Prediction of potential genes in microbial genomes Time: Fri May 13 12:30:24 2011 Seq name: gi|316916932|gb|ADCN01000001.1| Bifidobacterium sp. 12_1_47BFAA cont1.1, whole genome shotgun sequence Length of sequence - 57959 bp Number of predicted genes - 53, with homology - 51 Number of transcription units - 34, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 303 100.0 # AE014295 [D:159243..160772] # 16S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. - Term 851 - 877 0.3 1 1 Op 1 . - CDS 923 - 1423 601 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 2 1 Op 2 . - CDS 1520 - 3397 2558 ## COG4716 Myosin-crossreactive antigen - Prom 3535 - 3594 1.9 - Term 3440 - 3481 -0.3 3 2 Tu 1 . - CDS 3603 - 4013 313 ## BL0128 hypothetical protein 4 3 Tu 1 . - CDS 4126 - 7683 4392 ## COG0587 DNA polymerase III, alpha subunit 5 4 Tu 1 . + CDS 7791 - 8111 248 ## BLD_0144 hypothetical protein - Term 8004 - 8046 -0.6 6 5 Tu 1 . - CDS 8192 - 9058 779 ## COG1295 Predicted membrane protein - Prom 9174 - 9233 1.6 7 6 Tu 1 . - CDS 9263 - 9742 558 ## COG1373 Predicted ATPase (AAA+ superfamily) - Term 10015 - 10045 -0.5 8 7 Op 1 15/0.000 - CDS 10052 - 11014 734 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 9 7 Op 2 . - CDS 11014 - 11562 649 ## COG0597 Lipoprotein signal peptidase 10 7 Op 3 . - CDS 11584 - 12963 1835 ## BL0121 hypothetical protein - Prom 13013 - 13072 1.6 11 8 Tu 1 . - CDS 13103 - 13405 302 ## Blon_0802 narrowly conserved hypothetical protein - Term 13446 - 13487 11.0 12 9 Op 1 . - CDS 13527 - 14006 524 ## COG1799 Uncharacterized protein conserved in bacteria 13 9 Op 2 . - CDS 14019 - 15230 996 ## COG0206 Cell division GTPase - Term 15287 - 15318 2.4 14 10 Tu 1 . - CDS 15342 - 16586 482 ## PROTEIN SUPPORTED gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase - Term 16595 - 16633 9.1 15 11 Tu 1 . - CDS 16731 - 18203 2128 ## COG0423 Glycyl-tRNA synthetase (class II) - Prom 18360 - 18419 2.4 16 12 Op 1 . + CDS 18639 - 19583 1136 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family + Term 19584 - 19627 0.0 17 12 Op 2 . + CDS 19666 - 22419 4226 ## COG0422 Thiamine biosynthesis protein ThiC + Term 22427 - 22463 9.6 - Term 22410 - 22455 4.7 18 13 Tu 1 . - CDS 22456 - 22722 257 ## BLJ_1352 vesicle-fusing ATPase - Prom 22907 - 22966 2.9 19 14 Op 1 . + CDS 22926 - 23735 1131 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 20 14 Op 2 . + CDS 23786 - 24163 728 ## COG0011 Uncharacterized conserved protein + Term 24164 - 24210 2.8 + Prom 24431 - 24490 3.0 21 15 Tu 1 . + CDS 24669 - 26048 1724 ## COG0477 Permeases of the major facilitator superfamily + Term 26090 - 26135 10.1 22 16 Op 1 . - CDS 26132 - 26404 102 ## BLJ_1356 hypothetical protein 23 16 Op 2 . - CDS 26414 - 26530 171 ## BLJ_1357 LuxR family two component transcriptional regulator + Prom 26554 - 26613 2.1 24 17 Op 1 . + CDS 26677 - 27087 256 ## BLD_0127 hypothetical protein 25 17 Op 2 . + CDS 27145 - 28542 1492 ## COG4826 Serine protease inhibitor 26 17 Op 3 4/0.000 + CDS 28586 - 29626 1022 ## COG1609 Transcriptional regulators + Term 29650 - 29685 6.1 + Prom 29694 - 29753 5.4 27 18 Op 1 . + CDS 29840 - 31177 1933 ## COG0477 Permeases of the major facilitator superfamily 28 18 Op 2 . + CDS 31188 - 32744 2249 ## COG1621 Beta-fructosidases (levanase/invertase) + Term 32753 - 32784 4.1 + Prom 32758 - 32817 2.8 29 19 Op 1 21/0.000 + CDS 32940 - 33722 945 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component + Prom 33760 - 33819 3.0 30 19 Op 2 . + CDS 33982 - 35052 1817 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components + Term 35087 - 35128 7.0 31 20 Tu 1 . + CDS 35176 - 36363 238 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 36459 - 36493 1.4 - Term 36601 - 36627 0.3 32 21 Op 1 4/0.000 - CDS 36632 - 37420 869 ## COG0020 Undecaprenyl pyrophosphate synthase 33 21 Op 2 . - CDS 37423 - 38142 618 ## COG1381 Recombinational DNA repair protein (RecF pathway) 34 21 Op 3 . - CDS 38192 - 39970 1782 ## BL0099 hypothetical protein 35 21 Op 4 . - CDS 40025 - 41245 1459 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 36 21 Op 5 . - CDS 41245 - 42435 1152 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 37 21 Op 6 . - CDS 42432 - 44135 1348 ## BLD_0114 hypothetical protein 38 22 Tu 1 . + CDS 43986 - 44348 157 ## gi|227546831|ref|ZP_03976880.1| hypothetical protein HMPREF0175_1255 - TRNA 44367 - 44440 88.9 # Val TAC 0 0 39 23 Tu 1 . - CDS 44604 - 45020 560 ## BLD_0113 hypothetical protein - Term 45062 - 45100 -0.9 40 24 Tu 1 . - CDS 45136 - 46017 990 ## COG3480 Predicted secreted protein containing a PDZ domain - Prom 46093 - 46152 1.9 41 25 Op 1 . + CDS 45994 - 46152 61 ## 42 25 Op 2 . + CDS 46238 - 47983 2022 ## COG5282 Uncharacterized conserved protein 43 26 Tu 1 . - CDS 48056 - 49630 1146 ## COG0210 Superfamily I DNA and RNA helicases - Prom 49782 - 49841 2.0 + Prom 49535 - 49594 1.6 44 27 Op 1 . + CDS 49776 - 51431 1313 ## BLD_0109 putative aminoglycoside phosphotransferase 45 27 Op 2 . + CDS 51580 - 51804 404 ## BLD_0108 hypothetical protein + Term 51817 - 51866 10.6 - Term 51639 - 51685 -0.3 46 28 Op 1 . - CDS 51865 - 52758 620 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 47 28 Op 2 . - CDS 52766 - 53014 136 ## 48 29 Tu 1 . + CDS 52896 - 53633 710 ## COG4243 Predicted membrane protein + Term 53665 - 53696 -1.0 49 30 Tu 1 . - CDS 53639 - 54532 1047 ## COG0253 Diaminopimelate epimerase 50 31 Tu 1 . + CDS 54640 - 55434 772 ## COG0796 Glutamate racemase 51 32 Tu 1 . + CDS 55563 - 56408 1133 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily + Term 56615 - 56655 2.0 52 33 Tu 1 . - CDS 56475 - 57392 1416 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Prom 57472 - 57531 2.1 53 34 Tu 1 . + CDS 57566 - 57959 316 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316916932|gb|ADCN01000001.1| GENE 1 923 - 1423 601 166 aa, chain - ## HITS:1 COG:CAP0111 KEGG:ns NR:ns ## COG: CAP0111 COG0454 # Protein_GI_number: 15004814 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 9 166 5 162 162 167 47.0 6e-42 MTDSDPQLIRHATIDDLDALAAMESECFPAAEAADRSSLRARIETYPECFWLLIDGEIVM AFINGFATDRRDLTDDMYEDAAQHNPQGDWQMIFGVDTAPKYQHRGCASTLMRKVIEDTR AAGRKGLVLTCKDRLVGFYAQFGYEDEGISESTHGDVVWHQMRLTF >gi|316916932|gb|ADCN01000001.1| GENE 2 1520 - 3397 2558 625 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 625 1 591 591 717 53.0 0 MYYSSGNYEAFARPKKPADVDNKHAYIIGTGLAALSAACYLVRDGQMPGENIHILEKDPV PGGACDGLDIPGLGYVMRGGREMDNHFEVMWDLFRSIPSIETEGVSVLDEYYWLNKEDPN YSLCRATKNLGKDAGLKGKFGLSDKASMEIMKLFFTPDEDLYDKPITDFFDDEVLNSNFW LYWRTMFAFENWHSALEMKLYIKRYIHHIGGLPDFSALRFTRYNQYESMILPMVKYLESH GVEFRYNTKVENVEFAIGGGAGPKREHTGVGQDTIQKIQATSGFFKRNPASTPTKKLAVR IDVDHEGDKSSIDLTENDLVFITNGGCVENSTMGSQNSPAAWNPDLKPGGGWDMWKRIAD QDPSFGHPEKFCSDPNATKWMSATVTTLDGEIPPYIQKICKRDPFSGKVVTGGIVTVQDS NWLMSWTLNRQQQFRDQPKDQLCVGVYGLFPDKPGNYVKKPMTECTGEEICEEWLYHMGV PTDKIEALAKHHANTVPVMMPYITAFFMPRAAGDRPDVVPDGAVNFAFLGQFAETPRDTI FTTEYSMRTGMEAVYTLLGVDRGVPEVWGSVYDVRNLLNATVKLRDGAPVTDMKLNFIEK AVVKKVLKKLDGTDIATLLREYRVI >gi|316916932|gb|ADCN01000001.1| GENE 3 3603 - 4013 313 136 aa, chain - ## HITS:1 COG:no KEGG:BL0128 NR:ns ## KEGG: BL0128 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 136 9 144 144 262 100.0 3e-69 MGMEMADTGNNDDEQQWIATMLERLSHSQFRAKFALTDKDRAYARTKGKATIDRHAREML RDRIGAAEPKNDGRQTPWRGHPVFTAQHATATCCRGCIEKWHHLPKGRELAEAEVNRLAD LVMAWIERDLINHPVR >gi|316916932|gb|ADCN01000001.1| GENE 4 4126 - 7683 4392 1185 aa, chain - ## HITS:1 COG:MT1598 KEGG:ns NR:ns ## COG: MT1598 COG0587 # Protein_GI_number: 15841014 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 5 1182 7 1182 1184 1189 50.0 0 MADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCV ANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNL IKASSVANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGE FQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAM LCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHED GAFMPKFPCPEGWDETSLFLKKVEEGLEKRYDGNPPLDVLKQADYECGVICQMQFCGYFL VVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDI DVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKA LPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTGVH ACATIMGSAPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI EANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKTMGE GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAELAVDAIVQI RGQVELRDETVSLRATEMQIPTLEAEDERPLVITLPPVALERQRMMQLGQVLANHPGYCE VHLAVLDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPAA >gi|316916932|gb|ADCN01000001.1| GENE 5 7791 - 8111 248 106 aa, chain + ## HITS:1 COG:no KEGG:BLD_0144 NR:ns ## KEGG: BLD_0144 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 106 1 106 106 180 100.0 1e-44 MKFEDYSPEIQAKLMEIGNAAADAVESQESPAEGIPEDSPNFSPELELSRLINRRKAELE YIDARIAQMVLLMHERGQSWETIGRKLGITGEATRLRYAKMERPRQ >gi|316916932|gb|ADCN01000001.1| GENE 6 8192 - 9058 779 288 aa, chain - ## HITS:1 COG:YPO3985 KEGG:ns NR:ns ## COG: YPO3985 COG1295 # Protein_GI_number: 16124112 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 22 282 53 318 360 72 21.0 1e-12 MHGLKSAIDRGADAWARSLPGRVLDRYVSRSGPLLANGLAYGLLFAFFAGVWIAVSVFGL IMVGNIDWQQMLIDAVREVIPGVADSFLTSSALGAMSSALTWTGLATLAIFWWTVTGWMN SLRHAVRTMFDDCGDELNIVVARLRDTLAAIAIAILFILSTAAGTVSGGIVRRLLQWGGI PSSSLPGTVLLEMTGFGTGVALNFALFMLLLRVVSHIKAGRFTILGALLGSLTVSAMQLL GARLLAGASRNPMLAPFAALIGVLIWFNLVAQVILLCAALIAECRQKS >gi|316916932|gb|ADCN01000001.1| GENE 7 9263 - 9742 558 159 aa, chain - ## HITS:1 COG:SP0298 KEGG:ns NR:ns ## COG: SP0298 COG1373 # Protein_GI_number: 15900232 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Streptococcus pneumoniae TIGR4 # 13 154 259 402 402 114 42.0 8e-26 MTVPVPTTIAAYDAFILYPAHRYDIKGKRILKQEKKYYAVDLGMRRILCSNNVRDTGRLL ENVVFLELMRREGDVYVGQSSGGEIDFVTNGPGGRRYYQVSESVHDSATLDRELSSLRAV RDNYPKTLITLDDERPYSHEGIRQVYALDWLLNEDHKKQ >gi|316916932|gb|ADCN01000001.1| GENE 8 10052 - 11014 734 320 aa, chain - ## HITS:1 COG:Cgl2087 KEGG:ns NR:ns ## COG: Cgl2087 COG0564 # Protein_GI_number: 19553337 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Corynebacterium glutamicum # 2 304 6 310 310 296 52.0 3e-80 MSRIVPAPDALVGKRFDVAVAKMLGISRSKAADLVDSGQARVLGREVARSSTLQAGETVE FDLAEEQAEPEPIATDMAVVYEDDDVVVVDKPVGVAAHASVGWTGPTVLGSLRDRGVHIT SYGAAGREGIVSRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKA TIEAPIGRAKVSDFRFCVTPAGKPAVTHWDVLERFGHEATLVSVNLETGRTHQIRVHFSS IGHPLCGDPMYGANPVLSEALGLDRQWLHAMKLEFRHPRTRVWTTVRSQYPADLAAALDA MRARHIEPAEPAEYAEVLVD >gi|316916932|gb|ADCN01000001.1| GENE 9 11014 - 11562 649 182 aa, chain - ## HITS:1 COG:MT1591 KEGG:ns NR:ns ## COG: MT1591 COG0597 # Protein_GI_number: 15841006 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Mycobacterium tuberculosis CDC1551 # 11 160 32 182 202 100 41.0 1e-21 MTNQQGRLRTRVAVFACVAAAALIVDQLTKAWAMAALSNGQTIRVIPGLLSFTLVRNPGA SLGMGSGATWVISLLAVVACVALAVAGVRTVSMKWSVAISFAFAGALGNLIDRVMYADGF LDGKVVDFLNYGWSVGNVADIYLVVAGVVLVILILMGEPFSHKDLIEQSDESLQSEPEAD AK >gi|316916932|gb|ADCN01000001.1| GENE 10 11584 - 12963 1835 459 aa, chain - ## HITS:1 COG:no KEGG:BL0121 NR:ns ## KEGG: BL0121 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 459 1 459 459 509 99.0 1e-142 MALLTPKDIREHTFQTVRFKEGYDVDEVDDFLDQVTETVEALGRQAVAGGQATQTLGPDV TNLNAKISDLTGQVQQLESENAGLKNAVAQAQQAAQAGNDQAAQLVSAKLSEAEESNRAL SSQNEQLKGQVDQLNAQIDQLTAQAAQASGDQEAVGQQIAAIQQERDQFRAANEELSRQL AAAQQQGSAAQQQSAQIAELSRQLEEAKQRENQLRAQVSKVEPSTETGSLQKIAGAASMP GTEPERATAMLTLAMQLHDQYVEKGKNKAKEITEASQNKYNDLVTKANNYSERTRSEADD YSTRTRSDADTYSDRTRSEADAYRDQTHADAETYSQNTRSEADAYSVKTRQDADNYSKSQ HDDADNYEKEVQQRAAEYDKNTRSAADAYDKNTRSAADTYAEQVRDNLQAQSKVVEGNIQ SLKQFETEYRARLTEYLGQLASQVSESNNYVDQTSSKTN >gi|316916932|gb|ADCN01000001.1| GENE 11 13103 - 13405 302 100 aa, chain - ## HITS:1 COG:no KEGG:Blon_0802 NR:ns ## KEGG: Blon_0802 # Name: not_defined # Def: narrowly conserved hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 100 1 100 100 130 100.0 1e-29 MLSLVFSLIGRILAWLINAYITVLFVRMILDWVSVLARNWYPRGVVAQLINIVYSITEPP LRWLRRYIRPLPLGSIYLDVSFIVLYFALVVLESVVLIVF >gi|316916932|gb|ADCN01000001.1| GENE 12 13527 - 14006 524 159 aa, chain - ## HITS:1 COG:ML0920 KEGG:ns NR:ns ## COG: ML0920 COG1799 # Protein_GI_number: 15827440 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium leprae # 65 151 116 202 210 82 44.0 2e-16 MAGFMKNAMSYLGMSDVVDDEDDYIEEDEEQKPASKSAFDSDHTVTPLASTTAPAASSTT KPFPGGRVNRITTIHPKSYEDAQLVGRALRDGVPVVLNLTGVAEAVAYRIVDFSAGVVFG VRGSLERVTPRVFLLSPAQVNIKVEEPTKPASAHDLFAD >gi|316916932|gb|ADCN01000001.1| GENE 13 14019 - 15230 996 403 aa, chain - ## HITS:1 COG:MT2209 KEGG:ns NR:ns ## COG: MT2209 COG0206 # Protein_GI_number: 15841642 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 26 317 44 335 401 315 64.0 1e-85 MSEIAQNEFNDKTNIKVVGVGGAGGNAVNRMIAEGLQNVEFVAVNTDAKDLLRSDADVKI SLSDKSSRGLGAGADPERGAKAAQDHQSDIEEALRGADMVFVTCGEGGGTGTGASPIVAR AAHQQGALTIAVVTRPFSFEGPQRSASAEYGIDNLRKEVDALIVIPNDRLLELSDRSIGI IEAFKTADTALLAGVQGITDLISMNSYIHVDFNDVNSILRGAGTALFGIGSARGEDRATQ AAEIAISSPLLEESIEGAHGALINIAGPTDLKLQEASAATELVRKAIHPEAQIIWGLALD DAYGDEVRVTVIAAGFDPVAAQDDDTQSTVTPVVPTAADPATPVAQPAPAPAPAAQPAAT AQPAFTPATGDSASLPFDDPTSAHPNIAVNDPAGDLDIPDFLR >gi|316916932|gb|ADCN01000001.1| GENE 14 15342 - 16586 482 414 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae 3655] # 38 344 28 327 353 190 37 2e-47 MAQSESETVLTEHHETDNLDPRTDAPARPGTPVHIAPVQLGNITVPTPVVLSPMAGVTNW PFRVICEEYGPDGLYVAEMITARALVAHNPKALRLCHFAKSEKIRSLQLYGVNPSITEQA AKIVVDGNMADHVDLNFGCPVPKVTRRGGGSALPWKTDIFTELLQRVVAVCEPAGIPVTA KIRVGIDHNHETFLEAGHIAQEEGCKAVTLHARTTAEYYGGHSDWSRIGELKEHLNIPVF GNGDIWGAEDALEMVRETGCDGVAIGRGCQGRPWLFANIKNAFEGNPERLNPNLGEVCRV IHRHAELLTEFYEGDEMMAVHDLRKHIAWYLKGFPVGGSTRKAFMECESLADVDREIGKL DPTIEYPPRVVDKPRGRVRFAKKVHLPYGWLESRTTTHEEREALFGDDPMDASY >gi|316916932|gb|ADCN01000001.1| GENE 15 16731 - 18203 2128 490 aa, chain - ## HITS:1 COG:Cgl2226 KEGG:ns NR:ns ## COG: Cgl2226 COG0423 # Protein_GI_number: 19553476 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Corynebacterium glutamicum # 3 459 4 458 461 694 72.0 0 MAQSKLDEVVSLAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKREWWRSMVVTRPD VVGVDTSIILPPEVWVASGHVSVFNDPLVECLNCHKRNRADKLEESYAEKHGDKMPENGM KDIVCPNCGTRGQWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFKNVMTSSR SRPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVTPGTDEEWHQYWIDARTRWYI DLGVKPENLRHYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTDYDLSAHSKH SGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLD PRLAPVKAAVLPLSKKPELQTVAQNLADDLRFNEWMIDYDESGAIGRRYRRQDEIGTPLC ITVDFDTLEDHAVTIRERDTMAQERVALDKVADYVAARIGEKRTRVPLKPVEMGGEPWPE SGVQEAGGLY >gi|316916932|gb|ADCN01000001.1| GENE 16 18639 - 19583 1136 314 aa, chain + ## HITS:1 COG:PAB2432 KEGG:ns NR:ns ## COG: PAB2432 COG2145 # Protein_GI_number: 14521296 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Pyrococcus abyssi # 31 308 7 259 268 125 30.0 8e-29 MSNSASSFTGVSSGYTAGTPVPADSPIRDNIADAVRRVRETTPLAQSFTNFVTINLVANA QLAAGGTAAMSFLPDDVIETAKIAGANYINVGTLLPFYKDALPEIAQRLNYLDKPWVLDP VAAGIGRTRTAILQAFKAAPPTMIRANASEVIALANMWGLNTETVGDASEHRPAGVESVD DVESATGAAVALAQYLTEQHAKHSSHDASTRCAVAVSGIADLVTDGETVYRLPGGSAMMT KITGAGCSLGGVAATYLAVSDPLTAALSASLLYNRAGEVADTTSHGPGSFQVAFLDALWN VTAEQVAKSEILVQ >gi|316916932|gb|ADCN01000001.1| GENE 17 19666 - 22419 4226 917 aa, chain + ## HITS:1 COG:Cgl1275 KEGG:ns NR:ns ## COG: Cgl1275 COG0422 # Protein_GI_number: 19552525 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Corynebacterium glutamicum # 329 855 22 548 587 792 71.0 0 MSNEYPYASMRDSFDLSAYFVVGPEDCKGRPLTDVVDQALHGGATFIQLRAKEADASELT DMARDIAQIIEDNEKSDSVAFVIDDRADVVWQARRKGIKVDGVHIGQTDMEPREARALLG DEAIVGLSAETESLVRLINELPDGCIDYIGAGPLHVSTTKPEASVGGNDGSGKTLDAAQI NTICVASEFPVVVGGGVTAADMAMLAGTKAAGWFVVSAIAGAENPEEAARTMVEGWKAVR GDKKHGYAPRVVTHTPATDTQAAQEGAAKPGSEATEKKFTNAKDAKDAQKLAKQQRVDIA ARGSKQRDKAHIRKTKSVPFTYQYGSYDLEVPYTEIKLSDTPGVGPNPPFHDYNTEGPKC DPKEGLKPLRLDWIRDRGDIEDYEGRHRNLEDDGKRAIKRGRATKEWRGRKHEPMRAKDH PITQMWYARHGIITPEMQYVATRENCDVELVRSELAAGRAVMPCNINHPEAEPMIIGSAF LTKLNANMGNSAVTSSIDEEVEKLTWATKWGADTVMDLSTGNDIHTTREWILRNSPVPIG TVPMYQALEKVEDDASKLSWELFRDTVIEQCEQGVDYMTIHAGVLLRYVPLTANRVTGIV SRGGSIMADWCLRHHQESFLYTHFDELCDIFAKYDVAFSLGDGLRPGSLADANDAAQLSE LMTLGELTERAWAKDVQVMIEGPGHVPFDTVRMNIELEKAVCHNAPFYTLGPLTTDTAPG YDHITSAIGATEIGRYGTAMLCYVTPKEHLGLPNKDDVKQGVIAYKIACHAADIAKHHPH AMDRDNAISKARFEFRWLDQFNLSYDPDTAIAFHDDTLPAEPAKMAHFCSMCGPKFCSMA ISQNIRKAFGGEAAQQQIVKEAAAGIDSEALATAKANVDNGVVSANVLSPEEILAGMDAM SEKYTAQGGKLYSTAQE >gi|316916932|gb|ADCN01000001.1| GENE 18 22456 - 22722 257 88 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1352 NR:ns ## KEGG: BLJ_1352 # Name: not_defined # Def: vesicle-fusing ATPase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 63 30 92 402 132 100.0 3e-30 MPNGHTTQLTFPRQEVFDVGDVLLVGTDFYRKVPHDVWPLKPRVGIVRRALNEGVVLETS DGLGPDGAHFGTAFERVERRPELRHHRA >gi|316916932|gb|ADCN01000001.1| GENE 19 22926 - 23735 1131 269 aa, chain + ## HITS:1 COG:CAC3095 KEGG:ns NR:ns ## COG: CAC3095 COG0351 # Protein_GI_number: 15896346 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Clostridium acetobutylicum # 12 269 7 263 265 269 53.0 4e-72 MAQIATSTLPAVLAISGSDSSGGAGMQADLKTMLACGVFGMSAITALTAQNTTGVRSIQD TKPDILADQINMVFEDIPPVAVKIGMVSATDIIDVIAERLTFHHATNIVLDPVMVATSGA NLISDDAIAALTGKLFPMATVVTPNIPEAEVLTDTLIRDQEDMEAAAHRLVERYGCAALV KGGHGTEDANDVLAETDGTVTWFDGARINNPNTHGTGCTLSSAIASYLALGDTLPKAIKH AKKYLTGALKAQLNLGHGSGPMDHFWKYR >gi|316916932|gb|ADCN01000001.1| GENE 20 23786 - 24163 728 125 aa, chain + ## HITS:1 COG:Cgl1190 KEGG:ns NR:ns ## COG: Cgl1190 COG0011 # Protein_GI_number: 19552440 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 38 120 33 115 117 77 49.0 8e-15 MIIDRNAVTQEVPIDPETGKPYLNTVAAIQVSANGVGSEVSPYVAQAVEVIRESGLPQET NALFTNVEGDLDDVLKVAGEAAKKLAEQGYRTSLVLHMDIRPGFTGQLTEKPKLVDEILA DKQAK >gi|316916932|gb|ADCN01000001.1| GENE 21 24669 - 26048 1724 459 aa, chain + ## HITS:1 COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 33 458 7 445 452 219 32.0 1e-56 MTAAEQQISGNPAAMENAQARTTVTDQAKVQDIISRMDRAHETPMFHRIVTLVAAGMLMD SIDVYIGSAVASSTLATRWSTVAQNSTFMSAGFLGLLVGSLLAGFVGDLKGRRVAYQINL LLFGGFTFLGAFAPNMAVLSLCRLGAGLGLGAEIVTGFAMVNEFAPMNRRGHWCAIVSLV ANCGVPIAMLLCAWIIPRWSWRPLFVAIGLVAAIIWWLRRDIPESPRWLAVRGRYDEADA IVKQLEANGSEPIDAAAKADTSDTRNAGGRSLGICLLVAVVAVAATNVCSYAFTSWVPTI LVKRGINLSSSLLTSTVMMLGAPVGCLIGSLLIDRIGRKRTIVPAFLFTGVFGLMYAFQT STVSAIIVGFLLMMCLYVLMASVVAVYAPELFATKVRFRCVGFANAVAKLLNVLMPMVVG WMLTSLGATSIFVAISAIAIASMLIVGFFGAETAQKSVG >gi|316916932|gb|ADCN01000001.1| GENE 22 26132 - 26404 102 90 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1356 NR:ns ## KEGG: BLJ_1356 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 11 76 278 343 470 98 72.0 7e-20 MGAVAISRCLSPTKRPDVLVTDMSMGALDRTHQVIDVIEGRGEAAHSAVTPHDSTVDAAP GIACDITDADCPLETQTYPPAPASTVTNNY >gi|316916932|gb|ADCN01000001.1| GENE 23 26414 - 26530 171 38 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1357 NR:ns ## KEGG: BLJ_1357 # Name: not_defined # Def: LuxR family two component transcriptional regulator # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 38 1 38 230 73 92.0 1e-12 MGEARNRNILIGIVDNDPYALKVFGTLIERMSSDFAVI >gi|316916932|gb|ADCN01000001.1| GENE 24 26677 - 27087 256 136 aa, chain + ## HITS:1 COG:no KEGG:BLD_0127 NR:ns ## KEGG: BLD_0127 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 136 1 136 136 228 100.0 6e-59 MNRAQALSKLNRSDMRNAAAERGMQRLFTWNRAHWIGMVVLIAVLLLLQWSSSMYLMPDE VLDRAAKNLFVWFPGMVLHWPLVLGITNLILGSTRSGSLSFPLASAIIGPLAFGWTNLRL RPGFPYRSWAQGKAAI >gi|316916932|gb|ADCN01000001.1| GENE 25 27145 - 28542 1492 465 aa, chain + ## HITS:1 COG:all0778 KEGG:ns NR:ns ## COG: all0778 COG4826 # Protein_GI_number: 17228273 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Serine protease inhibitor # Organism: Nostoc sp. PCC 7120 # 64 455 6 370 374 134 27.0 5e-31 MSEQLMEQYRLRGQRKCRNACIAAIVTVVLVLAVAGGVWWTAGDGSALVRNMFKPKATPA TQPVVNSTATFAYRTAPEFLAMEAGDRGTGNVNYSPASMWMALAIAAQGANGTTRSQLNE LLGSGSLTDSDYQSLLSSINGQYSGAKSEMSAANSLWIDDDYSLASDYQSTVKKMFEAEV TTLPFDDQAAAKMSDWIAKHTNGSLKPKITLRDREVLSIINTVYADGRWKDPFEEQSTGN GTFHGEAGDAQVPMMHRTFSQMAYGHDEYNTWQRVEIPFDNGGNLAIVLPAEGHFDELAG DAEKLSWAFGTCSTASLGEGAMGCAADSMPGWGVSVNSVMVNVTLPRFTIDSMFDSEATI KAFEKLGVTDAFSAGDADFTKMIDTGSHGENLYIGSILQGTRIEVNEAGAKAMSFTKVGA DSVSAPVDNVEFTVDRPFLYSYVTPDGIPLFIGAVRNLGGVGGEN >gi|316916932|gb|ADCN01000001.1| GENE 26 28586 - 29626 1022 346 aa, chain + ## HITS:1 COG:mll4964 KEGG:ns NR:ns ## COG: mll4964 COG1609 # Protein_GI_number: 13474146 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 4 346 1 336 341 138 33.0 2e-32 MVTMKEIANKAGVSVSTVSLVLNGRDEGRVKSKIADNVRAIATKLGYQSNPLASSLRTGR THILGFISEEVATTPYAGGMILGAQTAASQFGYMLITVSTDGENSESEEIAALKRYGTDG FLYAKMSNRITHVPSSLAKTPLVLVDATDSLGKIPSVEPDEFQIGYDATTRLVKAGCARI AYVGCLEPLIAQDDRLEGYQAALRDAGLDYDDHLVVNVLNNGPALTAVSDLFDAEHPDGF FCFNDARAWYVYECAARRGLTVGKDISVVGVDNHRVFAETLEPTLTTVELPHFEMGYWAV AKLVSIIEGRSMDDVSWPATTAPLPPIDAPIPAKIHCTLIEKASVK >gi|316916932|gb|ADCN01000001.1| GENE 27 29840 - 31177 1933 445 aa, chain + ## HITS:1 COG:ECs3241 KEGG:ns NR:ns ## COG: ECs3241 COG0477 # Protein_GI_number: 15832495 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 9 426 7 405 415 306 38.0 5e-83 MASATKSAWKNPSYLQSSFGIFMFFCSWGIWWSFFQRWLISGVGLTNAEVGTIYSINSLA TLVIMFVYGVIQDQLGIKRKLVIVVSVIAACVGPFVQFVYAPMILAGGTTRWIGALIGSI VLSAGFMSGCSLFEAVTERYSRKFGFEYGQSRAWGSFGYAIVALCAGFLFNINPLINFWV GSAFGLGMLLVYAFWVPAEQKEELKKETDPNAAPTNPSLKEMVAVLKMPTLWVLIVFMLL TNTFYTVFDQQMFPTYYANLFPTEEIGNATYGTLNGFQVFLESAMMGVVPIIMKKIGVRN ALLLGATVMFLRIGLCGVFHDPVTISIVKLFHSIEVPLFCLPAFRYFTLHFDTKLSATLY MVGFQIASQVGQVIFSTPLGAFHDKMAQILPNNDMGSRVTFWVISAIVLCALIYGFFVIK HDDQEVGGDPFYTDKQLRQMEAAKA >gi|316916932|gb|ADCN01000001.1| GENE 28 31188 - 32744 2249 518 aa, chain + ## HITS:1 COG:ECs3243 KEGG:ns NR:ns ## COG: ECs3243 COG1621 # Protein_GI_number: 15832497 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Escherichia coli O157:H7 # 19 500 4 464 477 323 39.0 4e-88 MTDFTPETPVLTPIHDHAAELAKAEAGVAEMAANRNNRWYPKYHIASNGGWINDPNGLCF YKGRWHVFYQLHPYGTQWGPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGVFSGSAVID DNGDLRFYYTGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYR DPKVWKTGDTWYMTFGVSSADKRGQMWLFSSKDMVRWEYERVLFQHPDPDVFMLECPDFF PIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAGYMIGTWEPGGEFKPETEFRLWDCGHN YYAPQSFNVDGRQIVYGWMSPFVQPIPMEDDGWCGQLTLPREITLGDDGDVVTAPVAEME GLREDTLDHGSITLDMDGEQIIADDAEAVEIEMTIDLAASTAERAGLKIHATEDGAYTYV AYDDQIGRVVVDRQAMANGDRGYRAAPLTDAELASGKLDLRVFVDRGSVEVYVNGGHQVL SSYSYASEGPRAIKLVAESGSLKVDSLKLHHMKSIGLE >gi|316916932|gb|ADCN01000001.1| GENE 29 32940 - 33722 945 260 aa, chain + ## HITS:1 COG:mlr6798 KEGG:ns NR:ns ## COG: mlr6798 COG0600 # Protein_GI_number: 13475671 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Mesorhizobium loti # 11 247 30 266 275 112 29.0 7e-25 MSIAKRLKRRMPTVIAVIVLLAVWETWVDLGHVSPTMISAPSEIFAATIETWNTLGPAAA ITGYEGVVGFLFAVFFGIMIGIALYCSHTFNAAFYPLLAAAQTMPLISIAPLFLIWFGFE ISGKIVIVAVFGLFPIAVQTVRGLEAVPQFYSDVALTCGATPVWTLWHVKLRVAARQIYG GIRVSAAYIFATASTAEYLGARKGLGIWLQAAYNSFRTPLIFSATIVIILMTCVLMLAVN ASERILLGPAGDDEDPDADQ >gi|316916932|gb|ADCN01000001.1| GENE 30 33982 - 35052 1817 356 aa, chain + ## HITS:1 COG:mll1755 KEGG:ns NR:ns ## COG: mll1755 COG0715 # Protein_GI_number: 13471703 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Mesorhizobium loti # 43 355 33 338 338 186 35.0 4e-47 MKKSLVSKAAALVGALAMTFGFAACGQTNTADSSNSNTSDLKKVTFMLSWAPDTNHIGVY VAKNKGYFKDAGLDVDIVAVAQAGAEQAVNNGVADFALSNLTNVGVYTLKGAHIKQVLQV QQKPSAIWCALASNTAIKSPKDLDGKTFATFGSNESDAVVRRMIQTDGGKGEFDKVTVGT STFQTMESGKADFGGFYATWEGVQADMYGPKLNCFTEPDYGVPGNADTIGIITNDKTIKN NPDLVKKFTQATQKGYEYAYANPDDAAQILVDEAPDANLKPEFVKKSMQVIVDGQYWGDP AKIKDGSFVLGTNDFKGAQEYFDFLAEEDAYTDSHDKIIHEAPQAKDLATDEFIGK >gi|316916932|gb|ADCN01000001.1| GENE 31 35176 - 36363 238 395 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 180 393 107 312 316 160 45.0 5e-39 MVQCPDRIIASMDTGVDDALALAYLLGSADECELGGVIAGYGNVDANTAYANTCAVLDLF GRADIPVFLGSEHPSWADAFIPDAGCAQFHGDDGLGNTRLARSGALADGACVPGDDMSVD VPDEVVSVGGYLAGDIHAHPALGACSRVNRSQSVDHPQSAMPTALASGGKRRCSVDAADG IEYLIEQVREFGRDVTVLATGPLTDVDAAITRAPDIASKLRLVMMGGTLTQPGNCWDAVA ETNIIQDPEAANRVFHSGADITMVGLDVTHQCLLPQSAADRWRATGTKRGRFLADLADFS IKANLEADPALFSGGMPLHDPLAAAVALDSSLVDCFDLALRAETNTGDFNGVRGRTTGDP VGLVNHSMPHVHVALGVDSGRFLDEFVERMAEVCR >gi|316916932|gb|ADCN01000001.1| GENE 32 36632 - 37420 869 262 aa, chain - ## HITS:1 COG:MT2430 KEGG:ns NR:ns ## COG: MT2430 COG0020 # Protein_GI_number: 15841873 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 12 259 38 294 296 285 54.0 7e-77 MAFENVDYTSLDIPAAPFSDPARIPDFPKNKVPRHIGVIMDGNGRWAKQRGMVRTNGHQA AEPVVFDTIAGAIEAGVRYLSLYTFSTENWKRSPQEVRFLMGFSREIIHRRVEQMDEWGV RVRWSGRRPKLWKSVIDELEAAEERTKNNKVIDVVFCINYGGRAEIADACAAIAREVRDG KISGDRVTEKMIADHLYNPDIPDCDLVIRTSGEQRTSNFLPWEAAYAELDFVPELFPDCG RDVLWRSIDHYIHRDRRFGGVK >gi|316916932|gb|ADCN01000001.1| GENE 33 37423 - 38142 618 239 aa, chain - ## HITS:1 COG:MT2431 KEGG:ns NR:ns ## COG: MT2431 COG1381 # Protein_GI_number: 15841874 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 1 238 1 241 265 180 44.0 2e-45 MSLYRDEGVVLRTSKLGEADRIITILTRGHGKIRAVAKGVRRTKSRFGARLEPFMRVDVL IAEGRSLDVVSQAEAVAAYGAPIAADYAAYEAANVIVETIDKLASTEHEQLPNQYRLLIG ALNALAKQSHAPQAIGDSYVMRALALAGWTPRLGTCVVCGKAEPAYLSIASGGVMCEADH TTDARRIAPFVLNQFDALIRGDWSVLDAAPVERVVQELVEDWGEYYLERPIRSLRLIDS >gi|316916932|gb|ADCN01000001.1| GENE 34 38192 - 39970 1782 592 aa, chain - ## HITS:1 COG:no KEGG:BL0099 NR:ns ## KEGG: BL0099 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 592 1 592 592 1102 98.0 0 MPQEEEHRLTVRSKPWTSTHRLMVSLPIFIILIGVLVSISNLTTVPWNIEPTGQSMATLT DDTEVTFDNPSGETLPAKGTYEVTERYITLNMTRDGNLTKESGDRGKANADGGQAIKVLI REPQNASGKRPGVVFMHGAGYGTCDNSFGDVASDMASAGFVTAVLDKPVWNTTDINRDYP ASAKAYDQVIEYLRDQSDVDEAKVGIYATSESTWISSYLLEDDPDIAFQILLSPMVFSPR QSLGFFVTQDFTLVGANEGYQSIVQRVFSADTGLFGLNNFDLATLKPAAYAVPTYVAYGS KDVMTAQVDGVRAILYNAHKADNWNVTVRSYPVANHVLRLGDESEAGTPFADAYVDDLID WAVGTSAGLTQTSEKVAGTNLYQSIGLPGALKARRVGTIYGVILHVTVVLLLLASIVLAL VALGRKIAADARWRREKREAKHAGMLIPERPVVLGFAHGFGNALLTLTLTTLATLLIFFA GLGQVIMGVVKLAWGSAPTETPGVMYWSWPVIQVVSVLVLWAWSRVFMHLIEAASVRGLI QIPPRRESVRDIVTGADPVLASTRLGRILFWLVTFTMLYILLVFAFWGLFIY >gi|316916932|gb|ADCN01000001.1| GENE 35 40025 - 41245 1459 406 aa, chain - ## HITS:1 COG:MT2936 KEGG:ns NR:ns ## COG: MT2936 COG0821 # Protein_GI_number: 15842410 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Mycobacterium tuberculosis CDC1551 # 29 398 15 384 387 462 67.0 1e-130 MNTLNTENPIEKPFRKTGDPVDLTSESPLHPRRKSRRIMVGPVPVGGGAPISVQSMTNTL TANVPATLQQIAELTAAGCDIVRVAVPSQDDADALPEICRKSPIPVIADIHFQSKYVFQA IDAGCAAVRVNPGNIRKFDEVGPDICKAATDAGISLRIGVNAGSLDKELYARYGGPTPEA LVASALKEAHMFEDVGFHDFKISVKHHDVITMVETYRLLASKGDWPLHLGVTEAGPAWQG TIKSCLAFGALLAEGIGDTIRVSLSVPPAEEVKVGCKLLEYMGLRPRKFDIISCPSCGRA QVDVIQLASAVTEGLKDVTAPIRVAVMGCIVNGPGEAREADLGVASGNGKGQIFIKGKVI KTVPEDQIVDTLLTIANDIAAQMEADGQVPVNSTGPVVVPIQHPGH >gi|316916932|gb|ADCN01000001.1| GENE 36 41245 - 42435 1152 396 aa, chain - ## HITS:1 COG:Rv2870c KEGG:ns NR:ns ## COG: Rv2870c COG0743 # Protein_GI_number: 15610007 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Mycobacterium tuberculosis H37Rv # 9 389 38 408 436 335 53.0 8e-92 MSIASNSTVIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEA AVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIEAL KAGSQLALANKESVVAGGHLLFSAQVRENQINPVDSEHSAIWQSLRSGTHAEVAKLVVTA SGGPFRGWKRADMENITPEQALHHPTWNMGPVVTINSSTLMNKGLEVIEASRLFNVPPER IDVTVHPQSIVHSMVEFVDGATICQASPPDMRLPIALGLSAPDRMTNVAAACDWTQAATW TFEPLDDEAFPAVQLARHCLAASEKHTAVLNAANEQAVHAFLEHRLPYLGIVDTVKAVLD QMDAELRGNPLFTDVEEMNQLELEARRRADDLINKQ >gi|316916932|gb|ADCN01000001.1| GENE 37 42432 - 44135 1348 567 aa, chain - ## HITS:1 COG:no KEGG:BLD_0114 NR:ns ## KEGG: BLD_0114 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 567 1 567 567 852 99.0 0 MAQELREGDGKSGIARAGKRKWGYDPAQVDAFLERAHALYDSEGMNLTQHDIQNVSFDLR KNGYVIVQVDAALGRLERAVVDKQTTWEIAQHGRVTWKAKTEKLYHEVQNHAERNERERF KSGAPKQPSYDKKQVDRLVDQIVDKAAAALGVDGVTEDDVRSLADLNANTVNNVIFTQRK GKKGYDERQVDYFLNACVQLLSRLESYARVADFVSGEPAAPAQTATNVTVQANGVSPLFA SGTQRPATDERFAPAAVAHDESFDALHQAEQSLFTAPAPVAPATPAAAAPISYAPAPASF DASTSTNSTNAEQPVSFAPAAYLVHASNESAAKPVSETPSVAPTAVAAAEPPVSAPSAPV SGVTAGSVPSFAPAQAAHEPAAPSSTPSVFAEQPVDMVQNDSSLAALAHMAAVSQELPAV DAPSFAPKMPSLDAPNALKLNEVPGSVSSPAPSAPAVQPVNSTADEAASAAMPVSFAPTS KPDRNTNSIPVRVSDSQPADSTISRPAAESSEYVAASHDTEAAQPSQDKHDSSDSFPLLF PLGGNFDSDIPDLSFPTLNNDDTKKEQ >gi|316916932|gb|ADCN01000001.1| GENE 38 43986 - 44348 157 120 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227546831|ref|ZP_03976880.1| ## NR: gi|227546831|ref|ZP_03976880.1| hypothetical protein HMPREF0175_1255 [Bifidobacterium longum subsp. infantis ATCC 55813] # 67 119 1 53 54 99 94.0 8e-20 MLGEIHALAVIQSMGALQESVHLSGVIPPLALARTCDARLAVPFTKFLRHRLFDLLLDIN TLPQLYVTIETHLTKKTEIHDFVAVLPVSFCTHLIEISEPLPKTVREYHHSLYPWNEGIA >gi|316916932|gb|ADCN01000001.1| GENE 39 44604 - 45020 560 138 aa, chain - ## HITS:1 COG:no KEGG:BLD_0113 NR:ns ## KEGG: BLD_0113 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 138 1 138 138 236 100.0 2e-61 MNQTASQNAEEFGFEPGDIVQEWLWDDDVDDSIRAQIEELTGEDLVDEDYDSAVDGVIVW WRDGDDEDELSDTIVDAYAVLGNDGPLWILTPKPGRPGATSSSTVQSAAQTAGMNAATPL TVSSDWNGIRLRAFGKGR >gi|316916932|gb|ADCN01000001.1| GENE 40 45136 - 46017 990 293 aa, chain - ## HITS:1 COG:Rv3194c KEGG:ns NR:ns ## COG: Rv3194c COG3480 # Protein_GI_number: 15610330 # Func_class: T Signal transduction mechanisms # Function: Predicted secreted protein containing a PDZ domain # Organism: Mycobacterium tuberculosis H37Rv # 176 291 227 340 340 94 48.0 2e-19 MPSFEVKHDSRLSRGISRARAYAAARPKRHFVGAFAVLLGVVILLLPSPYVIEMPGPTQD VLGKVEDGAVIDITGTGVTTYKDSGKLLLTTVNASGVPGYPIINAQAVWGWSNPQVEVMP REATVPVGQSADQYQKKVEQDMAGSQDSASAVGLAYAKAHADELGIDASALQHAKVTMHV DSIGGPSAGMMYTLGLIDKLTPANESGGKTIAGTGTIDKDGKVGRIGGIELKMLGSKRDG ATWFLAPASNCSDVAGRVPDGLRDVKVATLDEAYQALVAIGKGQADDLPHCEA >gi|316916932|gb|ADCN01000001.1| GENE 41 45994 - 46152 61 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHFERWHVLISRFRIRSRALLLLDEVWFLIPVACKHTLQCKRRAEIGRKRT >gi|316916932|gb|ADCN01000001.1| GENE 42 46238 - 47983 2022 581 aa, chain + ## HITS:1 COG:MT3287 KEGG:ns NR:ns ## COG: MT3287 COG5282 # Protein_GI_number: 15842777 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 320 514 225 422 472 149 43.0 2e-35 MDDNAIHEWLIKCFGPIQGEMAWQQISQLPEEIREQLMSQDPSRLPNPSEVQQMMAAFSA GGLNTMGDMQRTVEEGPINVKLAKSIALQQANASGSASSVSAVDGEAARHAMSEANLWLD TACEFNPAPGDPDVLTRAGWVEGTIDQWAKFAAPVAESMNDALASVISERLGGAFGDGEI AGMFAGPVPIPIPDGMKDPAQLMKLLGNTSFAMQLGHAAGNLSHEVHGSFDQGIALLKNP AGGLIAQNATEYAKMLNGEASAAEADTAGTSTDSVNPFSTSTDASANPIGFTSAGNSDTP ATDGTAQVSGSDASADAADAAAFEAALSGFETTEKIPESEVLSFLALQEMAHARLYASVP WLMPRFEALIGKYARGISIDLDAMEEQLRDATSMDPESISGAVNLTKVGIPDTPEQREAL ASLESLLAMVEGWVDCVVWRAGMAHLPHIEQLREMMRRERAMGGPAERTFESLLGLQLRP KRMREATGLWEMITAAEGPEGRDAKWSHPDLLPSLPGDKPADGASPSSDAPSGSSSDANG SASHPAADGKTGDIDWDAELSKLLGEDGEDGENGNSEDTQA >gi|316916932|gb|ADCN01000001.1| GENE 43 48056 - 49630 1146 524 aa, chain - ## HITS:1 COG:MT3291 KEGG:ns NR:ns ## COG: MT3291 COG0210 # Protein_GI_number: 15842783 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis CDC1551 # 7 524 8 577 700 295 40.0 2e-79 MEQAQGILEGLDERQRTAATTLQGPVRIIAGAGAGKTRTVTRRIAYACATGAWKPERVLA VTFSVKAAAEMRARLGQLGVGGGTGRSGLGAGTAGVTAATFHSAALHQLNSVWADICEAP FPHVIEDQRDVVSRAIIRATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQ PPAGLDTARFADVYSAYEQEKTSRGEIDFDDILLLVCHIMDGFPEAAAQIRSTIGWLTVD EYQDVSPLQHRLLTLWLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF GPLAADVNLNTDYRSTPEVVNLANRVLAAAPNREDYLKLVSARESGPRVTRTAYESDMEE AQGVAARIARLVANGAKPSDCAILTRINAQQPVFGAALRAARLKYRVRKDSGWQSSALAD DAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSPET GDALEEERRLMYVGITRAEDSLHLSYARTKDGYGVQRRRPSRFL >gi|316916932|gb|ADCN01000001.1| GENE 44 49776 - 51431 1313 551 aa, chain + ## HITS:1 COG:no KEGG:BLD_0109 NR:ns ## KEGG: BLD_0109 # Name: not_defined # Def: putative aminoglycoside phosphotransferase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 551 1 551 551 953 99.0 0 MKRSDYMLAALASAVLPNLGVAGVRENVQASATDEAKGIDQTVIQDASGKLYDVYATDTK EGRTRLIRRVKAAQTLAAAREPGGLGFDMDRVVAFAPGDVSRPGQTATAQAVGQQTQAES TPLTPRKPGPTGETTVMIAVHRDGQARPLDLLTLDDCAAVGTAIGAIHRLPSTFLANAKY PVVTTGQIRSQLTAWIRRLRSAGHVPQEITDSWARIMDTEGLWSFSTCTVHGGFSDGDFL FSGSTITTVTNWQDMQVNDPARDLAWIFGKLDESHRNAVLSAYGRMMGSRLDDLIMLRAN LWLQMEQVGEFIQALNRADNDHIMQFKAQVERLAHQLGVIKHTPAPAPAAGSAAASSTKP GLPSTITVGTLLQDDRHQAPAQPQQSDTGTAAAEVSDDTPDPDRTGSADIVAAGDVDLTP EVEPDADRTANHPQANVSGIATGTGSTKPQPSHGASHSSVTITLKELLSMNGHSGTTSTD ASPASQSAAPTDDAVNDDTPDSLVQYGASSAQTTVIPLLEREERALRDARAGLDGYDSEG NPLAESSTSSK >gi|316916932|gb|ADCN01000001.1| GENE 45 51580 - 51804 404 74 aa, chain + ## HITS:1 COG:no KEGG:BLD_0108 NR:ns ## KEGG: BLD_0108 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 74 1 74 74 128 100.0 8e-29 MDIELGIQNVARPVNFSTDESADNVSQAIAQAVADNTTIDLTDDKGRRIIVPAKALGYAI IGSETKHAVGFGTL >gi|316916932|gb|ADCN01000001.1| GENE 46 51865 - 52758 620 297 aa, chain - ## HITS:1 COG:BH2283 KEGG:ns NR:ns ## COG: BH2283 COG0613 # Protein_GI_number: 15614846 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Bacillus halodurans # 19 266 8 255 290 133 36.0 4e-31 MEGMTGYVMPLEPPAVGWDIHCHTAFSDGTETPATLAEQSKALGLKGVAISDHDTTAGWP EAEAAAHRVGLPLLRGTEITATDENVSVHMLGYQYDPTNQHIADLFANTRAARLQRTQRM VELLSRDYPITWQSVLAQVKEGGKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYY IPTPSPTSHEVVAAVKGAGGVILIAHAGDVSRNRRLLSDDQIEALISEGLDGLEVWHRGN SPEQRERLLTICRRHQLLVTGGSDWHGKGKPNKLGENLTDEATVEEIVHRGVLPLYR >gi|316916932|gb|ADCN01000001.1| GENE 47 52766 - 53014 136 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRYVQVALWRHPINGRASAKPSGVVFVVLDDVSVAVLRVIMSLSIALRSRLASAVVSWVP NVWFRPLAEGDDLSAPCVGMLK >gi|316916932|gb|ADCN01000001.1| GENE 48 52896 - 53633 710 245 aa, chain + ## HITS:1 COG:MT3046 KEGG:ns NR:ns ## COG: MT3046 COG4243 # Protein_GI_number: 15842521 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 41 165 26 145 210 67 35.0 2e-11 MTRNTATDTSSSTTNTTPLGLAEARPLIGWRHSATWTYLIMLIASAVALGASLILSAETL QLARHPESALGCDLNSAVSCSAVAQSWQAEIVKFGGLSYPNAFFGIAAESVFVTIAVIGL ARVKVPRWFATCTWLGGLAALAYSYWLSTQSLFVIHALCPWCLTLMFSTTIQFMALSHAT VAVQGLPSRKAVAADDSDGEAEVAMVPAGLNKYYRLNIDLMVDILWIVAIVVLIIVTEGA ALFAA >gi|316916932|gb|ADCN01000001.1| GENE 49 53639 - 54532 1047 297 aa, chain - ## HITS:1 COG:Cgl1898 KEGG:ns NR:ns ## COG: Cgl1898 COG0253 # Protein_GI_number: 19553148 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Corynebacterium glutamicum # 1 292 1 271 277 124 34.0 2e-28 MSLPQRVTKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSD LSDDQLSDVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRA GVKILTPRGNMRPYGANVFQVEMGEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGE TLSCGTGLCATGIVLRAKTGISHWDITVRGGTLRVDVTDSDVKLTGAATLVADIDLL >gi|316916932|gb|ADCN01000001.1| GENE 50 54640 - 55434 772 264 aa, chain + ## HITS:1 COG:CAC3250 KEGG:ns NR:ns ## COG: CAC3250 COG0796 # Protein_GI_number: 15896495 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Clostridium acetobutylicum # 6 264 7 256 256 207 41.0 2e-53 MSSSAPIGVFDSGLGGISVARQIAKDMPAEHVLYFGDSANAPYGIKTPEQVRALSFDIVE RFVRQGVKAVVIACNTATSAAVNDLREHYDIPIIGMEPALKVACDRGDVPSDPHHIPQRV IVAATPLTLRERKFAKLMDRFDSNNTIFKEPCPDLVEIVESGRLGDHDLVMRTLHGYFDQ YDMEHIDSVVLGCTHFVFYRDYFRELLPERAAVIDGNEGTVRHLGVVLESLGKLAPEDAT GGVELANSDPSERIAELSRKLLNV >gi|316916932|gb|ADCN01000001.1| GENE 51 55563 - 56408 1133 281 aa, chain + ## HITS:1 COG:CAC2424 KEGG:ns NR:ns ## COG: CAC2424 COG4667 # Protein_GI_number: 15895690 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Clostridium acetobutylicum # 1 273 1 270 283 135 30.0 6e-32 MTKTAMIDVGGGFRAIFGCGVMDRMLEDGIDVDMCYGVSAGAANMTSFIARQHGRNHTFY TKYAFRKEYASAESFFKNHNFANLDYIYGTLSNHDGENPLDFAAFEANETGFTVVACNAE DGSTKYFDKSRVRFDDFDIIKASSAVPVACEPYVVDGVPYFDGGIADPVPVQKALEDGYD RVILILSRLRDEVRKQQKDLAPARILERSHPAAAEKLRMRYKTYNDELELAKHYEAEGRV LILAPEDLYGLNTLKKNFEGLEMMYRKGYAAAEAIPAFLQA >gi|316916932|gb|ADCN01000001.1| GENE 52 56475 - 57392 1416 305 aa, chain - ## HITS:1 COG:SPy1884 KEGG:ns NR:ns ## COG: SPy1884 COG0330 # Protein_GI_number: 15675701 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Streptococcus pyogenes M1 GAS # 9 300 3 295 296 231 42.0 1e-60 MTIASMLGGTMLLVLILLVVLIVLLGAALFIVPQQQAYIIERFGKFLKVQFAGIHVRIPF VDRIAMKTNMRVNQLNVQLETKTLDNVFVTVVASTQFRVNPNDVATAYYELRDPAGQLRS YMEDALRSAIPALTLDDAFARKDDVAFDVQKTVGAEMSRFGFTVVKTLITAIDPSPQVKN AMDSINAAQREKEATRQRAEAQRIQIETQAAADAEKTRLQGEGQANYRREIANGIVDQIK SLQAVGMDINDVNNVVLFNQYLDVMRSLSESKNTKTVVLPASTPGGYQDLYEQVTKAMLT ASETK >gi|316916932|gb|ADCN01000001.1| GENE 53 57566 - 57959 316 131 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 131 1 131 358 227 92.0 8e-59 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDD Prediction of potential genes in microbial genomes Time: Fri May 13 12:31:39 2011 Seq name: gi|316916914|gb|ADCN01000002.1| Bifidobacterium sp. 12_1_47BFAA cont1.2, whole genome shotgun sequence Length of sequence - 18400 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 12, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 8 - 490 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 604 - 647 7.1 2 2 Op 1 31/0.000 - CDS 679 - 1341 824 ## COG0765 ABC-type amino acid transport system, permease component 3 2 Op 2 16/0.000 - CDS 1446 - 2258 1320 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 4 2 Op 3 . - CDS 2314 - 3072 592 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 3165 - 3224 2.5 - Term 3204 - 3234 1.1 5 3 Tu 1 . - CDS 3285 - 3530 351 ## Blon_0758 glutaredoxin-like protein - Prom 3573 - 3632 4.2 6 4 Op 1 . - CDS 3641 - 4951 732 ## COG2873 O-acetylhomoserine sulfhydrylase 7 4 Op 2 . - CDS 5013 - 6245 1216 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 8 5 Tu 1 . + CDS 6418 - 7068 618 ## COG0400 Predicted esterase 9 6 Tu 1 . - CDS 7077 - 9332 2051 ## COG0480 Translation elongation factors (GTPases) - Prom 9405 - 9464 3.4 + Prom 9392 - 9451 3.6 10 7 Tu 1 . + CDS 9479 - 10186 636 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 10224 - 10257 -0.1 - Term 10104 - 10168 0.2 11 8 Tu 1 . - CDS 10188 - 10778 764 ## COG0194 Guanylate kinase 12 9 Op 1 3/0.000 - CDS 10958 - 11878 1364 ## COG0284 Orotidine-5'-phosphate decarboxylase 13 9 Op 2 24/0.000 - CDS 11878 - 15261 5123 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 14 9 Op 3 . - CDS 15263 - 16486 1841 ## COG0505 Carbamoylphosphate synthase small subunit 15 10 Tu 1 . + CDS 16461 - 16664 145 ## + Term 16767 - 16816 1.3 - Term 16629 - 16661 3.0 16 11 Op 1 6/0.000 - CDS 16676 - 17248 851 ## COG0781 Transcription termination factor 17 11 Op 2 . - CDS 17303 - 17869 1047 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Term 17885 - 17915 -0.5 18 12 Tu 1 . - CDS 17970 - 18398 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916914|gb|ADCN01000002.1| GENE 1 8 - 490 209 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 141 176 312 317 85 40 3e-16 GHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTH DNGTEFAHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVR EIVDEINNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK >gi|316916914|gb|ADCN01000002.1| GENE 2 679 - 1341 824 220 aa, chain - ## HITS:1 COG:SMc03893 KEGG:ns NR:ns ## COG: SMc03893 COG0765 # Protein_GI_number: 15967029 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Sinorhizobium meliloti # 8 219 7 218 226 197 55.0 2e-50 MDARVWGIVVDSFAKLLIPGITVTIPLTLISFALGLILAIVVALVRVAKVPVASQIAWFY IWVFRGTPLLVQLFVIFFGLPSVGITIPALPSAVIAFSLNVGAYAAETLRGAILAVPKGQ LEAGLAANMPYVTIMRRIILPQAFRSAFPALFNSFIALVKDTSLAANITVVEMFMTAQRI VAIYYEPLVLYIEVGLIYLLFCTLLGWLQDYCEKKLNEHF >gi|316916914|gb|ADCN01000002.1| GENE 3 1446 - 2258 1320 270 aa, chain - ## HITS:1 COG:mll3861 KEGG:ns NR:ns ## COG: mll3861 COG0834 # Protein_GI_number: 13473306 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Mesorhizobium loti # 9 269 9 267 267 205 44.0 6e-53 MFNNQVIRKAAALLSGVAVLVSVAACGSASASNSSALEQVKQAGKIVFATEGTYAPFSYH DSKTNELTGYDVEVAKAIAKEVGIKAEFAEGSFDSLLAGVDAKKYDTVADQISATDERKA KYDFSEPYTYSYGVVITSKENPKNVTSFDDVKGLRAAETGTSNWNKTAQEKGATIVQVND FGQQVDAITSGRADVSLNDGLAALDYLKQKPDADIKIAAKSEKTPAAYLPFRKGSDDLVK EVNKAIVKLQKDGTLTKISEKYFGEDFSQE >gi|316916914|gb|ADCN01000002.1| GENE 4 2314 - 3072 592 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 240 245 232 48 1e-60 MIRIRGVSKSFADTTVLDGLDLDIPRQNVVTVIGPSGSGKSTLLRILDFLEHADSGTVDF GDGLVDLTTTKSADIHKVRSKIGFVFQNYNLFLNKTALQNVTEPLVYSKGIKPDEARKIA IEQLDRVGLADFHDRYPSTLSGGQQQRVSIARAVAMNPELLVLDEPTSALDPEMVNGVLG VIKQLGSEGMTMLMVTHEMRFAYEASNHVVFIEGGHVVEQGDPKRIFEHPQEERTVEFLS STNNVLMIPVTR >gi|316916914|gb|ADCN01000002.1| GENE 5 3285 - 3530 351 81 aa, chain - ## HITS:1 COG:no KEGG:Blon_0758 NR:ns ## KEGG: Blon_0758 # Name: not_defined # Def: glutaredoxin-like protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 81 1 81 81 163 100.0 2e-39 MAIDVYGATWCGDCKQAKNTLEELGAEYTWHNIETEDGAADRAVAISGQQHIPVVLYPDG TFQVEPSAVDIKNKLNELNIK >gi|316916914|gb|ADCN01000002.1| GENE 6 3641 - 4951 732 436 aa, chain - ## HITS:1 COG:lin0604 KEGG:ns NR:ns ## COG: lin0604 COG2873 # Protein_GI_number: 16799679 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Listeria innocua # 9 432 6 422 425 335 42.0 1e-91 MSITSGTGEFATRAIHAGYDPADYGHAAVPPIYASAAFDLENAQRGDALAGGLIDGFEYS RVANPTVDVLEKRLAALEGGIGAVAVGSGMAAVSYALMCVGEGGGRIIAPSNLYGASVDA LGDFLPQFGIHTDFVKHINDLAEVESKIGPDTRAIFAETVANPSTEILDIEPLSQLAHEH GIALIVDNTVPTPYLLRPIEFGADIVVHSTTKGITGHGNAIGGAVIDGGHLDWANGRFPQ FTTRQQVISDDRNGEWHSFAERYGNEAFIKRIRIKYLRTFGAVASPFNAYLSLIGLETLP QRVSQQVASAQRIAEHLNHAAHVMKVNYSGLGYTPQYELVGKYFPRGVGQILSFLVDGSA DNVRRIIDGATVFSYVPNIGDARSLIVDPARITHREVPLDARIAAGVSDNLIRLSIGLEN VDDLIADLDQAIANAY >gi|316916914|gb|ADCN01000002.1| GENE 7 5013 - 6245 1216 410 aa, chain - ## HITS:1 COG:CAC0391 KEGG:ns NR:ns ## COG: CAC0391 COG0626 # Protein_GI_number: 15893682 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Clostridium acetobutylicum # 3 389 2 377 377 361 46.0 2e-99 MTRFNTQLVHGLPVGDNNTGAVNPPIYNSTTYAFEKVDAMPRYDYARSGNPTRDFLEQQI AQLEQGTRGFAFASGLAAIHAVLSIFKPGDRIIVGDNIYGGSYSQLNEFFTRWGVVVESV NTQDIAALEAAVKGDRANGIAPAQAVYFETLTNPLLKVNDVRAISATARRYGALSIVDNT FVTPYLQQPFSLGADVVIHSATKYLAGHSDVNAGLVVVSGEDLANRVYFAQNRLGGVLAP TECDSVRRGIQTLALRMDRQQENANAIARYLLAHPLVKSVHYPGLPGAGDQRLAAKGLKG AGGVLSFEVVPGVDPADVLNNLHIFRLAVSLGAVESLAELPCRMTHFELPREERLKVGIT DELVRLSLGIEDAADLIEDLGQAFDIAYEQYLKRHADCDVFAQLTEEAFA >gi|316916914|gb|ADCN01000002.1| GENE 8 6418 - 7068 618 216 aa, chain + ## HITS:1 COG:lin0589 KEGG:ns NR:ns ## COG: lin0589 COG0400 # Protein_GI_number: 16799664 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Listeria innocua # 14 207 16 208 219 62 24.0 6e-10 MKIAKALTRLTGPETTPVFVLLHGWGSNEYDLPDLLNYCGAGSADYASLQAPIAYGMGYT WFGAWAHEGVPEGESLDKQATEAAQAIDAWVAEHIPATRPVVAMGFSQGGLLAAHLLRFN PKRYAAAVSCSGWLAPGSVAGDAELASLKPPVFYGHGAADDIFPKADVTAMGEFWHEHGT LTEQVYPGMAHSINMPEMRDIQRFLETNGFIRPQIW >gi|316916914|gb|ADCN01000002.1| GENE 9 7077 - 9332 2051 751 aa, chain - ## HITS:1 COG:CAC0854 KEGG:ns NR:ns ## COG: CAC0854 COG0480 # Protein_GI_number: 15894141 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 420 746 335 640 644 284 42.0 4e-76 MKQIVAGIVAHVDAGKTTLSEALLYRTGEIRKLGRVDHGDAFLDTNSLEKARGITIFAHQ ALVEHGDLRLTLLDTPGHVDFAAETERVLRVLDYAILVVSGTDGVQGHTETLWRLLARYG VPTFIFVNKCDAAGFDREAILAQLRKRLSDAIYPLPAMEQSTEGSAVPLDAFAEDIATLD EEAMNDYLEHGALSVGRLRAMIAVRELFPVYFGSALKLEGVEEFLDGLETFTREREWPAA FAARVFKIAHDGQHNRMTWLRVTGGALKAKEIVSSSSCAAASSAPSPVQGDDGTVWSEKV DQVRVYNGAKFETVTEVPAGSVCAVTGLTRTFPGEGLGAEPDAESPSLQPVLTYTVLPAG AESDTAGTSGAAKRGDAGHNNVNQDDAEHDAAKSGTGRNEENDTAGQTAADNSSPARPQF DDLTLHKVITALRELEDEDPLLHVVWVERLAEIHVQLMGAVQLEIIQQTLHDRFGLDVSF GPGSILYRETVTAPIEGAGHFEPLRHYAEAHILLEPGEPGSGVTVASALSENDLDRNWQR LILTHLTEREHLGVLVGAPLTDIKMTLVAGRAHLKHTEGGDFRQATYRAIRQGLMEARAG VSGRPETPVESRPDTAGEGNCRLLEPWYRFRLEVPADMIGRAMSDIQRMAGTFESPVTDG EYAVIEGEAPVSEMRDYAMDVNQYTHGHGRFSATFGGYKPCHDAEQVIAAAAYDPEADLD NTPDSVFCAHGAGYPVKWYKVPEFAHVDYAM >gi|316916914|gb|ADCN01000002.1| GENE 10 9479 - 10186 636 235 aa, chain + ## HITS:1 COG:FN0281 KEGG:ns NR:ns ## COG: FN0281 COG2176 # Protein_GI_number: 19703626 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Fusobacterium nucleatum # 26 197 419 583 1454 128 38.0 8e-30 MTTSGITVFGQPSQPNHGAGGRIAMDDAVFPTDYVALDLETTGFYPNSCAITEIGAVRVR EGHIVDQFQQLVNPLRPIPRQITTLTGITDAMVADLDPIDEVLPRFIAWLATPAAGPAVE PIVGHNVSFDLRFLDYNTRHIAGCGFACADYDTMQISRALFPAQRHHRLADLIVRFGIAD NEEHRALSDAIQTQQCFEWMRHYVTEHHETEAIRWKQAPAKNSAEILHQQLVVKR >gi|316916914|gb|ADCN01000002.1| GENE 11 10188 - 10778 764 196 aa, chain - ## HITS:1 COG:MT1434 KEGG:ns NR:ns ## COG: MT1434 COG0194 # Protein_GI_number: 15840848 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 8 190 30 209 217 165 51.0 5e-41 MTENTHAGRLIVLTGPTAVGKGTVEAKLRADHPEVWVSVSATTRAPRPGEVDGVNYWFLT EDEFLAREAAGEFLETAVVHGMAHYGTLLKPVEEHLAAGVPTILEIDLQGARRVKQRAAE LDLEVVYVFIAPPSFEELERRLIGRGTETAEQQARRLETAKVELAAESEFDVTIVNETVD QAAADLWSVIAKEYGL >gi|316916914|gb|ADCN01000002.1| GENE 12 10958 - 11878 1364 306 aa, chain - ## HITS:1 COG:Cgl1570 KEGG:ns NR:ns ## COG: Cgl1570 COG0284 # Protein_GI_number: 19552820 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Corynebacterium glutamicum # 16 290 3 271 278 155 35.0 1e-37 MTTLSSEELQAQRSDFGLRLSNSMAKYGPLCVGIDPHRKLLTDWGYNVDAEGAELFSMRM LQAANGRAAAVKFQTPMFERYGAKGFEALERVLYAARQMGVITIVDCLRGGLSTTISAIA DAYFKPGAPLLADAITLLPYYGARSLNGLITEALENGRGVFIASLTSNPEGMSLQTALRQ SGDYKGRTVAYGIASTAQKHNVDIEGMGSVGLIIGATIGQWMQDSGVDPSKFTGPILSPG YGWQGAEAKDLKTVFRGTRGNVLVTVSRFIASHGPDIAALSQATESIALDVRQALMEATV EGSENQ >gi|316916914|gb|ADCN01000002.1| GENE 13 11878 - 15261 5123 1127 aa, chain - ## HITS:1 COG:MT1428 KEGG:ns NR:ns ## COG: MT1428 COG0458 # Protein_GI_number: 15840842 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Mycobacterium tuberculosis CDC1551 # 1 1124 1 1115 1115 1273 60.0 0 MPKRTDIKSVMVIGSGPIVIGQAAEFDYSGTQACRVLREEGIRVILVNSNPATIMTDPEM ADATYIEPIATPILEQIIAKERPDALLPTLGGQTALNAAMALGEAGVLEKYNVELIGASL EAIDRGEDRELFKKVVDEAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSG IAHNEEELHRIAGAGIHYSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVDPV GVHTGDSITVAPCFTLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEM NPRVSRSSALASKATGFPIAKIATKLALGYTLDEIRNDITQSTPASFEPTIDYVVTKVPR FAFEKFPGADPTLTTSMKSVGEAMALAGNFQESLGKAMRSIDKRHMGFNWDGEKPSAEEV AELLEAIHTPTEHRYLQLMRAIWGGATLEQVFAATKIDPWFLKQIFLINETAMTVREAET LTPRLLKKAKLAGLSDVQVAHLRGLGDEGENTIRELRWTYGLRPVYKTVDTCAAEFDAAT PYYYSCYADETELRPREREAVIILGSGPNRIGQGIEFDYTCVHAVQELGKDYDTIMVNCN PETVSTDYDMSDRLYFEPLTFEDVLEIYEAEKKMGPVKGVIVQLGGQTPLSLAARLKAAG VPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRIGYPVLVRPSY VLGGRGMEIVYDDKQLNKYVDRALAEAKADTVVSGRLPSPLLIDKFLQDAIEIDVDALFD GEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREGTYAIAKGCHVQGLINVQ YAFMANTLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIADQRANGLLLPKGDG GDIHPGQQVAVKESVLPFKRFRTPVGKTVDILLGPEMRSTGEVMGFDRDFPHAFAKSQLA AYDGGLPTHGNVFISVNDTDKRQLPLIAVRLEELGFKLWATEGTASVLRRYGIESNIVDK ISTRVDTDPEAPVEVHHAAGSVGKNVVQLIEEGKIDMILNTPNSRGSRSDGYSIRAAAIA ADLPQFTTITEFQAALLAIEAVKHNDYQIMSIQEHSKQLFELERREF >gi|316916914|gb|ADCN01000002.1| GENE 14 15263 - 16486 1841 407 aa, chain - ## HITS:1 COG:ML0535 KEGG:ns NR:ns ## COG: ML0535 COG0505 # Protein_GI_number: 15827191 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Mycobacterium leprae # 19 399 4 371 375 429 57.0 1e-120 MSQNESGTIAIPMYDKDDAVLVLEDGQVYVGKPYGALGETTGEIVFATGMTGYQETLTDP SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNG IVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLS LYDEVSTKETYTIEPCGEYEGKEPLYTVAAVDLGIKGMTPHRMAERGCRVHVVPSTITFA EIENLNPDGVFFSNGPGDPEQAGPEIELLRQVLDAGYPFFGICFGNQLLGRALGFGTYKL KFGHRGINQPVKDLTTGKVEVTAHNHGFAVDAPIGKQVDAPFENGKYGKVFVSHIDLNDD VVEGLQCVDIPAFSVQYHPEAAAGPHDAAYLFDRFCELMKNNSKEGK >gi|316916914|gb|ADCN01000002.1| GENE 15 16461 - 16664 145 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVPDSFWLTKTPLCFSGIRTKVNGQRRLTRRWAQSLTPLAGLSARCRLENVRRHKCPPMK KPPEWGG >gi|316916914|gb|ADCN01000002.1| GENE 16 16676 - 17248 851 190 aa, chain - ## HITS:1 COG:ML0523 KEGG:ns NR:ns ## COG: ML0523 COG0781 # Protein_GI_number: 15827185 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium leprae # 2 128 7 136 190 102 43.0 3e-22 MARSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPDYAIEIVKGVAEHRRQID MTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDDSPAF IHGLLSAVCTAKNAAPAPESVAEEADEESSDSDAAASEPTDEGDVSDSPDSSGASDEPAA PSAEIQPTVD >gi|316916914|gb|ADCN01000002.1| GENE 17 17303 - 17869 1047 188 aa, chain - ## HITS:1 COG:ML0522 KEGG:ns NR:ns ## COG: ML0522 COG0231 # Protein_GI_number: 15827184 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Mycobacterium leprae # 4 187 3 186 187 246 65.0 1e-65 MAQTTNDIKNGSVLNLDGQLWTVMKFQHVKPGKGPAFVRTTIKNVLSGKIVDKTFNAGMK MEFETVDNRTLQYSYEDGDNFVFMDMTTYDQIMVPKTLVGDKAKFLLEGTDCLVSFHDGT PLSVDLPGSVVLTITHTEPGLQGNRSNAGTKPATVETGAEIQVPLFINEGDRVKINTEDG SYTGRENN >gi|316916914|gb|ADCN01000002.1| GENE 18 17970 - 18398 199 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 5e-15 VERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 12:32:01 2011 Seq name: gi|316916874|gb|ADCN01000003.1| Bifidobacterium sp. 12_1_47BFAA cont1.3, whole genome shotgun sequence Length of sequence - 46905 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 26, operones - 11 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 417 323 ## Blon_0449 integrase, catalytic region - Prom 452 - 511 2.2 2 2 Op 1 . + CDS 511 - 1248 827 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 3 2 Op 2 . + CDS 1245 - 2033 1044 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 2172 - 2221 0.2 4 3 Op 1 . - CDS 2110 - 2817 722 ## COG1376 Uncharacterized protein conserved in bacteria 5 3 Op 2 . - CDS 2876 - 3184 217 ## BLJ_1413 hypothetical protein 6 4 Tu 1 . + CDS 3105 - 3578 335 ## BL0061 TetR-type transcriptional regulator + Term 3698 - 3754 -0.8 - Term 3595 - 3632 9.8 7 5 Tu 1 . - CDS 3675 - 4649 1383 ## COG1250 3-hydroxyacyl-CoA dehydrogenase - Prom 4721 - 4780 3.8 - Term 4797 - 4847 13.2 8 6 Op 1 1/0.200 - CDS 4864 - 5010 124 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 9 6 Op 2 . - CDS 4988 - 6688 2399 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 10 7 Tu 1 . - CDS 6800 - 7099 544 ## BLD_0072 ABC-type sugar transport system periplasmic component - Prom 7155 - 7214 1.7 11 8 Op 1 . - CDS 7262 - 9412 1758 ## COG3525 N-acetyl-beta-hexosaminidase 12 8 Op 2 . - CDS 9508 - 10323 1015 ## COG0395 ABC-type sugar transport system, permease component + Prom 10734 - 10793 2.0 13 9 Tu 1 . + CDS 10923 - 11765 563 ## BL0054 hypothetical protein - Term 11656 - 11706 1.3 14 10 Op 1 . - CDS 11755 - 12006 120 ## BAD_0852 cation transporter 15 10 Op 2 . - CDS 12039 - 13154 1461 ## COG0489 ATPases involved in chromosome partitioning - Prom 13262 - 13321 2.4 - Term 13265 - 13307 -0.9 16 11 Op 1 . - CDS 13330 - 16092 3082 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 17 11 Op 2 . - CDS 16157 - 19780 3386 ## BLJ_1425 hypothetical protein - Prom 19824 - 19883 2.5 18 12 Tu 1 . + CDS 19842 - 22139 1713 ## BL0050 hypothetical protein + Prom 22168 - 22227 2.5 19 13 Tu 1 . + CDS 22274 - 22936 949 ## BLD_0063 arylsulfate sulfotransferase 20 14 Op 1 . - CDS 22993 - 23778 1089 ## COG1122 ABC-type cobalt transport system, ATPase component 21 14 Op 2 . - CDS 23826 - 25085 974 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Term 25281 - 25316 7.2 22 15 Tu 1 . - CDS 25362 - 26129 1225 ## COG1940 Transcriptional regulator/sugar kinase - Prom 26172 - 26231 3.4 23 16 Op 1 . + CDS 26095 - 26319 164 ## 24 16 Op 2 . + CDS 26375 - 27160 884 ## COG0778 Nitroreductase - Term 27149 - 27201 13.4 25 17 Tu 1 . - CDS 27202 - 28224 1565 ## COG1216 Predicted glycosyltransferases - Prom 28463 - 28522 2.3 + Prom 28250 - 28309 1.8 26 18 Tu 1 . + CDS 28467 - 29120 1049 ## COG3601 Predicted membrane protein + Term 29188 - 29231 14.7 27 19 Op 1 . + CDS 29251 - 31683 2152 ## COG1122 ABC-type cobalt transport system, ATPase component 28 19 Op 2 . + CDS 31755 - 32060 555 ## COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein + Term 32099 - 32143 13.1 - Term 32087 - 32131 13.9 29 20 Tu 1 . - CDS 32159 - 32494 307 ## BL0041 hypothetical protein - Prom 32524 - 32583 2.3 + Prom 32446 - 32505 1.7 30 21 Tu 1 . + CDS 32574 - 33251 802 ## BLJ_1435 TM2 domain-containing protein + Term 33345 - 33388 14.0 31 22 Tu 1 . + CDS 33677 - 34096 742 ## BLD_0051 membrane-anchored glycerophosphoryl diester phosphodiesterase-like protein + Term 34134 - 34185 18.5 32 23 Tu 1 . - CDS 34221 - 35207 737 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 33 24 Tu 1 . + CDS 35507 - 36964 1739 ## COG0477 Permeases of the major facilitator superfamily + Term 37177 - 37202 -0.5 34 25 Op 1 11/0.000 - CDS 37190 - 38212 1466 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 35 25 Op 2 21/0.000 - CDS 38209 - 39279 1480 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 36 25 Op 3 16/0.000 - CDS 39281 - 40795 2312 ## COG1129 ABC-type sugar transport system, ATPase component - Prom 40832 - 40891 2.0 37 25 Op 4 . - CDS 40963 - 41946 1674 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 42077 - 42136 4.9 38 26 Op 1 . - CDS 42262 - 43932 1104 ## BL0032 hypothetical protein 39 26 Op 2 40/0.000 - CDS 43989 - 45686 1297 ## COG0642 Signal transduction histidine kinase 40 26 Op 3 . - CDS 45683 - 46405 911 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 41 26 Op 4 . - CDS 46488 - 46904 187 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916874|gb|ADCN01000003.1| GENE 1 3 - 417 323 138 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 138 1 138 358 242 92.0 4e-63 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCP >gi|316916874|gb|ADCN01000003.1| GENE 2 511 - 1248 827 245 aa, chain + ## HITS:1 COG:VC1448 KEGG:ns NR:ns ## COG: VC1448 COG2274 # Protein_GI_number: 15641459 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Vibrio cholerae # 38 236 493 689 720 102 34.0 5e-22 MCPRLDWMNMRSFFEAISVSCVIPAQSPADDERTVFENLSFAVERGEIVDLVGPSGSGKS SLLTAYARLNPHAHGAFALDGVGSDEFSAQQWRRDVSYLPQKPILTGKDVAEAIRLPWTL AIRGKGGKAEQLLPDERIRTTLDAMGCENIDLARAPHDLSGGQAARVALARTLLTDPKVL LADEADAGLDDDNASKVAAIMADAAAHGMAIIRIRHRPPDGRATRTLMLDAGRLTDLTRD KEVRP >gi|316916874|gb|ADCN01000003.1| GENE 3 1245 - 2033 1044 262 aa, chain + ## HITS:1 COG:slr1647 KEGG:ns NR:ns ## COG: slr1647 COG0390 # Protein_GI_number: 16331056 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Synechocystis # 16 255 17 256 259 132 31.0 5e-31 MNGAYDIDTWGLVLALGMVAAAAIISELMHMGIGRTLMWSACRALVQLCAMGFIISYVIR SNSVWMVFALMAVMLVAAVQIVMSRARGIPKGLAGPIFLSLVITMLLMLALVTELIVRPH PWYAPQLVVPLTGMLLGNTVTALAVGLSRFYESMEERRDEVDMMLALGATPWESARPSIV SSIRLGLLPTTASLASSGIVTIPGMMAGQVIAGGDPLNAAKYQFVVLDAIAALTLLADGL IMVMIYRTCFTADDQYRPPEAR >gi|316916874|gb|ADCN01000003.1| GENE 4 2110 - 2817 722 235 aa, chain - ## HITS:1 COG:BS_yciB KEGG:ns NR:ns ## COG: BS_yciB COG1376 # Protein_GI_number: 16077404 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 81 235 34 194 194 119 38.0 6e-27 MVRLPTLNVNWSRDRVYVIRRGVVACCILFCLIGAGVETAAAQRSWPRADTATAAATAAA NEPTAVTRKQVPDSGKQGGSRKTQNTQNGDDKAAQSVDWKGPTGKQPDLSQYSDLSVEVS LAKQRVYVKSGGQTIYTMIASTGVDDATPHGSYTIDTRGEHFYNAEEGMGADYWVQFYGS YLFHSVPTGEAFGDYLPEEGTKLGQPASHGCVRLAVADAQWFYDQVPDGTLVTIA >gi|316916874|gb|ADCN01000003.1| GENE 5 2876 - 3184 217 102 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1413 NR:ns ## KEGG: BLJ_1413 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 30 78 1 49 52 81 89.0 7e-15 MIAIRGMVIAHKTHNPIDSSVKFVTFIDAMLSLVVTQDVLLESQGTAHAAQSSGLFGIGL GAVTMIIGLWMLLRRRWTVPASGEDSPDDAVPAVEITAETEA >gi|316916874|gb|ADCN01000003.1| GENE 6 3105 - 3578 335 157 aa, chain + ## HITS:1 COG:no KEGG:BL0061 NR:ns ## KEGG: BL0061 # Name: not_defined # Def: TetR-type transcriptional regulator # Organism: B.longum # Pathway: not_defined # 2 117 119 234 296 219 93.0 2e-56 MKVTNLTDESMGLCVLCAITIPRIAIKKNPQLTQQTVKSLKEAFWKLYETKPIEKISVRQ ITELAGYNHATFYLYFSSVRDVRDQIEDDLIAQRDLILKQCMHDGTLEMGQHVGSRAVFC GCHRRHRSLRVSVCCPCAHHTVSVSAIVAIGDAYACR >gi|316916874|gb|ADCN01000003.1| GENE 7 3675 - 4649 1383 324 aa, chain - ## HITS:1 COG:AF2273_1 KEGG:ns NR:ns ## COG: AF2273_1 COG1250 # Protein_GI_number: 11499854 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Archaeoglobus fulgidus # 8 292 17 294 406 179 37.0 6e-45 MIETVDDIKTIANVGTGTMGHAITLQFALSGYPVHLVGRGEASLEKAMKAIRSDAEDFAE SGLLKDGDTLDAVLARITGYADYASGVADVDFVIESVAENLDIKKSVWAEVEHAAPKDAI LSTNTSGLSPTALQSVMGHPERFVVAHFWNPAQLMPLVEVVPGEKTDPKVVDITFDLMAK IGKKPAKIKKESLGFVGNRLQLAVLREAFHIVQQGIADAATVDDVMKYSLGRRWNLVGPI ASIDLGGLDVFYNISTYLFDDMDNGTGPSPLLAEKVKEGNLGAKTGQGFFSWQGEDGKRI IETRNKALLRALKDDAADAAAAQA >gi|316916874|gb|ADCN01000003.1| GENE 8 4864 - 5010 124 48 aa, chain - ## HITS:1 COG:TM0308 KEGG:ns NR:ns ## COG: TM0308 COG1501 # Protein_GI_number: 15643077 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Thermotoga maritima # 1 38 585 622 764 62 65.0 2e-10 MFVEFPDDPACRTLDRQYMFGPSMLVAPVFTYSGEVSYRFRCGCAMTA >gi|316916874|gb|ADCN01000003.1| GENE 9 4988 - 6688 2399 566 aa, chain - ## HITS:1 COG:TM0308 KEGG:ns NR:ns ## COG: TM0308 COG1501 # Protein_GI_number: 15643077 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Thermotoga maritima # 1 558 1 582 764 472 41.0 1e-132 MKFTNGYWMIRDGVDALYAREAYELAADATTESLNVLAPTSVVRGRYDTLNLPTFNVDIT TPAEGVIRVCAEHWQGATEYPGFPLNADEPGNRDYVTVQANGNGDGEVGVNGADVTLTTG GLTVKVVKGAPWNLTFIGEDGKVLTESAGKSLGRFKLGAESNVTAQPVSEFGVTMDGSAR DESDVFIAIQLHLSVGEDVYGLGERFGAYVKNGQSVDIWNEDGGTASEQGYKDIPFYMTS NGYGVLVNNRGHVSFEIGSENTEATINSFIDGMAERDIPLAAFHYDCYWMREFHWCDFEW DKRFFGDIESTLKRLHEDKGYLVRKPNGEVWQTDFWQAGMGLVDFTNPAAREWFKDKVKA LLNQGVDAIKTDFGERIPRDVVWYDGSPKLSMHNWYTQLYNQAVFEAIEETYGKGNACLY ARSATVGGQQQPVHWGGDCESTFNGMAQSLRAGLSLTSSGFGFWSHDIGGFEGAFPDPAV YKRWVAFGMLGSHSRLHGSTVYRVPWLFDEEDEKNGVALVPGQTAVDVVREFTKLKLELM PYVYQLGLQPHVNGTPVMLHVRGIPR >gi|316916874|gb|ADCN01000003.1| GENE 10 6800 - 7099 544 99 aa, chain - ## HITS:1 COG:no KEGG:BLD_0072 NR:ns ## KEGG: BLD_0072 # Name: not_defined # Def: ABC-type sugar transport system periplasmic component # Organism: B.longum_DJO10A # Pathway: not_defined # 1 99 1 99 99 179 100.0 3e-44 MCETGVKVEFEKKAFEQIRQNASQVLNSDDAPDVTEYNKGNATSGLLASQGLLTNLNDYV SEYGWDKIITGSLADTGKYDEQGMMGSGDWYGITTGAVK >gi|316916874|gb|ADCN01000003.1| GENE 11 7262 - 9412 1758 716 aa, chain - ## HITS:1 COG:VC0613 KEGG:ns NR:ns ## COG: VC0613 COG3525 # Protein_GI_number: 15640633 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Vibrio cholerae # 133 410 203 503 637 73 26.0 2e-12 MKGTAVPTFEYKADAATPCLTLIPAPVTLEYTHGTAMIGSLVTIEKRIPEYAVTEDADET WETLPIEQLSSELERYCGVAVRTRRVLTATDEADAGANAAEKARDAGVGAGAGAGAPAAM NGTVISLCVDARLAHDEYTLDVFASDTIAVRGGSESGLRYGMQTLRQMIRQTSRTLPCLH IQDKPAFAVRAYSLDVTRGRVPTMAFLTWFIDQLALYKYNQFQLYVEHAFAFGELSEAWR GTDPLTADDIMFLDEYCAHHGIELVPSLATFGHMYMNLRTREHRGLGEFPEDADRPFSFI ERMEHHTLNAANPKSHDFASRLIEEYAPLFRSRSFNIGGDETFDLGRGRSVQDSPGASRD ELYADFVKDLCSTLAHRGLQPMLWADIALENPHTMDLLPGDITMLNWMYEPDIDESKIQT IASQGRRQFVCPAVRAWSRFFPDYDGAWLNTYRMAVAGLKYGAEGMVVTDWGDYGHVNDP RLSVPGLCYGAQNAWNPIAIDACEMNHRISNLAYGDESGWLMDSLARIDSDGVSFPWDLA VQVLELEYGSGTGMLNTDVASYVERSCGGELMFDRALGCADARRRLLLRNHARLERRRDC DRALIDCGSAVVAVLDGSARGGLNPELLWVMLDGQRLFNRLGEELLVLAGGEDACGTKDV TGRALDTSRRARLAADLELWFERYRVQWLSIGRYAELARIAHVVWSFADILRRGAL >gi|316916874|gb|ADCN01000003.1| GENE 12 9508 - 10323 1015 271 aa, chain - ## HITS:1 COG:mll7152 KEGG:ns NR:ns ## COG: mll7152 COG0395 # Protein_GI_number: 13475955 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mesorhizobium loti # 48 271 6 262 263 135 30.0 8e-32 MKCVENPRAVSHGAAQSAPPRRRTNPGKIARRAGTTILALLFCVVWFFPVCWMIITAVKP RDEIMTTTPVFWLMHLSIVLSIIVAFFACAALTLYRFRGRKPIMVFVLAIQMTSGGIIPQ IIIYNQLGLLNKYSGLILAYIAMVLPFAIWNMRGFFLNIPKDIFESAAVEGANDWQILWK ITFPLAAPGIVSTSVFAFINAWNDYMIAYTFMKDQSKYTLPVWLSSFSTPTMGTDFGGQM AASVTFSLPVVVFFMLIQRNIMKGVTTGAVK >gi|316916874|gb|ADCN01000003.1| GENE 13 10923 - 11765 563 280 aa, chain + ## HITS:1 COG:no KEGG:BL0054 NR:ns ## KEGG: BL0054 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 280 27 306 306 576 100.0 1e-163 MSSFMHEDIVGRRRAERERCNDAARRSKGPLLVGYINAANYYGAPIPRHCTLSVDAVHAC VSSANKRRRIKGVVFHVFKGKLDIRKKDYEQFWIASPVMMWAQMAQYSTLEELAAIGASL MSRDKRRRMATRKDFDTYLEISPRFIGRNKCHEALPYMTENTDSPPENTLFGMLKDSGLG CPTANYRVNIGNSYVILDMAYPDCRVAFEYQGAYHADPAQMRIDAAKRNALQLLGWIVIL VTADDLRTADTRHRFIEMAHVVVSRQRNLADWNRSWAITS >gi|316916874|gb|ADCN01000003.1| GENE 14 11755 - 12006 120 83 aa, chain - ## HITS:1 COG:no KEGG:BAD_0852 NR:ns ## KEGG: BAD_0852 # Name: not_defined # Def: cation transporter # Organism: B.adolescentis # Pathway: not_defined # 1 52 242 293 341 63 53.0 2e-09 MAFKSGSLLVGESLDHSTRDLVVEAMERTVGVDRLINLQAIHMDEDAVPRCLGMNGRSTL SPISGGCLAVNNGIAHCRCDAKR >gi|316916874|gb|ADCN01000003.1| GENE 15 12039 - 13154 1461 371 aa, chain - ## HITS:1 COG:ML1080 KEGG:ns NR:ns ## COG: ML1080 COG0489 # Protein_GI_number: 15827530 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Mycobacterium leprae # 3 348 7 348 383 289 44.0 7e-78 MSDARQIEADIYERLSKVIDPELGRSVTDLGMIAAIEAAPASSDAGTYDVTVHVELTVPG CPLSETITSQINGAVSSYPGAQLLPHIEVGSMSRDKLADLVADLKAERKQNPFSKPGVKT RIFAIASGKGGVGKSSVTANLAATFAALGFDTAAIDADIYGFSLPRLFGVHTQPTNLNGM LMPVTAWGVKLISIGMFAGADRAILWRGPRLQRSLEQFLSDVWWGEPDVLLLDLAPGTGD MAISVAQALPNAELVVVTTPQPSASDIAVRSGLVALQVPMKVRGVVENMSYYEHKGEKLE IFGAGGGQRVSEQLTQALGYDVPLMAQLPLEPEVRETGEAGRPAVLDADGALRTDGIGQT FRGLAERLLAV >gi|316916874|gb|ADCN01000003.1| GENE 16 13330 - 16092 3082 920 aa, chain - ## HITS:1 COG:MT3094 KEGG:ns NR:ns ## COG: MT3094 COG0272 # Protein_GI_number: 15842572 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Mycobacterium tuberculosis CDC1551 # 64 699 3 564 679 477 45.0 1e-134 MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV GGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLVGPKEDVPDFVEIRGEVFMRW DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR GTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREDQLREFVMPEF CPSCGAKLSPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE ENRPDSVATYAPNITEVLVAPGEEPDPYEPVEGLELPAAQKPVLSNESGLFNLTAADLRD VRVWREAAIVEVHETVGANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA QGETAIESAETQGGTASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA AIENATIEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSL PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEE LGIPMLSETQFAQLLATGTI >gi|316916874|gb|ADCN01000003.1| GENE 17 16157 - 19780 3386 1207 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1425 NR:ns ## KEGG: BLJ_1425 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 1207 1 1207 1207 2140 98.0 0 MPKRTSDHGKHNRTPLLGGLKDSMNALAADLGLSKPKKHDTNPFGDALRETSERKGGIID ELTRHAVALSPVIKRRTFPELENVPEGLVLGWAQLPSTRGRGFSLGIFPDRDHFAQVAFA DTHGRVFVGTDPDMDVQDMQARFMFGKEKEVTLPDGERLGESDEPRSRSGFSRTDRGLGS ALHHGRGLGRGLGHGADGVKAITGGVVGRDDTGRMTWLASWLKAGNRYTLEQMRANLPPA MRHDLEYRDAITIAFFATYMLPQINGLLIGFGSGNIFRRLNREAPIGAIRRSVRDTLAAR AHGMRASGLEDHFADLMREAGALDTTPGLEAVHGAEPLHLYTSTYSSGYFFTWDKSLAFG QALKSLKIEGNLNRFAAVSAWLERNASLGRNPTEDTVTRAEAAQIDMKLIENPAIMALDP YDGEQERRAVLSLIDIAARTAGQIRSEFPDPRDVLTQQNVPDSGVTNAAGAESTESAEGA VERTDKSDTNTQAARPSYSPARSDEWVYRQTLSSLLRRLRLPYRFDVEFRSRLDSGEVAI GFTTAGTSMMPDSRYDTTRRTWRALSSAERASMSAAYNLRVGLMMAALSFGTSESVRQVS LHIDSIGLEEAIAEQDSAIEAMMSEALSAFEHLRSGDLGRVGSKADPKDGDFHGDPTRPI THEETFGQTASGDERGTAGGAGNGTGPSADATDQAAAESADADGAASIDSQFEDLMKGID IDEMAFGMPDDTGAGDDLGGIGGEGVGTDGADGAAGMDDDPMSVLRRNPTVRNMVTVTFT RDAFLKRLDTAGLDNPEETYRMFGAVMDVDGEGGLKPISADFDLADSRFSPTGSQEEPEL ADRQFSPATAHVLGAQNSAGLAIQRVDLLQHGVNEFHDIARNTSLGSVEKAQRAMQVIES ICDPELTDLASQVTSALIDGKDTPDFTFTLADDLDKERLRARDMLFSGQADQAIEAAEAA VAHLDQVYAAGHGVPRYFNSYAERVVYNRLFATLDERTVLIPDNLFYAHMELADVLSQIK GAEAAIPHLNRMVAYAPAYPLSHLKLAIQLARNEDWDSARAACLNALRVALDRDDAAFAY YRFAYAEWMLDRFDTAAAAYIMSDHIAPGAIGSLESELQELVSRADSQCIPVPESVEAAA HVLATHDLPVWPHIEVADIVRDAARVCVDEDMFVPARTLSVAVARMNDGEGDNIDIIQAQ FLRSLSA >gi|316916874|gb|ADCN01000003.1| GENE 18 19842 - 22139 1713 765 aa, chain + ## HITS:1 COG:no KEGG:BL0050 NR:ns ## KEGG: BL0050 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 765 1 765 765 1376 98.0 0 MHSIDHTRADRPMPSNHERHLPSRPDTRHRLRLVRLLIALLAAVAAIAAMECIVFNLPFW RTLGASTDTNAVHNTLGSGLTRRNDGMLTVTDPTKAYLELTADGTSDYLRIDTESSKVID KAREQAEAESKANDDKEVFKPLATIHVRADVDGITGKAQSMNPDAIRSHYVKAPGAGIVR IWIQEERGAIVPVTDARANVRVPFVINWMRVLAMALVLLMIAVWRPGSRLWRITLDPSST RQRLAFVGLLAIPTLLIGVSIIHELWYTSSLVFHVSGDYTYDFDQYGHVADALVAGRPWL DLPVPEQLAATEHPYDVATRAQLLANGASPLYWDYAYYDGHWYSYFGVLPAVLLFVPYRL LAGHNLPTSAAEYILVLLFIIFFSLLVLRVIHRVMPKTSVAAASLVVVSSLVSAQMGYLL YRTNFYQIPFAASLTLTSLGLWLWLGADTSRRPLRPSDRWQAGDAKPLSLPRLALGALCI AANFGCRPTFTLTALLAFPLFWPQIRALGTGLRTRRIKPLQALRAPLAVIIPAILVVTPL MAWNMVRFDSPFNFGNAYQFSISDMTRHTTPSADMPANIWYYLFLPLRFMDRFPWLAGSP APMPQWGYYEVMVGAIFTATPLTLMALALPLLRRLETHGMRPWLMSCLAVAAVLVVFDSR VGGLGWRYSADFGWLISLASIPGLLWLVNGREPSRSLAGANDAASGDGIARVTPWRWLMR WVVMLAVLWALGIAILSCFVQSRSDSMIANNPTLWHQVQSWFTLL >gi|316916874|gb|ADCN01000003.1| GENE 19 22274 - 22936 949 220 aa, chain + ## HITS:1 COG:no KEGG:BLD_0063 NR:ns ## KEGG: BLD_0063 # Name: not_defined # Def: arylsulfate sulfotransferase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 192 1 192 589 282 99.0 6e-75 MSTAVRSRVFKISAAAVTAAIAIGLCLFSQDDVSASIKERRVERLNAQIENVYTDEYQQM MDTEIADERDAKERTVDSIYTKVNPYGTNTTSMYVYFTTDQASTVSYTVSAEGYPDYTAN AITSDEAAAAYREAAAGDADGSGNVGGTSTASQTTTVSSNDIASTEHEFLVLGLIPKVKN TITLTITDTDGNLKAQYKMVLSSGYIYRVYQYGFRGFYFA >gi|316916874|gb|ADCN01000003.1| GENE 20 22993 - 23778 1089 261 aa, chain - ## HITS:1 COG:DR2469 KEGG:ns NR:ns ## COG: DR2469 COG1122 # Protein_GI_number: 15807456 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Deinococcus radiodurans # 20 250 4 221 226 99 33.0 9e-21 MGFLFRPKELPRPASLTFTLDQAGHTYDDGHVGLAPTDITISELRVAVIGLNGAGKSTLL GLLDGSLKANAGTVTIAGGEERLDPAVKKDAKRIDNLVGKVRREEIPNSFYQAANISEAV SEALKKHKVPESERHARIGNLFAHFDLAQVSKAKASELDSEKRHLLAIAAALSFEPSAIV ADEPSKGLDEIGAAHVAKALFSYNKQVIFATHDTDMIRRPEYAIDRVLVLDEHAVAFDGA PAEAVAFYEDLIRRKYEAAKR >gi|316916874|gb|ADCN01000003.1| GENE 21 23826 - 25085 974 419 aa, chain - ## HITS:1 COG:SPy1779 KEGG:ns NR:ns ## COG: SPy1779 COG0436 # Protein_GI_number: 15675619 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Streptococcus pyogenes M1 GAS # 108 404 93 389 404 105 26.0 2e-22 MHFSSRVDISAPNPIAAAEAAAKANGIALSKLNDSNPTRHGLAPELVPSVYTADPRGPRA AREALAAFLNTAKAVDASSPQSTSPAAGEGGNERHAAFNNANTAIEGVDPDALYLLSSTS EAYSWLIKLLCDAGDAVLAPKPGYPLIESIARLECVDTVEYQLQFDGSWFIDIAELERLL SEPGGERIRALVLINPNNPTGSYVKPTERARIVTLCREHGIALIADEVFFDYSLEPFPGN ARLAGERGVLTFALDGFSKMLAAPHAKVGWIQVSGPAEDVAEAQRRLDVIADDYLPMSDI IAERIPALLNAAPAQTRRVGERVRNNLAKLHELLDADPNGLVSVLRAEGGWNVLLRVPSV IDENELVLRLIDEHKLTGQPGYFFDMTSNGYLAVSLLPEPDEFERGIRAVLNTVAALLR >gi|316916874|gb|ADCN01000003.1| GENE 22 25362 - 26129 1225 255 aa, chain - ## HITS:1 COG:Cgl1864 KEGG:ns NR:ns ## COG: Cgl1864 COG1940 # Protein_GI_number: 19553114 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Corynebacterium glutamicum # 4 247 2 241 250 233 50.0 2e-61 MIETAQAFGVDIGGSGIKAAPVDLTKGDFAEPRLKILTPEVSTPQAVAKIVKQQLDHFEV PESAPVGIAFPAPIKPGQKLDFMANLDQSWIGVDVTEVFSEACGRPVVVVNDADAAGLAE VQFGAAKGQDGLVIATTLGTGIGTALIYNGVLIPNTELGHIILSAKHLDAEKYASSAIRE NEELGYKKWAKRLTKYYGLMEKYFNPDLFTVGGGVSRQSEKFLPYVDIKTPIVPAKLRNQ AGIVGAAYYASTKQQ >gi|316916874|gb|ADCN01000003.1| GENE 23 26095 - 26319 164 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTPKACAVSIIVDLPFHTFSSVRKVAPSLTRITLNTKPLHTNCANVCIVAGHYVPYSYR FSSLTMGNACDFAY >gi|316916874|gb|ADCN01000003.1| GENE 24 26375 - 27160 884 261 aa, chain + ## HITS:1 COG:CAC0748 KEGG:ns NR:ns ## COG: CAC0748 COG0778 # Protein_GI_number: 15894035 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 7 258 3 237 241 155 37.0 8e-38 MAEHTQLIDAINIRTAVRAYDDEPIDDDTARQLEMALQPINLLGDLNIQLVRDQPKVFAE ANASGHLTNAANYLAIVGPANDEEAKERAGFYAERMVLTATLRGLGTLWVAGSWDKAEAA KHCRVTSGQELYLGVVIGHPKNHLDYQAKSYEELCEAQRTHRATKTYEQFTATMSDEGRE AAPDWFKSGVEAAMKAPSAMNRQPITFSYNPADDTAAAHIDQSAEDEHHAFNDMGIAKLH FQIGAGQGQWAWGDGGLFIHK >gi|316916874|gb|ADCN01000003.1| GENE 25 27202 - 28224 1565 340 aa, chain - ## HITS:1 COG:MTH343 KEGG:ns NR:ns ## COG: MTH343 COG1216 # Protein_GI_number: 15678371 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Methanothermobacter thermautotrophicus # 16 245 2 233 328 86 28.0 7e-17 MGAMAEVKKPNNTIDKLALIVTTYKRQQLLETLFDSILALEQAPWRIVIVDNEQSDQTAD MVAAFAGKVTGQWGTTVADQSGNEERVVYAPQIENLGGAGGFSAGVAKAYELGAAWFWVM DDDVAVLPDAIAKLSKWTDKHEVIQGSRFDYDGGPFYWQYDFIVPLGIPNPIAPAAFGPA GYRVMDTLCFEGGLFNRRVVTEIGLPDPRFFIYWDDTMYGYRASKVTNPIVVPDVILRRT REIGNWDIAGVRQLNSTSDMNRYHIMRNRGYMARYFMTYGDFRPLVFGLGTVLTAAKEVI RLVMVDREHLKTGLVQIAKGWWDSRKLMHDPTWKLMPSLK >gi|316916874|gb|ADCN01000003.1| GENE 26 28467 - 29120 1049 217 aa, chain + ## HITS:1 COG:TM1455 KEGG:ns NR:ns ## COG: TM1455 COG3601 # Protein_GI_number: 15644204 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Thermotoga maritima # 48 213 3 171 183 82 32.0 7e-16 MSVSSRIRMQVVRSVAPEAEGSASTSTASTSAKLGSHTTGVADSGRWSTRRIAMYALFVA LAMVTSFIEFPITPVTWLKYDPSGIVCLIAGFAYGPAAAAIVSVLGFVPHMFANPWGSLM AVLVALFLSVPAAFIYRKIRTRKGAAIGILVGAVLAIVVALVSNLIVTPIYAHMTYQAVA AMILPILLPFNVAKMAIHAVITFLIYKPISNLLSKQQ >gi|316916874|gb|ADCN01000003.1| GENE 27 29251 - 31683 2152 810 aa, chain + ## HITS:1 COG:MA1418 KEGG:ns NR:ns ## COG: MA1418 COG1122 # Protein_GI_number: 20090278 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanosarcina acetivorans str.C2A # 37 534 7 467 528 224 30.0 7e-58 MTVAPHSFDADEFHDSAEPHASAEPASPAAVLKDIRFSYDRGTSWALDGVSLTVHAGERL CLVGPNGSGKSTLARLIAGLTAPDGGEVTLLGQRVYAAGPNADAYRAARHGIGMVFQNPE DQLVTTVLEDDVAFGPENLGLERELIGERIVDSLQAVGLANLRQSDPTRMSGGQQQRASI AGMLAMNPAMLVLDEPTAMLDESARAEVMRILDDLQARGTTIVHVTHHPDETVHADRIVH MEAGRIIGITAAVDNRSPLAEAVSQSETEGSIGTEAAPSRPTNDSPRQREREDGSELPLL SDGIGDMTNPIIRVSHLTYRYPSAKRAVIDDLSFTIARGETVALMGVNGSGKSTLVRMLC ALTAPTAGSIEVAGVPVASTGKRGRNVRPKSANRKQLAQLRRHVGYVMQHPEHQLFADTV AEDVAYGPRNQGLGETEVADRVRESLELLHIGHLADRSPFDLSGGQQRLAAIAGVLACNP DVLIMDEPTASLDAQAKKRIHELLRTLKSRGVTVLIITHDREEAEQIADRVVRMPIAAPA SGGPVTATVTEPAVSSNGPAHSVIHRLDPRVKMVGFLAAMFTMFAVNTPTQLALGIAITL AVIAAARLNPLRVLESIHPILILLVLMGVVNLFVVRTGTPVVALGPLSITDQGVTIAVLY ACRFALVIILGAVFLTTTTPTAMTDAFATLISPLNRLGIHAQEIALVMSLALRFIPTLTD ETRAIVDAQSARGGSIETGSLAQRIKAMSAIIVPIFAGTLRHADNLSLALDARCYEEGIR RTHWRALTIAARDLIFAAAVIIYIAAIIAL >gi|316916874|gb|ADCN01000003.1| GENE 28 31755 - 32060 555 101 aa, chain + ## HITS:1 COG:CAC1261 KEGG:ns NR:ns ## COG: CAC1261 COG1534 # Protein_GI_number: 15894543 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted RNA-binding protein containing KH domain, possibly ribosomal protein # Organism: Clostridium acetobutylicum # 3 90 1 88 96 74 43.0 5e-14 MALTKKQIKQLRAMANSLKPLFYVGKNDLTESAVNQADETIEKHELIKCAVQDGSGLTAK EAAAELAEQLNAEVVQSIGNRFVLFRRSRRDDVEHIRLVRE >gi|316916874|gb|ADCN01000003.1| GENE 29 32159 - 32494 307 111 aa, chain - ## HITS:1 COG:no KEGG:BL0041 NR:ns ## KEGG: BL0041 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 111 11 121 121 143 100.0 2e-33 MTIAAAVMVAVTPGMTPVGEPPILGIAAFALFMALINASIKPIVHLIALPFAILSLGLVT LIINWLFMRLASWLAVSLFGVGVFVHGFWWSVLGSLVLTIVAGIVGSILDQ >gi|316916874|gb|ADCN01000003.1| GENE 30 32574 - 33251 802 225 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1435 NR:ns ## KEGG: BLJ_1435 # Name: not_defined # Def: TM2 domain-containing protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 225 2 231 231 237 94.0 3e-61 MLCRNGKKVLPFPIERGLTRMTDNQQQPYGSDSVPQPAQPAQPAQPSYGQDAAQQPQGYG APQPAAYAQPAAGSYGQQQPQYGQPAGAYAQPQYGQPQYGQPAQPAAGYGQQPGYGQAYQ QPNAYAQPQYTAAPYAAAPVGQSSKSKLAAGLLGIFLGGLGVHNFYLGNTGKAVAQLLLT LVGWILLGLGPIAAAIWGFVEGIIILCSKPGSPWHKDANGYELSD >gi|316916874|gb|ADCN01000003.1| GENE 31 33677 - 34096 742 139 aa, chain + ## HITS:1 COG:no KEGG:BLD_0051 NR:ns ## KEGG: BLD_0051 # Name: not_defined # Def: membrane-anchored glycerophosphoryl diester phosphodiesterase-like protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 139 1 139 139 275 100.0 4e-73 MAEGKVIIVNPDMFGKDPDSKTTKANEVAKSFGLSDAALAEVEDFKAQLTKHNAWDLPFM GYVNEDGYGYAYVPGAAVVYDPYWDAHQAFLALPKDVQTAFAIRMLFTHRPVDRYGASMF LHYQRGFNVKFEGIGANQY >gi|316916874|gb|ADCN01000003.1| GENE 32 34221 - 35207 737 328 aa, chain - ## HITS:1 COG:L51032 KEGG:ns NR:ns ## COG: L51032 COG0111 # Protein_GI_number: 15673970 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Lactococcus lactis # 72 326 59 313 325 197 37.0 2e-50 MGIENTHKLIVNCLPLNEGERRAFAKAARDVPQEFVGDEAHRGDMVWSAAVPEELRSRAT AVIGNFPVSQASQYTRLEWLQTFSAGVDAYICPGVLPRGTMVTNASGAYGQSVSEHMFAT MWALMKNLNRYASNQRDHQWQDEGPVLSPEGGIALIIGVGDIGSHFAQLAQSVGMRTFGV RRHADVPAKGIEKMYGFERLETLLPLADVVAMAVPRSPQTHHLLNADRLGRLKSTAIVIN AGRGDAIDPEALADALHNGRLHGAGLDVTEPEPLPAESPLWDEPHCLITPHVAGGNHLEK TSEHIIRIALTNVSRYAKQQELLNLVRY >gi|316916874|gb|ADCN01000003.1| GENE 33 35507 - 36964 1739 485 aa, chain + ## HITS:1 COG:L184818 KEGG:ns NR:ns ## COG: L184818 COG0477 # Protein_GI_number: 15673330 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 15 439 9 416 454 213 36.0 6e-55 MPEQHIDNEKIPTRLIVAIVAVGSLAFIGILTETVMTVLFPALMREFHVDTATVQWITTI YLLAVAATMPISSFLKRRFALKTIFLAAVILAIVGSLIMIVAQAFPLLIVARIIQGIGSG VATPLMINIILEQSPRSKIGRLMGVGSLVITVAPAIGPTVGGAVTTVLPWRAIFVIAIPL VLIAACIGMKCIEQKTPTEAAYLDPIQLGSIVVALVGLVLALNQGGVAISAAVSGKSATR SGIIAIVSLIAGLALLIVFAMSSKRAFSPLLRLGILKDPAVLLHACAYLLLPLVAIGYGY VITNVAQLSLGTTAFVAGSLVLPGALVGAVCAPLGGWFYDKFGAVKPILIPIGIAILGPV LMLVFSMQLTPLLLAGFYFIFGLFYSIGNANVMTSGLSEVSPEFKPDGNAIFNTCLQFGG AAGTALFSTILSVAQAGAGEEGTAEFAHATAVGGTWTFATMTVICLIGWCCLATAFRIRA ARKRA >gi|316916874|gb|ADCN01000003.1| GENE 34 37190 - 38212 1466 340 aa, chain - ## HITS:1 COG:YPO3905 KEGG:ns NR:ns ## COG: YPO3905 COG1172 # Protein_GI_number: 16124037 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Yersinia pestis # 20 334 3 313 330 170 37.0 3e-42 MTTATANKVKAPKKGFKLDRQMIPTLAAVVIFILMIIMGQALFGTYIRLGFISSLFIDHA YLIILAVAMTLPILTGGIDLSVGAIVAITAVVGLKLANAGVPAFLVMIIMLLIGAVFGLL AGTLIEEFNMQPFIATLSTMFLARGLASIISTDSLTFPQGNDFSFISNVIKIIDNPKISN DLSFNVGVIIALVVVVFGYVFLHHTRTGRTIYAIGGSRSSAELMGLPVKRTQYIIYLTSA TLAALASIVYTANIGSAKNTVGVGWELDAVASVVIGGTIITGGFGYVLGSVLGSLVRSIL DPLTSDFGVPAEWTTIVIGLMILVFVVLQRAVMAVGGDKK >gi|316916874|gb|ADCN01000003.1| GENE 35 38209 - 39279 1480 356 aa, chain - ## HITS:1 COG:AGl3181 KEGG:ns NR:ns ## COG: AGl3181 COG1172 # Protein_GI_number: 15891708 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 356 12 338 348 177 40.0 2e-44 MAEKAKAEGNNFVKKLLSSNLTWSIVAFILLVIICTIFQHDFLALSWNSNTGGLAGPLIT MLQESARYLMIATGMTLVISTAGIDLSVGSVMAVAGAAAMQTLSNGMNVWLSILIALAVG LAIGCVNGALVSFLGLQPFITTLIMMLAGRGMAKVITSGENTDASAVAGNEPLKWFANGF ILGIPANFVIAVIIVILVGLLCRKTAMGMMIEAVGINQEASRMTGIKPKKILFLVYAISG FLAAIAGLFATASVMRVDVVKTGQDLEMYAILAVVIGGTSLLGGKFSLAGSAVGAVIIAM IRKTIITLGVNAEATPAFFAVVVIVICVMQAPKIHNLSANMKRKRALKAQAKAVAA >gi|316916874|gb|ADCN01000003.1| GENE 36 39281 - 40795 2312 504 aa, chain - ## HITS:1 COG:SMb21588 KEGG:ns NR:ns ## COG: SMb21588 COG1129 # Protein_GI_number: 16264776 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Sinorhizobium meliloti # 8 504 18 504 505 466 49.0 1e-131 MKGITIEFPGVKALDGVDLTLYPGEVHALMGENGAGKSTMIKALTGVYKINAGSIMVDGK PQQFNGTLDAQNAGIATVYQEVNLCTNLSVGENVMLGHEKRGPFGIDWKKTHEAAKKYLA QMGLESIDPHTPLSSISIAMQQLVAIARAMVINAKVLILDEPTSSLDANEVRDLFAIMRK VRDSGVAILFVSHFLDQIYEITDRLTILRNGQFIKEVMTKDTPRDELIGMMIGKSAAELS QIGAKKARREITPGEKPIVDVKGLGKKGTINPVDVDIYKGEVVGFAGLLGSGRTELGRLL YGADKPDSGTYTLNGKKVNISDPYTALKNKIAYSTENRRDEGIIGDLTVRQNILIALQAT RGMFKPIPKKEADAIVDKYMKELNVRPADPDRPVKNLSGGNQQKVLIGRWLATHPELLIL DEPTRGIDIGAKAEIQQVVLDLASQGMGVVFISSELEEVVRLSDDIEVLKDRHKIAEIEN DDTVSQATIVETIANTNVNTGKEA >gi|316916874|gb|ADCN01000003.1| GENE 37 40963 - 41946 1674 327 aa, chain - ## HITS:1 COG:ytfQ KEGG:ns NR:ns ## COG: ytfQ COG1879 # Protein_GI_number: 16132049 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 38 321 25 311 318 123 32.0 5e-28 MKNWKKAIALVASAAALVSVAACGSSNAGGSSDSGKKTVGFVAVGPEGGFRTANEKDIQK AFEDAGFDLTYSPTQNNDQQKQIQAFNKFVNDEVDAIILSSTEDSGWDDSLKKAAEAEIP VFTVDRNVDVKDAEAKKAIVAHIGPSNVWCGEQAAEFVNKNFPDGANGFILEGPAGLSVV KDRGTGWGNKVASNVKVLESQSANWSTDEAKTVTAGLLDKYKSDNPQFIFAQNDEMGLGA AQAVDAAGLKGKVKIITIDGTKNALQALVDGDLSYVIEYNPIFGKETAQAVKDYLDGKTV EKDIEIESKTFDAASAKEALDNNTRAY >gi|316916874|gb|ADCN01000003.1| GENE 38 42262 - 43932 1104 556 aa, chain - ## HITS:1 COG:no KEGG:BL0032 NR:ns ## KEGG: BL0032 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 556 21 576 576 1038 99.0 0 MTACSSPFGLPISGSVQTLAPVEQQTQRVYTNPQGPADDAQPETIVKGFYDAMPAGVQSD GYRVAREFLTGSASAGWNGDSAALVYSGTPDFRRRANTISAPQGAESSLIVEVELQVVGS LDSHGVYTPSNSTQTRRLPYTLMKKSGQWRISSLESGVVISTADFEQVFRQVSVYQVSTS GKQLIPDIRWLSWRNWRTQAVGEVLSDAPSWLEGVLRGAGLSTIKLAVDSVPVKNNVVEI HLNSGINALNEEERGLLVHRIRLTMGDGNAEYALKITGDGVDYSDADANVKLTTEQPTAG VYTLTGGHIVSLASSSPLRVGEAPGYDDARGFVFSSSGGAVLRADGVVECLKSDGASCGV MFSGESMRSITEGLDGEVWAVSENGRELHVSDGGKETDLKLDWLGAADSIVALAVSPEGC RLALAVEGEDTNGVMMTGVARNGDKTLSGLSKAATQVSVLRHVTMLTFYNDLNLVYATTP PEGNSEQQEAWRQMAPGPANAQRLPNGTITSMASGQISLSRRLAIVDDLGIVCSVSGSLD GSWTIADSQVTALGAQ >gi|316916874|gb|ADCN01000003.1| GENE 39 43989 - 45686 1297 565 aa, chain - ## HITS:1 COG:MT3343 KEGG:ns NR:ns ## COG: MT3343 COG0642 # Protein_GI_number: 15842834 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 21 510 35 516 567 259 36.0 1e-68 MNLRPRFSLKRLLRHGRAEVRCSLQARTVALTVILTLAVAIVFSGVSMVLVRASLLTQIT SQSRADYSNMVQQAQTSLDAADVSATVQIQQLVNDLASSLQSEGPSNLIGVYLWSRDTNS RAIIPVSTEPSYQSLISDDIRSSVASDLDDSVFYQPVEIPGDSGMPGSGTPAAVLGTVLD FGVAGNLEFFAIYSYTFQQQSLTQIQLSLVVICALLSIVVGVVIWLVIRGIVRPIERVAA ASETLASGNLDMRVTVDRKDELGVLQQSFNTMADALNQKIDELEEASVFQKRFVSDVSHE LRTPVTTMRMASDLLEMKKDGFDPSTKRTVELLAGQISRFQDMLADLLEISRYDAGYAAL DLVETDLCEPIETAVDQVDGIAQAKRVPIHTYLPNVQVLTRIDSRRVIRIVRNLLANAVD FAEDRPIEVRVAANRKAVAISVRDYGVGIDEDKVAHVFDRFWRGDLSRSRVTGGTGLGLA IAMTDALLHHGSIRVRSAVGEGTWFLVLLPRDPDQGEVADAELPVNFASETPDDLRVTGG FGVATSQVTHDYHEVRRDTMMGRPL >gi|316916874|gb|ADCN01000003.1| GENE 40 45683 - 46405 911 240 aa, chain - ## HITS:1 COG:Cgl0731 KEGG:ns NR:ns ## COG: Cgl0731 COG0745 # Protein_GI_number: 19551981 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Corynebacterium glutamicum # 4 234 5 221 226 234 54.0 1e-61 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG TGVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAK PAAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG EAISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ >gi|316916874|gb|ADCN01000003.1| GENE 41 46488 - 46904 187 138 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 119 201 312 317 76 42 2e-13 TRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYF ADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEA FADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 12:33:09 2011 Seq name: gi|316916861|gb|ADCN01000004.1| Bifidobacterium sp. 12_1_47BFAA cont1.4, whole genome shotgun sequence Length of sequence - 14306 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 5, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 490 -196 ## Blon_0449 integrase, catalytic region 2 1 Op 2 . - CDS 491 - 1870 1628 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 3 1 Op 3 . - CDS 1953 - 4520 3527 ## COG4581 Superfamily II RNA helicase 4 2 Op 1 . - CDS 4654 - 5727 959 ## COG2326 Uncharacterized conserved protein 5 2 Op 2 . - CDS 5793 - 6101 382 ## BLJ_1448 hypothetical protein 6 2 Op 3 . - CDS 6025 - 6306 95 ## gi|239620730|ref|ZP_04663761.1| predicted protein 7 3 Op 1 . - CDS 6657 - 8189 1899 ## COG0671 Membrane-associated phospholipid phosphatase 8 3 Op 2 17/0.000 - CDS 8287 - 9387 1494 ## COG0765 ABC-type amino acid transport system, permease component 9 3 Op 3 31/0.000 - CDS 9393 - 10070 1096 ## COG0765 ABC-type amino acid transport system, permease component 10 3 Op 4 16/0.000 - CDS 10070 - 10909 1375 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 11 3 Op 5 . - CDS 10941 - 11783 562 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 4 Tu 1 . + CDS 12338 - 13291 215 ## BLJ_1455 hypothetical protein + Term 13395 - 13434 6.1 13 5 Tu 1 . + CDS 13609 - 14292 687 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316916861|gb|ADCN01000004.1| GENE 1 1 - 490 -196 163 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 23 91 1 69 358 111 88.0 1e-23 MKVQHPLDWKLPRKPVRRDVAPMGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPS SISREIKRNTWFPSNENESYRPYRPKKTEGGAMDRPLLHRRARAAQGRPQEIQATKSPTG CRTTACGRRWPNGWAAAGRRCSSAAGCASCGRTMRSCACARRP >gi|316916861|gb|ADCN01000004.1| GENE 2 491 - 1870 1628 459 aa, chain - ## HITS:1 COG:ML0510 KEGG:ns NR:ns ## COG: ML0510 COG2256 # Protein_GI_number: 15827173 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Mycobacterium leprae # 19 453 52 470 473 411 54.0 1e-114 MSENDLFGAADAPESMTRPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAP SSVILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETV LFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKPLLSRSVVVKLESLEPDQ LTELVQRALTDDRGLRDEVKATDEAIADIVRMAGGDARKSLTILEAAAGAVTGDEARKKG ARRPIITSEIVATVMDTATVRYDKDGDDHYDVISAFIKSMRGSDPDAAIHYLARMLKAGE DPRFIARRIMIAASEEVGMAAPQILQVTVAAAQAVALVGMPEARIILAEATIAVATAPKS NASYNAINQALADVDTGKIGAVPLYLRNAPTKLMKEWGNHEGYKYAHDWPGAVAPQEYMP EELRGTEYYHPNDRGYEHEVSQRLAKIRPILHGGEPPVV >gi|316916861|gb|ADCN01000004.1| GENE 3 1953 - 4520 3527 855 aa, chain - ## HITS:1 COG:Cgl1878 KEGG:ns NR:ns ## COG: Cgl1878 COG4581 # Protein_GI_number: 19553128 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Corynebacterium glutamicum # 25 848 20 842 850 778 48.0 0 MTDEKEYGSLGRLAPEWDGDGRERNLTADDIYERFFGWVEDVKGIEPWPHQEEAIMDLLA GDHVILNTPTGSGKSLVALGMHFAALCTGRRSYYTAPIKALVSEKFFDLVEVFGRDNVGM ITGDSHINADAPIICCTAEILANQALREGTHADVGLVAMDEFHYYGDPERGWAWQVPLLT LPQTQFLLMSATLGNVDAIADKLSDLNDTPDVDVIADAPRPVPLSYEYTLDPMEKTVELA FRNGETPIYVVHFSQDAALETAQALASTGVSSKEQRQAIAEAIKGVKFTTAFGKILQRLL RTGVGIHHAGMLPRYRRLVEQLAQQGLLPVICGTDTLGVGINVPIHSVVLTALTKFDGTK MRRLRAREFHQIAGRAGRMGFDTEGLVIAEAPEYEIENQKAIAKAGGDPKKLKKVKRKKA PEGFVTWNQSTFDKLIDAEPETLVPHLKITHSMVLNEVAQGGDARARIDDLIDDSAQTPD QKEHLHQRADEIFQTLFDTEVIETEDRKDGGKDYYMTLDMPDDFALDQPLSPFLLAALEL LDPESDTYALDVISMAEATLEDPKQVLRAQERQARDKAMADMKADGLDYDERMDKLQEIT YPKPLEDMLESAFDQYRHDVPWANDYWLSPKSVVRDMVETASDFTGYITRYNIARSEGTL LRYLSDAYRTLARTVPPEKRDEQLEDIISWLRVLVRSIDSSLVDEWENAGDSADQSEAAA SLAAPGKKNAVVEDRRGLIVLIRNAMFRRVQLMDLDQPDKLGALDKDWGYGVHEWEDVLD DYYDEHEYVGIGAEARSPELFMLDDKHENDEHTWKVRQIIDDSDGDHDWAIEGIVDLDAT QDTGEVVFHDYKVSN >gi|316916861|gb|ADCN01000004.1| GENE 4 4654 - 5727 959 357 aa, chain - ## HITS:1 COG:all2088 KEGG:ns NR:ns ## COG: all2088 COG2326 # Protein_GI_number: 17229580 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 102 341 19 268 289 207 40.0 3e-53 MAKDDDRTNKPEEAGKWGTAGKSSGKNNKNGKGKEYKTDRRIDKVLQLAADRIDTIDSSA SVPERLARAAKSSELLSAVWSLPPAQRLMFHHGMQVTDVEGDSTPGFDGNKEDAEKFISI SSSEIARYQRLMYANGVKGSTRRLLIVLQGMDASGKGGIVRHVFSQGDPMGIHYHGFGKP AAEELDHDFLWRVKRELPKPGWIAVFDRSHYEDVVMPHVYGTYPEDVWRARYDQINDFER ELAASGCAILKIFLVVSQEEQKKHFLGRLDDPTKFWKFDISDLEARDRWDEYMFAWQEVF EKTSTAAAPWYLVPADNRWYSRAVVSELLRTTLKNMNMTWPPLEPEVDPDEVRRRLA >gi|316916861|gb|ADCN01000004.1| GENE 5 5793 - 6101 382 102 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1448 NR:ns ## KEGG: BLJ_1448 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 9 102 192 285 285 196 96.0 2e-49 MPCSIFRVYSTYTAQLSSKRKGMEAEGKTWNYHDILAQFITMHNKKSNVLLIWSGDWPTY SSNSDKYYVILAGEGFDSTDEAWNWCKANNYGPNDCMPIDLQ >gi|316916861|gb|ADCN01000004.1| GENE 6 6025 - 6306 95 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|239620730|ref|ZP_04663761.1| ## NR: gi|239620730|ref|ZP_04663761.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 93 111 203 203 160 98.0 2e-38 MAYIDPDKAKPAKTCDAAPDMKVSSIKSDNLIVTILATSNCDDKNASTKFNDSATRLTLQ DSDDNVVADAVFDFSGLFHVYRAVVQQAQGHGS >gi|316916861|gb|ADCN01000004.1| GENE 7 6657 - 8189 1899 510 aa, chain - ## HITS:1 COG:STM3595_1 KEGG:ns NR:ns ## COG: STM3595_1 COG0671 # Protein_GI_number: 16766881 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Salmonella typhimurium LT2 # 74 350 117 352 355 94 30.0 4e-19 MKMFRHLSSVFAIATIAPLALAATLAAMPAIAQADQLPNPDWVALLYDYEKNYWQAPTDA GHGGKVLHADTMKLDEDLAVAINHKAAENLDKDGLNAQRKRALVDSDLQAEETMPDALGP VLGKYMSEGLKSGKLNAVADIFSFNVASTYASKRAAMHPRPYLNRAESSYGGTNDLAGLP ATLDIKQSPSWLEHVPGYSNLQKNSSYPSGHTTGAYSWGIALAGMIPELAPQIMARTSEA GNNRIVLGVHYPLDIMGGRIGASAQNGQYWHNEFASSIVPASRQLRDYLVSRCAADGHGT TLAACIANTKASGSGGYTNDFLDPVATEPVADQASAVRVYTARLTYTFPQDTAQSGADFV APRGAADVLRLAYPELHADQRNAILKATALDSGYPLWQSSDGWQRINWAKALCARVTLDK HGDVAKVETADQVALAGPSVVNAQYIDAGNHPASDSLAGENSAIAAGPDLATLHAVQRPS LISVAIGTAVIAIVGGIRTVRRKSKNQLQQ >gi|316916861|gb|ADCN01000004.1| GENE 8 8287 - 9387 1494 366 aa, chain - ## HITS:1 COG:Cgl1908 KEGG:ns NR:ns ## COG: Cgl1908 COG0765 # Protein_GI_number: 19553158 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 1 295 1 300 315 190 38.0 3e-48 MADTSNSVLFDAPGPKGRRTIRIVNWIAGILFAVVLVFILMRLHNPPDGENQLSWELWKP AVEREAWTDFYLPGLWMTIKATIVAVVGAVVFGLVFGVGRLLPNPLVRGVSAVIVEFCRA VPVLLLMIFFWRWFAFAGLPSPSYWAVVLALVLYNGSVVAELVRSGVGNLPGGQREASLA LGLTETQSLMEIEVPQAVYAMLPAAVTQLVVVLKDTALGSIIMYTDLLQESRRLGSMYFN ILQTLVMAAVIYFIACWLLSRLAEWLPSRMQQRTAAPTEAEPVAPIAAGDPSNVNQIAVA KELEELPLGGTPRKYHVHHRGTNASIRNWRRTRYEQGYDATQPESQVDPETGEFPAFRKP EDKPEA >gi|316916861|gb|ADCN01000004.1| GENE 9 9393 - 10070 1096 225 aa, chain - ## HITS:1 COG:Cgl1907 KEGG:ns NR:ns ## COG: Cgl1907 COG0765 # Protein_GI_number: 19553157 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 13 225 12 228 228 160 47.0 1e-39 MSGFLELFSQYDVLGAFLVNIELTLWSALFSLILGVILVVMRISPISSLRAVAGAYVELF KNLPLTIIMVFMVLGAYAQLKLSFSDTFTTNFFWLAVTGLSLYTAAFVCESLRSGINTVP IGQAEAARALGLGFMQSATEIILPQAFRGSVAPLGNTLIALLKNSTVAAAASVATETSSL MSEMIEFRPDVIIQIFLIFALGYVILIIPIGMLTTYLSNKLAVRR >gi|316916861|gb|ADCN01000004.1| GENE 10 10070 - 10909 1375 279 aa, chain - ## HITS:1 COG:Cgl1906 KEGG:ns NR:ns ## COG: Cgl1906 COG0834 # Protein_GI_number: 19553156 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 8 256 4 273 295 195 44.0 7e-50 MTFTNTFKRKACRVIAALAAVACTMSLAACGADETGKIRIGIKFDQPGLGFKKSGTYVGF DVDVAKYVAKKLGYSEDQIIWKEAPSKQREAMIQNGDVDMILATYSITDERKKAVSFAGP YFVAGQDLLVRKDDNSINGPEDLNGKRLCSVTGSTSAATVKEKFASEVQLMEQPGYAECA TALFSGIVDAVTTDDIILAGLASASRGKLKVVGKPFTQEYYGVGIKKGDTQLATKINNAI VDMIQDGSWENAISDNTKGTNYTPDVRYNPPIPDEGEEA >gi|316916861|gb|ADCN01000004.1| GENE 11 10941 - 11783 562 280 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 39 277 1 242 245 221 45 3e-57 MSETNNETAVRSRATSTTSPSKAKLTPLVPGKEDPNRPLVELTHVEKHFGALHVLKDINL TVAKGEVLVVVGPSGSGKSTMCRTINRLETIDSGDIRIDGKPLPQEGKELANLRAEVGMV FQSFNLFANKTILENVTLALIKVRHMDKKEAEQLAMDLLARVGVDSQASKMPSQLSGGQQ QRVAIARALAMRPKVMLFDEPTSALDPEMVNEVLDVMVELAHEGMTMICVTHEMGFARKA ADRIVFMSDGQILEENTPDEFFEHPQTDRAKDFLSKILTH >gi|316916861|gb|ADCN01000004.1| GENE 12 12338 - 13291 215 317 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1455 NR:ns ## KEGG: BLJ_1455 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 317 1 317 317 647 100.0 0 MNGYSEVPHNGEINNYLRKDLDAKATAKNTACWNLLGKVRTKRTLCFSLYTALELCGVEL PRHSTLPQKDFYVTVRSKGTRSSLDNVDYRIWNAKFNSIAFSNGVTCMHPMDAWIQFAQY LNLTELVVLAEALIRRYGYAIEQFTQRLTAFHRVIGRARCEAALKLVKPSDSVQETRTRL ALMLFGLPIPQTQYGITDSENGYTYTVDMAYPQYKVAIEYDGDHHRRFRKQYVRDQQKRR RLRQLGWTVIEVFADDLWNTAKQRAFAQEVATAMQIPLPGRPQPSCRVLIDGSLTINARK GEYRRRKQAKHNKASQH >gi|316916861|gb|ADCN01000004.1| GENE 13 13609 - 14292 687 227 aa, chain + ## HITS:1 COG:MT3281 KEGG:ns NR:ns ## COG: MT3281 COG2826 # Protein_GI_number: 15842771 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Mycobacterium tuberculosis CDC1551 # 64 225 2 168 344 89 42.0 6e-18 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQIADRLRLGDSIRAIARLLGRDPGTVSREVERNRNPESGGYEP YRAQQKAADRLKRPKPRKAAEGTRLWDEIAAGLRRHWSPEQIANRLRLDFPDNGDMHASV ETIYQAIYLQARGELKQELKRAMRQGRTARRPQGGQGRKPVSANPWP Prediction of potential genes in microbial genomes Time: Fri May 13 12:33:42 2011 Seq name: gi|316916809|gb|ADCN01000005.1| Bifidobacterium sp. 12_1_47BFAA cont1.5, whole genome shotgun sequence Length of sequence - 61809 bp Number of predicted genes - 55, with homology - 50 Number of transcription units - 29, operones - 10 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 40 - 354 453 ## COG2826 Transposase and inactivated derivatives, IS30 family 2 2 Tu 1 . + CDS 457 - 687 163 ## - Term 541 - 589 18.1 3 3 Op 1 13/0.000 - CDS 713 - 2512 2896 ## COG0173 Aspartyl-tRNA synthetase 4 3 Op 2 . - CDS 2548 - 3948 1872 ## COG0124 Histidyl-tRNA synthetase - Prom 4016 - 4075 2.2 + Prom 3910 - 3969 3.0 5 4 Tu 1 . + CDS 4048 - 5508 2394 ## BL0016 hypothetical protein + Term 5604 - 5649 12.5 - Term 5460 - 5491 -0.4 6 5 Tu 1 . - CDS 5714 - 7507 1152 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 7612 - 7671 1.9 - Term 7596 - 7637 8.5 7 6 Op 1 . - CDS 7679 - 8437 890 ## COG1402 Uncharacterized protein, putative amidase - Term 8470 - 8514 8.9 8 6 Op 2 . - CDS 8523 - 9899 1846 ## COG0477 Permeases of the major facilitator superfamily 9 7 Tu 1 . - CDS 10089 - 11591 992 ## BL0012 hypothetical protein 10 8 Tu 1 . + CDS 11734 - 13053 1469 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases + Term 13177 - 13208 4.1 - Term 13059 - 13092 4.5 11 9 Tu 1 . - CDS 13233 - 15842 2400 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 15867 - 15926 1.5 12 10 Tu 1 . + CDS 15992 - 16957 1149 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 17142 - 17170 -0.9 13 11 Op 1 . - CDS 17069 - 18256 1225 ## Blon_0700 narrowly conserved hypothetical protein 14 11 Op 2 1/0.000 - CDS 18265 - 18654 489 ## COG1278 Cold shock proteins - Term 18673 - 18708 1.1 15 11 Op 3 40/0.000 - CDS 18724 - 20715 1865 ## COG0642 Signal transduction histidine kinase 16 11 Op 4 . - CDS 20746 - 21477 1175 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 17 11 Op 5 . - CDS 21470 - 22321 540 ## BLJ_1475 hypothetical protein - Prom 22351 - 22410 2.2 18 12 Tu 1 . + CDS 22351 - 22641 332 ## BLJ_1476 hypothetical protein + Term 22684 - 22715 4.1 - Term 22667 - 22708 8.8 19 13 Tu 1 . - CDS 22738 - 24363 1498 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 20 14 Tu 1 . + CDS 24362 - 24751 57 ## - Term 24532 - 24570 7.1 21 15 Tu 1 . - CDS 24601 - 24840 364 ## COG1278 Cold shock proteins - Prom 24935 - 24994 4.2 22 16 Tu 1 . - CDS 25070 - 25753 688 ## BLD_1991 hypothetical protein - Prom 25780 - 25839 2.4 + Prom 25742 - 25801 2.8 23 17 Op 1 . + CDS 25869 - 26558 576 ## COG0692 Uracil DNA glycosylase 24 17 Op 2 . + CDS 26598 - 27677 1284 ## COG0714 MoxR-like ATPases 25 17 Op 3 . + CDS 27674 - 28624 659 ## Blon_0689 protein of unknown function DUF58 26 17 Op 4 . + CDS 28633 - 29175 286 ## BLD_1987 hypothetical protein 27 17 Op 5 . + CDS 29175 - 30230 979 ## BLD_1986 Von Willebrand factor type A-like protein 28 17 Op 6 . + CDS 30227 - 31258 1126 ## Blon_0686 von Willebrand factor, type A 29 17 Op 7 . + CDS 31228 - 31857 624 ## BLJ_1487 cell surface elastin-binding protein EbpS + Term 32092 - 32125 1.0 - Term 31728 - 31787 -1.0 30 18 Tu 1 . - CDS 31841 - 31972 85 ## 31 19 Op 1 . + CDS 32127 - 32447 201 ## BL1805 hypothetical protein 32 19 Op 2 . + CDS 32444 - 34048 998 ## BL1804 hypothetical protein 33 19 Op 3 . + CDS 34099 - 34239 69 ## BLD_1981 hypothetical protein 34 20 Tu 1 . + CDS 34420 - 34680 80 ## BLD_1980 hypothetical protein + Term 34834 - 34882 1.8 35 21 Op 1 . - CDS 34645 - 34758 91 ## 36 21 Op 2 . - CDS 34816 - 35457 979 ## COG4721 Predicted membrane protein - Prom 35540 - 35599 2.5 37 22 Tu 1 . + CDS 35590 - 37026 2264 ## COG0015 Adenylosuccinate lyase 38 23 Tu 1 . + CDS 37140 - 39701 2762 ## COG0392 Predicted integral membrane protein + Prom 39737 - 39796 5.2 39 24 Tu 1 . + CDS 39847 - 40128 475 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 40172 - 40210 9.1 - Term 40159 - 40196 8.1 40 25 Op 1 . - CDS 40244 - 41704 1655 ## BL1797 proteasome-associated protein 41 25 Op 2 . - CDS 41704 - 41907 315 ## 42 25 Op 3 . - CDS 41998 - 42894 1293 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 43 25 Op 4 . - CDS 42906 - 44573 2143 ## BL1795 proteasome-associated protein 44 25 Op 5 . - CDS 44595 - 46160 2221 ## COG0464 ATPases of the AAA+ class 45 25 Op 6 . - CDS 46221 - 46919 242 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 46 26 Op 1 . + CDS 46970 - 47692 867 ## COG0560 Phosphoserine phosphatase 47 26 Op 2 . + CDS 47732 - 50044 1429 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 48 26 Op 3 . + CDS 50103 - 50807 1179 ## COG1011 Predicted hydrolase (HAD superfamily) 49 26 Op 4 . + CDS 50831 - 51817 1157 ## COG0223 Methionyl-tRNA formyltransferase + Term 51861 - 51887 1.0 - Term 51909 - 51948 7.1 50 27 Tu 1 . - CDS 51973 - 53835 2684 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase - Prom 54003 - 54062 1.7 + Prom 53850 - 53909 4.3 51 28 Op 1 . + CDS 54037 - 54321 535 ## COG1758 DNA-directed RNA polymerase, subunit K/omega + Term 54372 - 54409 3.1 + Prom 54389 - 54448 3.8 52 28 Op 2 . + CDS 54599 - 55819 1852 ## COG0192 S-adenosylmethionine synthetase + Term 55831 - 55889 22.4 - Term 55825 - 55871 16.2 53 29 Op 1 . - CDS 55887 - 59174 2333 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 54 29 Op 2 2/0.000 - CDS 59171 - 60718 349 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 55 29 Op 3 . - CDS 60733 - 61740 496 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|316916809|gb|ADCN01000005.1| GENE 1 40 - 354 453 104 aa, chain + ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 4 99 282 376 383 125 64.0 1e-29 MQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFP KGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELLDAA >gi|316916809|gb|ADCN01000005.1| GENE 2 457 - 687 163 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVRGLPHGGGAIGRSIWHPLAGIWHIGPHPQKANGPWNYSKGHLRLIAPEHYSSKINLRV RRPPFEAEDALKYVEC >gi|316916809|gb|ADCN01000005.1| GENE 3 713 - 2512 2896 599 aa, chain - ## HITS:1 COG:Cgl1597 KEGG:ns NR:ns ## COG: Cgl1597 COG0173 # Protein_GI_number: 19552847 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 7 594 3 590 608 732 60.0 0 MSQTAYRTHHATEVTEALVGQKVTLAGWVDRRRDHGGVAFIDLRDSTGLVQVVIYDEDMA RPLRSEFVIQITGEVRLRPDGNENTHLVTGKIEVVAETIEILAKSDALPFQVSTALENES ENKLPGEDVRLKYRYLDLRRPSMQHNLKLRSDMAKAARHALEDMDFTEVETPTFIKSTPE GARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQ LDMEMAYVDQEDVMAMTEKVIAAIWKSAGYEVQLPLPRITWKDAMDKYGSDKPDLRFGNP LVELTEYFKNTPFRVFQAPYVGAVVFKGGAATPRRQFDAWQDWARQRGAKGLAYVVFGEN GELKGPVAKNLSDEERNGLREAVGAEEGDAVFFAAGSRESAQLLLGAVRVELASREGLLD PKKFAFTWVVDFPLFKPTDDPDDDDVAVGHSKWTSMHHPFTMPSKDWIDKFDKDPEHAMS DSYDIVCNGEEMGGGSVRIHRDDIQARVLDVLGITKEEADEKFGFLLEAFKYGAPPHAGL ALGWDRTVSILAGADSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPDAEEN >gi|316916809|gb|ADCN01000005.1| GENE 4 2548 - 3948 1872 466 aa, chain - ## HITS:1 COG:XF2222 KEGG:ns NR:ns ## COG: XF2222 COG0124 # Protein_GI_number: 15838813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Xylella fastidiosa 9a5c # 1 417 1 421 466 254 40.0 2e-67 MAKGASISGFPEWLPSERVVEQRVIDTLRKVFELNGFIGIETRAVETGASLLKKGETSKE IYLLSRLQEVGHESDTPIEERLGLHFDLTVPLSRYVVEHSGALAFPFKRWQIQKVWRGER PQEGRFREFVQADIDVIGAGDLPDHYEVELPLVMVSALEELRAYGLPKATVHANNRKLSE GFYRGLGLTDVEGVLREIDKLDKIGADEVARLLTETCGATEAQARACLELAELTASDGAE LAAKFDALCEAHGIVKDSEAYTLARQGLDTLAMIVDEAAAIRPGSVIADLKIARGLDYYT GSVYETFLDGAASLGSICSGGRYDNLASQGNRKYPGVGLSIGLSRLVSYMLHTAGAHANR VSPAAVLVAVWNEEDRPAANRIANQLRARGIATDVAPTAAKLGKQIKYADKLGIPYVWFP ATAAEGAEGAEPAGDEVKNIVTGEQVAADCTSWEPDTVVAQQTVEI >gi|316916809|gb|ADCN01000005.1| GENE 5 4048 - 5508 2394 486 aa, chain + ## HITS:1 COG:no KEGG:BL0016 NR:ns ## KEGG: BL0016 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 486 1 486 486 617 99.0 1e-175 MADETVTEPVNTAAPEEQATIPAPEASAATPAPTPSPASMPKPHAPSPAAFAKKTPAAKP RAAAPAAATAAYSEADVKAAEAFGRVDDNGTVFVKDGDAEREVGQFPDVSKEEALALYAR RFLDLKAKLDLLATRLASPNIKAREIDESVKLLGEETSEPAVVGDLAALKTQYEELKAAG EAKKTEIAEARKAAQAKAVAERTAIVEKAEALAASLGDNTNWRSTADKFRNLFDEWQNHQ RTTVRIDKPEAEALWKRFSVARTTFNQARRKWAQARDNERTAAKEAKEAIIAEANELKDS TAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNARQADRDQINSSEKEN LAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPRDDMRRIENRLDAVDK QIKAIEDAAWKQTDPEADARKSSFEEQLNAQLAELDAKIAAESDPKKKAKLEAEKATKEQ WLNAIK >gi|316916809|gb|ADCN01000005.1| GENE 6 5714 - 7507 1152 597 aa, chain - ## HITS:1 COG:Cgl0328 KEGG:ns NR:ns ## COG: Cgl0328 COG0737 # Protein_GI_number: 19551578 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Corynebacterium glutamicum # 37 582 23 523 694 125 26.0 2e-28 MKNRRWAGKRSGIAFGAVALILTALVVPYACAGTTGAVPFSGDNPSSGTRTVTIADITDF HGHIERGADNATAFTVADSHNPGNMIPVSTGDLVGGSPYESAVEKDQPTLDMAKAWGLTI SAVGNHEFDRGVADFNNRIADPSNGIDWLCANTSAASKSPDGLLSHVRDSTIRTVNGKRI GFVGALTGALGSVATPQITRDADLDERAVDAINRVARELKRSGKVDAVVALLHADASAAA DIGRDVDVVYTGHSHAIKRGTTAGGAPIYEAGSFGRNMAVQDLIITGAGRRATVRVADVD LGNGTSHTAVDGVLGVDGLNAHPAQAAWMSAGAEENDEVSRAQHIYQASATYANHTGSAV IGTLASGVNFDKQGSDKHGNTVGVLVADANRESIMKHVYAGNRLPVIGFSNNGSLRTPRL DMNGDGKVTVREVDSLMALQFKAAHETLTGRDVKRVLAEQFRRDDGRLERRWLGISSNVT YRYAECGTAGESGNADAGVDTDSGADTNADADECAADEHAAVRIVNLAVDGRPIADDDLV IIASNSYLLQGGDSYPAFRAGTNYGELNMPYSQPLHEYLAAHQGLTAIVAAPVGTQA >gi|316916809|gb|ADCN01000005.1| GENE 7 7679 - 8437 890 252 aa, chain - ## HITS:1 COG:MK0183 KEGG:ns NR:ns ## COG: MK0183 COG1402 # Protein_GI_number: 20093623 # Func_class: R General function prediction only # Function: Uncharacterized protein, putative amidase # Organism: Methanopyrus kandleri AV19 # 5 248 4 218 224 84 27.0 2e-16 MGSNRRMDHMTWPEFKEVKTHPVIVPIGSTEQHGQHLPIGTDAVLATRVAEDLAERIDGT VLPTLSYGYKSKPLSGGGPLFPGTIDMNGVTVITQMHDVLSELIADGFTKIVVMNAHFEN EAFIVEAIDLVTRETGGVATIVETNWWDPVPQSVIDKVFDGLVFPGWALEHAAVTETSLM LHYAPELVHMDRMVEEAGATAKSYVRYPVRQGDVPAHGGLANPAGSSAERGRLIAEACVD AVAEICAEEFGE >gi|316916809|gb|ADCN01000005.1| GENE 8 8523 - 9899 1846 458 aa, chain - ## HITS:1 COG:STM4290 KEGG:ns NR:ns ## COG: STM4290 COG0477 # Protein_GI_number: 16767540 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 25 455 23 446 500 272 34.0 1e-72 MSSATITTSARLMNFTPQTEEQAMVRKVAVSSFLGNFIEWFDYASYSYFATTIALVFFPT DNHTVAMLQTFGVFALSFILRPIGALFWGSYGDKKGRKAALAHSIMFMSGASFLIGCLPS YSVIGVGAPILLLLLRMVQGFSASGEYAGAATFLGEYAPTSKRGIYCSLIPASTAIGLLA GSTLATLMTANMNSSAMVGWGWRVPFLLAGPLGLIVLYIRTKLSDSPVYQSMNDALESKS AASADGQVVSKSGMFAPLAELFHNHLKALIISFGACVLNAVGFYTVLTYLPTYLSDTVGM DATQSGTITTICLVAYVFMVFGMGHISDKFGRKKVLIGACVAFIVLTVPAFLILNTSQFW PVLLVELAMCATLTANDGTLSSYLTETFPTSVRFTGFAFSFNLANAIFGGTASFIATGLI ALTGSSIAPAWYMVGVAAIALVAMILSHENTDKDLNHI >gi|316916809|gb|ADCN01000005.1| GENE 9 10089 - 11591 992 500 aa, chain - ## HITS:1 COG:no KEGG:BL0012 NR:ns ## KEGG: BL0012 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 500 1 500 500 949 99.0 0 MTVSIRSVLHNTQFKRADPVVEVEGKDLDTPVRWVFTNEREDVSSFLSGGEMLIIEGNAL LAADWHGTLGQYVASLAQAGVAALVVELVEGVVRMPDELVSAARLHGLTLIGLKSRVPFV DICQSVNTAIVHEQMHLQLEVDTMSTSLREGLSRTGNIEAVAETIASLFGESVAIFDGDG LLAARAGRAFDAGNESSAVIALESRSRPVGALEITQRTMTSDATMRRAIATIVSPVAALY IDGGARMGMMHHLSMGPADGVHVNTFEAQEAHAMLEALGFAGSCIYMPFAFRFRSVVEGI NHVSTMVERFEELSGCAVSCMLEGDLMVGWCSTTDSSDGAAAFGRHCMDALAVLEGDGIY VVHGRVALDTVTLVDGFAVLRDIANHEPAYGRVVSTMSALVDRFVASSDMDKAMRMLVVQ TIGFEVAASPLLLDTLCACFDNLDSKTGACEQLGIRRQTLYNRLDKVTQMVGVDYNDKPN WSMLLFAAKLTKSWQEQHGE >gi|316916809|gb|ADCN01000005.1| GENE 10 11734 - 13053 1469 439 aa, chain + ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 26 425 19 404 426 385 48.0 1e-107 MTTTLFTNAHIATGEPGSTAASTLPLQDILVTDGVFTAFGPGLAQQYEAQGGDLAAIEVV DLGGKLVCPPFCDTHLHLDYVFTARKPGAVNESGTLFEGIQRWSETKSDLTVDEIKQRAK IGIKKEMLHGVQLIRSHADVTDPNLTSLKALLELKEELKDTVTLQIVSFPQEGMYSYEGP HGESGAELVEEGLKMGADCVGGIPHFEQCREFGEHSMHTVVELASKYDKLIDVHCDETDD PNSRYVELLSALAYKAGIGPKVTASHTCSLGSADNAYFFHLTKLLKAAHINFACAPTENL YLQGRQDTFPKRRGITRVKELTEAGVNVSLGQDSMQDPWYPLGNGNMMLILDYVLHLAQM MSFEEIDDALKFLTVNGATTLGLRDMYGLETGKPANFIVLDADSVFNAVYERCSVLRSVR AGRTLFTREETIDTGLALL >gi|316916809|gb|ADCN01000005.1| GENE 11 13233 - 15842 2400 869 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 824 2 813 815 929 56 0.0 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR KQVEEMIGKGNAAPNGHIPFTPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVG TQVLIKMDVDLGELRSATIDMIRGNSGTGTGDGKGDLANAGGVTDKQNKSGSAILDQFGR NLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAG DVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAG SADGALGASDMLKPMLARGELQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETI EILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDKAIDLIDEAGARLRIKRLT APPELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVK MVVDEDVIAEVISSTTGIPVFKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTR VGLKDPKRPSGSFIFAGPTGVGKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFG APPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTLLQVLDDGHLTDGQGRKVD FKNTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDD IIVFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRR VIQRDIEDAISEKILMGDLEDGQRVIVDAEGEGILGEFTFKGEEFEEPAAADKPAEDGAA TDGETPADATPATEPAESAPADSGDAPQE >gi|316916809|gb|ADCN01000005.1| GENE 12 15992 - 16957 1149 321 aa, chain + ## HITS:1 COG:MT2061 KEGG:ns NR:ns ## COG: MT2061 COG0589 # Protein_GI_number: 15841487 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Mycobacterium tuberculosis CDC1551 # 1 319 1 291 295 80 28.0 5e-15 MSEAATKPDIVVGVDGSDESFAALKWALEEASLTGQSVNAVFGWTHSWDMGSEPDSDEAW AKVRHDIANELRVWVDKAAAGIDFDPANLKLTSVKASGTSALLQIGHDSQQIVVGRRSLS RMARWFMGSLSASLAEAAEVPVTVVRIAGSEDETVTEAIANALTPGDKPVHYTQPQPVVE EARRPVVVGVDGSETSRRAFDFALEEARLHDAPLHVMFCWQLKDLGVIPGYENAVAPVKV GQRRAEEILSELMAKARIPDGVKVSTNAFHIPASKGLIAASRYASHLVVGSRGLSGLDAH FLGSVSRQIVNFAECTVTVVH >gi|316916809|gb|ADCN01000005.1| GENE 13 17069 - 18256 1225 395 aa, chain - ## HITS:1 COG:no KEGG:Blon_0700 NR:ns ## KEGG: Blon_0700 # Name: not_defined # Def: narrowly conserved hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 395 1 395 395 610 98.0 1e-173 MTDTTETIVTPDPHAIARAVLLEVADESDQVGDFVTSYDLEDHVTDFRFAANIRGYEGWQ WSVTLYHDEEIDSWTVNESSLIPTEGALMPPKWIPWKDRLEPTDLAPTDSIGTDPDDERI EEGEVEESSLQDVNDAVETFRLTRRHVLTSLGRAQAAKRWYEGPRGPKALSTKTAEGNLC STCGFFVPLAGELDRMFGVCANKWSPDDGRVVSLDHGCGEHSEIEPPEPSQLWVQSKPAF DDLHIDVVANRPRKQEPAAQDEAEGETDKTGEPAGDDIEAQKTVDGNAVDTEPAEEAAGD GTSQSQSAGDESVAQNVSDSVVDVDAADSSDDSKSDADDEATEEDILNNTVADDDEDDEM DDEEDNVRPSDDVTPELETVIDLIEQLRQNRADEE >gi|316916809|gb|ADCN01000005.1| GENE 14 18265 - 18654 489 129 aa, chain - ## HITS:1 COG:MT0893 KEGG:ns NR:ns ## COG: MT0893 COG1278 # Protein_GI_number: 15840284 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Mycobacterium tuberculosis CDC1551 # 1 126 1 134 135 110 41.0 6e-25 MPTGRVRWFDAAKGYGFITSEEGKDVFLPAQALPTGVTTLRKGAKVEYSVVDGRRGPQAM DVRLIASAPSLVKATRPKADDMAAICEDLIKMLDAAGNTLRRHRYPSAADSKKLATLLRA VADQFDVQD >gi|316916809|gb|ADCN01000005.1| GENE 15 18724 - 20715 1865 663 aa, chain - ## HITS:1 COG:MT3871 KEGG:ns NR:ns ## COG: MT3871 COG0642 # Protein_GI_number: 15843384 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 238 626 161 496 506 181 35.0 3e-45 MSIPDKQSGGVPPSSTPNAAPNTNPMPAMSPFAAHFQEQRERKKNMLMRHIDRISLSSKL VACTIAVLLIGVSVISFSIRALVNNYMLQKTDTQLSSQSQLVVNNIDLLSKNDSSGPNSY FLQIQYTDGTKDKEGNPLVVTPLMPQMQDGIVSVPILPTYGDTNGITLGQAFTTQAVAKQ IITVQSDSADSQNDPANGNSNSSDTITKVLANPTANANHAAIVTARAPWRILPVTFQQNG KDRAVVYIGLSLADQIDTVNTLTRYCIVVGIAVVLLGGSLSTLIIQHTMTPLKRIEKTAA KIAAGDLSQRIPSAPENTEVGSLAASLNSMLTRIESSFHEQEETTDKMKRFVSDASHELR TPLAAIHGYAELYKMQRDMPGALERADESIEHIERSSQRMTVLVEDLLSLARLDEGRGID MTGTVKLSSLVTDAVDDLHALDPDRAVRRMQISLEPARDLNHPAEFSLAEGDWPEVVLPG DASRLRQVVTNIVGNIHRYTPADSPAEAALGVMPAAIDPRQLARMPASDASMRRFIDAAE VGASMQTGYRYAVLRFVDHGPGVPPESRSKIFERFYTADPSRAREKGGTGLGMAIAQSVV KAHHGFICATGTDGGGLTFTVVLPIEQIAAPEPKQSTGKTKDAKQKTSWFSSERKTQATQ PKA >gi|316916809|gb|ADCN01000005.1| GENE 16 20746 - 21477 1175 243 aa, chain - ## HITS:1 COG:MT0782 KEGG:ns NR:ns ## COG: MT0782 COG0745 # Protein_GI_number: 15840172 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 6 242 13 240 240 263 57.0 2e-70 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML PDIDGFTVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA ILRRTREQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKA QILDHVWQYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE PKN >gi|316916809|gb|ADCN01000005.1| GENE 17 21470 - 22321 540 283 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1475 NR:ns ## KEGG: BLJ_1475 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 283 1 283 283 417 96.0 1e-115 MYGGRLPIPAVKVEDMSTTNREDGKTTIVVLASEPSYSAFGNMVRKWLVCAICALAAVAM NAMWITANAYGDNSSDSSDSSSSSTDSGVTITENITDTENLLGSHAAEVTDAIAKTEKET GVHVHLLYLSSFNSQQKPGDWAATVMESMNPKPNTVMLAVASNDGNLVVVVSKNSDKWLL DNKTVDKLSEAAQQPLLENPPSWSGAATAMMDQIVKSKKASTSSSTVIVGIIIMGVVLVA LVIIIVVMVVIHRRKEIKKDSKAELQDDIQETPRRARHSRKHE >gi|316916809|gb|ADCN01000005.1| GENE 18 22351 - 22641 332 96 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1476 NR:ns ## KEGG: BLJ_1476 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 96 1 96 96 101 100.0 9e-21 MPQYQVDSERIQSSSAAVATSISQIRQAVGGMYTNLNALQDAWRGSAATQFTAVAEQWRA AQQQMEASLESIQRSLTQASTVYADAEIQASRLFAS >gi|316916809|gb|ADCN01000005.1| GENE 19 22738 - 24363 1498 541 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 536 3 536 547 581 56 1e-165 MAKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEID LEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIE KATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKIAEALDKVGQDGVVTVEDNNR FGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMK TGKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVS DELGLKLESVDTSVLGHAKKVIVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDR EKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQA AAKAEKTEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFN AATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKSAAPAAGADMG Y >gi|316916809|gb|ADCN01000005.1| GENE 20 24362 - 24751 57 129 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVAYSSKWLGIPVITRKRRVVTTSRQLPIITLDLRVLTQTLALAPAECQHHRRRLRFGHE KAPTVETVRAFNAHPCVRVAHSERASPEDSLTTSFACVPLPDEAGVYSTRSPSYSILNLL VLPSSLISA >gi|316916809|gb|ADCN01000005.1| GENE 21 24601 - 24840 364 79 aa, chain - ## HITS:1 COG:MT3750.1 KEGG:ns NR:ns ## COG: MT3750.1 COG1278 # Protein_GI_number: 15843260 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Mycobacterium tuberculosis CDC1551 # 1 71 1 67 67 64 53.0 5e-11 MAQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSG KGTQAKDVVKLSSGEARSE >gi|316916809|gb|ADCN01000005.1| GENE 22 25070 - 25753 688 227 aa, chain - ## HITS:1 COG:no KEGG:BLD_1991 NR:ns ## KEGG: BLD_1991 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 227 1 227 227 290 100.0 2e-77 MARDTMTYESYEPDSFDNPPKGPVGVHRGARSVMARLCPFIVVILVAALCGVGAWAWISG EYKNVVGGSSQTATTSKSDSSSKAETKNSTKDDSSSTSTDSSKDSTSDSAKSDTDSDTTS SNENQNSDQQSQQSEAIATVNKATQVRVVNATGIQGYAGQQADVLQTAGYTSVEATNPSG TLPASSVVWYQNETDKATAEDVATTLGISAVEQVQGLAVPITVVLLN >gi|316916809|gb|ADCN01000005.1| GENE 23 25869 - 26558 576 229 aa, chain + ## HITS:1 COG:ML1675 KEGG:ns NR:ns ## COG: ML1675 COG0692 # Protein_GI_number: 15827886 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Mycobacterium leprae # 3 229 4 226 227 283 65.0 1e-76 MIKPLSELVEPGWAHALADVEPTIHHMGDFLRAENAAGRPWLPASHNILRAFTIPFDSIK VLIVGQDPYPTPGHPVGLSFCVAPNVHPLPKSLINIYKELVDDLGVPMPTNGDLTPWTER GVMLLNRCLTVGVGRPNSHQGKGWEEVTEAAIRALNARTDADGKPQPLVAILWGRNAQSL EPLLTNAFIIKSPHPSPLSASRGFFGSKPFSRANQALVTMGADPVDWTL >gi|316916809|gb|ADCN01000005.1| GENE 24 26598 - 27677 1284 359 aa, chain + ## HITS:1 COG:PA4322 KEGG:ns NR:ns ## COG: PA4322 COG0714 # Protein_GI_number: 15599518 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Pseudomonas aeruginosa # 23 359 6 333 335 252 42.0 8e-67 MTLFPTQPNIPSPTTAARPVAVPAPGVSAPLGADDAKRARILADAIRARFAQTLVGQDNL RESLIVTLVAGGHILIESVPGLAKTTAAQTLATCVSGSFKRVQCTPDLMPSDLVGTQVFD FASQKFTTQIGPIHANFVLLDEINRSNAKTQSAMLEAMAEGATTIGGQRIALPKPFMVIA TENPIEEEGTFNLPEAQMDRFMMKAVMTYPSPDEEARMLAMLTRRGSDMIGPDTITGERI SVSDVDFLRKAARRVHVSDAIMRYAVDITATSRGAGSRPIKGLSSLVRLGASPRATIALT RIGQAKALLSGRDYVVPEDLKAFAHEVLRHRIMLTFEALADGVVSDQIVDKIVETVPVP >gi|316916809|gb|ADCN01000005.1| GENE 25 27674 - 28624 659 316 aa, chain + ## HITS:1 COG:no KEGG:Blon_0689 NR:ns ## KEGG: Blon_0689 # Name: not_defined # Def: protein of unknown function DUF58 # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 316 1 316 316 541 98.0 1e-152 MSSDSVRKKIEALGTQLSLPTVRKALGALEGEHASGRRGGSGDAMDVHAYEPGDESRLID WKTSARQGRPMVVERERLSTSRVWLLMDVGLEMTGVCPSGERAWQVAANALRMFAALSLR RSDDISLVFGDESSITRVPFNGGFAQFERTLDKALDRDWDHHRNIDALLEYARRIKDREA LIVLATDEHAMEERHITTIRRITRTHPMVLIDVATMNPFKAVSSRHAPTDGLSARRVPAF LRNVKAAAEVDTHRAYMAAALEQELTRAGSHIIRSASSESMFDRFVALVSRALARTTRNR LGTAPELVGLTLAGDL >gi|316916809|gb|ADCN01000005.1| GENE 26 28633 - 29175 286 180 aa, chain + ## HITS:1 COG:no KEGG:BLD_1987 NR:ns ## KEGG: BLD_1987 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 180 4 183 183 321 100.0 6e-87 MFPIIPLATDPGDLRPVESLALTTPLVVAIVACLLLAVGLIALIIMLSRPARKPRNSDRA RGAHSNASSKAEWRARIDDVVARHESGALPRHEAFVELSVIARDFAGAASGKELSSSTLT DLAYLNRTPANRQGLDALKQTIGALYPPEFADDARNRIAQTTSVQQAAEWVANLVERWRS >gi|316916809|gb|ADCN01000005.1| GENE 27 29175 - 30230 979 351 aa, chain + ## HITS:1 COG:no KEGG:BLD_1986 NR:ns ## KEGG: BLD_1986 # Name: not_defined # Def: Von Willebrand factor type A-like protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 351 2 352 352 658 99.0 0 MLAWHWPWAALAGVLATLAIIVLIVVFARRNAADDTPVFSMDDDLNTEHASRLFRQWRAL GRLAISVLVLALALAIVLVARPSQVDAGDERASSRDIVLCLDVSGSTLPYDREVIDTYLE LVKHFKGERIGLSIFNSTSRTVFPLTDDYELVTKQLTSASKALKGVESQDDIDKMSDAEY QDIANWLEGTQNRKDATSLIGDGVVSCAAMLPGFAYGEANHANADRQRAASIVLATDNVV SGKPTYSLTEALDLTQQTKITVDGLYSGPKASESDQTTTDMKSAIESHGGIFLTQSNGAS IDELVRDIQSRRDTDVENKAKSSMVDAPGLWTLALAVILIIWIVCAWRLRR >gi|316916809|gb|ADCN01000005.1| GENE 28 30227 - 31258 1126 343 aa, chain + ## HITS:1 COG:no KEGG:Blon_0686 NR:ns ## KEGG: Blon_0686 # Name: not_defined # Def: von Willebrand factor, type A # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 343 1 343 343 551 96.0 1e-155 MNGFTFSPALGWVAGGLLAAGLAVLAILEIALFVRRRASSDETVWACIRRTLMLLIVAVM VLTPSVVSSTTSQAINATDVIVAVDTTGSMAVADATYGSEKTITRIDAARQAVHDVTAAY PDASFAALRFGASGTLDVPLTPDAPAIDNWANTLAVEATSVSAGSSLDAPIDQLLLTVKS IREAHPDDAIVLYLITDGEQTSNVTRRTFSSLRQYLNDGFTVGVGSTEGGKIPVIADGVS AGDSNTTDHWVVDPDTGEPGISKMDEKNLKDIADEISGTYVAVNASQTLADSVSAKSSKQ WRMTTTVRERTRTTPVVWPLAIALAILLAMEVGAWIATSRRLL >gi|316916809|gb|ADCN01000005.1| GENE 29 31228 - 31857 624 209 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1487 NR:ns ## KEGG: BLJ_1487 # Name: not_defined # Def: cell surface elastin-binding protein EbpS # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 209 1 209 209 254 95.0 1e-66 MDRNLKETAVRNSNEIHENDGSANTRMRAKCPLWARIVLACGAVLLLLVAGVAAVNLSAS ITFNQATASLNANIKAAQDESTDITTLKAQQQQTDAQFNEAGRMRTLLLPQVKDAIDTNA SISSELTKITLKQAEAQNSGSDSGQAQSAQQSENSSSNAKKGGALTDEQKKQVEELMKAN QQSTDTQSNTTQSEQKATQNKGTGATKPW >gi|316916809|gb|ADCN01000005.1| GENE 30 31841 - 31972 85 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYRKLDKCQSRQPKPGNSRDKAMTREGVRKKNNCERLLTTAW >gi|316916809|gb|ADCN01000005.1| GENE 31 32127 - 32447 201 106 aa, chain + ## HITS:1 COG:no KEGG:BL1805 NR:ns ## KEGG: BL1805 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 106 10 115 115 184 100.0 7e-46 MNTYTSNPAPIDPTGGFAGNTVTPFDYGTCPCHAAVQRSRDLVSVQRAATLAQSDQTAVA VNRSSNIVWTGKAADLFRSRLSRTAQYSASLAQDMETTHRLAWGSS >gi|316916809|gb|ADCN01000005.1| GENE 32 32444 - 34048 998 534 aa, chain + ## HITS:1 COG:no KEGG:BL1804 NR:ns ## KEGG: BL1804 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 534 5 538 538 934 99.0 0 MSEHDYWQVESSVYGGVGYAPATLEEYVVIAKALDDEAAGFAAIATAWESAALQLQSHRH SAPMCVTLQSGDPSAVVPGHVTAPYAALGNRCYDHATACQRLSDDLRGAADLLIRAHSLY SQAEMTARRMFTELLQAGTQAKPGYAAVGVAAVAAGGFLAGWTIDGKPNSAWMSTFTYPF QEGVLSGAGGIIGGVPIGKSIAHTDEVNKAAGKIANFSGPAKDVVQGNHLDVREVQANAD VVRASGSVAESMENLRRLAEERLGKIELNSGLEYGTIAIQRYERSDGTNSWLVTIPGTDG QPDSPFGWAQNVELMSADQERRRKADSARMVAEAMRQAGIGKDEPVALIGHSQGGIVAAT LASDWAEEYTIEHVVTAGSPVANHPIPQRTWVTSVEIDDELVAALDGAANPVTDNWLTVQ GHVSPAPAATPSTVHSDGSCTPGATPITGLTPYDAAPVAGSTNGRELSHWIKYHQAAYQN ATDLGSPAVQRHEAHFQEVINGELKETRYYQGRMTQSATIAPSERTTEFSTFGG >gi|316916809|gb|ADCN01000005.1| GENE 33 34099 - 34239 69 46 aa, chain + ## HITS:1 COG:no KEGG:BLD_1981 NR:ns ## KEGG: BLD_1981 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 46 1 46 46 87 97.0 1e-16 MTSRRWLIKLMKQAAERKNVTFESIRQGGSHEIFQLDGLMIPHPTT >gi|316916809|gb|ADCN01000005.1| GENE 34 34420 - 34680 80 86 aa, chain + ## HITS:1 COG:no KEGG:BLD_1980 NR:ns ## KEGG: BLD_1980 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 86 36 121 121 142 100.0 3e-33 MARDLITVMTQDADFALTVETKLPQSVQEHLDEARRLRKEEAECRSNAARETRAAAQELH GMGLALQQIGDILGVSRQRAHQLVNA >gi|316916809|gb|ADCN01000005.1| GENE 35 34645 - 34758 91 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLAQQSRESGASRVSAVIALWGSRLMLSIDKLMCPLP >gi|316916809|gb|ADCN01000005.1| GENE 36 34816 - 35457 979 213 aa, chain - ## HITS:1 COG:Cgl1054 KEGG:ns NR:ns ## COG: Cgl1054 COG4721 # Protein_GI_number: 19552304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 21 206 16 199 201 100 35.0 2e-21 MPATTIHTPPKRPIAVSSLKWQPLDIAVGATLGAACGVIFWGFNFAYMPISSVFGAILPG FASIVHAVWYFSGTLAVLILRKPGAALYVNLIGTLVETVIGSQFDLGFVIISALLQGVFA EIPFALTRYRMLNLPISIASGALVALEYGTYLMLFRYVGVSFVSPRGIVHMISEVTGGVL ISGVMAWYLMLAIAKTGVLDRLASGRALIERRA >gi|316916809|gb|ADCN01000005.1| GENE 37 35590 - 37026 2264 478 aa, chain + ## HITS:1 COG:VC1126 KEGG:ns NR:ns ## COG: VC1126 COG0015 # Protein_GI_number: 15641139 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Vibrio cholerae # 5 473 2 452 456 405 46.0 1e-113 MKLTDISPAIALTPLDGRYHKATAPLVEYMSEPALNRERMRVEVEWMILLANGFEGNGNQ PIVDGVKPFTAEEQAFLRAIPEDFGAEGIKQHAAHEAITHHDVKAVEYYIDDQIDKAPAE LTNINDELKTLVHFACTSEDINNLSIARCVKNAMENVWTPEFKRIIDHLAGKAEEFKDMP LLSLTHGQPATPTTLGKELAVYVYRLNRQLKHIENQEYLGKINGATGTFGAHLAACPDVD WIAVSREFVTNRMGLTWNPLTTQIESHDWQAELYSTVSHANRIMHNLCVDVWMYISRGVF AQVPVKGATGSSTMPHKVNPIRFENAEANFEISCSLLDTLSATLVESRWQRDLTDSTTQR NIGSALGYSLLALTNLMGGLESIHPNTHVIERELDENWEVLGEPIQTAMRACELKGLPGM DKPYEKVKELMRGHTINKEQVEQFIDQQSFDPETAARLKALTPATYTGVASQLVAFGR >gi|316916809|gb|ADCN01000005.1| GENE 38 37140 - 39701 2762 853 aa, chain + ## HITS:1 COG:Rv0585c KEGG:ns NR:ns ## COG: Rv0585c COG0392 # Protein_GI_number: 15607725 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Mycobacterium tuberculosis H37Rv # 122 853 77 795 795 140 24.0 1e-32 MTTEQEQSTTEDRPDKATSSTTDRPIASGDGRSASFAVSGPDSPATDDSNDSGPYIDDIA PRRTRDFGDLTRAGLSLLMAAVVMVFAVYLGGMTRGVESDAHTAAQVINWLADFPSTVLT QLATIVIVIIVLAQLLLAREWLQAAVSALAMFAGYGMVWVVSTAISSLNDFTLPMALVSA ATSYGSGLLPDIYAGMASFLTAAGPRRTRSTVKWSWNILYAIAAVMVVLSWHSVTGMLVS MAAGRTVGMLIRFVVGTQNKGVWGKDLVAVLSSIGLETTSLIRHQEPRISHGSLSATLDD DLTEGSRIYDVETANNRRFIVSVIDAQTHTVGYLKQLWDWVRFTSVSIRRDRSVRDAVQH HFAMLLGLHNIKLPAPSPYGIADTDESAILVLDAHTIELPANLNTLTQADAVAYMRYLSV ANRRGYTHRRITPDTLARLEDGTAVIAGWLNGDSASGPANTALDKVQLLALFAALIGVKP AVAAAREAWGDTTLTTLAPFIQKVAVPSPTRALGTWDKQLLKELRDHINTIIDEETAESA EPVTLARFSWRSMITMLLVIVAVVVVFTQLKPEEIITALTNANPLMAVVTLAFGVCGWIG SSISLGALMDRNRRDNTGVFMSQVAGGFATVSMPAGVGPSFVNLQFLRKSGYRNTPATAI MSAALVVYYAVYFSMLVLIGLFTGRNMFSGAIPTNTLVLVLGVVVVVLSIAMMIPPLRHW VTRRLMPLAKTYINQLLDVLSQPRQLTVSCLGALFQNATTGLAFWAALQAFGYSSNPIET TFVFMLAYALGSAVPTPGGLGGVEAALTFAFVAVGVPQGVALSATLLHRVVFYWLRIPLG AAAMKWLDKHNLV >gi|316916809|gb|ADCN01000005.1| GENE 39 39847 - 40128 475 93 aa, chain + ## HITS:1 COG:L102317 KEGG:ns NR:ns ## COG: L102317 COG0776 # Protein_GI_number: 15672484 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Lactococcus lactis # 4 91 3 90 91 65 47.0 3e-11 MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAAR TGRNPRTGEQIDIPASYGVRISAGSLLKKAVTE >gi|316916809|gb|ADCN01000005.1| GENE 40 40244 - 41704 1655 486 aa, chain - ## HITS:1 COG:no KEGG:BL1797 NR:ns ## KEGG: BL1797 # Name: not_defined # Def: proteasome-associated protein # Organism: B.longum # Pathway: not_defined # 1 486 1 486 486 956 99.0 0 MPQLRDSGTRSLHATEPVPSAEMDGFCRIFGVETEYGVAVTGAERPVDAGQVAMTMFQPI VSRSRSTNTYLANGSRLYLDVGSHPEYATAEARDPREALAQDLAGEHVMRNLALKAQRKL RESYGAHATIHVFKNNVDSAGHAFGCHENYLVRRFVPLETIEHQLLPFLITRQLYTGAGR MTPDGFQITQRADFLDEAVSSATTRSRPMVNTRDEPHADPDSFRRLHVIIGDSNRSQWST WMKLAVTHLVLCAIEDAFRHGVPSGFEQYAFADPAAANRTVSRFLDNPRAELTLESGESV SALGLQRRYYAAVKAFIETHGDALAGSLPATTIDTIMGEWSRVLDALERGAYDALADRVD WAAKKRLFDALKRRRPDVTFAQMEQLELDYHDIANGRLYGSLVARNQMRELLTGDNVEYA VHNPPTDTRAALRGRFVDAALNVGAQFSADWTHLTLTAPERREAILLDPFEAEPTLGFEQ LMEALN >gi|316916809|gb|ADCN01000005.1| GENE 41 41704 - 41907 315 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQQFEQPQAQQAATQEDDALATTQAAAQTESTDQADVLDDILDDIESALETNAEEYVNS FVQKGGE >gi|316916809|gb|ADCN01000005.1| GENE 42 41998 - 42894 1293 298 aa, chain - ## HITS:1 COG:XF2476 KEGG:ns NR:ns ## COG: XF2476 COG0483 # Protein_GI_number: 15839066 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Xylella fastidiosa 9a5c # 94 260 80 231 275 81 34.0 2e-15 MEETREETPQDLRNLALKVAGLLEEAGQHALHDQLNPRNLAQPSTENADRGPRYKLEVDN KIMRFMSARIADIAHFDGFWTTRPAESRPGQRYWYIGKIDGVINYVRRMSEWTVTAALFE FGPDNEPKPIIGIVHAPALGLTYLAARGAGAVRIHKTAVGEKRDKVVPSMTSSLDGSVLS YGMSFIPSESQRALDVASSLAGRPADIKRVGPVSLDLCKVADGTYDAYFEPMLHVWDIAG IAAGTVVVWEAQGTLSRWDGERIHWRHDNDVVASNGLIIRELQHYLQQYPWLDSINQR >gi|316916809|gb|ADCN01000005.1| GENE 43 42906 - 44573 2143 555 aa, chain - ## HITS:1 COG:no KEGG:BL1795 NR:ns ## KEGG: BL1795 # Name: not_defined # Def: proteasome-associated protein # Organism: B.longum # Pathway: not_defined # 1 555 1 555 555 1082 99.0 0 MTVKRVMGTETEYAVSLNTPDRYNPVQLSFDVVNGAADSHSKSIRWDYRQEDPVNDARGT RLERAAARPDMLTDAPQLNITNVIAPNGGRVYVDHAHPEYSAPETTDPFEAVRYDHAGDL IMQAATEHARKQTGTPIALHRNNVDGKGSCWGAHENYMMARAVPFDLVTRLMTLHFVTRQ IYAGSGRVGIGENSEIPGYQLSQRADYIHAKVGLQTTFERPIINTRDESHSTDAYRRLHV IVGDANRMEVPQALKLGTTSMLLWLLEHADEAGFDLNAFLDELELADPVEAMHTVSHDLT LGASLPLANGGETNAWLIQLKLRQAVYQVAALVEGTDTAGEPAWPDKSTTSIMAMWQQAL IDCASIRHAADDDERLAMTGEASRIEWLLKWQLLEKLRRKITTTSAPGVANGWNDPRLKV IDLKWAALDPADSIFTKLEPRTERVVSAADIARATTEPPEDTRAWLRAKLVAQFGDEVAA ASWSRLTVRDPHAADEGEAVEFYGNAGHMAATDHHLFSLDISDPLAFTKAHCETELNSAE HAIDLLKSLAINAER >gi|316916809|gb|ADCN01000005.1| GENE 44 44595 - 46160 2221 521 aa, chain - ## HITS:1 COG:MT2175 KEGG:ns NR:ns ## COG: MT2175 COG0464 # Protein_GI_number: 15841607 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Mycobacterium tuberculosis CDC1551 # 3 510 55 575 609 390 43.0 1e-108 MSDTEDLAALNDRLMAKNHALAEALSRAGKELTKAKSQLAQLAQPPLTFATMVKVDSTRT DEDGIQHASAEVISGTRRMVVPVASNVNAARLTAGATVMLNEKLVLVEQRDADTVGQIRS VKQVLDDGRLIVTDASGNPVLIRRSGALAYAGINQGDRIIVDPSVRLAIEALPAEGDKDL VLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTM IAKAVANALCEGGYDTNGDGSISPAETHVKGVFLSVKGPELLNKYVGESERLIRLIFQRA RERAADGNPVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASN RVDMIDPAVLRPGRLDVKIRVGRPKTNQAIAIVDHYLTDDLPLEDGVDAHALSAVLVHDI YGTSERRHLCDVQEENGQWHALFLADVVSGAMLKNIVDRAKTRAVKESIETGSDVALTVP LLAAAVEDEYRETRDSMADVDPEQWSRINGMDPIRRIRTAE >gi|316916809|gb|ADCN01000005.1| GENE 45 46221 - 46919 242 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 26 226 4 198 199 97 32 1e-19 MAAATILATDPTPICTTTEPGLIGTITDWLIMLMETIGGIGVALAIALESIFPPIPSEVI LPLSGFTAARGTLSLPGAIIWATIGSVLGAWTLYGISRWVGLHRINLAADKIPGVSRKDV SKANDWFTQYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLHFTGWTLLGSAVWNTILVSA GYLLGDQWCSIQGALGVFEDVVIVAVIVIIVWFVVRKVRTVMRNRKSSDGNE >gi|316916809|gb|ADCN01000005.1| GENE 46 46970 - 47692 867 240 aa, chain + ## HITS:1 COG:L0085 KEGG:ns NR:ns ## COG: L0085 COG0560 # Protein_GI_number: 15672587 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Lactococcus lactis # 30 240 1 211 216 229 54.0 4e-60 MTQEDVHFVDKSAESEVGSPADSAVSVPTLSKPGLLVMDVDSTLIDEEVIDELGVVAGCG EEIAGVTARAMRGELEFCDALRARVALLEGLPISVFDTVHDKLHFTKGALELIDTLHEHG WKIGVVSGGFHEVVDMLAAEGHIDYWIANRLEVEDGHLTGKVLGEIVCKTVKLHALQAWA DRLGIPMSQTVAVGDGANDIPMIQAAGLGLAFCAKPKTQLAADKAINDRDLTHVLDYLRR >gi|316916809|gb|ADCN01000005.1| GENE 47 47732 - 50044 1429 770 aa, chain + ## HITS:1 COG:Cgl1564 KEGG:ns NR:ns ## COG: Cgl1564 COG1198 # Protein_GI_number: 19552814 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Corynebacterium glutamicum # 29 766 7 684 688 224 27.0 8e-58 MTTSGAEQLTLAGLAPRKRRKRASAEHTPAEQHPIAQVVLDVQALHLGQTFDYFIDEKDS EAAQPGVLVRVRFGSQRVSGVIWARTDTSDTPRSSIRYIERVLSPDVLVPASMREDIGLV AKAYGGTRANILRFAVPPRVAKVETEQRLAASFRRPVGGSLPDNTQGGFAGRGTNPDGTK PAGSTFAVASTVSEGAAQGYRRLTANYADVNVLHDALTGQRFQSFVFDSLPGAQEWQRNM AWMVATALSAGKAAVVELPTMREVEDLMHMLRNYGLKPFAPVPTGGWMGDVAVLNAKTMP AADRYRTYLAVALGQVKVVIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVM RLRAKSHGGVFVAMANARTPQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWL NRDELARLADPSIGARVPHTAVRVLSKALESGPVLLSIPQDNVSETLSCAKCHRQVRCAK CSGPLQLPADRRDSTPRCRWCGAAAINWKCPGCGHERMRVVRVGAAGTAAELAGLFRGVP VVLSSKTQGLVRDVACQPMIVIATPGFEPRVRPVSAEQGSAGHEYRAVAVLDAWTSLYAL GVDARLDTLTAWMRAMSLCAPRSRGGQALILGETDPAIAQSLMLWDSRILAAKDLEERVE TGMPPAVAAACVWGRRDAVMTLMQRIGALGGDWTACGELPGMLGPVPIAQPDTVDARELE ATADRVKAVIRVPQSRRAELAARLHRETARHVASREPGELRFRVDPKDLI >gi|316916809|gb|ADCN01000005.1| GENE 48 50103 - 50807 1179 234 aa, chain + ## HITS:1 COG:CAC3581 KEGG:ns NR:ns ## COG: CAC3581 COG1011 # Protein_GI_number: 15896815 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Clostridium acetobutylicum # 29 220 2 191 201 87 29.0 2e-17 MKGWPGEPDMDYDVLVADGEAAANAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTINE FLDNDISGFYDVNDLMDGGTSTDEAIAIIRRDRGDKWADILDYYIKNFRDSLTGIVPGAR VLVNDLKAAGIGVWGLSNWESSLFHVAEEQCDILQQLDGKLVSGFVKLRKPHKEIYEAAL NQFGIKADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPAVQ >gi|316916809|gb|ADCN01000005.1| GENE 49 50831 - 51817 1157 328 aa, chain + ## HITS:1 COG:ML0552 KEGG:ns NR:ns ## COG: ML0552 COG0223 # Protein_GI_number: 15827204 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Mycobacterium leprae # 1 325 2 315 318 220 42.0 2e-57 MLKLVFAGTPDVAVPSLKAFAADPRFDVVGVITRPDAPTGRGRKLTPSPVKATALELGLP VIDLKPRSPEFMEALNNLHADIAAVIAYGNILPKNVLDAVPMGWYNLHFSNLPKWRGAAP AQRAIWAGDPTTGADVFKVGEGLDDGPIVASLTIELTGRETSGELLDRLAEEGAPMYVDA LAAVGEGTATFTAQPAEGLEYAHKITVEDARISWTDEAEAIDRQVRACTPHPGAWTELFA EGPIADNDEPAAKPLTLHILAAQPADQSNPNTPAELQPGELKVGKKNVWVGTGSTPLELT QVKAQGKKAMRAADWARGARLSPAACVR >gi|316916809|gb|ADCN01000005.1| GENE 50 51973 - 53835 2684 620 aa, chain - ## HITS:1 COG:HI0738 KEGG:ns NR:ns ## COG: HI0738 COG0129 # Protein_GI_number: 16272679 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Haemophilus influenzae # 1 613 1 611 612 726 57.0 0 MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRI VSEAIKEAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICI PNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSD EELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFERAAKQ VVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTL DDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELDRAGKLHTNVHSIDYPTLEA KLADWDIMRPTCTEEAQQMYKAAPGHIISPEPWTHTTLFDSLDRDRANGAIHDINHPEIH EGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVI RYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPV ALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRNRHVSQALKAYAAFAR SADKGATRDPELINKLSGLD >gi|316916809|gb|ADCN01000005.1| GENE 51 54037 - 54321 535 94 aa, chain + ## HITS:1 COG:MT1435 KEGG:ns NR:ns ## COG: MT1435 COG1758 # Protein_GI_number: 15840849 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Mycobacterium tuberculosis CDC1551 # 2 87 48 133 133 100 61.0 7e-22 MAFGTDPTPDGLANPPIDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNIGPLV EYQNNEKPLSIAFREIDEGLLEETLGEDDANEGN >gi|316916809|gb|ADCN01000005.1| GENE 52 54599 - 55819 1852 406 aa, chain + ## HITS:1 COG:BH3300 KEGG:ns NR:ns ## COG: BH3300 COG0192 # Protein_GI_number: 15615862 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Bacillus halodurans # 2 400 4 396 399 469 59.0 1e-132 MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDSSSHVAVETSAATGVFLIFGEVT SKGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGDQETAA SREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGK TQVTIEYDDDDKPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNY RQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRW VAKNIVAAGLAHKVEIQIAYAIGVADPVSVNVETFGTEQGVTRGQIAAAVRKVFDLRPAA IIDELDLKRPIYLKTAAYGHFGRTDVEFPWEKTDKVEELKAAIAAE >gi|316916809|gb|ADCN01000005.1| GENE 53 55887 - 59174 2333 1095 aa, chain - ## HITS:1 COG:L0308 KEGG:ns NR:ns ## COG: L0308 COG0610 # Protein_GI_number: 15672632 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Lactococcus lactis # 5 975 2 906 995 332 29.0 3e-90 MIFDSESVFEDNVITVLKQHGWKDGVLRYPTEQDLLDNWKGILYRNNNDIDRLGKYPLTD GEMAQIIEQIETLRTPLALNSFVNGRTVSITRDNKEDVAHFGKEISLYIYDRKEIAGGKS TYQIAQQPVYPAKNKMLNSRRGDLVLLINGMPLIHIELKKSGIPVSQATNQIEKYTHEGV FTGLFRLVQIFVAMNPDDAVYFANPGVDKFNPSYYFHWADYNNEPICGGQNPGKDEWKLF IGGTSGTAGLLSIPMAHQLIGFYTIADSADGCLKVLRSYQYIAANAISDVVRKCDWEQRP TTPGRPGGYVWHTTGSGKTMTSFKSAQLIADSHDADKVVFLMDRIELGTQSLKEYRSFAD SETEVQGTENTGVLRDKLNSTNVNDTLIVTSIQKMSNVKAGERGVTQAWLDQLAARRIVF IVDECHRSTFGDMLQDIRRSFPNALFFGFTGTPILDENQKKNSTTAMVFGRCLHRYSIAD GIRDHNVLGFDPYMVTTYKDSEVRRAVALDKAKAESAEDALADSVKAKVFQHYMDKSEVP MGPMVDGAGNRISGIEDFLGRDQYGIDSPHPSMVVSDILEQFPVLSHAGKFHAMLAASSI PEAVNYYHLFKQQAPKLHVTALFDPNIDNNEGATDKEDALTEIITDYNEAFGKEFVIPTW PAMKKDISSRLSHKSPYGGIATNRSQQLDLLIVVDQMLTGFDSKWVNTLYLDKIIDYESI IQAFSRTNRLFGPDKPFGVIRYYRKPYTMHGFIEAAVKLYSGDRPLDLFVQKLPANVKSM DTRYREILDVFSDSGESDLMQLPESVEARRKFAKEFVELNRYLEAAKVQGFDWSTTEYKV DSTDTDDTNEDNDEHGESEVVRPQIDERTYLILAQRYKELFDGNSDRGSDPDDDVNDNPE APYELDGYLTEIDTGLIDTDYMNANFDKWLKALKENSPELAEMSAQLHRSFAALSRDEQR LAELFLHDVERGDVEVEAGMTLRDYITRYAAREKNEQVDKLVDRLGVNRSVVEEFLAKRI DEANINEFGRFDALRSSLDVQRAKAFFEQHDHKALPVFKVRMRATNMLKRFVLMGGFDID DTDNTDGQSETKNEH >gi|316916809|gb|ADCN01000005.1| GENE 54 59171 - 60718 349 515 aa, chain - ## HITS:1 COG:FN0191 KEGG:ns NR:ns ## COG: FN0191 COG2865 # Protein_GI_number: 19703536 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Fusobacterium nucleatum # 18 509 18 474 477 104 23.0 4e-22 METFDIVKLASYRENNRIEAKAAKGGLPRSMWETYSAFANTYGGVILLGVKEREDGTFET VGLTSAEVEHLRQDFWNTVSNRSKVSAVLPIESEVEVLEADDGMVVAIHVPRAPRDERPV HINDNLFEGTYRRRGEGDYRCTRQEISAMLRDQGTETMDSKVLDDLTVADFNADTVRAYR TRFRAARQGSSWTDLDDERFLRAVGAAMVSREDGKLHPTFGGLLMFGNDYDIVRECPHYF LDYQETLDPAIRWTDRVHSGDGMWSGNLFDFFFRVNRKLAESLKTPFKLNGIFRVDDTPM HKAVREALANCLFNADYYGVRGVVVRRTPDKLVFENPGDIRTGVEQMRLGGVSDPRNGLI MKMFSLIDVGERAGTGVPDVFATWANAGLPEPRIEEKFGEADRTILTLMLESDAKSAHNE QIIDNNEQLNGPSEQITDNNEQLNGPSEQITERQRTVLRFVERNPSTTYEDMARAAGVSS ATVRRDAEILIGRGLLKRVGSRKAGHWEVRGREES >gi|316916809|gb|ADCN01000005.1| GENE 55 60733 - 61740 496 335 aa, chain - ## HITS:1 COG:L0310 KEGG:ns NR:ns ## COG: L0310 COG0732 # Protein_GI_number: 15672634 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Lactococcus lactis # 47 335 122 407 407 142 33.0 1e-33 MISEKGAATLTLYPSDSIVIVARSGILRHTIPVAKLRKPATVNQDIKVIQTVDSCDSSWL LQYFIASNKTLLREYGKTGTTVESIDFAKMKSTALMVPYIEEQQAIGSFFSRLDNLITLH QRKYDKLVIFKKSMLEKMFPKDGESVPEIRFAGFTDPWEQRKLGEIVSIGAGAPPSAFSA GNFLYVKVDDLNESSHFQFDSAQRVDANTAVKPIRKGSIIFAKRGAAILGNKVRVLGKTA YIDTNMMALEPRGVDADFLWLFINQTGLYRIADTSTIPQINNKHIEPYPVDIPNMAEQQA IGTFFSRLDDLITLHQRKLELLQDIKKSLLDKMFV Prediction of potential genes in microbial genomes Time: Fri May 13 12:35:20 2011 Seq name: gi|316916804|gb|ADCN01000006.1| Bifidobacterium sp. 12_1_47BFAA cont1.6, whole genome shotgun sequence Length of sequence - 4417 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 256 182 ## BL1783 HsdS specificity protein of type I restriction-modification system - Term 319 - 369 3.1 2 2 Op 1 . - CDS 457 - 3024 2157 ## COG0286 Type I restriction-modification system methyltransferase subunit 3 2 Op 2 . - CDS 3056 - 3991 257 ## COG1715 Restriction endonuclease + Prom 3963 - 4022 2.7 4 3 Tu 1 . + CDS 4208 - 4415 149 ## BL1783 HsdS specificity protein of type I restriction-modification system Predicted protein(s) >gi|316916804|gb|ADCN01000006.1| GENE 1 1 - 256 182 85 aa, chain - ## HITS:1 COG:no KEGG:BL1783 NR:ns ## KEGG: BL1783 # Name: hsdS # Def: HsdS specificity protein of type I restriction-modification system # Organism: B.longum # Pathway: not_defined # 1 85 267 351 406 168 100.0 7e-41 MISEKGAATLTLYPSDSIVIVARSGILRHTIPVAKLRKPATVNQDIKVIQTVDSCDSSWL LQYFIASNKTLLREYGKTGTTVESI >gi|316916804|gb|ADCN01000006.1| GENE 2 457 - 3024 2157 855 aa, chain - ## HITS:1 COG:lin0522 KEGG:ns NR:ns ## COG: lin0522 COG0286 # Protein_GI_number: 16799597 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Listeria innocua # 9 500 10 505 529 366 40.0 1e-100 MNKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGDEDLKGL DENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFA GIFDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMDSRQDYDTLGFIYEYLISNFASNA GKKAGEFYTPSEVSQLMSEIVAWHLAGREEINIYDPTSGSGSLLIHIGQAVARRNGNPND IKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDETKDETYEPLFV DAVVSNPPYSQNWEPPEPGEDIRFEYGIAPKSKADYAFLLHDLYHLRDDGIMTIVLPHGV LFRGGEEGTIRRNLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDHVLVVDASKY FAKDGKNNKLRASDIKRIVDAVSENRDVDKFSRLVSIDEIRQNDYNLNIPRYVDSSETAE SWDVYSTMFGGIPKQDIDALNKYWNVFPGLRQRLFAEENGHSAKLAVQDVREAVNADSGV SAYIQRYREVFTDYPSYLRGELVGNAVNVSIAAEEEVLANDLLHRLADVPLVDAYTAYQV LDDSWQKTIANDLETIQSEGHDAVRKVDANMVVKKKGGKDVEVPDGWAGHILPFDLVQEK LLSADLAEIGTYESRLTEISSEIADILENLDEDDKNSTDAVSEDGDSFVATELKKAVKSI GRDPETDFDRALVNAQRLFDEEREVKKNVKNLRSALDEKTRAVIEGLSDEQADDLLAAKW VEPLQHKLEELPQTAVDELIASVNALNDKYSTTYSDVCEQIEQAEAELGNMLGQLTGNEF DMAGIAELKTLLGGE >gi|316916804|gb|ADCN01000006.1| GENE 3 3056 - 3991 257 311 aa, chain - ## HITS:1 COG:alr7132 KEGG:ns NR:ns ## COG: alr7132 COG1715 # Protein_GI_number: 17233148 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 1 306 1 304 305 240 44.0 2e-63 MTIPRYDEFFVPVLRILADGKIHASGEMLTLLADEFAVTEEECSRLLPSGRSRVLNGRIS WARTYLKKAGLIESPKRGTYRITRPGKEALASGAQIDNDYLERYESFRSFKNLNGDSSTH TTVDGGLEKKSEAYSSEETPDEALDRAFSSINMRLADDLLSEVLKLSPIAFERFVLDLMA KMGYGAFDSASQMTPISGDEGIDGIIMEDKLGFDLIYVQAKRYAEDKTVGRPDIQAFVGA ITGRGGKGLFVTTARFTEKAITYAKRQHIILIDGHKLAQLMIEHGFGVSTRKIYEIKAVD SDVFNEYVDEE >gi|316916804|gb|ADCN01000006.1| GENE 4 4208 - 4415 149 69 aa, chain + ## HITS:1 COG:no KEGG:BL1783 NR:ns ## KEGG: BL1783 # Name: hsdS # Def: HsdS specificity protein of type I restriction-modification system # Organism: B.longum # Pathway: not_defined # 1 69 267 335 406 139 100.0 4e-32 MISEKGAATLTLYPSDSIVIVARSGILRHTIPVAKLRKPATVNQDIKVIQTVDSCDSSWL LQYFIASNK Prediction of potential genes in microbial genomes Time: Fri May 13 12:35:24 2011 Seq name: gi|316916800|gb|ADCN01000007.1| Bifidobacterium sp. 12_1_47BFAA cont1.7, whole genome shotgun sequence Length of sequence - 1902 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 110 - 499 312 ## COG0732 Restriction endonuclease S subunits + Term 688 - 738 0.4 2 2 Op 1 2/1.000 - CDS 492 - 1394 503 ## COG0582 Integrase 3 2 Op 2 . - CDS 1412 - 1819 110 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|316916800|gb|ADCN01000007.1| GENE 1 110 - 499 312 129 aa, chain + ## HITS:1 COG:CC0621 KEGG:ns NR:ns ## COG: CC0621 COG0732 # Protein_GI_number: 16124874 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Caulobacter vibrioides # 4 122 79 199 450 59 29.0 1e-09 MISEKGAATLTLYPSDSIVIVARSGILRHTIPVAKLRKPATVNQDIKVIQTVDSCDSSWL LQYFIASNKTLLREYGKTGTTVESIDFAKMKSTALMVPYIEEQQAIGSFFSRLDNLITLH QRKRLWFAK >gi|316916800|gb|ADCN01000007.1| GENE 2 492 - 1394 503 300 aa, chain - ## HITS:1 COG:lin0524 KEGG:ns NR:ns ## COG: lin0524 COG0582 # Protein_GI_number: 16799599 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 2 300 10 309 309 380 61.0 1e-105 MSFCDYYSQWVDVYKEGAIREVTMKKYKLTQAWLRKLIPDLKLSEFDRVSYQKLINGYAE HHEHQTTMDFHHQLKGAILDAVDEGLIQRDPTRKAIIKGKQPRQKKTKYLNQFELHAVLA DLKLDPIPNWDWLILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTK NASSVRKVQLDWQLIMQLSVLLKNLPDDKPIFVNGKVYNSTANGILARHCKQAGVPVISI HGLRHTHASLLLFAGVSIASVSKRLGHASMNTTQETYLHVIRELENKDVDIVMRALSTLI >gi|316916800|gb|ADCN01000007.1| GENE 3 1412 - 1819 110 135 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 1 117 70 186 403 125 50.0 2e-29 MSGYYLLRQGEFAYNKSTSADSPWGAIKRLTRYEKGCVSTLYICFALLNANPDYLVTYYE TNRWHKAVQMIAAEGARNHGLLNIAPDDFFDTMVSLPESQAEQQTIGAFFSRLDSLITLH QRKRLSIRQRSPVWS Prediction of potential genes in microbial genomes Time: Fri May 13 12:35:34 2011 Seq name: gi|316916778|gb|ADCN01000008.1| Bifidobacterium sp. 12_1_47BFAA cont1.8, whole genome shotgun sequence Length of sequence - 27777 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 15, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 450 69 ## COG0732 Restriction endonuclease S subunits - Prom 559 - 618 3.3 - Term 695 - 758 18.4 2 2 Tu 1 . - CDS 802 - 4113 5152 ## COG0060 Isoleucyl-tRNA synthetase 3 3 Op 1 . + CDS 4631 - 5842 1282 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 4 3 Op 2 . + CDS 5882 - 6502 608 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 6513 - 6550 8.7 - Term 6501 - 6560 -0.6 5 4 Tu 1 . - CDS 6562 - 7572 880 ## COG1609 Transcriptional regulators - Prom 7631 - 7690 2.4 6 5 Tu 1 . - CDS 7735 - 7986 230 ## BL1773 hypothetical protein - Term 7999 - 8031 -0.6 7 6 Tu 1 . - CDS 8104 - 9072 689 ## COG0524 Sugar kinases, ribokinase family 8 7 Tu 1 . - CDS 9298 - 10728 1764 ## COG3069 C4-dicarboxylate transporter 9 8 Op 1 . - CDS 10830 - 11750 768 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 10 8 Op 2 1/0.000 - CDS 11815 - 12276 347 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 12359 - 12418 4.4 11 8 Op 3 . - CDS 12464 - 13489 389 ## COG1609 Transcriptional regulators - Prom 13526 - 13585 1.6 - Term 13584 - 13650 18.1 12 9 Op 1 35/0.000 - CDS 13669 - 15684 185 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 13 9 Op 2 4/0.000 - CDS 15681 - 17639 2772 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 14 9 Op 3 . - CDS 17636 - 18169 557 ## COG1846 Transcriptional regulators - Prom 18233 - 18292 1.9 - Term 18317 - 18363 14.3 15 10 Tu 1 . - CDS 18380 - 20653 3103 ## COG1472 Beta-glucosidase-related glycosidases + Prom 20779 - 20838 1.9 16 11 Tu 1 . + CDS 20901 - 21488 794 ## BLD_1944 AcrR-type transcriptional regulator + Term 21545 - 21588 7.5 17 12 Op 1 . - CDS 21604 - 22524 1385 ## COG0657 Esterase/lipase 18 12 Op 2 . - CDS 22559 - 24235 2191 ## COG2936 Predicted acyl esterases 19 12 Op 3 . - CDS 24292 - 25557 1926 ## COG0477 Permeases of the major facilitator superfamily - Prom 25661 - 25720 4.2 + Prom 25632 - 25691 2.9 20 13 Tu 1 . + CDS 25791 - 26405 774 ## BLD_1940 AcrR-type transcriptional regulator 21 14 Tu 1 . - CDS 26424 - 27239 355 ## BL1762 hypothetical protein - Prom 27259 - 27318 1.7 + Prom 27255 - 27314 2.2 22 15 Tu 1 . + CDS 27349 - 27775 347 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316916778|gb|ADCN01000008.1| GENE 1 3 - 450 69 149 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 4 149 21 167 403 165 51.0 3e-41 MPAWEQRKLGDIAERVTRKNENNESDLPLTISAQHGLIDQRLFFNAQVASRDMSGYYLLR QGEFAYNKSTSADSPWGAIKRLTRYEKGCVSTLYICFALLNANPDYLVTYYETNRWHKAV QMIAAEGARNHGLLNIAPDDFFDTMVSLP >gi|316916778|gb|ADCN01000008.1| GENE 2 802 - 4113 5152 1103 aa, chain - ## HITS:1 COG:MT1587 KEGG:ns NR:ns ## COG: MT1587 COG0060 # Protein_GI_number: 15841003 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 1095 1 1026 1041 1122 53.0 0 MSENVYPKANEGGETAHVAPNPSFPDMEETVLDYWDKDDTFQKSVERNPSGDHSQNEFVF FDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGID SVDQIEKMGIDKFNDACRASVLKYTNEWQNYVHRQARWVDFEHGYKTLNIPYMESVMWAF KQLYDKGLAYQGYRVLPYCPKDRTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEDDAYA VFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYLGKDLLPHYEKELGENYEVV RELKGSELEGRRYYPVFPYFAGDEAESEGHVPGPNGYTIFTADYVDTVEGTGLVHQAPYG EDDMNTLNAKGIKSTDVLDDGCRFTAQCPDYEGDFVFDANLPILRNLRAGDGPLAEIPEE RRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPGNVKD GQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDKDG NINMHRPWIDNLVRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQH FPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDV NGVFDKYGSDAMRWFLMSSPILRGGNLIVTADGIRDTVRQVMLPVWSSYYFFTLYANAAN GGAGFDARQLRADEVAGLPEMDRYLLARTRRLVLAAEKSLNEFAISDACDAVSDFIDVLT NWYIRNTRDRFWNEDASAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWP FVVDEKTGEDTELGRVLVDDPALVDAMEKVREVVSGTLSLRKAAKIRVRQPLSKLTVVVE NVDAVKSYDELLKSELNIKNIEFSTLEDAAAHGLKIVHELRVNARVAGPRLGKQVQFAIK ASKSGDWHVDAASGAPVVSTPSGDLALVEGEYELINRVEEENATEAAASVSASLPTGGFV ILDTALDADLLAEGYARDVIRSVQDARKAADLDIADRISLVLTVPADDVAKVEQFRDLIA HETLATSFEVKEGAELSVEVVKA >gi|316916778|gb|ADCN01000008.1| GENE 3 4631 - 5842 1282 403 aa, chain + ## HITS:1 COG:CAC2970 KEGG:ns NR:ns ## COG: CAC2970 COG1168 # Protein_GI_number: 15896223 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Clostridium acetobutylicum # 3 397 2 378 384 256 37.0 8e-68 MTYDFTSIMNRHGMDSIAVDGLGTDPGFAPDPPREGFDVIPMWVADMNFPTVPTIPQAII ERAKHPAYGYFSPTDDYYSSIIDWQSTRNGVTGLTREAIGYENGVLGGVISALTAFAAPG DGVLLHSPTYIGFTRSIENNGYRIVHSPLTLDERGVWRMDYEDMDRKLKEHHIHVAVFCS PHNPCGRVWERWEIEKAMEVYRANDCVVISDEIWSDLTLGNHQHIPTQSVSEDARNRTVA FYAPSKTFNLAGLVGSYHIIYNPTLRDRIVAKSSKCHYNDMNVLSMHALIGAYRPEGHEW LDELKAVLTGNVDYAYDYITKHFQGVSLAKPEGTYMLLLDCEQWCERHGLSLPELEKRGW DVGVAWQDGSMFQAPYSIRVNLALPLSRVKEAMRRLDQYVFNA >gi|316916778|gb|ADCN01000008.1| GENE 4 5882 - 6502 608 206 aa, chain + ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 45 202 854 1012 1014 142 43.0 6e-34 MPPTRFVPVGGIRHTLAEPGETQVAVRYEVDAASGRVHLTARYAGATDAPTLPAFGLEWT LPKQYENLRFYGLGPEETYHDRLHGGKLGIFERTAAEDNAPYLVPQETGNHEDVRWAEVL DAQGHGMRISQAGSEHFAASLLPYSSLMLEEATHQNELPPVRHTFLRLLAAQMGVGGDDS WGAPVHEQYQLPADRAYTLDVNLELF >gi|316916778|gb|ADCN01000008.1| GENE 5 6562 - 7572 880 336 aa, chain - ## HITS:1 COG:BS_lacR KEGG:ns NR:ns ## COG: BS_lacR COG1609 # Protein_GI_number: 16080470 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 331 1 328 330 212 37.0 1e-54 MVTMKEIAQKSGFSQATVSRLLNGDPTLSVKEETRRRIIEVSEQLGYATGSRRIALPRRV AVLDNATREEELADAYFDELRSVLGDNARAQHMELTSFSHIDDLIANAGDFDGFISIGPS VLSSDKLLKLHLVLPYGVFIDINPAPSLFDSVQPDLSQTILDALDVLVSSGKRRIGYIGG TGFTMGLHEYPEDSRLTAFRNWTERLGLDAEGLIYAQGAFTVDTGRTLGEKAANDHRDDM PDAFIVAADTIAVGVLQAFIAAGVLVPRDTSVISINNQGIAQYTSPTLTSYDIDQNELAD TAITMLAEAISSRRTLHHHTFISTTLVVRDSFVPAR >gi|316916778|gb|ADCN01000008.1| GENE 6 7735 - 7986 230 83 aa, chain - ## HITS:1 COG:no KEGG:BL1773 NR:ns ## KEGG: BL1773 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 83 37 119 119 140 97.0 1e-32 MHQGNGGGLGGTTATHNSIEYSNESYDAKTQTVTMHAVIDWSDPYRFGDSTGSFTAPDIT VVFDKSGKIQRIDSTVWGFPPAR >gi|316916778|gb|ADCN01000008.1| GENE 7 8104 - 9072 689 322 aa, chain - ## HITS:1 COG:Cgl1331 KEGG:ns NR:ns ## COG: Cgl1331 COG0524 # Protein_GI_number: 19552581 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Corynebacterium glutamicum # 16 311 9 297 307 167 40.0 3e-41 MSASCLDLLDHLHGSVSVVGSMNVDYTVVTERLPKPGETVNGGPLTLLPGGKSANQASAA ARIGAQVRMFGAVGEDTNADFLLEHLRDAGVDTSHIAAVAGPSGTTVITVDANGENTIVY SAGSNGEVSVDYVRQSSDALVAADVLGLCLESPMETVTACARLCHDAGLKVLLNDSPFVA ELPAELIEASDILLVNEHEMAQLLDIAEPDDDDWDGLDWSDVARQMHDFGFNQAVITLGG DGSVVIDGDDIYRIAPVAVAAIDTTGCGDAFMGTVLAGLASGHALADSAQLASYVSAYAA TGFGAQASYGTAAQIRERFGTN >gi|316916778|gb|ADCN01000008.1| GENE 8 9298 - 10728 1764 476 aa, chain - ## HITS:1 COG:VCA0665 KEGG:ns NR:ns ## COG: VCA0665 COG3069 # Protein_GI_number: 15601423 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Vibrio cholerae # 80 476 81 459 459 196 40.0 7e-50 MELVIMYLVAIAAVGIVGFMLVKKMDIKISLFLIGIVLMYIALLMGKDISFTDFVSSGVT WLDPFKVVGDQFVSTLTSAGFIILILGGYTGYMSHIGANEVTVSVLAKPIAHIKSPYILV PITFLLGNLLSLVIPSASNLAIILMATLYPVLRQAGMSLLSAAAVIATTATIMPTPLGSD NVAIAAELAKTDMFSGLTASDYVFRYHVLVSIPTLLVMALAHYFWQKFMDKRAGSDLTDG DVDLAEVKAVEGSALYRTVYAILPLLPIIMLLIVFAITSTTGAKIDLSVELASILSFVIA IICELIRTRKGKETLAGTESFFKGMGGAMPIVALLVAASVFVVGLKSIGLITELQNAMTG LSGSGMGFVLPLILVGLTALIVLLSGSGTALFFAMVPLMVPLAAAAGINVLAVSIPMGLA GNLLRAVSPVSAVVMIVAGSIKKSPIDIVRRTSVPMIAGVIVMFILSMAIFLPMGA >gi|316916778|gb|ADCN01000008.1| GENE 9 10830 - 11750 768 306 aa, chain - ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 6 304 7 304 306 269 49.0 5e-72 MKQIPLIIDTDPGIDDAVAIALAVFNPRFDVRLITTVAGNVSIEATTTNALKLMAYYGKD VPVARGAAEPLIRQLDDASDIHGKTGMEGFDFPEPKTELLLDKHAVEAMHDEIMASAEPV TVMPIGPLTNIALLLKTFPEVKSRIERIVLMGGSVTRGNKGVMAEFNIFVDPEAAKIVLT SGLDITMATLDAGLGTVIPPEKTAQLKDMGKVGLMAHDLFQRYRKRSFGTGLKMYDACAV ACLLEPDLFDMTKAFVDVEIAGELTAGCTVVDLKGYLKREPNATVTTGVHADRFCDWFMD GIAHCA >gi|316916778|gb|ADCN01000008.1| GENE 10 11815 - 12276 347 153 aa, chain - ## HITS:1 COG:CAC3256 KEGG:ns NR:ns ## COG: CAC3256 COG0454 # Protein_GI_number: 15896501 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 5 136 4 137 140 78 30.0 6e-15 MCISIQQDALTAELYVSVRDAVGFYHYDREDARMALDGGLYSVVAYVDGQVAGIGRVVGD GRIAFFIKDLVVLPQYQGGGVGTAVLRALITRIREHCCNHAYIGLMATPGKESFYEEHGF LRRPAPGYGSGLVQFVDPVPLSAAESTATSGIK >gi|316916778|gb|ADCN01000008.1| GENE 11 12464 - 13489 389 341 aa, chain - ## HITS:1 COG:Cgl1222 KEGG:ns NR:ns ## COG: Cgl1222 COG1609 # Protein_GI_number: 19552472 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Corynebacterium glutamicum # 5 334 14 335 369 147 31.0 4e-35 MAFVTLKDVAQRAGVSAAAVSQILHNKGRFSSDTRQLVLNTVEEMGYVPDQRARSMRSSD TKTVGLLVPDLRNPYFADLVSSMEDELYARGYSTLIGTSAETVERQDAFIDNLLGQRIDG AIVVPQGVNSPGMQSLIARELPLVFVDRLVSGVNSVPFVVSDPYPGVCEAVAELVRLGHR HIGFVSHSSLGSSNINEREAAFRSAVAQVTQLGEGTAAVVDCDSTYVSREAGLNELVRAG VTAIICAYSPDMITMIGLLHDRGIDIGSEMSVISFDDIAVFRLLTPQVAIISQQAEDMGR QGVDMLLDMIINNDCSRGESRYVPSSFVLRDSVGAPMWRVP >gi|316916778|gb|ADCN01000008.1| GENE 12 13669 - 15684 185 671 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 444 668 34 265 329 75 29 3e-13 MSNDQSFKNRKPAMGKAEPGTIKRIFSYIFQYKWRVIAIVVCILVGAAAQAGSALFLQSL IDTYILPMVGESNPDWAPLLRAISLMACLYVAGIVASWLWQWLIVTVEQGTLKKIRDDMF AHQQKLPIRYFDSHEHGDIMSHYTNDTDTLRQAISQSFPQMFSSIISAVAALLSMLWLSI PFTAFVIVFTVLLYFIVRKIVSRSGRYFVKQQQWIGDVNAFVEESVNGQKVIKVFNHEDA TQNTFDEKNEELFEASAEANTWGNVTMPVVGNMGYLLYILLAIVGAAVSLAGVNDIGLTG VKPLTLGTLVSLLTLSRSFINPIGQVSQQLTMVMMALAGASRIFKLMDEPIEEDKGTVTL VNVELGEDGRTMTEVDHETGHWAWKREVGDDGTRSLKAAEKLKGSAREVAMKAKEQAITS PDGRLTLLRGDVRFTNVTFGYNPDKPVLHDITWFAKPGQKIALVGATGAGKTTVTNLINR FYDIQHGQILYDGISVAGIKKPDLRRSLGIVLQDVNLFTGTVMDNIRYGRLNATDEECIE AARLVNADSFIRMLPEGYNTVLEGDGSGLSQGQRQLISIARAAVADPPALILDEATSSID TRTEEVVQAGMDNLMKGRTVFVIAHRLSTVRNSDVIMVLDHGNIIERGSHDELIAQKGEY YQLYTGAVELE >gi|316916778|gb|ADCN01000008.1| GENE 13 15681 - 17639 2772 652 aa, chain - ## HITS:1 COG:CAC3414 KEGG:ns NR:ns ## COG: CAC3414 COG1132 # Protein_GI_number: 15896655 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 23 606 1 576 577 623 53.0 1e-178 MSDTAEAIAQARKAVEPDKPKHVLRTLGHSIREYKKASILAPVFVAVEGILEILIPTIMA SLIDEGITGGSMPATVKFGVILLVCAMVSLGAGFLSGKYAAVAGAGFAKNLRKDQFEKVQ GFSFTNIDRFSTGSIVTRLTTDVTNLQNAYMMIIRLGVRAPIMVVVSWLFSFRISPSISM VFLACIPILAIGLCGLAVLVHPVFERVFHTYDALNNVVDENLQGIRVVKSYNRESFEVSK FGRISQRIFKDFTKAERIMSFNSPLMMICIYGSMILIAWMGAQQIVASGNNPAVGLTTGD LTALVTYAMQILMAMMMLSMIFVMVIISQASAERICQVLQEESTVQNPAQPVTDMADGSI EFDHVTFRYSDSSEKPVLDDINLKIRSGMTVGIVGGTGSAKSSLVQLVPRLYDVSSGSLK VGGVDVRDYDLEALRDQVAMVLQKNVLFSGTIAENLRWGNPNATDEEIRHAAQLAQADGF VQEFPDKYDTYIEQGGTNVSGGQRQRLCIARALLKKPKILILDDSTSAVDTKTDKLIRSA FHNEIPDTTKIIIAQRVASVQESDMILVMDSGRIMASGTHDELLVTCDEYRSIYESQTKN QAQPEELAAAEQAAESSTAEPSETVTVTVPMPTADTSAADTNAADTKEGEAR >gi|316916778|gb|ADCN01000008.1| GENE 14 17636 - 18169 557 177 aa, chain - ## HITS:1 COG:CAC3413 KEGG:ns NR:ns ## COG: CAC3413 COG1846 # Protein_GI_number: 15896654 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 28 141 27 141 143 62 38.0 4e-10 MDQHILSIEMRAVTKAVDRYLGESMPLSAKETTGGNAHIIMFLARNRNREIYQHTIEQKF CITRSTASRVLALMEKKGLIARESVAHDARCKRIVLTDKADAIVADLKANGERVERLLVD GFSESEKAALRDYVSRMRANIDRAQHEFEHQTLPQSPVVMAPDQDGAEVANTKEENE >gi|316916778|gb|ADCN01000008.1| GENE 15 18380 - 20653 3103 757 aa, chain - ## HITS:1 COG:YPO2803 KEGG:ns NR:ns ## COG: YPO2803 COG1472 # Protein_GI_number: 16123001 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Yersinia pestis # 2 664 28 705 793 440 39.0 1e-123 MSESTYPSVKDLTLEEKASLTSGGDAWHLQGVESKGIPGYMITDGPHGLRKSLASSAGET DLDDSVPATCFPPAAGLSSSWNPELIHKVGEAMAEECIQEKVAVILGPGVNIKRNPLGGR CFEYWSEDPYLAGHEAIGIVEGVQSKGVGTSLKHFAANNQESDRLRVDARISPRALREIY FPAFEHIVKKAQPWTIMCSYNRINGVHSAQNHWLLTDVLRDEWGFEGIVMSDWGADHDRG ASLNAGLNLEMPPSYTDDQIVYAVRDGRITPAQLDRMAQGMIDLVNKTRAAMSIDNYRFD VDAHDEVAHQAAIESIVMLKNDDAILPLNAGPVANPSAMPQKIAVIGEFARTPRYQGGGS SHITPTKMTSFLDTLAERGIKADFAPGFTLDLEPVDPALESEAVETAKNADVVLMFLGLP EAAESEGFDRDTLDMPAKQITLLEQVAAANQNVVVVLSNGSVITVAPWAKNAKGILESWL LGQSGGPALADVIFGQVSPSGKLAQSIPLDINDDPSMLNWPGEEGHVDYGEGVFVGYRYY DTYGKAVDYPFGYGLSYATFEITGVAVAKTGANTATVNATVTNTSDVDAAETVQVYVVPG KADVARPKHELKGFTKVFLKAGESKTVTIDLDERAFAYWSEKYNDWHVEAGEYAIEVGVS SRDIADTVAVALDGDGKTQPLTEWSTYGEWEADPFGAKIVAAVAAAGEAGELPKLPDNAM MRMFLNSMPINSLPTLLGEGGKKIAQFMVDEYAKLSK >gi|316916778|gb|ADCN01000008.1| GENE 16 20901 - 21488 794 195 aa, chain + ## HITS:1 COG:no KEGG:BLD_1944 NR:ns ## KEGG: BLD_1944 # Name: not_defined # Def: AcrR-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 195 1 195 195 393 100.0 1e-108 MNAPSPTDTDRRTAILDAAVESFGKLGYYGTSLQRIATEVGLTKAGVLHYVGSKEGLLKL ALTEEYDRVTESINAAMVAQERPLIADMWRQVVAVNNKRPALVHMFSTLSTEALDPAHPA HDYFADRERRTVTMALNINWAVPEGVNVEHVLQAGFSMMDGLQLRWLRTPGQNLNTMWAD CEDVLMPLPLWDGYR >gi|316916778|gb|ADCN01000008.1| GENE 17 21604 - 22524 1385 306 aa, chain - ## HITS:1 COG:DR0133 KEGG:ns NR:ns ## COG: DR0133 COG0657 # Protein_GI_number: 15805172 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 22 160 18 150 296 78 36.0 2e-14 MISQEARDLFAANVKAMTAGDAAHLASQLLPDDVSRLKDIAYVHDGDAAHLLDIYTLADA EEGAALPVIVDFHGGGLYYGNKENNECRDMLLARQGFAVVNANYRLVPSVSFPAQLADAM AVLDWIRDHGAEYGLDTERVCVTGDSAGGALALYLCAANGSTQLAGALGLWQSGIEVHAL VVTSGMFRLQGGVHANALSYYMEGYLQTPADHIKVNPYLDLDKLIVDGDVPPIYMITSVE DFIADNTYELARILHARHKDHAMSVWPKGRERVLGHVFNIVQAGDPEAGEAHQVICDIAD YCKRYI >gi|316916778|gb|ADCN01000008.1| GENE 18 22559 - 24235 2191 558 aa, chain - ## HITS:1 COG:lin2898 KEGG:ns NR:ns ## COG: lin2898 COG2936 # Protein_GI_number: 16801958 # Func_class: R General function prediction only # Function: Predicted acyl esterases # Organism: Listeria innocua # 41 556 17 553 555 205 30.0 2e-52 MSDADDFMTRYLNNITSQYESSRFKPEYEPAEPETTKVTCRDGVELTVDIFRPATPGPYP TIVVRCPYPQQVELWKLHGEHLNRRGYAMVCEWCRGTYTSGGTWEPNVNERNDGADLLAW CEHQDWIDVIGLWGTSYLSLTCWTVADITTPKVASICANHYGTDRFASAYQKGSFRCDVL TAWAMQNAGYPVDADYMKSALHLPQMSVDEDMWGGRLDWYRDWISHPKGADAYWDEGFWG LLKSIPSKVKVPMFIHEGWFDHHLGSALTGYAALNEQVKEHSWLRIGCWNHYFLNPLEGL EPKHLDAAEVPAALEWFDLTLKRKQTPMRQVEYYEIGSDSWHVADSWPLPSAGADEVRLY LKSGELTAEAPQAASAAEYDYDPANPVMTRGGEALLTTMDEIGARIQPEPGWRDDVITFE SEPLDHDLHIQGAISVDLYVSSSAPDTAFTAKLMCVDPDGTARNYRTSITTIGLDTPDAA PYKPGEIHRVSIDMWGICWMVPAGSRIRCDISSSDFPQYSVHTNHAGLWSEQTGTQVAHQ TIHMGGATPSAIVLPVRG >gi|316916778|gb|ADCN01000008.1| GENE 19 24292 - 25557 1926 421 aa, chain - ## HITS:1 COG:BH2694 KEGG:ns NR:ns ## COG: BH2694 COG0477 # Protein_GI_number: 15615257 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 44 403 40 398 418 65 21.0 2e-10 MSTQTKSSSRPWLVFIGCCVLSLVGFGLIVNTPGLYFTVLGETLNVSRTQIALASSIMAI AGAVTMLFAGKVMKMLDSRILISVCIAGVAALFLAQSFFNAVWQFYISFALMGILYIIPI SLAPSVLLANWFESKLGMVMGIALGLSGIGGTIFNPVVSWFITNLGWQTSYRLTALILVI CILPFSLLVFKFRPDEAKGEQAYGHIVSAAVADDAQAAGELPGIESKKAYRTPTFVLLVL VSVLLQIVAALVQHVSSHEIAHGLTLEQGALVVSGIMFGAAIGKATIGILLDYLKPELTI VIYSAIGLAGWGLMAVATTPTPAIAAGFMAGLGQGVVLVALPWVIRKSFGQRDYSEILSI VSMFGAVASAIAVTAHGAVFDATGSYVPSLVGNMALYVVAAACMVIGFRMRPFKEITKQA K >gi|316916778|gb|ADCN01000008.1| GENE 20 25791 - 26405 774 204 aa, chain + ## HITS:1 COG:no KEGG:BLD_1940 NR:ns ## KEGG: BLD_1940 # Name: not_defined # Def: AcrR-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 204 1 204 204 401 100.0 1e-111 MGTRGEERLKAITDAATEVVAERGYYGMTIQEVSDRVGITQAGLLKYVKNKNGLLMLVLR RYEDSSEAGDYIQSKLALTPEQRELSPLLMPEYYRTIAEDTMKRPQLTQLYLVLRAEAID PNHPAHEYYAQRGGRLRAQIGSYPWKLPPEYNTPQKIGLLSMCVGSAMEGLQSRWLGEPD IDFMSSWSQYENILFPRPHWNGYR >gi|316916778|gb|ADCN01000008.1| GENE 21 26424 - 27239 355 271 aa, chain - ## HITS:1 COG:no KEGG:BL1762 NR:ns ## KEGG: BL1762 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 4 187 1 184 187 352 97.0 9e-96 MSFVTRPILCGGVGCGFEMRSQLPLALDSSARTNTAKAGCLAQWLGDTVGPTEATTDSTS KVVDDSHAEDCKTWLFISGGTSGSDVPPLFFGKGGAVNITKTKEYALAQAHAAALLYHER LEGRSIKIHCEDDLTLAIVWDSGNFAHLCGLDYYLDDSKRCRLPPRKLYEDLLRGRRISP KRVSPHGDVQWLKKKADVLTDAMDMSKVTHVVVSGNSRIVLYAGNEVWCIGLGRMRDGRY YPQSLVKKSFDEVRKTGTVTHIVAAVETMGL >gi|316916778|gb|ADCN01000008.1| GENE 22 27349 - 27775 347 142 aa, chain + ## HITS:1 COG:Ztra8.2 KEGG:ns NR:ns ## COG: Ztra8.2 COG2826 # Protein_GI_number: 15802345 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli O157:H7 EDL933 # 6 142 71 184 396 61 34.0 6e-10 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCPETIY Prediction of potential genes in microbial genomes Time: Fri May 13 12:36:08 2011 Seq name: gi|316916715|gb|ADCN01000009.1| Bifidobacterium sp. 12_1_47BFAA cont1.9, whole genome shotgun sequence Length of sequence - 63825 bp Number of predicted genes - 66, with homology - 63 Number of transcription units - 34, operones - 13 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 486 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 343 - 397 0.2 2 2 Tu 1 . - CDS 408 - 944 182 ## BL1101 hypothetical protein + Prom 905 - 964 2.2 3 3 Op 1 56/0.000 + CDS 1150 - 1521 622 ## PROTEIN SUPPORTED gi|23465669|ref|NP_696272.1| 30S ribosomal protein S12 4 3 Op 2 51/0.000 + CDS 1527 - 1997 785 ## PROTEIN SUPPORTED gi|23335707|ref|ZP_00120940.1| COG0049: Ribosomal protein S7 5 3 Op 3 30/0.000 + CDS 2029 - 4152 3476 ## COG0480 Translation elongation factors (GTPases) + Term 4183 - 4230 11.2 + Prom 4211 - 4270 1.6 6 3 Op 4 . + CDS 4325 - 5524 1276 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 5570 - 5609 8.2 + Prom 5638 - 5697 2.0 7 4 Tu 1 . + CDS 5735 - 6463 785 ## BL1096 hypothetical protein 8 5 Tu 1 . + CDS 6600 - 7418 681 ## COG0583 Transcriptional regulator 9 6 Tu 1 . - CDS 7509 - 7589 65 ## 10 7 Tu 1 . + CDS 7588 - 8652 1746 ## COG2855 Predicted membrane protein 11 8 Op 1 . - CDS 8709 - 9188 528 ## Blon_1919 hypothetical protein 12 8 Op 2 . - CDS 9269 - 9634 286 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 13 8 Op 3 . - CDS 9634 - 10170 511 ## BLD_0845 integral membrane protein for chromosome condensation 14 9 Tu 1 . + CDS 10574 - 11617 1374 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases + Term 11741 - 11772 -0.7 + Prom 11825 - 11884 1.7 15 10 Tu 1 . + CDS 11988 - 12179 206 ## gi|239622259|ref|ZP_04665290.1| predicted protein 16 11 Tu 1 . - CDS 12200 - 13579 1277 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 13670 - 13729 3.4 + Prom 13601 - 13660 3.5 17 12 Tu 1 . + CDS 13780 - 13893 58 ## - Term 13628 - 13689 -0.7 18 13 Tu 1 . - CDS 13843 - 14013 191 ## BL1087 MarR-type transcriptional regulator 19 14 Op 1 . + CDS 14403 - 14780 216 ## PFREUD_01150 transcriptional regulator, ArsR family protein 20 14 Op 2 . + CDS 14777 - 17281 2214 ## COG0178 Excinuclease ATPase subunit 21 14 Op 3 . + CDS 17339 - 18697 1637 ## COG0534 Na+-driven multidrug efflux pump 22 14 Op 4 . + CDS 18714 - 19397 637 ## COG2231 Uncharacterized protein related to Endonuclease III 23 15 Tu 1 . + CDS 19562 - 20233 807 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 24 16 Tu 1 . - CDS 20243 - 20506 308 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 20747 - 20806 1.8 + Prom 20367 - 20426 1.6 25 17 Op 1 . + CDS 20671 - 21759 1362 ## COG0679 Predicted permeases 26 17 Op 2 . + CDS 21782 - 22369 724 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 22437 - 22478 10.6 - Term 22418 - 22473 14.8 27 18 Tu 1 . - CDS 22551 - 23987 2134 ## COG0174 Glutamine synthetase - Prom 24220 - 24279 1.9 + Prom 23854 - 23913 1.7 28 19 Tu 1 . + CDS 24005 - 24160 58 ## gi|291456404|ref|ZP_06595794.1| hypothetical protein BIFBRE_03612 + Term 24240 - 24297 12.2 - Term 24228 - 24284 12.2 29 20 Op 1 . - CDS 24306 - 25088 1330 ## BLD_0827 hypothetical protein 30 20 Op 2 . - CDS 25172 - 26662 588 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Term 26731 - 26757 0.3 31 21 Tu 1 . - CDS 26810 - 27433 855 ## BLJ_0627 hypothetical protein - Prom 27515 - 27574 1.7 + Prom 27384 - 27443 2.3 32 22 Tu 1 . + CDS 27525 - 28892 2230 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 28915 - 28983 10.0 + Prom 28926 - 28985 2.9 33 23 Op 1 4/0.000 + CDS 29192 - 29791 990 ## COG4721 Predicted membrane protein 34 23 Op 2 34/0.000 + CDS 29791 - 31266 226 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 35 23 Op 3 . + CDS 31263 - 32090 691 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 36 24 Op 1 4/0.000 + CDS 32286 - 33164 171 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 37 24 Op 2 40/0.000 + CDS 33218 - 34285 1525 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 38 24 Op 3 . + CDS 34293 - 36902 3943 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 39 24 Op 4 . + CDS 36933 - 37619 773 ## BLD_0817 hypothetical protein + Prom 37632 - 37691 4.3 40 25 Op 1 11/0.000 + CDS 37718 - 38812 1504 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 41 25 Op 2 10/0.000 + CDS 38809 - 39984 1578 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) + Term 39989 - 40015 1.0 42 25 Op 3 13/0.000 + CDS 40056 - 41012 1034 ## COG0548 Acetylglutamate kinase 43 25 Op 4 9/0.000 + CDS 41002 - 42297 1582 ## COG4992 Ornithine/acetylornithine aminotransferase 44 25 Op 5 4/0.000 + CDS 42341 - 43306 1545 ## COG0078 Ornithine carbamoyltransferase 45 25 Op 6 4/0.000 + CDS 43303 - 43815 603 ## COG1438 Arginine repressor + Prom 43819 - 43878 2.6 46 25 Op 7 16/0.000 + CDS 43898 - 45136 1906 ## COG0137 Argininosuccinate synthase + Term 45184 - 45210 1.0 47 25 Op 8 . + CDS 45581 - 47053 2024 ## COG0165 Argininosuccinate lyase + Term 47064 - 47095 4.1 + Prom 47200 - 47259 2.4 48 26 Op 1 . + CDS 47402 - 47596 261 ## BLJ_0644 thiamine biosynthesis protein ThiS 49 26 Op 2 5/0.000 + CDS 47608 - 48477 1299 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 50 26 Op 3 . + CDS 48554 - 49363 776 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 51 26 Op 4 . + CDS 49420 - 49776 154 ## COG0607 Rhodanese-related sulfurtransferase - Term 49709 - 49743 -0.5 52 27 Tu 1 . - CDS 49773 - 50069 170 ## + Prom 49797 - 49856 2.1 53 28 Op 1 1/0.200 + CDS 49938 - 50471 576 ## COG1418 Predicted HD superfamily hydrolase 54 28 Op 2 . + CDS 50468 - 51235 943 ## COG4905 Predicted membrane protein + Term 51265 - 51300 -0.2 55 29 Op 1 . + CDS 51361 - 52683 631 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 56 29 Op 2 . + CDS 52711 - 54492 2726 ## BLD_0801 hypothetical protein 57 29 Op 3 . + CDS 54501 - 55541 1288 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 58 29 Op 4 . + CDS 55546 - 55692 194 ## BLJ_0653 hypothetical protein 59 30 Tu 1 . + CDS 55798 - 56571 688 ## COG1189 Predicted rRNA methylase 60 31 Tu 1 . - CDS 56553 - 57227 449 ## BLD_0797 hypothetical protein 61 32 Op 1 17/0.000 - CDS 57366 - 58028 973 ## COG0569 K+ transport systems, NAD-binding component 62 32 Op 2 . - CDS 58079 - 59545 1504 ## COG0168 Trk-type K+ transport systems, membrane components - Prom 59636 - 59695 1.7 + Prom 59704 - 59763 3.1 63 33 Op 1 17/0.000 + CDS 59792 - 60814 1110 ## COG0061 Predicted sugar kinase 64 33 Op 2 . + CDS 60814 - 62640 2183 ## COG0497 ATPase involved in DNA repair 65 33 Op 3 . + CDS 62670 - 63317 842 ## COG0637 Predicted phosphatase/phosphohexomutase - Term 63313 - 63353 1.0 66 34 Tu 1 . - CDS 63395 - 63802 462 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|316916715|gb|ADCN01000009.1| GENE 1 4 - 486 209 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 141 176 312 317 85 40 9e-16 GHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTH DNGTEFAHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVR EIVDEINNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK >gi|316916715|gb|ADCN01000009.1| GENE 2 408 - 944 182 178 aa, chain - ## HITS:1 COG:no KEGG:BL1101 NR:ns ## KEGG: BL1101 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 150 1 150 155 285 100.0 5e-76 MLACYIRRAVGTHEYLYYDSSGQRRAEPQLTGLGTSCAPVLFLSSQRNIPMRRKTHTQLF SQRNIPGNASQKGNATQQVPPRRLCHTGAPPRRLHYVSFHHIRFCVICFQHILVLFHIRW EPLATRPLCRITLPLSALPIIAKPPSRNARPDVYLEVQHPCWSCNSNSSSANASAGVR >gi|316916715|gb|ADCN01000009.1| GENE 3 1150 - 1521 622 123 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23465669|ref|NP_696272.1| 30S ribosomal protein S12 [Bifidobacterium longum NCC2705] # 1 123 1 123 123 244 99 1e-63 MPTIEQLVRKGRQAKPKKSKTLALKGSPLRRGVCTRVYTTTPKKPNSALRKVARVRLSSG IEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTQGVKDRKQGRSLYGAK KAK >gi|316916715|gb|ADCN01000009.1| GENE 4 1527 - 1997 785 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23335707|ref|ZP_00120940.1| COG0049: Ribosomal protein S7 [Bifidobacterium longum DJO10A] # 1 156 1 156 156 306 100 1e-82 MSRKGPSKKHVVLPDPIYGSTVVAQLINKILLDGKKSIAEDIVYSALDMVKEKSDQEPVA VLKRALDNIRPSLEVRSRRVGGATYQVPVEVKPNRANTLSLRWLTDFSRARREKTMAERL ANEILDASNGLGASVKRREDTHKMAEANKAFAHYRW >gi|316916715|gb|ADCN01000009.1| GENE 5 2029 - 4152 3476 707 aa, chain + ## HITS:1 COG:ML1878 KEGG:ns NR:ns ## COG: ML1878 COG0480 # Protein_GI_number: 15828005 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Mycobacterium leprae # 5 707 7 701 701 926 65.0 0 MAEEISDLHDVRNIGIMAHIDAGKTTTTERILFYTGKNYKIGETHDGASTMDFMAQEQER GITIQSAATTCFWSRQSHDTKDKFQINIIDTPGHVDFTAEVERSLRVLDGAVAVFDGKEG VEPQSETVWRQADKYGVPRICFINKMDKLGANFYYSVDTIKEKLGATPIVMQLPIGSEND FTGVVDLVEMQAYVWNGTEELGAKYDTTEIPDDLKDKAQEYHEKLVEAAAEADDDLMNKF FEDGDLSKEDIRAGVRKLTIAKEAFPIFCGSAFKDKGVQPMLDGVVDYLPSPEDVPAIKG YKPGDESVEIDRHPVKSDPFAALVFKISTHPFYGKLVFVRVYSGSVVPGDSVLDSTREKK ERIGKIFQMHADKENPMDRADAGNIYTFVGLKNVTTGDTLCAIDDPITLDSMTFPDPVIQ VAVEPKTKADQEKMGIALSKLAEEDPTFQVTTDEESGQTLIAGMGELQLDIIVDRMRREF KVECNQGKPQVAYRETIRKAVMDQGYTHKKQTGGSGQFAKVLMNFEPLDTTEGKTFEFEN KVTGGHISAEFIGPIEAGVKEAMESGVLAGFPVVGVKATVTDGQMHPVDSSEMAFKLAGS MCFKEAAPKAKPVILEPIMKVEVRTPEEYMGEVIGDLNQRRGNIQSMTDGVGVKVIDAKV PLSEMFGYIGDLRSKTQGRAMFTMEMDSYDEVPKSVSEEIIKAQRGE >gi|316916715|gb|ADCN01000009.1| GENE 6 4325 - 5524 1276 399 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 398 1 406 407 496 62 1e-139 MAKEKYERTKPHVNIGTIGHVDHGKTTLTAAISKVLHEEFPDVNPEYDFNQIDSAPEEAA RGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPMAQTRE HVLLARQVGVPKILVALNKCDMVDDEELIELVEEEVRDLLDENGFDRDCPVIHTSAYGAL HDDAPDHEKWVQSVKDLMDAVDDYIPTPVHDLDKPFLMPIEDVFTISGRGTVVTGRVERG QLAVNTPVEIVGIRPTQQTTVTSIETFHKTMDACEAGDNTGLLLRGLGRDDVERGQVVAK PGSVTPHTKFEGEVYVLTKDEGGRHSPFFSNYRPQFYFRTTDVTGVIELPEGVEMVQPGD HATFTVELIQPIAMEEGLTFAVREGGHTVGSGRVTKILA >gi|316916715|gb|ADCN01000009.1| GENE 7 5735 - 6463 785 242 aa, chain + ## HITS:1 COG:no KEGG:BL1096 NR:ns ## KEGG: BL1096 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 242 2 243 243 457 100.0 1e-127 MTGAQAAHCGSVSAISLGLPVSTAIPEAKGTLPKALFVGKAPISGKLKQRLVNEIESITM LALARSANTGLADGKLIPEVLVIGLKLTAKATGIPNEVIDLIAGQRKSGIVFVCVRDVPF EGSTREECAFAVRRAIPGRAGHTPIYQVYAGDWQPAGEAQLELAGSTIDELWASLCSQTI LGTPEVENLDARIIRHTEIARLESEVDKLTRDHQRVKNPAQRNEIYAKLHKAKAQLAKLR EA >gi|316916715|gb|ADCN01000009.1| GENE 8 6600 - 7418 681 272 aa, chain + ## HITS:1 COG:L0220 KEGG:ns NR:ns ## COG: L0220 COG0583 # Protein_GI_number: 15672356 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Lactococcus lactis # 1 271 1 267 272 159 30.0 6e-39 MFPLLETLVAVYEVGQFTLAADELKVSQSTVSSRIAQLEQMVGAPLFVRNAKSDVTPTQA GRMLYQTAIGIDGLWRDTREQIARVQEAREPLAVSFSHTTAAILLPKALPVMARDMDGFD FAVHVMNSDAILEQASMKAVQLGVVEKPIVNDSVDRVTLCEDRLVLAGEPDGVWMVREHG SGVRYYTDLYFKTAQVVPARTMEVSSNAAIVAALSAGFGQSLISEAAVPAGVPVQRELGD EFVRRFYALVPRSGLTHDQRELAETIIAALRG >gi|316916715|gb|ADCN01000009.1| GENE 9 7509 - 7589 65 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMSIEAQAFTSVKSLQPIHIIDFVDT >gi|316916715|gb|ADCN01000009.1| GENE 10 7588 - 8652 1746 354 aa, chain + ## HITS:1 COG:lin2251 KEGG:ns NR:ns ## COG: lin2251 COG2855 # Protein_GI_number: 16801315 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 23 353 17 331 335 163 36.0 4e-40 MREFCTKWWKRIATVDMLFIGVLTLLASLFASWLKQFPGFSLFGALIIALLIGMIIQFPI RSAYVGSNDGRKAGVKDAAGLISNKLLRLGIILLGFKLNLAVLFTQGIKCLPIAAVVVTL TIIVCYAIARKLGVDPMLAILTAGGTGICGAAAVMGLAGSIKVPEDKQDEKDNDVTMAVA IVAIMGTVFALLEIALGPLTGMTKDQLGITAGASLHEIAHAVAGGDAFGAVDIATIMKLS RVLMLVFAAIIIAIWWEKKHSEVQSTGKKTVAFPWFMLGFIGASIIGTFVPFVTSITPQL VDFAYIVLGMAMAALGINVNFKAIASKGKKPMLASFLTSILLMCFAAGVAMLFF >gi|316916715|gb|ADCN01000009.1| GENE 11 8709 - 9188 528 159 aa, chain - ## HITS:1 COG:no KEGG:Blon_1919 NR:ns ## KEGG: Blon_1919 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 114 1 114 162 191 92.0 1e-47 MANNGADVKPNQGVGATNTSTTTNTAENTVGTATPKQNGLAVLGKYVGVSATQTIVEYAT FAILHLIGVPSQIANGIAVVCSATYNFVMNRNVTFKSSSNFTRSVALFVLLWIWNFTFST LLIGWMPGATGLSPYVVKFIAMACQFGWGYPLCKYVIFR >gi|316916715|gb|ADCN01000009.1| GENE 12 9269 - 9634 286 121 aa, chain - ## HITS:1 COG:CC1981 KEGG:ns NR:ns ## COG: CC1981 COG0239 # Protein_GI_number: 16126224 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Caulobacter vibrioides # 7 121 5 121 127 60 36.0 6e-10 MTVFLPILVCLCGGVGASCRYLLDVTIKTYWQRAFPLSTFTINLIAGFLAGLVAALALGG TLDEPWRLVLATGFLGGFSTFSTAINEMVTLFRKHRYPTAAAYLVLSLGVPVVAAACGFL V >gi|316916715|gb|ADCN01000009.1| GENE 13 9634 - 10170 511 178 aa, chain - ## HITS:1 COG:no KEGG:BLD_0845 NR:ns ## KEGG: BLD_0845 # Name: crcB1 # Def: integral membrane protein for chromosome condensation # Organism: B.longum_DJO10A # Pathway: not_defined # 1 178 1 178 178 269 98.0 4e-71 MGSQSPSADARPGTRTATPPARKLPDIHLDIVLVVFCGGAIGTAIRYAFAQIPAAGSFHT GTFVANMLACFCYAGLTAYLAGSSRFDTRAKELTSRGLGMGVCGGLSTMSTLALEGFTAI RDGQVAAGIAYLLVTFALGLVCASAGVWAGTHLTGSSNVSAEASADTNAATTSKGGKA >gi|316916715|gb|ADCN01000009.1| GENE 14 10574 - 11617 1374 347 aa, chain + ## HITS:1 COG:L190278 KEGG:ns NR:ns ## COG: L190278 COG1063 # Protein_GI_number: 15673531 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Lactococcus lactis # 5 346 1 344 348 402 58.0 1e-112 MSETMKAAIFVEPGKMTVEEVPKAALQQDDDIVIRMVRTCVCGSDLWFFRGLSGQAAHSQ VGHEAIGVVEETGAAVESVKPGDFVVVPFPYSCGKCPVCKAGFESVCPHGGYFSACQAEY LRVPEADGTVVKVPGSPEDYSDEQLASLLTISDVMSTGYHAAVSAEVKPGDTAVVMGDGA VGLCGVIAAKMRGATRIIAMSRHEDRAALAREFGATDIVPERGQEAIDKVLEMTGGYGAD AVLECVGSKQSFDTAIGLIRRGGVIGRVGLPHDVEISAEGTFYGNIGIKGGPAPVRHYDI DGGLLDAVLKGEINPGRVFTAEYDLDHIQDAYEAMDQRKVIKALIRF >gi|316916715|gb|ADCN01000009.1| GENE 15 11988 - 12179 206 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622259|ref|ZP_04665290.1| ## NR: gi|239622259|ref|ZP_04665290.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 63 8 70 70 107 98.0 3e-22 MAKAYTELADCGIIDTGAGRAARVKRVKPIPEPLVRAAKTYADEARRLGASLDDAFNALC AQW >gi|316916715|gb|ADCN01000009.1| GENE 16 12200 - 13579 1277 459 aa, chain - ## HITS:1 COG:FN1101 KEGG:ns NR:ns ## COG: FN1101 COG1373 # Protein_GI_number: 19704436 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 2 441 23 460 470 174 27.0 5e-43 MLERKISDDLLEWKRSGTGKALLLTGARQIGKSYAVREFAKHEYAHYLEINLYENKQAAR ALASANDVQEFISRLTLFSPSTLIPGDTLIFIDEVQEAPDVMTMVKFLVADGRFDYVFSG SMLGTEFKGVRSYPVGSVIEKTMRPMDFEEFCWAIGVQKSTLENIRESCRSVTPIDRYIH DAMMTNFRTYLVVGGMPEVVQRFLDTKGDLAAVRAVQNELNRQYRHDISQYAGNRALQVQ EIFDQLPTQLIDGNGRFAVSSISPGARYDRNQKDFLWLVDAGVALKTNCVTEPKTPLKRT AQSPKFKLYQSDTGMLMARYPQPTAQAAYLDDSSPNLGAIYENVIAQELTAQGIPLYYYM AKKHGEVDFIADTNADSVMPFEVKSGRSYRTHAAIDAVLANAEYRISQGVVLSRSNIAQD GGTTYLPLYATYCLRDVCNLASPSTVSTIGDFSLTVHPV >gi|316916715|gb|ADCN01000009.1| GENE 17 13780 - 13893 58 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIERLRGRRLRGRKVVWAVRELCAVGRHVPALGVLDK >gi|316916715|gb|ADCN01000009.1| GENE 18 13843 - 14013 191 56 aa, chain - ## HITS:1 COG:no KEGG:BL1087 NR:ns ## KEGG: BL1087 # Name: not_defined # Def: MarR-type transcriptional regulator # Organism: B.longum # Pathway: not_defined # 1 56 162 217 217 79 76.0 4e-14 MLDCLNDDELHTLYGYLQRIIDASSDGVPASTAEDAKKRALLIEHPKRRHMTADRA >gi|316916715|gb|ADCN01000009.1| GENE 19 14403 - 14780 216 125 aa, chain + ## HITS:1 COG:no KEGG:PFREUD_01150 NR:ns ## KEGG: PFREUD_01150 # Name: arsR1 # Def: transcriptional regulator, ArsR family protein # Organism: P.freudenreichii # Pathway: not_defined # 12 118 3 107 114 103 55.0 2e-21 MTLEQRSDSAAAGHEACDQPIRSLEILNQCVPPFETLKDSNRQQLLVQLVCHGSQTVGEL AESSALSRTAVSHHIKLLEQAGFIEISKDATRRICSVRADRWLPLLDELSSALKTDLAAA EQCRA >gi|316916715|gb|ADCN01000009.1| GENE 20 14777 - 17281 2214 834 aa, chain + ## HITS:1 COG:TM0480 KEGG:ns NR:ns ## COG: TM0480 COG0178 # Protein_GI_number: 15643246 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Thermotoga maritima # 145 834 250 913 916 442 39.0 1e-124 MSDDQRPQAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYL EALSTYTRRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSR VASHVCPHCGARNEPTLNVAAGLPITCAGCGKEFHAPGAELLAFNSAGACPTCSGTGIVR EVNRAALVPDESKSIDDDAVLPWGSLMWDLMKQVCGAMGVRTNVPFSELTPEERDIVFNG PAVKKHILYKPKKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVVRFLKEGPCADCG GTRLSVAARAPHVRGLNLAEAGAMTLDAAADWVRGVPESLPADMRPMAANICESFLDVAR RLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVDGLL GVMHDLVADGNSVVVVDHDVRVLKACDHLIEMGPVAGAGGGRVIAQGTVGEVAANPSSRI APFLSGKVSARIRERVTESQVFDLGHIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGK TTMVLESLIPALKVQAAGERLPEHVLELKAEGINRANLIDATPIGANVRSTVATYADIHD ELRRAFARCEAAKTGGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDCGGS RYAPEADAIRRAVKGESRLSLSLPQLMAMSVDQALAVTSDLKKVHARLTTLHDLGLGYLT LGEPTPALSGGEAQRLKLASEMGKAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVSSGA TVVVIEHDLDMIANADWIIDMGPGGGESGGRIVATGTPEQVAANPNSITGRYLR >gi|316916715|gb|ADCN01000009.1| GENE 21 17339 - 18697 1637 452 aa, chain + ## HITS:1 COG:MA2050 KEGG:ns NR:ns ## COG: MA2050 COG0534 # Protein_GI_number: 20090897 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 22 452 11 447 468 206 33.0 9e-53 MVQIHGIRRASADAKYRQMTGQPVKPLILKLCLPAVISNLVTTAYNLTDTFFIGQLGTAQ SGAIGIAFSIMTVMQALGFFFGNGAGNSMSRELGKQNNDRASRLLAVGFAGAVISGLVIA TIGLLTLRPLVVMLGSTSTIAPYAVQYLTPLLVAAPCVCGSFALNGLLRYQGQSAFGMIG LVSGALLNFLLAPLFIFVAGLGIFGAGLATAICQTVSFTILTTMSRKFGVMKLSLRNCKP DMLLMREVAGGGLPSLIRQGAGSISVTCVNIAANPFGDAAIAGMAIVMRIMLGANSVIVG LGQGFQPVCGYNYGAGLFARVKEGYWFCVRLATCVLVALAALLWIFAPQLVEIFRSDPAV VAVGVAALHIQCCTVILNGFNMMGNMMTQTMGRTGIASFLALCRQGLFLAPIVLILPMMF GVLGVEMAQSVSDVLTFVVTIPFMRRILHELR >gi|316916715|gb|ADCN01000009.1| GENE 22 18714 - 19397 637 227 aa, chain + ## HITS:1 COG:MJ1434 KEGG:ns NR:ns ## COG: MJ1434 COG2231 # Protein_GI_number: 15669625 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Methanococcus jannaschii # 18 211 9 201 220 137 39.0 1e-32 MNNRSAKRVPGVPSPAYIESLYRTMAAALGPTGWWPAETTFEIMVGAVLTQNTAWGNVNR SLAALNAEGVLEPHKLAIMGPAHLQELIRPSGFYVNKSKTVQSLSRWYVERCGASPEGAA DIPDAELRTELLGLFGIGGETADDLMLYVFSRRTFVADTYARRLFAFLGFDVPAGYLAFH KAYSPVVLDTSLSVKDLQEFHGLIDEFGKAYRDDAAKSESFLGGWRA >gi|316916715|gb|ADCN01000009.1| GENE 23 19562 - 20233 807 223 aa, chain + ## HITS:1 COG:ECs0395 KEGG:ns NR:ns ## COG: ECs0395 COG0110 # Protein_GI_number: 15829649 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli O157:H7 # 32 211 17 196 203 191 50.0 7e-49 MTEDKPIAKPIIDDATREKMALMFSGEVYLPDDVDGFFDLQAAQRDLQLELNATPLTNPK RRTELMQAFFGAAGEGLYLECPVYANWGCNTYWGERCYANFNLTLVDDGEIFIGSHTMIG PNVTLVATGHPVRPDLRYQGAQYSLPVHIGENVWIGANVTVLPGVTIGDNAVIGANSLVT KDIPANTVAYGSPCKVIREINERDDVYYWRDRQFSERFKLKEQ >gi|316916715|gb|ADCN01000009.1| GENE 24 20243 - 20506 308 87 aa, chain - ## HITS:1 COG:ECs0395 KEGG:ns NR:ns ## COG: ECs0395 COG0110 # Protein_GI_number: 15829649 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli O157:H7 # 5 84 121 200 203 95 52.0 1e-20 MLPVLREHHYTYCIPVISGRNVWVGANVSILPGVTIGDNCVIGAGSVVTHSIPANSVTYG APCEVVREIGDKDREYFYKNRKLDVWE >gi|316916715|gb|ADCN01000009.1| GENE 25 20671 - 21759 1362 362 aa, chain + ## HITS:1 COG:CAC2949 KEGG:ns NR:ns ## COG: CAC2949 COG0679 # Protein_GI_number: 15896202 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 70 361 69 304 305 60 16.0 7e-09 MGQFGVMIGQLVGFLIMLMVGYGCVRLRFYGQTALDGMCSLLLNVLIPVLVFSNAVDGAD RAQLASNWGVMLLTAVMYALLILVFWLVAELLRLKGSRSHVFQASLIFGNAGFIGIPLIM ALWPQNGAIYVALMSIIDQTLLWTYGVWLCEPVDETTGGNAIGARGAVVNGSVNGAGSVG NAGSASNAANGGSPAVVRPSPGTRVLGLLKRFVNPAFVGVMLALILILLGVKVPDIILKP LHTIGNMATPMSLIYLGGLFALTKWWGVLKRYELYAGLVAKMIAFPLAFYALLTALTGAL PQLPITHDMVLMITVIAGLPTMTTIAMFTGRKNNMPEYAVGFVLVSTLFSLASLTIVSAV VF >gi|316916715|gb|ADCN01000009.1| GENE 26 21782 - 22369 724 195 aa, chain + ## HITS:1 COG:ECs2324 KEGG:ns NR:ns ## COG: ECs2324 COG3250 # Protein_GI_number: 15831578 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli O157:H7 # 16 192 182 355 370 174 49.0 8e-44 MPGASGAWNFIDAANDSASEAAVPYFKEIFDYARTLDPQHRPLTYTNLMMAAAGKDKCHQ FADVICLNRYYGWYMQGGYQLIGAKKAFIDEMNQWMNTEPNKPFLFTEYVADTDAGAHKL PSVQWSEEYQCEYLTMQHEVFDMFEAVVGEQVWNLCDFQTGEGIMRVDGNKKGVFTRDRQ PKAGAYVLKERWETK >gi|316916715|gb|ADCN01000009.1| GENE 27 22551 - 23987 2134 478 aa, chain - ## HITS:1 COG:Cgl2165 KEGG:ns NR:ns ## COG: Cgl2165 COG0174 # Protein_GI_number: 19553415 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Corynebacterium glutamicum # 4 476 3 475 477 621 64.0 1e-178 MTELKSKEDVEALINKEGIEYVSVRFTDLIGVQQHFTVPASEFLKDAFTDGMPFDGSSVQ GFQAINESDMKLVPDVETSFVDPFRKHKTLDVAFSIVDPLTDEPYSRDPRQVAGKAEAYL KSTGIADTASFAPEAEFFIFDKVRFENGMNRSFYEVDSIEAPWNSGVDVEEDGTPNIGFK NRVKKGYFPVPPIDHTQDLRDDMVANLQKVGLILERSHHEVAGAGQQEINYRFNTLQHAG DDLMKYKYVVHETAALAGKAATFMPKPIADDNGTGMHCHQSLWKDGKPLFYDEKGYAGLS DLARWYIGGLIKHSSSVLAFTNPSLNSYHRLVPGFEAPVNLVYSARNRSAAIRIPLAGTS PAAKRIEFRAPDPSCNPFLAFSAQLMAGLDGILNHIEPPEPVDKDLYELPPEEHAGIKQV PSSLAEAMDALEEDHDFLTAGDVFTDDLIETWIGLKRDEIDQARLAPTPLEYELYFHI >gi|316916715|gb|ADCN01000009.1| GENE 28 24005 - 24160 58 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291456404|ref|ZP_06595794.1| ## NR: gi|291456404|ref|ZP_06595794.1| hypothetical protein BIFBRE_03612 [Bifidobacterium breve DSM 20213] # 1 51 1 51 51 71 74.0 2e-11 MRYNGIHRKIARFAGSKLGLRECFVTVADNRAGALFQRNIITEWKRRLSGE >gi|316916715|gb|ADCN01000009.1| GENE 29 24306 - 25088 1330 260 aa, chain - ## HITS:1 COG:no KEGG:BLD_0827 NR:ns ## KEGG: BLD_0827 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 260 1 260 260 503 99.0 1e-141 MAEKDAKPKKQSTIKQIIQIYKYTAKEDKALPWLEAGAFLLPVVVMIIIGLIAKWTWLTW IFTMITAIMLGMLLATMMLTRRADAVGYKQIDGKPGAAIGVLSNMQKAGFDFPQEPVWID PKTKDAIWRGTSMNGIYLIGEGEYGRIMKAMDRQEHDIKGVTAGSSIPVYRISVGHGPKQ VPLDKLRSTVTKSKSYEPTNHKNALIAKIHPRRRFLLTKAEMETLNDRLRTLQAKKGYAI PKGMDPNHPQKISRRAMRGR >gi|316916715|gb|ADCN01000009.1| GENE 30 25172 - 26662 588 496 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 4 494 3 457 458 231 32 1e-59 MSEQFDLVIIGAGPGGYSTALRAAELGMKVALVERDATVGGTCLNRGCIPSKALITATHT IDTVHRAAELGVNASVNGIDFGTLRDYRLRVVKTMVGGLAGLLAHRGITVFRANAAFHAD ETAPATSNHIVHLVPSPDQSDILTYHKADVPEPSGPTMDLTATNIVIATGAKPRPLPGNP FAGALIDSTQALEVNEFPSSAVIIGAGAIALEFASMWNAAGSKVTLLIRKDRVLSAWDRR AGTTLTRELKRHGVNIITRASVTHVDTGANLGATVHYTREGQDGEQSVWGEIALVAIGRD PITDPAWGVTIDDHGHVATDAYGRTDKPGVWAVGDVTAGHALAHRAFEQGIVIAETIAGL NPKPVDEATVPQIVFSFPEAASVGLTVEQAQAREDLIEIKETNYPMLANARMLMSGTAGS LTIVSGCDAANPDTPRVLGVHMVSQMASDIIAEAEQLVGNHVPLADAARLVHPHPTFSET LGEALLKADGRPLHTR >gi|316916715|gb|ADCN01000009.1| GENE 31 26810 - 27433 855 207 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0627 NR:ns ## KEGG: BLJ_0627 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 207 1 207 207 350 97.0 2e-95 MTWNPFKKKEEAQAPVEQAPKKAANPSEKKGRPTPKMKQAQAAGIRPLVPVDRKASAKAA KARLREKENAEYEAMQKGDINHMPKAERLPWRIYIRDYVDARFNLGEWFIPVAFAILIVS MFVTSLMQNQWASIIMMALMYGYLIAVIIDVWLMWRKLKAKLIAKYGEQSVSKGSRSFSY AWSRSIQMRRWRLPKPRYPKRGHWPAD >gi|316916715|gb|ADCN01000009.1| GENE 32 27525 - 28892 2230 455 aa, chain + ## HITS:1 COG:MT2598 KEGG:ns NR:ns ## COG: MT2598 COG0624 # Protein_GI_number: 15842054 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 5 436 20 443 470 311 44.0 2e-84 MTTLTADEIRSRVETDWNRIVKVLAEKVALQSISAKGITAEHMKRSAEFVADELRLVGVD AKVVQASNADGTPGAWEVIGSHIVSPDAPTVLLYAHHDVQPVPDPAEWNTDPFVATEIDG RLYGRGSADDGGGIAIHSGALKALGDDLNVNIKVFIEGEEEMGSPSFIPFIEAHRDEFAA DVIIVADSGNWSADIPSLTTSLRGNTCVDVTVQGLEHPVHSGQYGGPILDSNTLAAMLIA SMYDENGDLAVPGVTAEEPIGGLQHDLDETTVREDSGVVAGYEFAGTGSLASRLWTKPSV TVIGFDAHPVEGSFNVIAPETRFRLSLRTAPTQRPEEAQEALAAFLESHAPFGAKVTVER GENGMGWAMDPTAVATKDALEAMTEAFGVEPINKGEGGSIPFIPELQRIFPNAQVLVTGP EDPKANAHSPNESISLPGLKNNVITEALLLDKLGK >gi|316916715|gb|ADCN01000009.1| GENE 33 29192 - 29791 990 199 aa, chain + ## HITS:1 COG:Cgl1054 KEGG:ns NR:ns ## COG: Cgl1054 COG4721 # Protein_GI_number: 19552304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 12 194 16 199 201 106 41.0 3e-23 MTEAVAKANYKWRVVDIVVAAIIAVASGVIFWGWDIVCSAPLALFEGVTPGFEGLLNGFW LFAGPLAAIIVRKPGAALFAETLAAFLELTLGNQWGVGGSLIVGIIQGLGAEIAFAVFAW KKWNIGTTILSGALAGVGCWAYYWATNPGWNGLRVTWYLVGSIISGVVIAGVVVWYLSRA LAVTGALERFESGRSKARV >gi|316916715|gb|ADCN01000009.1| GENE 34 29791 - 31266 226 491 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 273 479 1 198 205 91 29 9e-18 MQINPAAVEASGWGWRHATRKDFALRAVDFTIRPGERVLLLGASGAGKSTMMAGLAGVLG GDEEGEQEGSLTIDGVDAREVRGRVGLVLQDPDSQIILERLGDDAAFGCENLNVPREEIW QRVRESLDMVGLGGLELDRSTRHLSGGQRQRLALAGVLAMKPGLLLLDEPTANLDPEGVV EVHDAVKKVIEATGQTMVVVEHHIDVWLDLVDRVIVLGRPDASSPTGAVIADGKPDEVFA EMGDVLAAGGAWVPGRAIPDYSPKQESAHDAPVLSTENLSFGRGAALGVGINLDFYPGEV TALMGPNGAGKSTLALTLAGLLKPIAGKVLIADNLKPAHAGREPIDWKSKELLGRIGMVF QEPEHQFAANFVRDEVSIGPKSMGQSQDEAYQTADRMLEQMNLTRFAKANPYTLSGGEKR RLSVASMLAAAPKVLVMDEPTFGQDFSTWNEMVKLIAAIRDQGSCVIMVTHDEALVDALG ARRVMFEEAKA >gi|316916715|gb|ADCN01000009.1| GENE 35 31263 - 32090 691 275 aa, chain + ## HITS:1 COG:Cgl1056 KEGG:ns NR:ns ## COG: Cgl1056 COG0619 # Protein_GI_number: 19552306 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Corynebacterium glutamicum # 25 270 3 248 251 165 39.0 9e-41 MSDVVTVSPQETRVEPVKASSPSWFIARINAVSRIIGALLLCIPMFISLDAVSASTALGI EFVLLWIGGVAPWTVCRKTWPVWIAAAGSFISVFLYGRTSGEILWQGGWIVISEGSINLA IATAIRVAAIAVPGVILALGLDPTDLADGLVEILHFSPRFVYGGLAGLRMFTLLQEDWRA LGLSQRSRGLGDGNAIARALSQAFGLLVLSIRRATKLATAMEARGFGSGAPRSQARISRL KPIDWIFYVICLAVPLASIGVAVGTGNWHFAFQGV >gi|316916715|gb|ADCN01000009.1| GENE 36 32286 - 33164 171 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 97 280 59 239 255 70 28 2e-11 MPINAQILDNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEV SQALEHPRIISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGAD DVELGKNGRAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAG SLFHLPVLAMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLF GNEARGLEPDILTRCGRIVSIPLYGKAESLNLGTSAAVMLMSLSMSGHVERM >gi|316916715|gb|ADCN01000009.1| GENE 37 33218 - 34285 1525 355 aa, chain + ## HITS:1 COG:Cgl1356 KEGG:ns NR:ns ## COG: Cgl1356 COG0016 # Protein_GI_number: 19552606 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Corynebacterium glutamicum # 19 351 18 341 345 384 54.0 1e-106 MAEQMVFDADQVTAEVAEGIEKIQNASNLEELKAIKTTYAGADSAMTKASKAIGSLPADQ KKEAGKLMGKLRADFGRAYGPKEVELKEAAEKAALAAETVDMTLPVSRKPLGARHPLPKL MEDVEDFFISMGWQISSGPEIEAEWYNFDSLNFGPDHPARQMQDTFYVKGNQAKDAAGFV GSNMVVRTQTSSDQVRALLTRGVPLYIASPGRVFRTDELDATHTPVFHQCEALAVDKHLT MADLKGVLDKLAVAMFGPEAKTRLRPSYFPFTEPSAELDLWFPDKKGGPGWLEWGGCGMV NPNVLKSAGIDPDVYTGFAFGVGMERTLLLRSDINDMHDLVEGDVRFAEQFVMGE >gi|316916715|gb|ADCN01000009.1| GENE 38 34293 - 36902 3943 869 aa, chain + ## HITS:1 COG:Cgl1357_2 KEGG:ns NR:ns ## COG: Cgl1357_2 COG0072 # Protein_GI_number: 19552607 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Corynebacterium glutamicum # 174 866 1 665 673 424 38.0 1e-118 MPMIDIDWLKDHVEVPEGLTYEQLAKDLVKVGLEEEEIHSSQVTGPIVVGYVVDATPEPQ KNGKTINWCHVDCGDEWNETDEDGNKVPRGIICGAPNMKAGEKVVVTLPGAVLPGDFKIE PRKTYGHISNGMCASERELGLGDNHNGIILLRQYGFSEAEYEALKPGQDAMHLLHLDQPL LEINITPDRGYTLSYRGVAREYHHSTGAAYTDPAVALNEKAPEPADYQPGTPVDIDVEID DNNPIHGVPGCDRYYARIVKDFNPNAHTPNWMRRRLIRAGMRSISLAVDVTNYVMLDLGQ PMHAYDLDKLEGPIVVRRANEGEKLTTLDGKEHDLSVEDLLITDSPNGERGSRILGLAGV MGGLYGEVTADTKNILLEAAHFDQVTIARSARRHKIPSEASRRFERGVDTALQPAATQMA AELMAKYGNGEPSEHPNDVNNTPRAKAIHFKASEVARVAGLDVDINRISDILTDIGCTVA GGGNGEFAVTAPSWRPDLNEPCDLVEEIARLVGYDQIPITVPPAPVEGLVGLTPDQQRRR RVADELAEFGMVESLSYPFVGDDDYKAFGFDPEATKKVSVEIANPLYGDRPYLRREILPT LATTVQRNIRRGIENVSLYELGHVYLWDPNAPAIPALPGGVRPTDEQLAALDAGLPEQPD HVAGILTGLAEDDGWMGGKRPVDWSDAVEAVRRIAGRIGAAIELDQPAADDVPVQWHPGR AARVMVGDVFTGWVGELHPRVNEALGFPAHSAAFELNLTALFATLTGKPVQAKPISTFPP VKQDLAFTVDETVTAGQLENVIRKAAGANLESIELFDVFTGEQVGEGKKSLAYAVVFRSP SKTLSAEDSDAIRKAIVAEAAEIGAQLRA >gi|316916715|gb|ADCN01000009.1| GENE 39 36933 - 37619 773 228 aa, chain + ## HITS:1 COG:no KEGG:BLD_0817 NR:ns ## KEGG: BLD_0817 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 228 1 228 228 355 100.0 7e-97 MSQAEQDKPKYGQYQQPEYGAMSGQYGPNYNPYIYGAPEPDTKKDSAAAAGDNGGAAQSQ QAGQPYGQQPAWPGNQQAGGWPYAQGGQQSGPGAYPGGYPGMQGQPYGQQPNGQPHQPHY YHGIDLNDPNQNPLYGHWDSYAIISFILALFFPVPVLSALMGAVAMWRTRTFHMKGFGLA VAAVVINVLYTIAVIWMAFNGYDAMSLYQEALQQLTGGTGSSSDSISA >gi|316916715|gb|ADCN01000009.1| GENE 40 37718 - 38812 1504 364 aa, chain + ## HITS:1 COG:Cgl1361 KEGG:ns NR:ns ## COG: Cgl1361 COG0002 # Protein_GI_number: 19552611 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Corynebacterium glutamicum # 6 364 15 357 357 277 43.0 3e-74 MAKYTVAVAGATGYAGGEALRILAAHPDFDITCVAGHSSVGESMAKHMPHIPQLANLVVE DTTPEVLNGHDVIILALPHGASGKLASQLNPNAVVVDLGADHRLEEQAAWDEFYGGDFYE HWTYGMPELITGKAADGSYTRQRAALPGTKRIAGPGCNVTATTLALQPGIAEGLVESQDI VADLVVGYSGAGKNLKRTNLLAAEALQSALPYSVGGKHRHIPEILQNFAHAAGKSAAEAS EFTLGFTPILAPMSRGILATVSARMTDKAKTLSDEEIRAVWSKAYEGQDFMVLLPEGTLP ATGNIIGSNAAHLQVVTDRKAGRIYAFAAIDNLNRGTAGQAVQSLNIALGLPEDAGLTKI GVAP >gi|316916715|gb|ADCN01000009.1| GENE 41 38809 - 39984 1578 391 aa, chain + ## HITS:1 COG:ML1407 KEGG:ns NR:ns ## COG: ML1407 COG1364 # Protein_GI_number: 15827737 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Mycobacterium leprae # 3 391 19 407 407 325 49.0 1e-88 MSVTFAQGFSAAGVAAGISSVEGKKDLALVVNNGPLDAAAGVFTSNRFCAAPVQWSRKVV ADGHVKAVILNSGGANACTGEAGYAQSVATAETVAGLIGAEPNDVAVCSTGLIGELLPLD NVLAGAKSAHEALAATAEAGTDASHAIMTTDTKPKTVELTGSNGWKIGGMVKGSGMIAPQ LATMLCVITTDAVVSAGQMQAALAVAAEHSFNRIDVDGCMSTNDTVLLLASGASGVEPDK DEFNKLVREACASLSRQIIGDGEGASHDIRITVTGATSEDAALACGRAVAASNLLKCAIS GNDPNWGRIVSSLGTVPPEVAPYDSNKVTVDVNGVRICENGGAGRDRSEVDMTPREVHID IDLNTGSDAEATVWTDDLTHEYVHINADYES >gi|316916715|gb|ADCN01000009.1| GENE 42 40056 - 41012 1034 318 aa, chain + ## HITS:1 COG:Cgl1363 KEGG:ns NR:ns ## COG: Cgl1363 COG0548 # Protein_GI_number: 19552613 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Corynebacterium glutamicum # 13 307 3 295 317 341 62.0 1e-93 MSTELKGPGFHFDVHTDLRADQKAEVLIEALPWLEEFAGQRIVVKYGGNAMVDDHLKQCF AEDMVFLRQVGLHPIVVHGGGPQISHMLKALGIKSEFKGGLRVTTPEAMDVVRMVLTGKV SRELVGLINAHGPLAVGLSGEDGGLFSAMQRRPIINGKPTDIGLVGDVVSVDASAVEDLV AAGRIPVVSSVAPNEEDATEVLNVNADSAAAALAAAVGARKLVILTDVDGLYADWPDKNS LIGRIGVENLRDMLPDLESGMRPKMEACVRAIDGGVPQAHIIDGRKPHSILNEIFTSAGI GTMVMPDEGLEMRSSYGY >gi|316916715|gb|ADCN01000009.1| GENE 43 41002 - 42297 1582 431 aa, chain + ## HITS:1 COG:slr1022 KEGG:ns NR:ns ## COG: slr1022 COG4992 # Protein_GI_number: 16329751 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Synechocystis # 25 422 36 422 429 304 43.0 2e-82 MATEHEEKLGTEDSKWLGEYSQVHMNVFGTPLRVMDHGQGAHIWDVDGNEYLDFLAGIAV NSLGYAHPKWVKAVADQAAKVAHISNYFASEPQIELASKLVKLAGAPEGSKVYFGNSGAE GNEAALKLAKLYGRTLPGALPSIGGKPARILAMTHGFHGRTMGALSATWKPGIRKPYDPL VPNIEFVRAGDKVALHDAFAQTGLGRYGKGPVAAVILELIQGEAGVQPLGADYVKFVREL CDINHALLIIDEVQTGIGRTGKWFAFQRDDLSGGVTPDMVTFAKGVAGGFPMGGMIAFGE KLAALFTPGSHGSTFAGNPLGAAAGLATLDVIEDENLVANAEARGEQLRDGIMATGNPLF VSVRGRGLLDAVELKHPCSHAVMNYCLEHGLIVNAVAPNALRFAPPLIVTAQDVDQALAI LKDVPTDLPDD >gi|316916715|gb|ADCN01000009.1| GENE 44 42341 - 43306 1545 321 aa, chain + ## HITS:1 COG:MT1694 KEGG:ns NR:ns ## COG: MT1694 COG0078 # Protein_GI_number: 15841112 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 5 309 2 303 307 338 56.0 6e-93 MTPELRHMLRDDDLNHEEQKQVLELAIKFHHDRFYKQPFAGPQAVAVLFDKPSTRTRSSF SIGVAELGGYPLVIDKSGSQLGRGEPVADTARVLNRMAYGVVWRTFGQGRVEEMAKYSTH PVVNALTDDFHPCQILADFQTIAEHRGGVDNLKNQTIAYLGDAANNMANSYLLGGAVAGM DVRVAGPYGYLPRPDIVADAKRVAAETGGSILVTTDAKEAVKDADCVFTDTWVSMGEEAE YAIRSKPFWDYQVNTELMALAKPDALFQHCLPAYRGKEVTAEVIDGPQSVVWDEAENRLH AQKALLTWLTGKARGDESLLA >gi|316916715|gb|ADCN01000009.1| GENE 45 43303 - 43815 603 170 aa, chain + ## HITS:1 COG:Cgl1366 KEGG:ns NR:ns ## COG: Cgl1366 COG1438 # Protein_GI_number: 19552616 # Func_class: K Transcription # Function: Arginine repressor # Organism: Corynebacterium glutamicum # 13 150 2 137 156 102 48.0 2e-22 MSETGPSLQRPATRAARLSAIEQALATHIITSQSQLSKILIDEGIAVTQATLSRDLDEMH AVKTRLKDGTVAYTVGRSVVASEGEDVGERGEAQMSRVLNGLVTSVAAARNLVVVHTPSG AAQYVASVIDKQSIEGVLGTIAGDDTVMVICTNDDTAVFRSDWLLSLASK >gi|316916715|gb|ADCN01000009.1| GENE 46 43898 - 45136 1906 412 aa, chain + ## HITS:1 COG:Cgl1367 KEGG:ns NR:ns ## COG: Cgl1367 COG0137 # Protein_GI_number: 19552617 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Corynebacterium glutamicum # 6 402 4 400 401 529 63.0 1e-150 MADNKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGAVE SYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQFGADTISHGC TGKGNDQVRFEVSIASIDPTLKAISPIRDLSLTRDVEIAFAKEHKLPITQTEKSPYSIDQ NVWGRAIETGFLEDPWNGPTKDCYSYTDDPAFPPVEDEVVIEFKEGVPVKIDGRDVTPLQ AIEEMNRRAGAQGVGRIDLIEDRLVGIKSRELYEAPGAVALITAHQELENCCLEREQHRI KRDIDKRWGELVYDAQWFSPATQSLNAFIEDTQKYVSGEIRMVLHGGRAVVTGRRSDSSL YDYKLATYDSGDTFDQKSSNGFIDIYGLPSRVAAARDVKFGNGIEVPENTVE >gi|316916715|gb|ADCN01000009.1| GENE 47 45581 - 47053 2024 490 aa, chain + ## HITS:1 COG:Cgl1368 KEGG:ns NR:ns ## COG: Cgl1368 COG0165 # Protein_GI_number: 19552618 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Corynebacterium glutamicum # 9 466 10 462 477 490 58.0 1e-138 MTENNEHLALWGGRFTSGPSPELARLSKSTQFDWRLADDDIAGSRAHARALGRAGLLTAD ELQRMEDALDTLQRHVDDGSFAPIEDDEDEATALERGLIDIAGDELGGKLRAGRSRNDQI ACLIRMWLRRHSRVIAGLLLDLVNALIEQSEKAGRTVMPGRTHMQHAQPVLLAHQLMAHA WPLIRDVQRLIDWDKRINASPYGSGALAGNTLGLDPEAVARELGFSRVTDNSIDGTAARD LVAEFAFVAAMTGVDISRLSEEIIIWNTQEFAFVKLDDGYSTGSSIMPQKKNPDIAELAR GKSGRLIGDLTGLLATLKGLPTAYARDLQEDKEAVFDQVDTLEVLLPAFTGMVRTMHFDG DRLEEEAPTGFALATDIAEWLVKNGVPFRHAHELSGACVKLAEGRGQELWDLTDNDFIET FAAFLPADKAPGVREVLSSHGSVDSRNGKGGTAYGRVREQIADAKAEVEELKLFPASTSD GSAYKAPGTF >gi|316916715|gb|ADCN01000009.1| GENE 48 47402 - 47596 261 64 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0644 NR:ns ## KEGG: BLJ_0644 # Name: not_defined # Def: thiamine biosynthesis protein ThiS # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 64 1 64 64 117 100.0 1e-25 MQVNGEQVTLETPVSVADYLEAHGFRAERVAIELNGEIIPRDKRADAMLDDQCVMEIVQF VQGG >gi|316916715|gb|ADCN01000009.1| GENE 49 47608 - 48477 1299 289 aa, chain + ## HITS:1 COG:FN1754 KEGG:ns NR:ns ## COG: FN1754 COG2022 # Protein_GI_number: 19705075 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Fusobacterium nucleatum # 41 289 5 254 257 294 60.0 1e-79 MSNINPVTEASVEATPLPPQPAVTNPVGTAAPILPVEDKPLNLGGHEFQSRFILGSGRYD LNLIKATVEHAGTQIVTMALRRAQTTENSVLDYIPEGITLLPNTSGARNAEEAVRIARLA REVCHTDFVKVEIEHETKYLLPDNAETIRATEMLAKEGFVVMPYMFPDPIAARQLEEAGA AAVMPLGSLIGSNMGLRMRDFIEIIIANAHVPVIIDAGIGRPSQACDAMEMGADAVMAYT AVASAGNIPLMAEAFKHAIDAGRAAYLSGLGKVTEGQAVPSSPTTGYLH >gi|316916715|gb|ADCN01000009.1| GENE 50 48554 - 49363 776 269 aa, chain + ## HITS:1 COG:aq_1329 KEGG:ns NR:ns ## COG: aq_1329 COG0476 # Protein_GI_number: 15606532 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Aquifex aeolicus # 3 254 4 257 271 300 57.0 1e-81 MALTDEQVERYARHLILKGVGVKGQKRLLASSVLIIGAGGLGSPAALYLAAAGVGHIGLV DGDVVDMSNLQRQIIHTTARVGAPKVESAATAIRALNPDVTVDTYYELVDASNIAGLIEP YDLVIDATDNFAAKFLINDACVLAGKPYIHAGVVGFAGQVMTVIPGEGPCYRCIFRDLPA AGEIPTCKEAGVLGAVVGVIGSLEATEAVKLIAGVGEPLVARMLTVDALTMNIRRVPLPK HVPDCPVCGEQPTITAIDPANYIQPACAI >gi|316916715|gb|ADCN01000009.1| GENE 51 49420 - 49776 154 118 aa, chain + ## HITS:1 COG:Cgl0209_2 KEGG:ns NR:ns ## COG: Cgl0209_2 COG0607 # Protein_GI_number: 19551459 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Corynebacterium glutamicum # 35 113 16 97 98 62 41.0 2e-10 MPIALHNAVDDDESSEASYRRITPAEFAKLDPNTVTLLDLREPADFAAHPVEGAINAPLD PLAHVLKTVPTDRTVVVYCAQGWWSEEVAEILADRGYDVASLDGGFQGYLDYLETHHD >gi|316916715|gb|ADCN01000009.1| GENE 52 49773 - 50069 170 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFERGDIAVLVAAAFDLHVAMLDDLTAVLGDQALNLRSGEQMSHDFRSFPFWVGSVQSPV VNYDYPAIFKNPSSNTVTDCRAQICPCTLIQKNDNGNR >gi|316916715|gb|ADCN01000009.1| GENE 53 49938 - 50471 576 177 aa, chain + ## HITS:1 COG:CAC1667 KEGG:ns NR:ns ## COG: CAC1667 COG1418 # Protein_GI_number: 15894944 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 35 152 43 155 173 88 41.0 7e-18 MGHLLTRTQIQRLVAKHGREVIEHRHMQIERCCYQHGNVTTFEHSVRVACLAVWMADRAH LWYRVDLKSLIRAALLHDYFLYDWHDWDNGEHQWHGFTHGHAALVNALKDFKLNDIERNS IENHMFPMTPVPPRYIEGYLVTLADKCSATAETFSFDRFNKRALPAAKPYAEIEARR >gi|316916715|gb|ADCN01000009.1| GENE 54 50468 - 51235 943 255 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 8 237 6 248 270 123 30.0 4e-28 MIITLEHYFLWFLFYSFVGWMYESILVSCQQHRLVNRGFLNGPLCPIYGTGAILGVAILG NVHNPIIIFLISMVGATILEYTTSWVMEQLFHARWWDYSNFRFNLQGRVCLLGALIFGLG GVGVVLGSQPYVERVTDMIPLPMLHTLVTVLALITIIDLAVTVAGMLEFEQVLDSVSQVV QDVAARAGGTWQWGSSAVSDRMRELSQDTVERLRWAVNGVINAQQKRMLKSFPKFQVPDR QDTIDSLRELMGPRR >gi|316916715|gb|ADCN01000009.1| GENE 55 51361 - 52683 631 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 22 409 16 388 418 247 36 1e-64 MAHVTDFKEAGFNTLLEELEWRGLISQSTDRDRLAEALNGEPITYYCGFDPTAASLHIGN LVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNPKDVVAGWADRLKNQIGGIL DTEGANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFS YQVLQGNDFLHLFDEYHCTLELGGSDQWGNLTSGLDLIHKVRGVDVNVFTSPIITDASGK KFGKSEGNAVWLDATMLSPYKFYQFWINRPDVEMESLLKAFTFLPKAEIERLVEESKTNP GKREAQKTLAWEVTSFVHGEAATQAAIDASGALFGRGGNLEDIDEETLESVLDGFKVVDE NGEHVFPVSKPGDRVIDAAQAAGLFKSASEARRAIKSGGVYLNNNRIEDEEQVLAEADFL AGRFALIRRGKKALGAVENR >gi|316916715|gb|ADCN01000009.1| GENE 56 52711 - 54492 2726 593 aa, chain + ## HITS:1 COG:no KEGG:BLD_0801 NR:ns ## KEGG: BLD_0801 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 590 1 590 591 670 99.0 0 MAEGNERSGKSYGGGHKGYGDRRPGNRGGKGFKPRGKGGFKPRHDGEGFKPRRREDGEGY APRRDGDGEGHGGYRKSYGKSGGFHKGGRSGFGGKGGYRGNGPRRDGEGFKPRREGGYRS HEGENGENPRYQHRDNDRRDFRRDGERRSFRRNDDRRDFRRDDRRDGDRRDFRRDNDRRD FRRDDRRDNDRRDFRRDGERRNFRRDDDRRDGDRRNFRRDDRRDDRRDFRRDDRRDNNRR DGEFREFSQEEKRQYREEKRSEYMRRPRRNSDGTMSFPSQNPYTDRRPDEPKMPKGMEWS MLSKDERERLRGLSKEHAENIGLHILAAFALEESDPELALEHAKWVARQASRIDFARETL AFVAYRQGDYKLALREFRTAYRMNGFLDYLPFIADCERGVGEPKKAVELALSDEGKQLHG APKVEMFLVYAGALGDLEMWDKAIEVVHTVGRSQGLPGEYRMRAVQAEQYFLEEAGRSKE AEQLNDLLDRLEDQYADEEIDENSDDVVIDHDLEDITDDSDVLEKLGIDPDEAQYAPDPE QEYGDEDDEAEDGDAESDEADETETDSANDAEADDSAESADSDSTEPETETEE >gi|316916715|gb|ADCN01000009.1| GENE 57 54501 - 55541 1288 346 aa, chain + ## HITS:1 COG:Cgl1376 KEGG:ns NR:ns ## COG: Cgl1376 COG0647 # Protein_GI_number: 19552626 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Corynebacterium glutamicum # 16 282 7 266 328 180 42.0 4e-45 MTRFLKGTDRPLAEAYQLALLDLDGVVYRGKNPVEYAADSIRAAEAAGMTIEYTTNNSSR FQHVVADQLKGFGLDVEPWQVITSSVVAARMVAKALPAGARVQVLGAEHLRDEVTRNGLT IVDGPQDRPQAVIQGWYPDMTWQMMADAAFAVEAGATYFVTNRDLTIPRELGIAPGCGSM IRAVITATGVEPVASAGKPEAYMYDEARELNAAEGHDLVPKEASIAIGDRLDTDIEAGNR GDYDSLAVLTGVTNPTELMLAPSHLRPTFIAPDLRELGEAQPEPVRDESGTWECRKASAW FENGQVHVSDPTSMDGLRAAVCAAWEAADQGAQLSEATVPVFAIEA >gi|316916715|gb|ADCN01000009.1| GENE 58 55546 - 55692 194 48 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0653 NR:ns ## KEGG: BLJ_0653 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 48 1 48 48 62 97.0 4e-09 MPTDSEHAPVTERYPELADIDEQDNDRKLETYRNVLESLQHELDNNRS >gi|316916715|gb|ADCN01000009.1| GENE 59 55798 - 56571 688 257 aa, chain + ## HITS:1 COG:SMc00973 KEGG:ns NR:ns ## COG: SMc00973 COG1189 # Protein_GI_number: 15964632 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase # Organism: Sinorhizobium meliloti # 14 252 4 240 245 181 46.0 1e-45 MTEQHIDPATPLDRLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMVKAGHSE LAVDKGDDYVSRGAYKLLGAFETFAGNGLTGPEGLECLDIGASTGGFTDVLLRGGAAKVV ALDVGHGQLDPRIANDEHVIEMSGVNIREVEADDLPYRPAMIVSDVSFISLTYVIPVIAR IAAPGAQIVLLVKPQFEVGRAGLGKNGIVEDPALRERALHDVVACAEQHGLDVVATADSP IIGTHGNEEYLLYAVLR >gi|316916715|gb|ADCN01000009.1| GENE 60 56553 - 57227 449 224 aa, chain - ## HITS:1 COG:no KEGG:BLD_0797 NR:ns ## KEGG: BLD_0797 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 224 1 224 224 400 100.0 1e-110 MGKHTQNCTLIGKGVYGTIGVDQRSRLADGAHFHTMIVTSTLEASVIEGDKLVIKSGIVR CDGDIRVSSISGSGDIEVGGDIICDEITFTGKLRCNGDIVCSGNLSVNGSLGTRHISGQT VRLNGVLKGHDVNSRALEVHPLRSTMFSRFDMDGYEDGSTVRHITAVTVEANHLQCRTLT ADSAMLRNGSAVESATCATALGIDRTSSVLLVNGDCQRIHLKTA >gi|316916715|gb|ADCN01000009.1| GENE 61 57366 - 58028 973 220 aa, chain - ## HITS:1 COG:BH0597 KEGG:ns NR:ns ## COG: BH0597 COG0569 # Protein_GI_number: 15613160 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Bacillus halodurans # 13 217 7 213 218 125 35.0 5e-29 MAAKPSGNKSVLVIGLGRFGGSVAATLDQMGQDVLAVDKNPELVARWSAHLPTIQADMTD VLAIEQIDASQFDTAVVAIGDSIEASVIITGNLLDAGVSDLWAKSVSQEHARILQRIGAR HIINAETDAGKRVGHLVAGNYLDYIEIDGPYTVVKVHTPLYAVGRSIEDVQVHDKYGVTV VGLKAPGKEFQYGSKELVMHRNDELILMGKQDQIDHFIQG >gi|316916715|gb|ADCN01000009.1| GENE 62 58079 - 59545 1504 488 aa, chain - ## HITS:1 COG:BS_yubG KEGG:ns NR:ns ## COG: BS_yubG COG0168 # Protein_GI_number: 16080162 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Bacillus subtilis # 52 488 16 445 445 200 34.0 6e-51 MANDFDESSANEEASKGLSWWYSADVLSRDKSDKTAKRIRRISITDRLLRHPGRLSMVYF GALIIIVTGLLLLPISTSDIIFTNFPIAFFTAVSALSTCGIPVVNTGEYWSMFGQVVVLF SIQFGGLGVMTFASMVALGVSRRLKVSQRMLTANELGTTKLSEVKGVLTVVLGTSIIAEV LTFVLLLPDLFRVNHGNMGRTLWQALFYAVSAYNNTGFTPDATGLHVNRWGVGLPILISA FIGTLGFPVVLNLVQCARRRLSPKRWTLHTKLTLVTTAVLVATSLAWFLLVEWSNTGLFP ADDPGMKMRRAMSAAVMPRSAGFDISWVPEVTNETKVFMSILMFIGAGSSSTAGGIRVTT FAVILLICRAAFTGHRDVTVFRRRIPRRIQMTAVSVTTACFALVMVGAMMLMFTTGCAFV DAVFEACSAFSLGGYSVGVASAGNPASLFILSAEMIVGRLGPLTIAYSISRPMAPEPIRY PQENIIVG >gi|316916715|gb|ADCN01000009.1| GENE 63 59792 - 60814 1110 340 aa, chain + ## HITS:1 COG:Cgl1379 KEGG:ns NR:ns ## COG: Cgl1379 COG0061 # Protein_GI_number: 19552629 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Corynebacterium glutamicum # 54 288 72 305 320 216 47.0 4e-56 MAKRNAVVVTHTRLRQTGTVVAEAVSQLRVAGFEVAIIDNTEAPDFGVQPPCVSDDTEIV VVLGGDGTILRAAELVHCTQVPILGVNMGHVGFLAEFESFQIDEAIRRVSTHDYSIDERM IAHVDVWLPGATKPIEDWALNDITLERADRGKMVELSIRVDDVEMNSFGADGVIVSTPTG STAYAFSAGGPVMWPNVKALQLIPLAAHALFARPLIIGSGSTFTIDILDDSMSEGWICCD GRRQRALPQGTRVMVRESRDTLRLARLSGVPFTNRLVSKFDLPVVGWREHARNEASSQSL HHGHTFPAAAYAAGVAVAGDAGVAGTEPDKPGERDGKAGS >gi|316916715|gb|ADCN01000009.1| GENE 64 60814 - 62640 2183 608 aa, chain + ## HITS:1 COG:Cgl1380 KEGG:ns NR:ns ## COG: Cgl1380 COG0497 # Protein_GI_number: 19552630 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Corynebacterium glutamicum # 1 595 1 574 593 261 35.0 2e-69 MLEELDIRNLGPIREATIAPAAGMTAITGETGAGKSMLLSAIRLVSGGAAESSRVSAGAD EAWAQAIFALSDDAVASEHSGDTNDAGSGDADSGFTGAAAAVAKAHDAGVDPEDGELFLS RTVRASGRSRAVLGGKSVPRSVLGAIAGELVTIHGQTDQLKIAASSRQREFLDRVAGDEA ELAAYRKAWDALAAMDERLERLRSQESSARQQADYLRESIDRINRIDPQPGEDEELKARR ERIENAADIAQGVGSALGALDASQVDVDAADGASAVELINHAVTSLRAIRVGGTFSEQAD RLESINADLGDVVFALSQELGDEGSVEDLDQINGRIHELGDLARRWGPTLADVLAWRDKA AFDLEDLDASPEKVAELESERQTLYDAALAAADVLSAARVAAAADLGARVTEELGSLAML GASLEVRVTPRDKADDPLGPYGRDDIAFLFTPFEGSPQLPMGKSASGGELSRLMLALELV AADTRGGADQTFIFDEVDAGVGGKAAVELGKRLARLARSAQVIVVTHLAQVASWADAQFV VTKEPPDADDDDLGVVTTIAEVNGETRVHEIARMLSGSESEASLDHARELLSDSRLTLPL AGAGAAGD >gi|316916715|gb|ADCN01000009.1| GENE 65 62670 - 63317 842 215 aa, chain + ## HITS:1 COG:CAC3231 KEGG:ns NR:ns ## COG: CAC3231 COG0637 # Protein_GI_number: 15896477 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 3 210 6 212 215 164 43.0 9e-41 MTKAAIFDLDGTLLDSMGVWDQVDIDFLNKRGIEVPPDYMTKVSAMQFRQIAEYTIARFG LTDTPEELMQEWDDMASVAYSTTVEAKPGALDYLRDLKASGVKLGVATSLPPHLREPALR HVGMFDLFNDIVSVDDANDVGKDQPDVYLLAAKRLGAAPVDCTVFEDLLVGMKSAKSVGM KVWAMHDDSSASDWPEICHLADGVLFDFHDAPRVL >gi|316916715|gb|ADCN01000009.1| GENE 66 63395 - 63802 462 135 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 133 86 215 216 117 45.0 6e-27 MGSKEIVAWDVSRHPDLAQQQRLLAMLEEKLPEGADPILHSDMGWQYQHDWWRNRLGELG IRQSMSRKGNCIDNAATEQVFGHLKDEFYTGREFASYEEFKSELDAYIIHWNTRRRQIRL EGHTPEEFRNMSLTA Prediction of potential genes in microbial genomes Time: Fri May 13 12:37:45 2011 Seq name: gi|316916632|gb|ADCN01000010.1| Bifidobacterium sp. 12_1_47BFAA cont1.10, whole genome shotgun sequence Length of sequence - 100546 bp Number of predicted genes - 89, with homology - 85 Number of transcription units - 53, operones - 23 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 273 164 ## BLD_0318 transposase - Prom 487 - 546 4.4 + Prom 437 - 496 7.8 2 2 Op 1 8/0.000 + CDS 549 - 923 556 ## COG1725 Predicted transcriptional regulators 3 2 Op 2 . + CDS 945 - 1865 1082 ## COG1131 ABC-type multidrug transport system, ATPase component 4 2 Op 3 . + CDS 1872 - 2585 330 ## BLD_0789 cation transport ATPase 5 2 Op 4 . + CDS 2660 - 3301 288 ## Blon_1852 hypothetical protein + Term 3326 - 3373 12.6 - Term 3317 - 3356 9.1 6 3 Tu 1 . - CDS 3377 - 6163 3859 ## COG0474 Cation transport ATPase - Term 6608 - 6648 9.1 7 4 Tu 1 . - CDS 6683 - 8212 2559 ## COG0498 Threonine synthase + Prom 8265 - 8324 3.0 8 5 Tu 1 . + CDS 8396 - 9097 966 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 9113 - 9152 6.7 9 6 Tu 1 . - CDS 9126 - 9197 84 ## 10 7 Op 1 . + CDS 9219 - 10514 1664 ## COG0014 Gamma-glutamyl phosphate reductase 11 7 Op 2 . + CDS 10511 - 11092 823 ## BLD_0783 hypothetical protein 12 7 Op 3 . + CDS 11089 - 11874 705 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 13 8 Tu 1 . - CDS 11972 - 13174 796 ## COG1472 Beta-glucosidase-related glycosidases - Prom 13344 - 13403 2.8 14 9 Tu 1 . + CDS 13347 - 16586 4488 ## COG1615 Uncharacterized conserved protein + Term 16669 - 16709 11.5 + Prom 16633 - 16692 2.6 15 10 Tu 1 . + CDS 16720 - 17217 629 ## COG1247 Sortase and related acyltransferases + Prom 17247 - 17306 2.0 16 11 Op 1 7/0.000 + CDS 17413 - 18012 838 ## COG0193 Peptidyl-tRNA hydrolase 17 11 Op 2 . + CDS 18002 - 21586 4825 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) + Term 21616 - 21660 12.2 + Prom 21625 - 21684 2.4 18 12 Op 1 . + CDS 21735 - 22673 946 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Prom 22728 - 22787 1.9 19 12 Op 2 . + CDS 22824 - 24122 2229 ## COG0148 Enolase + Term 24165 - 24212 12.4 20 13 Op 1 . + CDS 24213 - 24824 837 ## BLJ_0685 septum formation initiator 21 13 Op 2 4/0.000 + CDS 24821 - 25387 582 ## COG1507 Uncharacterized conserved protein 22 13 Op 3 . + CDS 25450 - 26451 1145 ## COG0248 Exopolyphosphatase + Term 26495 - 26521 1.0 + TRNA 26610 - 26691 60.2 # Leu TAA 0 0 + Prom 26612 - 26671 80.3 23 14 Op 1 . + CDS 26881 - 27450 817 ## BLD_0771 hypothetical protein 24 14 Op 2 . + CDS 27597 - 29057 1428 ## COG1760 L-serine deaminase 25 15 Op 1 . + CDS 29199 - 29606 649 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Term 29629 - 29662 1.1 26 15 Op 2 . + CDS 29705 - 30184 892 ## COG0782 Transcription elongation factor + Term 30197 - 30234 9.4 27 16 Tu 1 . - CDS 30239 - 31183 952 ## COG1272 Predicted membrane protein, hemolysin III homolog + Prom 31185 - 31244 3.0 28 17 Tu 1 . + CDS 31353 - 32081 523 ## BL1013 hypothetical protein 29 18 Tu 1 . + CDS 32244 - 33731 1915 ## COG3920 Signal transduction histidine kinase + Term 33754 - 33784 3.0 - Term 33734 - 33778 10.5 30 19 Op 1 . - CDS 33804 - 34082 474 ## BLJ_0697 transcription factor WhiB - Prom 34130 - 34189 2.4 31 19 Op 2 . - CDS 34196 - 36022 820 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 36098 - 36157 3.1 32 20 Tu 1 . - CDS 36191 - 37102 869 ## COG1316 Transcriptional regulator 33 21 Tu 1 . + CDS 37119 - 37439 154 ## BLJ_0699 hypothetical protein + Term 37535 - 37569 -0.1 + Prom 37783 - 37842 4.4 34 22 Op 1 . + CDS 37875 - 38174 388 ## BLJ_0701 transcription factor WhiB 35 22 Op 2 . + CDS 38218 - 41313 2402 ## BL1007 hypothetical protein 36 22 Op 3 . + CDS 41310 - 42851 1309 ## BLD_0759 hypothetical protein + Term 42959 - 42986 -0.1 37 23 Tu 1 . - CDS 42954 - 43316 276 ## BLD_0758 hypothetical protein 38 24 Tu 1 . + CDS 43471 - 44277 685 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 44449 - 44489 0.0 39 25 Tu 1 . + CDS 44776 - 45009 81 ## BL1003 hypothetical protein 40 26 Op 1 . - CDS 44925 - 45311 297 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 41 26 Op 2 40/0.000 - CDS 45379 - 46413 1121 ## COG0642 Signal transduction histidine kinase 42 26 Op 3 . - CDS 46452 - 47174 989 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 43 26 Op 4 . - CDS 47210 - 49462 2965 ## COG0296 1,4-alpha-glucan branching enzyme - Prom 49558 - 49617 2.2 + Prom 49544 - 49603 3.5 44 27 Op 1 1/0.000 + CDS 49661 - 50233 715 ## COG1329 Transcriptional regulators, similar to M. xanthus CarD + Term 50243 - 50301 7.9 45 27 Op 2 . + CDS 50342 - 50866 363 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase - Term 50859 - 50899 6.2 46 28 Op 1 42/0.000 - CDS 50918 - 51751 1191 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 47 28 Op 2 25/0.000 - CDS 51818 - 52708 184 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 52767 - 52821 15.4 48 28 Op 3 . - CDS 52881 - 54077 1330 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Prom 54101 - 54160 4.1 49 29 Tu 1 . + CDS 54181 - 55056 1197 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase + Prom 55065 - 55124 1.7 50 30 Op 1 3/0.000 + CDS 55176 - 56651 2491 ## PROTEIN SUPPORTED gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 + Term 56683 - 56727 9.7 51 30 Op 2 . + CDS 56826 - 57443 616 ## COG0237 Dephospho-CoA kinase 52 30 Op 3 . + CDS 57455 - 59566 2847 ## COG0556 Helicase subunit of the DNA excision repair complex 53 31 Op 1 . + CDS 59735 - 60721 1737 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Prom 60774 - 60833 3.2 54 31 Op 2 . + CDS 60889 - 62331 2295 ## COG0469 Pyruvate kinase + Term 62374 - 62420 17.5 - Term 62357 - 62411 17.9 55 32 Tu 1 . - CDS 62479 - 63078 775 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 63300 - 63359 76.5 + TRNA 63283 - 63356 48.2 # Leu CAA 0 0 + Prom 63285 - 63344 79.3 56 33 Op 1 . + CDS 63424 - 64209 1237 ## COG3707 Response regulator with putative antiterminator output domain 57 33 Op 2 . + CDS 64255 - 67122 2876 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 58 34 Op 1 . + CDS 67292 - 68212 712 ## COG0327 Uncharacterized conserved protein 59 34 Op 2 . + CDS 68258 - 68932 814 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 60 34 Op 3 . + CDS 68986 - 71127 2841 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 61 35 Tu 1 . + CDS 71265 - 71465 150 ## BL0981 hypothetical protein 62 36 Op 1 . + CDS 71614 - 72099 333 ## BLD_0733 putative transcriptional regulator 63 36 Op 2 . + CDS 72103 - 72753 835 ## COG4832 Uncharacterized conserved protein - Term 72819 - 72852 -0.2 64 37 Tu 1 . - CDS 72923 - 73477 371 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) - Prom 73532 - 73591 1.9 65 38 Tu 1 . - CDS 73688 - 73816 71 ## - Prom 74036 - 74095 6.0 - TRNA 73941 - 74017 86.5 # Pro TGG 0 0 - Term 74192 - 74265 33.1 66 39 Tu 1 . - CDS 74289 - 77360 3717 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 77426 - 77485 4.8 67 40 Tu 1 . + CDS 77402 - 77608 188 ## gi|227546041|ref|ZP_03976090.1| hypothetical protein HMPREF0175_0464 + Prom 77617 - 77676 3.8 68 41 Tu 1 . + CDS 77725 - 79212 2422 ## COG2211 Na+/melibiose symporter and related transporters + Term 79265 - 79295 1.0 69 42 Tu 1 . - CDS 79382 - 80098 99 ## BLD_0727 hypothetical protein 70 43 Tu 1 . + CDS 79772 - 80143 223 ## Blon_2123 beta-galactosidase (EC:3.2.1.23) 71 44 Tu 1 . - CDS 80620 - 80715 79 ## + Prom 80701 - 80760 4.6 72 45 Op 1 . + CDS 80861 - 82033 1396 ## BLJ_0753 hypothetical protein 73 45 Op 2 . + CDS 82060 - 83397 1330 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 74 45 Op 3 . + CDS 83477 - 83548 70 ## - Term 83480 - 83523 14.0 75 46 Op 1 21/0.000 - CDS 83568 - 84797 2007 ## COG0282 Acetate kinase - Prom 84848 - 84907 2.9 - Term 84872 - 84919 7.0 76 46 Op 2 . - CDS 84932 - 86602 2750 ## COG0280 Phosphotransacetylase - TRNA 86800 - 86875 83.4 # Ala GGC 0 0 - TRNA 86962 - 87037 83.4 # Ala GGC 0 0 - Term 87207 - 87236 0.5 77 47 Op 1 6/0.000 - CDS 87256 - 87954 640 ## COG0406 Fructose-2,6-bisphosphatase 78 47 Op 2 . - CDS 88087 - 88500 540 ## COG0799 Uncharacterized homolog of plant Iojap protein 79 47 Op 3 11/0.000 - CDS 88504 - 89886 2059 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 90074 - 90133 1.7 - TRNA 89981 - 90051 50.4 # Gln TTG 0 0 - Term 89935 - 89975 11.0 80 48 Op 1 . - CDS 90168 - 91187 1138 ## COG0462 Phosphoribosylpyrophosphate synthetase 81 48 Op 2 . - CDS 91276 - 93150 1592 ## COG1835 Predicted acyltransferases 82 49 Tu 1 . - CDS 93326 - 94807 1889 ## COG4868 Uncharacterized protein conserved in bacteria - Prom 94843 - 94902 4.8 - Term 94865 - 94907 11.9 83 50 Op 1 . - CDS 95054 - 95437 484 ## BLD_0714 hypothetical protein 84 50 Op 2 . - CDS 95430 - 96686 317 ## BLD_0713 hypothetical protein 85 50 Op 3 . - CDS 96714 - 97367 370 ## BLD_0712 hypothetical protein - Prom 97406 - 97465 3.2 + Prom 97437 - 97496 3.4 86 51 Op 1 . + CDS 97519 - 97974 332 ## BLD_0711 hypothetical protein 87 51 Op 2 . + CDS 97971 - 98843 410 ## BLD_0710 putative permease + Term 98874 - 98937 11.8 88 52 Tu 1 . - CDS 98963 - 99451 458 ## COG3436 Transposase and inactivated derivatives 89 53 Tu 1 . - CDS 100107 - 100544 153 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 Predicted protein(s) >gi|316916632|gb|ADCN01000010.1| GENE 1 3 - 273 164 90 aa, chain - ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 89 1 89 171 105 66.0 5e-22 MSRKRRGSYDVEYMRIVVGLIRDGIGAKSLARRLGVSKETTREWLLSYRIGGEAALMGER EGNRKYDYETKLAAVLDHLERGMSRPEVMV >gi|316916632|gb|ADCN01000010.1| GENE 2 549 - 923 556 124 aa, chain + ## HITS:1 COG:BH0651 KEGG:ns NR:ns ## COG: BH0651 COG1725 # Protein_GI_number: 15613214 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 1 107 1 107 123 88 49.0 4e-18 MKLIISSVSGEPIYEQIKTQIRSAVLSGELKAGEALPSLRKLAKELRISVLTVTRAYNEL ADEGVVQNIQGKGTFVMDKGNELMQRQLETQIRESLAEASRGAKAAGIPLDALDRMLEEE YRKK >gi|316916632|gb|ADCN01000010.1| GENE 3 945 - 1865 1082 306 aa, chain + ## HITS:1 COG:BH0652 KEGG:ns NR:ns ## COG: BH0652 COG1131 # Protein_GI_number: 15613215 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 12 291 5 278 288 199 38.0 7e-51 MTAISESDAMALQVTDVTKHYDSGFTLDDVTFDLPKGYIMGLIGPNGAGKSTLIKLILNM IHRDAGSIHVLGLDNIANEELVKEQLGVVFDFSYMHELWQVKNIERIVAPLYPSWDGGCY RKYLDTFGLGDAQNGKKHIKDLSRGMQMKLMLAIALSHDAKLLILDEPTSGLDVLARDEL MDILHAYIEDGEHSVLFSTHITADLERAADFITYITDGRLYYTGPKDEFEESFRLVKGGP DELAQLPADVVLGSHTYATGFDALVRSDRLDAVASVVSGLVVESASIDDIIRLTNAHDSN RDLSGR >gi|316916632|gb|ADCN01000010.1| GENE 4 1872 - 2585 330 237 aa, chain + ## HITS:1 COG:no KEGG:BLD_0789 NR:ns ## KEGG: BLD_0789 # Name: mgtA3 # Def: cation transport ATPase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 237 1 237 237 385 99.0 1e-106 MEAILRVSRSRQHALTTALRVDMAYLCVDVRTVFSLLLAPLFSVIFQGEAYGDGFGYRMG VIMTVFICAMWVLTMAVADLQNGYRLRGIIPSSRKNQVAARYVVGLVISVLSIAMIVLID GLQVLVNPDWSFAGNLWAAPLGGFCTALMVALIVPTGYLWTKLGGLRVTMMVIYVVVLAV SILPSILPASVTRGLAHAANAIIAQRLWLVIAVLTTTVVAYGISYVIASRIFASREW >gi|316916632|gb|ADCN01000010.1| GENE 5 2660 - 3301 288 213 aa, chain + ## HITS:1 COG:no KEGG:Blon_1852 NR:ns ## KEGG: Blon_1852 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 213 25 237 237 288 94.0 9e-77 MVFLLVFPVLSIVVSLVMISTHVDEHVASGLMGGLGGLASVMAYMSALGPAASEESAGHS AMRGLIPVSRTAQVVGRYLFLLVVGLLWALDVVICGGIFIVFGDIADMGWIGALASGASI FALAIILGSVLLACAYRFTFRKMMMAFGAVMVGLYAVIALLARLPVDWQWLLLNIADFLT IWWHTALVLAVLCLLAFFGSMLIAIRIYRAKEL >gi|316916632|gb|ADCN01000010.1| GENE 6 3377 - 6163 3859 928 aa, chain - ## HITS:1 COG:MTH1001 KEGG:ns NR:ns ## COG: MTH1001 COG0474 # Protein_GI_number: 15679019 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 27 895 21 829 844 503 36.0 1e-142 MTTANGQTPAPFMQDAPAVISTLGTDAHQGLTSEQAAHNLNQYGPNAFTKPKPESMLSRI AKTAADPMLIMLMIAAAITLGVNITRAMAGGHADILECVGIFFAIALSVTITVVMEGRSA KAFEALNDINDDTTVTMVRDGEVTLVSQRDITIGDVLQISTGDKLPADARLIESNDLTAD ESALTGESVPSAKAADAVFTDPKTPVADRTNMLYSGCFVTAGNGRAVVTAVGDDTEFGKI ARELRAANTGMTPLQEKLAKLGKVIAVVGSIVAALVFVLQVARFVASGTASFDTISEAFI TSITLIVAAVPEGLPTIVAACLAVNIIKMSKQNALVKKMVACETIGCINVICSDKTGTLT QNRMTVIEAYNAPGRALEKPEQIRNRMLLENFCVNGTADVTFPGATEAEAGAMPEFIGNP TECALLAAAHKAGLDYRIRRERATVLHTYPFSSETKSMTTVVRDGDGITVFAKGSPEKML DLCAVDAKTRGEIEREIAKFQAQSCRVLGFAHRHISDKDADTAALDYAADRANLESGMMF DGFVAIVDPLREDVPGAVERCRKAGIELKMLTGDNIVTATAIANELGILDERHIAVEARQ IEEMSDEELSREIGRIRVIARSTPVIKMRVVNALKAQGNVVAVTGDGINDAPAIKNADVG IAMGIAGTEVSKEASDIVMLDDSFATIVKAVHWGRGIYENFQRFIQFQLTVNLSSVVVVL ASLFSGLAAPFTALQLLWVNIIMDGPPALTLGMEPIRDNLMDRRPTRRDAGIVSRGMLER IIVSGAFIAVVFMAQSWTNFMGGTAEQQSTILFTLFVVFQLFNAFNSRELGNASLFANLL RNKVMIGVFALMFALQVLVVQFGGAMFRTVPLPIDMWLKIIAVGFGVVVLQEVIKTVKRA AAAIRARRTANESDSQQPHQPIALDLVD >gi|316916632|gb|ADCN01000010.1| GENE 7 6683 - 8212 2559 509 aa, chain - ## HITS:1 COG:L0092 KEGG:ns NR:ns ## COG: L0092 COG0498 # Protein_GI_number: 15674085 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Lactococcus lactis # 14 504 1 491 496 449 48.0 1e-126 MWIHHPFQAEGFIVTTTFHSTRSTTDSLTAKQAIRKGIADDGGLFVSDALGKTKVDVASL PGKSYQQIAAEVLGALLPDFTAEELGQCIADAYGEQWSDERITPLKPLGDDYVLELFNGP TSAFKDVALQILPRFMAHTTPADGDADEKIMILTATSGDTGKAALAGFADAPGTAITVFY PEGKVSQVQELQMTTQAGSNVQVAAVEGNFDDAQSAVKRIFGDRALAERLAGNSHVVLSS ANSINVGRLVPQVVYYFSAYAQLLADQVINVGDEVEFVVPTGNFGDILAGYYAKLLGLPV KHLVVASDKNNVLFDFLTTGTYNRQRPFFQTISPSMDILISSNLERMLYYLSEGDTRLIS MLMNDLNKWGTYEIPEELLAKIRQIFGTGWADEDQVRESIKHCWDENHYVIDPHTACGYY LLEQMPRDPLTPRVLLSTASPYKFPRVVNEALGFDATGTDFECMDVLAHETGTTAPAALR GLETADVRFKDVVAIDGMEDYVEKAAQAL >gi|316916632|gb|ADCN01000010.1| GENE 8 8396 - 9097 966 233 aa, chain + ## HITS:1 COG:Cgl0969 KEGG:ns NR:ns ## COG: Cgl0969 COG0112 # Protein_GI_number: 19552219 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Corynebacterium glutamicum # 94 230 293 429 434 180 67.0 3e-45 MTASPLAQKATDAFNAPICETDPEIAELLDSELGRQRSGLEMIASENFVPRAVLQCQGSV LTNKYAEGYPGRFYHAEAYGVNPETFRIDPEIIRQRTFDGAKILAERLLADDVKANGIFV LTGGTDVHLVMVDLRNSEMDGQQGEDLLAACGITINRNTVPFDPRPASVASGLRIGTSAL ATCGFGPKEYEEVADIIGTALAAGPSADVTALKARVDKLAEDFPLYPDLDQIH >gi|316916632|gb|ADCN01000010.1| GENE 9 9126 - 9197 84 23 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRIARFDPYCTEDSRGYKRGSL >gi|316916632|gb|ADCN01000010.1| GENE 10 9219 - 10514 1664 431 aa, chain + ## HITS:1 COG:CAC3254 KEGG:ns NR:ns ## COG: CAC3254 COG0014 # Protein_GI_number: 15896499 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Clostridium acetobutylicum # 8 430 2 417 418 378 47.0 1e-104 MSDELSPEVFDAVCRQADQAARAQERLAQANTEAKNELLLAIADALDEHAADIEAANALD MLESKENGMDAGKLDRLLFDVPRVAAAAQGVRHVATLPDPVGEIVRGYNLPNGLRLTQTR VPMGVIGMIYEARPNVTVDVASLCLKSGNAALLRGGHAAERTNAATLGVIAPVLEAHGFE SALVQSVDQYGRAGATAMMEARGHIDVLVPRGGAGLIQAVVRNSKVPVIETGAGNVHIYI DKSGDLAKAILIIINAKTQRVGVCNAAEKLLVHKDVAAEFLPQIAAALAEANVVLQADTT SYDIISGAAIEGLDLNRATEEDWDTEYLALKMGIKVVPDLDAAIDHINTHSTGHTESIIA EDYAAIEEFTKRIDSAVVMVNASTRFTDGGVFGFGAELGISTQKMHARGPMGLREMTTTK WIGYGTGQVRA >gi|316916632|gb|ADCN01000010.1| GENE 11 10511 - 11092 823 193 aa, chain + ## HITS:1 COG:no KEGG:BLD_0783 NR:ns ## KEGG: BLD_0783 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 193 1 193 193 328 98.0 8e-89 MNEDGNMNITADTANKASELRPDIDLNDPKLGLKIAAERLSIVRYVFLVQIEDGIASAAQ RASLEYADAVLIGWPETDSPEVADLDDAQLKIVREHMELMEGYIGKYSQMEHDGDLDGMT DTLIRITERVAEVRRLYQPDFPLPTFAEIRRVVQDEWDEDMGKIDPREDNPTAGEIEEET ESADDAAGEGDQA >gi|316916632|gb|ADCN01000010.1| GENE 12 11089 - 11874 705 261 aa, chain + ## HITS:1 COG:Cgl2301 KEGG:ns NR:ns ## COG: Cgl2301 COG1057 # Protein_GI_number: 19553551 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Corynebacterium glutamicum # 66 260 8 204 218 253 65.0 3e-67 MSGVTDSHKTAASVQSEKSVESAEPAEIVAVTQGETERRMSDLSAPAGASSHGKGRLSAR GNWHTRLRVGIMGGTFDPIHNGHLVAASEVAWVYDLDEVIFVPTGRPVFKLDKHVTNAED RYLMTVIATASNPKFTVSRVDIDRPGVTYTIDTLRDIRAQHPDAELFFITGADAVAEIMQ WKDADLMWDLAHFVAVTRPGYSSPDGVTLPEGKVDTLEIPALAISSTDVRRRAEHDEPVW YLVPDGVVQYIGKHGLYSYED >gi|316916632|gb|ADCN01000010.1| GENE 13 11972 - 13174 796 400 aa, chain - ## HITS:1 COG:L100350 KEGG:ns NR:ns ## COG: L100350 COG1472 # Protein_GI_number: 15672482 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Lactococcus lactis # 1 399 15 401 403 224 35.0 2e-58 MATICALAVVLAGVAAYGWHVGWFAKSTSNGNTTTPQTSQTSALPRADVPSPKKNEPAAQ AQRAVSAMTLEERVGQLVMVPLLAGSDPSSLASTITDEHIGSAILIGNWNTGADTVKTAT AQLQGYAPAGNRLIIATDQEGGQVQHLTGTGFDTMPSAVEQGTMSADALRQSAGTWGSQL AAAGINVDLAPVLGTVVGDRASNAPIGALDRDFGLDAAGNAEHGIAVIEGLRDAQVGAAV KHYPGLGAVSGNTDFTTEGILDTTTTLGGAEAGAFDQAITKTDPAMVMMSLATYQSIDPN NPAVFSSTIIDGHIRNALKYTGVVISDSMSAEALSSYDVSQLGVKLVEAGGDMSCIGQTD YVKPIVDGLNERAKSDPAFASKVTAAATRVMALKIKMGLA >gi|316916632|gb|ADCN01000010.1| GENE 14 13347 - 16586 4488 1079 aa, chain + ## HITS:1 COG:Cgl0762 KEGG:ns NR:ns ## COG: Cgl0762 COG1615 # Protein_GI_number: 19552012 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 100 1076 21 961 967 577 35.0 1e-164 MSFNDPFSILFGNGGDSRRNNANNDDPIILDVEADGDGPARNTNAGPSGSSRPPRGPANP RITRKPASGGSGGSRGSKILIGVVLALAIIVGLFFGLSRFITDLMWYGQLGFQSVVWTQL GVKIGLWVAYALLMALTGFVSAWLAIRARPDSADGSTIRINGDVVEVGKSVSSKTARRVA VVISLIVGVIFGSQFNANWSEILLMFNAQSFGTTDPQFGLDNGFYVFVLPGLKLVLAAVA MLLGVGLVFSVVTHVLMGGIRITMPVNGRGLFSITKRCRRQLGIWLMLNMFAWAVRQMIG VFDQLTVQGSRITGASYTAVHANIPVTFIMAALTAILGVVLGIWLMRSHTLEGQASIGVR ASAALKAWRVPVTSIAVVVVVGLVLTVAWPVLLQRFRVNPNAQEMESTYIQRNIDATRAA YGLDKLKTEQYKVTDKGEQGALAKEGDTTAQIRLLDPQVVSPTFKQLQQSKQYYTFADTL AVDKYEIDGVSQDTVIAARELDLAGNDNRNWVNDHTVYTHGYGVVAAYGNKVTADGQPEF FESGIPTQGKLTESEKYEPRIYFSPNTTEYSIVGAPEGTQAWEFDYPTGSEGALTTFKGD GGPSVGNLFSRILYAIRFGSDQILFSDRVTSESQILYDRSPKERVAKVAPYLTLDGRVYP AVVDGRVKWIVDGYTTSDAYPYSQMTDLGSATKDSTTVSSATVSSLGSQKANYIRNSVKA TVDAYDGSVDLYVWDQSDPVIKAWEKIFPGQYHQLSDISGDLMSHMRYPESLFKVQRELL SKYHVTSANQYYSGEDFWQTPVDPTESQSQQDQDILQPPYYLTLQTGGTKEPVFSLSSTY IPAGQSTREILTGFLSVDSDAGNEKGKIGSNYGTIRLQELPKDSNVPGPGQAQNNFNANA DVSKELNLLQSGDTQVVRGNLLTLPLGGGLVYVQPVYVKSSGATSFPLLKKTLVAFGDQV GFADTLDEALDQVFGGDSGAAAGDAENVSGDGSSGDQSSGISGDQSGSDTNGGQSGTTDG KSDSGSSSDRSPELQQALNDAAQAMKDSQSAMKNGDWTAYGKAQKELEDALNKAIELDK >gi|316916632|gb|ADCN01000010.1| GENE 15 16720 - 17217 629 165 aa, chain + ## HITS:1 COG:sll1647 KEGG:ns NR:ns ## COG: sll1647 COG1247 # Protein_GI_number: 16329646 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Synechocystis # 5 158 8 161 172 99 35.0 3e-21 MPYTFRPAVESDVQAIADIYNASVMAGGATADLTPRTFDQRRAWVESHTPPYGVFVVESE DGSIIGFGALSVFYDRAGYDGVTDLAYYIDPAWQGRGVGTFMLDRLLTEALARHMRKACG IIFADNAGSIALMHRFGFTQFGLMPAAATDSTGTMRDMSYWYLDL >gi|316916632|gb|ADCN01000010.1| GENE 16 17413 - 18012 838 199 aa, chain + ## HITS:1 COG:CAC3217 KEGG:ns NR:ns ## COG: CAC3217 COG0193 # Protein_GI_number: 15896464 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Clostridium acetobutylicum # 6 198 2 184 187 150 43.0 2e-36 MASDFWLIAGLGNPGKKYEDTRHNMGFMTADVLAERWTVNFADHKGLAMLGKSVMNLDGR TVKFFLAKPLTYMNDSGNAVASISAYYQIEPDHIVVIHDDMDLEFGRIKVKAGGSAGGHN GIKSIDRSLGTPKYARVRMGVGHSKRGANAHDNTVNWVLGGFGPDQRKQLPEFLADGADA AEDIIFHGLAKTQEKFNGR >gi|316916632|gb|ADCN01000010.1| GENE 17 18002 - 21586 4825 1194 aa, chain + ## HITS:1 COG:MT1048 KEGG:ns NR:ns ## COG: MT1048 COG1197 # Protein_GI_number: 15840448 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Mycobacterium tuberculosis CDC1551 # 54 1185 43 1206 1234 1041 50.0 0 MAGEATHPDLINGSLAGILSELEQDKTFLKLAAGDIEASDDVDNSVLAGIPEGLRPALAA AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA DTVASRMAVFRRLKHPSDTDSMFGSIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL DEAAKRLIENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS DQRTYGDGLKTIWATACRELQLTDAVRTRAKALVGSIPNAEDMLESIANAIPVEGMESLM PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGAGAPI SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG IEGLLDAGFHVTITAAAAGTLARLKRAINTTGIANFDVIRSQAIDGFVDKAAKIALLTER DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH EIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA MSRFQTTKEINEAIEGLETGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETL KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV RRELLRGGQVFYVHNRVQDISSIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA VEKYKEPEENVEPVAVSIDLPIEASIPIEYIDSDKLRLEAYRKLASARNEADLKDLEEEL TDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG TQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSSSKRQSRL >gi|316916632|gb|ADCN01000010.1| GENE 18 21735 - 22673 946 312 aa, chain + ## HITS:1 COG:all2316 KEGG:ns NR:ns ## COG: all2316 COG0667 # Protein_GI_number: 17229808 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Nostoc sp. PCC 7120 # 20 303 10 281 284 136 31.0 4e-32 MSETTTNRTNQSATTATLAGYEIPRLGMGTMALAIEGRPSNRNQAIETIHAALDAGVRYL DTAWSYYLPSAPGTGEPEDMGYGEYLVRDALHSWHGPREQVLVATKTGWLRTLDGSGNYG WQADARPETMIANAKESASRLGVDTLDLLYSHCNDPQVPYEDQMGALKQLVDEGVAKAVG ISRIDNADIETARNILGDRLVAVQNQFSPVHRDPEHTLETCEKLGLAFVCWSPLGGFLDP FNEHLFDRFREVAKIHDCSYQRVTLAWELAQYQYLFTIPSARNPQEIQDSFKAGELKLSD SEIGYLNGKDVD >gi|316916632|gb|ADCN01000010.1| GENE 19 22824 - 24122 2229 432 aa, chain + ## HITS:1 COG:lin2549 KEGG:ns NR:ns ## COG: lin2549 COG0148 # Protein_GI_number: 16801611 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Listeria innocua # 1 428 1 430 430 492 60.0 1e-139 MAVIESVYARQILDSRGNPTVQVVLDTEDGAQGLGLVPSGASTGEAEAWERRDGDKSVYG GKGVLNAVKAVNEVIAPKVIGMDAADQRALDDLMIELDGTPNKGKLGANAILGVSLAALY ASAESAGLPLYRYIGGTNGHILPVPNMNIMNGGAHADFATDIQEYMISPYGFDTYSEALR AGVEVYHTLKNVLKKEGLNTGLGDEGGFAPKMKSNEDSLKYIMDAISAAGYEPGKQIGIC LDVASSEFYNKETGKYRFDGEERDSAYMLDYYENLINEYPIVSIEDPFNEEGWEDWAAIT ARLGDRLQFVGDDLLVTNPARLQKAIDLGAANSLLVKLNQIGSVTETLDAIELATANGYT SMVSHRSGETPDTTISDLAVAKNTRQIKTGAPARGERVAKYNRLLEIEEELGSTAQYAGY SAFKACKKYLAK >gi|316916632|gb|ADCN01000010.1| GENE 20 24213 - 24824 837 203 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0685 NR:ns ## KEGG: BLJ_0685 # Name: not_defined # Def: septum formation initiator # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 203 9 207 207 288 95.0 8e-77 MSKSSRTGKPGKTGKARVRKKGSAGPIAFFVSLFIIALGTIQLVSTFHTYALNLAELNGL KREEASLIAQKQELENDIKRWDDKAYITAQARERLGFVFPGEQAVRVLHPEAVTGSDSES QKTEDSSSSNKKVLPWYSELSYSLKKADEPVTDSESGKSDISGSSDSSSNDSSKRSDKSD QNTQSDQNTQQNTQQNTGEGTQQ >gi|316916632|gb|ADCN01000010.1| GENE 21 24821 - 25387 582 188 aa, chain + ## HITS:1 COG:MT1053 KEGG:ns NR:ns ## COG: MT1053 COG1507 # Protein_GI_number: 15840453 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 25 176 6 150 163 129 50.0 3e-30 MTIDIAAKAKALVDTVLAEPANDHDIDLVQRQLGRYPRGMVAVGARCVCGRPLAVITRPV LPGGIPFPTTCYLTGPEAVKAASHVEAAGVMQQYNDMLALDEELKAAYEQAHNLYLAFRH ELAGRLGDSEEHIEGTSAGGMPVRVKCLHALLAQSLVMGPGVNPIGDLVLERVKDEFDPT VCRCTLDD >gi|316916632|gb|ADCN01000010.1| GENE 22 25450 - 26451 1145 333 aa, chain + ## HITS:1 COG:MT1054 KEGG:ns NR:ns ## COG: MT1054 COG0248 # Protein_GI_number: 15840454 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 8 324 6 315 319 199 42.0 6e-51 MSKESVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALER AYVAAREFAGVIAEHPIDGLRFVATSATRDAENREEFEDEIERILGVRPEVIPGTEEADL SFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVRMTER HLTNDPPTQTQIDEAVVDVDEHIDEAFRTVDAGKARTIIGVSGTVTTMTALAMGLKEYDH TVVDGHRLSLEDAYAVDDKFLRMTRAERREYKTIHPGRIDVVGGGAVVWSRVLARVSEAA KADHGEAIDSFVASEHGLLDGIVLDYGRRLLAQ >gi|316916632|gb|ADCN01000010.1| GENE 23 26881 - 27450 817 189 aa, chain + ## HITS:1 COG:no KEGG:BLD_0771 NR:ns ## KEGG: BLD_0771 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 189 1 189 189 292 100.0 5e-78 MASRWTDVERVEQGALPTMLAQAVIAGTALTVGAIACSGFYLSMIGNVAALLPWATIVIL IAVAFTYIVGFALLWCAEALTLRANDKLKPWLYGVVGLIGYGVWGMFVMSAMMNTLNQPL NGVVLSNGDVMALTVNYAVFGFIAFLLAQAYAPKIATKKGLTIGLMVVQIVLAIIGIIVL VMMFSALSH >gi|316916632|gb|ADCN01000010.1| GENE 24 27597 - 29057 1428 486 aa, chain + ## HITS:1 COG:RSp0045 KEGG:ns NR:ns ## COG: RSp0045 COG1760 # Protein_GI_number: 17548266 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Ralstonia solanacearum # 3 486 4 461 461 473 53.0 1e-133 MFSVLDMFTIGVGPSSSHTVGPMVAAHAFASSLQADHLVDRTARVKITLYGSLALTGLGH GTDRAAMAGLEGNLPATVDTDHMMHIREICALDDTLNLAGLKRIHFDYDRDVVFEQWKRM AAHPNGMRFQAFDAAASLVDEQVWYSIGGGFVRKGAPEDPMIGIHERPPEGASFADADES SSIDFGVEAPYPFSSCTELVSLCREHHLSIAELVWANETASRSGIQVRSDIDAIWRVMRA CVDHGCTSAEPTLPGGLDVPRRAPKMYRRLASNSDVLRRDSRRKDAVLESSDAAWVDLFA LAVSEENAGGGRIVTAPTNGSAGIIPAVLHYYWHFVDNANEQGVVTFLLTAGAIGYLFKR NASISGAEVGCQGEVGSACSMAAAGLAAVVGGTPEQVENAAEIGIEHNLGLTCDPVGGLV QIPCIERNAMAANTAINAVRMAMLGDGSHIVTLDQAIETMKQTGEDMMAKYKETSKGGLA VNVVEC >gi|316916632|gb|ADCN01000010.1| GENE 25 29199 - 29606 649 135 aa, chain + ## HITS:1 COG:alr0577 KEGG:ns NR:ns ## COG: alr0577 COG0545 # Protein_GI_number: 17228073 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Nostoc sp. PCC 7120 # 21 113 53 144 165 81 50.0 4e-16 MTDQMPQVNAEFGTTPVIEFPTPEAPKGLKVVELTEGDGPIVRRGDTVTVNYHGVVWGKD TPFDSSFDRHQPASFGIGVGQVIKGWDQTVPGHNVGSRLVVSIPPEYGYGSRGIPQAGIG GEDTLVFVIDIISTR >gi|316916632|gb|ADCN01000010.1| GENE 26 29705 - 30184 892 159 aa, chain + ## HITS:1 COG:MT1111 KEGG:ns NR:ns ## COG: MT1111 COG0782 # Protein_GI_number: 15840516 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Mycobacterium tuberculosis CDC1551 # 1 157 1 161 164 93 40.0 2e-19 MAEDKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSK NEGRITELTVKLRDSKIIENAPEGTVGEGSVVTIELNGNEMTYVLGSRDIVAGTDYDIMT PDSPIGKAIEGAKVGDVVSYTAPNGRELSVTVKAAKPLA >gi|316916632|gb|ADCN01000010.1| GENE 27 30239 - 31183 952 314 aa, chain - ## HITS:1 COG:CAC0882 KEGG:ns NR:ns ## COG: CAC0882 COG1272 # Protein_GI_number: 15894169 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Clostridium acetobutylicum # 104 310 6 214 214 130 38.0 5e-30 MASTTGDSEKTMHHDAHNSATIAEDATIASKRQAAIEAREQALQAKADAVRAKAQFKAEA IRAKAEEKARHKLAKAENRALKIEGIAPAEVERKIRLDVHGRPKPLMRGWIHAIAAPLSL AAGIVLICLAHGASLKWACAVFMTASLILFTNSACYHLGDWSPRVTDVLRRIDHVNIFLL IAGTYTPVSFALEPFWRNVIIISMWACTAIAIVIHVIWINAPRWLYTVVYIIFGIYGLAY MVMFWNSPYAGPAVVVLLCAGGACYILGAIVYALRKPDPWPRVFGFHEIFHCGTVAGYAC HMVAIYMVIVSLWQ >gi|316916632|gb|ADCN01000010.1| GENE 28 31353 - 32081 523 242 aa, chain + ## HITS:1 COG:no KEGG:BL1013 NR:ns ## KEGG: BL1013 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 242 1 242 242 334 100.0 1e-90 MVYCTECGFANEQGNAFCSQCGSPLEQPEANPAAPASPEPPAGRPGVDHTKAVVIVLIAL ICVVALVIGLFITHSMGLWGAQPQAQTSAQSTGADALDSADDGTTDSSDAKSKAKKNTSD SAKDKNSDDSSKKSSTEKSKPSTPVITSSQLSDIADSYSSSDVAVSAMVIDGTSADSSED ATIATTSQSGKQFVAADFYLPVYLAAQDNGDDNVKAQANAMMGSMDTAMPAIWWRLRISN CT >gi|316916632|gb|ADCN01000010.1| GENE 29 32244 - 33731 1915 495 aa, chain + ## HITS:1 COG:MT3316 KEGG:ns NR:ns ## COG: MT3316 COG3920 # Protein_GI_number: 15842807 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium tuberculosis CDC1551 # 1 485 1 489 501 283 38.0 5e-76 MADFSHILATRPDFDDEDREWLHHLVADWQVIADLSFADLLLLVQDGDGKYVVAEQCRPS TVMTLRAEDVVGNVMPDDMVGELDAAMLSSVVFRSTVLRTVGKATVCNVYAPVRHNGKTL GLVVRETNMATRESNGRYESESINAGKHLYEMIPRGQFPYKDSVMSQRHIARVADGFIIL TMDGVVRYAAPNAISCFRRLGLLTTMPGHYLSELGTQLLKENDPVPESLPLVLTGKAAVD SELNANRSAVSMRSLPLYDNNGRIGAILLCRDVTELRRREQELQTKDATISEIHHRVKNN LQAVSALLRLQARKTKSDEVKKELQEAQRRVQTIAMVHEGLSQTADEVVDFDKVIANLLR MAVDLATMKDQHIDINYMGKFGMMPAQDATPLSLVLTELITNSVEHGFEGRKDGHITISV GRSGPNLNVVVEDDGSGLGSEEQGGLARSSGSGLGTQIINTFVTNDFGGSVHWEPRREGG TRVVLDMKLRAAQDE >gi|316916632|gb|ADCN01000010.1| GENE 30 33804 - 34082 474 92 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0697 NR:ns ## KEGG: BLJ_0697 # Name: not_defined # Def: transcription factor WhiB # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 92 1 92 92 165 100.0 5e-40 MSSAFDWRAKAACRDKDPELFFPVGNTGAAYQQIEEAKAVCRTCKVIDACLKCALDTNQD YGVWGGLSEDERRALKRRAMRARRSQAMQMQI >gi|316916632|gb|ADCN01000010.1| GENE 31 34196 - 36022 820 608 aa, chain - ## HITS:1 COG:CAC0408_2 KEGG:ns NR:ns ## COG: CAC0408_2 COG1674 # Protein_GI_number: 15893699 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 145 357 442 664 1312 159 38.0 1e-38 MTSQQNDSKRHSVHTASAVSRAKHRLGAPPLRARLTMFAAACPMIAQALMMVILLLHGQW LFAAMIAPGIFACLVSLLLTLPSPPGPEKAHAPQQATIDVGITGDADDRAADLRHAPSQP IESLLHFARLPWRAIVGRWLEPLDLAVPIGMTGSEPLMLDLNRQGPHALVAGTTGSGKSV LLQSWCLALASMNGPEHLNFVFLDFKGGSAFRKLERLPHTVGSVCDLDLAHAVRALRALE AELTRREQLSAAVHASDIRDMVNPPPRLIVVIDEFHALKDQLPDYVNRLVRIASLGRSLG MYLIAGTQNPMGQVSADMKANMSVSICLRVRDRLQSCELLGDGRAADLSPAMPGAAFCND SEQVTAFRCATARDIDAVCRQIAFASRFVGSPPQPSLFTAPLPRHVKDRTVADHAPQRIR FGLADDGINLREATVSLTGGNIGVIGPQGRGKTTLLKTLARHASMADGLAVRVSSLHRRV WSSQWLHGGRRTPYASSDAPPPPHIVWFVDDADELFDPFRTDEQALSFTHALADESVSVV FAVSTIRPIRIPEHCNTRIVFPCGERTSDLMAGVPARLLDMMSHIDADNAGRAVLIEGTS ACLVQCAS >gi|316916632|gb|ADCN01000010.1| GENE 32 36191 - 37102 869 303 aa, chain - ## HITS:1 COG:Cgl2840 KEGG:ns NR:ns ## COG: Cgl2840 COG1316 # Protein_GI_number: 19554090 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 1 287 1 287 288 169 38.0 6e-42 MLVAALILSVFGAWQWVDSKLNRSDWLTDTPNTPASTWLILGSDERDGSTDYGGVDNISG FRTDTILVLIKPKSGPSSLVSIPRDSLMNVDNQYMKINAVALIAGKKALVSNVEQITGQK IDHVAQIKFGGLQNVVNALGGIELCYDEDVQDSYSGLNWKAGCHTADGSTALSFSRMRYA DARGDFGRNERQRQVISAIVKKASSSETLTNPSKIVAVSNAAMSALTVDEKTDPYTLLTM ALAFKSATGSNGISGSVYWSDPDYYVDGVGSSVLLDDAKNTELFNQLADGTHKAGTVGNL AEG >gi|316916632|gb|ADCN01000010.1| GENE 33 37119 - 37439 154 106 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0699 NR:ns ## KEGG: BLJ_0699 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 105 1 105 106 149 97.0 4e-35 MLRKARGRCAVTVFAVAAAGRPRWLNFVDTFAAGDEGRETGISDGLRTALRDEPEDIRAR DGGMLRGAAASGAVLRVARPVFGEKLGGVRLPLSATLALAVALAFS >gi|316916632|gb|ADCN01000010.1| GENE 34 37875 - 38174 388 99 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0701 NR:ns ## KEGG: BLJ_0701 # Name: not_defined # Def: transcription factor WhiB # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 84 19 102 117 164 100.0 8e-40 MWGVVDDSAEEPWHELWGLFRPDGDVSWQHKALCAQTDPEAFFPEKGGSTRDAKRVCAKC EVREQCLKWAIDHDERFGIWGGMSERERRRYKREHRERA >gi|316916632|gb|ADCN01000010.1| GENE 35 38218 - 41313 2402 1031 aa, chain + ## HITS:1 COG:no KEGG:BL1007 NR:ns ## KEGG: BL1007 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 1031 1 1031 1031 2002 99.0 0 MSPTGNSDIHEALADAMSSRPYTHRQDVDTGITAVITVEEDMRFLRSTLRSVLTQNVLPG VVIIADATGRTSSRITTSFEVIPSPSGPVMEVPQSKHVIIHIVSAKGARSFGDAVSRALD RADLDDAPRALWLLHDDSRPSDDSCLERLLEAWRNTPGASVLGCKQCDWEGSHLHDVGMY AGHHAVHSLVVDGEPDQEQYDGRQDVFAVSLAGALVSMSQFTRLRGINAWLTTYSESVDF CRRVCLSGGRVVVVPQAEISHRRARYEGIRTRGGEPLKDDHTVNHAMTVHRSQQRYLYTD LAMSSWFIVWLWRLLRSFGMAIAMMFGKKPYEAWVQLCLPWLALADIAGNMKSRSLVARQ SKVAASSLHVLFADSQQIKQFHDRRDAFQSQQGRVLLSPLERAHLRTRTIYRWSAAVVMA LVCFAAIAVMYWPVFRSIFSGGSLYSDVLLPTGASFTQLVQSATTPWVFGSGTGIPAPPT PWLLVLMLASLVTLGHVTAALAMILFVAAPLSALSFWALAGVFTRSDVVRVLGGLLWAST GIMFGWYAQANMPMLTVMVFLPAAFAFVFRAVGMYHTEDPLKPRTSVQAAAIAALCFIPV VAAEPQLLFALIVVFLMFLLFVRRKRAMLLLIPVPAAFAVAPTLVNAVRYADLGMWRQLF GDITVPTSSANGSPASLSLLEAAQRALGWRMGSTDYADLAVTVLFGVITLLALASLVLPF ALRTSRLMWVVIVCGGALALVSSRVAITVDADGVVAGSAQPGIAMMILGFLACVCLVAGG AVKRFQPLHASGSDPAPKKDRLHVLIVSGRVVLALILVCCIGIQCMYGIERHKDAGLGVS ENGLPMVTTDYLEAGADHRVLAVSAETRNIVNYAVMRTSRGDLIDSSPVQRARLLSGKHD AVDEQLAQACASLLSNPDEEAIAAISALGFGGIYVVPETGDSLNDMPYEQLSANIAASNG TQSLVSTDSGSYYRLTLRSSASQQVDTSWQQRAQHSVWRHAWLICLGVITALYCLVAMPR RRPSYGLEEQA >gi|316916632|gb|ADCN01000010.1| GENE 36 41310 - 42851 1309 513 aa, chain + ## HITS:1 COG:no KEGG:BLD_0759 NR:ns ## KEGG: BLD_0759 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 513 1 513 513 781 99.0 0 MSNKTSGFKRAIGIVLGVITMLVLIALFVVLVMAPIPNIWVDKVAASDNAIDQTVSPTQS ETYCPAPIGLADTGTYGDSAFQATVGNLSTQARYAAFGSVYSATVSAIGQKSSSDDVTLK DADSTDDSSVKTGAQKINQGARLINTRMLQAAAGTGTVGTIASWADDGDVRGISAASCVS TSLSQSFLLSDSTTGTTQQLIVSNLSTKPTTVDIAVWGSETAGKMALSTQSTLSVPAEGE SSMELSAAVDGQHGLFVTVFSKETPIASVVRTVTMDGLTPKGSDFALPLPTASNASVAPS ITAGDAVTAYLFAKADTSTGLSWITAKGLVPAKDATVTADKVTAIDLGEAPDGALGVMST AEDAVSFSVKATRSGDSGQADFALVNAGEPSEFSGLALPDGVKASITLANTSNARRTVTL RAYDDAGASVTSKEITLDANAAQTIEAGNLSGDHGTAVVLMLEDSSKKVSWGARFSHDSL QDKDIAGLSVIDASTLMPATVHVWARNDSSIVK >gi|316916632|gb|ADCN01000010.1| GENE 37 42954 - 43316 276 120 aa, chain - ## HITS:1 COG:no KEGG:BLD_0758 NR:ns ## KEGG: BLD_0758 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 120 1 120 120 216 100.0 3e-55 MFGTRLPRYRTRTGMFDDMVAAQVRRLGQAWPELIRPLQFAVEDVPPSDPTPWQTEPNMT SQCFPASHGIPARVVLYRMPLQTEAPTKLELQLAVRDELVARIAELYGRRPEEIDPDWGL >gi|316916632|gb|ADCN01000010.1| GENE 38 43471 - 44277 685 268 aa, chain + ## HITS:1 COG:L165449 KEGG:ns NR:ns ## COG: L165449 COG0561 # Protein_GI_number: 15672552 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Lactococcus lactis # 19 261 3 248 252 150 32.0 2e-36 MVVRSWSELDFDNVCSNAKVFGFDLDNTLASSKQPMKPAMIERFCALLDHTVVALISGGG MAVVTSQVLDVLTPNARRGNLHVMPTSGSRYYRWDGTQWALVYAHDLSEATVAAVSESLE RHARELGLWEQQVWGPRIENRGSQITFSALGQFAPVAAKQAWDRDNTKKQALVEAVKADL PHMRVRAGGYTSVDVSECGIDKAYAVRKLTQTLGIRADEMVFVGDRMTPTGNDYPAVEAG AIGVRVENPQDTVQLLDALLARFDTPAR >gi|316916632|gb|ADCN01000010.1| GENE 39 44776 - 45009 81 77 aa, chain + ## HITS:1 COG:no KEGG:BL1003 NR:ns ## KEGG: BL1003 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 77 129 205 205 131 98.0 6e-30 MQQVSSAQRARRITGHVRVKRDLIGNGDAVLLVDDIVTTGATVRQCVQAFQQAGTKVVGV LVLADAVVRRSDDDING >gi|316916632|gb|ADCN01000010.1| GENE 40 44925 - 45311 297 128 aa, chain - ## HITS:1 COG:PSLT055 KEGG:ns NR:ns ## COG: PSLT055 COG1974 # Protein_GI_number: 17233502 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Salmonella typhimurium LT2 # 14 107 50 139 140 62 39.0 2e-10 MTQQSESQAMAHEATLFVMQMAGDSMINAGIHNGDLLIVDRSLAPVPGDVVAAVMDDEIA IKRLVSRAGITILHAENPRYPDYMPSNGASPAIWGIVTDVIHPLISSSDRRTTASANTST PTTLVPAC >gi|316916632|gb|ADCN01000010.1| GENE 41 45379 - 46413 1121 344 aa, chain - ## HITS:1 COG:RSp1162 KEGG:ns NR:ns ## COG: RSp1162 COG0642 # Protein_GI_number: 17549383 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 44 321 205 482 512 155 32.0 1e-37 MKPRVKPVDLFSSLKLELSALIVIATAIAFAMCWFLLKFGWSGWIAMPLTLVVALGITYF FSRGITAPLRQMRDVAEAMADGDYTVRVDIDQDRHDEVGKLARSFNEMAGELEHADKMRR DMIANVSHELRTPVSALQAMVENMADGVTEPTPTNLESILTQTQRLSDLIAFLLDLSRME AGAASLNIEKFNFADFLDETIEPLEIADGGHAHDIRVTVPADITMEGDQDRLRQLFTNII ANALKHSADGTTVLVDAHEDENQGTIVTNVVNFGSQIAPSDRLDIFRRFVKGKTGPGTES GGTGLGLSIARWAAQLHGGTVKVVDDTRGADFEIILPKYHIAER >gi|316916632|gb|ADCN01000010.1| GENE 42 46452 - 47174 989 240 aa, chain - ## HITS:1 COG:BH3157 KEGG:ns NR:ns ## COG: BH3157 COG0745 # Protein_GI_number: 15615719 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 15 238 5 235 239 180 44.0 3e-45 MLNTTARQNTTPRTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLV IMDIMLPVMDGLEATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELI ARCKALLRRVERAKVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATL ARRPKSVLTREKLLEEVWDWVDASGTRTVDSHVKALRHKLGADTIRTVHGVGYAFEPPTA >gi|316916632|gb|ADCN01000010.1| GENE 43 47210 - 49462 2965 750 aa, chain - ## HITS:1 COG:Rv1326c KEGG:ns NR:ns ## COG: Rv1326c COG0296 # Protein_GI_number: 15608466 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Mycobacterium tuberculosis H37Rv # 30 748 28 730 731 771 53.0 0 MAKETKIKEDTVTVPVAQGDLDATSNAEFYNPHGVLGGHLGIGKHADTATIRVLRPLAKS VTILTQDGEYPMTHEYNGVFVVTVPASGTKKQPTIPDYRVRTEWESGAVLIEDDPYRYMP TVGDMDTYLFGEGRHEKLWETLGAHVLRYDDPMGGADGTPGEQVVGTAFSVWAPNAHAVR VVGNFNAWDGRRHAMRELGSSGVWEIFIPGIGAGETYKFQILNANYTWEMKADPMERQHE VPPNTASIVTESTYKWNDDAWMQHRRTTNPHDGPVSIYEVHAGSWRQGLTYRDLAKQLVD YVKQEGFTHVEFMPLAQHPFSGSWGYQVTGYYAVDSRLGSPDDFRYLVDQFHQAGIGVIM DWVPAHFPKDAFALGRFDGTPLYEDPDPLRGEHPEWGTYVFNFGRREVRNFLVANALFWL EDLHVDALRVDAVSSMLYLDYSREPGHWRPNIYGGRENLEAIDFLKEATATAYKNNPGVM VIAEESTAWPGITAPTSAGGIGFGMKWNMGWMHDTLEYLHEEPINRKWHHNEITFSMVYA YSEHYVLPISHDEVVYGKGSLYGKMPGDDWQKLAGVRSMFAYQWAHPGKKLSFMGNELAQ WGEWDHDASIDWDCLNWQEHRQVQTMVADLNAFYKAHPALWSQDFDPAGFQWLTSDDADH NTLSFLRIGTKGETLAVVVNFSGEAWSDYQVALPTGGKWTEVFTTDDAKYGGSDIHNGTF EAVEGEYHSRPFSAKITVPALGVVFLKPED >gi|316916632|gb|ADCN01000010.1| GENE 44 49661 - 50233 715 190 aa, chain + ## HITS:1 COG:MT3689 KEGG:ns NR:ns ## COG: MT3689 COG1329 # Protein_GI_number: 15843196 # Func_class: K Transcription # Function: Transcriptional regulators, similar to M. xanthus CarD # Organism: Mycobacterium tuberculosis CDC1551 # 2 150 9 155 162 151 60.0 5e-37 MVVYPRHGAAKVEAITERTVKGVTREYLQLSVLSSDGLVINVPVDNAKKVGVRDIVSASE VAKVFGILRTPIIEKEMNWSRRYKLNVEKIATGDVNKIAEVVRDLAQRDVDEHGLSAGEK RMLTKARAILTSEIALSEKIDEAEAQRLLDVNLGYEPAQPGDDKHHTAEPEDAAADTLAR VEAEKKSKKK >gi|316916632|gb|ADCN01000010.1| GENE 45 50342 - 50866 363 174 aa, chain + ## HITS:1 COG:ML0322 KEGG:ns NR:ns ## COG: ML0322 COG0245 # Protein_GI_number: 15827086 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Mycobacterium leprae # 8 174 7 158 158 137 52.0 1e-32 MGSVGVLIGQGFDAHRFAPAGSGRELWIAGLYWPVPDSCSEADAAKYEGIEGDSDGDVAA HALIDALLAAARLGDIGSLFGVGADAHGAGMHGIDMLQEVVAHLASNGYTPASASVAIIG NRPKIGTRRAEAEAALSAAVGCPVSVTATTTDHMGFTGRGEGIAAIANALVEKI >gi|316916632|gb|ADCN01000010.1| GENE 46 50918 - 51751 1191 277 aa, chain - ## HITS:1 COG:ML0335 KEGG:ns NR:ns ## COG: ML0335 COG1108 # Protein_GI_number: 15827091 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Mycobacterium leprae # 38 266 44 272 286 103 36.0 2e-22 MSTINFSYDPEWLDTLSAPFMTNAFIAGLCIALAAGVMGYFTIARRSTFAAHALAHIGLP GATGAVLLGLPVSLGMGVFALGGALVIGALGKRVSEREIATGTVLAFATGLGLFFARLSS SASQQMQSILFGSILTITTGQIIGFAVFDVLLLALLAIIYRPLLFSSLDEQVAQAKGVPI GLMNVAFMAIMAGVITIAVPAVGTLLIFALVITPAATANILAGSPFKAMVIASVLCLVSI WAGLVLSAMFPAPPSFIIVTLSTLFWAIAKAVETMRK >gi|316916632|gb|ADCN01000010.1| GENE 47 51818 - 52708 184 296 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 16 250 31 269 329 75 25 1e-12 MSETSDCIVFSDAAIKRGDHIIWQHGTFAIPTGSVTAIVGTNGTGKTTMMRAELGLLPLC HGSLTVLGKPAGEMNKRIGYVPQSYVANVDSNLTAEQSVLLGLTGTRFGIHPITKAQKAK ALEAMEFTGIADKARYRLSELSGGLRQRVAIAQALVCDPQLLMLDEPLANLDLASQRATV HVLAKLNRELNMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ VQVVTTPQGDMFVTPTPDELQDQPQDMHTAAEVAQLHHHEHGNATNGSAAISAENR >gi|316916632|gb|ADCN01000010.1| GENE 48 52881 - 54077 1330 398 aa, chain - ## HITS:1 COG:MT2119 KEGG:ns NR:ns ## COG: MT2119 COG0803 # Protein_GI_number: 15841548 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Mycobacterium tuberculosis CDC1551 # 41 291 95 348 511 115 28.0 2e-25 MGTQITRLTRLAAAGLSAVLLFATTACAATSPAETEPDNKTSVPAPTGPINVVASLNQWG SLAAELGGDDVEVTSIVNSTNVDAHDFEPKTSDVAKLSKAQIIVANGAGYDSWATKSMTK TTNIVSAASVMGAVEGDNPHLWFSKDARSSMATAITDAYIKALPSKKKAFQKRLKAWQAD EKSLETWASEFTKSHSNLTYAATEPVVYYLMADLGFKDQTPKGYTQSTASGGEPAPADLQ SFQKLIEDKGVDVLVNNTQEASDATNMITGAAGRADVPVVDVSEQMPKDADTLNAWINQL INTIIDAVDPSYGCEDATDGDTADSNANSDDSSAEGSATDDANAQDSKASTGSSTDPKYI RQCKAAASSDSSQDSAKADAANGDSGDASGNDQTDSGK >gi|316916632|gb|ADCN01000010.1| GENE 49 54181 - 55056 1197 291 aa, chain + ## HITS:1 COG:MT3464 KEGG:ns NR:ns ## COG: MT3464 COG0190 # Protein_GI_number: 15842952 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 5 289 2 276 277 297 55.0 1e-80 MSTKIDGKQIAAEIKTNLAERVNKLKAQGIQPGLGTLLVGEDPGSMKYVAGKHADCQEVG ITSVKKELPADASFDDIAAAVRELNEDPACTGFIVQLPLPKGINENAIIDMIDPAKDADG MHPYNLGELVLHVRGDISTPLPCTPRGVLELLDAYDIDLNGKEVCVLGRGITIGRTIGLM LTRNAVNATVTLCHTGTRDVADHMRRADVIVAAMGSAGFVTPDKIKDGAVLVDVGVSRVY DEEAGRYRIKGDVDKACYDKASAYTPNPGGVGPMTRAMLLANVVEMAERHA >gi|316916632|gb|ADCN01000010.1| GENE 50 55176 - 56651 2491 491 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705] # 1 491 1 491 491 964 99 0.0 MAENNTEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTE GVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIK EADGVVEGTVIEAVKGGLIVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNR NNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSEL SWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGK VTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISL SLKQANDSVDPASEDFDPAIYGMPAEYDEQGNYKYPEGFDPNANEWIAGYEKQREEWESQ YAAAHELWEEHKEFVAKELENAAESAAADGQGPKEEKPVEETSNYSSAAPTTGTLADSDQ LAALRDQLLGK >gi|316916632|gb|ADCN01000010.1| GENE 51 56826 - 57443 616 205 aa, chain + ## HITS:1 COG:MT1667_1 KEGG:ns NR:ns ## COG: MT1667_1 COG0237 # Protein_GI_number: 15841086 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Mycobacterium tuberculosis CDC1551 # 4 198 1 190 208 119 36.0 3e-27 MGTMMRIGLTGGIAAGKSTVAARLKQLGALHIDYDALAHQIVEPGGVALPQIVAEFGPDA LLADGTMNRPWIADHVFGANAAPGARERLDAIEHPLIYAEAARLEHEHPEAAIIIHDIPL LAEVIDDIPFAFDHIVTVEAPVCMRLDRMVEERGMSLEQAEARIRHQSSEEERRAIADIV IDSTHPLPEMLAQVGEIYAGWCAGR >gi|316916632|gb|ADCN01000010.1| GENE 52 57455 - 59566 2847 703 aa, chain + ## HITS:1 COG:MT1669 KEGG:ns NR:ns ## COG: MT1669 COG0556 # Protein_GI_number: 15841088 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Mycobacterium tuberculosis CDC1551 # 5 701 41 736 739 907 69.0 0 MGFNIERADKPFVVKSPYKPSGDQPQAIAELAERIENGENDVVLMGATGTGKTATTAWLI EKLQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDS NINDDVERLRHQATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKVGQEINRDDLL RQFVAMQYKRNDIAFTRGTFRVRGDTVEIIPVYEELAVRIEFFGDEIDRISTLHPLTGDE IDEENEVHIFPASHYVAGPERMERALKTIREELDERLAELRKQGKELEAQRLNMRTTYDL EMLTQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGD ASRKRTLVEHGFRLPSAMDNRPLKWPEFLQRVGQTVYLSATPGDYEMGLSDGVVEQIIRP TGLLDPKIDVRPVKGQIDDLLAEIKARVAKNERALVTTLTKKMAEDLTDYLLERGIKVEY LHSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL IQTIGRAARNVSGTVIMYADETTEAMRQAIDETDRRRAKQIAYNQEHGIDPKPLIKKISD VNDMLAKEDVDTQTLLEGGYRNAGKAGNTHLGVPVLDPNEADKRHEEILKAGLPAQDLAD LIRQLSEQMHTAAEQLQFELAARLRDEIRDLKKELRQMTEANK >gi|316916632|gb|ADCN01000010.1| GENE 53 59735 - 60721 1737 328 aa, chain + ## HITS:1 COG:Cgl1921 KEGG:ns NR:ns ## COG: Cgl1921 COG0861 # Protein_GI_number: 19553171 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Corynebacterium glutamicum # 3 324 2 330 369 271 47.0 9e-73 MAETPLAFEIITFVVLALFFIVDLFVIGRRPHVPSTKECVQHIAFFVVMALIFGGCIWFF AGSKPAIEFYSGWLTEYSLSIDNLFVFVIIMSNFAVPKQIQKYVLSIGITIALIFRGIFI LIGAALISRFTWVFFLFGAFLIYTAVKLVLGGDEDEEYHENGIIRNLRKIIKITDDYDGE KLRTTKNGVRYWTPMLIVFLTIGTTDVMFAFDSIPAIFGLTKDPFLVFTSNVFALLGLQQ LYFLLGALLDKLVYLPAGLSVVLGFIGVKLIMEALHGNTLPFINGGEGVHWVPEVPTWLS LAVIVLAIGGASVASVIKMKSMESAEKA >gi|316916632|gb|ADCN01000010.1| GENE 54 60889 - 62331 2295 480 aa, chain + ## HITS:1 COG:Cgl2036 KEGG:ns NR:ns ## COG: Cgl2036 COG0469 # Protein_GI_number: 19553286 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Corynebacterium glutamicum # 2 477 5 469 477 411 49.0 1e-114 MRKAKIVDTIGPSTEDYDNLLKLVEAGMDVARLNRSHGTPEDHLKVYNNVRKASEATGRN VAALVDLQGPKIRCGWFKKNADGEDKVQLQLGQEFVITTDDVEGDEHITSTTFKGLPGDC HPGDPILIDDGKVRLEVTKVEGNNVYTKVVVAGPVSSHKGINLPGVAVSLPALTEKDEAD LRWAIRTGADIIAMSFVRFATDIDRAHEIMDEEGRRIPIIAKIEKPQALENLEEIVKTFD GVMAARGDMAVECPLEEVPLATKRIIELARQYAKPVIVATEVLGSMVNSPVPTRAEASDC ANAILDGSDATMTSNETAVGKYPDVTVATMARISGYATDHGFDRIPELKNLDMSSTGAVS SAAVDLADKLNAKAIVAYTQTGATVHRVSRERPAAPIYGLTSNEHTYHWLALSWGTEAFL LKEDYHDKSRKDLMVYTDKVLKDAGKVADGDKIVILSSAQGDHQPGRTDSIYVHTVGACD >gi|316916632|gb|ADCN01000010.1| GENE 55 62479 - 63078 775 199 aa, chain - ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 59 190 46 176 185 79 37.0 4e-15 MSNETYRQFDPWRPSPVKEISRRQIVETHYFNVDHVSYESNQIGSFERYFVQENNGDTVA VLAVTDDGMIPLVEQYRIANHRWTLEIPAGHANNPSERPTDVAKRKLAEEAGFDATKLTQ FTRFMNTPSYSTQHTAIFFATGLTPASRQEIGPETPRSDVRMVSVDDAYEMVVNGTIVDA KTMVAILRLKSGTLDHLND >gi|316916632|gb|ADCN01000010.1| GENE 56 63424 - 64209 1237 261 aa, chain + ## HITS:1 COG:MT1662 KEGG:ns NR:ns ## COG: MT1662 COG3707 # Protein_GI_number: 15841081 # Func_class: T Signal transduction mechanisms # Function: Response regulator with putative antiterminator output domain # Organism: Mycobacterium tuberculosis CDC1551 # 43 254 16 206 208 171 48.0 2e-42 MAARKKSEEPSINIDEVLTDEELKAVANESEPAERKAKPEDGPRTVVVAEDEAVNRMDLV AMLEDNGYEVVGQAANGEEAVELTRKYRPDVVCMDVKMPRMDGITAAGIICDENIAPVVM LTAFSQTDLVKKATGAGAMAYVTKPYEESKLLPTLEVAMGRFAEINDLLDSVERSERKLK ETTDQLKETEEKLKKAEDTLEERKLVDRAKGLLMDKADFSEQGAFRWIQKTSMDQRIPKK RLAQAIIAKYGDPKPSDSGER >gi|316916632|gb|ADCN01000010.1| GENE 57 64255 - 67122 2876 955 aa, chain + ## HITS:1 COG:MT1665_2 KEGG:ns NR:ns ## COG: MT1665_2 COG0749 # Protein_GI_number: 15841084 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Mycobacterium tuberculosis CDC1551 # 440 955 84 592 592 437 50.0 1e-122 MGEASVTVPTNETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAE KPDHLGVAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFE GDDVIATLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKY KVTPVQYPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKGESL RANIDQVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTF NTGAKASNTSGAGESTNNEQNEQDSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEI ADFTVSDYGDGSQRHAICGDAVGHAWTVAAWGDERPGRATAQAIAVATATSAAIVPLPIT DTLRAQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSL KQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDERE QCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQ SPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREIN KLKQIVQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVP GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR SHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGY TETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKS RIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLAVPLDVSCGIGSDWQLAAH >gi|316916632|gb|ADCN01000010.1| GENE 58 67292 - 68212 712 306 aa, chain + ## HITS:1 COG:FN1316 KEGG:ns NR:ns ## COG: FN1316 COG0327 # Protein_GI_number: 19704651 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 5 226 4 216 258 109 27.0 6e-24 MPNLKQVIDVLETLYPLRYAEEWDEPGLIVGDLSHDVHRIVFAADPTSAIIDKAIATGAD LLITHHPLFFRSVHETSGLGFRGDIVRRLYQHGCGLWVGHTNADAAYRGVGQAAADYFGL IDQKPLVPIDDANASHPVGLGRVGRLPKPVALKDFAQRVFDEVSDHGMTSALGIQVCGDS DTFVQYVAILPGSGDSLFNEVRATGADVYVTSDLRHHPVIDAIEQARYEARMRSQGIMLG HGMAGESHVRPCFINTPHAAIESMWFNYAIDDVPAAIEQATGARPEVEWFHDTTDPWTLS ITAHRD >gi|316916632|gb|ADCN01000010.1| GENE 59 68258 - 68932 814 224 aa, chain + ## HITS:1 COG:BS_yqkG KEGG:ns NR:ns ## COG: BS_yqkG COG0494 # Protein_GI_number: 16079418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Bacillus subtilis # 32 208 7 178 185 62 25.0 7e-10 MSGGSKQEQLEHRLDHKLNASSDGIDMDVPAKVISSETVYTGRIFHVDDMRIALTDKQGK EHEIGRQVLRHAPCVVMLVHDMSTDRYLIEREYRAGSDMFAYGLPAGLMDEGEDIMDAAL RELAEETGVVPDRDTMGVDFVGDFYSSEGMTDELAHIMVLHLGPFRREQRHFDADEHVES AWIPWSDLAATRITSSNSMIAIQHEALRRLIARNSDKDKPSLFS >gi|316916632|gb|ADCN01000010.1| GENE 60 68986 - 71127 2841 713 aa, chain + ## HITS:1 COG:Cgl2054 KEGG:ns NR:ns ## COG: Cgl2054 COG1523 # Protein_GI_number: 19553304 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Corynebacterium glutamicum # 2 707 10 717 836 923 60.0 0 MQIRPGSMYPLGASYDGAGVNFALYSQVAQKVELCLFDEHDVETRIEMTERNSYVWHNYI PGLHPGQRYGYRVYGPYDPVHGLRCNPNKLLLDPYAKAIEGNIDGDESLFSYWFKSPDDN SAMNDLDSAAHTMKSAVINPYFDWGNDQHPYISYHDSVIYEAHVRGMTNLNMDVPPDIRG TYAGLAYPSVIEYLKKLGITAIELMPIHQFVNDSFLQEKGLSNYWGYNTIGFFAPHNAYS SSGERGEQVNEFKSMVKAYHRAGMEVILDVVYNHTAEGNHMGPTLSFKGIDNASYYRLVE GDQQHYFDTTGTGNSLLMRSPHALQLITDSLRYWVTEMHVDGFRFDLAATLARQFQEVDK LSAFFDIVEQDPIISRVKLIAEPWDLGSGGYQVGGFPSSWSEWNGRYRDTVRDFWRSQPS TLPEFASRLMGSSDLYQVNGRRPVASVNFITAHDGFTMNDLVSYNEKHNEANGEGNRDGE SNNRSWNCGVEGPTNIPDVNDLRQRQMRNMFATLLFSQGIPMICGGDEVARTQQGNNNAY CQDNEISWTNWHLDKGRKELLAFVSKLIHLRLDHPVLHRRRFFTGREPGDDSNMIPQVEW FDHTGSIMDMDDWQNTHAFSMMIYLNGSDIPEVDWYGNRMVDNDFILIFNAHYEPIMFTL PDERYGRKWQLVVDTHNPDGPELSYEAGFMITAQSRSFLMLMSDKKPKKPMGL >gi|316916632|gb|ADCN01000010.1| GENE 61 71265 - 71465 150 66 aa, chain + ## HITS:1 COG:no KEGG:BL0981 NR:ns ## KEGG: BL0981 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 62 1 62 277 120 98.0 2e-26 MLAGKRARLVEQLAEIQDSIDFVDAKQRFYDDVLSGATPYVSVLIPSAALAKESEEPGEL KGVERK >gi|316916632|gb|ADCN01000010.1| GENE 62 71614 - 72099 333 161 aa, chain + ## HITS:1 COG:no KEGG:BLD_0733 NR:ns ## KEGG: BLD_0733 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 161 1 161 161 328 100.0 3e-89 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR LMEMPDNGFCQSCAMPFYRPEDHGTEPDGTRSGDYCNYCYDDGVFLQDYANSDELVAACA PMMAESCHISVEQAEDCMSALLPNLKRWRRQDEIDAVAEGK >gi|316916632|gb|ADCN01000010.1| GENE 63 72103 - 72753 835 216 aa, chain + ## HITS:1 COG:lin2189 KEGG:ns NR:ns ## COG: lin2189 COG4832 # Protein_GI_number: 16801254 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 4 212 7 207 208 182 46.0 5e-46 MAFDYKKEYKDLYQPKTIPAIVMVPAMRFVAVDGVGDPNEEGGDYAKAMQLLYGISFTVK MSKKSKNPDEHIDGYFDYTVPPLEGLWSMGEGVPGVDYAHKADFHWTSMIRLPEFVTDEV FAWAKASFAAKHPEVDINRAYLFDFDEGVVAQVMHKGPYDDEPATVTILDGYARSQGYGL DFSDTRRHHEIYLSDPRRAKPENLKTIIRHPVVKVG >gi|316916632|gb|ADCN01000010.1| GENE 64 72923 - 73477 371 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 7 179 3 180 185 147 43 2e-34 MDDMNPRCGWCNLSNPVYVAYHDAEWAVPSHDDHHLFEMLVLETFQAGLSWETILNKRKR FRQAFDGFDIERIRRYDENKIAELMNDPGIIRNRRKIVATVGNANAFRDIQTSYGSFDDY IWRFTGRHVIYETGMTTSPLSDAIAVDLKTYGMRFIGTTIVYAYLQSIGVINAHEPGCFL HRER >gi|316916632|gb|ADCN01000010.1| GENE 65 73688 - 73816 71 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLGPHLLVSSIPCDIDFRFPTSNDTKIPATDCAIPWAGVGCR >gi|316916632|gb|ADCN01000010.1| GENE 66 74289 - 77360 3717 1023 aa, chain - ## HITS:1 COG:BH2723 KEGG:ns NR:ns ## COG: BH2723 COG3250 # Protein_GI_number: 15615286 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Bacillus halodurans # 13 1023 8 1014 1014 780 40.0 0 MTDITHVDRASQAWLTDPTVFEVNRTPAHSSHKWYARDPQSGQWSDLKQSLDGEWRVEVV QAADINLEEEPATAESFDDSSFERIQVPGHLQTAGLMNHKYVNVQYPWDGHENPLEPNIP ENNHVALYRRKFTVSAPVANAKQAGGSVSIVFHGMATAIYVWVNGAFVGYGEDGFTPNEF DITELLHDGENVVAVACYEYSSASWLEDQDFWRLHGLFRSVELAARPHVHIENTQIEADW DPEAGTASLDAALTVLNAADAATVRATLKDADGNTVWQTTGDAEAQTAISSGPLQGIAPW SAESPTLYELDVDVIDQAGDVIECTSQKVGFRRFRIEDGILTINGKRIVFKGADRHEFDA ERGRAITEQDMIDDVVFCKRHNINSIRTSHYPNQERWYELCDEYGIYLIDEANLEAHGSW SLPGDVLTEDTIVPGSKREWEGACVDRVNSMMRRDYNHPSVLIWSLGNESYVGDVFRAMY KHVHDIDPNRPVHYEGVTHNRDYDDVTDIETRMYSHADEIEKYLKDDPQKPYLSCEYMHA MGNSVGNMDEYTALERYPKYQGGFIWDFIDQAIYATQPDGTRSLRYGGDFGDRPSDYEFS GDGLLFADRKPSPKAQEVKQLYSNVHIDVTKDSVSVKNDNLFTATGDYVFVLSVLADGKP VWQSTRRFDVPAGETRTFDVAWPVAAYRADARELVLQVSQRLAKATDWAESGYELAFGQT VVPADATATPDTKPADGTITVGRWNAGVRGAGREVLLSRTQGGMVSYTFAGNEFVLRRPA ITTFRPLTDNDRGAGHGFERVQWLGAGRYARCVDNVLEQIDDSTLKGTYTYELATAQRTK VTVSYTAHTDGRVNLHVEYPGEQGDLPTIPAFGIEWTLPVQYTNLRFFGTGPAETYLDRK HAKLGVWSTNAFADHAPYLMPQETGNHEDVRWAEITDDHGHGMRVSRADGAAPFAVSLLP YSSFMLEEAQHQDELPKPKHMFLRVLAAQMGVGGDDSWMSPVHPQYHIPADKPISLDVDL ELI >gi|316916632|gb|ADCN01000010.1| GENE 67 77402 - 77608 188 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227546041|ref|ZP_03976090.1| ## NR: gi|227546041|ref|ZP_03976090.1| hypothetical protein HMPREF0175_0464 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 68 1 68 68 120 100.0 2e-26 MEEAGASFTEKDKQFLYKTQILFTASKSLALLAVDATPRPCNVSVQLMLSHPCDTLFISL FTNAFYFQ >gi|316916632|gb|ADCN01000010.1| GENE 68 77725 - 79212 2422 495 aa, chain + ## HITS:1 COG:STM4299 KEGG:ns NR:ns ## COG: STM4299 COG2211 # Protein_GI_number: 16767549 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 17 471 5 443 476 125 23.0 1e-28 MSNENVADGDVRRKGGLGQRIAYACGNLGQAAFYNAMSTYFVTYVTSCLFVSYSKALAAQ MIAVITGLIVVIRIAEIFIDPLLGNLVDNTTTKWGRFRPWQFIGGLVSSVLIMLIFSGMF GLVNVNTTLFIVLFVITFIVLDVFYSLRDISYWGMIPALSSDSHERSTYTALGTFTGSIG YNGITVIVIPIVSYFTWTFTGAKGQGQAGWTSFGFIVALLGLITAWTVAFGTKESTSALR AKAQKNGNPFEAFKALFQNDQLLWVALSYLLYAIANVITTGVMYYLFVFVLDEPAAFSIT GIIPLIAGFIMAPLYPILNRWIPRRYLFTGGMVSMIIGYTMLALFSSNLPVVIVALIFFY VPAQFIQMTAILSLTDSIEYGQLKNGKRNEAVTLSVRPMLDKIGGAMSNGAVGAVALAAG MTGHATAADMTASNIATFKTFAFYVPLVLIILSLVVFWFKVKIDEKMHAQIVEELEAKLA SGEIVDDEAQAVIKN >gi|316916632|gb|ADCN01000010.1| GENE 69 79382 - 80098 99 238 aa, chain - ## HITS:1 COG:no KEGG:BLD_0727 NR:ns ## KEGG: BLD_0727 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 129 236 1 108 132 216 99.0 4e-55 MHRIRAAVTAPFRPEQDDRLPCDVAQFDIRSATCQIEVEYGVVGLTHGVQNVRGHAAGGR PQVGFRLPAILRLRGKPASHESRQIAHAQIAAEEIRLPFAVRVAGDRGHAVKLPLIRFFA GIRGKHLHMRSGDGHVTELVDDAIEPVEIPMVFDGLEAISAEDGKGHGVDAGLAHQADVV IPDFLRPLVGTIVATESDAASVRGQQFWPCEVTSCTHGYLLWQAAQGHGPYRIPADTS >gi|316916632|gb|ADCN01000010.1| GENE 70 79772 - 80143 223 123 aa, chain + ## HITS:1 COG:no KEGG:Blon_2123 NR:ns ## KEGG: Blon_2123 # Name: not_defined # Def: beta-galactosidase (EC:3.2.1.23) # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 2 123 599 720 720 244 96.0 5e-64 MAAITRNTYGEGEAYFLGCDLGVSDLTRFVGGWLAAQPQDGRQPEANLRSPASGVTSDVL HTVRQSDDAIFDFYLTRGRSDVELRDIAGEPIVLFRAERGSDGGAYTVHRNGVFVTKRPN PSV >gi|316916632|gb|ADCN01000010.1| GENE 71 80620 - 80715 79 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYGLLSLCDYRYRLAEYRCSCRKKAVLDTIE >gi|316916632|gb|ADCN01000010.1| GENE 72 80861 - 82033 1396 390 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0753 NR:ns ## KEGG: BLJ_0753 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 390 1 390 390 686 99.0 0 MGRHQRAETSGLISFLICAVVGAVSMNLYMEYAPAIWQLTQRRFMVCSGIVAACGVISFI IGYARKSRSLNLKHGWFAPIRRIFEIVALSVVYASTIFLSSFALIGAANDMMGNAIFSGY ISSVCAAFAGVVGYMTFVQAEMMNAKTIASLLPFFVISGVVTAGMTTDDPYWYHNNFSQL GDRTTFAARMFNSTLILAGTCIIIVSYFAISELVTTERLQRLWHDRTNRDPNRGYEIPHF MLRISILSFLLMVAGLAFIGIGVFRYTPHNLLHNICAKGLPFVMLLLFVLLPWLAPRLSK AVMVASDLTALVCAAFWVNMMMGHNTLTNVEALAGLAFLGWFIVFSRQIAAIEADRAAAQ LLHAQAIGGGFEQPSSAPDQQIESRIAADR >gi|316916632|gb|ADCN01000010.1| GENE 73 82060 - 83397 1330 445 aa, chain + ## HITS:1 COG:Cgl0740 KEGG:ns NR:ns ## COG: Cgl0740 COG0128 # Protein_GI_number: 19551990 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Corynebacterium glutamicum # 8 443 13 429 430 333 45.0 5e-91 MTERLTNLWPAPLATQPLNATVTVPGSKSLSNRYLILAALGSKPVTLIGLLRSRDTDLMM GALEALGVRCDVDSATDTTVTVTPPVSGRFHGNVNVFCGLAGTVMRFVPGLALFADGPVN FDGDEQAYARPMKPVLDGLEQLGATVDYHGEVGRLPFTITPPATLPSAQAQVSIDSSGSS QFISGLLLISSKLPSGLHLAHTGEKTPSLPHIRMTVADVTGAGGAVEADESARTWTVEPR AMQLPSKVTVEPDLSNAAPFLGAALIAGGTVRVPHWPETTTQPGGLLPGYLEQMGAKVSF PTIDGVRYCEVTGDGTVHGLGTFDLTAAGEIAPSLAAILVFADKSTDMVGIGHLRGHETN RLEALVNEIRRVGGAAEELPDGLRIEPVPAETLHGAVMETYADHRMATFAAMLGLRIPDI EVINVATTRKTLPDFVGMWSGMLRQ >gi|316916632|gb|ADCN01000010.1| GENE 74 83477 - 83548 70 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTIYEWGLIPIGISPHSVATRDW >gi|316916632|gb|ADCN01000010.1| GENE 75 83568 - 84797 2007 409 aa, chain - ## HITS:1 COG:MT0422 KEGG:ns NR:ns ## COG: MT0422 COG0282 # Protein_GI_number: 15839795 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Mycobacterium tuberculosis CDC1551 # 1 390 1 374 385 375 47.0 1e-104 MAKTVLVINSGSSSIKYQLVDLESGEGLASGLVEKIGEPVDGHYKHEYNGEKHELEEPIH DHEQGLKRVLGFFEEYGPNLSEAGIVAVGHRVVQGGSIFPKPALVTNKTINQVKDLAVLA PLHNGPEAKGAEVMRSLLPDVPQIFVFDSSFFFQLPKAASTYALNKEIADQYHIRRYGAH GTSHEYISSVVPDVVGKPAEGLKQIVLHIGNGASASAEVSGKPVETSMGLTPLEGLMMGG RTGDIDPAVVFHLIRNAHMNVDELDALFNKRSGMMGMTGYGDLREVHRLVSEGNEDAKLA LDVYVHRIVSYIGNYTYQMGGCDVITFTAGVGENDDVVRKMVCDKLAPFGVKLDEEKNAT RSKEPRIISTPDSSVIIAVIPTNEELAIARKSAAIAEAGTDTYGNTFAK >gi|316916632|gb|ADCN01000010.1| GENE 76 84932 - 86602 2750 556 aa, chain - ## HITS:1 COG:MT0421_2 KEGG:ns NR:ns ## COG: MT0421_2 COG0280 # Protein_GI_number: 15839794 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Mycobacterium tuberculosis CDC1551 # 231 556 6 330 334 332 54.0 9e-91 MTVTRVYIASPEGANGRNVVAYGMLNALTSKYKTMVFRPAVSNHDEFTPILLAASNAGLG VALSTGLDVHKVREDKDTARGDIVGAFNDAMDVSRADAALIVGTDKSHVNDPTSYEFDAN VAADLKAGVFLAVCTIDRWPHELDETVKLSIEGMEAAGNKVLGIFVTGCEPRHAFSVKET LAKYGLPVWTLPQVPFTDESTKDLALETFRKNAPTDEVLAALDVDVTAPITPYAFQFGLL GKAKSNKKTIVLPEGEEDRIIKAADYLLEREIVNLIIVGNKDAILARGKELGLNYLERAR FQAMDDENVLKPMVAKLCELRAKKGMTEEQARKQLADASYFGTMLVVLGYADGLVSGSVN STANTVRPALQVIKTKPGQKLVSGAFLMCFKDHVAVFSDCAINLNPDAEQLSEIALQSAE TARAFGIDPKVGMLSYSTLGSGKGPDVDMVEEATKLLKEKAPYLPVVGSIQFDAAWSPTV AATKAKGNDVAGHVNVFVFPDLCAGNIGYKAVQRSSGALAIGPVLQGLNKPVNDLSRGAL VQDIINTIALTAIEAQ >gi|316916632|gb|ADCN01000010.1| GENE 77 87256 - 87954 640 232 aa, chain - ## HITS:1 COG:DR1097 KEGG:ns NR:ns ## COG: DR1097 COG0406 # Protein_GI_number: 15806117 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Deinococcus radiodurans # 8 178 23 184 232 95 40.0 9e-20 MTNHVRSVFLIRHGRTSYNAAHKLQGQVDIPLDAVGEWQVKQTAAALKRLYVDRRQEINH RFIVCSDLKRAHATAQAFADVLGGIEPVDDRRVRERSFGDWDGHAVAELAERYPEDFRSW MESRGGELKYGAEPKEAVGKRGVEALEDWSTRAGDDTDLFVFSHGAWIAQTLQTLLGISA IDPTFSTVVSLRNAHWVRLVPMDNPDGTVRWRLLDYNHGPAIADTDEWERER >gi|316916632|gb|ADCN01000010.1| GENE 78 88087 - 88500 540 137 aa, chain - ## HITS:1 COG:Cgl2300 KEGG:ns NR:ns ## COG: Cgl2300 COG0799 # Protein_GI_number: 19553550 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Corynebacterium glutamicum # 1 119 1 117 157 103 52.0 1e-22 MPALQDSINAVRVAAEAADRIKATDIVAFDVADLLGITDIMMIAGASNERQVLAVAEEIE KDLFLKCSGRQPRSREGLTEGQWVLLDYGDFVIHVMHEESREFYGLERLWRDCPAIDLEL AHPETAEHAEDAAVTTA >gi|316916632|gb|ADCN01000010.1| GENE 79 88504 - 89886 2059 460 aa, chain - ## HITS:1 COG:MT1046 KEGG:ns NR:ns ## COG: MT1046 COG1207 # Protein_GI_number: 15840446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Mycobacterium tuberculosis CDC1551 # 4 454 25 478 513 379 47.0 1e-104 MALSAAIVLAAGEGTRMRSNKPKVLHAFAGKTFLNRVMDSVAALNPDTLAVVVHFQAERV AEAARSYDEQVTIVNQDDIPGTGRAVQCAMAQLTEAGKVDGPVLIAASDMPLLDSETLHR LVEFHTASGNGATVLTTILDDPTGYGRIIRDREGNVLRIVEQKDANRSELAVQEVNTSVY VFEASVLTEAIAGLKSNNAQGEFYLTDALETAKAAGKVGAFAAPDPLTVEGVNDRVQLAA LSKTYNRRVCERWMRDGVTILDPETTWIEDDVQIGRDATILPGSFLQGHTVVGEDAIVGP YTTLIDATVDEGAVVERSRVQESHIGARTNIGPWTYLRPGNEFGEDAKAGAFVEMKKAHI GNGTKVPHLSYVGDAQLGDHTNIGGGTITANYDGVHKNRTTIGSGCHVGAGNLFVAPVEV GDNVTTGAGSVVRHAVPSDTMVYSENTQHNVEGWKPAWER >gi|316916632|gb|ADCN01000010.1| GENE 80 90168 - 91187 1138 339 aa, chain - ## HITS:1 COG:Cgl0918 KEGG:ns NR:ns ## COG: Cgl0918 COG0462 # Protein_GI_number: 19552168 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Corynebacterium glutamicum # 11 326 10 322 325 420 65.0 1e-117 MSAILEGKPDKNLILVTGRIHPKLAEDVAEQLGIDVLETTAYDFANGEMYVRYTESVRGA DVFVLQSHYKPINKAIMEQLIMIDALKRASARSITAVCPLLGYSRQDKKHRGREPISCRL VFDLLKTAGADRIMSVDLHAAQSQGFFDGPVDHLVAMPVLVDYIRDRFQGHLDNVAVVSP DAGRIRVAEQWAQRLGGGPLAFVHKTRDITRPNQAVANRVVGDVAGKDCVLVDDLIDTAG TIAGACHVLQDAGAKSVTVVATHGVLSGPAIERLKNCGAREVVLTDTVPIPEEKRWDGLT VLSIAPLLASAIRAVFEDGSVAELFDTYPEHHGQGFLFA >gi|316916632|gb|ADCN01000010.1| GENE 81 91276 - 93150 1592 624 aa, chain - ## HITS:1 COG:BS_yrhL KEGG:ns NR:ns ## COG: BS_yrhL COG1835 # Protein_GI_number: 16079768 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Bacillus subtilis # 6 600 13 615 634 235 29.0 2e-61 MKRFVGLDGIKGLALIAIVLYHCMQQRLPGGFYGVDVFFTVSGFLIAVSLIRSLAETGSL NLVRYIPKRAVRLYPALFLLIPVIVSVGWLFDHDILVSIRDQVITVLLGCYNWYAIAGGQ SYFDQMNPQVFRHLWFIGVLMQFYVIVPFIVWLMWKLRQTKLSSLIPLGLAAFSSIAMWV MYVPKGDPTRVYFGTDTHSMGLMLGVALALWVTAPQLGHARQRAVPMPRTISSSASAAAH RAPLPRIPVEHRIWNAAAPVLAFLSLIALVTMAVIGKQDAFAFRGGIILSSLLSVLLIAG TISDDSWMQSLMVFKPLASLGKYSYGIYLWHWPLWILSSALAPKIFKAVGPWPLIMTALL TAIAVMISWLMVEKPAATHSVISVVVPLRTNKKNHAARVIAVDVILVLSLVGCAQGIAHA PAKTTMQIQLEQQAAQLEHMQKTEHVLLRHAVPAPPKPKHEMPTGDQITAIGDSVMLASS QGLSEVFPGIQTDASVSRSIMVAPELIGNALSAGSLRQWVLIGLGTNSAITPDQLDQIRN MIGPDRVLVLVNAHGDRTWIPPTNQVLADYAAAHPDNVVLVDWDATANANAQVLGSDGIH PSMDSDIYAKAVKQAIEQWIASGR >gi|316916632|gb|ADCN01000010.1| GENE 82 93326 - 94807 1889 493 aa, chain - ## HITS:1 COG:SP0341 KEGG:ns NR:ns ## COG: SP0341 COG4868 # Protein_GI_number: 15900271 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pneumoniae TIGR4 # 2 493 3 494 494 577 55.0 1e-164 MRQGFDNEKYIELQAANIRKRIAQFGGKLYLEFGGKLFDDYHASRVLPGFEPDTKFRMLE SLVDDVEIVIAINANHIEKGKTRGDLGIPYDEDVLRLIDVFRSRGFLVGSVVLTQYANQP AADAYRHRLEQLGVTCRLHYPIAGYPHDIERIVSDDGYGKNEYIETTRPLVVVTAPGPGS GKLATCLSQLYHEHQRGIDAGYAKYETFPIWNLPLNHPVNIAYEAATVDLDDANIIDPFH LEAYGETTVNYNRDVEAFPVLKAMMERIMGESPYQSPTDMGVNMAGYAIVDDDACRDAAR LEIVRRYFAAAVHLKRTGTGEEQVERLRSIMNRAGVTPDLSPARAVALEKEAATGAPAGA MVLPDGHVVTGKTGDLLGAASALLMHALKAVTGVDETIPVIDDAAIEPICRLKTEHLNSV NRRLHSDETLIALSITSATSPVAARVIDGLKQLQGCDAFFSVIISSTDEALYRKLGINVC CEPKYERVSLYHR >gi|316916632|gb|ADCN01000010.1| GENE 83 95054 - 95437 484 127 aa, chain - ## HITS:1 COG:no KEGG:BLD_0714 NR:ns ## KEGG: BLD_0714 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 127 1 127 127 233 100.0 1e-60 MSEKKMLQGIASILEETLPEDWSKVVFYAEYAEGAFSIEYYVAGSGKDDFVKCFDQKGVS RASLMKNFMAINKFIEPERAALKPEKRWGSMTLILHSNGKFKVDYDYSDMTENAYARKKA WKKKYLA >gi|316916632|gb|ADCN01000010.1| GENE 84 95430 - 96686 317 418 aa, chain - ## HITS:1 COG:no KEGG:BLD_0713 NR:ns ## KEGG: BLD_0713 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 418 10 427 427 749 99.0 0 MPDTTETRLAFEEAQRTVADCADAAWRDISSGDVLTASISTVQEAADDAWKACEPTLNAA GETVRDGARDGAYLGGRFVLGVADVGENAYVGVQSNIELLAEDEEAAVKTAQTHAVDDAA NAWGDFMEADEQIREIGDYVETGGEIATEVALGAVAVTASAPAALAAGAVLVLDEMGKSL EAGAEDGEISQEDIVGEVVAGTVTAATLLAGRGLNNFLASKAAESGASSRILDDAGKAIY EGDRLLPNNEFAIDGVKCATDDLGQLYRVGDDLVPNMSYEINGYKYVTDAMGRVESAEGF LQLKTHEGRLTIKDTIQSIGKGFEELFDQRGHLIADRFNGSNGLENIVAMGGEVNQKPMQ QSSKNAPMLWLMALKCFSRLSHFMRAGHSGLARLLSRTLLTAKRRLRFFLTLQRKCNE >gi|316916632|gb|ADCN01000010.1| GENE 85 96714 - 97367 370 217 aa, chain - ## HITS:1 COG:no KEGG:BLD_0712 NR:ns ## KEGG: BLD_0712 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 217 1 217 217 436 100.0 1e-121 MLVSKAANLNESQIQELANLQRGVAAIYQNEWTEPVLCHIEPHERGLEYSPTQSKHSAKD KVSSEELRYLNSCVLNPFKLDEPREYNFCDCVHKMDIPDSMKARLIEMAGTPLSSRKPLF EWCAYRYFNIGRILDDARDLSADSLKERLCSHLLSSWKFEDDSSPESWGPIQYLFIQSMF NAHLNELRKRGTGIETTEKASALAEVSAVLSQTRPVI >gi|316916632|gb|ADCN01000010.1| GENE 86 97519 - 97974 332 151 aa, chain + ## HITS:1 COG:no KEGG:BLD_0711 NR:ns ## KEGG: BLD_0711 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 151 1 151 151 218 88.0 5e-56 MPNIGKDDHPKLWSLIFVLIIALTFCCFVMGQGLNSGTSVFLAGQGYGASLAGVLALVFS IAAALARLFVGPVIDNGKCSLVIIAGIAILIAGTALSAVVQGIPSSQSAVCCKAWALAQQ QQQPRPPQQASYRKNGSAKALDTTASDRLSP >gi|316916632|gb|ADCN01000010.1| GENE 87 97971 - 98843 410 290 aa, chain + ## HITS:1 COG:no KEGG:BLD_0710 NR:ns ## KEGG: BLD_0710 # Name: not_defined # Def: putative permease # Organism: B.longum_DJO10A # Pathway: not_defined # 1 290 1 290 290 552 99.0 1e-156 MSIGPAFALYLVGTDPSTNLYVGLALVGFAGLVIALNARYESKWQTLPSSSAYRIKMETR LELDSKDGQAPSSTTVTTSETINSEKYPEGDQVSKRTLRDSFNIFEPRALSGAIPQMIMC PTFGFGVFFAGLYGTTLGYTHAGLFYTISAVSMIIIRMISKHFMDTVPAIKTMTGAVACG ILCCLMLLAAPYGEPVFLASGIFYGLATGISLPLNQSVAVKNTPPERWGAANALFLLAND IGIGFASVIWGVINDSFGFQTSIVCVIVCLIASYASAWIVYPARDKRWRH >gi|316916632|gb|ADCN01000010.1| GENE 88 98963 - 99451 458 162 aa, chain - ## HITS:1 COG:SPy0131 KEGG:ns NR:ns ## COG: SPy0131 COG3436 # Protein_GI_number: 15674346 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Streptococcus pyogenes M1 GAS # 5 125 331 450 450 107 45.0 1e-23 MGAGQLPLASPKLALHRALQYAVEFWPYVMNVLEDGHLELSNNVAEQAQRIFVVGRKNWL FSDSPRGARASAAIYSVTTTAKANGLNPRLYVEWLLTEMPNAGELTDEVVDSFLPWSDRV PESCKLDPAAAEKAKEMPDDFIINIDPDAFDDEMANNAEEGL >gi|316916632|gb|ADCN01000010.1| GENE 89 100107 - 100544 153 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 89 145 1 57 57 115 100.0 1e-24 ASSRSAANSRLSRATARVTVDRETSAPCSSLNRSQILVAVCRCLRQFARSSASHCSITGR YGSITDARGFLTDGTADRSSFARYLRTVGSLTCVFRAIDATDSPFRRKRRIDCTWGMLII ILSGPFWRRYKHHPVKTIPWSACSA Prediction of potential genes in microbial genomes Time: Fri May 13 12:39:37 2011 Seq name: gi|316916629|gb|ADCN01000011.1| Bifidobacterium sp. 12_1_47BFAA cont1.11, whole genome shotgun sequence Length of sequence - 2704 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 414 186 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - TRNA 619 - 695 75.8 # Met CAT 0 0 + Prom 676 - 735 2.7 2 2 Tu 1 . + CDS 911 - 1945 1519 ## COG1897 Homoserine trans-succinylase + Term 1980 - 2012 3.0 3 3 Tu 1 . + CDS 2264 - 2702 362 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316916629|gb|ADCN01000011.1| GENE 1 1 - 414 186 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 118 202 312 317 76 42 3e-14 RFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYFA DPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEAF ADELLELQDQQGCCTSK >gi|316916629|gb|ADCN01000011.1| GENE 2 911 - 1945 1519 344 aa, chain + ## HITS:1 COG:BH2280 KEGG:ns NR:ns ## COG: BH2280 COG1897 # Protein_GI_number: 15614843 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Bacillus halodurans # 1 302 1 302 303 317 49.0 3e-86 MPIKIPSGLPARDILDSERIFALEKPEAERQRVRPLKLVILNLMPKKIETETQLLRLISK SPLQVEIDFMKTSTHEATHVSADHLVKFYENLDAFKDNYYDGFVVTGAPVEHMPFEDVDY WDEFKTILDWASTHVFSTMYLCWGAMGALYYRYGIHKVDYPEKIFGVFPQYLQDEYCFLT NGFDEIDLQPHSRLAGVNENEVRANHDLQILTWGPQSGPGLIATRDFSEVFALGHWEYGK YTLAEEYERDMAKGMTNVPFPKNYFPHDDPKLEPLFAWRAHANLLWRNWLNWVYQTTPYD LTEVPQLRAEKKLGTDRSIRHEPGGPRQDDFKPFVHDGYGVIQG >gi|316916629|gb|ADCN01000011.1| GENE 3 2264 - 2702 362 146 aa, chain + ## HITS:1 COG:Cgl0182 KEGG:ns NR:ns ## COG: Cgl0182 COG2826 # Protein_GI_number: 19551432 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Corynebacterium glutamicum # 4 145 203 320 536 61 32.0 5e-10 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGRLKAQCAGDPSMRISHECLYQW Prediction of potential genes in microbial genomes Time: Fri May 13 12:40:26 2011 Seq name: gi|316916494|gb|ADCN01000012.1| Bifidobacterium sp. 12_1_47BFAA cont1.12, whole genome shotgun sequence Length of sequence - 155026 bp Number of predicted genes - 143, with homology - 134 Number of transcription units - 77, operones - 35 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 406 417 ## COG2826 Transposase and inactivated derivatives, IS30 family + Prom 560 - 619 2.7 2 2 Op 1 40/0.000 + CDS 642 - 1454 1207 ## COG0356 F0F1-type ATP synthase, subunit a 3 2 Op 2 37/0.000 + CDS 1558 - 1785 510 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 4 2 Op 3 38/0.000 + CDS 1842 - 2360 840 ## COG0711 F0F1-type ATP synthase, subunit b 5 2 Op 4 41/0.000 + CDS 2395 - 3231 1360 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 6 2 Op 5 42/0.000 + CDS 3307 - 4938 2514 ## COG0056 F0F1-type ATP synthase, alpha subunit 7 2 Op 6 42/0.000 + CDS 4942 - 5865 1167 ## COG0224 F0F1-type ATP synthase, gamma subunit 8 2 Op 7 42/0.000 + CDS 5874 - 7346 2198 ## COG0055 F0F1-type ATP synthase, beta subunit 9 2 Op 8 . + CDS 7346 - 7639 317 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 7659 - 7696 9.4 10 2 Op 9 . + CDS 7697 - 8497 884 ## COG1637 Predicted nuclease of the RecB family + Term 8499 - 8552 21.0 - Term 8491 - 8534 15.4 11 3 Tu 1 . - CDS 8543 - 9532 1347 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 - Prom 9587 - 9646 2.6 12 4 Op 1 . + CDS 9613 - 10692 845 ## BLD_1119 hypothetical protein 13 4 Op 2 . + CDS 10692 - 11699 1234 ## BLD_1118 hypothetical protein 14 5 Tu 1 . + CDS 11946 - 12920 1407 ## COG3118 Thioredoxin domain-containing protein 15 6 Tu 1 . - CDS 13003 - 13617 637 ## COG2954 Uncharacterized protein conserved in bacteria - Prom 13732 - 13791 78.0 + TRNA 13715 - 13790 83.0 # Arg CCG 0 0 + Prom 13716 - 13775 78.5 16 7 Op 1 . + CDS 13862 - 13999 74 ## 17 7 Op 2 . + CDS 14187 - 14576 709 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 14590 - 14647 24.0 18 8 Op 1 . + CDS 14759 - 15676 856 ## BLD_1114 1-acyl-sn-glycerol-3-phosphate acyltransferase 19 8 Op 2 4/0.000 + CDS 15770 - 16771 1167 ## COG0240 Glycerol-3-phosphate dehydrogenase + Term 16784 - 16814 2.9 20 8 Op 3 . + CDS 16958 - 18145 1475 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 21 9 Op 1 3/0.000 + CDS 18411 - 19136 1322 ## COG1840 ABC-type Fe3+ transport system, periplasmic component 22 9 Op 2 5/0.000 + CDS 19148 - 20098 1254 ## COG4132 ABC-type uncharacterized transport system, permease component 23 9 Op 3 8/0.000 + CDS 20095 - 20949 1253 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 24 9 Op 4 . + CDS 20954 - 22231 2052 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components + Term 22386 - 22435 8.8 + Prom 22423 - 22482 1.8 25 10 Tu 1 . + CDS 22534 - 23568 1017 ## Blon_0325 abortive infection protein 26 11 Op 1 . - CDS 23607 - 24404 913 ## COG0668 Small-conductance mechanosensitive channel - Term 24448 - 24484 4.8 27 11 Op 2 . - CDS 24485 - 25918 1703 ## COG1027 Aspartate ammonia-lyase 28 12 Op 1 . - CDS 26036 - 26767 881 ## BLD_1104 AcrR-type transcriptional regulator 29 12 Op 2 . - CDS 26858 - 28360 1386 ## BLJ_0296 hypothetical protein - Term 28453 - 28501 1.1 30 13 Op 1 . - CDS 28585 - 29085 433 ## COG0350 Methylated DNA-protein cysteine methyltransferase 31 13 Op 2 . - CDS 29144 - 29329 66 ## BLJ_0299 hypothetical protein + TRNA 29330 - 29402 76.1 # Gly GCC 0 0 + TRNA 29449 - 29520 78.3 # Val GAC 0 0 + TRNA 29569 - 29644 81.3 # Val CAC 0 0 + Prom 29874 - 29933 1.5 32 14 Tu 1 . + CDS 29983 - 30207 243 ## Blon_0332 hypothetical protein + Term 30247 - 30281 -0.8 33 15 Tu 1 . - CDS 30621 - 30854 171 ## BLJ_0307 vacuole effluxer Atg22 like protein - Prom 31087 - 31146 2.7 34 16 Op 1 . + CDS 30881 - 31234 251 ## BLJ_0305 flagellar FliF M-ring protein 35 16 Op 2 . + CDS 31231 - 31416 214 ## BLD_1097 hypothetical protein - Term 31201 - 31228 -0.8 36 17 Tu 1 . - CDS 31475 - 31759 89 ## gi|291457120|ref|ZP_06596510.1| hypothetical protein BIFBRE_04351 37 18 Tu 1 . + CDS 31795 - 32883 918 ## COG1396 Predicted transcriptional regulators - Term 33003 - 33045 10.1 38 19 Op 1 3/0.000 - CDS 33081 - 34124 683 ## COG0798 Arsenite efflux pump ACR3 and related permeases 39 19 Op 2 . - CDS 34121 - 34531 166 ## COG0394 Protein-tyrosine-phosphatase 40 19 Op 3 5/0.000 - CDS 34534 - 34911 333 ## COG0526 Thiol-disulfide isomerase and thioredoxins 41 19 Op 4 . - CDS 34957 - 35970 792 ## COG0701 Predicted permeases - Prom 36047 - 36106 3.0 42 20 Tu 1 . + CDS 36264 - 36398 62 ## - Term 36494 - 36537 9.2 43 21 Tu 1 . - CDS 36568 - 37845 1697 ## COG2270 Permeases of the major facilitator superfamily - Term 37963 - 37995 6.3 44 22 Tu 1 . - CDS 38070 - 39086 1365 ## COG0524 Sugar kinases, ribokinase family - Prom 39144 - 39203 3.1 + Prom 39318 - 39377 2.2 45 23 Tu 1 . + CDS 39457 - 39651 335 ## PROTEIN SUPPORTED gi|23464931|ref|NP_695534.1| 50S ribosomal protein L28 + Term 39671 - 39717 11.5 46 24 Tu 1 . - CDS 39693 - 39758 63 ## 47 25 Tu 1 1/0.056 + CDS 39751 - 42594 2670 ## COG1200 RecG-like helicase + Term 42729 - 42783 14.2 48 26 Tu 1 . + CDS 42821 - 43432 217 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 - Term 43259 - 43314 7.0 49 27 Tu 1 . - CDS 43456 - 44271 959 ## COG0336 tRNA-(guanine-N1)-methyltransferase - Prom 44414 - 44473 2.5 50 28 Op 1 . + CDS 44345 - 45991 1591 ## COG0826 Collagenase and related proteases 51 28 Op 2 . + CDS 46071 - 47051 1281 ## COG1496 Uncharacterized conserved protein 52 28 Op 3 . + CDS 47131 - 48006 280 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 53 28 Op 4 . + CDS 48016 - 48693 741 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 54 28 Op 5 . + CDS 48841 - 50445 2019 ## BLJ_0334 hypothetical protein + Term 50475 - 50527 13.2 55 29 Tu 1 . + CDS 50560 - 51903 2063 ## COG3579 Aminopeptidase C + Term 51949 - 51985 1.3 + Prom 52082 - 52141 2.2 56 30 Tu 1 1/0.056 + CDS 52195 - 53328 1249 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase + Term 53346 - 53385 8.0 57 31 Tu 1 . + CDS 53457 - 54689 1051 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 58 32 Op 1 . + CDS 54811 - 55524 1096 ## COG0775 Nucleoside phosphorylase 59 32 Op 2 . + CDS 55576 - 55644 120 ## + Term 55663 - 55694 4.1 + Prom 55663 - 55722 2.3 60 33 Op 1 40/0.000 + CDS 55775 - 57106 1446 ## COG0642 Signal transduction histidine kinase 61 33 Op 2 . + CDS 57271 - 58008 1042 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 58011 - 58048 5.3 + Prom 58144 - 58203 1.5 62 34 Op 1 39/0.000 + CDS 58258 - 59391 2201 ## COG0226 ABC-type phosphate transport system, periplasmic component 63 34 Op 2 38/0.000 + CDS 59602 - 60555 1368 ## COG0573 ABC-type phosphate transport system, permease component 64 34 Op 3 41/0.000 + CDS 60555 - 61553 1402 ## COG0581 ABC-type phosphate transport system, permease component 65 34 Op 4 . + CDS 61606 - 62385 263 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 62435 - 62464 3.5 + Prom 62436 - 62495 1.6 66 35 Op 1 . + CDS 62682 - 63260 798 ## COG1704 Uncharacterized conserved protein + Term 63270 - 63311 6.5 67 35 Op 2 . + CDS 63330 - 65594 2648 ## BL0310 hypothetical protein 68 35 Op 3 . + CDS 65604 - 65861 274 ## BLJ_0351 hypothetical protein 69 35 Op 4 . + CDS 65897 - 67642 1563 ## BLD_1065 hypothetical membrane protein + Term 67684 - 67721 8.5 - Term 67670 - 67709 5.1 70 36 Tu 1 . - CDS 67882 - 68154 212 ## + Prom 68217 - 68276 2.3 71 37 Op 1 . + CDS 68335 - 69198 1425 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 69215 - 69277 12.6 72 37 Op 2 . + CDS 69290 - 70345 1006 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 70349 - 70399 7.0 + Prom 70476 - 70535 2.3 73 38 Op 1 6/0.000 + CDS 70599 - 71585 428 ## COG1609 Transcriptional regulators + Prom 71632 - 71691 4.5 74 38 Op 2 35/0.000 + CDS 71736 - 73001 1952 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 73040 - 73088 8.2 75 38 Op 3 38/0.000 + CDS 73116 - 74048 1065 ## COG1175 ABC-type sugar transport systems, permease components 76 38 Op 4 . + CDS 74045 - 74878 1015 ## COG0395 ABC-type sugar transport system, permease component 77 38 Op 5 . + CDS 74886 - 77024 1810 ## BLD_1057 hypothetical protein + Term 77047 - 77083 7.1 78 39 Op 1 . - CDS 77392 - 78609 332 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes 79 39 Op 2 . - CDS 78617 - 78910 280 ## BLD_1055 Xre-type transcriptional regulator - Prom 78962 - 79021 3.4 - Term 79036 - 79079 6.7 80 40 Op 1 12/0.000 - CDS 79104 - 79718 949 ## COG0806 RimM protein, required for 16S rRNA processing 81 40 Op 2 19/0.000 - CDS 79741 - 79974 338 ## COG1837 Predicted RNA-binding protein (contains KH domain) 82 40 Op 3 . - CDS 79995 - 80456 761 ## PROTEIN SUPPORTED gi|23464906|ref|NP_695509.1| 30S ribosomal protein S16 - Prom 80578 - 80637 3.6 83 41 Op 1 . - CDS 80689 - 81798 905 ## BL0304 hypothetical protein - Term 81826 - 81865 11.1 84 41 Op 2 . - CDS 81875 - 83527 2506 ## COG0541 Signal recognition particle GTPase + Prom 83686 - 83745 2.2 85 42 Tu 1 . + CDS 83832 - 84740 1220 ## BL0302 hypothetical protein 86 43 Op 1 . - CDS 84759 - 86408 2137 ## COG0215 Cysteinyl-tRNA synthetase 87 43 Op 2 . - CDS 86474 - 86572 82 ## + Prom 86335 - 86394 2.1 88 44 Op 1 . + CDS 86627 - 87355 790 ## COG0518 GMP synthase - Glutamine amidotransferase domain 89 44 Op 2 . + CDS 87403 - 89679 2856 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 89596 - 89636 2.3 90 45 Op 1 . - CDS 89732 - 90151 298 ## COG1487 Predicted nucleic acid-binding protein, contains PIN domain 91 45 Op 2 . - CDS 90161 - 90439 392 ## BLJ_0372 hypothetical protein - Term 90519 - 90557 4.6 92 46 Op 1 32/0.000 - CDS 90595 - 91149 1071 ## COG0440 Acetolactate synthase, small (regulatory) subunit 93 46 Op 2 . - CDS 91166 - 93133 2836 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 94 47 Tu 1 . - CDS 93294 - 94022 998 ## COG0571 dsRNA-specific ribonuclease - Term 94107 - 94142 5.6 95 48 Op 1 . - CDS 94170 - 94364 357 ## PROTEIN SUPPORTED gi|23335838|ref|ZP_00121070.1| COG0333: Ribosomal protein L32 96 48 Op 2 . - CDS 94453 - 95082 789 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein 97 48 Op 3 . - CDS 95171 - 96061 964 ## BLD_1038 hypothetical protein 98 48 Op 4 . - CDS 96069 - 96569 338 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 99 49 Tu 1 . + CDS 96843 - 97136 362 ## BLJ_0380 hypothetical protein + Term 97217 - 97259 2.6 100 50 Tu 1 . - CDS 97178 - 98188 1654 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 101 51 Tu 1 . - CDS 98299 - 98400 70 ## - Prom 98545 - 98604 2.9 + Prom 98152 - 98211 3.4 102 52 Tu 1 . + CDS 98362 - 98790 596 ## COG0789 Predicted transcriptional regulators 103 53 Tu 1 . - CDS 98890 - 99516 692 ## BLD_1033 hypothetical protein - Prom 99709 - 99768 3.1 + Prom 99655 - 99714 2.0 104 54 Tu 1 . + CDS 99747 - 101069 2024 ## COG1488 Nicotinic acid phosphoribosyltransferase 105 55 Op 1 8/0.000 + CDS 101352 - 102128 954 ## COG0689 RNase PH + Term 102133 - 102164 4.1 106 55 Op 2 . + CDS 102172 - 102930 352 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein + Term 103060 - 103094 5.7 - TRNA 103098 - 103170 53.4 # Thr CGT 0 0 107 56 Op 1 3/0.000 + CDS 103377 - 104645 1170 ## COG2348 Uncharacterized protein involved in methicillin resistance 108 56 Op 2 3/0.000 + CDS 104719 - 106029 1631 ## COG2348 Uncharacterized protein involved in methicillin resistance 109 56 Op 3 . + CDS 106079 - 107359 1227 ## COG2348 Uncharacterized protein involved in methicillin resistance 110 57 Tu 1 . - CDS 107442 - 108443 1390 ## COG0679 Predicted permeases - TRNA 108633 - 108716 67.1 # Leu TAG 0 0 - TRNA 108804 - 108876 79.7 # Thr CGT 0 0 + Prom 109040 - 109099 3.1 111 58 Tu 1 . + CDS 109165 - 110862 3037 ## COG0166 Glucose-6-phosphate isomerase + Term 110913 - 110959 2.2 112 59 Op 1 6/0.000 - CDS 111170 - 112594 1627 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 113 59 Op 2 . - CDS 112613 - 114403 1977 ## COG4986 ABC-type anion transport system, duplicated permease component - Prom 114494 - 114553 2.1 114 60 Op 1 5/0.000 + CDS 115147 - 115512 605 ## PROTEIN SUPPORTED gi|189439887|ref|YP_001954968.1| 50S ribosomal protein L19 + Term 115574 - 115615 12.2 115 60 Op 2 4/0.000 + CDS 115679 - 116518 822 ## COG0681 Signal peptidase I 116 60 Op 3 . + CDS 116638 - 117477 812 ## COG0164 Ribonuclease HII 117 61 Op 1 . + CDS 117604 - 118719 1098 ## COG1609 Transcriptional regulators + Term 118747 - 118792 1.8 118 61 Op 2 3/0.000 + CDS 118799 - 120520 2535 ## COG1070 Sugar (pentulose and hexulose) kinases 119 61 Op 3 5/0.000 + CDS 120605 - 121297 1126 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 120 61 Op 4 . + CDS 121529 - 123046 2296 ## COG2160 L-arabinose isomerase + Term 123193 - 123232 10.5 - Term 123180 - 123221 7.1 121 62 Tu 1 . - CDS 123230 - 123946 350 ## COG2071 Predicted glutamine amidotransferases - Prom 124017 - 124076 1.9 122 63 Tu 1 . + CDS 124220 - 125794 1165 ## BLJ_0404 hypothetical protein + Term 125884 - 125916 1.6 + Prom 125961 - 126020 4.6 123 64 Op 1 10/0.000 + CDS 126141 - 127310 1119 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 124 64 Op 2 36/0.000 + CDS 127316 - 128530 1035 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 125 64 Op 3 . + CDS 128543 - 129178 225 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Term 129251 - 129316 20.4 126 65 Tu 1 . - CDS 129360 - 131183 2674 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 127 66 Tu 1 . + CDS 131288 - 131578 279 ## COG0477 Permeases of the major facilitator superfamily + Term 131585 - 131620 7.4 128 67 Tu 1 . + CDS 132128 - 136189 4405 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components + Term 136255 - 136304 -0.2 129 68 Tu 1 . - CDS 136463 - 136732 192 ## COG0477 Permeases of the major facilitator superfamily 130 69 Op 1 35/0.000 + CDS 137570 - 138919 2354 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 139016 - 139053 6.9 131 69 Op 2 38/0.000 + CDS 139138 - 140100 1398 ## COG1175 ABC-type sugar transport systems, permease components 132 69 Op 3 . + CDS 140118 - 141110 1530 ## COG0395 ABC-type sugar transport system, permease component + Term 141201 - 141240 0.3 - Term 140991 - 141030 -0.4 133 70 Tu 1 . - CDS 141078 - 141308 85 ## 134 71 Op 1 1/0.056 + CDS 141297 - 143429 2682 ## COG1874 Beta-galactosidase 135 71 Op 2 1/0.056 + CDS 143473 - 144528 1280 ## COG1609 Transcriptional regulators + Prom 144565 - 144624 2.4 136 72 Op 1 . + CDS 144724 - 147417 3182 ## COG3867 Arabinogalactan endo-1,4-beta-galactosidase 137 72 Op 2 . + CDS 147427 - 147702 68 ## + Term 147706 - 147745 2.5 138 73 Op 1 . + CDS 148053 - 148922 1198 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 139 73 Op 2 . + CDS 148926 - 149669 861 ## BLJ_0421 hypothetical protein 140 74 Tu 1 . - CDS 149673 - 151043 1248 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 151072 - 151131 6.5 + Prom 151036 - 151095 2.7 141 75 Tu 1 . + CDS 151294 - 152661 1605 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 152699 - 152745 11.1 - Term 152687 - 152733 7.3 142 76 Tu 1 . - CDS 152761 - 154365 1662 ## COG0477 Permeases of the major facilitator superfamily - Term 154486 - 154515 -0.8 143 77 Tu 1 . - CDS 154673 - 155026 472 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316916494|gb|ADCN01000012.1| GENE 1 2 - 406 417 134 aa, chain + ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 3 117 266 380 383 94 40.0 4e-20 DDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGMLTYFADPYSSWQR GSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLLGYKTPNEVWDEEMAKLQ SKQADPKPAVALTS >gi|316916494|gb|ADCN01000012.1| GENE 2 642 - 1454 1207 270 aa, chain + ## HITS:1 COG:Cgl1179 KEGG:ns NR:ns ## COG: Cgl1179 COG0356 # Protein_GI_number: 19552429 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Corynebacterium glutamicum # 37 267 38 265 270 140 33.0 4e-33 MVGSLSAGLLLADEAGAHLPSVDDFLPPEILFQGTPFAINRIILIRIVATIVLLVVLGVT AKRAKLIPGRWQGVVEYGLDFVRDKVVYDVMGEARGKRYVPMITTLFFTIFIFNLCGIIP GMNMAANATVVMPLVFAVWTLIQYWIAAIRSQGLGHYLRHELFTPGVPWPVYFLLAPINL LELLIIRPASLTIRLFANMVSGHLMVATCLAFAQFWMVDAVNKLQGIPVGALWFAGGFAM TCFEAFVAFLQAYVFAILSTVYINLSFPEE >gi|316916494|gb|ADCN01000012.1| GENE 3 1558 - 1785 510 75 aa, chain + ## HITS:1 COG:Cgl1180 KEGG:ns NR:ns ## COG: Cgl1180 COG0636 # Protein_GI_number: 19552430 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Corynebacterium glutamicum # 13 74 18 79 80 62 61.0 2e-10 MDIITLAEVAGNLSVIGYGIGTLGPGIGLGILFGKAMESTARQPEMSGKIQTIMFIGLAL VEVLALIGFVAALII >gi|316916494|gb|ADCN01000012.1| GENE 4 1842 - 2360 840 172 aa, chain + ## HITS:1 COG:Cgl1181 KEGG:ns NR:ns ## COG: Cgl1181 COG0711 # Protein_GI_number: 19552431 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Corynebacterium glutamicum # 6 168 18 180 188 106 38.0 2e-23 MTQAASGIDLFIPEVYDIVWSLIILVIVAVFFYKFFMPKFNAIFDERAAKIQGNIAKAEQ ARKDADEAKAKYEAQLSTARVDAAKIRDDARAEASHIIADARSRAESDAAQITASAQRSI ESQHQQAIVSLKGEVGALATALAGKILGAKLEDNDVQSSMIDSMIDDLGAKK >gi|316916494|gb|ADCN01000012.1| GENE 5 2395 - 3231 1360 278 aa, chain + ## HITS:1 COG:Cgl1182 KEGG:ns NR:ns ## COG: Cgl1182 COG0712 # Protein_GI_number: 19552432 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Corynebacterium glutamicum # 23 267 24 266 271 83 28.0 6e-16 MRGEASRIADRESRDSLAPKLRDTREDAWRIGNELFTITKVLDDSIQLERALTDPSRPVA DKVAVLKELLGDNAHPMTMEIMTDLVSRRWSRARDVANAVEDFGVDAMMYYADATDATLQ VSIELSELHSALLNLPVVRAKLYDYQATSEARVKLFREVFSGKTLNKVTMRLAEHATCNL RRRRYLETIQWLINKFSRHMGESMVTVTTATPLKKEQIKRLVEVYSAKVGRQVHINSVVD PTVLGGMRIQVGDEVTDNTVVAQLQNLHRKVQTEATPA >gi|316916494|gb|ADCN01000012.1| GENE 6 3307 - 4938 2514 543 aa, chain + ## HITS:1 COG:MT1348 KEGG:ns NR:ns ## COG: MT1348 COG0056 # Protein_GI_number: 15840759 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 538 1 533 549 692 65.0 0 MAELTIDPASIRKALDDFVSSYKPSDTPTQEVGYVATAGDGIAHVTGLPGCMANELLTFE DGTLGLAFNLDAREIGVVILGDFAGIEEGQEVRRTGEVLSVPVGDGYLGRVVDPLGKPLD GLGEIQGIEGRRILEAQAPDVMHRHPVDEPLSTGLKAIDAMTPIGRGQRQLIIGDRQTGK TAIAIDTIINQKANWESGDPKKQVRCIYVAIGQKGSTIASVKQSLEDAGAMEYTTIVASP AADSAGFKYIAPYTGSAIGQHWMYNGKHVLIVFDDLSKQAEAYRSISLLLRRPPGREAYP GDVFYLHSRLLERCAKVSDDLGGGSMTGLPIVETKANDVSAYIPTNVISITDGQIFLQSD LFNANQRPAVDVGISVSRVGGAAQTKALKKVSGTLKISLAQYRSLESFAMFASDLDAASK AQLTRGAHLTELLKQPQFHPYSPEQEVVSVWTGTHGKLDDLDLKDVLPFEQGLLDYIDHN TDILKTIRETEEFTADTEAALDKAVDEFRSTFVSSAGKPLVEKKPDVDKAAPVDQEKIVA GEK >gi|316916494|gb|ADCN01000012.1| GENE 7 4942 - 5865 1167 307 aa, chain + ## HITS:1 COG:MT1349 KEGG:ns NR:ns ## COG: MT1349 COG0224 # Protein_GI_number: 15840760 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Mycobacterium tuberculosis CDC1551 # 7 304 8 303 305 212 41.0 7e-55 MGSQLALKSRIRSTESLAKIFNAQEMIASSHIAKARDVALNAKPYTDAIFDAVQALVAHT HITHPIAVKDEKNPRVAVLALTSDRGMAGPYTSSIIRETESLLSRLDAAGKQPELFVYGR RGSTYYKYRNRDIAATWEGDTDQPGVEIAETISNTLMDAYMKPAEKGGVSELYIVYTEFI NMVVQKVRVLRMLPVEIVKNETKVPDPDEEAPATADVAPLYTFEPSLEKVLDAILPKYIQ SRIHECLLTAAASETASRQNAMHTATDNARNLIDDLTRKLNASRQASITQELTEIIGSAD ALTKKEE >gi|316916494|gb|ADCN01000012.1| GENE 8 5874 - 7346 2198 490 aa, chain + ## HITS:1 COG:Cgl1185 KEGG:ns NR:ns ## COG: Cgl1185 COG0055 # Protein_GI_number: 19552435 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Corynebacterium glutamicum # 3 484 6 480 483 665 69.0 0 MADNQTTAAEPTNGRVTRVQGSVIDVEFPVGHLPDIYNALKVTIVNTSAKEEGEAKETEI TLEVEQHLGDSTVRCVALKPTDGLVRGASVSDTGAPISVPVGDVTKGHVFDVSGNILNKK PDETITVSERWPIHRNPPAFDQLESKTQMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKT VLIQEMIQRVAQNHGGVSVFAGVGERTREGNDLIGEMAEAGVLEKTALVFGQMDEQPGTR LRVPLTALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEM GSLQERITSTRGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSRDIASKGIYPAVD PLSSTSRILDPRYVGQAHYDCANRVKAILQRNKELQDIIALIGIDELGEEDKTTVNRARK IEQFLGQNFYVAEKFTGRPGSYVPADETIEAFTRICDGVYDDVPEQAFSGIGGIDDLEEK WHNMQKELGA >gi|316916494|gb|ADCN01000012.1| GENE 9 7346 - 7639 317 97 aa, chain + ## HITS:1 COG:Cgl1186 KEGG:ns NR:ns ## COG: Cgl1186 COG0355 # Protein_GI_number: 19552436 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Corynebacterium glutamicum # 8 82 4 79 124 57 36.0 5e-09 MAAEKTTMKVNIVAADHPVWHGEATSVTIPASEGGMGILPDHEPVLTVIKQGTLTVVEPD GDRHMFEVTDGFISFDSNKLTVAVERGHDVQYSGTAE >gi|316916494|gb|ADCN01000012.1| GENE 10 7697 - 8497 884 266 aa, chain + ## HITS:1 COG:Cgl1188 KEGG:ns NR:ns ## COG: Cgl1188 COG1637 # Protein_GI_number: 19552438 # Func_class: L Replication, recombination and repair # Function: Predicted nuclease of the RecB family # Organism: Corynebacterium glutamicum # 11 266 1 230 230 261 51.0 1e-69 MPCVALQWWPMRVIVADCSAEYSGRLNASLPLAKRVLLIKADSSLLIFSELGSYKPLNWM TAPCTIREIDPAAKSAQHSRESVAGGAVDGDSATHSPESVAAGEPEKVLRVSADKGSDIL EVTLQHIYSDQTYDLGEDPGLIKDGVEDHLQRYLAEQIERIGKGAKLVRREYPTAIGPVD IMAVNAEGEHVAVEIKRHGGIDGVEQLTRYCELLNRDPLLAPVHGIFAAQTITPQAQVLA KDRGFTCLILDYDDMKGTEDDSLRLF >gi|316916494|gb|ADCN01000012.1| GENE 11 8543 - 9532 1347 329 aa, chain - ## HITS:1 COG:slr1761 KEGG:ns NR:ns ## COG: slr1761 COG0545 # Protein_GI_number: 16329650 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Synechocystis # 170 327 43 199 201 79 33.0 1e-14 MRKSVKSMLSPLGKAVALACSLAMCVSLAACSSSSSDSKSSSSDSSSSSDSSDKKGQIAG VTAKGKLGEKPTISFNTPMTVSDGSYVVLQKGDGDVIEEGDRVCAQGIALNVKDGTELMD TWTKNTPDCSLKVDSKTLSSTYYNQIKGAKINTTIGFGVNAQDSSGYSYILAMTFVSKSK DLEKATGEEVKDVPANLPKVTRAKNGEPSIDMNGQGSVDSLISQTLIKGNGAKLTDKNTV VVKYTGWLTNGKQFDSSWDRDSTIDADLFSDSSGQHQVIEGWQKGLVGQTVGSQVLLVIP PDQAYGDKEQGPIPANSTLVFVIDILAAY >gi|316916494|gb|ADCN01000012.1| GENE 12 9613 - 10692 845 359 aa, chain + ## HITS:1 COG:no KEGG:BLD_1119 NR:ns ## KEGG: BLD_1119 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 359 1 359 359 600 100.0 1e-170 MSAEEQTTRPDKGAKRPSRHAKIMRGVVTPIFGLLAVAAVVLGYMNATMWKPSTEITASA TMSGSRYVVTDPNVLTLLDQNATITVDSGSSQDEACVALGSSKDVAGWVASEKSYTRITG LASWSELSTQKGSSTSQGAPTSADDAVSFKDSDMWTAVKCGTGSVSLKSKKTGASTVAIV DLGENVTNAKVQLHWVRSEVPDFAMPFYLSGGLLAVLAVLCASVFAMPPHKRRKRMVEGM ASAVIEEEAPASIAVSGKPDGASRRNRRRHATHRRSGRASSQSSQSEATETPVIIDPSSR NLVADQQTGAESGAEPGLSAGDNESTSVITPDELQAYFSRLAQEVNTGDDSADDGQEES >gi|316916494|gb|ADCN01000012.1| GENE 13 10692 - 11699 1234 335 aa, chain + ## HITS:1 COG:no KEGG:BLD_1118 NR:ns ## KEGG: BLD_1118 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 335 1 335 335 613 99.0 1e-174 MNKRWNKLCVSALACVALVVPLTACEGQLPTPAADTSTKVAPDLTEAQEKKIRLKILKTI DEADQAKNPDGYATVMGGPQLDIRISQTTINQRGGGMSEYATIPKDIAQTVIPTDDGWPR SVFTITTTTEDQQSKRLLVFDQESAQQNYKLMAMARLFEGAKLPKFEIPTIGSQMGTAKD EKLVAAPADALAQYADVLQNGSKSQYASKFADDLLRQELANTTAKVQEGMQRNNGTQEQK FTAVPEQMWVMRAADGAGDLVVGRINGEWTRKAGDGRESQPASDDEKALFNSDKYTSTMK VTYVNVVALYIPLASSGEQITAVGADRQPVKVEAL >gi|316916494|gb|ADCN01000012.1| GENE 14 11946 - 12920 1407 324 aa, chain + ## HITS:1 COG:ML1159 KEGG:ns NR:ns ## COG: ML1159 COG3118 # Protein_GI_number: 15827586 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Mycobacterium leprae # 12 324 1 301 301 97 28.0 3e-20 MAEQQFNPGVSLAGAVDLEALKHQVKAKPGQAGGAPAAGGYVIDTTENTFQAMVQTSATF PILLLLWIPTDDRLFPMARALGDAVNALNGQIQLSRIDISSNPSIAQALQVQGAPALFAL IAGRPMPLLQGLPGDDELKQLTDEVIPKIIEAAAQSGVNGTAPYSGDPDSDAAKSAGATG AVAGAEQVPPEHAEAHRLAEEGDYAGAAAEYERVLGSDPSDALAARERAKALLLARSGAA DVRDVRAAAAAAPDDVEAQLAVADIDMIGGQIQDAFDRLLDFLAAGHKADIEQVRKRLLE YFAIPEPTDPRLTRARRRLATLMY >gi|316916494|gb|ADCN01000012.1| GENE 15 13003 - 13617 637 204 aa, chain - ## HITS:1 COG:all4694 KEGG:ns NR:ns ## COG: all4694 COG2954 # Protein_GI_number: 17232186 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 76 179 44 153 153 58 32.0 6e-09 MSEPTDDFEYERRFFCRELPAEYDDGDAPTLIIQSYYVHADNYALRVRLVSHKVHVDMTS DVNPVAVLDEYRDRFSEAYVTVKGPSVGGTRYEVDTRIAAELIKRGGSVIIKNRYSVWIE EDGWSVDVFGGPNAPLIVAEAERSGPVTNLTIPKFCITEITDQARFNNDGLANRPFCKWA DDFKEELALEGPRFQQYFGKNRMV >gi|316916494|gb|ADCN01000012.1| GENE 16 13862 - 13999 74 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVLVLVLVLVLVLGSGPVMPARLGRGKTARFGENGSRIVWNRLE >gi|316916494|gb|ADCN01000012.1| GENE 17 14187 - 14576 709 129 aa, chain + ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 6 127 14 134 137 107 46.0 4e-24 MSEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKN IKHILDTAGTGIEHVCRATIYLKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGAL VEIDAIAVE >gi|316916494|gb|ADCN01000012.1| GENE 18 14759 - 15676 856 305 aa, chain + ## HITS:1 COG:no KEGG:BLD_1114 NR:ns ## KEGG: BLD_1114 # Name: plsC2 # Def: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 305 1 305 305 585 99.0 1e-166 MASKGKPSPRSAVSPLSDEQVKRLAARHTLVDSTQYYPTGPRTPNQPEINAQNPKATKRL LGGVSIVFRASCKTKAWGLEQVPETGPFITAASHITMFDVFVPMMSLFHMGRRPRYMAKA EMAKWPLIGKWFQLVGMQPVQRHSGKAKQIEETSIDILTSGRPLTVWPEGTVTRDPKKWV MSIKEGVGYIALESSRRLGHQVPLYPAVTWGAASINHWWPWPRKNVVMCYDHALDYSDLL ADMDSWGEEPPAEAVNELMWRVLKRMNTVLEEIRGEQFPAEGYWDYRSMSRKPWPEAGGP FPAEK >gi|316916494|gb|ADCN01000012.1| GENE 19 15770 - 16771 1167 333 aa, chain + ## HITS:1 COG:Cgl1288 KEGG:ns NR:ns ## COG: Cgl1288 COG0240 # Protein_GI_number: 19552538 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Corynebacterium glutamicum # 4 333 3 332 332 270 45.0 3e-72 MGKNITVLGAGAWGTAFGQVLADAGNTVTMWAKEQQIVEGIRDHHHNAVRLPSVEKLPDN MTATGDRAEAVKNADIVVVAIAAQFARVALVEFKGLIPDHAIVVSLMKGIERGTNKRMDE VVRESLDLPADRFAAISGPNLSKEIADRHPAATVVACTNLDNATKVAEACTTSYFKPFVT TDVIGLEMCGSLKNVTALAVGMARGAGYGENTAAMIETRGLAELTALGVAAGADPKTFFG LAGVGDLIATCGSSLSRNYTFGANLGKGLTVEEATKVSNGVAEGVPTTDAVVALGDQLDV PTPLAYQMSRVLNEGISCSEMLAGLFGHEVTGE >gi|316916494|gb|ADCN01000012.1| GENE 20 16958 - 18145 1475 395 aa, chain + ## HITS:1 COG:STM0380 KEGG:ns NR:ns ## COG: STM0380 COG1181 # Protein_GI_number: 16763760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Salmonella typhimurium LT2 # 1 394 1 351 364 274 40.0 2e-73 MAKKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDPRGWN LDGGELPTVKITPESRPVMLDPSRGQDGFFIGEPSHINSADSGFGTSFVSMSDPEMHHVL TSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGI PTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRL AAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFD SKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPDGTVMVNEIN TMPGFTPISMYPKAWDATGVSYTELITRLIEGVLR >gi|316916494|gb|ADCN01000012.1| GENE 21 18411 - 19136 1322 241 aa, chain + ## HITS:1 COG:AGc3890 KEGG:ns NR:ns ## COG: AGc3890 COG1840 # Protein_GI_number: 15889428 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 203 121 325 368 123 37.0 4e-28 MQAWDKIPDTAKDADGAYYADYTGIMSVGWNADKYGDISSLDDLLDPKFAGTVALNGKPA EAGAAFNGYLMANQLAGGDINNLQPGLDYFKKLKEAGNLTTVDVTNGTIDSGQTGVVFDW TYNQASYKKELKDKGVNWKYKTFPKAQVVSYYNQAINKDAPHPAAARLWEEYLYTADAQN LWFKGGANPVLLDSMKEDGTVDQATLKDAITIEGEPVSYTNDDSTRITEWLQNNWDKTIG N >gi|316916494|gb|ADCN01000012.1| GENE 22 19148 - 20098 1254 316 aa, chain + ## HITS:1 COG:BMEII1121 KEGG:ns NR:ns ## COG: BMEII1121 COG4132 # Protein_GI_number: 17989466 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Brucella melitensis # 22 316 2 296 297 176 38.0 6e-44 MTAAIAPIASNGPAAAKAAGPSATPASPLSSAMAKHRQELGALAATLPFFAYTACFLLAP TVIVIVGAFQDRSGNFTLANFNKMFEANTIAAFGTSILVSLASSLIGAVVGVLASYALVI GAKPDGLLRRMVSAISSVLAQFGGVMLAFAFIATIGINGIGTMLIKTLTGYTVNPNWLSS LPGLVTIYCYFQIPLMIIIFLPAVDSIRPQWREACESLGGNTFQYWTRVACPILAPRFIS AFLLLFASAFSAYATAAALFSQRSILVPLMIQGAMRNELDPNQQGFAQVLAFAMIIVVAI VMLLSHAVEKRAGRWQ >gi|316916494|gb|ADCN01000012.1| GENE 23 20095 - 20949 1253 284 aa, chain + ## HITS:1 COG:BMEII1122 KEGG:ns NR:ns ## COG: BMEII1122 COG1177 # Protein_GI_number: 17989467 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Brucella melitensis # 20 274 14 262 272 115 32.0 8e-26 MTETSATKPPQLRAARARKQSIIKFVILFVTLAFLFVPLLAMLIFTLRHPLSGRWSAAPW IAIFTGNGESLGADLTVLWQGIGTSLALSAVTVVIMLVLLVPTMVIVHIRSKVLERAIEW VATLPLTIPAIVLVVGLGPIYRWLSADVLSTNPIWLCFAYVILVMPFAFRAIAVGLNSID VKTLVEASRSLGASWPKVFFKVIIPNLWQSILSASFISIAVVLGEYTVASLLGRMNLQVA LYQLGQSNSQISTAMSLLALLFGVVLLVALDLISDAMRKSREGK >gi|316916494|gb|ADCN01000012.1| GENE 24 20954 - 22231 2052 425 aa, chain + ## HITS:1 COG:mll3065 KEGG:ns NR:ns ## COG: mll3065 COG3842 # Protein_GI_number: 13472692 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Mesorhizobium loti # 69 374 6 313 354 274 48.0 2e-73 MNSNSIFTRRHAGADAAASVSAPATTSAAAEDAFKNDPTATLEGVRGKDVTKAAKALLKD SVKRGGGSIQMRDVVKIYPGSTVHALDDFNLDIKPGEMVVLLGGSGCGKSTALRSLAGLE DIQGGRIMVGGQDVTGVPVNKREMAMVFQAYSLFPHMTALENVEFGLEVRGMGKAERRKI AMEQLELVGLADQAKKYTQQMSGGQQQRVALARALAVKPRVLLLDEPLSALDAKVRVQLR DQIRRIQLTTGTTTVFVTHDQEEALAVADRIGVMNKGKIEQIAAPQNLYQRPATEYVATF IGLTNRLPGASNGDESVVFGQRVPLLAGSAKGDSVAVLVRPENLTLALAGSSDSHVGERA RVEVIHFLGSLVRVDTVITSGEYQRWNKGEQLKATVQLPASELPAGLAVGDDVIVTPRPV AALAC >gi|316916494|gb|ADCN01000012.1| GENE 25 22534 - 23568 1017 344 aa, chain + ## HITS:1 COG:no KEGG:Blon_0325 NR:ns ## KEGG: Blon_0325 # Name: not_defined # Def: abortive infection protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 344 1 347 347 612 96.0 1e-174 MSEPMPPAQQPQQPQQPQQTPRDWWFTAHRRFSTIGSALAIMMVFWIGLNILATEALRTL LGTDVPAWAVLLASSGPLYVVAMPLSMLAFTRVPVIRTRQYPMKAGEFIQIFVMCIPVMF LGNMIGNILSAGATDGQAANRINDVILGSDWRMNALFIGLLAPVCEEWIFRKEIISRLRR YGEKTAIMFSALAFALFHMNVFQFFYAFGLGLMFGYVYTRTSRLRYSVAMHMLINLNGSV LAPLVIQQIDPRILDGTVSEAEIMRMAETGNMGGMGIMMLYGTVMLGLCIAGIVLLITKR KSWEFYLAPEELPAGLKIRTAYANPGVIAYLLLTVMLTGWMLFA >gi|316916494|gb|ADCN01000012.1| GENE 26 23607 - 24404 913 265 aa, chain - ## HITS:1 COG:alr1196 KEGG:ns NR:ns ## COG: alr1196 COG0668 # Protein_GI_number: 17228691 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Nostoc sp. PCC 7120 # 18 222 99 306 357 102 31.0 6e-22 MTEYAEDIARWFQVNAGKLIWLAIVLAIVFVADRVISRVLRKILDNSQIPSASIFVNLTR VTIWVTGAAMVLQPVFGINPTTLITALGVGGVAISLGLKDTIANIIGGFGLMLGRVIQPG DLVTIQGVTGTVHDITWRQTVVRTRSGDMMVIPNSVLNTAALTKLTPVSEGMATLEFTAK ASGDPSAISQDILDRVTKATADVALEGQPPLVKFTGFSPYGMTGQVLVFAREGVLPSTIK DMAARAIAGSGTEYLVEDGGSSGNL >gi|316916494|gb|ADCN01000012.1| GENE 27 24485 - 25918 1703 477 aa, chain - ## HITS:1 COG:Cj0087 KEGG:ns NR:ns ## COG: Cj0087 COG1027 # Protein_GI_number: 15791475 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Campylobacter jejuni # 8 461 3 456 468 432 48.0 1e-120 MSETSNKTRLEHDCIGQMEVPANVYWGIHTQRAIGNFPVSGITDSQHPELIRAYATVKRA CAIANEELGLIDPAKAEAIRAACLEIEAGKLADQFPVDVMQGGAGTSSNMNMNEVIANRA LEIAGRQRGDYTYIHPNDDVNKSQFTNDTYPAACKLALIDAIGPLAESTKKLAKAFHDLA DKHINDVTIGRTQLQDAVPMTYGQEFHAFATLLKSDLAAFDRVVPLLAQLNLGATAIGTG ICADLRFRKSAIKHLAQITGLPVTAAPDPVAAMTDMGAYVATSAAIKSLAVHLKKAADDL RLLNSGPRCGFNDLNVPARQAGSSIMPAKVNPVIPECVNQCCFTIFGMDVTVNWAVAEGQ LQLNAFDPVMVHELLTGMALLTRAMETFRVNCVEGIEINADLGRSYAQSSPSISAALNHY IGYEHAADIAAEAVHTGRTVREVAGERTDLPAEQLDEILDPIRLARGLGQTCREHQE >gi|316916494|gb|ADCN01000012.1| GENE 28 26036 - 26767 881 243 aa, chain - ## HITS:1 COG:no KEGG:BLD_1104 NR:ns ## KEGG: BLD_1104 # Name: not_defined # Def: AcrR-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 243 1 243 243 479 100.0 1e-134 MPRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELA DSAILHQVESIPINRTPDPNGNPEEQWRDRVTATLSDPEQRQRLDHLALLAGPHSTLELT ESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAVLQRWPELSDTIEIKDLLKED VAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSTAPGMPVAATHAAPSTISSSNGPAGFPG YTA >gi|316916494|gb|ADCN01000012.1| GENE 29 26858 - 28360 1386 500 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0296 NR:ns ## KEGG: BLJ_0296 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 500 1 500 500 925 97.0 0 MVNCCAQPHGRTQSQDHMTQGDMQYQRKQEVRMTGIIDYAHTETRSFADLPFNEIDALII STLIYEDVASICPTLMLDETRSGSFAARIRAFEPKHPLIWLKGIWHPELESVSLDEANRE LHRSPETHADDKPHEAQMVSVVNPDLTHDLFQAAGENPRYANVRLGAVVEHINQGEQTQF AAATFQLPDGHKRRKPTYKGTLVISFRGTDDSLIGWKEDFNMAFQYPVPAQRSASAYLDT VARLWEGPIILVGHSKGGNLAIYAAMNADPKVRKRIQHVYSLDSPGFPPEIVTSPAYRTI QPKVTKIVPSSSIVGMIFETPEPCRVVSSDSDGIMQHSAFTWLLDGDQFITEPDLSSSSQ LFNEELNHWIATLTPEQRERAVDALFTVLHANGATSFSEVMSNFPASIPAMLGAYVGLTP ADRRHLVEALAILFKASTAKRKPTPAPASAPSSATSKATAEIPAETAAGADSAAPARADT DADAGTTASPSAEDATEIAD >gi|316916494|gb|ADCN01000012.1| GENE 30 28585 - 29085 433 166 aa, chain - ## HITS:1 COG:SA2335 KEGG:ns NR:ns ## COG: SA2335 COG0350 # Protein_GI_number: 15928126 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Staphylococcus aureus N315 # 3 164 16 167 173 127 40.0 6e-30 MMMASDGEGLTELCLEDWWWATDHQAVLDSNRESDREPDVFRMTRVWLTAYFAGERPGLD QTPPLHPAGTPFQHEVWNLVAEIPYGMTVSYGELAAELAERRGGGRMAAQAVGGAVKRNP VTIIVPCHRVVGSGRAFGGYGDRLDIKAELLELEGVDLARFDLPNP >gi|316916494|gb|ADCN01000012.1| GENE 31 29144 - 29329 66 61 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0299 NR:ns ## KEGG: BLJ_0299 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 36 1 36 131 67 91.0 2e-10 MCYLHRQQVTKIRQSQEKAKPPRVPPVFQRLSSAEVKFPNYADVPSFMESGTVWASSLNA R >gi|316916494|gb|ADCN01000012.1| GENE 32 29983 - 30207 243 74 aa, chain + ## HITS:1 COG:no KEGG:Blon_0332 NR:ns ## KEGG: Blon_0332 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 74 41 114 114 126 98.0 2e-28 MVCTTLNFAEKYLLKTEVRSVAGMSGGTSDAGTDFDVDLGGEGDLGSDHATGFNRSLSAD DYWAAAGYADESLY >gi|316916494|gb|ADCN01000012.1| GENE 33 30621 - 30854 171 77 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0307 NR:ns ## KEGG: BLJ_0307 # Name: not_defined # Def: vacuole effluxer Atg22 like protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 77 72 148 148 114 98.0 1e-24 MHRHHDSPMISRVPRSHYCFFPKTASIIGTFLVATTTSLTGNASLGVLSIAVLLVAALVF LLLQKDPTRANVLRHRR >gi|316916494|gb|ADCN01000012.1| GENE 34 30881 - 31234 251 117 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0305 NR:ns ## KEGG: BLJ_0305 # Name: not_defined # Def: flagellar FliF M-ring protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 64 117 1 54 54 104 98.0 1e-21 MWNEEAREARGLRRMSVTVSSPADERKGRDWFHAGLVCRRAAIDAGSVRCSAAVAEQAVP AAHVGLFDSLKNFAADNLGNVLGGDFNLGSIGDLPAVIGEHFNADQLGEINRSLATI >gi|316916494|gb|ADCN01000012.1| GENE 35 31231 - 31416 214 61 aa, chain + ## HITS:1 COG:no KEGG:BLD_1097 NR:ns ## KEGG: BLD_1097 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 61 1 61 61 79 100.0 4e-14 MNADRLDELQALAEENISADQISQVAGAIQEQGANLDLGSIAEQAGLPADIISQISGLLG K >gi|316916494|gb|ADCN01000012.1| GENE 36 31475 - 31759 89 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457120|ref|ZP_06596510.1| ## NR: gi|291457120|ref|ZP_06596510.1| hypothetical protein BIFBRE_04351 [Bifidobacterium breve DSM 20213] # 1 94 1 94 94 164 100.0 1e-39 MFGRWAHYGMPSMSPATIFGLQSPVIRAQPQVASAEFRHSVDLSSFNIALHETEAFPAMR GQLVSPATTNPLRPTYTSVYSSARNRLPTTHMIC >gi|316916494|gb|ADCN01000012.1| GENE 37 31795 - 32883 918 362 aa, chain + ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 66 1 66 189 65 45.0 2e-10 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD LVLGDVSRPAASASAAGSSNVDSSAETASPLAASSKTAGIIAPIAELAQDITGYDEHRRR FALLIAGGVAAIVAGVGIGNLFDSSNSILGATPLNDFLTFLCICVGVIAGLAMLIPGGLS RTDFKRRHPYVEDFYTGEDRSRELRLLVIGIVGGLAAILIGIAVTVYADDMLGVSDGWPN AIFLLLCAPGVFGFVYCGMRYSLLNINAYNKAAEDDRKEHAGEQDVYVKLTGAVCGIIML IATVIGLCLLFLNPAALRGDWSAVGSSAADGAMFWLPWPIGGVLCGVAALAIQLVKDYRE RK >gi|316916494|gb|ADCN01000012.1| GENE 38 33081 - 34124 683 347 aa, chain - ## HITS:1 COG:pli0038 KEGG:ns NR:ns ## COG: pli0038 COG0798 # Protein_GI_number: 18450320 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenite efflux pump ACR3 and related permeases # Organism: Listeria innocua # 1 347 1 347 352 380 66.0 1e-105 MKKEADPGINFFQRYLTIWVFLCMVVGVLLGHFAPVVPALLARLEYARVSIPMAILIWVM IYPMMLKVDFNSVRNVGKNPKGLFVTWIVNWLIKPFTMYGIASLFFFVIFKAFITPDLAV EYLAGAVLLGAAPCTAMVFVWSTLTKGNPAYTVVQVATNDLIILIAFVPIVKFLLGVSNV SVPFDTLILSVILFVVIPLAGGILTRVFVTRSKGTEYFENVFIHKFDSITTIGLLLTLVL IFMGQSEVILENPLHIILIAVPLILQTFLIFFIAYGACKLLKLPHDISAPAGMIGASNFF ELSVAVAVALFGTTSPAALATTVGVLTEVPVMLTLVKIANKTKQSFR >gi|316916494|gb|ADCN01000012.1| GENE 39 34121 - 34531 166 136 aa, chain - ## HITS:1 COG:CAP0105 KEGG:ns NR:ns ## COG: CAP0105 COG0394 # Protein_GI_number: 15004808 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Clostridium acetobutylicum # 3 130 2 129 136 147 53.0 6e-36 MEKKRVAFICVHNSCRSQIAEALGKHFASDVFESYSAGSETKPQINQDAVRLMKELYGID MEQSQYSKTFDSIPEPDIAISMGCDVGCPYIGRAFDDNWGLNDPTGCPDEAFREIISQIE GHIIRLKIRIEGGVYG >gi|316916494|gb|ADCN01000012.1| GENE 40 34534 - 34911 333 125 aa, chain - ## HITS:1 COG:asl1510 KEGG:ns NR:ns ## COG: asl1510 COG0526 # Protein_GI_number: 17229003 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Nostoc sp. PCC 7120 # 48 122 6 80 80 62 41.0 2e-10 MGLFGFGKRKEEGGKTVACACNGACETYEAETVNGSCCDEASNSICCIKVLGSGCKNCHA LLENTKAALNNMGLSIQPEYITDMEKIMAYGVMSMPALVVNEKVVSMGKVLKAADVEKLI HKLGY >gi|316916494|gb|ADCN01000012.1| GENE 41 34957 - 35970 792 337 aa, chain - ## HITS:1 COG:MTH894 KEGG:ns NR:ns ## COG: MTH894 COG0701 # Protein_GI_number: 15678914 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Methanothermobacter thermautotrophicus # 30 331 17 325 327 261 44.0 2e-69 MEILRLTWLFIQDQVLGMKWLNTVIGNGLSVFGLDTTSRLGGSIQFFLYDVVKITVLLCV LIFVISYIQSYFPPERSKRILGRFHGIWANIIAALLGTVTPFCSCSSIPLFIGFTSAGLP LGVTFSFLISSPMVDLGSLVLLMSIFGAKIAIVYVVIGLVIAVIGGTVIEKMHMENYVED FIRNANSVDVESDALTVRDRRIFAKEQVIETFKKVFPYILVGVGIGAIIHNWIPESWIQT VLGSNNPFGVVLAVLVGVPMYADIFGTISVAEALLAKGAQLGTILSFMMAVTTLSLPSII MLKKAVKAKLLGLFIVICTLGIVIVGYLFNVFQHLLI >gi|316916494|gb|ADCN01000012.1| GENE 42 36264 - 36398 62 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQAHFSPVRSNSKICKRFSSQNALNTFMVSVYADATNLTSHSLF >gi|316916494|gb|ADCN01000012.1| GENE 43 36568 - 37845 1697 425 aa, chain - ## HITS:1 COG:CAC1585 KEGG:ns NR:ns ## COG: CAC1585 COG2270 # Protein_GI_number: 15894863 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 17 425 4 414 425 328 45.0 2e-89 MTDPTNVHEPVPQSAKLTAREKKWIVYDVGNSAFVLLSTAVIPIYAKSLMPADGNIVSAW GYAQTIASLVIALLMPLLGSIADVQGMKIKFFLGFFGTGVVTCCAMALPLTWLPFLIVYI LATIGLNGSLTFYDSMLIDTTSNERMDKVSSHGYGWGYIGSTVPFIFCIALIFGGPALFG WSTVACTRASFIITAIWWAAFTIPLITSYRQVHYRATRDQLGSAVRGTFSELAGTFGKIV KNKPLWMFMIAFFFYIDAVNTVISMSTSYGAELGIDSTQLVVALLVTQFVAFPCAILYGR LSGRFGSKTMITAAVVAYMCIVFFASFFLKSAAEFWILAILVGMFQGGIQALSRSYYGKI IPKNHANEYYGFYDIFGKTASIIGTFLVATTTSLTGNASLGVLSIAVLLVVALAFLLLQK DPTRE >gi|316916494|gb|ADCN01000012.1| GENE 44 38070 - 39086 1365 338 aa, chain - ## HITS:1 COG:STM2144 KEGG:ns NR:ns ## COG: STM2144 COG0524 # Protein_GI_number: 16765473 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 18 313 22 297 321 95 27.0 1e-19 MLNLKRGIGTHEPSVISLGQVWVDIMLNVDEVPAQGGFAVADHPKPSIGGSYRVLQAASR MGVPTEHAGILGNGLWAHFIRQSFQDNGITHIGQDRLDEDSGFRVVLSSGAPKKTFIASY GAEAHGDADTFNTLEPQPKDVVHISGNTLMDHTATGVDGFLLKAGTDPAARDYTLVINPT NTLRLVNDHMLEDLVLARPVWSCNRQEAMTLAERLGAPIDDSKVTIGGGLDDFMHQLCDG LGTTLRAPLVVRVGARGAWIREPGGETIHIEGYPTKAVHTRSAGGCHTGVMCAMLAKGHS LAESVKIANAAASIAIQRSLNGVPQCPDYDEAIALIGE >gi|316916494|gb|ADCN01000012.1| GENE 45 39457 - 39651 335 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23464931|ref|NP_695534.1| 50S ribosomal protein L28 [Bifidobacterium longum NCC2705] # 1 64 1 64 64 133 100 4e-30 MAARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQ RVAA >gi|316916494|gb|ADCN01000012.1| GENE 46 39693 - 39758 63 21 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLILAYSIRTAPLGRRNNKTR >gi|316916494|gb|ADCN01000012.1| GENE 47 39751 - 42594 2670 947 aa, chain + ## HITS:1 COG:ML1671 KEGG:ns NR:ns ## COG: ML1671 COG1200 # Protein_GI_number: 15827885 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Mycobacterium leprae # 295 938 202 736 743 318 36.0 2e-86 MSITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMA FAAVIRDMRVVPMNARRGYRLEATVDDADFARSRHVPGSTARLTFFSYRKSYVDWVSMRL RAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGLEGYARGAASGNGAFAGSADP YASAQSAYPPAAAAPSGASLKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLL WMMGARTSSTPDGQLAGAGSAGIVAPTTDTIAVQNGEEKSGTTAESGAEALSQSIPDVLP ESVRKAKNLMHRAEAFLAIHDPASTARFKEAIETLRYEEAFVSQTSLLKSRQHAHKSSAH PCPLNEALETARASVGEAVAEPSTQPEASERGSATDLPNLPNLPNLRDRFIASLPFTLTA GQSQVVDDIASDLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAE QHYETISKMVSGLTLAQPGAKETDAAADVEGAMGASGASTVSSSKVTAEIPVTLLTGGMK LAARRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDD GTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADAATMGRMFAH IRARVDAGERAYIVCPRIDADDEENEGGSGVSAAAGSARGRAAASGSSARTAAGGRATRA AADAIGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKT QVMADFAGGETPILVSTTVIEVGVDVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSW AFLISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVLGDAQSGGKSSLKLLRVV KDADMIADARTRAEQLLAADPELAGEVQLAGAVLDFTRGNETFLTSS >gi|316916494|gb|ADCN01000012.1| GENE 48 42821 - 43432 217 203 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 192 13 199 199 88 32 2e-16 MRVISGRFKGVALATPKTGTRPTTDRTKEAIFSHLDSWGVLDDARVLDLFAGTGALGIEA LSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASLKARVLVKKAEQVAGGFGEPFDV IFIDPPYAYETAECNQLLSDLAAGSATNENTVIMLERSVRSDDPTAPGGWQITESRNYGE TAVFYIESADDDSDIERSDDSAA >gi|316916494|gb|ADCN01000012.1| GENE 49 43456 - 44271 959 271 aa, chain - ## HITS:1 COG:Cgl2001 KEGG:ns NR:ns ## COG: Cgl2001 COG0336 # Protein_GI_number: 19553251 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Corynebacterium glutamicum # 1 254 15 288 292 228 45.0 8e-60 MKIDIVSVFPEYFEVMNLSLMGKAQAKGLLEIKAHNLRDWTHDVHHSVDDTPVGGGAGMV MKPEVWSECLDELLGFSQPSGSPAPSGAPVLIFPNPSAPLFTQRDATELSHADHLLFGCG RYEGYDARIPDYYRAQGVDVREYSIGDYVLNGGEVAVSVMLEAITRLMPGFMGNPDSIVE ESYTGEGALLEHRQYTKPAVWRGIAVPDVLLSGDHGKVDRFRRDEALARTAEIRPDLIAA LDCKALDKADRKTLMALGWEVSAAHPRRLAD >gi|316916494|gb|ADCN01000012.1| GENE 50 44345 - 45991 1591 548 aa, chain + ## HITS:1 COG:CAC1687 KEGG:ns NR:ns ## COG: CAC1687 COG0826 # Protein_GI_number: 15894964 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Clostridium acetobutylicum # 8 279 3 274 406 325 51.0 1e-88 MNLPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYA HERGARVYVTCNVLPRNNEIEAMHEYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHV STQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRANIPDDLDIECFVHGAMCMAFS GRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFHDRV IRPGDPDFGQGTEDQVMRNADAAFAGVADEGYDRGSDTAVADSVTGSVAAERDRVTVADA VDSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETDWKHAAVRPAPHVELPEWLLE ETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRT KKPTLKAE >gi|316916494|gb|ADCN01000012.1| GENE 51 46071 - 47051 1281 326 aa, chain + ## HITS:1 COG:Cgl2104 KEGG:ns NR:ns ## COG: Cgl2104 COG1496 # Protein_GI_number: 19553354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 36 255 11 216 246 117 34.0 3e-26 MPEYSEEILDSNSISSTDKAGRPIPVTIPIALAPGIKVVYTTRLGGLSAGDYGNLNLGGK SGDEPEAVLSNRIALAEAVQARLSLVSQVHSGVAVDVDDSFVINTPFGFDVSGTHGETDT PHVIEADGQVTAQSGIALGMFAADCLPVLLGDPVTGIIGAAHCGRRGLERGVIGATVDLM KSKGADPANIVATLGPRICGDCYEVGDEIADQFIKRFPLTKTKTRFGGAGIDIAEAAMID LAFAGVHQVVDSMPRVHAATQYLEEDPELAELCRTDGEGPAELAERIDNISHSMCTLENP LWYSHRRAALANKTHEGRLLALIVRD >gi|316916494|gb|ADCN01000012.1| GENE 52 47131 - 48006 280 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 30 261 3 222 234 112 33 1e-23 MTERDFDTPVETPTVQPAPAQGAKPAQTVPVVAVVLAAGFGTRFDPDNPKQLVSVGGKPI VCWSIDAFEHCDRVSDIVVVVNPKVRGEVETLVGEMGYTKVRVIIDGGDERVDSTAAALD MLATAGIPDDAKILIHDAVRPFVEQSAIDGSIDALDQFTAATVAYASTDTVLLTEDLGDL KVVKSVPDRPNTFRAQTPQSFRFATIRHAYDLAAADPDFHPTDDTRVVVDYLPDEPVAIV SGAETNLKITTLEDIPTAERIAEEILGRDPKEEARARMHALLAQAAGQMHR >gi|316916494|gb|ADCN01000012.1| GENE 53 48016 - 48693 741 225 aa, chain + ## HITS:1 COG:BS_pcp KEGG:ns NR:ns ## COG: BS_pcp COG2039 # Protein_GI_number: 16077334 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Bacillus subtilis # 6 213 5 203 215 116 36.0 3e-26 MRELNVVISGFDHYDGVEVNPAVEVPKAIAEQGLGVSSAPDDPLEQVAVTVHAVSIPVSF AKAWPTLKETIEATKPNIVIATGLKHAARGVMLERCATNLMDAIKPDADNVIPRREPIDP NGPAAYWTRLPLRSILNDFTDDSIPATLSSDAGTFVCNSLFYNLLNWTATQERVLGGFVS FPPVVPAHSSQHGLPLDQQIAAGRDVVREAVRYYLKPSSSDILIA >gi|316916494|gb|ADCN01000012.1| GENE 54 48841 - 50445 2019 534 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0334 NR:ns ## KEGG: BLJ_0334 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 534 1 522 522 515 96.0 1e-144 MVDRFPVVLRGYDKEKVDAAFDATQESMKRAQQTLASMREQIAADDDRILQLQAQLQEEK NKKPEGNSFASLGANAQQMLASAEQTSTELLERAKQDASSIRTTAQAQAETLINNAKLDA QHIVDDANAKAASILTNASNQAESVTTSANEDAAQLRSETAKTITEQRQTVELELSNARE EHTKKMASERSTQEREIADMKAEATQQVAAMRKSANEEITKLKSDSNDQIEAALAEANKK LADVREQVSKMMTEAQRKASEIIDAAKTKGQEITDEAEVKRTSTMSQVNAEVEQIRHDIA AQQDEATKKVNELLQHLEERRVAAKREADELVGQAKNTRDQADSYAASKREEADIQAAAI VHKAGEEADAQIEERRAAAQSELDGLSKRIADLQERESVITQRVSELRSMFSQAFSGFAF GGNAAASGQDQEAAAVAALPVVAPVPEVKPVHNEADDQPGELSGNESAADDHNETDAAPA DSADSADSADSADSADSAAQNEQSESSEPSEHQTQGEPEAPTQENPAVSEQNGE >gi|316916494|gb|ADCN01000012.1| GENE 55 50560 - 51903 2063 447 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 7 447 3 442 450 298 37.0 1e-80 MSELTPLTGEALNTLRGDFAQSGTNRLAMNAVTAAGIDKVARNYDRARLMQRRFSTIVDN GEATHQDRSGRCWLFSSLNVARFVAKKNMNLKEFEFSQNYAMYYDKLERVNYFLKDVAAL VAAGEPSDSRLMQHLLADVMGDGGQWTMAMNVYKKYGAVPKDLFPETESSKNTGEMNIQL RHMLHTAVAHMYAADGDASKVEAIIADATAAGHRILTIHLGEPPVSFDWEWTDKDGEFHR DGEITPVEFWKKYVGPADLEDYVCLVDDPRTEHAKGKKIGIEHLGNVAGGDATEYLNVPN QFMKDCVKQILVEQGIPVWFGADCHPFMDRENGAWATDLFEYGRVYDVDFDLDKEARVRF GDSAMNHAMAFAGVDVADDGTTRRWRVENSWGAKIADKGYFTMSDDWFTEYVYEVAVPKA LLPEEYQKALEEPATMLPAWDPMGALA >gi|316916494|gb|ADCN01000012.1| GENE 56 52195 - 53328 1249 377 aa, chain + ## HITS:1 COG:NMB0307 KEGG:ns NR:ns ## COG: NMB0307 COG0722 # Protein_GI_number: 15676225 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Neisseria meningitidis MC58 # 25 373 7 346 351 362 54.0 1e-100 MAALRGPDSSEDERRLGEQAVFPETVDVNIRQLDPIPAPRAFLREQPLTDEMSELVLHSR QEIRDVLNGRDDRLLVIVGPCSIHDPKAAHEYAEKLAAVKRELEDRLVIVMRVYFEKPRT TIGWKGLINDPDLDGRFNIRKGMWLARKVLTDVLSLGLPAATEWLDPITPQYICDAISWG AIGARNTESQVHRELASGLSMPVGFKNSTDGSIKAAADSCFAAGFEHHFLSINLDGRVIS AETKGNPDCHLVLRGSSHGPNYDAESVRQALEDLKVSKASGPSQHGLVIDAAHGNCGKDE NREAEVIEEIAERLAHGEQGITGVMMESFLVGGHQKPAPLDQLVYGQSVTDSCVPWERTN ELLHTLADAVTARRSAK >gi|316916494|gb|ADCN01000012.1| GENE 57 53457 - 54689 1051 410 aa, chain + ## HITS:1 COG:mll4988 KEGG:ns NR:ns ## COG: mll4988 COG0722 # Protein_GI_number: 13474165 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Mesorhizobium loti # 62 408 9 349 363 357 54.0 2e-98 MQQQEEAAHSLHPLQVGPQPLNTPEELRAIRQAMGEGKNPLVATDVPRWEDQVGVSRIIN RRVLELEPLPTPAQVLAELPLTDQAQEIVAYSRDEIRACLYGQDDRLLVIVGPCSVHDPK AALDYARRLAKLKDELGEQLLIVMRVYFEKPRTTIGWKGLINDPDIDGSHNIRKGLLLAR KTLLGVLKEGLAAATEFLEPTSPQFISDAVSWGAIGARNTESQIHRQLASGLSMPVGFKN ATDGSVKAAVNGCFAAAQQHTFFGIDHLGRACAVETLGNPDCHVVLRGSIHGPNYDAESV AKAMEDVRAEMPAESAASHGLIVDCSHGNSGKDEHRQAEVVRNIASRIAAGEQGITGIMM ESFIEGGNQKAAPLDQLVYGKSITDKCISWEETEALLRELAEAVATRRWH >gi|316916494|gb|ADCN01000012.1| GENE 58 54811 - 55524 1096 237 aa, chain + ## HITS:1 COG:BH3238 KEGG:ns NR:ns ## COG: BH3238 COG0775 # Protein_GI_number: 15615800 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Bacillus halodurans # 3 217 1 213 233 116 39.0 4e-26 MGMKTVAIIGALDEEVALIAKSLTHVTHTAKGSLDIVSGTVDSFGSDVIKVAATVGGMGL VNAAATTQLLIDELAPDAVIFSGIAGNLNTHLHINDVVLGGTLRYLDTDMRLVGQWKPGT ADAPVEEFHSDDRLLEVADEALANAGITHITGIIASGNYFVDTPQKVEEVIRLTGADAVE MEGAAVAQVAARNDVPALVIRALSDNADTDYEVFKDFDISEYADTAARLAVDIVKRL >gi|316916494|gb|ADCN01000012.1| GENE 59 55576 - 55644 120 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAALALLALFLIKESKDKDYEL >gi|316916494|gb|ADCN01000012.1| GENE 60 55775 - 57106 1446 443 aa, chain + ## HITS:1 COG:Cgl0398 KEGG:ns NR:ns ## COG: Cgl0398 COG0642 # Protein_GI_number: 19551648 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 64 439 26 363 386 209 36.0 1e-53 MDIWQIVVIVVLAALILVWVAVIAYNKGRVSGRLAAEQDLSGDEDTHSLFGDDAPVRPTE RRLIEVLPEALIVTDRNGLVQYSSPGSVPFGLVSGDRLNSREVEDILTQAAADGGVRERE VQLPVNHNSYPSSNGRGLEAGQSRPSNTLYLRVRIGDIGDDLYAIFINDMSEQRRFEAVR RDFVTNVSHELKTPAGAIALLAETVTDAADDPDAVRYFSGRISKESARLTELVHHLIDLQ KAQSPQSVIDARRISALDVARAAIAANQTQADSRHVDIRLSVNGQSVPTKVEELADGEGS LEESGSPATNGPMIKADKEAMQTAVKNLVENAIHYSPEHTTVAVGVGERDGKVTIRVVDQ GIGIPAKSLDRIFERFYRVDPARSRETGGSGLGLAITKHCVQENGGRISVWSRTGEGSTF TIELPAAPDEDDDEARSDESTQA >gi|316916494|gb|ADCN01000012.1| GENE 61 57271 - 58008 1042 245 aa, chain + ## HITS:1 COG:Cgl0399 KEGG:ns NR:ns ## COG: Cgl0399 COG0745 # Protein_GI_number: 19551649 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Corynebacterium glutamicum # 12 241 1 231 232 273 63.0 2e-73 MRTGTYPRKATMTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLV LLDLMLPGIDGTALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELL ARIRAVMRRNQATAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYL MQNKGRVMTRHQLIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKI DTPAE >gi|316916494|gb|ADCN01000012.1| GENE 62 58258 - 59391 2201 377 aa, chain + ## HITS:1 COG:Cgl2521 KEGG:ns NR:ns ## COG: Cgl2521 COG0226 # Protein_GI_number: 19553771 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Corynebacterium glutamicum # 48 375 55 375 375 171 35.0 2e-42 MQKNILVRSIAALSGIVMLASVAACGDNTAATTDNSSSSDSTSKSTPISGNFSGAGASSQ QAAVEAWIAGFQGTNPEAKIAYNPSGSGAGVQTFLTGATAWAGSDKALADDEVEQSKSVC TEGTAFDVPVYISPIAVVFNLKGVSDAGKHINMDAATIAKIFDGKITKWNDPAIADQNKD LKLPDTAITVVHRSDKSGTTQNFVSYFKDVTPDNWTYDLSENWPNEVGQGAKGTSGVIST VKQADGTIGYADFSQVGDLGTVAVKVGDKYNEISAEAGSKVIADSKQDDTVKGDNRIVIK INHATEAEGAYPIVLVSYDIVCPAYKDTKQAEFAKAWLTYVTSDEGQKAAQDAAGTAPLP SSLKSEITKSIEAIKTK >gi|316916494|gb|ADCN01000012.1| GENE 63 59602 - 60555 1368 317 aa, chain + ## HITS:1 COG:Cgl2520 KEGG:ns NR:ns ## COG: Cgl2520 COG0573 # Protein_GI_number: 19553770 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Corynebacterium glutamicum # 80 315 116 354 355 197 47.0 3e-50 MSSQDKTAVQPVGGKTADKVFRGVAYACGILILVVLAAVFLFLFFRAWPLIGGDQAANSQ TVSSFTGGKASSFWGYVLPLLFGTVLVSLLALLIAFFVSIGIALFISHYAPKKLATALSY VVDLLAAIPSVIYGLWGGLILVPAIYPFWNWVANHLGFIPLFEGPAANPPRTVATVAVVL AVMILPIITSMSRDIFMQTPRLHEEAALALGATKWEMIRLAVLPFGKSGIVSASMLALGR ALGETMAVLMILSPGLNYSIKLLQASQNQTIAANIAAQYPEANDLGVSTLIGTGLILFLI TFVVNFIARKLTEKATA >gi|316916494|gb|ADCN01000012.1| GENE 64 60555 - 61553 1402 332 aa, chain + ## HITS:1 COG:Cgl2519 KEGG:ns NR:ns ## COG: Cgl2519 COG0581 # Protein_GI_number: 19553769 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Corynebacterium glutamicum # 42 329 36 306 307 188 42.0 1e-47 MTAAENTEKTPMDGAPEIDFDRFRPTRSAIQRRNIMDHFMWVLIAVAFVIACIPLISLLW TTIVNGIKRLNLNFLSYNMTGVVGGNQTPSGGYGGVLHAIIGTLEITAGAMVISIPIGLM CAVYLVEYSNRGKLATTVSLLVDVMSGIPSIVAGLFAFSMFTILLGPGTINGFEGSVALS LLMLPTVVKSSEEMLKIVPNDLREASLALGVTKQRTITKIVLRTALPGIVSGAILAIARV IGETAPLLMTAGYISSTNVNLFSGQMTTLPVFVYQEYSKLSANCPPNADATCVTTIPMER AWAAALVLIVIVLLLNLIGRIVAKVFAVKTER >gi|316916494|gb|ADCN01000012.1| GENE 65 61606 - 62385 263 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 10 255 5 240 245 105 31 1e-21 MGQRIDVNHENIYYGDFLAVEDVNINIEPNKVTSFIGPSGCGKSTVLRTLDRMHEIIPGA HVEGEVLLEGKNLYDKDVDPVAVRRDVGMVFQRPNPFPTMSIRENVLAGVRLNNHHLAKS DADDLVEWALRGANLWEEVKDRLDNPGIGLSGGQQQRLCIARAVAVHPQVLLMDEPCSAL DPISTLAVEDLINELKSDYTIVIVTHNMQQAARIADYTAFFNLKAVGQPGHLEYFADTIT MFNNPQNEEAERYISGRFG >gi|316916494|gb|ADCN01000012.1| GENE 66 62682 - 63260 798 192 aa, chain + ## HITS:1 COG:MA2664 KEGG:ns NR:ns ## COG: MA2664 COG1704 # Protein_GI_number: 20091487 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 26 192 21 182 182 171 55.0 7e-43 MSTGLIVGIVVVVIIVVLIGWGVSAYNNLVTLKNRVKNGWAQIDVQLKQRADLIPNLVNT VKGYASHESEVFTQVTAARAGVVAAASNPSTTTAQRAAAENQLSRALFNLQATAEAYPQL QANQNFMDLQNQLKELENKIAYARQFYNDVVLKLNTAIETVPTNIIAGLFHFEQAQYFEA DDASRQVPQVQF >gi|316916494|gb|ADCN01000012.1| GENE 67 63330 - 65594 2648 754 aa, chain + ## HITS:1 COG:no KEGG:BL0310 NR:ns ## KEGG: BL0310 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 722 3 724 756 1414 99.0 0 MRFIRAGIVSIVATVVLAVITLAIIGTSAFGDSADLSYRTLDYDVTATANGDLKVTQHID VKMRERTDSDDNTKPWKQLFQQYTLNSGTLTDISDISVRNVTDGIDYAQQSEPKLPSDVS SDKEWNSDYANHWYIADVSDGSDHPKAYTPGTDGLKPSASATEDDTTVEIGWNIPVTTEA DSMKFDVSFTMHDVATKWKDVASFQWEPFGKKNQVPIGTVTGTVHFPNGITGKTSWAWLH TERTSETKRNSDGSYTFMAYNIHNGDYLDVVAAFDAAKAKGIARKGTGNHLKDLKQDEYK QQQRWLDKQRFAARARLVFWIVSIVLGIALCAWGIWAVISSNRRAQYRGSVEYWRDQPGI SPASAARLIRVVDPSTRQSDEDRQLTATMLSLAVKKAIAVYPGPSDMYRGIDMSQATPVG LSQMIAADQGKQYAAGITSTIVILPLAIDEAPNAQQLGLSESEDALLNLLIVISQRVGSP VFDLNQMKATCQNWQDGYIELGKFTGACSMEYQRLGATRSVGWQWILPGVLAAVLGFGSL LANSFIGYPVAGLIELPIFLVGLFCSMAGAMTVLTDQGQDIAGRTLGLKRYMEDFSNFTD RGAADLALWDWYMVYAAAFGISDRVMRELAKAYPQVNDPAWLDANASNSLFYWNYRPYGW YSHRHNGPFDHDAAGQMDPGISGPAPAYGGTSFAGGFSDLGSQLNSGLADISSTISAAAP SADSGGDFSSFGSGGGSGFGGSFGGSGGGSFGGR >gi|316916494|gb|ADCN01000012.1| GENE 68 65604 - 65861 274 85 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0351 NR:ns ## KEGG: BLJ_0351 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 77 3 79 185 142 98.0 3e-33 MSKRIVRALGLSLVGALILAALCAGALILGTDGADLSYRTLDYDVTATADGDLKVTEHID IKLRKRKDDDGKTKPWRSAGIFPPP >gi|316916494|gb|ADCN01000012.1| GENE 69 65897 - 67642 1563 581 aa, chain + ## HITS:1 COG:no KEGG:BLD_1065 NR:ns ## KEGG: BLD_1065 # Name: not_defined # Def: hypothetical membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 559 24 582 604 1068 99.0 0 MHDVATKWKDVATFQWEPFGENNQVPIGTVTGTVHFPKGVTASNSWTWLHTEQTSETGRT KDGSFTFTVNDVKSGEYLDVVAAFDAAKAGDMARVETDDHLQELKEDEADDERFWRNLER QRATRRLNNWMTTISAGLIFGIIGVVAALRSSGRSRYRGSIEYWRDRPELSPASAAKLID IVTSGDKPDISERQLVATLLSLAVKKVIAVFPGSADLYIGVDLKQVSPVELSQRIGSDPY KRNNARTNSTIVMLWQSDYGVSEGFDESVFVESVFDGSGSGGSGSAASSVSDAHQPDLSA SERALLHLLTVISERVGRTAFDMDDIKDACKDWKDGYKELEKFTNACKTEFAAADIAPKT ENGWLIPGAITVLIGGASIFINGLAGYLVAGALIGIPLMTVGIFCFLMGNSYVLTDHGQQ MAGQCLGLKRYMQGFSNFKYRGVADLTLWDWYMVYAAAFGISDRVMRELAMAYPQVSDPE WLDANASDTVFYWNYRPYDWYGLRFYNGSAFADSVADSGLAGAVPAFGGTSFAAGFSDLG TQLSYGFADITATINAASPSGGSGGFGGSSGGSGGGSFGGR >gi|316916494|gb|ADCN01000012.1| GENE 70 67882 - 68154 212 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDSGCSADRSVASSETHSQQYQCGNDDGRRPPLSNLIGQGDQQAGHQTFPVLPVLSRTVV MVVAYHENLLLNFETSLCRLTQRHRAKVAR >gi|316916494|gb|ADCN01000012.1| GENE 71 68335 - 69198 1425 287 aa, chain + ## HITS:1 COG:all2316 KEGG:ns NR:ns ## COG: all2316 COG0667 # Protein_GI_number: 17229808 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Nostoc sp. PCC 7120 # 13 286 14 284 284 168 37.0 1e-41 MALFRNLGPFSTTAIGHGEMPLTIENNRGHEVGIETLHASLDAGCRHIDTAWAYYCSGGE EQTGEKLVREALETWKGPKDEVLVATKVGHFRNFTDGRPTWDVDGRPENLIRRGKESALA LGVDTIDLLYFHRPDPKVPYNESVEAIKQLVDEGVAQEAGISNASIEQIDIARGILGDKL VAVQNQYSPIHLETQDTLDYCAKVGLAFVCWSPLGGYRHPYDETKFDPFREVAAAHGVSY QQVVLAWELAKGDHVFVIPGAHRPETILDSLKADQLELTPEELAKLG >gi|316916494|gb|ADCN01000012.1| GENE 72 69290 - 70345 1006 351 aa, chain + ## HITS:1 COG:Cgl1931 KEGG:ns NR:ns ## COG: Cgl1931 COG1957 # Protein_GI_number: 19553181 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Corynebacterium glutamicum # 1 349 1 313 316 265 47.0 1e-70 MRKKLILDLDTGIDDALAIAYALGSADEIDLIGITATYGNVAVPLAARNALAVVHLFGRD DVPVYPGVDHPIAPATLPKMRGTTPDERTQAYARWQNGGADGWQTDASWAPTPGSVAVHH PNGIGGAIIPDSPRAPEAPGSAVDFIIAAAHEYGPDLTIVPTGAMTTMATVFRNAPDLKD SGVNVTLMGGALTLPGNVSPAAEANISQDPESADYLFKCGARTTMIGLDVTHQTALAREK AHEWASLGTPAGDFLVTMTDYYIDFYLKNQPEIHGCGLHDPLAVAAALDPSLVTTFGFNL QVDLEGPFRGRTIGDRSRLQDFDKHTQVALGVDVSEFLDRFMARVTAAARG >gi|316916494|gb|ADCN01000012.1| GENE 73 70599 - 71585 428 328 aa, chain + ## HITS:1 COG:SPy1293 KEGG:ns NR:ns ## COG: SPy1293 COG1609 # Protein_GI_number: 15675246 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 1 184 1 191 339 95 34.0 1e-19 MVTARDVAKRAGVSQATVSYVMSGSRPISEATKKRVRKAMDELGYVPNINARSLAGGKVG VIGVLVHMDENTDLAELRPFLVVIMEEARKRGSSVMLVPADEGIEGLCRMVRQGVVDGVL VFDVEWHDERLPEIARLDIPVVLVGTPENAHGLPCVDVDYRRVAQMAVNRLAERGAQRMV LVGDWGRSLDRYAFAKFFASESRVVAQVLGMEYEIFIPREKGWRGIWAMKDELKRMAQCH GGIAVRTPQVLDSLLQLCVEMQIQPGRDFSLVAVYVDGHDEELRVPVDNVDPVPQSVAKA AMGLLFDRIDGHKTGERLLVSPHITIRS >gi|316916494|gb|ADCN01000012.1| GENE 74 71736 - 73001 1952 421 aa, chain + ## HITS:1 COG:BH3690 KEGG:ns NR:ns ## COG: BH3690 COG1653 # Protein_GI_number: 15616252 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 54 349 63 346 420 88 27.0 2e-17 MRGNTKKFALKSAVAVAATAAMVVPMAACGSGTAGGGKTKISFYSYFKDNQIGEVVKGFE KKNPDITLDVQYGQDPAQYISTLQTRLAGGKAPTIFNLTMDNRTDVMKSGAALDISGEDF LYGIDDTNFALFQQDGKTYGMPVSAWVGVFFYNKDILKKAGCDKFPKTWDEFIEMGKKIN SNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFTKDWTPVFKKWEA AAKAGVIPQKSVGLSADQIKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKED GQWINGGPDQGFAIASKASDKEQAAAKKFLAYLNSEEGLEAFTSAAGTLSLSSKYNAEPP AELKDVVDNYFKQNKFYWVNWPKSPTVMSTEDIAQQQKIVQGQISAKEAAKALDAKWATL K >gi|316916494|gb|ADCN01000012.1| GENE 75 73116 - 74048 1065 310 aa, chain + ## HITS:1 COG:BS_yurN KEGG:ns NR:ns ## COG: BS_yurN COG1175 # Protein_GI_number: 16080312 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus subtilis # 28 296 10 277 292 151 33.0 2e-36 MTAATIGHASKPKSKRASSLWAENLSSFWFLLPIIIIFFILTVVPLAQSFFYSLTDYDGY SENFSFVAFSNYVAIFKDPSLLSALGFTLLYAFGTTLLVTCFAIPLAVTLNKAMWGRSFA RSLFFFLGVPAQAIIGLIWQYIFSPLGSGVMNKVIAVFGIPNIPWLADDNWARFCVIFVA VWMQVGWHATLYLAYLQTIPADLYEQARVDGANSRQQFFHITLPQLIPGIVVSMFLLMTG GLKIYDLPYTLTGGGPGYATNTLSQAIILKGIGQSQYGLGSALSVCFTIACILVIAAQTG IANAVEKRFQ >gi|316916494|gb|ADCN01000012.1| GENE 76 74045 - 74878 1015 277 aa, chain + ## HITS:1 COG:BH3682 KEGG:ns NR:ns ## COG: BH3682 COG0395 # Protein_GI_number: 15616244 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 3 277 18 293 293 141 32.0 1e-33 MTPSQRELVRKIFRTIVVLGLALICAVPLYYVIVSSFKTSIDMIKNPLGLPEQWTLENYK EAFADGTIIRAFVNTLIVTVVAVLLQVLVGSMAAFGVVYKKSKFTAIVGGVLMVTFAIPV QATMLPLYRMESETGLVDSLLGLIVLYMGSCVFCYFLIVGYMKSLPQELFEAAKIDGAGP WRIYSRIVLPLITPILTTVVVFQTMGTWNDFLLPSVFLSSTDNQTVVLQVYNAVQQFSTN WPLFMTITVLALVPVFIFFCFCQKWIVSGLVAGSVKG >gi|316916494|gb|ADCN01000012.1| GENE 77 74886 - 77024 1810 712 aa, chain + ## HITS:1 COG:no KEGG:BLD_1057 NR:ns ## KEGG: BLD_1057 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 5 712 1 708 708 1365 99.0 0 MRSVMSDVQNVAQQAAIERAAAEAGASTDFSQFAGSSLPFGNGQVLLDQSTGAPIAFVNE DNPNRHYLLDDSVSWHTSDQYWGSGYVVTTSGGSQWNTPQVYGITNGLEQQTFALGGAGL ALDVTRSSGERLTERYEWRNVSNQPVTITGLGIQTPLNDRYPGARKSLRECVHAHIFAGG DWSWVLAEPMDGRGARLGLIVTEGAINAYAIQSRNQVTYSDIRGHIVLQVTDYALNPDAF GGQPTITLEPGASYALTWELGWYADEDAFLAATIAPASFSSLSATVGGHIDIATNRAVTA LDDGLTVERTVSGVRLTAEQAGTYQLQLVDGDHRAHTEVLFHKTLRDTVNDRARYILEHQ VAYERVGALAGAIVATDTRTGQHVLDSSWDDWSDGSERIAMPVLLQRALNLGLLDESLRE PAQRAADAWRTFAESALIDASGAVRRGSGLPESKFGGRIYDCPWIISFFTEHYLATKDAH DLDMAVNIADRAAEIGGEHFLSIEFAESSAALARVLKQTGRTEETQRLLDRVVVSADYFL GLGIDLPYHEVSYEQSITAPLVSLLLEAHRITGRAEYLDGAVERLDWLLAFSGPQPDSRL YGVAIRHWDGYWFGINRQFGDVFPHYWSTLTAEVLARLPQERRSARTDDLAKAIFEANMA NYGADGSATCAYVFPSNVDGRSMHQADPLANDQDWHLNIWMRMIAEEGFSAL >gi|316916494|gb|ADCN01000012.1| GENE 78 77392 - 78609 332 405 aa, chain - ## HITS:1 COG:AGpT281 KEGG:ns NR:ns ## COG: AGpT281 COG3550 # Protein_GI_number: 16119973 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 192 304 4 106 106 69 35.0 9e-12 MAKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFF FSGLGPFSDSAPDRWGRKVFSRSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDE GVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLGGARPKASVSDRNALWLAKFP KPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVE RMERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRN HGYLRKNNSWQLAPAFDMNPEPFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRK YADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKAVHALQ >gi|316916494|gb|ADCN01000012.1| GENE 79 78617 - 78910 280 97 aa, chain - ## HITS:1 COG:no KEGG:BLD_1055 NR:ns ## KEGG: BLD_1055 # Name: not_defined # Def: Xre-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 97 1 97 97 160 100.0 2e-38 MKYVPTTTKRDLRILGEQFSRQRKLLMLTVADVAHRSGVSPTTVSNLEQGKAVRSDSLLT IARVLQLADTLVAACDPYSTDLGRLRAGQQLPKRVRR >gi|316916494|gb|ADCN01000012.1| GENE 80 79104 - 79718 949 204 aa, chain - ## HITS:1 COG:Cgl2003 KEGG:ns NR:ns ## COG: Cgl2003 COG0806 # Protein_GI_number: 19553253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Corynebacterium glutamicum # 16 201 7 169 171 84 31.0 9e-17 MAQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYI VEGSRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARL VEGNGLGLPAGQVVGKVADVIDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEE LVPDIDLEEQYLTLDPPGGLIPGL >gi|316916494|gb|ADCN01000012.1| GENE 81 79741 - 79974 338 77 aa, chain - ## HITS:1 COG:MT2976 KEGG:ns NR:ns ## COG: MT2976 COG1837 # Protein_GI_number: 15842451 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein (contains KH domain) # Organism: Mycobacterium tuberculosis CDC1551 # 1 74 4 77 80 65 48.0 3e-11 MLAQAVEHLIKNIVDFPDDVSVKSHENARGELLRVRVNPEDIGRVIGRGGRTANAIRTVI QALSDHKVRVDIMDVRR >gi|316916494|gb|ADCN01000012.1| GENE 82 79995 - 80456 761 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23464906|ref|NP_695509.1| 30S ribosomal protein S16 [Bifidobacterium longum NCC2705] # 1 153 1 153 153 297 99 2e-79 MATKIRLKRQGKKFYAFYRVVVVDSRKKRDGKVIEEIGTYNPNTQPSTIQIKSDRAQYWL GVGAQPSEPVFKLLNITGDWQKYKGLEGAEGTLKTVEAGPDAEARIAAVEDQAQKLKAAK SEAAAKAKAEAEAAAAAEEAPAEEAAEEAPAEA >gi|316916494|gb|ADCN01000012.1| GENE 83 80689 - 81798 905 369 aa, chain - ## HITS:1 COG:no KEGG:BL0304 NR:ns ## KEGG: BL0304 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 369 1 369 369 698 99.0 0 MTTILSAVAIIALLWTTLSALPAGLEARMPLPYMIALTPLLWVPLMILAAVAAWQHEWTA MSLLIVVALIASSQRINYWGTSIDPAGKRKESHRETARETTSPTLSKSHNSNTSGTSNTS KEGPETISDGHRETTRETLSPQFSVMTMNCRYGRADAAEIIRNIRERNISVLALQEVTDD LITRLTEADINELLPYHQFGDAKETDNGGFNVIYSRYEPSAAVPNVVSIPAADVPAITLK TSGNRTVTLCSAHPKSPMRGCADWSAGILGLRELARAKSVSNRNIVVVMGDLNSSTDHPS FRALLKSGFKDASLIQAAGPNLTFPSWLKWPRIELDHVLFTPGLKPSGVKSFEVEGTDHL ALTATLALR >gi|316916494|gb|ADCN01000012.1| GENE 84 81875 - 83527 2506 550 aa, chain - ## HITS:1 COG:Cgl2009 KEGG:ns NR:ns ## COG: Cgl2009 COG0541 # Protein_GI_number: 19553259 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Corynebacterium glutamicum # 4 481 2 475 547 511 60.0 1e-144 MAAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRER ALGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNFAKNPPTIIMLAGLQGAGKTTLA GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG QTSGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDIRDAVRPNEILFVID AMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDF EVFHPDRMASRILDMGDIMTLIEQAQKQFDEEEARKAAEKISEGSFGLDDFLDQLQQVRK LGSMKSLLGMIPGMAQHRKELEQFDEREIDRTEAIIRSMTPAERRDPSIINGSRRARIAY GSGVTVSQVNALLQRFEQAAKMMKRMSNRGGMGGGIPGFGGPAMGGGKKKGKNKKKGGKS GNPMKREAEEKALRDKLAGKSSGSTGGSAFAKKPQNPALPAGLEQMMGNVDGGTELPPNL GGGLGGLFGR >gi|316916494|gb|ADCN01000012.1| GENE 85 83832 - 84740 1220 302 aa, chain + ## HITS:1 COG:no KEGG:BL0302 NR:ns ## KEGG: BL0302 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 302 41 342 342 582 100.0 1e-165 MPTQKLLERKALIVGIVINVLQVLAGMAVFFMTGLKAMFLDFSFTAISVLSGMVAVYLSS RTVRTTERFPNGMFALEPIYAICKAIFTMSLLVYSLIDVCRVAYDYFVFGSGERIETGPV VIYEILTVIVCFSLYTYYRRSNRSIGDSSTMLTAECKSTLVDGSMSFGIGVVAIFLMLLP AGGPLDFLHYTGDFFITVALVALTIKEPFSVLKEAFVELVGGVHDDDETNAYVEAEAQRH LPANTDYEQTLIFKTGMNYTVDVYLSGIGETIDVADLIECKRSLEKELSKRLHIVDVDFV FD >gi|316916494|gb|ADCN01000012.1| GENE 86 84759 - 86408 2137 549 aa, chain - ## HITS:1 COG:Cgl2589 KEGG:ns NR:ns ## COG: Cgl2589 COG0215 # Protein_GI_number: 19553839 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 31 549 3 460 460 410 46.0 1e-114 MGNSQEPQDFNISVMPSSLTPVHVAKAAEGLNLYDTASHQVSHFVPLKPGEVGIYVCGAT VQSSPHIGHIRAAVAFDIVRRWFLKLGYKVTFVRNVTDIDDKILVKAAAAGQRWWARAYY YEREFTEAYNTLGVLPPTVEPRATGHMSDMIDLIQRILDNGHGYVVTDADGKPTGNVYFD VASWPHYGELTHQKQTSEVDEAAAVADRMGPSVDATGADKYNPVDPADASPDKHDPRDFA LWKAPKDTDPEDARWSTPFGVGRPGWHIECSAMSHRYLGDGFDIHGGGLDLRFPHHENEM AQTRAAGYPSAARWMHSAWVTAKGEKMSKSLGTGLSVPSVLAEHSAWVVRYALGSVQYRS MLEWSDQALVEAQAAYDRVSNFIERAGVALGGQPSREEVTAVSADDLPADFVAAMNDDVN VSGATAAIFTAIRSGNTLLSQLADRADSETAKAEVREALLAVRAMLDTLGLDPLAEPWVS AGAAGGAADGTAESPEHAALEALIAEQLNARAEARKAKDFAKADQIRDALTEAGIAIEDG PQGSTWSLK >gi|316916494|gb|ADCN01000012.1| GENE 87 86474 - 86572 82 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLAVSAAVKDVFSRDCCPASHPSVTSFGPHL >gi|316916494|gb|ADCN01000012.1| GENE 88 86627 - 87355 790 242 aa, chain + ## HITS:1 COG:SSO1857 KEGG:ns NR:ns ## COG: SSO1857 COG0518 # Protein_GI_number: 15898650 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Sulfolobus solfataricus # 49 188 37 175 209 107 41.0 2e-23 MATPQVLILQHVPWERPGRILSNLEDIGLETVTMNIVDKKKPDLPDFGELAGVVIMGGPM GALDYDKYPGLKAEAKLARAAVASGKPILGVCLGHQIIATALGAQLRKGDAPEIGFAPIK RVDKHDFFSMWDKQLTVLHWHNDVVGLPAEGQLLSRSSSTKVQAFRLGSALGMQFHLEVC GSLLDEWLDEPSMVKDLKAAGGSKSQLREQFAQYDQLLQPLAEQVFSGFAARCNSYAQTL NK >gi|316916494|gb|ADCN01000012.1| GENE 89 87403 - 89679 2856 758 aa, chain + ## HITS:1 COG:Rv1668c KEGG:ns NR:ns ## COG: Rv1668c COG0488 # Protein_GI_number: 15608806 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis H37Rv # 6 325 5 323 372 339 53.0 9e-93 MPTYDIGLEHVSLAFATKTIFTDVTQGVFEGDRIGIVGKNGDGKSTLLHLFRGAQEPDSG RVTKRGGLTFGMLDQRDPLDDNATIREAALEGRADYEWASDNTSREIVEALLGGMSLDAK VGSLSGGQRRRADLARLLLKDWDILALDEPTNHLDVVTIHWLAEHLKNRWSKGQGALLLV THDRWFLDEVCESMWEVHDGVIEPFEGGYSAYMLQRVERDRQADVRETKRRNLARKELAW LSRGARARSTKQKFHVKAARELIADVPPMRNTLELKQMATSRLGKQVVDLVDVTQIFEKP QGMADIDPDVAALSASASRVDVVNAMYAEPQLHGSVEVAVTDMTDPRLVDAGVPEAVESA EEARKKAEAESGNPQLADDREVRRMNTGGETIGGGTAATDSDDDTAAAGVTSAARKVTVS GREILDDVTWLIGPGDRFGIVGANGAGKSTLLKLIDGTLTPTAGHVNIGKTVKFAVLSQR LDELEKLGKYKIKEVLSRYKPSYIVDGKEVTPGQLMERLGFESAQLMTPIRDLSGGQKRR MQLLLILLDEPNVLIMDEPGNDLDTDMLAVMEDLLDTWPGTLIVVSHDRYLLERVTDQQF ALIGGKVRHLPGGVQDYLDMVEAIKNGKGLPADTPGFAGTGSSSAKSGKGKAAAVNAAAS LPQSASRIAPSSEGANNGEDSTSKLTGKAFHEASKRVNAIERKLAKLEEQKADLEAQMAA HDPSDYEGLNKLNEQLTAVNTESDDLEAEWLELSEQLE >gi|316916494|gb|ADCN01000012.1| GENE 90 89732 - 90151 298 139 aa, chain - ## HITS:1 COG:XF1589 KEGG:ns NR:ns ## COG: XF1589 COG1487 # Protein_GI_number: 15838190 # Func_class: R General function prediction only # Function: Predicted nucleic acid-binding protein, contains PIN domain # Organism: Xylella fastidiosa 9a5c # 1 139 1 139 142 99 37.0 2e-21 MIILDTNVISEIIKKQPDEHVANWLRNQDTSNLATTAITVAELLAGICRMPEGKRRKYTD TTVKLALMTLEDRTFAFDTQAAADYAHILVEREHRGTPTSIQDAMIAAIACSWDAAIATR NIKDFEGTDVELINPWEFA >gi|316916494|gb|ADCN01000012.1| GENE 91 90161 - 90439 392 92 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0372 NR:ns ## KEGG: BLJ_0372 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 92 1 92 92 158 98.0 7e-38 MATLTIRKIPDEQIQQLKEVAEKNNRSMESQVRSILEEWLAGTVAHEITRKTNFYDEIRE FMKNLDFEGLDKGELPLSERNSADSRPPVSFE >gi|316916494|gb|ADCN01000012.1| GENE 92 90595 - 91149 1071 184 aa, chain - ## HITS:1 COG:MT3082 KEGG:ns NR:ns ## COG: MT3082 COG0440 # Protein_GI_number: 15842560 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Mycobacterium tuberculosis CDC1551 # 12 172 4 164 168 169 58.0 2e-42 MANYPASQPGSQRHTLSVLVENRPGVLARIAGLFARRAFNINSLSVSPTERPDISRVTVT ADVEAVPLEQIIKQLNKLLHVLKIVELDPNSTVERELVLIKVAANESNRSDVLEIVRLFR VRVVDVNPESLTIEATGAEGKIDALLGLLEHYGVIELVRSGAVAVTRGPRALSEKVVGSE VTGR >gi|316916494|gb|ADCN01000012.1| GENE 93 91166 - 93133 2836 655 aa, chain - ## HITS:1 COG:Rv3003c KEGG:ns NR:ns ## COG: Rv3003c COG0028 # Protein_GI_number: 15610140 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Mycobacterium tuberculosis H37Rv # 29 624 36 609 618 668 57.0 0 MALPTPLQAFSGVPKINTAPDKQTIVDGEKMTGAQALIRSLEDLGVEDVFGIPGGAILPV YHEIKDNTKFRFVLMRHEQAAGHAAEGYALATGKVGVCIVTSGPGATNVVTAIADANMDS VPMVVITGQVGVQAIGTDAFQEADIVGITYPVSKHSFLVTRAQDIPRVLSEAYYIANTGR PGPVVVDLTKTAQTGDMYYSWPQRMILPGYNPTTKAHGRVLSDAAKLFSQSYRPVLYVGG GAARSNAGAQVKALADLTGAPVVTTLPARGIIPDSDPKNLGMLGMHGTIAATGAVQRADL LVAIGARFDDRVTGKLDAFAPTARVIHIDIDPAEIGKNRQPDVPIVGDVATVLDDLIPEI QRTQAIQGKPNLAPWWKAIDGWREEYPMTWDEPTDGSLAPQWVIKKLSEMADPSTIWVTG VGQHQMWASQFIDFENQHAWISSGGLGTMGYGLPAAIGASVGSAREFEGKKPVWLIDGDG SFQMTSEELAAAFLDHAPVKIAILNNSVYGMVRQWQTLFYEHHYSQTNLLDGEAHGVDGE SALADGDAPLEVPDFIKLAEAYGCVGIRAFTEEEAIAAIEKANQINDRPVLIDFRVWKDA MVWPMVAAGAPNDEVTYKPGIKPLAGGTPAPGTGPDEHATGVFEHETAAATASEH >gi|316916494|gb|ADCN01000012.1| GENE 94 93294 - 94022 998 242 aa, chain - ## HITS:1 COG:ML1659 KEGG:ns NR:ns ## COG: ML1659 COG0571 # Protein_GI_number: 15827877 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Mycobacterium leprae # 11 235 4 228 238 162 47.0 4e-40 MSNETPQQPTPANELLEALGTTLSPDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLEL VSTETLFTIHPDMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKN SILCDIVESLIGATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGK EEPVYHMEVSGPEYAQIFTARVSLGENGDIIGIGKGSSKRKAQLAAAEAGWKSLDSFKTR TK >gi|316916494|gb|ADCN01000012.1| GENE 95 94170 - 94364 357 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23335838|ref|ZP_00121070.1| COG0333: Ribosomal protein L32 [Bifidobacterium longum DJO10A] # 1 64 1 64 64 142 100 1e-32 MALPKYKTSRANTHSRRANWKATAAATVNCPNCGAPALPHMACPSCGNYRGRTYRSAIQP AHTK >gi|316916494|gb|ADCN01000012.1| GENE 96 94453 - 95082 789 209 aa, chain - ## HITS:1 COG:Rv2926c KEGG:ns NR:ns ## COG: Rv2926c COG1399 # Protein_GI_number: 15610063 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Mycobacterium tuberculosis H37Rv # 7 192 27 192 207 93 31.0 2e-19 MARVEDSPWAIPVAQIASRAGQSKPIDADFPAPSGIGDSIVGIKEGEPVHVSGQFDSIVD GLIFTGRLVAPFVSECTRCLKPIDEDWPVDVTVFFPYESGQDKANGKGGKSKKDDEIDII AGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCRPDCRGLCSQCGADLNEDPDH HHDVTDIRFAGLAGLKAQLEAEQNGEQAE >gi|316916494|gb|ADCN01000012.1| GENE 97 95171 - 96061 964 296 aa, chain - ## HITS:1 COG:no KEGG:BLD_1038 NR:ns ## KEGG: BLD_1038 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 296 1 296 296 371 100.0 1e-101 MTMSDDHPTGYVDLTKPNADAASSTPEPSAPEPPASTQAAPAPTEEADVLAGSPPAAPTP TPAQMQAKAQAQAAQQTRAQAQTAQAAGIRPSFMNEMPDLRETTDDDPATVKSHEEFTTV YDIIDQLEAALGEAKSSIFAPGMVKVDRDEFTDQLSELKKMLPVQLERASALMREAERRL ESAQTQSNAIVASAQSRAANMIRDANEQAQFLAGQENVTELARQKARAILDQAQTKADHL TQGADQYCTTVMEGLSQQLGKLSQDVQAGLNVLEERQRAAREQMPHLTLNDYPEAQ >gi|316916494|gb|ADCN01000012.1| GENE 98 96069 - 96569 338 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 5 150 7 151 164 134 49 2e-30 MTIAVCPGSYDPVTAGHLDVIERSARFFDEVHVVVAVNAAKTPMFSEATRVDVIRRALDK AGCKNVTVSSTDGLITDYCKKVGATVIIKGLRQNGDYEAELGMALVNRKLAGIETLFLPA DPILEHISSSIVKDVARHGGDVTGMVPDCVVPMLADALAEERQRKD >gi|316916494|gb|ADCN01000012.1| GENE 99 96843 - 97136 362 97 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0380 NR:ns ## KEGG: BLJ_0380 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 97 1 97 97 182 100.0 4e-45 MTFAEMFVDDAEPLRNPDQGAGTSVLERPETKESPVRDDGGDADRFAHYVSKDRIAESRA TGRPVVALCGKVWVPKHDPSKYPVCPDCKRIYEEMTR >gi|316916494|gb|ADCN01000012.1| GENE 100 97178 - 98188 1654 336 aa, chain - ## HITS:1 COG:YPO2980 KEGG:ns NR:ns ## COG: YPO2980 COG0667 # Protein_GI_number: 16123161 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Yersinia pestis # 7 335 2 329 329 377 57.0 1e-104 MFEPTAIYAPNPHRYDTMTYNRAGTSGLKLPAVSLGFWHNFGDITPFDQMKSLVFTAFDN GITHFDLANNYGPEPGQAEKNCGLLLAKYFKHHRDELVISTKAGYEMWTGPYGDLGSRKY LLASLDQSLERLGLDYVDIFYHHHPDPETPLEETMGALAQAVNSGKALYVGLSNYDGPTM EKAAAILAELHVPFIINQNKYNILDRTVEKNGLKETAFKLGKGLITFCPLAQGLLTNRYL NGIPADSRMAHDPRFLNDSALTEKLHKQVMDLNNLAAERGQTLAEMSLAWLLHDGKVTSV LTGASKPQQILDNIGALKNTHFSDEELKLIDEISAR >gi|316916494|gb|ADCN01000012.1| GENE 101 98299 - 98400 70 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELRGHLTNGVGHHDSLLRQHAEASQPFAFKFT >gi|316916494|gb|ADCN01000012.1| GENE 102 98362 - 98790 596 142 aa, chain + ## HITS:1 COG:CAP0107 KEGG:ns NR:ns ## COG: CAP0107 COG0789 # Protein_GI_number: 15004810 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 114 1 114 152 72 34.0 2e-13 MSYTIRQVATQFHMQPSTLRYYEDQGLLTNVERTETGQRIYEDCHIDRLRAICCFKNAGM TIDDLKKFFVYESNEPEHIDEILDLLESRRESLDEQRRALNEAAMHVQRKLHYYGDIKRA IDAGEDWPDWREYKNRAYSIEC >gi|316916494|gb|ADCN01000012.1| GENE 103 98890 - 99516 692 208 aa, chain - ## HITS:1 COG:no KEGG:BLD_1033 NR:ns ## KEGG: BLD_1033 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 208 1 208 208 366 99.0 1e-100 MRFIVALWRFAIAGFCFVGTYEAWSKPQFWVYFTFQTGFVLGIVMLWSGAATLLKGIQPP AWLKGCLTVYAIVTALVAFFLMPPDDPAYVPQVIGIMTNTMLHKIAPIMAVIDFVLFDPH RRFRWHYMFSWLAYFPAYLVFVLARAAIWPGSGPAAGGSPYPYDFINLDALDWQGFGISC GKLAIAFFVISLVVWLLDRALPSKALLG >gi|316916494|gb|ADCN01000012.1| GENE 104 99747 - 101069 2024 440 aa, chain + ## HITS:1 COG:Cgl2467 KEGG:ns NR:ns ## COG: Cgl2467 COG1488 # Protein_GI_number: 19553717 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Corynebacterium glutamicum # 5 435 13 437 446 365 49.0 1e-100 MVDYSPALMTDMYEYTMLDAALKDGTADRKCVFEVFTRHLPEGRRYGVVAGTGRILDALE HFHLDEADLKFLADRHVVSPETIKWLENFHFSGTIRGYREGEMFFPNSPILQVEGTFGEC TLLETLILSALNYDSAVASAASRMASAAKDRPCMDMGGRRTNEWAAVAAARAAVVGGFKG TANLLAAQLYGLKAIGTAAHCFTLVHDSERDAFESQIEALGKNTTLLVDTYNIEEAVKTA VEVAGPELGGVRIDSGDLAAMAQRVRNQLDALGATNTTITVTNDLDEYALAALQTAPVDS YGVGTMLVTGSGAPTCAMVYKLTEREGTDGTMVPVMKKSKDKATVPGRKLAFRSYEYALA EAEHVISGSEEKLAGFTPEPTWKNLLVDFVDHGHIDAQWQGHDAIMAAHDYRAKALSELP ITAQSLMKGEPVIPTETQVL >gi|316916494|gb|ADCN01000012.1| GENE 105 101352 - 102128 954 258 aa, chain + ## HITS:1 COG:Cgl2451 KEGG:ns NR:ns ## COG: Cgl2451 COG0689 # Protein_GI_number: 19553701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Corynebacterium glutamicum # 11 257 14 258 258 276 59.0 4e-74 MLGRMVEIKDMLGNHQIIRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATF TPGVPRWRKDSGLGWVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVID MKALGENQIQLDCDVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSA VSVGVINGTPMLDLPYIEDSQAMTDMNVAMTGSGTFIEIQGTAEHRPFNRAELGTLLDLA EKGNKELQAAQRAALSLD >gi|316916494|gb|ADCN01000012.1| GENE 106 102172 - 102930 352 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 1 251 6 204 207 140 37 5e-32 MQIVVATHNEGKLVEIRRILEEDLGADAENIELVSAGSLHLPDPVETGVTFQENALLKAR AVAIRTGLPAVADDSGLIVDVMGNAPGILSARWAGAHGHDKANNALLLAQIEDIPDDKRT ARFRCAAALVVPDTETGADVTGGVAADGITVHTTAADGSPAPVHARYAIKSETVELGDMP GRIIREARGVHGFGYDPLFVPDDQPAGRVSTEPDHEGEPLTSAEMTPAEKNAISHRGKAL KALVPAIEALLH >gi|316916494|gb|ADCN01000012.1| GENE 107 103377 - 104645 1170 422 aa, chain + ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 6 422 3 410 410 216 33.0 5e-56 MRDFVLVKLTDEEFDDFSARHPQGNFQQTSAMGRLRTAQGIDVEYLALKEGEKIVAAALF ETHRSRFSTFAVIHDGPMCDYHDTEALTFFMDALKRHAKAKGASQLEITPESPYRLRDTN GASLPDDQNGAPDNKLIEQLEAIGFTHGGFTVGYTAVPRWRYLKDLTGITDEKSLLKSYD KRTQWSVKRAQSMGVHVRELSDDELGVFARIEQQTAERRSFEYRGEAYFHRFKEAFGSKA HFMVAEIHIDEYVADMTSKREALSAKVAALTAKNAEHPTTKTERQLGEETRNLAAAEKRL NEAAEFAKDGDVLPAAASLFVEHPREVIYLFSGSVEQYKPFYASALIQHDAMLHFCVEHG LSRYNFYGIDGVFDDPDDEGRGVLEFKQGFNGYVEELPGEFVLPVKPVAYAMKQFAHKLL SR >gi|316916494|gb|ADCN01000012.1| GENE 108 104719 - 106029 1631 436 aa, chain + ## HITS:1 COG:SPy0615 KEGG:ns NR:ns ## COG: SPy0615 COG2348 # Protein_GI_number: 15674693 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pyogenes M1 GAS # 15 436 5 410 411 176 28.0 7e-44 MTQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKL IAACYVVYTRSRFGLEGSVWCGPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVY RLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVNRWNFVKGLDGIHNEKELLAS FSKYRRKNIRIAQDSGLRVRRLERGELSTFVKLCDMSAARQGFKSRDLAYYERLFDTFGD LIEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRTQQQPEGTAKKGASDPATLEKR IATADKKIAALEKTIGEVNGIIASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPS SLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQFKTRFGGFVEELPGKFTLPVD GLRFGVSEAAHKLLHR >gi|316916494|gb|ADCN01000012.1| GENE 109 106079 - 107359 1227 426 aa, chain + ## HITS:1 COG:SP0616 KEGG:ns NR:ns ## COG: SP0616 COG2348 # Protein_GI_number: 15900524 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Streptococcus pneumoniae TIGR4 # 17 426 6 410 410 186 29.0 9e-47 MSATANRTDTTYTFGVITPEELDRLSEATSQGSFQQWSGQVRLAKIRGHEAECVGVCDAS GNLVTGCVILYLNGRFGADGSVYFGPIGISDDPALLRAITEAIRESARRHHAVSVACWPN VAYRLYSSNGQPDGEPNDALLAGFADAGWTHGGFHTGYDVVCQWMYVKDLTGITNGKELL ASFGKRAQWSVKRAQSMGVHVREIGPDEFDVFADIERRTGERRGFATRGADYFRQFKQAY GADAHFMLAEIHIAEYVADMTAKREALQAKVARLQAKYDERPTTRIERQLGEESRNLAAA DKRLAEVEGYARKGDVLPAAASMFVSHPNEVVYQYSGSLEEYKPFYASALIQYEAMLHLC VEQGVPRYNFYGISGVFDDPNDEGRGVLEFKQGFNGYVEQMVGKFTLPVDKFRFGVSNLA HKLLRR >gi|316916494|gb|ADCN01000012.1| GENE 110 107442 - 108443 1390 333 aa, chain - ## HITS:1 COG:L181807 KEGG:ns NR:ns ## COG: L181807 COG0679 # Protein_GI_number: 15673902 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Lactococcus lactis # 68 326 2 233 238 90 26.0 6e-18 MSAILTPVGLLLIILAGYLFKRFGLFGQKDYRVLQTAEFNIVLPGAIVYSFATNPHDISL LLISVFAFLFAFIPVVFIFLATRKRNVTDRAFLMLNGAGFNLGCFSFPVVQSFWGAGAVV PAAMFDIGNCVMVAAGTNVLTQQLLHIQPGKTLAEQHAGSAPTLPYEKPKDRDAKRLARR ALLRTIGKSFFGSVPFDTYLLMIVLTVANVKIPDWIASITQPLSGANALVSMLMVGMLMD LPQSKHDVKEVMAVIAWRIPFSVAFALIAWLLLPFSASIRAVMVICALAPIAIFSTLFTD KVLGNAKLAGFSLAITAMISLVMMAVAHALMGV >gi|316916494|gb|ADCN01000012.1| GENE 111 109165 - 110862 3037 565 aa, chain + ## HITS:1 COG:MT0972 KEGG:ns NR:ns ## COG: MT0972 COG0166 # Protein_GI_number: 15840369 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Mycobacterium tuberculosis CDC1551 # 1 563 1 549 553 642 56.0 0 MAINPPVDATQTPEWAALQKHYDELQVEGVSLKKWFAEDAERVEKLSFDAGDLHFDLSKN LIKPETLQLFANLAKAVKLDERTKAMYTGVHINNTEDRAVLHTALRRPVEDEGKYIVDGQ DTVKDVRETLDKIYAFADDVRSGKWTGVTGRKIETVVNIGIGGSDLGPVMVYEALKPYAD AGISARYISNIDPNDLAEKTKGLDPETTLFIIVSKTFTTLETLTNAREARTWLLEELKAK GAIDGSDEKNAEAIKKHFVAVSTNLEKVAEFGIDPNNAFGFWNWVGGRYSVDSAVGTSLA VVFGPARFEEFLHGFHEIDEYFANTPFEKNVVVLLGMLNVWYRNFFKVASHAVLPYDQYL HRFPAYLQQLTMESNGKSVRWDGTPVTSETGEIFWGEPGTNGQHAFYQLIHQGTQLIPAD FIAFVNTPNPTKDGDQDVHELFLGNYFAQTKALAFGKTADEVRAEGTPEEIVPARVFTGN RPTTSIFGVALTPFAVGELIALYEHITFVEGTVWGLDSYDQWGVELGKQLAKQITPAISQ DDDALAAQDASTQSLIKFYRANREF >gi|316916494|gb|ADCN01000012.1| GENE 112 111170 - 112594 1627 474 aa, chain - ## HITS:1 COG:XF0412_1 KEGG:ns NR:ns ## COG: XF0412_1 COG1116 # Protein_GI_number: 15837014 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Xylella fastidiosa 9a5c # 10 277 2 265 266 281 53.0 2e-75 MTVALETIRSLRAVTPQNTIIEAQHVGQRFTADNGTELTVFDNISFNLYEGEIVAILGRS GAGKSTFLRALAGLVKPTSGTVKYRGKALTGPNPGIALVFQTFALMPWLTVQDNVELGLK ARGVPRAERTKLALDAIDMIGLDGFESAYPKELSGGMRQRVGIARALVLRPDALFMDEPF SALDVLTAENLRQEVLKLWSSEQRSIKSVLMVTHNIEEAVEMADRVVVLGSHPGHLIADV RVDLQRPRDRHSVEFEAMVDRLYAILTGQASQPTQQAEALSPSASLTNASVTDASVTDAS DLQPAKTIEKIKEHPLPNATPGGLAGLLDVVAEHPHGIDLADLASALSFEVDDLFPLVDA GTMLRVIVVRDGHVQITEAGDSWHKADILRAKQVFASLAMEHAPLVHNIEHALRKSAEGK LRGELMLDLLRARYANDEAHQQFAIAVEWGRYGELFDYDADDDLLSLDEANKGE >gi|316916494|gb|ADCN01000012.1| GENE 113 112613 - 114403 1977 596 aa, chain - ## HITS:1 COG:RSc3371 KEGG:ns NR:ns ## COG: RSc3371 COG4986 # Protein_GI_number: 17548088 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type anion transport system, duplicated permease component # Organism: Ralstonia solanacearum # 27 595 11 586 586 436 46.0 1e-122 MTMFSFNRVGARPNASARNPSTAASDRQPFAVRLASDVLVAAGILALFGLIAWILPAIGE PIGPKGVPSQVSTNLADLPYYALRSVFRMFVALFFSLVFTFIYGTAAARCRRLSRVLIPL LDILQSVPILGFLSATITIWMVLFPGSMLGVEAASIFAIFTSQAWNMAFSFTRSLTSEPT ELDEAARSLQLTRWQRFWTLDVPNAMIPLLWNCMMSVGGGWFFLTASEMISVNNRTYALP GIGSFVAQAAAEENLAAICWAIVTMVLVVLLIDVLLWKPLTAWAEKFRITQSESAVRKTS VVLTIIRQSHIDEMVAWLFRPVDDLFDTLTRPLGRTGGRWAADVKSARSRALDVVFTVLV LAACAFGLVQLMLVIHRDAGFGELGQAFVLGMVTFLRVALLTLACSVIWVPIGAMIGMNP RVSRFMQPIVQVLASFPSNFTFPFVTLWFVACSVDINWGSILLMALGTQWYILFNVIAGA SQIPDDLREMTRSFQLGRWQRWRDLILPAVFGSWVTGGITAAGGAWNASIVSEIVSYGRH TLTASGLGAYIAEATESGNTVRTIIGVTVMSVFVVAVNRLFWNPLQRMAERRFALN >gi|316916494|gb|ADCN01000012.1| GENE 114 115147 - 115512 605 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|189439887|ref|YP_001954968.1| 50S ribosomal protein L19 [Bifidobacterium longum DJO10A] # 1 121 1 121 121 237 100 2e-61 MVNAVEAFDAKHMKPAEEIPAFRPGDTVDVNVKIQEGNNSRIQTFTGVVIARKGAGVRET FVVRKISFGTGVERRFPVHSPSIDSIKLVRKGRVRRAKLYYLRALRGKAARIAERRDNSA K >gi|316916494|gb|ADCN01000012.1| GENE 115 115679 - 116518 822 279 aa, chain + ## HITS:1 COG:alr2975 KEGG:ns NR:ns ## COG: alr2975 COG0681 # Protein_GI_number: 17230467 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Nostoc sp. PCC 7120 # 86 261 29 190 190 101 37.0 2e-21 MQDDQDNGEFPISDNPESNQTSYDDEADARDSRTFQVADHGIAPSPVPPAPARPAYVASS AGANAAAASSMDDDHFTLRDFFLWCGVPVLIVLLIRIFAVGFYEIPSRSMMDTMVPGDRV VTSKLTPKIFDLQRGDVVVFKDPNNWLNEEQSSAPGGGYLIKRLIGLPGDVVECKGAGQP VTINGVAINETSYIRPGVDPSAFPFSVTVTEGHVFVMGDNRANSADSRYHQDDGDRGLVP ISDVVGVGIAKYWPLDRLGAIDDHHEVFKDVPDASGSNS >gi|316916494|gb|ADCN01000012.1| GENE 116 116638 - 117477 812 279 aa, chain + ## HITS:1 COG:PA3642 KEGG:ns NR:ns ## COG: PA3642 COG0164 # Protein_GI_number: 15598838 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Pseudomonas aeruginosa # 18 276 12 189 201 92 31.0 7e-19 MITPTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSG RTYLGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALR ALSQVERELGLRLGGGLTAKKAAGESAGKIVEGRPGGSVGESIGNCEGSVRALPKVAGIL DGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN PRYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT >gi|316916494|gb|ADCN01000012.1| GENE 117 117604 - 118719 1098 371 aa, chain + ## HITS:1 COG:lacI KEGG:ns NR:ns ## COG: lacI COG1609 # Protein_GI_number: 16128330 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 9 336 2 307 360 139 32.0 1e-32 MVTSRKPSKRPSMFEVAKLAGVSHQTVSRVINDSPDVSDATRARVQAAIDQLGYRPSNSA RALASRRSRTIGLIAGGLKFFGPISSISSIESMAREHGLFMSVMMVHEALCAQADFDNLC DTFNEQNVDAFIFLTPTDVMFAAACRARVTQPRVIVTATHGQMTVREGLGLISTENKRRT ALVGIDQWGAMAKVVALLGEYGHKSALYFAGPNEWRDAHTRLDAWRKLAASRSIDSQIVR CHTWDASEAYAHMNHLIDEYGRRGAALPTAVVAANDNQAVGIMRALHEHGLRIPQDISVV GFDDMSGVDNMYPPLTTVHPDFEGLGVAAMRETLRLLGEGGEPTFLTTQHGMGLIPAEVR ARRSLGPAPRR >gi|316916494|gb|ADCN01000012.1| GENE 118 118799 - 120520 2535 573 aa, chain + ## HITS:1 COG:CAC1344 KEGG:ns NR:ns ## COG: CAC1344 COG1070 # Protein_GI_number: 15894623 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 41 566 9 531 534 614 57.0 1e-175 MEIVSANTLPKEGDNNAGAPRQRKDMAATDNAAEQVAHIAEKIRAGKTTLGIEFGSTRIK AVLIDDNFQTIASGDYSWASHLEDGLWSYTTEEIWGGLQSAYASMANDVETAYGEKLTHV GHIGFSAMMHGYLAFDEAGELLVPFRTWQNTNTSEAHKKLSELFQYNIPERWSIAHLYQA VLNKEEHVSKVAYFTTLAGYVHWKLTGKKVLGVGDASGMFPIDPTTHTYETAFIEKFDAL PEVAAQPWKLENLLPEPLVAGTPAGELTEEGAKLLDPSGALKPGIVLAPPEGDAGTGMVA TNSVRVRTGNVSAGTSIFAMVVLEHKLKALHPEVDLVTTPAGDLAGMSHANNFTSDLNAW VGLFGQFAKAIGQPVDAGMLYGTLFRAAIADDVDANCGGLLNYPFRSGEFLAGLPEGRPL FARSPEANMTLGNFMRAQLFSAFSPVKIGMDVMTKQERVQVDSLVGHGGIFATPKVAQKI LAAAFNTPIKVMSTAAEGGAWGMAVLANYLWNTNENHSNLADFLDGCVFKDAQSTTEKPV ASDVVGFEDFFARFTKGLPIEHAAIETINLEDK >gi|316916494|gb|ADCN01000012.1| GENE 119 120605 - 121297 1126 230 aa, chain + ## HITS:1 COG:TM0283 KEGG:ns NR:ns ## COG: TM0283 COG0235 # Protein_GI_number: 15643052 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Thermotoga maritima # 19 229 48 253 254 158 41.0 7e-39 MATLADYGPEVRAEVKQVREVVSNLHQQLIKWNLVVWTAGNVSQRLHTADLFVIKPSGLR YEYLTPSSMVVCDLDGNVVDGTEAPSSDTASHAYIYRNMPDVYGVVHTHSTYATAWAATG QNIPCGLTMMGDEFGGPVPVGPFRLIGSEAIGKGVVETLKKYPKSPAVLMQNHGPFTIGK DAEGAVKAAAMTEEVAHTMWAARQLGDIIEIDQADIDKLNDRYQNVYGQH >gi|316916494|gb|ADCN01000012.1| GENE 120 121529 - 123046 2296 505 aa, chain + ## HITS:1 COG:YPO2253 KEGG:ns NR:ns ## COG: YPO2253 COG2160 # Protein_GI_number: 16122477 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Yersinia pestis # 7 502 4 499 500 486 48.0 1e-137 MVMENPFEGKEIWFGVGSQDLYGEEALRQVAIHSAEMVDYLNNTGKIPAKIVLKPTLKSS DGVKEFMVEASANPNVIGVITWCHTFSPAKMWIRGLEVLTKPLLQLATQHHKEIPWETID MDFMNLNQAAHGDREFGYIVSRLGIKRKVVVGHYTDPEVAEKLGTWARACAGWDASNNMK VMRWGDNMRNVAVTEGDKTEAERVFGASINTWAVNELVAAYDAVKDDQVKEIIEDYKAKY DVDPALLDAKYDSLFIAAKEEAAMVNMMRANGCTAGVDNFEDLGALPQLPGVGPQRFPSE YGWGFSAEGDWKTAVLVRIGAVMGYGLEGGASLMEDYSYNFTEGDELDMGSHMLEVSPSI GTIAKPKLEIHPLGIGGKADPVRLVFSGKPAKDAVVVSMSDVRERFRLLMDVVDVVEPQG SLKELPCARAVWEPKPSLKTAVECWITAGGSHHTCMTTSVGREAWEDFARIAGVELAVID ENTTARQFEKELELSEMYHRLNNQH >gi|316916494|gb|ADCN01000012.1| GENE 121 123230 - 123946 350 238 aa, chain - ## HITS:1 COG:FN0505 KEGG:ns NR:ns ## COG: FN0505 COG2071 # Protein_GI_number: 19703840 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Fusobacterium nucleatum # 27 234 33 237 243 140 39.0 2e-33 MTTNRPLIAVTPLMDYGRDSLWMLPGYMEAIMRAGGTPVMLPLTDDTDILAQCAERFDAF LFTGGPDVGPMVGAAASATGRSEVLSPERDRMESILLPAVMAWDKPILGICRGIQFINAA LRGTLWQDLPSQHPSDIEHHMNPPYDAFGHNVSLVPGTPLASLFAGQTEIAVNSYHHQAV REPAAGLEVMAVAPDGVIEALYRPASHFLWAVQWHPEFLYKVDPRSQTIFDAFVGSCR >gi|316916494|gb|ADCN01000012.1| GENE 122 124220 - 125794 1165 524 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0404 NR:ns ## KEGG: BLJ_0404 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 505 242 746 747 979 98.0 0 MNQACVRNDTIDAGNHHGRPQYRSFLRFLTSQERNVIWLLLAIAFLPVDGTTLGLYAPFW SPISPALFAVYCLCNWRQLRIAANRYLPMFLLPVACIILSIPGWLKFGIHLNAAFMSITG LLGVLATLGAIALAFDIKRIPWRTPLRILIASYWVSFGVGVVQWLSIRLHAKPLTDYFSH LMYRQYISDNSVWGGGRPQFLFAEPSYIGMHLFGILLPLMWLMRGRDRIYAKRLRDLIVT YAVGAVLMQAGTRIVIDSVVALLIALVARTDWHDGARCVRGMLQILGACALGLLGVLADS RLSAIAENGAEGDGSFFARIYQSLDPICGLLTHPWTLLTGYGAGNIINAVWAGAAKAGRL LDGLGMNGGAATGFAAGVNADTVWTMCAYTSVIAEYGLIGLAMLVGASMVCMTRGRTVCR GGADGASSDELAHGVCVADVADVADVAGGNSGGGVAGAGSGESGVWHKTVICWLVLVAYL YIQCENYAFAALPLLVFAASKVRREPDFSRADASTRPEMDQNPE >gi|316916494|gb|ADCN01000012.1| GENE 123 126141 - 127310 1119 389 aa, chain + ## HITS:1 COG:SP0601 KEGG:ns NR:ns ## COG: SP0601 COG0577 # Protein_GI_number: 15900509 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 3 385 67 454 459 199 32.0 6e-51 MLTPRGGGMVRPADVRRIAQLPGVDSYMVRQNATADLVGANVAKVPGGDDYDATQEQQFG NAANVMGTNDSSKLNVFTSRTLGMAEGRHLKASDKYTSMIHEDLAKANGLKVGDTLTLKA NAYDADNESHSTATVKTTIVGIFKGDSARKVSSRAELTANTIYTDLDTTRDLYQYKDGKE IYQDATFVLSKGVDVEKTMDAAKKLPVDWNNYQITRNDQYSSSMLHAARGVRSMMRGALI GVTVSAVLVLSLMLLLWMNDRRQEMGILVSLGVGKPSLVAQYLAEMVLIGLPSLVLGWLC AQGMAQWLGTTALHSVNASAAKELSSMGQVGGDLESSMSVRTLDSLTVSVDGTAMLYVAL GLLAVMLVCVAVACMPMLRKSPRDLSEIR >gi|316916494|gb|ADCN01000012.1| GENE 124 127316 - 128530 1035 404 aa, chain + ## HITS:1 COG:SP0599 KEGG:ns NR:ns ## COG: SP0599 COG0577 # Protein_GI_number: 15900507 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 43 403 5 386 387 121 27.0 2e-27 MNVWKRATLAIVRKPVRSGIIGLLMLMVFTSLVAQVGVSTALRTMSDGIGAGMGIGFTVS AGENPISAEEASRFSRIPGVTKTAYATKTLAQVDGARPVMPRQGPRLDSDLAMQVSVLGT TDSSLSEEFQSGLYRLEQGRHISGDGDNVLVHRDFAMQNGLSVGSTFRLRQEGRNATVRV AGIFSGNVQAQSPLPSDTSENLIYSGRRVASALTGNDRVDMIRCLSDNPQDLSAAIGRAK TMAGGKYDVTDDSARLSGVLQSVQTVRNLVRMVLLSVCLADVLVLAMALVFWIRSRIHEI GTLLALGIDKMRIVAQLAIETGLMAAVAALCSLGTGAMLSGYVSSRLLRDSGVAPLESLH VEALPPEQTMLILLLGCAVIAVALAVSCAAVLSKSPKSILSSMR >gi|316916494|gb|ADCN01000012.1| GENE 125 128543 - 129178 225 211 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 189 1 199 223 91 33 2e-17 MSNCLQLDHVDYAYGAAKIRVLSDVSADFESGKMYAITGPSGAGKSTLLSLLAGLDAPSR GVVRFEGEDIAASGYAKHRREHVSLVFQDHNLIDYLTPEENLRLVSAKADMKILEELGLS REESKRNIMHLSGGQRQRVAVGRALVAPGRAILADEPTGSLDPEMTDEVIHLLQHAAHQL GKCVIVVTHSKRVANSADVVLRLRSKKLTRA >gi|316916494|gb|ADCN01000012.1| GENE 126 129360 - 131183 2674 607 aa, chain - ## HITS:1 COG:MT2242 KEGG:ns NR:ns ## COG: MT2242 COG1022 # Protein_GI_number: 15841677 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium tuberculosis CDC1551 # 30 604 30 601 603 453 45.0 1e-127 MLDHYTTPGESIEIRDNQTIYSLLTDRLARTGADTVIAAKKIGPGRWQNVTTGEFHERVV SAAKGLIALGIAKGDAVTIFSSTRLEWGILDFALAAVGAVSVPIYDTDSAPQAQRIMNDS AVKLAFADNRERFDRLDSVKDHCPALKQILMIEGNALGALEGLGVAVSDEELNERVATVR ADDLATIVYTSGSTGNPKGAELTHKNFVSITISASQALHEVVLDDHPRLLLFLPLAHCFA RFIQYASIASDDGVVGYLPDTKTLLPDLRSFEPTYLLGVPRVFEKVYNAASHKAGAGWKG RLFVKAAEAARVWSRKEQAGEQHTFAEIAERAKYETLVYRTVRGALGPKIKYVACGGAPL SLDLAHFYNGIGLPMIQGYGMTETAAPFAATRVTDNVIGTVGQPAPGSSIRISDEGELQV KGPNVFRGYHNLPEKTAEAFTADGWLRTGDLAEIDDEGHIVITGRIKDIIITAGGKNVSP IPLEEEIAKCPIVEHCVVVGDQRPFIGALVTLDPESLALWLPAHGLSTETPVDRLATNAA VREEIQQYVDKANATVSRAESVRKFAVLDTQFTQENKCLTPSLKVVRPAVNRVFADVIDN EIYNGKR >gi|316916494|gb|ADCN01000012.1| GENE 127 131288 - 131578 279 96 aa, chain + ## HITS:1 COG:CAC1339 KEGG:ns NR:ns ## COG: CAC1339 COG0477 # Protein_GI_number: 15894618 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 17 76 23 82 469 86 71.0 9e-18 MEKLSVWFCGLYTTPCLTGLLYGYDTVSISGAIDFLQDKYALSPALQGLVISSIMIGGVI GAGFSGFLSDKYGRRRSTGRRAKSSTRPRLLRLLAN >gi|316916494|gb|ADCN01000012.1| GENE 128 132128 - 136189 4405 1353 aa, chain + ## HITS:1 COG:PM1474 KEGG:ns NR:ns ## COG: PM1474 COG4988 # Protein_GI_number: 15603339 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Pasteurella multocida # 82 689 33 561 561 388 37.0 1e-107 MFDKRLFQLAPGLKKLIAGKVALMWVGLLANIGFMLSLVMLLNSLLTAVAPPLLQCGGTS QGAACPVPLSDRHGADVLPMAGDVMIYVLLALVCIAVRYTATTHATRLGTEAAERVKLAL RSKLYRKMVALGPSYKTRIKTSDVVQSAGEGVEQIQSFFELFLPQLFYAILAPITLFVAI APINVPAAAVMLVCAPFIIIVTGIVSMTAARAFKKYWVRYTDMGAAFLDNLQGLETLKNF DADERAAIEMDKKAEGFRVMTMRVLQIQLRSLTAMDIVAYGGAAAGIGVALWQYAHIGDA FANGASGWSPIALASHLPGVLAYAAYGLHYLIPFGVGYPLSLTGLLFIVLLSAEFFIPMR QLGSFFHVAMNGMTSTKRIFALLDTPEPEHGTATLPANDSDSADDGLTVRFDHVGYSYDD AGHGDSKSASAKTDKQGETSPNSAVAPALTNITFAARPGQFTAIVGISGSGKSTAASLLA GTLAGYRGSLTLNGVEVSDLSGETLAGAVTVIGASSHLFAGALRENLLMALPDDEIPDSP DSVDSRLWSALEQARIADFVHAQPNGLGMPIESDAANLSGGQRQRIAIARALLHDSPVFV FDEATSSVDMESEELILDTIRELAQSRGKTVIMITHRMANAEHADQVVVLEHGKSVERGT HTELMTADGVYAKLFTTQADIENFGEGHARRVLQVGSRKQELSDDSRTEGGAARVSAEAG MTVDRLQSALPTASVGGSEQASAETPAGVANSDSSSKMSTFQVIRRLLKEARPLAGLMAA ASTAGTIGHLSATFLPVFGIIAAFALTGNPVWGMGVAPAVIMMIICALLRGITRYIEQYL NHNVAFHLLALFRSKAFAALRRLAPAKLAGKGKGNLIAMLTTDVELLEIFFAHTISPVAI AVTSTIIYTIVAATLSPWMALALIAAHLVIGILVPRFFATGVRNLGPAIRGAAGELDDVI LDDMRGLDEIIRFGRGEERAQAIEDRTHALWKDHAKLSKVNGRFTGISGLLVAVLTAASV AVAIACAGANPQSIPALIAAFVLFAGSFGPTLALAALPANLTQTFASASRLFGLMGEVPA VTENGTVVPQEYMGMRLDDVTFAYAGEREVLSDFSLDVPQHGVLGIQGPSGRGKSTMLKL LLRYWDPQRGQVTLSGTPLPEVDVHARRRIQAMMSQETHLFDGSIRDNLLIALPESEVEA ANVAGNGEVGAKTVDSRQQRLAAQSAEGDAVQVAASDGLDARLRQALAKASVLDLIDSLP DGLDTQVGELGDRLSEGERQRIGLARVFLRNADLVLFDEPTSRLDALNEAIILRSIHAMA VGEQHADKERGAAVVLVSHRESAMRIADAVLNL >gi|316916494|gb|ADCN01000012.1| GENE 129 136463 - 136732 192 89 aa, chain - ## HITS:1 COG:BS_araE KEGG:ns NR:ns ## COG: BS_araE COG0477 # Protein_GI_number: 16080449 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 1 87 189 273 464 69 42.0 1e-12 MLRLGAIPAAAFLLSMVRAPESPRFLIQAGKTEEGFAVLEHIIGTEQARLRTDDIHASVK LETEMSHEFHDLFRPGLQKALIIGTLIKA >gi|316916494|gb|ADCN01000012.1| GENE 130 137570 - 138919 2354 449 aa, chain + ## HITS:1 COG:mlr6435 KEGG:ns NR:ns ## COG: mlr6435 COG1653 # Protein_GI_number: 13475383 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mesorhizobium loti # 30 382 15 360 423 129 31.0 8e-30 MRNTKKVIAATAAVATLVGLAACGSSNDNGANKGDADKAELVFWGWDSGNSMKEILADFE KANPGITVKFNNTGTAEKTSTALSNAIAAGNGAPDVVMLEDPTVTQFAVTDGLVDLSEFG ADKLADDFAAGPWNKLQYNNKPYALPIDSGPEMFFYNKAVFDKAGVDGESIKTWNDYYEA AKKIRATGSYITNLAGTSNDYQPFTAQIWQAGAQPWKVDGENITINMTKDEGMQRYIQFV QKLIDEDLVDAKTPNWSDDWNRELNDGTLASLTIGAWMPINLMTGAPDQAGNWRVAQLPQ WEEGKEVSAEDGGSALAVTSQSKNQAAAYKLVEYMTHGEGAQTMADTGTFPSLKKILRSD SFTDPTTESNKKTNDYFGGQNVNEVLSAAAQRPTEKFQYLPYNPYAQTAYGDEVSKAYSG DITLEKALENYANKLAEQGKQQGYNVTVK >gi|316916494|gb|ADCN01000012.1| GENE 131 139138 - 140100 1398 320 aa, chain + ## HITS:1 COG:AGl458 KEGG:ns NR:ns ## COG: AGl458 COG1175 # Protein_GI_number: 15890337 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 40 318 33 312 313 130 31.0 2e-30 MSDQTMAAAPQPTVGILPEEADLHTAEARVNKHKADWRGWKFMWPFAVVFVFVFIIPIVY AIYISFFKKQMVGGTKFVGFENYARLIQDPQFWSSVGRVTIFTVFQVPIMLFLAAAMALA LDSMKLHGTKFFRISTFLPYAVPAVVSTMIWGFVYGAKYGLVGSLNDFLGTNIDVLNPDV LLASIANINTWEYAGYNMLIFYSSLSTIPHSLYEAASIDGASEWQIVKKIKLPELKGSLA ITVIFSIIGSFQLFNEPSILQNMVPGNAITTYYTPNMYAYNLSFTGNQSNYAAALAIVMA IITMAIAYVVQLKSMKEQMK >gi|316916494|gb|ADCN01000012.1| GENE 132 140118 - 141110 1530 330 aa, chain + ## HITS:1 COG:lin1843 KEGG:ns NR:ns ## COG: lin1843 COG0395 # Protein_GI_number: 16800910 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 56 329 13 276 276 139 31.0 6e-33 MTSTTTMTLADLKAQEKAAKKAEKERQKRIDADEKAERKRAAKTGFSNPANPTRSMALTI VCAIFAVYCLFPFVYLMINATKTQSDFTSTFGLGFGKTFALLDNIATVFTYQDGIFGRWF VNTILYVVVGAGGATLLAIMGGYALAKFRFPGRKLCFVIIIGAISVPGIALAVPQFLLFA KMGLTNTPWSMIIPSLVSTFGLYLMWIFSDQAVPDELLEAARVDGAGEFRTFFQISLPLL APGIVTTALFAIVATWNNYFLPLIMLKDSNWYPLTIGLNQWKDQASTAGGQAIQNLVITG SLITIIPLVIAFLCLQKYWQSGLAAGAVKE >gi|316916494|gb|ADCN01000012.1| GENE 133 141078 - 141308 85 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSHINQILYCIGLREVLCLQVVNTREAAPAGEAVSEADWGWSPVESPYDRPQSAPRPAP VRGSQRLLLDGACGEA >gi|316916494|gb|ADCN01000012.1| GENE 134 141297 - 143429 2682 710 aa, chain + ## HITS:1 COG:BH3701 KEGG:ns NR:ns ## COG: BH3701 COG1874 # Protein_GI_number: 15616263 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Bacillus halodurans # 12 707 1 671 672 384 34.0 1e-106 MTTHRAFRWPSLLTESGRGIAFGGDYNPDQWPEETLDEDIRLMGEAGVNVVSLAIFSWDK IEPVEGAFTFEWLDHVIDRLGRAGIAVDLASATAAAPLWLYESHPEVLPVDRYGHTVNAG SRQSWQPTSPVFKEYALRLCRKLAEHYKDNPYVTAWHMGNEYGWNNRYDYSDNALAAFRT WCEAKYGTIDALNEAWGTAFWSQHVNSFDEVLLPRHMGGDAMVNPSQQLDYERFGNDMLL DFYKAERDAIEQICPDKPFTTNFMVSTDQCVMNYAKWADEVDFVSNDHYFHEGESHLDEL ACSDALMDSLALGKPWYVMEHSTSAVQWKPLNTRKRAGELMRDSLAHVAMGADAICFFQW RQSKSGAEAFHSAMLPHAGADSKVFRGVCELGKALKTLSDAGLQGTELERAGTAILFSAE SEWATRSETLPSMKLNHWHDVRDWYRGFLDAGLRADVVPLAYDWTGYKTIVLPTVLSLSD EDVLRIADFAKAGGTVIVGYAAGLIDEHFHIGLGGYPGAGNGLLRDMLGIRSEEFNILGE EAEGEPSEISLSNGLTTRLWQNDVTSVAADTTVLASYAGESAADWELERTPAITSRPYGN GTAIYVGCDLNRHDIAQLLKALGSRWQELSAQPTESGQTPTYPTTDPRILHTIRRSADGS TRFDFYLNRSNQPVAINGVEGDPIIAHRCETDAVGYTLNRNAILIAKTSC >gi|316916494|gb|ADCN01000012.1| GENE 135 143473 - 144528 1280 351 aa, chain + ## HITS:1 COG:BS_degA KEGG:ns NR:ns ## COG: BS_degA COG1609 # Protein_GI_number: 16078147 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 10 350 2 332 337 117 27.0 3e-26 MSDEKTAKRRVTLRDVAQAAGVSLKTASNVINGSGRMTDETRAKVESVIKDLDYRVNVAA RNLNRDHTGFITLAVPSLIPPYLAELANRTIEAARQRDYSVYVTTYAEGSAKGARDLLKK FNSTVSDGMILSMSEVENISPDDLKVDFPLVIVGARTTWGIVDHVTPDDVSAAAMAAGYL YDRGSTRLAVIGARDVYDEDALLNAVEGNAQLRLRGIIEETRRRGLSLDPQLIGNTDQDW TIGAGARVTQRLIDSGVPFDGVIALNDQLAIGALTALRTAGYEVPVQVQVIGFDNNEEAP YLQIPLTTMDSRLDWTAPTAVNRILGRIDGSITKSELLTTESQVIARASTR >gi|316916494|gb|ADCN01000012.1| GENE 136 144724 - 147417 3182 897 aa, chain + ## HITS:1 COG:BH2023 KEGG:ns NR:ns ## COG: BH2023 COG3867 # Protein_GI_number: 15614586 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinogalactan endo-1,4-beta-galactosidase # Organism: Bacillus halodurans # 34 706 203 859 921 470 41.0 1e-132 MRRNTALTRIMASGVAAIMLCAGGTFTVNAAEEEPVKADVSVKAIQGLSDDFIGGMDVSS MLSLEESGVTFKNANGEVEDLFTLLKESGVNYVRLRVWNDPFTADGQGYGGGNVNADRAL TMAKRATAAGLKVLVDFHYSDFWADPSKQQVPKAWKSFEGDADKTADTVYDYTKQTLTTF KQAGVDVGMVQVGNETTAKIAGISGWDGMSKVFSAGSKAIREVLPEAKVVIHFTNPEKAG TYATYAKQLSNHNVDYDVFASSYYPFWHGTTENLTSVLKNVASTYKKDVMVAETSWAYTL DDGDDDSNTVPSKVTADNLKKYDISPQGQADEIRAVAEAVNNIGDNDGDGENDGLGVFYW EPAWVPVGTGGKDNAELVDTWNKYGGGWATEAAGEYDPNDAGLYWGGSGVDNQALFDFDG KALASLPTFKYIHTGAVTDHVFTKIDPVEITATDSDSIDAIKAQLPSEVTAHYQDGVDET ETVTWQSAALDWIRGAGTYTITGTTNAGHDVTVTVTVTATPAKDYVTDGSFENAENDKNW TIAGTGASITEDSGNAADGKRALKFWASDAYSFSATQTITGLEPGEYVLTAMSQGAAADN AAITDGVALSATTGGKTTSDALELNGWVKFDTATVPVTVGADGTATITITGNLPADAWGN VDKVSLVKKTETPVKPSTENLDKAVAEAGKINRDEYTNESLAKLDQALAAADVLLAGSTY TEQDVNDVIKLVADAIAGLAQKEVSSLTVTPSKTTYQVGDAIDADHDLKVVGNYSAGMGN VTLSADQFTLDYDFSAPADAAKVTVTLKSNPNVTETYTVAVTARAEGGSGNGSDGAGNGG ATINPDTGEGDKTNGANGDKITGVLSNTGSAVTAVGLAVVVLGVAGGVSLALRRKRS >gi|316916494|gb|ADCN01000012.1| GENE 137 147427 - 147702 68 91 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRHYDAVAGSRQPAARCHLSAVVYRLSAVRCVCLGAAMRFCPGSCINRLMWVPGQKSLSW FAKTGVFRVPGQFPLPRFARQSFYVRTGTVC >gi|316916494|gb|ADCN01000012.1| GENE 138 148053 - 148922 1198 289 aa, chain + ## HITS:1 COG:BMEII1060 KEGG:ns NR:ns ## COG: BMEII1060 COG0656 # Protein_GI_number: 17989405 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Brucella melitensis # 11 287 22 293 294 263 49.0 2e-70 MTNGHINPANVPDIALKDGHSIPQVGLGVLRIDDEGVVPVVESALEAGYRHIDGAAGYNN EAGVGRALAASGYNKGAKRETLWVTTKLRDSQQGYDSALKAFDNSLELLQLDYVDMYMIH WPTPFDWRSTDTWKAFVKLRDEGMARTLGVCNFMPADLKRLHEETGAWPAVNQIELHPTW QQREVVAFCKEHGIAVEAYSPMARGADINAGDGTIEKIAAAHEVSPAQVILRWHIENGTI IIPKSVHADRQKENLNLFGFALTADEHAAIDALDGPTRAGHDPLTFTYA >gi|316916494|gb|ADCN01000012.1| GENE 139 148926 - 149669 861 247 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0421 NR:ns ## KEGG: BLJ_0421 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 247 1 247 247 480 100.0 1e-134 MARRNAHFRRRFNASGPLERVLILIVLAVAIGVTIGLLLPQVSSDVAKITGGYTATGSAA DTLNALAVDDNQSSSGYDRDSFGFRTTDVDGNGCDVRDDVLARDLTDITYKYAGSCVVES GTLADPYTAQTIHFVRGRATSAKVQIDHVVALENAWQSGAHDWSTAKRHEFGNDPYNLLA VDGPANQEKGSASAAYWLPTNADYRCDYVARQIGVKDKYQLTVTSQEKDAMLAVLHTCPG QAVPADE >gi|316916494|gb|ADCN01000012.1| GENE 140 149673 - 151043 1248 456 aa, chain - ## HITS:1 COG:FN1101 KEGG:ns NR:ns ## COG: FN1101 COG1373 # Protein_GI_number: 19704436 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 14 431 34 448 470 172 29.0 1e-42 MYLKRKADAYLNAWKSDPNRSPLIIKGPRQVGKTETIDYFAAHNYRSVVEINFVEEPKYR AITADGYGANTIVRNISLIDPAKKFIPGDTLIFFDEIQAHPDIATALKFFKIDGKYDVIC SDSMLGISYKQIESNSVGYKTDYEMRSLDFEEFLWARGYDEAVIESMFTHLCDATPFSEV EMNVFSTAFMDYCVLGGMPAVVASHIRTGTFEGTLQLQRQLILDYQEDIRKYAQGLDQAR ILNVFNHIPVQLAKENKKFQISKVASGARFKDYRGCVEWLETSGMVNICRCMSYPELPLK GNYDENKFKIYFGDTGLFVAMLDDEASDDLRANRNLGVYKGAMYESIVSEALRKSGYDLY YYKKEDSTLEQDFFVRTREWLVPVEVKSKKGTAKSMRTLIASDSYPEIQFGVKLSAGNIG SSEHVFTAPYFTTFLLRRLLRAYDEGQAPMLNNPER >gi|316916494|gb|ADCN01000012.1| GENE 141 151294 - 152661 1605 455 aa, chain + ## HITS:1 COG:Rv0924c KEGG:ns NR:ns ## COG: Rv0924c COG1914 # Protein_GI_number: 15608064 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Mycobacterium tuberculosis H37Rv # 61 453 35 428 428 355 51.0 1e-97 MAVTHTAADVIAATTMTNAVADIEQETPEIEKERQLAGVGTGTGAGANNKKKPHDHALAS ILGPAFVAAVAYVDPGNVAANITSGARYGYLLVWVLVLANAMSVLIQYQSAKLGIVTNKS LPELLGERMSDAGRFMFFMQAEVIAIATDLAEVIGGAIALNLLFGFPLFIGGLVIGTIST VMLWFQGGKTQTTFERIIIVMLLVITFGFIAGLFVAPLNPGEVVKGMIPRFQGVDSVLMA ASILGATVMPHAIYLHSTLVNDHYAGGEKPSIKTQLRGSKIDVAWALLLAGTVNLAMLVL AANSLHGMSGTDSIDGAQRAITQVLGPVIGTIFSIGLLASSLSSTSVGTYAGSEIMHGLL HVNAPMWACRVVTLVPALIVLWFAKDPTQALVIGQVVLSIGIPFAVIPLMRYTHDKELMG KWVDGPVKHVIFMIVVALIVALNVLLIVLTLMGRA >gi|316916494|gb|ADCN01000012.1| GENE 142 152761 - 154365 1662 534 aa, chain - ## HITS:1 COG:lin2733 KEGG:ns NR:ns ## COG: lin2733 COG0477 # Protein_GI_number: 16801794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 41 507 20 482 493 261 34.0 2e-69 MHVSGMNGARGIKNRRGELQRVLSREESYVDGKLSRAAFISIAILTFITFVGNFTQLQLS SALPIIVSEFHISVTTGQWLTSVFQLVMGVMVPLTAFLTRRFSTRQIVICSMAVFTVGSL LAWLGPNFVWVLVGRVLEAAGTGVMWPVLQITVFSIYPLSRRGFAMGTVGMAMSVAPAIG PTLGGWQTDANGWRSIFLTMTVIGVVSLLAAMFGLHNFGSHDPSARADFFSVSLSVIGFG GLMFGFTNSETYGFTAPVTWGPMVVGLIGIVWFVLRNLRAGKRYREAVAKDKSALPQPPL LDLEVLKNRSFTVGTITASLAFFAFSSILVIMPLYIQTDRGYSATMSGLIMLPGAIGQCV SQFFGGRAMDRFGARPVALFGSIVLTLGTLGMSLVAMDTWIWWVSICQFIRQIGMGFLLM PITTWSLNCLNGPSEVSAGSSVTNTARQIAGAVGAPVLVILMETFAALHKQGGASAVAAS IFGIQWALRISTMICLAMVLMVFFGVKGDGAGRTRDIISLRSLRERRARRMAAN >gi|316916494|gb|ADCN01000012.1| GENE 143 154673 - 155026 472 117 aa, chain - ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 2 112 267 376 383 137 61.0 7e-33 DDAEHVQQAIIDKMQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGT NENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELLDAA Prediction of potential genes in microbial genomes Time: Fri May 13 12:43:29 2011 Seq name: gi|316916421|gb|ADCN01000013.1| Bifidobacterium sp. 12_1_47BFAA cont1.13, whole genome shotgun sequence Length of sequence - 83223 bp Number of predicted genes - 77, with homology - 74 Number of transcription units - 43, operones - 15 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 424 151 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 2 2 Tu 1 . - CDS 2768 - 2986 207 ## BLD_1904 hypothetical protein - Prom 3010 - 3069 1.8 3 3 Tu 1 . - CDS 3097 - 3438 289 ## BLD_1903 hypothetical protein for probable DNA repair - Prom 3459 - 3518 1.6 - Term 3823 - 3866 -0.3 4 4 Tu 1 . - CDS 4006 - 7461 431 ## BLD_1902 restriction endonuclease - Prom 7500 - 7559 3.2 - Term 7513 - 7547 7.0 5 5 Op 1 . - CDS 7656 - 9074 1750 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 6 5 Op 2 . - CDS 9123 - 9773 872 ## COG1949 Oligoribonuclease (3'->5' exoribonuclease) - Prom 9815 - 9874 1.7 - Term 9894 - 9930 -0.9 7 6 Tu 1 . - CDS 9941 - 11494 2356 ## COG0516 IMP dehydrogenase/GMP reductase 8 7 Op 1 4/0.077 - CDS 11547 - 12830 1430 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 9 7 Op 2 . - CDS 12827 - 13495 696 ## COG0009 Putative translation factor (SUA5) + Prom 13514 - 13573 1.6 10 8 Tu 1 . + CDS 13676 - 14353 835 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 14489 - 14523 1.4 - Term 14350 - 14390 2.5 11 9 Op 1 18/0.000 - CDS 14485 - 15189 291 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 12 9 Op 2 19/0.000 - CDS 15189 - 16049 206 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 13 9 Op 3 24/0.000 - CDS 16046 - 17134 1799 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 14 9 Op 4 20/0.000 - CDS 17139 - 18065 1585 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components - Prom 18198 - 18257 3.5 - Term 18208 - 18249 9.2 15 10 Op 1 . - CDS 18307 - 19494 2228 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component 16 10 Op 2 . - CDS 19537 - 19689 85 ## 17 10 Op 3 32/0.000 - CDS 19770 - 20678 169 ## PROTEIN SUPPORTED gi|224825464|ref|ZP_03698569.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 10 Op 4 10/0.000 - CDS 20741 - 21829 1516 ## COG0216 Protein chain release factor A - Prom 21858 - 21917 2.9 19 10 Op 5 . - CDS 21983 - 22195 392 ## PROTEIN SUPPORTED gi|23466256|ref|NP_696859.1| 50S ribosomal protein L31 - Prom 22263 - 22322 2.9 - TRNA 22333 - 22406 81.1 # Met CAT 0 0 - Term 22321 - 22361 -0.9 20 11 Tu 1 . - CDS 22524 - 23753 1476 ## COG1940 Transcriptional regulator/sugar kinase - Prom 23894 - 23953 2.8 + Prom 23851 - 23910 4.4 21 12 Tu 1 . + CDS 23973 - 25493 2026 ## COG1070 Sugar (pentulose and hexulose) kinases + Prom 25602 - 25661 5.5 22 13 Op 1 . + CDS 25687 - 26034 417 ## BLD_1885 hypothetical membrane protein 23 13 Op 2 . + CDS 26044 - 26388 447 ## BLJ_1588 hypothetical protein + Term 26411 - 26455 9.5 - Term 26586 - 26616 3.3 24 14 Tu 1 . - CDS 26651 - 26833 161 ## BLD_1883 hypothetical protein - Prom 26898 - 26957 3.5 - Term 26923 - 26969 11.7 25 15 Op 1 . - CDS 27024 - 29003 1881 ## BLJ_1594 xylosidase 26 15 Op 2 1/0.231 - CDS 29067 - 29699 804 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 27 15 Op 3 . - CDS 29772 - 31544 605 ## COG3507 Beta-xylosidase 28 15 Op 4 1/0.231 - CDS 31621 - 33240 1604 ## COG3507 Beta-xylosidase 29 16 Op 1 38/0.000 - CDS 33355 - 34251 1247 ## COG0395 ABC-type sugar transport system, permease component 30 16 Op 2 35/0.000 - CDS 34248 - 35300 1259 ## COG1175 ABC-type sugar transport systems, permease components 31 16 Op 3 . - CDS 35394 - 36677 1970 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 36864 - 36923 5.3 + Prom 36912 - 36971 4.9 32 17 Tu 1 . + CDS 37046 - 38086 938 ## COG1609 Transcriptional regulators - Term 37950 - 37978 0.1 33 18 Tu 1 . - CDS 38095 - 39294 1188 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Term 39512 - 39557 5.6 34 19 Tu 1 . - CDS 39648 - 40997 2170 ## COG2115 Xylose isomerase - Prom 41036 - 41095 6.1 + Prom 41022 - 41081 1.8 35 20 Op 1 . + CDS 41294 - 41527 347 ## COG0477 Permeases of the major facilitator superfamily 36 20 Op 2 . + CDS 41565 - 41864 133 ## BLJ_1609 hypothetical protein - Term 41692 - 41725 3.0 37 21 Tu 1 . - CDS 41874 - 42674 584 ## BL1701 hypothetical protein + Prom 42500 - 42559 3.2 38 22 Tu 1 . + CDS 42592 - 42801 57 ## gi|239621618|ref|ZP_04664649.1| predicted protein - Term 43504 - 43565 15.1 39 23 Op 1 . - CDS 43603 - 44022 324 ## COG0242 N-formylmethionyl-tRNA deformylase 40 23 Op 2 . - CDS 44030 - 44476 700 ## COG0477 Permeases of the major facilitator superfamily 41 23 Op 3 . - CDS 44477 - 44983 418 ## BLJ_1615 MarR family transcriptional regulator - Prom 45014 - 45073 5.1 - Term 45086 - 45121 4.5 42 24 Tu 1 . - CDS 45187 - 45441 347 ## BLJ_1616 hypothetical protein - Term 45473 - 45526 16.1 43 25 Op 1 11/0.000 - CDS 45547 - 46764 1772 ## COG4214 ABC-type xylose transport system, permease component 44 25 Op 2 11/0.000 - CDS 46764 - 48317 2191 ## COG1129 ABC-type sugar transport system, ATPase component 45 25 Op 3 . - CDS 48418 - 49575 1775 ## COG4213 ABC-type xylose transport system, periplasmic component - Prom 49648 - 49707 6.2 46 26 Op 1 1/0.231 + CDS 49828 - 50997 384 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 47 26 Op 2 . + CDS 51035 - 51901 901 ## COG1129 ABC-type sugar transport system, ATPase component - Term 51890 - 51919 1.9 48 27 Tu 1 . - CDS 51926 - 52876 391 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - TRNA 53299 - 53375 90.0 # Asp GTC 0 0 - Term 53261 - 53294 5.4 49 28 Tu 1 . - CDS 53416 - 53646 97 ## - Prom 53700 - 53759 1.7 + Prom 53625 - 53684 2.9 50 29 Tu 1 . + CDS 53710 - 55389 3000 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 55433 - 55463 4.1 + Prom 55446 - 55505 2.5 51 30 Tu 1 . + CDS 55701 - 56606 916 ## COG1946 Acyl-CoA thioesterase 52 31 Tu 1 . - CDS 56701 - 57228 589 ## BLD_1853 hypothetical protein 53 32 Tu 1 5/0.077 - CDS 57403 - 58815 1072 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 54 33 Op 1 4/0.077 - CDS 58925 - 59800 1251 ## COG0294 Dihydropteroate synthase and related enzymes 55 33 Op 2 4/0.077 - CDS 59863 - 60462 830 ## COG0302 GTP cyclohydrolase I 56 33 Op 3 11/0.000 - CDS 60557 - 62650 1242 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 57 33 Op 4 10/0.000 - CDS 62647 - 63210 450 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 58 33 Op 5 2/0.154 - CDS 63197 - 64363 646 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 59 33 Op 6 . - CDS 64453 - 65943 1204 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 60 33 Op 7 . - CDS 65966 - 67639 1935 ## BLD_1844 hypothetical membrane protein 61 33 Op 8 2/0.154 - CDS 67636 - 67992 381 ## COG1131 ABC-type multidrug transport system, ATPase component 62 33 Op 9 2/0.154 - CDS 67923 - 68600 485 ## COG1131 ABC-type multidrug transport system, ATPase component 63 33 Op 10 . - CDS 68696 - 69919 1682 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 64 33 Op 11 . - CDS 69919 - 71433 1825 ## COG0628 Predicted permease 65 34 Tu 1 . + CDS 71509 - 72435 984 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 72571 - 72597 0.1 - Term 72527 - 72589 4.2 66 35 Tu 1 . - CDS 72658 - 73809 2026 ## COG1454 Alcohol dehydrogenase, class IV - Prom 73916 - 73975 1.8 + Prom 73800 - 73859 1.8 67 36 Op 1 . + CDS 73979 - 74191 56 ## gi|239621568|ref|ZP_04664599.1| predicted protein 68 36 Op 2 . + CDS 74249 - 75553 1629 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 75699 - 75728 2.1 - TRNA 76073 - 76148 75.9 # Phe GAA 0 0 - TRNA 76196 - 76269 81.7 # Asp GTC 0 0 - Term 76447 - 76481 3.1 69 37 Tu 1 . - CDS 76494 - 77507 1708 ## COG1087 UDP-glucose 4-epimerase - Prom 77597 - 77656 3.4 + Prom 77572 - 77631 2.1 70 38 Tu 1 . + CDS 77835 - 78695 1287 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 78783 - 78849 30.0 + TRNA 78765 - 78836 53.6 # Glu TTC 0 0 71 39 Op 1 8/0.000 + CDS 79132 - 79935 1039 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 72 39 Op 2 . + CDS 79932 - 80264 539 ## COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) + Term 80311 - 80343 3.1 - Term 80381 - 80412 2.5 73 40 Tu 1 . - CDS 80443 - 80961 698 ## COG0394 Protein-tyrosine-phosphatase - Term 81026 - 81078 16.2 74 41 Tu 1 . - CDS 81085 - 81747 869 ## COG0262 Dihydrofolate reductase + Prom 81584 - 81643 2.7 75 42 Tu 1 . + CDS 81739 - 81879 80 ## 76 43 Op 1 . - CDS 81857 - 82729 1164 ## COG0207 Thymidylate synthase 77 43 Op 2 . - CDS 82778 - 83206 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916421|gb|ADCN01000013.1| GENE 1 2 - 424 151 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 84 140 1 57 57 115 100.0 9e-25 AANSRLSRATARVTVDRETSAPCSSLNRSQILVAVCRCLRQFARSSASHCSITGRYGSIT DARGFLTDGTADRSSFARYLRTVGSLTCVFRAIDATDSPFRRKRRIDCTWGMLIIILSGP FWRRYKHHPVKTIPWSACSA >gi|316916421|gb|ADCN01000013.1| GENE 2 2768 - 2986 207 72 aa, chain - ## HITS:1 COG:no KEGG:BLD_1904 NR:ns ## KEGG: BLD_1904 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 72 39 110 110 151 100.0 6e-36 MGYGMVQYSVYVRYTPTQSGNRATVKMIKDNLPANGLVRILHISDHQWSTAARFSSGKRE IEEETPDFLTLF >gi|316916421|gb|ADCN01000013.1| GENE 3 3097 - 3438 289 113 aa, chain - ## HITS:1 COG:no KEGG:BLD_1903 NR:ns ## KEGG: BLD_1903 # Name: not_defined # Def: hypothetical protein for probable DNA repair # Organism: B.longum_DJO10A # Pathway: not_defined # 1 113 27 139 139 230 100.0 2e-59 MVLRGFAVKAVIAAGLIPSLGVNHHGRGNYFCLADDLLEVYRPAVDYRVSLLNDEDSLQE KAVKKHLVDAVNQQFNGSGLTIPSSLNDFAQQFGLYCEGKIDRLQVPEYVGES >gi|316916421|gb|ADCN01000013.1| GENE 4 4006 - 7461 431 1151 aa, chain - ## HITS:1 COG:no KEGG:BLD_1902 NR:ns ## KEGG: BLD_1902 # Name: mcrA # Def: restriction endonuclease # Organism: B.longum_DJO10A # Pathway: not_defined # 1 1151 37 1187 1187 2256 100.0 0 MRGKRYRIGIDVGLNSVGLAAVEVSDENSPVRLLNAQSVIHDGGVDPQKNKEAITRKNMS GVARRTRRMRRRKRERLHKLDMLLGKFGYPVIEPESLDKPFEEWHVRAELATRYIEDDEL RRESISIALRHMARHRGWRNPYRQVDSLISDNPYSKQYGELKEKAKAYNDDATAAEEEST PAQLVVAMLDAGYAEAPRLRWRTGSKKPDAEGYLPVRLMQEDNANELKQIFRVQRVPADE WKPLFRSVFYAVSPKGSAEQRVGQDPLAPEQARALKASLAFQEYRIANVITNLRIKDASA ELRKLTVDEKQSIYDQLVSPSSEDITWSDLCDFLGFKRSQLKGVGSLTEDGEERISSRPP RLTSVQRIYESDNKIRKPLVAWWKSASDNEHEAMIRLLSNTVDIDKVREDVAYASAIEFI DGLDDDALTKLDSVDLPSGRAAYSVETLQKLTRQMLTTDDDLHEARKTLFNVTDSWRPPA DPIGEPLGNPSVDRVLKNVNRYLMNCQQRWGNPVSVNIEHVRSSFSSVAFARKDKREYEK NNEKRSIFRSSLSEQLRADEQMEKVRESDLRRLEAIQRQNGQCLYCGRTITFRTCEMDHI VPRKGVGSTNTRTNFAAVCAECNRMKSNTPFAIWARSEDAQTRGVSLAEAKKRVTMFTFN PKSYAPREVKAFKQAVIARLQQTEDDAAIDNRSIESVAWMADELHRRIDWYFNAKQYVNS ASIDDAEAETMKTTVSVFQGRVTASARRAAGIEGKIHFIGQQSKTRLDRRHHAVDASVIA MMNTAAAQTLMERESLRESQRLIGLMPGERSWKEYPYEGTSRYESFHLWLDNMDVLLELL NDALDNDRIAVMQSQRYVLGNSIAHDATIHPLEKVPLGSAMSADLIRRASTPALWCALTR LPDYDEKEGLPEDSHREIRVHDTRYSADDEMGFFASQAAQIAVQEGSADIGSAIHHARVY RCWKTNAKGVRKYFYGMIRVFQTDLLRACHDDLFTVPLPPQSISMRYGEPRVVQALQSGN AQYLGSLVVGDEIEMDFSSLDVDGQIGEYLQFFSQFSGGNLAWKHWVVDGFFNQTQLRIR PRYLAAEGLAKAFSDDVVPDGVQKIVTKQGWLPPVNTASKTAVRIVRRNAFGEPRLSSAH HMPCSWQWRHE >gi|316916421|gb|ADCN01000013.1| GENE 5 7656 - 9074 1750 472 aa, chain - ## HITS:1 COG:SPBC887.14c KEGG:ns NR:ns ## COG: SPBC887.14c COG0507 # Protein_GI_number: 19113280 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Schizosaccharomyces pombe # 15 425 327 775 805 216 33.0 5e-56 MRQTEALAILNAGANVFLTGAPGAGKTYVLNEFIRQARADGASVAVTASTGIASTHINGQ TIHSWSGVGVATALSASLLKLIKSRRKRKIQATDILVIDEVSMLHAWLFDMVDQVCREVR RDPRPFGGIQVVLSGDFFQLPPVSVSGRNRDLIAPTPEFIASRERYARAGLNPEGFITES LVWPELNPVICYLTEQHRQDTGELLTVLTDIREGDVTQSDRDVLVTRLGKLPEPGQVAVH LFPVNRQADNLNDMRLNQIMLDPHEFHAETAGPANLVDRLKKNMLAPERLILKEGAAVMA LRNDTDRQYVNGSLGTVRGFAQENKGGWPIVEFENGNIVTMKQATWEMMDGDTVLASVFQ VPLRCAWGITIHKSQGMTLDRAVMDLKRTFAPGMGYVALSRVESLGGLYLAGVNERMFLV SPDAVVLDGDLREASAAASDQLADEGANAFKPAEPDEFGANPDDDFAQDALF >gi|316916421|gb|ADCN01000013.1| GENE 6 9123 - 9773 872 216 aa, chain - ## HITS:1 COG:MT2586 KEGG:ns NR:ns ## COG: MT2586 COG1949 # Protein_GI_number: 15842039 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Mycobacterium tuberculosis CDC1551 # 17 208 5 196 215 182 48.0 4e-46 MVDSHDAETYSAKDSRLIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKP SEKAVNHMNDFVRQMHTRSGLINEWENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIG SDKKFLDHYMPNLMSHLHYRSVDVSTFKELARRWYPAVYENRPPKNGGHRALADIIESLD ELRYYRKAFMAPAPGPDDAASKAIAADIVATSILNK >gi|316916421|gb|ADCN01000013.1| GENE 7 9941 - 11494 2356 517 aa, chain - ## HITS:1 COG:Cgl0587_3 KEGG:ns NR:ns ## COG: Cgl0587_3 COG0516 # Protein_GI_number: 19551837 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Corynebacterium glutamicum # 222 511 1 291 292 347 62.0 2e-95 MATNLDELNAQSAYAPLPPIFAKLGLAYDDVLLLPNETDVIPSEVDTSTHLTRKIVMKAP VLSAAMDTVTESEMAIAMARNGGIGVLHRNLSIDDQAAQVDVVKRSESGMITDPLTVNPE VTLADLDKLCGKFHISGLPVVDKENKLVGIITNRDMRFIASEDYDTLKVKDVMTKENLVT GPSNISKDDAHRLLAQHKVEKLPLVDEEGHLTGLITVKDFVKTEQYPDATKDEQGRLRVA AGVGFLGDAWQRASALMEAGVDVLVVDTANGEARLALDMISRLKHDSAFDGVQIIGGNVG TRSGAQAMIEAGADAVKVGIGPGSICTTRIVAGVGVPQLTAVYEAAQACRAAGVPCIADG GIHYSGDIAKALVAGASSVMLGGTLAGCEEAPGEKVLLHGKQYKLYRGMGSLGAMAPRGK KSYSKDRYFQADVTSSDKVVPEGVEGEVPYRGPLNAVLYQMLGGLHQSMFYIGAHNIAEM PERGKFIRITDAGLRESHPHDIVMTTEAPNYSGFHNN >gi|316916421|gb|ADCN01000013.1| GENE 8 11547 - 12830 1430 427 aa, chain - ## HITS:1 COG:Rv1302 KEGG:ns NR:ns ## COG: Rv1302 COG0472 # Protein_GI_number: 15608442 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Mycobacterium tuberculosis H37Rv # 1 359 30 393 404 236 41.0 5e-62 MRIYLLIAAIAGGVTWLVTPLIRHVAIEIGAVGEVRARDVHTIPTPRMGGLGMLIGFAVA TVFASRLPFLSGLFNGNYQMWVILAGGIMISLLGMADDLWDLDWMLKLAGQLLISVFVAW GGLQIISLPLGGSLITASPSLSMAITAFLIVASINAVNFVDGLDGLAAGIVAIGGIAFAA YSYIIARSSPSYASLATLIDVMMVGICVGFLLHNWHPAKLFMGDSGSMLLGYLITCASIV MTGRLDPASIHASIYLPVFMPILLPILVLFLPVLDMCLAIVRRLAKGQSPMHPDRMHLHH RMLKIGHSVRGAVLILWGWAALIAFGSLTILFFKAQHVAVGMPIAVVVLTIATMYPYLRH RIPEIQAENLTLESARKNAQHATVKSQSAVGESRDSIGSQAADSMTDSPADSRDSQAGEV QDPAADK >gi|316916421|gb|ADCN01000013.1| GENE 9 12827 - 13495 696 222 aa, chain - ## HITS:1 COG:aq_651 KEGG:ns NR:ns ## COG: aq_651 COG0009 # Protein_GI_number: 15606072 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Aquifex aeolicus # 7 214 3 195 198 103 31.0 2e-22 MEGGTTLKVTDESLAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYK ALQVLLASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGT QGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAVDAFGSEVDLYLDGGPTQGH VSSTVVKADPYARDGIEILREGVIAQNVIRKALHLNGGGLGA >gi|316916421|gb|ADCN01000013.1| GENE 10 13676 - 14353 835 225 aa, chain + ## HITS:1 COG:SA2342 KEGG:ns NR:ns ## COG: SA2342 COG0110 # Protein_GI_number: 15928134 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 22 214 2 186 199 154 42.0 1e-37 MSEINAESTTMPPVELRMPRASEREEMLAGKLYNSVDPELNALREKAGDLCARFNAASRT DHAARAAILDELLPGHGAGLDVMGPIFFDYGCNITIGERVFANFNFTVLDCCPVTIGDDV LFGPNVSLLPPMHPLRWQDRNVRQAPDGSAYDCEYGKPIVIGSNCWFGGNVTVIGGVTIG EGCVIGAGSVVTRDIPPHTVAVGNPARPIREITDKDASALQYYAQ >gi|316916421|gb|ADCN01000013.1| GENE 11 14485 - 15189 291 234 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 229 1 237 245 116 30 3e-25 MLEIKDLCVSYGAIDAVKGISLKVNDGEIVSLIGANGAGKTTTLHTITGLVPAKSGSITY DGHDLLKTHANKIVTLGMAHVPEGRHVFTRMSVQENLEMGAFSLKDQSSLGKDLEMVFDY FPRLKERRRQLAGTLSGGEQQMVAMGRALMSHPKTILMDEPSMGLSPLLVKEIFDIIVTL RKRGITVLLVEQNAKMALSIADRAYVLETGKITMEGKASDLLHDEKVRKAYLGA >gi|316916421|gb|ADCN01000013.1| GENE 12 15189 - 16049 206 286 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 238 1 221 309 84 26 2e-15 MSDATQPILKAEHLGITFGGLKAVSNFNMTINKGELIGLIGPNGAGKTTVFNLLTGVYKP TEGEFWLDGTRMNGKKTYQVVRAGIARTFQNIRLFKQLTVEENVLVAFDESFTYHMGSAI FRTPGFWKQENEMHEKAIDLLRIFNLEGLATTQAANLPYGQQRKLEIARALATGMKLLLL DEPAAGMNPTETEDLLHCINTIRDRFGIAILLIEHDMSLVMSVCQRIQVLDYGRTIASGT PEEIANNPQVISAYLGSDNNDDADGDSTTKAEPEPSIAKTLTEGAR >gi|316916421|gb|ADCN01000013.1| GENE 13 16046 - 17134 1799 362 aa, chain - ## HITS:1 COG:FN1430 KEGG:ns NR:ns ## COG: FN1430 COG4177 # Protein_GI_number: 19704762 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Fusobacterium nucleatum # 48 328 4 271 285 231 50.0 1e-60 MKKTMLSTKQSYLVCFIGILAAFGIVMALCESGLADSYIKGIMMTACIAIIMTTSLNLTI GVLGQLTLGCCGFEAIGAYVAALTSKYMVAAGIAIDPTARFLLTTLIGGVVACVFGILIG IPALRLHGDYLAIITLGFGEIIRVIIQNLKVAGGMGLDKGAAGQALIGIERTANLYVVFW IMVVTVVVLFMFGRSRYGRAVKAIRDDEIAAGASGLNTTYLKVLVFAISAFFAGIAGGIF AQYIGSLNPTMAGWLNSINYVIMVVFGGMGSLTGSIVSAIGLTILPELLRAFADYRMLAY SVVLVLVMIFRPQGIFGSWEFSLPRLVNRMLFRGAAGKGAKPAASAKQHDQSDDKTVKEA SR >gi|316916421|gb|ADCN01000013.1| GENE 14 17139 - 18065 1585 308 aa, chain - ## HITS:1 COG:FN1431 KEGG:ns NR:ns ## COG: FN1431 COG0559 # Protein_GI_number: 19704763 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Fusobacterium nucleatum # 8 308 16 308 308 273 53.0 4e-73 MTDQIIMFISQLFNGLKIGSVYALVALGYTMVYGIIRLINFAHGDFIMVGAYVLMLTIPA IVAMGLPAWVAVIPAILVCVAVGVIVEKAAYKPVREKGNSMTALITAIAMSLLLENGSQA IFGADFQTVPTIFHLPSIAFGKLKLPGDTLLTIVIGLVIMVGLQLFVKFTRQGKAMRAVS EDKEAAVLMGINVNSTIALTFAIGSGLAAVASLMYCAAYPQVSPMMGAMLGLKAFVAAVL GGIGSIPGAMIGGLAIGLIESLTKAYIGTITAGIITSAFSDAIVFAILIIVLLVKPSGIM GKNEGEKV >gi|316916421|gb|ADCN01000013.1| GENE 15 18307 - 19494 2228 395 aa, chain - ## HITS:1 COG:FN1432 KEGG:ns NR:ns ## COG: FN1432 COG0683 # Protein_GI_number: 19704764 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Fusobacterium nucleatum # 19 392 13 381 383 244 41.0 2e-64 MNVKFSTKFVAASAAAVMALSLAGCSGGSMDDSSSSSAKASGDSITIGTVTTNSGTAAAY GEAEVKGFELAVSEINAKGGINGKKVKLESMDDKGDATEASNAYNKLAGDNNVLAVAGPT ISATTAAVAPLADQSKLVTIAPAATSDSIETGNYLFRTCFKDSYQGEVAARFAAENLKVK KVAVLYGTGDPYSSGVGEAFAKAAEKLGLEVVDKESSSSADDTEYSAQLQKIQASGAELL YAPYYYSVAGPYIIPQARSVGFEGYVMGPDGYDGLKLTGDKSQYNKTYYTTHYSADDNTN TKVQDFIKSYKSKNNAEPNTFAALGYDTIYMIKQAIEKAGENATREDVRNAVAGMTFDGV TGKFTMDKSGSPTKSVTVLEMKDGKPVYNTTVQPK >gi|316916421|gb|ADCN01000013.1| GENE 16 19537 - 19689 85 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRVQSRSGYNSPRQTSDERDVNDGHKPCDVVLWYANYVSGTSHAHIPRVG >gi|316916421|gb|ADCN01000013.1| GENE 17 19770 - 20678 169 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|224825464|ref|ZP_03698569.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Lutiella nitroferrum 2002] # 71 264 75 258 300 69 29 5e-11 MSDQRRPPVLITDIINQASSQLREAGIETPEHDAKLLLAEAAGVELRDVDRALLMGEELG TTGQLAVFRAMLDRRAKREPLQYITGHAPFRYLDLKVGPGVFIPRPETETVVQAGLDWLT KNGMIHPCVVDLCAGSGAIGLSVVSEVPGSQVWAVELSPNTAEWTRRNLSETAKKYPSIA SNYHLEIADATSFATLAQLDGTVDIVITNPPYVPQTDIPEQPEVRDWDPELALYGGSMDG TLIPERIIERACRLLKPGGVLVMEHDVTQGDRLVAFARATGFAAASTGQDWTGRDRYLFA VS >gi|316916421|gb|ADCN01000013.1| GENE 18 20741 - 21829 1516 362 aa, chain - ## HITS:1 COG:ML1134 KEGG:ns NR:ns ## COG: ML1134 COG0216 # Protein_GI_number: 15827565 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Mycobacterium leprae # 13 358 12 358 361 343 54.0 2e-94 MADEQFPAAATALEEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVGAYKAWLQVKD DLAAAQEMAGEDADFAEEAKRLEDELPGVEEKLRTALIPRDPDDARDTIMEIKAGTGGEE AALFAGDLLRMYTRYAEKRGWSVNVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMK YEGGVHRVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQ SVNTTYSAVRMTHLPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRH SQVRSLDRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLAN QK >gi|316916421|gb|ADCN01000013.1| GENE 19 21983 - 22195 392 70 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466256|ref|NP_696859.1| 50S ribosomal protein L31 [Bifidobacterium longum NCC2705] # 1 70 1 70 70 155 100 7e-37 MQQGIHPDYHPVEVTCSCGNTFVTRTAGKEDHMFVDVCSQCHPFYTGKQKILDTGGRVAR FEKRYGKKSK >gi|316916421|gb|ADCN01000013.1| GENE 20 22524 - 23753 1476 409 aa, chain - ## HITS:1 COG:mll8569 KEGG:ns NR:ns ## COG: mll8569 COG1940 # Protein_GI_number: 13477068 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Mesorhizobium loti # 4 406 3 369 388 107 28.0 6e-23 MANLRRINQEDLRNHNLSVTLDTLLRAQKPMSRADLAKETGLTKATLSLLASMLIESGVV QEGEPVVSTTYGRPSTPLEIRGGSIAGIGLQINTDGYGCLALDLNGDTLGREWVSEDMTG TDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGFALPGIVTDDMWLLVARNLGWENVNLTR FNVVRRLDVVAGNEAKMAAIAQIPGYATERAPFLNVVDRTDSFIYLSTDIGIGGAVVRDG EVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAI DMFLQRWRAGDSDVAKVVDQAADALVSAIASAVNLVDVDTVLLGGLWTHFGDELATVLEG RLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIENPLGYMGEK >gi|316916421|gb|ADCN01000013.1| GENE 21 23973 - 25493 2026 506 aa, chain + ## HITS:1 COG:Cgl0113 KEGG:ns NR:ns ## COG: Cgl0113 COG1070 # Protein_GI_number: 19551363 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Corynebacterium glutamicum # 5 481 3 429 460 342 46.0 9e-94 MTRVLVAGVDTSTQSTKVRITDAATGEQVRFGQAKHPDGTSVNPEFWWEAFTKAAEQAGG LDDVAALAVGGQQHGMVILDKQGNVIRDAMLWNDTSSAPQAAALIDKLGAAPAEGDEPDD VTARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENAKKIAAVCLPHDWLSWRIAGYGPV AEGEDAHLEALFTDRSDASGTIYYDAAHDEYRRDLIAMVLAPAEGEEAAKAHADAIVLPT VLGPREAAAVKADPAIAGKDVEGGCIIGPGGGDNAMASLGLGMAVGDVSVSLGTSGVAAA IAENPVYDLTGAISGFADCTGHYLPLACTINGSRILDAGRAALGVDYDELAELAFKAEPG AGGITLVPYFDGERTPNRPDATASLTGLTLHNTTKENLARAFVEGLLCSQRDCLELIRSL GAEINRILLIGGGAKSVAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLSGEAEPPT WQLTIEGVETGEPTEAVYEAYAKARG >gi|316916421|gb|ADCN01000013.1| GENE 22 25687 - 26034 417 115 aa, chain + ## HITS:1 COG:no KEGG:BLD_1885 NR:ns ## KEGG: BLD_1885 # Name: not_defined # Def: hypothetical membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 115 1 115 115 151 99.0 6e-36 MNDRSRMMLYALTAVACVMWIWQSVKESMNDGTIISTSNIIFLVCIGIAAIYCAANALIL WWRQPGKDDAADDDETDSTDAEAEAEQAEENEHDDVADTADTDTADAKENHNPQH >gi|316916421|gb|ADCN01000013.1| GENE 23 26044 - 26388 447 114 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1588 NR:ns ## KEGG: BLJ_1588 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 105 1 105 114 160 87.0 1e-38 MDATTLSITLSAILAVICIPCGLFLGLVPMKADLVTAKQSKASQMVSFIVAIVFIGLLVA GHDLETWAMVIGLVIGFAVAKIPALHAWALHKWPFFEPKKMAPTPKRVKKARKK >gi|316916421|gb|ADCN01000013.1| GENE 24 26651 - 26833 161 60 aa, chain - ## HITS:1 COG:no KEGG:BLD_1883 NR:ns ## KEGG: BLD_1883 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 60 1 60 60 64 100.0 9e-10 MRAHHVLLLSLCLLAAAYAVLLFVSPAAAPIGVTLTVVGLVLVSTRYAWRAKFLALFNEA >gi|316916421|gb|ADCN01000013.1| GENE 25 27024 - 29003 1881 659 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1594 NR:ns ## KEGG: BLJ_1594 # Name: not_defined # Def: xylosidase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 659 1 657 657 1244 96.0 0 MTQYHVSAQAAKTNGAGSAADPFLTIGQAAAIARAGDEVVVHAGTYRESVDPRFGGESAT NRIVYRAAAGEPRPVITGSERIDTWQPEGDGVWKAVIPNAFFNGYNPYVETVFGDWTVYP DPKVEVRHLGDVYLNGKSFYEVASLDKVRNPQRWDTGRDAATDSIVPLIDPDATVNVWCC AVDDEATTIWANFHEADPNAELTEINVRETCFYPSRPFVNYITVSGFEMAQAACPYTPPT ADQVGLVGPHWSRGWVIENNRIHDAKCSAISLGKEISTGDNESTRTHRKSGYQYQKEAVY KALHAGWEKGVVGGHVVRGNVIYDCGQNGVVGHMGCAFSLIEGNHIYRIGAKREFFGWEV AAIKMHAAVDTVVRGNRVHDSVLGMWLDWQAQGTVVDSNVFYRNTRDVMTEVTHGPITFM NNVFASEFSFDDYAQGAAFVNNLFAGRIRHTAVLDRSTPYHFPHVTDVAGEAFVYGGDDR YVNNLFLAVDDSAKPLCTADAAGAAGMAEAGTAFFDGYPRSLEEYEQLIEEAGLGDEELY RSVKQPVLLASNAYVSGAKAASGEAEAVVSGDGSSLALRETDDELWMTVSLPESIRSATG PVISTADLGQPRIVEEYFENPDGSPIVVDRDITGAARGACSARGPLAAYGDGEVLIWSK >gi|316916421|gb|ADCN01000013.1| GENE 26 29067 - 29699 804 210 aa, chain - ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 26 197 15 187 203 140 38.0 2e-33 MAHDLEQLKQDHPDVAKLFADDWLQYRKSEILPELTREAQSTCDRINRIYFEDTAEAERL FRKLVPEAGEGVDFRPPIRLDYGLGLKIGDRTFINMDLLIVGGGPISIGSDCLIGPRVSI YTPNHAIARKPRLEGWQHNADVTIGNNVWLGGNAVICPGVTVGDNSIIGAGAVVTHDIPA DSIAVGNPCHVIAEVPDDWTPEERAAAEKQ >gi|316916421|gb|ADCN01000013.1| GENE 27 29772 - 31544 605 590 aa, chain - ## HITS:1 COG:CC2802 KEGG:ns NR:ns ## COG: CC2802 COG3507 # Protein_GI_number: 16127034 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Caulobacter vibrioides # 21 366 37 326 548 130 30.0 1e-29 MASDNEHCGDRGRECTITVSNPVLHGMYPDPSWIWDTTREEIVLVNSSFELVPGLPIHTT RDLVTWTRTANAVDEAMSHRLLIDGVEDSGGLYAPTIRRIGGRYVIVCTVARVDEVKALA AGCSQKDIDNCRDAQGNFVIEADELTGPWRGPYWVAGAEGIDPDIFEDGDGTVWWTQTRP ALHPQWDGQTEIWTQPIAPGTWTLQDHKTVIWRGYGMDAVWAEGPHLYRVGDYLYLMTAE GGTSFEHSEMIMRTHAPRGFAAALAGFEKNLAAQDIWIEPARDGERSVVGHDNRLFEACK RNPILTHRHLGAGEPVQCVGHADLLLHPTVGWLLACLGIRETPGEEPGETFSYCGRETFV APVVWQHNPVSWKLDGGEPNKRIDIDDPGWPVVAPGLGRLPEKLVVDVDEDGLPCAVRGV DSAGCDCAAGNNAACPAELIQLDDTRLVGVRGRDDYRFLRVDGQEYAAFTRPEYTMMIHQ DSTHAVMVMAEAESGQLTAEITDRGDKRCIALGALGANEWFGLRLHGNRLEFLAGQPASD SIDEGTMPDIALIAHADVTYARIMADCDARFLSTEWAGGFVGCLIGVKRR >gi|316916421|gb|ADCN01000013.1| GENE 28 31621 - 33240 1604 539 aa, chain - ## HITS:1 COG:L0234 KEGG:ns NR:ns ## COG: L0234 COG3507 # Protein_GI_number: 15673487 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Lactococcus lactis # 3 539 4 539 559 791 70.0 0 MKISNPVLPGFDADPSMIRVGDTYYIANSTFDWWPGVRLHESRDMVHWNLLPGPLNRVSQ LDMKGNPSGGGIWAPDLSYADGKFWLIYTDVKIVNGAFKDCANYLVTADDIRGPWSDPIR VNGVGFDASLFHDTDGRKYLVQQTWDFREYHHPFDGITLTEFDVKTMQLKPETARTIWRG TDVKLVEGPHLYAINGWYYLFCAEGGTQYEHQESVARSRTLGELSFESMPSNPFLSNFDT PGTYLQKQGHGALVDTPSGEWYYASLCGRPWRHENEPAHGVRGWCTLGRETSIQKVEWDG DGWPYVVGGHGGERYVEAPADAIATEAPTNHSQHDEFESNKLDLNWNTLRVPFTETMGRV GGGSLTLRGQGSLANLFELSLVGRRWQAFDFNAETKVTFDPSNYMQMAGLTNFYNHLCWS WAFITWDEKRGQRVIEVAQNDFDTYTSFLKDTAIAIPDDIESVWLRTKVRTRTYTYEYSF DGKTWHEIPVTLDAAVLSDDHVAQRYGGFFTGAFVGLVAVDLSGYGKEAIFSHFDYMEI >gi|316916421|gb|ADCN01000013.1| GENE 29 33355 - 34251 1247 298 aa, chain - ## HITS:1 COG:AGl3158 KEGG:ns NR:ns ## COG: AGl3158 COG0395 # Protein_GI_number: 15891695 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 297 7 281 282 189 38.0 5e-48 MTTAVSPSVGKGKNKTYDPYALRKSAKTPWGNPVVYFFSLLLVALCVGPVLYIIIGGFRT NAQITRDPAGWPDPWNFENYKTVFTSNIFWPELVNSLIVSIGTMVGIVVLALMVSFVIAR YEFKFNKLLYSLFAAGMMFPITVAITPLYLLLRNLHLINSHLGIILPQIAFGLPQAIIIL VPFLKSIPKELEEAAELDGCSRIGFFGRMVLPLSWPGVATVGILSFVSSWNAYMLPLFLL NDSSKYTLPLGVQMFSSQHSVDTAQVLAFTSLSMIPALICFTIFQKKIVGGLTGAVKG >gi|316916421|gb|ADCN01000013.1| GENE 30 34248 - 35300 1259 350 aa, chain - ## HITS:1 COG:SMc02472 KEGG:ns NR:ns ## COG: SMc02472 COG1175 # Protein_GI_number: 15966816 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Sinorhizobium meliloti # 40 308 48 312 312 177 37.0 3e-44 MSVSAGAKVQRRTSGLSDKVRKRIEITILSLPALIMFLGFVILPVFMAGYYGFFKWKGYG KPTVNGQFIGFENYKVILTDPNFQQALGHTLFVVVASLVIQGPLAILFALLLNQKFKGRA LIRTLIFVPYVVSEVIVGTGWSLILQTTGALNALLKKIGLGGADWISDPKIAIWTLMFII SWKYIGFAVILMIAGMQSIPEDLYEAAKVDGAGFWRQQWSITLPLLGPTIRIWAFMSIIG SLQLFDLVYIIWGQYVSSTAGTSTMATYMVREGRLANNYGYGSAVAVVIFIISLVIALTY QRFVLNRDLEGALTDEKDAKRRAKRAAKEAAKLAKANGNAAAVANEVVSQ >gi|316916421|gb|ADCN01000013.1| GENE 31 35394 - 36677 1970 427 aa, chain - ## HITS:1 COG:SMc02471 KEGG:ns NR:ns ## COG: SMc02471 COG1653 # Protein_GI_number: 15966817 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Sinorhizobium meliloti # 51 423 54 430 434 164 31.0 3e-40 MKFKSVAAALLAAVTCVSMAACGSGGDTNADGKVEITMWHNSTTGDGKAYWESAAKAFEK ENPNVTIKIEAIQNEDMDGKLQTALQDPNSAPDIFMARGGQKLRDVVEAGQAMDLTDKIS DTVKNQMATAEATGTIDGKIYSVQQSVLPGGIWYSKDLFEKAGITETPKTWDEFKTVVQK LKDAGITPIAVGGKDAWPAAHWWYWFALRECSADTFDKAQSDKDFSDKCWTRTGDDVQAL LDLDAFNDGFLTTPAQQGASSSAGLLANHMAAMELMGGWEPGVIKDLTPDKKDMADLGYF AFPTMDGGEGDPTAIMGGSDGMAVGEWAPEEAVDFLNFVSEKEWQEKYAEAFSTIPANKE AQDVVTNEALKQVLTVYNDASSVSMWLGTVFGQNIGNALNEGVVNMMAGQGSAQDIVKGV ETAAAKG >gi|316916421|gb|ADCN01000013.1| GENE 32 37046 - 38086 938 346 aa, chain + ## HITS:1 COG:ECs4861 KEGG:ns NR:ns ## COG: ECs4861 COG1609 # Protein_GI_number: 15834115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 12 342 7 340 341 171 32.0 2e-42 MASAEQRKSNGENKVKLADIAKQTGYSLATVSKALNGKADISEAARQAIDKALKDNGYIR RVSLSRKQRTIEVVFRDFETIWALEVLRGIITEAKPHNINVMVAESGDRQHPDSSWVEGI IDRQPIGAILVFSNLTDKERSMFQSHGIPFVVFDPSGNPALDDLSVQADNWMGGVIATRH LLELGHKRIGIITGPDEMLCSRARLDGYSAALAERNIPTSPELITEGDFTTPGGYEGAMA LLEDEQSRPTAIFAGNDLQAMGVYEAARQLKIRIPEDLSVIGFDDIQTAAYMGPALTTVR QPLQDMAATAARMVIDTNEGRKIQKRVVLSTSLVVRDSTRRLKSRD >gi|316916421|gb|ADCN01000013.1| GENE 33 38095 - 39294 1188 399 aa, chain - ## HITS:1 COG:BH3344 KEGG:ns NR:ns ## COG: BH3344 COG1979 # Protein_GI_number: 15615906 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Bacillus halodurans # 1 392 1 385 387 306 42.0 4e-83 MRDFIFHNPVKIYFGKGQARHIAQEVERVEGAVLVVYGGGSIKRNGAYDDVMAALAGTGR KIIELPGVTPNPRLDKALEGVRLVKEHGVGLILAVGGGSVIDCAKFISLGSGIGDDEDLW DDYIETGKPAPEGLIPVGVVLTTAATGSEMGDAAVLTNWERNRKLGYTSFPLMPRFSVLD PSYLMTLPAEQTVYGFEDMFCHTCEQYFSYPVDDNLSDEIAEGIQRHILRSWRACLSDPK DYEARSNAMWDSTLALNRIISRGKEEDWVTHGIEHALSAYTDIAHGAGLAVVHPHWMAYV YLVNDEVTARFARWAVDVWGVTPTGKTDRTVAEEGIDRYVDFLRRVGAPLTLSEAGVPDD PASLDKYADHAGEAGGSFVQIHRDDARAILEACKEPVSF >gi|316916421|gb|ADCN01000013.1| GENE 34 39648 - 40997 2170 449 aa, chain - ## HITS:1 COG:TM1667 KEGG:ns NR:ns ## COG: TM1667 COG2115 # Protein_GI_number: 15644415 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Thermotoga maritima # 5 448 7 443 444 496 55.0 1e-140 MGLWDVDKIEYVGRAKGPKEDFAFHYYDADKVVAGKKMKDWLRFGVAWWHTFNQELVDPF GTGTAHRPYYKYTDPMDQALAKVDYAFELFQKLGVEYFCFHDRDIAPEGDTLRETNANLD KVVDKIDENMKSTGVKLLWNTSSLFTNPRFVSGAATSPFADIYAYAGGQLKKSLEIGKRL GAENYVFWGGREGYENLWNTEMKRETDHIAKFFHMCADYAKEIGFEAQFLIEPKPKEPTL HQYDFDAATAIEFLRNHDLTDVFKLNLEGNHANLAGHTYQHEIRVARESGFLGSLDANQG DKLIGWDMDEFPTDLYETVAVMWEVLQAGSIGPHGGLNFDAKPRRTSFYEEDLFRSHIAG MDTYAAGLLVADKMNQDGFIQDLMAERYSSYDSGIGKDIDEGNVTLADLEAYSLDKPQSE LIAATKSDHLESVKATINNYIIDALSEVE >gi|316916421|gb|ADCN01000013.1| GENE 35 41294 - 41527 347 77 aa, chain + ## HITS:1 COG:lin1658 KEGG:ns NR:ns ## COG: lin1658 COG0477 # Protein_GI_number: 16800726 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 76 13 88 489 84 61.0 5e-17 MVITLMIGSFVAILNQTLMISALPTLMHEFDVPSSTVQWLTTGFMLTNGIMIPITAFLIE TFTTRQLFLYAMGIFAE >gi|316916421|gb|ADCN01000013.1| GENE 36 41565 - 41864 133 99 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1609 NR:ns ## KEGG: BLJ_1609 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 99 17 115 115 156 100.0 3e-37 MPSGIAMGILNPVAGKMYDRIGGRPLALLGFAIMTSAAVLLVTIMNTHTAAAMRTGVPEA AASAIGVRASFRTVAIVCAVCLVASLFIRDRGRRLGQQR >gi|316916421|gb|ADCN01000013.1| GENE 37 41874 - 42674 584 266 aa, chain - ## HITS:1 COG:no KEGG:BL1701 NR:ns ## KEGG: BL1701 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 266 1 266 266 541 99.0 1e-153 MSTATTTTAENAGLPAMLDTKDVAEMFKRCNLAVYAEARRIYYREVNLNPCKKYPKQVLQ RIEWWFWDWFAYDCAVSGIGLTGNESEDLRIELQYGPGAGISPFLALAEFMYDKDERIGT REIRDFREFDDTNFASMFWIRDASAVKGRLTVEDIIHGGVYEVADVHAASQYDGAHGGMI VNRIAHVRGVWRSCSIPIYEARRPDDPQIGDSLARSFRETGYKPDFAGLVRFFYGRAKDT GLDWEDVEAARQAGTLDALIKKASNR >gi|316916421|gb|ADCN01000013.1| GENE 38 42592 - 42801 57 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239621618|ref|ZP_04664649.1| ## NR: gi|239621618|ref|ZP_04664649.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 69 4 72 72 114 98.0 2e-24 MNISATSLVSSIAGKPAFSAVVVVAVLMVFPLHVMWTAGYVARREAHCMTFVRWPASPHG EMVDKWKTQ >gi|316916421|gb|ADCN01000013.1| GENE 39 43603 - 44022 324 139 aa, chain - ## HITS:1 COG:SP1549 KEGG:ns NR:ns ## COG: SP1549 COG0242 # Protein_GI_number: 15901392 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Streptococcus pneumoniae TIGR4 # 1 139 1 136 136 124 46.0 5e-29 MQRPIMTSRSFLRTPSEAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRIIVFVD EDLGGRITVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYEDRRFRARHATFT GWTAQIIQHEVDHCNGIII >gi|316916421|gb|ADCN01000013.1| GENE 40 44030 - 44476 700 148 aa, chain - ## HITS:1 COG:L180636 KEGG:ns NR:ns ## COG: L180636 COG0477 # Protein_GI_number: 15673521 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 18 142 8 132 457 96 38.0 1e-20 MNGGENKIVTHSATQLPNGGKQPVSNKLVIAVVSLAILTFLGILSETSLNIAYSTPMEEF SIGASVVQWLVTGYLLLLSVSIPSSPFMVRKFATKTLFIMAIVIFTAGTLLGALAVNFPM LLAARLVMSLGTGISLPLITNIHWHEEA >gi|316916421|gb|ADCN01000013.1| GENE 41 44477 - 44983 418 168 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1615 NR:ns ## KEGG: BLJ_1615 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 168 1 168 168 328 100.0 3e-89 MCDSRTDTKTGLLPVNEVRSLLDVCWKAKTITELMPALPKGMKPRYVHVIDAVWHINEPN GQDTGTARVGDVSAFLGVTTPSITKLVGEMADLGLVVKHADAADRRAVTLTLTERGLDIR RIYVEEYHAHLSQLLGGLTSDQCETTVRTLTEALRLMQEDFQRRSQNI >gi|316916421|gb|ADCN01000013.1| GENE 42 45187 - 45441 347 84 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1616 NR:ns ## KEGG: BLJ_1616 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 84 29 112 112 139 98.0 4e-32 MKLTARSTSRMYALTCLACVIWLWQSLVEANNDGSLFNWATIVFSLCLLVVIGWSGWNAV AGWNAKETEAATAGAKDDEGSTDR >gi|316916421|gb|ADCN01000013.1| GENE 43 45547 - 46764 1772 405 aa, chain - ## HITS:1 COG:BMEII0362 KEGG:ns NR:ns ## COG: BMEII0362 COG4214 # Protein_GI_number: 17988707 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, permease component # Organism: Brucella melitensis # 21 403 18 396 396 273 42.0 4e-73 MSAATATPAKKEEKTGLLATVANNARQYGIVGALLVIVVAFEVLTGGVLLKPNSFVSLIQ QNAYVIILAIGMVMVIIATHIDLSVGSLVAFIGGVCALLMERAGVNWMLAIVIALVVGLI VGVWQGFWVAVIGIPGFITTLAGMLIFRGLATVIVGESVPITSLEFRGIARNYLPNILGW WGPFDGLTIVLGILCIVGFAWSQLRKRARVAKVGLVPEPMSLTVLKIVLAAVVIAFVTYL LASSGNADQGGTPIMLVIVGVLVFIYNFILTKTVFGRHVYAVGGNRKAAILSGINTRRVD FLLFVHMGFLSAVAAVCMLSRLASATAQAGMEFEMDAIAACFIGGTAVTGGIGTIPGAVI GAFVMGVINQGLSIMGVDTAVVKTIKGLVLLLAVAVDIMSKRKKS >gi|316916421|gb|ADCN01000013.1| GENE 44 46764 - 48317 2191 517 aa, chain - ## HITS:1 COG:BH3441 KEGG:ns NR:ns ## COG: BH3441 COG1129 # Protein_GI_number: 15616003 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Bacillus halodurans # 1 511 1 508 517 560 58.0 1e-159 MSSNDTILTMENITKTFGPVKALTDVNLSVDRGEIHAICGENGAGKSTLMNVLSGVYPYG SYSGKITFDGKECKYHTINDSEADGIVIIHQELALSPFLSIAENIFIGNEQAKGGVIDWD KTRAEAKKLLDRVGLPEDPDTKVMDIGVGKQQLVEIAKALSKDVKLLILDEPTAALNDED SAHLLDLVRQLRDEQGVTSIIITHKLNEVAAIADNVTIIRDGSTVGVMYVTPETPLDQEE LIRKMVGRPLHNLYPNHPSNTPGEEYLRVEDWTVHHPLDAERVIVDHANINVHAGEIVGL AGLMGAGRTEMAMSIFGHSYGSNISGKVFVKGKEVKMPNVQSAIDAGLAYATEDRKGNGL NLLQNIRENASLASLTKISKGGVVDDNLERKEVEQYRKDFNIKCHDIDVNVSTLSGGNQQ KVLLAKWVISQPDILILDEPTRGIDVGAKYEIYEIIDKLADAGKAVIVISSELPELIGIC DRIYTVSYGVVTDNVEKNGFTQEYLMKGMTKEREVAA >gi|316916421|gb|ADCN01000013.1| GENE 45 48418 - 49575 1775 385 aa, chain - ## HITS:1 COG:AGc4267 KEGG:ns NR:ns ## COG: AGc4267 COG4213 # Protein_GI_number: 15889625 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type xylose transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 42 380 28 353 354 239 43.0 7e-63 MKFTKKIVAVVAGVAMCAGLAACGGSRSGQATGGDAKIEKGATIGISMPTKSEERWNKDG NNLKAKLEKAGYKVILSFADDKPAQQNADIENMVNNDAKIVVVASKDGTAVGPAVEKARD AGAKVIAYDRLIMNTDAVDYYATFQLEQVGVLEATWLIDQLKLKDGATGPFNIELFTGSP DDNNAKYFFKGAWDLLQPYFEKGVLVSPSQHGQGGVTKDFTVEDWQKISVMSWKTEQAQK DMESILDSTYAHGEKLDAVLTPYDGIAQGVINAIESKRPDMKPGTDSWPYITGQDAMEIA VANIAKDKQGETVFKDVNKLADAVYDMVVEIAEGKEVSGLNGKFNNNNIDVPSKLLDPQN ITKDNLQDLVTANYITQDRFDELTK >gi|316916421|gb|ADCN01000013.1| GENE 46 49828 - 50997 384 389 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 85 378 7 313 323 152 29 6e-36 MATRLFGSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDEDQLE TKNTVRNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKADT TLERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITAPLR TAFNVPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGLAG EIGHIQVDPLGAICSCGNRGCLDTVVAENRLVQLLSVTHGNMTLDDLVSFANEGDPGCRR IIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQRMLFPDAVAPIDV LVSSHPDDNCALGGALCAIEFSVRNDVSQ >gi|316916421|gb|ADCN01000013.1| GENE 47 51035 - 51901 901 288 aa, chain + ## HITS:1 COG:BMEII0982 KEGG:ns NR:ns ## COG: BMEII0982 COG1129 # Protein_GI_number: 17989327 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Brucella melitensis # 4 246 23 264 288 212 51.0 7e-55 MRNSSTPPLLRLEDICVKFGFVEALKSVNLSIQRQEVIAIVGDNGAGKSTLIKVIAGFLQ PGFGHIYLNGEQVTIPSIREADRMGIASVFQGQEFCDNLDVASNLFLGKEINQIGIRDDD SMNSRARSVLKTLSSAIRVGSPIASLSVGQRQTVAIARTLLNDPQLILLDEPTAALSVMQ SAEVLAYIKRLRSEGRSVVMVCHDLPDVFAVSDRIVVIRQGHVTGVHRTVETSYEEIIAE IAGVTTEHEYEEIAENPKFDSMVRQRKLIDRTISAAVSHGTGHDSPLD >gi|316916421|gb|ADCN01000013.1| GENE 48 51926 - 52876 391 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 6 314 8 313 323 155 32 9e-37 MTTLAIDIGGTKIAAAVCDENDSIIQRWRVPTPMDADAINQHIAEVYREAVAAGHTDIEA IGISAAGNVSADRKTLTFSANIPAWINYDLSEHVGALIDHAVPVVVENDANCAGWGEYVH GAGQGSSNMVALTVGTGLGGAIVINGQLYRGSFGMAAELGHLPMVPDGDHCGCGLRGCAE RYTSGTSLENFAKSAVRRRPQDAKRLMELCGGDISKLEGPMVSQAAQEGDVLGLYAFGKI GEWLGRTMAAVSAVLDPDLFVIGGGVVAVGDILLEPARYNYQRFLEGSAYRGHAKIVAAT AGQDAGLIGAANLALR >gi|316916421|gb|ADCN01000013.1| GENE 49 53416 - 53646 97 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDTLCAARSTPPESRIAVRRVRPVPPCPHNDRIHAKPPPTMVSEGLEWRASLWLGGVMDG PDIAVARRAGRRAVVQ >gi|316916421|gb|ADCN01000013.1| GENE 50 53710 - 55389 3000 559 aa, chain + ## HITS:1 COG:MT2552 KEGG:ns NR:ns ## COG: MT2552 COG0488 # Protein_GI_number: 15842003 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Mycobacterium tuberculosis CDC1551 # 1 559 1 558 558 796 72.0 0 MAEFVFQMIKARKSYGDRVILDDVTLSFLPGAKIGVVGPNGMGKSTLLKIMAGLETVSNG EASLTPGFTVGILQQEPPLDDTKTVGENIKMAFGPIAEKVARFNEIGEEMANPDADFDAL MEEMGKLQTEIDAADGWDLDSQLEQAMDALQCPDPDTPVNVCSGGERRRVALCKLLLEAP DLLLLDEPTNHLDAESILWLEQFLHQYKGAVIAVTHDRYFMDNVAEWICEVDRGHLYPYK GNYSTYLETKAKRLEIQGAKDAKLAKRLKNELDWVRSSPKARQAKNKARLERYDQMENEA RNNKKLDFSEIQIPAGPRLGSTVLEASHIHKAFGERVLIDDLSFTLPRNGIVGVIGPNGV GKSTLFKTIVGLEPLTSGELKIGDTVKISYVDQNREGLDPNKNLWEAVSGGLDFIEVAGV EVPTRAYVASFGFKGADQQKLTGVLSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETL ESLENALLEFPGCAVVISHDRWFLDRVATHILAWEGDDDNPAKWYWFEGNFQAYQENKVT RLGEDAARPHRLHKKLVRG >gi|316916421|gb|ADCN01000013.1| GENE 51 55701 - 56606 916 301 aa, chain + ## HITS:1 COG:CC3649 KEGG:ns NR:ns ## COG: CC3649 COG1946 # Protein_GI_number: 16127879 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA thioesterase # Organism: Caulobacter vibrioides # 38 298 30 282 284 177 39.0 3e-44 MAQATTVTPLDHLVKVLKLGEPSAYRNHTYINGESMYFPTGRVYGGQVIAQSVIAASKTV GPSRLPHSVHGYFIAAGDIRQDLLFDVENLRDGRSFSARRVNVTQAEGSILTAIASFQET GQEGVEFADPMPENLPDPETLTSAKELMQPFAEKSPFANYYAEKSPFDIRHVTPTVMLRA DKDSAEHDSGKQMVWMKADGHVDVPQVMHRAMLALGCDQVMMEPVLRRAGLSISTPGISY ASIDHSMWWYQDIDINEWHLYVQDTPIAAHGRGLGIAKVYAQNGDLVAAIAQEAMVRVPQ E >gi|316916421|gb|ADCN01000013.1| GENE 52 56701 - 57228 589 175 aa, chain - ## HITS:1 COG:no KEGG:BLD_1853 NR:ns ## KEGG: BLD_1853 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 175 1 175 175 332 99.0 5e-90 MKTRRTPWWQYVIGAVLGLLAGIGLASYGESSGLSLIGAPWIVTGLLAVLGVIVLILALQ VHKYANTDPKKRPHSFINPTIAVYTLVLSKALGLAGATLAGWYGGQIVMSLSHIEADFYA HAVTECAIAAVVCIADMIIGIIGEWLCQLPPNEGPENPKIKEAKRRSDIAQAYKR >gi|316916421|gb|ADCN01000013.1| GENE 53 57403 - 58815 1072 470 aa, chain - ## HITS:1 COG:NMA0958 KEGG:ns NR:ns ## COG: NMA0958 COG0801 # Protein_GI_number: 15793915 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Neisseria meningitidis Z2491 # 133 280 5 149 164 112 47.0 2e-24 MDTITLTGVHANGTHGVLAFEHERPQTFVVDVTLHLDLAAAGQSDDLNDTIDYGRVAKDI TAVIEGPHVDLIERLAQRIADEILADAPAVASIDVTVHKPHAPIVVAFADVSVSISRVRA TDNGRTAEEHAIHNAVVALGGNVGEVESTLRAAVREIDALPGTQVTGISPLYRTAAWGMA DGTPDFLNAVVELETTMGSHELLAALQSIEANHGRIRENHWDSRPLDLDIIDFDGITSAD PDLALPHPRAWQRAFVLAPWAALNPNAKLAGAHEGPVADLLAAAPDRNAVQLESEDWMLG GHAVKQKSASESAPVSRKAIISLDSTSQDAERLFRETIVSIDSVPGNQVQGISPLYHVSH FDGPDAMSAVIQIETKLPPADLIAVLGSIESVHDLAVDLDLVDMEGVTSDEPNCSIPWPS ARNHASVLAPWLDMDPNASLGGDPVAFLLAMAPDSGQVGLLSDNWILSNS >gi|316916421|gb|ADCN01000013.1| GENE 54 58925 - 59800 1251 291 aa, chain - ## HITS:1 COG:ML0224 KEGG:ns NR:ns ## COG: ML0224 COG0294 # Protein_GI_number: 15827021 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Mycobacterium leprae # 15 287 8 270 284 202 47.0 6e-52 MTDLQALHDTTHTMVMGVLNITEDSVSDGGLWLDPAKAAQHGRDMMAAGADIIDIGAEST RPGAKRVSEADELVRITGAVKTLIPAGAVLSIDTTRASVAAAALSEGAQIINDVSGGTLD AELPHVVADHDCLYIVQHWRGWLAGSKGANPDQDTSVYEHGVLTDVHDELMRQVDGVLAA GVKPERIIIDPGLGFSKPGIEHNLPLLTGLETFRATGYPVLIGQSRKRFISAMLTEAGAA GADGPIMAQRDDVTAALSALSAEHGAWAVRVHDVAKSRAAVIAGNTWREYA >gi|316916421|gb|ADCN01000013.1| GENE 55 59863 - 60462 830 199 aa, chain - ## HITS:1 COG:MT3713 KEGG:ns NR:ns ## COG: MT3713 COG0302 # Protein_GI_number: 15843221 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Mycobacterium tuberculosis CDC1551 # 13 199 14 202 202 228 63.0 8e-60 MNEYIESCHREKRTYDEEGVREAVRLFLKSIGEDPEREGLVETPDRIARACRELFAGLQA SPADVLEKHFDVDTDELVLVKDIELYSVCEHHLLPFHGVAHVGYIPAKDGVMGLSKLARL VEVYARRPQVQERLTQQIADALVEYAGARGVIVVTECEHLCMSMRGIKKSSARTVTSAVR GLLRNPATRAEAMSLILDK >gi|316916421|gb|ADCN01000013.1| GENE 56 60557 - 62650 1242 697 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 42 651 2 590 636 483 46 1e-135 MSFPQGPGNGNNPNPNNNRNNGNPFTNPFNRGNNGNNGKGNNNENRPIWQSPWLWGAVLV VVVVLMFQMFAGGGTKTIDTKDGFALINQGKATYAEITDNKQVVRLKLKNDYTKKNADTG KVTNYGKNVQFYYTFAQGAQVAKAVENGDLEKGWTSNIEQTSMMSYLITSILPFVIFFAL FWFLMSRMGGAGGMLGMGGKKNSGKLLDGQTPTTKFADVAGEDEAVAEVEEIKDFLKDPS KYKALGARIPRGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRD LFDEAKKNAPAIIFIDEIDAVGRKRGSGMGGGHDEREQTLNQLLVEMDGFDNDTNLIIIA ATNRPDVLDPALLRPGRFDRQVGVAAPDLEGREAILRVHAKGKPFVPDVDLHMVAVRTPG FTGADLANVLNEAALLCARAGAQLIDNRAIDEAIDRVQAGPKRKSKGMALEELRNTAYHE GGHALVAAALNNTDPVTKVTILPRGRALGYTAVMPTSDRYSQSRNQLLDQMAYAMGGRTA EEIVFHDPTTGASNDIEKATNIARTMVIEYGFSDKLGAIKWGSDDDQTTVMDGLQPRKYS DRTAEVIDDEVLKLVETAHTEAWTIINDNREILDELVRQLLVKETLNEKELAAIFAPIKK APVRPVWLSNDRRPDSDKPPVEIPESLKRSVGMKPEE >gi|316916421|gb|ADCN01000013.1| GENE 57 62647 - 63210 450 187 aa, chain - ## HITS:1 COG:CAC3203 KEGG:ns NR:ns ## COG: CAC3203 COG0634 # Protein_GI_number: 15896450 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 6 183 1 178 178 169 46.0 3e-42 MRIADVEEDIDHELVSKEQIDAKIHEMAALASEDYRDKNPLLVAVLKGAVNTLVAFTEAM SIPVQIDFMSLSSYGSGTVSSGEVTVRQDLSADVRGRHILIVEDIVDSGRTLAWLVAELK RRGAASVEVFALLSKPSRREVDVDVKYAGYEIPDEFVVGFGLDFDERYRNLDSIAVLKPS VYQGVQA >gi|316916421|gb|ADCN01000013.1| GENE 58 63197 - 64363 646 388 aa, chain - ## HITS:1 COG:ML0213 KEGG:ns NR:ns ## COG: ML0213 COG0037 # Protein_GI_number: 15827015 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Mycobacterium leprae # 48 364 30 298 323 105 35.0 1e-22 MAYSARLRKAVGAVRATLSAVELCDVQAPEFAQHGDHAVASDAPLVLVACSGGRDSMALA AVSHIVCTSMGVRCGVVIVDHGLQEGSEQVAGEAADRCRALGLGPVIVRNATVQARGEGL EAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLLRSRGVDALAGMPQVFTRS GVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDGELPDDYPLRSRVRHDLLPAIE RFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTAVDRPASSAAVSTDTPRACAAD DTNDSGHGIGLMIGVKRIAREPEAIRLRVIAHALSQAGVNASAAQIAAIDRLVVDWHGQG GVSLPRGYSANRKKHVIRVCQDGAHANR >gi|316916421|gb|ADCN01000013.1| GENE 59 64453 - 65943 1204 496 aa, chain - ## HITS:1 COG:Rv3627c KEGG:ns NR:ns ## COG: Rv3627c COG2027 # Protein_GI_number: 15610763 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Mycobacterium tuberculosis H37Rv # 105 493 85 454 461 90 30.0 7e-18 MVSTAVSRRQRREAQRRTQRSHRRTLTVIISALTTIALFAGYCAADITDVAPGLLTLKPV TAPVFANPATAKSGGTIAGALNANKAIDSTAASALVNELLSTQGVGNDASVIIEDAQGTV AAEHESNTPREPASTLKTLTALAASSTLNMASTLDTQVFLTQSDDGTNTLTLKGNGDMLL SAGDSDANHTNGRAGLNTLAKATVAALAQRGITSVNLEYDDTLFGDSRIPAGLSEGGAVL SDYTVYFTPVSSMAIDGGRQYTADTPAPADPDDSAGYPELSQHTASDVATKFAELLQSNG VAVTGDVTANTAPSDETPLASVSSATLSEIMAYTLRHSDNTLAEEFGRLTALAKSATNSP EGGTEAVKSTLNDLGLDTSGLTMADCSGLSPGSRLTVRTLAAVQQRNLTTKSGAAGAEGL SIAGLVGTAQDRYTDDAVAGLLRVKTGSLGTVTSMAGNVSRTNGGALSFAVVVNNPEDYA AARSAIDSFITKLAGL >gi|316916421|gb|ADCN01000013.1| GENE 60 65966 - 67639 1935 557 aa, chain - ## HITS:1 COG:no KEGG:BLD_1844 NR:ns ## KEGG: BLD_1844 # Name: not_defined # Def: hypothetical membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 557 1 557 557 926 99.0 0 MISSAITLVRLRWTLTLATLRKSAWQTVAYVFSAVLAAGTIIGTGVLAWFIGILPPFTVN ADGFPLNILGSGGIVNIVVVLVGATMTIFIGFIQLMMLGEGSTMNPRKFALYGIADRNLQ FGLLLSGLSGIPALTGVASLMLWTLAYRHMGPAVIISSLLAAVLAVITMMGISKLLIALS TTLVTSKRGKGAFYIFIVLTFVIICQLPNILVNSGVAFSLNTETWGAATTIVAWTPFGAA FQLPFDALTGAWAVLLARIAILAVTWIVCFAVCTWCLRHERLTIGANSPSETAKGIGAFA WMPDSASGAVSARLITYLKRDPRQAMTFAMPVLFLIIFAFQAHGISAVVWQSLIWCGWFM SVVESNGLAYDGRGFTMEVIAGVRGRTDRIGRVRVYVGIMVVYMVLLYLAGIVLVGALTG RWAQPDDLATGLIFLATGMGIALSGLGVAEVTSCVLMYPVASMDKPFSAPQGRAMAQGFF PFVYMLGSLLLMLPTGIVALVMLLTGAEGGMWLAIIPVALANGIGILALGTWLGGKLMDA RMLSIVATLDSFASLQK >gi|316916421|gb|ADCN01000013.1| GENE 61 67636 - 67992 381 118 aa, chain - ## HITS:1 COG:Cgl1972 KEGG:ns NR:ns ## COG: Cgl1972 COG1131 # Protein_GI_number: 19553222 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Corynebacterium glutamicum # 1 92 184 276 285 82 47.0 2e-16 MDPVSSANLKDILIEYAKTGGTVIISSHVMALVEKMCTHVAVINNGLVCAAGTVDEVAAG EELEDRFLQLVGGRHEAAHLAWLDGGQAQAQAPTSVQPVQPIPLTTATPATPTDEARR >gi|316916421|gb|ADCN01000013.1| GENE 62 67923 - 68600 485 225 aa, chain - ## HITS:1 COG:Cgl1972 KEGG:ns NR:ns ## COG: Cgl1972 COG1131 # Protein_GI_number: 19553222 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Corynebacterium glutamicum # 28 191 7 171 285 159 51.0 3e-39 MSLDNTQRNVGFQPPMMPAAAPAPAQPSQPQPQAWPPNPNAAVSIRGLFKHFDRKIAVNG LALDIPVGSFYGLVGPNGAGKTTTLNMVTGLLVPDAGTAMILGHDVWSDVNTAKRMIGVM PQPDQIFDRLTGLQLLVYSGMLRGMSRDETTRRAQDLLNAFDLAGAANTMVTDYSAGMTK KICLASAMIHSRAFWSWTSRLNPWTRCPAPTSKTSSSNTRRPAAR >gi|316916421|gb|ADCN01000013.1| GENE 63 68696 - 69919 1682 407 aa, chain - ## HITS:1 COG:CAC1691 KEGG:ns NR:ns ## COG: CAC1691 COG1215 # Protein_GI_number: 15894968 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 46 405 49 412 425 222 34.0 1e-57 MTLLSVLDILLMIVGGAGMIYQGLCIVMSLFAKPVRFPDAPMTNRYAVLISARNEEKVIG NLIGSIRDQTYPSNLIDIWLVADNCTDNTADVVRSLGCHVVERHNLELVGKGYALTYLLG HMLDIGVADDYEAYFVFDADNKLDKHYFEEMNKAFCSGFKILTSYRNSVNLADNWVSSGS ALWFIRESRFLSNSRMILGSSCHVGGTGFMFSREVMKRNKGWKFHLLTEDLEFTMDSILH GDRIGYCGTAILYDEQPVTFSQSWRQRLRWSKGFLQVFRYYGSALLKRAVRERDFSCIDF TLMLCPFTVLGAIRAVMGLLFAACGFVSWPSQLQSLADWSSGIIISVLGLMALAALTIIV ERDQIGATNKELLAYVLSFPIYILSYVPISFQAIFAKAQWKPIAHKG >gi|316916421|gb|ADCN01000013.1| GENE 64 69919 - 71433 1825 504 aa, chain - ## HITS:1 COG:Cgl2741 KEGG:ns NR:ns ## COG: Cgl2741 COG0628 # Protein_GI_number: 19553991 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Corynebacterium glutamicum # 19 395 60 429 476 98 26.0 3e-20 MSERVRNVNSTDTLRTGAAEAGADPDDENRIDFGTLFPAKGDSRRPPEWFGRALLYVALA VIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAHGWKRGVASAVSLVGVAVVV GVLLTLFGNMFVQQMIAMVRGLPAMYEQIREFVDQYATFKMPEISNLGMEIFNNIQTSWV TDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRFLLVWTV AQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGTYIGGAL PVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLAFGSLFG AFGAFLALPVTASLQAIFRAYTKRYELIDSPLMNDPTPEKKSKIVEASEAFGEHVLQPIG EHMPRAAKGSTSRVPMNEELRLLQEQIYAIPPHETKESDLDDSATVAIPQRGAADTQQSE QPEQRKQTKQSDQSASSNPRAGWR >gi|316916421|gb|ADCN01000013.1| GENE 65 71509 - 72435 984 308 aa, chain + ## HITS:1 COG:Cgl0614 KEGG:ns NR:ns ## COG: Cgl0614 COG0463 # Protein_GI_number: 19551864 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Corynebacterium glutamicum # 4 239 9 243 251 94 31.0 3e-19 MLNVSIIIPAWNEAERIRDCLLNATRQTIMPHEVLVVDNRSTDNTCAVVEQFIAEHPEAP VKLLHQNDEQGLIPTRNFGLNAATGDVLGRFDADCMIRPDWVEVVSGIFTEDPAAMGATG PVMYYDMPSRHFGLKGDNSLRKRIYRADGGQPLLFGSNMALRASAWHQIVNEVCRDKADV MHEDIDISLHLMGKDLKTVYSPRMIAAMSARRMDTSLSSFLSYMRRFKNTFDAHPQHTRT HKPEVLFTAMYPAMHMFYPVWQKVLNSADINPAEAAWINEQMELAEAQGKQLYDETPTDE VYDEKHEK >gi|316916421|gb|ADCN01000013.1| GENE 66 72658 - 73809 2026 383 aa, chain - ## HITS:1 COG:ECs3659 KEGG:ns NR:ns ## COG: ECs3659 COG1454 # Protein_GI_number: 15832913 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1 381 2 381 383 420 56.0 1e-117 MVYRMIFNQTAYFGRGAIKEIPAVAKQHGFTKAFIVTDPVLLETGTAEKVTKVLDEAGLP YEVFSNVKPNPPVECIKDGVAKFAESGADFLIGLGGGSPQDTCKGIGIITANPEFADVLS LEGVADTKNPSVPIFGVPTTAGTASETTINYVVTDTANKRKFVAVDPHDIPIVAFVDPDL TDSMPRGLKVATGLDALTHAIEGYITPGAWSLSDCLSMQTIRMIAKNLAKSADGDIPAGE QMAYASYITGMAYSNVGLGLVHGMAHPLGGRLGVAHGVANGILLAPVMEYNKDFTGEKYR DIADAFGVEDAYTGDLEKVREEAVQAVHKLTVDLKNPTTISEVGATEADLEPLAHDAFND VCTPGNPRQATEEDILAIYKSLM >gi|316916421|gb|ADCN01000013.1| GENE 67 73979 - 74191 56 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239621568|ref|ZP_04664599.1| ## NR: gi|239621568|ref|ZP_04664599.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 70 1 70 70 95 98.0 1e-18 MSIDQTSSIARNLNDKTIFRSHLTLSEKLVSHPLTSRVAQSICEMPNSIRASSAERELVH QMVYSTVSVS >gi|316916421|gb|ADCN01000013.1| GENE 68 74249 - 75553 1629 434 aa, chain + ## HITS:1 COG:ML2334 KEGG:ns NR:ns ## COG: ML2334 COG2230 # Protein_GI_number: 15828257 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Mycobacterium leprae # 22 432 15 418 420 367 45.0 1e-101 MANGKAMTVGEMASLFLDPATPVRIDAFDGSHFGPADADLKVKIATPNCMYQLLAHPNEI GIVRSYILGDFDVDGIDYADPYPAMRKLVSLSKYVRPLTPTSIARVSAGILSHGFKKPPV PATEGPSKFARIKRGLMPHTEKADSETVSFHYDMSNEFYADFLGPSMTYTCAVFDNEHMS LEDAQANKLRLILDKLDLQPGQHLLDIGCGWGSMVITAARRGIKALGVTLSKEQAAYANE WIAREGLQDLAEVRVQDYREVPEHDFDGICSIGMMEHVGVKNYQSYFEEMFRLLKPMGRL LNHQITISHDKPHGKPGTDEFLDRYIFPDGDLGAPGFIESCIHDAGFNVVHQENLRQHYA LTLHHWNQNLSEHWDDAVKQVGFERAKVWGMYMAACALNFELDGIQIHQFLAVKPDRVGH PDGKWYPLRQWWQA >gi|316916421|gb|ADCN01000013.1| GENE 69 76494 - 77507 1708 337 aa, chain - ## HITS:1 COG:all4713 KEGG:ns NR:ns ## COG: all4713 COG1087 # Protein_GI_number: 17232205 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Nostoc sp. PCC 7120 # 2 321 7 328 332 255 44.0 1e-67 MTVLVTGGCGYIGAHVVHALHQAGEKVVVVDDLSYGKPTRIEGSRLYGMDIAAPGADERL AEILDAEGVDSVIHFAARKQVGESVEKPLWYYQQNINGMLNVLTGMTQSKNAKKLVFSSS AATYGVPPVDVVPEDVVPMLPINPYGQTKLFGEWMARACEQPFGIRFCALRYFNVAGCGP VELEDPAILNLIPMLFNRLKQGKAPAIFGDDYPTPDGTCVRDYIHVSDLADAHIAALKYL DRDERKYDAFNVGTGEGTSVRQIVDEVKKVTGLPFTEAVMARRAGDPPHLIGSPKRINEE MGWHAKYDVEDIVKSAWDAWQANPEHHIDVDTWKQAD >gi|316916421|gb|ADCN01000013.1| GENE 70 77835 - 78695 1287 286 aa, chain + ## HITS:1 COG:STM3109 KEGG:ns NR:ns ## COG: STM3109 COG0220 # Protein_GI_number: 16766410 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Salmonella typhimurium LT2 # 26 283 16 238 239 139 35.0 6e-33 MTDPESTAIDSVTAMAADHTEAPAHPLHKVLSFVRRSGRLDDRLQRAWDNYADTYLLDIA AGNLLDVREGVTLDRAFVESAWGNDNPLIVEIGTGQGENVVAAAAAHPKTNFLALEVYDP GVAHTLLLAGKQGLTNIRVAQVNAPELFKVTAPGTAAEVWTFFPDPWPKKKHHKRRIVQE AMAGDIHRALAADGVWRIATDIEDYALHVHEVMDGLDGWKNLGSVTVSLPLEHVGKGNAD MAADMPHADFTESERFEGRVLTNFEKKGLAAGRVIHDFTYQAVALN >gi|316916421|gb|ADCN01000013.1| GENE 71 79132 - 79935 1039 267 aa, chain + ## HITS:1 COG:BS_azlC KEGG:ns NR:ns ## COG: BS_azlC COG1296 # Protein_GI_number: 16079724 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Bacillus subtilis # 6 237 20 248 254 254 56.0 1e-67 MADTANTNTNAWLPALKAAFPLTIPICLGFLFLGASYGILMGTKGFSFVWPMCMSAFIFA GSMEFVTVNLLLSAFNLLAGFLLALMVNARHLFYGLSMLGKFKGLGWKRPYLIFGMCDET FAINSTAKIPAGIDRGWFYFWVTLCNQLYWVTGATLGGLIGAHLPFNTDGLDFVLTALFL VIFLDQWLDGKHRERLSAVIGVLTSLACLLIFGANDFMIPSMIAMLILFVALRPHLDVLR PAADAPEATANHAMSHAADQQKEGQTR >gi|316916421|gb|ADCN01000013.1| GENE 72 79932 - 80264 539 110 aa, chain + ## HITS:1 COG:BS_azlD KEGG:ns NR:ns ## COG: BS_azlD COG1687 # Protein_GI_number: 16079723 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permeases (azaleucine resistance) # Organism: Bacillus subtilis # 1 110 1 110 110 119 62.0 1e-27 MTMTIWQGAITIVTVVLGTMCTRFLPFLVFPESKQPPRIIEYFGQVLPYAMTGLLVVYAL RNTPILTGSHGLPELIACTVIVLLHVWKRNMLLSIAGGTIVYMLLVQLVF >gi|316916421|gb|ADCN01000013.1| GENE 73 80443 - 80961 698 172 aa, chain - ## HITS:1 COG:MT2293 KEGG:ns NR:ns ## COG: MT2293 COG0394 # Protein_GI_number: 15841726 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Mycobacterium tuberculosis CDC1551 # 4 172 2 157 163 98 39.0 5e-21 MSNTQPYTVMTVCTGNICRSPMGEIILRHFFNERGLGDQVNVESSGVSDEEWSHPIDPRA VRVLRERGYGDEIPRDHFAHRISREEIDRTDLFLPMTASHMRALLRMLPAGKRAEVHMYR SFDPNLPKPKPGREDQIDLVDPWYGGKHEFEVAIDQIEEVAPYIVDWVAKQL >gi|316916421|gb|ADCN01000013.1| GENE 74 81085 - 81747 869 220 aa, chain - ## HITS:1 COG:BMEI0609 KEGG:ns NR:ns ## COG: BMEI0609 COG0262 # Protein_GI_number: 17986892 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Brucella melitensis # 54 181 18 139 172 120 47.0 2e-27 MEHDSSRSGYHEPEPGSAGLSATEEDWGDDYPKTFSVNLIWAEARDKEGRAGAIGLNGGM PWHCAEDMKHFKELTVSHPVIMGRKTWESLGGKCRPLPNRDNIVVSHDPMYRAPGATVVT SLDDALDMARQEAIPDDGLDRSEIWIIGGAQLFAKALPFADKAYVTDLAATVDADSYAPD MASLVEAGMWREAEVGEWHTPAKEESGIDSYRFRILAKTK >gi|316916421|gb|ADCN01000013.1| GENE 75 81739 - 81879 80 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHFAYSSWIAELGLSVVDSEDSGAVTFTVFAVHETVISIRPQQVP >gi|316916421|gb|ADCN01000013.1| GENE 76 81857 - 82729 1164 290 aa, chain - ## HITS:1 COG:MT2834 KEGG:ns NR:ns ## COG: MT2834 COG0207 # Protein_GI_number: 15842302 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 23 290 3 266 266 394 69.0 1e-110 MALTEEQLADIRSRIPARPETDIPMPYEDLVRKILTEGTLKSDRTGTGTISLFGQQMRFD LSKYFPLLTTKTVFFKGLAYELLWFLKGSSNINWLLEHNVHIWDEWADENGDLGPVYGVQ WRSWPAPTPEDPNRTIDQISNVLDLIKHHPDSRRMIVSAWNPAEVEKMALPPCHALFQFY VADDKLSCQLYQRSCDMFLGVPFNIASYSLLTMMMAQQAGLKPGEFVWTGGDCHVYDNHV DQFLEQLGRKPYPYPTIEIRKADSLFDYQYEDFKVVGYQHHPTIKAPVAV >gi|316916421|gb|ADCN01000013.1| GENE 77 82778 - 83206 199 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 2e-14 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 12:45:08 2011 Seq name: gi|316916369|gb|ADCN01000014.1| Bifidobacterium sp. 12_1_47BFAA cont1.14, whole genome shotgun sequence Length of sequence - 63990 bp Number of predicted genes - 57, with homology - 52 Number of transcription units - 36, operones - 13 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 429 347 ## COG2826 Transposase and inactivated derivatives, IS30 family - Prom 574 - 633 3.8 2 2 Tu 1 . + CDS 598 - 1011 703 ## COG1765 Predicted redox protein, regulator of disulfide bond formation + Term 1030 - 1063 6.1 - Term 1014 - 1055 8.1 3 3 Op 1 . - CDS 1070 - 2107 1264 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 2146 - 2205 2.3 - Term 2210 - 2243 4.5 4 3 Op 2 . - CDS 2276 - 3010 190 ## PROTEIN SUPPORTED gi|145223395|ref|YP_001134073.1| NLP/P60 protein - Term 3089 - 3142 8.2 5 4 Tu 1 . - CDS 3165 - 3911 680 ## BLJ_1662 NLP/P60 protein 6 5 Tu 1 . - CDS 4124 - 5080 793 ## COG3942 Surface antigen + Prom 5093 - 5152 2.7 7 6 Op 1 . + CDS 5180 - 5404 157 ## 8 6 Op 2 . + CDS 5473 - 6615 1399 ## COG1932 Phosphoserine aminotransferase + Term 6695 - 6737 7.9 9 7 Tu 1 . + CDS 6746 - 7000 346 ## Blon_2149 hypothetical protein 10 8 Tu 1 . - CDS 7007 - 8191 1577 ## COG0642 Signal transduction histidine kinase - Prom 8335 - 8394 3.9 + Prom 8294 - 8353 4.2 11 9 Tu 1 . + CDS 8391 - 9065 1068 ## COG0704 Phosphate uptake regulator + Term 9134 - 9181 8.5 - Term 9371 - 9409 8.4 12 10 Op 1 . - CDS 9442 - 10182 1193 ## COG0588 Phosphoglycerate mutase 1 13 10 Op 2 . - CDS 10242 - 11207 1018 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Term 11218 - 11259 10.8 14 10 Op 3 . - CDS 11269 - 12951 2791 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 13174 - 13233 79.0 + TRNA 13156 - 13232 80.2 # Pro CGG 0 0 + Prom 13158 - 13217 79.3 15 11 Op 1 . + CDS 13452 - 14642 1427 ## COG2814 Arabinose efflux permease + Prom 14644 - 14703 1.8 16 11 Op 2 . + CDS 14729 - 17092 2353 ## COG0457 FOG: TPR repeat 17 11 Op 3 . + CDS 17168 - 17800 635 ## BL1650 hypothetical protein 18 12 Tu 1 . - CDS 17950 - 19551 1062 ## BL1649 hypothetical protein 19 13 Op 1 . - CDS 19655 - 20362 411 ## BL1648 hypothetical protein 20 13 Op 2 . - CDS 20392 - 22113 949 ## BL1647 hypothetical protein 21 14 Op 1 19/0.000 + CDS 22227 - 23510 1206 ## COG4585 Signal transduction histidine kinase 22 14 Op 2 . + CDS 23507 - 24205 715 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Term 24202 - 24239 8.7 23 15 Op 1 4/0.000 - CDS 24250 - 25272 1607 ## COG1087 UDP-glucose 4-epimerase 24 15 Op 2 . - CDS 25342 - 26889 1597 ## COG4468 Galactose-1-phosphate uridyltransferase 25 15 Op 3 . - CDS 26936 - 28015 1464 ## BLD_1766 putative homoserine kinase type II 26 15 Op 4 . - CDS 28044 - 30299 3224 ## BLJ_1683 hypothetical protein - Prom 30323 - 30382 2.9 27 16 Tu 1 . + CDS 30186 - 30404 108 ## - Term 30327 - 30355 1.0 28 17 Op 1 38/0.000 - CDS 30515 - 31465 1290 ## COG0395 ABC-type sugar transport system, permease component 29 17 Op 2 35/0.000 - CDS 31465 - 32436 1318 ## COG1175 ABC-type sugar transport systems, permease components - Prom 32467 - 32526 1.6 - Term 32506 - 32551 7.1 30 17 Op 3 . - CDS 32627 - 33943 2171 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 33989 - 34048 4.4 - Term 34179 - 34225 -0.4 31 18 Tu 1 . - CDS 34298 - 34453 234 ## BLJ_1688 hypothetical protein - Prom 34589 - 34648 4.8 - TRNA 34680 - 34767 63.7 # Ser TGA 0 0 32 19 Tu 1 . - CDS 34947 - 36233 2206 ## COG0172 Seryl-tRNA synthetase 33 20 Tu 1 . + CDS 36467 - 37648 1533 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase 34 21 Op 1 7/0.000 - CDS 37653 - 38492 905 ## COG3711 Transcriptional antiterminator 35 21 Op 2 . - CDS 38510 - 40891 1882 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 41119 - 41178 2.7 + Prom 41162 - 41221 2.4 36 22 Op 1 . + CDS 41342 - 42895 2009 ## COG0477 Permeases of the major facilitator superfamily 37 22 Op 2 . + CDS 42983 - 44659 2637 ## COG0033 Phosphoglucomutase + Term 44697 - 44743 9.0 38 23 Tu 1 . + CDS 44914 - 45267 111 ## BL1629 hypothetical protein - Term 45144 - 45180 -1.0 39 24 Tu 1 . - CDS 45389 - 46477 460 ## BLJ_1704 hypothetical protein - Prom 46656 - 46715 4.6 + Prom 46604 - 46663 5.6 40 25 Tu 1 . + CDS 46717 - 47139 368 ## BL1627 hypothetical protein - Term 47076 - 47138 1.2 41 26 Tu 1 . - CDS 47158 - 47304 64 ## 42 27 Tu 1 . + CDS 47273 - 48889 1443 ## COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes - Term 48774 - 48812 -0.9 43 28 Tu 1 . - CDS 49048 - 49200 189 ## BLJ_1707 hypothetical protein 44 29 Tu 1 . - CDS 49407 - 49523 89 ## + Prom 49249 - 49308 2.0 45 30 Op 1 . + CDS 49522 - 50412 498 ## COG0328 Ribonuclease HI + Prom 50428 - 50487 2.3 46 30 Op 2 . + CDS 50543 - 51241 1236 ## COG0120 Ribose 5-phosphate isomerase + Term 51269 - 51309 10.3 - Term 51326 - 51370 12.1 47 31 Op 1 . - CDS 51394 - 51483 185 ## - Prom 51522 - 51581 5.3 - Term 51504 - 51544 -0.3 48 31 Op 2 . - CDS 51675 - 52307 742 ## BL1621 hypothetical protein - Prom 52390 - 52449 2.0 49 32 Tu 1 . + CDS 52435 - 53973 1290 ## COG1066 Predicted ATP-dependent serine protease + Term 53989 - 54019 -1.0 - Term 53821 - 53871 -0.7 50 33 Op 1 12/0.000 - CDS 53988 - 55112 290 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 - Prom 55146 - 55205 2.9 51 33 Op 2 26/0.000 - CDS 55210 - 56373 713 ## COG0130 Pseudouridine synthase 52 33 Op 3 32/0.000 - CDS 56375 - 56851 859 ## COG0858 Ribosome-binding factor A 53 33 Op 4 20/0.000 - CDS 57002 - 59929 3207 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) - Term 60151 - 60190 -0.3 54 33 Op 5 . - CDS 60199 - 61266 536 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 55 34 Tu 1 . + CDS 61342 - 62202 763 ## BLJ_1717 hypothetical protein - Term 62038 - 62067 1.2 56 35 Tu 1 . - CDS 62243 - 63286 679 ## COG1609 Transcriptional regulators 57 36 Tu 1 . - CDS 63503 - 63985 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916369|gb|ADCN01000014.1| GENE 1 3 - 429 347 142 aa, chain - ## HITS:1 COG:Ztra8.2 KEGG:ns NR:ns ## COG: Ztra8.2 COG2826 # Protein_GI_number: 15802345 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli O157:H7 EDL933 # 6 142 71 184 396 61 34.0 6e-10 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCPETIY >gi|316916369|gb|ADCN01000014.1| GENE 2 598 - 1011 703 137 aa, chain + ## HITS:1 COG:MT2992 KEGG:ns NR:ns ## COG: MT2992 COG1765 # Protein_GI_number: 15842468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Mycobacterium tuberculosis CDC1551 # 4 133 3 132 137 70 33.0 6e-13 MGKRLWVERNKDGSWDAFSDDGAHIKFGKDRGQFTPGDLMKVALAGCAALSSQFAIEHTL GEGKGAKIVVDGTYDPENDAYTGFEEQVVIDASDAGLSEEDADKLKERVTRHIDKGCTVK HTYVQETPVRMNVTVKH >gi|316916369|gb|ADCN01000014.1| GENE 3 1070 - 2107 1264 345 aa, chain - ## HITS:1 COG:Cgl2878 KEGG:ns NR:ns ## COG: Cgl2878 COG0589 # Protein_GI_number: 19554128 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Corynebacterium glutamicum # 1 287 1 293 301 119 33.0 6e-27 MINDKAILVGVDGSHASYKATWWAANYAKHAGLTLQIVCAYSLPSYAAVSFDATYTAMGD DNAAHSDAQEILSKAKAIADEQGVEAATLIVTGDPASVFVELSRNYNLIVIGNRGKGGLA ERLLGTTSSSLPAYAYCPIVVVPYTDDDGNLMHLNNTITKVAVGSDESKWGLKALDIAAD FATCWGAELDVISAVPNLKGVDGEDAVMESYKDDLEVRIKPLQESHPDLKINKQIVSGPA VSALTKASYDHDVVVVGSRGRGGFTGLLLGSTSQGLLQHAVGPVYVVPRKYVEAAESRLD TVPSSPAEVPTKSLEEIAGVEEIPVSAAEPEVAQQIEKTIDPDRQ >gi|316916369|gb|ADCN01000014.1| GENE 4 2276 - 3010 190 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145223395|ref|YP_001134073.1| NLP/P60 protein [Mycobacterium gilvum PYR-GCK] # 29 242 143 347 348 77 30 1e-13 MTNVKNIISTSVAVIATGAMFACVAPFASADSAQTSAVVSSRSFPKASSVKKNLFAESTS TSVDENSKWGGIETLDVPQTESQAEKEAVAAAAAQKAADEAAAAQSAAAAASRSEQRASI PQVDLGKMTGTGAELASFSLKFQGYPYVAGGNTPAGWDCSGFVQYVFSQFGISLPRTSGA QATVGTPVASLADAKPGDILANGTHAAIYIGNGQVMNAMNPVQGTAVSDVSVFGGAGYSI RRVM >gi|316916369|gb|ADCN01000014.1| GENE 5 3165 - 3911 680 248 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1662 NR:ns ## KEGG: BLJ_1662 # Name: not_defined # Def: NLP/P60 protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 248 1 248 248 381 96.0 1e-104 MKTKTVASSIVAAIVSCACSFMFVPTATAAEGVTVTSTKSFPSYTQVRKDLTTEATATNV EDNADWGGIENLDVPQTESQAEKDAAAAKKAAEEEAKKQTEAEAQATQKQANAASRNESR SSVTYSDASGLVSAGAGASIDRAYSLIGQSMDCTALVSQALAARGINFHGWPEEYVNVPG GHVVTDGSLQPGDILIYANTGGWNGGAHYDHVALYVGNGQAVHGGWNGYSVALASAMTEK LTIVVRIP >gi|316916369|gb|ADCN01000014.1| GENE 6 4124 - 5080 793 318 aa, chain - ## HITS:1 COG:SPy1801 KEGG:ns NR:ns ## COG: SPy1801 COG3942 # Protein_GI_number: 15675636 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 83 316 251 497 503 115 36.0 1e-25 MKHASHKATTVSRQKFSLAKALFASGKGSHSVRAVRAVQSAGSDAVVLGLDPAIAEKINE IAPQTRRSIREAARAAERRSHILASASLAALVGTAAGALAFSNNEDATNSFVADPATTTT QIKRISDVTAASRSEARTDLSSSSVTAQSTNEGGWGLSNSDSTLDAKLMNRNNANNPVVS ALVDADGDAVPAGFNPNHAVGTNSNNYPWGQCTWYAYQRRAELGLPSSGNFGNGGEWAAS ASALGYWVDNTPRHVGDAVVFAPGQANADGTYGHVAVLEKINADGSIEISESNAKGLGVI STRTFSAAEAGKFQYVHY >gi|316916369|gb|ADCN01000014.1| GENE 7 5180 - 5404 157 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSPTIRACQTIYVTVRQGEKLPCFRPFTNLTIRLSEESLTHVIPTHRSHDALRTFCTAF RIAATTARHPGIPQ >gi|316916369|gb|ADCN01000014.1| GENE 8 5473 - 6615 1399 380 aa, chain + ## HITS:1 COG:ML2136 KEGG:ns NR:ns ## COG: ML2136 COG1932 # Protein_GI_number: 15828146 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Mycobacterium leprae # 1 380 5 376 376 414 56.0 1e-115 MTITLSIPESLKPEDGRFGSGPSKIRPEQIAALDAGATTLLGTSHRQAPVKQLVASIREG LREFFHLPEGYEVALGNGGASAFWEIACASLITRRAAFGTYGSFSAKFAASAANAPFLED PVLFPGEPGTYRLPELTEGVDTYCWAHNETSTGVAAPIRRVPGSREAGALTVIDGTSAAG ALPVDISQTDVYYFSPQKAFGADGGLWVAILSPEAIDRAACVESSAHLEGAHRWVPPFLS LTTALNNSRKDQTLNTPAVATLIMMENQIRWLNSNGGLAWATTRCAKSASILYSWVERSE YAAPFVVDADARSNAVVTIDLDERVQASQILSILRENGIVDAAGYRKLGRNQLRVGVFPS VEPADVMAFTKCVDYVVEHL >gi|316916369|gb|ADCN01000014.1| GENE 9 6746 - 7000 346 84 aa, chain + ## HITS:1 COG:no KEGG:Blon_2149 NR:ns ## KEGG: Blon_2149 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 84 3 86 86 134 100.0 9e-31 MKFAPLIDPAVRKPAPKPVRVDLRKVFAIGTGLWIVALIVVLILLAVGYSVMPLVIMCVA GVIIGLLLLIWEYFDRWDYRRLGQ >gi|316916369|gb|ADCN01000014.1| GENE 10 7007 - 8191 1577 394 aa, chain - ## HITS:1 COG:ML2440 KEGG:ns NR:ns ## COG: ML2440 COG0642 # Protein_GI_number: 15828318 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mycobacterium leprae # 8 393 4 377 441 156 33.0 6e-38 MPLVAAIALIVAAVLFVVGIITLIVGFATHRVSVESPLADDDDNDDLSDDTATLLSMLPG ASVVVDEHDEVVRCNPAAYRLGVVSDDAIAQQQVLDAIHEARKSGGKRQFDLTTDTPERY VADQNKGDHVATQSVHRPNWLKVTVGRINEQFVIVLITDVSDVIRFAQVRDSFITNVSEQ LLGPTEALAKLADSLESGNLDEQQVAADARQVRSSCSKLNHMVSDLLLLIRAQEPITPSS ANRLNVMEQLEATVARLEPQAAAAGVQLNIKGDDDLVINGEADQIDSAVTKLIENAIGYS KENGVVSVSASKDKDGDRAVIRVIDQGAGIAKKDQARIFERFYRGAEQSNRTADGVGLGL AIVKHVALTHHGDVTVWSAPGQGSTFSLTLPLAQ >gi|316916369|gb|ADCN01000014.1| GENE 11 8391 - 9065 1068 224 aa, chain + ## HITS:1 COG:MT3400 KEGG:ns NR:ns ## COG: MT3400 COG0704 # Protein_GI_number: 15842892 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Mycobacterium tuberculosis CDC1551 # 1 214 1 216 221 120 35.0 1e-27 MRVIFNEELKQVADDLDRMAQNVRKAIKGAGEALLNQDVEAAQTVIDGDIEIDALESSVI DQCVKLLAKQNPVATDLRVVVSTMRLASTFERMGDLARHVAEAARRTYPAAAIPESAQPV FAEMIDFLDNTADQLVAMLSDRDAKTAEAIILADDKLDNLHHQTFDLALSDDITRQQTVD IVLLGRFLERLGDHAVSAARRVVYIVSGFDPTKEPTRDEGTDID >gi|316916369|gb|ADCN01000014.1| GENE 12 9442 - 10182 1193 246 aa, chain - ## HITS:1 COG:Cgl0397 KEGG:ns NR:ns ## COG: Cgl0397 COG0588 # Protein_GI_number: 19551647 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Corynebacterium glutamicum # 4 246 5 248 248 315 69.0 4e-86 MTYKLVLLRHGQSAWNKTNQFTGWVDVPLTEQGEAEAKRGGELLKEKNVLPDIVFTSLLR RAINTANIALDAADRLWIPVQRDWRLNERHYGALQGKNKTEIREEYGDEKFMLWRRSYAT PPPEIDPNDQYAQNNDPRYAGDPVPEAECLANVVERVKPYFESAIEPELKAGKTVLIAAH GNSLRAIVKMLDNLSEEEIAKVNIPTAIPLLYELDENFKPIKPRGEYLDPEAAAAGAAAV AAQGQK >gi|316916369|gb|ADCN01000014.1| GENE 13 10242 - 11207 1018 321 aa, chain - ## HITS:1 COG:Cgl0443 KEGG:ns NR:ns ## COG: Cgl0443 COG1575 # Protein_GI_number: 19551693 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Corynebacterium glutamicum # 6 270 16 245 298 177 43.0 3e-44 MSIGLWVRGARPKTLATSIASVMVGAAMAYVHIEQSGTCIAIYPEPASCATAREQQTLLM DRFWPVTILCLLVALFLQIAVNYANDYSDGIRGTDAGRDTDESKSGKPQRLTASGLVPAK HVLFAAMICAAIACICGIAAIVISQAWWLFAVGVASLLAGWFYTGGKHPYGYVGLGEVGV FLFFGLAAVLGTEYALCGTVDVGGLLGAVAAGLFSCLIMMVNNIRDIDEDREHGKCTLAV RLGESGARTLLIVCCVAAWAIALLMCATLWWPWGAVLLISGVGIPVRMVSSVNKRQFRPA LPAASFQTLLFAVVLAVSVTL >gi|316916369|gb|ADCN01000014.1| GENE 14 11269 - 12951 2791 560 aa, chain - ## HITS:1 COG:Cgl2631 KEGG:ns NR:ns ## COG: Cgl2631 COG1190 # Protein_GI_number: 19553881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Corynebacterium glutamicum # 64 557 16 523 526 551 56.0 1e-157 MAEVVENTENTENETPAVPQMSTVERAEMLLKQDATIREKIKSGATLDEAVDPSNKEFGP LAHPEQVQMRVAKRAMMLEAGVAPYPVHLDVTDTIEAVRAKYDGKLEAGEETEDMVGIAG RVLFLRNAGGLCFVQLSAGDGTKIQGMISKKEIGADSLKQFKQLVDLGDHLYLKGRVIAS KTGELSVFATEWAIASKALQPLPALHKDLNEDTRTRKPYIGMIADENIRNMARNRSKAVA SLRRTFDDHDFLEVETPMLQTLHGGAAARPFTTHMNAFDLDLYLRIAPELFLKRCLVGGI DRVFEINRDFRNEGVDATHAPEFTMVEAYQAYGTYDSIGQLVKELVQKTAMDVYGSHKVT LLDGTEYDFGGEWKTISMYDSLSESLGEEIVPNGGPDAPGTSVEHLGAIADKLGVERDDV ENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGVVEKWDLYVRGFELAT GYSELNDPIVQRERFVAQAKDALAGDEEACDIDEDFLEALGVGMPPAGGMGMGIDRLLIA LTGATIRETITFPLVKPLVG >gi|316916369|gb|ADCN01000014.1| GENE 15 13452 - 14642 1427 396 aa, chain + ## HITS:1 COG:araJ KEGG:ns NR:ns ## COG: araJ COG2814 # Protein_GI_number: 16128381 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 376 1 375 394 221 37.0 2e-57 MKKSLLALASGAFILGAAEFVMMGILPQAAAATGVDIPTAGHYISAYAIGVCFGTLILVF GRKVPPKDLIILFMVIALVGNLASAFSVNAAMLVAARFVAGLPHGAFFGTATLIAKTLAE EGKEAQAVSVMVTGQTVANMLGVPAGTLMAEFLSWRLAFGILAAWAAMTIVLASAWIPYV APIKDAGIAGQFKFLTRRGPWVILAAVFTGNAGVFCWWSYVSPWLQKTGGWSSSLVPMLM MLAGFGMVIGGLLGGRLTDHWRHAGAAAIGQSISCLGLLLVLITPGNQPMTAVLTFWIAI GLFFTSAPQQLLMTEAGQGGGELIAGAAVQVAFNFGNAIGSIVGGAMLTTFSMNYRYTGL GGMPLALLAVGLLAFYSWRCETDTDAIHRLRETKVD >gi|316916369|gb|ADCN01000014.1| GENE 16 14729 - 17092 2353 787 aa, chain + ## HITS:1 COG:FN0847 KEGG:ns NR:ns ## COG: FN0847 COG0457 # Protein_GI_number: 19704182 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Fusobacterium nucleatum # 77 469 26 379 599 92 23.0 2e-18 MDEEALLKQFAAQFAHGPDDADDTDAAAAAQGADSTANQVADDADQSPATFDTQQFLNGL DAIFDRHTAATEAGPYLEQAMVDAENAGDEAGLLTVLNETMGFYRSQGRHKENQWIVQRA LELAARMGLTTGTSEAWATTLINCATSMRAAKQYDQAEDLYHQAQSVCRHSLAPTDRRLA ALHNNLSMLYSETNRPDKAELELREALRIIEASSVNPDADIDVSSSHTNLALTLLTEHKL EDAHWHAAKALEIYRTGHLEHSAHYASALAGFAQVCFAERRYADAVTGYRHALAVIEECY GKDTDYWRITADNLRQAEEAAAQAGVTVDNAGVAGDAGALPQSGSRLPNSPAQGKTGANA ASSPSTVSVSTGSAGAAEAVSACPVSGLKLARAFWTQMGKPMIAAKYPQYAGRIAAGLVG HGSECYGFDDAYSQDHDFGPRFCLWLTDEDYAAIGEQLEVDYEALPRKFSVDAQGRVTFE AHARSDASGAFPSAGAGSTVIPDAANAPTPGTATHDTATAESGAASSDVAEAMTTPIDAP LSPVTPRAQGANRRDGVFRIGDFFESITGYHTAPAQTAPHEWLMLQESTLAAATNGEVFA DPTGLFSKTRQGFKNMPDDVRLALISKRLGMIAQAGQYNLPRSLKRGDGAAAWLSIHEFV QATASLVFLVNVPMVVGYMPYYKWQFAALRKMSGSMFALLPNVGEQLETVMRLSSAACYG GAGFGEGGKGAAPAIEKINDIVEQIAVDIVKELKREHLTTSGETFLEWQRPYVEDHIASD DPVLKSL >gi|316916369|gb|ADCN01000014.1| GENE 17 17168 - 17800 635 210 aa, chain + ## HITS:1 COG:no KEGG:BL1650 NR:ns ## KEGG: BL1650 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 210 1 210 210 379 100.0 1e-104 MTNELTDDELREAIVRHEWDQFQRTNNEGGRAACQGNWPVFHQMRLAQFLTWERPLLTSY AADLDAADHVGRNLVTEKYGRMMASTAPENFTKNIEPYIPRLSEERAARQEQVIAQQVAW AKDFRERYPKLGEAMRALTTTEDTPSATSFETYLRGELGTYSDQTFERYEAMIGERAAAS PQRNITEETLLHTVQLGGFDTLEEAEASQA >gi|316916369|gb|ADCN01000014.1| GENE 18 17950 - 19551 1062 533 aa, chain - ## HITS:1 COG:no KEGG:BL1649 NR:ns ## KEGG: BL1649 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 533 1 533 533 986 98.0 0 MKRISVRRVASVIVTAMAMTLVFATLGWAMMPQWNTRPYTKHIVIASADTTITPAHANIP HEGRYRTRETRLSIKTGDGVTLPAVLREPVGAPGPRPACLFIHGSGTSGAEDFGDIANAM ASAGIVTLVPAKRNDNYTVLHRDYPRFAREYGRSLDVLRGRIGVDPAKTGIYAESEGTWI ATILTSKRQDIAFAVLTSAPVFNGREQMAMAVSAYTHEAGAPKPVVKDMAKLMSLDYAPF DLAYADFDADRYLKSLTMPVLVNYGTYDTAMPIEQGAQRIIATANKSGNENVTVRYFAGN HQMRAGEGLFTPNLPLAEGYTQALENWVNGVTAGTKADGWATPQVAGATPHQRFAAPQRT RSGIVGSLGVLAGLMVAGPVLIVMAAILGIGLTVFSWLQTLLAGRRSVATVRAVHATPSE LGAAQRRMLHGIAGLSAGIGTAVMVITGLLYGYMSAVGVSAVLVMPQPRLFAVGWVVLRI ATMLLVVLFAWEMERVWYCRADIVGVRRVICVMVALGTLATLMTLAFWGLFSL >gi|316916369|gb|ADCN01000014.1| GENE 19 19655 - 20362 411 235 aa, chain - ## HITS:1 COG:no KEGG:BL1648 NR:ns ## KEGG: BL1648 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 235 1 235 235 324 98.0 2e-87 MTDETKEFASIEDATPTTAIPSETDATTATTTMVTVDDRTDTTVLPSAADDDETAVLPVP DNHADASVSDVDTQATAASPSPIEPTTDRIALETVADAVEGDGGPIPSADDVLMYAASSA RPPYGQSQTAGKPCQPGGSAKNVQSAKNVQNAKDVKSAKNIQKQSTSAPTVVFGLLGVII GVIALVFGYISPDRMISLFSPNPQLLTAIICAVVGLILVIVAVVWAIVGAVKKRK >gi|316916369|gb|ADCN01000014.1| GENE 20 20392 - 22113 949 573 aa, chain - ## HITS:1 COG:no KEGG:BL1647 NR:ns ## KEGG: BL1647 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 573 11 591 591 1064 98.0 0 MSNPNANPYQPQPQPGPQKNKTSRRFFTWVRSSGLVRGDDRWIGGVCSGIALRLGWSPTL VRALVIVCTLFFGFGAALYALGWFLMPDVRDGHILAEDLIAGQWDWNCLGCFLFLAVAIV IPGAGWGCIALAALALWLLAKSGIRQQEGYGFGASAPRPVSQPVSYPAPQPVSYPAAQPV PQSPLYSAPQPFPQPVSQPVSQTAPSVSQPVSQPVYQSMPSVMPGTVPGAMPGTVPNGPF APDRMNATAYAPTESKRRKPAGPIVVLSILGLTFLSFAGLMGLIWVNDMGIIGIMRLGTI WIAAVCIVMGLVVIILGFRGRRTGGLIPLGLVAGGCALCMTIISGTYGVYYRDLGASGIN TVVSLSQSVSARNSDGMNDVQKDGIFVADASDATFETLQQGVAFSGENYNTDQAIIDWSD WDKTHGPHTVKMLDGKTSISNCPVGTITIAATQAQVHIVLPDSCTYAFGTADSYYSTSSD VGGKYEMVYNNYMGPSFVFFEAESATNGPDHEWLYKESAMPDNGPELKINIPYVVEARVN VVYASDWEGSTFQPLADIYDGNSTSKNTTEQSE >gi|316916369|gb|ADCN01000014.1| GENE 21 22227 - 23510 1206 427 aa, chain + ## HITS:1 COG:Cgl0594 KEGG:ns NR:ns ## COG: Cgl0594 COG4585 # Protein_GI_number: 19551844 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Corynebacterium glutamicum # 37 417 1 352 352 137 32.0 4e-32 MTSSPEPLLPARMPLMRPRQGRWLTGVCKGIALHLGIGVAWIRIAFIALTVLYGAGIIAY VFLWVFMPAGDPVAAAARTVPVNQAPLARGNQPLAAHDDESAAAPESLSEAIQRAPKPAV VALAGFALMATGLLLTSTGADVQIVFPLLVGLGGIALAWMNLSPRGTQLLSMLGGIALIF MGWALYVHNVSIPGWGTSPRRIVASGFVMIVGIVVAVMPWANAMLQRLTHEQALKEREEE RADMTAHLHDGVLQTLALIQLNSEEPTTVFALARSQERELREWLYQERSTSDRSVGAGLK QIAAEVEDEHGKPIEVVTVGDARPSAQTDALLDATRQALVNAVTHGGEPVSLYCEASDTM VEVFVRDHGEGFDMDAIPPDRLGIRESIIGRIKRRGGTVEIVSRAGWGTEVRMHMPIALK AAQGEHR >gi|316916369|gb|ADCN01000014.1| GENE 22 23507 - 24205 715 232 aa, chain + ## HITS:1 COG:Cgl0595 KEGG:ns NR:ns ## COG: Cgl0595 COG2197 # Protein_GI_number: 19551845 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Corynebacterium glutamicum # 9 228 2 227 230 197 50.0 1e-50 MSENETAKIRVAMVDDHEMFRAGVIATLRDSFDIVGQAADVPGSVAMIAQTKPQVVLLDV HVPGGEGGGGAEILAKSRPYSPTTVFLALSVSDAPQDVGSVIRAGAQGYVTKTITGADLI SSIKQVHEGYAVFSPKLAGFVLSTFQGVPAAGSDGGADGAARAHDEELDRLSAREQEVMR LIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAADRRIVW >gi|316916369|gb|ADCN01000014.1| GENE 23 24250 - 25272 1607 340 aa, chain - ## HITS:1 COG:HI0351 KEGG:ns NR:ns ## COG: HI0351 COG1087 # Protein_GI_number: 16272302 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Haemophilus influenzae # 4 338 3 338 338 424 61.0 1e-118 MTTVLVTGGAGFIATHTDIELLNKGYDVISVDNYGNSSPVALERVEQITGKPVKRYDGDV RDEALMERVFAENNIDWVIHFAGLKAVGESVAKPIEYYDNNLYSTLVLLKVMKKHNVKKI IFSSSATVYGTPKELPITEETPTGGTTNPYGTSKLFQEQILRDVHVADPSWTIVLLRYFN PVGAHESGLLGEDPKGIPANLTPYVAKVAVGELREVQVYGDDYDTPDGTGVRDYIHVVDL AKGHVAVIDHIDKEGVFVYNLGTGHGYSVLEVIKAYEKAAGHPIPYAIKPRRPGDIAACY ADASKAEKELGWKAELTIDDMAASSLNWQTKNPNGFRDAE >gi|316916369|gb|ADCN01000014.1| GENE 24 25342 - 26889 1597 515 aa, chain - ## HITS:1 COG:L0027 KEGG:ns NR:ns ## COG: L0027 COG4468 # Protein_GI_number: 15673964 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose-1-phosphate uridyltransferase # Organism: Lactococcus lactis # 8 512 3 490 493 276 33.0 6e-74 MNDQLTEVYASIDALIDYALAHLDLDPRNADWTRNQIFALFRLDSYPGPKTTTSAASVSD VVQDIVGSRSQAPYGEKTPDPLLAAFRAAATTAGLFKPEEGPAYADTIMGILSANPADLD DRFLLVEHRDGGMTAMQWFYDYCVANNYVKRAQLDRNPRFDSHGLTVTINLAKPEFKNMK KAAAGNAVAGGYPKCTICHENEGFAGRDKRTLRTLPVTLGGESWFWQFSPYGYFDQHGIC VNTDHTPMHVDRDTFGHLLDFVDRFPGYFLGCNAALPRIGGSVLAHDHYQGGGELLPMHK AATWAAFTLADYPDAVVEILDWPGTAVRVVSKSRQSIIDVSDIIREAWVGYDDAANGIAS HDADGNRQSALSPSAIITERGYEMSLIFRNNAISDEYPEGIFHAHPEYWPVKQEPIGLIE AQGLFILPGRLVDQLGIVEEALAEGRDLPDEVSEFSLEWGELAETLAGNHDREAIRQAVH DELGSVCYRILGNTAVFKQKATTQTFLESLGFAAR >gi|316916369|gb|ADCN01000014.1| GENE 25 26936 - 28015 1464 359 aa, chain - ## HITS:1 COG:no KEGG:BLD_1766 NR:ns ## KEGG: BLD_1766 # Name: not_defined # Def: putative homoserine kinase type II # Organism: B.longum_DJO10A # Pathway: not_defined # 1 359 1 359 359 712 99.0 0 MTESNEVLFGIASHFALEGAVTGIEPYGDGHINTTYLVTTDGPRYILQQMNTSIFPDTVN LMRNVELVTSTLKAQGKETLDIVPTTSGATWAEIDGGAWRVYKFIEHTVSYNLVPNPDVF REAGSAFGDFQNFLSEFDASQLTETIARFHDTPHRFEDFKAALAADKLGRAAACQPEIDF YLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFD FGDSIRFGASTALEDEKDLSKVHFSTELFRAYAEGFVGELRGSITAREAELLPFSGNLLT MECGMRFLADYLEGDIYFATKYPEHNLVRTRTQIKLVQEMEQKASETRAIVADIMEAAR >gi|316916369|gb|ADCN01000014.1| GENE 26 28044 - 30299 3224 751 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1683 NR:ns ## KEGG: BLJ_1683 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 751 1 751 751 1552 99.0 0 MTSTGRFTLPSEENFAEKTKELAELWGADAIRNSDGTHLDEAVLALGKKIYSAYFPTRAH NEWITLHMDETPQVYLLTARILAESNAVDVPLMDGFFEEQLKPNRDADPHKYWEVVDRTT GEVVDPSGWTLDPGEDTVHVTAAVPMHEYTVSFLAYIIWDPVEMYNHLTNDWGDKEHEIP FDIYHPATRKFVFDTFEQWLKDSPQVNVVRFTTFFYQFTLLFDAKRREKVVDWFGCACTV SPRALDDFEKEYGYRLRPEDFVDGGAYNSAWRVPRKAQRDWIDFLSGFVRENVKRLADMS HAAGKEAMMFLGDQWIGTEPYKDGFEKLGLDAVVGSIGDGTTTRMIADIPGVKYTEGRFL PYFFPDTFYEGNDPSIEGLDNWRKARRAILRSPIGRMGYGGYLSLAAKFPKFVDTVTHIA DEFRDIHDRTGGVAAEGELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGM RVNVRFISFDDVLAHGIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFV GVGEPSSAPRFQAGRFFQLADVIGVDEERYQTLSVDKYFPPVVPDHFITADVPVDPAARE AWEQAGYRIPLSGCGGGQSIKPLGGIDFGEPVLNTYPVNENVTLLRADGGQVQLATNDYG EGRGVYISGLPYSAANARLLERVLFYASHNEDKYAAWSSSNPECEVAHFPEQGLYCVINN TDQPQRTTVTLADGTTEDFDLPDSGIAWREA >gi|316916369|gb|ADCN01000014.1| GENE 27 30186 - 30404 108 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRAVGVADGVRTPQFGEFLGLFGKILFTGQREAAGAGHECSFVGLVIKKLQSDEFVAYKM TGVIAGPGTLTA >gi|316916369|gb|ADCN01000014.1| GENE 28 30515 - 31465 1290 316 aa, chain - ## HITS:1 COG:SPy0255 KEGG:ns NR:ns ## COG: SPy0255 COG0395 # Protein_GI_number: 15674435 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pyogenes M1 GAS # 38 316 8 276 276 134 30.0 2e-31 MSSATVEARARKKAERKLEKQRQAAQHDLPRSMRPSAAVKTFTVVLLVLVLIYFLFPIYW AIIASTKTPAQMTGSNGMWFAVPLDQLPNAIATNYSKLLGWTRGNFWRWVLNSLIYSGVS ALIGTIVSVMAGYATAKFNFRGKNAAIGIIMACMLMPSALLTIPMYSIFHTLHLTNTMLS IIIPCCVSPFGFFLGRTYAQSSVPDELLEAARIDGASEARIFFTIVLRLLAPAMVTIFLF LFVATWNNFLLPLMMVSSDTLKPVTLGLYGMVSLSTFTDRGALMMGALLGVLPVIVLFLG LQRYWQSGLAAGAVKG >gi|316916369|gb|ADCN01000014.1| GENE 29 31465 - 32436 1318 323 aa, chain - ## HITS:1 COG:XF2447 KEGG:ns NR:ns ## COG: XF2447 COG1175 # Protein_GI_number: 15839038 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Xylella fastidiosa 9a5c # 27 268 2 241 293 116 29.0 6e-26 MTASTTQAKGKAPRRAAAKPKRSGAQKRENRTGWAFMAPFAVLFTFVFILPIIWAIYSSF FRQVTEGGGAYGGGELVNKFVGFQNFQYAITSGNFWSGVGRVLIYTLIQVPIMIIAALAL AIVIDSFVVKHVTGFRLGYFLPYAIPGVVASIIWVYLYNGQISPIVKGLAAIGVNVDFFN KNIVLGSMANITTWTFTGYNMLIFLAALQAIPHDLYEAARIDGANGWQIATKIKLPNVRG AALLAMLLSIVGTIQLFNEPQIMSTADPGISKSYTPMMMAMNTSQGTITPSGDGPASAIA IVMALIAGVLAVLYTLAERKVNE >gi|316916369|gb|ADCN01000014.1| GENE 30 32627 - 33943 2171 438 aa, chain - ## HITS:1 COG:SMb21595 KEGG:ns NR:ns ## COG: SMb21595 COG1653 # Protein_GI_number: 16264783 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Sinorhizobium meliloti # 62 344 45 327 410 89 27.0 1e-17 MVSHNKRIVAALAAVAAMGIGLAGCGGSDTAGDTKSGSDGGVVNITYMHRLPDSEGMTLV NDIVAKWNKEHPNIQVKATKFDGNAADMIKKLETDVKAGNAPDLAQVGYAEVPEVFTKGL LQDVTDEAAKYKDDFASGPFALMQVDGKTYGLPQDTGPLTYFYNAAEFEKLGITVPKTAD ELIETAKKTAAQGKYIMTFTPDEAMMMMSGQAGASGPWYKVDGNSWVVNTQTKGSKAVAD VYQQLIDNKAALTNPRWDASFDNSIQSGQLIGTVAAAWEAPLFIDSAGGTGAGEWKVTQL GDWFGNGTKTGANGGSGVAVLKGSKHPAEAMEFLDWFNTQVDDLVSQGLVVAATTADAKT PQKWSDYFSGQDVMAEFKTANDNMGDFTYMPGFSAVGAAMKQTAAKAADGSAKVSDVFDT AQKTSVDTLKNLGLSVKE >gi|316916369|gb|ADCN01000014.1| GENE 31 34298 - 34453 234 51 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1688 NR:ns ## KEGG: BLJ_1688 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 51 1 51 51 84 96.0 2e-15 MNHITMHGSLTVNGRTVIVHMGDGEANATVDGTHFNVRSLWQLYQLLRLLV >gi|316916369|gb|ADCN01000014.1| GENE 32 34947 - 36233 2206 428 aa, chain - ## HITS:1 COG:Cgl2831 KEGG:ns NR:ns ## COG: Cgl2831 COG0172 # Protein_GI_number: 19554081 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 425 11 429 432 477 57.0 1e-134 MLDIQFIREHTDIVKESQRKRGESVELVDEVLSSDTARREALKAFEEARAQQKEIGKKVA SAPADEKAKLIAETKELSQKVSEYKSKADSAAEEYTTAMWKLSNIVEPEAPEGGEDDYVV VKKVGQIRDFAAEGFEPKDHLTLGTGVAGIDMRRGVKVGGSRFYFLRGQVARMQIAMLTM AVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHADEIYRLREPDDQYLVGTSEVALAGMH ENEILDLGNGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKQEDSYKEHE HLLAMEQEMLAKVEVPYRIIDTAAGDLGSSAARKFDCEAWVPTQGRYRELTSTSNCTEYQ ARRLNIRERMEDGGTRPVSTLNGTLATTRWLVAIMENHQQKDGSIEIPQAMRAYMGGKEV IEPTKWEA >gi|316916369|gb|ADCN01000014.1| GENE 33 36467 - 37648 1533 393 aa, chain + ## HITS:1 COG:sll0036_2 KEGG:ns NR:ns ## COG: sll0036_2 COG1597 # Protein_GI_number: 16331996 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Synechocystis # 102 345 65 289 309 92 31.0 9e-19 MPQPALTVFLIIAAIAIVVVLIAVIVIALRAQRRRKLAQTLEKRRDDEVQYAFIVNPSKP QAEARRLHIQRFCEAKGLNRIRFYDTQLDKDGRVCALEALEDGADVVIAVGGDGTVRTVA SAVSGTGHALGIIPIGTGNLFARNMGVPVDDIDAALTVATSHGSRLVDMGRLTLLDHPED DHGHAFLIIAGIGFDAAMIDDTNPELKANISWLAYFVGGVKNLFAPKFRGTLTVTNADGS THTIKNLDFRTVMAGNCGQIPMFSLMPAASYDDGLLDFEIIDTTGGILGWANLFGDVVHQ TIIGKPEQNPLSTNSTIEQVQGVSAEITLEKPAKAQVDGDMLPETRHIRFSVDHRALIVR VPDASALEKTAQAAASNATSDFAEMTGTLEPIR >gi|316916369|gb|ADCN01000014.1| GENE 34 37653 - 38492 905 279 aa, chain - ## HITS:1 COG:lin2530 KEGG:ns NR:ns ## COG: lin2530 COG3711 # Protein_GI_number: 16801592 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 1 275 1 275 285 164 33.0 1e-40 MEILRVFNNNVVLAKGGDGGEVILTGRGLGFQAKPGQTVDESKVVRTFVPSDGRDPDHLA QMLADIPPEIIRVVVESMQEAGLGERETGSTTLVMALSDHVANAVERVRRGIDITYPLLG EVSNLYPQEYAQGRAMLASLNARLDVTLPDGEATALAMHLVNAGFATGDLSYTYTMTGVI QQLLDIIDHSYGITLDRSSVNVGRFITHLRYLFVRIHQHQQLTDEPAPVMKVIRESYPAA LRCARTIASLLELRLDTDISDDETAYLAMHVARVTGHAS >gi|316916369|gb|ADCN01000014.1| GENE 35 38510 - 40891 1882 793 aa, chain - ## HITS:1 COG:Cgl1324_2 KEGG:ns NR:ns ## COG: Cgl1324_2 COG1263 # Protein_GI_number: 19552574 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Corynebacterium glutamicum # 195 596 1 367 415 311 42.0 3e-84 MEHSGIRQQGGTVANASNATPAVIAACIVDAVGGSANITNLTHCATRLHFELDDAGQVSQ HGLESIPGVLGAFPRTGNRYQVIIGGAVASVYEQIVRMQAARLTPATQLPSAASRPTQSA QSTQSTQSTQSTQSTQPTQPTQSAPNLSDDVAPLRDTATDTEQSHGPANTSRHFMPRTIR EWGSAARARAAAFFDYLSDSFRPILGVLLGASLVIAIVNVIVALGIVPDGETSTGWILLK AIWEGVFTVLPIMIAYNAAKKLDVDPWLGGAIMAALMTPQLTGVMSGMSGTSVSSALSGE IQCSATATFGTETCTVSAFGIPIQLNDYSGNIFVPLLMAAVLAVVYRGLKRVIPDSVQLV FVPFLSLVVVFALTILVIGPLGIWLGSGLGAATAWLNAHVPFLFALIIPMLYPFLVPLGL HWPLNALILMNIQTLGYDFVQGPMGVWNFACFGATAGVLVLAVRGKDSAMRQTAVGALLA GLLGGVSELSLYGIHLHHRRVYRWLLAGCAAGGVTSAVFGWLFPSVLPSGQMVRGVTTTA FAFSSLLTIPVFDRMWVYALSIAVAFVMAMVLTVLFGYRTPSRATKTQMVSADENARPQD MARGIDTTVSDVESAEDSPSRAAPDRALDSNAILSPVAGRLVNLEATGDPVFASRALGEG VGVVPETTGETAVLAPVSGMLKTVARTGHAFGIKTDGGIEVLVHIGIDTVDMDGEGFAVV VAKGERIAAGEPLATVDFGKVAAAGHSVVVVVTVVNAAELTVVTPLIGDGSGDNNGGDCK TVSAGSPIIDVEQ >gi|316916369|gb|ADCN01000014.1| GENE 36 41342 - 42895 2009 517 aa, chain + ## HITS:1 COG:BS_ywtG KEGG:ns NR:ns ## COG: BS_ywtG COG0477 # Protein_GI_number: 16080636 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 73 517 8 442 457 321 43.0 3e-87 MTTTTASPVSKQTASAAQETSATGAAATAIETIETGVAGVADAATNAAANAIEDLEAAES RGFSTRFPLNSAFIFTFGALGGMLFGFDTGIISGASPLIESDFGLSVSQTGFITSSVLIG SCAGALSIGALSDRFGRKKLLIVSALLFLLGSGLCASSTGFAMMVCARIILGLAVGAASA LTPAYLAELAPKERRGSLSTLFQLMVTFGILLAYASNLGFLNHNLFGIRDWRWMLGSALV PAALLLLGGLLLPESPRYLVNKGDTCNAFKVLTLIRKDVDQTQVQIELDEIKAVAAQDTK GGVRELFRIARPALVAAIGIMLFQQLVGINSVIYFLPQVFIKGFGFPEGDAIWVSVGIGV VNFVSTIVATLIMDRFPRKGVLIFGSIVMTVSLAVLAVMNFVGDVAVLAVPTMILIAFYI LGFAVSWGPIAWVLIGEIFPLSVRGIGSSFGSAANWLGNFIVSQFFLVLLDAFGNNVGGP FAIFGVFSALSIPFVMRLVPETNGKSLEEIEEEMTKR >gi|316916369|gb|ADCN01000014.1| GENE 37 42983 - 44659 2637 558 aa, chain + ## HITS:1 COG:sll0726 KEGG:ns NR:ns ## COG: sll0726 COG0033 # Protein_GI_number: 16332219 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Synechocystis # 6 556 25 566 567 610 57.0 1e-174 MVANNAGQPATPADLINVDEVIGKYYDLVPDPEVPEQRVIFGTSGHRGSSLKTSFNEAHI IAISQAIAEYRKKAGVTGPLYLGSDTHALSGPAKKTAIEVLVANGVHVRVDSRDDFVPTP VVSQAILTHNRAADGTQRFEGEGLADGIVVTPSHNPPTDGGFKYDPVTGGPAPAETTNAI AARANELLGDFKSIKRVPYEEAIKSEYVEGFDFREHYVDDLENVIDFDVIRNSGVRLGID PLGGASVNYWPLINEKYGLNIGVVRPEVDPTWRFMTIDHDGKIRMDPSSPYAMKGLVDEL NAGAWDKYDLVGGTDPDADRHGIVCPNWGVMNPNHYIAVCVEYLFGGNRPGWPEGAAVGK TLVSSSLIDRVAASINAKVIEVPVGFKWFVDPLFSGEVAFGGEESSGMSFLRKDGRVWTT DKDGLIPDLLAAEITAKTGKNPAQLHQEQVERFGESWYKRVDTPTTLEQKAKFAALSGDD VTASTLAGEDITAKLTEAPGNHAKIGGLKVTTKDNWFAARPSGTENIYKVYAESFVSPEA LDKVLDEATVVVDKALSE >gi|316916369|gb|ADCN01000014.1| GENE 38 44914 - 45267 111 117 aa, chain + ## HITS:1 COG:no KEGG:BL1629 NR:ns ## KEGG: BL1629 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 117 8 124 124 196 99.0 2e-49 MTTEAFGRLASWSSFNIVVGRHDEFAHSRVAIPQKRGTTAKSIVLHFPHPTHSNWKPRKD AIPATPVTAITRGAVGRHAKIGKTRVASHTHWRKSTLNAPTTPPIDHYDTFPSTIEH >gi|316916369|gb|ADCN01000014.1| GENE 39 45389 - 46477 460 362 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1704 NR:ns ## KEGG: BLJ_1704 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 362 4 365 365 679 98.0 0 MTDGITNYGALPGSIYDQPPEESEAVFVPPEFAGSFSTDSKYPTSRDSSSPNSGAHDSAA TPTMSESLAQRKRDMVARCTEEAKRAGKKLLFGMTTSLALQSVPIPADCDLDSAKLHTVS SVKSKRFRTRHAPLQTHIWKHAAKAANVEMNQHVFALDLFHVWAQLAPYVSFESLIVLGD AVITATSKQPVLAKDRDAAAIYQDLVKFVEQFTRFRGRPSCVRALPLISPGADSPKESEE RLSLVAHGIPQPVANYVVPDAAFASGAPITLDLAWPEFKVAVEYDGDHHRTSKAQWRRDQ EKRGMLVGRRWLVFIATAASIANEDTRAEFAFNVARALASRGAVFEFHVVAMSLEELAQS LL >gi|316916369|gb|ADCN01000014.1| GENE 40 46717 - 47139 368 140 aa, chain + ## HITS:1 COG:no KEGG:BL1627 NR:ns ## KEGG: BL1627 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 140 1 140 140 270 100.0 2e-71 MNGDHSLAVHALVYLDHRATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGG YALARPAAEITLRAVAEATGTTFVKVNWTPGDVHEDCLVSSSMGAVMNDIYAGLNRTCLE QLEHTTIHDITEQIFSERKG >gi|316916369|gb|ADCN01000014.1| GENE 41 47158 - 47304 64 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLMALGVLMDMVTSLRIRVIRVRCADVLCAVRRLFSSLTAEALSTDAG >gi|316916369|gb|ADCN01000014.1| GENE 42 47273 - 48889 1443 538 aa, chain + ## HITS:1 COG:ECs0342 KEGG:ns NR:ns ## COG: ECs0342 COG1249 # Protein_GI_number: 15829596 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes # Organism: Escherichia coli O157:H7 # 340 538 250 447 450 216 55.0 7e-56 MSISTPNAISTPNTSPTITTDALIIGFGKGGKTLAAKLSAAGRKVVVAEASADMYGGTCI NIGCLPSKSLILSAEQARRDGANSTPETREAAFEAAIKEKRRVTSMLRDKNYHKLADQDN ITVITGRAHFTGPHSVEIATAEGPVAVTASKIFINTGATPRIPDIPGIHTTPGVYTSTGL MDLDDMPQRLVIIGSGFIGLEFASMFADFGTAVTVLQHNAEFLPREDADVAAAIRAQLEA QGVKFLFNADTKAIAPAADGGVRLSVAVKGMTRGASQACDSTPAGTGNAHTDITGATDTT TTTSPTSNPTDHATMSHVQTKPSDDGEPRFAEPAEARFCLTTDAVLVATGRTPNVEGLHL EAAGVELTERGAVKVDELLRTTAADIWALGDVNGGPQHTYISLDDYRVVWSQLNGSDRPY TVKDRKHVPSSTFLATPYSRVGLNEREAKAAGLDYVVKRLPVAAVPKAQVMRRPDGLMKA IVERNTGRILGAMLLSVESHEVINIVKLAMDLDAPASTLRDMVFTHPTIAEALNDLFA >gi|316916369|gb|ADCN01000014.1| GENE 43 49048 - 49200 189 50 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1707 NR:ns ## KEGG: BLJ_1707 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 50 1 50 50 75 100.0 5e-13 MLIAGNSKTVALGPGGMALAPGLPLGLGWFIRRRLGLDASDILDRKLGLK >gi|316916369|gb|ADCN01000014.1| GENE 44 49407 - 49523 89 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFSTLTQAVQSLAEVGLPSARQNNVVEGVDNITPIDFA >gi|316916369|gb|ADCN01000014.1| GENE 45 49522 - 50412 498 296 aa, chain + ## HITS:1 COG:VC2234 KEGG:ns NR:ns ## COG: VC2234 COG0328 # Protein_GI_number: 15642232 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Vibrio cholerae # 3 152 5 141 156 96 40.0 4e-20 MTITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCA VLEALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREI SQRPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRSGARDGYLPIEGWQSLLGSEYAHG TDVPPDVQLVLDGKADAASLRKPAAATDQTDAARPETKSSSPLAAQSTQPVQSTQPVPPA KPSGLTVSGTLTFSPAPKTSPYFNGQPMPIKGSIEIEGYVDGDGNLTITNAPFVRH >gi|316916369|gb|ADCN01000014.1| GENE 46 50543 - 51241 1236 232 aa, chain + ## HITS:1 COG:L0045 KEGG:ns NR:ns ## COG: L0045 COG0120 # Protein_GI_number: 15674215 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Lactococcus lactis # 7 227 2 222 224 244 57.0 7e-65 MDKAQQDALKKAAGIEAAKLVENGMIAGLGTGSTVKFLVDELGRRHQEEGLEFTGVTTSR RTQAQAESYGIKIVDIDDVDHIDVTIDGADEVDKNFNGIKGGGAALLWEKIVATNSNQIV WIVDESKVVDTIGKFPLPVEVIPFGAGQVIKKFEARGYKPVLRLDADGKEVRTDENNFVV DLHLERIDHPQELAEDLINTVGVVEHGLFLNMVDKVIVGDPNGPRVMTNANK >gi|316916369|gb|ADCN01000014.1| GENE 47 51394 - 51483 185 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSVIKKRRKRMSKKKHRKLLRKTRHQRK >gi|316916369|gb|ADCN01000014.1| GENE 48 51675 - 52307 742 210 aa, chain - ## HITS:1 COG:no KEGG:BL1621 NR:ns ## KEGG: BL1621 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 19 210 1 192 192 279 97.0 4e-74 MTNSENSSTTQSHGKLIAVVVAAAVVIILAVLSAFVWPGWAIQKNDGTSTTTQNSQQKTE SSEPIKPTIDATALPDDASELLKAMPDSVLNYARTKADASTTWNSASPLEEYTLTYSTGD AAKDVTLVAAQWSSADNAKTQYDALVAAQTGDESASGNVKVSGNVTGAYVVKADASNSKN AAAIWQNDTVVFQATGTKEAVDRFYQKFPM >gi|316916369|gb|ADCN01000014.1| GENE 49 52435 - 53973 1290 512 aa, chain + ## HITS:1 COG:MT3691 KEGG:ns NR:ns ## COG: MT3691 COG1066 # Protein_GI_number: 15843198 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Mycobacterium tuberculosis CDC1551 # 1 480 1 424 480 346 46.0 8e-95 MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSRTAAPGRTSRTQSVT VADNARSAARPITEVGTESVERLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQ TAGNIARVVAGDSTFRGAGQRSAQQSGRAQGGTSNTVSVQGNAPSVHANTVLYISGEESQ AQVRLRASRINAVEPNLLLASTTDLSTVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGS TQVREVASALIDTAKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRML RAVKNRFGPTDEVGCFDMSGEGIEEVTDPAGLFLSGDGPDAANAAPMEGICVTFTLDGHR SLPIEVQALVTTSVLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQA KEPGSDLAIVAALASAATSKPIARATCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAV IPPLRKPVRVEGLRLVESNTLSDALDALGVRK >gi|316916369|gb|ADCN01000014.1| GENE 50 53988 - 55112 290 374 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 21 370 14 309 317 116 28 4e-25 MDITHLTPDAEGSIEWPSFSNDKKAVVTLGAFDGMHLGHQAVIKRVVELAHQHDAFSVVI LFDPRPAFVHGWAASHHGEEPAVQNVDAEALTSVDDRLHRMEQFGVDHVLVVHYTLAFAA MSYIFFLGRLTGKLGMRTLVLGQDAAMGKGREGDVKHIANLAAATGVFELDVVDDRGPGE VRIPRDFKPEAPSEWGEPVDPLANATKAERRAWSKKNQAKAMRAWSSTNVRYLLAHGRIQ DANAILGAPHAIEGEVVHGEERGRTIGFPTANLGSDIAGYIPVDGVYAGWLVDGENRWPA AISIGTKPTFSEKTGLNERVVEAYCITDEWIDLYGHKVRVEFIGFLRPQVKFDGPDQLVD ELKRNVEETKRLTA >gi|316916369|gb|ADCN01000014.1| GENE 51 55210 - 56373 713 387 aa, chain - ## HITS:1 COG:Cgl1933 KEGG:ns NR:ns ## COG: Cgl1933 COG0130 # Protein_GI_number: 19553183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Corynebacterium glutamicum # 8 373 9 283 297 187 39.0 2e-47 MLHTTPSGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRL LNAIVAHDKTYEATIRLGLRTTTDDAEGEALVDDEARSRWQTLSAQLTEGGQSGEPTASP TASWQNLLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRLVTISEFT VLDIRSGFVAGEQAAEPLREDANTGTIPVLDIDVRVSCSSGTYIRALARDLGNELGVGGY LTRLRRTRVGRFALPDDTSGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLN TPEGLAGDERRNWLLDHALTMEQAVRGAMPALDITPEEASELRFGRRIERTISEPTAAIV PQTHDVAAIIERANAHQAKPVTVFPLA >gi|316916369|gb|ADCN01000014.1| GENE 52 56375 - 56851 859 158 aa, chain - ## HITS:1 COG:Cgl1938 KEGG:ns NR:ns ## COG: Cgl1938 COG0858 # Protein_GI_number: 19553188 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Corynebacterium glutamicum # 5 149 4 148 149 112 47.0 2e-25 MAGTNPRAARIAALIQRVVASSIERELHDKRLASITVTEVRVTNDLQIAKVYWTQLGHEG HEEGERKRAQQALDQAKGHLRSLVGHKAGLRLTPQLQFVFDEVPGEAHEIEDILAVAKKR DEELARARATAQYAGDADPYKHDDEAEAEGDEFGSDEE >gi|316916369|gb|ADCN01000014.1| GENE 53 57002 - 59929 3207 975 aa, chain - ## HITS:1 COG:ML1556 KEGG:ns NR:ns ## COG: ML1556 COG0532 # Protein_GI_number: 15827818 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Mycobacterium leprae # 334 974 287 923 924 712 61.0 0 MAKPRVYELAKVLNVDSKTVLEKLKDMGEFVKSASSTIEPPVARRLKAEFAKDNAKGDSK PVQQRRPAAPSAPASTSSSAPTPAAPARQASPASAHQQAPTPGAPTPRPQGGARPGMPTP GRHGQNDNRENGRDNREGRENGRQSRPNDRRNNDRRNNQGRPNNGQPVQHQNNRGNASAP RPHAQGGAGANGGNAASNAIPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTA DNGRGGRPGRPGQGQGQGRGFRGGRPGQGGQGGPRPGQWGHNRPGQGGGSQGAGQGGARG GFRGGQGGGNNFQGGGAPSNGPARGGGRGGRGGAAGAFGRQGGKSSKARKNRLAKRHEYE ELKAPTIGGVRIPNGNGQTIRLRQGASLADLAEKINVNQAALVTVLFHLGQMATATQSLD EETFQILGEEIGWNIQLVSAEEEDKELLQQFDINLDEEELQDDEDLKPRPPVVTVMGHVD HGKTRLLDTIRKTNVIAREAGGITQRIGAYQVTVNLEGEPRKITFLDTPGHEAFTAMRAR GAELTDVAILVVAADDGVMPQTVEAINHAQAAKVPIVVAVNKIDVPGANPEKVRGQLTEF GLVPEEYGGDTMFVDISAKQNLHVDKLLEAVLLTADAELDLRANPDMDARGATVEARLDK GRGAVATVLVQQGTLHVGDAIVAGTSYGRVRAMLDENGQPMEAAGPSTPVQVLGLTSVPT AGDLFLVASDDRAARQIAEKRQATERAAQLAKRRKVVSLEDFKKKFAESEIDMLNIVIKG DSSGSVEALEDSLMKIEVSDEVGIQVIHRGVGAITQNDVNLATVDKAVIIGFNVRPNRQV ADLAEREGVEIKYYSVIYRAIEDIEASLKGMLKPEYEEVVTSHSEIREIFRSSKFGNIAG VMVQDGEVKRGTKCRILRNGVATVNDLEISSLRRFKDDVQSVKEGYEAGINLGTFNDIEL GDIIETFEMREVERK >gi|316916369|gb|ADCN01000014.1| GENE 54 60199 - 61266 536 355 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 11 345 17 360 537 211 36 1e-53 MELDLTGIHKLAAEQGIDPGTLDDALAEALRLAYLKTPHAARHARVELDERSGNFTVWAA DEIPVEPTEDNPYPVPKLGEEYDDTPRDFGRLAAATARQVITQLFRRAEDEKVFGAFSGQ KGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARGIKG PEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKGALI GPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAFIHD DQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKVAAEKAAQAAAEAAAPEAE >gi|316916369|gb|ADCN01000014.1| GENE 55 61342 - 62202 763 286 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1717 NR:ns ## KEGG: BLJ_1717 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 286 1 286 286 424 97.0 1e-117 MQTRFSSGRFTRRLASALCASAMLCSLSACSMPRLAGRAEAEAQMSPCEKAMTLADYATH PAEGTPLLEQYATGLAAPLTWIDVAGYCSGRFAEGTLRDAQTKQWMAFLADKFGQSAPEV TPARLDGVTSANVDRPVLDAMAVAEDRAGFAIEVLAARGQTAGATLALSDMHKTAGQQLV ALANGNFDDSGAQSSSSGQNDPRQKVYAIDQLLANPTTIADKASGQTVPTAAAIEMDCAR AQIKAVTESKSSTESDMLLILAALAAKHAYTAFQLGYPATDAELFE >gi|316916369|gb|ADCN01000014.1| GENE 56 62243 - 63286 679 347 aa, chain - ## HITS:1 COG:PM0151 KEGG:ns NR:ns ## COG: PM0151 COG1609 # Protein_GI_number: 15602016 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pasteurella multocida # 6 344 3 329 337 126 28.0 5e-29 MGNRVTIKDVAREANVSIKTVSNVLNDTGSMRPDTRRRVEEVMRKLGYTVNISARAMQSG GTKLIGLNIFDFSQPFVPFFTDKVIEYAKERHYGVVINTYGSDGEGLVASVDESYRLGAE GWILFVMSPLADEGAVLEQPYPIVTTGDHLAYGKSDWITMPNIESISTVVGRFLDEGAQT VALMGVLPELVDEAVLRRQTEGTQALRAQGYVKAFEERGLSVNWRYVIPAESMNQREGMR VTKAMLDKLPCPDVVVCLNDAIALGAIHELQRCGLHVPDDVQVVGFDNVPEAEYSVPALT TIDPHIDDYAKHAVDMLIDRIEGYSGPARTYTTDFTLVERASTRLAH >gi|316916369|gb|ADCN01000014.1| GENE 57 63503 - 63985 209 160 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 141 176 312 317 85 40 9e-16 GHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTH DNGTEFAHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVR EIVDEINNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 12:46:46 2011 Seq name: gi|316916325|gb|ADCN01000015.1| Bifidobacterium sp. 12_1_47BFAA cont1.15, whole genome shotgun sequence Length of sequence - 46522 bp Number of predicted genes - 44, with homology - 44 Number of transcription units - 18, operones - 11 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 17/0.000 - CDS 58 - 1482 2219 ## COG1282 NAD/NADP transhydrogenase beta subunit 2 1 Op 2 10/0.000 - CDS 1482 - 1787 505 ## COG3288 NAD/NADP transhydrogenase alpha subunit 3 1 Op 3 . - CDS 1803 - 2966 1679 ## COG3288 NAD/NADP transhydrogenase alpha subunit + Prom 3224 - 3283 1.6 4 2 Tu 1 . + CDS 3307 - 5418 2997 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) + Term 5433 - 5464 4.1 - Term 5409 - 5468 10.4 5 3 Op 1 1/0.000 - CDS 5471 - 6535 1565 ## COG1159 GTPase 6 3 Op 2 13/0.000 - CDS 6537 - 7970 1853 ## COG1253 Hemolysins and related proteins containing CBS domains 7 3 Op 3 17/0.000 - CDS 8046 - 8594 887 ## COG0319 Predicted metal-dependent hydrolase 8 3 Op 4 . - CDS 8584 - 9759 1525 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 9 3 Op 5 . - CDS 9778 - 10116 569 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 10 3 Op 6 . - CDS 10165 - 10962 737 ## COG1385 Uncharacterized protein conserved in bacteria - Prom 11087 - 11146 80.3 + TRNA 11058 - 11145 57.7 # Leu GAG 0 0 + Prom 11070 - 11129 80.4 11 4 Op 1 . + CDS 11158 - 12084 1041 ## COG0566 rRNA methylases + Prom 12148 - 12207 2.3 12 4 Op 2 . + CDS 12285 - 13529 1763 ## COG0448 ADP-glucose pyrophosphorylase + Term 13553 - 13583 5.0 - Term 13541 - 13571 5.0 13 5 Op 1 4/0.000 - CDS 13619 - 14212 688 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 14 5 Op 2 19/0.000 - CDS 14219 - 14773 571 ## COG0822 NifU homolog involved in Fe-S cluster formation 15 5 Op 3 4/0.000 - CDS 14785 - 16059 1575 ## COG0520 Selenocysteine lyase 16 5 Op 4 41/0.000 - CDS 16198 - 16977 1355 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 17 5 Op 5 12/0.000 - CDS 17003 - 18238 1737 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 18 5 Op 6 . - CDS 18244 - 19743 1985 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component - Prom 19771 - 19830 3.5 19 6 Tu 1 . - CDS 19967 - 21562 1011 ## BL0873 hypothetical protein - Prom 21595 - 21654 3.0 - Term 21672 - 21734 23.4 20 7 Op 1 . - CDS 21809 - 23470 2514 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 23547 - 23606 1.8 21 7 Op 2 . - CDS 23616 - 24191 414 ## BLD_0609 dipeptidase 22 7 Op 3 . - CDS 24134 - 24508 100 ## BL0875 hypothetical protein 23 7 Op 4 5/0.000 - CDS 24501 - 24947 640 ## COG0757 3-dehydroquinate dehydratase II 24 7 Op 5 7/0.000 - CDS 25111 - 26733 1691 ## COG0337 3-dehydroquinate synthetase 25 7 Op 6 . - CDS 26816 - 28003 1589 ## COG0082 Chorismate synthase 26 8 Tu 1 . + CDS 28067 - 28540 445 ## BLJ_0873 peptidase A24A, prepilin type IV 27 9 Op 1 4/0.000 - CDS 28708 - 29889 1455 ## COG1559 Predicted periplasmic solute-binding protein 28 9 Op 2 9/0.000 - CDS 29900 - 30337 197 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 29 9 Op 3 . - CDS 30367 - 33048 4164 ## COG0013 Alanyl-tRNA synthetase 30 10 Op 1 . - CDS 33176 - 33412 362 ## Blon_1603 hypothetical protein 31 10 Op 2 . - CDS 33412 - 33810 599 ## BLJ_0868 hypothetical protein 32 11 Tu 1 . - CDS 34013 - 34687 759 ## COG0406 Fructose-2,6-bisphosphatase - Prom 34782 - 34841 4.1 33 12 Op 1 1/0.000 + CDS 34840 - 35772 790 ## COG1835 Predicted acyltransferases 34 12 Op 2 . + CDS 35836 - 36831 871 ## COG1835 Predicted acyltransferases - Term 36839 - 36879 9.2 35 13 Tu 1 . - CDS 36922 - 37548 1047 ## PROTEIN SUPPORTED gi|23334986|ref|ZP_00120224.1| COG0522: Ribosomal protein S4 and related proteins - Term 37595 - 37631 2.2 36 14 Op 1 36/0.000 - CDS 37747 - 38715 928 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 37 14 Op 2 . - CDS 38717 - 39934 1458 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 38 14 Op 3 . - CDS 40025 - 40423 633 ## BLD_0626 hypothetical protein - Prom 40468 - 40527 4.0 - Term 40526 - 40562 5.1 39 15 Tu 1 . - CDS 40568 - 43222 3683 ## COG0210 Superfamily I DNA and RNA helicases 40 16 Op 1 7/0.000 + CDS 43339 - 43920 849 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 41 16 Op 2 . + CDS 43971 - 45335 386 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 45371 - 45422 15.1 42 17 Op 1 . - CDS 45465 - 45674 233 ## PROTEIN SUPPORTED gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 43 17 Op 2 . - CDS 45681 - 45941 284 ## BLD_0631 hypothetical protein - Prom 45991 - 46050 3.5 + Prom 46097 - 46156 2.0 44 18 Tu 1 . + CDS 46191 - 46521 265 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316916325|gb|ADCN01000015.1| GENE 1 58 - 1482 2219 474 aa, chain - ## HITS:1 COG:mlr5184 KEGG:ns NR:ns ## COG: mlr5184 COG1282 # Protein_GI_number: 13474323 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase beta subunit # Organism: Mesorhizobium loti # 13 469 6 463 465 346 47.0 7e-95 MTSATVGAIDIVAWFVYLFSAVLFVVGLHFMNSPKTARKGNQISAFGMVVAVLMAFIVLF AKGFVNIVAVVVLVVGILIGAVAGVVSAKKVKMTDMPQLVSVFNTVGGGAAALVALNDIL TKEGTPDIVVLITAGLGILIGSVTFTGSLIAAGKLQGIKWVKKLNLPGKGVWNILFAVLS VASLVMLCVQPEQRLLWSILTTVFALCYGLVFVIPIGGADMPVVISVLNACTGTAVAMSG LAIDNVALIVAGALVGSAGVTLSILMAQAMNRPLLSVLAGGFGGGTDAAAAGDGPEGTMK ETTPDDLAVQLVYAQKVIFVPGFGLAQAQAQRELADLGELLKGHGVEVSYAIHPVAGRMP GHMNVLLAEANVPYEELVDLDEINPQFPQANVALVVGANDVTNPAARRPGTPVSGMPILD VDKSQNVVVMKRGRGMGYAGIQNELYFEDNTQMLFGDAKKSLQSVIAAVKELLA >gi|316916325|gb|ADCN01000015.1| GENE 2 1482 - 1787 505 101 aa, chain - ## HITS:1 COG:Rv0156 KEGG:ns NR:ns ## COG: Rv0156 COG3288 # Protein_GI_number: 15607298 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Mycobacterium tuberculosis H37Rv # 4 93 5 96 110 85 52.0 3e-17 MPTLVVSITLFVLALLIGIEVIGKVPATLHTPLMSGANSIHGIVIVGVVIVAAEANSPLA YVFIFLAAVLGTMNVVGGYVVTDRMLEMFKSSKNEKKGESK >gi|316916325|gb|ADCN01000015.1| GENE 3 1803 - 2966 1679 387 aa, chain - ## HITS:1 COG:RC1334 KEGG:ns NR:ns ## COG: RC1334 COG3288 # Protein_GI_number: 15893257 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Rickettsia conorii # 14 368 6 356 374 233 40.0 4e-61 MAQNPEATVVFGVLNETSETESRVALTPDIVTRLKRSGVSSLIEAGAGIAADYTDEDYEK AGAKVTSRDEVLAEADALGFVDRPSAETVAKLKAGQWVIGMLGSFTDADYVAALEKAGLV GIAIEKLPRKLSSAQSMDEMTSQNSVMGYKAAITAADAYGSFLPMMTTAAGTIRPAKALV LGAGIAGLQAIGTLKRLGAVVTAYDVRPASQGEVESLGAKFLDLGLDFSKGQGEGGYARA LSAEEQAQQQAAVDEKAAGFDIIITTAKVPGRKPPVLLTAAGVKGLKRGAVIVDCAASDL GGNVEGSAVGEQVTEGGVKLIGAPYLASGVATTASNLLSRNVADILVHFVRDGKLGQDLT EELDDALVVAGRAAAPAAAADAEKSEK >gi|316916325|gb|ADCN01000015.1| GENE 4 3307 - 5418 2997 703 aa, chain + ## HITS:1 COG:MT2242 KEGG:ns NR:ns ## COG: MT2242 COG1022 # Protein_GI_number: 15841677 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium tuberculosis CDC1551 # 127 692 27 594 603 407 41.0 1e-113 MGDYNLNFEKRSPHGWTTLKGLQEQDLSVINSFTQHTINLTRKALRLGSDFVHPVHDDTP DEPDYLSNADVPVEANIALPHSDDWDDGHLTVTDIDPVTGLLTTSTEGNPPLDEGTSIYD LYADRAERMGDEPLYTYKSGNDWVTVTANEFLADVRAVAKGLIHYGLKKGDAVAFMCRTS YDWDLTDAAIMACGGVLATVYDTDSAEQIRNIVNNSDARLLIVQDTDMREKADGSVEECP SLEHIITIETGGLDEIKAYGAGISDEELDERIDSVKKTDLCSIVYTSGSTAAPKGVEMTH EHYCQTALNLPTYMPELLHDKKNTILLFLPQAHSFARAINYIVVASNVHIYIAAGIKTLI SDLQVARPSIMIVVPRVLEKVYNAASQKAGHGPKGVVFASAVVAAQNYMKEVSTNGKAGA LTRTRRAAFDPIVYSSLREVLGGRAKWIVAGGAPLDPELLAFFRGAGVPVYEGYGLTETT APCAFNPLGTPFHAGSVGIAFPGFSLRIAEDGEIQVKGRAVFPRYHKNDEATELSFTEDG WYVTGDLGRIDNDGFLYITGRKKDLIITAGGKNVSPGPIEEVIQRCEFVSQALVLGDKRP FISALVTLDEESLRPWLAAKGLDENMPLEDAAKNAAVRAEVQKWVDQANEGVSRAESVRK FIILPEEFTQENGLMTASMKVIRPKVIKRYSTLLNTQMYTKRK >gi|316916325|gb|ADCN01000015.1| GENE 5 5471 - 6535 1565 354 aa, chain - ## HITS:1 COG:MT2433 KEGG:ns NR:ns ## COG: MT2433 COG1159 # Protein_GI_number: 15841876 # Func_class: R General function prediction only # Function: GTPase # Organism: Mycobacterium tuberculosis CDC1551 # 44 354 4 300 300 266 48.0 4e-71 MTEQNNSTNDVDDIDVTDASDVAGVAEVDATGETENVTKQDVPYRSGFVAVVGRPNVGKS TLINALIGKQIAIASSRPETTRKAIRGILTADHAQLVLVDTPGIHRPRTLLGQRLNDVVD ESLADVDVVAFLLPADQEIGPGDKRILSRLRTDFATKREDGTFKWRIPLIAIVTKIDELG RQQLINKLIEINDFADFSDIVPVSALKHDNLAEVKNVLIEHTPEGPQMYPDDQISEERPE DTIAELVRGAFLETLDDELPHSLAVVVDSIDYPEDNETGQGYDGKAQVNVSIYVERDSQK PIIIGKGASNLTYVKKKLRTPVNRIVGQKAKLDLHVKVAKGWQSDPKQLERLGF >gi|316916325|gb|ADCN01000015.1| GENE 6 6537 - 7970 1853 477 aa, chain - ## HITS:1 COG:Rv2366c KEGG:ns NR:ns ## COG: Rv2366c COG1253 # Protein_GI_number: 15609503 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Mycobacterium tuberculosis H37Rv # 12 460 10 433 435 229 33.0 8e-60 MEYSSTTPIAITVILVLVAALFVWLSLTMAAAEGAVARVTRASLNNLILEVQTDSEASQF LKMKKIDKIHRVQRLIADRYATAGSCAFFRIACNVLDGVLVSSIASLWGAELWIELLSGF LFAIIVAVVSVLVRPRTAGMAKQVGIMISNSRIVSLATKLTPFARIGGDKSGSKGPGRRS KDSDLSDDEELEKIQLEQGKAAIDRLVESNDFDPEVSEMLRNVLTLSDTLTREIMVPRTD MICMERDSTLSSALKLFSRSGFSRVPVIGEDVDDLIGVAYLKDAVRATAFNPAAMERAVE SIVRQPLLVPESKPVDDLFHEMQRSRQHVAVVVDEYGGIAGMVTIEDAIEQIVGELEDEH DRTQRTEPEKIGDNKWKMPARTPIADLEEIFEIDIDEDDVDTVYGLLTKILGRVPIVGAS AVTRGLRLTVVDSAGRRKKVSTIVVEPAHVEGGEENNKTHEETDGEPVEGDDTASKE >gi|316916325|gb|ADCN01000015.1| GENE 7 8046 - 8594 887 182 aa, chain - ## HITS:1 COG:Cgl2235 KEGG:ns NR:ns ## COG: Cgl2235 COG0319 # Protein_GI_number: 19553485 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Corynebacterium glutamicum # 1 146 1 151 196 144 49.0 9e-35 MSVDVTNETQWVIDPKVFSDLGIWVLDQMRVSTQSDLTIMFVDPDPIAELHMRWMNLEGP TDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAAQQAAAAGHSTMQEMLLLTIHGILHL LGYDHVTPEQERQMFGLQRQLLLTFFALRHDANVQATLPAGTPDALALYDAAHGAGRDLD SK >gi|316916325|gb|ADCN01000015.1| GENE 8 8584 - 9759 1525 391 aa, chain - ## HITS:1 COG:BS_phoH KEGG:ns NR:ns ## COG: BS_phoH COG1702 # Protein_GI_number: 16079588 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Bacillus subtilis # 143 353 108 319 319 270 64.0 3e-72 MATTTRTITIPPQLDPVAVLGPVDEVIREVERAFPDLTIIVRGNRVAIVSRSKQTEAQAA QAEDLVNTIIQAAYTAPMDADTVRRMLDQNVLKNHVRLEHPGHGPVRDKLAQSTSNERAH ARSAGSHDPTYRKPTVPGVITFAAGVPVRAKTAGQVAYVNAIESHTITFGIGPAGTGKTY LAVAKAVRAFQDKQIRRIILTRPAVEAGESLGFLPGTLNDKVDPYLRPLYDALGDMLGAD QLKRYMDDGSIEVAPLAYMRGRTLNDAFVILDEAQNTTEQQMKMFLTRLGFNTTMVITGD ISQVDLTVPRSGLATIERILGGINDIAFVHLKTEDVVRHQLVGQIVAAYDRHSAIAGDHR DIERKGRRNHTDFDARQQADSTNQSETDDER >gi|316916325|gb|ADCN01000015.1| GENE 9 9778 - 10116 569 112 aa, chain - ## HITS:1 COG:aq_141 KEGG:ns NR:ns ## COG: aq_141 COG0537 # Protein_GI_number: 15605719 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Aquifex aeolicus # 3 110 2 116 121 114 44.0 6e-26 MSESDDCLFCKIIAGQIPSSKVYEDETTYAFNDINPKAKVHVLVVPKKHYANVAELAAGD PTELAHIVSIAQNIADKEFHGAYRLVFNTGLDAGQTVFHVHAHVMTGEKLDE >gi|316916325|gb|ADCN01000015.1| GENE 10 10165 - 10962 737 265 aa, chain - ## HITS:1 COG:Cgl2237 KEGG:ns NR:ns ## COG: Cgl2237 COG1385 # Protein_GI_number: 19553487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 36 264 26 241 241 108 34.0 1e-23 MTDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRI QAVMADPEAGLAEVVEVGREPEPLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQAD RSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVL HQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLG RNILRAATAGPVALSLLSRVLGRYE >gi|316916325|gb|ADCN01000015.1| GENE 11 11158 - 12084 1041 308 aa, chain + ## HITS:1 COG:Rv0881 KEGG:ns NR:ns ## COG: Rv0881 COG0566 # Protein_GI_number: 15608021 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Mycobacterium tuberculosis H37Rv # 26 305 22 275 288 169 38.0 6e-42 MHCKGFFVICTHERPPMQFITLDTVDDPRVEAYVSLTEMQLRNRLEPAKGVFIAESPKVI DRALAADREPLSLLVEEPWLEGMKDTFDFIDGRWGADIPVYVASPEQLKRLTGYRLHRGA LCAMRRWPLPSVAEVCKSARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLY RRAARVSMGTVFQIPWTRITGFNDDGTENKHYWPFQGIDELKSLGFTTVAMALEDRSISL DELTRRLHAPAEDPTHIDKLALIFGTEGDGLSHHTIARADLTVKIPMSHGVDSLNVAASS AVAFYATR >gi|316916325|gb|ADCN01000015.1| GENE 12 12285 - 13529 1763 414 aa, chain + ## HITS:1 COG:Cgl1094 KEGG:ns NR:ns ## COG: Cgl1094 COG0448 # Protein_GI_number: 19552344 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Corynebacterium glutamicum # 5 394 9 392 409 424 58.0 1e-118 MTKNPKILSIVLAGGEGTRLMPLTRDRAKPAVPFGGVYRLIDFPLSNLVNSGYRQVVVLT QYKSHSLDRHISQVWRFSPLLGSYVSPVPAQQRLGKHWYLGSADAIYQTINIIEDVQPDI VVIVGADHVYRMDFEQMVQQHIESGAEFTVAGIRQPIEESNQFGVIEVDPDHPNMIKNFQ EKPATTTGLPDNPNQILASMGNYVANTKALFEALALDEKAADTKHDMGGDIAPYFASRNE AGVYDFNSNEIPGSTATDHAYWRDVGTIKQFYDAHMDLIAYVPEFNLYNQDWPIYTMSGN LPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDGVV INRRARVYKAILDKNVVLTENSTVGIDTEHDLARGFTVTPDGITVVPKNTIVDD >gi|316916325|gb|ADCN01000015.1| GENE 13 13619 - 14212 688 197 aa, chain - ## HITS:1 COG:MT1513 KEGG:ns NR:ns ## COG: MT1513 COG2151 # Protein_GI_number: 15840926 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Mycobacterium tuberculosis CDC1551 # 95 190 14 114 115 109 56.0 3e-24 MSNDNLVPEPQPSVFDAVNGVLQDEEAARRVMANPALAKGFPNGRPIEHSAASGDDTCAC GGHHGKCGCQDDEQSDGSEIPIKAIDDIGRATAEDVREALHQVIDPELGIDVIDLGLVYG IEIDELGRAIITMTLTTPACPLTDLIEDECASTLAGLVEEFRIDWTWDPRWTMERITSEG RDQLAALGFSFDNMPKY >gi|316916325|gb|ADCN01000015.1| GENE 14 14219 - 14773 571 184 aa, chain - ## HITS:1 COG:MT1512 KEGG:ns NR:ns ## COG: MT1512 COG0822 # Protein_GI_number: 15840925 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Mycobacterium tuberculosis CDC1551 # 11 182 5 149 162 115 38.0 3e-26 MNEFGMSGDDLEQMYQEVILEASKHPHGKESFAPNAAVEQSADAAANVTVQASHEYCTPG ESHQFNPTCGDEATIHVEVSDDEPHTIKRLVWDGHGCSISQASLSVMVDLVDGKTVDEAM DLEQTFHKLMESRGAGLDDENLEEKLGDAVVFQGVSKYPMRIKCALLGWEGLKDSIAKAL AAKN >gi|316916325|gb|ADCN01000015.1| GENE 15 14785 - 16059 1575 424 aa, chain - ## HITS:1 COG:MT1511 KEGG:ns NR:ns ## COG: MT1511 COG0520 # Protein_GI_number: 15840924 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Mycobacterium tuberculosis CDC1551 # 2 422 8 415 417 374 48.0 1e-103 MVDFKAIRAQFPILDQEIHGHPLVYLDSAATSQKPNAVIDAEANFYRTINAGVHRGAHEL AARSTMAFEEARAKVAKLVGANAAEGEEEVVVTGGATAGLNLLATAFGNASLGRGGEAAK RFALKPGDEIVVSRAEHHSVLLPFQELSYRTGATFKWIDLTEDGRVRTDNLDEVITERTK VVAVTHVGNATGAITNIAPIIKRAHEVGSIFILDACQSVPHLKVDFHALDVDFAAWSAHK MYGPTGVGFLYGKRDLLEALPPANFGGSMVELAYMDHEAQYMAPPARFEAGTQPVAQVVA AGVAAEWMMNIGLENIEAHEKTIAAELLKLGDVDGIRILGPRENVDRIGTVAFDVAGVHP HDVGQFIDAQGIAIRVGHHCAQPVHRHFGLYASNRASSGVYNSVEDAQALVEAAKGIRKF FGVE >gi|316916325|gb|ADCN01000015.1| GENE 16 16198 - 16977 1355 259 aa, chain - ## HITS:1 COG:Cgl1525 KEGG:ns NR:ns ## COG: Cgl1525 COG0396 # Protein_GI_number: 19552775 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Corynebacterium glutamicum # 1 248 1 251 252 341 67.0 7e-94 MSTLEIKDLHVHVETKEGIKPILKGATLTVHSGETHAIMGPNGSGKSTLAYTLAGHPKYV VDSGEALLDGKDILKMTPDERAKAGLFLAMQYPVEIPGVSMTNFLRTAKTEIDGEAPGIR QWAKDLSAAMKRLKMDPKFASRSVNEGFSGGEKKRAEVLQLELLKPKFAVLDETDSGLDV DALRIVSEGVNRAKEANQFGILMVTHYTRILKYIKPDIVHVFADGHFVKTGGPELADELE ENGYDQYLPEGADSESALA >gi|316916325|gb|ADCN01000015.1| GENE 17 17003 - 18238 1737 411 aa, chain - ## HITS:1 COG:Rv1462 KEGG:ns NR:ns ## COG: Rv1462 COG0719 # Protein_GI_number: 15608600 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Mycobacterium tuberculosis H37Rv # 38 401 23 390 397 281 42.0 2e-75 MTDNTTPVKEIKIPVADPNDPYAIPAAMPSSVDHAVRSFNAGDYPEPSRKQDEWRYTPIE RINEFFTVFKPSGETQIEVSMIDGSPLAEGVKLSQIKLGEGLSGTVSKPNDRVSAVEWES GRTATILELSGEIAQPVLVKVHGAGEDLDAFHLVIAAADKAHADVVVEHDGDARLAEGVE ITTGKDSHVSTTFVQEWAKTAKHVANHRIHVGEGASLRHSVVTLGGDIVRIRMDQDFGGE QGDLNMLGIYFVDPGEHIEHRTMVVHNHPDCKSRVVYKGALDGKGAHSTWVGNALIQPTA PGTDSYELNRNLVLTPGAIADSEPNLEIENGNIIGAGHASSVGRFDDEELFYLESRGIPE TDARKLVVRGFFGELVEEIGIPAISEHLMTVIDRRLARGENDAMAQVLEDK >gi|316916325|gb|ADCN01000015.1| GENE 18 18244 - 19743 1985 499 aa, chain - ## HITS:1 COG:Cgl1527 KEGG:ns NR:ns ## COG: Cgl1527 COG0719 # Protein_GI_number: 19552777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Corynebacterium glutamicum # 34 499 16 481 481 702 70.0 0 MVTENTAPNAAADVEMSQYVADRTRVNEDKIKKDDEIISQFGDYNYGWHDSDAAGEAAKR GIDENVVRAISADKGEPQWMLDMRLRGFKAFLEKPMPDWGVDLSGFNADDFKYYVKPIDK QAKSWDELPDDIRNTYDRLGIPEAEKNRLVSGVAAQYESEVIYNSIQEDLKKQGVIFVDT DTAVREYPELVKKYFGTVVPPEDNKFGALNTAAWSGGSFVYVPKGVHVDIPLQAYFRINT PAMGQFERTLIIADEGSYVHYVEGCTAPIWSEDSLHAAIVEIIVEKHARVRYTTVQNWSN NVYNLVTQRAYVREGGTMEWVDGNIGSKATMKYPACILAEPYAKASTMSLGFAGKGQYQD TGAKMIHLAPHTSSTIVAKSISRGGGRSAYRGLVKIVKGAYGSSNSTVCDALLVDDFSRS DTYPHVDVREDDVSMAHEATVSKISEDQLFYLMSRGLTEEEARGMIVRGFVEPISRELPM EYALELNRLVELQMEGSVG >gi|316916325|gb|ADCN01000015.1| GENE 19 19967 - 21562 1011 531 aa, chain - ## HITS:1 COG:no KEGG:BL0873 NR:ns ## KEGG: BL0873 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 531 1 531 531 995 99.0 0 MTEHLDDSTQQFAPLFGANNAVSGTVADSVDAAASDSIQGDEMRRRRIWPWVVIACLLVA LGAACGGGVWFFQDHVLPGTTLWGNSVTGKTEQEIADLINDQVDNTAVRAKYQGQSATFT LKDLGIEVDGEAIASDVINAQRGDAWWQQYAFWITHDVAPQINPELADGSVVDKALNIDA QEPVDAQVALNDNNSGFNVIAGENGQGANATSIAKQAISTVESLGSVQPQTVRVELDVTE PTITNAIADEAKTTLETLVNNAVAIKVADKDIATVNASMLGSAMRIDANQQSKLKDNEVR NGYVVFDADKLQQYYDEQIKPNLKLEREDKKVVVNNAGEVLSTETEGHDGIVIADGADTE VGARLAQVLATGTGSVNVDGKVDPKQEVKVAHRVAIDLSDRKLYAYENDTVVKTLNVVVA EGNDNVTGECVGMMCTPTGDFNVWQKLPSQDMSGTLNLADGTVETWDVKDVGFVNYFSSG CAIHRIAGGYVADAVMPSIANGSHGCVGIGWDVAEWFYNWCNMGTSVHIQV >gi|316916325|gb|ADCN01000015.1| GENE 20 21809 - 23470 2514 553 aa, chain - ## HITS:1 COG:ML1363 KEGG:ns NR:ns ## COG: ML1363 COG0504 # Protein_GI_number: 15827710 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Mycobacterium leprae # 11 552 6 551 590 753 67.0 0 MVRRTHGNSQEHVTKHIFVTGGVVSSLGKGLTASSLGRLLRSRGIHVLQQKLDPYINVDP GTMNPFQHGEVYVTEDGAETDLDIGHYERFLDVFLSQKANVTTGQIYQEVLRKERAGEYL GQCVQVIPHITNEIKSRMRAQASDDVDVIITEIGGTVGDIESQPFLEAAREVRRDLGPDN CMFVHVSLVPYISAAHELKTKPTQHSVMMLRQLGISPDALVLRSDRPLNQSIKDKISLMC DVDAEGVVNCVDAPSIYDVPKILFEEGLDAYVVRELGLPFHDVDWDEWADLLERVHHPKH EVNIAIVGKYIDLPDAYLSVTEAIKAGGFANWAKVNVKWVAADRCETTEGAAAALDNVDG IVIPGGFGIRGIDGKIGALKFARETKLPALGLCLGLQSMVIEYSRHVLGIEDANSSEFEP DCANPVIATMEEQKDIVAGKGDMGHTMRLGSYPAELEEGSLVAELYGTTHVTERHRHRYE VNVAYKDRLREGGLRISGQSPDGELTEFVELPQDVHPFYVATQAHPEFKSRPTKPHPLFA GLVKAALDHQAAR >gi|316916325|gb|ADCN01000015.1| GENE 21 23616 - 24191 414 191 aa, chain - ## HITS:1 COG:no KEGG:BLD_0609 NR:ns ## KEGG: BLD_0609 # Name: pepV # Def: dipeptidase # Organism: B.longum_DJO10A # Pathway: Lysine biosynthesis [PATH:blj00300]; Metabolic pathways [PATH:blj01100] # 1 191 266 456 456 375 98.0 1e-103 MGIDCENAESGPTTANGGLIIPANEFAEADKVLGAVSGETSEDAIVLHFDIRYAVGQAHE QIIERIQAQAEVAGGRIVDILNDDPYYVQADDPRVQLLTATYNDVLGCEARPVAVGDGTH ARFIPRALNFGPEFHADHVPAVDGIDLETPPFIAPGAGNAHGADEWASLKNLKTAFVLYA LGLVRLDQYLQ >gi|316916325|gb|ADCN01000015.1| GENE 22 24134 - 24508 100 124 aa, chain - ## HITS:1 COG:no KEGG:BL0875 NR:ns ## KEGG: BL0875 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: Lysine biosynthesis [PATH:blo00300]; Metabolic pathways [PATH:blo01100] # 16 110 47 144 428 172 84.0 3e-42 MNRTKPSSQSRVAADVALTNYFLLRFFKEHDHRFRHRVRILFGGSEEIALNDIKWFVANI GAPYQAIVTDGPFPVNNIQKGLLDVDVELPVGPQLPNGQKTHMAPAWVSIARMRKADRLP PMVV >gi|316916325|gb|ADCN01000015.1| GENE 23 24501 - 24947 640 148 aa, chain - ## HITS:1 COG:DR0778 KEGG:ns NR:ns ## COG: DR0778 COG0757 # Protein_GI_number: 15805804 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Deinococcus radiodurans # 4 146 2 142 143 145 46.0 3e-35 MTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCTEWGKDLGLEVEVRQTDDEAEMVHW MHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFRKRSVIS PVATGTITGMGFYGYKLALDAVAHLLSE >gi|316916325|gb|ADCN01000015.1| GENE 24 25111 - 26733 1691 540 aa, chain - ## HITS:1 COG:Cgl1583 KEGG:ns NR:ns ## COG: Cgl1583 COG0337 # Protein_GI_number: 19552833 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Corynebacterium glutamicum # 177 540 10 365 365 323 49.0 4e-88 MTARPRAVIIGMMGAGKTRVGKEVAHMLRLPFADADVEIEREVGMKIPSYFEEYGEPAFR EVEADLIADMLEDFDGIFSLGGGAPMTPSTQHALASYIDHGGRVVYLDADPAEAMERANR GGGRPMLNGNANSRWKKLFKQRDPVFREVANVHVHTRGLTPQGAAKKVIDMVSERAVHVT GAAIEPYDVVIGEGAMNHLVDVLGPKPAKIALIHTQPVQRHSDRARALLRQGGYEVSDIV IPDAEPGKTITVANGIWERLGNEGFTRSDAVVGLGGGAATDLAGFVAATWMRGVRYVNCP TSLLAMVDASTGGKTGINTPQGKNLVGSFYTPAGVLADTKTLATLPNDIFIEGLGEVAKS GFIRDPEILHILEDHAAELRAFDGSTFLGSPLEDVVAELIERTVKVKAYHVSSDLKEKGL REFLNYGHTMGHAIEKLEHFRWRHGNAVAVGMVYAAELAHLIGYIDQDLVDYHRSLLASM GLPTSWNGGSFDDVLALMHRDKKARGNELRFVVLDEIGHVVHLDNPPAEAVEEAFRRIQQ >gi|316916325|gb|ADCN01000015.1| GENE 25 26816 - 28003 1589 395 aa, chain - ## HITS:1 COG:MT2615 KEGG:ns NR:ns ## COG: MT2615 COG0082 # Protein_GI_number: 15842074 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 1 389 1 388 401 429 62.0 1e-120 MLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVRLL TGVRHGLTLGSPVAIEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGM RKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQTNPDLPL PTPDDLEALDASPVRTLDKEAEARIIERINEAKKASDTLGGVIEVLAYGVPAGIGTYVES DRRLDAALASAIMGIQAFKGVEIGDGFLEASRPGSQAHDEIVVNADGRIDRLSNRAGGIE GGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAMVR LTLAKYALDKFGGDSVAETRRNLESYLASWPEHMR >gi|316916325|gb|ADCN01000015.1| GENE 26 28067 - 28540 445 157 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0873 NR:ns ## KEGG: BLJ_0873 # Name: not_defined # Def: peptidase A24A, prepilin type IV # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 154 1 154 155 239 97.0 2e-62 MPYLFTLPGLLCGLALSIEDVRHRRVPIAWVAAGALLQLAADFAYGVVVNDLFVLLQALL FTVLCCLIQFALALLVPRSLGFGDVTALIPMGLSVGLFGLLPVVVWWLAMGVAGITWIAL WTRFDPQRTSPAHAGKVPYVPVILAGAIVAVAVGVLS >gi|316916325|gb|ADCN01000015.1| GENE 27 28708 - 29889 1455 393 aa, chain - ## HITS:1 COG:MT2630 KEGG:ns NR:ns ## COG: MT2630 COG1559 # Protein_GI_number: 15842091 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Mycobacterium tuberculosis CDC1551 # 34 387 26 408 417 122 26.0 9e-28 MTDDFNEFFDDNTHWVEQGSEPMRGAEPPEPPKSRKEMRKRRAQRRRKRISGIIIAIAIV ALLIGGGYFGVTKLIAWRDSRSNQSTAIADYPGPGYGEVEFTVSEGQGAAEIADNLLKAE VIKSTAAFTSVVNANSATLYPGTFTLKKHMAAIDVIAVLSDTNQAAGFLEVRPGERATDV FANAAKLSGIAQSEFDTIIKNKGKDILPNEAGGSFEGWLEPGTYNVKSMKSASEILKAMV DERIAKLDELGVPTGSDRERVMIIASIAEAEANKADYYGKVTQVIENRLEQGMSLGMDST VAYGNNVKPAQVTTEMTQDESNPYNTYKISGLPPTPISNPGDNAIQAALHPEGGNWLYFC TVNLDTGETKFAATADEHDQNVAELRKWQAENQ >gi|316916325|gb|ADCN01000015.1| GENE 28 29900 - 30337 197 145 aa, chain - ## HITS:1 COG:lin1537 KEGG:ns NR:ns ## COG: lin1537 COG0816 # Protein_GI_number: 16800605 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Listeria innocua # 1 142 8 137 138 69 35.0 2e-12 MGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQMDGT EGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAHKASN KHRPVVDQQSAVVILQTALDRTREQ >gi|316916325|gb|ADCN01000015.1| GENE 29 30367 - 33048 4164 893 aa, chain - ## HITS:1 COG:Cgl1594 KEGG:ns NR:ns ## COG: Cgl1594 COG0013 # Protein_GI_number: 19552844 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 1 891 1 886 888 729 46.0 0 MRTADIAKRYLDYFAKHDHLIVPSASLISPNPTTLFTIAGMVPFIPYLMGEQTPPKRRMA SNQKCVRTLDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYGFD PEKLWMTTFTDDDEARSMWINEGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDRGPA FGKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERLAYLL QGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVRPSNV GRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESAYGEE DAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQGVKV DEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDMSARAEVIGI MQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEVDDVQKPIKDL IVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGPQATQRGSEDA PNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALGAMHLFGEKYG DIVRVVSIGEDGWSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNA REHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMYESQLAASVPALVADTKNS AAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAA RKAGIKAGDLVRGAAKVLGGGGGGKPDFAQGGGVDASKIDEALEALKHEAQKA >gi|316916325|gb|ADCN01000015.1| GENE 30 33176 - 33412 362 78 aa, chain - ## HITS:1 COG:no KEGG:Blon_1603 NR:ns ## KEGG: Blon_1603 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 78 1 78 78 147 98.0 2e-34 MFKRIFWVGVGVAIGIVAVTKAQAYVKANTPDAARQFLLGPDQDNVPMKTLEGLVNEFNA TRRAREAELNRQYIERAN >gi|316916325|gb|ADCN01000015.1| GENE 31 33412 - 33810 599 132 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0868 NR:ns ## KEGG: BLJ_0868 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 132 1 132 132 224 100.0 5e-58 MGVGEIAGLIAAIAFAVLAGFMIYPLIRLGKMFDQISQTVRESGEHAIPALDEGVTTVKQ VNKSLEDVNKISAAASTTANNVGALTDLYGSFLGKPIIKIASTFYALKTTGQSFLAKNAA KTTVNDTAEKGE >gi|316916325|gb|ADCN01000015.1| GENE 32 34013 - 34687 759 224 aa, chain - ## HITS:1 COG:lin0907 KEGG:ns NR:ns ## COG: lin0907 COG0406 # Protein_GI_number: 16799979 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Listeria innocua # 3 208 5 206 224 113 35.0 3e-25 MILHLHLVRHGQTYFNRYNRLQGWSNSPLTESGVADAVKAGERLKGLTFAAAYCSDTTRA QQTAEKILDINEAAGNPRPALVTDMHFREQFYGYYEGLDMAMAWYAAGAPHGVKTYNQIV EKFGLGASRDFLKEADPFHDAESDEEYWTRVEGAFRLIADNPNLKDGDDVLQISHGNTLL SLGHRFGGPDLDLNERPANGSVTVIDFDTDKPFGEAVTIVSYGK >gi|316916325|gb|ADCN01000015.1| GENE 33 34840 - 35772 790 310 aa, chain + ## HITS:1 COG:BS_yrhL KEGG:ns NR:ns ## COG: BS_yrhL COG1835 # Protein_GI_number: 16079768 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Bacillus subtilis # 16 309 13 288 634 162 32.0 6e-40 MKPAPSRSSVPAHFRGIDGLRALAILGVIAFHTRPSLLQGGFIGVTMFFVITGFLATRSV LNMVDRTGSFGYGRYLIRRITRLWPVMLATIAVVPWLTWMFAPSLLQKVVSDSLPDALFA SNWVYIFRKVPYFEAAGLPSPLTHLWFLGVTMQFYLVWPLLMVVLGKITKSKWVRSMAIL VIMAASTADMVLLFDPANTSRVYYGTDTRLAELAAGALLAIWIAPSSRGTEAAEAGAASQ TVQIERQAGDKTGARLTIVCNVLGTAALAALLTGFWFANGYLSYMYQGGYLITAFISLCA LACAVNNDSI >gi|316916325|gb|ADCN01000015.1| GENE 34 35836 - 36831 871 331 aa, chain + ## HITS:1 COG:BS_yrhL KEGG:ns NR:ns ## COG: BS_yrhL COG1835 # Protein_GI_number: 16079768 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Bacillus subtilis # 2 328 313 632 634 102 25.0 9e-22 MHYPLLQFMNPATRTQALPWWGWVLEAVVVLAASEAFYQLVEAARKSVQMPRSQHAKPLP KAGYRLRPGAWVMSVIGLVTVVALTWAPVDWNGIAQARAIQLRPELAAPAKPVKKPAKPE PESSAINAANGETNTADANKNGSDSQPPIIKPIAEKVPNNLDISKYAYDPATESCNADMM MVGDSVTSGTSDAIQAAFPNAFIDGLPNRQLPQAVDVYQQDTAAGHSGSVVVFGLGTNGV ISNEQEVQQLIDLTGGKPTYFITIRMPYPWQENNNNTMLREAAKKNKNVGIIDWHGYSEG HSEYLNDDGIHPNMTGAYAYATMIRQAVCGQ >gi|316916325|gb|ADCN01000015.1| GENE 35 36922 - 37548 1047 208 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23334986|ref|ZP_00120224.1| COG0522: Ribosomal protein S4 and related proteins [Bifidobacterium longum DJO10A] # 1 208 1 208 208 407 100 1e-113 MTNVQRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRDRRRTESDYAVRMREKQRL RAQYGISEKQLRAAYEKATRTAGQTGNAMLTDLETRLDNLVLRAGFARTTAQARQFVVHR HILVDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGVHRDVLPAVPGYLDVNLPSL KATVTRKPEVEEIPVQVNIQYVVEFYAR >gi|316916325|gb|ADCN01000015.1| GENE 36 37747 - 38715 928 322 aa, chain - ## HITS:1 COG:FN1348 KEGG:ns NR:ns ## COG: FN1348 COG1136 # Protein_GI_number: 19704683 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Fusobacterium nucleatum # 46 318 1 218 223 188 39.0 1e-47 MTETTTPLQPTTVEPTKLQPTTPAQPNAPTAPDSPHVTETPSPDHLLTLTDLTRQFVRRG TPFDAVSHVNLTVDAGEFIAIVGRSGNGKSTLINMVAGLIRPTSGTVSVAGRNVADLGDK ALSVLRNRTIGFVTQSQTLLGNLTVLDNVILPATMFPEPLPFAQNAEATDAVAQAAATND EAAADSAADPFMPDVIAPITDQENTPSNTAASRSDLFATRARTLLTQLGVADLADSYPRE LSGGEMRRVSIARALMNQPSLLIADEPTGDLDQESTDIVMRLLRDQANNGTAILMVTHDP DALEYADRVYRMDAGVLSIASV >gi|316916325|gb|ADCN01000015.1| GENE 37 38717 - 39934 1458 405 aa, chain - ## HITS:1 COG:FN1349 KEGG:ns NR:ns ## COG: FN1349 COG0577 # Protein_GI_number: 19704684 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 403 1 399 401 234 32.0 2e-61 MPSHIALRGLPIENLKRKPFRTGALLAVVTILALTFFGGTMLTMNLNTGMTSMEKRLGAD LMVVPQNTVQKAEALLTNGNPSTFYFTKDIADEVMQADGIAQATEQTYISSLAAACCAEK LQIIGYDPDTDFVIEPWVASQFEGPLEDGQMIAGANVNVSTDGTIELYGRSWPVVAQLAN TGTSLDNSVFINQNTVPDMVAASAKVSKQVMSAEYAGKAVSTVMIKTQQGYEAQTVAENI KRLDSRFADLGYVYPGSITANTRTSLTALVTYLKIFVAVIWVMGVIVLLAVFASSVNERK REFASLRIMGATRGMLNAIILKESAIIGLIGGVIGVGAASLVIFPFSSLIGKQLQLPYLQ ASPVAVIGFIAVTIVCSTVIGIIGSLATMWRLGRPEAYLTLREGE >gi|316916325|gb|ADCN01000015.1| GENE 38 40025 - 40423 633 132 aa, chain - ## HITS:1 COG:no KEGG:BLD_0626 NR:ns ## KEGG: BLD_0626 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 132 1 132 132 206 100.0 2e-52 MKNKLFASVPNILFGALITIAPQTFAHACTGHDMPGACHYSQQAATGIGVVILVFGVVAL FVAPQIRIGLNIAAAADALLLLAVPTFLIGICKGAMMHCRMVMLPTLIVLGVLTIVFAAI AIWLDSRAAKRN >gi|316916325|gb|ADCN01000015.1| GENE 39 40568 - 43222 3683 884 aa, chain - ## HITS:1 COG:Cgl0831 KEGG:ns NR:ns ## COG: Cgl0831 COG0210 # Protein_GI_number: 19552081 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 14 701 12 691 763 689 52.0 0 MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRG ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI VGYAADNAQQEAQWVATEIARLHAEAGIAYSDMAIMYRANAQSRSLEEALINTNQPYQLV GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSF FYALMHLDEIEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEK SVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTL MTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRAA VRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRASWETDGFADDLGGWDDDDFGG AAFGGSSTFGSRGSSGSGSSYGSRSRYGSSYGSRSGSSSYGSRSRSGSSYGSSGSGSRSS YGSRSRSGSSSGSYGGTRGGKVTTRRTAPKSDSTGSAVPSSKLTKDNGLNIADFAVGDMI SHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL >gi|316916325|gb|ADCN01000015.1| GENE 40 43339 - 43920 849 193 aa, chain + ## HITS:1 COG:PA5298 KEGG:ns NR:ns ## COG: PA5298 COG0503 # Protein_GI_number: 15600491 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Pseudomonas aeruginosa # 1 191 1 188 190 177 51.0 1e-44 MQELEERIQSEGTVKAGNVLKVDAFLNHQCDVRLFDRMGSAWAAHFAGKHITKILTIEAS GIGIACVAAQHFGNVPVVFAKKAQSINLDGDQYTTTVYSFTKQKEFPVIVAKKYLNAGDH VLLIDDFLANGKALRGLIDLCEAAGATVEGIGIAVEKGFQGGGDALRAEGYDVDSLAIVE SMNPETGEITFRH >gi|316916325|gb|ADCN01000015.1| GENE 41 43971 - 45335 386 454 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 26 438 15 421 447 153 26 2e-36 MSEKKTNHSVSFEALSSLDAPVSFWKGIPFGLQHVMAMFVANLAPIFIVASAAKMTPAQS ATIIQSGLLVAGLGTCLQLYGAWLIGSRLPMVTGISFTYVAAAVAICADKGYGAVVGAVM VGGLLELVLGLTAKYWRRFVPPIVSAIVVTSIGFSLLNVGATSFGGGSGAKDFGSWQNLT LGLISLVACLAFQLLMKGTAKQLSVLFGLVVGYVAAICMGKVDFSGFQNLAIVSVPQFMP FKPEFDWGSIISIGLLYVVSSVEVLGDTAALTKVGLNRTPTERETAGAIAGDGLISTVSG LFGCLPLTSFAQNIGLVAMTKVVNRKVILSGGLILVLASFVPAIAEVFNSLPQAVLGGCT IMMFGNIILSGFQMIAEAGFTQRNITIAALSLTIGIGFTQVSDIFTQFPALFQQIFASNC IAVAFVVAVILNAVLPSEEHFLSAPKEAPAADAE >gi|316916325|gb|ADCN01000015.1| GENE 42 45465 - 45674 233 69 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756262|ref|ZP_02163377.1| 50S ribosomal protein L20 [Kordia algicida OT-1] # 1 65 1 65 67 94 67 1e-18 MTIRINLDVMMAKRKIGVGELAEQIGITPANVSILKNGRAKAVRFTTLDAICKALDCQPG DILEWEDDD >gi|316916325|gb|ADCN01000015.1| GENE 43 45681 - 45941 284 86 aa, chain - ## HITS:1 COG:no KEGG:BLD_0631 NR:ns ## KEGG: BLD_0631 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 86 1 86 86 137 98.0 1e-31 MKNYMNRWVLLALKAIVILVWLACLWGQLFAVPGLSGALAGLYPSQTSMHWPYLIMGVLF LFCIEAAFVAVWKLFSLSGSGANSSR >gi|316916325|gb|ADCN01000015.1| GENE 44 46191 - 46521 265 110 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 110 1 110 358 191 93.0 9e-48 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEW Prediction of potential genes in microbial genomes Time: Fri May 13 12:47:41 2011 Seq name: gi|316916247|gb|ADCN01000016.1| Bifidobacterium sp. 12_1_47BFAA cont1.16, whole genome shotgun sequence Length of sequence - 92450 bp Number of predicted genes - 86, with homology - 78 Number of transcription units - 51, operones - 21 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 23 - 451 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 340 - 394 -0.5 2 2 Tu 1 . - CDS 444 - 1265 912 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 1453 - 1512 2.6 3 3 Tu 1 . + CDS 1553 - 2491 513 ## BLD_0633 Co/Zn/Cd efflux system component 4 4 Tu 1 . - CDS 2580 - 2981 489 ## COG0346 Lactoylglutathione lyase and related lyases + Prom 2879 - 2938 2.5 5 5 Tu 1 . + CDS 3140 - 3754 836 ## COG1335 Amidases related to nicotinamidase 6 6 Tu 1 . + CDS 4006 - 5484 1515 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 5632 - 5678 1.3 - Term 5410 - 5459 3.9 7 7 Op 1 . - CDS 5489 - 6901 1303 ## BLD_0637 ABC-type multidrug transport system permease component 8 7 Op 2 . - CDS 6888 - 8126 1304 ## BLJ_0839 hypothetical protein 9 8 Op 1 . - CDS 8227 - 9210 1178 ## COG1131 ABC-type multidrug transport system, ATPase component - Term 9238 - 9282 5.0 10 8 Op 2 . - CDS 9310 - 9417 148 ## - Prom 9473 - 9532 2.3 + Prom 9374 - 9433 2.2 11 9 Op 1 19/0.000 + CDS 9596 - 10948 756 ## COG4585 Signal transduction histidine kinase 12 9 Op 2 . + CDS 10948 - 11601 796 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 11766 - 11801 1.0 13 10 Op 1 21/0.000 - CDS 11786 - 12409 998 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 14 10 Op 2 . - CDS 12427 - 13479 1420 ## COG0306 Phosphate/sulphate permeases 15 11 Op 1 . - CDS 13599 - 13796 302 ## BLD_0645 hypothetical protein 16 11 Op 2 . - CDS 13853 - 16252 3882 ## COG1966 Carbon starvation protein, predicted membrane protein 17 12 Tu 1 . + CDS 16527 - 17792 955 ## COG0366 Glycosidases - Term 17656 - 17695 1.1 18 13 Op 1 2/0.000 - CDS 17821 - 18405 495 ## COG1309 Transcriptional regulator - Prom 18534 - 18593 1.8 - Term 18539 - 18584 15.0 19 13 Op 2 . - CDS 18604 - 20790 2792 ## COG0513 Superfamily II DNA and RNA helicases - Prom 20969 - 21028 2.6 20 14 Tu 1 . + CDS 20945 - 21157 80 ## - Term 21121 - 21154 0.0 21 15 Tu 1 . - CDS 21170 - 22459 654 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 22 16 Op 1 . - CDS 22564 - 23394 1263 ## BLJ_0828 phosphoglycerate mutase 23 16 Op 2 . - CDS 23445 - 24026 573 ## BLJ_0827 hypothetical protein 24 17 Op 1 . + CDS 23949 - 24113 120 ## 25 17 Op 2 . + CDS 24182 - 24736 604 ## BL0913 hypothetical protein - Term 24737 - 24776 1.4 26 18 Op 1 . - CDS 24856 - 26019 816 ## COG4260 Putative virion core protein (lumpy skin disease virus) 27 18 Op 2 . - CDS 26102 - 26308 140 ## BLJ_0823 hypothetical protein 28 18 Op 3 . - CDS 26392 - 27936 1493 ## BLJ_0822 hypothetical protein 29 18 Op 4 . - CDS 27933 - 28043 153 ## - Prom 28086 - 28145 1.6 + Prom 28061 - 28120 4.7 30 19 Op 1 . + CDS 28370 - 28810 479 ## BL0917 hypothetical protein 31 19 Op 2 . + CDS 28872 - 30572 1239 ## COG0515 Serine/threonine protein kinase + Term 30582 - 30630 4.1 - Term 30435 - 30469 -0.4 32 20 Tu 1 . - CDS 30610 - 32100 1569 ## COG0477 Permeases of the major facilitator superfamily - Term 32333 - 32375 9.3 33 21 Tu 1 . - CDS 32413 - 34464 1857 ## COG0477 Permeases of the major facilitator superfamily - Prom 34702 - 34761 1.9 34 22 Tu 1 . + CDS 34510 - 34791 141 ## BL0921 hypothetical protein + Term 34966 - 35002 0.0 35 23 Tu 1 . + CDS 35068 - 35433 565 ## COG3304 Predicted membrane protein + Term 35670 - 35703 -0.9 - Term 35457 - 35504 12.6 36 24 Op 1 . - CDS 35523 - 37031 1156 ## nfa6900 hypothetical protein 37 24 Op 2 . - CDS 37024 - 38193 718 ## LAF_0685 hypothetical protein - Prom 38424 - 38483 2.1 + Prom 38176 - 38235 2.6 38 25 Tu 1 . + CDS 38431 - 38601 134 ## BLD_0662 hypothetical protein 39 26 Op 1 . + CDS 38723 - 39601 643 ## BLD_0663 hypothetical phosphoesterase/phosphohydrolase 40 26 Op 2 . + CDS 39685 - 41127 723 ## COG5324 Uncharacterized conserved protein 41 27 Tu 1 . - CDS 41169 - 41471 108 ## + Prom 41199 - 41258 1.5 42 28 Tu 1 . + CDS 41320 - 41520 286 ## BL0925 hypothetical protein + Term 41547 - 41593 0.7 - Term 41891 - 41938 9.4 43 29 Op 1 . - CDS 42002 - 43096 1983 ## COG0012 Predicted GTPase, probable translation factor 44 29 Op 2 . - CDS 43114 - 43914 879 ## COG0345 Pyrroline-5-carboxylate reductase 45 29 Op 3 . - CDS 43989 - 45332 1556 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 46 30 Op 1 . + CDS 45389 - 45499 81 ## gi|212716973|ref|ZP_03325101.1| hypothetical protein BIFCAT_01919 47 30 Op 2 19/0.000 + CDS 45510 - 48119 984 ## COG4585 Signal transduction histidine kinase 48 30 Op 3 . + CDS 48196 - 48942 584 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 48972 - 49032 12.0 - Term 48968 - 49009 9.6 49 31 Op 1 36/0.000 - CDS 49034 - 51676 3060 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 50 31 Op 2 . - CDS 51718 - 52509 291 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Term 52691 - 52745 12.1 51 32 Tu 1 . - CDS 52858 - 54174 1934 ## COG2873 O-acetylhomoserine sulfhydrylase 52 33 Tu 1 . + CDS 54650 - 55522 1014 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase + Term 55570 - 55602 1.7 53 34 Op 1 2/0.000 + CDS 55759 - 56262 224 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 54 34 Op 2 2/0.000 + CDS 56321 - 57856 741 ## COG0606 Predicted ATPase with chaperone activity 55 34 Op 3 . + CDS 57853 - 59553 888 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 56 34 Op 4 1/0.000 + CDS 59610 - 60611 1215 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 57 34 Op 5 36/0.000 + CDS 60608 - 61474 893 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 61481 - 61540 1.6 58 34 Op 6 . + CDS 61570 - 62535 1162 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 59 34 Op 7 . + CDS 62629 - 63294 1083 ## COG4122 Predicted O-methyltransferase + Term 63304 - 63341 9.8 60 35 Tu 1 . - CDS 63340 - 64281 1082 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Term 64367 - 64405 8.5 61 36 Tu 1 . - CDS 64453 - 65871 1669 ## COG3004 Na+/H+ antiporter - TRNA 66059 - 66132 73.6 # Arg ACG 0 0 - TRNA 66162 - 66235 73.6 # Arg ACG 0 0 - Term 66256 - 66298 1.4 62 37 Tu 1 24/0.000 - CDS 66352 - 67770 258 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 - Term 67831 - 67876 14.4 63 38 Op 1 5/0.000 - CDS 67892 - 68593 1080 ## COG0740 Protease subunit of ATP-dependent Clp proteases 64 38 Op 2 . - CDS 68599 - 69222 1066 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 69249 - 69308 2.1 65 39 Tu 1 . - CDS 69328 - 69708 408 ## Blon_1709 hypothetical protein 66 40 Tu 1 . - CDS 69824 - 71290 1295 ## COG0038 Chloride channel protein EriC - Prom 71393 - 71452 1.6 67 41 Tu 1 . + CDS 71171 - 71389 143 ## - Term 71398 - 71442 13.7 68 42 Op 1 . - CDS 71474 - 72853 2372 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 69 42 Op 2 . - CDS 72908 - 74209 1101 ## COG0349 Ribonuclease D 70 42 Op 3 . - CDS 74206 - 74844 576 ## BLD_0691 hypothetical protein 71 42 Op 4 11/0.000 - CDS 74907 - 75788 1123 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 75822 - 75863 12.2 72 42 Op 5 . - CDS 75898 - 78273 3890 ## COG1882 Pyruvate-formate lyase - Term 78449 - 78490 5.5 73 43 Op 1 . - CDS 78539 - 78763 392 ## BL0952 hypothetical protein 74 43 Op 2 . - CDS 78816 - 80513 2425 ## COG0171 NAD synthase + Prom 80601 - 80660 1.6 75 44 Tu 1 . + CDS 80745 - 80987 72 ## - Term 80671 - 80717 -0.9 76 45 Tu 1 . - CDS 80862 - 82013 1362 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 82033 - 82077 10.2 77 46 Op 1 32/0.000 - CDS 82102 - 82788 1185 ## COG2011 ABC-type metal ion transport system, permease component 78 46 Op 2 10/0.000 - CDS 82785 - 83990 1501 ## COG1135 ABC-type metal ion transport system, ATPase component 79 46 Op 3 . - CDS 84124 - 85104 1908 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 80 46 Op 4 . - CDS 85064 - 85213 64 ## 81 47 Tu 1 . + CDS 85297 - 86127 811 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 86188 - 86221 6.1 - Term 86218 - 86248 -0.4 82 48 Tu 1 . - CDS 86249 - 88726 3910 ## COG3957 Phosphoketolase - Prom 88825 - 88884 1.8 + Prom 88900 - 88959 2.1 83 49 Tu 1 . + CDS 89172 - 90734 2267 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 90850 - 90889 9.0 84 50 Op 1 3/0.000 + CDS 91233 - 91583 334 ## COG0798 Arsenite efflux pump ACR3 and related permeases 85 50 Op 2 . + CDS 91604 - 92050 263 ## COG0394 Protein-tyrosine-phosphatase + Term 92196 - 92222 0.1 86 51 Tu 1 . - CDS 92006 - 92449 175 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916247|gb|ADCN01000016.1| GENE 1 23 - 451 199 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 2e-14 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK >gi|316916247|gb|ADCN01000016.1| GENE 2 444 - 1265 912 273 aa, chain - ## HITS:1 COG:CAC2936 KEGG:ns NR:ns ## COG: CAC2936 COG0596 # Protein_GI_number: 15896189 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 22 265 24 267 275 131 30.0 2e-30 MAQLQPYCAIEGNDDGLPVVFVHGMGVDHRSLMMLDKAFDGNDSIRRIYLDLPGFGRTPA LPEHACGLPEIADWLQTAIDGLVGKAAPFAMIGNSMGGALVREVLAREPRRVAGMALIAP VVDPQHAGRHVAEHVVAQPNPKLTHSLPQEQVFDFITMGVNQSFDAWRRYQRFILPGVAL CDRAACKRLDQRYWLADNPEEMLGIYAGPVLIVTGKQDQIVGYEDQQALLPHYPNATFVT LDNAGHNAHIDQPEAVITLVREWVAHMAFPMSI >gi|316916247|gb|ADCN01000016.1| GENE 3 1553 - 2491 513 312 aa, chain + ## HITS:1 COG:no KEGG:BLD_0633 NR:ns ## KEGG: BLD_0633 # Name: czcD2 # Def: Co/Zn/Cd efflux system component # Organism: B.longum_DJO10A # Pathway: not_defined # 1 312 1 312 312 552 99.0 1e-156 MGQQVRYGRRRSHGAGALIAAVILVVAALIAAWTLLPRLFTPRETARTAEEAYCAAVSSD GARRTLTPDQAQNAALIANIAVTRGLPDHAATVAIATAMQESRLTNLDYGDLDSLGLFQQ RPSQGWGTAEQVSDMTYATNIFYDHLLQVPDWETIPVEDAAQEVQRSGYPELYATWDAMA RAWASGLTGEQSAGVTCALEPATSSDADGLVAAIGGTLPNVNVSVVPPNGKTGTNNGAAT NTASTTLTITLPDGLSADNRTRLCWQTAGWLVTHARQYGIDALHADGMDWNRKAGTWIGT ETAEQTITFTLA >gi|316916247|gb|ADCN01000016.1| GENE 4 2580 - 2981 489 133 aa, chain - ## HITS:1 COG:mll0128 KEGG:ns NR:ns ## COG: mll0128 COG0346 # Protein_GI_number: 13470424 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Mesorhizobium loti # 1 127 1 121 127 101 48.0 4e-22 MLDHLTLHVKDIDRSITFYKQALAPLGYIVKAHHEPTLGFGVDDGTLHSDFYVSPIEGLE AEASPVTPVTHIAFLADSQQAVQAFHAAALAAGGRDNGAPGPRPYHPGYYSAFVLDPDGN NIEAVVDWAHSNE >gi|316916247|gb|ADCN01000016.1| GENE 5 3140 - 3754 836 204 aa, chain + ## HITS:1 COG:MT2103 KEGG:ns NR:ns ## COG: MT2103 COG1335 # Protein_GI_number: 15841531 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Mycobacterium tuberculosis CDC1551 # 3 203 2 185 186 155 43.0 3e-38 MTKALIVVDVQPTFCEGGELGVAGGNAVAERIADYVNAHRSEYAYIATTQDWHIEPGAHW SAEPDFVDTWPKHGAAGTMNAELHPAIKALNIEHHFKKGQYSAAYSGFEGIEDNTDRIQT REEVEAEQSAGKTLANALKAAGVSRVDVVGIAESHCVKDTSLDAKKLGFEVTVFEDLTVP VSEELGVAARKQMAAGGITLAESR >gi|316916247|gb|ADCN01000016.1| GENE 6 4006 - 5484 1515 492 aa, chain + ## HITS:1 COG:Cgl0025 KEGG:ns NR:ns ## COG: Cgl0025 COG2865 # Protein_GI_number: 19551275 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Corynebacterium glutamicum # 13 421 10 419 563 188 31.0 2e-47 MVDDYTAKMTELIELMRLIGNDTQQCEVKECKRKISSTITDTLSAFSNGSGGWIILGLSE KNGFTPVEGFDARAMQEALSQACEKMTPVVRPVIVTCPFEGANLVFARIDEMLPRDKPCF TTALGPHGGSFIRTGDGDRRMTSYEVDRLIEEHLQPTYDLDIVPDATTDDLDPQLVSGLL ARVREQHPRTFADRDGIDVLLDLQVLRHDDSDESEVVGILRPTLAGLLALGRYPQKFYPR LGISIAVFPGTSRDDVFRGDERLVASKSVVGSIPVMIDDAVDSLMRWIGAKKPDYPPLVL REAIANALTHRDYSPDARGTQVHISVFTDRIEITNPGGLYGMVTHDVLASPHPVTGAPFV STRNQFLFTLLESTPYPGGGFVNPEGGDGYQRIAAALREAGIEPATTRNDINTFTMTITK QRTMANSSPGDVVKAIMTVLERHSAMSVKEIMRELQLTPLAATSGMRELMKEGRVARVKF ADDPAQRYRLKG >gi|316916247|gb|ADCN01000016.1| GENE 7 5489 - 6901 1303 470 aa, chain - ## HITS:1 COG:no KEGG:BLD_0637 NR:ns ## KEGG: BLD_0637 # Name: not_defined # Def: ABC-type multidrug transport system permease component # Organism: B.longum_DJO10A # Pathway: not_defined # 1 470 1 470 470 808 99.0 0 MNTCKATLRVLFAHRVYLMIYLVFIGILMMSISWAMLTSASGSMSAVFESTKTRVAIIDR DSDRGDIATSMRAYLRDSSELVDLDDTSETLQQAVASNWVDLIVIIPDGFADDYVAAAAD GDNPPNVDTVTSYASGSGSMARMNVGGFLSLTRTALIGAQTRVDQAALAGMMNATGGAAG FDGASLDQDMLDSLPEGQVDKPDIKDLSQAAKMAAESASDTDVNHQIAVVDTPTEESASA ADTAVSGFGGTMKTALYPLSLAMTICGSMILGAFTTGEVRRRLTASPRRMVLMGLQRLLT LGGFALVVCVGYLVLSIGLMMAAGLDPLHLSVGGVLMTFGATCVYALMTVACGFMLSEFG LSEEAANRFANIFGLLIMFTSGVALPIDMMPGVMVTIAKFLPGWWYCTAIDNALGFGTAA ETGISVAGWSGSLGLVALFGVMFICIGLAAGRFRRSRPALAAPATTQLAE >gi|316916247|gb|ADCN01000016.1| GENE 8 6888 - 8126 1304 412 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0839 NR:ns ## KEGG: BLJ_0839 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 412 1 412 412 766 99.0 0 MWTTFLVALKANLRNRSALFWMTVFPIVLATMFNGLFGGLAEAYELKPVPMAVIEDTRWQ QADGARTFVDALAGETESASDDTTYAEIDQKLLTITTVGTVKEAEQRLADGTANGYLTAD NNGRLAMTVSRETAVTAKDSTQNSGLDISLAALRSVIDLYNRTDAVTRQTIADNPQAALS RNFWNSVGQNVDMTHETTLTHFQPDEIARYYYALLAMSCMMAMGYSISTVAAAQANLSAL GIRRTVAPLSRAKQLVAGFLSCWLCSSVALSIALAYIRLACNVSLGGREPAAILAVIIAS FMTSSAGTLLGAVPKLSYNTKYGLSTGISCTLSLFTGLYGGFAMQISDWIARNAPILGTI NPAQQVTNLFYDILYYDSYRPFITTCIILLAMSAVFLLAGIAMLRRQRYEHL >gi|316916247|gb|ADCN01000016.1| GENE 9 8227 - 9210 1178 327 aa, chain - ## HITS:1 COG:CAC0241 KEGG:ns NR:ns ## COG: CAC0241 COG1131 # Protein_GI_number: 15893533 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Clostridium acetobutylicum # 18 327 1 310 310 270 41.0 4e-72 MTTDNRASEHDSTTNPALAVHVSQLVKRYGDMVALDYFDLDVNQGEIFGLLGPNGSGKTT AINCILALLTYDSGTIRLFGQPMTPTSYALKRRIGIVPQNVAVFNELTVTENIDYFCSLY VPKKTDRAPLVEESIEFVGLQDFRKFRPGKLSGGLLRRLNIACGIAHKPDLIFFDEPTVA VDPQSRNSILEGIQRLNQAGATVIYTSHYMEEVEQICDRILIMDHGRHLALGTADELKNM IDTGERITIETLDLADSAMAEVRALPCVIEATYDGKELDVRCRRGEHNLTDVLDAVKRSG ANIGHLTSRPPTLNDVFLELTGKALRD >gi|316916247|gb|ADCN01000016.1| GENE 10 9310 - 9417 148 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MITQSHRASNYSMDEISLMPVDKVYKAMQTDAEGL >gi|316916247|gb|ADCN01000016.1| GENE 11 9596 - 10948 756 450 aa, chain + ## HITS:1 COG:DRA0009 KEGG:ns NR:ns ## COG: DRA0009 COG4585 # Protein_GI_number: 15807681 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Deinococcus radiodurans # 209 391 131 315 336 75 31.0 2e-13 MRVLAEMGLLLVLCLALAWLVGVRFDSVFIAGLLLAVSVAGLVEWLRPSQWSWVLCTAYL VIAVAVPSWCAFMPLIAYDTARLPALASTGARAGALTAASGRSPSVLRTAASHRSLADAI RSAPWLSVAARWIWVLPLIALWFARSTDRLQTLVMTLVALLGFVLGRARASSDEARRALL HAQDRARESSRATRSRIADIDEERAQSVRMATLGERTRIAREIHDNVGHLLTRAIMQAQA GKTVAEATNDTVAAQGFATLGATLDDAMTMVRRSVHDLEDDGTDFAAQIDDAVTSFDGIS PGFAVTLANDIAKAPAPVSRCFATVIREALSNVVHHSAAHEASVTLRDFPAFWQLVIQDP GPAVSESDGSRTAAVRPRAMRATHVGSRLAADGVADMRGSADELMRGMGLADIESRVRAL GGTAVCGPYEDGWRVFVSVPKKRWTMESRD >gi|316916247|gb|ADCN01000016.1| GENE 12 10948 - 11601 796 217 aa, chain + ## HITS:1 COG:CAC0240 KEGG:ns NR:ns ## COG: CAC0240 COG2197 # Protein_GI_number: 15893532 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Clostridium acetobutylicum # 1 213 1 205 208 122 35.0 5e-28 MRIAIVDDDPIVCQSLETILTATGTAEVLWTANDGDAAVRRYFETPASRPDVLLIDIQMP GTSGLDAAREILATDPAARILFLTTFADQSYIAQAMGLGAKGYLIKQDVAAAGPALQAVM AGQVVLGAEVLGKLTERTPDPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRDIAA RLFLSEGTVRNRISAILDKLGLTNRTQLAILWLNAHR >gi|316916247|gb|ADCN01000016.1| GENE 13 11786 - 12409 998 207 aa, chain - ## HITS:1 COG:CAC3094 KEGG:ns NR:ns ## COG: CAC3094 COG1392 # Protein_GI_number: 15896345 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Clostridium acetobutylicum # 5 207 7 210 210 113 31.0 3e-25 MARQKDVFYFDGFRRSADYACQAAKLLSEAMHDFNPDQLRERMDSMHAIEKSADEVRHDM MDELVTAFITPFDREDIDELGHVLDDVTDSIEGVLNRMYYDNVTDMRDDAVQMSDMVVRA TESICELVNELPRFRHSKTLRELVFAINTIETDADHLFIESMRTLHTTCTDPLQVFAWHD VYRHLEQCSDDCERVANTIDSIVMKNS >gi|316916247|gb|ADCN01000016.1| GENE 14 12427 - 13479 1420 350 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 30 350 20 335 335 182 35.0 7e-46 MDVSLAHFLQQVLSNPALTVTTLLTLGVIFVNGWTDAPNAIATCVTTRCMRVRSAVIMAA IFNFLGVFIMTQLNASVASTISNMVDFGGDTNAALIALCAALFSIVVYSVGASLLGIPTS ESHSLIAGLSGAAIAIQGGIGGINMGEWVKVLYGLVASLLFGFAVGWLVCKAVTLICAGM DRRRTNGFFTYAQIVGAAAMSFMHGAQDGQKFIGVLFLGMAFCNGQPSVTGVMIPVWLMI LCSTIMGVGTSVGGERIIKSVGQDMVKLEKYQGFSADLSSALCLLVMTVLGIPVSTTHTK TSAIMGVGAVRRLSAINFGVVRDMMLTWVFTFPGCGLISFVMAKLFMVVF >gi|316916247|gb|ADCN01000016.1| GENE 15 13599 - 13796 302 65 aa, chain - ## HITS:1 COG:no KEGG:BLD_0645 NR:ns ## KEGG: BLD_0645 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 65 1 65 65 128 100.0 5e-29 MLGKLVAVWHGIVWYLREISGEARYDHYLEHFAAEHPGETPMSEVEFIRAREEYDRLHPN TSCCC >gi|316916247|gb|ADCN01000016.1| GENE 16 13853 - 16252 3882 799 aa, chain - ## HITS:1 COG:L13150 KEGG:ns NR:ns ## COG: L13150 COG1966 # Protein_GI_number: 15672391 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Lactococcus lactis # 19 780 9 777 784 689 47.0 0 MTTAAAQAPAPGKLEFKDDYTPDEAERVIRNSKGLPVGVRPKMVWTWKKALLWAAIAIVC ACGWAILAVSRGERISAIWFLVVALSSYAIAYRFYAYYIQIKIMRTDDANATPAERVHDG ANFERTDRRVLFGQHFAGISGAGPLVGPILAAQMGYLPSTLWIILGVIFAGAVQDMLVLW ISAKRRGRSLGQMATDEMGKFGGMILSIFLVVMTAIAMAFLALVAIKAMAASPWAVFSIG MTIPIALIMGCYQRFLRPGRVIETTLLGFVLLVLDIVAGGWIASIPAVAAVFTLDAKQLV IALVIYSFAAAALPHWLLVTPRDYLSTLMKIGTLVLLVIGIIIANPSVKVPGLTELASTS TGPTFSGNLFPFLFITIACGALSGFHGAVSSGLTPKAVEKENQIRMIGYGSMLVESFTAV IALIAAITISQGVYFSTNMSAAQITAASGVSISATSTPGEQADAAVKAVESMKVSDIEGN QMQVTWDSVDENGAAKTYEGAGALEQAAADIGETSIVSRTGGATTFAMGMANFLKSYLGG HDSMAFWYHFAIMFEALFILTTVDNGTRVARYQIGEMLGNVRKLKKFADPTWKPGNIITT LIAAALWGGLLWMGVSDANGGINAMVPIFGISNQLLAAACFVLITVCVAKMGYWKHLWIP VVPLVWDIAVTFTADFQKIFGPLSYFTTASKYQAQIDSGELTGEALTNAKAALSNAYLDG VLSVFFLVMMGVFVVVGIVVVARTFAAGKYGAETTSEEPFVESQWFAPSSLVATALEKKV QREYSAKLHELVRNGQVAA >gi|316916247|gb|ADCN01000016.1| GENE 17 16527 - 17792 955 421 aa, chain + ## HITS:1 COG:Cgl0864 KEGG:ns NR:ns ## COG: Cgl0864 COG0366 # Protein_GI_number: 19552114 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Corynebacterium glutamicum # 4 415 3 377 386 385 49.0 1e-107 MPDWVKYGVFWHVYPLGFCGADIRPAGPRRFHGRGLDAIIPWLEYVRDLGASGLLLGPVF ESATHGYDTLDHMHIDVRLGGDAAFDQLVAACRDMGLQVMLDGVFNHVSRNHPAVQAALD ETAGRLNPADNPWHGLVRAHVGDNGEPALDVFEGHGDLVALDHSADETVDYVVHVMSHWL DRGAAGWRLDAAYAVPSPFWARVLPQVKAAHPYSWIFGEVIHGDYPRIIEESTMDSITQY ELWKSIQHALETENFFELDWNLKRHNAFLDSFVPQTFIGNHDVTRIASQIGPAKAALALA VLMTVGGVPSIYYGDEQGYVGVKQERFGGDDDVRPKFPGSPAELSTLGEPTYRLHQALIA LRRRNPWLLDARTEAVKLENKHFVYRSTSADAQHSLTVDLNIEQSPTFTIRNADGSTAYQ W >gi|316916247|gb|ADCN01000016.1| GENE 18 17821 - 18405 495 194 aa, chain - ## HITS:1 COG:mlr3102 KEGG:ns NR:ns ## COG: mlr3102 COG1309 # Protein_GI_number: 13472716 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 1 162 1 172 214 63 26.0 3e-10 MTQSQPRSKRTPTLEIHGRILDAARRIVERDGVDGLTIRALSAQADVSPTSIYQHIGGKQ AVCDALIDTYFTDLREQLIAIDESDPVLRLRRAGIIYREHALDAPGIYALVWMGQASDSA QHCLDAITQIIRYGQAASVFRGDDPHLIASSIWVSIHGFIQFELRSAQPRTRGRERVDRS YGYLLDLLIRGIQR >gi|316916247|gb|ADCN01000016.1| GENE 19 18604 - 20790 2792 728 aa, chain - ## HITS:1 COG:Cgl1415 KEGG:ns NR:ns ## COG: Cgl1415 COG0513 # Protein_GI_number: 19552665 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Corynebacterium glutamicum # 27 485 3 439 448 292 40.0 2e-78 MPRNNFDDRDDSADFQMNDSAESRPLTFGELGVPGPLVRVLAADDKKTAFPIQADTLPDS LAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKKASLEERRAD DFLPHPRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAGADIVV ACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATL DHGVDEVVNTFLHDPKVHEVDSATAEPDLMTHHVFETTRGDKHELVRMLASGEGRRILFT RTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRVMVATDVAARGIDVG GVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETRRLLNQAGIKTKMIE VTHDSPEVLELVGDRAERVDGWSLDKSQPVGNPRKGKNRGAKNAAGDESGRGGKRKHNRN RNRDEQNVAETEFQHENAGGEFVAEGEPQRKHGDKASKKAVKKNRNRAERRAGMSNPEAE RRDYLFEHGDDRREERRKGDRRDGYGKNRYDERQDNGRDQHGKNRRNDRYGKGDKFDKRD RAGYGRNDDFGSRRHNAGRDFERSDSRDFERPRKPRRNERSHEDYGFSYDERSHDGRRQS MRNTRQGEGGKRIHRKNENRIVRDERSEGAKRHERRMIAKYGNTEGPNRRHSKKNRHNAP FRMKSGRR >gi|316916247|gb|ADCN01000016.1| GENE 20 20945 - 21157 80 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGRFEEIVKPQNKAIFTYRPMRVLPPHGIFAAPWVLPPRKASTAPWNTQMAPTREGRGHC AKGLSQDTAQ >gi|316916247|gb|ADCN01000016.1| GENE 21 21170 - 22459 654 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 22 406 5 413 447 256 36 3e-67 MSNIFQWQLHGDGKTLAPGEVVEPDERLTWVRTAGIGAQHVIAMFGATFLVPILTGFDPS TTLFFTAMSTALFLLINRNVLPSYLGSSFGFIAPITAVTTANKGIAVASFGIMVTGILLA LVGVLVHYAGSKWIDIIMPPVVNGAIVAIIGFNLAPSVWTNFQAAPDTALVTLLAVLLVA VLFKGLLGRLNILVGVIIGYVYACIRGQVDFSAIGDAAWIGFPKFHLPQADFSILPMFIP VVLVLVAENVGHVKSVAQMTGRDYDNQIGTALMADGLGTTLAGFGGGSGTTTYGENIGVM AATKVYSTAAYWCAAAFALILSLCPKFGAVINTIPAGVLGGVTTLLYGMIGMIGIRIWVE NKVNFDKPLNIMVAAITMIIAIGQFAFTVGGISFNGIAIGTIVILVAYHGLKAIGKATGT IAKDDPDIL >gi|316916247|gb|ADCN01000016.1| GENE 22 22564 - 23394 1263 276 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0828 NR:ns ## KEGG: BLJ_0828 # Name: not_defined # Def: phosphoglycerate mutase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 276 1 276 276 543 100.0 1e-153 MSMPLDLYVIRHGESEANVIVQAGEQGDNSLYTQDNVTVPDRSWRLTATGRKQADCIGRW LVSQQQLFDRYMVSPYVRTRETAATMALPKAKWEENRVLRERSWGEINTITKDEFKNNYA RNWNFKNTDPLYWRPPAGESIADVAEDRVHNILTSLSRKSDSESVVMVTHGDFMLALMLT IEDLADEEFLHRADSDDWKITNCTCLHYTRRDPETGRTSKRVRWEQTARPVLDETTGRWE VKVEPWREFKRPYLSNGDLVDVVQAVDPHLLEYYGK >gi|316916247|gb|ADCN01000016.1| GENE 23 23445 - 24026 573 193 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0827 NR:ns ## KEGG: BLJ_0827 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 193 1 193 193 365 96.0 1e-100 MRVFDFDGTIYDGESLFDLYLYSARHDPKVFRYIAPVLRYAVKYKLGRATLEQMEYGVGK MTEGYLTELSRSKRVASVEQLVDDFWDRYYARIKPWYQPESDDVILTASFDLTVGEACRR LGVRNLVASEVDVGTMKVTYLNFNTNKARRFRELYGPDAVVDEFYTDSKFDQPMIDMARH AFMVKGDTITRVK >gi|316916247|gb|ADCN01000016.1| GENE 24 23949 - 24113 120 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAGGIQVQVEQAFAIIDGSVEIEYAHTFCFYSVIPCLRLISVSRRKRKYAVNFT >gi|316916247|gb|ADCN01000016.1| GENE 25 24182 - 24736 604 184 aa, chain + ## HITS:1 COG:no KEGG:BL0913 NR:ns ## KEGG: BL0913 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 184 1 184 184 318 100.0 4e-86 MATSEIEQWWIDKFQENLGPIRKVAGWTTQQLADELGVARQTVSNLETGKSPMTKLQYLA LRTVFSAEIARREDRDLARIIKTLVDDPIEQRIRERRAQEQDGEAVADNAPVNTGCGNAA DNAATEKRKPSAATLKASKTAATGKPTLSTAMQALAVITGALASGTAAGIITYLMFPDGG PNKR >gi|316916247|gb|ADCN01000016.1| GENE 26 24856 - 26019 816 387 aa, chain - ## HITS:1 COG:BH1805 KEGG:ns NR:ns ## COG: BH1805 COG4260 # Protein_GI_number: 15614368 # Func_class: S Function unknown # Function: Putative virion core protein (lumpy skin disease virus) # Organism: Bacillus halodurans # 1 318 1 314 433 141 32.0 2e-33 MAVIKAFAGALGGTFADLWRDIITAGPFTEHTVVVPGIPRGSNNDRGSNEYGSEGIITNG SRIYVPENTAAFIFSETGIENVITESGGYEYRNGEQSVLAGDGIGSFFNQVADRFTFGGQ PGRTKYVAFVNLREIRGIKFGTSAPLVYNDRFYGVDLEIRARGSMSLKVTDPVRFVRNFV PATTVSYSFDDEGPRRQILSEFVQSFIVAINSLSNEYRISQLPGKANDIAACVRGDRANA GTWNDRFGFEVSSVGIESIEFTEQSRQLVQQFASNKMNVAAYEGVSQQAGNMAAQQRIAQ GIQDNGFGDGGMLLGMNMAQAINPMTAAPVQAPAPAPAPEAAAPASHTASMSVEEQVEAM KKLKELVDIGILSQEEFDAKKHEILGL >gi|316916247|gb|ADCN01000016.1| GENE 27 26102 - 26308 140 68 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0823 NR:ns ## KEGG: BLJ_0823 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 68 11 78 78 134 98.0 1e-30 MDEPVFNKAIPGTEALAGALKDTFGAFRSGLGITEPVVSVNCEGCGAPLSGHRKEVVRCE YCDRETQL >gi|316916247|gb|ADCN01000016.1| GENE 28 26392 - 27936 1493 514 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0822 NR:ns ## KEGG: BLJ_0822 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 514 1 514 514 832 98.0 0 MTTPFDQQPQPVPPSEGTNDAPEDRANAPTVPNTVPAGQPNVASDGATTTPMTPATASQR PAGAPFDRVYAVSPQQLFQVIHDQLTTGATFTLDNENTQTGAFSFHSYDGVNCTLTVVPQ GAAGAAIRLEATGNESAKRVDEFLAALDKRIGVAPAPATHGAGAATGFAGAAAPAVLAPN AQGVKKTSKLAVFAIIWGVLFVLAQFVDVSGRSWGGLLFATVIPALLSGFAVYVTRTSGK VQGRVLAWVAVGITVVGLVIGGVFVIRDGAKAKADRAELEASLATKCEAYSWPESDIAAL LPQPKSTKGEIKSESSDYFSIEVCDTDAKQYADYVKSVQDNGFTVDYSKSADIFNAKNAD GYSVSVSRDTDDETIMSITIQVPEKKEDTSTDGDAAKQDDKSTDTGTDSSDANKQSDQSS DQKAQQNTNDSADFKSTMDSYEAFIDEYVAFMNKYQKSDNVVSMATDYASMMKRYSEFSQ KVDAIDENSLSSEDSAYYTEVMTRCAQKLASVGQ >gi|316916247|gb|ADCN01000016.1| GENE 29 27933 - 28043 153 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSERYRLAMAVGLTVTVAGLASSVLVMLLLKERRAS >gi|316916247|gb|ADCN01000016.1| GENE 30 28370 - 28810 479 146 aa, chain + ## HITS:1 COG:no KEGG:BL0917 NR:ns ## KEGG: BL0917 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 146 78 223 223 282 100.0 3e-75 MADIPEEHLTEELLDRLLASASIEQYLDEGLVSARTLTDYLFDRMEAHDLRRADVVRASG LNATVVYDIFSGKSRPGRDHAIMLAFGLKCTLRETQRLLRLAGVSELWCKQRRDAIIIWC IRNGFDRIATDDELYRMGEATLLPAD >gi|316916247|gb|ADCN01000016.1| GENE 31 28872 - 30572 1239 566 aa, chain + ## HITS:1 COG:lin0627 KEGG:ns NR:ns ## COG: lin0627 COG0515 # Protein_GI_number: 16799702 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Listeria innocua # 41 257 38 242 383 131 34.0 3e-30 MDDKQAMHAMSIDDAYHVERTLARGPSGVTELVSIDGNGPFVRKKIPSPLAQRNVWAALS ACQSNRLPRVEATYELPDRFVIVYDYVPGSTLAQIAEENGRLAPNVAVQLIDQICEAVQE LHQHGVIHRDITPANVIVAQDGAHLIDFGIARIRSEASNRSRDTTALGTYGFASPEQYGF AKTDARSDVFSLGRLLGFMLTGVYPDASDYEQRLADDAAVPARLRAVIGYACAFEPSKRP QSVQEFRQALFSQSNPPIPNASSANPPSTRTTNGSASASRLFRRLHLSKRAIVLWSIAGA ALIIAAIAGGIVLAGQLGIIGSATSPDSSTQSSSQSTDKADGGHSSNGSGTDNANGTGGV GGTDGADGDNQDTVTDNPLKIVESGWSADQQGYVHYAFALRNTSKTQQVQYPQITITGRA KDGSIVFSQTQALNMAFPNQTVYDAGQAGEGTAPATVDFVVLSPDTYNVTEAQGTATFPI SGTSKIDNRDGGTTFNGEVRAVADGFKPSDGQQIKISLVLRNAQNAIIYGDIAFVDWPGN GRSTPFSITVYDLPKYVSYDLYAQIW >gi|316916247|gb|ADCN01000016.1| GENE 32 30610 - 32100 1569 496 aa, chain - ## HITS:1 COG:RSp0310 KEGG:ns NR:ns ## COG: RSp0310 COG0477 # Protein_GI_number: 17548531 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 28 465 20 415 450 112 25.0 1e-24 MSSSSTTTGPTVRETPEVSGDDNANARAAVHSANKPGAAYAAAVANGESERAWIRRVVLL LTGQAFSLLGSNIVQYAIWWWIVLQTKTGSAMLLATLFGVVPQAIVSICGGSWADRHSRK LLIMLPDMVIAVVTVVLSLSFAMGWVSLTMIFVVLFIRSAGGGVQTPAVQSFIPDVVPSG KLLRVNSIYGVINSANMIVAPAVAAVLINTVPLWSILLVDVTTAIIGVGFVALIKAPKKS AEHVARRMAEAENSGQPTLEPMSDANADRSLIASVRRVFADLKDGFSYTWHRANLRNVVL GDTLVCFVAVAPMNLTLLLMTREYEGIDLNLGFINLTTASDKLAANELGWSIGMLLGGAL MSTIGAKLIRNNMRVVAFGIALVGVSVVGLGVVHNLLAYLLIDVVNGLASAICMGPMRTI IQTEADEKMVGRVFGLDTTLSTLGMPLGMLIFAPLADVIPISLVFIIGGVLTLPIGIYLF GQARRNVSAQVTRTAA >gi|316916247|gb|ADCN01000016.1| GENE 33 32413 - 34464 1857 683 aa, chain - ## HITS:1 COG:BS_ycnB KEGG:ns NR:ns ## COG: BS_ycnB COG0477 # Protein_GI_number: 16077452 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 21 467 9 455 472 330 39.0 5e-90 MTSQKNAELGSATSSVKPIDPHTRFIVVGVIVVGSFIALLNQTVMSPALPALMRDFNITT GTVQWVTSVYMLVSGIMVPISGYLIDKFSTRKLFAGALATFMVGTLLCAVAPNFMLLLVG RILQSAGSGVLLPLVAVVPMLVYPPDKRGTAMGMAGIVMAAGPAIGPVVGGLVIDSFGWR PMFIGIAVVTLVILVGGTMMLKNVGELKNPKLNILSVILSTIAFGGLLYGFSSASTMGWS SPVVIISIVVGLVAFVAFVYKQVKLDEPLLRVDTLATRNFRNSAILVTLINAAVAATNVT LPIFIQNVLGQSATVTGMVMLPAAAVGIILSPVAGAAFDKFGPRGVGIGGLALMTISLGL LGTINTRTSVLFVAVFCALQASGQAIANMPINTWGVNALPNDMIAHGNAIANTGRQIAAA IATSLLVTAETSMTASHMSQGVKSATASGIAFSYLLCAAISLVALIICIFTVTSRAKEKA ARNAKASEAQASAEVAAETTEGQPAEHHYAGAYVAPAASLFKQAQEQSIGGIMDDQPYSC LDSDDITHVVREFIRLNVSSLPVVNGDGRLVGFVSDGDVMKSIATYESRTVSTGTGSTMV VFDDETVASKVQALSGKKVMDIATRKVVAATPDQHVGEVARILAKKQFKKLPVVDADGRL VGVIRRKSVMEHAFDALFPKDDR >gi|316916247|gb|ADCN01000016.1| GENE 34 34510 - 34791 141 93 aa, chain + ## HITS:1 COG:no KEGG:BL0921 NR:ns ## KEGG: BL0921 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 93 7 99 99 167 98.0 8e-41 MLVSRREDTDESGRKGKAAIRSAFIYGKRFAALRKLMAMVSDSCDVDCGWAIGTSRHKAC PRYTSIENRAIRGLANRTLPTNDPRQARAMNIA >gi|316916247|gb|ADCN01000016.1| GENE 35 35068 - 35433 565 121 aa, chain + ## HITS:1 COG:Cgl0825 KEGG:ns NR:ns ## COG: Cgl0825 COG3304 # Protein_GI_number: 19552075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Corynebacterium glutamicum # 1 119 1 121 136 89 42.0 2e-18 MRVLGNILWIILGGLAIAIGWALVGLILCISIIGIPFGIQAFKMAGLTLTPFGKTVQYGG GVGSALANILWVVLVGCWMALGYLGAGVLNCITIIGIPFGIQSFKMAKLALWPFGAQIYS L >gi|316916247|gb|ADCN01000016.1| GENE 36 35523 - 37031 1156 502 aa, chain - ## HITS:1 COG:no KEGG:nfa6900 NR:ns ## KEGG: nfa6900 # Name: not_defined # Def: hypothetical protein # Organism: N.farcinica # Pathway: not_defined # 24 502 1 466 467 189 29.0 3e-46 MTDKNTADKHAIDNNVAQGIAAYIDYLNQLRVSTLMDTLRQILNNETGQLKDLAERQANA LRNLDLANQNVMNIVNSGRGGENGMHGFIAEFAQTGIANARRAFEGLEKSTITLNDNGPA DLLINGKPVQVKFYANLMNELKTSAEYRSMDMMFSKDHMDIFRAVMHGDKEVFLNGQPLT SNQVQKIKQLIEEESNIRGLSWDKWMQSSVLKYDQVQREAIDRTFTEETDNIKRQTSEQK SEISNKANTDKAAAYHKAQPNLGEANKAAGVGAAIQGGLNFGIFVYQKHEEGKEIWQFTA EDWKEGGVKTAEGAFKGGFSGYAIYGLTNVCHLSAPSAGAIASGTFGLIDAVMKFRSGEI DDDGFLSLVTINALDATGAAVGAAIGQTLIPVPVVGALIGSIVASNVLGLGKNILSARER AIIAEYQRKADLFVANLDVQYAQILETLLDKYRKLGELQTYAFNLDLNIQLRFAASVDLA RFIGVSETEILHNEAEIDDFFL >gi|316916247|gb|ADCN01000016.1| GENE 37 37024 - 38193 718 389 aa, chain - ## HITS:1 COG:no KEGG:LAF_0685 NR:ns ## KEGG: LAF_0685 # Name: not_defined # Def: hypothetical protein # Organism: L.fermentum # Pathway: not_defined # 120 387 23 281 374 100 38.0 7e-20 MGNMFDNLGKGLNDFTKQAGKIAGNIGDTAGKITKDVAKGAGKIVNDAGKLAGDAGKMTA AVAGSVAQSAAVASGEVSKAADSMAKGTVSIAKNVKDSADKVDLFNSKLRAKAVEDYNNA VERYENVADDLAKSTQALYDLRKIAIVHVKYVEQHINQLANTPKEFAVELHKINTEVTTF ENKEDEIKEAEKQAKAAEGGSGAGATLSALGIAVATMGPTAAMGVATTFGVASTGTAISA LSGAAANSAALAWLGGGALAAGGGGMSAGTAFLGLAGPVGWTIAGVAGAAAIGSGIYANH KNKETADKLLLERQNVEVLIRKFNAKNAEVAALTEATQTQIDGVQRANAAVTGADYSQFS HEEKMQAGLLVNMTLTLAQMINKELELDD >gi|316916247|gb|ADCN01000016.1| GENE 38 38431 - 38601 134 56 aa, chain + ## HITS:1 COG:no KEGG:BLD_0662 NR:ns ## KEGG: BLD_0662 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 56 1 56 56 93 98.0 2e-18 MIQRIAFSSNGVNEHAKRQQMNLPAMLECAFKQGLRTAQFQPITGNKRSLLAAIQI >gi|316916247|gb|ADCN01000016.1| GENE 39 38723 - 39601 643 292 aa, chain + ## HITS:1 COG:no KEGG:BLD_0663 NR:ns ## KEGG: BLD_0663 # Name: not_defined # Def: hypothetical phosphoesterase/phosphohydrolase # Organism: B.longum_DJO10A # Pathway: not_defined # 20 292 1 273 273 541 100.0 1e-152 MHRSKTHCIPSHIQKEQQIMKYFTTDTHFGHPLVSVLRGFTTFDPGHTQYDALLSSQGRK AAEDWAKGVVLDDSRLNFRKAADTDAHDEAIVANINRIVGEDDELWILGDIGYRTSVRHL KSCLRQLRCRHLHAVIGNHDDWWLDDAPARDLFESIEPNSTAELTGLGIGRPQATETVNL SHFPYREDLAYGWPDDAVRFRDQALPFDGHRLLYGHTHQLSPEGARHEALNVGLDAWNLQ PVSETQIADWFHAHATDSTHVSPLDMPDSPGPAPIDSAAQQEPGGSVSAAES >gi|316916247|gb|ADCN01000016.1| GENE 40 39685 - 41127 723 480 aa, chain + ## HITS:1 COG:FN1603_3 KEGG:ns NR:ns ## COG: FN1603_3 COG5324 # Protein_GI_number: 19704924 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 164 425 6 270 273 79 28.0 2e-14 MAKLIILRGLPASGKSTWARSWCEDPANTWPHCVISLDDIRLMIAGSAQVRNRLQSEHGK RFNDMVVAMGRHMIADALDAGWDVVADAQHANPRYAAELALLAQRHGALWETRDFDVPLD ELLRRNAARDTADRVPEDYIRSSWKHFHTAMFRPLEPGDPNGNLLERMRADPYVRVIPVR GETDVYACNFTAEAFREHRWTDRIINARGLFIGGNGQVVQRGFEKFFAVDETEETSFAQV VNHAQEHPESLPVRVERKENGFLGLVGAAGTPGLFRFWSKSGQTDYSALIERPFPSDSAV RAELWRMLHEWNVTAAFEVIDRESDRHIVGYESSGLRLLHLIRNAESFSIDAAHEETFTL AGGFVRPETVAICHSPEEVAQAIGDAKASPREGVVLYFADGWMVKVKSDRYKLVKAMRPL MQRVLLRGRSFNKSGDIADLARRIIDYAHEHHIDLAYERQAFGERDIDMTKVNDIVDHVR >gi|316916247|gb|ADCN01000016.1| GENE 41 41169 - 41471 108 100 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTVTPLESFFVSSRPNMMSFTASLSNRFGAWQNRVGWLALGQHPLLFCNGISTMFVMNSC SRKEMPAYGASCSKHRDSLSGLHENDLVLAQYMLSRHMPS >gi|316916247|gb|ADCN01000016.1| GENE 42 41320 - 41520 286 66 aa, chain + ## HITS:1 COG:no KEGG:BL0925 NR:ns ## KEGG: BL0925 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 66 43 108 108 133 100.0 2e-30 MPLQNRRGCCPSANHPTRFCQAPNRFDKDAVKDIMFGRDDTKKDSNGVTVIPYSKLDERA PVELAA >gi|316916247|gb|ADCN01000016.1| GENE 43 42002 - 43096 1983 364 aa, chain - ## HITS:1 COG:Cgl1003 KEGG:ns NR:ns ## COG: Cgl1003 COG0012 # Protein_GI_number: 19552253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Corynebacterium glutamicum # 1 362 1 361 361 422 65.0 1e-118 MSLTIGIVGLPNVGKSTMFNALTRNNVLAENYPFATIEPNTGIVPLPDDRLPVLAKLVNT EKIVPATVTFVDIAGIVKGASEGEGLGNKFLANIREADAICEVVRAFEDDDIVHVNGKVD PADDIDTINTELILADLQTIENALPKLEKDLRGKKIEPAYMDAVKQAKTILEAGETLDKA AREGRFDKDSVYDLHLMTAKPFIYVFNVDDNELANKDLQAKLAASVAPAPAVFLNAQFEA DLTELDEADAREMLADAGLSESGLDQLARVGFDILGLQTFLTAGVKEVRAWQIHKGWTAP QAAGVIHTDFEKGFIKADIVSYDDFVAADGSMAKIKEEGKLRQEGRDYVMADGDIVEFKF NVSK >gi|316916247|gb|ADCN01000016.1| GENE 44 43114 - 43914 879 266 aa, chain - ## HITS:1 COG:TP0797 KEGG:ns NR:ns ## COG: TP0797 COG0345 # Protein_GI_number: 15639784 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Treponema pallidum # 6 263 3 258 263 188 42.0 8e-48 MSNPTIGFIGYGNMAQAIAEGLVAAGAVDGADIVACAAHYDKLEKTTMKVGAKPLHNAAE VVAASDMVVIAIKPYQIESVIKPVIGAIADEDKFVVSIAAGWDLDKYRDLFGADFNAAHI QCTIPNTPMAVGKGVLVTEADNTLTDTQAEVFERLFSSISLIERVDSAHMGIGMCIAGCA PAFTDMYIEALGDAGVKYGLQRATAYRLAAKMVEGVGALYLKNETHPGVMKDAVCSPGGT TIKGVTSLEESAFRGAVIKAVDAIEA >gi|316916247|gb|ADCN01000016.1| GENE 45 43989 - 45332 1556 447 aa, chain - ## HITS:1 COG:Cgl0575 KEGG:ns NR:ns ## COG: Cgl0575 COG0596 # Protein_GI_number: 19551825 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Corynebacterium glutamicum # 35 440 39 424 427 187 33.0 2e-47 MTLLSEYYVPGLHIEDRSIKVPLDWTGHEPGHGFDGESISLFYRVVTAPEHVHDDLPLLV FLQGGPGGSGPRPLGPSSDGWIEEAIKHFRVVLPDQRGTGRSSRVDTHVIEGMDGDGKAG AAFLKRFLADSIVRDFEHLRRTEFGGARWVTLGQSYGGFLTLTYLSLFPQGVIASFTTGG IPHVPADATDVYRHTFPRMAAKTKQFYERYPIDIERAAAVADILQSRKVTLPNGDPLTVE RFQCLGSDFGMKPSFERVHWILDQAFLDGDGSASTSAELSDEFLSSVMDATSSRPLYWPL QEFIYANGELEAPICWAAQRVRGEHPEFAGDIRPLNFTGEAMFPWMFEQERALRPFKPAM DVLMEDTHFGTIYDADQLARNEVPLQAAVYFDDMYVDSGLQFDTLSRVGRSHYWTTNEFE HDGVHGSVVFKHLFDEALNRGDLEELF >gi|316916247|gb|ADCN01000016.1| GENE 46 45389 - 45499 81 36 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|212716973|ref|ZP_03325101.1| ## NR: gi|212716973|ref|ZP_03325101.1| hypothetical protein BIFCAT_01919 [Bifidobacterium catenulatum DSM 16992] # 1 36 10 45 45 67 97.0 2e-10 MASIPPTCGDNLTSQKRLYLTAISFLRMMASQHIWR >gi|316916247|gb|ADCN01000016.1| GENE 47 45510 - 48119 984 869 aa, chain + ## HITS:1 COG:all4636 KEGG:ns NR:ns ## COG: all4636 COG4585 # Protein_GI_number: 17232128 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Nostoc sp. PCC 7120 # 192 439 159 396 401 90 28.0 1e-17 MSNFKQRLLSWMHGHVFAGDLIITLVIGVLLFGVTSGITYNPGLLFDLKPSTQMTWEAAM LIPLLIRRWWPQTGALLCVALTLAHLIFGPCLLGTDILALFMLYSVIVYGNPKNTKAFII LALTIGLLASALAAWTITNGPLLTGGKVHTWSSWNDSNPNGVMVTEDTLGSIYTGTSISE VANMVAQYMLVLTPIFEVCIISTVIVAFWQRARLATVRMMRERNEAIAARDQDERDIAAL AERARIARDMHDVVAHTLSIIIVQSDGGRYAGTHDPAVARNTMETIRHESERALHDMQRL LGVFGGSPHADYNDIGNLVEQARNVSPDIRIRWNITGTASPEQLGEQASIASYHVVQEAL TNIRKYAGPHVDVHIKESWNNGLLTLTVTDNGRGAAANIDGHTPGYGLLGMKERIESAGG SLQAGPQLGGGFEVMATLPYGGKEPATDETGEQYASEQSESCNTTAISSKAKLSDEAIAS HTAVNISARIPDQPSEQTQETNQPTGRDHRSNALQHLRITAPNLHDLLTSLKLKSVELAN TSNSRGLNWVERVSAWTQHHYVLMDSVDAVVLVMLLNRMSITFFFDSSRDAQLSHAIAAC CLLALALRRRFPETCALIVFVLSVVQLVFLESIEVGHIVASLCALYSAVLYGREHAWRWA GLAAATCSVLMGLKIAAYQHGYTTLFGAIAAFAGLTKPVSVTSSNTAAFFTGVMDTVAVL MLCAGIMAWARWARSSDSNALVLQAREEALVAEQEKQRILAANMERDRISASIQAEVTAT LNSVISQAVDGIRMLDSAEAQGKEPTADEISTAFKAIGEQGRAALKRMRELLGVLRETGF SDDAHAGSASELQLRPAAPLEEQLQRASR >gi|316916247|gb|ADCN01000016.1| GENE 48 48196 - 48942 584 248 aa, chain + ## HITS:1 COG:BS_yxjL KEGG:ns NR:ns ## COG: BS_yxjL COG2197 # Protein_GI_number: 16080942 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Bacillus subtilis # 4 248 3 217 218 179 45.0 4e-45 MSEEQKIRVVIADDQELVRAGFAMVIGSQPDMTVAAQARDGAEAVALAETLHPDVVLMDV RMPGMDGIEATRQISSLQHRFAADGTQSEVTHTKVIILTTFDLDEYVMAAITAGASGFLL KDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGRPENSATTSATDSTY TDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVV FAYENHLV >gi|316916247|gb|ADCN01000016.1| GENE 49 49034 - 51676 3060 880 aa, chain - ## HITS:1 COG:Cgl2500 KEGG:ns NR:ns ## COG: Cgl2500 COG0577 # Protein_GI_number: 19553750 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Corynebacterium glutamicum # 1 879 7 853 853 210 24.0 1e-53 MWSITLKLMRKTKRMLIPAGIAIMIGTAFIASTFLFGNAMNDSLTRQMTAMFGNANYAVT VNSSDLSDEELNEAYSSTVGDFHLDQIAGIEGVDGVRASVETGVSVSRGDSAISGEIIST AAQKNMLPVNITEGNQPKDSNEVALPEDMAKQLNVGIGDTVRLTSQYAVGTDGKAKADNV RVVGLTSDPNGAYSYYGGAIVGSNNLLAAMQGVDDFNATGTTMVYLDLALDGNSVSAKTI NGVKALLPKHFDLMSRQQISDESIKSLSGNQTNIAATFLMCFGVLAMFVAALVIANTFQV LVAQRRRTLALLRTIGAKKGQLYGSVLFEAVVLGFVASVLGVVLGSLLMWGMCVSDIMQA GMRFNFSWQAAVVPILFGIVVTVLASMGSARSATAVTPLEALRPIELTDNRRSSLTRAII GILMVVVGIAMAVFSIWQVQATNGGEEATRDQFTMILLMAIAGAALVFLGMVVTAVFWMP TLMKGVGALASLTGPSATVAHANIQKNPRRIAATGAALLIGVTLVSTIATGAASAKETMN GALATRYSVDIVAMGDDISQQMVKDVSDINGVSDTLYAPAVSVTLEKADGTQPTSALLVG VKNIDQVKQVMRANLGNASIDSDSVLMPTYNAQTGKELQFANGTADFSTEWNQDGDATRS LTLQANQADYRRVSAQYGAVGFVDESHFTNGDLDTATHVLLVKADTDKSGVSVDGIYNDM QAALEKSADATVTGPIAERIVWANMIDSMMMLLVGLIAVAVLIALVGVANTLSLSVIERT RESATLRAIGMTRGQLRRSLAVEALLISLVSGIAGVLLGTLFGWLGAYVVFSMYGKVVFP FEWGINGIVLAVAAVAALLASVFPARRAVSTPPVEALAEA >gi|316916247|gb|ADCN01000016.1| GENE 50 51718 - 52509 291 263 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 14 230 2 218 245 116 35 4e-25 MNVQNPAASRGIAIQAVDLVKNYGTGSNMVHALRGVNVSFERGKFTAIMGPSGSGKSTLM HTLAGLDSATSGHILFGGADLTRMNDKQLTLLRRHKIGFIFQSFNLLPMFTAEQNILMPL TLAGDKPDHAWFDLLVDTLGLKQRLNHRPNELSGGQQQRVAIARALITKPKLVFADEPTG NLDSVSSAEVLGFLKRSVNELGQTIVMVTHDAVAASYADRALVFADGQIVADVNKPTADQ MSELLMKEREAATMNVASARHSR >gi|316916247|gb|ADCN01000016.1| GENE 51 52858 - 54174 1934 438 aa, chain - ## HITS:1 COG:L75975 KEGG:ns NR:ns ## COG: L75975 COG2873 # Protein_GI_number: 15672055 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Lactococcus lactis # 5 431 3 426 426 492 59.0 1e-139 MAENNKKYRFETLQLHVGQEQADPATDSRAVPIYATTSYVFHNFDHAEARFGLADPGNIY GRLTNTTQGVFEDRIAALEGGTAGLAVASGAAAVEYAVRNITQSGDHIVAAKNIYGGTFN LLRHTLPRDGITTTFVSAENPQEFEDAIQENTKLVYFETFGNPNADLPDFEAISEIAHKH HLPVIVDNTFATPYLFRPLEHGADVVVESATKFIGGHGTTLGGVIVEGGKFNWAEVPGKF PTLTEPDPSYHGLNFYEALGGAAFVTRVRAILLRDTGATLSPFAAFLLLQGTETLSLRVE RHVQNALKVVEYLQTVPEVESVSHPSIPGRPDHDLYEKYFPNGAGSIFTFDIKGGKDAAR VFIDNLHLFSLLANVADAKSLVIHPASTTHSQETLEELEDQGIHQGTIRLSIGTENIEDI LDDLKGGFEALRASGLAK >gi|316916247|gb|ADCN01000016.1| GENE 52 54650 - 55522 1014 290 aa, chain + ## HITS:1 COG:CAC1622 KEGG:ns NR:ns ## COG: CAC1622 COG2240 # Protein_GI_number: 15894900 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Clostridium acetobutylicum # 14 282 5 275 290 187 36.0 3e-47 MTDVTLYDRDPNYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYA VFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVM GDAGEMYPTYTPELCEAMGALADSADVLMPNLTEASILTKRDYPGQDIDEATVNELLGAL LELGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGA VMAGRGLAESAEIAGEFVRHAMVSTRNQPHFEDRGVSFELNLGELTDLVK >gi|316916247|gb|ADCN01000016.1| GENE 53 55759 - 56262 224 167 aa, chain + ## HITS:1 COG:MT2966 KEGG:ns NR:ns ## COG: MT2966 COG0792 # Protein_GI_number: 15842441 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Mycobacterium tuberculosis CDC1551 # 47 156 18 124 141 80 43.0 2e-15 MNALPPTQPMTKSGINAGLAFHQPMLASPDPQAMLPSERIAATMGDRNLTPKQFGALGEQ YAAAWLEEHGWTTLSRNWHTRYGELDIVMLNPEYTVVFVEVKSRRSMHYGYPQEAITPAK QHNLRKAACDWLLDRRNRVPHSAVRFDVVTIVLRVGRPLVHHIENAF >gi|316916247|gb|ADCN01000016.1| GENE 54 56321 - 57856 741 511 aa, chain + ## HITS:1 COG:Rv2897c KEGG:ns NR:ns ## COG: Rv2897c COG0606 # Protein_GI_number: 15610034 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Mycobacterium tuberculosis H37Rv # 1 507 1 497 503 401 45.0 1e-111 MAIGSTLSVGLIGLKAFIVQVQAFISPGLPYFSIIGLPDASLSEARERVKSACQATGFGW PQTRVTVNMSPAAMPKRGSSHDLAIAASVLCAAGAIGHDCLEDTIVLGEVNLDGSVLPIH GLLPIMLHAEERGVRKMIVPHRNLDEASMVDGLDVVGVRHVGELIELMGGDATYTIPDTP VTDETTTDQSPTSHPNDCGDMNEVLGQEHAKWALQVAAAGGHNLIMTGPPGSGKTMLASR MPGIMCPLNEAEQLEVASIRSLCGILPQYGITDMPPFEAPHHTASTAALVGGGSGIAVPG AITRAHRGILFLDEAPEFSARALQTLREPLESGYVALSRSKGSTYYPASFQLIMAANPCP CGYYYGTGERCACREKDRIRYFSRLSGPILDRVDIQMAVPPVSRIAAQSEPIGESSAGIQ ARVIRARQVAKDRFRQYGWVCNAQASGKWLHANTSLKAMELVNRALSNHQLTLRGADRAM RLSWTLADLAGRVSPTEQDVHQGIEMRTRMT >gi|316916247|gb|ADCN01000016.1| GENE 55 57853 - 59553 888 566 aa, chain + ## HITS:1 COG:Cgl1982 KEGG:ns NR:ns ## COG: Cgl1982 COG0758 # Protein_GI_number: 19553232 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Corynebacterium glutamicum # 163 371 108 305 394 129 38.0 1e-29 MSNATDIRQSGGTAGSVDHTDTSLAVSRTIPVPPTDTLYRAALTFCLDGADVMMYATLKG AENAESLWHALAQSHPSQPSEICGPALSRIDRMFVDGLTRWGRKASANAMRSFRNALACW HNRMMDLPSQDIIQLADWFTMDGTQWIIGPGHPCWPSQLADLSIRSDWAPPLCLWIKGDP RALTSCAKPVGIVGSRDVTEYGRYVAHTVAEQAAVAGHLVVSGGAMGTDAAAHWGALNAL HGRMPANVGKTVAVFAGGLNHIGPMRNRTLFERIEAQGGALISELCPGTIPEARRFLLRN RIIAAMSSTLIVTQARLRSGALNTAGWACELLREVYAVPGDINQPCNAGCNKMIGDHRAM ILCAATSTEDICHERHKPVMAAYPGISKSTGQDSSENEEAMEVPATTPLSPASSESSVSQ ESSQDSGHSKRSKTKHTQPTRTQSKDGPASATADSGNDKSKGEELPSSHQMPDLRVKPKP DPEKEAQQRIIIAKLPEMERTLVALIRECRKRHLIVTPDALLRVARETVPDEIPNIGTIL ELLGALELKGVIERDAGILKLSSRVG >gi|316916247|gb|ADCN01000016.1| GENE 56 59610 - 60611 1215 333 aa, chain + ## HITS:1 COG:MT3419 KEGG:ns NR:ns ## COG: MT3419 COG1053 # Protein_GI_number: 15842910 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Mycobacterium tuberculosis CDC1551 # 39 316 24 303 590 312 54.0 6e-85 MSPKRLEDMYDAVIVGAGAAGLSAALGLLRSPEITELKEQGVDPKILVVSKLQPLRSHTG SAEGGIAASLGNVESDDWHWHYYDTIKGGDWLVDQDAAKLLAEYAPQTVINLERQGVAFS RTEDGHIAQRRFGGHTREFGGAPVKRAAYAADRIGHQILHALWQQCVAAGVEFAEEWYVT DLVLADDGKQAAGIVAFDTHSGKIQAIHARNVLLATGGAGRLFHTTSNSWDLTGDGMALT LAAGLQLEDIEFVQFHPTGLAHTGILLSEAARAEGGILRNADGEPFMERYAPEHKDLAAR DVVSRSIMAEIDAGRGVADRRTRMVRRTASGWI >gi|316916247|gb|ADCN01000016.1| GENE 57 60608 - 61474 893 288 aa, chain + ## HITS:1 COG:aq_594 KEGG:ns NR:ns ## COG: aq_594 COG1053 # Protein_GI_number: 15606038 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Aquifex aeolicus # 7 288 315 571 571 160 33.0 2e-39 MTGIDPERMKEVLPQVVETIEQYANLDPAKDLVPIKPTAHYTMGGIPITTDGEVYRWADG AVQVVDGLFAAGECSCVSVHGANRLGGNSLLDACLFGTRAGQTMAARIAENPVDSPMADD SADDMLTDAADQAADSRKAELDELLAGPIDDSDDGVPTANPYQLMAQLGSVMEQALAVRC TAQTIDTALTQINGDITPVADTLRAHDKTAAFNQEVTAIWEVRHLIELAEVMLHASESRQ ESRGSMQRLDFPERDDEHFLAHSMVADDGSVSFKPVHITDYPPKKREY >gi|316916247|gb|ADCN01000016.1| GENE 58 61570 - 62535 1162 321 aa, chain + ## HITS:1 COG:MT3420 KEGG:ns NR:ns ## COG: MT3420 COG0479 # Protein_GI_number: 15842911 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Mycobacterium tuberculosis CDC1551 # 9 314 24 255 263 147 30.0 3e-35 MAEASNTTVTLQVHRFTPRPERAERARGGSPFAKKGSPFGGGSDSAARRRPRGKQWVQEY TIPARPSDTVLDCLLTIKRTVDPTLAFRYSCGHGMCGSDAVAINGTPTLLCTATIRDWAK QPGAMPEVDDEGFRHTGTEAEESDDSAENVANAAAAQNSAANGSLGVIELASLPGFPPQR DLIADIDPMLNQIRKLTPYLQADGVLATTAEGKVDVFEYLQNPEQLAKYELLSNCIACGV CEGACPVYAGGDAFIGPAALIWASRFVNDSRDTKAMERMDAIDTADGVAACQSVRACSRH CPRGIDVGEEMWQIVAKVRER >gi|316916247|gb|ADCN01000016.1| GENE 59 62629 - 63294 1083 221 aa, chain + ## HITS:1 COG:MT1258 KEGG:ns NR:ns ## COG: MT1258 COG4122 # Protein_GI_number: 15840664 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 24 220 23 214 215 73 32.0 4e-13 MDRTQYTNLAKAWEFTEEHARERESDALTDTRTAADESGQLQGSAAQARLLGMLVRITGA ASVIAVGTGSLVETLQLAHALDNKGLLTAVDSTAQGIALIRKAFAELQDETDTTLRAVNA PASVFLPRLNANDYDLIVVAGDAENYAATFAQASRLLRVHGVIVFTDVLALEDGQGGVIN PADRSDKAIAMRELLTTVEDDEGFESTLTPDGTGLLIAYKK >gi|316916247|gb|ADCN01000016.1| GENE 60 63340 - 64281 1082 313 aa, chain - ## HITS:1 COG:Cgl1086 KEGG:ns NR:ns ## COG: Cgl1086 COG1611 # Protein_GI_number: 19552336 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Corynebacterium glutamicum # 80 310 17 245 256 258 54.0 7e-69 MAKKQKKSKKNDGKKAAEAKNLAEAASKSAVVDDMEPLEATAANDAAALEAETATEAVAT PVNPVDLEDASPLGDTYHRGPVILRGQMIPSDNTTANLLKSDQDTDWLHMDPWRVLRIQS EFVDGFGALAELGPAVSIFGSARTQRTESIYKAARRMGSQIAKRNIAVITGGGPGIMEAA NRGAALAGGKSVGLGIELPHEQGLNQWVNLGMSFRYFFVRKTMFIKYSSGVIVCPGGFGT LDEMFELLTLVQTHKVANIPVVLYGKEYWQGLFDWLNGPVAEHGMISTIDPKLVTVTDDA DEAVDVAVSAIVR >gi|316916247|gb|ADCN01000016.1| GENE 61 64453 - 65871 1669 472 aa, chain - ## HITS:1 COG:CC0450 KEGG:ns NR:ns ## COG: CC0450 COG3004 # Protein_GI_number: 16124705 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Caulobacter vibrioides # 26 418 22 388 413 197 34.0 3e-50 MATTAGAKKGLWSTIRRIAASDRISGLIMLGFALTGLVLANLPATAHAFETVAETHLFIP YTNLDLPIGHWAQDGLLTIFFLTVGLELKQELTTGSLANPKAAAVPMLCAVGGMIAPPIL FLAVTALFSQLGPGEPGTLILTTTGSSIPFSEMSHGWAVPTATDIAFSLAVLALFAKALP GSIRAFLMTLATVDDLLAIILIAVFFSSINAWYWFIGIVMCAAIWAYLVRLKKVPWIAVG IVGILAWIMMFEAGVHPTLAGVLVGLLTPSREMHGELSPRAERYANKLQPFSALLALPIF ALFATGVHFESMSPLLLASPLVIALIVALVVGKPLGIITTAWLSTHVGGLKMAKGLRVRD MIPAAVACGIGFTVSFLIASLAYKNAELSAEARFGVLVASLIAAAISGVLLSRQSKRFEK TAAAAAADAEDDESIDGDGIGQPSHTTEPTTPTEHPGTLADGTASVEIDFRH >gi|316916247|gb|ADCN01000016.1| GENE 62 66352 - 67770 258 472 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 208 447 267 450 466 103 31 2e-21 MGRVVSYNEDVPRCTFCGKTEHQVRKLVAGPNASICDECIALCVDIISEERVKDAEVNSL SLPKPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTGK QAKQSVPTQTRAARRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDA TTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSG EGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGR RETGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILT QPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAIKQGTGARGLRSIIERTLQDTMFQL PSLDDVRQVIVDKASVEGSSTPKLLREAVDVPQGRLKVAQSVLLDRVRTHEA >gi|316916247|gb|ADCN01000016.1| GENE 63 67892 - 68593 1080 233 aa, chain - ## HITS:1 COG:MT2535 KEGG:ns NR:ns ## COG: MT2535 COG0740 # Protein_GI_number: 15841984 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Mycobacterium tuberculosis CDC1551 # 28 233 2 208 214 239 61.0 3e-63 MASEEAKFAARADRLAGRQGVAGFMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYS RLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQ YIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAK EMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAKEYGIVDEVLEHRQ >gi|316916247|gb|ADCN01000016.1| GENE 64 68599 - 69222 1066 207 aa, chain - ## HITS:1 COG:Cgl2360 KEGG:ns NR:ns ## COG: Cgl2360 COG0740 # Protein_GI_number: 19553610 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Corynebacterium glutamicum # 24 195 18 189 197 226 60.0 3e-59 MSNTFATLPVMAGDDVPAGPVDPIFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDP KKDIWLYINSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTS HARVLMHQPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFT AQEALDYGFVDKLVTTPDTIGNNQQGE >gi|316916247|gb|ADCN01000016.1| GENE 65 69328 - 69708 408 126 aa, chain - ## HITS:1 COG:no KEGG:Blon_1709 NR:ns ## KEGG: Blon_1709 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 126 1 126 126 185 99.0 4e-46 MSENTEIRSALELLAAEPLTEQIDYYRKPFMVLWAAIQEAASDVAEDYDLPADMAQLWVA EQMRQVADSLVDRLAEKAVAHGASKSNVARAAGASPANAARRFPRLGDDAASQTRLLIDD VLDTLE >gi|316916247|gb|ADCN01000016.1| GENE 66 69824 - 71290 1295 488 aa, chain - ## HITS:1 COG:NMB0982 KEGG:ns NR:ns ## COG: NMB0982 COG0038 # Protein_GI_number: 15676874 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Neisseria meningitidis MC58 # 61 296 31 263 380 90 32.0 5e-18 MQPTVTIKRLGWLAAATIVLGVLIGVGAGLLTLLLYGVEHVLLGYIEGPELPGPFGVPAA RRAISVTVGLSIAGIIWYLLRHKTTAVPSVKKAVAGKRMPFWQTIAHVVLQIFIVGSGAS IGREVAPRELGAMLAQRFCDLFHIEGVDGIDRRMVVAVAAGAGLGGVYDAPLAGMFFAVE ILLVDVTIEKVAFGLGMSAIAAFVAVAIKGHCLFYDITAMQPESTPTLMLFALICGAACG VGGALFRKGSQWAEAHKPTGKAILWQMTLAGLITGLVAIVVPQVMGNGRAAAQLGFSTFI PETAGTAGAMQSASSAAASPWNLLTGGGNVSDSASGGGAGSGMASFWAMLQGGSGPSGSV MNAGFPLSQSNIWMLLGVLALTFVAKALVTLMTIRSGASGGVLQPGIALGSTLGAMLGLV WILMFPTDSVTVCALIGAASLLSASQQAPLMAMCLVMELSEAPITFFVPVGMAVATSSLI SKWLLSRK >gi|316916247|gb|ADCN01000016.1| GENE 67 71171 - 71389 143 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFNAVEQQGQQTCSHTDEHAEHNGRRSEPTKAFDSNRWLHVNLRTLCNEYALGTPLSLAT LDSSPQRGEPKK >gi|316916247|gb|ADCN01000016.1| GENE 68 71474 - 72853 2372 459 aa, chain - ## HITS:1 COG:ML1481 KEGG:ns NR:ns ## COG: ML1481 COG0544 # Protein_GI_number: 15827779 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Mycobacterium leprae # 1 448 1 462 469 256 38.0 8e-68 MKISVRNLEPTKVKLTVTVEPEELNPYLDAARKEIAKQVNVPGFRKGHVPGKIIDQRIGF AAVAGEAVNDAVPELYSKALDEKKIRPMAQPEFDVQDVPQSANDETKLKFTATVERRPDI ELPEIDGLEIAISKPEVKDEDVDKRLETLRQRFGTLVGVDRPAAKGDFANIDLTAEIDGE TVDSQEGVSYELGSNTMLDGLDEALDGLSAGEETTFEGTLEAGEHEGQKATVKVKVNSVK AEELPELNDEFASEASEFDTLDELKADIRKAAAQDAEGRQATEARDAFIAKLQEGLEIPV PKGVKANMVEEQLKGMTPDPEKATKEQKAQAEETVEKDLRDQMVLDALAEKLDVQVSQSD VFNFLASIAQQYGMDPNNFIQAIIKNGQLGSAVQEVGRSKGLLAGMRAVKFTADGEVVDL SAFLGEAAEDEESESVEAASAAAAVADELSAKDDAKDAE >gi|316916247|gb|ADCN01000016.1| GENE 69 72908 - 74209 1101 433 aa, chain - ## HITS:1 COG:MT2755 KEGG:ns NR:ns ## COG: MT2755 COG0349 # Protein_GI_number: 15842219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease D # Organism: Mycobacterium tuberculosis CDC1551 # 2 426 13 418 438 221 35.0 3e-57 MSDVRDTEPRLLKEPRGGVPDVTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDW LIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKAL FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE LETMMRRDLKAAGKDEWAAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAK SLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDK MFERYAPIQRAVKPKVWKQAIDRAIALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRRP ERYDRLQRVRRVINRIAEDTRTPAEMIIKPQILRNLCWVEDPVEVDVETFLIEQGARNWQ VKLIAPSVSGVTM >gi|316916247|gb|ADCN01000016.1| GENE 70 74206 - 74844 576 212 aa, chain - ## HITS:1 COG:no KEGG:BLD_0691 NR:ns ## KEGG: BLD_0691 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 212 1 212 212 405 100.0 1e-112 MADIYAFPTGESNDGRPVRPQGVPDEVWAAVESVSTMKRIHDVRYREIPVPSTLADYGIG VEFEAGERALGDAFSAGLGSDAESRIATGWIMMLYAHELRIDWDSNWRCVAFARLPLETA ENDSLTPGMYWDDMCDYFDGIEPDSVSGTVTVTQNTAFGSMAGSTSAGCEIRVSWTPLDG TGPDGTMDAGAQVRSWAAFIRSTIRFEEDDAS >gi|316916247|gb|ADCN01000016.1| GENE 71 74907 - 75788 1123 293 aa, chain - ## HITS:1 COG:VC1869 KEGG:ns NR:ns ## COG: VC1869 COG1180 # Protein_GI_number: 15641871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Vibrio cholerae # 53 281 4 233 246 202 41.0 9e-52 MPATPTFRTTTRHMLKESKTYASQTLMGGLSGFESPIGLDRRDRLSALKSGDIGFVHSWD INTSVDGPGTRMTVFMSGCPLRCQYCQNPDTWKMRDGKPVYLDAMIKKVDRYKDLFKATH GGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDIDLCLLDVKS GDEETYHKVTGGTLQPTIDFGQRLAKAGKKIWVRFVLVPGLTDSEENVENVAKICESFGD AVEHIDVLGFHQLGRPKWHELRIPYPLENQKGPNAATRERVTNQFKDHGFTVY >gi|316916247|gb|ADCN01000016.1| GENE 72 75898 - 78273 3890 791 aa, chain - ## HITS:1 COG:HI0180 KEGG:ns NR:ns ## COG: HI0180 COG1882 # Protein_GI_number: 16272145 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Haemophilus influenzae # 13 786 8 770 772 829 54.0 0 MTAVENAAVSQEELDAKAWAGFTEGNWQKDIDVRDFIQKNYTPYEGDETFLAPATEKTKH LWKYLDDNYLAVERKQRVYDVDTHTPADVDAFPAGYIDSPEVDNVVVGLQTDVPCKRAMM PNGGWRMVEQAIKEAGKEPDPEIKKIFTKYRKTHNDGVFGVYTKQIKVARHNKILTGLPD AYGRGRIIGDYRRVALYGVNKLIAFKKRDKDSVPYRNDFTEPEIEHWIRFREEHDEQIKA LKKLINLGNEYGLDLSRPAQTAQEAVQWTYMGYLASIKSQDGAAMSFGRNSAFLDCYIER DLQAGKITETDAQELIDNIVMKLRIVRFLRTKDYDSIFSGDPYWATWSDAGFGDDGRSMV TKTSFRLLNTLTLEHLGPGPEPNITIFWDPKLPEAYKRFCAKISIDTSAIQYESDKEIRS HWGDDAAIACCVSPMRVGKQMQFFAARVNSAKALLYAINGGRDEMTGMQVIDKGVIEPIT PEADGTLDYEKVKNNYEKALEWLSETYVMALNIIHYMHDKYAYESIEMALHDKEVYRTLG CGMSGLSIAADSLAAVKYAKVYPIYNKDAKTLEGHEYEYVEGADDDLIVGYRTEGEFPVY GNDDDRADDIAKWVVSTVMGQVKRLPVYRGAVPTQSILTITSNVEYGKNTGSFPSGHAKG TPYAPGANPENGMDSHGMLPSMFSVGKIDYNDALDGISLTNTITPDGLGRDEDERIGNLV GILDAGNGHGLYHANINVLRKETMEDAVEHPEKYPHLTVRVSGYAVNFVKLTKEQQLDVI SRTFHQGAVVD >gi|316916247|gb|ADCN01000016.1| GENE 73 78539 - 78763 392 74 aa, chain - ## HITS:1 COG:no KEGG:BL0952 NR:ns ## KEGG: BL0952 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 74 16 89 89 125 98.0 6e-28 MTDDNKKQWYFNTVKKQAELGMVSPIEQRMGPYKTKEDAEHAWDIVVDRNARWEEENRRW KNYGVKPAQARPED >gi|316916247|gb|ADCN01000016.1| GENE 74 78816 - 80513 2425 565 aa, chain - ## HITS:1 COG:mll0818_2 KEGG:ns NR:ns ## COG: mll0818_2 COG0171 # Protein_GI_number: 13470971 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Mesorhizobium loti # 262 565 7 297 299 254 45.0 3e-67 MTQLRFALAQIDTCVGALDANAAKVLDYSRKAAAGNAQVVVFPEMTLTGYPIEDLALRRT FRQAAWDKANELATQLNDDGLGDLFVVVGTVGTDRKTSKPRNRLVVLHQGVVWAGYDKHF LPNYGVFDEFRIFSAGDRSVTLDVDGTTIGVAICEDIWQDGGPVADLATKNIDLLLTING SPYEEGKTNTRFELAQRRAAEVNAPVIYLNQVGGQDDLVFDGGSFVVDADGTLIERSPMF MENLTFWDFDSAAEHQAKAEIVPELDPDEEVYTACVLGLKDYMAKNHFTGVTLGLSGGID SALVAAMAADACGGENVWGISMPSMYSSDGSKDDAADLASNIGAHYEVQPIEPLFNAYQQ QLDLDGVSAENLQARIRGVIVMASSNSRGLLAVATGNKSELACGYSTIYGDAVGGYAPIK DLLKTRVWEISRWRNKAAAAGVGIGGLKIVGNEDGNTGIPLKDGVMIPVSSIEKAPSAEL RPGQKDSDSLPEYALLDKVLAAYIEHAHGRADLLADGFDQVTVDTVMRLVDRAEWKRRQY PLGPKVTALAFGRDRRLPVTNAFRE >gi|316916247|gb|ADCN01000016.1| GENE 75 80745 - 80987 72 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDGRGPRISGSAVASPSATDSPLGCLPNASASGGEPEKDLLQLVEHAQSGVDVEVDEGGN GFVETHEMRAMPVGATFLAV >gi|316916247|gb|ADCN01000016.1| GENE 76 80862 - 82013 1362 383 aa, chain - ## HITS:1 COG:L182020 KEGG:ns NR:ns ## COG: L182020 COG1473 # Protein_GI_number: 15672938 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Lactococcus lactis # 9 383 8 379 379 301 42.0 1e-81 MSEHIDIDHELITIRHYLHAHPERSFREFGTSIYLTDQLKAHGIEILHNPLETGVVGLIQ GEAGPGPRIGLRADIDGLPIVEDSGLEFSSVNEGVMHGCGHDLHMTGLLGAAFWLAEHRD KFAGSIKILFQPSEETGQGARAMIDAGLVDDVEAIIGTHNNPNYAPGQLAIGVEPMMAGC VKFRVTLHAQGTHAGYPYKGTGPIEALASIILSLQTIVSRNVTPFHPLVLSVTEVHGGHV WNVVPAEAGFQGTVRYFHKSDGNLVGRRFKEVVEHTAEAYGISADVVWDDFQDPLVSDPG LAKAVAADINDYAQLEPIRQSMAGEDFCEFAKVTLPVFAFVGSNGQEGCADWHSPHFVGL DESIPTFVNFYVNTALRVLNELK >gi|316916247|gb|ADCN01000016.1| GENE 77 82102 - 82788 1185 228 aa, chain - ## HITS:1 COG:Cgl0617 KEGG:ns NR:ns ## COG: Cgl0617 COG2011 # Protein_GI_number: 19551867 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Corynebacterium glutamicum # 9 226 8 225 225 176 56.0 4e-44 MIILANPRSDWNVLRPLLFESIGQTLTMVLVTLVIGGFLGLILGVVLYGTRPGNLFENAV VYRILDIIVNIVRPIPFIIFLAAMQPLTIVVVGTSIGTVAAIFPMVVMCTFATSRLVEQN LVPVDPGVIEAARSMGAGKLTIIRTVLIPEALAPLILAYAFLFIGVLDMSAMAGYIGGGG LGNFAIAYGYQKFDQTVTWTAVIIMIVLVQVVQGIANAIAKRLLKRQQ >gi|316916247|gb|ADCN01000016.1| GENE 78 82785 - 83990 1501 401 aa, chain - ## HITS:1 COG:Cgl0618 KEGG:ns NR:ns ## COG: Cgl0618 COG1135 # Protein_GI_number: 19551868 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Corynebacterium glutamicum # 27 344 44 349 360 300 52.0 3e-81 MSDPIITFDHVVKEFKTRGRGANIARAVDDVSLTIDRGDIFGIIGYSGAGKSTLVRLINA LERPTSGTVTVLGTDITSLSETKLRPIRQKIGMIFQQFNLFSTKTVAQNIAYPLQLDHWR KDYQDRRVNELLEFVGLSEHANKYPSQLSGGQKQRVGIARALATNPEILLADEATSALDP ETTTEVLALLKRVNEEFGITIVLITHQMNVVQQIAGRVAVMSAGRVVESGDVYDVFAAPQ QPVTKRFIATALSGLPEEDRVERLHHEWSGRIVTVLIRQKDVSGTQGHELKASGQNISEL IAKYGVESSLLYGGIDTVKGTAIGAITYEFNGPGWHVDEFLRELAANSDVIDFGTAAKPV AYADAVAGHASYAEDRAHDPLAADTATAPAASAAAHEGANA >gi|316916247|gb|ADCN01000016.1| GENE 79 84124 - 85104 1908 326 aa, chain - ## HITS:1 COG:Cgl0619 KEGG:ns NR:ns ## COG: Cgl0619 COG1464 # Protein_GI_number: 19551869 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Corynebacterium glutamicum # 35 321 6 295 299 187 40.0 2e-47 MTAATQPATPAAPNNNEPVRVNHTARNVIITIVVVAIIAVAAFFGYRAFAGANESSAKGS KGNPVKIGVVGATNPEWVKFKQDAEKAGIYVDIVDFQDYTSENPALDSGELDLNEFQHLL YLANYNVSNKKDLQPIGGTAIYPLGVYSTKVKDIKDLKQGDTVTIPNDETNQARAIGVLK AAGLVTLKGDWTAFSTPAYIDEAKSKVKVTPLKAEQVATTLKDPTIAAGVINNDYVADAG LDPKDAIYQDDAESEEARPYINVWVARKADVNNETYKKLVSIYQQKDVLDALQENSGGTA VFADKFSASELQGFLSDIEKDAKAQQ >gi|316916247|gb|ADCN01000016.1| GENE 80 85064 - 85213 64 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRAIKDTYMAIGHFPSLSRFKRVMVLPDINFGERKSNDSSNPAGNPGRS >gi|316916247|gb|ADCN01000016.1| GENE 81 85297 - 86127 811 276 aa, chain + ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 14 274 3 256 256 127 32.0 3e-29 MEAMTTDTANADIRAVFFDIDGTLTSFTTHTVPDSTIEAIHRLQAAGVKVLICTGRAPSQ MHVVLDTMPVTFDGVVAFNGQYCFDDTGFFASQALDTADIEVILDWLDRHPDVVCNFGEK DYVYFNQSNDLLRATWSKLGKTAPTRYFEDPRTRALDHETFQISPFVGPELEAELVGLCS NVRGVRWHPDFTDLIPADGGKPRGIQRFMAHYGITREQTMAFGDGGNDTDMLAYAGIGVA MGNATAEPKAAADYITDDVDHDGVRNALLHFRVLRD >gi|316916247|gb|ADCN01000016.1| GENE 82 86249 - 88726 3910 825 aa, chain - ## HITS:1 COG:BMEII0881 KEGG:ns NR:ns ## COG: BMEII0881 COG3957 # Protein_GI_number: 17989226 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoketolase # Organism: Brucella melitensis # 15 804 8 789 792 842 51.0 0 MTSPVIGTPWKKLNAPVSEEALEGVDKYWRVANYLSIGQIYLRSNPLMKEPFTREDVKHR LVGHWGTTPGLNFLIGHINRFIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKIT KDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAIMDNPSLFVPAIV GDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILSRISDEELHEFFHGM GYEPYEFVAGFDDEDHMSIHRRFAELWETIWDEICDIKATAQTDNVHRPFYPMLIFRTPK GWTCPKYIDGKKTEGSWRSHQVPLASARDTEAHFEVLKNWLESYKPEELFDANGAVKDDV LAFMPKGELRIGANPNANGGVIRNDLKLPNLEDYEVKEVAEYGHGWGQLEATRTLGAYTR DIIKNNPRDFRIFGPDETASNRLQASYEVTNKQWDAGYISDEVDEHMHVSGQVVEQLSEH QMEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPIASMNLLVS SHVWRQDHNGFSHQDPGVTSVLLNKCFHNDHVIGIYFATDANMLLAIAEKCYKSTNKINA IIAGKQPAATWLTLDEARAELEKGAAAWDWASTAKNNDEAEVVLAAAGDVPTQEIMAASD KLKELGVKFKVVNVADLLSLQSAKENDEALTDEEFADIFTADKPVLFAYHSYAHDVRGLI YDRPNHDNFNVHGYEEEGSTTTPYDMVRVNRIDRYELTAEALRMIDADKYADKIDELEKF RDEAFQFAVDNGYDHPDYTDWVYSGVNTDKKGAVTATAATAGDNE >gi|316916247|gb|ADCN01000016.1| GENE 83 89172 - 90734 2267 520 aa, chain + ## HITS:1 COG:Rv3396c_2 KEGG:ns NR:ns ## COG: Rv3396c_2 COG0519 # Protein_GI_number: 15610532 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Mycobacterium tuberculosis H37Rv # 196 520 2 321 321 478 74.0 1e-134 MANGPVLVVDFGAQYAQLIARRVREAGVYSELVPHSMPVDEILAKDPKAIILSGGPASVF EPGAPTIDTKVFESGVPVLGICYGFQVMAYELGGKVDKAALGEYGKTSATIDDAAGILAD SPAEQTTWMSHGVAVEQAPAGFEVLAHTEGAPVAAMADESRKLYGVQWHPEVKHSPLGQK LIENFLHRCAALPNDWDASSIIEDQVKKIREQVGDAEVICGLSGGVDSAVAAALVHKAIG DQLTCVFVDHGLLRKGEVEQVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIG EKFIRTFEKAQRQVLEEAGARGKEVKFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPK DIKFQLIEPLRTLFKDEVRAIGTELGLPDEIVWRQPFPGPGLGIRIIGEITKERLDLLRE ADAIAREELSKAGLDRDIWQCPVVLLADVHSVGVQGDERTYGSPIVLRPVSSEDAMTADW SRVPYDVLATISTRITNECRQINRVVLDCTSKPPATIEWE >gi|316916247|gb|ADCN01000016.1| GENE 84 91233 - 91583 334 116 aa, chain + ## HITS:1 COG:pli0038 KEGG:ns NR:ns ## COG: pli0038 COG0798 # Protein_GI_number: 18450320 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenite efflux pump ACR3 and related permeases # Organism: Listeria innocua # 2 113 226 337 352 113 73.0 7e-26 MFDSVTTIGLLLTLVMIFSFQGNTILEKPLHIVLIAVPLILQTFLIFAIAYIACRVLKLP YKIAAPAGMICASNFFELAVAVAIALFGTTSPAALATTVGVLTEVPVMLFLVKKRK >gi|316916247|gb|ADCN01000016.1| GENE 85 91604 - 92050 263 148 aa, chain + ## HITS:1 COG:CAP0105 KEGG:ns NR:ns ## COG: CAP0105 COG0394 # Protein_GI_number: 15004808 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Clostridium acetobutylicum # 3 131 2 130 136 158 56.0 3e-39 MSKKKVAFICVHNSCRSQIAEALGKHLASDVFESYSAGTETKPQINQDAVRIMKELYGID MEKTQYSKLISDIPAPDIAISMGCNVGCPFIGRAFDDNWGLEDPTGSEDQVFVEIIREIE KRILQLKQSLICPDSTCKCNGWFRVGLF >gi|316916247|gb|ADCN01000016.1| GENE 86 92006 - 92449 175 147 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 72 40 1e-11 VERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGM LTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLLGYKT PNEVWDEEMAKLQSKQADPKPAVALTS Prediction of potential genes in microbial genomes Time: Fri May 13 12:49:52 2011 Seq name: gi|316916189|gb|ADCN01000017.1| Bifidobacterium sp. 12_1_47BFAA cont1.17, whole genome shotgun sequence Length of sequence - 77238 bp Number of predicted genes - 66, with homology - 59 Number of transcription units - 38, operones - 14 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1468 - 1534 14.2 2 2 Tu 1 . - CDS 1608 - 2873 1528 ## COG1171 Threonine dehydratase - Prom 3025 - 3084 2.3 3 3 Tu 1 . + CDS 2897 - 3010 86 ## - Term 2980 - 3033 11.1 4 4 Tu 1 . - CDS 3141 - 4961 1728 ## COG0366 Glycosidases - Prom 5000 - 5059 4.0 + Prom 4941 - 5000 1.8 5 5 Op 1 . + CDS 5206 - 5817 339 ## Blon_2454 hypothetical protein 6 5 Op 2 . + CDS 5892 - 6353 -70 ## BL1524 hypothetical protein + Term 6361 - 6387 -1.0 - Term 6348 - 6374 -1.0 7 6 Op 1 38/0.000 - CDS 6377 - 7243 1667 ## COG0395 ABC-type sugar transport system, permease component 8 6 Op 2 35/0.000 - CDS 7262 - 8191 1544 ## COG1175 ABC-type sugar transport systems, permease components 9 6 Op 3 . - CDS 8213 - 9502 2154 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 9649 - 9708 3.6 + Prom 9453 - 9512 5.0 10 7 Tu 1 . + CDS 9676 - 10884 1114 ## COG1940 Transcriptional regulator/sugar kinase + Term 10887 - 10935 14.1 11 8 Tu 1 . - CDS 11033 - 13339 3116 ## COG3345 Alpha-galactosidase 12 9 Tu 1 . - CDS 13459 - 13908 439 ## COG0590 Cytosine/adenosine deaminases - Prom 14000 - 14059 3.9 + Prom 13945 - 14004 4.4 13 10 Tu 1 . + CDS 14034 - 16106 2137 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 16107 - 16158 9.1 - Term 16209 - 16241 1.5 14 11 Tu 1 . - CDS 16300 - 17058 873 ## COG0400 Predicted esterase 15 12 Tu 1 . - CDS 17177 - 17758 449 ## BL1513 hypothetical protein 16 13 Tu 1 . + CDS 18079 - 18267 64 ## + Prom 18305 - 18364 1.8 17 14 Op 1 . + CDS 18394 - 18975 679 ## COG0717 Deoxycytidine deaminase + Term 18995 - 19024 3.5 18 14 Op 2 . + CDS 19038 - 20768 1526 ## BL1511 hypothetical protein + Term 20785 - 20839 4.8 - Term 20699 - 20742 -0.2 19 15 Tu 1 . - CDS 20987 - 23974 4592 ## COG0474 Cation transport ATPase - Term 24105 - 24142 0.4 20 16 Op 1 1/0.375 - CDS 24157 - 24990 830 ## COG0657 Esterase/lipase - Term 24991 - 25021 -0.3 21 16 Op 2 . - CDS 25066 - 26364 1085 ## COG0477 Permeases of the major facilitator superfamily 22 17 Tu 1 . + CDS 26452 - 27444 438 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 27481 - 27517 7.2 - Term 27467 - 27505 7.6 23 18 Op 1 . - CDS 27551 - 28963 2005 ## BLD_1472 lipopolysaccharide kinase - Prom 29124 - 29183 2.1 - Term 29124 - 29163 -0.6 24 18 Op 2 . - CDS 29185 - 30312 1601 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 30481 - 30540 3.5 25 19 Op 1 . - CDS 30671 - 31846 1721 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 26 19 Op 2 . - CDS 31910 - 32902 1821 ## COG0208 Ribonucleotide reductase, beta subunit 27 19 Op 3 . - CDS 32917 - 33006 118 ## 28 20 Op 1 18/0.000 - CDS 33213 - 35408 3083 ## COG0209 Ribonucleotide reductase, alpha subunit 29 20 Op 2 11/0.000 - CDS 35524 - 35982 438 ## COG1780 Protein involved in ribonucleotide reduction 30 20 Op 3 . - CDS 35979 - 36245 471 ## COG0695 Glutaredoxin and related proteins - Prom 36285 - 36344 5.4 + Prom 36244 - 36303 1.6 31 21 Tu 1 . + CDS 36375 - 36479 97 ## + Term 36500 - 36535 1.1 - Term 36727 - 36776 16.4 32 22 Op 1 . - CDS 36833 - 37483 655 ## BLD_1459 putative transcriptional regulator 33 22 Op 2 . - CDS 37467 - 38147 1170 ## PROTEIN SUPPORTED gi|23335919|ref|ZP_00121150.1| COG0081: Ribosomal protein L1 - Prom 38177 - 38236 4.6 + Prom 38136 - 38195 3.0 34 23 Op 1 . + CDS 38223 - 38351 134 ## 35 23 Op 2 . + CDS 38342 - 39109 856 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 36 24 Tu 1 . - CDS 39154 - 39360 229 ## + Prom 39221 - 39280 11.3 37 25 Tu 1 . + CDS 39302 - 40408 731 ## BL0662 hypothetical protein + Term 40475 - 40524 18.1 38 26 Tu 1 . - CDS 40402 - 40512 103 ## + Prom 40874 - 40933 1.7 39 27 Tu 1 . + CDS 40994 - 43234 1888 ## COG0515 Serine/threonine protein kinase + Prom 43258 - 43317 1.8 40 28 Tu 1 . + CDS 43412 - 44389 1251 ## COG1651 Protein-disulfide isomerase + Term 44616 - 44660 -0.8 + TRNA 44520 - 44596 77.7 # Thr TGT 0 0 41 29 Op 1 4/0.000 + CDS 44914 - 46377 1702 ## COG3583 Uncharacterized protein conserved in bacteria 42 29 Op 2 6/0.000 + CDS 46410 - 47333 1206 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 43 29 Op 3 . + CDS 47330 - 48280 704 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 44 29 Op 4 . + CDS 48327 - 48956 662 ## BLD_1450 hypothetical protein + Term 48986 - 49026 8.1 - Term 48974 - 49014 9.8 45 30 Tu 1 . - CDS 49041 - 50456 1734 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 46 31 Op 1 . + CDS 50543 - 51835 790 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 47 31 Op 2 . + CDS 51907 - 54102 1648 ## BLD_1447 hypothetical protein 48 31 Op 3 . + CDS 54099 - 55826 1499 ## COG0728 Uncharacterized membrane protein, putative virulence factor 49 31 Op 4 . + CDS 55909 - 57972 1533 ## BLJ_2036 virulence factor MviN family protein + Term 58004 - 58054 12.2 50 32 Tu 1 . + CDS 58092 - 59111 688 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 59268 - 59298 -1.0 - Term 59357 - 59401 -0.9 51 33 Op 1 25/0.000 - CDS 59418 - 60779 949 ## COG1475 Predicted transcriptional regulators 52 33 Op 2 15/0.000 - CDS 60779 - 61801 525 ## COG1192 ATPases involved in chromosome partitioning - Prom 61868 - 61927 3.0 53 33 Op 3 3/0.000 - CDS 62001 - 62666 183 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - Term 62759 - 62787 -0.9 54 33 Op 4 16/0.000 - CDS 62818 - 63351 553 ## COG1847 Predicted RNA-binding protein - Term 63407 - 63466 13.2 55 33 Op 5 . - CDS 63475 - 64482 1417 ## COG0706 Preprotein translocase subunit YidC - Prom 64697 - 64756 2.3 56 34 Op 1 . - CDS 64793 - 65152 218 ## BLJ_2044 ribonuclease P protein component 57 34 Op 2 . - CDS 65185 - 65319 227 ## PROTEIN SUPPORTED gi|23465224|ref|NP_695827.1| 50S ribosomal protein L34 - Prom 65539 - 65598 2.5 + Prom 65423 - 65482 5.8 58 35 Tu 1 . + CDS 65638 - 67140 1621 ## COG0593 ATPase involved in DNA replication initiation + Term 67166 - 67212 11.1 59 36 Tu 1 . + CDS 67268 - 67771 -258 ## BL0639 hypothetical protein 60 37 Op 1 18/0.000 + CDS 67876 - 69000 1468 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 61 37 Op 2 5/0.000 + CDS 69028 - 70266 1019 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 62 37 Op 3 5/0.000 + CDS 70263 - 70733 572 ## COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives + Prom 70745 - 70804 3.2 63 37 Op 4 24/0.000 + CDS 70914 - 73004 3380 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 64 37 Op 5 . + CDS 73072 - 75723 4540 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 65 37 Op 6 . + CDS 75793 - 76359 567 ## BLD_1430 hypothetical protein + Term 76393 - 76459 19.0 - Term 76710 - 76752 -0.6 66 38 Tu 1 . - CDS 76834 - 77238 510 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316916189|gb|ADCN01000017.1| GENE 1 707 - 1462 694 251 aa, chain + ## HITS:1 COG:TM0490 KEGG:ns NR:ns ## COG: TM0490 COG0846 # Protein_GI_number: 15643256 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Thermotoga maritima # 2 245 13 242 246 172 34.0 5e-43 MTKKIAVLTGAGISTSAGIPDFRGPDGVWTKHPDQMSVYDIDLFLRNKEDREYSWRWQKE SPVWNAQPGTAHKALVKLEQAGMLTLLATQNFDALHEKAGNSDNVIVNLHGTIGTSHCMK CHQEYATADIMARLDEEPDPHCHRKLKYRGDMPCNGIIKTDVVYFGEALPDGAMEKSYSL ATKADELWVIGSTLEVYPAASIVPVAAQAGVPITIMNMGHTQYDHLASRLIHEDIAVALP KLVDETIAENK >gi|316916189|gb|ADCN01000017.1| GENE 2 1608 - 2873 1528 421 aa, chain - ## HITS:1 COG:FN1411 KEGG:ns NR:ns ## COG: FN1411 COG1171 # Protein_GI_number: 19704743 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Fusobacterium nucleatum # 21 420 10 399 404 336 46.0 7e-92 MEQKDVLKALQRDHAAELKLAAKRLKGTARHTEIIPSPVLSEMTGHEILLKPENLQVTGS FKIRGAYNKIASLTEEQIARGIVTASAGNHAQGVAYAARERGAKATICMPQITPPLKVDA TKAYGADVVLYGDVFDESAAHAAELADKEGMIYVPPFDDYEVICGQGTIGLEILEDVPNV TDVVVPLGGGGLGAGVALAIKTFKPEVRVIGAIPEGSPAWKDSLAAGRVSPADHVVTSAE GVAVKHPGDLPFALINEFLDDLVTVTERDINEMILLMLEKHKLVVEAAGAVSLAALEHLN LRSRKFAAATGPHVVVPIMSGGNIDTVTMGAVIQKGMIARGRIMNFEVELPDTPGQLVKV ATLLAEQRANVIQLDHDQFKASGHYTNAVSLGVTVETNGPEHIDRILAALREAGFQPKRI Y >gi|316916189|gb|ADCN01000017.1| GENE 3 2897 - 3010 86 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRDTGYLASQRYIRPLADSYLLFTGVPSIENPGYKP >gi|316916189|gb|ADCN01000017.1| GENE 4 3141 - 4961 1728 606 aa, chain - ## HITS:1 COG:BH2903 KEGG:ns NR:ns ## COG: BH2903 COG0366 # Protein_GI_number: 15615466 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Bacillus halodurans # 23 603 5 555 561 528 47.0 1e-150 MTTSQRTVIPDSIRTNGATPNPWWSNAVVYQIYPRSFQDTNGDGLGDLKGITSRLDYLAD LGVDVLWLSPVYKSPQDDNGYDISDYQDIDPLFGTLDDMDELLAEAHKRGLKIVMDLVAN HTSDEHAWFEASKNKDDEHADWYWWRPARPGTTAGEPGAEPNQWGSYFGGSAWEYCPERG EYYLHQFSKKQPDLNWENPAVRRAVYDMMNWWLDRGVDGFRMDVITLISKRTDLSGKLPG EYGSELDDLPVGEEGYSNPNPFCADGPRQDEFLAEMRREVFEGREGFLTVGEAPGVTAQR NEYITDPANGELDMLFLFEHVDFDCEGVKWKPLPLDLPKLKSIMAGYQAAVKNAGWASLF TGNHDQPRVVSRWGDDSSEESRVRSAKALGLMLHMHRGTPYIYQGEELGMTDAHFTRLDQ YRDLESLNAYRQRVEEAKVQSPESMLAGIAARGRDNSRTPMQWDGSVYAGFTAPDAAKEP WISVNPNHAAINAAGEFDDPDSVYAFYKQLIALRHDMPVVAAGDWHLLDADDAHVYAFTR TLGDEKLLVVVNMSGRTVDLPRETAELAAAGITESNVVISTYDAPHAVASLANRELDPWE AAVIQL >gi|316916189|gb|ADCN01000017.1| GENE 5 5206 - 5817 339 203 aa, chain + ## HITS:1 COG:no KEGG:Blon_2454 NR:ns ## KEGG: Blon_2454 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 203 1 203 203 412 99.0 1e-114 MDASHLFTAALRLRSPWRVGSADFRDADVDGREPHITIGFEPGRGFMLLFEAWVWLYRLC SWMMHSRLEPMKELARLFRRHFATIIYLTCGSSHINGSSDCDAQEQLRARLDCLLEPTGA GIDDLVDTPAGIWWGFRWHTGFQANPASGTAPDFGVGPVRMSIDCRLNRDRIRCPGSRFL SFFTNRDKPISAGHMLRNTKSAE >gi|316916189|gb|ADCN01000017.1| GENE 6 5892 - 6353 -70 153 aa, chain + ## HITS:1 COG:no KEGG:BL1524 NR:ns ## KEGG: BL1524 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 153 1 153 153 253 99.0 1e-66 MSRFVKIARNREPGQRILSRFARQTVDMWTGTSQWHGDTADALNCTVSRTVSSLFHSHNE QNHMTFVRHRHINRPSPLLWRFPVWQQDRRASSGESRRRLGWKRTFTSQSPAIQDWPTAR PNMTSRVRDLSGRPGRETAHGAVSLIGSSRSTR >gi|316916189|gb|ADCN01000017.1| GENE 7 6377 - 7243 1667 288 aa, chain - ## HITS:1 COG:SP1895 KEGG:ns NR:ns ## COG: SP1895 COG0395 # Protein_GI_number: 15901722 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 35 288 21 278 278 169 40.0 4e-42 MTTATVTPSKSGKPAKFRRDHKINWWLTAAVAVLSLTILIPLYFTIVTALKTPAEAGTFA LPTSWQWHNFADASAKVNYPKAALNSAIITVAAVVLTLLTNTFVAYAVARNMDKRFFRFL YYFFIAAMFVPFPVVMLPIAKQMGSLHLDNQVGLIILYTVLGLGTNLFIATGFIRSIPVS LEEAARIDGASTWRIFWTIIFPLMSPINATIAILTALWAWNDFLLPLIILTDQSNQTIPL AQYVFSSQFATNYPMAFSSYLMAMAPILIVYIFAQKWVVGGVMRGAVK >gi|316916189|gb|ADCN01000017.1| GENE 8 7262 - 8191 1544 309 aa, chain - ## HITS:1 COG:SP1896 KEGG:ns NR:ns ## COG: SP1896 COG1175 # Protein_GI_number: 15901723 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Streptococcus pneumoniae TIGR4 # 30 307 18 295 296 180 39.0 3e-45 MSHATATKTAAKKPAKKKVSAFSTRKVDPAYYWMVVPAAIIFAFFLYLPFLDGVKYSFTN SQGYGDYKFIGLKNYIALFQDNRVGHAYLFTFLIAILITVLINVIALFLSVLLNSKIAFK NGFRAIFFIPYTLSVLVIGYVFKYIFMNPLPELGKALGIKWLSTSLLTNEQLSWIPIVFL AVWQGIAYSVLIYLAGLQTIDDEIYEAAAIDGVNAWQKFWKITFPLIGPFFTINLVLSMK NALGTFDQVVALTEGGPNSSTETVTYLIWKGGLTGGEYAYQTANAVLFFIVLAIIAFVQL RISRSQEQI >gi|316916189|gb|ADCN01000017.1| GENE 9 8213 - 9502 2154 429 aa, chain - ## HITS:1 COG:SP1897 KEGG:ns NR:ns ## COG: SP1897 COG1653 # Protein_GI_number: 15901724 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Streptococcus pneumoniae TIGR4 # 30 361 18 350 419 138 29.0 2e-32 MLSDSPHATPRLKRLAVRTAAVMCAIAVGFGLAGCGSSTAGTVTLDFFQFKSEAADQFKS MVADFEKQNPTIKVNINNSANAQTDLRTRFVKNRVPDVITFNGDISFGNFAASGVFYDFT DEPIVDTLNPGMVQIAKNLVQTTDSSKKRLYGLPFAGNASGYIYNKALFRKVGLDPENPP TTWSEFTDMLNTFKDAGINPLQGSVADAWTTQAPLASLTGTLVPESKYTELKQGKTTFQE LWKTAVEKESELFTYSTADTGVTYQQGTQNFAQGKAAIIPLGTYAIPQILLINPDIELGF AQMPATDDASEQILTAGDDVMLTIGANTKHPKEAMKLVEFLMQKDQLDAYADAQSAITPL KDTYFGNDALETVRPFFEENRLADFCDHYIPSSINIGGYLQTMVTSGNTDRFLNQMQTEW DKVQARTFE >gi|316916189|gb|ADCN01000017.1| GENE 10 9676 - 10884 1114 402 aa, chain + ## HITS:1 COG:VC2007 KEGG:ns NR:ns ## COG: VC2007 COG1940 # Protein_GI_number: 15642009 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Vibrio cholerae # 19 348 19 341 405 91 26.0 2e-18 MSDVNAIPQWFSGSEHTHRVAAAIAQYGPIARTTLAQMLGLSQGALSRITSDLIYAGVIE ELPAEAGPSGKLPERFTPRESSDRRGRPQTSLVLCSNARTFIGVKVHGMSIVAAAVNAHG EVVSGRHEMPIGADQSAEYVVSAITRLVRECSADIASSGLPSPTAVGVAVGGHVVDDSIV TFAPFLHWDGATDLGTMVTEATGLPCGVFNDIDSLLVDASWFGPGVGVDMFAVVTIGVGV GYSLAVNGKPVQYPDKSYGLVGHVLIDPEGPRCTSGHIGCSQCLTDDSIAEQYSAIVGRA VSFEDFARDAKERVPQATQLVNRTCFRLGSLVATVTNIAMPGHVMIAGESAFLAKLGTDS LRDGIRFYRHSQTQPVKFTIMDHDWQLWAKAAASRVIVKHIG >gi|316916189|gb|ADCN01000017.1| GENE 11 11033 - 13339 3116 768 aa, chain - ## HITS:1 COG:YPO1581 KEGG:ns NR:ns ## COG: YPO1581 COG3345 # Protein_GI_number: 16121851 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Yersinia pestis # 39 768 20 708 708 385 32.0 1e-106 MAENTSTFTGAAADGTALTAVYLTQPAANVAIGLVFAGSDLPRIVHWGRPLAKPDTLLAA YDALKPQRVSGALDDTVWPSILPTQAESWIGEQRVVLRRAGVELFPKFTVTNIETGGVLE ATLDAVSGESYTDVAGHARATGPARVPGVIVTARDEEQGVEVEWHLELLPGGLVRQKATV TNLFGADAGAPLEIGKIELGFPLPESAGEILTTTGHHLRERSPQRQPLTVGRFEKPQLAG RPDFDASLLLTAGVPGFGFEHGDAYSVHVGWSGNSVLSAERLPYTTGVIGGGELLFGGEV TLAGPGEGQNSYDTPWLFGSYGDGLNEIAARFHSYVRSLHPRLFSHGRPVILNTWEAVYF DHNFDTLKALADRAADSGVERFVVDDGWFGSRRDDTSGLGDWQIAQDVWPDGPKSLKALA DYVHAKGMEFGLWFEPEMVNPDSDVARNHPDWILSPTAGRLPLQGRTQQVLDLTNPDAFD YIYGCMDQLVGELGIDYIKWDHNKLVTEPGSRRSGRPAVHAQTLAVYNIFKGLKTAHPGL EIESCSSGGGRVDLGILEHADRIWVSDCVDPVERADIQRYTSLLVPPAMMGEHVGASPAH STQRATSQELRMAMAFFGHMGIEWNLLKEPDEALAKLAVWVAEFKKHRDWFAIDTCVHAD SNDPAVRLDGMVMPNRDAAIYRFTQLTTSQTYPAAPVHLPGLDPERTYRVSPLDPSLDLT GLTNGQSTLGWWNEEGVVLTGEALQRYGIRPPSLHPQQAVLLKAVALS >gi|316916189|gb|ADCN01000017.1| GENE 12 13459 - 13908 439 149 aa, chain - ## HITS:1 COG:Cgl0229 KEGG:ns NR:ns ## COG: Cgl0229 COG0590 # Protein_GI_number: 19551479 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Corynebacterium glutamicum # 7 149 17 159 159 151 54.0 4e-37 MEYDEAMRRALELAGQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIAMR QAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPRDP HIGHSPEVHGGVLEGECQSILTDFFAQRR >gi|316916189|gb|ADCN01000017.1| GENE 13 14034 - 16106 2137 690 aa, chain + ## HITS:1 COG:lin0795 KEGG:ns NR:ns ## COG: lin0795 COG0025 # Protein_GI_number: 16799869 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Listeria innocua # 1 683 1 673 682 360 35.0 4e-99 MAVFELILCIIAAVVVSSFVSRFVPKVSTPLVQIVLGVLVTYLPFFPDATLDPELFMVLF IAPLLYLEAHEIDKSALLKTLDLSLSLAIGLAIVTMAAVGFTLHAVWPSITLASALALGA ALGPTDAVAVSSLGKEASLTQRQRSVLKGESLFNDASGIVGFQFALAAAFTGEFAVGQAA GEFVISFFGGTLFGLVIAAAANWLFETVRSLGWETTTTRILMELFLPFLLYLGAEEFNVS GILSVVAAGLFIRFDRTGVGPNVARTNIVSTSVWGVLSFSLNGAVFILLGMQLPRAMRAS WSDPYISNTVLIGIILLVTLVVIALRFFWIAAMLRVARDTITGQRRKMTPERWRSAAVMT FGGPKGTITLSLMFTIPYYIAGGAPFPMRDELIFIASGVIIVTLLLANFLLPLLAPNRGK DPSAEMIPVTIDVLRATVEELTGRITPENRRAILMVIDQYTKRIGRLQQRIGDTDPQGFE QLQIEALHWEKEFVRDRLADTKAHPAADTATQELNVEACERMLDQIMNTLRHTSTDPTSG HAVSQIRGRVRMFQRQMSNYAKRTVSKIRHTTPLVSEDQIFARTRELQVEAIHHVIGRLI DEMGQDTYNTEHCSALLLDYRRAEASLQARPTMSGTTETITQVEDVKRESYGIELGMIQD MYEAGDINRAQARSLRRNIYVMQVDADSGI >gi|316916189|gb|ADCN01000017.1| GENE 14 16300 - 17058 873 252 aa, chain - ## HITS:1 COG:lin0589 KEGG:ns NR:ns ## COG: lin0589 COG0400 # Protein_GI_number: 16799664 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Listeria innocua # 46 242 19 206 219 60 27.0 2e-09 MSKEANASQPLIGRESTTVPGRFGEPLTVEHSVTSRGGFDQHATHPLFLCLHGWGSSEED MADIMRLIAPYNDFVALRGPLTLAPAREGSPDPGNYAWFHDALPIGDDRDYDAYAAATAV DRWVADNIPADRDVVPLGFSQGGLVAVHLLRINPERYRAVVSLSGFNAPGQVPGTAPADS RLADYDIPVFYTYGKNDGVIPKYELFATAAWLEEHTWLKTKSYHGLDHNVSLEEFADLRQ WLLDNDITSGVL >gi|316916189|gb|ADCN01000017.1| GENE 15 17177 - 17758 449 193 aa, chain - ## HITS:1 COG:no KEGG:BL1513 NR:ns ## KEGG: BL1513 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 2 193 95 286 286 345 100.0 7e-94 MAAVLIGITLILVIAARVTMPRYATHGGVGAGGIIALVCAIVCLVIGVAVGVLFPEGLIQ QSNDKAPVEDTAQMEQGIEQAAGACKEGWQGLDTGGLPGITTVQMCTDPRVAFVSFESES SAAISRAPIESKISELLSQYADNEQTKGDWRLLNGKRWMVFGEASKMTALQQQWGGELET ITAAADTADSGNA >gi|316916189|gb|ADCN01000017.1| GENE 16 18079 - 18267 64 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAWEWRSFGGMIQGTKRTPAVARRGEKGERRRKGVQLSGTAAAPDQLSADIFYITTAFWV YL >gi|316916189|gb|ADCN01000017.1| GENE 17 18394 - 18975 679 193 aa, chain + ## HITS:1 COG:ML2507 KEGG:ns NR:ns ## COG: ML2507 COG0717 # Protein_GI_number: 15828356 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Mycobacterium leprae # 1 188 1 188 190 262 67.0 2e-70 MLLSDRDILAAQSAGHISLDPWTPEMVQPASIDVRLDRYFRLFNNHAYTYVDPAENQGAL TEQFEVAPDEPWILHPGEFALGSTWEYVKLDPSIAARLEGKSSLGRLGILTHSTAGFIDP GFEGHITLELSNVSTLPVKLWPGMKIGQMCFFQLSSPAEHPYGSKGTGSHYQGQRGPTPS RSYENFYRAHIDD >gi|316916189|gb|ADCN01000017.1| GENE 18 19038 - 20768 1526 576 aa, chain + ## HITS:1 COG:no KEGG:BL1511 NR:ns ## KEGG: BL1511 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 556 1 556 573 528 99.0 1e-148 MTNSDGGFQFDFQQPEKPVRPTVPPIPGQETAAYSTEPTAQATPALQFPQSVQSAQPTQP TQPTQFVQPAQVAYASQPTQAVPTVQAAQPTQPIDPAMTQPFSPQFLAAVAAQAPQPAAA TQPVVSETPIAAAPGQQQYVWDQTTQSFRPVEPTAPVTPAAPAAPAAPATSPVSVASNAA TQAFHPNQAEQPAVDAEATQAFQPDQVMATQPFEAQAMPNAETAAAQAYGASSTVSGETV AMPATQVASADDAAATQVFQPAALAASAQAQPAVMPPSIPLDQVSDEDDSDGAEPRHGGS GKKNTSKIVGIAVAVVAVIALVVAGLLWWHSNSSKASQAVALAECKVAAKQYTNAQKKLT TAISNGQTSAQTSTSDVADANTLTTLNQALQDAGNPADTAKCDSSLNATELKSHTKELQN DASDMADKTDAINNAIKAVNTSKATADTNTLKSNLSSAISQAQGTLDNSAGSVADENTRT ALQNAITEANTVMNGTSPSESDVNNAISKLQKAESDVTASMQAKQQADAAKQAQEEAQQK ADQEAQQKSQDESNNSDNNNGGDNSTSTDGTDGSNN >gi|316916189|gb|ADCN01000017.1| GENE 19 20987 - 23974 4592 995 aa, chain - ## HITS:1 COG:all3375 KEGG:ns NR:ns ## COG: all3375 COG0474 # Protein_GI_number: 17230867 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Nostoc sp. PCC 7120 # 42 995 23 955 957 660 41.0 0 MDDLKDQSAVSTTATNGVVESQEVRAQEALLGDTDPSLTSADDVAKALNVDPSHGLSEEE AKRRLAKFGPNELASAPPVPKWKKFLAQFQDPLVYLLIAATIISVIAWFIEKANAQPGAE GGEVLPFDAIVIILILIVNAVLGYMQEAKAEAAVEALAQMTAPQTSVLRDGKVMRINTAD VVPGDIIVLAEGDSVSADGRLVNAASLRIAEASLTGESVPVGKKPDTLTEAKALGDRANM IFNGTSVTQGTGRAIVTGTGMNTQVGKIADMLSATEDEKTPLQKEMDYVSKILGIAVCVI AVVVLVALAVLEGFNDVHDVIDSLLLAVSLAVAAVPEGLAAILTVVLALGVQRMAAHNAI VKKLHSVETLGSASVICSDKTGTLTRNEMTVERVVTPSGEVQITGTGYAPEGRMVMTGGV SPESEQAQIVADEVVATLVAGTLANDGELREENGRWEIVGDPTEVSLIVAARKVKADRKI KRYTRVGEIPFTSERKRMSIIAKDSTDSDKLTVFAKGAPDVLLSYCTRIRVGGQVRKLTE GDRQSILATVERLSSEAYRTLGEACRPLETGSLADVPGVSVNAAGQVSDIADQAEAIETD LIWNGMVGIIDPPRTEVRDSVTEAHRAGIRTVMITGDHPLTAARIASDLGIIAKDGKALT GDQLDQLPDEAALDKATSEVSVYARVAPEHKLKIVESLQRQGNIVAMTGDGVNDAPAVKS ADIGVAMGITGTEVTKQSAKMILADDNFSTIVAAVREGRVIFDNIRKFLRYLLSSNVGEV FTVFLGVVFAGFLGIRQPETVGVTVPLLATQLLWINLLTDAAPALAMGVDPQTDDVMGRK PRKVTDRVIDASMWGDIIYIGVIMAIVTLIGMDMHLSGGLFTDRSVDAIGHEAQMTEART MGFTILVFAQLFNALSSRSHLQSAFVGLFSNKWLWGAIGLSVALQLVVIYVPFLNGPFGT VALSPMAWVECICLAAIVLIASELRKIVLRAMAKR >gi|316916189|gb|ADCN01000017.1| GENE 20 24157 - 24990 830 277 aa, chain - ## HITS:1 COG:CAC2917 KEGG:ns NR:ns ## COG: CAC2917 COG0657 # Protein_GI_number: 15896170 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Clostridium acetobutylicum # 23 277 12 270 272 261 46.0 8e-70 MMYGMQYIQQTIVGIDGSEARFFGYVADNSEEMEPDRIRPAILILPGGGYAMTSDREAEP VALQFLAKGFAVFVLRYSVQPSRYPVALLEAAEAMRLIRANADQWHVNPAQVAVLGFSAG GHLAANLATSVGDEDIREQGGMDPDAVRPNALMLSYPVITAGKYAHRGSFQCLLGDQAHN QALLDKFSIEKHIDAKTPPVFVWHTMTDDAVPVENTLMLIQACRAAGVSIEAHLFPEGSH GLSLANAETAGNGFYAHIVECVQCWPDLAEAWLRRLF >gi|316916189|gb|ADCN01000017.1| GENE 21 25066 - 26364 1085 432 aa, chain - ## HITS:1 COG:BH3211 KEGG:ns NR:ns ## COG: BH3211 COG0477 # Protein_GI_number: 15615773 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 25 405 8 357 388 103 26.0 5e-22 MIFGLSLLYWGLWLAILILWMGRFVTSFLSIYLVSALRLDEGVVGTVVAMYGFGAIIGCL FGGTLSDRFGRQSMIIIGEIGAAAALLVVSVLTDPVSLGAALFVYGAFASLPSPAIAAYI ADVVPAERRQRAYVLQSWAINFGYAIGPIVANQLVKISYSLMFYVEAAVMIAVTILLIAF FREVRHLGITVSVPSAVRHEDECSVTHAEFAGIERPNHSDAAPAASVKGAMSRNWRRVLT DTPFLGFSLLMFGYFLVYFQSTSGLPIAMTDLGLGLGEYSVLLTINGGMLCLLQIPAMKL FARMGNSRVLVMGLAVTVIGYAVQAAAHSWGGFALAVVLWTLGELGTFPIATTTVAAMAP ASARGTYQGVYNVVWSASIALAPLIGGWTISNFGGRTLWIACTVVLIAVTLGLKLTKGSR DRAMARSLHDSL >gi|316916189|gb|ADCN01000017.1| GENE 22 26452 - 27444 438 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 69 326 7 248 255 173 37 3e-42 MAIKKGPTKGSGGKHRNKLKGYGPTPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVD KFASADTSDLVYGRNSVLEALRVGVPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEAD RLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIA LDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTK ALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPI SSSVESLNASVAAGISLYAVSNARRKAAAE >gi|316916189|gb|ADCN01000017.1| GENE 23 27551 - 28963 2005 470 aa, chain - ## HITS:1 COG:no KEGG:BLD_1472 NR:ns ## KEGG: BLD_1472 # Name: not_defined # Def: lipopolysaccharide kinase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 470 1 470 470 870 99.0 0 MELNDLPQMDPRALKATSVKAEDEHANSAEPQALKITAASSNPKMFTLPWHKPLATWPED LLANLPRGISRHVVRFVHVGDEVYAMKEITRQVAEREYEILRRLQKLELPTVTPIAVVIG RHTREGEPLEAILVTRHLKFSLPYRALFARNLRPDTAERLIDALAVLLVRLHLAGFYWGD VSLSNVLFLRDADAFSAFLVDAETGDLQAQLTDGQREYDIDLARTNIIGELMDLASGKLL PGDVDEIEVGNRLVDRYHSLWSALTDTDKFNPDEMWKIEQRVNKLNDLGFDVDELEMKTA EDGKRVLVRPRVVDAGYANRKLLRLTGLDVQENQARRLLNDLDAYRASTWREGEDLEIVA TDWMREVFEPTVRMIPREYRSQIEPAQFFHEVLDHRWFLAEKAGHDVPMGEAVTSYIDNA LPSYSLDSKALAELNEEADSGVIDDESTYSDPDDDGYNPDDDPDAAVWSH >gi|316916189|gb|ADCN01000017.1| GENE 24 29185 - 30312 1601 375 aa, chain - ## HITS:1 COG:Cgl2410 KEGG:ns NR:ns ## COG: Cgl2410 COG3839 # Protein_GI_number: 19553660 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Corynebacterium glutamicum # 1 374 1 375 376 440 62.0 1e-123 MAEVVFDHVTRIYPGNDKPSVDDLNLDIKDGEFLVLVGPSGCGKSTTLRMLAGLEEVNKG RILIGGKDVTTMQPKDRDIAMVFQNYALYPHMTVADNMGFALKIAGTPKDEIRKRVEKAA EILDLTEYLDRKPKALSGGQRQRVAMGRAIVREPKVFLMDEPLSNLDAKLRVQTRTQIAA LQRQLGVTTLYVTHDQTEALTMGDRIAVIKLGILQQVGAPTELYDRPVNVFVAGFIGSPS MNLNTHPVVNGKAKIGEDTVDLPAEAVNKLTAEDNGQIVVGFRPEDAGLAPADDPNAFSL KVVNVEDLGSDGYIYGNIITDGSAAEASQVMSDQNKLTTIRVNPRALPKVGATVKIKIDP AKMHLFAPSTELRLN >gi|316916189|gb|ADCN01000017.1| GENE 25 30671 - 31846 1721 391 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 3 262 2 258 328 125 32.0 1e-28 MEQEPLVSIIIPVYKVEKFLDECVASVAAQTYANLEILLVDDGSPDNCPAMCDAWAARDP RVRVIHKPNGGLSDARNAGIAGATGSYLYFADSDDTVAPTLVEDCLNAMREYDADLVMFQ FDTISENNKPLLSNYRHNDFTEVQVLTPVEAIKKQVKAEIDGYFWAFLAPASTYQGTGFS FPVGRKIEDLSRICNVIGEATRVVRLPKALYHYRMREGSITASWDPQLTRDWTRAADDRE EYIVHRFPELKGFMTLQQLNFFANLDYETMRQSLIAGLKIDPEDADALRRRIEGLTKSAD EGDEPVPETLRELLGLLKLGITKVADGTFGKADGSSTDGDAENDDVTLADRFRDMREDWR QLRIQRIEDAEERKAERKAARNGVTFESVSH >gi|316916189|gb|ADCN01000017.1| GENE 26 31910 - 32902 1821 330 aa, chain - ## HITS:1 COG:MT3133 KEGG:ns NR:ns ## COG: MT3133 COG0208 # Protein_GI_number: 15842613 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Mycobacterium tuberculosis CDC1551 # 12 330 6 324 324 526 82.0 1e-149 MAPISIPRKPLKLIDRVSAINWNRLEDEKDLEVWDRLTGNFWLPEKVPVSNDIPSWQKMT EDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIF STLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEGDNPYKRKVASTLLESFLFYSGFYLP MYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNEL YDNEVEYTQSLYDRVGLTDDVEKFLRYNGNKALMNLGYPALFPAEICDVNPAILAALSPN ADENHDFFSGSGSSYVMGKAEETDDDDWDF >gi|316916189|gb|ADCN01000017.1| GENE 27 32917 - 33006 118 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRTVYRALLRLTAPEEFENKSNDDNDNE >gi|316916189|gb|ADCN01000017.1| GENE 28 33213 - 35408 3083 731 aa, chain - ## HITS:1 COG:MT3137 KEGG:ns NR:ns ## COG: MT3137 COG0209 # Protein_GI_number: 15842617 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 27 731 26 725 725 1018 72.0 0 MTDLTATGLPLDNTADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGH VATNIKRFASTAERLDYLISNQYYNPDVFAQYSAEFLDRFYEHVESAGFEFGTFLGAFKF YTSYALKTFDGRLYLEDFPQRCAAVALELAAGNEAQATEYVDEMLAGRFQPATPTFLNLG KAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQS SGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLAL GVVIPDITFELAKQKAQMALFSPYDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDAR KFFTTIAELQFESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAH VGRDISCNLGSLNIAKTMDGGLAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGL GQMNLHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYA KPAGQGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNL QAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTNDNLGYYKDAYEIGW KAIVDTYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQQALEG TEVQGCVSCML >gi|316916189|gb|ADCN01000017.1| GENE 29 35524 - 35982 438 152 aa, chain - ## HITS:1 COG:YPO2650 KEGG:ns NR:ns ## COG: YPO2650 COG1780 # Protein_GI_number: 16122859 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Yersinia pestis # 18 152 4 133 134 160 60.0 7e-40 MSLSQPEFAAEGKTIGALVYFSSASENTARFVAGCRLQDEGINVYRIPLRAAAPALNVRE PYVIMVPTYGGGVVKKAVPIQVKRFLNDPANREWIRGVIASGNTNFGEAYCAAGDIIAAK CKVPYLYRYELMGTPEDTAAVRNGLVRFFTEQ >gi|316916189|gb|ADCN01000017.1| GENE 30 35979 - 36245 471 88 aa, chain - ## HITS:1 COG:AGc102 KEGG:ns NR:ns ## COG: AGc102 COG0695 # Protein_GI_number: 15887421 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 73 11 83 83 82 42.0 2e-16 MTVTVFTKPHCPQCDATKRQLTKLGVPFETVDLTQNPSTLEQLQAAGFQQAPVVITPDNS WTGYRPDLIREVAQQVAADNRAAATVSA >gi|316916189|gb|ADCN01000017.1| GENE 31 36375 - 36479 97 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIFRHSHAPPKIGVQRPAQSHVALFTFAFEPLFD >gi|316916189|gb|ADCN01000017.1| GENE 32 36833 - 37483 655 216 aa, chain - ## HITS:1 COG:no KEGG:BLD_1459 NR:ns ## KEGG: BLD_1459 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 216 1 216 216 435 100.0 1e-121 MIPAYDETYLPDAMANLAGAFDYALNDCGLPVGLFMDFFATSEAAALFGRGTPKYVCGMS GEELVAEIMRQTGWARILDMPPAALRAGSTPEYWAGWVLAYCQWTRGVRFSDILDVLSLD DIVRLHPTLHEADESRFVDVYDERAAHNRTEGDSRLHTIRVRAGLSQSGLARRSGVTLRS IQMYEQRRKDLGKAAVSTVLALARTLGCRIEDLLEP >gi|316916189|gb|ADCN01000017.1| GENE 33 37467 - 38147 1170 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23335919|ref|ZP_00121150.1| COG0081: Ribosomal protein L1 [Bifidobacterium longum DJO10A] # 1 226 1 226 226 455 99 1e-127 METASIELWHGSSHVIKHPEYGLVKPNNDYGRGFYCTRSVELAKEWACAGLDDGFANRYT LTTDGLLFLDLSQPPYTILNWLAMLVENRRFQPTTAVAAQGIEYLKQVFLPDASQADVIV GYRADDSYFSFARAFVNNAISIDQLAEAMRLGELGKQIVLASPQAFAALRFQGCEIARAS TYHGLRNERDRTAREAYRRKSAEADLDGLFMRDIIREKVTNDDPRL >gi|316916189|gb|ADCN01000017.1| GENE 34 38223 - 38351 134 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDTVVYVRTQREMYTNVYNTDVRSHAPQWRSGRATAIGIWD >gi|316916189|gb|ADCN01000017.1| GENE 35 38342 - 39109 856 255 aa, chain + ## HITS:1 COG:VCA0194 KEGG:ns NR:ns ## COG: VCA0194 COG1226 # Protein_GI_number: 15600964 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Vibrio cholerae # 10 204 17 213 280 115 36.0 6e-26 MGLKTWKKWTDWPLMVLSVVFLVVYSWEILSRTHIALCETVINVIWVVFVVDYVVSLWLA DDRWQWFKHNLFTLLTIALPMLRPLRLLRLLTVLHVLNRTSGMVVRGRITVYAVGAVGML MYVGALAVYSVERGASGSTITDFGTALWWAFVTVTTVGYGDFSPVTFQGKIIAVVLMFTG IALIGIVTATLASWIVDQVNLETDRREDAREKEVAKEAAQEAIATSANPEIDLLREEVRE LTATVAGLRTELERR >gi|316916189|gb|ADCN01000017.1| GENE 36 39154 - 39360 229 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSRGGSPPAVGLNGFSFAFMWTASSLNQPKIKIIKNIKKIKIIKSWVEPTEENSRGDNDS AAIRGDNN >gi|316916189|gb|ADCN01000017.1| GENE 37 39302 - 40408 731 368 aa, chain + ## HITS:1 COG:no KEGG:BL0662 NR:ns ## KEGG: BL0662 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 368 1 368 368 697 99.0 0 MKAKENPFKPTAGGEPPLLIGRGKVIRDFEKGLDNGVGAPGRIMLVTGARGTGKTVMLTV FGDRAKARRWDVIEETASAGLCERLVDALRIGRGALDHLAIRPSLTFAGAGIGLGEAELS PKRMPETLRSAIAGRLDALEKRHAGLLITIDETQAAERSDMIAIATAIQHQIRERRNIAI VFAGLPQMISDLFNDEVITFLRRAKTNILTDIPLDEVRDAFATTFRASGMSITDAQLSTA ANVTAGYPYMIQLVGYHIWDAADMRDSDTIIDADVTAGIEEARIDLDNAVCIPELQGLSK NDREYLEAMAASDGPSPTVNVAQRMGKTPNYAATYRKRLLDAFVIRETERGEVDFAVPFL REYLRRNQ >gi|316916189|gb|ADCN01000017.1| GENE 38 40402 - 40512 103 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDGLLSATQQAVHCVSECEKSLYGTEYIDTVHCADY >gi|316916189|gb|ADCN01000017.1| GENE 39 40994 - 43234 1888 746 aa, chain + ## HITS:1 COG:L138452_1 KEGG:ns NR:ns ## COG: L138452_1 COG0515 # Protein_GI_number: 15673869 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Lactococcus lactis # 28 253 12 220 431 108 28.0 3e-23 MHQQGIRMEGMSDLNALNLEPGEVVGGYTLISRLGSGAMGSVWRVRDDGGTTYAMKILRD SLTDESVAGSGSASTALHDPDLKPDVTPRERLRREAMALKKINHPGVCGIVDMELDDTLA FIVTELIEGKNLKDDVAANGRYVGDDLERLARKLIEATKAVHAAGIVHRDIKPTNVMVSA AGPVLVDFGIAMGEGESHVTRTGLVMGTPGFIAPEIIDGAESDDATDWWSVASVLAFAAT GAPVFGTKPMMAVLEREASGNANLSGLPAGTLAAFRSALDPDRRDRCTPDQLLNAIALDA LNPNAWQGEQAGPFAAGAVAGQPAAIVAEAAEAMPPFGAAGGVDRNNPRTIWRAAEEAAE APTMAVFSGNKGDNGDGETAVFSPAGAATATLPLADMPPRPPAGAEQATQLLPDAAADFT DDAGTQVLTGATTPMPDQTTPLAERTTVLPTPQPSSFPPSGTAQSSWDPASNQPTAVDPA IRPALQRIIDQTAQAAPTETMVQNPPMPNPVDVKRGEYLQRGTLPLILLAAPLAALAANA PLVAIIAATALLWLLLTLAYNTEPQLEREGKRGGERKNSDSWIRVATFPWHLVKALLLAI PRILLLVIIYMAGTAVATAALALPVHTISWYFTADWGIPVPLLNDVPFSASGLALGGFMA IGWLVTVFAPQSMMIRLGGGVLRGLKHSRPAGAPSTEVGGAPPAPVAPAPKGGGRGTVLF TIWAIITVALCAMPILGMPINWMPFA >gi|316916189|gb|ADCN01000017.1| GENE 40 43412 - 44389 1251 325 aa, chain + ## HITS:1 COG:ML1667 KEGG:ns NR:ns ## COG: ML1667 COG1651 # Protein_GI_number: 15827883 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Mycobacterium leprae # 104 279 72 234 264 68 31.0 2e-11 MSDPKRQAKRATRAERRAAEEAAQQARAEQAAKERKQQTIIGCIVVAIIVVLVAIAGFAV YKAMRPSNTSSSSQQSNMTVDEAYSKLKKVSTQPANADDKAGFVISNKGYGQKAEGAPTV SIYMEPLCPGCASVNRQLDPTLVKLMNAGQLNIDLHFLNFQNNKSSDNYSNRVFNGAIYI AEHDDDPDHLMSYLSNIYAEDFQPGELSNYEPVNNAKLEKQAVKAGVSEDVAAAAFSGKN EYLDWLTASNNYTILRPELFNSSGAFSSPTLTINGEYWDLKQLTLADTNMVDGFLKSIGL DADQVGVEGKMPSIGASGKPISVAS >gi|316916189|gb|ADCN01000017.1| GENE 41 44914 - 46377 1702 487 aa, chain + ## HITS:1 COG:BH0055_1 KEGG:ns NR:ns ## COG: BH0055_1 COG3583 # Protein_GI_number: 15612618 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 16 284 6 275 320 85 26.0 2e-16 MARRWTPQRFVTLRRIRVIACIAATSIALAGSFAFTARKSVALNINGQTTQVTTYAMTAT RLLEEQGVDIKTHDIVTTSSGDQLANHAVVTVQSAYQTTINIDGTSVPFWTVATSADQLL GFFEENQNNATKITVDIDNVYNQLTGGLVINQDGPVTVIADGKTSVAPNGKLPAASILDS KGIVLNKEDRVSVEKDGDTTILRVRRVTHGEETRTAVVPYSTQTIIDSNLPEGQSEIRQQ GVNGEKTQVYNVTYVDGVAESETLKSETVTTMAIDQIIAVGAAKSDTDKGSDKKSDSADN GKADSGSNNQHESSGNNANNTGDKNNSSSGNNTNTDTNNNAGNTGGNNSGNTGNTGNTGG GTNNNSGSSGSDSGTTTTPSGRLWHATVAQAQAYAAGAAAQRGWTGNDWDCLVKLWTRES SWLWYAENASSGAYGIPQSLPADKMAAFGANYRDDAAVQIDWGLWYIAQAYGSPSKAWQH SEQVGWY >gi|316916189|gb|ADCN01000017.1| GENE 42 46410 - 47333 1206 307 aa, chain + ## HITS:1 COG:Cgl0886 KEGG:ns NR:ns ## COG: Cgl0886 COG0030 # Protein_GI_number: 19552136 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Corynebacterium glutamicum # 6 298 4 288 293 255 51.0 8e-68 MNDTIPATGHLLGAADIRRIAADAGISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVME VGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALTVTPE NVPDFSDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKIY GTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADDPAAPGTANSTDDGTQR ELVFRLIDAAFGQRRKTLHAALKTIAPSEAFSIAGIDPTRRGETLTIAEFTALAKAIESC GDGDEAQ >gi|316916189|gb|ADCN01000017.1| GENE 43 47330 - 48280 704 316 aa, chain + ## HITS:1 COG:MT1040 KEGG:ns NR:ns ## COG: MT1040 COG1947 # Protein_GI_number: 15840439 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 24 314 5 299 306 130 36.0 4e-30 MSPVISHPRSAAARHQSDELSPITITVDCPAKTNLTLEVGPAHDEWGGRHELDTIYCAIG VYDTVTATAKQPGAGFSLELEGAYLGDLASSRSDMRRNHAVLALFAMAQAAEREPDVALT ITKRIPVGAGLGGGSADAAATMLAVNRLWELNWPIERLRTIAATLGADMPFCLTGGLAYG TGFGERITDIAPGSRDELALIEQGFSGEVLVGAYQSQLSTPEVYHTFDIVGAAEGDRNHL QAAAISLHPRSGQAIDAATQAGASHAFVSGSGPSVVAFAADEAAAQHIIEVWRDTAVVDR IIRAKSPEHPNISVRQ >gi|316916189|gb|ADCN01000017.1| GENE 44 48327 - 48956 662 209 aa, chain + ## HITS:1 COG:no KEGG:BLD_1450 NR:ns ## KEGG: BLD_1450 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 209 1 209 209 387 99.0 1e-106 MTYQVDEREARKAYVRRRQTIVFSISGAVLAVVLVIALLFNFHVFGLGEVETPASQPNYG NAAPCAVKDSSGKAQYVSNASVGIRVMNGTSHGQFAKAVGEALANRGFSVQKIDNYSSTD VERTTIYFGKNAINQAYTLIGNFTDATMIMTAREDQLIDVVIGATFNDLQDTNSFPQSGK TITNIEGCKAADSMTKLPADTKHDAYTAQ >gi|316916189|gb|ADCN01000017.1| GENE 45 49041 - 50456 1734 471 aa, chain - ## HITS:1 COG:MT4026 KEGG:ns NR:ns ## COG: MT4026 COG0617 # Protein_GI_number: 15843539 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Mycobacterium tuberculosis CDC1551 # 11 467 27 474 480 464 53.0 1e-130 MDFEVWPEAIELGRLFAEQGYELALVGGPVRDLLLHRKSHDLDFCSSARPEQFEPILRRW GHDGFWDMGRKFGTLGAMRRRPDGTEVKVEVTTYRSDMYDPDSRKPEVNYGDTLEGDLSR RDFTVNAMALRVPDLQFVDPFGGASDLSKGVLRTPVDPRQSFDDDPLRMMRAVRFVAQLG FRIAPDAAEAITSMRDRIDIVSAERVRDELTKLLLSDRPRAGLEALVESGLADIVFPEIP ALQLQIDEHHRHKDVFEHTMIVLERAIALETGPDGPVPAPDLTLRLAAVMHDIGKPKTRR FEPGGKVSFHHHDAVGAKMTRKRLKALRFDHHLVEDVSELVNMHLRFHGYVDEPWTDSAV RRYVKDAGHLYERLNRLTRADATTQNKRKAMIFSQAMDEMEERVRELKKKEDFDAIRPDL DGNEIMELLGLEPGPMIGRAYKHMLEYRLDNGPVDHDVAVEELKRWYAEIQ >gi|316916189|gb|ADCN01000017.1| GENE 46 50543 - 51835 790 430 aa, chain + ## HITS:1 COG:ML2698 KEGG:ns NR:ns ## COG: ML2698 COG0494 # Protein_GI_number: 15828458 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium leprae # 283 417 60 197 251 114 46.0 3e-25 MITPADLARMLGQTPDSADSHTQDHLLYTSETPHHSADSGDSSDVGGTASHSTNQAVHQD EVDAVPTAQHSGVPGTPATPATPEPSESEISDAASDMPAPKPMMPTPATVFGMHATVTIA TTSGTIEGQADGIAGEAGAETIAEVEPIIATAQTSVTIVTNDPAATAHAAVDAAVAVAKA AAAHTTAIPTPRDVLMPPAARTAPAATPVTMPVSAPSAAPVRPATSAHPTPATVFGRHPS GDVASPEPAVPVEPVTPSGPTPAMMPQRRTSDGPTTFASLDAQELPVVREYSAGGLIFDD QNRVAIIARHSRSGHLEWCLPKGHIEKGETPQQTAVREVHEETGILGEVIDSIATIDYWF TGTTQRVHKLVHHFALKQTGGELTVEGDPDHEAEDAIWVRFEDLDGVLSYPNERKIAWLY ARKKNRQANE >gi|316916189|gb|ADCN01000017.1| GENE 47 51907 - 54102 1648 731 aa, chain + ## HITS:1 COG:no KEGG:BLD_1447 NR:ns ## KEGG: BLD_1447 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 731 3 733 733 1147 100.0 0 MLAAPLTVYANDTTDTTDSSDTTDATGNQTENQPKQSIAITQSTPIVTSKSGYRVTAVIS NTDSTATSSGTLHLTTNALFTFVSRTDIQNWAENNAPIPTPNELGSVDVPSIPAGGTATV TIEVNANQQTLASIGSWGPKPLMLSYIVGNQILADLPSFLTRSSDGLNTATTPAMNLTVA MPYTASGWQVDNKAISNRIAETTTSSTSTSSKSNSTDKADKSDNADASNAAKATDTQAIS LSEQDADTARSLGQTFAKHRSLQVIADPLYWRQSAVQPSIAGIMQPADFDITAYTALDDT AAYEKAGITTEQWNAKQAAAWYADGGDSETPSAYAWQGNNCWTLDALTAAREQGYDTVIA DASFDADQTEAVHTGTYVVHTPAGDVTVLKEQSTLGTLAKGQATSTDAQAESSDAGRLAR LIAQSAFYQMEQPYTSRYLLMTFSRTTEASWIDQVMSAFEQASWLNLTDLKTMAKADPYN VSDSVNPDKADDANTANTRSALRQLADSRHDIMRMATSILRNEIDSDEVSSLDPQALARQ DANDTASHSNDPTQWIGSLLALHDDMALRSMSGSPQPTATRKAMVKATKTLASDLLNGVR INPSESISVFSESAKMPITVSNDLPYAVSVQVNSLTDSMQIVTSRTADIDIPSHSDAQVT FTIRVSTSGSSTAHVSLTDREGNSFGNTQDTAITSVMRISDASGFIIIGFAVLLGIIGLW RQFHRKKDPDE >gi|316916189|gb|ADCN01000017.1| GENE 48 54099 - 55826 1499 575 aa, chain + ## HITS:1 COG:Cgl3028_1 KEGG:ns NR:ns ## COG: Cgl3028_1 COG0728 # Protein_GI_number: 19554278 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, putative virulence factor # Organism: Corynebacterium glutamicum # 3 404 78 467 640 131 28.0 3e-30 MSSSVGRNSLIMATGTAASRVTGQLRTILLAAAIGTTGLAANAYQAGSMIPQSVFTLVSG GIFNAVLVPQIVRTLKEKDAQERLNRLITLAIGILLAMTVVMAAASPLLARLYVGSDDHQ MIALTTSFTLWCMPQVFFYGLYTVLGQILAAKDHFLTYAWSSTGANIISCAGFTGFILLF SKANEQPLEFWTADKIALTAGTWTLGVAFQALILFLPLARIGFKYKPSFGLGGFGLRSMG PVALGSLGVVITSEICGIILTRIATSAPQRAHELTGASLFSVAGNATYQNAYTLFILPYS LIAVSVSTAMFPKISRSIAAANLDEARHDLVSALNNVGLLIMFFAAAMVVFPEPIIRALL PSVSMDETMLISYALIALSMGIPLGSAFLLIQRTFYAFEDGLHPFLSAVMQYGFTSIFMI IGMMVLPPEHWVLGIACSVTLGGLLALPLTLMMLRRKFEGNLGGREITRTYAKAIVAALA SGVVVWLIKRPVVALLGADIRPVGGHMSWWSALAICVVLTIVLAVVYVAVLWVVHTPELI SAYHSILARLHKTPASEDVAVTAQPEKSRRYVNQS >gi|316916189|gb|ADCN01000017.1| GENE 49 55909 - 57972 1533 687 aa, chain + ## HITS:1 COG:no KEGG:BLJ_2036 NR:ns ## KEGG: BLJ_2036 # Name: not_defined # Def: virulence factor MviN family protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 687 604 1290 1290 1208 96.0 0 MKPQLGDTILNRYTLVSSLREEPGIQAWKANDRVLAKDCQLFIITDRSAFAAIDKLAGRI AATRPDRVIPILKYRMESDVLLIVMPVDSGQCLTDYMVDTAKPLSYSAIRSIIGECADVL REVIADTPSGIVITTDTVRVTTSGVQIADAPCATMLADTSATDLRTDGPERYAIRQLAAL LYTLLTRTPSQATPTFNLRALPQDTPGEFRVICKRGLALSEPDDHTLPMAALVELDALLG NWKPLSELSDADIALPSVESDCSITKAILKPANETDIVPIPSTLINSSSLPELSITPSLP VQTAAVPAPHAMSPVPLPDGSSTADGNQSQSDARRLFDFNLSDAWEHENLSGEGTGDWYS EMNPAPIGGPGDNTRLTVPIVTGGIPDATVGETTSRIPVFDASGRAVAPGEESLRALEEE QARIAEVSAIPPSFTPKDVPDDEVDSKLPDEHLFGKLSTKVVAIIVALILVVAAAVWAVH AFRSSGDNPADASSNSSEGDWPDINADAVPFGGSENATNGGTTDDSSKSSDATQSESKDS ASDKSKKSETADSSSKKTKAKKSGDKDSSAVPQPSHENNTAFTISSANFLSNPGGQSGYA YYMHLDQPQDAYRMVITIRTSGGKGYIRANTTGDPTQGKQVAEFTFAEGGTTEVKFIKAV KTQDLLLWVPSDSLPQNQLYIEKVEVF >gi|316916189|gb|ADCN01000017.1| GENE 50 58092 - 59111 688 339 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 6 337 2 303 306 269 46 3e-71 MFHVKHNVIIIGSGPAGYTAAIYLGRAGLNPVMVTGALSPGGQLVNTTEVENFPGFPEGI LGPDLMDRMKEQAKRFGTTYIADDVSSIEACESDSVKPTYRVTLSDDSQLEASSLIIATG SSFRKLGVPGEQELSGHGVSYCATCDGFFFRNKPIVVVGGGDSAFEEALFLTRFGSSVTL IHRRDSFRASQIMVDRAKANPTITLMTNTVVTSITGTSSPTQNTGAPIAIPGLTLKRPAV APASVSSIAVRNVVTGEESTLDTNAVFVAIGHTPATDFAAGVVDRDDDGYVVVQGASTVT SAPGIFAAGDCVDRTYRQAISAAGMGCRAALDTQAYLTD >gi|316916189|gb|ADCN01000017.1| GENE 51 59418 - 60779 949 453 aa, chain - ## HITS:1 COG:ML2706 KEGG:ns NR:ns ## COG: ML2706 COG1475 # Protein_GI_number: 15828464 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium leprae # 156 441 59 330 335 238 48.0 2e-62 MASKSRLGKGLGALFPTLPGEEPVAEQPAMIAEDSSTPEATADITPAKKATAQQESKPAV PQTISSSKAVKKAAGKRASMPALDTITHPSDLFFGTEKPQTGKVAAPQQGGKSSASQTAH RTSVTVKDVSRETSLTASAAKTADTDKKDELKPVAGGYLAELKLSDIGPNAHQPRTIFDE DELNELSASIKEVGVLQPIVVRKRPASQIAAAKAAKHDETESSTNPFAGHLDSPYELIMG ERRWRASQLAGLETIPAIVKTTADDDMLRDALLENLHRVALNPLEEAAAYQQMIEEFGLT QVQLSKSVSKSRPQIANTLRLLNLPASVQKRVAAGVLSSGHARALLGLSDPEEMDKLASR IIAEGLSVRSTEEIVAMKIASGEQPKKPKTSKTNPWVGSAIQQSLENHFDTKVSIKGSTK HGRIEIVFSSPEDMDRILQLLVPSQGDADSKWV >gi|316916189|gb|ADCN01000017.1| GENE 52 60779 - 61801 525 340 aa, chain - ## HITS:1 COG:Cgl3035 KEGG:ns NR:ns ## COG: Cgl3035 COG1192 # Protein_GI_number: 19554285 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Corynebacterium glutamicum # 65 326 29 289 307 263 53.0 3e-70 MSIRMRTLELTSVQGGAMSTKDHQSEPIESASETLQRIFDGHGSVLGSQMADESSRYDVL KKTDFPKPQRTRRIAVANQKGGVGKTTSTVNTAAALANKGAQVLVIDMDPQGNASTALGV SHASGEPSVYDVIEGRSDLGDVITVCPDFPTLDVVPASIDLSGAELEVADLPNRNTLLKE ALDLYLRQSDKHYDYVFIDCPPSLGLLVINAMCAVTEMLIPIQAEYYALEGLGQLINTIG LVQEHFNPVLLVSTMLVTMFDRRTLLSREVYNEVKGHYPSIVLNTTIPRSVKISEAPSFS QSVIAYDPRGIGAISYGEAALEIAQRSQQVLDTIDARRNK >gi|316916189|gb|ADCN01000017.1| GENE 53 62001 - 62666 183 221 aa, chain - ## HITS:1 COG:Cgl3036 KEGG:ns NR:ns ## COG: Cgl3036 COG0357 # Protein_GI_number: 19554286 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Corynebacterium glutamicum # 9 220 5 207 209 147 38.0 2e-35 MTDQLQGSPVLAEVLGDALPKLERFHAKIAEEGEPRGLIGPRDVDIIWERHILNSAAIVP YVRNATNGIRFKTVADVGSGGGFPGLVAAACLPDHDFTLIEPMERRIEWLHECVGLMQLQ NVEIIRGRSDAVIQQVRKREIHPFAVVTCRAVAPMTKLSGWTLPLLKPSGQLIALKGRSA QAEIDKAGKEIAKFGGRRPRVVEAAVGPDLEPTHVVIVDKR >gi|316916189|gb|ADCN01000017.1| GENE 54 62818 - 63351 553 177 aa, chain - ## HITS:1 COG:MT4039 KEGG:ns NR:ns ## COG: MT4039 COG1847 # Protein_GI_number: 15843554 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein # Organism: Mycobacterium tuberculosis CDC1551 # 10 159 36 184 187 93 47.0 2e-19 MAQDDVKSIDQLNEEADIAADYLEGLLDIADYEGDIEMGVRNDRPTVQIVADDDTDIKHL IGRNGEVVDALQQLTRLAVQQKTGERSHLIVDVDGFLKRKRQHLRDIALDAIDAVKDSGE PYDLKPMNSFERKVVHDVVREEGLKSRSHGEEPHRYVTVYLKNRVEDTAEDDELDQE >gi|316916189|gb|ADCN01000017.1| GENE 55 63475 - 64482 1417 335 aa, chain - ## HITS:1 COG:lin2986 KEGG:ns NR:ns ## COG: lin2986 COG0706 # Protein_GI_number: 16802044 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Listeria innocua # 10 333 39 287 287 111 26.0 2e-24 MNSNEFLLDSGFWGFLYKILTPVEWLQTWIMKIVHDFFVMLGVSPIGVSWVLAIIILVLV VQACIFPLFYKQMKSMRKMQALAPKMQRIQNKYKGKTDQASREAMSRETMKLYQDNDVNP AGSCLPMLIQGPVFMSMFYTLSAIPYIANGKRDALGAFDVATAKQFTQTDVFGIVSVTDN FTSAAASGKAVIGIFVFLMCFCLWFMQYFSMKRNMAAASMNKQTETMQKAMLWLFPVMYI FSGVAMPFAVLVYWLTNNVCNLCRTLWQVYAFPTPGSPAAADKEKRDHRNENARRAKAGL PSLEEEALAKAKEEAERKATQGYQRQQPVRKRKKK >gi|316916189|gb|ADCN01000017.1| GENE 56 64793 - 65152 218 119 aa, chain - ## HITS:1 COG:no KEGG:BLJ_2044 NR:ns ## KEGG: BLJ_2044 # Name: not_defined # Def: ribonuclease P protein component # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 119 1 119 119 175 100.0 5e-43 MERLQSHRDFVTVLKRRRKAGGKDIVVHYLVPDDHHDDDDRTVHRRLGLAVSKSVGHAVT RNTVKRRFRVLARAHEDLLPAHCDIVLRAKPSAATASFASLDQQIAKAFATVAHKVAEA >gi|316916189|gb|ADCN01000017.1| GENE 57 65185 - 65319 227 44 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23465224|ref|NP_695827.1| 50S ribosomal protein L34 [Bifidobacterium longum NCC2705] # 1 44 1 44 44 92 100 8e-18 MKRTFQPNNRRRHMKHGFRLRMRTRSGRAVINRRRAKGRKTLSA >gi|316916189|gb|ADCN01000017.1| GENE 58 65638 - 67140 1621 500 aa, chain + ## HITS:1 COG:Cgl0001 KEGG:ns NR:ns ## COG: Cgl0001 COG0593 # Protein_GI_number: 19551251 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Corynebacterium glutamicum # 20 500 19 524 524 353 42.0 5e-97 MVNASGDPVIEAAHIWSDTLTVLKHSASLSPREKGWLEGVVPEGVFGSTIVLCVDNNDTL QAIQGDLNDSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAKPAQPYPSEISPTVAEFGK ESYGAKPAAAPREPMPATEPQFPVGQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTVAL AVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNEFIDALQ NPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKRIVIASDV APKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSKIPSDVLDLIAERFT ENIRELEGALTRVTAVASLSNQPVTRALAEQTLQDFFTTDVEIKPTDIISQVAKYFHLTF EDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTTVMHACTRISDRMQQK QEIYNYVMELTVRLKQSNTN >gi|316916189|gb|ADCN01000017.1| GENE 59 67268 - 67771 -258 167 aa, chain + ## HITS:1 COG:no KEGG:BL0639 NR:ns ## KEGG: BL0639 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 167 21 187 187 319 99.0 2e-86 MAPLCEGICRRRRLRGVSKGNTQKNHETRESILRTAFAGLGERDGKSAENGLQNRFSSTK NSLQHAVRKCENQKSYPHSCAQMWVNSADNSWITHYFVVENSCITATSMWKTQIRRTGCG KLAHLSTSHAEFVHNFQGLMNRCSCRAQPYLSTLSTGLIMAITYSVT >gi|316916189|gb|ADCN01000017.1| GENE 60 67876 - 69000 1468 374 aa, chain + ## HITS:1 COG:MT0002 KEGG:ns NR:ns ## COG: MT0002 COG0592 # Protein_GI_number: 15839374 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Mycobacterium tuberculosis CDC1551 # 9 372 21 400 402 241 36.0 2e-63 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG VDEAGSVLVQGKLLADITKSLRSEKTYLVTDGSTLTITSGKSKFTLQLMPDTEYPDLPVV PAMLGQVDAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGDKVVMTSTDRFRLARATFT WTPQNPDVDTTTLVRGSLLKDVARALDEHQNIRLDFDADSPTLLGFENAGRVSTSQLIDG EFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAERNAPIRMTFTGQEVALSAGSVDEA QANETLDIDMDGDDITVAFNPSYLKEGLSAVTEPFVRIKMTTPVKPVEFNGQQEADSDES MDYRYLLVPMRFNN >gi|316916189|gb|ADCN01000017.1| GENE 61 69028 - 70266 1019 412 aa, chain + ## HITS:1 COG:MT0003 KEGG:ns NR:ns ## COG: MT0003 COG1195 # Protein_GI_number: 15839375 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Mycobacterium tuberculosis CDC1551 # 1 379 1 385 385 202 34.0 7e-52 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRASSTLPL IERGQTTATIRANVADDAGQTTTYEASIHARGANRARINSGSSLYLRDIIGKIPSVSFTP EDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQPMD AVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSFDEV LMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIPAREFASNGEMWTMALA LKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARKQDQVLITVAAEGDVPDYE SAHRIDVATLAEPASVILPTLGNLSDSRENESLGKYDGKPAVDSASVERKVS >gi|316916189|gb|ADCN01000017.1| GENE 62 70263 - 70733 572 156 aa, chain + ## HITS:1 COG:ML0004 KEGG:ns NR:ns ## COG: ML0004 COG5512 # Protein_GI_number: 15826869 # Func_class: R General function prediction only # Function: Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives # Organism: Mycobacterium leprae # 27 151 47 174 189 67 33.0 9e-12 MNPPIARQLNLDETKLPAEIFERLSRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMT TIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFTDGVLTIRAESTVWATQLTYLI PQLTDTIRRNLKGLTITEIRVTGPAAGYTRKWARRR >gi|316916189|gb|ADCN01000017.1| GENE 63 70914 - 73004 3380 696 aa, chain + ## HITS:1 COG:Rv0005 KEGG:ns NR:ns ## COG: Rv0005 COG0187 # Protein_GI_number: 15607147 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Mycobacterium tuberculosis H37Rv # 33 695 47 713 714 745 55.0 0 MADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVPGEGVS GVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQH PTAPLKQGEPMTEGESTGTSVTFWADPKIFETTIYDFETLRSRFQQMAFLNKGLKISLTD ERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAE DLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILK DKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAH PAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVE GDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDI SKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHD FVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIE DAAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA >gi|316916189|gb|ADCN01000017.1| GENE 64 73072 - 75723 4540 883 aa, chain + ## HITS:1 COG:Cgl0012 KEGG:ns NR:ns ## COG: Cgl0012 COG0188 # Protein_GI_number: 19551262 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Corynebacterium glutamicum # 38 881 10 844 856 968 58.0 0 MADENNTGDEQFTPDGSMEPLSPQEADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSV IVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYGT LVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPN YDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVADGVHWALDHPDASREEL LENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEINGRMCLVVTELPY QVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQ LQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLK ALDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHE ELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENV VVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRV YRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVAKYLVLATRSGKVKKTP LAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQL RPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGL GIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDK GDTILSIARNEEKDEPEDGGDAAANGTAETAQSGENVNNADEA >gi|316916189|gb|ADCN01000017.1| GENE 65 75793 - 76359 567 188 aa, chain + ## HITS:1 COG:no KEGG:BLD_1430 NR:ns ## KEGG: BLD_1430 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 188 1 188 188 275 100.0 5e-73 MSENLEDNEPRIIPPAVGNTQNEHVEPLIGTEHAPRVARSVSSDPEESALPSSGAATPVR PAPRRSAPRARRMSLSLTRVDAWSVAKVTFMLSIAVAIIQVVASAIVWVLLDVVGVFSQI TQIVSSTGLDAGGFDLKNVLSLTTVVSGVTIFSIVEVVIFTLLATIAALIYNVVSSLVGG VHVTLGDD >gi|316916189|gb|ADCN01000017.1| GENE 66 76834 - 77238 510 134 aa, chain - ## HITS:1 COG:tra8_g2 KEGG:ns NR:ns ## COG: tra8_g2 COG2826 # Protein_GI_number: 16129365 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 1 129 250 376 383 147 58.0 4e-36 VVERTTRFTILLHLPDGHDAEHVQQAIIDKMQHLPKLLRNSLTWDQGAELALHKRIGASL DMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPRKTLGF MKPSEKIIELLDAA Prediction of potential genes in microbial genomes Time: Fri May 13 12:51:37 2011 Seq name: gi|316916161|gb|ADCN01000018.1| Bifidobacterium sp. 12_1_47BFAA cont1.18, whole genome shotgun sequence Length of sequence - 29933 bp Number of predicted genes - 30, with homology - 25 Number of transcription units - 20, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 501 - 537 1.2 2 2 Tu 1 . - CDS 729 - 806 65 ## + Prom 612 - 671 1.6 3 3 Op 1 . + CDS 805 - 1518 487 ## gi|239622835|ref|ZP_04665866.1| predicted protein 4 3 Op 2 . + CDS 1515 - 3101 2096 ## COG4677 Pectin methylesterase + Term 3222 - 3285 21.9 + Prom 3210 - 3269 3.8 5 4 Tu 1 . + CDS 3293 - 3457 63 ## + Term 3580 - 3629 5.8 - Term 3384 - 3435 15.7 6 5 Op 1 . - CDS 3498 - 4844 2296 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 7 5 Op 2 . - CDS 5163 - 5597 761 ## COG1522 Transcriptional regulators - Prom 5735 - 5794 2.7 + Prom 5700 - 5759 3.6 8 6 Tu 1 . + CDS 5803 - 7137 1354 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 9 7 Op 1 . + CDS 7447 - 7686 69 ## 10 7 Op 2 . + CDS 7649 - 7984 217 ## BLD_1423 hypothetical protein 11 7 Op 3 . + CDS 7935 - 8846 747 ## BLJ_0012 hypothetical protein - TRNA 9555 - 9627 89.3 # Ala TGC 0 0 - TRNA 9670 - 9743 93.3 # Ile GAT 0 0 - Term 9630 - 9656 1.0 12 8 Tu 1 . - CDS 9774 - 10109 98 ## BLD_1420 transposase 13 9 Tu 1 . - CDS 10501 - 12099 1275 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 12285 - 12344 4.8 + Prom 12369 - 12428 3.5 14 10 Tu 1 . + CDS 12508 - 13833 2087 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases + Term 13848 - 13897 4.8 15 11 Op 1 . + CDS 13961 - 14776 337 ## COG1451 Predicted metal-dependent hydrolase 16 11 Op 2 . + CDS 14863 - 15228 393 ## COG3265 Gluconate kinase 17 12 Tu 1 . - CDS 15487 - 16800 868 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 16862 - 16921 4.8 - Term 16980 - 17018 11.6 18 13 Op 1 . - CDS 17035 - 17514 802 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) 19 13 Op 2 . - CDS 17611 - 18954 1885 ## COG1253 Hemolysins and related proteins containing CBS domains 20 14 Tu 1 . - CDS 19213 - 19896 807 ## COG0288 Carbonic anhydrase - Prom 19923 - 19982 1.6 + Prom 20016 - 20075 1.6 21 15 Tu 1 2/0.400 + CDS 20102 - 20665 999 ## COG0450 Peroxiredoxin + Term 20790 - 20825 3.9 22 16 Tu 1 . + CDS 20833 - 22749 2638 ## COG0492 Thioredoxin reductase - Term 22787 - 22836 3.4 23 17 Tu 1 . - CDS 22866 - 24152 1467 ## COG0477 Permeases of the major facilitator superfamily 24 18 Op 1 . + CDS 24388 - 24471 78 ## 25 18 Op 2 . + CDS 24533 - 24646 58 ## 26 18 Op 3 . + CDS 24707 - 25705 1130 ## COG1609 Transcriptional regulators + Term 25854 - 25902 3.2 + Prom 25831 - 25890 5.7 27 19 Tu 1 . + CDS 25920 - 27569 467 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen + Term 27612 - 27660 3.2 - Term 27657 - 27724 19.0 28 20 Op 1 . - CDS 27736 - 27960 369 ## BLD_1398 phosphoenolpyruvate carboxylase 29 20 Op 2 . - CDS 28061 - 29452 655 ## BAD_0016 hypothetical protein 30 20 Op 3 . - CDS 29477 - 29905 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316916161|gb|ADCN01000018.1| GENE 1 2 - 383 471 127 aa, chain - ## HITS:1 COG:no KEGG:BLD_0058 NR:ns ## KEGG: BLD_0058 # Name: not_defined # Def: IS30 family transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 127 29 155 423 232 100.0 3e-60 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQIADRLRLGDSIRAIARLLGRDPGTVSREVERNRNPESGGYEP YRAQQKA >gi|316916161|gb|ADCN01000018.1| GENE 2 729 - 806 65 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVLSYVSMYNNESRFRNTRVGFAA >gi|316916161|gb|ADCN01000018.1| GENE 3 805 - 1518 487 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622835|ref|ZP_04665866.1| ## NR: gi|239622835|ref|ZP_04665866.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 237 1 237 237 305 100.0 1e-81 MKNTIIRAAGVLLAASMIFGGAAATASAAEATSPSTGTTSSTQAAESINREWVLNPANNT ELAALGTIQGGSQTFDGLTIDATANGAKFAPRANDTQINAGTIISIPVPAHTNTATITLA LSGGTTTITADAGEVSSDNTVIALPAAESARTVNVTFTAQTYLNGIALAEQQPEPEFPGT PTVAAKDTNWDFTETGIDRPAVQGLPTTTKASPSTLGRKAPSSTRVLPRQAAAAILR >gi|316916161|gb|ADCN01000018.1| GENE 4 1515 - 3101 2096 528 aa, chain + ## HITS:1 COG:CAC3373 KEGG:ns NR:ns ## COG: CAC3373 COG4677 # Protein_GI_number: 15896615 # Func_class: G Carbohydrate transport and metabolism # Function: Pectin methylesterase # Organism: Clostridium acetobutylicum # 85 332 3 250 321 88 26.0 4e-17 MNAGTILYIPVAQAEGGATVTVKGQLYGPTLKLDGTDITTGTAVTIATDSTRYVPLSVEG TGSLYLTGIAIDYAAGSPAATSHTVTVGPNGQYRTIQAALDANDSSETDRLVLKITPGDY REKITVTKPGVTFANADVTAKRAVTIRASYYSSNTFDADGKFVPQDEFDLGTNKCATVTI GAGATGFSAYGITFQNDYNVVDHTAAGEQTPAVALNTQADKVYLKNSRIIGRQDTLYVQG AGNRVYVDGGYIEGTVDFVFGDANAYFAGTELHMAAFAGKNNGYFTAANTKKSGVGLVFD RCNLTVAAAYDDDAKLSLGRPWQTFAQYTQVRKGDGSSYVTGVDLGTKNSAYTDTSSAVT YLDSTMSSKITKNRWNVWTSKNQSGKSVDVTFHDDVRFAEYASHDETGALLDPADYKNVV LGSMSALDEAQVQAKRAELLAALGFGSAAGQWVVPDGAWPFAYDPNYSTGTDVQPTQPGG NASPNADSAAKADTMPETGSAIIAVVVVAVPLLVAGLALVAVRRNRQQ >gi|316916161|gb|ADCN01000018.1| GENE 5 3293 - 3457 63 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLAWIDDHIQEFTRIVVRNAYVFGIALVARCTYSNALASSRGSKGITLLLSTA >gi|316916161|gb|ADCN01000018.1| GENE 6 3498 - 4844 2296 448 aa, chain - ## HITS:1 COG:CAC0737 KEGG:ns NR:ns ## COG: CAC0737 COG0334 # Protein_GI_number: 15894024 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Clostridium acetobutylicum # 5 446 2 442 443 568 64.0 1e-162 MLTDEYIKRVYDQVVARDGDQPEFLQAVREVFETLQPVVEKHPEYEKAGVLERIVEPERT IKFRVAWVDDEGKVQVNRGYRIQFNSAIGPYKGGLRFHPTVTESVVKFLGFEQILKNSLT TLPMGGGKGGSDFNPKGKSDAEVMRFCQAFMTELSRHIGQFTDVPAGDINVGGREIGYLF GQYKRIRDEYSGVLTGKGLEFGGSLARTEATGYGVCYYTQEALRVLRNDSFEGKTVVISG SGNVATYAAQKAEQLGAKVVTVSDSNGYIYDPNGINVEVVKQIKEVERGRIKEYAERVPG SEYHEGSKGVWTVKGDIALPCATQNEVDGESAQKLVDNGVTVVVEGANMPSTPEAIEVYQ KNGVLYGPAKAANAGGVAVSGLEMSQNSYRLSWTFEEVDAKLKSIMEEIVANSLAAAKEY GHEGDLMLGANAAGFVKVANAMVAQGVL >gi|316916161|gb|ADCN01000018.1| GENE 7 5163 - 5597 761 144 aa, chain - ## HITS:1 COG:MT3390 KEGG:ns NR:ns ## COG: MT3390 COG1522 # Protein_GI_number: 15842882 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 3 143 4 144 150 129 51.0 2e-30 MTAIDETDQRILTMLEADGRATLAQLAQATGLSVSAAQSRVQKLEKRGIIKGYKAIIDQE QRGLPISAFVNVTPLDYSAESSIPDKLNNIDGIVSCYSVAGAPSFVLVVRVASPTALEEL LNLIHRTVPVSTETTMILQTYFAH >gi|316916161|gb|ADCN01000018.1| GENE 8 5803 - 7137 1354 444 aa, chain + ## HITS:1 COG:PH1371 KEGG:ns NR:ns ## COG: PH1371 COG0436 # Protein_GI_number: 14591174 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Pyrococcus horikoshii # 40 424 10 386 389 261 40.0 2e-69 MQKFSNMPLSEVASAAVPAARRVAVPTAKPASLSAEALNIPRSGIRDVFDRVERVPDAIS LTVGEPSATAAPHIVAAACEAAQAGRTRYTNVLGVPEYRKAVADYSARVKGLTYDPETEI QAVDGATIGLFLALKAVVGTGDEVIIPSPFFTSYDAEVMLCGGRPVTVALRPEHGMRVNA ADIEAAITPRTRAVIINSPGNPTGAVTSAAELARIAEVCKQHNIWAISDEVYHPFVFGET FGETLGGEAAVAPSIAAVPGMKDRTIVVESLSKTYAMTGWRIGYLLAPEAVIEQTGKIAE LMHSSVNSLAQYAGVAALAGPQDHVAAMREEYRAKRQIVLDGLAGCPVLRLIEPQGAFYA FVDVRLTGLDSGEFADRLLDEEHVAVVPGEAFGEEGRGFVRLSYAGDAGELREGVARLRA FAERVWNPITGHHTATYHPMEVLA >gi|316916161|gb|ADCN01000018.1| GENE 9 7447 - 7686 69 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWSVCRQRTGCVCTSAGRIVSRTDCVDTGTCCASAFSTTIDTSRAGCPIGLRRARCPTAG TNCSLASFADSRSCRISGD >gi|316916161|gb|ADCN01000018.1| GENE 10 7649 - 7984 217 111 aa, chain + ## HITS:1 COG:no KEGG:BLD_1423 NR:ns ## KEGG: BLD_1423 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 111 1 111 111 182 100.0 3e-45 MPIPAPAAYQATDATAVLAPPRKSSKKLIAVLCALLATILVAALAFIVPNFTAVKAMLGF QPTNPLVVTFDAINSLSTLRSTKYELRTHSSTDDSLDARMSGMYSLGQNHQ >gi|316916161|gb|ADCN01000018.1| GENE 11 7935 - 8846 747 303 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0012 NR:ns ## KEGG: BLJ_0012 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 12 303 194 485 485 525 92.0 1e-147 MTRGCLACIRWGKTTNDSSASVTIKTDEQATTLAWHKGAFAGKNVWYDDDPYYIYYPADQ YEDDLRNGVGSDVADLILNVKDALVKNGAWDITGAERTFYDQLDKMNDDGYSNDIDRAKG TKTSAEVKAEASKFIQQYLGVELEDKNVRSQLFPNTSSAKSAGNTQLSYQIDVKALAQHF VNYWISHEAQYPHLKSWVIQQIEDTGVGDAEGEYRQALDNVRNWDFGTDEEPDMPTITVD LNYGRKRLMSSIAVSVSGKDEYGDSYKGSLSLTLSQQNAVSVDDPDLTDTVSKAKDNNEL DLS >gi|316916161|gb|ADCN01000018.1| GENE 12 9774 - 10109 98 111 aa, chain - ## HITS:1 COG:no KEGG:BLD_1420 NR:ns ## KEGG: BLD_1420 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 111 1 111 111 204 97.0 8e-52 MRLEADDGRPETSPPLRRGVQTADRAVVRERQAIPEDPPSWPDILRTIELGYSNARLEAS DNRIKVTIRMAYGFHHANSLIALVMLRCAGNHGASDNHDTPLLTYRRSMVL >gi|316916161|gb|ADCN01000018.1| GENE 13 10501 - 12099 1275 532 aa, chain - ## HITS:1 COG:STM2436 KEGG:ns NR:ns ## COG: STM2436 COG1167 # Protein_GI_number: 16765756 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 54 470 6 396 430 166 31.0 1e-40 MDTPSPSTASTTAHAVGYNDEPSITAAPLRSTDDLAVDAGQLSSLILTTEATATPQRIVE SVTSLTSSGILAEGQRMPTVRDLARLLRTSPATVSSAYHALARSGILRSRGRAGTFVLRQ SRTHRYDAGDLLAEAPATAPDRPIIDLSKGTPDLSLLPDIRPFLGKLGTHKAFVNSYDGP TILPMLEQILRRNWPYEPEAMTMASGAGDGLAHTMNAFVQPGDFVITEAPEYPLILDMIE AHGAMAFGVPMDGFGMLPDALDRALTMLESQRLAVPHGGHQVSMILLQPRAQNPTGASFS PQRIDALADVLLAHYPNGVGMPLIVEDDHSGDVANAYATSLAQRLPQHVVHIRSFSKSHG PDLRLAALSGPEDAVEAIIAQRRLGSGWVSRFLQEILYEMLADKEAFHTVTNARHIYATR QKTMHALLLRQSLDVHTGDGLNLWIPVRDEPAALRLLAEQGIRVAAGKPFLPSLRISADA TGADAGAGAGVDAHASRGIRVTIAQQGAVNEQVAAALAQAAAVTPKTSTNHS >gi|316916161|gb|ADCN01000018.1| GENE 14 12508 - 13833 2087 441 aa, chain + ## HITS:1 COG:Cgl2387 KEGG:ns NR:ns ## COG: Cgl2387 COG0160 # Protein_GI_number: 19553637 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Corynebacterium glutamicum # 15 424 28 432 456 346 45.0 5e-95 MGRDLSQDAEIWDDAYKLDRAHVFHSWHAQRNLDPTEVVTGHGVWLKYGDGREMLDFTSQ QVNVNIGYQHPKVIEGIKKQAELLCTVGPDYANLARGRAASLVARRAPEGFDKVFFTNAG ADANENAMRAARLFTGRDKILSSYRCYHGNTGAAISATGDWRRKPNDYSRGHVHFFTPYL YRSEFSATTQEEECERALAHLEHVIQFEGPDTIAAVLLESVPGTAGIIIPPKDYFKGVRE ITKKYSILMITDEVMAGFGRTGFWFALDDYDYTPDIISFAKGCNSGYVPAGGVIMSDPVA HRFDDIVFPGGLTYSGHPLAMGAIVATQEAMEEEHIVDNAYTIGKDVLGPQLTALYDKHP KIGEVRGKGVFWAVEMVADRTTKEPLDDATMKQIVAEGDKRGLILGVHNNRIHVTPPCVI SADEATQGVEILDQVLTAAGC >gi|316916161|gb|ADCN01000018.1| GENE 15 13961 - 14776 337 271 aa, chain + ## HITS:1 COG:XF0567 KEGG:ns NR:ns ## COG: XF0567 COG1451 # Protein_GI_number: 15837169 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Xylella fastidiosa 9a5c # 180 262 152 233 254 60 38.0 4e-09 MTCVPYRRRQSTAPKSGAPKSVRSAAAGQSLDIDGIHLHLTRKPIKNLYLRIKPPSGRVE ISAPMRMSESRIADFVKERHSWILAQQQRMAEAQRRSIMALNEGAGFENGGRGVAGASGH DGGVAGRPKTGDISRPGIGDAGPGQAGTNVQPYFDRSQIWTDERKRQAAAAINAALPQLL AKWGPVVGRQPTHITLRVMTSRWGSCTPRTGRIRLNLQLGLMEPQFLEYVLVHEMTHLWE SGHGAGFQRRMTAYLPGWKTLRRDLNRRVVL >gi|316916161|gb|ADCN01000018.1| GENE 16 14863 - 15228 393 121 aa, chain + ## HITS:1 COG:DR1910 KEGG:ns NR:ns ## COG: DR1910 COG3265 # Protein_GI_number: 15806909 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconate kinase # Organism: Deinococcus radiodurans # 1 117 38 156 172 111 50.0 4e-25 MAAGHPLTDEDRWPWLDTIAAWIDERVAAGEPAVVTCSALKKIYRDKLRRQGVVFVYMQG TFDEVMERLSHRQGHFMKPSMLQSQSDILEEPGDDEIHVNVHIGQADPEHEAMAVAGALG L >gi|316916161|gb|ADCN01000018.1| GENE 17 15487 - 16800 868 437 aa, chain - ## HITS:1 COG:FN1101 KEGG:ns NR:ns ## COG: FN1101 COG1373 # Protein_GI_number: 19704436 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 2 390 23 410 470 184 30.0 3e-46 MLRRKIETQLEAWRSAPKRTALLVTGARQIGKTYIIRHFAQQHYDHIAELNFIENPDLVA LFDRPRDAKNLLMRLELAVNTPLVPGKTLIFFDEVQRCKEMVTAIKFLVDDGRFDYALSG SLLGVELEDIRSVPVGYLTELDMYPLDFQEFCWSQHIGNDVFDMLAECFAKHQEVDEFIH QRLMELYSKYLVIGGMPAAVDSFVANGSVADVRTIQENIKREYRRDISQYARKEDRLHIR AIYDLVPSELNNPNKRFTFAKIEKNMRFQSVASDFDWLVNADVAVAAYNVDEPCTPLEMS KERNLFKLFYNDVGLLTGSFLKKTALDVLDGNPDINYGSIYENAVAQELRAHGFDLYYYN SKKLGELDFLIQDRNDHVLPIEVKSGKSYKRHRAMDNVLAHPEYHLNTGYVLGPCNVSVE GNVTYLPVYMAGMFHNE >gi|316916161|gb|ADCN01000018.1| GENE 18 17035 - 17514 802 159 aa, chain - ## HITS:1 COG:Cgl2943 KEGG:ns NR:ns ## COG: Cgl2943 COG0783 # Protein_GI_number: 19554193 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Corynebacterium glutamicum # 5 158 4 156 165 127 42.0 1e-29 MTLAFVVPGLDEAASEKAIAILQNRLSQEQEAALVLKHAHWNVTGPNFIAVHEMLDPEVE AVLAQADETAERIATLGGTPDGRADAIVRNRTWKSFDAEGRVGTEEYLKALIEYYDAFIA DDRKAIAELDELDVISSNIIQDHVQELEKFQWFMRSHLA >gi|316916161|gb|ADCN01000018.1| GENE 19 17611 - 18954 1885 447 aa, chain - ## HITS:1 COG:sll0260 KEGG:ns NR:ns ## COG: sll0260 COG1253 # Protein_GI_number: 16331101 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Synechocystis # 2 428 5 432 448 229 31.0 8e-60 MSLGLNILLIFVFLVIGSVFSGTELALVSLRGSQIEQMEQEDARGAKVAKIARDPNTFLS TVQIGVTLCGFLSASFGASSISPYLIPVVEGWGVPTGIAGGLVNIVLTLIISYCSIVISE MVPKRIAMQRTEQIARAVVPAIDVFATICRPIIWLIGKNTNGIVRVLGFDPQQTESEVSD DELRVLVSSNTNLSKDERTILDDVFDASETIVAEVMRPRADVVFIEADQPLAEAAAFVRD QPYSRYPVTGKDFDDVIGFVHVRDLLDVRDPKAKTVRDVVREGISLPGTSKLLPSLELLR KRGIHLAVVIDEYGGTDGIVTLEDMTEELVGDIRDEYDLPSEKGGERTTRTAFVNGVATI EASMTIEDFADLTGIELEDGPYETVAGYFLSKTGKMGAVGDVLHSDDGYNMVITKVDGRR IETIEVRKAGAPDHAPLPAESQSDDAN >gi|316916161|gb|ADCN01000018.1| GENE 20 19213 - 19896 807 227 aa, chain - ## HITS:1 COG:MT3694 KEGG:ns NR:ns ## COG: MT3694 COG0288 # Protein_GI_number: 15843201 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Mycobacterium tuberculosis CDC1551 # 14 221 8 193 207 149 40.0 3e-36 MAQSDFEQESTANATWSRMLQGNRRFAEGKPDHPWQDKETRQTLLDGQNPDAAVLSCSDS RVPPEIIFDQGLGDLFTVRTAGQLIDSAVIASLEYAVKKLHVSLICVLGHEHCGAIEAAE QELDDLMHTITSEADGSLEAADAMDDLDEHIAAAESIILRQTGMSVWQAREAELDAHEDI ERVHVAHIIETLVEQSPVIQQALAADKLMIVGARYQLDSGKVEVLSF >gi|316916161|gb|ADCN01000018.1| GENE 21 20102 - 20665 999 187 aa, chain + ## HITS:1 COG:FN1983 KEGG:ns NR:ns ## COG: FN1983 COG0450 # Protein_GI_number: 19705279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Fusobacterium nucleatum # 1 187 1 188 188 236 57.0 2e-62 MTLLQHELTDFKVNAFQNNEFHEVTKDDVLGHWSLFFFYPADFTFVCPTELEDLAENYAK FKEIGCEIYSVSCDTHFVHKAWHDANEKIAKIEYPMLADPTALLAKDLDTYNEADGMAER GDFIVSPEGKVVAYEVISSNVGRNAEELLRRVQASQFVHEHGDQVCPANWTPGEETIEPS LDLVGQL >gi|316916161|gb|ADCN01000018.1| GENE 22 20833 - 22749 2638 638 aa, chain + ## HITS:1 COG:FN1984_1 KEGG:ns NR:ns ## COG: FN1984_1 COG0492 # Protein_GI_number: 19705280 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Fusobacterium nucleatum # 7 320 4 316 332 300 50.0 8e-81 MTQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRT TGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKL GFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKYASKVTVLVREPD FTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFG VFVFAGYVPATDLVRGVVELDDHGYVVTHDYLRTSVPGVYAAGDLRVKNLRQVVTATADG AIAAVELERYAKQMSEKTGLVPPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAA AAASAAKKPGELFSAAVKQQLGVVFGRMTRPVTLALELDGTPLSAELQGFIGEMVALSGG KLNSVAVDAAGLITAVDGASVPTSLVVGEPLSVTLPDGTELPTYGSLDDSGRATFDVAGV LPLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQP LGDDLIERAKSITDPLNIMILVSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELK DQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA >gi|316916161|gb|ADCN01000018.1| GENE 23 22866 - 24152 1467 428 aa, chain - ## HITS:1 COG:BH2528 KEGG:ns NR:ns ## COG: BH2528 COG0477 # Protein_GI_number: 15615091 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus halodurans # 5 406 4 395 419 202 36.0 7e-52 MARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLSM SAAFAGPMVEKNIKKSALVSMVCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYL TPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLIGTVGLVSMFFILAAVYAVMM FVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHD VLRAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIF IMSIAVCLLQIFTNSIGNALLWAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHG LTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTGLFVVALISISLVKYLGDRNV TKAVEDRG >gi|316916161|gb|ADCN01000018.1| GENE 24 24388 - 24471 78 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLLWLISVVGSYELSHIENSYMTVSA >gi|316916161|gb|ADCN01000018.1| GENE 25 24533 - 24646 58 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSISWFDMFSFAASVLTTVTAAFESPGRASTEGLILG >gi|316916161|gb|ADCN01000018.1| GENE 26 24707 - 25705 1130 332 aa, chain + ## HITS:1 COG:SA0261 KEGG:ns NR:ns ## COG: SA0261 COG1609 # Protein_GI_number: 15925974 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 2 324 4 330 332 111 30.0 2e-24 MVTLKDVGELAGVTATTASAALRGKDYVKPETTQRVRDAARKLGYKINLSGRSLRSGRSD TITFLTSGLEGDYFSHLAMCVAEEVHKRDSHMLIELSRYLTDDNDLSYTFSDGIIAINAP RAVDILKRHPAVMLENYDTSLPIDTVNAPSDAGSRAAIEHLIARGCARIGIVGDNRDPNN PNIIPGSRDIRMRAAKETILAAGLPFDERRDFIKSSWSIDGGIEAGRGLAKKGKCKYDGL YCLNDGIALGILRGLADDGVSVPGDVRVIGFDGLSQSMYSVPTLTTVATDFKGMADTALT LLMRRIENLDDEFFPQTVNVGYKLIERESTAA >gi|316916161|gb|ADCN01000018.1| GENE 27 25920 - 27569 467 549 aa, chain + ## HITS:1 COG:DR2199 KEGG:ns NR:ns ## COG: DR2199 COG2865 # Protein_GI_number: 15807192 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Deinococcus radiodurans # 24 546 33 583 596 138 26.0 3e-32 MLPAKESLTVEFKSEQKRPQSHDEIVDNVVALANTEGGTLYLGIEDDGTVTGVCDEHRNI NGLAALIFNKTVPQLPARVALLYENEVPIVSIEVDNSQQIVSTSQGKTLQRRLKADGSPE VVPLFVSQFISRLSQQRFYDFSAQPAPEARLDDLNPDSRNKLRSHIRSANAQNSLLSFTD EDFDRALELVVDGPYGLQPSVAGLLTIGSVDAIHRSVPAASAVFQVMKGMSPKVNMDPFV LPLVDMFDRVGELMEPWNPSHEVMSGLIRVDLPDFDRGAFREAMINAFCHRDYARMGSVR FLVDEDGLTIANPGGFIEGVSEDNLLTAQPRSRNPQLALILKAAGYVERTGRGVDTIYAG SIAAGGSFPDYSQSSAEEVILFLRRVVPDEAFVTMIGDEERRRGAPLPVWSLIVLSLLRE HRRLTVVQLCDFSHLEHRRIVSAVENLVEAGLVEGVGSGSSRSYMLSARVYKRSEGLASY VRQRDIDATRRSGLVLEFAEKNDGVVTTADVMDLFGLSYISAYRLLKKLEDAGKLRREGN GPSSRYVLG >gi|316916161|gb|ADCN01000018.1| GENE 28 27736 - 27960 369 74 aa, chain - ## HITS:1 COG:no KEGG:BLD_1398 NR:ns ## KEGG: BLD_1398 # Name: ppc # Def: phosphoenolpyruvate carboxylase # Organism: B.longum_DJO10A # Pathway: Pyruvate metabolism [PATH:blj00620]; Metabolic pathways [PATH:blj01100] # 1 74 844 917 917 149 95.0 2e-35 MGDQWPLQHRHVLGQAIRIRSPYVDALSVTQVLALKSLRKKVDQEELSQSQQAGFIYLIL CTVSGVAAGLQNTG >gi|316916161|gb|ADCN01000018.1| GENE 29 28061 - 29452 655 463 aa, chain - ## HITS:1 COG:no KEGG:BAD_0016 NR:ns ## KEGG: BAD_0016 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 163 463 1 301 301 571 100.0 1e-161 MIVPEDQIGRARPSILFPKSTSLATLTQSLSSLLVLVQDEKIDNSIQTESASERHARRKA VEQFIHQQLDDIEPRIRHLEEMRHIATNEGKTIHTYLEDLHKKALHVEQQRQTLLNRDAH TISHISQLNQQYEHLEVLIRQRKVLISQYESDAARLDLQLQAMKHARTHAYPATCQFCHS PIHMSVPTEQDILIVSTEIEHIHRIQADVETDLAILVDKADEVQQELHLEKQQHRQNMHS LKSDIQPTAQHMQQDIEQIAHAEQLHAEYAELIALHARFNKALDDAGQATQNDEKYKPRE CFQSDFWYSMNNTIRSILQQCHFQGADTADFSRSSFDVEIAGYSKADEQGKGYCAFLNSV VMLAFHDYLNEQSKHTPGWLLIDTPLHGFDEGIRPLEDSSMKVGLFSYLAKQAVSQQIII IENTNHMAGIPLDDNINIVEFSKDKHNGRYGYLDGIYDVSDES >gi|316916161|gb|ADCN01000018.1| GENE 30 29477 - 29905 199 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 7e-15 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 12:52:31 2011 Seq name: gi|316916145|gb|ADCN01000019.1| Bifidobacterium sp. 12_1_47BFAA cont1.19, whole genome shotgun sequence Length of sequence - 24216 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 17, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 417 323 ## Blon_0449 integrase, catalytic region 2 1 Op 2 . - CDS 480 - 923 214 ## BAD_0017 phage-associated protein 3 1 Op 3 . - CDS 920 - 1339 210 ## BAD_0018 hypothetical protein 4 1 Op 4 . - CDS 1332 - 2417 120 ## BAD_0019 hypothetical protein - Prom 2479 - 2538 3.8 + Prom 2612 - 2671 2.9 5 2 Tu 1 . + CDS 2847 - 3416 156 ## gi|227547459|ref|ZP_03977508.1| conserved hypothetical protein + Prom 3461 - 3520 1.9 6 3 Tu 1 . + CDS 3741 - 6137 1549 ## COG3409 Putative peptidoglycan-binding domain-containing protein + Term 6147 - 6200 9.2 - Term 6053 - 6085 3.2 7 4 Tu 1 . - CDS 6237 - 6734 258 ## BAD_0021 hypothetical protein 8 5 Tu 1 . + CDS 6902 - 7735 69 ## BAD_0022 hypothetical protein 9 6 Tu 1 . - CDS 7806 - 8000 86 ## BLD_1399 hypothetical protein - Prom 8082 - 8141 3.2 10 7 Tu 1 . - CDS 8586 - 11339 4198 ## COG2352 Phosphoenolpyruvate carboxylase - Prom 11457 - 11516 1.8 + Prom 11326 - 11385 2.8 11 8 Tu 1 . + CDS 11625 - 13505 2241 ## COG2966 Uncharacterized conserved protein + Term 13616 - 13656 7.5 12 9 Tu 1 . + CDS 13738 - 15378 2274 ## COG0591 Na+/proline symporter + Term 15379 - 15432 -0.8 13 10 Tu 1 . - CDS 15708 - 16379 265 ## BLD_1395 hypothetical protein - Prom 16416 - 16475 3.1 14 11 Tu 1 . + CDS 16378 - 16596 86 ## 15 12 Tu 1 . + CDS 17086 - 18567 1701 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold + Term 18686 - 18733 11.2 - Term 18672 - 18723 8.5 16 13 Tu 1 . - CDS 18745 - 19836 1752 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 19869 - 19928 5.9 + Prom 19828 - 19887 5.9 17 14 Tu 1 . + CDS 19970 - 20359 452 ## BL0599 hypothetical protein + Term 20373 - 20428 12.1 - Term 20369 - 20410 9.6 18 15 Tu 1 . - CDS 20465 - 20881 359 ## BL0598 hypothetical protein - Prom 21046 - 21105 2.2 + Prom 21005 - 21064 2.0 19 16 Tu 1 . + CDS 21092 - 23539 4300 ## COG0058 Glucan phosphorylase + Term 23552 - 23586 1.0 20 17 Tu 1 . + CDS 23777 - 24215 221 ## BLD_0318 transposase Predicted protein(s) >gi|316916145|gb|ADCN01000019.1| GENE 1 3 - 417 323 138 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 138 1 138 358 242 92.0 4e-63 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCP >gi|316916145|gb|ADCN01000019.1| GENE 2 480 - 923 214 147 aa, chain - ## HITS:1 COG:no KEGG:BAD_0017 NR:ns ## KEGG: BAD_0017 # Name: not_defined # Def: phage-associated protein # Organism: B.adolescentis # Pathway: not_defined # 1 143 1 143 274 271 100.0 4e-72 MRNTWIRRISAIRKDGVESAINLTCGLNCIIGASNTGKTRIAKTVEFACGGKELPFTDKT AYEIAQVTFVTNGGEVSLSRSIHVQNTIHVKSSNPMIVPGSYSVSSRAGKSINTVLLALL GVESTRRIATNETYHTVAFTWNAPLSK >gi|316916145|gb|ADCN01000019.1| GENE 3 920 - 1339 210 139 aa, chain - ## HITS:1 COG:no KEGG:BAD_0018 NR:ns ## KEGG: BAD_0018 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 139 1 139 139 271 100.0 5e-72 MNNSLFNTTQETATRLTLCLPLLSRPSTIDEITAIDLIATYMKTFGFGQRNLHGDGPHAL AEYDARRKRIQAGLAQLVIVGAATVDSTCLLYRATPECFQYSEALHGDYAASYRQAVQLL IKNDYETIMNRITKENNQL >gi|316916145|gb|ADCN01000019.1| GENE 4 1332 - 2417 120 361 aa, chain - ## HITS:1 COG:no KEGG:BAD_0019 NR:ns ## KEGG: BAD_0019 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 226 48 273 303 481 100.0 1e-134 MGRRRMKTNGDEKETHLAETTATYALGVFCQLVNPYISGVDHHKKGFMKDFFDAVLEDDG LRNPLPQHHRNRKPGKTTITTGVWSGINDTDLTRFYNGRKKIPAWKAAEFYQRLDISKVE RLCCDISIDALADFQKELIKANIRVTDISELPSATGKWLLSILQANAGGRDILIDGISFQ PKFDIFENLPLASGRINNGKLHLGRSSVPWKAYPIPPDKPDDHLEKTYLTQMQAAYADHL HKPINCSDDLPQTCRPEYAKQREYFYDAEGMRRNLRDVIENGEQEFDALKVDLYDGICDT CASDYADGLLRMRATLSQAAGFPLSGSVIAQFPSMIKAAEKKGLCHMLVNDHMLEWVHEN E >gi|316916145|gb|ADCN01000019.1| GENE 5 2847 - 3416 156 189 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227547459|ref|ZP_03977508.1| ## NR: gi|227547459|ref|ZP_03977508.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 189 10 198 198 324 100.0 2e-87 MRAGNVSVTDIYNCSEVELRTMVERDRCLRAIRMGCSPRDIALRTPQTILQELWNAEERS AHAYYRSDRVSGVICSYEDLVGAGREPQGCSASSEDILLCAEDARERANCLQAIFAEIEK LPAGQRNIVRGVLVKGASQSDMARELGVSRAAVSKQLSTAVRKIRAAIRDESKETKNTTT SAVCERKEH >gi|316916145|gb|ADCN01000019.1| GENE 6 3741 - 6137 1549 798 aa, chain + ## HITS:1 COG:BS_ybfG KEGG:ns NR:ns ## COG: BS_ybfG COG3409 # Protein_GI_number: 16077289 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative peptidoglycan-binding domain-containing protein # Organism: Bacillus subtilis # 1 527 1 518 732 355 42.0 2e-97 MTDQMVLQTQQWLNKTYGNDPRFKKINPDGRTGWPTIYALTRALQIELGIQSTADNFGPS TQRLFKQRYPNGVRQQAVADKSTSNVYSIIQGALWCKGYSTGGNISQHFYDGTGSAIRKL KADMGIEGDSSVDVEIMGALLSMKQFVLLASYGGIDSVRRAQQFINKAYRPYTGIIPTDG LYGREMNTALIQVLQSLEGFSPSEATGNFGNGTRSRLKTITANNASSNESWVWLASTALA CNGIGGGPTFVWTSTFANIVKAFQERYAIAVTGSIDSTTWMSLLTSKGDPDRPCVACDTR FEITDARLATLKADGYEIVGRYLTEPGQSSLAPKDYFKAIRPGELERITRGGMRFFPIFQ EYSTKLEHFTPANGAAHAKTAREAAQRLGIPPTHIYFAVDFDATDDQVTSNILPYFRAVC SSLGGGYGVGIYASRNICSRVIGAGCASNAFVSDMSTGFSGNLGFPIPDGWVYDQFTEID DYKGQGWDLDRVAYSGKVSACASLLPAVPVPAPDPDPVSPETDPLLRWVAVTEQECRKAL AALGTQVAVYEDSIGQFILEWLRKPEYWSEGGSGTQAMWHAYTPEVSTPPDLDAARVVCA NVCEAQPSIKEKLPSTRDVAHMAATALGYLTWGIENNPAKYGLGDLGGWPLDLLQIWGAY RRDGKHADLAAWLYKHLGKDEGFGYDDVLADADAWLIASSMRKRSGSTVLSAAMRETFKQ SETHRIVRFYDERFASSADNVVSAYSTMADGLDALGLTNIGMSESILKKAAGTDKLPDKQ EAEVSARAFAAFIDQPRR >gi|316916145|gb|ADCN01000019.1| GENE 7 6237 - 6734 258 165 aa, chain - ## HITS:1 COG:no KEGG:BAD_0021 NR:ns ## KEGG: BAD_0021 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 165 47 211 211 319 100.0 2e-86 MDAERDTDGTTDAHEGDHTPADGAGTEGEGGKPDTRPGDRLATIRRTLWWIGLALQLPFA LTLIHFDTPYLILERILCAIPPRLASDPSSIVGIPALETEWCREFLALVLGAVCWVTAGV MRLVADSPSNHGKETLPVRIFAGIITIIVLMATGITGLFLGIAAF >gi|316916145|gb|ADCN01000019.1| GENE 8 6902 - 7735 69 277 aa, chain + ## HITS:1 COG:no KEGG:BAD_0022 NR:ns ## KEGG: BAD_0022 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 277 1 277 277 550 100.0 1e-155 MFRRPAATPEQECHKAPAALGTQVAVYEDSIGQLILQWLRKPTYWSEGSSGTQALWHAYT PEPVTPSELALSRQACGVACDAQPVIKGTLPNRDIAHMAATSLGYLTWGVTNDPMDYGLG DLGGWALDLLQIWGSYLANTPKEDLASWLHAHLGEQDARMGFSYSDVLADCDAWLLARSM QSNSSERSLSTAMRDMFAQSETNRIKRFYQSRFKGSADNLVIAFRKLVDGIDLGIFDNVS GSKKALLIASHADRLPSQAEAGILALSYAESLENPNR >gi|316916145|gb|ADCN01000019.1| GENE 9 7806 - 8000 86 64 aa, chain - ## HITS:1 COG:no KEGG:BLD_1399 NR:ns ## KEGG: BLD_1399 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 64 148 211 211 125 98.0 4e-28 MGVVCWIAALVIFGVRSYMRSVYPELRDHSSSASHVLVGIISFLVLVMVFPVLVITLLSA LMTL >gi|316916145|gb|ADCN01000019.1| GENE 10 8586 - 11339 4198 917 aa, chain - ## HITS:1 COG:all4861 KEGG:ns NR:ns ## COG: all4861 COG2352 # Protein_GI_number: 17232353 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Nostoc sp. PCC 7120 # 85 917 20 982 982 364 30.0 1e-100 MATPEEQITPADAAIVTTGTGRKGPEEHDLPESLKYDMDLCLEILRNVLGEYNPELLSTF DTVRHYAVETSAEHFAELKDPNPDQDGLKEAVNVIDNMTLHDAQLLARAFATYFHLANLS EENYRVSVLHERENNVPVDQAVDPINELTVAYHQLINETGPAKAKELLNQLEFHPVFTAH PTEARRKAVEGKIRRVSELLEEYKRLGGSDKKECLRRLYNEIDTLFRTSPIALKKPTPVE EADTILDIFDNTLFNTIPKVYRRFDDWVLGDKAGLVEPACPAFFHPGSWIGSDRDGNPNV TAKVSRAVARKFSDHVIAALEQATRTVGRNLTMEAETTPPSAELKNLWSHQKEMSERLTD KAALISTKEMHRAVMLVMADRLHYTIERDADLMYHSCDNFLADLKVVQRSLAAAGAKRSA YGPLQDLIWQTETFGFHMVEMEFRQHSVVHARALADIREHGLHGERGELQPMTHEVLDTF RALGAIQKRNGLKAARRYIISFTKSAQNIKDVYELNRLAFSHPEDVPTIDVIPLFEQLED LQNSVDVLEEMIKIPEVQARLKATGNKLEVMLGYSDSSKDAGPTSATLALHSAQERIAKW AESHDIDLTLFHGRGGAVGRGGGPANRAVLAQPVGSVKCRFKLTEQGEVIFARYGNPVLA IRHVESVAAATLLQSAPSVEKRNTEMTEKYADMAAQLDEAAHNRFLDLLNTDGFAPWFSI VTPLTEIGLLPIGSRPAKRGLGAKSLDDLRTIPWIFSWAQARINLAAWYGLGTACEKFGD LETMRQAYEEWPLFSTFIDNIEMSIAKTDERIARMYLALGDREDLNEKVLNEMELTRKWV LAIVGDKWPLQHRHVLGQAIRIRSPYVDALSVTQVLALKSLRKKVDKEELSQSQQAGFIY LILCTVSGVAAGLQNTG >gi|316916145|gb|ADCN01000019.1| GENE 11 11625 - 13505 2241 626 aa, chain + ## HITS:1 COG:YPO0484 KEGG:ns NR:ns ## COG: YPO0484 COG2966 # Protein_GI_number: 16120814 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 249 455 54 262 266 67 29.0 8e-11 MKDVSEQKKKSAPEAKGATAVRKFHTHSIPLDMEDIARDWEKPVVDAGIAAKASVIVRVG MLDLGAGTGSFRVREMMHRIAYPLGVHVRADVNLTDIEATCTDGRNRITEVVDLPSTGVN TERIWLLEHFADWFSVNLGKGSMYHVDSQLSDGVVKHLDERDASQYSADLAKRLRERAKV EAEAANGSVDEALDLASKTKVLVTSVAKSLDDDNEEAHRLLADSAEVTPVEDKAAEEKAY DDAEVFTGDSNESVESANAANGATAESPAASSTKRKNRVPKEYAEHFNERSDEEKAKGGI TVRQAHERLDLIERRKPLYKPWFSGLASALACAAFVFLLGGGPYDMIGAFVGAGLGQWMR RRLFAYHLNQFFVTFVCVAAAALACTGTLRLIGIFDPVALSHDTAYIGAMLFVIPGFPLI TGGLDMAKIDFPSGIQRVAYVLCIILMATLAGWAVAVMVHLHPEGFEPLGLDPWVNGLLR FVAAFVGVWGFSVLFNSPQRMCLTAALIGAITDTLRLELQDFNVAPEMATFIGAFLAGIL ASVWRSSVRRGWLPPHLGYPRICLTVPSIVIMVPGLYMYRAMWYLGSFQTMNALDWAFRA FMVIICLPIGLAMARVVTDKSWRYDI >gi|316916145|gb|ADCN01000019.1| GENE 12 13738 - 15378 2274 546 aa, chain + ## HITS:1 COG:MA0003 KEGG:ns NR:ns ## COG: MA0003 COG0591 # Protein_GI_number: 20088902 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Methanosarcina acetivorans str.C2A # 1 513 2 487 514 373 41.0 1e-103 MANDFWILLAMVIYFAAMLSIGFIYSKRSNSSSKEYFAGGRGVGPWLTALSAEASDMSGW LLMGLPGLAYFTGAADPMWTAVGLALGTYLNWKLVARRLRRYSVVTDDAITIPDFFAKRF HDKKGVISTIAAVIILVFFSVYVGSCFVTVGKLFATLFGFDYHVMMIIGAVVVFVYTVVG GYLSVVMTDFIQGMLMFFALAVVFIGTVASAGGVDNTVEFLRAIPGYLSGTQVAAPKLDP ATGQQLVEAGKAVFGAPSDYGIITIISMLAWGLGYFGMPQVLVRFLSIRSVEEVRKSRII ATSWCVISLGCAVCIGLVGRAMMPTELLTSTDAETIFIVLAQTLLPSFMCGVVVSGIFAA SMSSSSSYLIIGASAMGENIFRGLLHRKATDKQVMIVARVTLVVMFLFGILVAYDQNSSI FQVVSYAWAGLGASFGPLMLCSLYWRRANKAGAVAGMLSGTAAVLLWHNLVKPLGGVFAI YELLPAFIISLLFIVVVSLLTAKPNKRMLYEFDHYMDDPLPGTLPSGTVLVDEPMEAMES EVRSGK >gi|316916145|gb|ADCN01000019.1| GENE 13 15708 - 16379 265 223 aa, chain - ## HITS:1 COG:no KEGG:BLD_1395 NR:ns ## KEGG: BLD_1395 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 223 106 328 328 438 98.0 1e-122 MFSTYLELEELIVLADSMMRRDRRLCRTTIDALSLYLDEAEAQVRADKENGTNSYLFRGY NKCRRALLLARAGTDSSMETRTRLVLLKYGLNCPQVNYPIFVGNNTRPIYLDLAYPEFKI CIEYEGSHHAGQWLNDARRRQMIEDAGWKYIQVTKLDIGDEAGEEALARRVAERIQEVTG KTVQLTMRQTTQQISDVRKLRRIPLYKRLKFEPLLPIIPTAQE >gi|316916145|gb|ADCN01000019.1| GENE 14 16378 - 16596 86 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAHVQAGEVHVNCPSIMTVSSGKGHTTTLTPTMCRLSLACGTATLVVVARPLCLLDMRGT SIDKSSNAVVRA >gi|316916145|gb|ADCN01000019.1| GENE 15 17086 - 18567 1701 493 aa, chain + ## HITS:1 COG:DR2540 KEGG:ns NR:ns ## COG: DR2540 COG1574 # Protein_GI_number: 15807524 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Deinococcus radiodurans # 27 444 39 458 496 136 34.0 1e-31 MQTKAHTTSLEYATNAIASGSVSIPTSAAAPADETTIDADGLWVIPGLWDCHTHFTQWAK TLGRLDLINARSAAEAMDMLRRHLDERRAADTLDPDAFVVGMRFRHSLWADDEQPTLAAI DAVTGEQPVALSSADMHCGWVNSAAARRLGVHVDESGLVGELEWFNAYTAFDKAPGAAEE TDRLLREAEQDAASKGVVGIRDYEMAENIDTWINRFAAGINGLRVDAGVYPERLRAAIDA GWHTGKELPGSAGLGHVGAMKLISDGSLNTRSAYCSTPYSGIEPLTYGTLSYTPQQIEDY MRLATEHGFDIACHAIGDEANTIALNAVAATHAHGSIEHAQMLKPVDIPRFAELGLTASI QPQHAMDDRDVITRFWANPAGIPYPFRALHDAGTTLRMGSDAPVAPLDPWLAISAAVLGT ESSDREPFQPEQCLDVHTSLAASTATGRDRLASGDPADVVLLDADPYAADTPEAMRAMPQ HVVMTLLCGERTY >gi|316916145|gb|ADCN01000019.1| GENE 16 18745 - 19836 1752 363 aa, chain - ## HITS:1 COG:DR1093 KEGG:ns NR:ns ## COG: DR1093 COG0180 # Protein_GI_number: 15806113 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Deinococcus radiodurans # 41 359 25 346 351 219 42.0 6e-57 MTDEQQLTAAGNEMSASFLAAKKRSDETLAKLEAKPSSFTMLTGDRPTGRLHLGHYFGSI RERVAMQERGVNTNIIIADYQVITDRDTTEHIQDNVLNLVLDYMAAGIDPNKTMMFTHSA VPAENQLLLPFLSLVTEAELHRNPTVKSEMEASGHALTGLLLTYPVHQACDILFCKANVV PIGKDNLPHVEITRTIARRFNERYAKKNPVFPEPAAILSEAPEIPGLDGRKMSKSYGNSI MLGATAEETAKLIKKSPTDSERRITFDPVARPQVSALLTTAGLVTGRDPKDIAEEIGDSG AGALKAYVIESVNEFLAPHRERRAELAKDMDSIRDILHDGNKRANAIAEETLDQVREAMG MKY >gi|316916145|gb|ADCN01000019.1| GENE 17 19970 - 20359 452 129 aa, chain + ## HITS:1 COG:no KEGG:BL0599 NR:ns ## KEGG: BL0599 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 129 19 147 147 138 100.0 7e-32 MGRGRQKAKQQKIARKLKYLTTDTDYDELAKELSEQEPGMGSPDPFADIDDQYADKDVDS AADDHASGAAEAAPATQEDDLDEYAKWAAEAAAKATSGEFPASAPAAPKPAPRKPIPMPM PSALKPKKS >gi|316916145|gb|ADCN01000019.1| GENE 18 20465 - 20881 359 138 aa, chain - ## HITS:1 COG:no KEGG:BL0598 NR:ns ## KEGG: BL0598 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 138 40 177 177 265 100.0 3e-70 MGYMAVILEKDLKRGHDALVQWRAAARELADNTPHRLTVSPVLPRPVWAMAVRYSLFLLE RRAPGPGVEVRVAPWGAVKILDGPESDPHNLTPPDVIELDPEVWLRLACGITTWAEEKDA GHISAVGERDDLSDLLPL >gi|316916145|gb|ADCN01000019.1| GENE 19 21092 - 23539 4300 815 aa, chain + ## HITS:1 COG:sll1356 KEGG:ns NR:ns ## COG: sll1356 COG0058 # Protein_GI_number: 16330143 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Synechocystis # 1 814 14 829 849 729 47.0 0 MTEITAPKSPVTAEQFADEIREQLKYTQNVTTEQATPADVYVAASKAVRNHLADSWFKTQ ADTVNGNTKAVGYLSAEFLMGKQLRNALLNAGLTEQFDKAVEALGFKVQDVVDAEYEPGL GNGGLGRLAACFIDSLASLGVPAFGYGIQYKYGIFKQEFDKDGKQVETPDYWLANEEPWG HIDYNRDQKVSFGGKVVENADGTKTWQPAWSVRAVPVDYLVPGYKSGRVNTLRLWSAKSY DEFDLLAFNRSEYMEAVTPQVKAENISKILYPEDSTKVGKELRLEQQYFFVSASLHDAIR VFYPGQDKPDLTTFPNKIVFQLNDTHPVIGIPELMRILIDEYGYDWDTAWSITTKTFNYT CHTLLPEALEVWPASLIGELLPRHLEIIEKINAQFEDELKSKGVDKNTIKDMAIYTGDAV RMAYLATYGGSHVNGVAELHSQLLKDVTLKNFSDVYPDKFTNVTNGVTPRRFVKLANPRL SDLITEGLGTDKWLSDLEMLKGLEPLAKDDEFVKKFAAVKKANKVDFAAYAKREYGFELD PNTMFNTMVKRLHEYKRQSLKILSVISTYADIKSGKVKAEDVTPRTVFFGAKAAPGYYLA KMTIQLINNVSRVVNNDPDVKGKLAVYFPWNYNVRLAQHLIPATDLDEQISQAGKEASGT GNMKFALNGAMTVGTLDGANVEIRERVGAENFFLFGMTVDEVEKKYAEGYNPASYYEADP RLKHAIDMVADGTFSNGDRNAYSPLVADWLTKDWFMTLADFSAYMDIQSEIEALYADELE WNRKALLNVANSGYFSSDRSMEDYLERIWHTAPLA >gi|316916145|gb|ADCN01000019.1| GENE 20 23777 - 24215 221 146 aa, chain + ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 146 1 146 171 181 69.0 7e-45 MSRKRRGSYDVEYMRIVVGLIRDGIGAKSLARRLGVSKETTREWLLSYRIGGEAALMGER EGNRKYDYETKLAAVLDHLERGMSRPEVMERYGIASRTCLKQWCQDYRRGGPEALRPKPK GRPKGAKSKPKPAPTREQLLEEENAY Prediction of potential genes in microbial genomes Time: Fri May 13 12:53:42 2011 Seq name: gi|316916071|gb|ADCN01000020.1| Bifidobacterium sp. 12_1_47BFAA cont1.20, whole genome shotgun sequence Length of sequence - 95302 bp Number of predicted genes - 79, with homology - 75 Number of transcription units - 54, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 494 187 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 582 - 1106 915 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) + Term 1116 - 1152 8.6 - Term 1100 - 1141 8.7 3 2 Op 1 . - CDS 1246 - 2895 2256 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 4 2 Op 2 . - CDS 2926 - 3111 280 ## BL1748 long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase - Prom 3146 - 3205 1.9 - Term 3139 - 3182 2.4 5 3 Tu 1 . - CDS 3232 - 3738 702 ## COG1970 Large-conductance mechanosensitive channel - Prom 3764 - 3823 1.9 - Term 3747 - 3781 1.2 6 4 Tu 1 . - CDS 3905 - 4333 470 ## BLJ_1551 nucleoside 2-deoxyribosyltransferase - Prom 4374 - 4433 2.8 7 5 Tu 1 . - CDS 4499 - 4903 388 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - TRNA 5060 - 5132 83.0 # Arg CCT 0 0 8 6 Tu 1 . + CDS 5388 - 6500 961 ## BL1743 hypothetical protein 9 7 Tu 1 . - CDS 6516 - 7484 1272 ## COG0248 Exopolyphosphatase - Term 7610 - 7645 -0.8 10 8 Tu 1 . - CDS 7662 - 8885 1344 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 8942 - 9001 4.3 + Prom 8880 - 8939 2.3 11 9 Tu 1 . + CDS 8979 - 10034 1316 ## COG0673 Predicted dehydrogenases and related proteins + Term 10035 - 10076 11.3 - Term 9922 - 9961 -0.1 12 10 Tu 1 . - CDS 10065 - 10580 401 ## COG3727 DNA G:T-mismatch repair endonuclease 13 11 Tu 1 . + CDS 10654 - 11181 655 ## BL1738 hypothetical protein + Term 11253 - 11292 -1.0 14 12 Tu 1 . - CDS 11154 - 11642 440 ## BLD_1915 hypothetical protein - Prom 11725 - 11784 4.8 15 13 Tu 1 . - CDS 11830 - 16014 3053 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family 16 14 Tu 1 . + CDS 16092 - 17177 870 ## BLJ_1562 hypothetical protein + Prom 17220 - 17279 2.6 17 15 Tu 1 . + CDS 17411 - 18430 1384 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Term 18599 - 18639 6.6 - Term 18583 - 18631 12.5 18 16 Op 1 . - CDS 18644 - 19936 1448 ## COG0372 Citrate synthase - Term 20050 - 20102 9.4 19 16 Op 2 . - CDS 20210 - 20992 1253 ## COG0024 Methionine aminopeptidase - Term 21097 - 21139 7.0 20 17 Tu 1 . - CDS 21182 - 22162 1118 ## COG3247 Uncharacterized conserved protein - Prom 22199 - 22258 3.9 + Prom 22158 - 22217 4.5 21 18 Tu 1 . + CDS 22339 - 24513 3100 ## COG3590 Predicted metalloendopeptidase + Term 24523 - 24593 15.1 - Term 24517 - 24577 13.8 22 19 Tu 1 . - CDS 24596 - 25333 570 ## COG0629 Single-stranded DNA-binding protein - Prom 25496 - 25555 3.2 23 20 Tu 1 . + CDS 25512 - 25601 59 ## + Term 25631 - 25683 -0.0 - Term 25531 - 25572 10.3 24 21 Tu 1 . - CDS 25609 - 27423 2781 ## COG0442 Prolyl-tRNA synthetase 25 22 Tu 1 . + CDS 27594 - 27884 71 ## gi|46190320|ref|ZP_00206428.1| COG4584: Transposase and inactivated derivatives 26 23 Op 1 9/0.000 - CDS 27874 - 28659 903 ## COG1484 DNA replication protein 27 23 Op 2 . - CDS 28662 - 30143 1314 ## COG4584 Transposase and inactivated derivatives 28 24 Tu 1 . + CDS 30303 - 30905 386 ## COG2801 Transposase and inactivated derivatives - Term 30780 - 30809 -0.2 29 25 Tu 1 . - CDS 31023 - 33347 3066 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 33369 - 33428 2.8 30 26 Op 1 . - CDS 33481 - 33957 549 ## COG0756 dUTPase 31 26 Op 2 . - CDS 33957 - 34319 485 ## BL1437 hypothetical protein + Prom 34316 - 34375 3.2 32 27 Tu 1 . + CDS 34409 - 35500 724 ## BLD_0305 hypothetical protein 33 28 Tu 1 . - CDS 35510 - 36778 929 ## COG1524 Uncharacterized proteins of the AP superfamily - Prom 36830 - 36889 1.9 + Prom 36908 - 36967 1.7 34 29 Tu 1 . + CDS 37029 - 39758 3270 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 39801 - 39827 1.0 35 30 Tu 1 . + CDS 39903 - 40691 675 ## BL1433 hypothetical protein + Term 40838 - 40878 0.6 36 31 Op 1 . - CDS 40702 - 45435 2688 ## COG1201 Lhr-like helicases 37 31 Op 2 . - CDS 45451 - 46413 1128 ## COG0524 Sugar kinases, ribokinase family 38 31 Op 3 . - CDS 46487 - 47713 1131 ## BLD_0299 fucose permease - Prom 47756 - 47815 1.6 - Term 47798 - 47854 0.8 39 32 Op 1 . - CDS 47880 - 50198 3055 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 40 32 Op 2 . - CDS 50256 - 51680 2134 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 51706 - 51765 2.7 41 33 Tu 1 . - CDS 51883 - 52545 400 ## BLJ_1175 hypothetical protein - Prom 52653 - 52712 1.9 42 34 Op 1 . + CDS 52547 - 52747 129 ## 43 34 Op 2 . + CDS 52750 - 53832 1042 ## COG0142 Geranylgeranyl pyrophosphate synthase 44 34 Op 3 . + CDS 53976 - 56249 2269 ## COG0515 Serine/threonine protein kinase + Term 56258 - 56304 14.7 45 35 Tu 1 . - CDS 56301 - 57275 871 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 46 36 Tu 1 . + CDS 57066 - 57761 638 ## BL1423 hypothetical protein + Term 57819 - 57845 1.0 - Term 57807 - 57833 1.0 47 37 Op 1 . - CDS 57915 - 57995 76 ## 48 37 Op 2 . - CDS 58002 - 59048 1581 ## COG0547 Anthranilate phosphoribosyltransferase - Prom 59091 - 59150 2.6 + Prom 59088 - 59147 2.0 49 38 Tu 1 . + CDS 59168 - 59629 -85 ## gi|239621270|ref|ZP_04664301.1| transposase + Term 59760 - 59796 -0.2 - Term 60242 - 60275 6.1 50 39 Op 1 7/0.000 - CDS 60302 - 63196 4958 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 63231 - 63290 2.2 - Term 63281 - 63321 11.3 51 39 Op 2 . - CDS 63358 - 64020 1124 ## PROTEIN SUPPORTED gi|23465978|ref|NP_696581.1| hypothetical protein BL1418 - Prom 64091 - 64150 2.7 + Prom 64140 - 64199 5.7 52 40 Tu 1 . + CDS 64277 - 64504 90 ## - Term 64660 - 64692 0.6 53 41 Op 1 . - CDS 64897 - 65490 371 ## BL1416 RecX-like protein 54 41 Op 2 . - CDS 65493 - 66686 1867 ## COG0468 RecA/RadA recombinase - Prom 66826 - 66885 3.0 55 42 Tu 1 . - CDS 66987 - 67220 147 ## Blon_0948 hypothetical protein - Term 67243 - 67285 10.1 56 43 Op 1 . - CDS 67332 - 67901 664 ## BL1414 DNA binding protein 57 43 Op 2 6/0.000 - CDS 67907 - 68440 210 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 58 43 Op 3 . - CDS 68452 - 69102 283 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 59 44 Tu 1 . - CDS 69264 - 72137 3361 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 60 45 Tu 1 . + CDS 72169 - 73098 504 ## COG2184 Protein involved in cell division + Term 73207 - 73256 7.6 61 46 Op 1 . - CDS 73132 - 74118 1186 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 62 46 Op 2 . - CDS 74130 - 75584 572 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 63 47 Tu 1 . + CDS 75647 - 76456 848 ## COG2357 Uncharacterized protein conserved in bacteria + Term 76469 - 76495 1.0 - Term 76402 - 76440 2.3 64 48 Tu 1 . - CDS 76489 - 77505 1067 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 77531 - 77590 2.0 - Term 77557 - 77593 4.0 65 49 Tu 1 . - CDS 77645 - 78544 1572 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 78569 - 78628 2.3 66 50 Tu 1 . - CDS 78725 - 79570 1127 ## BL1404 hypothetical protein 67 51 Op 1 . + CDS 79905 - 81137 1297 ## BL1403 atypical histidine kinase sensor of two-component system 68 51 Op 2 . + CDS 81172 - 81897 769 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 69 51 Op 3 . + CDS 81937 - 82578 643 ## BL1401 hypothetical protein 70 51 Op 4 . + CDS 82668 - 84773 1893 ## COG1479 Uncharacterized conserved protein + Term 84797 - 84843 7.1 71 52 Op 1 . - CDS 84835 - 85326 296 ## BLD_0266 hypothetical nucleic acid-binding protein 72 52 Op 2 . - CDS 85326 - 85700 403 ## BLJ_1202 RelB antitoxin - Term 85733 - 85772 11.4 73 53 Op 1 . - CDS 85834 - 88533 4421 ## COG1048 Aconitase A 74 53 Op 2 . - CDS 88654 - 91167 2721 ## COG0474 Cation transport ATPase 75 53 Op 3 . - CDS 91258 - 91953 440 ## BL1395 hypothetical protein 76 53 Op 4 . - CDS 91965 - 93233 1272 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 77 53 Op 5 . - CDS 93223 - 93981 822 ## BL1393 hypothetical protein 78 53 Op 6 . - CDS 93997 - 94842 1126 ## Blon_0927 narrowly conserved hypothetical protein 79 54 Tu 1 . + CDS 94993 - 95302 229 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316916071|gb|ADCN01000020.1| GENE 1 3 - 494 187 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 139 181 312 317 76 38 4e-13 DTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDN GTEASLHVLVDEALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAI VGEINDTPMKLLGYKTPNEVWDEEMAKLQSKQADPKPAVALTS >gi|316916071|gb|ADCN01000020.1| GENE 2 582 - 1106 915 174 aa, chain + ## HITS:1 COG:BS_yrkL KEGG:ns NR:ns ## COG: BS_yrkL COG2249 # Protein_GI_number: 16079700 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus subtilis # 1 171 1 172 174 144 43.0 1e-34 MSTLILVFHPHLKDGSRVNARLLAELTAQGEDDIIVRDEYAEYPNFSVNADTEHELLEAA DRVILQFPFYWYSSPALLKEWEDEVITAGWAYAGAHALKGKELKLVVTTGSDAAKYRKDG EYSHTMEELLSPFEVVAYKVGMNYAEPFLVQGTATIGDAELDQAAADYVSAILD >gi|316916071|gb|ADCN01000020.1| GENE 3 1246 - 2895 2256 549 aa, chain - ## HITS:1 COG:ML0887 KEGG:ns NR:ns ## COG: ML0887 COG1022 # Protein_GI_number: 15827409 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium leprae # 6 542 59 596 600 441 42.0 1e-123 MVIDLAKGLIGLGVNKGDSVAIVSHTRWEWTALDMAIMSIGALTVPVYETNSASQVSWIF NDSKVTLAIAEDDGQRDKIESVRDEVPTLRNVFVIEAGGLNAIKTYGESVTDAEFWEYKE ASHGDDRATIVYTSGSTGTPKGVELTHRNFAFLVLSALQYMPRAGAWPNRRLLLFLPLSH VFARFMEFFSFGGTISLALSSNMKTMVKDFETFGPTLLLAVPRVYEKVYNAASQRAGTGF AGKMFMRAAENAREWSKAEQKGEQLPIAGRIAHAFYEQVVYKKIRTIFGPNADFAITGGA PMDSELSHFFNGIGMPVLEGYGMTETCGPVCVSLPEDNRIGTIGMPMCGITAGIAEDGEL VVKGPLVCKGYHNNPGVTAQQITDGWLHTGDLGDISEDGFISITGRKKDLIITAGGKNVS PGLLEASVMTSPVVNQCLVIGDKKPFVAALVTLDLADANKWLESQGAKPEPDLASLAKNA IVHAEVERAVNAANEGVSRAESIRKFEILPDEFTEANGMLTPSLKTRRAQIVEHYRELID NVIYVPLKK >gi|316916071|gb|ADCN01000020.1| GENE 4 2926 - 3111 280 61 aa, chain - ## HITS:1 COG:no KEGG:BL1748 NR:ns ## KEGG: BL1748 # Name: fadD4 # Def: long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase # Organism: B.longum # Pathway: Fatty acid metabolism [PATH:blo00071]; Metabolic pathways [PATH:blo01100] # 1 61 1 61 621 127 100.0 1e-28 MGSMTENIADKAINDTRIVKQFTNPVKEPIDSDINLFDLLDNRAKRDPEGAMIEYKGDDG T >gi|316916071|gb|ADCN01000020.1| GENE 5 3232 - 3738 702 168 aa, chain - ## HITS:1 COG:L153973 KEGG:ns NR:ns ## COG: L153973 COG1970 # Protein_GI_number: 15674083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Lactococcus lactis # 33 162 2 121 122 89 45.0 4e-18 MNSHNPMNIAADFAKATGGTARKVVALTDKGPLNGFKKFLSRGSMIDMAVGVVMGSAVTA VVNSIVDNLISPLIGMIGGVPDLSGLLTITFNNSTVSFGAILNALINFLLVGVAVYFCVI LPINKLRDLTAAQDEADAEEQGPSVEEQTLATLQEIRDELKKANDSAE >gi|316916071|gb|ADCN01000020.1| GENE 6 3905 - 4333 470 142 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1551 NR:ns ## KEGG: BLJ_1551 # Name: not_defined # Def: nucleoside 2-deoxyribosyltransferase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 142 1 142 142 275 100.0 2e-73 MSEDKQYDFYVAGPFFDPEQTASMERLEKILEDHGKVLFKPRFVSQIEEVGPEGCFADDI HGINAAKAVVANLMDEDPGTMFEIGYAHALGIPVYGYFENLTPMDRVNLMIAQAVELVFV GPDDVAKYLETGEHTEVDYIQF >gi|316916071|gb|ADCN01000020.1| GENE 7 4499 - 4903 388 134 aa, chain - ## HITS:1 COG:CAP0110 KEGG:ns NR:ns ## COG: CAP0110 COG0454 # Protein_GI_number: 15004813 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 1 132 1 132 137 179 60.0 1e-45 MAIEYTEEKRFTVEQVEALFKSVGWESAQWPERLFKALQHSDTVISAWDGGHLVGLVRVL DDTEMVAYMHWVLVDPAYHGQHIGSHLVELVKAKYRDYFLLEVMPEESKNAPFYQKHGFH LMDDGRAMQIVNRG >gi|316916071|gb|ADCN01000020.1| GENE 8 5388 - 6500 961 370 aa, chain + ## HITS:1 COG:no KEGG:BL1743 NR:ns ## KEGG: BL1743 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 370 1 370 370 632 99.0 1e-180 MAKARSTTTGASVRARAAAKPRSARATARPVSKSAVKPHKRHRLLGFLATMFALLALAGA AARALPADLQELPFAPIVVSATPWFTLLGLIALLLAIVSRRILAALIAIAAIACNGYWQY PFFYSTDPLPQAAQNAVAAASPNTSDAYARVMTFNVYKGQADPQAIVELVRDQRVEVLAL QETTEDFVKKLNEAGIEHYLPYAQVSSSDGVFGNGLWSATPLADPTDDDVNSSASFMPGG TVDMGGQQIRFVSVHTTAPVPGYWRQWKRSLDELGLMREHTDTRYIFMGDFNATYDHTPF RDFLGDRFVDAARESGHGFTFSWPTNRAAVPMFAGIDHVVLDQGMKAGQCKVVKVEGSDH AALLATVAVG >gi|316916071|gb|ADCN01000020.1| GENE 9 6516 - 7484 1272 322 aa, chain - ## HITS:1 COG:ML2434 KEGG:ns NR:ns ## COG: ML2434 COG0248 # Protein_GI_number: 15828315 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Mycobacterium leprae # 10 313 2 305 339 243 45.0 5e-64 MVNLRSHTTRLGVLDIGSNTIHMLIVDAAPGARPDPEASTKSTVRLMKYLKDDGSIKKSG IEAILEAVSQCMRLAEEYEITQLLVMATSALREAPNGNKVIHKIEELIGQGVTVLSGTDE ARLTFLAARRWYGWDAGRLLVLDIGGGSLEVAMGSDEEPTVALSAPAGAGRVTTEFLPSG MATPDELEDVRKNVRKILEPMVKVFPQSKHPNHAVGTSKTFRSLARLCGAVMRAPGREDS WIMTREQLEDWIPRLAAIAPEQRVALPGITPERTMQIVGGGVVADEIMKALNIQEVEICP WALREGAILRWLDQFGRTRLGF >gi|316916071|gb|ADCN01000020.1| GENE 10 7662 - 8885 1344 407 aa, chain - ## HITS:1 COG:PA4722 KEGG:ns NR:ns ## COG: PA4722 COG0436 # Protein_GI_number: 15599916 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Pseudomonas aeruginosa # 19 401 6 382 390 281 44.0 2e-75 MENEAAQQPQSPAASPVMSRRAREANPFRAMVFGEQADKMIAQGTSVIKLSLGEPDFGAP PAVRDAMREQYDGRALPYTAAMGLPELRQAIADFYRERHDLDIDPKRICVTAGGSAALLL ATALTVDPGDDVIVADPSYPCNRELVRSFEGRVIDVPTSAATRFHLTADLCSQYWTSKTK AVMITSPSNPTGTTIDFNVLDEVCKLAASRGAWRIVDETYLDLADREPDGTEVKSVLACD PDAIVCNSFSKFFGMTGWRLGWAILPDEPTVLEAVDDLATNYYLCAHTPTQHAALACFTP ESLAECEARRQELLARRRIVIDGLKRIGLPVEVEPNGAFYAYFDISRTGLDAWTFCERAL DEAHVALTPGRDFGAATADTHVRLSYAASREALTEGLERLGTFVESL >gi|316916071|gb|ADCN01000020.1| GENE 11 8979 - 10034 1316 351 aa, chain + ## HITS:1 COG:CAC1480 KEGG:ns NR:ns ## COG: CAC1480 COG0673 # Protein_GI_number: 15894759 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Clostridium acetobutylicum # 16 340 2 317 320 184 32.0 2e-46 MSRFNGKRAEFEASGEKINVAILGAGRIAHTMAGTLTQMAEDSLYSSWIHPYAVAARDIT RAQAFADQWHFDKAYGSYEELVADPDVDLVYIATPHSLHAEQAILCMKAGKNVLVEKSFT ANAGQAREALAVAEETGMLCTEAIWTRYMPSRKLINEVIESGEIGEVKAASANLCYPVSG KARMTDPACAGGALLDVGVYPLNFLDMAIGADHGRTLDHFDTSMVPAETGVDAQNSTTLY YSDSTMAVSTSSMLVSSDRGGYVWGTEGYLVVTNINNPESIDIYDNAHKPVRSIAVPPQL TGYEYEVADAANALLDGKIECEAMPHADTIRIMELMDAIRDRWGLKFPFES >gi|316916071|gb|ADCN01000020.1| GENE 12 10065 - 10580 401 171 aa, chain - ## HITS:1 COG:NMA0429 KEGG:ns NR:ns ## COG: NMA0429 COG3727 # Protein_GI_number: 15793434 # Func_class: L Replication, recombination and repair # Function: DNA G:T-mismatch repair endonuclease # Organism: Neisseria meningitidis Z2491 # 36 162 10 136 140 140 54.0 1e-33 MGDRSFRLSFSPQRHGSLECVNRKKQPVEKYERGTRSYTMSHIRGKDTKIEVLVRSYLFR KGLRFRKNDKRYPGHPDVVLPKYHAIVFVNGCFWHMHEGCSKHSMPKSNVEFWQAKLLRN HNRDIAQRAELEAAGWRVITVWECELTKAVRDERLVRLYEQIVEGDADSAE >gi|316916071|gb|ADCN01000020.1| GENE 13 10654 - 11181 655 175 aa, chain + ## HITS:1 COG:no KEGG:BL1738 NR:ns ## KEGG: BL1738 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 175 25 199 199 365 99.0 1e-100 MDDMTIRRATAADIPQIDELLRQVLEVHHAGRPDLFKGGVKKYTDEELKAILANDQTPVF VAVAPSANDGNDAEHNADSPATDQVLGYAFCVFQQHLNSNILTDIKTLYIDNLCVDERSR GHHVGSTLYRYVLDFARQSGCHNVTLNVWACNPKAQAFYERMGLTPYYIGMEQVL >gi|316916071|gb|ADCN01000020.1| GENE 14 11154 - 11642 440 162 aa, chain - ## HITS:1 COG:no KEGG:BLD_1915 NR:ns ## KEGG: BLD_1915 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 162 1 162 162 265 100.0 5e-70 MNAGIAFISRKSRKTDVAWRYAIAVVLVVCCIGLAYVEIVVAPWFINEVVSMFPETTLLK EPSMFWEWAILLAVQATLLCTAAKLVVPERLLAQAAGLLDMIRIVALIVVFSVTTTGNIT ICLMNFGTPGFVYGVALCSLAAIIAIIVLLKRRRYSTCSMPM >gi|316916071|gb|ADCN01000020.1| GENE 15 11830 - 16014 3053 1394 aa, chain - ## HITS:1 COG:FN1160 KEGG:ns NR:ns ## COG: FN1160 COG0553 # Protein_GI_number: 19704495 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Fusobacterium nucleatum # 724 1393 476 1086 1089 470 39.0 1e-132 MSKGYGVFGHVPDNADDDDLLPYEDDDSGVSWGHALRRRNPWKRGDDEDADYDDGRYDID DTDDTNGGRGLYTGKSGGVGGISGETGGILGSSGAAGSRDVTFGGTDSLSAADAVMPYRF RQGRSVWFDDEDEGHFAGSAKRAEAHAVPILALRNDVESSSSNAVLARARSIARKAATMV INPVYSENHRTGYAELDGILRGTTSPSSRYRTSVQFDLDTGEAVGGKCSCPAYGRGYGMC KHMIALAFIFCDDPQRFEGYRAGAARPSRTLIDYMEHADRQDAQAKIRRRNAVMRRFDAT QGKNGANARRTKSGYGSRAGTRGGGYQGDSETVGLGQVQLVPILSFIDGVWSVEFKIGSA SNGSSYVLKSIPQFVLAMANGDYADYGQKLAFIHTPDMLDDDSRPLLDVLDDAMAVRRAA EQQDRYYGHIAIDRHLTLSAPEVARLLSVREGRGVQLVLNTWFSGQPASVPVDGGEPDFL MRIARRDFNTYGPDAGYLLTGVPAVETVIDGGKNVWLLLASTNPAGAVSAMVAGSQRKSA AGCRFVRCPKRLIPLRGLLGDLFEPDGEGQVIAGDDIALFARTLLPQLVGAGLLEASEIP RELAELSPTECSLQFYLDRDEHGVQCEVKARYGDAIVPLLPDGPTVHAEGERSIPLSRGV IGRDFDAEHLAIDVVREFFTMPDQRKRVAAATHQTVNGFRTPAARKATKKFVSDAATIDR DDTTQIVRLFDEGLPALKEVGEVFTTPAFDRLIAPKPPSVKVGLSIKGNLVEISPLADEV PPDEVGALLSSYRRRQRFHQLKDGTLVKLSGANLSTLDRLASDLDLSEQQLNSGLIELPG GRAFLLDGELPDDGSDVVKDASFTEYIDDLKIIDPKSYEVPDSLKHILRPYQVEGFQWLN TLCDKGFGGILADEMGLGKSVQLIALLLSRYQRNTGEMGNGSLGPSLIVCPASLVYNWGA EFTKFAPSFNAVVVAGTKAERRTAIGRAFRADEPTVLITSYDLLRRDVDDYTANEQRFNV MALDEAQYIKNHTTKIAKAVKAVAADHRFALTGTPIENRLSELWSIFDFLMPGLLGSYKR FHERYELPISNARAADGSTAEGRAAAQVNPEAARVSRQLQSLVGVFIKRRLKSQVLTDLP DKLETTLTVRLAGEQRKLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPR LLYADAKDQSAKLAAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGS TPKKKRLELVDQFNADDTPAFLISLKAGNTGLNLTGASVVIHADPWWNAAAQDQATDRAH RIGQTEDVNVYQVVAKDTIEERILELQHTKSELARQFTDASLLADEAGTGASALTEAPAS IATLTKDDLLNLLG >gi|316916071|gb|ADCN01000020.1| GENE 16 16092 - 17177 870 361 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1562 NR:ns ## KEGG: BLJ_1562 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 361 1 361 361 752 99.0 0 MDADKPAQRKSYAGNTTLEIFEVLWRHSYFGHGLTVRQILDELARKHQLEDPSELPTEKT IRNQLKKLTATEFLGRHIGHLTESDLAGIECKNPQPGWYLDAFLSTAEMRLLLDSLTLSR ISLDTMDDLIGKIRELAGAAGQAVGYLDHVATYTHINGEFLSTIDQLNQAIEEGHGVTFQ YRDYGPDGTLIPHKSRTGAGRITYTADPYQMVYKNGRYYLICHLHGEDNLRIFVVNRIAN VSAKGRNGTVPLEKPAPADFDAVNFMRHRPYPVADAPIRIRMAVRDESMLNNVFEWFDDP QIKHSPDGTQFEVIVDAPERAVFWWALQYSWDGRVVILEPDSLKRKLYDAGRRMATAYAP E >gi|316916071|gb|ADCN01000020.1| GENE 17 17411 - 18430 1384 339 aa, chain + ## HITS:1 COG:Cgl1082 KEGG:ns NR:ns ## COG: Cgl1082 COG2171 # Protein_GI_number: 19552332 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Corynebacterium glutamicum # 6 339 3 297 297 282 49.0 6e-76 MSEERTAWGWGLASVDAAGTTLDVWYPELNLGEAPAEADRPNHNFGTLAHDEADARGIRR VPVFVVSQLDKPISNAADAYLKLHLMSMRMAKPNTLNLDGIFAQLANVVWTNYGPFAVED FTLRKADVERASTEAALAFASQAGLPAAAPAATVNVFGVDKFPRMIDYVVPTGVRLGDAD RVRLGAYLSSGTTVMHAGFVNFNAGTLGVSMVEGRVSQGVVVGDGSDIGGGASIMGTLSG GGKLRNSIGEHSLLGANAGIGISLGDNCTVEAGLYITAGTKITIWDKAKAAAGEPLEVVK GAELSGKDNILFIRNSVNGRIEARYRKVGIELNAKLHKN >gi|316916071|gb|ADCN01000020.1| GENE 18 18644 - 19936 1448 430 aa, chain - ## HITS:1 COG:MT0920 KEGG:ns NR:ns ## COG: MT0920 COG0372 # Protein_GI_number: 15840315 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 3 430 7 431 431 448 51.0 1e-125 MATAQLDVDSNKFNLPVVKASAGPDGIVVSKLRNDGWVTLDPGFLTTAQCESKITYIDGK HSILRYCGYPIEQLCENSDFLEVAWLLRHGELPSRAEYEQFCADINHKTMVGEDFRTFMG SFPRSAHPMSVLASAINALATFHPDTTDISDNDQLDEAAKIIMAKARTIVSYIFRRRRDE PMLYPDYARGYVDDFLRMCFAVPYEPFESDPLYVHALGRLLIIHADHEQNCSTSVVRIAG SAHANLYSAVAAGVNALSGPLHGGANEAVLRQLKAIRDSGKSVAEFVRDAKENGQKISGL GHRVYKSYDPRAAIARKYLEKIMEREDTQKLPSDERALFAVATELEDIALNDEYFVSRNL YPNVDFYTGLIYRAIGFDPAMFTTLFALGRIPGWIAQYREMLADPNTKIGRPRQVYTGPV ERDFVPMDER >gi|316916071|gb|ADCN01000020.1| GENE 19 20210 - 20992 1253 260 aa, chain - ## HITS:1 COG:aq_076 KEGG:ns NR:ns ## COG: aq_076 COG0024 # Protein_GI_number: 15605674 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Aquifex aeolicus # 2 256 3 257 258 192 39.0 8e-49 MIELKTPREIEEMKPAGRFVGGILKELQETTKVGTNLLEIDEFVHKKIVDRKGAESCYVD YAPDFGTGPFAHYICTSVNDAVLHGVPYDYSLKDGDLVSLDLAISVDGWVADSAVSFVVG KDPDPEDLRIIKCTEEALAAAIDVAKPGNRLGDISNTIGDVAREYGYPINLEFGGHGVGH IMHGDPHVPNDGRAHHGYKLREGLVIAIEPWFLKTTDEIFQDPKDGWTLRASDGSRGAHS EHTIAITENGPIVFTDRTNL >gi|316916071|gb|ADCN01000020.1| GENE 20 21182 - 22162 1118 326 aa, chain - ## HITS:1 COG:L100099 KEGG:ns NR:ns ## COG: L100099 COG3247 # Protein_GI_number: 15672859 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 177 323 30 178 178 86 32.0 7e-17 MSNPNEDQWNGQTGQPNQSQANQPNPAGQPGQPQYGAYDSNHGGQYPPQGAPGAQDTQNQ HAQNGQPQGEPNQNPYYGPYAYNPNYGPNGQPAWGPDGRRYQADGQSNSQADGQPNGPWG DQSQPGWQQTNWYVGNFSPFRLIEEWLPEKAKTKIRIIYGVVGVAAIALGAALLLVPNKT LALAALLLGVYFVISGVVRIVSALVEPGLPGGWRVLDVFVGILLTFGGVVVVRNYGMTGQ TLALLITLMVGFGWIMEGVLSLVESWRIPHSGWAIAYAIISIIAGFVVLMSPLSSAVFMI IFGGCAMVVMGITSVIRAFTFGKRRK >gi|316916071|gb|ADCN01000020.1| GENE 21 22339 - 24513 3100 724 aa, chain + ## HITS:1 COG:MT0208 KEGG:ns NR:ns ## COG: MT0208 COG3590 # Protein_GI_number: 15839578 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Mycobacterium tuberculosis CDC1551 # 5 724 2 662 663 553 44.0 1e-157 MTNETETLTSGIDPASFSSVIKPTNDLFRYVNGPWIDTYRLPDDRSRYGSFDKLAEDAEN QVRDILDADDCPAVKSEALYRSFLNTDAIEAAGLDPIRDELDLIDSAIDKAALTRVLGTI NPAGGPDLFGLAVYGDPGDPDRNIAHLEQAGLCLPDEAYYREDHYAPVREAYVAMVATQL VNAGYAPAAESNGGDELPSNTGDDESNAPATVPSEAALGMARHFLAVETKIAANHWDNVA TRDSVKTYNPTDYADLAATLKNFDLGSWIDAWQTAYDATEAAKAQPIDFKSVFARVIVHE PSFLTGLDAFWAEADLADLKLWARVHMILGFASSLSRDFDTTNFDFYGKVLSGAKKQRDR WKRAVSLVNGICGEDVGREYVRLHFPESSKRRMEELVANLIDAYRVSITNSDWLGEDTKA KALEKISKFTPKIGYTNHWRDYSALSVSADALPAENAKAANLYETGYQLAKVGKSVDKDE WLMNPQTVNAYYEPSMNVIVFPAAILQPPFFDPKAEDAANYGGIGAVIGHEIGHGFDDQG SQYDGDGKLNNWWTDEDRKNFEARTGALIAQYNSFVPLQLAEKYADEPDKAPHVNGALTI GENIGDLGGVNIALKAYAFALGKAAGKSDAKEDGSPAAIKALLDTAPEMDGFTGLQRFFL SYASIWRTKNRDELAEQYLQIDPHSPAEFRTNGIASNVDLFYDAFGVTEGDAMWLAPKDR VRIW >gi|316916071|gb|ADCN01000020.1| GENE 22 24596 - 25333 570 245 aa, chain - ## HITS:1 COG:Cgl2925 KEGG:ns NR:ns ## COG: Cgl2925 COG0629 # Protein_GI_number: 19554175 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Corynebacterium glutamicum # 1 122 1 123 225 59 35.0 5e-09 MANQQAAVTVTGFVAGDPTLGGTESFRVLTFRMGSTRSRLNPTTRQWEDYGTAWVGVKAF RALAVNAASSVRRGDRIIVVGSLITEQWTNEQGEPRSRTVLEATNIGHDLTFGTTSLIKP QRAGNGNGGNGGNGNGNANGAVEGMDGGNGQRASSPYVRPTQYGAGGAASGVGIDPYATS SESGPVEFGVTSDSGQSPSPSTESAAVADAVMSQPDADTNQPQPVAQQTYVDGFAESSDP SDSEF >gi|316916071|gb|ADCN01000020.1| GENE 23 25512 - 25601 59 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWISFGYPQQSAILRLGRMALDAINAEAE >gi|316916071|gb|ADCN01000020.1| GENE 24 25609 - 27423 2781 604 aa, chain - ## HITS:1 COG:Cgl1948 KEGG:ns NR:ns ## COG: Cgl1948 COG0442 # Protein_GI_number: 19553198 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 7 601 4 584 588 619 56.0 1e-177 MTSNTLRMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEA IIREEINGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFT LLVKDMYSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYY DERGAYERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEAL STPELPEIDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASDILKNVVITVK HPEDEEHDEPWREVIVVGVPGDRTVDMKRLEAQFAPAELEEATEEDLKQHPELVPGYIGP MVLGPQAEAAGVKNPVRYLIDAHVVKGSAWFTGADENEVDYYNLVYGRDFKADGVVEAVE VRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKALDLKVLDQNGKAVPVWMGCYGIGVS RVLACIAETHHDEAGLAWPSVIAPAAVHVVATGKDAVAFEGAEKLVAELEAKGLEVIYDD RKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTIELRDRNGENKVAVPAAEAADALAERF AALS >gi|316916071|gb|ADCN01000020.1| GENE 25 27594 - 27884 71 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|46190320|ref|ZP_00206428.1| ## NR: gi|46190320|ref|ZP_00206428.1| COG4584: Transposase and inactivated derivatives [Bifidobacterium longum DJO10A] # 49 96 237 284 284 90 89.0 3e-17 MAQPQYSPFQPQPEPEHPPINSQTQPSPYFSPQTQLAQQSVPQSAPQPLPPTAQGVFCQV GVGRFGVSFSPCERRVSGRFGVGRSCWLLVIALVIA >gi|316916071|gb|ADCN01000020.1| GENE 26 27874 - 28659 903 261 aa, chain - ## HITS:1 COG:YPO1901 KEGG:ns NR:ns ## COG: YPO1901 COG1484 # Protein_GI_number: 16122148 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Yersinia pestis # 27 254 10 244 260 150 36.0 2e-36 MGTHRPPVVMPDMKRRRASTGERIATIMTLARRLPLTRQVLADQLADATPSQMEFMESWM NAEIESRERSKRSRLLKAAGFPADKELGGYDWTPIRFPVDYGRGQITTLDFIAGHDDLVL FGPPGTGKTHLAIALGRNACRKGIPARYFTAAGLVMRLLRAQSDNRLDRELAAIGRTPLL VIDELGYVPIDEDGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTV HHGRMIRFEGESWRKTHALMQ >gi|316916071|gb|ADCN01000020.1| GENE 27 28662 - 30143 1314 493 aa, chain - ## HITS:1 COG:BH3998 KEGG:ns NR:ns ## COG: BH3998 COG4584 # Protein_GI_number: 15616560 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 14 451 11 450 499 194 29.0 4e-49 MTVPVSVQQRIRVLDAHGMSWRSIAKEVGVARDTVAKYAGREDCSPGPERSVSRPSKLDP FRATVDGWLQADRFMPRKQRHTAKRVYDRLVSEKGYEGSYSPVQRYVKRWREEHRLPSDG YLELKWHPGEAQVDFGMAQAVVGGDRVDVHCLVVTFPYSNMRYCVALPGENAECVCAGLR TVFEHIGAVPLTLVLDNATGAGHRIAWDKVTVVHVFELFVEHYRLETRFCNPNSGNEKGS VENAVGFLRRNIMVPMLNAESHGQLTRYMLERCDAMAKETHYRKGAPIGGLFAGEKMDMQ PLPAKPYDAIRWEVRKADKDGRVQIDGNYYLAGPSWRGWTLDVGLRAFDVTIRTQDGRTC ARLPRVYGDSPATVRNPATLLPALSRKTHAWTDSTIRDDFPDKLRIAIDRMDAKTRRTTF RVIAKASAASGFEAAVRAGEHLVEQGHAIDEASVTTMARRIAAGEKPYEQSVPDLTGYDV FMKPRQPWERKEA >gi|316916071|gb|ADCN01000020.1| GENE 28 30303 - 30905 386 200 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 14 198 32 215 216 158 44.0 5e-39 MNRHSRIRRPNPYRKYSSYRDETGARAENLLNRDFTADRPWVKLGTDVTEFRVADGKAYP APVYDMGSKEIVAWDVSRHPDMAQQRRLLAMLEEKLPEDADPIPHSDMGWQYRHRWWRDR LAGLNIRQSMSRKGNCIDNAATEQVFGHLKDEFHAGREFASYEQFKNELDAYIIHWNTKR RQIRLEGHTPEEFRNMSLTA >gi|316916071|gb|ADCN01000020.1| GENE 29 31023 - 33347 3066 774 aa, chain - ## HITS:1 COG:Rv2583c KEGG:ns NR:ns ## COG: Rv2583c COG0317 # Protein_GI_number: 15609720 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Mycobacterium tuberculosis H37Rv # 24 762 61 789 790 808 54.0 0 MAEIDGEQYAARKLGCEISADPLNPLDPIKKVCKSHHPDEDLSILDRAYRRAVIQHSAQR RKSGEPYIIHPLAVSQILADLGMGPIVVAAGLLHDTVEDTDYTLDQCRAEFGDTVAGLVD GVTKLSQLEVGDSAQAETIRKLVVAMSRDVRTLVVKLADRVHNARTWRYVKTTSAQKKAR ETLDVYAPLANRLGMNAIKTELEELSFKVLYPKIYNEIVVLVARRAGQRDVYLKQILAET NEDLDEQNIKAYVTGRPKDYFSIYQKMIVRGHDFANIYDLVGVRIIVDTIQDCYAALGAV HARWNPVPGRFKDYIAMPKLNMYQSLHTTVVGPGGKPVEIQIRTWDMHRRAEFGIAAHWK YKENGQAGRALSSPDKSDRKRDENNQELSEVDNLKWIQQLADWTSETPDSNEFLGSLKED LGSSEVYVFTPKGKIVSLPAHATPVDFAYAVHTEVGHRTMGARVNGRLVPLDTTLDNGDT VEILTSKSDTAGPSRDWLSFVKSPKARNKIRQWFSKERRTEAIEEGRDELTRAMRKRNLP VNTLLTPEALVGVADDLNFPNADAVFAAIGDGQVSTQNVISHLVKDAGADEVDEEVEQEV LPLKPMERKASSSSTGVSVKGVGDVWIKLARCCMPVPGDNIIGFITRNQGVSVHRTDCQN MIDLKNKQPERVVEVEWTSTKGLFMVKIQVEALDRRNLLSDVTRVLSDHGVNIISGTIAT GSDRVATSQFSFEMADPQHLNSLLAAVRKIDGVFDVYRITGAKESAEPRLRKMK >gi|316916071|gb|ADCN01000020.1| GENE 30 33481 - 33957 549 158 aa, chain - ## HITS:1 COG:Cgl1859 KEGG:ns NR:ns ## COG: Cgl1859 COG0756 # Protein_GI_number: 19553109 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Corynebacterium glutamicum # 20 155 12 146 149 135 55.0 4e-32 MAFDETYNEPESTEVLVKSLDPEHPAQLHYAHAGDAGADLITTVDVTLKPFERALVPTGV AIALPAGYVALVHPRSGLAAKQGVTVLNAPGTVDAGYRGEIKVPLINLDPKHTAVFHPGD RIAQLVIQRYVEARFIPAETLPGSDRAERGFGSTGVAS >gi|316916071|gb|ADCN01000020.1| GENE 31 33957 - 34319 485 120 aa, chain - ## HITS:1 COG:no KEGG:BL1437 NR:ns ## KEGG: BL1437 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 120 4 123 123 191 100.0 5e-48 MGEYGADRAIYIDLRTKDDERTMMAQDYDSPRNKDEDEESLQALGKSSQNASSDIDDDEN AIAEDYELPGADLSNEDSSVTVIPMQGDEFICSQCFLVKHRSQLAYTDEDGQPVCEECAA >gi|316916071|gb|ADCN01000020.1| GENE 32 34409 - 35500 724 363 aa, chain + ## HITS:1 COG:no KEGG:BLD_0305 NR:ns ## KEGG: BLD_0305 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 363 1 363 363 576 100.0 1e-163 MPDDRLEKARFVRVSKTGDLVFSLGGREMAVSVDDTLERAILEAKQVRSEMRQAPQPHQQ STLPISQIQSLIRAGADPARVAEKYHLSEMLVRRFSMAVETEKQYAIEQFLAVAAPKDSR VRTISELVERTLASAGIGMESVTWKSTRRGLEPWRIVAIFTSAGREIHAEWTWNMHDNSV MSLNNAARKLLGEQNPESATDSKLKPTIPELPGDSVRSARIERAVSAWAAPTPSIPAARP AAIRPSVTSTGSMPPVDLSTSISPATTQAHGTTAPSPVSSQTAGSVSPSAAGLQQSPATA PEQGSDNVSDKTIRSGPNAQLVATEQERAAESAATEHEAPAKPAKRKSGRSAVPSWDEIL FGD >gi|316916071|gb|ADCN01000020.1| GENE 33 35510 - 36778 929 422 aa, chain - ## HITS:1 COG:Ta1349 KEGG:ns NR:ns ## COG: Ta1349 COG1524 # Protein_GI_number: 16082335 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Thermoplasma acidophilum # 78 416 67 411 421 84 24.0 3e-16 MSVETPDMDELLRLVPTVGYGDDAPADRRGGALHLSAVLPALSAAIGHPAPTKVHADPKA CQRALGLPDAESAIVVLVDGLGYWNLAMRLGHAPYLRSLMNESANQRPIATCAPSTTVAA MAAFGTGTCPGLTAMAGYTQLEPASHKLIQLIQFKDALAPKPANPHIPVPPMVDPLDLQR EETVFEKLAAQEVRVTSSGLPKFSKSPLTEAALRGTDYQGNVTPRDRVLAAARASRTPGL TYLYIRDTDKVGHNYGWDSEHWVAAFEHIDAQLALLKRSAPKGTLIVIVADHGMVQTDMD QRIDIAVEPQLTRGVSLVGGEPRSLMLYAEPDERPEDIACRWRDCLQDRALVRTKDEAIA DGLFGPVCERVRPMLGDVVVQAAGAVTLVDSRTQGDKATHLPSVHGSQTALEMDIPCLID MA >gi|316916071|gb|ADCN01000020.1| GENE 34 37029 - 39758 3270 909 aa, chain + ## HITS:1 COG:SP1219 KEGG:ns NR:ns ## COG: SP1219 COG0188 # Protein_GI_number: 15901081 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Streptococcus pneumoniae TIGR4 # 19 858 4 792 822 491 36.0 1e-138 MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG NFGSLDDGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLV NGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDG IREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGI SGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLK EMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKS RLMVVFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVV TDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEA DVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERL RDDQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPATATLSLKGGVQADELIGMTES TDPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAP TTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIK LAKGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPL EMYPTKGRATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDMRRDGSGVD LASPIAFIA >gi|316916071|gb|ADCN01000020.1| GENE 35 39903 - 40691 675 262 aa, chain + ## HITS:1 COG:no KEGG:BL1433 NR:ns ## KEGG: BL1433 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 262 1 262 262 454 100.0 1e-126 MRLLVAVSNEPLAHAIHGALLAGRHEVSLASTGSIALAAVAKESFDAVILDESLLGISTE QLIESLRNARASVKILLLTSTPLSKTIGEGSRWRALPDEYAPIEETPYSSFSANSRANNS DAEAEQRSDNAASSAQANVRRPDAALSKPFSDGELLSYVGSLATDSPAMIIRGNLTLDTT NHKAYYASTHSAISLSRLEYSLLEALVKADGQFVNTSELVKLIGGPFFEQQGLLKNALYT LDKKLTRAGLIMTQRGSNYRIR >gi|316916071|gb|ADCN01000020.1| GENE 36 40702 - 45435 2688 1577 aa, chain - ## HITS:1 COG:Cgl0823 KEGG:ns NR:ns ## COG: Cgl0823 COG1201 # Protein_GI_number: 19552073 # Func_class: R General function prediction only # Function: Lhr-like helicases # Organism: Corynebacterium glutamicum # 42 1576 1 1453 1478 964 40.0 0 MYESLSLFSEPTKMWFEHAFGQPTEAQAQTWPAIHSGRNVLVIAPTGSGKTLAAFLSAID RLMTVPRTRRAGVRVLYISPLKALAADVAKNLEQPLEGIAAQCEAQGLPVPKIAVATRSG DTTAQERRRIASHPPDILVTTPESLYLLLTSKAGRILGTVDTVIVDEIHAVAGTKRGAHL AVSLERLENLVAESRKRDAIDADADEGGDAAVDAGRGDRHMQRIGLSATVNPPEKAARFL GGGQPVTIVNPGGRPAMDLRMIEPLENMRDLQSVNAKQRVGGVDAERSAPHISGVTPAMQ RLAERRGIVPVDDRDVSSTSGDDSDASDEFDSSALVGAAGDRTSGSIWPVVERSILDEIL AHRTTLVFVNSRGVAEKLTARLNDLYAQTRHGTNPDTVRDPGSPEGREGFSTHYDAVVGS TTMLVGSHEGDDVIAMAHHGSVSKDRRKMIEERLKRGELRCVVATSSLELGIDMGSVDLV IQVDTPLSVSSGLQRVGRADHQVGGVSHALFYPLTRQQIVTGAASLEAMIAGDIEPLAVP RNPLDILAQQTVAAAAMHDLNADDWYATVRRAAPFAELPRDMFDAVIGMMSGEYNSEEFS AFRPRLVWNRDNGLISARPGSQKVAVTSGGTIPDRGLYTVVLPEADAGKGQRRVGELDEE MVYESRVGDVITLGTSTWQIQEITRDRVVVTPAPGRTARLPFWHGEGAGRDYGFSRTIAR FTREIAAGLDVKRTEGRSAAEGPAVPTFIPTILTRLHHDGLDANAITNLARLLSEQQAAT GAVPSDQTLIVERTRDEDGGWRIVLLSPFGRRVHEPWSMAISRRLRQRYGFDGQVYAADD GIVIQLPDGDGHIPAQDLFLFDPEDLKADVERQVGESVLFAARFRECAARSLFMPRSDPG RRVPLWQQRLRAAQLLQSARMAKNFPLLLETARECLQDVYDMPALNEVMTGLQAGTITVK DVETESPSPFAENILFGFVGVVMYQYDQPQAERSAQLLSLDPHVLERLLGTTDMAQVLNP DVIREVEQELGEHTFWNELADDDVTGRVTRYAKTHGPFTADQLIADLHLDATDAVHTLDV LAAKGELLQGHFVDDDEQGQQWLHKDVFRRIRSRSLAKARKAVKPVESEAFQMFLIDRQG IGPVGGERYEGADGLMRVIEQLEGISLPTALWESAVFPARVRDYQPALLDKLLTSGDVVW VGSKTGGTSAMDPGEVAFYPADSILFSGVEHGTTSNASDATMPEAILTALDSGGAFHARQ LMDAAKRAWNETAEPDINPNTGEIIPQEWSEQQFKDALWSLVWQGKVTNSSFAPVRALTA GAASPRKSTTSRRRGRVAPIRRATTDMTLGGLWSAVIGQAEAEDTDQTERALALVETLLD RYGVIAQPVIDKENIPGGYSALYPVLNRMEEHGRLVRGMFVRGFGAAQFAERDTVDALRH PSEHRGQSVVALSVLDPANLSGSAIAWPDAPAGAGKPARRIGATVVLNAQGALLYAAAKA KHLTAFDQSVGHEAAVNDSDEQMRKAATELAYALKRNGTGSVTFSDINGEPLNARHPFAR ILHQSGFTPVPQGMRLY >gi|316916071|gb|ADCN01000020.1| GENE 37 45451 - 46413 1128 320 aa, chain - ## HITS:1 COG:PA1950 KEGG:ns NR:ns ## COG: PA1950 COG0524 # Protein_GI_number: 15597146 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 19 315 5 300 308 176 39.0 5e-44 MPEPVRERLRALKDAPGSVIVVGSMNADYTVTTKRLPKPGETVNGGAMKVLPGGKGANQA SAAARLGVNVQLLGAVGEDSNADFLLSKLDEAGVDTADILHVEGPSGATVITVSAEGENT IVYSPGSNAKASAGYVQSHRTTIAECAVLGLCLESPIVTVIAAAQTAHDAGVTVLLNDSP FMDELPHELVEATDILLVNQHEVAQLLGLPDDDVESLDWYEVAERFTDYGFDRAIVTLGA SGSVVIENGRWHRVSAAQVNAVDTTGCGDSFMGTVLAGLAAGHTLLQSAQIGSYVSAYAA TKLGAQSAYGTAEEVIAYFS >gi|316916071|gb|ADCN01000020.1| GENE 38 46487 - 47713 1131 408 aa, chain - ## HITS:1 COG:no KEGG:BLD_0299 NR:ns ## KEGG: BLD_0299 # Name: fucP3 # Def: fucose permease # Organism: B.longum_DJO10A # Pathway: not_defined # 1 408 1 408 408 699 99.0 0 MASLLLAVIYVAFISLGLPDSLLGSAWPTMSQDLNVPVAWAGGISAVISMFTIVSALLSD RMTLKFGAGKVTAVSVALTAAALAGFSVTSNYWVLLAIAIPYGLGAGGVDAALNNYVAIH YESRHMSWLHCMWGVGASVGPYIMGYALSQGQGWPWGYRYIAILQVMLTVILVLSLPLWK KRGAIAVGESTDDTASSDGNAERFGTAEGVSVAERKPLGVAGVLAIRGAKEILVMFFCYC AVESTAGLWASSYMVMHSGIDKITAASWASLFYVGITVGRALSGFLTMRFKDPVMIRLGQ VLVFAGILTMFVPLPHHLGVVVGLVVIGFGCAPIYPCVIHSTPAYFGEDKSQAIVGVQMA CAYVGSLLMPPLFGIIAQYVTISLYPWYLLVLLVLMVAMHERLRKLRG >gi|316916071|gb|ADCN01000020.1| GENE 39 47880 - 50198 3055 772 aa, chain - ## HITS:1 COG:Rv0005 KEGG:ns NR:ns ## COG: Rv0005 COG0187 # Protein_GI_number: 15607147 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Mycobacterium tuberculosis H37Rv # 3 764 48 708 714 497 40.0 1e-140 MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIV VTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA ATDTVEATDDTTVEPAQDQAPALDVSSNDAELFDDSAESQSDDAESPAEEDFSLTAGDQV VDGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGE LHAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDN ARKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDK QFGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQ PGNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAII QVVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVP PLHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTT MDPRTRMLRRIRMEDAAQASEIFSLLMGDDVPPRKQFIVDNADDFDRSKIDT >gi|316916071|gb|ADCN01000020.1| GENE 40 50256 - 51680 2134 474 aa, chain - ## HITS:1 COG:ML1022 KEGG:ns NR:ns ## COG: ML1022 COG0568 # Protein_GI_number: 15827492 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Mycobacterium leprae # 7 473 72 574 574 409 53.0 1e-114 MATKETTATKQTAESSEETETKKKASSTTTARKTSAKKSKSAEPSKKTTRKSAAKKTAKK AKDDELVKDEDTQVDDELDDDAEVNDDDLDVDDLDEDLDDVDEDDADDEDLDEDDADDDD VEDDEDEEEAKSKAPEQPKEKGAYVVSDTDDEEENIIPSGNPKRRVIAAGATADPVKDYL KQIGRVSLLNAEQEVDLSERIEAGLYAQHLLDTESEGMEFKRKRELKWAAADGKKAKDHL LEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDWKKGFKFSTYATWWIRQAI TRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPTPDELARELDMPVEKVQEVQK YGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAFSLLQEQFKQVLETLSPREAGVI KMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLRHPSRSQTLRDFLDQ >gi|316916071|gb|ADCN01000020.1| GENE 41 51883 - 52545 400 220 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1175 NR:ns ## KEGG: BLJ_1175 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 220 1 220 220 437 98.0 1e-121 MNNNTPHKPRKNRHAKRHAAEQTEPFVFDELKTRSQEFRNDRRLRGAQQANADWVAEPLD EWLSCLDAGNTDLGRETMAAFAVGMRETLSIRDALILSLVIDESRCPKSWLMEFAARPHL ARTRTRMGELLTCAFEDEGMMPDKERCHTGIGMLLDIAEASPVPYCIQPLAVIAYTLWWL GDPRAMVFALRCLLLDEDCSLAAMIFSAADRGVAPAWCSG >gi|316916071|gb|ADCN01000020.1| GENE 42 52547 - 52747 129 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSLTNGVQSIGVVVHAEPGSSRTEWVCPLWLKTPYDAGKNDHCGSSFKTLDFQRSCVLQ TLWISY >gi|316916071|gb|ADCN01000020.1| GENE 43 52750 - 53832 1042 360 aa, chain + ## HITS:1 COG:Cgl2124 KEGG:ns NR:ns ## COG: Cgl2124 COG0142 # Protein_GI_number: 19553374 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Corynebacterium glutamicum # 9 326 16 333 366 132 34.0 1e-30 MCTTANNREIIEPRIIQLVRELTAAPATDEVADALKPVMEQVVDQASSSSQGGKRLRALL ALDAFDILAGDVTPDRRDAMIDLACAIEVFQTAALVHDDIIDESDLRRGKPSAHHALEQA VHSGAIGRGLGLMLGDILATACIEITRRSASRLPNTDALNEAFLTMQREVEIGQVLDLAV EMTPLSNPEALANASLNVFRWKTASYTTIAPLLLALLAAGESPDQARHCALAVGRPLGLA FQLADDLLDVVGSSRNTGKPIGGDIRKGKRTVLLADALSAADTADKADLVAIFEADCRND NQVARTIELFTSTGALDRSRERIAALWGESRKAIAGLELNSEAQRRLTEACARFIPESLR >gi|316916071|gb|ADCN01000020.1| GENE 44 53976 - 56249 2269 757 aa, chain + ## HITS:1 COG:MT2232 KEGG:ns NR:ns ## COG: MT2232 COG0515 # Protein_GI_number: 15841666 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis CDC1551 # 7 320 12 318 399 217 39.0 7e-56 MSENEPAQMIEGRYRIVRNIAEGGMATVYEAVDERLGRTVAIKVMHTQLAKGPHREQFVE RFRREANSAASIANPHIVQVYDTGEFNGLDFLVMEYVHGVNLRHEMNAQGTFSVRETLRV VAETLDGLASAHRAGVVHRDIKPENILINDRGHVQITDFGLAKAASQATLSSTGMLLGTA AYLAPEMIENNQATAQGDLYSVGIMAWEMLTGKVPFDSDNPVTLVFKHVHEDVPSVATVC QGIDPSVAAFIAHLTARQVDARPADGAAAAEELNQLAAKLPLEAWQYRLHAEPIGGDHTD ATAAALVGNIAEQAPLTGVPAGAATFKPSVPAFLADDVASNTVDTGGAADVNPPAPPVAP TTALDSSTLADASAPHKTQIMAQSGSETQVLPQAGDAFTRAPALSDEPDVASNGTGPKKQ RSKKPLIIVLVIVLVLAAIGGTAGWWWFAGPGSYWSVPKPDDVTCDANASTECSLAGADW ATYESTLKALGIPYKTHKEYSDDVAEGKIISSSVNKTKAVVNSRISKRANQELTVVVSKG VRMTTIPKDILDANSANGKDPLNALKKAGFDNVKHDESKDEYSMDTPQGVALTISPDPGT TAKHNDEVTVTLSKGPMPVTMPNIVGKTQDEMQAALGELKLTANVTEQYDDKVEAGQVIS ASQEAGAQLKWGDSVDVVISKGPEMATIPSGLVGKQESAVTKTLEGLGFEVKTDKVLGGL FGTVRTVKSGDTDLSNGGKIRLRDANGNPTVITLTIV >gi|316916071|gb|ADCN01000020.1| GENE 45 56301 - 57275 871 324 aa, chain - ## HITS:1 COG:Cgl2136 KEGG:ns NR:ns ## COG: Cgl2136 COG0204 # Protein_GI_number: 19553386 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Corynebacterium glutamicum # 100 322 36 262 267 188 41.0 1e-47 MQVGLMLGFERGPRRIQIVHVMRLRCIGTIRGRSGGTGSRRLGRSIGILSVARRGGWPLS VGIAILVLSHNCHSNQATGQWLVRLREECQVLYWFFVKGLGPIAHHRLSPAVSGLNNVPR EGGAIIAANHLAVIDDALIPITCPRMVHFMGKAEYFEGKGLKGKFKKWWFTSVGVFPVDR SGGSKSLGALEHAREIIEDGHLFGIHIEGTRSPDGRLYKGHTGAARLALETGCPIVPTAI IGSDKLQPIGTSIPKKGKTKVLYGKPIEVAKKPADEITHDDLRSLTDRVSTAIQKMSGQE FVNEYAQKVKAELKAQQAAEEAEK >gi|316916071|gb|ADCN01000020.1| GENE 46 57066 - 57761 638 231 aa, chain + ## HITS:1 COG:no KEGG:BL1423 NR:ns ## KEGG: BL1423 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 231 11 240 240 370 97.0 1e-101 MTENQNSNADGERPTPTPGNGQDSDTSSKSSTPGAAGPATNGADTPQSHDMNDLDAAWAA FEAEHQADLHDVASSRQAKKFEKQAKKREKEALLSVDDLDIGSFTDDARPSRGGKKGKQP GPRDFTGSSWLDTDNVMDAYDDGGFTPPNPDLGPVKASTVLLTALLIIGLAGETVMIFVP GLNAIPLLGALLNILFGLGVILGLGGLVAKILNRKDRPGDQGGYYDDGARV >gi|316916071|gb|ADCN01000020.1| GENE 47 57915 - 57995 76 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGLLEYIYLSFIINYFELQESIDFNS >gi|316916071|gb|ADCN01000020.1| GENE 48 58002 - 59048 1581 348 aa, chain - ## HITS:1 COG:ML0883 KEGG:ns NR:ns ## COG: ML0883 COG0547 # Protein_GI_number: 15827406 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Mycobacterium leprae # 4 345 18 364 366 221 42.0 2e-57 MAEITWKSILTKLVGGDHLTAEESEWFVDDLMQGNANPAAVGAALAMQQQLGLTADEVRG AAKAMVSHAVPLNVSGGTTDIVGTGGDGFATVNLSTMGSVAAAAAGVKIVKHGNRAASSK CGAADVLEDLGLPLDLKPEAVGEVGDEVGITFAFARTFHPAMRFVGPIRAALGIPCVFNI LGPLTNPANPAHVAIGCANRKVSPIMAAVYASRGQSGLVYTSHEGMDELAPTGPVSVWEI RDGKVTETEFDPTVDLGLAKITVDQLKGGVPDVNANAFKDFLAGKDITSRTTALLNAASA IVADGNLVGNGTLAERFAEAYKLAEDAVDSGKAEALFNKWIETAKSKA >gi|316916071|gb|ADCN01000020.1| GENE 49 59168 - 59629 -85 153 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239621270|ref|ZP_04664301.1| ## NR: gi|239621270|ref|ZP_04664301.1| transposase [Bifidobacterium longum subsp. infantis CCUG 52486] # 28 116 1 89 94 97 100.0 3e-19 MDVGSSSSRWFRKREGRSRVFCFPTKEMNHEERLGKSPFTGLPNVKGTVAEDARITDSPP RSEPVLEIRVRPRAGMLRCSRCGRRRRGHDQGGGVRRRGRFRAVGRAGQPVHTRFRIGTR VADERREPEDRKRFSARRVARRRKTPPIGSPNG >gi|316916071|gb|ADCN01000020.1| GENE 50 60302 - 63196 4958 964 aa, chain - ## HITS:1 COG:ML0779 KEGG:ns NR:ns ## COG: ML0779 COG0653 # Protein_GI_number: 15827340 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Mycobacterium leprae # 4 872 1 876 940 963 58.0 0 MVDIVDKALRMGEGHQLKKLENVAKAVNALEDEISALSDEDLKAQTPKFKQEIENGKSLD EIMPEAFATVREVSKRTLGQRHFDVQLMGGAALHWGNIAEMKTGEGKTLVATLPTYLNAL EGKGVHVVTVNDYLASYQSELMGRIYRFLGMNVGCIITEQKPPERRKQYNADITYGTNNE FGFDYLRDNMAWEKADLVQRGHHYAIVDEVDSILIDEARTPLIISGPAEGDVTRWYRQFA KLVLKLTRDEDYDVDEKKKVVGILDPGITKVEDFLGIDNLYEPANTALIGYLNNAIKAKE LFLRDKDYVVTQGEVLIVDEHTGRILPGRRYNEGLHQAIEAKEGVEVKAENQTFATITLQ NYFRMYDKLAGMTGTAETEAAEFMNTYKLGVLPIKTNKPMIRKDQDDLIYRTKKEKLAAI VKDVAKRHAKGQPVLLGTASVESSEVVSTLLDVAKIPHQVLNAKQHEKEAAVVAVAGRKG AVTVATNMAGRGTDIMLGGNVEFLADAKLKSEGYSPEDTPEEYEKRWPGTLNEIKAQVKD EHEEVKELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLEDDLMRLFNTQLV AQVMAKGMEEGQPIEAKSVTKGVRTAQKAVESRNYEIRKNVLKYDDVMNKQRTVIYSERQ AVLKGEDIHKDILRFISDTVESYIKGANKGSEKPKDWDWEGLFKALNTVIPTKVDEDEVR KIVGGLKGAKAVEAVRDLIVEDARQQYGEMEETIGETGLRDLERRVVLAVLDRKWREHLY EMDYLKDGIGLRGMGQRDPLVEYQREGYQMYNSMIEAIKEETVQLLFHIDIKQVATTDEA VDEVEETAESADTIAVASGPDENGESVVEAAEGEVEEEDEDTDAKQAIAESAAASGAGES TLPVAGPAPISHAEGKVPVSKRPKSEELKTPWADGRTFPGTGKNAPCPCGSGRKYKMCHG QNEK >gi|316916071|gb|ADCN01000020.1| GENE 51 63358 - 64020 1124 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23465978|ref|NP_696581.1| hypothetical protein BL1418 [Bifidobacterium longum NCC2705] # 1 220 1 220 220 437 100 1e-121 MEIVVTGRHTQVKQRFRDVVETKMNRVTAIAPDAQRAQIVLTHEGNPRQADTAKRVEITV IAGRTVVRAEASSTDEFSALDMALDKLTLRLRRTRDRRKDHRRGYANPVPVDLGVIAPEP EPEVSEEEPNNSPQAAVASDLGPGESVEVQVGDTPIVIRRKLHIAEPMSIDEALYEMELI GHDFFLFVNKETGRPSVVYHRHGWSYGVFEIDTPENVKKA >gi|316916071|gb|ADCN01000020.1| GENE 52 64277 - 64504 90 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDRQRFLALSRTYQALTDLIRLHTTRHNTPDTPHPIFGASFTNRPTMPNYGENRITGQRH GLTAGRDAAFSAPYV >gi|316916071|gb|ADCN01000020.1| GENE 53 64897 - 65490 371 197 aa, chain - ## HITS:1 COG:no KEGG:BL1416 NR:ns ## KEGG: BL1416 # Name: not_defined # Def: RecX-like protein # Organism: B.longum # Pathway: not_defined # 1 197 1 197 197 329 100.0 3e-89 MISAEAFLRRNPVASQDMPIAEQHVQSKPSGRFSRRGRDAAVVEDPNDLDACREAALRLL DAAPRASGALRERLLAKGYGEAIVDEVIERLIRVQLIDDGAYAESAVRYCAGRMMGRRGT VMELARKGVDRKLAEQVCDEAEQNGIFEDAAWELGRQIARKTHGLDRRVRQRRLWSAGGR KGHSPETLRRVAAALLV >gi|316916071|gb|ADCN01000020.1| GENE 54 65493 - 66686 1867 397 aa, chain - ## HITS:1 COG:Cgl1910 KEGG:ns NR:ns ## COG: Cgl1910 COG0468 # Protein_GI_number: 19553160 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Corynebacterium glutamicum # 23 356 18 354 376 468 73.0 1e-131 MALETKPAKDPAAEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTG SLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAY ARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSH VGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGV VKKSGSWFTYEGDQLGQGREKVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDGEAA AAAAVSEAAAADVAKDSKAAAAPAAKTTRAKAGTAKA >gi|316916071|gb|ADCN01000020.1| GENE 55 66987 - 67220 147 77 aa, chain - ## HITS:1 COG:no KEGG:Blon_0948 NR:ns ## KEGG: Blon_0948 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 77 23 99 99 155 100.0 6e-37 MREREFWELLEEVFGRTYGRSLSRDQRMPKLANMTVVEALDAGEEPRVVWNVLCDQMEVP DSKRWGHDHNAPPMPAV >gi|316916071|gb|ADCN01000020.1| GENE 56 67332 - 67901 664 189 aa, chain - ## HITS:1 COG:no KEGG:BL1414 NR:ns ## KEGG: BL1414 # Name: not_defined # Def: DNA binding protein # Organism: B.longum # Pathway: not_defined # 1 189 1 189 189 276 100.0 4e-73 MGCRVVHSGNTEPTWEGAMAMETMTRVNEQMDVAAKKPMAVQPGVARMRELTPAQRRAVM FAQQQVLKAQAAKKAKDQRQAVRERMWDEDSPSYKPTAAAEPVVAEEEPREFSLRGAIGH VLRELRTRDRRTLREVSEKAGVSLGYLSEVERGQKEASSELLSSIADALGVSTSRMLRMV ADYLDSVEG >gi|316916071|gb|ADCN01000020.1| GENE 57 67907 - 68440 210 177 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 8 166 752 896 904 85 38 9e-16 MRELCDSLAAGILKICEANNTKIACAESLTGGLLADAFVRIPGASNVLLGSAVTYDINAK ASILHVDKALLDREGAVHPEVARQMAVGTARLYSQPEYGDRIIGLSTTGVAGPGPDGDKP AGLVYVGLRIPASLTPDHAEVLKAVELHLDGMREEIRRLTVFHVLQNLSLFTASFKE >gi|316916071|gb|ADCN01000020.1| GENE 58 68452 - 69102 283 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 4 206 467 662 904 113 34 3e-24 MDENTMDKQSSPKSSLFDGWNAPPNLVTYSRIVLVVFFLTLDILAGAWGENNLTMRWVAA VLFIIAASTDKIDGWMARKYNQVTEMGKLMDPIADKLLTCGAMIVCSAFGELGWWVTILF LIREIGITVMRFFVMERPGGKVIAAAWPGKLKTVFQCVGLSMLLLPFWSLGNGQATPFWM TAYYFLTYAIIYVALVLCLYSGAVYLYNTFVAPKRK >gi|316916071|gb|ADCN01000020.1| GENE 59 69264 - 72137 3361 957 aa, chain - ## HITS:1 COG:Cgl1922 KEGG:ns NR:ns ## COG: Cgl1922 COG1674 # Protein_GI_number: 19553172 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Corynebacterium glutamicum # 443 952 428 930 959 608 61.0 1e-173 MARTASSNSTKPRKSKDNGSTHDGETKVQPELDLEPEPLWKKILLAIPRAFGSGVRAVTG VGEYDPAYRRDGLCFLLLVLAVLFCASEWFRVSGPFGQLLHAIAAGVLGLMSVVLPVLLA AVAFRLMRNSGKGSNNPRVVTGWVLLMWSICSIIDVAIAADHTGFDITILQSAGGLFGFF LGSPLAWGLSNVFAIIIFVVVGLFSLLMITGTHVTDLPEDARKIAAKIQRKPYVPMGQET DGSASQFPNEVRVGDTTLAFADGVPSHDGDDDGSDNDQAGDARPSLFARLFGRKSKTEDD KTLDKYAADDPFDRAASQHGATAETPVVDPMTGEIIGARTIASSSYDGRPHLSSPAPAAD ADDGDASRTRVITSGQTVAMPGGGAVDDPWAPSAAQAGTVALAGAAGAMGAAGAYAGADA DGSGVGQGVPNTGGQPNATAGNDTDDDANRPYQLPDLNLLTKGQPHAMRTPANDRVIRAL TSTFEQFNVDAKVVGFLRGPSVTQYEVELGPGVKVEKVTNLQRNIAYAVASSDVRILSPI PGKSAIGIEIPNEDREIVHLGDVLRSDKAVGDPNPMLSGIGKDVEGHFVTADLTKMPHLL VAGATGSGKSSFINSMLTSIIMRATPEQVRLIMVDPKRVELSAYAGIPHLLTPIITDPKK AAQALEWVVKEMDARYSDLEFFGFRHVKDFNEAVRAGKVHAPAGSQRKVAPYPYILVVVD EMADLMMVAKNDVESSIQRITQLARAAGVHLVLATQRPSVDVVTGLIKANIPSRLAFATS SATDSRVILDTVGAETLIGQGDALFLPMGSAKPIRVQGSWVSESEIRKAVEFVRTQRKPK YREDIEQMAKEAEKKDSMEPDEEIGDDMDVLLQAAELVVTSQFGSTSMLQRKLRVGFAKA GRLMDLLESRGVVGPSEGSKAREVLVQPQDLPQVLAFIRGETSSLEATAPQQPELGE >gi|316916071|gb|ADCN01000020.1| GENE 60 72169 - 73098 504 309 aa, chain + ## HITS:1 COG:XF1657 KEGG:ns NR:ns ## COG: XF1657 COG2184 # Protein_GI_number: 15838258 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Xylella fastidiosa 9a5c # 125 284 40 189 203 80 33.0 3e-15 MVGDDTVTIWSIDESRQPIRRVRLSRFPAGARICLIMGCMTPAERASAVAFALKNCALEA MTPGEATMRAAAAYERGLKPVTHLIDVADEQTAMRLRAAADPAGKDRLAAGSLDDHATDR ADAVFARTVLLAERRWNPSGDLDELTAIHKGLFEGVFEDAGKLRTSNTTREVTNDRARAA NPEAFFPAGLIETGAHNIAMELADKRNLHALDRDVFVHAFASIYDELGYLHPFRGGNAMV LRIFGSRLAHDAGWDLDWGSVTREEYRSAKHSAYRGDTSALETMFDAILRPANPTRVFLI AGWNQGPAH >gi|316916071|gb|ADCN01000020.1| GENE 61 73132 - 74118 1186 328 aa, chain - ## HITS:1 COG:Cgl1899 KEGG:ns NR:ns ## COG: Cgl1899 COG0324 # Protein_GI_number: 19553149 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Corynebacterium glutamicum # 6 287 5 286 301 224 46.0 1e-58 MTQRVVSIVGPTASGKTGLGIAIARRLAEAGERAEIVNADAYQMYRGMDIGTAKPTAEEQ AAVPHHLIDIIDPEDTMSVARFQQLARETIADLQSRGIRPILVGGSGLYARAAIDDITFP GTDPDVRTRLEEREKTEGAGALFDELRAKDPEAAARMDPRNPRRTIRALEVIELTGKPYS ASLPRYRYVIPSVQIGLDLDRPDLDHRIDLRTKQMYDDGFIEEVERLRPHLGATAVRALG YQQIIDLLDGIWDVNDAFADIAQKTKRLARKQMGWFGRDPRIHWLQALNPKLVDNAMAII AHADAGDYDPIDARADEYTQHHLGDITA >gi|316916071|gb|ADCN01000020.1| GENE 62 74130 - 75584 572 484 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 34 414 7 382 451 224 35 1e-57 MNEDMMTEAERASIAADGTDGLLGKRGKGVFHIHTLGCQMNVHDSERIAGVLEANGYVPA TEDQINDNDLDLLVLNTCAVRENAAERMYGTIGRFNRVKLVRPNLQIAVGGCMAQLDRKK IADTAPWVSAVFGTKNIEDLPKLLDQNRATGKAQVQVTEQLRQFPSQLPAARASRISSWV AISVGCNNTCTFCIVPTTRGKEKDRRPGDILDEIRQCVADGAKEVTLLGQNVNSFGYGIG DRYAFSKLLRACGTIDGLERVRFTSPHPAAFTDDVIAAMAETPNIMHQLHFPLQSGSDRI LRAMRRSYRSAKFLDILGRIRAAMPDAQISTDIIVGFPGETEEDFQQTMDVVRQARFSSA FTFIYSPRPGTPAAAMEQIPRDVVQDRFDRLVALQEQITEENLATFEGRDVEVMITGKLG KKDTDTHRVTGREKTGVLVHIGVPEGEPVPEIGDFVTATVTHAGRHNLLADPDVAAGQTY SVRH >gi|316916071|gb|ADCN01000020.1| GENE 63 75647 - 76456 848 269 aa, chain + ## HITS:1 COG:SA2297 KEGG:ns NR:ns ## COG: SA2297 COG2357 # Protein_GI_number: 15928088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 29 255 3 228 230 204 44.0 1e-52 MSNYGFLERFPANVQIGWNPPSILVDVILDRHSRLKTSDLQARLKALDLPGGTFTPEQVV EFVDLMQVYEGAMYEISTKLEILDDEFQVRFSHDPIHHMERRLKSVSSIIGKLERKGLPI GVNSIKDNLFDVAGIRVICNYRDDVYSVSNYLSSQSDIQVLRVKDYIKNPKQNGYRSLHV IYAVPVFLSSGAHYTPVEVQFRTIAMDYWASLEHALRYKTDLPDNKLAEHSQTLLDCARS LQNIEVQMQNIHRDINGAPQVGEAPKTSD >gi|316916071|gb|ADCN01000020.1| GENE 64 76489 - 77505 1067 338 aa, chain - ## HITS:1 COG:CAC0076 KEGG:ns NR:ns ## COG: CAC0076 COG0697 # Protein_GI_number: 15893372 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 327 12 286 303 186 36.0 6e-47 MLSLLLTALIWGFAFVAQVQGMDSMSPMFFNAARFTLGALSLVPILLWMRGRGSADKGDT AGADVVGTEASVAVSTDAASNGASDVVTITGAKLNANKHDSAVARLLANPVVISVICGIV LFTASTLQQYGILYGKSAGRAGFLTAMYIVMVPLLAFVFLRRRIGMLVFVAVALSIAGFY LLCITDGFGSIGLADILLVFTAVLFAVHILVIDTLGGTVDAIKLSFGQFCTTAVLSWAGS LIEGSVDWAGAAHSWIPILYAGIGSVGIAYTLQVVGQQWVPPTRASLLMSLESFFSAVGG ALLLGEVMTPRGYLGCALIFLGTLLAQAPARLPKWPQR >gi|316916071|gb|ADCN01000020.1| GENE 65 77645 - 78544 1572 299 aa, chain - ## HITS:1 COG:ECs0864 KEGG:ns NR:ns ## COG: ECs0864 COG0670 # Protein_GI_number: 15830118 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli O157:H7 # 85 298 21 233 234 134 37.0 2e-31 MTFGQQPQNNGQYNPQYNTPDYNAAQQSGYGQQYAQSGYGQNYYAQPQGAPTYQYVPQGT GAGAGAATINTTMTYNYEEARRVSVTKVYGEMTIGILVTAVVAVLGQITGAYYSFLMATG MVGLIGLCVVQIALAVVLGMRVTKMKSATARVMFYVYAALMGFTLSSIFMVYDLGSIGVA LGATAAFFFALTMFGMTTKFNMLKAGPILMIGLIVLIISQIVLAFVQVDGMTKIVCAIGL ILFAGMAIYDAQSTRALLTEYEAQGPEMVKKISILCALNLYLDFVNMFLYILQLLGNRD >gi|316916071|gb|ADCN01000020.1| GENE 66 78725 - 79570 1127 281 aa, chain - ## HITS:1 COG:no KEGG:BL1404 NR:ns ## KEGG: BL1404 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 281 1 281 281 425 100.0 1e-117 MSNHNIAPQPVPSSPQQYQPQQPQPQPPQPQHLHTTICGIAAVVFGALGLVLSFIPIVNN IAAILGFIGVILAIIAIVGTFRGKKRGKVLSIVAAVLSVLAIVITLAMQSAASKAIDDSI KESKGIDTSQSSSSKSAGKSSDASKSKASEQKAQGEQDLEGDIEGAHVKIVSAVKSVNDY NGKPTALVTYEWTNNTSKNNSFATLAHPNVFQNGTELETAVYFDQPEGYDANSYLAQAQP GTAATVTLGYVLQDDSPITVDVTAFLSTDQDTKVTHTFTLQ >gi|316916071|gb|ADCN01000020.1| GENE 67 79905 - 81137 1297 410 aa, chain + ## HITS:1 COG:no KEGG:BL1403 NR:ns ## KEGG: BL1403 # Name: not_defined # Def: atypical histidine kinase sensor of two-component system # Organism: B.longum # Pathway: not_defined # 1 410 13 422 422 724 100.0 0 MVPLASFMCMAQTSFFAQNFAQDSAGYTLMVLCTLLAFPAGFLLLARSEYPEATFWIACA LVVVFPYDSLIALMAMTSLLARRSNRNTTIRATVGGTIVTLISQLRDALQQPKASIWHLI FAQPHTGGDSGSPMVMLVEEPTVIITATVASLVFVTIATLIGLHIRSRARLRTANAVASA ATTHAATLQTDLTNQQLADAIAAEAHDTLAHSLSLMALNASALKAEAAKLGDSPEAQSLA DKAEDIRRQSAGALDEAHSIIDMLRNPHQAWEQLAPSDDTSLTRESLDALIADTRNSGTS LNTWIDIQQLSVMDESIGKVAYRAIQEGLTNARRHAPGAPVSLEVSATPQAGVHIHISNP IATDATETQRAHGAGLPGLAARVHSVNGQCRYGMDDRHLFHVDVQLPWRS >gi|316916071|gb|ADCN01000020.1| GENE 68 81172 - 81897 769 241 aa, chain + ## HITS:1 COG:sll1708 KEGG:ns NR:ns ## COG: sll1708 COG2197 # Protein_GI_number: 16330324 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Synechocystis # 22 237 16 225 226 108 30.0 6e-24 MSGGKPERGGLTGSGTGLEPKPIRVSVIDDDPMICQAMSLILNDYSHGRIEVVSTSTDGE TCVRRAAEEKPDVVLMDIAMPGVDGIEATRLLRSLSPAPHVLILTSLSPSGTVERAVEAG AEGFVSKTDAADDIIRRIIGVCEGAPQFNTASQKQLIDDLSVTRPRSRRDEARALLDALP DREREAVMLAAEGYTNAEIASRMFISERTAKAHLSSAANKLDMGRVQMARLVERADLPAR L >gi|316916071|gb|ADCN01000020.1| GENE 69 81937 - 82578 643 213 aa, chain + ## HITS:1 COG:no KEGG:BL1401 NR:ns ## KEGG: BL1401 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 213 11 223 223 432 100.0 1e-120 MSEAIIRTLRRDDYPALIDLVRRTWYAEFDERTGLLAAEADWENCLARTTNAFVAELDGQ PVALIVGRVDALDHRSPLNSHRINSWNALARLVFAKGGIKAAGEILGILGIDKRLRAQAA SAGHDYAAEVVLFVLDPAARGHGLGRRMFETLMDAFRLAGVRDYFLFTDTTCDVGFYVHR GLTQVCEQSLPASVPGENPSSFYLYEGSVPEPA >gi|316916071|gb|ADCN01000020.1| GENE 70 82668 - 84773 1893 701 aa, chain + ## HITS:1 COG:HP1397 KEGG:ns NR:ns ## COG: HP1397 COG1479 # Protein_GI_number: 15646007 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori 26695 # 3 265 4 265 271 88 29.0 4e-17 MAISAKELPLGKVFTPDFRFTIPSFQRAYIWKTENILQLVSDLDDACKSPGTPYFLGSLI LVREGDNRYDVIDGQQRLVSLSIIIAVLRDLERDPDLMRQLDALLVEPGDKLRGIVTEPR LTLRERDAAFFREHVQEDNLESVFDMNDDDLATAAQRNIVANIRKTYDEISNWSDAGRQQ FAQYLVNEVTLVIVTTDDLDGAHRIFDVMNMRGLPLTSSDVFKARATAGLSTAELDVYAA RWDDIIDPIGDDPHDCEEFFAYLHLVLTHKPATDKLIEDFLADVLQPYIDKGTVPTFINQ VLAPYAMAWRIIARPSDTVLPAEVRSRLEGLDDYRSHEWKPVAMWALVNSYRGLGDADLS PFVVRASRIARTTATLESLGAHDERRLLEILTALEQVTGIRTLNRTGALERRGYANAAIR DLDKGYLVQRVNGLHVSDGDREGALVRLHGEMQGDGDLVRLLLIRANEQKAGMQLDRPRR FSALPIMPLDIERSKSFADWPQDQHDFWMYRLGNMALVQGPEDQLDRLSEYPARRDRMLL RADSRRFPLTNQLKDFADCTPALLEARQEEAVRLIVEYWGIRYDKDARDLTKQNVDELSK TSPRPSHSSRRVTIRQVIDAGLLVPGERLVWERPRKGERWFVTVTENGRLRLDDGSEYPT PTAAARAAAGGRRGGGLDVWKRTRNGQKLSDIWKQFRLQAQ >gi|316916071|gb|ADCN01000020.1| GENE 71 84835 - 85326 296 163 aa, chain - ## HITS:1 COG:no KEGG:BLD_0266 NR:ns ## KEGG: BLD_0266 # Name: not_defined # Def: hypothetical nucleic acid-binding protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 163 1 163 163 296 97.0 2e-79 MTDVSMQRILLDTNVLLDYLLHRDDHAKMAEAVMELGAKNNITLLCASLSLKDIAYLSSS AIRREFKSNESEVENFTRSFLSSRVPWHCIEQVKEMCDIVAVDESTCDKAFSLQKRHRDF EDDLIIVAAQQSGANCVVTSDAELISLFPEYCKTPAEIVAALE >gi|316916071|gb|ADCN01000020.1| GENE 72 85326 - 85700 403 124 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1202 NR:ns ## KEGG: BLJ_1202 # Name: not_defined # Def: RelB antitoxin # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 5 124 1 120 120 193 100.0 2e-48 MEVAMTMVQMNVRIDAKLKNEVEEVLKGKGVSVSDVIRSLWLYIADRKEVPALETTAEEQ AREEEKQRKLKLIREGAGYVHKELVKAGLISEDTDLMEGLTYKQFRDKMYDEQLDAYYNM KRAD >gi|316916071|gb|ADCN01000020.1| GENE 73 85834 - 88533 4421 899 aa, chain - ## HITS:1 COG:XF0290 KEGG:ns NR:ns ## COG: XF0290 COG1048 # Protein_GI_number: 15836895 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Xylella fastidiosa 9a5c # 11 898 11 902 908 1046 57.0 0 MSLRDDQLATLKAAGKDFDYYNIANLDGIDHLPYSLKVLVENLVRNIDGANITDEHVKTL LDWDPNAEPSHEIQFTPSRVIMQDFTGVPCIVDLATMRDAVKDLGGDPEVINPQVQSDMV IDHSVQIDKYGIADAVQQNMDIEYQRNGERYQFLRWGQQAFKNFRVVPPGTGIIHQVNIE YLAKVVMSKAEANGNALAYLDSCVGTDSHTTTENGLGVLGWGVGGIEAEAAMLGQPISML VPRVVGFKLTGSIPEGVTATDVVLTITDMLRKHGVVGKFVEFYGEGIASVPLANRATIGN MGPEFGSTCGIFPIDNVTLDYLRLTGRSEEQVALVEAYAKANKLWGDASDPDYVEPQYSE YEELDLGTVVPSIAGPKRPQDRILLSEAKSMFEKTAPAYETEKTVKDPVAVSTDFRGDFD IENGDVAIASITSCTNTSNPSVMIAAGLIARNAHAKGLKPKPWVKTSLAPGSQVVADYLK AAGLQDDLDALGYQLVGFGCATCIGNSGPLLPEISEAINANDLTVTAVLSGNRNFEGRIS PDVKMNYLVSPPLVIAYALAGTMDFDFETQPLGTDADGNDVYLKDIWPTNAEVAAVVDGS VSREMFLKDYASVFDGDHRWKGLDVPEGELFAWNDKSTYVRKQTFFDGMKATPDPVADIH GARVLALLGDSVTTDHISPAGAFKASSPAGKYLTERGVEPKNFNSYGSRRGNHEIMVRGT FGNIRLRNQLLASVGEEVTPGGFTYDFLAKKPTTIFEASRDYIDNKVPLVVLAGKEYGTG SSRDWAAKGTVMLGVKAVITESFERIHRSNLIGMGVLPLQFPAGESYESLGLNGTETYDI AGVEKLNEGVTPKTVHVTATHEDGSKTEFDAVVRIDTPGEADYYRNGGILQYVLRNLMK >gi|316916071|gb|ADCN01000020.1| GENE 74 88654 - 91167 2721 837 aa, chain - ## HITS:1 COG:Rv0908 KEGG:ns NR:ns ## COG: Rv0908 COG0474 # Protein_GI_number: 15608048 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Mycobacterium tuberculosis H37Rv # 13 835 7 797 797 471 39.0 1e-132 MSATTAVEMPEIGATGLTPKEVVQRIESGQSNAVKTSTSRSVQDIVRANVFTLFNGIIFA AMVLVLITGSWRDAVFGFVIIINTGIGIVTELRAKRTLDRLSILVASEFLVHRDGRDVEV PHNEIVLDDLLWIRAGEQVPADGQIIQTWGLELDESMLTGESRTVRHKVGEQVYSGATAV SGMALVKVNAVGSHSYAATLTAQAKVYKKTVSDLNKGINTILKFMTFLVVPLCILLILSQ IHTVGGWGTALSTGEWRQAVVSAVAGVVGMIPEGLVLLTSLNFAVAAMRLARHNTLVQEL ESVETLARVDALNLDKTGTITDGGIAFNRLVMLDSANAAAEQAATQALYDCCNEEQPNGT GQAVLAGLKAQGYGAGAVESRVPFSSARKWSAVRKSGETWYMGAPEVIISALEGDYSSVL QQVNEYANDGNRVLLVARSTAPLSEGSCRQKRLRGAVEGANVSDGRQLDVQAEPVALVLC SEKIREDAERTLAWFREQGVRCRVISGDNPVTVGAIARRVKLTGDHEPVAMDARELPEDV NELARVLENVDVLGRVLPDQKKAIVQALHTQNHVVAMTGDGVNDALAIKEADLGIAMGNA APATKAVAQVVLVDSKFSHLPDVVARGRQVMANMERVASLFLVKTVYSALISLGVVLTQI PYPYLPRHITYIGALTIGMPAFILALAPNTRRYIPGFLKRVVTFALPGGIATALSVLLAA WVLPPVMGWNVTGDAADLSALRATSAIILFAMGVFVLARVARPLNGWRGVLVAVFAAAGV IGAFVPFVANFFALILPTGATMVATLIALAGSALIFALCLWLAPLVRGLTGKLSRRH >gi|316916071|gb|ADCN01000020.1| GENE 75 91258 - 91953 440 231 aa, chain - ## HITS:1 COG:no KEGG:BL1395 NR:ns ## KEGG: BL1395 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 231 1 231 231 364 99.0 1e-99 MTRRILGLLACMAAVLSLAACTPAGRAVGDTQDSMPEVAHDSTHPTDVTVGFVGSTDTAA DEFVINALSDDKLNVYYASLETSASSANATDGVSGETESSDAGTASENGADSMDAHTGVD KNAVTAQQGVADFVARAVKIVVISGIDVTDANRESWNQTLTNAREAGIPVALIDPKHAPE DELLYAVILHLNTNSADSGDTADTKPMTITDAVLTITRDEPHEREIKVTVS >gi|316916071|gb|ADCN01000020.1| GENE 76 91965 - 93233 1272 422 aa, chain - ## HITS:1 COG:Rv2689c KEGG:ns NR:ns ## COG: Rv2689c COG2265 # Protein_GI_number: 15609826 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Mycobacterium tuberculosis H37Rv # 11 422 19 403 405 160 31.0 3e-39 MQAEVRIERYADQGRCVAHIDGRVVFVRFALPDELVRVELDEPHDRDDRFWTGEVVEVLE PSEDRVTPAWPLAGPLAMGGGVGGADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIE RMPGDKAAGGLNWRTRIEMIADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVW EGGFEPGSQIRLSMPEPRGEIVDTAAADDNYAVLVDGELRAGSQLLTEQVTINGTTFDYQ VDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPLATMTGERTR MLSVEGARVAVKNAQRNLRAMNLNDVDARAGDVSRTLDHVPAHLAKPNVVVLDPPRAGAR AKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYELKDIRAFDIYPMTHHVETVALF TR >gi|316916071|gb|ADCN01000020.1| GENE 77 93223 - 93981 822 252 aa, chain - ## HITS:1 COG:no KEGG:BL1393 NR:ns ## KEGG: BL1393 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 252 1 252 252 467 100.0 1e-130 MADNKRTGLSALADAGNEGEDFSVIDAIGGPRGVIESMLPGVVFVVLFVATSNLNLTIAV SAVLAVLQVIVRLIQRQSVMGAVSGLVAVGICLIWAWQTHEARNYYIFGFITNAGYAALL AVSLIARVPGLGLVVEFIRSLPTEHFKAWFHDWMDDKALKRAYMIVTGLWVGLFLLRLVV QVPLYLTNHVAALGVTRLLMGIPFWALAIWVSYLIIATPMHRHKVAARKIQTEVAVDAEL EPSATGKDDDAS >gi|316916071|gb|ADCN01000020.1| GENE 78 93997 - 94842 1126 281 aa, chain - ## HITS:1 COG:no KEGG:Blon_0927 NR:ns ## KEGG: Blon_0927 # Name: not_defined # Def: narrowly conserved hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 281 1 281 281 478 98.0 1e-134 MGLFGFGKKKSKKEAEPAVEPVDEDKVAAEAANAAAKAESAETVLAEPSSEYQGRGEERG PWDVNDEDVPDYDDYLDLGAYYLPFLQGIQLRIKANRATQQVLGSTITFGSSSLEIEAFA APKTLGLWDDVRGDLLEANKAASEVDGVFGTELKLPVNVKGGKTVNTRIVGVDGPRWMLR GIFSGKAAIDPGSPETEALNKFFAGIVVERGEEPLAPRDLIPMHPPVAPAERKAAAEAGE QNGKEHFKDIPDNKPKGPLSQDQQTEVKTTLSRGPMFSEVR >gi|316916071|gb|ADCN01000020.1| GENE 79 94993 - 95302 229 103 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 103 1 103 368 168 97.0 6e-41 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSG Prediction of potential genes in microbial genomes Time: Fri May 13 12:55:48 2011 Seq name: gi|316916037|gb|ADCN01000021.1| Bifidobacterium sp. 12_1_47BFAA cont1.21, whole genome shotgun sequence Length of sequence - 35676 bp Number of predicted genes - 35, with homology - 33 Number of transcription units - 13, operones - 8 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 62 - 412 399 ## COG2826 Transposase and inactivated derivatives, IS30 family 2 1 Op 2 . + CDS 478 - 1338 759 ## COG0708 Exonuclease III + Term 1468 - 1507 0.1 3 2 Tu 1 . - CDS 1322 - 1567 108 ## - Term 1578 - 1625 14.5 4 3 Op 1 . - CDS 1648 - 3657 743 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 5 3 Op 2 . - CDS 3680 - 3784 124 ## Blon_0924 binding-protein-dependent transport systems inner membrane component 6 3 Op 3 49/0.000 - CDS 3792 - 4685 1281 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 7 3 Op 4 21/0.000 - CDS 4704 - 5630 1213 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Prom 5697 - 5756 4.3 - Term 5847 - 5886 5.1 8 3 Op 5 . - CDS 5931 - 7571 3072 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 7698 - 7757 2.5 9 4 Op 1 . - CDS 7824 - 8891 887 ## COG0582 Integrase 10 4 Op 2 . - CDS 8926 - 9183 352 ## BLJ_1215 hypothetical protein - Prom 9239 - 9298 3.0 - Term 9293 - 9330 1.1 11 5 Op 1 . - CDS 9393 - 10457 1308 ## COG0287 Prephenate dehydrogenase 12 5 Op 2 . - CDS 10451 - 11428 1205 ## COG0077 Prephenate dehydratase 13 5 Op 3 . - CDS 11508 - 11954 532 ## BLD_0247 hypothetical protein - Term 12019 - 12051 2.8 14 5 Op 4 . - CDS 12054 - 13985 3254 ## COG1217 Predicted membrane GTPase involved in stress response - Term 14209 - 14251 12.2 15 6 Op 1 1/0.000 - CDS 14300 - 15649 1895 ## COG0477 Permeases of the major facilitator superfamily 16 6 Op 2 1/0.000 - CDS 15681 - 16928 1157 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 17 6 Op 3 13/0.000 - CDS 16931 - 17824 427 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 18 6 Op 4 10/0.000 - CDS 17828 - 19459 1938 ## COG0029 Aspartate oxidase 19 6 Op 5 . - CDS 19551 - 20831 1937 ## COG0379 Quinolinate synthase 20 6 Op 6 . - CDS 20891 - 21718 648 ## COG1051 ADP-ribose pyrophosphatase 21 7 Op 1 21/0.000 - CDS 21850 - 22527 743 ## COG1386 Predicted transcriptional regulator containing the HTH domain 22 7 Op 2 3/0.000 - CDS 22579 - 23493 738 ## COG1354 Uncharacterized conserved protein 23 7 Op 3 1/0.000 - CDS 23512 - 24351 987 ## COG1192 ATPases involved in chromosome partitioning - Term 24388 - 24432 2.2 24 7 Op 4 . - CDS 24613 - 27459 3809 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 25 8 Tu 1 . - CDS 27587 - 28522 814 ## COG4974 Site-specific recombinase XerD - Term 28523 - 28552 2.8 26 9 Op 1 . - CDS 28583 - 28966 636 ## PROTEIN SUPPORTED gi|23335403|ref|ZP_00120639.1| COG0292: Ribosomal protein L20 27 9 Op 2 . - CDS 29019 - 29213 321 ## PROTEIN SUPPORTED gi|23335404|ref|ZP_00120640.1| COG0291: Ribosomal protein L35 28 9 Op 3 . - CDS 29194 - 29829 917 ## COG0290 Translation initiation factor 3 (IF-3) - Prom 29896 - 29955 3.6 29 10 Tu 1 . - CDS 30201 - 31205 1303 ## COG0421 Spermidine synthase 30 11 Op 1 . + CDS 31437 - 32162 761 ## COG1564 Thiamine pyrophosphokinase 31 11 Op 2 . + CDS 32227 - 32406 98 ## 32 11 Op 3 . + CDS 32403 - 33461 1749 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 33508 - 33546 8.3 33 11 Op 4 . + CDS 33555 - 34064 607 ## COG2606 Uncharacterized conserved protein + Term 34067 - 34118 8.6 34 12 Tu 1 . - CDS 34104 - 35096 395 ## PROTEIN SUPPORTED gi|229229955|ref|ZP_04354520.1| SSU ribosomal protein S1P; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase + Prom 35229 - 35288 3.4 35 13 Tu 1 . + CDS 35388 - 35676 188 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316916037|gb|ADCN01000021.1| GENE 1 62 - 412 399 116 aa, chain + ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 1 99 282 380 383 92 43.0 2e-19 MPPAARVDRTWDNGTEASLHVLVDEALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGT SFEDLTQDELDAIVGEINDTPMKLLGYKTPNEVWDEEMAKLQSKQADPKPAVALTS >gi|316916037|gb|ADCN01000021.1| GENE 2 478 - 1338 759 286 aa, chain + ## HITS:1 COG:RSc0140 KEGG:ns NR:ns ## COG: RSc0140 COG0708 # Protein_GI_number: 17544859 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Ralstonia solanacearum # 3 285 2 256 261 186 38.0 4e-47 MTITITTSNVNGIRAAKRKGIEDWAGKHAPDVWCIQEVRAPQDDVDSIFDEFGFEYATAG KIEAPANLHAMNEVCRVKGRAGVGLLTDLEVLAKRYGLPGLSEDVDSGRWIETDVKTPEG YTVTVASVYVHAGNTDDPTKMEQKYRFLDTMLKRMGALRDEAAHGGKQAVLCGDFNIAHT PLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDN NVGWRIDYQFATPELAETARGFVIDKAPTYDKRWSDHAPLTITYEV >gi|316916037|gb|ADCN01000021.1| GENE 3 1322 - 1567 108 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVRVGRKRKKWCFPDVVPQFVGQHQHQSIDMSVVPQQISHEARNYAILSVVDNYSCCGAW DDPRKSSIFGCCPTEYVIPRM >gi|316916037|gb|ADCN01000021.1| GENE 4 1648 - 3657 743 669 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 255 660 145 524 563 290 42 6e-78 MTDNTNAKMLAMQKEHGPLLEVKDLAIDFTTDTGKPVHAVRDANFTVYPGQWVAIVGESG SGKSTSAMAVLGLLPGTGHVVNGSIKLDGEEIAGAKQSEFDKLRGTKMGLVPQDPMSNLN PVWRIGTQVKEALKANNMDVAHEKRSALAKALAGDEVEVKGNDDETFLGAKELPELMTEA KKALTEAGVSGEAFDKAVARFTNEWVPGSETRWRVADDLIKAGVADDQAWYLAKKYVTGS TMDDRIAGLLSEAGLPDAATRARQFPHEFSGGMRQRALIAIGLACRPDLLIADEPTSALD VTVQKRILDHLHMLTDSLGTAVLFITHDLGLAAERAQHIVVMYKGQVVESGPSLEVLQHP QHPYTKRLVAAAPSLASQRIISAKERGEDADALLDHHIAGESTLEKSEHIITVDHLTKEF KLPRKKEMFKAVDDVSFSVKRGTTLAIVGESGSGKSTVANMVLHLLKPTSGKVFYEGRDT STFKSKDLLGFRRHVQPVFQNPYGSLDPMYSIFRSIEEPLRIHKIGDKKWRANRVKELLD MVEMPASVMGRYPNELSGGQRQRIAIARAMALDPDVIVCDEAVSALDVLVQDQVLRLLND LQAEKGLSYLFITHDLAVVRQIADEVVVMQHGKLVEHATTDEVFDHPQKQYTRDLLDAIP GGKLQLGLD >gi|316916037|gb|ADCN01000021.1| GENE 5 3680 - 3784 124 34 aa, chain - ## HITS:1 COG:no KEGG:Blon_0924 NR:ns ## KEGG: Blon_0924 # Name: not_defined # Def: binding-protein-dependent transport systems inner membrane component # Organism: B.longum_infantis_ATCC15697 # Pathway: ABC transporters [PATH:bln02010] # 1 34 301 334 334 62 97.0 4e-09 MLFYPSAALAITVLAFIMMGDAVKDALDPKSRTA >gi|316916037|gb|ADCN01000021.1| GENE 6 3792 - 4685 1281 297 aa, chain - ## HITS:1 COG:Cgl1946 KEGG:ns NR:ns ## COG: Cgl1946 COG1173 # Protein_GI_number: 19553196 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 26 286 36 296 344 294 55.0 1e-79 MANETTENELNETGEPGTEYFMETLPGQDRYVAPLDETPLQDVDSVDESAPATSMWADAW RTLRRNPLFIISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCD VYTRVVYGTRTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWIDAVLSRITDIFFALPMLLG AIVVLQMFKTSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNL FRHILPNSLAPIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGRHLQRADQPAD >gi|316916037|gb|ADCN01000021.1| GENE 7 4704 - 5630 1213 308 aa, chain - ## HITS:1 COG:Cgl1945 KEGG:ns NR:ns ## COG: Cgl1945 COG0601 # Protein_GI_number: 19553195 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Corynebacterium glutamicum # 1 308 1 308 308 351 59.0 1e-96 MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQ PFIVQYFIYLKNALTLNFGDTFAGQPVLDEITRAFPVTIRLGLMAFVFEAIFGVVFGIIS GLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWAILPVTAGADPGFLDLLMPAM VLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQD IGALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDMLYAA LDPRIRYA >gi|316916037|gb|ADCN01000021.1| GENE 8 5931 - 7571 3072 546 aa, chain - ## HITS:1 COG:Cgl1944 KEGG:ns NR:ns ## COG: Cgl1944 COG4166 # Protein_GI_number: 19553194 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Corynebacterium glutamicum # 38 545 42 533 534 469 51.0 1e-132 MKKKALAFAAMACSVAMLLSACGGSNSNAASGDTAGSNIITAYNSEPQNPLIPGNTNETG GGRPVDLLFSRLVSFDKDGKASNEVAESITPNDDATQYTIKIKSGWKFTDGTPVTAESFT KAWSYVANAKNAQKCSSFFSAIAGYDDLQKDGLKGDEQLSGLKVVDDTTFTVDLNQSDSV FPIKVGYSAFAPLPESFYKDPKAFGEAPVGNGPYKFSKWDHNKEIALVKNPDYKGNEDVK NDGVTFKVYTDDSAAYRDIQAGNLDVMESVPAAFTKTFKTDKKVQAYSEAGSVIQTFTIP SSLDHFKNDEEGQLRRQAISMAINRDQLIDKVLNGNATAATEFTSPKTPGYSDSLKGADN LKFNASKAKELWAKADAISKYDGQLTFSYNADGGAKPLYDAIVNQLKNNLGIDAATNPIP TFQEFRDAVTNRQMKGAFRTGWQPDYPFAENYLWQLYSTAAADGNGSNDGDYKNPAFDDL CKQAAAASSTDDANKLYQQAEEILLNDLPAIPLYYSNASGVASLNVKSGYAFDWQNLPTY TEMSKK >gi|316916037|gb|ADCN01000021.1| GENE 9 7824 - 8891 887 355 aa, chain - ## HITS:1 COG:Cgl1981 KEGG:ns NR:ns ## COG: Cgl1981 COG0582 # Protein_GI_number: 19553231 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Corynebacterium glutamicum # 10 355 33 315 315 219 40.0 8e-57 MSSTQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRS WMAVESRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQA EQLLDVAEHAVATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADKRDNARV TAESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRA LETWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISP HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA >gi|316916037|gb|ADCN01000021.1| GENE 10 8926 - 9183 352 85 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1215 NR:ns ## KEGG: BLJ_1215 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 85 1 85 85 151 100.0 6e-36 MTLPRQIPAGARVVVRITDGIDPVDHRMKFRDYVGHVVSWDGYTLEMVRDAAANGSRPAQ NVTIHQEQIATLKPVPERRNTPPRP >gi|316916037|gb|ADCN01000021.1| GENE 11 9393 - 10457 1308 354 aa, chain - ## HITS:1 COG:ML2472 KEGG:ns NR:ns ## COG: ML2472 COG0287 # Protein_GI_number: 15828337 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Mycobacterium leprae # 5 238 15 244 327 129 38.0 1e-29 MVDTVGIVGLGLIGGSLARRLTERGVRVVAWNHRPHPYAQAEADGIFCKSTLSELMDAEP DVVVLCNPLKAMPAILAALAPLMGDHPNTTLTDVGSVKGMVRDQVKAAGLGKCYVGAHPM AGNELSGWQAADPHLYDGALWAITVDESTDYRRFLDVAAMITKDVGNRVIVVDDETHDKA AAMISHMPHVVSTALINELVANPDRNIAAALAAGCWRDMTRVSLTDPDRTRAMVEEDSLN VEVLLRRMAARLTDMADQLHAGADGEQDVMGFFAEGDPFRRYKAAVTRAGITAAQAGTAT AQQAGTTAAGFPERELAVPEAGWQQTLLFSARRGEAITGFIHPRQAIVQLRPAM >gi|316916037|gb|ADCN01000021.1| GENE 12 10451 - 11428 1205 325 aa, chain - ## HITS:1 COG:aq_951_2 KEGG:ns NR:ns ## COG: aq_951_2 COG0077 # Protein_GI_number: 15606269 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Aquifex aeolicus # 3 285 5 272 277 95 29.0 2e-19 MARMKLFYLGPEGTFTHQAAMTAADQFATLGDFDLIALPDVPAIMQAVQSRQGWGVIAWE NNVEGYVVPNLDALIDAPNAAGFARISVDVAFNAFTVRGHSIYDCTGNPVSAHPHGLAQC TRFIAEHHLQPEPASSNAAACRDLKPGRVALGPSICGELYDLDTLAEHVQDFDGAHTEFL VIAPRDVVQELNARAHSNDAGDFETIITFIPLVTGPGVLADLLDVLRDAGLNMTSFISRP IKGHDGTYSFIATLDAAPWEPRFRTALEEIAGHGDWAKTLAVYPRRERPNPPVDAWMLPE GGVHITNRAPEGWQYTEEARKELLW >gi|316916037|gb|ADCN01000021.1| GENE 13 11508 - 11954 532 148 aa, chain - ## HITS:1 COG:no KEGG:BLD_0247 NR:ns ## KEGG: BLD_0247 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 148 1 148 148 255 99.0 3e-67 MTVKSTTELRPWSYRQNALVKSLITIAAGVASAFVGTFAHRMGAELDIPYGLVLAFLLIG LSTWCARSRMGAVGLALHLIASSLTAWGMALTTTSGKALIVAGFQGDMPFFSQHAGYIWL YGLILVQVVLLILPARWFVIPTHSESRA >gi|316916037|gb|ADCN01000021.1| GENE 14 12054 - 13985 3254 643 aa, chain - ## HITS:1 COG:ML1498 KEGG:ns NR:ns ## COG: ML1498 COG1217 # Protein_GI_number: 15827789 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Mycobacterium leprae # 8 621 4 612 628 706 60.0 0 MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILA KNTAVEYTGPLAAKYDHPEGITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLP QTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLLLGLADDVQHEGIDLDLDQL LEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFETIISTIPAPEYEEGAPLQAHVANI DSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERIPVESAGPGD IVAVAGVNDIMIGETIVDPNDPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARM IKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAEQMRREGYELTVGRPQVVTK KIDGVINEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIG FRTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFF VEPQSPVYEGQVVGVNNKPDELDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDF ANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQGK >gi|316916037|gb|ADCN01000021.1| GENE 15 14300 - 15649 1895 449 aa, chain - ## HITS:1 COG:Cgl2919 KEGG:ns NR:ns ## COG: Cgl2919 COG0477 # Protein_GI_number: 19554169 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 12 415 3 407 439 393 55.0 1e-109 MSTTTSAQPAQLTRNERLDRLPFNKAHRKLLVASGIGWAFDAMDVGLVSFVVAAIAADPH FNLTPTEKSWVLSIGFVGMAIGAAVGGFIADRVGRKTVFTATLIIFGIANGAMALSWSLG MLLGARLIIGLGLGAELPVASTLVSEFSPTKQRGRMTVLLESFWAVGWIVAAMIGYFVIP NTGDWGWRWALAIGALPLLYAIVTRVHIPESVRFLEAKGREDEAEKAVRYFEEAGGVAPV TSPKGKPLPKIKTRELFGSKYLARTIAIWATWFFVNFSYYGAFTWMPSLLADQFGSLTKS FGYTLAISIAQLPGYFLAAWLVEVWGRRKTLSIFLAVSAVAAFAFSQAGSVALVLVFGML LSASNLGAWGVLYAVTPEIYPTRLRGAAAGAAAAVGRIAAIIAPLLMPWFLTLSGGNKAV AFIIFAAAFIIACVAALCLPERKGLDLED >gi|316916037|gb|ADCN01000021.1| GENE 16 15681 - 16928 1157 415 aa, chain - ## HITS:1 COG:MA3264 KEGG:ns NR:ns ## COG: MA3264 COG1104 # Protein_GI_number: 20092080 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Methanosarcina acetivorans str.C2A # 14 401 58 422 448 277 40.0 2e-74 MADTPNTSSEAGELYLDAAATEPVSPAVIEAMTPFLTEAYANPASVHQPGKTAARALDAA RASFAAALGARPDDVIFTSGGTESDNLAIKGIAMARMRKLGLRPVCGFAEADGKQPANCR PRIIISAIEHPAVAQSAAWLHEWFGFEVVRIPVDAQAHLDLDALERELDGEASERTTMVS TMLANNEVGTVEPVEELVRIAHAHGVPIHVDAVQAAGQIPIRFRDWDVDALSVSGHKFGT PKGLGALLVRGRTPIEPVLSGGGQERGLRSGTQNVAGAVALAIGLNESNARMQAQYRELV ASRDMLIDAVRRVAPRADLTGDPERRLPGHASFIFPGVTGEALLVDLDARGIAASSGSAC AIGRHEIPATLLAMGLEPSIAKSALRMTFRKPLTREQVERISLAIEESYTDLTRH >gi|316916037|gb|ADCN01000021.1| GENE 17 16931 - 17824 427 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 7 294 11 282 286 169 36 3e-41 MLTSHIIRVAVEAALAEDAPYGDITCETTIPADETGSAHLTARENGVMSGIDVFAAAFAA QNPAVTVTVTVKDGERFQRGQILATVEGPVRDLLTAERIALNFTQRMSGIATMTAAFVDA VNAIYGDDYDGPVTRPRRYERTRIVDTRKTTPGLRPFEKYAVVCGGGHNHRYGLSDAVMM KDNHLAALAARGIDLAGAIRHVREQVGHTTHIEVEVDRLDQIPAVLAGGADTIMLDNFSL DDTRRGVELIDGKAIVEASGNMSLERVPAVAATGVDVISVGALTHSVRSIDLGLDWN >gi|316916037|gb|ADCN01000021.1| GENE 18 17828 - 19459 1938 543 aa, chain - ## HITS:1 COG:sll0631 KEGG:ns NR:ns ## COG: sll0631 COG0029 # Protein_GI_number: 16332129 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Synechocystis # 5 538 7 538 553 327 41.0 3e-89 MSNTEIVVVGAGVAGLSAALAAAGTGHDVTLVTKAELVESNTYHAQGGIAAAIFSDDDPK LHAADTMAAGHGLCDPKAVDILTREGAERVREFAAAGVHFDRDAQGHMLRGLEAAHSRAR VVHAGGDATGKVLELDVSAMVRKNPRIHIIENAFLKDLIVRDGHIAGVRLLIDGQDKDLA ADRVILAAGGAGRMYPYTTNPSVATADGLAAAWRAGAQVADLEFYQFHPTAMAVGEHFLV SEAVRGEGAVLLDEHGHRYMKDIDPRAELAPRDVVARENFRVMQAQGGKPVMLDVSPMTR ENPDLASFLAHRFPTIDAYTRSLGFDWSKEPIPVAPAAHYYMGGIRTDLNARTSIPGLYA AGECARTGVMGSNRLASNSLLEGLVYGRRAGLAAVADGDDAVWAPEPFLNSATGAVFDHA PIALAAPAATAAADDTAADKVWDRTRIQNTMWHGVGVLRDEAGLKTAIAELGQGLAAANA QADINADGAASSVEALENRNMLTVGYVAATAALARTESRGAHARTDYSEPVDNWAHSVAY IKD >gi|316916037|gb|ADCN01000021.1| GENE 19 19551 - 20831 1937 426 aa, chain - ## HITS:1 COG:Cgl1045 KEGG:ns NR:ns ## COG: Cgl1045 COG0379 # Protein_GI_number: 19552295 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Corynebacterium glutamicum # 1 426 1 416 428 556 64.0 1e-158 MTALFTAPSVDEIIAKLGAQSTCDAGLTQDPWHFDTTTPSYGPGASMLDRLPANAPRQQV LPDEYRKASDEELQQRISDAKQRLGSKLLILGHFYQRDEIIKHADFVGDSFQLAKNATER PDADHIVFCGVHFMAETADILSTPEQSVTLPNLSAGCSMADMANIDQVQECWDQLGEICG TQPDSDGLQQIIPVTYMNSSAALKAFCGRNGGIVCTSSNAHAVLEWAFARGKRVLFFPDQ HLGRNTARAMGIPLSEMPLWDPFKAQGGAADPADYARAKMILWKGFCSVHQRFTVEQVER ARKAYPGVKVIVHPECSMQVVDAADGTGSTAYIVKEIANAPAGSAIAVGTEINLVNRLAA QYPDKTVFCLDPVVCPCSTMYRIHPAYLAWALENLEAGNVVNRITVDEDTAREAKVALER MLRVHP >gi|316916037|gb|ADCN01000021.1| GENE 20 20891 - 21718 648 275 aa, chain - ## HITS:1 COG:Cgl1046 KEGG:ns NR:ns ## COG: Cgl1046 COG1051 # Protein_GI_number: 19552296 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Corynebacterium glutamicum # 49 234 20 204 206 188 54.0 1e-47 MGFGNVSERRSAPPQVGVSVVILALGPEDDTGNSAADSGNAANSAHSRLWLPLVKRVRQP FLGCWALPGGDLRSDRSLEQSAYAALESTTDLHPRYLEQLYTFGGPTRSHGGLPMVSVVY WALVGQTEAAGFEDGDNVRWFPEDELPELAFDHRQIIDYALLRLRSKIEYSDVATRLLGP TFTLRQLHGVYEAIGGEPLDLANFRRKMLASGDLEDTGEKMREGRQRPATVYRYIPKRPV ENGTPHESDGDDIVELSRQGEREDALDALVPSARI >gi|316916037|gb|ADCN01000021.1| GENE 21 21850 - 22527 743 225 aa, chain - ## HITS:1 COG:ML1369 KEGG:ns NR:ns ## COG: ML1369 COG1386 # Protein_GI_number: 15827714 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Mycobacterium leprae # 37 210 28 195 231 134 44.0 1e-31 MADAESTAESAKAAVRGVEETHPEYVDFAVDDFPGGLPACLEAILMVADQPQTATELARI LALDRNTVEEALRALHDDYEGDESRDIRPRGFELRRTARGWQFASRAAFEPVVSSFVTDG QTARLSQAALEALAIVAYRQPVTRAQVAAIRGVNSDGVIRSLTVRGLIKEDGVDPESRAA LLVTSEFFLDQMGLKSLDELPSLAPFLPSVAEMTQSKSEDTDVIS >gi|316916037|gb|ADCN01000021.1| GENE 22 22579 - 23493 738 304 aa, chain - ## HITS:1 COG:MT1750 KEGG:ns NR:ns ## COG: MT1750 COG1354 # Protein_GI_number: 15841169 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 22 291 5 269 278 157 35.0 2e-38 MNETSLSRLPSLREAGSRSEAEGSSAEAEISTEESATSGFRVNLEVYSGPFDALLGMIAN NRLELTEVSLSSITEEFLTYVRGLDFTKNMDEASAFLDIASILVEAKSVAILPGGEDSQH DEQSLEVLRERDLLFARLLQYRAYKQAAGDFRARIAANSGRFPHPAAMDEGVAAMLPELV WTLTPLELARLTAQVIANAPASEVSIHQLHVPLVDLRAQSLVVRDRLIAALESKGDQSIS FSELTRDCTSRIEVVARFMAVLVFFKQGVLQYQQDGPFAELHLRWVPGVAETMSDVNISE GDFA >gi|316916037|gb|ADCN01000021.1| GENE 23 23512 - 24351 987 279 aa, chain - ## HITS:1 COG:Cgl1387 KEGG:ns NR:ns ## COG: Cgl1387 COG1192 # Protein_GI_number: 19552637 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Corynebacterium glutamicum # 5 275 16 287 290 301 53.0 9e-82 MPTDLLGREYETFPAPEPLQQHGPARVIAMCNQKGGVGKTTSSINIAGALAQYGRRVLIV DFDPQGAATVGLGVNANTVENTIYTALFDISVDPHDVVQHTAFENIDVIPANIDLSAAEV QLVTEVGREQILNSVLRKLKSEYDLIIVDCQPSLGLLTVNALAAADGVIIPVAAEFFALR GVALLMQSIEKVQSRINPALEVDGVLITMYTKTLHCEEVCQRVYEAFSEKVFHTFISRSI KLPDSTVAAAPVVVYAPEHKTSKEYREVARELIARGIVA >gi|316916037|gb|ADCN01000021.1| GENE 24 24613 - 27459 3809 948 aa, chain - ## HITS:1 COG:L119891_1 KEGG:ns NR:ns ## COG: L119891_1 COG1136 # Protein_GI_number: 15672696 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Lactococcus lactis # 1 292 3 290 290 220 39.0 1e-56 MLQIKSISKRYKTGDFVQQALDKVSLNLRDSEFVAILGPSGSGKTTLLNIIGGLDRYDDG DLVINGISTRQYKDRDWDSYRNHTIGFVFQSYNLIPHQTILSNVELALTISGIGKADRRE RARKALEKVGLGEHINKKPNQLSGGQMQRVAIARALVNDPDIVLADEPTGALDSDTSVQI MNLLKDVAKDRLVVMVTHNPELAEQYATRIVNLRDGVIRSDSDPFVVDETAEQPAVYKTM GRASMSFATSLALSFNNLKTKKARTLLTSFAGSIGIIGIALILSVSTGVNTYISDIQRDT MTAYPITVDSQTFDLSSMMGGQMGGDDGYGGKTHKTDGIYPDDRSVKQASSLTSSITENN LTRFKKYLDNSKSEIHQYVGSTGIQYTYDVKFSVFDHDPAGTLVNADGVTIGSSDSASMA SQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKVITDNYQ VVNGSWPKSKDEVVLVLDDNNSVPLTTLYELGLLPASDYHEMMSKLNAGDKVSTPQDKID YAKALDQTLYMIPASDQYVKGDDGHYRFIGNDKDEIEQRLETATKLKVVGVVKAKKDASA TPLAAGVGYARALTNDLIDRAASSAIVTDQKANPNTNVLNGMTFSPSDDATKVADARTYV ASLGVTQKANMAKSMMSAGQQSGTGASDAAGAGAAGVAGAAGAGDQAAAMAAMSEQQLAD SFDAYIATASNDVLVAIYDQYVSTGTYDDNLAAFGVVSRDAPSSINIYADSFEDKDHIAD AITDYNNTVSKKDKITYTDYVGLMMSSVTTIVNVISYVLIAFVSVSLIVSSIMIGIITYI SVLERTKEIGILRAMGASKHNVSQVFNAETGIIGLCSGLLGVGLTVLLNIPINAVLHHFI GNADVNAALPVTGGVVLVILSVVLTLIGGLIPSRKAAKQDPATALRTE >gi|316916037|gb|ADCN01000021.1| GENE 25 27587 - 28522 814 311 aa, chain - ## HITS:1 COG:Cgl1385 KEGG:ns NR:ns ## COG: Cgl1385 COG4974 # Protein_GI_number: 19552635 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Corynebacterium glutamicum # 11 310 6 304 304 258 47.0 1e-68 MGTMTNGFTRLTEQFLVHIGVERGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDV EDYIAALDQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTV DEVTRLLDAAAVGGSTDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGK GSKQRLVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIV KATGERAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLI ETYLTSHPRAR >gi|316916037|gb|ADCN01000021.1| GENE 26 28583 - 28966 636 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23335403|ref|ZP_00120639.1| COG0292: Ribosomal protein L20 [Bifidobacterium longum DJO10A] # 1 127 1 127 127 249 100 2e-65 MARVKRAVNAHKKRRVVLERASGYRGQRSRLYRKAKEQLLHSFNYNFRDRKARKGDFRKL WIQRINAAVRAEGITYNRFIQGLRLAGIELDRRALAEIAVSDPDTFKTIVDAAKAALPED VNAPVEA >gi|316916037|gb|ADCN01000021.1| GENE 27 29019 - 29213 321 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23335404|ref|ZP_00120640.1| COG0291: Ribosomal protein L35 [Bifidobacterium longum DJO10A] # 1 64 1 64 64 128 100 6e-29 MPKMKTNSAASKRAKITGTGKVKHVGSAMRHNLEHKSARKRRELSADDVLRGGQAKKLHQ LLQK >gi|316916037|gb|ADCN01000021.1| GENE 28 29194 - 29829 917 211 aa, chain - ## HITS:1 COG:ML1394 KEGG:ns NR:ns ## COG: ML1394 COG0290 # Protein_GI_number: 15827729 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Mycobacterium leprae # 1 186 9 182 185 156 50.0 3e-38 MGVIATSVALNLAKEANLDLVEVAPNAKPPVAKLIDYGKFKYNEKIKAREARRNQSTAEI KEIRFRLKIDDHDFDVKKGHVTRFLNGGDKVKVTIMLRGREISRPIGGVELLQRLADDVE EYGTVESKPKQEGRNIIMTLAPKGKKVHTQSEQRRRGAESRAERQARQAARLAAKQESQA QAAADAQSAISQKTSDKKQTSKEGSNAEDEN >gi|316916037|gb|ADCN01000021.1| GENE 29 30201 - 31205 1303 334 aa, chain - ## HITS:1 COG:PA4774 KEGG:ns NR:ns ## COG: PA4774 COG0421 # Protein_GI_number: 15599968 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Pseudomonas aeruginosa # 71 225 90 255 349 60 27.0 6e-09 MVSAVIFVATSCVSPLTGFAFWETNLAYEGESIYNYLQVKNLSDRTILSTNVLFGVQSVT MKDKGLTGMYYDTALAAPALADNANSALILGMGTGTYARQLKQYYPKMNITGVEIDQKIT DLAGEYFDEPADIPVTTYDGRAWLAASHDKYDVIMVDAYQDITIPFQMSSTEFFTMVREH LNPGGVMVVNMNMISDGQGSINEALSDTIASVFGNGNTLTADVPNTTNRELFAKKPGSGS EENSMQQASKALNLRETTYERTGSEDLEWYMEEVASRFRKVNEPDSASTILTDDKAPVEV LGMHAIDQIIADEAGPYRQILKDEGFGGLLRAVQ >gi|316916037|gb|ADCN01000021.1| GENE 30 31437 - 32162 761 241 aa, chain + ## HITS:1 COG:TP0518 KEGG:ns NR:ns ## COG: TP0518 COG1564 # Protein_GI_number: 15639509 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Treponema pallidum # 6 145 5 159 230 65 34.0 9e-11 MTQVCVIFGAGEYYAGTPVVPAGAYVIAADGGLDHTRQLGIVPDVVVGDFDSLEGRPPRT DVRTIALPALKDDPDMLSALKVGWSAGCREFHVYGGLGGRIDHTISGIQLMALLARHGAS GYLYGDGLIVTAITDGRLSFPAHPVPEDGRMVSAFSHSDVSLGVNEPGLKYELKDGTLTN TVVQGVSNEFRDGVDAAISVEHGTLIVTFPIEVALPQVSRFHEFGGDIGELDTAVSKLLV R >gi|316916037|gb|ADCN01000021.1| GENE 31 32227 - 32406 98 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVAGNPNCERSQKIRHFCPKRTLKRCHVYRVGITVATVGKQWPGVPKRAKATLQGRIT >gi|316916037|gb|ADCN01000021.1| GENE 32 32403 - 33461 1749 352 aa, chain + ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 4 350 3 333 333 370 58.0 1e-102 MTVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGT FRHDDGTPVDVKATEDSIIVDGKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKS QAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVIVSAGSCTTNSMAAMVKLLDE KFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVN GKLQGHAQRVQVPDGSVTELTTVLNTETTADEINAAFKAAFSDTDYYGYNDEGIVSSDIL GDTHGGVFDPTQTDVNTIDGVTLARTVSFYDNEYGFTSNMIRTLLYFAEISE >gi|316916037|gb|ADCN01000021.1| GENE 33 33555 - 34064 607 169 aa, chain + ## HITS:1 COG:ECs0534 KEGG:ns NR:ns ## COG: ECs0534 COG2606 # Protein_GI_number: 15829788 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 14 167 2 156 159 129 47.0 3e-30 MAKKSKHDKGAGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFK TLMADTGAERVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQK TRHKTVLDESALQFDQILVSGGKRGLSVGVNPQDLLKVLNAVAAPIGTW >gi|316916037|gb|ADCN01000021.1| GENE 34 34104 - 35096 395 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229229955|ref|ZP_04354520.1| SSU ribosomal protein S1P; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Desulfotomaculum acetoxidans DSM 771] # 5 325 3 297 676 156 30 1e-37 MTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVE DLAGQGAVFVQELAEIPDAAAQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKV HREVLRFVREGYEIVYIGHKGHDEAVGVVGESPEHVHLIEHESDVDSLDFAPDTKLVLLS QTTLSVDETADTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANS SNSVRLMEVAQEGLGERGKAYRVDDASELDPAWFEGLESVGISSGASVPDELVSGVIDAL QNLGFTGMKSVETIKENMHFVLPAELRRKK >gi|316916037|gb|ADCN01000021.1| GENE 35 35388 - 35676 188 96 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 96 1 96 358 164 93.0 9e-40 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPY Prediction of potential genes in microbial genomes Time: Fri May 13 12:56:46 2011 Seq name: gi|316915941|gb|ADCN01000022.1| Bifidobacterium sp. 12_1_47BFAA cont1.22, whole genome shotgun sequence Length of sequence - 128617 bp Number of predicted genes - 98, with homology - 94 Number of transcription units - 52, operones - 23 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 17 - 445 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Term 334 - 388 -0.5 2 2 Op 1 3/0.000 - CDS 573 - 2663 2435 ## COG0358 DNA primase (bacterial type) 3 2 Op 2 . - CDS 2836 - 4143 1460 ## COG0232 dGTP triphosphohydrolase - Term 4188 - 4239 9.0 4 3 Tu 1 . - CDS 4315 - 5667 1897 ## COG0787 Alanine racemase + Prom 5692 - 5751 1.9 5 4 Tu 1 . + CDS 5862 - 7322 2459 ## COG0531 Amino acid transporters + Term 7333 - 7371 4.4 - Term 7361 - 7401 8.1 6 5 Tu 1 . - CDS 7517 - 8002 628 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 8136 - 8198 5.9 7 6 Tu 1 . - CDS 8214 - 8708 900 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 8 7 Tu 1 . - CDS 8821 - 10776 2055 ## COG0514 Superfamily II DNA helicase - Prom 10853 - 10912 2.4 + Prom 10769 - 10828 2.0 9 8 Tu 1 . + CDS 10935 - 12659 2082 ## COG1376 Uncharacterized protein conserved in bacteria + Term 12685 - 12730 9.0 - Term 12678 - 12713 7.2 10 9 Op 1 8/0.000 - CDS 12800 - 13984 1857 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 11 9 Op 2 . - CDS 14076 - 15143 538 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 15283 - 15342 2.6 12 10 Op 1 . - CDS 15535 - 16320 372 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 13 10 Op 2 44/0.000 - CDS 16313 - 17104 367 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 14 10 Op 3 49/0.000 - CDS 17101 - 17937 797 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 15 10 Op 4 38/0.000 - CDS 18000 - 18977 1025 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 18991 - 19028 8.2 16 10 Op 5 . - CDS 19042 - 20661 2585 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 20720 - 20779 2.2 + Prom 20698 - 20757 2.3 17 11 Tu 1 . + CDS 20787 - 21557 1021 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor + Term 21659 - 21707 -0.7 18 12 Tu 1 2/0.000 - CDS 21617 - 23038 1530 ## COG1653 ABC-type sugar transport system, periplasmic component - Term 23065 - 23103 9.9 19 13 Op 1 2/0.000 - CDS 23154 - 24497 2346 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 24664 - 24723 5.1 - Term 24732 - 24771 4.4 20 13 Op 2 . - CDS 24829 - 26181 2383 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 26248 - 26307 1.9 + Prom 26194 - 26253 3.7 21 14 Tu 1 . + CDS 26341 - 28041 1966 ## COG3534 Alpha-L-arabinofuranosidase + Term 28093 - 28135 10.1 - Term 28074 - 28126 5.1 22 15 Tu 1 . - CDS 28161 - 29198 932 ## COG1609 Transcriptional regulators - Term 29226 - 29270 10.4 23 16 Op 1 . - CDS 29299 - 31374 2726 ## COG1874 Beta-galactosidase 24 16 Op 2 . - CDS 31400 - 31495 100 ## 25 16 Op 3 38/0.000 - CDS 31566 - 32573 1136 ## COG0395 ABC-type sugar transport system, permease component 26 16 Op 4 . - CDS 32629 - 33555 976 ## COG1175 ABC-type sugar transport systems, permease components - Prom 33595 - 33654 3.8 + Prom 33552 - 33611 4.5 27 17 Op 1 . + CDS 33801 - 34787 894 ## COG1609 Transcriptional regulators 28 17 Op 2 . + CDS 34878 - 35039 154 ## BLJ_0514 hypothetical protein 29 18 Op 1 . - CDS 35075 - 35839 649 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 30 18 Op 2 . - CDS 35853 - 37745 2693 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Term 37887 - 37923 6.5 31 19 Op 1 34/0.000 - CDS 37951 - 38781 249 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 32 19 Op 2 31/0.000 - CDS 38798 - 39793 1569 ## COG0765 ABC-type amino acid transport system, permease component - Prom 39849 - 39908 3.3 33 19 Op 3 9/0.000 - CDS 39924 - 40868 1704 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 40920 - 40979 4.4 - Term 40947 - 40971 -1.0 34 19 Op 4 . - CDS 41079 - 42035 1819 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 35 20 Tu 1 . - CDS 42198 - 42674 922 ## COG0691 tmRNA-binding protein - Term 42770 - 42810 9.9 36 21 Tu 1 . - CDS 42839 - 44200 1664 ## COG3942 Surface antigen - Prom 44227 - 44286 1.6 - Term 44224 - 44270 6.4 37 22 Op 1 28/0.000 - CDS 44303 - 45226 1305 ## COG2177 Cell division protein 38 22 Op 2 4/0.000 - CDS 45238 - 46392 1662 ## COG2884 Predicted ATPase involved in cell division 39 22 Op 3 . - CDS 46401 - 47525 1851 ## COG1186 Protein chain release factor B 40 23 Op 1 . - CDS 47760 - 47891 94 ## 41 23 Op 2 . - CDS 47908 - 49389 1262 ## BLD_0943 DNA polymerase III epsilon subunit 42 23 Op 3 . - CDS 49386 - 50039 905 ## COG0242 N-formylmethionyl-tRNA deformylase 43 23 Op 4 . - CDS 50064 - 51449 2305 ## COG1109 Phosphomannomutase 44 24 Op 1 . - CDS 51643 - 51882 192 ## BLD_0946 hypothetical protein 45 24 Op 2 . - CDS 51898 - 52230 270 ## BL1189 hypothetical protein 46 25 Tu 1 . - CDS 52429 - 53370 1168 ## COG0730 Predicted permeases 47 26 Op 1 . - CDS 53548 - 56157 4258 ## COG0308 Aminopeptidase N 48 26 Op 2 9/0.000 - CDS 56199 - 58049 2657 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 49 26 Op 3 6/0.000 - CDS 58134 - 59039 1107 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 50 26 Op 4 . - CDS 59202 - 59957 1170 ## COG0289 Dihydrodipicolinate reductase - Prom 59984 - 60043 3.0 51 27 Tu 1 . - CDS 60293 - 61549 1450 ## COG0477 Permeases of the major facilitator superfamily 52 28 Op 1 5/0.000 - CDS 61825 - 65856 2604 ## COG0210 Superfamily I DNA and RNA helicases 53 28 Op 2 . - CDS 65853 - 70163 1809 ## COG0210 Superfamily I DNA and RNA helicases - Prom 70196 - 70255 2.7 + Prom 70182 - 70241 2.1 54 29 Tu 1 . + CDS 70295 - 71716 1224 ## COG0515 Serine/threonine protein kinase 55 30 Op 1 . + CDS 71883 - 77867 5444 ## BL1199 fibronectin type III domain-containing protein 56 30 Op 2 . + CDS 77878 - 79251 1553 ## COG0714 MoxR-like ATPases 57 30 Op 3 . + CDS 79276 - 80499 883 ## BL1200 hypothetical protein 58 30 Op 4 . + CDS 80496 - 83009 2055 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 59 30 Op 5 . + CDS 83006 - 83938 681 ## COG0631 Serine/threonine protein phosphatase 60 30 Op 6 . + CDS 83965 - 84480 797 ## BLD_0962 hypothetical protein 61 30 Op 7 . + CDS 84496 - 85128 759 ## BLD_0963 forkhead domain protein + Term 85142 - 85169 -0.8 - Term 85235 - 85282 3.1 62 31 Op 1 58/0.000 - CDS 85287 - 89324 6632 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 63 31 Op 2 . - CDS 89492 - 93055 833 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 64 32 Op 1 . - CDS 93210 - 93932 556 ## BLD_0966 hypothetical protein 65 32 Op 2 . - CDS 93996 - 94982 904 ## COG1194 A/G-specific DNA glycosylase - Prom 95049 - 95108 2.2 66 33 Tu 1 . + CDS 95003 - 95665 693 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 95846 - 95907 24.0 - Term 95838 - 95891 11.8 67 34 Op 1 9/0.000 - CDS 95972 - 97336 2151 ## COG2848 Uncharacterized conserved protein 68 34 Op 2 . - CDS 97472 - 97744 417 ## COG3830 ACT domain-containing protein - Term 97757 - 97805 5.1 69 35 Op 1 8/0.000 - CDS 97827 - 99077 1938 ## COG0153 Galactokinase 70 35 Op 2 . - CDS 99094 - 100344 2135 ## COG1085 Galactose-1-phosphate uridylyltransferase 71 35 Op 3 . - CDS 100349 - 101053 806 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 101152 - 101211 3.2 72 36 Tu 1 . + CDS 101507 - 102658 1436 ## COG0167 Dihydroorotate dehydrogenase + Term 102705 - 102748 4.0 73 37 Tu 1 . - CDS 102826 - 104199 1309 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 104258 - 104317 4.9 - Term 104261 - 104302 12.2 74 38 Op 1 . - CDS 104391 - 106706 2208 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Term 106775 - 106803 -1.0 75 38 Op 2 . - CDS 106810 - 107529 778 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 107568 - 107627 3.0 - Term 107676 - 107732 -0.6 76 39 Tu 1 . - CDS 107768 - 108853 756 ## COG0095 Lipoate-protein ligase A - Term 108859 - 108902 3.3 77 40 Op 1 . - CDS 108911 - 109942 1728 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 78 40 Op 2 . - CDS 110007 - 112523 2342 ## COG1770 Protease II 79 40 Op 3 . - CDS 112584 - 113915 1299 ## COG4850 Uncharacterized conserved protein 80 40 Op 4 . - CDS 113982 - 114389 656 ## COG0509 Glycine cleavage system H protein (lipoate-binding) 81 40 Op 5 . - CDS 114421 - 115713 1303 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 82 40 Op 6 . - CDS 115723 - 116580 847 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 83 41 Tu 1 . - CDS 116708 - 117331 808 ## BLD_0987 hypothetical protein 84 42 Op 1 . + CDS 117596 - 117970 702 ## COG0526 Thiol-disulfide isomerase and thioredoxins 85 42 Op 2 . + CDS 118040 - 119035 1289 ## BLD_0989 hypothetical protein + Prom 119085 - 119144 4.6 86 43 Op 1 . + CDS 119164 - 119589 394 ## gi|239622415|ref|ZP_04665446.1| predicted protein 87 43 Op 2 . + CDS 119579 - 119794 156 ## COG1476 Predicted transcriptional regulators + Term 119991 - 120041 1.3 + Prom 120007 - 120066 4.3 88 44 Tu 1 . + CDS 120116 - 120625 628 ## Blon_0677 hypothetical protein + Term 120679 - 120717 7.7 + Prom 120691 - 120750 1.6 89 45 Tu 1 . + CDS 120807 - 121367 494 ## COG0394 Protein-tyrosine-phosphatase + Term 121539 - 121578 -0.6 - Term 121269 - 121302 -0.5 90 46 Tu 1 . - CDS 121442 - 121558 89 ## - Prom 121581 - 121640 2.7 + Prom 121545 - 121604 6.8 91 47 Tu 1 . + CDS 121645 - 122079 895 ## Blon_0676 hypothetical protein + Prom 122316 - 122375 4.3 92 48 Tu 1 . + CDS 122428 - 123651 1243 ## COG1373 Predicted ATPase (AAA+ superfamily) - Term 124021 - 124071 8.6 93 49 Op 1 13/0.000 - CDS 124180 - 125079 1283 ## COG1209 dTDP-glucose pyrophosphorylase 94 49 Op 2 11/0.000 - CDS 125122 - 126210 1010 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 95 49 Op 3 . - CDS 126217 - 127239 1050 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Prom 127421 - 127480 2.9 96 50 Tu 1 . + CDS 127522 - 127587 114 ## 97 51 Tu 1 . + CDS 127894 - 128235 206 ## BAD_1369 ISSdy1_ transposase OrfB - Term 128043 - 128076 1.0 98 52 Tu 1 . - CDS 128270 - 128617 120 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 Predicted protein(s) >gi|316915941|gb|ADCN01000022.1| GENE 1 17 - 445 199 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 2e-14 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK >gi|316915941|gb|ADCN01000022.1| GENE 2 573 - 2663 2435 696 aa, chain - ## HITS:1 COG:Cgl2216 KEGG:ns NR:ns ## COG: Cgl2216 COG0358 # Protein_GI_number: 19553466 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Corynebacterium glutamicum # 2 691 8 631 633 429 37.0 1e-120 MIKKEDVEKVRAAADLYDIVSATVTLKPSGTGTFVGLCPFHDEKTGSFNVRPSLGVWHCF GCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLLEAC EEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQK EILDAGLARQGQRGIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQL YRKTQVLYGIDLAKSAIVKKRQVVIVEGYTDVMAMHLAGIDTAIATCGTAFGAEHAKIVR RLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHAFGLDSAFLSQTFVAV ADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFDLTYTPGQVGAMKAVAPLV AQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRDEDAYAPKRRFERDEPRVE PGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAVLIQVPRAIDRTMFGQLTI DHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPMLNQVINELAVMPLPLPGD DGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLTRLLDMGFMRQIGLAKRRM AQLPDGEEKITLLGQITRMETARKDLQAQIYGNTVG >gi|316915941|gb|ADCN01000022.1| GENE 3 2836 - 4143 1460 435 aa, chain - ## HITS:1 COG:ML0831 KEGG:ns NR:ns ## COG: ML0831 COG0232 # Protein_GI_number: 15827365 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Mycobacterium leprae # 23 424 13 416 429 299 42.0 8e-81 MCAYAWNMETTLDGEQVLSDEGYSAFDEERWAPEPPKSKSRTAFERDRARLIHSSALRRL GAKSQILIAGTDDFARTRLTHTLEVAQIGRQIGALLGCDPDVVDCACLAHDLGHPPFGHN GERALADIASNIGGFEGNAQTMRILTRLEPKIFHPDGRSAGVNLTRAALDAAVKYPWTLA EADRHPKGERSKKFCVYPDDEPVFRWLKIGAPQAAKPMECQIMDLSDDIAYSVHDVEDSI ATGAFDPIVLADPKMLDHIIEQTRAWYGAKWDADKLLAAFMRLRREHLFPAHFNGSRESL AQLKNITSDLIGRFCWSVETATRDTYGPGPLTRYSSNIVIPENTNYEIVALKGIAVYFVM APREREPFHQEELKIVSDLVDVLMADSPLPSDALESQFLADWNESTNDNERLRVAIDQVA SLTDNSALALHSILC >gi|316915941|gb|ADCN01000022.1| GENE 4 4315 - 5667 1897 450 aa, chain - ## HITS:1 COG:MT3532 KEGG:ns NR:ns ## COG: MT3532 COG0787 # Protein_GI_number: 15843019 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Mycobacterium tuberculosis CDC1551 # 27 432 36 405 408 242 40.0 9e-64 MNAAPEIAFSSEQGKANYAAARRQYPAQAIVDLKTMRDNMAHLVSVVGGPASGTAVMGVV KADAYGHGLLPAALAALAGGATWLGTAQSHEALLLRKLGIGPDRCHILTWVYNGTEVPFD ELIAADIDVSVGSLPGIDAVAAAARKLGKPARVHVKVDSGFGRNGFTPAGFDAALAKLVP LAKEGVLHIVGQWSHLAVADSPDVPEFVSSTDRQIETFKDFTRRMEQAGIPPEIRHLANT AATLDRPEIHFELTRPGIGLYGYEPDPAMGTPRDWHLTPAMRLQAQLGTVKDVEAGHGIS YGRTYLTPDNTSTAIVPLGYADGIHRSASGFDMEGAKHVEKPGGPVRIMTTEGPKLYRVC GRVCMDQFIVDLHGSAAELGVHEGDTVELFGPGRGEDYVEPTADDWARAADTISYEIFTC LRNRIPRLYEHAAEVLPAADLAKLDPATLL >gi|316915941|gb|ADCN01000022.1| GENE 5 5862 - 7322 2459 486 aa, chain + ## HITS:1 COG:RSc1588 KEGG:ns NR:ns ## COG: RSc1588 COG0531 # Protein_GI_number: 17546307 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Ralstonia solanacearum # 1 483 1 475 476 466 53.0 1e-131 MDLFRKKSVDQLVAESTPLKRTMRTFDLTMLGIGAIIGTGIFVLTGKGALTAGPALSVSF LLAAVCCGFAGLCYAEFAAMAPVSGSAYSYAYLAFGELIAFVIGWDLILEYALQAATVSA GWSGYFNKLLEGFGLHLPVELTAAYGTNPDVTTYFNLPGFVIVLIITWVLSIGINQTKRT NDVMVLIKLAIIVLFIVCAVWYVKPSNWQPFSPYGIYTFQPGSTQPYGIVPAASIVFFSF IGFDAVSSSAEETINPNKTLPRGILLSLAVSTVLYVIMTLIMTGVVPYKEFAKYIDAPVA GVILETGMNWLAVIVNLGALIGMTTVMLVQLYGQSRICYAMSRDGLFPKFFGHVHEKYRT PFKGTWFFGLLTAFAGGFININVLFELVNIGTLSAFIIVSAGILWMRKTQPNAPRGFRAP GVPVTPILAIVFCFVLIAGLNWETWVRFAVWFGLGLIVYFGYSRKRSKLGLEQKAGADAK VAATED >gi|316915941|gb|ADCN01000022.1| GENE 6 7517 - 8002 628 161 aa, chain - ## HITS:1 COG:L36177 KEGG:ns NR:ns ## COG: L36177 COG0454 # Protein_GI_number: 15674159 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 2 157 10 164 169 98 40.0 4e-21 MRDLPQMQKIYARARALMAANGNPTQWGNEFPRESMIEDDIANQRTMLLVDTCNGHERIL AQFALCPGEDPTYAKIDGAWLDNDAYVTIHRIAASGLVRHAARDCIRWALKHYGNVRADT HPNNKAMQHVLESSGFARCGLIQLLDRPVDTTRIAYQRHEW >gi|316915941|gb|ADCN01000022.1| GENE 7 8214 - 8708 900 164 aa, chain - ## HITS:1 COG:SP0340 KEGG:ns NR:ns ## COG: SP0340 COG1854 # Protein_GI_number: 15900270 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Streptococcus pneumoniae TIGR4 # 6 164 2 160 160 230 65.0 1e-60 MAEETAEKPVVESFQLDHTKVKAPYVRYIDTETGPHGDVISNYDLRLTQPNKQAIPTGGL HTIEHTIAVLLRERIPGYIDCSPFGCRTGFHLLTWGTHPTEEVAKALKESLEFIAYKATW DDVPATTEKSCGNYRDHSLFTAKEWAKQILEEGISSDPFERKVV >gi|316915941|gb|ADCN01000022.1| GENE 8 8821 - 10776 2055 651 aa, chain - ## HITS:1 COG:CAC2687 KEGG:ns NR:ns ## COG: CAC2687 COG0514 # Protein_GI_number: 15895945 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Clostridium acetobutylicum # 11 645 9 588 714 481 38.0 1e-135 MTAHQAALEALTRYFGYDSFRPGQQGIVEALLAGRDVLGVMPTGAGKSVCYQIPAALSPG MTLVISPLISLMRDQVDALNDLGLPAAFINTTQTPDEQAMVFAQAAAGQIKLLYVAPERL ETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIAGLPQRPPVGAFTATAT ERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVARYVADHPDESGIVYC ATRKTTEALTDTLNQIGHPAVAYHGGMSPDAREAAQRDFITDKVPVVVATNAFGMGIDKS NVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDNDYENERLTP EEQEIVRQSKRRLLDGMVGYCRTTDCLHRYMTRYFGQELSPNAGSTAGEDIAADSSQSGK CGACSNCESTFETIDVTRVAQAISRCVHDVGQRVGSGKIVKILRGSRAQDLAWLNPERMP TFGMLKDVNEARVRDVLSQMATDGYLSIAEGRMPIVMFGARAAETAAPDFHYEIKRVERK SEAAGSGRSGGVADTADSANVPGDALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIV FSDKTLRDMARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQAIASFNAGSAS >gi|316915941|gb|ADCN01000022.1| GENE 9 10935 - 12659 2082 574 aa, chain + ## HITS:1 COG:all4768 KEGG:ns NR:ns ## COG: all4768 COG1376 # Protein_GI_number: 17232260 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 425 547 59 169 171 75 35.0 3e-13 MANDTFSFSSPDDQETAVLQPVATDGLFASAATGTATPQQSDNGTNNHADNTAYVGEHVM ASTTAKSHGKAARIAIITIFAVLLAALIAYFFVGRWYFQDKAAPGVHLGNVSVMGQTREE LANTVKQRLNNTTVTFTAEGNSVKASLKDLGVTVDTDKTVDALLNAKTGDVAKLNIFDQP HIALTATRDKETAEQFVTAGLVDEADRAQIATVVYNKSTKQFDYTAGQDGKGPDINVVNA AVKEAVATPGENATVPVKLQTAKNPIDDASAQQTQFDANARLGLKLTVDNGVNKSVTIPA DTIASFLKPTVNKAGGTMSLVVDRDAITKYVTSDSVTKELTVPKVTREVYITPKDEGGVE IGADKTLGVDGIEVTGAGDAPERLATAIEQNQSTDSTVAVKDSPYDVKQVEVPHNFDTAN GDKWVHVDLTNQTATAYQGTTVVKKFNIASGKPTADGSMLSDTGTFYVYLKYESQTMVGE GYNQPGTPWISYYNGGEALHGVPAYMWGEHPIYVQQGIPGSHGCINMQVADAKWMYDFAT IGTRVVVDGTTPTSGQALRPAGADATGWQGGNAS >gi|316915941|gb|ADCN01000022.1| GENE 10 12800 - 13984 1857 394 aa, chain - ## HITS:1 COG:ML2394 KEGG:ns NR:ns ## COG: ML2394 COG0626 # Protein_GI_number: 15828287 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Mycobacterium leprae # 1 392 1 388 388 444 58.0 1e-125 MSAEYNAKFANTDIATRAIHAGQEPDPTTGAVVTPIFATSTFKQDGVLGLRGGHDYSRSI NPTRTSFDEQLAAVEGGKYALSFSSGLAAIDVLLRSTIKPGDNILLGNDVYGGTYRLLSK VFVPWGVGLDVVDITDLKAVETALASKHYQYVWVETPSNPLLNITDIAATAEVAHKYGTK VAVDNTFASPALQHPLADGADVVVYSTTKYIGGHSDVVGGAVVVNDEETREKVAFLQNAA GAVPSPFDSWLDIRGLKTLDLRVKRHSANALKVAEWLESQPSDVIERVWYPGLESHPGHE IAARQMHGGFGGIVSVQLAAGAEAAKHFVDHTQIFTLAESLGGVESLIEVPAAMTHASVA GTTLQVPANLVRISVGIENADDLIADLKQALDRI >gi|316915941|gb|ADCN01000022.1| GENE 11 14076 - 15143 538 355 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 309 1 299 308 211 41 1e-53 MTIHNSLAELIGNTPLVKLNHIPQAAGVKATIAVKVEYFNPGGSSKDRIAERIIDAAEKS GQLKPGGVIVEPTSGNTGVGLALVAQQRGYRTIFTLPDKVSESKRAVLRAYGAEVIVTPT DAGPDDPRSYYQVAERLANTIPGGFRPNQYDNPNGPLSHYYTTGPEIWEATDHKVTHFVA GIGTGGTISGTGKYLKEASNGAVKVIGSDPEGSIYSASSRDEVHQYDIEGAGEDFYPKAF DRNITDDIVRVSDAEAFEMTRRLAGEEALLVGGSSGMAVASAIKYALANDLDENQIVVVL APDSGRSYLEKIFNDDWMRANGYGDIVERTSKPSLAEQYLNGTPSDEGAADGLHN >gi|316915941|gb|ADCN01000022.1| GENE 12 15535 - 16320 372 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 30 258 40 264 329 147 37 2e-34 MSNSSVPLLSAHSITKSFGPRTARHQVLFDVSADVHAGECLAVIGGSGSGKSTLTRIMLG LESADSGSVEYESQSIVGGRKSPGFAALRRESGLVFQDPFSSLDPRWRVAKSVAEPLSLQ RRDLNNTDIDERVAAALTMAGLEPADFLNRYPIDLSGGQAQRVVIARAIINEPKVILADE PMSAIDVAARIQILDTFAAIRAARPSTAIIMVSHDLGVVQHIADRILVLHDGRLEETGST AEVLGNPQSDYTRQLIEAASL >gi|316915941|gb|ADCN01000022.1| GENE 13 16313 - 17104 367 263 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 12 248 32 264 329 145 37 7e-34 MSVDVRGLKITIGGKPIVSDADMTIADGERVGLIGSSGSGKSMIAKAMLGLLPLTAVTNG SIDMGGTEIIGASERALADLRGRYVGAVFQNPAASLNPVMTVAQQIALPLRLHYDLTKVE RADRVNALLSKVGLDLDMAGKYPHELSGGQQQRVGIATALITSPRFIIADEPTTALDSIT QRQIVDLLTSLVDDAGASMLFITHDFSVLARATTRCYVLDAGRIVESGPTADLLAAPTTP QAQRLVAAAQTLTLHTPKEDSHE >gi|316915941|gb|ADCN01000022.1| GENE 14 17101 - 17937 797 278 aa, chain - ## HITS:1 COG:BH0030 KEGG:ns NR:ns ## COG: BH0030 COG1173 # Protein_GI_number: 15612593 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 5 265 34 297 301 141 32.0 1e-33 MWRRAEGKFALIVLALWLLIAIVSLFWTPQSLWATDGYHVWAKPSAEHWLGTDGTGADVF SWLLAGSHTNLVIVLLTVVASMAWGLLLIAAMVARNAALASSSVVVVDALISVPTVLIAL ILAVPLGASIAVIVIACGFGYGLNLARVARPAALLAARSSYVESALANGASGWRVLISHV MPNILPVLAVQLSLSAGTAVLAESGLTYLGIGVPSGVPSWGHSLATSVKLINVFPLTVVW PGLIVTVVVVALNIFGDVLRDAIDPVTNPALREIGGER >gi|316915941|gb|ADCN01000022.1| GENE 15 18000 - 18977 1025 325 aa, chain - ## HITS:1 COG:AGl3101 KEGG:ns NR:ns ## COG: AGl3101 COG0601 # Protein_GI_number: 15891665 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 315 2 312 313 174 33.0 3e-43 MRFVLKRLALFVVALFGLSVVVFAALRILPGDVASVMAGVNSPPERVTQLREQLGLNRPL IAQYFDWMSALARGDFGTSILTGRSVTSLVGARASITFPLIILALLIALVIGLPLGCAAV LARSATVRAVFHVLAIVGGAVPALWGGLLLILLFGRGVGLLDVFPSQGFPLDGWGAPGSA ISALVLPAVSVGIIVGASLMRYTRAALGDLASSGYIDMARSCGMTRTQAVLRVGLRLATP QLVSVIGLTFASMVTGVMVIENLFALPGIGNGLVTDVGNRDLIAVQSELFLLAAFFLTVG LVVDLFHRVLDPRLKTATAITEVTA >gi|316915941|gb|ADCN01000022.1| GENE 16 19042 - 20661 2585 539 aa, chain - ## HITS:1 COG:Cgl2268 KEGG:ns NR:ns ## COG: Cgl2268 COG0747 # Protein_GI_number: 19553518 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Corynebacterium glutamicum # 73 507 39 466 503 207 31.0 5e-53 MSQDNGAHIEDGATTDASLASRAKNPKKNGPKWWLISLIAVIVAVAVVIGVTLAFGGKKD DKSASSSNQYADTVTIGLKLAPTNLDIRNTAGSALDQILIGNVYEGIVARDSKNQVAPAI ASSWETSKDGLTYTFHLNKNMTFSNGDKLDAEDVAWSINELIAKGYHDADALAAVSKVEA KDADTAVITLKTPNSNLLWTLTGRAGLVFDKDAKYDLKTQAVGSGPYTVAKFVENSSITL KANEKYWGKNKAKTPTVVVKYLADDNAAVNALKSGDVQVLAPITENLAEPFKSDSAKYTV KAGNGTDKFVLGFNNASGSKLADKRIRQAIRYAINHKELIASRGGADKALGGPIPSLDPG YEDLTNLYPYDQNKAKSLMAEAGYSTDKPLQLTLTYANIYGTELGDQLRSQLKPLGIDLK VNVVEFSTWLQDVYTNHTFDISLVDHNESHDFASWTDPTYYFGYDNKNVTKLYNEGVAAT SDKERDAKFAAAAKLVSEDAPADWLFNYRITTATAKGVEGFPFDLNQTVLPLYNVTYTK >gi|316915941|gb|ADCN01000022.1| GENE 17 20787 - 21557 1021 256 aa, chain + ## HITS:1 COG:lin0253 KEGG:ns NR:ns ## COG: lin0253 COG1521 # Protein_GI_number: 16799330 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Listeria innocua # 1 254 1 253 259 208 38.0 1e-53 MLVAVDIGNTNIVLGFLDGDAIAGTYRITTKANHTSDEYGLFLTEFLRMSGFQPSDVDDV IICSVVPKVMHSFRSSIVKFLDIDPMVVGPGIKTGMNVRVDDPKSLGADILADCAGAYYE YGGPVLVADFGTATTFTHVSDKGVVDSGVITTGIRAGAAALWGDTAQLPEVEITRPDTIL GTNTKTCMQAGLYYTFLGGVERTIRQFRRELGGEDFKVITTGGLGRVFENDTELIDVYDP DLIFKGMAHIYSRNVK >gi|316915941|gb|ADCN01000022.1| GENE 18 21617 - 23038 1530 473 aa, chain - ## HITS:1 COG:BH1924 KEGG:ns NR:ns ## COG: BH1924 COG1653 # Protein_GI_number: 15614487 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 8 395 1 392 426 117 25.0 6e-26 MRVIGQRIKRMATIAVTAILSVSLASCGQSTTDNRTEISVWSWEPSMGEVIRRFEKANPD IRVKWTNISGYGNLNTAIQDGYGTPDVAQIEYYALLQYAVSGQLLDLTDKIGSDYSNFFT LGTWSSVQLAGRTYGLPMDSGPMGFFYNEDVFRQAGVDATKIKTWDDYYEAAKKLKEIGV YIAADSGDGSFYDAMVWLAGGQPFHTSADGKTVTIDLDEDAGTQRFTEFWQKMIDEGLVD TTSATWSDRWKRRVGTGTIASVFSGAWMPSLLLSNVPGAAGLWRVAPMPTYDGQPTNAES GGSALTVLQLTRKPDAAYRFVDFVAHDAQGISARVDGGAFPADYATLNSADFLDKTTITN DRGIEIPYFGGQKFNRVLSEAAEDVSVGYQYLPFEVYARSDFKSTVGQAYEWSGSFHAYQ QRQEAIEMGMKDEKGNPLEPLEKPGKKVSLSDGLAQWQKDLREYGFNQGFTIK >gi|316915941|gb|ADCN01000022.1| GENE 19 23154 - 24497 2346 447 aa, chain - ## HITS:1 COG:mlr6435 KEGG:ns NR:ns ## COG: mlr6435 COG1653 # Protein_GI_number: 13475383 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mesorhizobium loti # 42 332 25 318 423 108 30.0 2e-23 MKFTVAKKAIALTGAVAMLGSVAACGSDTASGKPAQDKDVTEITVWAWEPTLTQVAKDFT KKTGIKVDLKNVGTNTKEYTQLDNAIEAGSGAPDVAQVEYYAIPQYAIKGNLLDITDKTS GYSDFYTPGPWASVQFAGKVYGLPMDSGPMAFFYNKEVFDKAGVDAEQIKTWDQYYDAAK KIHALGDNYYITSDTGDAGFFDSMTWLAGAKPFQTSSDGSEVTVNLTEDKGVKTFTDFWQ KLLDEGLLDTKTAGWSEDWFKGMVDGTIASLFTGAWMPANLANSAADGAGKWRVTQMPTA DGSTTNSENGGSSLAVLASTKKADAAYQFIEYANHGDGVATRVAGGAFPADKASMESDSF KNTTTVKNADGEDVDYFGGQKYNEVLAQAAENVSSDYQFLPYEVKARTIFGDYLGKSYTG DQKLTDGIAAWQKALQDYGKDQGFTVK >gi|316915941|gb|ADCN01000022.1| GENE 20 24829 - 26181 2383 450 aa, chain - ## HITS:1 COG:BH1924 KEGG:ns NR:ns ## COG: BH1924 COG1653 # Protein_GI_number: 15614487 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Bacillus halodurans # 5 401 3 384 426 130 27.0 5e-30 MKFGKKTIALIGAVAMLSSVAACGSTSAGDGGSTGSSDKKVELTVWSWDSTLPRTVKGFE AKNPNIKVKVTNAGTNKDEYNALSNAIEAGSGAPDIAQIEYYALPEYVIRGHLENLSDLG ASDFKDFYTPGTWSSVNINDGVYALPMDSGPMAWFYNKGVFDKAGVDPTQVRTWDDFYEA AKKIRAVDSYITSDSGDAGFFDSMTWLAGATPFETSKDGGTVTINLTGDKNVKTFTDFWQ KMIDEDLIDTKTVGWTDDWNKGLDDGSIASLLTGAWMPYNLLSGAPNGDGKWRIAQMPTA DGSETNSENGGSSLAIVKSDDKDKVAAAYKFMEYACHDAEGIKTRVDGGAFPADNDTLKS DDFLNMTSLTDSDGKAHEYFGGQKFNEELAKAAANVSTGYKFLPFEVYARGKFGDYAGDA YTGKTTLSDAVASWQKDLQDYAKQQGYQVK >gi|316915941|gb|ADCN01000022.1| GENE 21 26341 - 28041 1966 566 aa, chain + ## HITS:1 COG:BH1861 KEGG:ns NR:ns ## COG: BH1861 COG3534 # Protein_GI_number: 15614424 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Bacillus halodurans # 56 559 15 492 500 449 45.0 1e-126 MTTHNSQYSAETTHPDKQESSPAPTAAGTTASNVSTTGNATTPDASIALNADATPVADVP PRLFGSFVEHLGRCVYGGIYEPSHPTADENGFRQDVLDLVKELGVTCVRYPGGNFVSNYN WEDGIGPRENRPVRRDLAWHCTETNEMGIDDFYRWSQKAGTEIMLAVNMGTRGLKAALDE LEYVNGAPGTAWADQRVANGIEEPMDIKMWCIGNEMDGPWQVGHMSPEEYAGAVDKVAHA MKLAESGLELVACGSSGAYMPTFGTWEKTVLTKAYENLDFVSCHAYYFDRGHKTRTAASM QDFLASSEDMTKFIATVSDAADQAREANNGTKDIALSFDEWGVWYSDKWNEQEDQWKAEA AQGLHHEPWPKSPHLLEDIYTAADAVVEGSLMITLLKHCDRVRSASRAQLVNVIAPIMAE EHGPAWRQTTFYPFAEAALHARGQAYAPAISSPTIHTEAYGDVPAIDAVVTWDEQARTGL LLAVNRDANTPHTLTIDLSGLPGLPGLGTLALSKAQLLHEDDPYRTNTAEAPEAVTPQPL DIAMNATGTCTATLPAISWISVEFHG >gi|316915941|gb|ADCN01000022.1| GENE 22 28161 - 29198 932 345 aa, chain - ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 4 297 3 292 333 171 33.0 3e-42 MRGKNRVTMADVAHEAGVSVASVSNFLNKQPYMSEAMAARIAEAIDRLGYKVNSSARNLR SGRTRLLKLVIPDLRQVYFSELAEDILAEARQHGYGVIVESTTNNRARELESIASMGTHS ADGLILSPLMMTVDDIAALDGDYPLVLLGERLFGVNAPHVVIRNREGAAAATYHLLDAGC RRIAVVGAVPHPEHDFSSGSIRTHGYREALAARGIPCDDSLLIETQGWGSADGLVAVDTM LESGLQFDAVFALNDLLAWGVLRELRERGVAVPDDVRVIGFDDVEESAYMVPSLSTVNPG REAIARLAVESIIQQVESGSRAPAQTIEAPYSLSLRESSPALARA >gi|316915941|gb|ADCN01000022.1| GENE 23 29299 - 31374 2726 691 aa, chain - ## HITS:1 COG:BH3701 KEGG:ns NR:ns ## COG: BH3701 COG1874 # Protein_GI_number: 15616263 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase # Organism: Bacillus halodurans # 17 690 7 671 672 402 35.0 1e-111 MERKEFKWPQPLAGNKPRIWYGGDYNPDQWPEEVWDEDVALMQQAGVNLVSVAIFSWAKL EPEEGVYDFDWLDRVIDKLGKAGIAVDLASGTASPPMWMTQAHPEILWVDYRGDVCQPGA RQHWRATSPVFLDYALSLCRKMAEHYKDNPYVVSWHVSNEYGCHNRFDYSEDAERAFQKW CEKKYGTIDAVNDAWGTAFWAQRMNNFSEIIPPRFIGDGNFMNPGKLLDWKRFSSDALLD FYKAERDALLEIAPKPQTTNFMVSAGGAGIDYDKWGYDVDFVSNDHYFTPGEAHFDELAY SASLCDGIARKNPWFLMEHSSSAVNWRPINYRVEPGELVRDSLAHLAMGSDAICYFQWRQ SKAGAEKWHSSMVPHAGPDSQIFRDVCELGADLNKLADEGLLSTKLVKSKVAVVFDYESQ WATEHTATPTQEVRHWTEPLAWFRALADNGLTADVVPVRGPWDEYEAVVLPSLTILSEET TRRVREYVANGGKLFVTYYTGLVDDKDHVWLGGYPGSIRDVVGVRVEEFAPMGNDFPGAM DHLDLDNGTVAHDFADVITSVADTAHVVASFKADKWTGFDGAPAITVNDFGDGKAAYVGA RLGREGLAKSLPVLLEELGIETSAEDDRGEVLRVERADETGENHFVFLFNRTHDVAVVDV EGEPLVASLAQVNESEHTAAIQPNGVLVVKL >gi|316915941|gb|ADCN01000022.1| GENE 24 31400 - 31495 100 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQIFALLRIVQVPPCVSVQREEFIPADADYR >gi|316915941|gb|ADCN01000022.1| GENE 25 31566 - 32573 1136 335 aa, chain - ## HITS:1 COG:lin1843 KEGG:ns NR:ns ## COG: lin1843 COG0395 # Protein_GI_number: 16800910 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 62 334 15 276 276 148 33.0 2e-35 MSAATTSAAGRLTDAELKAQEKAARKAEKARQKRIAADEAAERKRSAKAGFANVNNPRRS TLLTVLCAVFAVYCLFPFVYLLINATKTQADFTSTFGLGFGKTFALFDNIATVFSYQDGI FARWLFNTILYVVVGAGGATLLAIMGGYALAKFRFPGRNAVFVVIIGAISVPGIALAVPQ FLLFAKLGLTNTPWAMIIPSLISPFGLYLMWIFSEQAVPQELLEAARVDGASEFRTFWQI SLPLLAPGIVTTALFTIVATWNNYFLPLIMLKDADWYPLTIGLNQWKDQASTAGGQAIQN LVITGSLITIIPLVIAFLCLQKYWQSGLAAGAVKE >gi|316915941|gb|ADCN01000022.1| GENE 26 32629 - 33555 976 308 aa, chain - ## HITS:1 COG:BH2725 KEGG:ns NR:ns ## COG: BH2725 COG1175 # Protein_GI_number: 15615288 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Bacillus halodurans # 27 294 11 280 290 127 33.0 2e-29 MASADIAAAPVHSGKARVNKHKADWRGWKFMWPFAVVFVFVFIVPIVYAVYISFFKKQMI GGTKFVGFENYVRLLGDGQFWSSVGRVALFTCVQVPIMLCLSALMALALDSMKLHGTKFF RISTFLPYAVPAVVSTLIWGFVYGAKYGLVGSLNDFLGTDIDVLAPSVLLASIGNIVTWE FTGYNMLIFYSSLSTIPHSLYEAASIDGASEWQIVKSIKLPELRGSLAITVIFSIIGSFQ LFNEPSILQNMVPGNAITTYYTPNMYAYNLSFSGNQSNYAAALAIVMAVITMAIAYIVQL NSLKEQMK >gi|316915941|gb|ADCN01000022.1| GENE 27 33801 - 34787 894 328 aa, chain + ## HITS:1 COG:BH2313 KEGG:ns NR:ns ## COG: BH2313 COG1609 # Protein_GI_number: 15614876 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 1 321 3 324 337 138 31.0 2e-32 MQDVAKAADVSPQTVSRVANGSDAVKPETRQRVEAAMERLGYRPNYAARALKHGRFQDIG VVMFNTATFGNARILDSIVANAADDDYSVTIQTMRHGAERTLSAAIDRMQRQPVDGVIVV LEERISDFVGYKPPRELPVVLICESAADHCPTVDADQYGCSTAIVDYLMSKGHKTVYHIA GPSTSRAAESRARGWREALEQMGARVPSMYIGDWCADSGYQAGVALAHDPDCTAIYAAND QMAYGAMLGLQSVGKRVPEDVSIVGVDDSLVDMVPRLNLTTMKLRFDDIGATAFSMVRRQ CEGEKIPVGVKTVIPPELIERGSVLDIS >gi|316915941|gb|ADCN01000022.1| GENE 28 34878 - 35039 154 53 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0514 NR:ns ## KEGG: BLJ_0514 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 53 24 76 76 100 98.0 2e-20 MAQRLGVSRRWLIEFEHARVPNPEFSTILSALTELGLSLDVRKTPQPAELYEW >gi|316915941|gb|ADCN01000022.1| GENE 29 35075 - 35839 649 254 aa, chain - ## HITS:1 COG:Rv3300c KEGG:ns NR:ns ## COG: Rv3300c COG0564 # Protein_GI_number: 15610436 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Mycobacterium tuberculosis H37Rv # 3 248 77 285 305 185 46.0 8e-47 MIDEPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDITPAHR LDRMTAGVLVFVRDPACRGAYQMLFQNRQTVKVYECLAPCRPISRPRFGTIMQVEPPRPF PLLRRSHITKEHGTMAAFEEPGLANAETLIERGDLCFPPADGRWREAPEGGPHPGNHPIC RYTLHPRTGKTHQLRVHMNSLGLPIVGDDFYPRIQTRPYDDFSQPLQLVARMLRFTDPIT GEKREFVSRVPLKI >gi|316915941|gb|ADCN01000022.1| GENE 30 35853 - 37745 2693 630 aa, chain - ## HITS:1 COG:Cgl2219 KEGG:ns NR:ns ## COG: Cgl2219 COG0449 # Protein_GI_number: 19553469 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Corynebacterium glutamicum # 1 630 3 625 625 760 60.0 0 MCGIVGYAGNIETACGKPLEVCLQGLERLEYRGYDSAGVALTAPGMDKVVVRKKAGRLKN LVEDIERKPMPLATVGIGHTRWATNGEPSDVNAHPHTSMDGKVAIIHNGIIENASQLRLD LQAEGYRFASATDTEVAAKLLGKIVDKIIADEGKPDLFKAVRRMARMLEGAFTILATDCR QPDIVVGARHDSPLVVGLGEGENFLGSDVAAFVAYTKRAMEVDQDQAVCVSADKVIVTDF DGNVVENPKTYTVDWDASAAEKGGWDSFMDKEIHEDPAAVQRTLLGRFDANGGITLDEVR IDEHDFKAIDKIIVVACGTASYAGQVAKYAIEHWVRIPVEIELAHEFRYRDPILTPRTLV VAISQSGETMDTLMALRHAREQGSKVLAICNTQGASIPRESDAVLYTHAGPEVAVASTKA FVAQITAAYLLGLYLAQVKGAMFRDEIHQMLDSLKDMPRKIQWVLDTQPKTIQAAAERMV NANSFLFLGRHVGYPVALEGALKLKEIAYTFTEGFAAGELKHGPIALVDEGEPVVFIVPP QRGRNVLHAKVISGIEEVKARGAYIIAVAEQGDPDVERYADVVFWRPACPTLMSPLVDVV PLQLFAMDMAKLKGYDVDKPRNLAKSVTVE >gi|316915941|gb|ADCN01000022.1| GENE 31 37951 - 38781 249 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 39 265 27 252 563 100 30 3e-20 MTTNDITNSAPVVRKAVDGSVIPAVKAVQVHKAFGPLHVLKGIDLTVMPGTVTVILGPSG SGKSTFLRLINQLETLTGGSIEVDGELIGYKHVTKNGQDMLQTLDDKEIAAQRSRLGMVF QRFNLFPHMTALENVMEAPIHVQHQSKKAARDLAVAELQRVGLGDRMDYYPSQLSGGQQQ RVAIARALAMKPEIMLFDEPTSALDPELVGEVLNVMRSLAKEGMTMVCVTHEIGFAREVA DQIVFMDGGVVVEKGGPDIIDHPTEPRFKDFLQHVL >gi|316915941|gb|ADCN01000022.1| GENE 32 38798 - 39793 1569 331 aa, chain - ## HITS:1 COG:Cgl1299 KEGG:ns NR:ns ## COG: Cgl1299 COG0765 # Protein_GI_number: 19552549 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Corynebacterium glutamicum # 8 287 9 282 316 256 51.0 6e-68 MAKKEVDGEGVNIPNRIKALPVKRPGPIVAAVIVVLLAAMLIQGLITNPRLDWPTVWKYL FNENVLEGIRYTLELTVISMVVAIILSVILAIMRKSINPVLRGVSWFFIWFFRGTPVYTQ LIFWGLFAVLIPKISLGIPFTSVEFWSIDSNVVVTAFNAAWIGLALNEAAYLSEIVRAGL EAVDPGQTEAAKALGMNRTLIMRRIVLPQAMRIIIPPTGNETIGMLKTTSLVTAVPFTLE LQFATNAIANRIYKPIPLLLVACFWYLLITSILMVVQSRLEAHFGKGFNARPVGTKGKQP PYDPPYPGKSDGEPKDDVNKINQTTFAGLNA >gi|316915941|gb|ADCN01000022.1| GENE 33 39924 - 40868 1704 314 aa, chain - ## HITS:1 COG:Cgl1300 KEGG:ns NR:ns ## COG: Cgl1300 COG0834 # Protein_GI_number: 19552550 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 1 310 31 329 334 172 34.0 7e-43 MQFNKLKTIAAAALSVAMLFSAAACGTSDKAGDSGSDKGGSSKSVTITSYDVSSVKKDDA IAALLPESVTKDGKLTIGTNPSYAPAEFLDADGKTQIGYDMDLARAMGNIFGLDTEIVSS NFDTIIPAIGSKYDLGIAAFTITKERMESVDFVSYFTAGMGYAVAAGNPKNVDENDLCGL NVAVETGTVEEEAINKTAKQCKADGKKDITIQSSKQQTDATTAVVTGKADVFFADSPVVG YAIAQTDGQLEQLGKDFDEVPNAIAIKKGDSQTTEAVQKAMQKLMDDGTYTKILQHWGVE SGALDKAEINPAVE >gi|316915941|gb|ADCN01000022.1| GENE 34 41079 - 42035 1819 318 aa, chain - ## HITS:1 COG:Cgl1300 KEGG:ns NR:ns ## COG: Cgl1300 COG0834 # Protein_GI_number: 19552550 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Corynebacterium glutamicum # 63 313 79 329 334 138 35.0 1e-32 MSLSKGIQSAAAAALSAAMLIAVAACGTTDSTDTASKSGDSSKDSSSTSIQGFDTSSIQK DDEIAALLPDSVAGDGTLTVGTDTSYAPAEFLAEDGKTPVGFDVDLSKALAAVFGLKENT VSSTFDSIIPSVGSKYDIGISSFTMTKERMEAVDFVTYFKAGSTFVVQKGNPNKVDSSNL CGVKVAVQTGTTQEEEVNKDNEQCKADGKDAIDIQSSKLQTDVTTAVASGKASIFYADST VSAYAIKQTGDTLETLGEDAGGVPEAVAIKKGDTKTAEAVQKAIQKLMDDGTYKKILDTW GVGSGAIDKAEINPADAA >gi|316915941|gb|ADCN01000022.1| GENE 35 42198 - 42674 922 158 aa, chain - ## HITS:1 COG:ML0671 KEGG:ns NR:ns ## COG: ML0671 COG0691 # Protein_GI_number: 15827281 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Mycobacterium leprae # 6 151 8 152 160 148 55.0 4e-36 MPKETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEM WLEGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKDGRVK AEIALARGKKEFDKRQALREEQDKREALRAMRYANMRH >gi|316915941|gb|ADCN01000022.1| GENE 36 42839 - 44200 1664 453 aa, chain - ## HITS:1 COG:SPy2025 KEGG:ns NR:ns ## COG: SPy2025 COG3942 # Protein_GI_number: 15675802 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 346 444 428 523 541 91 50.0 3e-18 MTNVRVIKPALAALVAAAACVGGLAFSSAQPAQADTYSDLINAQNQHAASVQREAELKQQ LAGASQELADKVLELDDLTNNKIVAAQAKVTQANEDAATAQDEADAASGRLSAAQKDKET LEEQIKQTGKDYDDAHAAVAQLARDEMHGSNASDVMSVVTGATSTQDFVNSMQSRDALSR NEANAASSAATSLSTSKNRGERLAAIEKQIAVLKTQADEKAASAQTAAETAQSERDALDK LRQEGEARRDELSSMIDSLDSQSAKQAAQTVLIASQVDSYNRQYQKEQQDAANRVDTGNQ GGTPSTPVTPTPAPTPTPTPTPTVPGGGGSSSGGQGTSNGDYGNAYATGQCTYWAYERRK QMGIGTPSYLGNGGDWWRNAPSYGLRVDHNPQVGAALSFLPGQDGADGTYGHVAVVEAVY GDGTFQISEMNWGGPWNMHHRTLTNLGQYWFVH >gi|316915941|gb|ADCN01000022.1| GENE 37 44303 - 45226 1305 307 aa, chain - ## HITS:1 COG:ML0670 KEGG:ns NR:ns ## COG: ML0670 COG2177 # Protein_GI_number: 15827280 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Mycobacterium leprae # 1 306 1 296 297 130 30.0 4e-30 MRARFILSETWANLTRNLSMLLSLTLVTFISFLFIGASVLTQAQITKAKGDWYDKVEVVV WLCPDGTSQSANCASGKSPSANEITALQKTIRDELNDVVSNIDYVSKQDFYDNTFTKQYP NGEFQGRTLTADDMQDSLWLKLKDPTKYQVVSEVLSGKEGVEDVTDQRQIFDPVFAVLNR ATAVTAVLAGVMVVVAILLTGTTIRMSAASRRTETEIMRYVGASNWTIRLPFILEGTIAS LIGSVLSCLMLSAIVNVFVTGWLAKSVTWIPYVNQLTVLVISPFLVVGAILLSIIASTIS LRRYLRA >gi|316915941|gb|ADCN01000022.1| GENE 38 45238 - 46392 1662 384 aa, chain - ## HITS:1 COG:MT3186 KEGG:ns NR:ns ## COG: MT3186 COG2884 # Protein_GI_number: 15842673 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase involved in cell division # Organism: Mycobacterium tuberculosis CDC1551 # 3 227 1 225 229 276 60.0 5e-74 MALISLDNVSKIYPKGTRPALDDINLDIERGDFVFLVGASGSGKTTLLSLLLREEEATSG EIRVAGNDLRRITNRQVPQYRRSLGFVFQDYKLLNNKTVWENVAFALEVIGTRRSTIKSL VPKVLNTVGLTGKEKNYPHELSGGEQQRVAIARAYVNHPQILLADEPTGNLDPTTSLGIM EVLDAINRTGTTIVMATHNEEIVNSMRKRVVELHNGKIVRDEAHGSYDSALFFPDAEVEA KSDTAHHVLAAATKAIEGSDEPSEGIARLANSVHSGRTGRYGETFAPLEDTLTWGKGIPL DEQAAALESTQAFDPFKDESAATAAVADTSVSSAAEPPAPPEPPAPPEPPAPPANEQSAA EQPADEQSAADQTSDDQPAEGAKE >gi|316915941|gb|ADCN01000022.1| GENE 39 46401 - 47525 1851 374 aa, chain - ## HITS:1 COG:Cgl0778 KEGG:ns NR:ns ## COG: Cgl0778 COG1186 # Protein_GI_number: 19552028 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Corynebacterium glutamicum # 5 371 4 368 368 397 57.0 1e-110 MAEFDFTQAIGEARAKYESIAKALDVDRLKADIKDLETQAAAPGLWDDPENAQKITSRLS AAESQLKRLNSASQRIDDVETLVELGHEEGDQDSLDEAQGEIGEIQKDLDQMEIQTLLDG EYDERSAVVTIRSGAGGVDAADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATF QVDAPYAYGRLSVEGGTHRLVRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRV DTYCSSGPGGQGVNTTYSAVRITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHE EEAKKKKELAGDIKASWGDQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGI RWRHEQRRAAETEE >gi|316915941|gb|ADCN01000022.1| GENE 40 47760 - 47891 94 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNYQDGRQQRENRRRTIVRVVCVVIAVAMLGSLIIPAIYAGL >gi|316915941|gb|ADCN01000022.1| GENE 41 47908 - 49389 1262 493 aa, chain - ## HITS:1 COG:no KEGG:BLD_0943 NR:ns ## KEGG: BLD_0943 # Name: dnaQ # Def: DNA polymerase III epsilon subunit # Organism: B.longum_DJO10A # Pathway: not_defined # 1 493 1 493 493 906 98.0 0 MTDRAWFDAAKGDIPQWAASMPKDADGTTIDWDWVRSLDLAHGVGTIPESTPQSIHDALK ADYATRECLESIIAQCNSAFMTDFDRLIGSYRLPRALAYANRRLNDNINTMLHLGEQQHL WAVSRERRGRATIAVLKPYSGSGPSNDDQGMLDLSGEAGGASAGNTAAENSDVKFPTTVA LDDIQDRTAAILDARAKRRKAQRFQKRAGDAAMARANLSGATSPGGAALPGGAAASGNAT GHHPKPDWRDAYLPGRDVDAVMGIDIETTGIDPARDYIIDVGFEFMNMASPRPAGEPETY AYEQGYYAAGDAYGQSRLAFGVPPENAALGNALIAKLTGIDVRGRSSEAGYRLFDEWPQA QAGLLARLTQQPYVAHNATFEHSWFMLNVAGYAESYRAGRITIIDTLPMSRQWDPGAVPT NEHPYGDNTLDAYAKRQGALDSAHNERHLGLEDSHIMLVAMKHHLAALKAQGKGPWGPAG RAGVGGKSCGRKR >gi|316915941|gb|ADCN01000022.1| GENE 42 49386 - 50039 905 217 aa, chain - ## HITS:1 COG:all2007 KEGG:ns NR:ns ## COG: all2007 COG0242 # Protein_GI_number: 17229499 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Nostoc sp. PCC 7120 # 27 199 4 170 179 94 36.0 1e-19 MFGKNAKVDLELNRDVEQLIKTGGKEKLLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLID TMHTTMLEAPGVGLAAPQIGLGLALAVVEDHVRDDEDDPREIAEFPFHVIINPSYKPTSD KTASFYEGCLSFDGYQAVRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGEL YIDRAEIRSLTTNENLEDYWCDDPVPTEAAEELGFAL >gi|316915941|gb|ADCN01000022.1| GENE 43 50064 - 51449 2305 461 aa, chain - ## HITS:1 COG:CAC0484 KEGG:ns NR:ns ## COG: CAC0484 COG1109 # Protein_GI_number: 15893775 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 1 458 1 446 448 388 49.0 1e-107 MPKMFGTDGVRGLANRDLTARLALDLGDAAVRVLGDAGTQDDQPEGRRRALVGRDTRVSG DFLASALSAGMAAGGFDVIDAGIIPTPGIAFLTSVLNVEMGAVISASHNPMPDNGIKFFA RGGFKLPDQKEDDIEAVLGQDWDRPTGAGVGRVSHDQTTATNLYIDHLVATIAPLNDDKT QPKPLKGLKIVADCANGATSVVAPEALRRAGADVIVINASPDGYNINKNAGSTHPEQLQA MVKATDAVMGVAFDGDADRCLAVDEDGNMINGDQIMGILARAKQREGKLNHDTLVVTVMS NLGLKLALKDMGIKTVETAVGDRYVLEEMLKGDYSLGGEQSGHVINREFATTGDGTLTAL TLCNEVVKSGKSLKELAADFPQLPQTLINVPNVDKKAASTNKRIQDAVAREEELLGDTGR VLLRPSGTEPLVRVMAEAATQAYADEVCTRLAKIVAEELAL >gi|316915941|gb|ADCN01000022.1| GENE 44 51643 - 51882 192 79 aa, chain - ## HITS:1 COG:no KEGG:BLD_0946 NR:ns ## KEGG: BLD_0946 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 79 1 79 79 111 100.0 7e-24 MAETTPVEEMPLGMFIAWLSVFLAVVLFGVALPVIDVRWVVPFVVFAAVLFTGAFAGPFL LVRWLRSRAGVHRSARHAR >gi|316915941|gb|ADCN01000022.1| GENE 45 51898 - 52230 270 110 aa, chain - ## HITS:1 COG:no KEGG:BL1189 NR:ns ## KEGG: BL1189 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 110 4 113 113 219 100.0 2e-56 MLIGGSRREQVLFAGVMKELLAPINNPRYVIIGKEWGVRAYCVSFPCPSVFARRQQDAEI LSRQLDRCLTHCTMVYARTEEGRHTLLRCQTRSFLNRDEQLPHILTTTSE >gi|316915941|gb|ADCN01000022.1| GENE 46 52429 - 53370 1168 313 aa, chain - ## HITS:1 COG:ML0468 KEGG:ns NR:ns ## COG: ML0468 COG0730 # Protein_GI_number: 15827152 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Mycobacterium leprae # 7 303 3 252 260 90 27.0 3e-18 MIAGFSITSLLLILLAGIGAGFVGYAVGASSLVSYPALLAFGIPPVLANTSNTVGVVGTG IGGVMGARKELKGQAVRSITYVVIGAFGGVAGAFLLLKLDPSVFEFAAPVLILLSSLIIA INPRGRMQAKQAAADATAQLKHIEATEATEATEATEAAEATEATEATEATEAAKRATTPT APHRPPEQLVQPMSQDSWWVWLGVAAVAIYSGYFGAGAGTLALAVLDAAKIGPFHKINAL KTLIGTGANISASVVFIIQGAVDWPAAIMLCIGCFIGGYIAPSITRKIPANIMRAAAVIA GIILTIDLGLKTY >gi|316915941|gb|ADCN01000022.1| GENE 47 53548 - 56157 4258 869 aa, chain - ## HITS:1 COG:MT2542 KEGG:ns NR:ns ## COG: MT2542 COG0308 # Protein_GI_number: 15841991 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Mycobacterium tuberculosis CDC1551 # 1 866 1 858 861 617 41.0 1e-176 MPGSNLTRIEAEERKAVIEAPIHYHVDLDLTVGAKNFGSKSFICFNAKPGSSTFLDLIAD EVTSIDLNGKSLDPAVAFQDNRIELTDLKEKNEVTVEAKCRYSNTGEGLHRSVDPSDGNI YLYSQFEVPDARRVYAVFDQPDLKATFDFKVLAPASWIVTSNMPVATIEDDPRETLDGTL GDKPNESTRLWNFEPTPVMSSYLTAICAGPYAEWHTEYLNEDGRTVPMAQYCRQSLAKAF AKDVDYLFDITKKGFAFYAKTWGVPYPYAKFDQIYVPEYNAGAMENIGMVTIRDSYVFES KVTDALAERRVVTVLHELAHMWFGDYVTMRWWNDLWLNESFAEFTSTLATAEATEWHDAW ATFCSGEKSWALRQDQLPTTHPIVAPINDLNDTYVNFDGITYAKGASVLKQLAFYVGRTQ FFEGIHNYLNRHAYSNATLADLLSELEKTSGRDLKAWSAKWLEESGINTIATGLTVNADG TIAELKLTQSAPAEHPVLRPHRLAVGFYNEDAATGKIVRTEQFELDVDGETTIVEAAAGK PRPAFVLVNDDDLTYTKIRFDAESQAFAEANLRRFDDALARAVTWLAFWDMTRDGEFPAE RFVDMTLRLLATETESTTFRYALACMSTTAHHYVAPARRDDVLRHVAAELWTLANAAEAG SDTQFQLVTAYLGYGEEGDAAFAANAHGLLDGTVRLEGLEIDNNFTWTIVQALTSVNEMT NDDVDAQLAKKETTENREFAYGARASMATAEAKEWAWDQALHNDELTNSQLEAVARGFSA TPRSDLAEPFAAKYFETVDWVWANKTYHMADALLNGLYPGYADPATLVKLGDAWLDEHIA ADNALKRLIVENVASSHRTLKVREYNEAL >gi|316915941|gb|ADCN01000022.1| GENE 48 56199 - 58049 2657 616 aa, chain - ## HITS:1 COG:ML1512 KEGG:ns NR:ns ## COG: ML1512 COG0595 # Protein_GI_number: 15827796 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Mycobacterium leprae # 49 606 2 558 558 537 49.0 1e-152 MAQEQKKTSKNTNSRRRGSARGRNANGSNSRTPSRKINATRQATAPQQDAVLIAPPKYRK GSMRITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFSYIKNRLDK VDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVDAKCKEHHQNPTKVEVAGREK LKVGPFDLEFVNVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHRITDLVEFGKIGE KGVDLLMMDSTNAEVPGFVKPETSIGPALDQAFAQATRKIIVASFSSHVHRVQQVVDAAH KYGRKVVFVGRSMVRNMSIAADLGYLHIPEGTVVDLKQANDIQDDKLVFMCTGSQGEPMA ALGRIADGNHRDIHINEFDTVILASSLIPGNEHGVYKVINKLVQLGAKVVNRDNAAVHVS GHCNEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPQNVVLAEDGDVVDLYH GRAAVVGSVPCGYVYVDGDSVGELTDDELEKRRILGTEGFVSAFVVVDTDNHEVVTGPKI YLNAVAEDESEFDKVRHQIVEQLNDQMMQGTRDTYKLQQTMRRTLGSWVARQLHRKPMIV PVVADIAQDVETVETK >gi|316915941|gb|ADCN01000022.1| GENE 49 58134 - 59039 1107 301 aa, chain - ## HITS:1 COG:ML1513 KEGG:ns NR:ns ## COG: ML1513 COG0329 # Protein_GI_number: 15827797 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Mycobacterium leprae # 12 301 10 299 300 231 46.0 2e-60 MSEHDMHLLDSAPFGRILPAMVTPMQSDGSVDFAAAQKLAKYLVADGADGLVVNGTTGES PVTHMDEKVELVRAVKEVVDVPVISGAGSNDTAHTVRMVEQTQEAGADAVLVVMPYYSRP SQDGIVGHYKAVDESAEKPIIVYDVPGRTGLKVKVGTYDRLAELEHVKAVKDATGDLAAA VEKQQRTGLAWYSGDDGLFLPFLSIGAVGIISVIAHVASNPMQQLVQAFDRGDITTARRL ANQLAPLVHALNGDGYQAVMAKAALKVKGVIPSTTMRLPNIGPDATQLDKAEEGMRAAGL L >gi|316915941|gb|ADCN01000022.1| GENE 50 59202 - 59957 1170 251 aa, chain - ## HITS:1 COG:MT2843 KEGG:ns NR:ns ## COG: MT2843 COG0289 # Protein_GI_number: 15842311 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Mycobacterium tuberculosis CDC1551 # 2 251 1 244 245 238 58.0 6e-63 MIKVSVVGAKGRMGSHVVEAVNNAEDTQLALALDAGDDLTQITTDNTDVVVEFTVPSVSL NNVLTLIGQGVDVVVGTTGWTDEKLAQIKSAIANGPKPETQKVFIAPNFAISAVLADYFA TKAAKYFESAEVIELHHPTKVDAPSGTAIHTAHGIAEARKAAGLAPVPDATETDGGSRGQ VVDGIHVHAVRLRGLNAHEEVLFGNAGEQLTIRADSFDRTSFMPGVLLAVRKLAGDAPAG LTIGLDHFLDL >gi|316915941|gb|ADCN01000022.1| GENE 51 60293 - 61549 1450 418 aa, chain - ## HITS:1 COG:mll7465 KEGG:ns NR:ns ## COG: mll7465 COG0477 # Protein_GI_number: 13476206 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 3 416 12 387 407 147 30.0 4e-35 MLPGAKAFCLSGAVARLPISMMSLGIVLALNHLYDNWTIAGTMSAAYVLAMSCVTPFYAR AFDRFGQARVGRLALAVQIVAMLAFAFAALVRVPIPLLFALAIIMGLTQFSFGALVRTRW SYALRGVEDGEQLLNTAYAMEAAIDEIVFILGPILAAWLATSVHPVSQLFVPTVACGIGG TIFFSLKSTQPPVIVEQVSVAAHDDGSPAASEDADQLTLRQLKRSGAKPKSVLLYAGVLP LLAVFIVFNMSFTSFDVSITATMKSMGLEPFLGLQLAMFAVGSCIGALVFGSCQLKGSHW AHMVMFLSLLTVGYVFFRLSMDNLILLGVFEILAGLTVSPTFATGNLIVKDLVPAESLTE GLSWVTTAGTVGTSIGSSVAGIVLDASNPHVGMMLPFIFTLASVPLALAGWALAKRRG >gi|316915941|gb|ADCN01000022.1| GENE 52 61825 - 65856 2604 1343 aa, chain - ## HITS:1 COG:Rv3201c_1 KEGG:ns NR:ns ## COG: Rv3201c_1 COG0210 # Protein_GI_number: 15610337 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Mycobacterium tuberculosis H37Rv # 1 944 19 816 821 228 27.0 6e-59 MSTFTPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR KAAGELLERVSAAVAGDMAGSTTDTVSDRAFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA INRVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC TYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRR YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ DFHLSAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMP EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA DLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG DLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN PQHRANPALAHMPMDAIVDLVDMYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP VDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPE GFFIGEHAAAYGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSS LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVTSLQARVG GMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPH TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSASAVSAASATSISSDNAT ESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTARFT VVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSVDATLYYVSEPDEGLRELHA RAKTKQEILTELSSGIPEQSDND >gi|316915941|gb|ADCN01000022.1| GENE 53 65853 - 70163 1809 1436 aa, chain - ## HITS:1 COG:Cgl0751_1 KEGG:ns NR:ns ## COG: Cgl0751_1 COG0210 # Protein_GI_number: 19552001 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 709 979 491 756 756 72 25.0 8e-12 MTRLEPGTVLDGIDRDGAARLIVGTPGSGKTEFALSVLMAGLRRYGGTQAVMAVSGRVAA DALGNRVIRELGFSVQARPVTTLGAVAFRAISASREGTGLPSPRLLNGAEQDALLRQVMA VHLRHAVAGDDCGTCDLLRVYFAQDDWARLIRDAGAGEMPGSAASAQSSLSQQGSDSPSP TSAGGSTSADRFTRGISDAFISQLRDMLARLDELGVGVHEEPRLLDAVTEDARLSVQWRL AFALRREYIAAQSAVYPGQYRLDASYLLVAGARVVREAFAADHADDSDRPMCVEALGLPR LLVVDDVQDTTLAGMRFLEELGNAGVKLVLVGNPDESVQTFRGSYPEYLMRRAVEGRLKA KEEQLVGGSAVADQSHMTMADVIASRISLSIPSPEDEPLPPAERPGKLTAILGGVDAANY QADGTVTAGLYRSSREELDDVVWRIKRAHLDRHIRWNDMAVITHDNAAVRLFGERLRRDG VPVRYSSVTRPLKDETFVQGLFALVELARLRAEGMAECQMTLASCAAYIRTRVATLMNGP LVSAGAKPGQGRPARLAPIESAMGSLESLAHLATDDAMLTSLTTAWETLRETYHETRRET GRETSSSVVSTSAVSSSVTSLPVSVEILGEPSGDDLAFGVDALYVMLAIDDAAAPAQAAL ASIHAVLGNDPQARAFANLWHLVGSVASGLERLPASQRVQPRYALSVAWNATGLAPVWQR AALFNTAEGRTANDRLDAAMRLFQFADDSTASRDITSFMAQVRGMEVQADSLAHIGPVED AVTLTTPAGAAGRHWEYAWIPVVQQDVWPNLAGRNTMFGGEDLAELVLRGALEESDKTGH DPRFAAVLSGEKKSFLVALTRARRIMISAVWNDSMSPSDFLFGYLPEYYPRNRQQAPFTT VGAHAGFAEYDLAGLDADPRGLVSAARAVLATAQPQQAAAKDAAIALTLLLEHGVRAANP QSWAFVESPAQSDSASSGGASSGGASSGDTSSDSASSDSASSGGVQPDGIQTGKGKTDAQ AAPMVTLSPSAVDSLWACPVCWMLENRFAGPRPSSVATSFGTLIHAVAQQGSEEGLDHLS HNAQALAALGLDSTAGAERRIEAVSARLNAIYQSKRPDPNAIADTRNRYEATRKDESAAD TLRNIADYFVRSDADPETYLGKNSSNFSIGALAGAECEREFAARFDVRDILDAYNAVPGL HPIGRNTLVRLMGALVGGWPEGMDEHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRT PTVKQIFNDLQLVCYQLGLVFPEDGPRGAKALAAMPHISQSVLFHVGQNAAPARSYAPEG AFQPPLFTDGSLNAEPFTPRYWYKDPNRFFDIPAIDPATPPEGVSAEAWAQFAALAGTQT LWSLTMIARVFYAAAASRSAIIEAHPQDTHIGFCRMKNVCPACAGQIDTIFETRQA >gi|316915941|gb|ADCN01000022.1| GENE 54 70295 - 71716 1224 473 aa, chain + ## HITS:1 COG:Rv3080c_1 KEGG:ns NR:ns ## COG: Rv3080c_1 COG0515 # Protein_GI_number: 15610217 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis H37Rv # 2 297 12 308 340 142 33.0 1e-33 MDNIPMRPPKLPGYDFVQMLGSGATATVYLYNQRMPARPVAVKASAKTLDPRAAALFNRE ANFMAKLSSHPYILPVYGAGVTSDGHGYIVIEYAPGGTYNSIMKARSMTCEQVLDLGIKL SSALFTAHRSNIIHHDIKPSNILITSQGLPVLGDFGISTDVYDRTETGFSPPWAPPEVLQ HLTNGSEAADIYSLAATLYAMFVGCSPFQHDYHPRSQSELISLIVNQPLPRLNRPDVPAD VEAVLRRALNKDPDQRYYSALEFARAMQRVQFAYFGHATPVTVEGMPAYPKDIERRRRAT DQRDQITRSSRRWVKPVGITVGILAAITAAALIFAFVVVPRMDSATGSDTKQVATPGTKD DDNNRNNQDDVITDTANAQIPSPENLNGTYAADGSSVTFTWTNPDPQSGDTYAWAIVQGS NTDQSAQTVTTSDPTVTVNAQEGSQTCIQVSIVRKNRQMSVSPAIACAAKPQE >gi|316915941|gb|ADCN01000022.1| GENE 55 71883 - 77867 5444 1994 aa, chain + ## HITS:1 COG:no KEGG:BL1199 NR:ns ## KEGG: BL1199 # Name: not_defined # Def: fibronectin type III domain-containing protein # Organism: B.longum # Pathway: not_defined # 1 1994 1 1994 1994 3285 99.0 0 MATSSQSYDRRRRISAALRRLMPSGGHTWTVPVITLLLLLGLVAGAVIMSTVTRRHVQLD DGTVWVTSLKNQKAARFNVKNKEADAGVSSSAPRFDIAQHNGDTILTETTKASTIKASTV STGVKTDIKANTTTVVGGDTAALINEKTGNVWTGLSENLDSVTPTTSDPKIKLGEGGRIA VTHDGKVYGYRPSDGMVLRLDNPSSAKAKTLESLTDGKQQTVESFTVIGSTPVIATGKTV IFKGGRVDVDTTGTLTLQEPPTDDIQSDWVAAASPRGLALIPLKSNAKANFIANGGKANP ARPVSSKGCVYSAWSQKASNYIRACSPTDTSVKPQTLESVNTTSELVFRTNHRLVVLNDT VNGNVWNPEDSTKVIKIQWNKIQTEQTEKEQQNNDSANNHHDFSKTCSAQSGQIKAEDDE IGARAGSEQILDALRNDEQTDCSVLKITKVGAPNNKDVTISPIYDGRYLQLDASAASAGT VTFTYDISDGRGQTSSATVTVTLNDGGNHAPVQFDTPPEIDVEQGASYTANALSSFNDPD GDPLTLVSAVAQNTDQVQVSTRADGQLTFNTGALASGRVGVEVTVSDGTATGTGMVYFSV KPANTLAAVIDPVAKTTVPNTDTVVKLSSYVHGTSLQPAQLTQVDTPNGASTTTNAADMS LTFKATNPGTYYVPYIITQGSIPATGLARVEVQPATGEAAKPVAANDVALLGADNTAIVE PLTNDVDPMGGVLSVTTVSAPADSGIKVGLVSHKRVYITARQVPTKPVALTYTVANASGT AKGTIVLQPPALATSNSVPKASNINAQVRTDGIVSVDVLDHVAYSDGTTVKLKNNLQYDK GTFKGLAFVSGDTVRYQASSETGNFPITYTVEDNLGNVASANITITVHKSDAASKAAPTP HDAEAQVAAGQKVRIPITLTGIDTDGDDDQLLGLGNKAPTLGRISEVGSDYLVYEAYPDS SGTDTFSYAVEDWTGQRAQAQIRVGVFQGSSDSGVYARDDEITLRPNTAATVPVAQNDIS GDNTNLTVDKHVEVQGLDGVSVKDNMLSFTTPDSATTDYIAYTVKDKAGLSDTATLTVNV DPNAAIEPPTAYDYRVPSAATIDKKSVDVDVSQWIANPSGTANELKVGMHPSASAHAHVR GGEHSTTITVDLTSQARAVPYTVTNTKYNITSTAFIQVPAYGVFPPTLRPKAPELKVNSR ETIEININDYVRVGAGKEPYIESADSVSATKASNSDFYVNDKTLKFTAAKDYAGPASITF TAVDGKQGSDKTKIINSAVITLQITVIGRDVPPPTFSSSTIDVEAGADPKTVDLTALTHA PSGVYDDEKQYTYSGGSSSSRQITANLSRSGSLQVSATKDAAPGTTASIPVQIAYGAGTV NAGVTVRVVSSTRPLTRVGNKTLKIKAGASDAVNVLTGAYNPFPDSSLTVISCKADDAAK LTIAGCDASGNITIAVASDVGASTNTVLVTVQDGTKSKDREVTASITVSVIDKPEPPLLS PVAGEPQDSAVSLTWTPGAANGSPITNYKVSWTGAVTGEKDCGTVTSCQVTGLKNGKTYS FTVAARNDVGWSKPSTAVEATPDKVPSAPTDVTVTGGNKTAKVTWKAPSGDFSAVDNYSV TVTGAGAPQTKETGNTATELSFTFNNNDISDGTAITATVKAHNKINWSAESAASPSEKIW GDPDAPNIALSNDDTTVTAKVTLGNNRNAGCRRISLGGDVKDTIDCSDSGATFDINENDL NTREITVTATVVPQRDASSGTGKSSFVPQYKVQPPTDVYTTGSGSTCTVHWTKQGHAQSY SVTADGIDSGTATNRNSLDFRMSPWAKCNTASVQQVFNGATSDAVTGGPHNGAPYTYEKK AVINKPQELRWSDNAHVINVTGGSVDVYGKSATVQIIINGQPFTWNSGQPLDVTDLAVAA DGNYAWSVKVTGGPGYSGLDNTADGGSVAGTRPSDSSEGTKSLKSGTDVTTLAKNPWILG FGNTPISSTTIHKQ >gi|316915941|gb|ADCN01000022.1| GENE 56 77878 - 79251 1553 457 aa, chain + ## HITS:1 COG:PH0776 KEGG:ns NR:ns ## COG: PH0776 COG0714 # Protein_GI_number: 14590644 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Pyrococcus horikoshii # 146 453 2 311 314 300 50.0 3e-81 MSENIDDATQLSDTTRLSDSTQLSDSTHLSDATHLASAPHTGTTPSTESAPQSVALPNLP QRPSQAPSEKPSPTTDAASIPAGDDSTVLKPRKGSTPAIPQQATAQSQPQSQPQRQSSKA AQAAASALPASINSGLLPQPTAQVRDFQQSFNALVENVSKVVIGKTIPIKQCVTALMVGG HILLEDNPGTGKTQLARGLANSISTGFKRVQFTPDLLPSDVVGVTFYDQKRGEFEFREGP IFASIVLADEINRASPKTQSALLEVMEEQKVTVDGVTHDVPQPFIVIATQNPIEQLGTYK LPEAQMDRFLIKTSIGYPGHDVSVDILKQVDITDRAQTISPVLSGDDVMRLRQVATEIYV DDAIREYIVRLVEATRHNEKITVGSSMRGALALTRCARIWAAADGRAYVVPDDVKDLAVA VLAHRITLTPEATFDGATPESLIAQVLEDVPSPTIGS >gi|316915941|gb|ADCN01000022.1| GENE 57 79276 - 80499 883 407 aa, chain + ## HITS:1 COG:no KEGG:BL1200 NR:ns ## KEGG: BL1200 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 407 1 407 407 802 100.0 0 MASTSAALRRRRRAERMFKRAVRRIRRFFASYVSPLGWAVTGAGIACLIAFPFLGWYELL VFGIVAMVMMLAAIVLSLGNTRFHASIVVSNHRVTVGDTVSVIVGIDNTGRTPTTTARGY LPIGDAHERFNIPMLAPGQSKQTDVEFRTVSRAILPIGPLRIRKGDPFGLVRHEKELADR ITVFIHPRTVRLDTLNAGVPRDLEGQPSGQIVDDDLDFYGLREYEPGDDVRNVHWLSSAK TGTLMIRQYEATRRTDTSVTISVNPDEYVNGEEFEMAVSIHSSIGVKCLLQDRPLFCHAG NAHGQPRNAMEFLDNASAIEPDREDNPNLAEGTLKHSPDASFYFFTVGSLKDIEQIKRMT LALPRSASCVVLQASAGANRGIRRFANFTLATIGDLDDLPLIMGVLA >gi|316915941|gb|ADCN01000022.1| GENE 58 80496 - 83009 2055 837 aa, chain + ## HITS:1 COG:lin0469 KEGG:ns NR:ns ## COG: lin0469 COG1305 # Protein_GI_number: 16799545 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Listeria innocua # 69 663 2 589 721 85 21.0 4e-16 MTFDQSSITNTNTAAYAGSSGTYTGTSSGTYTGTSTTTGSWADSTHSVIWMTRGNVLRGM GLSRQPWGKRIASLVLIAAMMLLAQANLIDVYGGVATWAIAAVPATLLGAIIALAGMLPA LRLWWQIVFLAFAQFIIGPVVTLSSTTSHYVIPTLKTLSSGWEMTFGSFKYIISVDPPLG TQDGVLMAVWTIGLWLTFFTGVFAINANAWLSLVGVLPLAAAVAVCALLGTDSGWQRAIC GIAFALLLIIWLSWRLELLEWGRWISALIIVVLAAGLAFGGTLLVPQDRFVLRDRYDPPL SPYDYTSPLSGMRSYIKDHKKDVLLTVHNLPAGTPVKLAVMDRFDGTVWNLSDSSEATDS SNYHRVGTTIKADEQGKSFTATFTVDQGLTDTWLPLAGAATGVSFANDADNGNDTFYYNT DTDSAIIPAGTRKGLTYTESGIIARNPTDKQISSAAAARITQPEAQDVPDSASKLATSIA GGQSSGGAAATALADTLKDSGWFSHGLEGDYPSDAGHGNYRINKLLAGTAMVGDSEQYAS AMALMARDLGLPSRVVLGFLPKNEDGEITDARTEKTSGNGTKIEFTGNDVTAWVEIKLQG LGWVAFYPTPKETKMPDENQNLTPPNPQTLVRQPPVPLTDPLRDQTQAKGQSSLAGADAD DSPTNLFWARFWRVTCKVALYGSPLWTLLIACGLILMFKAILLARARRHGSPKTRVAAGW NAIRMLAEQSGITAKGTRRDQAGAIARQLGTDDQALIQLGREADYATFSGQDIESGQATT YWTGVDQLRKAMLASLPRFRRIRTRLSLKSVAILSNGHAAKPHTTHVKRTRKKGKAS >gi|316915941|gb|ADCN01000022.1| GENE 59 83006 - 83938 681 310 aa, chain + ## HITS:1 COG:alr4516 KEGG:ns NR:ns ## COG: alr4516 COG0631 # Protein_GI_number: 17232008 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Nostoc sp. PCC 7120 # 12 272 9 239 240 88 30.0 1e-17 MTTGSIRIAMTSDVGLRRKNNQDTGFAQQGVFMVCDGMGGGKGGEQASQLAAQHFAQLAA MPSRTRQDIDDTLARAQHDILDLGDRLGGVAGTTCSGLVLPQDHADSASARSAALFSDAD DQDFSDQTYVVNVGDSRTYHLSPLAHADAPATDIIPVWDAASLTRITRDHSQRQEAIDSG QMLPEEAEATIPRNIITQCLGDPDGIMPDVYVADLTGRFIICSDGLHGEVPDEQIAAIAA AHSSPQEAVDALVAAALDAGGTDNITVIVADMPLTEPEHHAFSAFRLDEGEDIGTIEDAT LQTLRTIRSA >gi|316915941|gb|ADCN01000022.1| GENE 60 83965 - 84480 797 171 aa, chain + ## HITS:1 COG:no KEGG:BLD_0962 NR:ns ## KEGG: BLD_0962 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 171 1 170 170 245 97.0 4e-64 MVDYDAAVAAVQDPNADPILLAKIAYENPEFGANVAVNPRCYPGLKRWIAEFGDDRARET LAQYGFTAEAFGGPVQDQKATAQAAQQPAAEQAQQPAAQAAFEEPVATNPYGFTAEQALT TTDQMQIAQIAQCAPELRACIARNPNTYPALIEWLGQLGDPAINAALASRQ >gi|316915941|gb|ADCN01000022.1| GENE 61 84496 - 85128 759 210 aa, chain + ## HITS:1 COG:no KEGG:BLD_0963 NR:ns ## KEGG: BLD_0963 # Name: not_defined # Def: forkhead domain protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 210 1 210 210 305 96.0 1e-81 MAKLPYPPAPELGWYSDDPVEGTPDSAVGTAEPQNDYGQPSTAEAATNTAFTAEPAATAA AAEPAATAPADTTPHAAENDIEDWDSTVLSSSFTSKAPKKTYLLHNDVTGQTIVIDKSTL LGRKPSMDVPQGAKAVRIVDPTRTTSRNHAAISIDTDGALWIEDYGSLNGTYIITNGQET QVTKGTPLKLSAPATVRIGDQFFQFTEKQA >gi|316915941|gb|ADCN01000022.1| GENE 62 85287 - 89324 6632 1345 aa, chain - ## HITS:1 COG:Rv0668 KEGG:ns NR:ns ## COG: Rv0668 COG0086 # Protein_GI_number: 15607808 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Mycobacterium tuberculosis H37Rv # 1 1306 1 1314 1316 1543 59.0 0 MLDVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDSEIKRLEQRRDSDIEARAKKVEED LAALEEAGEAKGPARTKLRNGAERDMAAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDASEQRKTKALKRLKVV NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGVKGQG RVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEER FHDGTVLFATSYGRILFNETLPTDYPFVNEQVAKGRLSKIVDDIAMRYSTQQVAATLDAL KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID LWTECTAEVSKEVEEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG LPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVA HGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADS GAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVK NGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDASFSDADLSDLNFSNLEFG DLKLGDDFNPDDFYSDQGGQPDIEE >gi|316915941|gb|ADCN01000022.1| GENE 63 89492 - 93055 833 1187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 656 1143 857 1390 1392 325 40 7e-88 MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNER WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMT KSEIAQAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL RVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ ANQELDENGNFVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMND DGTTSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAF MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNLEAEWKKL IPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP YTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL NAEGVAIDMKDEDDDPASSADDLGFNIGARPDAAAKEDQKAEEPEYQ >gi|316915941|gb|ADCN01000022.1| GENE 64 93210 - 93932 556 240 aa, chain - ## HITS:1 COG:no KEGG:BLD_0966 NR:ns ## KEGG: BLD_0966 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 240 1 240 240 444 100.0 1e-123 MAVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAIYRRRRIVAGTVL LLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLS AASQSVPVGGSLDFTATIVHEGSGNCLVDGSDSGRVLTITSGQETIYKSDVCPADSRLLL MAKGDKDVQKVTWNTNANATLAKCTDESGWAKVNAGTYVAQLSLKDHPKVKSDPVTFTVQ >gi|316915941|gb|ADCN01000022.1| GENE 65 93996 - 94982 904 328 aa, chain - ## HITS:1 COG:Cgl2617 KEGG:ns NR:ns ## COG: Cgl2617 COG1194 # Protein_GI_number: 19553867 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Corynebacterium glutamicum # 1 323 1 287 293 232 41.0 8e-61 MNDTAISLRLGAWWEANARDLPWRFGRATPWGVLVSEVMSQQTQMSRVVPYWTDWMERWP DARALAEAPKAEVITAWGRLGYPRRALRLQECARVVAEDYADKLPRTYDELTALPGIGDY TASAVMSFAFGERIAVIDTNIRRVLSRVFLGVESRGGATSPAERALANRMLPKDEILGCD ADVADNAGSAEHVVNSTIRGGKRSRLHRGERPSVTWNQSVMELGAVICTAKSPLCDTCPI ADDCAFLKAGRPGLGERRTRPRQRFQGTDRQVRGLVLAALRELPAGATLPREDADKLWKD QIQLAACIASLDDDGLIEILDGGLRLPS >gi|316915941|gb|ADCN01000022.1| GENE 66 95003 - 95665 693 220 aa, chain + ## HITS:1 COG:MT3475 KEGG:ns NR:ns ## COG: MT3475 COG0219 # Protein_GI_number: 15842962 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Mycobacterium tuberculosis CDC1551 # 68 219 4 153 154 167 53.0 1e-41 MTNEAEQNSQNAQNPETKVEKMFEYGYRKSNYGPDELVTDAHGNPISVVDAMLSAEKAAT TETVTPHLCYYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAH VVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIMEGP HVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGR >gi|316915941|gb|ADCN01000022.1| GENE 67 95972 - 97336 2151 454 aa, chain - ## HITS:1 COG:CAC0479 KEGG:ns NR:ns ## COG: CAC0479 COG2848 # Protein_GI_number: 15893770 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 2 454 1 451 451 564 65.0 1e-160 MLNIMEVHETNQMIEQEKLDVRTITMGISLLDCASDDVDKTCDNIYRKITTYAKDLVSTG KAIERDYGIPIVNKRITVTPISLVGASSCKTSEDFVKIAHALDKAAKEVGVDLIGGYSAL VSKSMTPAEELLIRSLPQALSETDIVCSSVNVGSTKTGIDMNAVELLGHIIKDVAERTAD NDSYGCVKFVAFCNVPDDNPFMAGGFHGVTEGDAVINVGVSGPGVVSRALDAAKGKDFEF LCETIKRTAFKITRVGQLVAQEASRRLGIPFGIIDLSLAPTPAVGDSVGEVLEKIGLEQV GAPGTTAALAMLNDQVKKGGIMASSYVGGLSGAFIPVSEDKNMIDAASSDCLTIEKLEAM TCVCSVGLDMIAIPGDTSASTISGLIADEAAIGMVNQKTTAVRVIPVAGKGVGEMANFGG LMGYAPIMPVNQTSCEAFVTRGGRIPAPIHSFKN >gi|316915941|gb|ADCN01000022.1| GENE 68 97472 - 97744 417 90 aa, chain - ## HITS:1 COG:MJ1558 KEGG:ns NR:ns ## COG: MJ1558 COG3830 # Protein_GI_number: 15669753 # Func_class: T Signal transduction mechanisms # Function: ACT domain-containing protein # Organism: Methanococcus jannaschii # 1 90 1 90 90 83 45.0 1e-16 MNKAIITVVGQDTVGIIARVCTYLSQHNVNVLDISQTIIDGYFNMMMIVDYANADKDFGA MVGNLEDLGDDIGVRIRCQREEIFTKMHRI >gi|316915941|gb|ADCN01000022.1| GENE 69 97827 - 99077 1938 416 aa, chain - ## HITS:1 COG:FN2107 KEGG:ns NR:ns ## COG: FN2107 COG0153 # Protein_GI_number: 19705397 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Fusobacterium nucleatum # 37 405 24 379 389 199 34.0 1e-50 MTAVEFIEPLTHEEGVSQATKLFVDTYGAAPEGVWAAPGRVNLIGEHTDYNAGLCLPIAL PHRTFIALKPREDTKVRVVSDVAPDKVAEADLDGLKARGVDGWSAYPTGVAWALRQAGFD KVKGFDAAFVSCVPLGSGLSSSAAMTCSTALALDDVYGLGYGDSDAGRVTLINAAIKSEN EMAGASTGGLDQNASMRCTAGHALLLDCRPELTPLENVSQQEFDLDKYNLELLVVDTQAP HQLNDGQYAQRRATCEEAAKILGVANLRVTADGISKADDQFQALKETLDALPDETMKKRV RHVVTEIERVRSFVRAFAQGDIKAAGRLFNASHDSLAADYEVTVPELDIAVDVARKNGAY GARMTGGGFGGSIIALVDKGRSQEVAQKIADEFEKQGFHAPRALAAYAAKSASREA >gi|316915941|gb|ADCN01000022.1| GENE 70 99094 - 100344 2135 416 aa, chain - ## HITS:1 COG:VC1596 KEGG:ns NR:ns ## COG: VC1596 COG1085 # Protein_GI_number: 15641604 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Vibrio cholerae # 70 412 26 363 372 159 32.0 1e-38 MADFANYTPGEYAKEHIRITPTTLADGRDFFYLDDDPEFVSGAKTRELKDPRPLDYRFAP HLDADGNEVPYAAPQMRRDPLTGDWIPMATARMNRPITAGPGATAKGNPLAARKPGDPYQ DGEVPDTDYNVVVFENRFPSMVRVPGVSEDVTYVDGNPLWEKKLAAGRCEVICFDPNEDG LPADLPVSRLRTVVEAWAFRTAEISKMEGIEQIFPFENHGQEIGVSLAHPHGQVYCYPFI APKMEKELQHTEAYHEKTGGNLLKDIMNAELEAGERIVMRNHSWVAYVPAAARWPLEVHV APVRDVLTLDQLNDEERWDLASMYSHLLKRGNAFFDKGDGKGMDLPYIAAWHQAPIHDAR RENYRLNLQFFSFRRAANKIKYLAGSESGMAAWISDTTPELIAKRFHELGSIDIAD >gi|316915941|gb|ADCN01000022.1| GENE 71 100349 - 101053 806 234 aa, chain - ## HITS:1 COG:BS_yulB KEGG:ns NR:ns ## COG: BS_yulB COG1349 # Protein_GI_number: 16080173 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Bacillus subtilis # 2 216 35 244 258 113 34.0 3e-25 MTIRRDIAELADKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDIGLKDAIAQEAIKYVAPG DVIAIGGGTTAYVFAQHLLESQQSSGITILTNSIPVAELVQALESKDVEVIVTGGVITRS NSLVGPIADKVVASLRVNTVFLGTHSVSIPRGFLMPNSLEAATDMAMMDIADRTIVLTDH TKWSCTSLSLFARFDQVNTVITDDGLDPDSAAKTKDLVKELVLAHQSETIEESE >gi|316915941|gb|ADCN01000022.1| GENE 72 101507 - 102658 1436 383 aa, chain + ## HITS:1 COG:slr1418 KEGG:ns NR:ns ## COG: slr1418 COG0167 # Protein_GI_number: 16332087 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Synechocystis # 39 381 20 374 381 181 31.0 3e-45 MTYVSESFWHDAVNKATTDLFTFGYKHIIKPNFVFNHRPDEAHDQMIEFCHVVKNVPPLL LAEQLMLDYTDPILETNVMGVDFTNPFGLSAGLDKNCEMPVVLDHAGFGFETVGSTTSRP CPGNAKPWFHRLPEYDSMMVHVGLANIGSDKVIERAEKAWTQARQMQLSVSIARTNDDQC GDLDEGIEDYCISMRRAAGRTAMVEVNVSCPNTHVGEPFTATPEALDRLFTALDKIDRPQ PTLVKMPLNKPWGEYKELLDVLAEHNVQGLSIANLQKDRTGLEIPRDWEGGLSGGPCTNA STELIRKVYKEYGDRFAIAGIGGVFTPEQAYAKIRSGSSLVMFISSLMYRGPQQITVLKR GLAQLLRRDGFEHVSDAVGVDVE >gi|316915941|gb|ADCN01000022.1| GENE 73 102826 - 104199 1309 457 aa, chain - ## HITS:1 COG:DR2190 KEGG:ns NR:ns ## COG: DR2190 COG1902 # Protein_GI_number: 15807184 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Deinococcus radiodurans # 101 446 19 362 370 327 50.0 3e-89 MSNDDLTHENFDFRGFDVPDLKAVTLASSSDGDQSKQPKTKHEDASKNRKHGKKKSKSDA RSKKRAGAGKTSESFDDYEDYEEREAVSKADKKVSKDRPGLFAPMTLREVTVRNRIWLPP MCTYSSFARDGRPTPFHYQHYVSRAFGGFGMVIVESTAVAPEGRITPCDLGLWEDGQIDA WRWIVDGIREAGAVPAIQLNHAGRKASTGCFAVGYDGQSVPEEAGGWPTMAPSEIAFGGL RTPRALSVDEIHGLVGAFAAAAGRAVAAGFQAIQIHAAHGYLISQFLDPLSNERDDEYGG DLTGRSRFLVEVVDAVRGAVPEGVPVLVRISATDWAAGGWDLDQTIALSKVLKEHGVDVM DVSTGGIMSGVSIPVKPNYQVPFSEQVKAKADIPVTAVGLITKPKQAAKILAHGEADAVE IGRAALRDPYWPLRAANKLGIPSTEIPYAPQYVAGAY >gi|316915941|gb|ADCN01000022.1| GENE 74 104391 - 106706 2208 771 aa, chain - ## HITS:1 COG:ML2308 KEGG:ns NR:ns ## COG: ML2308 COG0744 # Protein_GI_number: 15828240 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Mycobacterium leprae # 19 665 14 650 803 213 29.0 2e-54 MGPMPKKKSLTLQRVLVLLLAYIMLAVCGGVAASVLFVPGVIGANKAAKAVIPSLKVENV DFDVTSLPQKSTMYARDGSTVIATFYNQNRIVVPLKKISKTMQQAVVAREDRRFWTHAGV DVQGVMRAFVQTYLVKGSQQGGSSLTQQYVKNVLLMQAIEDDDSIAQYHATEDTIARKIR EMLISVQMEKKYSKAEILQGYLNIAQFGNNLYGVETAAQRYFSVSAADLNVVQSATIAAI TKNPSLYDPLVEENQKESENQRNIVLKLMLQEGYITQKQYTEAVNTPLKDTLKAQDVNVG CQDTGDYAYFCDFVVHRIQNSEEFGKTRAERNKLLQEGGLKIVTTLDVEANSTMMETARN TIPPDDPSGMEIAMAAVKPGTGEVLSFGLNRYYDATPAAANDPTKTSQNYAVDLADGGGS GWTIGSSWKPINLIAWMEAGHSINDNLQTSTSYPTTDFACSNYSGGADSWNVSNAMGAGT VNPESPFLGLVRSHNTTQASMGAILKLCKVADTATELGYHDAATGETIDKTQVYTPSMMI GSVNVSPLTMASIFAVYASNGVQCNPIAISKVTDKDGNDLKVPSANCHQAVDKDIIQTLA YTLNQGTVRPDGAGWSFRLADGRKSFGKTGTSEDLAVSGGSFIPNQIAAFAVVGDAQNPY TNRISNIAINGRYNSYWDGSTIAAPAVTNFFNSYISKKKIPIDNDYGQPVSKYTTTGKYL GIGGRTFSVPQTTTNGNSQSQSSNNQSQSQNTGQNNTQTQGTNSEQSNDGQ >gi|316915941|gb|ADCN01000022.1| GENE 75 106810 - 107529 778 239 aa, chain - ## HITS:1 COG:ML2302 KEGG:ns NR:ns ## COG: ML2302 COG0664 # Protein_GI_number: 15828234 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Mycobacterium leprae # 13 238 2 224 224 184 45.0 9e-47 MSLETPNAFADEENILLHTALFKQVSPAEAEELLPHLKHATFDKGDYIFSEGDTDQRMYL LEQGRVKLIRTSSDDRVQLLSIHAPGEVLGEIPVFDPHGGPRTASAVSMSHGTRVVWLEH DALFAWLDEHPRVAIDMLQVMASRQRGNNERISDLVFMDVPARLAKTLLNLGSRFGEPVE QGLKVPHDLTQEELAQLVGSSRETVNKALMDFSNRGWIARDGRSIIIFQPGMLIRRSRR >gi|316915941|gb|ADCN01000022.1| GENE 76 107768 - 108853 756 361 aa, chain - ## HITS:1 COG:Cgl1050 KEGG:ns NR:ns ## COG: Cgl1050 COG0095 # Protein_GI_number: 19552300 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Corynebacterium glutamicum # 5 361 4 317 352 218 41.0 1e-56 MQMRHGECKTVGSKLVAVTVSVDDDGTAQSCHISGDFFIESVSDAESHALLHDLERALIS DDSLRSVLDAHPSCQIIGTDEIAIKTAYSRAVSSNLPPLAGAPAQRVGVGSPDAPNIPAS INTQTKQPDKSSEYRERWNALKPQLTVIHGHPRTPDEQMAIDETWAREVAAGTRQPTIRL WEWAGPAVVIGRFQSAQDEVNLDIAKQLGFDVVRRCTGGGAMFIEPGNTITYSLYAPLDF VQGVSIEESYRLCDWWLVEALRELGLDVRFAGLNDIASQYGKIGGAAQRRFPVGSGGAVL HHVTMAYDIDAAKMSRVLNTSREKMSDKAVKSAVKRVDPMKSQTGLSREHIVEHLIDWFA A >gi|316915941|gb|ADCN01000022.1| GENE 77 108911 - 109942 1728 343 aa, chain - ## HITS:1 COG:Cgl1256 KEGG:ns NR:ns ## COG: Cgl1256 COG0473 # Protein_GI_number: 19552506 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Corynebacterium glutamicum # 6 340 2 335 340 399 62.0 1e-111 MAKTYKIAVIPGDGIGKEVTPWAQKALEKAAEGVADFEYENFDLGAERYLRDGAILPEDE EERIKANDAILLGAVGDPRIKAGILERGLLLKLRFDLDQYVNLRPSKLYKGVTSPLANPG DIDFVVVREGTEGLYCGAGGAVRRNTPQEVATEVSINTAYGVERVVRYAFKLAMKRKKHV TLVHKKNVLVNAGDMWQRIVDKVGEEYPEVTHDYQHIDAATIFLVSDPSRFDVILTDNLF GDILTDEAGSVVGGVGYSASGCINASDEFPSMFEPIHGSAPDIAGQNKANPTAAILSAAM LLEHLGFDDAAKKIHTAVEADIEELGSTMRSTDQVGKDILARM >gi|316915941|gb|ADCN01000022.1| GENE 78 110007 - 112523 2342 838 aa, chain - ## HITS:1 COG:Rv0782 KEGG:ns NR:ns ## COG: Rv0782 COG1770 # Protein_GI_number: 15607922 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Mycobacterium tuberculosis H37Rv # 493 831 216 530 552 333 49.0 9e-91 MTDESTNAAAAMPPYAKREPKRREFHGDVFDDDYEWMRDKDSDDVRSYVAAENQYCERRM AHLADFRHTLFEELKSHVEETDMSVPTRVNDYWYFTRTQQGKQYGVQCRIPVRDADDWDP PVVDPQGVPGSMPGEQVVFDANKESEGHDFFRLGGLDLSKDGRWMLYGVDVAGDERYDFR IRDLAGLETGEPVSELPEQFTGIGSACFTPDGQWVFWVELDDSWRPLAVWRHRVGTAVES DVCVYRETDERFWVGVGISFDERNIVIGTGSKTTTEVLMLPVATPEGEFQAFIPRQNDIE YDVSFACFEGAGENGADVPLAVVYHNAANPNFEIDVIDMRGHEPPYRLGEGVCIAAGSPY GCEHGEPDKPITEAYFNAVNPAILQGAHGLGIEGIALHRNFVSLSYRADGQPHVAYMTKS AAAADFLAGRPWRFTELLPPALEDDWDMVADDRENFTGDHGEILWTEDEAPTDHTSSSDG ASDDHLPGETRRLYTIGVGGNPSYEAPRMRYSFASYTRPGELHEIDPATGEDALLKRATV LGNFNPRDYMERRVWITARDGERIPVSLVWHRDCPAQDSPMFITGYGAYEISSDPGFSVS RLSMLDRGVLYAVPHIRGGGEMGRAWYEQGRRLNKKHSFEDFVDATRALQKAHLADAWRT VANGGSAGGLLMGAIANMAPECYAGVEADVPFVDALTSILDPDLPLTVTEWDEWGDPLHD PEVYQYMKSYTPYENVPVAVLEGGNDEAAGDGSADGAATGAVAAAQFPRIFITTSMNDTR VLYVEPLKWLARLQSAGVDAVAKIEVEAGHGGLSGRYKQWEEVSYENAWCMDVMGLAH >gi|316915941|gb|ADCN01000022.1| GENE 79 112584 - 113915 1299 443 aa, chain - ## HITS:1 COG:Cgl2204 KEGG:ns NR:ns ## COG: Cgl2204 COG4850 # Protein_GI_number: 19553454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 111 432 27 336 344 179 33.0 1e-44 MRSPREDFEAAGKRLPWDAAARNAALSATAPVSDVKASANGADNASNAEHSDDMPTVPIP ARKAATTFDTPSKRERIEVKPPITRFIRRAVTRVFGVWSRISTQVVRQWDWYPRVEPYVG YGTGDYSRLICRTVYAPRHAQSGELIRGIRGMLAIPAPRTHVQASIDDMPLNTVQIGVSE VYDKVDRTRDLGSEYAISDSAGYLDLVAEHRLVPGIHRVSYSVANRKPVSANLYTIPASA KVGIISDVDDTIMITQAPVPWKAAYNLLFLDPKKKASVPGMSVLFTRIADLFPGAPFFYL STSPWNVESSIRNFITDHGFPEGPLLLRDLDPRPKTFVPTGPQHKLEFAEQLMADFPDMK FILVGDDGQKDPTTYATIARRYPGRVLAIVIRELSPRESTGLASVTGLTSTQPTPVTDVP VFTGTTGSNILKTMLPYLKTVLQ >gi|316915941|gb|ADCN01000022.1| GENE 80 113982 - 114389 656 135 aa, chain - ## HITS:1 COG:ML2077 KEGG:ns NR:ns ## COG: ML2077 COG0509 # Protein_GI_number: 15828123 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Mycobacterium leprae # 14 119 3 109 132 100 48.0 5e-22 MSDDNENEQPLNLDIPDHLEYSEEHAWVDRSVDPAIIGITEYAADQLGELVFVDLPEPGA RVEAGDEIVELESSKAVQPLISPVVGTVKYVNRDVADDPSVVNGDPYGEGWLLKVELDDD EPELLSADEYAKVVR >gi|316915941|gb|ADCN01000022.1| GENE 81 114421 - 115713 1303 430 aa, chain - ## HITS:1 COG:Rv3199c KEGG:ns NR:ns ## COG: Rv3199c COG2816 # Protein_GI_number: 15610335 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Mycobacterium tuberculosis H37Rv # 204 429 90 313 313 137 40.0 4e-32 MTADIHFSPLALTHALPFLPLAQGDIDYQVDRRSEPGLIDELLAEPTTKVVLTRGGLVAV PRGQGELVDYENVKMRLATLPGAYVSAELARYPEAVAMFLGSYVGARGESVVAVDITRVP EAGVPGVGGIAGVGGAVGGVLGTQDSGTVDGALGKNGISGGAAAGIRQPGNAKGNGGVAA AKIAGPLGVPDSAGQGADDAFDDSVGAPVQPLAPKPTLLQQAVTRFDWVDLRGFAPHSNA REAGQATSAITLSIWHSRQRFCPTCGAAVRPALAGWAQRCTNEADGNRVLFPRVEPAVIT AIVDGHDRLLLQHNAAWKDSRLYSVSAGFVEAGENLEHACRREAMEETGIKLGEVRYLGS QPWPFPASLMMAFKAHAITTDVRVDGEETMTARWVTRDEYTAELIAGRMAAPGRATIARY MIEEWLGREL >gi|316915941|gb|ADCN01000022.1| GENE 82 115723 - 116580 847 285 aa, chain - ## HITS:1 COG:mlr7206 KEGG:ns NR:ns ## COG: mlr7206 COG0596 # Protein_GI_number: 13476003 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Mesorhizobium loti # 8 284 23 275 277 73 25.0 5e-13 MAIELANHIYRDGEGVPVVLMNAYPVDHRMWDVCAKALADFADLNDVPDFPIWAPDMAGS GASPVPSDADSGPRMANGAYSEALDRLAGAYVDLIKAAGYEQAIWVGLSMGGYVAMDIQR LYPETVAGLALCDTMAASDGVGGENRLKMADAAEQTNSVEPVMHFAQPADGDSTVKKTPE FIATMTGWINEQNPAGLAWRQRMTYGRPELGAVPETISAPSLVVSGELDPSSNPSVMRPL AERITGAEFIDIPDCGHFSAVEHPDTVARALLSLVKRVQSAQKNA >gi|316915941|gb|ADCN01000022.1| GENE 83 116708 - 117331 808 207 aa, chain - ## HITS:1 COG:no KEGG:BLD_0987 NR:ns ## KEGG: BLD_0987 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 207 1 207 207 418 99.0 1e-116 MNDEVPDEGDYDAGRGRGEFDNITPEDFIHGGGSGHGNPPGWLGPSDINRARHQMPIAYV EIVPVRTDEMGRISQVGSLLRVSEDGSIERTLITGRVLYHETLREAIARNVAKDLGDIAL PLLPIGLQPFTVAEFFPTPGLSEYYDPRQHAIALCYVVPIAGDCKPQDETLDVEWVDPKS DVMNTFVAQMVNGHGRIVRQALAWAGI >gi|316915941|gb|ADCN01000022.1| GENE 84 117596 - 117970 702 124 aa, chain + ## HITS:1 COG:Cgl2917 KEGG:ns NR:ns ## COG: Cgl2917 COG0526 # Protein_GI_number: 19554167 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Corynebacterium glutamicum # 1 110 1 108 124 98 48.0 2e-21 MATTAITSADFEKTITDNEIVFVDFWATWCGPCRAFGPIFEAASNEPENANIAFVKVDID ANQDLAQAAGIQAVPTLMIAKQGEVIFQQAGALQAADLDDLIAQAKALDLAAAKAAQSGA DQQA >gi|316915941|gb|ADCN01000022.1| GENE 85 118040 - 119035 1289 331 aa, chain + ## HITS:1 COG:no KEGG:BLD_0989 NR:ns ## KEGG: BLD_0989 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 331 1 331 331 556 99.0 1e-157 MTRHAKPTRMLRPLNKRQWMKIAAVVAAAGLLGAAGLVSRSFYHADDVKPISTITSFSAT DSAASRSATRGAINSADKNTTFVTVKINGDSRVVLGEKANMTTVKDVLETGDITLDPDDA VSPSLKSKVTEATVVTINRADADVETNDTEIAFNEVRKETSSLPKGQEKVETEGQKGIME TTSLVKRAGDKVISSNVFASWVKKAPVDKVILVGTGSTKSSSSADLGTTVPAGEVQSWAH QYLLDNGYSEADFTAANYIINHESGWSPTATNPTSGAYGLGQAYPGSKMASAGADWQTNY KTQFKWFISYCEQRYGGIVAAYNYWIAHNNY >gi|316915941|gb|ADCN01000022.1| GENE 86 119164 - 119589 394 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622415|ref|ZP_04665446.1| ## NR: gi|239622415|ref|ZP_04665446.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 141 1 141 141 258 97.0 1e-67 MTFNRYICFCAILESIGAIACMLMALIGNNLLGVIVAAIAALLWIGGEVWGMTAFRRQNP RRDELSDMHQGSAMQFALVSLVGILVIVGFIYTTLNLIDRSIVHIIPPMLLPALAMCALA ISDIRYLWLEHDAGTEGDDED >gi|316915941|gb|ADCN01000022.1| GENE 87 119579 - 119794 156 71 aa, chain + ## HITS:1 COG:AF1793 KEGG:ns NR:ns ## COG: AF1793 COG1476 # Protein_GI_number: 11499382 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Archaeoglobus fulgidus # 1 65 1 65 70 68 56.0 3e-12 MKTSLKLHRLQRGMKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLARVFGTTVEDLF SFDDEYKSESE >gi|316915941|gb|ADCN01000022.1| GENE 88 120116 - 120625 628 169 aa, chain + ## HITS:1 COG:no KEGG:Blon_0677 NR:ns ## KEGG: Blon_0677 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 43 169 1 127 127 108 90.0 7e-23 MKKKIMAVLATIAAVLGFGFATNTAMADDYGATVTYGGTTATVTFPAGTFQPNESVTVYY DDAIVADVQQIAEVSKTFTAKADGSLTLLYTFKASQAGKTIAVKAVGAVSGTKTATIQVP ATGTGDQSGTTTATTANTGAAIAPYGVAVVLLAAAGIALFAVRKNTTRR >gi|316915941|gb|ADCN01000022.1| GENE 89 120807 - 121367 494 186 aa, chain + ## HITS:1 COG:BS_ywlE KEGG:ns NR:ns ## COG: BS_ywlE COG0394 # Protein_GI_number: 16080746 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Bacillus subtilis # 1 129 1 122 150 63 33.0 2e-10 MQIMYVCTGNQCRSVMAEYYTRAKLADRGIGLQSGNITVRSAGTLHYPPHPADPMVIDLL KNDGIDANSHSSAPLTTDISRQADLILCFEREQISDLLEQNPLAIRKVFLFNDFVNACKH MHAEGPIAGDTAADKLIEIMDCVPMLRPFLPTALETEDPHRQSREVFERVYAEIKHGVDI MLGAVA >gi|316915941|gb|ADCN01000022.1| GENE 90 121442 - 121558 89 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHDCIIEEHLTYVLRSLNSTDLTNTKKSGNKDPQYQPY >gi|316915941|gb|ADCN01000022.1| GENE 91 121645 - 122079 895 144 aa, chain + ## HITS:1 COG:no KEGG:Blon_0676 NR:ns ## KEGG: Blon_0676 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 144 1 144 144 220 97.0 1e-56 MASLLQGFEEVQLVKPVGKTVLTVTDSAIRFNKATAEVLGFPAYVKVLINDKTKQIAVTP TTAKADNAIKFSKPEGKQAASVSVKEATLIEAVKAYFTLPEAPEGEIAYQSVNGTAYPES KTVIFDVANATAGTMKRRGRKKAA >gi|316915941|gb|ADCN01000022.1| GENE 92 122428 - 123651 1243 407 aa, chain + ## HITS:1 COG:HI1038 KEGG:ns NR:ns ## COG: HI1038 COG1373 # Protein_GI_number: 16272972 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Haemophilus influenzae # 5 405 6 398 400 264 37.0 2e-70 MTGYIARDKLTNTLRSHRNTPEIKVLTGVRRCGKSTLLEHYAQSLFDDGVPASNIFTRRF DSFDTPIGYSATDLHADLMQATQEAQPGPFYVFLDEIQDVPGWEEVVRRLHSRDDTDVYI TGSNARLLSGELATHLTGRYITIPVYPLSFDEYQRHHRAQGTTDSTDQLFSRYMMFGGMP GLFVTGQPDQDRATEILTSIYESIVLKDVAGRYGIRDIATLEKLSRYLFSTSGNLFSVNN VANTLASAGANASYATVDNQISALERSFIVYSAQQERMRGKELLRPQRKFYPVDNGFRNL ATGFNGSDRGAQLEGIVFMELQRRGYDVAIGSLPDGEIDFIAKRGNDKQYIQVTLNMTEE QTRERELAPLRRLGDAFPRTVLTLDWHSEGMTDEGIHITNVMDWLCS >gi|316915941|gb|ADCN01000022.1| GENE 93 124180 - 125079 1283 299 aa, chain - ## HITS:1 COG:NMB0062 KEGG:ns NR:ns ## COG: NMB0062 COG1209 # Protein_GI_number: 15675999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Neisseria meningitidis MC58 # 1 285 1 282 288 395 67.0 1e-110 MKGIILAGGSGTRLYPLTTVTSKQLLPVYDKPMIYYPLSVLMLAGIRDILIISTPKDLPN FEKLLGDGSHYGVHFSYKVQPSPDGLAQAFLLGEKFIDGEPCALVLGDNIFYGNGLGATL RKAVAKAEGGEGASVFGYYVDDPERYGVVEFDEYKKAVSIEEKPKEPKSHYAVTGLYFYD ERVVEFAKRVRPSARGELEITDLNKMYLEDGSLNVRTLGRGYAWLDTGTMDSLYEAGEFV RTVQRAQGLPIAIVEEIAYENGWISKEELLESAERYGKSPYGKHLKDVAEGKVVIVPND >gi|316915941|gb|ADCN01000022.1| GENE 94 125122 - 126210 1010 362 aa, chain - ## HITS:1 COG:Cgl0332_1 KEGG:ns NR:ns ## COG: Cgl0332_1 COG1898 # Protein_GI_number: 19551582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Corynebacterium glutamicum # 4 191 2 182 182 236 60.0 7e-62 MAFDFEKELKVTETNIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISF NATKGVTRGIHAEPWDKYISIAAGEIFGAWVDLRPGESFGQVFTTRLDPSKAIYVPRGVG NSFQALQDGTVYTYLVNAHWSLEQKKTYTFVNLADPELGIEWPIPLEESERSEADLHHPM LRDAKPMEPKRTLVTGCNGQLGRAVRAYAEAHGLRGFEYTDIDEFDFSDPAAYDEYDWSL YGTIINAEELSADKCEIGENHARAWTINAQGPALLSRAAKDHHVTLVHASTDKVYGADSE AKAIAPESVYGQTKAAGDIAVANAPEHYILRRSESADSRNIVDTLFQLLDSHAEYGVYAV GD >gi|316915941|gb|ADCN01000022.1| GENE 95 126217 - 127239 1050 340 aa, chain - ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 9 337 3 340 346 499 73.0 1e-141 MADEVFSPKNVIVTGGCGFIGSNFVHYVYDHHPDVHVTVLDALTYAGNLENIRGILGDRV EFVHGNICDAELLDKLVPGHDAIVHYAAESHNDNSIANPEPFLKTNVEGTFRLLEAARKY DVRYHHVSTDEVYGDLALDDPAKFTEETPYHPSSPYSSTKASSDLLVRAWHRTFGIRATI SNCSNNYGPYQHVEKFIPRQITNILEGLKPKLYGNGENVRDWIHTDDHSTGVWAILTKGR IGETYLIGADGERNNITVLRDILTVMGKSPDDFDWVKDRPGHDRRYAIDSTKLRTELGWE PTHTDFQKGLERTIEWYTENRAWWEPAKAATEAKYKQQGQ >gi|316915941|gb|ADCN01000022.1| GENE 96 127522 - 127587 114 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MADPNRPRHYEEEFKRQIVQS >gi|316915941|gb|ADCN01000022.1| GENE 97 127894 - 128235 206 113 aa, chain + ## HITS:1 COG:no KEGG:BAD_1369 NR:ns ## KEGG: BAD_1369 # Name: not_defined # Def: ISSdy1_ transposase OrfB # Organism: B.adolescentis # Pathway: not_defined # 1 106 131 236 328 87 49.0 1e-16 MLEHPEAERADPYEKDVERVWRDSGKVYGARKIRHALGHEGVTLSRRRVNRIMKRNGMAG SCSKAAYRPRPARPDDDPAPDILAREFNGHAPRTHLASDPAYARVGSSLFVFN >gi|316915941|gb|ADCN01000022.1| GENE 98 128270 - 128617 120 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 59 115 1 57 57 115 100.0 1e-24 VNRSQILVAVCRCLRQFARSSASHCSITGRYGSITDARGFLTDGTADRSSFARYLRTVGS LTCVFRAIDATDSPFRRKRRIDCTWGMLIIILSGPFWRRYKHHPVKTIPWSACSA Prediction of potential genes in microbial genomes Time: Fri May 13 12:58:51 2011 Seq name: gi|316915861|gb|ADCN01000023.1| Bifidobacterium sp. 12_1_47BFAA cont1.23, whole genome shotgun sequence Length of sequence - 120657 bp Number of predicted genes - 94, with homology - 87 Number of transcription units - 67, operones - 22 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 62 - 376 463 ## COG2826 Transposase and inactivated derivatives, IS30 family + Prom 405 - 464 3.2 2 2 Tu 1 . + CDS 540 - 746 151 ## BLJ_1983 hypothetical protein - Term 687 - 745 1.7 3 3 Op 1 1/0.273 - CDS 862 - 3201 2570 ## COG1511 Predicted membrane protein 4 3 Op 2 . - CDS 3198 - 5927 2723 ## COG1511 Predicted membrane protein 5 4 Tu 1 . - CDS 6220 - 6987 1084 ## COG0778 Nitroreductase 6 5 Tu 1 . - CDS 7170 - 7547 429 ## BLD_1503 hypothetical protein 7 6 Tu 1 . + CDS 7639 - 8352 647 ## COG0406 Fructose-2,6-bisphosphatase + Term 8377 - 8414 8.3 8 7 Tu 1 . - CDS 8330 - 8548 78 ## - Prom 8622 - 8681 4.3 9 8 Tu 1 . + CDS 8761 - 10086 2283 ## COG1653 ABC-type sugar transport system, periplasmic component 10 9 Tu 1 . - CDS 10340 - 11356 1195 ## COG1609 Transcriptional regulators - Prom 11444 - 11503 2.5 + Prom 11557 - 11616 5.5 11 10 Op 1 38/0.000 + CDS 11739 - 12593 1419 ## COG1175 ABC-type sugar transport systems, permease components 12 10 Op 2 . + CDS 12593 - 13435 1377 ## COG0395 ABC-type sugar transport system, permease component 13 11 Tu 1 . + CDS 13641 - 14246 822 ## BLD_1510 putative membrane protein + Term 14407 - 14462 -0.9 14 12 Tu 1 . - CDS 14450 - 14662 96 ## gi|227546886|ref|ZP_03976935.1| hypothetical protein HMPREF0175_1310 + Prom 14450 - 14509 6.1 15 13 Tu 1 . + CDS 14583 - 17780 4629 ## COG5492 Bacterial surface proteins containing Ig-like domains + Term 17802 - 17854 17.4 - Term 17801 - 17842 -0.8 16 14 Tu 1 . - CDS 17906 - 18859 1038 ## COG3464 Transposase and inactivated derivatives - Prom 18979 - 19038 1.7 17 15 Op 1 . + CDS 19014 - 19283 149 ## BLJ_1798 transposase-like protein 18 15 Op 2 . + CDS 19365 - 20777 732 ## COG1672 Predicted ATPase (AAA+ superfamily) + Term 20780 - 20851 27.0 - Term 20767 - 20835 29.1 19 16 Op 1 . - CDS 20840 - 22321 2302 ## COG1113 Gamma-aminobutyrate permease and related permeases 20 16 Op 2 . - CDS 22542 - 23111 651 ## COG1309 Transcriptional regulator - Prom 23179 - 23238 3.5 + Prom 23131 - 23190 3.3 21 17 Op 1 36/0.000 + CDS 23255 - 23956 290 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 22 17 Op 2 . + CDS 23967 - 27746 3191 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 27755 - 27793 1.5 + Prom 27756 - 27815 2.7 23 18 Tu 1 . + CDS 27934 - 29457 2204 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 29690 - 29749 5.5 24 19 Op 1 . + CDS 29797 - 31293 335 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 25 19 Op 2 . + CDS 31250 - 31354 83 ## + Term 31424 - 31472 4.5 + Prom 31395 - 31454 4.5 26 20 Op 1 . + CDS 31597 - 36138 6540 ## BLD_1519 hypothetical protein + Term 36158 - 36220 9.3 + Prom 36211 - 36270 4.4 27 20 Op 2 . + CDS 36350 - 40186 3717 ## BLD_1520 hypothetical protein + Term 40328 - 40390 27.6 - Term 40315 - 40379 28.1 28 21 Op 1 . - CDS 40463 - 40606 88 ## BLD_1521 hypothetical protein 29 21 Op 2 . - CDS 40609 - 41022 196 ## - Prom 41239 - 41298 3.6 30 22 Op 1 . + CDS 41105 - 41293 60 ## 31 22 Op 2 4/0.091 + CDS 41303 - 41905 449 ## COG1846 Transcriptional regulators + Prom 41908 - 41967 2.2 32 23 Op 1 35/0.000 + CDS 42092 - 43963 3002 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 33 23 Op 2 . + CDS 43989 - 45827 209 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 34 24 Tu 1 . - CDS 45978 - 47024 281 ## BLJ_1949 hypothetical protein - Prom 47121 - 47180 4.0 + Prom 47083 - 47142 3.9 35 25 Tu 1 . + CDS 47178 - 48596 2012 ## COG2211 Na+/melibiose symporter and related transporters + Term 48805 - 48873 12.6 + TRNA 48775 - 48850 78.1 # Ala CGC 0 0 36 26 Tu 1 . + CDS 49177 - 50187 1194 ## COG0313 Predicted methyltransferases 37 27 Tu 1 . - CDS 50214 - 50441 103 ## Blon_2429 hypothetical protein 38 28 Tu 1 . + CDS 50356 - 50535 87 ## 39 29 Tu 1 . - CDS 50582 - 51229 256 ## Blon_2428 hypothetical protein - Prom 51291 - 51350 1.7 40 30 Tu 1 . + CDS 51546 - 53411 2845 ## COG0143 Methionyl-tRNA synthetase + Term 53609 - 53653 1.3 41 31 Tu 1 . - CDS 53745 - 54341 -165 ## BL0171 hypothetical protein - Term 54349 - 54392 1.4 42 32 Tu 1 . - CDS 54450 - 55370 452 ## BL0172 hypothetical protein - Prom 55531 - 55590 1.6 - Term 55614 - 55673 13.3 43 33 Tu 1 . - CDS 55704 - 57230 2267 ## COG3579 Aminopeptidase C + Prom 57230 - 57289 2.5 44 34 Tu 1 . + CDS 57455 - 59683 2847 ## COG3533 Uncharacterized protein conserved in bacteria + Term 59726 - 59759 1.5 45 35 Tu 1 . + CDS 59825 - 60676 872 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain + Term 60803 - 60841 -0.1 46 36 Tu 1 . - CDS 60848 - 62005 953 ## COG1609 Transcriptional regulators - Prom 62187 - 62246 2.0 + Prom 62146 - 62205 2.3 47 37 Tu 1 . + CDS 62256 - 63788 1659 ## BLD_1538 alpha-galactosidase 48 38 Op 1 35/0.000 + CDS 64540 - 66450 273 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 49 38 Op 2 . + CDS 66461 - 68269 188 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 50 38 Op 3 . + CDS 68298 - 68366 67 ## + Prom 68401 - 68460 6.8 51 39 Op 1 . + CDS 68532 - 70997 2852 ## COG3534 Alpha-L-arabinofuranosidase 52 39 Op 2 . + CDS 70981 - 71193 182 ## gi|227546925|ref|ZP_03976974.1| hypothetical protein HMPREF0175_1349 + Term 71284 - 71321 -0.2 53 40 Tu 1 . - CDS 71362 - 73107 1473 ## COG3507 Beta-xylosidase - Prom 73154 - 73213 1.6 54 41 Tu 1 . - CDS 73264 - 74859 2301 ## COG3507 Beta-xylosidase - Prom 74922 - 74981 3.0 + Prom 74879 - 74938 5.7 55 42 Tu 1 . + CDS 74975 - 77107 2175 ## COG3940 Predicted beta-xylosidase 56 43 Tu 1 . + CDS 77223 - 78281 1284 ## COG1609 Transcriptional regulators 57 44 Tu 1 . - CDS 78393 - 79337 787 ## COG0657 Esterase/lipase - Prom 79378 - 79437 2.3 + Prom 79501 - 79560 4.1 58 45 Tu 1 . + CDS 79602 - 80636 803 ## PROTEIN SUPPORTED gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase + Prom 80832 - 80891 3.7 59 46 Op 1 35/0.000 + CDS 81060 - 82376 2268 ## COG1653 ABC-type sugar transport system, periplasmic component + Term 82429 - 82481 3.9 60 46 Op 2 38/0.000 + CDS 82515 - 83468 1565 ## COG1175 ABC-type sugar transport systems, permease components 61 46 Op 3 . + CDS 83465 - 84391 1459 ## COG0395 ABC-type sugar transport system, permease component + Term 84436 - 84492 2.9 62 47 Tu 1 . + CDS 84734 - 85066 217 ## BL0191 hypothetical protein 63 48 Tu 1 . - CDS 84995 - 86065 753 ## COG3177 Uncharacterized conserved protein - Prom 86096 - 86155 3.3 + Prom 86054 - 86113 4.6 64 49 Op 1 . + CDS 86138 - 86311 56 ## 65 49 Op 2 . + CDS 86362 - 87321 864 ## COG0084 Mg-dependent DNase + Term 87343 - 87381 -0.7 + Prom 87355 - 87414 5.9 66 50 Op 1 . + CDS 87464 - 89977 2955 ## COG3158 K+ transporter 67 50 Op 2 . + CDS 90071 - 90931 1138 ## BLJ_1898 hypothetical protein - Term 90925 - 90974 -0.9 68 51 Tu 1 . - CDS 91007 - 91711 809 ## COG1418 Predicted HD superfamily hydrolase - Prom 91744 - 91803 2.0 - Term 91772 - 91817 12.0 69 52 Op 1 36/0.000 - CDS 91835 - 92956 1348 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 70 52 Op 2 . - CDS 92953 - 94443 1763 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 94526 - 94585 2.7 71 53 Op 1 . + CDS 94785 - 97094 2112 ## BLJ_1894 hypothetical protein 72 53 Op 2 . + CDS 97094 - 98269 1000 ## BL0200 hypothetical protein 73 54 Tu 1 . - CDS 98229 - 98780 246 ## BLD_1561 hypothetical protein 74 55 Tu 1 . + CDS 98625 - 99032 194 ## COG3464 Transposase and inactivated derivatives - Term 99030 - 99069 -0.7 75 56 Tu 1 . - CDS 99100 - 99360 195 ## BLD_1563 hypothetical protein - Prom 99449 - 99508 2.3 + Prom 99150 - 99209 1.9 76 57 Op 1 . + CDS 99386 - 99778 239 ## BL0202 hypothetical protein + Term 99952 - 99991 6.1 + Prom 99818 - 99877 2.8 77 57 Op 2 . + CDS 100110 - 102515 1677 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily + Term 102519 - 102582 22.3 78 58 Op 1 . + CDS 102595 - 102795 182 ## BL0217 hypothetical protein 79 58 Op 2 . + CDS 102807 - 103214 124 ## BL0204 hypothetical protein 80 59 Tu 1 . - CDS 103237 - 103455 98 ## gi|227546946|ref|ZP_03976995.1| hypothetical protein HMPREF0175_1370 - Prom 103505 - 103564 1.9 - Term 103527 - 103571 4.4 81 60 Tu 1 . - CDS 103588 - 104529 1303 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 104574 - 104633 2.7 + Prom 104782 - 104841 2.2 82 61 Op 1 . + CDS 105010 - 106788 727 ## EF2179 hypothetical protein 83 61 Op 2 11/0.000 + CDS 106838 - 107860 1192 ## COG1088 dTDP-D-glucose 4,6-dehydratase 84 61 Op 3 11/0.000 + CDS 107868 - 109319 2146 ## COG1091 dTDP-4-dehydrorhamnose reductase + Term 109347 - 109394 12.4 + Prom 109363 - 109422 2.0 85 62 Tu 1 . + CDS 109460 - 110356 1233 ## COG1209 dTDP-glucose pyrophosphorylase + Prom 110510 - 110569 2.1 86 63 Op 1 . + CDS 110690 - 111688 277 ## BLD_1571 glycosyltransferase for cell wall membrane 87 63 Op 2 . + CDS 111726 - 113726 641 ## COG3754 Lipopolysaccharide biosynthesis protein 88 63 Op 3 26/0.000 + CDS 113733 - 114581 700 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 89 63 Op 4 2/0.091 + CDS 114605 - 115849 570 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component + Prom 115925 - 115984 1.7 90 64 Tu 1 . + CDS 116156 - 117397 370 ## COG0438 Glycosyltransferase + Term 117445 - 117492 -1.0 91 65 Op 1 . - CDS 117424 - 118584 799 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 92 65 Op 2 . - CDS 118581 - 119429 265 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 93 66 Tu 1 . - CDS 119795 - 120061 177 ## BLD_1565 phosphoglycerol transferase - Prom 120134 - 120193 1.7 94 67 Tu 1 . - CDS 120211 - 120654 211 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 Predicted protein(s) >gi|316915861|gb|ADCN01000023.1| GENE 1 62 - 376 463 104 aa, chain + ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 4 99 282 376 383 125 64.0 1e-29 MQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFP KGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELLDAA >gi|316915861|gb|ADCN01000023.1| GENE 2 540 - 746 151 68 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1983 NR:ns ## KEGG: BLJ_1983 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 68 1 68 68 114 95.0 7e-25 MYHDKAQVQRAADQSLIERGVELWVYRCEFCGCWHLTHRDPQSSYRHVPLNQQLKPHSRK KGYKPRRR >gi|316915861|gb|ADCN01000023.1| GENE 3 862 - 3201 2570 779 aa, chain - ## HITS:1 COG:MTH1858 KEGG:ns NR:ns ## COG: MTH1858 COG1511 # Protein_GI_number: 15679846 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanothermobacter thermautotrophicus # 1 776 1 628 631 255 26.0 3e-67 MKLIWKIFVRDVRQATRNVIAVIVAMGLVIVPALYAWYNIAASWDPYGNTKALKVAVANV DKGYKSDLMPITINVGETVTNTLRANHDLDWQFVDRAKAIDGVNSGEYYAALIIPKSFSS DMMTLFSPKIKHAKLEYYLNEKINPIAPHITDQGAATVATTIDQTFVKTLASVALDLVSN VADYAQSPQMEQYVNNASSHIATMSSRLTGTASQMDSYANLLGAANSIIDSTDKLLGSTG SAAATTKKALKQTRNGVSSLDKALSGATDGVGTALQQAGSSYDTIAKQIDAAFADVGSQS SQISNKLTDMQSKVEAQADSFGKYAAALRDLAKQAASLPVGGDTVAAQLNAAADQATKAQ QSMQQAATALGDAATHIANGTADADTARRDLKSQIAAAKQSITQASDTYKSTLKPQLNNL TSSMDEVTTQASSVIDGLASTVSSVSGLSGGVSDSLTDIQSALTDAASALTRSAKKLDNL SSQLASITNGGTIDLSVISSAKPDAIASMLAAPVAVDRIALYPVANYGSAMAPFYTILSI WVGAIILVAMLKVSISDHEKARILGLGNDLPLGSEVGLREAMIAGRIAGPAAALDVLKKP RAEAPGNARQFGLRLHHEYFGRYMIFGFLALLQGTLVCLGDMFYLGVQCEHPIQFLMVGW LSALVFSNIVYTLTLSFGDIGKAIAVVLLVMQVAGSGGTFPIETLPTFFQVVSKWLLFPY AVDAMHSAMAGSFGMEYWVSMGKLALFLVPSLLLGLMLRKPVIRFNDWVIRNLENTKVM >gi|316915861|gb|ADCN01000023.1| GENE 4 3198 - 5927 2723 909 aa, chain - ## HITS:1 COG:CAC2583 KEGG:ns NR:ns ## COG: CAC2583 COG1511 # Protein_GI_number: 15895843 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 694 1 676 709 282 28.0 2e-75 MRTVWQVFLRDCRRILRNPVAVVVTLGVAMLPSLYAWFNILANWDPYSATGNLQVAVANE DQGTTNDLVGHLDAGRQVVKKLKQNDELGWRFVDNEEQAVHGVETGGYYAAIVLPKDFSA SLVESVTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSAFVTTVATTVASAVSE AGGDLDQVTGKVQHDTIDDLNTVMSTLNTVQDSLTDLQDTLAQSDTILADAKQTTASLKQ TVAAAQNASRQSGTLLAETQAGSQAFSTTLVGALDSSSAQLSGLAVHVNNAAGSITGSFN SAQNSVDTITNTLSAPLNATQTSISDLKDALTKAGIGKDTTDPVGQNIWKQIDALDSLIS KQQTQLNTFHTDTTQFINSGKDATTNLSGAMTNTTTGGIAALNTARGSLTGTVMPSLTSS LNSFAALNGTLDGTLTSLSGTLDQADGLFDQLVDTLNQTKTTISSTQDSLRQVASDVATV RTDIATLDSSAAYQKIRDTLHLDDKGFGDFMGNPVTLTTKVVYATDNYGSAVTPFYTNLA LWVGGFVLIAIYKLEVDREGIRRITATQAYLGRWLLLVTIGFLQAIIATIGDLVLGIQCE HPLLFILAGIFCSFVYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPNFFR ELHPWLPFTYGINAMRGPIAGLYANHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFD HRLGGTDLMITEHNSMVNEQVSLNSVFRTVSDSKELRDIIAHRAHRFFARYPKMIVAGLT LLAVLPFVFLVLLFVTQEKIAMLTSWILSIILIDAYLIVVEYARETYAMQLGVSAMSADE FRNVMLNGYAWRRFHGHGRHEAAMGSNPDIGETTERLTLFGDQAAEPTAHTAQFEQSGQS GQSGQGGAR >gi|316915861|gb|ADCN01000023.1| GENE 5 6220 - 6987 1084 255 aa, chain - ## HITS:1 COG:lin0935 KEGG:ns NR:ns ## COG: lin0935 COG0778 # Protein_GI_number: 16800005 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 4 230 2 223 246 135 35.0 7e-32 MVTNATIEALLGRRSIRKFKDEAIDDDTRATLETVAQHAVSSQFLNDWSAIRITDPATKA KLAEFGHQPYIATAPLLYVFVIDEHRNARIAERKGIDPASDEFHLKYSYRFTQAQNDAVL ALHAMETAAYSLGLGCVILGSLLNNIPGLIDVLNLPEYTYPVLGLAIGKPDQNPTVKPRM PRTMQFFENTYPADADGVLDQLPAFDEEVHRYYDLRQADRPVDAFSDQVATISRQDVSHQ TLLDKAAAQGFRLDQ >gi|316915861|gb|ADCN01000023.1| GENE 6 7170 - 7547 429 125 aa, chain - ## HITS:1 COG:no KEGG:BLD_1503 NR:ns ## KEGG: BLD_1503 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 125 1 125 125 204 96.0 1e-51 MSDETNTDFPSSADRAVDSLHRIDEKVNRLREDRLNDPDSLGDKLIKSAVPALAGLVAGK AFQMIWDKGTSKRNLRKGLAADAPQSLAMSLAFAAVSAALGAVVSQLSDRGSKAFVDHRH RKPSR >gi|316915861|gb|ADCN01000023.1| GENE 7 7639 - 8352 647 237 aa, chain + ## HITS:1 COG:mll2186 KEGG:ns NR:ns ## COG: mll2186 COG0406 # Protein_GI_number: 13472025 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mesorhizobium loti # 24 236 10 191 193 114 38.0 2e-25 MSEQNVNGTVAVENSRGGNGFLVLLRHGQTVWSESGQHTGRTNIPLTAVGEQQAADAGRR LREAFPEGFSQGCVFSSPLKRACQTAELAGFADHGVLDGIAEWDYGRAEGRTRQQVSEAS GFEWDVWRDGPRSLTPTLEGDWVETLPSGEQVPVHAGPGETLEEAAVRAKSAIDEITPLL KDGHNVLLVAHAHILRILTSQWLGVDPHFARLLRLDTAHYSVLSVYKGDNVIERWNA >gi|316915861|gb|ADCN01000023.1| GENE 8 8330 - 8548 78 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQAFAIMRALTYLSWQSIATYTHQKKQHADAIVCKSFIDIPQFPPQTIKARPQQQAGQRN HSATGARRSTVR >gi|316915861|gb|ADCN01000023.1| GENE 9 8761 - 10086 2283 441 aa, chain + ## HITS:1 COG:Cgl2408 KEGG:ns NR:ns ## COG: Cgl2408 COG1653 # Protein_GI_number: 19553658 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Corynebacterium glutamicum # 7 440 8 441 443 349 45.0 8e-96 MNRTVKSAVAMAAVAAMSLGALAACGSSTSGDDAKGKVYYLNFKPEAADQWTALAKEYTK EKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSNTDVYKEL ANQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVAD DMQARKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPN YKKIFDLYIADSTTDPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVG MMPIYTGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDTGKKSLSQDMG FTTPFKTFDDVKFDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKVGQALLEYAQGTG KWDAVKTAFVDGWASEYEASH >gi|316915861|gb|ADCN01000023.1| GENE 10 10340 - 11356 1195 338 aa, chain - ## HITS:1 COG:CC1627 KEGG:ns NR:ns ## COG: CC1627 COG1609 # Protein_GI_number: 16125873 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 1 335 1 331 335 123 29.0 5e-28 MATSIQDVAREAGVSISTVSRSFTRPDLVSAKTRERVLAIADKLNFSLSRSAAALKSGRS LRIAVLMSGHIRLWFTASVIEGLNEVLHTQGYDISVFQISSIEERKEFFEMLPVRRNADA VIVASFDIDNNEIAQLASVGVPIVGINSVEPEARGFTAAVNIDDVQGSTLAARHLINLGH RRITYISTNREVSLSFSVQSRFDSFTACCRREGIEPQVIVCKVDDDGRYEISDVVNQLIS QDEMPTAIACQEDGIALPLMFQLERNGFSVPGDVSLIGYDDSFYTGDIGLTTIRQDPVEM ARVAARMTLDLIDEKPIEQPYIVFPAQLKVRSSTSRVK >gi|316915861|gb|ADCN01000023.1| GENE 11 11739 - 12593 1419 284 aa, chain + ## HITS:1 COG:Cgl2407 KEGG:ns NR:ns ## COG: Cgl2407 COG1175 # Protein_GI_number: 19553657 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Corynebacterium glutamicum # 9 284 5 281 281 270 51.0 3e-72 MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWVGLKNYGKA LKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIIL GYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEA AAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALN ITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA >gi|316915861|gb|ADCN01000023.1| GENE 12 12593 - 13435 1377 280 aa, chain + ## HITS:1 COG:Cgl2406 KEGG:ns NR:ns ## COG: Cgl2406 COG0395 # Protein_GI_number: 19553656 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Corynebacterium glutamicum # 2 280 22 304 304 253 49.0 3e-67 MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGLEN YVRGIETTQFFASFGWTLLITVGSVALILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIV PFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPQELEESAMIDGA SVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTVSVAVQYLKGGYG SVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG >gi|316915861|gb|ADCN01000023.1| GENE 13 13641 - 14246 822 201 aa, chain + ## HITS:1 COG:no KEGG:BLD_1510 NR:ns ## KEGG: BLD_1510 # Name: not_defined # Def: putative membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 201 1 201 201 334 99.0 1e-90 MNWLAPDSKFMRAWSNLVDGVWINILMLVTSIPLITIGAALTAGHDACRRSIEGEGKGVT ANYFKSFKANFIKATLLWLPFLVALIALVWSWIVLQITPLLIIKFALTILWLIGFEWVFA LQARFENTVAGTLKNAFIFGISHIAMTVALVIVDAVFVALLVASWFYMPGGLFLLVILGY GTMLMLHIPVTERVFNPYLID >gi|316915861|gb|ADCN01000023.1| GENE 14 14450 - 14662 96 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227546886|ref|ZP_03976935.1| ## NR: gi|227546886|ref|ZP_03976935.1| hypothetical protein HMPREF0175_1310 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 70 1 70 70 100 100.0 4e-20 MAYVVGTTATIVDIAINDAAIFFQCFTASLLVLCLDPLVGCLVRLYVNANIICDDTITAL RLSVPDSLCI >gi|316915861|gb|ADCN01000023.1| GENE 15 14583 - 17780 4629 1065 aa, chain + ## HITS:1 COG:CAC3086 KEGG:ns NR:ns ## COG: CAC3086 COG5492 # Protein_GI_number: 15896337 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 261 352 251 345 498 67 51.0 2e-10 MKHWKKMAASLIAISTMVAVVPTTYAMESEDSQPQTTDTATVQTTKAAEPTLLASWDFTG KNGTTNSAIADSTGKYNLTLKDSAKIEQYGDRSNNEALSLRGDGQYAQIDDQLFKDAGDS FTLEFASKTRHDDSGKFFSFIVGKDGSNDANTTDQANANKYLMFYNSKTAIKGVISNNNW GNEQGSKVTVSGNDNSWADYKIVVDGTNLAVFRNNALIIFKANTGIKMSDLGATTAYIGK SFYSVDEYWNGAMDDIKVYRGADLTMPTAVAISGTGVVNNKLTLIEKDSTKLTATVTPDD AVSKNVTWSSSDESVAKVAADGTVTGVKAGTATITATTELGGVKAELPVTVEPMNAQNAA AADLDAAIAALKVPAAENLPLVAKGTKNGSAITWKSSDEKLITSTNEKYENKTTGADDPY RGAGIINRPAYGDGDSKPVTLTATASYNGGEKVTKTIEVTVKEKTRIAPDTGYAAVTFES DSNGGEKAWVASTEKNDFFTFKTRNNGQAVLTNDADTGGLRDMFVLRSHEGDKYYLIATD LKVSSMGWSQNQVNGSRKVEVYESTDMMNWTRTNGDGNGGITINTPNAGMTWAPEAYWDD DLNAYVVFFSSRMFTDDTRTTPVKNDKTGNSSYAQVRYAITRDFVNFTEPQMWQDTGYSR IDSTVRKIGGYYYRFTKNEQGGAAGDYITTGKSIFLERSKVLTAPTTEASPGQDPNTGWQ LLEQALLPFEGPETIKLNKDDELNTKDDDGYILLSDNFAYRAFMTTGAELSKTTWDNPMT KRYPDFNNEKKPVKAEPGAQGYITQGANGGLPDKVRHGAFVNVPESVLKVTKSWTAANPT HIEAVDSTTKAVYNAGTRELTATVTAADKGTLAGSVKFSAGDWSKTVKLDAEGKATVTLP ASVSGTVAVAYDGYTDGLVNPSDTTVDGIEQGKVDLAELNKQIAAAEALKESDYTADSWA ALAKALQVAKAALASSDQAVVDKAAADLSAAIAALQKAETPTKPDTGDGDNKGDNAGDKT DNKTDDTKSDGKLPATGAAVYGVSGAMVLLAAAGIALSIWRKRRA >gi|316915861|gb|ADCN01000023.1| GENE 16 17906 - 18859 1038 317 aa, chain - ## HITS:1 COG:MA2406 KEGG:ns NR:ns ## COG: MA2406 COG3464 # Protein_GI_number: 20091237 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 3 309 91 397 403 265 42.0 6e-71 MPVPAPWARPGSGFTLLFEAWAVEMARHLPVSTLAEQLDETDTRLWRSVAHYVDEARRLE DYMGVEAIGIDETSRRGRNCITVVADLVEHDVINVTPGKDPATVERFSRDFMDHNGVPEY VRLVACDMSLGFRKGIREHLPHARRIVDRFHVARHANEAVDKAGKTEGRSNPLLKRTKYL WLRNEESLTELQVETKRNLTRQRLKTGRACRMREVLQDIYTDSRTPSEAWVRLHRLCSWM MHSRLEPMKDFARMIRRHFAEIVAYFEHPYTNAVLEGADSVIQNVKRRARGFRNMDYFAT MIYLTCGRLDLKAVTTT >gi|316915861|gb|ADCN01000023.1| GENE 17 19014 - 19283 149 89 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1798 NR:ns ## KEGG: BLJ_1798 # Name: not_defined # Def: transposase-like protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 70 186 255 255 115 78.0 4e-25 MKEPARLVRRRFAEVVAYFEHPYANAVLEGADSVVRNVKRRACGFRDMDYFATMVYLTCG KLDLKAVTTSPSVRVFCKLARTRTSSQLV >gi|316915861|gb|ADCN01000023.1| GENE 18 19365 - 20777 732 470 aa, chain + ## HITS:1 COG:PH0976 KEGG:ns NR:ns ## COG: PH0976 COG1672 # Protein_GI_number: 14590821 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Pyrococcus horikoshii # 3 424 11 422 471 276 38.0 4e-74 MAFIGRDDDLKQLQECFTERRAQLVFVYGRRRVGKTETLIQLAKDKETLFFAAQNATKDE QLASFSRLMFEAGAPGKDYLSQYPSWERALTELTRLPEPSDGGRRLVIFDEFPYLVKSDP SLPSVLQNLWDHTLRHANLMIVICGSAMSFIEKELLGEKSPLYGRATGILKMLPMPYWDA AQFFPNYSGEDKALAYAILGGIPRYLEEFDPDETIDANVKRHILRRIAPLYSEVEFLLHE ELRETAKYNSVIRAIALGATSLNEIATHTMMANATVSSYLANLMELGIVEREFPVTAKPK ERAKGSRGLYQLSDNFFRFWYSFVFPYRSELERGDVEGVYERHIKPVLHDFAGKPFEGLC REWMWRESAAGRLPFRARAVGRWWDRQDEIDVMAVDNASDAAIVGECKFRNAPVDRSVLN LLRDRAARTGIGQRTYLLFSLGGFDQSLVDDAAASQSDVQLVGIDELFHE >gi|316915861|gb|ADCN01000023.1| GENE 19 20840 - 22321 2302 493 aa, chain - ## HITS:1 COG:YPO1743 KEGG:ns NR:ns ## COG: YPO1743 COG1113 # Protein_GI_number: 16122000 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Yersinia pestis # 20 492 8 449 457 395 47.0 1e-110 MSTADAPKKSRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSIL LAYLIGGLAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMV ELSVVGKFVNYWFPAIPTWVSAAVFLVVICAANLLGVSKFGEFEFWFAIIKIVAVIAMIV GGLAVIIFALPTASGIKASFANWFTLEGGFFPNGLMEQTKDGTWTGLLMALVVVMFSFGG TELIGITAGETEDPRRTIPRATNDIIWRILVFYIGALGVIMAVIPWNTIGGDDVPSPFVQ IFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNAKGVPV AGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVAAGGAP EDSELAGLSGQEALDAIHFKLPFAKVTPWVVLAFLALVVVLMCFSTSYRIAVIAGVIWLA ILFAAYQLTQAKK >gi|316915861|gb|ADCN01000023.1| GENE 20 22542 - 23111 651 189 aa, chain - ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 9 183 7 179 188 108 33.0 6e-24 MAKELTESRRTRYTRRAMQDALIELLRNQPLGSITVKALCERADVNRSTFYAHYASIEEL LHDIEDETMAWVTTALEQLLAQPDSAGIEHVIERICQYIADNRKHLQVLMSPKADIGFQQ QLLGLIYSQRGVGEQLQSSAGYPAEAQMRMRFAVSGSIGLLQYWLATDLAASPESVSHTI FTMCMPATQ >gi|316915861|gb|ADCN01000023.1| GENE 21 23255 - 23956 290 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 230 2 228 245 116 34 6e-25 MAYIEFDHVVKEYPSGSSVIRALDEASFTAEQGELSVILGQSGAGKTTALNILGGMDTAT TGRVVVGGRDITGLRKKGLVTYRRNDIGFVFQFYNLVPNLTALENVELASQICPDHFDPA ETLYKVGLGERMGNFPAQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQL LQDICQTQGMTVMIITHNSALAPMAHKVIRFRSGKVTSEEVNATPQPIADIEW >gi|316915861|gb|ADCN01000023.1| GENE 22 23967 - 27746 3191 1259 aa, chain + ## HITS:1 COG:lin1187 KEGG:ns NR:ns ## COG: lin1187 COG0577 # Protein_GI_number: 16800256 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Listeria innocua # 44 1259 8 1136 1136 439 28.0 1e-122 MLAARHSVKRPVKQARRSVKQSVKRPNLDDNGGRGAGVSAVFAKDTLRCWLRSWKRFVSI AVITLLGVAVLTGIYAGCRDAFLAAGRFYDQQGLHDLQVLSTYGLTDDDAAALRRIDGVQ TVQPERSQTVTTLVDGTKKTVTMQEIGTEGLDQPYLQQGKLPNKAGEVAVTQQFLNDSGL KIGGTITVTPQDTSSSVISVAATETDDSKNDDSRNDDSNNADTVGVAANASASDAKSDAN TDADAEQSPQFPTKLTITGVVLDPRDLNNPDGYSGMTSFRSTSSEDYTFFAPSDGVTGNI YTAISVAVTGASDFDTFSDAYDEAIKTVADRIEHQIQATRQKARRQQIVSSAQRKLDDAK DEANEQLDEAQKQIDDNWAELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIATAR QQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQID QMLPMIQQANNLLAQLDPNIDLNSPTWQAIKQLLARLGITVPEVPSISDLRQQLTAKQTE LQTQRDSLAQQKADLQRTLNETIAPAQSTLDQQNAQLTAKEQEAAAGEAQLNTKSAELEA NAATLETQSAQLEAQAAQLASGKRQLEEGERQLKEGEQQLADGKAKLDDAQSALDAMRSE AESEFAKQQRRIDDVANARWYVQTRASIDGFSSLKSDVSSIESIGRAFPIVFLLVAVLMS LTTMTRMVEEDRGLIGTYLGLGYGGLAVSSRYLLFALLACLVGGGIGLLVGFLGIPAFLM VVIEGLYILPGVRLEYDWLYGSAGIVLFVVGVGVVTALACREEIRHTPAALMRPKAPKAG ARILLERIRPVWSRLNFLGKVTARNIFRFKSRLIMTVGGVAGCTALIICGFAINDTVDTT GVKQYEQIYQYDLMVVANDDDAAAMRKQVAQDGRATETLNLRVDSGEMSNAAQESETVQL MTVPNNSLNKLNDMVTLEEAGDDGWFELPNIFGKAGGGTVALDDSGVIVAKSAANSLDIH AGDTVTLSNGGSGRAKVKVAAVTRNLIGSDVYISERLYDQKFAADGVTSSASGDGTASTL TWNAMLAKLKGSETEQAEYADRLGEESSVLKAVSCAHLAATFKFDLMGAVVALIVGLAGG LALVVLFTLANTNVSERIREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWI GGLLTAALNMPSLYFEVEVHWYSYAIAVVATLAFALLVQLFTNPVLDRVDPVSSLKSVE >gi|316915861|gb|ADCN01000023.1| GENE 23 27934 - 29457 2204 507 aa, chain + ## HITS:1 COG:SPy1654 KEGG:ns NR:ns ## COG: SPy1654 COG1113 # Protein_GI_number: 15675525 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Streptococcus pyogenes M1 GAS # 27 491 14 457 459 468 53.0 1e-131 MADTNVNGGTQQATGKLKSVESLDQTNEMERGLSNRHVQFIAIGGTIGTGLFLGSGKSIS LTGPSIIFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAA LVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSINLIAVKVFGEVEFWF SMIKITLICAMIATAVVMIVIGYHYPAVQIHGVDHVSPAGHAGFDNLFANFSFAPNGWMA FLMSFQMVFFAYEMIEFVGVTVSETKNPRKVLPKAINEIIVRVLIFYVGALVAIMCIVPW TSFKPNKDGSFASPFIMMFQYAGLNWASALVFFVVITAASSALNSLLYSAGRHLYQLSEV SPNPTLNKLGQVSDRKVPARAILVSAALILLSPIVNAIPGVSGAFVLFSSASSAVFLFIY ILTLMAHRKYRRSADFIPDGFVMPAWKVLNTVAIVFFVFIYLTLFLADDTRNSAIAGLVW LVGFGGFSMLRERYRSRDLKAALEHKE >gi|316915861|gb|ADCN01000023.1| GENE 24 29797 - 31293 335 498 aa, chain + ## HITS:1 COG:FN0191 KEGG:ns NR:ns ## COG: FN0191 COG2865 # Protein_GI_number: 19703536 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Fusobacterium nucleatum # 1 387 1 388 477 270 38.0 7e-72 MTQDELMQVLQAGESSMVEFKRCSELPHTDTFETVCSFANRSGGSIYLGVDDDGQVLGVD SKRVSEIERNVVNVVSNRKMFEPAPMVETEHIEYDERIIVRIWVAPSSSVVRFKGAVFDR IADVDTHIESDIQISQMYIRKQNYYSERRIFRYVTPFDLRPELIARMRQLAVAQRAGHPW GTMSDEELFRSAKLYDRDYTTGEEGFNLAAVLLLGKDEVISSVCPAYITDAVVRRDNIDR YDDRLMVRTNLFDSYEQLREFTERNLPDRFVLKGDKRVSPRTMIARELVANSLMHREYSS PVVARVTIDNESIRTVNASRSFFEGRMKLGEFTPMPKNPIIANVFVQTGIAEQPGSGLRN LIRASRQYTEREPEFRDGDIFEATIPIVPALKTVDGSGFASVRSVVEKDAEEGARLIGGE RVDGKKADATASGEIDSRAAMLSAMNRRLTEVDYVTVPELAKITELDNRTVRKFLNGLVA QGKLIAEGNTRGRRYRKG >gi|316915861|gb|ADCN01000023.1| GENE 25 31250 - 31354 83 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKATRVVGVIGRDSGRDISMQWDSLKGYGKYDS >gi|316915861|gb|ADCN01000023.1| GENE 26 31597 - 36138 6540 1513 aa, chain + ## HITS:1 COG:no KEGG:BLD_1519 NR:ns ## KEGG: BLD_1519 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 1513 1 1513 1513 2449 98.0 0 MRVLSKSLAAMVAAATLVGGGAFAVAGTAYAADNDAITVTPNPWYANSFDGWGTSLAWFA NATGSLGEESAITTNLGDDASKAKAVEYGKQLREQFYQSIFGDEGLDLNMARYNVGGGNA SDVAYGYPFMRQGAAVPGTWKDDATGSGTYGNGVTTKQADKDKLAAAFDPTDDNQYDFSK SAAQDWWIERGATGDNPDITDVEAFANSAPWFLTNSGYATGGYNSGSNNLANPEKFAQYM TKNVEHLESLGANVDTVEPFNESETSYWGTPGDMASKYTDESDDNTKLINNYWDKYYSDK DKSVTPYSNALKKPQEGMHVNNAQQQQTITALAEALKDNDDTIIAATDATNSADFVKSYN QYPQAIKDLIGQYNVHAYSDSNQMQSRDIAQADGKKLSMSEVDGSWQSGSYNPYGFDNAL GMMSKISSNVTRLQSKDFTFWQVVEDLYNMQMGSNVNPAGENTNWGTVLIDFDCTVAGKD GKLYSERRVNNNGGTADGLEPCTVIANAKYNGVKAITHFIHAGDKVIANNDEDNNMTATS ADGKTQTVIHRNSGTSDQTFVIDLSKYGEIADNAYGELYLTTETSAEDKNVGVDSATPEV FAKTSNVKQAEGSVVIDKAAKTATVTVPARSIASIQLTGVTGYAKDAAVETGDTYQLVGK QSGKAVADTTSGDSALSLANVASDAENAKKQTWTFTQIEQPTDSERPDLKAYVITNAEGK VLVSKDGTNALSNETVGAAKSDPAAKWILNTSDGSTYQLLNAATKTNLDVDNSGTTVGTK VGLWQSPSGTSPSANQTWTLRNVTPTSQKTVNVQTAVNEKAVLPVEVTLYYTWGEGKATV ANWDTSKVDVAKEGAYEATATATDVYGNEFNVTATVYVGALTVSDPVSATVLAGTSASEA KAALEAAPVYLHVKASPAFEGDAAKVTWNFDGLDTKLADAKAGDNIAVTGTYQLDDATTI ALKGAIYVTAATPENVADTASNLTVTNQQTEYSKGDQWKKLTDGDTSAEAWVTWNSAGDY SASPTATIDFGSECELSSVTITYGDKAPASAKAEYATDGETWMQLGSDVKPAAGQTVTFK ADKGTVNATKVRIVNTVNNDYMNATEIQAFVTPVQGAAKNIAAASGTNFSVNFQEGASAS KAIDGDTTSKGWSTWASTASTVDPVATFTFDEAQTITEVKTFFYYDGRASWPKSQTLEYQ NEAGEWHGVGTKDGWKIQAGDAGSGSDGITAADTPTVDFVLGTPVKAKAIRLTNTLQDTK VYINVAEIQVFAQDSTVLTPQPASDATLGDLRLDGETVEGFDPSKTDYTVDLPVDAEANP VLQAFATDNAAAVKVTGDAVENGKLGGKAAITVTSADESETKTYTVTFNAFTLASLKVIG PTKTEYAIGDKLDTAGLKVTAVYQSVDKTKEVPVALDDPQLAIGSFDSTTAGKKAITVSY RGVTATFNVTVKANAVAPGPEEQKPGNTNKPGATGNGNKNTVANTGSSVAAIAGAVALLA AAAGALFMLRKRA >gi|316915861|gb|ADCN01000023.1| GENE 27 36350 - 40186 3717 1278 aa, chain + ## HITS:1 COG:no KEGG:BLD_1520 NR:ns ## KEGG: BLD_1520 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 1278 1 1278 1278 2144 99.0 0 MKINDKGKGALIAAITAAATLLSCGLAAASASAAGVDYLPTIGQVPTYTKFQPTADPGKN ASDYFQPYWYAKNANDNGGTHIQAHGGQVVKVGDAYYWYGEDRSNGYDNSPGVHAYMSTD LYNWTDLGVALRAVTSKSQLTDKSNADYAYFDKAYNLTKSDGSVDAAKADAIFPYLNTNP DQDGDGAVDSVQGIFERPKIIYNKKNKQYVLWWHSDGSTTPGGSNYARALAGVAVSDNPA GPFTMVGAYRLPNQNNWKEAAGNPSWGENGDSRDMTVFVDPKDDSAYVLYSSEANATLYI AKLNDDYTNVVKTTNVDQSEGQKQYSADGQYPYILADATTDAPVRGEDFQIVKQNGSLEA PAVFQYDGRYNIIASGATGWAPNKQTYYTADSMLGNWTRGVEKDDVNENTWYNNMPEGAD GLLSVGDTRGTTFGSQSASVLAVDQEKGHFIYLGDRWDSGKADSTYVWLPLTIGENGTIE MHNPAQEGEPDGWDLSYWGNHGSAKGKLVNWTVETGDDLPKTVNTGGTVTLPDTVNVKEG DDTIATKVTWNVEGGTAVSKSTKAAGNTYAFNVPGTYTITGTLAESSNFNPGRTFRRTID VSCSNPISGSWKEAHWKGGSACQVSASGGAYDFTITDNANRGVWTDRNEGSAVYQPDALD VNETLETTVKPLDLGGNGDPRAGLVVRNGLTGANGGKGYATLLASPSGVYMQYDSNADGY IDKETSHVGTGFGDQVQLKLERTSTDTLKGYWRASANDEWQDVATVTLTGADVTGLDAGA FATSNSNAGAFTVAFNGTAFGSQTAAVESIAAKDPEATIAKGQMLALRDVTVTATLTNGK TRVLEPSEYTLEGFDTTKLGEQTVTVRLVADSSVTATFTVTVESNLARLFCSSAAASKYE PASSWASASTADLTCDNNLSTNWSNWGTGDTSPWLSYTFDKAYQLGKLSVAVDKAKGEAA PKSFTVSYLAEDSATWTDATLPAVTVNGAAGAVTEADVSALPATKGIRLNFTYADGNDYA KIAEVRIAEGEATPKPQPSSNANLADLTVDGKTVDGFSADITEYAGALAGDAASYPTVEA TAADAKATVQVEQASTENSGVATVTVTAEDGTAETYTVTFGELPQLAELAVEVTKDSYQV GDKFNAADVKVSAIYKVGDTETLRKLIDPTDGDLKFTGFDSATAGTKTITVSYRGVNATF EVAVTATEVTPGPGEQKPGDTNNPGNTAKPGNTATNKPAANGAAPLSNTGVAVAAIAVVV VVLTAAAGALLVIRKRRA >gi|316915861|gb|ADCN01000023.1| GENE 28 40463 - 40606 88 47 aa, chain - ## HITS:1 COG:no KEGG:BLD_1521 NR:ns ## KEGG: BLD_1521 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 47 3 49 49 73 100.0 2e-12 MIRGMNLCSIAGCTHEAEEAGMCNMHFTSALVHGALHYTAGGRPSHC >gi|316915861|gb|ADCN01000023.1| GENE 29 40609 - 41022 196 137 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRDEITRKTSELSTPDTPAISLLKTVIQRKKKWHFSRATLPFRLAKRKSLSNAWEKSAG SPAERPLPLQRRNSIRIPKSHTTKPHKSTCTRPTTPQNAGKDVIQATESVVPPRQCNNCP LCSEGRWRHGCHPKEGV >gi|316915861|gb|ADCN01000023.1| GENE 30 41105 - 41293 60 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGALRPTGLSSSAFSTRYLMEHNANVATVGPANILRRRPEVNIYAAFRISKSVECVHYAF QK >gi|316915861|gb|ADCN01000023.1| GENE 31 41303 - 41905 449 200 aa, chain + ## HITS:1 COG:L131803 KEGG:ns NR:ns ## COG: L131803 COG1846 # Protein_GI_number: 15672890 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Lactococcus lactis # 46 154 19 129 154 68 36.0 5e-12 MNCLRCEIFLGCLRRSAVWRMGMDGALMGFEQEAVSELYASVWGNRSTMQREFTRGAHGE QFVLRELSMKGTQTPSQLASALQASSGRISTVLSSLEKKGWVTRDIDSKDRRIIRVNLTD SGREQSHRMIEEMRSAICWIFSQMGERRTREFVDLVSEFTTYMSICHPGRPRPTAEQVRE AFVERDKRVAEHMAAKRAEN >gi|316915861|gb|ADCN01000023.1| GENE 32 42092 - 43963 3002 623 aa, chain + ## HITS:1 COG:CAC3282 KEGG:ns NR:ns ## COG: CAC3282 COG1132 # Protein_GI_number: 15896527 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Clostridium acetobutylicum # 1 621 1 583 584 496 43.0 1e-140 MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGK MLLISLGSVACAIITGYIAARVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTN DVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLATGIAVAVLLVSITVMMAMVM PKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVF VLWPRADVSAQRIMEVLDTEPIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLE GINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQVLVDGVDVRDYDLKALRDKIG YVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIF DDSFSALDFKTDREVRDALAREAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKE LLDNCDVYRQIAESQLSQSELTA >gi|316915861|gb|ADCN01000023.1| GENE 33 43989 - 45827 209 612 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 337 596 84 354 398 85 26 1e-15 MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIIGPDKLKDM TNEIVKGLPAIVNGRPVMNSVDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQ RLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSLGSLITSVTLFVGALV MMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVAGAALALDGQ IEFGVIVAFMMYVRLFTQPLSQFAQAFQNLQRCAAAAERVFGFLEESEMEDESGKQALLG KNYMGGHEVKGDVEFSHVQFGYEPGKSIINDFSASVSAGQKVAIVGPTGAGKTTMVNLLM RFYEISGGLISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVD TRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFY ADLYNSQFALAD >gi|316915861|gb|ADCN01000023.1| GENE 34 45978 - 47024 281 348 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1949 NR:ns ## KEGG: BLJ_1949 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 348 73 420 420 620 94.0 1e-176 MTGLAERLPHVAAFPEALGTGLLLHTDVALDDGLSNCIDMFISTYEAALSRFKDDSTVGR MRTATHGGTFDFPDWALDLFGLYDQLFASTNGTIDPCVGEDLIRLGYDESYSFAATPDAA EYAGAIHGRAVWSADVERHGTTLITHSPVALDFGACGKGYLVDLLAGMLGDGAGHPQPIQ YVIDAGGDLLVHTDEPITIALEDPADPANAVGAVEISQGAFCASSPSRRHWPDAAGHQLH HLLNAIDGLPVDDVAATWVAVTPPSSTITTKTSTHGSNASTTANRDTDDSSNTVAAHVPV TLADGLATALFTTSAAQLRAHFDFECAILNANRAVAQSPNFPGGFFTH >gi|316915861|gb|ADCN01000023.1| GENE 35 47178 - 48596 2012 472 aa, chain + ## HITS:1 COG:FN0222 KEGG:ns NR:ns ## COG: FN0222 COG2211 # Protein_GI_number: 19703567 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Fusobacterium nucleatum # 39 433 18 396 448 124 25.0 3e-28 MGNTTTASVTGVQVAPAKSAIRDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQET ISQGQTVFVPQGLVVLGIVTVVGGITAFARFFDAFVDPAVASLSDRCDSKSGRRMPFLKF AALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKKQ LTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFVCMLVPPLAI REKDYVNSQPTSESAIESLKQTFGDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLP ETTTTIYFVLMTGVSVLFYLPVNILANKVGKKRLLLVAFVIFTCAFAFAGALGSAALGFI PAMAQGLVLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQS VAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLGVLET >gi|316915861|gb|ADCN01000023.1| GENE 36 49177 - 50187 1194 336 aa, chain + ## HITS:1 COG:ML0193 KEGG:ns NR:ns ## COG: ML0193 COG0313 # Protein_GI_number: 15827002 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Mycobacterium leprae # 47 335 4 276 281 211 43.0 2e-54 MTSADELNEQYDADGSVTQVPERNDEVHAGESAVAQSRESAVTIPAGTVVLAATPIGNVG DASARLVALLERADIVAAEDTRRLYDLARRLGVYVNGRVIAYHDHNERDKADGLLDQVET GATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEG FLPRKHSERVQYLRTLLPERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYE QIRRGPIDEIRQSVIDDPPRGEMVLVIGGASNEEAEAAAPSTLSVDDMAVLSIDRALEDG LRIKDAIAQVVQEHPLADGSLANRKQVYAAVLKIKG >gi|316915861|gb|ADCN01000023.1| GENE 37 50214 - 50441 103 75 aa, chain - ## HITS:1 COG:no KEGG:Blon_2429 NR:ns ## KEGG: Blon_2429 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 75 51 125 125 139 100.0 4e-32 MTAPPEPPIRLTPAVACSPDTDVAVLWHIAYHVPELRKWLVANPKADAPLLELVSQRGGP GVRQALEILFESMEA >gi|316915861|gb|ADCN01000023.1| GENE 38 50356 - 50535 87 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCQSTATSVSGEHATAGVSLMGGSGGAVISEIARDADSDECAAAAWRGNRCACRKCRKR >gi|316915861|gb|ADCN01000023.1| GENE 39 50582 - 51229 256 215 aa, chain - ## HITS:1 COG:no KEGG:Blon_2428 NR:ns ## KEGG: Blon_2428 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 215 1 215 215 422 98.0 1e-117 MDITAGPMTDITTVASPATAQPAVPPILFTKDLPGPLSLNRLAAFGTLRKLDDSAGYWIE HSGTLYGRAKIVAEVAPFGTVVCSMTAAWVWLGGPDFPSTIDVISTSHFRSASVSRRIRV FKRLTLPEQIIKLGGLPVTTPARTACDLVMSPEDIPDPSTVNALVCQLMSAYQFRPNDCL QIVKEHRHHKYAGRARMFFESVQQEMDEPALEQCA >gi|316915861|gb|ADCN01000023.1| GENE 40 51546 - 53411 2845 621 aa, chain + ## HITS:1 COG:Cgl0868 KEGG:ns NR:ns ## COG: Cgl0868 COG0143 # Protein_GI_number: 19552118 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 3 590 4 600 610 739 61.0 0 MSHVLVNVAWPYANGPRHIGHVAGFGVPSDVYARYERMKGNDVLMVSGTDEHGTPILVEA EKEGLTAQELANRYNRVIAKDLCDLGLSYDLFTRTTTGNHEHVVQEMFKQCLENGYIYKG TQQVAISPSTGRTLPDRYIEGECPICHAEGARGDQCDACGNELDPDELINPVSKINGETP RFEQTEHYFLDLPALAEANKAWLETRKGWRTNVINFSLGLFKEVKPRAITRDIDWGIPVP VKGWIDNPNKKLYVWFDAVIGYLSASIEWARRQGDPEKWREWWNDPSCPAYYFMGKDNIT FHSQIWPSEMLAYNGKGSKGGETGPMGPLNLPEQVVASEFMTMEGKKFSSSRGIVIYVKD ILARYPVDAVRYYISVAGPESSDSDFTWAEFVRHNNEELASSWGNLVNRVANLINKNFGE IPPLDEDSMTNEDRGLLEEASAAFDVVGSSIETHHQKHALSEAMRVVGDINKYISATEPW KIKDDQARLGTVLHVAAQAVSDANHLLAPFLPHSAQKVWEALGGTGTFSPLPELKEVEDL DKPGFTYPIITGDYELGVNVHPWKSEAIEVGAVVPKPAPIFAKIPTEAVEEELARFDEAL AARRAAEAERLAAEKAKLAAE >gi|316915861|gb|ADCN01000023.1| GENE 41 53745 - 54341 -165 198 aa, chain - ## HITS:1 COG:no KEGG:BL0171 NR:ns ## KEGG: BL0171 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 198 14 211 211 371 95.0 1e-102 MLRPANPHIICVAYCHIMRFAIYVTVSDVLVTTSIDLCVYRARFRCPGSPFRLFLSNRDR NTLEKSPIRPYRAISAITHRRNSGLLDLHTLSARGMVCPGSQKEAKITNRDNEIWPGSHV NRLPSPPGHRLRIDKMLQCLTGMRPYRDSNVSLEVEESSSTPPNRKHGGILQCSESPRPV LGVADHGFERRGCSWTAA >gi|316915861|gb|ADCN01000023.1| GENE 42 54450 - 55370 452 306 aa, chain - ## HITS:1 COG:no KEGG:BL0172 NR:ns ## KEGG: BL0172 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 306 53 358 358 583 99.0 1e-165 MSETLTQRKREMLKRCTDAAQQLGKPVLFGMTTSLILQSVPLPKDCDLNATELHTVSDSH RTRIRAVVPPTTPHIWKPLSTAHNARINKHVHALDLVHTWAQLAAHMSLESLVILGDATL TAIARKPSLSGGRTADEIYQDFVRQVSELPKFNAKATCMIALEFIAPRVDSPMESETRIT TTQYGLPRAVTNYTVPGATFSNGAPITLDLAWPEFRVAIEYDGDHHRTDKAQWRRDNDKR ELLRHHHWIVLIATAANMADEPSQAELAYRAGRQLALRGTIFDFTLTATPLNELARRKRR KSTGAH >gi|316915861|gb|ADCN01000023.1| GENE 43 55704 - 57230 2267 508 aa, chain - ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 13 503 6 438 450 322 35.0 2e-87 MTANASARAIKPELLRTYTEDFNKDRANLIAADAAVSAGVLKAATDYRGVRALPRDFSIE LKQGSITNQERSGRCWMFASLNTLRYELMHRWNLEDFEFSETYLFFWDAMEKSNTYLENV LRTLDEATDSRLFEAINESPADDGGWWQMFAALVNKYGLVPKSAYPESENSRNSDDFKQY LNSKLREFAAELRRRSAAGASEDELRALKDEYMGTVYRICAVALGEPPEKFDFFVRPKDD DEDKKGEACKCKAEADADGKAESCKCGESCKCEGKSDAKACKCDKDKSDKPKTGKDERPQ IREIGITPLEFYKKYVPVDVNDFVTLANAPLKNRPFNQRYRIRFSANVAEAGDMEFVNVP LDVFKKAALDQLTAGHPIWFACDCTQFALRKDGFFDQSVVRVDQLFGTEFTGDKAHGLEY GDSPSNHAMTFTGVNLGEDGKPNRWKVENSWGKDAGKDGYYVMSDVWFDRYVTELIIRKE YLDDATRALLTTEPVELDPWQPLTRRCR >gi|316915861|gb|ADCN01000023.1| GENE 44 57455 - 59683 2847 742 aa, chain + ## HITS:1 COG:STM3679 KEGG:ns NR:ns ## COG: STM3679 COG3533 # Protein_GI_number: 16766964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 11 740 8 648 651 583 42.0 1e-166 MTSLHSKPLALKNVTVTDSFWRTEQELVRTAVIPYQWNALNDNVPGAAPSYCMHNFKAAA AQNKRKDTQGNAFVPPKYTFRGFEALPEDPANPDPDKFYGFVFQDTDFSKWVEAVGYSLA HHPDPALEQTADQAIDVVCAAQLDNGYLDTCYILNDMDRAFTNLRDHHELYCLGHLVEGA VAYYQGTGKDKLLKAACRFADYVDERFGRKPGQLRGYPGHEIAEMALVRLYEVTGEQRYL DLAEYFVTERGRQPYIFDIQADENAKRDADANYKPNTDPNRYAYHQANKPVTEQDEAVGH AVRAGYFYSGLADVARLADDQDLADAAERLWRNIVDKKLYVTGGIGGTVDGEAFSYNYDL PNDSAYSETCAAISLAFFARRMLELAPKAEYADVMESALYNTTLAGMALDGKSFFYVNPL EVNPYACHKDSRLRHVKPVRQKWFGCACCPPNIARIVESVQEYAYTVAEDGGTLFTHLYM GGVAKAELNGTAVELDVTANLPWQGDGKAVVRLGGDAAGTSAQAPARFTLAFRLPGWVGD ESAAAAAITATGESESGADSSRVTREIRDGYLYLTGEWRDGDTVTFDFPMPVRMLAANPL VREDAGKVAFVRGPITFCAEEKDNGANLHLLHADVEALLADPSAAKVEEFDFHAGAKGID DKGQGEVEDVTRRMVKLEVPAWREPLPAAVAAAGEGAAEVPAFAPLYAVYAPVKREPATA TLIPYFAWANRGENEMTVWLRG >gi|316915861|gb|ADCN01000023.1| GENE 45 59825 - 60676 872 283 aa, chain + ## HITS:1 COG:BH2728 KEGG:ns NR:ns ## COG: BH2728 COG4753 # Protein_GI_number: 15615291 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Bacillus halodurans # 169 272 399 499 510 80 37.0 4e-15 MFVRRGVLPMRVGEQTLHIEAGQIALLPPNVEHAGADIITSDVDFYWMHFKLPDARMLPD DAGLPQDDHCLLLPDERTLPDPDRLAVMCGQLIDIYARFGPYSNAYCDYFATGLLLEVSA QERLKADFAAHRTLAGYRGDGKPITSADRVRQQQEWAMHVDSAGAAGDSSGLAPMLAIRS WIMANAFDDITVAKVAARFHYSPSYLTAMYRRVFGVGVAEQIIEYRIDRARELLSSTASS VADIAREVGYADPKYFMRVFKRRTGLTPGQYRDAFPARLYNTV >gi|316915861|gb|ADCN01000023.1| GENE 46 60848 - 62005 953 385 aa, chain - ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 7 342 7 307 333 130 28.0 5e-30 MPSGKPTLRDVAKAAGFSPMTASNALHGKPGVKDSTRAKVLAVAEKLDYRINLTASMLKS GRSNIIHIIVNEFDSPFYSKLVESLVTETTARGLTPFVEQTRYSPDAAKHALANNPFSGQ LFDGEIIHASGLNAGVPLSAINHGRPLVLIDACEETPTFDTVNFPNEDGARAAVQHLIEC GCHRIAIVGDGYSPRTELAHVESSSGLRLRGASGALLDAGLPYDESTNFIGYGSDSGIEA GHAIAEAMLEARAQSADDTAESRSPGTTRATGSTPAIDGIFCINDYAAFGVIRGLADYGI RVPDDVRVIGFDGATAGSYTTPTLSTVQVDLDQLAQFALDMITRRVEQRDQGDGRSDESA GMPATRATIGYTLVPRESTVGSANR >gi|316915861|gb|ADCN01000023.1| GENE 47 62256 - 63788 1659 510 aa, chain + ## HITS:1 COG:no KEGG:BLD_1538 NR:ns ## KEGG: BLD_1538 # Name: galA3 # Def: alpha-galactosidase # Organism: B.longum_DJO10A # Pathway: not_defined # 42 510 1 469 469 921 100.0 0 MGLSGGVASLFTYPYVRDADWFAAGVPPYGNLYEYQRKQDTMTDLPQSLPQAWRPPMGWN SWDSYGTTLTEDELLANARFMAEHLKNAGWDTLVIDIDWYDPTARAHGYNDNAPLILDEY GRQLPDPVRFPSAAGGKGFGPLAAAVHELGLKLGMHMMRGIPRIAVDKNLPVYGTNYTAK DVADLDHVCKWNPDNYGLNQSHPGAQAWYDAQLDLFASWGLDFLKVDDMQTPFHSDEIAA YHRAIAKAEAKYGRSIDLSLSPGGWVATSYVDFLRENAQMWRISDDLWDRWEDIYQQFAR LARWAPFQTTGHWADADMVPFGHIGLRAERGDDRQSRLTLDEQKTLLALWCMGRSPLMVG GDLPTSNSDAIALLQNPALREVLAGSTNNRETVRERIFGKWWDESTYRGEFIVWSADAAD WADGTRSAHHGGHYAALFWTGSDTYEIGRNIQLQSIVGLDARNDDWTLADLYADAPGEPA DVRLEGVGADRVITGTIPPHGVLWVALDRR >gi|316915861|gb|ADCN01000023.1| GENE 48 64540 - 66450 273 636 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 362 614 105 354 398 109 31 5e-23 MYVDPGINTSASNLKWVLPYCKPDLPRVVGALLLFIANNTMALTIPILSGIIVDRVIVGG HADELPRLCGLMILMTIIRVGARYGYQMWMERFGQNSVYRLVSDEYEKLHELDFTYFNHT RTGDIMSRLTSDTDAIRHCLSWVSYQIADCVVMFVGALCVMFAIDWRLALVLACVTPFIF VLTRGLSTHAHPLFFAIRNSLASLNSMVEENIEGNRVVKAFVREPYETEKFDEHNDDYMQ CNMALAYNSRKYMPWLDGLGFSLQLITLGLGGFLVIKGYMTLGNLVSFNSFLWMIDGPVR QSGWLINDWQRFNASCIKIRKLLTEQPRIVEKPDAVEAVKQAVTIVEQVKHDDEATGATG APVASGTSGAQQSTERKSCPLHIKGDIRFDHVSFAFPDDPETPILKDLDFTVPAGSKLGI LGETGAGKSTLVSLISRFYDPTVGHVLIDGIDARDWPLATLRSQVCIVAQDTFLFSDTIG GNIGFGASGDSDDRYIQKMAQIAGADNFIRSMPQGYDTVVGERGVGLSGGQKQRLSLARA LADNPSILIMDDTTSAVDMETEAEIQKHLKEMDGGKTIVAIAHRISSVKDSDLILVLEHG RIVERGTHAELVAAHGRYWDIYHKQLGLQSGVAQGF >gi|316915861|gb|ADCN01000023.1| GENE 49 66461 - 68269 188 602 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 373 576 24 224 305 77 29 4e-13 MAQRNTYREDEELEEQINFRDILRVGKYLKPYMAQVARILVVVISMSCIVVAVPYLTKIM IDEAIPNKDLGKLGILAVILAALIVLYEFGLRYRTVAITRVGQLMLKDMRRDIFTHIQTL PFSYFDSRPHGKILIRVVNYVNTLSDTLSSGLINVISDVFTFVITLIVMFVIDWQLALWS LILFPVLIIWVRVLQIFQRRAFQKLSNKQSNLNAYIHESIAGVKTTQTFAQEQAQFRTFQ EQQGEVRSAWMHAVHIQFLMWPGVQTISVMTISFIYFVGVMGFGGVNVTTGVLIAFVGYA NNFWNPVINIGNFYNQLITCSAYLERIFETLDVTPEIRNKPDAADLPQIRGRVDFNDVVF RYEKDGRNILNLVDFHVEPGRTIALVGPTGAGKTTIINLLSRFYDVSEGSVTIDGYDVRD VTLASLRRQMGVMLQDTFIFSGNVRENIRYGKLDATDEEIEAAAKAVHAHEFIMELPDGY DTVVEERGSTLSAGQRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLQHLLKGR TSFIIAHRLSTIENADEIFYIDHGQIVEHGSHAQLLAAKGAYYRLYESQYAMIRVASGAP EE >gi|316915861|gb|ADCN01000023.1| GENE 50 68298 - 68366 67 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALSVTINTVKYVTVRVKNMQS >gi|316915861|gb|ADCN01000023.1| GENE 51 68532 - 70997 2852 821 aa, chain + ## HITS:1 COG:CAC3436 KEGG:ns NR:ns ## COG: CAC3436 COG3534 # Protein_GI_number: 15896677 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Clostridium acetobutylicum # 21 578 54 570 835 327 34.0 7e-89 MADKLVATLDKAGVRKISTDLWGVFFEDISYSGDGGLNSELVQNGAFEYNRADKPEWSNY TAWRKIVPAGSFAAFGVGETAPVAEENPHYAIAEIGKVSGEQTADSAVSRADSALSQTDS ACTPAAPALENLGFDGMVFRAGETYDFSIWTRAHGKALPVQVALIGDDGKPLAATVVTAP ASNACGEWTQLRAELTITSAQAAPQPNAEIIATQGALRLIFPEPGTIDLDFVSLEPRTTY KDLKHFRPDLVEALADLHPRFMRFPGGCITHGLGLNNMYHWDRTIGPVEHRPHNFNVWGY HQSFRIGFYEYFRLCETIGAKPLPVLPAGMSCQNTSQGPVPVAQEDMPAYIDEVLGLIDF CNADSATNKWAAKRAAMGHIEPFNLEYLGIGNEDLIDDVFKNRFQQIFDAVKAAHPEITV VGTVGPAPSGQDYEQGWAYAREAGIPIVDEHSYQSSSWWFHNLDHYDHTDRKGPKVYLGE YGSWDTQLINGLSEAAFMGRMELNGDVVHMASYAPLFAKNGHTSWNPDLIYFDNENVYRP YSYWVQQMYATTTADTAWPVSLDGPTTLRRDLPNTVSLKIDGGAHADFADFSLETADGTH IDLPDVSYQGNGPVSLPVPEGLTADSYTIRAKVTYYEGMWGVRIASGDVNGKNYNGTSLG RGFSVQVVREGTGYALAGTETSMDAVRPGTTWDVRIEIGDRGEQMRLYIDGALVADGHET PDEPRRTVTVSRDSTAGVTYLRVVNALPESVDVDLAQVLAALNVPDSAKAVVEATVLTGN DPYAGIRGEESPTCPTSHEVNLADGTYTAPAWSFTTLAVRG >gi|316915861|gb|ADCN01000023.1| GENE 52 70981 - 71193 182 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227546925|ref|ZP_03976974.1| ## NR: gi|227546925|ref|ZP_03976974.1| hypothetical protein HMPREF0175_1349 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 70 1 70 70 115 98.0 1e-24 MPYEANPIIPLGDARNTCDGYAPESAVRTVAAIAPVAGAEWKRYYDDVTWDPDEAKRRTK DDPTKPEVEL >gi|316915861|gb|ADCN01000023.1| GENE 53 71362 - 73107 1473 581 aa, chain - ## HITS:1 COG:CAC0577 KEGG:ns NR:ns ## COG: CAC0577 COG3507 # Protein_GI_number: 15893866 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Clostridium acetobutylicum # 25 392 39 414 676 269 41.0 1e-71 MTATTSTTEPTTESPADERFVEHPLAPGRIAIHDPAIVEDNGTYYVFGTHRRCARSTDLV HWERFENNLTRDPASLLGGIWEAWPKQPENPALEGNTWAPDVIWNDVMRKWCMYLSVNGH EFRSVIVLLTADRLDGDWTYVGPVVYSGFNVDNVGRTDVPRVLGDEAAHGDLSRYASLKD TRINAIDAAPIRCDHGELWMSFGSWFGGIWMFKLDPKTGLRDYSVRYPLVHDSADPYYGV KVAGGYWNSGEGSYFVHRNGWWYLFMAYGWLGRTGGYQIRLFRSRNLVGPYVDQNGNPAI SNGEIPDNQTKDTGIRLTSSVKWSGGPADDDTVEVSQGHNSVLTRGSDGRLFLTYHTRFI DRGDEDYETHVRELLPTADGWLTAAPYEYRGSAAVPPTAANTSDPTVGDDDDGLGDYIVA SSSAPNLAARSCHCVRPVHESDLAHPSLVSGDYEFVRHDPHAYFNGTRNADGTWHGVNLP ETITLQPDGRVTSGGVVDFFDTPDANLPRSTDGPVSRGSWRMLGATPAGVHCCDSDMAIT IDGMTYTGVFAVLPRETDGRATLTFSAIGGNQAIWGARIEG >gi|316915861|gb|ADCN01000023.1| GENE 54 73264 - 74859 2301 531 aa, chain - ## HITS:1 COG:CAC0577 KEGG:ns NR:ns ## COG: CAC0577 COG3507 # Protein_GI_number: 15893866 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-xylosidase # Organism: Clostridium acetobutylicum # 55 523 43 512 676 342 41.0 9e-94 MTLTGTLRKAFATTLAAAMLIGTLAGCSSNANSNASSNAKNSSDSSQTSTTEIKRGESHD PSIVKANGKYYIFGSHLAWLKSDDLVNWTSFKNNLSTDYEKIFADIWTNWSKQSANPDVK GNMWAPDVIWNATMKKWCMYMSINGANYRSAIVLLTADDIEGDWTYVGPVTYSGFEKVNA SKTDVWKVLGEGADLTRYTSQTDTGINAIDPCVKQDDNGDLWMTFGSWFGGMWMFKLDPK TGLRDYSTTYQTVKNQSDAYYGIKLGGGFGNSGEGSYLLHTNGHWYLFASYGNLQQTGGY QVRMFRADKITGPYIDENGNAAVSERAIGNNWQSEVGVRLMSSIQWSGNDNSHIEVAQGH NSAFVDDDGTTYIVYHSRFSDTGEMHQVRVRELLPTDDGWLVAAPYEYTGTKAADTKYDA KNVAGDYEFVIHDQRTSFKGPKKVTDKHSTDYRGVNKPVNITLTEDGKVTGDKTGTWKLD KSDGTGDMTITLDGVEYHGAFDRLPRDKDDRKVEMTFSVIGDNLCAWASQK >gi|316915861|gb|ADCN01000023.1| GENE 55 74975 - 77107 2175 710 aa, chain + ## HITS:1 COG:CAC1529 KEGG:ns NR:ns ## COG: CAC1529 COG3940 # Protein_GI_number: 15894807 # Func_class: R General function prediction only # Function: Predicted beta-xylosidase # Organism: Clostridium acetobutylicum # 348 686 9 309 327 92 25.0 3e-18 MSDSYSLLCYTRVPTSREEANNEDIAFSMHLALRSHLDGSWTPLNENYGIFFAAGVPIAA ATPESRRACTAAARFKTDPYTTVRAASDAVAHGAAMPGVDIELKSLKDPHLFRLASGRFA VAATRTARGGGADGSERSAFLLATSRDLTSYDQRGLVLLGPTSGVHRPTVIYNDAERRYV IRWHDDDGHAMRAVCADIIAAVGTTLPAEPDDTSEPIAASNANDVNATSVRRDYGIADAV PGNEIDITEQEATTLIARFGRVYNTGVTVPSMTVSADLYDGEARDLIGSLGRTTAKLQYS DGSTAMRAVDWDAAQLAALADDAAAGRLKPGERRTVRGRIRQTDYPVPFAVERADPSVFA WNYNGEQLFMFIATDDTDGNCVDPNGGRTHMPLRVATSIADLSDAAGGRDREIDLLTRGD RNSEGRAMTGCFWAPELHVIGGKLSVLFMPCFDGPAADPDGTANDRAGKPDMWTGRCHIM QLRQDADGRDLDPRDPANWTVPEPILGPGERILNPVQRISLDMTVIVDSGRWYYAWQQVG SVWIAPFDPDRPTRLTGEPTQIVVPEFAWDNMIAEGPNAFVHEGKIFLIYSGSLVGIDYT TGLVTAPAGVRADLTDPATWTKLDYPLQKSGMYNGEWQLGTGHGMWSHDEGGNLIYVFHN AEYDNGRYGGRDAQVRRVHWSGEGMPILDMQRDEELNPAYAGITMEIAVR >gi|316915861|gb|ADCN01000023.1| GENE 56 77223 - 78281 1284 352 aa, chain + ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 14 302 6 292 333 157 33.0 3e-38 MVKKTTAKDGDHVVTMREVAKAAGVSIKTVSNVVNDYEFVSDATRAKVHKAIDELGYVIN VSARNLRRGSTGIIALAIPDLQLSYFAQLSSLIITEAKKLGLRVIVEPTLYSREGELDAL HGSQTAMVDGLIYSPLELGPDDAAEVEVDYPLVLIGERIFTDKVDHIATENVEGAKRATS YLLQTGCKRVAVVGVHPGEEVGSAALRFRGYREALEEAGVPFDPALVVPSIMWHRNDGVA AMNTLLDSGVRPDGVVALNDMLASGVMHSIQMHDLRIPEDISVIGFDNSDDSQYLSPALT SIAPGLEAVARLSVRALKNRIDGQPPLEGDSTDPIFRKVSSTLVVRSSTRTL >gi|316915861|gb|ADCN01000023.1| GENE 57 78393 - 79337 787 314 aa, chain - ## HITS:1 COG:YPO2336 KEGG:ns NR:ns ## COG: YPO2336 COG0657 # Protein_GI_number: 16122560 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Yersinia pestis # 38 296 61 314 334 90 29.0 5e-18 MDIKPWEYADFPAFNEPVPGATRVPTTGDEIGVTYHPDVPYATAGTTTLHLQILVPQTRN QPDATTYPCMVHVQGSAWMKQDRTALVPTLSRIAERGFVVAIVEYRHSGIASFPAQIQDA RNAVRFMRANAAQYHVDADNLFLSGCSSGGQVALLAAVAHAADRTDMDDTSLSLAPNAAD VSDATRGVIDYFGAVNGQMDNGFPSTVDHHLATSPEGMMMGHVDLRDRPDLRAAMTVESY LTPELALPPVLIFHGTKDRLVNARQSASLYRRLRDVGKSAELYLLEGADHGGAEFWTDGM CRVATDFMRSNCAR >gi|316915861|gb|ADCN01000023.1| GENE 58 79602 - 80636 803 344 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase [Saccharophagus degradans 2-40] # 6 311 5 310 314 313 50 2e-84 MTVYNNPIVLQRADPWVLKVDGEYWFTASDPEYDKIAIRHASTINDLQKAPETVVWRKHE SGVCSKYIWAPELHRVNGAWYIYFAGAEHEFEPNGMPTHRMFVLENTDADPTTDNWVEKG QIVTPMDSFSLDATTEVIDGVQYLVWAQKDYDIPGNSNLYIAPMANPWTLAADPVMLTKP EYDWECIDFLVNEGPAFLFHDDKIFITYSASGTGVPYAVGLLTADRGSDLMDPKSWTKSP VPVFKTCSENGQYGPGHNSFTKSEDDSEDLMIYHARNYTEIKGDPLFDPNRHARVGVVRW NEDGTPGFGVPEPDNLWTPVTTDVLPPDGGPKAGTPAVGLAAEA >gi|316915861|gb|ADCN01000023.1| GENE 59 81060 - 82376 2268 438 aa, chain + ## HITS:1 COG:lin0762 KEGG:ns NR:ns ## COG: lin0762 COG1653 # Protein_GI_number: 16799836 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Listeria innocua # 3 369 1 347 417 104 28.0 4e-22 MKIKKNLVAATAAVLAAGMALAGCGSSNGGSGDVQKTADGKVKITMWHGFSEADGKTLES IVDDFNKSQDKYEIDAQLQPWSTIGETMVTKVTTGDGPDFVTTGADNGQGWSIDGTFQCV SDFYADKNNGTGDYLDNVVKQITFNIDGEEEKCAVPMGYAPTSVWYNTDMWKAAGLTDKD IPTTWDQLLEVAKKLTKSDGSQYGLAMADSGWAAYMKGNGTGLYTTDGKVSINSKENKAF LQKMRDFYNGGYAVPGLDDTAARESFESGQSAMVIVGPWEDQAATDKGINHDTFAVPDGD GTYKYADGKTGSNTGSTGLYWWVTSQVGDSEKLPGIYEFFKFYNNHDNQVKWSLGSAYPP NNKTVTADELSDRPLIAKISQYTDNSYIGIAGLKGGFGDIAASLDTLTQNTVRTGDDIQG LLDQAESSISGYLDEYAE >gi|316915861|gb|ADCN01000023.1| GENE 60 82515 - 83468 1565 317 aa, chain + ## HITS:1 COG:lin0760 KEGG:ns NR:ns ## COG: lin0760 COG1175 # Protein_GI_number: 16799834 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Listeria innocua # 13 310 1 292 296 194 39.0 3e-49 MTTATSQGEAHEVAKENKKAIQARNLRTGVLFTAPALIVLAIFVFYPAIQTFITSLTNGR INSNARRPAKFIGFQNYITLFQSQDFWTDVKNTLVYAVLYAPIVVIIALAFALLLNRKDL KFVGFFRTCMFLPFVISLTVAAIAWQFILSPSLGLIPYWVSLLGGPSHLDLLGTRETSMA TIVFITVWKNFGYFMVIFLAGLQGISAELYEAASLDGASAWQKFRYITLPALRPTFNYVV IFGLIGSFQVFDQVFILTSGGPARSTETIVYRIYTEAFGNGKLGYASALSYVLLIMTLIV GLIQLYTNNKHEKEEIA >gi|316915861|gb|ADCN01000023.1| GENE 61 83465 - 84391 1459 308 aa, chain + ## HITS:1 COG:lin0219 KEGG:ns NR:ns ## COG: lin0219 COG0395 # Protein_GI_number: 16799296 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Listeria innocua # 43 308 18 281 282 205 42.0 9e-53 MSTATATSMKLTAEQESENARINAENERLRKQARAKRTISLTLSYVALALVTFLMIFPLI IVVIVSFTPNAVTQTWPPKIIPSAWTLDNYTSLFQRLPIGRELLNTIVFAGAVTIISVFF DSLAAYGLSRVDFKGRGILLAVLIATMMIPAMALLIPVYKLLGSMGLVNSYLGIIIPRMA DVGGIFLLRQFFISIPKDLDNAARIDGAGEFRIFAQIILPNAVPAILTVGMFNFMGNWND LLWPLIMTSKPETRTITAGLAMLTGHGSSVTPYGVVMAGALISALPLLIVFFFVQKRFVE GIAMTGMK >gi|316915861|gb|ADCN01000023.1| GENE 62 84734 - 85066 217 110 aa, chain + ## HITS:1 COG:no KEGG:BL0191 NR:ns ## KEGG: BL0191 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 110 1 110 110 190 96.0 2e-47 MVQVSMDIFGQTFVFFVVYDWNHTAASASLLLDCAAISLPLMPLFGIGMTKLGPRWNGDA FPGLCRRLGLCGWIRNTFPGMLRTRMRLAAFHVAGAAASTDFDDRTGVQQ >gi|316915861|gb|ADCN01000023.1| GENE 63 84995 - 86065 753 356 aa, chain - ## HITS:1 COG:ECs4465 KEGG:ns NR:ns ## COG: ECs4465 COG3177 # Protein_GI_number: 15833719 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 44 280 115 343 431 90 28.0 3e-18 MRSFDYIESGKTLLTPHTTSLLAAIHEAKGRQSIQTTIRPDILGTLVAVARIQSTDASNR IEGISTSDSRLNDLVSEKVTPRNRNEEEIAGYRDALSVIHESHDYIPITPNVILQLHRDL FRHTPLTFAGHFKDSDNVIIERDAHGTSTVRFAPPSALVTPELIERACSAYTQAIRDGHT DPLLAIAMFILDFTCIHPFNDGNGRMSRLLTLLMLCRNGYMVGKYISIEHLIEQSKSTYY EALAASTQGWDDNANDYAPFTNYLLGIILSACKEFDERINLTAGGRAQGAPRVATKGTRI EALLDQSLVPLSKADILARMPDTSTTTIERTLKSLLDSGTIIKIGAGRSTRYVKRR >gi|316915861|gb|ADCN01000023.1| GENE 64 86138 - 86311 56 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMQKKAAGWRPSRLPVALLSRECCARGKKRQVQAGVTDDTRRVVERLTGLPYERCWR >gi|316915861|gb|ADCN01000023.1| GENE 65 86362 - 87321 864 319 aa, chain + ## HITS:1 COG:Rv1008 KEGG:ns NR:ns ## COG: Rv1008 COG0084 # Protein_GI_number: 15608148 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Mycobacterium tuberculosis H37Rv # 97 319 57 259 264 151 40.0 2e-36 MSKHHHRDRSWAPAPEALPDDAQTIDNHTHVASVIPFARAMSHEAQEKGQPEVPVYDVDQ LLAQAQSVGIGGIIDCGCELPHLMTAVQMALDHPGNVHAALAIHPNESVLHGHRGVPGPD GLPLKYKPYHDTSFEDALAEVHRLATTYPEQVVAIGETGMDLFRTGEGAKELQREAFRAH IALAKELGLPMQIHDRDSHREVIETLLADGAPERTVFHSYSGDREMAEIAREHGWYLSFS GTVSYKGNDGIRESLRIVGLDHAMVETDAPYLTPMPYRGRTNAPYMIPYTLRAMADTLDL PIADVARGTRDTARAVYGL >gi|316915861|gb|ADCN01000023.1| GENE 66 87464 - 89977 2955 837 aa, chain + ## HITS:1 COG:SPy1414 KEGG:ns NR:ns ## COG: SPy1414 COG3158 # Protein_GI_number: 15675333 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Streptococcus pyogenes M1 GAS # 96 740 10 648 666 590 44.0 1e-168 MAESNQRTARAQKASKAQKAQSGAAKAKARQEEEALLRADTFTNAPKVSRRTLTKEEREA LAKQREAETKEAEKIASAWSKGGLGRWWARLQSSPDKVTWGMAIVALGVVYGDIGTSPLY TAQTFLAGQGGLGSVDREAVLGMLSLVFWSITLITTVKYVLIAMRIDNNGEGGIFALYSL IRKYGAWLAIPAMLGGAAFLADSVLTPAVSISSAVEGLQTLPPLEGLFDENPSLTLMITV VIIVILFSVQSRGTESIGKVFGSMVLVWFGFLAIVGVTNLSNDWSVFEALNPVYGIKFLF SPNNAAGIALMGTVFLSTTGAEALYSDMGHVGRGNIYFTWPFIKVALVLNYFGQGAWMLA NSDNPQYTAMESLNPFFQMMSPNVRYLAVILSVSAGVIASQALITGAFTMVSEATRLNWM PHLQVRYPARTRGQLYIPVVNGVLCVSTLAVLAIFKDSEHISAAYGLALTITMITTTVLL GVYLWHSGKRVGAIVFTVLFLAIQAMFFIASMAKFLHGGWFTMLLTAAILFVMYTWNEGT KLERAQRRHMRPNDFLPALDKLHSDFRIPYFADNIVYLTSDSETKRLDTDIFFSIFADHP KRARAWWAVSVETTDEPFTREYSVEDFGTNYIYRVRFRLGFKVSQSIPAYIHQIMHDLSK TGELPKQKSIYPKVDADPDIGTIRYVLIHKALMPESKVSARGALSLQAKYAIRHMAGSPV KWFGLAPYNPLVEVQPLFVSTRRPPRLKRTDTAKTIPTPTPTRAVADPAAVPDPMDTTSG LGRLVQELDAAVSAEARKTAEAAAADAPAEQGDKGDKGKAENGKPAAKPQRSAKQKR >gi|316915861|gb|ADCN01000023.1| GENE 67 90071 - 90931 1138 286 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1898 NR:ns ## KEGG: BLJ_1898 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 286 1 286 286 573 99.0 1e-162 MCRLLGYATAGFNLSLNAVLGQDNVEDFRELSEIHNDGWGVAQLSDPAEAPHVRDGGAPT PETGTRIYKSTIAARHDSTFEALADEPSRGAIWHLRLASSNLPLIMENQHPFYANGLSFI HNGDISDANGRNIVTNRSYPVNHSVFLSTGGRSDSAIFFAVILEYIGFGFSLDEAVAQAV RELRQAYPKSSYNCMIQSEDQLIALCAAGREKTSPRIVEIYDEYGRGEQAADYRVMRYRE LRDDNGDSAGVVVSSSGYKQEGWNVLENDQMIIASNRNGTYRLRSI >gi|316915861|gb|ADCN01000023.1| GENE 68 91007 - 91711 809 234 aa, chain - ## HITS:1 COG:MJ0778 KEGG:ns NR:ns ## COG: MJ0778 COG1418 # Protein_GI_number: 15668959 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Methanococcus jannaschii # 78 185 43 134 169 71 39.0 1e-12 MTGYIPTLEQIDELHRKIAPSKAAYELVHTHCVIVATIGCQIVRRQNALFTRRCTLPKDA EVPPTAGVTGGHVPPRLLDEHLVLIGGLLHDIGTYRVFKHDGSDGEPLKFSKKRYILHGL KGYEYLLDEGVDESIAQFCRNHTGVGLTREDVVRQELPLPPADYVPMNLEQEVVMYADKF HSKSVPPKFLQVEAYTARAERFGGENKQRWLDLVAKYGVPDIPALAEKYGMRMI >gi|316915861|gb|ADCN01000023.1| GENE 69 91835 - 92956 1348 373 aa, chain - ## HITS:1 COG:BS_yclH KEGG:ns NR:ns ## COG: BS_yclH COG1136 # Protein_GI_number: 16077441 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Bacillus subtilis # 197 368 39 207 226 74 29.0 4e-13 MSDKNNDQELEKTTDATADEVTSETETNDAIESVPADSVQFSVTFDDVDDESTVDDGIYS ALASAETGETDETSEAEADAIASVNASAEVTERNAARVNETLRLATTDHKDALAEHAEPQ GKAAEPTMTLASRIDRVLVGGGSDDILLKTYPTFALNKVTVAGPKGKVNILDGANFFCYS GHAYALLISDDPDSGITADAKRRALMGVMSGLATPVSGTVMNKSANIVELEPVELRGHRL GIVPQLHAVQPKLDAEQNVLYAMDASNRNFLKPKPVIARELLAKVGFSEATSGVAVGTLP LVQQRLVAIARAISTEAEVLILDEPTRGLNADDEVTVFAALAKLAHTGDPKHCVIVLTAS REIAEAADTLFEI >gi|316915861|gb|ADCN01000023.1| GENE 70 92953 - 94443 1763 496 aa, chain - ## HITS:1 COG:BS_yclI KEGG:ns NR:ns ## COG: BS_yclI COG0577 # Protein_GI_number: 16077442 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Bacillus subtilis # 153 407 169 407 486 74 25.0 4e-13 MFVLSNAWRALTRSKGRTALTAFITLAVTFGTVAGLAIIQEDTNAHTTAYDQQKATLAIR PTAATWKKVSATDSASTKHYMTWTSYTEYATLVRSATNSLNFTVTETVPARVSGDLKALD GGSLGSASDDETGGQLIWRAFWTKDSAKASDLGTFEIVDGKDLSYNNQSSNPNTTGALVS EAFASANNLKVGDTLEVAAASDAKTTAKLKVRGIYKYTSESAVANPVTAARNRENAIFTN YQTFAKAGLDPQSTDKTVSGWAVPDLDVVFDAGDSATYKSLVSTLKKSKLPAKGYEFSSP SLESYNASLEPLDTLSSRAKTGTIVLVAVGGVLLLILVLSGVWASKRDDEIGMALVSGVT RGRLGWQFMLEVFIVTLPFYVIGLVGGAFAANPIGSALASGHATPVTSGLIWTMVWYGLG SILILAILAALRLAFFSANKLFAADGDWGTVSETEEIETAEATGAAETDEAAEATAHDAG EANKTTTTTDDAEAQA >gi|316915861|gb|ADCN01000023.1| GENE 71 94785 - 97094 2112 769 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1894 NR:ns ## KEGG: BLJ_1894 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 769 1 747 747 1342 95.0 0 MRFTSGHSSHKAVGRRRSRHAGNGKSNRSASTNSAANQQTGPVNLKTPQHVGGNGRSLVS RTPIWARVVVVLLLTLLASVTCVGTLYAASVSRMAADAQRVLTSAESLANSALGCGSDKS LSDISQELVNATNDLNAELNGPQWDFFRDHSRFGSDITAAREMLASVDTLVNGPFTDLLN LSKRLQGFSLKNGSVDVSALMDMPDIVKQAHKDISQQLTKLNKVPTPSVAKVATVLETEK AALKTVDSMLGEYDGLINLLPQLLGEDGKRTYLVMVQNPAELRSAGGMVGTIAAITADKG TITIGDFATTSGWDIPEEPMDDTVLKERQVFGGTFDQYPATTTIDPEFQRVAQMNKYMWL YQKGNEDENVAGVLSLDPVFLQALLGATGEVKLSDGRVLDSTTTVPFFASDLYTDYPDFE QQNNFVSEAAQAIMNHVLGNANASTASPLLKAIRDTSASGHFKLWMADPDEQEALIATGL IDDKASGELSADSQVPEAGIYLSELQQGKQDWYLKTSTTVTKTCGDASASQNALYSGVLD KRITTAVRNTHLGQFTEDQLGDEYTVTFTMKNTLTKAKAESLPDFVNGGSENPVLGGMLY RVVLTAPYGGEITAVQADIDSWGTNTASLYDRQYIMFNQQWIEPGKELTIAYTVRVSSDA THPLNVVTTPVVNADGVETGSNGNVTDECPADTNGADGANGADGANDADGANDADGANGA DGANGGADGGKNDAHKDASSDPSAGLDALDKLKSQISCPVDLKSLAGSM >gi|316915861|gb|ADCN01000023.1| GENE 72 97094 - 98269 1000 391 aa, chain + ## HITS:1 COG:no KEGG:BL0200 NR:ns ## KEGG: BL0200 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 391 2 392 392 636 97.0 0 MTMPDSVSGVAGKLRDVNYDLLRVVAMCLVIGVHVINNYMPVKMTLAGSAEVTRSVLFAL FMVCNPLFIMVSGRFNLTFDAGRLGSTRSSGRLPGSGSDARAGGGAGQADPSSLAPYVRY YYKRFISLIVPYLLYAGGMGFVAYLVIDHRSVGGAVSGTLFDLFSGYDDSVYWFVFMLAG FVLATPFLAAMMRAIGRSGAWLLVGLAAAVAAAEHICDLVGYPLTFLQSFPWRGLLIYYL LGFVLEYYPPSARIRRGVYALAPFALAWTVATPYLFAGQQMQVGRTVTVAFAMVVMATFL FFRYDVHITSARVRKAIIWLAGYSYTIYLVHSPLSKVLIGPRMPTPTNGWSYAGISVLMF GATLLAALVFAVIADTVVLKPVQRLLRKVRL >gi|316915861|gb|ADCN01000023.1| GENE 73 98229 - 98780 246 183 aa, chain - ## HITS:1 COG:no KEGG:BLD_1561 NR:ns ## KEGG: BLD_1561 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 71 183 1 113 113 164 99.0 2e-39 MFQLAPGLFERVSEQGAEEFPELPGAVELALGVRVPQCREGFVLIAVTPAGHIPDVWAHT YRIDGIVNGDVLARPVDSTSILHSGSGNVGGCVSRDWIQFAISADSMAQALCLLFACLLF SCMADPRAGNGRLAALMTVGALMGMSKFTFTPLLLLGFLALIPWHSAVSESTAVPSAADA ARA >gi|316915861|gb|ADCN01000023.1| GENE 74 98625 - 99032 194 135 aa, chain + ## HITS:1 COG:MT3905 KEGG:ns NR:ns ## COG: MT3905 COG3464 # Protein_GI_number: 15843420 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 9 131 314 434 444 68 34.0 2e-12 MPGRRHRNQHETLAALRNTDPKGQLHRAWQLRELLRTLLRHPLEQARGELKHWVFWASHS RIPEITELARKIRRRRPDILRTIELGYSNARLEASDNRIKVTIRMAYGFHHVDNLTALIT LRCGGLDIRLPQPTI >gi|316915861|gb|ADCN01000023.1| GENE 75 99100 - 99360 195 86 aa, chain - ## HITS:1 COG:no KEGG:BLD_1563 NR:ns ## KEGG: BLD_1563 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 86 1 86 86 121 100.0 9e-27 MRLQEAKRQLKNHLLSEVADEVNARREEKQESEEQAVVIKGTDADQSGQTIKGLEKRIEG NRQLLEQTHSGVTMLNRYITSFLGAR >gi|316915861|gb|ADCN01000023.1| GENE 76 99386 - 99778 239 130 aa, chain + ## HITS:1 COG:no KEGG:BL0202 NR:ns ## KEGG: BL0202 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 130 1 130 130 264 100.0 9e-70 MDLRTIFKNRLGQNPALSIMGHGKNSFGSSSTCVSRISNPAYRLLASDLDWLVGAGVTIA AYNVDEPCTPLEICKKRNLFKLFYNDVSLLTESPLRKTQTALDVLGLRTPARRGRITYLP IYMAGPFLNE >gi|316915861|gb|ADCN01000023.1| GENE 77 100110 - 102515 1677 801 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 192 800 270 822 824 263 30.0 8e-70 MLADEIEDLDTTTPDSADTGIAETSADSLNSASEVSNDDIDNAQAESNAKDSDTEDTTAK DQRSKKTNSRKHKKPQKPNKIKASLARLNQFIKANAAPILTSKFAQLLISAAVALHKLWK KRPKCPYTLYVVVMALIDAAAVTFIQWGMYSEPKYDDPNAVDSTTKILNSVNGQLTRFVT QMWLEEDKLNWLLNFLALGMVYLVLVFVINRFWVATAVFAITMSVYAVANSIKIILRNEP ILPSDLSFLSSGNGGEITSFIPKSSQALVDGTITMLIWLTVICLILQFVDGRRCVIPFHW WRPFRNVKTIIGNVTRIIAAAMSITLLCSFTWTLSVPGAWGYEWAKSWGDSPQLWSAEGD AANNGPVINFLRLTHPKIMDKPEGYSQETMEELAKKYSSEANQINGTRANNLTDNTVIMI LSESFSDPTRVPGIALAEDPMPNIRALKETTTSGLMLSPGFGGGTANIEYQSLTGLDLAL FDDSMQSMYQELVPHQKNPFAWNQIWNAEYGKSGSVAFHSYYKNMYLRDANYKKFGFNKF YTLDSEPAITHQDRTDNSPYVNDAASYQNIIDQLNKEEHPQFLQLVTMQNHMTYDNWYFN NQFEQANVTENLNDYERGQINTYAKGVSITDQATIDFLNQLNAMDKPITVIFYGDHLPSS YQTAAADKNNTLALHQTDYFIWSNQASASAGVKLDASNTAYTSPNYFMEMAAEHMNAKVS PYLAFLTQTRTDIPALERLVIGAGGFDTDASTAYLDQNGNAIKRKALSKQAKNTLHDYKL IQYDMTAGKGYLNDTNFFTVK >gi|316915861|gb|ADCN01000023.1| GENE 78 102595 - 102795 182 66 aa, chain + ## HITS:1 COG:no KEGG:BL0217 NR:ns ## KEGG: BL0217 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 27 65 1 39 646 76 87.0 2e-13 MAQTAVDHKAQWETVNRVVYPVKDTDLTLPLYAVNWHPSHFDANVFDERDSMMSVNLNAV SRSDFQ >gi|316915861|gb|ADCN01000023.1| GENE 79 102807 - 103214 124 135 aa, chain + ## HITS:1 COG:no KEGG:BL0204 NR:ns ## KEGG: BL0204 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 8 135 1 128 128 182 100.0 3e-45 MEIGHWPMIRTASLSMHVPSSHWNRTRISRYAPTSMLSQRDIGGTGRALSNCVFLRRLRV RRENTAEPARKIRRRRPDIIRTIRLGSSNSRLEASDNRIKVTIRMAYGFHHVDNLIALVM LRCGGLDIRLPQPRT >gi|316915861|gb|ADCN01000023.1| GENE 80 103237 - 103455 98 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227546946|ref|ZP_03976995.1| ## NR: gi|227546946|ref|ZP_03976995.1| hypothetical protein HMPREF0175_1370 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 70 1 70 135 124 94.0 2e-27 MTPPLIFSWFDHTLNTRTNPKRIISIRPHTTSRLNRYTVFPPVPLSILSESLIILFQPQV PQISHTLDKQIC >gi|316915861|gb|ADCN01000023.1| GENE 81 103588 - 104529 1303 313 aa, chain - ## HITS:1 COG:CAC2324 KEGG:ns NR:ns ## COG: CAC2324 COG0463 # Protein_GI_number: 15895591 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 9 305 3 301 315 330 54.0 2e-90 MFENNQPSVAVLLPCFNEEVTIGKVVRDFKAALPGAAVYVYDNNSTDRTAEIAAAEGAIV RKEPRQGKGNVIRAMFEDIDADVYVMADGDDTYPADAAPAMVAKVLEGYDMVIGDRLSST YFQENKRPFHNFGNRLVRGSINGLFNAHVTDIMTGYRAFNFTFVKTYPVLSRGFEVETEM TIHSLNNNLRLYEMPIQYRDRPEGSVSKLDTVGDGIKVMSTIFRMIREYKPLPFFGRLGL IIGIVGIVLCGTVTFEFAKTGVVTHFPTLIGAVMLVIAGLLLIIAGIILDVMAKNDRKTF VIDTNKIAYNKRH >gi|316915861|gb|ADCN01000023.1| GENE 82 105010 - 106788 727 592 aa, chain + ## HITS:1 COG:no KEGG:EF2179 NR:ns ## KEGG: EF2179 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 1 588 79 654 656 213 26.0 2e-53 MRTDEYVVGTPLAFSQRYSGYSYFNDLFGNKPADMFIVKDAPVLALAELFRPFHWGYILF GSSRGLAFYWSARLVVLFLAAYEFFLCISNDRRQEKHKGVAFVGAILIACAPLVQWWFAV NALPEMLIAIFVSIVCFDRYLGDTESGHRAAYAAVILICAGMFALTLYPAWQISLGYLLA VLILCIVIRHWGHIRISRKDTLIFVGEIALFCVILGSAVVTSWGTIQSMLHTAYPGARQS IGGGLPPLSLISSVGTLFFPFKDYAVDSVTTNMVEASRFVDLFPLGIILAVFGMIKRKKV DVLSVWLIAVIALFSVFACVGMPLWLSKIMMLTSVTSGRCVVVLGVANIAVLVRAAAIID GRLSWKQSLLVTFVFAVILAWANHAMYLSYIGRLLVVACFAIAGLLSFAVLNNGVIARTV VAPIVSVGLLVSGLSVNPVQYGSAPVTKQPLIQQVQSLQSENPGMWAIDDAFGSQLANLA VANGIHTLNALEVTPDLATWKKLDPNGQWEEIYNRYAFVSVNVVEQESADVFTLVAPDSF TVHVTPEQLRKLGVSNVLSPQKLDAMQFNGYSFERIGETIDGRTPYRIVQHQ >gi|316915861|gb|ADCN01000023.1| GENE 83 106838 - 107860 1192 340 aa, chain + ## HITS:1 COG:SPy0936 KEGG:ns NR:ns ## COG: SPy0936 COG1088 # Protein_GI_number: 15674955 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Streptococcus pyogenes M1 GAS # 10 337 4 340 346 493 71.0 1e-139 MAEELFTPHNIIVTGGCGFIGSNFVHYVYNNHPDVHVTVLDALTYAGNLENIRGILGDRV EFVHGNICDAELLDKIVPGHDAIVHYAAESHNDNSIANPEPFLKTNVEGTFRLLEAARKY DVRYHHVSTDEVYGDLALDDPAKFTEQTPYHPSSPYSSTKASSDLLVRAWHRTFGIRATI SNCSNNYGPYQHVEKFIPRQITNILEGLRPKLYGNGENVRDWIHTDDHSTGVWTILTQGR LGETYLIGADGERNNITVLRDILTVMGKSPDDFDWVKDRPGHDRRYAIDSTKLQTELGWK PTHTDFQKGLEQTIKWYTDNRAWWEPAKAATEARYKQQGQ >gi|316915861|gb|ADCN01000023.1| GENE 84 107868 - 109319 2146 483 aa, chain + ## HITS:1 COG:Cgl0332_2 KEGG:ns NR:ns ## COG: Cgl0332_2 COG1091 # Protein_GI_number: 19551582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Corynebacterium glutamicum # 193 480 2 268 271 240 50.0 4e-63 MAFEFEKELKVEKTNIPGLLVFDLPVHGDNRGWFKENWQRAKMMGLGLPDFGPVQNNISY NATKGVTRGIHAEPWDKYISIAAGEIFGAWVDLRPGESFGQVFTTRLDPSRAIYVPRGVG NSFQALQDGTVYTYLVNAHWSLEQKKTYTFVNLADPELNIQWPIPLEESERSEADLHHPM LKDAKPMAPKRTLVTGCNGQLGHAIRAYAEAHGLEGFEYTDIDEFDFSDPKAYEAYDWSL YGTIINAGAYTAVDKAETAEGRPIAWKANAQGPALLAKVAKDHHITLVHVSSDYVFDGTA KEHMETEAFAPLGVYGQTKAAGDIAVANAPEHYILRSSWVIGEGHNFVKTMMMLSNKVAD PDDKLEQVTVVDDQYGRLTFTKDMAEAIFHLLDSHAPYGTYNLTGSGAVKSWADIAAEVF DLANGNGSKVKPISTAEYFANATNPVSPRPVNSALDLAKIGEAGYVPADWEETLKTYVQK ELG >gi|316915861|gb|ADCN01000023.1| GENE 85 109460 - 110356 1233 298 aa, chain + ## HITS:1 COG:NMB0062 KEGG:ns NR:ns ## COG: NMB0062 COG1209 # Protein_GI_number: 15675999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Neisseria meningitidis MC58 # 1 282 1 282 288 404 68.0 1e-113 MKGIILAGGSGTRLYPLTTVTSKQLLPVYDKPMIYYPLSVLMMAGIRDILIISTPKDLPN FERLLGDGSQYGVSFSYKVQPSPDGLAQAFILGEEFIDGEPCALVLGDNIFYGNGLGRTL RKAATVEHGATVFGYYVDDPERYGVVEFDENKKAISIVEKPEHPASNYAVTGLYFYDERV TEFAKQVKPSPRGELEITDLNKMYLEDGTLNVQTLGRGYAWLDTGTMDSLYEAGEFVRTV QRAQGLPIAVAEEIAFENGWITRDELMEAAVKYGKSPYGKHLKDVAENKIIVKPRDVR >gi|316915861|gb|ADCN01000023.1| GENE 86 110690 - 111688 277 332 aa, chain + ## HITS:1 COG:no KEGG:BLD_1571 NR:ns ## KEGG: BLD_1571 # Name: wcaA4 # Def: glycosyltransferase for cell wall membrane # Organism: B.longum_DJO10A # Pathway: not_defined # 1 332 108 439 439 655 99.0 0 MLTRASSPDIIRFGLDAFPEIGADDGTAIAVEAVFNNAQGMRTSREIIETAFSDIISPRD VWSVTVCAYRGDSIRESFSKMTSKRLGYMEDTYEFFVIANESQTLQNYADFRALKYRIGA GRSGRRLYSAEEFSKRQREVHEMYLLLCEYCNSQRDDTDFYSRTSLWMKRQYLLMLVTDW VTRLPAADQDKGYTAIVETWGAADAAIMLFDPLIARGESLLSKNSIPPGNDEFYRWGQIL AKIVPMVDDGRNLPRYDQYRQLEQALEHHVAEIQLKEQQALQAEQERIEAQARFKKGTLM RRVIDKVMPAGSLNRDLVSVIRSHAQRAKRER >gi|316915861|gb|ADCN01000023.1| GENE 87 111726 - 113726 641 666 aa, chain + ## HITS:1 COG:mlr7561 KEGG:ns NR:ns ## COG: mlr7561 COG3754 # Protein_GI_number: 13476282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis protein # Organism: Mesorhizobium loti # 9 598 2 581 609 310 34.0 9e-84 MSVNSGHKQRLGIYCFYDKYGHAASFIKTFLDDLMDNLDDLVVVVNGQLSDQARQLFSEY TKTIIVRENKGLDVAAYKQAILTLGWEKLESYDEVICLNDTVMGPVYPFREMFACMDRKD VDFWGITAYAGETVDKEQIPTHLQAYWHAYRRSLVSSPAFHEYWETMPLWKDYAEVTRKH EMTFTKHFTDLGFTWASYIDWRKYQGYSSYPLLYMPMQIVRDDRCPIFKRRSFFVDYSAY FDQTAGQPALDLYEYLRDHTDYDVDMIWDAILPSYNIDDIRKAMHLDYVLPSQAINPQTH DRPRSAFIYHVYFMDLLEDTCHYIASLPEETDLYITSTEDKIPQIREYMQQHGISHQATF IPVINRGRDVSALLVAACPVVLSGKYDVIGFAHDKKSSQNQENGHHGTESQGFAYKLMEN TLGSEAYVKNILTLFAENPRLGQVTPPPPYHALYFAHTIPHDWGANYEITKELLEDRLGI HVPLSPTKPTASAMGSCYWFRVEALKPLFEYGWKYEDFLPEGQMGEDGTISHAIERANGY ICQSRGYYPAWVLSDRYARIEVDSLFYTTAMMMGSSAEARSGESLLTNLRGLNLATSRWR TLKIAKHRTHLGLQWITSRTVLKLPKPAQSVIYTAAWAPITAVRFVIGQIRAVLRGDFKH KSAPKK >gi|316915861|gb|ADCN01000023.1| GENE 88 113733 - 114581 700 282 aa, chain + ## HITS:1 COG:SPy0789 KEGG:ns NR:ns ## COG: SPy0789 COG1682 # Protein_GI_number: 15674832 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Streptococcus pyogenes M1 GAS # 27 282 1 253 253 214 48.0 1e-55 MANEDMNTMLIKLKERYRYSFIVLKEMVRTDFKLRYQGSFLGIAWSVLKPLMLFCVMYVV FVKFLKFTDGTPTFPLVLLLGISLWNFFAEATNMGLTAIVGRGDILRKIHFPNYIIVVSA TVGALISLAINMCVVLVFCIFNQVHFTWNVLWLPLNFIEFYALALGTALLLAALNVYFRD MQHIWEVLMQVFFYATPIIYPLSLVTEKTNNPIFAKIMLLSPPAQIIQDIRHNLIAPDTT PTVWKEISNWGIRLIPVALTFFILWLGIHIFRKYSQKFAEVL >gi|316915861|gb|ADCN01000023.1| GENE 89 114605 - 115849 570 414 aa, chain + ## HITS:1 COG:SPy0790 KEGG:ns NR:ns ## COG: SPy0790 COG1134 # Protein_GI_number: 15674833 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 1 395 1 376 401 362 50.0 1e-100 MDNRKTVLKVEHVAKSFRLPTEQASGLKQAVINWTKGISGYKMQHVLRDINFEVKEGDFF GVVGRNGSGKSTLLKLISGIYMPDQGSISVDGKLVSFIELGVGFNPELTGRENVYLNGAL LGFSQEEIDAMYDDIVEFSELGEFMDQKLKNYSSGMQVRLAFAVAIKAKGDILVLDEVLA VGDEAFQRKCDNFFTEVKQDPTKTVILVTHSMDSVKKYCNKAILIKDGEIIASGNQDDVA DRYTLENFKKNAGPLGDDANNETDDKEYPTGLSERVPTLKVNISSSSVADGVEPLEFEIE YEFNEDREAYIGIALLDSRRSGHAYDAGSQTDNLGMVITQRGHRTMRFEMPLDIFNNGEF KIYATLRSVEKPGDDPQMIAFTNDENSGYFAIRNDRNGEAGMLSSRAIQINRLD >gi|316915861|gb|ADCN01000023.1| GENE 90 116156 - 117397 370 413 aa, chain + ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 112 326 139 353 353 71 28.0 3e-12 MGYRVVLITDDDTSAYEYEVNQIVERRIIPSYCKANAENYENRAKALADILNAEQVDALV YGQWLGQTLPWDMLLCKMSGVSFLIYTHGVMRCMFDADCMRAELALTYRYSDGVITLSDV NTRFWQLFNAHVWQTINPLTIEPDSSKRAALDSYNIVWVGRLSLFDKRPDEALRVMAEVV KQCPDAHLIMVGPFADDATEQQLRQLRDSLDLSDAVSFVGAQDNVLPYLQKASVYLHTSL YEGYPVALAEAKTVGIPSVIYALPYLTLVQDESVIQVGQGNRSAAASAICGLWQNPEKMK QLGDIAFNSMVGMSNYDFARLWRGIFDSLGSSTASSADDDVMVDLMIDARIASSKSYEER INSLCSNQALLEQSLSSKSMEIQSVKESTSFKVGLLITAIPRKIKAILNSLRR >gi|316915861|gb|ADCN01000023.1| GENE 91 117424 - 118584 799 386 aa, chain - ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 383 482 819 824 197 35.0 2e-50 MIMILSESFSDPTRVPGITLSEDPMPNIRALKNTTTSGLMLSPGYGGGTANIEYQALTGW DLALFDNSMQVPYQQLVPHQKVTETFNQLWNDRYGASGSIAFHPYYKNMYLRDIDYKKFG FSHFYTLDSNPPITHHDGLDNSPYASDAEAYQNVVDELQNSNHPQFIQLATMQNHPPYSD WYSDNQFKDADTTNLPADEKTGVDTYIKGVSITDQATTDFLNQLDAIDQPITVIFYGDHL PGVYTTARASSKNTITMQETDYFIWSNEASASAGTKLDPAAAATSYTSPNYFMAMASDHM NTKVSAYIAFLSAMRAEIPATERLTLGVSGVTDNTPTVYLDANGNVVSKKELSSQQKKLL NDYRLIQYDMTAGKNYLSSTKFFDVK >gi|316915861|gb|ADCN01000023.1| GENE 92 118581 - 119429 265 282 aa, chain - ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 58 268 270 467 824 62 24.0 1e-09 MAIVDSAAVLFIQWGTYTEPTYTAPSTVDETTRLLNSIRGQLTRFVAQMWMEQKYIWLLN FCVLGMVYLVLIFVLNRFWVATALFAIITSVFAVANHIKIQLRNEPVIPSDLSFISSGNG GEIASFIPKDSQALVNNTITMLVWLTIACLLLQFIDGRRCVISFHWRRPLRNTKTIIGNC TRIVAVIVSTSLLCSFTLNLNTVGSWSHNWAQALGDSPTLWDAAGDASLNGPTINFLRLA NPKTMTKPSDYSQATMQEIAQRYNKIAKKPTSPAAIISRTIP >gi|316915861|gb|ADCN01000023.1| GENE 93 119795 - 120061 177 88 aa, chain - ## HITS:1 COG:no KEGG:BLD_1565 NR:ns ## KEGG: BLD_1565 # Name: mdoB2 # Def: phosphoglycerol transferase # Organism: B.longum_DJO10A # Pathway: not_defined # 15 88 727 801 801 77 52.0 1e-13 MKTPVTHLTRQAQCSQAQTQIPAISRLVSSNASWGDGSTVYLDAEGNHVTSKDLSKEAKQ MLHDYRLVQYDMTKGKNYLSNYGFFDVQ >gi|316915861|gb|ADCN01000023.1| GENE 94 120211 - 120654 211 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 91 147 1 57 57 115 100.0 7e-25 MNASSRSAANSRLSRATARVTVDRETSAPCSSLNRSQILVAVCRCLRQFARSSASHCSIT GRYGSITDARGFLTDGTADRSSFARYLRTVGSLTCVFRAIDATDSPFRRKRRIDCTWGML IIILSGPFWRRYKHHPVKTIPWSACSA Prediction of potential genes in microbial genomes Time: Fri May 13 13:01:51 2011 Seq name: gi|316915818|gb|ADCN01000024.1| Bifidobacterium sp. 12_1_47BFAA cont1.24, whole genome shotgun sequence Length of sequence - 61242 bp Number of predicted genes - 51, with homology - 45 Number of transcription units - 31, operones - 12 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 291 59 ## 2 2 Op 1 . + CDS 176 - 1135 1275 ## BL0473 hypothetical protein + Term 1184 - 1220 -0.9 3 2 Op 2 . + CDS 1256 - 2131 722 ## COG0676 Uncharacterized enzymes related to aldose 1-epimerase + Term 2162 - 2231 12.4 - Term 2164 - 2198 5.2 4 3 Tu 1 . - CDS 2249 - 3430 841 ## COG3152 Predicted membrane protein - Prom 3455 - 3514 2.8 + Prom 3553 - 3612 1.6 5 4 Op 1 . + CDS 3705 - 3803 179 ## BL0470 hypothetical protein + Term 3810 - 3882 4.8 + Prom 3805 - 3864 2.8 6 4 Op 2 . + CDS 3987 - 5507 2438 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 5552 - 5595 12.2 7 5 Tu 1 . + CDS 5732 - 5980 145 ## BLD_1260 hypothetical protein + Term 6032 - 6067 -0.6 + TRNA 6109 - 6184 48.5 # Glu CTC 0 0 + TRNA 6221 - 6295 63.3 # Gln CTG 0 0 + Prom 6220 - 6279 79.9 8 6 Tu 1 . + CDS 6437 - 6925 745 ## BLD_1259 hypothetical protein + Term 6949 - 6998 11.4 9 7 Tu 1 . - CDS 6877 - 7026 67 ## BL0466 hypothetical protein - Prom 7142 - 7201 4.6 10 8 Tu 1 . + CDS 7322 - 13222 8966 ## BL0464 hypothetical protein + Term 13273 - 13320 8.4 11 9 Tu 1 . - CDS 13321 - 14205 636 ## COG3619 Predicted membrane protein - Prom 14365 - 14424 2.9 12 10 Op 1 . + CDS 14375 - 14482 208 ## - TRNA 14488 - 14559 74.5 # Thr GGT 0 0 13 10 Op 2 . + CDS 14564 - 14887 88 ## - TRNA 14920 - 15007 67.7 # Ser GGA 0 0 - Term 14881 - 14916 5.1 14 11 Op 1 . - CDS 14955 - 15311 70 ## 15 11 Op 2 . - CDS 15281 - 15394 89 ## - Prom 15485 - 15544 3.8 16 12 Op 1 5/0.000 + CDS 15586 - 17397 2686 ## COG0672 High-affinity Fe2+/Pb2+ permease + Prom 17472 - 17531 2.3 17 12 Op 2 3/0.000 + CDS 17574 - 18254 1288 ## COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport 18 12 Op 3 4/0.000 + CDS 18404 - 19681 1526 ## COG4393 Predicted membrane protein 19 12 Op 4 10/0.000 + CDS 19703 - 21007 1963 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 20 12 Op 5 36/0.000 + CDS 21041 - 22264 183 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 21 12 Op 6 . + CDS 22280 - 23077 1380 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 22 13 Tu 1 . + CDS 23196 - 23759 904 ## BLJ_0205 hypothetical protein - Term 23708 - 23748 -0.4 23 14 Tu 1 . - CDS 23765 - 24355 697 ## BL0448 TetR-type transcriptional regulator 24 15 Op 1 1/0.000 - CDS 24479 - 26641 2094 ## COG1511 Predicted membrane protein 25 15 Op 2 . - CDS 26638 - 29268 3060 ## COG1511 Predicted membrane protein - Prom 29319 - 29378 1.5 26 16 Tu 1 . + CDS 29623 - 30909 1461 ## COG4905 Predicted membrane protein 27 17 Tu 1 . + CDS 31088 - 32542 1819 ## COG0362 6-phosphogluconate dehydrogenase + Term 32556 - 32598 5.5 - Term 32797 - 32843 14.8 28 18 Op 1 4/0.000 - CDS 32846 - 33688 873 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Prom 33816 - 33875 1.9 - Term 33790 - 33823 4.0 29 18 Op 2 5/0.000 - CDS 33940 - 34965 1184 ## COG3429 Glucose-6-P dehydrogenase subunit 30 18 Op 3 . - CDS 34962 - 36500 2026 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 36695 - 36754 80.3 + TRNA 36676 - 36751 77.7 # Lys TTT 0 0 + Prom 36678 - 36737 78.1 31 19 Tu 1 . + CDS 36824 - 38458 1736 ## COG4690 Dipeptidase + Term 38568 - 38604 0.6 - Term 38473 - 38521 2.3 32 20 Op 1 1/0.000 - CDS 38532 - 39566 1425 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 33 20 Op 2 . - CDS 39590 - 40429 792 ## COG1309 Transcriptional regulator - Prom 40563 - 40622 1.9 34 21 Tu 1 . + CDS 40519 - 41796 1729 ## COG0552 Signal recognition particle GTPase + Term 41908 - 41952 4.7 35 22 Op 1 24/0.000 + CDS 42164 - 43459 1796 ## COG0004 Ammonia permease 36 22 Op 2 3/0.000 + CDS 43461 - 43799 545 ## COG0347 Nitrogen regulatory protein PII 37 22 Op 3 . + CDS 43892 - 45733 2255 ## COG2844 UTP:GlnB (protein PII) uridylyltransferase 38 23 Tu 1 . - CDS 45767 - 47212 1334 ## COG0534 Na+-driven multidrug efflux pump - Prom 47317 - 47376 2.9 + Prom 47301 - 47360 2.0 39 24 Op 1 . + CDS 47418 - 48947 2027 ## COG0305 Replicative DNA helicase 40 24 Op 2 10/0.000 + CDS 48950 - 50419 1679 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 41 24 Op 3 . + CDS 50522 - 51274 884 ## COG3442 Predicted glutamine amidotransferase 42 25 Op 1 . + CDS 51423 - 51710 418 ## BL0428 hypothetical protein 43 25 Op 2 . + CDS 51707 - 53527 2051 ## COG0661 Predicted unusual protein kinase + Term 53684 - 53733 3.4 44 26 Tu 1 . - CDS 53542 - 54561 1013 ## COG1609 Transcriptional regulators - Prom 54650 - 54709 4.8 45 27 Tu 1 . - CDS 54833 - 55051 95 ## gi|227545694|ref|ZP_03975743.1| hypothetical protein HMPREF0175_0116 - Prom 55286 - 55345 2.0 + Prom 54875 - 54934 4.8 46 28 Tu 1 . + CDS 55050 - 56375 2095 ## COG1653 ABC-type sugar transport system, periplasmic component 47 29 Tu 1 . - CDS 56406 - 56489 66 ## + Prom 56579 - 56638 2.7 48 30 Op 1 38/0.000 + CDS 56663 - 57589 1329 ## COG1175 ABC-type sugar transport systems, permease components 49 30 Op 2 4/0.000 + CDS 57610 - 58428 1311 ## COG0395 ABC-type sugar transport system, permease component 50 30 Op 3 . + CDS 58590 - 60566 2925 ## COG3533 Uncharacterized protein conserved in bacteria + Term 60702 - 60749 11.0 + Prom 60695 - 60754 3.5 51 31 Tu 1 . + CDS 60861 - 61242 327 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316915818|gb|ADCN01000024.1| GENE 1 3 - 291 59 96 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MASVSGHRLISAEPASAASVTAGNAVTCAIASRLSSMVIYAPLRPPLDCSASLGSPQSPT VTAQQQLWTGHARASIARLSARLRLQTVHWTVCFAA >gi|316915818|gb|ADCN01000024.1| GENE 2 176 - 1135 1275 319 aa, chain + ## HITS:1 COG:no KEGG:BL0473 NR:ns ## KEGG: BL0473 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 319 1 319 319 491 98.0 1e-137 MTIELNREAIAQVTALPAVTEAAEAGSALISLWPLTEAMQMDNDAKYAENLQVRVTHAFA RILTGQDVTMPDAEFVYEGADEIPGRPQSIVDTLLAANDAYDTMAGYSESGDVQLIFDAA EALGVDWDSHVEAAVRETVVSVEAQVEADAEAGGRLAASGEPADVAVRFATALAVCDALL NVVSGHAETVGLVGPAVADAADVADEARATAIVTLPILLYVNELREQCSIPRICLTDQQI LDLIDTRAKAAGADTLTATAEYIAPLAGAEWTKHRDDVLWNPDEAKKKAKEEDEKRNKEA LAAKFAHIKDDPGKETVEL >gi|316915818|gb|ADCN01000024.1| GENE 3 1256 - 2131 722 291 aa, chain + ## HITS:1 COG:VC2001 KEGG:ns NR:ns ## COG: VC2001 COG0676 # Protein_GI_number: 15642003 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzymes related to aldose 1-epimerase # Organism: Vibrio cholerae # 5 285 24 291 296 127 30.0 2e-29 MGNGVNLRTLTNDGGSAVISDYGAHLLRWAPAGQPDVIWTPRTWHFEAGQPVGGGVPVCF PWFGPGFVHGGQTAKRPIHGFARLRQWALDEGAFTGARVRYVLDSERLTTGEVPWIEDEP NVRFHAAYEVCASDTLTMTLTVTNTGGEPMSYEAALHSYLHVGDVLGARLVGLRGATYLD ATEAGFPPKLQEQPSVMFGDQPVDRVYYSDAALELQDHVLGRVIRIGKTGSPQTVVWNPG EQGGNAIAHAKTGEWRGFVAVEAAACRDRIVALSPGESYMLSQSIAVMPLG >gi|316915818|gb|ADCN01000024.1| GENE 4 2249 - 3430 841 393 aa, chain - ## HITS:1 COG:VCA0927 KEGG:ns NR:ns ## COG: VCA0927 COG3152 # Protein_GI_number: 15601681 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 123 209 7 92 116 80 41.0 6e-15 MSDPNNVPLPQQPEANGTPTPNPVPQYGAPAPAQPSQPAQPAYGQPAYGQPAPTANSYGQ AVPTYGQPAPDANTYGQSAPAYGTPAPDGNPYGPVPPSYGQYAAPTATVPLDKPYYGCSF QEAFLRFWKKYTVFKGRASRSEFWWWVLAAFGINIVLDILNTATDEKLGFLATIWGLVTL IPTLALSVRRLHDTNKPGWWVAIFYIAMVIGLIIMIIGGGAALYGGFRSLGSYDYGYGSM AAGGLGAAVIGALITLAGCVVYIVFMALPSKPEGARFDDGAAATPMPQGAYGAPYSTPVP PNFAAPNAPAPGFNQPAPAYGQPPMPTPDYGQPAAPAPDYGQVPAPQYGQPEAPAPQYGQ VPPMPQNAGDESATPSEHTAPAGDNAQKPWQGQ >gi|316915818|gb|ADCN01000024.1| GENE 5 3705 - 3803 179 32 aa, chain + ## HITS:1 COG:no KEGG:BL0470 NR:ns ## KEGG: BL0470 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 32 75 106 106 63 100.0 2e-09 MNHEYTDAAVEQRESHEDESQDWDLLFVGLAC >gi|316915818|gb|ADCN01000024.1| GENE 6 3987 - 5507 2438 506 aa, chain + ## HITS:1 COG:Cgl1263 KEGG:ns NR:ns ## COG: Cgl1263 COG0008 # Protein_GI_number: 19552513 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Corynebacterium glutamicum # 14 505 3 486 493 571 58.0 1e-162 MTDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGTLIFRIEDTDAVR DSEESYNQILESLRWLGIDWDEGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFS TPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKAAFRAEGRKPALRIKMPDEDIAFDDLIR GTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEVNVVLRGEDLLSSTPRQIVLYRYL MELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIA PDRDVFSMDEMTEKFDVRDVKANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDG VVSADNWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVGSLLSTEGYLEPADDAKKQLK DSAGEVLDKAIAALEAVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVS PPLFESMEIVGKPVSLARLKGLREHL >gi|316915818|gb|ADCN01000024.1| GENE 7 5732 - 5980 145 82 aa, chain + ## HITS:1 COG:no KEGG:BLD_1260 NR:ns ## KEGG: BLD_1260 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 82 1 82 82 166 100.0 3e-40 MKRLIGNRAAVFDVTLHYKHRDALAVAREHKRLIWFLKADLPAMNVQGKDHCLICNFISA LDGNSSVVLTDNPSVEFMQIHQ >gi|316915818|gb|ADCN01000024.1| GENE 8 6437 - 6925 745 162 aa, chain + ## HITS:1 COG:no KEGG:BLD_1259 NR:ns ## KEGG: BLD_1259 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 162 1 162 162 173 99.0 2e-42 MSAGQQAVPANNANNASNEGAQKKHMSKAAVAIIAVVVVAIIVVAGVFGFRAYSDAQYNN AVAACAAASENVRNATNDYNNLVNGDASEAAALTKKDVKDASTLDALNKELSVELPVYEG CVADDTAGFKSATAKLNEQADWYKAYTQSLQKAVDAVNASKK >gi|316915818|gb|ADCN01000024.1| GENE 9 6877 - 7026 67 49 aa, chain - ## HITS:1 COG:no KEGG:BL0466 NR:ns ## KEGG: BL0466 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 49 44 92 92 94 97.0 1e-18 MQQHYSSKPIEQNSKSRLAQPQDGFDDNGEAVLAYFLEAFTASTAFCSD >gi|316915818|gb|ADCN01000024.1| GENE 10 7322 - 13222 8966 1966 aa, chain + ## HITS:1 COG:no KEGG:BL0464 NR:ns ## KEGG: BL0464 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 1966 1 1966 1966 3423 98.0 0 MKKKKTISAALATALALTCMGSGGGTAFAVPLSDADLQTLASQIQQINDTSDSATASETP SAQADAVEGWTIDSNIAQGGEILEMANGWLHLKSTASNGNAAANPSSSNNWPAVAVWGTD YDFSKAGSFHATIKSPQEGSANRFGFYLGYNDPGSGLFIGYDSDGWFWQTYTGGGSGSWY SGARIAAPSANEEHDIQVSWTDAEVATLTVDGQKAFDVDYSAMTNLSNKLAIKAGSWKGL NQVTDVYIKDFPEVVEAAKHAVSGNVVDAEGAAIEGATVRLDKTKVKTGADGTFSFADIE EGEHTLSIAKEGYEDVSQQVTVSGADLAIDPITLNKTVQVASETLKTKKMEVQIKKNFPS VLQYTMTDGKVMYGQSKDVRTVEINGTNIELGDDDVTFKKVSDTEATYTLKVKDEAKKID AVITVQITVKANQLHLNVTKIKNNLSEGIPEGNGVEENAIQTLSFPNQSLVSVRSSQENA QFTGARMSSNTQKPGDTNFAVTEDTNVTDSDYTYGFISGAGLSAGLWSNSEHDGTYVAAP VRGGSQNTRVYATTQQTGDATSLGLASAPWYYHRTVTDSKGKKYTVAETALPQMAVAIAG DENEDGAVNWQDGAIAYRDIMNNPYKSEEVPELVAWRIAMNFGSQAQNPFLTTLDNVKKV ALNTDGLGQSVLLKGYGNEGHDSGHPDYGDIGQRLGGADDMNTMMEEGSKYGARFGVHVN ASEMYPEAKAFSEDMVRRNSAGGLSYGWNWLDQGVGIDGIYDLASGSRVSRFADLSKEVG DNMDFIYLDVWGNLTSSGSEDSWETRKMSKMINDNGWRMTTEWGSGNEYDSTFQHWAADL TYGGYTSKGENSEVMRFLRNHQKDSWVGDYPQYGGAANAPLLGGYNMKDFEGWQGRNDYA AYIKNLYTHDVSTKFIQHFKVTRWVNNPLLTADNGNAAAVSDPNTNNGNEQITLKDSNGN VVVVSRGSNDTSSAAYRQRTITFNGVMVASGAVSAGDGSSTGDESYLLPWLWDSSTGKLV KDSEQKLYHWNTKGGTTTWTLPDSWKNLSSVKVYQLTDQGKTNEQTVAVSGGKVTLTADA ETPYVVYKGEAKQIQVNWSEGMHVVDAGFNGGSNTLTDNWTVSGSGKAEVEGDNNAMLRL TGKVDVSQRLTDLKAGQKYALYVGVDNRSTGDASVTVTSGGKVLATNSTGKSIAKNYIKA YGHNTNSNTENGSSYFQNMYVFFTAPENGDATVTLSHKSTDGAHTYFDDVRIVENQYSGI TYEKDGTLKSLTNGFENNAQGIWPFVVSGSEGVEDNRIHLSELHAPFTQAGWDVKKMDDV LDGTWSVKVNGLTQKGTLVYQTIPQNVKFEAGAKYKVSFDYQSGSDDIYAIAVGQGEYSA GSVKLTNLKKALGETGKAEFELTGGVNGDSWFGIYSTATAPDLQGSTGNAQDFGGYKDFV LDNLKIERIESQTRTKAEAQDKVKEIRGKYDSKRAELSDAAWQQYQDTLVKARVLINKNG ATAEDFTKAYDILVALDEYMKTAPGNESSDKYDVAADGSDELGGYTVATGSEEPTAGLPS EGPADLAQDSNDSTHWHTSWSENAVGNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKI KGYKITLTLADGTTKDVVTDAEFSTTTMWQKASFDAVENVTAVRLTVLSSAGQSDSQANK FASAAELRLTTDREVEEETVAPDKTDLNDTIAKANGLKESDYTAESWTALVKAREAAQAV ADNDKATAYDVALALTNLESAIAGLEKTGEEPGPGPVEVNKTDLQTAVNKASKLEKADYT TNSWEAFAEALKAAQQVLDNKNATQQDVDTALSALQDAISKLEAATEPKPNPEPGVVDKA ALNATINKAAAINLGLYTDDSANALRAALKKAREVSDNSNATQKQVDAAREALEKAIAGL VKRTAAKGDGNVVSNTGANVVTIAVAGLLLAGAGAAIAYRRNREQM >gi|316915818|gb|ADCN01000024.1| GENE 11 13321 - 14205 636 294 aa, chain - ## HITS:1 COG:BS_yoaK KEGG:ns NR:ns ## COG: BS_yoaK COG3619 # Protein_GI_number: 16078924 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 48 247 11 181 225 68 34.0 1e-11 MCKAARQLLNTAKQQRKASPTMTSHLAEAGRTLIPRKDDRYGLLSPALVILTFVAGLVDA LSYLALGHVFVANVTGNIVFLGFAFAHAQGFVWWTSALTLATFMIGAFIGGRIIHYFGAN RARHLLVSTSIQLAFVAAALVGIYLLNQFAPEPSMGGTDASAIARTAQPSLNFPTARHID LHIILLIVLLAPAMGIQNSTARKLSVPDLPTTVLTMTLTGIIADTSAHGHEQSKLGRRAI VMLALALGALTGATLQTRGHEDVILMVMIVCLIAVIVMMIPHVHSDARWVTGKH >gi|316915818|gb|ADCN01000024.1| GENE 12 14375 - 14482 208 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQSDNSHHEAHQNDLNYSSEYQYDMYMYAEYGIEW >gi|316915818|gb|ADCN01000024.1| GENE 13 14564 - 14887 88 107 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCARLRAVERLAQQYTQSRITQIDGCTRKYSGALSCTHERNIGYFALMWHSDVPRNRIFV FLCAVVARKLWEFGRLGICAMPRHCKNSECARLCTYLDRCVYACGCG >gi|316915818|gb|ADCN01000024.1| GENE 14 14955 - 15311 70 118 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLHHGKRLAIIHAMACACSFWFASGLLTCLESLLFALVHPPVRSPVAHAVRTTCTSAQAL IGGPCPQSDTPQPALNVHLSESCGSLFELPTELTSSKHCSAWRIRLVVYGARLESVLV >gi|316915818|gb|ADCN01000024.1| GENE 15 15281 - 15394 89 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNSPRLATPHPSYCMTNCFTKVHSLKSLCCITARGWQ >gi|316915818|gb|ADCN01000024.1| GENE 16 15586 - 17397 2686 603 aa, chain + ## HITS:1 COG:FN1251 KEGG:ns NR:ns ## COG: FN1251 COG0672 # Protein_GI_number: 19704586 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Fusobacterium nucleatum # 206 575 29 406 433 230 37.0 8e-60 MVRRAQAALRSVEHTSVRQLRVLAAIVFLFAMVIATVAPAVTAPMAFADSSTSSSSSSSS SSVDYATWAEVSKAMDKQLNSGLKTYKDGNTAGATSDFMGAYNKIYVASNFTAVVHDTIG ADKQLAQQQAFQSVQNLSYTPSNDDQLAQQIDALTADLDATAQQLDTNADLAKPKAYAEA LQAQLAKERKELDAKKKKNPGKGNRSWTDVANEMTPILDNAYKAYEKGDGAKGATLVNNA YYQYYEKLGFEKNVMNAISGNRVSQVEYQFKMCRKSMNAGASLKDTKKLIDDLKAMLIKD AGILDGGAADKEDGFTKLVTSSSGQAFLVLIREGLEALLVVAAIVAYLVKSDNKRFVKWI YLGVLVGLLGAGLVAVIFVFAFGGSGPIQEIMEGTCALIAMGMLLWTSNWMLNKSSVEAW NRYIRKKTEAAVADAEAAASADNVTLKTVVSLAMLSFLAVFREGAETVIFYESIYTMSRD TRGMWIGGLTAAVVLVGIFLLFRFTSVKIPIGPFFLVTSILMSVLVVVFAGGGVHSLIEG DLLPAFYLNGVPTNDWLGLYPYVECLVAQAIAAVAVIALFVVGFIKQRKLKAQATAEVPA VKA >gi|316915818|gb|ADCN01000024.1| GENE 17 17574 - 18254 1288 226 aa, chain + ## HITS:1 COG:TP0971 KEGG:ns NR:ns ## COG: TP0971 COG3470 # Protein_GI_number: 15639955 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein probably involved in high-affinity Fe2+ transport # Organism: Treponema pallidum # 52 226 41 204 204 144 42.0 2e-34 MKNKKLAALLGLLLAGSMTVSMAACGSTNSASDTKADSSSQSSDSSSSDSSSDSGAGFEE VPVGPSGTAEEQDQDAGPLTVGAVYFQPIDMEPSSMGLKAADASFHLEADIHANQKGTEL GYGKGDFVPDLTVNYTIIDKSTGKEVEGGTATSGTFMQMNASDGPHYGANVKLDKAGTYQ LKLSIESPASKGWMLHVDPETGVKGHFWTEPIEVTFDNWDYTPRQW >gi|316915818|gb|ADCN01000024.1| GENE 18 18404 - 19681 1526 425 aa, chain + ## HITS:1 COG:FN1355 KEGG:ns NR:ns ## COG: FN1355 COG4393 # Protein_GI_number: 19704690 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 135 424 5 294 298 160 34.0 4e-39 MLEQFVAVMPGTLAPALLVMSLSVMLTVGEGRDKPISSHWRLIGLIVGLIAAIVFAGLRA SAVINQRTFVNYPVLWCAIIADILTIVVVVFARRITTNWQQHKVFMHIANAVAAIDIALT LFYALPDVILQLTIWVEPGETAFTSAMLLRALGFLLGVAMSIIVAAIFRTMRTTAVRWAF TVAVAAMMVILLIQHFTGLAQILQARGFPMNHTMFVALAWSINQNSTMIMAQALVFLIPA VASIVAGFRMKTHDVPGANEATLRRHKVFRRHAIAAAVWSLIAAIGVTATLTVGVAATHQ TITLSPPEAYSLKDGVATIPFSQVEDGHLHRFEYKAKDGTVMRFIIIRKNGGAYGIGLDA CENCGDAGYYEKDGKIICKKCEVAINLATIGFKGGCNPIPFPYKTGHGKITIQTTDLDAL SAHFR >gi|316915818|gb|ADCN01000024.1| GENE 19 19703 - 21007 1963 434 aa, chain + ## HITS:1 COG:FN1354 KEGG:ns NR:ns ## COG: FN1354 COG0577 # Protein_GI_number: 19704689 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Fusobacterium nucleatum # 1 434 2 428 428 332 41.0 1e-90 MFFLRMITRSFTRQLRRRLLIALTVCLSATVSVSMLGVVFDVGDKLNAELSTYGSNITVQ PKADAVVSDLYNTESGGATSTSDPTAFLKESDAAKIKTIFWSFNITSFAPQLNIHATVNG TNVPVVGTWFNKNLKISTGETTVVGVEGMRSWWQLDGKWPKDDSDQGVIGKTLASELGVT TGDTITLNKTTASGKKNEQKIKLTGVYDSGDEDNGSLYIASSTAQVLADLPDSVDKIEVK ALTTPENDLARKAAANPAALSQEEWETWYCTAYPSSIAYQIEEVIPGAVAKQVRQVAALQ GNVLQKTQAVMILMTVLSLIAAAVAVANLMVASIGERSGELALLKALGATDAAVSRLMLA ETAAISLLGAIVGALLGSGVAQLIGRVVFGSGITMRPMVFVLVFVLLAVTVLLASASSIR SILNLKPAEVLHGR >gi|316915818|gb|ADCN01000024.1| GENE 20 21041 - 22264 183 407 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 285 407 292 413 413 75 30 9e-13 MTNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGAN LIVTPTESTNADGKAGIDKAMVQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAA QVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAITIGYRASDNASTNGTSSNSSI DQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYS AGASDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVG TTISSIVSQRRNEIGLRKALGASSRAIGTEFYIESSLYGLIGGLIGTAIGYGLASWLCVA VFERSIVFNWWLALISVLFSALVAIVASIPPVHRATRIDPAVVLREE >gi|316915818|gb|ADCN01000024.1| GENE 21 22280 - 23077 1380 265 aa, chain + ## HITS:1 COG:FN1352 KEGG:ns NR:ns ## COG: FN1352 COG1136 # Protein_GI_number: 19704687 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Fusobacterium nucleatum # 1 213 6 218 224 278 61.0 9e-75 MLLELDHISKIYGDLRAVDDLNLTVPEGEWLAIVGSSGSGKTTLMNMIGCMDTPSKGSVK LEGRKLEDLNATQLADVRKNLIGLVFQKFYLVPHLTAVENVMVAQYYHSVVDEKQAMEAL EKVGLKDRAHHLPGQLSGGEQQRVCVARALINDPKLILADEPTGNLDEKNEKIVLDLFRK LHEQGTTIIVVTHDALVASCAQREIMLNHGVLVGEKWNDEDARKAYEAAGGKPASTGAQV EGAQNGETAIGFTDPTKAAKTGGEE >gi|316915818|gb|ADCN01000024.1| GENE 22 23196 - 23759 904 187 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0205 NR:ns ## KEGG: BLJ_0205 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 187 23 209 209 242 97.0 6e-63 MTEKSTLKKSATLAAAGLVVAGALLAGCGESKAAPMDDAYAGNSGETEKSQEEQSQSQSN GSDSSDGSDSSSSHNDPSTTTSDKKDTGNYKDGNYSINGQYGPVGEDSIDVHLTIKDGNV ETVNIIGHPFTTISKNHQDDFAKAINGVVDGKPLKGLKVDKVAGASWTSDAFNKALEVAR QEASIQE >gi|316915818|gb|ADCN01000024.1| GENE 23 23765 - 24355 697 196 aa, chain - ## HITS:1 COG:no KEGG:BL0448 NR:ns ## KEGG: BL0448 # Name: not_defined # Def: TetR-type transcriptional regulator # Organism: B.longum # Pathway: not_defined # 1 196 4 199 199 374 100.0 1e-102 MTDTTATPRGERTREATDRKLMRATLQIAVDRGISGVTIEEVARRSGVAKTTIYRRYHNA DELLHEISAMYLAIPDPDPVPSPTREHFTQLLQRLVDWVRDNDIDVKRVGIVLSSEAEFF QHIVDQVVTPWLEHVGAFLKQGVAQGVFREDVDEKLLLSTIIGSLVAYEAIEGKAMDDDT AWASRMADLLWPALLK >gi|316915818|gb|ADCN01000024.1| GENE 24 24479 - 26641 2094 720 aa, chain - ## HITS:1 COG:CAC2583 KEGG:ns NR:ns ## COG: CAC2583 COG1511 # Protein_GI_number: 15895843 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 671 1 663 709 254 27.0 3e-67 MNTMWKLFTGDIKRLTSNVVSIIIVIGLVMIPGLFTWFNVAACWDPFSNMKNLKFAVANV DEGYRSDLIPVKVTVGDQVVNALRANSQLDWTITSKADAVEGARSGKYYAAIVIPKSFSK DMMTFFSDDVQHAELTYYRNEKKNALAPNLLNEGTDEVAAEINTTFAKTITSAGLEIASS LADQLSKPEAKEQLNTFNANIADFATRLDDTADLLGTYSALTDTAGALLDTSNSLITQVS SAAKQGGKDLASAKQEVTDVAGALGTTADAMSSALDASASSFGAVSDSIDKLYSDANDGA TTVADELDRQATAIGKQTEKYTEIRNTLAGILGNDSSIITAIDRSIARQNRLRQALNTAA TDIRQGNQDAQDQHAQVKNLADQAQNSIANIKSDFSATVKPQIDSLSSTVADASGILSSG ATQLDSTLGDLKGTSDDASDMLSDARTTLDKVSGKLRSAGAELASFNSTLSDALNSGDMG MVKEVLGNDPETLASTLAAPVQLRRKAVFPVANFGSSMAPFYTLLPLWVGALLMVVTLKT TVSRRTRKALGDPRPHRLFLGHYGVFALIALLQSTVSLGGDLLFLRVQAVHPLLFMLSGW LASLVFSFFTYTMVVSFGNVGKAIGVLMLIVQISGANAAYPVQMLPDFIAKVSPLLPLTH AVTMMRAAIAGIYDMDYWRAAGMLLAFVPPLLLLGLLLRKPLVRFNQWYVAQVESTKVLS >gi|316915818|gb|ADCN01000024.1| GENE 25 26638 - 29268 3060 876 aa, chain - ## HITS:1 COG:CAC2583 KEGG:ns NR:ns ## COG: CAC2583 COG1511 # Protein_GI_number: 15895843 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 670 1 663 709 240 27.0 7e-63 MGNIFKVLRRDFLRLFKVPAAWVILFGMVFIPPLYSWYNIVGFWDPYGNTKGITVAIANN DDGTDNALIGKQNLGDQIVKQMRSNDQLGWTFVTEAEAMDQVESGKAYAAIIIPKDFSDD LAGVVTGGKSRPTLEYYVNEKASAIAPKVTDVGASTVDRTVNSTFVSTVSEVLTEVINTV DGKAISTEDTTKAKALTALAEASDDVQHTRSTIAKLTTKLTDTPEQTRTARQALDDARTL GIDTAEGLAGVSTLIGTTQTSLNGFVTSTSEALDQGSSLLSQAAAQANQSVGTVTGTISA ANQQVGGLINTAEDINQANADIIDQLKGLPNADREPLQSAIATLESRNSELAGALGNLDS LNTTIGNASTDTAGLAQHLNTATQTTVREANTARGTIISGAIPQLNTGLNALSSTASTLS TGITSQGSLIDQSKHTLDQLDKAASTTVTALRDTDKALAGVQTKLDTLTTDIKALSISSS LSSLIGTDGKLDAATIADFMLSPTVISEQAVYPVASYGSGMAPLFTTLSLWVGAFVLVVI PKLETDDEGIDDLTPTQGYLGRFLLLATLAAVQGLVTAIGDLVIGIQCASAPVFLLTCVI TSLVYMSVIFALSTTFMHVGKGVCVALVILQVPGASGLYPIEMMPAFFRAIYPLLPFTYS IDAMRETIGGFYDGLWFAYIGKLLVFVVLAFALGLGARPKLANLNRLFAREIKESDMIIG EPVHLPGSEYRVTQAIAALADHDEYRHAIERRAAKFAYRYPRLLLGALIAGFVVPAALII VFALTTSEKIVVMGTWLAWVLIIMGFLMVVEFMRDSIRRQTELGSLSDESIRAMLYGHKA KRRDTSAERHEEADPSAAVTAIIPTIPPTKEGRHAR >gi|316915818|gb|ADCN01000024.1| GENE 26 29623 - 30909 1461 428 aa, chain + ## HITS:1 COG:lin2818 KEGG:ns NR:ns ## COG: lin2818 COG4905 # Protein_GI_number: 16801879 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Listeria innocua # 219 374 4 157 270 66 31.0 1e-10 MVEFKDDGTATTPGKPRENRDAESAVVADLVAVELDDAGLNLNAKRLPILARIYGAVVLL DGLATLPIMVISILYAVREILDGHVHVDAMSLTFILSAIHAVVLVVSAACLIVLGVMLLR NHRRYAARWTYVLMPLTLADGMLSLALTGLGFNLLLPLIQMIILVVISVTADPSLSEERR LQRALRRMDDRDDYESAVAAGMLGRDQSGKGYIALDFFNIFWLFTIASVGGLIVETIYHM ALYNGELQDRAGLLWGPFSPIYGCGAVLVTVCLNRLWKANPFLIFCASAVIGGAFEYCTS WFMEAAFGITAWDYTGRWLSIDGRTSGQFMFFWGLIGVVWIKWLLPRLLALINRIPWKVR YSLTAVCTVLMVIDIAFTLMALDCWYGRMAGQPQDSPVAMWFSERYSDAYMANRFQTMHI DPSKAGRM >gi|316915818|gb|ADCN01000024.1| GENE 27 31088 - 32542 1819 484 aa, chain + ## HITS:1 COG:Cgl1417 KEGG:ns NR:ns ## COG: Cgl1417 COG0362 # Protein_GI_number: 19552667 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Corynebacterium glutamicum # 6 484 8 484 484 607 62.0 1e-173 MAEATANIGVIGLATMGSNLARNLAHHGNTVALFNRHYSRTEKLMNEHGTEGNFVPAETL EEFAASLKRPRTAIIMVKAGAPTDATIAQLEEVFEPGDIIVDGGNSFFKDTIKREKEVRA KGFHFVGCGVSGGEEGALNGPSLMPGGTAESWKTLGPILQSIAAKVNGEPCVTHIGTDGA GHFVKMVHNGIEYADMQVIGEAYDILRRGLGMDAEEIGDVFAEWNKGDLDSYLIEITAEI LHHKDAETGKPFVDVVVDHAGMKGTGTWTVQTGLECGSPVAAIGEAVFARALSSHGELRE DAQKEGLAGPNKTIDLAGEDKAAFVEDVRKALFASKVVAYAQGLNEIQDGAKEYGWDINL SEVARIWRGGCIIRAQFLLDRITEAFRGDNPPASLLFDPYFEKIIGESQDAWRRVIVRAV EAGIPTPVFSSSLAYYDGLRSKRLPTALTQSQRDFFGAHTYGRVDKPGVFHTLWAEEGKP EIEA >gi|316915818|gb|ADCN01000024.1| GENE 28 32846 - 33688 873 280 aa, chain - ## HITS:1 COG:MT1492 KEGG:ns NR:ns ## COG: MT1492 COG0363 # Protein_GI_number: 15840904 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Mycobacterium tuberculosis CDC1551 # 8 280 7 245 247 124 31.0 3e-28 MATRKLIVYPNKDLMIQAGAQRFVLALLDLLAERLPDGTHRTRVDVALSGGSAAQPLGLV LNDPLADAIDWSRVHFWWSDERFVPAYDTDRNALEARRLLLDQLVADGKLPESNIHEMAA DTRSADDIADVMDQADSDDASVRAAADAANDALLDDVASDYERELVNELGPEPVIDLMIL GMGPDGHYASLFPGHDEVKVTDRLTVGVNHSPKMPPLRVSLTAPLIARSRHTWFFAAGAG KAESLAHVFEQPNKPDYPSSYANGVDEFIWFSTEETVTEL >gi|316915818|gb|ADCN01000024.1| GENE 29 33940 - 34965 1184 341 aa, chain - ## HITS:1 COG:MT1493 KEGG:ns NR:ns ## COG: MT1493 COG3429 # Protein_GI_number: 15840905 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-P dehydrogenase subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 332 1 294 303 201 38.0 2e-51 MIIDMPNTRTREIAHKIEQLHEERGESATGRVLTLLIATEDADLEHALEIANSASREHPC RVIAVVPDTNPADQSGESEPNAAEVAAEVSASRDNPAVDLTDGPNDPNDSNLNAQVRFGA DAGAGEIIILRPRGGLINHPDTLVIPLLVPDAPVVAWWPTTPPSNPAKDLMGAMARSRIT DALHSNNPEATIERLRRNWTPEDIDLSWTRLTVWRAMLASMLDQPPHLPITAAKVTGKAD FLPMEMLCAWLRLKLGVPVETEFVPDAQAVTGVYLTREDGVISLERPYEDQALISLPGQT PQEVSVPMRTIEDCLTEELRRIDPDEIYAEVINEGWDLIRH >gi|316915818|gb|ADCN01000024.1| GENE 30 34962 - 36500 2026 512 aa, chain - ## HITS:1 COG:MT1494 KEGG:ns NR:ns ## COG: MT1494 COG0364 # Protein_GI_number: 15840906 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 4 512 7 514 514 738 69.0 0 MSESPNWSNPLRDSRDLRLPRIAGPCSLVIFGVTGDLAQKKLLPAVYDLANRGLLPPSFG LTGFARRDWTQERFIEFVKAAVQAHCRTPFKESTWRNLAAGIRFVQGTFDDPEAFERLSA TVQELDRDRGTQGNHAFYMSVPPRAFPQVAKQLAASGLSRSSEGAWRRVIIEKPFGHDLA SAKELDSVVSEVFDPSSVFRIDHYLGKETVQNLLALRFANAMYEPIWNANYVDHVQITMA EDIGIGGRAGYYDGIGAARDVIQNHLLQLMALTAMEEPVSFTAKDLTAEKTKVLSAVRLP KDLAANTARGQYAKGWQGSHEVVGYLEEKGIDPKSTTETYAAIRLDIDTRRWAGVPFYLR CGKRLGKRVTEIAVVFKRAPHLPFEQTAVRELGKNAIVIRVQPDEGVTMRFGAKVPGGST MEVRDVNMDFSYGRSFTENSPEAYERLILDVLLGDPPLFPTTEEVNLSWEILDPIEQFWS TLGQPQAYRAGTWGPAQADEMLARDGRHWRMP >gi|316915818|gb|ADCN01000024.1| GENE 31 36824 - 38458 1736 544 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 540 9 472 472 477 47.0 1e-134 MSCTTILVGKNASYDGSTIIARDDDSGSGRYDPKRFVAVAPDDQPRHYRSVLSHVEIELP DNPCRYTIAPNVLNNRGILAEAGANEHNVAMSATETIAVNERVLGADPMVELRPAVGEPD STDYQAEQPGGIGEEDIITLVLPYVTTAREGVARLGELLETYGTYESNGVIISDVDEIWY VETIGGHHWIARRVPDDCYATIPNQLGIDDFDLADAFGEQREYLCSADLREFMATHHLDR TMGTSVSSNGRHAHSAGFGTTVALPTRFNPRKAFGTATPKDHIYNTPRAWYMQRRLNPSE DWDSPAARYTPESDDIPWCRVPEDKVSLEDVDFLLSSHFEGTPYDPYGTTGTAESRHRYR PIGVNRTGHMVAIQVRPYVPAANRTVMWVSFGSGPFTAAAPFYANVNDTPAYLRDTTPEV STGNLYWTNRLIAVVVDAHWYETNRFIEGYAEGVRAFGHRLIERTDEQLLARSDAESTDT NAWPLDGGHGDEKDVQGVADVLEAANDEMADYLREHTTKLLNDVLYTSSNLMHNSFAMSD RWAE >gi|316915818|gb|ADCN01000024.1| GENE 32 38532 - 39566 1425 344 aa, chain - ## HITS:1 COG:CAC1488 KEGG:ns NR:ns ## COG: CAC1488 COG0463 # Protein_GI_number: 15894767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Clostridium acetobutylicum # 6 344 2 338 338 261 38.0 1e-69 MASTAKTLTFVIPAYNMESYLDRCVNSLLSASDISDLEVLIVDDGSKDGTLEYARKLERT NPGAVRAIHQENKGHGGAVNTGIAAATGMYVKVVDADDWVDPQAIDTVLATLRAQHDTDE PIDMLVTNYVYDKVAKRHKTVVNFRRVMEAGRVLGWDDLGKFGLAQYIIMHALTFRTQVV RDSGLKLPEHTFYVDFYYSYQPFPWVKRIQYLDVPFYHYFIGREGQSVQTDVMIKRVDQL RLVNRLMTEATPERGTVPEGLYRYMIHFLAIESCVTSTFLILSRDPANYVKKTELWDAID AYSPAIGKDVRSQLMSRALNLPGKTGRWIVRNGYLIAERIVGFN >gi|316915818|gb|ADCN01000024.1| GENE 33 39590 - 40429 792 279 aa, chain - ## HITS:1 COG:MT1047 KEGG:ns NR:ns ## COG: MT1047 COG1309 # Protein_GI_number: 15840447 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 5 202 4 199 202 194 51.0 1e-49 MAHSSRMTSLQRREQLIEVGRSLFAAKGFEAVSVEEIAAHAKVSKPIVYEHFGGKEGLYA VIVDREMRALTGTLTAALDDPTVHPRQIVERTALALLTYIEENAEGFQVLVRDSPSTDPS GSFSSLMGDIAIRVEDILSETFKRQKLSAKGVPYYAQMLVGMTVFTGQYWADRPKVSKEQ LAAYIVDLAWHGLSRLDSKPQLFFEGAKARKEAERRAKRESDSGSPDSDQTSSAQSDPEH ATGEDSGLQNMRSGAQVTQHSAESGGEVLRFEQETEHND >gi|316915818|gb|ADCN01000024.1| GENE 34 40519 - 41796 1729 425 aa, chain + ## HITS:1 COG:ML1628 KEGG:ns NR:ns ## COG: ML1628 COG0552 # Protein_GI_number: 15827857 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Mycobacterium leprae # 93 424 103 429 430 276 52.0 4e-74 MDMNTVLAVLGVIVAAVIVIALSIWLGKSRKRDLDRAMGKVAPDNKKTRDAKAAADARLA AEAEEAKAATAAEPAKSAESAKAEPAPAAQAEPEPAAAPKPESQPASKPTPAKPETPESV GSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDL RTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMVGVNGTGKTT TAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVAFEA SAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPVDEVLLVLDATTGQNGMA QAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPEGFV DGILA >gi|316915818|gb|ADCN01000024.1| GENE 35 42164 - 43459 1796 431 aa, chain + ## HITS:1 COG:Cgl2012 KEGG:ns NR:ns ## COG: Cgl2012 COG0004 # Protein_GI_number: 19553262 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Corynebacterium glutamicum # 6 421 26 450 454 384 55.0 1e-106 MGAIDSGNTAWILTSASLVFLMTPGVAFFYGGMVRAKAVLNMLMLEAAALSVTMIIWTLW GWSIAYAGSDIGGIFGDPASGFLLKDSMVAQDGVFTATGLNGNNYPVSVDVAFQVAFAMI TVGLICGAIAERVKYSTWMIFVALWVTFDYAPMAHMVWNGGLLSADGAISKAIGAAAHDF AGGTVVHINAAVAALIIVLIIGKRKGFGTQPFRPHNVPFVMLGAFLLWFGWFGFNAGSAF AANGTAGYAWVSTSAATAAAMLSWGFTEKIRSGHYTAMGAASGMVAGLVAITPAADVVSP LWAIVMGAIAGVLTCLACGLKFKFGYDDSLDVVGVHGVGGFTGTILIGFFGEGTGLLAGG DWKQLVVQLVIALVAILYSAVITAIIAFALEKTIGWRVTEAQEVGGIDLADQGERAYDFA GTASSVLKEVK >gi|316915818|gb|ADCN01000024.1| GENE 36 43461 - 43799 545 112 aa, chain + ## HITS:1 COG:MT2987 KEGG:ns NR:ns ## COG: MT2987 COG0347 # Protein_GI_number: 15842462 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Mycobacterium tuberculosis CDC1551 # 1 112 1 112 112 135 62.0 1e-32 MKLITAIIQPHKLDDVKEALAAAGVHGLTVSEANGYGRQRGHTEVYRGAEYTVDLIPKIR VEVLSDDADAETLVGVIIKSAGTGTIGDGKVWVAPLDSVARVRTGETGSAAI >gi|316915818|gb|ADCN01000024.1| GENE 37 43892 - 45733 2255 613 aa, chain + ## HITS:1 COG:MT2986 KEGG:ns NR:ns ## COG: MT2986 COG2844 # Protein_GI_number: 15842461 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: UTP:GlnB (protein PII) uridylyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 65 613 57 573 808 244 32.0 4e-64 MKDEAMTSAVDGLKQRFMDMSQPDDDGVYRNGATKRKARTELAMQCLTELWNAACKDVSF PVPDSGIGFAAVGSLARGQLGPSSDLDLVIIYEPRTLNDQQLNELANKLWYPLWDSGLDL DHSIRTRAQCEEVTDHDLPAAMGWLDVKPIAGDTALITTTATSILERWRKAARKRLPELL DSAKARLDEFGRLQYVNQPDIKEARGGLRDSVLVSALAASWLADRPHGIYDEAVERLLDV RDCIHLVAGKDTNLMLTPYQAKVAAMLGLADPTWPENERAAYSIDDLQTLLARIGRRISF SLDSTASRAEHSLTHEKPRFAFFQMFSQRSGGKREAPQFDVVAPGVAKHEGELVLAPGAE PAKDAKLALRMAVAAGEFGLPINPSTLVNLKRCPIHDNQWDDESRELFIRLLACGSNLME VWESIDFVDIPGRWMPEWLGVRNRPSASAAHRYTIDRHMVEVTSRLGRETPSGGRYDDDH FKALLLAGITHDIGKRAFVADHAAEGARHVPVILKRMGYAPDIVDWATVLVREHLTLSEF ATGKDPYDPAVAEELADRLHHDKMLLDMLFDLTRADGSSLGATAGETITKQYGWSKWREQ IVRGMYSAARAAM >gi|316915818|gb|ADCN01000024.1| GENE 38 45767 - 47212 1334 481 aa, chain - ## HITS:1 COG:Cgl1936 KEGG:ns NR:ns ## COG: Cgl1936 COG0534 # Protein_GI_number: 19553186 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Corynebacterium glutamicum # 49 428 16 390 435 148 31.0 2e-35 MRVSVPIDSSDAKATSSGDTTRRDGFGTPHAGANTNVSNGPTDARSTNRRIMALALPTFG QLIAEPTFILIDTAIVGHIGDAALAGLSIGSTIILTAVGLCIFLAYSTTAQVAHLLGAGR RREGLQAGIDGLWLALSIGTVLGLGLFAAAEPLCRALGGQGEVLEQAVTYTRAIVLGAPG MLMVYAANGIFRGLQKVRITLIAAVGGAVVNTVLDVLFVIVLNWGIAGSGVATLVAQWFM GLFLVIPAILWSRADGASLRPRLAGIAAAGGDGLPLFIRTLAIRAAMVTTVACAARMGTA VLAGFQAVNSSWNFAMNMLDSVGIAGQTLVATALGAGSVQQARRLTRATGRAGLVTGAVI GTAFAVVGLFAGHFFSPTPHIQTLIAVGMVTMGIFFPLQGWMMAIDGILIGARDYRYLAV TCTLTAVVYVTLILILANMVTPALTSDLMRTAVLWAAFNVVLMGGRGLSNGLRVRSDAWM R >gi|316915818|gb|ADCN01000024.1| GENE 39 47418 - 48947 2027 509 aa, chain + ## HITS:1 COG:Cgl2923 KEGG:ns NR:ns ## COG: Cgl2923 COG0305 # Protein_GI_number: 19554173 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Corynebacterium glutamicum # 25 501 35 509 510 462 51.0 1e-130 MRATVSFPYDIVHLPRHILYLEAMPEGSEHSYQNGFGGGLDRGDRGDRAGRGGTQTSAAA GDPIFDRVPPHDDDAEMAVLGGMLMSKDAIGEVSQTIDVTDFYQPKHQTIYNAIIDLFSA SQPVDVVLVANQLLADGNLDKVGGADYLHSLVASVPTAANAMYYAEIVHQRAILRNVIAA GTKIAQLGYSAEGSQAEDVVNLAQSEIYEMSMGKVRQDYAAIGPVVHDALDQLDKLQQGL VNKGVPTGFRDIDDVTQGLQPGQMVVVAGRPAMGKSTLGIDFARAAALHHNMTSVVFSLE MSKVELAQRIISAETNIPMAALRRADDITPERWNTLNQFWTKMQNAPLFIDDSPNMSLME IRAKCRRLKQTNDLKLVVIDYLQLMTSGKAVESRQQEVSEFSRALKLLAKELEVPVVALS QLNRGPEMRNDKKPQLSDLRESGSIEQDADVVFLVHRPDFYDKEDRPGEADIIMAKHRNG PTETFHLAFLGATSKFKDMPQDYNANQGV >gi|316915818|gb|ADCN01000024.1| GENE 40 48950 - 50419 1679 489 aa, chain + ## HITS:1 COG:alr2717 KEGG:ns NR:ns ## COG: alr2717 COG0769 # Protein_GI_number: 17230209 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Nostoc sp. PCC 7120 # 25 476 16 441 447 201 33.0 3e-51 MASNVSRDVSQDQSSVVQTCKPWYAFATVAAGRFVRFASRVTKHGGSALPGKVVEKIDPG FLTRTLGQLPLGVVLVSGTNGKTTTTRMVASMLSDLGLKVFTNPTGSNFVRGVVSALLTE VTLGGKLDADIAVLELDEAYAVHFVKQVKPRYALLLNVMRDQLDRFGEIDTTAKLLSHVA AATTGTVVLNREDPRIAALAAKAPAGTTVRYFGLADDLRRYFPSDDDMATTVSVEGVAGP LPSARTPLSPRSELRGASAGTAELPADVTLTAVGDHKATFQMDGQGYATDVKLEGVYNLY NAAAALAVVRAVMQDNAAASKATAAANACAVSADELIAAVSRVTPAFGRGEVIDVNGSPV ELLLVKNPMGFRLSLASFDPANADTMIAINDEYADGRDMSWLWDVDFTSLRASGVAMVSG VRAWDMALRLGYDQVPVADTNTDLEQAVTAFVNANPGTRKHIYCTYTAMLKTRAVLGRIT EVRDAGVGK >gi|316915818|gb|ADCN01000024.1| GENE 41 50522 - 51274 884 250 aa, chain + ## HITS:1 COG:alr2718 KEGG:ns NR:ns ## COG: alr2718 COG3442 # Protein_GI_number: 17230210 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Nostoc sp. PCC 7120 # 10 244 13 255 273 150 40.0 2e-36 MARTIDVVSLYPKDMNIYGDSGNVLTIRRRLELYGYEPVVHQYNQGDDWPDQVDLILGGG GQDTGQKKIIDDFYHRADLLRSLAADGTPMLMICGLYQLFGEYFETVDGTRLDGIGVIGA YTVGQNVRMIGNLVEHSDQFGDVIGYENHSGQTFLREGVQPLGTVNQDGRGNNGEDHTEG ARVHNVIGTYMHGSLLPKNPAISDFLIETAVTRRYGTFDTSDQTPEQAKELARLDQVATN ARKAAAERPR >gi|316915818|gb|ADCN01000024.1| GENE 42 51423 - 51710 418 95 aa, chain + ## HITS:1 COG:no KEGG:BL0428 NR:ns ## KEGG: BL0428 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 95 14 108 108 104 98.0 8e-22 MADFDLLGDGLRKVLLAGIGALATGYEKSSELVDELVKKGEITVEQGKALNTELKRKVSE TVDDAKKAAAEAGDKAAAAADTSAADKPADEGKVE >gi|316915818|gb|ADCN01000024.1| GENE 43 51707 - 53527 2051 606 aa, chain + ## HITS:1 COG:CAC0033 KEGG:ns NR:ns ## COG: CAC0033 COG0661 # Protein_GI_number: 15893331 # Func_class: R General function prediction only # Function: Predicted unusual protein kinase # Organism: Clostridium acetobutylicum # 102 596 34 526 532 293 31.0 1e-78 MTKPTRATPESGSTPLSSRVDPILTPAKAEREAAANRSVDTSDTLKQTVTKATPSVSDET LALFGRRNDFATRYHLTRRGKIKRLGQITRIVEQFDVLHGLTPVKMRLMFEALGPTFVKV GQILSMRSEILPQSFCDELAKLRADADPMPYSTVLDVLAAEYGRPADEVFAHIDPKPLGS ASLAQVHRATLKTGEDVAIKVQRPGVRETMAQDVSIMRSIAKAATKVIRTSQIVDLKGVV EELWDTFESETDFLIEARNLAEFKRFAARFKYMDCPTAYTELCTEHVVVMEYIDGISVSH PGRLVDAGYDLKEIGTKLVDNYATQILDDGFFHADPHPGNIIIRGGQIVLIDLGMTGRLD QRTRAVLKEMIFAVAKQDSPALAEGLLRFAGTEADPEDYPALLADLDVIVKEFGTVDLAE LDIAAFLTALTQMAGRHNIEVPSTVTTVGRALVTLEGLLDEFIPDVNMIEIISDHIATSK SLKNATKDEIKSLGVEGHQALHATLGTMTELKTVARMLTRGQLRVNMELVGSEEPFQLLS DMVNRLTMALIVVGLFVGSSIVYYAGMKPIIFGIPVIGFMGYVVAFALGVWIVIDIYLKG RKTKKR >gi|316915818|gb|ADCN01000024.1| GENE 44 53542 - 54561 1013 339 aa, chain - ## HITS:1 COG:mlr2242 KEGG:ns NR:ns ## COG: mlr2242 COG1609 # Protein_GI_number: 13472066 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 12 339 1 330 331 220 38.0 3e-57 MTQPATGRAARLEDVAALAGVSTATASKALHNKPRISEETKQRVLDAAKQLNYSPNKLAQ SLARGTTGTIGLVTSDLQGRFSTPILIGAENELRAQSTSVLLANARGDAALERQHVEKLL SLKVDGLLIVQCETNPRPTLGHDWGVPLVYVYGPSTDPKDCSVTCDNVDAGRMAINHLIS CGRRHIAIIGGDETYTAATDRTKGALEALSELGIEPAGPIRYGKWDEGWGRAATRLLLDQ GVKFDAVVCQNDQLARGCIDVLKQQGLRIPDDVAVIGHDNWSVLTSSSRPALTSIDNETE TIGRRAARYLVDAIDGNPHHGVDYVPCHLIQRESTLPLD >gi|316915818|gb|ADCN01000024.1| GENE 45 54833 - 55051 95 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227545694|ref|ZP_03975743.1| ## NR: gi|227545694|ref|ZP_03975743.1| hypothetical protein HMPREF0175_0116 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 72 1 72 72 117 97.0 2e-25 MFASFSIYPLNYERRWRTVRLLGFALLAPLPGAGNTAKAFSQYKRTWKFLQKRFRIFAFF LTSNGFETVIRL >gi|316915818|gb|ADCN01000024.1| GENE 46 55050 - 56375 2095 441 aa, chain + ## HITS:1 COG:mlr2244 KEGG:ns NR:ns ## COG: mlr2244 COG1653 # Protein_GI_number: 13472067 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Mesorhizobium loti # 44 423 20 391 415 193 34.0 5e-49 MVSFNKLTRTLAGIAAAALIVPLAACGGSGNGGTATAEGIPAKGTDDGTEITLWTRSPLE RQAKNVVEAYNKSHKNQVKLEIIPNDDMEGKVGGASQTDSLPDILAGDVVRIPYWASEGI FTDITKQIDGLDNKADLQQGHIEAGTVDGAEYTLPFITDVSVMVWNKNLYKEAGLDPEQG PKSIDQFVEQAKKVAALNKDGVAGSYLAGQSGGALVFDLFPSVWADGESVMNKDGSEATL DNDSMKGVLDAYKELANTTNGLGAGSKEETGATWTAPFANGKIGVMPYPNTSTTALFDAE KDGGFEVGVAPIPGTKEGKTSTFLGGDAMGISKDSKHVAQAWNFLYWLMQSDAQKEVFAD QGDTASNIQTLKTAYKDADPRIQTINSVIIDGNGQTPKSPAFNEAFNAAGSPWQLLVQNA VWGSGDLKADNKAVTDVLSAQ >gi|316915818|gb|ADCN01000024.1| GENE 47 56406 - 56489 66 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWLSRLLPSQGRDRLNLFSYYSVIAVI >gi|316915818|gb|ADCN01000024.1| GENE 48 56663 - 57589 1329 308 aa, chain + ## HITS:1 COG:mlr2245 KEGG:ns NR:ns ## COG: mlr2245 COG1175 # Protein_GI_number: 13472068 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Mesorhizobium loti # 1 304 1 303 309 195 38.0 8e-50 MSSVSKSAGAVPVHKSKAKAAQTRRGLLYALPDWLMIIVLFFVPIVLLVVMACSRWSLLG GNRGVNFPDNFVKVFENKLFWPSIWFTLEYTVIVTVFLLVLGLGMAMIVQESSKWNNVLR TCFLLPSATGLASASLLFYALYSPQVGPVTKILSSLGLMQEGGSVLATGQSALWATIIVI VWRFSGYYMLLMMIGLQAIPGDLYEAARMDGAGSWRIFRSITLPLMKPTIVMCLVYCVTG SILAFDQFFILTKGGPNNSTMTVVQLIYNFAFDSKKDLGMAAALSLIVLVALVIINSIQM RGMRDNTK >gi|316915818|gb|ADCN01000024.1| GENE 49 57610 - 58428 1311 272 aa, chain + ## HITS:1 COG:mlr2246 KEGG:ns NR:ns ## COG: mlr2246 COG0395 # Protein_GI_number: 13472069 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Mesorhizobium loti # 17 271 23 285 285 202 42.0 7e-52 MTTPLWKRIIARILEALLAIIFISPLVWVIICSFSPQAGSAQSKGWGVANYLTLFGYQEG LPKYLFNSVIVTLVAVVFSVVVCTLAGYSFSRFDYPGRNLGFMVTLSILMVPYASLLIPL MVWYKQIGLNDSLLGVGLVITLFQLPMSTFIMRNAFDAIPKDMEEAAMVDGCNSLQALFK ILVPVVKPSMVTVGLLAFLEAWNNFMIPLYLSSSSKSTLPLAMVNMRQQTMGVIDYGATE AGVVILLIPCAILFLALQKYYVKGFMAGAVKG >gi|316915818|gb|ADCN01000024.1| GENE 50 58590 - 60566 2925 658 aa, chain + ## HITS:1 COG:ECs4459 KEGG:ns NR:ns ## COG: ECs4459 COG3533 # Protein_GI_number: 15833713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 3 655 11 647 656 475 40.0 1e-133 MNVTITSPFWKRRRDQIVKSVIPYQWGVMNDEIDTTVPDDPAGNQLADNKSHAVANLKVA AGELDDEFHGMVFQDSDVYKWLEEAAYALAYHPDPELKALCDRTVDLIARAQQSDGYLDT PYQIKSGVWADRPRFSLIQQSHEMYVMGHYIEAAVAYHQVTGNEQALEVAKKMADCLDAN FGPEEGKIHGADGHPEIELALAKLYEETGEKRYLTLSQYLIDVRGQDPQFYAKQLKAMNG DNIFHDLGFYKPTYFQAAEPVRDQQTADGHAVRVGYLCTGVAHVGRLLGDQGLIDTAKRF WKNIVTRRMYVTGAIGSTHVGESFTYDYDLPNDTMYGETCASVAMSMFAQQMLDLEPKGE YADVLEKELFNGSIAGISLDGKQYYYVNALETTPDGLDNPDRHHVLSHRVDWFGCACCPA NIARLIASVDRYIYTERDGGKTVLSHQFIANKADFASGLTVEQRSDFPWDSHVEYTVSLP ASAADSSVRFGLRIPGWSLGSYTLTVNGKPAVGSLEDGFVYLVVNAGDTLEIALELDMSV KFVRANSRVRSDAGQVAVMRGPLVYCAEQVDNPGDLWNYRLADGVTGADAAVAFQADLLG GVDTVDLPAVREHADEDDAPLYVDADEPRAGEPATLRLVPYYSWANREIGEMRVFQRR >gi|316915818|gb|ADCN01000024.1| GENE 51 60861 - 61242 327 127 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 127 1 127 368 213 96.0 2e-54 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGRLK Prediction of potential genes in microbial genomes Time: Fri May 13 13:03:24 2011 Seq name: gi|316915773|gb|ADCN01000025.1| Bifidobacterium sp. 12_1_47BFAA cont1.25, whole genome shotgun sequence Length of sequence - 59039 bp Number of predicted genes - 53, with homology - 47 Number of transcription units - 31, operones - 13 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 438 173 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Term 512 - 541 2.8 2 2 Tu 1 . - CDS 718 - 939 83 ## + Prom 659 - 718 4.5 3 3 Tu 1 . + CDS 877 - 6756 8348 ## BL0421 hypothetical protein + Term 6782 - 6820 5.4 + Prom 6782 - 6841 2.4 4 4 Op 1 . + CDS 6861 - 10577 3647 ## BL0420 hypothetical protein 5 4 Op 2 . + CDS 10657 - 11541 953 ## COG0325 Predicted enzyme with a TIM-barrel fold + Term 11551 - 11611 14.5 - Term 11549 - 11587 4.3 6 5 Tu 1 . - CDS 11617 - 12630 1276 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 12671 - 12730 4.0 - Term 12675 - 12720 15.6 7 6 Tu 1 . - CDS 12752 - 13234 546 ## BLJ_0232 hypothetical protein 8 7 Op 1 24/0.000 + CDS 13396 - 13689 495 ## PROTEIN SUPPORTED gi|23465014|ref|NP_695617.1| 30S ribosomal protein S6 9 7 Op 2 21/0.000 + CDS 13746 - 14402 835 ## COG0629 Single-stranded DNA-binding protein 10 7 Op 3 27/0.000 + CDS 14463 - 14711 410 ## PROTEIN SUPPORTED gi|23335650|ref|ZP_00120884.1| COG0238: Ribosomal protein S18 11 7 Op 4 . + CDS 14731 - 15177 719 ## PROTEIN SUPPORTED gi|23335649|ref|ZP_00120883.1| COG0359: Ribosomal protein L9 + Term 15234 - 15276 11.1 + TRNA 15377 - 15450 87.2 # Lys CTT 0 0 + Prom 15377 - 15436 76.8 12 8 Op 1 25/0.000 + CDS 15564 - 15824 309 ## COG1925 Phosphotransferase system, HPr-related proteins 13 8 Op 2 . + CDS 15824 - 17503 1453 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Prom 17558 - 17617 2.5 14 8 Op 3 . + CDS 17737 - 18471 1180 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 18498 - 18538 11.1 - Term 18480 - 18529 9.1 15 9 Tu 1 . - CDS 18555 - 21263 2841 ## COG2217 Cation transport ATPase + Prom 21281 - 21340 2.2 16 10 Op 1 . + CDS 21375 - 21656 361 ## COG1937 Uncharacterized protein conserved in bacteria 17 10 Op 2 . + CDS 21699 - 23123 1521 ## COG1322 Uncharacterized protein conserved in bacteria 18 10 Op 3 . + CDS 23120 - 23749 725 ## BLD_1209 hypothetical protein 19 10 Op 4 . + CDS 23843 - 24691 658 ## COG0566 rRNA methylases 20 11 Op 1 31/0.000 + CDS 24852 - 25157 419 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 21 11 Op 2 21/0.000 + CDS 25161 - 26702 466 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 22 11 Op 3 . + CDS 26728 - 28227 2484 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) + Term 28327 - 28357 3.0 + Prom 28356 - 28415 3.3 23 12 Op 1 . + CDS 28463 - 29527 1214 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins 24 12 Op 2 . + CDS 29538 - 29852 526 ## BLJ_0252 hypothetical protein + Term 29886 - 29936 8.4 + Prom 29854 - 29913 2.3 25 13 Op 1 . + CDS 30026 - 31660 1951 ## BLD_1202 hypothetical protein 26 13 Op 2 . + CDS 31552 - 31905 203 ## BLD_1202 hypothetical protein + Prom 32041 - 32100 2.1 27 14 Tu 1 . + CDS 32124 - 33737 2639 ## COG1232 Protoporphyrinogen oxidase + Term 33750 - 33787 6.5 28 15 Op 1 . + CDS 33867 - 33953 78 ## 29 15 Op 2 . + CDS 33970 - 36012 3017 ## COG1158 Transcription termination factor + Term 36033 - 36087 15.3 30 16 Op 1 . + CDS 36158 - 36265 101 ## 31 16 Op 2 . + CDS 36320 - 36709 474 ## COG1605 Chorismate mutase 32 16 Op 3 . + CDS 36831 - 38882 2227 ## Blon_0274 hypothetical protein + Term 38942 - 38989 15.9 - Term 38929 - 38977 16.1 33 17 Op 1 . - CDS 39108 - 41843 4735 ## COG0525 Valyl-tRNA synthetase - Term 41881 - 41907 -0.6 34 17 Op 2 . - CDS 41987 - 43513 1453 ## COG0747 ABC-type dipeptide transport system, periplasmic component 35 17 Op 3 . - CDS 43575 - 44261 629 ## COG0177 Predicted EndoIII-related endonuclease 36 17 Op 4 . - CDS 44320 - 45120 928 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 45212 - 45271 2.0 37 18 Tu 1 . - CDS 45283 - 45987 988 ## BL0391 hypothetical protein - Prom 46015 - 46074 3.0 38 19 Tu 1 . - CDS 46096 - 46680 655 ## COG1971 Predicted membrane protein - Prom 46768 - 46827 4.1 - Term 46793 - 46836 9.1 39 20 Tu 1 . - CDS 46854 - 47348 929 ## COG0221 Inorganic pyrophosphatase - Prom 47384 - 47443 2.6 - Term 47677 - 47721 11.5 40 21 Tu 1 . - CDS 47785 - 47892 112 ## BDP_1968 alpha-amylase family protein (EC:3.2.1.10) - Prom 48114 - 48173 2.2 41 22 Op 1 . - CDS 48225 - 49463 878 ## BAD_1443 hypothetical protein 42 22 Op 2 . - CDS 49439 - 50095 146 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Prom 50140 - 50199 4.9 43 23 Tu 1 . + CDS 50233 - 50403 213 ## + Term 50510 - 50565 7.1 44 24 Op 1 . + CDS 50598 - 50678 98 ## 45 24 Op 2 . + CDS 50719 - 50904 163 ## BAD_1440 hypothetical protein + Term 50913 - 50958 13.7 46 25 Tu 1 . + CDS 51059 - 51832 352 ## BAD_1439 hypothetical protein 47 26 Tu 1 . - CDS 51776 - 51916 150 ## + Prom 52081 - 52140 1.9 48 27 Tu 1 . + CDS 52230 - 52514 207 ## BAD_1438 cation efflux system protein + Term 52538 - 52585 2.2 49 28 Op 1 . + CDS 52640 - 53179 134 ## BAD_1437 hypothetical protein 50 28 Op 2 . + CDS 53239 - 53883 206 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 53922 - 53969 8.3 51 29 Tu 1 . - CDS 53985 - 56231 2900 ## COG0366 Glycosidases - Prom 56254 - 56313 2.8 + Prom 56192 - 56251 2.9 52 30 Tu 1 . + CDS 56412 - 58466 1152 ## BL0387 hypothetical protein + Prom 58573 - 58632 1.6 53 31 Tu 1 . + CDS 58667 - 59039 220 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915773|gb|ADCN01000025.1| GENE 1 1 - 438 173 145 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 121 199 312 317 71 40 1e-11 RRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGMLT YFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLLGYKTPN EVWDEEMAKLQSKQADPKPAVALTS >gi|316915773|gb|ADCN01000025.1| GENE 2 718 - 939 83 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHSCLDLSAPVFRVFAQATSHLCDQDFFCGCWAAEPVLRQFPLLAIGFTGMSIFSESGVI SAMDITVGAIHRS >gi|316915773|gb|ADCN01000025.1| GENE 3 877 - 6756 8348 1959 aa, chain + ## HITS:1 COG:no KEGG:BL0421 NR:ns ## KEGG: BL0421 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 20 1959 1 1941 1941 3287 96.0 0 MRRSLSEDAKDRGGEVQAGMHQSTRKRWLASIGAVAAVATLATGGAVTAQAADAPVIKNA DVAYPSFKGSDDPMKTAANNTTYNPTASYLQETFDNDVKNLAGTDTDHDFWIDKILTRTG AQPTGKGTNDKGAYSYEGSDGNNYLFTRGRAAYMYTHTPNRLGFVGNTAYWDETNRDGFT VTVNADGANQTLNEDASQRKQTPSYFTSLFQTGGKSLKIKEVKYITYNNVMVANLTVEST QDRDVTLTTASPFAAEGADGATELTGRVNVKNNLTTIYPRFSANNQDGSNWIVSGGKLTS TLSLKANEPQTVKIQLGLIANELPDSTKEYEARYTGDLKDAAASYKDSVTTYNKWWVDNA PYVDTPEDNIDKTVVYRWWLSRFNMLDANMPGNTFQYPTSIEGVLGYNNQIVLTSGMFMM DTKWFRNPEYSYGTWLSAGDTAKKSKAGYYYYHDNPGDPANWNHSYTQYITRAGWDSYKV HGGPSTVAEKLADQGAEDVQGLLASKSEPDNNDNQNNNDNSLIDWSWWSMTGNDADAVSF SEPGRSGQRMDRADGSANMWANANAAAQAYKAAGDTANAEKMRAIADKIQKEVTTELWDK SDNLLKHKWLNDGAFAKYKEINNYYPYSEGLMPTGNEDYNKALRLFEDSNEFPIFPFFTA NQADKAALNFPGSNNFSIINAQPLLQVYSAGIRNYDAAKNGYITNEQFKKLLYWVAFAHY QGGDNNHPDQNEFWNEDNNNVGDVNGDGVINNLDKNLDAAQNGGKITYRSWIHHTQLGTT NWTMVEDVAGMVPREDNKIELNPIEIPGWNYFTVNNLRYHDQDVSIVWDKDGSHYGGPAG YSLYVGGKLAFTSDKLAHLIYDPAAGTVEVKDDSGAQVTVGAEAVKNVKAANQVTFNADQ RVTDLFAKSGTNVDSASKSTTNVAKDADVTGTTYAEKDTNYPAKNAVDGKTVMESFWGTK GSGNKTDTLNIKFKDGKQKIDDIRLYFYQSSSSQTISGYAEPANYKLEYQKDDGTWAPIA DQVRTPNYAGANYNRIQFTPVETTTIRVTFTPQAGMAVGVKEIEAYNTGIKADGTSENQT PQVDAYVSSSTSSGAKLVGTVKDDGLPAEGDVTTTWSQVSGPEGGAAKFVDASAASTTVT FNKEGDYVLKLTASDGEKEGSKEITVHGIPSDGTVNVAPQSSASASYTNGYQPKDNAKKV IDGQVVYANTPNETWNNWGDNTGVEPWLQLKWAGKVPLKKAKVFFWTDGGGVPMVSSWKL QYADADGNWQDVKLADGQSYTVNRNEGNEVKFADTVETNKLRVVFPKGAIVGASEFEAYA IEPVSVDEVNRLVQTGSKADDLKLPSTVSAVYTDGSRRDLAVTWGKVTDAQLAADAVFDV KGTVAGALNGTVAHIAARSDTASQTVGNAQPVEQTVYQNAKSIDLPATVPVKFPNGYNDD RKVTWKDADIKAIDLTKVGDYEVAGTVDDGSSSAAAKLTVHVVADPNGSSTPEPEPEPLV GWIEGKATKTTISPDSEATWSPAEGKLNDGVVVDDTWPTTDDQNVNDKVWGSWGKAKDGM YAQYDFGQSVTVDQSRAQFWANFAETDDSKGGLEVPDAWKIQYLAEDGSWKDVEPTEDYT IVRNSPASRADTDAKGWSAVTFKPVTTKSLRLVLTPHTGSSTFGAAVAEWGVHGIDGTEP EPTPVDKTALKSALDTANGLDANRYTAASWAEFQQSIDAAQAVYDDVNATEEQVAEQVTK LEDGQKVLVALATDVEKSTLQAAIDTAKAEAASGKYTDKSVEALNKAIEAAEGVLKGDES GEVTQAAVQEASASLNKAVKALEEKPAVETVKKESLKASIEQAKKADKSKYTEKAWQALQ SQIAAAQKVYDDKDAKQADVDAAQDALDKAFWATKPEQKPGSQQPGVADGKQNDNKGSLT NTGVAVLGVGILAVLFAAAGVTILKRRQSGAHGSARHSA >gi|316915773|gb|ADCN01000025.1| GENE 4 6861 - 10577 3647 1238 aa, chain + ## HITS:1 COG:no KEGG:BL0420 NR:ns ## KEGG: BL0420 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 1238 1 1238 1238 2013 99.0 0 MSFHVSAQSVRAVAGGLVAAATLLPGLALAPTAMAADSATADNAPSVAGHAYNELPYNNP DVTVTQIDNSSLPSYMRNPIGQNEGIDTPNDLSQNYYSADASALSYDGKLFVFTGHDEAS PDYGSFNMKDWGVYVTDEDGLNRGKWTHYKTIAKADLFSWATGDGAYAGQVVTDDNGTPN DTSDDWFYYYVPVKDKASEAAGQDPFAIGVAKSKSPLGPWKDAIGKPLLTTSQTQIETID PAFFVDEDGTGYLHFGTFGTQLAIKMKKDATTGRTSYTETETKADGTTPNLHTMKDADSN ANGPKGFFEAAWVFRKGDTYYNVYDGGKPGSGTATCVESNYQACIQYSTSDSPLGPWKYQ GVIVPSGSATTMHPSVLQFGDKWYVTYHTGDKEGGTDFRRAVCIDEVDWTADGQMVSTAH PTKAEKTQPSTNVAPYAKVSATFTETPAWKGSVNDGRVLQTAVVPPNHWTNYRSIPQSQS GDSLVYQWDGTVRVNSSKVWFDVDSNALRAPASWKIQYLDADGTWKDVTNPSAYTTTTGK ANPNAVTFDAVTTTALKLDMTGQAVDGGYASVAVAEWEVGSDSSESPAITAPKSVTTATG TAPTLPATVDVKYGNPTVASPVIWRPVDASSYAKVGSFTAYGVVAGVPGEASEQGNVSVN VTVQDGYQPAADTTKPTVTVAVTANAGNSEWLTTAPFATVQATDDTAPIAKLEISADQGK SWTTIAANANAAIATLSQQGDVEVWARATDQAGNVSDVAKAGGKVDSAAPTVTAAADKEE RTLTLTADDGTGSGVASIEYRIGTDGQWATYSKPIAAPSASRATVYYRATDKAGNVSASA KTDIPSDTSVPLTGYIEGDATATDVDGKASGWVKGAAALNDGKIIPDITIANEDVWGTWP NTGEMRLDYEWDREVTIDSSRVQFTSDDGGLGIPASWELQYWDALANNGAGNFVDISDAT YTVTANSPSAGWATGDAKGWSDGTWNTPVKTTKLRMVITSGSASPAVAEWQVHAIDDSTP EPPEPTPIDKTELKQALADSPKADDASKYTETSWAEYAAVLDSAQQVYKAEDATEAAVVD AATQLKQAAKKLVLVATVQDRAALSAQLDAAAAVDRTKWTDESLAVLDSAVATANALTSD GQAAQSDVQAATEAISDAIAGLVEKSTTKPGQGGDKPGSGTDKPNQGNDSNQNKGDADSG KHKKIPDTGAAVLGVGILAVVLAVAGVIILKRRKSGTC >gi|316915773|gb|ADCN01000025.1| GENE 5 10657 - 11541 953 294 aa, chain + ## HITS:1 COG:aq_274 KEGG:ns NR:ns ## COG: aq_274 COG0325 # Protein_GI_number: 15605814 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Aquifex aeolicus # 46 293 9 228 228 139 35.0 5e-33 MCAYETTMVGNLRTGAAMTAYMDHKDLANEVIDQARAQEITDGVHRVLDRIASAESAAGR AAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKRLGERGYSLGVID AAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAEKIARRATMRGIT VGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDDERTIRAGFAH LRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGERAFI >gi|316915773|gb|ADCN01000025.1| GENE 6 11617 - 12630 1276 337 aa, chain - ## HITS:1 COG:Cgl0918 KEGG:ns NR:ns ## COG: Cgl0918 COG0462 # Protein_GI_number: 19552168 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Corynebacterium glutamicum # 11 325 10 323 325 382 58.0 1e-106 MSAILEGTPDKRLVLVTGRAYPELAEKVAECLGTEILETTSYDFANGEMYVRFTEPVRGA DVFVLQCHSGDINKWIMEQLIMIDALKRASAKSITVVAPFLGYSRQDKKHRGREPITARL IFDLFHAAGADRIMTVDLHAAQEQGFFDGPVDHLTAMPVLLDYVRSTLDLGNTTIVSPDA GRIKVSEQWAAKLGNLPLAFIHKQRDITRPNHAEAHGIIGDVDGRDCVVIDDMVDTAGTI CEAVRTLNESGAKSVTLVATHGLLSGPAVERLSHCGAHEIVFMDTVPIPEEKRLPNMTVL SCAPLLAAGIRSVFEEGSVAILLDGLPEDMRPRNIYA >gi|316915773|gb|ADCN01000025.1| GENE 7 12752 - 13234 546 160 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0232 NR:ns ## KEGG: BLJ_0232 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 160 1 160 160 230 100.0 1e-59 MPTVLAKPTQPAAPITPGAAPVAAPGATSTTMNEQQKKIFIIVGAVAGFLVLFGIVYGVL SSAVFSAKSVANSYVAAISSGNYDKANTIADPHVNTNQRALLTSKASSGENTRITNARIS QTSNNADGTVSAQLTYTLEGKEVNGNFTIKDNKVSVEFSE >gi|316915773|gb|ADCN01000025.1| GENE 8 13396 - 13689 495 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23465014|ref|NP_695617.1| 30S ribosomal protein S6 [Bifidobacterium longum NCC2705] # 1 97 1 97 97 195 98 6e-49 MMSAHKYELMFIADPELDERGLKKLTEQYLELVTKEGGSFDEPDYWGRRKLAYEIAGKTE GNYVVVKYTAEPATSDELDRVLNLNESVIRTKILRKG >gi|316915773|gb|ADCN01000025.1| GENE 9 13746 - 14402 835 218 aa, chain + ## HITS:1 COG:ML2684 KEGG:ns NR:ns ## COG: ML2684 COG0629 # Protein_GI_number: 15828449 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Mycobacterium leprae # 1 119 1 119 168 147 62.0 1e-35 MAGETVITIVGNLTADPELRTIGSGATVASFTIASTPRTWNRQTNQFEDGQALFMRCSAW RDLADHCAQSLKKGMRVIATGRLQQRSYQAQDGSQRTVVEMQLDEIGPSLRYATAQVTRQ SSGQGGFQGRSGGFQGGQQSNQGYGNQGGQGGYAGGQGGYNGGYQGGGAGYSQQSAAPAN PSAPAVDPWSNAGASDAGSFSTFGASSDFGGDDSDPEF >gi|316915773|gb|ADCN01000025.1| GENE 10 14463 - 14711 410 82 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23335650|ref|ZP_00120884.1| COG0238: Ribosomal protein S18 [Bifidobacterium longum DJO10A] # 1 82 1 82 82 162 100 4e-39 MSRKRPQPPVKPFKKKPNPLKAAKVTEIDYKDVALLRKFISDRGKIRSRRITGVTVQEQR ELSKAIKNAREMALLPYATSGR >gi|316915773|gb|ADCN01000025.1| GENE 11 14731 - 15177 719 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23335649|ref|ZP_00120883.1| COG0359: Ribosomal protein L9 [Bifidobacterium longum DJO10A] # 1 148 1 148 148 281 100 6e-75 MAETKVILTKTVSNLGHSGDVVDVKSGYARNYLFPQGLAFAWTKGAEAQIVAMKRARLAK AVATREDAVAAKAAIEGTTVEIAAKVSESGKLFGGISNEAIAVALSDKAAVNPKAIEVET IKTTGDFPAKVALHPEITASFFVKVVAE >gi|316915773|gb|ADCN01000025.1| GENE 12 15564 - 15824 309 86 aa, chain + ## HITS:1 COG:BH3074 KEGG:ns NR:ns ## COG: BH3074 COG1925 # Protein_GI_number: 15615636 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Bacillus halodurans # 6 86 5 85 87 72 49.0 2e-13 MPQIFTFTVSDPEGMHARPAGRLVAKAQEYESSITVAYGGKSVDAKRIFGVMGLDVQQGD EVTVRVQGNDEAVAAAEFERFLKEHL >gi|316915773|gb|ADCN01000025.1| GENE 13 15824 - 17503 1453 559 aa, chain + ## HITS:1 COG:CAC3087 KEGG:ns NR:ns ## COG: CAC3087 COG1080 # Protein_GI_number: 15896338 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Clostridium acetobutylicum # 5 556 4 536 539 469 43.0 1e-132 MRTIQGVSVSAGIAIGTVRVLAAVDYAVERRLIDDPQAEMDRFRAARDTAVAQLKQLRDN VAAEFGENKAELFDAHRLMLQDPDYAECVEGLIAQDKVNAEFAVKSAAEQFAAMFAAMDS STMQARAADVKDVSRRVMNVLQGKRDSTAQDGSVQGDAVQNGIVQNGIAQNGESHIIFAE DLAPSDTAQLDRAKVLGLVTAKGSANSHTAILARTMGLPAITGIGDAFDPADDGHVAVID GTSGAVFVDPDEATLTEYRRRKAEAEEHLSLLRKLKGKPTETKSGQRVHLYANISRPSDA AAVLANDAEGIGLFRSEFLYLEREDWPTEEFQFDAYGQVAQEMGDRPVIIRTLDIGADKQ VDYFNLSHEDNPALGYRAIRICLTRPEIFKVQLRALLRASAYGNIAIMLPMITSVQEVRD AKRILEEAKSELRGERIDFNESIQIGVMIETPASVIMADELAAEVDFFSIGTNDLTQYTL ACDRQNPSLERFADPHSPAVLRMIQMTIEAAHRHGIWCGICGELGADLSLTDTFLRLGID ELSVSPTSVLPLRNVIRNH >gi|316915773|gb|ADCN01000025.1| GENE 14 17737 - 18471 1180 244 aa, chain + ## HITS:1 COG:CAC0770 KEGG:ns NR:ns ## COG: CAC0770 COG0580 # Protein_GI_number: 15894057 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Clostridium acetobutylicum # 1 238 1 238 242 262 56.0 5e-70 MDYPLFTKLAAEFFGTAILMIFGNGSVANVELKNTKGHHAGWLNIAMGYGFGVMFPVLMF GSVSGAHINPAMTIAQAVNGLFPWSDVLPYIVAQLLGALLGQLIVYITYYPHYKETEDAE AILGTFCTTDADNQKVNYFLNEMFGTLVLVFGALCCLSLAWGKQDYAAASIVVGFIVWGL VTSMGGPTGPGLNPARDLMPRLLHAILPIPHKGSSRWGEAWIPVVAPIVGAIIGAWLFVF FFAS >gi|316915773|gb|ADCN01000025.1| GENE 15 18555 - 21263 2841 902 aa, chain - ## HITS:1 COG:alr7635 KEGG:ns NR:ns ## COG: alr7635 COG2217 # Protein_GI_number: 17158771 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Nostoc sp. PCC 7120 # 148 760 59 744 753 338 35.0 2e-92 MELSIFSAATALIAAAALTWLVLRFFFGTQKATAGAMDASGERQSATITVKGGYSPAVIS MRTGTPITLTFDRQETGECTSHVVFADLGLDAMLPGNATTDVELPALPAGEYPFACGMNM VHGLLRVEGEESKDGADKDGLRPRADGSAEAEGVSPSDLRVGAPVVDAAEAERREAAERA NEIKALTKLVIVGAVLTLPVFAVTMLHMANPALAPHWMANPWLQAILITPVMFYCGRPIH TVGFPALAHRSPDMNSLVSLGTSAAYLYSLVTCIAPWVFPEGSREPYFESVGVVITLVLV GRLLETKAREGTGKAVQSLIKLRPRTAHKLNATSADNVDGIEWRNPAHFTDTDIDAIATG DLLVVKNGERVPTDGVIVAGEARIDESMITGESKPVSKTAGDPVTGATVLLKGGCVMRAT QVGADTVLSQIAAMVARAQATKAPVQQLADKIARYFVPAVMIIAIWTFAIWRSLGPAPQL AHALVTAVSVLIIACPCALGLATPLSVTVSLGLGATNGVLVTSAKALEQARRIGTVVFDK TGTITRGVVDAAADWDKPSYEQDTVKEGSREAVAALRARGIRTVMLSGDKAEVAGRIARE VGIDTVICEVKPDGKAYWIAKLQRERDEAAAKSAYGTSRTAAQSRTLIAMVGDGINDAPA LAQADLGIAIGTGTDVAMQSADVTLMSGDLRGVIKTINLSNATMRNIRENLGWAFGYNVI GIPVAAGVLYPFTGWLLSPMIAGLAMALSSVCLVLNANRLHGSNINAGVVDGTAGSGSST ADVESAGSAESANAANITGSATSNAPHEPTVIIDDRTTLNQTNHVSDQSNNPTNKENTMD TGMHMHHTAPADGETATDPVCGMTVAVNADAITREYEGKSYYFCGEHCATNFMKAPQVFL EQ >gi|316915773|gb|ADCN01000025.1| GENE 16 21375 - 21656 361 93 aa, chain + ## HITS:1 COG:MT0200 KEGG:ns NR:ns ## COG: MT0200 COG1937 # Protein_GI_number: 15839569 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 2 93 5 96 96 110 67.0 6e-25 MHGYDEDKAKVIARLRRIEGQVRAITQMVEDDKYCIDILTQISASNSALKSVALLLLDDH LNHCVRQASIQGGEVADEKLAEASAAIARLVKS >gi|316915773|gb|ADCN01000025.1| GENE 17 21699 - 23123 1521 474 aa, chain + ## HITS:1 COG:CT825 KEGG:ns NR:ns ## COG: CT825 COG1322 # Protein_GI_number: 15605560 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Chlamydia trachomatis # 92 462 57 408 427 192 30.0 2e-48 MFEQIGTVIIVIVVLVVGAGLGLFAGFVLGRHKGQEMARGVKSEELEEAKTSLENARFEN AELSARNAAAQAQIEGVNQQLAFAKSQLAQAQQAEQIRIQQERERAAAEAERKRQADAQA AEAKRAEQEARLKEQSKVLEALAPVAKNLDTLQNKVTQIEEGRKREMGALGAQLKGLNDQ QARLDKETSSLSAALRNNKVRGAWGEAQLKNIVESAGLLEHVDFDTQVVVTDADGRTLRP DMIVHLPGGKTIPIDAKVPYADYQRACEIPDTASPEDIARRDDLLRSHAKALREHVRALG EKAYWNAFDVAPDFVVAFIPNEALLQAALEADPTLMDDAFSRKVALTSPVTLWAVLKSVA YAWQQQSLTDDAKQLFDLSRELYERFSTLGDYAIKLGTQITKTVSAYNKFASSLERRVLP TARKLQKIEPTKIIEEVPIIESDKGNVSELSAPEVVPADEGDTHLTASGDSLES >gi|316915773|gb|ADCN01000025.1| GENE 18 23120 - 23749 725 209 aa, chain + ## HITS:1 COG:no KEGG:BLD_1209 NR:ns ## KEGG: BLD_1209 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 209 1 209 209 391 99.0 1e-108 MTESGFRPTGTPDLAVAKSHNDFAMLEPREQLATLLKEHVVGRPFSELAAVTFDHRAATV MGHVLIDALEDAGYSIDDFDAVGALTAASVPMVSAMIQAAASRGEDLDGFVMDFVYPSIK GPSIEGRRVVLLDAWLSEKSYVQTSSLVTLRNGNELSLDFGIVEQLGAKVVAIASLVGGG AKDINVVNPSTGDEQTLPFIQVFDESELR >gi|316915773|gb|ADCN01000025.1| GENE 19 23843 - 24691 658 282 aa, chain + ## HITS:1 COG:Cgl2714 KEGG:ns NR:ns ## COG: Cgl2714 COG0566 # Protein_GI_number: 19553964 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Corynebacterium glutamicum # 22 278 1 200 206 200 44.0 2e-51 MHAPNQISLAAKASGEPEFREIGLGPWSETHPGEPRPDDPTSSNYDGRFDSVLLNDGDRR NVLDRYRYWTVAAIKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPH KWNRKGALMTELYQHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAVHAHDVAVDGDN KHLHELLAEIDACDARIKELQAARVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEK ALALADDVVYISQFGSVRSINAGAAAAVAMHAWIAQHAVSGV >gi|316915773|gb|ADCN01000025.1| GENE 20 24852 - 25157 419 101 aa, chain + ## HITS:1 COG:ML1703 KEGG:ns NR:ns ## COG: ML1703 COG0721 # Protein_GI_number: 15827909 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Mycobacterium leprae # 3 101 1 99 99 68 39.0 3e-12 MAMPTFSREEIVHLGDLARIALTDEEITRLQGELNVIADSINKVQEVASDDVPPTANPVP LEAYLRPDVAETPLTQEEALAGGPKTEAGMFVAPRILGSEE >gi|316915773|gb|ADCN01000025.1| GENE 21 25161 - 26702 466 513 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 12 491 8 455 468 184 30 1e-45 MSNETATLVKLSAAEQAAAVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQA DAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAA GMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTD TGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHD KRDSTSIPEGPRPMVAAAREGAKRDLKGMKVGLIKELGGDGFQPGVEARFNEAVDKLKEM GAEVVEVSVPHIGYSLGAYYIIMPSEVSSNLARYDGMRYGLRVMPPTGVPQTAANMMAYT REAGFGDEVKRRIILGTYALSAGYYDAWYGSAQKVRTLIIEDFKKAFEQVDVLVAPTSPS TAFKFGEKMDDPLAMYMNDIATIPANLAGVPAMSIPAGLSDDGLPVGFQFIAPQQRDEVM YKPAAALEAALEDSWNGPIWNDLKTPWLDGLGK >gi|316915773|gb|ADCN01000025.1| GENE 22 26728 - 28227 2484 499 aa, chain + ## HITS:1 COG:Cgl1230 KEGG:ns NR:ns ## COG: Cgl1230 COG0064 # Protein_GI_number: 19552480 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Corynebacterium glutamicum # 5 497 8 500 501 556 57.0 1e-158 MAEKLMKYADATKKYDVVFGLETHVELSTNTKLFCPAHIEFGGEPNTELTPVSLGLPGSL PVINKTAVDYAIKLGLALHCEIAEWSQFARKNYFYPDMPRDYQISQYDKPTNGNGYLDVE LEDGTVFRVPIERAHIEDDAGKNTHVGGADGRIEGADHSLVDYNRAGVPLIEIVTKPIEG AGDRAPEIAGAYVRAIRDIVRALNISHARMEQGNMRADVNVSLRPSPDAPYGTRSETKNV NSFRGIEKTIQYEIRRQAARLDDGKEILQETRHWDEATQTTAGGRLKSDADDYRYFPDPD LVMLHITKEHIEEMKAQMPEMPRERRNRLKSEWGLSDLQMRDILNADALDLIEETVKAGA KAAGARKWWLGELSREANAKGVSLEELPITPADVAEVEKLIASGKLNDKLAKQTVEGVLK GEGTPDEVVKKHDYKIVEDNGAIEAAVDAAFEANPDVVEKLKSGNMKPMGVIIGAVMKAT RGQADAKAVTKVVMGKIKG >gi|316915773|gb|ADCN01000025.1| GENE 23 28463 - 29527 1214 354 aa, chain + ## HITS:1 COG:VCA0947 KEGG:ns NR:ns ## COG: VCA0947 COG1670 # Protein_GI_number: 15601700 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Vibrio cholerae # 124 232 66 168 173 67 32.0 4e-11 MTATNETLSMATEAQLKRDLPQSIVIPPIRGEMVHLRPATVEDLPRLDELDAFYGASKIT GKDAVTERAIVHTWVRRSQAWEAGQAPAESGVGDPESRRTIAWAVLTDADHDDDGQLDAA STDNVIGMIFLIDIDGWSKSARIQIILGREYRGRGYSRDAMPRVMTYGFAPEPAGLGMHR IWVSVPEKNSRSISVYQSLGFVPSGTSRDALWDAENNKYQDLIVMDTLADEYDPIRSLDA FGMHLIEDNPGVKEALSAREHSIAIQQNKPEPEPAQRGEAAAATTSDVQSQAQTPAAAQP VEPQAEHHDDTQKNTRHSLEEESNWPYGQAERKPSKEAWWRTLGRGRKRDTESE >gi|316915773|gb|ADCN01000025.1| GENE 24 29538 - 29852 526 104 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0252 NR:ns ## KEGG: BLJ_0252 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 104 1 104 104 169 100.0 3e-41 MSAEDLDNYETDAELALYREYRDVIKLFTYVVETERRFYLANKVDFNVRSAGQDVYFDVQ LTDAWVWDVYRSSRFVKSVRIVTFKDVNVEEVQKTDIDIPDDIH >gi|316915773|gb|ADCN01000025.1| GENE 25 30026 - 31660 1951 544 aa, chain + ## HITS:1 COG:no KEGG:BLD_1202 NR:ns ## KEGG: BLD_1202 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 522 6 527 622 941 100.0 0 MQQGLKGSIAGVVAAATLLAGGILTVPHAMALEADGQYYSSKQPYVAPSEATTASYSQAP EGYETVYTESMARHGSRGLSSYKYDALLMKMAEAAEADNGFKSDAIKSEFMKNLKAITAA NVENGYGMLTGQGADQHQGIGARAYERNKTLFDNAAKDGGKIAYQSSGEARATESGENFA RGFNAASNNKLANSTVTPADPAGTGEAAAFDKTPNTLYFHKSENPDGTEKTGEAKQRADD YQNFVENDAIIAGAEQTIAENEDVKTASHDLLSQIFTDDFLAKLADGTYAWYNTVDGTKG GEANCAPGADPSKDADACGAAKKKIASEYDAAMDLYNLYIIAADMENENTGSHTFDFNQY FQGEQADDAKLFAWALDAEDFYEKGPSYAGQDETYTIAQPLLDDFFSSIDERVNGGSTVA TFRFAHAETMMPFAALLGLPGSIQQAAASTTDVYTYANNEWRGESVTPMAANVQWDVAVK SGNDPKTGRAYTPLVRMLYNEQEIAFRSECTPIADGSTWYKLPMVPRGTSSLSLKVAWPP TTKP >gi|316915773|gb|ADCN01000025.1| GENE 26 31552 - 31905 203 117 aa, chain + ## HITS:1 COG:no KEGG:BLD_1202 NR:ns ## KEGG: BLD_1202 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 15 117 520 622 622 198 100.0 4e-50 MHADCRWFHVVQAPDGSTWYKLTELKSCLASDHQTLGDDAHLTDDSTTQPGTGPNTGEGT STTPNNNGAGTHQPSNTQANGTENELSRTGVAVTGVAGIMMLLALAGISLNLWKVRR >gi|316915773|gb|ADCN01000025.1| GENE 27 32124 - 33737 2639 537 aa, chain + ## HITS:1 COG:CC1101 KEGG:ns NR:ns ## COG: CC1101 COG1232 # Protein_GI_number: 16125353 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Caulobacter vibrioides # 1 535 6 482 504 282 35.0 1e-75 MTDKQSVVIIGGGPAGLTAAWELIKDGGADKYDVTVLEGTREFGGISRTVKHNGNRMDIG GHRFFSKDERIMDWWKTVLPLQGAPSYDDKKLGRDHDMEPGGPDPETEDKVMLKRHRVSR IFWNRHFFDYPISLSPNTLKAMGFKLTMVAGFSYLKSMFHKLPEDNLENFYINRFGRKLY SMFFEGYTEKLWGRHPSQISADWGAQRVKGLSIMGVLKNAFQKLLPKKRSNAEVETSLIE EFWYPKYGPGQLWETVESNCEAAGVKVLTDARVVEVRQTDGAVSSVVYEDSEGNRTELSG DQFISSMPVKDLVNAIDAAGADPEAVDSKPAPADMTEVANGLPYRDFVTVGLLVKHLKLK NTTSIPTLGNPPIVPDCWIYVQDPGYKVGRLQIFNNWSPYLVKDVDDTVWIGLEYFCEEG DSFWNMSEEDVTKFAISELTRMRVINGPDEVIDSHRERVRKAYPAYFDTYEHMDELIEYL DGFGNLYCVGRNGQHRYNNMDHSMATAMEAVGNIKTGKTSKKNVWSVNTEKSYHEEK >gi|316915773|gb|ADCN01000025.1| GENE 28 33867 - 33953 78 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGATAIITLNAWIGMGLFGMERATSGK >gi|316915773|gb|ADCN01000025.1| GENE 29 33970 - 36012 3017 680 aa, chain + ## HITS:1 COG:ML1132_2 KEGG:ns NR:ns ## COG: ML1132_2 COG1158 # Protein_GI_number: 15827563 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Mycobacterium leprae # 296 667 58 430 441 478 68.0 1e-134 MKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAAKTAKVVKAP QSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRTRRKAADDAA SEPRAARRRRDDDQPDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERHEDVEVPLIR RVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDDHEFVRRNRR DRSDRNDRDTRNDRSDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSRREEPQEDLV PVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGDRRNQ RQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGRIMDIVSPIG KGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDMERTVQGEVIS STFDRPASDHTTVAELAVERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGV DAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSREL ADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLVPRLKKTATN RDFLAAIVQQANTGNAVNGN >gi|316915773|gb|ADCN01000025.1| GENE 30 36158 - 36265 101 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKEASLGSIVLGVGSGAAMFGDADASHILTGDYDI >gi|316915773|gb|ADCN01000025.1| GENE 31 36320 - 36709 474 129 aa, chain + ## HITS:1 COG:AGc4890A KEGG:ns NR:ns ## COG: AGc4890A COG1605 # Protein_GI_number: 15889952 # Func_class: E Amino acid transport and metabolism # Function: Chorismate mutase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 120 8 99 105 89 51.0 1e-18 MSETSSDWQRTTIDSAQAAAHPETAQAVARIKALRQTIDNIDSAVIALLAERFKATSQVG VLKANAGFAPEDTKREDYQIERLHRIAIDAGLDPEIAEMYREFVVTEAKKRHQRIADAGG DPGVLDVFA >gi|316915773|gb|ADCN01000025.1| GENE 32 36831 - 38882 2227 683 aa, chain + ## HITS:1 COG:no KEGG:Blon_0274 NR:ns ## KEGG: Blon_0274 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 683 1 680 680 909 96.0 0 MRCGAALVSCALCVASILGGAWMSRPTPVDYGPVLATASDMYAVTDAEGEPVRWYVVGKG GAGNGASADSGNSGSTDTDSANSNSGTSKVSRIPASAATLPWKVSVTYSLDGPNVEANEV AGASGLIGVYIDIKPQTKEANRTIPVVAFTVPTQVADDVSADNSITVTTQGSNTVVAAAG KAATGLEFSCYMNAKDFSMSSVALAVLPSNSSSPAVGANPDAANAANAAAQPAADTDVAQ LTASAATLVDSLTDAGSGEQQQLIEQLQTLRDNERALNKSVVAERETAHKRTFEDYMAAY VGSYTTHLSGSIGTSTQLPALMGTAGELSGDTPLAQAVLDLANAVNNVSAAHQHAGAVDA LDEVIRRIQQQGTTGLVDDLIAEASEEATQGSKQYADGQSQLSAAMIPYSMKYTDVYTAN LSALTGGTSSGATAYESQAIAETNGSDELADAQSKVDAAMSTLATASEHTGKATALRQIV LRFSDQFEGGASSASGSDGDGSSGDVSSDPVTEAQALTGLVDSQSQSFYGKTRVAQAKRK ADAARKQAKAAQQQQSQHSKASLVDDTMSMSAGDVMNYAGGLTSAIGGGDKSDSSKSAGS GTNDSAKSSDTGDSGNNLDTAPVLFGFGAGGTLFKHDMNALINETVKISDAGTLLAQAVA QLDSPNTQQKTAETRYLIVIPTV >gi|316915773|gb|ADCN01000025.1| GENE 33 39108 - 41843 4735 911 aa, chain - ## HITS:1 COG:RC1053 KEGG:ns NR:ns ## COG: RC1053 COG0525 # Protein_GI_number: 15892976 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Rickettsia conorii # 25 842 14 770 812 555 38.0 1e-157 MTEGKSIINANLTPLPDKVGVDGLEDKWRTVWDEDGTYKFRNTRDRKAVYSIDTPPPTVS GSLHVGHVFSYTHTDVIARYKRMRGYDVFYPMGWDDNGLPTERRVQNYYGVRVDVSLPYD PDFKPPFEGTDGKKIDAKDQVPISRKNFIELCERLTAQDEKLFEALWRKLGLSIDWSQTY HTIGQHPQRVAQKAFLRNLARGEAYQQDAPGLWDVTFQTAVAQAELESREYPGFYHKVAF RFEDGTPIYIETTRPELLAACTSLIANPNDERYKQYFGQYVYSPLFKVKVPILAHPAAEM DKGAGIAMCCTFGDVTDVEWWRDLKLPTRPIIQRNGRIVMDTPDWIEDPAGREVFAETAG KTTFSARKIIVDKLRESGDLDGEPTPTKRMTNFYEKGDKPLEIVTSRQWYLKNGGTDAKL NAELIERGKELEFHPDFMRVRYENWVHGLNGDWLISRQRFFGVPFPLWYPVNASGEPDYD HPITPSEDRLPIDPTIDVPEGYDESQRDVPGGFTAEKDIMDTWATSSLTPQIVTHWAEPD EASKALFASTFPMDLRPQGQDIIRTWLFSTVDRAHLENKCLPWAHATLSGWILDPDHKKM SKSKGNVVVPNEPIEKFGADAVRYWAAAARLGLDATYDIGQMKIGRRLAIKLLNATKFAL AIGREDENHHVGAAAEAAWNPADVTEPLDRAAMAKLALVVRQATEALESYEHSKALEVIE SYFWQFCDDYIELVKNRAYGTPDEHGNVPSEKAVKSARTALGLGLDAFARLLAPYLPYAT EEVWSWMHAGSGSVHRAAWPVVDPYVEAATGASPELLTWAGKAVEQLRKIKSEAKVSMKT PILSVALSAASEGVEAIHAALGDIAQAGRVVGKFDLVAKHAEESAAEGTPETEVAVEASE LGEPPAKKPKH >gi|316915773|gb|ADCN01000025.1| GENE 34 41987 - 43513 1453 508 aa, chain - ## HITS:1 COG:mlr1186 KEGG:ns NR:ns ## COG: mlr1186 COG0747 # Protein_GI_number: 13471266 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Mesorhizobium loti # 47 490 32 478 497 133 28.0 1e-30 MQHSKRDNTWSKWGIFLGVAVALGALVVVGWTFMQNRFQPGSSLDADVTIGIDDMPQSLD IRSDSSAAAERLLVDNVYETLVTVDQDNKLQPGLATSWKTSDDGLTVTLTLQSGVTFSNG HTLDASDAVWSLQQNVTNKVADVDELGDLASVANPNATTVVITLAKPNPTLLRALSGRLG IVYDSESSSADYQRKAIGSGPFTVADFQPGHSLKLARSDTYHGTKAASNVVEFMQYSDAD ALSKALTDGSLDMAAPVSASTATGLNGKDGLTVKEGATTDKVLLAYNDGTDSLLSDEQAR KAFRYQIDAAGIASAQPDAAGALGGPISLLEPGYEDLTGLYPHDENQAGQMFSYFGAQYL TTVNLVVPEEYRSLAETIKQQIERQPRPTVNLEVLSDEDYAKRIKDGKWELTVMSMDGTD DAGIFADPDSMFHYDHTEAQQAYADARAATNDADYEARMKAYARLISEDAASDWLYTRKC FTVASTKVSGYPTSMINRRMPLAGLTVK >gi|316915773|gb|ADCN01000025.1| GENE 35 43575 - 44261 629 228 aa, chain - ## HITS:1 COG:Rv3674c KEGG:ns NR:ns ## COG: Rv3674c COG0177 # Protein_GI_number: 15610810 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Mycobacterium tuberculosis H37Rv # 19 218 5 199 226 219 56.0 4e-57 MRETKSARLTRMHDEYDILRQVIPAPACALHFSNPLELLIATVLSAQTTDKRVNTVTPEL FATYPTARDLAAANPAQVEDIIHPLGFYRSKTQHLIGLATALDERFGGVVPRTMDELTSL PGVGRKTANVVLGNAFDIPGFPVDTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPP EEWTNLSHRLILFGRATCHARTPDCANCPLSDTCPSYAPPAGKSTSKR >gi|316915773|gb|ADCN01000025.1| GENE 36 44320 - 45120 928 266 aa, chain - ## HITS:1 COG:MT0840 KEGG:ns NR:ns ## COG: MT0840 COG0745 # Protein_GI_number: 15840231 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Mycobacterium tuberculosis CDC1551 # 13 229 26 231 268 227 52.0 1e-59 MTDLTLMSFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTL CRLIHASGLSTPIVLVLTEGGFTVVNSQWGIADVVVATASPAEVEGRLRLVSERGNAPAA AAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPIDLAYKEFELLKYLVQHPGRVF TRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETA AAQQAAKASSAAIDTDDDTPDLNTVA >gi|316915773|gb|ADCN01000025.1| GENE 37 45283 - 45987 988 234 aa, chain - ## HITS:1 COG:no KEGG:BL0391 NR:ns ## KEGG: BL0391 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 234 11 244 244 372 99.0 1e-102 MTEITQEGWKNKALSMLLAQLTSYVLLIAATVIPSPGTVPIIPLIIAALTLAAFVVFWPF RGSMLDRIVTLVFGAISLIFVIVPFPTGKVPPDQTAADGSVLPWYSWALAMGLLLVVLVV FSFGRQMAREKREHLIRALSHAVTSGVAALAVAGWCFLPDLGAMLAKGTVAGTVALIILI VLGLALAVASTLWVRDADPDPDIRYPWIGTGLMPVMLMGVTIAATALVLGRVIG >gi|316915773|gb|ADCN01000025.1| GENE 38 46096 - 46680 655 194 aa, chain - ## HITS:1 COG:Cj0167c KEGG:ns NR:ns ## COG: Cj0167c COG1971 # Protein_GI_number: 15791554 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Campylobacter jejuni # 8 189 6 184 187 115 42.0 5e-26 MIPMIIQILLISVSVAMDAFAVSIGKGLTVSRVRVQDAAKSALWLGGFQMLFPILGYFAA STFSKYVTQFDHWIIFALLVFIGGNMVHEAFEEDEENSKETAQFDWKHMLPLAVACSIDA FAVGVSLTFMFTKAHMAFAILSIGVVTGLFSAAGLYIGRAFGSRWQEPAQIAGGVVLILL GVKVLLEHLGVIAF >gi|316915773|gb|ADCN01000025.1| GENE 39 46854 - 47348 929 164 aa, chain - ## HITS:1 COG:ML0210 KEGG:ns NR:ns ## COG: ML0210 COG0221 # Protein_GI_number: 15827013 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Mycobacterium leprae # 5 163 3 161 162 179 59.0 2e-45 MAETFNVVVEIPRGSKNKYEVDHETGRVFLDRTLFTSMGYPDDYGYIDGTLGEDGDPLDA LVMIPNSVFPGCVVECRAVGLYHMVDEAGGDDKVLCVPADVRFDDIKDIDDVNEYHKAEI KHFFEQYKALEPGKEVLPGDYWTGADAAEKEIIAARERLANEGK >gi|316915773|gb|ADCN01000025.1| GENE 40 47785 - 47892 112 35 aa, chain - ## HITS:1 COG:no KEGG:BDP_1968 NR:ns ## KEGG: BDP_1968 # Name: not_defined # Def: alpha-amylase family protein (EC:3.2.1.10) # Organism: B.dentium # Pathway: not_defined # 1 35 697 731 731 73 91.0 3e-12 MRDELTGREFDWGWDNYVSLAPWADVAHVLTVVED >gi|316915773|gb|ADCN01000025.1| GENE 41 48225 - 49463 878 412 aa, chain - ## HITS:1 COG:no KEGG:BAD_1443 NR:ns ## KEGG: BAD_1443 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 18 412 1 395 395 759 99.0 0 MQKIRHFIKSIKELCYDMNRSLPKKFSLYIAFPLFLLYSLELISGYYHQFTVFSIVFICI ELCSIVLFIQFPYTGSIIIIILWITAVSIKPVLPYSFVFAGLSATVILGYINIPSAISIL LFATSILFFQPHTDKSALVMFDTTFLTLAIIGCAIRLHQNQKRAINQLTIHKWKEEIAEE LHDIVCNDLTYAIHQINLLKNENPNSQRNPEIAENMALLDIRDSLIEALSCSRTAITTLR KDDGSCSTSEIDITTINIIELLEQERMKLAKAGFDGIIAADGSDNLTTTHGKSIIIKQLI KEIFGNILKHADPSHGYVITAYVNASTLHISASDTPLLKNSTSKHPQDNATNNQFGNGTG IRSYQTRLAALDGELSASASDDQWTLEAAIPLMDTDHTDGHHSAGRMRIRLD >gi|316915773|gb|ADCN01000025.1| GENE 42 49439 - 50095 146 218 aa, chain - ## HITS:1 COG:DR0987 KEGG:ns NR:ns ## COG: DR0987 COG2197 # Protein_GI_number: 15806010 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Deinococcus radiodurans # 5 209 26 225 239 66 25.0 3e-11 MTEGISIAVLDNDSWSLRAIARWIDGSSPLYHVIWQTTSAAEAIHRCIYTNDKPNVLLLD MALNDATGISVCTQIRKRTADIGIIGITAYDPERYKTDLALAGGQALIAKENLAHVCNKV LPIVAQGKSAEPNSFPTAKQAHDILAEQPSSFSQIKQLSPRELQVLRLYTQNNNTSEIAS QLGISSNTVFSYIHRVSKKIGTKNRSEIIRLCKKYDIL >gi|316915773|gb|ADCN01000025.1| GENE 43 50233 - 50403 213 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MREIALGMMAVMLMGGNVDNVSVFNSWDGRMSYLSVSRVVNCPSGIPKWICSLWNA >gi|316915773|gb|ADCN01000025.1| GENE 44 50598 - 50678 98 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MERISYRLEYGRYAKSSKTRCFKWLY >gi|316915773|gb|ADCN01000025.1| GENE 45 50719 - 50904 163 61 aa, chain + ## HITS:1 COG:no KEGG:BAD_1440 NR:ns ## KEGG: BAD_1440 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 61 76 136 136 114 100.0 1e-24 MLGYANEDVESGVVTLTSGQEGWVTNQVYKNFGKKQVHMRLQAAHAYSGATETSGKWSPD N >gi|316915773|gb|ADCN01000025.1| GENE 46 51059 - 51832 352 257 aa, chain + ## HITS:1 COG:no KEGG:BAD_1439 NR:ns ## KEGG: BAD_1439 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 257 28 284 284 442 100.0 1e-123 MLVAVQYLTTYRASYVTPSSESTLLRDVMLFSQYGTGGGMYLLLLPFLSALLGGSVVSLE RHAGRLPMVVIREGRGRFVTTAMSSGFVLGGVGGIMPMIANLSIAAMRNPHLNFIDGVSA DARGRVYSSKYILISSDSWIYPLYEFNQVLCILCVVLLIFVIAGLFSTVAVGVSFFMQRK YTEVLVPFVLSLVWWMLPSLTGGKIPDQWSHVIFLDFAPGADHSVRWQNYVGIVLSTALL LALSTVLACVERYRDAL >gi|316915773|gb|ADCN01000025.1| GENE 47 51776 - 51916 150 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPYANPTTITNMALILIPMVEYRTEAKPSQSITIPFHTRQYGRQCK >gi|316915773|gb|ADCN01000025.1| GENE 48 52230 - 52514 207 94 aa, chain + ## HITS:1 COG:no KEGG:BAD_1438 NR:ns ## KEGG: BAD_1438 # Name: not_defined # Def: cation efflux system protein # Organism: B.adolescentis # Pathway: not_defined # 1 94 137 230 230 172 100.0 4e-42 MMNISIGLVQLLLSYMGLVMEHVAAVLIALFAIAQWLLTPLVDGAARMMFYFWYPISPDW SDIVICQVIPCFGFCSLLIMACIVAFNSRDRLKN >gi|316915773|gb|ADCN01000025.1| GENE 49 52640 - 53179 134 179 aa, chain + ## HITS:1 COG:no KEGG:BAD_1437 NR:ns ## KEGG: BAD_1437 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 1 179 43 221 221 286 100.0 2e-76 MGMFRIAPAMSHPDLTLNMYPLLFMVGGIALALEQCSEYLMIPDYLVYVRSRRGWSHFCR YCALLLCYCALFTGVQLIIAVMIVSRDRQECLLMTAICAALTLAVLMLIINIGYLLNCRV MGYATAAALYTALLSLDGVRRWLISSWIGILPCWVPVLTVLFLALAMVNLIVFEHVEMY >gi|316915773|gb|ADCN01000025.1| GENE 50 53239 - 53883 206 214 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 5 207 7 214 311 84 27 2e-15 MYVKIRHLTKTIKRKVVLRDVNAEFERGNIYGIVGPNGSGKTMLLRAICGFIRPDNGTVS IDGKPVEFNKKLPESVGVIIENPGFIPSQSAMENLRYLADINHAFDQDEIMRLLDLFGLR NHAQEQVRSYSLGMRQKLAIVQALMEHQPLILLDEPTNGLDEHSVSVFLEEMKRQRDMGR TVLIASHHSDELSQIADHLYLMSDGVLSSSDADC >gi|316915773|gb|ADCN01000025.1| GENE 51 53985 - 56231 2900 748 aa, chain - ## HITS:1 COG:Cgl1197 KEGG:ns NR:ns ## COG: Cgl1197 COG0366 # Protein_GI_number: 19552447 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Corynebacterium glutamicum # 72 747 3 656 675 472 40.0 1e-132 MAAVQHRATTRTSNTDNSTTKTKSKATSARKSPATKRKRVSAETARAAAALKGLAVEAPA PSIEANEPGQFGRINVMDITPAEERGIFPARVELGEPFEMTAQVFIEGRTKVGATAIVRN PRGKETMRRAMTCVNPGLDRWTVMVKCGEHSDLKPWEDGYAAVKRQLGEWTVTIEGWEDA YVSWLHDARIKVRVMDDVDNALNSGAELLARWAETPDTGLTARDRKTLEKAAETMADQTL SAEDRLAAGDNPTIAALHETHPLRDGISPSQPQRFKVERPKSSFAAWYQFFPRSEGATID PNTGKIIQGTLKTSMAGLERAAAEGFDIVYLPPVFPIGVTNRKGRNNTLVAGPDDPGSPF GIGSELGGHDTVDPLLGTMDDFKALCQRAHELGLEIALDFALQCSPDHPWVKAHPNWFRH KPDGSIAFAENPPKKYQDIYPIDFNADMPGIEKEVERIMNLWIEAGVTIFRIDNPHTKPV RFWQDVIAAVTKKHPEILFLAEAFTRPGMMRALSYAGFTQSHCYFPWRNTKEELEEYLEE TNGDGGFYQHNTFWPSTPDIMTAYLRDNGIAGHAVRAVLAAMGSPSWGIYNGYELIENKQ RPGFEEQIDNEKYEVKVRDWDEADKYGISELLTSLNKIRSEHPACRSYHNLHVLPSDDAG VVAFLRQTPAELTGTGKPDTVIVVVNLDGHNAHQSIVHIELPDFGFATDKPLKVRDELTG REFEWSWDNYVSLAPWADVAHVLTVVED >gi|316915773|gb|ADCN01000025.1| GENE 52 56412 - 58466 1152 684 aa, chain + ## HITS:1 COG:no KEGG:BL0387 NR:ns ## KEGG: BL0387 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 683 1 683 684 1314 99.0 0 MIVAYPHTVQYAGKRTRKGRMMITTWRQRGMAIVAMLTGLIIMVGVVFGSANTAYAATLT PADERYHVAFPYNDMEYYVGVAGLDASGNKYYCIEAGKLSDYVIGPTTVLASDENARRMA WILDRYRDTDAATHAAIGIIVQDHFGRDRDEWARQMAVIQGRYPEIVAKAARIWDQSAGK TPAGTTVERTDAEALRSGSISVKVVNRAGDAIAGVPFTVTLQGAARFVQGGNTFSGVSTS AGSSIAWEATGAGEVTANTTYEYGRMHVMDSTQDMLAFDSMASTGGASTTFRVRKDFVPA VSTKVSEKVLDVASPVFDDVTSGVADADSYWVPDLELQARGYYFDGLDTGDVGNVITPNA QESADAFLARLATLGYEPVAYGKASFTGVGQQARVQAMTKPDDGAAYRTKQNSGFGTWVW VFRRSEQSKQAQEYLIGDWISPFMEATESNTSRRKLEVMSTVTEHSADIGAELSDTITVS GFPADHGQYAGNEEYEFAADRPYATVSVWWSGDPDNPSNDEAYKPSGGEVPTEDDSHRLL ATWEIPAMNGTFKIGAGALDAHGAPMYLTAERPGWYVFVWRFEGDDRVSPASSRYDDAWE RVRVLPPCESEKPCEPEKPETPPAPAEATTPNPRPSLPVTGGDVSLASVLAVSALAIGAI LSIVVRWRRRYDRFKHWTMRWPIC >gi|316915773|gb|ADCN01000025.1| GENE 53 58667 - 59039 220 124 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 109 1 109 358 189 93.0 4e-47 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAECWAAAGRRCSS AAGC Prediction of potential genes in microbial genomes Time: Fri May 13 13:05:21 2011 Seq name: gi|316915767|gb|ADCN01000026.1| Bifidobacterium sp. 12_1_47BFAA cont1.26, whole genome shotgun sequence Length of sequence - 3775 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 492 298 ## Blon_0983 phage integrase family protein 2 2 Op 1 . - CDS 658 - 804 89 ## gi|224283369|ref|ZP_03646691.1| hypothetical protein BbifN4_06024 3 2 Op 2 . - CDS 868 - 1836 918 ## BLD_0320 hypothetical protein - Term 2043 - 2080 -0.6 4 3 Op 1 9/0.000 - CDS 2220 - 2777 568 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 5 3 Op 2 . - CDS 2726 - 3154 404 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 3195 - 3254 1.5 6 4 Tu 1 . + CDS 3078 - 3317 93 ## 7 5 Tu 1 . + CDS 3435 - 3774 276 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316915767|gb|ADCN01000026.1| GENE 1 3 - 492 298 163 aa, chain - ## HITS:1 COG:no KEGG:Blon_0983 NR:ns ## KEGG: Blon_0983 # Name: not_defined # Def: phage integrase family protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 5 163 18 176 447 148 48.0 8e-35 MIVRRDADGNPTSFQARYVNPLDPPKKVGRNFGLEYETEAYRWLDEERYLVTLHNKGIRQ WVHPSQRGANTMPTFREYSKDYFDKYRKPDGSKLSGRSNRCNGIVLRRLNETFGDTPLDR ITRQMVDEWYANARDTLTAWTFEQAARTLKRIMLAAANEQADG >gi|316915767|gb|ADCN01000026.1| GENE 2 658 - 804 89 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224283369|ref|ZP_03646691.1| ## NR: gi|224283369|ref|ZP_03646691.1| hypothetical protein BbifN4_06024 [Bifidobacterium bifidum NCIMB 41171] # 4 47 1 44 45 75 95.0 8e-13 MERMTTIIMNTSDDNRGQLFLALFQGFPFLGNLPITLVFHEAPTGTQE >gi|316915767|gb|ADCN01000026.1| GENE 3 868 - 1836 918 322 aa, chain - ## HITS:1 COG:no KEGG:BLD_0320 NR:ns ## KEGG: BLD_0320 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 322 1 322 322 233 99.0 1e-59 MKKFFEGLSLSSIVAGTLAAVTSFLLASKIGIAGSVIGAAASYIVSAVATKIYQNILTAS GEKLQSASSSGNDDDTTDNKSDKAAESESDTTMTGMVNTVSTARKPREVVSNRANGRTYS VNELRKARSHNSKRTAIIVTLVSGLLAVAVTAGIVMLVTQGRGTDHIITPSTTPTQTDTK TQTDTSNQNNGLPQPGITDGSNDSNTKDSTSGSSNDGTDSSTFGSTGTDSSTDSNTNGST DGSTGTDSSTNSGTTGGSTGSGTTGGTTGTGNGSTGSGSGSANGSGSSSSSTGGSSSSNS GNSGSSGSSTGSSSGTGIKFIG >gi|316915767|gb|ADCN01000026.1| GENE 4 2220 - 2777 568 185 aa, chain - ## HITS:1 COG:PA3605 KEGG:ns NR:ns ## COG: PA3605 COG0697 # Protein_GI_number: 15598801 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pseudomonas aeruginosa # 4 179 129 300 308 68 28.0 7e-12 MDYFKNRPKAINLVAGVICLIGVGFVSLKPGGSLSLSAGDWLTIATAVIFSFNLTCLGVY TKRFDPIAVTFVQFGVAGVLFIIGALFTEPMPNASWLAPSVVASVLYLFLGATMSAQIMQ NIGLAHVPASQASIIMCTESLFAVTFSALFWGETIMWSSLVGFALIFVAVLMSVIKPTKQ SLHRN >gi|316915767|gb|ADCN01000026.1| GENE 5 2726 - 3154 404 142 aa, chain - ## HITS:1 COG:PAB2381 KEGG:ns NR:ns ## COG: PAB2381 COG0697 # Protein_GI_number: 14521649 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pyrococcus abyssi # 23 139 7 119 280 58 31.0 5e-09 MGLVERFSKLRSRWSRNFPPNLARLMLLGCAALWGGSYLLAKFAMEAIPPQWLMGLRMIG ACLCMLALFHKHIVPYLTPKIIVPALVVGLTYWGTMVTQTIGLQTIEPGRSAFLTAAYCV LTPFATWIISKTARRPSIWSPA >gi|316915767|gb|ADCN01000026.1| GENE 6 3078 - 3317 93 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRARFGGKLRDQRLRSLLKRSTKPMVHLRTVRKTCGSLGSQITGTTGQNRPVDGCRVCD RCVAGARPGHGIAKQAKTG >gi|316915767|gb|ADCN01000026.1| GENE 7 3435 - 3774 276 113 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 113 1 113 368 187 96.0 1e-46 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDAL Prediction of potential genes in microbial genomes Time: Fri May 13 13:05:54 2011 Seq name: gi|316915751|gb|ADCN01000027.1| Bifidobacterium sp. 12_1_47BFAA cont1.27, whole genome shotgun sequence Length of sequence - 17020 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 23 - 481 181 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 556 - 975 811 ## COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase + Term 990 - 1029 8.2 - Term 866 - 912 0.4 3 2 Tu 1 . - CDS 1003 - 2298 928 ## BLD_0324 SAM-dependent methyltransferase - Prom 2321 - 2380 1.5 4 3 Tu 1 . + CDS 2367 - 3212 778 ## COG0406 Fructose-2,6-bisphosphatase 5 4 Op 1 . + CDS 3327 - 4277 1198 ## COG0598 Mg2+ and Co2+ transporters + Term 4329 - 4369 5.5 6 4 Op 2 . + CDS 4373 - 5218 506 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 7 4 Op 3 . + CDS 5261 - 8224 4756 ## COG0495 Leucyl-tRNA synthetase + Term 8278 - 8316 -0.9 8 5 Op 1 7/0.000 + CDS 8460 - 9164 425 ## COG1555 DNA uptake protein and related DNA-binding proteins 9 5 Op 2 . + CDS 9161 - 10915 790 ## COG0658 Predicted membrane metal-binding protein 10 6 Tu 1 . + CDS 11055 - 12401 1101 ## COG1228 Imidazolonepropionase and related amidohydrolases 11 7 Op 1 . + CDS 12504 - 13439 850 ## COG1466 DNA polymerase III, delta subunit 12 7 Op 2 12/0.000 + CDS 13460 - 14026 500 ## COG0802 Predicted ATPase or kinase 13 7 Op 3 20/0.000 + CDS 14088 - 14969 932 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 14 7 Op 4 9/0.000 + CDS 14986 - 15540 578 ## COG0456 Acetyltransferases 15 7 Op 5 . + CDS 15525 - 16580 641 ## PROTEIN SUPPORTED gi|227411248|ref|ZP_03894449.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 16666 - 16701 0.4 - TRNA 16771 - 16846 90.2 # Asn GTT 0 0 - TRNA 16890 - 16963 70.5 # Asn GTT 0 0 Predicted protein(s) >gi|316915751|gb|ADCN01000027.1| GENE 1 23 - 481 181 152 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 128 192 312 317 74 39 5e-13 CMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVD EALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKL LGYKTPNEVWDEEMAKLQSKQADPKPAVALTS >gi|316915751|gb|ADCN01000027.1| GENE 2 556 - 975 811 139 aa, chain + ## HITS:1 COG:FN1138 KEGG:ns NR:ns ## COG: FN1138 COG3576 # Protein_GI_number: 19704473 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase # Organism: Fusobacterium nucleatum # 6 136 4 142 143 91 39.0 5e-19 MKGFDMAVITPEIKEFIKNNLGWITTVSKDGELDLGPKMSLFVLDDTHIAYHERTAGQHY ENLKNGSPLVIAFANLEKKQGYRFRGNVVLHVDDDIYNEQVKVAEEKGTKKPAVIPVLEV TEIQDLASGPTAGKTIAKD >gi|316915751|gb|ADCN01000027.1| GENE 3 1003 - 2298 928 431 aa, chain - ## HITS:1 COG:no KEGG:BLD_0324 NR:ns ## KEGG: BLD_0324 # Name: not_defined # Def: SAM-dependent methyltransferase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 431 1 431 431 874 100.0 0 MEISESTWAFIAKHRREDVRDVALHAKHDGDVDVPFALEQIAGWQRASLKLPDWASHDGL IFPPQVPMEQCSSQFTAQYKARLAQRLLAEEAVDDDSPTSLVDLTGGFGVDFSYMSRVFN RAIYVEQQSILCDIARHNFPILGLDHAEVINDDSTAVLDTLGRVSMIFLDPARRDDHGSR TYAIADCMPDVLTLKDMLLAKAPTVMVKLSPMLDWHKTVADFAGAVHEVHIVSTGNECKE LLLVLGRGRYASPLVVCANDEQVLSYKAGDNSDNHTTISDSALAARNTCNTEDSLSEESA NDFDSSHWKYLYEPNASIMKAGCFDVLEQRFAVHHISPNSHLFVAAEPIADFPGRSFAIE SIATMNKKELKQLLAGLTHANIAVRNFPLTVAQLRKKLKLKDGGSTYLFATTDAQGRHLV LRTKKRKSGSL >gi|316915751|gb|ADCN01000027.1| GENE 4 2367 - 3212 778 281 aa, chain + ## HITS:1 COG:Cgl2299 KEGG:ns NR:ns ## COG: Cgl2299 COG0406 # Protein_GI_number: 19553549 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Corynebacterium glutamicum # 1 231 1 189 236 88 29.0 1e-17 MIDEVMMLRHGRTQYNLEHRLQGQIDVPLDIVGQWQVDQTGFALASRYYWAKVNRLAEHP EAIAQPGPDAAERTDTRQFEEAPAAGRRMVVMTSDLFRAQQTAHAFADILGLPVTCDQRL RERSFGEWEGMTRAEIKAVAADDYASWKQHTGGETKHGVESRAAVGQRGADAVRALVIDS AYSDSTPTTLMLVTHGSWITATISNLLELDPDGMNALGGMRNACWCRLKVRHSVNGTPIE QPLWELEEYNKAPAIADSADWENGPTDLRGPHMPSWQPIVW >gi|316915751|gb|ADCN01000027.1| GENE 5 3327 - 4277 1198 316 aa, chain + ## HITS:1 COG:SP0185 KEGG:ns NR:ns ## COG: SP0185 COG0598 # Protein_GI_number: 15900122 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Streptococcus pneumoniae TIGR4 # 1 315 1 314 314 269 49.0 7e-72 MLRIFSSINGQVEQIEKPENGSWLCLSEPTDVELATVASQTGIDLADLRAPLDDEERSRV DVEDDYTMIIVDIPTVEERGGRDWYETIPLSIIVTENLIITVCMQDTPVLHPFMEGTIRG FNTFMRSRFILQILYRNATMYLRYLRIIDRESDKLELKLRHSMQNREIVMLMELSKTLVY FTTSLKSNEIVMEKLTTLQRIKQYPDDEDLLDDVITENKQAIEMANIYSGVLANMTDAFA SIVSNNLNNVMRIFTIISITLSIPTLIFSMYGMNFDGGMMGMPFTDKPWGFMLIIVISMV LSGAVAWFLTRSRMFK >gi|316915751|gb|ADCN01000027.1| GENE 6 4373 - 5218 506 281 aa, chain + ## HITS:1 COG:BS_glnH KEGG:ns NR:ns ## COG: BS_glnH COG0834 # Protein_GI_number: 16079797 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Bacillus subtilis # 8 252 13 259 273 105 32.0 1e-22 MAGFAAAFGVILLLSGLAGCGQIQVTTVSGAPEGPTIAIGVAADEPSVGAWHDGTYQGFD ITIAKYVAAKLGYANKQIVFKQVRPENRRSMLDNGQVDMVVASWPITDESSAIVDFAGPY LTTSVGLLVRSDERGRFTNDAGSVGDVGDGTVCAVKGDETVGIFRGNHPQARIQERSSYA QCVTAVQVGSADAIASDMAVLSGLQAANGPQYMDVIADKGEVGYGIAVSQGTSQLAQKIA EALEDMVEDGSWTAAKDTFTSQTKLTVSLNGDPKAIVSDAE >gi|316915751|gb|ADCN01000027.1| GENE 7 5261 - 8224 4756 987 aa, chain + ## HITS:1 COG:Cgl2961 KEGG:ns NR:ns ## COG: Cgl2961 COG0495 # Protein_GI_number: 19554211 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 15 984 13 950 952 984 52.0 0 MSDNEKSTQTEEPNFRYNAALAQDIENKWQKIWDEQGTFWAANVNGDLKDGKGRNAEGRT AYFAMDMFPYPSGKGLHVGHPLGYLASDVVSRYHRMKGENVLHAMGYDAFGLPAEQYAVQ TGQHPRVTTEANIANMSRQLHRMGLSFDNRRTFATIDPGYVRWTQWIFSRIYDSWYDEDA TNPSGSKGSARPIAELVAKFESGEKAIPGHESDGKQWSDLTDAEQQDILNDFRLAYISKS PVNWCPGLGTVLANEEVTAEGKSERGNFPVFQRELRQWSMRITKYGHRLIADLDGINWPE KVKLMQRNWIGESHGASVHFIVATADGDKDMEIYTTRPDTLFGTTFAVVSPEHHLLENVP AEWPADVPEDWKGGYANPVEAVKAYRLAAEAKTAKDRVNEAGEKTGLFTGLYATNPITGA KLPLFTADYVLMDYGTGAIMAVPGGDQRDYDFAVKFGLPVIYTVTPLPDSGDDLANYEGK APFVSHDGIVINSSVEATEAKGDALSLNGLRVDDAIAKVNAWLESAGVGKGTVSYRLRDW LFSRQRYWGEPFPIVYGEDGTPHLLPDSALPINLPDVPDYEPRTFDPMDAESNPEAPLSR NEDWGKVELDLGDGKKTYYRDTNTMPNWAGSCWYYMRYIDPTDTKHMVEKDEFDYWMGPN HNKYSGDEGGVDLYIGGVEHAVLHLLYSRFWHKVLFDLGYVDSAEPFHKLFNQGMIQAYA YTDDRGQYVPADEVVEGPADASGEPTFTWNGEHANREFGKMGKSLKNIVTPDYMYENYGA DTFRLYEMSMGPLDESRPWNTRNVVGGMRFLQRLWRNVVDETTGQAHVTEDTPDEKTLKL LNNTIAEVTAEMEGMRPNTAIAKLIVLNNHLTGLKAVPRAAVEPLILMLAPIAPHICEEM WSKLGHAESLSAEPWPVADERYVGHDTVTAVVQIKGKVRAKLEVPVDIDPADLEKQALAA VADRLGGKEPRKVIVKAPKIVSIVPAE >gi|316915751|gb|ADCN01000027.1| GENE 8 8460 - 9164 425 234 aa, chain + ## HITS:1 COG:TM1052 KEGG:ns NR:ns ## COG: TM1052 COG1555 # Protein_GI_number: 15643810 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Thermotoga maritima # 173 233 47 107 181 71 59.0 1e-12 MPQPRVERPTTPPPPPGHARIRPAGHPPQRAQSGLRQATRDKRALSDLIGVRSADAVGES ARLTRDQPRLSFTIGHALAVILLLIVALGISLALLVQQSMNMAMLSQPTAMQTTGGSAGD QTMPSQNTTDEKRTDPQQSEHSDATANPESDTTQSPHMQTDGSDAGASTHGLINLNTATA EELQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLLDVKGIGSKTLETMRGQVTVG >gi|316915751|gb|ADCN01000027.1| GENE 9 9161 - 10915 790 584 aa, chain + ## HITS:1 COG:Cgl2296 KEGG:ns NR:ns ## COG: Cgl2296 COG0658 # Protein_GI_number: 19553546 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Corynebacterium glutamicum # 220 483 145 398 554 73 29.0 9e-13 MSRDWILREQGSRDWRMLPIAIVMWAASLGAHALFAWRMSDGLGTGQAKADAGAGIDVTI IGMEWPVTRILPITVASCAAVAAMIVVSFRLRIRWTGTLTVCVAVACIGSMTAIASDTIA WHDPASAQARQSSSYHEVMATVTTPVIASDQRTYDCQTDIRLSGITVDGTDVRSTVAVRV YADESYCGQLRRGAVYLLTGVLQQARYGRIPLWLLLEGKQPVAQVRAPPWHLAAIAHVQE AFFTVTEQLSDQGRVLVPGLTMGVLGQDYIGGETGPMPVNSTYAQTLENQFRQSGIMHLM AVSGGHFVLVAGLVRRLCMWMLLDRRLTALLVSGVYVLLALAMFPSDSVTRAFIMGLIGA LTYAMGRRTQALSALCWTVIGVLAVNPDMSASYGFALSSAAVLGIVLFAGRLAGAFERAM PHGIAEMMAMTVAAQLFTLPIQVLMEPELPLLSVPANLLVSPFVGLATMAGLMALACAWC EPWLAGVFAWISSWGTLVMERVALWLGGSTMAVIPWKDGVTGAVLIVAVEIGIGMLLVFV SRCLQHVRRYEAGMPGVRFGSAWHVRLSLWCEETRRLFTRRQAE >gi|316915751|gb|ADCN01000027.1| GENE 10 11055 - 12401 1101 448 aa, chain + ## HITS:1 COG:CC2672 KEGG:ns NR:ns ## COG: CC2672 COG1228 # Protein_GI_number: 16126907 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Caulobacter vibrioides # 34 431 50 429 429 159 30.0 1e-38 MMLSHNPIVEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYL DGTGKIVMPGLINAHTHLFSQGKPLNPKLATPKGQRMVATFAHSPLGKPYMAATVRHNAT TLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSG TPEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVI VGAHAQSPEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALVPTLSAGLPLT LLGQDATGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELEL LVAYAGFSPAEALHAVTAVNASILGVDAETGSLEVGKSADLLVLNANPLDDLRALEHPAL VIAAGHPVWRPAPKRFADIDALLDEAYA >gi|316915751|gb|ADCN01000027.1| GENE 11 12504 - 13439 850 311 aa, chain + ## HITS:1 COG:Cgl2295 KEGG:ns NR:ns ## COG: Cgl2295 COG1466 # Protein_GI_number: 19553545 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Corynebacterium glutamicum # 23 311 45 330 331 106 28.0 5e-23 MPGGDSYLNDARTKALCAQALKARPDAELIELDATSADQYAFDEAVSPSLLSDVAVVKLV NLQNADEKLAEALVTYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDL KKPDAQLNFVLGEFEKRGRRVEPMAAQQLVSVLGGKTGELAAMCEQLCFDFDDNPMGLDR VNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGALAMKLRTIAKAS AVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQSKTNGGDPVYALE RCIEDISHKGR >gi|316915751|gb|ADCN01000027.1| GENE 12 13460 - 14026 500 188 aa, chain + ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 12 182 12 143 158 84 37.0 1e-16 MSEHTIAAPTSEAMQELGRRVAGMVHGGDVLLLSGPLGAGKTTFAQGFGAGLDITEPIVS PTFTIARELDGHFADGTPAHLVHVDAYRLGGSAYAPGQDAIGRLLDELESLGLDEELEDP GENTVVLMEWGEQMATALAPERLEIHIDRPLDSSDVASAGSDGELTSNGTRTVAFVPVGK RWAAFDLQ >gi|316915751|gb|ADCN01000027.1| GENE 13 14088 - 14969 932 293 aa, chain + ## HITS:1 COG:Cgl0576 KEGG:ns NR:ns ## COG: Cgl0576 COG1214 # Protein_GI_number: 19551826 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Corynebacterium glutamicum # 6 280 17 212 225 63 26.0 3e-10 MGCTLVIDTSFGSTVGIVGREPIVETDSRTHVEKLQVNIARAVEEAGLTPADIEEIVVGI GPAPFTGLRAGIVAAKALAFATGAKLVGQNVLDPQGEMMNFVLGDSAMFDGIDFLADVPR LSSRQSDGDVPDAEAKEHELDRHVTLCVNDARRKQLYFSLNHGSISLPDEDAAERRWIEM DIDYPEHIVERVNAALAEHGERDGVSYVVDVTGHGAAKYASVWQGLRALGSVVDGSVLDA GKAGLAVFATTALSRELRGDQVVPIEPLYLRRPDAEVPNPLKHVLGHAGADKA >gi|316915751|gb|ADCN01000027.1| GENE 14 14986 - 15540 578 184 aa, chain + ## HITS:1 COG:MT3529 KEGG:ns NR:ns ## COG: MT3529 COG0456 # Protein_GI_number: 15843016 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 3 151 8 153 158 88 42.0 7e-18 MIVDITAVSRDLAVRSIAQLEGELFGRGAWNANMVREELDAPARTYLLDVLGEAEQAVVR GYAGFWYDGEDAELMTIGVGKAYQRQGIAAALLQVLVDEAKRQGASRMLLEVRVDNDPAL ALYQRFGFERMGLRKRYYQPEGIDAYTMSLDLKPRVVGFAAPQTASADIEDITSKQTEKN GEAR >gi|316915751|gb|ADCN01000027.1| GENE 15 15525 - 16580 641 351 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227411248|ref|ZP_03894449.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Eggerthella lenta DSM 2243] # 1 325 541 867 891 251 41 2e-84 RRSTMSEPVVLGIESTCDETAAAIVRGRELLSNVVASSMEEHARYGGVIPEIASRAHAEA FVPCVSKALVDANMTLADVDAIAVSAGPGLAGCLAVGVSGAKALAWAANKPIYGINHVIG HIAVTQLQFGPFPKDTLALIVSGGHTSLLHVEDMPRKIDVVGTTLDDAAGECFDKVARLL GFPYPGGPHIDRHGQNGDPHAIKVPMGLTQGKAGAAHPYDFSFSGVKTAVARWVESEQAA GHEIPVDDVCASLADSVATVLARKAMRGCRQYDSNTLIVGGGFSANSQLRAKLLEFGEKY GVDVRIPQIKLCTDNGAMVAMLGVNLVEAGVAPSAPDFPIDSAMPLTKVSM Prediction of potential genes in microbial genomes Time: Fri May 13 13:06:05 2011 Seq name: gi|316915729|gb|ADCN01000028.1| Bifidobacterium sp. 12_1_47BFAA cont1.28, whole genome shotgun sequence Length of sequence - 19295 bp Number of predicted genes - 22, with homology - 21 Number of transcription units - 7, operones - 5 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 83 - 158 90.2 # Asn GTT 0 0 - TRNA 202 - 274 81.0 # Asn GTT 0 0 + Prom 493 - 552 1.6 1 1 Tu 1 . + CDS 649 - 1494 680 ## COG0582 Integrase - Term 1487 - 1543 16.1 2 2 Op 1 . - CDS 1551 - 1877 337 ## BL1459 hypothetical protein 3 2 Op 2 . - CDS 1896 - 2357 64 ## BL1460 hypothetical protein - Term 2674 - 2734 1.1 4 3 Op 1 . - CDS 2822 - 3409 473 ## BL1461 hypothetical protein 5 3 Op 2 . - CDS 3447 - 3764 190 ## BLD_0340 hypothetical protein 6 3 Op 3 . - CDS 3824 - 4861 1031 ## BL1463 hypothetical protein 7 3 Op 4 . - CDS 4901 - 6718 1731 ## BL1464 hypothetical protein 8 3 Op 5 . - CDS 6734 - 7819 1305 ## BLD_0345 antirestriction protein 9 3 Op 6 . - CDS 7845 - 8555 722 ## BLD_0346 hypothetical protein 10 4 Op 1 . - CDS 8713 - 9798 1168 ## COG3942 Surface antigen 11 4 Op 2 . - CDS 9795 - 10754 925 ## BLD_0348 hypothetical protein 12 4 Op 3 . - CDS 10751 - 11149 474 ## BL1468 hypothetical protein 13 5 Tu 1 . + CDS 11334 - 11627 542 ## BLD_0350 hypothetical protein 14 6 Op 1 . + CDS 11741 - 13900 2140 ## COG0550 Topoisomerase IA 15 6 Op 2 . + CDS 13975 - 14406 445 ## BLD_0352 hypothetical protein 16 6 Op 3 . + CDS 14500 - 14649 94 ## 17 6 Op 4 . + CDS 14732 - 15121 377 ## BLD_0354 hypothetical protein - Term 15007 - 15056 -0.8 18 7 Op 1 . - CDS 15167 - 16198 564 ## DSY5047 hypothetical protein 19 7 Op 2 . - CDS 16161 - 16403 268 ## gi|229816963|ref|ZP_04447245.1| hypothetical protein BIFANG_02217 20 7 Op 3 . - CDS 16435 - 17943 1019 ## BLD_0355 hypothetical protein 21 7 Op 4 . - CDS 17977 - 18759 733 ## COG3177 Uncharacterized conserved protein 22 7 Op 5 . - CDS 18826 - 19254 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316915729|gb|ADCN01000028.1| GENE 1 649 - 1494 680 281 aa, chain + ## HITS:1 COG:MT2724 KEGG:ns NR:ns ## COG: MT2724 COG0582 # Protein_GI_number: 15842187 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mycobacterium tuberculosis CDC1551 # 1 243 83 325 332 106 31.0 4e-23 MDAVGRTNDTLRTRWYQIVRFSKAVDKSITDVTEDDLIFYLAGMGTEGRRGVRSCVKVFY QWSMKRGLARRNPADEVPTVPMTLPSGCICPEENIEQGLASPDENARLAVMLGAFCGLRR IEMTRINLKTDLEENAEGMVLHVHGKGNKERMLPVPAKLASALRKRTGVWLFPGDVQGHC GVDYVAKRIKTVTGYPSHSLRRRFATCVYYRNGCNIVLVSRMLGHANIATTMRYIGLVQD EMRNAVESTTRTDMRLTMPMNQVVGTAGSVATYSLSTARIG >gi|316915729|gb|ADCN01000028.1| GENE 2 1551 - 1877 337 108 aa, chain - ## HITS:1 COG:no KEGG:BL1459 NR:ns ## KEGG: BL1459 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 108 1 108 108 182 100.0 4e-45 MSNLDYNLPEPTKAQLEYARYLSRFQAPRERRTLFARTESDIAAAFREETANHSWNADDL ASQAGIDPRFADALLQRGEAPIEAVFSAADALGIDIAALPLSSLGNTR >gi|316915729|gb|ADCN01000028.1| GENE 3 1896 - 2357 64 153 aa, chain - ## HITS:1 COG:no KEGG:BL1460 NR:ns ## KEGG: BL1460 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 153 165 317 317 297 100.0 7e-80 MFPALSGQIILDVESPTEILADKLLSYACASHLRRRDLWDMCWLASRGDVDSRRAMELAE LKSSDYGEEGLWADRADRVAGVADVIGSDAFADEMRRFLPAGLMTSTVESPRWSAWAIEQ IGTLYGTPGTPSSADAVPGFPIFGASNDSSPTR >gi|316915729|gb|ADCN01000028.1| GENE 4 2822 - 3409 473 195 aa, chain - ## HITS:1 COG:no KEGG:BL1461 NR:ns ## KEGG: BL1461 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 195 5 199 199 367 100.0 1e-100 MRFYIYSCTLICMKRSEAIDQLREMDAKYSCYVYCKNELAVVLGEQGQKLNRTLSSLVSA KALVRAARGVYVFAYSSHLGEGTLHQVAKRLRSGELVWESLESALSRWNVISQIPVDRVT FMTTGREGEFRTAYGVIEFTHCKLSWSRILPNLIARDDGLTPLASKQWAYRDLKAVGRNL DLVDMDELEDDDDWS >gi|316915729|gb|ADCN01000028.1| GENE 5 3447 - 3764 190 105 aa, chain - ## HITS:1 COG:no KEGG:BLD_0340 NR:ns ## KEGG: BLD_0340 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 105 136 240 240 216 99.0 2e-55 MFENIHPFTDGNGRTGRQILNLMLMAAGYRPVAIKHDAGRSYGKSLEAWQVDGDPKPFIS QLVQCVDQEERAVAEIVGRLRENPFSENAIDGIGLEDGPARGRSL >gi|316915729|gb|ADCN01000028.1| GENE 6 3824 - 4861 1031 345 aa, chain - ## HITS:1 COG:no KEGG:BL1463 NR:ns ## KEGG: BL1463 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 331 1 331 344 628 97.0 1e-179 MDMNWIDEIRDPEPRKRYIYNADDYDPQYGDPYYREHSTRADSLWRLYEESGTSITFDAF ADESRQTDYRMETGALRDFFNGSQSALSSYRNPMGGNPLIAFGSIGRWDGERTGISSFET FDDLMNGDDSPFKDCEIDRIWDENGILKMRGHHHDGSVEVEIRQLTDQGCEALESYEQSW AGEPFDAAGRHYDGGKESVDRFWNDLKTDRGLAAEPRYVELAFGCPPIEWDIDARVRDFA ERMGDEYTSLYEQDTTGIKGGDFERFGAFADNHLDFIRALTKARGMDPISSDREIAAFLN TFDKLAAMPEPSPASQEKDELSAGVCDPTDPTMGCLQPDSPAAIR >gi|316915729|gb|ADCN01000028.1| GENE 7 4901 - 6718 1731 605 aa, chain - ## HITS:1 COG:no KEGG:BL1464 NR:ns ## KEGG: BL1464 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 605 1 605 605 1179 100.0 0 MALTPFDMEGVNRDLLAAGNPAKPDMQSILRRNARDLVLGNAILVSSVDAKELEFGVHMA YSDADGGFDTDPSEDVWFEASSLPIPNERPDLPPDNALRIRVTDVLTEYGFTDIDVKAPD RTPEGIWIGFEAMQPVRLDVTSAQEGRSVSFTLTAAEANDWRSGRLDAHGLSRMAVERVL ARPGDTVTLAYGDSLFRPAVMCDGSGRLPEHRVKAGIGTFVIGRESEAVMPEILRIDRTV DPRDPLVIEKAFGKENDMENGNVPEYWKGLMDEADLPLAGIVREHGGGLMDFHRMKGIER LTGSSDWDFYSWTVENYDDDLLDVCERENAADVLADLQAWWKTSQPDMRQHVDEMMAGID AAMEPLDKRLYAAAEKEFKERALDPDGECYQLDGGTFISQESFDGICGDQRDRYMAWKNQ AEPARLVSAWDDPARLDRLVGDLIDADDGGGCFYTDAQPIDYTQGMDYSPQQLAADSGLG DTVPLACESNASYSLAHHPDIKFTATGSPDGRKALEVSAPGSARHALITAKPGTFDVSLH DERGIVSGESFPYEANDSWTYRLSGQALRGALDLAVGWADPQETSPETAGLGLALDDGME TTHGR >gi|316915729|gb|ADCN01000028.1| GENE 8 6734 - 7819 1305 361 aa, chain - ## HITS:1 COG:no KEGG:BLD_0345 NR:ns ## KEGG: BLD_0345 # Name: ardA # Def: antirestriction protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 361 1 361 361 676 99.0 0 MAGLKDYQISVYVANLGKYVEGVLQGAWITLPMPAERLQDTLKTEVGLGGRYEEYAIHDY EGGEGLLATVANPGEYESLTDLNLMCRAFEAREDDDPDVYEKVQTVRDDLDAVPRTPLQY ANLALNSDEIPYHSYDAPSSAESKEAKYAWTAVNHGWASDAVWSMFDTGLGYLIDMEMYG RDLKLDGDVSLGDNGYLEDADWPSDIDGRYSREEVAEEVEWLDDFDAKTGSPAAFDLASL VQPGERIADYTISGTGTNWGAPSYQCIVEEGSTDIHAALEDTMHRIIDARAATGDAVDVL RETMGAMPAASVGEDDGVSPIDLDLGYVLPGAVTSFAERAQACDPSDPLNMTDTAGSGLS K >gi|316915729|gb|ADCN01000028.1| GENE 9 7845 - 8555 722 236 aa, chain - ## HITS:1 COG:no KEGG:BLD_0346 NR:ns ## KEGG: BLD_0346 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 236 1 236 236 407 99.0 1e-112 MLMEPDEYTSQERALTDKAKELIEQHELDWGNGECFIQRDAGHSELYMTLEAPNHATVSV TVPAEADEKGLRRAMADGLLDFDPDEEFDECWSREFAARNGFTPSGFLSGLQEDKAYFGL RSEALLHPGQSNAGQGNETIAEIRWTEEDLRHWLKDHDWPDNNENMDAMRDMISARELRD RSIEEGWEIIDAMVDDGRLARKDEGEKAETSETYDPANPADPLSIADTSASAAATR >gi|316915729|gb|ADCN01000028.1| GENE 10 8713 - 9798 1168 361 aa, chain - ## HITS:1 COG:SPy2025 KEGG:ns NR:ns ## COG: SPy2025 COG3942 # Protein_GI_number: 15675802 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 77 183 417 521 541 77 45.0 5e-14 MSRASRHRILAAMLSACLLSLLGGCTPLTVLAVLGGCKDGGSNGSSGGVTGSVTTGEVRD GMTIAQTKAWFNGSDGPDNVCQAYPDGQCTWWACMRGHKIGLDVGSYWGNGGDWAASATA AGWKTTRTDPVAGSIVSYPPGVADADTLYGHVAVVEAVDRTAGTVTISEMNGRGGLGIVN HRTHRIDVGAVYILPNGSVSTNGSAGTDSTSSGSESSDSSSSSDSSSSSDPVEAAWTCSS SDSGSTDVVVDYDGDGTHATPEQARAIARKMIASYKDWGDGDYDALVWLWNKESGWQWNA TNPSSGAYGIPQALPASKLASAGDDWKDDAATQIKWGLNYIAGRYGSPSAAKTFWLAHNW Y >gi|316915729|gb|ADCN01000028.1| GENE 11 9795 - 10754 925 319 aa, chain - ## HITS:1 COG:no KEGG:BLD_0348 NR:ns ## KEGG: BLD_0348 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 319 1 319 319 617 100.0 1e-175 MNRPEPRPLPKPLRVLCLFVAALLVCSLGVIVANHQPSTAGDDHGSATDAKQESTGKRKT DSGPRRYAGLEAAGIPVPGDWSQRTTAFPVDTHKDGTRTLSENADGITLHNGSGPIDTAL ETVDALLDPNGSDDEWRKNVFALLGDDGAGESHPVSDAPRWWWTQRRFHAGSVCSGQYDD KYVNYAYTCTSDGKWEGSDTDAIQSQPFWTTKETSFPIPEGGGPSSTTDPQQTVSQAYNT VLLPMDDGNWHVTVYCPAALDASLLDKDANELDPDQVKAGDEAYTVISATGYGTVQHPCR TVEVVVGGQKPFWSLRNTQ >gi|316915729|gb|ADCN01000028.1| GENE 12 10751 - 11149 474 132 aa, chain - ## HITS:1 COG:no KEGG:BL1468 NR:ns ## KEGG: BL1468 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 8 132 1 125 125 182 98.0 5e-45 MANNQNTMRDMKRSILKAVRDSQKTKQDAMDEYVAARVNIKSLEERLEEAREKATLLRRK AKDAGNTSAELKTADDLIDARWTGTEDGSAEDGSPENADPGTVNPEREHPAMEENTQGGM PGEPNRWEGGES >gi|316915729|gb|ADCN01000028.1| GENE 13 11334 - 11627 542 97 aa, chain + ## HITS:1 COG:no KEGG:BLD_0350 NR:ns ## KEGG: BLD_0350 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 97 1 97 97 114 100.0 1e-24 MESFLSMLAGWFMGLWTWLVELNGMLQVVLVLLCVVASGVCAIIGKRMGSPMIVESGGQT WSRTLVTAIAWIAGVILMLIAVLAIAAVFAPLLGFAA >gi|316915729|gb|ADCN01000028.1| GENE 14 11741 - 13900 2140 719 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 3 700 5 691 709 340 33.0 6e-93 MKLVIAEKKSVATAIAQALCAAPVQRDGCYECGQLLVTWAQGHLIDLAMPEDYKDRDWRK WSLDTLPVDPSGHWQWKISEERGAGSRYRQIVRLIRRADVDCLVNACDPDREGEAIFRRI ADMEGSHKPELRLWVASLEAEAIQAAWRAMKPESEYQGLAWSAEIRSKADWLIGMNASRA YSLLYNARFSVGRVQTPTLAMIAERDRQIRNHKPVPFWTVIADMGGWRLSSERIDSKDAA MLLCGQAEHGRFRIMSVNRRRVNDRPPRLYDLTGLQKDMSRMYGMTAARTLAALQHLYEL KLATYPRTDSRYITHDDLETLTALLESGRLAQGFVTREGIPGHPRPELAVNDAKVAGHTA ILPTMQLDAGKLEGLDDDERKVMTRIVRRMWEAVGDDHVHIVTEVKARLSDDTDREFSSR SDETVSAGWKAVETGHGPEPEDEETANPAGGRNVIPSNLMEGGVIRPVGKVTVEEGETRP PKPFTEATLLAAMEHASRCVEDKNLKAALDDDESHSGGIGTPATRADTIEKLVRSKLVER KGRQLHATTEGERLTDVVEPRLKDVLLTARMEQALSDVEHGKRGPSEVMDMFHREALRIP ADATANLKADAVTRTANTDAQEWGDCPRCGQPVRKTGRMWQCSTNKTEKTKDGKWATTAG CGWKMFARIAGKTITDQTARRLLAGQSVTLKGFTSKSGKKFDAAIRIDKERGTAFDFDR >gi|316915729|gb|ADCN01000028.1| GENE 15 13975 - 14406 445 143 aa, chain + ## HITS:1 COG:no KEGG:BLD_0352 NR:ns ## KEGG: BLD_0352 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 143 1 143 143 282 100.0 3e-75 MRRYSHAFRVLMDQELFNLLAEASTKTGIPKSRFVRYAIQPFSYTELAPGTTDWNDVYRT DPDPEHPLKRGRQLNVMLTGDEYEMLCRAAFKLGIARSAWVRERVYALLCRSYADELSPL TDASIRDNATMLLKELKTKDAGR >gi|316915729|gb|ADCN01000028.1| GENE 16 14500 - 14649 94 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDMSMDTHMDTSIDIHMDMSMDIHMDMSMDIHMEMPIKSKVSKLDGSCT >gi|316915729|gb|ADCN01000028.1| GENE 17 14732 - 15121 377 129 aa, chain + ## HITS:1 COG:no KEGG:BLD_0354 NR:ns ## KEGG: BLD_0354 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 2 127 3 127 147 141 73.0 8e-33 MRKRSSKGGGEQRSIQVHLMVNEEEAGMIRTAAKKRNQTVSLTIIEAVKLLEGRLQVKEE ERDSPTVQALKEIEYQLRRIGRNVNQIAHNANREMNATIEDEASASYAVRQCRELIDHLD TVIERSGND >gi|316915729|gb|ADCN01000028.1| GENE 18 15167 - 16198 564 343 aa, chain - ## HITS:1 COG:no KEGG:DSY5047 NR:ns ## KEGG: DSY5047 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 1 299 1 295 324 127 30.0 8e-28 MTDGRRSMERVRDFSPYELKVSVYDGAAEKRTMLMDGHLYMVKFGYDAAPQEEHPSRTSY VNLPVNEYIGSKVFAASGIPTQDVILGDYKGRSVVACRDFMYEMDPNLMLLHFKQLEISM PGGSSRSKARPDWEFVSQVLDEHDALEGIRARARHRFLQMTCVDALIGNFDRHANNWGFI ADRRTADILDLAPVYDCGSSLSPSLSREGMRERVEDPQQMREANMAAPYMAMNVGGKRRK FAFFLTSETARPFRAELPELWPRLSEEVTDRIVEQTPGLDDLQRDFYKATLDARRKYVLG PAYRMALKEAETSTATVGNDTLATDIVPGIPFPGLGGNPGLLH >gi|316915729|gb|ADCN01000028.1| GENE 19 16161 - 16403 268 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|229816963|ref|ZP_04447245.1| ## NR: gi|229816963|ref|ZP_04447245.1| hypothetical protein BIFANG_02217 [Bifidobacterium angulatum DSM 20098] # 6 72 12 76 81 75 53.0 1e-12 MDVSMIRRPQDWPFPIPQITAESIDELIDALHRDVSDSTLSIYYDAVDGCSREMENEDQE MMVREYYLHDGWAAKHGTGA >gi|316915729|gb|ADCN01000028.1| GENE 20 16435 - 17943 1019 502 aa, chain - ## HITS:1 COG:no KEGG:BLD_0355 NR:ns ## KEGG: BLD_0355 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 94 454 36 396 422 698 96.0 0 MGLFTVGLRDDDFEPAYNDVPDRRDGGQINPYHDRINAQKSCRRMEKTRPELVELARSDT GTRVSWQYGQWRQWAEWKARNEYGDDEGWDALDGNDALRRLLGTGEDRKASQGHGIPTAL MYLGDDDAPVVADLETTWYDARRNKPNRSAEWRLYYAACEPIRMARPGDLMCFGMLRDNR LLIVITQHDSTAEAQAKWLFGIDDEQEGAFRFHDNTERELDAFGAQIFEALGINVEVRDD THLPEMIGRWGYRFPSNEEFASFSQSSLTDVDPAHDDPDDVVIEYYDRSYLLFKLYERAV IQHDYDAAPFVSDGIIDVDSFTSFYTSVRNRRMSRAGKVLEIHIAHILDARGIEYEAQAR TENGKKPDFLFPSQAAYEDPTFPETQLRMLASKTSIKDRFRQVADEANRIRDKHLFTLTP GDVTHPKLAQLDELHIHLVMPKVVKESYDDLIQGGDHDVLPVHRGGPGTSGGPSSKPDPS LTARRESSLISPTVRRRRRRRS >gi|316915729|gb|ADCN01000028.1| GENE 21 17977 - 18759 733 260 aa, chain - ## HITS:1 COG:NMA2029 KEGG:ns NR:ns ## COG: NMA2029 COG3177 # Protein_GI_number: 15794909 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 24 203 70 258 290 69 27.0 5e-12 MEPVRNDTTADRRTAVELAKRLLVDLIWRTAKIEVDGVTFPDTQEIFDGRAPEGMSVDDI VTVNNIKRAWGFLLGNIDYPVDWQYIREYNRIIGEGLVRDAGRLREYGVRIGGTGWVPEI PTVESSQERVRGILEESEGEDTAMLLFGAVTRGQWFSDGNKRTALMVANHQLIHDGIGVF SIPPEDKAQFVSMLLRYYETGDYSRLSDWLSQNAVGHVPGGLTLAQSSGVAEKTNDAANG MGIVPGVPLDGLDGGSGLLR >gi|316915729|gb|ADCN01000028.1| GENE 22 18826 - 19254 199 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 5e-15 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 13:07:27 2011 Seq name: gi|316915672|gb|ADCN01000029.1| Bifidobacterium sp. 12_1_47BFAA cont1.29, whole genome shotgun sequence Length of sequence - 55877 bp Number of predicted genes - 59, with homology - 56 Number of transcription units - 26, operones - 12 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 396 316 ## Blon_0449 integrase, catalytic region - Prom 431 - 490 2.2 2 2 Tu 1 . + CDS 537 - 1844 1054 ## BLD_0358 hypothetical protein 3 3 Op 1 . - CDS 1864 - 3147 666 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes 4 3 Op 2 . - CDS 3144 - 3458 354 ## BLD_0360 hypothetical protein 5 4 Op 1 . - CDS 3561 - 4694 1253 ## BLD_0361 hypothetical protein 6 4 Op 2 . - CDS 4681 - 5634 896 ## BLD_0362 hypothetical protein 7 4 Op 3 . - CDS 5634 - 7442 1904 ## BLD_0363 type IV secretory pathway VirD4 component 8 4 Op 4 . - CDS 7523 - 8164 610 ## BL1480 hypothetical protein 9 5 Tu 1 . - CDS 8266 - 9300 991 ## BL1481 hypothetical protein 10 6 Op 1 . - CDS 9405 - 9884 588 ## BL1482 hypothetical protein 11 6 Op 2 . - CDS 9895 - 10245 325 ## BLD_0367 hypothetical protein 12 6 Op 3 . - CDS 10260 - 11819 1663 ## BLD_0368 hypothetical ATPase 13 6 Op 4 . - CDS 11873 - 13360 1365 ## BLD_0369 putative membrane protein 14 6 Op 5 . - CDS 13385 - 15379 1976 ## BL1485 hypothetical protein 15 6 Op 6 . - CDS 15389 - 15691 546 ## BLD_0371 hypothetical protein 16 6 Op 7 . - CDS 15729 - 16211 431 ## BLD_0372 hypothetical protein 17 6 Op 8 . - CDS 16225 - 17463 1036 ## BLD_0373 hypothetical protein 18 6 Op 9 . - CDS 17460 - 18098 620 ## BLD_0374 hypothetical protein - Term 18254 - 18299 8.3 19 7 Tu 1 . - CDS 18421 - 23229 6985 ## BL1489 hypothetical protein - Term 23508 - 23548 9.1 20 8 Op 1 . - CDS 23568 - 24566 1004 ## BL1490 hypothetical protein 21 8 Op 2 . - CDS 24594 - 25505 792 ## BLD_0383 hypothetical protein 22 8 Op 3 . - CDS 25534 - 25764 322 ## BLD_0384 hypothetical protein 23 8 Op 4 . - CDS 25764 - 26018 310 ## BLD_0385 hypothetical protein 24 8 Op 5 . - CDS 26096 - 26689 803 ## COG1192 ATPases involved in chromosome partitioning 25 9 Op 1 . - CDS 26825 - 27301 484 ## BLD_0387 hypothetical protein 26 9 Op 2 . - CDS 27292 - 28695 956 ## BL1494 hypothetical protein 27 9 Op 3 . - CDS 28692 - 28892 198 ## BLD_0389 hypothetical protein 28 9 Op 4 . - CDS 28879 - 29043 206 ## BLD_0390 hypothetical protein 29 9 Op 5 . - CDS 29040 - 29186 104 ## 30 9 Op 6 . - CDS 29174 - 29551 194 ## BLD_0392 hypothetical protein 31 9 Op 7 . - CDS 29554 - 29895 200 ## BLD_0393 hypothetical protein - Prom 29928 - 29987 1.6 32 10 Tu 1 . - CDS 30070 - 30291 342 ## BLD_0394 Xre-type transcriptional regulator - Prom 30327 - 30386 6.2 33 11 Op 1 . + CDS 30181 - 30384 129 ## 34 11 Op 2 . + CDS 30421 - 30843 424 ## BLD_0395 plasmid maintenance system antidote protein - TRNA 30805 - 30877 81.9 # Asn GTT 0 0 - TRNA 30921 - 30993 81.0 # Asn GTT 0 0 35 12 Tu 1 . - CDS 31158 - 31370 132 ## 36 13 Tu 1 . + CDS 31502 - 32191 286 ## COG0739 Membrane proteins related to metalloendopeptidases 37 14 Tu 1 . - CDS 32269 - 33900 2119 ## BLD_0397 hypothetical protein - Prom 33941 - 34000 1.8 - Term 33962 - 34009 2.2 38 15 Tu 1 . - CDS 34149 - 35369 1783 ## COG0538 Isocitrate dehydrogenases + Prom 35345 - 35404 1.8 39 16 Tu 1 . + CDS 35497 - 36621 1834 ## COG0516 IMP dehydrogenase/GMP reductase + Term 36683 - 36725 6.6 40 17 Op 1 . + CDS 36783 - 37274 451 ## BLD_0400 hypothetical protein 41 17 Op 2 . + CDS 37365 - 39452 2698 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 42 17 Op 3 . + CDS 39459 - 39947 602 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 40045 - 40086 8.5 + Prom 40051 - 40110 5.5 43 18 Op 1 38/0.000 + CDS 40259 - 41149 1492 ## PROTEIN SUPPORTED gi|23326784|gb|AAN25298.1| 30S ribosomal protein S2 + Term 41157 - 41202 10.3 44 18 Op 2 24/0.000 + CDS 41228 - 42079 431 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 42122 - 42164 11.9 + Prom 42091 - 42150 1.5 45 19 Op 1 33/0.000 + CDS 42253 - 42993 1091 ## COG0528 Uridylate kinase 46 19 Op 2 7/0.000 + CDS 43070 - 43621 1064 ## COG0233 Ribosome recycling factor 47 19 Op 3 2/0.000 + CDS 43644 - 44630 1007 ## COG0575 CDP-diglyceride synthetase + Term 44751 - 44796 3.3 48 19 Op 4 . + CDS 44841 - 46010 1477 ## COG0820 Predicted Fe-S-cluster redox enzyme - Term 45735 - 45768 5.1 49 20 Tu 1 . - CDS 46011 - 46559 796 ## COG0693 Putative intracellular protease/amidase 50 21 Op 1 24/0.000 + CDS 46734 - 47504 1082 ## COG0107 Imidazoleglycerol-phosphate synthase + Term 47523 - 47556 -0.8 51 21 Op 2 . + CDS 47638 - 48033 565 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 52 21 Op 3 . + CDS 48114 - 49670 2136 ## COG0147 Anthranilate/para-aminobenzoate synthases component I + Term 49684 - 49738 21.3 53 22 Tu 1 . - CDS 49735 - 49974 122 ## BL0688 hypothetical protein 54 23 Op 1 1/0.000 + CDS 49986 - 51587 179 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 55 23 Op 2 . + CDS 51631 - 52338 1175 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 52362 - 52400 1.4 56 24 Tu 1 . + CDS 52409 - 52777 202 ## COG3824 Uncharacterized protein conserved in bacteria 57 25 Op 1 . - CDS 52832 - 53503 888 ## BLD_0418 hypothetical protein 58 25 Op 2 . - CDS 53500 - 54810 1296 ## COG1122 ABC-type cobalt transport system, ATPase component 59 26 Tu 1 . + CDS 54920 - 55877 674 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316915672|gb|ADCN01000029.1| GENE 1 3 - 396 316 131 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 131 1 131 358 227 92.0 8e-59 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDD >gi|316915672|gb|ADCN01000029.1| GENE 2 537 - 1844 1054 435 aa, chain + ## HITS:1 COG:no KEGG:BLD_0358 NR:ns ## KEGG: BLD_0358 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 435 1 435 435 793 97.0 0 MIPNIVRGSDPAGLVRYLFGKGRRNEHTDQHLVCASGDMFPSFDMDGKPAASYAEIGRRF DRRYRVRERKDDPFPPDMRGKNNPEREHGRKRVWHCSLAIKAGHGILTDQEWEAIIRDYL TRMNIIDGDDDQGVTWLAVRHGLSANGNDHVHIMVQLAADDGWINPYHDRINAQKSCRRM EKTRPELVELARSDTGTRVSWQYGQWRQWAEWKARNEYGDDEGWDALDGNERSRLVTAVA ASTMPRQYIARIVEACAKASHSEDEFIRRARREGFSIDPRLRKGTAKDSFTDPGQVVGYR ITWRSTDGWTERFNAFELGDDMRLKRLRDDWADDARSRSLAVQEWRAAMENRPPFLDDGR ERHLENLSTHDMERLVSEAFCIAASLNNAADDDEYRAAMREGLHTFDMLRERYGIAPEYG LWSMVASDEENRPRR >gi|316915672|gb|ADCN01000029.1| GENE 3 1864 - 3147 666 427 aa, chain - ## HITS:1 COG:hipA KEGG:ns NR:ns ## COG: hipA COG3550 # Protein_GI_number: 16129466 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Escherichia coli K12 # 1 310 1 335 440 115 31.0 1e-25 MRELHAWENGHHVGVFSEDDEERISFAYDANEGLPISLSLPRTGGWRDQAPRNFLDNLLP DNPNVRQAMREHLNASSAGVFDLLDRVDATGGLVFSLSPEPPIPSPTLRLISDSQIANEI DRIERTRNYWWDEDSHCRFSLGGAQGKFTLSRVDGKWYWPDMMLPSTHIVKPKPHDLPEA TKVELATMRLSELCGIDTPARGEITAQRKTAYIVERFDRRLEEGRIVRLRQEDFLQALGL PTRDKYDPSADDCLDLLQRIDASGSLSYRWLERLAFNTSSANSDAHAKNYSLILDPASGI RLSPQYDAVATRYWPEFNWELTMPLNEDHAFAEHTTPQDWEDLATRHGLDGSRVADMARR MAGKVLAGISESCEGLDARMADRLNACWTKANESIEPIMPGDEPANSLDPASALPDSLGF PSSGRTI >gi|316915672|gb|ADCN01000029.1| GENE 4 3144 - 3458 354 104 aa, chain - ## HITS:1 COG:no KEGG:BLD_0360 NR:ns ## KEGG: BLD_0360 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 104 1 104 104 189 100.0 2e-47 MAHVTLDLSKYDALTAYKGLPDEKEENPARFFPDTSSVRRCVRERMSVMGLDAAELARRA GVPLSSAEELVETGLTSIRYVYRMFDLLHIRTETLPSAYAGRLL >gi|316915672|gb|ADCN01000029.1| GENE 5 3561 - 4694 1253 377 aa, chain - ## HITS:1 COG:no KEGG:BLD_0361 NR:ns ## KEGG: BLD_0361 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 377 1 377 377 620 99.0 1e-176 MAQTDPEDGFDQIMVQSWNSVAQQLRTLHNELSGDRARRRERAERAVQNERYEQTRRQQQ SIRLEQWEMDNRERLNKGFESTLNATVLADGDGWRKMRDSSLLQGWMVADQLEGNDPGYR RQIIEAKARLKDEWSKRHPETHIDAAADQLTNHVNITYTDQSPALQATLNAFNTAGVPVD LQRVEDAQAFQAAHGDDATFFVDSRLTGQWTGYDHDRIVDAVMCAPVNGVDDAASRISFL KDQGLPESSHADNKATGDEPSTISEVERTENADAAPIVETPTPVREHTKPAADERKPASG PEPETTGGGDLTTGEPDGYEEMPLDLNEPEEWNGPDPFGEYSPAMESSMNPTDQPIPDQA NVSTPQILQPETNGNAR >gi|316915672|gb|ADCN01000029.1| GENE 6 4681 - 5634 896 317 aa, chain - ## HITS:1 COG:no KEGG:BLD_0362 NR:ns ## KEGG: BLD_0362 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 317 1 317 317 585 98.0 1e-166 MSEHTSNTTSGPDGEEWERAVGAARTLLSSDCGWLELFTRAILEEKGVPYGKGLPNPEAP HIPEDKEIEEETMPGQGEPTPTAPEVPAGRHAAEPIRSGIPADAGETGNGYENPPEDATD RDDTPPKAGAEESDTRILPVPKGKTDLGRDESGDLDPAQARDVSGQFGARMRRSETYYPN LAAFVERFVANVFCYHQSASVNMQWVSDWWRYPALVFPLDAMWRAYENARKAPGQMMIFY IQAASMLDRVFDKDRGIVASLDCKQNLTRKGEPLPCERPNRAWREPILETLSVPAAGGKE NKETTITPTRRRNNGSN >gi|316915672|gb|ADCN01000029.1| GENE 7 5634 - 7442 1904 602 aa, chain - ## HITS:1 COG:no KEGG:BLD_0363 NR:ns ## KEGG: BLD_0363 # Name: virD4 # Def: type IV secretory pathway VirD4 component # Organism: B.longum_DJO10A # Pathway: not_defined # 1 602 1 602 602 1170 99.0 0 MADVDPKLQSNRVKDLGGTVRPSRKIELAIIVAVSLILTTFALVCSHAGHPFQIFALMYL VSGQWSLTAGQWALAVAVLVVLAVACGVGAWLIASKAVPWATGAKARTRVDVYAPAMGHG EAVEKVTRQRAEAMASRLIEADRYRKGMSPGYPLGLNIVDNTSMYTSWEDMAIVLAGPRS GKSLCYAIPAVLSAPGPCLATSNKGDILDVTAPIRRLDHPNGEIWTFDPERIADPNRKSA PWVWDLIASVQSIADAKRIADCWRYASGQPQTGGDDFFPGTAAQQLADYLFAAHLGGRSV SDVFRWCSNERDTSPADILSEYPRYAGIASRVSSVIALTPETRSGVFGSLQTMVAFLADP EIIDWIDPHRDTNGNIDERRGLFDPYEFATSEDTLYLLSAQGRPSTALTASLTAVVAFTA FQRAQSEFTGNNRRLPVPLCCVLDEAANICRWPELADVYSYFGSAGIPIMTIWQNPDQGR AAFGETNFGSLFNNANITVYLGGIKDAKFLGEISQLVGQREIVRGSVNIDGTGRRSVNNS IQKENILDVSDLTEWPVGRALLLASQSRAQIVKTLPWTGNRQWADALTQAKAKAREEQRK AA >gi|316915672|gb|ADCN01000029.1| GENE 8 7523 - 8164 610 213 aa, chain - ## HITS:1 COG:no KEGG:BL1480 NR:ns ## KEGG: BL1480 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 213 1 213 213 354 99.0 9e-97 MPQSMQVVRGLLAANPDYWPAKTNADGTTSSAYLRATVYEDRPRVRQKDGSYTDNPLGPV RTTVKFWGQAAELLHGMDFRQGDAVVATGRMGDPDAFISQKDGKAYARPVVIGDSMQIDS IVSQRIQLARERKRQNKEQAGAVADAGRTDPWTDQVDASRGEYVGDGVPRTFNGEPFEPL SGYPTPGAAPAPADPAAPDFLSTPSDFTTGNAR >gi|316915672|gb|ADCN01000029.1| GENE 9 8266 - 9300 991 344 aa, chain - ## HITS:1 COG:no KEGG:BL1481 NR:ns ## KEGG: BL1481 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 344 1 344 344 636 99.0 0 MPLENTDAEERITRETMIGWIEHWGESYDDVRPDDGAMRLANRIIEYNAATETIEALRNP DAVYDELASILQPVLSSMDGTYFAGSEWFAGEVDRMEADRINGEQPEETDGLASEEPRIP FIVESEATAADTDEPPLDELITAATHEYLDSGMTYDGFSEHVRTTWRNAAAYDWSKLMAE PRSTGEWSSDANRLAVLGVMMQFAPESTCMMIASDILAENAPLSLPALRERINTPDGMVN TDLLFSRLIDNGTTPDPARIDMAMGILGPLEANAPTDACYRIIGLKAMLSLAMGDGEKAR ELAEQAIGYDASDRFASSVLDRLPETDPAMEVTNVWENGGHLGR >gi|316915672|gb|ADCN01000029.1| GENE 10 9405 - 9884 588 159 aa, chain - ## HITS:1 COG:no KEGG:BL1482 NR:ns ## KEGG: BL1482 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 159 48 206 206 317 98.0 1e-85 MNDAALLDSLHAALRNPDLAWYTEFHAGESIVAGYLDSLTDPYDDDAIQVPEGWFRYSVV TREGDHALPWMEHWNEYEYSITHHIDWNGKGFTPYDLYCTQDLTGMIADGSLASIREDAR TIFKDRPLTDDYLFANSIWPEPELLGLVDDLTGRTGRNL >gi|316915672|gb|ADCN01000029.1| GENE 11 9895 - 10245 325 116 aa, chain - ## HITS:1 COG:no KEGG:BLD_0367 NR:ns ## KEGG: BLD_0367 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 114 1 114 121 205 100.0 4e-52 MTDHLATGMKRMIRAVARSASLFDRLGERSRLLRLTGNRSTLDFRPAEHGASSWDFEMSI TPTEPKPYGNAETREPVWRETVDSATYGESRARVAHAVETFRIYDNTGILPETENR >gi|316915672|gb|ADCN01000029.1| GENE 12 10260 - 11819 1663 519 aa, chain - ## HITS:1 COG:no KEGG:BLD_0368 NR:ns ## KEGG: BLD_0368 # Name: not_defined # Def: hypothetical ATPase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 519 14 532 532 1035 99.0 0 MPSATATDPVARMESMLLTPLKAKPDEPVPPVPWRGKRSRGGGYAALMPTIDEFFGTSNQ VCGGFWPFGTDMALPAEGVPVGRSLMTGAGVCCDPISWFKAGIIKQPSMFLLGLPAIGKS TFVRREVLGLSALGMNAIIPGDLKPDYASLVNMLGGQVIRLGAGIGVVNPLDPGDLHYAL QRLEGKARKDLTDYYNDTRAALMEVLLTIMRTGREADDVGGARGVTARESDILSVAVRVL HDRHGGDPQPPVIADLRDLLREGPDEVRMAAVWDDPENDELYRAQVRGLLADLHGFSNRM TKFGRLFGDQTTARIDLSRPVDFDISALAQSGDDVVAAVLATTWTSAFAAKNAADVLAEE GLQPRRNHVIIMDEMHRALRASPLMVEKLDLLTRLNRQWGVGQIMITHTFKDLMCMETPA QNTKARGFVERSEIKVLGALSRIEVDRYLRGECGLPVSRREEDMLEDWATPVNFGSDASH KGLGRFLIKLGGLPGIPINVEMCPLEKSGFNDTNLKWHA >gi|316915672|gb|ADCN01000029.1| GENE 13 11873 - 13360 1365 495 aa, chain - ## HITS:1 COG:no KEGG:BLD_0369 NR:ns ## KEGG: BLD_0369 # Name: not_defined # Def: putative membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 495 1 495 495 917 99.0 0 MASNTTYGDWMRPMPGGIRNIGIPLTIAGMGVLTCTLLVSMASVVAAIAILVVGMGVILV LAIRDREHRNMVDRAVEKRTWMAAQRTGANLYRSGLLAPIDGGKAMLPGILSRVVLTSAL DGLGREFCLVRHSHTGEYSLLLSCQPQGASLADDDVEDSYVASWAGLMESLASEAGVTQL AVTVDTAPDSGVRFRRTLSKRIVEDAPELAARAMAQIMDQYAAGGASNDVTLTLTFRYTD RDGKYLEAGEAARRISLLLPSIREQIAQAGGGAARALGMEEITRMVRVAYDPAAQETIEE SDEPPYIAWEDCGPLMHEAGWSHYSHDSGLSRTWEMVDPPQSNVTADTLTRLLSPLADCD RKRVTVLYRMLPPDKTMFMAEQNRQKAANQVSQEKRATVRSMSQIGKANRQAVETNQGAV MVFFGMLVTVTVSRGEQESQRLEAASRAVEQAAGGAKIDLRPCYGAQDTGFAASLPLGLN VRSYTPAGPLGRLLS >gi|316915672|gb|ADCN01000029.1| GENE 14 13385 - 15379 1976 664 aa, chain - ## HITS:1 COG:no KEGG:BL1485 NR:ns ## KEGG: BL1485 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 664 1 664 664 1119 97.0 0 MKGIRRIRQRLCALLLALVCLAGLAACGGPDFGSFSKELTFGDKQVSDTQTTYVMKIPEG RLGDLIGPSQIQWVIDQYGDPPAHTGVVAVGTKKAAKDLLRKSPELQCRALENTYQEESS DEGKWEYKDSSCRKQRKLSWLEKTLWNMYQVQSDSTIEWLSTSRNTLVAADDTVSTLQAN ATPDYDSWFAPVNRYLRIAQGVLVAAAAISLIVLSARIVWNIGQGGEGRLLDRIGWILLG VLLGSSCASIALTFFSRSSGGNPGLPSWTPGGGTTFFLSDYIRMQVDPFLIIAAVCGVIA AGWKLVTQQEGRDLIPLGKAFMWAILSAVCLAGLVNTFQATFDTWTADVLRSASGMMNDA WESKSLAASSFFNLGAPVAIVLTIVMWICGLISKIFAYFRAGMLPILVGVAPMWAAMSWM ETGKQAFAKTIGWLAAFLAYKPVAALVMATGSAIMATAGPGDDSQAITLMLTLSVIILLP AMIRVIVPAVQSSVGGGGGGILPSILGMGVAVAGAGVRKAMGGKGGRKGGGDGRGEASPD GAKPGAGRGLAGLLSGLGRNGGKPQGANGGGRHAKPLEGNPTGGEPQNTGDQPQGANRKG SDGKPQGANGNGAGSPVPPAPDGASPDPSGGNRPQGANGDAGGFAREGAPDGADRSTTRK GKTF >gi|316915672|gb|ADCN01000029.1| GENE 15 15389 - 15691 546 100 aa, chain - ## HITS:1 COG:no KEGG:BLD_0371 NR:ns ## KEGG: BLD_0371 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 100 1 100 100 179 100.0 2e-44 MLHETCVILAETLSDPTPCLPPGFSGPVSTALGWVKALSLVIGVVALVRIGVHILRQQGD GVPDRDDTFDKLVNWVIGIFLGAGAVAILAALGLSVTASC >gi|316915672|gb|ADCN01000029.1| GENE 16 15729 - 16211 431 160 aa, chain - ## HITS:1 COG:no KEGG:BLD_0372 NR:ns ## KEGG: BLD_0372 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 160 1 160 160 283 99.0 1e-75 MPQLTTLIPSFAAPVTDRVWLVGAHGGAGCTTIRHSDPERFADAGRALPVSQDPSMPSRI ILCAMGTGRGLESLRALLADQSAGLFGASILLGAAITDPVPRMPRPLVAARIQLSSAVRV WRLPHIKGLELDGFPRRYPAAYSRLVKDVDAMPRATAHVG >gi|316915672|gb|ADCN01000029.1| GENE 17 16225 - 17463 1036 412 aa, chain - ## HITS:1 COG:no KEGG:BLD_0373 NR:ns ## KEGG: BLD_0373 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 11 412 1 400 400 456 98.0 1e-127 MNTSGTDPWEMGPIIAAGTAVAIDTAREPEPERRPPAEPEPEPGPGPGLEPDARCVDDAG SEDRANPAVDPWEIGPLPSASNPVGNDIPADAPASEPQHVGGAVEPADLADTIDLTPVGD RDAAMPVREWRRMATTAGGILLAACVTVAGMSAWRSHESATAARELEQATADCATAHAAA KKAERKLAEYLDGDRLAQAKAVTADKLADPETLETLDKLAEQYSEGERIPACAATDTETA NATTSKLQAIEKKHTGNLSRLKKAAGAVFSSRLAHTVEQGERLYSSSEGKVQDEYSRALL RASIDKRDEKAITDAMDKVNASIDAKTKADEERKAQEEAAAAAAAQAQSTPAPQQYSYTP SGSASGSGSGPTGGGYHSSGGSAGSTGGSASPGWSVPANPDPSQLPGTDPSL >gi|316915672|gb|ADCN01000029.1| GENE 18 17460 - 18098 620 212 aa, chain - ## HITS:1 COG:no KEGG:BLD_0374 NR:ns ## KEGG: BLD_0374 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 212 1 212 212 392 99.0 1e-108 MADRQTALAVFDFLDSLRAGQYRIGADAEKDHATAGLLASLSGDTGLRDAVCAKLISPGL ERARFLMVAEHDPRALPLFASGQVKPWYQADYNVREIANSEFHQDIPALLWRLSNTIPDS ARREGMLEAAAYMSFMQGDPEAAFTGHLGRLAAVSPEGEVTRCLMDAHEHGQHPAWVMER RQLRERQADAADGMAATAPDRPSLRQRLFPNR >gi|316915672|gb|ADCN01000029.1| GENE 19 18421 - 23229 6985 1602 aa, chain - ## HITS:1 COG:no KEGG:BL1489 NR:ns ## KEGG: BL1489 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 1602 1 1603 1603 2764 97.0 0 MNFGRKMMKAGVAAVAAIATLGAGGVVASTAFAGGGGGNQPGTGGDLAAVQFWQYKDDAS GAWGPATSLDSVRAAMNNAGVTLQGNGVTKAQAALDQARTECETGFQRRHPGEGNGDCRV VAVGAVPAVIGGNYIYNGSGAASPTGTGGWYDNWNTYVAPRTYQYGSTVYLTSNPFDDDP SNSVDAIMRRNVEASSKPSIVVIVLDKYQPAPPTYHLSVSTQAAEMSGQAGDTKDASDTI TLSSDGSKTENVNGTATLHWRGIDGTEKTVAKQFTASNKGSATVSASFKEMDASWESWPA GKRWWDVDVAKQGDMAEAVSHKGENDGKESGEKTTTPPEKWLTNGAGQTVQDGNDSIASG SLYTAHIKAHSNASGKFWIYDTIDTRDVVIGGTEQDDVSKVTVTDANGNIVPADISIDDS IDGKRVVKAHATAPHSGLYTLNVPQSAKPTGGDYEINDGSVACWNGDNGTGSLADCQTGN SDSVGKVTPTPDKVWVLDESGALVAEDKQWTNQQGVDQKTFLVGDQVGVVVNGSIPSHLL NPLASYSITDDLTGSNQWIDWKSGKVFVDGKDETANFTIAIDRKAGTATATAKASYIAKT MFRNSASKVRFYLTGTIKKGATEGKKIQLTNKAYEKWNNETRPTNEPPVFVWTPNPNKAW AMKVDGKWQLTVDPAKTDKVGGDDKYYRLGDEVAAVISGTLPTGLGRVPEIAWTDDFANV DSILDLKDTSNIKVYEQDTTDEANAGVNDLNKTGRDVTDQFDITAEGTKVTVSAKDSYEA AQKDLKTAKQISVVIPFDVNFDTVKLLESYGKAEGDELNTCVDPKGDDLDNKGGQTVGGS TVDTNTPKICVTVPPIHKQVIAESSQGGDQSSIDTKTVFPGQTVEYTVRVDPQIPADQAY SVTAIKLSDTYSEYTTANKQTLEITDLGTGGIIPKSAYKVQWDEANHSFEATFAKDWVAA NWKAGSNPRVLLRFEAKVNEDAPTDKTVDNKAALTVNNGVTPSNKVENEPPVIKPSKQDT QKDPTINIDGKTALLGDKVYYRVNIDASRLTDTAYKVWRLGMTDDYDQEYLTLDAKHVEI LDETGRDRTGEFNIQDKDGVLYAFAKTVDTQIPATGETVPGDPQPDDLKAYSEKTDKDYD PLKDPSIDQSLLGHTYQVVMPMTVTKVKDGHTVENTATQVTNDRRDKTNTVTNPLKEINP TKDVTVQVGGDSIDGKSVYLNHTFLYRLDSSILPPDRAYQTVTDWGGTDQLNTEYDQYLG NWAVYASRDLYRDGQMLAARGEKIAGSGFDSSKFGGNLFTVDADDNGKVTADATQTYLDL VSADNEHEAGWVLYLQCKRIAVADEVPNTWTETINGQPRESNKVVTKTPDMTPSIHLEKV DTPTLKQEGQEQADRDDPKQALKMDADNIGITFIITNTSKTDPATGDGAWYKASDLNLDD STIVGDAHVDMDSLTYPADWDTLVLKPGESVSVTGTLKGVKEGETHTDRAIVTGTPLVEC APSNGDPFNDKTDGGEDTDPEYSTGDVTEIDGKQLCADTQTTSNTDDWNGYRAKPLASTG VAVLGLAGGALAVLLAGGSLLVFRKRHYAQGSGRHTAVNAGK >gi|316915672|gb|ADCN01000029.1| GENE 20 23568 - 24566 1004 332 aa, chain - ## HITS:1 COG:no KEGG:BL1490 NR:ns ## KEGG: BL1490 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 322 2 321 331 426 93.0 1e-118 MNENDKTEILEPVETPAENITEPSKDGRKCPKWLPPLVAAVCAVILVAAGIVGWNAYSGA KLAEAKEACAAAADTVRNNANEYNALLNGDAADAAAVRAEQVKDSKTVESLGKELKAMAP EYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVAESKAAKRLDDAKTNLTAK LDEASKLLADSDGKVADNATRDALSNAIDAANGLKDGNDPAKIDGARKTLEDAINGVNAS VQAKTDADAQAAAAAAAAAQAQAQAQSTYNGGSSYSGGAYRRTEGSTSGSNTYRGTTSGG SGPAAAAPKPNLNGAYGCDNSCTGKYDGYYHH >gi|316915672|gb|ADCN01000029.1| GENE 21 24594 - 25505 792 303 aa, chain - ## HITS:1 COG:no KEGG:BLD_0383 NR:ns ## KEGG: BLD_0383 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 303 1 303 303 598 99.0 1e-170 MDAFKAWPGRAESIVISQESYMRCTGGVAPWRRDGDKGPSYYAVCPLCDNPIQIVGLFRR QEESRARRPYGRHHRGDVPGLCRYDEDAYLHCPYADPNHRTDIRARRHPKDQTGRALYGL MRGEFDRVALAWERFSGIHLGPGAARDMLRKWRDDQGWRYYDATYGNLPQMLFFAAGGQN LVKRYIVPDSPLHERLKGVPRVRFTPTRSRYVQVDKAGPGFLTLDFLLYARRIEWDGQHM NETFRLRGLLGRDDGQQAFDDLTLDVDQDWLPHTADAQPGRDERLLDIARETLQSDAGIP ADQ >gi|316915672|gb|ADCN01000029.1| GENE 22 25534 - 25764 322 76 aa, chain - ## HITS:1 COG:no KEGG:BLD_0384 NR:ns ## KEGG: BLD_0384 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 76 1 76 76 139 100.0 2e-32 MTDDIEERAALARRGIMDHSDCEECTEDWTFLMRQGRREFPLGLRTVLACLAFAEREGAV PELPADWWVRINRRYR >gi|316915672|gb|ADCN01000029.1| GENE 23 25764 - 26018 310 84 aa, chain - ## HITS:1 COG:no KEGG:BLD_0385 NR:ns ## KEGG: BLD_0385 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 84 1 84 84 139 98.0 2e-32 MEINKPMTTRNMLASTLTDYKKPVKLPKITVELDPMLKKRFKAEAVRRGTTIRDMLTAWI ECDCPPLDAADARAEAKQDGRRSG >gi|316915672|gb|ADCN01000029.1| GENE 24 26096 - 26689 803 197 aa, chain - ## HITS:1 COG:slr0110 KEGG:ns NR:ns ## COG: slr0110 COG1192 # Protein_GI_number: 16331850 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Synechocystis # 3 156 2 156 211 62 31.0 4e-10 MTTNTKTVAFVNLKGGVGKTTSAIGTAEALARLGHTVTVRDADPSGAATLWAHKALSAGR PLPFGVEVVNRFTVAAPAEEEWVLIDTPPLQTDLVEAAVDAADLVLLVTTTGPIDLERML ETIRQINKPSSVLLTQTRYGTRSLRHAEEFLAENGLAHCRETIPYKEAMRLAPDEGRFPS ASGYGLIAKELSDAFNA >gi|316915672|gb|ADCN01000029.1| GENE 25 26825 - 27301 484 158 aa, chain - ## HITS:1 COG:no KEGG:BLD_0387 NR:ns ## KEGG: BLD_0387 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 158 1 158 158 276 98.0 2e-73 MFLKGECADFPDSWSDRMWGPDDLPNQRTQYELRRAAVRICEACPVRAECLAFGIMVRDQ YGIYGGLPLRARRQVLKTAREAGFRFDPDDPNAERRLARYIRENPEIVAAARERECKRRK TEQRNARQQRWRATTHSTGKAKAPAAATHTPPLQDTLF >gi|316915672|gb|ADCN01000029.1| GENE 26 27292 - 28695 956 467 aa, chain - ## HITS:1 COG:no KEGG:BL1494 NR:ns ## KEGG: BL1494 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 467 1 472 472 810 93.0 0 MSVNAVDWALRFAPVDARHNGAARVLMCLANVADDEGRNAHPTHRKLAAWCKCSVSTVKR HLSWLEANGLIRRGDQRQAGHFSEWHRPVVWDLCLGNRLELDPDFFDSNDIDATRGGRPA TESPGPHVNPDSDTESDDNHGSHVDRGYGDGDTGKPQLTGEPRFTAVTPPPAHLVSYSTS LVRNNPSAPTGHLPASGETSPDDDGIREDGSWDDAAGAEPPSSESAGTGSDAEAVCRTMA DGLRAMPPMPVPEPLARPGKRELDAARRLIARHGMPLVLAVTEWVSLPPSKTDKGDASGK PYDGFWRRTLTGPRSLARHWDQVCLQMADDPHGRRLLAEHGILADKGETAQPPSAESTPK VPNYGIPDNLDRRVWKLLDPYDFDAGNDGFEAPRTLRRLLKRVPANDAEGERNAVLEALR AGRAFLDAVSREKDDGFGQRKPAETGPASVRFGFIGGRGPKEVPACS >gi|316915672|gb|ADCN01000029.1| GENE 27 28692 - 28892 198 66 aa, chain - ## HITS:1 COG:no KEGG:BLD_0389 NR:ns ## KEGG: BLD_0389 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 66 1 66 66 104 93.0 8e-22 MRAHETHERAGRHGGFPPHGFASGLLAACPSDGSHDFYLSMMLDVPVPRVPMLRARLQDS RRGGAA >gi|316915672|gb|ADCN01000029.1| GENE 28 28879 - 29043 206 54 aa, chain - ## HITS:1 COG:no KEGG:BLD_0390 NR:ns ## KEGG: BLD_0390 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 54 1 54 54 75 96.0 5e-13 MMHLILVIAVVIILAASYLLTFALCRAATRRDMLEARWREESAGSVSEESHESA >gi|316915672|gb|ADCN01000029.1| GENE 29 29040 - 29186 104 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELVILLFVVLAVACFGLLLPFLRLAVGIVLLAVRLLASLARSMGAGR >gi|316915672|gb|ADCN01000029.1| GENE 30 29174 - 29551 194 125 aa, chain - ## HITS:1 COG:no KEGG:BLD_0392 NR:ns ## KEGG: BLD_0392 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 125 3 127 127 224 97.0 8e-58 MTVGARSLDNEERSNFRDYMSLLSLSVDASMTVREVMAVAYLIGRRDALRDVRNASSPAR TVNRRLIHGGPSDCVFNRGYEAGAGMVSDEIDALMRDVEALSGDDAVFSMLRHPSVSGGD EWWNW >gi|316915672|gb|ADCN01000029.1| GENE 31 29554 - 29895 200 113 aa, chain - ## HITS:1 COG:no KEGG:BLD_0393 NR:ns ## KEGG: BLD_0393 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 113 1 113 113 196 94.0 3e-49 MSSVTEVAVPTSDFDGNAPVNGSRCMASTFSESLYWRRSARRYELAGLAAWMLAALSCVV FLAILLAARNLLLPGFALVPVACGLACVGCWCDRNSRDAWDFAFWSLHVEVRQ >gi|316915672|gb|ADCN01000029.1| GENE 32 30070 - 30291 342 73 aa, chain - ## HITS:1 COG:no KEGG:BLD_0394 NR:ns ## KEGG: BLD_0394 # Name: not_defined # Def: Xre-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 5 70 3 68 71 79 56.0 3e-14 MASPMKQWRKDHDVTQAALAADMGQSASTLSQKENGHLGWQQKDLLFLYDHYGLSADFVL GINNLPSCEKAIT >gi|316915672|gb|ADCN01000029.1| GENE 33 30181 - 30384 129 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPVLFLRKSGSGLAHVGSKGSLSHIVILPPLFHRRSHIYSFPKVFSLTNVFRIHFGLTKV KSQTRVS >gi|316915672|gb|ADCN01000029.1| GENE 34 30421 - 30843 424 140 aa, chain + ## HITS:1 COG:no KEGG:BLD_0395 NR:ns ## KEGG: BLD_0395 # Name: vapI # Def: plasmid maintenance system antidote protein # Organism: B.longum_DJO10A # Pathway: not_defined # 16 140 14 121 121 73 42.0 2e-12 MRTLLSADQANQAPPDTLGEYTERVLNYNVDARRKQLKRTQKSLMQPMGVTSEGAVSQRL KGITHWSLISAVNVAQSLDTSIEKLLDDSAMKMEIERQAVALRVQLDQINQMTGNKKATG DTPVASGELLRLGLNQRPSD >gi|316915672|gb|ADCN01000029.1| GENE 35 31158 - 31370 132 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFRVTVSPHRHVVRPSAAADPCHNRCHAVTAEHQNSCDCSHWVRILRRLFRFTDSSICQ ADTSSSTVSR >gi|316915672|gb|ADCN01000029.1| GENE 36 31502 - 32191 286 229 aa, chain + ## HITS:1 COG:Rv2891 KEGG:ns NR:ns ## COG: Rv2891 COG0739 # Protein_GI_number: 15610028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Mycobacterium tuberculosis H37Rv # 95 228 38 176 249 89 38.0 4e-18 MNAPLLFDWRRDEARRASRRRQQARQRAQERQRRMDAIIALAAVIGLLLALGVGLASTPQ HVAHADTAVTGDAAYTVEDFTDMSDLAWRNGNQCESRFDWPVDDPQVEQQFERPINPWAP GHRGVDLVAEQGTVILSPQAGTVSFAGKVAGKDVVSVRHRGGVTSTFEPAVTELSVGDTI SRRQPVGIVEGSSDHCEDRCLHWGLKRGTADYLDPQQYAGSRKIVLKPS >gi|316915672|gb|ADCN01000029.1| GENE 37 32269 - 33900 2119 543 aa, chain - ## HITS:1 COG:no KEGG:BLD_0397 NR:ns ## KEGG: BLD_0397 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 543 1 543 543 870 99.0 0 MVFARRSTTLLAAIIASCAMVLSLTACTSDNKTVVDGQTTVTSNSAGGVAVFTPSDGITL NQQTPLNKWAKLVPDLAKALADAGFKKGDINHTTSDSLDKQSRAIQDFVVDHLSNNTTDD SGIAIAPDNMTLLVAPVVEADASTRQYGDYVSQNLSTNDVTDEGATSDGESSEDDSSKDD SSNTESDSTASDEQAQAVDRLVSSLKLAKESGMHVVLLGNSIEGYKPDAFVKFSDAQTIG KLQAEKMVSKLKLDKASKDNPKYIEVLLPYTAMDEKGNANDSTFAQEAFRGIWQVLGSYY QKGVVESPSGTLDGKSTENDWQAVAYDAAKEGSTAKVLDKRLAKTDGQSTLTRIDGIITM NDYIASEVVKELDDLGYTGSAADINPQITISGIVGNITGKKDLSRDAVPDPIKSPENDNA NDSSSSDDDADEDTSASDKDRDSQWPLVTGYGAYVSNIPSIVNGKQWMTGMEDRQTIATD IAQACAKLNKDEALNSMPSIRNSEVGGVKKIPTISEPLLAVSASNLKSALIDPGYISLAD AGL >gi|316915672|gb|ADCN01000029.1| GENE 38 34149 - 35369 1783 406 aa, chain - ## HITS:1 COG:MT3442 KEGG:ns NR:ns ## COG: MT3442 COG0538 # Protein_GI_number: 15842935 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Mycobacterium tuberculosis CDC1551 # 3 405 6 408 409 627 74.0 1e-180 MAKIKVEGTVVELDGDEMTRVIWKDIKDRLILPYLDVNLDYYDLGIEHRDETDDQVTIDA AHAIQKHHVGVKCATITPDEARVKEFGLKKMWKSPNGTIRNILGGTIFREPIVMSNVPRL VPGWTKPIVVARHAFGDQYKATDFKVPGAGQLTVTFTPDDGSEPIQHVVYNYGEDGGVAQ VQYNVNDSIRGFARACFNYGLMRHYPVYLSTKNTILKAYDGQFKDIFAEVFETEYKDRYA EAGLTYEHRLIDDMVASSLKWHGGYIWACKNYDGDVQSDSVAQGFGSLGLMTSVLMTPDG QTVEAEAAHGTVTRHYRRWQKGEKTSTNPIASIFAWTGGLKHRADLDGTPEVRHFAKTLE KVIVDTVEGGQMTKDLAMLIGPDEPWLDTDGFMNALDENLAKALAE >gi|316915672|gb|ADCN01000029.1| GENE 39 35497 - 36621 1834 374 aa, chain + ## HITS:1 COG:slr1722 KEGG:ns NR:ns ## COG: slr1722 COG0516 # Protein_GI_number: 16330504 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Synechocystis # 5 370 3 368 387 317 46.0 3e-86 MSQEIEIGLGKKGRLGYALDDVAIVPSRRTRDPEDVSTSWQIDAYEFDVPVIGAPMDSVT SPATAIAMGKMGALGVLDLEGLWTRYEDPTPLLDEIAGLPADQATERIQQIYAEPVKPEL ITQRLHEIRAAGVTVAGALSPQRTQQFYSTVVDAGVDLFVIRGTVVSAEHVSSGQEPLNL KKFIYDLDVPVIVGGASNYTAALHLMRTGAAGVLVGFGGGAVSATRQTIGVQAPMATAIA DVAEARRDYMDESGGRYVQVIADGGMGDSGSFVKALALGADAVMLGAPLARATEAPGKGT HWGSEARHQTLPRGYRTTVGTVGPLEQVLFGPSHQADGKTNFIGALKRAMASTGYVDVKN FQRCGMVVNPYSAR >gi|316915672|gb|ADCN01000029.1| GENE 40 36783 - 37274 451 163 aa, chain + ## HITS:1 COG:no KEGG:BLD_0400 NR:ns ## KEGG: BLD_0400 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 163 1 163 163 342 100.0 2e-93 MEYSGFFHGTYQYGPLPSYDGFIVVELSDRPVRYHIQPTFIGGLNAKECHSMAMAACRIA CTSADAIRGKLSVAHLNRAMTKPCLDRLQTMQYLLGIHMVTHPELKAKFCYLPTVPTLID GMITGKDTLEMAVFMTIGQENLRVNLKLKYIGSRWMCIYADLG >gi|316915672|gb|ADCN01000029.1| GENE 41 37365 - 39452 2698 695 aa, chain + ## HITS:1 COG:ML0887 KEGG:ns NR:ns ## COG: ML0887 COG1022 # Protein_GI_number: 15827409 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Mycobacterium leprae # 1 596 1 594 600 417 38.0 1e-116 MREHVEEPRYVTTDDDTVYSLLSKRAARTPDDIIAEWQDDNTHQWRSATATEMLSRVREV AKGLLGLGVKAGTMVLIYSPTCYEWGVADFACAAIGAVVVPVYETDSARQTAGIVEEVDP AIAFAGDFQRAQTLEQIRVNHPGMKYVFNFKADGLDAVVDFGHGVSDETLDAAIARIKAD DLLTVVYTSGSTGKPKGAMLSNRNYTHIVLNGYEILRGMLYDDNRLLLFLPLAHCFARYI QYVCIGGCGVVGYIPDAKRLLADIRSFKPTYLLGVPRVFEKVYNAASQKAGAGIQGHIFA QSVKHFVKWSKDEQAGRGHSFIERMRHSFYMATVGKSIRSALGPNLKWLACGGAPLNVDL AHFFNGMNDITFIQGYGMTETAAPMLVNWEDDNEIGSVGKPGPGMGVRLGEDDEIELTGP NVFLGYYKQPELTAQTMTADGWIKTGDLGRIDDRGFTFITGRKKDIIITAGGKNISPAPM EDVIDTCPIVAHAVVVGDGKPFVSALIELDPEMLHSWLEGQGLNADMTLAEASDNDAVRA FIQQYIDQANANVSRAESVRKFAVLDEEFSQEHGTLTPSMKVVRPKVLQRYATVIEEDLY APKPSNKPLPATAKIIDSTLETVKKSSESVKQASEQVKQASEQMKTSVSDSIASVSEKIK KSKAEPEEGETGDSADNAADTGSKPDQPADEKNEE >gi|316915672|gb|ADCN01000029.1| GENE 42 39459 - 39947 602 162 aa, chain + ## HITS:1 COG:Cgl1563 KEGG:ns NR:ns ## COG: Cgl1563 COG0242 # Protein_GI_number: 19552813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Corynebacterium glutamicum # 1 157 1 162 169 128 41.0 4e-30 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS YNIDGKVGYVLNPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNEVVLEG SGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRNRQAK >gi|316915672|gb|ADCN01000029.1| GENE 43 40259 - 41149 1492 296 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23326784|gb|AAN25298.1| 30S ribosomal protein S2 [Bifidobacterium longum NCC2705] # 1 296 1 296 296 579 99 1e-164 MRMARQEPTMKGSNTMAQITMSDMLKAGLHFGHQTRRWNPKMKQFILTQRNGIHIINLFK SLDMIDKAYDFIKTTVAHNGTVLFVGTKKQAQEAIANQATRVNMPYVSERWLGGMLTNFQ TVSKRVNRLKELEEMDFTDVHGSGLTKKELLLLEREKDKLNKQLGGIRNMNRTPSAMFVV DITKEALAVEEAHKLGIPVVAIVDTNADPDTVEYPIPANDDAIRGIELLTSLMADAVAEG LLERSGANKAEGEAAEQPMAAWEKELLTNEAPAEASAEAAAPAAAEGETAEAPKAE >gi|316915672|gb|ADCN01000029.1| GENE 44 41228 - 42079 431 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 283 1 266 283 170 37 1e-41 MAAITAALIKQVREDTGAGMLDVKKALTEAEGDVARAKEIIRAKGIAAAGKREGRKAQEG TIASKVVETANGETGYAVELNSETDFVAKTPKFVEFTEEVLGYAVDADANSADELLEAKA GDTTVKLAVEEAAALFGEHVKVGQFAKISGEHVEVYAHKKSAEMPPSIVAMIATDKAGAA VAHEAALQISAMGAKWLTREDVPADVVESERRVATEKSLAEGKPEKIVPKIVEGRLNAFF KEVVLLEQPFVKDPSKTVGDLFKEVGGNATAFARVEVGKGEEE >gi|316915672|gb|ADCN01000029.1| GENE 45 42253 - 42993 1091 246 aa, chain + ## HITS:1 COG:ML1591 KEGG:ns NR:ns ## COG: ML1591 COG0528 # Protein_GI_number: 15827835 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Mycobacterium leprae # 9 239 50 279 279 272 62.0 4e-73 MTDSDNPRRVLLKLSGEAFGGGKVGIDTQVIRRIAEEIVPAVQQGVQVAIVVGGGNFFRG AELQQAGIDRSRGDYMGMLGTVMNCLALQDFLEQEGQATRVQTAITMGQVAEPYIPLKAI RHLEKGRVVIFGAGAGMPYFSTDTVSIQRSLEIHCDEVLMGKNGVDGVYTADPRKDENAK RFETLSYNRALVDNLAVMDASALSMARDNKKRIRVFGLEEPGNVTRALVGDEIGTLVSTA ESRVAE >gi|316915672|gb|ADCN01000029.1| GENE 46 43070 - 43621 1064 183 aa, chain + ## HITS:1 COG:Cgl1976 KEGG:ns NR:ns ## COG: Cgl1976 COG0233 # Protein_GI_number: 19553226 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Corynebacterium glutamicum # 6 183 8 185 185 179 53.0 2e-45 MSLIDQAKEQMAKTVENTKENFSGIRTGRANPALLNGITVDYYGAPTPIKAVASIGVPEP RTLSVTPFDASQAGAVEKALRNSDLGISPNRDGNVIRLTMPELTEDRRKEYVKLAKGKAE DGKVAVRNIRRKTKETIDKAVKDGEMGEDEGDRLLKDLDKVTKSVTDEIDTLLETKQKEI MEV >gi|316915672|gb|ADCN01000029.1| GENE 47 43644 - 44630 1007 328 aa, chain + ## HITS:1 COG:ML1589 KEGG:ns NR:ns ## COG: ML1589 COG0575 # Protein_GI_number: 15827833 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Mycobacterium leprae # 21 323 32 308 312 110 29.0 3e-24 MERNEQPHEEAEETLDQINKKTGRNMPQAIATGAALVILIVACLLLSVDLFVLLVVVFMI LALWELRVDFATVGLHLPVFMLWLCSSFTLIATYYSPYHLITMSLSIIVSIILVAIAASA KISVGNRLSLAVAGKLSNTDASARLESSFNHEGGEQHHSRLSHVAVSVLTVLYIPLLASC VIISLTFNGHPIAHAIMLVFLPALSDTGGLFAGAWLGKHKLSPRISPKKSVEGLVGSMLF AMAGAFAVFACTYDASKWATRWWVPIVAGILIGAVGTFGDLCASMLKRDIGIKDMGHLLK GHGGVMDRVDSILMSAPFTCALLWITGL >gi|316915672|gb|ADCN01000029.1| GENE 48 44841 - 46010 1477 389 aa, chain + ## HITS:1 COG:Cgl1973 KEGG:ns NR:ns ## COG: Cgl1973 COG0820 # Protein_GI_number: 19553223 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Corynebacterium glutamicum # 32 388 13 364 366 385 55.0 1e-107 MTTQHPDTPETGITPGGTSGAFRDVLSKDHARRGKPPLHFVDMTPEQRIEKAAELGLPKF RVKQLANHYFGHFDVNAAEFTDFPAAKRSEAAAAFFPQLITEVTRQVADEGTTIKTLWKL FDGSLIESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKM MRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGV VPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSI EYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEIL HRAGITATLRDTRGQDIDGACGQLAAKER >gi|316915672|gb|ADCN01000029.1| GENE 49 46011 - 46559 796 182 aa, chain - ## HITS:1 COG:PA4171 KEGG:ns NR:ns ## COG: PA4171 COG0693 # Protein_GI_number: 15599366 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Pseudomonas aeruginosa # 3 182 5 184 187 148 45.0 6e-36 MAVENSKVLIIVNNWGIEETELTRPLRDLKAAGAKVTLAATTLDPCETVQHDRYEGETLT PDARLSDVQAADYDLLVVPGGTCNVDRIRVNEDAITLAQEFAHEGKPIAAICHGAWLLVN AGLVAGKTAAPCRYIAADIENAGGHYVDEQLHVDDANGFKLITSRKPDDLDYFVGAIKDA LK >gi|316915672|gb|ADCN01000029.1| GENE 50 46734 - 47504 1082 256 aa, chain + ## HITS:1 COG:Cgl2041 KEGG:ns NR:ns ## COG: Cgl2041 COG0107 # Protein_GI_number: 19553291 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Corynebacterium glutamicum # 1 256 1 257 258 307 67.0 1e-83 MSLAVRVIPCLDVDAGRVVKGVHFENLKDAGDPVELAAEYYRQGADEITFLDVTASSSHR NTMIDVVSRTAEQVFIPMTVGGGVRTPEDVDSLLRCGADKVGVNTAAINDPSLISRVADR FGNQVLVLSVDARREKGEQHTQSGFEVTTMGGRKSTGIDAIWWVKRAEQLGAGEILLNSM DADGTKEGFDLEMIRAVRKEVKIPIIASGGAGKVEDFPPAIEAGADAVLAASVFHYGILT IADVKAELKKHGYTVR >gi|316915672|gb|ADCN01000029.1| GENE 51 47638 - 48033 565 131 aa, chain + ## HITS:1 COG:MT1641.1 KEGG:ns NR:ns ## COG: MT1641.1 COG0139 # Protein_GI_number: 15841059 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 12 114 3 105 115 135 66.0 2e-32 MTDTTYDNSTELDPRIAARLKRDAKGLVAAVIQQYDTREVLMVGYMNDEALRRTLTTGRV TFWSRSRQEYWRKGDTSGHVQYVKGVSLDCDGDALLVEVDQVGAACHTGKRSCFLEGGPL PVVEGHRPAEQ >gi|316915672|gb|ADCN01000029.1| GENE 52 48114 - 49670 2136 518 aa, chain + ## HITS:1 COG:MT1644 KEGG:ns NR:ns ## COG: MT1644 COG0147 # Protein_GI_number: 15841062 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Mycobacterium tuberculosis CDC1551 # 13 504 6 495 516 426 49.0 1e-119 MSECSVKHLKWGATWPSREQFHELADAGYRVIPIVRRLLADSLTPVGFYERLAGGRSGTF ILESAEYGGTWSRYSFIGVNSMAQLRSNNGQADWLGKVPVGVPVTGDVVEVAHATLKTLK APHVEGLPNLTSGLVGTVGWDAIRHWEPTLRAEAPDETGQPETVLALATDIAVVDHVSGS VWLIANAVNVDDKSTRADAAYNEAVARLDQMQRDAATPAPDESRVNILDETVAQPELRFR TEKSHYEQAVERAKQYIVDGDVFQVVISQRLDIDSPADPFDVYRVLRTLNPSPYMYFMAL TDAQGRDFNVIGSSPETLIKVDNGHAMTFPIAGSRPRGATPEEDEKFAKELLADPKECSE HIMLVDLSRNDLSKVCVPQSVEVVQLMDIKRFSHIMHICSTVTGKVDPSLTAFDVFKSAF PAGTLSGAPKPRAVEIIDELEPADRGIYGGTVGYFDFSGNMDMAIAIRTAFLRDHEASVQ AGAGIVLDSVPATEWQETRNKAEASVESIQIAAQLREL >gi|316915672|gb|ADCN01000029.1| GENE 53 49735 - 49974 122 79 aa, chain - ## HITS:1 COG:no KEGG:BL0688 NR:ns ## KEGG: BL0688 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 79 1 79 79 112 98.0 4e-24 MPVTNTVSYQSPTVHHSEHHADRAQPTLMCPYAAAQLIGKVKNATPGMVIATMAHGIEAA IEAAVSTETDATDIMGETH >gi|316915672|gb|ADCN01000029.1| GENE 54 49986 - 51587 179 533 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 327 518 2 216 245 73 27 2e-12 MAIEVQGLEIQIGARTLLHPTNFHVAKGDKIGLVGRNGAGKTTLTRVITGDMLPTAGKVR VSGKLGYLPQDTHASDPTQTALDRMMSARDIATIINRIRKAEKDMTDPDPDVMSKAMTRY DKAMQDFDKAGGYAAQSEAISMAASLGLPQEVMEQQLGTLSGGQRRRIELARILFSNADT LILDEPTNHLDADSIEWLRGYLKKYEGGFLVISHSTELLDEVVNKVWHLDAQLGQIDMYS LGWKAYLHQRVVDEERRRREREVAEKKADRLMKQGIRLHAKATKAVAAQNMMRRAEKLLE NTSEAQKAEKVADIRFPEPAPCGRTPIMAKDISKAYGSNIVFAGVNLAIDKGSRVVILGY NGAGKTTTLRLLAHIEEPDTGSVEYGHGCKIGYFAQEHDTLDLNATVLENLQHVAPELDN TQARSILGSFLFSGDDAMKPAHVLSGGEKTRLALATLVTSRANVLLLDEPTNNLDPASRE EILKAIAKYEGAIVLVTHDEGAVEALNPERVLLMPDGDEDLWNDSYLELVAEE >gi|316915672|gb|ADCN01000029.1| GENE 55 51631 - 52338 1175 235 aa, chain + ## HITS:1 COG:YPO3351 KEGG:ns NR:ns ## COG: YPO3351 COG1028 # Protein_GI_number: 16123501 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Yersinia pestis # 8 224 17 241 256 72 28.0 8e-13 MPTTTGKKIAIVTGSALGLGYELASQLIANGWLVAGVDFNAERQAELTAQWPDDSYRAFV GDITDEAFVKESVADIATLGHIDLLINNAGQPSFKVPTAYEAADVDKCLKGLKGMILWTV ETLKACGEQNVKIAQIMSTAATRGNANESVYCATKWGEKGYTKSLQAAYKGTSVKVVAVY PGGIDTAFYRDSRDYVSEAKQHTFMQPGPLAEVILFNLINEANLTVTDIEINRNS >gi|316915672|gb|ADCN01000029.1| GENE 56 52409 - 52777 202 122 aa, chain + ## HITS:1 COG:Cgl2834 KEGG:ns NR:ns ## COG: Cgl2834 COG3824 # Protein_GI_number: 19554084 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 122 2 113 114 86 38.0 1e-17 MHISDDEFERAIEQVLDDLPERFARVLENVGIVVADEPNERELATMSNPCGELLGLYEGI PITKRTTGYSGVIPDVITLFKGPHERVCSTQAELRQRIRKTVLHEIGHYFGFDDEYLHSH GY >gi|316915672|gb|ADCN01000029.1| GENE 57 52832 - 53503 888 223 aa, chain - ## HITS:1 COG:no KEGG:BLD_0418 NR:ns ## KEGG: BLD_0418 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 223 1 223 223 423 100.0 1e-117 MTASNTTDSTAFDITDWLGEWESFEHYIDSDDAAIQQTWEAAEQAVLANPKMAPMAARGI RTFWSMACSTTSPENIIHIGYWRVNEPAAESGSTDDAALAIEWFAEDDTSLDTYEYTIDH VIEHGLEGSPTFVFHTTDPAAEDSPFRWLLAINPLPSRKAFAEGGLLSHLHFQYANDLHT LVATDEATGVETLRNPRWYATMCANEGTVEDRCAIIRALHHLQ >gi|316915672|gb|ADCN01000029.1| GENE 58 53500 - 54810 1296 436 aa, chain - ## HITS:1 COG:SPy1787 KEGG:ns NR:ns ## COG: SPy1787 COG1122 # Protein_GI_number: 15675626 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Streptococcus pyogenes M1 GAS # 3 397 77 462 464 275 37.0 2e-73 MPIDRLTPLVGSVFQNPKTQYFNANVTDELAFPAENIGLPAEDINRRITAVAERFGIGHL LHRSIFHLSGGQKQRIAVAAATMLGPRLVVLDEPTSNLDANAIADMRAMIEQMKDEGLTI VIAEHRLAWLNGVADRYVVFDGGHIVQDYEADEFLSLSPGCVAAMGLRALDLQPYRHRIA TLASSPAADECTSALLGTHNLTIGYKGKDGFTRAIPDLRFRAGEITGLMGNNGCGKTTLV RTLTGLIKPVSGRIELNGVPAKPRDLTRAGFLVMQDVNYQLFSDSVREELLIGLDETDAG ITAQANQVMADLDLAAFVERHPMSLSGGQKQRVAIGSALMCGKDLIILDEPTSGLDRYHM EQVGELLRQLASQGKAILVVTHDEELAAGWCDRIVNLGADDSGNNGSHASNPDASSPNPN ASTNFATASTHERNAQ >gi|316915672|gb|ADCN01000029.1| GENE 59 54920 - 55877 674 319 aa, chain + ## HITS:1 COG:Cgl0182 KEGG:ns NR:ns ## COG: Cgl0182 COG2826 # Protein_GI_number: 19551432 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Corynebacterium glutamicum # 4 318 203 498 536 151 34.0 1e-36 MGQQYSHLSSEERILIEKLHCEQHLSVRKIAEEIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSDRLRAWVLDSLRRGWSPE LIEGRLKAQYAGDPSMRISHECLCQWIYAKPQRALDLRQYLARGRKRRTRKKGRKAKGPR IPMRVPIADRPEAVGSRKGFGHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSAS ATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGMLTYFADPYSSWQRGSNENR NGRIRRYLPKGTSFEDLTQ Prediction of potential genes in microbial genomes Time: Fri May 13 13:10:12 2011 Seq name: gi|316915658|gb|ADCN01000030.1| Bifidobacterium sp. 12_1_47BFAA cont1.30, whole genome shotgun sequence Length of sequence - 18261 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 10, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 327 248 ## Blon_1662 integrase, catalytic region 2 2 Op 1 . - CDS 455 - 757 559 ## BL1750 exonuclease VII, small subunit 3 2 Op 2 . - CDS 807 - 2177 1301 ## COG1570 Exonuclease VII, large subunit - Prom 2208 - 2267 4.0 + Prom 2483 - 2542 1.8 4 3 Op 1 12/0.000 + CDS 2645 - 5053 3678 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 5 3 Op 2 . + CDS 5201 - 5929 771 ## COG0602 Organic radical activating enzymes + Prom 5992 - 6051 1.6 6 4 Tu 1 . + CDS 6157 - 11271 7257 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) + Term 11351 - 11383 -0.6 7 5 Tu 1 . + CDS 11436 - 12713 1516 ## COG3572 Gamma-glutamylcysteine synthetase + Term 12752 - 12803 3.2 + Prom 12722 - 12781 3.4 8 6 Tu 1 . + CDS 12866 - 13504 88 ## BLD_1933 AcrR-type transcriptional regulator + Term 13543 - 13601 3.6 + Prom 13614 - 13673 3.7 9 7 Tu 1 . + CDS 13701 - 16064 3017 ## COG1472 Beta-glucosidase-related glycosidases + Term 16113 - 16154 5.5 10 8 Op 1 6/0.000 - CDS 16104 - 16439 282 ## COG3293 Transposase and inactivated derivatives 11 8 Op 2 . - CDS 16480 - 16914 205 ## COG3293 Transposase and inactivated derivatives - Prom 16979 - 17038 4.0 + Prom 16959 - 17018 3.8 12 9 Tu 1 . + CDS 17204 - 17887 785 ## COG0657 Esterase/lipase + Term 17937 - 17991 -0.5 13 10 Tu 1 . - CDS 17880 - 18260 402 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316915658|gb|ADCN01000030.1| GENE 1 3 - 327 248 108 aa, chain - ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 108 1 108 368 178 97.0 4e-44 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAW >gi|316915658|gb|ADCN01000030.1| GENE 2 455 - 757 559 100 aa, chain - ## HITS:1 COG:no KEGG:BL1750 NR:ns ## KEGG: BL1750 # Name: xseB # Def: exonuclease VII, small subunit # Organism: B.longum # Pathway: Mismatch repair [PATH:blo03430] # 1 100 1 100 100 129 100.0 4e-29 MTENATSTDMNTPATSLTDKERELIAQMPYEEARDKLIQAVQALETGGLNLDQSMRQWEI GEALAKRAQGLLNDVRAKLDQAQAEQAANEATAGTQSNLD >gi|316915658|gb|ADCN01000030.1| GENE 3 807 - 2177 1301 456 aa, chain - ## HITS:1 COG:MT1139 KEGG:ns NR:ns ## COG: MT1139 COG1570 # Protein_GI_number: 15840545 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Mycobacterium tuberculosis CDC1551 # 56 455 3 412 415 243 37.0 5e-64 MTTAMGYSSTGRPPTAASLASSGFEPGQGTFAPDRGAINLPNEPRPIDQLPARAAETTAQ NPWPVSVLSQKFYGAVERWPSAWVTGQITQINTRRAGSAYITLRDDFEDIAMEVNGFGRF AAAASQFVQGDRVVIHGKPNLWMKRTSLSLRGDTILKVGAGGSLKAMIDELRKQLKGEGL FDADHKLPLPEFPKTIGLICAPQARAEGDVITNVNLRWPSVTFKVVHVHVQGEQCPAEVV QAIAQLDADPSVDVIIVARGGGSFEDLIGFSDERVVRAAYACTTPLISSIGHEDDWTLLD LVADLRASTPTDAAKRVVPDVREQSQLIEGAIDRMRLRVRSRVENEIRLIEGYANRPSLT QPHTMLEPHQRLIDDSLQRLDIGLRRIVDDAQLTVERAHASLTALSPQSTLNRGYAVVQS ADGHVLDDASQVSPGDGITVTLKKGVITATTTSATA >gi|316915658|gb|ADCN01000030.1| GENE 4 2645 - 5053 3678 802 aa, chain + ## HITS:1 COG:L70400 KEGG:ns NR:ns ## COG: L70400 COG1328 # Protein_GI_number: 15672255 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Lactococcus lactis # 26 792 17 728 747 868 56.0 0 MGAQVLEETVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAFGDLNKEVGPEE DAMIRGFANQVEGEIKGRYTGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRA KATDVNEAVARFINHDPTLIHENANKDSNVYSTQRDLLAGAVSKAAAFNMLPPAVSNAHM KGDIHFHDADYSPFTAQSNCSLPNFWDMLANGFTLGNAPMASPKSIAIAATQITQIMKDV ASSQYGGQTANRADEHLAQYAKKDYEKFLEEARETIPDGMPVEFARRQVESAKKNEPAKL HFGSREPLPMDTPFHTDVDELEQEREILAKIRTRKAIYDAMQTMEYQINSNRVSNGQTPF VTVGFGLGTDWFSREVQRAILLNRIRGLGKEHHTAIFPKLVFTVKHGVNADPGDPNYDLK QLALESATKRMYPDVVFYENIVKITGSFKAPMGCRSFLQGWINPETGKDEEDGRMNLGVV TVNVPRIAIESHGDKARFWKLFDERMEVAHQALQFRIMRCKEATPVNAPTLFRFGAFGRL GANDNVDQLFKNERATVSLGYIGLAETTAVFYGKNWIRDHGWDPEGKEFALSIVKRMNEL CKQWSKAEGYHYSVYSTPAESLTDRFNRMDREKFGRIEGVTDHDFYTNSFHYPVWLQPTP MEKLSYEKDFPYYASGGFINYCEYPCLQDNPKALEAVWDYAYNIGIGYLGTNTPIDHCFV CGFQGDFEPTEEGFKCPECGNSNPDKCNVTKRTCGYLGSPVQRPMVHGRHEEIAHRVKHM SGETGRVTLDDGTTREWFEETK >gi|316915658|gb|ADCN01000030.1| GENE 5 5201 - 5929 771 242 aa, chain + ## HITS:1 COG:SPy2105 KEGG:ns NR:ns ## COG: SPy2105 COG0602 # Protein_GI_number: 15675857 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Streptococcus pyogenes M1 GAS # 34 232 7 202 204 245 59.0 5e-65 MPELHTTKPEPKRHDFAAGETGRGPSVPSNGLANDPKAGQWDGRRMSKRMIADYKTFIVT DGEGVRNSLYVSGCPFHCVDCFNASIWDFQAGHEYTQKLEDKIIEDLKAPWVQGITFLGG EPFLNTPVLVPLAQRIRQEFGHTKDIWSWTGYTWEELMRLGETPDKLELLHLIDILVDGR YLKDQKDSLLQFRGSRNQRILDVSKSLEAGEPVIWAKLHDQERDIPEIYLKDREAGEGQQ AS >gi|316915658|gb|ADCN01000030.1| GENE 6 6157 - 11271 7257 1704 aa, chain + ## HITS:1 COG:CAC2401_1 KEGG:ns NR:ns ## COG: CAC2401_1 COG1924 # Protein_GI_number: 15895667 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Clostridium acetobutylicum # 19 743 5 663 663 672 48.0 0 MVDIATDASVKPASHPKPLRVGLDIGSTTVKAVVLDQSDSLGDTLFSDYRRHHANVRATV AGLLVDIHKKLVDLGRGDEPIRLSITGSGGLALADNLHVPFIQEVIAETEAIDKEYPQAD VIIELGGEDAKITYLKPTPEQRMNGSCAGGTGAFIDQMSTLLDTDAAGLNEMAKSYENLY PIASRCGVFAKTDLQPLINDGAAKPDLAASIFTAVATQTIAGLASGRPIHGTVIFLGGPL FFMSELRAAFQRALEGKVDEFIVPTDAHLYVAYGSALQADTDSDDQGHHFEAYTCDEILK RLDELKNLPSNTPTMPPLFPTEADREDFNKRHHKEHIHIGTLEGAHGPHFLGIDAGSTTI KATLVNDDREIVWSSYANNEGSPLTAAINIVKKIQSELPEGAWIARSCATGYGEGLITTG LHLDEGVVETMAHYRGAEMVSPGVTAVIDIGGQDMKYLAITDGVIDSIAVNEACSSGCGS FLQTFAMSMGLTIQEFTQKALASTHPVDLGSRCTVFMNSSVKQAQKEGASIEDIAAGLCY SVVRNALYKVIKLRDSGELGDTVVVQGGTFLNDAVLRAFELLTERQVTRPNIAGLMGAFG AALTARMHYQDEADHLDVVVKADGSEEQSEAEPAPKSGPKAAAFKKTEPAKPEVHVVVVD GVAHTASSILTGEALDNMSMTTERDVCKLCQNHCKLTITTFSDGSRFVTGNRCERGGDAK KKRSDRPNLYDYKYKRCFAYRRLTDKAATRGEIGIPRALNMYENYPFWFTLLTSLGFKVM ISGRSSHELFETGIESIASENICYPAKLVHGHIKWLLDKGVKTIFYPCVSYEENLVPNTD NHYNCPVVANYPLVVGANMPELREDDVRYMHPYFNLANHELMVDRIVEEFAWANVTREEA ETAVKAAYAEDKVFKHDVQQEGLTALAYMKEHNCRGIVLAGRPYHIDPEINHGIPETICS LGMVVLSEDSICELQPGEKLNLTEFLSEGEADPRSKNAAGFRHVGDRTVTKMPLRVTNQW AYHSRLYAAAHFVALYPGLELVQLNSFGCGLDAITTDQVAEILADKADVYTLLKIDEVSN LGAAKIRLRSLKAAVEEREANKAREEAAAKALEDKQAAAERAAEEAKVKAESDLEAAKAV LAEAQAAVEAAQKKVDAEAKAVQDAVKTSQATAAKTVQGPKSIGFRRTGSTAPTPGRQIL LDTTMAANPNLTKSMREASKRAAERDLQAAVAHKNGTSDGTTGVANAKNAKKSGHNNATM SRYAHREKFVKDMKKNYTIVGPQMSPIHMSLVEAVIRSGGYKFDILKHASRGDVETGLKY VNNDACYPAIMVVGQLIDAILEGKYDPDHVALAITQTGGMCRATNYFGLIRKALVDAGYP QIPVIAISTQGLEDNPGFKATPPLLHRAIKALILGDLLMKCLYRVRPYEVEKGSANKLYE LWDTIVRETIEHHGYSKTAAKTPSIKKGYLPYNVLAKEIVKSFDALPLRDIPRKVRVGVV GEILVKYQPDANNHVVDVIESQDCEAVVPGIMEFMTTRPYITDWNEKNLGMGGNKTLYAL MRKGLDLYNAPIKAALATSHGKFKQDEPMPELVKKAAEVTSIGVQAGEGWLLTAEILELI EQGCPNVICAQPFACLPNHVTGRGMFGKIRRLHPEANIVSIDYDPGASEANQLNRIKLMI AAAKKAHNAKFAETGEPQGFTSAD >gi|316915658|gb|ADCN01000030.1| GENE 7 11436 - 12713 1516 425 aa, chain + ## HITS:1 COG:BMEII0528 KEGG:ns NR:ns ## COG: BMEII0528 COG3572 # Protein_GI_number: 17988873 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Brucella melitensis # 20 399 14 389 457 138 28.0 3e-32 MVTPRISYAHLLAKPNPKHVESLLKFFENGRSQRGTGGFGVEIEHLPVHNSDDTAVSYYE PNGIEALLKRLAPYYDEEKEYWENGHLVGLSRSGVAVSLEPGGQVETSIGILKKPSDLNT LYSKFRRELDPILDDLDFRLVNYGYQPKSSFADVPVNPKDRYDAMTDYLGRVGQFGPCMM RCSASTQVSIDYVDERDSIEKLRLGTVIGPILAYFFRNTPYFEGETNPWPLLRQRMWDYL DFQRTNVLPGLFDPRYGWEDYAIDVLSTPLMFADLTHTPEAVASGASPKELHRPAFRENA GEVYPDRELNPYEINHIISTHFNDVRLKNFIELRHWDSLPIERAERLTEIVSSLFYVPEH RERLESYFEGISEEEVFEAKANIQAHGREASPYGQPLDFWKEFLGLEGLLSDIPGDLKHP DVFQE >gi|316915658|gb|ADCN01000030.1| GENE 8 12866 - 13504 88 212 aa, chain + ## HITS:1 COG:no KEGG:BLD_1933 NR:ns ## KEGG: BLD_1933 # Name: not_defined # Def: AcrR-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 212 32 243 243 444 99.0 1e-124 MTAGNSLQHKRVRKSPGERRQEILDAAVRLISERGYNGTSVQDVADAVGVTKQGVLRYFP SKDNLLAAVYHENYNTFGSVEDFMASGLPGSGPDDFRLPAYLRFLVHCNSTRPMLVQLFS ILQVESFNPAHPLHDEFANRRDSIWQYYSTYNWNLPSEFTSFEEVRPTLRHALEIMDGVQ LRWLRGPAIDLCDEWADLEPAIFPSPIWDGYR >gi|316915658|gb|ADCN01000030.1| GENE 9 13701 - 16064 3017 787 aa, chain + ## HITS:1 COG:TM0076 KEGG:ns NR:ns ## COG: TM0076 COG1472 # Protein_GI_number: 15642851 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Thermotoga maritima # 16 786 4 758 778 409 36.0 1e-114 MTDNTTPAATAETLPYKNPDLPAGERIADLLSRMTLEEKVGQMMQLDARGGDLEDLIVNK HVGSILHTSPEDLSRAAKTVNEKTRLGIPLIIGDDCIHGYSFWPGATIFPSQLGMAVSWD PDKVKAAGRATAEEVSCTGVHWTFSPVLCIARDTRWGRVDETFGEDPMLIGELASAMVKG YQGGAKAGEALPKNAILACAKHFAGYSETQGGRDASEADLSHRKLESWFLPPFERVAKEG CGTFMLGYESIEGVPVTFNKWLLTDKLRGAWKYNGTLITDWDNIGRSVWEQHVKPDYVHA AADAVKAGNDLVMTTPQFYEGAIEAVKTGLLDESLIDDAVSRILALKFRLGLFEDPRLPD AERIKAVIGSAEHQQINLELVRESIALLRNDGALPFAANKVKRIAVVGPLADDAQNQLGD WTGNSGQVSWMPDGQPRDMITTVLDGLTQLTADDCEVVYSRGANVIDLVPDPAGEFYPDG QPRPKIGVSAAVDQALIDEAVANARQSDLIVAVVGDVVQLVGETCSTATLELLGGQNALL DALAAVSRETGKPMVTVLISSKPQVLPASIVGEYGVFAKRVSDPETGTGSILWAPNPGMR GGQAIAEIILGLTNPSGRLPITFPRHAGQLPVYYNQIRGQHGDRYADLTQDPAFAFGEGL SYTTFAYGEPTIVGGASNADGTFAETDTVHAEITLTNTGERAGVEIVQAYIGDIVTSYSW TDRELKAFQRVALEPGETKTVAFEIPVANCTIVDPDANRIVEPGEFELLIGHSSRREDLK RTTFTVA >gi|316915658|gb|ADCN01000030.1| GENE 10 16104 - 16439 282 111 aa, chain - ## HITS:1 COG:mll8100 KEGG:ns NR:ns ## COG: mll8100 COG3293 # Protein_GI_number: 13476707 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 3 86 167 250 254 69 40.0 1e-12 MGRAYEGDPTRLPAESFGLTPVVPPKRNRTAPWDYDREAYKGRNMVERVFNRMKHHRKAA TRYDRLDETFLANLQLIPIAVYLKKHSQKPNQCKHTPVKRLPAQQQREAFW >gi|316915658|gb|ADCN01000030.1| GENE 11 16480 - 16914 205 144 aa, chain - ## HITS:1 COG:CC0928 KEGG:ns NR:ns ## COG: CC0928 COG3293 # Protein_GI_number: 16125180 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Caulobacter vibrioides # 15 114 13 111 123 82 42.0 3e-16 MRTPGYGITPDRFVRVAHLLPRQCGNVAVDNHTFVNALLWMCRTGAPWRDLPECYGKWVT VYQRFDRWSGNGATGCLSTALQEERIIGVEIRVPAMDSTGGKVHQHAAGAPKKGAPGPSA SPGEGGTPKSAWYPTARARSSGSI >gi|316915658|gb|ADCN01000030.1| GENE 12 17204 - 17887 785 227 aa, chain + ## HITS:1 COG:alr0079 KEGG:ns NR:ns ## COG: alr0079 COG0657 # Protein_GI_number: 17227575 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Nostoc sp. PCC 7120 # 56 181 150 270 411 82 36.0 8e-16 MSVEISAENRQEYQAWTPVEEDLEGLPKNIHDLILQMRVDCSTTDRNRMPYYGADDDIDK FTNIPYIDDGTRAHQLDIYIPHDAIMLAVHNLPVYIDVHGGGFVYGYKELNRNFCIALAR RGFAVISISYRVYPQADFLGQLQDVNAAIGWLQNHADEYPIDPNRMGITGDSAGGCLSLY TLAIQSDPELLDQEKLGFKQTNLRFGALVSGKFNLSEYVDDTPPMSI >gi|316915658|gb|ADCN01000030.1| GENE 13 17880 - 18260 402 126 aa, chain - ## HITS:1 COG:SMa0977 KEGG:ns NR:ns ## COG: SMa0977 COG2826 # Protein_GI_number: 16262981 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Sinorhizobium meliloti # 10 113 226 329 333 96 45.0 1e-20 TAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYFADPYSSWQRGSN ENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEAFADELLELQDQQ GCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 13:10:25 2011 Seq name: gi|316915638|gb|ADCN01000031.1| Bifidobacterium sp. 12_1_47BFAA cont1.31, whole genome shotgun sequence Length of sequence - 18299 bp Number of predicted genes - 22, with homology - 18 Number of transcription units - 11, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 533 395 ## Blon_0983 phage integrase family protein + Term 545 - 571 -0.6 - Term 495 - 548 0.3 2 2 Op 1 9/0.000 - CDS 636 - 1421 909 ## COG1484 DNA replication protein 3 2 Op 2 . - CDS 1418 - 2920 624 ## COG4584 Transposase and inactivated derivatives 4 3 Tu 1 . + CDS 3427 - 3948 334 ## COG0582 Integrase - Term 3959 - 4023 9.7 5 4 Tu 1 . - CDS 4124 - 4192 70 ## - Prom 4356 - 4415 2.1 + Prom 4130 - 4189 3.2 6 5 Tu 1 . + CDS 4231 - 5547 491 ## 7 6 Op 1 . - CDS 5763 - 6467 243 ## Cpha266_1908 type II site-specific deoxyribonuclease (EC:3.1.21.4) 8 6 Op 2 . - CDS 6464 - 8059 537 ## COG1002 Type II restriction enzyme, methylase subunits - Prom 8089 - 8148 1.5 9 7 Op 1 . - CDS 8336 - 9649 1139 ## BLJ_1147 HipA domain-containing protein 10 7 Op 2 . - CDS 9691 - 9999 343 ## 11 7 Op 3 . - CDS 10054 - 11028 923 ## COG3177 Uncharacterized conserved protein 12 7 Op 4 . - CDS 11105 - 11545 525 ## gi|225352315|ref|ZP_03743338.1| hypothetical protein BIFPSEUDO_03931 13 7 Op 5 . - CDS 11567 - 11980 555 ## gi|291457785|ref|ZP_06597175.1| toxin-antitoxin system, antitoxin component, Xre family - Prom 12021 - 12080 2.8 - Term 11993 - 12024 0.0 14 8 Tu 1 . - CDS 12112 - 12720 567 ## BDP_0920 hypothetical protein 15 9 Op 1 . - CDS 12981 - 13073 134 ## 16 9 Op 2 . - CDS 13070 - 15292 2361 ## COG0550 Topoisomerase IA 17 9 Op 3 . - CDS 15312 - 15749 588 ## gi|291457781|ref|ZP_06597171.1| putative Gas vesicle protein 18 10 Op 1 . + CDS 16178 - 16480 280 ## gi|291457780|ref|ZP_06597170.1| conserved hypothetical protein 19 10 Op 2 . + CDS 16495 - 16836 327 ## gi|225352324|ref|ZP_03743347.1| hypothetical protein BIFPSEUDO_03940 20 11 Op 1 . + CDS 17216 - 17503 336 ## Ppha_0193 hypothetical protein 21 11 Op 2 . + CDS 17520 - 17768 425 ## Ctha_1344 hypothetical protein 22 11 Op 3 . + CDS 17865 - 18297 157 ## BLD_0318 transposase Predicted protein(s) >gi|316915638|gb|ADCN01000031.1| GENE 1 3 - 533 395 176 aa, chain + ## HITS:1 COG:no KEGG:Blon_0983 NR:ns ## KEGG: Blon_0983 # Name: not_defined # Def: phage integrase family protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 176 6 181 447 168 49.0 6e-41 RKRRKWGSVIVRRDADGNPTSFQARYVNPLDPPKKVGRNFGLEYETEAYRWLDEERYLVT LHNKGIRQWVHPSQRGANTMPTFREYSKDYFDKYRKPDGSKLSGRSNRCNGIVLRRLNET FGDTPLDRITRQMVDEWYANARDTLTAWTFEQAARTLKRIMLAAANEQADGTPPVF >gi|316915638|gb|ADCN01000031.1| GENE 2 636 - 1421 909 261 aa, chain - ## HITS:1 COG:RSc0248 KEGG:ns NR:ns ## COG: RSc0248 COG1484 # Protein_GI_number: 17544967 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Ralstonia solanacearum # 52 253 39 242 281 155 43.0 7e-38 MSVRPDPVIPETRRRRASTTEKSERILKMSRSLTLTRSVLAGTLAEATPNQLDFIERWFT AELDSRERSKRLRLLKQAGFPADKTLDGYDWTNLKMPADWGRAQLENLDFVAGCEDLVLY GPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKARLLI IDEFGYLPIDEEGSRLLFQIISDSYETRSIIYTTNIEFSGWGRVLGDKNMAAALIDRTVH HGRLIRFEGRSYRSEHALMTK >gi|316915638|gb|ADCN01000031.1| GENE 3 1418 - 2920 624 500 aa, chain - ## HITS:1 COG:BH3998 KEGG:ns NR:ns ## COG: BH3998 COG4584 # Protein_GI_number: 15616560 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 14 427 11 419 499 200 32.0 5e-51 MAIPMPIVQDIRRLDRQGMSRAQIARRLHVDRGTVAKYADMEDCSPKPKADRRYGSKIDP YAHLVDEWLEADRLLPRKQRHTIRRVHDRLLAETDYDGEYSTTMRYVHRWREANRGVPDR EGYVRLEWAAGSMQVDFGMARARIAGEMADVHCLVASLPYSNMRLCVALPGENAECLCHG LMLVFEHIGGVPPVIVMDNATGAGRRNAKGEVALTGVFSAFVAHYRLEVRFCNPYSGNEK GSVENAVGFLRRNLMVPPMRAESYGQLSRLLLERCDGLARDSYCPRLLDVPVAEVFDEER AALMPLPSTAFDPVRWESRTADKYGLVDIDSNRYLAGPDSARSRVLAAIRWDTVTLTSPA TGELFAEYPRQYGRSRNVEDPALVLPRLAVKPRAWRESSIRPDVPDDIRAWLDSMDEKTL RESLKAIGDACRAAGFDPAMQACGEILRSNRDMGLHADSLTPIALRMRDGEWEYPGGIEE PDLSGYDRFITGTDDGGEER >gi|316915638|gb|ADCN01000031.1| GENE 4 3427 - 3948 334 173 aa, chain + ## HITS:1 COG:MT2735 KEGG:ns NR:ns ## COG: MT2735 COG0582 # Protein_GI_number: 15842199 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mycobacterium tuberculosis CDC1551 # 1 115 266 378 386 59 32.0 4e-09 MPIPKPLVPLIEAHISRFCKDRKPDTMLFHSPMLDDWLLPPTTIERTFRMAREKIGRPDI TFHSLRATHATMLVLEGGTMRETMDDLGHTSLTVAVDSYQRVVREHHRDTVELLAYRYMP SNDPTVIRTVIDQKERQIDKLRDEVERLRKILLERDTGIPTDPDTVLPKNQNR >gi|316915638|gb|ADCN01000031.1| GENE 5 4124 - 4192 70 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHNTNTVDHLFGKGRTVMDSEG >gi|316915638|gb|ADCN01000031.1| GENE 6 4231 - 5547 491 438 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGIKETFGLISEAISTMAESGSDWPYTLAGALLLLTVVAHCAIKISTWIGDNAYSRQQK RLSRLSSLREAKKSHPDVLLEAEIDAEKAKVNRYDAWCRWRQEKAQKHRNELIENKTSRR RDSFFFTLFSLLLLLILWAIPFLLKCSGLLSPEDGSALSNIKEENLPSVVFLLAFLVLPT IWIPVYIVAYRLYRAIREANNPISIWGFSWMSASMLFSAMIAVSIETATKYTAKLLAREL MLVAIAALFVPLSFAAGYVIDYIIDRWRFANRPNLEDHYHDSLSSRRNRYILAIFNFVFC LCLSILFEVFYFESTINNIYVLVVFVVILSLAAFLSIVASLLCIISFICEDEFALHGHHV IFHNGQKRKDKIIGYGLSAKSTYYQPSSRRRELIFEGWNTQEDGHGVSIRNADDFDAMVP KDKCGEIKLYAQWKSATR >gi|316915638|gb|ADCN01000031.1| GENE 7 5763 - 6467 243 234 aa, chain - ## HITS:1 COG:no KEGG:Cpha266_1908 NR:ns ## KEGG: Cpha266_1908 # Name: not_defined # Def: type II site-specific deoxyribonuclease (EC:3.1.21.4) # Organism: C.phaeobacteroides # Pathway: not_defined # 7 222 14 230 245 172 41.0 1e-41 MRFDIEDAILGMYDSIERAREAQAAAGHSDQGARQGITSGKHLDPIAAIIRDDLINAGFH PDEVYDQGRMCTLPGWFRPTKNWDLLALDNGELVSAIELKSINSSFGNNANNRAEESIGS AFDAHTAFDEHLLGSSSIPPVMGYVMIVHDCPDSRIVGRGVRSAHFPIDPDFEGASYLDR FLLLCDRLRRKSLYQAVWLVFANPEDGVAYEPSALLSYDKFIANIVMALGVHRA >gi|316915638|gb|ADCN01000031.1| GENE 8 6464 - 8059 537 531 aa, chain - ## HITS:1 COG:CAC2309 KEGG:ns NR:ns ## COG: CAC2309 COG1002 # Protein_GI_number: 15895576 # Func_class: V Defense mechanisms # Function: Type II restriction enzyme, methylase subunits # Organism: Clostridium acetobutylicum # 7 217 57 273 581 63 24.0 8e-10 MASTHHGVVYTKKWVVDLILDVAGYVPGTGISDKVIIEPSCGCGAFLTVIAGRLADDAIA VGKGWTSLGNAIRAYDIDSASIETARKAAVEALMTRGCPAIQARELCEQWIVHGDFILDD VPAADFIVGNPPYVRAVEIDRTKRSLYVKRLSSVTTGCDLYVSFFDRGLDTLKVGGTLCF ICADRWLQNKYGTLLRSRMGTDCDLVSLVRMHGVDAFDDEVDAYPAVTTVRKGVAADHLK FVNCAPEFNEADATAVLDWLMDDEPDLVGERFEAFEIDKPTGDRMYPLGNHDLVRFVSQA CERLPKLEEAGVKLGIGIATGCDDVFLTEDDDLVESDRMVPIFYMRDHRRGNDDRQRWLV NPWNDDGTLANLDKYPRLKTYLETNKERLSRRYVAKKNKTAWYRTIDKLTPGLLDRDLLL MPDMAAQPDPILSHGKYPHHNCYWITSDEWDLEVLGGLLMADTTRRFIDALGVKMRGGTL RFQAQYLRLVHMPKYIQISDTNKLGLSRAFNEKDRALATKFAEAAYKEATE >gi|316915638|gb|ADCN01000031.1| GENE 9 8336 - 9649 1139 437 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1147 NR:ns ## KEGG: BLJ_1147 # Name: not_defined # Def: HipA domain-containing protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 435 1 435 437 750 85.0 0 MPRKLIMCGDHPVLAFEYEPASGRACSSGEVLDPRRLPLEFTTHGKSALYARRIDEWWKS RAIPSTRDGIRRVLDSLGASSTGELLDRTYGLSLSDQYWVKREDDPVEWKDVNFFDNPFD EALGEILLTSYSSSHDISLNAPDVSTGGDLPKRWTINKNTGRRLLVKSGRTGQEPMNEVI ASKLCARLGVPAVPYSLARSGNRLVCTCEDMLTSHEELVSAWQVLQSIKTTNGLNSHDQW IHAAAGCGADERAVRDATDDWLVVDYLMRNTDRHYNNFGLIRDIETLEVRPAPIYDTGAS LWSGELDVDGRDWFAKPFYTATGKPSALRQLRLVEDWSRFDLDALSDWPDEVAHELSRMR MFAPERLDAIRDQLTKHIGTIRTIRESKALRTSGPIRNRTNLLDRFGDTLRKNLAWQDGD VKSAGIDYKGPRHHMGH >gi|316915638|gb|ADCN01000031.1| GENE 10 9691 - 9999 343 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADIIGKFIERHGEDVLEALLVDQTTRRNIICADSEYSDHGYGFDCMDEIAIPQLTGKYA GLIRTRADKALESQSHRKRDDDEQGDEAGGDDGDAPTFDSRL >gi|316915638|gb|ADCN01000031.1| GENE 11 10054 - 11028 923 324 aa, chain - ## HITS:1 COG:MA2133 KEGG:ns NR:ns ## COG: MA2133 COG3177 # Protein_GI_number: 20090976 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 28 242 28 236 326 94 32.0 3e-19 MANPELSQRIQELPEELLGLEREPGIAERLRRIDALKDRARALDPLDGVEDMALADYDRD WLVRYTYNSNAIEGSTLTLEDTSLVLEGEFVPSDSPARYVFAARGVADGMAYVREYAREG RRLDEELVRRVHEVTALDLQPFARGTFRPYGYLARITATRVKTADPLEIRDDLRALIDGL DASGAHPLLRTAGFHAMFENIHPFMDGNGRTGRQLLNFMLLKHGYRPVAIKYDAKRDYAR SLETWQVDGDPVAFCSVFLDCVEQEEHAFIDLVEGLRRKPDAIRSKTDLLDRFGDTLRKN LDRQDGDGKSIGTDRKGPARHMGR >gi|316915638|gb|ADCN01000031.1| GENE 12 11105 - 11545 525 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|225352315|ref|ZP_03743338.1| ## NR: gi|225352315|ref|ZP_03743338.1| hypothetical protein BIFPSEUDO_03931 [Bifidobacterium pseudocatenulatum DSM 20438] # 1 146 1 146 146 206 97.0 3e-52 MFGLYMLAIYLGIAIIAAGFVALLVVVALAVGLVTHPIRTLALVFHKLAALAAGLALILA LIVWFWYDHSKPDFAPCFWGSIGVIVASILIRAFAEWILERPTRAERRAMKRAAAQETGR VTMRMPVSEEVAAAFESTRDGRRASL >gi|316915638|gb|ADCN01000031.1| GENE 13 11567 - 11980 555 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457785|ref|ZP_06597175.1| ## NR: gi|291457785|ref|ZP_06597175.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] # 1 137 1 137 137 194 85.0 1e-48 MAKEDWSEAKAWMRATRERIGMTQHDAAVLANLTVDMVKKYESEKYRIQPSGRMREMLEH YLAEHRRAVAAIMERHRGDERAVLSFSRVSNLPEGLPDWVRAEESVKRRAAAVREAAVLL EAEGVAVDYTYMPEETE >gi|316915638|gb|ADCN01000031.1| GENE 14 12112 - 12720 567 202 aa, chain - ## HITS:1 COG:no KEGG:BDP_0920 NR:ns ## KEGG: BDP_0920 # Name: not_defined # Def: hypothetical protein # Organism: B.dentium # Pathway: not_defined # 1 197 8 208 235 246 69.0 4e-64 MTEFTFAPGEKNIIGDRFSPSVIIFWLKTSIAASSTRIQYTTPNTLFGLIPLGADTKTIP LRNVASVDTSTKFNLGSLVWGVVFLLIGLGCLDSSVAVALVLILVAASNLANTMSAQLDF VNQAGGRNSVKVSILEKDKLMQLAQNIQRLVFADVEGQRHQESMDMAQKQYTAQTRSVLI QQQMLDQQRKATADDNPSMPTE >gi|316915638|gb|ADCN01000031.1| GENE 15 12981 - 13073 134 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEFTYATGETGIVVNRLVTELTLVEPSHP >gi|316915638|gb|ADCN01000031.1| GENE 16 13070 - 15292 2361 740 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 3 680 5 653 709 359 34.0 1e-98 MRLIIAEKHSVGQAIAQAVGGHMEKHDGYVQVGDDLVTWAQGHLVDLAAPDEYKNHDWGK WSLDTLPIDPTPDWQWKVSRDKGADRQYKVVAGLMRRGDIDMLVDACDPDREGEAIFRRI VTHVGVSKPMRRLWVASLEEDAIRDALASMKDETEYQGLADSAMIRAKADWLIGMNASRA YSLVYNARFTVGRVQTPTLAMIVDRDRQIAGHVSRPYWKVVAPMGGWKLSGERLDKREDA EMLLRIVNSDDFAFSIFKAERKQQHDAPPRLYDLTGLQKDMSRLHGLTAARTLAALQSLY EKKLATYPRTDSQYITHDDLDTLRGLTEGDRLTAGFIEPAAKPERPHLELTVNDAKVAGH TAILPTMQADKAALDELGDDERLVLTRVVRRMWEAVGDDYVHDVTNVVANIDPHWCEKHP DEGRLLPESECRFTSRSDQPVSLGWHAIEHAAPQEDHGEEDEAVGNIIPANLTDGVSIAP VPQGGATLSEGKTKPPKPFTEATLLAAMEHASRWVEDKDLKAALDDDESHSGGIGTPATR ADVIEKLIRTGYVDRKGKQLRSTEQGRSLIDVVAPKLKDVALTADMERRLSEVEHGQTDA AEIETEFRDLAAGIPADAQIAVRQDHVQARKRNTESFGPCPRCGKPVIKTGKVFQCSTNR REKQSDGTWRTTEGCGWRAWTTIAGKTITDTTMRGLLAGRKVSLKGFTSRKGSGFDAAIL IDKDKGIAFDFNDNKERKRK >gi|316915638|gb|ADCN01000031.1| GENE 17 15312 - 15749 588 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457781|ref|ZP_06597171.1| ## NR: gi|291457781|ref|ZP_06597171.1| putative Gas vesicle protein [Bifidobacterium breve DSM 20213] # 1 145 11 153 153 180 90.0 3e-44 MASDYVDDFLRDERESFKRKETAAKKFDNRLDNFRKSAQALRDAARQFEEAFPGMSRTMI ADKLAMTGTEKSVAFDAKGELVAAPAGRKTVSAEPTVAPAADAATDPETTGSDVQEADDE PAPQEPAAEPDTSDDGRPAWASGNY >gi|316915638|gb|ADCN01000031.1| GENE 18 16178 - 16480 280 100 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291457780|ref|ZP_06597170.1| ## NR: gi|291457780|ref|ZP_06597170.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] # 1 100 1 100 100 180 94.0 3e-44 MQMEPMELQHVVFETDGGRIDAMWSDVRLHEHDITDGWHCYAVRGGDGGWPPCSIEKTVW VNHAGDIITPDDLDPLLERNGWMLVIRDWWFTDEPFGRAE >gi|316915638|gb|ADCN01000031.1| GENE 19 16495 - 16836 327 113 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|225352324|ref|ZP_03743347.1| ## NR: gi|225352324|ref|ZP_03743347.1| hypothetical protein BIFPSEUDO_03940 [Bifidobacterium pseudocatenulatum DSM 20438] # 1 113 7 119 119 179 97.0 4e-44 MKEKNRAEEWFRAKHDELAETAQANLAAHDLEPGQEAYHLDSLHYATAEQMEAICPTGID FDRYATLANGSVGYDEADAHWADAAWWDEQARTMWDEVDDIPDDGLYWTSVED >gi|316915638|gb|ADCN01000031.1| GENE 20 17216 - 17503 336 95 aa, chain + ## HITS:1 COG:no KEGG:Ppha_0193 NR:ns ## KEGG: Ppha_0193 # Name: not_defined # Def: hypothetical protein # Organism: P.phaeoclathratiforme # Pathway: not_defined # 11 95 1 89 89 92 51.0 3e-18 MEDNENKEADMPVISMFFGIIITMNADDHVPPHIHARYQGHEASFTFDGNLLKGDLPRKQ RKLVEAWVLLHAEELEADWELAFNLEHPFRIDPLR >gi|316915638|gb|ADCN01000031.1| GENE 21 17520 - 17768 425 82 aa, chain + ## HITS:1 COG:no KEGG:Ctha_1344 NR:ns ## KEGG: Ctha_1344 # Name: not_defined # Def: hypothetical protein # Organism: C.thalassium # Pathway: not_defined # 5 79 3 75 83 62 40.0 6e-09 MTIDYSIKVTQCEPMPGYKLKVTCSDGATGIFDMSRYIDRGMFKPLKDPQTFDRVRLAFG VPSWPGDIDIAAERVRSDMQII >gi|316915638|gb|ADCN01000031.1| GENE 22 17865 - 18297 157 144 aa, chain + ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 134 1 134 171 158 67.0 5e-38 MSRKRRGSYDVEYMRIVVGLIRDGIGAKSLARRLGVSKETTREWLLSYRIGGEAALMGER EGNRKYDYETKLAAVLDHLERGMSRPEVMERYGIASRTCLKQWCQDYRRGGPEALRPKPK GRPKGAKSKPKPAPRANSSRGGER Prediction of potential genes in microbial genomes Time: Fri May 13 13:11:58 2011 Seq name: gi|316915607|gb|ADCN01000032.1| Bifidobacterium sp. 12_1_47BFAA cont1.32, whole genome shotgun sequence Length of sequence - 36663 bp Number of predicted genes - 31, with homology - 29 Number of transcription units - 12, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 411 495 ## COG2801 Transposase and inactivated derivatives + Term 526 - 562 8.6 2 2 Op 1 . + CDS 889 - 1269 511 ## BDP_0077 hypothetical protein 3 2 Op 2 . + CDS 1272 - 2900 1446 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 4 2 Op 3 . + CDS 2944 - 3996 1114 ## gi|224283363|ref|ZP_03646685.1| hypothetical protein BbifN4_05994 5 2 Op 4 . + CDS 4009 - 5934 1269 ## BAD_1255 sulfate adenylyltransferase, subunit 2 6 2 Op 5 . + CDS 5949 - 13550 6348 ## COG4646 DNA methylase + Term 13564 - 13606 13.0 - Term 13455 - 13504 1.1 7 3 Tu 1 . - CDS 13532 - 13684 103 ## 8 4 Op 1 . + CDS 13626 - 13934 212 ## gi|225352332|ref|ZP_03743355.1| hypothetical protein BIFPSEUDO_03948 9 4 Op 2 . + CDS 13931 - 14242 259 ## gi|225352333|ref|ZP_03743356.1| hypothetical protein BIFPSEUDO_03949 10 4 Op 3 . + CDS 14255 - 16087 2460 ## COG3505 Type IV secretory pathway, VirD4 components + Term 16217 - 16254 3.1 - Term 15949 - 16000 0.1 11 5 Op 1 . - CDS 16094 - 17461 951 ## BLD_1813 hypothetical protein 12 5 Op 2 . - CDS 17517 - 18056 150 ## gi|225352336|ref|ZP_03743359.1| hypothetical protein BIFPSEUDO_03952 13 5 Op 3 . - CDS 18071 - 19774 1502 ## COG3942 Surface antigen 14 5 Op 4 . - CDS 19779 - 22172 3177 ## COG3451 Type IV secretory pathway, VirB4 components 15 5 Op 5 . - CDS 22176 - 22526 399 ## BLD_1817 hypothetical protein 16 5 Op 6 . - CDS 22561 - 23406 1117 ## BLD_1818 hypothetical protein 17 5 Op 7 . - CDS 23421 - 23654 437 ## Blon_1669 hypothetical protein - Term 23945 - 24003 19.0 18 6 Tu 1 . - CDS 24214 - 28467 6383 ## Blon_0524 LPXTG-motif cell wall anchor domain protein - Term 28581 - 28624 12.1 19 7 Op 1 . - CDS 28650 - 29585 908 ## BLD_0377 hypothetical protein 20 7 Op 2 . - CDS 29582 - 29941 169 ## 21 7 Op 3 . - CDS 29938 - 30219 134 ## gi|291457753|ref|ZP_06597143.1| conserved hypothetical protein 22 7 Op 4 . - CDS 30225 - 30890 916 ## Blon_0530 hypothetical protein 23 8 Op 1 . - CDS 31003 - 31500 437 ## BLD_0380 hypothetical protein 24 8 Op 2 . - CDS 31497 - 32759 1140 ## BAD_1253 hypothetical protein 25 8 Op 3 . - CDS 32756 - 32911 116 ## gi|291457747|ref|ZP_06597137.1| hypothetical membrane protein 26 8 Op 4 . - CDS 32908 - 33099 250 ## gi|291457746|ref|ZP_06597136.1| conserved hypothetical protein + Prom 33185 - 33244 2.1 27 9 Tu 1 . + CDS 33267 - 33920 373 ## gi|224283346|ref|ZP_03646668.1| hypothetical protein BbifN4_05905 + Term 33964 - 33998 0.3 28 10 Op 1 . - CDS 33995 - 34363 328 ## gi|224283344|ref|ZP_03646666.1| hypothetical protein BbifN4_05895 29 10 Op 2 . - CDS 34363 - 34584 207 ## gi|291457743|ref|ZP_06597133.1| toxin-antitoxin system, antitoxin component, Xre family - Prom 34618 - 34677 4.4 + Prom 34620 - 34679 1.6 30 11 Tu 1 . + CDS 34707 - 35780 958 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 35817 - 35882 19.7 + Prom 35808 - 35867 2.1 31 12 Tu 1 . + CDS 36045 - 36392 199 ## BLD_0318 transposase Predicted protein(s) >gi|316915607|gb|ADCN01000032.1| GENE 1 4 - 411 495 135 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 133 86 215 216 117 45.0 6e-27 MGSKEIVAWDVSRHPDLAQQQRLLAMLEEKLPEGADPILHSDMGWQYQHDWWRNRLGELG IRQSMSRKGNCIDNAATEQVFGHLKDEFYTGREFASYEEFKSELDAYIIHWNTRRRQIRL EGHTPEEFRNMSLTA >gi|316915607|gb|ADCN01000032.1| GENE 2 889 - 1269 511 126 aa, chain + ## HITS:1 COG:no KEGG:BDP_0077 NR:ns ## KEGG: BDP_0077 # Name: not_defined # Def: hypothetical protein # Organism: B.dentium # Pathway: not_defined # 17 102 2 87 114 65 40.0 6e-10 MSWANKRRRTVQKLVTFTPDEWERVNSLHKKVNKYTTRYRSFTVFARKMLTDGEIRVTEI RPLTDPEPLAREIGRIGVNVNQIAHWANANEHITAEQVAELRASFDRIERLLGDLFANKR TAGKDV >gi|316915607|gb|ADCN01000032.1| GENE 3 1272 - 2900 1446 542 aa, chain + ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 21 295 19 315 402 72 24.0 2e-12 MAVVKLGKPVKSNLGGPNGAMAYIIDPAKTDGGRLVSSNYERTGTDYDALADPMLEDNEN SPKGIQKNSRLAYHIKLSFSPDDPVTPERVHELGVEFAHRITSDEYKFVVATHTDRHHLH DHIMVCAASRYGKHLKAELPKDIIEQWRVIANEISEREGLSVIFNPATERVARKMRGDET TPNEDPTTQARDPKHVEETSEPGTAATARTTRRAENEEPMERRYGMSMEEIYASAKGLGV KDQLRMLIDLTLAGAENFEDWRNMLDVQGVDVTVRGQHFTFTMKDTGFKVRDTKLGSAYD MTNIMAGLQSTPVIPITFNRRLVAKQTRKTVTVWLPGTHRKKKITFDAKRLVDDGGSTLR AFLPLHRDQIILDPSNRYAGKTTTHGLYQWFGEPTSRLEPLASPERLPLRYGVSPTQQRY YQAQARRLDRLAGEAKALNAAIRWTRLAGGDSAKGLKLLRGKVRESHDELQAAVIALHDA IQQGDLDLVAETRGEMERREALCDRYEGELAAIEREIHTTRDREQTETEQREQHQHKRGR SI >gi|316915607|gb|ADCN01000032.1| GENE 4 2944 - 3996 1114 350 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224283363|ref|ZP_03646685.1| ## NR: gi|224283363|ref|ZP_03646685.1| hypothetical protein BbifN4_05994 [Bifidobacterium bifidum NCIMB 41171] # 1 350 1 350 350 553 95.0 1e-156 MPIEEQAEEKIQNAVQTIITGGAKLMLRIPKGVAMALLRSGMKLTKTGVHAAGEAVKNKI DSGEMSEKRLQRKKDGDLHELQLDDSTMREVQHSLKTAGIDYHLERTDQGQFILHFAGKD EDHVRHAVQRAFKGMGLDVTDDDFTVEQTEQTRNEPEPPARETPAEPAMKPMPTQRIAWD FVDPEVMEMAANSLAARHPELSWDKLMGDTTCDEQAGRDFADRIIGKAAADPSLRDELDT ILRDDYGQGAQTQEQTRRQTIEPNREKPAPEPESEPEPAPDEARTPATRQQTQARADNPR PAGKERKPKPIRSKKALLERFKTRLNENLAEQKNHMPPTQNRDRTPRKGR >gi|316915607|gb|ADCN01000032.1| GENE 5 4009 - 5934 1269 641 aa, chain + ## HITS:1 COG:no KEGG:BAD_1255 NR:ns ## KEGG: BAD_1255 # Name: cysD-2 # Def: sulfate adenylyltransferase, subunit 2 # Organism: B.adolescentis # Pathway: not_defined # 342 446 128 234 435 65 35.0 7e-09 MNQQEQATQHAAIFQDTINGTNDPTPWPVTMWASSGDTIWTAGTARTAGEDSVGMIYDPG DTIVHRNTIAGDVTRATESFAIRPADGQSPMDAMLAGIEQWNHRHPDRWDTVATPGQYRM TDPTTGRQLPMGWSASLAAAASAAGRLDPDLLQASLMQNAVEHEPRPCVFFLEDNGYDLM VFSWHRNQQGLFDAMSFKHLQYDDLSMQVTTISHSEDMSESFPAKTMSDGELLTQSRVYR DEYQHWREQDGGPVAQGMTGRVMRSGLLKPGLEQKPLLNLNDGRRAPDWDEFTDQAAISI LQGQPISPTPALPQQEQPERDTDPTAVTQTPARTAAATKQVWPNAWVANRLAHTYILHAK DGRDWPKMIVGLPRGTAIDGKDLTGWATDMFMSAKNQRQKNEGRAVNIRFRPGTPVELFT GRGTERRTMQVDPQTLVQAVIDAQKRNRDAEKTLDTASVELASKTVEESWPQIERMQGRF TEYQRAGTYKPSVAMKWARRLVDRTAGEDEGRWTNRQRRQAARLLIQELTGTQDPTQARS KTTDRPTVEQYVPEGGKTPDAIGDETPAPPRKTETDMATKQRQDPIVPASQSPAAGPERR HTDLKSTLDRFRTRLKKNLDGLNADPPTAGTDRNRGQRKTL >gi|316915607|gb|ADCN01000032.1| GENE 6 5949 - 13550 6348 2533 aa, chain + ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1141 2137 296 1277 1315 388 31.0 1e-107 MVRKRLYAKQTASVEYEQIDLFSLLEEEQRQVDRTAEQVRGYEITVGHAAVQRLRARGAD DETIAAVAAEYRENRLRGLGRRDARIAAENKLGVGAATPGETTPQPVVKRFTQSSGTENN TEERNNDGRDDMDRPAAQGALREEPQGDGTAPGGASGTVQQVGAAVQGVHPQQPARDPEH AHQLADGQPSAAVQGDDDGQRARGASAGHREADEGTPGADHGPADGVQAPAQPDGLPEGG TPDDRPGPAQRDERGASGVDEHGDPRDRGKLLASLDSQRARSPRERAEANIAAIRTLKTL DGNGDEPLSAEQTDTLRGYSGWGGCADAFSDKPEWADLNAEIRELLDDDEYTQARASTLT AYYTPGPVVKAMWDALDIGSAPIQVLEPGCGTGNFMAGIPENIKANVSGVELDPISARIA AALNPDATILNADLADCTIHPGFDLTIGNVPYSGDISLDYRTTDGGTSRLPLHDYFIERS VDALRPGGVAMLLTSRYTLDKRSETMRADLARKAELVGAVRLPSSTFARQAGTEAVTDVL VLRRRERTLDRTPDEAWIHSNPVAVPGYQDVTVNVNQAVANDMTAHAVGDIRPVIGRFGG DFDVVFQGDAEQVGERLQELLSTQITHGPALSLGEAEPAGRAEITVRPDHVAPFEYSVDQ RGVVWYGDGTTVTEIAHGQGDEARRLRGMIRLRDLARELQRLELDPARVDDPDVEAKRAE LDRAYDRFTSEFGRLCDRANQRAYSGEESGCHLVMALEETDEKGRFAGKAKCLSQRTISP VPPMPDHADSLDDALDISLDRAGGVDLELIARLADTTVEEAETGLGDRIIRDPDTGEVMP AEDYLAGDVGTKLDHVTAMAEHLRRRAAREAMTEFAASTYATSEDMPAIEQAREWIDTAG TDVWRSLTDPYAAESYRDPTPVIERINDGRHGWTMGWNRNPELVLALVWRAVEELPERHS RVTLERSDTGERKPWHAPAWHRSHGTSPLWDALCWTWRDGDAPQHYAPILADRRMPVRDL ALFVHKIAHTDRLETADKTAILSNLFESYSAHDKHGSTIWTDTTIGAMVRRLMPGTDDPT RLAERLATDMSVSEWIWGIARDLPDLRQGAAHDAYGAPPRAIDARPDDYQAFRARREEQL GQWREQPEHAEAARADQTDAERLEHVADLLERVQPTPLETEQIKAPLGAPWIPARDVHDF MMETFNVRGHGLTPGKLSQYSVDWIPQLGQWRVGYSGGGDIDYKAARTYGTEDRNPFQLL EACLDNAQITVTKDSPTETTASGKPKRVKDQKATMAAIEKANAIRDAWNQWVFKDPDRAQ RLTALYNRRFNGMRPRHVDGSYLTTPGITHGVALRPHQKDAVARALRSDEGTLIAHVVGA GKTFEGVTLSHEAKRLGKASKPMLVVPNHLVDQWAGDVLRLYPASRILVMDKDAQRNPES VRRFWGRVANGDWDAVIVPESRFSQLHVSKERRLRNMRARVDEFAQAVEAAAKARGDKDP TVKRLEAARKSAETAMQRLRDGKESRDDKALAGIKFESLGVDMLIVDEAHHFKNLGVPVA SADLGMQLSSAAKCEDLLDKCEWLREAGHGGNIAFMTGTPVSNSMSELYNMQRYLAPGTL KAQGLDTFAAWAGAYGQVVPTVELKPEGNGFQVKQRFARFQNLPELMNAVKQFTDMITND DIQLPLPELEQVPVPVPITDRQKKEMEELSDRADLVRDGDVPPEVDNLLRITGDGRKIAL DPKLLKGHENDRPLENGKIQACAENVARIWQEETPRLGTQLIFCDSSTPASGGWNAYQDL KDRLIQLGVPAEQIAFVHDAGDNPARREQLFAKVRSGEIRVLMGSTQKLGTGTNVQERLA AIHDLDCPWRPADLEQRLGRIQRQGNTYDHVRDYRYVTEGTFDAYSYQTVERKQRFISQL MSSKSPAREAADLDADVVTLANIKALATGDPDIQRRMTLENEINQLKLLRASWAQQKADT RRDINQQLQPRIEGIRQAIREKTDDKPLASKALNIHQTARMNGKWEGMTINGRPVGDRQT ACRLLHQAAHQAHDGDTIAEYDGLPVIARRAATTGRITLAVKAVHEHESGTEMPGPYLTG PSSIVSQLDRIVKNMATDPGKLTERLADAERELAAAQETLAEPFAHEDEYRQKQAELERL TSKPDEPRETESRDQETKERSAGMPLTTENARRLLEQDHDVTEVTQGGNAMGHYLEARLT DGRAVQIDFHDNPAWKDTDRLAGRIEVSYANRPQAEWQYDDNDMADREHTVIDPADPAAG KTLAKAVEGWERAGGLHTARAAGTSHLAANQPPEEYAYRWRKPGDPDRHIAYLSTAFDRD QAMKARENAGYVVTKVDEDPAVLYEQHRKASCMRASHILERYESPDQDAVRILHGIVGEV NAHDPENDIATYLAYPSDKVVQIAGDGLTSADIAEKREMGGWDPRKDPLMRINAQGDWTG ITQQQADQIVWDNRDEILTRASYDSELSTWTLHQLDQLKEPQPTQSLDRDRPEPDHKAPA QADSTTKRHGPRL >gi|316915607|gb|ADCN01000032.1| GENE 7 13532 - 13684 103 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVPSNQMMGSGWSFVSVVMRVFCSFVWNECGVARKARHPVAREDYSLGP >gi|316915607|gb|ADCN01000032.1| GENE 8 13626 - 13934 212 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|225352332|ref|ZP_03743355.1| ## NR: gi|225352332|ref|ZP_03743355.1| hypothetical protein BIFPSEUDO_03948 [Bifidobacterium pseudocatenulatum DSM 20438] # 1 102 1 101 101 136 75.0 3e-31 MTTETNDQPEPIIWFEGTLISSPRQNRSAEDWLLETMAMGTATRKITIHASGREHSENIR DHARKGSRLMVKGTAGDEGSGIDIEATSLAFDPSHDEPDGNR >gi|316915607|gb|ADCN01000032.1| GENE 9 13931 - 14242 259 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|225352333|ref|ZP_03743356.1| ## NR: gi|225352333|ref|ZP_03743356.1| hypothetical protein BIFPSEUDO_03949 [Bifidobacterium pseudocatenulatum DSM 20438] # 1 103 1 106 106 126 73.0 4e-28 MTRTTTVSGIRPDKAGDGEWIDINGHVGRLMSTLMADGRPFSIDVTPGGMTTVTPLPPPK DAEAAGGDAQAETEPADGRITSRKTLYDRFRARLKENLAERKQ >gi|316915607|gb|ADCN01000032.1| GENE 10 14255 - 16087 2460 610 aa, chain + ## HITS:1 COG:CAC1969 KEGG:ns NR:ns ## COG: CAC1969 COG3505 # Protein_GI_number: 15895240 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Clostridium acetobutylicum # 133 586 157 550 591 193 31.0 8e-49 MEQARGIIVKTLTILAGFWIADLAAARVQAGLAAGESIERIMDGMTTMLQHPLALGFDRT SLLCGLGGACAVGLFHLYRWSMKRNWRDGEEYGSARWSTSREMAPYTDNDTRQNLQMTAT EGLSLDAPATRRNLNTAVIGGSGSGKTATHVIPNILKGSMNYACTDPKGELYAKTGGDLE KMGYTVKQLDLVDLTSETKFNPMRYIDPTKPDVAIMRLVTNIMDNTNGSTPKEHQTDDFW TKSERSLLTALTAFVYYLPDDILKDCLHIDAGQTLNAVADMRDLLEASEQDETKESQVDA VARTATEIYEETRAEWEREDADHDDPDLREAWRLAQGLKFAARQYRPFTQGAGETKKGII ISLGVRLAPLTVGPVREILSDDDLGIDRIGGYADEHKGGYRHPNGKTAIFLALPDEDPTF NFLAAIFYQCLFDSIIRRCRTYPGECLATPLHCFLDEFANVGRIPNFDKLIATIRSRKVS VSIILQTIAQLKTMYKDSWETIVGNCDSVLFLGGNEQSTTEWLSKLLGKETIDICTTSDS KGVSGSHTTNYQRTGRELLTPDELAQLDNDKCIYNLRGLHPFLSRKAWPGTTIARPKSTL RHSKEWKAAA >gi|316915607|gb|ADCN01000032.1| GENE 11 16094 - 17461 951 455 aa, chain - ## HITS:1 COG:no KEGG:BLD_1813 NR:ns ## KEGG: BLD_1813 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 13 423 4 393 422 84 24.0 1e-14 MTRIDRKTGEPILSPKLTVDQLYAMANEPGWRPWMRLIAEHPHAWPELAEWWHTAQEQGF DTAGAAPLPPASMRGRRRVAIPSAPLPPEDEPGQEPVSAPAEQSPPDDSAEKALKDADDD FAALERIADLESDTADIPPIPEAESSGSAVTYSADPDDLKVRRVFPVGKALVAIVMTASL IAVSWMGLQIKNRRAAAMRQEAHETAISACDSAEATRKTIQSDLDRTTAKASRLLKDTSR GQVADPKTLDALNRLLDAKTSTIKGSCAPDAVTSDVDRTTAALRRTTKELKNRLTDLKTA AKAVTDSKLDKTVDDANALYKQTDGKVADDKTRETLLKAVKTRDVDAIAKAVKEVNESKT AKEKADAEAKAKAEQEAAAAAAAQQQAQASQSQSAPQRQTPSYSQGSSGSGSGSGRRPSS GGSSSSTNTGGASPGWSVPTPSDGGTGLPGSDPGL >gi|316915607|gb|ADCN01000032.1| GENE 12 17517 - 18056 150 179 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|225352336|ref|ZP_03743359.1| ## NR: gi|225352336|ref|ZP_03743359.1| hypothetical protein BIFPSEUDO_03952 [Bifidobacterium pseudocatenulatum DSM 20438] # 1 179 1 179 179 316 97.0 3e-85 MEPKRNRIIAATGFAVALLILGGNVAVICAGNGTAEDTQITVARPRTKTEPGQKTAGDEE TEPATPTEDDPCADLAPKALGVYMGGERGQLEGEYFTPDAAGLDIPASSIAPQPLPETEF TGFPVSTGRRVATCAVSTGLEASWVLDYTLTDDGWRCAAVKGPLEGGYRVHEGKPEEQK >gi|316915607|gb|ADCN01000032.1| GENE 13 18071 - 19774 1502 567 aa, chain - ## HITS:1 COG:SPy1801 KEGG:ns NR:ns ## COG: SPy1801 COG3942 # Protein_GI_number: 15675636 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Streptococcus pyogenes M1 GAS # 453 555 390 490 503 90 46.0 6e-18 MSGTQAHHAGGTRARIGRAATGVVSSAAQFGSDRADIADSMGHTAAEMAGRAGMYGMSST MHGVGWTAGKARRIMNRGKRALRSGKGMRKTAGKPKALSEAKPSEKIGKFAAKGKASKRI GKRIGAGLGNAGRSVKRMGSTGMGWMDEAGARLTVADDDFASKLGSATRDLTFKAARAGV KGVNSSAKFIWRHRRAPVKAARDVQATGQAAVRAARVAANFVRMAASRVIAGAASISLPI LPVIAAMLAVLGVLLAVMGAFLGSNASESTVSGVPAEYEADVIRAGSICQVVTPSIIAAQ IDQESNWNPKAGSSAGAQGIAQFMPSTWASAGKDGDGDGKADIWNPHDAIWSQGNYMCNL ASQVETAKKSGKLTGDTLELTLAAYNAGLGSVLRYGMVPPFEETINYVRRIKELAATKYT ATGTAEGGTVGSLEPKLTVSGGIVSTAGITPDTRYPWGQCTWWAATRRADIGKPIPGWGN AATWAGSAASAGYTVDGSPSAGSVIVFQPGVLGASADYGHVAMVEEVRGDGSILISESNA LGLGVVSTREISASQLAAAGNGVRYIH >gi|316915607|gb|ADCN01000032.1| GENE 14 19779 - 22172 3177 797 aa, chain - ## HITS:1 COG:CAC2047 KEGG:ns NR:ns ## COG: CAC2047 COG3451 # Protein_GI_number: 15895317 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Clostridium acetobutylicum # 333 766 123 593 617 105 23.0 4e-22 MFGKKKPQVAPDEDDAEARAKARRKKATRLPKGVKQLIGYDAMLRNGIASLGDGRWSATI LFQDINYQLSPESHQMEIIDRWAKLINSFEAGQNVQIASYTRSRGVREILADVMMGETGD SLDHYRLDYNRLAQGKLESVSRNTSTVKTLTVTVRESDEQAAVATLNALCNNLVSQMRSI DACKATRLDREHRLRLMAEVLRPGEEFRFDERRFEHQPGKPDTKDLVCPWSIDARNPIQL DIESLDSKYLHRTMWVSSLPPELSDQLVNDLTGLRARVDVSIHLAPMDRGESMTLVRRKN AEVKMQIMDQRRKNRKQGLDPDDLPDDLADQQEQLGQLRDELRSTNQRLVDSIIVIGVSA ASQEELEVACRNVKAKVNAQSCTAESLKFMQMEGLTAELPLGNNPLPMKRTLTTNSAAIL IPFTTQEVFEPHGLFYGSNARSGNPILADRRSHMNSNGFVLGTSGGGKSFTVKQEIAGMF LNRDDEVIVIDPEREYLALAAAFGGQIIQISAGTGTRVNPMDIVLEDDSASDPVKDKTNN VVSMIGALIGGIDGLDPLQKGLVDQCVSNLYTRYRNQGGGVVQPTLQDLHDELQAGGDQV SRYLADALNPYITGSMSGFNGQTNVDLSNRFTVFDVSGLSGELRTFGMMVVIDQVWNRVI RNKANGRRTWLYVDEFHRFFSNQYAAAQFKDIYKRARKYGLGVTGITQNVEEILDLQDAR EMLSNSDFLMLLSQNSTDADALCELLTLSEEQRQYFTGVLPGQGLMKIGSAYVPFDGRIP AGGDLYRLYSTTFQEGK >gi|316915607|gb|ADCN01000032.1| GENE 15 22176 - 22526 399 116 aa, chain - ## HITS:1 COG:no KEGG:BLD_1817 NR:ns ## KEGG: BLD_1817 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 3 116 2 112 126 89 48.0 5e-17 MALQMPVYRELTTIESKVFMGMSWRQCLAAVILAIVCGGGYVGLWLGLGMDPNLAMYLIF PPGLPVAIWGWVRPKGLMPEKYLKYILRHYTQREVYLLDGPGRPYRTGAKPTIKER >gi|316915607|gb|ADCN01000032.1| GENE 16 22561 - 23406 1117 281 aa, chain - ## HITS:1 COG:no KEGG:BLD_1818 NR:ns ## KEGG: BLD_1818 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 281 1 281 281 191 39.0 3e-47 MVDFIVGILNSIGSGVGDDLVADLLKTPAEYNAGMYQLSLTVARSAVKPIASTILAIMCV LELARVSTRADGDRELGVKLVAMAMFKLTLVFTAAQHSELMLQAIDEIGDSVLGGIHSAA PTTGASSGLGLGDSMRDAIDSAGWMGQIPCLILLLIPFLVSKGATIVVTVVILLRFVQIY MLTAFNPLPIAFIAQEETRQWGINYFKQYASLVFQCATLYLAILMYRTLVGGTLNPSKFK DGDSLSGWVMDNFTGLLLASVMLIGIVMAANSVAKKLFGGE >gi|316915607|gb|ADCN01000032.1| GENE 17 23421 - 23654 437 77 aa, chain - ## HITS:1 COG:no KEGG:Blon_1669 NR:ns ## KEGG: Blon_1669 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 13 77 23 87 88 71 63.0 7e-12 MYGITIAADSGSVVTSALQLFSQFAIIGGGLWAVWGVITLAGGLKDQNGPATQSGVWQVV GGGLIIAAAALFSNIAL >gi|316915607|gb|ADCN01000032.1| GENE 18 24214 - 28467 6383 1417 aa, chain - ## HITS:1 COG:no KEGG:Blon_0524 NR:ns ## KEGG: Blon_0524 # Name: not_defined # Def: LPXTG-motif cell wall anchor domain protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 51 1408 105 1445 1480 1495 60.0 0 MGYINNKRKTLALLTAVATLAGGLTAGTAYAGGGGGNRPGTGGSGAATQFWQYKDDASGS WGPATDINSVSRAMANAGVRMDDSSGKAAAALADANSRCVAGFHQRHPGEGDGDCRVVAV GAVSGNGSTTSVWNGSGIADVSIWLDNWNKYIAPGDYNYAGTRHYKTSTAFDDDPSTSVD KLMERYVSSTASIVIIALDKYQPAPPNYDLTVTTTHKQRTNLKVGSTDPIGDTLHASNNG SSIKENLNGTAVIHYEGQKNGYVAAKTVSKPITFANSGDTQLENLATPADFGMSHWQEGQ YWIDIQVAKQGRMNAAVDTTDKDPSETWTVSAEPPTPPTKTIDEGVSADSMTNRTVITYG TGKGGYEMTFKDKITANGVDYTVDDYKLVDKTDNDRDASNEFTITWDRKTDTVSAVRTAD KGEMPLDHQYEFSFNVTVSKPKDFRKVKDHATGKWNQEPEADAGSKEFDTWQPNPDKSWI FEQDGEWQAVIDPQETNKTGGDSHTYLDGDKVGSVVNGTVGRNLIQAPKQFTLTDDWTAA DYIFDADTKNIRVYEATAGTDRESSVSDIVNTGKDVTDQFDITVQGTKATATAKASYLKG LKKLKNPKQVTLLIPGRINFADGKGAAQVRKDFGKQAGDELTFCTAPNGKNLTNGGSETV NNHTEPTNEPQICGYIPPVKKDVVSEASQGGDQESVDGKVVQPGQKVEYQLNTQPQLPAD LAYEVKSVSFTDSYDAYLKPDKQTLEMMDLNTGKPVSKKKYTTTWDDSKHMFTLTVTDQE TISQWRAGTSPRLQVRFEGTVADDAPTDHKVGNKWVLTLNNSLTPSNEVFNIPPKLDPVK KDTQKDPTISIDGKTALLGDEIYYRVTLDARQDNQAYKVWRLGMTDDYDDEYLKLDATNV EITDETGKDVTDKFNIQDKDGALYAYAKLVDTEIPATGETVKGDPQPEDLKTYSESDEHD PLTQPAIDQTLLGHTYTVTMPMTVIKVTDGYTVKNKATQVLNKIRKDTNEVTNPLKPINP AKDVTVKVGGASANGKSIYKGRSFLYQLDSSILPANRAYPQVDKWDIVDSLDPAFDEYTG QWAVYATRDLLSGGEALASKGDRIAGSGFDSSKLGGDLFTLSAATVDGRNVVTIEATDRY RALVSDDSHEAGWRAYIQCKRLAVTDRHENQFTEHYNDKTLESNVVWTRTPDMTPSIDVQ KWDRKSGWPNGDRDNSKDALTVSGDTEIVFTITNTSKTDPDTKQGAVFRTKDIKLEDSTI VGDGEVVDLKYPADWDTKVLKPGESVEVTGTLKGVTKTHTDRAKVTGTPLTECPVDTSAP FGDGTSDDESGSKPEAETESKSDDVVTIDGKDYCSDTKVESATDDWNGYRRTLAQTGAGI ALIALAAVVVLGGGAALMAVSRRRKAKAPADTEGSEE >gi|316915607|gb|ADCN01000032.1| GENE 19 28650 - 29585 908 311 aa, chain - ## HITS:1 COG:no KEGG:BLD_0377 NR:ns ## KEGG: BLD_0377 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 16 221 19 224 317 129 46.0 1e-28 MTEKEKAIEDETIEVSAESTEKKTKKPHRRRAIVITVVVLALLTAGGIAWKAHADRLMAE ARADCAAASERLRTATNDWNTLLNGSAADAAKTDRKSVKDAKMLDALSKTMKATIPKTVS CKADSRTGVQEAAKAITANAAWYKTHAKTLSKAVKAVESSKLDKTVDDAQALYDATSGKV QDDKTRASLLDAIKKRDADAIGKAVKTVNESKVAKEKADAEAKAKAEQEAAAQAAAAAAQ SQRQAQSYTPSYTNTGTSSGRSYTNVGSAGASSGSTGGSSSGGSGWSGPTSGGHGDPGAC SLEDCSIPIQH >gi|316915607|gb|ADCN01000032.1| GENE 20 29582 - 29941 169 119 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRIMLLGLLVCISRVALCGVMGVMAETVARRAGSSSLRGLCRLCVVAYALVLVASFAPM DSAQTVVHRAVPLLFLVPNLFIWISMRPSGASMRGTRRRNDADGSADSISCEPMNKENK >gi|316915607|gb|ADCN01000032.1| GENE 21 29938 - 30219 134 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457753|ref|ZP_06597143.1| ## NR: gi|291457753|ref|ZP_06597143.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] # 1 89 1 89 90 144 92.0 2e-33 MNLTPRPRDLTALLTGGRPAPADTGRPESAETEIPKNRKTVKPNDAEGWVKTSVSLRAST RRRLKTFAAEHDMRIQEVIDAALETYLGFGGER >gi|316915607|gb|ADCN01000032.1| GENE 22 30225 - 30890 916 221 aa, chain - ## HITS:1 COG:no KEGG:Blon_0530 NR:ns ## KEGG: Blon_0530 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 10 211 1 192 198 117 41.0 3e-25 MNDKKNREPMVIALATGKGGSMKTTSAVFLACALVDQSRGEQHVLVVDADVQGDAKDWWY RAAELDDPLPFDVMSAAPADIAHLHGINGRLDDPVDWVLIDSAPYGRALDESVNNADLVV IPSSPSRIDLDQAVGVKDLCDRRGVPAAILLCRTEANTTALRDALAWVDAADIACFETLI PKRQDILNAKSTRPRGSRLHEYRDLSGELKQTMRQLKGEDL >gi|316915607|gb|ADCN01000032.1| GENE 23 31003 - 31500 437 165 aa, chain - ## HITS:1 COG:no KEGG:BLD_0380 NR:ns ## KEGG: BLD_0380 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 10 165 62 215 215 119 48.0 3e-26 MNDRDTMPACARIAEVSPDLADRMWNTVTDPDGRDLIDERMRAKDCVLCAACPMRLDCIS RALVNGWKDKAVYGGLDYASRWILARLIARDLHIADGGLHRIPRSRVRDWLADHPDWAER MRRDGRDYWRRAKRRQRSRREYTHDDPLFLPTEPVPKGLVQGSLF >gi|316915607|gb|ADCN01000032.1| GENE 24 31497 - 32759 1140 420 aa, chain - ## HITS:1 COG:no KEGG:BAD_1253 NR:ns ## KEGG: BAD_1253 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 21 414 98 459 462 240 41.0 9e-62 MSNIALSWAFKCHVGNASAKAVLVYLADRADDDGTAAYPKIATIVNVTELSERTVRTALK TLQERGFIRRGDQRYARLGKGGRNRLPQYCQIVWDLAVESDPSTLEWIKETHTAEHDPKT MGKTVDPEAGTVFENGESKGVTPENAGTKPIPSTANLAGLEKGPEPALQMPQGQHCESCT PSTANAAPPALQISQSCIYKDKTLQVNPPSKPSFPSAPTGHLPAGGATPARDEKNDDGTT IVLDRLAAVRSRLSLSTATPTGRDRDRVSKLVDRVTEAHDGDHAAALTLILAVIDWLPAN TYWLSRADSPRRLAADWDRIANDWTISELERRREHDAAARDRDRRTDEKPTPCPLVHQPA PHTHTFACQHVLEAMKPHWDEYDHEGSYRTGNPSEWQLACQRLADELNRRDGVEPVGERP >gi|316915607|gb|ADCN01000032.1| GENE 25 32756 - 32911 116 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457747|ref|ZP_06597137.1| ## NR: gi|291457747|ref|ZP_06597137.1| hypothetical membrane protein [Bifidobacterium breve DSM 20213] # 1 51 1 51 51 77 100.0 4e-13 MNWLAIVLIVFVAFSWLMTLALCRAARLGDEMAARLADERRAAQQREEERP >gi|316915607|gb|ADCN01000032.1| GENE 26 32908 - 33099 250 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457746|ref|ZP_06597136.1| ## NR: gi|291457746|ref|ZP_06597136.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] # 1 63 1 63 63 120 100.0 2e-26 MNDFTKAFRMSCSVFPECNRDFQAPVWTFPVVVAFARHNGPGSVDSRRLASMMAHPSMEG RLA >gi|316915607|gb|ADCN01000032.1| GENE 27 33267 - 33920 373 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224283346|ref|ZP_03646668.1| ## NR: gi|224283346|ref|ZP_03646668.1| hypothetical protein BbifN4_05905 [Bifidobacterium bifidum NCIMB 41171] # 1 217 1 217 217 423 98.0 1e-117 MGSDHRTTSLAVDGPRAAATDGEAKAIKSLLIRDIKDFDQSVPAVVRHDDGTIRPTYIGV WGQDRLIGAALIQPALCVAETLIYRTGTSGVHAAQIREAFAEHAAIIEGIAVVRKHRREG FGSQIKAFCDSWAADHGAELILSIPTNEGARLLNEKAGYTVVPPDGYLTIKVFDAQEQPL HIPYADQRTQDRGTSMWAYKLVGQRTQHFEIGVLTAS >gi|316915607|gb|ADCN01000032.1| GENE 28 33995 - 34363 328 122 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224283344|ref|ZP_03646666.1| ## NR: gi|224283344|ref|ZP_03646666.1| hypothetical protein BbifN4_05895 [Bifidobacterium bifidum NCIMB 41171] # 1 122 1 122 122 226 94.0 4e-58 MAGGIYEQSEWPDSRWDCVTVCDGCHTVVWGTFWDDYDSAARDAYFARNGWRNYCVPGDT EILELCPACAVRALRRGETRGLADTWLHPTHAYTHAFREVDAQLSARERVVANLLLTEGR TA >gi|316915607|gb|ADCN01000032.1| GENE 29 34363 - 34584 207 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291457743|ref|ZP_06597133.1| ## NR: gi|291457743|ref|ZP_06597133.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] # 1 73 16 88 88 128 94.0 1e-28 MNGVTQRISALVKSEGLTCAQLGSLLGLSKTSANGKLLGRIGWTTSDIVVLSEHFRVSTD YLLGLDADHEEVA >gi|316915607|gb|ADCN01000032.1| GENE 30 34707 - 35780 958 357 aa, chain + ## HITS:1 COG:Cgl0034 KEGG:ns NR:ns ## COG: Cgl0034 COG0652 # Protein_GI_number: 19551284 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Corynebacterium glutamicum # 176 355 14 188 190 164 54.0 2e-40 MSTSEVSPETPLDKGQRAEAAIPTNVRVYLGLSGKTQKALGEALGITKSAMSMKMCGKVG WSVSDLVTTADFLGVTPSALMDDTILSKAEAGYAKSAEYGVFAEKPGALVGAGSPRFLVS PFNPDAPVEGGISGAAKGALAGFVPFGVPSGSGSPSSPSKHDGIGVSGRSQAHETLGTMT TIIMHTSEGSITINLFDDKAPNTVANFLGLATGEKEWADPYTGQPSHGKFYNGLTFHRII KQFMIQGGCPLGTGTGGPGYEFDDEIDPSLKFDKPYLLAMANAGLRRGMDGKVHGTNGSQ FFITTVPTPWLDGHHTIFGEVADDDSKKVVDKLEALDTDPMDRPLEPAVILSVDVAE >gi|316915607|gb|ADCN01000032.1| GENE 31 36045 - 36392 199 115 aa, chain + ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 115 57 171 171 195 100.0 5e-49 MGEREGNRRYDYETKLAAVRDHVEHGLTKAEVMEKYRIAGPAPLERWCREYRSGGPDALR PKPKGRPRGAKSKPRPAPTREQLLEEENAYLKARVAYLEKVDALLAWRSATGTER Prediction of potential genes in microbial genomes Time: Fri May 13 13:14:42 2011 Seq name: gi|316915556|gb|ADCN01000033.1| Bifidobacterium sp. 12_1_47BFAA cont1.33, whole genome shotgun sequence Length of sequence - 62981 bp Number of predicted genes - 54, with homology - 52 Number of transcription units - 29, operones - 14 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 45/0.000 - CDS 1538 - 1969 716 ## PROTEIN SUPPORTED gi|23336711|ref|ZP_00121909.1| COG0080: Ribosomal protein L11 - Prom 2156 - 2215 2.9 - Term 2180 - 2216 8.0 3 2 Op 1 . - CDS 2232 - 3125 1283 ## COG0250 Transcription antiterminator 4 2 Op 2 . - CDS 3155 - 3382 385 ## BL1287 preprotein translocase subunit SecE - Prom 3557 - 3616 2.2 - TRNA 3420 - 3495 87.9 # Trp CCA 0 0 - Term 3582 - 3619 -0.7 5 3 Tu 1 . - CDS 3626 - 4846 1778 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 6 4 Op 1 7/0.000 - CDS 4922 - 6055 1243 ## COG0263 Glutamate 5-kinase 7 4 Op 2 14/0.000 - CDS 6056 - 7747 2380 ## COG0536 Predicted GTPase - Term 7756 - 7789 2.5 8 4 Op 3 32/0.000 - CDS 7816 - 8064 427 ## PROTEIN SUPPORTED gi|23465845|ref|NP_696448.1| 50S ribosomal protein L27 9 4 Op 4 4/0.000 - CDS 8087 - 8395 499 ## PROTEIN SUPPORTED gi|23465844|ref|NP_696447.1| 50S ribosomal protein L21 - Prom 8463 - 8522 3.0 10 4 Op 5 . - CDS 8547 - 11582 3890 ## COG1530 Ribonucleases G and E 11 5 Tu 1 . - CDS 11895 - 13229 1608 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 12 6 Tu 1 . + CDS 13207 - 14151 1460 ## COG0679 Predicted permeases + Term 14226 - 14258 -1.0 13 7 Op 1 . - CDS 14327 - 15775 1605 ## BLD_1612 permease component of hypothetical ABC-type transport system 14 7 Op 2 . - CDS 15772 - 16866 1065 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Term 16963 - 17012 11.1 15 8 Op 1 . - CDS 17041 - 18489 1889 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 16 8 Op 2 13/0.000 - CDS 18626 - 19738 1401 ## COG0083 Homoserine kinase - Prom 19759 - 19818 2.1 - Term 19745 - 19777 4.3 17 8 Op 3 3/0.000 - CDS 19833 - 21149 2363 ## COG0460 Homoserine dehydrogenase - Prom 21245 - 21304 2.5 18 8 Op 4 4/0.000 - CDS 21310 - 22902 2013 ## COG0019 Diaminopimelate decarboxylase 19 8 Op 5 . - CDS 22905 - 24767 2811 ## COG0018 Arginyl-tRNA synthetase 20 9 Op 1 . + CDS 24730 - 24945 99 ## 21 9 Op 2 11/0.000 + CDS 24981 - 25646 1034 ## COG1309 Transcriptional regulator 22 9 Op 3 9/0.000 + CDS 25643 - 26920 1667 ## COG0477 Permeases of the major facilitator superfamily 23 9 Op 4 . + CDS 27007 - 27939 1049 ## COG0583 Transcriptional regulator 24 9 Op 5 . + CDS 28039 - 29286 1411 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities - Term 29283 - 29323 14.3 25 10 Tu 1 . - CDS 29335 - 30660 1760 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 30698 - 30757 3.4 + Prom 30804 - 30863 3.0 26 11 Tu 1 . + CDS 30909 - 32255 1941 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Term 32271 - 32306 5.1 27 12 Op 1 . - CDS 32461 - 33588 1356 ## BLJ_1849 dihydroorotate dehydrogenase 28 12 Op 2 . - CDS 33628 - 34656 827 ## BL1264 hypothetical protein 29 13 Tu 1 . + CDS 35312 - 35464 232 ## gi|291516556|emb|CBK70172.1| hypothetical protein - Term 35488 - 35516 1.4 30 14 Op 1 30/0.000 - CDS 35631 - 36323 1210 ## COG0066 3-isopropylmalate dehydratase small subunit 31 14 Op 2 . - CDS 36406 - 37809 1771 ## COG0065 3-isopropylmalate dehydratase large subunit 32 15 Op 1 . + CDS 37855 - 38091 70 ## BLJ_1852 hypothetical protein 33 15 Op 2 . + CDS 38103 - 38903 950 ## COG1414 Transcriptional regulator + Term 38945 - 38985 4.1 - Term 38933 - 38973 4.1 34 16 Tu 1 . - CDS 39070 - 40443 1163 ## COG1409 Predicted phosphohydrolases 35 17 Op 1 3/0.000 + CDS 40948 - 43185 3221 ## COG0855 Polyphosphate kinase + Term 43232 - 43282 17.2 36 17 Op 2 . + CDS 43343 - 44542 863 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 37 17 Op 3 . + CDS 44532 - 45353 718 ## BLJ_1857 hypothetical protein + Term 45564 - 45589 -0.5 38 18 Op 1 . - CDS 45613 - 46923 593 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 46948 - 47007 4.1 39 18 Op 2 . - CDS 47012 - 47173 69 ## 40 19 Op 1 . + CDS 47227 - 47868 1082 ## COG0035 Uracil phosphoribosyltransferase 41 19 Op 2 . + CDS 47916 - 48395 669 ## COG1576 Uncharacterized conserved protein 42 20 Op 1 . - CDS 48591 - 49700 1330 ## COG0584 Glycerophosphoryl diester phosphodiesterase 43 20 Op 2 . - CDS 49726 - 50799 826 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Term 50895 - 50930 0.9 44 21 Tu 1 . - CDS 50982 - 53651 1568 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 45 22 Tu 1 . - CDS 53870 - 55423 1999 ## COG2986 Histidine ammonia-lyase - Prom 55635 - 55694 1.6 46 23 Op 1 . + CDS 55380 - 55640 60 ## gi|239620929|ref|ZP_04663960.1| predicted protein 47 23 Op 2 . + CDS 55669 - 56544 722 ## COG1414 Transcriptional regulator 48 23 Op 3 . + CDS 56541 - 56717 203 ## BLJ_1866 permease - Term 56591 - 56626 -0.7 49 24 Tu 1 . - CDS 56790 - 57611 1243 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 50 25 Tu 1 . - CDS 57714 - 58925 1041 ## BL1246 hypothetical protein - Term 59037 - 59071 -0.9 51 26 Tu 1 . - CDS 59146 - 60324 1667 ## COG0562 UDP-galactopyranose mutase - Prom 60373 - 60432 3.1 + Prom 60329 - 60388 2.5 52 27 Tu 1 . + CDS 60618 - 60893 83 ## KRH_05180 hypothetical protein + Prom 60975 - 61034 1.7 53 28 Tu 1 . + CDS 61130 - 62179 1195 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 54 29 Tu 1 . + CDS 62578 - 62980 431 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|316915556|gb|ADCN01000033.1| GENE 1 830 - 1522 1163 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336712|ref|ZP_00121910.1| COG0081: Ribosomal protein L1 [Bifidobacterium longum DJO10A] # 1 230 1 230 230 452 100 1e-126 MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVR GTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDM MGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSF DESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA >gi|316915556|gb|ADCN01000033.1| GENE 2 1538 - 1969 716 143 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336711|ref|ZP_00121909.1| COG0080: Ribosomal protein L11 [Bifidobacterium longum DJO10A] # 1 143 1 143 143 280 100 1e-74 MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEI TVYEDRSFTFVLKTPPAAALLKKAAGVEKGTENPLTHKVGSVTKAQVREIAEIKMEDLSA RDIEAGMKIIEGTARSMGITVTD >gi|316915556|gb|ADCN01000033.1| GENE 3 2232 - 3125 1283 297 aa, chain - ## HITS:1 COG:ML1906 KEGG:ns NR:ns ## COG: ML1906 COG0250 # Protein_GI_number: 15828020 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Mycobacterium leprae # 106 296 32 228 228 155 47.0 1e-37 MSDELNLENLDAVPAEEPVVEASEAAADEAAAPVEPVADLSAESDASVDNADVESDAPAA TESAPVASTQTETVSLDEDEEEVNESEQAEETDAGQQAVDEFSKSLRSLDGKWYVLHTYS GYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPD ENARRIVRETEGVTGFVGPTKDPAPLSRKEVVAMMAPMIASEALKAAGDKPAAAKKRRVE VSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD >gi|316915556|gb|ADCN01000033.1| GENE 4 3155 - 3382 385 75 aa, chain - ## HITS:1 COG:no KEGG:BL1287 NR:ns ## KEGG: BL1287 # Name: secE # Def: preprotein translocase subunit SecE # Organism: B.longum # Pathway: Protein export [PATH:blo03060]; Bacterial secretion system [PATH:blo03070] # 1 75 1 75 75 122 100.0 5e-27 MAKTSKSEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVT GMDFGLGKATLWVFG >gi|316915556|gb|ADCN01000033.1| GENE 5 3626 - 4846 1778 406 aa, chain - ## HITS:1 COG:SMc01578 KEGG:ns NR:ns ## COG: SMc01578 COG0436 # Protein_GI_number: 15966078 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Sinorhizobium meliloti # 12 404 4 395 400 329 45.0 5e-90 MGAMTMAQWQTLSDRINTVAPSATLAVDSKAKAMKAAGLDVVGFGAGEPNFPTPANVVKA AADACLDPKNYKYTPTPGLPELREAIAAKMLRDSGYEVNADQVVVTNGGKQAVYESFQIL LNDGDEVIIPAPYWTSYPEAVKLAGGVPVEVFAGADVNFEPSLEALEAARTEHTKAIIVN SPNNPTGAVWKPETVEAIGRWAVEHHIWVISDEIYEHLNYDDAHTTYIGAAVPECRGQLL VLNGVAKTYAMPGWRVGWMVAPLEVAKAAAKLQGHMTSNVANISQRAALAAVAGPLDEVH EMRKAFDARRRAIVTALNDIEGVNCPTPTGAFYVFADITALLGKPLGPKGTVSDTSADFA AALLDEAHVAAVPGEAFGAPGYLRFSYALADEDLAEGMRRFKEWAN >gi|316915556|gb|ADCN01000033.1| GENE 6 4922 - 6055 1243 377 aa, chain - ## HITS:1 COG:MT2515 KEGG:ns NR:ns ## COG: MT2515 COG0263 # Protein_GI_number: 15841961 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Mycobacterium tuberculosis CDC1551 # 10 377 6 368 376 258 47.0 1e-68 MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALAAALAQVRLMGGRVVLV SSGAIAAGFGPLGFDSRPVDVATQQATAAVGQGLLMARYETAFGRFGIRVGQILITAEDT IRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLL TDVDALYTAPPSQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSG IPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAADPRGTIVVDAGAGQAIRG GRASLLAAGALEVHGDFSAGDPVWIDAESGEHLARGLAGFDSEEIPQMLGRNTAQLKRFL GPQYAHPLVHRDNLVLV >gi|316915556|gb|ADCN01000033.1| GENE 7 6056 - 7747 2380 563 aa, chain - ## HITS:1 COG:Rv2440c KEGG:ns NR:ns ## COG: Rv2440c COG0536 # Protein_GI_number: 15609577 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Mycobacterium tuberculosis H37Rv # 1 509 1 468 479 422 53.0 1e-117 MSDFVDRVTVHVKGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDY RFMPHRVAGSGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKAKHPGAQLADLRHE GDRCVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAG KSSLIAAMSSAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFL RHIERTEIIAHVIDCATLEPDRDPMSDYHALENELALYADKLELPLGAIPIPERPRIVIL NKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALSALVHEMREEVANREQ AEEEARVVIKPLETKGRRPRRADEGGSALEFTVERRELGNGEVFFEVRGVKPERWVMQTN FDNDEAVGYLADRLAKLGVEDELRRKGAHPGDEVRIGRGARMVEFDWDPTISAGAEMLDG SNLGARGKDLRLEELDPRTHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVD DDRHDETSLFGHGESSEDGETEE >gi|316915556|gb|ADCN01000033.1| GENE 8 7816 - 8064 427 82 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23465845|ref|NP_696448.1| 50S ribosomal protein L27 [Bifidobacterium longum NCC2705] # 1 82 1 82 82 169 100 5e-41 MAHKKGASSSRNGRDSNPQYLGVKKFGGEAVVAGNIIVRQRGTNFHPGHNVGMGKDHTLF ALTDGSVKFGVRRDRKVVDVIA >gi|316915556|gb|ADCN01000033.1| GENE 9 8087 - 8395 499 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23465844|ref|NP_696447.1| 50S ribosomal protein L21 [Bifidobacterium longum NCC2705] # 1 102 1 102 102 196 100 2e-49 MYAIVKAGGHQEKVEVGDVILVNRLDAKKGDTVEFPVSLVVDGDKVTLAAADLAKVSVKA EVVNDEAKGPKISIQKYKNKTGVARRKGHRQKLTIVKITAIA >gi|316915556|gb|ADCN01000033.1| GENE 10 8547 - 11582 3890 1011 aa, chain - ## HITS:1 COG:ML1468 KEGG:ns NR:ns ## COG: ML1468 COG1530 # Protein_GI_number: 15827770 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Mycobacterium leprae # 489 953 268 748 924 478 59.0 1e-134 MQRAARSIVPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPAEPVRRRRGGRRVV RGTGAAGASLELQVQERAPLFEAPALPDAGTAADSKSADSSDSDESSDSQDSAERPTRRR SRRAASAVADSDSEDDRPRRSRRTVSADDFDDDDAPRSRRRSVVDDDDYDEDRPVRRRSR SRQSDDDDYEDRPVRSRSRRASMDMDDDDEDRPVRRRSRRAVADTHEDTPDERLFDAVES LPSGHETVRRGKPMTSLLFQEPVLPAAVDAHDTADTRDDEVDADERPSRRSRRSRSHDDD DAQPRSRRRDDRGRASADRDASRDAASGDTNADHDDFDADDTSDSRRSRRSRRLNAQERR AAAEVEQIEEDLELDDIAYSPIAEEEGDEESDATRTRSRRRRRRGSRGETGANGEHDTAE NDAEDTRSRRRDDRDDHDRDRDEDDEEQTVTRRRRRRRGGKNGEGTDDQSQNSEQPLVRR SRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREK EHHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYA GEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSG GMTGVSRKLSERERSRLKNIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERIN AKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLK DKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRF IGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLA RDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPY ALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTAEE >gi|316915556|gb|ADCN01000033.1| GENE 11 11895 - 13229 1608 444 aa, chain - ## HITS:1 COG:MT1240 KEGG:ns NR:ns ## COG: MT1240 COG0624 # Protein_GI_number: 15840646 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium tuberculosis CDC1551 # 70 443 20 352 354 276 45.0 5e-74 MALIRPGIILPFATPVWHIKMYSAAKSHVVSVLGPPPTRYAVHMTLELNRTASTAEQLNS LLTQIMENFSVSDHEGPLTDEVEAFLNEQEHLTVRRHGDTVVASTDFGKPSRVILAGHLD TVPVIDNFPPKWLEPGDSLIREEIAHAHPEDRVLWGRGATDMKASDAVMLYLAATLDGRT PETTPKVDLTYVFYDHEEVVAEKNGLRKVVEAHPDWITGDFAIIGEPTNSGIEGGCNGTI RFDVVTHGVAAHSARAWMGENAIHKAADILNRLNAYEPATVNVDGLDYREGLNATLISGG KGTNVIPDECRVHVNYRFAPDKSLAEAKALMMGADAGAELGNGEHVATGGVFEGYGIEMK DESPSARPGLNAPLAQDLVRLVKERTGRDPLAKLGWTDVARFSQLGIPAVNLGAGDPLLA HKHDEQVPESDLTAMAAILTDWLV >gi|316915556|gb|ADCN01000033.1| GENE 12 13207 - 14151 1460 314 aa, chain + ## HITS:1 COG:Cgl2335 KEGG:ns NR:ns ## COG: Cgl2335 COG0679 # Protein_GI_number: 19553585 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Corynebacterium glutamicum # 4 313 1 308 310 169 36.0 6e-42 MPGLISAMQGFCVIGIVIAVGYVAARMRIGGPSAQMVLNRFSFFVSSPCLMFAILSKEPI FDIFHPSIIVAFFSAVLVGVVFLVLNRMFFHLNAPDATIGALNSLYLNSNNIGLPIATYI LGNPALVAPILVMQQAIFTPVGLTVLDVTTKGKVSIKEIAKQPLHQPLLIGSLLGIVVSA ISAKSGWFPVPKFIFDPIDMIGDSAVPMILMAFGMSLHGTKPLQQKGDRPAIFTVAVLKN IIMPIIAFLLAYFVMGFRGSELYACVVLAALPTGQNVYNYAARYNVGLTFARDGILMSTM TSPVFIAIIAALLS >gi|316915556|gb|ADCN01000033.1| GENE 13 14327 - 15775 1605 482 aa, chain - ## HITS:1 COG:no KEGG:BLD_1612 NR:ns ## KEGG: BLD_1612 # Name: not_defined # Def: permease component of hypothetical ABC-type transport system # Organism: B.longum_DJO10A # Pathway: not_defined # 1 482 1 482 482 791 99.0 0 MSTFALWRLFHRPGLRGSAGHTSMLAIIAFAAATTIFLTVLGGVHGFIWRASADHTVACA FDFGACRPDTVAAWKRQISDPTSLAQFSTAYVALAVFACMLLVVPFVALAGSAARLAASR RDARLAALRLAGATTGQVVRLTALDAAGQALIGALIGIAGYCALMPAVMLIPFQEQRFTF EQLWVGPLALVITLAGVAILALISSLVTLRRVAITPLGVTSRTATALPSGTRMVLFVVVV VVAMIVFKNPAMLAQAGQAVMYGVIIGFMLLCFALVNLIGTWVITARAKAKAKRPKDAAT MIAMRRILDNPKRAWRNVSGIALAVFIAGITSICGFFGSAAVVDDANDPFTVFIRDIGTG GILTLVFAAVLAAVSSGVMQAGSVYDQAGEYRMLVLEGTDVKTLNRARFIEVLTPLNIVV IVAGGCSMLLMAPLFAASMTEPATLASFFGGLVLCYALVSIGAFASNHVAASLNLTDYRA DD >gi|316915556|gb|ADCN01000033.1| GENE 14 15772 - 16866 1065 364 aa, chain - ## HITS:1 COG:AF1469 KEGG:ns NR:ns ## COG: AF1469 COG1136 # Protein_GI_number: 11499064 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Archaeoglobus fulgidus # 113 312 22 221 226 197 49.0 3e-50 MNTAASQLQQPQPAPGPAAQPQQSQQPQQFQQPASHTQQWAPVIEAHDLVMDYTASMARA QAGHGVTGVIPAGTGAGYASANPAAAGPGAIQAGQPSQPAQPGFAMPTMHTLALNHVNFT LREGETVAVMGPSGSGKSTLLHALAGIIKPTAGTVIFRGADLSRMSDAERTKLRRNDFGF VFQSGQLLPELPAVENIALPMMLDGMPYRTATDTAILWLERMGLRALATHRPGEMSGGQM QRIAIARALAVKPAVVFADEPTGALDQATGREVMGILMAAARDNGSAVVVVTHDPNVASF CGRTVMMQDGRLHQTDANPNSAPAGGGCQPQADWGWPEGAEPPSASLRSAAPAGGSETTA GGAR >gi|316915556|gb|ADCN01000033.1| GENE 15 17041 - 18489 1889 482 aa, chain - ## HITS:1 COG:sll0905 KEGG:ns NR:ns ## COG: sll0905 COG0424 # Protein_GI_number: 16331017 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Synechocystis # 140 292 45 195 195 128 43.0 3e-29 MPIPLILASKSKPRRDVLYSAGICPTIRVSHVDEPAALEAAAREEGVTVDDLSIKQRVMI LAAAKAEAVHRAYRDVADTAAAATGDRVIAYPLKAKEIKDSEREAAVEDLREAAAGKPID YSKAEIATTRDFSGIDMPTVTEPIATAIAGQPGLTEATVGPLILGCDSMFLLGGECYGKP HSEAVARERLKRMSGATGELWTGHCLIDFATGRTVRGASHAKVHFGEFTDADVERYIATG EPLEVAGSFTLEGFGGAFIDSIEGDPHGIIGLSLPLARHLAGELGITWTDLWNVGRGELE PESKASGNQHAGILPPVENVHQPGDGWVDCACGRKHWGTNGASGILLARRDPVSGKVTHV VMQHRAAWSAEGGTWGIPGGATADGESPIEGALRESYEEANITPEDIEVVGSYREDHGPW AYTTVFAFEKPGHTVEPKANDDESMEICWVPIDDVPNRKLLTAMKTDWPRFAARLDELAT AQ >gi|316915556|gb|ADCN01000033.1| GENE 16 18626 - 19738 1401 370 aa, chain - ## HITS:1 COG:aq_1309 KEGG:ns NR:ns ## COG: aq_1309 COG0083 # Protein_GI_number: 15606516 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Aquifex aeolicus # 8 367 2 295 297 142 30.0 1e-33 MNPICNSVHVRVPATSANLGSGFDTVGLALDYHDELTFTLNDDPNDGIAHVIIHGEGADA LPCDETHLVVSTFRRACATFGLGRLGFTLEATNNIPQARGMGSSAEAIVAGIAAAAAFAQ TGDLNRPAVFDMAAQIEGHPDNVAPAVFGGLTVSWDFETAEGVGSVAVPGGEPLHGGFHA VNYPVDPSITAAVFVPDYELSTEKARQALPRELPYKDAVYNVSRVGLLPAAMNPVVLAQA AQQGKSGVAAAPAQDADTCACSGGTRESAFADELAAAQAQSNALLFTATQDKLHQPYRGA LMPPSTELIALFRSKGYAAAVSGAGPCVLVLHYGNAREAIDQIASEQLASGHWRVLHLPI NTAGVEIERR >gi|316915556|gb|ADCN01000033.1| GENE 17 19833 - 21149 2363 438 aa, chain - ## HITS:1 COG:Cgl1157 KEGG:ns NR:ns ## COG: Cgl1157 COG0460 # Protein_GI_number: 19552407 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Corynebacterium glutamicum # 7 436 17 442 445 325 46.0 1e-88 MARNNETPIRVGLLGAGTVGSQTARLIVEQKDELSARIGRPIELTGVACLDPKETEKFPW IDQSIVTTDTLSVATNSDIVIELIGGTTVARKFVLAAIESGASVVTANKALLAKYGPEIY SAAEAKGVDIYFEAAVGGAIPFLRPLRESLVGDKVTSMLGIVNGTTNYILDEMTTKGLQF DDVLKDAQAKGYAEADPTGDIEGYDAANKAAIMATLGFHTSVTIDDVSVEGITKITADDI AAATAEHKVIKLLAVVENGEAGVSARVYPALIDENHPLASVHGSFNAVFVKAEAADDLMF YGRGAGGAPTASAVVGDVVTEARHIAAGCTGPSIPLYKNLPKAPITASKAAFAVRFLIHD KPGVLAAIAAEFAKNGVSINGVNQDLKPTMTDPGYDGEIQQLRIVTHLTDEETLRNTVKA VQALDFVTGDPSILRVLD >gi|316915556|gb|ADCN01000033.1| GENE 18 21310 - 22902 2013 530 aa, chain - ## HITS:1 COG:MT1332 KEGG:ns NR:ns ## COG: MT1332 COG0019 # Protein_GI_number: 15840743 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Mycobacterium tuberculosis CDC1551 # 6 528 11 446 447 259 35.0 7e-69 MPISPIWPAATAVNADGAITFHGRTAESLLDEFGSPLYLIDTDEVVARARHFVRAAAEAF NTSTTHVSFAGKAFLSKEIVRLVAEAGMFVDTCTMGEMKIALAAGVPGRRLVLHGNNKSD EEIALAIEQGFAKIVIDEPDEPERVAAIARKLGKRARVMLRVTVGVHAGGHEYISTAHED QKFGVPLLAAGADAAVLDVLNDLKDVTPAATNARISATHSPENGAEKTEKSERELHYDVK YPYDLSHEEVSDTDKALAAAMEAIADGPSIAVLKTILANQDVLELVGAHSHIGSNIHDAD AFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGEDSMDIDVELTRLADAVNST NRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAKDSDGNPIAERVYVSVDGG MSDNIRPALYGADYTARLANRTGSAETMLARVCGMHCESGDIVVHEVQLPADLKRGDILA VPVTGAYGRTMASNYNQALIPAVVAVSESGAHVMLRRQTVDDLLNLDVSE >gi|316915556|gb|ADCN01000033.1| GENE 19 22905 - 24767 2811 620 aa, chain - ## HITS:1 COG:MT1331 KEGG:ns NR:ns ## COG: MT1331 COG0018 # Protein_GI_number: 15840742 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 620 1 550 550 527 49.0 1e-149 MSPEALSELISSIAHNLVAAGQAGALTDELIPPVDKLAVMRPKDRAHGDWASNIAMQLAK KAGMKPRDLAEPFAAALAEADGIAKVEVAGPGFINITLDSASAAAVVDTVLAAGAVTDAD KHLNKVNEYGRNDHLGGQTLNLEFVSANPTGPIHIGGTRWAAVGDAMARVLEANGAKVVR EYYFNDHGEQINRFAKSLVAAWAEANNLGEAGYQTETPCDGYKGAYINEIAARVQAEAES DGVDLTALAHQDQGLNDDGEPLGEADTEVREEFRKRAVPMMFDEIQKSMKDFRVNFDVWF HENSLYADGKVDAAIEELKSRGDIFDKDGATWFESTKHGDDKDRVIIKSNGEFAYFAADI AYYWDKRHRAENPADVAIYMLGADHHGYIGRMMAMCAAFGDEPGKNMQILIGQLVNVMKD GKPVRMSKRAGNVVTIDDLVSVVGVDAARYSLARSDYNQNFDIDLALLASHTNDNPVYYV QYAHARSKNVDRNAAAAGISYEGADLALLDTEADGEVLAALAQFPSVLATAADDRQPHKV ARYLEELAATYHKWYNVERVVPMALTDPETRGDDEARKALEIAKNPEPARAAARLKLNDA VQQVIANGLDLLGVTAPEKM >gi|316915556|gb|ADCN01000033.1| GENE 20 24730 - 24945 99 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEISSLKASGLILLRILRTATLAPWYAYMLPLLAGASTQPKDTKRKRVGDNRRNRWRLA ETAIHTVGRYL >gi|316915556|gb|ADCN01000033.1| GENE 21 24981 - 25646 1034 221 aa, chain + ## HITS:1 COG:MA0364 KEGG:ns NR:ns ## COG: MA0364 COG1309 # Protein_GI_number: 20089261 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Methanosarcina acetivorans str.C2A # 8 155 9 152 192 72 32.0 5e-13 MARNAHPEVTRTRILDAAQRLFMAQGYEHTSIQDIVDELGDLSKGAIYHHFKSKEAILEE LTNRDNNMQDDFNESVMNRTDLTALEKFRVLWRHSMTKQDHVQIMRAAMPMLSDPVSFAA NMQVWSKHLPERFLPLIEAGVKDGSIPTEYPREAAELLSLLPNYWLMPYFYPVTLPEMEH RIRCLATMLDAIGVPIFDDELITVAAKGMMTFAGEPEKGSE >gi|316915556|gb|ADCN01000033.1| GENE 22 25643 - 26920 1667 425 aa, chain + ## HITS:1 COG:PAB0724 KEGG:ns NR:ns ## COG: PAB0724 COG0477 # Protein_GI_number: 14521293 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 21 390 1 365 418 121 25.0 3e-27 MNSTVKPENDIAGTATQRPLLSRDFVLLVAGQGISLFGNVMLRFAMSMWVLDETGSATIF ASVLAISIVPTILLSPFGGVLADRVNHRTIMVALDAISAVLVLASAIVFATTGFHIVAIA TMQVLLAVLGAFETPTVQAALPQMFRQYGPATMRQGMAVINQVQQLSSLLPSFLGGVLYA MFGIRLMMIIAIASFAGAAALECFIRLSAPDRGDEELPTPLEDLKAGVRFLIKDRPNVFR LLLFAAALNFVLIGYSGVGFPYTIRTVLGFDATVYGIADGLIGVSGVAGAFIAGLFAAKL TMRWLPGLMATLTLAMVPQGIVFLLPVDAWTKLVVLIVFTCGTMVASCFTNLIAVPAIQL STPEAMAGKVMSMAAAVSMCAQPLGQMVYGWAYDQMPVAIVLFITTALFAVLTVLMVPLA KQFED >gi|316915556|gb|ADCN01000033.1| GENE 23 27007 - 27939 1049 310 aa, chain + ## HITS:1 COG:STM3121 KEGG:ns NR:ns ## COG: STM3121 COG0583 # Protein_GI_number: 16766421 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 21 296 18 287 292 73 26.0 5e-13 MATLNPQSLVTLWQIEQYGSFSATAKATGWSQPAISQQIKKLEAQCGSTLVQRTSHGVEL TATGSMLARHGEAIADRLERAAREVEDYRHHRFDHLHLVAPPSICSTIAARTVVKLSMFT DIELSLIQMEPPEAIGLISQGKADTAAVFRYSSIPNFLHIGDDLTFHSLGYDPMRLLVRR SSGIAKRFEETGEPVPLSAAKDEHWIAGCPTCRANLVKLATRAGFKPDIRHCTDDYWATQ NLVEVGMGVSLVPALDTHINLQGDLVACPIADDFAAREVGIVTRAGDHRPALGSLLEELE RTSLKYLSAK >gi|316915556|gb|ADCN01000033.1| GENE 24 28039 - 29286 1411 415 aa, chain + ## HITS:1 COG:MT0081 KEGG:ns NR:ns ## COG: MT0081 COG1168 # Protein_GI_number: 15839454 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Mycobacterium tuberculosis CDC1551 # 26 409 7 385 390 224 35.0 2e-58 MNNIPQSTTLSNTTAGTSCFDANHIDVTTIEDLEQVGSDKWTRYPGCIGAFIAEMDYGLA PCVAEAIEEATERGALGYIPDPWKKEVARSCAAWQRRYGWEVDPTCIRPVPDVLEAFEVF LREIVRAGNSIVVPTPAYMPFLSVPRLYGVEVLEIPMLCAGAGESSGRNDEWLFDFDAIE QAFANGCHAFVLCNPHNPIGKVLTREEMLRLSDLAAKYDVRIFSDEIHAPFVYQGHTHVP FASINRQTAMQAFTSTSASKSFNIPGTKCAQVILTNPDDLELWMRNAEWSEHQTATIGAI ATTAAYDGGAAWFEGVMAYIERNIALVNEQMRTRFAKVRYVEPQGTYIAWLDFSPLGIGD PANYFFKKANVALTDGRECGEVGRGCVRMNFAMPYPLLEECFDRMAVALEADGLL >gi|316915556|gb|ADCN01000033.1| GENE 25 29335 - 30660 1760 441 aa, chain - ## HITS:1 COG:CT455 KEGG:ns NR:ns ## COG: CT455 COG0766 # Protein_GI_number: 15605182 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Chlamydia trachomatis # 9 438 4 432 444 375 47.0 1e-104 MAENPDDVLHVEGGKPLNGTIKVRGAKNFVSKAMVAALLAPGKSVLKNVPEIRDVHVVSD LLRLHGVDVDVDGANGIVTIDASRVQLADVADVDTLSGSSRIPILFSGPLVHRLGEAFIP ALGGCAIGGRPIDFHLETLRKLGATVDKEHKDGIHITAPNGLHGAKIHLPYPSVGATEQT LLAAVLAEGKTELSGAATEPEIMDLVCVLQKMGAIISVDVDRTFRIEGVKELQGYTHTSL TDRIEAASWASAALATHGDIFVKGATQPEMITFLNVFRKVGGKFEVTDKGIRFWHPGGDL KPVAIETDVHPGFMTDWQQPLVVALTQANGLSIVHETVYENRFGFTKPLVEMGATIQLYR ECLGSLPCRFRQRNYKHSAVIFGPTPLTGRDIDVPDLRGGFSHLIAALAASGPSDVHGIS LIDRGYADFRGKLEALGADFD >gi|316915556|gb|ADCN01000033.1| GENE 26 30909 - 32255 1941 448 aa, chain + ## HITS:1 COG:SPy1150 KEGG:ns NR:ns ## COG: SPy1150 COG0446 # Protein_GI_number: 15675127 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Streptococcus pyogenes M1 GAS # 1 445 1 454 456 310 37.0 5e-84 MTTVAVIGCTHAGTFATTSILAEHPDWTVHVFERNGTLSFLSCGIALWVGDHVSDPKKMF YSSPAALAEAGATMHMRTDVTSVDLDARTLTYRALDEAGDPAEQTLAFDKLVVTTGSRPV IPPIPGIDSPHVLLCKNWDHAIAIKEKAKTAKSAVVIGSGYIGAEIAEQFSVTGVKTTLV DGLDRPLANNFDKTITDQVAAAFEEHGVTLALGQKVVEFRDNDDDTVTVVTEKGEYTAEM AILAVGFLPNTDLLKGKVDMLPNGAIVVDDYMQASAPGVYAAGDSATVFYNPTGQHDYIP LATNAVRQGLLVGRNIETPTVKYMGTQATSAVQLYDLSLAASGLTRAGAERRGLTVRETS LTEDYRPDFMLTTTPVTSILTWDPETRKVKGGQFCSKADISGAANVISMAIQAGFTIDQL ANVDFLFQPNFDKPVYYVGAVAMKAAAE >gi|316915556|gb|ADCN01000033.1| GENE 27 32461 - 33588 1356 375 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1849 NR:ns ## KEGG: BLJ_1849 # Name: not_defined # Def: dihydroorotate dehydrogenase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 375 1 375 375 717 98.0 0 MSDFEPFYDVSRSYEDNYEQGPFGAFAEALKDGNGADAAGTTSEGASEGALATFLGQPVN LPFGIPAGPLLNSRFTTAAFHMGFDLATYKTVRSRAWGCNPFPNVLAVHPKSADGSLTPG SAELDEGVLADTNYETPISISNSFGVPSQSPDAWQPDMRAAIEAAGPGQVLVPSFQGSRV EGMSEEEYIADHATTARLVKETGAKLMVMNTSCPNEGHNRLLCHNPLLVGRITEAVKQEI GDIPLMVKLAYIPSDDALELMVRSTVGHGTVQGFSTINTISAKLVDANGNQALPGAGRDR SGVCGNAIRGAGLDMVARLAAIREKLGLDFAINGVGGVVSPADYQAYRDAGADSVMSATG AMWDAELAHKIKASR >gi|316915556|gb|ADCN01000033.1| GENE 28 33628 - 34656 827 342 aa, chain - ## HITS:1 COG:no KEGG:BL1264 NR:ns ## KEGG: BL1264 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 342 220 561 561 651 100.0 0 MPATMPAAMPVVMPIDPRRVWRTWRRKVVNRVMGLTLAYEGMMLLGAMVATIIVGVITAS DLSGVQWDGIISLISVFVAFGFLLLMRHRDIFTCEFWLGGQHRDSYGEPNQLGHISQYGG GRMQPLWALMFIVLGMGVQGIVMLVQVAFSRLGTDLASPTSDSIAESSVTVSMWLYVGLV APICEEVLFRGVLMKELKPLGKNFAIVTSAMVFGLFHDDVVQGTFAFLFGLILGFVAMEY SLVWSIALHIFNNAILSGAIDTLAGNYLDDNAYLIFSLSLSVIGVIGSIIIFVIYGKEMR QYHRTNRSIPDTYFGWAAPTFIIFVVANAAFAIISFVGAMMG >gi|316915556|gb|ADCN01000033.1| GENE 29 35312 - 35464 232 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291516556|emb|CBK70172.1| ## NR: gi|291516556|emb|CBK70172.1| hypothetical protein [Bifidobacterium longum subsp. longum F8] # 1 50 20 69 69 87 100.0 2e-16 MSVEESAATPVLVAAVDNDRMALLALKGILPQLLPAAQWMWGAGTSETFV >gi|316915556|gb|ADCN01000033.1| GENE 30 35631 - 36323 1210 230 aa, chain - ## HITS:1 COG:Cgl1285 KEGG:ns NR:ns ## COG: Cgl1285 COG0066 # Protein_GI_number: 19552535 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Corynebacterium glutamicum # 1 198 1 195 197 252 63.0 5e-67 MEKLTTLTGVGVPLRRSNVDTDQIIPAVFLKRVTKSGFDDALFYAWRRDPNFVLNKPEYA GKGQILVAGPEFGIGSSREHAVWALHDYGFRVVIAPSFADIFYGNTAKNGVLAAIMPQES VELLWKLLEEEPGREMTVSLETRTVTCGDVTLPFEVNDYVRWRLMNGYDDIDLTLQHEDD IAAYEKMRAEKFPFKPKTIPAKHWAEERIESAREPEDADWTGPLADRGII >gi|316915556|gb|ADCN01000033.1| GENE 31 36406 - 37809 1771 467 aa, chain - ## HITS:1 COG:ML1685 KEGG:ns NR:ns ## COG: ML1685 COG0065 # Protein_GI_number: 15827896 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Mycobacterium leprae # 4 467 18 484 485 667 69.0 0 MGTTLAEKVWADHLVRKGSDGAPDLLYIDLMLMHEVTSPQAFEGLRLAGRKPRHVDQLIA TEDHNTPTVDIDRPNPDETSALQLTTLEKNCKEFGVRLHPLGDADQGIVHAFAPILGLTQ PGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVMATQTLSLKPFKTMAVNVNGKLPADAT AKDIILAIIAKIGTGGGQGYVIEYRGEAIRNLTMDERMTVCNMSIEAGARAGMIAPDETT FEYLKGRPHAPEGELWDQAVAYWKTLKTDDDAVFDKVVDIDATKLGPYVTWGTNPGQGLP ITASVPEPGKIADATKRAAAERAITYMGLKPGMPIKDIAVDTVFIGSCTNGRIDDLRQAA AIMKGHRKAENIHRVLVVPASSRVRLQAEKEGLDKVFKDFGAEWRNAGCSMCLGMNPDKL VPNERSISTSNRNFEGRQGKGSRTHLASPAVAAATAIRGTISSPADL >gi|316915556|gb|ADCN01000033.1| GENE 32 37855 - 38091 70 78 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1852 NR:ns ## KEGG: BLJ_1852 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 11 78 1 68 68 122 95.0 4e-27 MFVVLAYVLAMGPAMSMPDIEIRSNDGLNMTRIRLEHDLVMTRFRSRHVSSASTNALSTS WPPCETLPQFAISLCEMA >gi|316915556|gb|ADCN01000033.1| GENE 33 38103 - 38903 950 266 aa, chain + ## HITS:1 COG:MT3067 KEGG:ns NR:ns ## COG: MT3067 COG1414 # Protein_GI_number: 15842545 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mycobacterium tuberculosis CDC1551 # 31 246 38 252 267 186 52.0 4e-47 MTDSQEEPLNNSLTESEPVEDTTAKDDGEIHSGVGVLDKTVKILDALESGPSTLGQLVAA TGLARPTAHRLAIALERHRFVLRDQHGRFVLGSRFAELAAAAGEDRLLTAAGPILQTLLD RTGESAQIYRRQGDQRVCIAAVERTSGLRDSIPVGAMLSMEAGSAAQILLAWEDSDRLHQ GLRHAKFTATKLAAVRKRGWSESVNEREEGVCSISAPIRNASGQVIAAISISGPTGRMGA APGRRYAPLVMAAGKYLTEALVKAVR >gi|316915556|gb|ADCN01000033.1| GENE 34 39070 - 40443 1163 457 aa, chain - ## HITS:1 COG:YLR361c KEGG:ns NR:ns ## COG: YLR361c COG1409 # Protein_GI_number: 6323393 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Saccharomyces cerevisiae # 16 153 231 357 578 65 28.0 3e-10 MSSKPRIKPADAEDGRPVSISARLGRLQFHYSGKFRVLQIADIQDGPKVSKDTITLIEAS LDATRPDLVIFSGNQIAGYDPAFADSFRKRRWCDEPIAESALNHTRALVRKAIGQFTEPL AARGIPWAVTYGNHDFQCGLSNAELDGIYREFPGCVNPPSETLPNQIAYTCGAGGAVQTP SGATGSGAGITAKADTLGVVDDAGADAVVPSAVSSPASAVGSGEPGTFALPVMDVDHTRN VLGLVILDSGDYVHGGGFGAPSPAALAFLNAVPDRIGAKSMVFQHMPMPEYYNVLKPVAA NAAFAMQGYRSHADTYYVLDELQTQPGGYLGEGISCPDTSGEFELLREGYFGVVAGHDHR NGFVGEHEGLLLIATPTCGFNTYGPAPAKRATRLIEFDIRHPYEPRTQLLEFGELVGKPS SKRAYTYAVNQTAPGEGEGDDLLRKPSLWSQLSGLFR >gi|316915556|gb|ADCN01000033.1| GENE 35 40948 - 43185 3221 745 aa, chain + ## HITS:1 COG:Rv2984 KEGG:ns NR:ns ## COG: Rv2984 COG0855 # Protein_GI_number: 15610121 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Mycobacterium tuberculosis H37Rv # 39 738 48 740 742 746 56.0 0 MAQIFDAPSKAILRSQIAEHIAENDNNDRRVDQEGEAPLPKDRFFDRELSWLKFNQRVLE CAENEDMPLLERANFAAIFASNLDEFFMVRVAGLKRRIDSGIAVPSAAGLSPRQQLRAIS ETAHRLQDEHAHYTIDTILPELEKERIVLLTWDKLTSSEQERLSRYYRQQVFPVLTPLAV DPAHPFPYISGGSINLAVIVENPASGKSHFARVKIPGNLPRLVPVDDMTDEESKDERYGF IAMEKLIAAHLESLFPGMIIKEARSFRVTRNEDIDVEEDDAENLLNAMEKELLRRRFGPP IRLEITDTTSPFLSQLLADQLGVSQDEVYRLPSPLDLTVLFELGSVDRPDLKNRPFVPTT NRQIAEVESSRAQDIFAAIRERDILLHHPYDSFSTSVQAFLAQAAADPKVLAIKQTLYRT SSNSPIIDALIDAAHAGKQVLALVEIKARFDEDANIAWARKLERAGVHVVYGIVGLKTHC KLIEVVRQEADGLRRYCHVGTGNYNPKTARLYTDLGLLTCDPVVGQDLTRLFNQLSGYAP KSSFHRLLVAPRTVRTGLIQRIRREEDAARAGKEAWIKIKVNSIVDEKTIDALYRASQAG VKIDIVERGICALKPGVPGLSENIRVRSILGRFLEHSRIYAFCNADGPQIGEGPASGPEV YIGSADLMHRNLDRRVEALVRVTAPEQIDELIKYVDLQMADSTMSWHMQPDGTYVLHTKD DEGRPLVDSQEYLIRKHQRRPNSHN >gi|316915556|gb|ADCN01000033.1| GENE 36 43343 - 44542 863 399 aa, chain + ## HITS:1 COG:ML1682_1 KEGG:ns NR:ns ## COG: ML1682_1 COG0494 # Protein_GI_number: 15827893 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Mycobacterium leprae # 81 217 33 143 143 79 35.0 1e-14 MRRIVEAAGGILYRWKDDAEPTRASSPSVKSNIATDGTIIANTADSDGETTAAPGASDAA STPDPAQADSPATADNVLNRIELCIVHRPKYDDWSWPKGKVDPNESHRHAAVREIGEESG LPVELGPYLGDIEYPLSEEGRKQRHTKDRSADTKHIQFWMATPISAIDNLRRTHAFGPVH RADIGEIDEVLWLTPAEARKKLSHSTDKDILALFVDRVQEGVLDAVPVIIVRHGKAEARK LWKGSDANRPITPRGAAAAYALNRELACFNPTRLATSPWVRCQETLEMFAWQTGRDMVHL DPLTEDAYAAAPDTAWECLLSEIEFALERRQPIAICMHRPVIGGMFGHLRSMCVAPSLSK RLIAKTPFMPTGTAVALFVTPTPHGPKIIDIQKVQPLVY >gi|316915556|gb|ADCN01000033.1| GENE 37 44532 - 45353 718 273 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1857 NR:ns ## KEGG: BLJ_1857 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 273 1 273 273 422 99.0 1e-117 MSTRPAFPDSSNSSAAAAAAHAAHNGAAGSLGPGFGSLRAAGAAFGPARMGSSRPSRPAQ LDPAVADGLAGGMDPQALSEMSHLSAAALLDRVRHSEDPAVVERVLTLVETVGVDEIAEL WSDAEPDSLPGVLWRLYMLRTWMRSNRDSIAHLWRLGEPVATTASAIAGVDQAPSEDDIV RLADSILSGAFVGDFAVALERAAAFTDVVALGLRVEARRMVTRAEANGGFSSDADEKAVR TKAARLMHTAGSLMATAKDFQHGANLWRRGRLE >gi|316915556|gb|ADCN01000033.1| GENE 38 45613 - 46923 593 436 aa, chain - ## HITS:1 COG:MT3270 KEGG:ns NR:ns ## COG: MT3270 COG1373 # Protein_GI_number: 15842758 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 35 434 54 445 454 82 26.0 1e-15 MNDLSGRDGTLTRPDYRSRVVDSRLSKLLKAFGAVEIVGPKWCGKTWTALSRSRSVDRLD DVAVFAAAQTDPALVLMGEEPHLVDEWQDVPQIWDAARRHIDDNANRKGQLILTGSAIPK DRDAIHHSGTGRIARLRMWPMSLAESGESTGAVSLSDLFEGKFEPAECNTSIEDIARWCC RGGWPANLELDDEFALEIPGEYIASVLDISVPKMKKNPETARALMRALAVNISQAPKYAT LAADMAYGDERREPDTQTVKSYLEMFKDLYLLTDLEGWEPPLRAKSRVRTKPKRYFVDPS LPAAVLGAAPNTLMRDTQTLGDLFETLCIRDLNVYLSAMPGAGNRIAYYRDDKGLEVDVI IELSDGRWGAIEIKLSDLKVNDDNADKLKSFRNKICGNPMAQVRDPEFMMFLTGRGGKAY RRNDGILVVPIATLGA >gi|316915556|gb|ADCN01000033.1| GENE 39 47012 - 47173 69 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLIGLDLWVIRLFAAIGQLQQDNALSVPRSASDTSERVKRKKQHGVKQGMKLV >gi|316915556|gb|ADCN01000033.1| GENE 40 47227 - 47868 1082 213 aa, chain + ## HITS:1 COG:SA1914 KEGG:ns NR:ns ## COG: SA1914 COG0035 # Protein_GI_number: 15927686 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 2 210 3 207 209 204 50.0 9e-53 MELHVLNHPLVEHKLTVLRDKNTPSSTFRELVSELVMLEAYEATRNLSVVAAPIETPVAP MTGKKLASPRPIIVPVLRAGLGMLDGMTRLIPTAEVGFLGMKRDEEHPTQQVTYANRLPE DLSGRQCFLIDPMLATGGTLVAATHYLAERGAKDVTAINIIAAPEGIKYVEEHIDPSIDF KVVVCAVDERLNDKCYIVPGLGDAGDRLYGVID >gi|316915556|gb|ADCN01000033.1| GENE 41 47916 - 48395 669 159 aa, chain + ## HITS:1 COG:CAC3536 KEGG:ns NR:ns ## COG: CAC3536 COG1576 # Protein_GI_number: 15896772 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 159 1 159 159 186 58.0 2e-47 MQIDIIAPGRVKERYLRDAIDEYSKRLSRYCKLNIIEVADEKTPDHASEGVDRQIKAREG ERIAKHLKDGAFVIALAINGKQLSSEELAAKINDLGLRGTSHIQLVIGGSIGLDDAILRR ADFLLSFSKMTFPHQLMRVILLEQIYRAYKINAGEPYHK >gi|316915556|gb|ADCN01000033.1| GENE 42 48591 - 49700 1330 369 aa, chain - ## HITS:1 COG:CC2157 KEGG:ns NR:ns ## COG: CC2157 COG0584 # Protein_GI_number: 16126396 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Caulobacter vibrioides # 112 364 35 255 257 112 32.0 1e-24 MSSKLWRNVALAGVAAAGAAVWAVAPRTFNDKRRNFVPSIPEVWYAHRGLHDAGSGLVGY TDIADYGGDNPVSAQADTTERSIAENDDYVSLARRMAVKAGYGSADMTGPIAPENSLAAF AAACEAGYGIELDVQLTLDGQVVVVHDADLLRVAGDPRRIEDLTYDELARIPLFPNGESG DLKAEPLPGAAANPPLVVTPSAAPKGYYQHVPLFSDVLDVVAGRAPLIVEYKFSNNRAWD ERSEELMEKGHALLEAYDGPYVIESFHPGAVNWYKEHHPEVCRGQLSWPAKLSKNGAAEW AAGLLAFDWLSRPDFVAYDWTGGASPQVKLARSMGAMPVSWTVRSSDELAQCAPYFDRHI FEAFVPDAV >gi|316915556|gb|ADCN01000033.1| GENE 43 49726 - 50799 826 357 aa, chain - ## HITS:1 COG:NMB0349 KEGG:ns NR:ns ## COG: NMB0349 COG0008 # Protein_GI_number: 15676264 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Neisseria meningitidis MC58 # 1 324 14 275 295 155 34.0 1e-37 MHIGNVYAMLGAWLSARSRGDRMLMRIEDVDKPRVVAGADQLMMDDLHWLGLDWDGEPMF QSQRTERYEYALECLRSQGVLYPCFCSRADIRAASAPNEGDGFMVYPGTCRRLLHDHPDE VRARLVRGDQHSIRIAMPESAAGEKQRTVPDDSAALSGAVPPEQQGDAGIVDGVACFNDR VYSPQHYDLAREVGDSVIRRADGLFGYQLVVVVDDLDMGVDDIVRGRDLLRSTALQMWIR QCLLAGGFEPECGNTEKPLAEHPEYAHLPLIDNAAGRRLAKRERSLDMGALRARNVTPEQ IIGYCAWLLRLQPTPIPCKPADLLADFSWEPLRANHLDRALKPDDPTTPQWLAEALG >gi|316915556|gb|ADCN01000033.1| GENE 44 50982 - 53651 1568 889 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 4 863 5 808 815 608 40 1e-173 MEQKFTTMAQEAVGDAIQSASAAGNAQVETLHVMDALLRQENGVARSLIEAAGGDPQAIG AAVRNALVALPSASGSSTSQPQASRQLTAAIAQAEKEMQQMGDEYVSTEHLLIGIAASKP NQSAEILEKNGVTAASLRKAVPGVRGGAKVTSPDAEGSYKALEKYSTDLTAAAKEGKLDP VIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPTTLQGKKLIS LDLGSMVAGSKYRGEFEERLKSVLNEIKNADGQIITFIDEIHTIVGAGAAEGSMDAGNML KPMLARGELRLIGATTLDEYRENIEKDPALERRFQQVFVGEPSVEDTIAILRGLKQRYEA HHKVTIGDDALVAAATLSNRYISGRQLPDKAIDLVDEAAAHLRMELDSSPEEIDELQRKV TRLEMEEMQLKKAEDPASKERLGKLQAELADTREKLSGLKARWDAEQAGHNKVGDLRAKL DDLRVQADKYTREGNLAEASKILYGEIPSIQKELAAAESADAESTDASAANPADEPMVPD RVDADSVAEIVSDWTGIPVGRLMQGENEKLLHMEDYLGKRVIGQKEAIAAVSDAVRRSRA GISDPNRPTGSFLFLGPTGVGKTELAKALADFLFDDEKAMVRIDMSEYMEKASVSRLIGA APGYVGYEQGGQLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTVDF KNTILIMTSNLGSQFLVNEDMDADAKKKAVMDAVHMNFKPEFLNRLDDIVMFHPLTREEL GGIVDIQVAGVAQRLTDRRITLDVTDSAREWLANTGYDPAYGARPLRRLVQTEVGDQLAR MLLAGKVHDGDTVLVDQTGGEHLELSAWASDQIVSDNPDVSVDNVTEDK >gi|316915556|gb|ADCN01000033.1| GENE 45 53870 - 55423 1999 517 aa, chain - ## HITS:1 COG:FN1406 KEGG:ns NR:ns ## COG: FN1406 COG2986 # Protein_GI_number: 19704738 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Fusobacterium nucleatum # 3 517 2 511 511 374 41.0 1e-103 MAEQTVTVGVGALSIEDVIAVARGGAKVAISDESKHEMALSRAVIDHLADDTVPHYGIST GFGALASTSIPKEQRAQLQKSLIRSHAAGAGPEVEREVVRGLLVLRLSTLCTGRTGVRPE TAQVYADMLNAGITPVVYEYGSLGCSGDLAPLAACALVAMGEGEARNADGLKIGGGEALR AAGITPVDLKEKEGLALVNGTDGMLGMLCMAITDLRLLLKTADVAAAMSVEGMLGNDRVF AADLQALRPHRGQGDSAANIARMLKDSGLIEAGRPGSTVRVQDAYSLRCTPQVHGAARDT VEYAASVAGVELASAIDNPCVTLDGRVESNGNFHGAPLAYVLDFLAIPTADVASISERRT DRFLDVARNRGLPAFLAGDPGVDSGFMIAQYTAAGIVSEMKRNAVPASVDSIPSSAMQED HVSMGWGAARKLRRSIPAFARVLAVELLCSCRSFDFRKPYRPGAAGSAVYHVVRKYANEI GPDVRDTWTTPQIEGVAEAILSGEVLAAAESAVGALK >gi|316915556|gb|ADCN01000033.1| GENE 46 55380 - 55640 60 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239620929|ref|ZP_04663960.1| ## NR: gi|239620929|ref|ZP_04663960.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 15 86 1 72 72 119 95.0 5e-26 MLSAPTPTVTVCSAMLIPFYICAAFRIYDICGTCFAGDPRLPAFAHRTCPSTAGDANATN RSPSNQTLAISPQSDARHKPLRPSCV >gi|316915556|gb|ADCN01000033.1| GENE 47 55669 - 56544 722 291 aa, chain + ## HITS:1 COG:PA3508 KEGG:ns NR:ns ## COG: PA3508 COG1414 # Protein_GI_number: 15598704 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 39 281 12 252 277 110 33.0 3e-24 MSHASQQYAFTEPRTVKRAQVKPSEREHQTSSSAPRVSLAPAADRTLDILEFIASNGQTQ AATLARELGIPRSTVYQLLEILERHGLVTRLAEQRAYGIGLKTFELGSAYSRQHRVSQVA HPVLARLVDETGENGHLAVLHGNEIIYVIEERAAHRPPLVSGVGVRLPSHLTATGRAILS ALPRNQVRALYPNRQAFTDRTGIGPKSPKELEATLAETQRTGFAEEHGDVTPGFDSYAVA VRDYNDFPIAGLALTFVSGSLRPEQERSLKTKLRLAGTELSRRLGAVGSLT >gi|316915556|gb|ADCN01000033.1| GENE 48 56541 - 56717 203 58 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1866 NR:ns ## KEGG: BLJ_1866 # Name: not_defined # Def: permease # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 58 1 58 58 80 100.0 2e-14 MRIREIIVLGSFAPITIFSTKFTDSLTGNAKLAGFSLTVTAIISLVVMTALHALLPGA >gi|316915556|gb|ADCN01000033.1| GENE 49 56790 - 57611 1243 273 aa, chain - ## HITS:1 COG:MA0585 KEGG:ns NR:ns ## COG: MA0585 COG0179 # Protein_GI_number: 20089474 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Methanosarcina acetivorans str.C2A # 55 271 37 244 244 174 44.0 1e-43 MRLARFSLNDSPRYAFVQKDETDGKDYLIELDGHPLAGDQVKPTGTRYPVDGDGIRLLSP VIPSKVYGLAKNYEAHAQFMHEAGHSEIAHAPEDMVIFTKPSTSVIGPDDPIVYPACSKD MNFEPEVAVVMGRIAKNVTVENAMDYVLGFTCVNDVTLRDLQGIDPTWTRAKGFDTSCPL GPWIVMRDDLDWKDAKISFTLNGEDVPMASGTTANLIHGIPEQIAAISSFSTLLPGDVIM TGTPNASGHLDPGDETIVHVEGIGDLRNVIVRA >gi|316915556|gb|ADCN01000033.1| GENE 50 57714 - 58925 1041 403 aa, chain - ## HITS:1 COG:no KEGG:BL1246 NR:ns ## KEGG: BL1246 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 403 12 423 423 597 96.0 1e-169 MTDPNVNPNGQVPWQQADANPTEPLNAMTAETGTAANNAPTQAIAAGEQPTQAFTPVEQP TQPFTPAEQPTQPFAPVNQPVPPTQALPPVTPAAAPAPAPAAPNSPYPGAAPAGGSVPPV YGSVSAPVYPGGGAVPPQTPYNPYMQGGQPNGQPGWSGSYGSVPPEANQKYNGLAIAGFI CSFLVSLLGLILSIVGLNQIKKQGGKGKGLAIAGIIISAAGMVIQVILVIALIVGGVSYT SKAIDEAKTDSFYSQSSSGNGDSSDKSKAQDNLDDALDDTLGETHDDLTDGDYGLYDSIQ DFVDSLEFKDSIESEADTFADTGITFNYRVDGDTLVYEYVLDDSYASLGDTAASSLDAMD STYQSTANLLGSMCKTSSGKASLRVIMHTQSGQSLYDKTWTEK >gi|316915556|gb|ADCN01000033.1| GENE 51 59146 - 60324 1667 392 aa, chain - ## HITS:1 COG:ML0092 KEGG:ns NR:ns ## COG: ML0092 COG0562 # Protein_GI_number: 15826927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Mycobacterium leprae # 9 391 6 386 413 440 56.0 1e-123 MADSVEYPDLVIVGAGLFGLTVAQQAVEHTGARVRIIDIRDHIGGNAYSYFDEETGAEIH KYGAHLFHTSNKRVWDYVNRFTSFTNYVHRVYATHDGEVYPLPINLGTINQFFHAHYTPA EAQKLIAGQAGELAGTDPANLNDKGIQLIGRPLYEAFIKNYTGKQWQTDPAELPAAIIKR LPVRFNYDNRYFKDTWEGLPADGYTKWMERMIDDPRITVSLGVDFFDESQPYNKEALKAA GVPVVYTGPVDRYFGYELGDLKWRTVDFKEVRYDEGDHFGCPVMNFSDADVPYTRAIEFK NFNPERRDAQNPDKTVVWEEYSRFAERGDEPYYPVNTDADKALYARYEAKAAAEPNTVFG GRLGTYKYYDMHNVIDTALTAYEEQVAPLLKK >gi|316915556|gb|ADCN01000033.1| GENE 52 60618 - 60893 83 91 aa, chain + ## HITS:1 COG:no KEGG:KRH_05180 NR:ns ## KEGG: KRH_05180 # Name: not_defined # Def: hypothetical protein # Organism: K.rhizophila # Pathway: not_defined # 4 82 20 98 140 80 53.0 2e-14 MTAAFPKALVTGYESLIKNMTCDEKDRHVLAAADYLPAQTLVTFNTKDFPETSTQPLRIE VKRPDDFFLDVLDLDPGRVARVCHTALLSYK >gi|316915556|gb|ADCN01000033.1| GENE 53 61130 - 62179 1195 349 aa, chain + ## HITS:1 COG:SP1771_1 KEGG:ns NR:ns ## COG: SP1771_1 COG0463 # Protein_GI_number: 15901601 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 9 233 7 215 259 129 33.0 7e-30 MPNNATPLISVIVPVYNAEDYLRYCIDSILQQSYTNLEVILVDDGAKDSSPAICDEYAAQ DSRVTVIHQENGGIAKAQNTGLDAAHGEYIAFSDNDDILDRRNIEYLLHALQSTGADMSK ARWRQFGVSQLGEVSKEAETGAQAPGKITVFEHPLAAYQTVFCKSLRLLGSKLGRNTEAR YFNEANWCRLYKRELWDGLRFPEGHYAQDIRMAGPLYARMGKVADIDCVLYYWLQEPDSV THSKRTAAFWHDNVLSAAENFQFTLEQGITPCRNYFGLTASVRDEGKGLKALSSEELHDS DWQNHLDDVATMRALISKLSIGERLKCAVLATIRSCENVVYDNRIHSMK >gi|316915556|gb|ADCN01000033.1| GENE 54 62578 - 62980 431 134 aa, chain + ## HITS:1 COG:MT0947 KEGG:ns NR:ns ## COG: MT0947 COG3328 # Protein_GI_number: 15840343 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 10 134 25 148 439 136 58.0 9e-33 MTPTKKPDAEKRNAEREAALTFVRMAKEKGLDLTGPDGLLKQFTKSVLETALDEEMTEHL GRAKHKKSKDGRAANTRNGTTAKTVVTDSVGPVRIEVPRDRDGSFEPVVVRKRQRRLPGV DEVVLSLYARGLTT Prediction of potential genes in microbial genomes Time: Fri May 13 13:15:37 2011 Seq name: gi|316915554|gb|ADCN01000034.1| Bifidobacterium sp. 12_1_47BFAA cont1.34, whole genome shotgun sequence Length of sequence - 1284 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 91 - 1282 1313 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|316915554|gb|ADCN01000034.1| GENE 1 91 - 1282 1313 397 aa, chain + ## HITS:1 COG:MT0947 KEGG:ns NR:ns ## COG: MT0947 COG3328 # Protein_GI_number: 15840343 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 10 389 25 410 439 465 62.0 1e-131 MTPTKKPDAEKRNAEREAALTFVRMAKEKGLDLTGPDGLLKQFTKSVLETALDEEMTEHL GRAKHKKSKDGRAANTRNGTTAKTVVTDSVGPVRIEVPRDRDGSFEPVVVRKRQRRLPGV DEVVLSLYARGLTTGEISAHFQEIYGADVSRETVSRITERVVAEKDEWCSRPLDRVYAAV FIDATVVKVRDGQVANRAFYVAVGVDLEGGRDVLGIWASPAAEGARYWLSVLTELKNRGV DDVFFLICDGLKGLPDAVGAVWPLAIVQTCVVHLLRNTFRYASKKDWDAIKRDAKPIHTA AAARDAMLDKWEARYPAIRRLWMDAWERFIPFLDYDVEIRRVIRTTNAIESLNARFKRSI RARGHFPDEQAALKCMYLTVRSLDPTGKGVFRQVGVS Prediction of potential genes in microbial genomes Time: Fri May 13 13:15:59 2011 Seq name: gi|316915503|gb|ADCN01000035.1| Bifidobacterium sp. 12_1_47BFAA cont1.35, whole genome shotgun sequence Length of sequence - 60093 bp Number of predicted genes - 58, with homology - 51 Number of transcription units - 35, operones - 15 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 402 184 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 450 - 2990 2613 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases + Term 3024 - 3065 7.1 - Term 3006 - 3057 18.1 3 2 Op 1 59/0.000 - CDS 3081 - 3572 820 ## PROTEIN SUPPORTED gi|23336644|ref|ZP_00121850.1| COG0103: Ribosomal protein S9 4 2 Op 2 . - CDS 3595 - 4044 769 ## PROTEIN SUPPORTED gi|23336645|ref|ZP_00121851.1| COG0102: Ribosomal protein L13 - Prom 4207 - 4266 3.9 5 3 Tu 1 . - CDS 4442 - 6607 2593 ## COG1640 4-alpha-glucanotransferase 6 4 Op 1 . - CDS 6775 - 7500 838 ## Blon_2247 leucine rich repeat variant 7 4 Op 2 . - CDS 7526 - 8167 591 ## COG1739 Uncharacterized conserved protein 8 4 Op 3 . - CDS 8229 - 9245 1402 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 9 4 Op 4 . - CDS 9319 - 10662 1429 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) - Prom 10756 - 10815 2.0 - TRNA 11036 - 11125 55.6 # Ser GCT 0 0 - Term 11128 - 11164 -0.6 10 5 Tu 1 . - CDS 11197 - 12144 1168 ## COG5006 Predicted permease, DMT superfamily - Prom 12290 - 12349 2.0 11 6 Tu 1 . + CDS 12301 - 13647 969 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Term 13615 - 13644 -0.5 12 7 Tu 1 4/0.000 - CDS 13674 - 14909 1428 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Term 14934 - 14983 10.5 13 8 Op 1 . - CDS 15024 - 15344 556 ## COG1146 Ferredoxin - Term 15354 - 15404 -0.8 14 8 Op 2 . - CDS 15405 - 16931 2720 ## COG0531 Amino acid transporters - Prom 16983 - 17042 2.5 + Prom 16882 - 16941 2.0 15 9 Tu 1 . + CDS 17012 - 17077 71 ## 16 10 Tu 1 . - CDS 17083 - 18306 1165 ## COG0812 UDP-N-acetylmuramate dehydrogenase 17 11 Tu 1 . + CDS 18278 - 18493 85 ## + Term 18536 - 18566 3.3 - Term 18516 - 18559 8.1 18 12 Tu 1 . - CDS 18580 - 18753 309 ## PROTEIN SUPPORTED gi|23336434|ref|ZP_00121652.1| COG0267: Ribosomal protein L33 - TRNA 18806 - 18882 79.3 # Met CAT 0 0 - TRNA 18887 - 18958 74.5 # Thr GGT 0 0 - TRNA 18960 - 19041 59.2 # Tyr GTA 0 0 + Prom 19113 - 19172 2.3 19 13 Op 1 . + CDS 19350 - 19742 336 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 20 13 Op 2 . + CDS 19752 - 19901 244 ## BL1559 cystathionine gamma lyase + Term 19939 - 20001 5.9 - Term 20509 - 20548 8.2 21 14 Op 1 . - CDS 20574 - 20867 549 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 20959 - 21018 1.6 22 14 Op 2 . - CDS 21040 - 22482 1430 ## BL1557 hypothetical protein 23 14 Op 3 . - CDS 22563 - 23228 348 ## PROTEIN SUPPORTED gi|227982480|ref|ZP_04029735.1| acetyltransferase, ribosomal protein N-acetylase - Prom 23277 - 23336 2.5 + Prom 23153 - 23212 2.1 24 15 Op 1 3/0.000 + CDS 23294 - 23998 177 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 25 15 Op 2 . + CDS 24199 - 24384 325 ## COG2331 Uncharacterized protein conserved in bacteria + Prom 24453 - 24512 1.9 26 16 Tu 1 . + CDS 24565 - 25191 329 ## BL1553 hypothetical protein + Term 25196 - 25232 3.3 - Term 25241 - 25285 10.6 27 17 Op 1 . - CDS 25286 - 25486 239 ## BLJ_1786 hypothetical protein 28 17 Op 2 . - CDS 25489 - 29112 3845 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits 29 17 Op 3 . - CDS 29121 - 30614 832 ## BL1551 hypothetical protein - Term 30787 - 30826 7.1 30 18 Op 1 47/0.000 - CDS 30866 - 31246 598 ## PROTEIN SUPPORTED gi|23336425|ref|ZP_00121643.1| COG0222: Ribosomal protein L7/L12 31 18 Op 2 . - CDS 31355 - 31876 845 ## PROTEIN SUPPORTED gi|23466102|ref|NP_696705.1| 50S ribosomal protein L10 32 19 Tu 1 . + CDS 31875 - 32096 93 ## gi|291516495|emb|CBK70111.1| hypothetical protein + Term 32254 - 32300 2.2 - Term 32029 - 32067 1.1 33 20 Tu 1 . - CDS 32145 - 32975 1025 ## BL1548 hypothetical protein - Prom 33216 - 33275 2.6 + Prom 33034 - 33093 4.7 34 21 Tu 1 . + CDS 33230 - 34624 2365 ## COG2252 Permeases + Term 34677 - 34722 13.5 - Term 34855 - 34912 15.5 35 22 Op 1 26/0.000 - CDS 35051 - 37792 4214 ## COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) - Prom 37812 - 37871 5.1 - Term 38015 - 38056 10.1 36 22 Op 2 . - CDS 38068 - 38337 451 ## PROTEIN SUPPORTED gi|213693121|ref|YP_002323707.1| ribosomal protein S15 37 23 Op 1 . - CDS 38528 - 40687 230 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 38 23 Op 2 . - CDS 40762 - 41580 748 ## COG1131 ABC-type multidrug transport system, ATPase component 39 23 Op 3 1/0.143 - CDS 41631 - 44792 1837 ## COG4403 Lantibiotic modifying enzyme 40 23 Op 4 . - CDS 44804 - 45541 463 ## COG0655 Multimeric flavodoxin WrbA 41 23 Op 5 . - CDS 45581 - 46240 469 ## BLD_1649 lantibiotic response regulator - Term 46254 - 46307 6.6 42 23 Op 6 . - CDS 46324 - 46524 210 ## BLD_1648 lantibiotic prepeptide - Prom 46566 - 46625 1.9 43 24 Tu 1 . + CDS 46637 - 46837 144 ## 44 25 Op 1 . - CDS 46834 - 47994 490 ## BLD_1647 signal transduction histidine kinase 45 25 Op 2 . - CDS 47988 - 48659 154 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Prom 48683 - 48742 2.3 46 26 Tu 1 . + CDS 48777 - 49817 169 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 47 27 Tu 1 . - CDS 49931 - 50617 694 ## BLD_1641 hypothetical protein 48 28 Op 1 . - CDS 50757 - 50924 91 ## BLD_1640 hypothetical protein 49 28 Op 2 . - CDS 50918 - 51430 253 ## BLD_1639 hypothetical protein - Prom 51470 - 51529 1.6 50 29 Tu 1 . - CDS 51563 - 51772 73 ## - Term 51816 - 51855 10.0 51 30 Op 1 . - CDS 51892 - 53136 1695 ## BLD_1638 hypothetical protein 52 30 Op 2 . - CDS 53333 - 55774 2317 ## BL1539 hypothetical protein - Prom 55816 - 55875 4.6 + Prom 55772 - 55831 2.6 53 31 Tu 1 . + CDS 55918 - 56133 66 ## + Term 56304 - 56340 -0.2 - TRNA 56229 - 56302 79.8 # Gly TCC 0 0 54 32 Tu 1 . - CDS 56481 - 58532 2680 ## COG0366 Glycosidases - Prom 58579 - 58638 2.4 - Term 58616 - 58644 0.1 55 33 Tu 1 . - CDS 58645 - 59193 362 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 56 34 Op 1 . + CDS 59114 - 59332 169 ## 57 34 Op 2 . + CDS 59316 - 59522 146 ## 58 35 Tu 1 . + CDS 59648 - 60092 239 ## BLD_0318 transposase Predicted protein(s) >gi|316915503|gb|ADCN01000035.1| GENE 1 1 - 402 184 133 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 114 207 312 317 75 43 7e-13 ARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYFADPYS SWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEAFADEL LELQDQQGCCTSK >gi|316915503|gb|ADCN01000035.1| GENE 2 450 - 2990 2613 846 aa, chain + ## HITS:1 COG:DR0264 KEGG:ns NR:ns ## COG: DR0264 COG1523 # Protein_GI_number: 15805296 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Deinococcus radiodurans # 85 702 48 635 720 462 42.0 1e-129 MKNPPLHRYATRPGLYFTDDGGADVVVRSETADQVWLCVLEPIDEPGAFFQDAIRLFEDP NASFIQQIHEFPVCTRIIEHLYLRETLFRMTGPNYGLWYVHLPKAWDGMRYGYRVDGAWD PKHGVRFNPYKFLLDPYGKGIDGSMELTPAAFSYECDVVDHKVTGSAYGAMSTVDSLGHV PVSVAIDDRDIHKHEGDPQHPHVPWRKTVIYEMHVKGFTANAPWLPEALRGTYAGLAHPT TLAYLQGLGITSIELLPIMAKQDELFLQEHGRKNYWGYSTLSYFAPEPSYATKAAQEKGA AAVRQEVIDMVRALHEAGFEVIMDVVYNHTCEGGVEGPTVCWRGLDDLAYYRHQKSNTGR LEDTTGCGNTLDFTNTHVVTFAIDSLRYWAKRIGIDGFRFDLGVTLARLEGEFTHHHPFL YALRSDLLLGNLKLIMEPWDLGNLGWRTGQFSVPFAEWNDRFRDTARTFWLEDVDGGSDF GRISLQEMSTRLCGSADLFATEPGRGAPASINFVSCHDGFTLTDLTRYRSKHNEANGENN NDGSSVNHSANFGVEGVTDDPDVIAAREQAAMNMIGMLLLSLGTPMMLAGDEFRNTQDGN NNAYCQDNDITWLKWDWMYSTNKTREMRRLETVSRLVALRKSLDLYHHEDFFTRLTQIGL LKPSSRVQWFLPDGTTPMERDWFDLGVRSFTMRLLSNSEVDVCIVVNGTADDRTFRLPPD THWTPKWCSAEINGRRAGHGTQVEECDLNGDTTVWTQHVPDASETVLKMVEEVAMQRTES STENEADTIKFAMPATDHAANGTSSAPRDEVSADMPDAPVDDTPDTPVDDNVWTMPALSI TLMKQV >gi|316915503|gb|ADCN01000035.1| GENE 3 3081 - 3572 820 163 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336644|ref|ZP_00121850.1| COG0103: Ribosomal protein S9 [Bifidobacterium longum DJO10A] # 1 163 1 163 163 320 100 1e-86 MAENTNDSQVVETEEELTNYTTETNAGAGTGTSAIEPGYGTGRRKEAVARVRLVPGDGKW TINGRTLEEYFPSKLLQREVNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALN AIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQFSKR >gi|316915503|gb|ADCN01000035.1| GENE 4 3595 - 4044 769 149 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336645|ref|ZP_00121851.1| COG0102: Ribosomal protein L13 [Bifidobacterium longum DJO10A] # 1 149 1 149 149 300 99 1e-80 MKTFTPKPADLTHDWYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINAD KIALTGNKMGKELYSHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRLAKVQLDR LRIFRGAEHPHTPQKPQVFEIAQVSQQAK >gi|316915503|gb|ADCN01000035.1| GENE 5 4442 - 6607 2593 721 aa, chain - ## HITS:1 COG:MT1831 KEGG:ns NR:ns ## COG: MT1831 COG1640 # Protein_GI_number: 15841250 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 11 717 4 711 724 490 40.0 1e-138 MSEITESEERLARPLIRLAKLVGVGTSYLGMSHDYHEIDDDVLIEVLAALGIDASSESAQ LIAIRRILNERYARLVAPTVLHIAGSEDRVLVNTGILDVPSASITLENGEPYQGTIEVGP GDGSQAYDLDGTFISNAAVVIPADLPIGYHTLHVKVADRVQDATLISAPDRVDLLDPMKG GSLWGWMAQLYSIRSSNSWGVGDYEDLKTMLVDAKQKTGADFVLINPVHAAEPVSPLTPS PYLPVSRRLINFTYIRPEAIAEYATLSEGDKNAVDGLHADTEPLNGDSQLIDRDAMWRSK MHALWIIFKAGRTAERQSVFDQFKADCGSDLEAYATWCLCYDKWGAPNGEESNWERKFNR NSPEIANLRKQYPDTLDFYRWLEWIAAEQLSSAQQAAKDAGMHIGIMSDMAVGVHPSGAD VWWNPERFAKGATVGAPPDMFNQQGQNWSQPPLSPINLETTGYEAYRNMVHGMFARAGAV RIDHILGLFRLWWIPENRSAMDGAYVYYDSDIMLGVLAIEASRAGGVVVGEDLGVVPDHV ADSLSSHGILGCAVEWFEQCDGVFRAPSQWRPYALASVNTHDLPPAAGYLEYEHVKIRER LGLLTGLAEEFEASAKAEQDAMLAMLVEQGYLDADFAEHREDHEADIVDALYHALKGSPC KLLAASITDAVGEKRAQNQPGTNNEYPNWRIPLADAKGNVVPLETLFDTPGAQRFAQIFN S >gi|316915503|gb|ADCN01000035.1| GENE 6 6775 - 7500 838 241 aa, chain - ## HITS:1 COG:no KEGG:Blon_2247 NR:ns ## KEGG: Blon_2247 # Name: not_defined # Def: leucine rich repeat variant # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 241 7 243 243 337 97.0 3e-91 MTDENTTSQQTQPTEAATEAAAETATDTDAQQQDQGAQSAAESAAPVDFEPLTATYERLR HSTDPAELSEFARRPLPDRADQAAFSRATALLEAVAGNPHTPVADRVFLADTMPFPNVLV KLSEDPEPSVRQAVAANGDDKNWLVGRLTKDPVPAVRDTALKNKRTSWKMRLEGAQDPTA DAETLDFLGVLGTESEEGAPAVLSSMVRRAVALNPNTSEAMLAKLANDPSAEVRHAVESR R >gi|316915503|gb|ADCN01000035.1| GENE 7 7526 - 8167 591 213 aa, chain - ## HITS:1 COG:STM3985 KEGG:ns NR:ns ## COG: STM3985 COG1739 # Protein_GI_number: 16767255 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 19 179 18 178 204 122 42.0 5e-28 MQTILNTPDDPAHDSLVEKKSEFIGDAAHVDTLDEALAFVAAIREQHPKARHVAYAAVCG GADGRLSERMSDDGEPSGTAGKPILDVLKQSGTTDCVVAVTRYFGGILLGSGGLVRAYSS AASLAMKAARAARIMTAKRYRVRLEYPQLARFQQILAQLGGSQEDESYAVNVELTAVVPQ DDCARFEERVREAFNAAVVPAPIDMVNIPVPLA >gi|316915503|gb|ADCN01000035.1| GENE 8 8229 - 9245 1402 338 aa, chain - ## HITS:1 COG:MA1334 KEGG:ns NR:ns ## COG: MA1334 COG0111 # Protein_GI_number: 20090195 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Methanosarcina acetivorans str.C2A # 58 334 40 312 319 157 34.0 4e-38 MTEIYETQSERTDLPLVVMPSVLDSMIEPIKAQFPALHDVARVRMFEEFTSDEATIAERL KDADALLVGGYHISDDLLRTISGQGHVKCIVFCGTGVASYLNLDKARELKIRVCNAEHYG DHAVAEHTFALLFELIRRVGQLDKDVKAGNWAWASGDGLQLAGRRMGIIGLGGIGSTVAG IARALGMEVAAWNSHVPPEHFERSGATPVDDLNKLIETSDVISVHLPLNNATRGIVTAEN LAHVKPGTLFINTARSEVIESGALLARLQKGDVPAALDVFDHEPLTADDAICHVPGIVLT PHVGWRADGAFKELTRQMIACLTAYFAGEDYNVVVSER >gi|316915503|gb|ADCN01000035.1| GENE 9 9319 - 10662 1429 447 aa, chain - ## HITS:1 COG:SPy0818 KEGG:ns NR:ns ## COG: SPy0818 COG2843 # Protein_GI_number: 15674859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Streptococcus pyogenes M1 GAS # 81 368 79 355 430 100 27.0 8e-21 MSHIAGQGQHRSNSTRTNRAALIIVFVIVLAVALGIGAWFATHRTDGNGPAHAGVSDVAL NKAKNTPKPVTEHHGNSPDCPDTDCIAMLVNGDLLFHEGLWSHFQGPNPNATDGTAFNFD PLFAPMKQYIQASDIAVCEFETPIAQRGGPYAAYPIFNIPPEVADAARNVGYNACTHATN HSWDQGADGIARLWGTLEANGIAQTGSYKTEADSTKPLVIDSPTGGGKLGLVTGTVSLNG MTADEDWQVDRLREDGDPNHDSDIQRAVDKANKAREQGADVVAIAMHSVQEYLDYADSWQ ISEAHELADTGAFDVIYGAGCHCAQPIENYNGTWIIYGLGNAVTESANTPETLVNNQGVT ARIQFAGKKGVKGSWRVNRIDWVPTANVHQGNYQWCPISSDHPIGTCWDEAYDAQIRQRI WDVIYSMGADQNVVKEWNITQEQAAKQ >gi|316915503|gb|ADCN01000035.1| GENE 10 11197 - 12144 1168 315 aa, chain - ## HITS:1 COG:mlr1493 KEGG:ns NR:ns ## COG: mlr1493 COG5006 # Protein_GI_number: 13471502 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Mesorhizobium loti # 22 301 32 289 298 89 28.0 7e-18 MKKAVVGILNRVPVVLIVIGEALVIYLATAVAKLAFTQLDPLYSVWYRVGFMAVLLLLWR RPWNKAKRAQLFHRDARSWGLVVLLGCSLVLMNTLFYVAISNMDMGIAVSIEFLGPLSVA VITGKSWRERVGIGIAAVGVVLLAGISLANPSGNGTFLYGLIAILIGGSMWGMYIITGRR VAAGGNSLDNLCIAVTIGWLVQSLFLGVPAVAHVVHPKADATWALEPGGSLKLLALLFVI SLMASFIPYVVEQITLRRTTSGAFSVMQSINPAMAVAVGLAFGEIPSVGEIVGVALVICA VIVTFSGDAAPADVQ >gi|316915503|gb|ADCN01000035.1| GENE 11 12301 - 13647 969 448 aa, chain + ## HITS:1 COG:mlr1877 KEGG:ns NR:ns ## COG: mlr1877 COG0389 # Protein_GI_number: 13471787 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Mesorhizobium loti # 42 447 2 393 415 211 35.0 2e-54 MTMSAASCAPHSEHDLVRHSYNGGMSTAPRLEAAKRDWGHDETGCTVLHIDMDAFYASLE VARNPGLKGKPVIIGTGPRAVVSAASYEARKYGINSAMPAARAHRLCPNGIFLPVDMAYY RMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSAALLEWGRPSAIGAWIRAQVAERFHVTC SVGIACNKLVSKMASTNAKPDGMLLIPAARSAEFVQMMPLRGIPGIGPSLEKRLNAWGVH SVAELAQLDEAALTRATGSPAAARGLWAASHGLDSREITTVREEKSIGSEETLAEDTRDM RVVCGLLRSACDEVTSTLRRKGLVARTLTVKLRFADLSYQTRSFTMERPTDTAGVLYPEC VRQLKVMLGLPASAESATPLPKTIRLAGMSTSSLSKAAATAVQPSLDDMLEEADNARGQT SQARLHDAEAALDAVRRKFGNKAAQFGA >gi|316915503|gb|ADCN01000035.1| GENE 12 13674 - 14909 1428 411 aa, chain - ## HITS:1 COG:ML1488 KEGG:ns NR:ns ## COG: ML1488 COG0436 # Protein_GI_number: 15827783 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mycobacterium leprae # 10 410 14 367 367 220 36.0 3e-57 MGFHAYSSPYDWSRIAGFKATAKTVPGGMIDLSVGSPVDPVPSSVQQALVAGADAPNAHG YPVTAGTADLKAAIDTWFRELRGVDLKSINAAAVPTVGSKEAVALMASLLHLGEGDVVVQ PAVSYPTYEIGTQLAGATVVKVDDVTDVDSWVNIPNVKAIWINSPCNPSGEVISADWLTD IVAAARRIGAVVLSDECYALMDWRSVRRNTAASSAPAASASAASVPAAPVAESNEPASDT AFSLSATPCALNPHVCEGSAAGILVLYSLSKQSNMAGYRTALIAGDYRLVKEMAEYRKQI GQIIPGPVQAAMAAGLKDTAAVHEQWRRYRRRLSALVDALKAYGYSAQMPSGALYVWVKA KSGDCWADMAELAKIGIIPSPGEFYGAPAYLRFSATATDEAIRSACERLTA >gi|316915503|gb|ADCN01000035.1| GENE 13 15024 - 15344 556 106 aa, chain - ## HITS:1 COG:Cgl2895 KEGG:ns NR:ns ## COG: Cgl2895 COG1146 # Protein_GI_number: 19554145 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Corynebacterium glutamicum # 1 106 1 106 107 134 67.0 6e-32 MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD LPDEWAWYKDAAVNFFAEVGDLGGASANGPIGKDPEQVAALPPQNQ >gi|316915503|gb|ADCN01000035.1| GENE 14 15405 - 16931 2720 508 aa, chain - ## HITS:1 COG:MT3351 KEGG:ns NR:ns ## COG: MT3351 COG0531 # Protein_GI_number: 15842842 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Mycobacterium tuberculosis CDC1551 # 5 490 6 483 495 385 48.0 1e-106 MQLFRTKSVEQTIAETGEEGRKLKRNLTWWDLSIMGVAVAVGAGIFSVGAQAAAFHAGPA VIISFLIAGIVCGAAVMCYAEFASMIPVAGSAYTFTYTTVGEIMAWIIGWDLILEMLMAG SVISKYWGVYLNDFMRLMGWNANTNLTFGSFHIDIAPIIIVAFFTTLLVFGTKIGARVDG AMTVLKIAIVFFVVIVGFFYVKASNFTPFIPPSQPASTVEGSSAVTGVMTQPLWQFATGM TPSVYGVPGILSGAALVFFAFIGFDVVATASEETKNPHKNVPLGIGVGMLLIIVMYMLVA VVTTGMVSYADLAKQDSPSLATAFELVGADWAAKIISFGIVLGLATVVMVLLLGLTRIVF AMSRDGLLPRGLSKTGKHGTPAALQIVVGAVVALVAAFFDIGVLSDMVNIGTLSAFTLVA ISIPIMRKKRPDLPRAFKMPGSPWIPILIAVANFWLMLNLSVLTWIRFVVWLVVGFAIYF GYGYWHARLGKGDLTETLSAETDKAVNG >gi|316915503|gb|ADCN01000035.1| GENE 15 17012 - 17077 71 21 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSINKTQSPQYMGLITHSINQ >gi|316915503|gb|ADCN01000035.1| GENE 16 17083 - 18306 1165 407 aa, chain - ## HITS:1 COG:MT0500 KEGG:ns NR:ns ## COG: MT0500 COG0812 # Protein_GI_number: 15839872 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Mycobacterium tuberculosis CDC1551 # 4 407 21 368 369 194 38.0 2e-49 MTSFADITTMGVGGPIAHFIEPTTRVGLIEAVEEADSKGLPLVVVGGGSNLLVSDKPFDG VVVRDARRLITVPDEAAPVEGEDRTVHVNAEAGANWDDFVAFTVELGLEGVEGLSGIPGT VGASVVQNIGAYGQEVATSVESVEVWDRDTKTTRDLTPADLRFGYRYSALKTSMYAGPGR PAGRFFPTPRYVVLSVTFALTHSAEGTVGYGQLAKALGVEVGDRMATADIRKAVLAVRAA KGMLEDPTRYALPDMATAKREANILTDLERLASLNEAAGIPVGDDGLPAPDYNRHSCGSF FMNPILTADQAAALPEDAPKFDATLPDGTPGTKTSAAWLIDHAGCHKGYKVDADAPASLS TQHTLALTNRGGASAADIAALARAVQQAVKSAFGVDLVPEPVCVGVL >gi|316915503|gb|ADCN01000035.1| GENE 17 18278 - 18493 85 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVVMSAKLVMAYYLSGAGAISRQSSAETAERPRLNEGGAGFLPFWRPETTERPRGVRSDA GFLPFLTRCGY >gi|316915503|gb|ADCN01000035.1| GENE 18 18580 - 18753 309 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336434|ref|ZP_00121652.1| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] # 1 57 1 57 57 123 100 2e-27 MTMAKSADIRPGITLACTECKERNYITTKNRRNTPDRLELKKFCPRCGKQTVHRETR >gi|316915503|gb|ADCN01000035.1| GENE 19 19350 - 19742 336 130 aa, chain + ## HITS:1 COG:BH1736 KEGG:ns NR:ns ## COG: BH1736 COG0626 # Protein_GI_number: 15614299 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Bacillus halodurans # 54 128 272 342 398 57 41.0 6e-09 MASDLVHHGQSFDDQPLGFGTLAIHLGNGVDAETGAIRRPITLANAYALPYDPSALAIAK HLESLDVVRFVAYPGLESHLHHKVAASQLARPDSGFGGVLSFGLDTDHDGHTRFVSKLNV ITSAVSLGHD >gi|316915503|gb|ADCN01000035.1| GENE 20 19752 - 19901 244 49 aa, chain + ## HITS:1 COG:no KEGG:BL1559 NR:ns ## KEGG: BL1559 # Name: not_defined # Def: cystathionine gamma lyase # Organism: B.longum # Pathway: Glycine, serine and threonine metabolism [PATH:blo00260]; Cysteine and methionine metabolism [PATH:blo00270]; Selenoamino acid metabolism [PATH:blo00450]; Nitrogen metabolism [PATH:blo00910]; Metabolic pathways [PATH:blo01100] # 1 49 459 507 507 105 97.0 4e-22 MFLGEDDERQYLYPPEFHRGFFRLAVGLEDTDDLIRDIDHALVEAGFEV >gi|316915503|gb|ADCN01000035.1| GENE 21 20574 - 20867 549 97 aa, chain - ## HITS:1 COG:MT3527 KEGG:ns NR:ns ## COG: MT3527 COG0234 # Protein_GI_number: 15843014 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Mycobacterium tuberculosis CDC1551 # 3 96 4 98 100 118 65.0 3e-27 MSIKLTPLEDKIIVKQAEAQTQTASGLYIPDNAKEKPQQGEVLAVGPGRRDDKGERIPMD VKVGDKVLYSKYGGTEVHYEGEDYLIVGARDILAILG >gi|316915503|gb|ADCN01000035.1| GENE 22 21040 - 22482 1430 480 aa, chain - ## HITS:1 COG:no KEGG:BL1557 NR:ns ## KEGG: BL1557 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 480 1 474 474 576 98.0 1e-163 MGYESLSTVVVLVIVAIIIVVWLPVRTANGMKRVDEHRQDRYSPSLHIVDAENGRRFGDI KPHKAKGAAMPASTPSARLTSEHIAHVRELRRAAIRRRQILAVCLLAITVLVFAVSFPLH FSPLLALIPFVLLLLVLVLGANASRQARQWERKVVRYERAHSGTGWSKKPSAESKDSKRV NKAEPVAAVTAPAEKPAEQIEDAATEVMEQRQIRRALRDAEIEQAKAKALRQSAAAYQAA EEHAKQSEKSDIAQSAADKPAAEPSAMVDESADRKSAAETSESSATPDASVRTDKSIESD KSVAPRVEPSLTVRDERDERDDAAAAADATSELVSVRPARALDVFDMSTSQDLISFTLGG EHNADNAPESLEIKSTRQVSKAEPVEPAVAEKLIDEARAVKAADDAKAADAGKAVSAGNA VDTEPEQRDDADTDADDEAANAAQRAAFHESEERADVEAPAATTDSLGAGLDSILARRGN >gi|316915503|gb|ADCN01000035.1| GENE 23 22563 - 23228 348 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227982480|ref|ZP_04029735.1| acetyltransferase, ribosomal protein N-acetylase [Thermomonospora curvata DSM 43183] # 42 217 1 177 188 138 38 6e-32 MATIKAVSVFQSIKEAFKLDHQIRPPRLTHPGFPIILRPLTMDDEDGWNEVRWRNNDWLA PWESGDPMHGGSITFNQWVQRQRRNEQHGVGVIFAIEYQMRIVGQISLGAIAYGAMRTGV VGYWVDQRYAGHGFAPMALAMLADWALGDPFGPALHRLEIAILPDNARSLAVVRKVGAHH EGLRERYMYVNGQWRDHVTFALLAEDMGQGFAARLAAAGSR >gi|316915503|gb|ADCN01000035.1| GENE 24 23294 - 23998 177 234 aa, chain + ## HITS:1 COG:MT1021 KEGG:ns NR:ns ## COG: MT1021 COG0212 # Protein_GI_number: 15840417 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Mycobacterium tuberculosis CDC1551 # 25 221 4 184 195 90 38.0 2e-18 MSEADNGMNIGSDHSGTEKTEKMDKATLRHHILSRRKRIPAEERGAAGELLVRRFPAHMI QDGSTVAAYVSMGSEIETRPLLRWLLAHGCHVLVPRLGSGLEIGWSVLDSLESLRSMDAV GGANNAGSCSYPSTVHHRPDEPTGAVLPPEALEKADLVIAPALAVDPQGNRLGRGAGWYD RALARRKPACPLIAVCWPWEVLDTDLPAEPHDVPADGVLTPGGYRRLGESGRLS >gi|316915503|gb|ADCN01000035.1| GENE 25 24199 - 24384 325 61 aa, chain + ## HITS:1 COG:Rv0991c KEGG:ns NR:ns ## COG: Rv0991c COG2331 # Protein_GI_number: 15608131 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis H37Rv # 1 61 1 62 110 59 50.0 1e-09 MPTYHYRCKNCGYDFTEQQSFNDDPITVCPKCSQEQVRKVYSAVPIEFKGHGFYRTDKSG K >gi|316915503|gb|ADCN01000035.1| GENE 26 24565 - 25191 329 208 aa, chain + ## HITS:1 COG:no KEGG:BL1553 NR:ns ## KEGG: BL1553 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 208 13 220 220 333 96.0 3e-90 MVTFSFIKPPARGSLRRRRMADALRRLTAALCVGLAVLFGIEAVLAVVETEPMVVAARSI RRGDIILAADVQLADMPVSAAGPSWTGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPT GTTVIEVRLASSVDDVLAGDQVRLVSAVGCEGADCTLAENATVMNVGKPDAIGALGGNDR LVSFAMPPEAAAKVMELQQAGAIMAVVR >gi|316915503|gb|ADCN01000035.1| GENE 27 25286 - 25486 239 66 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1786 NR:ns ## KEGG: BLJ_1786 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 66 1 66 66 111 98.0 7e-24 MAEYSATRRTPRKHKRVVMKGTEQFDADGVKLEPGDMQTDQQRQSDDDKRILGELPPHWA VFNERE >gi|316915503|gb|ADCN01000035.1| GENE 28 25489 - 29112 3845 1207 aa, chain - ## HITS:1 COG:TM0618 KEGG:ns NR:ns ## COG: TM0618 COG1112 # Protein_GI_number: 15643384 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Thermotoga maritima # 999 1199 1088 1288 1289 70 28.0 2e-11 MTQSQTQNQNLTEGLNRIRRWRDQYRSMQPPSPLEDVNQLAAKLEMTHAHPSGIAQLFAS GHVRLDSLFRDTGVLKAAERHIGRVLDDQAAKRRISGVAELSLVVGVATWKGNALPVLLY PVSVTIEDDGLSTTIRFTGRVALNVAFVNTLREQGVFLDEDSLFDGASYDSGTPETSAMF ARISSEASERISDFAIERQIVLGCFMDPSSQMISESRQFIDQLENGPTGNVLLDALAGDE SARTALKDANIPQYSPFDVDPHAEYEVGDVDNTVRYAASLAANGHSIVVDGAFPKGTAEQ AVAIASRCLMNGRSVLYVPGVAEQKRLFIQTASANEMKAQVLDVSDEHANAALDKQLIAA VGFQPGVATQRFDQLADELVGVRSRLTRYLGDLHGGNDKWNVSAYETIQNLARISVLPTH PATHVRLDESSALSIANDIDTWIGKMERAGELGEYTIGPEDTAWYKASITTEEQAVTAYQ RVDDLLRRFLPATREQVARTVQTCGFPVPPTTREWERQVTVLKNLRRVLDVFQPEIFERD ISSMIEATKPKSQRKAEGTSMGFWERRRHIKEAKDLLRVGAQVEDLHEALKVVAKQGEQW HQFVPHGGWPVLPSKLDEIISTQEALVSNMTALDTVLSTTPAGGNLETADFEKVEARLKA LLDDRKALDTLPERCLLEQEFASAGLNELVADLNARRVSVEQVRGEVQLAWWTTVFEDIV RSSAIISNQDGAALQAASDRFAQVDVEHVRSIGPMVSQESMRRLCDMLFSRTQEANQMHT VLAGRASVSLSRIRRDHPEILAAAKPILVAAPGTLAALTEPGVLADVAILDACAHIPAIE LLSIIGRVQQVVVIAHCATVTSESVKQLIDTLPHIEVDAAPSRRAPRLSAFLESEGYGPV RYDVATEPAAGEVRFHRVEASGVPVMSSGLVESSQPEIDEVVRLITQRAAGFAVVPSSYR LVVVMLTDAFRTRLGAELKSLAGKSKAMGRFLRHVRLVSLRDVAGGRATDVILSMCYAKT THGRLLQQFGPLESTGGRGLLLDALALADHSLDIVSAFGSEDLDEERLHQSGPRFLKTML TWAEQLDDRPVLPLRDAAGGNVLFDDIADRLRARGLNAAVDYGFDKGVKIPLVVGLKDKP FALAVQTDDANFMSVQSTRRRHRLSAQDLISLGWNVMTVWSVAAFVNPDKEVDRIVSRIG EIYREVE >gi|316915503|gb|ADCN01000035.1| GENE 29 29121 - 30614 832 497 aa, chain - ## HITS:1 COG:no KEGG:BL1551 NR:ns ## KEGG: BL1551 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 497 13 509 509 806 99.0 0 MSEWTVKINGVDRISVKPGECVEIGRKPLRPLADDGNTRLDVADQTKSMSKRHAMFTVKS NGTASVRDLGSTNGSYVVRENGDLLRLPANVEFLLPTSPMRMQFGDVPADFIRVDDPVAK PLDLKVPDLFGYAVHEAPQEPDAADMSVDDILDLRAGEPTAIFSADNVRRKVDELELGSL NITQPVTKNDEPAIPRDLFADALAQHAEQETERKNQQAMNSVALPKRQTEPESTIVTPAS KHSRISGIVPVDAIAHAVVKHAPSTSEPAVASAAVVESDVVAGASKSAENVQSAPNTRNA GDSQPADTVEQHAEVAQPEAAREAEAAQSENTQPETAQPATAQSETDQPAADVPDDQQRT AAEAYQEATAAGVADQQPAAETAQQSVSEAYDIDSTGVHTPVFEPGSVFERVAKGELKAQ EPAVEVDGLTSDEAKTTQDFNVQFEVARHPELLAFLAMNPYLYDDMYSWLAARGEADIDE ALSHNKGYQEYREAVGK >gi|316915503|gb|ADCN01000035.1| GENE 30 30866 - 31246 598 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336425|ref|ZP_00121643.1| COG0222: Ribosomal protein L7/L12 [Bifidobacterium longum DJO10A] # 1 126 1 126 126 234 100 6e-61 MAKYTNDELLEAFGEMTLVELSEFVKAFEEKFDVEAAAPVAAVAAVAGAAAPAEEEKDEF DVILSAVGDKKIQVIKAVRAITNLGLAEAKALVDGAPKAVLEKAKKEDAEKAKAQLEEAG ASVELK >gi|316915503|gb|ADCN01000035.1| GENE 31 31355 - 31876 845 173 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466102|ref|NP_696705.1| 50S ribosomal protein L10 [Bifidobacterium longum NCC2705] # 1 173 1 173 173 330 100 1e-89 MKRPEKEAVVAQLTEEFRNADAVYLTEYRGLTVPQISDLREKLGRDTSYTVAKNTLARIA AKEAGIEGLDEILSGPTAITFVKGDFIEAAKVIRDFAKDNKALVIKGAAADGTVYDAEGA KKLADLKSRPQLLAEFAGDIKASMAKAAYLFNALPTKAVRTIDALREKQEKAA >gi|316915503|gb|ADCN01000035.1| GENE 32 31875 - 32096 93 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291516495|emb|CBK70111.1| ## NR: gi|291516495|emb|CBK70111.1| hypothetical protein [Bifidobacterium longum subsp. longum F8] # 1 73 1 73 73 142 100.0 8e-33 MAFLPKSAVDLEFGTFGRATKKPCAQAEQYNLAKRPSPALDGLISLNLRWLGEPNFGNAL ARTSTNGLWFTDD >gi|316915503|gb|ADCN01000035.1| GENE 33 32145 - 32975 1025 276 aa, chain - ## HITS:1 COG:no KEGG:BL1548 NR:ns ## KEGG: BL1548 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 276 61 336 336 516 100.0 1e-145 MKPAVEVSITSWKKNVVKPGQEYGRVLLMPGTGYNCDRPLLYWSAQALVEAGWRIDRMNV RNASDDLSTVIPVLNQAIDGWVAAARESGAGKAGDSGDGVAADDSATVLADGAAGSPNRD SDTPSGPRLLLIGKSLTTMTYPHVASHYGLPFVLLTPVLHHADFDPSARVIPVPAVGDDI VAESEAPSVAEARAIIRAEQAGQSHAASSRYSGPAPLICAGTADPFYDQARANALTPHVH EYPDANHSIEVPGHWRRSLDYLKEVTASVAQYAATL >gi|316915503|gb|ADCN01000035.1| GENE 34 33230 - 34624 2365 464 aa, chain + ## HITS:1 COG:SP0287 KEGG:ns NR:ns ## COG: SP0287 COG2252 # Protein_GI_number: 15900221 # Func_class: R General function prediction only # Function: Permeases # Organism: Streptococcus pneumoniae TIGR4 # 1 463 19 490 490 449 54.0 1e-126 MEKFFHLKENGTTVSTEILAGLTTFFAMAYIIVVNPQILSQTGMPWGGVFLATIIAAIIG TLVMGLFANVPYAQAAGMGLNAFFTYTVCFGLGFSWQQTMCMVFLCGLINILITVTKIRK MIILAIPESLQHAIGGGIGLFVAYVGMLNVGLIKFTPGDPKAAAKGGAVAATPGLANFND KVLWVFLIGLVLAIVFTVMKVKGGMLLAIAITTVIGIPFGVTTWSNSQSISETFSQLPQT FGAIFSAEGFPALFSDPTKLPLVIVTIFAFSMSDTFDTLGTFIGTGRRTGIFSAEDEKAL ENGHGFSSKMDKALFADSIATSIGAICGTSNTTTYVESSAGIAAGGRTGLTSVVVAICFA LSAFLAPVVSAVPSAATAGVLVIVGCMMAASLKEVKWDDIAEAIPAFFAAVFMAFSYSIS YGIAGGFIMYCIVKTCKGKAKEVHPIIWTVAALFILDFVCMAIL >gi|316915503|gb|ADCN01000035.1| GENE 35 35051 - 37792 4214 913 aa, chain - ## HITS:1 COG:MT2853 KEGG:ns NR:ns ## COG: MT2853 COG1185 # Protein_GI_number: 15842321 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) # Organism: Mycobacterium tuberculosis CDC1551 # 11 734 15 739 752 870 64.0 0 MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV ICEAQDELKKIAAKETKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEI KEHVREVLADEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL QLDTKLDGIPADILAAALQQAKEARATILEVINECIDGPAEMSEFAPRIITTTVPVEKIG EVIGPKGKMINQIQEDTGAEIAIEDDGTVFISSEGGDAAKKAKSIIDSIANPHVPEAGET YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVD DRGKISLAIPGFEDQENNARPSRGDRDDRRGGRGRGDRDDRRGSRGRRSDRDDRDFDDRD DRPRRRRSDDFEDDYDDRPRRRRSDDRDFDRDDRDDDRPRRRRSADRDFDDRDDRDARDS RDDDRPRRRRSSDRDDRGDRDDRRGGSRGRGRGSDRNPRYATDDNYDDYRADREERTERP RRRVRRDFDPFED >gi|316915503|gb|ADCN01000035.1| GENE 36 38068 - 38337 451 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|213693121|ref|YP_002323707.1| ribosomal protein S15 [Bifidobacterium longum subsp. infantis ATCC 15697] # 1 89 1 89 89 178 98 7e-44 MALTADEKTQIINEYATHEGDTGSPEVQVALLSKRIADLTEHLKEHKHDHHSRRGMQLMI GDRRRLLDYLKRVDINRYRSLIERLGLRR >gi|316915503|gb|ADCN01000035.1| GENE 37 38528 - 40687 230 719 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 499 705 16 226 245 93 31 3e-18 MILAAFGHPVTMDELRRRYGAPRGGLSLANIVTVLSDSGIRVRAVTTPSAEALKTVMTPC ILHWDDNHFVVLDHYAYGRFRIADPANGRHAYTPGELAAHCSGAVLIPQPTNDGCATIPI RPRSGTVSILTGFLRRNMPAIGLSLLFSLVVQGLTLIVPAGTGYMVDHGSLAAQSGFPPL VATMLLASLLVYYAVGALNTVMLTRVQVRFGRYLSRRYMTGVLDREFPFFVNRSGGDLIY RANLVMVVEQIVTGSLPSTVVSMVFLVVYLIMMIAYSVPLTMLTLTVCAAVLVVSVIYSL RNRTLVERATVAQADVQRAFIETFSGIETVKSLNLESHCYDRWSARLGAQLDYQTRQGRL SALLSSLSSALVFVLPLCVVAFGMTFVGRGTLALGAVVGFMSLASAFVTPFSGIVGVISQ IMAFATYMRKICEMIPAGEGGGASLECDEPGGEPGDVGLGDGGRSACGGPSGDESGDGIL ERLHATGVGYSYTAFDAPVLSDVDCDIRKGDKIAIVGPTGSGKSTLLKLLAGLIEPVCGT VTINGGGCRIYDADSRWKAGRLAYVHQESTVFNETLRDNITLHRPWLTDDDIVRACEVAG INEGMMDPVVGLDAMVSERGMNLSGGQRQKVAIARAVVGRPDFLLMDEPTSALDNDTERH VMTALLDSDNACIVVAHRLASIRDFDRIHVMDHGQIVESGTHDELLQAGGLYSRLYRQE >gi|316915503|gb|ADCN01000035.1| GENE 38 40762 - 41580 748 272 aa, chain - ## HITS:1 COG:BH3979 KEGG:ns NR:ns ## COG: BH3979 COG1131 # Protein_GI_number: 15616541 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Bacillus halodurans # 17 271 3 250 257 104 30.0 2e-22 MTADHINHADRTDNGEHAIIAVEHVTFGYKKKQTVLEDIDFTVPQGQSLAILGYNGVGKT TLFRLIVGLLRPREGRCVIDRRRVPSMRDVFQMTENGNLVGTMTVRDNIHFRQLLFRSGK GIADGGHTVDSKRLEDEPLVRAFELEGHLDKKVAELSTGLRKRVGIVAGMLFDPHVIMLD EPSNAIDPITRSLLVDYVNQLRADERTLLTVTHDLEYCWNVADRIIILDDKHLVKDMMLA EFDDYEAFTKASTLGRDRTHVDFGLPARGRQA >gi|316915503|gb|ADCN01000035.1| GENE 39 41631 - 44792 1837 1053 aa, chain - ## HITS:1 COG:BH0455 KEGG:ns NR:ns ## COG: BH0455 COG4403 # Protein_GI_number: 15613018 # Func_class: V Defense mechanisms # Function: Lantibiotic modifying enzyme # Organism: Bacillus halodurans # 101 1051 84 1045 1059 224 24.0 6e-58 MNGNVGTTWAASATTLEERCMAATAMPDALRQYRASHAEDMLSATVEWKNRRNPLRDEDY QGIADALGDDASVVETVIADRERKLSGHVEPAWSVELQTILNRYDSEEERVERTGYATAF APFVAYVKAELQAYMSACSLPMNDERLIEQCLSAYVERLLGIGLKTVVWELHVARQAGSL GDGDAKRQLRRYFELLATDEYRGHMYAKYPVLLRFVTQTTVHYIDFVKEMLDRVSMDRDE LASFAGVGDDFRLEDMSIDRGDAHDGGRAVAMLTIGGRKIVYKPRDLHIHELFAGLVRRC ERTKGFLPMRVSDVLTKSGYAYEEFVEHGTCEDARQVERYYTRYGQLLGLVWLLHGDDMH HENIIASGEYPMVVDFETIATNHVTMDMPDGTDADIRVSTILRDSLASSCLLPAKTAMSA DGTSVDISAFETGEQTMPGIVASPVGLDSADAHYERNAVTFSKDGCAVTLDDAVVDPYHY KRQILQGFRNTVAAAMTIDADEWDAMLSGEDTTVRVLVRNTSAYARFADFIHHPSALKDM LDVEAILENLYVYPFRDKRIFASEYRQMLAGDIPMFTAQLTGHDLHAPDGTTIDGVCERS VRERVLDTIGHLDEQAALQSRIIRNALRMEPGMEDAHPTASVSSDTDAEHYPIELGTRIA DTAILQETDGTVSWLTANRSDTMAADKTVDERYEPGAPTSGLYDGMAGTGMFAAELYRRT HDERWRDLCTRMMRSLMRRKDRGITYSGFTSGLSRSYCALRMANAGITSPEARRCMTQTV RMLPAYIDDMLPKLLQRDNPQPSFHLDYLTGAGSSIMLYLRLYDVFHDMRIVEQTSRLGR TVIRAFPETQRNADESDDMPYPTGAAHGLEGMAVAFWKLYAATGNREFAEFARMLWRKSD ARRSGAKQEDAGKWCRGKVGVLWARNELAATAGADGERFFEDENGRAFPDKADITALLGN ADWDDDGVCHGRCGMIDTLISIGNANGDEWYRMQAQRLMDDMIAQARSSGRFRLRQSREF VDLSYFQGPVGVAYTMLRLNDPSTPSILALETR >gi|316915503|gb|ADCN01000035.1| GENE 40 44804 - 45541 463 245 aa, chain - ## HITS:1 COG:SP1951 KEGG:ns NR:ns ## COG: SP1951 COG0655 # Protein_GI_number: 15901775 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Streptococcus pneumoniae TIGR4 # 1 232 1 231 234 90 27.0 2e-18 MTSMVAYVASRNPQSQTLRSVRLIQDAVSANIDAEWTILTPNDTTILPSDGTASEFSTGV DHIELNGLDDSARVKKAIERCDYLILGSPTYGHNVSGDMKILMDRLTYWGHLFHLAGKPG MAMVSATTNGFLEVGELMERFMESLGIIIDETAYHTTFTPFDEAMADQTAAAIVRALNTL RDGVVPETSERQELAFQSYKRDYARRDGSDAESRYWRERGMFDCATFHEYVETRRKLPES VHAER >gi|316915503|gb|ADCN01000035.1| GENE 41 45581 - 46240 469 219 aa, chain - ## HITS:1 COG:no KEGG:BLD_1649 NR:ns ## KEGG: BLD_1649 # Name: lanR1 # Def: lantibiotic response regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 219 1 219 219 343 98.0 2e-93 MKAILFRDCKACFQSFKNWGMVLIIMVTAIFVEMVASGAGILDPFTWAVFFGPFFIYSSC SVMVSILYQDFRDGLFELYIQSGRSYWSYCWCKCLFPVILTVISVLLNLAFMRVLSSGFQ ITAGADDAIGALIVSVLGTIVCSLGAMPMVYVSRNSDPTMAQLVLVLIAVLLQLAYMLVI VNVMPLCLFSVGYVVLVVVAIGISTGVFSRYFINTNIEL >gi|316915503|gb|ADCN01000035.1| GENE 42 46324 - 46524 210 66 aa, chain - ## HITS:1 COG:no KEGG:BLD_1648 NR:ns ## KEGG: BLD_1648 # Name: lanA # Def: lantibiotic prepeptide # Organism: B.longum_DJO10A # Pathway: not_defined # 1 66 1 66 66 93 98.0 3e-18 MSINEKSIVGESFEDLSAADMAMLTGRNDDGVAPASLSFAVSVLSVSFSACSATVVTRLA SCGNCK >gi|316915503|gb|ADCN01000035.1| GENE 43 46637 - 46837 144 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNPCCAMIIDTPRRKGTLMRTPLLILTVLGLTFGASASTPSNSSTEEEISTYSLCPVWFP LCHIRN >gi|316915503|gb|ADCN01000035.1| GENE 44 46834 - 47994 490 386 aa, chain - ## HITS:1 COG:no KEGG:BLD_1647 NR:ns ## KEGG: BLD_1647 # Name: lanK # Def: signal transduction histidine kinase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 386 1 386 386 744 98.0 0 MVRRLAMKTILVVRKKCLGVSKKNLVLSIVAMTCLAACIAEWILDSPESLNDGFIRIVYM LAVSMLPLYPVPATWGIIVIAFLNELMPCLSQCDESWGVLVSLAIQGYAAVWWNGVTATV LLSISALLNYAIYRENSEFGSFDGSINLVVLLWFVFLLGVWLRQRNGLEKKKELEKKAEI VRYNLQLAEGMHDAMSGELTRMLVIVQEGIDASKEEELKRWRKLQNGINRIFQDLHSVMN YLSDDDHKQDDVFHVSLAEHIQATLSESDRRLHDKGFCGHSSLRGVSSAMLNSWNQIIVN LLREIYTNIERYADKSEYSVIVTFSNNAVDIVQVNKCRQKSRRCVTLGARKGLSIYSRLI SGQGGFIRYEKDGEEWSFYCMLPLLT >gi|316915503|gb|ADCN01000035.1| GENE 45 47988 - 48659 154 223 aa, chain - ## HITS:1 COG:DR0432 KEGG:ns NR:ns ## COG: DR0432 COG2197 # Protein_GI_number: 15805459 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Deinococcus radiodurans # 7 219 2 207 214 69 26.0 4e-12 MGNPNEIRLAIVDNDDFVLMGLAAFLSRHLPNVRLAWKANTGTDALEYATDPANEADILL VDMSLEDMPGDMVCREIRSRNRMLPLLAVTSFSLTRYARRAAEGGAQGIVSKADFPALCK AVKLVSDGHTLCVRVGGETIGFEDVDAAYHRLVRLPVNRIERLSEREKYAMELYSQSYKP TQIARMMDVSAGTVKTYLDRVQNKLHLTSRAELIAYWWRRERW >gi|316915503|gb|ADCN01000035.1| GENE 46 48777 - 49817 169 346 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 167 339 142 312 317 69 34 4e-11 MGEVYSHLSEEERRVIRIEIGNGTIICGIVLMLGRNASTVGREIKRDTWFPSNENESYRP YRPKRLKTGPWTGRYYIAGPAQRKAGRRRAEPRRRHRLSCERLWARVAEWLGRGWSLLPV SGRLRVLFPDDSAMRVCPETVCRWIHADRRRRERWARRLPRGHGRRRRRGGGRTSRFPIP GRVPISERPPEAGDRSGFGHWEADGVIGAGCNLHTEVERKTRFLMAGIVPGKTAGESVGA QLAMFSPLPAGARGGVTHDNGTEFAHHERLRDGLGMDTCFADPYSSRRRGSNENRNGMIR RYLPKRSEIRMDMAGELREIVDEADNRPMRVLDYRTPAEAFADELL >gi|316915503|gb|ADCN01000035.1| GENE 47 49931 - 50617 694 228 aa, chain - ## HITS:1 COG:no KEGG:BLD_1641 NR:ns ## KEGG: BLD_1641 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 228 1 228 228 380 99.0 1e-104 MEQEPNEQEPNEATEIVGGKVETVEVSRHPEASIPETDLSLADIERRRSHPLRWALIILA VLCAIIAPYWFGRSLAVNNTDSIVAVLGGVSPQGIALVGWVAVVITYVGLAMAVVVSPSW PWLIVFVLGLACEQFIAGLSMLNLNFWYSTYVVYGKQAGLANAANLGIMGAAIGIAVYAL VFVGLLVIIRKTSPLNVLTKSWASFILYFVIETIALLVVLFGGLLTTV >gi|316915503|gb|ADCN01000035.1| GENE 48 50757 - 50924 91 55 aa, chain - ## HITS:1 COG:no KEGG:BLD_1640 NR:ns ## KEGG: BLD_1640 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 55 1 55 57 67 98.0 1e-10 MLISQQVRRIDELERQVDMLEALLHGRRRKEQAANTLPEEQTDTAADKSPDADGQ >gi|316915503|gb|ADCN01000035.1| GENE 49 50918 - 51430 253 170 aa, chain - ## HITS:1 COG:no KEGG:BLD_1639 NR:ns ## KEGG: BLD_1639 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 170 3 172 172 300 100.0 1e-80 MTSGGGTFSPEEIKYLKSLSAVAEATAKRITYTDDFKRYCVVHYNEGASPVRMFREAGLD PALIGYKRIERCLARWRESQDEILNSGNAKAGVENKLGGGLQIRSFSAREPRAHQTFRRV REQRELGATRRNRHFRLVPAANPISTYRPNVAPSSSPSPAKSRTMTYATC >gi|316915503|gb|ADCN01000035.1| GENE 50 51563 - 51772 73 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNVWHFDLNVMGPGIENNLCFTTTNVSRRLGNNRQANTIVGEVKDGPVYPIRGPIIVQL PSSHYSGST >gi|316915503|gb|ADCN01000035.1| GENE 51 51892 - 53136 1695 414 aa, chain - ## HITS:1 COG:no KEGG:BLD_1638 NR:ns ## KEGG: BLD_1638 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 414 1 414 414 601 99.0 1e-170 MKLRKLFAGAAAAATLLGGMAFGATTANAAEANISSTTITVNATDANQFYTKPVDTADLQ ANLRMFKYVELAKYVSDGNTGVELEGLVSGEAVDAAFAAAGYNDQTKGDSLNEWAWLGNT TLTAAQTTAFVNALKDLAVTDITPTASNGGKTQTFTFAEGGLYLIVDQSGKLVVEDNDTH KLVWNGNAPILAGTAITGAAPSVNNATGVLAAAGVVDLKSSKEETTKAGAVTWQKVDKNA AALTGAEFQVYEGDVSGLSADELKAKTPLKFNGSNGAYSLPTANADGTYPEGATDTLQSN AEGKYTLNGLKLNTTYTVIETKVPTGYNGTFVGKFTITTGATADAAATFAGKDAWNLSKD NKGTFQVTNVKNITQLPLTGAAGTMLFSVIGLLIAGAAVTVFVKSRSTKRALNA >gi|316915503|gb|ADCN01000035.1| GENE 52 53333 - 55774 2317 813 aa, chain - ## HITS:1 COG:no KEGG:BL1539 NR:ns ## KEGG: BL1539 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 23 813 1 794 794 1218 97.0 0 MKRIAEWFAAVGAAAGRSGKRLVAVVAAVAMLGGVAGVSATAMADDGNASTTQSQTTDEK AAASAPAPLSTEGTNGVPDDPTLSAPAREKTVTANGDGTYKVALNVTGAKSAGTGAIVTN QPLDIVLVLDVSGSMADNLSGGPKKIDALKTAVNGFIDATADENAKITDQSQRNRIALVK FAGTEKTSVGNDFYREGWSSYNYTQIVSNLTYDVSGLTSTVNGLSASGATSADYAFNRAQ AALTYQPRANAKKVVIFFTDGEPNHGSGFDPTVAATAVNKAKSLKDAGTTIYSIGVVSGA NPGDTSSNLNKYMHGISSNYPDATATSSEHLWGKSWNANLGDRAETSSYYKAATDAGQLN NIFESIYQEITKTAEYADVTIHDRLSSWVVSSDSASENGEPAGFTYTKTRKGQTTAWADA PEATVAADGTVSWPVTSNDDTLEDGVTYTVSFNVKPTQAAFDEAVKNHKDDANASGDNNF YTNDNSSATVDYKTVVTSSQGGTTTSDPQTAAYPQKPTITLPVSKITVTKTWSDDNENHA NDSVQVQLKQDGEDYANGSATLNAAGNWTHEFTVPAGPEGHTYSVSEVKVEGYDSKVDKT DLKLQGLTAQSGAFTVTNTPSYVTLPASDVKVTKVVQGHAANSDFGFNLKCVDSTDANAG KCADVTGLANNGLTTTVSKDELTASGASATVGFGNGDLKFRVPTGADNLVYTFEASEDTE KPAAGWKYDNDKVTVKVTVSRTDAVVSYEYGENDSDRTNTESAQFTNKYVAISSLPLTGG TTGRDWMVFGGGLGLLALLAAAGYTVWRKRQLV >gi|316915503|gb|ADCN01000035.1| GENE 53 55918 - 56133 66 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSGTLVIHPAITHFSFSTGHAGPTIWELRRICRRCAGAGVTDDRQYATAPHVCSITYRY AYTETYYMQFL >gi|316915503|gb|ADCN01000035.1| GENE 54 56481 - 58532 2680 683 aa, chain - ## HITS:1 COG:DR0933 KEGG:ns NR:ns ## COG: DR0933 COG0366 # Protein_GI_number: 15805957 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Deinococcus radiodurans # 87 651 20 595 644 402 40.0 1e-111 MAQSNQSAQAVESVEKTEVAKKAAKTASTRAAKTATTSTATKTTATKRTTSRTARTTATK ATTAVRSARTSKAAATKSATAKRPASSAVFNARLAAHQDELEQLFMSLYNDHDAFDALVA SMAAAYADRPADLKRLDKTREQDPGWYKRGDMFGMTMYTDLFAGDLKKLADKIPYLKEQK LTYLHLMPLLDMPHPNNDGGYAVQDFDTVDPKLGTNEDLAALAKKLRRAGISLCIDFVMN HTASTHRWAKAAEAGDPEYQDYYFCYPDRTIPDRYDRDVPQVFPNTAPGNFTWNEKMNKW VMTQFYPFQWDLNYRNPKVLVAMMGSVMRLANLGVEVFRIDAVPYIWKQLGTNCRNLPQV HTIVRMLRIILECVCPAVVLKGEVVMAPKELAAYFGTPEAPECHMLYNVSIMVNLWSALA SRDVRLLKNQIDKLNSLPENCWFVNYLRCHDDIGWGLDEDVERYLDIDPLKHKEFLYHFY EGATPGSWSMGELYNYDEATRDARSCGTTASLCGIEKAIITHDKPLLETSVDRDLMMHHA MSFLRGFPMLNCGDEIAQLNGWDYKEDPDRVEDSRNLHRSKFDWTKAALRKKSGTLQNQL WKGMEDLRAMRNDPCFAPDAWVSTWDTFNDSVLAVIRQHEGKTLVGLFNFSPDPQHAHLN ACNGILNAMDADLQPYESQLIHL >gi|316915503|gb|ADCN01000035.1| GENE 55 58645 - 59193 362 182 aa, chain - ## HITS:1 COG:Cgl2440 KEGG:ns NR:ns ## COG: Cgl2440 COG0736 # Protein_GI_number: 19553690 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Corynebacterium glutamicum # 6 139 4 127 135 69 35.0 4e-12 MNTCGLGHDVVDVAAFAEQLAEPGSRMRALFSVREVRQASDRARQKNDGEAVHLAAKWAG KEAFLKAWCDYLGDAPYPFTLDNFPWPEIEILDDSRGVPHVSLGKGAASVFQTDYANSAA GARYSSAYSSASDNGPYAVMQERRNARSAQRSAFGAGSMPHIHISLSHDGPIASAVVTIS VE >gi|316915503|gb|ADCN01000035.1| GENE 56 59114 - 59332 169 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRDPGSANCSANAATSTTSCPKPQVFMLPIVYRFARNLYTSSELGPDFHFRGKRFTMLDD LAQYRKHLGLAA >gi|316915503|gb|ADCN01000035.1| GENE 57 59316 - 59522 146 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGWLPSRPKKHPRPAPKVYLRFEGRILTVPEVYFRFKGLVILHTTSIRSITPTPFRRFYA LSTWVTAP >gi|316915503|gb|ADCN01000035.1| GENE 58 59648 - 60092 239 148 aa, chain + ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 148 1 148 171 184 70.0 9e-46 MSRKRRGSYDVEYMRIVVGLIRDGIGAKSLARRLGVSKETTREWLLSYRIGGEAALMGER EGNRKYDYETKLAAVLDHLERGMSRPEVMERYGIASRTCLKQWCQDYRRGGPEALRPKPK GRPKGAKSKPKPAPTREQLLEEENAYLK Prediction of potential genes in microbial genomes Time: Fri May 13 13:17:55 2011 Seq name: gi|316915459|gb|ADCN01000036.1| Bifidobacterium sp. 12_1_47BFAA cont1.36, whole genome shotgun sequence Length of sequence - 53792 bp Number of predicted genes - 47, with homology - 44 Number of transcription units - 25, operones - 10 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 17 - 499 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 2 Tu 1 . + CDS 606 - 1568 1600 ## COG0039 Malate/lactate dehydrogenases + Term 1686 - 1720 5.3 - Term 1599 - 1630 0.9 3 3 Tu 1 . - CDS 1710 - 2648 837 ## COG1230 Co/Zn/Cd efflux system component - Term 2710 - 2740 3.3 4 4 Tu 1 . - CDS 2814 - 3539 685 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 3559 - 3618 3.0 + Prom 3591 - 3650 3.1 5 5 Op 1 . + CDS 3792 - 4040 142 ## BL1311 hypothetical protein 6 5 Op 2 . + CDS 4057 - 4533 302 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains + Term 4616 - 4650 7.6 - Term 4587 - 4649 8.2 7 6 Op 1 . - CDS 4666 - 5865 1385 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 8 6 Op 2 . - CDS 5876 - 8155 2271 ## COG3973 Superfamily I DNA and RNA helicases - Prom 8199 - 8258 2.3 9 7 Op 1 29/0.000 + CDS 8488 - 9009 652 ## COG2001 Uncharacterized protein conserved in bacteria 10 7 Op 2 . + CDS 9009 - 10088 843 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 11 7 Op 3 . + CDS 10095 - 10544 404 ## Blon_0849 hypothetical protein 12 7 Op 4 . + CDS 10541 - 12343 1992 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 13 7 Op 5 . + CDS 12370 - 13242 725 ## BLJ_1300 hypothetical protein 14 7 Op 6 28/0.000 + CDS 13291 - 14742 1288 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 15 7 Op 7 28/0.000 + CDS 14787 - 15893 1352 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 15900 - 15939 -0.1 16 7 Op 8 25/0.000 + CDS 15948 - 17393 1569 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 17 7 Op 9 31/0.000 + CDS 17380 - 18597 1096 ## COG0772 Bacterial cell division membrane protein 18 7 Op 10 26/0.000 + CDS 18613 - 19794 1112 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase + Prom 19809 - 19868 1.7 19 7 Op 11 . + CDS 19895 - 21433 1666 ## COG0773 UDP-N-acetylmuramate-alanine ligase 20 8 Tu 1 . + CDS 21568 - 22497 742 ## BLD_0183 cell division septal protein 21 9 Tu 1 . - CDS 22879 - 22986 64 ## + Prom 23064 - 23123 3.8 22 10 Tu 1 . + CDS 23238 - 24341 400 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 + Term 24370 - 24400 -1.0 23 11 Op 1 . + CDS 24485 - 25171 202 ## Ccel_0193 hypothetical protein + Term 25194 - 25255 2.9 24 11 Op 2 . + CDS 25261 - 25749 659 ## COG1490 D-Tyr-tRNAtyr deacylase 25 12 Op 1 1/0.000 + CDS 25910 - 29029 3559 ## COG0383 Alpha-mannosidase + Term 29044 - 29088 11.4 26 12 Op 2 . + CDS 29151 - 32303 2835 ## COG0383 Alpha-mannosidase + Term 32308 - 32339 0.2 + Prom 32440 - 32499 4.8 27 13 Op 1 35/0.000 + CDS 32691 - 33983 2034 ## COG1653 ABC-type sugar transport system, periplasmic component 28 13 Op 2 38/0.000 + CDS 33980 - 34951 991 ## COG1175 ABC-type sugar transport systems, permease components 29 13 Op 3 . + CDS 34951 - 35790 1148 ## COG0395 ABC-type sugar transport system, permease component 30 13 Op 4 . + CDS 35818 - 37098 1377 ## BLJ_1281 hypothetical protein + Term 37104 - 37160 11.1 - Term 36979 - 37041 13.7 31 14 Tu 1 . - CDS 37123 - 37293 88 ## gi|227547566|ref|ZP_03977615.1| hypothetical protein HMPREF0175_1990 32 15 Tu 1 . + CDS 37259 - 39538 1743 ## COG1472 Beta-glucosidase-related glycosidases 33 16 Op 1 . + CDS 39866 - 42538 2873 ## COG4724 Endo-beta-N-acetylglucosaminidase D 34 16 Op 2 . + CDS 42546 - 43187 755 ## BLJ_1279 endo-beta-N-acetylglucosaminidase family protein + Term 43189 - 43242 3.4 + Prom 43221 - 43280 4.1 35 17 Tu 1 . + CDS 43402 - 44511 772 ## COG1609 Transcriptional regulators 36 18 Op 1 . - CDS 44623 - 45858 1817 ## COG2942 N-acyl-D-glucosamine 2-epimerase 37 18 Op 2 . - CDS 45925 - 47223 1355 ## COG3538 Uncharacterized conserved protein - Prom 47321 - 47380 3.5 - Term 47335 - 47380 10.3 38 19 Op 1 . - CDS 47435 - 47527 80 ## 39 19 Op 2 . - CDS 47499 - 47801 376 ## COG0738 Fucose permease 40 19 Op 3 . - CDS 47868 - 47978 255 ## BLD_0203 fucose permease 41 20 Tu 1 . - CDS 48086 - 48475 737 ## BLD_0204 lactoylglutathione lyase - Term 48484 - 48530 11.4 42 21 Op 1 . - CDS 48552 - 49448 1492 ## COG0524 Sugar kinases, ribokinase family 43 21 Op 2 . - CDS 49521 - 50735 344 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase - Prom 50800 - 50859 3.8 44 22 Tu 1 . + CDS 50671 - 50805 88 ## + Term 50845 - 50884 0.8 + Prom 50843 - 50902 2.8 45 23 Tu 1 . + CDS 50962 - 51876 332 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Term 51928 - 51961 3.4 46 24 Tu 1 . - CDS 52016 - 53245 968 ## COG1940 Transcriptional regulator/sugar kinase + Prom 53202 - 53261 2.2 47 25 Tu 1 . + CDS 53372 - 53792 338 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915459|gb|ADCN01000036.1| GENE 1 17 - 499 209 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 141 176 312 317 85 40 8e-16 GHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTH DNGTEFAHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVR EIVDEINNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK >gi|316915459|gb|ADCN01000036.1| GENE 2 606 - 1568 1600 320 aa, chain + ## HITS:1 COG:CAC0267 KEGG:ns NR:ns ## COG: CAC0267 COG0039 # Protein_GI_number: 15893559 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Clostridium acetobutylicum # 7 314 3 308 313 266 43.0 5e-71 MAETTVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY PTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAI YMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGE HGDSEVPLWESATIGGVPMCDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYA IGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINTPVSDKE LAALKRSAETLKETAAQFGF >gi|316915459|gb|ADCN01000036.1| GENE 3 1710 - 2648 837 312 aa, chain - ## HITS:1 COG:XF0866 KEGG:ns NR:ns ## COG: XF0866 COG1230 # Protein_GI_number: 15837468 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Xylella fastidiosa 9a5c # 1 300 22 309 321 166 41.0 7e-41 MAHTHAPAPSTSINPAAHQRRLIATLTVTGSVFLIEVVSAVLTGSLALLVDAGHMLTDMS VLAASTITAILMRRKPSNTRTWGWARLEVLTAAAGAVVLLVVGIYALMEAGMRLFGGSKA EIDDIGLLLFVGILGLAANIISIFILASQREDNMNMKAAFLEVMNDALGSVAVVASALVM ISTGWNGFDAVAGAVIALMMIPRAIKLLHNAVKVLLEETPDGLDLDKVREHLEDVPHVLA VHDLHASTVSTGMPILMAHVVVDKDLTMEDAATILTQLQDCLREHFPVSVPHTTFQLEPE GYSSPSSNELHE >gi|316915459|gb|ADCN01000036.1| GENE 4 2814 - 3539 685 241 aa, chain - ## HITS:1 COG:MT2793 KEGG:ns NR:ns ## COG: MT2793 COG1974 # Protein_GI_number: 15842258 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Mycobacterium tuberculosis CDC1551 # 14 241 5 217 217 225 54.0 4e-59 MSTIPFSPKQKPDESTLTDRQRKVLDAIRTHIDEQGFAPSFREIGNTAGLKSPSSVKHQL QVLEDKGFIRMNANKGRAIEVVAGSAPNAEKPSQASEEATSTSNVAEIYQFPAEAIAESH DVPLVGRIAAGVPITAEQHVDDVMRLPERLTGSGTLFMLEVHGDSMVDAAICDGDYVVVR EQNSAVNGDIVAALLDDEATVKTFRKENGHVWLMPHNPAYSPIDGTHATIMGKVVTVLRK L >gi|316915459|gb|ADCN01000036.1| GENE 5 3792 - 4040 142 82 aa, chain + ## HITS:1 COG:no KEGG:BL1311 NR:ns ## KEGG: BL1311 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 82 35 116 116 149 100.0 3e-35 MVALALAWCGFGALTAQRAQSDTGATQVTSYIVRPGDTLWSYASAITPAGHDVSETVDEL IALNNLESGSLQAGQRIIVPVE >gi|316915459|gb|ADCN01000036.1| GENE 6 4057 - 4533 302 158 aa, chain + ## HITS:1 COG:MT2791 KEGG:ns NR:ns ## COG: MT2791 COG1327 # Protein_GI_number: 15842256 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Mycobacterium tuberculosis CDC1551 # 13 157 1 145 154 181 61.0 4e-46 MVFPPVHVILGSMHCPFCQNPDTKVIDTRISDDGHSIRRRRVCPKCSKRFTTVETSMLLV TKRSGGVEPFSRDKVISGVRKACQGRPVREEDLKLLGQKVEEDLRSRGLAEVTSDEVGKA ILKPLRDLDVVAYLRFASVYQNFAGLEDFQSAIDGLRE >gi|316915459|gb|ADCN01000036.1| GENE 7 4666 - 5865 1385 399 aa, chain - ## HITS:1 COG:VC2481 KEGG:ns NR:ns ## COG: VC2481 COG0111 # Protein_GI_number: 15642477 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Vibrio cholerae # 3 398 12 408 409 389 51.0 1e-108 MPKALLLENIHPDAAKSLRDHGFEVETMKGALSEDELIDALDGVDLVGVRSKTNVTARVL DARPTLSAIGCFCIGTNQVDLAHAGKRGIAVFNAPYSNTRSVVELVICDIICLMRRIPAH THHIKHGLWDKSASGSHEVRGKTLGIIGYGNIGSQLSVLAEALGMRVVFYDIEEKLALGN AHRCDTLNELLEQSDAVTLHVDGRKSNTGFFGEDQFAHMKQDAIFINLSRGFVADLGALK QHLDSGHLSGAAVDVFPVEPKKSGDPFETSLANEDNMILTPHIGGSTLEAQESIGHFVSQ RLEDYWFKGSTSLSVNLPQINLGECKGVCRIAHLHDNLPGVLAHVNHVLGEENINVSFQS LATEGELGYVVTDVAQTPSAATLEALRNIEGTIRMRVIS >gi|316915459|gb|ADCN01000036.1| GENE 8 5876 - 8155 2271 759 aa, chain - ## HITS:1 COG:Cgl1339 KEGG:ns NR:ns ## COG: Cgl1339 COG3973 # Protein_GI_number: 19552589 # Func_class: R General function prediction only # Function: Superfamily I DNA and RNA helicases # Organism: Corynebacterium glutamicum # 2 748 15 753 755 341 33.0 4e-93 MSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLDTVRAAGSHGSPTQRSERDSFATMYEN RLTQLRSVEDRLVFGRLDAKNGDRHYIGRIGLSSPDHEPILTDWRAEAARPFYEATPSNH GDIVMRRHITLSFREVVGVEDEVLDVHSDQVGQASSAGTLTGEGALLASLSSRRTGKMTD IVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLLYTHRRTLERSGVLVVGP SSAFLHYIDQVLPSLGETGVVSRTISDLIPGITATAVDSPYAAKLKGDRRMTSVVANAIA ARVRVPAALPTVTISGIQVPMLATDIEQAQADAKRTRQPHNKARETFIRSMLTSMQNRYA EQLDYTPDQAELNRAMSLLRMNEQVRKTLNLCWLPMTAPWLIDQLFAHPERLKSLAGWLT DNDIAALARPKGSPLTRSDIPLLDEAMDMLGPDPKAVARQSAADARRAAEEQYAKDTLAA TGLGGGIVSSQMLLDQMNGDDAELTAQRAAADREWTYGHIVVDEAQELTAMDWRMLIRRC PSRSFTIVGDVAQTSALGGTRRWSKSMNRLFGESHWDLNELTINYRNPQEVSELASRFAE EEGLYISTVNAVRTIPDSVSRNVVPDMSSLLETTAEQAAQLAEQFVSADGTGRIAVICPD NLIAPVRDAVRRKLAVILDPAEYARLIEQPEWDEQISVCGTETVKGLEFDAVVVVEPGLI EDDAPSRLVAASDLYVAMTRPTQKLVIVRTKADEKSPNI >gi|316915459|gb|ADCN01000036.1| GENE 9 8488 - 9009 652 173 aa, chain + ## HITS:1 COG:BH2576 KEGG:ns NR:ns ## COG: BH2576 COG2001 # Protein_GI_number: 15615139 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 30 168 1 139 143 135 41.0 3e-32 MVADQTIRDADANAQGSTTMADLMVGLPPLLLGTYTPKIDAKGRMALPAKFRSQLGQGLV MARGQERCVYLLPFDEFRRIASQIQRVSVGNKAAREYLRVFLSGAVDQQPDKQGRVLVPQ MLRDYANLGSDVVVIGVGTRAELWNKDTWESYLAEKEEGYSDIADDVLPEVEF >gi|316915459|gb|ADCN01000036.1| GENE 10 9009 - 10088 843 359 aa, chain + ## HITS:1 COG:ML0906 KEGG:ns NR:ns ## COG: ML0906 COG0275 # Protein_GI_number: 15827426 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Mycobacterium leprae # 8 314 42 355 372 262 50.0 7e-70 MVDVANIHLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRD SEALGLATERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD RGFSYSHDAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRD KEPFTTTAQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHV GGRLVVESYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAVKADEHEIA ANPRSASVRLRAVEVSREIPSRWRKRFTQTAQGLNDVKIQGSASPGRAKNTARIRTRRG >gi|316915459|gb|ADCN01000036.1| GENE 11 10095 - 10544 404 149 aa, chain + ## HITS:1 COG:no KEGG:Blon_0849 NR:ns ## KEGG: Blon_0849 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 149 1 149 149 264 97.0 7e-70 MATARSIRSNAAPASNRPHTKHQSSSRPELRVVSNPRGNEQGNVVGRVIEWTRTRSAPLV HVAIAVIFLVGTLFGALMLRTQMVQNSFEAAQIETNINRLTQDIEDDQAKLDQLVANLPD KASDMGMVPQQGSVSIDLSGYQSNKGGTQ >gi|316915459|gb|ADCN01000036.1| GENE 12 10541 - 12343 1992 600 aa, chain + ## HITS:1 COG:Cgl2114 KEGG:ns NR:ns ## COG: Cgl2114 COG0768 # Protein_GI_number: 19553364 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Corynebacterium glutamicum # 26 590 23 641 651 242 29.0 1e-63 MNTIRRIVEFAKVKTFAFKCIAIGAALALVASACVIQLASTQLIGGRQTAQAATANRTLT VTLSAKRGRILDANGSVLAQSVERYTIVANPEAAQEFEPITCNDNTRDYCHEIDGKPVGA TGAAAVGRLLAKVLDMNAMELGADLSGTGQYVILKKDVTPQVKRSIEALHLGGIVWGELS SERLYADGDLMGALLGGVNDNGDGVAGIEQVENKTLTGTDGHETYQRGNGGEEIPGTMTE SVAAKNGDDVTLTIDRDVQWYVKKVLKEAESKYGAAWAIAVVQDVQSGEILALADSDEVQ AGTDAAKMSPSRAVSETFEPGSVGKVISMSGYLQMGLHKMSDQLSVPDHITQEGQTYKDS FDHGTERWTLAGILQNSSNVGMIMAGENYPDEQRYEYLTKFGIGQPTGLNLPGESSGLLT NPSAWDLRTRNTILFGQGYTVNALQLNNVVATIANKGVKQQQSIIKSTTDANGKTTETKK GEATRVVDEKVASDMMNAMESVAEGYNKFVKVDGYRMAAKSGTAEVQGSDGTLSSIISDY SVVIPADNPRYAVTVVMKDPNGVFGGLTAGPVSAQICEFLMQKYEVPVSSPRKNAIPVTW >gi|316915459|gb|ADCN01000036.1| GENE 13 12370 - 13242 725 290 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1300 NR:ns ## KEGG: BLJ_1300 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 290 1 290 290 505 99.0 1e-142 MSAVSESIAQRVTLGMLVERYGFEVDPPFATNVTITSLSDAVDTVIPGSLFICTHEQEPD VLHAAQAGAYAALLPRASKGQIANADIPLLYGDFDDRVLGDLASGLAGGPSNAMAVFAVT GADEQAVDAGVSQLSEFLHMLGNPVAVITASGSTSMTRTMNLNYPLGILDMQRALSVCAE DGVAAVIIAMDDRTLAEHALESVNVDVLGTEDVNASASLNELKTRYAFVAEHDMSMTSST PESDEMAADSPAMYDRVRLGHMSLAIAMVLAAGVRKNNIRSALHVANNLN >gi|316915459|gb|ADCN01000036.1| GENE 14 13291 - 14742 1288 483 aa, chain + ## HITS:1 COG:Cgl2112 KEGG:ns NR:ns ## COG: Cgl2112 COG0770 # Protein_GI_number: 19553362 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Corynebacterium glutamicum # 1 478 1 487 514 261 40.0 2e-69 MVPMSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKT AGQGATVAIVDHEVKSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGK TTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARLT RIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMAGLA NGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNALAA ATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSMKAGLN GLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQDQHLD ALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSALAERW AKN >gi|316915459|gb|ADCN01000036.1| GENE 15 14787 - 15893 1352 368 aa, chain + ## HITS:1 COG:ML0911 KEGG:ns NR:ns ## COG: ML0911 COG0472 # Protein_GI_number: 15827431 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Mycobacterium leprae # 15 364 15 358 359 277 45.0 2e-74 MIALIIGMLVSLIVTLVGTPLLIRLVHKLHYGQYIRQDGPQSHLVKRGTPTLGGVVINFA ILLGWASSALYRYLRSGDVPSWSAALVLFAMLSMGLLGFIDDFAKVRKKQNEGLSVGGKF IGQFIFATIYAVLALLIPTKSGFPSAQAGISFIEQPFFNFDFAGRAVAIILFVIWVNFLM TAWTNAVNLTDGLDGLAAGSSMIAFTGFGVIAFWESYHIKGGSHGGYSYAVSDPLDLTVI AVCAAVACFGFLWYNSNPASIFMGDTGSLALGGLFAALSIATHTEFLAVVLGGLYVMEAM SDVIQVGYFKMTHKRVFKMAPIHHHFELKGWTETKVVVRFWMIELIFVLLALTIFYGDWV TRSGLLFS >gi|316915459|gb|ADCN01000036.1| GENE 16 15948 - 17393 1569 481 aa, chain + ## HITS:1 COG:Cgl2110 KEGG:ns NR:ns ## COG: Cgl2110 COG0771 # Protein_GI_number: 19553360 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Corynebacterium glutamicum # 2 468 9 457 472 198 35.0 2e-50 MQVADKTVVIAGLGVSGTSLAEVLRERGAHVIGVDERKPEADLHSFDDVDWDHVDYVMSS PVFNPRTPFVLEAQRRGIPVMSEVEFAWQLRVNNERTGTPAPWIGITGTNGKTSTTEMTS EMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHDVLCVELSSFQLHFTDSLALDCAAIT NIADDHLDWHGGRENYAADKSKVFHNAKRAIVYNAQDAKVSELAAAAQTAEGCRKVGFTL EAPQAGQIGIEDGWIVDRSGVAGGAVGESVRLAAITDFTHLAEPDGSLYPHLVADALTAL ALVLGLGADRDTALKALTSFKPGGHRIETVAEAAVEGGSVRFVDDSKATNGHAARASLSS FPAKSVIWIAGGLAKGSRFEDLVKDQAHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIID PEDNDTVMDRAVEACGTYAAAGDIVLMAPACASMDQFKSYADRGNRFAAAAKTWSEVHGL H >gi|316915459|gb|ADCN01000036.1| GENE 17 17380 - 18597 1096 405 aa, chain + ## HITS:1 COG:ML0913 KEGG:ns NR:ns ## COG: ML0913 COG0772 # Protein_GI_number: 15827433 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium leprae # 34 397 67 428 534 176 34.0 6e-44 MASTDTHKRKAYRAPDKPSLEIADYTGWRSLLNPLWCYHGFRMAVVGLTCFGLIMVFSSS TVTMAALGKSPFLQLLNQGAFCLIGLVLGFVALMMPVTFWKRTGVFFVVGACLLQALTFT PLGHDVYGNRGWLDLGFTTIQPAEFMKFAMCIWLPSSLHACSKMYHKKGIKAYAAPLALY AIGVALVMGGRDLGTAMILVFIGGVAFLIVGFPGKWMGVGVLGAVVMVGALAVSSPNRLR RILATYGDCSAADAQSVCYQSIHAKYAIASGGFLGLGIGNSREKWNYLPAAHNDFIFAII GEETGFVGCAIVLLFFAILAWCMIVIALQVTDRYVAMVLMCVAIWIVGQAMVNIGVVVGV FPVLGVPMPFVSAGGSSMVMCLTAAGLVVGLMRSQPQIKQSRQSA >gi|316915459|gb|ADCN01000036.1| GENE 18 18613 - 19794 1112 393 aa, chain + ## HITS:1 COG:ML0914 KEGG:ns NR:ns ## COG: ML0914 COG0707 # Protein_GI_number: 15827434 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Mycobacterium leprae # 8 393 31 395 407 247 44.0 3e-65 MNQGTPHIVLAGGGTAGHVNPLLAVAGAIRDIEPTAQVTVIGTAVGLEKDLVPEAGYELD TIEKVPFPRRPNLYMLRFPAKWKRETAKVRSILETRHADVVAGFGGYASAPVYATAHKMG IPIAIHEQNARAGMANKLGARWADFIGTVYEGTGLKPRAGADVERVGLPLRPAIASLTKR IGDDRAAVRRESAAQLGVDPNRPLVLVTGGSLGAQSLNRAIASSAADLLAHAQIIHLTGR GKISEVRELVTASAGADVLTGIGPESAGQGDYHTAEYLERIDLAFACADLVICRAGAGSV SELAALGLPAIYVPLPIGNGEQRFNAEPVVNAGGGLLVADKDLTPQWVHEHVPDLLADHE RLAEFGRKAWEYGIRNAAEIMARHVLQLAEPSK >gi|316915459|gb|ADCN01000036.1| GENE 19 19895 - 21433 1666 512 aa, chain + ## HITS:1 COG:CAC3225 KEGG:ns NR:ns ## COG: CAC3225 COG0773 # Protein_GI_number: 15896472 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Clostridium acetobutylicum # 29 502 14 457 458 249 33.0 8e-66 MSQDQPIVLDPTYASFDAAARPADLGATHFIGIGGAGMSVLAEMLHAEGVAVDGSDRAHS AKTDRLETLGITVEFGQRAENVAQAETVVYSSAIKPDNPEIVAAHAAGKRIVHRSDILAL LMNGKRAVTVAGAHGKTTTSSMLSHILVNAGADPSYAIGGFIQGPDGTTLDGGHAGKGDI LVAEADESDGSFAKYHPTIAIITNCEADHLDHYGDEAHYRAAFVAHAGRATGHVIISIDD PDGLAVLEAMPADVKSHTVAYGTTARESLPDLGGAAYVWIASESETAGSGVEQLTLHLPA AVTAGEPVSQSVALKVPGVHNARNAAAAISAAVLLGVSPADAANAAGTFLGAARRFQVRG TVKQVTVVDDYAHHPTEIAALLDAARRRYPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKA DDVIITGIFPAREKQADFPDISPSTIVDAAAGLKDASAGTWIQPVEDMCLAAKMMAMRAH HGDVIFTVGAGDITDMDQVLLTALEAHRESCE >gi|316915459|gb|ADCN01000036.1| GENE 20 21568 - 22497 742 309 aa, chain + ## HITS:1 COG:no KEGG:BLD_0183 NR:ns ## KEGG: BLD_0183 # Name: ftsQ # Def: cell division septal protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 309 46 354 354 525 99.0 1e-148 MSSGHEIDKPEIIDDVTVAKGQAGAFVDARRLHSEDYVAETLHQTTGSLGVASRPKVVNF TERAKERKRANVRVVALRVLIAVVSVAVVTGLTWLLLFSSVFRLETSEIGVSGANEWVSA QTIHVIADKQAGKSLFLVSAHEVTEQLKSIPGVSEAKVSKQFPKSMSVEVKAQRPAAMLK RGDTLTAVDSQARVLNSVKNANVDGIPVIEVKDIDASLKNRSVKEALTILGALPESMRKS ITKVTAETQDSVTTTLNDGDRVIIWGDSSQLKLKLAEVEEIDKNITAGTAGFAGKHQIDV SSSQKPIIK >gi|316915459|gb|ADCN01000036.1| GENE 21 22879 - 22986 64 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEPTVFYVRSLLAKLAIFLLPSMSQTTDGEHIRS >gi|316915459|gb|ADCN01000036.1| GENE 22 23238 - 24341 400 367 aa, chain + ## HITS:1 COG:PA3693 KEGG:ns NR:ns ## COG: PA3693 COG2110 # Protein_GI_number: 15598889 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Pseudomonas aeruginosa # 9 138 10 138 173 145 56.0 9e-35 MPLELVRQDITKMKVDAIVNAANTQLAMGGGVCGAIFRAAGVSRMAAACDRFAPIHTGEA VITPGFNLPSRYVIHTAGPIWRDGKHDEERLLRSCYRNSMELAARQGCASIAFPLISSGI YGYPKAEALHVALDEIRRFLGDAADSGHDLDVYLCVFDKTAFEISSSIDKRLRAYIDDYY VAEHEDTLGSRTYELLALQRFSDNKPKADRAVPSGVLDMPDFLGDMGETPVYSAPSAAPS PKSAGHVDDAVLSNLDEPFNIILLRLIDAKGYSDVEVYKRANINRKLFSKIRCGDGYMPS KKTVLALAIALRLNIDETQDILACAGYALSHSVKFDVIVEFFIVHEMFDVFTINEMLFRY DQPLLGQ >gi|316915459|gb|ADCN01000036.1| GENE 23 24485 - 25171 202 228 aa, chain + ## HITS:1 COG:no KEGG:Ccel_0193 NR:ns ## KEGG: Ccel_0193 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 10 223 4 213 217 216 50.0 7e-55 MGKNDVGNNGRTELVFVVDRSGSMGGLESDTIGGFNSMLSKQRTIAGECRVTTLLFDHRI ETLHNHLDIREVNDLTSRDYWVRGSTALLDAIGLAIDRMIVTQRHTAAAYRAQHVLFVII TDGYENASRRYSLHQIKQMITYERERYHWEFVFLGANIDAEQTAGDFGISPRCATDFHAD GQGIKASFEAVACAATAVRGGADLDDLSAPDFLGGVRDDYRSRRRMKR >gi|316915459|gb|ADCN01000036.1| GENE 24 25261 - 25749 659 162 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 154 1 145 147 149 51.0 2e-36 MKVVLQRVSEASVDVVNELGTLDPTFEPQQIGPGFMILVGVTDEDGDKQIAWLAHKILNL RVFEDAQGKMNRSIQDIGGEILSISQFTLFADVHKGNRPSFIKAGKPEHADLMWIKFNEA LRSGGVPVKEGRFGAHMRVGLVNDGPVTIVIDTEHDMPDGTR >gi|316915459|gb|ADCN01000036.1| GENE 25 25910 - 29029 3559 1039 aa, chain + ## HITS:1 COG:SPAC513.05 KEGG:ns NR:ns ## COG: SPAC513.05 COG0383 # Protein_GI_number: 19114891 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Schizosaccharomyces pombe # 65 1003 94 1046 1077 444 32.0 1e-124 MFLKPEQQLERCKRIVRQRVDPHIHPSIAQLAVESFDIPGEPMPTDEFFAKLNRGDIDFK PFTLGSEWGTTWGTVWFRLTGTVPAGYPKGKPLELILDLGWYPHSCGGHIEGLVYRADGT AIKAVHPLNYWVPFIDAEGNAQVPVAEDGSFTLYLEAASNPLLLGVPPFIETELGDHATG KPDEPYVFKSADLTEFDARFENYSVDLDVVSSLMEFADKQSPRYWQLAKALQRSLNAYDE RNPESVEAARAALAGVLAKPANASAMNVSAIGHAHIDSAWLWPVRETRRKVARTVSNALA LMDADPDFKYAMSSAQQYAWLEEDHPDIFKRMKRRIEEGRFIPVGGMWVEADGMLPAGES LIRQIAYGRKYFKEHLGVEPKGVWLPDSFGYTGAWPQIARRAGYEWFLTQKISWNDTTKF PHHSFMWEGIDGSRIFTHFPPADTYAAWCKVQELDYAEKNFQDKDLADRSLLLFGFGDGG GGPTRNMMEHLHRYENLEGVSKVSVEEPNDFFDKAHRQLAENAGPEMPVWKGELYLELHR GTLTSQQGMKRGCRQEESLLRTVEYLGAAATLADPNYAYPREELDRIWKTLMLNQFHDVL PGSSIAWVHREAREDYRRDLKRLAEIAQDMCAVLRKANPQADLLAEARISQFRNDGAAWR ASRINEPTNALSVLTQTLDNGRVLLANGVLSVTIEADGTISSLLDEEHGRELVPAGTRLG QYELLKDEPAVWDAWEIERESLLMANAMTGSIESVDTENGAARVRVRTADDDTVITTTIT LRPGSHTLDFHADMDWHERERFLKVDLPLGIVADQATYDCQYGLVRRPIVKNTASDEAKY ESSTNRFAIIGDAGYAAAVINGSVYGSDATPIAGNAAEGRDSGTMFRLSLLSAPTFPDPR TDIGAHEFDWSVVANATVGSALDAACALNAPMLHDMPDLAPLASVESANGTVVLDWIKLA DDGSGDLIVRAYEAAGGRADATLHVCPALAGASVHETNVLEGDDLAADLPVALQDGRQNA EGATLHFGPFQLATLRITR >gi|316915459|gb|ADCN01000036.1| GENE 26 29151 - 32303 2835 1050 aa, chain + ## HITS:1 COG:SPAC513.05 KEGG:ns NR:ns ## COG: SPAC513.05 COG0383 # Protein_GI_number: 19114891 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-mannosidase # Organism: Schizosaccharomyces pombe # 68 1012 97 1045 1077 451 31.0 1e-126 MFLLPNQQLERCDRVMQQRVKPHIHTTLAACTLRSFHNPGEPVPSSEFLAKVRNGQVPFE PFRVPGVWGTTWGTTWFEVNGHIDMAAVKGRKVELMVDLGWLDHRGPGFQSEGLVYRADG TAIKSANPRNHWIPLVYADGSSTVELDEHGDFTVYIEAAANPFVEGPTPFSPTELGEEAT GACDFPYTLSRMDITIFNEDVFAYDMDLETVSSLIRELKDDDPRYWQLAKALQRSLNIYD ERDLETVPAARAALAGVLAEPAASSAINHIAIGHAHIDSAWLWPVRETRRKVARTVSNVL ALMDEDPDFTYAMSSAQQYAWLEEEHPDLFARMKRRIEEGRFIPVGGMWVESDNMIPSGE SLVRQITFGRRYFKEHLGVTPRGIWLPDSFGYTGSWPQIARRAGFDWFLTQKISWNDTTK FPHHSFMWEGIDGTRILTHFPPSDTYCSWMSMHELMYSQRNFLDKDLSRNAILLYGFGDG GGGPTREMTARIRRDHDLAGVPKIEFGTPDQLFDRVRKDIVDDAQGETPVFKGELYLELH RATLTAQQDMKRGCRQEESMLRVAEYLCAAARIKNPDYVYPREELDRIWKTLLLNQFHDI LPGSAIAWVHRQARVEYARDVARLNEIALEAGRAIAAVEPDDATITDAVIAPYSRQACEA WVVRPASSRAEAGTASMARVAVTHDGDAIVLDNGQLHVRIEADGTVSSIVDQRTNRELVP AGTRLGRYEMLKDEPFHWDAWDIQRDAFLTANALSEASITSVDETANGGAVVHAVTRAKG VEIRTGIALRPGSATLDFTADVDWHAVEQFLKVDMPVTVQAVNAQYECQYGLVERPINKN TRSDDAKFESCTHRFVRIADADYAAAVVNASTYGSDVSPIHADTAHGTGRGTMVRLSLLS APLYPDPRTDQGAHSFAWSLVADADMNAVLDEAARLNSPVIGELPDLVPLVSLTDVTGTI VLDWVKLADDGSDDLIVRLYEAAGGNAAAALRLDAALADAKASVQEVNLMEEPELDAELP RALAGDEPMPADGAVVSLAPFQLTTLRIRR >gi|316915459|gb|ADCN01000036.1| GENE 27 32691 - 33983 2034 430 aa, chain + ## HITS:1 COG:all1027 KEGG:ns NR:ns ## COG: all1027 COG1653 # Protein_GI_number: 17228522 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 5 427 8 428 432 174 29.0 2e-43 MFSMKKILAIAGAGAMLVSVAACGSGTAGDDGGKKEISFQTWNLKNDKYTPYFEALIKAY EKDHPDVTVKWLDAPSDGYEDKLSSQAAAGELPDIVDGGNSILYGLAKAGALLDVSKQAP DAEKDYYEGAWKSVTMQGNGVEKGAYGLPWYVNDGPTYWNTELMQKCGLDPNKIPTTWDE YFAAGDTIVQNCKDVYLGTTMGYNAEDLMTAGVKSFMNDDHSKYTFNDEAGVKQISRFVE LYKKGGIPPEALDSSWSQAADLFQRGNLVSMAGSAYSADGFKQNAPDLYKNLAVGPRISN DGKSASVAYEMLGISANSKHPDVAIDFARFVTNEKNQIEFDKKASVFPSAKGGLDDDYYK SIDESTLEGKALKITLDQVKDGYGSRPAEFTDNNGYKNFQQQIALAMQGKQTAKEALDKS VEFANEKLAQ >gi|316915459|gb|ADCN01000036.1| GENE 28 33980 - 34951 991 323 aa, chain + ## HITS:1 COG:slr1202 KEGG:ns NR:ns ## COG: slr1202 COG1175 # Protein_GI_number: 16329975 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Synechocystis # 32 313 7 286 298 172 38.0 7e-43 MSNAALAADRSEARTASDRPEPMNTRHGKKQDRKFGTIIAPYLFVLPAFVIVFVFIVLAA LNTFRLAFTDSTLLRPGKFVGFENFIKLFHDEYFLTALLNSTIYVICVVPFMVILPLILA YLVKGNSRIMGFFRTAFYMPVVMSAVVVGMIWTNLLDSAGLVNSVLKALKIISKPIPFLT DRWGVLFSSMFVTIWLGLGYYMVIYLTALANIDESLYEAASLDGAGPVRQFIYVTMPGVR STMMLIMMLSTIAAFRVFNEIYVLTNGSAGPGGMDMTMSMLIKREGTGIQARTGYASAIS IVVLVIVGVMLIVQQIVQKRGED >gi|316915459|gb|ADCN01000036.1| GENE 29 34951 - 35790 1148 279 aa, chain + ## HITS:1 COG:all4824 KEGG:ns NR:ns ## COG: all4824 COG0395 # Protein_GI_number: 17232316 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Nostoc sp. PCC 7120 # 1 279 1 279 279 195 36.0 8e-50 MNTNTHKVTVGKVVQYLILILMFLLLVGPFVWELSLSFKGKGDNVYAVPPYLMPKTPTLE NYISVFKQVPVFHYMLNTLVVCLISIFGNVVFSTMAGYALGRLKWRGRGLVFTMFMGTMV IPIEGVMISQFLIIRSIHLQNTLLAVALPGLCGAFNILLMTNAFRSIPMELEEAAMVDGA NLWQRFFHICVPQVKGTMTVVGIFAFVGAWNDFLWPLIAISDESKYTLTLGMNRLKGMFI QDPRLIAAGALVSLIPIIVFFCCFQRYFFRGLEQGGLKG >gi|316915459|gb|ADCN01000036.1| GENE 30 35818 - 37098 1377 426 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1281 NR:ns ## KEGG: BLJ_1281 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 426 1 426 426 872 99.0 0 MKFGVNYTPSHGWFHAWLDPDWDGIDNDLKQISELGMDHVRIFPIWPYLQPNRTWINKKG VADVRRMVHIAGEHGLDAYVDVFQGHLSSFDFLPSWLVTWHAGNMFTDADAVAAERELVK TMTDELSKEPAFKGLTLGNEVNQLSDRPHPTKMSATDRQIDAWLDALLPTAAGEGHNALY SVNDGTWFIDGHPFTPVQSATKGDMTVIHSWVFNGIAQGYGATSEECSSYALYLAELAKA FGKDSERPVWLQEVGAPENVLETDYTPEFCRKTVERAMDCRNLWGVTWWCSHDVPASMED FPFFEHSLGLFDEQGQLKPIGRTFGELAVQYRSALPAQPKTVAVVIDVDEAGNPVNRSAL GPGGSVCDLWMKLQVAGQRPTIITSQVAANQEALAQRGILELHADEHPYAARYYTAVSDP SFETAD >gi|316915459|gb|ADCN01000036.1| GENE 31 37123 - 37293 88 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227547566|ref|ZP_03977615.1| ## NR: gi|227547566|ref|ZP_03977615.1| hypothetical protein HMPREF0175_1990 [Bifidobacterium longum subsp. infantis ATCC 55813] # 10 56 1 47 47 76 97.0 4e-13 MSRSTAAQLMLIERFPFSYIVFSFFSLFGEYRVLCFALRTAIVRTAIENIRLWNKE >gi|316915459|gb|ADCN01000036.1| GENE 32 37259 - 39538 1743 759 aa, chain + ## HITS:1 COG:SSO3032 KEGG:ns NR:ns ## COG: SSO3032 COG1472 # Protein_GI_number: 15899739 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Sulfolobus solfataricus # 78 720 59 700 754 244 29.0 4e-64 MSINCAAVDRLIDSMSFTQKVGQLNQRLLGWKSVERNAAGRLVASDELKQEIDRWGGLGT LYGLLRADPWSGQHWGNGIRPEERTEAIAVVQQTVLERGAHGIGVLLSEEAPHGHQALGG TVLPTNLGLGATFDPQGVQEAEAAVAAELAASGIHIALVSGLDIARDPRWGRCEECFGED PLMAARMCEAIVTGMQGEHRSKVGHGGVAVVLKHLAAQGEAVGGRNGQSAVLGPHDLHEI HLPPVAAGVRAGALGFMAAYNDIDSVPCCANPWLLKDYLRDQLGFDGIVMADGLAVDRLE DMAGSIPAAGRAALLAGVDVSLWDEGFARLEEYVDDEQVAAAVDTALRRVLELKAMFGLL PEDGADTAAIAMPSADAIAQATADGREQAKRMAREAITLINDGQSAATLDDIRSVIADAQ AGPVIVAGPFADDFGCFLGDYTAPLPADEQSSVYRQLVARLGEDRVLLAAKPSDVSADRW ASAAAVVFVCGSTSERSYDSEFDDNGAAKAVAEYGATCGEGVDLSDIRLPWHQDEMLDEV VALTTAPVVSVVVCGRAHVLTHVIGQSAVTIWVGYAGQYGPQAVADVLIDGAGLPGRLPV TLPAHPAAIPVRYNDRQSAAHVYKDAAEPVLREFGYGAGSLAGVTFSGMHADAESRANEV LVQVTAHAGDHKTAGSVNLFAHVSGGRRIPRLAVLVDSVALTLEAGESHAVSFSVPFERL MDEADDNVRVTFALTSALNNDDTRHTDDCDTSVSIVIHR >gi|316915459|gb|ADCN01000036.1| GENE 33 39866 - 42538 2873 890 aa, chain + ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 35 624 26 554 556 233 29.0 1e-60 MATLAALAAPASATDTMPWGGQYADTSHPEQSAGANQPYQHGYTGLDILNWNPDADKDSE YLRSRVPLQTRIAANAATQKDPNLPADTEMFNLAGDYGNAFFESFHDNNVFSQYLFNYWQ YTDYYGTWHGQPTANVPKSLHDEKAQSDWTQKWFEFGTLNLPNAAYTNVAHKNGAKSIAT IFYSGNDRGEQTYKDLLQGKRADGTYPVADKLVEIAKYYGFDGYFVNQESSVNSADVPAY QDFMKQIIDQGIYIQWYDSATYPNGGVSYQNMFNDANSPWVQDPNKGKISDSIFLNYWFS GNMLQDSADHAKSLGIDPKYAVFAGIEAGQKKFGSIASNANYMNVNLDADGKPYVSLAAL GTDFVSHELGDDKKVYPKYQNQVFDRERRLWTGSSTGEKGTTDISDPYIDDGTSSDSWKG FASQIAERSVIGGPVFSTSFNTGHGLEWRDNGEQTSNQQWGNINLQDILPTWQWWIDADS DPLQADFDYGKKYEAAPRFNYTKVGGYEGGDSLVLSGKLSSDNTVRLYKTDLSVAAGSKV ELTYNKLNSDDSKLQLGLIFADDTKTIVPVDMADGGASNGWKTATVDLSQYAGKKIATLG LIVKAGANPIDNYQVNIGKITVTDGAAYTPAAPTNFQVERAYADSDELTVKWDLADYSTA KNYLLYLDNTFLGGRYDDTLYVKHLPAKTGTLKLYAVGADGSRSLAAEAPLNEAAAVSGV KVEPGKDGNVKVSWTNPQVSGEKTVTVKSDTGSWRYAAKPYSQTVKVAADKSKVTIANAP VDSSRYVVNVDNAGGTTATATGAFADAAIEPYPACSVIWNGDNVTLARPETQDWRYLYMT EKWIGENGKQQQENQLGASYTYSQNTPPITGIIRGRTTPASYTRSIPRQS >gi|316915459|gb|ADCN01000036.1| GENE 34 42546 - 43187 755 213 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1279 NR:ns ## KEGG: BLJ_1279 # Name: not_defined # Def: endo-beta-N-acetylglucosaminidase family protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 201 924 1124 1124 313 90.0 2e-84 MQVEDYSGNKTDPVKIPTADELAKCTVADPTQPDAKKSTLTAVDGSAVADGKAIRTVQAM VKDSFGNPLANAEVAFELPEGVSAIGGNTTVKTDAAGVASLNVVSTKVGKYTVKAVLNGN AIGKGVTVEFTKVAVTPNKPGDQNKPGDTKPNKPSQNDNKNNDKNGASLSATGSSVIAIV AAMVVLLGAGAVVLRARSKTEWFVAIRVLILVP >gi|316915459|gb|ADCN01000036.1| GENE 35 43402 - 44511 772 369 aa, chain + ## HITS:1 COG:CC1627 KEGG:ns NR:ns ## COG: CC1627 COG1609 # Protein_GI_number: 16125873 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 18 363 3 333 335 113 28.0 7e-25 MRSAREASSSSDGTQRVSLKDIADELGISQTAVSFAINDRPGVSAETKRRVKEAAARLGW TPVYAAQALGSSKTMTIGFAPARSTQGLTDESFMLHFMAGVHASLSPKGYGLLYRPCRFL NEEMSVYKDWASRKRVDGVILVDLRADDPRPELLKNLGVRAVLAGGPDPNNYVPSLSIDD SRTMGTVLEHLSSLGHRRIAYLSGDPNLDYSQGRVAAFRAFAKRRKLESINIEFTDFVAE QAAMLTLEMLHSPKPPTAFIYETEILAAASLHAMAEDYSARQMEAGEGHAEVYPNGLPAI VSFEDSFICEAAYPSITSAHRDASEYGAKVAKLLLKVLAGEQVSGNRRILTPKLVVRDST AKPCNSCGI >gi|316915459|gb|ADCN01000036.1| GENE 36 44623 - 45858 1817 411 aa, chain - ## HITS:1 COG:yihS KEGG:ns NR:ns ## COG: yihS COG2942 # Protein_GI_number: 16131720 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Escherichia coli K12 # 17 407 17 408 418 283 38.0 4e-76 MTNNPRYTLGTEANRIFMASETYELLKFGKGFPAPNGGSGWLNADGTLDPSHGVETWITS RMAHVYSIGAMLGYLGAGELADAALKGLTGILHDDEHGGWYPQVFADGTHAPGKVCYAHA FVILAASSALLAGRPGAKELLDEALATYDKHFWNDEIGLAVDTWNTEFTELDPYRGLNAN MHTTEAFLAVADATGDNAYRVRAGRIIDHVIGWAKHNEWRIPEHFKSDWSLDLECNVDKK DDQFKPYGATPGHGIEWARLITQWALSSFANLDGAQPYVDAAEHLFARAVADAWNADGTV GLAYTTDWNGKPVVTDRMHWTLAESLNTSATLYAATGEEMYANWYATFAQYVDEHVIDHE SGSWFHQLDKNNHVIGTVWPGKSDLYHAFQSTLIPFLDPAVSIATAVKNAA >gi|316915459|gb|ADCN01000036.1| GENE 37 45925 - 47223 1355 432 aa, chain - ## HITS:1 COG:L133416 KEGG:ns NR:ns ## COG: L133416 COG3538 # Protein_GI_number: 15673481 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 6 431 5 430 431 572 63.0 1e-163 MTTTAIPKSVSDFLQRITDLCGTEHADWAENFNACFADTLTTTVKRHDDGTTFLLTGDIP AMWLRDSTAQLRPYLALAAKDDDIANLIAGLVRQQFRYITIDPYANAFNEEPNGASWDKD DQSDFSSPWLWERKYEVDSLCYPIQLAWMLYANTGNTGHFDAEFIAGVKKILDVFETEQH HERSPYFFIRDTDIPTESLSNNGKGSPVAYTGMTWSGFRPSDDACTYHYLVPSNMFAAVV MGYLERIFGGEILNDADIAARSGELRRTITEGIEAHAKTTNRNGETIYAFETDGLGHVNI MDDSNVPSLMAAPYLGYCAPDDPTYLATRRTLLSDENPYYYEGEYLKGIGSPHTPPRYVW PIALSIEAMTSDNKDFKAHILDRLVATDAGTHLMHEGIDVNDPTKYTREWFSWSNMMFCE LVMDYFDIRVKH >gi|316915459|gb|ADCN01000036.1| GENE 38 47435 - 47527 80 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVGLYFLTEFKRDTYTPPQLKAMDEKNEA >gi|316915459|gb|ADCN01000036.1| GENE 39 47499 - 47801 376 100 aa, chain - ## HITS:1 COG:STM3792 KEGG:ns NR:ns ## COG: STM3792 COG0738 # Protein_GI_number: 16767076 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Salmonella typhimurium LT2 # 3 59 57 113 438 65 56.0 3e-11 MKTAFVQSAFYAGYFIVAIPASLFIKKTSYKIGIMTGLAFFALGCFIFFVDRISASYPLS KVRETRVLTVYMIIGCVILLGTAFILPRHRAVGRRPVLPD >gi|316915459|gb|ADCN01000036.1| GENE 40 47868 - 47978 255 36 aa, chain - ## HITS:1 COG:no KEGG:BLD_0203 NR:ns ## KEGG: BLD_0203 # Name: fucP2 # Def: fucose permease # Organism: B.longum_DJO10A # Pathway: not_defined # 1 36 1 36 36 66 100.0 3e-10 MDKTASKNVAWVESPDGYLDRTPVLQFSMTSVLFAF >gi|316915459|gb|ADCN01000036.1| GENE 41 48086 - 48475 737 129 aa, chain - ## HITS:1 COG:no KEGG:BLD_0204 NR:ns ## KEGG: BLD_0204 # Name: gloA1 # Def: lactoylglutathione lyase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 129 1 129 129 272 100.0 3e-72 MSIRDTVTGVQHVGIPTTDLEGTIAYYERLGFECLGIYPNGEDRCTFLRLNNLTLEVWTM DPTPMENGAINHFALDSTDIEASFAEAQKLGLNFAEGSIQHIDTFWSNGIRYFNVLGPNH EVIEFCQIM >gi|316915459|gb|ADCN01000036.1| GENE 42 48552 - 49448 1492 298 aa, chain - ## HITS:1 COG:MA1840 KEGG:ns NR:ns ## COG: MA1840 COG0524 # Protein_GI_number: 20090690 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Methanosarcina acetivorans str.C2A # 7 289 32 318 326 157 35.0 2e-38 MTTPIVLSLGELLWDMLPSGKRAGGAPVNFAYHAMKNGTEGWAISAVGEDELGDELIAKA DEAGINTVIQRNAWPTSTVEVALKNGIPEYTIVKGVAWDHILYTRQLIDVVSKADAVCFG TLALRSPESHATITELLKHTKPGAMKFFDINLRGDHYSKELIEELLKAATVFKINDEELL LLRDMFDIRGTSGEDASRWFLEEFDLDYVILTAGSAYSTIISRKGEVSTLDTPHVEVNDT VGAGDSFSGTFTARILLGDTLAEAHRKAVNTAAYVCTQAGAWPQYPAEMPDYLAEIGK >gi|316915459|gb|ADCN01000036.1| GENE 43 49521 - 50735 344 404 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 86 390 4 318 319 137 30 2e-31 MATNTTHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGM IEETGDLEGSKNRRSIGLKLNTTHFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVCDN TINDSIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSNMQGWRKINFIDEFA TAFRVPVFIEQDARAGALAHYLFDPSVHADDNLAYYLVGEGVGLGVIDNGRLINGFLGAA TEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDTLIADGTVVPGAADMTHTEAARALFA KAGDGDEAAIAIVREVARYVGYGCVTIFNGYNPEHIIIGDIVSEAGPILLDEVRATVAER AIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVFFDVS >gi|316915459|gb|ADCN01000036.1| GENE 44 50671 - 50805 88 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRERLDSETLAWEVAWVVFVAIGLKSSLSAPLRVVPLVFESELD >gi|316915459|gb|ADCN01000036.1| GENE 45 50962 - 51876 332 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 6 269 1 283 323 132 30 4e-30 MSENTMNNLKIGVDVGGTKIEAVLVDAMGTVLGSARIPARHGNDAVIEDIVAVAHQAAGE RFDEVRAIGVGTPGTVDSASGHVGNIVNLDVVSLDMGPLISQRSGVPAHVENDVNAAAVG AATVLGGADGMAGTIAFLNFGTGLAAGIVENGVLMHGYSGAAGEIGHIPVEPHRLKCPCG QYGCLETVCSGASVGRLWPNADPPMPDLIRRAKKREAEAVDVLDMVVRAIGDTIQILAQS VDPRLIVLGGGMAKTGEPLVEVIAAELRRRESQCRFLETLDLPARLRLAPVDQPVGAIGA AMAA >gi|316915459|gb|ADCN01000036.1| GENE 46 52016 - 53245 968 409 aa, chain - ## HITS:1 COG:VC0993 KEGG:ns NR:ns ## COG: VC0993 COG1940 # Protein_GI_number: 15641008 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Vibrio cholerae # 57 384 12 371 404 125 26.0 2e-28 MKFHNSFNDEIALHRLSCVWNNNRRPLAHHQAGGNMSYLGLNTTTDDHAAKASPADVRRK NRQLIFRLLFPTNQYSRAELGRRTGLSRVAVSDVVGRMLEEGLLRETGQAPSGGKGKRGT LLSIDIDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKML GMSDGEVIGIGVASPGVVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLT ERFFGQGGPNMLFVRIERGIGSAILLSDTPVIGELHAAGELGHISIDLDGPLCPCGKHGC LETMISGTALKKQLSAADVEQHQGILARAGRYLGQALSMPVGLLDMADVCVYGQPNIINE TFIDAAQQYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAVVFQHLAK >gi|316915459|gb|ADCN01000036.1| GENE 47 53372 - 53792 338 140 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 140 1 140 358 245 92.0 4e-64 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCPET Prediction of potential genes in microbial genomes Time: Fri May 13 13:18:43 2011 Seq name: gi|316915453|gb|ADCN01000037.1| Bifidobacterium sp. 12_1_47BFAA cont1.37, whole genome shotgun sequence Length of sequence - 5157 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 392 174 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 2 Op 1 12/0.000 + CDS 588 - 1400 1265 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 3 2 Op 2 . + CDS 1456 - 2739 1575 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 2786 - 2843 17.1 + Prom 2761 - 2820 2.5 4 3 Tu 1 . + CDS 3019 - 4653 3079 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Term 4746 - 4774 -0.9 - Term 4510 - 4551 -0.0 5 4 Tu 1 . - CDS 4738 - 5157 538 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316915453|gb|ADCN01000037.1| GENE 1 3 - 392 174 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 110 210 312 317 71 44 1e-12 PDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYFADPYSSWQR GSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEAFADELLELQ DQQGCCTSK >gi|316915453|gb|ADCN01000037.1| GENE 2 588 - 1400 1265 270 aa, chain + ## HITS:1 COG:Cgl2592 KEGG:ns NR:ns ## COG: Cgl2592 COG0363 # Protein_GI_number: 19553842 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Corynebacterium glutamicum # 3 258 2 245 253 193 45.0 3e-49 MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVS GVRGFALDEYIGLPLTHPESYHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVAL AGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGTRVKTLAEQTRIDNARFFDN DINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGVSAFCPASALQMHPHAT IIVDEEAASRLRHKDYYRYAYTHKPAWQGI >gi|316915453|gb|ADCN01000037.1| GENE 3 1456 - 2739 1575 427 aa, chain + ## HITS:1 COG:MT3435 KEGG:ns NR:ns ## COG: MT3435 COG1820 # Protein_GI_number: 15842927 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Mycobacterium tuberculosis CDC1551 # 83 410 11 329 346 181 40.0 2e-45 MSDRNEIVSRVTAALEGKPAPVAIRNARKVDARGERRGYWVVSDAAGVIMAAGTGEGTFE HCCRTVGLDPADRNAVIDAEGRILTPGYVDIHAHGAWEKSFDDGPDGIDVARAGHAVHGT TRQVLSLITNPVDVICRNIRTVRATMEPGRPDILGCHLEGPFLALARKGAHDPECLKDPV PDIVDKMLEASGADPASGKLGCIRQITIAPELPHGISAIRQFAAAGVVPAVGHCDADYET AKAGFDAGAGIMTHMFNAMNGLHHREPGPIPAAVEDPRVTIELINDGFHVQDPMVSLSFR FAPHRTAFVTDAMAATDCPDGAYKLGALDVNVVGGHARLVSNGAIAGSTLLLEVAVRRAV CELGFSPVDAVEAATLTPAKAFGFDRPNPVTGVPIGLIAPGFAADFNLADPADWTVEQVW CAGRKLK >gi|316915453|gb|ADCN01000037.1| GENE 4 3019 - 4653 3079 544 aa, chain + ## HITS:1 COG:PAE2391 KEGG:ns NR:ns ## COG: PAE2391 COG0747 # Protein_GI_number: 18313310 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Pyrobaculum aerophilum # 38 541 49 527 530 270 35.0 6e-72 MNSKKILAAAVSVAAIASLTACGGVKDDTAAGADSGNAITIGTTDKITSLDPAGSYDNGS YAVQIQVFPFLYAQDYNTSELSPDIAADDGTWNDDGTEFTVKLKDGLKFANGNDLTASDV KFSYDRIKKINDPNGPSSLLANVESVTAKDDTTVVFKDSVPFDVTLKQVMSSPAGPIVDE DTFDADKLTDADTIVSKKAFAGPYTLTAFKINESAAYAKNDSYKGLTPAKNSAVQVKYFA DASNLKMAVQQGQIDVANRSLSPTDIEDLSKDSKVKVVKGPGGEERFIAFNFKIQPYGES QPDADANKAKAVRQAVANLIDREELSTKVYKGTYTPMYSFIPDGLAGHDDTLKSAYGDGN GKPSTEKAKKVLADAGVTTPVDLKLQYNNDHYGSVSADEYAALKSQLEAGGLFKVDMQST EWTQYNKDRVVTDDSDGVYPVYQLGWFPDYSDPDNYLSPLFRDGNFVNNGYSNKEVNDLI VKQAGEKDESARGDILKQIQKLETEDLSTIPLLQGAQVAVTGTSVKGVTLDASFRFRYAS VTKG >gi|316915453|gb|ADCN01000037.1| GENE 5 4738 - 5157 538 139 aa, chain - ## HITS:1 COG:tra8_g2 KEGG:ns NR:ns ## COG: tra8_g2 COG2826 # Protein_GI_number: 16129365 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 3 134 247 376 383 152 59.0 1e-37 GAIGTLVERTTRFTILLHLPDGHDAEHVQQAIIDKMQHLPKLLRNSLTWDQGAELALHKR IGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPR KTLGFMKPSEKIIELLDAA Prediction of potential genes in microbial genomes Time: Fri May 13 13:18:48 2011 Seq name: gi|316915432|gb|ADCN01000038.1| Bifidobacterium sp. 12_1_47BFAA cont1.38, whole genome shotgun sequence Length of sequence - 12519 bp Number of predicted genes - 20, with homology - 19 Number of transcription units - 13, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 446 211 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 2 2 Tu 1 . + CDS 601 - 942 297 ## COG3328 Transposase and inactivated derivatives 3 3 Tu 1 . + CDS 1189 - 1302 63 ## gi|239622152|ref|ZP_04665183.1| predicted protein + Term 1490 - 1516 0.1 4 4 Tu 1 . + CDS 1716 - 2039 56 ## gi|239622151|ref|ZP_04665182.1| predicted protein - Term 1811 - 1872 -0.5 5 5 Tu 1 . - CDS 1887 - 2960 823 ## Blon_1392 signal transduction histidine kinase-like protein 6 6 Tu 1 . - CDS 3026 - 3721 338 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 7 7 Op 1 . + CDS 3850 - 4362 575 ## BLJ_0994 hypothetical protein 8 7 Op 2 . + CDS 4359 - 5249 430 ## BLJ_0993 hypothetical protein 9 7 Op 3 . + CDS 5246 - 5752 125 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 10 7 Op 4 . + CDS 5731 - 5925 106 ## COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component 11 7 Op 5 . + CDS 5931 - 7091 654 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 7197 - 7256 4.3 12 8 Op 1 . + CDS 7282 - 7545 273 ## BLJ_0990 RelB/DinJ family addiction module antitoxin 13 8 Op 2 . + CDS 7549 - 7884 297 ## BLJ_0989 RelE/StbE family addiction module toxin - Term 8228 - 8266 -1.0 14 9 Tu 1 . - CDS 8388 - 8972 527 ## COG2184 Protein involved in cell division 15 10 Op 1 . + CDS 9362 - 10003 866 ## Blon_1422 hypothetical protein 16 10 Op 2 . + CDS 10096 - 10389 229 ## BLD_0501 hypothetical protein + Prom 10465 - 10524 1.6 17 11 Tu 1 . + CDS 10729 - 10809 82 ## 18 12 Op 1 2/0.000 - CDS 11040 - 11261 247 ## COG0388 Predicted amidohydrolase 19 12 Op 2 . - CDS 11392 - 12012 564 ## COG1051 ADP-ribose pyrophosphatase - Prom 12071 - 12130 2.6 20 13 Tu 1 . + CDS 12193 - 12517 248 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316915432|gb|ADCN01000038.1| GENE 1 3 - 446 211 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 91 147 1 57 57 115 100.0 7e-25 MNASSRSAANSRLSRATARVTVDRETSAPCSSLNRSQILVAVCRCLRQFARSSASHCSIT GRYGSITDARGFLTDGTADRSSFARYLRTVGSLTCVFRAIDATDSPFRRKRRIDCTWGML IIILSGPFWRRYKHHPVKTIPWSACSA >gi|316915432|gb|ADCN01000038.1| GENE 2 601 - 942 297 113 aa, chain + ## HITS:1 COG:MT0947 KEGG:ns NR:ns ## COG: MT0947 COG3328 # Protein_GI_number: 15840343 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 3 108 330 435 439 145 70.0 2e-35 MLDKWEARYPAIRRLWMDAWERFIPFLDYDVEIRRVICTTNAIESLNARFKRSIRARGHF PDEQAALKCMYLTVRSLDPTGKGRIRWSARRKPALNAFAITFADRWPSEGTQQ >gi|316915432|gb|ADCN01000038.1| GENE 3 1189 - 1302 63 37 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622152|ref|ZP_04665183.1| ## NR: gi|239622152|ref|ZP_04665183.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 32 117 148 275 68 90.0 1e-10 MWGTGSPAVAIEHCHNPHTRPDALVLDMALGGKNHGR >gi|316915432|gb|ADCN01000038.1| GENE 4 1716 - 2039 56 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622151|ref|ZP_04665182.1| ## NR: gi|239622151|ref|ZP_04665182.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 54 88 141 321 70 70.0 3e-11 MPADEHEYQQQLDELRDAASRAMGHTHEVIDSLEEHTPAQASRTPNKPTGSWRPSFPLPA CYRQWNGDVRVPVVGIIGDVERPGHGFDNGSVSLEAAAESEPYRFVL >gi|316915432|gb|ADCN01000038.1| GENE 5 1887 - 2960 823 357 aa, chain - ## HITS:1 COG:no KEGG:Blon_1392 NR:ns ## KEGG: Blon_1392 # Name: not_defined # Def: signal transduction histidine kinase-like protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 27 357 1 331 331 616 99.0 1e-175 MGVYSSQNLLSWSTIRISLLVAVLCAMLGAAPVWAACLLFAVSGYALLWLFSPLTTIMIA ALTSIAVLSFVKPRLGAASALAALAALAANNMQNNLTSSNIVGMIIMCLCPLSLGFSLNL LFAQRQATATLRQRLDREHTARHLHDTISNDLAYMILRIDQASRSDCPADREQYQRQLTD LRAIAETALDHTHQVIRQLERTDKPDDCSRIVKTNNDDKTDRKIEQQRERLDGIIQSQRR RLGGLGFQGDDILGTFDHPLADDILDLLEGLLNELYANIAKHAAPHEWYAVTISFDRRHV IISASDVLKDEAVRLGLGSGLKRYRTVIESMSGTFDITDDSDNWNANITIPLSVTRR >gi|316915432|gb|ADCN01000038.1| GENE 6 3026 - 3721 338 231 aa, chain - ## HITS:1 COG:alr3156 KEGG:ns NR:ns ## COG: alr3156 COG2197 # Protein_GI_number: 17230648 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 63 231 53 220 228 80 28.0 2e-15 MGGMTDLSDSHTISIGVLDNDSLALNAIAVMTSRLSPRFHIIWSTTSPAMALQRCMTHGA RPDVLVVDMALGGITGADICARIRRRTPTIGLVCVTSYDLDPYRQDAVEAGAQCLIAKDD IVKELPQAIRCAAQGEPVPGTGFPTAREANRKLNEGHATEGRLPENDKPSLSSRERDVLR LYAHGSSTDEIAALLNVSKGSVFTYVNRACRKLHAADRKEALAICARYDLL >gi|316915432|gb|ADCN01000038.1| GENE 7 3850 - 4362 575 170 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0994 NR:ns ## KEGG: BLJ_0994 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 170 2 171 171 331 99.0 8e-90 MKSGTRRRAAILTAVMLLSGCGTTPNRGTSGSGGMLTWQQANEEYKATVEDFPFELMNGD AFPANIPKAQAASSLYAKGSGEGQAYVYWQCSVERDILDNSQTNAEAARGALQQLRKLLD TDWFKNYYEDKDGIYENDVIGKSELGDYSTMRDFYTTDCTWYRHENGLTK >gi|316915432|gb|ADCN01000038.1| GENE 8 4359 - 5249 430 296 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0993 NR:ns ## KEGG: BLJ_0993 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 296 1 296 296 465 99.0 1e-130 MNAIAPFKCLLACVTATTMCAMMTACSPSRTPSSDASSTAKRPASTVEVRRGGITPLSSS STGVQVAPVFSLTTPAKGWFHSTTDQGAYVHAGDVLGTVGDQQVTAPVDGVIETVAQDND MAADYPLFSIRYGGMSASVDATALLATIDPDQPLTGRFQITDAQGPTDCAAVVNDGVATP PSSAEDTAGSATTAHGTESTRTLQCLFPKDVQARPGQNATVVLTATAVEDALILPVTAVA GRLASGQVSRRDGDSFATVNVKLGASDGTSIIILDGLEEGDMVSATAPNLTPGAQS >gi|316915432|gb|ADCN01000038.1| GENE 9 5246 - 5752 125 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 25 155 38 169 329 52 26 2e-13 MSTLIRLEHLSAEVRLPDGERLTTVDDVSASFERGTSTAIIGKSGSGKTSLASIVGLLNN DYDGTLSYDGRDCAAWNDADRARFRCRHVGFVFQNYSLIPHLSAWENVALPLQYRGGIPL RVIRRRASRMLHTVGLGSRTVCSMPSRLSGGEQQRPPSPERWWAIPIC >gi|316915432|gb|ADCN01000038.1| GENE 10 5731 - 5925 106 64 aa, chain + ## HITS:1 COG:STM0507 KEGG:ns NR:ns ## COG: STM0507 COG4181 # Protein_GI_number: 16763887 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component # Organism: Salmonella typhimurium LT2 # 2 63 163 224 228 81 64.0 4e-16 MGDPDLLICDEPTGALDTETGDMVADILFRHVRELGVTLILVTHDPQLAARCERRLTIDR GRLS >gi|316915432|gb|ADCN01000038.1| GENE 11 5931 - 7091 654 386 aa, chain + ## HITS:1 COG:STM0942_2 KEGG:ns NR:ns ## COG: STM0942_2 COG0577 # Protein_GI_number: 16764304 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Salmonella typhimurium LT2 # 177 385 180 392 395 65 27.0 2e-10 MIAKDLRINPLRTSLTALSMFIGIIALIAGVLVGTLGRDYLEAVNARLGGKSPTYSAIVD VPSSVNIQVVTALQERLAHFRPGIASAQYHLNDLAIWASSDDGNTEIRRVTIIITDAERT RIMPAPIIEGTWLTGADEPATLETAVNKSARQYVHDGTVALARTGNPQQVPARVNGVIAD GTDTPTIYVNATTLQRYWPQAWEPDGLTILVHPNEGVDDQHAKTVLDDLLSDVETGSISS WNRSDNADDYEQVIGFLQLGVTVTAILLLSVSAIGMINIGLAGIEQCSHELLIRRALGAT RASIAIQVIGSSVLLGLIIAFAAVLISAVLVWAIPWMMPADSPLEPPAYPYTAAMIAACA SIVTSLVGSLVPAIKAIRLQPALALR >gi|316915432|gb|ADCN01000038.1| GENE 12 7282 - 7545 273 87 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0990 NR:ns ## KEGG: BLJ_0990 # Name: not_defined # Def: RelB/DinJ family addiction module antitoxin # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 87 13 99 99 150 95.0 1e-35 MASVTVRVDADTKQKAANIAEDLGLDLSSVTRAFYKQIVREKRIPLNLSYTIVPPETMEA LDEAKNRLADGQPRFNSADEMFDSLGI >gi|316915432|gb|ADCN01000038.1| GENE 13 7549 - 7884 297 111 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0989 NR:ns ## KEGG: BLJ_0989 # Name: not_defined # Def: RelE/StbE family addiction module toxin # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 97 1 97 97 186 97.0 3e-46 MLKPDYTAAFQRDIKKLKRKHTDLRPLKEVIRLVLEDTADSKEVLRRRHRAHTLTGDLNG VLECHIGNAGDWLLLWIRDDGTAMFMRTGSHDELFGQIAGLHPALNQPTAI >gi|316915432|gb|ADCN01000038.1| GENE 14 8388 - 8972 527 194 aa, chain - ## HITS:1 COG:MT3743 KEGG:ns NR:ns ## COG: MT3743 COG2184 # Protein_GI_number: 15843251 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Mycobacterium tuberculosis CDC1551 # 4 93 1 101 211 80 46.0 2e-15 MIELPETFDTYLIPGTNVLRNLIGATTVTELEAAENDLVSARMLEFQSNLPVAQGTLRQL QQIHRQLFQDIYDWAGQIRTVDIVKGSSQVFQPLAFFDVGVQYAERILDRDIKTARTQEA QNQTATVMNAMPLSGSLGAIRSALAGDPRFADPCGEALYGSKACADFVNEAKNIHARQIA EQFASEQGVRDQPK >gi|316915432|gb|ADCN01000038.1| GENE 15 9362 - 10003 866 213 aa, chain + ## HITS:1 COG:no KEGG:Blon_1422 NR:ns ## KEGG: Blon_1422 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 213 1 213 213 365 98.0 1e-100 MAKRKHTGTVVIAILVAILLAVGVSGWLFWQSVQRVIGEAQQAGEYAAEAQQSVGQGDFK QALEQMDSAGSHIVAARDETQGMLWQAAEYVLYYGSDVKAVRGMLDAAADAATNALPKID SAAQGTLVDFNIEELLSGMNFSDGTLSIPKIASIKQDLSDAGAVLKRVKTSIHAVPQPRT EQITEMVNQGKQVVDQIDETFDTLNTIVEKIPG >gi|316915432|gb|ADCN01000038.1| GENE 16 10096 - 10389 229 97 aa, chain + ## HITS:1 COG:no KEGG:BLD_0501 NR:ns ## KEGG: BLD_0501 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 97 1 97 97 158 97.0 7e-38 MPTRTPIPVSRAMRQISVNLDLARRQQRIPVALLAERSGLSMPTVTKMLRTGNGSFENFL RIARLLGLLDGVQQATDPLNTDIGKLRADEDTPKRIR >gi|316915432|gb|ADCN01000038.1| GENE 17 10729 - 10809 82 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSVNDETRQGALRFWNNDGDALAPQ >gi|316915432|gb|ADCN01000038.1| GENE 18 11040 - 11261 247 73 aa, chain - ## HITS:1 COG:MA3009 KEGG:ns NR:ns ## COG: MA3009 COG0388 # Protein_GI_number: 20091827 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Methanosarcina acetivorans str.C2A # 1 72 235 306 309 60 37.0 6e-10 MQNQVAIVMCNRVGKEGDVTFAGQSVVVDPYGNVVSKADDQEQLIIADIDLTQTAAARKQ RPFLELRRPEWYD >gi|316915432|gb|ADCN01000038.1| GENE 19 11392 - 12012 564 206 aa, chain - ## HITS:1 COG:BH3089 KEGG:ns NR:ns ## COG: BH3089 COG1051 # Protein_GI_number: 15615651 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Bacillus halodurans # 9 200 8 201 207 144 43.0 1e-34 MMATNRTLLEQARELQALAQTGLMYCKDPFDRERYERIRAMAVDMLSTQVDAPAGQVSRL LSAGYPTPKLDTRAAIFDEEGRILMTHENSGEWSLPGGWVDENQSIRSNAVKEVKEETGL DVRGERLIAVQDCANHNALTYPYGVLKFFVLCSRAGGWFSANIETTEIRYFEEDRLPRLS ETRNTAEQIAMCFAAHRDPDWMTLFE >gi|316915432|gb|ADCN01000038.1| GENE 20 12193 - 12517 248 108 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 108 1 108 368 178 97.0 4e-44 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAW Prediction of potential genes in microbial genomes Time: Fri May 13 13:19:32 2011 Seq name: gi|316915423|gb|ADCN01000039.1| Bifidobacterium sp. 12_1_47BFAA cont1.39, whole genome shotgun sequence Length of sequence - 5208 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 9, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 32 - 487 427 ## COG2826 Transposase and inactivated derivatives, IS30 family + Term 602 - 653 1.3 - Term 271 - 297 0.1 2 2 Tu 1 . - CDS 534 - 749 173 ## Blon_1425 60 kDa inner membrane insertion protein 3 3 Tu 1 . + CDS 900 - 1145 94 ## gi|291516914|emb|CBK70530.1| hypothetical protein - Term 956 - 989 1.0 4 4 Tu 1 . - CDS 1174 - 1395 275 ## COG0706 Preprotein translocase subunit YidC + Prom 1181 - 1240 2.5 5 5 Op 1 . + CDS 1403 - 1558 228 ## BLJ_0977 hypothetical protein 6 5 Op 2 . + CDS 1590 - 2222 967 ## COG0477 Permeases of the major facilitator superfamily - Term 2033 - 2078 3.5 7 6 Tu 1 . - CDS 2141 - 2353 159 ## - Prom 2430 - 2489 1.6 8 7 Tu 1 . + CDS 2453 - 4117 2079 ## COG0833 Amino acid transporters - Term 4058 - 4097 8.3 9 8 Op 1 . - CDS 4321 - 4659 332 ## COG0681 Signal peptidase I 10 8 Op 2 . - CDS 4659 - 5042 75 ## gi|62860892|gb|AAY16485.1| site-specific recombinase 11 9 Tu 1 . + CDS 4842 - 5208 443 ## BLD_0058 IS30 family transposase Predicted protein(s) >gi|316915423|gb|ADCN01000039.1| GENE 1 32 - 487 427 151 aa, chain + ## HITS:1 COG:tra8_g2 KEGG:ns NR:ns ## COG: tra8_g2 COG2826 # Protein_GI_number: 16129365 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 3 134 249 380 383 97 38.0 6e-21 MNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDE ALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLL GYKTPNEVWDEEMAKLQSKQADPKPAVALTS >gi|316915423|gb|ADCN01000039.1| GENE 2 534 - 749 173 71 aa, chain - ## HITS:1 COG:no KEGG:Blon_1425 NR:ns ## KEGG: Blon_1425 # Name: not_defined # Def: 60 kDa inner membrane insertion protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 9 71 234 296 296 89 96.0 5e-17 MVSGARIRGGERKAERDHERENRHRAASGLPSLEEERAAAAREEAHVRREREKSVASRNR RQRKNVQLAKR >gi|316915423|gb|ADCN01000039.1| GENE 3 900 - 1145 94 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291516914|emb|CBK70530.1| ## NR: gi|291516914|emb|CBK70530.1| hypothetical protein [Bifidobacterium longum subsp. longum F8] # 1 81 19 99 99 130 98.0 2e-29 MASFGVLRWMSSHCIANNIRHINATATPMTTCDCGETTVPNESAMRTTNMDDDSMSPAMT RSMPLNGSAFPAALAGRDCSV >gi|316915423|gb|ADCN01000039.1| GENE 4 1174 - 1395 275 73 aa, chain - ## HITS:1 COG:DR2149 KEGG:ns NR:ns ## COG: DR2149 COG0706 # Protein_GI_number: 15807143 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Deinococcus radiodurans # 1 70 218 287 428 60 40.0 6e-10 MCLVLIIRICLLPLFFSQMRATQRMQVLQPQIQRIQRKYAARKDPRSKEAMQREIMALQQ RHNANPLGSYLLR >gi|316915423|gb|ADCN01000039.1| GENE 5 1403 - 1558 228 51 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0977 NR:ns ## KEGG: BLJ_0977 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 51 1 51 51 76 100.0 3e-13 MPKLCGTDSFYGGGMVTGQPIGTMIGSRMINNAQAGFIIGAVIMGFRIRGA >gi|316915423|gb|ADCN01000039.1| GENE 6 1590 - 2222 967 210 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 25 210 228 418 418 76 27.0 4e-14 MERTKMTLKDLAVSFHFPKFSTSRDFYKAFGCRVCMLLSYQMISVYQLYIVEDYVHQTKT EAAGTIATMSIITMVVSLTASLISGPISDKMHTHKVPVIIASLLFAIGTAMPWIMPSVTG MYLYAGIAGFGYGVYSAIDQALNVDVLPNKEEAGKGLGILNLATTLGQAVGPTITSVVKT TTGTYTPAFAISIVMAVCAAVFVLRIQKVK >gi|316915423|gb|ADCN01000039.1| GENE 7 2141 - 2353 159 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALFYRYSAVFNQWLLWHQPLETEVDVPQSQNQPLETEIGTRSGYFTFWIRSTNTAAHTA MTMEMANAGV >gi|316915423|gb|ADCN01000039.1| GENE 8 2453 - 4117 2079 554 aa, chain + ## HITS:1 COG:BS_ybgF KEGG:ns NR:ns ## COG: BS_ybgF COG0833 # Protein_GI_number: 16077309 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Bacillus subtilis # 86 544 10 465 470 547 61.0 1e-155 MQRSYILGAGILFRAVTTTPMERTHGKERNMSQPDTDTAAQSPSSQQEPQIQTDGRRSHS EQMNQPAQTSQSESSHDGKDEHALHTNLKRGMESRHLQMISLGGVIGTGLFLSSGYTIQQ AGPIGTILAYSIGALIVYLVMLTLGELSVAMPVTGSFHVYAEKFIGPGTGFVIAIQYWLT WTVALGSEFTAAGLLMQRWFPDSPTWVWSAACIILIFTLNALSVRLFAEAEFWFASIKVF AICAFIVIGSLAIFGVIPVAGYQHAPMFVNLIKDGVFPNGFMPVFATILTVNFAFSGTEL IGVTAGETRDPQTAVPKAIHTTLWRLVLFFIGSITVMCALIPWRKAGVGESPFVLVFNGI GIPYAGDIMNFVVLTAVLSASNSGLYASTRMVWSLGNEGMIPRWFAKTNRRGVPMLALCA AMAGGLLALLSSVIAASTVYLVLVALSGLSAVVVWIAIAYCQIVFRRRWLESGHSTSELK YRTPGYPYVSWAAFILCTASFVLVIFDVEQRFALVAELVFIVACYGAYFLQQWVRKRKKA TEADDLDTLWVARD >gi|316915423|gb|ADCN01000039.1| GENE 9 4321 - 4659 332 112 aa, chain - ## HITS:1 COG:Cgl1987 KEGG:ns NR:ns ## COG: Cgl1987 COG0681 # Protein_GI_number: 19553237 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Corynebacterium glutamicum # 10 109 143 253 262 78 39.0 3e-15 MSIIDSNRYLIKRVIGLPGDTVACKGSGESITVNGKPIDESAYLKSGVNPSDSPFSVTVT DGNVFVLGDNRSNSRDSRYHLDDGNNGLVPYDDIQGVALFRFWPFTRIGILN >gi|316915423|gb|ADCN01000039.1| GENE 10 4659 - 5042 75 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|62860892|gb|AAY16485.1| ## NR: gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve] # 45 114 3 72 229 99 78.0 4e-20 MEGLGFVHGGTIPVHQGFLVPSRGARPAVAPRLAGAFRDADRVRGLGEVHAFLVQQAHVL GASRLAHQLPRRIFDAVERPTVFPATVFVSVASGHLTLLAVGQVLQRSLEPAKIPQTGWR GSSFPPI >gi|316915423|gb|ADCN01000039.1| GENE 11 4842 - 5208 443 122 aa, chain + ## HITS:1 COG:no KEGG:BLD_0058 NR:ns ## KEGG: BLD_0058 # Name: not_defined # Def: IS30 family transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 122 29 150 423 225 100.0 3e-58 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQIADRLRLGDSIRAIARLLGRDPGTVSREVERNRNPESGGYEP YR Prediction of potential genes in microbial genomes Time: Fri May 13 13:20:05 2011 Seq name: gi|316915387|gb|ADCN01000040.1| Bifidobacterium sp. 12_1_47BFAA cont1.40, whole genome shotgun sequence Length of sequence - 37040 bp Number of predicted genes - 47, with homology - 38 Number of transcription units - 32, operones - 9 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 353 469 ## COG2826 Transposase and inactivated derivatives, IS30 family - Term 317 - 345 -0.9 2 2 Tu 1 . - CDS 392 - 697 329 ## BLD_0509 signal peptidase I - Term 708 - 751 2.2 3 3 Tu 1 . - CDS 775 - 1203 430 ## BLD_0510 hypothetical protein + Prom 1440 - 1499 1.9 4 4 Tu 1 . + CDS 1524 - 2549 1363 ## BLD_0511 hypothetical protein - Term 2495 - 2540 1.1 5 5 Tu 1 . - CDS 2557 - 2652 92 ## BLD_0512 hypothetical protein 6 6 Op 1 . - CDS 3281 - 3808 21 ## COG0693 Putative intracellular protease/amidase 7 6 Op 2 . - CDS 3840 - 3983 160 ## BLD_0515 hypothetical protein + Prom 3761 - 3820 3.7 8 7 Op 1 . + CDS 3967 - 4089 119 ## 9 7 Op 2 . + CDS 4160 - 4471 482 ## BL0782 hypothetical protein 10 8 Op 1 . + CDS 4631 - 5008 349 ## Blon_1435 death-on-curing protein 11 8 Op 2 . + CDS 4983 - 5123 127 ## Blon_1435 death-on-curing protein 12 9 Tu 1 . + CDS 5319 - 5519 239 ## BLJ_0964 putative oxidoreductase 13 10 Tu 1 . + CDS 5622 - 5972 420 ## COG3189 Uncharacterized conserved protein 14 11 Tu 1 . - CDS 5981 - 6820 212 ## COG1061 DNA or RNA helicases of superfamily II - Prom 6885 - 6944 2.3 + Prom 6599 - 6658 2.4 15 12 Tu 1 . + CDS 6815 - 6898 63 ## + Prom 7475 - 7534 3.2 16 13 Op 1 . + CDS 7643 - 8833 1850 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 17 13 Op 2 . + CDS 8873 - 10636 2049 ## COG0063 Predicted sugar kinase + Prom 10640 - 10699 2.8 18 14 Op 1 . + CDS 10738 - 11367 948 ## COG1011 Predicted hydrolase (HAD superfamily) 19 14 Op 2 . + CDS 11469 - 12392 1552 ## COG0583 Transcriptional regulator + Term 12469 - 12511 13.1 - Term 12456 - 12498 9.3 20 15 Tu 1 . - CDS 12547 - 13668 922 ## BL0787 hypothetical protein - Prom 13744 - 13803 2.8 21 16 Tu 1 . + CDS 13688 - 14026 71 ## gi|239622115|ref|ZP_04665146.1| predicted protein + Term 14102 - 14131 2.8 - Term 14089 - 14119 3.0 22 17 Op 1 1/0.000 - CDS 14144 - 14839 1441 ## COG0461 Orotate phosphoribosyltransferase 23 17 Op 2 13/0.000 - CDS 14848 - 15819 1300 ## COG0167 Dihydroorotate dehydrogenase 24 17 Op 3 . - CDS 15822 - 16646 1107 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 25 17 Op 4 . - CDS 16666 - 16776 57 ## 26 17 Op 5 . - CDS 16782 - 17735 1443 ## COG0284 Orotidine-5'-phosphate decarboxylase 27 17 Op 6 . - CDS 17753 - 19249 1716 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 28 17 Op 7 19/0.000 - CDS 19246 - 19665 696 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 29 17 Op 8 . - CDS 19665 - 20627 1482 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 20703 - 20762 1.5 30 18 Op 1 . - CDS 20769 - 23999 4405 ## COG1391 Glutamine synthetase adenylyltransferase - Term 24004 - 24044 6.8 31 18 Op 2 . - CDS 24055 - 25008 1051 ## COG3049 Penicillin V acylase and related amidases - Prom 25042 - 25101 1.8 - Term 25087 - 25135 13.4 32 19 Op 1 9/0.000 - CDS 25142 - 25996 1174 ## COG0685 5,10-methylenetetrahydrofolate reductase - Term 26005 - 26045 11.2 33 19 Op 2 . - CDS 26055 - 28355 3838 ## COG0620 Methionine synthase II (cobalamin-independent) 34 20 Tu 1 . + CDS 28366 - 28488 66 ## 35 21 Tu 1 . - CDS 28466 - 29023 768 ## COG2062 Phosphohistidine phosphatase SixA 36 22 Tu 1 . - CDS 29129 - 30199 1479 ## COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferases + Prom 30187 - 30246 2.1 37 23 Tu 1 . + CDS 30276 - 30914 385 ## BLD_0541 putative esterase - Term 31017 - 31061 0.6 38 24 Tu 1 . - CDS 31082 - 31462 190 ## BLD_0542 hypothetical protein 39 25 Tu 1 . + CDS 31628 - 31936 104 ## BLD_0543 hypothetical protein 40 26 Tu 1 . - CDS 32061 - 33020 1127 ## COG4989 Predicted oxidoreductase + Prom 33192 - 33251 3.4 41 27 Tu 1 . + CDS 33277 - 34212 954 ## COG0657 Esterase/lipase + Term 34270 - 34311 5.9 42 28 Tu 1 . - CDS 34193 - 34426 308 ## + Prom 34236 - 34295 1.7 43 29 Tu 1 . + CDS 34451 - 34513 63 ## + Term 34597 - 34627 2.1 44 30 Tu 1 . - CDS 34631 - 34744 109 ## 45 31 Tu 1 . - CDS 34955 - 36523 1407 ## COG2801 Transposase and inactivated derivatives 46 32 Op 1 . + CDS 36648 - 36746 87 ## + Prom 36750 - 36809 2.3 47 32 Op 2 . + CDS 36846 - 36977 164 ## Predicted protein(s) >gi|316915387|gb|ADCN01000040.1| GENE 1 3 - 353 469 116 aa, chain + ## HITS:1 COG:tra8_g1 KEGG:ns NR:ns ## COG: tra8_g1 COG2826 # Protein_GI_number: 16128241 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli K12 # 1 111 267 376 383 136 61.0 8e-33 DAEHVQQAIIDKMQHLPKLLRNSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTN ENTNGLLRQYFPKGTDLSVYPEDYLDAVAEELNDRPRKTLGFMKPSEKIIELLDAA >gi|316915387|gb|ADCN01000040.1| GENE 2 392 - 697 329 101 aa, chain - ## HITS:1 COG:no KEGG:BLD_0509 NR:ns ## KEGG: BLD_0509 # Name: lepB1 # Def: signal peptidase I # Organism: B.longum_DJO10A # Pathway: Protein export [PATH:blj03060] # 1 89 1 89 216 179 100.0 4e-44 MVGRHSKKARGQSRRYARKPSVWSEIRGYLLTVIAVMLVVLLGRTFVFNVYVIPSRSMED TLQIGDRVFASRLTPRLFTLHRGDIIVFKGQILVVVATPEV >gi|316915387|gb|ADCN01000040.1| GENE 3 775 - 1203 430 142 aa, chain - ## HITS:1 COG:no KEGG:BLD_0510 NR:ns ## KEGG: BLD_0510 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 142 1 142 142 264 100.0 7e-70 MTPIELSTRRRVTGLTSDEFARLFVSLQREVDGEAAHWSATDVESWELVGPPVTAEQHLI DTFAAANEFVATLADRLYHTIMPVTEESVITAYADDLTFWASHPDLGGVPCALWNIAALQ AAEWARKETGIACELDVREPLV >gi|316915387|gb|ADCN01000040.1| GENE 4 1524 - 2549 1363 341 aa, chain + ## HITS:1 COG:no KEGG:BLD_0511 NR:ns ## KEGG: BLD_0511 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 341 1 341 341 596 99.0 1e-169 MTRKQSQQHDAQRKPSWRVRWKTMSRAVGMEIREHKSSFAVYVVLRMLVLATAILQFFNG DYENVLLCILTLLLLLAPAFIQVQFRIELPSVLEVIVLVFVFSAEILGEISSFYEIFPFW DTVLHTMNGFLAAAIGFSLVDLLNRSDRVKFELSPLYLAIVSFCFSMTIGVIWEFFEFGM DQLFGFDMQKDAIVHSISSVMLDPTHTNHAIRINDITQVTVNGQDLGLGGYLDIGLIDTM EDLVVNFIGAVVFSVFGFLYVKNRGKKDSIISRFVPRRKSADRDYLRLVIDGGSAADAKA KAGGANADDSANASAAGTDSADAAGAKAGNADAAPTVIAKP >gi|316915387|gb|ADCN01000040.1| GENE 5 2557 - 2652 92 31 aa, chain - ## HITS:1 COG:no KEGG:BLD_0512 NR:ns ## KEGG: BLD_0512 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 31 47 77 77 62 100.0 3e-09 MAQRQRENDYFAFKKHMTVTGHYRFDASKVL >gi|316915387|gb|ADCN01000040.1| GENE 6 3281 - 3808 21 175 aa, chain - ## HITS:1 COG:SMa1968 KEGG:ns NR:ns ## COG: SMa1968 COG0693 # Protein_GI_number: 16263533 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Sinorhizobium meliloti # 2 135 15 149 242 103 42.0 1e-22 MSENNDAKHVLLVLISHSDLGGVRPTGFYVDEAAHPWQVFRRMGFTVGLASIAGGVPPQA GRHPGDPVQEQFLHDADISRQLVNTRALAQVNANRYDAVLFVGGHGVMWDFPNNSVVNAV GRNIWERGGIVPWACGIGGYDVVGWQLSDCRQAGHRIHQRRRAKSRALSVAAAGE >gi|316915387|gb|ADCN01000040.1| GENE 7 3840 - 3983 160 47 aa, chain - ## HITS:1 COG:no KEGG:BLD_0515 NR:ns ## KEGG: BLD_0515 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 47 8 54 54 86 100.0 3e-16 MMGISIMQKPMPRIEKSYWTKPLGLGHDNWAIARLIRSTDVPDLRWR >gi|316915387|gb|ADCN01000040.1| GENE 8 3967 - 4089 119 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEMPIISIIPVPITSVIANTSSGKSYKDARYSNRTNVRLS >gi|316915387|gb|ADCN01000040.1| GENE 9 4160 - 4471 482 103 aa, chain + ## HITS:1 COG:no KEGG:BL0782 NR:ns ## KEGG: BL0782 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 103 1 103 229 203 97.0 1e-51 MTGEELKQQIALYESADHTVHLDVKVDEDTVWLNRKQLALLFGRDIKTIGKHVGNALREE LNGFSVVTEFATTASDGKTYQVEHYNLDMILSVGYRVKSKEGI >gi|316915387|gb|ADCN01000040.1| GENE 10 4631 - 5008 349 125 aa, chain + ## HITS:1 COG:no KEGG:Blon_1435 NR:ns ## KEGG: Blon_1435 # Name: not_defined # Def: death-on-curing protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 120 21 140 183 238 94.0 6e-62 MPSLVLLNDYDTGNVPIPKGDESQWVLTYEDAMLFIRSMPFYTQSDLFGRERNGSFQGIV AGLYQTFGGEELYRSTQEKAANLLYQVVKDHPFSDGNKRCAAALFVYFLNGNSILGDDDS PACGG >gi|316915387|gb|ADCN01000040.1| GENE 11 4983 - 5123 127 46 aa, chain + ## HITS:1 COG:no KEGG:Blon_1435 NR:ns ## KEGG: Blon_1435 # Name: not_defined # Def: death-on-curing protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 4 46 141 183 183 77 95.0 1e-13 MTPLLVEGNALAAMTLMIALSAPAGKDTMIALVENFLIRHESQEIN >gi|316915387|gb|ADCN01000040.1| GENE 12 5319 - 5519 239 66 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0964 NR:ns ## KEGG: BLJ_0964 # Name: not_defined # Def: putative oxidoreductase # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 66 44 109 109 131 100.0 8e-30 MKLLARAIYAIVGVSVEEAIAPITHLIDNPPHTALSAFIKTKPVDLTMNTFDRGKAVRLD DITKSC >gi|316915387|gb|ADCN01000040.1| GENE 13 5622 - 5972 420 116 aa, chain + ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 6 115 4 113 116 124 55.0 6e-29 MGRMGIAIKRIYEEPTASDGYRVLVDRLWPRGMTKERAALDLWLKDVAPSPLLRKWFGHD PAKFAEFRMRYIAELDANAAVDNLRHICAEHPDVTLLYAAKDPHINHALVLRDYLN >gi|316915387|gb|ADCN01000040.1| GENE 14 5981 - 6820 212 279 aa, chain - ## HITS:1 COG:SP0575 KEGG:ns NR:ns ## COG: SP0575 COG1061 # Protein_GI_number: 15900485 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Streptococcus pneumoniae TIGR4 # 10 275 334 548 548 102 28.0 8e-22 MHDLSLVPNNESLTIVATGSYIGEGFDQKRFDTLLLAAPVSFEGTLSQYVGRLHRENDGK TEVRVYDYIDVTVPLSAVMYRKRLKAYANQGYSVNPDHTEKMDMLSAKAEALRACMTTAT QGEDAADALLDTRSDGLFEGSIVTATNYAEILRKDIAGCARSLIISAEYVSQQGLSAIDD ELLRLADRKALIEVYVRLPATAAVATRTRIERNINRLRAIGRIVRTVESCSDFAIIDDGL IWFGGIPLLGNPRSDDCALRFKDTKIGENLADGLKRRSS >gi|316915387|gb|ADCN01000040.1| GENE 15 6815 - 6898 63 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHFFGYSLFAVGRAWVSVSGSISCQKK >gi|316915387|gb|ADCN01000040.1| GENE 16 7643 - 8833 1850 396 aa, chain + ## HITS:1 COG:CAC2832 KEGG:ns NR:ns ## COG: CAC2832 COG0436 # Protein_GI_number: 15896087 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Clostridium acetobutylicum # 1 392 1 391 393 393 46.0 1e-109 MINEEYKAMLGGKSVIRELSEYATSRGAEIGYQNVFDYSLGNPSVPAPKSFTDAMVDLYE NGDPVAIHGYSPSLGIPSVKDAIAENLNERFGMAYTGNHIFPTTGAAGALSHAMRAVTKP GDEIITFAPYFPEYQPYVKGAGAKLTIVPADTENFQINFDAFEAALNPNVQVVLINTPNN PSGAVYSADTLKRLAAILTAKQVEYGHDIFLISDEPYREIVFDGATQPYPASFYANSLTC YSWSKSLSLPGERIGYVAVNPTATDADLLVPMMGQISRGTGHNCPPSSIQLGVAKVIDQT ADLNVYETNMNLLYDALTGIGFDVVRPGGTFYIFPKALEDDAVAFCMKAKEYDLILVPSD SFGVPGYFRMAYCIDTEKVKRSIPVFEKFAHEVYGL >gi|316915387|gb|ADCN01000040.1| GENE 17 8873 - 10636 2049 587 aa, chain + ## HITS:1 COG:Cgl0579_2 KEGG:ns NR:ns ## COG: Cgl0579_2 COG0063 # Protein_GI_number: 19551829 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Corynebacterium glutamicum # 281 544 1 259 287 106 32.0 2e-22 MEYTEDADRRELLLHSAYDSDTVRAMERPLLDKGVPLMRMAAQAAAHMAAGMLDDEDLAL EDTSIVLLAGAGDNGGDGLFAAAALAQEGANVTAIAVGRSLHEAGFASFVRAGGKVLVLD PAADIPGCASGFSAGEAGERLQTAIAVARKSHLIIDAMTGIGIQGSLRGIPAALASALGL DGEAPDEPALPNRESSGDFPLVLAVDTPSGVGVNDGSLPGPYIPATVTVTFGAMKPCAVL PPATFACGRIELLDFGFDIDDKDPDVEVVDNSFASDAVRLPRFEDSKYSRGVVGLVTGSQ RYPGAAVLTASAAARANTGMVRYLGPERAQNMVLAALPEAVIGKGHVQSWVVGSGVPEAS VEGTDGDMQRDTIAALLKHYALGSEDENKDAYDMPPIVVDAGALDLLPERVPGQVVITPH AGEMAKLLNRFETAASTAEHADSHEPYTADDVRLNPLASAKRAHELTGATVLLKGAVTIV VDEDHVYASGSAPAWLGTAGAGDVLAGLTGALLAQQDDVATTGETVASAAYLHGLAAAIA SESEQQGWQEPELIGREHRQRFMTLGHPIVAGDVAHAIPEAIADVIA >gi|316915387|gb|ADCN01000040.1| GENE 18 10738 - 11367 948 209 aa, chain + ## HITS:1 COG:SMc00081 KEGG:ns NR:ns ## COG: SMc00081 COG1011 # Protein_GI_number: 15964680 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Sinorhizobium meliloti # 1 208 1 204 218 73 27.0 2e-13 MANSPITDVIFDFCGVLLDWNTRACLEGRFPDEIVERICADDDPCGFFRYEDRMDTGEDF ADIYPDVVREQGQELADIFKFYIGHYADALPRTLPGMVELLADLKAHGYGVWGLTNWSHE TFHLAFEKYPRLEQLLQGTVVSGVEKMHKPNADIYELALTRFGLTAERCVFFDDTAKNIV GANEVGIHGILFENALQARESLAELGVRL >gi|316915387|gb|ADCN01000040.1| GENE 19 11469 - 12392 1552 307 aa, chain + ## HITS:1 COG:SP0676 KEGG:ns NR:ns ## COG: SP0676 COG0583 # Protein_GI_number: 15900577 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Streptococcus pneumoniae TIGR4 # 1 294 21 314 322 301 49.0 1e-81 MTLLQLKYIVKIVECGSMNEASHALYVSQPALSSSVKELENELGIEIFTRSSQGIALTVD GAEFLTYARQVLDQADLLEERYKHAKPRKQLCQVSTQHYMFAVEAFVEMINSIKSDEYEF TIRETRTRDIINQVANMQSEIGIIYLSDFNKDVIGKLLREKHLEFHPLFRAPLHVFISRN NPLAAKKVITMEDLKPYPFIQYEQGEEGSFYFYEEAVWPEYSPKQINVTDRATILNFIIG LNGYTVCTGIDNGDLNNEKIVTVPLDTDETMLVGWITNERSKLSKAAETYLDKLKSVVSD HGYKLID >gi|316915387|gb|ADCN01000040.1| GENE 20 12547 - 13668 922 373 aa, chain - ## HITS:1 COG:no KEGG:BL0787 NR:ns ## KEGG: BL0787 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 373 1 373 373 754 100.0 0 MGNITDDIRQHFDTFAELPFTEADSLALSQLAYARMPDNVPRYHENAETADGMIATVPIH DLLRAECYDDMFGKVWSPSMNVDLLRAMSESPRWRNLRVGAYVDEFDAETTKQFSACVFE LGNGTLYVAFRGTDSSIVGWKEDFMMAFRRPVASQEAAARYLTELAGHWAGPIMVGGHSK GGNLAVYAAANVPSEIQERITVVYSHDGPGFDEAFFDEDGYVRIASKIHKSVPGSSIIGM LFETREHVEDGYTVVSSDGASIMQHFALHWQVDHGQFVQADGLTSSAQYLARTINGWMAK YDDEHRRKFIENLFAIFEAGGYDTFGDLTSHLTQSLPIMLAAARNIDVEDRDVMIEVLKG FAATAAASVILAK >gi|316915387|gb|ADCN01000040.1| GENE 21 13688 - 14026 71 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622115|ref|ZP_04665146.1| ## NR: gi|239622115|ref|ZP_04665146.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 112 11 122 122 210 100.0 2e-53 MQRTYGNSTPSGFSSQASRSQSLEPYLAFKGADLAFWRHLSPFQEAVHPSYPEYERRHPN VIPPFSCCFYLGISISAVFFITLRQLVRFAVQMMLDAEVTAYPHERKQPYIN >gi|316915387|gb|ADCN01000040.1| GENE 22 14144 - 14839 1441 231 aa, chain - ## HITS:1 COG:CAC0027 KEGG:ns NR:ns ## COG: CAC0027 COG0461 # Protein_GI_number: 15893325 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Clostridium acetobutylicum # 3 230 2 222 224 186 42.0 2e-47 MAETLAHRFTEFLLESNALKFGDFTLKSGRKSPYFINAGAFDDGKKIAALGAFYAEKISQ AIVHNTIPRNIDTVFGPAYKGIPLAVSTAIALTAGHNMTVGYTFDRKEKKDHGDGGWMVG TPLTDGMKVLLVDDVMTAGTAVREVIPKLKAEANVEVVGLVLSVDRMEKTKDSDMSAVKA VEAEFGFPVLSIANVREIFDAAAKMKNPDGTPLLSHDIQQRAAAYLEEYGA >gi|316915387|gb|ADCN01000040.1| GENE 23 14848 - 15819 1300 323 aa, chain - ## HITS:1 COG:aq_046 KEGG:ns NR:ns ## COG: aq_046 COG0167 # Protein_GI_number: 15605646 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Aquifex aeolicus # 31 309 9 290 306 262 47.0 7e-70 MSANNQSAQGGDNHINLYEPHVWKHHTKVAGLEWKNPVGTASGTFQYAAVRWFYDVSQLG AVCTKGASPVPWEGNPSPRTAESPAANINAVGLQNPGIDHYLAEDLPKLKAAGAFVISNV AGHCDDDYAAVVEKLADSDADMLEINVSCPNVSAGGMSVGTDPVALANLMDRLRPMTDKP MIVKLTPNVTDITVPARAAVEHGADALSMINTLKGMRINIRTGKPIIANVTGGVSGPAVL PVGLAAVYRVRTALPEIPIIGLGGIDSGEKALEYLYAGANAVEVGAAALFDPVAPLRVAR ELDDLLDSRPELAAKLAAGQTWR >gi|316915387|gb|ADCN01000040.1| GENE 24 15822 - 16646 1107 274 aa, chain - ## HITS:1 COG:BS_pyrDII KEGG:ns NR:ns ## COG: BS_pyrDII COG0543 # Protein_GI_number: 16078617 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Bacillus subtilis # 33 271 13 255 256 139 35.0 7e-33 MTTFTPTHDVVTEATAAGFFPPRHNVEITQVTELTDRVMRLTFRDPFIASHAKPAQFVNL FTHDDFMLMPRPFGVSEVDGDEVSVIFAVVGHGTEQLAGLQAGDTVDVLGPLGRGFNLKE DANYILVGGGLGVPPLIYAAQKLAEHDASFATAVFGYRNDHFAEEYVSRYADWSWSIDDA EGNVVDLLNKLEQGDDLKAYDRKPIILSCGPLPMMKAVADWAAERGIPAQLSMEQRMGCG YGTCVLCTIDTVDGRLKVCSDGPVFTREQLGWGK >gi|316915387|gb|ADCN01000040.1| GENE 25 16666 - 16776 57 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGCGLYVSVGWKPEPSVFNYLSVNLRLTAPLIGGA >gi|316915387|gb|ADCN01000040.1| GENE 26 16782 - 17735 1443 317 aa, chain - ## HITS:1 COG:CAC2652 KEGG:ns NR:ns ## COG: CAC2652 COG0284 # Protein_GI_number: 15895910 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Clostridium acetobutylicum # 1 312 3 283 286 203 38.0 3e-52 MDRLIEAIDNTQNPSVVGLDPTEALVPPQVVASFADEVRDSVESPEEVESAQLAVAYFEY NRTIIDAIADIVPAVKPQIAMYEALGPAGVDIYTMTCEYAAQQGLYVLGDIKRGDIGSTA AAYAHHLNGVGDFDPWHEDAVTVNPYLGTDGITPFVEAAAEADKDIFVLVRTSNPSSSEL QMLDLADGTKVYEHVADLVEGWGAETIGSHGYSRVGAVVGATHPEEGKALRERMPHTFFL VPGYGAQGGTAADVAGMFDKQGSGAIVNSSRGIIGAWKKSGKYSESMTADEALDLVASSA RQAALDMRDNLRVAVYR >gi|316915387|gb|ADCN01000040.1| GENE 27 17753 - 19249 1716 498 aa, chain - ## HITS:1 COG:aq_806 KEGG:ns NR:ns ## COG: aq_806 COG0044 # Protein_GI_number: 15606174 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Aquifex aeolicus # 35 495 40 420 422 215 32.0 1e-55 MSITLRNIKVWNTGEVIDLVVPGTAAAYFADTSAVADGADIDATGLTVAPGFEDPHVHFR DPGQTYKESMVSGCRASASGGYTNVLIMPNTLPALDGQTVSGPEATGAKEVLDAGFDNVI DFLQQYDTAHDVQLPVRYDLCVCASKDRAGHEASDVADWLKYVPGFEDDAKTPAMLTHPI TAISDDGSAVTPEILDQVLENVKASDLYLIEHCEHHDTGAVNEGPVSRELGVPGIPEDTE LKIVARDIEAARRTGVHVHFQHVSTAISFEAIRRAKAEGLPITCETAPHYLALSDEALLK YGTLAKMNPPLRSEADRKATIAAIADGTVDLLATDHAPHTLAEKELGFLEAPNGIIGLEC AYGVCHKVLVDGGFISDERLIELMSVGPAELMGHVPTDVAALVEDYAEPAPTGDDPDGVI AGESDAQPQREGVNRLLDLSRVDDADNVDLVVLNAAEEWTVDPEQFHSKARNTPFGGWQV TGRPLATIIGSQLMFSRL >gi|316915387|gb|ADCN01000040.1| GENE 28 19246 - 19665 696 139 aa, chain - ## HITS:1 COG:CAC2653 KEGG:ns NR:ns ## COG: CAC2653 COG1781 # Protein_GI_number: 15895911 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Clostridium acetobutylicum # 1 135 2 136 146 127 48.0 5e-30 MEVTSIQNGIIIDHVPAGTSLKVLEYLKIDPAKTKLALIMNADSKRYGSKDIIKIEDDKD IDLDVLGFVARQATVDVVRGGKIVEKKQPNLPEHIVGVISCVNPRCVTTAEPGIKQMFHL VHSERLEYRCDYCDEEAKL >gi|316915387|gb|ADCN01000040.1| GENE 29 19665 - 20627 1482 320 aa, chain - ## HITS:1 COG:CAC2654 KEGG:ns NR:ns ## COG: CAC2654 COG0540 # Protein_GI_number: 15895912 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Clostridium acetobutylicum # 3 304 4 305 307 362 57.0 1e-100 MVGKSVVTLDGLSTNQILDLLHKAEYIDSHRKEIAHTCDGRVLATLFYEPSTRTRLSFET AMLRLGGKVIGFAGAQLASVTKGESIADTLKTVSNYVDVVAIRHPKEGAALVASRAASVP VINAGDGGHMHPTQTLADLATLQSRFGRITDLTVGLCGDLTFGRTVHSLIETLCRFGNVR FVLISPDELKTPQYVIDRINATDSCSYVEVRDLASVIGDLDVLYMTRVQKERFFNEDDYL RLRDTYILDEEKLQLAKPSMAVLHPLPRVNEIAVDVDDDPRAAYFEQVKNGMLVRMALES TVVGDELPGYEPLNPKEVQA >gi|316915387|gb|ADCN01000040.1| GENE 30 20769 - 23999 4405 1076 aa, chain - ## HITS:1 COG:Cgl2179 KEGG:ns NR:ns ## COG: Cgl2179 COG1391 # Protein_GI_number: 19553429 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Corynebacterium glutamicum # 43 1031 48 1036 1045 582 36.0 1e-165 MESSIFKPSSMDLIRAGLQDLDKARALFDQLKADDIPDERCAELLSALAHACDPDMALSN FVDIVNAMQSSQRDLEHVIPDNDALKRLVTVLGVSDAMGKFMRFKPQLVEAAAVDNCNSH LFNHAQRRARLLKAVGADPDEPAMPVASKDLAEAATALRSSYRNQLAAIIAQDAVADDPT SIQPTISRELSDLADAALEGALAIARHETEGSEHVRFTIIGMGKLGAQELNYVSDVDLIY VVEPADKDVDHQTLIRVGTKMGTMLQRVCQSAIMGVAEQPLWQIDGGLRPEGKDGALVRV LSSHKNYYEQWAENWEFQALLKARPVAGDPDLGQAYMDMTRPFVWSASKRKNFVYDCQKM RKRVEDLIPAPLKNREIKLGRGGLRDVEFTVQMLQLVHGRTDESLRTSNTLDSLQRLSEG GYVSRKQAVRMSQDYRFERVMEHRQQIWSLKRTHLFPDLGRASVGGLEKKRDIDVDELNQ NQELRRLARAFGLHPEELVDKYDDTRREVRHLHLDIYYRPMLPVNAQMENDQIVLSVEAA QERFESIGFGDPDAAIRHVQALTAGVGRAAKINRIILPAVLQWLGEGQNPDMGLLNWRKL EENFGTESGYLGFLRDSTSAAQRLCHILSNSRFLGDALNKSVESISWLGDDDNLQARTRE ALDVQTGSALERFGSNINEFATSMRAMRRHEIERIGLSWMSGVISDSDSLKAMTDVYDAI IDASLTWAVRHQIAEFGVETAPAGITVIAMGRYGGREVNFSSDADAILIYRPADDADDGQ ANAFAKKVVEDLRNILQGPTTLEPKIELDLDLRPEGKNGPLVRSYASCEEYYESWASTWE RQALLRARYAAGDAELARDFLINIADPLRYPTTELTEAELQNIRKLKARMEAERLPRGVR RERHLKLGKGGLSDVEWTVQLMQLQHAGDIKDLRVNGTLEALDVLEAKKLISAIDAIQLR KAWTLCTAARNGSYLWSGRANQADILPDDIYSLGGIAVYLGYGAHCGQHFENDLLAVMRK CRDVCQRLFYGKTEGEAAAATTATASAATQQPQTAPRPRMHVIAPRLERNRRRAQR >gi|316915387|gb|ADCN01000040.1| GENE 31 24055 - 25008 1051 317 aa, chain - ## HITS:1 COG:BS_yxeI KEGG:ns NR:ns ## COG: BS_yxeI COG3049 # Protein_GI_number: 16081005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Bacillus subtilis # 1 311 1 312 328 162 30.0 5e-40 MCTGVRFSDDEGNTYFGRNLDWSFSYGETILVTPRGYHYDTVFGAGGKAKPNAVIGVGVV MADRPMYFDCANEHGLAIAGLNFPGYASFVHEPVEGTENVATFEFPLWVARNFDSVDEVE EALRNVTLVSQIVPGQQESLLHWFIGDGKRSIVVEQMADGMHVHHDDVDVLTNQPTFDFH MENLRNYMCVSNEMAEPTSWGKASLTAWGAGVGMHGIPGDVSSPSRFVRVAYTNAHYPQQ NDEAANVSRLFHTLGSVQMVDGMAKMGDGQFERTLFTSGYSSKTNTYYMNTYDDPAIRSY AMADYDMDSSELISVAR >gi|316915387|gb|ADCN01000040.1| GENE 32 25142 - 25996 1174 284 aa, chain - ## HITS:1 COG:Cj1202 KEGG:ns NR:ns ## COG: Cj1202 COG0685 # Protein_GI_number: 15792526 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Campylobacter jejuni # 6 280 4 277 282 228 39.0 1e-59 MHSPMFTLEVFPPKRNAPVGTIYDTLDGLEGLNPDFISVTYGHGTHSDRTATARIAHTIS KEYGIPAVAHLTALYSDKAKIDEALDMFEEAGVSAVLALRGDYIDGEQLVGEFNHASDLV SYIRSVKPDFKVFGACYPEGHYQADSLDQDIENLKIKVDAGVTHLISQLFYDNEDFYRFL DKARAAGITVPIEAGIMPVRGAKSVRRMAERNASRIPDRLNTLLNKWGDDIQSLRAAGIL YASEQIADLVAHDVDGVHLYSMNHPATTRRIWRNAEPLFRGTQG >gi|316915387|gb|ADCN01000040.1| GENE 33 26055 - 28355 3838 766 aa, chain - ## HITS:1 COG:SP0585 KEGG:ns NR:ns ## COG: SP0585 COG0620 # Protein_GI_number: 15900494 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Streptococcus pneumoniae TIGR4 # 5 764 3 749 749 852 57.0 0 MSTLTSVSGFPRIGQNRELKKIIEGYWKGANDLAAVKATAAELRAKHWKLQQAAGIDLIP SNDFSYYDQMLDTAILLNVIPQRYARLSFDNQEDTLFAMARGYQGDKGDVTALPMKKWFT TNYHYLVPEVESAAEIKLNSTKPFDEFNEAKALGIDTKPVFIGPYTFLKLARTPEATELE LDKGLVNAVAAVYAEVLAKFNELGAAWVQLDEPYLVLDKEPGDVELFKTLYTKILSAKGN VKVLLNTYFGHIADVYETVNLLGFDGIGLDLNEGREENLEAVAKYGVASNTTIFAGVING RNIWRNNYATSLGLVDALKQVTNVAVSTASSLLHVPFSTEGETGIPAEDLKHFAFAVQKL DELKEVAALADATEDEKKASAALAANQALFDGTRVAADPAVAERIGKLSDADYVRQPARE ERQALQREALGLPLLPTTTIGSFPQTKEIRAERAKLRKGEVTKEAYDEFIKAQIDAVIKK QEEIGLDVLVHGEFERNDMVEYFGQNLNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANP ITVEWSAYAQSKTDHVMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLEAA GIKVIQIDEAALREKLPLRKSDWHVKYLDWAVPAFRLVHSAVKPTTQIHTHMCYSEFNDI IRDIDAMDADVISFEASRGDLVVLDAIHDAHFETEAGPGVYDIHSPRIPSEKEIEDRIYE ILDKMDVKKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLDK >gi|316915387|gb|ADCN01000040.1| GENE 34 28366 - 28488 66 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYAFVTRLRVAKHPDSGPYKWPQSVVIDGIYIRFSRSLSH >gi|316915387|gb|ADCN01000040.1| GENE 35 28466 - 29023 768 185 aa, chain - ## HITS:1 COG:XF1085 KEGG:ns NR:ns ## COG: XF1085 COG2062 # Protein_GI_number: 15837687 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Xylella fastidiosa 9a5c # 19 127 5 112 159 62 35.0 3e-10 MGIKLSKVAKAAKKYDHILIIMRHAKAEPFGDKGDSERELTDKGLKQAKAVGKGIESLGL VPDQISCSSVTRTRQTLDRMLKTFGDKPIVDYRISLYDGGVQAVFDELAHVKAKNRVFMI VGHEPTVSISAQWLASADSDGERLDLLNLGLSPASIVIMGSNKPFDEWQVHSGELLAVIN VKDFD >gi|316915387|gb|ADCN01000040.1| GENE 36 29129 - 30199 1479 356 aa, chain - ## HITS:1 COG:MT2178 KEGG:ns NR:ns ## COG: MT2178 COG2519 # Protein_GI_number: 15841610 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA(1-methyladenosine) methyltransferase and related methyltransferases # Organism: Mycobacterium tuberculosis CDC1551 # 6 294 5 264 280 236 45.0 3e-62 MEPRRGPLTAGEKVQFTDRKGKKITDQLVAGGSTQTEHGLILHDDVIGKTEGTVILTVHA KREAQVNQVYPEKDKNKPWKSSRAIGGWEYAVMRPRLADYVLSMPRGAQIMYPKDIAQVI QLGDIRSGMRVLESGAGSGAMSVNLLDAVGERGHLTTIELRPEFAKVAQANATLYYGEAP SWWDLKTGDFDSVAAELPEHWFDRIMLDMLDPWNRLEQAYRVIAPGGVLVSYVTTTTQMS RMAEALRAAGCWTEPQIQESFERTWKAQGLAVRPDHQMIGHTGFLVISRAMASGFEALRK RDRVTKDTQTDIDSLTDEQREAQIEELELRDISDHKLRKVLRDLDRQVGELGNTHE >gi|316915387|gb|ADCN01000040.1| GENE 37 30276 - 30914 385 212 aa, chain + ## HITS:1 COG:no KEGG:BLD_0541 NR:ns ## KEGG: BLD_0541 # Name: not_defined # Def: putative esterase # Organism: B.longum_DJO10A # Pathway: not_defined # 3 212 1 210 210 400 100.0 1e-110 MRMQMTSQIDAGGNDPIFLMFHGYGNDESEMMRILDAVYAPTRADAAPAAIAAVPSYISF RATYARPYMGGNYWYPDGCGVDERQRECAAVGDAVASLLDASAFAHRRKILIGFSQGGYL SYRLVKVHPTLFDAAILLSPSFMGEEQAALDSPTRFFLAYGAQDRTIPLPDQQTAHQVLE RAGHLTYREYSGMAHAICDEEIADIRDFLRTI >gi|316915387|gb|ADCN01000040.1| GENE 38 31082 - 31462 190 126 aa, chain - ## HITS:1 COG:no KEGG:BLD_0542 NR:ns ## KEGG: BLD_0542 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 126 1 126 126 209 100.0 2e-53 MSFDAAAFGPITLNHLPPFAQRLRHAVHVETRMGRVRRTMDERWARALRAKGIDIDEADG AGGKQAHDGKRHTDITGTGRRPESQPAAGLRGRSNTSTNLPGPKVTARATPFKATGHKGG ISRQGN >gi|316915387|gb|ADCN01000040.1| GENE 39 31628 - 31936 104 102 aa, chain + ## HITS:1 COG:no KEGG:BLD_0543 NR:ns ## KEGG: BLD_0543 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 102 1 102 102 199 100.0 2e-50 MGNDCCTPKREGDCHEVFHDWWLEDRPALNLFESLEPHDTVEIEGLGGARPEALNVGLDA WDLMPMSETRVVEWFHNHDVGSPANGTSKADDSVPSLDMPSF >gi|316915387|gb|ADCN01000040.1| GENE 40 32061 - 33020 1127 319 aa, chain - ## HITS:1 COG:lin0643 KEGG:ns NR:ns ## COG: lin0643 COG4989 # Protein_GI_number: 16799718 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Listeria innocua # 1 318 1 304 305 290 47.0 4e-78 MKTQEIGQSGMIASRVALGVMRMDALDAADAARTVAVAHDSGIDYFDTADIYGFHDHAAH ASSKRFGQAWKDAGLDRSTIFIQTKFGIDYSFGENDGGANGYDFSAKHLIDALDHELEAL QTDYVDAVLLHRIDTLFELNEVAEAFDALESSGKVRHFGVSNMGPWQIELLQSGLRQKLE INQLQFGLMHTQMLDAEIQFNMASDPAADRTGGILPYSRLKHMTIQAWCPFQSGTEYGPF VGNEHFPELNAELTRLAGKYGSTPNGIAVAWILRHPAGIQPLLGSMTPERIRQMAAGADI ELERRDWWSLYQAAGNPLV >gi|316915387|gb|ADCN01000040.1| GENE 41 33277 - 34212 954 311 aa, chain + ## HITS:1 COG:DR0133 KEGG:ns NR:ns ## COG: DR0133 COG0657 # Protein_GI_number: 15805172 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 47 299 43 278 296 92 32.0 7e-19 MNTTDSSKVSDANAGANNVIHIPHNPTLAGLATLTRNVAYKTGADNLVMDIISPQSTGDD DDRRYPTVVFVQGSAWTTPHRDYEIPQLSALAREGFVVATVNHRDASSDPHDMFPAYLED VKAAIRYLRANARQWHVDPDRLGIWGTSSGGNTSLLVGLTADDPRYEDGTNADESDAVKY VVSCFPPTDMLEAVDAFDDETNPFRLYYFGPFAAVVGATHETGINAEVRQRAADMSPYLQ VRDDQQYPPMLLLHGTADTVVPYHQSVKMRDQLVEHGVDAQLVLVDGAEHEYDFWSQQVF DVIFDFIRERS >gi|316915387|gb|ADCN01000040.1| GENE 42 34193 - 34426 308 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRTFVWAKFRKGRESRKRYSTCGFRFFHVPSGTTEARCLLRSATSFLKGVALLSRQRDV WVALSAQKHDVFSSAHE >gi|316915387|gb|ADCN01000040.1| GENE 43 34451 - 34513 63 20 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIYGLGTVWRCDCCGEYHIC >gi|316915387|gb|ADCN01000040.1| GENE 44 34631 - 34744 109 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPHFHVRQYTWVLPLLSALIKVSPASATNICGAFKF >gi|316915387|gb|ADCN01000040.1| GENE 45 34955 - 36523 1407 522 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 520 2 510 512 375 42.0 1e-104 MAKYTREQRQRAVELYVKYECCAADVIRELGYPSREALRMWHRDWLDEQGTGVSSQRGER YARYTEEQKRAAVDHYLTHGRRASRTMRQMGYPSKEVLASWIDELAPGERRIRRGPVPGE LKRDAVLKVASGELSSREAAEAVGVDSSVVRNWKRQLLGDAKGLMVAKREPERGDSSQQD DPDALRGEIATLRADLERLRAEQRAMEIRLAIMKGAAELVGKEPGADPDNLTSREKTTLI KDISETLGVNAESLLKEVGIARSTYYYQLKAMRRPDKNANLLSLVREAFGNSRRRYGYKR IHLELKSAGIIVSAKRIMRLMTSHGMVPVLKSAKRYSSYKGEIGGAPANLVNRDFHATAP NRLWVTDITEFSIPAGKVYLSPVIDCHDGMPVAWTIGTSPNAALANGMLRDACATLKPGE TPIIHSDRGCHYRWPEWIRICTEHGLTRSMSAKGCSPDNAAAEGFFGRLKQEFFHKRSFR GVTIDEFTAMLDEYMVWYRDKRIKTEYGMSIMDKRIQLGLVA >gi|316915387|gb|ADCN01000040.1| GENE 46 36648 - 36746 87 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRSARGFVSLRLLSEAKARLNRRIASLTAYQ >gi|316915387|gb|ADCN01000040.1| GENE 47 36846 - 36977 164 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALRFLSTKEVSERLGVKNASVYKLPEPDVYMALLKVSYLNNR Prediction of potential genes in microbial genomes Time: Fri May 13 13:21:34 2011 Seq name: gi|316915342|gb|ADCN01000041.1| Bifidobacterium sp. 12_1_47BFAA cont1.41, whole genome shotgun sequence Length of sequence - 52986 bp Number of predicted genes - 47, with homology - 42 Number of transcription units - 29, operones - 10 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 482 639 ## COG0501 Zn-dependent protease with chaperone function + Term 575 - 642 30.2 - Term 419 - 455 -0.9 2 2 Tu 1 . - CDS 458 - 556 71 ## - Prom 576 - 635 76.3 + TRNA 557 - 630 64.0 # Gly CCC 0 0 3 3 Tu 1 . - CDS 693 - 1760 1249 ## COG0191 Fructose/tagatose bisphosphate aldolase 4 4 Op 1 . + CDS 1977 - 3263 1971 ## COG0104 Adenylosuccinate synthase 5 4 Op 2 . + CDS 3356 - 4870 1119 ## COG0038 Chloride channel protein EriC 6 5 Tu 1 . - CDS 4786 - 5184 118 ## + Prom 4904 - 4963 2.4 7 6 Op 1 . + CDS 5057 - 6130 680 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 8 6 Op 2 . + CDS 6133 - 6525 375 ## BL0547 hypothetical protein 9 7 Op 1 . + CDS 6800 - 7885 1075 ## COG1609 Transcriptional regulators 10 7 Op 2 . + CDS 8094 - 9878 2426 ## COG3158 K+ transporter + Term 9932 - 9975 13.0 + Prom 10034 - 10093 1.9 11 8 Tu 1 1/0.250 + CDS 10295 - 11842 2289 ## COG3534 Alpha-L-arabinofuranosidase + Term 11849 - 11903 14.9 12 9 Tu 1 . + CDS 12014 - 13048 814 ## COG1609 Transcriptional regulators 13 10 Tu 1 . - CDS 13134 - 14045 527 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - Prom 14100 - 14159 1.8 14 11 Op 1 3/0.000 - CDS 14179 - 14403 279 ## COG2801 Transposase and inactivated derivatives 15 11 Op 2 12/0.000 - CDS 14593 - 15648 782 ## COG0582 Integrase 16 11 Op 3 12/0.000 - CDS 15645 - 16610 544 ## COG0582 Integrase 17 11 Op 4 3/0.000 - CDS 16607 - 17809 179 ## COG0582 Integrase - Prom 17840 - 17899 2.1 18 11 Op 5 . - CDS 17940 - 18989 622 ## COG2801 Transposase and inactivated derivatives - Prom 19029 - 19088 2.7 + Prom 19170 - 19229 2.5 19 12 Tu 1 . + CDS 19324 - 20850 2388 ## COG0366 Glycosidases 20 13 Op 1 4/0.000 + CDS 21068 - 22705 1582 ## COG0477 Permeases of the major facilitator superfamily 21 13 Op 2 . + CDS 22769 - 23812 1195 ## COG1609 Transcriptional regulators + Term 23857 - 23883 0.3 + Prom 24027 - 24086 3.4 22 14 Tu 1 . + CDS 24128 - 24196 103 ## + Term 24263 - 24293 3.4 + Prom 24222 - 24281 2.7 23 15 Op 1 . + CDS 24440 - 25807 2143 ## COG0477 Permeases of the major facilitator superfamily + Prom 25915 - 25974 4.5 24 15 Op 2 . + CDS 26004 - 27056 1659 ## COG0059 Ketol-acid reductoisomerase + Term 27086 - 27138 14.3 25 16 Tu 1 . + CDS 27485 - 28537 1630 ## COG0059 Ketol-acid reductoisomerase + Term 28598 - 28642 10.5 - Term 28712 - 28745 -0.7 26 17 Op 1 . - CDS 28772 - 29557 407 ## BLD_1325 hypothetical protein 27 17 Op 2 . - CDS 29554 - 30582 508 ## BLD_1324 membrane protein - Prom 30625 - 30684 8.3 - Term 30720 - 30770 9.5 28 18 Op 1 3/0.000 - CDS 30789 - 32603 2606 ## COG0366 Glycosidases - Prom 32693 - 32752 2.2 29 18 Op 2 1/0.250 - CDS 32763 - 33797 1002 ## COG1609 Transcriptional regulators - Prom 33834 - 33893 2.5 - Term 33830 - 33868 0.7 30 19 Tu 1 . - CDS 33928 - 36165 2501 ## COG1640 4-alpha-glucanotransferase - Prom 36275 - 36334 1.9 31 20 Tu 1 . - CDS 36426 - 36707 370 ## BLD_1320 hypothetical protein + Prom 36536 - 36595 1.9 32 21 Tu 1 . + CDS 36752 - 37408 794 ## BLD_1319 hypothetical protein - Term 37378 - 37415 -0.0 33 22 Tu 1 . - CDS 37420 - 38430 1214 ## COG1609 Transcriptional regulators - Prom 38589 - 38648 3.4 + Prom 38605 - 38664 4.9 34 23 Tu 1 . + CDS 38700 - 39416 1206 ## COG0395 ABC-type sugar transport system, permease component 35 24 Tu 1 . + CDS 39528 - 42065 3375 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 36 25 Tu 1 . + CDS 42218 - 42331 115 ## + Term 42370 - 42404 1.6 37 26 Tu 1 . - CDS 42400 - 42678 167 ## BLD_1314 hypothetical protein 38 27 Tu 1 . + CDS 42704 - 42919 61 ## 39 28 Op 1 29/0.000 + CDS 43048 - 44928 3163 ## COG0443 Molecular chaperone 40 28 Op 2 5/0.000 + CDS 44928 - 45584 1030 ## COG0576 Molecular chaperone GrpE (heat shock protein) + Prom 45678 - 45737 3.4 41 28 Op 3 4/0.000 + CDS 45816 - 46835 1712 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 42 28 Op 4 . + CDS 46850 - 47437 836 ## COG0789 Predicted transcriptional regulators + Term 47524 - 47554 0.0 + Prom 47501 - 47560 2.3 43 29 Op 1 . + CDS 47710 - 49062 1618 ## COG2233 Xanthine/uracil permeases 44 29 Op 2 . + CDS 49099 - 50220 1083 ## BLD_1308 coenzyme F390 synthetase 45 29 Op 3 . + CDS 50207 - 51706 864 ## BLD_1307 acyl-CoA reductase 46 29 Op 4 . + CDS 51760 - 52563 447 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 47 29 Op 5 . + CDS 52647 - 52986 276 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316915342|gb|ADCN01000041.1| GENE 1 3 - 482 639 159 aa, chain + ## HITS:1 COG:PH1256 KEGG:ns NR:ns ## COG: PH1256 COG0501 # Protein_GI_number: 14591074 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Pyrococcus horikoshii # 1 143 153 288 292 121 46.0 6e-28 SAIASAMATVISYLGYSLMYFGGGSRDDRDSSGGLGLIGALLSVILAPIAASLIQMAISR TREYDADEDGSLLTGDPEALASALNKISYGAQTAPMRKTAGTQSVSAMMIANPFSAVGFS RLFSTHPPTDERIARLMQMANEMNGTPIAPPTYSTRVGR >gi|316915342|gb|ADCN01000041.1| GENE 2 458 - 556 71 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPYGCCTSRDEHAQPNEARIVILARHLPTRVE >gi|316915342|gb|ADCN01000041.1| GENE 3 693 - 1760 1249 355 aa, chain - ## HITS:1 COG:ML0286 KEGG:ns NR:ns ## COG: ML0286 COG0191 # Protein_GI_number: 15827063 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Mycobacterium leprae # 1 354 1 342 345 416 60.0 1e-116 MTIATPERYAEMLDAARRGGYAYPAINVTSSQTLNAALKGFADAESDGIIQISVGGAAYV SGIGVNDRVTGSLALAAFAHEVAAKYPNITIALHTDHCAKQYLDEWVRPLLAHEADQVAR GQEPTFQSHMWDGSTVPLKENLDIAEELLDKSQKAHTVLEIEIGAVGGEEDGHSAEINEK LYSTPEDGLEVARRLGLGERGRYMAAFTFGNVHGAYKPGVVKLRPSLLGDIQARAARAVA EGELPSAAGMVYFPNGKPFELVFHGGSGSRPEEIAEAVSYGVIKMNIDTDTQYAFTRPIA DHVFENYDKVLKIDGEVGEKKFYDPRSWGRKAEDSMSARVVEACRQLGSAGKALK >gi|316915342|gb|ADCN01000041.1| GENE 4 1977 - 3263 1971 428 aa, chain + ## HITS:1 COG:Cgl2708 KEGG:ns NR:ns ## COG: Cgl2708 COG0104 # Protein_GI_number: 19553958 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Corynebacterium glutamicum # 1 427 1 427 430 573 62.0 1e-163 MPGIVLIGAQWGDEGKGKATDLIGTKVDYVARFNGGNNAGHSVVVGDESYALHLLPSGII NPNLTPVIGNGVVVDPEVLFEEIDGLESRGIDCSHLKVSEAAHIIAPYHRTLDKVTERFL GKHKIGTTGRGIGPAYADKINRVGIRVHDLFNADHLHDKVEASLHQKNQMLVKLYNRRPI DVDQTTEELLKLGERLKPYVANTGLILNKALDEGKTVLFEGAQATMLDVDHGTYPFVTSS NPTAGGACTGTGVGPTRITRVVGVSKAYVTRVGEGPFPTELLDESGEWLRQQGHEFGVTT GRPRRCGWFDAVVNRYASQVNGLTDIVLTKLDVLAGLKEIPICVAYDVDGERHDDMPTDQ AAFAAAKPIYETMPGWDEDISNCHSFDELPATCQAYVKRLEELSGCRISAIGTGPQRDHV IQINSLVD >gi|316915342|gb|ADCN01000041.1| GENE 5 3356 - 4870 1119 504 aa, chain + ## HITS:1 COG:L113400 KEGG:ns NR:ns ## COG: L113400 COG0038 # Protein_GI_number: 15673646 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Lactococcus lactis # 6 502 21 512 512 302 36.0 9e-82 MAAAGIVIGLVSGLLVVVYRLGIEYGTDASRWIYARIRETPWLIAPWAVAAVAAALAIAW MVGKEPMAGGSGIPQTNGVVICGLKMRWQTILPVRFVGGLLGALFGLSLGREGPSIQIGA SGAQCVSHRLRGRRREDMQEHYLVTAGAAAGLSAAFSAPLSGMMFALEGVHRSFSPAILM GATAASLTADFVSKYCFGLRPVLDFGDIGQLSLEEYVWLIPLGLVAGLVGSLMNRSLLGF QTLYGKLPAWSRPMVAIAIALPVGIWLPDVLGGGSNLIDTAEHARVGLGMLCLLFVAKML FTSTSFGSGAPGGIFMPILAVGSLAGGICGEVLHRFGDLPSDAVAVFAVCVMTGTLAASV KTPITSILLAVEMSGTLTHMLPVAAVAFVALLVSDLLRTKPIYGELLERYVRAQGMQMAI ASHVGSGIMELPLEMGAIADGKRVRDVRWPSGCLIIGLRRGESEIVPRGDTRLRAGDYLV VLFSGEEEREVRPAMRRLCDARLD >gi|316915342|gb|ADCN01000041.1| GENE 6 4786 - 5184 118 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLAAGAVAPACITSTVSIACVMGCESSPAVTTSPGDCSCDSIALPLYWPSADSVVPPIG RATTSWAAVAAFLTHMSLHGAPTYAPWMSDSAGSYIQSPAEFSQAQSSRASHSRRIAGRT SRSSSPLNSTTR >gi|316915342|gb|ADCN01000041.1| GENE 7 5057 - 6130 680 357 aa, chain + ## HITS:1 COG:lin2188 KEGG:ns NR:ns ## COG: lin2188 COG0239 # Protein_GI_number: 16801253 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Listeria innocua # 67 196 3 123 129 67 30.0 3e-11 MESQEQSPGDVVTAGEDSHPITQAIDTVEVMHAGATAPAANTMDPPTIPLAPMKRMQARF NPLADGLMYVVVFVGGFVGVGCRHALDMLLPSVSGTPFVVGTFVSNMVACFLFAMLTEFM ATASWLRRRVRQVVSRGVGLGLLGGLSTMSGVMLETMEGLHERHIASALGYLAGNFAGGL LTAAAGVVLMQALLSRSTRKRVRGAFSAVSVSDSAESDTQGVRHVKVADVARSAAQAAME AAQTAQQIAQTGQVPRVETPTVPPTASQPMQTGRVPQIPPLVVPQLTQSSQPLLREPDTS DLGQLPEPIQQSQPIQQPQQQSQPIQQPANPLPPSFEPKPITAEISLVADPTTGEVR >gi|316915342|gb|ADCN01000041.1| GENE 8 6133 - 6525 375 130 aa, chain + ## HITS:1 COG:no KEGG:BL0547 NR:ns ## KEGG: BL0547 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 130 242 371 371 228 99.0 4e-59 MWMICLFGGLGAMARYVLDVSIQQGWNRENRRTNRNFPLSTLVINGVASLCAGIAMMSYY SQSVDMDTVMMFVVGFLGGFSTFSTALNEVVSLIRQRRFTLALGYGIATVAVPLICVAAG FGIALLANPA >gi|316915342|gb|ADCN01000041.1| GENE 9 6800 - 7885 1075 361 aa, chain + ## HITS:1 COG:SP1725 KEGG:ns NR:ns ## COG: SP1725 COG1609 # Protein_GI_number: 15901558 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 359 5 320 321 168 30.0 1e-41 MVGMRDVAKKAGVSLSTVSLVVNGNGYVSDDMRERVRKAMQALNYVPNELARNLYHDCTN LVGVIVPTIRHPFFATFTAHLQHALAAQGLRTMLCSTADEADGEIQYVDMLRRHMMDGIV MCAHTSHPGDYWTSIHRPIVAFDRVLGDGISSIGSDHEQGGRLIAQMLIRNGAKHVVMIG GPRDQFFDLAARGEVEEGPFDLGKTTFPTVRYYLTLEQELTSAGVKYEYVEAGEVMDFAG YHRAVSNALDKVTTDGVDAVVSSDIGASFCVREALGRGISIPDELQIVAYDGTYLTDLAG MKLTAVAQDFSAIAQSAADHIVQAIANEEVAAANASRKNIPKPFEPNVLIPMTLVPGDTT R >gi|316915342|gb|ADCN01000041.1| GENE 10 8094 - 9878 2426 594 aa, chain + ## HITS:1 COG:L9458 KEGG:ns NR:ns ## COG: L9458 COG3158 # Protein_GI_number: 15672605 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Lactococcus lactis # 9 575 88 651 670 478 44.0 1e-134 MDVRFCRIIFALYSLIRKYGAWLVIPAMLGGAAFLADSVLTPAVSISSAVEGLKTLPALE HLFTENKDLTMMITAVIIVILFAVQSRGTESIGKVFGSVVMVWFAFLAIVGVVAISNDWS VLAALNPYYGIKFLFSPNNATGLALMGTVFLSTTGAEALYSDMGHVGRGNIYFTWPFIKV ALVLNYFGQGAWMLRNQNNPELADAEGINPFFQMMDPNVRYVAVVLSVTAGIIASQALIT GAFTMVSEATGLNWMPHLQVRYPARTRGQLYIPVVNVVLCVATLAVLLLFRDSEHISAAY GLALTITMITTTILLGIYLWHRSNKFGTVVFTIVFLAIQVLFFAASMAKFLHGGWFTLLL TLAILMIMYTWNEGTKLERSQRRHMMPKDFLPALDKLHGDSRIHRFADNIVYLTSDPDLK RLDTDIFFSIFADHPKRARAWWAVAVETTDEPFTREYSVESFGTDYLFRVRIRLGFKVSQ SIPAYLHQIMHDLEKTGELPNQQSIYPKLDADPGIGTIRYVVIHKALMPESKVSGRGALS LQIKYAIRRVAGSPVKWFGLAPYNPLVEVQPLFVSTRRPPRLTRVASQAPKREG >gi|316915342|gb|ADCN01000041.1| GENE 11 10295 - 11842 2289 515 aa, chain + ## HITS:1 COG:BS_abfA KEGG:ns NR:ns ## COG: BS_abfA COG3534 # Protein_GI_number: 16079924 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Bacillus subtilis # 9 515 4 497 500 479 48.0 1e-135 MPQQDHLTARLVVDDDFEVAPVNNRLFGSFVEHLGRCVYTGIYEPDHPTADEHGFRKDVI DLVKELGATTIRYPGGNFVSGYRWEDGIGPKQERPRRLDLAWHSTETNEFGLHEMAEWLE ATGGNELMEAVNLGTRGLQEALDLLEYANVPGGTELSERRRANGADKPFDIRMWCLGNEM DGPWQLGHKSAEDYGMLAASVAAGMRQIDPDVELVVCGSSAHGMPTFGKWEQTVLEKTYE NVNFVSCHAYYQPFFKEDGTRDMASFLASGVDMDGFIKDVAATIDATKAHLKSAHDVYIS FDEWNVWYQGEEPSKTPEGIGNWPVAPRLLEDIYTAADAVVFGDLMITLLKNADRVRAAS LAQLVNVIAPIMTEPGGPAWRQTTFHPFSVTARLAKGGTVLEPKLSAGTVDTPRYGEVDG VNAVAVRCADGSLAVFAVNRSLEATAEFEIRLQDGAQPASVEAQTLHDDDLFAANTLYDQ NRVTPRANGSAMYDAESGVVRVSLPPVSWTALHIK >gi|316915342|gb|ADCN01000041.1| GENE 12 12014 - 13048 814 344 aa, chain + ## HITS:1 COG:BH2219 KEGG:ns NR:ns ## COG: BH2219 COG1609 # Protein_GI_number: 15614782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 6 343 4 328 335 154 34.0 3e-37 MAKRVTITDVARETGVSIKTVSNVLNNTGSMRPETRQRVQDAIERLGYRVNVSARAMKTG GTKLIGLAITDFCQPFMPYLADSIVAAARSRGYAVITDTYNSAGGLAQAIPETKKLAADG WIFFMGSPITDRTILHQPYPLVIVGDYDTQGLADWVTMPNVEAVRTAVGALLDSGCRRIA LIGGTAENACPDADRESRPETTSTMRTRGYVLAHEERGLQVDWRLVRNADWVQSGGRDAV AGLLDDPDAPRPDAVMCLNDALAIGVIHELQRRGVRVPQDMQVIGFDNVPDAEYCMPGLT TIDPHVDDYARHAVDMLIARIEGSADPFRTYVTSYDLVRRASTC >gi|316915342|gb|ADCN01000041.1| GENE 13 13134 - 14045 527 303 aa, chain - ## HITS:1 COG:SP0312 KEGG:ns NR:ns ## COG: SP0312 COG1501 # Protein_GI_number: 15900245 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 1 186 434 602 679 117 35.0 2e-26 MYWGSPDIDAVYHVPNEYMFGTELLAAPITEPMDKSSRRGKADVWLPQGDWFDFFTGRRY SASSPNGRRMTVWRPLDGIPVFAKAGGIVPMQPLSEGDSINSVDNPQHLEIIVFPGADGD FTLMEDSGHYSRQTTPATTAITYRWRKDGATSALTVSPAQGDVHALPARRTWDFLFRGIT DSDISVQADGASVDSDRRYDAETLTLQVTVADVSTRSEIRVTIGDTTMAPDPRMEDVFDI LRHAEMRYLTKEQAYAAIAENGIDALATMDSLEHVSGPDMEDCSDSHMPSAVRQALTEVL LRS >gi|316915342|gb|ADCN01000041.1| GENE 14 14179 - 14403 279 74 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 72 439 510 512 94 63.0 6e-20 MSAKGCSPDNAAAEGFFGRLKNELFYGRDWRGVGYEEFRERLAAYLTHYNETRIKKSLDW MSPVQYRRSLGLAA >gi|316915342|gb|ADCN01000041.1| GENE 15 14593 - 15648 782 351 aa, chain - ## HITS:1 COG:mll6228 KEGG:ns NR:ns ## COG: mll6228 COG0582 # Protein_GI_number: 13475204 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 15 329 8 317 342 107 28.0 4e-23 MSKARKTAASSGEPDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQ RSHIGFGHFDRARLGRWVEWMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDA AGIRVKPPARKPVDHLGEEHTKALLTAWGTGDAKSRRNRMLLILMYDTAARIGELAALTI ADVGMDKPARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNG AIQPLSVDRIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLL GHESMSTTSAFYAFATLDMMRKAVDAANPGPDPSKETWLSEQRLRQLHTLK >gi|316915342|gb|ADCN01000041.1| GENE 16 15645 - 16610 544 321 aa, chain - ## HITS:1 COG:mll5957 KEGG:ns NR:ns ## COG: mll5957 COG0582 # Protein_GI_number: 13474968 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 12 318 4 310 312 99 29.0 6e-21 MRPTEHGFVGPLAGELEEYIRFKASMGRHGATRVRVLRSFDRHCLEHGAVRLERGVVERW IAHRIDANPGGCRSWFSYIRDFGRWMRLAHDPDAYVLSDQWKAGSPRPTPYLLTDREAAL FLRAAGTLESPSPWAWQSRAFFMLMACCGLRTREVRRLAVGHVDHKARSIDVVDSKAGRS RRLPVGDEVAAELLECNQRSRERFGDDRPAFFVTSTGNPVSPGMPGVVFRRVWTRAGLEW PQAGERPRPYDFRHRFAFANIERWTRDGVDVMAMLPYLAAYMGHAGIDSTLYYVHASPDF MDGYADLVADAERVVPETEEP >gi|316915342|gb|ADCN01000041.1| GENE 17 16607 - 17809 179 400 aa, chain - ## HITS:1 COG:mll9331 KEGG:ns NR:ns ## COG: mll9331 COG0582 # Protein_GI_number: 13488152 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mesorhizobium loti # 97 395 108 411 412 100 30.0 5e-21 MGETTVGHVAGEVVRALYGAGYMESTIGQYRKSIRALERYAGGPDAVYTRGLGAGFAAST FSERTGGFSRQRWFDYGRLARLCDSYLRSGSVDLGKWRRSRLAEPVVPGLAVVMERWEAY LAGSGLASATVGHYRRMAGLFLTWLESHGVVSLDGSDGSHVLGFLAGLRSRWSESSMRHA ASDLRPLFRWLGRDDLADAIGLAGIRRTHAIAGTLPDDEHRRLLEACASRSVPSRDAAIT LLSLTCGLRACDVIGLRIADVDWDSMSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERP ATDDDRVFVRYKAPHVALRGHSSVYEAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATP LPTISAVLGHADPDSTRVYMATHRGGMLACVLPVPEGGSS >gi|316915342|gb|ADCN01000041.1| GENE 18 17940 - 18989 622 349 aa, chain - ## HITS:1 COG:AGc3822 KEGG:ns NR:ns ## COG: AGc3822 COG2801 # Protein_GI_number: 15889390 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 64 349 135 416 512 186 36.0 6e-47 MPNQILQVDENMLETKLDRLVSEKVEQLLNAMLDAEADEITGACRRSYTLECKTNAARRA LEGEPLARVARDAGCTPTSVYQWMRRYRSEGILGLMDRRNAPMPAEPMPAAGDDVEELRR QVEVLRLENAVMRETIDVLKADDPRLDPSMLTNGERTRVVDAIRGEFGLAACLKAVGLKR GTYYYERSAIAAGDRYAVLRARVAGLFEQGGRVWGYRTIHRMLRLDESDPIVVSEKVVRR IMREGAMRPVYLKRPKRWSSYAGEIGEAPANLVERDFHADAPNMLWVTDVTQFTMDGYKC WLSPVVDCFDGMVVSWTLSRSPNADMANRMLLDAVATLRDGEHPIIHSD >gi|316915342|gb|ADCN01000041.1| GENE 19 19324 - 20850 2388 508 aa, chain + ## HITS:1 COG:AGpT251 KEGG:ns NR:ns ## COG: AGpT251 COG0366 # Protein_GI_number: 16119953 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 22 467 1 445 464 503 54.0 1e-142 MKNKVQLITYADRLGDGTLSSMTDILRTRFNGVYDGVHILPFFTPFDGADAGFDPIDHTK VDPRLGSWDDVAELSTTHDIMVDAIVNHMSWESAQFQDVLKNGENSEYYPMFLTMSSVFP NGATEEDLAGIYRPRPGLPFTHYNLGGKTRLVWVSFTPQQVDIDTDSAKGWEYLMSIFDQ MAASHVRYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHSYYKKQ VEIASKVDRVYDFALPPLLLHSLFTGHVEPVAHWTEIRPNNAVTVLDTHDGIGVIDIGSD QLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQH YLAARAVQFFLPGVPQVYYVGALAGRNDMELLRRTNNGRDINRHYYSTAEIDENLERPVV KALNALAKFRNELPAFDGEFSYEVDGDTSITFRWTAADGTSTAALTFEPGRGLGTDNTTP VASLAWSDAAGDHETHDLLANPPIADID >gi|316915342|gb|ADCN01000041.1| GENE 20 21068 - 22705 1582 545 aa, chain + ## HITS:1 COG:CC2315 KEGG:ns NR:ns ## COG: CC2315 COG0477 # Protein_GI_number: 16126554 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 161 530 53 405 418 75 24.0 3e-13 MLEPYVRPGIDDRPDLDKVLSPEDKAAVARLAIKNRRRPPEASADQPEAQAVRLASAGSS AAAAAAASVDTPAPDMSSAYLDMRDPMVAVNGQRPTAGQVSRLNWGFFAASILVGAPWVA LNTIAMPNAIARTFGYDTAVAGHIAINPATGRPLPVATELAMPLAVLVIVGVVASMFAMP LISVLSDRTRTPLGRRTPWMVGGGLLCALITLILGQNIGIIVLCIFWVFLQFAYAMLSVP LTSAISERVPDKFRPRIERWHGIGVMLGQALGVCMGALGVMFNSFAPFSYTAVLFAVSGI ATVLILPKEPSSAEQPNQLFDRSQVLDQLRPPAHAPEFSRVFAARTCMMAGVGLTGVFLW YLVRFWVYGKAVVLTSAPLTIPAGFLIAGMAVATLIGAALASWAAGPISERIEEKNIPVA RVVAGACLLYAAGLALAWGLGVWSTGTARENGMLLFALISGFAFGVYDSLGLELVMDSLP DPRRAGHDLGIYALANSAGLALAAIIGALLVNAFEHSFGYYLLFPSAIVMVLLAGIVTLT TKSAE >gi|316915342|gb|ADCN01000041.1| GENE 21 22769 - 23812 1195 347 aa, chain + ## HITS:1 COG:SP1799 KEGG:ns NR:ns ## COG: SP1799 COG1609 # Protein_GI_number: 15901628 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 2 347 8 328 333 164 32.0 2e-40 MVGMRDVAKAAGVSLSTVSLVVNNTGYVSADMRAKVESAMRQLNYIPNELARNLYRNRTN TIGVIMPTIAHPFFSTLTAHLQREFAARDLKTLLCSTADADKGEVEYVDMLQRHMMDGII MAAHTEHPADYWTSIHRPIVAFDRTLGEGVPVVRSDHEQGGRLIARQLIDSGARHVVLVG GPRSQFAAATTFPTIRYHLTVERLLADAGIACDYVEAGAVADIAAHEATACAIFEQYPDV DAIVGSDVVASVALQEASRRGIEVPADLQVIAYDGTLMAETAGKRLTAIRQDFPAIAAAL AVRMDSQIAADGGPASPSKNDSASDVDTQPTPEEVIPVALIPGETTR >gi|316915342|gb|ADCN01000041.1| GENE 22 24128 - 24196 103 22 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTGFNASAFVSARIISPSSLAD >gi|316915342|gb|ADCN01000041.1| GENE 23 24440 - 25807 2143 455 aa, chain + ## HITS:1 COG:Cgl1432 KEGG:ns NR:ns ## COG: Cgl1432 COG0477 # Protein_GI_number: 19552682 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 14 453 16 459 462 382 52.0 1e-106 MTAAVEETGLGQAAGKAATLVRDSVKTVIAASMVGTAIEFYDFYAYGTAAANYFPHIFFS AKDNPTVALLMSLLTFAVAFIARPLGSLIFGHFGDRMGRKTTLVVSLMTMGVGTFLIGCL PTYDQVGVGAVAILCLLRFIQGVGLGGEWSGAALVATENAPEDKRALYGSFPELGAPIGF FLSNGTYFVLESFNNQDAMLAWGWRVPFLLSAILVIVGLVVRVHMEETPIFRMAQEQKKV VKSPLTEVFRKSWRQVLQATFLVAVTYTLFYTLATWSLAWGTKEQGEGGGNLGFTNQEYL LMLMISICVFALFIVLSCLYADKIGRRRVLTFSSCALVVFAVLFPFLLDGGLVGQKNFFA NMVFLCVGFALMGIAFGPIGAFLPELFDANVRYSGSGIGYNLAAIVGAAFVPTIATWLSS HWGVHSVGLYLAVMAVCCLVSVLTCKETKDVDFTK >gi|316915342|gb|ADCN01000041.1| GENE 24 26004 - 27056 1659 350 aa, chain + ## HITS:1 COG:MT3081 KEGG:ns NR:ns ## COG: MT3081 COG0059 # Protein_GI_number: 15842559 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Mycobacterium tuberculosis CDC1551 # 1 326 1 328 337 352 54.0 5e-97 MAATIWYEKDADLSVFDGKKVAILGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVEFAKE QGLEVKPVGEAVAEADVVMILLPDQYQAAVYKKDVEPNLKPGAALAFAHGFNIHYGYIKP SEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPDGKTWPLCLAYAKALGALRAGA IKTTFTEETETDLFGEQDVLMGGINHLCDLGFDVLTEAGYQPEIAYFEVFHELKMLVDLA NEGGLNKARWSCSDTAQYGDYTSTVITEETKKRMQYQLKRIQDGSFAKEFMDDQAAGAPK FKKLQEEYSHPHLETVGPKLRAMFSWNNAEAKDKDEAESFNGKIARTQVQ >gi|316915342|gb|ADCN01000041.1| GENE 25 27485 - 28537 1630 350 aa, chain + ## HITS:1 COG:MT3081 KEGG:ns NR:ns ## COG: MT3081 COG0059 # Protein_GI_number: 15842559 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Mycobacterium tuberculosis CDC1551 # 1 326 1 328 337 378 57.0 1e-105 MAAQIWYENDGDLSVLEGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVDFAKE QGLEVKSVAEASAEADVIMILAPDQYQRTIWANDIEPNIKPGAAVAFAHGFNIHYGYIKP SEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPRGDGWALTLAYAKALGALRAGA IKTTFKEETETDLFGEQNVLMGGVNKLVEMGFEVLTDAGYQPEIAYFEVCHELKMLVDLM NEGGLNKARWSCSDTAQYGDYVNTVINEDCRKRMEYHLQRIQDGSFAKEFIDDQDAGAPH FKELQEKYSNERIETVGPKLRAMFSWNKDGVKDADEANSFTGKIARAQVQ >gi|316915342|gb|ADCN01000041.1| GENE 26 28772 - 29557 407 261 aa, chain - ## HITS:1 COG:no KEGG:BLD_1325 NR:ns ## KEGG: BLD_1325 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 261 1 261 261 533 100.0 1e-150 MTQGLQLIRTAFAGYEDSYVIIGGTACDIIMTDNELDFRATKDIDMVLIAEGHLREFAQR LWSFIRDGGYTSITKNSAQPHLYRFMHPSTYGYPTMIELFSRHPDFPIVPNSFLTPLHIA NDVSSLSAIMLNDSYYRLLQQGRESIQGISVLNEKYLIPFKAKAWLDLNAREQHGEHVDG KDLKKHKYDVFRLAQLLAPEDRVSLNDEAYHDLADFLGKISHETLPIKQLGIRGTQQDII DLIAGVYQLSIPPRDELPTTR >gi|316915342|gb|ADCN01000041.1| GENE 27 29554 - 30582 508 342 aa, chain - ## HITS:1 COG:no KEGG:BLD_1324 NR:ns ## KEGG: BLD_1324 # Name: not_defined # Def: membrane protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 342 1 342 342 657 100.0 0 MDAEHYIRETLGLPCQITSWNGTASLPLFLTNGRTFSKLTIDNTSMLIASGEAHPFSITR VTADASRLEQRTDLPIVFQFPRLSAYQRKALIQNHVPFIVPGTQLYIPSLGMVFTQRISS RPLENAQDIEVRPFSPATQLVWLYLLYSNESKVQSDIARALQFTEAQVSVAVTLLEQLAF VHRTKQGRSNSVELLTSRQTSRLDLLKSSWHLLKSPIFSKYTVTNRNRQMIADELIPAGE FALSHRTQLATPKLRIYAVERHWLKQHNKELCIIDPALEKVPDNAYILELWRYDPRLLAQ YTQEDYLADPISTALTLGEIADERLEDAIQESIRNTFSGATI >gi|316915342|gb|ADCN01000041.1| GENE 28 30789 - 32603 2606 604 aa, chain - ## HITS:1 COG:Rv2471 KEGG:ns NR:ns ## COG: Rv2471 COG0366 # Protein_GI_number: 15609608 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Mycobacterium tuberculosis H37Rv # 6 603 27 546 546 374 41.0 1e-103 MTANNLNDDWWKQAVVYQIYPRSFKDVNGDGLGDIAGVTEKMDYLKNLGVDAIWLSPFYP SDLADGGYDVIDYRNVDPRLGTMDDFDAMAEAAHEAGIKVIVDIVPNHTADKHVFFQEAL AAEPGSPARDRYIFRDGRGEHGELPPNDWQSFFGGPAWARVADGQWYLHLFDKAQPDVNW KNPDIHEEFKKTLRFWSDHGTDGFRIDVAHGLAKDLESKPLEELGREYSVVGVLNHDFSH PLFDRREVHDIYREWRKVFNEYNPPRFAVAEAWVVPEHQHLYASMDELGQSFNFDFAQAN WYADEFRKAIAAGLKAAAETGGSTTTWVMNNHDVPRSPSRYGLPQVKGAPYHQLPHDWLL RNGTTYPEDRELGTRRARAAALMELGLPGAAYIYQGEELGLFEVADIPWDRLEDPTAFHT AQATMDKGRDGCRVPLPWTASDEPALADFSRPAPADDGTGENHVPLCAAGQFGTGASFGF SPAVRADGVTPAADPHLPQPLWFKDYAVDVEQADPDSMYTLYHAALAIRQESLTATRDTT AEQVGMGDDVVAYTRAAVGGRVFTSITNFGNAPIALPDGSVVLASGPLTPEGQLPTDTSA WVVQ >gi|316915342|gb|ADCN01000041.1| GENE 29 32763 - 33797 1002 344 aa, chain - ## HITS:1 COG:CC1627 KEGG:ns NR:ns ## COG: CC1627 COG1609 # Protein_GI_number: 16125873 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 4 337 2 335 335 125 31.0 2e-28 MTKASIQAVAREAGVSVSTVSRTFAKPDLVLPETRDRVMTAAEKLDYSVSRSAAALKSGQ SFRIALLASETITTWFNANIFAGLDSALRPSGYDTVPYPMRNAAERHDFFADLPVRRNAD AVIVSSFDIEPAEVERLKHMHVPIVGINIPSTDGFDAGVSIDDYAATRSAIEHLIALGHR HIAFVGSAPTETNMRYSAEARLQGVIDAAAAHPGIELTPLSIQRGLGESNAALNTVLNAS PSITAFCFEDDEMAAPVLYRLRQYGRRVPQDISIIGFDDSTLSAAVGLTTLHQDPFAMGV AAGHMVLDAIAGKSIEPAFVRPDTPLILRETTAPPAATAASAQA >gi|316915342|gb|ADCN01000041.1| GENE 30 33928 - 36165 2501 745 aa, chain - ## HITS:1 COG:MT1831 KEGG:ns NR:ns ## COG: MT1831 COG1640 # Protein_GI_number: 15841250 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Mycobacterium tuberculosis CDC1551 # 37 741 4 714 724 513 43.0 1e-145 MTDAYGNDAATSTGTIADTTNDAASGAPQRAESTERLARPLIKLAKACGLATSFIDQLGT YTEISDAALVAVLKALDVDASSDEAIVRSMTQLEVENSKRLLPSTIVATTGKPTGITLNC SSDADITASIELEDGTAFGHFALLPNLNSGKPDLTIAPDLPMGYHTLTVTVDGREGKAAI IAAPARIPVPEAVAEHQRWGWMTQMYSVRSRESWGIGDYGDLKRLLADAAEKSKADFMLI NPIHAGAPIPPLEPSPYLPESRRFLNVTYIRPQDIPEYATLPADVRAQVDALHDSVAARN DESTPMDINAAWEAKRPALRLIFEAGRNNKRELEFEHFKTTAGPDLDSFATWCLCFEVWG APWGENRWFFEKTIDDPAVRQLVEEHHDLFEFNRWLQWIAAEQVNAAQQEALDHGMTLGL MQDMAVGVHGLGADAWANPERFASGGVTVGCPPDFYNQQGQDWGQPPFNPRYLEATGYQV YREMVHSMYEHAGAVRIDHVLGLFRLWWIPQGLGARNGAYVTYNHEAMLGVLAIEATRAG GMVVGEDLGTVPDYVRRILADHGVLGTDVEWFNRVDDSPNAGDPYRAPKDYRKQALASVT THDLPPTAGYLNFAHVKLREELHLLSEPVEAFAASAMAERTAMMNRLVENGYISQTVADD VEGHVQEIVEAMHAMLTDTPSLLLQAALVDGVGECRSQNQPGTSREYSNWRVPLADSSGH VVHTDEVFDLPRVQSLAAVMRREKR >gi|316915342|gb|ADCN01000041.1| GENE 31 36426 - 36707 370 93 aa, chain - ## HITS:1 COG:no KEGG:BLD_1320 NR:ns ## KEGG: BLD_1320 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 93 1 93 93 172 100.0 3e-42 MQAGFDMDLYLDWRRDGHPNGYNLLLRNTDTPMEHEGDSSYFNADSGASIASFLTEYLPD ELSSDADVLLSLGEPAVSGGQLTLSPQSFVVFG >gi|316915342|gb|ADCN01000041.1| GENE 32 36752 - 37408 794 218 aa, chain + ## HITS:1 COG:no KEGG:BLD_1319 NR:ns ## KEGG: BLD_1319 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 218 1 218 218 351 99.0 1e-95 MDSDKAAVWVTNWDTERNGSSLTTRDGTSYLLANAFMLAYDYGQPHIFSGYYYAGVDDGA PGATRTSVPDMTCPTDGIETAGTWHCAQRWTAIRGMIGFRNAVAGTFTATVAKGSAVALY AGATPANWAGTRKYDPSDPAWFTGETPHKGDDTAAKSADSAASAKSGDAKSGKATSDAIR RAATLAAILLPVIVGVTFMAIARRNGKAQSDNSGPNND >gi|316915342|gb|ADCN01000041.1| GENE 33 37420 - 38430 1214 336 aa, chain - ## HITS:1 COG:CC1627 KEGG:ns NR:ns ## COG: CC1627 COG1609 # Protein_GI_number: 16125873 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 3 332 2 333 335 127 31.0 3e-29 MKASIEDVARQAGVSTATVSRAFSRPDMVSAKTRAKVMEAAQQLDFSVSRMAGILKSGRS HRVALLVGSSKLDWFTSRIIEGLNEVLRSAGYDLVIQPIGDAGAREEFFDELPVRGNADA VIVSAFAITPAEIRRLNTTRIPLIGINTASQGFTASVGIDDKAGIRLIVRHLTTLGHRNL LYLYETFDATMGFSSHNRVTGFLEACSELDGVTGQTMDMQAGDDPVDAALTALLARDDAP TALCFHQDSLAIPLFFRLRQCGMAIPTDLSVTGFDNSTFSGEVGLTTVRQKPYDMAVAAA RKALDLIEGRTLDQPHEIFPVQLLVRDSTAAPRVRG >gi|316915342|gb|ADCN01000041.1| GENE 34 38700 - 39416 1206 238 aa, chain + ## HITS:1 COG:AGl1773 KEGG:ns NR:ns ## COG: AGl1773 COG0395 # Protein_GI_number: 15891000 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 134 238 243 347 347 96 38.0 4e-20 MKIKKSLAALTATVSIMALATGCSSSGSSGVVDTQADKGLAVMGDTITYDPNHLVNDGQP IELGYWSWGDESTDPVISMLHEYEKIHPNVTFKISQVAWSDYWVKTPLSLKGNKNAPVLF NVHNSEDALLRPHAVRLDGASDWRIFHQVVLPMSRNSIAALAIFTFLWNWEDYLWPFLMI TDDDKQLLSVGLKMFSGQYGTDYGGLFAATSVTIIPVVIVYLVFQKQFIAGIATGSGK >gi|316915342|gb|ADCN01000041.1| GENE 35 39528 - 42065 3375 845 aa, chain + ## HITS:1 COG:SP0312 KEGG:ns NR:ns ## COG: SP0312 COG1501 # Protein_GI_number: 15900245 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Streptococcus pneumoniae TIGR4 # 98 716 9 594 679 625 50.0 1e-178 MAQSPQLKQSSPTSPDPQDFRLDATPAMRADNVVSGEHWRIGLITDSLVRFEWSDSGVFE NRPTQTVLNRDFGSPVERRVTERDGRVIIDTAALTIVYDQQPFSKEGLSVVVKGVADTQF NTWHYGDAQRGNLKGTARTLDEADGAIELDNGVISRDGWAVIDDSAANIIIETDTVNGKA NPFGTWVSPRATAETDLYFFGYGHRYIEAVRDFYRLTGPTPLLPRFAMGNWWSRYYRYTQ DGYLALMDRFKREGIPFTTSVIDMDWHRVDDVDPKYGSGWTGYSWNRELFPDPPAFLADL HRRGLRTTLNVHPRDGVRAFEDAYPEVAKRVGIDPATEENVEFDLTNPDFVDAYFDMHHR MEAEGVDFWWLDWQQGGVTRQKGLDPLWMLNHMHYLDSGRGGNWPLTFSRYAGPGSHRYP VGFSGDTIVTWESLAFQPQFTATASNIGYGWWSHDIGGHMFGYRNEELEARWYQLGAFSP INRLHSSNSPFSGKEPWNFNRDVSAAMVDALRLRHAMMPYLYTMNYRAAEAGRPLVEPMY WQNPDTPDAYEVPDEFRFGTELVVAPIVSPDDAAACRGRADAWLPQGEWFDFFDGRRYVS SDAAGRRLEVWRSLDRTPVFAKAGAIVPLQDVAESGEAVNSIANPQALRVLVFPGADGSF VMREDRGTWGATSADTAIAFTWGGADASPSAFTVAPVTGDTSAVPESRDWTVVFRGVAPV DAASGVRAWSGEAPVEATVAYDEATMSLTVSVTGISSAASLRIEIPGGLRIADNPVESDA MDLLLHAQMLYRTKELALQAVHKLGIGAIGALRTMNRGPRYANDFWITDMPDAVAGALEE ILLRS >gi|316915342|gb|ADCN01000041.1| GENE 36 42218 - 42331 115 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHKVKQHKGVAVAAAVCAVAMAASLATHAGAAGDRRY >gi|316915342|gb|ADCN01000041.1| GENE 37 42400 - 42678 167 92 aa, chain - ## HITS:1 COG:no KEGG:BLD_1314 NR:ns ## KEGG: BLD_1314 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 52 25 76 113 97 92.0 2e-19 MFVADFLRELFGNIARYADSTQRYVVLVSAAQDRVTIDVTDRPRQGGTTLEGRHSGLAYY RERVLHAHGDWDVREKRGQWVLHASVPVDNAG >gi|316915342|gb|ADCN01000041.1| GENE 38 42704 - 42919 61 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPPSDNNVADTPHAPQSRAAAGKSDGKADGAPQSPLAVFCISGFWLQTHHSVIAVSHSHK KLEPNILNFLC >gi|316915342|gb|ADCN01000041.1| GENE 39 43048 - 44928 3163 626 aa, chain + ## HITS:1 COG:Rv0350 KEGG:ns NR:ns ## COG: Rv0350 COG0443 # Protein_GI_number: 15607491 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Mycobacterium tuberculosis H37Rv # 1 607 1 608 625 748 67.0 0 MARAVGIDLGTTNSCIATLEGGEPTVIVNAEGARTTPSVVAFSKSGEILVGEVAKRQAVT NVDRTISSVKRHMGSDWTVDIDGKKWTPQEISAQILMKLKRDAEAYLGEPVTDAVITCPA YFNDAQRQATKDAGKIAGLNVLRIINEPTAAALAYGLEKGKEDERILVFDLGGGTFDVSL LEIGKDDDGFSTIQVQATNGDNHLGGDDWDQKIIDWLVSEVKNKYGVDLSKDKIALQRLK EAAEQAKKELSSSTSTSISMQYLAMTPDGTPVHLDETLTRAHFEEMTSDLLGRCRTPFNN VLHDAGISVSDIDHVVLVGGSTRMPAVKELVKELTGGKEANQSVNPDEVVAVGAAVQSGV IKGDRKDVLLIDVTPLSLGIETKGGIMTKLIDRNTAIPTKRSEVFSTAEDNQPSVLIQVY QGEREFARDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSMTI TGGSGLPKDEIDRMVKEAEAHEAEDKKRKEDAETRNQAEAFAYSTEKLVNDNKDKLSDDI VKEVTDKVNALKEALKGDDTEKVKTAQTELMTAAQKIGQVLYAQQGAEGAAAGADGAGAS AGSASGSDDDTVEAEVVDDDDDKDNK >gi|316915342|gb|ADCN01000041.1| GENE 40 44928 - 45584 1030 218 aa, chain + ## HITS:1 COG:ML2495 KEGG:ns NR:ns ## COG: ML2495 COG0576 # Protein_GI_number: 15828349 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Mycobacterium leprae # 55 213 34 188 229 83 35.0 3e-16 MSEFNKDDYLNDLPDPSDAEAAAQASSGADASAESGSAQDSAAQAPSDEGADAAPAAAEG EKTGEGQSDSADTLTPLGKAKKEAADYLEALQRERAEFINYRNRTQKEQERFRQHGIIDV LTALLPALDDIDRIREHSEMDDSFKAVATKIDKAFEKFGVEKFGEKGEDFDPTKHDAILH KPDADAEKETVDTVVEAGYRIGDRVIRAARVVVASPQN >gi|316915342|gb|ADCN01000041.1| GENE 41 45816 - 46835 1712 339 aa, chain + ## HITS:1 COG:ML2494 KEGG:ns NR:ns ## COG: ML2494 COG0484 # Protein_GI_number: 15828348 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Mycobacterium leprae # 1 315 1 357 388 154 32.0 3e-37 MAENEWLSKDFYKVLGVSKDASDDDIKKAYRKLARKYHPDVNKTKEAEEKFKDISEAYDV LSKKEDRQKYDAIRQFGMGGARFAGGSGGFDASGFSDIFGSMFGQGAGGNGSRIRFSTSG GGPNNINDIFSMFGGAAGQGGQPYGGYGQSPYGNAGGYGYEEAPRPENGEDRNSKISLTL RQAVKGATVSLSVDGKKFKAHVPAGVKDGQKIKLAGKGKLGINGGKAGDLYLHVTVKPDA TFSMRGHDIVMDLPVTVGQAVAGGKVEAKDIDGNPVTFKVPAGSSSGAEVKLTGLGVQRS NQPGDLIGRVQIMVPAKPGLAVKHAAKEFDEKAGDYLSL >gi|316915342|gb|ADCN01000041.1| GENE 42 46850 - 47437 836 195 aa, chain + ## HITS:1 COG:Cgl2737 KEGG:ns NR:ns ## COG: Cgl2737 COG0789 # Protein_GI_number: 19553987 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Corynebacterium glutamicum # 35 161 18 144 146 89 41.0 6e-18 MARLANQMKQLYAMCATALVMGRADLDGADDVGFDIELPIFTVGQTAELANIHPQTLRQY DRLGLVRPQRTDGGARRYCLRDIARLTRAQRLSQDEGINLSGIARILVLEEENRQLRREV KRMQTGDQESVFAAGRDGNIVEIQRSNRARLWRNAIRRETRELPGRDTAADIAAGATGDS NYTPADSKSMVLWGW >gi|316915342|gb|ADCN01000041.1| GENE 43 47710 - 49062 1618 450 aa, chain + ## HITS:1 COG:DRA0176 KEGG:ns NR:ns ## COG: DRA0176 COG2233 # Protein_GI_number: 15807845 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Deinococcus radiodurans # 9 440 40 476 480 172 33.0 1e-42 MSIRKELTAQNVLLGFQHVLVSNVWLDPVFVAGAIGLPIALSSNMINAIFIVSGLVTLVQ ATRLVRLPVVQGPSAAFDALMIAAGTAGMLGAASSSILIASLVFLLLCLTGVIERMRFLF SPMISGVVIFMVGVSLSGFTLSEFLGGAPGDKTFADPHILTVSILTTAIVLVLSLLGKGL LKSFSFLIALVVGTVVAAAFGMVDFSPVASKGWLGLPTFLPYGPFTFDWKIFIPFFIAYM VAVMEALGVYQAASEIQGTSLERKQVRYGLAGEAAGSAISSLIGGFTTTAYPQNVGLLNL TGEGKLRTRTPVIIAAVLLLILGFVPKAGALLSVIPSAVVGGIFLPAAASLIVTGLRALR KVADDERRQTVIGMSLLLGIALPKALSGLTGGASVFFGNNIMVGVFSAIILNALFVALPD LVAKHRAPASVDVPAADPADGTGAAAYDER >gi|316915342|gb|ADCN01000041.1| GENE 44 49099 - 50220 1083 373 aa, chain + ## HITS:1 COG:no KEGG:BLD_1308 NR:ns ## KEGG: BLD_1308 # Name: paaK # Def: coenzyme F390 synthetase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 373 1 373 373 798 100.0 0 MTDVMDDARRIKRGILDFIHTYGCEQAPEEAFGALARDVFIYQYTYDLPYRRYCAAKRVT PATLKDWREIPPMPVDGFKHLDLSTIPTEQCEAVFMTSGTTHGGKMRGRNFHPDLEVWDE SMIVPFRHFIMPDRERIRIAVISPAWDMNQNSSLSRYLTKAVECCGSEGSGVFFDEHGLK FDEIIAFLNRAVSDGEPVMLMGVSSSYLYLFDYLHEHDLTFALAPDSRLFDTGGFKSTKR DITEDQMLDELEQTLGVPRHHCVNMYGMTELSSQIYDQNILSWYTDGTSNYLKANPAWVR TVFLDPETLTPVKDGETGVIAHYDLANWNSCIGILTEDLGHRTPDGFLLQGRAKGAEARG CSIAVDEVISANR >gi|316915342|gb|ADCN01000041.1| GENE 45 50207 - 51706 864 499 aa, chain + ## HITS:1 COG:no KEGG:BLD_1307 NR:ns ## KEGG: BLD_1307 # Name: luxC # Def: acyl-CoA reductase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 499 1 499 499 975 100.0 0 MPTVDESVSQAIDVFHLPSGVDVSDYEIYEVATSDGVKRLRYPRLDGSKVTSLAKQLVDV RNRTLAAMSVNDILDIVADAAQLWADPDFELRRQAELLIPAITGYEPDMVRIELKRYMRQ FRRRELLRFLDSEIGQPSMLDEFRPNKAGGYSKYVGPALTYQVFSSNVPGIPVWSMAMTL LVKGAILGKSSFSEPVMPAFFARSIAMVNSDLADAIAVVPWKGGSQQLEDSAIDAADAVI VYGSSQTTKLIAGKVAGSKPCLGYGAKVGLAFIGREALRPDTYADTVHRVAVDIATYDQQ SCLAPQTVFVETDGALTPREVAQLLGGELENQQRKYPRSVLSDAENVAIQRARTDAEMRA LMGGKAAVFASGHSTAWSVLYRELDGSGADEDVASLMSPLNRTVNVVAVPDLLDAARRLT SCRGWLQSCGVAVDSTRLFGLADTLAEVGVNRICPLGEMDRAKSGWHHDGGFNLIDLLRA VDVERGSDAYSDSFDMDME >gi|316915342|gb|ADCN01000041.1| GENE 46 51760 - 52563 447 267 aa, chain + ## HITS:1 COG:BH2491 KEGG:ns NR:ns ## COG: BH2491 COG1028 # Protein_GI_number: 15615054 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus halodurans # 15 266 2 246 246 167 41.0 2e-41 MTEQSDMARRPMVNLDGRTAIITGSGKGIGAAVAKCLASHGAAVVINYVHDAASAQRTVE DIHSLGGLAIAVQADVCDESQSSKLVGTAVDSFGGVDILVNNAFGRFSFDPRRRSTFAGG DWDEFSAQIEGCLHGAYLMCSHVVPLMRAQTSGRIINISSNLVDSPIVPYHSYITAKGGL VGMTRSLAQELGGFGITVNAIAAGLTAGTASSAATTEDVRERIIAMTPLGRLARPDDIAG GVALLASDMAGFITGQCLHVDGGLTMR >gi|316915342|gb|ADCN01000041.1| GENE 47 52647 - 52986 276 113 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 113 1 113 368 187 96.0 1e-46 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDAL Prediction of potential genes in microbial genomes Time: Fri May 13 13:22:44 2011 Seq name: gi|316915283|gb|ADCN01000042.1| Bifidobacterium sp. 12_1_47BFAA cont1.42, whole genome shotgun sequence Length of sequence - 52439 bp Number of predicted genes - 62, with homology - 51 Number of transcription units - 28, operones - 11 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 223 243 ## gi|154488094|ref|ZP_02029211.1| hypothetical protein BIFADO_01665 2 1 Op 2 . - CDS 233 - 850 523 ## COG0629 Single-stranded DNA-binding protein 3 1 Op 3 . - CDS 850 - 1230 444 ## 4 1 Op 4 . - CDS 1227 - 1448 276 ## Blon_1790 hypothetical protein 5 1 Op 5 . - CDS 1451 - 1714 393 ## 6 2 Op 1 . - CDS 1978 - 2223 214 ## Blon_1788 hypothetical protein 7 2 Op 2 . - CDS 2220 - 2408 297 ## - Prom 2453 - 2512 1.5 + Prom 2398 - 2457 1.9 8 3 Tu 1 . + CDS 2490 - 2774 354 ## + Term 2800 - 2849 2.7 - Term 2735 - 2771 4.2 9 4 Tu 1 . - CDS 2934 - 3122 75 ## 10 5 Tu 1 . + CDS 3046 - 3660 464 ## 11 6 Op 1 . - CDS 3587 - 3868 276 ## 12 6 Op 2 . - CDS 3868 - 4122 269 ## - Prom 4187 - 4246 4.2 + Prom 4178 - 4237 3.6 13 7 Op 1 . + CDS 4405 - 4650 87 ## 14 7 Op 2 . + CDS 4693 - 5757 600 ## COG0270 Site-specific DNA methylase 15 7 Op 3 . + CDS 5750 - 7804 782 ## Blon_1146 hypothetical protein 16 7 Op 4 . + CDS 7849 - 8001 70 ## 17 8 Tu 1 . + CDS 8490 - 8756 464 ## Blon_1147 hypothetical protein + Term 8790 - 8822 -0.3 - Term 8813 - 8868 9.2 18 9 Tu 1 . - CDS 8875 - 9411 205 ## gi|224282978|ref|ZP_03646300.1| hypothetical protein BbifN4_04035 - Prom 9431 - 9490 1.9 19 10 Tu 1 . + CDS 9489 - 10652 1101 ## COG0582 Integrase + Term 10743 - 10782 10.1 20 11 Tu 1 . - CDS 10775 - 11566 834 ## COG3001 Fructosamine-3-kinase 21 12 Tu 1 . + CDS 11711 - 12595 1276 ## COG1968 Uncharacterized bacitracin resistance protein + Term 12718 - 12746 1.0 22 13 Tu 1 . - CDS 12750 - 13607 782 ## BL0722 hypothetical protein - Prom 13760 - 13819 78.0 + Prom 13401 - 13460 3.0 23 14 Tu 1 . + CDS 13643 - 13747 61 ## + TRNA 13743 - 13818 76.7 # Gly GCC 0 0 + TRNA 13843 - 13913 54.7 # Cys GCA 0 0 + TRNA 13955 - 14029 78.9 # Val GAC 0 0 + TRNA 14075 - 14147 80.7 # Val CAC 0 0 + TRNA 14179 - 14254 84.4 # Gly GCC 0 0 + Prom 14182 - 14241 78.2 24 15 Op 1 4/0.000 + CDS 14403 - 16436 3321 ## COG0441 Threonyl-tRNA synthetase 25 15 Op 2 . + CDS 16489 - 17073 572 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases + Term 17074 - 17110 2.5 + Prom 17133 - 17192 2.7 26 16 Op 1 8/0.000 + CDS 17212 - 17967 1258 ## COG0217 Uncharacterized conserved protein 27 16 Op 2 14/0.000 + CDS 17973 - 18557 546 ## COG0817 Holliday junction resolvasome, endonuclease subunit + Term 18564 - 18593 -0.2 28 16 Op 3 29/0.000 + CDS 18615 - 19241 763 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 29 16 Op 4 . + CDS 19241 - 20305 1109 ## COG2255 Holliday junction resolvasome, helicase subunit 30 16 Op 5 . + CDS 20370 - 20807 800 ## BLD_0454 preprotein translocase subunit 31 16 Op 6 . + CDS 20871 - 21452 723 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Prom 21459 - 21518 1.8 32 17 Op 1 39/0.000 + CDS 21549 - 22751 1667 ## COG0045 Succinyl-CoA synthetase, beta subunit 33 17 Op 2 . + CDS 22751 - 23662 1467 ## COG0074 Succinyl-CoA synthetase, alpha subunit 34 17 Op 3 . + CDS 23736 - 25061 833 ## BL0734 hypothetical protein 35 17 Op 4 . + CDS 25009 - 26646 2357 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) + Term 26689 - 26747 9.2 36 18 Tu 1 . + CDS 26792 - 27094 239 ## BLD_0460 hypothetical protein 37 19 Tu 1 . - CDS 26993 - 27961 1190 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 28048 - 28107 1.8 + Prom 27998 - 28057 2.9 38 20 Op 1 . + CDS 28157 - 28927 1014 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 39 20 Op 2 . + CDS 28924 - 31053 2664 ## COG1160 Predicted GTPases + Term 31065 - 31103 3.1 + TRNA 31118 - 31194 83.1 # Pro GGG 0 0 + Prom 31121 - 31180 80.4 40 21 Op 1 . + CDS 31408 - 32937 1774 ## COG4284 UDP-glucose pyrophosphorylase 41 21 Op 2 . + CDS 33077 - 34990 2225 ## BLD_0465 putative transcriptional regulator 42 21 Op 3 . + CDS 35001 - 35318 432 ## BLD_0466 hypothetical protein 43 21 Op 4 . + CDS 35331 - 37922 2676 ## COG4581 Superfamily II RNA helicase + Term 37959 - 38000 -0.6 + Prom 37950 - 38009 1.7 44 22 Tu 1 . + CDS 38038 - 38385 443 ## BLD_0468 hypothetical protein + Term 38410 - 38453 5.8 + Prom 38388 - 38447 4.5 45 23 Op 1 . + CDS 38517 - 39236 896 ## COG0546 Predicted phosphatases 46 23 Op 2 . + CDS 39263 - 39514 287 ## BLD_0470 hypothetical protein 47 24 Tu 1 . - CDS 39648 - 39887 286 ## BLD_0471 hypothetical protein - Prom 40067 - 40126 5.3 - Term 40126 - 40168 11.1 48 25 Op 1 4/0.000 - CDS 40186 - 40818 670 ## COG0789 Predicted transcriptional regulators 49 25 Op 2 . - CDS 40919 - 41362 483 ## COG1716 FOG: FHA domain 50 25 Op 3 5/0.000 - CDS 41369 - 42190 704 ## COG3879 Uncharacterized protein conserved in bacteria 51 25 Op 4 5/0.000 - CDS 42206 - 42538 519 ## COG3856 Uncharacterized conserved protein (small basic protein) 52 25 Op 5 2/0.000 - CDS 42538 - 43515 891 ## COG3879 Uncharacterized protein conserved in bacteria 53 25 Op 6 . - CDS 43505 - 44122 833 ## COG0558 Phosphatidylglycerophosphate synthase 54 25 Op 7 3/0.000 - CDS 44136 - 44987 1202 ## COG0040 ATP phosphoribosyltransferase 55 25 Op 8 . - CDS 44999 - 45262 575 ## COG0140 Phosphoribosyl-ATP pyrophosphohydrolase 56 25 Op 9 . - CDS 45325 - 45993 1079 ## COG0036 Pentose-5-phosphate-3-epimerase 57 25 Op 10 3/0.000 - CDS 46069 - 47016 1323 ## COG0682 Prolipoprotein diacylglyceryltransferase 58 25 Op 11 37/0.000 - CDS 47129 - 47998 358 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 59 25 Op 12 . - CDS 48022 - 50109 3307 ## COG0133 Tryptophan synthase beta chain 60 26 Tu 1 . + CDS 50310 - 51002 522 ## COG2135 Uncharacterized conserved protein 61 27 Tu 1 . - CDS 51132 - 51983 1120 ## COG0648 Endonuclease IV + Prom 51992 - 52051 2.0 62 28 Tu 1 . + CDS 52086 - 52437 183 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915283|gb|ADCN01000042.1| GENE 1 1 - 223 243 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|154488094|ref|ZP_02029211.1| ## NR: gi|154488094|ref|ZP_02029211.1| hypothetical protein BIFADO_01665 [Bifidobacterium adolescentis L2-32] # 4 69 3 68 138 73 60.0 3e-12 MSRKKKTDGVQDALIPDEITPLMLLALTAKASRMKDAAAAFRIAASKMLDLATKDEYIEK YKNIDVCVQLVVAG >gi|316915283|gb|ADCN01000042.1| GENE 2 233 - 850 523 205 aa, chain - ## HITS:1 COG:ML2684 KEGG:ns NR:ns ## COG: ML2684 COG0629 # Protein_GI_number: 15828449 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Mycobacterium leprae # 1 123 1 119 168 115 47.0 6e-26 MAGETMLTIIGNLARDPELRTLGNGSTVANLTIASSTRQFNRQSNQWEDGDTLFMNCSAW DSQRQKFASNIVATLAKGMRVIASGRLQQRSYQAQDGSQRTVTEMLLEEIGPALTRATAQ VTRVQAGGGYAGGSTYGDPNRGPAQNGWQNRQPQSPAPAQSQAPASPVEPGVQQGDPWAQ TMPATPGSGFGASTDFPSNDSDPEF >gi|316915283|gb|ADCN01000042.1| GENE 3 850 - 1230 444 126 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSETKEKPERSNAADVAESLLLALDAGPNKPSLPVLEAMLAEALKANDVILVRAFAQPPA PPAQSKTSDVEAELADARRELAHEAYGAASMLADGVMDDADWELFDLADEVRGAAVELLR ALDGEA >gi|316915283|gb|ADCN01000042.1| GENE 4 1227 - 1448 276 73 aa, chain - ## HITS:1 COG:no KEGG:Blon_1790 NR:ns ## KEGG: Blon_1790 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 4 68 9 73 76 71 52.0 1e-11 MWCPITDEGMSWPPADLIEEFWDRICDRNSQTANPYIYLLPYAEQVDVDRQNRKVSALVE CASKADYRGGKPN >gi|316915283|gb|ADCN01000042.1| GENE 5 1451 - 1714 393 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAMIPPDIVQDGVAYWKADKVSAYFGGSPTVGTLGVWRYRGEGPKFVKLGGKREHRKRD TRRVAYPVREVIAWGEQNGLQQQTVAA >gi|316915283|gb|ADCN01000042.1| GENE 6 1978 - 2223 214 81 aa, chain - ## HITS:1 COG:no KEGG:Blon_1788 NR:ns ## KEGG: Blon_1788 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 81 1 80 80 103 64.0 2e-21 MNAEDYGQHASGYRRPEPDELSRGFTVRLILWAVVFACCIGWVMSHAGCAHPIGNGITSL MGFGFVPLRLLCLVLSEAGVE >gi|316915283|gb|ADCN01000042.1| GENE 7 2220 - 2408 297 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEKLTIANPEDGNRPLSYQALSHGIDELRLGDMGITDAVWRGPHSELVALARRILDAEA GR >gi|316915283|gb|ADCN01000042.1| GENE 8 2490 - 2774 354 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDNRTKNYVEVDGNVLPGSLRGVIELFDEIVETIKGLKPGERKVVYFELVENKSLDLPGG TIAIALHSESSVSVVVNDDGSDEYKNFQKRVSQK >gi|316915283|gb|ADCN01000042.1| GENE 9 2934 - 3122 75 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIAKSIQAVGFCAKSPCIRFHNHVTIIDFFLIGAFMMNLPHHASHRPIRTATIPALAESE VK >gi|316915283|gb|ADCN01000042.1| GENE 10 3046 - 3660 464 204 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTWLWNLIQGDFAQNPTAWMDLAITVLGIVLSPVAWFTSKCLEGKAAKREAKDAQEKFD AQLEVLKGQLKAANDSVDALRAQVKTAEDSADALRGQLAAQRTQARLAEETASVPKWDIY QVQNLKYAVANENAFDAHDVRVVLSSGKEYELGNISKGSSIGFMFMEKAIMCEDGYADIR ITWSLPGESGERHSVTKPSPQYLH >gi|316915283|gb|ADCN01000042.1| GENE 11 3587 - 3868 276 93 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNDISVVELRSMNNDQIHRFAALVNEPENTLANMSDDPVRIETYPGIGPQIISYRKIVR IDDNVLAALFSADTEETASSPNDAPRIHPEGTR >gi|316915283|gb|ADCN01000042.1| GENE 12 3868 - 4122 269 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNVNAWVGNRVDEKIREKGMTKRFVSEKSGMPYSSLNSKLKGYRGFDLDDILALAEAIG ESPSELLPPQFTKDVPALAEGEVK >gi|316915283|gb|ADCN01000042.1| GENE 13 4405 - 4650 87 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEALINTCELLGVDPREVFNAAYRRLIEEMGECKTALAGERLVDDEQARIDETLKKLHRG DMDIVALEDEHKFDGDGDEPA >gi|316915283|gb|ADCN01000042.1| GENE 14 4693 - 5757 600 354 aa, chain + ## HITS:1 COG:NMA0427 KEGG:ns NR:ns ## COG: NMA0427 COG0270 # Protein_GI_number: 15793432 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 7 342 6 346 351 227 39.0 3e-59 MRTRTVISAIDLFCGTGGLSLGLKQGGVRVVAGIDNAASCAYPYEENIKAKFVRESVREV TGDELKRLWGRSSVRLLAGCAPCQPFSSQRRGVDTSQEQSWPLLLEFGRLVRETTPDYVT MENVPRLQKSEVFEEFVSILRETGYQVAHSVLFGPDYGLPQRRRRLVLLAGRGTDVPIPS PTVDKDSYRTVSDAIQDLPPLSAGEHDPDDRLHFARNLTPLNLRRIQASKPGGTWKDWPE ELLLECQKKTTGSTFKSFYGRMEWDKPSPTITTQSYNPGTGRFTHPEQDRTLTLREASRL QGFPDSFMFTKPGEPITFTNVGRLIGNAVPPVFGKAIARQIVAVEKEKRNQDNE >gi|316915283|gb|ADCN01000042.1| GENE 15 5750 - 7804 782 684 aa, chain + ## HITS:1 COG:no KEGG:Blon_1146 NR:ns ## KEGG: Blon_1146 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 684 1 684 684 1265 99.0 0 MNDKYTLTVDIATVDSLGRNLYSNAAAVLSEFVANAWDADATRVEIQFDPNNSISILDNG CGMTDGELNSRFLTVGYRKRVVEGMASPRFKRPYMGRKGIGKLSAFSLADKMVVSSRKQD GPSHGFTIDAKEMEKSIRNTDPAGREYHPEPLADAAAEFGDRANGTKIVLSDLRVKRVSI TERALRRRLARRFDVLGLANLPEDQGRFVIEINGEPVTYEDRGDLQKLQYIWYLGDYELP DGVQVSAEAENRIKDTSIPGHDDWRISGWIGSVAKPADRVFEADDESMKNIIVLARKRPI QEGLLDHLDFDKHFASYVTGQIQADFLDQDDQEDIATSDRQRLVEDDERVRAFNAKMKDI FNAASDKWSELRSDTTTKALYESVPEVREWITSLPSDRRRPAQKMISRISSIDGLNDDDR NSLYQSSIAAFYKLQQNDEIDKLKDVDTMSEAQLFTILSSYARFEELEYGQIIRTRLSVI GKLEDLLDHNELENRTRDFIAENPWLLDPSWERATEDLVKEQSFKRIAKEQFNLDFSDDA ADDRLDIKYLDGGGRQVIVEFKRYGRKVKISELTLQIEKYARAMTRLLQQADARAGSGSH AYTNDSGIDARVNVIIIVKHVYSDIKDEIMPVKAANDRVRIFNARFLYFSDMVEKSKERY QEFTENPAQNDLAAKAIHALDKIS >gi|316915283|gb|ADCN01000042.1| GENE 16 7849 - 8001 70 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMSARLLISSSLSYGQMRMALYGFAPGLTVASALLPRRLDGLYRRERTRS >gi|316915283|gb|ADCN01000042.1| GENE 17 8490 - 8756 464 88 aa, chain + ## HITS:1 COG:no KEGG:Blon_1147 NR:ns ## KEGG: Blon_1147 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 88 142 229 229 135 100.0 7e-31 MEATISGDTIEVNWIGTDAKSLYWKGTYQAPTEAGDWKWTSQGDTETMAQSLLASQDATK DFTYSEADGVSWETTALGTTITVKTTKQ >gi|316915283|gb|ADCN01000042.1| GENE 18 8875 - 9411 205 178 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|224282978|ref|ZP_03646300.1| ## NR: gi|224282978|ref|ZP_03646300.1| hypothetical protein BbifN4_04035 [Bifidobacterium bifidum NCIMB 41171] # 94 177 1 84 84 83 46.0 6e-15 MDNEQQSNPEGHDEGRANSSDSQGGAEVVHAGDSSTAPDESLGNGGRQPAQSDGQGIDLN AIAIAARSGPLPSVEEYAGYERVLPGAADRILAMAEKSLDVEISDRKAATAMEAADHKAE NLSMLITSVAFSFLPWMAFGAAIVCAAFGNNVGTFIGSIVGVFSAGPQLIDAVKRKRK >gi|316915283|gb|ADCN01000042.1| GENE 19 9489 - 10652 1101 387 aa, chain + ## HITS:1 COG:Rv3751 KEGG:ns NR:ns ## COG: Rv3751 COG0582 # Protein_GI_number: 15610887 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Mycobacterium tuberculosis H37Rv # 309 362 10 63 71 83 75.0 6e-16 MANVTRYKTSKGENRYRKPDSTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKR RVGDLYEQWLKEKWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIAS AGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFADE CSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGT PKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVCL GWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDVAR LLDAAVQVETGVEECGQNVGKNVLEHA >gi|316915283|gb|ADCN01000042.1| GENE 20 10775 - 11566 834 263 aa, chain - ## HITS:1 COG:Cgl2483 KEGG:ns NR:ns ## COG: Cgl2483 COG3001 # Protein_GI_number: 19553733 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Corynebacterium glutamicum # 19 263 17 246 249 141 39.0 1e-33 MATYRKSRAFAPEGFFECEGRGLEWLGAAHAQDGPRVVQVYGWGKDYLDIERVGSASPTP QAARAFGAALAHMHDAGAEYFGSAPDGYNGTCYFGPLQDPVKMDTGEWTDPISYFADGRL RPMVNLGVRRGELDKRDVELTERVIEALPDLMGRAAADKPARIHGDLWSGNVMWTADSGQ SEAVLIDPAAHGGHREEDLAMLHLFGMSYLSEITEGYQSVHPLKAGWQERITLWQLYPIA GHCVFFGGGYVNEYRSMCRSLLK >gi|316915283|gb|ADCN01000042.1| GENE 21 11711 - 12595 1276 294 aa, chain + ## HITS:1 COG:AGc1833 KEGG:ns NR:ns ## COG: AGc1833 COG1968 # Protein_GI_number: 15888341 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 285 3 276 278 233 49.0 4e-61 MNFFQAIILGIVQALTEYLPVSSSAHIRIFGDLMLGSDPGAAFTAIIQIGTELAVILYFR HDIINILTHWFSCLFGKNGKDWKARMGRGDNYATLGWNIIVGSIPIIILGFTLQNVIETS LRNLWITVTVLLVFGILLWMVDAKARQNKTMNDMTYRDAFLFGLGQSMALIPGVSRSGGT ITVGRALGYTREAAVRLSFLMAIPAVFGSGLLEAIKAVKNYKTDAMFPGWGPTLVAMVIS FVLGYIVIIGFLKFVSNFSYKAFAIYRIGLAVVVALLLIVGVLPAIDPSVVAAA >gi|316915283|gb|ADCN01000042.1| GENE 22 12750 - 13607 782 285 aa, chain - ## HITS:1 COG:no KEGG:BL0722 NR:ns ## KEGG: BL0722 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 285 1 285 285 587 99.0 1e-166 MNSSYSRGMSEAAKDTGAVLIAAFEGWNDACQAATNVVRHLVKRYESREIRHIKCDDFYD YQVARPMLCHVSGRTNLIWPQTTFYDITLDAGKRIYAQIAPEPNYRWKEYCSQSLAIADE LDVNRIITLGSMFSDCPHTRPLPIAVSDGDCQCEGDRSYNGPVGIPTVLDVAAAQQGFAH SSMWVSIPQYLGSDECSAGTIRLLDALGKYIGFIFDTADLKQKAEQWKAQASILVRCNDQ LHDYVEHLEHDYDLQQKAEAEASLGAPQAEQLVKEAEAFLRQMGN >gi|316915283|gb|ADCN01000042.1| GENE 23 13643 - 13747 61 34 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLQATRRSWTNYTHVCIVNTRASAGRPRQGNTR >gi|316915283|gb|ADCN01000042.1| GENE 24 14403 - 16436 3321 677 aa, chain + ## HITS:1 COG:Cgl1631 KEGG:ns NR:ns ## COG: Cgl1631 COG0441 # Protein_GI_number: 19552881 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Corynebacterium glutamicum # 33 674 40 684 686 819 61.0 0 MAQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLNDGDTVDPIAL DSEDGLAIMRHSATHVMAQAVQEVYPNAKLGVGPVIKDGFYYDFQVDQPFTPNDLKDIEK RMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEISEKELSFYD NVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRVYGTAWATKED LKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK DELTSLLTFVLNLLKDFGLTDFYLELSTKDPNKYVGSDEIWEEATNTLAEVAKESNLELV DDPCGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRA LFGSIERFFAVLLEHYAGAFPAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDY SDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIK KRVQVNSADDFNAAVAE >gi|316915283|gb|ADCN01000042.1| GENE 25 16489 - 17073 572 194 aa, chain + ## HITS:1 COG:PAB2301 KEGG:ns NR:ns ## COG: PAB2301 COG0537 # Protein_GI_number: 14520282 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Pyrococcus abyssi # 22 185 21 177 185 166 46.0 3e-41 MTDVRVDNPADFPPQEDTVERLWTPQRMTYVLRNSEDRPTKPKTKECPFCAGPKKSDEDG LIAWRGTHVFAIMNLYPYNVGHLMICPYRHVGFITELDDAELFEFEKATTLAMKVMETVS RPDGYNIGINQGEVAGAGVAAHLHQHVVPRWNGDANFMPIVAQTRTMPILLSDQRDAYAQ AFEQLAPQYHLPLA >gi|316915283|gb|ADCN01000042.1| GENE 26 17212 - 17967 1258 251 aa, chain + ## HITS:1 COG:MT2678 KEGG:ns NR:ns ## COG: MT2678 COG0217 # Protein_GI_number: 15842143 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mycobacterium tuberculosis CDC1551 # 1 251 1 251 251 282 60.0 3e-76 MSGHSKWATTKHKKAAIDAKRGKLFAKLIKNIEIAARLGGGDPDGNPSLYDAIYKAKKAS MPADNIARAVKRGAGAEDGAANYEDIVYEGYAPAGVGLIIECLTDNRNRAAAEVRSTLTK GNGSLATSGSVSFNFERKGQIVVPSEGVDFDKLFETAAEAGAEDVTDDGEVFTVVTGPSD LFTVRKALQDAGFDYDSADQVMQPKNEVELSLEDARKVSKLIDNLDDLDDVQNIYSNWTA SDEVMAQLDEE >gi|316915283|gb|ADCN01000042.1| GENE 27 17973 - 18557 546 194 aa, chain + ## HITS:1 COG:MT2671 KEGG:ns NR:ns ## COG: MT2671 COG0817 # Protein_GI_number: 15842134 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 185 1 188 188 139 51.0 2e-33 MIILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRF APDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQK IQVERMVTRILNLTKMPTPADAADALALAICHALRPAGALQGGEREQHLTAAQRQWAEAA QKSTRRRINHDRGM >gi|316915283|gb|ADCN01000042.1| GENE 28 18615 - 19241 763 208 aa, chain + ## HITS:1 COG:NMA2221 KEGG:ns NR:ns ## COG: NMA2221 COG0632 # Protein_GI_number: 15795090 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Neisseria meningitidis Z2491 # 1 175 1 172 194 109 38.0 3e-24 MIGMLTGRVESVETDTALIDVGGVGYEVRMSATDLSRLHAGQDTRVFTYMNLSQDAITLH GFLDRDAKKTFLQLIKVSGIGPKVAQSLLSTLTPSQLAHAIADNDATALAKAPGLGKKGA QKIILELKGSIDLSQIEGASAQAAISKSPVDTGTEQVVEGLISLGWRQQDAQQAVAEACA ENDIPTPLATDDVPRVLRLALALMDRGR >gi|316915283|gb|ADCN01000042.1| GENE 29 19241 - 20305 1109 354 aa, chain + ## HITS:1 COG:MT2669 KEGG:ns NR:ns ## COG: MT2669 COG2255 # Protein_GI_number: 15842132 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Mycobacterium tuberculosis CDC1551 # 16 346 3 333 344 377 61.0 1e-104 MSETTDYGASNTGANEESLRMVSSQPIGNEPVSDEELRPHVLEGFIGQPRLKAQLQLFLD AARKRDVPPDHILLAGPPGLGKTTLAMIVANELEVPIRVTSGPAVQHAGDLASILSSLDV GEVLFIDEIHRLPRAAEELLYIAMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGM LPSPLRARFGFTAHLDFYPHEELEKLIERSANVLGVNLDAGSAHELALRSRGTPRIANRL LRRVRDWAIVHDLIVVRPDDVKEALALYQIDSEGLDRLDIAVLNAIVRNFNGGPVGLNNL AAMVGEESETVETVCEPYLVREGFMIRTPKGRVATEKAWQHLGITPKDDVSKLF >gi|316915283|gb|ADCN01000042.1| GENE 30 20370 - 20807 800 145 aa, chain + ## HITS:1 COG:no KEGG:BLD_0454 NR:ns ## KEGG: BLD_0454 # Name: yajC # Def: preprotein translocase subunit # Organism: B.longum_DJO10A # Pathway: Protein export [PATH:blj03060]; Bacterial secretion system [PATH:blj03070] # 1 145 1 145 145 226 100.0 2e-58 MEQQYIMLIVIVVVFGGMMWWQSKKAKQQQQEKQDFRRNLQPGTEVITIGQVIGKVVEVD EQYEEIVIDSEGSKLRFGFNAIAREYTRPAYVSDDEVDENGNPLPDEDTEAPANDEAGQV PIEASVVSEEDTADETGDDNETKTK >gi|316915283|gb|ADCN01000042.1| GENE 31 20871 - 21452 723 193 aa, chain + ## HITS:1 COG:sll1430 KEGG:ns NR:ns ## COG: sll1430 COG0503 # Protein_GI_number: 16330593 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Synechocystis # 22 189 3 170 172 147 48.0 1e-35 MAQSDITIDALSKVGQQDAEYLVSLVRSVPGFPKEGIIFRDFMPVLADPKGLKILLKALE EALPVSPSEFDSIAGLESRGFLFGPAMAAHLGKGFIAVRKAGKLPPETIGESYDLEYGTA SVEIETDAVQAGKRVLIVDDLIATGGTAKAATDLIEKAGGTVVGFSFVMRLDGLDGLDKL DGKPSSSLIAMPA >gi|316915283|gb|ADCN01000042.1| GENE 32 21549 - 22751 1667 400 aa, chain + ## HITS:1 COG:ML0155 KEGG:ns NR:ns ## COG: ML0155 COG0045 # Protein_GI_number: 15826978 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Mycobacterium leprae # 1 390 1 391 393 332 47.0 9e-91 MDLYEYQARQLLEEQDIPTPDAIFAQNSHEVAEAADKIGYPCVIKAQVKIGHRGQAGGVK IAHNRDEAILESESILPMTIHGHKVSGVLVAEAKNILHEYYVSISVDRTSRDFDVLATAN GGTEVEEIAKEHPEAVKRLHIDALGDFDLAAATEMAQSIGFYHADVDQAAQILLKMWRCF KDNDATLVEINPLAKIGDPDDESTKQLSALDAKISLDDNASFRHDGWARFVDPIVPDPFE QRAREHGLHYVHLHGEVGVIGNGAGLVMSSLDAVSGAGEEQGTNIKPANFLDIGGGASAA VMAESLEIVLSDPQVESVFINVYGGITSCVEVANGILEAVAKLGGSKPIVVRFDGNAAAE GLHILASANNPNIHVSETMEGAAAKAAQLAGEATQSKEVR >gi|316915283|gb|ADCN01000042.1| GENE 33 22751 - 23662 1467 303 aa, chain + ## HITS:1 COG:ML0156 KEGG:ns NR:ns ## COG: ML0156 COG0074 # Protein_GI_number: 15826979 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Mycobacterium leprae # 2 297 3 297 300 310 61.0 3e-84 MLFIEDGAPVIVQGMTGHQGMTHTARMLKAGTNIVGGVNPRKAGTSVTFPGAKNGADADI PVFATCGEAREATGAKASVVFVPPKFAKSAVVEAVEAGIELIVVITEGIPVADSAYFVEL ALKKGVRIIGPNCPGLITLGNPGVNLGIIPDGIVGRGPLGLVSKSGTLTYQLMGELSDIG FTACLGAGGDPIVGTTLLEALQAFEADPDTKAVMMIGEIGGFAEQDAAAWAKEHMTKPVV AYIAGFTAPEGKQMGHAGAIVSGGKGTAQDKKNALEAAGIPVGKTPGQAAEIMRDVLAKA NID >gi|316915283|gb|ADCN01000042.1| GENE 34 23736 - 25061 833 441 aa, chain + ## HITS:1 COG:no KEGG:BL0734 NR:ns ## KEGG: BL0734 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 441 19 459 459 741 99.0 0 MAIYAVALGCYTALMLLVVSMEEGGDNLTVGTTSLTQAVVLLSEGSGFRTDSFTLTITPL LLTILLIWLINALIMRIKAYGPHAYVAGLIVWLGLNEAFRQSVHLGLVDDQWLVLLKAAI VFSIGFLCAAVPESAKMRAFRDWTRKQVPADIRHCLKIGVALAVAILSIYLAIGLITVIV WSVRNHAAVVSLFELSGMETGSRILTTVAMLIWLPNVMLWAVSWLFGGGFAIGDLASFTL WLGQSKELPAIPVFGILPEPVSSELWRTVALNAPLAIAALVGLLAVFLPQGFACRPLNVR NTSTRGPVLVSLIYSAGAFCLSAMLISLASTLLFALSNGSLGDHRLAHIGVDVMASTRVV GHSTALGLTAAWLLALIGIALVFPIVWLVERIKDSRTTATTSKTATVHQARFLASQPQES KEEQDDKHEPTDTSSTGLGLS >gi|316915283|gb|ADCN01000042.1| GENE 35 25009 - 26646 2357 545 aa, chain + ## HITS:1 COG:MT0984 KEGG:ns NR:ns ## COG: MT0984 COG0138 # Protein_GI_number: 15840381 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Mycobacterium tuberculosis CDC1551 # 6 545 8 523 523 563 57.0 1e-160 MTNTNRPIRRALVSVFHKEGIEVLAEAFVKAGTEVVSTGSTAKKLAELGVKVTEVSDVTG FPECLDGRVKTLHPYIHAGILADMTNPEHAKQLEEFDIKPFDLVVVNLYPFADTVRSGAN EADTIEKIDIGGPSMVRGAAKNHATVAIVTDPADYALVASRVADGTGFSLDERKWLAAKA FAHTAAYDATINEWTAKHWPKPASLDAVEVDKDDQGTEVDSAKFPAQFTRTWDRAHTLRY GENSHQQAALYIDPLNQTGFAHAEQLGGKPMSYNNYVDADAAWRTVWDMAPAIAVAVVKH NNPCGLAIGATAAEAHKKAHACDPMSAYGGVIACNSKVTLEMAESVRPIFTEVIVAPDYE PAALELLQTKKKNLRILEVAEPPKGHEAIRQIDGGLLVQDTDLINAVGDDPDAWKLVAGE AADADTLKDLVFAWRAIRCVKSNAILLAHDQATVGIGMGQVNRVDSCHLAVERANTLADG ADRATGAVAASDAFFPFADGAQVLIDAGVKAIVQPGGSIRDEEVIEAAKKAGVTMYLTGT RHFFH >gi|316915283|gb|ADCN01000042.1| GENE 36 26792 - 27094 239 100 aa, chain + ## HITS:1 COG:no KEGG:BLD_0460 NR:ns ## KEGG: BLD_0460 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 100 1 100 100 176 99.0 2e-43 MHNHPYVSEAHEGKPWFEWCVLGVVAVITLLVAFGYTMAATVILAVTAIITGLVRLILQD RSPWKVRSVAFDSFIGIALGIGLLITYFSFFGLFGNIFFR >gi|316915283|gb|ADCN01000042.1| GENE 37 26993 - 27961 1190 322 aa, chain - ## HITS:1 COG:BMEI0070 KEGG:ns NR:ns ## COG: BMEI0070 COG0580 # Protein_GI_number: 17986354 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Brucella melitensis # 12 244 4 220 228 75 29.0 2e-13 MEETKQQPLALRVCAELAGSFLLCFAIYAFSTWGSAVYGINIVFFALATGLAYAAVTAIF SRVSGGQLNPAITVASVLVSKTKILDGILYVIAQVIGAIAAGFAVVKLLPTSEQVAAKVW LTPAVNGFENGSVSYSLLTQYGITFSITLAIVVEVVASLIVVATAMSSLGDHGESSDRHV IAMGLAYGLATAISYPVTGAGLNPARSTGIALAAMNEGLTQNPLQQLWVFWISPVLAAAV VALVMIIAQMMTTPKVPAAADLPQTDADANADTLDDGEFFDQAASSDGDSAEKDVAEESK EAEVGNQQADSQGDADEGVERH >gi|316915283|gb|ADCN01000042.1| GENE 38 28157 - 28927 1014 256 aa, chain + ## HITS:1 COG:MT1751.1 KEGG:ns NR:ns ## COG: MT1751.1 COG1187 # Protein_GI_number: 15841171 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Mycobacterium tuberculosis CDC1551 # 18 256 14 254 254 231 52.0 1e-60 MPNAYSRAAKAQDDSNSIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDP HKQQVRVDGSRVRVNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLD YDSEGLILMTNDGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKL DHCAIIDSSRDHTMVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLGDLKPGSYR VLSQTEVRSLSKEVGL >gi|316915283|gb|ADCN01000042.1| GENE 39 28924 - 31053 2664 709 aa, chain + ## HITS:1 COG:Cgl1394 KEGG:ns NR:ns ## COG: Cgl1394 COG1160 # Protein_GI_number: 19552644 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Corynebacterium glutamicum # 275 708 107 538 543 465 52.0 1e-130 MIRVAIDGPAGVGKSSTSKALAKYFGYAYLDTGAMYRACAWWCLKQGIDLDAETVDERVI TEAVGEFFTGDHFDISVDPDNPRVFADDEDISEAIRSSEVSSHVSKVSNVIPVRNVLIAA QRAYIAREASADSFSGGLGIVAEGRDITTVVSPDAEVRVLLTAREEVRQARRTGQAVKGV GAEDVAARDKADSKVTSFLTAADGVTTIDNSDLDFAHTLDLLIGLVEDAIENQEYEQYAA NLEGYELDEGDEDLISGRGFTEGARKAGPKPVGVLAVVGRPNVGKSSLVNRILGRRAAVV EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIESAIASQAQVAVTLADAVVFVVD GQVGMTTTDERIVKMLRAAGKPVVLAVNKIDDQASEYLAAEFWKLGLGEPYSISAMHGRG VGDLLDVALDKLKQAEKTSGYLTPSGLRRVALVGRPNVGKSSLLNQLAREERAVVNDLAG TTRDPVDEIVNIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERCELALILFDAS QPVSDQDLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTEFDRVMWAERVNLSA KTGWHTNRLTRAMDKALESWDQRIPTGKLNAFLGKIQAAHPHPLRGGKQPRILFATQAST RPPRFVIFATGFLEHGYRRYIERSLREEFGFEGTPIQISVNIREKKKRK >gi|316915283|gb|ADCN01000042.1| GENE 40 31408 - 32937 1774 509 aa, chain + ## HITS:1 COG:ECU03g0280 KEGG:ns NR:ns ## COG: ECU03g0280 COG4284 # Protein_GI_number: 19172988 # Func_class: G Carbohydrate transport and metabolism # Function: UDP-glucose pyrophosphorylase # Organism: Encephalitozoon_cuniculi # 34 498 37 478 492 219 31.0 1e-56 MTEINDKAQLDIAAADDTDAVTSDTPEETVNTPEVDETFELSAAKMREHGMSETAINQFH HLYDVWRHEEASSWIREDDIEPLGHVPSFHDVYETINHDKAVDAFAKTAFLKLNGGLGTS MGLDKAKSLLPVRRHKAKQMRFIDIIIGQVLIARTRLNVELPLTFMNSFHTSADTMKVLK HHRKFSQHDVPMEIIQHQEPKLVAATGEPVSYPANPELEWCPPGHGDLFSTIWESGLLDV LEERGFKYLFISNSDNLGARPSRTLAQHFENTGAPFMAEVAIRTKADRKGGHIVRDKATG RLILREMSQVHPDDKEAAQDITKHPYFNTNSIWVRIDALKDKLAECDGVLPLPVIRNKKT VNPTDPDSEQVIQLETAMGAAIGLFNGSICVQVDRMRFLPVKTTNDLFIMRSDRFHLTDT YEMEDGNYIFPNVELDPRYYKNIRDFDERFPYAVPSLAAANSVSIQGDWTFGRDVMMFAD AKLEDKGEPSYVPNGEYIGPQGIEPDDWV >gi|316915283|gb|ADCN01000042.1| GENE 41 33077 - 34990 2225 637 aa, chain + ## HITS:1 COG:no KEGG:BLD_0465 NR:ns ## KEGG: BLD_0465 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 637 1 637 637 1201 100.0 0 MAEGTSGRRRFSDKWGKHELDVLAVLSSAFPQWLTSRQIAQRVKAYADSYGELADQAAKA AFAKQFQRDRAKLAAMGIAIESRQPEYSSKSEGQDFASYRLQLGDEPRIRLMFEPEDMPV LAAANYLARSMSISSEPDQSQLAQHASRTTPRVPQTPIPGLGLDSIAPGLGTQPIPDSLV KVIDSRRFAATVDVDGEHLNVAYTDSDDLAMFVLEHPGATIVSPQEAVDAYHRRLHAASR FTLADESASPVSASVVSPSISRDVREPGDPESIKAQNKKNGPAFQTGSEVDRRLRLMLFL SAHLGEEFSMSELAERFIGKPKNDDELKKFVNIIHKDINTLTTVSDDGEMAGSQFFDIDW PLLDAEGIVSATNSLGLERLAGISPQYLSMLTASVSYLAHSPLLPDKQRGQAESLYERLR RHVSPGQTPWLSLTGYELEPRSFSIVKRAINTDSLLDMEYSDGTGSTRRKLVAPAKIFID EGVYYAAVYTDVGSAAPKDKKAYVSKDKTIDKANGKPRIWQVLRLARIEKAELVKPTKQI NIPNMPVSELRKWSFDNGTDAVFITDQRDLAFIKTLPGATVEQCGAGEKVHLTVSSDSWF VAFCIAHARHITAVAPETLRTMIVARAERELSISENK >gi|316915283|gb|ADCN01000042.1| GENE 42 35001 - 35318 432 105 aa, chain + ## HITS:1 COG:no KEGG:BLD_0466 NR:ns ## KEGG: BLD_0466 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 105 1 105 105 193 99.0 1e-48 MPWWIWLILALFMLAMIVAGLIYAALHGIRALKDMSDIGGQLGERVAAMGESGTSADTSE PPLFTQPFSVAQNRYAEAHADVIRSKAAKRERHTQAWARWKRFNN >gi|316915283|gb|ADCN01000042.1| GENE 43 35331 - 37922 2676 863 aa, chain + ## HITS:1 COG:MT2153 KEGG:ns NR:ns ## COG: MT2153 COG4581 # Protein_GI_number: 15841583 # Func_class: L Replication, recombination and repair # Function: Superfamily II RNA helicase # Organism: Mycobacterium tuberculosis CDC1551 # 38 584 9 534 906 493 50.0 1e-139 MARHQHHKGNADSQTLSPSQRYASFQKVQRHRASAAARFAESLPFELDDFQTEANDALEA GSNVLVAAPTGAGKTVVADFAIYLAQERNVKAFYTTPIKALSNQKYHDLVDVYGPDKVGL LTGDTSINSEADIVVMTTEVLRNMLYERSTTLNALRYVILDEVHYLADRFRGPVWEEVII HLPKTVKIVGLSATVSNVEDFSNWIASVRGDTKLVISEHRPVPLEQHVIVQADEHTEPEV LDLYRRDGNGEQTTKLNAELINRLDQLDRKAARRRGEERPDKRKGFGRGRGGKGAKGHAP KAERHTPRRWAVVDELNFLGMLPGIYFIFSRNGCDQAVEQCINAGLELTTDEEVTKIRRI VDEMVEGQLTQEDLKALQFSKFRFALEEGFASHHAGMIALFRQIVERLFEEGLVKMVFAT ETLALGINMPARCVVVEKLEKFDGTGHVGLTPGEFTQLTGRAGRRGIDTIGHAIVVDHHG FVPATAAALSSKRVYPLHSSFRPTFNMAVNLLNSSDYETAHVTLDQSFAQWEANESAWQL ESQINTLKNALAGYEQAFACEHGDFKQFMTLRMELSDIEKEGRRKLKHEVFLTDQERSRA FQNLDQRIRDLRKAEHEHPCRNCPDLQQHLKWGHRWARETRELQRVTDCYDSRTGSVARQ FDRICDILTGLGYLERHVNAAGHIDMTLTEKGSLLRRIYSEHDLELCEALLAGTFDKLDA NGLAAVLSSLVYEARRGGDGEPRHYPGGISGPIAIASSKLKGICEDIDILCEDHGLDEMQ RPDFGILDIMYEWADGGSLGSCLYGTDMTGGDFVRTAKRLADVLQQIAVAQPLPFDGGER LAGLAHEAADRVNRGVVAYSGVD >gi|316915283|gb|ADCN01000042.1| GENE 44 38038 - 38385 443 115 aa, chain + ## HITS:1 COG:no KEGG:BLD_0468 NR:ns ## KEGG: BLD_0468 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 115 1 115 115 216 100.0 3e-55 MAERSLRGMSIGAKSLESDDNVDFAARNDVAYVCPKGHRTILPFAEGAEIPDEWECRCGS VAHREGDADREGDEISKPTRTHWDMLLERRSEEELATLLEKRLQMHRDGWIPDYE >gi|316915283|gb|ADCN01000042.1| GENE 45 38517 - 39236 896 239 aa, chain + ## HITS:1 COG:all2681 KEGG:ns NR:ns ## COG: all2681 COG0546 # Protein_GI_number: 17230173 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Nostoc sp. PCC 7120 # 8 228 5 210 215 117 34.0 2e-26 MAQHPMKVVLLDLDGTLTKSDGGIIASVVKTFEELGRPVPDDAELHRFIGPAIIESLRRN HVPEDELDRAVTIYRSYYADRAVFDDPNEPGNKVPGRLVNVVFPGIREQLLKLRADGYYL ALASCKPEYQCVPICEHFHLTELLDGIYGASRDNSRLDKDQVIRYCFDKIGFDAAAGDKA VMIGDRYTDIDGAHACNLDAIGCRWGYAPAGEMEEHGAYEIIEKPEQIEEAVNRYFQTH >gi|316915283|gb|ADCN01000042.1| GENE 46 39263 - 39514 287 83 aa, chain + ## HITS:1 COG:no KEGG:BLD_0470 NR:ns ## KEGG: BLD_0470 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 83 2 84 84 130 100.0 2e-29 MGCDGACAAGFDLVFIGLPLLSLYEIPMLIWFIWRAFHWKRDDKDWLKGTAILAIAVVAP VLLWLSAWYAPVLLWLSALVCVD >gi|316915283|gb|ADCN01000042.1| GENE 47 39648 - 39887 286 79 aa, chain - ## HITS:1 COG:no KEGG:BLD_0471 NR:ns ## KEGG: BLD_0471 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 79 57 135 135 145 100.0 4e-34 MSFAAALIPFPVLTFTADLMDARMLAFYDHAQLPGAIIIFALVLLELIAMYLQARNASET EMDKRLGVASHRNKDDVAK >gi|316915283|gb|ADCN01000042.1| GENE 48 40186 - 40818 670 210 aa, chain - ## HITS:1 COG:MT1879 KEGG:ns NR:ns ## COG: MT1879 COG0789 # Protein_GI_number: 15841300 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mycobacterium tuberculosis CDC1551 # 23 156 48 181 225 141 49.0 1e-33 MGQTGLHLHVSLEDRQNLNADAIQGELFSNVDTEEIKRGYRGTVASKVAGITYRQLDYWA RKQIVEPSITPSHGSGSRRLYSFKDVVILAVSKKLLDAGVNLQNVTAAIGFLTQRSTDQL ANVTIMCDGQNVHECTTSEQMLELLQSGKAVFAVSVGSLWHQIETALEQEEYVDLEAKPL TIATGRPIDELTAMRMRKKLEAQRLQRATA >gi|316915283|gb|ADCN01000042.1| GENE 49 40919 - 41362 483 147 aa, chain - ## HITS:1 COG:MT1875 KEGG:ns NR:ns ## COG: MT1875 COG1716 # Protein_GI_number: 15841297 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Mycobacterium tuberculosis CDC1551 # 33 140 41 148 162 115 57.0 2e-26 MTNPIPSAGETTIIGLPAINVLPVTTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGS RYLLDEDEITVGRDPRADILLDDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQ ATLKNGDEIMIGKFRLVFFTKSAIISQ >gi|316915283|gb|ADCN01000042.1| GENE 50 41369 - 42190 704 273 aa, chain - ## HITS:1 COG:MT1873 KEGG:ns NR:ns ## COG: MT1873 COG3879 # Protein_GI_number: 15841295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 49 273 64 292 292 102 33.0 6e-22 MARKAQSDNMLEKMRDQHAQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLISSILIAL MCALLGFAYMSQINNTKSTYETMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAA NEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGSTTKVDASIMFNLIEELRNAGA EVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYKVKAIGNPQELSNAVDIAGGVGAQLQ VKYGSNVNVQPSDSIIIDEVREATQNQYAKTVE >gi|316915283|gb|ADCN01000042.1| GENE 51 42206 - 42538 519 110 aa, chain - ## HITS:1 COG:MT1872 KEGG:ns NR:ns ## COG: MT1872 COG3856 # Protein_GI_number: 15841294 # Func_class: S Function unknown # Function: Uncharacterized conserved protein (small basic protein) # Organism: Mycobacterium tuberculosis CDC1551 # 1 108 12 119 121 93 56.0 7e-20 MAAVLGLIIGVVIGVFVKPDIPIIVQPYLPIMVVAALDALLGAARAYFERSFSDRVFVIS FLANVVTATLLVFLGNQLGVGSQLQTAVIVVLGIRIFSNVSAIRRFIFRG >gi|316915283|gb|ADCN01000042.1| GENE 52 42538 - 43515 891 325 aa, chain - ## HITS:1 COG:MT1871 KEGG:ns NR:ns ## COG: MT1871 COG3879 # Protein_GI_number: 15841293 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 103 323 98 306 309 84 32.0 3e-16 MALEATAPVSFPVPKENEPVRRRAVFSHSVRGAESHHALSPDDAAAIRARRRRKTNDDSL QLIDDLVNRPMDPMFSDSRLVHEHRSTFSIWFNRIVVFIICVGVGFAYSLFVQQLQSDPR KQVRQTLATQLENRNSQIDELTTDVNNLRSQVDEQSKKISGSVKSDTLIQDEMVNGATVV EGEGITMTLADPIAASQSDQSSSTRVGTSTNIRVITDLDLQQLVSLMFQNGAEAIAINGN RLGAQTSIRKAGGHILIGMIAIQSPYTIEAIGDKSALAEAMGKKKLASLYDSFKEAGIYP QVSKSNSITLEAAVTGEVKYAERNE >gi|316915283|gb|ADCN01000042.1| GENE 53 43505 - 44122 833 205 aa, chain - ## HITS:1 COG:MT1870 KEGG:ns NR:ns ## COG: MT1870 COG0558 # Protein_GI_number: 15841292 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Mycobacterium tuberculosis CDC1551 # 19 197 11 189 209 95 33.0 6e-20 MTNQKVNTRYSPEARDIYFTVPNLISALRIISIPFISVLISKHEMIAALALIAISSASDG LDGIIARRFNQVSKIGQILDPIADRLLIFCSILALSVAGIIPWWMLIIVGLRDLWMAIQV LWLAQYGYGPLPVHFVGKAGTALLMISIVSLIFADLGTNTFFHLLYIAALAAGIWGIAMY WLAGYIYTEQGIRLLRKELGEKYGA >gi|316915283|gb|ADCN01000042.1| GENE 54 44136 - 44987 1202 283 aa, chain - ## HITS:1 COG:MT2181 KEGG:ns NR:ns ## COG: MT2181 COG0040 # Protein_GI_number: 15841613 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Mycobacterium tuberculosis CDC1551 # 1 282 1 283 284 276 52.0 5e-74 MLRIAVPNKGMLSEPAWNMLAEAGYRLRTNPRQLVVQDPDNGIELFYLRPLDIAVYVGRG AIDVGITGQDLLKNSGTAALEHMPLGFGTSTFRFAAPNESPITTLEDIQGKRVATTFDKL VHDYLVEHGIQAETIHLDGAVESSVQLGVADLIADVVSTGTTLRNAGLRVFAEPLMHSEA CLIRSPRLNEQDSRLAVLTRRLQGVLTAHQYVLMDYDIPISKVAAAVAVTPGFESPTISP LHDKQWNAVRVMVPKAKVNQLMDDLYEVGARGIIVTALQASRM >gi|316915283|gb|ADCN01000042.1| GENE 55 44999 - 45262 575 87 aa, chain - ## HITS:1 COG:MT2182 KEGG:ns NR:ns ## COG: MT2182 COG0140 # Protein_GI_number: 15841614 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-ATP pyrophosphohydrolase # Organism: Mycobacterium tuberculosis CDC1551 # 1 87 7 93 93 101 60.0 3e-22 MKTFESLFAELSEKAQTRPEGSLTVDELDKGTHFIGKKIIEEAGETWMAAEYEGADRTAE EMSQLLYHVQVMMIKHGLTLEDVYKHL >gi|316915283|gb|ADCN01000042.1| GENE 56 45325 - 45993 1079 222 aa, chain - ## HITS:1 COG:Cgl1560 KEGG:ns NR:ns ## COG: Cgl1560 COG0036 # Protein_GI_number: 19552810 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Corynebacterium glutamicum # 6 217 8 219 219 218 51.0 9e-57 MSNIAIAPSILSADFCNLERDLKAIANADLVHVDVMDHHFVPNLTLGEPIVGRICQVTDL PVDVHLMIEDPDRWAPEYAKLGAASVSFHMGATHAPVRLARQLREMGCKACFAVRPVEPV EPIFDILDEFDMVLIMTVEPGFGGQKFLDNQMAKVRRLRDEITRRGLKTRIQVDGGVSPK TAHIVAEAGADVLVAGSAVYGAENPAQAIDDIRAKAEAAFKA >gi|316915283|gb|ADCN01000042.1| GENE 57 46069 - 47016 1323 315 aa, chain - ## HITS:1 COG:Cgl2037 KEGG:ns NR:ns ## COG: Cgl2037 COG0682 # Protein_GI_number: 19553287 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Corynebacterium glutamicum # 1 281 1 278 316 214 41.0 2e-55 MNLAYIPSPTFSKFEIGPFTIHMYAICILIGICVAVWILATRWKRYGGTFDQILDTTLVT VPCALVGARLYHCITTPADYFPPTGNLVNILKVWEGGMAIFGGISVGTLVAFLWCRHKHY PFAIFADAIAPALPVAQAIGRLGNWFNQELYGWPTTLPWGLKLNDADAIGKSEICYSGAQ CPDYRTTLFHPTFLYEMIWNLIGAALIIYLGHKLADRLKAGQQFAMYLMWYGLGRTWIEN VRINYSTVILGLRTNVWTAIIVFVLGCILFVVLYQYGPDPKAQARGLAAVTADELERQSI EEEQLRQKKQTNRTK >gi|316915283|gb|ADCN01000042.1| GENE 58 47129 - 47998 358 289 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 24 256 6 240 263 142 36 4e-33 MTNEATTPSGQPLGISHKPSKSGAMFTKFKAENKPAFIGYLPYGFPNPDVSLDAFRTMVE HGVDAVEIGLPYSDPVMDGPVIQAAASIALNNGETIKRVFEAVETVANAGGVPLIMSYWN LVYHYGVERFARDFENAGGAGLITPDLIPDEAGEWIEASDRHGLDRIFLVSPDSSTERLE TVARNARGFVYAAARMGVTGERATIDASPELLVERTRQAGAENVCVGIGVSTAEQGAKVG SYADGVIVGSALVHTLLADDNKTARDPKEGLKLLAAKSEELAEGIHNAR >gi|316915283|gb|ADCN01000042.1| GENE 59 48022 - 50109 3307 695 aa, chain - ## HITS:1 COG:MT1647 KEGG:ns NR:ns ## COG: MT1647 COG0133 # Protein_GI_number: 15841065 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Mycobacterium tuberculosis CDC1551 # 282 679 37 422 422 472 62.0 1e-132 MSVLDELVAGALEDQRTRELTVSLEDVKKAALAAPAPIDATRWLKRADGIPVIAEIKRAS PSKGHLSDIPDPAALAREYEKGGASAISVLTEGRKFLGSLDDFDKVRAAVYIPVLRKDFI VTDYQIFEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERARKAG AKVIGINARNLKNLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVG EGVATADNHELAVERLVKAGAQVKASETTPLSEHQGPYWGQFGGRYVPEALITALDELER VYNEAKADPEFHKEFMTLQQRYVGRPSPLTEAPRFSALVKEKTGLDARIFLKREDLNHTG AHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQAL NVARMRMLGAEVVEVTLGDKILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDF QKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPE SGKHAIRFAPGTGQLGMFQGAKSYLLETDEGQTLDTYSISAGLDYASVGPEHAWLKDIGR VNYSWATDEEAMNAFRDLSQTEGIIPAIESSHAVAGAYKAAADLKAKGYDKAVMIVNISG RGDKDMATAGKWFGYLTDDQAAALDVTGAHGNTVA >gi|316915283|gb|ADCN01000042.1| GENE 60 50310 - 51002 522 230 aa, chain + ## HITS:1 COG:BS_yoqW KEGG:ns NR:ns ## COG: BS_yoqW COG2135 # Protein_GI_number: 16079108 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 179 1 180 224 100 33.0 2e-21 MCRRFALDLDWDAVASQFAVDEDDVRVDTLPQPSCNIAPTQNIGVVAQGKDGRRHLTGAY WSLVPRWSASKVLSYPTYNARVESAHVKPAFTESTKSMRAIIPASGYYEWKGRRPFYFHA PHDELLSLAGLYSWWRPSPASPWQLTATIITCPAADEFVKVHDRMPLLAPRNMVASWLDR SVDGAALLDSMREAGTMLSRRLQFHEVAPLNSDGKRLIQPLDSTEPMRLF >gi|316915283|gb|ADCN01000042.1| GENE 61 51132 - 51983 1120 283 aa, chain - ## HITS:1 COG:BH1386 KEGG:ns NR:ns ## COG: BH1386 COG0648 # Protein_GI_number: 15613949 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Bacillus halodurans # 1 283 1 294 298 204 41.0 1e-52 MELYIGSHLSTAGGWNALLESSHEEGGTAFAFFPRSPYGKRSKALDPAGAAAFGARLKAE GYGPLVVHAPYVYNLAGKDEAKRTFAIEALAEDIELLTAIREAGQEVYINIHPGAHVGQG TETGCRLISEGLNQVFERTTGVMVLLETMAGKGTECGRNFEELATIMNGVENKANVGVTF DTCHVLDAGYDLVHDYDGVMRQLDEAIGLARVKAIHVNDSQFGLGSHKDRHANIGQGQLG IPFFTRLVNDPIMAKLPMILETKEQTPATHRDEIELLRGLVQK >gi|316915283|gb|ADCN01000042.1| GENE 62 52086 - 52437 183 117 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 103 1 103 358 177 94.0 1e-43 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLVGAGGRMAGAAAGR Prediction of potential genes in microbial genomes Time: Fri May 13 13:24:54 2011 Seq name: gi|316915236|gb|ADCN01000043.1| Bifidobacterium sp. 12_1_47BFAA cont1.43, whole genome shotgun sequence Length of sequence - 49984 bp Number of predicted genes - 50, with homology - 37 Number of transcription units - 15, operones - 11 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 9 - 515 207 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 581 - 2212 1893 ## BL0697 hypothetical protein 3 1 Op 3 . + CDS 2248 - 2883 1020 ## Blon_1080 hypothetical protein 4 1 Op 4 3/0.000 + CDS 2883 - 6428 4578 ## COG4913 Uncharacterized protein conserved in bacteria 5 1 Op 5 . + CDS 6502 - 7686 389 ## COG4924 Uncharacterized protein conserved in bacteria 6 1 Op 6 . + CDS 7907 - 8419 -12 ## BL0701 hypothetical protein + Term 8474 - 8528 15.2 + Prom 8570 - 8629 3.1 7 2 Op 1 1/0.000 + CDS 8699 - 11719 4110 ## COG0178 Excinuclease ATPase subunit 8 2 Op 2 . + CDS 11869 - 14235 2433 ## COG0322 Nuclease subunit of the excinuclease complex 9 3 Op 1 . + CDS 14344 - 15315 810 ## COG0169 Shikimate 5-dehydrogenase 10 3 Op 2 . + CDS 15315 - 16301 890 ## COG1660 Predicted P-loop-containing kinase 11 3 Op 3 . + CDS 16500 - 17450 1081 ## COG1481 Uncharacterized protein conserved in bacteria + Term 17508 - 17550 9.2 12 4 Op 1 13/0.000 + CDS 17562 - 18824 1878 ## COG0126 3-phosphoglycerate kinase + Term 18834 - 18871 9.1 13 4 Op 2 . + CDS 18881 - 19684 820 ## COG0149 Triosephosphate isomerase 14 4 Op 3 . + CDS 19748 - 19996 446 ## BLD_0434 preprotein translocase subunit SecG + Term 20023 - 20079 11.7 15 5 Op 1 . + CDS 20098 - 21048 1562 ## COG0039 Malate/lactate dehydrogenases 16 5 Op 2 . + CDS 21045 - 21896 1015 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 21902 - 21961 3.4 17 6 Tu 1 . + CDS 22007 - 23563 2214 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 18 7 Tu 1 . - CDS 23692 - 24801 717 ## BLD_0439 hypothetical protein - Prom 24839 - 24898 4.0 19 8 Tu 1 . - CDS 24973 - 26310 1564 ## COG1114 Branched-chain amino acid permeases - Term 26351 - 26392 9.4 20 9 Op 1 13/0.000 - CDS 26440 - 27543 1914 ## COG0176 Transaldolase - Term 27620 - 27653 6.1 21 9 Op 2 . - CDS 27662 - 29770 3396 ## COG0021 Transketolase 22 10 Op 1 3/0.000 + CDS 30145 - 31263 1140 ## COG1420 Transcriptional regulator of heat shock gene 23 10 Op 2 . + CDS 31319 - 32464 1322 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 32482 - 32528 9.0 - Term 32613 - 32640 -0.9 24 11 Op 1 . - CDS 32809 - 33489 375 ## BDP_0599 hypothetical protein 25 11 Op 2 . - CDS 33492 - 33914 531 ## Exig_1375 holin SPP1 family protein 26 11 Op 3 . - CDS 33927 - 34283 448 ## 27 12 Op 1 . + CDS 34583 - 35227 260 ## Sthe_2831 integrase family protein 28 12 Op 2 . + CDS 35100 - 35567 211 ## 29 13 Op 1 . - CDS 35564 - 35713 70 ## 30 13 Op 2 . - CDS 35772 - 36326 379 ## Ccur_02620 hypothetical protein 31 13 Op 3 . - CDS 36337 - 36543 205 ## 32 13 Op 4 . - CDS 36556 - 37206 953 ## BALH_3339 triple helix repeat-containing collagen 33 13 Op 5 . - CDS 37271 - 38110 1149 ## Cbei_3387 hypothetical protein 34 13 Op 6 . - CDS 38127 - 38849 911 ## gi|299146038|ref|ZP_07039106.1| conserved hypothetical protein 35 13 Op 7 . - CDS 38842 - 39156 554 ## 36 13 Op 8 . - CDS 39153 - 39551 400 ## 37 13 Op 9 . - CDS 39551 - 41122 1482 ## Apar_0590 hypothetical protein 38 13 Op 10 . - CDS 41107 - 41952 573 ## Apar_0589 hypothetical protein 39 13 Op 11 . - CDS 41939 - 44665 2871 ## COG5412 Phage-related protein 40 13 Op 12 . - CDS 44716 - 45195 211 ## 41 13 Op 13 . - CDS 45096 - 45470 561 ## - Term 45562 - 45604 2.2 42 14 Op 1 . - CDS 45616 - 46236 869 ## 43 14 Op 2 . - CDS 46280 - 46678 316 ## 44 14 Op 3 . - CDS 46675 - 46920 380 ## 45 14 Op 4 . - CDS 46924 - 47241 273 ## 46 14 Op 5 . - CDS 47241 - 47657 560 ## Blon_1817 hypothetical protein 47 14 Op 6 . - CDS 47670 - 47966 398 ## 48 14 Op 7 . - CDS 47966 - 48862 1501 ## BLD_1155 phage major head protein 49 14 Op 8 . - CDS 48894 - 49424 862 ## BLD_1156 phage helicase + Prom 49542 - 49601 1.8 50 15 Tu 1 . + CDS 49636 - 49984 300 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915236|gb|ADCN01000043.1| GENE 1 9 - 515 207 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 144 176 312 317 84 39 1e-15 GHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVD RTWDNGTEASLHVLVDEALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQD ELDAIVGEINDTPMKLLGYKTPNEVWDEEMAKLQSKQADPKPAVTLTS >gi|316915236|gb|ADCN01000043.1| GENE 2 581 - 2212 1893 543 aa, chain + ## HITS:1 COG:no KEGG:BL0697 NR:ns ## KEGG: BL0697 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 543 1 543 543 970 99.0 0 MADVMRELERLRPVYETGVLRLLLRQNAMLYVSLLRSTFDPLTGELPRETVEERFAQSLS SLADAGEYAPREDQTFAEAAHQILADLTREGEGDYAWLANSHDAASHRFLYRLTARAHRA IEALSRLEDESRALSGAQANSIIMEIEHARMQLTADPGERIKLLNREIKERKHEIKRIQQ GKQHATLSGAQVEDVIAVIHNTLRGVPIDLRELVLDERDNGDALRRRMQAGDISVDENLT RYHDEYRRSFRESDSGRRFEDAFQVIITDEGRQQIDEALRAIAKTPYLAGESGVLLGQIR DELARIYDGIEAVRRQMRVSDEAISRLVRQQTDTRYRTMLTRLNRLYARLNADAKTHMGD ASRPYDTATSDALFAPLPMRPAKSMTRATAPGLSDLAAEAPQSTPVADLRDMVNSGGPRL LRMVSLIRRNPVTVDRSDDRPGATLVDIAASFNRLPESERRESEIVGFLGGLGAVSGNAI ADEPSTDGVGVGVDSDIATEPAPAQRGDTATWHCVSIDGEPRNWITRPVLADMDELSIIV EEG >gi|316915236|gb|ADCN01000043.1| GENE 3 2248 - 2883 1020 211 aa, chain + ## HITS:1 COG:no KEGG:Blon_1080 NR:ns ## KEGG: Blon_1080 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 196 11 206 220 354 99.0 1e-96 MDNANPYALFEGDTGDMPAEARMAAIALKRDRYISGPTYDTVLDNRDAVVRSLNNDLLDL VINERYRIMYATPVAGDDVTLRSLKTRVSLKREEAALLAFLRIRVLEYENVHADPADWLV SFEEIRAALATGAGYLAARNDEEGVAKQIGAIVSAMITYGYLVRLDDEAMYQITPLVPVV LDRELADTWLDVAEHGDGDTEDDDDDEKGAE >gi|316915236|gb|ADCN01000043.1| GENE 4 2883 - 6428 4578 1181 aa, chain + ## HITS:1 COG:Cgl2744 KEGG:ns NR:ns ## COG: Cgl2744 COG4913 # Protein_GI_number: 19553994 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 12 1127 14 1071 1111 161 22.0 9e-39 MQATDVQMIADRWMLESRRLINWGSYEGYHEFRPSTDHKLPVTLLAGASESGKSTLVDAQ ISLLYPTGTPFNKASNSGRSERSDYTYLRGMVGVGSTETGDEPLYLRGRDENGAPQPVWG AIVDTYRNQTTGQVLSCAKFLYLMPGDGRGDVRRQYVVWGKPVDPRRMDQYRDAPFTPAQ LKATYPDCLTFPSAEAFHTHIWSAMGLSEAACRLLHKIQSADAPSRLDDIFKQGVLGVPE ALDLARTTVEDYERYDENFHAMDEKTRRMDTLRGIQQAYGEYAAARGKARAFEPVKPAVD GTVPAVLRDWALARMRGEVAVQLPADRAEQQNSEAEAKLLRRRTEDLRTRLDMIRGQMQG LDGGDLTRLELELDQARRTLEDVQANRTRIEQTFASIGETLPGDEQAWNERRINAVNFKR EYNKRDGECEEALTAAINARAGARGDLERLQRDFDRQRSQRTRISQQMDETRAMLCRATG LTPAELPYVAELMDVNEHEEDWRLAMNVAYAPIAQTILVDKRHEQGFAAKVSTIDPRTMP RRTWQFVDTARHYDDTGAHANILTGEQDGDWLSGKLRYRDDSPFADWLRSQTQDERFDAL CVTAIDDTDRTNRQVQADGQIKSGARGQHGTKDRAQVIGFVNETYLNALAAQVDAARNAL SQADTDYTAAKTQSDNLHRELELANQLAYTSWERIDIAGAQRTITDTQDAIASIKNDPKL AELAKQRDELNAELDRVERQRIESDQAAARAGSAVEAALIWLRDHADTGTTDAAGATADN DDDAASGPLPDEVTAALAESYDNRFAGLADAAMRAHMIIGAGAAGTQAPGESFPERTIAG IGKDMASRINLLNGQADAARTGVESKMSTYIALYAADDDSLTASVEDYRYYLDELASLTQ LAAVAATDAEYRRCLEQLLRSFLTIKRAIDTDASDIHDQLDRINAMLKGQQFGPKHGSLS LHADVRRPERTFWAQLIRVIGTLNDWKSADVNDSDASRKAFAACAPMVGLLRAELAQVKD ANGVKSYGARNLDPRCRSSFYAIVHHADGPDERITSTGGRSGGALQELTSFVYGAALIYL LGGGLTSEPSYTTLFLDEALIKADGRYTQRALTVLPRLGFQVIVSAPESKTGEILEVSTK AYVTYKDPDTGLTSLREAVLHQNDMDDESSSDILKDDGVAE >gi|316915236|gb|ADCN01000043.1| GENE 5 6502 - 7686 389 394 aa, chain + ## HITS:1 COG:Cgl2743 KEGG:ns NR:ns ## COG: Cgl2743 COG4924 # Protein_GI_number: 19553993 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 139 380 133 365 368 76 28.0 8e-14 MVGMKDIAAITTCVKKHMRSHMYDIEPAWPFPVPVGLPDQAFLETNAIAVHDNNNEIRQW ASKNGCEIITKHRTIGTSVELISKVVVPDESIAMRVVGRTLAAECREARRRIACLVAACD VAPETIESAARMTGHEQPDDFDLLVSAVRYFRHHDVTGMTPRQIPLTGFSGKWLNESKTN RRKAICRLLGVETLGLSKRPTELRFRYLDPVRDDAELERIIWCPWEGEALSGIKYAVIVE NKDTYQTMPPIAQGICIWGSGRAVSDAVPAVPALRDMRIVYWGDMDADGLEILSTLRESG IECDSILMDCDAYDRYHRFGTDRTERSAKIAMREPKPTPGLQSAERRLYERLCADKTIAY RRIEQERIPMRDAVDELRKLGIPVESIENQDLPI >gi|316915236|gb|ADCN01000043.1| GENE 6 7907 - 8419 -12 170 aa, chain + ## HITS:1 COG:no KEGG:BL0701 NR:ns ## KEGG: BL0701 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 170 19 188 188 335 100.0 4e-91 MYLMGACVCDDTETETRQRLALLKPKGARKLHWRDMRPSLRGKVVDAMAAMDIDHVIVAA VPMSQWNTAERARRKCLERLLPLLETEYNVDTLVLERREISQDRNDIRFIDGLRSRRFIG PIRVELCAGETDARLWLPDQLLGAYGDAQAGTGRYDEFLGHVRTVFIDSD >gi|316915236|gb|ADCN01000043.1| GENE 7 8699 - 11719 4110 1006 aa, chain + ## HITS:1 COG:MT1675 KEGG:ns NR:ns ## COG: MT1675 COG0178 # Protein_GI_number: 15841093 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Mycobacterium tuberculosis CDC1551 # 64 1002 12 957 980 1324 68.0 0 MQTGARRATSATGAKTGKGKNGEVIVEKVMTSDSFLSREIKKAPLIEHDGSLVADISHIP NDLKITIQGAREHNLKNVDLAIPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVESLSA YARQFLGQMDKPDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTGIPH CPECGEPVASQTPQQIVDTLLGYPERTRFQILAPVVKGRKGEFVDMIELLRSDGYARALI DGEMTQLSDDIKLTKQKKHTIEVVVDRLVVKDGIRQRLTDSVETALKLANGSIVIDFVDE EEGSPARRQPFSEHRSCPNGHTLELDEVEPRTFSFNAPYGACPACTGLGFKLEIDPDLII SDPDKSLADGVIEPWSGTKMTSQYYGHILEGLAKEMGFSMKTPWKGLPDDVKHDILYGHD FKVNVSYRNRWGRLREYSTGFEGVIRTLMRRHDETDSQSMREYYESYMREVPCQVCHGRR LKPEVLAVTVDGKSIFDVCDMPVVRELAWINGLKLEGSAQLIAGEVLKEIKARLGFLNDV GLDYLTLSRAAATLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNERLIETLHH LRDLGNTLIVVEHDEDTIRRADWVVDIGPGAGEHGGEVIYSGPAKHLIEAKRSITGDYIA HRREIAVPAKRRKIHKTQVLKVVGARENNLKNIDVSFPLGVLTVVTGVSGSGKSSLVNTI LYPVLADKLNGARIVPGRHTRVEGVDQVRKVIHVDQNPIGRTPRSNPATYTGVWDKIRTL FAKTPEAQVRGYGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVDCEVCHGKRYNRE TLEVTYNGKTVADILNMPIEEAADFFKAYTGISRYLKTLVDVGLGYIRLGQPAPTLSGGE SQRVKLATELQRRSDGKTVYILDEPTTGLHFEDVNKLLKVLQSLVDKGNTVIVIEHNLDV IKEADWLIDLGPEGGDGGGTIVTQGTPEQVAECEASWTGKFLKPML >gi|316915236|gb|ADCN01000043.1| GENE 8 11869 - 14235 2433 788 aa, chain + ## HITS:1 COG:Cgl1554 KEGG:ns NR:ns ## COG: Cgl1554 COG0322 # Protein_GI_number: 19552804 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Corynebacterium glutamicum # 51 786 7 693 696 562 43.0 1e-160 MTNDIERHSPDEWRKTAAALMSESIAVGAGETTAKVNANGAPLLGDSRDLFRPKTSDIPA KPGVYKWRDGEGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEWTVVATEL ESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGERIPRVWVTRSRKRRDTRYFGPYAK VWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLFASIGKCSAPCVNRIEADEHRRLC EQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNAVVFDQDV DADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIDDADLMADLLVQVYSDAAGD NHPQSAATISTNREAIGSTQTITATDAVARAQATRERNTRQETTGRADLLAPIAPVPREI IVPVEPARREELEGWLTNLRGGAVTIRVASRGDKKQLMDRANENASQALQRSKMSRISDM GARTQAMNDVAKALGLAEAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYRRFAIR GKDGKGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRVASAAGKMTTAVAAETIAAN GNDNGEGGSDISGKGHAVPVGVQNDARESPPDIVQQNTNRHHFAYKPNLVVVDGGKPQVM AAAKALEDCGVNDVAVCGLAKRLEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAIT YHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEA LYNALHEQ >gi|316915236|gb|ADCN01000043.1| GENE 9 14344 - 15315 810 323 aa, chain + ## HITS:1 COG:Cgl1591 KEGG:ns NR:ns ## COG: Cgl1591 COG0169 # Protein_GI_number: 19552841 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Corynebacterium glutamicum # 4 323 7 270 276 116 33.0 5e-26 MANHRCAVLGKPVAHSLSPVLHNAAYRSLKLDDWLYDKHEVGEDDLDAFLKGLDSTWAGL SLTMPLKKTIQPYGVPENLWAKELKVANTAVFDWSVAADDPAWPNGKPGIKLYNTDVIGI QLAFDHANRELGEHHTASRSGTALIIGNGNTATSALAACCMMPEIGHIVVAARHPGKNTG LKPVAEKFVNVHNPYNEIELGDDQALLEAARNATYVINTIPGHAADNVADALADAGTEPF SGLLLDVIYDPRPTKLMEAWRAHGGHAIGGEEMLLYQALVQVLLMTGIWDDDPPSDADQR LQDTTTEDDQLEIAMRKALEEAL >gi|316915236|gb|ADCN01000043.1| GENE 10 15315 - 16301 890 328 aa, chain + ## HITS:1 COG:Cgl1553 KEGG:ns NR:ns ## COG: Cgl1553 COG1660 # Protein_GI_number: 19552803 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Corynebacterium glutamicum # 24 321 10 305 309 268 50.0 8e-72 MNQQTTNRDTGEAAATNAPANSATSTSTPDNQPTPLDAFEVLLITGMSGAGRSHAADCVE DMGWYVVDNLPPKLLIPLVDMMTTSGSGSESGVHKLAAVIDVRSSYFDELAAVLGHLDDL GVKTRILFLDASNEVLIKRYESVRRPHPLQHGNRLIDGILEERHLLEDLKERADWVIDTS SLSIHQLSTKLYEAMLGSGPTTVAVHIFSFGFKYGMPIDADFVADVRFLPNPFWVPSLRE LTGHDKPVADYVLSSKGAKEFLDAYEKAIEIALEGYAQEDKHYVTIAVGCTGGQHRSVAM SEELARRLRAHGLNVTVSAREQHKRHSS >gi|316915236|gb|ADCN01000043.1| GENE 11 16500 - 17450 1081 316 aa, chain + ## HITS:1 COG:Cgl1551 KEGG:ns NR:ns ## COG: Cgl1551 COG1481 # Protein_GI_number: 19552801 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Corynebacterium glutamicum # 1 306 1 305 327 224 45.0 1e-58 MALLDDVKSELAAFEGDSPAAIKAQAAAMIRFGGGLRPVQNTYVIQAVFTSLDVAEWLKN TLRNTFGHEAEVNHLTRQTPNGPVETYVVLVTRNVVALALQTGLVDRRKQQVRGLPSEVV NGSIAQIKAAWRGAFMARGFLSDPGKASFLEIACPTEEAAMALCGVARRLGIQAKHRTLR SSERVTLKDPDAIERMLKLMGATRSAREWTGKRSDGEARGKANRLANFDDANMRRSAKAA AEASEKVQHAFEVLGDNIPDNLRQAGQLRIDHVDKSLEELGKIAEPQITKDAIAGRIRRL LQLAEKTEKARAAEGK >gi|316915236|gb|ADCN01000043.1| GENE 12 17562 - 18824 1878 420 aa, chain + ## HITS:1 COG:Cgl1549 KEGG:ns NR:ns ## COG: Cgl1549 COG0126 # Protein_GI_number: 19552799 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Corynebacterium glutamicum # 20 419 3 403 405 389 55.0 1e-108 MQSGKIGHFDVRFVKERIFMKTLKDLGDLKGKRVLVRADFNVPLDGTTITDDGRIKAALP TIKTLREEGAKVILMAHLGRPKGKVVPELSLAPVAARLGELLGTNVPLAKDTYGEDAQAK VAAMNDGDVVLLENVRFNPEETSKDADERAAYAKKIAALGEAFVSDGFGVVHRAQGSNYD VAADLSAAAGLLVEKEVKALSKATENPERPFTVVLGGSKVSDKLGVIENLLDKANRLVIG GGMVFTFLKAKGYEVGTSLLEEDQLEKVKGYIETAEKNGVELVLPTDVVVNAGFPAGDTP VAPEVVAADAIPADKMGLDIGPESQKLFHDKIVDSKTVVWNGPMGVFEVPEFAAGTKAVA QGLVDATAAGAFTIVGGGDSASAVRNLGFPEDGFSHISTGGGASLEFLEGKELPGLKVLE >gi|316915236|gb|ADCN01000043.1| GENE 13 18881 - 19684 820 267 aa, chain + ## HITS:1 COG:MT1482 KEGG:ns NR:ns ## COG: MT1482 COG0149 # Protein_GI_number: 15840896 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Mycobacterium tuberculosis CDC1551 # 5 259 3 255 261 249 49.0 4e-66 MASKRIPLVAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVL VEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVD QVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWA IGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDVDGF LIGGAALDVEELAKIARLALKSTKSRN >gi|316915236|gb|ADCN01000043.1| GENE 14 19748 - 19996 446 82 aa, chain + ## HITS:1 COG:no KEGG:BLD_0434 NR:ns ## KEGG: BLD_0434 # Name: secG # Def: preprotein translocase subunit SecG # Organism: B.longum_DJO10A # Pathway: Protein export [PATH:blj03060]; Bacterial secretion system [PATH:blj03070] # 1 82 1 82 82 116 100.0 2e-25 MTALKITLQVIVVLLSFVLTLLILMHKGKGGGLSDMFGGGLTQNAGTSGVAEKNLNRWTV IIALVWVALIIGLDMMTKFNLG >gi|316915236|gb|ADCN01000043.1| GENE 15 20098 - 21048 1562 316 aa, chain + ## HITS:1 COG:L0018 KEGG:ns NR:ns ## COG: L0018 COG0039 # Protein_GI_number: 15672358 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Lactococcus lactis # 8 315 7 313 314 251 41.0 2e-66 MVTMNRNKVVIVGTGQVGATAAFGIVTHGLCNELVLIDCSAAKALGEARDLDDGSEFQDR HVKVRAGDYADCKDADIVVITVGRKPPANSNRMAELGFTVGLVGEVVDNVMASGFDGVIV MVSNPVDVMAWYAWKRSGLPRTQVLGTGTALDTSRLKTIIGEETGLDPRNVGGFVMGEHG DSQFTAWSTVSLGGKPFARFLADNQDRFASVSTTEIEEKTRTRGNEIVAAKGGTNFGIAS TVAGIVQTILWDERRIVPVSTLLDGEYGEHDVFLGVPTELRANGANEIVELDLSEDERAK LHHSAELVREHCEGLL >gi|316915236|gb|ADCN01000043.1| GENE 16 21045 - 21896 1015 283 aa, chain + ## HITS:1 COG:Cgl0894 KEGG:ns NR:ns ## COG: Cgl0894 COG0561 # Protein_GI_number: 19552144 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 12 282 17 275 277 79 27.0 1e-14 MILDAITPKQPRLLVADLDGTLLHDAEVFEDRFITQRSIDTINRAHDAGMQFAIATARPV STGLQFAEKLPVDAVIYLNGALIDFDPAHSDFDLLTSGATPADENHLIKIGFSSRRACEV CLFLLDRMPGLKLGIVMNDVRYTNFDVRVYWKTQAFQYTNFHDVPEGVADKITIFPEPEQ WNELRALIPPDFDISISEGVMWMLMNPQANKEHALHLLCERLDVPLEQTAAFGDDLIDIN MMSESGRGVAVANANPKVLSIADEICPSNNEDGVAQWIEAQLG >gi|316915236|gb|ADCN01000043.1| GENE 17 22007 - 23563 2214 518 aa, chain + ## HITS:1 COG:L162604 KEGG:ns NR:ns ## COG: L162604 COG0436 # Protein_GI_number: 15672142 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Lactococcus lactis # 115 517 2 401 404 590 68.0 1e-168 MSVSVFAERLRNAMNSRGLKQVDLVHAAEHRGVKMGKSHISQYVAGKTMPREDVLEFLAS ELDVDMNWLRGEESTTQLNSDASNSVTDGEHAATPLATGASKPQTDSEIPVGRRRTFGKS HKLDNVLYDVRGPVADEAMRMEANGTHILKLNIGNPAPFGFRTPDEVVYDMAHQLTDTEG YSPSKGLFSARKAIMQYAQLKNIPNVTIDDIYTGNGVSELINLSMSALLDTGDEVLVPSP DYPLWTACVNLAGGTAVHYLCDEQSEWYPDIDDIRSKITSNTKAIVIINPNNPTGALYPK EVLQQIVDIAREHQLIIFSDEIYDRLVMDGLQHISIASMAPDLFCVTFSGLSKSHMIAGY RIGWMILSGNKRIAKDYIEGLNMLANMRMCSNVPAQSVVQTALGGHQSVNDYIVPGGRVH DQRDLVYDMLNQIPGITAVKPKAAFYIFPKIDVKRFNIHSDEQFALDLLHDKHILISHGG AFNWHRPDHFRVVYLPRMGMLRETMGEISDFFSYYWQS >gi|316915236|gb|ADCN01000043.1| GENE 18 23692 - 24801 717 369 aa, chain - ## HITS:1 COG:no KEGG:BLD_0439 NR:ns ## KEGG: BLD_0439 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 369 1 369 369 624 99.0 1e-177 MDTSDRQVAETGRNRELGLIPAMVMAVVATLSGAGVSFAPLYERIWGGMMLHPNCPAIGR MTYYLSGQATDDYGACVTSPLWFMTVTALSVVAILCLTVAGVQGFSRHRLCSVFSVLIAA VAVAIILVLSANTKIVTLWAMYAVTWLVHAIVTSYLSNGWIRIARLLFVWQIGVMPVFVT EYSVSDEVNFSGGATIACGLGLAAYALVQYASLTIDSQNNSNRITPERSGIRATSLHDLF HTISINASAIRNCSVPVALFWSGITFFTYSYNTGRHTDFCPALSATDNAGLVAYCIGHEA LGLLTVVLCVLPLFSLLSAITAITLAARNANNGGNAANADGSRNSAAVCYLLLATALSAT AFVIAFTLA >gi|316915236|gb|ADCN01000043.1| GENE 19 24973 - 26310 1564 445 aa, chain - ## HITS:1 COG:CAC1610 KEGG:ns NR:ns ## COG: CAC1610 COG1114 # Protein_GI_number: 15894888 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Clostridium acetobutylicum # 1 438 1 428 440 278 41.0 1e-74 MNKLVARQRLVMTFTFFSMFFGAGNLIFPPFVGAQAGSATIPAAIGFIVSAVGLPILGVL AVTFAGGFDKLASRVSPKFALFLGVAIMLTIGPCFAIPRTATTSFEMMVAPFVPSSYGWL AQLIYSLVFFTLAFLFAQHPEKLSKVLGRFMGPLLLVLIAVLFIACLIHGIGIPANPMGD YSTNQIARGFLDGYQTMDLLAALYFGIVISANIRAQQVDDESQVQKETAYAGLGTGVLLI VIYGALSYVGVVSGAIVTIDPAKDTGATVLTNLTSSLFGTFGTAFLGVVFVIACLNVCTG LIGTCATYFHTRFRTVAGRTLSYRTWQVIFTVFSFIVSNAGLSAIIKVSVPVLSALYPIA IVLVLLTLTHKSLGARFPRVYFWTVLLVGIASFATCISSLVAVFGGSIGWLDAALAMLPL QQYQLGWVVPAILGVAIGIADAPRR >gi|316915236|gb|ADCN01000043.1| GENE 20 26440 - 27543 1914 367 aa, chain - ## HITS:1 COG:Rv1448c KEGG:ns NR:ns ## COG: Rv1448c COG0176 # Protein_GI_number: 15608586 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Mycobacterium tuberculosis H37Rv # 9 363 12 369 373 364 56.0 1e-100 MTEATQRTSDNGVSIWLDDLSRSRIESGSLQDLIANKNVVGVTTNPSIFQKALSQVGPYD AQLKELGKVDVETAVRELTTTDVRNATDIFREIAEATDFVDGRVSIEVDPRLAHETEATE KQAEELWAKVNRPNAMIKIPATLEGLPAITATLAKGISVNVTLIFSLERYEQVIDAYIEG IAQAAANGHDLKHIGSVASFFVSRVDSAVDKLLEANGSDEAKALEGKAAVANARLAYELF EKKFAEDPRWADLAAKGAKVQRPLWASTGTKNAAYSDCKYVDELVAKHIVNTMPEKTLNA LADHGNGAPSIEGTYEESHAIINKLAELGINLKDVTDKLEADGVAAFIKSWDSVLADVQS GIDRVNA >gi|316915236|gb|ADCN01000043.1| GENE 21 27662 - 29770 3396 702 aa, chain - ## HITS:1 COG:Cgl1536 KEGG:ns NR:ns ## COG: Cgl1536 COG0021 # Protein_GI_number: 19552786 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Corynebacterium glutamicum # 7 695 23 698 700 684 53.0 0 MTEFKETELDERAIKMAKVLSADAVEKAGSGHPGSPISLAPVAYTLYQHFIKHDPNDPNW EGRDRFILSGGHASLTQYVQLYFSGYGVTLDDLKNFRGGAATRTPGHPEYGLTPGIEMTT GPLGQGFASAIGFAYGERFQRGLLDPETPKEDSPFYHKIWAICGEGDIEEGISGEAASLA ANQKLGNLTVIFDANRIQIEGDTNLVLAEDVLKRFQAYGWYTDEFSFIQPDGSYKEDIEG LADVIAKAEKAAPDQPKLIKVHSLIAWPTPGKTNDPSSHGSKLGTEAVAGLKEALGYDPE ENFHVDEEALAHARKVAERGLEAHKAWDEKFDAWRKANPDKAALYDRLKAGELPEGFDKA LDDLEATFEVGKGVATRGASGSVLNAIAAVMPELWGGSADLGGSNKTDLKGAATFAPAEC ATKQWPNCNEFGRQLHFGVREFTMGCITNGILLGSHTRPFGGTFFMFSDYERSAVRLAAL MQIPNLYIWSHDSVAVGEDGPTHQPVEHLASFRAIPQLEVIRPADAFETAEAYRYFFEKK NTLPGAMVLTRQGVPVLAETAAKAKDGVKKGAYVLVDTEGTPDVILMASGSEVQWAVAAA KTLAGEGVKARVVSVPSMEWFEEQDAEYKEAVLPAAVKARVSVEAGVAMPWYKYLGSYGK PVSIEQFGLQGDGAQNMIDLGITAEHVVEAAKASIAEVEAAK >gi|316915236|gb|ADCN01000043.1| GENE 22 30145 - 31263 1140 372 aa, chain + ## HITS:1 COG:Cgl2239 KEGG:ns NR:ns ## COG: Cgl2239 COG1420 # Protein_GI_number: 19553489 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Corynebacterium glutamicum # 9 366 1 329 331 225 40.0 1e-58 MTQSRRMLVLRAVVEDYIRSQEPVGSTSLTRDHDLGVSSATIRNDMAALEDEGYLIQPHT SAGRVPTEKGYRYFVDRLATVVPLSEAQRRGINSFLSGSVSLKDALQRSARLLSEITGQV AVVASPSLAKATLRHVEMVPVAMTTLLAVVITDTGRVAQHGLTIASMPAVDEINRLSNTV NEQCDGLSLSKSAETVRSIAASAGYESVRGVADALADAFESMALDERANELYMSGTSHLA HSRSLADLAPLFDALEEQVVLMKLMSNLSEETNASGVGVAIGSEMHTPGLLHASVVSSGY GRSGAAGEPAGNDPVGEPETESETESQTNDTEPIAFVGSIGPTHMDYAATMAAVRAVARY LTAFLSEGRTQD >gi|316915236|gb|ADCN01000043.1| GENE 23 31319 - 32464 1322 381 aa, chain + ## HITS:1 COG:ML0625 KEGG:ns NR:ns ## COG: ML0625 COG0484 # Protein_GI_number: 15827255 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Mycobacterium leprae # 3 381 4 376 378 294 43.0 2e-79 MADYYETLGVERGASDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRR MYDSGVDPNNPNAGAGGFSGAGFGDMSDVFSTFFGSAFGGGSQGPVPRTQPGRDALASAS IDLKTAVFGGTAHVKINTFSLCQECGGSGAQGGAQPVTCPDCHGQGFMQKVVRTMLGQMM TSAPCERCEGHGTIIQNPCPSCMGHGRVRTTRTVGVTVPAGINDNARLRLANQGEVGEGG GAAGDLYIDIRIKADKQFTRDGDDLHCWIQVPMSWAVLGHDLSIDTFDGEKTVSIPAGCQ TEDTVTLKGLGVTNIRNKDERGNLIAHVNVLIPTKLNETERGLIEQFAASHDSGATHVSQ ASRPQAGQKKGFFSKLKDALS >gi|316915236|gb|ADCN01000043.1| GENE 24 32809 - 33489 375 226 aa, chain - ## HITS:1 COG:no KEGG:BDP_0599 NR:ns ## KEGG: BDP_0599 # Name: not_defined # Def: hypothetical protein # Organism: B.dentium # Pathway: not_defined # 1 153 1 152 259 239 75.0 5e-62 MASLTTLINRMTYWCVTANMGYSQYDRWNFNSAGGNCDCSSLVIHCLREAGFDTGSATYT GNLSGQLTARGWQRLPVDGNPHAGDILLNDANHVAVYLGGGMLAQASISEYGTIAGNAGD QTGGETNISPYYNYPWDCYLRFAGTQSTPTREEDTPMASCMIRNDDTGLIYYWSPESGNV PLTHPDQARLLGMAGVKLVHGSGKAPWWARAQQVSDLVRPHIKERV >gi|316915236|gb|ADCN01000043.1| GENE 25 33492 - 33914 531 140 aa, chain - ## HITS:1 COG:no KEGG:Exig_1375 NR:ns ## KEGG: Exig_1375 # Name: not_defined # Def: holin SPP1 family protein # Organism: E.sibiricum # Pathway: not_defined # 24 90 3 69 88 62 41.0 4e-09 MANTVGVADHKAANTTTIPGLTVERTKSIVLLLVQLFSVVQTGLSIAGISQLPFTSDQVS TAITGVIAVIASIYSWWRNNNVTEAAVQGQQLTTAIKNGTIAATQGTSLPPETTGLTHDD IDAFEQALKAHADASLPDAE >gi|316915236|gb|ADCN01000043.1| GENE 26 33927 - 34283 448 118 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLPEGLPAWAYIVVSALVLAAQIVTAIWINHRGDERDRATRGEITNNHEMPLRDDLDDK ALRTLDAIESLRGAVDGLRDDMNGEFATVNRRITTTEQNLIELRHEVNDLRRGGNNHQ >gi|316915236|gb|ADCN01000043.1| GENE 27 34583 - 35227 260 214 aa, chain + ## HITS:1 COG:no KEGG:Sthe_2831 NR:ns ## KEGG: Sthe_2831 # Name: not_defined # Def: integrase family protein # Organism: S.thermophilus # Pathway: not_defined # 2 204 146 365 376 96 33.0 5e-19 MLRSAVRLGLLDADVTGRVTPPKPSGYEPEVLDIRQIRQLLQGFHGHELEAWLICSVCLG LRTEEALGLEWQDLNLNTGKVRVQRGLQWVDGHEVIVDPKTELSRRTIVLPRFAVLRLRE IRPRDGGRLIGSLNPGQVARRYATWCRSQNLPYVPRRNLRHSWASTALGAGVDVAVVSRA LGHSSIATTARYYLRPDSEVLREAQRTWEHALIR >gi|316915236|gb|ADCN01000043.1| GENE 28 35100 - 35567 211 155 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWRWSVEHSATPASLQQPATTCAQTVKYSAKRNAHGSTPSYVDRDSLTPTVLWEGASGKT GTLPLAESITDFRELIIEGNDDDHYPRLFHTAAEAGSIVLSFVGMNFVNGLASGKATLVR IADTSVQIIGHRIHVMEGNTSDTQCLTITRILGAR >gi|316915236|gb|ADCN01000043.1| GENE 29 35564 - 35713 70 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVFTPVTTGVDTALVACYDVPHKVVRAIQVGTQQNITMDVRFAVIPAV >gi|316915236|gb|ADCN01000043.1| GENE 30 35772 - 36326 379 184 aa, chain - ## HITS:1 COG:no KEGG:Ccur_02620 NR:ns ## KEGG: Ccur_02620 # Name: not_defined # Def: hypothetical protein # Organism: C.curtum # Pathway: not_defined # 3 164 1 163 272 134 43.0 1e-30 MTVELITGFAGTPHIGSDDVGAFNAGLVGPGDYALTTGNQLKATMSNANTIAVQSGDAVL NGRHVHLTGTTTATVQSGTQGQKRNDIAVLRYSKNTTSGVETCQLVVIKGTPTTGTPADP AHNTGSILDGVATHDMPLYRVSLNGITVGTLVPLFNVLKPMKDMWDSLTPIRSGKKRDVH RQRR >gi|316915236|gb|ADCN01000043.1| GENE 31 36337 - 36543 205 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAYVKKTNLRGPQGPAGPQASTEQIFDKAWPIGTVLETNSDSTPPTYNTGWKKLPNIMGR GFLWQRIG >gi|316915236|gb|ADCN01000043.1| GENE 32 36556 - 37206 953 216 aa, chain - ## HITS:1 COG:no KEGG:BALH_3339 NR:ns ## KEGG: BALH_3339 # Name: not_defined # Def: triple helix repeat-containing collagen # Organism: B.thuringiensis_AlHakam # Pathway: not_defined # 12 202 647 838 1269 119 46.0 1e-25 MAYVKKLNLTGPQGPQGPKGATGPQGPQGPQGPQGAKGDAFAIAKTYKSVAEMNAGYATD GVLNGQFVMIDTGNVNDADNAKLYVKGAKGYTYITDLSGATGMTGPQGPQGPKGETGAQG EKGATGAKGDTGPQGPQGVKGATGAAGAKGETGPAGPAGPTGATGPAGPQGEKGATGAKG ADGNTITYGTSAPAAGATGKAGDMYIQSNGDLYIFE >gi|316915236|gb|ADCN01000043.1| GENE 33 37271 - 38110 1149 279 aa, chain - ## HITS:1 COG:no KEGG:Cbei_3387 NR:ns ## KEGG: Cbei_3387 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 123 274 50 193 260 111 47.0 3e-23 MSIQLIDKIKQKNDGNFYLVDAVDVEYNKKSLIDALKAGDIIPAGGGTSAGTFHVANINI GSNTAFDSSKLTPSTVSAGDLIVDANGAFYTVAKVDGTTVTPSAALTADGGGTLGFKGAK GDKGEPGAQGPAGPQGPKGDAFTIAKTYASVAEMNADYRNADIPIGSFVVISTTNVNDAD NAKMFVKNDTQYAFVTDLSGAQGIQGPAGPQGIQGPKGEPGEQGEKGANGTPGAKGETGQ RGNRITVGDGDPGEPPADALAGDVYINQANGDFYQVQDQ >gi|316915236|gb|ADCN01000043.1| GENE 34 38127 - 38849 911 240 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299146038|ref|ZP_07039106.1| ## NR: gi|299146038|ref|ZP_07039106.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] # 46 237 305 486 491 100 36.0 6e-20 MANAWKKMGSLRGPAGAGADVATSKKAGVVKPSGDFDITADGTLSLYTPMSVMSFTGGSD HEIGETVDTVNLAWKLNKTPATLTLDGQEIVKGEDGQFPTSQPLTKQALKANKTYTLAVT DARGSKASKTTSVLFHYKRYWGVGGNPADSVDSTFLLALAGSELGDSKAKTFTVNAAAGQ YIWYAIPHSFGTPTFKVGGFEGGFNLVKTFDHTNASGATVSYDVWQSTNAGLGNTTVNAA >gi|316915236|gb|ADCN01000043.1| GENE 35 38842 - 39156 554 104 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRTLNSCNCDDLVTIIDDAIVMEGQKGESAYETAVRLGYQGTEAEWVDSLHGKGITLGH GDPTSQLTAREGDGYLNADNGDLWEYTSEPDGSEETNDKENNHG >gi|316915236|gb|ADCN01000043.1| GENE 36 39153 - 39551 400 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTRNTLVRSCLLEANLILVAGVTNTYRLRWLRRVTDRQGATVARPMDLTGWTPIMQIRRD RLIVFDLTPYVRLDEHGCITITVPADTTRDLPEGSAAWDLLLAAPNGDTTRLAAGSALIE STVSITTGRSQS >gi|316915236|gb|ADCN01000043.1| GENE 37 39551 - 41122 1482 523 aa, chain - ## HITS:1 COG:no KEGG:Apar_0590 NR:ns ## KEGG: Apar_0590 # Name: not_defined # Def: hypothetical protein # Organism: A.parvulum # Pathway: not_defined # 1 521 1 519 521 229 31.0 2e-58 MVSLIVTDAKHKPLRAVDDYMLDLAYGSDENSFKLTCLPQPEAGALIIIDGTEYGGLVTV RNTDGSVEGPTWHGLLSRRILQPDRGQDYLTVSGAAGDVLNMLFKRIGLDALFTASARHA VTINPYSFDRYTDAYTGIRKMLAANNAKLRLIWADGRVNAYALPAEHYGDSIDSDLVEFK ASLDSQPVNHLIGLGTGELKDRAVVHWYADVNGNVSQTQSLTGLAERQAVYDYSNARPDE LNTETRKKLIELQSQGGVEVTITDNTLSMDVGDTVTGRDNRLGITLTVPVAKKIVKSSGG ILSVDYECGTASGDTTSLSGSAESNGSTGSGGSGAYYADGVTITMRNNTFSAVVTPSRVD DVEKTAKDAYTLASNYSAEIGKAQQDAADAIAAAAMNVASITTATPLSASRNGQTVHITA TEATAEGSGLMSAADKRKLDGLENYALPAATIATLGGVRPDGSTITVNEDGVITAHATST GNGILFPVGYVVMNTTGNNPADDFGGTWERRPSLGAHMWERIK >gi|316915236|gb|ADCN01000043.1| GENE 38 41107 - 41952 573 281 aa, chain - ## HITS:1 COG:no KEGG:Apar_0589 NR:ns ## KEGG: Apar_0589 # Name: not_defined # Def: hypothetical protein # Organism: A.parvulum # Pathway: not_defined # 1 280 1 276 276 124 29.0 4e-27 MQRLEYVCSTGGSISFEGPIYGETMPSLRGRAWTYTLGARTLTGVAWQARELTLTVKAVD GETQLDRLRMLTDHDVLAHSRDSTISGLLRVDDVWECRALITKSEPQSITPRIIETQLTV TQLGMWRRSLPTVTYAPSDPDAYQYLDHPYDMDYDYGPPSAPPVIAVDGLDPMPFRMTIY GPCSNPTVTIGGNQYRITGDIPGGARVEVDAVEGERSVAFVNAAGDRINWFANAERGAGL DSGSYIFQPLPAGRAEVSWPGGYTFELTPVEERSEPPWSAS >gi|316915236|gb|ADCN01000043.1| GENE 39 41939 - 44665 2871 908 aa, chain - ## HITS:1 COG:BH3518 KEGG:ns NR:ns ## COG: BH3518 COG5412 # Protein_GI_number: 15616080 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Bacillus halodurans # 40 724 39 662 940 129 26.0 4e-29 MAQDIGTVYVQVAPSGKDFGKTLEGDITGSVDTAARKSGGSLTGTLGKAFGKIGKLGLGA IGTITGGVTALAAKGGFTRALNIENAQAKLKGLGHDANSVSEIMNNALASVKGTAFGLGD AATVAASLSAAGIASGEQMTKVLKTVADTAQISGRSLTDIGTIFGSVAARGKLQGDDMLQ LMSSGVPVLQMLAKHLNTTSEDVSDMVSKGKIDFQTFADAMQEGLGGAALAAGDTFSGAL ANVKAALSRLGEGPGKLALESLRKTFNAAIPAVDALSSQLTPFVEQLNGKLTPYVDRAVK LIEQFSQGLQDGSITVQDIVGSLGQLAGAFALFAGVGGNVDKITNVFDTLGKLGDGGIGQ LTGKLKQMPGQLQSSLTGLQQFKSYFNKDIRDALAVDGDPFASAVNRIRQGADKLTGPFR LLGAKIAGSDVGQSVAGVADRLGVGFGKLTSAFDSNIKVLGSKVGNGFGGIFSKISDSKL VSGLSSVAGKAKSAMSPVVSGLGDVFGGIGDIVGPKLQAGLGKIGSLFGSFFSPGNFMKY MGIAGIIAALVAGLGMLDQSMQGQLFAMIGQLSAQLPTLLQQLNMQITASLPAMLAQGAA ILTALMNAISTNAPQLMTTAVLIVTTLVNGLASQLPTLLPAALNMIMALVSGLASNVGQL LNSGMQLLLGLVQGLMNALPQLIAQAPTIIGNLASSIAANLPQILQTGVQILVTLANGLA SAIPQLIGKIPAIVKSIWDAFTSVNWGSVGMNIIKGIASGVASAAGTLVNAAVNAAKDAL NWVKDKLGIHSPSRVFRDEVGVMIGRGMAEGIDRSQEVVNRSLGELADGLTLDGYTFGMP TPVMSLPANACQMVNGTQSNQQGMQSQLDELLAEVKAFHEDMPFILQQLGINIDGREFGR AVRRYAKA >gi|316915236|gb|ADCN01000043.1| GENE 40 44716 - 45195 211 159 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAHRHRAHLGRTIRPRPKSVYLSALHANHREALDADWLATYHTTWKPVTLAEWLNAPADR KPKANYGIGQAWRLTRQILRNHTSHCFAALAGWTYTPTGAEIAMWDMFELEGRLQREGWR PWTDRHADPFAPTRLETSQARKERLERRELLKQRFHITD >gi|316915236|gb|ADCN01000043.1| GENE 41 45096 - 45470 561 124 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNQYAKVEPIINDDDQLEDVHLDVLGVKLDLPNLNSADLPIDLVNVILLIKSQPVLSDE QTALAMSAFLAYFQQLRPDYWNALRKTGHAMAWLTATVRTWAEQSGLDPKAFTSVPSTPI TGKR >gi|316915236|gb|ADCN01000043.1| GENE 42 45616 - 46236 869 206 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADNSYISSGNNAELVRAVKDYAVFLFGEGETYTKPAGADWTPSANKLPIGYNSEDGTTI HPEPGDETEIKGHNGDVVYSETDPGYWTFRFSALEGKKSVVELYTNSTVDKDGGIHVKDA STSKTMSMVIAGIDQKERPIVIYAEKIKVSDRDDITLKSTDLLQYNMTLKTFKGSDGYQW HAWGMVVEPSASTAAHNATAEAAAEA >gi|316915236|gb|ADCN01000043.1| GENE 43 46280 - 46678 316 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVFQPPTRTPRLERILLNLLRERFPDVVFGTLRSRNNSESECVIVAEPQQKATPISQYV RVRCSIWVRRDDGTGDLDASHELASSIELYLTGLWPPIPIISIEHDSGPVRMTDENGCIY SYLILLLQTNTV >gi|316915236|gb|ADCN01000043.1| GENE 44 46675 - 46920 380 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKKVKVVLNRNAFSSEVLHEAVKPVMDSVQEQMEGMAEVHPSIKVYRNEDTDRSNVVAT CPAAVEGAHGVLTQMIGKVVA >gi|316915236|gb|ADCN01000043.1| GENE 45 46924 - 47241 273 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MERVDVYRGAAEMDADGNPVQGEMRHVATLMGFVEPVEASQSPGADSQGVARRFTLYFRG EPTGILDTDCLVVRGKPLMVDGPPLEWWRHGLHIGDVVNAFVREG >gi|316915236|gb|ADCN01000043.1| GENE 46 47241 - 47657 560 138 aa, chain - ## HITS:1 COG:no KEGG:Blon_1817 NR:ns ## KEGG: Blon_1817 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 8 137 15 133 135 78 38.0 7e-14 MADEQPNPFATYEDLEKRWHTLTPDEQAQADELLLDASESIRNHVSVYPETHEESWWTAH RRGLEIVCCQMVRTAMEQQVSGVPTGATQNTETTGPFSNSYSWASPDGYLRWNNDYLTVL GLGGQRAFSIDMASGEVV >gi|316915236|gb|ADCN01000043.1| GENE 47 47670 - 47966 398 98 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAFTQDFIIQPAGRKKHKTGAMDVPARLWNPDGTPFTAFGGVKKGTAVADVAAADATVS AGAAPTKAEFDTVVAELNETKRQLNTLIGSLRTAGVIG >gi|316915236|gb|ADCN01000043.1| GENE 48 47966 - 48862 1501 298 aa, chain - ## HITS:1 COG:no KEGG:BLD_1155 NR:ns ## KEGG: BLD_1155 # Name: not_defined # Def: phage major head protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 297 1 297 301 361 62.0 2e-98 MAMDTSKLHLPKTVATAVVNKVKETSTIAALSPSSPQIFTDKEYMIFNGAAEADVTAEGQ TKSSYEQDLNYVSGKTFKVQTTTRVTSELKWADEDNRFQIIQSIQADQAEAIGRALDYVV YHAINPKTGEPLTGFDALTARAMQVTAGDDDITNVDNLADQLNETYDINGIAISRTWASR LRKIRVPATGMRYYPEIPLNLQVGTLDGIKAATSATVNGAKAKTPTHVLAIMGDFSLIKW GMVRDITSEIIPYGDPDQTGVDLKAHNQIAYRTEAMFSYAVIEPKAFAVLKTSTEEGA >gi|316915236|gb|ADCN01000043.1| GENE 49 48894 - 49424 862 176 aa, chain - ## HITS:1 COG:no KEGG:BLD_1156 NR:ns ## KEGG: BLD_1156 # Name: not_defined # Def: phage helicase # Organism: B.longum_DJO10A # Pathway: not_defined # 29 165 30 166 177 107 50.0 1e-22 MHDMPHWHRFRNNLRLIDSGAGEGGSGDPATGDPADTGEDIDWKAKFEEQRAHSRKWEQR AKDNSKAAEELQQFKDSQLSEAEKAAKRIKELEAANAAYEAEKQRNEWKAQVSKETGVPA SLLHGDTLEAMTANAKAIDQYAHPKPKGMPNQGKTPDGKAAGADERAWADDLFSNL >gi|316915236|gb|ADCN01000043.1| GENE 50 49636 - 49984 300 116 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 116 1 116 358 202 93.0 2e-51 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWS Prediction of potential genes in microbial genomes Time: Fri May 13 13:27:42 2011 Seq name: gi|316915202|gb|ADCN01000044.1| Bifidobacterium sp. 12_1_47BFAA cont1.44, whole genome shotgun sequence Length of sequence - 40497 bp Number of predicted genes - 37, with homology - 35 Number of transcription units - 21, operones - 11 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 367 304 ## Blon_0449 integrase, catalytic region - Prom 402 - 461 2.1 2 2 Tu 1 . + CDS 515 - 1507 1464 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 3 3 Tu 1 . - CDS 1494 - 1673 96 ## gi|239622308|ref|ZP_04665339.1| predicted protein 4 4 Op 1 29/0.000 + CDS 1609 - 2109 898 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 5 4 Op 2 . + CDS 2093 - 3271 1564 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 6 4 Op 3 . + CDS 3280 - 3708 433 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 3709 - 3754 14.6 - Term 3697 - 3742 14.6 7 5 Op 1 . - CDS 3743 - 3958 199 ## BL1127 hypothetical protein 8 5 Op 2 . - CDS 3933 - 4109 76 ## BAD_0770 ABC transporter + Prom 4087 - 4146 3.8 9 6 Tu 1 . + CDS 4219 - 5142 1682 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 5261 - 5301 11.1 + Prom 5277 - 5336 4.0 10 7 Tu 1 . + CDS 5403 - 7478 2854 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 11 8 Tu 1 . + CDS 7599 - 9236 1474 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 9290 - 9344 0.5 - Term 9523 - 9582 12.1 12 9 Op 1 2/0.000 - CDS 9610 - 10878 1988 ## COG0151 Phosphoribosylamine-glycine ligase 13 9 Op 2 13/0.000 - CDS 10905 - 11942 861 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 14 9 Op 3 . - CDS 12062 - 13573 2022 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase - Term 13897 - 13936 10.1 15 10 Op 1 34/0.000 - CDS 13977 - 14762 564 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 16 10 Op 2 31/0.000 - CDS 14759 - 15508 938 ## COG0765 ABC-type amino acid transport system, permease component 17 10 Op 3 . - CDS 15756 - 16619 1565 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 18 11 Op 1 . - CDS 16821 - 17291 507 ## COG3542 Uncharacterized conserved protein 19 11 Op 2 2/0.000 - CDS 17361 - 18734 1225 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 20 11 Op 3 . - CDS 18774 - 20276 1061 ## COG0499 S-adenosylhomocysteine hydrolase - Prom 20465 - 20524 2.1 21 12 Op 1 . + CDS 20441 - 22030 1238 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 22 12 Op 2 . + CDS 22027 - 22245 312 ## Blon_1950 hypothetical protein - Term 22178 - 22238 6.4 23 13 Op 1 3/0.000 - CDS 22279 - 23256 1611 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 23303 - 23362 1.6 24 13 Op 2 . - CDS 23364 - 24329 635 ## COG0583 Transcriptional regulator - Prom 24417 - 24476 3.4 + Prom 23968 - 24027 1.9 25 14 Op 1 . + CDS 24223 - 24474 178 ## 26 14 Op 2 . + CDS 24548 - 26062 888 ## COG1757 Na+/H+ antiporter 27 15 Op 1 . - CDS 26076 - 26735 580 ## BLD_0864 putative Zn-finger containing protein 28 15 Op 2 . - CDS 26732 - 28102 1546 ## BLD_0863 hypothetical protein 29 15 Op 3 . - CDS 28075 - 29379 896 ## COG0657 Esterase/lipase - Term 29444 - 29481 7.1 30 16 Op 1 2/0.000 - CDS 29516 - 33250 5895 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain - Term 33267 - 33305 8.1 31 16 Op 2 . - CDS 33313 - 34065 1270 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 34104 - 34163 2.7 32 17 Tu 1 . - CDS 34458 - 35768 1343 ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) + Prom 35838 - 35897 1.6 33 18 Tu 1 . + CDS 35969 - 37129 1215 ## COG0438 Glycosyltransferase + Term 37328 - 37373 1.2 34 19 Op 1 . - CDS 37066 - 37191 59 ## - Term 37200 - 37231 4.1 35 19 Op 2 . - CDS 37276 - 38301 1687 ## COG2008 Threonine aldolase - Prom 38339 - 38398 2.6 - TRNA 38451 - 38526 82.1 # His GTG 0 0 36 20 Tu 1 . + CDS 38863 - 39924 1846 ## COG0385 Predicted Na+-dependent transporter + Term 39945 - 39997 2.1 + Prom 40022 - 40081 2.6 37 21 Tu 1 . + CDS 40116 - 40497 296 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915202|gb|ADCN01000044.1| GENE 1 1 - 367 304 122 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 122 1 122 358 209 91.0 2e-53 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SG >gi|316915202|gb|ADCN01000044.1| GENE 2 515 - 1507 1464 330 aa, chain + ## HITS:1 COG:BS_yogA KEGG:ns NR:ns ## COG: BS_yogA COG0604 # Protein_GI_number: 16078904 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Bacillus subtilis # 1 328 1 326 329 176 36.0 7e-44 MKAVYASTVNHADPLAALAVGEQPEPQARPFWSTVSVRAVTVNHHDVWSLQGVGLAAEQT PMILGTDAVGILDEDIPGKHGLKAGSEVVLYTFVGTDGAGVAPGERRTILSEKYPGTMAE KTSVPSANVFAKPASLTTAEAAALGTSWLTAYSLLFDAAGIKPGDSVLIQGAGGGVSTAA IQLAHAAGLEVFVTSRDADKRSKALKLGANAALEIGARLPRKVDAVIESVGAATWSHSMK SVRPGGTIAICGATTGDQPGAELTRLFFQDIRVQGCTMGSREDFARLLRFVEHANLHPAI DSVVSGLDAAPEAFAKMIAGDMFGKIVIEL >gi|316915202|gb|ADCN01000044.1| GENE 3 1494 - 1673 96 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|239622308|ref|ZP_04665339.1| ## NR: gi|239622308|ref|ZP_04665339.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 59 1 59 59 102 100.0 9e-21 MVSQSLEDPMTTATSGLDSFAIIIYSLVIENKAHCTPDSGVKPRSESFSIHNSVRLTAQ >gi|316915202|gb|ADCN01000044.1| GENE 4 1609 - 2109 898 166 aa, chain + ## HITS:1 COG:BS_purE KEGG:ns NR:ns ## COG: BS_purE COG0041 # Protein_GI_number: 16077710 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Bacillus subtilis # 6 166 2 162 162 213 67.0 1e-55 MANESKPEVAVVMGSSSDWETMKRACDILDQFGVAYHKQVISAHRTPELMAEFAHNARAN GLKVIIAGAGGAAHLPGMIAAQTTLPVIGVPVRSHALSGWDSLLSIVQMPGGIPVATTAV GNSGATNAGLLAVQMLSAFEPELADKLEDYRNELKEKVAESNAQLV >gi|316915202|gb|ADCN01000044.1| GENE 5 2093 - 3271 1564 392 aa, chain + ## HITS:1 COG:L151330 KEGG:ns NR:ns ## COG: L151330 COG0026 # Protein_GI_number: 15673493 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Lactococcus lactis # 32 386 1 349 349 371 49.0 1e-102 MPSLSEETGGRVSMLMPGSTIGIIGGGQLGRMMALSARYMGFRVGVLDPTPNCPTGQVAD FQITAEYDDKTAIHDLAVQSDVLTYEFENVDAGAIDEVRGITATPQGTDLLRVTQHRVRE KQFINDHGTATAPWRAVNNFDELDAALGDIHYPAVLKTVSGGYDGHGQLVLRSDADLEKI RSRSDRGGGFPPSILEGFVDFAFEASILVSGNGKDFVTFPIVRNEHRNNILHMTIAPAEV SEHVAREAHELAIRLAKGFELAGTLAIELFITKDDQVIVNELAPRPHNSGHYTIEACSMD QFDAHIRGIAGWPLPKPKLLSPAVMVNVLGQHVEPTRALIATHPEWNVHDYGKAEVRHDR KMGHITVLTGDPAKTVADLEATGCWDDLKKKA >gi|316915202|gb|ADCN01000044.1| GENE 6 3280 - 3708 433 142 aa, chain + ## HITS:1 COG:Cgl2228 KEGG:ns NR:ns ## COG: Cgl2228 COG0735 # Protein_GI_number: 19553478 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Corynebacterium glutamicum # 7 130 17 142 144 119 46.0 1e-27 MVEHIERQTKQKDAIRAALADCEEFISAQDLHRRLEDEGSKIGLATVYRQLNALADAGAA DTIRLDGQQLFRLCGDDGHHHHLVCRRCGKTVEIDPPSEAWLRKVADGHGFTVESHTLEV FGLCSDCQKEQKAQKAQKAVSE >gi|316915202|gb|ADCN01000044.1| GENE 7 3743 - 3958 199 71 aa, chain - ## HITS:1 COG:no KEGG:BL1127 NR:ns ## KEGG: BL1127 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 71 12 82 82 118 100.0 6e-26 MFMTSGGYKHVFGEQHQSNAYMVRLKNHETSNVESRSAKLMKLDGVKGIVQNTTSKKQHA RRAEVSGIAAE >gi|316915202|gb|ADCN01000044.1| GENE 8 3933 - 4109 76 58 aa, chain - ## HITS:1 COG:no KEGG:BAD_0770 NR:ns ## KEGG: BAD_0770 # Name: not_defined # Def: ABC transporter # Organism: B.adolescentis # Pathway: not_defined # 7 47 552 592 996 67 68.0 2e-10 MHLHRRVMLAFHPAITLAAFLLAWASTVVPAWVAAKRKLRDKPASLLRAFHVHDFGWL >gi|316915202|gb|ADCN01000044.1| GENE 9 4219 - 5142 1682 307 aa, chain + ## HITS:1 COG:Cgl2577 KEGG:ns NR:ns ## COG: Cgl2577 COG0803 # Protein_GI_number: 19553827 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Corynebacterium glutamicum # 20 305 13 313 317 111 27.0 2e-24 MSIMSNAKRALAIAAAAATLLSMAACGSSNAASGKSDSSGAASSGKIEVVASINQWGSVA EDLGGSNVEVTNIMTKTNVEAHDYEPTSQDVAKFGTAKVAVVNGADYDPWATKAAQPTKA TLVTAAETAGIKEGDNPHVWFSAKVRSNTADAITAAYQKADPSHKDDYAKLNKEWHAKED QLESKIKETSAKTEGLPYAATESVAWYLADDLKMTDATPKGYAQASANESEPTPADIKDF QDTLKAGFIKMFVFNSQEANSTTDQITGAAKDANVPIVELAEQMPKQYTNLLDWMSALVD QFAAAVK >gi|316915202|gb|ADCN01000044.1| GENE 10 5403 - 7478 2854 691 aa, chain + ## HITS:1 COG:SPy0793 KEGG:ns NR:ns ## COG: SPy0793 COG1368 # Protein_GI_number: 15674836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Streptococcus pyogenes M1 GAS # 86 682 261 813 824 280 32.0 6e-75 MSENTSNTTTVKPHFKLWAKKVEANEVTPQHPHKPFPGWVYGVLFVIFDIIVVTALEVGV SSSSTRVQLSSPTVGFGFVSKMWTDGNFVFVLNVILVALLYLMLLMLFNRFWTASIVILA VGIIVAAIEHFKVEIRYEAILPADLGFLGSNTGNMLTFIPAGAHVTILVALGAFAALLAL ILVLRHFDGRKGRMIRTDNLSLNLTSRLILLLLPILVFALYCIHVSTTDSLANKFSRALG DTPSMWDSVYDAQRNGPLVAFTRQLNPKIMDKPSNYSEETMKKVAARYQKEAETINASRT NNLTDLTVVYVLSESFSDPSRVPGLKTNKDSMPNIRKIKAGTTSGLMLSSGYGGGTANLE YMGLSGLSMANFDSSLSSPYQQLVPSQHWTPTINQMWGAPANSLGYHPYESSMYSRATNY KKFGFSHFYTLTGPDVIKYQDKIDESPYVSDKSSYDSALEGIRSGKTNKFIQIITMQNHM PYHEWYENNDYTAESTTGTPLGDDEQQSIETYQKGVEITDQATQEFLNELDALDKPVTVV FYGDHLPGIYSSASEDDNNSLALHLTDYFIWSNKASSSQGNKASDAAYSSPNFFVAQAAD HMNAKVSPYLAFLTEMHSKIAAMEPPVVNKIQGWDRIPEGQNIYLDQNGNPMSTDDFDKE TKQLLADYKLIQYDITAGKNYLKDTDFMTLP >gi|316915202|gb|ADCN01000044.1| GENE 11 7599 - 9236 1474 545 aa, chain + ## HITS:1 COG:alr3672 KEGG:ns NR:ns ## COG: alr3672 COG1012 # Protein_GI_number: 17231164 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Nostoc sp. PCC 7120 # 4 301 11 307 460 278 46.0 3e-74 MTNQTFEQLKKTYESGRTRPLAWRRAQLNALRRLVTENRDAFVSSAMADLGKPAAETVLM ELNLVAGEAQFVRNRLSLWTARHPKAMHWMLQPAAGWTIAEPKGVVLIISPWNYPVLLAL EPMADALAAGNAVCLKPSELSPNTSKLLAELVPQYLDSEAVRVVEGGPKETGELLKCPFN HIFYTGGGHVGKIVMRAAAEHLTPVTLELGGKSPCFVDRTADINVAARRIAWGKFTNAGQ TCVAPDYVLATPDVAEALAERIAVAITEFYGEDPKASPDFGRIINDRHFERLCKLLPVGT VPPEEPSSPLVQVASAVGAAMDMVGRRFNAVTTGRGGAGEMAGSANNAAKPTAGSNMAAA DDGATASAAVEPSEIHKVPGVFDLAGRIVCGGKVDRAARYIAPTVLYGTSPDAPVMKEEI FGPILPILVVEDAESAIRFINKRSRPLAAYVFSRDHEVRLTFERQTSSGALGYSLPLGHL LSSRLPFGGVGASGIGTYHGKAGFLTFSHVKTVVTKPQFPDTLRLVYPPFNEAKAKLFDI IAKFS >gi|316915202|gb|ADCN01000044.1| GENE 12 9610 - 10878 1988 422 aa, chain - ## HITS:1 COG:SPy0032 KEGG:ns NR:ns ## COG: SPy0032 COG0151 # Protein_GI_number: 15674274 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Streptococcus pyogenes M1 GAS # 4 422 2 420 421 464 55.0 1e-130 MGQKVLVIGSGAREHTIAYTLLKAPSIDEVTVAPGNPGMLKDGIHTTQLSQSNHAALIEF VKNNGYDWVFVGPEVPLIEGIVDDFAAAGIKAFGPSKAAAQIEGSKDFAKQLMDRHNIPT AQYKTFSDLEMAQDYVHEHGAPIVIKADGLAAGKGVTVAMDEHTAQRALEDIFIDHRFGS AGAKVVIEDFLDGQEFSLMSFVNGTDFWPMPISQDHKRAHDGDEGPNTGGMGAYSPVPQI PQSVVDEAIEKIVRPTVEGMAEEGTPFTGILYAGLIATADGPKVIEFNARFGDPETEVVL PKLTSDLGAGISAILDGETPEFTWDESNATLGVVIASNGYPENVIKGARVPEIEVDEDSH VYYAGVASDEHGNLVANSGRVLLVETSAPDIKSAQDKVYAIIDKLELRGLFYRHDIGFKA LK >gi|316915202|gb|ADCN01000044.1| GENE 13 10905 - 11942 861 345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 5 340 10 340 354 336 51 2e-91 MPKAYENAGVSVEAGYEVVKRIKSHVARTNRPGVVGGIGGFGGLFDLASLGYKEPVLISG TDGVGTKLMVAKLANKHDTIGIDCVAMCVNDIAAQGAEPLFFLDYIACGKNDPALLEQVV AGVADGCVQAGSALVGGETAEMPGMYDEDEYDLAGFSVGVAEKSAIVDGSTIAEGDVLIG LPSTGVHSNGFSLVRKALFEQAGYTVDTELDELGGEKLGDVLLTPTKIYVKALSPLFKAG VVKGVAHITGGGFIENIPRMIPDGLAAEIELGTWPVLPIFDVLEKAGNIDHKEMYNIFNM GIGMVLAIDLARKDEALKLLADNNEPAYVLGQIAADTTGTQIVLK >gi|316915202|gb|ADCN01000044.1| GENE 14 12062 - 13573 2022 503 aa, chain - ## HITS:1 COG:SPy0026 KEGG:ns NR:ns ## COG: SPy0026 COG0034 # Protein_GI_number: 15674270 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 472 1 472 484 710 69.0 0 MSAELEDIHEECGIFGVWGHPDASRLTYFGLHALQHRGQEGAGIVSNDNGHLIGHRGLGL LTQVFGDEREIERLKGNCAIGHVRYATAGSGTTDNIQPFIFRFHDGDVALCHNGNLTNCP SLRRKLEDEGAIFHSNSDTEVLMHLIRRSMQRTFMDKLKEALNTVHGGFAYLLMTEDAMI GALDPNGFRPLSLGKMKNGAYVLASETCALDVVGAELVRNIRPGEIVVVNDHGYKIVQYT NNTQLAICSMEYIYFARPDSDIYGVNVHSARKRMGARLAAESPVEADMVIGVPNSSLSAA SGYAEAAGLPNEMGLIKNQYVARTFIQPTQELREQGVRMKLSAVRSVVKGKRVIVIDDSI VRGTTSKRIVQLLKEAGAAEVHMRISSPPLKYPCFYGIDISTTKELIAAKMSVEEIREYI GADSLAYLSLDGLVESIGLNADAPYGGLCVAYFNGDYPTALDDYEADFLKSLTPEDRVRL PEFALYKSKYIGNEYNTVQPDAE >gi|316915202|gb|ADCN01000044.1| GENE 15 13977 - 14762 564 261 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 21 257 1 240 245 221 45 4e-57 MSEMTNITTEASDSPVSNKTVLRLDDVRKSFGNTQVLRGISFDIHQHEVVALLGPSGSGK STLMKCVNLLEQVDDGQIWLGNTDITDPRADQDKIRARIGVVFQQFNLFPHMSVLRNVTL AAIKVHHWSKDRAETRAMELLERIGMRDKASAYPDQLSGGQQQRVAIARALMTDPELLLL DEITSALDPMLVGEVLNMVAELKAQGTTILMATHEMSFAHEAADRIVLLRHGVIAENGTP AEVMDESQDPETIEFFSHFRH >gi|316915202|gb|ADCN01000044.1| GENE 16 14759 - 15508 938 249 aa, chain - ## HITS:1 COG:alr3187_2 KEGG:ns NR:ns ## COG: alr3187_2 COG0765 # Protein_GI_number: 17230679 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Nostoc sp. PCC 7120 # 33 226 19 214 240 115 35.0 7e-26 MFVVVIVIGLKLSPGWPRVKETFFSGEYFVKSFPHVLDGLWLNIRVLLVAVVGVAILSTL IALVRTSRSPILFPLRILALIYTTVMRGVPIIVVLYLIGFGIPGLGLFGRIDPSVLGTIA VVMGYSAYVSEVLRAGFNDVHPSQRASARSLGLTSGQTTRLIVIPQALRKVAPALMNDFI SMQKDVGLISVLGAVDAVRAAQIDVASTYNFTPYVVASLLFILMSVPFILLNDWYTERLR KRELSGGTV >gi|316915202|gb|ADCN01000044.1| GENE 17 15756 - 16619 1565 287 aa, chain - ## HITS:1 COG:SMc03864 KEGG:ns NR:ns ## COG: SMc03864 COG0834 # Protein_GI_number: 15967000 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Sinorhizobium meliloti # 1 278 1 265 269 89 31.0 7e-18 MFNKRHIVRTIAATVSILALSFTAACGSGQSTASNSTDSDDITQQTYKPGKLTIATGQPA YEPWVMNDKPESGEGYEAAVAYAVADKLGFKKSDVVWTRTAFDTAIAPGAKDWDFNIQQF GITDERKKAVDFSSSYYNDSQSVVVKKDSKFANATKVSDLKDATVGVMVGTLAYDYAKAN IKDDIQTFNDDAALAQALDAGQIDALVTSTVECVYMVQSEQVKDAKVLGRLPDSEDKSGM GIVLPKDSKLTAAVTKAVDDLNADGTIKKLQDKWLAEYTTDLTELKK >gi|316915202|gb|ADCN01000044.1| GENE 18 16821 - 17291 507 156 aa, chain - ## HITS:1 COG:RSp0729 KEGG:ns NR:ns ## COG: RSp0729 COG3542 # Protein_GI_number: 17548950 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 10 156 5 147 172 82 35.0 2e-16 MSVALQDMSPYARSIVERLGLETHPEGGWYTRDWQSPHTDEASSRPLSSLIYFLLPEGDA SAWHKVDADEVWLWHGPASVKLELGGSDETPESDESKRTVITLGSGITTDQADVTVSGHA VVPAGVWQRTVPGQGDALVSCVVSPGFVFDGFTLEQ >gi|316915202|gb|ADCN01000044.1| GENE 19 17361 - 18734 1225 457 aa, chain - ## HITS:1 COG:MK0366 KEGG:ns NR:ns ## COG: MK0366 COG0402 # Protein_GI_number: 20093804 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Methanopyrus kandleri AV19 # 76 424 56 372 431 110 29.0 6e-24 MTDNTWPTVDTELIDDVTLYSAKLIIPVTGPVIIDGAVAIHGDRVVHVGKRRWVLKALKQ EMTAHGTIHERHWDGVLTPGLINAHTHLQYSGMVQVGQGTYDRFRAWELAFNEVYAEAQK TQPWKQWAEDGARQMVESGTTAAADIVTDLDAAGALASQGMHGIAYWEVMGWHNAEWMEK GRTELIRQLRRMNEEQLPNLGISPHAPYTLESEPFVDLPDIARQLNMRLHIHLAETPLEA GTYPPVLTTYSAADWSDHDWESYRQLKEVGKGASAIQFVDQLGSLGPDVHIAHGVWANGE DRRILRQRGVGVALCPRSNRITNTGKDAPVREYLEEGNLVSVGTDSLSSTPTLDLLDDVS MLYDLAREQGYASDDLTHRLIRMMTLGGAASMGMHVGRNRIGQINAGALADFAFFDIPVD TSSPAGIEETLETLVRHGAGTNRATVISGREAYNNAW >gi|316915202|gb|ADCN01000044.1| GENE 20 18774 - 20276 1061 500 aa, chain - ## HITS:1 COG:Ta0469 KEGG:ns NR:ns ## COG: Ta0469 COG0499 # Protein_GI_number: 16081588 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylhomocysteine hydrolase # Organism: Thermoplasma acidophilum # 86 471 1 389 410 232 35.0 1e-60 MRTMGNMKKSITADSDFAAWAAARSQKTNRSLAGARLAIPEPQKHAEIKSQAQQWGMTVE DATMTDEHNEEFLCDGTQSIDSITDMRKASGLEAMEYAEQHMPVLRDTMDSLTTRVDFSG IRIAVCLILEPKTAILLRKLKAAGAIVGVYCGPDSTDPRVAEQLRREGITVESSRDWTAE QAHEAALHLLDEIQPDIIIDDGASFARLASLERPELTANLIGVAEETTSGVRAFQQMQEA GALTYPVVAVNDSVLKTGFDNAHGTGETCVTTMQRILGEHAFDGKNVTVIGYGPVGQGFA RRIRALGAEVTICDIDPVASLKAVFDGFAAQDIDEALPCADMVVSATGVRHTVTLEHMRA MHEGAALAVIGGIANEIALDEVSDFTPQVNRDTVQLNVPDGPTLTLIADGDGVNYTVGGG NPIEIMDLSFAVQASAVAYLLEHRGTLDHTLIRLDAATDQRIAASALKARGYRASHAVED NGYNWRLTRFAENDRENADR >gi|316915202|gb|ADCN01000044.1| GENE 21 20441 - 22030 1238 529 aa, chain + ## HITS:1 COG:SA1196 KEGG:ns NR:ns ## COG: SA1196 COG0389 # Protein_GI_number: 15926944 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 15 359 13 307 420 165 31.0 3e-40 MGSGTVSTQREHTYIAIDLKSFYASVECVARGLDPLTTHLVVADETRTDKTICLAVSPSL KNYGIPGRARLFEVKQRLNGVNIERAVHAPGGRLIGESCDACDLERSPGLKASMVIAKPR MAHYLEISGQIYGIYLKYAAPEHIHVYSIDEVFIDATPYLRSLGMGPHAMARTIVREILT KTGITATAGIGSNMYLAKVAMDIVAKHMPADKDGVRVAELNEMSYRRLLWDHRPLTDFWR VGRGYAKKLEHAGLMTMGDIARCSVGRASDYYNEDLLYRMFGVNAELLIDHAWGWEPCEI ADIRSYEPGAHSISSGQVLTGPADYATARLITKEMADALALDLVDKSVLTNRLTLAVGYD IGSLDSSKLDSCADYAMKRAAERAAKSYQGPVTIDRFGRKVPKSAVGSIGLGDFTSSSAR IREAMTMLYERIVDSRLLVRRLTVIADDVATPEELAAGKRYEQLDLFGDDGAQSYGSDST SEKDGEHDIQRALLDVKRKFGRNAVIKAMDMEDGATGQDRNRQIGGHRA >gi|316915202|gb|ADCN01000044.1| GENE 22 22027 - 22245 312 72 aa, chain + ## HITS:1 COG:no KEGG:Blon_1950 NR:ns ## KEGG: Blon_1950 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 72 1 72 72 114 98.0 1e-24 MTLQETRAYDDIINLPHHQSRKHPHMSRHQRAAQFMPFAALTGYNQVIEQTAKNAETAIA QAEAQGDTDFGA >gi|316915202|gb|ADCN01000044.1| GENE 23 22279 - 23256 1611 325 aa, chain - ## HITS:1 COG:DR2317 KEGG:ns NR:ns ## COG: DR2317 COG0667 # Protein_GI_number: 15807308 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 1 314 1 311 315 265 43.0 1e-70 MKYRSVGKSGLKISEVALGSWVTDLKGTAAEDVAKETVKLAYDSGVNFFDCADAYSGGAA ERFLGKTLKQYPRKELVISSKVYFPTGEGVNDRGLSRKHIFESIDQTLKNMQTDYLDMYF CHRFDETTDLTETLRAMSDLVAQGKVLYYGVSEEWGSARLEEAQRIIDRYNLYPITVVQP QYNLNDRYIEHEIMGTCRKLGIGITTFSPLAQGLLTGKYRKGQPLPAGSRATWQSDHQIN DLLTDENLDKVEQLRKVADELGTNLPVLSMAWILQHPEISCVIAGASKPSQLENNMKAAG FVIPADAMAEIDKITGFHRFERHVG >gi|316915202|gb|ADCN01000044.1| GENE 24 23364 - 24329 635 321 aa, chain - ## HITS:1 COG:STM3121 KEGG:ns NR:ns ## COG: STM3121 COG0583 # Protein_GI_number: 16766421 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 263 1 246 292 92 30.0 8e-19 MNFLSIEYFAAVASEHSFSKAAKRLGITQQTLSANIAALERELGCTLFVRHVPLELTYAG TVFARYAQRFRRDRDALGQEMRDIAGDQAGVLRVGVAYTRSRAIMPPIVKAMQRDCPNII VELIEGRNDQIQQWLANGDLDLAVADFAGKPAGIELMDFYNERMVLVLAQSLWMDLAATG GAANDQVDAVRTAPDERAIAAGDLSSLEHCPFLLGSPQDIDGRIADLLFRRAGFEPKVTA RSDNVLTLLELCHYGMGACLCPERFLPALLDGERLRTLRVLDCGPDTAYAIQFGVPATSY RWSVIDDFIRCAREVTTGVSQ >gi|316915202|gb|ADCN01000044.1| GENE 25 24223 - 24474 178 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFALSVCCVIPNRFAALLKLCSEATAAKYSMLRKFMAILPCVWRLRGVCMTCRGANQCHS IKPVIDISLVCISPVILGHGSCE >gi|316915202|gb|ADCN01000044.1| GENE 26 24548 - 26062 888 504 aa, chain + ## HITS:1 COG:FN0978 KEGG:ns NR:ns ## COG: FN0978 COG1757 # Protein_GI_number: 19704313 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 7 466 7 431 431 273 36.0 5e-73 MLEAGTMLLFCAVLFASVALGWSIIPALFVGVLLFMGYGLVRRCSLRAMASRAAGSVRSA GTVVVAFVLIGVLTSLWRASGTIAFIVAHSTAVIHAATVIPLSFLLCSAMSVLVGSSFAS AATMGTICMSLGLSMQANPVMLGGAILAGVYVGDRCSPVSTSALLVKQLTHTNLFNTIAR MLRTGAVPFVLSCVVYVAAAVVEWLCASGGSGFGAASAAATAGSAGSARAAVSTNASSIT DIGGLFSSAFDLHWLTLVPALLVIVLALLRVDVRLLMLASIAASVAVCVGVQHMEWAELL RLLIFGYHAQNPQVAALLDGGGILSMLTVMATVCISSAYAGIFAETRMLARLQQVIEMLG HRIGACGATMITATCAAALACNQTLTIMLTHQLCGGLYGDDESERSAQAIDLEDSAVVIA PLIPWSIAGAVPLATINAPTLSLAAATFLYLLPLSRMLASAVRRRSGFRTRHRSQNQNPG LAIPHRPKPMLHMFAHGFHPKSGD >gi|316915202|gb|ADCN01000044.1| GENE 27 26076 - 26735 580 219 aa, chain - ## HITS:1 COG:no KEGG:BLD_0864 NR:ns ## KEGG: BLD_0864 # Name: not_defined # Def: putative Zn-finger containing protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 219 1 219 219 341 99.0 1e-92 MKHCDACTVDFTGDMARCPLCQNELRGEASPAAFPAQQIYLRPRRLAVEIITFVTGAILL LHGFFSYLFSWPIPIASASAAALIISVLFINSAILHVPRPLRLMFRYFYIMLAIALVWFV ATMNHVVTMFVIPITCLVSLVFDVVLLIVLRAKAIDEYAKYLAFDIVAGLMPLTFIPLGW APWDVLVMVSGLVSLLVLLGLLVFARRQLFSEFGKQFSA >gi|316915202|gb|ADCN01000044.1| GENE 28 26732 - 28102 1546 456 aa, chain - ## HITS:1 COG:no KEGG:BLD_0863 NR:ns ## KEGG: BLD_0863 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 456 1 456 456 914 99.0 0 MARRTWYRLDNIGKFYSSQAGRSSQTVFRYSADLADDIDPDILQHALDHAIAQFPSFNVH LLNGMFWHYLEQSDGRPLVEPEHLPICSRLHYGPKSMLFRVSYFRNRVNLEVSHIISDGR GAINLFKSLLHAYIAERYDVPGVPSDYDGSDSDKAENSFDKYYEKDKAGAAPGTKIYRLA GPIDRAAPTFMEYHVSASKVLGAAHQCGVSLTSYLIAAILCAIRDVMPSRARNRAIRVDI PVDLRAFFRSETVRNFYGMTYVAYTPAEIEADEDSAKTSATSPDAAGDGQQSAARTAHGN GMGGLLTDEPLADIARHVQEQLGHATSRERVESHMNRMIALEKNPVLRLAPSPAKDWVLE LARFIADRETTTTVSNLGRVTLDERLARHVRSVSFLTTPASLNFTVCSFGDDLSIGISTI YHDLNVIKNLCRILAAQGISGRMNIAGVHVEKGASA >gi|316915202|gb|ADCN01000044.1| GENE 29 28075 - 29379 896 434 aa, chain - ## HITS:1 COG:SSO2517 KEGG:ns NR:ns ## COG: SSO2517 COG0657 # Protein_GI_number: 15899253 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Sulfolobus solfataricus # 139 383 21 227 251 133 36.0 8e-31 MPINEALFAAMKAASYIKPNAGKSYKLQRVAEELIAKQAPDNPKCRVEDAFAPMADGYAV PLRVFTPLVAYGAPLPEALEESSANGTPVASAISAILPAVLPKVLPKILIKESTSSGNAD GISGNANTELPSVTPRGTILFFHGGGWTTGGINLYTQACAHMAVRLQRRVISVEYRLAPE YRFPTAVEDCYEVARQLFAGELPISGVGGGTVAAVDHPQSASPTAPAGGGDISETIPAPD PDSIVLFGDSAGGNLAAAVSLMARDRGEFMPRTQMLLYPVVGNDYNPEASPFESVRTNGT DYILTAQDMADYIDMYRSSVADLTNPYFAPLTAHDLSNQPRTLVLSAEYCPLRDEDEAYA RRLQLVNDNVSCYRIHDGIHGYLLNTSAVGLVATTYRIIEHFLDGTPLEPAPGTGTTANA PEGGDAWQDVLGTD >gi|316915202|gb|ADCN01000044.1| GENE 30 29516 - 33250 5895 1244 aa, chain - ## HITS:1 COG:CAC1655_1 KEGG:ns NR:ns ## COG: CAC1655_1 COG0046 # Protein_GI_number: 15894932 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Clostridium acetobutylicum # 2 955 5 966 985 970 52.0 0 MVFRVYVEKKPGFDVEAQQLAGELRTILGLTGLKALRIVNRYDVEGISQELFDQTVPTVF SEPQVDNVAYDLPDFAGAKVFATEFLPGQFDQRADSAAECIQLISQGERPTVRSAKLYAL EGDLTDADVDTIKHYVINPVEAREASLETKETLKTQVPVPGKVETIADFNEMDAEAGQKF IDERGLAMDLADLEFCQKYFSEEGREPTITEIKVIDTYWSDHCRHTTFGTELDEVTIDDA TVKAAFERYLAMRHELGRDAKPVCLMDMGTIGAKWLKKNGVLTGLDESEEINACTVKVKV DVNGHDEDWLFLFKNETHNHPTEIEPFGGAATCIGGCIRDPLSGRSYVYQAMRVTGAADP TVPVSETLEGKLPQRKLVTTAAAGYSSYGNQIGLATGQVDEIYHPGYVAKRMEVGAVVAA TPADHVRRETPAPGDKIILLGGRTGRDGIGGATGSSKAHNVESLELDGAEVQKGNAPVER KLQRLFRRGDACRLIKRCNDFGAGGVSVAVGELADGLFVDLNTVPKKYEGLDGTELAISE SQERMAVDVAAEDVDEFLAYAREENLEATVIATVTEDPRMVMTWNGDKIVNLSREFLASN GASKHQTVHVEEQQSYETPWGEGTLAERMNKLVTDINVASNKGLSERFDSTIGAGTVLMP FGGKRQLTPNMAMVAKLPVFGETTTASAMAWGFNPYIMSKNQFTGAYLSVVESLAKLVAA GFEHEKAYLSFQEYFEKLRDEPERWGKPAAAVLGALMAQVDLGAGAIGGKDSMSGSFEDL DVPPTLISFAVAVGNMKRATSPEFKDADHRIVRIAPRYLADGLTPDKDALLEVFSVIEEL TDFHDALAVSTPGYGATAEALFKMTLGNRIGVTLNNSIAVDDLFTPAYGSFIVELSDDAK LPAVSNLVEIGEIGTTTSEYVFKAAGETLDLDAVQEAWESGIESVFPYRSKGEDKGATVE TIDFHAPKKTVYVGSSVAKPHVVIPVFPGNNCEYDSAAAFERAGADVTTLIVNNLTPAAV AESTQALVDEINKSQIVMIPGGFSGGDEPDGSAKFITAFFRAPAVTEAVRDLLKNRDGLM LGICNGFQALVKLGLVPYGDIVPMTDACPTLTFNTIGRHQSRLVRTRVASDLSPWLSKTS VGDIHTVAISHGEGRFVASDEVLAQLRANGQIATQYVDETGTPGMDLDVNPNGSLLAIEG ITSPDGRVFGKMGHSERSGNGLYVNVPGNKYQPIFEAGVEYFAA >gi|316915202|gb|ADCN01000044.1| GENE 31 33313 - 34065 1270 250 aa, chain - ## HITS:1 COG:BH0626 KEGG:ns NR:ns ## COG: BH0626 COG0152 # Protein_GI_number: 15613189 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Bacillus halodurans # 1 241 1 237 237 242 51.0 5e-64 MEKLEKLYEGKAKQLYATDDPEVLWVEYKNTATAGDGEKKEDFTGKGRLNNLITTIIFDL LKKRGIDSHLIKRVDDTGQLVRKVNMFPLEIVLRNVAAGHFCSRLGVEEGLPLKEPVLEY FLKNDDLHDPFVNDDDLVALGVCTREDLAEIAPLARKINEALIEIFAKIDVKLVDFKIEM GRATDGTLLLADEITPDSCRLWDQKDHSGKVEHLDKDLFRRGLGSIIPAYEEIEERLAEL AKSEGIEVAE >gi|316915202|gb|ADCN01000044.1| GENE 32 34458 - 35768 1343 436 aa, chain - ## HITS:1 COG:PM1053 KEGG:ns NR:ns ## COG: PM1053 COG0027 # Protein_GI_number: 15602918 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Pasteurella multocida # 27 435 4 393 393 330 50.0 3e-90 MTSTSSPAIPAETSAVSPATRAANRPLGTPLGKHPTRVLFLGAGELGKEVAIELMRLGAW VCAADSYAGAPAQQVAHEYRALDMANAAELQALFDEIKPDIIVPEVEAIATDVLAGTAAA GAQVVPSAEIAAICMDRERLRVLAHEELGLPTTPYRFAGSLEELRAGASEVGYPCVVKPV MSSSGHGQSVVRSADAIDAAWTEAQEGRRAADEGDVSRVIVEALAPLERELTVLTVSSSA GIVTCTPIGQRQESGDYRESWQPATEPDGEAERARDIARTAVEGLVAKAQAAGETGWGVF GVELFVLTDGSILFNEVSPRPHDTGMVTMASQRLSEFALHARAILGLPITPEHVALTIPA GSVAASHAIVVAGDGEAEFTDVAAALAEPGTDLRIFAKPEVHGHRRMAVALAVGESEADA RAKAGLVADALTITVE >gi|316915202|gb|ADCN01000044.1| GENE 33 35969 - 37129 1215 386 aa, chain + ## HITS:1 COG:jhp0963 KEGG:ns NR:ns ## COG: jhp0963 COG0438 # Protein_GI_number: 15612028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Helicobacter pylori J99 # 14 384 1 375 389 241 34.0 1e-63 MRENGIEESIDRPLTIALVVDTVGNQGNGTSNSALQWAAELERQGHHVRLVGIGAPEYPA RVNKVPLVSWVAAKQLMQFAEPSDTLFRTAFQGVDVVHIYMPFKFGRRAAKVAHQMGIPV TAGFHLQPENVLYSAGPLRRIPGISSFLYWLFKHWLYKHIDHIHVPTEMTASLLRAHGYK AKLHVISNGYSPVYSPKKPADPDASAPVPFRVIASGRLASEKDQITLIKAVSMSRHAGDI QLVIAGTGPLKQYLKFRAGRLLARKADIGFHKHADMPDLLRSGDLFVHCSIADIESVSVI EAMACGLVPVIAASELSAASQFALIDESLFPVRDAALLARRIDWWIAHQAERAEWGEKYA EYTKAHYSVEASVHKFVDMERKAIGE >gi|316915202|gb|ADCN01000044.1| GENE 34 37066 - 37191 59 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRELATAGGLRERPLRKREGSYSPIALRSISTNLWTEASTE >gi|316915202|gb|ADCN01000044.1| GENE 35 37276 - 38301 1687 341 aa, chain - ## HITS:1 COG:SA1154 KEGG:ns NR:ns ## COG: SA1154 COG2008 # Protein_GI_number: 15926897 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 374 52.0 1e-103 MLSFENDYSRAAHPAVLEAVAEANNHLYSGYGSDELSDQAKAKIREACGQPDADVWFLVG GTQTNQVVIDTITPAYAGVVAVASGHPNVHEAGAIEFSGHKVLTIPQHNGKMDPTELDEF CKTFYADGNYEHMVFPGSVYVSQSTEYGTIYSKAELQAIADVAHKYDMPLFVDGARLGYA LTTTGSDMTLADLATIADVFYIGGTKVGALFGEAVVFTKHNTPKHFLTLIKQHGALLAKG FVLGAQFDALFTDNLYFKIARNANEAADRIREALRAKGYTLTFEAPTNQIFVTMDQPIID RLEREIKLGFTEKADDTHTVMRICTSWATTPEEVDQLIELL >gi|316915202|gb|ADCN01000044.1| GENE 36 38863 - 39924 1846 353 aa, chain + ## HITS:1 COG:BS_yocS KEGG:ns NR:ns ## COG: BS_yocS COG0385 # Protein_GI_number: 16078995 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Bacillus subtilis # 1 327 1 318 321 249 45.0 6e-66 MEKVKAFADWLTKWFTVIVIVWAVFNYFVPAASLWGKAYTGYMLGIVLFGMGLTLTLDDF KRILTQPLMVIVGTVAHFIIMPLIAVALCAIFHLSGPLAVGVILVGCCPSGTSSNVMSYL SRGDVALDVSIGILSTLCAPFMIPLLMQLLASQYVSVPTQSLFLNAVKVVLFPIALGVIC HMIFGKKIEKVTVALPIVSQVAILLIIGVVVAANGPKLFVASSLVAIPVVILHNLCGYSL GFGFSKLMYKIYPKGFRYAQQKAITFEVGMQDSALGATLALTSFATNPLAAVPSTFFSVW HNISGSILSSWWRNHDDKHEIHWDSDNGEKGSAKSTVSAAHPFDADKAAKVAA >gi|316915202|gb|ADCN01000044.1| GENE 37 40116 - 40497 296 127 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 127 1 127 358 218 92.0 7e-56 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVL Prediction of potential genes in microbial genomes Time: Fri May 13 13:28:25 2011 Seq name: gi|316915171|gb|ADCN01000045.1| Bifidobacterium sp. 12_1_47BFAA cont1.45, whole genome shotgun sequence Length of sequence - 35123 bp Number of predicted genes - 32, with homology - 30 Number of transcription units - 25, operones - 6 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 20 - 448 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 500 - 1630 1198 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 1676 - 1702 1.0 - Term 1721 - 1745 -1.0 3 2 Tu 1 . - CDS 1828 - 2427 751 ## BLD_1290 AcrR-type transcriptional regulator - Prom 2454 - 2513 4.2 + Prom 2436 - 2495 3.1 4 3 Op 1 1/0.143 + CDS 2622 - 5522 2326 ## COG2812 DNA polymerase III, gamma/tau subunits 5 3 Op 2 . + CDS 5548 - 6150 749 ## COG0353 Recombinational DNA repair protein (RecF pathway) - Term 5877 - 5911 1.6 6 4 Tu 1 . - CDS 6147 - 7280 916 ## COG3764 Sortase (surface protein transpeptidase) + Prom 7262 - 7321 2.2 7 5 Op 1 . + CDS 7523 - 7783 60 ## gi|291517611|emb|CBK71227.1| hypothetical protein 8 5 Op 2 . + CDS 7645 - 7941 185 ## gi|46190547|ref|ZP_00206509.1| hypothetical protein Blon03001272 + Prom 7981 - 8040 2.0 9 6 Tu 1 . + CDS 8169 - 9452 510 ## COG1373 Predicted ATPase (AAA+ superfamily) + Prom 9720 - 9779 4.1 10 7 Op 1 1/0.143 + CDS 9813 - 10577 1024 ## COG0527 Aspartokinases 11 7 Op 2 . + CDS 10657 - 11199 825 ## COG0527 Aspartokinases + Term 11230 - 11274 9.6 - Term 11224 - 11254 3.0 12 8 Tu 1 . - CDS 11281 - 12375 1575 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 12448 - 12507 3.7 13 9 Op 1 . + CDS 12543 - 13163 743 ## BL0491 hypothetical protein 14 9 Op 2 . + CDS 13237 - 13407 283 ## BLD_1281 hypothetical protein 15 9 Op 3 . + CDS 13498 - 14964 1617 ## COG1409 Predicted phosphohydrolases 16 10 Tu 1 . - CDS 15085 - 15282 179 ## COG3464 Transposase and inactivated derivatives - Prom 15379 - 15438 3.4 17 11 Tu 1 . + CDS 15456 - 17372 3042 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases + Term 17391 - 17438 17.0 - Term 17378 - 17425 17.0 18 12 Tu 1 . - CDS 17444 - 19909 2910 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 19934 - 19993 1.8 19 13 Tu 1 . + CDS 20227 - 21378 896 ## BL0486 pre-pilin peptidase + Prom 21403 - 21462 1.6 20 14 Tu 1 . + CDS 21502 - 24588 4161 ## COG0550 Topoisomerase IA - Term 24512 - 24547 1.0 21 15 Tu 1 . - CDS 24734 - 24937 166 ## + Prom 24770 - 24829 1.5 22 16 Op 1 22/0.000 + CDS 24866 - 25486 615 ## COG0125 Thymidylate kinase 23 16 Op 2 1/0.143 + CDS 25483 - 26634 1321 ## COG0470 ATPase involved in DNA replication 24 17 Tu 1 . + CDS 26753 - 27307 824 ## COG1881 Phospholipid-binding protein + Term 27346 - 27399 4.3 25 18 Tu 1 . + CDS 27450 - 29051 2385 ## COG4690 Dipeptidase + Term 29124 - 29150 1.0 26 19 Tu 1 . + CDS 29211 - 30728 2229 ## COG2759 Formyltetrahydrofolate synthetase + Term 30768 - 30801 1.3 - Term 31054 - 31087 0.2 27 20 Tu 1 . - CDS 31125 - 31472 623 ## BLD_1269 macrophage migration inhibitory factor-related hypothetical protein + Prom 31457 - 31516 3.3 28 21 Tu 1 . + CDS 31650 - 32210 665 ## COG2246 Predicted membrane protein + Term 32223 - 32262 10.0 - Term 32215 - 32246 4.8 29 22 Tu 1 . - CDS 32259 - 33710 1894 ## COG0477 Permeases of the major facilitator superfamily - Prom 33908 - 33967 1.5 30 23 Tu 1 . + CDS 33952 - 34611 748 ## COG0406 Fructose-2,6-bisphosphatase + Term 34669 - 34695 0.3 31 24 Tu 1 . - CDS 34625 - 34942 117 ## 32 25 Tu 1 . + CDS 34827 - 35121 276 ## BL0473 hypothetical protein Predicted protein(s) >gi|316915171|gb|ADCN01000045.1| GENE 1 20 - 448 199 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 8e-15 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK >gi|316915171|gb|ADCN01000045.1| GENE 2 500 - 1630 1198 376 aa, chain + ## HITS:1 COG:Rv2252 KEGG:ns NR:ns ## COG: Rv2252 COG1597 # Protein_GI_number: 15609389 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Mycobacterium tuberculosis H37Rv # 6 345 8 306 309 102 28.0 2e-21 MSESERNERRRVVAMVGNPTSDKGRGAKVDAQVLGLLEEAGRAHNFDVIDITGTSFDDSL NQARERAHEYDYLVVVGGDGMIALGANAVGCSGKPLGIVATGSGNDFARGLKLPVNRIET AVEGIVGAIVRGSHIDVDMGRVTSLDGGYAVDPSTGEEYEYQESKSAEHPIDRYYAGMLS CGLDASINDRANHSHLPTGTMRYFAAVLVELTHMKRYGYHIKATLADGTTDERDIITPLL TIANSRHIGGGIEVSPYSCFSDGLLDLVWMDHVPNFGECAVAISNAYNGKLLASKVFGWK RIREIEVTRATEGDEPPVLMADGEYIGHLPFRVVAEDCALRVLVPPAVAAREVDSRQEVL NAIARDGRDPVTGQFA >gi|316915171|gb|ADCN01000045.1| GENE 3 1828 - 2427 751 199 aa, chain - ## HITS:1 COG:no KEGG:BLD_1290 NR:ns ## KEGG: BLD_1290 # Name: not_defined # Def: AcrR-type transcriptional regulator # Organism: B.longum_DJO10A # Pathway: not_defined # 1 199 1 199 199 374 99.0 1e-102 MSDTLDEKRPTRGDARRNAIVQAARKVCLEKGFSKITVSDIASEVGMTRSLFYHYFEDKE AVADAVLDNVIDEILTTLKQWNQARETGNVNKALDDIVHVLRSLIADESPFSNRMIQDGN AELYIKFIDRAADRIADYIAQTTVRDFEQMHGLPITNVHETFFTLIVGLISLIRSHPNIS DRTIKEVMAQTLHIESYVV >gi|316915171|gb|ADCN01000045.1| GENE 4 2622 - 5522 2326 966 aa, chain + ## HITS:1 COG:MT3824 KEGG:ns NR:ns ## COG: MT3824 COG2812 # Protein_GI_number: 15843342 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Mycobacterium tuberculosis CDC1551 # 3 389 1 401 578 380 55.0 1e-105 MALALYRRYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARC VNCAKGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARDR YKIFILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVP QEVMGPYLETICDKEGIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAAV ALLGFTPEALIGEAVDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTLA GDRAESVLSDTAEAEDMDDLHRQAKALGLGALTAMADIINTTLGAMTGAISPRMRLELLA ARLLAGSESGFATAAPAPASSGMPPAAASSTSTTSAASGTGASGFAGASRGGFAGASHGG FSGAARNQQAAAPQSTASHESVGGNGPVSDRPADSPSVQPAVATAAAGAAPAANAGWGAP AASPAVPAQPVTSPAASDNRSIDEKWDAAVAALPETIREYVSRDKVPTVKFGPNRKGLPC LSMTFDKSLSQHAFALAVDNSGKKAAAVVMDAVRNEFGANAVIAPSAVAANGERVESVKR MSPEQLAKVKQQIAMAKAGLAASSLGASLGIHMGSETKAPKPTATGQAEDADDSHRAGQS SASTAAKNWSDDDPWAKPAVSNASPQSADGFAPNEPAATPAPEEHHKKHVAVPDISDGVD PWAAPAAPVAPTASVASAGPTGQSTGQPATASSVTAVAGASDDPWNQTQSQAAVSPASQP AEADPWNQPYQQSPHDDPWNQPQGNHAQAAPQPGDDPWNQPQSQTPASSVPQTVSGNMSG DDPWNQPQSVPQPAAGDDPWNQPQAVPQSAPQATPHGDPWNQPQPAQPTPNADPWNSQPQ PQPKPQPQVAAEDDEYSMSDQSLGEATAMNLDDLKKLFEVKKVEQFAADDPKNPKNIQPA KKHSDE >gi|316915171|gb|ADCN01000045.1| GENE 5 5548 - 6150 749 200 aa, chain + ## HITS:1 COG:lin2850 KEGG:ns NR:ns ## COG: lin2850 COG0353 # Protein_GI_number: 16801910 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Listeria innocua # 3 199 1 197 198 244 55.0 9e-65 MALAYDGAIQRLIDAFGRLPGIGPKGAQRIAFYMLSAPEDEARDLAEAIEEVKAKIRFCD ICGNVCESSPCPVCADPRRDRSVICVVEEPKDVMSIERTREYHGLYHVLGGAINPMANVG PADLRIPGLLKRLEGDEVKEVIMALDPNIEGEATTSYLTQLLRPVGVKVTRLASGLPVGS DLEYADEITLGRALAGRREA >gi|316915171|gb|ADCN01000045.1| GENE 6 6147 - 7280 916 377 aa, chain - ## HITS:1 COG:SPy0135 KEGG:ns NR:ns ## COG: SPy0135 COG3764 # Protein_GI_number: 15674348 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Streptococcus pyogenes M1 GAS # 98 311 6 200 251 174 44.0 2e-43 MALLHRRSTSKRASQKMWENNAAMPDDASANDNVSSARPKPAAFVPTPFDEVIDISDLVA ERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQA EDKLTAARAYNKKLAESGQPILGEAVDPFAAAQGGSQASGEDSASKKDKEYQSLLNTGNG VMGTIKVPKQSINLPFYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMF TRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIVPGEDRVTLMTCTPYGVNT HRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLARRHKAARIIRHGA FWPWMRRKGESANDTLA >gi|316915171|gb|ADCN01000045.1| GENE 7 7523 - 7783 60 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291517611|emb|CBK71227.1| ## NR: gi|291517611|emb|CBK71227.1| hypothetical protein [Bifidobacterium longum subsp. longum F8] # 1 86 1 86 86 162 97.0 8e-39 MRLTSDKPLRCKGLQRIAKYGNMISRGVGDIWQSFQIGGYECIKREYVTSIKEALLLFSW MSVRRRAVGFVGVRGVPAYSVFRPKK >gi|316915171|gb|ADCN01000045.1| GENE 8 7645 - 7941 185 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|46190547|ref|ZP_00206509.1| ## NR: gi|46190547|ref|ZP_00206509.1| hypothetical protein Blon03001272 [Bifidobacterium longum DJO10A] # 46 98 1 53 53 92 96.0 8e-18 MHKEGICYLDKRGAIAVFVDVGSSSSRWFRRREGRSRVFCFPTKEMNHEERLSKSSFAGL PNVKGAVAEDARITDSPLRSELASVIREKMALSGHLSF >gi|316915171|gb|ADCN01000045.1| GENE 9 8169 - 9452 510 427 aa, chain + ## HITS:1 COG:MT0627 KEGG:ns NR:ns ## COG: MT0627 COG1373 # Protein_GI_number: 15840000 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 25 425 15 408 411 90 27.0 8e-18 MAGESSEIQRGEYLPRVADGLLTQALQSSGAVQIKGPKWCGKTATAERQSASQVFMQDPD RSATLLALADTKPSLILRGEEPRLIDEWQMAPQLWDAVRFAIDRGRGRGRFILTGSATPQ QEPAHSGVGRIARLTMRTMSLFESQESTGVVSLGELFDGNHDVSGFSDFDIENTAFALCR GGWPEAVVESRVNVALRMAADYVEELLDSDINRMDGIKRNKTWMRLIMRSYARNISSQAS QSTIAADMQGEPPSEGTLSDYLDALSRACVTEDLPAWNPRLRSKTAVRTSPTRHFSDPSI ACAVLHATPEKLLNDFETFGLLFESMCIRDLRVYADALGGDVFHYRDKTGLESDAVIGLH DGRWALIEVKLGEKQVDIAAAHLKKLADRIDQDHEGRPSFLMVLTATAAAYRRDDGVLVV PLATLAP >gi|316915171|gb|ADCN01000045.1| GENE 10 9813 - 10577 1024 254 aa, chain + ## HITS:1 COG:MT3812 KEGG:ns NR:ns ## COG: MT3812 COG0527 # Protein_GI_number: 15843329 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Mycobacterium tuberculosis CDC1551 # 1 241 1 242 421 282 64.0 5e-76 MALIVQKYGGSSVADTESIKRVAKRVVETEKKGNKVAVVVSAMGDTTDDLIDQALSIDSN PPEREMDMLMTAGERISMSLLAMAIHAEGSRAHSFTGQQAGFFTDARYGAAHIKAVRPDR VKNALSLGDIAIVAGFQGINAKGDATTLGRGGSDTSAVALAVALGADICEIYTDVDGIFT ADPRIVPSARRIPSIDYESILEMASCGSKVLALRCVEYAQRFNMPLHVRSSFSRRPGTLV VPDGIDPRTLPNLD >gi|316915171|gb|ADCN01000045.1| GENE 11 10657 - 11199 825 180 aa, chain + ## HITS:1 COG:MT3812 KEGG:ns NR:ns ## COG: MT3812 COG0527 # Protein_GI_number: 15843329 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Mycobacterium tuberculosis CDC1551 # 7 180 247 421 421 136 44.0 3e-32 MGDLFPDLGPEAPVISGIAHDRSEALATVRGVPNEPGMAAKVFTELATAGVNVDMIVQAG ASVGTADISFTVPESAVKQVQNTLLDKQEVLGYHSFDVDTNVGKVAVVGVGMKTHAGLAA KFFQALSDEGINVLMISTSEIRIAALVPLDQLNDAVKALHTAYGLDADQIEAVVYGGTGR >gi|316915171|gb|ADCN01000045.1| GENE 12 11281 - 12375 1575 364 aa, chain - ## HITS:1 COG:CAC0022 KEGG:ns NR:ns ## COG: CAC0022 COG0136 # Protein_GI_number: 15893320 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Clostridium acetobutylicum # 4 364 3 360 360 437 57.0 1e-122 MSEKLKVGILGATGMVGQRFITLLENHPWFEVVTLAASAHSAGKTYAEAVGDRWKMETPM PEYVKNMVVVDGDDAESVASGVDFMFSAVNMPKDQIRAIEERYAKTETPVVSNNSAHRWT PDVPMVVPEINPEHFEVIEHQRKRLGTTRGFIAVKPNCSIQAYTPALAAWKEFEPREVVV STYQAISGAGKTFKDWPEMVGNIIPFISGEEAKSEKEPLKVFGHVDAAKGEIVPFDGDLK ITSQCIRVPVLNGHTATVFLNFGKKATKEELIDRLVNYTSKASELELPHAPKHFIQYLTE DDRPQVKLDVDYEGGMGVSIGRLREDSIFDWKFVGLAHNTLRGAAGGALECAEMLKALGY ITKK >gi|316915171|gb|ADCN01000045.1| GENE 13 12543 - 13163 743 206 aa, chain + ## HITS:1 COG:no KEGG:BL0491 NR:ns ## KEGG: BL0491 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 206 32 237 237 410 99.0 1e-113 MSIASVEAQKQLDRIVALGYPDVADISAAAFRSLARPLIGALEHSDLGSNILLVPTRELV SPESLIARTSINRMAGFTTMPPRDIASFLPQDGFMPPEGPFYLVVNPHTGTCYVNREPDV ARKLIDSDERLPLTLEEGLAIATQHPEWLLEKNGFNLLGSRSADGRVPSIWMSQNAPRLG AVWPNSRHTWLGNAYCTARRGVSLFR >gi|316915171|gb|ADCN01000045.1| GENE 14 13237 - 13407 283 56 aa, chain + ## HITS:1 COG:no KEGG:BLD_1281 NR:ns ## KEGG: BLD_1281 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 56 1 56 56 79 100.0 3e-14 MKVNKDGTFSGSYHDSDMGATGDGYLIGNDVDTLNGKALLNVTSGADKGYTFYDFS >gi|316915171|gb|ADCN01000045.1| GENE 15 13498 - 14964 1617 488 aa, chain + ## HITS:1 COG:CAC2806 KEGG:ns NR:ns ## COG: CAC2806 COG1409 # Protein_GI_number: 15896061 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 162 418 99 305 317 73 24.0 1e-12 MTNLRFREDGSFRVLQMADIQDGPNVLPDTIRLIREAIRKADPDLVVFTGDQIRGYDPAY IDTFLRRRGEEPGARVRAVTEVEAKLRGIKRRARNRVNNRLLAMKSDGSNPDAQQTASTA STTSALVYSTTSDPQDVPTTLDELMDETRDKVRRTFAGFLGPVIEAEVPFAATYGNHDFQ CGILADEQDGIYREFPGCLNPVDSLEPGTFALPIEASDGSGRVAMSVMMVNSGDYAGKPE ENDAQYPAYVVNPRGLDLADSDGYGTPSPEAIDWLGAVQSELGERNGDGKPVPAIAFQHI PPQEFYDCLKEVPAWTPNAVEGARTHAGHCYVLNHEICRPGSRLGEAIGCADENVGEVDA LREAGGYFALFCGHDHKNAFVGHAHGIDLGYAPTCGFECYGPKSRYRGIRLFEFHESNPA GYVTRMLTWGDLVGRYSSNEVRVWFEDHCVTGAISMRNELRRPQVFAVLAGAMSLGFMAV IRSLVKKR >gi|316915171|gb|ADCN01000045.1| GENE 16 15085 - 15282 179 65 aa, chain - ## HITS:1 COG:Cgl1042 KEGG:ns NR:ns ## COG: Cgl1042 COG3464 # Protein_GI_number: 19552292 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Corynebacterium glutamicum # 5 54 378 426 436 69 70.0 1e-12 MRGGRMGDVLAFFDWEHSANGPTEAINGRLETLRGIALEFRNLDNYITRSLLHADGFRRA IQTHL >gi|316915171|gb|ADCN01000045.1| GENE 17 15456 - 17372 3042 638 aa, chain + ## HITS:1 COG:MT3813 KEGG:ns NR:ns ## COG: MT3813 COG0119 # Protein_GI_number: 15843330 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Mycobacterium tuberculosis CDC1551 # 35 636 49 659 659 658 52.0 0 MGQDQSSVFDLAAVAAASNGGNNDPLLPPARFIGDPQKPSRMPYNKYAAYDKQIPFDYPE RTWPGKRLQRAPRWCSVDLRDGNQALVNPMDSERKLRFWNLLVSMGFKEIEVGFPSASET DFDFIRMLIERELIPDDVTIVVLTQCREHLIRRTYEALKGAKRAIVHFYNSVSVLQREVV FRKNKEEIKKLATDAAELCKDLENEAKGIDLYYEYSPESFTGTEPEYAVEVCNAVIGVIK PTPEHPMIINLPATVEMTTPNVFADEVEYVSTHLDDRDSVVLSLHPHNDEGMGVAATELA VLAGADRVEGCLLGNGERTGNVDLVTLGLNWLTQGIDPQLDLSNVPEIRKTVEYCNQIKI SERHPYAGNFVFTAFSGSHQDAIKKGLEARQVAAERAGADLDSFVWLVPYLPIDPKDIGR TYEAIIRVNSQSGKGGMAYLLKTNHNLDLPKRLQIEFDKIVQNYADTTKKEVKDEDIWRL FKDEYLPVEQSGMTAAGVVVGDTHDASLVPWGRLKLLKVAVSSGEDGSDTVLKARLLDRG VNVGVDAPVEREVSGIGNGPIAAFLNAISNFGVDASIMDYVEHTMSVGTDAMAASYVECQ VGEADDAQIVWGVGIDSSITTSALKSIISAINRFQRKR >gi|316915171|gb|ADCN01000045.1| GENE 18 17444 - 19909 2910 821 aa, chain - ## HITS:1 COG:ML2688 KEGG:ns NR:ns ## COG: ML2688 COG0744 # Protein_GI_number: 15828452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Mycobacterium leprae # 111 707 39 656 708 249 31.0 2e-65 MRVVTLTSNDCSRPTVTVDTMASYTRRAHSGGNGPALRQPRTAQSRAGHSAQEGPYTPQE SRSRHASHKASNSHRAPNRKKKNTGKGKHRVLKWVLGIFFSLIGLGLLAGIAVFAYLYTT TEVPQPEKFALAEKTTVYYADGTTAIGSYAEQNREIISCEGLPDYIGNAIVASENRTFYT DKGLDLKGIARAFINNVTKGTRQGGSTITQQYAERYYMGETTSYVGKAREAIMAIKIAQT ESKDEVLCNYMNTIYLGRNSYGIQAAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPAD NADMAKSRFKRVLNIMQEDGYITAKQHTDAKFPQTAAVAQQNEYAGPNGYLLDMVRRELV QSKAFTKEDLDTGGYKIITTIDKSKQDLMQSIGDTRLDDMPESLQIGGIALDPKTGEVLS VYAGSDYLSKQLNNADQAVFEPGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEV NNALENNWGNINLYQATANSVNTVFMNVNEHLTPKRTAAIAHEAGIQGDIDENSMYNVLG INALTVWDLAQGHSTIANNGVKNTLHMVSKVLDSNNKDMYNAPSNGTKVFDANDCALVQK AMQGTTTYGTAAGTSSMLGRPVAGKSGTANDEMASSFVGYTPSMMNVWAIWNPDDKGNPQ VVPAFSGYGVSSTGYPAHLFQEFMAQALQGTEAEQFPTAKDNGKIGGSDGTWGLGKGQSS GLSNNTNKQSTEDTQKQAEQDAQQKAAEEEAKKQQQAQEFAQQCLANPSYSTECPNYPGT TTGGDGNAGNNTGGDNGNNTGNDNGNSGGTGGNTGTNGVTQ >gi|316915171|gb|ADCN01000045.1| GENE 19 20227 - 21378 896 383 aa, chain + ## HITS:1 COG:no KEGG:BL0486 NR:ns ## KEGG: BL0486 # Name: not_defined # Def: pre-pilin peptidase # Organism: B.longum # Pathway: not_defined # 1 383 1 383 383 644 100.0 0 MNDAQTPRIRDPHAAVNLVGSGAAQPDSSSNVVDPLAALGPVSGSDASASTSGSLRDFRP LDMDDADGASDIDRGLARLDPLTVRPRISSRVLCVVFGLLLIAIGFGVWWGCVFTENGQS YDELVWKNLHNDVPSWATGVMNAVAQSWLVIAVSCTIAAIGIITALIRRRWWLAGQIAVF AVVCLAVTRIKGLLPRPFIINTESPAANSAPSGHTMLAAACAVILLLTVPRAVRALAGVI GVVWAVTVGVSVIYGQWHRPSDVAMSILLVAGLALLALAVTRKSGMDEPGRRVSSVSVQI VGSVLITGGLLLLAYSGYVIWQVVPGLNVSASWAVQGANVSAVVGIAGVAMLAFGLLLAL RQITAAPLSRLGLIGAPPAPPKR >gi|316915171|gb|ADCN01000045.1| GENE 20 21502 - 24588 4161 1028 aa, chain + ## HITS:1 COG:ML0200_1 KEGG:ns NR:ns ## COG: ML0200_1 COG0550 # Protein_GI_number: 15827005 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Mycobacterium leprae # 4 616 17 608 608 609 54.0 1e-174 MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKAKFGKFGVDVND GFKPYYIVDGDKKRTVSELKSALKNADELYLATDEDREGEAIAWHLVQTLKPEVPVKRMV FHEITKNAINASLNNTRDVDGNMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQS VATRLIVERERERMAFKRAPYWDIVATLSAPDALGERAEFSARMIALGGKRLAGSKDFGA DGQLTPDGFAANVRQLDEAGATAVAEALRTADFTVMSMETKPYRRRPQPPFTTSTLQQTA GNRLGMGARVVMRAAQSLYENGYITYMRTDSVTLSQEAITAARNAVSYHFGDKFLSAEPK QYATKTAGAQEAHECIRPAGSRFHDPDELASKLPGDQLRLYTLIWQRTLACQMADATGST ATVRLSAPAGPTEGEAVFQASGTVIEFPGFMKATGEGRKPKAAAPGAGAGSDQAAAAGKT DVKAVRGDASESNTSLPPMSVGQQVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRP STYASIISTIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYQFTAEMENGLDRIA HGEESGRDWLTHFYFGSGEGSARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRV GRYGPYLEDMEHLDVEGNPKRASLPDTIAPDELTVAVARDLIDNHSGGPRELGVDPVSGG TVEVRNGRFGPYVALVPPAEASAGAAGDTAGASAAKKGSKKASAAAASRPKMASLFKTMS PESLSLEDALKLLSLPREVGTYEETNAETGEVSECTVAANNGRYGPYLTKTGADGKSETR SLASEDEIFTVDIDKAKELFSQPKYGRGRGRGAAKPPLRDLGKDPNTGKNVTIKDGRFGA YITDGETNRTVPRQYTPESITPDDAFRLLAEKRAAGPSTRGRRGAGRAGGAEAVAGKGKK GGTSAAVSAQEAKRAERRAEVKKLANKGWSNQRIAEKLGSTPATVKKDVDWLTANEDYEH PAVIPKRG >gi|316915171|gb|ADCN01000045.1| GENE 21 24734 - 24937 166 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQPLDLRGLAHAIDTFKRNKQTAHAIDLSVRRRVAPNRQLNQLYLRFKGLIWSFLKVYFR FEGLLPK >gi|316915171|gb|ADCN01000045.1| GENE 22 24866 - 25486 615 206 aa, chain + ## HITS:1 COG:DR0111 KEGG:ns NR:ns ## COG: DR0111 COG0125 # Protein_GI_number: 15805151 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Deinococcus radiodurans # 3 198 4 201 206 167 51.0 2e-41 MSGLFVSFEGVDGVGKTTQVERLHAYLEAQGRTVVVTREPGGTALGKAIRQLLLHGVDGG AVDIAPRAEALLFAADRAQHVAETIRPALERGEVVITDRYLDSSLAYQAGGRELTPEEIR SLSMWATNNLLPDRTYLLDMDPALSHHRLEHAEDRMESAGDDFQSRTRQAFLDLAAAEPN RFRVIDASQSIEAVWAAIESDIKELA >gi|316915171|gb|ADCN01000045.1| GENE 23 25483 - 26634 1321 383 aa, chain + ## HITS:1 COG:MT3747 KEGG:ns NR:ns ## COG: MT3747 COG0470 # Protein_GI_number: 15843256 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Mycobacterium tuberculosis CDC1551 # 3 323 7 342 404 155 35.0 9e-38 MSVWDSLVGQKPVIDMLSRIAQGDPSQITQSWLICGPPGSGRSNMARAFAAALESPDHGM SAEPTRVTQQVLAGTHPDVTVLTTNKVTIGIDQVREIITTSEQMPATAPWRIIIIEDVDR MLERTTNVLLKEIEEPAEHCIWLLCAPSAQDVLPTIRSRTRIVNLAVPSTQAVAGFLTST TNVEPKVAQRAARLAEGHIGIAKLYATDERVMSDRDELVVGVLNLARASDAVLLAGNLID NAKAQAEADANRITAGQEAEFRRINGLAPSDRIPPKLRGAFNQIAKKDDVKRLVTRRTRD VLDRALNSIASIYRDVAVLQNNAEDSVGLINLENRSSITELSVRLNRAGAVTRLDEVAHA RKRLAGNGNPLLVFESLFCALIS >gi|316915171|gb|ADCN01000045.1| GENE 24 26753 - 27307 824 184 aa, chain + ## HITS:1 COG:BS_yxkA KEGG:ns NR:ns ## COG: BS_yxkA COG1881 # Protein_GI_number: 16080938 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Bacillus subtilis # 12 167 13 153 168 110 41.0 1e-24 MKISADFTVIPDDFAKAAAPEYFNGGVPVVSFPFYIDDVDPEARYLHWEFVDPDSIPVCG FEWIHWSVANLPIDALMYDFNDSHALAIPPDFSRQLPAMIPETVQGRNSSASKFLGRSTD PAVIMRYNGPQPPDKDHEYYLQVWATKKPLPGLNQGFWLNELLHALRNSGEVPDTDGIFL TGKA >gi|316915171|gb|ADCN01000045.1| GENE 25 27450 - 29051 2385 533 aa, chain + ## HITS:1 COG:SPy0713 KEGG:ns NR:ns ## COG: SPy0713 COG4690 # Protein_GI_number: 15674771 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Streptococcus pyogenes M1 GAS # 2 532 9 472 472 519 51.0 1e-147 MACTTILVGKDASYDGSTIIARNEDSANGEFNPKRFIVVKPEEQPREYKSVISHLTITLP DDPLQYTAVPNADLKEGIWGEAGVNEANVAMSATETLTTNERVLGADPFVEYTPAKGDEP EVPGGIGEEDFLTIVLPYVKTAREGVQRLGALLEEFGTYEMNGVAFSDSNEIWWLETVGG HHWIAKRVPDEAYVTMPNQLGIDEFDLEDALGDQEAHMCSEDLAEFIETNHLDLAVENTT PFNPRDAFGSHSDSDHVYNTPRAWYMQRFLNPYDEVWDGPDADHKPTSDDIPWARQPERK VTIEDIKYVLSSHYQGTPFDPYGQLGDERTRHMYRTIGINRQSQLAVMQIRPYRPQASRA IQWMAYGSNPFNTLVPFFPNVDTTPAYLEDTTTRVTSENFYWANRIIAALCDGAFRSTSN AVERYQEKTGAMGHRLVAATDEQIARLGLTAAEEAAQSAAEEEFEADNVDGDVQPMTPDE TIAALRNPEVREILAAANQTMADQLKEETEKLLDSVLYTRSMEMKNGFHMSDF >gi|316915171|gb|ADCN01000045.1| GENE 26 29211 - 30728 2229 505 aa, chain + ## HITS:1 COG:FN2082 KEGG:ns NR:ns ## COG: FN2082 COG2759 # Protein_GI_number: 19705372 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Fusobacterium nucleatum # 5 489 26 510 544 171 31.0 3e-42 MTTIEDFTSQYGLVQKIDAFGYMKYLAENPDAPRKHGKVVLVTADTPLKASRGEGKTTTT IALIDALNKRGIDATAVLRQPSMGITAAGSKGGASGGGKASLTHPELIDWGLCGEMGAIE AAQNLLVSFAEKAIDDGKLDTILVPRVSEVPSRSLRSTAVDYGKGNVPEKVVLTPTCELM QIVVLSRSMDEISERVSKMIAGTKDGKAVTFGEFVDLWRITGILADAVKPAKTETVNGSP VYVHGGPFANVSIGIPTLVSVEMACALHDVVIVEAGYGTDAGAQKWLDIACREYGAQWPS AAIVVTRASTWRDDPELAWRYPFHVQRLENLDIPTFPLINLWEGEDDQVPSLKATADELG FRTPIIGNLFRDGGEALVPQLDGFVDALQNGSMPAEPHSHKGMALTENAKWVAENAYGVP AERVIYKPGFTESVSEAMELCQSAGISLDNLAFVAVKSPATMTDNDRAPEEERTVTLKKV EVHAGAGLVHVNLTTSLTTPMPKIV >gi|316915171|gb|ADCN01000045.1| GENE 27 31125 - 31472 623 115 aa, chain - ## HITS:1 COG:no KEGG:BLD_1269 NR:ns ## KEGG: BLD_1269 # Name: not_defined # Def: macrophage migration inhibitory factor-related hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 115 1 115 115 228 100.0 7e-59 MPVIHTHVSVPTTPEQREALKAAYGKAITAVPGKSEGWLMCPFEDNMPIYFGGSDDQPAA YVEVNVFGRSVPGSAWEKLTESIMAALNSTLGIPEDRTYIRYTATTDWGWNGGNF >gi|316915171|gb|ADCN01000045.1| GENE 28 31650 - 32210 665 186 aa, chain + ## HITS:1 COG:ML0734 KEGG:ns NR:ns ## COG: ML0734 COG2246 # Protein_GI_number: 15827311 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Mycobacterium leprae # 7 157 24 175 228 58 30.0 5e-09 MRKLIEQLMKFGIVGVIAFVIDWGILNLLVGIFHMHNVLAATISFIISLIFNYLASMKFV FKHRDDMARWMEILIFVAGAVVGLFMNDAIIWISTYGMNHDAYVSQHAEYLLRTNIGKLV ATAVVMIWNFLIRKWLLDDTHTNAMNRLKSAENRLNAEELEAKWQNSFSHKLGIWSLEHT PKGWPK >gi|316915171|gb|ADCN01000045.1| GENE 29 32259 - 33710 1894 483 aa, chain - ## HITS:1 COG:AGl1094gl KEGG:ns NR:ns ## COG: AGl1094gl COG0477 # Protein_GI_number: 15890666 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 28 473 5 395 409 121 26.0 3e-27 MSNNSSNSNSGAILAGIKEAGHKVFGGYAELLRIPHTARYSIGSVIACMPFPMVGMTITI SVQHYYGNYSLAGMLTAIQAIALAVATPLLGKLTDKFGQRQVSIPTIIVWIVAAIALVTA ITNRAPEWVLYCLTPFLAAIPPWGAMSRARWTKILKGDRERTNRALSLCGVLDECMWVIG NPLASTLAVISGLLAFSFTGMCVVIGALMFLTELTTEPPSQTALARAEGISRKEYREREA AKAEALKAETAAEETRRRLEREGVTDEATINAAIKQAVADARSGKKASIWGPGLIAVCVT WFGLGAFQSATGISIIAFATEANMKQYTGFVFACFSFSSLMGALVYGAKNWSIALWKRFY FCLAVVNIGISTFLFAKHLWVIMIIYLIIGVCQAPTWINGNQLMLHLVPPSRLTEGMAWM GAMNSIGSSAGSAIAGQFIDRMGSHGGFMVVTTLALVSLAIALIGFKQIKGSTEQPTLTE VSV >gi|316915171|gb|ADCN01000045.1| GENE 30 33952 - 34611 748 219 aa, chain + ## HITS:1 COG:Rv0525 KEGG:ns NR:ns ## COG: Rv0525 COG0406 # Protein_GI_number: 15607665 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Mycobacterium tuberculosis H37Rv # 4 216 5 201 202 124 39.0 2e-28 MSATTIHFVRHGKVYNPDHLLYERLPDFHLSDLGRRMAQATATYLAKNPQTNTIAAVYSS PLDRTRETAGAILDALNPVREARGEAPLTLTTDERVIEAGNEFRGKRIGHGEGALWKNGN WKLVTNLYKPSWGESYQHIAARMDDFAREKVAQHPGEQIVVVSHESPIFSYRHYLETGHP EHWMFLRHTALASVTSVTYDNETGRVMSITYVDPAANVK >gi|316915171|gb|ADCN01000045.1| GENE 31 34625 - 34942 117 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MASVSGHRLISAEPASAASVTAGNAVTCAIASRLSSMVIYAPLRPPLDCSASLGSPQSPT VTAQQQLWTGHARASIARLSARLRLQTVHWTVCFAAQPQRGEPMS >gi|316915171|gb|ADCN01000045.1| GENE 32 34827 - 35121 276 98 aa, chain + ## HITS:1 COG:no KEGG:BL0473 NR:ns ## KEGG: BL0473 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 90 1 90 319 160 94.0 1e-38 MTIELNREAIAQVTALPAVTEAAEAGSALISLWPLTEAMQMDNDAKYAENLQVRVTHAFA RILTGQDVTMPDAEFVYEGADEIPGRPQSISCSCPSRR Prediction of potential genes in microbial genomes Time: Fri May 13 13:29:14 2011 Seq name: gi|316915140|gb|ADCN01000046.1| Bifidobacterium sp. 12_1_47BFAA cont1.46, whole genome shotgun sequence Length of sequence - 33495 bp Number of predicted genes - 32, with homology - 30 Number of transcription units - 18, operones - 6 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 449 175 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Term 630 - 679 12.2 + Prom 601 - 660 3.9 2 2 Tu 1 . + CDS 696 - 1757 928 ## COG3177 Uncharacterized conserved protein - Term 1706 - 1737 3.9 3 3 Op 1 . - CDS 1798 - 2439 671 ## COG3467 Predicted flavin-nucleotide-binding protein 4 3 Op 2 . - CDS 2393 - 3409 1140 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - Term 3761 - 3824 20.1 5 4 Op 1 3/0.000 - CDS 4005 - 6578 2839 ## COG2898 Uncharacterized conserved protein 6 4 Op 2 . - CDS 6575 - 7930 1624 ## COG0627 Predicted esterase 7 5 Tu 1 . - CDS 8205 - 8507 95 ## gi|53690288|ref|ZP_00346168.1| hypothetical protein Blon03001894 - Prom 8722 - 8781 2.6 8 6 Tu 1 . + CDS 8431 - 8646 186 ## BL0574 hypothetical protein + Term 8652 - 8683 2.0 9 7 Tu 1 . - CDS 8814 - 9770 809 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 9870 - 9921 16.3 10 8 Op 1 . - CDS 10097 - 10600 725 ## COG0071 Molecular chaperone (small heat shock protein) - Term 10617 - 10654 -0.7 11 8 Op 2 . - CDS 10723 - 10926 99 ## 12 8 Op 3 . - CDS 10981 - 11835 1353 ## COG3853 Uncharacterized protein involved in tellurite resistance 13 9 Tu 1 . + CDS 12275 - 12745 -196 ## + Term 12934 - 12986 4.9 14 10 Op 1 . - CDS 12757 - 13146 358 ## BL0579 hypothetical protein 15 10 Op 2 . - CDS 13156 - 13476 383 ## BLJ_0061 hypothetical protein 16 10 Op 3 . - CDS 13476 - 14627 1471 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 17 10 Op 4 . - CDS 14707 - 15798 1552 ## COG2267 Lysophospholipase 18 11 Tu 1 . + CDS 15917 - 18361 3026 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases + Prom 18467 - 18526 3.6 19 12 Op 1 . + CDS 18546 - 19247 1037 ## BLJ_0057 FHA domain containing protein 20 12 Op 2 7/0.000 + CDS 19277 - 19807 526 ## COG1716 FOG: FHA domain 21 12 Op 3 4/0.000 + CDS 19812 - 21506 1716 ## COG0631 Serine/threonine protein phosphatase 22 12 Op 4 19/0.000 + CDS 21503 - 23164 2043 ## COG0772 Bacterial cell division membrane protein 23 12 Op 5 4/0.000 + CDS 23161 - 24627 1794 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 24 12 Op 6 7/0.000 + CDS 24624 - 25574 873 ## COG0515 Serine/threonine protein kinase 25 12 Op 7 . + CDS 25571 - 27643 2484 ## COG0515 Serine/threonine protein kinase + Term 27728 - 27765 3.0 - Term 27757 - 27797 -0.6 26 13 Tu 1 . - CDS 27867 - 28511 861 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 27 14 Op 1 . - CDS 28562 - 29800 1150 ## COG3764 Sortase (surface protein transpeptidase) 28 14 Op 2 . - CDS 29797 - 30648 779 ## COG3879 Uncharacterized protein conserved in bacteria + Prom 30602 - 30661 3.0 29 15 Tu 1 . + CDS 30681 - 31157 743 ## BLD_1387 putative septation inhibitor protein + Term 31179 - 31221 0.4 - Term 31721 - 31773 16.3 30 16 Tu 1 . - CDS 31845 - 32597 693 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) - Prom 32749 - 32808 1.7 + Prom 32680 - 32739 2.0 31 17 Tu 1 . + CDS 32795 - 33013 501 ## BLA_0067 hypothetical protein 32 18 Tu 1 . - CDS 33104 - 33493 423 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|316915140|gb|ADCN01000046.1| GENE 1 6 - 449 175 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 72 40 5e-12 MERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGM LTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLLGYKT PNEVWDEEMAKLQSKQADPKPAVALTS >gi|316915140|gb|ADCN01000046.1| GENE 2 696 - 1757 928 353 aa, chain + ## HITS:1 COG:ECs4465 KEGG:ns NR:ns ## COG: ECs4465 COG3177 # Protein_GI_number: 15833719 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 51 283 122 346 431 87 29.0 5e-17 MKHFDYITAAKGLLTPRTTTLLSAIHEAKGRQSVQAAIRPDLLNTLIAVARIQSTNASNR IEGISTSDKRLNALVAGKTTPHNRAEEEITGYRDVLATIHESHDYIPPTPNTILQLHRDL FRYTGLAFGGHFKDSDNAIIERDATGKQIIRFTPPNALITPELIERACAAYTEAIQDGHI DPLLATAMFTFDFTCIHPFNDGNGRMSRLLTLLLLYRNGYQVGKYISIEHLIERTKDTYY EALAASTYGWNDNVNDYAPFVNYLLGVILTACKEFDERIGEVSDWGSNRKPTKEQRIGNL FERTLSPLSKADILQQLPDISASTVERTLKTLLDNGTITKLGAGRGTRYVKNR >gi|316915140|gb|ADCN01000046.1| GENE 3 1798 - 2439 671 213 aa, chain - ## HITS:1 COG:FN0030 KEGG:ns NR:ns ## COG: FN0030 COG3467 # Protein_GI_number: 19703382 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Fusobacterium nucleatum # 28 188 1 155 158 98 33.0 8e-21 MSMENIAGARKPAKREDEHTVAGEHRMMRRADREVTDPERIAAIIAACDIVEVAYADAEG LTIVPLNFGFDYEYDEATGKLTLWFHSAPRGRKLDAIRAAAGGRLPVAFTMQTDCEVVAG RTTCNWGETFKSIVGNGTASLVEDLDECRHGLQTLMAQQAHMPNVEFTDAQVRSVTVWKI ESDYFTTKVRTKPVPTHMHQHPAVPRAGVIGAR >gi|316915140|gb|ADCN01000046.1| GENE 4 2393 - 3409 1140 338 aa, chain - ## HITS:1 COG:SPy1055 KEGG:ns NR:ns ## COG: SPy1055 COG0229 # Protein_GI_number: 15675047 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Streptococcus pyogenes M1 GAS # 181 319 9 143 145 172 58.0 9e-43 MSERNEHNDGNTQTAYFAGGCFWGLERYFQNVDGVTDTTVGYAQSTVESPAYEQVCAGGT DAAETVKVEFNPAQVSLRTLTLLFLEVIDPFSVDQQGEDRGRQYRTGMFYTDETQRAVYV AALEQLVDRQPQRPAVLVEPLRNFYPAEAHHQDYLVNNPGGYCHVPIAAIANVKRRQKYV ERIWDLTLEQFAVTQNAATERPFVNEYDEEFEPGIYVDIVSGEPLFSSRDKFDSGCGWPA FSRPIAGDLLTEHEDHRIPGRDRIEVRTSDTQIHLGHVFTDGPADRGGLRYCMNSAALRF VPRSRMAEEGYGDWISVVDGMIRHEHGEYRGRSQARQA >gi|316915140|gb|ADCN01000046.1| GENE 5 4005 - 6578 2839 857 aa, chain - ## HITS:1 COG:Cgl0941 KEGG:ns NR:ns ## COG: Cgl0941 COG2898 # Protein_GI_number: 19552191 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 149 840 115 784 804 306 33.0 1e-82 MSEESRKHNSHAAESWRELAGDVRQWADGHRLAITATVALVVLNLVVWLVVAMAGFAFPL RLDTSMAEFDFGKLFCTLFLARGVIQLILDAALWLVMLSIAEPWLGRARTVGTALACALG GVIVGLTLCAAAGWLFQDSQFVSRMQFALSPLVLPVGALMAASAFCSHLLRRRIRLIGYV AILVALLYSGNPGDYCILAAALIGHAAGRVMAGPPAHAETGWHWLRSTSFEARRMFAAIA VVLALGPIIAITSHNHAGPLSTVGLLMSPVSVDDGTLARCLAGATHSGCFLQFDLLRASM PGAVLRSLLPTAVTLVLAWGLYRGRRFAAMCAVAINLFTAGVAIAYYLIVPLSFAPDGMT SLLQHGAITACVANALPPLFFAVALTAALKHFPIRVGWRRLIGGVGAIVLVLLACAAVYL MYGIAQPDEFSPRATASSLLAELPGRFLPIGFLSHMKLSFVPRTPMASIVYQGVGLVFWI VVLVVVIRWMSDVSESNERAQARAERLVETGGESMSFMTTWEGNSYWLSPTGKSAVAYRV LNGIALTCTGPFGEPSEWMDDLTGFTQYCVERSLSPVFYSVHREQRDALLEAGWSSIEVG SEMVVDPRGWKTTGKKWQDVRTAINKAKRDGVTDVQSTFLEASLDVREQIEDISEEWAQL KALPEMKFTLGGVEELRDPRVRLLYAIDADGRVLGVTSWLPTWRDGRIVGWTLDFMRHRT DSPNGIMEFLIARMAERLRDEGLADPEHAVEFMSLSAAPLAGMNPERDNAREGGVAAGEG TQVLQHALQIVADWMEPAYGFHSLFNFKRKFQPAEAPVYVCYPDPAALPQIGLAVVRAYV PSVTPAEVAGMLSTLRS >gi|316915140|gb|ADCN01000046.1| GENE 6 6575 - 7930 1624 451 aa, chain - ## HITS:1 COG:Cgl0942 KEGG:ns NR:ns ## COG: Cgl0942 COG0627 # Protein_GI_number: 19552192 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Corynebacterium glutamicum # 3 434 7 424 426 163 28.0 6e-40 MELSLVRGIVPRTVFGLTAIAAIILVIGLALSKSNKRGRLHPLIVSLIAAVLAGAAGMLV AWLVSDVFMVFGVSLGWPVIFTIAGGIAGVGFVIAAAVTMRGARRVLAIVLVPLVLLSTA LGVDSIYGEYQTIGTLVGYTPYASLGSIEVHKAAMSVSDWHSKARKGSLPSMPSQGKVLT VDIPNTESNFTARKAMIYLPPAALSDRPPALPVMELLAGQPGSPSRLIDAGNIAATMNAY AAKHDGLAPIVLVPDQNGEATHNSLCADTTQGNAETYLTTDVVNWAKKMLPVAKSARMWA MGGFSQGGTCTTQLVPRHPDIYGAMLPVDGELKPTNGSVAKMVQEYFAGDRKAYDEQVPV NAIAATGTPEQALFTGAGERDKESISNMRTIADAARKAGMEVTELIVPGTGHDWHAVQAV WRPGLDWFGERTGLGEMTKSLKEYPQVEVLQ >gi|316915140|gb|ADCN01000046.1| GENE 7 8205 - 8507 95 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|53690288|ref|ZP_00346168.1| ## NR: gi|53690288|ref|ZP_00346168.1| hypothetical protein Blon03001894 [Bifidobacterium longum DJO10A] # 32 100 748 816 816 72 100.0 7e-12 MITKRAANPQFTKNPSPSTMATTTTTVTIIVNSARRGLVSLAQEVLAAGFAVELAAAFVA VVPSAVTVVGLAAALVAGPVGASDTLSAALPVAAGRCSFA >gi|316915140|gb|ADCN01000046.1| GENE 8 8431 - 8646 186 71 aa, chain + ## HITS:1 COG:no KEGG:BL0574 NR:ns ## KEGG: BL0574 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 10 71 89 150 150 122 100.0 4e-27 MVVVVAIVLGLGFFVNWGLAALLVIIMIPGAISLAVLAKHPESTGGRSMFGISDPNTLLD PIRRPSERRGE >gi|316915140|gb|ADCN01000046.1| GENE 9 8814 - 9770 809 318 aa, chain - ## HITS:1 COG:RSc2109 KEGG:ns NR:ns ## COG: RSc2109 COG0697 # Protein_GI_number: 17546828 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Ralstonia solanacearum # 27 315 6 291 316 196 43.0 5e-50 MANGAQNASGTPAPAASHSGGHVVSARATTIGLMAILLWSFMAGTVRIVSENFGATLGSA LIYTVGGILLLMFRRPAPIREFPKKYLIIGGLLFVFYESSISLSLGLASTDASSVEVSLV NYLWPTMMVLLSAGVSHRKHAVVKVLPGAIVATAGVVLAVGGNSGLDWHAAVQHIAANPL PYALAFVGALAWSVYAVFTPAMSHGVDGTSLFFPCVAVALWIIHFASWQGWPAEPPSLVA WLFVLIAAAAIGGGYACWGYGILHGSMERLAIASYATPVLSTGASAVLLGLALSLPFWCG ALLVAVGSVLNYLVSARK >gi|316915140|gb|ADCN01000046.1| GENE 10 10097 - 10600 725 167 aa, chain - ## HITS:1 COG:CAC3714 KEGG:ns NR:ns ## COG: CAC3714 COG0071 # Protein_GI_number: 15896945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Clostridium acetobutylicum # 44 150 48 137 151 65 37.0 4e-11 MAMFPALMNDTMFSDLFDDPFFEGWRNTDNTMSAVMPANMMTTDVRETDKGYDVDIDMPG FKKEDINLELNNGYLTVSASRCSEHEDKAPAAEDEASDSKCACASDSGKWLRRERYMGSC SRSFYVGEDVKESDIHASYRNGTLCIQVPKMQAQPQVESKHQIAIEG >gi|316915140|gb|ADCN01000046.1| GENE 11 10723 - 10926 99 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPLAEVYEYAYWCAYICSRWRELAAVRLAEGGHGARLGRLYRQPFPPQFLCGHNPGMIA ALGNWMK >gi|316915140|gb|ADCN01000046.1| GENE 12 10981 - 11835 1353 284 aa, chain - ## HITS:1 COG:BS_yaaN KEGG:ns NR:ns ## COG: BS_yaaN COG3853 # Protein_GI_number: 16077094 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Bacillus subtilis # 53 278 155 381 386 140 36.0 3e-33 MQKLAWERHGFRAANFAGTDSISRFGVAGTLDQIPAVSELPNNDAMQHLITTLQSAQAKL VADISMYDTMYTQNAQQYRELKMTVLAGKKALADFNANQLPALEAEAAASGDAMQAQVLK NFKSKLDRFAKRLDDLDRISVVTLQTAPQIKIIQNADQTIVDKIDTTISTTIPVWKSQMV IALGLSNQRKVLDLQNKADDVTNKLLARNAAALHKGAVDAEKANQRSVVEIDTLEKINAE LIATLKETVQIQKEGEANREAAQVKMRQIESDLKNALLENAQQM >gi|316915140|gb|ADCN01000046.1| GENE 13 12275 - 12745 -196 156 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLATIASTALAISMWYAPESSLVTSPPFTSPSATALCVYSTIGELKTMSLWGGLDAFRIA VFDGRARGGEQVTHAFPVRIHHGRRSGLAIVDGNALLGGERLELGVIEQADFLAVQVAGD AHLFGRFGRCWLRLPPHQRAADHAHYRKQGDQSDDF >gi|316915140|gb|ADCN01000046.1| GENE 14 12757 - 13146 358 129 aa, chain - ## HITS:1 COG:no KEGG:BL0579 NR:ns ## KEGG: BL0579 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 129 111 239 239 212 99.0 3e-54 MTRDTSAYPTLRHYITVYGEQTEKLLRSYVDVESSGARDQIATARIETIEALQVLEQTAA GELSRAVSAKTLGITADSDAIQRLARMDGYDDVAPSPVPSSAADEGRHAPSQTPSGGPAH QSDQKTDAQ >gi|316915140|gb|ADCN01000046.1| GENE 15 13156 - 13476 383 106 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0061 NR:ns ## KEGG: BLJ_0061 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 106 1 106 235 157 98.0 8e-38 MLQVICGFVVGLLLAGLGFGLVGGGVPGLIVAVVLAALGYIAASTLTEPERRIGKMLVSA LPNGQKTADTIDAANARLNSIAMLTKQVRDPAVKAEANDFIAATKD >gi|316915140|gb|ADCN01000046.1| GENE 16 13476 - 14627 1471 383 aa, chain - ## HITS:1 COG:Cgl1370 KEGG:ns NR:ns ## COG: Cgl1370 COG2304 # Protein_GI_number: 19552620 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Corynebacterium glutamicum # 184 382 320 524 525 77 29.0 5e-14 MGIMSSLRRRAAAVAAAACAGVLALTGCAAFNNSDDGTADGNGTSATTQTFQPSGGKPTA TLSIASGSENKEVAVAIQKAADQSNVAVTMHYMGSLEIMNALKAGGQDHDAVWPASSMWI SMGDTKHIVKDAASTSTTPIVFGIAKSKAVKLGWADDTGAAKPVSTADILAAVSDGKLTF SMTSATVIDSALNVYQTALRKPSWTIWVVDYSGSMSGEGKNGVVKGLNAALDPDQAKKSY IEPASGDVNILIPFETEAHRPVKATGTSTSDLLHEADATDASGGTDIYEGLLSALDELPS ESEASQYTTAIVLMTDGRSNSDHQDEFESSYKSRGRDLPIFSIMFGDADPSQLKSLATLS NAKVFDGRSGDLAAVFRQAKGFN >gi|316915140|gb|ADCN01000046.1| GENE 17 14707 - 15798 1552 363 aa, chain - ## HITS:1 COG:CAC2246 KEGG:ns NR:ns ## COG: CAC2246 COG2267 # Protein_GI_number: 15895514 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Clostridium acetobutylicum # 70 355 79 361 363 159 32.0 7e-39 MQVTMIDENKYAETMTDVVLPALEQCCEEGWFDPSAAERSAGIEPLSGIMDTGGRSGQLH YLCYDSAKFDAIREQGATATFRGAIVISHGFTEFAEKYDELVWYFLLAGYSVCVLEHRGH GKSARDVDNRCMVWIDDWQRYVADLAGFAETIGQQYAAGMPLNLFCHSMGGGIGAAVLER YPTLFDKAVLSAPMIAPATGMPLGVARVLVGALCGLGFGKKRVFGQSGFTPEFSMEGNEG ASEARERWYFKLRCENSEYQTYCAAFEWVRQALKLNRAILNPSACAEVETPVLLFQSGRD IWVLNKPQNHFVQLVKDGGGEANIVRFPESRHEIFSMPNSTYKPYLEKILGFYDDPMIAC AAY >gi|316915140|gb|ADCN01000046.1| GENE 18 15917 - 18361 3026 814 aa, chain + ## HITS:1 COG:CC2154 KEGG:ns NR:ns ## COG: CC2154 COG1506 # Protein_GI_number: 16126393 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 37 773 48 694 738 156 26.0 1e-37 MSETNDVNDAIKHFPRLRARTLRFGCGAPRSAQTVGDGSRALFLRSDGPEDLVTALWLSW FDESGEHHETKLADPRELLGATADSEDVPAEEKARRERAREGGTGIVGYSADDDGNRIVF TINGRLFLTDIDWNDETGAPEPHTRELAGEWLDEDPAMYTPVLNPRIAPDGEHVLYTTGS YLMLVDIGGELGDRITAVYGVSVEDEDGNPAENTWKIGLAEFVAGEEMDRYDGFWWAPDS QHVLFESFDTADEPTWHISDPADPEKPDAGRRYPRALTRNADVYLTVITLAFDENDRYAG ITGNADVDWDREAYEYVAAVNWRRGHDPLVLVQNRRQTRDQVLEVAVAADGAALGATRVL EEHANEQWIDLVHGTPAYTPDGRLVCSLNDMATDTNRLTMDGRPFTPAGWNVRTVLAVTD EDVLAVVQRAPEIAPEVPDAWADAAATESVFGDHDARSFDVVSIDYNGTITPVTTDPGQW TASRGERGIVVSGRDMRSARAQMRHILGEQSATIASTAAEPGFTPNVTFTRLGEHQLYTA IIAPSPESPYAHAEKLPVLMKPYGGPGFQQVIASQSFYWEGQWWADQGFLVVTADGRGTT GRGPAWDREIFEDMKDVTLADQVEAVNALPEAVARLNADVESRAAQPAAGDQADAENHPP ALRATSRQREAIPMPDLDKVCMIGWSYGGFLSALAVLDAPNVFKAACAGAPPTDWTLYDT HYTERYLGLDPDVYYRNGIVQDAPKLERPLMLIHGFADDNVTIAHSLRLSQALMAAGRPH TFLPLTGITHMTNDETVAENLLTLQRDFLRDALA >gi|316915140|gb|ADCN01000046.1| GENE 19 18546 - 19247 1037 233 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0057 NR:ns ## KEGG: BLJ_0057 # Name: not_defined # Def: FHA domain containing protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 233 1 233 233 452 100.0 1e-126 MSVLDRFEKSVEGAVNGVFAKFGSKDLQPVDLSSALEREIDAEAMPVGRDRTVAPNEYRF KLSTPDFDRIEAWGSETLANELADNLTEYAKSQHYAFVGPVIVIFEEDLDLSKGNFNLTS ESVQGNAVPVTTDAQTEDSPVLEVNGNQYLLTKDKTVIGRGSGCDIVIDDPGISRKHLEI DITDNGVIARDLGSTNGTYVEGHQVPAATLLDGNTITIGRTRILYWASAQAQE >gi|316915140|gb|ADCN01000046.1| GENE 20 19277 - 19807 526 176 aa, chain + ## HITS:1 COG:Cgl0046 KEGG:ns NR:ns ## COG: Cgl0046 COG1716 # Protein_GI_number: 19551296 # Func_class: T Signal transduction mechanisms # Function: FOG: FHA domain # Organism: Corynebacterium glutamicum # 1 175 1 152 154 93 33.0 2e-19 MTELTFALLKYGFLILLWIFIWLAVRSLRKDIETFSPRPSRARRRREREAHKAKAETPQA AAPRPHRQPSASASSAASAQPTLLVIIDGPLAGSSVPLAEADITLGRAASNTVVLDDEFV SSHHARVYRDTRSGQWAIEDLNSTNGTVVNQQRISRPTILPARIPVRIGATTFELR >gi|316915140|gb|ADCN01000046.1| GENE 21 19812 - 21506 1716 564 aa, chain + ## HITS:1 COG:ML0020_1 KEGG:ns NR:ns ## COG: ML0020_1 COG0631 # Protein_GI_number: 15826883 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Mycobacterium leprae # 10 247 3 234 237 199 47.0 9e-51 MPKSAASQPLFLYSTTVSDVGTVRANNQDSSFAGEHLIAMCDGMGGHAGGDTASSIAIRS LAHIEQDDTGGNVETISRMMETSVMAAHDAIVGKAKRERKLAGMGTTVTAVALVAGYWVI AHIGDSRAYLLRDGHLSRITCDHSYVQHLINTGRITPSEAKNHPQRNVVMRVLGDFDIDP RPDISIRRAHPADRWLLCSDGLCGVLEDSTIEETMTTLSDQGECAQRLVQMALRAGSTDN VTAVIADATLALDADAFDLPHQTPLVGGAASRNLEPIADIVNEPVATAPALREDDSPAQR AAALIQPASAHEAETAQTTAKPSSTRVVQPSTVREETGERANPDTGEIPVVQKPDGRLSA DPNDPDVAKAIRDEQVEQKKATRTKKRRNKLAVIITCILAVLALAGAGWGAYTWSQTHYY VGDSNGTVAIYRGVPTNLFGLELSHEVQTTNIATADLPQTWRDQLSQGITVGSLDEAQSH VGIIRTEMRKLAKQQEADAAKKAEASNSPDSSKDSSQSDSKDSTEDSSSQSGSSSDKSGS SSSSDSSDKSGIGAADNAATGDSQ >gi|316915140|gb|ADCN01000046.1| GENE 22 21503 - 23164 2043 553 aa, chain + ## HITS:1 COG:MT0020 KEGG:ns NR:ns ## COG: MT0020 COG0772 # Protein_GI_number: 15839391 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Mycobacterium tuberculosis CDC1551 # 7 432 19 447 469 309 43.0 1e-83 MIVTRLRQISLLLIAMAISALAFIQMFQRTAGEFPMQYAGMLALAVVLFLVLWGLIVRFQ PYASQSILPCVLLLTATGVTMIARIDQSEGWAVAQRQLIWLCIAIVLSALLIIFLKDYRV LRRFSYVSMVVGLVLLLAPMLPFVGQEVNGARIWIRIPGLGQFQPGEFAKLFLAFFFAAY LFDHRDQLAVGGKKMLGLQLPRIKDLGPIIVVWIASMGVLIMQHDLGTSLMFFAMFVAML YTATGRKSWIIIGLIAFAAGAVLAAGMFSHVGQRVDAWLHPFSNEQYNKTPGGSWQLVTG IFGLASGGMLGTGLGQGHPSLVTFANSDFIYASLGEELGLMGVLAILMLYLLIIASGFIT AMKIKDGFGKLLASGLVFTMAFQVFTVVGGITLVIPLTGLTLPYMAAGGSSLIANYILAT LLIIISNSANAPEPELTSDTFQYEALAVLRNKELEARARATEPIVQPRSASATASQSESE SFDDPIVDITKHAPDTLEAPEVPAIVTSAGSAAAPIAEPIVDATTPAYAGADEPYTPTGT IPPLPPVNGGTRV >gi|316915140|gb|ADCN01000046.1| GENE 23 23161 - 24627 1794 488 aa, chain + ## HITS:1 COG:ML0018 KEGG:ns NR:ns ## COG: ML0018 COG0768 # Protein_GI_number: 15826881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Mycobacterium leprae # 1 487 1 489 492 292 39.0 1e-78 MNKYLRQLFTAVVALFVILGLSSTIIMAVRANALNNDPRNARSLYHQLGAYRGAILASDG TVMAKSEPVNDAFKYLRTYSNGPLYAPVTGFFSINQTADRGLEASRSMLLNGEADSLIWQ RAKAMLTGTTNQGASIETSIDPKLQQVAYDQLGTRDGAAVAIEVNTGRILAMVSTPSYDP NKLATHDTKAASQAYNELSAGQNSPLINRATSQLYPPGSTFKTIVASAALETGDYQTDTK IPAGASYTLPGTATQLPNDEAQADGVNGQISLQEAVAWSSNTAFAQLGVKLGASKVSDMA TKLGFGSTITIDGTESTGTPMTATASTFPSDPTDDKLALASIGQGDTTATPLQMAMVAQA IANNGKLMQPTLVDRVRAADLTVLSQTKPQTMANAFSKDSADKLTTMMESVVSEANPQLA IDGIKVAAKTGTAQIGTDNSAIDGWVIGFAPADDPQIAVAVLVHNTDVYGSLAAGPIMRA MMQEALQQ >gi|316915140|gb|ADCN01000046.1| GENE 24 24624 - 25574 873 316 aa, chain + ## HITS:1 COG:Cgl0042 KEGG:ns NR:ns ## COG: Cgl0042 COG0515 # Protein_GI_number: 19551292 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Corynebacterium glutamicum # 7 313 14 331 469 204 39.0 1e-52 MKLIEGQLIHRRYRLDSRLAQGGMGEVWKGYDIQLGREVAIKALRSDMTNAEAKLRRLRA EAHNSANLAHPNIAALFEYYEHDGIGFLIMEYVPSKSLADLFHSKGAMDPIELLPILIQT ARGLFVAHSHGVIHRDVKPANIMVSDTGEVKITDFGVSYSTGQGQITQDGMVVGTAQYIS PEQAQGQQATPQSDIYSLGVVAYEGLAGHRPFTGTTPVDIAAAHVNNPVPPLPDSVDVQL REFVMSMLAKDPLDRPKDALVVSRTLARIERRLLDQQTEMADTAMATSGNRLPRRVTSTP RIVLEAPASRLGGNKQ >gi|316915140|gb|ADCN01000046.1| GENE 25 25571 - 27643 2484 690 aa, chain + ## HITS:1 COG:Rv0014c_1 KEGG:ns NR:ns ## COG: Rv0014c_1 COG0515 # Protein_GI_number: 15607156 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Mycobacterium tuberculosis H37Rv # 13 473 10 428 428 301 41.0 3e-81 MSTSMPTALAGGRYQLGQLIGRGGMAEVHVALDTRLGRTVAVKIMRADLANDDIFLARFR REAHAVAQMNNPNIVNIYDSGEELVSSESGDAERLPYIVMEYVKGQTLRDIIKVNGALSQ RDCEQVMLGVLNALDYSHRMGIIHRDIKPGNIMISEQGVVKVMDFGIARALDDSAATMTQ SQGVVGTAQYLSPEQARGETVDMRSDLYSAGCVLYEMLTGRPPFTGDSAVAIAYQHVSEV ATPPSAVVPGLPKMWDSICAKAMAKDRQNRYATASEFKTDILTYMNGGVPVAAAFNPLTD LSNMKARKEAERDLPTTPVEPHQQPTQAFNPVTGQFEQIPPANGANSAALQSRAQQRAAA AKAKKRKKIIIGSVIAAIVAVLVIVGIVFAMNGSGNKSSEDTVTIPEVCNASTSKDSIEL KLKASGLKMTEKQDTDSTEPEGTCTKMSPDAGSKVAKGSAVKVWFSAGPQSTQVPDVKER SQEEARSILESAGFKVNAAVKTEDSADIAKDMVTKTDPAAGQSVPKGTTITIYVSSGMTT VPSNLVGQSKDSVLQQYEGKFSFTVEQESSDTVEAGLITRVSPDSGSSIAQGGFITIWVS TGKEKVAVPNITAGTDYVTAELMLKAVGLKAQANGPTGSTAVVVSINPGAGSQVDAGSTV TITTKAGSTGGGTGTGDGGNGTGNGGGTGE >gi|316915140|gb|ADCN01000046.1| GENE 26 27867 - 28511 861 214 aa, chain - ## HITS:1 COG:ML0015 KEGG:ns NR:ns ## COG: ML0015 COG0512 # Protein_GI_number: 15826878 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Mycobacterium leprae # 7 197 3 193 232 199 50.0 4e-51 MTDSAHILVVDNYDSFVYTIVGYLQTLGATVDVVRNDAIDPAAPGVLDGYDGVLISPGPG APAESGASEDMIRLCAASGVPMFGVCLGLQALAEVYGCTVDHAPTIMHGKTSLVEHIDDE IFEGVANPMTATRYHSLAVEPDSVPDTLVVTAWTQGDHIIQGVRVKGKPMYAVQFHPESV MTQDGYRLLANWLKVCGQDNAVAKSAGLQPKVTK >gi|316915140|gb|ADCN01000046.1| GENE 27 28562 - 29800 1150 412 aa, chain - ## HITS:1 COG:Cgl2874 KEGG:ns NR:ns ## COG: Cgl2874 COG3764 # Protein_GI_number: 19554124 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Corynebacterium glutamicum # 67 263 6 226 255 102 27.0 1e-21 MRHGRHNSGVPAPIDLASVSDVQPFPEDDAARMAADPANASRARSRRAAVRGASSPQRSP VWQALGICAELLITAAVICALYIVWQMWWTGVEAERAQNETTQSVDWSDPSNNGGTVTIA KAQEGDAPVQPKDAKYGDLIAQIYIPRFGSQWHRNIVEGTTLEQLNRHGLGHYDTTQMPG QVGNFAVAGHRNGYGQPLGDVDKLQEGDSIIVRTKDYWYVYHYTRYEIVLPTDVHVIAPN PEDSTANPTKRMITLTTCEPKYSTPTHRWISYGELAYWAKVSDGVPKELATTDSSGAVMF STTETPSIASRIGSLDKVVFGALVVWLVLFIAAAVAWRWPVLREIRAGERRRPDASIYGG LLRLQPGVAPIRWLLLALLLFAAAAALFQWGFPWAAANIPFLQQMSNFVAAS >gi|316915140|gb|ADCN01000046.1| GENE 28 29797 - 30648 779 283 aa, chain - ## HITS:1 COG:MT0015 KEGG:ns NR:ns ## COG: MT0015 COG3879 # Protein_GI_number: 15839386 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mycobacterium tuberculosis CDC1551 # 66 254 61 241 262 111 38.0 1e-24 MATLESGDQSRQEDRKFMARHVGKHGARHSLWGGVAVFVVIALTGFLLSTNVRVNRTVAA TNDTADLVEQGVDEANQLQQDVSDLTKQVANLTDALKADGTDGTDSTQNQGKDSSNVDSS LMLPALSGSGVTVTLDDSPLWENAVNNNGTTANINDYVIHQQDVESVVNALWAGGADALM IMDQRVLFNSAVICSGNVLSLHGKKYSPPFTISAIGDPQRLRAALNDSEAITILKQYVTA FGIGYKVENAEDLQFPATAALLQQLKYATVDTSKTTDEEQTQQ >gi|316915140|gb|ADCN01000046.1| GENE 29 30681 - 31157 743 158 aa, chain + ## HITS:1 COG:no KEGG:BLD_1387 NR:ns ## KEGG: BLD_1387 # Name: not_defined # Def: putative septation inhibitor protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 158 1 158 158 302 100.0 2e-81 MLMADEELHETDSNNQKDWQSETSSSTVADETASKDTEQNAENASAEEGAAYGVNMEQVQ AVLNATADKATLTPQMQRMMNRQAENTKRVEETIKGTKSNPRWFVPLFCAFMIIGLIWCV VYYLSPSGSWPIPNIGAWNLGIGFALIMIGFLMTMGWR >gi|316915140|gb|ADCN01000046.1| GENE 30 31845 - 32597 693 250 aa, chain - ## HITS:1 COG:MT0119 KEGG:ns NR:ns ## COG: MT0119 COG0705 # Protein_GI_number: 15839491 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Mycobacterium tuberculosis CDC1551 # 18 197 72 235 284 97 36.0 3e-20 MHIPTQREIRYQWERGGPVMTWALIVACVAVWLLEVLLGFIAPGLRAWLMYLGMAAPVRL VAEPWTLITSMFLHAPNSLLHILFNMIALYSVGPVLERMIGHWRFLGLYVISGLGGSLGL MVWAAVAPGGIGWQMAAYGASGALFGLFASLLVVYRRIGADIRSMLIWMAVNFALPFVVG GVAWQAHVGGFVVGGILTWLLVGGVPAWRGKSLKWRMQVYGWAMVVLVIALILLCNMANP YGWMSFGSLH >gi|316915140|gb|ADCN01000046.1| GENE 31 32795 - 33013 501 72 aa, chain + ## HITS:1 COG:no KEGG:BLA_0067 NR:ns ## KEGG: BLA_0067 # Name: not_defined # Def: hypothetical protein # Organism: B.animalis_lactis # Pathway: not_defined # 1 62 6 69 80 100 85.0 2e-20 MENKSSNGWKFFALLFGGLLAALVGLYIYKQQNPDYDPWEEPWENSSSPVDLGLNKAEDE ADDEAKAAPAEA >gi|316915140|gb|ADCN01000046.1| GENE 32 33104 - 33493 423 129 aa, chain - ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 1 127 90 215 216 113 45.0 7e-26 VAWDVSRHPDLAQQQRLLAMLEEKLPEGADPILHSDMGWQYQHDWWRNRLGELGIRQSMS RKGNCIDNAATEQVFGHLKDEFYTGREFASYEEFKSELDAYIIHWNTRRRQIRLEGHTPE EFRNMSLTA Prediction of potential genes in microbial genomes Time: Fri May 13 13:31:24 2011 Seq name: gi|316915102|gb|ADCN01000047.1| Bifidobacterium sp. 12_1_47BFAA cont1.47, whole genome shotgun sequence Length of sequence - 27608 bp Number of predicted genes - 38, with homology - 37 Number of transcription units - 10, operones - 5 average op.length - 6.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 351 300 ## Blon_0449 integrase, catalytic region - Prom 559 - 618 2.7 2 2 Tu 1 . - CDS 757 - 2325 1609 ## COG3534 Alpha-L-arabinofuranosidase - TRNA 2650 - 2737 60.6 # Ser CGA 0 0 - Term 3011 - 3041 0.7 3 3 Op 1 7/0.000 - CDS 3135 - 3935 736 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 4 3 Op 2 . - CDS 4139 - 6319 3041 ## COG2308 Uncharacterized conserved protein 5 4 Op 1 . + CDS 6200 - 6598 193 ## BLJ_1722 hypothetical protein 6 4 Op 2 . + CDS 6595 - 7506 714 ## COG0101 Pseudouridylate synthase + Term 7529 - 7568 6.4 - Term 7510 - 7563 16.1 7 5 Op 1 50/0.000 - CDS 7588 - 8130 873 ## PROTEIN SUPPORTED gi|239621037|ref|ZP_04664068.1| 50S ribosomal protein L17 8 5 Op 2 32/0.000 - CDS 8230 - 9225 1479 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 9 5 Op 3 48/0.000 - CDS 9306 - 9704 669 ## PROTEIN SUPPORTED gi|23336306|ref|ZP_00121529.1| COG0100: Ribosomal protein S11 10 5 Op 4 . - CDS 9792 - 10202 665 ## PROTEIN SUPPORTED gi|118764947|dbj|BAF39126.1| 30S ribosomal protein S13 11 6 Op 1 . - CDS 10318 - 10431 200 ## PROTEIN SUPPORTED gi|23466153|ref|NP_696756.1| 50S ribosomal protein L36 12 6 Op 2 6/0.000 - CDS 10455 - 10673 285 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 10697 - 10756 1.7 - Term 10733 - 10791 15.6 13 7 Op 1 28/0.000 - CDS 10850 - 11410 1170 ## COG0563 Adenylate kinase and related kinases 14 7 Op 2 53/0.000 - CDS 11580 - 12917 830 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 - Prom 12972 - 13031 3.2 15 7 Op 3 . - CDS 13191 - 13643 760 ## PROTEIN SUPPORTED gi|23466149|ref|NP_696752.1| 50S ribosomal protein L15 16 7 Op 4 . - CDS 13646 - 13840 315 ## PROTEIN SUPPORTED gi|227546494|ref|ZP_03976543.1| 50S ribosomal protein L30 17 7 Op 5 56/0.000 - CDS 13837 - 14568 1208 ## PROTEIN SUPPORTED gi|189440586|ref|YP_001955667.1| 30S ribosomal protein S5 18 7 Op 6 46/0.000 - CDS 14565 - 14936 600 ## PROTEIN SUPPORTED gi|23466146|ref|NP_696749.1| 50S ribosomal protein L18 19 7 Op 7 55/0.000 - CDS 14938 - 15477 907 ## PROTEIN SUPPORTED gi|23336516|ref|ZP_00121730.1| COG0097: Ribosomal protein L6P/L9E 20 7 Op 8 50/0.000 - CDS 15495 - 15893 669 ## PROTEIN SUPPORTED gi|23466144|ref|NP_696747.1| 30S ribosomal protein S8 21 7 Op 9 50/0.000 - CDS 15983 - 16168 333 ## PROTEIN SUPPORTED gi|23336514|ref|ZP_00121728.1| COG0199: Ribosomal protein S14 22 7 Op 10 48/0.000 - CDS 16170 - 16742 977 ## PROTEIN SUPPORTED gi|23336513|ref|ZP_00121727.1| COG0094: Ribosomal protein L5 23 7 Op 11 57/0.000 - CDS 16739 - 17074 542 ## PROTEIN SUPPORTED gi|23336512|ref|ZP_00121726.1| COG0198: Ribosomal protein L24 24 7 Op 12 50/0.000 - CDS 17076 - 17444 602 ## PROTEIN SUPPORTED gi|23336511|ref|ZP_00121725.1| COG0093: Ribosomal protein L14 25 7 Op 13 50/0.000 - CDS 17539 - 17805 443 ## PROTEIN SUPPORTED gi|223466580|ref|ZP_03618116.1| hypothetical protein BIFBRE_00283 26 7 Op 14 50/0.000 - CDS 17802 - 18053 409 ## PROTEIN SUPPORTED gi|23336509|ref|ZP_00121723.1| COG0255: Ribosomal protein L29 27 7 Op 15 50/0.000 - CDS 18053 - 18472 725 ## PROTEIN SUPPORTED gi|23466137|ref|NP_696740.1| 50S ribosomal protein L16 28 7 Op 16 61/0.000 - CDS 18479 - 19282 1352 ## PROTEIN SUPPORTED gi|23336507|ref|ZP_00121721.1| COG0092: Ribosomal protein S3 29 7 Op 17 59/0.000 - CDS 19285 - 19644 582 ## PROTEIN SUPPORTED gi|23336506|ref|ZP_00121720.1| COG0091: Ribosomal protein L22 30 7 Op 18 60/0.000 - CDS 19661 - 19939 490 ## PROTEIN SUPPORTED gi|23336505|ref|ZP_00121719.1| COG0185: Ribosomal protein S19 31 7 Op 19 61/0.000 - CDS 19955 - 20785 1442 ## PROTEIN SUPPORTED gi|23336504|ref|ZP_00121718.1| COG0090: Ribosomal protein L2 32 7 Op 20 61/0.000 - CDS 20822 - 21118 488 ## PROTEIN SUPPORTED gi|23336503|ref|ZP_00121717.1| COG0089: Ribosomal protein L23 33 7 Op 21 58/0.000 - CDS 21124 - 21780 1117 ## PROTEIN SUPPORTED gi|23336502|ref|ZP_00121716.1| COG0088: Ribosomal protein L4 34 7 Op 22 40/0.000 - CDS 21787 - 22428 1093 ## PROTEIN SUPPORTED gi|23336501|ref|ZP_00121715.1| COG0087: Ribosomal protein L3 35 7 Op 23 . - CDS 22445 - 22753 525 ## PROTEIN SUPPORTED gi|23336500|ref|ZP_00121714.1| COG0051: Ribosomal protein S10 36 8 Tu 1 . + CDS 23112 - 24017 566 ## BL1576 hypothetical protein + Term 24235 - 24276 10.8 - Term 24279 - 24347 10.8 37 9 Tu 1 . - CDS 24349 - 27078 4474 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 27217 - 27276 2.3 38 10 Tu 1 . - CDS 27415 - 27537 131 ## Predicted protein(s) >gi|316915102|gb|ADCN01000047.1| GENE 1 3 - 351 300 116 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 116 1 116 358 202 93.0 2e-51 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWS >gi|316915102|gb|ADCN01000047.1| GENE 2 757 - 2325 1609 522 aa, chain - ## HITS:1 COG:SMb20924 KEGG:ns NR:ns ## COG: SMb20924 COG3534 # Protein_GI_number: 16264794 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Sinorhizobium meliloti # 16 516 3 496 506 479 46.0 1e-135 MSEHSHDNKPGELEESRLVVDNDFEVAPVNDRLFGSFVEHLGRCVYDGIYEPGHPEADED GFRKDVIELVKELGATTIRYPGGNFVSGYRWEDGVGPRDERPRRLDLAWHSTETNQFGLH EMAKWLEKTGGNELMEAVNLGTRGLEEALDLLEYANIPGGTKLSEERRANGADQPFGIKM WCLGNEMDGPWQTGHKSAEDYGTLAASVAAGMRAIDPNVELVVCGSSSHVMDTFGKWEET VLEKTFDNVNFVSCHAYYHPELQPDGTRDMKSFLASGVDMDGFINDVAAAIDATKARLKS KHDVFISFDEWNVWYLNEEPSKNPEGIGNWPVAPRLLEDVYSAADAVVFGDLMITLLKNA DRVHAASLAQLVNVIAPIMTEPGGPAWRQTTFYPFSLTAKLAKGGTVLEPKLASGTYETD KYGEVPTINSVAVRGEDGTISVFVVNRSMEAANDFAIKLPEGFALSAVEAQTLHEDDLLA KNTLEDQNRVVLHPNTTITSDADTGTVRVTLPPVSWTAVHVK >gi|316915102|gb|ADCN01000047.1| GENE 3 3135 - 3935 736 266 aa, chain - ## HITS:1 COG:AGc4251 KEGG:ns NR:ns ## COG: AGc4251 COG1305 # Protein_GI_number: 15889617 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 24 239 23 241 273 116 34.0 5e-26 MKKLVFDYEMKLSFSAPVTDHRFQLRCIPATGPRQQVIDVEVKIQPETELETTIDSFGSV VMTGFIPEPHDIFSYSVTGIAFVDNAHIHKEAYKPLYRFNSALTIPGPNVEAMIDVCRER LAALPADATPVQQAAEVMDEVYKAFVYTPGSTTIRTTAEQALAQRKGVCQDYAHVMLSVC RHVGLTARYIAGLLGGEGATHAWVEVYQDGRWVGLDPTHNRLVDDSYITIAHGRDYRDCM LDIGIFSGYNVQQTQWVNASVHEQVA >gi|316915102|gb|ADCN01000047.1| GENE 4 4139 - 6319 3041 726 aa, chain - ## HITS:1 COG:sll0335 KEGG:ns NR:ns ## COG: sll0335 COG2308 # Protein_GI_number: 16331295 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Synechocystis # 13 446 41 476 481 370 44.0 1e-102 MIESAARRLAHELVNRRETINRELSRNGVRFGIYKNGEYHDRLFPYDPVPRIIESDEYDE LEKGLKQRVNALNAYLKDIYSDKAIIHDGVVPEEYVYTSAGYFPQVNGVTPPGGIFAHIA GEDLVQGEDGRWWVLEDNLRIPSGASYPLFVRDIERRISPRLFRDVHIRDNREYPRLLRK AMDFVSTEGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKVYFLDYAGKRH RVGVVYRRLSDEFLDPFAFNPDSVIGVPGILSAYRAGNVAIVNAPGNGAADDKAIYYFVP QMIKYYLGEEPILNNAPTYMPMFEADRKEVLNRMGELVIKDVAEAGGYGVVFGSSLDAAA REELANRIKEEPRRFIAQEVIQFRDIDVVDPKTGEMSPRKCDLRAFVVTGKNTHVWYSGL TRYSSVPGQMIVNSSQGGGFKDTWVLAPESGVEHEYGAEVQVANLLSQSRRHSLSLVTAS KADNLYWLGRYTERAFTTLNQFFPFYDRVMDTDVDAFRPFAHALDLPEDFEDFDGFVNSF LYDGSNPDSVRSAVTSAFNNAVILRPELSSRLLQYVELAMTNITDAAKYAADAEDIYKQR DITDDMLAFWGGIENSPVDPTLKAFIFIGKYLERIDLYTRFGLTMEEMEAPLRKLASYSM ILDGMPLPSCFADGLSWLVGQLPSRGYQEVADLLKKYLDDYSGRVSALAIKDMGSLSSMN MDAKRP >gi|316915102|gb|ADCN01000047.1| GENE 5 6200 - 6598 193 132 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1722 NR:ns ## KEGG: BLJ_1722 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 30 132 1 103 103 183 97.0 2e-45 MVFAVLVDAEAYAVAGQLAVDRLATVYQFMGQSACCGFDHRACSLLWRLLWLQAVRRFER TLTPQAVTGFDGFNLRRARFNKRARMLQAGHFAGRVHLDDRTRLADHTHLADRTHLADRT HLADHTRYNEWL >gi|316915102|gb|ADCN01000047.1| GENE 6 6595 - 7506 714 303 aa, chain + ## HITS:1 COG:Cgl0551 KEGG:ns NR:ns ## COG: Cgl0551 COG0101 # Protein_GI_number: 19551801 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Corynebacterium glutamicum # 3 301 7 280 294 191 41.0 1e-48 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV GSCIKVGSGRKSLEWFADKMAEPVREGSSGPIAPQGLTLEHIAYPADDQLAARAEAIRAV RTL >gi|316915102|gb|ADCN01000047.1| GENE 7 7588 - 8130 873 180 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|239621037|ref|ZP_04664068.1| 50S ribosomal protein L17 [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 180 1 180 180 340 100 4e-93 MPTPKKGPRLASSPAHERLMLANMATSLFQNGRITTTLPKAKRLRPLAERLITFAKRGDL HSRRRVMRVIRNKSVVHILFTQIAEQMEQREGGYTRIVKIAPRVGDAAPAAVIELVTEPV AKKAVVKEAEAAAKVAEEEAPAVEAEATEAAEAVEAPVEETAAAEAEAPAEEAADAEKAE >gi|316915102|gb|ADCN01000047.1| GENE 8 8230 - 9225 1479 331 aa, chain - ## HITS:1 COG:MT3564 KEGG:ns NR:ns ## COG: MT3564 COG0202 # Protein_GI_number: 15843052 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Mycobacterium tuberculosis CDC1551 # 1 322 1 322 347 457 73.0 1e-128 MLIAQRPTLTEESLNPQRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGAL HEFTTLPGVQEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGKGEAVAGDITPPAGVTIAN PEQHIATLADDGELEIEFTVERGRGYVPAQMNKQDNDEIGRIPVDSIYSPVLKVSYKVEA TRVEQRTDFDKLILDVETKPAISPRDAVASAGSTLVELFGLCRELNAQAEGVEVGPAPVA EETNPEMAVPIEDLNLTQRSYNCLKREGIHTIGELVSHTEQDLLDIRNFGMKSIDEVKEK LQTLGLSLKSSPMAFDTNNLEGGTFFSPEDE >gi|316915102|gb|ADCN01000047.1| GENE 9 9306 - 9704 669 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336306|ref|ZP_00121529.1| COG0100: Ribosomal protein S11 [Bifidobacterium longum DJO10A] # 1 132 1 132 132 262 100 2e-69 MAAPKQAARKPRRRDRKSVPVGQAHIKSTFNNTIISITDPSGAVVSWASGGDVGFKGSRK STPYAAGMAAESAARKAMEHGVKKVDVFVKGPGSGRETAIRSLQSAGLEVGSITDVTPQA HNGVRPPKRRRV >gi|316915102|gb|ADCN01000047.1| GENE 10 9792 - 10202 665 136 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|118764947|dbj|BAF39126.1| 30S ribosomal protein S13 [Bifidobacterium adolescentis ATCC 15703] # 1 136 1 136 136 260 95 6e-69 MQDLRQQEGIAMARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLT DEQLITLRDYLEANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNART RKGPKRTVAGKKKATK >gi|316915102|gb|ADCN01000047.1| GENE 11 10318 - 10431 200 37 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466153|ref|NP_696756.1| 50S ribosomal protein L36 [Bifidobacterium longum NCC2705] # 1 37 1 37 37 81 100 5e-15 MKVSPSVKRICENCRVIRRHGRVMVICVNPRHKQRQG >gi|316915102|gb|ADCN01000047.1| GENE 12 10455 - 10673 285 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 114 76 7e-25 MAKDGVIEVEGQVVEALPNAMFRVELENKHIVLATISGKMRKNYIRILPQDRVVLEMSPY DLNRGRITYRYK >gi|316915102|gb|ADCN01000047.1| GENE 13 10850 - 11410 1170 186 aa, chain - ## HITS:1 COG:XF0275 KEGG:ns NR:ns ## COG: XF0275 COG0563 # Protein_GI_number: 15836880 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Xylella fastidiosa 9a5c # 1 185 12 196 198 177 48.0 1e-44 MRLLIMGPQGVGKGTQAALLAEHFNIPTISTGDIFRYNIKNKTELGFEAMSYTDKGELVP DSLTNKIVKDRLAKEDCKNGWILDGYPRNAAQVTALDEMLADLDTPLDHVVALEAARDVL LERMKKRAAEQGRADDTPEAIAKRLETYEKETAPLLDIYEARGLLVVVNGVGDIDEISGR IISHLE >gi|316915102|gb|ADCN01000047.1| GENE 14 11580 - 12917 830 445 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 9 436 19 437 447 324 41 4e-88 MRTLIQALKTKELRKKILFVLFIIIVYRIGSFIPTPGVDYNVVNKCMATIGSASQENFIG LVNLFSGGAMLQLSIFALGVMPYITASIVVQLLRVVIPRFEALHKEGQSGEAKLTQYTRY LTIGLAVLQSTTILVTARSGALFNYQCDQVIPDGSVFNLVVMVLIMTGGTGLIMWMAELV TDKGIGQGMSILIFMSICSGFLPQLWEIGYGTDGTDGDWLKFGIVVGVLVVILIFVDFVE LCQRRVPVQYTRRMIGRKMYGGSSTYLPLKINMSGVIPPIFASSILAIPTLIAQFGKSDQ SWVKWINANLANTTSVWYIALYALMIVFFCFFYTSITFNPDETADNMKQYGGFIPGIRAG NATSRYLTYVMNRLNTVGAVYLLFVALIPTVLIMALGLNAKLPFGGTTILIIAGVGLDTL RQAKAQTEQFQYTGFLFENVDHKEG >gi|316915102|gb|ADCN01000047.1| GENE 15 13191 - 13643 760 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466149|ref|NP_696752.1| 50S ribosomal protein L15 [Bifidobacterium longum NCC2705] # 1 150 1 150 150 297 100 6e-80 MADNEILQMHDLKPAPGAKKDRTRVGRGEGSKGKTSGRGAKGQTKRNHVRPGFEGGQLPL YMRLPKLRGFKNPFKVEFQVINIARLVELFPEGGEVAVADLIAKGAVRDNAPVKVLGDGE TTVAFTLKGVKASASAKSKIEAAGGSVSED >gi|316915102|gb|ADCN01000047.1| GENE 16 13646 - 13840 315 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227546494|ref|ZP_03976543.1| 50S ribosomal protein L30 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 64 1 64 64 125 98 2e-28 MILMAKNLKITLHHGIVNRTPAQRATVKTLGLNKIGKTVVREDTPANRGLVNAVRHLVTV EEVD >gi|316915102|gb|ADCN01000047.1| GENE 17 13837 - 14568 1208 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|189440586|ref|YP_001955667.1| 30S ribosomal protein S5 [Bifidobacterium longum DJO10A] # 1 243 1 243 243 469 99 1e-132 MSDNETKETQVAEETQNTVATESNNEDRKGRRGQRGEGRRGERRNRREENHGDELLDRVV TINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPR VRGTITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSATAVNV VRATVDALKQLEEPEEIAARRGLALDEVAPDALLRARAAGIAEARKAREEAAAAKAAEEK DGE >gi|316915102|gb|ADCN01000047.1| GENE 18 14565 - 14936 600 123 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466146|ref|NP_696749.1| 50S ribosomal protein L18 [Bifidobacterium longum NCC2705] # 1 123 1 123 123 235 100 2e-61 MSVAILGKGKKVALKRRHARIRKRISGTPERPRLVVTRSNRHMVAQVVDDTKGITLVSAS TLQADFAGFEGTKTEAAKKVGELIAEKAKAAGITAVVFDRGGNKYTGRVAAVADGAREGG LAL >gi|316915102|gb|ADCN01000047.1| GENE 19 14938 - 15477 907 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336516|ref|ZP_00121730.1| COG0097: Ribosomal protein L6P/L9E [Bifidobacterium longum DJO10A] # 1 179 1 179 179 353 100 5e-97 MASHIGKLPIAIPAGVEVKIEGQNFSAKGAKGSDSYVVPEGITAAVEGNEIVLTAADDLR PTRAKHGLARSIMAGMVKGVHDGYSKTLEIVGTGYRAVAKGQGIEFFLGYSHTITVNPPE GITLKVTDANHVVVEGTDKQVVGQVAANIRKLRAPEPYKGKGIKYSDERILRKAGKAGK >gi|316915102|gb|ADCN01000047.1| GENE 20 15495 - 15893 669 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466144|ref|NP_696747.1| 30S ribosomal protein S8 [Bifidobacterium longum NCC2705] # 1 132 1 132 132 262 100 2e-69 MTMTDPIADMLTRLRNASAAKHETVDMPYSKFKANIAEILKREGYIKDFTAKEAKVGQTL EVTLKYGPNGERSIQGIKRISKPGLRRYAKSDSLPMPLGGLGIAIISTSSGLLTQKECLD RGIGGEIVAFVW >gi|316915102|gb|ADCN01000047.1| GENE 21 15983 - 16168 333 61 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336514|ref|ZP_00121728.1| COG0199: Ribosomal protein S14 [Bifidobacterium longum DJO10A] # 1 61 1 61 61 132 100 2e-30 MAKTALKNKAAGKPKFKVRAYTRCQVCGRPHSVYRKFGLCRICLREKAHRGELPGVTKSS W >gi|316915102|gb|ADCN01000047.1| GENE 22 16170 - 16742 977 190 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336513|ref|ZP_00121727.1| COG0094: Ribosomal protein L5 [Bifidobacterium longum DJO10A] # 1 190 1 190 190 380 100 1e-105 MTDTTVEAPATPRLKVKYNEQIIPELEKEFKYSNPMQVARVQKVVVSMGVGAAARDSKLI EGAVKDLTLITGQKPKITKAKKSVAQFHLREGQAIGAYVTLRGDRMWEFLDRLLTLALPR IRDFRGINGHQFDGQGNYNFGLTEQSMFHEIDPDSIDHVRGMDITVVTSTKDDKEAYALL KHLGFPFKEN >gi|316915102|gb|ADCN01000047.1| GENE 23 16739 - 17074 542 111 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336512|ref|ZP_00121726.1| COG0198: Ribosomal protein L24 [Bifidobacterium longum DJO10A] # 1 111 1 111 111 213 100 1e-54 MAAKIKSGDLVKVIRGKDRGKEGTVKQVLSNDRLIVEGVQIVKKHVRATQQGQQAGIVST EAPIHRSNVMVIDPETKQPTRVGITVKEEARDGKVKTVRVRVAKKSGKELA >gi|316915102|gb|ADCN01000047.1| GENE 24 17076 - 17444 602 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336511|ref|ZP_00121725.1| COG0093: Ribosomal protein L14 [Bifidobacterium longum DJO10A] # 1 122 1 122 122 236 100 1e-61 MIQQETRLHVADNTGAKELLAIRVLGGSKRRYAGIGDVIVASVKDAIPGGSVKKGDVVKA VVVRTVKESRRADGSYIKFDENAAVILGSGREPKGTRIFGPVGRELREHKFMKIVSLAPE VI >gi|316915102|gb|ADCN01000047.1| GENE 25 17539 - 17805 443 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223466580|ref|ZP_03618116.1| hypothetical protein BIFBRE_00283 [Bifidobacterium breve DSM 20213] # 1 88 1 88 88 175 98 3e-43 MIMAEERNFRKVRRGYVVSDKMDKTITVELEQRSTHPLYGKVVRSTSKVKAHDEHNDAHI GDLVSIMETRPLSKTKRWRLESIIERAK >gi|316915102|gb|ADCN01000047.1| GENE 26 17802 - 18053 409 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336509|ref|ZP_00121723.1| COG0255: Ribosomal protein L29 [Bifidobacterium longum DJO10A] # 1 83 1 83 83 162 100 3e-39 MAVGTADYSIKNLNEKTNAEIEGFLKKSKEELFNLRFQHATGQLENTARLKAVKSDIARM YTVLRERELGISQEPAATESKEK >gi|316915102|gb|ADCN01000047.1| GENE 27 18053 - 18472 725 139 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23466137|ref|NP_696740.1| 50S ribosomal protein L16 [Bifidobacterium longum NCC2705] # 1 139 1 139 139 283 100 7e-76 MLIPKRTKYRKQHRPVRSGMSKGGNEINFGDFAIQSLAPAYVTNRQIEAARIAMTRYIKR GGRVWITIFPDRPLTKHPLGARMGSGKGAPEFWIANVRPGRVMFEIGGVSEDIAKEALRR AIDKLPMKCRIIAREGGDI >gi|316915102|gb|ADCN01000047.1| GENE 28 18479 - 19282 1352 267 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336507|ref|ZP_00121721.1| COG0092: Ribosomal protein S3 [Bifidobacterium longum DJO10A] # 1 267 1 267 267 525 100 1e-148 MGQKINPFGYRLGITENHRSKWFSDSNKAGERYRDFVLEDDQIRKEMSKDLERAGVSRIV IERTRDRVRVDIHTARPGIVIGRRGAEAERVRAKLEKLTGKQVQLNIFEVKNAALDAQLV AQGIAEQLTNRVTFRRAMRKAQQDAMRAGAKGIRIKLSGRLGGAEMSRSEFYREGRVPLQ TLRALIDYGFFEAKTTYGRIGVKVWIYKGDMTESEFEEQQAQQNNRPGRRGGDRRPRRGN RSAAPQAAEAPKAEAPAEAAPAAETKE >gi|316915102|gb|ADCN01000047.1| GENE 29 19285 - 19644 582 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336506|ref|ZP_00121720.1| COG0091: Ribosomal protein L22 [Bifidobacterium longum DJO10A] # 1 119 1 119 119 228 100 2e-59 MEAKAIARHVRVTPRKARRMVDLIRGKKATEAVTILKFAPQAAALPVRKTLESAIANARV KADKAGEPFRENDLYIKETYVDEGVTLKRFRARAQGRAARINKRTSHITVVVANKEGAR >gi|316915102|gb|ADCN01000047.1| GENE 30 19661 - 19939 490 92 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336505|ref|ZP_00121719.1| COG0185: Ribosomal protein S19 [Bifidobacterium longum DJO10A] # 1 92 1 92 92 193 100 1e-48 MTRSIKKGPFVDAHLQKKVDEQNEKGTKNVIKTWSRRSMITPDFIGHTFAVHDGRKHVPV FVTEAMVGHKLGEFAPTKTFKGHVKDDKKARR >gi|316915102|gb|ADCN01000047.1| GENE 31 19955 - 20785 1442 276 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336504|ref|ZP_00121718.1| COG0090: Ribosomal protein L2 [Bifidobacterium longum DJO10A] # 1 276 1 276 276 560 100 1e-159 MAIRVYKPTTAGRRNASVSDFSELTRSTPEKSLVRKKSKTGGRNSYGRITSRHRGGGHKR QYRLIDFKRWDKDGVPAKVAEIEYDPNRSARIALLHFADGEKRYIIAPKGIKQGDVIETG AQADIKPGNNLPLKNIPTGTVVHAIELRPLGGAKIARSAGAAVQLVAKDGAYAQLRMPSG EIRNVDARCRATVGEVGNEDHANIQLGKAGRARWIGRRPITRGESMNPVDHPHGGRTRGG KPPVSPWGKGEVRTRRPKKASNKMIVRRRPSGKNRK >gi|316915102|gb|ADCN01000047.1| GENE 32 20822 - 21118 488 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336503|ref|ZP_00121717.1| COG0089: Ribosomal protein L23 [Bifidobacterium longum DJO10A] # 1 98 1 98 98 192 100 2e-48 MVAIHKPAHDVILKPVVSEKSYAASDRGQYTFVVAPDANKVQIKQAIEEIFKVKVTNVNT LNRAGKKQRTRTGFGQRASQKRAIVTVAEGQTIDIFGN >gi|316915102|gb|ADCN01000047.1| GENE 33 21124 - 21780 1117 218 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336502|ref|ZP_00121716.1| COG0088: Ribosomal protein L4 [Bifidobacterium longum DJO10A] # 1 218 1 218 218 434 100 1e-121 MANVTLNVTDAKGQATGTVEAPEALFGVSAEDVQAHIPLIHQVVTAQLAAARQGTHATKT RGMVSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYA LSDRANAGRVAVVEFGITEPSTKAAVAALAPITADKFTTVVFTRDNINEWLSVRNIPTVH PIFVDQLNTYDVITSQYVVFTKEAFEAFVAAKTEPKEA >gi|316915102|gb|ADCN01000047.1| GENE 34 21787 - 22428 1093 213 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336501|ref|ZP_00121715.1| COG0087: Ribosomal protein L3 [Bifidobacterium longum DJO10A] # 1 213 1 213 213 425 100 1e-118 MSNRKALLGKKLGMSQVWDENGFFVPVTLVDVSTNVVTAVKTEESDGYKAVQLGYGAIDP TKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELAADLFEEGAEVDVTGTTKGKG FAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTV VSADVENGILAIKGAIPGPKGGIVLVRSAVKGA >gi|316915102|gb|ADCN01000047.1| GENE 35 22445 - 22753 525 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23336500|ref|ZP_00121714.1| COG0051: Ribosomal protein S10 [Bifidobacterium longum DJO10A] # 1 102 1 102 102 206 100 1e-52 MAGQKIRIRLKSYDHEVIDQSAKKIVETVTNAGATVVGPVPLPTEKNVFCVIRSPHKYKD SREHFEMRTHKRLIDIVDPTPKAVDSLMHIDLPADVNIEIKL >gi|316915102|gb|ADCN01000047.1| GENE 36 23112 - 24017 566 301 aa, chain + ## HITS:1 COG:no KEGG:BL1576 NR:ns ## KEGG: BL1576 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 301 43 343 343 510 99.0 1e-143 MTDMTSRRKTLKHDWFDNQPGAWVMVMLPAVAGFFIGGPNLDTLWLLATWAVCYCVQFSA AHWFKAHFSRRYLPPMLTYAVALIVIGLPFLITHTGILRWAPLYIVLVALSMLSSWLRKE RSLWGNAVSVIAASAMATVIASFGSTVETACVMPINAAHASCAAADVTAARTAIRNMPDL SQIFDLHAWWPAGSLPVSGLIATVLFALTQYGSVLVVKTMIRERGKCSYVAASWVWHVAL LLLAAVPSGRSPYLIAMTVLLLARAVALPVVTRRTTLKPVVTGITEAFASFIAFGCIIAA I >gi|316915102|gb|ADCN01000047.1| GENE 37 24349 - 27078 4474 909 aa, chain - ## HITS:1 COG:SP2026_1 KEGG:ns NR:ns ## COG: SP2026_1 COG1012 # Protein_GI_number: 15901847 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 14 466 8 463 464 541 61.0 1e-153 MAEAKKKVEATKPTPEEKQAAAEAEVDALVARAKKALVEFENLDQKQVDRIVAKASIAAL NKHLVLAKMAVDETGRGLVEDKATKNIFACEHVTNYLAGQKTVGIIREDDVMGIDEVAEP VGVVAGVTPVTNPTSTAIFKSLIALKTRCPIVFGFHPGAQKCSVEAAKIVRDAAIEAGAP ENCIQWIEHPSIQATGALMQHPGVATILATGGPGMVKAAYSSGKPALGVGAGNAPAYVDS DVDIVRAANDLVLSKHFDYGMICATEQAIIAHKDVYDQLIKELKVRKAYFVNAEEKAKLE QYMFGCTAGSGVKPVLNSAVPGKSPQFIAKAAGFEIPADATILAAECKEVSDDEPLTHEK LAPVQAVLKADNKEQAFEMCEKMLKLGAGHTAAIHTNNQELVREYGVRMHACRIIWNQPS SLGGIGDIYNAIAPSLTLGCGSYGGNSVSGNVQAVNLVNIKRIARRNNNMQWFKIPAKTY FEPNAIKYLRDMYGIEKAVIVCDKVMEQLGIVDKIIDQLRARSNRVTFRIIDYVEPEPSV ETVEKGAEMMREEFEPDTIIAVGGGSPMDASKIMWLLYEHPEIAFSDVREKFFDIRKRAF KIPPLGKKAKLVCIPTSSGTGSEVTPFAVITDHKTGYKYPITDYALTPSVAIVDPVLART QPRKLASDAGFDALTHSMEAYVSVYANDFTDGMALHAAKLIWDNLAESVNGEPGLAKTDA QEKMHNAATMAGMAFGSAFLGMCHGMAHTIGALCHIAHGRTNSILLPYVIRYNGQIPEEP TSWPKYNKYIAPERYQDIARNLGIDTGKTPAEAVENLAKAVEDYRDNKLGMNKSFQDCGV DEDYFWSVLDQIGMRAYEDQCTPANPRIPLINDMKDIAVGAYYGVSQAEGHKLRIEREGE AATEEASER >gi|316915102|gb|ADCN01000047.1| GENE 38 27415 - 27537 131 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCLDAEVMRQQSYICRRFWVTFLNQLSRNVEKMIAFENLL Prediction of potential genes in microbial genomes Time: Fri May 13 13:31:43 2011 Seq name: gi|316915099|gb|ADCN01000048.1| Bifidobacterium sp. 12_1_47BFAA cont1.48, whole genome shotgun sequence Length of sequence - 1932 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 118 - 177 3.4 1 1 Op 1 . + CDS 331 - 1491 1411 ## COG1940 Transcriptional regulator/sugar kinase 2 1 Op 2 . + CDS 1554 - 1932 306 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915099|gb|ADCN01000048.1| GENE 1 331 - 1491 1411 386 aa, chain + ## HITS:1 COG:CAC3673 KEGG:ns NR:ns ## COG: CAC3673 COG1940 # Protein_GI_number: 15896905 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Clostridium acetobutylicum # 10 360 9 371 385 112 25.0 1e-24 MPSTAVKAHNRSAMAQYLYGHSHVTKQELERELGLSLPTITQNLHALEDDGLIRKGELQD STGGRKAQNYEFNPDHRTAIGVVMRSNELRLCAINLYGNVIEKRNDALPYRNTNVYYQRI GGIINNFAADVEKKHGKVLGVSFAIQGILSPDATTIIFGTIMGNTGLTLETISQSVHYPC MMIHDSDASAMAELWFDSTLTDAVCVYLERRPGGAVITGGKLYQGPNQCNGAIEHMTLVP GGRECYCGQRGCMDTYCSPETLPEDYESIPGFFSVLEQGERHHRERMDEWLDYVAQAIVN ARSIIAGDVIVGGEAAQHLEDSDIEDLKARVIARSPFGTDHFNLRKSYCAEDQNIIGAAL RFAENYLDDICGAAERGRKSRAPLSK >gi|316915099|gb|ADCN01000048.1| GENE 2 1554 - 1932 306 126 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 126 1 126 358 216 92.0 3e-55 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRV Prediction of potential genes in microbial genomes Time: Fri May 13 13:31:53 2011 Seq name: gi|316915078|gb|ADCN01000049.1| Bifidobacterium sp. 12_1_47BFAA cont1.49, whole genome shotgun sequence Length of sequence - 26048 bp Number of predicted genes - 28, with homology - 20 Number of transcription units - 21, operones - 7 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 64 - 162 87 ## + Prom 166 - 225 2.3 2 1 Op 2 . + CDS 262 - 393 164 ## 3 2 Tu 1 . - CDS 498 - 1007 -171 ## gi|268611584|ref|ZP_06145311.1| hypothetical protein RflaF_19026 - Prom 1124 - 1183 2.1 4 3 Tu 1 . + CDS 1315 - 2139 758 ## BLD_0556 hypothetical protein + Term 2358 - 2391 -0.4 5 4 Tu 1 . - CDS 2227 - 2778 580 ## COG1225 Peroxiredoxin 6 5 Tu 1 . - CDS 2908 - 3486 178 ## COG0388 Predicted amidohydrolase - Term 3610 - 3654 1.7 7 6 Op 1 1/0.000 - CDS 3738 - 4595 756 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 4648 - 4707 2.9 - Term 4664 - 4700 -0.1 8 6 Op 2 . - CDS 4747 - 5595 252 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Term 5606 - 5657 13.7 9 7 Op 1 . - CDS 5689 - 6939 1940 ## COG0438 Glycosyltransferase - Term 6996 - 7038 6.9 10 7 Op 2 . - CDS 7068 - 7532 567 ## BLD_0563 hypothetical protein 11 8 Tu 1 . - CDS 7640 - 9535 1578 ## BLJ_0920 hypothetical protein - Term 9589 - 9632 8.3 12 9 Tu 1 . - CDS 9695 - 11335 1935 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 11414 - 11473 4.3 - Term 11461 - 11503 6.3 13 10 Op 1 21/0.000 - CDS 11524 - 13059 2091 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 14 10 Op 2 . - CDS 13061 - 17632 6378 ## COG0069 Glutamate synthase domain 2 - Prom 17746 - 17805 3.2 15 11 Op 1 . + CDS 17672 - 17878 113 ## BLJ_0917 hypothetical protein 16 11 Op 2 . + CDS 17977 - 18261 255 ## COG1609 Transcriptional regulators + Term 18266 - 18303 6.0 17 12 Tu 1 . - CDS 18314 - 19339 1238 ## COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase - Prom 19408 - 19467 2.0 18 13 Op 1 . + CDS 19696 - 19779 66 ## 19 13 Op 2 . + CDS 19819 - 20124 210 ## BL0837 hypothetical protein - Term 19967 - 20001 -0.8 20 14 Op 1 . - CDS 20181 - 20369 248 ## BLJ_0913 efflux-type transporter 21 14 Op 2 . - CDS 20414 - 20527 102 ## 22 15 Tu 1 . - CDS 20632 - 21678 1172 ## COG1609 Transcriptional regulators - Prom 21711 - 21770 2.9 23 16 Tu 1 . + CDS 22265 - 23218 595 ## BLJ_0911 hypothetical protein + Term 23243 - 23281 0.7 + Prom 23454 - 23513 3.9 24 17 Tu 1 . + CDS 23580 - 23708 227 ## 25 18 Tu 1 . + CDS 23824 - 23952 274 ## - Term 23928 - 23968 4.1 26 19 Tu 1 . - CDS 24009 - 24101 75 ## + Prom 24021 - 24080 3.2 27 20 Tu 1 . + CDS 24319 - 25683 1659 ## COG0534 Na+-driven multidrug efflux pump + Term 25729 - 25786 2.1 - Term 25718 - 25760 -0.9 28 21 Tu 1 . - CDS 25817 - 25936 61 ## Predicted protein(s) >gi|316915078|gb|ADCN01000049.1| GENE 1 64 - 162 87 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRSARGFVSLRLLSEAKARLNRRIASLTAYQ >gi|316915078|gb|ADCN01000049.1| GENE 2 262 - 393 164 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALRFLSTKEVSERLGVKNASVYKLPEPDVYMALLKVSYLNNR >gi|316915078|gb|ADCN01000049.1| GENE 3 498 - 1007 -171 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|268611584|ref|ZP_06145311.1| ## NR: gi|268611584|ref|ZP_06145311.1| hypothetical protein RflaF_19026 [Ruminococcus flavefaciens FD-1] # 23 158 3 125 141 81 34.0 1e-14 MVYANSAIGDEDDCEVVMCIPQNDEQEPWTWCVIANVVDEHEVGVDHHIEHGTKIFSPGT KVYVSTEWRTSLKDDGGTLFVIGKARKQWRMVGMFIPRNRLTNFRVGRVFDPRVLRRMAK DCRQSVPDPSEWGWRWWGNDEDAHQTVIKRVEYFSQDGFSLPEAGAEDD >gi|316915078|gb|ADCN01000049.1| GENE 4 1315 - 2139 758 274 aa, chain + ## HITS:1 COG:no KEGG:BLD_0556 NR:ns ## KEGG: BLD_0556 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 274 1 274 274 499 100.0 1e-140 MGLFDSLKNMFAHHEHHHGASIGQPLTLADAKAVLAFIVVHQQLADMRKVADAVKQLQDE MPQYITFGMSHYYSEPKRVRFQSEGGKFIDADAIATAFAETTVLQDECKIQHLMGDIEDN REHRDPAKTPAVPIDELVRVTNERLAAGNDEGQRRAWLFALFDQLDDIVEATKNNPEPLA AALNTILRNSSTIIGKSATADAGNSSNNANAGDARSRIISLIADALFPAAESSKTSESSA SAAIRELMLNPTATSLDYMPAIDVLRAHGLTICR >gi|316915078|gb|ADCN01000049.1| GENE 5 2227 - 2778 580 183 aa, chain - ## HITS:1 COG:MT2597 KEGG:ns NR:ns ## COG: MT2597 COG1225 # Protein_GI_number: 15842053 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Mycobacterium tuberculosis CDC1551 # 19 175 6 155 157 159 51.0 3e-39 MGRMTATVHDSAQAPVYARLQEGSEAPDFTLPAIVPGTAENGLINLFDVLEDGRRVVLYF YPAAMTPGCTTEACDFRDNLARLESQNVSVLGVSKDSLEKLRKFAEHDHLTFPLLSDPDL TVHKLYGAYGEKKLYGKIHVGVIRSTLIINPDGSVALARYNVRAKGHVDSLLKALEKLEK LEK >gi|316915078|gb|ADCN01000049.1| GENE 6 2908 - 3486 178 192 aa, chain - ## HITS:1 COG:STM0631 KEGG:ns NR:ns ## COG: STM0631 COG0388 # Protein_GI_number: 16764008 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 19 190 91 261 262 177 50.0 2e-44 MGTVHVAPEQGTERDADSRVSNTFLVICDGEIIAEYRKLHLYDAFSARESDVVLPGDALP PIVDIDGWKIGVMTCYDVRFPETARSLAVRGADAIVVSAAWVRGPLKEQHWKLLNAARAL ENTCYVLACSEVSSRNIGCSRIINPMGEVVASAGDEGAELIATGLSRECLASARQIMPVL QNRRFADPQLCD >gi|316915078|gb|ADCN01000049.1| GENE 7 3738 - 4595 756 285 aa, chain - ## HITS:1 COG:lin2453 KEGG:ns NR:ns ## COG: lin2453 COG0561 # Protein_GI_number: 16801515 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 10 285 4 281 281 124 31.0 2e-28 MTESDMTGSKLVFIDIDGTLADENHIVPESAKTACARAQANGHKLFICTGRSVPKIERNI LDLGFDGVVSVAGAQANIGDKLLFQHLVSPEAIDAAMAYFAEHHIESYQWQGADGMYISE GYRRHLESKGKTWNRGEFARFWHLLDEVEVPAGSTLGHTIHVSKGSYFTGPEPDVSFENT QHDLAPWFELVHGSYDKISPNNGELLINGIDKGTAVRDVASLLGYAIADTIAIGDSDNDT AMLKAAGTSVAMGNAIHGIQAFCDFTTTDIHQDGLANAFKTLGLV >gi|316915078|gb|ADCN01000049.1| GENE 8 4747 - 5595 252 282 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 237 1 227 311 101 29 4e-21 MSQTVLQLDNVEFRRNRRVIITDVNLTINAGERWVLFGPNGIGKSTAVGMLATRTFPSEG RVFILGHQLGKYDVFKLRTRIGLASADLGRQFPEFEDPLDAVVTGLSAVTGRWRDTYTDE EYARARQLLRDFRVSYLEGKEMWRLSEGERTRVLIARALMGDPELLIMDEPTTGLDLGGR EQVMRTLSRIGEESSERAVVLVTHRLEEIPAGFDHIAIMGRKPIPAEDATEAGVDSMGNP GAGTIVYTGSLEDGLTDERLSDLFGMPIEVQHTHGRWAAYAV >gi|316915078|gb|ADCN01000049.1| GENE 9 5689 - 6939 1940 416 aa, chain - ## HITS:1 COG:Cgl1093 KEGG:ns NR:ns ## COG: Cgl1093 COG0438 # Protein_GI_number: 19552343 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Corynebacterium glutamicum # 6 411 1 385 385 365 49.0 1e-101 MKVDILTREYPPHVYGGAGVHAEELSKVLAERIDVTVRAFDGKRTEADIPAIPNAANAKG SLKVVGYDTPSELADANPALKTFGVDLQIANDVDADIIHAHTWYACLAGYLAKMLHGTPL VITAHSLEPFRPWKREQLGGGYNLSSWAEKDAYEHADRVIAVSGGMRKDILTAYPNLDPD KVVVVYNGITMSDFATPAPDDPGWKVFERYNIDRSKPTLLFVGRITRQKGLPYLLKALHL ISKDIQVVLCAGAPDTPEIAEEVKNAFAKLDEERGNIVWIEEMLPKPELNALEHGCDAFI CPSIYEPLGIVNLEAMACGLPVVASATGGIPEVVVDGETGYLVPIDQLHDGTGTPTDPDK FVHDMAAAIDKIMADPELAKKMGQAGYERARDVFSWESIGDKTVEVYQSVLDEQKK >gi|316915078|gb|ADCN01000049.1| GENE 10 7068 - 7532 567 154 aa, chain - ## HITS:1 COG:no KEGG:BLD_0563 NR:ns ## KEGG: BLD_0563 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 154 1 154 154 308 99.0 6e-83 MPNRAERRAQAKAGRRGVPSQYDQTRGRGRSGMIDEYQLQQKSQRLQDGTDGTEWKPSGG TIADTETLLTTNPNYTNPKMFKAPHSLRQWFRVGSWTLIAIAIIAFFVVMWLPSHPMWLI ITVSAVFIVGVLSLFFTAGDSKHNPNLDENGTAV >gi|316915078|gb|ADCN01000049.1| GENE 11 7640 - 9535 1578 631 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0920 NR:ns ## KEGG: BLJ_0920 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 631 1 631 631 1330 99.0 0 MEFTVSGTTVRFDERTMQFAFTRDGAEWNTCADFKPTLQCAQGTFAFADATSITHEQRET GTGTGIRSIFTGFGHSAYSFETYVWVERASGDVLFEWIPLNEQGLNITNVTWPAAMDFDC ADDHDTTLITHEQGVMIPNTWPTAVSTKDIAFDGRFETAGGYMPWFAQLRADGHGYIAIC ETPWNAGYGIDHPSNGPYTHINTWFEPSLGTMNYRRVVRYQFLDHADHTAVCKAYRSYVN ERGRLRTLVEKAARNPSVRDLIGRSWVHIGIKTKVQPDSYYYDKDHPEKNESLVTFAQRE KQMRTLHSMGAGRLYMHLDGWAQPGYDNAHPDYLPACQEAGGWEGMKSLVDACHEQGDIF GTHDQYRDYYFTAQTFDANNAIRLADGTMPEHARWAGGRQTYLCAELAPDYVRRNFAEIA AHGIKLDCAYLDVFTCNEGDECSNPEHRMTRRECFDRRAECFEYLLSHGILSSSEEVSDW AVPSLIFCHYAPYDFQMRSPNEPRQGVPVPLYNLVYHDCVIEPWMMERVVDGDDYMLYAL LNGGAPYLIRDAAYIGVDGDMDDEQRARTENDIERCHTVAAFHERVGMQELVRHEFVDDD PLVQRSVFADGTAVTCDFHTQTYRITDCPHH >gi|316915078|gb|ADCN01000049.1| GENE 12 9695 - 11335 1935 546 aa, chain - ## HITS:1 COG:Cgl1944 KEGG:ns NR:ns ## COG: Cgl1944 COG4166 # Protein_GI_number: 19553194 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Corynebacterium glutamicum # 38 544 42 533 534 432 47.0 1e-121 MNTRHVTSLVAAGAAIVMLLSGCGSTGTSNSSNASDSNIISVYGSEPAHPLFPGNTTEAG GGKVVDQLFAGLVTYDAKGGIHNEVADSITSSDNATHYVIKLKSGWKFTDGTPVTAHSFV NAWNYTANSANKQASASFFSTIEGYDDLQKPDVDPKATLSGLTVVDDNTIDVKLSQPDSA FPVKAGSHAYMPLPESAFKDPKKFGQYPVSNGPYKFVSWQHNHSIEMVKNPDYKGNRVAK NDGLNFKIYTSPDSAYADLRGGNLDFTNTIPDTALTSFQSDKSLKAYNEPGGNTLTFTIP EWLEHFGQNEEGNLRRQAISMSIDRKTVAEKIFHGTATPAVDFLAAPISAYSKELKGNEV LKYNPSKAKELWAKANAISPWSGEFGIAYNADGTAKNWVEAICNYIKNTLDIDAKSIPMS TSDEFLSNVDSGKMTSAYRSGWGPDYPSADNYLVQLYDSSSADGKGGNSGNYKNPEFDAM MDKALSAPSTEEADKYYQQGEEILLQDLPAIPLWNQNATAASTSAISGVAFDYGGGPVFT ALTKKQ >gi|316915078|gb|ADCN01000049.1| GENE 13 11524 - 13059 2091 511 aa, chain - ## HITS:1 COG:MT3973 KEGG:ns NR:ns ## COG: MT3973 COG0493 # Protein_GI_number: 15843490 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Mycobacterium tuberculosis CDC1551 # 1 507 1 487 488 484 53.0 1e-136 MGDPRGFLKVRTRRELAERPVEERIKDWFDVHAETGLQPWTQTQAARCMDCGTPFCMTGC PLGNLIPEWNDLVRQGKWEDAYNRLSMTNNFPEVTGRICPALCEQACVLGIHQPPTMIRL DEQTIIDQAWDLDYVKPLPPQRLTDQTVAVVGSGPAGLAAAQQLTRAGHTVVVYEKDDAI GGLMRYGIPNFKLEKGLLDRRVKQMEAEGTRFRTNVEIGKDITWDDLRDRYDAVVVAIGS RVPRDMKIPGRELDGIHFALDFLPDATRRIFGVKPVHDITAKDKHVIVIGGGDTGSDCLG TSIRQGAKDVTVLQIMPKEPSSRPDNSPWPTFARTYQKTSSMEEGGEYIYSTDSVNFEGT EEEKAKVTIDNSTTAEGFVADERGHVTGLKVVSVAPGENGPFTRQPGTERVLPADLVLIS VGFLHPDTETILDQLPVELDKRGNIARNDKFATSQDGVFVCGDAGRGQSLVVWAIAEGRS CAAAVDEYLSKEKSELPAPIKASQRPMMLPR >gi|316915078|gb|ADCN01000049.1| GENE 14 13061 - 17632 6378 1523 aa, chain - ## HITS:1 COG:Rv3859c_2 KEGG:ns NR:ns ## COG: Rv3859c_2 COG0069 # Protein_GI_number: 15610995 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Mycobacterium tuberculosis H37Rv # 397 1192 8 812 812 966 60.0 0 MTFKAPLDLTVHAPDGMYDPANEHDACGVGMVTTLNKRPERKIVTDAIEVLVNLDHRGAV GAEENTGDGAGILMSMPDEFMRATVPAELPEAGHYAAGIAFLDRDIETSGQQEQAIAKIV REEGLEVLAWRVVPTNPDGLGLQALAAMPGFKTLVVASPDGALAGVDLDRKTFRIRKRVE HEVGVYFASLSARTITYKGMLTTMQLTHFFEDLNDERMKATIAIVHSRFSTNTFPSWPLA QPFRLLAHNGEINTIQGNRNWLSAREGRLSSELLGEFEPLLPITTPGYSDSGTFDECLEL LHLAGRSLPHAICMMLPPAWEKNPDLDPDVRAFYEYNNTLIEPWDGPADIVFTDGTQVGA LLDRNGFRPGRWQLTDDGYIVLASEAGVLPEIAQEHIVSKGRLEPGKMFLVDTAEGRIIP DEEIKKTLASQHPYRKWVEGNSVEMSDLPRREHVSHSGQSVQRRQRAFGYTEEDLKLLLT PMANTGKEPLGSMGNDAPMPALSSRSRMLFDYFTQKFAQVTNPPLDWEREEIVTSLESAI GPEPNLLADSELHAKKILIPLPVVNSDEMAQLKRLDKARILGGYYRPYVVKGLYQVAGGG KALEERLDEIFAEIDEAIANGKNFIVLSDRESNHTWGPIPSLLLTSAVQHHLLRRHTRTQ ISVAVEAGDVREIHHVALLIAYGAACVNPYLAFESVEDLARNGYLKVDADTAVKNLTKAL STGVLKIMSKMGVSTIMSYRGAQLFEAVGLSQEVIDEYFTGTTSRVGGVGLEEIAEEVAI RHRVAYPNQWSASPHRNLRTGGDYKWRRTGEDHLNDPEAIFLLQQSTQRGDYQMFKKYSH HINDTSNRLMTLRGLMKFNTNRKPIDIAEVEPASEIVKRFSTGAMSYGSISQEAHETLAI AMNSIGARSNSGEGGESDDRINDPQRYSRIKQIASARFGVTSDYLVHATDLQIKLAQGAK PGEGGHLPGAKVPPWIAKVRHATPGVELISPPPHHDIYSIEDLKQLINDAKMANPKARIH VKLVSEFGVGTIAAGVAKCHADVVLISGYDGGTGAAPLNAIKHAGTPWEIGLSETQQTLI LNGLRSRIVVQCDGELKTGRDVVIAALLGAEEFGFATAALIVEGCVMMRACQKNTCPQGI ATQDPELRARFKGKPEYVVNFFMFIAEEVREILAQLGFRTLEEAIGHVECLDQDEAIKRW KSGGIDLSNVLKQAGPVPGTILHQTIEQNHELEKALDNKLIELAQPALEHKEPVRIEMPI RNVNRTVGTMVGYEITRRYGEEGLPDDTIDMTLHGSGGQSIGAFIPRGETMRIYGEVNDY AGKGLSGGRMIVRPEDNVTFDKHSNVIAGNVTGFGATSGQMFVAGRAGERFGVRNGGATF VVEGVGDHGCEYMTGGTVVVLGPTGRNFGAGFSGGNTYVLDLDMKKVNPGAIKSGALLFK SLDAETSKLVYALVKQHAEETGSQFAEALLEDWNETVKRFTHVVPKQFVAMTKAMEEAKA NNVDFNTPGAWEKVYEQVMEGAR >gi|316915078|gb|ADCN01000049.1| GENE 15 17672 - 17878 113 68 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0917 NR:ns ## KEGG: BLJ_0917 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 68 240 307 307 136 94.0 2e-31 MPLRSLLLTQYRCSMSFTFHVSIYRVAIKVNSDSQAIFFMASYGGISNFFARNVYLTTRK YDTETSVS >gi|316915078|gb|ADCN01000049.1| GENE 16 17977 - 18261 255 94 aa, chain + ## HITS:1 COG:CC2284 KEGG:ns NR:ns ## COG: CC2284 COG1609 # Protein_GI_number: 16126523 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 2 76 279 354 362 63 40.0 7e-11 MSDTIAIGALRELTEHGIHVPDDVRLMGFDGIPFSACTNPPISTVAMDVPAMARTVIDRM VTLNESNLRHERPDDITHDHIQFQVMPRTSTLAA >gi|316915078|gb|ADCN01000049.1| GENE 17 18314 - 19339 1238 341 aa, chain - ## HITS:1 COG:mll2179 KEGG:ns NR:ns ## COG: mll2179 COG3804 # Protein_GI_number: 13472019 # Func_class: S Function unknown # Function: Uncharacterized conserved protein related to dihydrodipicolinate reductase # Organism: Mesorhizobium loti # 9 326 3 321 329 110 25.0 4e-24 MQPIKAIQYGCGKMAKYTIRYMHEKGIQIVGAIDVNPEVVGMDAGVFAGIGPINVPIRAD AEAVLNECDADIAVVTLFSFENEIATMCEQCLARGISVITTCEECIYPWTTDPATTNRLD IIAKEAGATMVGSGMQDIYWVNMVSTVAAGCHSIKKITGAVSYNVEEYGLALAKAHGCGL TAEEFEAELAHPETVVPSYVWNSNEALAQKLGLTIASQTQASVPYFSDVDVYSETMGEMI PVGKCIGMSAVVTTETNQGITLETACIGKVYGPDDGDMCDWKIEGEPDVEFHVVKPATVE HTCATIVNRIPDVLNAPAGYVTVDQLDEISYLTYPAALYVA >gi|316915078|gb|ADCN01000049.1| GENE 18 19696 - 19779 66 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISRIAIPSGAHPWNIVYMVAERIAES >gi|316915078|gb|ADCN01000049.1| GENE 19 19819 - 20124 210 101 aa, chain + ## HITS:1 COG:no KEGG:BL0837 NR:ns ## KEGG: BL0837 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 101 8 108 108 183 100.0 1e-45 MGGLDVRPATDADLLGALILKSAAYQADHAGYGDRHLYDAAMLASLITDPDAETRRLHSH TDRRRIKLPYDMLTDESPYWNNLDEQHRRTGFDAIETLADW >gi|316915078|gb|ADCN01000049.1| GENE 20 20181 - 20369 248 62 aa, chain - ## HITS:1 COG:no KEGG:BLJ_0913 NR:ns ## KEGG: BLJ_0913 # Name: not_defined # Def: efflux-type transporter # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 60 1 60 157 77 71.0 2e-13 MTFEQSATLKTQPQTSGTISAADAVMQSARDERIPGKLICTIMAVVIVIVFVAMLHALRN RK >gi|316915078|gb|ADCN01000049.1| GENE 21 20414 - 20527 102 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVYVILIDILNHSVLQGLLRKMAIYQQFSKSPHDGRL >gi|316915078|gb|ADCN01000049.1| GENE 22 20632 - 21678 1172 348 aa, chain - ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 12 310 8 309 333 139 32.0 7e-33 MARSAGRTRPVIKDVAKLAGVSAPTVSRYLNGTVNVTEDKRERIAKAIKELGYEPSIVAR ALSNREMDSVVVFAANPSAFSTSETNHGVEAAARKRRFLLNIVSLDESDMDSVKARVRMG LSIRPAGVIVYEYDRAGIAALEYIPKDMPMVVVGGSFGDGEYQVINAERDGGRWMTMHLL DLGHRTVFHVGRPEGPTDNTRTNGWRDALKERGVTAPDPIIVPDDDLEESVKAGRTLGRR GDVTAIFAGNDETAIAVIRGLREVGRRVPADVSVVGFDDRNFGAMWNPALTSYTQNFLDM GERSFRMLFEQIQAKRAGDDAPPSQVEVVQGKPCLRASERAYGDGEIA >gi|316915078|gb|ADCN01000049.1| GENE 23 22265 - 23218 595 317 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0911 NR:ns ## KEGG: BLJ_0911 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 317 1 317 317 643 98.0 0 MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTR EQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNR IYINRIPTRKHNGILLTTPARTLLDCAAFPFPQALPIYDSALRKSLTTIEEVQSLMIQSV CDEVSVTKLLKYADPLSENGGESLMRGQITELSFGIPLLQVQFMNPDNPAMSYRVDFCWK LADGRIIVAEYDGMAKYADISNKNRASLQAKMEYDRRRDRHLREQGVTEIVHVFYEDLLR PINLETKLLKAGVPKIR >gi|316915078|gb|ADCN01000049.1| GENE 24 23580 - 23708 227 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLKDSMIRGLAVYGLSSMSQCGRANSSTLVDLINKANKNAR >gi|316915078|gb|ADCN01000049.1| GENE 25 23824 - 23952 274 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLKDSMIRGLALSGMDAIARAGYADSKMFADIINAANKDAR >gi|316915078|gb|ADCN01000049.1| GENE 26 24009 - 24101 75 30 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDPVVPVIVQFYCVELLRYSIIVVCRPIAA >gi|316915078|gb|ADCN01000049.1| GENE 27 24319 - 25683 1659 454 aa, chain + ## HITS:1 COG:lin0989 KEGG:ns NR:ns ## COG: lin0989 COG0534 # Protein_GI_number: 16800058 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 2 443 5 437 453 206 30.0 1e-52 MDNELFEKAPIPEAYFSLAMPVVLSMLVTLVYNMVDTYFIAHTGNTDMVAGVSLTAPVFT VMIALGDIFGLGGSSVISRLFGQHRFADGKRLSAFCFYAAIATGLLILVLGLAFRDPMLA LLGATDDTWQYASDFYTLIIVGSPFIIVSMTPSNLLRTEGHAVQSMIGSVAGTAVNIVLN PLFIHGFGWGAAGSAGATVIANICTDAYFVWFTLRHSSNLSIDPRTVIDRARRRLAVTAR EVGSILAIGIPSAITNLTQSVGIVMINLFLLPYGTDAVAAMGIALKVIMIAVLVFVGFAF GAQPLIGYNYGARNMPRLRGILRFSYLFLSLFALVMTVVLSLSDRLLMGFFIEDATIITL GAGMLRVQLLSLVCVAVVMVTTCTFQSAGKAVGAFVLSISRQGVMLAITLFVGSRLAGYQ GVIAAQAIADLLTAIVAVILFVVMLPELRSRKAR >gi|316915078|gb|ADCN01000049.1| GENE 28 25817 - 25936 61 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRATLETVSCGELTAVYRKDSDTGIVELVSWIVDASSVL Prediction of potential genes in microbial genomes Time: Fri May 13 13:33:00 2011 Seq name: gi|316915059|gb|ADCN01000050.1| Bifidobacterium sp. 12_1_47BFAA cont1.50, whole genome shotgun sequence Length of sequence - 22777 bp Number of predicted genes - 21, with homology - 19 Number of transcription units - 7, operones - 3 average op.length - 5.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 304 392 ## BLD_0058 IS30 family transposase 2 2 Tu 1 . + CDS 551 - 2146 1833 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 3 3 Op 1 . + CDS 2438 - 4168 1399 ## BAD_1390 hypothetical protein 4 3 Op 2 . + CDS 4227 - 5705 1343 ## COG3944 Capsular polysaccharide biosynthesis protein 5 3 Op 3 25/0.000 + CDS 5710 - 6864 1125 ## COG0438 Glycosyltransferase 6 3 Op 4 8/0.000 + CDS 6861 - 8204 695 ## COG0438 Glycosyltransferase 7 3 Op 5 8/0.000 + CDS 8201 - 9265 442 ## COG0451 Nucleoside-diphosphate-sugar epimerases 8 3 Op 6 1/0.000 + CDS 9326 - 10588 1619 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 9 3 Op 7 . + CDS 10626 - 11690 248 ## COG0438 Glycosyltransferase 10 3 Op 8 . + CDS 11718 - 12548 549 ## BAD_1506 nucleoside-diphosphate-sugar epimerases-like + Term 12620 - 12660 -0.2 11 4 Tu 1 . + CDS 12967 - 13092 116 ## 12 5 Op 1 . + CDS 13257 - 14138 179 ## KPN_02506 glycosyltransferase 13 5 Op 2 . + CDS 14157 - 15500 345 ## gi|224024002|ref|ZP_03642368.1| hypothetical protein BACCOPRO_00719 14 5 Op 3 . + CDS 15500 - 16432 702 ## LLKF_1315 hypothetical protein 15 5 Op 4 . + CDS 16499 - 17893 640 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 16 5 Op 5 . + CDS 17911 - 18420 275 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 18454 - 18500 8.5 17 6 Op 1 1/0.000 - CDS 18500 - 19651 821 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 19733 - 19792 3.6 18 6 Op 2 1/0.000 - CDS 19919 - 20263 197 ## COG2801 Transposase and inactivated derivatives 19 6 Op 3 9/0.000 - CDS 20427 - 21188 636 ## COG1484 DNA replication protein 20 6 Op 4 . - CDS 21185 - 22669 947 ## COG4584 Transposase and inactivated derivatives 21 7 Tu 1 . + CDS 22668 - 22757 65 ## Predicted protein(s) >gi|316915059|gb|ADCN01000050.1| GENE 1 1 - 304 392 101 aa, chain - ## HITS:1 COG:no KEGG:BLD_0058 NR:ns ## KEGG: BLD_0058 # Name: not_defined # Def: IS30 family transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 101 29 129 423 189 100.0 4e-47 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQIADRLRLGDSIRAIARLLGRDPG >gi|316915059|gb|ADCN01000050.1| GENE 2 551 - 2146 1833 531 aa, chain + ## HITS:1 COG:all4160_2 KEGG:ns NR:ns ## COG: all4160_2 COG2148 # Protein_GI_number: 17231652 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Nostoc sp. PCC 7120 # 308 531 10 226 226 191 43.0 4e-48 MFEMSSLSSNGQPSTRSRQANSGDRATAQLSDIRQKQLSHVLYWRFFVNLALMLIDAAMY IIAGATVLNLRHEATPFYSSRFNFTIDSTVYFMIMACFWVWSLYVAGIYHRHVMGDGYQL NVLLVKGMVVCWVVQCAFNYFFNLGLTLTSLCLVVIAGWLLTMVERIASRAFITRSRSKG AYAYGTVIIGSPHGIGRTLKFLGQRRQLNYRPVAVCPIHLNPDTGLIEQSTDHETLREEM QKNEGCQLPVLEYSDHNLAEQIIDMNAQTVMVADELHRYSDNYDIFSVRMESFGLEIAVL ASAADTSNHEIQVRSIQGTTIITQRLAQYTPARRLTKRLFDLVISSLAIICSSIITIPVA IAIKVTDGGPVFYKQTRMGLRGKPFQMYKFRSMVVNADALKKELAKETGQTDRFIFKMKN DPRITKVGHFIRRFSIDELPQFLNVWMGDMSVVGPRPPLPEEYARYNRLYATRMLVKPGI TGPWQVSGRSDLSAEESEALDVAYVQNWSIMGDIVLLFRTVGAVLSHKGAY >gi|316915059|gb|ADCN01000050.1| GENE 3 2438 - 4168 1399 576 aa, chain + ## HITS:1 COG:no KEGG:BAD_1390 NR:ns ## KEGG: BAD_1390 # Name: not_defined # Def: hypothetical protein # Organism: B.adolescentis # Pathway: not_defined # 23 576 109 655 657 375 38.0 1e-102 MVLIVIGALLLIIAALAAWLGLSALKAKNEVEAAIQAASRIQSQVQAGDTDKAQASIEAF SQHIDATYVQTKQPVWKLATLVPYYGSDVKAARDMVHILEDVSNNALPKLAKAAQALDFN SIGIKDGTIQLGDMASVAQDLAAANGVVADASVDMGKIGDTHIPQITEAVQQGRSRFKEL ASLTDAASRLADVLPKMFDLDASDGGGSGSGPRTYLVLAQNNAELRATGGIPTAWATLTV DTGKISMSTFGDPPRNGLFSQDEAASVLTAEERNLFSTKMATDYPDINFTPDFPRVADIA SQIWHRAGHDDVDGVISVDPVFLQRLLKVAGPVTLSDGTVMSGDNAEQRILNQIYIDTDT QAEQTDFFTMAASEIFTHVLKNVDGKNQQLVQTFQESVSDGHLYVWSAHEDEQRRILGTT IAGELQSKPAHSVTGVYFNDATMGKMDWYLKREVTSTYDKTYPSGAKQYTVHIKLTNTAD AAEVNAAPDLLRGYDHNGNPRTGEIETVLYVYAPDEGRIVDWTQDFDQFAVHDGLTVGVK TVTLRPGESFETTVHVLASPAADENEMILRQTPLVD >gi|316915059|gb|ADCN01000050.1| GENE 4 4227 - 5705 1343 492 aa, chain + ## HITS:1 COG:Cgl0343_1 KEGG:ns NR:ns ## COG: Cgl0343_1 COG3944 # Protein_GI_number: 19551593 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Corynebacterium glutamicum # 24 241 12 222 232 140 34.0 6e-33 MDEAEQVQDGNGVTILDLFNAVRKHVITAVVTLVIVMVAICAYTFTRTPQYTATSELLAT YRSSAAASGASSNASELSSGANYINSQIQTYPQLVKTESVLQPVIDDLGLDTTVKELAEG VTASNPDGTMLVDISVNDPDPKQASSIANSVAENLRKQVTSTIYNDEGDKIISPVNLTVV QQAYAPASPSSPNVKLNLAAGLAVGVILGIVVAFIKDLLDTRVRRDSDVTAVIDAPVLGS LSRNEAYAGTSPVIISRPASREAEEIRRLRTNVMFVLPDEPLSNVIVVTSTGPSEGKTTL SVNLATAFAENGSKVLLIDADVRNPSVSKALGIEGAVGLTHLITNRVSSHDAIQRYWKPN FHVLPAGKQTMNPSILLNSRAMKALVEQVSGAYDYVIIDTAPMQVANDAAVFAKEGPELL LVAGLGVTEKKLLRQTGHELSTLSIDPVGLAMNYGETEKPQKGGYYYYGDESDDNGKKRQ IQHKKSEKTKKD >gi|316915059|gb|ADCN01000050.1| GENE 5 5710 - 6864 1125 384 aa, chain + ## HITS:1 COG:alr3058 KEGG:ns NR:ns ## COG: alr3058 COG0438 # Protein_GI_number: 17230550 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 380 13 382 408 225 36.0 9e-59 MRIAFIGHKRIPSREGGIEIVVDELATRMVARGEQVVVYNRKGHNVAGEEFDNQSSTSDK PYMYRGVKVIPVTTIDAKGLAALTSSFFATLKAIKARPDVIHYHAEGPCVPLRLAHWAGI RTVATIHGLDWQRAKWGRFASMYLKLGERTAAKCADEVIVLSRGVQQYFKDTYGRETRFI PNGIAPVESVSPDVIADKWSLEKDSYILFLGRIVPEKGVHYLIEAFKRLDTDKKLVIAGG ASDSAEYYESIKQAATGDQRIILTGFIEGRELEELYSNAYIYVLPSDLEGMPMSLLEALA YGCCCLTSNIAECADVLCDESGMMHGVTFRHGDVNDLADKLGELLVDVGKVRKIKTGAAG YITGRYSWDKVVQATLKLYRGADK >gi|316915059|gb|ADCN01000050.1| GENE 6 6861 - 8204 695 447 aa, chain + ## HITS:1 COG:SMb21503 KEGG:ns NR:ns ## COG: SMb21503 COG0438 # Protein_GI_number: 16265081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 2 410 5 383 447 251 37.0 3e-66 MRILLVNKYFYRKGGAETYFFALAEGLKALGHEVAFFSMQHPNNEPSYWSKYFVSEKDYV GKISAFKKVKEAATLVYSFEAKRKFEALLEEFQPDIIHINNVHRQLTLSILDAPYLKKHR VPVVYTAHDYILLCPAYTMVDGSGKVCDDCLDCHFFHAVKKTCVKGSKAKSGLAFLEAEF LKNHHSYDKIDKIIAPSEFMKHKLDEGGYAGRTVAMQNFLTTSQMDMAHKVANTNKFNTV EPYFLFFGRLSKEKGILTLVRAFLRAAGLMNSGVAGSKLLPANWTLHIVGDGPERQAIEN LIKSAGPEAERRIKLLGYKTGEDLQREVGNARFSVLCSEWRENMPYSGLESLAAQTPIIG ANIGGIPELVVEGKTGFRFESGQLDDLANHLLQASALNGDEYAVMQQECGDYINRRAQQS LYIRSLGELYMRCLQIPTQQRDVEEEK >gi|316915059|gb|ADCN01000050.1| GENE 7 8201 - 9265 442 354 aa, chain + ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 12 348 3 333 343 363 53.0 1e-100 MKNTIDLHNAAVLVTGAAGFIGSNLAKQLLDSIEGIHVIGFDNVNDYYDVRLKEYRLNQL SHYEGFTFIKADLADKDAVNDVFEQYRPTVVVNLAAQAGVRYSITHPDAYIQSNLIGFYN ILEACRHHPVDHLVYASSSSVYGSNKKVPYSTDDKVDNPVSLYAATKKSDELLAHAYSKL YDIPSTGLRFFTVYGPAGRPDMAYFGFTNKLRAGETIKIFNYGNCRRDFTYVDDIVEGIL RVMQGAPSKQTGEDGLPVPPYAVYNIGNGHPENLLEFVTILQEELLRAKVLPADYDFESH KELVPMQPGDVPVTYADTAALERDFGYKPSTPLCEGLRRFAEWYKTFYLDDSDK >gi|316915059|gb|ADCN01000050.1| GENE 8 9326 - 10588 1619 420 aa, chain + ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 11 420 1 388 388 490 61.0 1e-138 MKKEMKDFDSLKIAVAGTGYVGLSLATLLAQHHQVTAVDIVPAKVDMINARKSPIQDDYI EKYFAEKELDLTATLDGESAYRDADFVIIATPTNYDSTKNFFDTSAVEAVINLVMKVNPA AIMVIKSTIPVGYTKSIREKTGSRNIIFSPEFLRESKALYDNLYPSRIVVGTDPEDEHLV EAAKTFAKLLQQGAIEENIHTLLMGFTEAEAVKLFANTYLALRVSYFNELDTYAESKGLN TREIIDGVCLDPRIGTHYNNPSFGYGGYCLPKDTKQLLANYQDVPENLIQAIVESNATRK DFIADRVLELAGAYGPNSEWDASKEHETVVGVYRLTMKSNSDNFRQSSIQGVMKRIKAKG ATVIIYEPTLENGSTFFGSEVVNDLDEFKKRSHSIVANRYDSCLDDVKDKVYTRDLFRRD >gi|316915059|gb|ADCN01000050.1| GENE 9 10626 - 11690 248 354 aa, chain + ## HITS:1 COG:SMb21250 KEGG:ns NR:ns ## COG: SMb21250 COG0438 # Protein_GI_number: 16264502 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 2 347 48 400 427 140 29.0 3e-33 MGESICFVMPTMDGGGAERVVSILSGEFARSGCDVTLFLTNSTHTAYALDKRVHVDTSCA ESNPNFLDQIKAIRAKMRAMPNTVFISFMDNQNLFTLIAGIGMRNRIIISQRNDPHRAFG KRRLVAAIHPWLYALADCVVFQTQDALEYYPKYAAGKYRVILNPLNDSMLPRYEGERSKR VVTVCRLNDQKNLPLAIDAFAEFRTRFRDYTFEIYGEGALENDLKRYAVSRGVGDSVHFC GFRKDVHACILDAAIFVISSDFEGLSNSMIEAIALGIPTIATDCPIGGARMVIDNGVNGY LVPVRNKERMVTAMCSIAGDTGVQERFSKAGVRLRERLSVDSISKQWLSAIKEK >gi|316915059|gb|ADCN01000050.1| GENE 10 11718 - 12548 549 276 aa, chain + ## HITS:1 COG:no KEGG:BAD_1506 NR:ns ## KEGG: BAD_1506 # Name: not_defined # Def: nucleoside-diphosphate-sugar epimerases-like # Organism: B.adolescentis # Pathway: not_defined # 2 272 10 281 283 317 55.0 3e-85 MKILVTGANGYLGRGVVDELLKRGNEVIATDFACDHVNSAAHCVPGDIFSIEDPYTYFGE PDVVLHLAWRDGFVHNSNAHFEDLPKHVAFLKKLCESGIQQVACMGSMHEIGFHEGSINA HTPCWPMSMYGIAKDALRNALQTIALQNKVKFQWLRGYYIVSDTQYGSSIFSKIVAAEIE GKKEFPFTTGQNQYDFLDYPDFCHQVAAAVNQDEVLGIINICSGKPEKLADRVERFIAEN GFSIKLKYGAFPDRPYDSKAVWGDASKITRILDTEH >gi|316915059|gb|ADCN01000050.1| GENE 11 12967 - 13092 116 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAPGAFVNRDVPSHSVVIGNPCIIKHKDHATEGYINHKSQ >gi|316915059|gb|ADCN01000050.1| GENE 12 13257 - 14138 179 293 aa, chain + ## HITS:1 COG:no KEGG:KPN_02506 NR:ns ## KEGG: KPN_02506 # Name: not_defined # Def: glycosyltransferase # Organism: K.pneumoniae # Pathway: not_defined # 41 284 38 284 293 139 32.0 1e-31 MCRNGYAEPPNARRRLIRKHETLLKYFEKRYGDFASGYRYKVNLPAVPEELKGCIWLCWW QGLDHAPRIVQRCVESIREYAGDRRVIVITEDNYRDYVTFPDWMMRKYHEGTIARTHLSD LLRLSLLAQYGGLWLDATFYCAGDIEDCFGQPLFSIKRPEYLHASVAQGYFANYSFGCDA DHRWIFAVIRDFLLEYWRTNDFMVDYLFLDYLIVLVQRHCTAVKEAFAAITPNNPQCDDL FKCLGDVFNERHWESLIADTSLFKLTWKQEFPTEINGVETYYGRLLNGNLRRN >gi|316915059|gb|ADCN01000050.1| GENE 13 14157 - 15500 345 447 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|224024002|ref|ZP_03642368.1| ## NR: gi|224024002|ref|ZP_03642368.1| hypothetical protein BACCOPRO_00719 [Bacteroides coprophilus DSM 18228] # 8 330 3 317 322 79 22.0 7e-13 MIRITKTKTLQYAWLYLMLLIPGSCAMSRYLNTTLVYGVIIAIYALLALLSAKYRNVYVL SFCLLLALATIVIRLKTGGVGPLSFLSNAAMLVVTYIAMTIDRRMFLTRFVRIVCFFGII SVLFWAAFCINPSLVNAWPATSFWTQNLGTGQWATVLHGKGLWLYSYLEIHATRNCGFYT EPGVYQIVLNAVLFVLLFWKKKLYFDNEKQYRTATVIVLLTLITCQSTTGYLSMMVILLC FFFMRGRERGIRTLKQKLAVLVVAITAVLITDYLLRGEESLLYVQVLNKLFGGGIGGGVN LEDSTGQYRWITVMASLKALSMDPFGIGFDAFYAIRDSFDPAAVAASIATYAAVYGMIFW LTMMIMIFYPMIRREPKKILIAVFAFMFINSTVSETYLFYPGLMMFPIYLSSYFTHKQSS VVGHAIATCNPRHSLMVSNLMNAKEVM >gi|316915059|gb|ADCN01000050.1| GENE 14 15500 - 16432 702 310 aa, chain + ## HITS:1 COG:no KEGG:LLKF_1315 NR:ns ## KEGG: LLKF_1315 # Name: ymhC # Def: hypothetical protein # Organism: L.lactis_KF147 # Pathway: not_defined # 93 308 74 281 300 98 31.0 4e-19 MERTLLLVPSGSFYYFNSMKLPDVVVFPVFREVHGASEMVWKAMRKLRLAASSLFYTDWY KDLQSFSKIIVFDFTVWLDPALLRNINRHKNPDAKCYLYSWNIVRDKQVVLGHLTACRKY GFSYYSYDENDCKQYGFRFNTIMYDENLRLPERALTSDILFLGFLKDRKAKMLALHQIIS DAGMKPEFVIVENGNQHEDLPFTIRHSYINYADYLDMVSQSKAILDITQQGQNGFSMRVM ESIFLNKKLVSTNMALLSANFYDPNNILVIDLQNPDEEELTVFLRSEFHPYSQETRHYYS VGSWINRFQQ >gi|316915059|gb|ADCN01000050.1| GENE 15 16499 - 17893 640 464 aa, chain + ## HITS:1 COG:MA4461 KEGG:ns NR:ns ## COG: MA4461 COG2244 # Protein_GI_number: 20093247 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Methanosarcina acetivorans str.C2A # 208 400 216 411 490 63 24.0 9e-10 MKSAVAYTFASLFSKGLAFVTVPIFTRIMSTSEMGTVNLYNSWQSILTVVATLSLTYGGY MVALKEYEHERDRYESSVLTLTTFTSIVFFAVYSVAPNFWSRILGLDKSLLLLMLVGFLL LPATEFWLARQRYEYKYKAATLVTIGSAIVASALSIVAVLYMRGSGKAAEGRLFANYAVL YAVALVLWVYIMVRGRKFISMRYWKFSLALSVPLIANQFATQILNNSGRVMIGWFVDNSA VGIYGTLSSVSTVSAIVWSAINSSFIPFLYRNIDDSEGKKRVRSLASILLLTYAAVCVLM TFLAPEVVKIIATDEYMAAIYIMPLISAAIFQNAISNMYANVLLYHKKSSYIMIASICGA VLNIVLNAVLIPLFGYQAAAYSMLIAFVFLSYVQMRVSKKLHFTITGTKETVYDDKVIIG IQWLVIVLSAIAIPLYHFTIIRYIAAFVLMVASLFLYKKSKISV >gi|316915059|gb|ADCN01000050.1| GENE 16 17911 - 18420 275 169 aa, chain + ## HITS:1 COG:all1011 KEGG:ns NR:ns ## COG: all1011 COG0110 # Protein_GI_number: 17228506 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Nostoc sp. PCC 7120 # 45 139 102 192 192 77 45.0 2e-14 MFEKLMNHFRNAEKNAAHYRKLGLKLGGGFEILNGWDFGSEPWLIEIGDNVRITSGVRFV THDGGVWVLRHKYPELSDIDLFGKIRIGNNVHIGFNAIIMPGVTIGDNCIIGCGTIVTHD IPANSIVVGVPGRVIESVGEYAAKHDDDFMHTKKMATDEKKAFVLGHLR >gi|316915059|gb|ADCN01000050.1| GENE 17 18500 - 19651 821 383 aa, chain - ## HITS:1 COG:SMb20245 KEGG:ns NR:ns ## COG: SMb20245 COG0451 # Protein_GI_number: 16263983 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 4 357 3 345 368 222 37.0 1e-57 MTAKILVTGGAGFIGSEIVKQLSAHDEYEIRVLDALTKQIHGNNPEKSYLFQSIKDCCDF IRGDVRDFTTVQKALEGVDVVLHLAAETGTGQSMYMINQYNEVNVMGLSNIFQALSLKGE SNTIRKVILSSSRSVYGEGEYQCPNCGVVYPRGRKTKDMMQGDFTMHCDKCNTALTLMPT TEDSKTTPNSLYAFTKLSQEMMIQTMCPAMDIDYTIFRFQNVYGAGQSLKNPYTGILSIF SSLLLDNKDINIFEDGKESRDFIHVKDVASAVIKSINTAASNGEIINLGSGIGTSVIEIA ETLKRIYGSTSNLNVTGDFRIGDIAHNVADTQKARKLLDFTPSISLQEGLTEFCEWVLGQ ETDNSRYEQSLTEMERSGMFIRK >gi|316915059|gb|ADCN01000050.1| GENE 18 19919 - 20263 197 114 aa, chain - ## HITS:1 COG:BH0335 KEGG:ns NR:ns ## COG: BH0335 COG2801 # Protein_GI_number: 15612898 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 4 107 153 256 261 95 40.0 2e-20 MLAAFAALRFPLDEIEVFHTDRGGGFAGERIERMLDVFGVTRSLSRPGNPYDNAVVESTN RLVRKELIHRNVYTNVEQPRSDVNRYVWWYNHQRLHLTLGYLSPVEFTQQGKTL >gi|316915059|gb|ADCN01000050.1| GENE 19 20427 - 21188 636 253 aa, chain - ## HITS:1 COG:MA1049 KEGG:ns NR:ns ## COG: MA1049 COG1484 # Protein_GI_number: 20089920 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Methanosarcina acetivorans str.C2A # 1 239 1 244 257 157 35.0 1e-38 MNTKTDEGLYEKARKLFISKASIDEFAGWATPRQVDAVHRLLDTELANRERAKHDRLLRR ARFPVVKGLDGYDFTNVRLPDGYMLDELLGLGFIPRAQDLVFYGKTGRGKTHLAIGLGMK AIDMGLGVRFHQTAELVLQLGKAKRDGTLETMLRDIGRADLIILDEFGYVPFDIDGARLL YRIIAGSYERRSIIFTTNIEFSKWGTVFADDKLAAAIIDRIVHHGRLLEFTGQSRRVSEA LMFGRNTSAQPEK >gi|316915059|gb|ADCN01000050.1| GENE 20 21185 - 22669 947 494 aa, chain - ## HITS:1 COG:BH3998 KEGG:ns NR:ns ## COG: BH3998 COG4584 # Protein_GI_number: 15616560 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 438 1 438 499 237 33.0 5e-62 MPQVQSIRRLRRNGESVASIARKTHVSEPTVRKYLAKEDLSAVPSVRKPRASVIDPYLPV IEQWLAEDRANWRKQRHTATRIWERLRDEHGAEVSLSTVTRAVARLRREFAAERDEAFMD LVWHPGEAQADFGEVDVLLRGVVQRMHHFVLDFPYSNVGLVQLMPGENAECTCLALRNLF EWLGGVPERIVFDNAAGVGHKGYGEREPRLTHLFQAFQAHYGFDCSFCNPYSGHEKGAVE SKVGMVRRKLFVPRPSVWSLENFSAGLPDRCLELATKPHCRKDTEERGLFSEDRAALLPL PGKRFDVVTWRHMKADRYGVVTLEGRHRYSADRANAGRGVIVGLRALEVEVLDSSGKHLA THPRAYGQASTNSEDPSMQLALLCNKPASWPNSRVRDALPDPLREWLDRQDRQTRNEAPR TLKRVDRESGWANAVEAMLSILESTGGADRAGVTLLAARLAEGVAGIEYDDDRPDLSEYD IAFTADAGVQEGGR >gi|316915059|gb|ADCN01000050.1| GENE 21 22668 - 22757 65 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIIILSGPFWRRYKHHPVKTIPWSACSA Prediction of potential genes in microbial genomes Time: Fri May 13 13:33:50 2011 Seq name: gi|316915048|gb|ADCN01000051.1| Bifidobacterium sp. 12_1_47BFAA cont1.51, whole genome shotgun sequence Length of sequence - 21466 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 46 - 453 462 ## COG2801 Transposase and inactivated derivatives + Term 495 - 526 -1.0 - Term 603 - 646 1.3 2 2 Op 1 . - CDS 672 - 10190 14387 ## COG4982 3-oxoacyl-[acyl-carrier protein] reductase 3 2 Op 2 7/0.000 - CDS 10229 - 11851 2439 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 4 2 Op 3 . - CDS 11844 - 13808 2696 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit 5 3 Tu 1 . + CDS 14321 - 14920 915 ## COG1268 Uncharacterized conserved protein + Term 14971 - 15010 8.0 6 4 Tu 1 . - CDS 14952 - 15854 1009 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 15922 - 15981 2.2 + Prom 15905 - 15964 1.6 7 5 Op 1 . + CDS 16090 - 18114 1647 ## BL1532 hypothetical protein 8 5 Op 2 . + CDS 18120 - 18935 870 ## COG2508 Regulator of polyketide synthase expression - Term 19001 - 19041 3.0 9 6 Op 1 . - CDS 19042 - 19794 603 ## COG1414 Transcriptional regulator 10 6 Op 2 . - CDS 19837 - 20670 277 ## COG1414 Transcriptional regulator - 5S_RRNA 20949 - 21066 100.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Predicted protein(s) >gi|316915048|gb|ADCN01000051.1| GENE 1 46 - 453 462 135 aa, chain + ## HITS:1 COG:HI1721 KEGG:ns NR:ns ## COG: HI1721 COG2801 # Protein_GI_number: 16273607 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 3 133 86 215 216 117 45.0 6e-27 MGSKEIVAWDVSRHPDLAQQQRLLAMLEEKLPEGADPILHSDMGWQYQHDWWRNRLGELG IRQSMSRKGNCIDNAATEQVFGHLKDEFYTGREFASYEEFKSELDAYIIHWNTRRRQIRL EGHTPEEFRNMSLTA >gi|316915048|gb|ADCN01000051.1| GENE 2 672 - 10190 14387 3172 aa, chain - ## HITS:1 COG:Cgl2444_5 KEGG:ns NR:ns ## COG: Cgl2444_5 COG4982 # Protein_GI_number: 19553694 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier protein] reductase # Organism: Corynebacterium glutamicum # 1836 2671 51 843 843 668 48.0 0 MTTFFLNRLATEPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAAGRLLTPVAADL LATTGRPVDLFGFAPNPARLGAAADATASVEGVALTQLGALLDLEHLGYSVAQAKPLAVL GHSQGVLAVHMTRAIEAAGSIEAAGTTLDEILAVAALIGAAGTRRVRELGLNPKYGEASP MLSVKGATRAQVEALVARVNNARGPISIAVTNSDNHHVLSGYPEDLAAFALEAEREHQHQ AKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMTDAVEQTVAWAGACGFDQKRTRALAEEV LLNHVDWNARVKALFDDADPSKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLAERST LSMLESEPERTQNWKAFAPRVINTPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAA AANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIV PKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAV APTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISG QWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQLLVKTPGIPADAKSDDVFAPQAAH WVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELYSRRKEIIEALNKT AKPYFGDLASMTYLEWAQRFAELAFPWVDPTYADRFQHLLQRIEARVNDTDSGEFTSKLF VADGVSVEEAAAAGLLNHDDILADPAPALEKLALAYPQTAELKVVPADVAWFPVLVREYP KPMPFVPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTIDEPIADILGR FETAAIKRVQDEQQAADAAENDDFAALGEATSAEDFIRKSPNISWVGHITDNPAYGTALG DQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGAEPGRVPVVD RERLIPDVYAMLAATAGIGNTAITGDKLTEMPQLDGKTSDERPFATATAAYTLSANLGFD HEAATGAALPTTLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIE LEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGR VYSDALPADAPEFGDAEHEEIAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGA RISGLAAPLVHGMWLSATAQHAVQALDEKDAHYEIAGWTYNMYGMVQLDDTVEISVERVG KVCHGGMTLEVTCRIDGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDV WERADKLTRSKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTA RLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRS NYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKA DSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYI PNLVATPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYADDDQKLGRLLLTELLSWQF ASPVRWIETQALLFGQREQGGLGVEEYVEVGLGNAPTLANLGAKTLHLPEFAGNDTVVYN VGRDEGRVYMTDTDSLVPDDEPEEAAASAPVETAPAGGSAVAELGSGAAPANAVTEAAQT TDGSVAGQSTGLSDSSRGLQSGQAAAGAPSGAAVADLPFKASDAIGVLMAYSAKVRIDQI GSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGA VLSEALRDRLRSLFGAAGVKQQYIRDRVTNVWQLGEGWVASVLATLLLDTREGASSRGGD LAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKV TGSNGVLAATARFVLNELGVAAPAPEESEDENAAVVAAVEAELGSDWPKQVAPRFDANKA ILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFANESESEELKAAFQKA GSEALEQVASNKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKA WAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTTILKPAWEPTLF FPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADTNVQHKLHVVLPGSPNR GVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMVGNDPLVAVVE RHGIRTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAE KEAAAALSQETDGSVAGKSTGLSDSSRGQQIKALPTPIVTKQAPVDLNDWTNVTAKPEDE IVIVSVGELGPWGSGRTRAQAELGIHSDGTVDLSAGAVLELAWNMGLLTWADSPKPGWYD TDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGNDYKDGADEEEAEVFLDHDVTFSVPTR EVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRW GIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRK LYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKI ALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLES QGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGLGGKDSKLVH DLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHA KGGACIFQVNGLTQLFKSGVIPANAALDCVDPKLQRDDHMVWVRKPLRIGGGEDEFGRET AGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRH LEEGMMGRAALYEPIDNRRFREDHRGYDHHEVEKAMLLNPDARLGADGYYEA >gi|316915048|gb|ADCN01000051.1| GENE 3 10229 - 11851 2439 540 aa, chain - ## HITS:1 COG:TM0716 KEGG:ns NR:ns ## COG: TM0716 COG4799 # Protein_GI_number: 15643479 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Thermotoga maritima # 39 540 16 515 515 488 50.0 1e-137 MTDIMDSQAVKAAAAASAANAAQPSAHQPLRTAVVKAAELARAAEERARDKQHAKGKKTA RERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLG TAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLS LILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVS GVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAVTRAERETAKRLATIVPTNERQ PYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSE KVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLR KAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRA KYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRVKRTTKHHGNQPL >gi|316915048|gb|ADCN01000051.1| GENE 4 11844 - 13808 2696 654 aa, chain - ## HITS:1 COG:Cgl0680 KEGG:ns NR:ns ## COG: Cgl0680 COG4770 # Protein_GI_number: 19551930 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Corynebacterium glutamicum # 5 610 8 590 591 437 42.0 1e-122 MASIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYK DTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKI TARRVALRAKVPPVPGLSEPVTDVRMLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEEL RRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLV EEAPAPFLSEEIISTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTV SEEVSGLDLVREQLNIAAGGELTRAPELRGHSFELRITSEDPATNLTPGSGTLEKIQWPA GPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLF KEIFRNDDFTAEHGHPFAVSTKWLERTYLNRTPASAASGQPASLAAAPGAAAPAAPDKSK SETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASSAAAANDGA KSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADG VEAGDTLVTLDVNAGKAKAAAAAPGSLPQAAASTAPSSEGADKATDAKKEGGND >gi|316915048|gb|ADCN01000051.1| GENE 5 14321 - 14920 915 199 aa, chain + ## HITS:1 COG:TM0799 KEGG:ns NR:ns ## COG: TM0799 COG1268 # Protein_GI_number: 15643562 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 18 197 2 165 169 73 38.0 3e-13 MQTSHTTASAAATTSLARRIVAASWKPVLFAVLMWLSAAAGEIPIPGTPVPITLQTFVVM LAGLMLPWRQAGAAVATYLAAGAVGLPVFAGGTSTLALVGPSAGFLFGFLPGVVVIALLR GKSDTSSFAAAARTAGRYLLAALVGGVVVVYAFGFVIQSALTGAPLAAVALASMGFVVGD AIKAVVASLAAAGLSKLGR >gi|316915048|gb|ADCN01000051.1| GENE 6 14952 - 15854 1009 300 aa, chain - ## HITS:1 COG:Cgl0689 KEGG:ns NR:ns ## COG: Cgl0689 COG0340 # Protein_GI_number: 19551939 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Corynebacterium glutamicum # 27 297 36 263 269 72 29.0 1e-12 MIALKAATPQLPRTTAVADHVVAVDETDSTNALAVQMIGDGSLTLPDHQDGELAVAVVAA DRQTAGRGRNGHKWVSQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMI EEYGAAPNQPDCSLELKWPNDVFCHGLKLGGLLSELVIPPSSGTGTDADADDDVVIVFGV GLNLALGACRLPTPQSTSLQLHVSGLPSFGEMRDAVAERQVEGFRERLVKFIADPKGQAE SLREEVKAVCWARGRQVEAHFTDGTTLTGEAIGLNEDASLILRTQDGTDHTVRTADVGVL >gi|316915048|gb|ADCN01000051.1| GENE 7 16090 - 18114 1647 674 aa, chain + ## HITS:1 COG:no KEGG:BL1532 NR:ns ## KEGG: BL1532 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 674 8 681 681 1289 100.0 0 MTSPATAKLAAVSSRQSHPHLARAGAAARWTLAVLAGLWLALCTAVGPLYWDEENGTLAH WNWANTAIFVVSFLIYLGIITLMVRFAAGQRILPRAIGERLRQHQRNSETSRPAADQQAS QPAKTRRTVRAIVTSTVTVLDRWITRGTNRFWKLMLVFFVGWLWVPTTLLAAFGADLRSQ IREFSWAWNQWTGLKQPYIGFFSFVPMDIYPTAHYMWPSDPTYLTDQHNVVLTVFYGAMV TFARHLTGSNDAGIVTLAALQTLFAVFCCAAAANRFLNRPWIGKTATDSAAPPQAGGLAR FLILLFFMVCPLAVFSTISITKSPLFAFSFVWWFSVWYELVQTWHPAGTRKHPQTPAIAT PVHLPRHSFIAFILATSVMLISAKYAWYIIALQIVLALIADRKRWATYVVALLIPTVLIH GGISFAISSGAIIGGDPIESRGVQLQMIARVAQRNPDGISDEAKKNLAPVFNLDQMADAY SQQDADPVKSSGIQAKKVSYKWRTVTPEDMTNFNKAWFEIVKDNPIIALDALLAKCFGYF NVNDQPYVSMDYYVTSDYVQKNSTWIKDYNHDWREHIAGFTRVWGGIPVLGWPTHGNFYV VMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWR ESLAERQRQSATLH >gi|316915048|gb|ADCN01000051.1| GENE 8 18120 - 18935 870 271 aa, chain + ## HITS:1 COG:ML1652 KEGG:ns NR:ns ## COG: ML1652 COG2508 # Protein_GI_number: 15827870 # Func_class: T Signal transduction mechanisms; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Regulator of polyketide synthase expression # Organism: Mycobacterium leprae # 68 268 220 408 414 93 35.0 3e-19 MSDFLELLAADVADSSAPGIAATNRVRTVLFECLFNHLADERVESLFTILGFEHDFDCYT IAGYPARSAARTAKEIEKIVADFGGMCLTAKRPIGNSTAVVALIRPVGAATPEIICNTIA PSFAADRPIALGPQRTGADGAMRSIQATLYCLQAAPALAATVQPLPRPLRTDDALPERAL IGDADARDELVRVVYGSLTAAGPDDPTLLTVSTFLKFGGSLETTAKELNVHPNTIRYRLK RAAESTGWDATDPREAYVLITAIALGRVAEA >gi|316915048|gb|ADCN01000051.1| GENE 9 19042 - 19794 603 250 aa, chain - ## HITS:1 COG:Cgl2999 KEGG:ns NR:ns ## COG: Cgl2999 COG1414 # Protein_GI_number: 19554249 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 6 250 222 470 494 114 34.0 1e-25 MAEDKREPTRALDKASRVVDALAAENGLSPADIADACDIPRSSVYRVLDGLVDVGWAVTD TDGNYSLSLDWLRLADAARTSRTEWQPAIAVMHAITAQTGMTSFLSVVSGTELVCVECAQ GHAIDSLILRPGRVLPLHAGAAGRVALAYFEDADVARYLAGAPFPAYNENTLVSVEQLRE DIRLTRERGYALSDEDVTLGVGAVGVPIVDNESGRVIASLSAGGFVDEVLATQESLAALL HDGVHEIQAA >gi|316915048|gb|ADCN01000051.1| GENE 10 19837 - 20670 277 277 aa, chain - ## HITS:1 COG:Cgl2999 KEGG:ns NR:ns ## COG: Cgl2999 COG1414 # Protein_GI_number: 19554249 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Corynebacterium glutamicum # 4 276 218 481 494 103 28.0 4e-22 MVAPSRDDRSVDALVKSKAVLDVLAELGPSTAKTISERTGEPVSSTYRLLDNLAAVGWAE RGINRGEYRLGIDCVRIGGQIESRLDIQQIARRTFRAHRGQFGIWGLFVRRRLRTVCIET RTRETLQSYAQLVGNSLPLSMSAPSHVLTAWLPPARYEQLLEHYAYNNELGGTFSTMRAT AMGQARHIRECGFTYDVGQTMAGSVTISVPVFNHAGEIQAAIALSSLSRSLEPELACLVD GKPATASAQDMVQLVQTAGREVSRGLGYSGDYLGLNS Prediction of potential genes in microbial genomes Time: Fri May 13 13:34:05 2011 Seq name: gi|316915032|gb|ADCN01000052.1| Bifidobacterium sp. 12_1_47BFAA cont1.52, whole genome shotgun sequence Length of sequence - 21360 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 11, operones - 6 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 238 294 ## BLD_0058 IS30 family transposase 2 2 Op 1 . + CDS 38 - 445 65 ## gi|62860892|gb|AAY16485.1| site-specific recombinase 3 2 Op 2 49/0.000 + CDS 497 - 1627 267 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 4 2 Op 3 13/0.000 + CDS 1629 - 2798 1855 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 5 2 Op 4 . + CDS 2802 - 4511 803 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Term 4527 - 4560 4.5 - Term 4343 - 4386 1.1 6 3 Op 1 . - CDS 4561 - 5082 580 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 5094 - 5125 4.1 7 3 Op 2 . - CDS 5131 - 6726 2439 ## COG0006 Xaa-Pro aminopeptidase 8 4 Tu 1 . - CDS 7007 - 7618 193 ## BLJ_1263 hypothetical protein 9 5 Tu 1 . - CDS 8296 - 8514 66 ## gi|239621190|ref|ZP_04664221.1| predicted protein - Prom 8634 - 8693 1.7 10 6 Op 1 . + CDS 9092 - 10717 2191 ## COG0285 Folylpolyglutamate synthase 11 6 Op 2 . + CDS 10778 - 14455 3982 ## COG1196 Chromosome segregation ATPases + Term 14498 - 14539 6.2 - Term 14354 - 14389 -0.9 12 7 Tu 1 . - CDS 14574 - 15569 1266 ## BLD_0220 hypothetical protein 13 8 Tu 1 . - CDS 15691 - 17244 2299 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 17271 - 17330 2.0 + Prom 17211 - 17270 2.4 14 9 Op 1 . + CDS 17383 - 18171 679 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 15 9 Op 2 . + CDS 18171 - 18491 202 ## BLD_0223 hypothetical protein - Term 18491 - 18538 17.0 16 10 Op 1 . - CDS 18564 - 18638 182 ## - Prom 18672 - 18731 7.7 17 10 Op 2 . - CDS 18757 - 19701 1242 ## COG2017 Galactose mutarotase and related enzymes - Prom 19735 - 19794 5.6 - Term 19780 - 19815 7.4 18 11 Op 1 . - CDS 19827 - 20783 1062 ## COG2017 Galactose mutarotase and related enzymes 19 11 Op 2 . - CDS 20880 - 21338 181 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316915032|gb|ADCN01000052.1| GENE 1 1 - 238 294 79 aa, chain - ## HITS:1 COG:no KEGG:BLD_0058 NR:ns ## KEGG: BLD_0058 # Name: not_defined # Def: IS30 family transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 79 29 107 423 151 100.0 8e-36 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQI >gi|316915032|gb|ADCN01000052.1| GENE 2 38 - 445 65 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|62860892|gb|AAY16485.1| ## NR: gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve] # 45 119 3 77 229 99 76.0 5e-20 MEGLGFVHGGTIPVHQGFLVPSRGARPAVAPRLAGAFRDADRVRGLGEVHAFLVQQAHVL GASRLAHQLPRRIFDAVERPTVFPATVFVSVASGHLTLLAVGQVLQRSLEPAHELPSLRG GELSADGRLRGAQLV >gi|316915032|gb|ADCN01000052.1| GENE 3 497 - 1627 267 376 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 103 372 43 310 320 107 28 7e-23 MLYIPITNTKEHRVSDSAIATSSTTPAKAKTKKNRLSGSFFRFVLTRFLLIIPTVFILVT IVFFVMRATGDPISAALGGRLTPAELQQRIHAAGYDRPLIVQYVDYLGGLLHGDLGTTLT DNQPVISILTHYGAATFELAFLALIVALIVGIGLGRLAARKRDRAADAGIRTFAILCYAT PVFFLGLVLKLIFAVWLNILPASGRSDLNSEMQFTRLVSPTGFYIIDAIQLGDMNVLVDV LRHAVLPAVALGLLTAGVFIRLVRTNVISTYNSGYVEAARSRGVSEKRLLNKHAWRPALI PIITVMGMQIALMLAGAVLTETTFEWKGLGFMLSQYLKARDFVAVQGIVILIAIIVAVVN FLVDVIAALIDPRVRY >gi|316915032|gb|ADCN01000052.1| GENE 4 1629 - 2798 1855 389 aa, chain + ## HITS:1 COG:AF1769 KEGG:ns NR:ns ## COG: AF1769 COG1173 # Protein_GI_number: 11499358 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Archaeoglobus fulgidus # 48 322 23 283 286 209 44.0 7e-54 MTTASQDKITVPGDDRLTKLNVSTKTPFWTKIPIIKELRVAVGWQKGMLITGLAITAFFL LVALFAPLIAPYGHAQIKAADGTSFPAQAAPSAEHIWGTTAAGFDVFSRVVWGARTAVIA IVVAVLLSIFAGVLLGLVSGYYGGWVDRILVMIADAIYSFPSLLLAILMAIMISHGQSGL WSGILASGISITVVYIPQYFRTIRAEVIRIKESAYVESARVVGASTWRIMTKHLFKNSTR TLPVILTLNSSEAILTLAGLGFLGFGIEPTAAAEWGYDLNRSVSDVTAGIWWTAVFPGIA IVLIVLGITLVGESLNDLADPRLRARKSAGEVVGSIEDTSVDPNEKPTARNEVIAELDAN VDPPATVTDHDPTIVASEWTGEGKPEGKE >gi|316915032|gb|ADCN01000052.1| GENE 5 2802 - 4511 803 569 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 551 1 528 563 313 34 5e-85 MSENNKNLADIKDLSVSFMTDAGSIKAVEDVNFTIPRKTVVGVVGESGSGKSVTARSIIK LLPETATTSGAVYLSKRDGSDSLDVLSLSGEQLREVRGSEAAMVFQEPNSVLNPVYTIGW QIEEGLRAHGMKDKKELRAKAINILKKVGIPDAETRVDYYPHQFSGGQKQRIVIAMALVL NPGLILADEPTTALDVTVQAEILDLLRLARDEFDASVLIITHNMGVIADIADQVVVMYRG HVVEQGDVEQIFYHPKDDYTKRLLGAVPRIGQKLVVRDREGKPIERKADWREQPIAVEAK NLTITYPGHLMQPDFKAVDGANFTIHRSEVLGLVGESGSGKSTTGRAIAGLQKVSGGSLN VLGIEMNGVKERDFKPKRADIGFVFQDPGSSFNPLMTIAENVAEPLLVHHKYGSVADAKN YVGDLLEMVQLPRAYMNRFPHELSGGQRQRASLARGLALKPSLLIADEPTSALDVSVQAK VLELFKRLQAEIGFACLFITHDLAVVDMLADRIMVMHKGQIVEHGDADQIMQHPENPYTK KLLASLPVPDPREQQQHRAHLHELLAQEA >gi|316915032|gb|ADCN01000052.1| GENE 6 4561 - 5082 580 173 aa, chain - ## HITS:1 COG:Cgl2168 KEGG:ns NR:ns ## COG: Cgl2168 COG0494 # Protein_GI_number: 19553418 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Corynebacterium glutamicum # 1 136 1 143 178 118 44.0 7e-27 MSTPEFVLELRKKIGHDLLWLNGVTGCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPA DTVVREIKEETGIDAIVTDLVAVTSSNKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVG DEESLSVGWFDLDDLPTPLAASTSERLELFHTYIENKKHGDAHALFQFDGQQY >gi|316915032|gb|ADCN01000052.1| GENE 7 5131 - 6726 2439 531 aa, chain - ## HITS:1 COG:PA5224 KEGG:ns NR:ns ## COG: PA5224 COG0006 # Protein_GI_number: 15600417 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Pseudomonas aeruginosa # 61 530 4 443 444 193 30.0 7e-49 MGEVITAKDKEYEAEERATAPGANQSMSDRVNNRSLRPQSAAFKEFMKSGWADDDPEIKP LESSKFTPARLEALGKAFPGERLVIPAGQPKVRNNDCDYMFRPDTTFAYYTGLGSDYEAG AVLVLNPVDPDSPEAAAGKTHTPELFVAPRADNSTEDFFMSAHYGEYWVGPRAGLKEMQA MTGIETHDIAQLADALSKDVGAEAGAVRVRVVSETDPQITSMVESIREANGFADPDKNSA SDDKLHEFAAEARMVKDGYEINEMRKAVDATKHGFDRLLSALPAALDKPRSERILEGAFN AVSRELGNAIGYDSIVASGPHAPILHWMRNTGVVKTGDMLLVDAGVEVDSLYTADITRTF PTNGKFTDFQKRLYQAVLDSQQAGFEAAKPGATYSDIHHACMRVIAERLHDWGLLPVSVE ESLSPQGQQHRRWLACGVAHHLGLDVHDCAQARYESYQGAKITPGMIFTIEPGLYFREDD LLIPPEYRSIGIRIEDDVLMTENGPEWISAGIPKQIDDVEAWMAEQAAQAK >gi|316915032|gb|ADCN01000052.1| GENE 8 7007 - 7618 193 203 aa, chain - ## HITS:1 COG:no KEGG:BLJ_1263 NR:ns ## KEGG: BLJ_1263 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 203 129 331 331 394 98.0 1e-108 MNNPKTHHEASGLSLISPARTLVEAAIDLDFRFALPIFDSALAKGITKEEIAADCVQWRI DYARVFRLLRYANERSENGGESLARGTIIEDRFLTPRIQVTVTDPQTNTEHRVDFVWKLD DGRVIVAEYDGTQKYVDPAMTDNRSIQEVVAKERARDEGLKRAGATEIVHFTYADVIERT PLRVKLIKAGVPQMEASAEQRVP >gi|316915032|gb|ADCN01000052.1| GENE 9 8296 - 8514 66 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|239621190|ref|ZP_04664221.1| ## NR: gi|239621190|ref|ZP_04664221.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 72 37 108 108 137 98.0 3e-31 MSCPGNDSHKRPLHHLLNSQRLIHCYDCSHRRQPSKPWIYAANKLQQIVGPYTTIGLTPT LDSTLRQKPANI >gi|316915032|gb|ADCN01000052.1| GENE 10 9092 - 10717 2191 541 aa, chain + ## HITS:1 COG:ML1471 KEGG:ns NR:ns ## COG: ML1471 COG0285 # Protein_GI_number: 15827773 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Mycobacterium leprae # 12 456 27 480 485 299 41.0 1e-80 MSFEHPNRNNESMRDVELDIMSRPPEHNTTNLDLDRMNLMLDILGHPEQSFRVIHITGTN GKGSTARMAEAICRAYGMRTGLFTSPHLEKINERIAIDGQQLSDDDFIDIWDQTKDLVAL VDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGLWDATNVLNADAAIIGP VDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPILAEAAERNHAMLVRDG YEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALAALAASEVVIPVNGPLD GDLVAEALSSVKIPGRIEQIRTSPTIILDGGHNVNAAEALRKAIEESYDFKQLVGVVAMM RDKQVEEYLGVLEPILSSVVVTENSWRERVMPADELEKIAVDVFGRDRVIKEANLPDAIQ TAVNMVDAEDELGVGYGHGVLICGSFVTAGDARLMLEEHASPTMRQAMAVHQPAVDPDDS DQPADKAEDEAADNLEDSVSPDDFDVFDVLGLGKEQASDAGNAGTGTASADTDTDDSADA R >gi|316915032|gb|ADCN01000052.1| GENE 11 10778 - 14455 3982 1225 aa, chain + ## HITS:1 COG:ML1629 KEGG:ns NR:ns ## COG: ML1629 COG1196 # Protein_GI_number: 15827858 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Mycobacterium leprae # 1 1223 1 1190 1203 598 37.0 1e-170 MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHRKRKERALRK LANTETNLSRLDDLLGEIHRQLGPLGRQARISRRADAIQISVRDAQARLYAEDAQRSMSR RDTVRQELGAVRNQLAVAQRELAQVKVRIEQVEALSSESSPAIAKANQYWHEFSQTRERL NALAQLAEERSRSLAGQIVTNFGEDPGMLVKRAEELESQAAAQTKAVADARIALDKATEE RADDEKKLASVRQTLTELRKTAQERDAQIARLRELIAREESAVQLATSRAKDYASQRDSL TSQRDDAQQQLDALRSEADSIADDDGAALDAARATLAECRERLNERADKQREIQSKIISL KSKADALADTLDSRNASGSLERDTDVASLGRLTDFIHVAEGWEEAVAHALDQYASAIVVP EAGNMLHALERAREDKLGKAVVLTASIAGDPATEPGTESEESSAENAGAAPQSGNALAAL VTANPDAENPAQAEAVVRTVRLLLADVAAAGTADEAQQIVAFGEAMRAVTKNGETFTHGV AAVGGSSISQSDLSLAARRDKALAQVKQLTAQDGGMAEQVAEAKTKRDEAARLVDQESAK RTEARLKAQQAEKSLKSATDRVASFTRQLEQLDRKITETQENCNEHQLKLDDLNRALASA QQSTAEHADFDELDERERTLERELNLTREHEVAAKIAWTEASRKGESLSRQAGLLRDNAK ETAERRARIEALNDRRREQAAHLQGVADDARAVAAMVEHTLHDVAAKRDELQAAASSHDE ELKALRAQRNQIEPKVTDLTGREHALDVNRERLAAESGQLMQKVSDELGLTLEELVSDYG PEQPVPVLDDEGNPVPLDETEAEAETEEGETGGETGTNGDSDRFKTVPYNRQEQKKRLDK ARRDLAALGKINPLATEEFEALEERNKYLNDQRNDVVKSRDDLMQLIKDLDSTMVQVFKS AFDDTAEAFEQMFATLFPGGTGRLRLENPEDMLTTGVLVEASPAGKRVKQLSLLSGGERS LTALALLFAIFTARPSPFYVMDEVEAALDDVNLTRLINAFNELRAHAQLIIITHQQRAMS IADALYGVTMRADGVTAVVSQKLER >gi|316915032|gb|ADCN01000052.1| GENE 12 14574 - 15569 1266 331 aa, chain - ## HITS:1 COG:no KEGG:BLD_0220 NR:ns ## KEGG: BLD_0220 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 331 1 331 331 665 99.0 0 MITLEKVDGATLEAEAEKAGITLPIEQTKVWSGFQADIDGRTPWGDYLIKRDGELVAVIS FIDFETHGYHYLRSMHGPAWVAKPTEAEEREVVDAIVDTVKKADKNIAFLRIDTWFADGT EKVLSTVPYDQTVVIDVTGGDDEILARMKRRGRRDVRKSLRECPAEVADETDKALTDFSE YYDVMVETGQRDGFTPAPMSDYSDMIGALGADHCRVFAARIEDRVVAWSIVTVNGTHAVR YYAGMRNEVMRLHVTDKLLYSECCILGSQGITEYDLMGIGSDFAPSLKGLNEFKCKFTEE ITPVAPARDVPIKKVFYKTLQTVQGVRKALR >gi|316915032|gb|ADCN01000052.1| GENE 13 15691 - 17244 2299 517 aa, chain - ## HITS:1 COG:SP1530 KEGG:ns NR:ns ## COG: SP1530 COG0769 # Protein_GI_number: 15901375 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Streptococcus pneumoniae TIGR4 # 3 512 2 478 481 282 37.0 1e-75 MALTLASAADLLKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTLLCCK GQFKAEYLNGIDEAGLAAYVAETEYSAATATPGLIVNDARKAMSLLSAAFYGYPQNELTV IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQ IIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAHASF HIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIAGRMEQF RDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAA ENRIANFIFTAEDTDTEPIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARAHADR FNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFGL >gi|316915032|gb|ADCN01000052.1| GENE 14 17383 - 18171 679 262 aa, chain + ## HITS:1 COG:Cgl0743 KEGG:ns NR:ns ## COG: Cgl0743 COG1595 # Protein_GI_number: 19551993 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Corynebacterium glutamicum # 15 196 13 192 206 140 43.0 3e-33 MQSGQSAGSGESMAAKRARFEQLAMPAVNALYRQAMRLTNDPDDAQDLVQDTFERGFKAF DSFQPGSNFEAWMTTIERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSDGLKS AEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRA RTQLKRELASYAKERGYVTGSSAGSPSAKLGENVGRIADSGHNGSSEQTVGSNGDTQAAV RHSHATGARTPQQSSKLSGKEI >gi|316915032|gb|ADCN01000052.1| GENE 15 18171 - 18491 202 106 aa, chain + ## HITS:1 COG:no KEGG:BLD_0223 NR:ns ## KEGG: BLD_0223 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 106 1 106 106 189 100.0 3e-47 MNDQPVERTRHISITRTGADGMVSQTEVHITAVHHRSVDTGSASASVQADVHIVTEGDCF DPRTCCDEREQALIAALRAYLRPDVAPECLIARLKATLDHCCGEDK >gi|316915032|gb|ADCN01000052.1| GENE 16 18564 - 18638 182 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGMRGRKRKNRRKKAANHGKRPNA >gi|316915032|gb|ADCN01000052.1| GENE 17 18757 - 19701 1242 314 aa, chain - ## HITS:1 COG:ECs4802 KEGG:ns NR:ns ## COG: ECs4802 COG2017 # Protein_GI_number: 15834056 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli O157:H7 # 7 300 9 286 300 134 30.0 2e-31 MALKPRTGNQYVISSGEWSAVVTELGASLRELKWRGEDLIVPFDPNKVIPCCNGWVLAPY PNRVTNGQYSFDGEDYQMPIDEFDRQSSLHGYAYRYMWELVDLQESHVTLSWRSPDIAGY PFDITITATYALDENGLTETFTVHNNDSVKAPWAFGIHPWLANGKHATGQAITADNEPCR LELHCDTHVTVDEHLLPTGEEPVSGIFDLRDNPTLEGRGFDDAWTDITNRGEDGSTSAVF TRPDGIKVTLTGDKTINSWQVCTGNEIGEKARQAGVAVEPMTAYADAFRTGKDLVVLEPG DDYTTVVTFHAEQI >gi|316915032|gb|ADCN01000052.1| GENE 18 19827 - 20783 1062 318 aa, chain - ## HITS:1 COG:yihR KEGG:ns NR:ns ## COG: yihR COG2017 # Protein_GI_number: 16131719 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 8 301 17 291 308 110 30.0 2e-24 MTSKTPRTGNQYSIHYGDYSAVICELGAKIRRFDYQGKEIFCPFGVNDLTPTCNGYVLAP WPNRIENGEYDFNGKHYCAPVNEYHPAPRNNANHGYAYHYMWKLESLTDSAVTLSLRFPN LDGYPFDVTVTVTYELGDNGMTATVNARNDGDEPAPWALGLHPWLANGKQGATAAERDAD SAACHLQIKAASHVTVNEALIPTGTEPVTGIYDLNDGPTLEGRAFDDAWVDVERAADGTT TTTFTRPDGIEVKIIGDETINAWQCYTATGAPFAEHPYGIAVEPMTAPANAFRTGDHLVT LAPNGDYTTVVRYEVVQK >gi|316915032|gb|ADCN01000052.1| GENE 19 20880 - 21338 181 152 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 128 192 312 317 74 39 6e-13 CMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVD EALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKL LGYKTPNEVWDEEMAKLQSKQADPKPAVALTS Prediction of potential genes in microbial genomes Time: Fri May 13 13:34:38 2011 Seq name: gi|316915014|gb|ADCN01000053.1| Bifidobacterium sp. 12_1_47BFAA cont1.53, whole genome shotgun sequence Length of sequence - 20930 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 10, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 391 305 ## Blon_0449 integrase, catalytic region - Prom 426 - 485 1.5 2 2 Tu 1 . - CDS 555 - 2060 615 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 - Prom 2106 - 2165 3.9 + Prom 2061 - 2120 3.7 3 3 Op 1 . + CDS 2219 - 2875 678 ## COG2813 16S RNA G1207 methylase RsmC 4 3 Op 2 . + CDS 2865 - 7001 4799 ## COG1643 HrpA-like helicases 5 4 Tu 1 . + CDS 7178 - 7969 646 ## BL1304 hypothetical protein + Term 8128 - 8162 -1.0 - Term 7804 - 7831 -0.8 6 5 Tu 1 . - CDS 8016 - 8414 520 ## BL1303 hypothetical protein - Term 8655 - 8696 10.2 7 6 Tu 1 . - CDS 8722 - 10059 1777 ## COG0174 Glutamine synthetase + Prom 10051 - 10110 1.8 8 7 Tu 1 . + CDS 10208 - 11641 1535 ## COG4320 Uncharacterized protein conserved in bacteria + Term 11723 - 11749 -1.0 - Term 11710 - 11736 -1.0 9 8 Op 1 25/0.000 - CDS 11745 - 12470 941 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase - Term 12493 - 12532 6.1 10 8 Op 2 . - CDS 12540 - 13187 793 ## COG0118 Glutamine amidotransferase 11 8 Op 3 . - CDS 13222 - 14016 1039 ## BLD_0155 hypothetical protein 12 8 Op 4 13/0.000 - CDS 14016 - 14615 803 ## COG0131 Imidazoleglycerol-phosphate dehydratase 13 8 Op 5 19/0.000 - CDS 14701 - 15861 1747 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 14 8 Op 6 . - CDS 15858 - 17240 2152 ## COG0141 Histidinol dehydrogenase 15 9 Op 1 . - CDS 17357 - 17650 228 ## COG1254 Acylphosphatases 16 9 Op 2 . - CDS 17663 - 19138 1063 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 19165 - 19224 3.8 + Prom 18999 - 19058 4.2 17 10 Op 1 . + CDS 19249 - 20076 819 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 18 10 Op 2 . + CDS 20102 - 20563 -79 ## - 5S_RRNA 20263 - 20382 100.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. - LSU_RRNA 20551 - 20930 99.0 # AE014295 [D:1910860..1913926] # 23S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Predicted protein(s) >gi|316915014|gb|ADCN01000053.1| GENE 1 1 - 391 305 130 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 130 1 130 358 225 92.0 4e-58 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPD >gi|316915014|gb|ADCN01000053.1| GENE 2 555 - 2060 615 501 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 126 483 56 410 425 241 40 3e-63 MTDNTQYTDINRGNNDVTPEGVLAEQSEVLLDDSQRATGWHEDANQEWEEREARNELKHV AGLGELQDVTEVEYRKVRLERVVLVGVWSSAVTTQAKAEESLRELAALAETAGAVVCDGL LQHRSKPDAATYVGSGKAKEIAGIVAREEADTIIVDDDLPPSQRRALEDAAKVKVVDRTA VILDIFAQHATSREGKAQVELAQLEYMLPRLRGWGGSLSRQAGGRAAGADAGIGSRGPGE TKIEMDRRVIRTRIARLRRQIREMAPAREVKRGSRRRFGLPTVAVVGYTNAGKSSLTNRL TGSAELVENALFATLDTAVRRAKTRDGRAYAYVDTVGFVRRLPTQLVEAFKSTLEEVAEA DVILHVVDGSHPDPFSQVDAVNDVLADIEGTASIPRILVFNKADQADEATRERLAALQPD AFIVSAYTGEGLDELRTAVESLLPVPHVHVNALLPYTAGSLISRVREYGKVDKVEYRDDG IQLEADVDAHLAAQVVEQSID >gi|316915014|gb|ADCN01000053.1| GENE 3 2219 - 2875 678 218 aa, chain + ## HITS:1 COG:BS_ybxB KEGG:ns NR:ns ## COG: BS_ybxB COG2813 # Protein_GI_number: 16077174 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Bacillus subtilis # 1 215 1 199 201 136 36.0 2e-32 MAEQYFSAEPASKDVRRTLNVTLRGHEATAQVSNGVFSGSRVDLGTSVLLKHAPEPPLTG DFLDLGCGWGPIALTLAFESPEANVWAVDVNERAVDLTHANAQANGHTNIHTAQVDESST PLPAENQPAFCETVPSDLTFDVIWSNPPIRVGKEALHTLLMAWLPKLKVGGAAYLVVQKN LGSDSLIPWLDDALGEGFTASKYASSKGFRIIEVRHEI >gi|316915014|gb|ADCN01000053.1| GENE 4 2865 - 7001 4799 1378 aa, chain + ## HITS:1 COG:VC1382 KEGG:ns NR:ns ## COG: VC1382 COG1643 # Protein_GI_number: 15641394 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Vibrio cholerae # 2 988 80 938 1309 822 46.0 0 MKYEYPAELPVSAARDEIASAVKRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH TQPRRIAARTVAERIASEMGVKLGDEVGYQVRFTDESSPGTRLRVVTDGILLAQIQRDPK LTRYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFEHALHE KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFAVGARPGDADYDELASAIAESDSDRP RGRSGASYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH YGPRADDMRRPDAIEIMPLFARLSAADQHKVFESHLHQRIVIATNVAETSLTVPGIRYVV DPGSARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG EVTLTHTGRQLARIPIDVRLGRMVIEAAKTGSPNLLAQVLVVVAFLSLQDPRERPDDKRE DADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICKTEYFSWLRMRQWKDLVS QLRQMCKELKFKVGDPLPASRPGLEIRQLPLNQQAAHSLCCAWDADGIHKSMLAGLLSMM GMQVVREPKASDFAGLTGSARARAMKRAQKQSKNDYQGARGTRFALFPASAVAKKTPSWV MSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP IVQDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDDFVGKNRDILEDAADDASRTRQ LADTVSDEDLFDFYNAVIPNDVTSVADLAKWWKSEHDRQPNLLDFDPAKVERLASSDSVS LDDYPDHWHTTGSDGQPIDLRLSYVYDPADPADGVTVHVPLKALSRITPDQFTWNVPGLL DELILSMIKALPKQLRVQFVPAPDAARAIRDWIDEHYPDLPGSGSQQKPNLPPVDEDGTT VGWPDLAHVFTKAAIATKGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRRH ARGPIKVLGVSKDLKALQRKFAAQAEASARQMVKKQADQAGEQGKLVSQANLLHKAGATT ESRATMLWRGALDALRLPAERISSRWLGTEALMLASAPYKSTKDLVEDLQLATVKRLMPN VDRLSDDEALANAVLDVREVYEDTVYQVAHDVIAVLKAYAEVDKATGGKADLPMLSVLQS IRDHIATLVYPGFIGRTPPDALKSLSRYLRADLSRLNKAKTDKNRDVKWAWQADEARQVV DKALARAKAEPAGPKHEALMKQAEQARWMLEEFYVSLWAQELGTKGPASLNRIKKALA >gi|316915014|gb|ADCN01000053.1| GENE 5 7178 - 7969 646 263 aa, chain + ## HITS:1 COG:no KEGG:BL1304 NR:ns ## KEGG: BL1304 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 263 61 323 323 490 100.0 1e-137 MVLIPTVAVVVVVALVAGLVRFTNWRAQVRAAEAAQLELTRTYDFNPGNIISDGQFFNGS AMSQAEVQSFLDTQGGSLAAMTFDTSNESGEGLCADYTGTKGESAAAIIDQSARACKVSQ KVLLTVMQKEQHLVTAVDPSDYQLMAAMGLNCPDTADCDPAYAGFFRQVYGAAKRYRYYL EHEEQYGYTAHNLNYIQYHPNAACGGAQVYIENKATALLYIYTPYQPNIAALAAGNGTGD SCSSYGNRNFALIYTSWFGSPRS >gi|316915014|gb|ADCN01000053.1| GENE 6 8016 - 8414 520 132 aa, chain - ## HITS:1 COG:no KEGG:BL1303 NR:ns ## KEGG: BL1303 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 132 25 156 156 261 99.0 6e-69 MAVSLPRNSHPAKIGFLRQFRLFFDRRIQLGVADVVFGAAASYVFYTYLSPIMRDEIGVP ERYTSIGLVIYGCACLWSNLYGGKLADKGHGVEPLTHIRPIYCVQAVCLCLLAFASLLAV GATTLLRPYVER >gi|316915014|gb|ADCN01000053.1| GENE 7 8722 - 10059 1777 445 aa, chain - ## HITS:1 COG:MT2280 KEGG:ns NR:ns ## COG: MT2280 COG0174 # Protein_GI_number: 15841714 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Mycobacterium tuberculosis CDC1551 # 1 442 1 444 446 556 60.0 1e-158 MDKQQEFALRTVEERDVRFIRLWFTDVLGTLKSVAIAPAELEAAFEEGLGFDGSAIEGMT RVSEDDMIVQPDPSTFQILPWRGGPQGTARMFCDILTPDGEPSLGDPRHVLKRTLAKAKD KGFTFYAHPEIEFYLFESQDDWSKAPTPIDEGGYFDHVPRSPGMDFRRATVNMLEQMGIS VEYSHHEAGPGQNEIDLRYADALTMADNIMTFRTVVKEISLERGIHASFMPKPLADAPGS GMHTHLSLFEGDSNAFYEAGQEFNMSLTARQFAAGILYHAAEICAVTDQYVNSYKRLWGG NEAPSYICWGHNNRSALLRIPQYKPGKGNSARMEFRALDPVANPYLAYSVLLAAGLDGID KQMQLGEPTSDDVWELTDGERQAMGIQPLPRSLDEALKIMEKSDFVADVLGEHAFGYFLD NKHQEWEEYNQQVTPYELKKYLPKL >gi|316915014|gb|ADCN01000053.1| GENE 8 10208 - 11641 1535 477 aa, chain + ## HITS:1 COG:XF1486 KEGG:ns NR:ns ## COG: XF1486 COG4320 # Protein_GI_number: 15838087 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 75 473 50 447 451 102 25.0 2e-21 MSEDHLTPSANPPVDVTSWTQATDPRDRSRAGIATRTKAPLDAHAIWKVKEGRREAISLL EEQSAIRVPDLIPLRYKRMSASPFTFYRGTVLIMTNDLASTPVTGIPVQCVGDAHIGNFG IFRSPSARLVFDINDFDETAIGPWEWDLKRLAASVEICGRANKIKEKDRRAAVVQCVHTY RTRMKWFSEMDYLDAWYEHLDVEETLDRFETTGSKRSRVLREAAMKALLKDNDAAAAKLC RYESGKLRFKSNPPELVPINQLDDYADLDALQARIDTLFESYRHSLYDDRRWVFDHLRYQ DAARKVVGVGSVGQRAWTSVWIARDIDDPMMIQMKEATYSVLEHYCGASPYATHGERVVQ GQKLIQNTADVLLGWSSFMAEDGRPRDYYVRQLWNGKGSIDIDNLNASGLSDLSRMCAWS LAHAHARTGDSIAIANYMGGTDEFDQAIASFAVSYAEQNDEDYAVFKKLLKSGDLPC >gi|316915014|gb|ADCN01000053.1| GENE 9 11745 - 12470 941 241 aa, chain - ## HITS:1 COG:ML1261 KEGG:ns NR:ns ## COG: ML1261 COG0106 # Protein_GI_number: 15827647 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Mycobacterium leprae # 1 241 2 244 245 265 58.0 5e-71 MSLTLMPAVDVRDGKAVRLRQGESGSETDYGSPFEAARTWVEAGAEWIHLVDLDAAFGTG NNRDQLREIVHELGDRVNIELSGGVRDDASLDAALEAGAARVNIGTAALENPDWTASVIK KYGDRVAVGLDVRGHTLAARGWTREGGDLFETMKFLDSVGCSRYVVTDVAKDGMMSGPNI QLLSEVAERTDAKVTASGGISKLDDLRAIKELAEIGVDSAILGKSLYARAFTLQEALEVA K >gi|316915014|gb|ADCN01000053.1| GENE 10 12540 - 13187 793 215 aa, chain - ## HITS:1 COG:Cgl2044 KEGG:ns NR:ns ## COG: Cgl2044 COG0118 # Protein_GI_number: 19553294 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Corynebacterium glutamicum # 3 212 4 208 211 211 50.0 9e-55 MTTAVVFDYGFGNVRSMVRALANLGVDTTLTSDYRQSLEADGLVVPGVGAFAACMEGLKK VDGDRVIYDRIRAGRPVLGVCVGEQIMFEHGLEHGAHAAGIGLIGGSVNLLDADVVPHMG WDTIEAAPDSVLLNGVENERFYFVHSYAAMEVKPADTSRFDIDLSDSPERVSWCSYGRSR FVAAYEHGPLSVTQFHPEKSGDAGSQLLKNWIATL >gi|316915014|gb|ADCN01000053.1| GENE 11 13222 - 14016 1039 264 aa, chain - ## HITS:1 COG:no KEGG:BLD_0155 NR:ns ## KEGG: BLD_0155 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 264 1 261 261 385 98.0 1e-106 MTDDKFDPDESHFSDEELEAALAGFEKEFADDSVSGDASDTSDADKTADAASAKSDSDAN DDTADKASADSGQPMTDDVTGSVADAVNEAMADVVDPSLGFDNELAGLLGNKAKVALIVT RLASAELLAAFCQLSDISAACIGANQGAVAVLKNLNGDGPEAAAKDLTTVVSGMAVILAV NRADKLEVAMYVQGEAGQSFAPPVLFTSTPRFVEDLMLGIVTLNQLKTQGFEVVDSAGLD HDQAMQILANHTRRGRGGRGSRIE >gi|316915014|gb|ADCN01000053.1| GENE 12 14016 - 14615 803 199 aa, chain - ## HITS:1 COG:Cgl2047 KEGG:ns NR:ns ## COG: Cgl2047 COG0131 # Protein_GI_number: 19553297 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Corynebacterium glutamicum # 3 199 6 202 202 231 60.0 4e-61 MARTAHIVRETSESHIDLELNLDGTGKTDIDTSVPFYNHMMTALGKHSLIDLTIHAHGDT DIDVHHTVEDTAIVFGEALKQALGDKKGIRRFADATVPLDEALAKAVVDISGRPYCVCSG EPEGYEFCMIGGHFTGSLVRHVMESIAFHAGICLHMQVLAGRDPHHIAEAEFKALARALR FAVEIDPRVDGVPSTKGAL >gi|316915014|gb|ADCN01000053.1| GENE 13 14701 - 15861 1747 386 aa, chain - ## HITS:1 COG:Cgl2048 KEGG:ns NR:ns ## COG: Cgl2048 COG0079 # Protein_GI_number: 19553298 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Corynebacterium glutamicum # 6 382 7 364 366 313 46.0 4e-85 MSSIPANLPLRNDLIGEEPYGAPQLDVPVCLNVNENPYAPDPAVCDTIAKRVREIAPTLN RYPDREHIELRQAFSDYLARESGTRLDVDELWGANGSNEIMLQLFQAFGGPGRTALGADP TYSMYPEYARDTFTGWKLAHRNADFTLNVDKVLEAIAEVKPSMVLLTSPNNPTGTPLPME DIERILAACETAEVVGAGEGVHPILVIDEAYVEFRKPGTPSAVSLIKDHPNLAVSRTMSK AFAFAGARVGYLAASKGIIDCVRIVRMPYHLSAVTQAAALAAFEHTDEQLSRVEHLRETR EATAAWLKEQTYKDQPLEVAESGSNFLLFGGHFDKREAIFDELLKRGVLIRVVGPDGWLR VCMGTDEEMETFRNALVEVLRIVEAA >gi|316915014|gb|ADCN01000053.1| GENE 14 15858 - 17240 2152 460 aa, chain - ## HITS:1 COG:Cgl2049 KEGG:ns NR:ns ## COG: Cgl2049 COG0141 # Protein_GI_number: 19553299 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Corynebacterium glutamicum # 1 444 2 437 442 437 54.0 1e-122 MRIIDLRGQNLSRAELLAAMPRAAMGTSEATDLVRPILDDVKERGAAALRDFEEKFDHVR PKNLRVPVEAIKDALTTLDPEVRAAIEESVRRARAVAANQVPKDFYTDLAEGARVAERWI PIQRVGLYVPGGKAVYPSSVIMNAVPAQAAGVESLAIATPPARDNEEGLPNKTILATCAI LGVDEVYAVGGAQAIAMFAYGAKGSEPQDGDILCDPVDKITGPGNIFVATAKSLVSAFVG IDAVAGPTEIGIIADETANPSLLAADLIGQAEHDELAGSVLFTDSTEIADKVQESLKYRV PRTEHAERVHTSLSGTQSAIVLTDGLDQSIDAANAYAAEHLEIQTKDADAVVKRIKNAGA IFRGPYSPVPLGDYMSGSNHVLPTGGTARFAAGLGVHTFMKPVEVIEYDEEGLKALAARI NAFAVSEDLPAHGECVLSRFVKDPYDKATLREQEKEAGLR >gi|316915014|gb|ADCN01000053.1| GENE 15 17357 - 17650 228 97 aa, chain - ## HITS:1 COG:PM0396 KEGG:ns NR:ns ## COG: PM0396 COG1254 # Protein_GI_number: 15602261 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Pasteurella multocida # 6 78 8 80 98 68 50.0 2e-12 MRQSANLVRKHIVVNGLVQGVGFRYFTVTQARRLGVRGWVRNCRDGSVELEAQGSSDAVQ ALVEQLAIGPRWSEVSHVAVHDMPIIDETARAFGVRQ >gi|316915014|gb|ADCN01000053.1| GENE 16 17663 - 19138 1063 491 aa, chain - ## HITS:1 COG:CAC2612 KEGG:ns NR:ns ## COG: CAC2612 COG1070 # Protein_GI_number: 15895870 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 8 490 3 500 500 217 30.0 5e-56 MNDMTTEYVAAFDAGTTALKGALVNGQGCIVASASSELDLIINGDYREQSPDQWWQAFCS ASRHMIEQARQSESEFNVTRIRGIIFSGQMQDVIALNGELNPVRNAILYSDGRAEEQAKQ LAETYQGGAERFLNTVGNRLEGCLPLPKLMWLREHEPETYARIRHVLISSKDYLIAQLTG ECVGDVAACSTAGAMNIRNGQWDAELCEVAEIDMTILPHLHNPQDNIGTVTESAAQRTGF SAGTAVYAGIGDAGATTLASGVSHPGQYNINIGTSGWIATVSPEPFTDKPGAANLAFGVE EGFVNAVPFLNAGDVHKWVTGVFSDGDYAEAHQLIETSKPGSNGVLCLPYLVGERFPVMN PNIRGAYVGLDPDTAKADMMRAALEGVAFSIRQGMESFDAKPTEISLIGGGARENAWCQI LADVLEHPIEVFANADILPAVAMASLVFNVPDLLQSVCECTVYQPNPDTARTYADAYRRF LSLYPMLRTMD >gi|316915014|gb|ADCN01000053.1| GENE 17 19249 - 20076 819 275 aa, chain + ## HITS:1 COG:lin0819 KEGG:ns NR:ns ## COG: lin0819 COG0656 # Protein_GI_number: 16799893 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Listeria innocua # 1 275 1 274 274 271 47.0 1e-72 MAIQSTIMLNNGTVIPQVGLGVFQTPDGDTTVNAVQTALENGYRHIDTAMIYHNEASVGE GIRRAGVPRSDFFLTTKLWNDDIRARCGKDAFQESLDRLGVDYVDLYLIHWPADGWQQAW DDLQEIYASGRAKAIGVSNFQKHHIDELLTHSDVVPAVDQVESSPQFTNQELIGQLRAKG IATEAWSPLGGTGGNLLSNPVLAGIGAKYGKSAAQVVIRWHIQRGIVVLPKSTHAERIKQ NFEVFDFNLSVDDMTAISAINTGKRNGADPDNFNF >gi|316915014|gb|ADCN01000053.1| GENE 18 20102 - 20563 -79 153 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGTLRHWRVLSSICFRFGHALGARAYVLSVSCLVGFGYAKAPWGVCSKGLPVRVMRRRAT LPHPVGCSTIAVPGLSFRVRNGTGRLTWAMAAANLLLYGREQCPAGLWRPGNRTADADMS MFRLVARQCSLPSGAVCRRKMRSNRQGLECLAS Prediction of potential genes in microbial genomes Time: Fri May 13 13:35:03 2011 Seq name: gi|316915001|gb|ADCN01000054.1| Bifidobacterium sp. 12_1_47BFAA cont1.54, whole genome shotgun sequence Length of sequence - 15781 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 10, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 860 1164 ## COG0501 Zn-dependent protease with chaperone function 2 2 Tu 1 . - CDS 1035 - 2486 2507 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Prom 2492 - 2551 2.8 3 3 Tu 1 . + CDS 2629 - 3459 552 ## COG1373 Predicted ATPase (AAA+ superfamily) 4 4 Tu 1 . - CDS 3799 - 5958 1959 ## COG2217 Cation transport ATPase - Term 6258 - 6304 3.1 5 5 Tu 1 . - CDS 6370 - 8391 2813 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Prom 8670 - 8729 1.7 6 6 Tu 1 . + CDS 8808 - 10121 1291 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + TRNA 10294 - 10379 58.7 # Leu CAG 0 0 7 7 Op 1 . + CDS 10628 - 10849 100 ## 8 7 Op 2 . + CDS 10896 - 11132 217 ## BLJ_0077 hypothetical protein 9 8 Tu 1 . + CDS 11236 - 12093 835 ## COG1272 Predicted membrane protein, hemolysin III homolog 10 9 Op 1 . - CDS 12155 - 12487 569 ## COG0393 Uncharacterized conserved protein 11 9 Op 2 . - CDS 12545 - 14269 898 ## SAS0375 hypothetical protein 12 9 Op 3 . - CDS 14340 - 15248 709 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 15273 - 15332 1.9 13 10 Tu 1 . + CDS 15367 - 15781 323 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316915001|gb|ADCN01000054.1| GENE 1 2 - 860 1164 286 aa, chain - ## HITS:1 COG:MT0589 KEGG:ns NR:ns ## COG: MT0589 COG0501 # Protein_GI_number: 15839961 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Mycobacterium tuberculosis CDC1551 # 8 286 4 277 286 250 52.0 2e-66 MDAKVRVHGHFNGLKTTLLFALMWAIIMLIWWATGGSRQTLSIYIVIGLITTFGTYWFSD KLAIASMGAREVSEQEAPEIYQIVRELSAKAGKPMPRIYIAPTMSPNAFATGRNERHAAV CCTQGILQILNARELRGVLGHELMHVYNHDILTSAIASAMATVISYLGYSLMYFGGGSRD DRDSSGGLGLIGALLSVILAPIAASLIQMAISRTREYDADEDGSLLTGDPEALASALNKI SYGAQTAPMRKTAGTQSVSAMMIANPFSAVGFSRLFSTHPPTDERI >gi|316915001|gb|ADCN01000054.1| GENE 2 1035 - 2486 2507 483 aa, chain - ## HITS:1 COG:Cgl2757 KEGG:ns NR:ns ## COG: Cgl2757 COG0493 # Protein_GI_number: 19554007 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Corynebacterium glutamicum # 5 477 1 446 457 356 43.0 5e-98 MTESVNTELRIAVIGAGPAGVYSSDIFLRQLKKLGEELGLGTEARIDLFEKLPVPFGLVR YGVAPDHPSIKFIASALEKTLDNPNIHLYCDVEFGKDVTLDDLLARYDAVLFATGAVKDK PLNLPGADLEGVYGAAKFVEWYDGYPTGAREWPLTAENVAVIGGGNVAMDVARELMRNAD DLKAKTDIPDNVYEGIGQNKAKVLHLFIRRGVAQAKFSVQELREMEKLPGVQLIINEDDF DLDDETIEVAGKDKLTRQMVEELFAVREMAEDMEDDGDVDFEGNPADRKYYVHFNSAPTE ILGEDGKVKAIRVERTETGADGKMHRTGEFTDYPVEAVYHAIGYKPAEAPGITYDEHGAH LANANGDGRITTEADGGKVRDRLYATGWAKRGPVGLIGSTKSDALAIVTNMLEDLAKAAE GGRVAADRDPESIDRLLAERGIRPIDFAGWKKVDAFERAEGAKEGREHKKVIEPDQMREL AHA >gi|316915001|gb|ADCN01000054.1| GENE 3 2629 - 3459 552 276 aa, chain + ## HITS:1 COG:MT0627 KEGG:ns NR:ns ## COG: MT0627 COG1373 # Protein_GI_number: 15840000 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 24 211 173 361 411 106 32.0 4e-23 MPFSFQEACKADQALTPDTFMLQGGYPRIYDTRMPLNLFFSNYIDTYIERDVSEYLDVRN LAEFRRFLTLCALSSGALINYTNIANELGVSPRTVKAWMSILESSYIAFHLIPFYTNARK QVVKTPKLYFYDTGLLCHLLGIRTVEALVAHPKFGDIFENLIIAETMKQHLNANQEPQLF FYRDASKVEVDLLDFTDPNHRLMIEIKSGQTYHDRFARHLTLIGDVLGIPCEQQYVTSRV EHSYVSQGIRVTSTPRLARRPTVKSRRRAVGILCNQ >gi|316915001|gb|ADCN01000054.1| GENE 4 3799 - 5958 1959 719 aa, chain - ## HITS:1 COG:L96595 KEGG:ns NR:ns ## COG: L96595 COG2217 # Protein_GI_number: 15672077 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Lactococcus lactis # 53 715 23 591 593 363 35.0 1e-100 MSRLIRFFTKILDICKLVPMLPVVVIAAIPLALLGDWRPWGNAMAIPVLGNPGFGQWLVI ALVLVIVIDTVRGMIDDLRHGQVGVDVLAVVAILSTVAVAEYWASWAVTLMITSGEAIEE YAQAKAERSLTALMEAAPQTAHVVNLPGVGRGFAADKGDSSDGFRRVGLASAAAAAHRFD TVPVEQVQLGDVLMVLPGETVPVDGELLSGTATLDLSNINGEPVPREVFAGARVMSGAVN GSTALTMRATQVAADSQYQRILELVASAQESRPAVVKTADRLAVPFTVLSLVIAGVAWAV SGVPTRFAQVLVLATPCPLLIAAPVAYIAGTGRLAAAGVLIKAQDVLENLGRVTQVFFDK TGTLTVKQPQVVRVEMLPGAATRLNEDHVLMMAGAVESYSVHILSKGIAKAGAEALARLR QRFEDGQRLCPEPEASWPGHGREYPVVKNINEDAGKGVSGEVNGHAVRVGRLSFAAAGED GFLAVGEAAPLSPRSGQLPLRGGAQQKDDLRTRFGLLQPDEMASYVSVDGRLIARIVLRD VPRANAKAVLAKLHELGVTELAMLTGDKRASANIIASEVGIDEVHAELFPEDKVAAVRAA TGAGKTVTMMVGDGVNDAPVLAVADIGVAMTDGTSTAASESAQVVIMNDNIAAVPRAIAI ARRTKRVMLQAVIAGLVLATIGMIAAAFNLIPVVVGAFLQEAIDVVSILWALTALIDRD >gi|316915001|gb|ADCN01000054.1| GENE 5 6370 - 8391 2813 673 aa, chain - ## HITS:1 COG:TM0571 KEGG:ns NR:ns ## COG: TM0571 COG0265 # Protein_GI_number: 15643337 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Thermotoga maritima # 336 615 81 349 459 195 42.0 2e-49 MADEFNPQGVDQTPRNNENPNSTADTGNAEPKNPFVGGDSVDAGNASDSSEQQAPVSSAA LAADQQPTQAATEPIPDYASAKGESTVVSSSPASPAAPAADQTSATTPLYRPAPEYGAYG PTPTQAQGQQGGQAGNNAQPTQQFPFGQPAQQTPQGQQGNRNPYYTNNPQPQGNGNPFNP PTQPQQNNGNPFASQSGQNGQNGQQPQQGGLFGFGVPGTGTPNGQGPTQPGQPGQPGQPG PAKQGMSKTASNILIAVVAAVLAAALCLGLGYGALTSGLITLPTSNSLSNVSSNKSGSGS ATAKSGEAPDWQTVASDVSGSVVSIQTALSNGTAKGSGAIIDTEGHIITNNHVISGAQQI QVTLANGNMYSATLVGTDATTDLAVIKLDNPPSDLKAVEFADSDKLAVGENVMAIGNPLG YDDTATTGIVSALNRPVTVTDDNNNEIVTNAVQIDAAINPGNSGGPTFNAAGQVIGINSS IASTATSSDSAGSIGIGFAIPSNLVKRVADEIIKDGKVKHVALGVVIKSDTVEADGVTRG GATITKSSATGSAVVSGGPADKAGLKEGDTIVAFNGNAVNNNYSLLGYVRAAALGDKVTL TIVRDGKTMNVDVTLDQEESSVNGSSGSDSNGNSQNNQNNQNGNGQNGYGNGNGNSDGGT GDGGGFSDPFGLW >gi|316915001|gb|ADCN01000054.1| GENE 6 8808 - 10121 1291 437 aa, chain + ## HITS:1 COG:Cgl0233 KEGG:ns NR:ns ## COG: Cgl0233 COG0343 # Protein_GI_number: 19551483 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Corynebacterium glutamicum # 43 430 18 415 418 466 55.0 1e-131 MTISLLEHPLGAQPGQPGDRSAFHFETITRLPSTASGLGRDGARYGRTGIIHTPHGDIRT PAFVPVGTQAAMKAVLPEQMKDLGAQCLLANAFHLFERPGEDVLDAAGGLARFMNWDGPT FTDSGGFQVMSLGVGFKKTLAMDVTGMKSDDIIAKGKERMAWVDEDGVTFKSPLNGDAHR FSAEISMGIQHKIGADIMFAFDELTTLMNTRSYQEDSVERTFRWARRCVDEHQRLTADRV GKPYQALYGVVQGANYEDLRRRAASQIASLDFDGVGIGGAIEKRIIGDTCAWICDAMPEN RPRHVLGIASVDDIFACVENGGDTFDCVAPARCARNGAIYTRAGRYNIKRAQHKFDFGPL EEGCDCYTCQHYSRAYVDHLLRAREFNGFTLATIHNEHFFVKLLDDIRASIDGGYFDEFR DEALAHFYGNGERRPGL >gi|316915001|gb|ADCN01000054.1| GENE 7 10628 - 10849 100 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKPGQRANSRIGLIPPIPSARRYELRKPECPGSRKQAEIADRDSGFCPGRQVKRLTYEP GQIQIREKPMKQI >gi|316915001|gb|ADCN01000054.1| GENE 8 10896 - 11132 217 78 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0077 NR:ns ## KEGG: BLJ_0077 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 78 1 78 78 114 93.0 1e-24 MNRDETNEVSGVTDDQLGRTAEPYESGNWRGGVGSIIRSNPKSGTDTSRTQQTRIIRVHR LGDVFRNRTTEYHTTEEL >gi|316915001|gb|ADCN01000054.1| GENE 9 11236 - 12093 835 285 aa, chain + ## HITS:1 COG:MT1117 KEGG:ns NR:ns ## COG: MT1117 COG1272 # Protein_GI_number: 15840522 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Mycobacterium tuberculosis CDC1551 # 76 282 33 241 242 99 34.0 9e-21 MSVSISTPSGRTMASAATVAPSATASQKSSASANPTALDRASARYRAAQSRYRQAKAALK AIKRQIVPVDAFGNRKPRLRGWLHLATLPLCIAASIVLICIAPAGSVKAACAVYGASAML LFGNSALLHVVPWRSAKVTRVLCGIDYSNIFLIIAGTNTPVLFALSPAIRRPYLTVIWVT AAIGTILHIVWLRTPNWVFTTVYVVLGLAPVTLIPQLWTAPAVGPAATILIACGGAAYIA GAVCFALRKPNPIPGWFEFHEVFHLGTVIGYACHVVAIYLIVCAL >gi|316915001|gb|ADCN01000054.1| GENE 10 12155 - 12487 569 110 aa, chain - ## HITS:1 COG:lin0240 KEGG:ns NR:ns ## COG: lin0240 COG0393 # Protein_GI_number: 16799317 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 2 106 1 105 110 140 71.0 8e-34 MILVTTTPSVDGYTITNYQGIVFGEVVSGVNMFKDLGAGLRNMFGGRSQGYEEELMRARN EAIAEMQQRAEAMGAHAVVGVDIDYEVLGADNGMLMVTASGTAVQIARTA >gi|316915001|gb|ADCN01000054.1| GENE 11 12545 - 14269 898 574 aa, chain - ## HITS:1 COG:no KEGG:SAS0375 NR:ns ## KEGG: SAS0375 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 4 571 3 608 608 186 26.0 2e-45 MSSYRIDELSVDQLDRISLPKFQRGFVWTKKKQEDFVQTLHDGYPFGTLLVYPENDNDKD AKLQLLDGQQRLSTIKKYRQDPLQFWKPLNRESYTSVYQSVKKMLPEGDKFTEPIFDKLV NSNPNKVAYWAMDSLSSKEDVKAAMQSIDDLKQQIRSFVNLEHLKVPMIVYLGGSAHIAD VFANLNKGGVPLTKYEVFGAAWVNAAIRLRGAEESPLQDQLLQYVKNYYLDMRKQAEFDV DDFSEDELTQNRTVTLPEFGTALGQYVVDHLSALVPETTSAAPEIGFGLLGVAMNLDNRK LSSLNKYIQKIRDELEDILQKTERICNNLQSMFETLLRRFKSTGNDYENGLSSTFKTLSY FAALWDLDPSSEEYTTALSNIKAAYVYDAITSAWSSHGDQRLMEYCNSSRDYGTRISEEQ FDQAFDQWIADQTPGINFGKDIKCLITIHANLSYLSASVPNGETFELEHIIARKRIDAAD SSRPRHILGNSLGNCMYLPRGINNPKKDKTLYEINDHNRYSQLIKESQYFSEDEMQKAMQ ALTASDYESVNGLLRERSRQVAHTLVRALLKDSV >gi|316915001|gb|ADCN01000054.1| GENE 12 14340 - 15248 709 302 aa, chain - ## HITS:1 COG:PA1390 KEGG:ns NR:ns ## COG: PA1390 COG0463 # Protein_GI_number: 15596587 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Pseudomonas aeruginosa # 6 247 1 220 344 103 27.0 5e-22 MAAVTVVITSYNQGPLIREAVESALSQTVRPERIIIVDDGSDEQTSVDVLSAILDDCRHG ALDTGGVAVDFIDQVNAGPSAARNRGIAAAGTPFVVVLDGDDRLMPTFIERTLPLLTADD SMVASSGWLRTFGVLDSVVQPTGGDAGAFVSHNCCPATCMIRRSAWERCGGYDESMRSGF EDWDLFLSMLERGLEPKDDAGKGAAHIGIAPEPLIEYRTAPASSNVTSMTKRLDLMRFLI AKHRDLYAAHIADAILGVEAISMSRLAMWESLMRGDTTASQAFMTHPTYGDGGMAAAVRL QS >gi|316915001|gb|ADCN01000054.1| GENE 13 15367 - 15781 323 138 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 138 1 138 358 242 92.0 4e-63 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCP Prediction of potential genes in microbial genomes Time: Fri May 13 13:35:23 2011 Seq name: gi|316914981|gb|ADCN01000055.1| Bifidobacterium sp. 12_1_47BFAA cont1.55, whole genome shotgun sequence Length of sequence - 12485 bp Number of predicted genes - 23, with homology - 15 Number of transcription units - 6, operones - 4 average op.length - 5.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 239 227 ## 2 1 Op 2 . + CDS 243 - 362 124 ## 3 1 Op 3 . + CDS 372 - 1787 1422 ## COG1475 Predicted transcriptional regulators 4 1 Op 4 . + CDS 1791 - 2312 501 ## BLD_1175 hypothetical protein 5 1 Op 5 . + CDS 2033 - 2887 339 ## BLD_1175 hypothetical protein 6 1 Op 6 . + CDS 2884 - 3300 163 ## BLD_1174 hypothetical protein 7 1 Op 7 . + CDS 3297 - 3506 238 ## 8 1 Op 8 . + CDS 3503 - 4096 524 ## Blon_1795 hypothetical protein 9 2 Op 1 . + CDS 4236 - 4430 272 ## 10 2 Op 2 . + CDS 4423 - 4743 437 ## Blon_1126 hypothetical protein 11 2 Op 3 . + CDS 4740 - 4859 189 ## 12 2 Op 4 . + CDS 4856 - 5107 274 ## 13 2 Op 5 . + CDS 5184 - 5447 232 ## Blon_1125 hypothetical protein 14 2 Op 6 . + CDS 5444 - 5629 157 ## 15 2 Op 7 . + CDS 5703 - 6470 550 ## Blon_1123 hypothetical protein + Term 6520 - 6550 1.0 - Term 6466 - 6502 0.3 16 3 Tu 1 . - CDS 6526 - 6762 95 ## 17 4 Op 1 . + CDS 6652 - 6855 114 ## Blon_1808 hypothetical protein 18 4 Op 2 . + CDS 6852 - 7205 195 ## COG1403 Restriction endonuclease + Term 7281 - 7317 2.2 19 5 Op 1 . + CDS 7337 - 7777 581 ## gi|212715965|ref|ZP_03324093.1| hypothetical protein BIFCAT_00877 20 5 Op 2 . + CDS 7746 - 9209 1863 ## Blon_1811 phage terminase 21 5 Op 3 . + CDS 9206 - 10708 1695 ## BLD_1158 phage portal protein 22 5 Op 4 . + CDS 10629 - 11915 1182 ## BLD_1157 hypothetical protein + Term 11921 - 11949 -0.7 - Term 11909 - 11936 -0.1 23 6 Tu 1 . - CDS 12028 - 12456 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914981|gb|ADCN01000055.1| GENE 1 3 - 239 227 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no DLTNTNIDPITDALYDACDLSQHIFDAANAVNDLINYPVEARERVVKADIERSLLDPWRD LPTSGGDVDPDTGEIKEG >gi|316914981|gb|ADCN01000055.1| GENE 2 243 - 362 124 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKRKHGRQQLEHERQRRRRKRLPHLPAHQNLSTSIKEQ >gi|316914981|gb|ADCN01000055.1| GENE 3 372 - 1787 1422 471 aa, chain + ## HITS:1 COG:mll4477 KEGG:ns NR:ns ## COG: mll4477 COG1475 # Protein_GI_number: 13473772 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 8 150 38 181 295 102 39.0 2e-21 MAISIIDINVKNLIPNPNNPRRDVGDVTELADSIKEQGLQQALVVTPDHEEHGERLFRVV IGHRRLAACKLAGLESVPCVVRELDAKTERELMLVENCQRSDLTPLEEADGYQGLLDLGV NVGELASKTGRSESFVRGRLRIARIPADVRSGSKAFAQLSLAQLDELAEFEDRPDMMAEL ASMAGTKNWDWKRGQLRSRMRVEDWQKRMRQVLDGLGLVVDPGPSIWTTPAGYRYYSTWS GEPDEFKQWYGRWREKNPYGEPVIRFSERNVLCFSQMSPEEIAKRDADSEQRERRNAEDR ALLVKRQDFDALARGLRAEWVKTHAAGFNGGQLRKANTRLSLLALTGTNLCDGLIAGAGW NNLDHVLDAYNLLTTTPLPCDDKRDREMWREQNLAELRRRQHVEGAANRELLLTLCAQLE TLIKPGTWADERDIDLAQTYYQELADLGYPVSDEENKALKGEYLPEDDEAE >gi|316914981|gb|ADCN01000055.1| GENE 4 1791 - 2312 501 173 aa, chain + ## HITS:1 COG:no KEGG:BLD_1175 NR:ns ## KEGG: BLD_1175 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 7 147 6 154 338 70 40.0 2e-11 MTWTQIDDGLNFSPQTMPGTVSNAALGLWVRLCVHTAYQLRFPAFDGAFDLTVVRSLKGN ARQVTELEAAGMLEPALAAGRWMVVEADTLMKFGGTSGSELKEKRAKAGHAGGVASGEAR RSKTKQLLQANREAKPKQTMKQKTKQTMKQNRSKRPKQNEAIASKQTKQPVLT >gi|316914981|gb|ADCN01000055.1| GENE 5 2033 - 2887 339 284 aa, chain + ## HITS:1 COG:no KEGG:BLD_1175 NR:ns ## KEGG: BLD_1175 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 50 281 99 336 338 100 34.0 5e-20 MDGGRGRHPDEIRRHLRQRTQGEKSQGRACRRRRFGRGSTKQNEAIASSKPRSKTEANHE AKDEANHEAKPKQTSEAKRSNCFEANEATGPNLTIPSLTSPVAPSAPNAEPSPAVPGHAG TESGRATPASSLAEAEARVQADPFAFAWEQYPSHTGNREQASRLWQAITGDDPTVPHVEA SQLLGAVIRYAQAVRQDGNRFTPSMRKWLENRQYVKWLASEPIRTEWGGITRQWLSQHAI SLVPAGAWTDSVEQTFWAHVKTGEDPETVAQRLVNEINERSQAS >gi|316914981|gb|ADCN01000055.1| GENE 6 2884 - 3300 163 138 aa, chain + ## HITS:1 COG:no KEGG:BLD_1174 NR:ns ## KEGG: BLD_1174 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 137 1 132 132 99 42.0 3e-20 MSDKPSSQTLRLVEGRERHRCIVCDRYLRLGEWPGVSHHHRKRRSQTYGDAERHAASNIV TVCGMDNSTGCHGWIHRHPEQARALGYLLKSYDPEPSTVPVYSVRRGWILLDADGQWTHC PPPKGMPQHPTINRKEQP >gi|316914981|gb|ADCN01000055.1| GENE 7 3297 - 3506 238 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSNTVCVTGEIDNVDFTREDGTSVTMLIPPDTPVGTRTIIIPQGFTLAEHRIIREAIQD ALADHGEEL >gi|316914981|gb|ADCN01000055.1| GENE 8 3503 - 4096 524 197 aa, chain + ## HITS:1 COG:no KEGG:Blon_1795 NR:ns ## KEGG: Blon_1795 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 5 185 4 188 189 142 44.0 1e-32 MSPEKPDALLWMDVETTGLDTNKCSILEIGLRCTSMDAMREHARLEAVVHISRETMLSAQ LPALDLHLNNGLLAQCETSDPTHCSPEAIALETVRFVKDMNGMYTLHPAGTNIQHFDLPM ILRFCEPVERIDDLLSYRALDLTTLRLTAKSLGRDPYTHREKPTHRVHDCLDRDINEYRH YLTLMTPPALAAKEDRS >gi|316914981|gb|ADCN01000055.1| GENE 9 4236 - 4430 272 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSCTARIWTQDQLEQALASACVLEGVSILHRFQQADKDRRNLKAVAKTMYETSGEPTIVE DDDE >gi|316914981|gb|ADCN01000055.1| GENE 10 4423 - 4743 437 106 aa, chain + ## HITS:1 COG:no KEGG:Blon_1126 NR:ns ## KEGG: Blon_1126 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 3 52 6 55 61 62 64.0 5e-09 MSDLTQQALTALADAGLGNESAAEAFVVGYQAGWDKALNLAISIENELNSDEPTDEEIET CARGFFEDTPGPTNWDAVSEVSKQAWLHAAKKALAAVNAMKTKEQQ >gi|316914981|gb|ADCN01000055.1| GENE 11 4740 - 4859 189 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNENTTLTDIIDAALAAGCQISVTITPKDFYNESQEPEE >gi|316914981|gb|ADCN01000055.1| GENE 12 4856 - 5107 274 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVSESIDWRHSTPGELDLHRFIGLTRRGQTLDGYLSCFMQNGWWTLTDADNLATVIKPD ANGNPTLNTELFRSINVLKEIRP >gi|316914981|gb|ADCN01000055.1| GENE 13 5184 - 5447 232 87 aa, chain + ## HITS:1 COG:no KEGG:Blon_1125 NR:ns ## KEGG: Blon_1125 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 8 87 1 80 80 75 51.0 7e-13 MRRESWSVESTIGLLFTIIIAILALAIVSAIGLAAYAAMDTGPSQRIVQQVETTGDVRRL CIEARTGERVDAMSCDLIDPHTGGVAK >gi|316914981|gb|ADCN01000055.1| GENE 14 5444 - 5629 157 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSQAIRDKVLAWHGRGYGATDTARQLGLPLEEVRAIIREGDGRPKPPCKVEFIEPPLFE E >gi|316914981|gb|ADCN01000055.1| GENE 15 5703 - 6470 550 255 aa, chain + ## HITS:1 COG:no KEGG:Blon_1123 NR:ns ## KEGG: Blon_1123 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 6 253 1 248 258 405 83.0 1e-112 MWRGFVNCQNCNTIIENGYALCTACELRFAGTLLRLARDVTPLHDSLDATLHPGGHAPVR IQTATPPTPIRLDVLDLLDMLDATARELWRCLDVIDALDWHKDPRMEDLEATLIDCAGHP RLATFADAGFYMATINGIARKIDLTLDPPEQRREIGTCELCATMLTAGAADQWVTCPVCG REQRAQTVKLRRLKTLCWDDSRRGSAAEIAKAFTDAGIPVRRGTLNVWVNRGKLPSSPQG LAYCDVYRLVIGGAA >gi|316914981|gb|ADCN01000055.1| GENE 16 6526 - 6762 95 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAGRGDAHGRGQGVNVAEGVPLARDPQADGRHARHCHGVIASQSNEKSGGANITGALDVP AEYSRPMQCGQIRENPAT >gi|316914981|gb|ADCN01000055.1| GENE 17 6652 - 6855 114 67 aa, chain + ## HITS:1 COG:no KEGG:Blon_1808 NR:ns ## KEGG: Blon_1808 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 3 63 1 62 65 62 50.0 5e-09 MTMPGMPTISLRITCKGNTLGDIDALPAPVSVTPSGHLVVDPLEPVMRRAVQAFVDAWQR SCDKAGL >gi|316914981|gb|ADCN01000055.1| GENE 18 6852 - 7205 195 117 aa, chain + ## HITS:1 COG:SPy1468 KEGG:ns NR:ns ## COG: SPy1468 COG1403 # Protein_GI_number: 15675375 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Streptococcus pyogenes M1 GAS # 22 82 22 82 114 58 44.0 3e-09 MSGRRGNTRHANGWRRQQVVARVLAAYDTCHLCGRPVDKSLPPGLPGSPEVDEIIPVSKG GSPYLFSNCRLAHRWCNRVRSNHSVAWAREHIKQTFEQGHTADLKATSMPLVTSGDW >gi|316914981|gb|ADCN01000055.1| GENE 19 7337 - 7777 581 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|212715965|ref|ZP_03324093.1| ## NR: gi|212715965|ref|ZP_03324093.1| hypothetical protein BIFCAT_00877 [Bifidobacterium catenulatum DSM 16992] # 1 119 1 116 139 87 41.0 2e-16 MICEECGQPFTPSGRGKKAKYCSAKCKQRAYRKAKRMSRVTTPPAPAGDAEHEPEAMDAL TAADFEAMMNDGPEDYVSVLKRTQARLKEAMFSAGTPPGSLTGISKQLLALTREIERLEG NPAQGMTTQEDPEDDDDDGEFRPEAI >gi|316914981|gb|ADCN01000055.1| GENE 20 7746 - 9209 1863 487 aa, chain + ## HITS:1 COG:no KEGG:Blon_1811 NR:ns ## KEGG: Blon_1811 # Name: not_defined # Def: phage terminase # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 19 486 5 467 467 531 54.0 1e-149 MTENSDPKLSEVARHIVMPSGIVTSMFLKVNKRAKACGIRYDRWQQGLLTLILGRRADGT FAASVGGVVLSICRQTGKTFTVSSLVVILCTLIPNLTVIWTAHHNRTNSNTFDHVRTLVR NPALIGYLDHSGRTDGVRGGNGMQEITFANGSKILFGARAQGFARGNDAVDIIVFDEAQI LTEQAISDMVPATNTSPNALVLYIGTPPRPADPGEAFTERRRQALAGEDDMLYVEFSADR DADSDDRAQWRKANPSFPRRTSETSMLRMQRQLGKDSFRREALGIWDETATNRAINPEQW TKAATGTPNIKGLIGYALDMKPDRSSLAIGGAVNHRDGTAHIELRRFESTQSKGTQWAVD YIADHWPRTASVVIDSQSPAMSLLADLKARHVKVIVTNYSDMGRACGKFLDMLRDGKLTH LPDDKAPALATAVANATTRSIGKSGAVGWNPMGSDIDISPLVACTLALYGTTITKRDPDR VQEVMIG >gi|316914981|gb|ADCN01000055.1| GENE 21 9206 - 10708 1695 500 aa, chain + ## HITS:1 COG:no KEGG:BLD_1158 NR:ns ## KEGG: BLD_1158 # Name: not_defined # Def: phage portal protein # Organism: B.longum_DJO10A # Pathway: not_defined # 10 500 18 504 507 421 47.0 1e-116 MSEQSISFGNPYLSTGSSSVTHIANVPDNDMTDITRLLELWRNKYPRNLLRSAFYDAKQR FNNLGISIPNIVAQKAGVVVGWPQKSVRALADKSVFEGFETAAGADNHGIDEIMRMNELE TDMSEAVISCYKHSCSFLTIDYDPDDNERILITPRSADWSAALWDNERRRIKAALTITDS DKWGNITAFNAWLPGRNYACMKTGYGWEAEPQYNRLDRVAVVPIVYDKQMDRPFGRSRIN RALMNLTDMAMRTMVRMEASAEFYSVPKIWFLGLSRESFQQDTWSALVSSINAISRDING DIPELKQVSQASMQPHGDMLETIAMLASAETDIPPEQLGIRLANPTSAEALAAAENQLTR TANRQNRMFSRQLLNAMGMAVQLRDNSPQPPDLTGIRPLWAPTREVSDAARADYYTKVAG VNGDWADSDVGLAKLGLTAGELQSFRAYQQRMKAQRNIEQLRQQRMNPQDTEAADGSESE GPAGTAAAVGQGVQGLPDRP >gi|316914981|gb|ADCN01000055.1| GENE 22 10629 - 11915 1182 428 aa, chain + ## HITS:1 COG:no KEGG:BLD_1157 NR:ns ## KEGG: BLD_1157 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 5 239 15 256 451 177 43.0 9e-43 MAANPKAPPELQPLLDRAYRDYQTDLDNLRESAADVIENMVDRDPLNVKDAIRDFSRDAS QLANEYYDTVRGLWSEYAGVRLDDFDHTRLIDPDRALWQVQGGFNNTDYNGLTYTQVKNG QSRAGLTIDDLWPDLGNPDDAMQFVADMVNAAARLTTQRNMRIDPSKPRWARVPRGARTC AFCTMLASRGFTYLSEDSAGLEMQYHRDCDCQIVPSWGRQTLAGYNPERLTAMWQEASKG GGDYREKLKRMRRDNPMAFTDGVYPTPTMPWEQSVRLLSMKGEPKGTAESWYRRQLAVGV DPSREILERHEIVFLEKFQKLGEEYEWIPKSHDGKPSNDFHWLSHECDAELKSPASLKYR NVAQRINDAVVGGVEQGVVKDVFVLDFGSTKLPDKFVNQLSLYNARHESHIKELWVFDSE GFHQIVLK >gi|316914981|gb|ADCN01000055.1| GENE 23 12028 - 12456 199 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 3e-15 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 13:36:48 2011 Seq name: gi|316914971|gb|ADCN01000056.1| Bifidobacterium sp. 12_1_47BFAA cont1.56, whole genome shotgun sequence Length of sequence - 11319 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 7, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 29 - 457 199 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Prom 558 - 617 2.0 2 2 Tu 1 . + CDS 649 - 2850 1543 ## COG1154 Deoxyxylulose-5-phosphate synthase - Term 2670 - 2698 -0.9 3 3 Op 1 . - CDS 2834 - 4420 1830 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 4 3 Op 2 . - CDS 4432 - 5607 1447 ## BLD_0891 S-layer protein 5 3 Op 3 . - CDS 5604 - 6359 226 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 6544 - 6603 2.8 - TRNA 6608 - 6684 76.8 # Arg TCT 0 0 6 4 Tu 1 . + CDS 6761 - 7969 1025 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 7 5 Tu 1 . - CDS 8056 - 8925 821 ## COG1737 Transcriptional regulators - Prom 8960 - 9019 2.4 8 6 Tu 1 . + CDS 9077 - 10852 1506 ## COG3534 Alpha-L-arabinofuranosidase + Term 11032 - 11058 0.1 9 7 Tu 1 . - CDS 10842 - 11300 181 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914971|gb|ADCN01000056.1| GENE 1 29 - 457 199 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 123 198 312 317 81 43 3e-15 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PAEAFADELLELQDQQGCCTSK >gi|316914971|gb|ADCN01000056.1| GENE 2 649 - 2850 1543 733 aa, chain + ## HITS:1 COG:CAP0106 KEGG:ns NR:ns ## COG: CAP0106 COG1154 # Protein_GI_number: 15004809 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Clostridium acetobutylicum # 45 729 3 581 586 476 40.0 1e-134 MRSASGNGFDSSDSFAVSGAAERTARLHDIPPSITPSHGDDSHLLSRIASPADVKALAPD ELAELCREIRTTLLAYGHQHGGHIGSNLGMVEATVALHRVFDSPRDRIVFDVSHQSYVHK MLTGRAAAYLDPDRFSEVTGFTNPDESKHDQFVLGHTGTSISLACGLAKTRDMEGPNSGI GNVIAVIGDGSLSSGVAFEGLNNAAEQGGNLIIVFNDNEMSIAGDFGGMYGPLARLRASG GTAQPNLFNAFGLDYRYVEAGNDVSALVAAFEEVRDIDHPVVVHIHTLKGAGYDGAGHVA GASSASAGNVHELDPAVSDTGVRPTSNVLHSEPWHSDHCNLSDHEPHEGQCEASHWQNPD AAIGKPDDPRKHYGKMAMAALEPRFAAEPGLVVISPATPGSNGITHEFRERAGAHYVDTG ITESHAVAYAAGIARAGGTPVVATTASFFQRAYDQFFQEMSLNRSRVTVLDFLGGLSGSD NTHSGAYDVTMFSNIPGVTMLVPTSARDYLADLAWATAPAGSADAPAGPVVIRVPGEAIL AAERDATLLPVTGGQIADRPQSASLPASASSASGGISAATVRGTVSVTAQHAGARHMLDW RVNQTGSQVAIIGLGNAYPLAEQTAAALSDDYGITATVIDPRQCTSLDSDVLESLRDGHQ QVITLEDGQLEGGWGEKVTAYYANHHVSDGSRNPRVLNFGAAKEFTDRVSLGELNERYGL TVEQVTEAITRCF >gi|316914971|gb|ADCN01000056.1| GENE 3 2834 - 4420 1830 528 aa, chain - ## HITS:1 COG:CAC3584 KEGG:ns NR:ns ## COG: CAC3584 COG0577 # Protein_GI_number: 15896818 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Clostridium acetobutylicum # 306 526 256 440 440 97 28.0 8e-20 MRFGDILRLCRQNLWRRKSRTILTVLGVIVGCCSIVLMVSLGQGINEQNEKMLKSMGDLS IVTVYTNGYAGPMGGGGSSEMGDTKLDDKAVESFRAMSGVSGVTPMMNFPYNVTARAGAG GRYLYDYVQIMGIDMTQFDQMGYKLVGGEKPVKKDQVLAGEWFAYGFMDTLKNGEQRTST RGGQYSSCTFDQTTGQCEEDQDEDPFFDPLATQISLTTGTNYQGDQYTMNMYGGGGGTGG AGGGGGAGGASGSAAGQSENVTLDVLASGIVAGDYNKGYATSDGLVMDLQALKELAAKVD PAAAKKATAYDQVLVKAADLKSVPEVESQIKALGYETSSYEDMRKSLEEQSRAIQLILGG IGAVSLLVAAIGIANTMVMSVTERTREIGIMKALGCYVRDIRVMFLAEAGAIGFFGGSIG CVLSGLISLGINVVGALYAGGMSGGMSGGMVSGAGGGSGDGTGGGTSIWTILWQAIVGGE NVTRYSVIPWWLFLFAVLFSTLIGLLFGFGPANKAVKIPALDAIKNNE >gi|316914971|gb|ADCN01000056.1| GENE 4 4432 - 5607 1447 391 aa, chain - ## HITS:1 COG:no KEGG:BLD_0891 NR:ns ## KEGG: BLD_0891 # Name: not_defined # Def: S-layer protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 391 1 388 388 587 98.0 1e-166 MKHLSHRTIAIIVALLSTLSLALAVISLPHQAYAVDGTDGTSGTNSTSQGSDGDSAPIAG PVPNIIVTNFTYGGDSVAAGADFNLDFTFQNMGQVAVTNMVITVDGGESFAIAGGTNTFY VDALWGGYAMTQSVPMQALASAKSGAQPVTVNFRYEYVDASARSSSQSDVKISVPISQPD RFEISDPVVPDQVIAGQENTVTMEYVNKGKGDIANVEATMEGEGFDATMKTQYVGNVASG ATGTIGYAFTPHASGELKTTLKVTYEDSDGQTKTKEFPLTIPVTDMQPVDDSDMADPNLD QSANQGLPVLVYVVIVVIAVVIIVVIVLLVRRRRKQKAKKNDIDEDWDDWSEGKDDKTDT GVTDGAAADTAPITPVTPASSVAPAGSSHKA >gi|316914971|gb|ADCN01000056.1| GENE 5 5604 - 6359 226 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 220 7 217 318 91 29 2e-18 MPRAIIEVRNLRKEYPVEDETVVALDRVNLSIPQGQICCIFGESGSGKSTLLNQLAGMEK PTRGGVRIGGVPVSKLDERELAAFRQKHLGFVFQSYNLLPNLTALENVAMPLMFRGVPKE QRERAARGVLKRVGLGHRLSHYPRQMSGGQQQRVGIARAFVTKPEVVFADEPTGNLDSKT KTEVMTMICAFAHDFNQTIVLVTHDPQMASYADRIVTLLDGRITSDRLNTDLSRPTVPST LSAQRTQGVDR >gi|316914971|gb|ADCN01000056.1| GENE 6 6761 - 7969 1025 402 aa, chain + ## HITS:1 COG:MA2121 KEGG:ns NR:ns ## COG: MA2121 COG2865 # Protein_GI_number: 20090964 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Methanosarcina acetivorans str.C2A # 92 228 205 353 458 74 33.0 3e-13 MGTTESNVDHAASGQTVAGDSGELTFTYAQGRFASEGRDWESPVVTNMAASVSADAGNAP AGSITNTGTNNTFTSTTESSLATLLSNQCPFVIKATIFEGNGKNTIRERHTFTGSVLRQL DQASALLNGINESGQYPAIALREALVNALEHRDYTYSGPTLINIFDSRLEIVSLGGLTDG LEINDLLNGVCQPRTPRLAELFADLGLCENCGTGIQRIMDAYAQSAVSPQLRVGPTSVAM VLPIPVSAEAASSHRTDAEASAAPSTTDEAQHAKMYSFPTIQRMTDNAADALAGARIIGC APLQTLILGSGFGERPDGDDQASTRPLDTATLEPSPQTLEQFTLNFLAFRGVKLSRKTMQ KALGLNKDQMTQLLDQLELSGKIERHTHAKSTTYSLAHASGR >gi|316914971|gb|ADCN01000056.1| GENE 7 8056 - 8925 821 289 aa, chain - ## HITS:1 COG:CAC0191 KEGG:ns NR:ns ## COG: CAC0191 COG1737 # Protein_GI_number: 15893484 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 10 263 7 258 283 113 28.0 4e-25 MQSSVGIRERIDHVYPSLRPAERAVAQYIRNHIEEAADLTVGQMADIAHVSQPTVIRFAR KLGFGGYRELRYVLRNPAAEHKVTFNPLAGFDLNPWDGEDEIPGKAADGAKALIDELHSA LDPKAYRKAVALLAESEFIDIFGVENSLTPAMDLFTKLGYLGLTCRLNTDAYLQQIGAGH LPHGAVAVAFSHSGSSADTVKALRLAKSHGAKTIAITNAIGAPLASWADVTLLTGRDSHT IYGNAIFSRVADTALVDMLCMGVILSDYGRFSTALDESGRMIRDRVFEN >gi|316914971|gb|ADCN01000056.1| GENE 8 9077 - 10852 1506 591 aa, chain + ## HITS:1 COG:CAC3436 KEGG:ns NR:ns ## COG: CAC3436 COG3534 # Protein_GI_number: 15896677 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-arabinofuranosidase # Organism: Clostridium acetobutylicum # 2 586 39 504 835 253 30.0 8e-67 MVRISVGSPTHHTSGRLYGVFFEDINHGADGGLNANMVNNYSFDGVYLDHHTWRMAGAER WRTQADSLRFWDFINCSAASLGSEIRGIHGQRVTTDCPAPPIHAHSRYARITSDVPSETG PAYLENLGYNGGGDNGGEPAFSIVADHTYSVSLAVRPVHGRAELSVGVVDRYGLPLTSIT RLSYIVDSDPLDDTEETGLRQDDGADAQDSGVSISPDSSDGAIVIGRDGWYRFNADVTGL NTDYGKLRITIDAGERTTFDLDLVQFMDADYWGAGDPKWRYGKLRRDLVETIQALHPAFL RFPGGCIVEGVTPGNEYRWKDTVGSLAARRQQYSMWSFKMPDGSSYSQSYQIGFYEYFCL CEDLKAKPLPTLFAGIACQSPGRDPHHMDINSATFRNNVIQDYLDLIEFANGDPESSSWA AVRRDMGHPEPFGLDMIGVGNENFGADYVAKFDMISEAIHERYPDMLCVMSAGLFPFQPT MKRSWDHARALAATDSGAHDSATGDAIIVDEHSYHSPEWFAYQASRFDAYPRCGAGVYFG EYSANGYFAGQPQTEQGANTWKSALGEAAFLTGCERNSDVVRMTSYPGFNL >gi|316914971|gb|ADCN01000056.1| GENE 9 10842 - 11300 181 152 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 128 192 312 317 74 39 4e-13 CMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVD EALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKL LGYKTPNEVWDEEMAKLQSKQADPKPAVALTS Prediction of potential genes in microbial genomes Time: Fri May 13 13:36:58 2011 Seq name: gi|316914960|gb|ADCN01000057.1| Bifidobacterium sp. 12_1_47BFAA cont1.57, whole genome shotgun sequence Length of sequence - 11286 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 8, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 68 - 1147 1077 ## COG1929 Glycerate kinase - Prom 1198 - 1257 2.9 + Prom 1252 - 1311 3.8 2 2 Tu 1 . + CDS 1427 - 2485 1322 ## COG1609 Transcriptional regulators + Term 2623 - 2658 1.5 - Term 2519 - 2554 1.1 3 3 Op 1 4/0.000 - CDS 2565 - 3842 1059 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 4 3 Op 2 . - CDS 3974 - 5854 2806 ## COG0481 Membrane GTPase LepA - Prom 5966 - 6025 3.7 + Prom 5911 - 5970 5.4 5 4 Tu 1 . + CDS 6001 - 6261 404 ## PROTEIN SUPPORTED gi|23335026|ref|ZP_00120264.1| COG0268: Ribosomal protein S20 + Term 6282 - 6333 15.8 - Term 6380 - 6443 2.8 6 5 Tu 1 . - CDS 6513 - 7304 1029 ## COG2860 Predicted membrane protein - Term 7397 - 7421 -1.0 7 6 Tu 1 . - CDS 7552 - 8451 877 ## COG1694 Predicted pyrophosphatase - Prom 8509 - 8568 2.5 - Term 8561 - 8633 11.2 8 7 Op 1 . - CDS 8648 - 9775 1924 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 9 7 Op 2 . - CDS 9782 - 9862 85 ## - Term 9907 - 9952 13.4 10 8 Op 1 . - CDS 9999 - 10619 1015 ## PROTEIN SUPPORTED gi|23335022|ref|ZP_00120260.1| COG1825: Ribosomal protein L25 (general stress protein Ctc) - Term 10707 - 10753 3.7 11 8 Op 2 . - CDS 10817 - 11215 184 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914960|gb|ADCN01000057.1| GENE 1 68 - 1147 1077 359 aa, chain - ## HITS:1 COG:CAC2834 KEGG:ns NR:ns ## COG: CAC2834 COG1929 # Protein_GI_number: 15896089 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Clostridium acetobutylicum # 2 359 21 378 380 323 49.0 4e-88 MEAARAMAQGIENADHDAEVRCLPMADGGEGTARALVDATGGSMHAVPVHDPLGRPVEGH FGLLADGTTAVVETAEASGLALLEAKERNPLIASSYGTGELMLAAVRSGAKRIIVGLGGS ATNDAGAGLLQALGVRLLDGNGNDLKHGGAALADLATIDISTMDPALKNVAIIAACDVTN PLTGPTGASAVFGPQKGASKDDVATLDAALAHFAQVIESQLGVAVNDVPGAGAAGGIGAA LKGFLNAEFRPGIAIVIEQSGLDAAAQWADVVFTGEGSIDFQTKFGKTPAGVAETAKRHG KPVIAVAGHIGTGIDELHEVGIDAVFGIAPGAASLSELLADAAANVTRTTEQIVRTLQL >gi|316914960|gb|ADCN01000057.1| GENE 2 1427 - 2485 1322 352 aa, chain + ## HITS:1 COG:BH2219 KEGG:ns NR:ns ## COG: BH2219 COG1609 # Protein_GI_number: 15614782 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus halodurans # 2 348 7 327 335 119 29.0 8e-27 MDVAKEAQVSIATASRVLNGSTRKVRNQSYVKVMEAATKLNYRPNAYAQAVAKGTAPNIV LLVSDISDPYFASVSQGVVKAAAERGISVTIGVAATPHEELETVRKSVSTRPRGIIISES EYTDAPERQALQTELTQYEASGGRAVFVLNRNLPFPAVDVANDVGARAIAKLIVDSGYTR PAILKGDDAHRSSKERLAGVMEVLDEAGITVDPKAVANGKFSRTDGYAAVMQMARSGLLK PGEGALYDGKGIDSIIALNDVMAIGAMTALRANGIEPGREIGVTGFGDIPYSADVFPPLT TVHLPLAEMGQAAVDSILSNRDDGEATGGTANRLIYVQSAPDVVLRGSLPRR >gi|316914960|gb|ADCN01000057.1| GENE 3 2565 - 3842 1059 425 aa, chain - ## HITS:1 COG:Rv2388c KEGG:ns NR:ns ## COG: Rv2388c COG0635 # Protein_GI_number: 15609525 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Mycobacterium tuberculosis H37Rv # 13 253 55 303 375 214 47.0 2e-55 MKLTKQWQLDHGIEEPPVSTVFFGGGTPTILAARDLVAMLDAVRKIWSIAPDAEITTEAN PDTVNEYYINELAAGGFTRVSFGMQSAVPHVLKTLDRTHTPANVAVGVNAANKAGLRSSV DLIYGAPGESLDDWRTSVTTAIDLGVNHISAYALTVEPTTKMGRQIAAGTLPKPNDDDEA AKYEIADDLFAAAGLEWYEVSNWARPGYESQHNLGYWRNVDWAGLGPGAHSHYNAVTEAD HPQSASLTAPAGGSKSEAIASASADGQANAELGMINAHGNNSQEIHAPAGGGCPADAGLG VVSVSHGLRSWDIAHPRLWGTAINENRVPWADSETITPEENLEELIMLGLRLHEGLDLDR INRAINDAGMSSTPQTLRNVSLDQLAPMVSEGLITVSDNHRVVPTRRGRLLNDSVIEQFF DFVGV >gi|316914960|gb|ADCN01000057.1| GENE 4 3974 - 5854 2806 626 aa, chain - ## HITS:1 COG:MT2476 KEGG:ns NR:ns ## COG: MT2476 COG0481 # Protein_GI_number: 15841921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Mycobacterium tuberculosis CDC1551 # 11 605 47 644 653 869 70.0 0 MVVQHNQPGSTDQSVIRNFCIIAHIDHGKSTVADRILQLSGIVPEREMRDRFLDRMDIEQ ERGITIKSQAVRVPWTFDGTEYTLGMIDTPGHVDFTYEVSRALAACEGAVLLVDATQGIE AQTLSNLYMAIDHDLAIIPVLNKIDLPSAEPDKHAEEIAGLIGCEPSDVLRVSGKTGEGV ADLLDQIVMDVPAPHGDPDAPARALIFDSVYDSYRGIVTYIRMEDGELHDREKVHMMGIG MTHDPIEIGVISPDMTRTKALGAGEVGYIITGAKDVSQSKVGDTLTSAVRPAAEPLPGYR DPKPMVYAGLFPIDNAQFPELRDALDKLKLNDAALIYTPETSVALGFGFRCGFLGLLHME IVNERLSREFGLDLIQTAPNVTYDVTAEDGSQHHVTNPSEFPDGKIKKIVEPMVAADIIT PKEFIGAVMDLCQDHRGIMGTMEYISTDRVEMHYRIPLAEIVFDFFDQLKSRTKGYASLD YHEDGEQSADLVKVDILIQGEKVDAFSAIVHRDKAYSYGVMMTKKLRSLIPRQQFEIPIQ AAIGSRIIARENIRALRKDVLAKCYGGDITRKRKLLEKQKAGKKRMKMLGHVEVPQEAFI AALSTGEDSNDRDTKDKIRAAQKTEG >gi|316914960|gb|ADCN01000057.1| GENE 5 6001 - 6261 404 86 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|23335026|ref|ZP_00120264.1| COG0268: Ribosomal protein S20 [Bifidobacterium longum DJO10A] # 1 86 1 86 86 160 98 5e-39 MANIKSQKKRVLTNEKAHLRNVAVKSGLKTAIRATREAIAAGDKAAAEAAYKVAAQKLDK AAGAGVIHKNQAANRKSGLAVAINAL >gi|316914960|gb|ADCN01000057.1| GENE 6 6513 - 7304 1029 263 aa, chain - ## HITS:1 COG:RSc2344 KEGG:ns NR:ns ## COG: RSc2344 COG2860 # Protein_GI_number: 17547063 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 15 212 14 206 207 93 32.0 4e-19 MQVALENNIVFVVIEYLAILCWGLSGGLAAIRKGYDIFTIMLCGWLTALGGGLVRDVMLG ALPPVGITDKGYVLTTLFSGIIVVVAHPEITKLKWTMTVIDALGLGLFAVSGTAKALAYG SSGMTAVFLGMFTALAGGLIRDIFIGDVPMIIRDKHLYAVPSFIGCILTVLVWRGVSYGW FDMRSEMLLDVLIVIIVVALRLLSVGFNVTLPGAVERHRVYLPSESRYLKRPVIHPHADT VDPGDTTKDEEDKPQDGSRPPQG >gi|316914960|gb|ADCN01000057.1| GENE 7 7552 - 8451 877 299 aa, chain - ## HITS:1 COG:HI0460 KEGG:ns NR:ns ## COG: HI0460 COG1694 # Protein_GI_number: 16272408 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Haemophilus influenzae # 38 298 7 245 263 105 32.0 1e-22 MSKMSDMTEYHASAYRLPSGFEHCSKLKPVAEAATALDRVKAVVDVLYSPGGCPWDGKQT NKSLLKNLLEETYEYVDAVETHDRDNMREELGDVLLQSVFQARVCESDTEDPFGIDEVAD RLVNKLITRHPHVFAADDAGNSSDSSDAFDADSNDGGEAAQPESPEAVLALWEKMKQQEK HRKSVLEGISRAQGALPRAAKVVSRISKSPNADRLFAAFDEPAAADAQRDDVHPQAANQS ESSGDNSAEREKADAYADEILAVVRKARVDGIDIESALRNRLRDVEEKVALIESEINND >gi|316914960|gb|ADCN01000057.1| GENE 8 8648 - 9775 1924 375 aa, chain - ## HITS:1 COG:XF1999 KEGG:ns NR:ns ## COG: XF1999 COG0115 # Protein_GI_number: 15838593 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Xylella fastidiosa 9a5c # 19 371 5 357 362 377 51.0 1e-104 MTENTHHDPAALDKLAEPFTVLPNDNPASDEKRQSLIDKPAFGQVFSDNMTHMTWTKGEG WSDRRVEPYAPLKMDPGASVLHYAQECFEGLKAYRHADGSTWLFRPDANAERFQNSAKRL YLPELPIDDFLGSVAALVKRDANWVPSRREYTLYMRPFMFASEPFLGVRAPQEVDYCVIA SPSGPYFPGGVKPVSIWVEDKWFRTGPGGTGFAKCGGNYAASLLGEYKGVENGCEQVCFV DAATKTYLEELGGMNMMAVHKDGHVETPSLTGNILPGVTRRSLIQLLQDKGHDVVETMIA LDQLLEDIKSGEVTEVFACGTAAIITPIGRFKSEKFDVTVADGGSGKLTCELRDELLGIQ LGEVEDPHNWMWKVC >gi|316914960|gb|ADCN01000057.1| GENE 9 9782 - 9862 85 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQSSRHKRTAHTPYGGFRAAKVKKK >gi|316914960|gb|ADCN01000057.1| GENE 10 9999 - 10619 1015 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|23335022|ref|ZP_00120260.1| COG1825: Ribosomal protein L25 (general stress protein Ctc) [Bifidobacterium longum DJO10A] # 1 206 1 206 206 395 100 1e-110 MATTIKLEGEARSEFGKGVARRLRVANKIPATIYAGGEEPAFVTLPMRETTLALRHTNAL FTIAFDGNTKMAVVKDVQKNPVKRIIEHVDFLEVKAGEKIDVEVPVFVEGTPKGAAVAFV DIQELKVRADVANLPEKIVVSVEGLTDGTKVFAKDVVLPEGVELDVEDPEESVVTVEVPE DASESTAAPEAAAPAADAAAPAADAK >gi|316914960|gb|ADCN01000057.1| GENE 11 10817 - 11215 184 132 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 113 207 312 317 75 43 2e-13 RIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYFADPYSS WQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEAFADELL ELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 13:37:05 2011 Seq name: gi|316914948|gb|ADCN01000058.1| Bifidobacterium sp. 12_1_47BFAA cont1.58, whole genome shotgun sequence Length of sequence - 9394 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 8, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 381 315 ## Blon_1662 integrase, catalytic region - Prom 502 - 561 2.2 2 2 Tu 1 . + CDS 439 - 963 336 ## BLJ_0550 alpha-L-arabinofuranosidase A-like protein + Term 966 - 1000 2.6 3 3 Tu 1 . + CDS 1090 - 1404 298 ## Blon_1990 hypothetical protein + Term 1523 - 1557 -0.1 4 4 Tu 1 . - CDS 1429 - 2616 1549 ## COG0471 Di- and tricarboxylate transporters - Prom 2745 - 2804 2.5 + Prom 2483 - 2542 3.3 5 5 Op 1 . + CDS 2706 - 2921 112 ## 6 5 Op 2 . + CDS 2918 - 3040 188 ## gi|239622320|ref|ZP_04665351.1| predicted protein + Term 3085 - 3146 26.6 - Term 3073 - 3134 26.1 7 6 Op 1 . - CDS 3165 - 4097 964 ## COG1446 Asparaginase 8 6 Op 2 . - CDS 4452 - 5963 944 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 9 6 Op 3 16/0.000 - CDS 6021 - 6659 791 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis 10 6 Op 4 . - CDS 6686 - 7561 1503 ## COG0214 Pyridoxine biosynthesis enzyme 11 7 Op 1 . - CDS 7777 - 8172 292 ## COG3655 Predicted transcriptional regulator 12 7 Op 2 . - CDS 8169 - 8795 727 ## gi|227546320|ref|ZP_03976369.1| hypothetical protein HMPREF0175_0744 - Prom 8835 - 8894 3.8 + Prom 8786 - 8845 2.2 13 8 Tu 1 . + CDS 8956 - 9394 282 ## Blon_1662 integrase, catalytic region Predicted protein(s) >gi|316914948|gb|ADCN01000058.1| GENE 1 3 - 381 315 126 aa, chain - ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 126 1 126 368 211 96.0 4e-54 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGRL >gi|316914948|gb|ADCN01000058.1| GENE 2 439 - 963 336 174 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0550 NR:ns ## KEGG: BLJ_0550 # Name: not_defined # Def: alpha-L-arabinofuranosidase A-like protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 9 174 586 751 751 326 100.0 2e-88 MHFYLEPDYAPLLAHIPAKGWAQNLIELNPAHVNPTVNYEVERLFSTHLGDTTYAVSIEQ TASRPAKHLYVSATGHDGDDACRYIKIVNTSDSPVDVTLEIARGLAGLGASPSRPVRLEV TTLSASPTAKTTIGYRGEASGAIVPERRAYTLPSPSSLLAMKIKPYSVTLVASR >gi|316914948|gb|ADCN01000058.1| GENE 3 1090 - 1404 298 104 aa, chain + ## HITS:1 COG:no KEGG:Blon_1990 NR:ns ## KEGG: Blon_1990 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 104 1 104 104 141 97.0 8e-33 METTAARRPPANDEGVCGTFINLFRRQRPALARLARNSNAYRQPMVAAVSSSAVGVSSIT SAANTANTDGVSGVSTLDATIGRIHDIPQSAMSRLTGSPTVYAR >gi|316914948|gb|ADCN01000058.1| GENE 4 1429 - 2616 1549 395 aa, chain - ## HITS:1 COG:L20481 KEGG:ns NR:ns ## COG: L20481 COG0471 # Protein_GI_number: 15673760 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Lactococcus lactis # 50 391 59 387 392 108 29.0 2e-23 MRRWLINVAKNETILIVAAILALISCFIVPPDADYKSYIHASTISQLICLMIVVCGFQRI GVFRIIGSRLLEKVSTMRGLVITLVALTFFSAMFITNDVALVTFVPFAVAVLIMAGQEDK TILVVTLMTIGANVGSMLTPIGNAHNLYLKALTGMPTMEFLGIMAPYSGTAAVLLVIVIS VVFGGKPVGDLGDLETGVLAPERNKHQPDEIRITGYGAGYGGWRTIVYSLLFIVCLLAVS DVIPLWVMCVIVVVVFLFTDRRVFKYVDWGLPLTFCMFFIFIGNMKRVPEFYELARSLVG GHPLEVAVGSSQVISNVPTTILLSGFCDQWRDLIIGTNLGGMGTLIASMASLISYKNVVR QYPHKKGRYLAVYSAVNVLFLAVLLTLSWIIEPSL >gi|316914948|gb|ADCN01000058.1| GENE 5 2706 - 2921 112 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSFWTGAAHQPRSFFYLDKETLSLHVFHTMNCRAMLCPYIRLHHCVAGQTRIPYVAGSYQ WNIVSFEEEER >gi|316914948|gb|ADCN01000058.1| GENE 6 2918 - 3040 188 40 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239622320|ref|ZP_04665351.1| ## NR: gi|239622320|ref|ZP_04665351.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] # 1 40 12 51 51 69 100.0 7e-11 MKLRITPVFPVKRFAAVSAQNVKNVQFDYTNMPTYNTITK >gi|316914948|gb|ADCN01000058.1| GENE 7 3165 - 4097 964 310 aa, chain - ## HITS:1 COG:STM0847 KEGG:ns NR:ns ## COG: STM0847 COG1446 # Protein_GI_number: 16764209 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Salmonella typhimurium LT2 # 22 296 6 295 313 172 40.0 8e-43 MTTSSVSPVTTELAGSETGITLVIHAGAGSRGKHSTPERIAQVELDLQRALDAGYQLLES GAPAHEAVVAAIHVMEDAPEFNAGRGAALTSDGIAQMDACLMTGDGEVGAVTGVSTVKNP IDAARAVKEQTKHVLFADPTDAEIADWGVATESNEYFITEQRRQSLAEAQSGGDEWEKHG TIGAVARDAEGNIAAGTSTGGITNQMHGRVGDSPLPGCGTFANQSTVAVSCTGIGEAFIK VVAAHQVSDRVRFSGENVEDAATATLDEVAAHHGDGGMIVLPAVGRGVVAYNSEMMNFGY RSAQGGKVQG >gi|316914948|gb|ADCN01000058.1| GENE 8 4452 - 5963 944 503 aa, chain - ## HITS:1 COG:PH0207 KEGG:ns NR:ns ## COG: PH0207 COG1167 # Protein_GI_number: 14590140 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Pyrococcus horikoshii # 136 502 58 424 428 263 36.0 6e-70 MQFTLNRRSTVPMYRQLAAELREQIVSGAMAEGYRLPPERELASRLEVNRTTVLQAYQQL KDEGLIASKVGKGTFVLPLQHIETARIPVVRHEPIDEEPKPSVVRPPWSVLFSDYSNRFT YHDIASAERAQRGDTIIDFATGSPNPADIPDDLLRSVSIEAFESREFDGQPESPIEGFDE LRALLAEHMSTRGVQCDVRNVMVLSGSEQGIDLIVRAFVNPGDCVLVEQSTFFPALQTFR SADARIIGVPVDEHGMRTDLLDGYCARFRPKLIYTVPTFQNPTGTTLPPERRSELIDVAR RYQCLIVEDDAYGDLWYGGESSDAHRPIPLKGMENAGYVMYLSTFSKTVTSGLRTGWVVA DPHVINRLAALRRMVDQHTSTSSQRICLELLKEGRVAEHLRGLIKAYRIRRDAAIAALER YAPDEVYWTVPAGGYYIWVSLPDGVRSLDVLESCRSQGVTFMPGSVFDVDEMDDSHIRLN FVRPDAADIDTGIRIIGETIAQM >gi|316914948|gb|ADCN01000058.1| GENE 9 6021 - 6659 791 212 aa, chain - ## HITS:1 COG:SP1467 KEGG:ns NR:ns ## COG: SP1467 COG0311 # Protein_GI_number: 15901317 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Streptococcus pneumoniae TIGR4 # 25 212 4 188 193 179 48.0 3e-45 MVVAVEYISKEESADAETATHGVTGILAVQGAFAEHAAVLDKLGAPWKLLRAAEDFDESI DRVILPGGESTTQGKLLRSTGLFEPIAAHIKAGKPVLGTCAGMILLAKKLDNDENVYFGA LDAVVRRNAYGRQLGSFQAIADFGQADDPQRIADFPLVFIRGPYVVSVGPEATVETEVDG HVVGLRQGNILATAFHPELTDDVRIHELFLSL >gi|316914948|gb|ADCN01000058.1| GENE 10 6686 - 7561 1503 291 aa, chain - ## HITS:1 COG:SP1468 KEGG:ns NR:ns ## COG: SP1468 COG0214 # Protein_GI_number: 15901318 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 291 1 291 291 413 78.0 1e-115 MTQNRAELNRNLAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRM SDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQF DVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVGLRDDE VYEAAKQLAVPYDLAKYVHDNGRLPVVNFAAGGVATPADAALMMELGAEGVFVGSGIFKS GDPAKRAAAIVKATANWQDADLLAKLSENLGEAMVGINEDEIQTIMAARGE >gi|316914948|gb|ADCN01000058.1| GENE 11 7777 - 8172 292 131 aa, chain - ## HITS:1 COG:lin1448 KEGG:ns NR:ns ## COG: lin1448 COG3655 # Protein_GI_number: 16800516 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Listeria innocua # 55 128 8 75 80 90 64.0 6e-19 MRGKSAVGPRGAGPNRAGPNTEGPNEDSLNIVDSSETGLNTADSNSTGPAGIGHIVLRLD RIMVERGRSLNWLADQVGITNVNLSKIKNNRVSAIRFSALAAICAALDCQPGDILEYVDS ISGDADDANSK >gi|316914948|gb|ADCN01000058.1| GENE 12 8169 - 8795 727 208 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227546320|ref|ZP_03976369.1| ## NR: gi|227546320|ref|ZP_03976369.1| hypothetical protein HMPREF0175_0744 [Bifidobacterium longum subsp. infantis ATCC 55813] # 1 208 1 208 208 345 100.0 1e-93 MATTKKLSFGLDKAGGAALILARIGAALLWIIAALAAVVWVVFLISPRSFAANFGSVDLN VGGAFTLSIKGDLLDYSYNLQNFHDGPVNMVATISTGLARMVVYALLALAFSEMAALCKD LTVWLADGRDATPFQGMVSDRLNRAGWYLIVAPIVGLVNFIVCFLAGTGGNWGLWMSGMM VMIGIILLLIARIFDYGMGLQREVDGLL >gi|316914948|gb|ADCN01000058.1| GENE 13 8956 - 9394 282 146 aa, chain + ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 124 1 124 368 208 96.0 4e-53 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGVEGPVRRRPVDADQPRVPLPVD Prediction of potential genes in microbial genomes Time: Fri May 13 13:37:36 2011 Seq name: gi|316914935|gb|ADCN01000059.1| Bifidobacterium sp. 12_1_47BFAA cont1.59, whole genome shotgun sequence Length of sequence - 8885 bp Number of predicted genes - 18, with homology - 14 Number of transcription units - 15, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 418 187 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 2 Tu 1 . - CDS 717 - 824 71 ## 3 3 Op 1 . + CDS 962 - 1111 180 ## Blon_1374 amino acid permease-associated region 4 3 Op 2 . + CDS 1116 - 1343 248 ## COG0833 Amino acid transporters 5 4 Tu 1 . - CDS 1644 - 2657 1138 ## COG4767 Glycopeptide antibiotics resistance protein 6 5 Op 1 . - CDS 3008 - 3409 227 ## BLD_0490 hypothetical protein 7 5 Op 2 . - CDS 3312 - 3632 140 ## BLD_0491 hypothetical protein 8 5 Op 3 . - CDS 3694 - 4152 220 ## COG4405 Uncharacterized protein conserved in bacteria + Prom 4127 - 4186 2.7 9 6 Tu 1 . + CDS 4292 - 4846 458 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 4957 - 4993 5.0 10 7 Tu 1 . + CDS 5004 - 5186 71 ## BLD_0494 hypothetical protein - Term 5176 - 5204 -0.0 11 8 Tu 1 . - CDS 5227 - 5760 487 ## COG3981 Predicted acetyltransferase 12 9 Tu 1 . - CDS 5896 - 6225 335 ## BLD_0496 hypothetical protein - Prom 6293 - 6352 2.0 13 10 Tu 1 . + CDS 6571 - 6705 83 ## 14 11 Tu 1 . - CDS 6634 - 7440 411 ## Blon_1390 protein of unknown function DUF1526 - Term 7453 - 7489 -0.8 15 12 Tu 1 . - CDS 7603 - 7857 165 ## BLD_0498 hypothetical protein 16 13 Tu 1 . - CDS 7972 - 8091 149 ## 17 14 Tu 1 . + CDS 8191 - 8400 115 ## + Prom 8419 - 8478 1.6 18 15 Tu 1 . + CDS 8728 - 8884 117 ## COG3328 Transposase and inactivated derivatives Predicted protein(s) >gi|316914935|gb|ADCN01000059.1| GENE 1 2 - 418 187 138 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 119 201 312 317 76 42 6e-14 TRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGMATYF ADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRTPAEA FADELLELQDQQGCCTSK >gi|316914935|gb|ADCN01000059.1| GENE 2 717 - 824 71 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNAVPGPMNRFAYMWKLPAYGMATDSSPSETITQ >gi|316914935|gb|ADCN01000059.1| GENE 3 962 - 1111 180 49 aa, chain + ## HITS:1 COG:no KEGG:Blon_1374 NR:ns ## KEGG: Blon_1374 # Name: not_defined # Def: amino acid permease-associated region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 49 316 364 466 81 95.0 1e-14 MVWSLAKERLIPARFAKTNFRGVPVWAVLFSMAGSLLALLSSVLAASTV >gi|316914935|gb|ADCN01000059.1| GENE 4 1116 - 1343 248 75 aa, chain + ## HITS:1 COG:ykfD KEGG:ns NR:ns ## COG: ykfD COG0833 # Protein_GI_number: 16128245 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 2 73 373 444 475 63 43.0 7e-11 MLVAVSGLATLVVWFSVCVCHIRFRREWARDGHSADELDYRAPGFPVLPWLAIVMCIGAL VLVVLDETQRSTLIA >gi|316914935|gb|ADCN01000059.1| GENE 5 1644 - 2657 1138 337 aa, chain - ## HITS:1 COG:L188881 KEGG:ns NR:ns ## COG: L188881 COG4767 # Protein_GI_number: 15673730 # Func_class: V Defense mechanisms # Function: Glycopeptide antibiotics resistance protein # Organism: Lactococcus lactis # 27 213 24 224 354 87 31.0 4e-17 MGFLKNFSEPFAFALALWPFVSMLLTVPVLALLYHRDNRIRLSSAIVAYGTVLYLLGLLC FTLYPMPADAAAYCAAHHLTPQINPLQFIGDIRTDGLTAVLQIAFNIVFFLPLGFIMGRI WRWPLPVTAVLSFATSLFLETMQLTGLMGVFPCAYRLFDVDDLLWNTTGALIGFALAMFS LRLIPARVADTTPTTTPGFMRRLITFIIDMTLIGFAVMPTHLFVMIVQSNLPSGSNGSWQ SMEPFDWTGSILFLAALILFEGVVPWLRGGCTLGGSFTHMTIETRPREGWLRVAFYVARM ATLIAVVWWHSGGFNLLVFIGLGIFWMVKHQMPYDLI >gi|316914935|gb|ADCN01000059.1| GENE 6 3008 - 3409 227 133 aa, chain - ## HITS:1 COG:no KEGG:BLD_0490 NR:ns ## KEGG: BLD_0490 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 37 125 1 89 89 172 97.0 2e-42 MKLRCSCLERGRAPLTPTITLPQSSGTARLKNEDVTVRKVADNRFTIGLASAITMFGHTV RVYDLERTICDLFRSRSTVDPQDLQSAFQNYMRSAHTDLVKLMNYAREFRLVNVMRPYLE AVMPAWFTGEFIL >gi|316914935|gb|ADCN01000059.1| GENE 7 3312 - 3632 140 106 aa, chain - ## HITS:1 COG:no KEGG:BLD_0491 NR:ns ## KEGG: BLD_0491 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 106 1 106 106 187 100.0 9e-47 MSTRATEAESVLKEHMGYLPVSEMERRGVSRTEISRFVREAKLEKAAKGLYVSPNAESDP LFELQYRYPKAIFSHETALFLLGEGASPPDTDDYLTAIIRYGSSQE >gi|316914935|gb|ADCN01000059.1| GENE 8 3694 - 4152 220 152 aa, chain - ## HITS:1 COG:lin2984 KEGG:ns NR:ns ## COG: lin2984 COG4405 # Protein_GI_number: 16802042 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 25 141 39 150 153 85 36.0 3e-17 MSVNTAFETSDLPKAEFMFPGPERDRLVKLILDGVKTATAALMIEYEEEVEPLPCVGAHS VLVDSDERPVAVLVTTAVDVIPLGKVTDRYAIDEGEGDVTAAQWRSAHESFWNSAEYRDE FANPIFPLNDNSLIVFEHFEVEQRLESNNALG >gi|316914935|gb|ADCN01000059.1| GENE 9 4292 - 4846 458 184 aa, chain + ## HITS:1 COG:L117867 KEGG:ns NR:ns ## COG: L117867 COG0454 # Protein_GI_number: 15672512 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Lactococcus lactis # 26 170 10 153 165 58 25.0 7e-09 MTTSDTVLTNRPTMGGMTIRIVSIEPPWFEEKAQVQSCTWRELNQGHIPQEIVDAITPEF ALKLTRSHAKDPNQVVLVALENNHVIGFAELLQTPRSPIKRSEAAELASLYVLESCHRHG VGRALVEAGQRAIGNDRLALWVAGFNTNAQGFYRHIGFHETGLTQTEDMGPELEMINYSD GVFQ >gi|316914935|gb|ADCN01000059.1| GENE 10 5004 - 5186 71 60 aa, chain + ## HITS:1 COG:no KEGG:BLD_0494 NR:ns ## KEGG: BLD_0494 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 60 1 60 60 121 98.0 8e-27 MEQIITLKSGVLEYPWIIRAYLLSRSETQGVELTPFMALRGNPHDYWFLDGDFIDRGEID >gi|316914935|gb|ADCN01000059.1| GENE 11 5227 - 5760 487 177 aa, chain - ## HITS:1 COG:SP0204 KEGG:ns NR:ns ## COG: SP0204 COG3981 # Protein_GI_number: 15900140 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 143 1 143 168 87 35.0 2e-17 MRLIETWLADPERAFDLFAKFPAEETGFENPAAGMNRERFAAYVRGLRDESLGVGLPDGW VPATKYILVNDEGDYVGIFNLRHRLTDFLRNGPGHIGYGVAREYRGHGYATAGLKLTLAK ARELGIKEAYLSVHKTNPASLAVQQHCGARIDHEDKTEYYTRIATCTESDGLYARGD >gi|316914935|gb|ADCN01000059.1| GENE 12 5896 - 6225 335 109 aa, chain - ## HITS:1 COG:no KEGG:BLD_0496 NR:ns ## KEGG: BLD_0496 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 109 1 109 109 163 100.0 1e-39 MNDLLIIDMLPTYGLLFYLLISVFVFVGCRGLRRRTSDRGLLRFAVGAFLVVSALGAVFA ALVYIMAAPLAQPDMVDFYRMYRPGALIFLLGLFIIQFVFGVAAVYRGK >gi|316914935|gb|ADCN01000059.1| GENE 13 6571 - 6705 83 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLQLIAIPTEEMIGENDTHYLFIRLQLVFEHKFHLAVIHQPCV >gi|316914935|gb|ADCN01000059.1| GENE 14 6634 - 7440 411 268 aa, chain - ## HITS:1 COG:no KEGG:Blon_1390 NR:ns ## KEGG: Blon_1390 # Name: not_defined # Def: protein of unknown function DUF1526 # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 268 1 268 268 529 100.0 1e-149 MSRQSNSTTDFLSRTPRKGSPREKALRACITDERLATYNYEAQRRSCPALELYLWDHDMA SACMGDIAILEVALRNRMDRQLSLLALEQNGTEDWYMAGLQFDDRTQYQIREAWNHLTPH QRKNHTHGHLIASLTFGFWRNLLEDGGTIHTKWPDQRRADYENDLWRKGLDKTFSNGRQY ARAVEERWTRKYALDIVKTVHALRNRVAHHEPLVNGIPLPGENRRIALENATQACFALAM ILDRDLHAWLMDNSKMKLVLEHELKPNE >gi|316914935|gb|ADCN01000059.1| GENE 15 7603 - 7857 165 84 aa, chain - ## HITS:1 COG:no KEGG:BLD_0498 NR:ns ## KEGG: BLD_0498 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 84 1 84 84 168 100.0 7e-41 MKVAADPEQVDGTILDGRDYSSGQLPQENIRIIKEADATLRLNLGTQLDALYDRPHKEIT NEGGTLIIIHDADSSEWHFFECLV >gi|316914935|gb|ADCN01000059.1| GENE 16 7972 - 8091 149 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNRVWKGEPSAGGRAGTIIALGIAALVVAGVWFGWTRY >gi|316914935|gb|ADCN01000059.1| GENE 17 8191 - 8400 115 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPPGKSEKRSENYSKPSANPVLNVRDDTQKRSYTRSEEDESPSQPVSKSIDRGFRKALHH RIRSSRALP >gi|316914935|gb|ADCN01000059.1| GENE 18 8728 - 8884 117 52 aa, chain + ## HITS:1 COG:MT0947 KEGG:ns NR:ns ## COG: MT0947 COG3328 # Protein_GI_number: 15840343 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 1 52 71 121 439 58 53.0 4e-09 MTEHLGRAKHKKSKDGRAANTRNGTTAKTVVTDSVGPVRIEVPRDRDGSFEP Prediction of potential genes in microbial genomes Time: Fri May 13 13:38:10 2011 Seq name: gi|316914923|gb|ADCN01000060.1| Bifidobacterium sp. 12_1_47BFAA cont1.60, whole genome shotgun sequence Length of sequence - 7986 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 10, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 8 - 490 209 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 516 - 1028 575 ## pDOJH10L_p08 hypothetical protein + Term 1041 - 1065 -0.3 + Prom 1032 - 1091 6.8 3 2 Tu 1 . + CDS 1326 - 2219 688 ## COG5527 Protein involved in initiation of plasmid replication + Term 2411 - 2449 6.1 4 3 Tu 1 . - CDS 2216 - 2689 291 ## pBLO1_02 mobilization protein MobA 5 4 Tu 1 . + CDS 2966 - 3385 383 ## pDOJH10L_p10 hypothetical protein + Term 3406 - 3430 -0.3 + Prom 3398 - 3457 6.2 6 5 Tu 1 . + CDS 3645 - 4556 1007 ## COG5527 Protein involved in initiation of plasmid replication + Term 4584 - 4625 1.3 - Term 4557 - 4596 7.4 7 6 Tu 1 . - CDS 4607 - 4825 170 ## gi|291516515|emb|CBK70131.1| hypothetical protein - Term 4879 - 4928 5.2 8 7 Tu 1 . - CDS 4930 - 5082 125 ## gi|121489531|emb|CAJ75573.1| hypothetical protein + Prom 5368 - 5427 4.2 9 8 Tu 1 . + CDS 5469 - 5972 349 ## pDOJH10L_p02 MembA + Term 5992 - 6029 7.6 10 9 Tu 1 . - CDS 6036 - 7238 1179 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 7452 - 7511 3.3 + Prom 7408 - 7467 5.9 11 10 Tu 1 . + CDS 7570 - 7984 323 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316914923|gb|ADCN01000060.1| GENE 1 8 - 490 209 160 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 141 176 312 317 85 40 2e-16 GHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTH DNGTEFAHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVR EIVDEINNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK >gi|316914923|gb|ADCN01000060.1| GENE 2 516 - 1028 575 170 aa, chain + ## HITS:1 COG:no KEGG:pDOJH10L_p08 NR:ns ## KEGG: pDOJH10L_p08 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 170 1 170 170 288 98.0 6e-77 MVKSLDEQIKSLQERQAQLKARENDLMARRRERERRARTKRLIEVGAMAESAAGFEGGDE RAKERIARLVQLGSLVEAMCSTDVMDNYTSREDLKTTVTKALEHNVRTSDGMNWNLHDLV YEALSEEWGRRDGEISDLWADDGPSGYQPPSYEPVNPERRTPQTPSDGLI >gi|316914923|gb|ADCN01000060.1| GENE 3 1326 - 2219 688 297 aa, chain + ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 1 221 1 223 286 119 33.0 9e-27 MSNEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVREKGTATVEFSFEELRGLMRLRKNL TNRQLADKIVQTNARLLALNYMFEDSGKIIQFALFTKFVTDPQEATLAVGVNEEFAFLLN DLTSQFTRFELAEFADLKSKYAKEFYRRAKQYRSSGIWKISRDEFCRLLSVPKSTAEQVR DLNKRVLKPIIEECGPLLGLKIERQYVKRRLSGFVFTFARETPPVIDARPVEARKAEDAG HWTSVAGYGEVFTTTELFDVTAARDHFDGTVEAGECRFCAFDARNREHHAQNAGKLF >gi|316914923|gb|ADCN01000060.1| GENE 4 2216 - 2689 291 157 aa, chain - ## HITS:1 COG:no KEGG:pBLO1_02 NR:ns ## KEGG: pBLO1_02 # Name: mobA # Def: mobilization protein MobA # Organism: B.longum # Pathway: not_defined # 1 157 409 565 565 207 79.0 1e-52 MPWLEDADIPADWDQANRFRMRTTKAIYDHDMQPRTRLVAELERRLEQAERAESERPSPE QVKALALRMAEQRAQAENPTQDTKRPAPSGDEPLDLSEPEDWGEASPFESRQAPRTKADL LNEIRQRTDRLTGQREAEQRQIDPWSAQPPQRRGHGR >gi|316914923|gb|ADCN01000060.1| GENE 5 2966 - 3385 383 139 aa, chain + ## HITS:1 COG:no KEGG:pDOJH10L_p10 NR:ns ## KEGG: pDOJH10L_p10 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 127 1 127 139 209 99.0 3e-53 MTRSVEEQMADIERRMKQLRARKQRIVARENAKARKRRTHLIIRLGGILSNEGVLGYDEG VWNDEGNRQRLLDMLKAHAAELRAWASDAGVRLPSAESAGELREQVRDLPQEPQIQEQPG YGYQPGFQQPQQWQQQPWN >gi|316914923|gb|ADCN01000060.1| GENE 6 3645 - 4556 1007 303 aa, chain + ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 1 260 1 250 286 152 36.0 6e-37 MSDEIVKYSNQFNNQALRKFTALDLDLLMAIASRVRDKGTDEVAFTFEELKRLAGLQRNM TNDEFAKQIANVNRRLLALNFEFQNEEHDIIQFALFAGFVTSPTKRTLTVSVNSRFSFLL NDLTSQFTRFELAEFTALRSSYAKECYRRLKQYRQTGVWKVSLEDFRRLLDVPKSYRPSE INKYVLKPIEEELGPLLNLKVHRKYLKKKPGRGRASLVGFEFEFDPEKVPGGAPAPRVEL SGSVVTDEARKSLRDVSKTPVPDLSVPGEGPALDPDTQAFLDAHGGHGFAGAEGYVSDWP SAA >gi|316914923|gb|ADCN01000060.1| GENE 7 4607 - 4825 170 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291516515|emb|CBK70131.1| ## NR: gi|291516515|emb|CBK70131.1| hypothetical protein [Bifidobacterium longum subsp. longum F8] # 1 72 1 72 72 128 100.0 1e-28 MAASGHLEWCQTIVGRLIRIQFSPGSFRRKFTALDLDLLMAVIAVCLAPAVHPIAADIIL TALAVWAMRNSR >gi|316914923|gb|ADCN01000060.1| GENE 8 4930 - 5082 125 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|121489531|emb|CAJ75573.1| ## NR: gi|121489531|emb|CAJ75573.1| hypothetical protein [Bifidobacterium longum] # 1 50 1 50 50 79 100.0 8e-14 MRMGNKGPHGRPWIWLMAVIVICLAPVMDPIAADITVTALAVWAMASSRR >gi|316914923|gb|ADCN01000060.1| GENE 9 5469 - 5972 349 167 aa, chain + ## HITS:1 COG:no KEGG:pDOJH10L_p02 NR:ns ## KEGG: pDOJH10L_p02 # Name: membA # Def: MembA # Organism: B.longum_DJO10A # Pathway: not_defined # 1 167 1 167 167 292 100.0 4e-78 MLRTKHLKMAVVPMTLLALLSTAVPVASAQETTDESFYELTTTPSGGDMIVGEPGTTILF DSSNGELVDVLPPSEAEDYSVTVSRGCADSNAGCWAGGNALGDMQFAGTGTATGSWPYRN SYTTGNKSGQITFAINGVTYTPVAAGPWMRIATADGSGVDGVSVTRW >gi|316914923|gb|ADCN01000060.1| GENE 10 6036 - 7238 1179 400 aa, chain - ## HITS:1 COG:AGl66 KEGG:ns NR:ns ## COG: AGl66 COG0507 # Protein_GI_number: 15890136 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 269 12 259 1277 93 31.0 8e-19 MAIYSLHVSNVSRAAGSSAVASCSYITSRRMRDERTGEAFNGFGRRERVEHVCTMLPEGA PGEYLDPERLFNAVEMAEKRSDARPAKKIMVALPREFDARERFRALEDFISWNITANGYA CTYAIHTDKDGRNPHAHILVANRRIDPKTGRWAAKSRSEFALDANGRRIPVIDPDTGRQK IGARNRKVWKRVNVSNNPLDSKEFLERLRREWADSCNALLPGYAVIDHRSFKARGIERIP TIHEGYASREMEKRGGRGDLCEENRRIQALNRLLDALRAMIGRLSDQAQGILTAVKRRQR PSGAPQAPSSPEPAERPQERPQARETPPQAPQEPPKPIRTKKALTDRFKTRLDERLAENE RKQAEKQAEPDMEETWDLSDPADPLNIGMGWGTGGHGLGL >gi|316914923|gb|ADCN01000060.1| GENE 11 7570 - 7984 323 138 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 138 1 138 358 242 92.0 4e-63 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCP Prediction of potential genes in microbial genomes Time: Fri May 13 13:38:34 2011 Seq name: gi|316914911|gb|ADCN01000061.1| Bifidobacterium sp. 12_1_47BFAA cont1.61, whole genome shotgun sequence Length of sequence - 7524 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 7, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 402 311 ## Blon_0449 integrase, catalytic region 2 1 Op 2 . - CDS 489 - 839 236 ## BL0503 hypothetical protein - Term 1096 - 1127 2.2 3 2 Tu 1 . - CDS 1300 - 1587 378 ## BL0505 hypothetical protein 4 3 Tu 1 . - CDS 1872 - 2474 288 ## BLD_1295 Flp pilus assembly protein 5 4 Op 1 . - CDS 3127 - 4194 332 ## COG4962 Flp pilus assembly protein, ATPase CpaF 6 4 Op 2 . - CDS 4201 - 4713 -15 ## BL0509 hypothetical protein - Term 5287 - 5328 7.0 7 5 Tu 1 . - CDS 5374 - 6099 182 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Term 6144 - 6198 -0.3 8 6 Tu 1 . - CDS 6250 - 6921 866 ## COG0637 Predicted phosphatase/phosphohexomutase 9 7 Tu 1 . - CDS 7042 - 7500 181 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914911|gb|ADCN01000061.1| GENE 1 3 - 402 311 133 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 133 1 133 358 231 92.0 7e-60 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDAL >gi|316914911|gb|ADCN01000061.1| GENE 2 489 - 839 236 116 aa, chain - ## HITS:1 COG:no KEGG:BL0503 NR:ns ## KEGG: BL0503 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 116 13 128 128 197 100.0 1e-49 MAGAMLVMVVGIALAVAASVGNLMICQNRARSLADLIAFDAAYALWHADIGDPCALAANM AEANGVVLGSCSVRDEDVLVTIKVETMVLVASSVERMARAGPVSCTEGDNYHNNGP >gi|316914911|gb|ADCN01000061.1| GENE 3 1300 - 1587 378 95 aa, chain - ## HITS:1 COG:no KEGG:BL0505 NR:ns ## KEGG: BL0505 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 95 37 131 131 159 100.0 3e-38 MNTPIPVIVDGQAGIFAHSKARVATLNAKAKERLCLMDARIRTLMAEPEEGAATAEYAVV LVAATGFAAVLVAILKSDAIKTLLTNIIKQALKVG >gi|316914911|gb|ADCN01000061.1| GENE 4 1872 - 2474 288 200 aa, chain - ## HITS:1 COG:no KEGG:BLD_1295 NR:ns ## KEGG: BLD_1295 # Name: tadC # Def: Flp pilus assembly protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 200 1 200 200 345 98.0 7e-94 MSTVWVHAAAGCAAIASWLYKAPSCHDSRLPGEEPAVAHDCGSSWTILILRMSQVSLRQG SSIPRALDMVGKAVGGDCGARMSEVGRSLTRGVPWADAWHAAMAVQHEGAPADSSSGKRT SRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAAKLSVKLLMPTGL CFLPAFVLVGVIPAIASFMM >gi|316914911|gb|ADCN01000061.1| GENE 5 3127 - 4194 332 355 aa, chain - ## HITS:1 COG:Cgl0301 KEGG:ns NR:ns ## COG: Cgl0301 COG4962 # Protein_GI_number: 19551551 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Flp pilus assembly protein, ATPase CpaF # Organism: Corynebacterium glutamicum # 17 312 54 350 377 192 42.0 1e-48 MAAVITRADEPGAVPRTVFFGLLNDVASDPQVTDLAVTCDGRVWADRGNGMRETVLRVPF RSPQVVREYAVQLCAQLGRRLDDACPIADAASPDGIRVHAVIAPLVPQGAAISIRFPDRT MASLRHLSQLGVFPAAWLPMFVGLVRRHATVLITGGTGVGKTTLLKALLAQCDVNERIVT VEEVRELGELGRGDHVSLVTREANVEGVGAISLTDLVKATLRMRPDRVVLGECRGAEIVD LLRAFNSGHHGGMTTVHADGVNRVPSRLISLGLLAGVSPQALAMLAAGAFDAVVHLERVN GQRRITQIGELRVAHGELAGTPLAVWNGCHPPRYAAEWGHFIERWGIVPGPSGGG >gi|316914911|gb|ADCN01000061.1| GENE 6 4201 - 4713 -15 170 aa, chain - ## HITS:1 COG:no KEGG:BL0509 NR:ns ## KEGG: BL0509 # Name: not_defined # Def: hypothetical protein # Organism: B.longum # Pathway: not_defined # 1 170 147 316 316 327 100.0 7e-89 MWEGVRVLPYDPWSARQPDWWEVQAAIRALAETNDVVIVDAGQGGLIETVPDLRSGMQVI AAELSVMGLARAKSHRSRLDSWGCEAPHIVGVEPRGAPRGRGHVGIGEAQDYLTATVLGP VKPSVNLCGDVLEGLGIRSVTKGSRKAVSLLADLVEQAIRPVSGASCKDR >gi|316914911|gb|ADCN01000061.1| GENE 7 5374 - 6099 182 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 24 220 9 198 199 74 28 2e-13 MGFVNFIIELLKDPRAAIAGWIAMGVAPTLGFIFLIVFIETGVVFFPFLPGDSLLFAAGV FAAPDAATGKAALPLFWLLPVVWCAPIIGDQCNYFIGHFFGRRIIQSGKVKALTPERLAK TEGMIEKWGPLAVFLGRFFPFIRTFMPFISGISGMRWSRFTPFSVLGGLCWSTLFTLLGY FFGNIPAVQDHFELVIVLILLVSLAPTIIGLLKAKFGKKKPAKVTDAQLDVMEDGIKNLD K >gi|316914911|gb|ADCN01000061.1| GENE 8 6250 - 6921 866 223 aa, chain - ## HITS:1 COG:Cgl1470 KEGG:ns NR:ns ## COG: Cgl1470 COG0637 # Protein_GI_number: 19552720 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Corynebacterium glutamicum # 2 219 1 223 231 90 28.0 2e-18 MLLKAVFWDLDGTLIDSEPLWHDGEIEIAHNNGGEWNEDLGWECSGTPVPHVAEVMIAHG CTLSVPEIDKQLKDYVFKAEVERLPWIPGVQDVLHSLKEADIPSMLVTTSPRRMAENIMK QADGLLAGYVCGDDPYEHKPSPAPYLAAAERLGIAPEDMVKCVVMEDSSSGLRSGAASGA TLIAQTGWIRTDTSGLGQFASIDSYEGIDAAALDAFVRQRLGE >gi|316914911|gb|ADCN01000061.1| GENE 9 7042 - 7500 181 152 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 128 192 312 317 74 39 3e-13 CMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVD EALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKL LGYKTPNEVWDEEMAKLQSKQADPKPAVALTS Prediction of potential genes in microbial genomes Time: Fri May 13 13:38:51 2011 Seq name: gi|316914910|gb|ADCN01000062.1| Bifidobacterium sp. 12_1_47BFAA cont1.62, whole genome shotgun sequence Length of sequence - 6149 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 675 - 2204 100.0 # AE014295 [D:159243..160772] # 16S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. + LSU_RRNA 2634 - 5700 99.0 # AE014295 [D:1910860..1913926] # 23S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. 1 1 Tu 1 . - CDS 5691 - 6059 63 ## + 5S_RRNA 5869 - 5988 100.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Predicted protein(s) >gi|316914910|gb|ADCN01000062.1| GENE 1 5691 - 6059 63 122 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGRECFGYAKAPWGVCSKGLPVRVMRRRATLPHPVGCSTIAVPGLSFRVRNGTGRLTWAM AAANLLLYGQTLGSAGLWRPGNRTADADMSMFRLVARQCSLPSGAVCRRKMRSNRQGLEL AS Prediction of potential genes in microbial genomes Time: Fri May 13 13:38:59 2011 Seq name: gi|316914904|gb|ADCN01000063.1| Bifidobacterium sp. 12_1_47BFAA cont1.63, whole genome shotgun sequence Length of sequence - 2793 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 349 281 ## Blon_1662 integrase, catalytic region + Prom 481 - 540 4.5 2 2 Op 1 . + CDS 576 - 1223 1093 ## BLD_0421 hypothetical protein 3 2 Op 2 . + CDS 1223 - 1924 892 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 4 2 Op 3 . + CDS 1924 - 2259 257 ## BL0693 ATP binding protein of ABC transporter + Term 2399 - 2425 0.1 5 3 Tu 1 . - CDS 2209 - 2715 207 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914904|gb|ADCN01000063.1| GENE 1 1 - 349 281 116 aa, chain - ## HITS:1 COG:no KEGG:Blon_1662 NR:ns ## KEGG: Blon_1662 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 115 1 115 368 190 96.0 1e-47 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRV >gi|316914904|gb|ADCN01000063.1| GENE 2 576 - 1223 1093 215 aa, chain + ## HITS:1 COG:no KEGG:BLD_0421 NR:ns ## KEGG: BLD_0421 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_DJO10A # Pathway: not_defined # 1 215 1 215 215 365 100.0 1e-100 MTAPNTPAETSDQLNKPAKSGKLEVSDLITIGVFAALYFVMVCIATLVSTLFTGGFGSIF LPAITALISGCVYMLLAARLGKFGGITVMGVIIGLFLFISGHFVLSFIASIVFPVAADLI ARAGKYKSKALLLVSYVVFSYGLTGPILPLWFMKDAYVASLQARGKDAAYIDGVFVNINT GTFFISMIAILVCAVLGGWFGQRMMKKHFIKAGIA >gi|316914904|gb|ADCN01000063.1| GENE 3 1223 - 1924 892 233 aa, chain + ## HITS:1 COG:SPy1788 KEGG:ns NR:ns ## COG: SPy1788 COG0619 # Protein_GI_number: 15675627 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Streptococcus pyogenes M1 GAS # 8 217 3 212 226 92 29.0 5e-19 MNPARRTLDPRAKLYLLLVANLMLFFHVGLATQIVMVVLFLLPLLAAARWRTALNFGVTY AVLTALGMLDPDALGLPWLHVVSALAVGVTMMLPCFITGAYTFTTTSASAFICAMRRMRV PEAVVIPCVVVIRFFPTIAEDYRQIRNAMALRGIASGGWGLVRHPAQSLEYILIPLLMNA TNVAQDLSVAALTKGLGREGEHTSRTLIRMTVVDWLVMIVVTLPLALDIAGVI >gi|316914904|gb|ADCN01000063.1| GENE 4 1924 - 2259 257 111 aa, chain + ## HITS:1 COG:no KEGG:BL0693 NR:ns ## KEGG: BL0693 # Name: not_defined # Def: ATP binding protein of ABC transporter # Organism: B.longum # Pathway: ABC transporters [PATH:blo02010] # 1 93 1 93 537 187 100.0 1e-46 MGGNQSQPNATAIIGTGKGGPLDTSAGTIASRGISFTYDHAAEPALRDITLTVPAGECIV LCGASGCGKTSYTRVANGLIPSFFHGAFAGNQTPDSICKRNACVRAGCLRL >gi|316914904|gb|ADCN01000063.1| GENE 5 2209 - 2715 207 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 1 144 176 312 317 84 39 1e-16 GHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSASATARAEYEIFKGMPPAARVD RTWDNGTEASLHVLVDEALGMLTYFADPYSSWQRGSNENRNGRIRRYLPKGTSFEDLTQD ELDAIVGEINDTPMKLLGYKTPNEVWDEEIAKLQSKAASPNTSVALTN Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:08 2011 Seq name: gi|316914901|gb|ADCN01000064.1| Bifidobacterium sp. 12_1_47BFAA cont1.64, whole genome shotgun sequence Length of sequence - 1835 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 399 195 ## Blon_0449 integrase, catalytic region - Prom 434 - 493 2.2 2 2 Tu 1 . + CDS 720 - 1757 1099 ## COG1073 Hydrolases of the alpha/beta superfamily Predicted protein(s) >gi|316914901|gb|ADCN01000064.1| GENE 1 3 - 399 195 132 aa, chain - ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 112 1 112 358 189 92.0 2e-47 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWRGPRLVAAAH QRQAARPVAGRC >gi|316914901|gb|ADCN01000064.1| GENE 2 720 - 1757 1099 345 aa, chain + ## HITS:1 COG:L15267 KEGG:ns NR:ns ## COG: L15267 COG1073 # Protein_GI_number: 15673556 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Lactococcus lactis # 43 341 25 317 320 168 33.0 2e-41 MTRSDDVINEDGHDVIATHTRVVRGMAAALAAIAATGAGVTAAAANVMFTFALDTKAKRS MFNMPHEETPKGIEFDMSEQLEAARWFEEAKQSVTLRSHDGLKLHGWLLDPDCSDPQPHL YAICCHGYAGEPAEMAKWAHRYAQLGFTVLLPAQRAHELSEGRYVGMGLLESDDLLGWVS LITAADPDARILLHGNSMGAATVMMAAGDARLPRNVIAAISDCGYSSVVSQFTDNAEEMF RLPHSLAALLVKVASHVSKRKAGYRFEDASCVKALRHATIPMMFIHGGADTFVNPKYLDI NYNACASIDREKLLIPGADHTMSASTDPDRYWRRVNSFVKRVFGL Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:11 2011 Seq name: gi|316914898|gb|ADCN01000065.1| Bifidobacterium sp. 12_1_47BFAA cont1.65, whole genome shotgun sequence Length of sequence - 1511 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 31 - 1137 271 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase 2 1 Op 2 . + CDS 1225 - 1510 202 ## Blon_0449 integrase, catalytic region Predicted protein(s) >gi|316914898|gb|ADCN01000065.1| GENE 1 31 - 1137 271 368 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 7 344 11 312 317 108 29 2e-24 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGRLKAQCAGDPSMRISHECLYQWIYAKPQRALDLRQYLARGRKRRTRKKGRKAKGPR IPMRVPIADRPEAVGSRKGFGHFESDTVVGAAPSRRCMNTQVERRSRRLFARLVDDKSAS ATARAEYEIFKGMPPAARVDRTWDNGTEASLHVLVDEALGMLTYFADPYSSWQRGSNENR NGRIRRYLPKGTSFEDLTQDELDAIVGEINDTPMKLLGYKTPNEVWDEEMAKLQSKQADP KPAVALTS >gi|316914898|gb|ADCN01000065.1| GENE 2 1225 - 1510 202 95 aa, chain + ## HITS:1 COG:no KEGG:Blon_0449 NR:ns ## KEGG: Blon_0449 # Name: not_defined # Def: integrase, catalytic region # Organism: B.longum_infantis_ATCC15697 # Pathway: not_defined # 1 95 1 95 358 161 93.0 8e-39 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKP Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:14 2011 Seq name: gi|316914895|gb|ADCN01000066.1| Bifidobacterium sp. 12_1_47BFAA cont1.66, whole genome shotgun sequence Length of sequence - 1479 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 66 - 581 253 ## BLD_0318 transposase 2 1 Op 2 . + CDS 578 - 1435 577 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|316914895|gb|ADCN01000066.1| GENE 1 66 - 581 253 171 aa, chain + ## HITS:1 COG:no KEGG:BLD_0318 NR:ns ## KEGG: BLD_0318 # Name: not_defined # Def: transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 171 1 171 171 203 69.0 3e-51 MSRKRRGSYDVEYMRIVVGLIRDGIGAKSLARRLGVSKETTREWLLSYRIGGEAALMGER EGNRKYDYETKLAAVLDHLERGMSRPEVMERYGIASRTCLKQWCQDYRRGGPEALRPKPK GRPKGAKSKPKPAPTREQLLEEENAYLKARVAYLEKARALLASKPTTGRSR >gi|316914895|gb|ADCN01000066.1| GENE 2 578 - 1435 577 285 aa, chain + ## HITS:1 COG:yi5B KEGG:ns NR:ns ## COG: yi5B COG2801 # Protein_GI_number: 16131429 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 11 282 11 278 283 207 41.0 2e-53 MIVSTLAGLGHPLRCLLKIAGLARSTYYYLLSHPEPVTRPDIEPMVAEVFHRTPNGCGHR QVRMCLVYEFGVRVSHKSVLRVMRRMGLKCAIRRPNPYRRYSSYQGDTGAKPPNLLERDF AADRPWVKLGTDVTEFRAAGGKAYLAPIYDMGSKEIVAWDVSRHPDLAQQQRLLAMLEEK LPEGADPILHSDMGWQYQHDWWRNRLGELGIRQSMSRKGNCIDNAATEQVFGHLKDEFYT GREFASYEEFKSELDAYIIHWNTRRRQIRLEGHTPEEFRNMSLTA Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:18 2011 Seq name: gi|316914893|gb|ADCN01000067.1| Bifidobacterium sp. 12_1_47BFAA cont1.67, whole genome shotgun sequence Length of sequence - 1411 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 78 - 1265 203 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914893|gb|ADCN01000067.1| GENE 1 78 - 1265 203 395 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 60 389 1 315 317 82 25 1e-16 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHPRYLSQEERIQIADRLRLGDSIRAIARLLGRDPGTVSREVERNRNPESGGYEP YRAQQKAADRLKRPKPRKAAEGTRLWDEIAAGLRRHWSPEQIANRLRLDFPDNGDMHASV ETIYQAIYLQARGELKQELKRAMRQGRTARRPQGGQGRKPRFREPMAMISERPPEIEDRA VPGHWEGDLITGSRNKSAIGTLVERTTRFTILLHLPDGHDAEHVQQAIIDKMQHLPKLLR NSLTWDQGAELALHKRIGASLDMAVYFCDPHSPWQRGTNENTNGLLRQYFPKGTDLSVYP EDYLDAVAEELNDRPRKTLGFMKPSEKIIELLDAA Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:19 2011 Seq name: gi|316914890|gb|ADCN01000068.1| Bifidobacterium sp. 12_1_47BFAA cont1.68, whole genome shotgun sequence Length of sequence - 1224 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 1 - 742 369 ## COG2826 Transposase and inactivated derivatives, IS30 family 2 1 Op 2 . - CDS 771 - 1184 196 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914890|gb|ADCN01000068.1| GENE 1 1 - 742 369 247 aa, chain - ## HITS:1 COG:Ztra8.2 KEGG:ns NR:ns ## COG: Ztra8.2 COG2826 # Protein_GI_number: 15802345 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Escherichia coli O157:H7 EDL933 # 6 223 71 271 396 88 34.0 1e-17 MGEVYSHLSEEERQVIQIEVGNGASIRGIGAMLGRSPSSISREIKRNTWFPSNENESYRP YRPKRLKAGPWTGRYYIAGPAQRKADRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLI SGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLPRGHRRRRRHGGRRTSRFPIP GRVPISERPPEADGRSAFGHWEADSVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGA QLDMFSP >gi|316914890|gb|ADCN01000068.1| GENE 2 771 - 1184 196 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 2 125 198 314 317 80 42 8e-16 MERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEFAHHERLRDGLGM ATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNRPMRVLGYRT PARCLNESATPVRLEIA Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:19 2011 Seq name: gi|316914889|gb|ADCN01000069.1| Bifidobacterium sp. 12_1_47BFAA cont1.69, whole genome shotgun sequence Length of sequence - 1015 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 241 - 358 100.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:20 2011 Seq name: gi|316914887|gb|ADCN01000070.1| Bifidobacterium sp. 12_1_47BFAA cont1.70, whole genome shotgun sequence Length of sequence - 1006 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 182 - 1006 230 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase Predicted protein(s) >gi|316914887|gb|ADCN01000070.1| GENE 1 182 - 1006 230 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 50 255 115 312 317 93 35 7e-20 GDRRRSKPRKPYRLSHDRLWAQVAEWLGRGWSPLLISGRLRVLWPDDALMRVCPETIYRW VYSSRPLRERWARCLPRGHRRRRRHGGRRTSRFPIPGRVPISERPPEADGRSAFGHWEAD SVIGVGCNLHTEVERRTRFLMARIVPDKTAGESVGAQLDMFSPLPAGARVSVTHDNGTEF AHHERLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEI NNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:21 2011 Seq name: gi|316914885|gb|ADCN01000071.1| Bifidobacterium sp. 12_1_47BFAA cont1.71, whole genome shotgun sequence Length of sequence - 994 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 756 - 993 196 ## BLJ_0496 integrase catalytic subunit Predicted protein(s) >gi|316914885|gb|ADCN01000071.1| GENE 1 756 - 993 196 79 aa, chain + ## HITS:1 COG:no KEGG:BLJ_0496 NR:ns ## KEGG: BLJ_0496 # Name: not_defined # Def: integrase catalytic subunit # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 1 79 1 79 368 153 98.0 2e-36 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYS Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:23 2011 Seq name: gi|316914883|gb|ADCN01000072.1| Bifidobacterium sp. 12_1_47BFAA cont1.72, whole genome shotgun sequence Length of sequence - 929 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 80 - 499 325 ## COG3508 Homogentisate 1,2-dioxygenase + Term 666 - 706 -0.9 Predicted protein(s) >gi|316914883|gb|ADCN01000072.1| GENE 1 80 - 499 325 139 aa, chain + ## HITS:1 COG:RSp0691 KEGG:ns NR:ns ## COG: RSp0691 COG3508 # Protein_GI_number: 17548912 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Homogentisate 1,2-dioxygenase # Organism: Ralstonia solanacearum # 1 139 310 448 448 251 86.0 3e-67 MLQSPFATPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEFMGLIQGVYDAKAEGFVP GGASLHNCMSGHGPDAETFEKASNGDTSKPHKVDATMAFMFETPAVIRPTRFAAESAQLQ AKYFECWQGLKKHFDPTKR Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:24 2011 Seq name: gi|316914880|gb|ADCN01000073.1| Bifidobacterium sp. 12_1_47BFAA cont1.73, whole genome shotgun sequence Length of sequence - 840 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 1 - 276 339 ## COG2826 Transposase and inactivated derivatives, IS30 family 2 1 Op 2 . + CDS 360 - 840 448 ## COG2826 Transposase and inactivated derivatives, IS30 family Predicted protein(s) >gi|316914880|gb|ADCN01000073.1| GENE 1 1 - 276 339 91 aa, chain + ## HITS:1 COG:NMB0225 KEGG:ns NR:ns ## COG: NMB0225 COG2826 # Protein_GI_number: 15676151 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Neisseria meningitidis MC58 # 2 74 240 312 321 77 45.0 8e-15 KRLRDGLGMATYFADPYSSWQRGSNENRNGMIRRYLPKRCEIRMDMAKEVREIVDEINNR PMRVLGYRTPAEAFADELLELQDQQGCCTSK >gi|316914880|gb|ADCN01000073.1| GENE 2 360 - 840 448 160 aa, chain + ## HITS:1 COG:Cgl0182 KEGG:ns NR:ns ## COG: Cgl0182 COG2826 # Protein_GI_number: 19551432 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Corynebacterium glutamicum # 4 155 203 330 536 65 32.0 3e-11 MGQQYSHLSSEERILIEKLHCEQHLSIRRTAERIGRDKSTVSRELRRGLWFASNENGSYR PYRPKRLKTGPWTSGPFYSALAAQRKADLRRRGSRKPRRMDSGPLRAWVLDALRRGWSPE LIEGRLKAQCAGDPSMRISHECLYQWIYAKPQRALDLRQY Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:25 2011 Seq name: gi|316914878|gb|ADCN01000074.1| Bifidobacterium sp. 12_1_47BFAA cont1.74, whole genome shotgun sequence Length of sequence - 835 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 313 75 ## DMR_45190 hypothetical protein 2 1 Op 2 . - CDS 267 - 737 347 ## COG5556 Uncharacterized conserved protein Predicted protein(s) >gi|316914878|gb|ADCN01000074.1| GENE 1 1 - 313 75 104 aa, chain - ## HITS:1 COG:no KEGG:DMR_45190 NR:ns ## KEGG: DMR_45190 # Name: not_defined # Def: hypothetical protein # Organism: D.magneticus # Pathway: not_defined # 17 104 38 118 488 65 38.0 8e-10 MELCLHERQTEAFLTEATELLYGGAAGGGKSHLMRVASIAWCVDIPGLQVYIFRRLSDDL HKNHMEGHSGFPALLSEWIEGGHAKINWSKNFIEFWNGSKIHLC >gi|316914878|gb|ADCN01000074.1| GENE 2 267 - 737 347 156 aa, chain - ## HITS:1 COG:YPO2102 KEGG:ns NR:ns ## COG: YPO2102 COG5556 # Protein_GI_number: 16122341 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 1 142 1 142 149 151 53.0 6e-37 MATLTDDVKAFIVQALACFDTPHQVSDAVKEQFGLTVSRQQCEAYDPSKKIGAALSKKWR ELFEETRKQFLAETGSIPIANQAYRLRVLNRLLVKAEKQGNVAMVSQLLEQAAKEAGGTF TNKHRLEHSGEVKTPELRLVLNGTLPTRAPDGGVSN Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:27 2011 Seq name: gi|316914876|gb|ADCN01000075.1| Bifidobacterium sp. 12_1_47BFAA cont1.75, whole genome shotgun sequence Length of sequence - 819 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 206 219 ## BLD_0058 IS30 family transposase - 5S_RRNA 647 - 764 96.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Predicted protein(s) >gi|316914876|gb|ADCN01000075.1| GENE 1 2 - 206 219 68 aa, chain - ## HITS:1 COG:no KEGG:BLD_0058 NR:ns ## KEGG: BLD_0058 # Name: not_defined # Def: IS30 family transposase # Organism: B.longum_DJO10A # Pathway: not_defined # 1 68 29 96 423 133 100.0 2e-30 MCEARRAEYVRLLDEEGMNFTQAAHAVGVSKRTGKAWRNGRTRATGRNEKPLVDWYRSTM DKPKTLHP Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:30 2011 Seq name: gi|316914874|gb|ADCN01000076.1| Bifidobacterium sp. 12_1_47BFAA cont1.76, whole genome shotgun sequence Length of sequence - 762 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 755 583 ## Rpic_3043 hypothetical protein Predicted protein(s) >gi|316914874|gb|ADCN01000076.1| GENE 1 2 - 755 583 251 aa, chain - ## HITS:1 COG:no KEGG:Rpic_3043 NR:ns ## KEGG: Rpic_3043 # Name: not_defined # Def: hypothetical protein # Organism: R.pickettii # Pathway: not_defined # 1 251 1 247 447 395 86.0 1e-109 MPERNRPPFRGLTGAIAGSTTSAQAVTGDNPEDTPGGAREPMSGGRPNTARDAAAQDLAS DTALWRFALAAENGGRGPHPDAALRDDLSILRILRGADGLRLLRQGLRSAFPGAALRLTT FWPEEQPHAYPARAEARPAEFGDLLVLFRLRGAVPTLDCRALFLTARRIDQPDDALDKHH TLPQINLYEGWPDFNVYARSPIKSRNAAFLGKFDLSAELEPLRRIGRDQRQWRYLTPCTG LQAHSQWPGAR Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:34 2011 Seq name: gi|316914873|gb|ADCN01000077.1| Bifidobacterium sp. 12_1_47BFAA cont1.77, whole genome shotgun sequence Length of sequence - 723 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:34 2011 Seq name: gi|316914872|gb|ADCN01000078.1| Bifidobacterium sp. 12_1_47BFAA cont1.78, whole genome shotgun sequence Length of sequence - 635 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 281 - 400 100.0 # AE014295 [D:164437..164556] # 5S ribosomal RNA # Bifidobacterium longum NCC2705 # Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:35 2011 Seq name: gi|316914869|gb|ADCN01000079.1| Bifidobacterium sp. 12_1_47BFAA cont1.79, whole genome shotgun sequence Length of sequence - 606 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 7/0.000 + CDS 1 - 285 261 ## COG0159 Tryptophan synthase alpha chain 2 1 Op 2 . + CDS 323 - 605 280 ## COG0777 Acetyl-CoA carboxylase beta subunit Predicted protein(s) >gi|316914869|gb|ADCN01000079.1| GENE 1 1 - 285 261 94 aa, chain + ## HITS:1 COG:RSc1981 KEGG:ns NR:ns ## COG: RSc1981 COG0159 # Protein_GI_number: 17546700 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase alpha chain # Organism: Ralstonia solanacearum # 1 94 172 265 265 159 95.0 2e-39 GYIYYVSLKGVTGAATIDLDAVAARIPQIRQHARLPVGVGFGIRDAATARAIGGVADAVV IGSRIVQLLEEAPREQAVQCLTDFIAEIRQALDA >gi|316914869|gb|ADCN01000079.1| GENE 2 323 - 605 280 94 aa, chain + ## HITS:1 COG:RSc1980 KEGG:ns NR:ns ## COG: RSc1980 COG0777 # Protein_GI_number: 17546699 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Ralstonia solanacearum # 1 94 1 94 290 198 95.0 2e-51 MSWLDKLLPPKIQQTDPSQRKGIPEGLWIKCPACESVLYRTDIEANLHVCPKCDHHMRIG ARARLDALLDAEGRYELGQEILPVDPLKFKDSKK Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:35 2011 Seq name: gi|316914867|gb|ADCN01000080.1| Bifidobacterium sp. 12_1_47BFAA cont1.80, whole genome shotgun sequence Length of sequence - 571 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:36 2011 Seq name: gi|316914865|gb|ADCN01000081.1| Bifidobacterium sp. 12_1_47BFAA cont1.81, whole genome shotgun sequence Length of sequence - 520 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 518 303 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) Predicted protein(s) >gi|316914865|gb|ADCN01000081.1| GENE 1 2 - 518 303 172 aa, chain + ## HITS:1 COG:RSc1120_2 KEGG:ns NR:ns ## COG: RSc1120_2 COG2333 # Protein_GI_number: 17545839 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Ralstonia solanacearum # 1 172 15 186 285 226 69.0 2e-59 AALVETASHRLLFDTGPRYDDHADAAARVVTPYLRGHGVEALDTLVVSHEDSDHAGGTET VIEAVPVRTMLASLPRGHALRETAEERDIHFTDCLAGQVWTWDEVVFEVLHPMRLPAEGE RVASNARSCVLRISNGRHAALLTGDIEAPQEAALVAGETPERLMADILLVPH Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:37 2011 Seq name: gi|316914863|gb|ADCN01000082.1| Bifidobacterium sp. 12_1_47BFAA cont1.82, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 149 - 515 224 ## COG0732 Restriction endonuclease S subunits Predicted protein(s) >gi|316914863|gb|ADCN01000082.1| GENE 1 149 - 515 224 122 aa, chain + ## HITS:1 COG:CC0621 KEGG:ns NR:ns ## COG: CC0621 COG0732 # Protein_GI_number: 16124874 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Caulobacter vibrioides # 4 122 79 199 450 59 29.0 2e-09 MISEKGAATLTLYPSDSIVIVARSGILRHTIPVAKLRKPATVNQDIKVIQTVDSCDSSWL LQYFIASNKTLLREYGKTGTTVESIDFAKMKSTALMVPYIEEQQAIGSFFSRLDNLITLH QR Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:37 2011 Seq name: gi|316914861|gb|ADCN01000083.1| Bifidobacterium sp. 12_1_47BFAA cont1.83, whole genome shotgun sequence Length of sequence - 507 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 506 678 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Predicted protein(s) >gi|316914861|gb|ADCN01000083.1| GENE 1 2 - 506 678 168 aa, chain + ## HITS:1 COG:RSc1521 KEGG:ns NR:ns ## COG: RSc1521 COG0458 # Protein_GI_number: 17546240 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Ralstonia solanacearum # 9 168 395 554 1081 305 96.0 2e-83 KSVASDGHGRTFQESFQKALRGLEVGVDGLDEKSTDRDEIIEEIGEAGPDRIWYLGDAFR LGLSIDEVYSETAVDPWFLAQIEDIVKTEALVKARTLDSLSAAELRLLKQKGFSDRRLAK LMKTTAQAVREKRIAEKVRPVYKRVDTCAAEFATNTAYLYSTYEAEHG Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:38 2011 Seq name: gi|316914859|gb|ADCN01000084.1| Bifidobacterium sp. 12_1_47BFAA cont1.84, whole genome shotgun sequence Length of sequence - 505 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 503 494 ## CV_0707 hypothetical protein Predicted protein(s) >gi|316914859|gb|ADCN01000084.1| GENE 1 2 - 503 494 167 aa, chain - ## HITS:1 COG:no KEGG:CV_0707 NR:ns ## KEGG: CV_0707 # Name: not_defined # Def: hypothetical protein # Organism: C.violaceum # Pathway: not_defined # 1 162 324 472 544 154 53.0 1e-36 MDNTSDAWVRDVVGDNFTSGLILGSKASRLTVTQVALTHENNGADVPCTGAKFAEISVGG SQVLVDRTSSTGAAASFYYATAARVPGPNVLLNFKGTPDGVCGSSSIQPHQRWATGLLID GATLAANPVSGNSYSIDLSNRGTAGSGQGWAIGWGVVWNSTATFNIQ Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:41 2011 Seq name: gi|316914857|gb|ADCN01000085.1| Bifidobacterium sp. 12_1_47BFAA cont1.85, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 51 - 494 231 ## gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 Predicted protein(s) >gi|316914857|gb|ADCN01000085.1| GENE 1 51 - 494 231 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|227547387|ref|ZP_03977436.1| ## NR: gi|227547387|ref|ZP_03977436.1| hypothetical protein HMPREF0175_1811 [Bifidobacterium longum subsp. infantis ATCC 55813] # 91 147 1 57 57 115 100.0 7e-25 MNASSRSAANSRLSRATARVTVDRETSAPCSSLNRSQILVAVCRCLRQFARSSASHCSIT GRYGSITDARGFLTDGTADRSSFARYLRTVGSLTCVFRAIDATDSPFRRKRRIDCTWGML IIILSGPFWRRYKHHPVKTIPWSACSA Prediction of potential genes in microbial genomes Time: Fri May 13 13:39:48 2011 Seq name: gi|316914855|gb|ADCN01000086.1| Bifidobacterium sp. 12_1_47BFAA cont1.86, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 0