gi|154508282|ref|ZP_02043924.1| hypothetical protein ACTODO_00778 11 5 Op 6 . + CDS 7034 - 7519 319 ## gi|293194044|ref|ZP_06609926.1| conserved hypothetical protein - Term 7499 - 7540 3.0 12 6 Op 1 7/0.000 - CDS 7643 - 9028 1560 ## COG0001 Glutamate-1-semialdehyde aminotransferase 13 6 Op 2 6/0.000 - CDS 9077 - 10108 1380 ## COG0113 Delta-aminolevulinic acid dehydratase 14 6 Op 3 23/0.000 - CDS 10105 - 10911 393 ## COG1587 Uroporphyrinogen-III synthase 15 6 Op 4 . - CDS 10908 - 11408 260 ## COG0181 Porphobilinogen deaminase Predicted protein(s) >gi|292819787|gb|ACYT02000085.1| GENE 1 78 - 410 441 110 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 106 112 215 216 108 51.0 3e-24 MDAKPAGAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCIDNGATEQVFGHLKDE FFRGQDWQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQALQEAA >gi|292819787|gb|ACYT02000085.1| GENE 2 518 - 1546 1296 342 aa, chain + ## HITS:1 COG:MA1234 KEGG:ns NR:ns ## COG: MA1234 COG0609 # Protein_GI_number: 20090098 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Methanosarcina acetivorans str.C2A # 19 337 19 337 343 239 43.0 5e-63 MKSVLTRNGRLRVWVVPTLIALIVVCAAAAMLIGRFSVSLEDVVAAVRARFWGGPAVPPR VNSVVFDLRAPRIIVAILIGGGLSVAGASFQSLFSNPLATPDTLGVAAGTCVGAVIALLL DWNLIGVQAAALVAGLATMAFTTAISRTRTGAFNVITLVLGGVIVSALANAVLSLLKLTA DPTSQLPEITYWLMGSLAAVTYHQIALGAPFIIAGVVVIVALRWQLNILSLSEDEARSAG VNVSLMRAILIVASTVITASVISMCGQVGWVGLLVPHCARMLCGQNNRAVIPVSLLLGSA LMIVIDTLARSLSASEIPISILTAIIGAPFFIVLLRRTGGAR >gi|292819787|gb|ACYT02000085.1| GENE 3 1543 - 2343 842 266 aa, chain + ## HITS:1 COG:FN0307 KEGG:ns NR:ns ## COG: FN0307 COG1120 # Protein_GI_number: 19703652 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Fusobacterium nucleatum # 2 258 6 256 264 185 34.0 9e-47 MISVENATFTYPGAPSPILTNVSFEVPERSLLAILGPNGAGKTTLLRTMIGLQKWDSGRT LIDGTPISSMSTRALGRVLSYVPQARNASNVALTGLEMVMVGRAPHMRTLAQPGAREERM ARDVLDEVGASHLAEMPCATMSGGQFQMILIARALVADPRVLVLDEPETGLDFRNQLIVL GLLERLVRDRGLAVIMNTHYPAHALRVADQVALFSSTHEAVVGPASSVMNADTLASIFGV DVAIGSVAFEGEDVQAIVPVRLSGDK >gi|292819787|gb|ACYT02000085.1| GENE 4 2542 - 2751 286 69 aa, chain + ## HITS:1 COG:VC1142 KEGG:ns NR:ns ## COG: VC1142 COG1278 # Protein_GI_number: 15641155 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Vibrio cholerae # 1 69 4 71 76 78 56.0 3e-15 MATGTIKWFNDAKGFGFITPDDESGDVFVHYSNIIGQSGRRTLLEGEKVEYEAIEGPKGL QAMNVARAE >gi|292819787|gb|ACYT02000085.1| GENE 5 3086 - 3304 429 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508285|ref|ZP_02043927.1| ## NR: gi|154508285|ref|ZP_02043927.1| hypothetical protein ACTODO_00781 [Actinomyces odontolyticus ATCC 17982] # 1 72 47 118 118 76 100.0 4e-13 MNQIVKAETAPTMSQATASASVLIALIVVLAGLGVFAALQVASVASVVFAIVIALTALIV SPALLSIAHTRA >gi|292819787|gb|ACYT02000085.1| GENE 6 3857 - 4153 167 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194039|ref|ZP_06609921.1| ## NR: gi|293194039|ref|ZP_06609921.1| protein HldE [Actinomyces odontolyticus F0309] # 1 98 1 98 98 155 100.0 8e-37 MSDFQMNPADVQEASVLMSRLADRMSDLELTKSDDSLDCGDTAVQEALAYFVSMYNKRGQ TTRTWLNGCSDSLHATAQASEDTDDEAAEFFAALRAKL >gi|292819787|gb|ACYT02000085.1| GENE 7 4167 - 5483 954 438 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194040|ref|ZP_06609922.1| ## NR: gi|293194040|ref|ZP_06609922.1| calpain family cysteine protease [Actinomyces odontolyticus F0309] # 36 438 1 403 403 801 99.0 0 MSTRFSQRFPAVTGDLGGLWSSQNEIRNRRRDIRDLGTSLTGAISTCDDWTGLAKEAFIN SATAEQKEINIWEDGCLQAANALKSYYFTLEWVISSVNNIRAQADELWAQFQAMSPETRS SQHAEIEGELAYLQKSYDDAKHILSEEALNTAAILREALYFTPEDIHTETLKNGKIRRLD YGDTRSLTYTELQEILDRLADPSSSLFNIDQGRIGDCHLLASLNAYNQSEKGREHLAKMI TPLYDSDNRFVGFFVTLPGYDGGHQRVFVQDVLVHGNGDDTQADIASIFEKAFIQAHMGG TQGKFPAWGASGSFSAWTMKDISGENAAITANLGFDRDAMKEAAINGIQAEKPVVAESSI ATHDTTVTTPDGSRENIQIVSQHAYTVVGADENGVTLINPWGHNKLSDNPDIHTDATFTM SWKDFYANFGDVTVGRIP >gi|292819787|gb|ACYT02000085.1| GENE 8 5480 - 5950 239 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194041|ref|ZP_06609923.1| ## NR: gi|293194041|ref|ZP_06609923.1| DNA-binding protein HU-beta [Actinomyces odontolyticus F0309] # 1 156 1 156 156 326 100.0 4e-88 MSIRPARIRAIVMAILVLAFVIPWTYAHIAYAWPWKEQSTGNACTGRYYLTPYDEHRPIN LGTLSDGRTVFMGMTGKVSMGRKIGSFGLSARNNNNHYESIGGATELHRGDSITVEGVGT FTLKEAHSDIVWFTPNPGKALFCFDPDPSFTVREEP >gi|292819787|gb|ACYT02000085.1| GENE 9 5991 - 6488 567 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194042|ref|ZP_06609924.1| ## NR: gi|293194042|ref|ZP_06609924.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 165 1 165 165 326 100.0 4e-88 MSTTHSRTRTRIRAIVVAILVLAFVIPWTYAHIAYAWPWKRFQTGTRITCQGQYLVGAEP NQNATRLGTLTNDSLVRLDAWGEIRMGAETAGFTLFTIEGNHVNDIAHVPELQLGESTTV AGVGTFTLKEAHSGTVWFTPNPGGAAFCFDPDPTFTVYDYAQQGH >gi|292819787|gb|ACYT02000085.1| GENE 10 6520 - 6990 409 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508282|ref|ZP_02043924.1| ## NR: gi|154508282|ref|ZP_02043924.1| hypothetical protein ACTODO_00778 [Actinomyces odontolyticus ATCC 17982] # 1 156 1 156 156 314 96.0 1e-84 MSIRPARVRAIVVAVLVLAFVIPWTYAHIAYSWDWKEQSTGEACTGRYYLTPYDKQRSMK LGTISDGRLVYIGISGKVSMGRQIGSFGLSARDDNDHFDFLGGAEDLHLGDTTTIEGVGT FTLKEAHSGIVWFTPNPGKATFCFDPDPTFTFRDFP >gi|292819787|gb|ACYT02000085.1| GENE 11 7034 - 7519 319 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194044|ref|ZP_06609926.1| ## NR: gi|293194044|ref|ZP_06609926.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 161 1 161 161 326 100.0 2e-88 MSIRPARVRAIVVAILVLAFIIPWTYAHIAYAWRWKRFQTGTRITCQDRYLVSGNPHQPS QLLGNLSSGLPVLVRVKGEVVIGTETASLGLSAVDGENFHRLGLVTEIHRGESTTIAGVG TFTLKEAHSGTVWFTPNPGGAAFCFDPDPTFTMNNFAQQGH >gi|292819787|gb|ACYT02000085.1| GENE 12 7643 - 9028 1560 461 aa, chain - ## HITS:1 COG:Cgl0432 KEGG:ns NR:ns ## COG: Cgl0432 COG0001 # Protein_GI_number: 19551682 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Corynebacterium glutamicum # 1 447 1 420 434 394 49.0 1e-109 MTTNETAFSQAKSVIPGGVDSPVRAFGGVGGTPRFIASASGARVTDVEGRSYVDLVGSWG PALLGHAHPEVVAAVQEAALRGLSFGAPTETETLLASAVRERVPFAERVRFVSTGTEATM TAIRLARGATGRDLIVKFAGNYHGHSDGLLAAAGSGVATGGLPGSAGVPEAITAQTIVLP YNDVEALRACFEQVGDSIAAVIFEGAPANMGTVPPHPGWNREIRRLCTAHGALMILDEVL TGFRVDPAGWWGLEAVAGWVDGAPSGCYSAGFVDASCVEGADWVPDLVTFGKVVGGGMPL AAVAGRADVMDLLAPLGPVYQAGTLSGNPLATVAGLRTLELADQGVYDRVNASAQEISTI VSDALSAAGVAHRLQRTGSLFSVMFGEAAASSGVYDYDQARAQEVWRYAPFFHSFLSSGV ALPPSVYEVWFVSGAHGEAELDAIAAAAPAAAQAAAAAQPE >gi|292819787|gb|ACYT02000085.1| GENE 13 9077 - 10108 1380 343 aa, chain - ## HITS:1 COG:Cgl0426 KEGG:ns NR:ns ## COG: Cgl0426 COG0113 # Protein_GI_number: 19551676 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Corynebacterium glutamicum # 26 343 14 337 339 403 68.0 1e-112 MTTVPESVTSYLAEAGVDSSPIPTIRPRRLRSTPAMRALVRETHVDPAKLIWPVFVRDDI DEPREITAMPGQYQHTIDSLRRAAAEAAEAGVGAIDLFGVPARRDAIGSQAWAEDGILNR GLAAVRAEVGDALVVCADTCLDEFTDHGHCGLLDSEGGVDNDATLPLYQAMAISQARAGA HMVSPSGMMDGQVAAIRAALDQAGHADVAILAYSAKYASAYFGPFREAVGSTLKGDRRTY QQDPANRREGLFEALLDAAEGADMLMVKPAGPYLDVLADVAAASDIPVAAYQVSGEYAMV EAAAANGWIDRTRVIDESLTGIFRAGADSVLTYWALEVARRTR >gi|292819787|gb|ACYT02000085.1| GENE 14 10105 - 10911 393 268 aa, chain - ## HITS:1 COG:ML2420_2 KEGG:ns NR:ns ## COG: ML2420_2 COG1587 # Protein_GI_number: 15828302 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Mycobacterium leprae # 10 256 3 258 275 94 35.0 2e-19 MNEPHASAPLTGRRILLTRTKSDDAIARALRTAEAQVDALALTVSTPLDSAQLDAARDRL ADGGFAWVVFSSWRAARAVVSGLPRARSLGTRIAAVGEATARWISDHAGVSADVTGAGSA AALLECFPAPASGERPVLIPRSAAAPDTLPDGLRALGWSVEAVDAYTTTHADATDIPDDI AGNFRAGHYDAAVLTASSQARALAPLLGLPPPSTRVVTIGAPTAATASRQGIAVAAQASS PTPDAIVRALIDALDRPAQADAPEERDS >gi|292819787|gb|ACYT02000085.1| GENE 15 10908 - 11408 260 166 aa, chain - ## HITS:1 COG:Cgl0413 KEGG:ns NR:ns ## COG: Cgl0413 COG0181 # Protein_GI_number: 19551663 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Corynebacterium glutamicum # 2 153 152 297 302 84 43.0 7e-17 GTGERLDAVVLALAGLRRIGLDAHATDVLHPAIMMPAPSQGALAIETRDEDDPLLHALLG TLNHRPTALAASAERAVLSALGAGCAAPVGAFARVDEASSVLLLDARVMSVDGRERVKAR GSLALTDSVGLDEAARLGEDVARQLLAGGAAEVTDLGATKAPRQSS Prediction of potential genes in microbial genomes Time: Tue May 17 07:25:51 2011 Seq name: gi|292819784|gb|ACYT02000086.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.19, whole genome shotgun sequence Length of sequence - 913 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 530 322 ## COG0181 Porphobilinogen deaminase 2 1 Op 2 . - CDS 527 - 913 361 ## COG1232 Protoporphyrinogen oxidase Predicted protein(s) >gi|292819784|gb|ACYT02000086.1| GENE 1 2 - 530 322 176 aa, chain - ## HITS:1 COG:MA0582 KEGG:ns NR:ns ## COG: MA0582 COG0181 # Protein_GI_number: 20089471 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Methanosarcina acetivorans str.C2A # 7 163 2 154 317 126 46.0 3e-29 MTTRTFVLGTRGSRLALAQSTTVARAIEEAGARLGEEVRVNLEVVRTHGDVSAEPLAALG GVGVFAAQLRLALLGGECDLAVHSFKDLPTAPTPGLRIAAVPQREDPRDALCAADGATLA SLPEGALVGTGSPRRAAQVLAARPDLFVCDLRGNVPTRLSRVRGLDLGADAGTAPS >gi|292819784|gb|ACYT02000086.1| GENE 2 527 - 913 361 128 aa, chain - ## HITS:1 COG:Cgl0431 KEGG:ns NR:ns ## COG: Cgl0431 COG1232 # Protein_GI_number: 19551681 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Corynebacterium glutamicum # 3 128 320 447 448 59 32.0 2e-09 GPVAAKALSHLNVKWPWLADQLPPHTHLLRLSYGRLGEAEPAVTVEGALRDIRTLTGVTI AAEAVTDHLLARWNGTLPPLPPEYRGCVRALEEQVRPLGGVALTGAWVAGTGIASVVTHA RAGAKGLL Prediction of potential genes in microbial genomes Time: Tue May 17 07:25:55 2011 Seq name: gi|292819773|gb|ACYT02000087.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.2, whole genome shotgun sequence Length of sequence - 11069 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 7, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1363 1734 ## COG0215 Cysteinyl-tRNA synthetase 2 2 Tu 1 . - CDS 1503 - 2960 2086 ## COG0498 Threonine synthase 3 3 Op 1 . + CDS 3175 - 4575 1192 ## gi|293194134|ref|ZP_06609935.1| putative Hsp70 nucleotide exchange factor FES1 4 3 Op 2 . + CDS 4586 - 6139 785 ## gi|293194135|ref|ZP_06609936.1| conserved hypothetical protein 5 3 Op 3 . + CDS 6155 - 6646 417 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 4 Op 1 . - CDS 6759 - 8108 1924 ## COG2270 Permeases of the major facilitator superfamily 7 4 Op 2 . - CDS 8187 - 8363 96 ## 8 5 Tu 1 . + CDS 8284 - 9072 566 ## gi|293194138|ref|ZP_06609939.1| conserved hypothetical protein - Term 8999 - 9048 3.5 9 6 Op 1 5/0.000 - CDS 9146 - 9862 252 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 10 6 Op 2 . - CDS 9846 - 10364 801 ## COG1329 Transcriptional regulators, similar to M. xanthus CarD - Prom 10395 - 10454 2.7 11 7 Tu 1 . - CDS 10655 - 11032 463 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|292819773|gb|ACYT02000087.1| GENE 1 1 - 1363 1734 454 aa, chain - ## HITS:1 COG:Rv3580c KEGG:ns NR:ns ## COG: Rv3580c COG0215 # Protein_GI_number: 15610716 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Mycobacterium tuberculosis H37Rv # 2 454 7 433 469 405 49.0 1e-113 MLHLYDSKSARVQPLTPVTPGKVGIYLCGATVQGSPHVGHLRAAVSFDTLIRWLRRSGYE VTYVRNVTDIDDKILHKSAEAGWDWWAWAYRFEREFTQAYETLGVQAPTYEPRATGHIPE QLDLVQSLIDAGHAYSDGHGNVYFDVHSQADYGSLTRQRLADMRTTEDDAQIDEAVEAGK RDPRDFALWKATKPGEPATASWDSPWGRGRPGWHLECSAMSRRYLGDEFDIHGGGIDLRF PHHENEQAQSHGAGWEFARLWVHNAWVTTKGEKMSKSLGNVLSIGALTEEYPAVAVRWAL STVHHRSSIEWGAETLPAAHAAWEKFSTFVARAIETAGEAPASEIALAPADLPEAFVAAM DDDLNVAGALAVLHEHLKAGNAALAAGDVSGVYREQILVRSMLDVLGLDPASEQWRGQAG IGAGASGAAAAEHSALDALVQAVLEERAAARAAK >gi|292819773|gb|ACYT02000087.1| GENE 2 1503 - 2960 2086 485 aa, chain - ## HITS:1 COG:Cgl2171 KEGG:ns NR:ns ## COG: Cgl2171 COG0498 # Protein_GI_number: 19553421 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Corynebacterium glutamicum # 1 477 1 471 481 558 62.0 1e-158 MRYISTRRGPNTPTRSFSDILLEGLAPDGGLYLPEEYPTLSQSDLDELRIVLREDGYAAM AAGIISLFVDDIGADDLSAITARAYRTPAFSDPQIVPVDALEGTDLHLAHLSNGPTAAFK DMAMQLLGELFEYELTRRGDWLTIVGATSGDTGSSAEYALRGRRGLSVVMLTPAGRMTAF QRAQMFSLLDENIVNVAVDGVFDDCQDLVKAVNMDADFKATWHVGAVNSINWARLLAQVC YYVATWLRVTEEGADASSKVSVVVPSGNFGNVCAAHIARQMGVPLGTLVVATNENDVLDE FFRTGVYRPRSSADTLATSSPSMDISKASNFERFIFDLLGRDGDATRALFDDALARDGYF DLSGTPEFSSLRDTYGFTSGTSSHADRLAEIARTEKESGYLLDPHTADGVHVARALRSQI EGPLVVMETALPVKFAETIQEATGHLPPVPERFEGIEGREERVTPLANSAEDLKALIAAR VRPGA >gi|292819773|gb|ACYT02000087.1| GENE 3 3175 - 4575 1192 466 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194134|ref|ZP_06609935.1| ## NR: gi|293194134|ref|ZP_06609935.1| putative Hsp70 nucleotide exchange factor FES1 [Actinomyces odontolyticus F0309] # 1 466 31 496 496 842 99.0 0 MFATPNAFRAPAPGTVPASAPASHGKKLRWWHVALIALLTVIAMVAGVMFFATKAPRVAP SPRGQGYTGSGTLTGTLASSWANGVDVAWNLDEFSAYVDDYDAPSLLVEGTTLYVAARSD SEGHAVAAAYDISGAKPEKLWLKESSDATVTKRSDAQTLASAGDSLAYNDVVIDKKTGAI AQAPWPGDVPMAAADDILVTCSGMETCAGWKQESGSWKQQWKSVTSRQGRDLALEAPNKT RMMGSGEDASFLLSAEDGFAPQIINIHTGTVTTLGGDAPAKKFESRGFLIASDGYINVSD YDKADVYDMTGKLVETIDYERMWAVPTSDGPAPSLDQLRSYLKDSKAPWATGTIEMTGSK CTTATLILSSDAMPRSAYGVKDMSISDSEPCLFSPLDVRASADGAALFISEAGSPSNQRV YFANTNTKEAHTSKDLNGAHSLTWAYDDLVIGMTKQGVVAFTPASA >gi|292819773|gb|ACYT02000087.1| GENE 4 4586 - 6139 785 517 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194135|ref|ZP_06609936.1| ## NR: gi|293194135|ref|ZP_06609936.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 517 1 517 517 961 100.0 0 MSNDSSRWAPPDADSNPAPGSEPKTQSATEQPGDRAASTGASPAPASAPRKGARPPRTRT NPERIAGHQAYIRLQRKKAALIVATSLAVIAFLFALPRFITAIPQPTAKPVASQGYKGSA TNTNILSSDWAAGVSVAWTVPEPRTGIDKPSETTLFADGTTLYMVSRDLHSHSISLAAID VSSSEPAVLWTSNDGSMQVPYSGIDFSIVSVGEWLAVENILISKATGIQTQAPWEDGHPI TMVDDILVTCSGMETCAGWKQESGSWTRQWQSITGKQSRNSSLSRWDGPRTIGTGEEASA LVPVDDYRNPQIVNVYTGVVTPFGQEGRLANARSYSYNALYPASDGLIVRKNATLLEKFD MSGNSLGTFGPSLKYIIPAEDGRMPTLSEWDAFFDSGRTPWTTGMLEATGDRCQTLTVHT SGGVAKYSAEGLVGVSSSTRPPCSFSPTHARASADGTAAFILNIGYKEQTVCFFDMANNK THTSTELRAARNHTWVFDDLLVGLTDEGLIAFTPTSS >gi|292819773|gb|ACYT02000087.1| GENE 5 6155 - 6646 417 163 aa, chain + ## HITS:1 COG:Cgl2606 KEGG:ns NR:ns ## COG: Cgl2606 COG0245 # Protein_GI_number: 19553856 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Corynebacterium glutamicum # 7 162 8 160 160 137 48.0 8e-33 MTDLPFRIGQAVDVHAFAAPDSPRPLMVACLEWPGERPLEGHSDADVAAHALCDAMLLAT GLGELGTVFGVDRPEWAGASGRALLEEVRRMTAEAGWVLGNATVQVVGNRPRMAARLPEA CAVMSEIAGGTVTVSATTSDHLGFTGRGEGVAALANALMVRAE >gi|292819773|gb|ACYT02000087.1| GENE 6 6759 - 8108 1924 449 aa, chain - ## HITS:1 COG:Cgl2562 KEGG:ns NR:ns ## COG: Cgl2562 COG2270 # Protein_GI_number: 19553812 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 16 438 18 434 440 308 42.0 2e-83 MSATPATPHRVITRKVVDWAAWDWGSAAFNAVATTFVFTTFLTSDGVFTDSGTASTWLSN GMTIAGIFIALLAPITGQRADRQGKGGVWLGWFTGAVVACMLAMYFVHPASVLGPQGALM LGIALLGLGNVFFEFASVNYNAMINHLGEKEDRGKISGFGWASGYIGGIVLLLILYVGLI GVNLLGVPTDDHLNIRISMVIAALWFGGFAIPVIVNPPLPKKVLIGGGSESIIDSYKLLW RTVRTLKREAPHTLFFLIASAVFRDGLAGVFTFGAVLAKTAFGFSASEVLIFAIAANVVA GLATVAFGWVDDKIGPKKVIILSLCAMVVAGFGVFFLHARGPIVFWSLGLVLCVFVGPTQ SASRSFLSRIIPAGREGEVFGLYATTGRAVSFMAPAMYSLFLLLGKRMTPAGQDYTYWGI LGIMLILGAGLALTIPVKADRATLDHMEG >gi|292819773|gb|ACYT02000087.1| GENE 7 8187 - 8363 96 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGRTKLLALAYCLSASEGLTSVLRAIVFSFQGDIPAYDMWSGRAGGSPASSLGRPEE >gi|292819773|gb|ACYT02000087.1| GENE 8 8284 - 9072 566 262 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194138|ref|ZP_06609939.1| ## NR: gi|293194138|ref|ZP_06609939.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 262 9 270 270 481 100.0 1e-134 MARSTLVSPSEADKQYAKASNLVRPAIFFLVTAVIFLLLSGYIPGGIALFFSVYCLLLGI ASAFLAVTQMLRRYDRWIVHVEGKGISIRPTLALVRVKQIAFGIGIACAPIAIIIEVLVT HSAVGTVLSLITGLMFSTMFYFMFMSSPHRLWLIHQGPIIEFTPEDVAFRSLIDKSATRI PWDRHPTVKGFSPIPDTGDQLPLMYVSADGANRDMEFDMTGIPIPLSRVDSLVTYFNNRP EKLAMLASSEGARMACAILTAR >gi|292819773|gb|ACYT02000087.1| GENE 9 9146 - 9862 252 238 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 9 232 6 223 234 101 33 2e-21 MPSKSESCAVLTAAGSGSRLCCEGPKALVELSGRPLVWWAARGLRAGGVGAIVVTAPASS IEEFRSALSDIDDLTVVAGSDRSRQESVALGLAALGRCEADTVVLVHDAARPLTPPQVTA RVIDAVRGGAGAVIPVLPVTDTLKTVDASGVVVGTPRRSEMVAVQTPQGFRWDVLIRAHE EGASLGADEAWAATDDAGLVEAIGGTVHTVAGDERSMKVTRPLDLALAQILVAEEATA >gi|292819773|gb|ACYT02000087.1| GENE 10 9846 - 10364 801 172 aa, chain - ## HITS:1 COG:ML0320 KEGG:ns NR:ns ## COG: ML0320 COG1329 # Protein_GI_number: 15827084 # Func_class: K Transcription # Function: Transcriptional regulators, similar to M. xanthus CarD # Organism: Mycobacterium leprae # 1 159 4 162 165 180 62.0 1e-45 MSFEIGQTVVYPHHGAATIEEVMTRTIRGEERTYLKLRVNQGDLEIQVPAENVDMVGVRD IVDEDGLEEVLSVLRAPYIEEPTNWSRRFKANQEKIATGDIVKVAEVVRDLTRRDDLKKL STGEKRMLTKARGILTSELALARNIEKSAAAERLDAVLAEGRIEVEEDAVEE >gi|292819773|gb|ACYT02000087.1| GENE 11 10655 - 11032 463 125 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 121 98 215 216 110 48.0 6e-25 MCPNLAQQQEMLQILMDAKPAGAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCI DNGATEQVFGHLKDEFFRGQDWQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQA LQEAA Prediction of potential genes in microbial genomes Time: Tue May 17 07:26:47 2011 Seq name: gi|292819764|gb|ACYT02000088.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.20, whole genome shotgun sequence Length of sequence - 5569 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 1 - 958 949 ## COG1232 Protoporphyrinogen oxidase 2 1 Op 2 . - CDS 955 - 2052 868 ## COG0407 Uroporphyrinogen-III decarboxylase 3 2 Op 1 . + CDS 2073 - 2222 57 ## gi|293194182|ref|ZP_06609945.1| conserved hypothetical protein 4 2 Op 2 . + CDS 2294 - 3616 889 ## COG0373 Glutamyl-tRNA reductase 5 2 Op 3 . + CDS 3613 - 4563 1246 ## COG2962 Predicted permeases 6 3 Tu 1 . - CDS 4726 - 4959 110 ## gi|293194185|ref|ZP_06609948.1| putative transposase protein Predicted protein(s) >gi|292819764|gb|ACYT02000088.1| GENE 1 1 - 958 949 319 aa, chain - ## HITS:1 COG:Rv2677c KEGG:ns NR:ns ## COG: Rv2677c COG1232 # Protein_GI_number: 15609814 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Mycobacterium tuberculosis H37Rv # 15 265 8 257 426 70 30.0 3e-12 MNPLAAIPSHPGAVVVGGGIAGLVSAWELARAGVRPLLIEARGYLGGLIARGTVGGANVD LGAETYVVRGTDTSSIVEALGLTSVEPAGSGARLYAPALRGGWELRPFLRDSFLGIPAHP DAPDCAHVLGEAGVRRALEDRSMGGGIGMDEAGETLAGFVAARMGEAVLERSVRPIIAGI YTADPSVLATDTVAPGLRADTARHGSLAAAVAARLAAAGSRRTPEACVEGGMFVLVDALR AAIEEAGGTVLTRAGAFSLRREAAGWTLECGPTKPGPTPGAEPVPSGPGVSVTTERLVLA CSANASLRLLTEARIPGLV >gi|292819764|gb|ACYT02000088.1| GENE 2 955 - 2052 868 365 aa, chain - ## HITS:1 COG:BS_hemE KEGG:ns NR:ns ## COG: BS_hemE COG0407 # Protein_GI_number: 16078076 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Bacillus subtilis # 17 365 23 347 353 273 42.0 3e-73 MTTPPLIAALTGQRGPTPVWFMRQAGRSLPEYRELRADVGLPMLEACLRPDVAAEATVQP VRRHGVDAGIFFSDIMVPLRLAGVGVEIEPGVGPVLDHPYRTRESIDELLSHRYGEGSWT DSTGRARDCAEGAQSVRDGVATAVRELGSTSLIGFGGAPFTLAAYMVEGRPSRDHMAARS LAASDPGAWDALMNWCAWVSADFITAQIEAGASAAQLFDSWVGSLSPRTYRESVAPYSRL VAQRVAGAVSPVTGERAPLIHFGTGSAPILADMAEVGADCVGVDWKTDLSWAVTQVPGKA VQGNLDPALLQAPWNVIEQAVRDILDAGRSASGHVFNLGHGVPPTTDPDVLTRIVELVHE LGDER >gi|292819764|gb|ACYT02000088.1| GENE 3 2073 - 2222 57 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194182|ref|ZP_06609945.1| ## NR: gi|293194182|ref|ZP_06609945.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 49 1 49 49 72 100.0 7e-12 MYSCVNSRISVVFQSSSRQFLTRRKRLILRAFMSIYPQESTIYFVNIPK >gi|292819764|gb|ACYT02000088.1| GENE 4 2294 - 3616 889 440 aa, chain + ## HITS:1 COG:ML2422 KEGG:ns NR:ns ## COG: ML2422 COG0373 # Protein_GI_number: 15828304 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Mycobacterium leprae # 1 407 1 431 467 129 30.0 1e-29 MTIHVLSADHRYTPLDDIARLSGADDLGPTLMRSLPKARGVMVLRTCNRVTVYVDAPASA NPHALKDAVERELAQASHAQREDVHLRHLWGRDGLVDLFSTAAGLESMVIGEREIAGQMR RAAHTAWEDGTLSCDLGRAAERASATSRRVATETGLAGAGRSVVAVGLDMAAAHLRPWEG ARVLIVGTGAYAGATVSALHALGASDVAVYSTSGRAREFAEGRGIGWVDAAGLPSALERA HLVVTCRGLGSPVLTRDMAAQAGRTVVLDLALMRDTESSVASLPNITLIDLPTIQASVPA VDADALTRARAIIDEEVSSFERGLGARSMDPVVRHLRSRVFRIVEEEIDRLGEDPLSTDD AARALRHLAARLIHNPTVMARRAGEESQQERYLEALGVVLGIDETALISGDDAAPHSFSP GDHGRSRGGVCPHDVHTLGA >gi|292819764|gb|ACYT02000088.1| GENE 5 3613 - 4563 1246 316 aa, chain + ## HITS:1 COG:PA0485 KEGG:ns NR:ns ## COG: PA0485 COG2962 # Protein_GI_number: 15595682 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pseudomonas aeruginosa # 6 298 5 286 298 172 41.0 7e-43 MSTQKNEPRALALGVSCYVIWGFFPLYFSLLSPAGAVEVIVHRAVWGLFFCVVALAVTGS LGKIRALIADRGALWRLAVAGGLVVINWSVYVYAVLAGHTTDAAVGYFINPLVTIALGLI VLHERVTPIQKVALALGVVAVVILVIGQRAVPIVSLTLALSFGLYSLVKKDVAARVDPLA GMAIETAAVSPLLLGYYAYLAATSSTSFHTIASSDDSGVSWVIHLALLLGAGALTMIPLI MFASAARGLTLGTMGFLQYLGPTLQLLVAVFIFHETVPTFRWIAMGVVWVALACLSADWL LSSVRAKRLARTDHQD >gi|292819764|gb|ACYT02000088.1| GENE 6 4726 - 4959 110 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194185|ref|ZP_06609948.1| ## NR: gi|293194185|ref|ZP_06609948.1| putative transposase protein [Actinomyces odontolyticus F0309] # 1 77 1 77 77 110 100.0 3e-23 MCFSVAEVMVVSMVAVWGRALVMAVSRWPASAVAVVMVVSQLPRGCVLCANKFAQRTRKG LESAVCGVLGEFFAKTP Prediction of potential genes in microbial genomes Time: Tue May 17 07:27:00 2011 Seq name: gi|292819747|gb|ACYT02000089.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.3, whole genome shotgun sequence Length of sequence - 12558 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 10, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 160 82 ## Elen_1126 transposase and inactivated derivative - Prom 244 - 303 1.9 - Term 327 - 387 16.0 2 2 Tu 1 . - CDS 422 - 1198 1244 ## COG0588 Phosphoglycerate mutase 1 3 3 Tu 1 . + CDS 1431 - 2642 1831 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 4 4 Tu 1 . + CDS 2814 - 4022 1121 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 5 5 Op 1 . + CDS 4194 - 5399 1194 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 6 5 Op 2 . + CDS 5450 - 5914 830 ## gi|293194236|ref|ZP_06609958.1| putative lipoprotein - Term 5963 - 6011 15.2 7 6 Tu 1 . - CDS 6020 - 6349 571 ## Svir_17040 hypothetical protein + Prom 6370 - 6429 1.9 8 7 Op 1 1/0.000 + CDS 6475 - 7038 478 ## COG1846 Transcriptional regulators 9 7 Op 2 . + CDS 7029 - 8276 1147 ## COG0038 Chloride channel protein EriC 10 8 Op 1 . - CDS 8348 - 9550 1338 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 11 8 Op 2 . - CDS 9624 - 10667 1277 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Term 10758 - 10798 14.3 12 9 Tu 1 . - CDS 10856 - 11326 980 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 11513 - 11572 3.1 13 10 Tu 1 . - CDS 11901 - 12377 -185 ## gi|293194244|ref|ZP_06609966.1| conserved hypothetical protein Predicted protein(s) >gi|292819747|gb|ACYT02000089.1| GENE 1 1 - 160 82 53 aa, chain - ## HITS:1 COG:no KEGG:Elen_1126 NR:ns ## KEGG: Elen_1126 # Name: not_defined # Def: transposase and inactivated derivative # Organism: E.lenta # Pathway: not_defined # 1 53 55 107 167 75 75.0 6e-13 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGG >gi|292819747|gb|ACYT02000089.1| GENE 2 422 - 1198 1244 258 aa, chain - ## HITS:1 COG:ML2441 KEGG:ns NR:ns ## COG: ML2441 COG0588 # Protein_GI_number: 15828319 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Mycobacterium leprae # 18 254 9 245 247 317 63.0 1e-86 MYEEGWNLWDNGDMSYKLVLLRHGESEWNAKNLFTGWVDVPLSDKGRAEATHGGELLKEA GVKPDLLFTSMLRRAIMTANLALDAADRHWIPVERNWRLNERHYGALQGKNKKEIRDEYG EDQFMLWRRSFDVAPPAIEAGSEYSQDTDPRYAGEPVPMSECLKDVIARLLPYWDETIVP AIKTGKTVMIAAHGNSLRAIVKHLDEISDEDIAGVNIPTGIPLVYELDEETLKPIKKGGT YLDPEAEAKIAAVANQGK >gi|292819747|gb|ACYT02000089.1| GENE 3 1431 - 2642 1831 403 aa, chain + ## HITS:1 COG:FN1124 KEGG:ns NR:ns ## COG: FN1124 COG2885 # Protein_GI_number: 19704459 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Fusobacterium nucleatum # 92 401 2 313 315 179 38.0 6e-45 MIITRRTLTASVLVAATTLALGACGSSKPQTPAAAPTAEATTAAPTQSATPASVPTVPGY RPGEIPPIPLFSVPAIDVFASNADKAVVQAASSSLASVPGVTVSPAKCDGTSLVSGSTVL GGDGSAVSSSDKGTVVNDGTGSGVITEGPISIIYGGDGSGTYSNADTMVTITVEADGSGT YSTTTTSIILDGNGGGNYSNANSMESIINNGDGSGQFSKGTVTIINNGDGTGSYSDEKLT IQNNGNGTATVNGVTVNDAPKVEKVSKLGKFPAVESLKPVESCGTVITLEDGVLFDFGKS DIRPEAAQTLKSLAGVLNNAKVPTAHIYGHTDSISDEAFNLQLSQERADAVSAELKKDGV SAILDATGYGESKPVAPNENADGSDNPAGRALNRRVEIFIPAF >gi|292819747|gb|ACYT02000089.1| GENE 4 2814 - 4022 1121 402 aa, chain + ## HITS:1 COG:FN1124 KEGG:ns NR:ns ## COG: FN1124 COG2885 # Protein_GI_number: 19704459 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Fusobacterium nucleatum # 90 400 2 313 315 163 36.0 6e-40 MNTARSTLTVITLAAATTLALGACAASKPQDPAASQSAATSTPSPSTSTDTIPTVPGYRP GEIPPVPLFSVPAIDVFASNADKAVIQTASSSLQSVPGITVSPAKCDGNVLISGSTVFGS DGSASTSTGNGVIINNGDGAGTIVEGDVSINYGGDGSGTYVDNSDAYIYLIVNSDGTGSY RSRTLSISLNDNGGGFYDNSETDETIYIKGDGSGNYKTPSTSIINNGDGSGLYISENLRI TNNGDGTAFVNGVRITDAPRVEPLPALGKFPPVESLKPVESCGTVITLEDSILFDFGESD IRPDAAHTLSKLATVLNDAKVPAAHIYGHTDSVSDEAFNQKLSEDRANAVSAELKKDGAS AILDATGYGESKPVAPNENADGSDNPAGRALNRRVEIFIPAF >gi|292819747|gb|ACYT02000089.1| GENE 5 4194 - 5399 1194 401 aa, chain + ## HITS:1 COG:FN1124 KEGG:ns NR:ns ## COG: FN1124 COG2885 # Protein_GI_number: 19704459 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Fusobacterium nucleatum # 90 399 2 313 315 163 36.0 7e-40 MNTARSTLTVITLAAATTLALGACAASKPQDPAASQSAATSTPSPSTSTDTIPTVPGYRP GEIPPVPLFSVPAIDVFASNADKAVIQTASSSLQSVPGITVSPAKCDGNVLISGSTVFGS DGSASTSTGNGVIINNGDGAGSIVEGPITITYGGDGSGSYVNSDTHVSLFILSDGGGTYS AGPVSVFIDSRGYGNYSNSETDESIVNNGDGSGNYSVGKTLIYNNRDGSGSYSDGTLSII NYGDGTALVNGVTITDAPRVEPLPALGKFPPVESLKPVESCGTVITLEDGVLFDFGKSDI RSDAAHTLSKLATVLNDAKVPAAHIYGHTDSISDEAFNLQLSQERADAVSAELKKDGVSA ILDATGYGESKPVAPNENADGSDNPAGRALNRRVEIFIPAF >gi|292819747|gb|ACYT02000089.1| GENE 6 5450 - 5914 830 154 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194236|ref|ZP_06609958.1| ## NR: gi|293194236|ref|ZP_06609958.1| putative lipoprotein [Actinomyces odontolyticus F0309] # 1 154 15 168 168 168 100.0 8e-41 MSLKSFLPAAAALAVATVALTGCTQTANVSGDDSSAPAASSTPEASSNPRTDTKTDSSTD SGKSDAAGAFTVNESNAHVEIPAGTKTVVVNGSNNHIEGEAVSEITINGSQNSVEVKSAD KVSFTGSNNAVQYDDGKAPQVGSDSGANNVVSKD >gi|292819747|gb|ACYT02000089.1| GENE 7 6020 - 6349 571 109 aa, chain - ## HITS:1 COG:no KEGG:Svir_17040 NR:ns ## KEGG: Svir_17040 # Name: not_defined # Def: hypothetical protein # Organism: S.viridis # Pathway: not_defined # 8 107 7 116 121 90 47.0 2e-17 MKKTKKIVEIVDDFDGTPADQTVRFAFNGASYEIDLSREHFEEFAEAIQPYIKAGRKVGS TRRRGNAGNPTQRLENAKIRAWAKEEGLELSDRGRIPAPIVEAYRKARA >gi|292819747|gb|ACYT02000089.1| GENE 8 6475 - 7038 478 187 aa, chain + ## HITS:1 COG:Cgl2461 KEGG:ns NR:ns ## COG: Cgl2461 COG1846 # Protein_GI_number: 19553711 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 46 187 21 162 164 68 33.0 8e-12 MRCIDLYLGLIESYTRRQPEADLASPGSIERGDPVSRAHHPRAAAWELYFTTTARLTERI EAALKCKAGLSMPEYSVLLMTDRAGEEGVRPSLLAHQVVFSRSRLTHTMKRLESRGLIER RPCEGDGRGGLVSLTPAGKTLFDEAALVQRDVIRRLFLDDITPEEIDMLTGLFTRVSERL DSDTPCP >gi|292819747|gb|ACYT02000089.1| GENE 9 7029 - 8276 1147 415 aa, chain + ## HITS:1 COG:NMB0982 KEGG:ns NR:ns ## COG: NMB0982 COG0038 # Protein_GI_number: 15676874 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Neisseria meningitidis MC58 # 30 401 1 374 380 179 35.0 1e-44 MSVSTRRLAVATLLTGIIAGLVGLACIHLLHWIQAIAWDMHGGTLLEAVSAVSPARRVGI LTLAGVVGALSWFLLFRRNTAVTSVSGAVGGTPMPPLRATWHALTQVLIVGLGASVGREV APREMAAAFSAAAADRLGLTPEDRRIIVACGAGAGLAAVYSIPLSGTIYTLEILLVSLSA RAVAPALITSGIAVLVSTGFTRPAFFYTVPTLTPSLSLTVFGALIGPVLGAAGRAFKEAV ARTGAIRPRDWRILITLPFAFVVVGLVSTRIPSVLGNGQASAQTQFDATWAAGAGLTFAL LILLAKTATTFLTIGAGGWGGVLTPAVALGAGLGAVIGLPWAAAWPGSEIAAFAFIGAAA FLGTSMKAPFTGLILVIEFTGQGATILVPTVLAVGGATAAATWLSHRTSVGRSAR >gi|292819747|gb|ACYT02000089.1| GENE 10 8348 - 9550 1338 400 aa, chain - ## HITS:1 COG:Cgl2392 KEGG:ns NR:ns ## COG: Cgl2392 COG0626 # Protein_GI_number: 19553642 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Corynebacterium glutamicum # 4 397 5 383 386 358 47.0 1e-98 MSTPDCTTFSTLAIHAGFDPDSITGDVVPPIHVASTFVQDRPGELREGYEYGRCGNPTTN AFAGALAALEAATHGFAFPSGMSAEDTVIRLLARPGDHVVHSTDVYGGTHKLLSVIKPAE GITSEAVDLTDLAEAERVIRGSRPQIVWVETPSNPFLLVTDIAAIAALTHEVGGLLIVDN TFATPVLQHPLKLGADVVVHSTTKYVGGHSDVVGGAFILRDGLELPAHVDPFFGERDAAA EAVKLQMALGHVPSPRDTYLAHRGLKTLALRVERHCENAQKVAEFLATHPKVTAVHYPGL ASDPGHELAQRQNPAGVGGVLSFQVATEESAIELTTRTRVFALAASLGAPESLIEHPAIM THSTRVGGVGGVPGTLLRLAVGLEDVNDLIADLDQALAQI >gi|292819747|gb|ACYT02000089.1| GENE 11 9624 - 10667 1277 347 aa, chain - ## HITS:1 COG:YPO3117 KEGG:ns NR:ns ## COG: YPO3117 COG0276 # Protein_GI_number: 16123282 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Yersinia pestis # 21 340 3 317 320 275 44.0 1e-73 MTNSQDAAATTSTSIHAHHGEAQPALVLVNLGTPTAPEPGPVRAFLREFLSDRRVIEMSP LLWKPILEGIILRVRPREVAGKYRSIWMDEGSPLMHYTREQARLLGERLPGVRVEVAMRY GQPSIGSVLDRLHADGVRRVAILPAYPQYAASTVTTINDAVASWIGRNRDGFELRLHRSF PAAPAYIEALATALERHWERVGRPNFLTGDRVVVSFHSIPVAMDEAGDPYRAECRHTVAS LESRLGLAMGSLTATFQSVFGRAEWLGPQTIEEMAELGAAKCPRVDVICPGFMADCLETL EEIDQLNRETFVEAGGGDFHYVPWGNDSEGAVASLEEQARIALAGWV >gi|292819747|gb|ACYT02000089.1| GENE 12 10856 - 11326 980 156 aa, chain - ## HITS:1 COG:slr1894 KEGG:ns NR:ns ## COG: slr1894 COG0783 # Protein_GI_number: 16329942 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Synechocystis # 14 153 16 155 156 67 31.0 7e-12 MTVESTGFKASDVLAGNLQKVLTDVTALSLVGKQLHWNITGEGFRSLHLYLDEVVDIARE ATDEIAERMRALQVVPNGLPEVVAQRNTLPTVPETIIKTSDAEELAVAAINATVGTMRDV HEKVDAEDSASADILNDFIRRFEQQAWFIRSQNGQA >gi|292819747|gb|ACYT02000089.1| GENE 13 11901 - 12377 -185 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194244|ref|ZP_06609966.1| ## NR: gi|293194244|ref|ZP_06609966.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 158 61 218 218 273 99.0 3e-72 MRLGPVDRVARLSETAVTFAGVGRASIETAVTFAGEKWVFLVQFSGAEVMPVSAVPCWGR AVVVLVSMSPRCRAWCAIFFALLGLMVGVSATKFAQRAQIGPNSAFLRSLGEFFCGNAAG GAVLGVFFRDPAAVGACGRTLLPRGTGTRAHLLAASTL Prediction of potential genes in microbial genomes Time: Tue May 17 07:27:25 2011 Seq name: gi|292819727|gb|ACYT02000090.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.4, whole genome shotgun sequence Length of sequence - 20059 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 13, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 488 -320 ## gi|293194244|ref|ZP_06609966.1| conserved hypothetical protein - TRNA 610 - 682 83.9 # Thr CGT 0 0 - Term 748 - 787 1.6 2 2 Op 1 . - CDS 798 - 2414 1810 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 3 2 Op 2 22/0.000 - CDS 2451 - 3641 1128 ## COG0470 ATPase involved in DNA replication 4 2 Op 3 . - CDS 3641 - 4456 1061 ## COG0125 Thymidylate kinase 5 2 Op 4 . - CDS 4456 - 7200 3773 ## COG0550 Topoisomerase IA 6 3 Op 1 . + CDS 7519 - 8544 1312 ## ECO103_3516 hypothetical protein 7 3 Op 2 . + CDS 8572 - 8841 579 ## gi|293194288|ref|ZP_06609974.1| transporter, solute:sodium symporter family + Term 8866 - 8914 10.0 + Prom 8981 - 9040 2.0 8 4 Tu 1 . + CDS 9092 - 10801 992 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 9 5 Tu 1 . - CDS 10755 - 10976 127 ## gi|293194291|ref|ZP_06609977.1| putative lipoprotein + Prom 11012 - 11071 3.1 10 6 Tu 1 . + CDS 11192 - 11488 101 ## jk0694 hypothetical protein - Term 11511 - 11570 4.4 11 7 Tu 1 . - CDS 11708 - 11905 73 ## + Prom 11820 - 11879 2.5 12 8 Op 1 6/0.000 + CDS 11904 - 12173 427 ## COG2161 Antitoxin of toxin-antitoxin stability system 13 8 Op 2 . + CDS 12176 - 12439 318 ## COG4115 Uncharacterized protein conserved in bacteria - Term 12477 - 12540 21.4 14 9 Tu 1 . - CDS 12548 - 14239 2162 ## COG2890 Methylase of polypeptide chain release factors + Prom 14215 - 14274 1.8 15 10 Tu 1 . + CDS 14318 - 15286 1283 ## COG2354 Uncharacterized protein conserved in bacteria 16 11 Tu 1 . + CDS 15449 - 16132 415 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - TRNA 17196 - 17285 55.7 # Ser CGA 0 0 + Prom 17420 - 17479 1.7 17 12 Tu 1 . + CDS 17510 - 19510 2889 ## COG1297 Predicted membrane protein + Term 19575 - 19635 16.0 + Prom 19659 - 19718 1.9 18 13 Tu 1 . + CDS 19802 - 20057 109 ## Elen_1126 transposase and inactivated derivative Predicted protein(s) >gi|292819727|gb|ACYT02000090.1| GENE 1 2 - 488 -320 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194244|ref|ZP_06609966.1| ## NR: gi|293194244|ref|ZP_06609966.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 1 162 6 167 218 258 98.0 1e-67 MVDLEARPGPAAAHGHRSQALRSLRCPSHQWGWVAVIWFGASSRSPARPRRRPRVLRLGP VDRVARLSETAVTFAGVGRASIETAVTFAGEKWVFLVQFSGAEVMPVSAVPCWGRAVVVL VSMSPRCRAWCAIFFALLGLMVGVSATKFAQRAQIGPNSAFL >gi|292819727|gb|ACYT02000090.1| GENE 2 798 - 2414 1810 538 aa, chain - ## HITS:1 COG:MT2281 KEGG:ns NR:ns ## COG: MT2281 COG0596 # Protein_GI_number: 15841715 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 64 537 55 518 520 236 35.0 6e-62 MKTRSIAACAVAVLAVVAIVLTVVGYYGTQRRGPAPSTTASATSAPIPVSAGSVQAYYDQ AIEWGVCADGTFDTFQGVNSSDASEYQCAFLKAPLDWENPDGDQITLALAIHRSGAKEAP ALFINPGGPGGAVVSSLPYYATQGIGEAVVNAYDIVALDPRGVGDSTPVFCTTDAERDER NAGEDEDDTPGDESPQSAVASAREDAQEVAAGCREHSGSLYEHIDTVSAARDFDMVRAVL GQEKLNLLGYSYGTFLGATYAGLFPERVGRFVLDGALDPTLSVNEVSALQMRGLDASLQH WISDCATQATCPMGRNLQEGIETVRSFLDSLEDNPMRTNDPNRPLTENLAVTALTGAMYN TQWWPQLTQAFGMAWQKNDGSGLLAIADTLNSRNPDGTYQDNSFDAINAINNLDYSPEGT IEQWAAQVETLKDELPILGKYVGYPSASLEGWPTKHAPRSRITAQGADPIVVIGTTHDPA TPYSMAQGLSGQLASGVLVTVEGWNHTAYRRGANQCVTRAVEDYFVKGIVPTDGLMCQ >gi|292819727|gb|ACYT02000090.1| GENE 3 2451 - 3641 1128 396 aa, chain - ## HITS:1 COG:MT3747 KEGG:ns NR:ns ## COG: MT3747 COG0470 # Protein_GI_number: 15843256 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Mycobacterium tuberculosis CDC1551 # 3 392 7 399 404 220 40.0 3e-57 MSVWSSLVGQDAAVAKLDEAAASARAIVASRGGARASDDARSMSHAWLITGPPGSGRSVA ARAFAAALQCTGETVGCGQCAGCRTTMGRTNADVVFAATETSIINVETARSLVLQAQSSP SQGLWRVIVVEDADRLGESGANALLKAIEEPPEHTVWLLCAPSPEDMIATIRSRCRHLGL RIPTASAVADLLVREGVATPDVALEAARAAQSHIGLARALARDPQMRERRRAIITAPASV RSVGEAVMAADRLLETAKAQADAQVSERNAREKAELMRQLGMDEGESATKASRTMIRQLE EDQKRRSKRALTDAIDRALIDLLAIYRDVLMVQVGGDGELINTDLSDLVHEIAQDSTPRQ TLARVDHIETARKRLVSNGNPLLVLEDMAISLRPQA >gi|292819727|gb|ACYT02000090.1| GENE 4 3641 - 4456 1061 271 aa, chain - ## HITS:1 COG:DR0111 KEGG:ns NR:ns ## COG: DR0111 COG0125 # Protein_GI_number: 15805151 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Deinococcus radiodurans # 3 203 2 204 206 162 47.0 9e-40 MAARGVFITFEGGDGSGKSTQIQSVRDWFESRGREVIVTREPGGTELGTEIRRLVQNGPE DVDARTEALLYAADRAYHVATVIAPALERGAVVLGDRYIDSSLAYQGAARSLGVDEIASL SAWATRGLYPSLTFLLDLPPEVGLHRHTDAPDRMERESMDFHERVRHEYLRLADAEPDRI VVIDAVGTVDEVFSEIRGVLVERFEGGSVTIDEADDVVPVPAEEAPALSEAPEVPEAPEK LRDKSADKGSARKPATMVGALGESQGALWDE >gi|292819727|gb|ACYT02000090.1| GENE 5 4456 - 7200 3773 914 aa, chain - ## HITS:1 COG:Cgl0309_1 KEGG:ns NR:ns ## COG: Cgl0309_1 COG0550 # Protein_GI_number: 19551559 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Corynebacterium glutamicum # 6 594 15 604 608 617 58.0 1e-176 MSATKLVIVESPAKAATIEGYLGPDYHVTASIGHIRDLPQPSELPKDMKKGPFGRFAVNV DDGFAPYYVVNPDKKKKVTELKKLLKECDELYLATDEDREGEAIAWHLLQVLKPKVPVRR MVFHEITKEAIQRALENTRDLDTALVDAQETRRILDRLYGYEVSPLLWRKIRPSLSAGRV QSVATRLVVARERERMAHVSAQYWSIDTAFTSAGQAFGARVSSVDGHSIATGSDFSEKGE LSAKALKAGVLHLDQATARAYAQALSDAPASVIDSVTRKPYRRRPAAPFTTSTLQQEASR KLHWNASSTMRTAQSLYESGYITYMRTDSTALSSQAIHAAREQATQLYGAEAVAESPRLY GTTSKGAQEAHEAIRPAGDHFRTPGEVAGSLSKQQLALYDLIWKRTVASQMADALGYTAT IRVLTGIEVDGKRHDVLSSASGTVITSPGFRLAYQEGRDQGRYDTEKNDAEKTLPDVAEG DPATLTEATPDGHETQPPGRYTEATLVKTMEELGIGRPSTYAATIQTIGDRGYVTHRGQY LVPTWLAFSVTRLLEENLANLVDYDFTASMEGDLDRIAAGEENGTEFLTGFFFGPDGTGE NGGLRHDVASLGDDIDARAVNSIDLGHGVTLRVGRYGPYMEKADGTHANVPPEVAPDELT DELVDQLFSRAADDGRELGVDPATGHTIIVKDGRYGPYVTEVLPEAAEGGEEGAKKTKKA AAKPRTASLFKTMDIATVTLEDALALLSLPREVGTDPASGEVITAQNGRYGPYLKKGTDS RTLASEDQLLTITLDEALAIYAQPKTRGRGTARPPLREFGEDPISGKKVTVKDGRFGPYV TDGETNVTVPRAETVEDLTAERAYELLADKRAKGPAPKRTRKTAAKKTTTKKTTAKKAPA KKTATKKATTKKDS >gi|292819727|gb|ACYT02000090.1| GENE 6 7519 - 8544 1312 341 aa, chain + ## HITS:1 COG:no KEGG:ECO103_3516 NR:ns ## KEGG: ECO103_3516 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 115 288 311 486 520 96 31.0 1e-18 MLQNFLSNIPFPIWFAIGCVIVVLAAQKFKQAAARSKGAVPAPRDVRKAGKEGEWNKLNE HHTPKLRGKREDMATDPQARLLAPSMVYSLCNDEIVNQLKLSDPAGMRGMLDRDWGITDR ESLIRQIYSLLRAGHREDFAALRERCARPGWADTEIARLSKTADSSMEDWERRWRIRRFL DNDRGIQSLDFAAWDLIRAANLTRAGAGLGWLSEDEAWDTLAAINRALQFSYSSWEETWE AFRITRWLWAAEGDAQTANNDLHDRNRGEFLVGKNGLWTAIPWNAPYPAPHFILLDALRE MGALHLLSSSNWEDASAWEKDLDAQARTRAPMSIGGKAIVN >gi|292819727|gb|ACYT02000090.1| GENE 7 8572 - 8841 579 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194288|ref|ZP_06609974.1| ## NR: gi|293194288|ref|ZP_06609974.1| transporter, solute:sodium symporter family [Actinomyces odontolyticus F0309] # 1 89 1 89 89 166 100.0 4e-40 MSDQHFPTENEDTKPGGNTGSVHGEAPLIRKKEELTPEQYKRQRNNLILMALLVVLIIAA FAAFPYIKAALLGGVAFLAPVAGFAPLLF >gi|292819727|gb|ACYT02000090.1| GENE 8 9092 - 10801 992 569 aa, chain + ## HITS:1 COG:Cgl2090 KEGG:ns NR:ns ## COG: Cgl2090 COG0488 # Protein_GI_number: 19553340 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Corynebacterium glutamicum # 11 561 15 544 550 244 31.0 4e-64 MSTIVFSHVFFSYGTLPVLTNVSFTCGPADRLVVVGPNGIGKSTLLALAAGRLQPDSGTI AGPTLSATQLVPPILRPAATRSAPGVPLASRPPLAGDRESRTVAQLIDAATSGTRGLAAR FDFLTERLARDPSPRDEAEYDRVLAAMITRDAWTIDTRLEQTLEALDLGGLDRSRPLASL SPGQRARLHLALTLVDRPEALVLDEPTNHLDTDGREHLAHTIDNWQGPVLMTSHDRAFIE RTATALLDLDPTPWRALAIFKGEPADFGAYRVGGSYSDYLRDKAAARSRHTAIHADQQAE KHRLVSHQRDSTVVGHARFKPRTEIRMAQKYYADRAQTVSKRRINDDSRRLSVLAAHEVP KPRYDQGEFSFPHPMRTTTGGTSPHPHAMGIALAVRGASVEGRLAPTSFEACYGEHLLVA GPNGSGKTTLLEWIARGAPSGAHGCIDAASGVVLVPQVLPRPGDPLIPENAWYLGIGEAG KGFVPPAAWNRPLGELSAGNQRRAQLAFAARADAQILVIDEPTNYLDLNALESLEEALRR WTGTLVISTHDEWLITRWWGRLHRLDERR >gi|292819727|gb|ACYT02000090.1| GENE 9 10755 - 10976 127 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194291|ref|ZP_06609977.1| ## NR: gi|293194291|ref|ZP_06609977.1| putative lipoprotein [Actinomyces odontolyticus F0309] # 1 73 23 95 95 106 98.0 4e-22 MVEALVALAGDYGMRVSVPDELRPKMKGSSELAKALRALDALPDAPTDLPREASAALSAI VSRRADGGVPTSG >gi|292819727|gb|ACYT02000090.1| GENE 10 11192 - 11488 101 98 aa, chain + ## HITS:1 COG:no KEGG:jk0694 NR:ns ## KEGG: jk0694 # Name: not_defined # Def: hypothetical protein # Organism: C.jeikeium # Pathway: not_defined # 1 88 30 116 170 64 38.0 1e-09 MKTESTLYFDGQFWVGVIERHEADRVRAVRIVFGAQPSDAEFYEFLLAHANALLCGLDEA AWASDMAQRQATHDNPKRAQRQASRLARLKAKARHRGH >gi|292819727|gb|ACYT02000090.1| GENE 11 11708 - 11905 73 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGAPLLAYVQNIVQGVRVCVSGLLVMCGSTASVRGPVTAGVLARGLYRGVLHQGGSGLRV LDRNC >gi|292819727|gb|ACYT02000090.1| GENE 12 11904 - 12173 427 89 aa, chain + ## HITS:1 COG:AGc3659 KEGG:ns NR:ns ## COG: AGc3659 COG2161 # Protein_GI_number: 15889306 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 88 45 128 128 70 42.0 7e-13 MKIMTYTESRAHYAEVLDQVVNDREEIVITRQGHESVVIMALDEYESLMETVYLMQSPAN ARHLRESIAQLRHGNLEEHDLIDIPDEEN >gi|292819727|gb|ACYT02000090.1| GENE 13 12176 - 12439 318 87 aa, chain + ## HITS:1 COG:SP1740 KEGG:ns NR:ns ## COG: SP1740 COG4115 # Protein_GI_number: 15901572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 6 85 5 84 84 94 55.0 6e-20 MLKVLWTPHAWNDCVWWQFEDRKTLTRINALIADIQRNGNEGIGKPEPLRYEYTGFWSRR IDGRNRLVYRISEDTVEIVACRFHYGQ >gi|292819727|gb|ACYT02000090.1| GENE 14 12548 - 14239 2162 563 aa, chain - ## HITS:1 COG:Cgl1871 KEGG:ns NR:ns ## COG: Cgl1871 COG2890 # Protein_GI_number: 19553121 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methylase of polypeptide chain release factors # Organism: Corynebacterium glutamicum # 163 434 104 361 509 166 39.0 1e-40 MTTSVPVPALDRNLIGCLRADVIASTWTVENLQTLISEGALSALMRDSRLPALVELAGAT DPAAVLTRFFILGLPERASALNEALPTLGAHGLESLGLAATIDEAEAASALVMPRAGGAP KREPKEEREESSSPKTTSVPTMRDPDEDAPEPEVEEDPWMRALFDLRPHAATLPGGDHEW WVASDLAEVQTGKPLSDDHVLGIGGATLTLLEMTVREQVDSALDVGCGCGIQALYLATHA DRVVATDLSSRACALTQFNAALNEAVIDVREGSLFEPVEGETFDLIVTNPPFVITPDSVR GASGLLEYRDGGMDRDNLIRAVLRGAPACMNEGGTLQMLANWEIPADRNPDTQWSWRVDS WLDGLPVDAWVVQRDVLDPARYVDMWIRDSGGQLLARADYERAFTSWLADFRRAGTGAIG MGFVALRRLDEAEAASGGKRAYDLSLDGHAPRGRDVAWALASLRAPELWDTALTRASDVR EERHYVPGSPDPELLIMHQGGGLGRSVPVSSSVSAVVGASDGELTVGQIAAALAMLTEAD ADDVRAEIEAPLRDLIRWGFLTY >gi|292819727|gb|ACYT02000090.1| GENE 15 14318 - 15286 1283 322 aa, chain + ## HITS:1 COG:DR1297 KEGG:ns NR:ns ## COG: DR1297 COG2354 # Protein_GI_number: 15806315 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 304 1 299 311 211 48.0 2e-54 MSGGLVALLDDIATLAKVTASSIDDVAAGAVKASSKAVGVVIDDTAVTPQYVSGLSPARE LPIIGKIARGSLINKLFIILPIALLLTWLAPQVLPFLLIVGGAYLCFEGGEKVLEKLGWL PGHHEEHDEGGASSGEEFEKGIVASATRTDLILSAEIMLVSMAGLSNETGVMRVAVLIAV AFFMTFFVYGLVALLVKADDFGLHLAKGALDPEDNRPGPVDNVGRTIVRVMPHVFNTIGV VGTVAMLWVGGHLVIENLAEVGVPVFHHILEVAEHAVSSAGSFVTWLVETLLSGIFGVIL GAVIAWIVVGASALVRRARTKV >gi|292819727|gb|ACYT02000090.1| GENE 16 15449 - 16132 415 227 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 6 198 5 201 201 164 46 4e-40 MTVYTLPELPYDYAALEPHISGRIMELHHSKHHANYVAGANAALEKLAAARESGDFAAIN LWEKNLAFNLGGHTNHSIFWTNMTGEGASRPEGELGAAIDEFFGSFESFQAQFAAAALGL QGSGWAVLAWDTVGKRLVTYQMTDQQGNIPVATVPLLMIDMWEHAFYLDYLNVKADYVKA WWNLVNWENVASRFQAARLSSGLVNAHSALTDLGAHAVDTVKGWWKN >gi|292819727|gb|ACYT02000090.1| GENE 17 17510 - 19510 2889 666 aa, chain + ## HITS:1 COG:MT2465 KEGG:ns NR:ns ## COG: MT2465 COG1297 # Protein_GI_number: 15841909 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 13 653 9 645 667 598 58.0 1e-170 MSAPNATKQTSLKELTLRGIILGGIITLLFTAANVYLGLKVGLTFATSIPAAVISMAVLR FWGDHTVQENNIVQTIASAAGTLSAVIFVLPGLVIVGWWSGFPYWETMFVCAVGGALGVM YSIPLRRALVTGSDLPYPEGVAGAEILKVGDAQDAGEDNKRGLLAITWGALASAAMALLG YMKVVASEVGTAFKFGSTGTMISTSLSLALIGVGHLVGMTVGIAMLIGMVTSYGVLLPLY ANGQLDGADDLTSALSTVFKSDVRFIGAGVMAVAAIWTLIKIMGPIARGMSESLRASRGA KEEGAQIDRTEQDIPGKWVIVSIFVAMIPIAGLLWWFMRGTQIEHNTAVLIAISVLFILL AGLLVAAVCGYMAGLIGSSNSPVSGVGLLVVVITAVVILAVHGRGSTTEENTALIAYTLF TSAIVFCIATIANDNLQDLKTGQLVGATPWKQQVALIIGVVFGALIIPPVLELMQNSFGF QGAPGAGPDALAAPQASLISSLAKGVLGGGIDWKLLGIGAAIGVVVIIIDEVLRPASKGK LALPPLAVGMGIYLPASLTVLIPIGAFIGFLYNRWADKQADVERAKRFGTLAATGLIVGE SLFGVVYAGIAGATGSESPLALPFIGDGFTPVANVLGLVFFAGATWLLYGFARKITRNSD RESAAK >gi|292819727|gb|ACYT02000090.1| GENE 18 19802 - 20057 109 85 aa, chain + ## HITS:1 COG:no KEGG:Elen_1126 NR:ns ## KEGG: Elen_1126 # Name: not_defined # Def: transposase and inactivated derivative # Organism: E.lenta # Pathway: not_defined # 1 85 55 140 167 104 72.0 1e-21 MGVKYARYDYETKVAAARAVVDGGMSKPEAMVRFGIASATPLKQWCRLYREGGAQALKPK PKGRPKGSVRAVPPTREEELQERVR Prediction of potential genes in microbial genomes Time: Tue May 17 07:27:56 2011 Seq name: gi|292819723|gb|ACYT02000091.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.5, whole genome shotgun sequence Length of sequence - 3104 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 369 467 ## COG2801 Transposase and inactivated derivatives + Term 385 - 418 -0.5 2 2 Tu 1 . + CDS 615 - 2243 1120 ## COG3250 Beta-galactosidase/beta-glucuronidase 3 3 Tu 1 . - CDS 2322 - 3104 556 ## Bfae_24900 hypothetical protein Predicted protein(s) >gi|292819723|gb|ACYT02000091.1| GENE 1 1 - 369 467 122 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 1 118 99 215 216 106 48.0 8e-24 NLAQQQEMLQILMDAKPAGAEPILHSDMGWQYQHETYISTLADNGFIQSMSRKGNCIDNG ATEQVFGHLKDEFFRGQDWQTFESFKADLDAYITHWNTTRRQVKLKGLTPAEYRDQALQE AA >gi|292819723|gb|ACYT02000091.1| GENE 2 615 - 2243 1120 542 aa, chain + ## HITS:1 COG:YPO1654 KEGG:ns NR:ns ## COG: YPO1654 COG3250 # Protein_GI_number: 16121921 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Yersinia pestis # 121 424 137 499 1060 129 28.0 1e-29 MKQIPEPDVVWLRDPGASVNRLTVHATWRSRRPLQMLSSTWQVTGATGTASELIRCAPTH QNFSATSVPGVLELDGSWMRGEGQAREEDASHVGDEEPSDLVHASILRREFIFDAPLKEA LERGWMMTLTFGGFSGPLYAWVDRTFVGFCADGFIPAAFDVTGALQPTHSHTLVVLLMDS PVYCHGLFREVSLEARPPAHIVDVVPVTSHDGRAGALTLRVETTGGVEVHAALVNETEQE RLWSAVASPDEVVTARGLDVIPWSAEEPALYRLIVTLRDEEGVKDTVSLDLGFRDVEATS QGVSLAGKALALRGVTRNECDGRTGLAVNIPEMLDDIVWCKRHGVNTVVITDAPGHARFL DLADEYGLYVIDCASNLYGPGVARNEAIEAAIRRDRAHPSVIAWAIGDEEDEVRAAHALD PTRPEYSQARFPDLRKVRGEELHYAPVTVAPSYSGVTVRNHMTFTSTSDLEFLCHVVEEG HVTWEYPAFLDVAPGETGFFPVEWPASGMREVSVRLSYGTGWAPAGFEIGRGFMPAPPQG LR >gi|292819723|gb|ACYT02000091.1| GENE 3 2322 - 3104 556 260 aa, chain - ## HITS:1 COG:no KEGG:Bfae_24900 NR:ns ## KEGG: Bfae_24900 # Name: not_defined # Def: hypothetical protein # Organism: B.faecium # Pathway: not_defined # 46 260 139 336 342 77 26.0 6e-13 ELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVAL GVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAAL PLAVVQALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVALGLWIFLPTNWAVQTQ QTLIRDGRQEYDYDEEDDRDPVIGIAASVYWPCVVVAYFVWGAVFNQWDKSWVLFPVSGL FFGVFAAVRKAIRRAKVGPQ Prediction of potential genes in microbial genomes Time: Tue May 17 07:28:03 2011 Seq name: gi|292819717|gb|ACYT02000092.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.6, whole genome shotgun sequence Length of sequence - 6252 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 285 334 ## Bfae_24900 hypothetical protein 2 1 Op 2 . - CDS 285 - 614 192 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein - Prom 661 - 720 2.0 3 2 Tu 1 . - CDS 731 - 5299 6103 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - Prom 5453 - 5512 3.1 - Term 5479 - 5517 1.4 4 3 Tu 1 . - CDS 5518 - 6252 725 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component Predicted protein(s) >gi|292819717|gb|ACYT02000092.1| GENE 1 3 - 285 334 94 aa, chain - ## HITS:1 COG:no KEGG:Bfae_24900 NR:ns ## KEGG: Bfae_24900 # Name: not_defined # Def: hypothetical protein # Organism: B.faecium # Pathway: not_defined # 1 86 1 86 342 85 52.0 4e-16 MDTIDNFLDAMFAPYPASTRLTDAKAELRAMMEDAYADALASGMTHNEAVGRVITDFGNL QEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGA >gi|292819717|gb|ACYT02000092.1| GENE 2 285 - 614 192 109 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 2 107 3 109 110 78 36 1e-14 MISADAIRGYVDLIVLGLLRERPSYAYELAKTISQVSQGQYAIKQTTLYSALKRLEGQGI TESYQDVSESGKTRTYYRLSPTGQDYLNDKIAEWADTKDLVDRFVEGRE >gi|292819717|gb|ACYT02000092.1| GENE 3 731 - 5299 6103 1522 aa, chain - ## HITS:1 COG:CAC2401_1 KEGG:ns NR:ns ## COG: CAC2401_1 COG1924 # Protein_GI_number: 15895667 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Clostridium acetobutylicum # 14 686 6 663 663 722 51.0 0 MTTQGHHEATRPYQLGIDVGSTTVKAVVLDGNRRLFSDYRRHNADVRASLGALLADVDRA LPGARVHAAITGSGGLTTARAMGIPFVQEVIAGTEATQRLHPEVDVVIELGGEDAKLTYL HPTPEQRMNGTCAGGTGAFIDQMATLLHTDAAGLGELATRHTQLYPIASRCGVFAKSDIQ PLINQGAAHEDLAASIFNAVATQTIAGLACGRPIRGTVMFLGGPLHFLPALREAYKTLLP KADAFVTPDDAQLYVAIGAALLADKEAAKRQRQAEESGATSVDSRGDKLTTLMERLAAAP VQVESPRMDPLFASPEDRDEFVARHSLDVIPKASLDEAQGRCWLGIDAGSTTIKAVVIDS CDRIVFTHYASNEGDPVAAAVDIVRAVRGALPQGCEIGRSCSTGYGEGLVKSALTLDEGE IETMAHYRAAEFICPGVTSVIDIGGQDMKYLRIRDHAVDSISVNEACSSGCGSFLQTFAQ TMGTDVRTFARMAMESESPVDLGTRCTVFMNSSVKQAQKEGADVRDISAGLSYSVVRNAL YKVIKLKEPSDLGERIVVQGGTFLNDSVLRAFELLTGREVVRPDIAGLMGAYGAALTARM HDTGEGTSTLATIEALEGFGVDTTRKTCRLCQNHCQMTISTFSNGERHVSGNRCERGASL ERAPKKSDLPNLYDWKYKRIFGYRRLTEKKAFRGDIGIPRVLGMYENYPFWFTMLTELGF RVMISGRSNHDLFETGMESIPSENVCYPAKLVHGHIESLLDKGITTIFYPCVDFEQKLTE SENSFNCPIVATYPEVIRNNMERIAEPGVRFISPFVNFGNREYLPAHLSKTFKEYGYDIP VEEMKAALDKAWEEDAAVKAEIRAKGVETIEWMREHGVRGIVLAGRPYHLDPEINHGIPE VIVGLGMAVLTEDSIVDGRLERPLRVLDQWSYHSRLYEAAARVGDEPDLEMVQLNSFGCG VDAITADQVQEILEGRGDVHTVLKIDEVSNLGAAKIRLRSLDAAITERASLASAIDEAGA GDGENGADRAELAPASSVGLVSGSVDTATLRDPSGDAAREEEAGHIQPRAVFTEEMREAG YEILAPQMSPIHFRFLTPLFASAGLKVRVLEHTSRTSMEVGLKYVNNDSCYPAIVVIGQL LDEFISGRSDPDRTAVGITQTGGMCRASNYAALLRKGLRDAGYPQVPVIALSVQGFEDNP GFRLSVTHIHKAIQAFVIGDAIQSMLLRVRPYEVEPSSAMDLYRTWDGYVQEWISSGRVA ALGGRVSYGKLIRECVRAFDALPLRDIPRKPRVGLVGEILVKFHPDANNHAVDVIEAEGC EAELPGLMQFFHNSVATAAWDKENLGIEGKQRYIMPIVLWALKKYEKPVHRAFAATNGKF EAHRPIEEMIARSQDIARLGNQAGEGWYLTAEMVDMIEHGCPNIICAQPFACLPNHVVGK GMFRALRTRYPEANIVAVDYDPGASEVNQLNRIKLMLATALQSPDVRDGDVLHLVDAEEP PGGSGVVMLGMPTIPRRRAALR >gi|292819717|gb|ACYT02000092.1| GENE 4 5518 - 6252 725 244 aa, chain - ## HITS:1 COG:MT1907 KEGG:ns NR:ns ## COG: MT1907 COG1118 # Protein_GI_number: 15841327 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Mycobacterium tuberculosis CDC1551 # 2 239 126 361 369 135 41.0 7e-32 AVGIADLAHRRASDLSGGQAARVAIARALAFRPDVLILDEPTAALDVEATAQVSAVLRER LSQSGITTLLVSHDIAEVLALASRMIVMGDGRVVEEGEPARILASPSSVFAARLAGLNIV TGEAIGGPGMVGVRVGEGALWAACDSVAPGEESARVALTFPPEAVALSREEAHASPRSVL PGVVAGIDVDGSLVSVRVALAEGVSVSARVTASAWSELGLGVGDRLWASVKATQVRAIPI APGS Prediction of potential genes in microbial genomes Time: Tue May 17 07:28:14 2011 Seq name: gi|292819691|gb|ACYT02000093.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.7, whole genome shotgun sequence Length of sequence - 25606 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 11, operones - 7 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 23/0.000 - CDS 2 - 1259 971 ## COG4149 ABC-type molybdate transport system, permease component 2 1 Op 2 . - CDS 1269 - 2069 1180 ## COG0725 ABC-type molybdate transport system, periplasmic component - Prom 2113 - 2172 4.3 + Prom 2115 - 2174 2.9 3 2 Tu 1 . + CDS 2412 - 2924 627 ## COG0521 Molybdopterin biosynthesis enzymes - Term 3275 - 3322 18.1 4 3 Op 1 . - CDS 3334 - 4380 1362 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 5 3 Op 2 . - CDS 4411 - 4839 568 ## gi|293194502|ref|ZP_06609999.1| choline binding protein E - Term 4868 - 4898 -0.7 6 4 Op 1 . - CDS 4952 - 6976 2540 ## COG5263 FOG: Glucan-binding domain (YG repeat) 7 4 Op 2 1/0.250 - CDS 7025 - 7642 457 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 8 4 Op 3 1/0.250 - CDS 7648 - 8472 771 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 9 4 Op 4 . - CDS 8474 - 8893 509 ## COG0314 Molybdopterin converting factor, large subunit 10 5 Tu 1 . - CDS 8995 - 9990 1043 ## PPA0506 putative regulator - Prom 10079 - 10138 3.6 - Term 10186 - 10226 12.1 11 6 Op 1 12/0.000 - CDS 10285 - 11061 978 ## COG2181 Nitrate reductase gamma subunit 12 6 Op 2 12/0.000 - CDS 11067 - 11756 825 ## COG2180 Nitrate reductase delta subunit 13 6 Op 3 13/0.000 - CDS 11753 - 13303 2220 ## COG1140 Nitrate reductase beta subunit 14 6 Op 4 10/0.000 - CDS 13303 - 17073 5505 ## COG5013 Nitrate reductase alpha subunit 15 6 Op 5 . - CDS 17142 - 18485 2162 ## COG2223 Nitrate/nitrite transporter - Prom 18541 - 18600 1.7 - Term 18609 - 18659 -0.8 16 7 Tu 1 . - CDS 18709 - 19773 1312 ## COG2896 Molybdenum cofactor biosynthesis enzyme 17 8 Op 1 . + CDS 19951 - 20991 1251 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 18 8 Op 2 . + CDS 20997 - 21515 -184 ## 19 9 Tu 1 . + CDS 21725 - 22741 660 ## Bcav_1339 hypothetical protein 20 10 Op 1 5/0.000 + CDS 23069 - 24346 1329 ## COG0303 Molybdopterin biosynthesis enzyme 21 10 Op 2 . + CDS 24381 - 24863 649 ## COG0315 Molybdenum cofactor biosynthesis enzyme + Term 24875 - 24928 16.1 - Term 24869 - 24910 7.4 22 11 Op 1 . - CDS 24933 - 25445 185 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 23 11 Op 2 . - CDS 25426 - 25605 80 ## gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 Predicted protein(s) >gi|292819691|gb|ACYT02000093.1| GENE 1 2 - 1259 971 419 aa, chain - ## HITS:1 COG:Rv1858 KEGG:ns NR:ns ## COG: Rv1858 COG4149 # Protein_GI_number: 15608995 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Mycobacterium tuberculosis H37Rv # 12 237 7 233 264 162 51.0 9e-40 MTSRRTPAVSPLPIWAGGLGALALCFLLLPLAFMLGRVNWVTLGATLATPEAAAALGLSM RTCVMALGIDLILGVPAALVLSRSWRGVRAARILVALPLSLPPVVAGIALLAAFGRRSTL GALLGGAGLDIAFTTTAVVIAQVFVSLPFLIVTLESALRSREQGLDEMASSLGASPSRVF WQITLPTVLPGLGRGAALALARCLGEFGATLTFAGSMQGVTRTMPLQIYLARESDADLAL ALGVVLLGVAALVVALTETPWGRLAALIRSTRSGRTFASEAAGAPYVDAPADTAAASRES DAGADVRVTGTITERGWNVDAPLRPGLVTAIVGHNGAGKSTLAQVIAGTLRLDEGSARIG ERVVDDAETFVPARRRGVAMVSQAPRIFTHMSVLANVAFPLRVRGVGRAQARATATDQL >gi|292819691|gb|ACYT02000093.1| GENE 2 1269 - 2069 1180 266 aa, chain - ## HITS:1 COG:MT1905 KEGG:ns NR:ns ## COG: MT1905 COG0725 # Protein_GI_number: 15841325 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Mycobacterium tuberculosis CDC1551 # 27 261 23 258 261 150 40.0 2e-36 MRSLRILPVLGAAALALAACTGGSTPAADSTSSAPATQPAAEQTVLNVYAAASLTETFGE LEKTFEAANPGVDVRFNFAGSQDLVTQLGEGADVDVLATANESTMKKAADASQVDAQTIF VTNTLTLITTPGNPAGITGLDSSLEGAKLVICAPEVPCGKLTKTLTEKLGVTLNPVSEEQ AVTDVRGKVSSGQADAGIVYKTDALAEGDAVDTVEIQGAGEAVNKYPIALVSASTKKDLG QKWIDLVLSADGQEVLENAGFTPAAK >gi|292819691|gb|ACYT02000093.1| GENE 3 2412 - 2924 627 170 aa, chain + ## HITS:1 COG:Cgl1165 KEGG:ns NR:ns ## COG: Cgl1165 COG0521 # Protein_GI_number: 19552415 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Corynebacterium glutamicum # 16 166 12 162 162 102 40.0 3e-22 MPKPVDYDLSQISAHVITYSDRIQRGTKEDRATPACTAALAEAGLGPVTVAAIPESADIL ETEIRDALEAGARFILILGGSGFGVGNYAPEVVRSIVEVEIPGIAEQIRAHGLANTPLSG LSREVVGVTARDSSGALIISSPGSRGGALDTLEVVTPLLPAIFHQLDEQR >gi|292819691|gb|ACYT02000093.1| GENE 4 3334 - 4380 1362 348 aa, chain - ## HITS:1 COG:SP0930_1 KEGG:ns NR:ns ## COG: SP0930_1 COG2333 # Protein_GI_number: 15900810 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 1 183 103 277 278 94 33.0 3e-19 MAFYLGTHAHSDHIANADEIIYKYCPKVILSPEYSDAWITDENGLWDNQYVYDHLVNAAN WAVDSYGATFIQRLQGFDTHVTLGDADIQLIPFDNAEYYKTQGTTDANLMGWGVKVTANG HTAFLASDLMSTESDWETPNGFEDRIADEVGEVDMLKAGHHGAESSNSIPFMAKLHPGAI IQTGQADDSPDRLSFLVLHGDTQWFPMGDIWDSIEVPALVCEFSADGITYDGVANSEWGH EYESETPRAWWFKAGRPAATTGWYDGPSGRRYYFNDSASAVADQWLDIDGVSYHFDATGA LIEQKEADGTVTSVSGSSTPSPTRWWAISGGVLLVVLAGGVALLRRRG >gi|292819691|gb|ACYT02000093.1| GENE 5 4411 - 4839 568 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194502|ref|ZP_06609999.1| ## NR: gi|293194502|ref|ZP_06609999.1| choline binding protein E [Actinomyces odontolyticus F0309] # 1 142 1 142 142 173 100.0 3e-42 MTFLRPRLAAALTMTVAAAAASSLTLVGTARADDAQSGAQSDSQSGLSWVPGTTLALANS KSVEASSVSASTLTFASSMSEQTKIFVLSSGSSDAILIKSGDWYGIIDGGEDADLPDGSD PRYPVRSGTAAATNTSTEWLLQ >gi|292819691|gb|ACYT02000093.1| GENE 6 4952 - 6976 2540 674 aa, chain - ## HITS:1 COG:SP0117 KEGG:ns NR:ns ## COG: SP0117 COG5263 # Protein_GI_number: 15900059 # Func_class: R General function prediction only # Function: FOG: Glucan-binding domain (YG repeat) # Organism: Streptococcus pneumoniae TIGR4 # 442 670 520 744 744 218 46.0 3e-56 MTHPTQGVLMNLRHGQLWQRLGLTVLSGILVASLAPATAAAPTDGQNMHGDMESTDLDAL SSDSGVSAPDTAQDRAASDGADASDAAESADSADEATASSEEESVDGIDAQVYTFPGTNG PTRIHVLTTTGSADAILLESRGVFAMIDGAEGVGAPDGKDPRYPLREGVENAALGDTDWV LGYMSNHGVTSSNLAFYLGTHAHSDHIDNADEIIKKFRPKVILSPEYSDAWITDKSRLWD NQWIYDNMMAAARWAQGAYGASIVQNIKDYNTHITLGDMDVQIIPTDPAENYKKTGVRDA NLIAYTAKVSAFGHSAYLAADLETRGGYEDRIAPIVGHVDMLKAGHHGLPSSNSSAFMKA LSPSMIAQTGPEWYIPDNLTESVIHGDSSWVPMMDLWSSGHIPSLIATFAPSGISYNDLS AASWGHEYGLENPRAWWFKGGRPAATTGWWKGSSGSWYYFAGKPSAEASTWVYDGGQWYW MDATGAMATGWIHDGKAWYYLDSAGYLAGTGWSLIGGSWYYLNGGRAALGWLNDGGTWYY LNGATGAMVTGWKQIGGQWYFLNSSGAMVTGWMNDGGTWYYLDATTGAMATGWAQVDGKW YFLRSSGAMLTGWLNGGGSWYYLTGSGAMATGWILDGGAWYYLGDTGAMATGTQEIDGRS STFSLSGRWVGYAS >gi|292819691|gb|ACYT02000093.1| GENE 7 7025 - 7642 457 205 aa, chain - ## HITS:1 COG:Cgl1169 KEGG:ns NR:ns ## COG: Cgl1169 COG0746 # Protein_GI_number: 19552419 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Corynebacterium glutamicum # 11 153 4 136 187 59 34.0 5e-09 MVAPRADAAAIVVGGGGGERLGGVSKADLMLGGERLIDRVCGALLEACGAGCVAVVPPAV RVPDGVLRTLEDPPSGGPLAGIDAGLRALGVGDDVLVVVVSVDAPGVGAFLPALLEPALR EGVEGRIVRGGDPEPFDQYLMGVYRAASLRRAIDEAVAAYGSVRGVGVRRVLRALDVERV SVSADACRDIDTPEDVAWWETFLSN >gi|292819691|gb|ACYT02000093.1| GENE 8 7648 - 8472 771 274 aa, chain - ## HITS:1 COG:ML0817_1 KEGG:ns NR:ns ## COG: ML0817_1 COG0476 # Protein_GI_number: 15827360 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Mycobacterium leprae # 13 260 1 247 259 184 43.0 1e-46 MTIGNPCSRDAAVSGRTVALPLINEPGPYEAGDPALERFRRNWLVSGIGEAGQARLAAAR VLVVGAGGLGSPVLLYLTAAGIGTIGICDSDVVEVSNLQRQLLHGEGDVGDPKPDSAVRH LSGLNSSVRFERYGHVTREWLDEHGREWDLIVECTDSFDSKYLVADYCADSGVPLVWGTV VSMAFQVSVFWSAAPAPVPSLTLRSLHPVKPAPGTTPASPKVGVLGPVVGQAGTAMATEA IKLLVGFGEPLIGRVLMTDAATQRADVLTFAPWG >gi|292819691|gb|ACYT02000093.1| GENE 9 8474 - 8893 509 139 aa, chain - ## HITS:1 COG:Cgl0210 KEGG:ns NR:ns ## COG: Cgl0210 COG0314 # Protein_GI_number: 19551460 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Corynebacterium glutamicum # 9 139 20 152 152 102 40.0 2e-22 MSAEIATGITDEPLDTGALIDSARRDTCGAVASFIGVVRNHDGGESVDAIEYSSHPSSQQ ILRDIVMEFKDRPGVHRIVAWHRVGYLEIGEDAMVVVVAAEHRAQAFRAVEAIVEDVKAK LPIWKKQELTDGSHNWSGL >gi|292819691|gb|ACYT02000093.1| GENE 10 8995 - 9990 1043 331 aa, chain - ## HITS:1 COG:no KEGG:PPA0506 NR:ns ## KEGG: PPA0506 # Name: not_defined # Def: putative regulator # Organism: P.acnes # Pathway: not_defined # 38 217 1 176 206 148 41.0 3e-34 MNDTSRSRPLAETLAAMAALTPAQHALLERISHHATPVTVAELAQEAGLHVSSVRETLEG LFVLGLVEKQQLPSSRRGRPALGYSTTTPADPSFAAQMLHQLTSSLLAWLRVDADDPAAS VREIGSRWADAALETMAVPDHSHNPKRRPVRDTFNVASHLGKVRLFMNAMGFASIPHDTD PMAVVLTACPFTEPGTPDDLALELRRGIVERVFERTATGFATWSLETDPSDPLRLTVSVR RLDEANPKPLSTTLHFFGGAAEAAGGYVRELPSDETPATLGELIDQLSSESPELERILAV SSYLVNERSARLDAELAPGARVDVLPPFAGG >gi|292819691|gb|ACYT02000093.1| GENE 11 10285 - 11061 978 258 aa, chain - ## HITS:1 COG:Cgl1160 KEGG:ns NR:ns ## COG: Cgl1160 COG2181 # Protein_GI_number: 19552410 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Corynebacterium glutamicum # 17 244 1 228 259 249 54.0 5e-66 MESALLHAASAPATQSLSFLDIALWVVLPYVSFAILIVGLAWRYKTDQYGWTSRSSQWNE PTILRWASPLFHFGVLFVFLGHILGLVIPKTWTEAAGVPQHVYHLTATIPGTIAGIMTIV GLALLIYRRLVVKSVRVATTRMDIVTYVMLAIPVLLGGAATLLNQVLGGHEGYDYRETIS VWFRSIFYLHPQAHLMVDVPVSFKLHIVAGLLLFCVWPFTRLVHAVSAPVGYVARPPVIY RSRDERRTHEMTRGGMSD >gi|292819691|gb|ACYT02000093.1| GENE 12 11067 - 11756 825 229 aa, chain - ## HITS:1 COG:Cgl1161 KEGG:ns NR:ns ## COG: Cgl1161 COG2180 # Protein_GI_number: 19552411 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Corynebacterium glutamicum # 15 223 14 223 228 194 52.0 2e-49 MSTFVGIPRIPTAAPETEMDPQDARGVRMAVSVLLDYPGDDFEIKLDAVEEALADLPEPA SASLASFVSYARAAGLRAMQTTYVETFDQRRRCALGLTYYTHGDTRGRGQAILAFKEILR RAGFEMEREELPDHLPVVLEFAAFDETGTAEGLLRSNREGIEVIRTALRATDSPYAPLLD ALVATLPEPDEKTIEGFRKLISQGPPTELVGVGDLSATPFPTSDSTMGR >gi|292819691|gb|ACYT02000093.1| GENE 13 11753 - 13303 2220 516 aa, chain - ## HITS:1 COG:Cgl1162 KEGG:ns NR:ns ## COG: Cgl1162 COG1140 # Protein_GI_number: 19552412 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Corynebacterium glutamicum # 1 476 1 476 531 780 75.0 0 MKVMAQIAMVMNLDKCIGCHTCSVTCKQVWTNREGTEYIWFNNVETRPGVGYPRGWEDQK KWKGGWKRTATGRLVPRQGGRVASLAKIFANPTQPTMKDYYEPWTYEYDKLLQAPANSRA IPTARAKSKITGEHIDKPEWGPNWDDDLGGSMETLDQDPVLHQMNLQVAKTIEDAYMFYL PRICEHCLNPTCVSACPSGAMYKRSEDGIVLVDQDQCRGWRMCVSACPYKKVYFNHNTGK AEKCTLCYPRLEVGQPTICSETCVGRLRYMGVLLYDADRVTWAASQEDERDLYRAQREIL LDPNDPQVVAQAQANGVPHSWITAAQQSPIWKLITEYEVALPLHPEFRTLPMVWYVPPLS PVVDQVTATGSDGEDHRVLLSAISQMRIPMEYLAGLFTAGDTAPVELALRRLAAMRSYMR DVFVDNPTNEEIPASVGMSPEKVKEMYRLLSIAKYDDRFVIPTAHPEMPRGIKELEGCPV SYDVEAFHGLAPATSNRPMGGSSPEGRQMLPLEVVR >gi|292819691|gb|ACYT02000093.1| GENE 14 13303 - 17073 5505 1256 aa, chain - ## HITS:1 COG:Cgl1163 KEGG:ns NR:ns ## COG: Cgl1163 COG5013 # Protein_GI_number: 19552413 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Corynebacterium glutamicum # 25 1256 17 1248 1248 1584 62.0 0 MTNLESDMTFPTYGGEVKPATGATLFALGSWLRRGKASADARQLFLEGGRDGDSFYRDRW SYDKIVRSTHGVNCTGSCSWKIFVKDGVITWETQQTDYPSTGADMPEYEPRGCPRGAAFS WYEYSPTRIKYPYVRGVLLDMFREAKKRLGDPVDAWAAVVEDPEKARAYKSQRGRGGMVR VSWEEAMEIVAAAYVHTIKQYGPDRIAGFSVIPAMSMISYGAGSRFHELIGATMLSFYDW YADLPPASPQVFGDQTDVPEAGDWFNSQYLIMWGTNLPLTRTPDAHFMAEARYHGQKVIV VSPDFADNTKFADDWLRVQPGTDGALAQAMGHVILKEFHVGKREPMFLDYMKRYTDSPFL VEINEVGEGAHEGVAPTTLVPGKFLTAAKMPAGTTERTENNQFRPLVIEADGTVKDPGGT LADRFGEEGAGHWNLNLDGVEPVMSIMDTDEWEAVEIALPRFDLPAAPGQASVGGGYVKR GVPARRVNGRLVTTVFDILLAQYAVEREGLPGEWPTDYMDASTPGTPAWQEEFTSVPAAA AIKIGREFAQNAVETQGRSMILMGAGTNHYYHSDEMYRTFLALTEMCGTQGRNGGGWAHY VGQEKVRPIMGWGSFTFALDWARPPRQMISTGWYYMTTDQWRYDGAAASAMGNPIKSSNL DGKQLVDTLVESVQRGWMPCYPTFSKGSTQLGCEAAEAGMAPAEYVSQELREGRLQFAIE DPDAHHNVPKILANWRTNLLGSSAKGTEFFLRHMLGTGNEVNAEELEEGNRPASVNWREA HPGKLDLMWVADFRNTSTTLHSDVVLPAATWYEKHDLSSTDMHPFMHCFDEAVNPPWEAR TDFEVFQTLARLVGRMAPGHLDTQTDVVAVPLGHDSPDAMTMADGVVPEQTWTPGKTMPK LVAIERDYTQVGYKYDRIGPLVPKAGLASKGVAYNMQEAYEQLGDLNGRAPMDGNAGEGM PLCDTAIKAANMALRFSGTTNGSLAVQGFRTLEKRVGNEMAFLAEGDEEKKITYQDTVLQ PRSVITSPEWSGSEHGGRRYSAFVQNVECRKPWHTLTGRPQFYIDHDWMMDMGESLPIFR PPLDLAHIYGERPVGDHRPGQPGQAEVAVRYLTVHNKWAIHSQYYDNPYMLTLGRGGQTV WMSPQDAEKIGVRDNEWIEAKNRNGTVSARAVVSHRIPEGTVFMHHAQDRQINTPLNEES GKRGGTHNSLTRIFIKPSHLAGGYAQFAYAFNYYGPTGNNRDEVTVIRRRSQEVQF >gi|292819691|gb|ACYT02000093.1| GENE 15 17142 - 18485 2162 447 aa, chain - ## HITS:1 COG:Cgl1164 KEGG:ns NR:ns ## COG: Cgl1164 COG2223 # Protein_GI_number: 19552414 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Corynebacterium glutamicum # 14 447 10 445 445 473 59.0 1e-133 MSATEPAAKKSRYLLTDWNPNDESKWDSKLAWRTLWITTYSLILAFCVWFLPSAIAPKLT ALGFHLDKSQLYWLTALPGLAAGILRLIYMFLPPLIGTRKLVGITSLLCIIPMAGWFYVV QDNTTPYWVLLTLAFMCGIGGGAFSGYMPSTGYFFPKRLAGTALGLQGGIGNLGMSVILL VGPVLMGFGLFGLTWLAPQQQVAGDHVGESIWVYNAAIFFVPWCILAAILAFIWLRDVPV KANLKQQLDIFSNPNTWYMTILYVMTFGLFSGFSAVFALLINNQFGDQSALNLGVKGATY AFLGPLIGSLIRMSWGIFCDRMGGAIWTFISGVGMAITMGGIAWVLTNPTGKMDFYIFLG LMLAMFLFSGFGNAGTFKQMPMIMPARQAGGAIGFTAAIASLGPFLVGVALSAISAPVFF AGCAIFCALCAVLCWIMYARKNAPFPG >gi|292819691|gb|ACYT02000093.1| GENE 16 18709 - 19773 1312 354 aa, chain - ## HITS:1 COG:Cgl1171 KEGG:ns NR:ns ## COG: Cgl1171 COG2896 # Protein_GI_number: 19552421 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Corynebacterium glutamicum # 23 354 2 337 337 384 57.0 1e-106 MSVEFVSASQAAVAVACDAPLRLVDTFGRVARDLRVSLTDRCNLRCSYCMPPEGLDWLPT EETLTDDEVVRLVRVGVERLGIRQVRFTGGEPLLRRGLEGIIEACSHLRTDEGNPLDLAL TTNALGLAKRAQGLKDAGLNRVNISLDSLDPEHFAAITRRDRLGDVLEGIEAAARAGLSP IKVNALVLRGMNEADLPDLVDYCLDRGIELRVIEQMPIGPPDTWDRQNIMTADEILHIMS TRHTLTPAPREDPHSPAGRWIVDGDPTKRLGVIASVSDPFCSACDRTRLTSDGMVRSCLF STEETSLRDLLRGGGDDAQIAARWADAMWAKPAAHGLNIDTFARASRTMSRIGG >gi|292819691|gb|ACYT02000093.1| GENE 17 19951 - 20991 1251 346 aa, chain + ## HITS:1 COG:VNG2617G KEGG:ns NR:ns ## COG: VNG2617G COG1063 # Protein_GI_number: 15791351 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Halobacterium sp. NRC-1 # 1 344 1 345 347 269 45.0 7e-72 MRAVIMHAPGNVTVEDMPMPTILEPTDAIIKLAATCICGSDLWPYRGAQYVHEQRMGHEY VGTVTEVGSAVTTVKPGDFVVGSFCISCGECEICRAGYPSRCATAAAQGDPFVGTRAGGT QAEYARVPLADGTLVKTPATPTSEQIPSLLAASDVLGTGWFAADEAGAAHGKTIVVVGDG AVGLGAIIAAKQLGASRIIAMSRHADRQALARQFGATDIVEERGEEGIARIKEMTGGLGA DGVVEAVGNEASFDQALGCVRPGGHLSFVGVPHGVSLDMGRMFGAEVHMFGGPAAVRKYL PTMIDLIYRSEINPGAVFDLVLPLEQAAEGYAAMDERRATKVMLTV >gi|292819691|gb|ACYT02000093.1| GENE 18 20997 - 21515 -184 172 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHGGFSLAFSLVLSRTVIRAVPPPCGAARMALWRPAPRPRQSAPEPHQTHRACPYLAKSH PRPSNNGPPGHPTGGFGSIRSPITACRRRVARLMLQFPPRDHPKTTRARHNHPTRPVPRQ VTPTDPPSMAHQSPNRGFGTTRSLPTAHRATQPGGLAALEVPSRRVAGVSRA >gi|292819691|gb|ACYT02000093.1| GENE 19 21725 - 22741 660 338 aa, chain + ## HITS:1 COG:no KEGG:Bcav_1339 NR:ns ## KEGG: Bcav_1339 # Name: not_defined # Def: hypothetical protein # Organism: B.cavernae # Pathway: not_defined # 213 334 116 237 262 84 38.0 6e-15 MSQEVGGNDAPFILNAVERAIIRVPRSSHHGLTKIPTAVKIAGRTYLDLSALTDIDMSQL PEIVLAARLYHLALTHQTLVATGQCALWAHGYGCDPTLPPITVSASSAIRPIVLPAIAIG THTFAPVKVKPRHVCHLPAISDIRGLLVENLESAQITAARTSRNRRAAFTQMCMNAHTYT HFDNFHMKASRNNEESWKFFLERELKQLGNRARGRSQAQWIITHADAGCASPGEARVLYE LCAAGLTGMRTQVEVHTRGRRYFIDCAFTAEKVGIEFDGRAKYGDDARSIHSSLSRERER QRHLEAEGWHIIRVGWHDLDHPDELVVQVRGALAARLA >gi|292819691|gb|ACYT02000093.1| GENE 20 23069 - 24346 1329 425 aa, chain + ## HITS:1 COG:Cgl1170 KEGG:ns NR:ns ## COG: Cgl1170 COG0303 # Protein_GI_number: 19552420 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Corynebacterium glutamicum # 39 331 37 322 403 175 40.0 1e-43 MHDPSLSTAQHRELIEALALSHVLPHDTLPIEECLGRRLAVDVFSLIPLPPFTNSAMDGF AVRREDLEGEGPWTLPVVGDIPAGDTRENHLEKGQAWRIMTGAPIPEGADTVVKVEHTDH AAGIAQAPDSVEIRVAPKLGANVRVAGEALKAGSPVLKAGHILDGTALSAAASVGHGTLT VLPRPRVIVVSTGTELKRAGEALERGQIPDSNGILLRGLVEEAGGQVVAHLRTGDTPAEL RRALDEAPEADLVLTAGGISAGAFEVVRLTLGTDAGFHHVAQQPGGPQGVGSTQVGAGGR ETPVICLPGNPVSVFTTFHMYVAGALAVMSGLVAPEHGGTVPSGVIARARVGWDCPSGKT QFIPLRFVDVPGDEAGARWVEPVHPLGSKSHLVASLANAEAIGVVAPDVEVVEPGQELAV VPLVG >gi|292819691|gb|ACYT02000093.1| GENE 21 24381 - 24863 649 160 aa, chain + ## HITS:1 COG:CAC1992 KEGG:ns NR:ns ## COG: CAC1992 COG0315 # Protein_GI_number: 15895262 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Clostridium acetobutylicum # 3 154 5 158 161 134 44.0 1e-31 MKFTHLNEDGAAYMVDVTAKNPTVRQASAVCRVDCSPEVMQALRDGTVPKGDVLAVARVA GISAAKRVPELLPLAHTIGVHGCAVDLSLEDDHVAIRATVRTADRTGVEMEALTSVTVAA LAIVDMVKGVDRSARIREAKIVAKSGGRSGDWVRPEDPQA >gi|292819691|gb|ACYT02000093.1| GENE 22 24933 - 25445 185 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 13 148 4 143 194 75 34 2e-13 MATLVTDVIPARVITVSDRCSAGLAEDLSGPLAARLLADHGVDASVVIVPDDVDAIRAAI TAAVEDGARFVFTTGGTGISPRDVTPEATEPLLVTRIDGLADAIRRRGEEKIASAALSRG LVGVTARSPEGALVVNAPGSRGGVSDTVAVIGPLVAHIVDQLAGGDHPRA >gi|292819691|gb|ACYT02000093.1| GENE 23 25426 - 25605 80 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508436|ref|ZP_02044078.1| ## NR: gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC 17982] # 1 59 377 435 435 80 98.0 4e-14 RATSRQGARPQRPLPQAFEPEPARRVDYELSPRQFNDVDPITSGIRVRRSARRRGNARH Prediction of potential genes in microbial genomes Time: Tue May 17 07:28:46 2011 Seq name: gi|292819676|gb|ACYT02000094.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.8, whole genome shotgun sequence Length of sequence - 9309 bp Number of predicted genes - 13, with homology - 10 Number of transcription units - 8, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1020 889 ## COG0590 Cytosine/adenosine deaminases 2 2 Op 1 . + CDS 1075 - 1224 65 ## 3 2 Op 2 . + CDS 1234 - 1872 872 ## COG0035 Uracil phosphoribosyltransferase + Term 1934 - 1986 20.4 4 3 Tu 1 . + CDS 2114 - 2668 937 ## COG3477 Predicted periplasmic/secreted protein + Term 2689 - 2740 18.7 5 4 Op 1 22/0.000 - CDS 2797 - 3630 1456 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 6 4 Op 2 32/0.000 - CDS 3702 - 4433 1167 ## COG2011 ABC-type metal ion transport system, permease component 7 4 Op 3 . - CDS 4430 - 5452 1235 ## COG1135 ABC-type metal ion transport system, ATPase component 8 5 Op 1 . - CDS 5603 - 5974 319 ## gi|293194564|ref|ZP_06610026.1| CrcB protein 9 5 Op 2 . - CDS 5971 - 6435 256 ## gi|293194565|ref|ZP_06610027.1| CrcB protein 10 6 Tu 1 . + CDS 6516 - 7430 789 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 7453 - 7505 3.0 + Prom 7637 - 7696 2.4 11 7 Op 1 . + CDS 7825 - 8037 77 ## 12 7 Op 2 . + CDS 7997 - 8227 65 ## - TRNA 8134 - 8206 74.5 # Arg ACG 0 0 13 8 Tu 1 . + CDS 8583 - 9146 421 ## COG2606 Uncharacterized conserved protein Predicted protein(s) >gi|292819676|gb|ACYT02000094.1| GENE 1 3 - 1020 889 339 aa, chain - ## HITS:1 COG:PM0078 KEGG:ns NR:ns ## COG: PM0078 COG0590 # Protein_GI_number: 15601943 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Pasteurella multocida # 1 147 5 148 166 154 51.0 2e-37 MNEQYREAMGKALFLANRARETGDVPVGAVIVDENGRIIGRGWNCREANHDPAGHAEIVA LREAGRARGTWRLTGCTLIVTLEPCTMCAGAILASRIDRVVFGAWDPKAGAAGSLRDVLR DARMPHPTEVIGGVLAQEAAMQLRSFFLSCRTPDEMPVVQAPVHEPSDLVAPIVVPYEED EAPDQVHEEASHDEGVPAQLVTPEAPAAPAAPAPSDENPRSEAFPVPPQHGRISHRGTEV SPLPRRAGRPFSERVSGNADNPADIPAGSSLQPAAPVSQPPYRSAAPVLQAVLPSTTRGP ITRTVPQIRPVHVRPAASVPEGLYTPAQPGRPVAQPLRA >gi|292819676|gb|ACYT02000094.1| GENE 2 1075 - 1224 65 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTHGARVTNEFDTRPNTLPIRAADRRSGSDEETPASSSTHWMRGSGRTR >gi|292819676|gb|ACYT02000094.1| GENE 3 1234 - 1872 872 212 aa, chain + ## HITS:1 COG:SPy0392 KEGG:ns NR:ns ## COG: SPy0392 COG0035 # Protein_GI_number: 15674535 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Streptococcus pyogenes M1 GAS # 2 209 3 207 209 206 47.0 4e-53 MRLHVAHHPLITHKLTVLRDRETPSATFRQLVDELVTLLAYEATREVAVTETPIQTPVAP TVGLKLSEPRPIVVPVLRAGLGMLEGMTRMLPTAEVGFLGMRRDDDTLEIETYANRLPDD LSGRQCFVLDPMLATGHTMVAATNYLFERGAKDVTCVCILAAPEGINTLEDAIGDRADVN VVVAAVDDHLNEKSYIVPGLGDAGDRLYGIVD >gi|292819676|gb|ACYT02000094.1| GENE 4 2114 - 2668 937 184 aa, chain + ## HITS:1 COG:SA0175 KEGG:ns NR:ns ## COG: SA0175 COG3477 # Protein_GI_number: 15925885 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Staphylococcus aureus N315 # 10 163 3 155 164 196 59.0 3e-50 MALIQTNPKRRRYGVAALAGVLGGIVSAIVKFGWEVPLPPRTPERNATNPPQELLQQLGL PESVTHLSYTYNGNEGLPWVSFIVHFAFSIGFAVLYCVLAERFPQIKLWQGAAFGIFVYV AFHVILMPLMGTVPAPWNQPFAEHFSEFFGHIIWLWTIEVFRRDMRNRITHEPDAEFPLE SRTN >gi|292819676|gb|ACYT02000094.1| GENE 5 2797 - 3630 1456 277 aa, chain - ## HITS:1 COG:PA5505 KEGG:ns NR:ns ## COG: PA5505 COG1464 # Protein_GI_number: 15600698 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Pseudomonas aeruginosa # 10 277 7 260 260 185 42.0 8e-47 MRHRSLAAIGLAAVATLGLAACGGGSSSSDASGSSSDVVTLTVGATPSPHAKILTYINDN LAADAGIKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHLE PLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELLATQGLVSIPEGDGDVNINTVTKL KNFDFREVEGPQLVRSLDDFDYAVINGNFAQEGGKTISGDALVVESPVDNPAVNVLVWKG DSKEADAIAKLEKLLHSDEVKQYIEKTWSDGSVIPAF >gi|292819676|gb|ACYT02000094.1| GENE 6 3702 - 4433 1167 243 aa, chain - ## HITS:1 COG:BS_yusB KEGG:ns NR:ns ## COG: BS_yusB COG2011 # Protein_GI_number: 16080326 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus subtilis # 23 241 5 222 222 149 52.0 5e-36 MTAALTAAHALALLPAGKGDPTWFDNPALTEKFGPAILETLMMTGLSTLFAVIIGTLLGL LLVQTGKGGLTPNKGVYQAVSFVVNIVRSLPFIIGIIMLIPVTKMIVGKSTGSLATVVPL VILSAPFFARLVETNLLAVDPGKIEAAQMMGASNRQIRWGVLIREAMPALIQSITTLAIT LIGYSAMAGAVGGGGLGQMAINYGYNRWQDDVMISTVVAIIIIVQIIQLIGDLLSRLVDH RAR >gi|292819676|gb|ACYT02000094.1| GENE 7 4430 - 5452 1235 340 aa, chain - ## HITS:1 COG:BH3481 KEGG:ns NR:ns ## COG: BH3481 COG1135 # Protein_GI_number: 15616043 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Bacillus halodurans # 1 258 1 262 338 257 51.0 2e-68 MIDLTGVSKVYPVKNGGTVVALDGVNLHVDRGSIHGIVGRSGAGKSTLIRCLTALEKPTE GHIVVDGLDLATLTGSALRAARRRIGMVFQAANLLDARTAADNIGYPLKLAGVPAAKRRE RVEELLSLVGLEGRGDSYPSQLSGGQRQRVGIARALADNPAVLLCDEPTSALDTESTAQI LSLLRHVRDVAGVTVVIITHEMAVVREICDSVTLLGHGQVLQTGTLEEVVADPSTPLARE LVPMPVVDLVSTESAEGRFEPNAVGTVLLDVVFTSHPGVPTGATVLRLASSMGADVTAGT FESLGSVQVGRLALTVPAYHADKIIEQLRKNNVHAEVRDQ >gi|292819676|gb|ACYT02000094.1| GENE 8 5603 - 5974 319 123 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194564|ref|ZP_06610026.1| ## NR: gi|293194564|ref|ZP_06610026.1| CrcB protein [Actinomyces odontolyticus F0309] # 1 123 1 123 123 171 100.0 2e-41 MSGSTFLFVALAGGVGACARFWVDRGTQRALSSWGEPAGAKLGILVVNVIGCFLAGAATQ LVPAGLMPIVSTGFLGGFTTFSTALVDAVTLWADGFRGRSLALALGTWAASWGAALAGIA CAG >gi|292819676|gb|ACYT02000094.1| GENE 9 5971 - 6435 256 154 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293194565|ref|ZP_06610027.1| ## NR: gi|293194565|ref|ZP_06610027.1| CrcB protein [Actinomyces odontolyticus F0309] # 1 154 1 154 154 232 100.0 6e-60 MVSFRVPDWLAVFVGGVVGTAARAGLDEVSKASPVRGLFLSWSTLTVNAVGAFLLGALAA WVAGRLARGSRNAASLKSLKLLVGTGFAGAFTTYGTYIVASVGYASLNGIVEAVSQSLGL LALGGACAWAGMRVGEWLCVPLGARPVSGEEGRA >gi|292819676|gb|ACYT02000094.1| GENE 10 6516 - 7430 789 304 aa, chain + ## HITS:1 COG:Cgl0237 KEGG:ns NR:ns ## COG: Cgl0237 COG0008 # Protein_GI_number: 19551487 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Corynebacterium glutamicum # 5 298 3 292 293 273 52.0 3e-73 MTNTGRFAPSPTGDFHLGNLRTAILAWAWARTTGRRFVLRIEDIDRERAGSAERQIEDLA AIGVNWDGEPLIQTERADAHEAALASLGARGLVFECYCTRRDIREAASAPHVPPGHYPGT CLTLSEAERSSKRAALAAVGRAPALRLAAPSPEWTVFDELHGSYTGAVDHFVVRRADGVP AYNLAAVVDDAFQGVDQVVRGFDLLSQAPAQAQLAHLLGAPEPTYAHVPLALAPSGARLA KRDGAVTLSDLRGLGWSTEDVVSFIGISLGVPGARCASDIADALGISGLRSLPTEPWVVT PPSS >gi|292819676|gb|ACYT02000094.1| GENE 11 7825 - 8037 77 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MASVAPERDKIRPAQHGCTLERKKLAQRAQKAQNEWFLSSRASFFASVPLKGQRWANFVS AQVGTDSLGP >gi|292819676|gb|ACYT02000094.1| GENE 12 7997 - 8227 65 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRLKWEPTRWDRDSREMGMKKALPKGVLGRNAEPPPMDRTEGGRCAPGGTRTPNLLNRN QMLYPLSYGRLPFGWV >gi|292819676|gb|ACYT02000094.1| GENE 13 8583 - 9146 421 187 aa, chain + ## HITS:1 COG:PA2301 KEGG:ns NR:ns ## COG: PA2301 COG2606 # Protein_GI_number: 15597497 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 21 183 12 175 180 74 33.0 1e-13 MSDISIPRIGSLEPAPALDHLDLLAPPVAAALTALAERGVATASSALVVAIDPELADTEV MTREFGMDLALSSNCILVAGKRAGEERIAACVVRATTNADVNHVVKKRLDVRKASFWPQE RAVEASGMEYGGITPVGIPGSWRLLIDSACAVGWSCIGSGLRRSKLFVTGDVLAALPGAE IVEGLGV Prediction of potential genes in microbial genomes Time: Tue May 17 07:29:26 2011 Seq name: gi|292819643|gb|ACYT02000095.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont3.9, whole genome shotgun sequence Length of sequence - 31296 bp Number of predicted genes - 31, with homology - 29 Number of transcription units - 14, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 49 - 504 -104 ## - TRNA 586 - 673 70.8 # Ser GGA 0 0 - Term 541 - 582 8.5 2 2 Tu 1 . - CDS 764 - 1210 498 ## gi|154508425|ref|ZP_02044067.1| hypothetical protein ACTODO_00922 - Prom 1329 - 1388 3.6 3 3 Tu 1 . + CDS 1370 - 2743 691 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 2762 - 2833 16.0 4 4 Tu 1 . - CDS 3004 - 3708 747 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component - Prom 3914 - 3973 3.6 5 5 Op 1 . + CDS 3976 - 4413 486 ## Caci_0701 transcriptional regulator, MarR family 6 5 Op 2 24/0.000 + CDS 4410 - 5237 340 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 7 5 Op 3 3/0.000 + CDS 5234 - 5872 494 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 8 5 Op 4 13/0.000 + CDS 5869 - 6564 616 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 9 5 Op 5 . + CDS 6561 - 7478 1144 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Prom 7589 - 7648 2.5 10 5 Op 6 . + CDS 7738 - 9333 2690 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 9353 - 9403 23.7 11 6 Op 1 49/0.000 + CDS 9635 - 10561 1481 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 12 6 Op 2 13/0.000 + CDS 10554 - 11522 1392 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 13 6 Op 3 1/0.500 + CDS 11519 - 13432 851 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 14 7 Op 1 45/0.000 + CDS 14236 - 14958 265 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 15 7 Op 2 6/0.000 + CDS 15063 - 15851 1121 ## COG0842 ABC-type multidrug transport system, permease component 16 7 Op 3 19/0.000 + CDS 15861 - 16964 979 ## COG4585 Signal transduction histidine kinase 17 7 Op 4 . + CDS 17039 - 17680 734 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 18 7 Op 5 . + CDS 17721 - 17924 232 ## gi|293194683|ref|ZP_06610051.1| toxin-antitoxin system protein 19 7 Op 6 . + CDS 17929 - 18312 237 ## COG3654 Prophage maintenance system killer protein - Term 18107 - 18144 -0.3 20 8 Tu 1 . - CDS 18299 - 19153 903 ## PFREUD_01550 VanZ 21 9 Tu 1 . - CDS 19329 - 20066 770 ## Arch_1061 domain of unknown function DUF1994 - Term 20089 - 20130 13.4 22 10 Op 1 . - CDS 20185 - 21684 1872 ## COG1113 Gamma-aminobutyrate permease and related permeases 23 10 Op 2 . - CDS 21694 - 22428 985 ## COG2860 Predicted membrane protein 24 11 Tu 1 . + CDS 22509 - 23522 960 ## COG0524 Sugar kinases, ribokinase family 25 12 Tu 1 . - CDS 23725 - 24183 -183 ## gi|293193943|ref|ZP_06609903.1| conserved hypothetical protein 26 13 Op 1 . - CDS 24306 - 25148 942 ## CA2559_12698 hypothetical protein 27 13 Op 2 . - CDS 25145 - 25399 171 ## 28 14 Op 1 . + CDS 25398 - 25694 453 ## gi|154508402|ref|ZP_02044044.1| hypothetical protein ACTODO_00899 29 14 Op 2 . + CDS 25715 - 26842 1235 ## COG1814 Uncharacterized membrane protein 30 14 Op 3 . + CDS 26914 - 27885 810 ## COG1397 ADP-ribosylglycohydrolase 31 14 Op 4 . + CDS 27926 - 31295 2962 ## COG1643 HrpA-like helicases Predicted protein(s) >gi|292819643|gb|ACYT02000095.1| GENE 1 49 - 504 -104 151 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLAAVPVGGGPPARRPRCELRSARRLEARPGPIAAHGRSFFRSPPCLGGALGAIAGVFA LRDGTDSTFAGASLQWNETAITIAGDERPFSGEFQPAKVLAVSMGRAAWRAKVLAVSKLV RHRILCAQKFAPHLPFLPWCPKKFALQAQNG >gi|292819643|gb|ACYT02000095.1| GENE 2 764 - 1210 498 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154508425|ref|ZP_02044067.1| ## NR: gi|154508425|ref|ZP_02044067.1| hypothetical protein ACTODO_00922 [Actinomyces odontolyticus ATCC 17982] # 1 148 1 148 148 242 100.0 5e-63 MSQPSSNIAPAVSSVPWATPDATSSMDAPGDRFGYAPGRLRVPSADLSGPTFPGTQYVDV AAIFADGGYNSPKPIGNPLAKAALWVSVFGIFFLPIVVSVVLAIIALVQAQNLPGRVGAR EAIAALAFDSILIGGAVIFYLIGFSGLF >gi|292819643|gb|ACYT02000095.1| GENE 3 1370 - 2743 691 457 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 29 410 8 414 447 270 36 6e-72 MSETKTPLFRWKLHGNGTSINPGDVVLPSERLSWPRTAGIGAQHVVAMFGATFLVPLLTG FPPSTTLFFTAIGTLLFFLITAGRLPSYLGSSFALIAPIQAVSSSMGPSYALGGIIAVGA TLALVGLIVHFAGVRWIDAVMPPVVTGAIVALIGLNLAPAAWDWVKQGPITAVVTIVSIC VVTVLFKGILGRLSILIGVLIGYLVAIYQGEVDFSKVSNAAWIGFPEFHTPAFSFSTLGL FLPVVFILVAENVGHVKSVSAMTGENMDDLTGRALVADGLSTMLAGSGGGSGTTTYAENI GVMAATRVYSTAAYIIAAGVALVLSMLPKFGALIATIPPGVLGGAGTVLYGMIGMLGVRI WVQNRVDFSNPVNLNTAAVALIVAIANFTWVVGDMTFGGIALGTAAALLIYHGMRLISKL RGTNLEAATPASAPSGSELEGEAYSKRHRSPAPQADA >gi|292819643|gb|ACYT02000095.1| GENE 4 3004 - 3708 747 234 aa, chain - ## HITS:1 COG:DR0830 KEGG:ns NR:ns ## COG: DR0830 COG1226 # Protein_GI_number: 15805856 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Deinococcus radiodurans # 15 222 32 244 280 98 35.0 1e-20 MRKRLYSLLDGDGGAAMWCGRVMTVLIIASLLPLCFKESSPVLETIEYACVLVFIADYLA RWATADLKLGKGALSFLIYPFTPMAVIDLLSILPVFNALNDALRTLRVLRLFRALRTFKL IRYSKSASVIAAVFEKEREALLAVLGLAIGYILVSALAIFNVEPETFNTFFDAVYWAVVS LTTVGYGDLYPTSDVGRAIAMISSLMGVAVVALPSGIITAGMLDELRGGGGEGN >gi|292819643|gb|ACYT02000095.1| GENE 5 3976 - 4413 486 145 aa, chain + ## HITS:1 COG:no KEGG:Caci_0701 NR:ns ## KEGG: Caci_0701 # Name: not_defined # Def: transcriptional regulator, MarR family # Organism: C.acidiphila # Pathway: not_defined # 8 138 7 133 148 63 34.0 3e-09 MATDACTLFATLIDTEVRAWSAVESALSEAGNALTLGRFLVLRTVRDTPACRIQEVAASQ GITLGAASRLVDRLHRDGLLHRTPYEHDRRATILTVTEQGLAHLEEACAVVEKEQERLFA PLSTVQRKELTRCLALIAEAAKERA >gi|292819643|gb|ACYT02000095.1| GENE 6 4410 - 5237 340 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 237 1 239 245 135 34 3e-31 MIRFDHVSKTYPGGTRAVEDFSLTVEQGSTTVFLGTSGCGKTTLMRMVNAMVTPTSGRVF VRDQDVAGEDPVRLRRSIGYVLQEGGLFPHRSIADNIATVPRLEGATKQASRERALELLE LVGLDREMADRYPAQLSGGQRQRVGVARALANRADILLMDEPFGALDPIVRADLQRELKE IQRTLGTTILFVTHDVDEAFTLGDQVAVLSTGGHIEQVGTPTELLCSPASPFVADFVGAS RAARPVRIAGPGGLVVDDAGTPVGTLTTDEAGERP >gi|292819643|gb|ACYT02000095.1| GENE 7 5234 - 5872 494 212 aa, chain + ## HITS:1 COG:MT3864 KEGG:ns NR:ns ## COG: MT3864 COG1174 # Protein_GI_number: 15843377 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 1 206 1 207 229 113 39.0 3e-25 MTWLSSNWGVIGSLTLAHLWIALPAIALSVLMSVPIARWAAFSRRGGWVLSALSALYAVP SLPLLIVIPVIVGVALRSPANMIIVLTLYGVAVLVRQVAEGFRAIPRATLQAANACGYPL FRRFVEVELPLATPVIVAGTRVVATSTVSLVTVGAFIGVRSLGTLFTDGFQRGLIAEVVA GLVATVLLALVVDALIQGIGWALTPWTRRGRA >gi|292819643|gb|ACYT02000095.1| GENE 8 5869 - 6564 616 231 aa, chain + ## HITS:1 COG:MT3863 KEGG:ns NR:ns ## COG: MT3863 COG1174 # Protein_GI_number: 15843376 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Mycobacterium tuberculosis CDC1551 # 1 207 1 208 239 126 51.0 4e-29 MNILLDALTWLTVPAHWLGESGILVRTAQHLGLTLLIVTLAALIALPLGTWIGHTGKGRW LVSATGAARAIPTLGVLTLAGLWLGIGLAAPTLALLVLAIPPLLSATYSGIASTPRATVD AARAIGLTEPQVLAQVEAPHAAGLVAAGVRSATLQVIATTTLAAYTANYGLGRFLYEGLK TRDYAEMIGGAIVVVALALVTDALLALIARRLRARTHSYSDNENNSLKESL >gi|292819643|gb|ACYT02000095.1| GENE 9 6561 - 7478 1144 305 aa, chain + ## HITS:1 COG:MT3866 KEGG:ns NR:ns ## COG: MT3866 COG1732 # Protein_GI_number: 15843379 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Mycobacterium tuberculosis CDC1551 # 6 303 40 337 343 159 37.0 7e-39 MKRTMITMAAVAASALALAACGSAESVGGNTSTGGSENGSTTLIVGSQDYYSNEIIAEAY AQALEGAGFTVDRQLRIGQREVYMPEIEAGAIDVFPEYTGNLLQYLDADATARSTDEVYA ALQTALPSGLRALEQAPATDQDSYVVTADFAAAHSLASIGDLASAGTLTLGGNSELQTRP YGPTGLSQTYGVTVGFTPIEDSGGPLTVKALKDGDIQLANIYSSDPALADGTLKVLDDPK GLFLASHVVPLASSRVSDQAAAVINRVSAAMDAQDLVEMNRASTVDQKSASQIAREWLIS EGLLS >gi|292819643|gb|ACYT02000095.1| GENE 10 7738 - 9333 2690 531 aa, chain + ## HITS:1 COG:Cgl1944 KEGG:ns NR:ns ## COG: Cgl1944 COG4166 # Protein_GI_number: 19553194 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Corynebacterium glutamicum # 36 530 44 533 534 516 54.0 1e-146 MNLKKAWLVIPAAAALALTACAGGGTTSSGSGDKVITANGNEPQNPLLPGLTNENGGGRI LTVLFSQLVRYETDGTAVLDVAESIEPNEDASEWTIKLHNDRKFSDGTPVQAHNFIKAWN LITSKQQQQAAFFSIFEGTDDEGNGEITGLTEVDDYTFTAKLKNPTSDFMSRLGYVAYAP LPDSTLENPEAGGQAPVGNGPYKMASADAWEHNVKFATVPNEHYVGDTKAQNDGVTFVFY TSLDAGYQDLSSDSLDILDGVPASVFKTFESELPGRTVNQPYAGVQYFTIPQYLPHFSGE EGRLRRQAISLAVDRDTITKTIFNGTRTPAKDFTAPTLEGYDANIAGNDVLTYNPNKAKE LWAQADAISPWDGAFTIAYNSDGGHKEWVDATANSIKNTLGIDAEGNPFADFKSLLDAED KGEMTGAFRNGWQGDYPALYNFLQPQFATGADANKGGYSNSEFDSLMIQASSATTTADAV KTLQKAQTILLQDLPAVPLWYPNVSGGWSKNVDNVQFDWKGQPVLYKVTKK >gi|292819643|gb|ACYT02000095.1| GENE 11 9635 - 10561 1481 308 aa, chain + ## HITS:1 COG:Cgl1945 KEGG:ns NR:ns ## COG: Cgl1945 COG0601 # Protein_GI_number: 19553195 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 1 307 1 307 308 396 71.0 1e-110 MLRYIGRRLLQTIPVFFGATFLIFAMVYLMPGDPVAALGGDRGLSEAAAAQIRAQYNLDK PFWMQYLLYLKGVFTLDFGTAFNGQKVTSIMATAFPTTARLAIYALAIETFLGIGLGVVA GMRRGKWFDSTILVVSLLLISVPTFVLGFVLQYVLGVQLAILPTTASASVDIKSLTMPAM VLGGVSLAYVIRLTRQSVSENVSADYVRTARAKGLSGGVVMTRHILRNSLIPVATFIGGD LGALMGGAIITEGIFNIHGVGGTLWNAIIKGEPQTVVSVTTVLVLVYIIANLIVDLLYAV LDPRIRYE >gi|292819643|gb|ACYT02000095.1| GENE 12 10554 - 11522 1392 322 aa, chain + ## HITS:1 COG:Cgl1946 KEGG:ns NR:ns ## COG: Cgl1946 COG1173 # Protein_GI_number: 19553196 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 14 322 35 343 344 439 73.0 1e-123 MSDQIPSANITRTRAGQDHYVSDIDETGLGAVDAVADEGAPSSMWGEAWKRLRRRPTFWI AAFIIALAALLALFPSLFTATDPKFCELSSSLAGPSAGHPFGFDKQGCDIYARVVYGARA SVSVGILTTLAVVLIGGTIGALAGYFGGWFDALLSRITDVFFAIPLLLAAIVFMQMFKGS RSIAMVVIVLSMFGWTSIARITRGSVLSAKNEEFVTAARATGASRARILLSHIIPNSMAP IIVYATVALGTFIVSEASLSFMGIGLPTSVVSWGADISSAQTSLRTNPMVLFYPGAALAL TVLSFIMMGDAVREALDPKARK >gi|292819643|gb|ACYT02000095.1| GENE 13 11519 - 13432 851 637 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 35 629 2 524 563 332 36 2e-90 MSETNTPQLSDKEMEEIVERAVAAGTAPASSDIHPDDAQPLLKITDLEVTFTSSTGVVPA VRGANLTIYPGQTVAIVGESGSGKSTTAAAVIGLLPGTGKVAGGKIEFDGRDITHLTTSE WVELRGSGIGLVPQDPMSNLNPVLRVGKQVKEALIANEVVPRSEVGQRVTALLEEAGLPD AERRAKQFPHEFSGGMRQRALIAIGMAAHPKLLIADEPTSALDVTVQRRILDHLGKLTAE MGTAVLFITHDLGLAAERAEQLVVMHRGRIVESGPALEILQHPQHPYTKRLVSAAPSLAS ARIESAHKRGIAVTDEELVGAGKGATSTDAIIRVENLTKEFDIRGAKKGNDTFLAVDDVS FELRRGTTLAVVGESGSGKSTAANMVLQLLKPTKGKVYFDGEDTSQMSEAELFRLRRRLQ AVFQNPYGSLDPMYSIYRLIEEPLKIHGYGSLEYARAEIKRAEATGREPEEWMRVLVEAA DAKRSLTAAEKGQFNPKKLRIARASELLDMVALPRSAMRRYPNELSGGQRQRVAVARALA LNPEVIVLDEAVSALDVLVQNQILYLLNDLQAQLGLSYLFITHDLAVVRQIADDVIVMEK GKLVEANSTDELFNNPVQDYTRELIEAVPGRNIQLNL >gi|292819643|gb|ACYT02000095.1| GENE 14 14236 - 14958 265 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 222 1 230 309 106 29 2e-22 MNAEATPALQATNIHQSFGHVDALRGVNLTLMPGEIVALLGVNGAGKSTFLDIVLGLATP TQGDISVYGMSPREAVRRSLVSAMLQTGSMPRNGKVRNTIDLVAAMHANPIPTDELLERT NLTKLAKRPLDKLSGGERQRVRLALALAGNPEFLILDEPTAGMDALARRAFWETMRAEAA EGRTLLFATHYLTEARKDADRIVIIDAGKVLLDAPTEQVVADNEDLEDVFERITSHTDAE >gi|292819643|gb|ACYT02000095.1| GENE 15 15063 - 15851 1121 262 aa, chain + ## HITS:1 COG:DRA0008 KEGG:ns NR:ns ## COG: DRA0008 COG0842 # Protein_GI_number: 15807680 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Deinococcus radiodurans # 42 262 39 261 263 65 26.0 8e-11 MTTQAPARATDRPIPSPFTGAGKLWRATFLSHILNPWNMAFALLLPMFMYAMFGMTDVAR TTQTGRGNLAAAMIAMMTTYGVILVGGSLGATLSVERTTGISRMYALTPIQPWVILLVRL TALVALSAFITLITFSFGLATGAQMTPGAWAASAAVVVALSALGALIGLACGYTIKGENA YSASAFVMLMGAFVSGMFIPLDQLPPFVAQIAPFTPLYGAVQAIYAVAGTVTMPTAAWLN IAGWAVITAGIAWWGASHDTGR >gi|292819643|gb|ACYT02000095.1| GENE 16 15861 - 16964 979 367 aa, chain + ## HITS:1 COG:CC1149 KEGG:ns NR:ns ## COG: CC1149 COG4585 # Protein_GI_number: 16125401 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Caulobacter vibrioides # 119 343 156 374 399 81 34.0 3e-15 MKERLISLAWAAPWMLFMGFPLAYALELTDTAQRAGIIGLCALLAAANSAVWLTNPLPAR NSFTRPFILSHAALAAATAIYLVYATAVGFPYAFMLTSYLLVAWIFQAPIRFVPSGVVPI VAIAGVAAYAEGEPLWMIWYLALLIGFVGVARWGMERSARERLRRQDAIQRAKAAERARL STDLHDILGHSLTGITMVSELAGRLLEAGRVEEAREQLRAVTAQSNEALADVRRIVAATR ALSPVEELEEARALLEVARVDADITNEGEPPSGPRSAAAAHVIREGVTNAIMHAHPSWVR IRLSPGGVTVTNDGYSAAYAASSAGSGSGLAGLSELVGDEGTLSWGASGSTWTLALSFGS EPNARSS >gi|292819643|gb|ACYT02000095.1| GENE 17 17039 - 17680 734 213 aa, chain + ## HITS:1 COG:CC1150 KEGG:ns NR:ns ## COG: CC1150 COG2197 # Protein_GI_number: 16125402 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Caulobacter vibrioides # 3 213 2 201 201 160 49.0 2e-39 MTIRVLVADDQAMIRGALAGLLDLERDIKVVAQAADGAQALEELARVASADDPARRGTPV DVAIIDIEMPRMDGITATQAIRSRFPGVRVLIVTTFGRPGYLQRALDAGATGFMVKDAPV EALADGVRTVAAGGRAIDQSLALEALSAGSSPLTDREADVLREVEGGGTIADIAHSLGLS QGTVRNHVSSSMLKMDARTRAEAASLARAAGWL >gi|292819643|gb|ACYT02000095.1| GENE 18 17721 - 17924 232 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|293194683|ref|ZP_06610051.1| ## NR: gi|293194683|ref|ZP_06610051.1| toxin-antitoxin system protein [Actinomyces odontolyticus F0309] # 1 67 1 67 67 99 100.0 5e-20 MAMTLRLDEEHARKLDELAQRSGTSKHDAVLRAIDEEFNRMTHRQRVTDALNQTVERWGD ALERLGQ >gi|292819643|gb|ACYT02000095.1| GENE 19 17929 - 18312 237 127 aa, chain + ## HITS:1 COG:alr9029 KEGG:ns NR:ns ## COG: alr9029 COG3654 # Protein_GI_number: 17227494 # Func_class: R General function prediction only # Function: Prophage maintenance system killer protein # Organism: Nostoc sp. PCC 7120 # 23 126 27 124 128 71 38.0 3e-13 MPCEFLSLEDLLDIMTALRIGPVRDLGLLNAAALRPQTTLMGQDAYPSTAAKAAALLESL TKNHALIDGNKRLAWAACSVFLSLNALEIRETVSNDDVYELVIAVASSDVTFEHVCITLS EWTATHP >gi|292819643|gb|ACYT02000095.1| GENE 20 18299 - 19153 903 284 aa, chain - ## HITS:1 COG:no KEGG:PFREUD_01550 NR:ns ## KEGG: PFREUD_01550 # Name: vanZ # Def: VanZ # Organism: P.freudenreichii # Pathway: not_defined # 116 275 30 167 362 77 34.0 4e-13 MYTAINWALDLGLYVTVCAITCALWWWFGRRGEPSVTAGRAEASTDSVQSAGRVSRARLT VVQALPLIYRRSKQTSALLPREENPDTPTTAEIPAVAVPASSKWRLPRALPLAWILYVAG LLIFTLLPLPSDPVAACAAIIHWDNYTPFGSFVAVADQFRDGESLRGTLYALSILLNIAL FVPLGSLVETTWRIRRMRRAPEGAPADGSRLARSIPHRRVLAWVVIGCAVSCLIELTQYT GLFGVVPCTYRVVDIDDIIMNTLGTYAGVRLLPFMARNSRFMGA >gi|292819643|gb|ACYT02000095.1| GENE 21 19329 - 20066 770 245 aa, chain - ## HITS:1 COG:no KEGG:Arch_1061 NR:ns ## KEGG: Arch_1061 # Name: not_defined # Def: domain of unknown function DUF1994 # Organism: A.haemolyticum # Pathway: not_defined # 6 243 2 243 244 245 52.0 1e-63 MARKRRRSVGDTVLLLVILAALVWAFAPGVGWDLLGLRSRLGWPPLRSGQALSSLPDSEA ARQLRELTVRESVDDPAAPAYDREAFGQRWADTDRNGCDTRNDILARDLARPTFKPGTRD CVVLSGTLAEPYTGATIEFQRGDKTSSLVQIDHVVALADAWRSGAWQWDAQRRQEFANDP ENLLAVDGQANEDKSASSADQWLPPNTAFRCDYVKRQIAVKNAYGLSVTRAEQDALAEQL SICSG >gi|292819643|gb|ACYT02000095.1| GENE 22 20185 - 21684 1872 499 aa, chain - ## HITS:1 COG:BS_gabP KEGG:ns NR:ns ## COG: BS_gabP COG1113 # Protein_GI_number: 16077698 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Bacillus subtilis # 15 489 4 445 469 279 35.0 8e-75 MTPKSTPASSAPAASAASARKPFKTWHLSMMALGLAIGAGFFLGTGSAIHQAGPAVIVSY ALAAIIVVSVMLALAELASSLPSTGSFSSYAEAGIGRWAGFTIGWLYWVMLIMVSGLEVT GAATFFVGWFPAVPQWVVALVIVVVIGGINLLAAGQYGEIEAWLSMVKIVAIIAFLGVGV YLVARTAIVGPLPGHEGVLQNVLGHNGFAPNGLSGIAVALLAVITSFGGLEIVTIAAAEA EDPRAAMSSAIRSVVTRILVFYVGSVILLIALLPWDSEAMNTNAFAAILEMAGVPAVGTL MNVIIFMALISAFSANIYASSRMAYSLSARDMGPRWLLGASASNKARARSVVEAALEDDE ALLATELQGDIEAGRTPKRAVGLVVVLALLAVLGNWYLPGSILTMLINAIGMVLLIVWTF IIISLMRLHPSLERSGSLVIRMPGWPWLPWLVLAGLGGIGVLMLMSDEGRAQLVSMGALT LVIVAIYFVRQLVGSRKRA >gi|292819643|gb|ACYT02000095.1| GENE 23 21694 - 22428 985 244 aa, chain - ## HITS:1 COG:Cgl0134 KEGG:ns NR:ns ## COG: Cgl0134 COG2860 # Protein_GI_number: 19551384 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 16 239 5 227 239 180 44.0 2e-45 MNNDTHRLLRIAMHLLDALNNSLPEVFRAIDLMGVLLNGILGGKVARERNFDAVGFCILA IMTALAGGMIRDLLLTTRTGAPVAITDPYYLGFAIVGALIAMAFRMDSRAWSVLLVIADG MVLGCWSATGAIKTLDAGFAIMPAILMGIMTAIGGGMVRDISAGLVPRVFGGNNLYATPA FACSLVTVIFWHMGQPVLGMGASIIVGLVFTGMAHWRRWKLPQTREWTITLTYSQLKALR GGKR >gi|292819643|gb|ACYT02000095.1| GENE 24 22509 - 23522 960 337 aa, chain + ## HITS:1 COG:alr4681 KEGG:ns NR:ns ## COG: alr4681 COG0524 # Protein_GI_number: 17232173 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Nostoc sp. PCC 7120 # 3 325 5 283 286 126 30.0 6e-29 MTALFAGLTTLDVLHRLDHVPDPSLKVTSTEFTMAAGGPATNAAVTYAALCAASRVVSDP EDEAGAASGAPADSEETPILLTALGEGPVSAFLAADLAAVGVRVVDATAPASSPASREPA VSSIIEHPSGRMVASTNARLDADAERVATDLPERVGAVLIDGHNPALAHAALTLGVPEVD GEDPFAPLEARPPHPRILDGGSWKEWLTPLLGFVDIAVVSEDFAPPLMARPDGAQVAEFL RGFGATRTVRTRGDRTVQYWWDGTSGEIPVEAVPDASTLGAGDAFHGAFVWAIERGGDAD PERLIRFASSVAAVSVSSFGTRQWLTSRALAELVRGW >gi|292819643|gb|ACYT02000095.1| GENE 25 23725 - 24183 -183 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|293193943|ref|ZP_06609903.1| ## NR: gi|293193943|ref|ZP_06609903.1| conserved hypothetical protein [Actinomyces odontolyticus F0309] # 71 135 3 67 130 62 60.0 8e-09 MPSGPSGALHTGGTVSLCVAECVGAKLALARRRPPALRPGSLHIRAIAPLLARPCRRLWA PRPCPADQVVRLSETGVAFARSYVRGVETVIACAGETWVFLVRFSVAVVLLVSMVAVQGR AVVMGVSCWPASVAAEVSLVSKSPRGCVLCAK >gi|292819643|gb|ACYT02000095.1| GENE 26 24306 - 25148 942 280 aa, chain - ## HITS:1 COG:no KEGG:CA2559_12698 NR:ns ## KEGG: CA2559_12698 # Name: not_defined # Def: hypothetical protein # Organism: C.atlanticus # Pathway: not_defined # 3 208 5 207 405 76 29.0 1e-12 MTQITIETPRGVSLSGTFTRPVDCRDAAVIFSHTFLSDRHASGMFDSLGRALRRTGYATL TFDYSGHGASGDEIITFDPLIEDFRSASGWLADQGFARQICVGHEFGAAVALRSRSPAVQ TYVLVSPVLGPLSYDWNLVFSDVQLSDLEHHGATTVPDDSESVRRQFTISKRTLADMSMV SGEDALRGLSVPVLITHDSFDEETGLLDRTREVFHLLPDGSLVEMTAAPDGIAGEYTPVD GVPIIDEAVDRALAASGSAHLPTLADVAAKWASRWVPVSR >gi|292819643|gb|ACYT02000095.1| GENE 27 25145 - 25399 171 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNVLLSLQVVGRPVVAGVSQSPWARLSPARMRAILVALPAAPHDPHHEWGLFTDASRLRC PLVTFVHSVGPSFREWSARAMFIA >gi|292819643|gb|ACYT02000095.1| GENE 28 25398 - 25694 453 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154508402|ref|ZP_02044044.1| ## NR: gi|154508402|ref|ZP_02044044.1| hypothetical protein ACTODO_00899 [Actinomyces odontolyticus ATCC 17982] # 1 98 1 98 98 157 98.0 2e-37 MGTKTGILIGIGIGYVLGTRAGRERYEQIRANASKLRRLPIVARPLDAAGQKMSDLVRAG GEQVTDKVADAVKERLFGAPASEPTTVDAQATSSTTQR >gi|292819643|gb|ACYT02000095.1| GENE 29 25715 - 26842 1235 375 aa, chain + ## HITS:1 COG:Cgl2230 KEGG:ns NR:ns ## COG: Cgl2230 COG1814 # Protein_GI_number: 19553480 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Corynebacterium glutamicum # 9 371 3 354 357 343 54.0 3e-94 MSADPQLNTQEPSRAQIKRWRKHLAEERMEARTYRDLSERRTGEERAVLLQLEEAERRHE EYWLARLGDHALPAPKPPLRTRAASVLAHLFGTIFILAMAQRAEQRSARDVDDDVPAHMQ ADEHIHAEVIRSLAAKSRETLAGTFRAAVFGANDGLVSNLALVLGVAATGVEPHVVLLTG ISGLLAGALSMGAGEWVSVRSQRELLDASIPDPDAHQAVPDLDVDANELALVFRARGESE EEAERHARQVFVRLAKPANGESGAIAVRAALGGSPESDGAGDQVGTPVKAALSSFCFFAA GAFFPLIPYLLGMTSLAAIVVAAVIVGVALLFTGGVVGILSGQSPAPRALRQLIVGYGAA GVTYLLGWLFGTSIA >gi|292819643|gb|ACYT02000095.1| GENE 30 26914 - 27885 810 323 aa, chain + ## HITS:1 COG:alr1337 KEGG:ns NR:ns ## COG: alr1337 COG1397 # Protein_GI_number: 17228832 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Nostoc sp. PCC 7120 # 11 297 10 304 313 119 28.0 6e-27 MSVFLSRARGALMGLAVGDAVGTTNEFKWAGTFDPITDMVGGGPFLLKPGQWTDDTSMAL CIADSLLAQGRYDSFDVMDRYQRWFSEGYRSSTDRCFDIGGQVRAALFDFEHDPRVPVTA ERTTSAGNGAIMRLAPMVIAGFRSRSPREVVATARLSARETHFSVEAEAATEVFAALLVG ALLGWSPEQLMDVSWASTGQPFDEVAARVISPDPRVRASWEAETSGYIVNGLRLAVHGLL DFPSFKDATLAIANMGGDSDTNAAIYGQLGGAFYGIEAIPASWRERVYQGEEIDELACAL VDLQLEAPVTRFDEDLQDEAPSA >gi|292819643|gb|ACYT02000095.1| GENE 31 27926 - 31295 2962 1123 aa, chain + ## HITS:1 COG:hrpA KEGG:ns NR:ns ## COG: hrpA COG1643 # Protein_GI_number: 16129374 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli K12 # 72 1116 45 908 1281 875 47.0 0 MPDSRPTPPSEPNERGPRSRNAGRPANGRDSARRRRGQAGRQGREKRTREGRQPREHARP FKPFTPEQLAERAAAIPVISFPDLPVSSRRDEIARAIRDHQVVIVSGETGSGKTTQLPKI CMQLGRGVAGMIGHTQPRRLAARSVADRIADELGQTVGRERGQVVGYQVRFTDEVGPTTL VKLMTDGILLAEIQSDPMLRRYDTLIIDEAHERSLNIDFILGYVARLLPARPDLKVIITS ATIDSDRFARHFGTWEGTPGSGRLIEPAPVIEVSGRTYPVEIRYRPLGPTTPSSYRSEAS STQADEPEESADEQSSGPMQLVLEDPDDELATLGYGMGEDIDVETAICHAVDELSAEGDG DILVFLPGERDIRDTEAALLDHLKGRGRRAGDDKGARPGDIEILPLYARLTAAEQHRVFE PHRLRRVVLATNVAETSLTVPGIRYVIDPGLARISRYSNKTKVQRLPIEPVSQASANQRA GRCGRVAEGVAIRLFSQADYLSRPRFTEPEILRTSLASVILQMASLGLGAVEDFPFLDAP DRRAVRDGVALLVEISALAQDRESADAAPASSQYRLTGIGRDLARLPIDPRLGRMLLEAE RRGCASEVLVERRGCASEVLVIVAALSIQDVRERPAEHQGTADASHARLADPHSDFITYL NLWRYLAVQARDLSGSAFRRMCRAEFFHYLRWREWRDVVGQLRQMARALGIAAGPMGEPS TGDVVEAAQFGGAQDAAVRAVLAYGQGTASVDADQVHRSLLVGLLSYLGSWDETKRDYEG ARGTHFTIWPGSGMSGHPAWVMTAELVETSRLFARTVARIRPEWVEPAARVLLKRSYSEP FWSVAKGAAMVRERVTLYGLTLAADREVLLGRLGDLVIDEAVAASRSHAPRAGSLEALAA GLVSASKDSLSSGSFEPRHFEELAAAREGTTARELAREMFIRNALVDSQWRERHAFQRRN EALVEQAREVERRSRTHGLVADEQARFRFFDDLIPEHVTSAAAFNHWWKDKRREHPDLLI YPASLLMPREATSGEGFPDRWQCGDLSLALSYEFAPGSPRDGVSMRIPIEVLERVSDAGT DWLVPGMREDLLTEAIRALPKGVRRLLAPAPDVAASVARWIEQ Prediction of potential genes in microbial genomes Time: Tue May 17 07:30:20 2011 Seq name: gi|292819639|gb|ACYT02000096.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont4.1, whole genome shotgun sequence Length of sequence - 893 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 21/0.000 - CDS 37 - 309 104 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 21/0.000 - CDS 306 - 602 167 ## COG0477 Permeases of the major facilitator superfamily 3 1 Op 3 . - CDS 643 - 891 79 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|292819639|gb|ACYT02000096.1| GENE 1 37 - 309 104 90 aa, chain - ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 65 307 369 394 66 52.0 1e-11 MILLASGGIGMPALQAMLSRQVDDDHQGQLQGSLAALTSLTSIIGPLIVTAIYAASASTW NGLAWIVGAALYLVCLPALRRGAWSRATST >gi|292819639|gb|ACYT02000096.1| GENE 2 306 - 602 167 98 aa, chain - ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 77 213 283 394 64 43.0 5e-11 MTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTG PATKRFGEKQAIIAGMAPTRWATSCWRSRREAGWPSPL >gi|292819639|gb|ACYT02000096.1| GENE 3 643 - 891 79 82 aa, chain - ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 75 112 185 394 72 52.0 1e-13 GAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPFLAAAVLNGL NLLLGCFLMQESHKGERRPMPL Prediction of potential genes in microbial genomes Time: Tue May 17 07:30:21 2011 Seq name: gi|292819637|gb|ACYT02000097.1| Actinomyces odontolyticus F0309 A_odontolyticus-1.0.1_Cont5.1, whole genome shotgun sequence Length of sequence - 575 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 223 148 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 . - CDS 296 - 508 135 ## G2583_0957 hypothetical protein Predicted protein(s) >gi|292819637|gb|ACYT02000097.1| GENE 1 1 - 223 148 74 aa, chain - ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 74 2 72 394 80 57.0 6e-16 MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCA PVLGALSDRFGRRP >gi|292819637|gb|ACYT02000097.1| GENE 2 296 - 508 135 70 aa, chain - ## HITS:1 COG:no KEGG:G2583_0957 NR:ns ## KEGG: G2583_0957 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 68 96 163 299 135 100.0 6e-31 MNIIKQQGGMFGPNKNISEWCIPQNEGKSPKTRDKTSLKLGDCYPSKQGDTKDTITKEKR KDYSSENSHV