Prediction of potential genes in microbial genomes Time: Fri May 13 05:17:48 2011 Seq name: gi|301349849|gb|ADCQ01000001.1| Burkholderiales bacterium 1_1_47 cont1.1, whole genome shotgun sequence Length of sequence - 45504 bp Number of predicted genes - 41, with homology - 40 Number of transcription units - 22, operones - 10 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 5 - 256 343 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein 2 2 Tu 1 . - CDS 282 - 1025 708 ## COG0165 Argininosuccinate lyase - Prom 1069 - 1128 2.7 3 3 Op 1 3/0.167 - CDS 1226 - 2116 763 ## COG3643 Glutamate formiminotransferase 4 3 Op 2 . - CDS 2136 - 3350 352 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase 5 3 Op 3 . - CDS 3415 - 4392 950 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 4442 - 4501 3.8 + Prom 4488 - 4547 3.5 6 4 Tu 1 . + CDS 4570 - 5538 314 ## COG0583 Transcriptional regulator + Term 5602 - 5654 15.2 - Term 5595 - 5636 7.3 7 5 Tu 1 . - CDS 5666 - 6982 1631 ## COG2704 Anaerobic C4-dicarboxylate transporter - Prom 7193 - 7252 2.3 8 6 Op 1 . - CDS 7361 - 8761 893 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 9 6 Op 2 8/0.167 - CDS 8761 - 9408 324 ## COG4566 Response regulator 10 6 Op 3 . - CDS 9418 - 11214 558 ## COG0642 Signal transduction histidine kinase 11 6 Op 4 . - CDS 11285 - 13087 2411 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 12 6 Op 5 . - CDS 13120 - 14031 1211 ## COG0710 3-dehydroquinate dehydratase - Prom 14054 - 14113 2.0 - Term 14119 - 14159 -0.5 13 7 Op 1 . - CDS 14220 - 14990 334 ## blr4068 hypothetical protein 14 7 Op 2 . - CDS 15027 - 16400 1236 ## COG0534 Na+-driven multidrug efflux pump 15 8 Tu 1 . - CDS 16536 - 18899 1530 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 18973 - 19032 4.9 + Prom 18975 - 19034 5.7 16 9 Tu 1 . + CDS 19096 - 19515 428 ## VPA0976 hypothetical protein - Term 19502 - 19542 3.3 17 10 Tu 1 . - CDS 19564 - 21054 1936 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 21116 - 21175 3.6 + Prom 21052 - 21111 3.8 18 11 Op 1 . + CDS 21354 - 21773 150 ## gi|302861100|gb|EFL84174.1| hypothetical protein HMPREF0189_02317 19 11 Op 2 . + CDS 21763 - 22443 254 ## Veis_1419 hypothetical protein + Term 22652 - 22686 1.2 + Prom 22536 - 22595 4.4 20 12 Tu 1 . + CDS 22716 - 24053 1795 ## COG0137 Argininosuccinate synthase + Term 24067 - 24123 12.2 - Term 24063 - 24103 2.0 21 13 Op 1 8/0.167 - CDS 24160 - 25047 635 ## COG3301 Formate-dependent nitrite reductase, membrane component 22 13 Op 2 16/0.000 - CDS 25044 - 25622 490 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 23 13 Op 3 . - CDS 25626 - 28202 2011 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 28361 - 28420 6.1 + Prom 28705 - 28764 3.5 24 14 Op 1 8/0.167 + CDS 28788 - 30575 612 ## COG0642 Signal transduction histidine kinase 25 14 Op 2 . + CDS 30572 - 31186 599 ## COG4566 Response regulator 26 14 Op 3 . + CDS 31179 - 32606 827 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 32752 - 32811 7.4 27 15 Tu 1 . + CDS 32838 - 32984 89 ## 28 16 Tu 1 . - CDS 33005 - 33370 183 ## LA_0562 hypothetical protein - Prom 33543 - 33602 13.6 - Term 33575 - 33604 0.4 29 17 Op 1 . - CDS 33624 - 34661 1096 ## COG2008 Threonine aldolase - Term 34699 - 34726 1.5 30 17 Op 2 . - CDS 34744 - 36207 1786 ## COG0260 Leucyl aminopeptidase - Prom 36237 - 36296 2.8 - Term 36300 - 36346 8.1 31 18 Tu 1 . - CDS 36371 - 37273 871 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 37293 - 37352 4.7 + Prom 37320 - 37379 2.9 32 19 Op 1 . + CDS 37437 - 38843 1193 ## COG0277 FAD/FMN-containing dehydrogenases 33 19 Op 2 . + CDS 38891 - 40042 1282 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 34 19 Op 3 . + CDS 40042 - 40467 161 ## BLJ_1338 hypothetical protein + Prom 40544 - 40603 3.2 35 20 Op 1 . + CDS 40623 - 41387 605 ## COG2755 Lysophospholipase L1 and related esterases 36 20 Op 2 . + CDS 41415 - 41834 292 ## COG4925 Uncharacterized conserved protein 37 20 Op 3 . + CDS 41840 - 42784 633 ## COG2768 Uncharacterized Fe-S center protein 38 20 Op 4 . + CDS 42803 - 43375 696 ## COG0716 Flavodoxins + Term 43388 - 43421 5.4 - Term 43364 - 43419 12.3 39 21 Op 1 . - CDS 43442 - 44491 1441 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Term 44544 - 44595 1.0 40 21 Op 2 . - CDS 44603 - 44740 198 ## gi|212702587|ref|ZP_03310715.1| hypothetical protein DESPIG_00613 + Prom 45264 - 45323 9.3 41 22 Tu 1 . + CDS 45343 - 45502 154 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 Predicted protein(s) >gi|301349849|gb|ADCQ01000001.1| GENE 1 5 - 256 343 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 83 513 595 595 158 92.0 1e-37 MRENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAG PETPEEVPEEPEIEPLLGTDIEI >gi|301349849|gb|ADCQ01000001.1| GENE 2 282 - 1025 708 247 aa, chain - ## HITS:1 COG:MJ0791 KEGG:ns NR:ns ## COG: MJ0791 COG0165 # Protein_GI_number: 15668974 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Methanococcus jannaschii # 7 242 6 236 484 164 39.0 1e-40 MIQGNNRGKIKQPPAKEVIKYIINPSISDAEAERSFQNYVECNKAHVLMLEKQGIIKKEV AKKILEVAEEMTAMGSKPSFALRPELEEMYFNLENYLISKVGIEVGGQQHTARSRNDLYA TVVRMDVRKFYLEVCELYNEMRKTIQQVARNNTDAVMAGYTHLQPSEPITFAQYCAAILY GMDRDYQRIQNAWEQLNLCPLGGGSMGSTTWKIDRQFTSELLGFNAPLGNSIDAVGSRAD ILRFSVI >gi|301349849|gb|ADCQ01000001.1| GENE 3 1226 - 2116 763 296 aa, chain - ## HITS:1 COG:SPy2083 KEGG:ns NR:ns ## COG: SPy2083 COG3643 # Protein_GI_number: 15675841 # Func_class: E Amino acid transport and metabolism # Function: Glutamate formiminotransferase # Organism: Streptococcus pyogenes M1 GAS # 1 296 1 297 299 303 47.0 3e-82 MTKLVEFIPNFSEGRRQEVIDQISEAAQSVPGAKLINVNVEPSYNRCVHTVVGDPEAVLE AGFRMCQKAVELIDMNHHKGEHPRIGAVDASPFIPLEDMTAEECVDLCNRLGERVAKELQ VPVYLYEKAAKRLERVKLQNIRHPEYEGLLELIDKPEWAPDYGEAKMHPTAGAMPLGVRN PMVAFNISLNTSDVAIAKKIAQSFREAKGGYAEARAIGVYLEDRNICQVSCMINPQIVPL YRIIEMVRSEAKRYGLSIIGTDICGMVSQSTLMDCCEYYMQLENFDRKAQILEELL >gi|301349849|gb|ADCQ01000001.1| GENE 4 2136 - 3350 352 404 aa, chain - ## HITS:1 COG:SPy2084 KEGG:ns NR:ns ## COG: SPy2084 COG3404 # Protein_GI_number: 15675842 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pyogenes M1 GAS # 195 373 1 179 208 132 41.0 1e-30 MQYQIIKREDFIVHRWSGGTTSEIFLFPPSSCWEKKDFQIRISSADCRVDGAPYSDFTGF TRHILPLRGSMHMFHEGHHEVLLNPFDVDIFDGSWNTHHIGKAVDFNLLYSENWTGRLKP LLQNESIKIEKSGIIGFYAVEDAEIRSGDFSVEVPAGDFIVFNDINEATVFSIKAALHGP CVIAAAAFPKGSSHMRLSSMPVDEFCALTASDAPAPGGGSVSALCGSLAAALAEMVGNLT LGRRGCDDAQESIREALAELEEIRTILLKAIDEDSESFNGFMAALKMPKNTEEEKVLRKT AMSQALKTASLVPLKVAGQSVRIFKFSRLMLERGNKNAATDAMVSALAARTAAIGALLNV RINLRLIHDPEFVRTTLEEVLRLETLTNEQEKEITEIGYQLLNQ >gi|301349849|gb|ADCQ01000001.1| GENE 5 3415 - 4392 950 325 aa, chain - ## HITS:1 COG:STM4400 KEGG:ns NR:ns ## COG: STM4400 COG0697 # Protein_GI_number: 16767646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 301 1 303 321 166 35.0 5e-41 MLIGISFGLAACVLWGFTYLLPLLLPDYPTTYISVARGIVMGVTALAGLALQRQYLKQVN LKDWNTAFWLTLIGNLIQPWCLFSAVQYAGVALAATFFGLIPVLVALIANERDKRKGKKY LPLSKLILPLSVIFIGLILANFEGLINVLEDYKSNPNFLIGVIYSVLSTAMWTWYPIRNA DWLLDHPKISPVFFTSMQCSLLLPFGIVLYVALWLFSGDLKELFGPSPFAFIGWSLFAGV VCSFGATALWNAMSQKVPTAVAGPMLVFETIFSVTWGCVYARAFPTATLFIGMVLLVSGV VYTLMLFNSLNEPVVSEAESSAGGM >gi|301349849|gb|ADCQ01000001.1| GENE 6 4570 - 5538 314 322 aa, chain + ## HITS:1 COG:BMEI0116 KEGG:ns NR:ns ## COG: BMEI0116 COG0583 # Protein_GI_number: 17986400 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Brucella melitensis # 7 313 3 308 308 99 26.0 6e-21 MNREGNLDLTSLRIFIETAKDCNMTRAAAALGISQPAVSAAIKKIENSLGSPVFDRDRRP IQLTTAGRLLWNRSFLILEQLDDLTRSIQFSLENEKPDLRLGASDCMSACVCPSLIDYLL NETENISACTGSTPKVTDLLKHRAVDIGLSSDSIEDVPHFQALHFLTERFLFVLPRSLTK QRNISCNQDLVAAVESLPYLRFGKETFDFVQSERIYRSLHFIDQRRIEVDTNFTMMELVA RGKGWTILPPLSLWMVNRKLEDVDFLPLSIEATRRYFVVYQEQAFTVLANKILKKTRKIF EKEIFPEMKKVRPELLQFIELE >gi|301349849|gb|ADCQ01000001.1| GENE 7 5666 - 6982 1631 438 aa, chain - ## HITS:1 COG:VCA0205 KEGG:ns NR:ns ## COG: VCA0205 COG2704 # Protein_GI_number: 15600974 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Vibrio cholerae # 5 433 4 436 442 280 39.0 6e-75 MVTLIELAIVFLAIFMGVRHGGLALGFWGGLGLIVLAVVFGVFPTAPPIDVMLIILAVCT AASCMEAVGGLDILVRFAAKIIRAKPKMVGVVAPVVSFFLTFFAGTGNAVYALLPVVYEV SYNAGVRPEPAMAGTAVAGQVGITASPIAAAMAAMIGLFAQNGHGDIGLGQILMITFPAC LIGVILGSIICVFFGKDLKNDPAYQARLKAGLVLPPEKLSDRKLPPQAAWSVLIFFGAIV VIVLAGFFPNLRVLPGGTKAVGMALVIEAVMLAAGAFMMLFCKPDVKKIVKSPVMEACVV SITCVFGVAWMSDSFIAANKDVFMQVAGSLAQVAPWLFTFILAGMSALLASQGATTRAIM PLGFALGINPWYLIAMFPAVNCLFILPTTGPALAAVGMDRSGTTYIGKYILNHSFQLPGL VMVAISVVTAFGLVSFFA >gi|301349849|gb|ADCQ01000001.1| GENE 8 7361 - 8761 893 466 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 24 465 39 478 484 213 33.0 8e-55 MLSRRNLLASMLLSGIPAFASEVKDWDVIVVGTGVAGLAAACSALEAGAGNVLILEKSPV VGGHSILSTGYVAAVDKPRQQRAGIEDSPSLMLQNMLEVGGYLNDVELAKIVCENSEDTV YWLEKMGVKWDGNIYQTVAGLHPRSHITNFVRAGYDYVMALLSSAKRMGAKLALNTKALD LIEKDERVIGIRVQNPDGSITDLFAKAVILATGGFTANVELRSKFDPRLGSEFPTTANPN RKSFDGATGDGLIMAQKLGAATKDAEFLQLIPFWGGRLLDYVGADIYVNNQGFRFVNEAA SWRDVSNAILEQDKREMWAITDSQSKKGASLGVKLMNGTVKKASTIKEMAKAMGVPIQNL EETIRSYNKFSAEGMDPIFGKKVFTQQINQPPFYFGKEKLAVHFCCGGIKLNKNAEVVKL DGSIIPGLYVCGEASGGPHGHDRLGGVALTSAFVFGRIAGRNAVTM >gi|301349849|gb|ADCQ01000001.1| GENE 9 8761 - 9408 324 215 aa, chain - ## HITS:1 COG:STM1387 KEGG:ns NR:ns ## COG: STM1387 COG4566 # Protein_GI_number: 16764737 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Salmonella typhimurium LT2 # 16 207 4 190 206 132 38.0 4e-31 MFEFLDTPELQDKVIVRLVDDDKDFLRSMKLMLEMMGWKVRDFSLAQDFLQEENFKVPGC IVLDMRMPGMTGLELQRQLINDKEKALPIIFLTGHGDVESAVHTLKRGAFDFLQKPVNPL KFNKTIEEACRLSLDNFGASLEDREVIKAFKSLTPREKEIFELAAGGKSNKEIAAELDIA VATVKMHRANAFEKMSVHSSIEALHKLNAVKDKDR >gi|301349849|gb|ADCQ01000001.1| GENE 10 9418 - 11214 558 598 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 54 565 51 545 592 117 23.0 7e-26 MNLKKLLSTFLWVLILVISVPCLAYEGLTVKIGYAQGLELYHQSSILKETLEYLQKKIPN YRFELLPISSVDTQEDIKKEKIDFLIAPSNFFVELSGGIPFTHLATRIFDGTKDPAKTVG STFVVRAERNDIQSIKDLRGKNCAASLPDSLGGWLAALGEIKEHGFDPDNFFKTKNFTQF QVPDVLNSVLSGSSDVGILSTCILEEAEVLGMIEKGSLRVINKKTDDLSPIHCARSTQLY SDMSFVSLQGVPEPLVREVTVALLSMPVFDHSRWSVENDQYSIRKLLRELRLGPYSYLRD NSLTGLAKRYKTEIIAFVGILLFLIFNEFNLRRLVNKRTRQLSDALKAKEEADREAAEER KKFATLEKNGIIAQLGTIIAHEAKQPIATLTNYLQIFKMYLDRKNDNDAFSKDVFENMEN QVSRLNTLVNSVRNFAKQKQNPQVKTDLVLITQKAIRNLEATEPDIEKVKISFNSKLKTA LVLADPFSLELLILNLLRNGAQEAVSNTAKGSPILKVELSLSNDNKSFILLVENSGKLMT DKDLSRLVSLGESVKPDGLGLGLSIIRGIADLHGADLGFTGRDKGGVIASLRIDQLHV >gi|301349849|gb|ADCQ01000001.1| GENE 11 11285 - 13087 2411 600 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 91 594 1 476 484 174 32.0 5e-43 MLNKLVFLSALSVVALSGAAQAATFNPGTYTAVSKGNGGEVPVTVTFTKNAIESVKIGAN KETPGIGSIAIEKLPKAIVDSQSLAVNGVSGASITSHAILAAVAACVKQAGGNVDELSKA KAQKAVVKNETLNADIAVVGAGAAGQTATIRASQLGKKVILIEKMPFAGGAAAVNGGTVV IQGSKIQKEAGVKDDSPAIMTEDYIKNGHNLNDRRMLELYVNNVGPMVDWATTEGGMQLN TKAGFTNEAEHSKPRVMRWVDGAQGATRNFKASVEKSGAKVLLATPAKELIVDNGRVVGV KAEGENGIHYTIKAPVVILTTGGFGANKSMLAGSLKNSLYYGVKSSNGEGHQMAMKIGAK TQMMDLGKIYPNGMEVAPGIAKSTIWSNKAAFEDHSGIMVNKAGKRVISELDTNHNIKNE EVKQGGKLFILMDQPSYDAFLTKLSITGISKGDMDKWLAQNGKGYPIVVKADSIPAVAKK AGVDGAELLKTVARYNGFVKAGKDADFNRPAKFMKEVIADKGPYYIVEQQPRFATTMGGV VTDMNLNVLDENNKPIKGLFAAGELVGGAMGDDSPPGGNMAWAMTSGKLAAERAVQSLNK >gi|301349849|gb|ADCQ01000001.1| GENE 12 13120 - 14031 1211 303 aa, chain - ## HITS:1 COG:STM1358 KEGG:ns NR:ns ## COG: STM1358 COG0710 # Protein_GI_number: 16764709 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Salmonella typhimurium LT2 # 46 298 1 252 252 159 35.0 7e-39 MIQSGIGGLAAAFSASAFASTKLKGNEKMMPVDTLNHEPGWDKEPVEVLEIKGVRIGEGR PKIIASTTAKTPEAFIALVQDYNSRPELQMIELRPDYIGEISGKEFAKLTKQVYEIVKNK PILMTFRDKTEGGGRHVSDEYYRDFYFDVLDNGKIDLIDIEMFRNADICKQIVKKAKEKG VKVVMSDHEFGWTPSEAEIIRRLLLQEQLGSDILKIAVMAHNTGDALNLMNATWKTRNYF SRKPMLTMAMGKDGVLSRMTGEFTGSDITFCMVGGKPSAPGQIPSEEAEQILNSIHKAMY PVK >gi|301349849|gb|ADCQ01000001.1| GENE 13 14220 - 14990 334 256 aa, chain - ## HITS:1 COG:no KEGG:blr4068 NR:ns ## KEGG: blr4068 # Name: not_defined # Def: hypothetical protein # Organism: B.japonicum # Pathway: not_defined # 19 253 40 269 272 172 42.0 1e-41 MFYKNVMKPLMTDKPVGIKNVLLVGNSFMFYNCGVNGMINGFAKAKHRDLVITLVGIGGA SLYWHDVKSYLRPNALRSYKIASDGTNKVTFLDYPDGKIFDAVVLEDSSQGPIHPELKEL FRESARKHCQDIREAGARPFFMMTWAYKDKPEMTSLLADATIEVANENSASVIPCGMAFE RSSKDFPEIELIRSDNRHPTVAGTYLEAAVFFASLTGITPTDCDFYGRFDDLIVALETGK KLQRIAWNTVRDFNSW >gi|301349849|gb|ADCQ01000001.1| GENE 14 15027 - 16400 1236 457 aa, chain - ## HITS:1 COG:FN0667 KEGG:ns NR:ns ## COG: FN0667 COG0534 # Protein_GI_number: 19704002 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Fusobacterium nucleatum # 9 410 11 411 426 213 33.0 8e-55 MAIFSKNIDMLNGTIWDKMVVFAIPLALTGVLQQLYNLADVAVLGHFVSNEAVAAVGTNV PIVGLIVAFCIGLSIGANVVVARYLGMRKYDDASRAVHTAFATAVIFGVIAMIIGELCSS ILMVWMQVPPNVVRHSEIYLQMYLLGMPFISIYNFLSAVLRSQGDTQTPLWALCIASVFN ALGDLFVVTVVDWGIGGVALMTALANLLASGILVYKLMRTDGPLRLYPNRLFKMDKKALR SMIKIGWPAGLQSSVFSLSNLIIQSAINSLGADVMAASVAAFTIEINCYCVINGFGLAAT TFISQNYGAGNLERCKRITRVNMALNIGITVVLSVLIYGFGRYLLGFFTQSEEIISLGMI RLLWVVIPEPLNSVMEVLSDSMRGYGYSLPPAIITVVVICTIRIVWVYSVFAAKPTYEIL MMVYPLSWLVTSICLTFLYFRFMKQLPAKRCRTAVKK >gi|301349849|gb|ADCQ01000001.1| GENE 15 16536 - 18899 1530 787 aa, chain - ## HITS:1 COG:Cj0264c KEGG:ns NR:ns ## COG: Cj0264c COG0243 # Protein_GI_number: 15791635 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 13 775 39 828 838 626 43.0 1e-179 MTESISEKLSSDVREGTSVTHWGIVKTTAVDGKISKIEPIPEDRRPSPNLKALAELPYAP SRIRYPMVREGYFKEGISSRDRRGEDKWLRVSWKEALDLIASELKRIYSEYGPSAVFGQS YGWKSPGTVNSASTLQRRLLSLCGGYVSGVNSYSTAAIGTILPYVVGTGDPQSTDWNVVL KNSRRVVFWGTDPIVTNDIDWSTTLHNYFPYLEKLKTSDIKTIDINPVRTETGEFLGSEW IAPKPGTDCALMLGMMYELECSGKTDKNILQNCTSGFEVFQDHLLGKSDGIPKSPEWASE ITGIPTDKIHSLTHELADNRTMIIMGWGIQRIQYGEQPHWMAFTLASMLGQIGLPGGGVG TNYHYSSGGCPFHIGPMIGGLASRVEPVLPRLKPWKGSAYIPVMRFADCFLNPGKTIEHN GKRLTYPDIRMVMWTGGNPFAHQPETNRLLSAWKKPETIVVTDCFMTATARHADIVLPAQ TVFEHNDICPIGTYTNDGIAANHAMIAPIGESRSDYRIYSELARRMGVEQEFTLGLDEIG WIQAIYQEAKNRGLSSGIQLPTFEEFWSKGIVFYPEDETSKEFVAFEEFRKDPANHPLRT ESGKIQIFSPRIASYGYDDCRGYPSYFEPSESLNNKKKYPLAYMSGKSAHRLHSQLDGTT HTASHNIGDREPIWIHPDNAAERGIQTGDVVLVRNDRGNVLAGAVVTDKVRKDVVLIRHG GWFEPQKQEDGSTLDVHGNANTLTMDVPTSKLACGNVASSGLVEVEKFEGDLPTVKIREE TVPQPKA >gi|301349849|gb|ADCQ01000001.1| GENE 16 19096 - 19515 428 139 aa, chain + ## HITS:1 COG:no KEGG:VPA0976 NR:ns ## KEGG: VPA0976 # Name: not_defined # Def: hypothetical protein # Organism: V.parahaemolyticus # Pathway: not_defined # 24 128 9 113 131 109 52.0 3e-23 MLEYELKKLNLSEKREQQLKLPYIAKDVETIRIMTEIYCHAHHNTKEGLCPECEEFYLYS VKRLACCPFGEKKPVCAKCNIHCYGKGYKERAKEIMAFSGPKLLLKHPILSMRHILALFR EPPEKPTAAKPHPLAKEKN >gi|301349849|gb|ADCQ01000001.1| GENE 17 19564 - 21054 1936 496 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 14 495 24 481 484 203 34.0 6e-52 MLQVMVSGALCSALPSIAFAQTQKLAPEYDVIVIGSGFAGLAAAISAAENGAKVAVLEKM QVAGGNSSRSGGMMAIPGSSVQKEQGIEDSPAKLAADMKRIGLGLGDPEHIKVVTEHAAP TFEWTKKQGVVWRTDLTGKGGHSARRCLITEEGTGQGILIPFMKKLKELGVPVLTGMKVI RLDKNKDGRVIGVTALEDYKFGKEDSGKPVEIKAKDGVILAFGGFSADVGYRTRLDPKLT GNLKTTNQPGATAELMREASRIGANIIQADWIQFLPNTSPDEEGMGMGSHFASVGGSLYG LWINTKTGKRFTDEFGDRKTTTDAIFKVLDAGGKTISVTDSVGVASFNKVRPGAMDILRK NGAVKEYATLDDLAKAYGISPDALKQTFAEFNKAIESGKDTEFGRKLDKDIKPLTHAPYY VSEMSPKIHHTMGGIATDTSTRVLSVVDDKPIPGLYAAGECTGGIHGAVRIGANAVMDCL VNGKLAGETVMKDAKK >gi|301349849|gb|ADCQ01000001.1| GENE 18 21354 - 21773 150 139 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302861100|gb|EFL84174.1| ## NR: gi|302861100|gb|EFL84174.1| hypothetical protein HMPREF0189_02317 [Burkholderiales bacterium 1_1_47] # 1 139 44 182 182 296 100.0 3e-79 MEMKYISGIHALNLRCSLETCGDWHASGIQWKNLTVRESSDSVFGDYGIEDNSSVPGHPG NHKAANHIRALLDLVADGAFGYAQGMKNELICNESYTPEVFSKLLLLKNSPRWLKIKEFI GKEYGVPWLHFLREHGYDR >gi|301349849|gb|ADCQ01000001.1| GENE 19 21763 - 22443 254 226 aa, chain + ## HITS:1 COG:no KEGG:Veis_1419 NR:ns ## KEGG: Veis_1419 # Name: not_defined # Def: hypothetical protein # Organism: V.eiseniae # Pathway: not_defined # 30 208 13 196 447 75 35.0 2e-12 MTDEEKDWQTNHGNFIEAFLLFLNKQTDQFVLKGGTALSLCYGLDRFSEDIDLDGRKQDI KEIVKRFCVNHGVNFRVAKDTATVKRCIIDYGNDVHPLKIEVSYRNKNLGLEEASKDWTQ IHGIKVYGIDALARMKAMAYQGRDKIRDLYDLSFIVNNFSDGLSHQTKGMIRDTLSYKGI EQFDYLVATQQDTLIDKDRLAEGFLKMHEKLGLLLDEEEQQTNASH >gi|301349849|gb|ADCQ01000001.1| GENE 20 22716 - 24053 1795 445 aa, chain + ## HITS:1 COG:NMA0303 KEGG:ns NR:ns ## COG: NMA0303 COG0137 # Protein_GI_number: 15793316 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Neisseria meningitidis Z2491 # 3 438 6 443 447 724 79.0 0 METILKSLPIGEKVGIAFSGGLDTSTALLWMKKKGAFPCAYTANLGQPDEDDYEAIPRKA MDFGASIARLVDCREQLVAEGIAAIQSNAFHITTGGVTYFNTTPLGRAVTGTMLVNAMRE DGVNIWGDGSTYKGNDIERFYRYGLVANPDLKIYKPWLDVEFISELGGRAEMSQFLADNG FGYKMSKEKAYSTDSNMLGATHEAKDLEHLDSSMKIVEPIMGVPFWKEEVDIKPEKVTVR FEEGIPVALNGKEYDDKVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL HIAFERLVTGIHNEDTIEQWRINGIKLGRLLYQGRWFDPQAIMLRETAQRWVARAITGEV DIELRRGNDYTILDTRSPNLTYEPERLTMEKGDSMFTASDRIGQLTMRNLDIVDTRNKLG IYSKAGLIGGSSSSMPLLKGTKDND >gi|301349849|gb|ADCQ01000001.1| GENE 21 24160 - 25047 635 295 aa, chain - ## HITS:1 COG:PAE2861 KEGG:ns NR:ns ## COG: PAE2861 COG3301 # Protein_GI_number: 18313642 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Pyrobaculum aerophilum # 18 253 11 246 290 97 33.0 4e-20 MIDLSTLTPQLQATHWGWTIALFLWFIGLSGMGFFINYWVRQKNFVYVLTFCGIAGLALV TSHLGRLSNLPFVIFYALRDFSFNFQSWMMIGIVLLSLLSVGSVFYSMICAGIIFKGSKW QKLAQSNGFNAVFSVLGVCSTIYSGFLLTQAVGVSLWNSSLIPVLWIMSGLTSSIAMLEL MSAMGLVDHKSVGWCSRTSVWVDTAKLFAIFSFVYVALGSASIGARAGAEALISGNQALM FWIGGITFGTALPLLINLITRSQKVITGGAIFAVFGALFLRASILFSGYYDSLSF >gi|301349849|gb|ADCQ01000001.1| GENE 22 25044 - 25622 490 192 aa, chain - ## HITS:1 COG:PAE2860 KEGG:ns NR:ns ## COG: PAE2860 COG0437 # Protein_GI_number: 18313641 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Pyrobaculum aerophilum # 7 190 3 186 188 186 51.0 3e-47 MVEKKKQLAHLFDATQCISCGACIVACSQTNFPEMHNRSIPGRDWLASNIRVFRSEERRP VNLLVQCQHCSDAPCVKTCPFGANYYDENGLVRNDPNKCVGCNYCVASCPYDARWSHPDN GLPMKCMSDGCLKLIQQGEQPACVQACPAQARFFGDVKDPQSEISKKIASCRTELLMPNK GTKPNFFVVVQK >gi|301349849|gb|ADCQ01000001.1| GENE 23 25626 - 28202 2011 858 aa, chain - ## HITS:1 COG:PAE2859 KEGG:ns NR:ns ## COG: PAE2859 COG0243 # Protein_GI_number: 18313640 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Pyrobaculum aerophilum # 9 856 3 816 816 640 41.0 0 MSVDFVNLSMTRRKLIKGAACSAAAASAPSLVNHAFAEQIVKLEKEGWSKHPVACTMCGA YCGILAMRKEGEPISEKTVRIFPNPGHPQQGYCGRSAGAMWIWNHPLRLRKPLKRIGEKG EGKFKEITWDEALNEIGAKVKDLVQKYGESSITTTSHNFQGMSKWLTFPLGSPNNIGHQS SCNAAGINARNWVFGTGFSGAGKLEPDYENLRYLLLIGRTMGASMGALHTLNVARAKGAR VVAIDPKMPDITYGDAEWVAIRPGTDDAFLSALINEMLRTNTADLDFIEKGTNGAYLIKE NGQPLTQAEVIQGGDKTKYVVASSDGRLSFRGILRNDKGIPTAFDEDSSFKADLNMSGSV KLADGSSCPVKTAFVIIKETLAPYTPEKSSEITGIPADMIRRIARDFTNLKGVIDDGWYT SKNGTDVQVYRLVSIANAFNGNIDIPGGMIVTAAAGLKIPSVSQGKGPNGETWRMAKEKR IDKIIYPEAEGTFKVAMEAVLTGKPYPIKAAFFVGTTMFQREANSEELAERLKKLELSVV QDVLPQEICDYADYVLPSTYFMERMEMSGVKWARDGSIYLSDPQLSPPEGCEARHDVWIL LEILRRAFPERAARVGYKECKTAEEFNAYFDAFTKRGYAQLLEECDKVKPGWSRRIHEDI RTKGWSTIKIKEYGVYPYKKPFGTPSGKVEIYSFKSFEKPAYVRGIPPFTAHIPAPAFTP PKRNSNEFILVSGKNCTSCSGLSMFALPSKYLGDRTVWMNPEDAERLGISHGETVEVEGI DTGYKGNAQITVTKKVISGSLFAFGFSGGNRIKHLADHPDYQFIKEGINSHWYAKGYAQP VFGTVANNSAVRINKLRG >gi|301349849|gb|ADCQ01000001.1| GENE 24 28788 - 30575 612 595 aa, chain + ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 7 579 2 564 571 161 24.0 3e-39 MYFNKRKRAPKILKLLVVVLSLGASICFSADKTDIRVGIIDSFNPEFATTTLEPTLRYLN QKLPNYHFVAVPLNSVNPEKELKNNPVDFLISSAGTFHELSISIGIVHIATRKTILSDDP SASEGAAFVTLAKRADLIELKDLQGKVAAASQPNSFDGWLVGQHELFKNGLNPEKFFKRS VFTHFQFPDALMLLIQGEADVAILSACVLEELSQEGLIESSDFKVISQKPRDVLKCARST DLYPGIVFAARENIPPKLMWEVTSSLISMPPTNDYEWTIASRFSKVDELFRDLQLGPYQY LKDWSPAGIFKRFKTEILLTCGLLLLLILNSLYLRRTVARRTLQVRRTLNRQIKIEKEYR DSRNRLAQMEKFGVINQMSGMLAHEVQQPLMAINNYLAGLRVYLKSKGFSDAVTEQAIGS LEHNSKRIGSIVTRVRGYAKQKKGEMKSCDLTAIALSALNVLKALKFEHVEVTSDLPSEA RVVGDPLELELLIINLLKNACSAVEKQPKPIVDLKIGSLDDSHWCLSVSDNGPTLDDKSF ARLKTLGDSVKPEGMGIGLSIVRGIADKHGAELEFIRLPKGGICSRVVIDKEECK >gi|301349849|gb|ADCQ01000001.1| GENE 25 30572 - 31186 599 204 aa, chain + ## HITS:1 COG:AGl218 KEGG:ns NR:ns ## COG: AGl218 COG4566 # Protein_GI_number: 15890219 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 200 13 210 218 147 39.0 9e-36 MTTPLVRIVDDDADARSSSSFFLSMMGLEIKEYDSAYRFLEEDDMNRPGCIILDVRMPDM TGMELQVKLNQKDCRLPIIFLSGHGELDMAVHALKRGASDFLQKSAKPERLLAAVKKAVT ASMEEYESGNEIETLRKIYDSLTPREKEVVLGVAKGELNKVIGYSLGISERTVKMHRANL CSKLNVTSAVEMATFLRKIGVLNA >gi|301349849|gb|ADCQ01000001.1| GENE 26 31179 - 32606 827 475 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 28 475 39 484 484 231 32.0 2e-60 MLRRSFAAGLSLFAAFPLSVFAQSDAEKKFDLIIIGIGVAGLSTAVSAAQSGVKNTLLID KAAFVGGHSALSGGSVNAVDPEVQMKQGIKDSPELWFRQIMEAGEFQSDPILVNTLVNNA HSTLHWLREIGIPFDDQVFEAWGGKFQRAHSAGQKRNGMTYVRIMNQKARSLGVKVRLRT EAVSLLENNGQVIGVRVKTREGKLEDLQAKDIVIATGGFTANVPMRLKYDERLDASLFTT ANPTGRGFDGSTGDGILLAEKTGAQTVDMEAIQLIPLRGGRLLNYVGGDIFVDSSGKRFV DESKGVKAIGEAYLNLPDRVFWVITDSQSQKSLDLDAKLLSGTVRMADSVAEMAKKMHVS PKVLQETLDRYNKFAELGEDKDFGKKIFTQKIDKPPFYFGREQFDIHYSCGGLKINKKCQ VIGKESKPIPNLYAVGEVTGGIHGRDRLGGDSLISCFVFGKIAGEEIAKKQKDLK >gi|301349849|gb|ADCQ01000001.1| GENE 27 32838 - 32984 89 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSHSLFNKGGMPFTLENFSVIFISVNIFIFHRNLTGIYSGTDYPFYSI >gi|301349849|gb|ADCQ01000001.1| GENE 28 33005 - 33370 183 121 aa, chain - ## HITS:1 COG:no KEGG:LA_0562 NR:ns ## KEGG: LA_0562 # Name: not_defined # Def: hypothetical protein # Organism: L.interrogans # Pathway: not_defined # 5 109 6 114 160 65 34.0 5e-10 MPRRWSKLQRRIYTIFDLNIRLQFHCAIYRIPGHVDSVCPRYFLMLNDEIIWDWPKDCSA KLNYKEMYLVYRSSASDISDLINVYLNADRQSFIILKDDWELWIFSELLTVELDEDNGTM F >gi|301349849|gb|ADCQ01000001.1| GENE 29 33624 - 34661 1096 345 aa, chain - ## HITS:1 COG:CAC3420 KEGG:ns NR:ns ## COG: CAC3420 COG2008 # Protein_GI_number: 15896661 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Clostridium acetobutylicum # 1 343 1 342 344 368 51.0 1e-102 MIRFECDYAEGAHPKVLEALVKTNFEQSPGYGADSHCAHAQELIREACEDPLANVYFVTG GTPANVTVIASLLRPYQGCVCCKSGHINVHEAGAVEATGHKVIGLEGKDGKLSAETLRNY LESYWADPTHEHMVQPGMVYISSPTELGTVYSKSELQALSEVCQEFVIPLYLDGARLGYG LQSPGNDVTLEDIDRLTDVFYIGGTKVGILMGEAIVFPRGNGLDANFQSMIKQNCSMLAK GRLLGVQFEALFTDGLYEEMGKHAVDQAMRIKEAFKDKGYRFLVDSPSNQQFLFLPRDAK DKLSKDYAFECEGDVGQEEFLVRFCTSWATPKESVDKLLESIKSL >gi|301349849|gb|ADCQ01000001.1| GENE 30 34744 - 36207 1786 487 aa, chain - ## HITS:1 COG:YPO3441 KEGG:ns NR:ns ## COG: YPO3441 COG0260 # Protein_GI_number: 16123589 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Yersinia pestis # 1 486 1 497 503 370 43.0 1e-102 MKFSMVSGDVLKLECGALVVGIPAGGLTPTAEALDKASEGVVSRWIEAGDIHPCVGKVAV FRDFPGCKAERVVFVGLGKCKARDFQRVLKLGIDNAYLGKEVVLTTLEWLPDEVPEWIAE QSGFIACTALDRPKNYKTFDINWKKPKNIDLYVPDENKDVEKAYAEGVSVGVGVQMAKQY GDMPANLCTPKFMAEECMKLAGSLGLDVTVFDEKAMEKLGMGCLLGVAKGSHQKPRMVVI EYHGGKKDDTPVALVGKGLTFDSGGISLKPAKGMDEMKYDMCGAAAMIASIATAAAMKLP VNIVAAVGFTENMPGSSATKPGDILKSYAGKTVEVLNTDAEGRLVLCDVLAYTIDKFKPK CVVDAATLTGACVVALGNDIAGLFSNDEELAVSLMMAGDTAMDPVWRMPLDISFTKALKS NFADLANISDSRGAGACTAAAFLEEFVGDTPWAHLDIAGVANKSGKEKGSTGRPVPLLIN FLKDQAE >gi|301349849|gb|ADCQ01000001.1| GENE 31 36371 - 37273 871 300 aa, chain - ## HITS:1 COG:RSc2225 KEGG:ns NR:ns ## COG: RSc2225 COG0697 # Protein_GI_number: 17546944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Ralstonia solanacearum # 2 285 19 302 324 145 34.0 1e-34 MQSLWMVVAALFYAFYAVFVKYSGFEGIGSWEILFFRSIFGVVLFYGVMRFSGITLSTTH PWQHLIRSMCGTLSIICGIYSVSHLNIGLAMTLNYTSPLFVGAYILTTSLLHHARVNWGL MAMVLFGFIGVVIMLGPTIGPHEYYAAVVGLAAGFFTANATTFVKKLGMLHEPETRIIFY LVLVGAICGLIGTFLTGGFHPWSVKGALYILGLCICATGGQFCLTRAFSRGNLVLSSSLQ YTVILFSTILGEILFLEPATFPVICGMLIIVFSGLMSSYFVRRENKFLKEKAKASQSKTA >gi|301349849|gb|ADCQ01000001.1| GENE 32 37437 - 38843 1193 468 aa, chain + ## HITS:1 COG:RSc1556 KEGG:ns NR:ns ## COG: RSc1556 COG0277 # Protein_GI_number: 17546275 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Ralstonia solanacearum # 11 465 12 470 470 393 45.0 1e-109 MKEELKSLFAEIVGLNNVIDDPALFGPYTDDFTDHYVSKPLAVVRPSTTEQVSKIVKLCA QYNVPIVTQGGNTSLTGAATTYRPDAEIVLSMTKMKNVIDADPLSDTLTVQAGMTLAEVH EAAESVNRFFPLSFAAEGNATIGGCCACNAGGVAVLRYGTTRDLVLGVEVVLPDGRIYNG LRRLRKDNTGYDFKDLFLGSEGTIGIITAVVLKLFPAAKEKETAFCCLNSIQDAGKLLNR FKMKAGSSLTAFELISDLPIERVKKYLSDIEVPPLSDSPWKVLVELSLEKKPQESMMEHI LEGAFEDGEITDAAIASSLQDSHTFWHVRESIPLADRTAGGSIHSDVSLPISLIPEFVEE TSAMLLSAYPWLGLSIYGHLGDGNLHFNFVSPEDPGATYRNEEGIREILYSQVNKFEGSI SAEHGIGMLKLDHNYQFKDPLEIEMMRKIKNAFDPKGIMNPGKLLKTE >gi|301349849|gb|ADCQ01000001.1| GENE 33 38891 - 40042 1282 383 aa, chain + ## HITS:1 COG:CAC1714 KEGG:ns NR:ns ## COG: CAC1714 COG0252 # Protein_GI_number: 15894991 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Clostridium acetobutylicum # 65 356 41 316 331 137 30.0 3e-32 MAVKETRKLAKEEPSDIASEVLDDGYIDVMDDKTVALFPLGDMIIPTGIDYKPGDPEEDA LAVTDALPEIEDLCFLEVPKFFSLKGSVITPAMMLELSRAVQRVLIRPEVSGVVVTQPAD NIEETAYFVSISLSDVFQNQNSKPIVFTTCMNPEDPMFDGTKNLLDSIRVACHDVKGDIP TVVVCMNGEIHAASRAQLTHTNKASALASPGWGPVGYVDRDNVYFRCGALELDTGLNFPM LKKLTAKVPVVKAMCGDDGALLEMVLEKEPDAIIVEGFGRGNLPAGMMPAIKKAVKKGIF VVISTRASSGRVLDSTVFPGSVAQCLESGCLLAGETTTAKARLLLMYVLSQKEAIQLKKE DPERFFAYVQECLDPVLTNRLFG >gi|301349849|gb|ADCQ01000001.1| GENE 34 40042 - 40467 161 141 aa, chain + ## HITS:1 COG:no KEGG:BLJ_1338 NR:ns ## KEGG: BLJ_1338 # Name: not_defined # Def: hypothetical protein # Organism: B.longum_longum_JDM301 # Pathway: not_defined # 11 120 34 143 149 150 60.0 2e-35 MSQKFASMDELFEALSHSAFRSKFRLSYADRTYAETRNDELLKKHAKEILHDRIGSANPK NDGKQTPYKGHPIFTAQHATGCCCRGCLYKWHGIDKGRELTEEELNTLSDVILEWIHRDL QKPTPKKRVRKGETLDLFDQD >gi|301349849|gb|ADCQ01000001.1| GENE 35 40623 - 41387 605 254 aa, chain + ## HITS:1 COG:SMa1993 KEGG:ns NR:ns ## COG: SMa1993 COG2755 # Protein_GI_number: 16263545 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Sinorhizobium meliloti # 29 252 14 229 229 102 31.0 7e-22 MPLNRRSFLGLSTILLSSPLPVFSSENKQAKRILVYGDSNSFGWAWSPEKDIYRLPIDQI WPQVMAQKLGPNYEVEVNALGGRTVKRDQKDGNGTGKSLSGKLFNGMVSLPAVLSENLPL DIVIVMLGTNDANSRYKNNAKAIADDLEEMIRMIQAGEWQSNTKFKTPKVLVIAPPLQPN ETAYGDAFSGAEKITKELPPLLQEKCRILGAEYINAQDFVKGIPGQIDRVHLSPEQHKVL GEAAAAKVKEIFAH >gi|301349849|gb|ADCQ01000001.1| GENE 36 41415 - 41834 292 139 aa, chain + ## HITS:1 COG:RSc0630 KEGG:ns NR:ns ## COG: RSc0630 COG4925 # Protein_GI_number: 17545349 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 29 120 8 99 118 102 52.0 2e-22 MKLLTAAAAITTCLLMSGNVMAQNIQIKVDGKAYAGGLNGNDAAKDFAAKLPLKLKFEDF GSTERISYLPKSLNLGSAPRSCDPQKGDITYYIPWGNLAVFVRDFRPSDNLVPLGKLSPG ALKAIQESGSKDVEISLVK >gi|301349849|gb|ADCQ01000001.1| GENE 37 41840 - 42784 633 314 aa, chain + ## HITS:1 COG:MA0367 KEGG:ns NR:ns ## COG: MA0367 COG2768 # Protein_GI_number: 20089264 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 33 314 63 353 355 82 27.0 9e-16 METTGFLRRTILLTAAAMPMIGSKVFAATPNQGASTVYFSKDINAENFLAIYDRLRKDAN LPEDRRLSGIKLHGDDVDTNRGMWEALLNHIPNSKFVECNYASIYPAGRGNTQGNIRAIT AQGVDKNRLDILDRNNEYTEVPIKGGKELKSVSAPTALLKEYGCVAVTANFRIPSFAGFS GACKNVGIGLASGEGKTQVHGLGVRKDAGFFRRLADASKGIHDAMDNRLLFINVVSNIHV DPLKGTKVRTGNLGIVGSLDLLAADQAAADLIYGLTPAEYNAYSLQEKIDRGFLQLEYLD EIKAGNRTYKLITL >gi|301349849|gb|ADCQ01000001.1| GENE 38 42803 - 43375 696 190 aa, chain + ## HITS:1 COG:MA0407 KEGG:ns NR:ns ## COG: MA0407 COG0716 # Protein_GI_number: 20089301 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Methanosarcina acetivorans str.C2A # 32 189 32 179 179 64 28.0 9e-11 MKKLLIATLLGLTAASAQVQAKTLLVYYSFTGNIEKAAVAVKDQTSTDVIQIQPAQKGLN YAANNYSLGSDLVDQIRSKPNDPSSYPAIDPVDVDFSKYDTVIIGTPLWWSNMAAPMQTF LFHNGKAMAGKKIGLIVSSASSGISGVERDARRLIPEGNFTKSLWIRSSQFSSAPKVVAE WLKANGLASK >gi|301349849|gb|ADCQ01000001.1| GENE 39 43442 - 44491 1441 349 aa, chain - ## HITS:1 COG:BS_yccC KEGG:ns NR:ns ## COG: BS_yccC COG0252 # Protein_GI_number: 16077338 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus subtilis # 21 349 49 375 375 342 58.0 6e-94 MFKKILLSATLMATATAFAADLPSVKILATGGTIAGTAASSTQTTGYKAGDLGIQTLIEA VPAMKDYANVSGEQVVKISSNNMDTKTLLKLAKRVNELLADPKVDAVVITHGTDTLEETA YFLNLVTKSDKPVILVGAMRPATAISADGPMNLLEAVRVASTPEAKGKGVMIVMNDEING ARDVTKTNTTNPATFKSPELGAMGYVSGNKVRFYKQSTKRHTTNSEFDVSKLETLPRVDI IYSHVDDDRIMADAAVAAGAKGIIHAGTGNGSIANPTMEGLKDAVAKGVVVVRSARVPNG ATTVSLPMWTKAGFLESDTLNPQKARLLLQLALTKTQDPKEIQRMFDQY >gi|301349849|gb|ADCQ01000001.1| GENE 40 44603 - 44740 198 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|212702587|ref|ZP_03310715.1| ## NR: gi|212702587|ref|ZP_03310715.1| hypothetical protein DESPIG_00613 [Desulfovibrio piger ATCC 29098] # 1 45 258 302 303 73 73.0 3e-12 MQDPAVIEAHKKAGMALDFKDNKELGDLIKAQDKFARDVVNDLYK >gi|301349849|gb|ADCQ01000001.1| GENE 41 45343 - 45502 154 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 53 1 53 190 107 100.0 2e-22 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGK Prediction of potential genes in microbial genomes Time: Fri May 13 05:18:57 2011 Seq name: gi|301349848|gb|ADCQ01000002.1| Burkholderiales bacterium 1_1_47 cont1.2, whole genome shotgun sequence Length of sequence - 6129 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 9/0.000 - CDS 1195 - 1902 481 ## COG0546 Predicted phosphatases 3 1 Op 3 . - CDS 1905 - 2588 680 ## COG0036 Pentose-5-phosphate-3-epimerase - Prom 2748 - 2807 1.8 4 2 Tu 1 . + CDS 2703 - 3893 774 ## COG2821 Membrane-bound lytic murein transglycosylase + Term 3915 - 3953 8.5 - Term 3902 - 3939 8.3 5 3 Op 1 1/0.000 - CDS 3950 - 4435 582 ## COG1651 Protein-disulfide isomerase 6 3 Op 2 . - CDS 4504 - 5316 822 ## COG1651 Protein-disulfide isomerase - Prom 5504 - 5563 79.9 + TRNA 5485 - 5560 92.0 # Phe GAA 0 0 + TRNA 5646 - 5721 93.0 # Phe GAA 0 0 - Term 5633 - 5701 30.4 7 4 Tu 1 . - CDS 5880 - 6128 348 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349848|gb|ADCQ01000002.1| GENE 1 513 - 1202 319 229 aa, chain - ## HITS:1 COG:SMc03195 KEGG:ns NR:ns ## COG: SMc03195 COG0692 # Protein_GI_number: 15966679 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Sinorhizobium meliloti # 6 225 7 223 241 195 48.0 5e-50 MLESSIKEDWKPVLSDFEHSEAGKKIEQLLAKQKAEGLKIFPPKPYRALELLSAGEVKVV ILGQDPYHGFNQANGLAFSVNKDVPPPPSLRNIFKEIKREYPEAEFRTGELEGWAKQGVL LLNTVLTVVEGTANSHSKKGWEELTDEIIAKVASEGRPVVFMLWGKSAQEKKKLIRKFNK DCLILESNHPSPLSAMRGPIPFIGNDHFRKANEWLTQKGISPINWTKHN >gi|301349848|gb|ADCQ01000002.1| GENE 2 1195 - 1902 481 235 aa, chain - ## HITS:1 COG:PA0608 KEGG:ns NR:ns ## COG: PA0608 COG0546 # Protein_GI_number: 15595805 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Pseudomonas aeruginosa # 8 233 14 232 272 130 35.0 2e-30 MKRFENLKAVLFDLDGTLVNTLPGLTELVNQMRSDFDKPPLSEEKVGKYIGKGMFVLVRR AMTDSMDEPFPEEMFNLAVKSMARHVEAGRYSKGVLYPDTIETIKYVKNLGLKTAIVTNK PYQMTLDTLAGKGLLELVDLVVGGDSAARPKPYPDPLVYACEKLGVAPEEVLMVGDSGND SSAAKQAGAQSILVRTGWSEGVPLDEIAKRDEAAAMIDHLSDLQALLPAKEGAHA >gi|301349848|gb|ADCQ01000002.1| GENE 3 1905 - 2588 680 227 aa, chain - ## HITS:1 COG:NMB1244 KEGG:ns NR:ns ## COG: NMB1244 COG0036 # Protein_GI_number: 15677116 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Neisseria meningitidis MC58 # 4 224 2 222 242 320 71.0 9e-88 MTKTKYRIAPSILSADFANLGKEVQDVIAAGADWIHFDVMDNHYVPNLTVGPMVCKAIRP YTEAPIDVHLMVEAVDEIVPLFAKAGANIITFHPEASRHVDRTLRLIRDCGCKAGLALNP ATSLEYLHYELDNIDMVLLMSVNPGFGGQSFIPTTIGKLQECRSLLDSYAEVSGRKVLLE VDGGVKKSNIREIAAAGADTFVAGSAIFNEADYKAVIDDMRSELASL >gi|301349848|gb|ADCQ01000002.1| GENE 4 2703 - 3893 774 396 aa, chain + ## HITS:1 COG:PA1222 KEGG:ns NR:ns ## COG: PA1222 COG2821 # Protein_GI_number: 15596419 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase # Organism: Pseudomonas aeruginosa # 9 390 12 379 385 278 40.0 1e-74 MTKRSIASLVSALICLALLNGCSSNKQKPQEITEPTEESVRFEISAFSDTPSSEQEDWAA ALSAFKISCRSIYRKTAWAEACSKASGTDAQNAEAFFKNNFTPWKIEKRTIGTQTGTVYS VSDTGLMTGYYEPLLTVSKHRTERHTTPILSTPDDLIIVDLAEAYPKLKGMRLRGKIQGR KLVPYDTRAKIVARKDLDKYSIAWSDDPVAVFFLQIQGSGRLRTEEGELIRVGYDDQNGR PYKAVGSWLVDQGYLKHHELSMQNIRAWAQNNPDKVDTLLNQNQSFVFFKEKKGGDPNEG PIGAQGLPLTPKASVAVDRRYISLGTPVLVSVSQTNPNLNFTKPVVAQDTGGAIKGPIRF DFFWGFGDEAGKNAGRQKSQARAWLLLPNGITPESL >gi|301349848|gb|ADCQ01000002.1| GENE 5 3950 - 4435 582 161 aa, chain - ## HITS:1 COG:RSc2892 KEGG:ns NR:ns ## COG: RSc2892 COG1651 # Protein_GI_number: 17547611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Ralstonia solanacearum # 28 144 128 241 248 77 33.0 9e-15 MTKKFPLTNWSEKKAFTIKLGAVKKYHIAVFADPNCPWCKRFFEENTDKLNDLEIFVYLA PVLGEDSEKLAAEILSEKDPAAAWTDWVMNENRPKVKVTEEAKNTVEDNMELLEKLGIET VPAIYLADGEGPYGFMTAMELISKIEQEGGKEDEGKEPKEL >gi|301349848|gb|ADCQ01000002.1| GENE 6 4504 - 5316 822 270 aa, chain - ## HITS:1 COG:RSc2892 KEGG:ns NR:ns ## COG: RSc2892 COG1651 # Protein_GI_number: 17547611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Ralstonia solanacearum # 56 269 35 248 248 172 40.0 5e-43 MNYKKHLCAALLALVPFTAFSQTTVNTPTAPAAAAADKSVPNAPAAIVQDEKQICDTLKK TLQGKLGIPVESVSVTPVKGVYEVVAQNEIMYSDATADHIIVGQLFETKTQRNLTAETKD RLSRIDFTKLPLADAIKIVNGTGARQIAVFSDPNCSFCRKLEASLKEMKDVTIYTFLYPV IRPSSLAESQNIWCAKDKGAAWRARMLDGVQAPAKSANCDVSAIERNIALGSKLGVTGTP TVFVPSGQRAPGAVSIEYLENMLAKDKLSE >gi|301349848|gb|ADCQ01000002.1| GENE 7 5880 - 6128 348 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 82 514 595 595 155 92.0 7e-37 RENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGP ETPEEVPEEPEIEPLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 05:20:26 2011 Seq name: gi|301349847|gb|ADCQ01000003.1| Burkholderiales bacterium 1_1_47 cont1.3, whole genome shotgun sequence Length of sequence - 156378 bp Number of predicted genes - 147, with homology - 145 Number of transcription units - 71, operones - 41 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 190 212 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 - Prom 210 - 269 9.3 + Prom 225 - 284 5.9 2 2 Op 1 . + CDS 410 - 988 794 ## COG2119 Predicted membrane protein + Prom 995 - 1054 2.7 3 2 Op 2 . + CDS 1079 - 1849 794 ## gi|302860889|gb|EFL83964.1| conserved hypothetical protein + Term 2063 - 2093 2.0 - Term 1672 - 1711 -0.3 4 3 Op 1 . - CDS 1806 - 2357 427 ## Aave_2832 hypothetical protein 5 3 Op 2 . - CDS 2424 - 2531 100 ## - Prom 2648 - 2707 4.1 + Prom 2365 - 2424 5.3 6 4 Op 1 9/0.031 + CDS 2502 - 3797 1153 ## COG0373 Glutamyl-tRNA reductase + Term 3822 - 3851 1.4 + Prom 3813 - 3872 2.6 7 4 Op 2 32/0.000 + CDS 3894 - 4976 1181 ## COG0216 Protein chain release factor A 8 4 Op 3 . + CDS 4979 - 5782 181 ## PROTEIN SUPPORTED gi|225138791|ref|YP_002706825.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific + Term 5894 - 5920 -0.6 - TRNA 5860 - 5934 82.6 # Thr TGT 0 0 - Term 5933 - 5986 3.4 9 5 Op 1 13/0.000 - CDS 6022 - 6408 241 ## COG2969 Stringent starvation protein B 10 5 Op 2 . - CDS 6419 - 7033 410 ## PROTEIN SUPPORTED gi|68250027|ref|YP_249139.1| stringent starvation protein A - Prom 7070 - 7129 3.4 + Prom 7010 - 7069 3.6 11 6 Tu 1 . + CDS 7225 - 7686 589 ## COG1970 Large-conductance mechanosensitive channel + Term 7698 - 7738 6.4 12 7 Op 1 . - CDS 7728 - 11267 2161 ## gi|302860897|gb|EFL83972.1| hypothetical protein HMPREF0189_01335 13 7 Op 2 . - CDS 11304 - 12056 400 ## COG0327 Uncharacterized conserved protein - Term 12064 - 12098 6.7 14 8 Op 1 . - CDS 12117 - 12521 728 ## HCH_05069 hypothetical protein - Prom 12547 - 12606 3.7 - Term 12576 - 12606 1.9 15 8 Op 2 . - CDS 12617 - 13051 568 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 16 8 Op 3 . - CDS 13120 - 13905 561 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 - Prom 13972 - 14031 4.0 + Prom 13950 - 14009 4.2 17 9 Op 1 . + CDS 14060 - 14959 1079 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 14998 - 15028 2.1 18 9 Op 2 . + CDS 15032 - 16270 976 ## Rmet_2641 major facilitator transporter + Prom 16283 - 16342 4.9 19 10 Tu 1 . + CDS 16458 - 17144 497 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 17152 - 17187 4.1 - Term 17140 - 17173 4.5 20 11 Tu 1 . - CDS 17194 - 17673 645 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Prom 17703 - 17762 5.5 + Prom 17671 - 17730 8.0 21 12 Op 1 . + CDS 17771 - 19255 1415 ## COG4783 Putative Zn-dependent protease, contains TPR repeats + Prom 19307 - 19366 1.8 22 12 Op 2 . + CDS 19414 - 20457 1323 ## COG0492 Thioredoxin reductase + Term 20486 - 20536 5.3 - Term 20477 - 20519 3.2 23 13 Tu 1 . - CDS 20539 - 21612 1383 ## COG0489 ATPases involved in chromosome partitioning - Prom 21734 - 21793 5.1 + Prom 21671 - 21730 7.2 24 14 Tu 1 . + CDS 21756 - 23858 2265 ## COG0143 Methionyl-tRNA synthetase + Term 23871 - 23915 11.2 + Prom 23880 - 23939 3.6 25 15 Tu 1 . + CDS 24081 - 25835 1790 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 25850 - 25885 5.9 + Prom 25882 - 25941 2.2 26 16 Tu 1 . + CDS 25976 - 26824 666 ## gi|302860911|gb|EFL83986.1| hypothetical protein HMPREF0189_01349 + Term 26857 - 26891 4.2 + Prom 26954 - 27013 5.1 27 17 Op 1 . + CDS 27057 - 28574 2099 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 28 17 Op 2 . + CDS 28628 - 28984 388 ## Sputcn32_3388 hypothetical protein 29 17 Op 3 . + CDS 29017 - 30162 1247 ## COG3203 Outer membrane protein (porin) + Term 30205 - 30259 10.4 30 18 Tu 1 . - CDS 30259 - 31884 1345 ## COG0281 Malic enzyme - Term 31957 - 32005 1.4 31 19 Tu 1 . - CDS 32019 - 33239 1151 ## COG0038 Chloride channel protein EriC - Prom 33410 - 33469 3.4 + Prom 33001 - 33060 1.6 32 20 Tu 1 . + CDS 33258 - 33410 64 ## + Term 33484 - 33524 -0.1 - Term 33455 - 33481 -1.0 33 21 Op 1 13/0.000 - CDS 33505 - 34197 646 ## COG1729 Uncharacterized protein conserved in bacteria 34 21 Op 2 20/0.000 - CDS 34204 - 34695 665 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 35 21 Op 3 . - CDS 34709 - 36004 1139 ## COG0823 Periplasmic component of the Tol biopolymer transport system - Prom 36035 - 36094 3.2 - Term 36103 - 36149 7.1 36 22 Tu 1 . - CDS 36166 - 37734 1963 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 37 23 Op 1 . - CDS 37842 - 38822 649 ## PROTEIN SUPPORTED gi|148828154|ref|YP_001292907.1| ribosomal protein L11 methyltransferase 38 23 Op 2 6/0.062 - CDS 38819 - 39529 507 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 39 23 Op 3 . - CDS 39541 - 40548 951 ## COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases - Prom 40624 - 40683 3.2 + Prom 40557 - 40616 4.0 40 24 Op 1 16/0.000 + CDS 40670 - 42997 1839 ## COG1452 Organic solvent tolerance protein OstA 41 24 Op 2 2/0.219 + CDS 43001 - 44362 1649 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 44380 - 44412 4.0 42 25 Tu 1 . + CDS 44419 - 45243 825 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 43 26 Op 1 3/0.125 - CDS 45240 - 46511 509 ## COG1451 Predicted metal-dependent hydrolase 44 26 Op 2 . - CDS 46520 - 47248 688 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Term 47262 - 47292 5.0 45 27 Op 1 19/0.000 - CDS 47307 - 49397 2578 ## COG0751 Glycyl-tRNA synthetase, beta subunit 46 27 Op 2 1/0.344 - CDS 49411 - 50313 1122 ## COG0752 Glycyl-tRNA synthetase, alpha subunit 47 27 Op 3 9/0.031 - CDS 50362 - 51885 1230 ## COG0815 Apolipoprotein N-acyltransferase 48 27 Op 4 11/0.000 - CDS 51901 - 52773 776 ## COG4535 Putative Mg2+ and Co2+ transporter CorC 49 27 Op 5 17/0.000 - CDS 52806 - 53276 350 ## COG0319 Predicted metal-dependent hydrolase 50 27 Op 6 10/0.000 - CDS 53269 - 54264 867 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 51 27 Op 7 . - CDS 54265 - 55590 608 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 - Term 55643 - 55672 0.4 52 27 Op 8 . - CDS 55686 - 56510 610 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 56667 - 56726 3.3 - TRNA 56567 - 56643 87.2 # Met CAT 0 0 - Term 56665 - 56702 -0.1 53 28 Op 1 . - CDS 56740 - 57558 979 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 54 28 Op 2 2/0.219 - CDS 57539 - 58864 989 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase 55 28 Op 3 1/0.344 - CDS 58861 - 59808 539 ## COG0859 ADP-heptose:LPS heptosyltransferase 56 28 Op 4 . - CDS 59819 - 61204 1757 ## COG1109 Phosphomannomutase - Prom 61228 - 61287 3.3 + Prom 61235 - 61294 2.9 57 29 Op 1 4/0.125 + CDS 61318 - 62262 1015 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase 58 29 Op 2 4/0.125 + CDS 62278 - 63273 1324 ## COG0451 Nucleoside-diphosphate-sugar epimerases 59 29 Op 3 . + CDS 63270 - 63851 360 ## COG0241 Histidinol phosphatase and related phosphatases 60 29 Op 4 . + CDS 63848 - 64342 477 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase + Term 64583 - 64637 2.5 - Term 64174 - 64216 8.0 61 30 Op 1 . - CDS 64335 - 65183 953 ## COG1210 UDP-glucose pyrophosphorylase 62 30 Op 2 . - CDS 65242 - 66078 790 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 63 30 Op 3 . - CDS 66065 - 66517 390 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) - Prom 66537 - 66596 2.9 + Prom 66533 - 66592 4.3 64 31 Op 1 . + CDS 66683 - 67123 440 ## Rmar_1659 hypothetical protein 65 31 Op 2 . + CDS 67134 - 67571 381 ## Rmar_1659 hypothetical protein 66 31 Op 3 . + CDS 67639 - 68229 925 ## COG3247 Uncharacterized conserved protein + Term 68248 - 68301 3.2 - Term 68234 - 68287 3.2 67 32 Tu 1 . - CDS 68342 - 69481 1315 ## gi|302860951|gb|EFL84026.1| hypothetical protein HMPREF0189_01389 - Term 69568 - 69603 4.0 68 33 Tu 1 . - CDS 69624 - 73565 4252 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain - Prom 73644 - 73703 2.1 - Term 73712 - 73757 7.1 69 34 Op 1 . - CDS 73783 - 75072 1191 ## COG2379 Putative glycerate kinase 70 34 Op 2 . - CDS 75095 - 77947 1592 ## COG0178 Excinuclease ATPase subunit 71 35 Tu 1 1/0.344 + CDS 78221 - 78706 390 ## COG0629 Single-stranded DNA-binding protein + Term 78719 - 78746 -0.9 + Prom 78728 - 78787 4.3 72 36 Tu 1 . + CDS 78810 - 79337 590 ## COG0629 Single-stranded DNA-binding protein + Term 79351 - 79388 5.1 - Term 79129 - 79153 -1.0 73 37 Op 1 36/0.000 - CDS 79395 - 80600 415 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 74 37 Op 2 24/0.000 - CDS 80594 - 81301 279 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 75 37 Op 3 13/0.000 - CDS 81301 - 82602 1224 ## COG0845 Membrane-fusion protein 76 37 Op 4 . - CDS 82592 - 83995 1245 ## COG1538 Outer membrane protein - Prom 84040 - 84099 3.4 77 38 Tu 1 . - CDS 84133 - 85029 850 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 85106 - 85165 2.2 + Prom 84876 - 84935 3.5 78 39 Tu 1 . + CDS 85116 - 87167 2415 ## COG0480 Translation elongation factors (GTPases) + Term 87195 - 87225 4.1 + Prom 87235 - 87294 5.0 79 40 Op 1 . + CDS 87380 - 87625 290 ## COG2331 Uncharacterized protein conserved in bacteria + Term 87665 - 87712 1.1 + Prom 87641 - 87700 4.5 80 40 Op 2 . + CDS 87724 - 89541 2514 ## COG0173 Aspartyl-tRNA synthetase + Term 89562 - 89594 7.0 81 41 Op 1 . - CDS 89614 - 90807 1113 ## COG2814 Arabinose efflux permease 82 41 Op 2 . - CDS 90822 - 91451 696 ## Bphy_6448 putative lipoprotein 83 42 Op 1 . - CDS 91559 - 92251 735 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 84 42 Op 2 . - CDS 92244 - 93323 754 ## COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family - Prom 93351 - 93410 2.8 85 43 Op 1 2/0.219 + CDS 93481 - 96162 2045 ## COG1042 Acyl-CoA synthetase (NDP forming) 86 43 Op 2 . + CDS 96226 - 96981 748 ## COG1024 Enoyl-CoA hydratase/carnithine racemase + Term 97025 - 97057 2.2 - Term 96902 - 96948 9.2 87 44 Tu 1 . - CDS 96986 - 97411 539 ## COG1607 Acyl-CoA hydrolase + Prom 97528 - 97587 3.9 88 45 Tu 1 . + CDS 97607 - 98395 549 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 98426 - 98461 -0.9 + Prom 98484 - 98543 2.0 89 46 Op 1 13/0.000 + CDS 98576 - 99559 1027 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 90 46 Op 2 11/0.000 + CDS 99559 - 100089 634 ## COG1778 Low specificity phosphatase (HAD superfamily) 91 46 Op 3 12/0.000 + CDS 100093 - 100686 665 ## COG3117 Uncharacterized protein conserved in bacteria + Prom 100729 - 100788 3.0 92 46 Op 4 19/0.000 + CDS 100821 - 101414 573 ## COG1934 Uncharacterized protein conserved in bacteria 93 46 Op 5 17/0.000 + CDS 101411 - 102184 185 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 94 46 Op 6 1/0.344 + CDS 102195 - 103553 1028 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 95 46 Op 7 3/0.125 + CDS 103602 - 104078 344 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 96 46 Op 8 3/0.125 + CDS 104098 - 105036 823 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 97 46 Op 9 . + CDS 105050 - 105919 691 ## COG1660 Predicted P-loop-containing kinase + Term 106077 - 106107 1.9 98 47 Tu 1 . - CDS 105916 - 106902 612 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase - Prom 106950 - 107009 2.3 - Term 106959 - 107018 19.0 99 48 Tu 1 . - CDS 107041 - 108330 760 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 108354 - 108413 6.7 + Prom 108397 - 108456 4.5 100 49 Tu 1 . + CDS 108485 - 110113 1758 ## COG4108 Peptide chain release factor RF-3 + Term 110116 - 110157 10.5 - Term 110105 - 110145 10.3 101 50 Op 1 . - CDS 110149 - 111363 1014 ## COG1160 Predicted GTPases - Prom 111387 - 111446 2.6 - Term 111398 - 111429 1.6 102 50 Op 2 . - CDS 111451 - 112143 853 ## Shewana3_0709 formate dehydrogenase gamma subunit (EC:1.2.1.2) 103 50 Op 3 . - CDS 112136 - 112483 573 ## gi|302860987|gb|EFL84062.1| putative periplasmic 104 50 Op 4 . - CDS 112501 - 113853 1563 ## COG4624 Iron only hydrogenase large subunit, C-terminal domain - Prom 113873 - 113932 3.0 105 51 Op 1 . - CDS 114091 - 115437 1427 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 106 51 Op 2 . - CDS 115492 - 117342 1320 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) - Prom 117393 - 117452 5.0 - Term 117415 - 117451 1.4 107 52 Op 1 . - CDS 117472 - 118059 752 ## gi|302860991|gb|EFL84066.1| proline-rich region - Prom 118081 - 118140 2.0 - Term 118100 - 118139 1.1 108 52 Op 2 . - CDS 118143 - 119972 1543 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 109 52 Op 3 . - CDS 119969 - 121117 830 ## Msip34_2311 putative lipoprotein-like protein - Prom 121257 - 121316 3.2 110 53 Op 1 . + CDS 121143 - 122063 542 ## COG0313 Predicted methyltransferases 111 53 Op 2 . + CDS 122090 - 123298 1360 ## COG2326 Uncharacterized conserved protein + Term 123330 - 123369 5.2 - Term 123318 - 123356 7.2 112 54 Op 1 . - CDS 123377 - 123856 526 ## COG1881 Phospholipid-binding protein 113 54 Op 2 . - CDS 123871 - 124326 514 ## COG0517 FOG: CBS domain - Prom 124367 - 124426 4.2 114 55 Op 1 . - CDS 124472 - 125377 616 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 115 55 Op 2 . - CDS 125377 - 125781 351 ## COG1539 Dihydroneopterin aldolase + Prom 125612 - 125671 1.9 116 56 Tu 1 . + CDS 125825 - 126016 165 ## Reut_A0223 hypothetical protein + Term 126125 - 126151 -1.0 117 57 Tu 1 . - CDS 125990 - 127102 736 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 127161 - 127220 2.8 + Prom 127032 - 127091 3.2 118 58 Tu 1 . + CDS 127139 - 127690 303 ## COG0212 5-formyltetrahydrofolate cyclo-ligase + Term 127907 - 127941 -0.8 - Term 127503 - 127543 2.5 119 59 Op 1 . - CDS 127694 - 128989 1258 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 129017 - 129076 6.7 - Term 129026 - 129064 6.1 120 59 Op 2 . - CDS 129081 - 130271 1608 ## COG0192 S-adenosylmethionine synthetase - Prom 130394 - 130453 4.9 + Prom 130355 - 130414 3.6 121 60 Tu 1 . + CDS 130494 - 131390 748 ## COG1560 Lauroyl/myristoyl acyltransferase + Prom 131540 - 131599 2.9 122 61 Op 1 . + CDS 131643 - 132476 684 ## COG0253 Diaminopimelate epimerase 123 61 Op 2 . + CDS 132473 - 133150 514 ## Tint_2230 protein of unknown function DUF484 124 61 Op 3 . + CDS 133159 - 134385 595 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative + Term 134390 - 134437 5.8 + Prom 134425 - 134484 4.1 125 62 Op 1 2/0.219 + CDS 134521 - 135648 1113 ## COG0523 Putative GTPases (G3E family) 126 62 Op 2 . + CDS 135681 - 136394 927 ## COG1734 DnaK suppressor protein + Term 136414 - 136453 8.0 - Term 136402 - 136439 0.0 127 63 Tu 1 . - CDS 136461 - 136667 322 ## gi|302861011|gb|EFL84086.1| cation-transporting ATPase, P-type - Prom 136693 - 136752 2.6 + Prom 136639 - 136698 1.8 128 64 Op 1 . + CDS 136762 - 137655 1047 ## COG0548 Acetylglutamate kinase 129 64 Op 2 . + CDS 137670 - 138269 476 ## COG1309 Transcriptional regulator + Term 138289 - 138325 8.7 - Term 138276 - 138311 8.5 130 65 Op 1 8/0.031 - CDS 138334 - 139824 1527 ## COG0793 Periplasmic protease 131 65 Op 2 . - CDS 139876 - 141252 646 ## COG4942 Membrane-bound metallopeptidase 132 65 Op 3 . - CDS 141264 - 142013 915 ## COG0588 Phosphoglycerate mutase 1 - Prom 142040 - 142099 3.5 + Prom 142111 - 142170 4.4 133 66 Op 1 4/0.125 + CDS 142229 - 142666 470 ## COG0607 Rhodanese-related sulfurtransferase 134 66 Op 2 . + CDS 142716 - 143228 767 ## COG1952 Preprotein translocase subunit SecB + Term 143253 - 143290 1.6 - Term 143241 - 143278 5.4 135 67 Op 1 . - CDS 143297 - 143767 412 ## COG0219 Predicted rRNA methylase (SpoU class) 136 67 Op 2 . - CDS 143760 - 144680 674 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 137 67 Op 3 . - CDS 144711 - 145565 541 ## gi|302861021|gb|EFL84096.1| hypothetical protein HMPREF0189_01459 138 67 Op 4 1/0.344 - CDS 145562 - 146215 216 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 139 67 Op 5 . - CDS 146212 - 147675 829 ## COG0248 Exopolyphosphatase 140 67 Op 6 . - CDS 147672 - 148619 665 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 - Prom 148653 - 148712 3.9 + Prom 148589 - 148648 3.9 141 68 Op 1 14/0.000 + CDS 148670 - 149254 537 ## COG0742 N6-adenine-specific methylase 142 68 Op 2 . + CDS 149251 - 149748 343 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 143 69 Op 1 2/0.219 - CDS 149729 - 150151 281 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 144 69 Op 2 . - CDS 150148 - 154056 2954 ## COG0277 FAD/FMN-containing dehydrogenases 145 70 Op 1 . + CDS 154172 - 155737 1458 ## COG1171 Threonine dehydratase 146 70 Op 2 . + CDS 155824 - 156051 222 ## gi|302861030|gb|EFL84105.1| hypothetical protein HMPREF0189_01468 + Term 156074 - 156113 10.0 - Term 156063 - 156101 4.3 147 71 Tu 1 . - CDS 156176 - 156370 201 ## gi|302858734|gb|EFL81831.1| transposase, IS4 family Predicted protein(s) >gi|301349847|gb|ADCQ01000003.1| GENE 1 1 - 190 212 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 63 1 63 190 126 100.0 4e-28 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFDEAF LQE >gi|301349847|gb|ADCQ01000003.1| GENE 2 410 - 988 794 192 aa, chain + ## HITS:1 COG:RSc2100 KEGG:ns NR:ns ## COG: RSc2100 COG2119 # Protein_GI_number: 17546819 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 1 183 15 198 204 188 54.0 5e-48 MEAILVAIGAVALAEMGDKTQLLAFLLASRFKKPTPIILGILVATIFNHSLASALGAWIT HVFSPEVIKWIIVGSFLAMAAWILIPDKGDDDALKNHSMRFGVFGVTFITFFLAEMGDKT QIATVALTVKYATPVLVVIGTTIGMLIADVPAVWIGDKLAQKIPVKLIRIASAVLFATIG ILAAFEYTPTEL >gi|301349847|gb|ADCQ01000003.1| GENE 3 1079 - 1849 794 256 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860889|gb|EFL83964.1| ## NR: gi|302860889|gb|EFL83964.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 256 1 256 256 439 100.0 1e-122 MSVRKLFAGLLFSGISLLALSGCAVGPENNNPTQLTAQWVDPAATFEQKTITGLLVAAVV ENPTNRRIFEDIACDVLALHGIPSTPSYRAIPQASNLTILGGGLNYSALFSAARLAKASN VLAIHQTGTKTNVIYDPGMTWGPDPFWGPGPWGGPFGPDPFWGGWAIPPSITQQNIIESN TELVSVKTGAVLWTGAFSTVSNQAPITQALQEYVGMVLQAILNNGFLIPVSMPNYQIQPA AKFNPQSAGNAGALPR >gi|301349847|gb|ADCQ01000003.1| GENE 4 1806 - 2357 427 183 aa, chain - ## HITS:1 COG:no KEGG:Aave_2832 NR:ns ## KEGG: Aave_2832 # Name: not_defined # Def: hypothetical protein # Organism: A.avenae # Pathway: not_defined # 27 168 33 174 191 123 41.0 4e-27 MRALTIFKQKDLPAETKLKEIPPDEQAILDCIARTKKFVTQRALVTAGASAIPIPGINVT VDVTMLISILNFINQEFGLTPQQIQHLSTDKQVQLFQLITVTGSAWAGKLITKSLVLAVL KKLSIQLTAAQAAKWLPIAGQAAAAGLSFAALKWIGNQHIQDCARIARLFNEEGRPRSRQ TAD >gi|301349847|gb|ADCQ01000003.1| GENE 5 2424 - 2531 100 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVQSQGEKIHLSIYCVQQRRLSGGLTKISRTICAA >gi|301349847|gb|ADCQ01000003.1| GENE 6 2502 - 3797 1153 431 aa, chain + ## HITS:1 COG:RSc2900 KEGG:ns NR:ns ## COG: RSc2900 COG0373 # Protein_GI_number: 17547619 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Ralstonia solanacearum # 1 429 1 432 435 413 52.0 1e-115 MNLFALGLNHNTAPLALREKVAFSSEELDTANLKIRAMLGNPAGGGIKEVAILSTCNRTE IYCAAEDSELASKKLKEFLAESKGVKFNELEEHLYVFLNDDAARHAFRVASGLDSMVLGE TQIVGQMKKAVKTAQKNHGLGVFLNYLFQKTFAVAKEVRSKTEIGAHSVSLAAAGVRVAS SIFGSLENSSILFVGAGEMIELCAAHFCAQKPKNIAVANRTVARAAALAETIGAKAVGLV DLPEILPKYDILITCTASTLPIIGLGMVQSALKRRKHRPIFMIDLAVPRDIEREVDDLDE VYVYTVDDLGKVVQSGIQGRKAAVEQADRLIETKVDEFKCWMTTRSSIPQILSLQERADA LRMMELEKAKKAIQKGGDANEILEAMSHGLMKKFIHDPLTVLRNDPNLSQEDYEKVLHLL DRFYHYHIHHR >gi|301349847|gb|ADCQ01000003.1| GENE 7 3894 - 4976 1181 360 aa, chain + ## HITS:1 COG:RSc2901 KEGG:ns NR:ns ## COG: RSc2901 COG0216 # Protein_GI_number: 17547620 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Ralstonia solanacearum # 1 358 1 358 360 464 67.0 1e-130 MKDTMRSKLTQLVRRLEEIDQNLQDPDVTSNMDQFRALSKERAEIEPVVLKAKEYEQAEE DLAAAEEMLSDEEMKEFASEEIKATKKAIEQISSELEILLLPKDPNDEKNIYLEIRAGTG GDESALFAGDLFRMYSRYAERQKWQVEFVSASPSDLGGYKEIVVKIVGQGAYSKLKFESG GHRVQRVPETESQGRVHTSACTVAVLPEADEIGDVVIDPSELRIDVYRASGAGGQHIQKT ESAVRITHLPTGIVVECQDERSQHKNKERAMGVLISRIHAAQVAEVQAKESSMRKSLIGS GDRSERIRTYNYPQGRVTDHRINLTLYKLDSIMDGDLDCLISPLTTEHQAELLAALAEGE >gi|301349847|gb|ADCQ01000003.1| GENE 8 4979 - 5782 181 267 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225138791|ref|YP_002706825.1| protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific [Stenotrophomonas sp. SKA14] # 28 220 38 245 309 74 31 3e-12 MTTVREWLFSSSLDSIDKSFMLEHVCGMDKAAQLIHDDRVLSSDEERKLNDIAKKRSEGV PLPYLLGTQEFFARPFLVNPSVLIPRSDTECLVEWLIEHLPKNALVCDLGTGSGCIAATV ALERPDLTVWASDLSESALAVAQANCKALGADVKLVQGSWLDPYPAELSFDAVISNPPYI ERDDKHLDALRYEPRSALTDESDGLIAYRTILPQIKRKAPKVQLIAVEHGWNQGEAVRSI FEENGFKGSATFRDYGNNPRFTTWIKN >gi|301349847|gb|ADCQ01000003.1| GENE 9 6022 - 6408 241 128 aa, chain - ## HITS:1 COG:RSc2925 KEGG:ns NR:ns ## COG: RSc2925 COG2969 # Protein_GI_number: 17547644 # Func_class: R General function prediction only # Function: Stringent starvation protein B # Organism: Ralstonia solanacearum # 6 118 5 114 165 97 46.0 7e-21 MANLPSMTPYLIRAFYEWSVDNDFTPQLAVLAEPEDYRVIVPSNYVTNNEIVLNISPTAC DSLQLGNDLITFKARFAGKVESISIPVDRVKAIFIREEGYGMRFDVEPMKKPKMSGDQSK RGFVKVED >gi|301349847|gb|ADCQ01000003.1| GENE 10 6419 - 7033 410 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|68250027|ref|YP_249139.1| stringent starvation protein A [Haemophilus influenzae 86-028NP] # 1 195 7 200 212 162 40 9e-39 ERPMMVLYSGSTDPFSQRCRFVLFEKGMDFEIRDIDLYHKPEDINVMNPYGEVPILVERD LVLYESNIINEYIDERFPHPQLMPPDPVERARTRLLLFNLEREIFKHVHTLENRASSDEA RVKAREAIRDQLTGLAPAVAKKKYLMGDEFSMLDIALAPLLWRLNYYGIELPPAGMPVQK YAERVFSRPAFIEALTPSERVMRK >gi|301349847|gb|ADCQ01000003.1| GENE 11 7225 - 7686 589 153 aa, chain + ## HITS:1 COG:mlr5692 KEGG:ns NR:ns ## COG: mlr5692 COG1970 # Protein_GI_number: 13474738 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Mesorhizobium loti # 12 128 19 131 157 112 52.0 2e-25 MEKVQKQATTFFKEFQAFISKGNVVDLAVAVIVGAAFNNIISSLVKDIINPILGALIGKP DFTNLFWVMKMPADYTGPMTYDALTKAGANVLGYGAFLTAVINFLLLAFVIFCMLKALSS MRRKLELEAEKATPPTPENIVLLREILAELKKK >gi|301349847|gb|ADCQ01000003.1| GENE 12 7728 - 11267 2161 1179 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860897|gb|EFL83972.1| ## NR: gi|302860897|gb|EFL83972.1| hypothetical protein HMPREF0189_01335 [Burkholderiales bacterium 1_1_47] # 1 1179 1 1179 1179 2155 100.0 0 MPRKNISDMLHRSVAGAVLLSICHFAAAEAVNTKPDKFNFWESEDLTWWSEESTEEETEK FLSAFSQGTPVLTNVEWDVAEQLINDLQEDLPKLKYGFINEGVESALLTFSSHHVSISSS EPITINRELDLKILDVNHEGSASRVLGIQTIPDSQFQVNFEKAVNLEIQRLNGTGFLAIS VADGTELHFLDKLTVKDYSSAPALLVQVGEHTRNSVRSLFQLSGPSSFKTLGTAFNLESS ACLKASSSLNIEAGKVFTGNGKVIADGAEVYLKGDLGDFGGIYQQIGGTLEIVSDTQLKH ESWNLADVQFTSESKNIFTVSAKDFVSDMSVGATLLFGEIAEKWSKPFSKITLTDEKASL EYLNKASDAYKKAELIFTGEVFIDENSGYIHKVTLNNHYGLLDKPNMALASVRLDLEGSD KLTGQTIRIGSLTSGNTNHLKLNNSDIALYAPGPVAAIDEKIKIVGLTNSSSLTIHGITE ESRGKTGKAHLTAAVYVEDGSKLNFSGSVLTFENALIVNEGETNFKELSNTELHASLYQT AGKLDVGAGAEVLSDKSVEVTGGGMNVAGVLTSNTLVVQNAEANVAGSLKTGTLTLGTKN KGLSQTTLSLTKGGQAQFDQAEIFGSNISIGGAPDSEQKASLYLKKWEGRDNQIKVANGG VLILGDDASGDGNGYGVPETLSILEQFGNPSKAVLVVNETQVLGNGNIIRLGNAATRAGE TGVVFGGGSALLMRGRADAPVFTSAADGSLSFQPNSSIFVVDPFGSNQLTDTTVSEINGR SDVNLVSLNPNLSLKLENVAGEGWFIKHGEINSQNFVYPELQGWLYDNPEGFTVDSLNAA QKFFARVDNEAYFNPQQSHKLIKEATQLGSLLGTRLNTLRVRGESMKKTLGELHTIMEKK EPGIYMFGDVGGGLFFSNNLGGYLGSSRYRATSETVRIGAAGKNAAGLSWSVSLDGGHVS SKSRHTVLDASGKQNIFGLSLSVGKRFEKISAALNGSVGHSKGKITSSLPGSMQMDKLKT RVPETLFNVGGDVAYALTDELSIAASPQLWVFPKATEKTSIGSQNAFRLKNKAQVFAEVP LSLRGSWTIPSAADTKIRLKGELGGSVKVGKLSKESRLFAVGTEAKEDISQKNFRRWNGF GTMAVSVKQGRFEGGLAASAATGDGKLDAALTARANWNF >gi|301349847|gb|ADCQ01000003.1| GENE 13 11304 - 12056 400 250 aa, chain - ## HITS:1 COG:PM0183 KEGG:ns NR:ns ## COG: PM0183 COG0327 # Protein_GI_number: 15602048 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 1 249 1 250 251 238 47.0 8e-63 MKIQKLLEALNELLEPEKFRDYCPNGLQVQGKKEVKNIVCGVSASEALINEAVKRDADTI IVHHGYFWKNENPRIIGIKRTRIKKLLEHDINLIAYHLPLDANEKVGNNHELGRLLKLKD VTPLPDEPLVLQGEFDPPVTIEKLTDKLTEVLWRVPYVVPVDSPPSIRRVAFCSGAAQDY LEKAADAGAQAYLSGEISERTVLEARELGVPYFAVGHHASETLGIRALSQWLATRFPQLN VSFVNIDNPI >gi|301349847|gb|ADCQ01000003.1| GENE 14 12117 - 12521 728 134 aa, chain - ## HITS:1 COG:no KEGG:HCH_05069 NR:ns ## KEGG: HCH_05069 # Name: not_defined # Def: hypothetical protein # Organism: H.chejuensis # Pathway: not_defined # 8 117 3 112 127 107 52.0 1e-22 MTEEVKTEAEKGQEQMDAANLFREEIYTDRKIGVIRCLVPVTAEGKVDESRKVIYTGEAQ IMTQMGALPISFDIEADNLAAAVANYREAAKAGVEKTMKELQELRRAAASKIVVPGQPGF TPPEGAGGSGLVMP >gi|301349847|gb|ADCQ01000003.1| GENE 15 12617 - 13051 568 144 aa, chain - ## HITS:1 COG:RSc1359 KEGG:ns NR:ns ## COG: RSc1359 COG0589 # Protein_GI_number: 17546078 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Ralstonia solanacearum # 1 144 25 168 168 134 48.0 4e-32 MYNRILVPTDGSELSDKALEAAADFAKALGSSIVIITVIEPYSYTNLSEYRPESIDQYDS RVKEMAQERLEIARELVEKKDINCEVVAFKSFSPAEAIIDAANEYNCDLIFMASHGRQGF AAVLLGSETQKVLTHSKIPVMVYR >gi|301349847|gb|ADCQ01000003.1| GENE 16 13120 - 13905 561 261 aa, chain - ## HITS:1 COG:RSc0774 KEGG:ns NR:ns ## COG: RSc0774 COG1179 # Protein_GI_number: 17545493 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Ralstonia solanacearum # 10 257 18 299 300 220 44.0 2e-57 MAEENKYPLDYERRFGGVAKLYTKDGAERLKNAHVCVVGLGGVGSWAAEALARTAVGRIT LVDLDNVAESNTNRQLQAMTGVYGKPKVDATAERIRAINPLCDCRKIEDFIEVETAESFL PEDAIILDCIDNVKVKAAMAAVCKKRKQFMVACGAAGGKTSAMNIIHEDLARTTGDPLLS RMRYDLRKKYGFPKLKAGKRVEKFGIPCVYTADPVKRPEGVCDVGTGLSCAGYGSSVVVT AALGLAAASVAINHITGTDSK >gi|301349847|gb|ADCQ01000003.1| GENE 17 14060 - 14959 1079 299 aa, chain + ## HITS:1 COG:MJ0577 KEGG:ns NR:ns ## COG: MJ0577 COG0589 # Protein_GI_number: 15668757 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Methanococcus jannaschii # 2 142 7 160 162 68 35.0 1e-11 MKILVPIDGSEFSKHSIEFVTSRATLLGHNPEIELLSVQAPVPARASKLIGNGSLSGYYD EEANVILEPAIEALKAAGVKATARYAVGEAAPTIAKVAEESGADLIIMGSHGRSALKGLL LGSVTNSVLALCDKPVLILRNKPAPTNDSLKVGVAIDGSKYGEAAVEHILKNHDIFGDHP TFYLMNVVSDYAGVVMPDMAGMALPTMNESEVRAMQQESFDEAVGPSRKAFQDKGFKTEE ICLVGNPGDEIAAFAKNEGLDLIVMGTRGYGAFKAAVLGSTATRIAAISDTPLLVIQAN >gi|301349847|gb|ADCQ01000003.1| GENE 18 15032 - 16270 976 412 aa, chain + ## HITS:1 COG:no KEGG:Rmet_2641 NR:ns ## KEGG: Rmet_2641 # Name: not_defined # Def: major facilitator transporter # Organism: R.metallidurans # Pathway: not_defined # 7 384 14 386 396 244 36.0 6e-63 MTKILKIVAFMALLHCGFTSSRVISTLYALNYGQPAWMVGVILSTYAAIPALISIHVGKF IDKIGVRIPITVSFLMISAACLMPILFPYEKFGFWPIIVTSLLAGTGFVFTLISGQGLIG HLSNNKNRATAFTYQSIAFSISGSTGPVVAGYLIDHGSYYWAFGGALTFALLGGGIFLFQ ARALPSAFNKSQAKDNRHHSAFELFKDEKVRNVLLASAFVSMAWDLQAFMIPVYGTEIGL DAVAIGWLLSTFSICTFAVRVFMPILSQIFKEWSIIIFVMISAGLTYIVFPFTTSLTLLF LLCGWLGASLGASQPNVLSLLHQVTPDGRVGEAIGIRTMLMNASHAILPLLFGFGGSVIG AASAFWATGALMVGGGAKIGYSVRNMRDPAEKLVEDKAIEREENIDFKKNDK >gi|301349847|gb|ADCQ01000003.1| GENE 19 16458 - 17144 497 228 aa, chain + ## HITS:1 COG:RSc3161 KEGG:ns NR:ns ## COG: RSc3161 COG2197 # Protein_GI_number: 17547880 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Ralstonia solanacearum # 8 225 15 229 231 115 36.0 5e-26 MNTGETTVLVVEPDLDTQRVYRQRLIHDPDIKLIGICSSIASATALLAQTNCDILFTELN LPDGDGLDFIRRASEDLAVQSIVAVTSKNSAADIATAIENGAVGYITKQDSDLHDVGNYI RILRAHGSPMSPTAARVLVDALRRKPTVKPVVSVAASRPAVANPLSPRETEVLNLLARGM SFAEISSVLNISCHTVTAHIKKIYRKLQVHSRGEAVYEAAQLGILPAM >gi|301349847|gb|ADCQ01000003.1| GENE 20 17194 - 17673 645 159 aa, chain - ## HITS:1 COG:RSc0560 KEGG:ns NR:ns ## COG: RSc0560 COG0315 # Protein_GI_number: 17545279 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Ralstonia solanacearum # 1 156 1 156 158 211 68.0 5e-55 MSELTHFNQAGEAHMVDIADKDQTHRIGIAEGWISMHPETFALVEKGNAKKGDVLAVARI AAIMGSKKTPDLIPLCHPIALTHVNVDFELYPEESKVRCVATCETKGRTGVEMEALTAVQ VGLLTIYDMLKAVDRGMCMTDIRLLEKHGGKSGDWVLKK >gi|301349847|gb|ADCQ01000003.1| GENE 21 17771 - 19255 1415 494 aa, chain + ## HITS:1 COG:RSc0561 KEGG:ns NR:ns ## COG: RSc0561 COG4783 # Protein_GI_number: 17545280 # Func_class: R General function prediction only # Function: Putative Zn-dependent protease, contains TPR repeats # Organism: Ralstonia solanacearum # 25 484 76 547 561 287 39.0 3e-77 MTLKPLLSLCLSCLLAAAPAAGTYAQNYNLPNLGAAGGSALSPMQERQLGEEIMVEVRSD PTYLNDPETIDYLMRLGYKLVSAGPGSSYSFFFFPIRDPSINAFALPGGFIAVHTGLVTA ASSESELASVLSHEIGHVTQRHIARMIENQKGNWAATLGSLLVAILAARAGSADGAAASV IGTQAALAQNYLSFSRDAEREADRVGFNSLVRAGFDPKGMENFFERLDFNNRAYEGSRAA PAYLRTHPLTIDRMSEAQNRSRMAGKRNHKDSLDFFLIRARLRVLQSNRYQGWSDAADYF RNELKTATGYQAIGAHYGLAVAAQRMKNKAEALKQIEIAQKMAGGNSAIINKLHSNLVFE SSPENRSRGLQLAKSAQQKSPLSTMLVLNYGDLLLRDKKYNDLLNFLRRQHALSKSTVEY QSFLGQAYEALGKVSQSHQAIGEMYALQGQRVAAIQQLSLAQKANDGDFYTMSEIDARLR ELRRDEDFDRKHSN >gi|301349847|gb|ADCQ01000003.1| GENE 22 19414 - 20457 1323 347 aa, chain + ## HITS:1 COG:mll0792 KEGG:ns NR:ns ## COG: mll0792 COG0492 # Protein_GI_number: 13470952 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Mesorhizobium loti # 1 341 1 341 343 370 54.0 1e-102 MNNPIETDAVIIGAGPVGLFQVFELGLLEMKAHVLDSLNHPGGQCVELYPDKPIYDIPAV PVCTAKELTENLLKQIEPFKPTFHYGEEAQVLKKLDDGRLYVKTSKGTEFLAKAVFIAAG VGSFQSRTLKVPHIEQFEGKQLHYRVKNPEIFEGKNIVICGGGDSALDWCLNLVSKAESV VLVHRREGFRAAPASVSKMKELCDNWEMQFEVGQVTGFTEENGQMTEVKVTGADGVTRRI PAEHLLVFFGLQPKLGPIADWGLTLERKQIVVDTARFETNIPGVFAVGDINIYPGKKKLI LSGFHECALAAFAASEYVYPEKRVLLQYTTTSPKLHKVLGVETPHFD >gi|301349847|gb|ADCQ01000003.1| GENE 23 20539 - 21612 1383 357 aa, chain - ## HITS:1 COG:RSc2379 KEGG:ns NR:ns ## COG: RSc2379 COG0489 # Protein_GI_number: 17547098 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Ralstonia solanacearum # 3 357 6 362 362 426 60.0 1e-119 MQEKIREVLSGVIDPNTGKDLVSSKALKKVTTEDGKTTVQIELDYPAKTQGSVIEEMVRA KLVEAGIPADVKISQNIIAHEVQRGVKVFDSVRNIIAVSSGKGGVGKSTVSANLALALQQ EGAKVGLLDADVYGPSQPTMLGITDKPYSVDGKTLEPMVAHGLQVASVGVLIDPDQPMIW RGPLAVSALQQLLKQTNWKDLDYLIVDMPPGTGDIQLSLSQEVPLTGAVVVTTPQDIALM DARKGLVMFEKVNVPILGIIENMATHICSKCGHEEHIFGEGGAAKMAAQYGVELLGELPL DINIRLSMDKGEPIVISDPDSKVAQAYREIARKLAVAVSKKNKDYSAKMPSIKVSDT >gi|301349847|gb|ADCQ01000003.1| GENE 24 21756 - 23858 2265 700 aa, chain + ## HITS:1 COG:RSc2381_1 KEGG:ns NR:ns ## COG: RSc2381_1 COG0143 # Protein_GI_number: 17547100 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 564 1 557 574 694 57.0 0 MTNRTIFLTTALPYANGNFHFGHIMEYIQADIWVRHQRMCGSTVHFVGADDAHGAPIMIS AQKKGVTPQEYVAEISAGRAKYLDGFFIRFDHWHSTDSKENTELAQDIYKRLKKAGLIYS KEIEQYYDPVRQMFLADRFIKGTCPKCGAPDQYGDSCEVCASVYRPTDLINPYSALSGSK LELRKSKHFFFKLSDPNCVEFLRQWTRSTAPDGTPRLQSQIVAKTAEWLGKDGDLSDWDI SRDAPYFGIEIPDEPGKFFYVWLDAPIGYLASLKAYCESKGINFEALLETSTTEQIHIIG KDIAYFHTLFWPAMLHFSGKPFRVPDHVWAHGFVTVDGQKMSKSRGTGLDPLVYLELGMD PEWLRYYFAYKLNSKVEDVDFSSADFISRTNSDLVGKYVNIASRSAGFLVKRFEGRVSDP AIAESSLIAEIKAAAPDINASFEDREYGKALRAVMELANKVNEYVDQKQPWELAKQPERA AELHAVCSVTLEAFRLLTLFLKPVLPRTAENVETFLNCGELTWNSVDNALSSDKPINPFK HLMKRVDEKQVQQLFELSSKAAKAASEPAKEEKKAEAESEEFVFEPLAPNITFDDFAKVD LRIGKILDCKKVEKSRKLLQLTIDVGEKEPRNIFSGIAAYYKPEDLIGKLTAVVANLEPR KMMGSFSQGMLLSASDGADTPSGLYLLEPFPGAKPGMRLH >gi|301349847|gb|ADCQ01000003.1| GENE 25 24081 - 25835 1790 584 aa, chain + ## HITS:1 COG:BS_yvdB KEGG:ns NR:ns ## COG: BS_yvdB COG0659 # Protein_GI_number: 16080519 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Bacillus subtilis # 27 547 7 518 530 359 41.0 9e-99 MSARSHIVEALHRFPLARFEPASLCILKNYSFSTFTSDLSAGLTVGVVALPLAMAFAIAS GMTPESGIYTAIIAGFLISLLGGCKVQIGGPAGAFIVIVYGIIAQYGVGNLLIATFFSGI FLFLMGLFKIGSFIRFIPVSIVIGFTNGIAVLIGLSQIKDFLGLNIAKMPADFFHQIETL AGAINTVNPYAVGLGLASLIIVFVWPRSWTIGGAPWRRWLARIPSTVVVLIVMTALVSLF NLPVETIGSKFGGIPQGLPKFEVPDISWGNVKQLLGPAITLALLGAIESLLCARVADAMT DERHDPNQELMGQGIANCIVPFFGGLPSTGTIARTVTNIKSGAVTPMAGMIHSLTLLVII LVAAPLAMNVPLCALSAILLFMAFNMGNWHEFVRLRQFTMSYKATLLVTFFLTVIFDLTV AVEIGLLTAALFFLYRMNTLTRVIPKTLPFDAPKQIEAWAMEGALFFGSVSKLEIVTDPK HISAPDAPDVVIFDFTDLLSIDNSALDIIESFQRNLVKHGKILIVVGASEHPLRQMRRLG LAQRLGKYMCPDMETALQLAREAIYKKEEPNPNPREEIRIVEHK >gi|301349847|gb|ADCQ01000003.1| GENE 26 25976 - 26824 666 282 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860911|gb|EFL83986.1| ## NR: gi|302860911|gb|EFL83986.1| hypothetical protein HMPREF0189_01349 [Burkholderiales bacterium 1_1_47] # 1 282 1 282 282 582 100.0 1e-164 MGNVSTEWLAAISTGRDYSIDEKKKGCAVPVTPWLHPPVGKRLRDLITKLGTVRELERQE ILYPQGRKVSDIVLVQQGVTARNFGNAVSGPKAAAISTPGHFACGNLNFLTRRPSLGTYF ALTKAQVVICPKDLLLPVLSTDPELFAYTIRLLESCTLSDRVGFALLAFSPVDLRLKAFV VTWAIHYGKLSADGFIKCPIPLTRNNRCLVANASPVSTDNALKRWKEEGAWVRDGDFVTF PADFVDDAYQWMRSAEESSEYAYPNTFRELMEALPPLTNPWY >gi|301349847|gb|ADCQ01000003.1| GENE 27 27057 - 28574 2099 505 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 17 503 20 480 484 201 34.0 3e-51 MTFTRRTFMETTCALSAGLVFGSLAHASTKVPEKWDETCSLLIIGTGFAGLGAALESHYL GMKDILVVDKMPSAGGNSIINGGAIAAAGTDMQEKAGIKDNADLLYSDILKAGGGLAHKE LARRIADESVSNYKWLRDEVGVKFKAVTYHGGHSVPRSHAVMENSGAGFINPMLAKCKEF GIKIQLRTIVDDLIVNDKGCVVGVKARINHRFNRPDSGRVVYIRATKGVLIASGGFSQNV KMRTSHDPRLTDAFGSTNHPGATGEMIQEAQALGANTIHMDWIQLGPWTSPDENGFGLAP LAVESMVGYGPMINPTTSKRFIKETGNRKVRADAIVALGKPAIIYTCEANMMNKVVGKNM KPEQFETALKNGVIRKFDDLKSLADFYKLDYSTLEKENEKFNGYMKAMKDPEFDCMFFKD AVLNTKGPFYAIRLWPRVHHTMGGLEINEKAQVLDVKGNPIAGLYAAGEATGGVHGMVRL GTVAVADCIIFGRIAARTANGWAGC >gi|301349847|gb|ADCQ01000003.1| GENE 28 28628 - 28984 388 118 aa, chain + ## HITS:1 COG:no KEGG:Sputcn32_3388 NR:ns ## KEGG: Sputcn32_3388 # Name: not_defined # Def: hypothetical protein # Organism: S.putrefaciens # Pathway: not_defined # 14 115 9 113 116 65 38.0 7e-10 MTPLNSLTKLLGIGLLAAMFSCSAFAADAPKMGADKHVAKGVACQTCHGTDLKNPNLPTE ETCTQCHPKAALIEKTKDLPGANPHNAPHNGDCVNCHLMHEPPEDYCAQCHKFNFKVK >gi|301349847|gb|ADCQ01000003.1| GENE 29 29017 - 30162 1247 381 aa, chain + ## HITS:1 COG:RSp0955 KEGG:ns NR:ns ## COG: RSp0955 COG3203 # Protein_GI_number: 17549176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 381 1 368 368 100 28.0 5e-21 MKSTKIIAALACSFCGSVYASDVSIYGMVDAYVQLYNGGNGTVVDFGSGGKGGSRVGIKG TEDLGGGTSVFFRLENGFFVDNGTNTTAAQPEGWAFQREAVLGIRNTDWGTFSFGRQYTL NFGGIAQFDAFACSLGSTINNFMAPAPYLPNNHIPGINGASGVDNLTRRDNSFVYESPSF GGLKLSAMVSLGEQNKLNSESEMSNKYGNSYAAQAVYRKGAFGIGFTYTYQNLAAEAPNN LKDPNAHAALYNLGASYDFGFTKLYGNLVYKNGSKAAVRDTNPNIMVYSVSTKTPLFSGS LLNGFAYLKNNTTDSANAWNVSARYDYPLSKRTTLYAGAAYLNNEKNVNYTINGGGGTSS APTTNMGKNPWTTFVGMNHTF >gi|301349847|gb|ADCQ01000003.1| GENE 30 30259 - 31884 1345 541 aa, chain - ## HITS:1 COG:STM1566 KEGG:ns NR:ns ## COG: STM1566 COG0281 # Protein_GI_number: 16764910 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Salmonella typhimurium LT2 # 7 538 17 557 565 441 43.0 1e-123 MKNISVGTEALDDPFVNQGTAFSQDARIKRKLRGLLPPRVTTLEHQAKRALERIHQAEEP LQKYEILSLIRHRNATLFYYLLENNIEELMPIVYTPTVGKACQEFDRIYTEPEGLYVTIE DKGSVQEVINNWPHDDVDMIVVTDGERILGLGDLGAGGMGIPIGKLSLYTACAGLNPARS LPVLLDVGTNNQGLLHDPLYLGLQQLRVDGEEYYAFVREFIEAAKARWPHVIIQFEDFAN RHAFALLDQWKDKTACFNDDIQGTAAVAVAGFYAAARVKGSSLSEEKFLFLGAGEAAGGI ADLLVEAMMKEGLTQEQAVDRIFLFDSHGLVTKDREGLTPLKQKFAHEQEPQSTFLDAIG EVKPTAIVGCAAQAGSFNAYVLSAMARINERPIIFALSNPTSRSECTAREAYTYTEGKCL FASGSPFPQVEVNGKTFIPRQSNNSYVFPGIGLGLVVSSPRIVPQSVFLSAAEALSKIVS EDDLENGSLFPSLTKIREVSQSIAAAVAEQCFTAGVAGVPKPDDLSKAIQEAMYKPVYDR I >gi|301349847|gb|ADCQ01000003.1| GENE 31 32019 - 33239 1151 406 aa, chain - ## HITS:1 COG:VCA0526 KEGG:ns NR:ns ## COG: VCA0526 COG0038 # Protein_GI_number: 15601286 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Vibrio cholerae # 11 402 72 466 468 183 36.0 5e-46 MELTTWAHSVSFWEGFGAVLLVCVACAVIGRFLVRFAPTAGGSGIQYVEAAWREEVEPAR FKILLVKFFGGILTLGSGMALGREGPTVQMGASIGATIARILKFSKEELRFLTIASAGTG LGVAFSSPLGGAMFTFEEVTKDIRMNLVIPTLICVFAGCTVSMTILGMQPDYNVINRTFM IPGVKESIAFILFGIFIGVMGPLYNKMVLILLNTNAYFTKVIPEVKAGIIGIVVALLVYF APGLAGGGDQLGTEMLNYTFPIATVLVIGLIRWFFAPLCYATGVPGGLFSPLLLMGGILG HVFAWTLNLIGFDLNPMAFCAVGMSAFFASTICAPITGVLLILEMTACWDLTLPMLIGSA LAFFTAQVLKSQPIYTALRLRIPEVKQMQQQGVDVFQPPAIPEKLS >gi|301349847|gb|ADCQ01000003.1| GENE 32 33258 - 33410 64 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQEELEVSAYRSGAEPRKQTYQIKPTFTRKGHDPSFGDTPPSSKFSLDLL >gi|301349847|gb|ADCQ01000003.1| GENE 33 33505 - 34197 646 230 aa, chain - ## HITS:1 COG:RSc0737 KEGG:ns NR:ns ## COG: RSc0737 COG1729 # Protein_GI_number: 17545456 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 5 230 33 270 274 98 29.0 1e-20 MKRIALVLLGTVLLSVNTSAWALFGDDEARKAILELRDQLKSQQEVQMSLYDRLEKLTKE VQTLRGKVEDLTNSVGKEKQNAETIYDDLSNRLNEMDPKAKAAAAASDREISAKQELDRC LSVFQKGDANQAIKCFSGMTQKYSKTKVYPDALYWLGSSYYMKGNFAQTIATEQRLISGY SKHAKVPEAYLLVGMAQMDSKKTAEAKATFDKLIKLYPKSSAAGLAKKQM >gi|301349847|gb|ADCQ01000003.1| GENE 34 34204 - 34695 665 163 aa, chain - ## HITS:1 COG:RSc0736 KEGG:ns NR:ns ## COG: RSc0736 COG2885 # Protein_GI_number: 17545455 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Ralstonia solanacearum # 43 159 56 172 172 130 54.0 7e-31 MISSRFAICAAAAAVALSLSACSTVDLDKDKAGSITDGTSVEEALSSKTGPLANREVHFD FDSYTVSPDQMPVVTNHAQFLAAHKNLNVRLEGNTDERGGREYNLALGQKRAEAVKERMT LLGVSPQQIETISYGKEKPKAEGHDEAAYYENRRVDIHYMLNK >gi|301349847|gb|ADCQ01000003.1| GENE 35 34709 - 36004 1139 431 aa, chain - ## HITS:1 COG:RSc0735 KEGG:ns NR:ns ## COG: RSc0735 COG0823 # Protein_GI_number: 17545454 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Ralstonia solanacearum # 17 431 16 432 432 386 50.0 1e-107 MVRRDLGLDRRVFLKAVGLAGIAAAEPAFAQLFVNIQGVGANQFPIAIQPFFGNSEAPEN IAEIIGNDLVRSGFFRLVSCDAATALDKDPDWKALSTAGVGAFADGSVTRAADGRYEIKF RLFDPVKKQETDEASYISPKDDLRLYAHKIADRIFERLTGEKGDFATRIAYVSQQGKNNY AIMVADSDGYNPQVALRIRHPIISIDWSPNGRQIAYTSFETGKPTVWIHDLSTGKRRQVA AFRGNNSAPAFSPDGGTLAVALSKDGGTKIYLLDVNGQNLRQFTTGSSIDTEPAFSPDGK YIYFTSDRGGNPQIYRKPVVGGSAERISFGNAYAISPAVSPKNDQVAYIVRTGGHFKLVQ QDLATGNVIPLSEIGKNESPSYSPNGNMIIYASEVGGKGVLSTVSTDGSTRSRLSGTSGD IREPSWGPTIK >gi|301349847|gb|ADCQ01000003.1| GENE 36 36166 - 37734 1963 522 aa, chain - ## HITS:1 COG:RSc0504 KEGG:ns NR:ns ## COG: RSc0504 COG0138 # Protein_GI_number: 17545223 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Ralstonia solanacearum # 4 522 1 524 524 674 63.0 0 MHNMKKQALISCSDKSGVVEFAKALTELGYHILSTGGTAKLIAQAGIPVQEVADYTGFPE MLDGRVKTLNPKIHAGILARRPVAEHMEALKQFEIDPIDIVAVNLYPFEQAIANPNCTFE NAIENIDIGGPTMIRAAAKNHESVTVIVSPGDYRKVIEEIKEKGNVSPETRLELAKKVFV HTAHYDAMISNYLTSMKGNDVSTRTKFPESLTRQWVKVQDMRYGENPHQEAAFYRERNVA PGLLAGYHQLHGKELSYNNIADSDAAWEAVRSFDSPACVIIKHANPCGAAIGMNSEEAYT KAFKCDPTSAFGGIIAFNCEVSKETAEKIAKQFAEVIIAPEFSQGALDILLQKKNLRLLT VAMGHARNDLDMKRIGGGLLVQTPDTQCVSEKDLKVVTKLAPTSAQISDMMFAWKIAKFI KSNTIVFVRDGMTLGVGAGQMSRVDSARIASIKAKEAGLSLEGSVAASDAFFPFRDGLDV IIDAGATAVIQPGGSIRDEEVIAAANERGITMVFTGERHFRH >gi|301349847|gb|ADCQ01000003.1| GENE 37 37842 - 38822 649 326 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148828154|ref|YP_001292907.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae PittGG] # 6 310 1 306 326 254 43 2e-66 MSGATVQVGNVEIPGRVFLAPLAGFTDLPFRQICRKLGAAYAVAEMVASQKHLRESRKSQ ERFSLGSESYPRAIQLLGSDPVDLADTARYAVQCGAQIVDFNCGCPAKKVCSVECGSALL KDEALVEKLLKALTEAVDVPVTLKYRLGWDAEHINALNIAAIAQEAGIKMLVLHGRTREQ GFKGEVDYQRIAEVKASVDIPVIANGDIDSVEKAEAVLAQTGADGIMIGRAAIGNPWIFS QINDKLSGRIPQAPSKSQLIETIGEHLQLHFSFYEKEKGLKTIRKHLSGYFKRLDLCPTL LTDLYSVTDPIQLEKNVERLLQDNLD >gi|301349847|gb|ADCQ01000003.1| GENE 38 38819 - 39529 507 236 aa, chain - ## HITS:1 COG:PA0597 KEGG:ns NR:ns ## COG: PA0597 COG1208 # Protein_GI_number: 15595794 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Pseudomonas aeruginosa # 1 226 1 219 224 141 39.0 9e-34 MKAIVLCAGRGKRMRELTAHNSKPLIKLWGRSMIDWQLDRLKKGGIREVVVNTAHYADLY PPHFAAHPVEGIKVTISQEGTSISDALETKGGIVKALPLLSDGEEPFVVVSGDIVTAFDY ASLEKAADRIRKGEIVGHLVLVPNPSFHDGDMDLKDGLINRADKKYTYGNIAVFSPKIFA GEKPEFSKLFPWLYQFVDQQLVSGEIYKGPWANVGTPEELAKCESMGCFFNETDIS >gi|301349847|gb|ADCQ01000003.1| GENE 39 39541 - 40548 951 335 aa, chain - ## HITS:1 COG:RSc0514 KEGG:ns NR:ns ## COG: RSc0514 COG3178 # Protein_GI_number: 17545233 # Func_class: R General function prediction only # Function: Predicted phosphotransferase related to Ser/Thr protein kinases # Organism: Ralstonia solanacearum # 8 335 18 352 352 356 51.0 3e-98 MTEREVSLKQWLEKIGGSFGLNLKTLRPASSDAGFRSYFRIDGDGTTYIVMDSPREPGNV KPFIFVDDLFAKQGLNVPKIYAQDVEQGFLLLSDLGTQTYLDVLSEDNASRLMDDATTAL VKLQKNSKPGVLPDYSEELLRSELELFPEWYVKRHLNMEITPQMRSMFDKMFDHIIEKNL AQSFVYVHRDYMPRNLMLEEKDNPGIIDFQDAVYGPVSYDIACLCRDAFISWSEAQILDW TIRYWDKARKEGIPVPADFGVFWEDVEWMALQRHLKVLGIFARLNYRDGKTKYLGDTPRF LNYVQKTASRFDALRPLSRFINQISGIEETVGYSF >gi|301349847|gb|ADCQ01000003.1| GENE 40 40670 - 42997 1839 775 aa, chain + ## HITS:1 COG:RSc0515 KEGG:ns NR:ns ## COG: RSc0515 COG1452 # Protein_GI_number: 17545234 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Ralstonia solanacearum # 47 775 89 811 811 450 35.0 1e-126 MEAFRALPVFVAVTLAMPLLVSAAERDQDSETATRPEYGLKLNAARRLDENAPSEEGDAP TYLTAFKMIGTPNEKIELIDSAEVRRGGSVLRGDTITYTFANDEVYSNGNALVARNGTIF KGPELTYHLDAETGEMPNATFRYLPTQMRGTSDKIELLGEGKAKMCNAMVTTCREGEEAW WIKASDIDYDELDGSAVGKNARLYVGGIPVFASPYFSFPVGSERKTGFLTPRFGMSSTLG VNMEVPFYWNIAPNYDYTLTLKPMSKRGVLFGNEFRYLQPTFSGQVDYNVIFKDKETHER RYGVAWKHYQRIGDVSLGVDYQKVSDNDYLSDFSTTIRESSENILNQNFWLSYGQTYWST SIGVYKNQTLRPNRNWVEKPYEKEPEFNLSGYVADFHGAVLDSRLTATRFRRGISTYNGL RGTSGDGNRTLWNTSISYPLMGSYWFITPKITYSLTHYNDIKHARAEIDKSSTRSLPIYS LDTGLIFERNSTVFGRETEQTLEPRLFYAYIPYRNQRHMPNFDSSSADLNFAELFTPNKY TGFDRIANTNQLSAVLTTRYIDSGTGKEWFSATVGQRYYFTDEKVDLYWSNPGKTKNRSD VLAASQFSLFEGWRLEGAIQYSTEWSRISKTSAGIRYNPRDFSTVALYYRYNYNPNDTRD AFYNTNIKQIDFSFQWPLMKDLYGLGRYNYSFRDKKVVDSLMGLEYRAGCWILRGAVQRY IRSEGRSTTNFFLELELVGLGTVGSSPIQALSEGITGYKPIGPKPVEVGRYDYYE >gi|301349847|gb|ADCQ01000003.1| GENE 41 43001 - 44362 1649 453 aa, chain + ## HITS:1 COG:RSc0516 KEGG:ns NR:ns ## COG: RSc0516 COG0760 # Protein_GI_number: 17545235 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 47 450 89 496 498 249 36.0 7e-66 MKLTHLYAVCACALLSLGAVNADNAYAQKAPAKKEAAAAHKNAPVPVDRIAAVVNHDVIT EIQLQQRIHQVATNLRRRNIPLPPMDNLRDQTLDRMILERIIEQKARDTGIRIDDNMLNG AIEQIATNNGLTVPQLEKKLAADGISVPSFKSEIRSELLTQRLRERDVDDKIQIPESEID QYLKDQSGPGKRMEYRLSRIVISFPENPTKAEVEAAQRTASRALEQAQRGADFSQLAAKY SVTPEAMEGGVMGWVPAGKLPPFVVQALQNHKAGDIIPLQAGNSFQILKLTGVRDPGEQA QQGVRQTHVRHIMMRPSNVTPEKVVIQRLNEIKSRLDKGDGDFQTLARLHSADPSGTRGG DLGWLYPGDVPPEMEQQLDKLSVGEISEPIRTPYGWHIFQVLDRRTKSGINERQREQARE ALREQKLGDAVLDWERRLRSEAYVEKRINKPTE >gi|301349847|gb|ADCQ01000003.1| GENE 42 44419 - 45243 825 274 aa, chain + ## HITS:1 COG:NMA0902 KEGG:ns NR:ns ## COG: NMA0902 COG0030 # Protein_GI_number: 15793868 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Neisseria meningitidis Z2491 # 5 255 1 251 259 241 51.0 2e-63 MAEVLKHHKARKRFGQNFLNDDFWINKIAEAVDPKEGQKIIEIGPGQAALTKELIAGAKH IYCVEIDRDLAAWLRTKFTPEQLTVLEADALKFDWRDFAAEEKIRVVGNLPYNISSPLLF KLSEISDRVVDQHFMLQKEVVDRMVAAPGSKAYGRLSVMLQRKYRMVKLFDVPPEAFTPA PKVMSSVVRMIPIQNPAEVDEETFHQVVAASFAMRRKTLKNNLAKWISPEMMEEAGIKPE QRAESVPLENFIRLARLVHAAGISIVLPGQVQPD >gi|301349847|gb|ADCQ01000003.1| GENE 43 45240 - 46511 509 423 aa, chain - ## HITS:1 COG:SMc02768 KEGG:ns NR:ns ## COG: SMc02768 COG1451 # Protein_GI_number: 15963779 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Sinorhizobium meliloti # 213 412 47 235 251 76 28.0 8e-14 MVLGRIFPKITKFYLDGSPAEAEIAYPDKVRRVHIRLGGQEEQITAGPEGVIYITKGYPS ALQIKWALKLQKKKFLPYFKFFEAASLAYPDVSARLSQQDPDFVHHSALEGSYPVRYRIV RSSRRKNTQIAFEGGLLVVHCPARLTDFEVELELQKSASKIIQFLEKMRRGAPAAEKEPA PARAASSIRLADGAEVQIIWQPGKRKSISISMPNSEQLLVKYPSRTSREKVMGWVLSQQA WIQKKRQNSLGKEDSNRVFFEKLSSEQEITLLDVKRKVRLSSVRKESGVFDDEIVLWVKD ANLTRDQFLEVLVKTIKKWALTALQEEFELKLAQMGPFRYPYRKFFLTSAKTRWGSCSSR GHIRIHWNAVFVTKAEREYLYTHEAAHLTEMNHSSRFWQLVEVHCPDYKRARAILHSRTL GFL >gi|301349847|gb|ADCQ01000003.1| GENE 44 46520 - 47248 688 242 aa, chain - ## HITS:1 COG:RSc0522 KEGG:ns NR:ns ## COG: RSc0522 COG0204 # Protein_GI_number: 17545241 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Ralstonia solanacearum # 1 242 7 247 250 191 41.0 8e-49 MLWLRALIFWFLFCITIICYGIVLFVCIPFTSKEGRYAIVKKWCRMVIGLMRTICGVRYE ITGMDKVPATGPVILLSKHQSGWETLAFFALVPRRLSYIYKRELHRLPIFGWGLASLGMF SVDRSEGRTAFERMKREVPEFFAHGWALVLFPEGTRTAPGASVKYKTGGVRLAIATNAPI VPIALNSGECWPKHSFLLYPGVIKVVFGDPISPEGKTPHELNEEVRSEIEGEMKLISPKY YK >gi|301349847|gb|ADCQ01000003.1| GENE 45 47307 - 49397 2578 696 aa, chain - ## HITS:1 COG:RSc0524 KEGG:ns NR:ns ## COG: RSc0524 COG0751 # Protein_GI_number: 17545243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Ralstonia solanacearum # 14 696 14 697 697 613 51.0 1e-175 MASLLIEIQTEELPPKALDNLSKAFAKELAFSLKEQDLALPNAQVTAYGSPRRIAALISD VSEVAPDKPFRQKLVPVKVGLDAEGKATPALSKKMKALGIECEPSELKVVNDGKQDQLVY EGTKAGVSLKDGLQIALDHAVRRLPIPKVMSYQLENGKTVEFVRPVKHLVALFDKEIVPV ELFGLKAGRETMGHRFHVKEPISIKEAEKYAEQMEKEGKIVASFEERKNKMVGELKSAAE KLNAEIIMPDDLVNEVAALTEWPVVYESGFDEEFLTVPAECLILTMQQNQKYFALRDKNK KLMNRFLLVSQIEAKDGGEAIRSGNARVVRARLADAKFFYDQDRLQTLESRVPGLAHVVY HNKLGTQLERSERVQKIASRIAEQIGADPALARRAAKLAKADLRTLMVGEFPELQGIMGE YYAHHDKEDDKVALAIREHYQPRYAGDELPSTPESLAVALADKIETLTGLFGIGQLPTGE KDPFALRRHALGILRMLIEKELPLSLDKLIAIGTEEESVVPGVKDATEELKQFFHDRLRV MQKDQGFTAHEVESVIGSEPAILADVPKRLKAVHDFMSLPEAESLAAANKRIENILKKNT LPLADAVDPALLTEKEEKDLYEAIRTLEPKLEADYKAGRYEDELRSLAPLKAPVDAFFDK VMVNAEDEALRRNRLTLLNELHKAMNQVAKLSCLAS >gi|301349847|gb|ADCQ01000003.1| GENE 46 49411 - 50313 1122 300 aa, chain - ## HITS:1 COG:RSc0526 KEGG:ns NR:ns ## COG: RSc0526 COG0752 # Protein_GI_number: 17545245 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Ralstonia solanacearum # 1 296 1 313 325 477 73.0 1e-134 MLTFQEVILRLQQYWNGQGCALLQPIDIEVGAGTSHTATFLRALGPEPWRAAYVQPSRRP KDARYGENPNRLHQHHQFQVVLKPAPTDIVDRYLGSLRALGIDTEVNDIRFVEDNWENPT LGAWGLGWEVWMNGMEVTQFTYFQQVGGLECKPITGEITYGLERLTMYLQNCDNVFDLVY TKWQDASGEHILTYGDVFHQNEVEQSHYNFEASDPEKLLKQFDYFESEAKRLMDLNLALP AYEMVLKAGHTFNLLDARGAISVTERAAYIGRIRQISRAVAQSYYDSRERLGFPMCQKKE >gi|301349847|gb|ADCQ01000003.1| GENE 47 50362 - 51885 1230 507 aa, chain - ## HITS:1 COG:RSc0527 KEGG:ns NR:ns ## COG: RSc0527 COG0815 # Protein_GI_number: 17545246 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Ralstonia solanacearum # 9 480 32 501 523 286 40.0 6e-77 MKKFLPFLIALFAGIAQGYSLAPANEWLQLAALAVLFFIFAGLRTAKAGFLAGLFFGIGW FVTSLAWLYVSVHDYGYQPPVFAAFVVFIFSCYLALYPAAVGALCAWSMKRGSSAGLMLL AIAPAAWGLTEWLRGVLFSGFPWSAVSYAHVDGSLSAFAPICGADGINFLAAFISGCAAL LLLERKNLKGIAVSCAGLLVVFSLAFALTDIRWSEPYKTLSVRLVQGGIAQDEKFSPMGS LTSFERYVRLMNEKPVPESGLIVLPETIFPIPLQQLKPEIWRKFTHVTNGNAALMFGGFL RGEDGYRNTAVLVEHEKIVQSYTKKHLVPFGEYVPTGFRWFIDMLQIPMGDLLKGTTDQK AFEIDGVAAAPLLCYEDLFASEIREWWQGGKAPNLLVNLSNLGWFGDTHALPQHLNISRM RAMEFARPVIRATNTGMTAYVTSRGEVAAELPAMEPGKLDVKVAAAQGEATPFVKFGALP WLGAMVLLLISAILALLFRKRHRLPLK >gi|301349847|gb|ADCQ01000003.1| GENE 48 51901 - 52773 776 290 aa, chain - ## HITS:1 COG:RSc0528 KEGG:ns NR:ns ## COG: RSc0528 COG4535 # Protein_GI_number: 17545247 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorC # Organism: Ralstonia solanacearum # 10 278 13 279 298 246 48.0 5e-65 MADNKTDEPKEKNFFEKLSDRFFHDDAPETQKELLDDLHIAHDRKLLTDDGMHMIEGVMR VNSLRAEDLMVPRTQMIVIDISENSQDWIKQVIAAGHSRFPVIDGDKDNVLGILLAKDLL RLFINPEYEIRQHLRQAVFVPESKPADVLLKEFRLKRNHMALVVDEFGSVSGLITIEDVL EEIVGEIDDEYDVVNDASDIVAIGGSRWRVKASTHINEFNRVFGTHFSDDRFESVGGLVS DELEHVPQVGESVVLQGFRFVVTKALARQVKMLTVEKLEPEQTEQQPAKA >gi|301349847|gb|ADCQ01000003.1| GENE 49 52806 - 53276 350 156 aa, chain - ## HITS:1 COG:RSc0529 KEGG:ns NR:ns ## COG: RSc0529 COG0319 # Protein_GI_number: 17545248 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Ralstonia solanacearum # 21 148 126 255 255 149 61.0 2e-36 MRKPHVLSLSVQNLAHFPQLPSRGKIQRWISRALENDAQITVRFVEEEEGRELNKTYRSK DYATNVLTFDYQIEPVVEADLVICVPVLEKESKDQNKTLEEHMAHLLVHGTLHAQGYDHM DDEEAEVMEQRETDVLVDLGFDVPYPDRNYTPQPLA >gi|301349847|gb|ADCQ01000003.1| GENE 50 53269 - 54264 867 331 aa, chain - ## HITS:1 COG:RSc0530 KEGG:ns NR:ns ## COG: RSc0530 COG1702 # Protein_GI_number: 17545249 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Ralstonia solanacearum # 20 322 15 317 325 389 66.0 1e-108 MTEAKTKSDQTSLSLDLQINNSDLSSLVGPLDSNLAQLENFLNVEISRRGASFGIKGTQA NCRKAIQALTDLAAIAERKSDELTAEDIQLYLVGQNAPAEELAAEEPVPGLRTNRKGLQG RTPMQRTYIRNILSHDVSFGIGPAGTGKTYLAVAAAVSAFEKGEVERIVLTRPAVEAGEK LGFLPGDLSQKVDPYLRPLYDALFDLLGTEKTQRLLEKQKIEIAPLAYMRGRTLNASFVI LDEAQNTTPEQMKMFLTRIGFGSKAVITGDASQIDLPRGQRSGLIEASHILQDVRGVSMT YFTSADVVRHPLVARIVEAYQKAEKREYQHA >gi|301349847|gb|ADCQ01000003.1| GENE 51 54265 - 55590 608 441 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 10 437 8 433 451 238 34 1e-61 MNAKKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKV FSDLGRVRELKKTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKNE KEHRPQVDISFPEIEKFDHLPTPHADAATAFVSIMEGCSKYCSYCVVPYTRGEEFSRPVE DVLVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEIDGIERIRYTTS HPKEFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKLRAIRPD ISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPGTPAAELPDDTPQSVKL ERLQRLQALNTQHAQEISQSMVGSVQRCLVVGEAKKGEGKLSARTDNNRIVTFNGPENLI GQMVNLKINEVYPHTLGGELV >gi|301349847|gb|ADCQ01000003.1| GENE 52 55686 - 56510 610 274 aa, chain - ## HITS:1 COG:RSc0681 KEGG:ns NR:ns ## COG: RSc0681 COG0639 # Protein_GI_number: 17545400 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Ralstonia solanacearum # 4 251 9 258 283 232 47.0 6e-61 MKTYAIGDVHGCFDTLEQLLQQIPNKSRLVFIGDIVNRGPKSLETIRTVMRMGDRAECLL GNHELHLLAVYAGQRAMSPEDTISEILNAPDCEDIIQWLRNRPLALVDHGFLCVHAATHW SWSVEETLKQASRVEKFIRSDKGLSQIGELFGKQQWSPDLRGKDRLRAVVNVLTRTRYLN ADGTMDFKQKLSPADTPVEYIPWFKFPGRKTAKTPVAFGHWSTLGPVTDVPNVFPLDTAC LWGGALTARRLGRHRETFSVKAPIYRIPGEKRNL >gi|301349847|gb|ADCQ01000003.1| GENE 53 56740 - 57558 979 272 aa, chain - ## HITS:1 COG:thiD KEGG:ns NR:ns ## COG: thiD COG0351 # Protein_GI_number: 16130041 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Escherichia coli K12 # 3 271 1 266 266 253 50.0 3e-67 MQIKHPNVLSIAGVDPSGGAGLLADVKTISSLGGYATGVVTAATAQNTQGVFGVIPIPTD FVKKQIDVLFEDVRIDSVKIGMLFDSNLIKGVAERLRYWNPRYIVLDPVMVAKSGDALLT DDAVATLRDELLPLATVITPNLPEAARLLESVDITDDEQMEAAANDLWKLKGCHGWVYLK GGHMEGVDYSEDLLYDGRHMIRYRAERTMTKNTHGTGCALSSALATLLPSSTDIPMAARE AKRYITQAIIHADELQIGKGHGPVHHFYAQWY >gi|301349847|gb|ADCQ01000003.1| GENE 54 57539 - 58864 989 441 aa, chain - ## HITS:1 COG:RSc0693 KEGG:ns NR:ns ## COG: RSc0693 COG1519 # Protein_GI_number: 17545412 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Ralstonia solanacearum # 5 431 3 434 438 307 42.0 3e-83 MILPRPIYSGLLYAAAPAAMLYLYKRSRKQPQYLEHWSERFGTAHYPPRTKGRTRIWIHA VSVGETRATFSLVESILKRWPNTEILYTHMTPTGREVGAKFAQKFGNRIAQCYLPYDTPR AVKKFLKATQPDLCLLMETEVWPNLTYFTKKFGIPTVLVNGRLSEKSFKQGQKAGSLIKD AFGRLTIALAQYEEDAERLKAAGAHDVKVLGNLKFDFTPNAIQLRTGREILKFAERDIIC LASSREGEEQKFLEALKKAQTAGVLEDRLVLIVPRHPQRFEEVAKLIEKSGFTYIKRSEI RDWKTVLSKQGPQIVLGDSMGEMGFYYALSSLVIMGGSFENYGCQSVIEPCAIGLPVIVG PSIFNFDFIVKKAESEGALLRAADFTEALRTADEVLSDPAKRAEIGEKAAKFAQEQRGAT ERTIQVIDMLLKGDTNADQAS >gi|301349847|gb|ADCQ01000003.1| GENE 55 58861 - 59808 539 315 aa, chain - ## HITS:1 COG:ECs4499 KEGG:ns NR:ns ## COG: ECs4499 COG0859 # Protein_GI_number: 15833753 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 1 275 1 279 330 207 39.0 2e-53 MRVLIVKTTSMGDVVHAVPVVEDIKRFISDAEIDWLVEDSFADIPRHVAGVSEVIECSVR KWKKRIFEKSTRGQIKALCEKLRSKHYDLVIDLQGLIKSAVLASWTNAPVAGYDWRSGKE PLATVLYSIKSSVDRQKSAVDRCRELAAKSLGYDFGSTKPQFNFKFEGSPESVGCVFFFC NTSRETKLWPEEKWIELGAELIRRGKKIVLPWGSPEERDRVLRIQARLGTGAEVPDRMSI GQLMEKISSSDAVIGLDTGMTHLSAAMGRPTVGIFRDYPIELVPLVGEGKKKALGGVGCC PQVQEVLSAFEKVIQ >gi|301349847|gb|ADCQ01000003.1| GENE 56 59819 - 61204 1757 461 aa, chain - ## HITS:1 COG:RSc0691 KEGG:ns NR:ns ## COG: RSc0691 COG1109 # Protein_GI_number: 17545410 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Ralstonia solanacearum # 5 461 3 461 461 523 56.0 1e-148 MAETISRSIFKAYDIRGIVDKTLTEEVCEKVGMALGTLAQKKNVSHICVGRDGRLSGPRL QAALMKGIRKAGVGVYDIGAVPTPVLYFSTVYLKTGSGVAVTGSHNPPDYNGLKMMLADE TLYGPAIQHIYEMIVNNELCTAEKEGPYEQVDVVPAYMEKILSDVKLSRPIKAVVDAGNG IAGPLAVDLLTRLGVEVQGLFTNVDGHFPNHHPDPSKLENLEDLKKVLREGDAEIGIAYD GDGDRLGVVTKDGEVIFPDRQAMLFAGDILAHKPGAVIVHDVKCTRNIRPYVESRGGVCV MSRTGHSLIKAKMKEVNADFAGEMSGHIFFHDRWPGFDDGVYASTRLLEILTRSADANAP LKALPNAVSTPELQIPTEEGENVKLVERLKENAKFDDAQDIITIDGIRVEWKDGFALARP SNTTPVVVLRFEADTPEALARIQDRFKEEILKVAPDAKLPF >gi|301349847|gb|ADCQ01000003.1| GENE 57 61318 - 62262 1015 314 aa, chain + ## HITS:1 COG:RSc0914 KEGG:ns NR:ns ## COG: RSc0914 COG2870 # Protein_GI_number: 17545633 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Ralstonia solanacearum # 9 312 13 316 319 346 62.0 3e-95 MNILKPSMEAIRNASVLVVGDAMLDRYWFGDASRISPEAPVPVVKVTRTEDRLGGAANVA RNSASLEARTSLLAIIGDDEAGTKIMDLLEASKVRPCLYRAENFTTTLKLRILARNQQML RTDFESSIAGTVLDQHSHRFTSLLPDHDVVILSDYGKGGLDRIENMIQEGRTFGRPILID PKRDDYSRYKDATVITPNRNELAQVVGKWNSEADLFNRAQNLRKELNLEKILLTRSEEGM TLFDDDGAWTVPAHAREVYDVSGAGDTVISVLGVMLSAGCDWHTAVYIANQAGGIVVGKL GTATVTPEELFNTL >gi|301349847|gb|ADCQ01000003.1| GENE 58 62278 - 63273 1324 331 aa, chain + ## HITS:1 COG:RSc0915 KEGG:ns NR:ns ## COG: RSc0915 COG0451 # Protein_GI_number: 17545634 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Ralstonia solanacearum # 1 331 1 331 331 405 61.0 1e-113 MSFIVTGAAGFIGANIVKGLNNRGCNDVIAVDNLTQADKFVNLADHHIIDYFDKVDFIEK VKARKIAKPEAIFHEGACSDTMEHNGHYMMENNYRYTLELFRWCQEEKIPFIYASSAATY GASNVFKEDIRYEKPLNVYGYSKYLFDQVLRKEMQKGLTAPVAGLRYFNVYGPHEQHKGR MASVAYHQFHQFRKDGKVKLFEGCLGYTNGAQMRDFVYVDDVVDVNFFCLDKSVSGIYNC GTGKAQQFNDVALTVVNTLREQEGKAALSLAEAVNQGFIEYIPFPEALVGKYQAYTQADL TELRKAGCEVKFKSVQEGTRLYMLELLKKFA >gi|301349847|gb|ADCQ01000003.1| GENE 59 63270 - 63851 360 193 aa, chain + ## HITS:1 COG:YPO1074 KEGG:ns NR:ns ## COG: YPO1074 COG0241 # Protein_GI_number: 16121375 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Yersinia pestis # 12 174 2 162 188 168 48.0 5e-42 MRFCFTFRPRFSSAVKAAFLDRDGVINVDYAYVHSRENFHFIPGALEGAAELVRKGHQLI IVTNQSGIGRGKYSIDQFRELTFWLAGVFARNHAPLSAVYFCPHHPTHAFAPYLKDCDCR KPNPGMLLQAARDLNIDLTQSVLIGDKTSDIQAAKAAGLSKAVLVQSDGTKPWTECAVPH LQTKDLLAAAKLL >gi|301349847|gb|ADCQ01000003.1| GENE 60 63848 - 64342 477 164 aa, chain + ## HITS:1 COG:RSc0309 KEGG:ns NR:ns ## COG: RSc0309 COG2870 # Protein_GI_number: 17545028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Ralstonia solanacearum # 6 163 7 164 166 204 62.0 5e-53 MSQHLPPPPFEKKIVSFEKLEEFVRKLPHPVVLTNGVFDILHRGHVTYLAQAASLGASLV VAVNSDESVRMLGKGPDRPINSENDRAAVLAALESTACVVIFKDKVPLEVVKKVRPDIYV KGGDYEISQLPEAEIVHSYGGKVVTVAFDYDRSTTKLLNKVRSK >gi|301349847|gb|ADCQ01000003.1| GENE 61 64335 - 65183 953 282 aa, chain - ## HITS:1 COG:NMA0848 KEGG:ns NR:ns ## COG: NMA0848 COG1210 # Protein_GI_number: 15793818 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Neisseria meningitidis Z2491 # 4 276 1 271 289 307 57.0 1e-83 MTKMKPVRKAVFPVAGLGTRFLPATKAMPKEMLPVVDKPLIQYAVEEAAAAGITDMIFIT GRHKRAIEDHFDSAPELERDLKSKNKNALLATLKAVVPPGINFIFIRQPEPLGLGHAVLC AQPVVGEEPFAVLLADDLIDAKQPAIAQLIKAREENNGGNVLAVQTVPRELTKQYGIVEV NGEHEKCPTIRSIVEKPDPQVAPSTMAVIGRYVLEPEIFDSLRKIDRGAGGEIQLTDAIA REIPKGKTVACKYDGERFDCGSKQGFLNATVHYARKEGYRII >gi|301349847|gb|ADCQ01000003.1| GENE 62 65242 - 66078 790 278 aa, chain - ## HITS:1 COG:NMA1504 KEGG:ns NR:ns ## COG: NMA1504 COG0204 # Protein_GI_number: 15794403 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Neisseria meningitidis Z2491 # 74 268 69 254 255 124 38.0 3e-28 MKTIKGIWRFSRVICYTFVCLFQAYTRFKRVDRKEKGRMLRYYPTQVLKLAGVRCSYEGN VPELLHECGLTDTPPAYMVLSNHISWLDIFSLDSQLPSRFIAKAEIAKWPVFGLIAQQIG TLFINRSSKRAILRINDDIRGALCNCEAVTIFAEGTTTFGNELLPIKANFIAPACEIGAT VQPVILSYKNKGKPTKRAAFAGDVTLFGSLWNVVTMEDAEVVVHFLEPITNTKDLTRHEV AKICEESMRAKLQEIWGDEYIANDANAAEALAKAIANG >gi|301349847|gb|ADCQ01000003.1| GENE 63 66065 - 66517 390 150 aa, chain - ## HITS:1 COG:RSc0676 KEGG:ns NR:ns ## COG: RSc0676 COG0816 # Protein_GI_number: 17545395 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Ralstonia solanacearum # 16 141 18 141 144 117 46.0 7e-27 MSQQSALERLSEDSIVIAFDYGLKRIGVAVGNLLTKSARPLRIIHWKKNDQKWAEITQVL SDWQPAAVVVGVPRHKDGKPNDMTPICERFANQVEGRYGIPVVREDERYSSVEAESYHDA DDDEPIDDEAAAIILDQWLNKVPGENNENH >gi|301349847|gb|ADCQ01000003.1| GENE 64 66683 - 67123 440 146 aa, chain + ## HITS:1 COG:no KEGG:Rmar_1659 NR:ns ## KEGG: Rmar_1659 # Name: not_defined # Def: hypothetical protein # Organism: R.marinus # Pathway: not_defined # 3 135 4 137 145 88 45.0 7e-17 MVEFSATLSDALAPVTLISGVGLLLVSMSARYCHATSRIRQLLAERKEESEDFHEEIDQS IDLIYKRASLLKTGILTLMISAAFSSLQVLVIVIERLFSLDLSLMKSTMLLASVIFIVIS SCIYVSEVQVSVKALGLTVHHHNRPQ >gi|301349847|gb|ADCQ01000003.1| GENE 65 67134 - 67571 381 145 aa, chain + ## HITS:1 COG:no KEGG:Rmar_1659 NR:ns ## KEGG: Rmar_1659 # Name: not_defined # Def: hypothetical protein # Organism: R.marinus # Pathway: not_defined # 8 136 9 138 145 85 43.0 5e-16 MISYAVTLSDALTPITLISGVGLLLLAMTARYNYTTDRVRALLKERRQKAPAVDPVLEKA IRLTYERSHLLKNAILAVTTSAAFSGILVLVTILEHLSGLNLEVWKSTMLLTAVVFIVVS TIFFVLEIQISLKTIHTSIRIARGS >gi|301349847|gb|ADCQ01000003.1| GENE 66 67639 - 68229 925 196 aa, chain + ## HITS:1 COG:mll8244 KEGG:ns NR:ns ## COG: mll8244 COG3247 # Protein_GI_number: 13476811 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 19 186 16 183 184 78 28.0 6e-15 MTQNNANNRVVNELLKPLKKRSGAMIGWGIFCIVLGTIGLFAPIAFSVGVTIFIGAMLLV SGATGLALFWKAEGWGARTAAIILALLTALTGLLLMFYPIAGTETLTLFLASYFIAIGLV KCWAALSNTDAKGWGLMLFSAIVSLLLGGCLWWGWPQSATWIFGIFVAIELIFDGWTALM FGLEVRALPDDDNDNK >gi|301349847|gb|ADCQ01000003.1| GENE 67 68342 - 69481 1315 379 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860951|gb|EFL84026.1| ## NR: gi|302860951|gb|EFL84026.1| hypothetical protein HMPREF0189_01389 [Burkholderiales bacterium 1_1_47] # 1 379 1 379 379 744 100.0 0 MTDKTEKQASPGPFDDKNLGELFQIALVNAPSPSKNAFNWGAFKPEAVKSPADLPPYLVF GPLNEGTFLLTPEGWRAEWSDAQQKAKITLNWGANTHRYTATQVWEGEEGSATEQPDTTP LIQVFAMLYENGLPSMWDQLAKKKAEEMYHLTWLVGDKRLPTYFAAPDGIFRVISFPVMI KNLRHAQSILKSIAEKSPSYGFYAIANLMEQDVYYEIGKAPDWTSDIALCMTQSIGETGL IPSGVPSSETIEGKEYIHLERDVMMLNISVPFAHIFEMLKDLSETPMPILPAYEAPMRRE TLPVILPQGLSERLNSFTLDDTIQGIRVQYSYPVQEASLDDLLKLDSADQIDRLEKFSDH MLDQLTADVQKESEKDLKE >gi|301349847|gb|ADCQ01000003.1| GENE 68 69624 - 73565 4252 1313 aa, chain - ## HITS:1 COG:RSc1722_1 KEGG:ns NR:ns ## COG: RSc1722_1 COG0046 # Protein_GI_number: 17546441 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Ralstonia solanacearum # 14 993 12 1045 1046 1059 54.0 0 MSNTTQLRLDASRALSDFRTERLLKKIQKICPEVVTLNSRYIHFVNVDGALSSEEFHTLV SILDYGEEAIVTASTERFMVIPRLGTISPWASKATDIVHNCGLRKVLRVERGTCYELILK GNAVLKPEEREAVAAVLHDRMTESVVSPDVNPAIVFADAKGKSMQSIDIIGKGREALEKA NIELGLALNEDEIQYLIDAFTKLNRNPTDVELMMFAQANSEHCRHKIFNASWTIDGEKKD KSLFSMIRETHKAHPEGTIVAYSDNAAIFEGGDTARMYPRGNEDAVGGRSYSTVVEPTHS VFKVETHNHPTAISPFPGASTGSGGEIRDEGATGRGARPKAGLTGFTVSALRIPGHEQGW ENDRDVSKASEAAPYYGAPSRMASPLEIMIEGPLGGAAFNNEFGRPNILGYFRSFEANVD GTRYGYHKPIMLAGGLGNIRNDQTHKLGLPTGTLLVVLGGPGMRIGIGGGAASSMGAGAN SESLDFASVQRGNPEMERRAQEVIDRCWEAGEENPILAIHDIGAGGLSNAMPELADLSGK GAKLDLNKVPVEESGMSPLEIWCNESQERYSLAIDPARLEQFDQYCKRERCPYAVLGEIS ADDELVVTRGPGEEPAVDMPMSVLLGKTPKMHRDAEHAEPVKMETDKAVDTRKALYEVLA HPTVGSKKFLITIGDRTVGGMTVRDQMVGPWQVPVADAAVTAVSFEEFKGEAMAMGEKTP IAVSNAAAASRMAIGEALTNLVSADVNLDRIILSANWMGACGAKGQDAALYDGVSAASCF CQELGVSIPVGKDSLSMKTSWKDQAGEAKTVVSPVSLVVSAAAPVYDIRNNLLPMFAETV RDSSLLLIDLGHGKDRLGGSVYSQVTQRFDSVTPDMEDPKELKKFLELIRSLSAKGAILA YHDRSDGGLAAALCEMMFASHVGVEIVADALVSKDRTLNQALFNEELGAVIQVARGRAAE VERDFEAAGMGWSLKYLGNLTQDDHLNIYLEGKCVLSEDRVDLQKAWNEVSWQIARMRDN PECADSEYALISDKHNGGLVLTMGFDPEENLAAPFINTGVRPKVAILREQGVNSQNEMAS AFLQAGFDAVDVHMTDLLEGRAKLADFVGLAACGGFSYGDVLGAGGGWAKTILHNAKLQS SFRRFFETPTTFTLGVCNGCQMISQLKDLIPGAEHWPAFVRNLSEQFEARLVNVKILESP SIFFTDMTGATLPIVNSHGEGRAYWANPLDEAEAICAACYVDSKQTPTEIYPLNPNGSHG GKTAFTTADGRATIMMPHPERSWRATQMSWRSPLLKNVTPWARIFQNARFWVG >gi|301349847|gb|ADCQ01000003.1| GENE 69 73783 - 75072 1191 429 aa, chain - ## HITS:1 COG:RSc0486 KEGG:ns NR:ns ## COG: RSc0486 COG2379 # Protein_GI_number: 17545205 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glycerate kinase # Organism: Ralstonia solanacearum # 11 428 11 431 432 310 49.0 5e-84 MTKEKDRFEELLVESFYVAIDAADPHKVVPPHIPSTFQGDVVVVGAGKAAASMAAAVEQA WPEKDLTGVVITRHGHSEETHKIQVLEASHPIPDKSNLEATQKMMDQLDHLKEGSLLLAL ISGGGSSLLSLPVEGVTIEDIRKVTEDLLKSGTSIDHINAVRKHVSQVKGGQLALAARAK GAEVLSLIISDTVGDNPSDIASGPCAEDFSTYADALWYLSQAHVEAPPSILNHLRNGARG IIPETPKIGDPRMRGVKNKIIANSFKGLQVAAAFFKEKGMRPVIIGDGITGEAKAVAQQV ARKVRLELSKPRRKPVVLLSGGECTVTLTGRRIGKGGPCSEFLLALAQELKGEPIYAMAT DTDGVDGNGEAAGAILRPDSMARAEELGLDPQQYLEEHNAEEFFGKLGDLLDTGPTRTNI NDYRVILIP >gi|301349847|gb|ADCQ01000003.1| GENE 70 75095 - 77947 1592 950 aa, chain - ## HITS:1 COG:RSc0420 KEGG:ns NR:ns ## COG: RSc0420 COG0178 # Protein_GI_number: 17545139 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Ralstonia solanacearum # 15 949 1 948 954 1150 59.0 0 MKNLANMLTQKEKPMSEIRIRGARTHNLKNIDIDIPKDRLVVLTGVSGSGKSSLAFDTLY AEGQRRYVESLSSYARQFLELMEKPDVDLIEGLSPAISIEQKGASHNPRSTVGTITEIND YLRLLFARIGVPYCPNHDIPLKALPVSEIADKILLKYQGKRTLLIAPVSKGRNSNVASLL EDLQARGYTRFRIDGEIVTIDELPKLEEGAHTLDIVVDRLRVKEDSRQRIAEGAEAALRL SDGKVIAFDMDDNEEEVFSDRYACPYCGYSVPKLEPKLFSFNSPTGSCPTCNGMGEVDGW DINKVVEFPELSLRSGAVQGWSCTQPYNFTLLQDLSKAKHISLDEPWEKLSPEAQEMVLY GSKDKISLTFCSPKGEKITREQPFEGIIPMSNRRFETTESSAVKADLEKWRSLQTCPACR GARLNEAARSTYIGSGEHKKAIQDISALPLDKAETYFRTLKLEGASLDIGKKLIDEILFR LKFLIDVGLSYLTLDRRADTLSGGEAQRIRLAGQIGSRLSGVIYVLDEPSIGLHQSDNDK LIHTLKTLRDLGNSVVVVEHDEDTIRAADYVVDMGPAAGVHGGEVIAAGTPKEIEADPNS LTGAYLSGRLKVRQNTERKKPDGGFLEVKGASGHNLKNVDVSVPVGLMTVVTGVSGSGKS TLVNQTIYNIAAHALNRAQTQPCPYKSVSGLQFFDKVIAVDQSPIGRTPRSNPATYTGVL AGIRDLFAETPIARERGYGSGRFSFNVKGGRCEACEGEGLVKVEMNFLPDMYVPCDVCGG TRYNRETLEVEYKGRNIAEVLDLTVDEALEVFSAVPAVARKLRTLADVGLGYIKLGQSAT TLSGGEAQRVKLAHELSKRGTGKTLYVLDEPTTGLHFHDVSMLLSVFKKLQDAGNTLLII EHNLDVIRAADWIIDMGPGGGEDGGTILFEGTPEELIEIPASKTARYLGN >gi|301349847|gb|ADCQ01000003.1| GENE 71 78221 - 78706 390 161 aa, chain + ## HITS:1 COG:RSc0422 KEGG:ns NR:ns ## COG: RSc0422 COG0629 # Protein_GI_number: 17545141 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Ralstonia solanacearum # 1 110 1 110 178 117 52.0 1e-26 MASVNKVILLGTLGRDPEVRFSANQLPIASLSLATSSFRRSAESQDRIEETEWHRVTLFG RQAEIAQQYLRKGSRAYIEGRLRTRKYEKDGQTHYVTEIVAEQLQLIDRRQDSPADGNFS DGNSGYAPSRSASRSSGYSSGNQYASQPKTQNAFDDEEPPF >gi|301349847|gb|ADCQ01000003.1| GENE 72 78810 - 79337 590 175 aa, chain + ## HITS:1 COG:PM1950 KEGG:ns NR:ns ## COG: PM1950 COG0629 # Protein_GI_number: 15603815 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Pasteurella multocida # 1 175 1 166 166 134 45.0 9e-32 MASVNKVIILGNLGRDPETRFSGNNLQITSMSVATTSYRRSAETQERVEETEWHRVVLFG RQAEIAQQYLKKGSRVYLEGRLRTRKWEKDGQTHYSTEILADTLQLIDRKSDVVGGGQSY APQSSGDGFESPAAPRRSEFTSGAPAARPAAPAQPAAPVPSAAPTDDFEADEIPF >gi|301349847|gb|ADCQ01000003.1| GENE 73 79395 - 80600 415 401 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 8 401 11 413 413 164 28 2e-39 MLGNALLLALRQIFRNPMRSILTVLGIVIGVAAVITMVTVGNGATQQVRDQIASLGSDSL MIRPGQRLGPGQSVGAPSFKESDAEALATQIAGIKAVAPSRTSTQVVVANGKNWSTSVIG TTNDYFSINNLTIQEGRNFEQSELRAGSAVCVIGQTVKKELFENHDALGKLLRVKGFSCQ IIGELEQKGQSGMGMDKDDVVIIPLNTFQRRISGNVRIPLITVAVEPGSDIERVKESSRL LLRERRSLSSSEMDNFNILDTSELIETISKTTQVLTMLLGAVAAVSLLVGGIGIMNIMLV SVTERTKEIGVRLAIGATEREVLLQFLVESIMLACFGGLLGVILAFGASVLLTHFMGVPF IFSPGINVLAFCFAAFIGIIFGYFPARRAAQLDPIEAVRHE >gi|301349847|gb|ADCQ01000003.1| GENE 74 80594 - 81301 279 235 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 233 1 225 309 112 31 1e-23 MSSGEKPLVQLIGIGKRYGTGPTAFDALHHVDLSINAGEFVAIMGPSGSGKSTTMNIIGA LDTPTRGQYLFNGFHVEHFTRDQRALLRRQYLGFVFQGFNLLPRTSAIENVELPLLYRGE PAKVRHEMALEALDKVGLTQWKDHTPAELSGGQQQRVAIARAIVTHPKLLLADEPTGSLD SHRSVEIMKLLQKLNDEEGITVVLVTHEPDMAKYAKRIVHFVDGTVASDQENKPC >gi|301349847|gb|ADCQ01000003.1| GENE 75 81301 - 82602 1224 433 aa, chain - ## HITS:1 COG:AGc3332 KEGG:ns NR:ns ## COG: AGc3332 COG0845 # Protein_GI_number: 15889118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 48 427 57 430 437 270 45.0 4e-72 MTDKTNTTKAQKTDIEGLLGADKVKPLYERGSFWLVLLILLGILFAVYYFFFRGSQGQVG FVTQPLTKGNLTVEVSANGTINPIRTVSLGSELSGIVRKVNVDVNDQVKKGEVLIELDDT KLKASVERAKASLDLSKATLAESLATLKEAKAKLSRLQEVRRLSGGKSPSKTEIDAQEAL VAKAQASVQSAQAKITDSEQALKSAESDLSKTHISSPIDGVVLARSVEPGYAVAASLQAV ELLKLATDLKDLELQVNVDEADVGAVKPGQKASFTVSAYPDRNFPAELKKVAFGSTKTDN VVTYVTYLDVKNPDLLLRPGMTATATIRTVALKDALLVPNTALRFRPTVSSESKAPAMNV FGPPMRRSVRKSAGSVTSPNASQKKAEVYVEEDGHAVPVPLVVGFTDGKMTQVLEGKLSA GDKVIVDQRRGAK >gi|301349847|gb|ADCQ01000003.1| GENE 76 82592 - 83995 1245 467 aa, chain - ## HITS:1 COG:PA2837 KEGG:ns NR:ns ## COG: PA2837 COG1538 # Protein_GI_number: 15598033 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Pseudomonas aeruginosa # 7 457 8 471 479 196 30.0 7e-50 MRNSTGLILSLLFGALSGCVSIPQFQITEQDKKVIPDQWSGSPALKATKAADLSEWWSTW SDPEIARLVAASQAANTDVRSAQENLRYAQASMTVANAGLFPTLDGNYRASRSHSLGHGS NAFSIGLNVSWTIDAGGRFAASEAAFSDYLSSQASLGDVQTRIAAEVARAYVNMRLAQKR LDVAQENAKTQQEALDIANWRYLSGLVPSTDVDQARTSFEQTRASIPVYRAQVMQYRNLI ARLIGTTPEAVNPTSTAPIPQPPRNLALNIPGETLRNRPAVRMAEAKVMSALARYAQAKS ALFPSLSIGGSFGLSGSIMGQLGEWGTHNSNGFGSLTLPIFNAGSLMAQVEQRDAQAAQA KIDYEASLLTGVQDVEDALNKVWSQETRKKSLVVADESARNAATAARQNYSAGLQDFTVV LTTQRTLLTVQESLASVEAEIAQGYIDLYTALGGGWTVPQEFKNNDR >gi|301349847|gb|ADCQ01000003.1| GENE 77 84133 - 85029 850 298 aa, chain - ## HITS:1 COG:AGl1926 KEGG:ns NR:ns ## COG: AGl1926 COG0483 # Protein_GI_number: 15891078 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 44 275 49 272 297 144 37.0 1e-34 MTDFCREATLTKMGESGEMSEKKQSYCAGCSEAELKLFEPAIKKLISLANEEILPRFLAG TEVFDKKDHTPVTAADRGAEKVMREWIEAHFPTHGIFGEEFGIKEASGDSFPRYRWILDP IDGTRAFIHNAFHFGTLIAVERDDGNGFQPMLGVISHPHVGVWLIGDGERAILHGPDSKV RQVHCKETKNLADATLVVTSHWTTPEQKGGKEMQSLIDEVKLYRTWGDCFGYFSVATGGA DIMIDPDLNYWDVAALVPVIEGSGARLVSMKGGNPLKDLSAVATNEYLLPEVLRKLAN >gi|301349847|gb|ADCQ01000003.1| GENE 78 85116 - 87167 2415 683 aa, chain + ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 1 665 3 675 690 407 34.0 1e-113 MPIFSTENLRTVALVGHGGSGKTTLAEGILAKAGMIITCGSVERGTTVCDSDPLEKAVQH SLRAACTHFEADNENGQEVRVHMIDTPGYPDFVGQALGALDAVKTAAIVVDATAGIQLMT RRMMDWAKERNLNRMIIVNKIDAEHLDLPRLVEELREAFGQEVMPINLPANNGARVIDCF SKDEGEADFMSVPEVHRAFIEQVVEVDDAAMEKYLEEGEADPSTLHAPLTQALREGHIIP ICFVSGKTGAGVDDLINVMVRHLPNPSEANAPLFTDENGNDVELKSDPELPLVAHVFKVV NDPYVGKVGVFRIHQGTLRRDDQLFVNDNKKPIKVSHPMILQGKETTEVRELVPGDIGVI AKVDELVFDSVIHASHEHDNIKMKPLSFPKPMFGLAISPARRGDEGRLSDILHKLLSEDP TLELEHDTTLNETVLRGLSAQHLRSVLERMAAQFKLEVNTRTPRIPYRETIAQGAEGHAR HKKQTGGAGQFGEVYLRIEPRERGAGFEFVDEVKGGAIPYNFIPAVEKGVRDALDTGYVA GYPIHDVRVVVYDGKSHPVDSKEVAFVSAGRKAMLDALSKAKPTILEPIVDVEIVAPDSA MGDITGDLASRRGQVTGTANMAGGMMIISGTVPLSELDGYAARLNAITQGAGSYSMELAG YAPVPMQRQVELASNYHRKDEDE >gi|301349847|gb|ADCQ01000003.1| GENE 79 87380 - 87625 290 81 aa, chain + ## HITS:1 COG:RSc0464 KEGG:ns NR:ns ## COG: RSc0464 COG2331 # Protein_GI_number: 17545183 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 69 1 69 112 87 60.0 8e-18 MPIYSYKCSNCGYTKDVLQKYSDAPITHCPKCNMKTMVKQLSAPGFELKGKGWYATDFKG GSSAALPASHCNENCPAKKDK >gi|301349847|gb|ADCQ01000003.1| GENE 80 87724 - 89541 2514 605 aa, chain + ## HITS:1 COG:RSc0466 KEGG:ns NR:ns ## COG: RSc0466 COG0173 # Protein_GI_number: 17545185 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Ralstonia solanacearum # 9 599 1 591 605 915 73.0 0 MLAFAEFLMRTEYAGLIDEKFLGQTVTLYGWAHRRRDHGGVIFIDLRDREGLVQIVCDPD RPDVFETADKVRNEFVVEVKGLVRARPEGTRNENLISGGVEVLAQELKILNPSAPPPFLL DDENLSETTRLTYRVLDLRRLPMQRNMKLRYKAAMAFRRFLDKHGFIDIETPMLTKSTPE GARDYLVPSRIHDGHFYALPQSPQLFKQMLMCAGFDRYYQIVKCFRDEDLRADRQPEFTQ VDIETSFLNEVEIRALMEELIRAVFKEAINVDLPNPFPIMLWTDAMNNYGSDKPDLRVKL KLTDLTDLMSNVDFKVFRSATELNDGRVMALRVPHGASMPRSEIDGYTEFVKIYGAKGLA YIKVNDIKAGREGLQSPIVKNLSDDVLKAIIERTGAQDGDVIFFGADRKKIVFDSLGALR LKVGHSEFGKSHGLFEEGWRPLWVIDFPMFEYDEEEERWVACHHPFTSPKDGDEDKLVTD PENCFAKAYDMVLNGWEIGGGSIRIHKADVQSKVFNALKIGPEEARAKFGFLLDVLQYGA PPHGGLAFGLDRIVTMMCGADSIRDVIAFPKTQRAQCLLTQAPSPVDEKQLRELHIRLRN EHKKE >gi|301349847|gb|ADCQ01000003.1| GENE 81 89614 - 90807 1113 397 aa, chain - ## HITS:1 COG:STM1522 KEGG:ns NR:ns ## COG: STM1522 COG2814 # Protein_GI_number: 16764867 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 13 385 11 377 396 259 43.0 4e-69 MHTPQQHKFGFKAWIPTIGLAFAAFVFNTSEFLPVGLLPNIAESIHESVSKTGLIITVYA WVVSLLSLPLTILTAKLERRRLLLWLIVIFALSHFVVLWADTFEKLMGARVCVAVTHSIF WSIMTPLAARVAPFGKQAFGLAAVMGGSIVATVLGVPIGTHLGQQVGWQGSFFIVGMAAV LVWVIIFFSLPVCTSNRAGSLKSLPSLFKRPALVQLYLLTMVVILGQFTVYSYITPILMN VGHLSENATVWFLFIFGIAGIIGTVISSRTVDKHRSGTLVIPMLIMTVCVGLLTVTSSHF GALVILGTFWGASMTAISMAFQTLLLDTARDAADVATSMFSGIFNIGIGGGAFIGSRVSA EFGFATVPYVACALIGVCVLACAAIWLKRGSAILPTR >gi|301349847|gb|ADCQ01000003.1| GENE 82 90822 - 91451 696 209 aa, chain - ## HITS:1 COG:no KEGG:Bphy_6448 NR:ns ## KEGG: Bphy_6448 # Name: not_defined # Def: putative lipoprotein # Organism: B.phymatum # Pathway: not_defined # 42 207 2 165 168 72 26.0 9e-12 MLSTTLFLWDAQRPLSERPTWTLFATCIPNTLSRKLGLEKKMTKFYKLILVCCAALFLTA CAHPDMIKLNDTYDHTVKELGVPDSTTRLPDGSIRIVYSMQPMGQTSYVMIFNPEGRLIF KDQLLQQKYFNQIKPKVQDSQDIYTMFGKPCEQWHYKNLGEHTYMYRYLDESGFPMALWV DFDDKDDKVLRYVLSIDPWVQRDADQRDF >gi|301349847|gb|ADCQ01000003.1| GENE 83 91559 - 92251 735 230 aa, chain - ## HITS:1 COG:SMb20490 KEGG:ns NR:ns ## COG: SMb20490 COG0235 # Protein_GI_number: 16264220 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Sinorhizobium meliloti # 10 222 12 216 232 186 45.0 2e-47 MFEDKEEKGREEIIDYALKLSRAGLNVNSSGNLSVRFDSPEGKGFLITPTGLPYDETEPE DLVRILFTDNGCYKAVGSRQPSSEWNLHAFLYQARPDINAVVHTHSPYATMLSCLDEAIP PFHYMVAAVGGDTLPCAPYATFGSVALAEGCRDTLGKDRLGCLLSHHGSVAAGRNLKQAY AVALEIESLARMWMNLKQIGGCPLIDKEEMARVKEQFKTYGQQEKGHEEG >gi|301349847|gb|ADCQ01000003.1| GENE 84 92244 - 93323 754 359 aa, chain - ## HITS:1 COG:SMb20624 KEGG:ns NR:ns ## COG: SMb20624 COG0182 # Protein_GI_number: 16265284 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family # Organism: Sinorhizobium meliloti # 9 344 9 348 364 320 52.0 3e-87 MSVEFNSPYTVFIDEAERRVTVLDQRLLPHRVEYVDLKNAQEAAEAIRDMTVRGAPLIGV TGAAGMALAADESTETGFLIEAANLLKSARPTAVNLNWAVDFMLKRLKGMEPDRRRKAAW HLAAEICEQERTMSIRLAKHAQTIIEALYLKLGRPLNILTHCNAGKLATVELGTATAGIY TAFEAGIPLTVYADETRPRLQGTLTAWELKAAGIPVCLIADNAGGELMREGGIDLVIVGA DRIAANGDTANKIGTYLKALAAADNQIPFYVAAPISTFDWTAKSGGDIPIENRSGDEIRW VRGVDKHGQEAEVCITDPGIATVNPGFDVTPARLITGFITDRGVFALEDLKDLRMNSHV >gi|301349847|gb|ADCQ01000003.1| GENE 85 93481 - 96162 2045 893 aa, chain + ## HITS:1 COG:all0769_1 KEGG:ns NR:ns ## COG: all0769_1 COG1042 # Protein_GI_number: 17228264 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Nostoc sp. PCC 7120 # 7 710 24 735 743 284 29.0 7e-76 MDFNHYLHSLFNPRSVAIIGASARSGSFGTLIWKIAKSASPRARLFPVNPKYKTIGRETS YAALTDIKEDVDLAVLVCPPSVYPKALENCLKKGVKNILLCGGFPKSDLTEPVLEAINKT TAAGVRIVGPQSLGLMTPSEGLNLSYLPSLPPAGEVGLVSQSPGLSCTIIDYVTNAQCGF SHVIDPGFEQVLTVADYVDMLAFDRKTRCIVLYLESFQQPRKLLSAIRLAAANKPVILLK GGQTPGSADIVINNSGAREDEDGVMKRALVRAGALLVTSLKELNYAVQAFAMRKDLASGE LYGLVNSKGLDSLLADHAYNNDLRLATPDSTVAKELRDKYKITFPYANPVNMGLDMDAAT IVDLTDYLLNRPECSGIVLSVVTNPSFDPLELAKKLVPILKKSSKPAVTVWIGTESDFPA IKYLRKNGIVAMNDMKGACRAIRLMEQFRKFKSDGVPGSYSVIPSDPAFFASARKIIQTA RREGRHLLYEEESKRLLAGIGFETTAGIYAGSLGEAIEAARALGYPVAMKLRMNGVLSKS DAKGVILGIRNERELKGSWKNMSERAVHLGQPEEGLGVFLQKTLDSDNRRELRIGMKLTR HFGPIVYLGIGGLYGKIFKGTAFNFAPLSLKEARDMISSEPFKTFLGDFQGLPPCDPEPI VTALIRLSQLAVEVPAVRSIDIDPLLCGKGHAIVLDAHCVIGSDTLTADENASHLIFPYR PSFEKNVRGKYGLAKIKYSAPEDKENFLKYLGSLSDQSRRLRFHSLTSSLESIAVSAVSS DPDRSFSIFAVDPNSDSGDIIAEARLSQLPNRTSAEFGISVRDDWHGRGLATLLMDEIEA EARRRGLEKVVGYVLKDNENMHGMMAKRGYVRTTDKDDPNIDLFTLDNVKVSN >gi|301349847|gb|ADCQ01000003.1| GENE 86 96226 - 96981 748 251 aa, chain + ## HITS:1 COG:RSc0476 KEGG:ns NR:ns ## COG: RSc0476 COG1024 # Protein_GI_number: 17545195 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Ralstonia solanacearum # 1 250 1 251 254 156 38.0 3e-38 MPIVTTIEGKIAQIAIDRPEKRNTLNSELCKDLAREFLELNDDTRVRSIVLCGHNNVFCA GLDIEEQLAENTQIFSEFQKVIDALDALSKPIVAAVSGPAVGQGAAMLYHCDLVFAGEHA LFSMPGLALGQTPRYGVSLLAVKSGGYKLAAQKLLLSEPISAAEAVAMGLVNHVVEDDKV MTVAGAAALRLACLPPEAMVATKRLLKAAYMSGLSEQRKLEEEAASHLEGSAESKEAFSA FMEKRQPKFAE >gi|301349847|gb|ADCQ01000003.1| GENE 87 96986 - 97411 539 141 aa, chain - ## HITS:1 COG:RSc0477 KEGG:ns NR:ns ## COG: RSc0477 COG1607 # Protein_GI_number: 17545196 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Ralstonia solanacearum # 11 127 17 134 139 130 61.0 7e-31 MKNLVEKLPDQQPALRVMAMPPDTNQYGDVFGGWIMSQVDLAGSSIASRVANSRTATVAV TSFTFKEPVWVGDVVSFYATVLKVGTTSITVDVTVFAERLHKDNHRIVKVTEAQLVFVAL NKDGRPQPVYRADNPAPEKTE >gi|301349847|gb|ADCQ01000003.1| GENE 88 97607 - 98395 549 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 21 259 1 242 245 216 45 7e-55 MQNILLLGSCEGAGAEDIEQMIRIENVSKWYGDFQVLKNCSTSVKKGEVVVICGPSGSGK STLIKTVNGLEDYQEGTIYVNNINIGDPHTNLPKLRAHVGMVFQHFELFPHLTIRDNLTL AQMKVLKRSRDQANKRGMELLDRVGLIKQADKFPPQLSGGQQQRVAIARALAMDPICMLF DEPTSALDPEMINEVLDVMINLAKDGMTMMVVTHEMGFARKVADRVVFMDAGEIVEEAPK EEFFSTPRSERAQRFLAKILQH >gi|301349847|gb|ADCQ01000003.1| GENE 89 98576 - 99559 1027 327 aa, chain + ## HITS:1 COG:RSc0413_1 KEGG:ns NR:ns ## COG: RSc0413_1 COG0794 # Protein_GI_number: 17545132 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Ralstonia solanacearum # 11 209 17 215 216 239 62.0 8e-63 MKPEISEKGILNLGRHVLLEEAKELEAIAGRLDETFVKAVTLILNCKGRVVVSGVGKSGH IARKIAATLASTGSPAFFVHAAEAAHGDLGMITKDDVVIAISYSGTTSELLTIIPTVIRE GAPVISITGSDDNTLAKEATVNLNVHVSREACPLNLAPTSSTTATLAMGDALAVACLDAK GFGPEDFARSHPGGALGRRLLTHVRDVMRSGEATPVVRIDATVLDAVKEITKKKIGMTAI VDETDKVKGIFTEGDLRRLIERVGDIRPLKIRDVMTPNPTTIQPQALAAEAAKILNSTLR NQLLVVDDSDRLIGALHIHDLMTAKVI >gi|301349847|gb|ADCQ01000003.1| GENE 90 99559 - 100089 634 176 aa, chain + ## HITS:1 COG:VC2524 KEGG:ns NR:ns ## COG: VC2524 COG1778 # Protein_GI_number: 15642520 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Vibrio cholerae # 6 165 19 178 185 146 45.0 2e-35 MKAETIAKKIKLVCLDVDGVLTDGSIIISGQGELFKQFYVRDGLGIKFLQDCGIQVAICT GRQSDIVIERAKELGITLLMQGQKDKREGLAEICRQAGVSPEETAYMGDDIPDLCLFPLV ALSCAPSDASVVALKKACWVSRFPGGHGAVRELAEFILKSQGRFEEAVMKRFNTEL >gi|301349847|gb|ADCQ01000003.1| GENE 91 100093 - 100686 665 197 aa, chain + ## HITS:1 COG:RSc0411 KEGG:ns NR:ns ## COG: RSc0411 COG3117 # Protein_GI_number: 17545130 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 9 187 21 209 210 67 24.0 2e-11 MRDRLTSLIAIALLVTLCAMSYWYSVKAELENVTHLSDLNSPDFIARDITITQFDDDGIA KAKVFAKEVEHYSDGHANAKFPEYASLNPNEAQITAKSDRATMVDGGAVIHFYNNVDIRQ AATKDAPASRLLTSQLDAYPDTDTYKSDKPVALTRGEDTSHGIGMDYDNVDRTFKLRSRV QTVIQPKTVKEVERKQP >gi|301349847|gb|ADCQ01000003.1| GENE 92 100821 - 101414 573 197 aa, chain + ## HITS:1 COG:RSc0410 KEGG:ns NR:ns ## COG: RSc0410 COG1934 # Protein_GI_number: 17545129 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 23 186 29 191 191 91 33.0 9e-19 MKLLPIWFFCALGLLSFGTAHAETADSEQPIQIFSDKFDGDDVKQVAIYTGDVAVHQGTL EIHGNKLVLTVDPQGYRHAVMTPLKGKLVTFKQRRDQKTPGVEEWMHGKGDELTYDEKRN VLILTHRAEVARSENGVLKDESKGDKITYNLTNSTAIIDGNKAKGPSGRVSTVIAPRDSN MDAGKPLELQGSRRVSP >gi|301349847|gb|ADCQ01000003.1| GENE 93 101411 - 102184 185 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 14 212 1 191 205 75 27 1e-12 MTDGVNLQKHQTNVLEVKNLKKIYGPRTVVKDVSLSIKSGEVVGLLGPNGAGKTTTFYMI VGLVAANGGQILLNGESIQHLPIYKRARIGITYLPQENSVFRTLTVEENIQAILELQTNE DGSPFTKKQIKEELEKLLNELQITGIRKNLAPTVSGGERRRTEIARALAARPRFILLDEP FAGVDPIAVIEIQRIVHFLKERGIGVLITDHNVRETLGICDHAYIISNGSVLAQGKPEAI VENPQVRNAYLGDNFTM >gi|301349847|gb|ADCQ01000003.1| GENE 94 102195 - 103553 1028 452 aa, chain + ## HITS:1 COG:PA4462 KEGG:ns NR:ns ## COG: PA4462 COG1508 # Protein_GI_number: 15599658 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Pseudomonas aeruginosa # 1 451 1 496 497 287 37.0 4e-77 MAASLNLVPSQHLTLTPKMRQTLQVLQLSTLELSQKINDALEDNPLLEICESSEEVSEGN TSEGDQELYWNAEGDDPEEWETPAEKTLSSHLLEQAGCLPLSEKDSGLLRWLIGCLDNDG FLPESLEEISQSAPFPKDETELEDWHVALSLLQSFDPPGIGAKDANDSLLLQLKHLLNRK LVGTELAKLTEATLRDHLTLVAKHRYDELKNKLGCSTEEIKSVLEVISRLTPRPAAEFSA DKINFIIPEIAVTKVQGRWTVRLISRLGSKIRLNDTYAQAVVQSKDKETMQLWKGRLTEA RELLHSIEQREKTLLKVARAILAHQEAFFDKGPSALRPLVLRQIADETELHESTVSRACS GKYLICPLGVFELKYFFSSSVGPSDSGEAASAASVKAALKRLVDQEPKAKPLSDAKLASA LEQQGFAVARRTVAKYRESLGIAPASERKNLD >gi|301349847|gb|ADCQ01000003.1| GENE 95 103602 - 104078 344 158 aa, chain + ## HITS:1 COG:RSc0406 KEGG:ns NR:ns ## COG: RSc0406 COG1762 # Protein_GI_number: 17545125 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Ralstonia solanacearum # 1 149 1 149 151 110 39.0 7e-25 MNGLCSLLKPDNVLLGISPSSKKRIFEQASQTLSLIYGLDRKEIFDGLFARERLGSTYLD HGIALPHCRLPNIKEPCCLFVKLHGELESDRPGEPAVSAFFFLIAPEEAASEHLALLASA AEVFSDDTLREKLLAASSADTFCGTLRSWCSVQPSDKA >gi|301349847|gb|ADCQ01000003.1| GENE 96 104098 - 105036 823 312 aa, chain + ## HITS:1 COG:RSc0405 KEGG:ns NR:ns ## COG: RSc0405 COG1493 # Protein_GI_number: 17545124 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Ralstonia solanacearum # 3 309 7 313 324 263 45.0 3e-70 MATYQQLFNLCKKKFNISWLYGQSHANEKLFLTEKAKQYPTLCVGFLNIIHPDRLHIIGP AEIEFFNQISHDARIGFLQKLVDNKSLGLVVCLDLALPDDMIQPLIDTNLPVFGTSEPPE KVLTFVRHNIVKLLAPSCSMHGVFMDVFGMGILLSGQSGIGKSELGLELVTRGHGLVADD VVDFIQRAPDWVEGSAPALLANLLEVRGIGLLDIKTIFGETSVRRKMRLNLVAELKQFDQ GELMERLPETELFTEVLGQPIRKMIIPVGGGRNLAVLVEAAVRSAILQLRGINTIQEFFD RQRKLMEQEDGF >gi|301349847|gb|ADCQ01000003.1| GENE 97 105050 - 105919 691 289 aa, chain + ## HITS:1 COG:RSc0403 KEGG:ns NR:ns ## COG: RSc0403 COG1660 # Protein_GI_number: 17545122 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Ralstonia solanacearum # 1 282 1 292 296 303 53.0 3e-82 MQLIVVTGLSGSGKSIALRQLEDLGYYCIDNLPGNYLVPVAEHLHSVGRDLLAVSLDSRS DASIPEISKSFKTLKEHNVDIRVLCLTASTDALVQRYSETRRQHPLSQRSASGPETLVEA IEKERKMLEPFVGFSHIIDTTGMLPNTLNHWIRNFVRAKKGRILLTFESFGFKRGLPMAS DLVFDVRCLPNPYWEEDLRKYTGKDQPVIDYLRSKPEVQEMISDIQNFVEKWLPSYEAQN RHYLTVSIGCTGGQHRSVYIAETLARHFSKLYEGVIVRHRTLDAVASKD >gi|301349847|gb|ADCQ01000003.1| GENE 98 105916 - 106902 612 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 1 304 7 325 378 240 41 3e-62 MDSNFAERLIAWQKEYGRNNLPWQQSHDPYVRWLAEIMLQQTQVKTVIPYFNRFMERFST VQALAEAPEEEVMKLWAGLGYYSRARNLHKCAKEVQQRFGGCFPIELVDLESLPGIGVST AAAIRSAATDEPCAILDGNVKRVLARHSMIGKGLTPSEAEKRLWADARAKTPQREGRTYA QAVMDLGATVCTRTKPLCFLCPVNQDCKAFLADCQLEYPIKKVRARVPEEILNLAVYTDG KEVYLVRKTERYWKGLWTLPELCEEDAEKPEAVLPVVEHRLTHLLLKIYPVRLPMPEEVP AEWRVFTKEQIEREALPTPIRKLLLEIL >gi|301349847|gb|ADCQ01000003.1| GENE 99 107041 - 108330 760 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 20 429 8 426 447 297 37 2e-79 MTQNYFPRWKVKTEGTIAPDETLPLGQTLAMGIQHVVIMFGSTVLAPLIMGLDPNVAIFM SGVGTLLFFLIVGGRVPSYLGSSFAFIGVVIAATGYAGTGLNPNIPIAMGGVIACGVVYA LVGLIVMWTGVGWIERLMPPVVTGAIVMTIGLNLAPVAVKGMGATNFEQWYAAVAVLIMG FVAVYLRGFLQKLLILVGIVIAYILYWLLTNVMALGKPIDFQPLINASWVGVPNFSAPVF QPEAMILIVPVVVILIAENLGHIKAVNVMTHRNLDPYIGRSFFGDGLATILAGFVGGPGV TTYGENIGVMAATRVYSTLIFPVAGCFAILLSFSPKFGALIQTIPGPLLGAVSVIVFGFI AAAGVRIMIENQIDLASSKNLIVTAVTLIIGAGDFSLKIGGFGLGGIGTATIAAILLNLI MEDKKLKKE >gi|301349847|gb|ADCQ01000003.1| GENE 100 108485 - 110113 1758 542 aa, chain + ## HITS:1 COG:NMB0626 KEGG:ns NR:ns ## COG: NMB0626 COG4108 # Protein_GI_number: 15676528 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Neisseria meningitidis MC58 # 4 533 1 531 531 718 63.0 0 MALLSPQAQKQVKRRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGAVKGRKAGRHATSD WMEVEKQRGISVTSSVMQFEYNDHVINLLDTPGHEDFSEDTYRVLTAVDCAVMVIDAAKG VEAQTIKLLEVCRMRKTPIITFINKLDREVQDPIDLLGEIENVLKIDCAPITWPVGMGKT FRGVFSLLDNRMKRFTPGGEKLSDDVEVIEGLGNPRLDELFPLEMDYVRESIELIQGASE PFSLERFLEGSQTPVFFGSGVNNFGVEDVLNALVNWAPTPQPRDAGKRMVEPDEAKFSGF VFKIQANMDPKHRDRIAFFRVCSGEYQPGMKVFHVREGKEMKIPNALTFMANDRVLMTNA VAGDIIGIYNHGQLHIGDTLTQGEVLGFTGIPYFAPELFRSARPKDPFKAKQLHKGLKEL GEEGAIQVFEDELGNLYLGAVGQLQFEIVAQRLATEYNVDAIYENTSVSTARWVTYPDEQ TRKDFEKEQGMRLAKDADGNTVYLATSIYNLQTTQKHWPQVTFHVTREHGQKLKHTDVDL DI >gi|301349847|gb|ADCQ01000003.1| GENE 101 110149 - 111363 1014 404 aa, chain - ## HITS:1 COG:CAC1651 KEGG:ns NR:ns ## COG: CAC1651 COG1160 # Protein_GI_number: 15894928 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 1 400 1 397 411 416 53.0 1e-116 MAEMNQTPKGMRVHIGIFGRRNAGKSSVINALTKQNIALVSDVAGTTTDPVFKAMEILPL GPVMIIDTAGIDDIGDLGKLRIGKTKEVMTKTDVAVIVIDAANDVSDFERSLVSEFKKLG TTYILAANKIETVADPAERIAFLDKAFGEKVVPISALKKKGIDELRSLIVKTAPEAFEDG PMLRDLVKEGDTVVLCVPIDTAAPKGRIILPQVHAIRDILDANAKAVVVKENQLAEQLDN LKEPPALVVTDSQVFAKADRAVPKEIPLTSFSILMARQKGNLSGLAAGAKAVENLKPGDK VLIAEACTHVCQAEDIGRVKIPAWLNKKVGGELNYEWYTGDSFPEDVSSYKLVIHCGACM INRRAMLSRQKKCAETGVSIVNYGVLISYLHGIMDRAMSPMKDN >gi|301349847|gb|ADCQ01000003.1| GENE 102 111451 - 112143 853 230 aa, chain - ## HITS:1 COG:no KEGG:Shewana3_0709 NR:ns ## KEGG: Shewana3_0709 # Name: not_defined # Def: formate dehydrogenase gamma subunit (EC:1.2.1.2) # Organism: Shewanella_ANA3 # Pathway: Glyoxylate and dicarboxylate metabolism [PATH:shn00630]; Methane metabolism [PATH:shn00680]; Metabolic pathways [PATH:shn01100] # 11 227 10 217 227 86 26.0 9e-16 MSNPEMKGARILRFHTSDKVFHSINAICWYALVITGAIVYFGHWMGDISDETANLMMVWH LWLGALFTLNFVGYVLFAPERFAVTLKNLLEWDKNTIMWFRNFGGYPRRFFKIPFGPVEV PPQGRYNGGQKMSYLIFLAAVVYLIASGWLLWLGAPLLGKTVFYWLFITHVWGSFIVTAM VTCAHIPLALLSMEHFKGIWRIGSGDISYEAAEHHAPTWVKRDVVKVVEK >gi|301349847|gb|ADCQ01000003.1| GENE 103 112136 - 112483 573 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860987|gb|EFL84062.1| ## NR: gi|302860987|gb|EFL84062.1| putative periplasmic [Fe] hydrogenase, small subunit [Burkholderiales bacterium 1_1_47] # 1 115 1 115 115 234 100.0 9e-61 MSKYQYTERDVPAMLGRRGFLKVIGLCAVLVAGAGAVITQLITSRNKVILDRQNGLYADD KRLQKINLTSSHQNDVCWQVYKDMNGKPVEGEMYKLNHTHYYPRSQLAMTEAEHV >gi|301349847|gb|ADCQ01000003.1| GENE 104 112501 - 113853 1563 450 aa, chain - ## HITS:1 COG:CAC0028_2 KEGG:ns NR:ns ## COG: CAC0028_2 COG4624 # Protein_GI_number: 15893326 # Func_class: R General function prediction only # Function: Iron only hydrogenase large subunit, C-terminal domain # Organism: Clostridium acetobutylicum # 97 431 2 298 371 196 38.0 6e-50 MSTMDVVTFRPPQGCRGEDGPAFQGNFRKGELRGIIHINKDNCVGCDTCRKFCPVDAISG GLGAIHKIRDDACVSCGQCLSACPFGAIEQMSFVDDVIAALKDPKKFVVAHPSPAVRVAL AEEFGGKPGDLCTDQMLNALEKAGFTVYDVNQTADQTILEEGTEFIKKVRYWCLGERSPE VNMMAHHPLPHFTSCCPGWVRNMEINFASAIPHVSTTKSPIQMGGALGKTWAAKHVWNKD PRDVCIVSITPCTAKIFEASRPEFIDAWKWNVEHNVIPKDSPVFPDIDYSLTTRDIAEVF RRLGIDPLKMPTTHEVKPTEKYTGAGTIFGCSGGVMEAALRTAYALLAGEELKNPDIISV RGLNNSLVEATVPIPLKAQGGKIFELRVAVVNGALQDLKNVMKIINEDKDRWHFIEVMNC PGGCVNGGGQPLQGAGSSWLAPTTPLPVKL >gi|301349847|gb|ADCQ01000003.1| GENE 105 114091 - 115437 1427 448 aa, chain - ## HITS:1 COG:Cj0363c KEGG:ns NR:ns ## COG: Cj0363c COG0635 # Protein_GI_number: 15791730 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Campylobacter jejuni # 31 447 9 424 448 310 41.0 4e-84 MEERSTETIRNAYKGNVKHGKSEAIAPKWVLQSTEAVMQYYLDRDLTLDRCVLEKFPLPQ EGHKYMLYAHIPFCKTLCSYCTFHRFLFKEHKAREYFVNLRKEMEAVRAMGYDFTSMYVG GGTTTVLMDELAKTLELAKKLFPSIKEVSVETDPQIMGDPQIHMLEGLVDRMSIGVQSFD DGILKMTERDKFGTGQEVFENIAKAQELFPICNVDMIFGFRGQTDEILHRDLETLLKLSP RQITTYPLMVTSQTKRSVKDSIAAPHDIMAGQYRMILDMLTEDYTQLSAWAFGKSNNEGF DEYVIDNDEYLGVGSGAFSFLGDSLYVNTFSLRRYNERIGSGNNGVERRKVFGKRSILQY RLLLQLFAGRISRKYFKEVHGVDLDRALFKEVLALKLAGAIKENPEDHDRFIVTDKGKLL GLVMMKDFYSAMDNIRAELRKPLKEADM >gi|301349847|gb|ADCQ01000003.1| GENE 106 115492 - 117342 1320 616 aa, chain - ## HITS:1 COG:AF0200 KEGG:ns NR:ns ## COG: AF0200 COG1022 # Protein_GI_number: 11497816 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Archaeoglobus fulgidus # 7 609 8 600 601 271 31.0 2e-72 MERELTETKEQRAEALNSLSTLCDFFQNRVLKGPSDEALREFNRATKEWVSVTYKELGEK VKNWQRAFADLGLNRGDRVAMLLPNGVNAVCFDQAAMANSLVPVPLHAIDTPASSAFILQ DSGASVLVTDKKSKWEKIQEAGFDLSAIKKVIITEELTEASELIQGLKDWLKGAPKDIPL PEQPTVDDLACIVYTSGTTGRPKGVMLTHKNITSNVRSTLAHVKPEIGDIFLSFLPLSHM FERTAGYYLALATGSTIVFNRSLQYLAEDFKIAKPNVLISVPRVYERIYAKLNDALAKKG KIQAALFHMAVNAGWQNFCKKNSIKTAGSQGLMFGGLVNATVGKKISEKLKSQFGGRLRV AISGGASLNPEAAKVFCGLGLPVIQGYGMTETSPIISGNNVTDNDPATVGRALKDVSIRL GEREEIQIKGDLVMKGYWDREKDTKNAFTEDGWLKTGDQGAYDGEGRLKIVGRIKEIIVT STGEKISPVDIESALETIPLFRQTYAVGDGMPYIAVLISLDPTLWKKFAAEQGVDPKDPE SIHAPAVRKKALEMVKKACRTFPAYAVPKNIALTLDEWTIDNGLLTPTLKLKRSPMQARY GHLIEEMYKGAKKSRI >gi|301349847|gb|ADCQ01000003.1| GENE 107 117472 - 118059 752 195 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860991|gb|EFL84066.1| ## NR: gi|302860991|gb|EFL84066.1| proline-rich region [Burkholderiales bacterium 1_1_47] # 1 195 1 195 195 171 100.0 2e-41 MRMKLIRTAACLAALGLAVCTAVDARPPGPPPGGPGFGPGPGFRGPGWGGPPPPPRHHHN RWHDFGRDVLGGTLVLGLGLGLANAITNATTPTYTAPTYVAPSYVAPTYAAPTYTLPTYT APVVTAPVVSAPVVTAPAVTAPVVTAPVVAAPVVTAPVVTAATIPGKTMYWCQASKNFYP YVTECTSGWEARVMP >gi|301349847|gb|ADCQ01000003.1| GENE 108 118143 - 119972 1543 609 aa, chain - ## HITS:1 COG:RSc0975 KEGG:ns NR:ns ## COG: RSc0975 COG0488 # Protein_GI_number: 17545694 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Ralstonia solanacearum # 1 606 1 633 636 533 47.0 1e-151 MSFVTMMEGHLAWGDKPLLDNADLTVEAGQRIGLIGRNGTGKSSLLKVLAGIEKLDGGEL HTQNGLHAVYVEQEPYFPEAPTVMDSLVLRGKLDELPDEKMRWQIQSRLSEFLHKFDLDE NLDLKKASGGEKKKAGLALAFALDADLLLLDEPTNHLDIDAIRQLENIILNEFKKSRSFV TITHDRAFLNRIVDTIWELDRGVVRSYPGSFEAYQRRKEEELAAEDKARADFDKVWTQEE AWIRRGIEARRTRNEGRVRRLEQMRIEREQRRDRIGTLDLNLDAGERSGKVVAELEGVSK SFGDRCLIKDLTLRVMRGDKLGLLGPNGVGKSTLIKIILGQMQPDSGTVKLGTNLQIAYF DQLRSELDPTKTLQETVSPGSDWVEVGGVRKHVIGYLGEFLFPPHRVNVKVSSLSGGERN RLLLAKLFAKPANLLVMDEPTNDLDIESIEMLEATLAEYPGTVLLVTHDRSFMDNVATLT IAPDKDGVWTSYVGGYEEWLKWRDKREKEEQKAAEAAAQADKSQKTRRRNAKPGLSYKEN KLLQELPGQIEALENRQNELVELMQQPSYGSKAPEQIRADGDEMQKIAKELEEKYALWEE LEEKQSLAN >gi|301349847|gb|ADCQ01000003.1| GENE 109 119969 - 121117 830 382 aa, chain - ## HITS:1 COG:no KEGG:Msip34_2311 NR:ns ## KEGG: Msip34_2311 # Name: not_defined # Def: putative lipoprotein-like protein # Organism: Methylovorus_SIP3-4 # Pathway: not_defined # 39 352 192 491 507 77 25.0 1e-12 MCRVSLSLITAAAVTTAAAQQSEIGPTTDAQVQSQNKTKIALIVSPKGSVLSEAAAPIQQ GILAASREATASGACELVQYELSNPQDAGAVLKKAADDGAVLAIGPVSRDAVQTISEMPY LPLPVVAINRPSGETAPELFLSIDISAESEVEQLAKIAVENTAQKADLAANNFVILTTQD PYDERLARAMEAALVKAGAGAERRHISSDQIAYLRQEMRGKAFRGAFFAMNAQNASLLRP YLPPELPVFGTSYSNPMHQKDSMLAKTQSNDLNGMITLEIPAEENTSTLVAQYKGERENL SLEELQMFSVGVDAWTLGTKWIDWARRIEVPDGLTGRLSFDKDSGSKVKRELVKTVVSPN KTGKASEEDLVQFTESAEEAGL >gi|301349847|gb|ADCQ01000003.1| GENE 110 121143 - 122063 542 306 aa, chain + ## HITS:1 COG:VC0582 KEGG:ns NR:ns ## COG: VC0582 COG0313 # Protein_GI_number: 15640604 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Vibrio cholerae # 26 294 11 281 288 210 40.0 3e-54 MDSRKFLYDNNELFQSISLPSQDLPAPALYVVGLPIGNLGDITLRALLVLSKADCIAAED TRETRKLLEKFNIESHLFPVHQHNEHKGAEKVLTYLAEGKRVALVTDAGTPAVSDPGTKV VAQVRGQGYRVIPIPGASASVTAVSAAGMAPEGFTFHGFLNGGKKERAGELQKLINSGRT FILYEAPHRLEKLIDELSESVPADRKITIARELTKKFEQIDSLYAPDLREWLSRNPPKGE YVIVVDAASTSAEETLKEEDKQWIDELIPLLPAGQLSAIASKISRFPKKIIYNYIVSKKN SLTTMD >gi|301349847|gb|ADCQ01000003.1| GENE 111 122090 - 123298 1360 402 aa, chain + ## HITS:1 COG:PA0141 KEGG:ns NR:ns ## COG: PA0141 COG2326 # Protein_GI_number: 15595339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 124 378 25 279 298 370 70.0 1e-102 MSNSKKQKDHSELVDEKVEVSTVSESDVAASKEEDPFHTAVESITSSPVTSEKEAEEYVS NQTFAAANEHEMQALISILEGEAPADRKAILKALVQREKLKEGASKKTEVNENELNEDWK HGGYPYKNRMSRKIYEKEKYLLQVELLKLQNWVKETGQKVVILFEGRDAAGKGGTIRRFM EHLNPRGARVVALEKPTQRELGEWYFQRYVKHLPTAGEIVLFDRSWYNRAGVERVMGFCT DDQYLEFMRECPEFERFLTRSRIYLIKFWFSVSRKEQRRRFKERQVHPLKRWKLSPIDMA SLDKWDDYTKAKEAMFLNTDTVAAPWTVIKSDDKKRARLNAMRYVLQSLPYTGKDMNAIG AIDPLILGRANTIYEKGEHSDILLQLSTHLAEKNTETKKKSK >gi|301349847|gb|ADCQ01000003.1| GENE 112 123377 - 123856 526 159 aa, chain - ## HITS:1 COG:CPn0877 KEGG:ns NR:ns ## COG: CPn0877 COG1881 # Protein_GI_number: 15618786 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Chlamydophila pneumoniae CWL029 # 4 156 1 148 150 117 40.0 8e-27 MEKLEIQSPAFATGAPIPKEYTQQGSDMSPPLEITNIPKGTQSLVLVCVDPDAPDPEAPK LTFVHWVAYNLPAQDLSIPEGADLENLFPGSCEGVNGRGTVGYIGPKPPIGTHRYFFKVF AVDTVLSFNEPPELKDVFNAIDGRVVQMAETMGTYKLQF >gi|301349847|gb|ADCQ01000003.1| GENE 113 123871 - 124326 514 151 aa, chain - ## HITS:1 COG:MK0525 KEGG:ns NR:ns ## COG: MK0525 COG0517 # Protein_GI_number: 20093963 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Methanopyrus kandleri AV19 # 4 126 2 124 196 82 37.0 3e-16 MRARSIKIIDLSVHTVATIPLGTSVLDCSKAMRALHVGSLVVINDDRQPVGMITDRDICI EVVALEKDPKGLKVEDVMSAPVCTASADETVVDALARMREQGIRRLPVVDKDDKLCGIVT ANNIVEEISEQLDSIVRAIKSSKTREQSVRP >gi|301349847|gb|ADCQ01000003.1| GENE 114 124472 - 125377 616 301 aa, chain - ## HITS:1 COG:VC1432 KEGG:ns NR:ns ## COG: VC1432 COG0037 # Protein_GI_number: 15641443 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Vibrio cholerae # 27 290 3 268 310 289 51.0 5e-78 MEPVKIEELKDQTEQNISTAEESASEAPSEEKKERLSFENRKLEKRLVRLCAQAITDFNL IEDGDKVMVCVSGGKDSYALLDALVRLQGRAPIRFELLAFCLNQHLPDFPLDRLIAHLEK IGVPYHIEDQDTFSIVKSKYSDNRNLCSLCSRLRRGIIYRVAREQKCTKIALGHHLDDVV STLMLNMFYGGRLKSMPPKLLSDAKEHIVIRPLVYLREKDLARWCRIKGYDVIPKLCGAD DVCRREMKEIIQRTDRETPGRVENIFRSLTRVAPSHLLDQSLFDFKDLEKERITPETSEE V >gi|301349847|gb|ADCQ01000003.1| GENE 115 125377 - 125781 351 134 aa, chain - ## HITS:1 COG:RSc0157 KEGG:ns NR:ns ## COG: RSc0157 COG1539 # Protein_GI_number: 17544876 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Ralstonia solanacearum # 14 127 15 130 130 79 37.0 2e-15 MNSDPLLISGKYWKISLNRYETKARIGAYQHERLLPQRLRLNVSVYVEKGAAPVSELSEV FNYDRVIEAIEAVVQEGHIDLQETLLERTAERLLKYPEVAAVQIGSEKPDAYSKAESIGV EAFFSKDKERIKTE >gi|301349847|gb|ADCQ01000003.1| GENE 116 125825 - 126016 165 63 aa, chain + ## HITS:1 COG:no KEGG:Reut_A0223 NR:ns ## KEGG: Reut_A0223 # Name: not_defined # Def: hypothetical protein # Organism: R.eutropha # Pathway: not_defined # 1 63 2 64 64 66 55.0 2e-10 MRWILTIFIGLCVLTSAIPWLQKLGIGRLPGDLNFKVFGHPIQIPLASTILIAVVLMLIG KFI >gi|301349847|gb|ADCQ01000003.1| GENE 117 125990 - 127102 736 370 aa, chain - ## HITS:1 COG:NMA1410 KEGG:ns NR:ns ## COG: NMA1410 COG0617 # Protein_GI_number: 15794322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Neisseria meningitidis Z2491 # 3 358 1 395 417 244 40.0 2e-64 MSLKKYIVGGWVRDKLLTELGHPIQSNDKDWVVTGATPEEMLRLNFVPVGNDFPVFLHPK THEEYALARTERKSGHGYKGFTFFADPSVTLEQDLLRRDLTVNAMAMDEEGHLIDPYGGF EDLKKGVLRHVSAAFEEDPLRVLRVSRFRAKLPWFRIAEETKAMLKRMVESGEVDALVPE RVTAEIRKALKEAKPSIFFDELETNGFMGRVYPEWKQTELSRSLLDGLSSGFTEEEKFAA SVASVDPNKLPALLEALRMPKKLTEFALLFSESLRDGFECASDGKGVLSVLRRKDALRRP ERFAQLLRLLKEAHHIDSEKKWLMSAEAVRSLDFRSISAAAPDKSRVPELIEEASVRAID KALDKFADQH >gi|301349847|gb|ADCQ01000003.1| GENE 118 127139 - 127690 303 183 aa, chain + ## HITS:1 COG:RSc0089 KEGG:ns NR:ns ## COG: RSc0089 COG0212 # Protein_GI_number: 17544808 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Ralstonia solanacearum # 3 179 20 199 201 97 33.0 2e-20 MDKKSERARVLKERNALSTAKRGELNHALCSFLSDFLDSVKVQTIGAFLPIGSEPDISEV LKNWLRAGAARQVFLPVTEGKTMRFAFWDPAKPLKIGRFSVPEPTSDLFSEPPLLLVPCV ALNKQGYRLGYGAGYYDRYLAACAEKPFTVGICFSEFCGLDFEAQTFDAKLNAVISDSGF SRF >gi|301349847|gb|ADCQ01000003.1| GENE 119 127694 - 128989 1258 431 aa, chain - ## HITS:1 COG:PA4439 KEGG:ns NR:ns ## COG: PA4439 COG0180 # Protein_GI_number: 15599635 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Pseudomonas aeruginosa # 1 392 1 392 448 454 56.0 1e-127 MTVRVLTGVTPSGTLHLGNYVGAIRPAIQKSRAEGTESFYFLSDYHALIKTSDPDRVEKS RIQIAATWLACGLDPKRVHFYRQSDLPETLELNWILNCVTSKGLMNRAHAYKAKVEANEA AGEDPDNNVTMGLFCYPILMAADILIFKANFIPVGRDQIQHIEMCRDIATRFNQMYGNGE EIFPLPEALIDEDTAILPGLDGRKMSKSYDNVIPLFEGGEKALREAIMKIVTDSKLPGEP KDPDSTSLTALYDAFATHEERNEFRRKLQEGLGWGEAKVIVFEKINSEIGPMRERYEAYM QEPEKVEAILREGVERIRPMARALVDRCRNAVGLRAFKPLQAKKAAVKAKKSKASLKQYR EKDGLFYFKLVNGQGKTLLTAGGLPSGKEVGAHLQSFKASGLGALKGIFCQLDAEATEAE VQSALDELTQE >gi|301349847|gb|ADCQ01000003.1| GENE 120 129081 - 130271 1608 396 aa, chain - ## HITS:1 COG:RSc0134 KEGG:ns NR:ns ## COG: RSc0134 COG0192 # Protein_GI_number: 17544853 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Ralstonia solanacearum # 5 396 2 388 396 606 78.0 1e-173 MNKSAKEYLFTSESVSEGHPDKVADQISDAILDAILEQDPTARVAAETLCTTGTVMLAGE ISTTANVDYTKIVRDTLKRIGYDDSSYGIDHKGCAVLVAYDKQSPDIAQGVDKAQDDPLE KGAGDQGLMFGYACDETDALMPAPIYYAHRLVEQQSLMRRTGEMPYLRPDAKSQVTMRYV DGRPVSVETVVLSTQHAPEMSEGDKMKPEFVQAVIDKIVRPVFPPEMLKDTKFLINPTGR FVVGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAG LARQCQIQVAYAIGVANPVNITVYTEGTGVIPDEKIAELVREHFDLRPAGIIKMLDLQRP IYSKTAAYGHFGREEPEFTWERTDKAQALRKAAGLA >gi|301349847|gb|ADCQ01000003.1| GENE 121 130494 - 131390 748 298 aa, chain + ## HITS:1 COG:NMA1630 KEGG:ns NR:ns ## COG: NMA1630 COG1560 # Protein_GI_number: 15794524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Neisseria meningitidis Z2491 # 32 298 21 289 289 180 34.0 2e-45 MAKKSALNLLISKTCVALVNGMSGWKQTSRTRLANFLASVTWYVLARRRKIALTNLRLCF PEWSEQKRVETAKGVFRNLIRAALDHSVLAKGTEAQVLEMVKFEGKEQFEELCKTDKVII VAPHFVGLDAGGIAMNTIVRGASLYQTQSNPVWDKWAFDARKRFSDPVLIPKSNSAMKEV IRALRASLPFYYLPDMDHGARNSVFVPFFGVQAATLPMVSKLAKLTGAKVIWGIAETTPE GYVMHLSKPLENFPTSDATADTLRLNQELEQFILKHPDQYLWTHRRFKTRPEGEPSVY >gi|301349847|gb|ADCQ01000003.1| GENE 122 131643 - 132476 684 277 aa, chain + ## HITS:1 COG:RSc0137 KEGG:ns NR:ns ## COG: RSc0137 COG0253 # Protein_GI_number: 17544856 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Ralstonia solanacearum # 1 276 8 283 292 300 55.0 2e-81 MHGAGNDFVVLDCTREPFSLTPQQLRFLADRHFGIGADQILVVEPAEAGEADFKYRIFNA DGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVSMGTPSFEP SSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPHVTIVTDDIESAPVKELGPF IENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSIELGVLSSPI LTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP >gi|301349847|gb|ADCQ01000003.1| GENE 123 132473 - 133150 514 225 aa, chain + ## HITS:1 COG:no KEGG:Tint_2230 NR:ns ## KEGG: Tint_2230 # Name: not_defined # Def: protein of unknown function DUF484 # Organism: T.intermedia # Pathway: not_defined # 14 224 11 221 223 79 26.0 1e-13 MSENPTVVDFVIDYLRANPDFLLRHPELFLHLSLPGQAPDGSRTPAECQNEALKAALSSC QIKEEERRLRESSLSSDAKSEEIIRFATDLLACHSQVELPNLVLSFFISEFKAAHGLLRL WPVKPNFSFFPFAERLGPDVEAALDSIENFYLGENYGDEVAHWLKIDPVETRGVLILPLR GHTGAVFGMICLCDADEKKFTQGTSPKFLKMAAKVAETALTPLIN >gi|301349847|gb|ADCQ01000003.1| GENE 124 133159 - 134385 595 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 16 402 12 390 396 233 35 3e-60 MTNQIPTIILKPGKERALLRRHPWVYATGVSKVLGKPKSGETVRIQDSKGKFLAWGAFSP ESALRARCWSFQEEDVIDAAWIEARVKAAIEARSCLRSRTNAIRLIFGEADFLPGLIVDQ YNNQVVTQFQSAGVEYWRSVIGQALVKYTGCSQVYDRSDAATRAREGLPERKEVLEGEEP PQEVEIVEDGIKYGVDVRMGHKTGFYVDQRDNRALARRLAEEFKRVHGRGMRALNCFCYT GGFSLALKAGGAEEVVSIDSSADALQMAQENAKRNGFDDGSMKWIEANVFEALREFRDKG EQFDLVILDPPKFASSHHHVDKAARAYKDINLNGLRILAPGGQLLTFSCSGAIDVDLFQK IVAGAVIDSRVEAWMMARLGAGIDHPLLMTHPEGEYLKGLYLLSRGRV >gi|301349847|gb|ADCQ01000003.1| GENE 125 134521 - 135648 1113 375 aa, chain + ## HITS:1 COG:RSc0047 KEGG:ns NR:ns ## COG: RSc0047 COG0523 # Protein_GI_number: 17544766 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Ralstonia solanacearum # 6 375 1 362 362 385 55.0 1e-107 MLGGAMEDLIPVTIITGFLGAGKTTLLNRILTEEHGQKIAVIENEFGEESIDNDLLVQSE DEEIITMNNGCICCTIRGDLAENLIRLMERKKEGKANFDRVIIETTGLADPGPVAQTFFM DEEVAQFYMVDGVITVVDAVNGPRTLDEQAPAQAQVGFADRILLSKVDLVPPSVIEDLSD RLHHMNPRAPIVECNMGNVDIKEVLDIRGFNLDSVLELDPDFLKEAHEEGEHHHHHEDGC TCGCHDHDHHDHDDHCECGDHDHDHCECGHHHHHARHDDEIAAFVFESDRPFDPARLDNY MRTLTQVYGPDMLRYKGVLYMTGTDRKMIFQGVHMLMAADLGNPWGDTKPSTKMVFIGRR LPKKAIMQGLETCLA >gi|301349847|gb|ADCQ01000003.1| GENE 126 135681 - 136394 927 237 aa, chain + ## HITS:1 COG:RSc0046 KEGG:ns NR:ns ## COG: RSc0046 COG1734 # Protein_GI_number: 17544765 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Ralstonia solanacearum # 106 237 8 139 139 160 68.0 2e-39 MATKKKTTVETDKPAKTVKAVKTTAKTTAAKPAAKAVKETKAPKTAACNKALKEAAELAP LVQSAKDGTGENTSVEDAQKAAEFLMNNYEKSSEEKIIVDGIVIPTQAELLNMPESDYMN ERQQAFFKHLLREREAQLRSNAGQTAEHLRDNTIIPDMADRATIEEEHALELRTRDRERK LLKKVQEALQRLEKGDYGWCEETGDPIGIPRLLARPTATLSLEAQQRRELRQKLYGN >gi|301349847|gb|ADCQ01000003.1| GENE 127 136461 - 136667 322 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302861011|gb|EFL84086.1| ## NR: gi|302861011|gb|EFL84086.1| cation-transporting ATPase, P-type [Burkholderiales bacterium 1_1_47] # 1 68 1 68 68 116 100.0 4e-25 MEQSFELSGVHCMHCVARVKKALEPLCEKVEVTLSPAIAVVTVKEPLKIEDVNAALAKAG DYSATPLN >gi|301349847|gb|ADCQ01000003.1| GENE 128 136762 - 137655 1047 297 aa, chain + ## HITS:1 COG:RSc0033 KEGG:ns NR:ns ## COG: RSc0033 COG0548 # Protein_GI_number: 17544752 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Ralstonia solanacearum # 6 296 19 308 310 422 75.0 1e-118 MNTLNSQFVPAQLKAEILSEALPFIQKFHGKTIVIKYGGNAMTEERLQRAFARDVVLLKL VGMNPVIVHGGGPQIGDALRRVGKQSEFIQGMRVTDAETMEVVEWVLGGQVQGDLVTLIN SFGGQAVGLTGKDGGLIRAKKLKLQDIHDPTVFYDVGQVGEIESINPAVVKALQDDAFIP VISPIGVGDDELSYNINADVVAGKMAETLKAEKLVMLTNTPGVLDKEGNLITGLTSQEID ALFADGTISGGMYPKISSALQAARNGVKAVHIIDGRVDHCLLLEILTPQGVGTMIKG >gi|301349847|gb|ADCQ01000003.1| GENE 129 137670 - 138269 476 199 aa, chain + ## HITS:1 COG:RSc0031 KEGG:ns NR:ns ## COG: RSc0031 COG1309 # Protein_GI_number: 17544750 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 8 198 27 218 218 136 38.0 2e-32 MDVSTETKSRKKSSDRKLEILRTLVRMMTESENKHITTKSLAAAIGISEAALYRHFPSKA KMYEEIIGFAENYVMTAVNNISSSEYSGLEQAKKLFLALVDIKAKEPGLVFLFCGDSLTS EDPRLQGELNRFYGQLQAVFKQSLRLAVAQEEVPEGYDVLTRANMLVALILGHWLRFAKR DASGGAVDPEKQVYLVLGK >gi|301349847|gb|ADCQ01000003.1| GENE 130 138334 - 139824 1527 496 aa, chain - ## HITS:1 COG:RSc0352 KEGG:ns NR:ns ## COG: RSc0352 COG0793 # Protein_GI_number: 17545071 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Ralstonia solanacearum # 1 475 15 491 549 362 46.0 1e-100 MKNSVRGLLLVTGGMIAGALISASLAAPERAARTVLPLDEIRQFTDIYGAVKQYYVDPVE DKKLMKEAISGMLQGLDPHSAYLDENAFNELQEGTTGEFGGLGLEVSSDPSGVKVISPID DTPAARAHMRAGDIIFKIDGKIVKDLPLNDSVKMMRGKPDTPIELTVLRKGSSTPITVKL VRAVIKVKSVKSKPLDDHMGYIRVSQFQERTASELAKALDALNKSGNLKNGLVLDLRNDP GGLLNAAIGVSAAFLPKGTLVVSTKGQTADAKKEFLTTPQDYQVVREDAAIAKLPAITKT MPIVVLVNGASASASEIVAGALQDHKRATIMGTKSFGKGSVQTVIPLRGEAKNTAIKLTT ARYFTPSGRSIQAKGISPDVEVKDTAEGNFLDLDIREADLANHLEVPETKDDKAKAAKPA AEAKPDASGIKETVEPISSKPKKAPKFYKYGDPDDYQLNQAIAYLKKEDAKKNQSAAGTQ EIQLEGGIKMKIEPVK >gi|301349847|gb|ADCQ01000003.1| GENE 131 139876 - 141252 646 458 aa, chain - ## HITS:1 COG:XF2705 KEGG:ns NR:ns ## COG: XF2705 COG4942 # Protein_GI_number: 15839294 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Membrane-bound metallopeptidase # Organism: Xylella fastidiosa 9a5c # 82 456 65 452 455 131 27.0 3e-30 MRIRFSAATAVLLALAAFAFQTVYAAPEPQGRSVSAAKQTTKARTTQKQVSKKVPKKTAK QLAVRKATSTSKAASRRPAADKTAIEARRAETQNRIEEVRSSISQKSSVKKKLEEEMKQS EVKIREVRQSLQKLRRERAKSERTLKSQEKTVLGLENELSHEQKILEEINRQRLELLTLE RQPQWAASDPNQKARTHMMLSLLAKKSTESIHRLEKNQKELSRALERSKRTSDSLQKTLQ EERSEQTRLTKERRERQLTAAKLNRELASQTMTLKRLQNDEKRLGSLVASLQRKEAEAQK AAQRRAAAAAKRSGKQTKTASVPAPQKALVSTGPRMNPVPGKVVARFGEKRTVSGKTDRW QGTVFSVTRDEGVHAVRDGKVVFADYLRGYGNLIILDHGAGYFTVYGNNATLEKDIGDKV KAGDVISRAGKNEGAVSVLYFELRHNGKPIDPTGWLNI >gi|301349847|gb|ADCQ01000003.1| GENE 132 141264 - 142013 915 249 aa, chain - ## HITS:1 COG:RSc0353 KEGG:ns NR:ns ## COG: RSc0353 COG0588 # Protein_GI_number: 17545072 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Ralstonia solanacearum # 1 247 20 266 267 333 64.0 1e-91 MYKIVLMRHGESQWNLENRFTGWVDVDLTEKGREEAARAGEILKAEGYEFDLCYTSVLKR AIRTLWITLDKLDAMYLPVIHDWRLNERHYGALQGLNKKETAANFGDEQVLIWRRSYDVP PPALEKDNPMWPGFDPRYKHVPAEELPLTECLADTVARVVPYWENEIVPNIKAGRKILIT AHGNSLRSLIKHLDNISDKDIVGVNVPTAVPLVYELDENMRPIRSYYLGDQEAIKQKMAA VAAQGKAGK >gi|301349847|gb|ADCQ01000003.1| GENE 133 142229 - 142666 470 145 aa, chain + ## HITS:1 COG:RSc0354 KEGG:ns NR:ns ## COG: RSc0354 COG0607 # Protein_GI_number: 17545073 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Ralstonia solanacearum # 7 130 20 149 151 81 38.0 6e-16 MDFITENILLIITFVGSAILLAFPSLSKSKNSGLSPAEVVIQVNDKDAQLVDVRTPNEYS KGSLAGAVNIPAADLVSRIDTLDKNRPVILVTQNGRRAQQELKQFKSKGFSDVYVLEGGL VAWQAAKLPLTGLEINRRNNKKKKA >gi|301349847|gb|ADCQ01000003.1| GENE 134 142716 - 143228 767 170 aa, chain + ## HITS:1 COG:RSc0356 KEGG:ns NR:ns ## COG: RSc0356 COG1952 # Protein_GI_number: 17545075 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecB # Organism: Ralstonia solanacearum # 20 163 17 159 173 131 49.0 7e-31 MAENENTTPEAAPQEEAPQFAVQRIYLKDASLEMPNAPEIFLAPEAPQVDIQLDVSEHAL AQPDLYEVVVRATVTAKTKINNEDRTVFLVECKQAGIFLLKGFQEEHKTMVLGITCPSTI YPYLRSNVSDLLTRAGMPPVYLGEINFEAYFAQRMQEQQAAAAAEDKTVQ >gi|301349847|gb|ADCQ01000003.1| GENE 135 143297 - 143767 412 156 aa, chain - ## HITS:1 COG:RSc0358 KEGG:ns NR:ns ## COG: RSc0358 COG0219 # Protein_GI_number: 17545077 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Ralstonia solanacearum # 1 155 1 155 156 207 63.0 8e-54 MFNIVLVHPEIPPNTGNIIRLSANTGCKLYLIEPLGFNFEDKHMKRAGLDYWEYADIKRF PSYEAFLEAEKPDRDRMFAMTTKAQQLVQEVSFKPGDWFVFGSEGSGLPQEVRALFDPAH MVRLPMRPNNRSLNLSNSVAITVYEAWRQCGFEGGI >gi|301349847|gb|ADCQ01000003.1| GENE 136 143760 - 144680 674 306 aa, chain - ## HITS:1 COG:RSc0374 KEGG:ns NR:ns ## COG: RSc0374 COG0568 # Protein_GI_number: 17545093 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Ralstonia solanacearum # 22 301 24 303 306 277 52.0 2e-74 MTTDEKKKGPSTALAPYKPTPLAIPDASLGSLEEYIRAANKAPILSAEREHELAVRLQEH GDMEAAGELVMSHLRLVISIARQYQGYGLPFGDLIQEGNIGLMKAVKRFNPNNGARLVTF AMTWIKSEIQEYVLRNWRLVKVATTKSQRKLFFNLRKLKDDTKLLGTSEAEKIAETLDVK PSEVFEMEKRMLGSDVEIDEPSGGTDEGMAPSEWLTDERDTPENTIARGAYENTIENRLP EAVKKLDDRSRRIIEARWLYNDQDGSKGATLADLAKEMGVSQERVRQLEKKAFATLKTYL KEDKDV >gi|301349847|gb|ADCQ01000003.1| GENE 137 144711 - 145565 541 284 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302861021|gb|EFL84096.1| ## NR: gi|302861021|gb|EFL84096.1| hypothetical protein HMPREF0189_01459 [Burkholderiales bacterium 1_1_47] # 1 284 1 284 284 526 100.0 1e-148 MITMRDRVRRPIQANLKRFIFVVVVFSLALCLLGQIALSFYCFYDSHRGVMGDEASVFLD PSLTDAQRKKAQEQIRALAPITELREIKPTDVLEKDILKLVGDRKKIPTILALQFPLDTR YIDIEGAVKAIEKVKGVEGVTANLDWIKKRHSLREAIALGMFAFGAPAVTLVCLLIFQNS LRLSAFLRSERELLLMLGASDWAVRGPQMIAAALSSLLGCIIGGVLLLATTLTSVPLLEE AFELTLMPHWSVFAAVYLSVSLATILLSVIVSYFIAGATSPRTF >gi|301349847|gb|ADCQ01000003.1| GENE 138 145562 - 146215 216 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 23 199 28 200 309 87 29 3e-16 MKTIVRMVDVPINDWNNQTKGTVTLEISDGEFVLLLGPNGSGKSYLLNLMAALRVPRVGE VFLEGKRLTKMSERQKRAWRAGLGLIPSDPVLLNGYTVLEGLVLTAQLLGKSAADAKRNA LESASLCGLDPYLNARAESLSVGVKKRVVIARSLVNQPRLILADSPLEGLDDQAQEEFLY ICTKLSQVGYPIVMTSSYMLPFEIAALRCVELSGEKR >gi|301349847|gb|ADCQ01000003.1| GENE 139 146212 - 147675 829 487 aa, chain - ## HITS:1 COG:NMB1467 KEGG:ns NR:ns ## COG: NMB1467 COG0248 # Protein_GI_number: 15677321 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Neisseria meningitidis MC58 # 3 486 9 501 502 335 37.0 9e-92 MKLAAIDLGSNSFRLEIARVEGERIITEGSWKETIRLAAGIDKDGNLTPEAQNRGLNALA RIAEKIRGMPRNHIRAVGTQTLRAAKNSQEFIERAEKILDCKVEILRGKEEARLVFQGCS FALPPSDETRLIVDIGGASTECVIGRGHEMIEGESFHVGCVNTSVTFFKDRKITAQSMER AILSAASVLDGSEYRFVKGNWQEAFGSSGTVSAVSSILAALRITDGSITLYALEQLKDKV IHAESIDKIKFDGLKEDRREVLAGGIAVLIAVFKKLKIDVMKVADGALRYGILYDLAGRK LQRDPREASVERMMNAFHADKEQAKRVGDIAVNLLKTMSPHASEDSARFLRWAADLHETG LTLSRSDYHKHSEYLIKNSDIAGFSRPEQEKLAALVLGHRGNLKKVEMLLATKQNAELLF CLRIATIVAHARQEIELPELEATFHGHSFCLYVPRAWLKDHPVVEYLLEEEKATWAKVDY QFDLIAR >gi|301349847|gb|ADCQ01000003.1| GENE 140 147672 - 148619 665 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 13 304 21 319 336 260 45 2e-68 MSETKEKTGWFARLKQGLRKTQVNLVGIFTGGVVDEAFLEDLEFQMISADIGVETSALIL ERLRERIKLKGLKTQDEVKVALKEIIADILRPCEASLNFDEHKPLVIMMCGVNGAGKTTT IGKLAKHFAQLNKKVLLAAADTFRAAAKEQLAVWGDRNQIEVISQEKGDPASVAYDAISS GRKKGMDIVMVDTAGRLPTQTNLMNELARIRKVQGKAMEGAPHEVILVLDGTNGQNALMQ AKAFDEAAGLTGLIITKLDGTAKGGVLVALANSREKPLPIYYIGVGETIDDLQPFKADEF AAALVGLDQIGGKKE >gi|301349847|gb|ADCQ01000003.1| GENE 141 148670 - 149254 537 194 aa, chain + ## HITS:1 COG:RSc0389 KEGG:ns NR:ns ## COG: RSc0389 COG0742 # Protein_GI_number: 17545108 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Ralstonia solanacearum # 8 161 23 173 215 131 46.0 6e-31 MPATNSGKVRIIGGQWKRTNIPVLNADGLRPTGDRQRETLFNWLSFLLGDFEGRSALDMF GGSGALSFEFLSRGGSRAVLCEMNRRAAQFIKQTAEKLDAEGLTIIVGNSLTDPRVSELS PYDLAFIDPPFAADLQLKALKRCVPMLASDGLIYVESPQEISDEILTSLSLTAARRLKAG ASRMLLAQKTENPS >gi|301349847|gb|ADCQ01000003.1| GENE 142 149251 - 149748 343 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 3 156 5 158 164 136 42 5e-31 MITATYPGTFDPLTKGHLDLIRRACWIFPKLIVAVAESKRKHTLFTLEERVQMAKEAVKG FPNVEVVGFEGLLVDFVRRHGSTCIVRGARAVSDFEYEFQMAGMNQKLMPEVETIFLTPA EQFQFISGTFVREIAMMGGDVSGFVPQNIRAALERKRIELKQTSL >gi|301349847|gb|ADCQ01000003.1| GENE 143 149729 - 150151 281 140 aa, chain - ## HITS:1 COG:RSc0455 KEGG:ns NR:ns ## COG: RSc0455 COG0537 # Protein_GI_number: 17545174 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Ralstonia solanacearum # 5 123 10 128 147 102 40.0 2e-22 MTQNCPLCAPEGEHVIVENDKFRIIRVDDPEFPGYFRLIWQDHLKEVSDLDPGDRLVMWD ALTRLEEAVIEAMHPEKVNWAQFGTMVPHLHWHLIPRFPDDAAFPDSYWSPRRRETDPKV LAEREQAARRCAELIKERFA >gi|301349847|gb|ADCQ01000003.1| GENE 144 150148 - 154056 2954 1302 aa, chain - ## HITS:1 COG:RSc0454_1 KEGG:ns NR:ns ## COG: RSc0454_1 COG0277 # Protein_GI_number: 17545173 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Ralstonia solanacearum # 10 797 19 820 825 815 53.0 0 MAEKIELQNRLREIPYNYTSFADKDIVTRLLGKEAWQLLNELRVSGKPGRSARMLYEVLG DVWVIQRNPYLQEDMLFNKKRRDLLIEALYHRINSIREQLPTLDEVSARKVAALMETALV MIEKFKGSFERSWDLRRLVLKKLKKHTRADNIRFDGFSRSSHVTDATDWRVEYPFVVIYP DSEDEVPGIVKALIDLDFVIIPRGGGTGYTGGAVPLHSRSAVINTEKLNRISDVEMRKLE GLDKEVATIEAGAGSVNKKVAEKAASEGWVFSVDPNSNYACTIGGNIAENAGGKKAVLWG TTVDNVYWYRMVDPDGNWLEVTRVNHNLGKIHLQEDVVFEAVWKQGNKSPEKAPIIRKKT FRLKGPKFRTPGLGKDVTNKYLGGLPGLQKEGCDGIITSARFILHKMPACTQTVCLEFYG AAGNAGPAIYQISQLFDSHPEGVMLAGLEHLDDRYLHAINYAPKSGRGIYPKMVIVGDII GNDDATISKYIEEVKKIAIAGNGDTFVAKTPEARHQYWAERSKTSAISKHTNAFKLNEDV VIPLDKIGEYTDACELFNICCSIRNKLEMLNAVATYLGGPIKLGKLAVSSEGYTEKELLA QKLPLAMALLRKVHDEWEYVLNHLHTPAKEALEALEQLGRRCESKLPENLDDLTLLDLVQ NHYLRISWKKEVLRELNDIYAGDAFEAVRSEIVKIHDRVLRGRVFIALHMHAGDGNVHTN IPVNSDNVEMIKTANEGVAYVMEVAKKLGGAISGEHGIGMTKISFVEPGQFDEFYRYLDE VDPHGRFNRGKLRPEANLSIAYTPSFNLLGHESLIMQKSEAKQIADEIKTCLRCGKCKPV CTTHVPNANLLYSPRNKVIATSLLLEAFLYEEQTRRGVSLKHFTEFGDVSDHCTICQKCQ KPCPVKIDFGHVTMLMRDMLHGQGKERFDPAKAAGLKFLELENPLAVRAMRKGMVEYGFK AQRIAADALKFTAAKSLKHPGFSTGRPTLREEVIHLVNRKLPEDKVHTTARRLLDIEEST YIPVIKNKEIASPKSGRESVFYFPGCGNEKLFSQVSIAVLGMLYDMGVQVVLPPGYRCCG HPQKGNGLSKKGDDIVTRNRVLFHRVANTLNYADISTVLVSCGTCLHQLREYNFESIFPG CRVMDIHDYLAEKGISVNGAYNTRYIYHDPCHTPLKEGVPIETVNRLIHPKDGSKVELSE RCCGESGTFAVSRPDIASQVRTAKELSLNQAAEKLKTDRFSGKIKVLTACPGCLQGMNRY SEATHTTAEFLVVEMMRSKYGDNWLYETVNKLKDGGIEKVLL >gi|301349847|gb|ADCQ01000003.1| GENE 145 154172 - 155737 1458 521 aa, chain + ## HITS:1 COG:RSc0449 KEGG:ns NR:ns ## COG: RSc0449 COG1171 # Protein_GI_number: 17545168 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Ralstonia solanacearum # 19 520 4 506 507 623 61.0 1e-178 MFKESSTTFHIPVDMLEQEYLRRILKAHVYDVAKETPLHQAKLLSARTENKILLKREDLQ SVFSFKLRGAYNKMANLTPEERARGVIAASAGNHAQGVALAASKLGCRAVIVMPITAPAL KINTVRRLGGEVVLFGESFSDAAAYAEELQAKEGLTPVPPFDDPDVIAGQGTVGMEIIRQ AQNANGNIDAIFVPVGGGGLLAGVAVYVKALYPNIKVFGVQTYDSDSMNQSLKNGERTLV PDVGLFSDGTAVKLVGKETYELCKNFVDGIVLVDTDEVCAAIKDVFQDTRGILEPAGALS VAGIKHYIKQNGCKNQTFVGVLSGANMNFDRLRFVAERAELGEHREVLFAVTIPEKKNSF RSLISLLGSRNITEFNYRISDAADAQIFVGIQTEHRSEAAEIKKLFEDQGLPALDITENE LAKTHLRYMVGGHSKLATDERVFRFEFPERPGALFKFLNSSGANWNISMFHYRNQGADYG RILAGLQVPEEDYGRFDEFLKNLGYSYVEETNNPAYKLFLG >gi|301349847|gb|ADCQ01000003.1| GENE 146 155824 - 156051 222 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302861030|gb|EFL84105.1| ## NR: gi|302861030|gb|EFL84105.1| hypothetical protein HMPREF0189_01468 [Burkholderiales bacterium 1_1_47] # 1 75 13 87 87 135 100.0 5e-31 MQGLPPEARAALNVMSQMQQRPPEDVLRDEIKNYIEGRLPRIDIEGAIKALQSRSYQAGY IIGSLRKFARNWNRE >gi|301349847|gb|ADCQ01000003.1| GENE 147 156176 - 156370 201 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858734|gb|EFL81831.1| ## NR: gi|302858734|gb|EFL81831.1| transposase, IS4 family [Burkholderiales bacterium 1_1_47] # 1 64 311 374 374 134 100.0 1e-30 MVYDGDCRVLDSLNNVMQTKFCGGYYFGEIAGKRRKLFEALGVPVPDAEPEKEQDYDDEE ETEF Prediction of potential genes in microbial genomes Time: Fri May 13 05:24:28 2011 Seq name: gi|301349846|gb|ADCQ01000004.1| Burkholderiales bacterium 1_1_47 cont1.4, whole genome shotgun sequence Length of sequence - 51518 bp Number of predicted genes - 50, with homology - 50 Number of transcription units - 18, operones - 10 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 205 187 ## gi|302858722|gb|EFL81825.1| transposase - Prom 230 - 289 8.8 - Term 232 - 288 13.3 2 2 Op 1 . - CDS 344 - 550 328 ## gi|302861033|gb|EFL84108.1| hypothetical protein HMPREF0189_01471 3 2 Op 2 . - CDS 555 - 1967 1281 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 4 2 Op 3 8/0.000 - CDS 1973 - 3130 968 ## COG0797 Lipoproteins 5 2 Op 4 19/0.000 - CDS 3158 - 4321 1099 ## COG0772 Bacterial cell division membrane protein 6 2 Op 5 3/0.000 - CDS 4318 - 6306 1637 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 7 2 Op 6 19/0.000 - CDS 6315 - 6845 425 ## COG2891 Cell shape-determining protein 8 2 Op 7 22/0.000 - CDS 6842 - 7756 787 ## COG1792 Cell shape-determining protein 9 2 Op 8 . - CDS 7775 - 8821 1262 ## COG1077 Actin-like ATPase involved in cell morphogenesis - Prom 8915 - 8974 3.8 + Prom 8757 - 8816 3.0 10 3 Op 1 31/0.000 + CDS 9000 - 9287 312 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 11 3 Op 2 21/0.000 + CDS 9289 - 10746 371 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 12 3 Op 3 . + CDS 10761 - 12209 1615 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) + Term 12226 - 12267 10.0 - Term 12217 - 12250 4.1 13 4 Tu 1 . - CDS 12262 - 12936 622 ## COG0461 Orotate phosphoribosyltransferase - Prom 12968 - 13027 6.0 + Prom 12871 - 12930 3.6 14 5 Op 1 . + CDS 13090 - 13878 580 ## COG0708 Exonuclease III 15 5 Op 2 8/0.000 + CDS 13875 - 14570 586 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 16 5 Op 3 . + CDS 14567 - 15970 896 ## COG0477 Permeases of the major facilitator superfamily 17 6 Op 1 . - CDS 15967 - 16626 637 ## Mpe_A3702 SecA-related metal-binding protein 18 6 Op 2 25/0.000 - CDS 16616 - 18424 1137 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 19 6 Op 3 9/0.000 - CDS 18427 - 18696 309 ## COG1925 Phosphotransferase system, HPr-related proteins 20 6 Op 4 . - CDS 18683 - 19090 395 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 19113 - 19172 3.5 + Prom 19144 - 19203 2.9 21 7 Tu 1 . + CDS 19223 - 19576 454 ## Tmz1t_0669 hypothetical protein + Term 19604 - 19643 1.7 - Term 19590 - 19633 11.1 22 8 Op 1 17/0.000 - CDS 19657 - 21138 1387 ## COG0168 Trk-type K+ transport systems, membrane components 23 8 Op 2 3/0.000 - CDS 21140 - 22552 1157 ## COG0569 K+ transport systems, NAD-binding component 24 8 Op 3 8/0.000 - CDS 22583 - 23296 662 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 25 8 Op 4 . - CDS 23345 - 25597 1546 ## COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation 26 8 Op 5 . - CDS 25598 - 26167 294 ## Reut_A3404 proline rich signal peptide protein 27 8 Op 6 20/0.000 - CDS 26167 - 27471 794 ## COG0144 tRNA and rRNA cytosine-C5-methylases 28 8 Op 7 . - CDS 27468 - 28442 961 ## COG0223 Methionyl-tRNA formyltransferase - Prom 28466 - 28525 3.1 + Prom 28451 - 28510 5.1 29 9 Tu 1 . + CDS 28533 - 29429 442 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 29468 - 29508 1.4 - Term 29158 - 29186 -1.0 30 10 Tu 1 . - CDS 29431 - 29958 614 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 29993 - 30052 5.8 + Prom 29977 - 30036 3.2 31 11 Tu 1 . + CDS 30147 - 32672 1962 ## COG0550 Topoisomerase IA + Term 32694 - 32745 11.0 - Term 32691 - 32721 1.0 32 12 Op 1 . - CDS 32731 - 34107 1028 ## COG1253 Hemolysins and related proteins containing CBS domains 33 12 Op 2 . - CDS 34180 - 34485 316 ## gi|302861064|gb|EFL84139.1| conserved hypothetical protein 34 12 Op 3 . - CDS 34496 - 35431 863 ## COG2214 DnaJ-class molecular chaperone - Prom 35594 - 35653 5.0 + Prom 35355 - 35414 3.7 35 13 Op 1 6/0.000 + CDS 35625 - 36647 1156 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 36 13 Op 2 6/0.000 + CDS 36741 - 37901 786 ## COG4597 ABC-type amino acid transport system, permease component 37 13 Op 3 . + CDS 37898 - 38998 909 ## COG0765 ABC-type amino acid transport system, permease component 38 13 Op 4 . + CDS 39003 - 39524 498 ## gi|302861069|gb|EFL84144.1| conserved hypothetical protein + Term 39541 - 39577 10.3 - Term 39528 - 39565 10.5 39 14 Tu 1 . - CDS 39593 - 40156 813 ## COG0450 Peroxiredoxin - Prom 40183 - 40242 3.9 + Prom 40316 - 40375 6.8 40 15 Tu 1 . + CDS 40401 - 41693 1265 ## COG2195 Di- and tripeptidases + Term 41716 - 41756 6.2 + Prom 41752 - 41811 3.7 41 16 Op 1 . + CDS 41833 - 43638 1398 ## COG0457 FOG: TPR repeat 42 16 Op 2 . + CDS 43625 - 44128 169 ## gi|302861073|gb|EFL84148.1| conserved hypothetical protein 43 16 Op 3 13/0.000 + CDS 44125 - 44976 245 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase + Term 45013 - 45081 30.4 + TRNA 44995 - 45070 73.7 # Gln TTG 0 0 + Prom 44997 - 45056 80.3 44 17 Op 1 9/0.000 + CDS 45135 - 46094 832 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 46103 - 46139 5.1 45 17 Op 2 . + CDS 46150 - 46803 574 ## PROTEIN SUPPORTED gi|91787188|ref|YP_548140.1| 50S ribosomal protein L25P + Term 46832 - 46867 7.4 + Prom 46807 - 46866 4.7 46 18 Op 1 . + CDS 46911 - 48671 1245 ## COG0513 Superfamily II DNA and RNA helicases 47 18 Op 2 . + CDS 48668 - 49273 283 ## COG0193 Peptidyl-tRNA hydrolase 48 18 Op 3 . + CDS 49230 - 49706 192 ## COG1683 Uncharacterized conserved protein 49 18 Op 4 1/0.222 + CDS 49709 - 50803 1188 ## COG0012 Predicted GTPase, probable translation factor 50 18 Op 5 . + CDS 50805 - 51185 220 ## COG1396 Predicted transcriptional regulators + Term 51187 - 51231 4.1 - 5S_RRNA 51324 - 51393 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349846|gb|ADCQ01000004.1| GENE 1 1 - 205 187 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858722|gb|EFL81825.1| ## NR: gi|302858722|gb|EFL81825.1| transposase [Burkholderiales bacterium 1_1_47] # 1 68 1 68 307 139 100.0 4e-32 MKTPQLPPLIIKKSPSAFYVYTYKNKWDPEKKRSYRASFKKVGTVTSGEKEGRIRWDDHF LAERPELR >gi|301349846|gb|ADCQ01000004.1| GENE 2 344 - 550 328 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302861033|gb|EFL84108.1| ## NR: gi|302861033|gb|EFL84108.1| hypothetical protein HMPREF0189_01471 [Burkholderiales bacterium 1_1_47] # 1 68 6 73 73 120 100.0 3e-26 MRRDVVTQIIVEYPSGCENFATRLEAERFINANLEEEEPVAVWVEEVNGKKKYDLHFAEE NGEIHIVD >gi|301349846|gb|ADCQ01000004.1| GENE 3 555 - 1967 1281 470 aa, chain - ## HITS:1 COG:ML1193 KEGG:ns NR:ns ## COG: ML1193 COG0624 # Protein_GI_number: 15827607 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Mycobacterium leprae # 92 451 80 424 442 140 30.0 6e-33 MLKKIYNEVTREWDTSVEEALKSFIRLPALSPDFDKKWEENGVLLKALEEAKAWAEKQGI KGLRCEIIKDDGFTPCLFIEVDATSDKKFERSVFFYGHLDKQPPNEGWDPDKSAWEPVIQ NGRLYGRGAVDDGYAFYTSLAAVKVLQTLEIPHPRCVGLFETCEESSSRHYESYLKEAEQ KLGDIGLVIALDSCCGDYDRLWVTSSLRGMLGGTIEVRTLNVGVHSGEASGIVPESFMIV RRLLDRIEDSRTGEIIPKVFQTKISEEIHKQNVGVAESLGDRIFAAYPWHGKTEPLTKDA CEALLNRSWRPELTVTGVDGMPSVENAGNVMRPFTTVKIGMRLPPDVDAEKASAALEEII TAEPPFNADVKYVPTVASNGWSAKASAQWISKAFEKASEAYWGNKPAYMGLGASIPLVKL FSEKWPHAQFMVSGALGPNSNAHGPNESLHIEYCKKQTASVAYLISQYEE >gi|301349846|gb|ADCQ01000004.1| GENE 4 1973 - 3130 968 385 aa, chain - ## HITS:1 COG:PA4000 KEGG:ns NR:ns ## COG: PA4000 COG0797 # Protein_GI_number: 15599195 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipoproteins # Organism: Pseudomonas aeruginosa # 7 179 13 196 342 161 50.0 2e-39 MNVRILGVCAAAVCVLLASGCGTQKNSGKYYDRDGPPKEWETFGMSRADAVPKVEKPIAS TNRPYTVMGKRYVPMTGDKPLTQVGYGSWYGKQFHGKKTSTGEIYNMYEMSAAHTTMELP SYARVTNLENGKSVIVRVNDRGPFLHSRVIDLSYAAATKLGYAGKGTARVKVERITRAQI ASGKWKKGSPLLTTVLAAIPKDKKETSSPVGERKDPGEALIEALATQSGNLMESPSPVTA DKVEIEKAAVPSSDRHLIPEGVYTVAGADSTTTLGTFENEIREEVIHSIREQASDEKQKL KGSGVVPQGNYAVQLGVFRSEANAIALKKRFIETLGDKIGSDVSIRSTNGLYKVVAGKSM TEQQAKSAVAIIRDALNIKAFTLKE >gi|301349846|gb|ADCQ01000004.1| GENE 5 3158 - 4321 1099 387 aa, chain - ## HITS:1 COG:RSc0063 KEGG:ns NR:ns ## COG: RSc0063 COG0772 # Protein_GI_number: 17544782 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Ralstonia solanacearum # 25 375 18 376 380 343 54.0 3e-94 MNAHTREPFHIRILKGLLGIIWSIDWPLMVIVLILSAWGFVALYSAGYSFPWRIDGQIRN LAAAGAAMMLFATMPLKWTRNLAVPAYIVGLVLLVATLLFGVNTKGATRWLDIGVIRIQP SEIMKLATPLLIAWYFQIRLTAQEGVLKWWDYLVAFVMLALPVALILKQPDLGTSILVLA SGFAVIFFAGLSWKFLLLLISGVLVALPIVWNSLYDYQRQRVLTLLDPSSDPLGAGFHTL QAIIAIGSGGMTGKGWMNGTQAHLDFIPERTSDFLFAVFSEEFGFFGDICLLGLYTLLIM RALYIASVANTVFERLLACAIATIFLIYSFVNMGMVSGILPVVGVPLPFMSYGGTALLIL GICCGLLMKISAQRRIKVSLYGDDYRS >gi|301349846|gb|ADCQ01000004.1| GENE 6 4318 - 6306 1637 662 aa, chain - ## HITS:1 COG:RSc0062 KEGG:ns NR:ns ## COG: RSc0062 COG0768 # Protein_GI_number: 17544781 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Ralstonia solanacearum # 2 610 3 626 801 644 55.0 0 MERRNLELEQKFRKQFTRRCWFFLFVTILLYLILASRFAYLQIFQYDELVTKAEANRKTE TAHPPRRGIIMDKNGEVLATNDPIYTLEITPAKTPNFNQTIKELQKVISISKGDIRRFNR LKDELPRLSPVPVKSGLTDEEVARFTAQSWRFPGVEVRSRMHRFYPAGKDAAHVVGYIGR ISQRDQTRLEESGRGNDYTGTLNIGKTGIELSYEDVLHGKPGFEQIEVRASGRPIRSLSM TQPQSGNNLVLTLDMGLQREIMKELGDRRGTVIAIEPATGDVLAFVSNPSFDPNLFVDGI DQETWDSLNQDEDKPLMNRALRGTYPIGSTFKPFMALAALEMKVRDPKRVINDNGHFQLG NHVFRDSTRGRGYGPVDMHRSIVVSSDVYYYSLAQDMGIDRIHDFMKPFGFGQITGIDLV GEARGILPSREWKQRRFKQRWAQGDTISIGIGQGYNAFTILQLAHAVATLANDGIVMKPH LVKKIINSKTGEEEIVAKDPVDVIPLKKENVNFIKRAMQDVTQKGTGRAIFAGAPYTVGG KTGTAQVLGIKQGETYNKNKIKERHRDHSLFIAFAPVDKPKIALAIMVENGGFGAAAAAP LARKVLDYYLIEQNKNKGVTEEAGKEKSQQTKARSTAAVKKAVKPADKPQAAASGTVKGN KE >gi|301349846|gb|ADCQ01000004.1| GENE 7 6315 - 6845 425 176 aa, chain - ## HITS:1 COG:RSc0061 KEGG:ns NR:ns ## COG: RSc0061 COG2891 # Protein_GI_number: 17544780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Ralstonia solanacearum # 31 160 19 148 170 71 29.0 8e-13 MSEFSKGFKSRRPNKSFYDPAFASGWWVYGTLILSWCLDLLPLSHLPYFPSFLVLTLVFW TIHQPQRIYYWLAFLFGLLTDADTGAVFGQHALTYCMVVFFTELMSVRLSWLSSIAQSIS LIPIFYIPAILLTIEAFCFGNGFGPWSVFAQGLLSVVFWPAWCWLLARRWVPNYGA >gi|301349846|gb|ADCQ01000004.1| GENE 8 6842 - 7756 787 304 aa, chain - ## HITS:1 COG:PA4480 KEGG:ns NR:ns ## COG: PA4480 COG1792 # Protein_GI_number: 15599676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Pseudomonas aeruginosa # 24 280 2 258 330 131 33.0 2e-30 MVGPSKHLKFNAPRASSFTSFGFFVAISVLMMVVDHQMQVMEPVRSGFAWVSDWIHNGVA SPARGVDFADSYLRSKSSLIAQNEELKKRLAESEMQRYRMSTLSEENRVLKEMLQQKTLY TAKTGMFEVRRALSDGFTQRYQIDGGSNDGLEVGMPVVTEAGLAGQLIHVAPNSSQVQLI QDKNQEVPVLFTTSHVRGIVRGSGDGTTLQSRDLPFSDKIKVGEKVVTSGLDGIYPKGIP VGVVTKVEPGDSGSYIDVTVSSPKSIGTSEYVLVLYVDTKVELPDLDEEEENAGDGQVRR KPKR >gi|301349846|gb|ADCQ01000004.1| GENE 9 7775 - 8821 1262 348 aa, chain - ## HITS:1 COG:RSc0059 KEGG:ns NR:ns ## COG: RSc0059 COG1077 # Protein_GI_number: 17544778 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Ralstonia solanacearum # 1 347 1 346 347 482 76.0 1e-136 MFGSIRNYFSNDLAIDLGTANTLIYCRGKGMVLNEPSVVAVRTDKSNSGKLDVRAVGQEA KNMLGRVPGNIDAIRPMKDGVIANFTVTEQMLKSFIKKVHTPSIFTPRPRIVICVPYGST QVERRAIKESAEAAGAKQVYLIEEPMAAALGAGLPVSEAAGSMVIDIGGGTTEVGVISLG GIVYACSVRVGGDKFDQAIIDYIRRNYGMQIGEPTAERIKKEIGSAFVSSEVREFEVKGR NLAEGVPRSFTISSNEVLEALTEPLNQVVGAVKKALEQTPPELGADIAVRGLMLTGGGAL LKDLDRLLMEETGLPVVVADDPLSCVVRGCGIALEGIGKIEDSIFCFG >gi|301349846|gb|ADCQ01000004.1| GENE 10 9000 - 9287 312 95 aa, chain + ## HITS:1 COG:RSc0058 KEGG:ns NR:ns ## COG: RSc0058 COG0721 # Protein_GI_number: 17544777 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Ralstonia solanacearum # 1 95 1 99 99 89 50.0 2e-18 MSLTINDVRRISDLARIDLSEESAKKLMGELNDILSMVEQIQSVDTTGVAPMPHPFGGVQ RLRPDDVTEHNRREENMQNAPDEMDGLFLVPKVIE >gi|301349846|gb|ADCQ01000004.1| GENE 11 9289 - 10746 371 485 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 1 472 1 452 468 147 29 1e-34 MKELTHASVAELSALLSKKEVSAKEIAQAYLDKIEDKKSLNAFLDVRPEVTLKEAEAADR KIAEGTASPLTGVPIAHKDIFVTRNWASTAASKMLENYMSPFDATVVERIQEAGLVCLGK TNCDEFAMGSTTANSAYGKTFNPWNEHVVPGGSSGGSASCVAARLTPAATATDTGGSIRQ PAAFCGVTGIKPTYGRPSRWGMIAFASSLDTAGVIAQTAEDCALVLSQMIGFDKRDSTSI ELPPEDLTIGLNDGVKGLRIGVPRAWIDKAAPALRDSIYAALKVYEDLGAVLVDIKLEKA DLGVPVYYIIAPAEASSNLGRFDGVRYGHRAQNYTDLLDMIKKSRDEGFGPEPKRRILIG TYVLSHGYYDAYYIKAQQVRRLIAEEFDHIFAENCDVIAAPVSTDAAFRFDDKSDPLSLY LSDLYTVPGSLAGLPSMSVPCGMSPDNLPFGLQLIAPKCKEARLLRTAHAYQNVTDWHKA VPAGY >gi|301349846|gb|ADCQ01000004.1| GENE 12 10761 - 12209 1615 482 aa, chain + ## HITS:1 COG:RSc0054 KEGG:ns NR:ns ## COG: RSc0054 COG0064 # Protein_GI_number: 17544773 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Ralstonia solanacearum # 1 481 1 486 488 582 65.0 1e-166 MEWEVVIGLETHVQLSTKSKIFSGASAAFGAEPNTHACPIDLALPGCLPVLNREAVEKAI RFGLAINAKVANRSVFDRKHYFYPDLPKAYQISQFEHPVVIGGELTIQVENPDGTTYAKT VHLTRAHLEEDAGKSVHGIVHGKTGIDLNRAGTPLLEIVSEPEMRSSAEAVAYARALHEL VTWIGVSDGDMQKGNFRCDANVSVRPKGQKEFGTRCEIKNLNSFKFLQAAIDYEVRRQIE LISEGGKVVQATRLYDPDNDETREMRTKEDSMDYRYFPDPDLQPLEISDEWIDEVRATMP ELPGAALNRLIQEYGINEADAIQLTSHRPLTVYFETAAANVKDKKAVANWIRGEVLAKLN AAELTIEESPVSAEQVGQILNRMSDGTLNQKGARTVFSAIWEKKGDNVDALIETLGLKQI SDTGAIEAAIDAVLAANPKMVAEFKSGKEKAFNALVGQTMRATKGKANPAQVNEILRAKL AQ >gi|301349846|gb|ADCQ01000004.1| GENE 13 12262 - 12936 622 224 aa, chain - ## HITS:1 COG:RSc0139 KEGG:ns NR:ns ## COG: RSc0139 COG0461 # Protein_GI_number: 17544858 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Ralstonia solanacearum # 2 222 16 232 237 243 56.0 2e-64 MSSIQHKFIEFCIESKVLRFGEFKTKAGRLSPYFFNAGLFNTGAMLSKLADFYARTLIKA MEEGRIECDMIFGPAYKGITLAAAVAMRMAELGYDLPFAYNRKEVKDHGEGGNTVGAPIK GHVVIIDDVISAGTSVGESVKIIEACGAHPSGVLLALDRMECAGTAEKVADRSAVEDVKA RYAMPVVAIADLSDLMSFLKETKDPELFAYQEAISEYRRKYGSK >gi|301349846|gb|ADCQ01000004.1| GENE 14 13090 - 13878 580 262 aa, chain + ## HITS:1 COG:RSc0140 KEGG:ns NR:ns ## COG: RSc0140 COG0708 # Protein_GI_number: 17544859 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Ralstonia solanacearum # 5 262 1 260 261 321 59.0 8e-88 MDRQVLKIITINTNGIRSAVNKGFHLWLAKQDADIVCIQELKAQPDEVPDEINLDGAFYR YVHCAEKKGYSGCAILTRKKPDEVIIGFGNEEFDREGRYVEARFNNLIVVSIYFPSGSSS EERQQAKFRFLDVIKGRLDELLRDGRDVVLCGDFNIAHKEIDIKNWKGNLKNSGFLPEER QWITDRLREGWQDVFRRLDPRPDRFTWWSNRGRARINNVGWRIDYQFSTPAIASTAKETD IYRDERFSDHAPLTVVYDFNLQ >gi|301349846|gb|ADCQ01000004.1| GENE 15 13875 - 14570 586 231 aa, chain + ## HITS:1 COG:RSc0674 KEGG:ns NR:ns ## COG: RSc0674 COG1187 # Protein_GI_number: 17545393 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Ralstonia solanacearum # 5 225 12 232 252 223 50.0 3e-58 MIAEQILFSQGFGTRHECTGLIVQGRFRVNGTAVTDPDEDIPTEDLTFEVDGVQWPFFEK AIILLNKPEHYECSLKPIHHPSVLSLLPPPLRVRKVQPVGRLDEDTTGLLLLTDDGKLIH RLTHPKKHVTKIYRVTLKHPVTEKQIAQLLKGVQLADSPDIVKAVSCDKVSELVIDLGIT QGKYHQVKRMMAAVSNRVVALERIRFGNLSLPEDLKPGEWTWGKSAQEIIG >gi|301349846|gb|ADCQ01000004.1| GENE 16 14567 - 15970 896 467 aa, chain + ## HITS:1 COG:RC0535 KEGG:ns NR:ns ## COG: RC0535 COG0477 # Protein_GI_number: 15892458 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Rickettsia conorii # 11 452 7 405 414 212 31.0 1e-54 MIRSSKLRSRFSDFKIYLKPVCLRMFFLGFSAGLPLLLVLGTLGFWLREAGIDLKTIGFL SWVGLVYGCKWLWAPLVDNVKLPWLSEHLGQRRAWLALSQVMLIISLAGMAFSNPQTHMP QIVVFALLTAFCSATQDISLDAYRIESASADLQGALAATYQTGYRLAMIWAGAGAFALAA FFQSAPSGAYDQTGWTWAYLIMAASISVGLATTLLSPPPNASDEKSKLRHLEEMRHHVHA FILRHPSLPRPIAKVIGWFGFVCVRPIADFFYRYRWHALAILLLIATYRISDVVMGVMSN PFYRDMGFTKEEVAAVSKIFGVVMTLVGTFIGGIVVLKIGILKTLFIGALLSAGTNLLFS ALAGIGHSLPFLVFTVSADNLSGGLASAAFIAYLSGLTNVQYSATQYAVFSSIMLILPKF LAGFSGVLVESLGYSNFFILTAALGVPVLVLIPIIGYLSRHRAPDKN >gi|301349846|gb|ADCQ01000004.1| GENE 17 15967 - 16626 637 219 aa, chain - ## HITS:1 COG:no KEGG:Mpe_A3702 NR:ns ## KEGG: Mpe_A3702 # Name: not_defined # Def: SecA-related metal-binding protein # Organism: M.petroleiphilum # Pathway: not_defined # 2 206 4 220 254 90 33.0 5e-17 MSDKSNAVTDDEFVEADELLASIPVEAEAMDLAEADGFMTAVQLLPKTPETKDWLPHILS TIGAKDAGTGSAASDKRLRALLLKRFHQIGDQLTQAVPLDPVYFEAEDEKGRPLTGKAAI EALEPFALGFLEAAQTWPGILDTNSRAVARSLHGVLRHLPEEALGDFAQVKTILDKEAPL EDLPSALSDMVSCLAEIAHETKGYDLPELNEPEEGEEKA >gi|301349846|gb|ADCQ01000004.1| GENE 18 16616 - 18424 1137 602 aa, chain - ## HITS:1 COG:NMA0392 KEGG:ns NR:ns ## COG: NMA0392 COG1080 # Protein_GI_number: 15793400 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Neisseria meningitidis Z2491 # 12 599 5 583 591 381 36.0 1e-105 MSEKLVSQRQELRGVGVSSGIGFGHARVMQTSSLQVPRYSVTAEDVDKEIGRLRKSVSSV SRELDQMIRRSPKKAPKEVKTFLEVFKLLVNDSTMFDDVSDRIQTQQINVEWALQKHLED MLKLFDSLTDAYLAERSDDIVHVIRRLQEELTGERRKIQEKVRNAQSEVILVTNDLSIAD VIWLTEYEELDLVGIVTEKGGPTSHTALLSQTLFIPAVVGVAGALSVIKNNDRIFVDSNS GQIICNPTASEIKEIERNVKAQEKKYSQLYRARRRVAETKDKFRVTLKANVAMVSGLDEI LHLGAQGVGLFRSEYLFMGRDNLPEEREQMESYRELIDTMAGRPVTIRTIDVGGDKLLSA EARKRNYFSSAEKEDNPALGLRAIRFTLANPNLFITQIRAILRAASGADVRIMLPMISSL QEIREAKRYIELAKTQLREEKLEFNEFVPVGIMIELPAAVICAEELLAEADFASLGTNDL IQYTLGVDRGNPSVAPLYDECHPAVLRLIRAAVKAAQKQNKPISICGEMGGRREMVPFFL GLGINELSMVPMQIPIVKEMIRSLKRSSCQRLTLKLVKSRDSGEVRKLLEQFTEKGVEEN VG >gi|301349846|gb|ADCQ01000004.1| GENE 19 18427 - 18696 309 89 aa, chain - ## HITS:1 COG:XF1403 KEGG:ns NR:ns ## COG: XF1403 COG1925 # Protein_GI_number: 15838004 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Xylella fastidiosa 9a5c # 5 87 11 93 95 83 55.0 7e-17 MKTIEVEVINRLGLHARPAAKLTQKANEFLSEIKIDKDGRVVNGKSIMGVMLLAASKGTV LKISADGTDEESALQQLKELFDTKFGEQD >gi|301349846|gb|ADCQ01000004.1| GENE 20 18683 - 19090 395 135 aa, chain - ## HITS:1 COG:RSc0346 KEGG:ns NR:ns ## COG: RSc0346 COG2893 # Protein_GI_number: 17545065 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Ralstonia solanacearum # 7 117 21 133 169 57 28.0 9e-09 MEKLPKGIILAAHKPIASAMLKAATQIMGPIDHCAAADIDSDAKESDQFEHLKKVWDSVQ TEEMIILLDIEGATPCNVLKKYTSGKRCMLVSPLSFPLFFKMLTYRSLSFEELRAKAQEI RPVICIPGECTSENH >gi|301349846|gb|ADCQ01000004.1| GENE 21 19223 - 19576 454 117 aa, chain + ## HITS:1 COG:no KEGG:Tmz1t_0669 NR:ns ## KEGG: Tmz1t_0669 # Name: not_defined # Def: hypothetical protein # Organism: Thauera # Pathway: not_defined # 3 117 2 115 115 77 40.0 1e-13 MAIVTFKSNAAGEIYMFRETAEKIFKVIGKPLGIRGVLTPEELPAAIAALKTEMEKEKEY LKAVREREDKLFKEGKDLDEEKKPSIEQPVYFTQRAYPLLEMFELSLKDDTPVVWGV >gi|301349846|gb|ADCQ01000004.1| GENE 22 19657 - 21138 1387 493 aa, chain - ## HITS:1 COG:NMA0859 KEGG:ns NR:ns ## COG: NMA0859 COG0168 # Protein_GI_number: 15793829 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Neisseria meningitidis Z2491 # 12 492 4 484 485 339 40.0 8e-93 MQLLPPVLRLMLLPVLNVLGPIIIGFSLSMLIPLALSLWKKDGASAGFEIAFCITFFTGL LMWLLTRRYKRELIPRDGFLLVTMAWVLLALAATIPLYVNIEGISFVHAFFEATSGITTT CGTILSGLDRLPLSVNFWRCFLAWMGGIGILVMAVAVLPLLGVGGSQIFRAESSGPMKEG RLTPRIADTAKAFYNIYLAISVACAVCYHFAGMDWDDAIMHTFTTVSLGGYSSHDAGFAY WPGRAVDWVCVVFLLIGGINFSMHFIAWRKLSLKVYLKDVETCGWIGTAALISIFASFML VYSKTYTNVYDAIYYGVTNTVFVISTGGFANTNYGEWPLVVQLMILFGSCFATCAGSTGG GFKMIRAIALVKQGNLEFKRILHPRMVRPLIIGNKVIDKQIIFSVMAFLMLYTVIALIST IVFLLSGLDGLTSFSAALACLNNLGPALGSLGPSYNFTSLSDFQVLFCCFLMVIGRLELF TVLVLFTRGFWRA >gi|301349846|gb|ADCQ01000004.1| GENE 23 21140 - 22552 1157 470 aa, chain - ## HITS:1 COG:PA0016 KEGG:ns NR:ns ## COG: PA0016 COG0569 # Protein_GI_number: 15595214 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Pseudomonas aeruginosa # 1 470 1 457 457 369 43.0 1e-102 MRILIIGAGKVGSSVAGNLVSESNDITIVDTNKAKIAEIQSNYDLQGIVGDATSPSVLAD AGAVDADMIIAVTANDETNLAVTLIAEQLFNVPSRIARVRNDELREYPALLSTSGFRATS VIWPEEAITNYIVQLITYPEALQVIEFSDGDVVLMSVKIVSSSKMCGRPVSALQDELPRV KVQIVSIYRQKYRLDDIDGKTVLEAGDEIFFLTTKACAHAVVKTFRVKTRRSDRVMIVGG GSLGLQLAKALDQVETVSGDAYNVKIIESDLSRCQFLSQNLSSSVLVLHGDMTDESLFVD EGIANTDLFVAVSNDDEDNIMSCLLAKKLGAHRAITLINRTDYIDLVEGTSIDIAFSPTE ATLSDLLRHIRQGDVLSAHTLRRGGAEVMEIVAHGSAKNSKVIGRTVDKIAMPQGTAIGC ILRTVSGVQEVFMANEVPEVLDGDQVIVFMGNKRQISEVEKLFAPSVGFF >gi|301349846|gb|ADCQ01000004.1| GENE 24 22583 - 23296 662 237 aa, chain - ## HITS:1 COG:RSc0078 KEGG:ns NR:ns ## COG: RSc0078 COG2204 # Protein_GI_number: 17544797 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Ralstonia solanacearum # 1 231 1 232 239 219 53.0 5e-57 MAVILVVDDEIGIRELLSEILSDEGYGVLLAENASAARSAMTQHPDLVLLDIWMPDNDGV SLLKEWNATGQLNVPVIMMSGHATLDTAVEATKFGAVDFLEKPIALSRLISSVKEALAKS PKEPKIGAAARPQYTRAEPAPIRTGVQAPIPAAPAPVQSQDKSGSAPVSKLLDQVDFCAP LREARDQFERIYFLNLLKRENNSITRVASFAGLERTHLYRKLKQLGIEVGKIGKAKE >gi|301349846|gb|ADCQ01000004.1| GENE 25 23345 - 25597 1546 750 aa, chain - ## HITS:1 COG:RSc0077 KEGG:ns NR:ns ## COG: RSc0077 COG5000 # Protein_GI_number: 17544796 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation # Organism: Ralstonia solanacearum # 12 742 19 810 811 472 37.0 1e-132 MSKYFRLGLIAVIGVSCVLLFLLVLASQNSTFFEKYYTLLLWLNTIIALVFLGLVCVLLY RLYRRAQKKKYGVKILSKFALALGLTGVVPGILIFATSVQFLHTSVESWFDVRVERALDS GLTLGREVVENFQSSLRQKARTIANEISETPPANWMTVLDAARERQGLQEAVLVNSAGNF ITVSASSFRSLVPSVPTNRVLQTVRTRGFWQQIDDEVGGMQKARVIVPVPSVESIASFAY RTEQPDYLKGRSSVLQAAGSETVFLEVVDNVPPSLSTNAETLMNGYRDYQEMVLARAGLN NIYLISLTLVLLLSMFGAIALSVIMANRISQPLMMLLEGTRKVAEGKYDLIPEVKADDEV GELARSFNRMTEQLAQTQADLVRRGAELEQAKSYLERILAKMSSGVIVLNNDKKIISANS SASRILGIPLTDRLGSEFAQAIPGFASEVVEKLMAQTDERNDITLQCEYQRPENAVTKQN LFARATRLPIGDAQGYLIVFDDVTALVSAQRTEAWGEVARRLAHEIKNPLTPIQLAAERV EMKIGAKLEGRDKEILERATKTIVNQVTAMKQMVNDFRLYAKIGAPHYDKLDLKAFVEEV VKFYQAAGVHIDLFLQPGIPPIEADQNQLRQVFHNLLSNSMEAVPDKDKLVVSIRASVVT DEAGDVEGVELDVSDNGPGFTDQILEHAFEPYVTTKSSGTGLGLATIKKIAEEHGAMAAA ENRKDADGNVCGARLIFVFHRLWHEQSRPN >gi|301349846|gb|ADCQ01000004.1| GENE 26 25598 - 26167 294 189 aa, chain - ## HITS:1 COG:no KEGG:Reut_A3404 NR:ns ## KEGG: Reut_A3404 # Name: not_defined # Def: proline rich signal peptide protein # Organism: R.eutropha # Pathway: not_defined # 20 178 52 208 291 129 40.0 7e-29 MSLKKLLAITLLAMSTSLSALASDVVVPVDPVIEGQEVPAKGLYFSSSFEFELSSEVEDV LQRGITLYFVIEVEVEKKRWYWFDRSICGIKETIRLSFNPLTRSYRVAIGGMTQSFSSLE GALRFIKTINNLYVGSYRNLNPEDYEARARFYLDTSKLPRPFQVTLKKDDGWNLNSGWFD AEIKGAGEK >gi|301349846|gb|ADCQ01000004.1| GENE 27 26167 - 27471 794 434 aa, chain - ## HITS:1 COG:RSc0075 KEGG:ns NR:ns ## COG: RSc0075 COG0144 # Protein_GI_number: 17544794 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Ralstonia solanacearum # 40 433 44 439 441 291 46.0 2e-78 MSSAALAVTLTQTIPLWIGVKKGLSIEKVLEGLPKDSENRSACQSVLYTAVRQRALLQKL SSDLISRAPADDVLALIELALGLLSEGKEKPFTVVNEAVAAAKHSRKMVKAANFVNAILR RFGREKTELLVKAEKQPTVRFNAPDWWIRRYEAVFGEQTPEIFALQQKHPPMTLRVNTGK TSVEEAQAKLEKAGIPAERVGKFGLILLSPRPVKDVPGFLEGEVSVQDAGSQLAAELLDA KEGMRVLDACAAPGGKTAHSLELADVDMTALEIDPKRASRITENLDRLGLKAKVTVADAG DPKKWWDGRPFERILLDAPCTASGIVRRHPDIPWSRKPEDIAKLARTQGKLLETMWPLLA NNGRILYAVCSVFPEEGPRGIEAFCARHPDAKLIPIGPEGENLLSLSPAEGPETPGSVWP ATHDGFFYALLEKI >gi|301349846|gb|ADCQ01000004.1| GENE 28 27468 - 28442 961 324 aa, chain - ## HITS:1 COG:PA0018 KEGG:ns NR:ns ## COG: PA0018 COG0223 # Protein_GI_number: 15595216 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Pseudomonas aeruginosa # 1 323 5 312 314 256 47.0 4e-68 MRVIFAGTPEFAAKALEALIQSEHEVVMVLSQPDRPAGRGRKLKESAVKALAKQHNIPVY TPLSLRVEKGGEETAEVLTKMQEAKADVLVVAAYGLIVPQFVLDIPSGVLPQKFPTLKAV NIHGSLLPEWRGAAPIARAIERGDKETGITLMQMDAGLDTGPMLMKRSVEITPEDTAGDL TETLSRLGAEMLIEYLRNPEAYPPISQPEGATYASKLSKAEGKIDWTASADKIADKVRAF NPVPGCFCACGDEVLKIWMAFAEPGKKTGETPGTVIESSAKGILVACGDSTVLRITRLQR PGGKQLDVRDFIAGHAFSKGEVLK >gi|301349846|gb|ADCQ01000004.1| GENE 29 28533 - 29429 442 298 aa, chain + ## HITS:1 COG:CAP0097 KEGG:ns NR:ns ## COG: CAP0097 COG0596 # Protein_GI_number: 15004800 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Clostridium acetobutylicum # 4 293 2 290 299 171 37.0 2e-42 MPFAHLKTGRFHYEVFGDKQLPAVLLIMGLGMPAAGWPRSFISMLLEKSLRVITVDNRDA GLSEHFSHLKTSISVPAAIGRTLLRLPVQAPYLLEDMALDLVQLLDELKLQRAHVVGASM GGMIGQTLASIRPSRVASLTSIMSASGNPRTGFGKLRAIYSILMHSSDLSTEEGREKHLE RVFMTLKSPSYEYTAQEKHELLHEMSRYEIDQTAGERQLLAILASGDRSSDIARITAPTL VIHGEDDPLLPLAAGKEVADLIPKSEFLALPRMGHDLPPIHFETITRAIASHVWQAEA >gi|301349846|gb|ADCQ01000004.1| GENE 30 29431 - 29958 614 175 aa, chain - ## HITS:1 COG:RSc0070 KEGG:ns NR:ns ## COG: RSc0070 COG0242 # Protein_GI_number: 17544789 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Ralstonia solanacearum # 1 169 1 169 169 199 60.0 2e-51 MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV IDITEEKNDLKVLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGNFF ELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKMRLEEERAAKEEA >gi|301349846|gb|ADCQ01000004.1| GENE 31 30147 - 32672 1962 841 aa, chain + ## HITS:1 COG:RSc0066 KEGG:ns NR:ns ## COG: RSc0066 COG0550 # Protein_GI_number: 17544785 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Ralstonia solanacearum # 1 818 1 821 877 961 61.0 0 MGKTLVIAEKPSVAGDIARAIGGLKKVGDHYEGDSYIVASAVGHLLELKEPAEYEVKRGK WSFANLPVIPSHFDLAPIKKSETKLNGLKKLLKSKEVDKVINACDAGREGELIFRYIMEA TKNKKPIYRLWLQSMTKGAILDAFKHLRTDAQMQPLADAAKSRSEADWLVGINGTRAMTA FNSKDGGFFLTTVGRVQTPTLALVVNREEKIRSFAPRNYWEVHADFKVDAGVYEGKYFDP DFKKSSDPDLKAERLWAAEDAQKIADAVRGKKGTATETSKPSTSSCPALYDLTTLQREAN SRFGFSAKTTLSIAQALYEKHKLLTYPRTDARALPEDYLPTVKEILSVVAQTSSLGKFAQ KALKDNYVVFTKKIFNNAKISDHFAIIPTGQEPKSVLSEVEQKIYDLVTKRFIAVFYPPA QFLNTTRTTVVEDYHFVSEGKVMQHPGWLEVYGRTSEDSGSELVPVAKGETPLTVKSDAL GLATKPPARYTEASLLSAMENAGKTVEEAELRDAMSEKGIGTPATRAAIIEGLIAQSYLI REGRELIPTAKASQLLTLLKGLNIETLSEAELTGEWEYKLSQIEKGQLSRKDFMKEIGEL TCSIVDRAKSYGADTVPLSNPATLKAPCPKCGGKIVENYRRFACTSCDYSIPKHPGGRTF APEEVDELLTKGQIGPLEGFISKMGRPFSAVLKLGPAPDYKIDFDFGEKPERETVDVEEL RKTEPVGKCPVCGKNVYETENAYVCEDHIDPNAKKKCTFRSSKVILQQPISREEMSKLLS TGSTDLLHDFVSNRTKRKFSAYLVTDSKGKIGFKFEEKTGDKKAAAGARKSASKTVRKAE A >gi|301349846|gb|ADCQ01000004.1| GENE 32 32731 - 34107 1028 458 aa, chain - ## HITS:1 COG:STM4407 KEGG:ns NR:ns ## COG: STM4407 COG1253 # Protein_GI_number: 16767653 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Salmonella typhimurium LT2 # 10 444 8 443 447 463 52.0 1e-130 MDLSLKLLSIFALIVAAAYFAISEISLAGSRRVRLTQMAENGDKRAQEVINLQEKPGPFF SVIQIGINAVAILGGIVGEAAFTDVFAGLFKWFVPAQYLETTSFLCSFLLITMLFIIFAD LLPKRIGLTNPEKISVRLIGSMQVLIKVLKPFVWLLTVISNALMKLFGLPTQNKNKITSE DIVATVDAGAAAGLIAPSEQAAIENVMDLESRLVPSAMTAREYVVYFTLDESYESIAKKI ASSPHNKFPVCDRDIDHVIGYVDSKDILRRVIEGKTFSLKDQNCISSLPAVPDSLTLSEV LDLFKTQRSDFAVVLNEYALTVGVITLNDIMSTVMGEFVLTPDEAQIVQRSDGSWLIDGA TPIDDVERVFDFGQLPEDETYETLAGFMMYMLRKIPKLTDHIEYGGYRFEVIDVERHRID QILVTKIGSKDEDKKPEPSEQSTEPGKEAPASEDEQDK >gi|301349846|gb|ADCQ01000004.1| GENE 33 34180 - 34485 316 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302861064|gb|EFL84139.1| ## NR: gi|302861064|gb|EFL84139.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 101 1 101 101 191 100.0 1e-47 MSQMIVTEVQTTFSPEELQEVSGLPAEIFNEIKDLGALDEFLDHGRYVSRSFLVIRKAAR LRRTFDLQSDALALLIHYMAEADALKDQIRHYQLGNINPYL >gi|301349846|gb|ADCQ01000004.1| GENE 34 34496 - 35431 863 311 aa, chain - ## HITS:1 COG:STM1112 KEGG:ns NR:ns ## COG: STM1112 COG2214 # Protein_GI_number: 16764470 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Salmonella typhimurium LT2 # 1 309 1 301 306 222 41.0 6e-58 MEYKDYYKILGVDRSASEADIKKAFRKLAHKYHPDVSKEKDAEAKFKDVNEAYQTLSDPE KKAAYDQLGQRREGSSFEPPPGWGGFGGGASHGFEGFDFGGGGFDFADLFSHMGGGARAA RPQAGEDLNAEVQITPEQAFNGTTVSISLREPEETTDGRVRHVTKTLEIKVPAGTIDGQK MRVTGKGGPGYNGGSNGNLYITINIIEEGRFKVEGRDVYQTVPLADFEAVLGAEVVVPTL SGGKISVKIPAGAKAGQKIRIGGKGFPNKKGTAGDMYLLISIVVPPAPSDEVKELYQKIA EASKFNPRENL >gi|301349846|gb|ADCQ01000004.1| GENE 35 35625 - 36647 1156 340 aa, chain + ## HITS:1 COG:VC1362 KEGG:ns NR:ns ## COG: VC1362 COG0834 # Protein_GI_number: 15641374 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Vibrio cholerae # 27 340 30 342 342 385 58.0 1e-107 MNQTILAGALSAVSLSLAAPAFAGPVLDKVKANDVVVCGVNTAAPGFSNADSKGNWTGLD VDYCRALAAAVLADANKVKFVPLNSPQRFSALQAGEVDVLARNTTWNLTRDASLGAVFVG TNYYDGQGFLVPKKLNVKSAKQLNGATICVQSGTSSEPSVADYFKSHGMKYKAVLFDTTE ATQGAFLSGRCQVYTTDMSDLAGARTKAANPDDYVILPEVISKEPLGPSVRRGDNEWFQI ARWVLNAFIEAEEKGITQANADELRKTSTDPNVKRLLGSGEDMGKLLGLDKDWSYRIVKQ VGNYGESFERNLGPKTPLALPRGINNQWTNGGILYAPPVR >gi|301349846|gb|ADCQ01000004.1| GENE 36 36741 - 37901 786 386 aa, chain + ## HITS:1 COG:VC1361 KEGG:ns NR:ns ## COG: VC1361 COG4597 # Protein_GI_number: 15641373 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Vibrio cholerae # 20 381 28 396 401 230 41.0 4e-60 MNHPHGDAAWHRREASRKRKAFIWQSAILVVLTIIFGSFIFNISANLAARNIHSGFAFLH EQAGFEIGESLISFSSTEAYFKAFLVGLLNTIKVSVVSIITATVLGVIIGLMRLSKHPLL KFLGAAHVEFYRNIPLIVQLLLIYLIITELLPDSMEAVNFGSWGLLSKAGLQFAVPASNS TACTWSFVAAGLAFFLTRPLFLKIYTGLISTVFSLSTALVVGGAAWLCFGIFGGWSKPEL QGFAIEGGASLSPEFLALWIGLTFFTSSSIAEIIRAGVLAVPRGQWHAAEALGMTRLEAI SYVIFPQALKLAIPPLASQYMNLTKNSSLAVVVGYPDLVSIGNSTINLNGQALEVIVIIM SVYLFLNLVISVVMNSINRIVIRGSR >gi|301349846|gb|ADCQ01000004.1| GENE 37 37898 - 38998 909 366 aa, chain + ## HITS:1 COG:AGc2908 KEGG:ns NR:ns ## COG: AGc2908 COG0765 # Protein_GI_number: 15888896 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 351 34 379 385 256 43.0 4e-68 MKQPQNAFPANLWRSFFYSPVASVVTIGLFLLIGAAGWYAWKWGVADAIFRADFKACMNN HDGACWGFVAEKWRLILFGRFPYDEQWRAAAATGGVILMLVISAFPQLWNRTGCKILTAG WILALGAFFVLMLGGCFGLSKIDPDYWGGLPLTIILTLFGMTASTPLGILLALGRRSKMS AIRMLCIGYIELVRGVPLITVLFVASFIFPLILPPGFRIDAFWRIVIGIVLFQTAYMAET IRGGLQTIPKGQYEAAASLGLSKYQIYTSVILPQALVTVIPAFVNNLLSTFMDTSLVTIV SMYDLTGSLRLALGDPNWRNFFLEGYLFIAIIYFVFSLIMSRYSIWLEKRIQRSKEQAAL SAKKEH >gi|301349846|gb|ADCQ01000004.1| GENE 38 39003 - 39524 498 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302861069|gb|EFL84144.1| ## NR: gi|302861069|gb|EFL84144.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 173 1 173 173 314 100.0 1e-84 MALKEVFQHSIALSDIDPELTGVTRKQVWDALKTAYLNRHEYLDFFLDSKPLKSETVGEK EKIDLEIKLSGQNGGQTIVEHHELDPEKSITTTIDATAAGAESQLRIVLEEASEGYALSF TYSQNLDETQPEPSPEEKEYRQFLYRAWAWKDGEVCKAIAAQLDKDTSVASVQ >gi|301349846|gb|ADCQ01000004.1| GENE 39 39593 - 40156 813 187 aa, chain - ## HITS:1 COG:CC2918 KEGG:ns NR:ns ## COG: CC2918 COG0450 # Protein_GI_number: 16127148 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Caulobacter vibrioides # 1 187 1 187 187 260 62.0 1e-69 MSLVGTQLQSFSVEAFQGFEFKKITDADLKGKWSVVFFYPADFTFVCPTELEDLADNYAE FKKIGCEIYSVSTDTHFTHKAWHDSSEAIKKVEFPMLGDPTGQMTRNFGVMIESAGLAQR GTFVINPEGRIVICEIHDEGIGRDAKELLRKVQAAQFVEANPGMVCPAKWKPGQKTLKPS IDLVGKI >gi|301349846|gb|ADCQ01000004.1| GENE 40 40401 - 41693 1265 430 aa, chain + ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 29 417 19 412 412 311 44.0 2e-84 MSGPLPKEAPVLPPLPESVNETFKILENNPVVKDALKQIKEEEQLTMADQIALTEIEAPP FHEEVRAAYFAERLRELGLTNVRIDKEGNVIGIRPGKGNGPRLVLGAHLDTVFPAGTNVK VRQEGTKYYAPGISDDARGLAVVLEVLRTLQNSNIRTEGDLLFIGSVGEEGNGDLRGGKY LFSSKEEHIDGFISVDSACVAQLLHGSTGSRRFRVTYEGPGGHSWAAFGIPSATHALGRA IAKIADLNVPETPKTTFTVGTVVGGSTVNSIAAKATMEIDTRSINNDELNKIVDQVLPLL TEACEEENKHWNAAEENKIKVIIDPIGHRPAGDQPDSSPVLLAARGAMKAVGIELRSYDC ASTDQNVPLSLGIPATTIGGGGSEGHNHSLTEWYDSTDSYLGPQLALMTVLSLVGLEGET KPLLPKRSAS >gi|301349846|gb|ADCQ01000004.1| GENE 41 41833 - 43638 1398 601 aa, chain + ## HITS:1 COG:RSc0398 KEGG:ns NR:ns ## COG: RSc0398 COG0457 # Protein_GI_number: 17545117 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Ralstonia solanacearum # 32 597 46 633 642 176 26.0 2e-43 MVFGVSGKLKFILVSALFVALGVPLAGSRTIAAEHSAATPPVSASAKNTTEEAAVKESEG AASDPSIPEVKLTSRILFQLIASEIALQRGQAGAAYQTYLTLAEETGDPRIAERAAQIAL ASNAPKEFQKAVSEWIKLSPDNPKAQEAFIASGIVSNQLDKVSGTAASFLAKSKDKGAEI IKLQTQLALMKDKAKALSFFRTVTAKYSKLYQTQLGLARLEALNGNVSAAEKYSKNAFRT VENEETVLTYGSALLRTNPKEAEQILARYLKKNPKAVRIRDAYSQLLFQTKNFDALNVLE KEYRDDDRYLIALAISYVQISEVKKAKTILESVVERLKNNPDDENLSRAYLLLSDIAADE KELPKALDYASKVKGKLTAAAALQTANIYSRESKWDDALKALDTIKEDQEPAIVEEAALF KARILLETKGEKTAFDALNASLISMPYSKALHYEAAMLAERLDDIKTAEFHLKKAIEIDP GFANAYNSLGYTLLEQTKRIKEAERYINQAYQLDPRNPYILDSKGWLAFKQKKYIKAIEY LNDALKLQKELDIYLHLAEVYWTQGNKRKAADVLKEAEKLWPDAAELSALKKRLKMPNAQ N >gi|301349846|gb|ADCQ01000004.1| GENE 42 43625 - 44128 169 167 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302861073|gb|EFL84148.1| ## NR: gi|302861073|gb|EFL84148.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 167 1 167 167 298 100.0 1e-79 MRKINFLALLCLLLLCSCTTLVPQNAEVWTGRFSVASKSGTSVDRHSGSFRLIVLPEKKV LNINGPFGAKIASIEETPNECVLINSDNETYKAPNSAVLVNQIIGIPLSLDRFLAWVKNE KNTGDLNSHDWKVRSEDKEGVLRIRAEGYVPSTDSQVTLTILPRKQP >gi|301349846|gb|ADCQ01000004.1| GENE 43 44125 - 44976 245 283 aa, chain + ## HITS:1 COG:RSc0396 KEGG:ns NR:ns ## COG: RSc0396 COG1947 # Protein_GI_number: 17545115 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Ralstonia solanacearum # 8 283 12 288 289 195 42.0 7e-50 MKCCLNLPAPAKLNLFLHVIGRKPDGMHLLESVFSMIDLCDYLDFEVLDEPKIIREGDIS WALGKDLCCRAAKLMQQFAPHRGVRITVRKNIPDGAGMGGGSSDAATCLIALNRLWDINK KRNELLNLAVTLGADVPFFIFGQTAFAQGVGEVLTPVVTDDFEGAVVFPGASVPTADVFK SPNLTRDTDSIRITNSSSAALLRLPLDFGHNDLEPVAADICPSVKEAIDCLKQLGKARMT GSGSAVFYAVKSGAEVRLISNLPIGWRQWAFRSLKFHPLYDWA >gi|301349846|gb|ADCQ01000004.1| GENE 44 45135 - 46094 832 319 aa, chain + ## HITS:1 COG:RSc0395 KEGG:ns NR:ns ## COG: RSc0395 COG0462 # Protein_GI_number: 17545114 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Ralstonia solanacearum # 4 319 1 316 316 465 75.0 1e-131 MVQMVPDSLMVFSGNANPKLAQAVVQHLNIPLGRATVSRFSDGEVQVELNENVRGRDVFI IQPTCQPTNDNLMELVIMVDALRRASAARITAVIPYYGYARQDRRPRSTRVAISAKVVAN MLQAAGIDRVLTMDLHADQIQGFFDVPVDNIYASPILLGDLWKHNYSDLVVVSPDVGGVV RARAVAKRMECDLAIIDKRRPRANVSEVMNIIGEIEGRTCVIVDDIVDTAGTLCHAADAL KARGAKRVLAYATHPVFSGNAVEKITNSALDEVVVTDTIPLRQDALDCPKIRQLSCSSLL GETISRIACESSVSSLFAE >gi|301349846|gb|ADCQ01000004.1| GENE 45 46150 - 46803 574 217 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|91787188|ref|YP_548140.1| 50S ribosomal protein L25P [Polaromonas sp. JS666] # 1 215 1 222 227 225 54 3e-58 MKFTAVTRKAQGTGASRRLRRAEKLPGIVYGGKVAATPIELDHNEIFHALRKEKFHASIL EMVLDGKSERVLLRSFQMHPYKPQVLHIDFQRISADEQIRMNVPLHFVGEEKSPAITIDK TNVNHALTELLVSCLPDQLPEFITVDLSGLTVDKPVHVSDLVLPEGVTPVLKPEEDPTVA SAVVVAEESIADEAPAVPADAVPATAEKSAEEGAEKA >gi|301349846|gb|ADCQ01000004.1| GENE 46 46911 - 48671 1245 586 aa, chain + ## HITS:1 COG:XF0252 KEGG:ns NR:ns ## COG: XF0252 COG0513 # Protein_GI_number: 15836857 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Xylella fastidiosa 9a5c # 6 574 17 608 614 419 40.0 1e-117 MSANPFLELGLSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSL PLIQRYCLDTEPGKPQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKA LSRGVQIVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKR QTALFSATLPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGR ILDIESPRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDV IVATDVAARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLK NIERLTKRKITLLSVPTATDVHAKRLDLTRSSIHEILVNESDLGKYRSVVENLADEFDIL DVAAAAVKFANEANWKDVSEIELPDDLSWKKAPREDRRDRGERGERTRKERGPRELSQGM VRLFIGAGRDAGVRPQDLVGAIANEAGIPSKLIGSIDIADRFSLVEVDENVAQDVIYALR DAFIKGRQCVVRYDREGSPKSYPSKKEGKDSEKPSRKGKGNKKAYK >gi|301349846|gb|ADCQ01000004.1| GENE 47 48668 - 49273 283 201 aa, chain + ## HITS:1 COG:NMB0795 KEGG:ns NR:ns ## COG: NMB0795 COG0193 # Protein_GI_number: 15676693 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Neisseria meningitidis MC58 # 1 196 1 192 192 178 51.0 5e-45 MSNTSIRLIVGLGNIGDAYKGTRHNAGFHFVDEVANEYGARFQADRKFFGDVAKARIGGV EVILLKPSTLMNLSGKAVAAVSAFYKITPSEILVAHDELDLLPGTARLKIGGGSAGHNGL KSIVSCLGSSDFVRLRIGIGHPRDRQLQIPVADYVLSRPPKEDQELISSAIKKALSCIDE IVEGDFSRAMSILNEKNDPRK >gi|301349846|gb|ADCQ01000004.1| GENE 48 49230 - 49706 192 158 aa, chain + ## HITS:1 COG:TM0410 KEGG:ns NR:ns ## COG: TM0410 COG1683 # Protein_GI_number: 15643176 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 11 149 3 145 149 115 44.0 3e-26 MLCQFLMKKTILVSSCLLGCKVRYDKTSKPLPKEQLIALEEKFNLVGVCPEVLGGLPCPR QPAEISRDREVLTQSGQVLSTFFLKGAHEALNICKNYGIQLAVLKSKSPSCGFGKIYDGT FSGCLINGNGITSDLLLKNGVKVINESELDAWLKTVKE >gi|301349846|gb|ADCQ01000004.1| GENE 49 49709 - 50803 1188 364 aa, chain + ## HITS:1 COG:RSc2898 KEGG:ns NR:ns ## COG: RSc2898 COG0012 # Protein_GI_number: 17547617 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Ralstonia solanacearum # 1 364 1 364 364 543 73.0 1e-154 MGLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLAKLAEIVSP QRIVPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAIAHIVRCFNDDNIVHVAGHVD PLEDISVINMELALADLASVDKQLNKYTKQARSGGDKEALKLVTVLEKIRPVLNEGKPAR SVDLSKDEKAVIKQLCLLTMKPVMYVANVEEDGFENNALLEEVKAVGVEEKAPVVAVCAK IEAEISDLPDEEKQIFLEDIGMHEPGLNRVIRAAYQLLGLETYFTAGVKEVRAWTIHKGD LAPQAAGVIHTDFERGFIRAQTISYDDFVQYKGEAGAKEAGKLRVEGKDYVVQDGDIMNF LFNV >gi|301349846|gb|ADCQ01000004.1| GENE 50 50805 - 51185 220 126 aa, chain + ## HITS:1 COG:RSc1907 KEGG:ns NR:ns ## COG: RSc1907 COG1396 # Protein_GI_number: 17546626 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Ralstonia solanacearum # 6 121 19 133 173 65 31.0 3e-11 MALTSTKQRQEIGNRLKEERERLGYSEIQIAQLLGIPIDAYIRFEEGLADPGIYRMPRLS SIGFDVLYIITEERHIPGLEEDLLLQKFRSLSLKGKVSVFNTIDALERLAPNLKRKIRSV KRSKTD Prediction of potential genes in microbial genomes Time: Fri May 13 05:25:23 2011 Seq name: gi|301349845|gb|ADCQ01000005.1| Burkholderiales bacterium 1_1_47 cont1.5, whole genome shotgun sequence Length of sequence - 2541 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 170 150 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein + Term 274 - 325 9.4 + Prom 333 - 392 5.2 2 2 Tu 1 . + CDS 412 - 2199 1414 ## COG5421 Transposase + Term 2317 - 2349 0.3 - TRNA 2349 - 2424 86.8 # Asn GTT 0 0 Predicted protein(s) >gi|301349845|gb|ADCQ01000005.1| GENE 1 3 - 170 150 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 55 541 595 595 109 92.0 5e-23 QTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPETPEEVPEEPEIEPLLGTDIEI >gi|301349845|gb|ADCQ01000005.1| GENE 2 412 - 2199 1414 595 aa, chain + ## HITS:1 COG:MA2942 KEGG:ns NR:ns ## COG: MA2942 COG5421 # Protein_GI_number: 20091761 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 166 566 134 519 521 85 24.0 3e-16 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKIGTILGGQKDGKIRFDEAF LQEHPEFRNYQVERKGKDYVFTQISEEGITLEQARNIKKLYAGATWALDQIVADSPVGEF LKECFPRNKDYKKILSLAYFLILNQNNNVSFYESFAETTRLPYPRPLSPSAVTRLFQRIE LRDVRRYFLLMRSYLQEDEDNKIILALDSTSISSYSTRLTHIEYGKNKDDDALPQLNVLF LVDQKSGLPIFYRFYDGNVPDVSTIRHTIADQALLNMKSVVLVADKGYNSVKNINDCLIN KVEFIFNVRLGTKGCLARELIDEHRKEFADLNSGDPYTRKNIATAKVNWKYDPRPVDGKP ASNSATAELYYHMFYDPVIYQEAANKLPESLLTIKKKLLENEALTEQEEELKEKFFRNDK EKGLIIVNRRVDDYLKYKGFRVLVTDSEKDPVKAWTAYADRWRVEDAFATLKDRLGCNRI RCSDNKALQGKTFVQFIATGLSLMVRSRIRCYMKENKKAGKLNLVYESDAKILQVLNNVM QTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPETPEDVQEEPEAETLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 05:25:53 2011 Seq name: gi|301349844|gb|ADCQ01000006.1| Burkholderiales bacterium 1_1_47 cont1.6, whole genome shotgun sequence Length of sequence - 49393 bp Number of predicted genes - 51, with homology - 49 Number of transcription units - 20, operones - 12 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1234 - 2025 203 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase - Prom 2053 - 2112 4.1 3 2 Op 1 . + CDS 2318 - 3223 410 ## gi|302859849|gb|EFL82926.1| putative D-alanyl-D-alanine carboxypeptidase 4 2 Op 2 6/0.000 + CDS 3227 - 3523 297 ## COG2921 Uncharacterized conserved protein 5 2 Op 3 . + CDS 3529 - 4167 172 ## COG0321 Lipoate-protein ligase B 6 2 Op 4 . + CDS 4151 - 5119 821 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 7 2 Op 5 . + CDS 5123 - 6091 212 ## COG0320 Lipoate synthase - Term 5954 - 5989 -0.6 8 3 Op 1 . - CDS 6051 - 6575 304 ## Rpal_2556 hypothetical protein 9 3 Op 2 17/0.000 - CDS 6575 - 7513 1034 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 10 3 Op 3 24/0.000 - CDS 7528 - 8265 232 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 11 3 Op 4 . - CDS 8259 - 8804 362 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component - Prom 8935 - 8994 2.3 12 4 Tu 1 . - CDS 9077 - 9805 487 ## COG2823 Predicted periplasmic or secreted lipoprotein - Prom 9989 - 10048 9.6 13 5 Tu 1 . + CDS 9708 - 9917 56 ## - Term 10825 - 10859 5.1 14 6 Op 1 5/0.000 - CDS 10878 - 13388 2135 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 15 6 Op 2 16/0.000 - CDS 13427 - 14602 859 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 16 6 Op 3 . - CDS 14615 - 15988 923 ## COG0593 ATPase involved in DNA replication initiation - Prom 16230 - 16289 4.1 + Prom 16206 - 16265 7.7 17 7 Op 1 . + CDS 16363 - 16503 171 ## PROTEIN SUPPORTED gi|91790730|ref|YP_551682.1| 50S ribosomal protein L34 18 7 Op 2 . + CDS 16529 - 16984 134 ## gi|302859863|gb|EFL82940.1| ribonuclease P protein component + Prom 17197 - 17256 3.5 19 8 Tu 1 . + CDS 17278 - 18975 2211 ## COG0706 Preprotein translocase subunit YidC + Term 18982 - 19024 3.2 - Term 18968 - 19010 3.2 20 9 Tu 1 . - CDS 19035 - 19325 281 ## gi|302859867|gb|EFL82944.1| hypothetical protein HMPREF0189_00020 - Prom 19357 - 19416 4.3 21 10 Op 1 11/0.000 + CDS 19340 - 20731 980 ## COG0486 Predicted GTPase 22 10 Op 2 24/0.000 + CDS 20755 - 22665 868 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 23 10 Op 3 . + CDS 22668 - 23312 183 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 24 11 Tu 1 . - CDS 23432 - 24262 288 ## COG0716 Flavodoxins 25 12 Op 1 . - CDS 24363 - 24968 388 ## gi|302859871|gb|EFL82948.1| conserved hypothetical protein 26 12 Op 2 . - CDS 24977 - 25972 441 ## COG3008 Paraquat-inducible protein B 27 12 Op 3 23/0.000 - CDS 25975 - 26736 270 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 28 12 Op 4 . - CDS 26736 - 27800 579 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component - Prom 27990 - 28049 3.7 + Prom 27946 - 28005 3.8 29 13 Op 1 25/0.000 + CDS 28047 - 28844 457 ## COG1192 ATPases involved in chromosome partitioning 30 13 Op 2 . + CDS 28876 - 29733 425 ## COG1475 Predicted transcriptional regulators + Term 29772 - 29809 -0.9 31 14 Tu 1 . - CDS 29719 - 29916 88 ## - Prom 30091 - 30150 3.0 + Prom 29767 - 29826 6.5 32 15 Op 1 . + CDS 29870 - 30214 169 ## gi|302859877|gb|EFL82954.1| ATP synthase F0, I subunit 33 15 Op 2 40/0.000 + CDS 30234 - 31061 855 ## COG0356 F0F1-type ATP synthase, subunit a 34 15 Op 3 37/0.000 + CDS 31113 - 31355 507 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 35 15 Op 4 38/0.000 + CDS 31426 - 31896 692 ## COG0711 F0F1-type ATP synthase, subunit b 36 15 Op 5 41/0.000 + CDS 31899 - 32447 537 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 37 15 Op 6 42/0.000 + CDS 32466 - 34007 2159 ## COG0056 F0F1-type ATP synthase, alpha subunit 38 15 Op 7 42/0.000 + CDS 34030 - 34902 912 ## COG0224 F0F1-type ATP synthase, gamma subunit 39 15 Op 8 42/0.000 + CDS 34932 - 36335 1991 ## COG0055 F0F1-type ATP synthase, beta subunit 40 15 Op 9 . + CDS 36380 - 36793 459 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Prom 36818 - 36877 3.5 41 16 Tu 1 . + CDS 36903 - 37271 378 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 37291 - 37318 -0.8 + Prom 37287 - 37346 6.4 42 17 Op 1 1/0.000 + CDS 37515 - 38450 975 ## COG0407 Uroporphyrinogen-III decarboxylase + Term 38517 - 38572 3.5 + Prom 38481 - 38540 2.5 43 17 Op 2 . + CDS 38600 - 40603 573 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 44 17 Op 3 . + CDS 40605 - 41858 1049 ## COG0826 Collagenase and related proteases - TRNA 41872 - 41948 73.7 # Arg CCG 0 0 45 18 Op 1 3/0.000 + CDS 42079 - 42489 385 ## COG3536 Uncharacterized protein conserved in bacteria 46 18 Op 2 1/0.000 + CDS 42491 - 43255 313 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 47 18 Op 3 . + CDS 43269 - 44201 1227 ## COG4395 Uncharacterized protein conserved in bacteria + Term 44216 - 44255 8.4 + Prom 44220 - 44279 4.3 48 19 Op 1 . + CDS 44348 - 45811 1568 ## COG0591 Na+/proline symporter 49 19 Op 2 9/0.000 + CDS 45829 - 47184 1509 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 50 19 Op 3 . + CDS 47198 - 49024 1864 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 49054 - 49083 3.5 + Prom 49156 - 49215 6.5 51 20 Tu 1 . + CDS 49242 - 49392 180 ## gi|302858921|gb|EFL82007.1| transposase, IS4 family protein Predicted protein(s) >gi|301349844|gb|ADCQ01000006.1| GENE 1 461 - 1237 493 258 aa, chain - ## HITS:1 COG:NMB2075_2 KEGG:ns NR:ns ## COG: NMB2075_2 COG1521 # Protein_GI_number: 15677897 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Neisseria meningitidis MC58 # 4 250 3 240 254 100 32.0 2e-21 MTNILVDIGNSALKWSSLENMEKPRAYLHDSKTQLSSVLVSDLSRLPFEEAWACSVAQQP LAAQFEELVNCKGGKVHWLRAEEKFEGPLTMINEYDSPSRLGADRWFAALGAASQYFGNS IVLVQFGTATTVDEINFERDRYVFLGGRIAPGIDVMFKSLQERIPALNVSSGELVDFPKN TEDAVTTGIIECQIGLIKNAIEKLKKKSDHAPVIVVLTGGGIESYEALHQCAVDHMPRAH INTNLVLKGLALEAQNKR >gi|301349844|gb|ADCQ01000006.1| GENE 2 1234 - 2025 203 263 aa, chain - ## HITS:1 COG:ECs4900_2 KEGG:ns NR:ns ## COG: ECs4900_2 COG0340 # Protein_GI_number: 15834154 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Escherichia coli O157:H7 # 19 262 5 241 245 98 33.0 1e-20 MKDYLETECVEKIKKECLLQVFDEIDSTNEYLKKLVKREASSLAQPILVVAQRQTAGKGT KGRKWMDSPASLKFSLLIGFEEESERLALLSPYIALKLRKVLSAAAKEEVKIKWPNDLYC FGGKTAGILTEVIQKKGMAYLIIGVGINLATDPEVVRNINSPVGSLFKHIEPEELERVRS LILSCACEEIIRAVRSLPEKFSAEEIKEWNHSDLYKGRKLRLIEGEKIVSEGQNMGIDKK GRILLQDGNQQKAFCIGEASLRL >gi|301349844|gb|ADCQ01000006.1| GENE 3 2318 - 3223 410 301 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859849|gb|EFL82926.1| ## NR: gi|302859849|gb|EFL82926.1| putative D-alanyl-D-alanine carboxypeptidase [Burkholderiales bacterium 1_1_47] # 1 301 67 367 367 527 99.0 1e-148 MEKVESKKTELNSTITITPEVLAGHQSSKGILLGADKEISIKELLRALIFLQAPEANKIA LHWLETLSDKKDEPAKASEPEKKINGKSLLEDVGFVIRNLPKEVGQITDQTVEIQEKNFP SNIRISHSEKSDLLFILDNSSKVALGAAIVASRLRENNLRIVLCLVHDSDSNALFPEIAQ ALVSSVNHFETAKVFTEGKPVTVIPIIDGEQQNIALAPKQDVFITVSSDELKKQKTPKVE MIIERKELIKAPVTTNEPLARINIKLGDRVLKTVPLYAVADVAEKKSKLSDIYKTFKQII E >gi|301349844|gb|ADCQ01000006.1| GENE 4 3227 - 3523 297 98 aa, chain + ## HITS:1 COG:RSc0326 KEGG:ns NR:ns ## COG: RSc0326 COG2921 # Protein_GI_number: 17545045 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 5 98 3 97 97 90 47.0 7e-19 MAEQDKKDLPEELPAPLLQFPCEFPMKVVGQRTDDFAQQIVAIIEKHAPDFNASEVEMKV SGKGNYLSLGFLVNATSQDMLDDLYRSLTAHPLVKFVL >gi|301349844|gb|ADCQ01000006.1| GENE 5 3529 - 4167 172 212 aa, chain + ## HITS:1 COG:VC0944 KEGG:ns NR:ns ## COG: VC0944 COG0321 # Protein_GI_number: 15640960 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Vibrio cholerae # 1 203 8 200 219 176 41.0 3e-44 MVIKDLGQVDYLTVWQEMIDFTKKRDQTTEDEFWICEHPPVFTLGTSLKNNTFPIRGIPC IHTDRGGKITYHGPGQLVGYPLLDLRKNHLYPKELLNLINQTVLSVMREFGVEGVLVAGA PGIYVSKSGGAGQFQNLAKICSIGLKISGHSSYHGFALNVSANLEPFSYINPCGYEGLRI VNLNKFAQNATLESTKKVLIEKIKEQFCEKRC >gi|301349844|gb|ADCQ01000006.1| GENE 6 4151 - 5119 821 322 aa, chain + ## HITS:1 COG:VC2673 KEGG:ns NR:ns ## COG: VC2673 COG1575 # Protein_GI_number: 15642668 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Vibrio cholerae # 12 262 3 262 305 116 30.0 7e-26 MKSVVKKEIRPHSFAAWMAFMRPKTFWIAAAPVCVGTAFAGALAGTWNLWIFLFTLLGAV SIQAMSNMVNDYAYNLKKAENGTRVGLPRATTEGWISMSAAKKMVGFSIVVCSLFGILLI VIGGLPIACIAVLSLICGFCYMGGPKPIAYTPFGEFLVLVFYGLFAVSGTYWLQTHSFNW LTLVPGLSLGLIGAAILFVNNYRDLDHDRSVGRYTLVAACGRKLANTLYMLMIFLPFVFI GWMVPLNQHYWPFLFVLMALPRASFLPHLLKTSPQEKITMVMFKTIQLELFFGFLLTLSG IAVAFLSWPSTQLAANLFVSPF >gi|301349844|gb|ADCQ01000006.1| GENE 7 5123 - 6091 212 322 aa, chain + ## HITS:1 COG:RSc0322 KEGG:ns NR:ns ## COG: RSc0322 COG0320 # Protein_GI_number: 17545041 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Ralstonia solanacearum # 20 309 40 330 333 376 58.0 1e-104 MDHSDFNKKREVLKIKNYKEFVSQEKLKKPEWLKIKISPNRQTIKEVRNLLASNTLTTVC EQACCPNLGECFNGKRATFLIMGNICTRRCPFCDIAHGYPDPLDPDEPKRLAEAAKTLGL KYVVITSVDRDDLKDGGASHFAKCVHELRKQEGVKVEILVPDFRGRVERAIDELLSAPPD VFNHNIETVPRLYKEARPGGNYLHSLNLLKTWSERSPSIPTKSGLMVGLGETDDEVFEVM KELREHGVSMLTIGQYLAPSKYHIPVKRYVAPETFSKFAETAKNMGFLSCFSGPLIRSSY SAFEQALEASTLSLKKTEHPQS >gi|301349844|gb|ADCQ01000006.1| GENE 8 6051 - 6575 304 174 aa, chain - ## HITS:1 COG:no KEGG:Rpal_2556 NR:ns ## KEGG: Rpal_2556 # Name: not_defined # Def: hypothetical protein # Organism: R.palustris_TIE-1 # Pathway: not_defined # 14 138 11 137 166 81 35.0 2e-14 MTEVISVYDDGVRLDIPFEACVLYHGRDSIGGLSLGYRLLRFALNKLTDGRIPERKEITF KTAFPGPGLRDAVEMTTRAVTRKAYEVLENAPEGTPEGVYGHMYFEITVGSRTLCCALKP GVLPEEFVQTGRAIKKGNYSEQDARHWREQKDALSEAIWNIPNFEDVLSFSMKE >gi|301349844|gb|ADCQ01000006.1| GENE 9 6575 - 7513 1034 312 aa, chain - ## HITS:1 COG:SMc02344 KEGG:ns NR:ns ## COG: SMc02344 COG0715 # Protein_GI_number: 15966325 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Sinorhizobium meliloti # 33 303 47 325 344 115 30.0 1e-25 MKKTLLACLFGLGLGACVNAADVQEINIAYVKAPFNLQNIVMKHNQMMEKEFAKDGIKVK WHDITSGAKQTQAMAAGSLDASAAMNTASILMANAAGNPIRIATGVAHPTSLFAIVGKPG PQMKIEDLKGKTVVGPKGTVLHQTLVAALTSKGIDPKDVNFINMDIPKGMTAMMAGKADA ALLAASGIYKANEGGAKTIATAQGLIQPNLVFTVSGKFAKEHPQLVERLVKVNREAHQWI KDHKQEALEIGAKEHGISVKTAENLADGSHFYDTLTQKDLDELAADQKFLRENGMMAKDV NIKEIVLPTALK >gi|301349844|gb|ADCQ01000006.1| GENE 10 7528 - 8265 232 245 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 213 1 214 305 94 30 2e-18 MVTGVTLKGICKSFQSRGRVVSPLKDFSLNLEPGKLTAVLGKSGCGKTTLLKVISGLEER DAGEISFFDEAGRPVSSPKLSLVFQDPRLLPWKTVEENLSLAIRHLPEEERKQRIREVLE LVRLPEVEALYPSELSGGMAQRVGLARGIIAKPDLLLLDEPFSALDFMTRSRLQMDFSKI QDELGMTMVLITHDVNEAVLLSDKTVFLEEGKVKQEVNIALPKPRRFGDQNLLPFQQTLF NFFLT >gi|301349844|gb|ADCQ01000006.1| GENE 11 8259 - 8804 362 181 aa, chain - ## HITS:1 COG:AGpT116 KEGG:ns NR:ns ## COG: AGpT116 COG0600 # Protein_GI_number: 16119871 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 21 176 151 306 313 133 44.0 2e-31 MLVAIPLAYFFYYSPASEKRAKLLLEALRFIPPLSLIPLLILWLGIGEAAKLSIVFLASF FPIYLNVFSGFKQIDKSYKELAFMLRLNRMERFKHIEFPASLPNIFTGLRLGFGYSWRAL VGAELIAASSGLGYLIGDASEMSRTDKVFVGILCIAVLGVLGDQLFQLFGKRLTPWMKSK W >gi|301349844|gb|ADCQ01000006.1| GENE 12 9077 - 9805 487 242 aa, chain - ## HITS:1 COG:PA4426 KEGG:ns NR:ns ## COG: PA4426 COG2823 # Protein_GI_number: 15599622 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Pseudomonas aeruginosa # 42 191 39 191 192 89 35.0 5e-18 MKPSRIAILLFVTSSLLMSTACAPVLIGSAAVTGVSVAADRRSAGAVANDGVIEAKSAMH LSQTNFASSHITTTSYEGNVLLSGEIDSEASKQKATEIVKSINEVNKVYNELAVQANSSL TTRMNDSITASKVRAALLDNKQVTLTSIKVVVDRGICYLLGTVTQTEAEIISKIASRVPG VVQVVRLFTIITPEELEKRQLIDSKLQQNEAAEVTEGTTEENGKLTSEEGATEEVSVSPV KL >gi|301349844|gb|ADCQ01000006.1| GENE 13 9708 - 9917 56 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTAADPINTGAQAVDIKREEVTNNKIAIREGFILDRYCLVSRAVRLHLLHFTYETSIFMS LEVAHLLIY >gi|301349844|gb|ADCQ01000006.1| GENE 14 10878 - 13388 2135 836 aa, chain - ## HITS:1 COG:RSc3440 KEGG:ns NR:ns ## COG: RSc3440 COG0187 # Protein_GI_number: 17548157 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Ralstonia solanacearum # 1 835 1 841 842 939 59.0 0 MSEMQDKNYSAEESYGEDAIQVLEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDE ALAGYADHINVTINRDESITVVDNGRGIPTDVKMSDKHEPKRSAAEIALTELHAGGKFNQ NSYKVSGGLHGVGVSCVNALSSWLKLTVRREGVEHYLNFKKGVLQDRLTEKVQTPTGPVE ISPMHVSGATDRRGTEVQFLPDAEIFGTVDFHYEVLSSRLRELSFLNNGVKIHLADLRKG KDEVFQFAGGVSGFVDFINRDKTKIHDNCFYTNKTVTVNPEENINVEVAMQWTDGYTENF LAYTNNIPQKDGGTHVNGLRSAMTAVIKRYIEESEFAKKEKIDLTGEDIREGLTCVLSLK MPEPKFSSQTKDKLVSSEARPAVEQVVRTALESYLQENPKDARIICEKIMDAARAREAAR KARETTRRKGLLGSAGLPGKLADCSERDRSLCEVFLVEGDSAGGSAKQGRDRSFQAILPL RGKVLNVEKARIEKLISSEQIATLIAALGTSIGDEFDLDKLRYDRVIIMTDADVDGAHIR TLLLTLFYRQMPKLIEGGHVYIAQPPLYKVEYGQKTKYIKDDKELYTFLVDQGITGTNLY VSKEAFENKQGISGDKLKEYFLAYSDAQNIISKFSRFVDASVLTAIAAGATIDLSSDKAA ADSIEKLVAKITDPAISLGYAVEENIPTIIVKRTHFGNIIESRITPAFIETPDYLTLTAA SVTFKNLLHEGACLVRTTNNKETIQPISNFSEAISFILKIGKAGVKKMQRYKGLGEMKAE ELEETTMDPTKRSLLKVRIEDAIAADQVFTKLMGDEVEPRRRFIEDNALLAGNIDT >gi|301349844|gb|ADCQ01000006.1| GENE 15 13427 - 14602 859 391 aa, chain - ## HITS:1 COG:RSc3441 KEGG:ns NR:ns ## COG: RSc3441 COG0592 # Protein_GI_number: 17548158 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Ralstonia solanacearum # 26 391 3 371 371 326 43.0 4e-89 MNETKLENGPAAASEGIDKTAGTSVFINSKKENIFKPIQAVSGVVQRKQPLPVLSNILFV QKGKQVTLVANDLDLQILTVAEIGEENSEMSTTISARKLTDILATLPDTNPLSFSKKGDH VVLSSGKSKFELQTISAEEFPVITEVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLN GVYICAENNKVRGVATDGHRLALCDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIE VYISERQIKFKFVGIEILSKLVEGRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTA DKLMGVRWNLTPGHLNVAANNADMEEAEDEISVEYSGSPIEIGFNVAYLIEVLNVLKNDS VRISLGEQKNPALIRMPDNDNFKFVVMPMKI >gi|301349844|gb|ADCQ01000006.1| GENE 16 14615 - 15988 923 457 aa, chain - ## HITS:1 COG:RSc3442 KEGG:ns NR:ns ## COG: RSc3442 COG0593 # Protein_GI_number: 17548159 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Ralstonia solanacearum # 74 454 140 521 522 340 46.0 3e-93 MREVWKSVLAFLKNTIPEEVFVPWFGKVEFTEDSEPDIINISVPSVPHSKFIKAQYEKDI EEKASEICGREIKLKITVKDPNKGAMISEPLPGPANTLPEEEKAPKSIDEIATKCGLHSG LTFDTFVIGNANRVARSSAMLVAEFPGERCNPLFIYGGVGLGKTHLMHAVGRKILEDNPN TNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQFLCKRGGTQQRL FNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEFELRAAILLQKA KQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPITEELAKEALQGITGTG RISIENIQQSTAEHFSIKIADMHSKRRVANVAYARQIAMYLAKELTQKSLIEIGYAFGGR DHATVLYAVKKITKERAQNQELNHTLHLIEQDLKNWN >gi|301349844|gb|ADCQ01000006.1| GENE 17 16363 - 16503 171 46 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|91790730|ref|YP_551682.1| 50S ribosomal protein L34 [Polaromonas sp. JS666] # 4 46 2 44 44 70 79 2e-11 MATKRTYQPSKVKRARTHGFLVRSRTRGGRKVLAARRRKGRHVLAL >gi|301349844|gb|ADCQ01000006.1| GENE 18 16529 - 16984 134 151 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859863|gb|EFL82940.1| ## NR: gi|302859863|gb|EFL82940.1| ribonuclease P protein component [Burkholderiales bacterium 1_1_47] # 1 151 1 151 151 261 100.0 7e-69 MALGGRANSFPQKAKIKKSQDFLTVLKARGKGVVRLSGQWFELKAVLTQGKVSSRFGLTV GKHFSKRSVDRNLVKRILREAIRHSVLTHPAESPSALQSRTFVLRLKKKVPVPAEGACLN SLKKELSEDANRLLSQLEARIQVLDQGKKDD >gi|301349844|gb|ADCQ01000006.1| GENE 19 17278 - 18975 2211 565 aa, chain + ## HITS:1 COG:RSc0004 KEGG:ns NR:ns ## COG: RSc0004 COG0706 # Protein_GI_number: 17544723 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Ralstonia solanacearum # 4 559 2 547 553 514 44.0 1e-145 MGSDIQRALLWILFGLSAFMLYDRWEVYNGRPSFFGAETQQVATTEAPKNEAALPSQSQT ASLPAEAKTAVKAEPIQVETDLLKLSFDPEGAVIIGSELRKEKQTIPWTDTGLVGMILGN KAETPADVVLFTEQKGRTYLAQTGLIGGPYPTHKTQFKLVPGPLKMADGQDNLTVKFEGE SGGVKVIKSFTFERGHYGIKVSHEVVNNTASEIKPSVYYQLTRDGEKPEGESTMVNAYTG AAVYTDKDKFQKVSFSDIADGDKDFQAKADNGWIAMIQHYFVSAWVPTQGVERENYTNTV GEKLYAVGSIQQMDTIAPNSSKTIEATLYSGPQDQTRLDAIAPGLSLVVDYGWLTFLAKP IYWLLSFLYGIVGNWGWAIVLLTCIVKAILYPLSLAGYRSMAKMKDLGPRMKALKEKYGD DKQRLNMAMMEMYKTEKINPVGGCLPIALQLPVFLALYWVLLASVELRDAPWIFWVTDLA APDPWFILPILMIITMVIQFKLNPTPPDPVQAKMMAIMPFVFGIMFIFFASGLVLYWLVN NILSIIQQYVVNKQIEADRIKRQSN >gi|301349844|gb|ADCQ01000006.1| GENE 20 19035 - 19325 281 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859867|gb|EFL82944.1| ## NR: gi|302859867|gb|EFL82944.1| hypothetical protein HMPREF0189_00020 [Burkholderiales bacterium 1_1_47] # 1 96 13 108 108 149 100.0 8e-35 MSLKQNNNELSRLVGAAIAVLIALPIAAWVGSFIGDSYTARATAYILILAWSVLGAGILC FITRNSTKPVTAVSLILWIISVWVWPILLLVYWQKK >gi|301349844|gb|ADCQ01000006.1| GENE 21 19340 - 20731 980 463 aa, chain + ## HITS:1 COG:RSc0005 KEGG:ns NR:ns ## COG: RSc0005 COG0486 # Protein_GI_number: 17544724 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Ralstonia solanacearum # 4 463 21 481 481 398 49.0 1e-110 MSLVKTSPIIAIATGNGNAGVGIVRISGEEEDVKALFQKMFPGKEIKPRYAELLPIRDTQ GQILDTGIVIYFRAPFSYTGESVLELQVHGGRVLLNWIVQEVLIFGKEFGLRQALPGEFT ERAFLNGKIDLVQAEAVADLIEANSRNAAKAASRSLTGEFSNKVNALNDALINLRVEVEA ILDFPEEEIDFLSEYQSQEKLEDIQNRLESVLDSARQGEILRDGLRVALVGETNVGKSSL LNYLAGEEIAIVSDIAGTTRDKIQTDLIISGVPFHFVDTAGIRETEDRIEQIGIERTKQE ISKADVILEIRDIRDQQNKNKDSMQTALKMIKGKDVPIITVLNKVDLISTPLPNTKDVSR GTIIETSAVTGKGMQELKSELLKLAGFSENQSIYMARERHIHNLLNVKESLKRAASYLNS TSPQLELFAEELRGASDELGEITGKISSDDLLGKIFSGFCIGK >gi|301349844|gb|ADCQ01000006.1| GENE 22 20755 - 22665 868 636 aa, chain + ## HITS:1 COG:RSc3328 KEGG:ns NR:ns ## COG: RSc3328 COG0445 # Protein_GI_number: 17548045 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Ralstonia solanacearum # 5 634 3 637 647 773 60.0 0 MSYCYPNEYEVIVVGGGNAGIEAAAACARMKAKTLLVTHNLDNLGQQSCNPSIGGIGKSH LVKEVDALDGLIAKATDFSGIQFRVLNASKGAAVRATRAQIDRRLYKYQMRTRIEAIENL SLIEEAVDALLLENGKVAGVYLRSGISIKAKAVVLCAGTFLNGKVFIGQTSYLAGRSGDP SSVNLGINLAELGLPKARLKTGTPARLDGRTIDFSKCERQLGDSEPVPVFSYMGSPEDHP QQVPCWITDTNQTTHDFIRKGLDRSPLFTGVIEGIGPRYCPSIEDKIHKFASKNSHHVFL EPEGLNTYEYYPNGISTSLPYDVQVNFIHSIKGLENVHIIRPGYAIEYDYYDPTHLKDNL ESKEFDNLFLAGQVNGTTGYEEAAAQGLMAGINAVLKIRDEEPFLLRRDQAYLGVMVNDL ITKGVNEPYRMFTSRAEYRLSLREDNADERLTEIGYKLGVVSEERWKFFQEKRERLARET ERLKSIWVNPGVLDKFSLEEVVGAELSKESQLYVMLKRPEVDYQKLKLLKTKDGESLLPP PYLSDEDAETLTTKVKYSGYEDKQKAEVQKNLEKIETVIPEDFDYDSAKGLSFEITQKLK KIKPRTLGEALNISGVTPAAISILLVYLKRYRGKKE >gi|301349844|gb|ADCQ01000006.1| GENE 23 22668 - 23312 183 214 aa, chain + ## HITS:1 COG:NMA0077 KEGG:ns NR:ns ## COG: NMA0077 COG0357 # Protein_GI_number: 15793106 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Neisseria meningitidis Z2491 # 1 214 1 207 207 183 46.0 2e-46 MEKNREELIQGLERLGITAGEEEVSKLISFSELLLKWNKVYNLTAIRDEGDVIRKHLLDS LTLLPYFKLYGSEVGCRTLDVGCGGGLPAIPLSIFLKDFDFNLIDTVNKKITFVRQAVIQ LKLPNVNAFNERVENFHPLKPFNLISCRAFSSLASFVTLTEHLIDENGRWLAMKGKYPVE EINELPAGVGVEKVIELKVPFLDTERHLIVLKKK >gi|301349844|gb|ADCQ01000006.1| GENE 24 23432 - 24262 288 276 aa, chain - ## HITS:1 COG:FN0119 KEGG:ns NR:ns ## COG: FN0119 COG0716 # Protein_GI_number: 19703467 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Fusobacterium nucleatum # 30 124 12 109 164 60 34.0 3e-09 MKSITRRALLTILAGFSFFNPAAVLSAKEKELAIFYSFSGNSKRVTEIFQKLEHCDISEI KTLEPYNAYDAREDRKKRELPPISPLNIDLDNYRKIVLIFPVWGYTPALPMQSFLRKHSL NNEVEIISVGVGRLGGMYEDVHKLLPHAKITRFTHVPRASDLTDRELETMLRNRSLPPSM HAILTKGLDAYKEEIKARIDFTNAEFAKMLPRTATWCKTPQVKPKPRLSTNPAPDCLSFQ NNILYFNGQPIGMGVFYDALPSEGSEVTISGSTNAV >gi|301349844|gb|ADCQ01000006.1| GENE 25 24363 - 24968 388 201 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859871|gb|EFL82948.1| ## NR: gi|302859871|gb|EFL82948.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 201 1 201 201 366 100.0 1e-100 MKRRTLALGLLTGLAGCSILPERPPLKLYTLLANLNTQDCRAPKRRLSSVRINSPMIASP YDSTRCYVLTKDNRIYNTDINRFSSNPGNLIGDGLREVIQDCGPWNVVLSPNSISTPAYQ LTVFVSKFFINAVKKPFAAVVEMEVSVVASVSGKLVFHETYSQTQNTPTDDMPGAVSAFD VCLENIFKTLTNDLNKQATRM >gi|301349844|gb|ADCQ01000006.1| GENE 26 24977 - 25972 441 331 aa, chain - ## HITS:1 COG:RSc0601 KEGG:ns NR:ns ## COG: RSc0601 COG3008 # Protein_GI_number: 17545320 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Ralstonia solanacearum # 43 228 297 489 547 61 24.0 2e-09 MGVKTNYFRLGLFVVAAIAAAIASILILLGPSLGKPYAEMETYFQFSISGLEVGAPVKFR GIQVGQVQEILLSTEAYPSSSQEILSETKAVAVVRMRMELAGKEVESHLQDYINHGLRIQ TQLAGITGSLYLSVDFLDPKKYPADRVPFDWKPKYLFIPSAPSLSNEIVENVKGFLASLD SLNINKDLQETVPVIQSLIANLERIANGIDPSSFNKLGSSLSNLLNQADNKINQFDINQL NTLIAQLDKSAEQIGNLSQKAETKQLVTNLTNLSRNLNQMVSNNGYDVTVTLMNLSKIAQ NLKNLTNNISGSASEFLAPAPKTAEPFQVNK >gi|301349844|gb|ADCQ01000006.1| GENE 27 25975 - 26736 270 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 6 218 2 215 223 108 32 6e-23 MDTSKKSVISVRNLTMGWPGKILLENVSFDIYEKQIVFIMGGSGCGKSTLMKTIIGLNPP MAGDILIRGKSIINSGKEIPEIQRSLGIMYQSGALFGSLTVLENVRFPLDQFSKLPLEAR NLTAQMLLNAMEMPGSANLTPGELSGGMIKRAGIARALSLGATILLLDEPSAGLDPITAA NLDQTIRKLRDNLGATFVIVSHELKSIFRIADRCIMLDPKTRSIIADGAPNDLQKNSPNP WVRQFFNAQPDAE >gi|301349844|gb|ADCQ01000006.1| GENE 28 26736 - 27800 579 354 aa, chain - ## HITS:1 COG:Cj1646 KEGG:ns NR:ns ## COG: Cj1646 COG0767 # Protein_GI_number: 15792951 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Campylobacter jejuni # 31 354 37 369 369 166 32.0 6e-41 MDKQLSVKLPPSLTAETSVKIWEQVLGAESSGQTIFDASDLTFCDESGLTLLYELRSRPD AFKLINVSASIETLYNTMLKNFSPKPVEKKSLGVVSSLGKWLYDAASSTKQSIIFLGSAC CALTDVLLHPSQIRFGEILSVSDEAGSRAVGIICLIGFLMGVIIAFETALVAQIFGAVIF VVNGIGIAMTRELGPLMTAILFAGRSGSAFAAQLGTQKVNEELNALTTFGLSPMYFLVVP RLIASSLVVPLLSVFATILGILGGGLVMAMYDITYTQFYVQLLKSVTVTDIVFGLVKAVI FGFVIALIGCQCGMNTGAGAAAVGSSTTKSVVKSIIWIVVIDGAAALLTNRLGI >gi|301349844|gb|ADCQ01000006.1| GENE 29 28047 - 28844 457 265 aa, chain + ## HITS:1 COG:RSc3326 KEGG:ns NR:ns ## COG: RSc3326 COG1192 # Protein_GI_number: 17548043 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Ralstonia solanacearum # 1 251 1 252 261 283 55.0 3e-76 MAKIYCIANQKGGVGKTTTAVNLAAALSQLSFNVLLVDLDPQGNATTGSGLEKNNLVQSV YEVLLDRADIKKVITHSKSGYDILGSNRKLAAAEEELLSAARKELRLKTKLDEVSGQYDV IIIDCPPTLSILTINAFCAADGLIIPMTCEYYSLEGVSDLLLSIRAVREQVNSGLVITGL LRVKFDPRITLQREVSEQLSGYFGSSVFSSVIPTNVRLAEAPSYGLSGIQYDPSSRGAVS YKTFAEELVKKDKLKKLLKNRKREG >gi|301349844|gb|ADCQ01000006.1| GENE 30 28876 - 29733 425 285 aa, chain + ## HITS:1 COG:RSc3325 KEGG:ns NR:ns ## COG: RSc3325 COG1475 # Protein_GI_number: 17548042 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Ralstonia solanacearum # 11 280 21 294 303 212 44.0 7e-55 MDSVFSMKNVADVIDNPKVPEPKSSLPLSALKPGKFQPRNDVENSGLAELAQSIKQNGIL NPIVVRKLSSDKYEILAGERRYQAAKIAGLKKVPVTILDVSDKQAMIVGLVENLQRKDLS ALETAEGIQRLIEEFKYSHEGVAEAIGRSRPMISNLLRLLGLPEAVKTMLRAGEIEMGHA RALLSLPEEQQVWLAQQIKEKGLSVRQTEEYVARYKERENTSENPHKTVQKSSEFTKFED ELSKILNTDVKLVSNSKGRGNLQISFKNEKEFAAILELLRSLNNK >gi|301349844|gb|ADCQ01000006.1| GENE 31 29719 - 29916 88 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAPLCQKTVLLKAFMVSKISLFPVLTAKIRMHSNELGQNEQLNQSIIIRLNEGFVPINI ALFII >gi|301349844|gb|ADCQ01000006.1| GENE 32 29870 - 30214 169 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859877|gb|EFL82954.1| ## NR: gi|302859877|gb|EFL82954.1| ATP synthase F0, I subunit [Burkholderiales bacterium 1_1_47] # 1 114 1 114 114 173 100.0 3e-42 MKALRRTVFWQSGAVILCGLVSWVAAGSVAGISSLLGGLVCALPSMLVVLLMHLFRNQQA HPLAIFLYEFIKVSLVILGFFSVALFYKELSWLPFILSAGIVLLSHIFALASRK >gi|301349844|gb|ADCQ01000006.1| GENE 33 30234 - 31061 855 275 aa, chain + ## HITS:1 COG:RSc3323 KEGG:ns NR:ns ## COG: RSc3323 COG0356 # Protein_GI_number: 17548040 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Ralstonia solanacearum # 4 275 32 307 307 279 59.0 3e-75 MAGTATEYIQHHLTHLNNIGAKQGSIVDFSVFNFDTAVFSILMMLLAVWLMYSAAKKATS GVPGKWQCAVEMLVDMVSEQAKSIVHGDRTFIAPLALTVFVWVTLMNAIDLIPVDLIPAI CGWFGIHYMRPLPTADLNGSMGISVGVLLLMIYYGIKIKGPAGFGKELFTAPFGNFILLW PFNFLLNIIEYLAKTVSLGMRLFGNMYAGELLFFLIALLTGMLWEGEVGLAAFGVLGQFF AGLCWWLFHILIVLLQAFIMMMLTLVYIGQSHEGH >gi|301349844|gb|ADCQ01000006.1| GENE 34 31113 - 31355 507 80 aa, chain + ## HITS:1 COG:NMA0514 KEGG:ns NR:ns ## COG: NMA0514 COG0636 # Protein_GI_number: 15793512 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Neisseria meningitidis Z2491 # 7 80 4 77 78 84 74.0 3e-17 MTNVAYVALACGLIIGFGAFGACIGIAIMGSKYLEASARQPELINTLQTKMFLLAGLIDA AFLIGVGIAMMFAFANPFVG >gi|301349844|gb|ADCQ01000006.1| GENE 35 31426 - 31896 692 156 aa, chain + ## HITS:1 COG:NMA0515 KEGG:ns NR:ns ## COG: NMA0515 COG0711 # Protein_GI_number: 15793513 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Neisseria meningitidis Z2491 # 1 156 1 156 156 115 54.0 5e-26 MNINATLFVQMAVFFVGAWITMKFIWPPLNRAIEERQKKIADGLAAADRGEHALEEAKKE GASIEAAARAQSQVIVAQGEKRGQAIIEEAKAQAQVEADKIIAAARAQAAQEVQSARDAL RDQVAQLAVSGASQILGKEVDASAHQQLLDQLKAKL >gi|301349844|gb|ADCQ01000006.1| GENE 36 31899 - 32447 537 182 aa, chain + ## HITS:1 COG:RSc3320 KEGG:ns NR:ns ## COG: RSc3320 COG0712 # Protein_GI_number: 17548037 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Ralstonia solanacearum # 1 182 1 177 178 130 44.0 2e-30 MAEISTIARPYAEALLKAVKESKEEGLAQKLIPVLDTIDEIVADPKLKELASDPSLSSDQ IYELIRGMLDKAVPQEAENLLKLVIQNGRIEALPQITAQYRELLNHENKEADVTIETAFP LSDDQVADLIKALDKKFPGIKLLPKVVVDKDLIGGVRVIVGDKVLDGTVKARLAEMQSAL TS >gi|301349844|gb|ADCQ01000006.1| GENE 37 32466 - 34007 2159 513 aa, chain + ## HITS:1 COG:RSc3319 KEGG:ns NR:ns ## COG: RSc3319 COG0056 # Protein_GI_number: 17548036 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Ralstonia solanacearum # 1 513 1 513 513 789 79.0 0 MQLNPSEISELLKQRIEGMGLNTNLRTEGTVVSVTDGICRVHGLSDVMQGEMLEFPNNTY GLALNLERDSVGAVILGDYTHITEGDIVKTTGRILQVPVGPALKGRVVNALGQPIDGKGP IETTEFDVVEKVAPGVIERQSVSQPVQTGLKSIDSMVPIGRGQRELIIGDRQTGKTAVAI DTIINQKGKDLTCIYVAIGQKASTIANVVRKLEEYGALEYTIVVAASASESAAMQYIAPY AGATMGEYFRDRGEDSLIVYDDLTKQAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLER AARVNPEYVERFTKGAVKGKTGSMTALPIIETQAGDVTAFVPTNVISITDGQIFLETDLF NAGIRPAINPGISVSRVGGAAQTKVIKKLGGGVRLALAQYRELAAFAQFASDLDEATRKQ LERGRIVTELMKQDQYQPLQVWEEALVLFAINIGAYDDVEVKDALKVEAAMQDYMKINHA DLIDRIEQQKALSKEDEQLLTEAVKEFKKSGAF >gi|301349844|gb|ADCQ01000006.1| GENE 38 34030 - 34902 912 290 aa, chain + ## HITS:1 COG:RSc3318 KEGG:ns NR:ns ## COG: RSc3318 COG0224 # Protein_GI_number: 17548035 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Ralstonia solanacearum # 1 289 1 291 291 339 64.0 3e-93 MPSTKEIRAKIRSVHNTRKITKAMEMVAASKMKKAQDRMRAARPYGNTIRNLIGHLADAS TEAVHPFLRKVKEVNNIGLICVSTDKGLAGALNTNIQRLLAHTFRDWAQEGKKVEATAIG NKGLGFLQRVGIPVVSQVTQLGDRPNLERLLGAIKVQIEAFQEGRVDVVYIAYSRFINAM KQEPVIEQLLPLPKSAVETDKHENSWDYIYEPSADEVLKVLLKRYVEALIYQAVAENMAS EQSARMVAMKAASDNAKKLIDDLELVYNKTRQAGITKEITEIVGGAAAVS >gi|301349844|gb|ADCQ01000006.1| GENE 39 34932 - 36335 1991 467 aa, chain + ## HITS:1 COG:RSc3317 KEGG:ns NR:ns ## COG: RSc3317 COG0055 # Protein_GI_number: 17548034 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Ralstonia solanacearum # 1 467 1 467 467 786 85.0 0 MSIGKIVQVIGAVVDIEFPRDEMPKVYDALVLEKDENNKLAEEGLTFEVQQQLGDGVVRT IAMGSSEGLQRGMAVKALGHGIMVPVGPKTLGRIMDVLGRPVDEAGEIGEEKRMPIHRAA PKFDELSPSVDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAYGGY SVFAGVGERTREGNDFYHEMGESKVLDKVAMVFGQMNEPPGNRLRVALTGLTMAEAFRDE GRDILLFIDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERIASTKVGSITSI QAVYVPADDLTDPSPATTFGHLDATVVLSRDIAALGIYPAVDPLDSTSRQIDPHIIGEEH YSVTRRVQATLQRYKELRDIIAILGMDELSPEDKLAVTRARKIQRFLSQPFHVAEVFTGQ PGKYVPMKETIRGFKMIVDGECDKLPEQAFYMVGTIDEAFEKAKTIK >gi|301349844|gb|ADCQ01000006.1| GENE 40 36380 - 36793 459 137 aa, chain + ## HITS:1 COG:RSc3316 KEGG:ns NR:ns ## COG: RSc3316 COG0355 # Protein_GI_number: 17548033 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Ralstonia solanacearum # 4 136 3 134 137 128 57.0 2e-30 MEKTLKVDVVNAEESLFSGNAEFVALPGIEGELGILPGHTPLITLIRPGLVRIRKSAQDE EEIFVAGGVLEIQPFHVIVLADVAIRSKDLDEAKAKEAMEKAKAAAKTAASEIELAKVEA EIGMLAEQLRILQRIKH >gi|301349844|gb|ADCQ01000006.1| GENE 41 36903 - 37271 378 122 aa, chain + ## HITS:1 COG:PAE0685 KEGG:ns NR:ns ## COG: PAE0685 COG0589 # Protein_GI_number: 18312103 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Pyrobaculum aerophilum # 2 122 10 133 133 60 37.0 8e-10 MILVSTDGSELSEKAIVTAAKLAKNLNTCVLGITVVKAKGSETAARTLDDVKDACQRVGV PCEVSEVVGTSIPDAILKVAQERDVRFIVMASRGLGTLGSLFIGSSTQQVLAKADRPVLV VR >gi|301349844|gb|ADCQ01000006.1| GENE 42 37515 - 38450 975 311 aa, chain + ## HITS:1 COG:RSc3303 KEGG:ns NR:ns ## COG: RSc3303 COG0407 # Protein_GI_number: 17548020 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Ralstonia solanacearum # 1 311 48 362 364 387 60.0 1e-107 MGLATNPHYACEVTLQPVDRYPLDAAILFSDILTIPDAMGLGLSFVAGEGPKFAKPVQDE AAVKALYVPDPSDKLKYVTDAVCEIKRALNNRIPLIGFSGSPFTLACYMVEGGSSSNYRK VKEMMYRRPDLFNEILEKNTDAVIAYLNAQIESGVDAVMVFDTWGGTLSHEAYLKFSLPC LKRIVNSVKRERHGQKIPSIVFTKGCAPWVKEISEIGADAMGLDWTVSLGEVRALTQDKV ALQGNLDPSVLFAGEDVVRQEARKVIEDFGHVGNGGHVFNLGHGIDKDTDPEVVAALVDE VHSYSRKFHSR >gi|301349844|gb|ADCQ01000006.1| GENE 43 38600 - 40603 573 667 aa, chain + ## HITS:1 COG:RSc3302 KEGG:ns NR:ns ## COG: RSc3302 COG1198 # Protein_GI_number: 17548019 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Ralstonia solanacearum # 154 665 244 766 768 496 48.0 1e-140 MAKRIANVIVDSPIRESLDYLVPADIEIQVGQRCLVPLGTRKVVGIVVGFSEESRFSKLR EVISRVDDIAPLSFGWLALTSFAARYYQSGWGQVAIPALPKFFRKLPGKLHERSLERLRK EKKRAVKEPSEKPHLNSEQSAIVEEFQMDGAFYPALIFGITGSGKTEVYLHLMEKVLLSD PAAQVLLMVPEINLTPQLVERVQSRFPQLEVVSWNSGMAEGQKASSWLACHEGRARILVG TRLSVFASFKSLKLILVDEEHDPSFKSQEGVRYNARDLALKRASIEKIPIVLGSATPSLE SYKNALEGKFKLFKLTQRANSNAHLPELSLVDIRKDKPVNGLSQETADAITETINSGRQV IVFLNRRGFAPVVECKNCGWQSTCPHCSTYAVFHKTTGRLTCHYCGWSTPLPKTCPKCGS YELLPIGRGTQRAEEELETRWPEARVSRLDQDSARQRGSASKVLDAVHNGDVDILIGTQI VAKGHDFKNVGLVVVLNTDPQLFSSDYRARERLFSVLMQVSGRAGRDKTEGKVLIQTRYT EDDIFKHLKSQDYEGFAAGELEARRASFMVPFSAQALLVAEGKEISSVLAFLQKLKALAE KIKGPSVRIFEPVPLTVQKVMDIERGQLLIEADNKVEMQKFLNRFQPEALSLKAKGSWYI DVDPLNY >gi|301349844|gb|ADCQ01000006.1| GENE 44 40605 - 41858 1049 417 aa, chain + ## HITS:1 COG:aq_1015 KEGG:ns NR:ns ## COG: aq_1015 COG0826 # Protein_GI_number: 15606313 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Aquifex aeolicus # 7 416 5 403 409 272 37.0 8e-73 MDRKDFEIMAPVGSRESLAAAFQAGADSVYFGIGTLNMRSKSANEFTIDDLKEIASLCAE RGVKSYLTVNTVIYDEDLPLMRQIVDAAKEAKISAVIASDAAVMMYCKQKGVEVHLSTQL NISNVEALKFYSQFADVVVLARELNLRQVKRIYDEIQQQRITGPKGDLIRIEMFCHGALC MAVSGKCYLSLNNAGKSANRGACMQTCRRAYIVKDKERDVELEIDNQYIMSPKDLKTIGF MDQMIKAGVRVFKIEGRARGPEYVRTVVEAYDQAIRQALTGEWNEEISKAWDAQLATVYN RGFWGGYYLGQTMGEWSNRYGSQATERKIYAGKGIKYFSKAQVAEFLVQAAELNAGDKLL ITGPTTGAVYATLDNPYVDEKPVERVLKGEHVTFKLKEKIRENDKLYILKSVVNEEL >gi|301349844|gb|ADCQ01000006.1| GENE 45 42079 - 42489 385 136 aa, chain + ## HITS:1 COG:RSc0457 KEGG:ns NR:ns ## COG: RSc0457 COG3536 # Protein_GI_number: 17545176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 4 115 11 123 138 129 54.0 2e-30 MKLPTSIELKKKSRLLAIEYGSDRYELPFEFLRVFSPSAEVQGHTPDQAKLQVGKRDVDV LEILPIGSYALQIKFSDGHDSGIYSYDYLEELGKNKDSLWQAYLEDLKAAGASRDPNDPA NKRFEEPPKKKCPSHH >gi|301349844|gb|ADCQ01000006.1| GENE 46 42491 - 43255 313 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 34 253 1 221 221 125 32 6e-28 MNEQNQKENRAEKLTDFGFSKVKEADKEKQVKAVFDQVAPKYDLMNDVLSFGMHRLWKQY AIDRAEIQPGMKVLDIAGGTGDMSLLVQKKLSGTGEVWLSDINHEMLKIGDERLKNAGYH PYVLTCDAEYLPFPDGYFDVLIVSFGLRNMTHKDRALREMQRVLKPGGRLMVLEFSKPVA LMRPFYDFYSFKVMPFLSAKIAGHSENYRYLAESIRMHPDQKTLAKIMREAGFERVEWKN LTFGITALHIGYKN >gi|301349844|gb|ADCQ01000006.1| GENE 47 43269 - 44201 1227 310 aa, chain + ## HITS:1 COG:RSc0459 KEGG:ns NR:ns ## COG: RSc0459 COG4395 # Protein_GI_number: 17545178 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 186 309 228 354 356 103 42.0 5e-22 MKKFLAALLIGLSLVSITLDASAARLGGGASFGRSMSVPKAAPSTPFKAPSAAATKRPAT AAAAGAAAKAPMSMGKRLLIGAAAALGFMALANMLGLGEGFAQMLMILTLILLAVVAFRF FAARKSGASAAASAGAPASQPTQDADFGQSRSEAAVREQPAFNPAQAVRPGSAMDQFSDE PAAASESTYGAPADFNQEEFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFIELTHKRR EIKGVNLTEIVNLNASLAGFETTPTEYVASVLFTGSLKENGEPTEIKEIWNLVKPKEGKT GWLLAGIQQA >gi|301349844|gb|ADCQ01000006.1| GENE 48 44348 - 45811 1568 487 aa, chain + ## HITS:1 COG:RSc0463 KEGG:ns NR:ns ## COG: RSc0463 COG0591 # Protein_GI_number: 17545182 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Ralstonia solanacearum # 3 464 2 463 479 388 49.0 1e-107 MKLTLFVGLYLLCTVAIGLFAATRVRSTTDYALAGRSLPLVMVITATFATWFGSETVLGL PGQFIKNGLEGVVEEPFGSSMALILVGMFFARKLYRMSLLTIGDFYRRRYGVSVELCCSI FVVLSYLGWVAAQVAALGLVIHLLTEGYVSVSNAMIVGTIVVLIYTVFGGMWSVALTDFF QMIIIVIGLVLVAYFAGSMAGGPGKVTEYAVQNDLFRILPENNFKSWMFWISAAITMMIG SLPQQDVFQRVMSAKSEKIACYGPILGGSFYLLFAFVPMFIVIAATVGAPELASKLMADA PQEILPTFIKEYMPLWLRIMFFGAVLSAVMSTASATMLAPTTTFVENVLRNLMPLSDQRE LKAMRISLVVFAIGVLTYALLMEGTPIYELAAMAYQFPVIGAFWPLTLGLYWKRSTTLGC WLSIIAGSAVWIVLSFSGLGEEFPALLGGFLAAGLGQVIGSLLPLRANRECVRNWQENKD KYLYIAQ >gi|301349844|gb|ADCQ01000006.1| GENE 49 45829 - 47184 1509 451 aa, chain + ## HITS:1 COG:RSc0177 KEGG:ns NR:ns ## COG: RSc0177 COG1207 # Protein_GI_number: 17544896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Ralstonia solanacearum # 1 451 1 452 455 520 58.0 1e-147 MNIVILAAGLGKRMYSHLPKVLQPVGGKAMLKHVVEAARRLPDAGKIIVVVGHGSEEVKE AMADQPVTFVLQKEQKGTGHAVQQALEAINPDEPTLILYGDVPLISTETLSALEKTAGDG FALLTIDLDNPKGYGRILREDGKVIGIVEEKDASEQQRAIKEVNTGFMVLPSKEMERWLG NLKNDNKQQEYYLTDLVAMAAAEGREIKTFKAQDAWEVEGANSKVQLEGLERAFQLRQAK ELLEKGVRLADKNRIDIRGSLTCGKDVFIDVGCIFEGDVVLGDNVVVGPYCVIKNTKIGD GTVIDAYSHFDQAVVGDTVKIGPFARLRPGTALSDEVHIGNFVEIKKSEIGKGSKVNHLT YIGDTTMGSGVNIGAGTITCNYDGANKFRTVIEDDCFIGSDTQLVAPVKVGKGATVGAGT TVTKDVNDNTLVISRVKQTEIKGWKRPVKKK >gi|301349844|gb|ADCQ01000006.1| GENE 50 47198 - 49024 1864 608 aa, chain + ## HITS:1 COG:RSc0178 KEGG:ns NR:ns ## COG: RSc0178 COG0449 # Protein_GI_number: 17544897 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Ralstonia solanacearum # 1 608 1 612 612 738 60.0 0 MCGIVAGVSYRNIVPILTEGLRRMEYRGYDSCGVAVVDDGQLKRSRTVKRVQDLIRQTEE DEVKGSTGIAHTRWATHGAPEIRNTHPLFSNNQIAVVHNGIIENYAAIKEELIGKGYEFV SQTDTEVIAHLVHYYYKGDLLGAVENVLRRIRGAFALAISCKDEPGRIVAARVAAPLVIA LGENENFVASDPMALAGVTDRYIYLEDGDVADVRQQSAEIYNLQGDQFVRVERPVSVVQG FSQNIALGPYTHYMQKEIFEQPQAISDTLEGVVGISSSIFGHETPAMFKRLKRVLILACG TSYYAGMVAKYWLESLAKVPCDVEIASEYRYRESVPDKDTLVLTISQSGETADTLAALEH AKSLGMDMTMTICNVATSAMVKRTRAHYITRAGVEIGVASTKAFTTQLAALFLMTSAIAK EKGLLSEEEEKARLKDMRHLPEAMRAILEKENEIKEWASVFAQKNNALFLGRGMHYPIAL EGALKLKEISYLHAEGYPAGELKHGPLALVDAEMPVVTVAPNDELLEKLKGNMEEVRARK GELFVFSDQGCNIQPSEGMHVIQLPENYAVLSPILHVIPLQLLAYHTAIAKGTDVDKPRN LAKSVTTE >gi|301349844|gb|ADCQ01000006.1| GENE 51 49242 - 49392 180 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858921|gb|EFL82007.1| ## NR: gi|302858921|gb|EFL82007.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 50 1 50 584 111 100.0 1e-23 MGRPRVYDTPHFCLHTYVRKGHTYVEAYRNEWDPEKKRSRIAQRKYVGAL Prediction of potential genes in microbial genomes Time: Fri May 13 05:27:27 2011 Seq name: gi|301349843|gb|ADCQ01000007.1| Burkholderiales bacterium 1_1_47 cont1.7, whole genome shotgun sequence Length of sequence - 27214 bp Number of predicted genes - 30, with homology - 29 Number of transcription units - 17, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 50 - 262 208 ## gi|302858921|gb|EFL82007.1| transposase, IS4 family protein - Term 222 - 253 -1.0 2 2 Tu 1 . - CDS 299 - 946 715 ## COG2095 Multiple antibiotic transporter - Prom 976 - 1035 3.2 3 3 Tu 1 . - CDS 1101 - 1745 559 ## COG1309 Transcriptional regulator - Prom 1772 - 1831 3.7 + Prom 1671 - 1730 2.7 4 4 Op 1 . + CDS 1816 - 2787 963 ## COG3181 Uncharacterized protein conserved in bacteria 5 4 Op 2 2/0.000 + CDS 2823 - 3677 991 ## COG0447 Dihydroxynaphthoic acid synthase 6 4 Op 3 . + CDS 3691 - 5022 958 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 5028 - 5066 6.1 - Term 5016 - 5054 6.1 7 5 Op 1 7/0.000 - CDS 5080 - 6525 1563 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 6560 - 6619 2.1 - Term 6579 - 6614 1.3 8 5 Op 2 40/0.000 - CDS 6631 - 7905 1008 ## COG0642 Signal transduction histidine kinase 9 5 Op 3 . - CDS 7983 - 8639 716 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 8785 - 8844 3.5 + Prom 8608 - 8667 1.5 10 6 Op 1 . + CDS 8777 - 9211 540 ## COG3671 Predicted membrane protein 11 6 Op 2 . + CDS 9302 - 10240 418 ## PROTEIN SUPPORTED gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 - Term 10240 - 10277 -1.0 12 7 Tu 1 . - CDS 10296 - 10556 211 ## gi|302859907|gb|EFL82984.1| putative cyd operon protein YbgE - Prom 10620 - 10679 2.0 13 8 Op 1 31/0.000 - CDS 10715 - 11857 1272 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 14 8 Op 2 . - CDS 11870 - 13429 1747 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 15 8 Op 3 . - CDS 13429 - 13632 130 ## gi|302859910|gb|EFL82987.1| hypothetical protein HMPREF0189_00064 - Prom 13662 - 13721 4.6 16 9 Tu 1 . - CDS 13736 - 13879 165 ## - Prom 13924 - 13983 3.4 - Term 13950 - 13987 3.8 17 10 Tu 1 . - CDS 14006 - 14854 835 ## gi|302859911|gb|EFL82988.1| arylesterase-related protein - Prom 14887 - 14946 4.5 18 11 Op 1 . - CDS 14981 - 15520 567 ## Pnap_1353 hypothetical protein 19 11 Op 2 . - CDS 15562 - 16806 1024 ## COG0477 Permeases of the major facilitator superfamily - Prom 16926 - 16985 5.2 + Prom 16837 - 16896 3.3 20 12 Tu 1 . + CDS 16924 - 18156 1336 ## COG3633 Na+/serine symporter + Term 18183 - 18222 6.5 - Term 18170 - 18210 4.2 21 13 Tu 1 . - CDS 18229 - 18729 406 ## gi|302859915|gb|EFL82992.1| putative nitrate reductase molybdenum cofactor assembly chaperone - Prom 18767 - 18826 4.5 + Prom 18613 - 18672 2.9 22 14 Tu 1 . + CDS 18891 - 20471 333 ## COG0514 Superfamily II DNA helicase + Term 20690 - 20728 0.4 - Term 20444 - 20478 2.0 23 15 Op 1 2/0.000 - CDS 20514 - 21365 337 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 - Prom 21417 - 21476 3.3 - Term 21476 - 21502 -1.0 24 15 Op 2 3/0.000 - CDS 21519 - 22148 610 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Term 22161 - 22201 7.5 25 15 Op 3 2/0.000 - CDS 22215 - 22757 588 ## COG3087 Cell division protein 26 15 Op 4 . - CDS 22770 - 24515 1561 ## COG0018 Arginyl-tRNA synthetase 27 15 Op 5 . - CDS 24545 - 25333 649 ## COG1469 Uncharacterized conserved protein - Prom 25568 - 25627 4.6 + Prom 25566 - 25625 5.4 28 16 Op 1 . + CDS 25692 - 25997 353 ## gi|302859922|gb|EFL82999.1| hypothetical protein HMPREF0189_00076 29 16 Op 2 . + CDS 26002 - 26367 250 ## gi|302859923|gb|EFL83000.1| hypothetical protein HMPREF0189_00077 + Term 26426 - 26493 30.2 + TRNA 26392 - 26477 72.8 # Tyr GTA 0 0 + TRNA 26603 - 26688 72.8 # Tyr GTA 0 0 + TRNA 26734 - 26807 82.2 # Gly TCC 0 0 + TRNA 26813 - 26887 85.2 # Thr GGT 0 0 + Prom 26813 - 26872 78.7 30 17 Tu 1 . + CDS 26940 - 27212 388 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|301349843|gb|ADCQ01000007.1| GENE 1 50 - 262 208 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858921|gb|EFL82007.1| ## NR: gi|302858921|gb|EFL82007.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 70 515 584 584 146 100.0 3e-34 MLYTVKENEQKLDLDLPGDSLDKAMAMLKGIMAVRPPSKSVWAGRPISKKARDILELLGI NNKFPRNLKD >gi|301349843|gb|ADCQ01000007.1| GENE 2 299 - 946 715 215 aa, chain - ## HITS:1 COG:STM1521 KEGG:ns NR:ns ## COG: STM1521 COG2095 # Protein_GI_number: 16764866 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Salmonella typhimurium LT2 # 22 212 20 217 221 114 36.0 1e-25 MLDSFYLQYLFGGFVSLIVITNPLSKIPLFISLTQGMSLDVRKKQANWSCYYAAAIMLVS LAAGNLLLVFFGISYGALRISGGFVVGIIGYQMLFGSRDQGGAPVVRRDKDDYSFFPIAM PGISGPGTIAVVIGIASEIAELPNVMDMAGAFFMTGVAIVLTCAVTWIVLRSADYISGRL GPSGTAVLTKLMGFLLICIGVQFIGSGIRTFIAGS >gi|301349843|gb|ADCQ01000007.1| GENE 3 1101 - 1745 559 214 aa, chain - ## HITS:1 COG:PA3721 KEGG:ns NR:ns ## COG: PA3721 COG1309 # Protein_GI_number: 15598916 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 14 208 9 204 213 130 36.0 1e-30 MKTEIVPKSNTPKTKRGEDRQKKLLNTAIKVFLEHGYEGASLEKIILDAGGSRSTIYSLY GSKKGLFLACLKSLVEEVYFAYAEHYDESRPWEEELIVFGRVFLTSILDDRAVNTSRLIF SQAAKDPDIGNWYYTEGAELSYLCFAKVLENKLPLSLEELKPLAQHYIEMLKADLYMKRL CGVSVSLNDQIISDEVRLCADIFIKYLKSRMTQT >gi|301349843|gb|ADCQ01000007.1| GENE 4 1816 - 2787 963 323 aa, chain + ## HITS:1 COG:SMa1927 KEGG:ns NR:ns ## COG: SMa1927 COG3181 # Protein_GI_number: 16263511 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 19 317 26 324 330 171 38.0 2e-42 MKRRNFGLSLISLLLMTQAPAFAQEKKEVCLVVPFPPGGGGDNLARSEVEYLSKNLGSTV WIANRPGAGGNIGTSSVVQAAPDGKTFGYVTNGIFCVNPLLYKTTNFDPMKDLIPVGQLS KIGLIMVLNPKAIPGVTDLPSLIKYAKEHPGEVNFASSGVGTTSHLAGQYFAQVTGTKLT HIPHAGGAAALVEVLAGRIPFMIDVSSNVLPHIRKGALKALAVTTPERLTAAPEVPTMKE AGVDGYELYAWDGFVLPKGTPAPVVEKFSNAIKALKNSEDAKQKILKLGAEPVFSGADEF AAFIAAEKPKWNSLVSEIKADSH >gi|301349843|gb|ADCQ01000007.1| GENE 5 2823 - 3677 991 284 aa, chain + ## HITS:1 COG:VC1973 KEGG:ns NR:ns ## COG: VC1973 COG0447 # Protein_GI_number: 15641975 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Vibrio cholerae # 20 284 31 296 296 457 81.0 1e-129 MQPMLDTSHLPRVPEWKRAGDFEDILYEKSEEGIAKITINRPQVRNAFRPLTVREMETAL ADARDDENIGVIILTGQGKDAFCSGGDQKVRGNGGYVGGDGVPRLNVLDFQRQIRTCPKP VIAMVAGWCVGGGHVLHMMCDLTIAADNARFGQTGPRVGSFDGGWGASYMARIVGQKKAR EIWFLCRFYDATEALEMGLVNTVVPYEELEAETVQWCREILANSPIAIRCLKAALNADCD GQAGLQELAGNATLLYYMTEEGKEGKEAFLEKRRPNFKKFPRLP >gi|301349843|gb|ADCQ01000007.1| GENE 6 3691 - 5022 958 443 aa, chain + ## HITS:1 COG:lin1780 KEGG:ns NR:ns ## COG: lin1780 COG0318 # Protein_GI_number: 16800848 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Listeria innocua # 107 433 140 465 469 184 34.0 2e-46 MSIDLDHKLSVLAAAEEVPDAVAVRSNGDCLTYRELAKKVRDILPRLGDARPYPLVARPD LETLIKVFALLERKQPILLLHPGLTEHERNTLLSSVEGLDHHLPEDTAVILFTSGTTGLP KPAILTREALTASAEASRDNIPLSPGDVWQLSISPARIGGFSILTRSLIARSAIALGPKF SPKEYLRRLEVDHVTYSSIVPTMLRMIFDEAPEWRPLKTLKALLVGGAPTSEKLKAEAEE KGIPIILTYGMTETASNVVTTPFAERYQRTSGSGKINKGVQIKSEDGHLFIKGPMLMHGY WGREPLVPGAWFDSGDIGEVDPDGSVRVFARRKDVILSGGENVYPAEVEEALETIPEVKE ALVLGLPDETWGAIVTALLVPKDEQKLPSDAELALRLKPILASYKSPRRIAWVKELPKTK AGKPDRNADNLKEAAFRTLHYKH >gi|301349843|gb|ADCQ01000007.1| GENE 7 5080 - 6525 1563 481 aa, chain - ## HITS:1 COG:RSp1552 KEGG:ns NR:ns ## COG: RSp1552 COG0265 # Protein_GI_number: 17549771 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Ralstonia solanacearum # 46 475 59 489 490 374 49.0 1e-103 MFFNKLLKPAVLTIACAAALTAGSFGNVSFFHEAHAQTSQLSGLPDFTKLVEDNGKAVVS ISTVKKAKRLGPQNGVPDEQLEMLRRFGFPFPFGDFNGPGMTPERRGQGSGFIIDPNGII LTNNHVVDGADEVTVHLTDKREFKAKVIGTDPKTDIAVIKIEGKNLPVVKLGKSDDVKVG EWVAAIGAPFGLDNTVTAGIVSAKSRNLPDEQFVPFIQTDVAVNPGNSGGPLFNMKGEVI GINSQIFSTSGGFMGLSFAIPIDLAVQIKDELMKNGKVSRGRLGILMQQLTPELAKSFNL KDAKGALIAQIEKDGPADKAGLRDGDIVIEYNGKPIVDIRELSQAVASTKPGAKVKVKAM REGKPVNLVIVVGEMPTDGKLNFKKPAASQNNALGANVRPLNDKEKKRVSNGLFVESVYG AAAEAGMRRGDIIISAGGKKIRTEKDLNEVVSKAKGSLAVLVDRNGSREFIPVKLSDEAK K >gi|301349843|gb|ADCQ01000007.1| GENE 8 6631 - 7905 1008 424 aa, chain - ## HITS:1 COG:RSp1553 KEGG:ns NR:ns ## COG: RSp1553 COG0642 # Protein_GI_number: 17549772 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 43 414 68 438 438 239 42.0 9e-63 MYYSVQREVDRLLDDSLREVALSFDNIRSQDVVQLKRRFGNREQSIVVQIYDPISGTVAL SRRMESLPVMDRVGFSDFQLDGKTWRAYTFLNPYGQIVEAAQPRFIRSEIAFQTAKPVLL PLFVMILLVGLVVWVIIGQGFHALNKTTGAIARRSPTSLQPLSMKGMPREIVPLVNALND LLGQLGESIKAQQRFASDAAHELRTPLTALTLQIQLAERAKTDEARAKAFGRLKDGVKRA TRLVTQLLTMARLDPDNRSRPFLPVDMTQLARSVAEDLSPIAEQKHIHLWAVSETPTVVV ANEDALRLLLTNLCDNALRYTPEGGEIRIETLIKDTEASIRVCDNGPGIPEAERERIFER FYRAEGTKTIPGTGLGLAIVRRVAELHGGKPSISEGIGGKGVCFSIDFPICKAAVEDQPP EADE >gi|301349843|gb|ADCQ01000007.1| GENE 9 7983 - 8639 716 218 aa, chain - ## HITS:1 COG:RSp1554 KEGG:ns NR:ns ## COG: RSp1554 COG0745 # Protein_GI_number: 17549773 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Ralstonia solanacearum # 1 216 4 228 246 238 53.0 6e-63 MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN YESLIGSNAIEVHIHHLRKKLSEDSIKTVRGVGYVLET >gi|301349843|gb|ADCQ01000007.1| GENE 10 8777 - 9211 540 144 aa, chain + ## HITS:1 COG:RSc2943 KEGG:ns NR:ns ## COG: RSc2943 COG3671 # Protein_GI_number: 17547662 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 22 142 20 120 124 75 42.0 4e-14 MNDYPIVTDENGVPRAPVPPSLVTVTRVVYALHALSILIGVFTGASIATAFVFGWPSIIA VIINYVERSDVRGTYLDSHFSWQIRTFWYALLWIVIVWILGLALAVFLIGFVIWIVGFVV LGIWVCYRIVYGWMRLSDGRPMPM >gi|301349843|gb|ADCQ01000007.1| GENE 11 9302 - 10240 418 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 [alpha proteobacterium BAL199] # 11 308 10 308 312 165 32 3e-40 MILQNFLLAFPLFFLVGLGFFSAKVNLIDFNVGKGLAKFAFNIAIPCLLFQTIRGASNLP APDWNIGLGYFGSCTLVFLFTFLIGRKSFHLRGDESTVFGMSAIFSNNVQLGIPLAISLL GENCVPSISFIVSLNVFLLWVAVTVGVELSRSREASVWGTCFEGLWRTIKNPVIIGILLG FLSSWTDIGLPGPFEKSLSLLSASATPVALFSVGTGLSRYKLSSHIRLTGASIVLKLFIQ PTTVFFLCLLFGITGIERQAACLLASLPVGVNVYIMAQEFEVIEGPVANALLLTTCLSML TVPLMASLFNFL >gi|301349843|gb|ADCQ01000007.1| GENE 12 10296 - 10556 211 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859907|gb|EFL82984.1| ## NR: gi|302859907|gb|EFL82984.1| putative cyd operon protein YbgE [Burkholderiales bacterium 1_1_47] # 1 86 1 86 86 127 100.0 2e-28 MRILSFLIALSVAAFVIIYPRAIASDMSSVPHGWLVLLLLGMSFCFVYGVGFKARNRFLA FLFSPLVAWTCVGVASFMIFFQTPVA >gi|301349843|gb|ADCQ01000007.1| GENE 13 10715 - 11857 1272 380 aa, chain - ## HITS:1 COG:STM0741 KEGG:ns NR:ns ## COG: STM0741 COG1294 # Protein_GI_number: 16764111 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 3 380 2 379 379 431 58.0 1e-120 MFIDYEILKLIWWLFIGVLLAGFAVMDGQDMGVGTLLPFIGKNDDERRVMINSVAPHWDG NQVWFITGGGAIFAAWPLIYATAFSGFYWAMLLVLFALFFRPVGFDYRSKIANKTWRNSW DWLLFVGSFVPPVVCGVAFGNLLEGVPFHFDDHLRSFYTGSFWALLNPFAILCGLVSIAM IVAQGSNYLVLRSEGVLQQRAKICGQVSSLLFIVLFLLAGVWVYMGIDGFVITSAIDPNM LPNPLNKTVEVQAGAWFKNFSDYPVLWTFPALAVVGALISFLSVSKLKAGVAIVFSSLAE IGTVFTPLVAMFPFLMPSSSNPISSLTIWDCTSSQLTLFTMLIVTLIFLPLVLIYTGWAY KVMSGKLTNKMIQENSKNLY >gi|301349843|gb|ADCQ01000007.1| GENE 14 11870 - 13429 1747 519 aa, chain - ## HITS:1 COG:ECs0768 KEGG:ns NR:ns ## COG: ECs0768 COG1271 # Protein_GI_number: 15830022 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Escherichia coli O157:H7 # 5 518 4 516 523 608 60.0 1e-174 MISTELVDLSRLQFAATAMYHYLFVPLTLGLSMLLVAMEACYVVTGKQVYKDMVKFWGKL FGINFALGVTTGITMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGW SRLKKGTHLLCTFLMALGSNLSALWILVANGWMQNPVGATFNYQTMRMEMTNFFDVFLSP WAQAKFFHTVSAGYCTGAAFVLAISAWYMLKGRDMDFAKRSFRIAAVFGLVAAIFTAQQG DESGYLVAQDQPAKIAAMEGLWETEPAPAPMALIAFADPELKKNTFEITIPWLAGILSTR SLDKQIPGLNQIIAENKERITQGVVAVKALEQLRKNPNDAQARATFEEHKKDLGFGLLTK KYQPDTNKVTEAQIQQAANDSIPYSINSMFYAFRIMAGAGVALLLIFGLSVYYSLRRVAA EKRLWLKLVLFAVPLPWIACEAGWFVAEYGRQPWTIWEILPTHLSVSSLSVGSLWGSLGA LVFLYTGLLIVEAWLMVRFAKLGPSSLGTGAYHHEQAAK >gi|301349843|gb|ADCQ01000007.1| GENE 15 13429 - 13632 130 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859910|gb|EFL82987.1| ## NR: gi|302859910|gb|EFL82987.1| hypothetical protein HMPREF0189_00064 [Burkholderiales bacterium 1_1_47] # 1 67 1 67 67 120 100.0 3e-26 MAVKNSDRSSERLGIKLAVVIGCKIALITVIFFLFFGPETKTDQSAEAVSARFLNTPSVV NTVQGQK >gi|301349843|gb|ADCQ01000007.1| GENE 16 13736 - 13879 165 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEQKEKKKLWKWLVVAVALIFFAFMAILPFAWEDGDGVPAPNPTIEN >gi|301349843|gb|ADCQ01000007.1| GENE 17 14006 - 14854 835 282 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859911|gb|EFL82988.1| ## NR: gi|302859911|gb|EFL82988.1| arylesterase-related protein [Burkholderiales bacterium 1_1_47] # 1 282 1 282 282 325 100.0 2e-87 MSPTATTVGGYLRDLPADRRVAMARVCSMIRRSARGVRESMRYGLAFYELQGPLFALEST EKRMILFIAEPSVLENYKSLLTGVLEDRSAIEFIDLNRIPLDSLEKIVRDSVAARRERLK TGKAPTQKELLVLWKINEEDAKAPPPVVRIPMKEEVTEETVVEAVPEEPKEPVEILRAPT FKDPAMTASSRPRVKKAATEEKPVKRTRAKAAKDDSAAPKKATAAKKTTTKKSSAKEEPA SAGDESKKAAAPKKAAAAKKTAVKKASARKTAAKKTTEKAEA >gi|301349843|gb|ADCQ01000007.1| GENE 18 14981 - 15520 567 179 aa, chain - ## HITS:1 COG:no KEGG:Pnap_1353 NR:ns ## KEGG: Pnap_1353 # Name: not_defined # Def: hypothetical protein # Organism: P.naphthalenivorans # Pathway: not_defined # 40 179 54 194 196 82 34.0 9e-15 MKNRLSFALLAASALALAGCSSINTALNTSKQPSMEKLTPPSGQAFLTLEGSGIQIFRCA TDAKGTYWRFEQPQAKLKDKSGEAVAELSGPMSAFEYKDGSRIISSHIIAWADPANPQKD NKYALMKAVSDPGTGVFNGVKYIQRLKPEGGMPNSSGCTPSEAGKLLKVPFSAEYVFWK >gi|301349843|gb|ADCQ01000007.1| GENE 19 15562 - 16806 1024 414 aa, chain - ## HITS:1 COG:DR0472 KEGG:ns NR:ns ## COG: DR0472 COG0477 # Protein_GI_number: 15805499 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Deinococcus radiodurans # 10 371 13 372 407 257 43.0 3e-68 MKNTAAGVPFILICVLLDILGIGLIIPVLPQLVGDLAGSQSAQAWWLGAMLVAYGLMQFC FAPTLGALSDRYGRRPVLLLGIFGLGIMFLVPALSQSLPVILFSRILGGMFAGNIAVAQA YISDVTDKAHRAAAFGKLGACFGIGFILGPALGGILGENDVRLPFFIAGCLSLLNFLYGI FVLPESLKTREHRAINFKTLNPLSSLARLTKFKYIGALIAVIALSGFAQSMLHSTWTLFT NFRFHWTPFNIGLSLVVMGLVTAVVQGFLLKKLLKLFGEQKLILYGLGSGALAYLCFGLV TYGPLTYLVMLCNFLSIAVPPTLNSIVSHSVPASEQGEAMGTISSVNSLMGVAAPLLGTP LLVHTAAQSPGSMLGGLPYFICALVLALAAFIASRHFTSVTTADPNKGNGDKEP >gi|301349843|gb|ADCQ01000007.1| GENE 20 16924 - 18156 1336 410 aa, chain + ## HITS:1 COG:VCA0036 KEGG:ns NR:ns ## COG: VCA0036 COG3633 # Protein_GI_number: 15600807 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Vibrio cholerae # 7 404 6 404 405 431 63.0 1e-120 MKRTIPFLITLIKQGSLVKQIIAGLVLGILVALAFPGFAQGCGVLGSFFVSALKAVAPVL VFVLVAASIANQESTTNTAMKDVIVLYLVGTFLAALVAVFASFLFPTQIALIDTKDALSA PGGIGEVVKNLIFNIVDNPVKAIANANYIGILAWSISLGVALRYASDETKRIVTDLTASV EYVVRFVIRLAPIGVFGLVAEVVATTGLAGMMSYVRLLAVLIGCMIFIALIVNPLLVFLY THKNPYPLVWACLRESGVTAFFTRSSAANIPVNMNLCRKLGLDEKLYSLSIPIGATINMG GAAVTITVLTLSAAYTLGVQVDVLTALLLSVVAAVCACGASGVPGGSLLLIPLACGLFGI DQNVAMQVVAVGFVIGVLQDSAETALNSSTDVVFTAAAFEHHRRKSQSHV >gi|301349843|gb|ADCQ01000007.1| GENE 21 18229 - 18729 406 166 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859915|gb|EFL82992.1| ## NR: gi|302859915|gb|EFL82992.1| putative nitrate reductase molybdenum cofactor assembly chaperone [Burkholderiales bacterium 1_1_47] # 1 166 13 178 178 292 100.0 4e-78 MTTELSALARLLVYPRHQTLNELNKIDHILQNSRRLDPHTKENLKTFTVALSAAPMSALQ NIYLASFEEDYKTLDLTQQNHESAEALKLLENLYHEHGQDFSEKDVPHFLPAILEFLSTV SYNEALSWIKQAEPALRAIDRKLLDVSSPWLAVTDSLLSLSKRVAA >gi|301349843|gb|ADCQ01000007.1| GENE 22 18891 - 20471 333 526 aa, chain + ## HITS:1 COG:XF1381 KEGG:ns NR:ns ## COG: XF1381 COG0514 # Protein_GI_number: 15837982 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Xylella fastidiosa 9a5c # 1 505 26 542 645 451 45.0 1e-126 MPKETKVTQKCRETLKSVFGHEDYREGQEAIIEALLEGRDVLALLPTGAGKSLCFQLPAL VKNGMAVVFEPLISLMKDQVDALKKKNVAAAYLSSNMEWDEISSTVELIRDEKIKILYVS PERLSNPSFCRLLEDSCVSLFAYDEAHCVSSWGHDFRPEYRLLSALKERFPSVPRIALTA TADAISSRDICEKLLVEPYVHAMSLERKNLRITVVRRKRGNEQLLAFIKEKHAGESGIVY TSSRAKAETICAFLAAEGINCLCYHAGLSREQRELSQTRFLHEKDAVIVATIAFGMGIDK ADVRFVAHTFLPKSIENYVQEIGRAGRDGQKAEAWLCFSGGDAFFQKKRIAESDAEDWYK NISEVKQDVMQGYAESTECRRNLLLAYFGEETKEACGQCDNCLASEKSWDASTAVKKFLS TVWRSYEKSKLYLNAAQVIEILHGIETPFIWQHDFQELSTWKIGTEFSESQLRAVYRYLL LKEAVGVEFSSYNGLFLTDKSRRFLSSLAPVFLSEHGSGQRKSRNY >gi|301349843|gb|ADCQ01000007.1| GENE 23 20514 - 21365 337 283 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 3 243 7 248 259 134 35 6e-31 MNIFLTGASSGIGQALAKEFAANGATLGLVARREDKLKELIAELPNPELHTAIVCDVTDR DRLIEEARKFDEACGGVDIAVACAGISVGVKTQYREDLDVFDKVFDTNVFAMASTFHAFI DPMIKRKRGTLVGIASVAGIRGLPGSEAYCASKSAAITYCESLRVEMQKYGVKVVTISPG FVKTPLTAHNPYKMPFIMEPEAFAKEAVKVIMVGKKYATIPWEMGVLSKILRLIPNWLFD KILASRKQKPRSGTAGTSKAENRPVSEKSPNAVPTVNKTDENK >gi|301349843|gb|ADCQ01000007.1| GENE 24 21519 - 22148 610 209 aa, chain - ## HITS:1 COG:PA5489 KEGG:ns NR:ns ## COG: PA5489 COG0526 # Protein_GI_number: 15600682 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Pseudomonas aeruginosa # 2 209 1 210 211 151 39.0 1e-36 MLRRILLSACLLLPVVGYASAENPVAGQDYTVLKTPVQTQEPKKIEVLTFFAYTCPHCYT YEKDVLPWSEKLPDDVVFRQIPVAWTPKSFHFTKTYYALEAMHKLHPYHEMLFNAVIKER KEFPDLNSIADFFAQNGLNKEEFLKNANSFSTKVKNDRAFKTWQAYEIDGTPANAVNGKY ITAPHMVGTREGAIQVMNYLIEKERAAKK >gi|301349843|gb|ADCQ01000007.1| GENE 25 22215 - 22757 588 180 aa, chain - ## HITS:1 COG:RSc0286 KEGG:ns NR:ns ## COG: RSc0286 COG3087 # Protein_GI_number: 17545005 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Ralstonia solanacearum # 10 178 15 234 238 69 27.0 3e-12 MARNSGGGFGTWFYGFLVGGVIGVGCCAAAALYITKAPIPFVNKVNQASEKINPIAGGTI PDPNKPLSASGGAPVNAPKSRVVTVEPPTSEQAAEETKLQIEQGSRFVVQAGAFSTQVDA EARRAELGFLGFEARVIPRTDGAKTLYRVRLGPYGTAQEANDVKSKLQANSITATVGRVK >gi|301349843|gb|ADCQ01000007.1| GENE 26 22770 - 24515 1561 581 aa, chain - ## HITS:1 COG:RSc0287 KEGG:ns NR:ns ## COG: RSc0287 COG0018 # Protein_GI_number: 17545006 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 570 1 600 600 604 52.0 1e-172 MLASQKTKITELFKNALAAVGAPENTKIVLERPKQQSHGDIACTVALQCAKAMKQPPRVI AEKLVEELRKETADSEMFSAIEIAGPGFINLKLAPFLKQDVVREILKEGPAYGCSDAHTG ESILLEYVSANPTGPLHLGHARQGALGDVLSRMLKSQGWAVTREFYYNDAGNQIHNLAIS VQARCYELQNKPFEFPEDGYKGAYVLDIAQDFLAKEPIHTFDGKVVESSGNPDDLENIRA YAVAYLREEQHKDLTALGVAFDNYYLESSLYSDGRVAKAVQAIRNAGKTYEKDRALWFKS TDYGDDKDRVMRKADGSYTYFVPDVAYHLAKFERGFNRALNIQGSDHHGTVARVRAGIQA ASGDFGFNIPKTFPEYMLHKMLQVVKDGQPVKMSKRSGTYVTLSDLVNWVGKDAARLFMV NRRADAEFVFDVDLALSQSDENPVYYLQYAHARICSVFAQAQEKGIEVPSVEEMASEDLS SLTAPTELRLMSKLSDFPTALANGTEDLSPLALVTYLKELAADFHSFYNAERVLVDDEKL RNARLALLVATRQVLRNGLEILGVSAPERLSRADQPADSTK >gi|301349843|gb|ADCQ01000007.1| GENE 27 24545 - 25333 649 262 aa, chain - ## HITS:1 COG:RSc2220 KEGG:ns NR:ns ## COG: RSc2220 COG1469 # Protein_GI_number: 17546939 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 2 261 9 268 268 290 55.0 2e-78 MVLPDVQSSADRRNIPIRRVGVKGIRTPILVKSQSGAQHTVADVEMYVSLPADKKGTHMS RFWTLLGGINKPFAPQMMVEVMQEMLASLKSDGGYIRLAFPFFMEKSAPVSHLQSTMDYD VVLTAECADGKITVTQEVIAPVTSLCPCSKEISKYGAHNQRSHVSITAELKTNFPIEKQI EMIESCASCQVWGLLKRSDEKYVTEHAYENPKFVEDLVRDVAIRCQDEPAILAFTVEAEN FESIHNHSAFASLHFDKRQTAE >gi|301349843|gb|ADCQ01000007.1| GENE 28 25692 - 25997 353 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859922|gb|EFL82999.1| ## NR: gi|302859922|gb|EFL82999.1| hypothetical protein HMPREF0189_00076 [Burkholderiales bacterium 1_1_47] # 1 101 1 101 101 196 100.0 4e-49 MRYPISKLIWAGLIIALIFLGAMFILPVVGAVLIGVFALSCLIWLSSKVFGFFQGGRTYT EDNPGDYYDASARTSIVPKKWNKTQAVDAEVIEVEEIKKEK >gi|301349843|gb|ADCQ01000007.1| GENE 29 26002 - 26367 250 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859923|gb|EFL83000.1| ## NR: gi|302859923|gb|EFL83000.1| hypothetical protein HMPREF0189_00077 [Burkholderiales bacterium 1_1_47] # 1 121 1 121 121 234 100.0 9e-61 MPGIQQPTKTPISESKIAVFWRTALYLFSAGMMGKAAAGFSDGYVAEAVGDLGLSLVFIG MCFRSTELAILAYISDPAKREAAIEKLRQKERAKRPWISHLMNAGWICLLAGVAGQLSNI F >gi|301349843|gb|ADCQ01000007.1| GENE 30 26940 - 27212 388 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 91 1 91 407 154 79 8e-37 MAKEKYERTKPHVNVGTIGHVDHGKTTLTAAITTVLSKKFGGEAKAYDQIDAAPEEKARG ITINTAHVEYETESRHYAHVDCPGHADYVKN Prediction of potential genes in microbial genomes Time: Fri May 13 05:28:55 2011 Seq name: gi|301349842|gb|ADCQ01000008.1| Burkholderiales bacterium 1_1_47 cont1.8, whole genome shotgun sequence Length of sequence - 16139 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 3, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 14/0.000 + CDS 3 - 293 428 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 393 - 425 4.1 + TRNA 306 - 381 83.3 # Trp CCA 0 0 + Prom 307 - 366 79.3 2 2 Op 1 46/0.000 + CDS 435 - 818 428 ## COG0690 Preprotein translocase subunit SecE 3 2 Op 2 45/0.000 + CDS 831 - 1367 592 ## COG0250 Transcription antiterminator + Term 1376 - 1419 2.1 4 2 Op 3 55/0.000 + CDS 1476 - 1910 692 ## PROTEIN SUPPORTED gi|53720833|ref|YP_109819.1| 50S ribosomal protein L11 5 2 Op 4 43/0.000 + CDS 1910 - 2602 852 ## PROTEIN SUPPORTED gi|224827268|ref|ZP_03700362.1| ribosomal protein L1 + Prom 2765 - 2824 1.7 6 2 Op 5 47/0.000 + CDS 2860 - 3390 574 ## PROTEIN SUPPORTED gi|149925887|ref|ZP_01914150.1| 50S ribosomal protein L10 7 2 Op 6 28/0.000 + CDS 3439 - 3816 482 ## PROTEIN SUPPORTED gi|163859287|ref|YP_001633585.1| 50S ribosomal protein L7/L12 + Term 3832 - 3869 7.1 + Prom 3825 - 3884 2.3 8 2 Op 7 58/0.000 + CDS 4046 - 8179 4014 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 9 2 Op 8 5/0.000 + CDS 8176 - 12423 5318 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 12441 - 12482 9.7 + Prom 12501 - 12560 4.4 10 3 Op 1 56/0.000 + CDS 12713 - 13090 598 ## PROTEIN SUPPORTED gi|161350049|ref|YP_159178.2| 30S ribosomal protein S12 + Term 13138 - 13172 3.0 + Prom 13116 - 13175 4.0 11 3 Op 2 51/0.000 + CDS 13199 - 13672 689 ## PROTEIN SUPPORTED gi|78064920|ref|YP_367689.1| 30S ribosomal protein S7 12 3 Op 3 30/0.000 + CDS 13730 - 15832 2967 ## COG0480 Translation elongation factors (GTPases) 13 3 Op 4 . + CDS 15875 - 16138 373 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|301349842|gb|ADCQ01000008.1| GENE 1 3 - 293 428 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 95 312 406 407 169 83 1e-41 ITPHTEFQAEVYVLTKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIR MDVKLIAPIAMEEGLRFAIREGGHTVGAGVVSKIVG >gi|301349842|gb|ADCQ01000008.1| GENE 2 435 - 818 428 127 aa, chain + ## HITS:1 COG:RSc3040 KEGG:ns NR:ns ## COG: RSc3040 COG0690 # Protein_GI_number: 17547759 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Ralstonia solanacearum # 29 124 28 123 126 91 48.0 4e-19 MSTQNATPATESKGGVLLMTIAILIAVSGVFAFALLAEQPTGIRVGILIGSLVVGVVLGW FSAPGKEFAKYCKASYEELRRVVWPTRKETINTTGIVCAFVVVIAFFLFIVDKLIEFLLY DVLLSLI >gi|301349842|gb|ADCQ01000008.1| GENE 3 831 - 1367 592 178 aa, chain + ## HITS:1 COG:RSc3039 KEGG:ns NR:ns ## COG: RSc3039 COG0250 # Protein_GI_number: 17547758 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Ralstonia solanacearum # 5 177 21 193 194 216 58.0 2e-56 MSDMKWYVVHTYSGMEKSAESALRERIAREGLQDCFEEILVPTEDISEVKNGKKRVSTRR MYSGYIFVKMIMNDETWHLVKNTARITGFLGGSANKPSPLPAKDIEAIKSKMEAGSEAPR PRVEFEVGGSVRIKNGPFTDFNGIIEEVNYDKNRLRVMVSIFGRDTPVELAFNEVEKA >gi|301349842|gb|ADCQ01000008.1| GENE 4 1476 - 1910 692 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|53720833|ref|YP_109819.1| 50S ribosomal protein L11 [Burkholderia pseudomallei K96243] # 1 143 1 143 143 271 92 3e-72 MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGVEPGLPIPVVIT AYADKSFTFVMKTPPATILIKKAAKIQKGSARPHTDKVGKITRAQAEEIAKTKMPDLTAA DMDAAVRTIAGSARSMGITVEGVK >gi|301349842|gb|ADCQ01000008.1| GENE 5 1910 - 2602 852 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224827268|ref|ZP_03700362.1| ribosomal protein L1 [Lutiella nitroferrum 2002] # 1 230 1 230 231 332 72 8e-91 MAKISKREKENKSKVEAQKFYALNEAVELVKALANAKFNESVDIAVQLGIDPRKSDQAVR GSVVMPAGTGKTVRVAVFAQGAAAEAAKEAGADIVGMEDLAHEIKGGKMDFDVVIAEPAA MRVVGQLGQILGPRGLMPNPKVGTVTPNVAQAVKNAKAGQVQFRADKAGIIHAPVGRASF EVEQLLTNIKALIEQLNKIKPASTKGVYIRKVAVSSTMGPGVKVDVQTLN >gi|301349842|gb|ADCQ01000008.1| GENE 6 2860 - 3390 574 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149925887|ref|ZP_01914150.1| 50S ribosomal protein L10 [Limnobacter sp. MED105] # 1 176 1 176 176 225 64 1e-58 MGLNRQEKADMIKEISEIIAGTEGLVIAEYRGLTVDAATKLRKEARENGVQLRVLKNTLA RRAVKDTPFEGLSDQFVGPLLYGFSADPVAPAKVMANFAKTNPQLVIKAGAMPNNVLDVA GVEKLATMPSRDELLAKLMATMNEPVAKFVRTLNEVPARFVRTLAAVRDAKEQAAA >gi|301349842|gb|ADCQ01000008.1| GENE 7 3439 - 3816 482 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163859287|ref|YP_001633585.1| 50S ribosomal protein L7/L12 [Bordetella petrii DSM 12804] # 1 125 1 126 126 190 84 6e-48 MALSKEEILDAIASMSVLEVSELIKMMEEKFGVSAAAAAVAVAAPAGGAAAPAEEKSEFD VVLKEIGANKVQVIKAVRELTGLGLKEAKDLVDGAPKTVKEGLAKADAEEAQKKLEAAGA KVELK >gi|301349842|gb|ADCQ01000008.1| GENE 8 4046 - 8179 4014 1377 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 4 1372 8 1391 1392 1550 57 0.0 MSYSFTEKKRIRKSFAKRPSVLEVPSLLETQLHSYHEFLQADVPAAERRDEGLQGAFKSI FPIVSHNGLARLEFQEYILDDPVFDVSECQLRGLNYCSRLRAKVRLVIFDRDQPKQSTVK EIRESEVYMGEIPLMTKKGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR IIPYRGSWLDFEFDAKDILHFRIDRRRKMPGTIMLKALGMTPESILKQFYEFDHYTLTQD GATLEIIPSRLRGEIAAFDIKDPEGKVIVAKDKRINARHVREIEKLGITELPVPLDNLIG KVIATNLYDEDSGEVVANANDEITPELLEKIREHGIDSFDTLYINELNRGPYISDTLRLD ETPDQLSARIAIYRMMRPGEPPTEEAVETLFRRLFFDPETYDLSRVGRMKINSRFNRGTE TGPMTLEPEDIIDTMKAIVQLRNGEGQVDDIDHLGNRRVRCVGELTENQFRSGLVRVERA VRERLGQAESDNLMPHDLINSKPISAAIRDFFGSSQLSQFMDQTNPLSEITHKRRISALG PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNDYGFLETPYRKV IDGHVTNEIAYLSAIDEGNYIIAQANASIDDKGNLSDELVSCRDKGEFVLMRPERVQYMD VAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQGVPCLRPEKPVVGTGIERTVAVDSGT TVQAERGGVVDYVDANRIVVRVNDEENVPGRVGVDIYNLQKFTRSNQGTNINQRPIVNPG DHIAKGDVIADGASTDLGELALGQNMIVAFMPWNGYNYEDSVMVSEKVVADDRYSSIHIE ELSVQARDTKLGSEEITRDISNLSENQINRLDESGIVYIGAEVKAGDVLVGKVTPKGETT LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIERDKRAQSIIDDELK RYRTNLNDQLRIVERDAFERLARQLIGNVAQGGPDGLGKGKKVTKEYLDGLNVHKWFDIR MADEELQKQIEEVRISLEAKRKEFDEAWNEKRKKLTQGDELPTGVQKMVKVYLAVKRRLQ PGDKMAGRHGNKGVVSRITRVEDMPFMADGRPVDIVLNPLGVPSRMNIGQVLEVHLGWAA FGLGWRIAEMLKHERSKQVAEIREFLNTIYNKSSGKKEDFDSLTDDEIIDLAKHLKKGVP FATPVFDGASESDIREMLNLAFPEETAKKLHLTPSKTQAQLFDGRTGDAFDRPVTVGVMH YLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEML TVKSDDVTGRTKLYENIVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRDKESSKK >gi|301349842|gb|ADCQ01000008.1| GENE 9 8176 - 12423 5318 1415 aa, chain + ## HITS:1 COG:RSc3033 KEGG:ns NR:ns ## COG: RSc3033 COG0086 # Protein_GI_number: 17547752 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Ralstonia solanacearum # 2 1374 1 1379 1409 2133 77.0 0 MMKAFNSLFKTNKENEPFDAIKIGIASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCA KIFGPIKDYECLCGKYKRLKHQGIVCEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKS LPSRMGMVLDIPLRDIERVLYFEAYIVVDPGMTELRRGQLMTEDDYMAKTEEYGDEFKAM MGAEAIKELLATINIDEEVEDLRRELSETTSEAKVKKIAKRLKVLEGFQRSGIKPEWMVM DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRML QEAVDSLLDNGRRGKAMTGPSKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGP YLKLHQCGLPKLMALELFKPFIFNKLELRGLAPTIKAAKKMVENQDPVVWDILEEVIYEH PVMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE ARSLMLASNNVLFPANGDPSIVPSQDIVLGLYYSTRSRINGKGEGMFFADIGEVERALAN KVVELQTRCTVRVKEFDVNKETGEKTPKLVRYETTVGRALLSEILPPGLPFSVLNKTLKK KEIAKLINMAFRRCGLRETVIFADKLMQRGYHLATIGGLSIAIDDMIVPEQKNEIVHEAE QEVKEIDAQYTSGLVTAGERYNKVVDIWGRTTEKVGKVMMDEISNEPVIDRHGNKTTQES FNSIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFVSTHG ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTHQGVLMKALVEGGEVTESLADR ILGRVTADPVINPDTQEEIFPAGHLLEEDDVELITKLGIDEVKIRTPLTCETRYGLCAKC YGRDLGRGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAVASNVVTKSAGTI RFTSSMRYVTGEKGNKVVISRSGEIVIEGPNGRERERHKIPYGANLLASDGQQVEIGTEL ANWDPMTRPIVTEYAGKVRFANVIDNVTVKSQVDEVTGLSSLVVIDAKHSSSSKIGKPLI QFLDANNEPVKIPGTEHPVSIQLPVGALIIVHDGDEAKVGDVLARIPTESQKTRDITGGL PRVAELFEARSPKDAGILAEASGTVTFGKETKGKQRLIITDTQGQDHEFLIPKDKDILVH DGQVVHQGEVIVDGPADPHDILRLQGIEALARYIVDEVQAVYRLQGVKISDKHIEVIVRQ MLRRVVITDPGDTKFITGEQVERSEMLDENEKALAENKRPATYDNLLLGITKASLSTDSF ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRARHDRDAFKYDN EIETSEAYVGNENIVSDVPAIPEAEVTGESKSYHN >gi|301349842|gb|ADCQ01000008.1| GENE 10 12713 - 13090 598 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161350049|ref|YP_159178.2| 30S ribosomal protein S12 [Aromatoleum aromaticum EbN1] # 1 125 1 125 125 234 92 2e-61 MPTINQLVRKPRERAIEKSKSPALNNCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHVVRGSLDTQGVKDRKQSRSKYGAK RPKQA >gi|301349842|gb|ADCQ01000008.1| GENE 11 13199 - 13672 689 157 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|78064920|ref|YP_367689.1| 30S ribosomal protein S7 [Burkholderia sp. 383] # 1 156 1 156 156 270 85 6e-72 MPRRREVPKREVLPDPKFGSVEITKFVNMIMLDGKKAVAERIVYGALEEIQNKSGKDPLE VFTNALNNVRPLVEVKSRRVGGANYQVPVEVRPVRRMALAMRWLREAAKGRSEKSMPLRL AGELIDASEGRGGAMKKREEVHRMAEANKAFSHFRFN >gi|301349842|gb|ADCQ01000008.1| GENE 12 13730 - 15832 2967 700 aa, chain + ## HITS:1 COG:RSc3022 KEGG:ns NR:ns ## COG: RSc3022 COG0480 # Protein_GI_number: 17547741 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Ralstonia solanacearum # 1 698 1 700 703 1146 81.0 0 MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG ITITSAATTAFWRGMDMNHPEHRINIIDTPGHVDFTVEVERSMRVLDGACMVYCAVGGVQ PQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMKTRLKANPVPIVIPIGAEDTFK GVIDLAKRKAIIWDEASQGMKFKFEDVPAELVEETEKWRSNMVEAAAEANEELMDKYLND GDLSEADINKGLRLRTIANEIQPMLCGTAFKNKGVQRMLDAVIELLPSPVDIPPVQGVDP DDDSVASRKADDKEPFSALAFKIMTDPFVGQLTFLRVYSGVVNSGDTVLNSVKGKKERIG RLLQMHANERKEIKEVLAGDIAAAVGLKEVTTGDTLCAIDHPIILEKMEFPEPVISQAVE PKTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLDILVDRMRREFNVEA TVGKPQVAYRETIRSTVENAEAKFVKQSGGRGQYGHVVLKLEPNPGKGYEFVDAIKGGVV PREYIPAVQKGIEDTMKSGVLAGYPVVDVKATLHFGSYHEVDSNENAFKMAGSMAFKEGM RNASPVLLEPIMAVEVETPEEKMGDVMGDLSSRRGVIQGMDDLPGGGKAVKAEVPLSEMF GYATQLRSLTQGRASYTMEFKHYAEAPKNVAEAVIEAKTK >gi|301349842|gb|ADCQ01000008.1| GENE 13 15875 - 16138 373 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 88 1 88 407 148 78 3e-35 MAKEKYERTKPHVNVGTIGHVDHGKTTLTAAITTVLSKKFGGEAKAYDQIDAAPEEKARG ITINTAHVEYETESRHYAHVDCPGHADY Prediction of potential genes in microbial genomes Time: Fri May 13 05:31:01 2011 Seq name: gi|301349841|gb|ADCQ01000009.1| Burkholderiales bacterium 1_1_47 cont1.9, whole genome shotgun sequence Length of sequence - 33793 bp Number of predicted genes - 46, with homology - 46 Number of transcription units - 13, operones - 9 average op.length - 4.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 16/0.000 + CDS 1 - 288 425 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 306 - 344 5.7 2 1 Op 2 . + CDS 352 - 663 489 ## PROTEIN SUPPORTED gi|91785466|ref|YP_560672.1| 30S ribosomal protein S10 + Term 685 - 726 4.1 - Term 720 - 762 7.0 3 2 Tu 1 . - CDS 782 - 1861 1223 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - Prom 1891 - 1950 4.2 + Prom 2181 - 2240 4.2 4 3 Op 1 58/0.000 + CDS 2307 - 2969 736 ## PROTEIN SUPPORTED gi|237747365|ref|ZP_04577845.1| 50S ribosomal protein L3 5 3 Op 2 61/0.000 + CDS 2980 - 3600 737 ## PROTEIN SUPPORTED gi|171060668|ref|YP_001793017.1| ribosomal protein L4/L1e 6 3 Op 3 61/0.000 + CDS 3597 - 3893 293 ## PROTEIN SUPPORTED gi|163859271|ref|YP_001633569.1| 50S ribosomal protein L23 7 3 Op 4 60/0.000 + CDS 3893 - 4720 1131 ## PROTEIN SUPPORTED gi|119899703|ref|YP_934916.1| 50S ribosomal protein L2 8 3 Op 5 59/0.000 + CDS 4731 - 5015 419 ## PROTEIN SUPPORTED gi|187476543|ref|YP_784567.1| 30S ribosomal protein S19 9 3 Op 6 61/0.000 + CDS 5021 - 5365 430 ## PROTEIN SUPPORTED gi|171060664|ref|YP_001793013.1| ribosomal protein L22 10 3 Op 7 50/0.000 + CDS 5376 - 6170 982 ## PROTEIN SUPPORTED gi|113869425|ref|YP_727914.1| 30S ribosomal protein S3 11 3 Op 8 . + CDS 6173 - 6589 606 ## PROTEIN SUPPORTED gi|119899699|ref|YP_934912.1| 50S ribosomal protein L16 12 3 Op 9 . + CDS 6602 - 6796 203 ## PROTEIN SUPPORTED gi|53720813|ref|YP_109799.1| 50S ribosomal protein L29 13 3 Op 10 50/0.000 + CDS 6793 - 7050 298 ## PROTEIN SUPPORTED gi|91774644|ref|YP_544400.1| SSU ribosomal protein S17P + Term 7081 - 7145 4.2 + Prom 7067 - 7126 6.0 14 4 Op 1 57/0.000 + CDS 7324 - 7692 569 ## PROTEIN SUPPORTED gi|56477604|ref|YP_159193.1| 50S ribosomal protein L14 15 4 Op 2 48/0.000 + CDS 7706 - 8026 370 ## PROTEIN SUPPORTED gi|163859260|ref|YP_001633558.1| 50S ribosomal protein L24 16 4 Op 3 50/0.000 + CDS 8041 - 8580 768 ## PROTEIN SUPPORTED gi|149928562|ref|ZP_01916788.1| 50S ribosomal protein L5 17 4 Op 4 50/0.000 + CDS 8595 - 8900 362 ## PROTEIN SUPPORTED gi|15676082|ref|NP_273213.1| 30S ribosomal protein S14 18 4 Op 5 55/0.000 + CDS 8917 - 9312 535 ## PROTEIN SUPPORTED gi|121603249|ref|YP_980578.1| ribosomal protein S8 19 4 Op 6 46/0.000 + CDS 9329 - 9862 609 ## PROTEIN SUPPORTED gi|152980508|ref|YP_001355086.1| large subunit ribosomal protein L6 20 4 Op 7 56/0.000 + CDS 9880 - 10248 392 ## PROTEIN SUPPORTED gi|221064820|ref|ZP_03540925.1| ribosomal protein L18 21 4 Op 8 50/0.000 + CDS 10260 - 10778 686 ## PROTEIN SUPPORTED gi|83748166|ref|ZP_00945193.1| SSU ribosomal protein S5P 22 4 Op 9 48/0.000 + CDS 10796 - 10975 191 ## PROTEIN SUPPORTED gi|119478113|ref|ZP_01618192.1| ribosomal protein L30 23 4 Op 10 53/0.000 + CDS 10990 - 11436 514 ## PROTEIN SUPPORTED gi|241664513|ref|YP_002982873.1| ribosomal protein L15 24 4 Op 11 . + CDS 11457 - 12785 1325 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 + Term 12812 - 12862 9.1 + Prom 12789 - 12848 4.2 25 5 Op 1 . + CDS 12938 - 13051 180 ## PROTEIN SUPPORTED gi|149926588|ref|ZP_01914848.1| 30S ribosomal protein S13 26 5 Op 2 48/0.000 + CDS 13065 - 13430 508 ## PROTEIN SUPPORTED gi|187476571|ref|YP_784595.1| 30S ribosomal protein S13 27 5 Op 3 36/0.000 + CDS 13445 - 13858 409 ## PROTEIN SUPPORTED gi|239623373|ref|ZP_04666404.1| ribosomal protein S11 28 5 Op 4 26/0.000 + CDS 13926 - 14549 793 ## PROTEIN SUPPORTED gi|149926591|ref|ZP_01914851.1| 30S ribosomal protein S4 + Term 14561 - 14596 6.0 29 5 Op 5 50/0.000 + CDS 14703 - 15743 1325 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit + Prom 15761 - 15820 6.5 30 5 Op 6 . + CDS 15906 - 16307 507 ## PROTEIN SUPPORTED gi|91786412|ref|YP_547364.1| 50S ribosomal protein L17P + Term 16333 - 16363 3.0 31 5 Op 7 . + CDS 16381 - 16815 246 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) + Term 16883 - 16923 3.1 - Term 16871 - 16910 3.4 32 6 Op 1 1/0.000 - CDS 16952 - 17965 1163 ## COG0113 Delta-aminolevulinic acid dehydratase - Term 17982 - 18019 4.0 33 6 Op 2 . - CDS 18043 - 18684 364 ## COG0218 Predicted GTPase - Term 18705 - 18755 12.7 34 7 Tu 1 . - CDS 18757 - 19884 1054 ## COG2326 Uncharacterized conserved protein - Prom 19913 - 19972 3.3 - Term 19966 - 19993 -0.8 35 8 Op 1 . - CDS 20014 - 21120 1073 ## COG0516 IMP dehydrogenase/GMP reductase 36 8 Op 2 . - CDS 21322 - 24444 1608 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 24631 - 24690 12.8 - Term 25162 - 25196 4.1 37 9 Op 1 . - CDS 25200 - 26513 1006 ## COG0019 Diaminopimelate decarboxylase 38 9 Op 2 . - CDS 26540 - 26869 298 ## gi|302859976|gb|EFL83053.1| conserved hypothetical protein - Prom 26930 - 26989 3.1 39 10 Op 1 . + CDS 26832 - 27161 359 ## COG1965 Protein implicated in iron transport, frataxin homolog 40 10 Op 2 9/0.000 + CDS 27163 - 28011 525 ## COG0294 Dihydropteroate synthase and related enzymes 41 10 Op 3 . + CDS 28008 - 29345 1513 ## COG1109 Phosphomannomutase 42 10 Op 4 . + CDS 29355 - 30047 473 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 30183 - 30242 2.6 43 11 Op 1 5/0.000 + CDS 30396 - 30848 226 ## COG3547 Transposase and inactivated derivatives + Prom 30886 - 30945 2.2 44 11 Op 2 . + CDS 30980 - 31435 196 ## COG3547 Transposase and inactivated derivatives 45 12 Tu 1 . + CDS 31828 - 32925 816 ## COG0642 Signal transduction histidine kinase + Term 33091 - 33132 -0.2 + TRNA 33151 - 33227 86.2 # Pro TGG 0 0 + TRNA 33258 - 33334 92.9 # Arg TCT 0 0 + TRNA 33346 - 33421 76.4 # His GTG 0 0 - Term 33245 - 33314 30.5 46 13 Tu 1 . - CDS 33551 - 33793 245 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349841|gb|ADCQ01000009.1| GENE 1 1 - 288 425 95 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 2 94 314 406 407 168 84 5e-41 TPHTEFQAEVYVLTKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIRM DVKLIAPIAMEEGLRFAIREGGHTVGAGVVSKIVG >gi|301349841|gb|ADCQ01000009.1| GENE 2 352 - 663 489 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|91785466|ref|YP_560672.1| 30S ribosomal protein S10 [Burkholderia xenovorans LB400] # 1 103 1 103 103 192 91 2e-48 MQSQRIRIRLKAFDYKLIDQSALEIVDTGKRTGAVVRGPIPLPTRIQRFDILRSPHVNKT SRDQLEIRTHQRLMDIIDPTDKTVDALMKLDLPAGVDVEIKVQ >gi|301349841|gb|ADCQ01000009.1| GENE 3 782 - 1861 1223 359 aa, chain - ## HITS:1 COG:CAC2766 KEGG:ns NR:ns ## COG: CAC2766 COG1477 # Protein_GI_number: 15896021 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Clostridium acetobutylicum # 25 338 4 313 319 191 36.0 1e-48 MQSKKIILSLIAALAFTAGPATASDVYSVDTFAIGTLINGQFKVDSKEKAEACYKILNDE TRRLEYILSAYDPDSDVTRLNQHPGEWIQIEPETFEVLNGSKTIAALTHGTFDPTVGALV KLWSVDQPEHRVPSEAEIKRALINVDYNLIDAKKENGRYFGKIGKKQSVAFGAIGKGYIA DKVINKLKQGGCGDSLVSLGGNVIGSGTNGSDKPWSIGLQRPDKERGEYFAVVPLKDTSV VTSGDYEKFFIKDGVKYHHILNPKTGKPVPATLSSVTIIDDNSAKADALCTALFVMGWSG AIEYLQKHPDLKAVLLSEDLKHVAMTNSASKIVNIIDKDMTVDIIPPKGKIAFADLKQK >gi|301349841|gb|ADCQ01000009.1| GENE 4 2307 - 2969 736 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|237747365|ref|ZP_04577845.1| 50S ribosomal protein L3 [Oxalobacter formigenes HOxBLS] # 1 219 1 217 222 288 63 4e-77 MEIIMSEKLGLVGRKIGMTRIFTEDGVSIPVTVLEVSNNRITQVKTVETDGYNAVQVAFG SKKPSRVSKPLKGQFEKAGVEAGSMLKEFHVEEDKIGEMKVGQTLSIDMFSEGQKVDVTG TTIGKGFAGAIKRHHFSSNRASHGNSVSTNAPGSIGNRQDPGRVFPGKRMAGHLGDVQRT TQNLVIARVDADRQLILVRGAVPGCANGEVIIRPAVKAKA >gi|301349841|gb|ADCQ01000009.1| GENE 5 2980 - 3600 737 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|171060668|ref|YP_001793017.1| ribosomal protein L4/L1e [Leptothrix cholodnii SP-6] # 1 205 1 205 206 288 69 3e-77 MELKVVNDQGQQTATLAAADTVFGREYNEALVHQIVVAYQANARLGTRAQLTREAVHHST RKPWRQKGTGRARAGMSSSPVWRGGGRAFPNTPDENFTQKVNKKMMRGAMACILSKLAID GRLVVVENIDVDTPKTKNFANKLKAMGLNSALIITDEISENLDLASRNLKNVWVVEPRYA DPVSLVHFDSVVVTKAAISKLEEMWG >gi|301349841|gb|ADCQ01000009.1| GENE 6 3597 - 3893 293 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163859271|ref|YP_001633569.1| 50S ribosomal protein L23 [Bordetella petrii DSM 12804] # 1 98 1 98 98 117 61 1e-25 MSQDFLYKAILGSIVSEKSTRIGEKNNQYVFRVVPEATKEDVKAAVELLFKVKVKGVQML NLKGKQKRNGRFPGKRNDVRKAYVCLEEGQEINFAEVK >gi|301349841|gb|ADCQ01000009.1| GENE 7 3893 - 4720 1131 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119899703|ref|YP_934916.1| 50S ribosomal protein L2 [Azoarcus sp. BH72] # 1 275 1 275 275 440 76 1e-123 MALIKLKPTSAGRRHAVKVVNPELHKGKPFAALVEKKNRGSGRNNFGRITVRHQGGGHKK AYRIIDFKRDKDGIPAIVERLEYDPNRSANIALVLYKDGERRYIIAPKGLKAGDEIMSGQ EAPIKIGNALPLRNIPVGSTIHNIEMKPGKGAQMVRAAGAFAQLLAREGAYAQIRLRSGE VRRILIECRATIGTVGNEENSLRELGKAGAKRWRGIRPTVRGVVMNPVDHPHGGGEGRTG TGRAPVTPWGQLTKGYRTRNNKRTDNMIVSRRYRK >gi|301349841|gb|ADCQ01000009.1| GENE 8 4731 - 5015 419 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|187476543|ref|YP_784567.1| 30S ribosomal protein S19 [Bordetella avium 197N] # 1 89 1 89 91 166 89 2e-40 MSRSLKKGPFVDGSLLKKVEAAQASRDKRPIKTWSRRSTILPEFIGLTIAVHNGRQHVPV FINENMVGHKLGEFALTRTFKGHAADKKAAPAKR >gi|301349841|gb|ADCQ01000009.1| GENE 9 5021 - 5365 430 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|171060664|ref|YP_001793013.1| ribosomal protein L22 [Leptothrix cholodnii SP-6] # 1 109 1 109 109 170 80 1e-41 METTAIVRGVRLSAQKGRLVADLVRGKPVDKALNILSFTQKKAAGIIRKALDSAIANAEH NNGADIDELRVTSIYVEKATTLRRFSARAKGRGARIGKQTCHIYVTVGDTPAKK >gi|301349841|gb|ADCQ01000009.1| GENE 10 5376 - 6170 982 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|113869425|ref|YP_727914.1| 30S ribosomal protein S3 [Ralstonia eutropha H16] # 1 264 1 265 265 382 73 1e-105 MGQKINPTGFRLPVTHDWTSRWYATGRDFARTLAEDLKVRDYLGKKLKNASVGRILIERP AKNARITIFSARPGVVIGKKGEDIEVLKAELQKLMGVPVHVNIEEIRRPDLDAQLIADSI TQQLEKRIMFRRAMKRAMQNAMRQGALGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA DIDYGFSEAQTTYGIIGVKVWVYKGDNTGKDVAAEAPAEREDRRNRRPGKPANRRPRKQA DGAEGKQARAPRKPAPAAAAKEGE >gi|301349841|gb|ADCQ01000009.1| GENE 11 6173 - 6589 606 138 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119899699|ref|YP_934912.1| 50S ribosomal protein L16 [Azoarcus sp. BH72] # 1 137 1 137 137 238 81 5e-62 MLQPNRTKYRKDQKGRNYGLAQRGAKVSFGQFGLKVTERGRLTARQIEAARRAITRHIKR GGRVWIRVFPDKPISSKPAEVRMGNGKGNPEFWVALVQPGRVIYELDGVDEALAREAFRL AAAKLPLKSMFVTRQIGQ >gi|301349841|gb|ADCQ01000009.1| GENE 12 6602 - 6796 203 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|53720813|ref|YP_109799.1| 50S ribosomal protein L29 [Burkholderia pseudomallei K96243] # 1 64 1 64 64 82 67 3e-15 MKAKDLRAMDEAALNKELQDLLKAQFNLRMQKSHQQLENTSLIRQTRRDIARVRTILAQK AATK >gi|301349841|gb|ADCQ01000009.1| GENE 13 6793 - 7050 298 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|91774644|ref|YP_544400.1| SSU ribosomal protein S17P [Methylobacillus flagellatus KT] # 1 85 1 89 90 119 67 3e-26 MSENKLTRTLIGKAISTKMDKTVTVLVERKVKHPIGKIVVKSKKYHVHDENNDVREGDIV EISETRPISRTKSWTVSKIVERAEI >gi|301349841|gb|ADCQ01000009.1| GENE 14 7324 - 7692 569 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|56477604|ref|YP_159193.1| 50S ribosomal protein L14 [Aromatoleum aromaticum EbN1] # 1 122 1 122 122 223 93 1e-57 MIQMQSNLDVADNTGARSVQCIKVLGGSKRRYANIGDIIKVTVKDAAPRGRVKKGEVYSA VVVRTAKGVRRPDGSSICFDGNAAVLLNNKLEPIGTRIFGPVTRELRTERFMKIVSLAPE VL >gi|301349841|gb|ADCQ01000009.1| GENE 15 7706 - 8026 370 106 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163859260|ref|YP_001633558.1| 50S ribosomal protein L24 [Bordetella petrii DSM 12804] # 1 106 1 106 106 147 69 1e-34 MQRIRKGDEVIVITGRDKGKKGTVTAVHDDGKVVVEGINIVKKHVKPNPMLGQAGGIMDK TLPIEGSNVMLVNPKTGKGDRVGYKVVDGKKVRVFKSDGAVVGAKA >gi|301349841|gb|ADCQ01000009.1| GENE 16 8041 - 8580 768 179 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149928562|ref|ZP_01916788.1| 50S ribosomal protein L5 [Limnobacter sp. MED105] # 1 179 1 179 179 300 81 8e-81 MSRFLNKYRDEVIPALTKQFGYKTEMQVPRITKITLNMGVGDAVNDKKLVDHAVEDLTKI SGQKPIVTKTRKAIANFKIRENMPIGCMVTLRGERMYEFLDRLVTIAFPRVRDFRGVSAR SFDGRGNYNIGLKEQIIFPEIEYDKIDKLRGMNISITTTAKTDEEAKALLSAFHFPFRN >gi|301349841|gb|ADCQ01000009.1| GENE 17 8595 - 8900 362 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15676082|ref|NP_273213.1| 30S ribosomal protein S14 [Neisseria meningitidis MC58] # 1 101 1 101 101 144 70 1e-33 MAKLALINRELKRKACAQKFAAKRAALKAVINDATRSMEERMEARNALQSLPRDASPCRQ RNRCELTGRPRGTFRKFGLARGKIREAAMHGDIPGLTKASW >gi|301349841|gb|ADCQ01000009.1| GENE 18 8917 - 9312 535 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|121603249|ref|YP_980578.1| ribosomal protein S8 [Polaromonas naphthalenivorans CJ2] # 1 131 1 131 131 210 79 8e-54 MSISDPIADMLTRIRNGQMVDKTEVTMPSSKLKVAIAKVLEDEGYIDGYTVDANDGKPVL RIGLKYYAGRPVIEMIERVSRPGLRVYKNHETIPQVMNGLGIAIISTPKGVMTDRKARAA GIGGEVLCVVA >gi|301349841|gb|ADCQ01000009.1| GENE 19 9329 - 9862 609 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|152980508|ref|YP_001355086.1| large subunit ribosomal protein L6 [Janthinobacterium sp. Marseille] # 1 177 1 177 177 239 67 2e-62 MSRVAKIPVVLGKGVEAKIENGFITVKGPKGTLSQKLNPVVEVTIDNGEVHFKAIEPTKF SNAMSGTLRALVNSMNIGVTEGFTKKLNLVGVGYKAQAQGNVLNLSLGFSHPVAYKMPEG IEVKTPTPTEIVIHGADKQKVGQVAAEVRSYREPEPYKGKGVRYADEVVIIKETKKK >gi|301349841|gb|ADCQ01000009.1| GENE 20 9880 - 10248 392 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|221064820|ref|ZP_03540925.1| ribosomal protein L18 [Comamonas testosteroni KF-1] # 1 122 1 121 121 155 66 3e-37 MIDKKQNRLRRARATRARIKDMKVNRLTVHRTNLHIYAQIISADGKNVLCAASTLEPEVR AQLAGVTGKGGNVNAAKLIGTRIAEKAKAAGIESCAFDRAGYRFHGRIAALANAAREAGL KF >gi|301349841|gb|ADCQ01000009.1| GENE 21 10260 - 10778 686 172 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|83748166|ref|ZP_00945193.1| SSU ribosomal protein S5P [Ralstonia solanacearum UW551] # 1 172 1 172 172 268 76 3e-71 MAKNPKNAVAEEQDDGIREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKSR EVPVSVQKAMDQARRAMEKVPLRNGTIFHAVEGHHGASRVMLHPAPEGTGVIAGGPMRAI FDVMGIRNIVAKSHGSSNPYNMVRATLDALSKLRSPSEIAAKRGKTVEELIG >gi|301349841|gb|ADCQ01000009.1| GENE 22 10796 - 10975 191 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119478113|ref|ZP_01618192.1| ribosomal protein L30 [marine gamma proteobacterium HTCC2143] # 1 59 1 59 60 78 66 6e-14 MEKKTVKVTLVKSPIGCKKAHRQTVLGLGLKKIRQTRELEDTPAVRGMINTVSYLVRAE >gi|301349841|gb|ADCQ01000009.1| GENE 23 10990 - 11436 514 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|241664513|ref|YP_002982873.1| ribosomal protein L15 [Ralstonia pickettii 12D] # 1 142 1 142 143 202 70 2e-51 MKLNTIQPAAGSKSASHRVGRGVGSGWGKTAGRGHKGQKSRAGGFHKVGFEGGQMPLHRR LPKRGFTSWTHEFVAEVRLSDLEKLGLDEVNLADLINANVIKSNMKDARVILSGEITRKV TVRGMSVTKGAKAAIEAAGGSVVVDADK >gi|301349841|gb|ADCQ01000009.1| GENE 24 11457 - 12785 1325 442 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 9 434 16 444 447 514 59 1e-145 MAKNIPAKAGSKYGDLYRRLIFLVLALVVYRIGTHIPVPGIDPDTLKELFNQQQGGILGL FNMFSGGALSRFSVFALGIMPYISASIIMQMLSYVLPSLESLRKEGESGRRKITQYTRYG TLLLGLFQALGIAVALETQPGLVIDPGFFFRSVCVISLVTGTMFLMWLGEQITERGIGNG ISIIIFAGIVAGLPAAVSGLFQLVSTGAIGPLSAIFIIAIVMLVTAFVVFIERGQRRITV NYAKRQVGNRIYGGQSSYLPLKINMANVIPPIFASSLILFPATLASWFTSGDSTRWIRDL AASLSPGQPLYTLLYAALIVFFAYFYTALVFNPKETAENLKKSGAFVPGIRPGEQTSRYI DKVLLRLTLAGSIYLVFVCLVPEFLNLRFNVPFYFGGTSLLIVVVVTMDFMSQVQAYLMS HQYESLLKKTNFRGFGPGSLPR >gi|301349841|gb|ADCQ01000009.1| GENE 25 12938 - 13051 180 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149926588|ref|ZP_01914848.1| 30S ribosomal protein S13 [Limnobacter sp. MED105] # 1 37 1 37 37 73 89 1e-12 MKVNASVKKMCRKCKIIKRKGVVRVICSDPRHKQRQG >gi|301349841|gb|ADCQ01000009.1| GENE 26 13065 - 13430 508 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|187476571|ref|YP_784595.1| 30S ribosomal protein S13 [Bordetella avium 197N] # 1 121 1 121 121 200 81 1e-50 MARIAGINIPPNQHAEIGLTAIYGIGRPRAREILEAVGVEKTKKVKDLTDAELERIRDAI SKLTVEGDLRREIQLSIKRLIDLGTYRGMRHRRGLPVRGQRTRTNARTRKGPKKAGVALK K >gi|301349841|gb|ADCQ01000009.1| GENE 27 13445 - 13858 409 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239623373|ref|ZP_04666404.1| ribosomal protein S11 [Clostridiales bacterium 1_7_47_FAA] # 1 137 1 133 133 162 57 3e-39 MAGKIPNAQQIAAQRARRKVKKVVTEGIAHVHASFNNTIITITDRQGNAIAASSSGAQGF KGSRKSTPFAAQVAAEQAGRHALEYGLKNVEVRITGPGPGRESSVRALNALGIRVTSIQD VTPVPHNGVRPSKRRRV >gi|301349841|gb|ADCQ01000009.1| GENE 28 13926 - 14549 793 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149926591|ref|ZP_01914851.1| 30S ribosomal protein S4 [Limnobacter sp. MED105] # 1 207 1 207 207 310 75 1e-83 MARYTGPKEKLARREGCDLNLKSAVRSFDSKCKSESAPGQHGRTSGARLSDYGAQLREKQ KVKRMYGVLERQFRLYFAKAARKRGNTGEQLLSLLESRLDNVVYRMGFGCTRAEARQLVS HCAISVNGNKVNIPSYSVKAGDVIAVREKAKNQVRIAESLKLAESNGLPDWVSVDTKKLE GTFKNVPARDEICPDVNESLIVELYSR >gi|301349841|gb|ADCQ01000009.1| GENE 29 14703 - 15743 1325 346 aa, chain + ## HITS:1 COG:RSc2993 KEGG:ns NR:ns ## COG: RSc2993 COG0202 # Protein_GI_number: 17547712 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Ralstonia solanacearum # 5 345 4 325 326 449 70.0 1e-126 MSVNALLKPRSIEVETAEGNPYSATVTMEPFETGYAHTLGNALRRVLLSSMVGFAPTEAQ IAGVVHEYSQIDGVKEDVVDILLNVKGIIFKLENRDEVTITLRKEGEGVVTAADFDLPHD VQILNPEHVIANLSGGKLDMQLKIEKGRGYQPGDMRALKDDYSKGTIGRIIMDASFSPIL RVAYRVENARVEQRTDLDKLVMNIETNGAILPEEALRQAAHILQDQLSVFGGLPTIGLEP VAPQPAFGAMQPQAPVEAPMAKPQPPVDPILRRPVDDLELTVRSANCLKAENIYYIGDLI QRTENELLKTPNLGRKSLNEIKEVLAAHGLTLGMKLENWPPVGFDH >gi|301349841|gb|ADCQ01000009.1| GENE 30 15906 - 16307 507 133 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|91786412|ref|YP_547364.1| 50S ribosomal protein L17P [Polaromonas sp. JS666] # 1 126 1 132 132 199 78 1e-50 MRHKLGLRKLNRTSAHRLAMLRNMMNSLLRHEAIKTTLPKAKELRRVVEPMITLAKEPTV ANKRLAFNRLRDREIVVKLFNEIGPMFKDRKGGYTRILKMGYRVGDNAPLAYVELVQKTT DAAPAKEEAQKAE >gi|301349841|gb|ADCQ01000009.1| GENE 31 16381 - 16815 246 144 aa, chain + ## HITS:1 COG:RSc2642 KEGG:ns NR:ns ## COG: RSc2642 COG1188 # Protein_GI_number: 17547361 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Ralstonia solanacearum # 6 134 1 129 131 94 41.0 6e-20 MKNTQIKPAAEESTSVRLDRWLWAARFFKTRTLSQDNIELGRVRMNGVRLKASKDIRVGD QLEIIRGEERFVVVVKALSSKRGSATVAQTLYEETPESLEARTRIKENSRFMPMPGSDYH GRPTKRDGRKIRQFMAEFDPSKDF >gi|301349841|gb|ADCQ01000009.1| GENE 32 16952 - 17965 1163 337 aa, chain - ## HITS:1 COG:RSc2989 KEGG:ns NR:ns ## COG: RSc2989 COG0113 # Protein_GI_number: 17547708 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Ralstonia solanacearum # 4 331 2 329 331 475 69.0 1e-134 MQTLGKFPSVRMRRMRHDDFSRRLMRESRVSVDDLIYPVFVIEGNNKRVQVPSMPGVERL SLDLLLKQAEECVKLGIPVMALFPSIDASLKTPDGREAANPDGLIPRVVRSLKEHFPELG VMCDVALDPYTTHGQDGLIDETGFILNDETIEMLVKQMLAQAQAGADIVAPSDMMDGRIG IIRDALEAHGLIYTKIMAYSAKYASCYYGPFRDAVGSASNLGKSNKAVYQQDPGNTNEAL WEVGLDLAEGADMVMVKPGMPYLDVLWRVKQEFQAPTFAYQVSGEYSMLMAAFQNGWLDE KKTIMETMLCFKRAGADGVLTYFAPQVARWLNEEGRK >gi|301349841|gb|ADCQ01000009.1| GENE 33 18043 - 18684 364 213 aa, chain - ## HITS:1 COG:RSc2988 KEGG:ns NR:ns ## COG: RSc2988 COG0218 # Protein_GI_number: 17547707 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Ralstonia solanacearum # 3 210 2 210 234 182 47.0 4e-46 MSALFDSARFVMSVSELMGLPETELPEIAFAGRSNAGKSTTINVLCRQSRLAFSSKTPGR TQLLNFFELSLKGEIPRQRIPECFLVDLPGYGYAKAAPETRRNWEGLVGGYVQQRPQLMG MVLVMDARRPFMPADEFLLDFLSVRPDLKLHLLLNKADQLKTMEKRQVLNTVKDRALAMG NHVSVQLFSGLKKEGVEQLQNVLCTWLNLPLGS >gi|301349841|gb|ADCQ01000009.1| GENE 34 18757 - 19884 1054 375 aa, chain - ## HITS:1 COG:PA0141 KEGG:ns NR:ns ## COG: PA0141 COG2326 # Protein_GI_number: 15595339 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 110 362 22 274 298 326 61.0 4e-89 MNHSVTHKDAAEPQKIDGQNAVIVEKKSEELEDSKFDLGGYENPYQYLKQFLRTTDETAA DKVADAVMRNLTGQGQEKLLKSLIEHACCSFDKKISATADMNALRKDLKPGEYPYVNGYN RDLYNKQLRSLQIELLKLQSWIQKKGKKLVIIFEGRDAAGKGGTIQRFTEHLNPRGARIA ALPKPTATEERQWYFQRYVAHLPSAGEMVFFDRSWYNRAVVEPVMGFCTKEQYETFMKEV PSFERNLLSEDIILFKFWLNVTRGEQKRRFRQRRKDPLKQWKLSPVDLASLNKWDDYTKH INQMFFATDTVDAPWIVVESDDKMRARLNAIRFVLSSLPYTDKNEKKIGEVDPRIVFRAA AVTGTLTKKDKDGKK >gi|301349841|gb|ADCQ01000009.1| GENE 35 20014 - 21120 1073 368 aa, chain - ## HITS:1 COG:STM0141 KEGG:ns NR:ns ## COG: STM0141 COG0516 # Protein_GI_number: 16763531 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Salmonella typhimurium LT2 # 23 365 1 344 347 455 66.0 1e-128 MPLFLLFVGECVVKNCLTETFPMHIENEVKLDFKDVLIRPKRSTLSSRSNVDLIRPFTLR NSRVEYSGVPIIAANMDTTGTFEMAEALGKYDLSVVLHKHYSEDEYVAYFNGLKRKSTAF YSMGITDNDLKKFKAVMERAPGAIEYLCIDVANGYTEIFVDFVSKIREEFPHLAIMAGNV VTGDMTEELILAGADIVKVGIGPGSVCTTRKMTGVGYPQLSAIIECADAAHGLGGLICSD GGCTRPGDIAKAFGGGADFVMLGGMLAGHNESGGEVIEKDGKVYRSFYGMSSKSAMNKYS GGVAKYRAAEGKTVYLEDRGPVADTVQEILGGVRSACTYVGARRLKELTKRTTFVRVTQQ LNEVFGKS >gi|301349841|gb|ADCQ01000009.1| GENE 36 21322 - 24444 1608 1040 aa, chain - ## HITS:1 COG:ECs0362_2 KEGG:ns NR:ns ## COG: ECs0362_2 COG3468 # Protein_GI_number: 15829616 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 517 1040 1 537 537 385 42.0 1e-106 MNFNILAQNKQIGREKLARHLPSLKYLTIVVATCFFGSPLSASAQTTSAVPSNETISSLI KVDPGQNVTVSTGSPGFYSSKSGETVGVWVNGGNFTDNATSVPIESPTLFQVGGSSRYQS GNADSSAQDSLGGTIRVKQLHTNGGGLTPNLTVALFGSSTADSVFSSDSFYAVTGAAKSV DIMIDGANSTHETALKVGGGVSIQRSPSFSGGTLSFVLQNSGSFSSDGDSYFIFDDPKDR FVLQNNQSSAGIRVNKDLYLYNSASPLPDLSNESKNALIKNTNVTVGGTFAVLGGDDWLP GIKTTFLQVVNDPGVDSKITAQTVELYSLTSDNSTTLLLGHGAKLNAPEIYIHAHTPSST ATLMLGDATSKDDNYGITTKFVLMDGEGSDKILFNNAHSDNSAEEASFPIYGVGTVEIQS GRTVFTKNSGYKGQTLINNRSTLILKSVNAVGSSSVTNRGELVYSGAQGEIPNDITGAGS VVFTDAARISMTKDAAWTGPTTVGNAIVSMGSIDKPVHISSSSVTLSPQAVLYGFGTVGG SLNNAGTFIVGDKDHTSQTHFEVLGNVTNSGEIDLGNGKSAGNQLTVNGNYTGSDGLLVF NTELNGDDSPTDILVVKGNTEGSTRVRVNNVGGVGKQTLNGIELINVSGDSNGTFKQEGR IVAGAYDYRLKRGAGANANNWYLTSRLSQSKDDGGRGETDNSGVIDDHPENPSIDNLLVR PEVGAYVGNNAAVRTLFSDRLYDRVGDLWHTEKTRGASVWIRQRGDYSSWRESTGQSKNR TQMYSTQLGADVHSWTSNGADRYLIGWLMGYGHANTKSHSVNSRYHATGLVDGINVGLTG TWFQDRLNHEGIYVDSWLTYSWFDNKVKGETLRTEKYHSKGLSASVETGYTAKLSDFKTV AGTDVSWYLQPQAQVIWSGVKTDTFHEANGTEVKSKGRNNIQTRLGARTFVNISSQAYFN GTAGTQLFLEGNWIHNTKSPGVEMNGTALEQKGVRNIGEVKLGLNGKLNKNLQLWTNATA QAGSNHYRDLTGMIGLKYSF >gi|301349841|gb|ADCQ01000009.1| GENE 37 25200 - 26513 1006 437 aa, chain - ## HITS:1 COG:VC0125 KEGG:ns NR:ns ## COG: VC0125 COG0019 # Protein_GI_number: 15640156 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Vibrio cholerae # 14 421 8 412 417 459 53.0 1e-129 MNLSLPNDREFAWKDGTLWCENVPLKDLAARFGTPLYVYSKQAIVNAFQSYQKPLEPYKH LMCFAVKANSNLSIIRLLGKLGAGFDIVSEGELRRIQAAGCDTSKVIFSGVAKTYHEIEA ALDADIKCFNIESPAELDRVIAVAQKKGKKARVSFRVNPDVDAKTHPYISTGLKKNKFGI AYDQAVELYLKASRSPELEVVGIDCHIGSQITDTAPFVDACEKLCTLLDKLRLNGIDLQH IDFGGGLGIQYSNEAVPSPTVLVAALRRALVKRGYGDKEMIFEAGRSLVGNSGALLMTVQ YMKQGELKNFCIVDCGMNDMIRPTLYQAWMQIVPVTPKKEGKETYCYVVGPVCETGDWLG KDRLLNVQEGDLMALLSAGAYGMSMASNYNSRCLPAEVLVDGNKAVLIRKRQRAEELFSD EILVTDTQLGSDGLTDQ >gi|301349841|gb|ADCQ01000009.1| GENE 38 26540 - 26869 298 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859976|gb|EFL83053.1| ## NR: gi|302859976|gb|EFL83053.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 109 1 109 109 176 100.0 4e-43 MVDLSIMLKRSLILFFPCLLLTGCGIKGPLYLPPNPNDSYLSRIGQQINEMTGEDTVGAA PADAAQKAQDEALPAEGTDKNPGDATEQLPDSVTSPLRSAPNNPMSTAY >gi|301349841|gb|ADCQ01000009.1| GENE 39 26832 - 27161 359 109 aa, chain + ## HITS:1 COG:VC0123 KEGG:ns NR:ns ## COG: VC0123 COG1965 # Protein_GI_number: 15640155 # Func_class: P Inorganic ion transport and metabolism # Function: Protein implicated in iron transport, frataxin homolog # Organism: Vibrio cholerae # 13 81 1 69 104 66 43.0 1e-11 MRERFSIIDKSTMTKRDFIELSEKTFNDIEQLVDDQYPDVDFDREGNVLTLTLEDGKVVV INRQEAMEEMWLASPLGGMHFYYDAAGVLVNYRKGEKPFAECLKEALES >gi|301349841|gb|ADCQ01000009.1| GENE 40 27163 - 28011 525 282 aa, chain + ## HITS:1 COG:RSc1527 KEGG:ns NR:ns ## COG: RSc1527 COG0294 # Protein_GI_number: 17546246 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Ralstonia solanacearum # 4 279 15 285 291 275 51.0 6e-74 MVQKFWQCRDRSIDLSSPKIMGIVNVTPDSFSDGGKYYSSAQAIEHGLQLAEEGADILDI GGESTRPGAEEVSVHSELERVIPVIEALSARGLVVSVDTSKPEVMTAAAQVGAQIINDVY ALRRDGALEAAEKSGCGVCLMHMQGEPRTMQKNPVYTDLLSEVKSFLAERARALTDLGVS AEKIVLDPGFGFGKTVSQNFELLAKTEDFLSLGYPLLYGMSRKSSLGAVTGITKAEERLI SSVTAHLLAVERGASIVRVHDVKQMKEALTIYKAMVHYKDLK >gi|301349841|gb|ADCQ01000009.1| GENE 41 28008 - 29345 1513 445 aa, chain + ## HITS:1 COG:RSc1528 KEGG:ns NR:ns ## COG: RSc1528 COG1109 # Protein_GI_number: 17546247 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Ralstonia solanacearum # 1 438 1 443 447 516 61.0 1e-146 MSRKYFGTDGVRGRVGQTPITPEFAMLLAQAAGRILKQQTTDGEVGVFIGKDTRVSGYML EAALQAGFLSAGVDVMLGGPLPTPAVAYLTRAQRLSAGVVISASHNPFYDNGIKFFSDKG TKLPDEMELQIEKEMDRGFSCVDSARLGKARRLDDAAGRYVEFCKSTFPSDLDLKGFKIY VDCANGAAYHIAPDVYHELGATVVCGGNTPDGFNINEGVGATHTETLPDRVQKAGCDIGI ALDGDADRLIMADRHQVYNGDQLLYLIAKDRLNRGELKGVVGTLMTNFAIEKQFKTLGVP FHRAKVGDRYVLEIMLKEGIDLGGEGSGHLIILDKQTTGDGIVSSLQVLSVLARNRSTLE SVLSEVALTPQVLINRRYKAGYVWNEDQALLDAIKAVSKELEGKGRVLVRASGTEPLVRV MVECEDIGEAKKHAQALAELIPLEA >gi|301349841|gb|ADCQ01000009.1| GENE 42 29355 - 30047 473 230 aa, chain + ## HITS:1 COG:VC0719 KEGG:ns NR:ns ## COG: VC0719 COG0745 # Protein_GI_number: 15640738 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Vibrio cholerae # 1 226 1 226 229 207 45.0 1e-53 MTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCA GLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVI RRKGGDALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLI DKVWGVGADIDERTVDVHMLRLRKQLAGTAAADFIETVRGVGYRASNLKA >gi|301349841|gb|ADCQ01000009.1| GENE 43 30396 - 30848 226 150 aa, chain + ## HITS:1 COG:mlr5983 KEGG:ns NR:ns ## COG: mlr5983 COG3547 # Protein_GI_number: 13474998 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mesorhizobium loti # 9 137 4 134 342 107 48.0 8e-24 MTNNIQFSSVCGIDIAKSVMQVYRVTSDGVVSNKAVKRADFLNEFRNTPPALIGMEACGG SQHWARELQSLGHTVRLMPPKLVKPYVTGLKNDKNDARGIYTALEMGVREVPVKSAAIRD LALLQTMRTKRQREKVEKLTTSEASCLGTG >gi|301349841|gb|ADCQ01000009.1| GENE 44 30980 - 31435 196 151 aa, chain + ## HITS:1 COG:CC2740 KEGG:ns NR:ns ## COG: CC2740 COG3547 # Protein_GI_number: 16126973 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Caulobacter vibrioides # 29 141 233 348 354 78 37.0 4e-15 MAKIKELETNIESIAKTLKHYDLFQSALGVGPITAATMLVLLCNPEVFKNGREFAAYIGL APKSSGSDGKNFVTHIPKKYECNNEVRTLLVQCAHAICRSKHKSDRVSSILARKPKKVVI IAVANKLARQLWIMAKKGEKFERRFILAAAQ >gi|301349841|gb|ADCQ01000009.1| GENE 45 31828 - 32925 816 365 aa, chain + ## HITS:1 COG:RSc1535 KEGG:ns NR:ns ## COG: RSc1535 COG0642 # Protein_GI_number: 17546254 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 8 334 92 421 443 279 43.0 7e-75 MTDKNHTKFEEKELRFRQTLSALPDGVVLLRKDLVIQWMNRIAERDLSLDPEKDVGKKLT DVFTNPEFIQHIQSERWKARQLIDLPDGRVLEVRVISAGKKYTVVVTRDITESKRIDDFR RDFVGNVSHELRTPLTVIQGFLELATENPNLNEEDRLHWEMMLEQAERMRALVDDLLALS RLEQDAAPASRELIDVDEILEEAAAEGRMISGGAHEIKIAKVASEGILGDFKDMRSAVTN LVTNAVRYTPKDGKIELSWEVKDDHGILSVKDNGIGIAPEHIPRVTERFYRVDKSRSRET GGTGLGLAIVKHVLFRHQAQLQIESELGKGSTFKIIISKARLAPPINSKDLLSGTVPESS PVIGV >gi|301349841|gb|ADCQ01000009.1| GENE 46 33551 - 33793 245 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 80 516 595 595 155 96.0 5e-37 DKTARKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPET PEDVQEEPEAETLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 05:31:36 2011 Seq name: gi|301349840|gb|ADCQ01000010.1| Burkholderiales bacterium 1_1_47 cont1.10, whole genome shotgun sequence Length of sequence - 6757 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 183 204 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein - Prom 203 - 262 5.2 2 2 Op 1 . + CDS 608 - 1300 288 ## gi|302859984|gb|EFL83061.1| hypothetical protein HMPREF0189_00138 + Prom 1302 - 1361 1.8 3 2 Op 2 . + CDS 1388 - 2191 513 ## COG0588 Phosphoglycerate mutase 1 - Term 2233 - 2266 6.1 4 3 Tu 1 . - CDS 2292 - 3752 2075 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 3789 - 3848 4.7 5 4 Tu 1 . - CDS 3966 - 4586 468 ## Rfer_3811 hypothetical protein - Prom 4613 - 4672 4.4 6 5 Tu 1 . + CDS 4510 - 4725 62 ## + Term 4941 - 4976 2.6 + Prom 4919 - 4978 13.8 7 6 Op 1 . + CDS 5085 - 5552 408 ## COG0789 Predicted transcriptional regulators 8 6 Op 2 . + CDS 5572 - 6414 726 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 6438 - 6493 11.1 Predicted protein(s) >gi|301349840|gb|ADCQ01000010.1| GENE 1 3 - 183 204 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 60 1 60 595 124 100.0 2e-27 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKIGTILGGQKDGKIRFDEAF >gi|301349840|gb|ADCQ01000010.1| GENE 2 608 - 1300 288 230 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859984|gb|EFL83061.1| ## NR: gi|302859984|gb|EFL83061.1| hypothetical protein HMPREF0189_00138 [Burkholderiales bacterium 1_1_47] # 1 230 1 230 230 471 100.0 1e-131 MAVRYVVEDSSWRGEVNVPRKEFGFNRLRYLWEHCPTVLLYFPNASQDDVNHDLARDIRL KVNALRFGYISIDLKDGGKALFVFDRRIRRQDNIRLKDWLVALGAIADLPYIVYAPAGRD YHRINSWFSFPTMRGAMGRKVMDSEILANTPIRENVMADTLIGKPGITAELSEAIINMAP GFVEHPFFAIPWRLDKAIHAPIELPSGEKRTVDQVIKPYTEPVQVKIRWE >gi|301349840|gb|ADCQ01000010.1| GENE 3 1388 - 2191 513 267 aa, chain + ## HITS:1 COG:XF1893 KEGG:ns NR:ns ## COG: XF1893 COG0588 # Protein_GI_number: 15838491 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Xylella fastidiosa 9a5c # 33 266 4 237 249 212 45.0 7e-55 MKRLFLTAVTASVLSSAFLISVPAAQAEEAAYKLVLLRHGESQWNLEKRFTGWSDIDLTD KGRAGAVKAGEIMKGAGVNFDEVHTSKLNRAIETAQLAQKGMSAQWVPLQKFWRLNERCY GDLEGKKREDVAKEVDDDQVKIWRRSFDVPPPSLAVTDARSPVKDPRYADLDPRVIPASE SLKDVIARVGPYWTDQLRPAIKSGKTVLVVGHSTNLRALSAWIEPNLDEKALQKLEIKNT KPILYEFDKNMNVICRKVLEPSTVKKE >gi|301349840|gb|ADCQ01000010.1| GENE 4 2292 - 3752 2075 486 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 22 461 39 477 484 412 53.0 1e-114 MQKILLASLVSAAFAMPAVAAEQADVVIIGSGGAGLSAAVTAHDLGKKVIVLEKMAMVGG NTNRAAGGLNAAETKPQAKLGIKDSIESHFNDTIKGGHYLNNPDLDHKLTDNAKYSVDFI NDLGGDLNDVGMMAGASQKRAHRPTGGGFVGAEVVRTLYKASKDRNIDIRTMADAQKLIV KDGKVVGVQFKQGKKPAQIVHAKAVVIASGGFSANQAMVAKIDPKLKGFATTNQPGATGD GIIMGEKVGAATVDMKQIQTHPTVVPGNGEMITEAVRGNGAILVNKEGKRFINELQTRDV VSAAELKQTDKVGYLFFDNSVRKSLKAIETYIKKGLVTEGKTPEELAQKLGINADNLKTT LAEYAKFQADKKDAQFGRADMPRPLTEAPYYAVMVTPAVHHTMGGLRINTEAQVLNHKGN VIPGLFAAGEVTGGVHGGNRLGGNAMADIVTFGRIAGRNAAENPTGVIIPRATPPQTAEK LAHEAK >gi|301349840|gb|ADCQ01000010.1| GENE 5 3966 - 4586 468 206 aa, chain - ## HITS:1 COG:no KEGG:Rfer_3811 NR:ns ## KEGG: Rfer_3811 # Name: not_defined # Def: hypothetical protein # Organism: R.ferrireducens # Pathway: not_defined # 55 199 46 186 193 64 31.0 3e-09 MLRRTLLAVSAAFSAGAAFAADKVGIRPETVPSSAEYPRLRAGTQLDHLYESMLANGFGI KNPKASSDLPTVVIVSDTQCPWCSRLWNATMPLTDKVNFVWYLVPVLRDLSISQAAMILS SSNPWEKYGEHELHFKDAGFRGLNPEGIPVDQKYRDEVWTNAKIARWSGVTSVPLGVSKN KAGKYIPIFSGSSTEQIEEVVFGKPK >gi|301349840|gb|ADCQ01000010.1| GENE 6 4510 - 4725 62 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPTLSAAKAAPAENAADTANNVLLNIFLSGCFVDVFLVYRLEAPDRLINSKKKQDAQTKT PARTQAGVLMH >gi|301349840|gb|ADCQ01000010.1| GENE 7 5085 - 5552 408 155 aa, chain + ## HITS:1 COG:CAP0107 KEGG:ns NR:ns ## COG: CAP0107 COG0789 # Protein_GI_number: 15004810 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 1 148 1 148 152 104 35.0 5e-23 MSYTIGELAKKFNIAPSALRYYEKEGLIPGVKRKASGAREFEAKDCEVLLLIDCLKQSGM SIKEISHFIELLHAGERTLEDRADILSDLEVKFKEELKRQKQTLKRLQYENWVYRQAVRL GSIEAVEELPSASMPKKLRKIKKKIDRICRPEETF >gi|301349840|gb|ADCQ01000010.1| GENE 8 5572 - 6414 726 280 aa, chain + ## HITS:1 COG:TM1401 KEGG:ns NR:ns ## COG: TM1401 COG0111 # Protein_GI_number: 15644153 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Thermotoga maritima # 40 229 36 225 306 117 35.0 2e-26 MEVVVTTKDFCEEAKHYLESEGFEVVLRNRLGIGAGAPDDVLYPVVEDANAIIAGTETYR PELLTRLSNLKLISRNGIGYDAINLDALRKEGIGLTRTKGFVEGAVAEQVMAYILYFARR VDLQSADMHDHSWNSRLMPGAKNRTLGLVGFGGIGTEVAKRAVPFGMKVIYFCRHPNPAD DAAYGVQSVSMEELLKESDYVVAAVPLTDQTFHLFNEECIAQMKAGSVLTRYSNALLTPH SATSTAENSKATNFAAANNLVNYLKKDIDAKYVVVQGTRY Prediction of potential genes in microbial genomes Time: Fri May 13 05:32:47 2011 Seq name: gi|301349839|gb|ADCQ01000011.1| Burkholderiales bacterium 1_1_47 cont1.11, whole genome shotgun sequence Length of sequence - 69973 bp Number of predicted genes - 69, with homology - 69 Number of transcription units - 25, operones - 15 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 8 - 274 153 ## gi|302858750|gb|EFL81841.1| putative ISCpe5, transposase - Term 164 - 202 0.3 2 2 Tu 1 . - CDS 342 - 1049 984 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis - Prom 1129 - 1188 3.9 3 3 Op 1 24/0.000 + CDS 1366 - 1704 358 ## COG0347 Nitrogen regulatory protein PII 4 3 Op 2 . + CDS 1701 - 2963 1623 ## COG0004 Ammonia permease + Term 2989 - 3023 6.1 - Term 3017 - 3058 -0.4 5 4 Tu 1 . - CDS 3079 - 5490 2596 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein - Prom 5519 - 5578 5.2 6 5 Op 1 . - CDS 5624 - 5953 412 ## Rfer_2863 branched-chain amino acid transport 7 5 Op 2 . - CDS 5946 - 6662 699 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 6844 - 6903 3.6 + Prom 6625 - 6684 3.5 8 6 Op 1 . + CDS 6837 - 7265 349 ## mru_1724 hypothetical protein 9 6 Op 2 20/0.000 + CDS 7344 - 7892 261 ## COG0703 Shikimate kinase 10 6 Op 3 1/0.000 + CDS 7889 - 8971 1119 ## COG0337 3-dehydroquinate synthetase 11 6 Op 4 . + CDS 8968 - 10113 887 ## COG0232 dGTP triphosphohydrolase + Term 10132 - 10174 1.0 - Term 10118 - 10162 5.2 12 7 Op 1 8/0.000 - CDS 10184 - 11131 1201 ## COG3301 Formate-dependent nitrite reductase, membrane component 13 7 Op 2 . - CDS 11132 - 11872 774 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 14 7 Op 3 . - CDS 11950 - 12996 1330 ## Ssed_0493 cytochrome c, putative 15 7 Op 4 . - CDS 13054 - 13851 962 ## DMR_29720 hypothetical protein 16 7 Op 5 5/0.000 - CDS 13863 - 15983 2773 ## COG2414 Aldehyde:ferredoxin oxidoreductase 17 7 Op 6 . - CDS 16005 - 16709 896 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 - Term 16724 - 16750 0.3 18 8 Tu 1 . - CDS 16812 - 16961 190 ## gi|302860007|gb|EFL83084.1| hypothetical protein HMPREF0189_00161 - Prom 17035 - 17094 7.6 + Prom 17039 - 17098 11.7 19 9 Op 1 . + CDS 17164 - 18333 678 ## COG0303 Molybdopterin biosynthesis enzyme 20 9 Op 2 1/0.000 + CDS 18385 - 19116 236 ## COG1943 Transposase and inactivated derivatives + Prom 19135 - 19194 4.2 21 9 Op 3 21/0.000 + CDS 19227 - 23912 5171 ## COG0069 Glutamate synthase domain 2 22 9 Op 4 . + CDS 23921 - 25399 1152 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 23 9 Op 5 . + CDS 25421 - 25879 270 ## COG0824 Predicted thioesterase + Term 25893 - 25920 -0.1 + Prom 25965 - 26024 4.2 24 10 Op 1 23/0.000 + CDS 26072 - 26887 257 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 25 10 Op 2 16/0.000 + CDS 26887 - 27675 856 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 26 10 Op 3 1/0.000 + CDS 27691 - 28173 492 ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component 27 10 Op 4 5/0.000 + CDS 28178 - 28954 868 ## COG2853 Surface lipoprotein 28 10 Op 5 . + CDS 28951 - 29577 699 ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component 29 10 Op 6 . + CDS 29580 - 29834 298 ## gi|302860019|gb|EFL83096.1| STAS domain protein + Term 29855 - 29889 3.2 - Term 29842 - 29876 4.5 30 11 Op 1 . - CDS 29896 - 30411 807 ## gi|302860020|gb|EFL83097.1| hypothetical protein HMPREF0189_00174 31 11 Op 2 . - CDS 30447 - 30959 614 ## Tola_2807 17 kDa surface antigen - Prom 31074 - 31133 4.3 + Prom 31070 - 31129 4.6 32 12 Op 1 . + CDS 31233 - 33992 2409 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 33 12 Op 2 . + CDS 34021 - 36285 1947 ## LF82_0212 cyclic di-GMP-binding protein 34 12 Op 3 . + CDS 36304 - 37401 1475 ## COG3405 Endoglucanase Y 35 12 Op 4 . + CDS 37420 - 39072 1608 ## ETAE_3389 putative inner membrane protein possibly involved in cellulose synthesis + Term 39091 - 39130 5.1 + Prom 39075 - 39134 3.9 36 13 Op 1 1/0.000 + CDS 39201 - 40454 1373 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 37 13 Op 2 18/0.000 + CDS 40451 - 41092 792 ## COG0040 ATP phosphoribosyltransferase 38 13 Op 3 6/0.000 + CDS 41089 - 42399 1702 ## COG0141 Histidinol dehydrogenase 39 13 Op 4 18/0.000 + CDS 42410 - 43000 624 ## COG0131 Imidazoleglycerol-phosphate dehydratase 40 13 Op 5 25/0.000 + CDS 42997 - 43632 696 ## COG0118 Glutamine amidotransferase 41 13 Op 6 23/0.000 + CDS 43645 - 44418 1026 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 42 13 Op 7 24/0.000 + CDS 44423 - 45184 1037 ## COG0107 Imidazoleglycerol-phosphate synthase 43 13 Op 8 4/0.000 + CDS 45199 - 45585 354 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 44 13 Op 9 2/0.000 + CDS 45597 - 45923 407 ## COG0140 Phosphoribosyl-ATP pyrophosphohydrolase + Prom 45936 - 45995 1.5 45 13 Op 10 2/0.000 + CDS 46015 - 46359 332 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 46 13 Op 11 16/0.000 + CDS 46369 - 46608 187 ## PROTEIN SUPPORTED gi|90022866|ref|YP_528693.1| ribosomal protein L25 47 13 Op 12 28/0.000 + CDS 46630 - 47412 863 ## COG1826 Sec-independent protein secretion pathway components 48 13 Op 13 . + CDS 47416 - 48207 829 ## COG0805 Sec-independent protein secretion pathway component TatC + Term 48219 - 48275 11.5 - Term 48211 - 48256 12.4 49 14 Op 1 . - CDS 48283 - 49464 532 ## COG0477 Permeases of the major facilitator superfamily 50 14 Op 2 . - CDS 49467 - 50177 396 ## COG3382 Uncharacterized conserved protein 51 14 Op 3 . - CDS 50170 - 50817 284 ## COG4978 Transcriptional regulator, effector-binding domain/component - Prom 51058 - 51117 10.4 + Prom 51294 - 51353 6.8 52 15 Op 1 . + CDS 51418 - 52107 490 ## gi|302860042|gb|EFL83119.1| hypothetical protein HMPREF0189_00196 53 15 Op 2 . + CDS 52137 - 53798 1969 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 54 15 Op 3 . + CDS 53807 - 55657 927 ## COG4121 Uncharacterized conserved protein 55 15 Op 4 . + CDS 55728 - 56639 714 ## COG2962 Predicted permeases + Prom 56698 - 56757 4.6 56 16 Op 1 . + CDS 56786 - 57142 291 ## gi|302860046|gb|EFL83123.1| hypothetical protein HMPREF0189_00200 57 16 Op 2 . + CDS 57154 - 57981 919 ## COG1968 Uncharacterized bacitracin resistance protein + Term 58005 - 58042 9.4 - Term 57986 - 58032 6.9 58 17 Tu 1 . - CDS 58044 - 58766 931 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase - Prom 58850 - 58909 5.3 + Prom 58850 - 58909 4.8 59 18 Tu 1 . + CDS 58985 - 59704 450 ## COG4566 Response regulator + Term 59929 - 59961 -0.8 - Term 59644 - 59690 -0.1 60 19 Tu 1 . - CDS 59696 - 61399 942 ## COG0642 Signal transduction histidine kinase - Prom 61566 - 61625 3.8 + Prom 61594 - 61653 2.5 61 20 Op 1 . + CDS 61731 - 63194 1548 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 62 20 Op 2 . + CDS 63210 - 63536 192 ## Glov_0887 hypothetical protein + Term 63559 - 63592 2.8 - Term 63644 - 63678 -0.8 63 21 Tu 1 . - CDS 63714 - 64166 124 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 64353 - 64412 5.2 - TRNA 64259 - 64332 81.0 # Gly CCC 0 0 64 22 Tu 1 . + CDS 64471 - 65220 337 ## Desal_3183 4Fe-4S ferredoxin iron-sulfur binding domain protein + Term 65282 - 65329 11.4 - Term 65270 - 65315 11.0 65 23 Op 1 32/0.000 - CDS 65333 - 65986 951 ## COG2011 ABC-type metal ion transport system, permease component 66 23 Op 2 . - CDS 65976 - 67034 1397 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 67173 - 67232 6.1 - Term 67319 - 67357 -0.9 67 24 Tu 1 . - CDS 67444 - 68805 1237 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 68850 - 68909 3.0 + Prom 69242 - 69301 2.1 68 25 Op 1 . + CDS 69344 - 69745 248 ## gi|302860058|gb|EFL83135.1| putative transcriptional regulator LYSR-type + Prom 69766 - 69825 5.2 69 25 Op 2 . + CDS 69845 - 69971 134 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349839|gb|ADCQ01000011.1| GENE 1 8 - 274 153 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858750|gb|EFL81841.1| ## NR: gi|302858750|gb|EFL81841.1| putative ISCpe5, transposase [Burkholderiales bacterium 1_1_47] # 1 88 462 549 549 169 100.0 4e-41 MAYTRFRRRKLAKVRLEFALTCLGLNIRKFLKFKKSGKLPTYWKVPEGLEAETFKKPSAK RIANRLKKRKNLQPNEIAKRGYRRKGMR >gi|301349839|gb|ADCQ01000011.1| GENE 2 342 - 1049 984 235 aa, chain - ## HITS:1 COG:mlr2151 KEGG:ns NR:ns ## COG: mlr2151 COG1985 # Protein_GI_number: 13471997 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Mesorhizobium loti # 3 233 5 229 232 121 34.0 1e-27 MKITCHMIMSVDGRLISKYWSPLYNASSSVTEVYEAADAKLSADGWIVGRKTMAEYGADV VEEKEPMEGHKTMQTNTFIGKREGRPLAVVFDIQGRLHYKSPTLPSGEHIVAVLGSHVTR AYQKELEEIGVSYIMRTPGSKLEETQSALKHLEQDFNVKHMLLEGGAITCGNFLQMGLVD ELSMIVYPGLDGESGHPSVIECQGVVEPLKKNRLELIDCETVGSGYVWLRYNIHR >gi|301349839|gb|ADCQ01000011.1| GENE 3 1366 - 1704 358 112 aa, chain + ## HITS:1 COG:RSc0342 KEGG:ns NR:ns ## COG: RSc0342 COG0347 # Protein_GI_number: 17545061 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Ralstonia solanacearum # 1 112 1 112 112 153 71.0 6e-38 MKLIFAVFKPFKLDEVREALTEIGITGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVQ IMAACPDGLIDIATETIRNAANTGKIGDGKIFVMPLEEVVRIRTGETGEGAL >gi|301349839|gb|ADCQ01000011.1| GENE 4 1701 - 2963 1623 420 aa, chain + ## HITS:1 COG:mll4246 KEGG:ns NR:ns ## COG: mll4246 COG0004 # Protein_GI_number: 13473594 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Mesorhizobium loti # 23 419 51 450 451 371 57.0 1e-102 MRVTALLLALLSPAAWAAEESAMNAADVSWMMVATTLVLFMTIPGIALFYAGMVRKKNVL SVVMQSFAICCSITIVWYVCGYSLAFTEGNFFIGGFDKVFLHGIGINTMQGSIPEMLFMM FQMTFAILTPALMCGAFAERMKFSALFLFMVLWSLFCYVPICHWVWGPDGWLAAAGALDY AGGTVVHINAGVAGLVACLMLGKRIGYGKEAMAPHNLILAMVGACFLWIGWFGFNGGSGL AADGRAVMAIVVSQIAAAAAALIWMACEYVENKRFTVLGAISGAVAGLVAITPASGFVEP APALFIGLCGGFICYFGATRLKHWLGYDDSLDAFGVHGVGGIAGAILTGVFASEAITGSA MKPVLEQVWIQTESVIATLIYASIVTYVLLKLVDVMIGIRVSAEEERMGLDLSLHGERVE >gi|301349839|gb|ADCQ01000011.1| GENE 5 3079 - 5490 2596 803 aa, chain - ## HITS:1 COG:RSc2976 KEGG:ns NR:ns ## COG: RSc2976 COG5009 # Protein_GI_number: 17547695 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Ralstonia solanacearum # 10 768 4 750 801 733 49.0 0 MADTKKTTPARSADKSPKKAPAPRKGGSRLWGFFKGFVATCIALALAGVGLALFVFALVY SQLPPIDTVVDYKPKVPMRVWTADGKLIAEFGEERRDFVTINEIPPLVKEALISAEDDGF YQHAGIEPKGFIRAALNNLATGRKSQGASTITMQVARNFFLSSERSYIRKLYEVAMAFKI EANLSKDEILQIYMNQIFLGNRAYGFAAAARTYYGKSLQQLTAGEAATLAGLPAAPSVYN PFASPKRAKMRRDYVLGRMRDLGYISEAEYQKEVNAPIQTRLTRVAEQVGTPTRMNESLH AEYVAELVRTLMFDIFQQETYTRGLNVYTTINSEDQGYAYKALRSHLQSYDHSQGYRGPE AKVDISDPKTREQNISNALQEALIATDMPAVVALEVSPTEVKVQMSHGKVISITGKGLDF VKRALQPKAKADIKIVPGSVLRLQSNKEGYWEITQIPQAEAAFIATEYNTGAIKAMVGGY DFALNKFNHVTQAWRQPGSSFKPFIYSAAIEKGFSPQTVINDAPIVLDPSETGFKKWNPK NFSGKFSGPIMMKDALKKSLNLVSIRILQAITPRYAVDFIQRFGFDSDKHPPHLSMALGA GSVTPWQMVEGFSVFANIGRRTEPYLISKVTDASGKVLMQSTAEAEKVAGVEALDPRNAY IMHQMLHGVATSGTAARATASLKRTDIAGKTGTSNDAFDVWFVGYAGDQCAAVWMGFDQP RSLGRRAQGAGLALPVWIDYMRDAIKNEPNVVRKAPPGVTEEGGNLYYTNRKDAIPNLGL DQPATDDPIGALIHDSSVRGQIF >gi|301349839|gb|ADCQ01000011.1| GENE 6 5624 - 5953 412 109 aa, chain - ## HITS:1 COG:no KEGG:Rfer_2863 NR:ns ## KEGG: Rfer_2863 # Name: not_defined # Def: branched-chain amino acid transport # Organism: R.ferrireducens # Pathway: not_defined # 1 105 1 105 110 66 43.0 4e-10 MNDYVYLFTVFIAMGAVTAAERLLPFACSSWLRKQRWVGVVGDFLPLAIMVLLVLHASTS SALARGGLPVPEAAGVFLTLIVQWFVKKPLLSIFAGTAVYVILVNSLFA >gi|301349839|gb|ADCQ01000011.1| GENE 7 5946 - 6662 699 238 aa, chain - ## HITS:1 COG:jhp1251 KEGG:ns NR:ns ## COG: jhp1251 COG1296 # Protein_GI_number: 15612316 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Helicobacter pylori J99 # 9 221 9 225 228 124 33.0 1e-28 MQLQSSLVKNAFTASIPVCMGYIPLGIVFGFLCVQAGASWWIPPISSVLIYGGAVQYMMI PMLAADMSVASIAFATAVVNLRHVFYGLSLLDRLHSAGWKKWLIAFLLTDETYSLITTEK KDAPIDRLVLIALFDYSWWILGSLIGGLLGAAATIELAGFDFVLTSLFAMLLCEQWRGRV NSKPLWVALIGYAVARFISADNALAIAIAICALGAILFAFQKNPLLKVARSAGGSSHE >gi|301349839|gb|ADCQ01000011.1| GENE 8 6837 - 7265 349 142 aa, chain + ## HITS:1 COG:no KEGG:mru_1724 NR:ns ## KEGG: mru_1724 # Name: not_defined # Def: hypothetical protein # Organism: M.ruminantium # Pathway: not_defined # 3 140 2 139 142 130 50.0 2e-29 MFWNLFWPIALITLANCFYNICTKSTPEQANPFLSLCVTYLTAAAVCISVFIFSQSREAV SLELSKLNWTAPTLGLAVVALEVGYILTYRAGWKINTASLVTNIALAILLLFIGFLFYGE PITGRKLLGVVICCIGLFFLIK >gi|301349839|gb|ADCQ01000011.1| GENE 9 7344 - 7892 261 182 aa, chain + ## HITS:1 COG:PM1224 KEGG:ns NR:ns ## COG: PM1224 COG0703 # Protein_GI_number: 15603089 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Pasteurella multocida # 8 172 5 170 175 130 45.0 1e-30 MAVQPPNRTIFLVGMMGAGKSTIGKALAALMGTKFVDLDRELEERCGVSIPHIFETEGEA GFRCRETRLLQEYAKASDMVVATGGGVVTREENREILKASPAVAVHLKVSPEECFRRTQG TDRPLLQCADPMEKICRLLQERGPLYEEVADISYETDGMKAARAAQELLNSIHQHQLVKE QE >gi|301349839|gb|ADCQ01000011.1| GENE 10 7889 - 8971 1119 360 aa, chain + ## HITS:1 COG:VC2628 KEGG:ns NR:ns ## COG: VC2628 COG0337 # Protein_GI_number: 15642623 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Vibrio cholerae # 1 353 6 360 366 310 47.0 2e-84 MKEVQVKVPGHSYTIKLGSGVIKELPAELKRLNPSSCLIATNITVGSLYLKKATDLCNGM CRTESVVLPDGEAYKDWGSVSAILEKLASMGADRKSVVIALGGGVVGDLAGFAAAIYMRG IRFIQVPTTLLAMVDSSVGGKTGMNMTAGKNLVGTFHQPEAVIADSDFLRTLPEREIGAG IAEIIKHGVLADKTYFEELERDMEKLRALDPETVAEVVGRSCEIKAGVVSRDEKEKGERA KLNLGHTFGHAIEKLTGYGTWLHGEAVAVGTVLAAVTAEKQGKINCGDVKRIQDLIHRAG LPVRIAGISASKAIEAMKGDKKSTKGVPHFILPVAIGTTVIEEVPEGLIKEALLEEGYEP >gi|301349839|gb|ADCQ01000011.1| GENE 11 8968 - 10113 887 381 aa, chain + ## HITS:1 COG:RSc2968 KEGG:ns NR:ns ## COG: RSc2968 COG0232 # Protein_GI_number: 17547687 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Ralstonia solanacearum # 8 375 18 382 387 422 60.0 1e-118 MITEGFELADYACSSANSRGRAIEEKSSTSRTEFQRDRDRIIHSSAFRRLEYKTQVFVNH EGDLFRTRLTHTLEVAQIARTTATLLKINPDLTEAIALAHDLGHTPFGHSGQTALDRCMA DHGGFEHNLQSLRIVDLLEDQYPNFDGLNLTWETREGILKHCSRENALRLGALGERFLKG EQPSLEAQLVNIADAIAYSTHDIDDGLRVGYLDEKDLVENVPLYAEYHAQVDAEYPDIQE RRKQKEVVRRLIGYMVDDLVSTSRANIEAAQPKSPDDVRALKTPLISFSKEAQAQMRILK STLMDKLYRHYRVLRAVEKSANMITQLYQTFARTPALLPPLYQERSKRYGVERTVADYIA GMTDRYAVLEFNRVLNPAFEI >gi|301349839|gb|ADCQ01000011.1| GENE 12 10184 - 11131 1201 315 aa, chain - ## HITS:1 COG:nrfD KEGG:ns NR:ns ## COG: nrfD COG3301 # Protein_GI_number: 16131899 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Escherichia coli K12 # 13 311 10 315 318 153 34.0 4e-37 MDGAINFTIGLSEGIAWPWPIAVYLFLAGISGGAVAVALMLNFFRHKTETTPIIKSASII GLATILLGMLCLVLDLTNPLYFWRILVYYNPTSVMSIGVMLLLFYIPLVAVLMVMSFADT FSKWPLLGWVKPVCDRLEKFRVWINAVIMVLAIAICAYTGFLISALIRFPLINTAVLPAL FVASGISAGMAATKILAACCFGAREEDPDMHAMHQAEWPVMATEAFCLFMIAIALLSGNE SAKLAFSAFTDGIWAVVFWVGAVGIGFGIPLIASLIAGKNTESKVSFYFAGTCAIAGMMC LRLFILYAGQMNTIV >gi|301349839|gb|ADCQ01000011.1| GENE 13 11132 - 11872 774 246 aa, chain - ## HITS:1 COG:ECs5054 KEGG:ns NR:ns ## COG: ECs5054 COG0437 # Protein_GI_number: 15834308 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 51 240 37 215 223 172 48.0 7e-43 MSTINRRTFIKGTTASSLFVLTLAGCSEKKSAPIKSAQAQGVTQGSAKPHYVMVFDQNKC VGCGECKEACAETNKTPAGVFRLALERQNGREPGTACPYCGKIEPCDCERKYVRVSCQQC LDAPCVRVCPTQAAHRDPETNIVTMDPDKCVGCKYCIAACPYNVRFINPQTRVAENCDFC LHTKLAKGEDPACVSKCRYGALAFGDLNDPNSYVAKLLDVKDAVRVRTYLGTEPSLRYIP VMKEKI >gi|301349839|gb|ADCQ01000011.1| GENE 14 11950 - 12996 1330 348 aa, chain - ## HITS:1 COG:no KEGG:Ssed_0493 NR:ns ## KEGG: Ssed_0493 # Name: not_defined # Def: cytochrome c, putative # Organism: S.sediminis # Pathway: not_defined # 71 342 398 673 676 246 44.0 8e-64 MLTKITPLTLSCLAAIGFSAACAAEGSYNVNQINIPEKPEFMASLGIAKDAKPDLTKDQK TQLAGKAYHEKADQHFMSVHAQKGVSCNTCHDPRSLDGVAWMAVVNKPVIRQTCQDCHTV QADVFAHTDTHDKLDCIACHMPNVASAADYSTDQNAAGPKALRRIHTYKILVDPKASSMV EGEVKVGKDGTAKGYVMAKDEDGNGYVDLMWSCARNTPADYTVFEGKGCHNPATSKLDEG LIYQDQKEVYGETLKWQTPIKEGYKEIAGAIPRMRKLLEVTRLSPADQTDARLLLDKADQ IATMIKKDGSWGMHAQNYLLDQVKTAQAYLAKAQQIMDKGGYNKIATK >gi|301349839|gb|ADCQ01000011.1| GENE 15 13054 - 13851 962 265 aa, chain - ## HITS:1 COG:no KEGG:DMR_29720 NR:ns ## KEGG: DMR_29720 # Name: not_defined # Def: hypothetical protein # Organism: D.magneticus # Pathway: not_defined # 126 256 101 231 239 87 44.0 4e-16 MNHPEANSAMDAAQLKADIVLLIDLITEHSRKVELVTHEDLQDEFLSKAPLQQPIPVSQI KAEYEAIPEMERKLRNKADDSPEEKERRRLISRRQMFGSLFSGELSLADLKEEPAEAESA PREITPEYFETVLAEVLKGQYGIEDLTSWDSKHYYHFSPLLSASYARLLSTQNNPYEQIL DTVRESSRVYPRPVGVFTFEFAPFRIDPTVIQDVLDRIAEDPNAKDIRVTVTSAGTVYLY SSTYLEDAMADFLAEEMDQGEAQML >gi|301349839|gb|ADCQ01000011.1| GENE 16 13863 - 15983 2773 706 aa, chain - ## HITS:1 COG:ydhV KEGG:ns NR:ns ## COG: ydhV COG2414 # Protein_GI_number: 16129629 # Func_class: C Energy production and conversion # Function: Aldehyde:ferredoxin oxidoreductase # Organism: Escherichia coli K12 # 9 705 4 700 700 561 41.0 1e-159 MDNIQKRYGYTGQGLRVNLTTGKITKEPTFPRFKDEIGGTALGYRVFWDEVPPKTQPLDE ANKLVIAPGPFSGSGALCSSRTSITTIYPTIYPMPMIASAHIGGDMAARLKQAGYDFIII EGKSEKPVYLYINNDEVELRDAKGIWGQGTRRAQQMLADQTSPMASIAVIGPAGENLVPM SVLISARQHSGGGVGSVFGSKKLKGVVIIGDQPIHIHADKKEWQKITERNIDLFGSLNQH VVPSAPNPLFEFWAPGSRWNGMPGNVWQKANPPITLGEDMRSPNKISYRWCASQFFLGKP QGLKIQVRNNGCYSCPLRCYSIVEDEEAAARYHINKMTEQTCMSLYFGRVIFPKIATKRD LPAARQASMVGIQTMDDLGVWCNYGQLHRDFKKMYVKGLWKKVLPEKEYNSIPWQKIEDC DASFLQDLFQRIAYRQGEMGKWLGESTPYMLGHFGIPESDWSTDKSTNYWGLGHPKHHAN EDDGQVGVVLNCLYNRDPMCHGTVNFTRSGLPINVKKQIAEHFWGSGDAVDEVGDYTPTN EAKMRRLRWIICRKELHDMLGLCSWMAPWVVSPNKSENYIGDDDMEGKVYRALTGRNTTA KQLDDAGFRAFTLHRAYTMREMNEVNMRKNHDFYPAWIFTDAKDKPAFTKGTIRMDQGDI EKSFDIFFKLINWDPATGAPTEQAYKDINLEFVIPVMQKEGLIPGK >gi|301349839|gb|ADCQ01000011.1| GENE 17 16005 - 16709 896 234 aa, chain - ## HITS:1 COG:ECs2381 KEGG:ns NR:ns ## COG: ECs2381 COG0437 # Protein_GI_number: 15831635 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 49 207 53 205 208 122 42.0 8e-28 MFDLKDLMSRVNLPQDITRRGFLQVATVTAAFAAMNQSRAQTGAQPYIILETPKGLIVGD PSLCVDCQRCEMACTEFNDGKNDPVLARIRIGRNIWYGPGNPGARPLQGVWGDSTVYQDT CRQCAHPVPCANACPQGAIRVDPKTGARYVDEDKCIGCGLCQKACPWDMMSFDREKQKAS KCFLCDGEPKCVKACPAAALTYMPWKDRSGEPARRPTHGYLPEENANQCSVCHG >gi|301349839|gb|ADCQ01000011.1| GENE 18 16812 - 16961 190 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860007|gb|EFL83084.1| ## NR: gi|302860007|gb|EFL83084.1| hypothetical protein HMPREF0189_00161 [Burkholderiales bacterium 1_1_47] # 1 49 10 58 58 86 100.0 6e-16 MTTRFKEVVYAKALSRELPSVVFSATEPILLTRWTIKPVGSDGWSVARI >gi|301349839|gb|ADCQ01000011.1| GENE 19 17164 - 18333 678 389 aa, chain + ## HITS:1 COG:PAB1436 KEGG:ns NR:ns ## COG: PAB1436 COG0303 # Protein_GI_number: 14521620 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Pyrococcus abyssi # 24 383 28 399 402 132 28.0 9e-31 MNGCFVLYPFELGETLTKRINVGVSTDNSFGCELAEDVVCMEDIPPYDVSLRDGWAISTT EGNHTLVGEPVKNGEQPALLQKNGSRWINTGGFLPLAADAVVSDSDPQAPDFAADVYPYE NVLPRGTEWTKGSLILKKGTVLGAGAQALLFEAGIENIRVWKRPSAAILATGHEIAEAGA LSSAGRHSSNAVYLMNLLSGLGLTDTAIFYAKDEADSIADRLEVLAQSFDFIITVGGTGQ GKSDMLRLALKRAGAKQSEDQTKLSSSLPFVCANLKGAVLFGLPGNPLGFVNIVQRVVLP VIWQSFRTDPFFVRRQKVFMGFDYEGKAGDICVQLAPFEGRVIALPVQKGSGRSSAFRDA AAAIPNPQGRRIEAGEAVEAQLFFNGLLS >gi|301349839|gb|ADCQ01000011.1| GENE 20 18385 - 19116 236 243 aa, chain + ## HITS:1 COG:RSc2966 KEGG:ns NR:ns ## COG: RSc2966 COG1943 # Protein_GI_number: 17547685 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 1 230 1 230 241 120 32.0 3e-27 MTRLTRLSAAAQAHYVVLRSVPEISLIPFDKNIEKLFQIFSDGSRAYSTDISAFAVFTDQ IHLLLTPREKAEDLSRFVQQLSRLYSHYFNDEFSRNGKIWQGRFESSLLQGKGRLLAATI YMEWLPFVYGYGEPQFYPWSSYFHHAGIRSDYFMVPSIEYWALGNTPFERQKNYKDLFER GPDKVFGERLMSCVKRGWPIADKKFLESIGVEAERMEPQRGRGRPRKASAINPLESDTNL LNK >gi|301349839|gb|ADCQ01000011.1| GENE 21 19227 - 23912 5171 1561 aa, chain + ## HITS:1 COG:RSc2965_2 KEGG:ns NR:ns ## COG: RSc2965_2 COG0069 # Protein_GI_number: 17547684 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Ralstonia solanacearum # 403 1240 1 836 837 1185 68.0 0 MSTRSDQRKDAAEHGLYDPAYEHDACGVGFVASVKGQASHEIVTQALQILKNLDHRGAVG ADPLCGDGAGILIQIPDAFFRAEMAKQNILLPPAGDYGVGMIFLPREHASRRACEQELER VVKAEGQVVLGWRDVPVDTTIRMSKTVLETAPVIRQIFIGRGPDVMVPNALERKLYVIRK LAGHKIQALKLKHGKEFYVPSMSTKTIVYKGLLLADQVGAYYKDLNDPRVVSSIALVHQR FSTNTFPSWELAHPYRMIAHNGEINTVKGNFNWLRARERAVETAVLGDDVKKLLPIIYEG QSDTACLDNMLELLVMSGYPLAQAVMLTIPEAWEQAKGQMDPAQRAFYEYYAAMLEPWDG PAAVGFTDGVRIGAVLDRNGLRPGRYILTNDDIVILASEAGTLPIPQSQIKKKWRLQPGK MFMIDTEQGRIIEDEEIKRTLALSNPYKEWTKRLNIHLSDVVAPPPLPNNNPVPLIKRQE AFGYGEDDIKFVLRPMAEKGAEAIGSMGNDTPLAMLSHRAKPFYQYFRQLFAQVTNPPID PIREQLVMSLVSFVGPRPNLLDINNVNPPLRLELSQPILGMEEMAKMRRIDRYTGDKFRS YEIDTTYRVAWGEEGVEARLASLCARAVDAVKDGYNILILTDRKMSEERVAIPMPLAISA IHQHLIAAGLRTNTGLVIETGSAFQTHHMAVLAAYGAEAIHPYLALETIEQLYKPGNPSG IDVKTATQNYIHAIGKTFKKIMSKMGISTYMSYRGAQIFEVLGLDKEFVDRYFPGTSCKV GGLGIFDVMREAIEQHKEAFADKNHRHKLLPTLGEYQWRARGEEHMWTPEAIAKLQHATR GNSYQTYKEYAEIINDQSKRQMTLRGLMEFNVDPSRAIPLEEVEPAKEIVKRFATGAMSL GSISAEAHAVLAVAMNRIGGKSNTGEGGEDPKRYEAEMREGLSPVKKGDTLKSILGEDRI VADVPLEEGDSLRSRIKQVASGRFGVTEAYLSSADQIQIKMSQGAKPGEGGQLPGHKVSE YIAQLRYSIPGVGLISPPPHHDIYSIEDLAQLIRDLKMANDKADISVKLVSEQGVGTVAA GVAKAKADHIVIAGHDGGTGASPLSSIKFAGTPWEQGLSETQQTLVINNLRDRVRIQVDG QIKTGRDVVIGALLGADEFGFATAPLVVEGCMMMRKCHLNTCPVGIATQDPELRKRFHGE PKHVVNYFFFVAEEVREIMASLGIRKFEDLVGCSDLLRQKKMHPAKCAHLDLSRVLYQPE VDDPNKRRQSVKQNHGLEKELDYQLLDLCRNAIEKKEKVSFISPIKNIHRTVGTKISSEI IRRWGAEGLPEDTLHIQLTGTAGQSFGAFLANGVTLDLVGEANDYVGKGLSGGRIIVRCP TDFRGRGDENIIAGNTVLYGATSGEAFFNGVTGERFAVRLSGATAVSEGCGDHGCEYMTG GTVVVLGDVGRNFGAGMSGGIAYVYDEDGTFAKRCNSESVELCAVLPDKDQAASGDHSAW HLGKTDESILKDLVNRHFLYTGSQRARDILDDWPRSLQKFVKVFPKEYKQALLKGIAHSA A >gi|301349839|gb|ADCQ01000011.1| GENE 22 23921 - 25399 1152 492 aa, chain + ## HITS:1 COG:RSc2964 KEGG:ns NR:ns ## COG: RSc2964 COG0493 # Protein_GI_number: 17547683 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Ralstonia solanacearum # 1 487 1 479 487 537 57.0 1e-152 MGKVTGFMEFERLEQAHEPVAQRKTHFREFITPLSQQEAKQQAARCMDCGTPFCTFSCPL HNVAPEFNDLVYNEDWEKAYHVLSSTNNFPEFTSRVCPALCENGCIMNYTQRAMGVKSIE RAIITNAWNQGWVKPEPPKEHKDKSVAVVGSGPAGLACAQQLARMGYAVTVFEKNKRPGG LLRYGIPDFKLDKSLIDRRIAQMENEGVQFRCSTSIGVPDHPHGIWNDSERTIDVSELLR DFSVVVLAVGSETPRDLQVKGRDLKGIHFALEYLPVQNKHNASEPFDEDISAKARKVLII GGGDTGSDCLGTAIRQGAEKVLQIDLGPKPPETYDKSMVWPNWPAVMRTSTSQEEGGERD YAISTKEFLSDGEGRVRGVKAVRLEWMKDPVTGRRTFKEIPDSEFEIESDLVLLAMGFLH PSSPVMDAFGVQTDMRGNAQAAYEGKDAFRTNVPKVFAAGDCRRGQSLVVRALAEGRRCA EAVDKFLSDEQN >gi|301349839|gb|ADCQ01000011.1| GENE 23 25421 - 25879 270 152 aa, chain + ## HITS:1 COG:PA3130 KEGG:ns NR:ns ## COG: PA3130 COG0824 # Protein_GI_number: 15598326 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Pseudomonas aeruginosa # 5 125 9 132 145 73 33.0 2e-13 MERIFRFPIKVGKESIDVLGHTNNKEYLRWMEEAALAHSDSLGWTMDRYLGIGKVFVAST HKIEYLRPTFEGDELTMLTWVETMDGAKSRRCFYLKRDNKVCMQGWTEWTFVDLQTGRAA DISAEVKKNFPLVPPDDPDLKASGVRRSPSQA >gi|301349839|gb|ADCQ01000011.1| GENE 24 26072 - 26887 257 271 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 27 251 38 266 329 103 28 3e-21 MERQDNDWIVEIKDMSFSYAEGSRVILDDVSLSFRKGEVIAIMGGSGMGKTTLLKLIGGL LTPDKGEVFIDGERLNTANLESLYRIRRKMGMLFQFGALFTDMTVFNNVAFPLREHTDLP EALIRDLVLLKLNAVGLRGAAQLYPSEISGGMSRRVALARTVALDPMLIMYDEPFAGLDP ISMGVTAQLIRNLNTVLGSTSLIVTHDVQETFGIADYVYMISSGKVAAHGTPDELRQSKD PFVYQFVNGLPDGPVRFQYPAEPLNQELGLK >gi|301349839|gb|ADCQ01000011.1| GENE 25 26887 - 27675 856 262 aa, chain + ## HITS:1 COG:RSc2961 KEGG:ns NR:ns ## COG: RSc2961 COG0767 # Protein_GI_number: 17547680 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Ralstonia solanacearum # 7 260 2 255 255 261 64.0 7e-70 MGIFNWISSVGAWALSGVRTLGNFSRFLFRLVVNLGPSFTRFQDTLKQLYFVGNYSLVII LVSGLFVGFVLGLQGDYVLSSYGSEQALGVLVALSLLRELGPVVTALLFAGRAGTSLTAE IGLMNAGEQLSALEMMGVDPIRRILGPRFLACVISMPLLAIMFSAVGIIGSWVVAVPLIG LDSGAFWAQMQAGVEVGPDIGNGIIKTFVFGVAVGAIALYEGYTARATPEGVSSATTRTV VVSSLVVLGLDFILTAFMFTHG >gi|301349839|gb|ADCQ01000011.1| GENE 26 27691 - 28173 492 160 aa, chain + ## HITS:1 COG:RSc2960 KEGG:ns NR:ns ## COG: RSc2960 COG1463 # Protein_GI_number: 17547679 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Ralstonia solanacearum # 8 150 6 148 173 177 62.0 9e-45 MQNQNTKINFLVGLFVLGGIVALLFLALQAANLSSFSTSKGYEVTAYFDNIGGLKARAPV RSAGVLVGRVKSISYDNDTFQAKVVISMENQFKFPADTSAKILTAGLIGEQYIGLQPGAD DKDLTNGGRIEFTQSAVVLENLISQFMFNKAEENAGSKKE >gi|301349839|gb|ADCQ01000011.1| GENE 27 28178 - 28954 868 258 aa, chain + ## HITS:1 COG:RSc2959 KEGG:ns NR:ns ## COG: RSc2959 COG2853 # Protein_GI_number: 17547678 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Ralstonia solanacearum # 6 230 13 236 269 162 40.0 7e-40 MKKKILALALVGAALLSGCASVPKDSGQNPDDPWETLNRQTFAFNQGLDFILIRPLAKGY QFITPKPVREGVTRVFQNTMEPSNAVNNVLQGKVEEGILSLFRLMINSTVGVVGIFDVAQ MVDIPRMPEDFGQTLATWGVPKGPYFVIPVLGPSTVRDTVGLVPEVFLDPNTYVGRDWFV WPWWGAKFVNARERLLPVTDMLDKTVDPYVATRNAYLQQRQNSLQNGDGPAMIQQPLLSP FGDDDADDADKPAMDEKK >gi|301349839|gb|ADCQ01000011.1| GENE 28 28951 - 29577 699 208 aa, chain + ## HITS:1 COG:RSc2958 KEGG:ns NR:ns ## COG: RSc2958 COG2854 # Protein_GI_number: 17547677 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Ralstonia solanacearum # 39 208 42 211 211 115 38.0 4e-26 MKKLISLIVVFFLSVFGVAATAEPSLAPEKLVMDVSTQVLDEIKKDPALAAADPAHVNQL VDKKILPYTDFATMTRMAVGPSWRKANEAQRKEIMQLFRTLLVAVYSGALKEANNYTVEP AKSRPSNDPRLTIVRTRLVASQRDPIQLDYRLMNTGKDWKIFDVCVGGVWLVENYRSQFA SVIGNSGLTGLIAQLKDRVQKLEANKGK >gi|301349839|gb|ADCQ01000011.1| GENE 29 29580 - 29834 298 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860019|gb|EFL83096.1| ## NR: gi|302860019|gb|EFL83096.1| STAS domain protein [Burkholderiales bacterium 1_1_47] # 1 84 1 84 84 138 100.0 9e-32 MKLQAQHIGFDNAVAILNQGIQAIDSGDSVMDMQDVQKTDSAAVAVVLEWMRRAQARNAE LKVINAPESFQNLVKLYSLSDLIK >gi|301349839|gb|ADCQ01000011.1| GENE 30 29896 - 30411 807 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860020|gb|EFL83097.1| ## NR: gi|302860020|gb|EFL83097.1| hypothetical protein HMPREF0189_00174 [Burkholderiales bacterium 1_1_47] # 1 153 1 153 171 115 100.0 1e-24 MKLKLLAAVCAFAIGSAASAQITETVTPLVPLSPSDQQILNVQQAERQIQANEQAVALEK ARAAEKAARQRAAAQARQAKAKAEAKAAQQAKQQAAEAEAAAQKQKLQNYQDQMMQMDLE SKRLDLEAKRSKVQTEIDLNKVRQQQAIDSLKNQAPAAAPAPAQAPASAQP >gi|301349839|gb|ADCQ01000011.1| GENE 31 30447 - 30959 614 170 aa, chain - ## HITS:1 COG:no KEGG:Tola_2807 NR:ns ## KEGG: Tola_2807 # Name: not_defined # Def: 17 kDa surface antigen # Organism: T.auensis # Pathway: not_defined # 1 163 1 163 170 110 46.0 2e-23 MIKTKLLVPAVALFALAGCQTNGDMYRSDVYGSNQVNQAQQVQTVEIIAIQPARVAVNNQ SDRNVSQMVGTALGGILGAVIGNQVTHHRDSGTAIGAIAGAALGAAGSSAASPQNSLVDG VQLTFKMNGRIFNSAQVGQMCEFKYGPAIMTSTGPTSTRIQPNNPYGCKR >gi|301349839|gb|ADCQ01000011.1| GENE 32 31233 - 33992 2409 919 aa, chain + ## HITS:1 COG:yhjO KEGG:ns NR:ns ## COG: yhjO COG1215 # Protein_GI_number: 16131405 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Escherichia coli K12 # 27 871 44 872 888 773 45.0 0 MLFSQILSQVKVHTGRLSRWLTNNCSGKWSYRINMFCFGLAWLIFPIENRFYQKIVKNRT YYFPQIDFHNLRPLDPIRGLIQLSFLMFVAGSKEDAAKRLSHSTYASRFFLFRWVNHIFK RINRGTRMIAERVSKKLASEGKEKTGQHKPQHQKLSLFKKIFVGFLLAIGFVLYVLCITQ PFSLEEQVIFLLILGVIALTLFQAQTRFTLLMLIVISVIVSSRYVWWRYSETLNPNSYTS VIFTWLLIIAETYAFIVMLLGYFQVCWVLDRKPASLPKDKERWPSVDIFIPTYNEPLDVV KPTVYAALTVDWPKEKLNVYILDDGSRKEFKDFACEVGAGYIEREEHKHAKAGNINHAMG ITKGDFIAIFDCDHVPVKTFLQKTMGWFLKDEKIALVQTPHHFYSQDPFEKNLHLKENVP NENSLFHDFIQKGNDTWNATMFCGSCAIMRRKALEEVGGIAVETVTEDAHTSLKLNRRGW SSAFLSTPLSAGLSTETLAAHIGQRIRWARGMVQIFRLDNPLFGKGLTIPQRLCFLNAMI HFLHGLPRIIFLIAPLPFLFANIYVIYASAIAIFVYLIPHMVHSTMTTYMIHRGYRFPFI SALYETILSWYIFVPTLVALIAPHKGKFNVTAKGGVIDKEYLDWAVARPYFYLLLLNLAG FFIGLYRMVGASAYEVLMLLINLGWIIYNLIILFAAMAVTVESVQKRKFPRVSFTAPVHL QVGETSIPAVMSAFSQKDCVVDLKNASDLSKVSLEEPVKLVFGPKKKPSTTFDCTVTAAF ENGVVELLVSQPTRTKEMEYVECTFGTPDIWIQRQAKVRDYGMFDGFFALLHMARMGAEA FAHFSNPQAGWFLKASVWTFKWVISFIPRVPSLRRENKNSPFEETHPLYLPKTICLKQFH RLIARNNKLKSYAVRNNTD >gi|301349839|gb|ADCQ01000011.1| GENE 33 34021 - 36285 1947 754 aa, chain + ## HITS:1 COG:no KEGG:LF82_0212 NR:ns ## KEGG: LF82_0212 # Name: bcsB # Def: cyclic di-GMP-binding protein # Organism: E.coli_LF82 # Pathway: not_defined # 22 736 38 759 779 480 37.0 1e-133 MFKNKRFSLLLSGTVLCALSVALASVASAAPEPATFMRDVQPAFRTDEIPVIRKDSPLFN YSTEGAIEQIKMTGIYNERSFRFYSAKNELISKASVTLRYTPSPALIPQQSQLNVYLNGQ LQKSLPITKDQLGNQVSATVDLNAKQFDSSNRLTLEFVGQYTQICGSPANPALWLTVDSS SYLSLNTQKLRLANDLSILPAPFVNTISPSATTLPMVFASTPDNRFKEAAAVLASWAGVR SEWRGIEFPVYYNEQPAEQNYVAFVTNDSRPDFLKFLPRVEAPTISIVNAPNSLYAKVLV IAGRNADDLLTAARYLAAADAGIAGGMVTIENFKGEPDRKAYDAPSWVNTDQKIPFEKLS KYRGQLTSTGLHPAPIKLDVRLPPDLFMVNRSNVNLDLRYRYTRPMGGEPAQMRFLLNDQ LVESYDLSPTKTSNSFMSQFSFINGLANLWNNTSIPSRLLSAENQLTFDFQYGLAVDGGT QANCKSVTLIPNQVEIDPNSTIDFSGFYHFARLPDLKLFTVSGYPFTKYADLSQTLVLMK KDAPANVMTTMLNTMGRFGAQTGAPVTKVTFDSAIQNDNAQHRDILVFAENSADIDNLGK LEPEIILEKVKGNLKSNFEAKSKDAAPQSTVTEDTGIATIAQYESPYGSGRSVVAILGDG QDGSYLLNKRLMNPGDLKMVGGGVAIFKPNAQPASYMVGPDYYTGSLPWHQRVWYSLLDQ PLLLVLFTLVCALLFAGGIYYLMHSLIRFRNRRN >gi|301349839|gb|ADCQ01000011.1| GENE 34 36304 - 37401 1475 365 aa, chain + ## HITS:1 COG:STM3617 KEGG:ns NR:ns ## COG: STM3617 COG3405 # Protein_GI_number: 16766903 # Func_class: G Carbohydrate transport and metabolism # Function: Endoglucanase Y # Organism: Salmonella typhimurium LT2 # 10 349 14 358 369 248 37.0 2e-65 MKKNFLLACLISAVFAAPAGAWELWDQFKATNLTPEGRVVDYSEAKLITTSEGQSYGMFF ALVANDKKAFDEMFAWTEKNLGENQPAWLWGIPDGKPNGTGKILDTNNATDSDMWIAYCL IEAARIWNDPSYLPKADGYLAKLKELVRDVPTVGKIILPGRVGFEEKGVITINPSYYPPH ILRRFADYDPYWLPVLEGSINAMVRCSPSGVAPDWAKFDAQGRLVDPQQMEGSYNAIRTY LWSGILSPKDQNYEVLMRQYEPMINLVKATNIPPEKVNIGDMTVNNRQVNAFGACFLPYV AADKAGAVIRTVLTSTEMKGDNYYRNVLTVFGLGFDNRTYAFDEKGRLILPTDNVAVKTM TPKNN >gi|301349839|gb|ADCQ01000011.1| GENE 35 37420 - 39072 1608 550 aa, chain + ## HITS:1 COG:no KEGG:ETAE_3389 NR:ns ## KEGG: ETAE_3389 # Name: not_defined # Def: putative inner membrane protein possibly involved in cellulose synthesis # Organism: E.tarda # Pathway: not_defined # 13 550 17 556 556 438 43.0 1e-121 MAATEKNKQTKVKWTGLGLWNVFFIGEFLLGGFGYLSLNLLQNVLLLVFVLFPIGNRYLR WFRTLVAVVCAAALVYSESWLPGLDSIRGNFHNLAAMEGGYLLDSALNFLNFEMIGAGIA LIIIYYAIRDYIRVTTFTVGYLFILLCAPLWQPFVAQLRAPAPATEVVASVDNAKKPAEE EKKSDLIPQTAEPTSKNLDEWLKRFHDTEKDRRAEWPDKLAKDSTPFDILLLNICSLSND DLKAVGLENHEVLKQFNIRFENFNSATSYSGPAALRLLKSVCGQPSHEDLYEGRNPDCEI MNRLARLGYNQHVFMDHSGKYDNFYQSLRHLAGLSPQLAEMKYPKRYDSFDEEPIGDARA VFKDYENTIAADKGGRSATFINMIALHDGNRFANKRRLAPFKPRAQAMLDDLGSLITDLE KSGRKVMLVVVPEHGAAEKGDKVQVAHLRDIPSPAITHVPALVKFIGVTPADSPVTVDTK TSYLAVSSLIGRVLETNYFGKPEGEVPLKDLVKDLPQTHSVSENANAKVVNYKGKDYVKM DNKDWREYAK >gi|301349839|gb|ADCQ01000011.1| GENE 36 39201 - 40454 1373 417 aa, chain + ## HITS:1 COG:RSc2953 KEGG:ns NR:ns ## COG: RSc2953 COG0766 # Protein_GI_number: 17547672 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Ralstonia solanacearum # 1 417 1 421 421 501 64.0 1e-141 MQKLVITGGVALEGEIKASGAKNAALPLLACALLTDEPMTFVNVPDLADVHTMLKLLEEL GCKVTQEGHKVTIDASHITSTEAPYDLVKTMRASILVLGPLLARFGKAQVSLPGGCSIGA RPVDQHIKGLKALGADISIEHGYVTAHADKLIGTNIVTDMVTVTGTENLLMAAVLAEGTT VLANAAREPEVADLANCLVKMGAKIKGIGSPQMEIEGVKKLHGTTYRVISDRIEVGSFLV AAVMTKGKVRVTDCDPHTLTAVIEKLEEAGAKVTVGDDWIEVDGTGEHQAVDIRTAPYPG FPTDMQAQFMALNTTAKGASHVAETIFENRFMHVPELQRLGADITIDGNNAVVRGVDLLS GAPLMATDLRASAALVIAALAADGESTVDRIYHLDRGYEKMEQKLSSLGAKIKRVKA >gi|301349839|gb|ADCQ01000011.1| GENE 37 40451 - 41092 792 213 aa, chain + ## HITS:1 COG:NMA1768 KEGG:ns NR:ns ## COG: NMA1768 COG0040 # Protein_GI_number: 15794661 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Neisseria meningitidis Z2491 # 2 213 6 217 217 264 65.0 1e-70 MITLALSKGRIFTETLPFLAAAGIYPLEDPETSRKLIIGTNNPDLRIVVVRASDVPTYVQ YGAADMGVAGKDSLYEHGGAGLYVPLDLNIAKCRMCVACPRDFDYAARVKRGARLRIATK YMKYSRDYYARVGVHVDLIKLYGSMELAPISGLSDAIVDLVSTGATLKANNLVEVETIDY ISSRLIVGSTAMKLKRQELLPLIEIFANTVKKE >gi|301349839|gb|ADCQ01000011.1| GENE 38 41089 - 42399 1702 436 aa, chain + ## HITS:1 COG:NMA1770 KEGG:ns NR:ns ## COG: NMA1770 COG0141 # Protein_GI_number: 15794663 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Neisseria meningitidis Z2491 # 3 430 1 428 429 530 61.0 1e-150 MSIRRLNTQQPDFAAKFSELVAVDSSVDPEITRRAEAIVQDVRARGDEAVLEYTNRFDHM DAKSVAEFRLTEDDLKEALETLPKDQKDALTQAAQRIREFHEHELGQSWSITEEDGTKLG IRYIPLDSVGLYVPGGKAAYPSSVLMNAMPAHVAGCKKIVMVVPTPGGKPNQLVLAAACL AGVKECYTIGGAQAIAALAYGTETIPAVDKIVGPGNAYVAAAKRYVFGTVGIDMIAGPSE ILVICDGKTNPDWIAMDLFSQAEHDELAQAILLTDDAEFADKVAESIDRQIKGMSRKDII SASLNNRGAIIVTRSIEEACKVADTIAPEHLELSVQDADKYIDQIHHAGALFVGPYTCEA LGDYCAGPNHVLPTSRTARYSSPLGVWDFQKRMSVLKVSKHGAEKLGRIADVLARGEFLT AHAASAMYRVHDLEKK >gi|301349839|gb|ADCQ01000011.1| GENE 39 42410 - 43000 624 196 aa, chain + ## HITS:1 COG:RSc2950 KEGG:ns NR:ns ## COG: RSc2950 COG0131 # Protein_GI_number: 17547669 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Ralstonia solanacearum # 1 196 1 196 196 256 63.0 2e-68 MTRRADVKRQTAETSILVSMDLDGSGKADIRTGIGFFDHMLHQIARHGQIDLTVMCDGDL HIDGHHSVEDIGIAMGQCLAKALGDKAGITRFGSAYVPLDEALSRTVLDISGRPYLVWNV DFTAAMIGEFDTQLPREFFLALANNARITLHIDNLRGINAHHQCESVFKSFGRALRMACE YDPRARNVIPSTKGVL >gi|301349839|gb|ADCQ01000011.1| GENE 40 42997 - 43632 696 211 aa, chain + ## HITS:1 COG:RSc2948 KEGG:ns NR:ns ## COG: RSc2948 COG0118 # Protein_GI_number: 17547667 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Ralstonia solanacearum # 3 211 4 217 217 248 55.0 5e-66 MKIAIVDYGSGNLRSVSKAIEKIAPISTQVLVTGDPEEVLKADRVVFPGQGAMPDCMKNL RTTGMEEAVRDAIRNKPFFAVCVGEQMLFEHSEEGDTPGLGIFPGDVVRFASDRVDQTGA RLKVPQMGWNQVTQTREHPMWNGITNGAWFYFVHSYYAKPTEADLTVGTTFYGEEVTVAV ARDNVFATQFHPEKSAAAGLALYQNFLTWNP >gi|301349839|gb|ADCQ01000011.1| GENE 41 43645 - 44418 1026 257 aa, chain + ## HITS:1 COG:RSc2947 KEGG:ns NR:ns ## COG: RSc2947 COG0106 # Protein_GI_number: 17547666 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Ralstonia solanacearum # 1 248 1 247 247 272 56.0 5e-73 MLLIPAIDIKDGHCVRLRQGDLTSNITVFNTDPVAQARHWVELGAERLHLVDLDAARSGK PVNLSVIRKICSEFAEDVEIEVGGGMRTLERVGEVLDLGVDYVVIGTAAVKAPGFLHDVC SEYGGSVIVSLDAKDGMVMTDGWTKNTGHSATDLAKKFEGYGVDAILYTDISRDGMLTGC NVEATAELASQLSIPVIASGGIRDLDDIRKLLAVEDDGVTMAILGRSLYEGTLDFTQALD LVEATEAAKDNQANNEG >gi|301349839|gb|ADCQ01000011.1| GENE 42 44423 - 45184 1037 253 aa, chain + ## HITS:1 COG:RSc2946 KEGG:ns NR:ns ## COG: RSc2946 COG0107 # Protein_GI_number: 17547665 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Ralstonia solanacearum # 1 252 1 256 256 363 75.0 1e-100 MLAKRIIPCLDVTGGRVVKGTNFVDLRDAGDPVEIARRYDEQGADELTFLDITATSDERD LILKVIEDVAAQVFIPLTVGGGVRKAEDVRRLLNAGADKVSINSAGVNNPDLIAEASSIY GSQAIVVAIDAKRRSDGTWEVYTRGGRTPTGIDAVEWAKKVEKLGAGEILLTSMDGDGTK AGFDLELTRAVSDSVSIPVIASGGVGNLQHLVDGIVEGHADAVLAASIFHFGEYTIEEAK RYMQERGIPVRLD >gi|301349839|gb|ADCQ01000011.1| GENE 43 45199 - 45585 354 128 aa, chain + ## HITS:1 COG:NMA0837 KEGG:ns NR:ns ## COG: NMA0837 COG0139 # Protein_GI_number: 15793807 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Neisseria meningitidis Z2491 # 1 127 5 131 131 145 54.0 1e-35 MIEEVRFNLDGLVPVIAQDAHDGTILMLAWANKEALEETLRTGFGTYFSRSRQKLWRKGE ESGNRQKIFEILLDCDGDSVIYKVEQKGNIACHTGHRSCFYRSWDGKDWKENAPVLKSPE EMYGKGHH >gi|301349839|gb|ADCQ01000011.1| GENE 44 45597 - 45923 407 108 aa, chain + ## HITS:1 COG:NMB0603 KEGG:ns NR:ns ## COG: NMB0603 COG0140 # Protein_GI_number: 15676507 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-ATP pyrophosphohydrolase # Organism: Neisseria meningitidis MC58 # 6 108 5 107 107 107 56.0 6e-24 MERVPVISEIADVIDSRKGGDPKVSYVAKLFSKAPDAALKKVGEEATEVVMAAKDGDRDH LIYETADLWFHSMVVLSQAGIRPEEVLQELARREGTSGLVEKANRKES >gi|301349839|gb|ADCQ01000011.1| GENE 45 46015 - 46359 332 114 aa, chain + ## HITS:1 COG:NMA0806 KEGG:ns NR:ns ## COG: NMA0806 COG0537 # Protein_GI_number: 15793780 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Neisseria meningitidis Z2491 # 4 108 2 106 107 130 58.0 6e-31 MQKEDCLFCKIARGEIPSQKVYEDDEVIAFKDIHPAAPVHLLIIPKQHYDSLAVMGKAEE PLLGKMLALAPVLAKEAGANNGFRVVINTGHDGGQEVNHIHVHVLGGPRPWTKL >gi|301349839|gb|ADCQ01000011.1| GENE 46 46369 - 46608 187 79 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90022866|ref|YP_528693.1| ribosomal protein L25 [Saccharophagus degradans 2-40] # 1 79 3 82 83 76 52 3e-13 MGSLSIWHWLVVLVIVVLIFGTSKLKNMGKDLGGAVKGFKEGMKEAQDEPAKPAQVADQK PAEAPAAKEEAKPEEKKQA >gi|301349839|gb|ADCQ01000011.1| GENE 47 46630 - 47412 863 260 aa, chain + ## HITS:1 COG:NMB0600 KEGG:ns NR:ns ## COG: NMB0600 COG1826 # Protein_GI_number: 15676505 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Neisseria meningitidis MC58 # 1 95 1 95 228 80 41.0 3e-15 MLDLSMGEIGVIAAIALVVLGPDKLPQVAKTAGSLMGKAQRFVSQVKNDIDKEVELSELK KIQEDAKKMASDLQSSLKNTTDSIEKQVSDVRDSVTSAGQEVKSMMDNASKELKDQWMES TAPKAELSMENIVDGTAKTETASTSVAAGQGKNAAWENLDKSVDTSMLEKAFDWGASDIK PTLPQELSGPAPTVDSYNFGQAPANAPMADPNAPTLADLMREINALKQQVEAQKVASVSK TGAGRFAPRSHVNKTRISRV >gi|301349839|gb|ADCQ01000011.1| GENE 48 47416 - 48207 829 263 aa, chain + ## HITS:1 COG:NMB0599 KEGG:ns NR:ns ## COG: NMB0599 COG0805 # Protein_GI_number: 15676504 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Neisseria meningitidis MC58 # 20 256 11 247 256 247 51.0 1e-65 MSDKDLVERPEDGPEDDREQTLVAHLIELRSRIVRMAVSVLLVFACLSPFMKQIFDYLSK PLMVALPQGAKLLATGVIAPFMVPLKVTLFVAFVIALPYVLWQLWGFIAPGLYRKEKKLA APIIISSLVMFFLGMAYCYFIVFRMVFQFIAGFSPNSVNFAPDIDSYFSFVLALFLAFGL TFEVPIIVVVLNRMGITSISKLKKARPYMVVGAFVLAAIVTPPDVLSQCLLALPLVILYQ VGIWLCAVFGKKDEPEEESAESS >gi|301349839|gb|ADCQ01000011.1| GENE 49 48283 - 49464 532 393 aa, chain - ## HITS:1 COG:BS_ydgK KEGG:ns NR:ns ## COG: BS_ydgK COG0477 # Protein_GI_number: 16077635 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 11 363 11 369 402 182 34.0 1e-45 MEKESSQGYFLYLVLFLGLLNGFGPFVIDMYLPALPEMTHVFKTSASVIQLGLTFCMGGL AVGQVLLGPVSDRFGRKAVLLFSLFLYLSATVGCLCSESIWIFTFFRFLEGIGAAGGIVL SRSVATDLYHGRQLAKIIAFISAINGLAPIAAPLSGGLVAQIVGWRGIFLILLSLGICLT LGSLFFRESLPPDRRSGAGWKNVLKGFGDILREKGFIPASLAYACSISAIFCYISAAPFI IQQEYNLSGVQFSLIFAFNALVIACGSILSVKFSSVEKSLKFGALLAFFGAGCCLLLYFL SQSLLAYLVPVALMLFGLGFMFPSSTTLAMEKGRKYAGIASSVVGGLGYLAGGLAAPLVG IGDIKLASFSWSFVFLLAGLLLIFFCDHRKTRL >gi|301349839|gb|ADCQ01000011.1| GENE 50 49467 - 50177 396 236 aa, chain - ## HITS:1 COG:APE1797 KEGG:ns NR:ns ## COG: APE1797 COG3382 # Protein_GI_number: 14601632 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Aeropyrum pernix # 44 220 46 218 229 81 31.0 1e-15 MNNSFSVEKKVFEVLPDYCVGVIRTSIPNKEGAANAVSELFRKELQRFFHQSQGVALRET KNISAYRSALQKAGINPNKFMCSIEALSRRVQKSGVLPEIDPIVDLGNAISLKYLLAVGA HDLANAQENSIAVRFSEAGDLFRPMGTLTDEAVPEGELVYVSRHQVKTRRFIWRQSDDGK ITNLTTEYLIPLDGFIGTNDDDVIKARDEFASLLTEWFGASVSTGFVSKENNIFNF >gi|301349839|gb|ADCQ01000011.1| GENE 51 50170 - 50817 284 215 aa, chain - ## HITS:1 COG:BS_ydfL_2 KEGG:ns NR:ns ## COG: BS_ydfL_2 COG4978 # Protein_GI_number: 16077613 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator, effector-binding domain/component # Organism: Bacillus subtilis # 59 211 2 153 153 80 31.0 3e-15 MGMTLEAIGEFLRDRNVSGILELLEAQKMEIAAKQRELKITKRKLERRIQSIKDALGSPI DEIQLVTLDKQKFLLLETKLVNPDNDDLEMAVQELEKNQKDSLVFLGKVGLGISKNHLKE GSLETYDFVFLMLDKEDSFSGKVLTTPPQLGVVTRFKGLHKEAPAAYTKLLEFISANNLE ITDFSREITLIDSGFTSDQNLYVTEIQIPVRQKNE >gi|301349839|gb|ADCQ01000011.1| GENE 52 51418 - 52107 490 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860042|gb|EFL83119.1| ## NR: gi|302860042|gb|EFL83119.1| hypothetical protein HMPREF0189_00196 [Burkholderiales bacterium 1_1_47] # 1 229 1 229 229 462 100.0 1e-129 MTQTDIKPFTKEDLEKADVQLLRDGRWGNARVSVANINGKRWTIKDFSDRRWLVKNSFAK FVLWRELKAVRKLHGLEGVPTEAFMVTPHMLAIEYIPGRVLNRVPKEEVSPTFLEECEEI IRSIHARHLVHLDTRGTSNWVMQVNGKPALIDFQASVDTQGLPQKIRSFMEDMDIGGVYK KWKKYCPDEMGEFREKENERIAKLRKLWVLRGYFGVKKRNAKHGKPIDN >gi|301349839|gb|ADCQ01000011.1| GENE 53 52137 - 53798 1969 553 aa, chain + ## HITS:1 COG:RSc2913 KEGG:ns NR:ns ## COG: RSc2913 COG0488 # Protein_GI_number: 17547632 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Ralstonia solanacearum # 1 551 1 553 555 891 78.0 0 MAQFVYTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGAGKSTLLKIMAGVDTEIE GEAIPMPGIKIGYLPQEPVLDPEKTVRETVAEGLGDIFDAQEKLNKVYEAYADPDADFDA LAAEQARLEAIIATGGTNADTQMEIAADALRLPPWDAKIGNLSGGEKRRVALCRLLLSKP DMLLLDEPTNHLDAESVDWLEQFLQHFPGTVVAVTHDRYFLDNAAEWILELDRGHGIPWK GNYSSWLDQKEQRLELEQKKEDARIKAMKHELEWVRQNAKGRQAKSKARLNRFEEMSSYE YQKRNETNEIFIPVADRLGDKVIEFKNVSKGFGDRLLIDDLSFSIPPGAIVGVIGPNGAG KSTLFKMITGKETPDSGEIDIGPTVKLSAVSQTRESLPNDKTVWEAVSDGLDILKVGKFE MPSRAYLGRFNFKGGDQQKIVGTLSGGERGRLHMAKTLLAGGNVLLLDEPSNDLDVETLR ALEEALLEFAGCAMVISHDRWFLDRIATHILAFEGDSKVEFFAGNYTEYEADKKRRLGDA AIPHRLRFKPLKS >gi|301349839|gb|ADCQ01000011.1| GENE 54 53807 - 55657 927 616 aa, chain + ## HITS:1 COG:RSc1709_1 KEGG:ns NR:ns ## COG: RSc1709_1 COG4121 # Protein_GI_number: 17546428 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 14 270 16 273 273 224 47.0 6e-58 MTIVQGKISLDDRGCAYSPEFGDVYASKDGAYEQSRFVFLGGTQLPERWQGRDQFTIVEN GFGLGTNFLTTLKAWREDPQRSGKLFYLAIEGFPLQASDIKTFASLSLKAEAEELAAKWP TLTPGVHRLTFDEGRVVLDLYFMPSSAAVKKLSGAFDAFYPDGFSPKKNPEMWEPRLLKA ICSHAREGATLATWCVASAVRKAFTEAGFTIQKVPGFGHKSEMTVGRFEPKFKHRRSTTF LNSAEKPQSAIVIGAGLAGSAVACELARRGVQVQVVDAGPVGASGASALRWGVVHAQPSG DDNQLFRLTRSGLEMLREELLCYPELVRTEGLYQMARDGAELQKWQQQFAQLKPFSFPKD FLRLMSAEEAESKIGLKPRLGGLWHEGAGIVAVAEWVRARLNRSGASLLFNTRVGSLSKQ GKNCQAKDAFGQIIAEADAVVVCCAAETANLLPGIELPLTRWKGRLSLLCEGALTDLKGA VTGPGYAIHSPDDWIGVGATYESADKQMSSEEAHGKNLSHLTDLFPQLTEADAAGFYEGF RCVAPDRLPVVGQVPAAEGFPNATGIYVSCAMGSRGTVFNELAAKVIAAQMFNEPIPLEA DLLCAIDPGRFFKKPR >gi|301349839|gb|ADCQ01000011.1| GENE 55 55728 - 56639 714 303 aa, chain + ## HITS:1 COG:lin0788 KEGG:ns NR:ns ## COG: lin0788 COG2962 # Protein_GI_number: 16799862 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Listeria innocua # 3 303 7 304 308 172 32.0 5e-43 MTAQTKGLLAAVGAYLCWGFMPLYWALFGGVRGWEVIGHRVLWSLILISAFLMLIGRFSE IFSTLRTFKKQPIQYFNLFAAAAIAAINWWINVYAATSNQVVELGIGMFLTPLFTVALGV VFFRERLSRLKQLSVFLPFLGVCIMIYTLGRMPWIALGVSSSWALYGVFKKRLGIDPWVS NALEASLMLPFAIAYLFYLDANGVGAFLAGGTYITILLISVGLVTSVPMIAFSAAANVLP LTILGFIQYMNPILTLIVGLVFFHEPFNHQQLIPLLFIWAGILTFIYSEFKEKAARKVQA ARA >gi|301349839|gb|ADCQ01000011.1| GENE 56 56786 - 57142 291 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860046|gb|EFL83123.1| ## NR: gi|302860046|gb|EFL83123.1| hypothetical protein HMPREF0189_00200 [Burkholderiales bacterium 1_1_47] # 1 118 4 121 121 224 100.0 1e-57 MFIVSRYRAPWVAFAFIAVVSIGAFMRFQQSAETDAKNLELDRAEFQLFKKDLAPINLPE KMMNSTVLFELFRCGVRSINEAGYCNKIGEDFFSQLSDEQKKAIRPIFNKYFSNRPVR >gi|301349839|gb|ADCQ01000011.1| GENE 57 57154 - 57981 919 275 aa, chain + ## HITS:1 COG:RSc0701 KEGG:ns NR:ns ## COG: RSc0701 COG1968 # Protein_GI_number: 17545420 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Ralstonia solanacearum # 1 275 1 291 293 295 53.0 4e-80 MDWILYLKAVILGIVEGLTEFLPVSSTGHLIVAGSLLDYTGQEADTFYIAIQAGAIFAVC WHYRQRLIDICLGLFSDKVQQRLAINTIVAFLPAAVIGVLVASYIKKWLFNPIAVATALV VGGVIILIVEYFQDKKTYKPRVETMDDMSWKDALRVGFLQCLAMIPGTSRSGATIIGGLC IGLSRKAATEFSFFLAIPTIFGATVYDLWKSRDVLTATALPMISVGFVVSFFSALVVVRW LLHYVSKHDFSAFGWYRIFFGGVILLTWWTGLVQW >gi|301349839|gb|ADCQ01000011.1| GENE 58 58044 - 58766 931 240 aa, chain - ## HITS:1 COG:NMB1328 KEGG:ns NR:ns ## COG: NMB1328 COG0220 # Protein_GI_number: 15677194 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Neisseria meningitidis MC58 # 17 240 19 237 238 241 52.0 1e-63 MSTEPLTPEQIEELKKRHIRSFCMRRGHISNAQEKALEELLPLYEIPYDANQMFDAVKTF GNNNPLVLEIGCGMGETTAAIAQAHPEINFIGCEVFAAGVGALSKRLHDMNLKNVRIFRH DAVEVVRDMLEDNSLDGVHIFFPDPWRKARHHKRRLINESFLKLLVPKMKKGAYFHCATD WENYAEQMLEVLSAEPTLENLHEGAAPQPENPLIKRPTTKFNERGNRLGHGCWDFVFRKI >gi|301349839|gb|ADCQ01000011.1| GENE 59 58985 - 59704 450 239 aa, chain + ## HITS:1 COG:mll0983 KEGG:ns NR:ns ## COG: mll0983 COG4566 # Protein_GI_number: 13471099 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Mesorhizobium loti # 12 226 20 234 246 142 38.0 6e-34 MGDVQSALVECPQRIEPMTTYSKREKLKPLIRIVDDNQAILNSLTFMLTCEGYEVASFSS AEAFLAGDTPSREGLLILDVQMPGLSGLELFKVLNMRAYKLPIIFLTAHADVDMAVAAMR EGACDFHQKPINPETLLPAIARGLEKARISKSGLGDIKEEVERFKALTEREEQICRLVAK GLVSREIAERLVISQRTVDHHRTAALSKLNIREPAELALFFERIDAWRKSAGHAGQNLF >gi|301349839|gb|ADCQ01000011.1| GENE 60 59696 - 61399 942 567 aa, chain - ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 23 557 51 564 571 125 24.0 2e-28 MLVSPLARPNGQEDIIPQTFRALQEVFGPNNFRAVLFSGNPEDIKDADLVLGSTGTYLRM PNKGLRDLATVASDLHPDPNKAEGSLFVTLKSRNDINTLEDMKGKRLAATGPNGFAGHDL ALGELAQRGQDPDHFFSSEIYTHYDMPAVLTKLRNNQADIGIIRNCLLENLKKQGDNVDD IKPLLVKDVGESERCLTSTDLYPNWTIAATPRLSPELSRRVVLKLFSLPSNPGGLHWTVA SDYSGADAMYKQIRRGPYAYLREWNLKRFWDMYWPWCLLGLVLLATGIAHNIRTGYLVEK RTRQLRESFQNQRRLEEKARRAQEKMASLQKTGVVGQMSLIVAHELRQPLSAISGYLHGI ERLLDQNNPANSAMLSSGIGAIKSQAKTAESILEKVRSYARKKGQPRSLLNANEIVLEAV NTLNEAMLSPTKVTFSGLKGRDDKIWSDKTELELAVQNLLKNALHAVSSEKNPSVSVSVH KEKSSGGSPRIAISVSDNGPRLSDEAFEKLSSVLSSSKIDGLGLGLSIVRLIVENHGGQL EFFRGPENGLKAVIFLPEADENPGSSE >gi|301349839|gb|ADCQ01000011.1| GENE 61 61731 - 63194 1548 487 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 9 486 19 482 484 191 31.0 2e-48 MVSRRNMLKTGLTAVFGACAVQTASASEVQQKSQNNFDVVILGAGTGGLVTAIEAADLGL KPVVLEKMECSAGNSLYASGGIAAWGTSQQKEEGRNETKESFREDMMKVSEYRADPALVG AYVNHIPEDFEWLKKQGVKFSKIGKKPWPLNYRMHNVDGQGLTGGARLVRYLLEACEKRN IPIIYNTKAIELLTNDAGRVIGVRAQGDLHKTDYFAKDGVVIATGGFSANRELLCRYMGG PLSRLVLRGSPYVTGDNLMLTAPVGAQLVHIDQFHCGPIVEETHANPNFVIDAGQGIDVD VRGHRFMDEIYTYTQKSMATATKTPENMAYHIIDAHWPKAESAAKKFLAMNTKVLVAQTP EELAKRMGVDPKVILSLFKEYNDALAANKLKELNPPCSLKEPQPLNKAPYYAFPFQGGIT ATFGGPKINANAQVINNEGRVIPGLYAVGNAAGGLFYGNYIGGTQLGGATVFGRIAARKM ASLHKNN >gi|301349839|gb|ADCQ01000011.1| GENE 62 63210 - 63536 192 108 aa, chain + ## HITS:1 COG:no KEGG:Glov_0887 NR:ns ## KEGG: Glov_0887 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 4 101 21 119 136 75 41.0 4e-13 MKHLLVLVLSALTASVVFAQPYTADRHLARKVPCQACHVTGDTSVPVRKQNCLACHQSYE VVAQKTKDLKPNPHFNHYGERDCSTCHSGHKPSVTSCNQCHKFDLKTP >gi|301349839|gb|ADCQ01000011.1| GENE 63 63714 - 64166 124 150 aa, chain - ## HITS:1 COG:alr3535 KEGG:ns NR:ns ## COG: alr3535 COG0454 # Protein_GI_number: 17231027 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Nostoc sp. PCC 7120 # 4 147 3 150 156 111 37.0 4e-25 MLLIRKYQASDCADLAELFYSTVHTANAKDYSKEQLDAWAPRSRNLKDWNRDFEKHISFV AIDDRTIVGFGDIEENGYLDRLFVRPDYQRMGIGTAICNKLEGAVQGNVFTHASITAKPF FEKRGYKVIKRQTVKRRGVLLTNFVMEYRR >gi|301349839|gb|ADCQ01000011.1| GENE 64 64471 - 65220 337 249 aa, chain + ## HITS:1 COG:no KEGG:Desal_3183 NR:ns ## KEGG: Desal_3183 # Name: not_defined # Def: 4Fe-4S ferredoxin iron-sulfur binding domain protein # Organism: D.salexigens # Pathway: not_defined # 4 249 6 263 263 153 36.0 6e-36 MSSIALVYFSPTGNTKKAVSSIGELPCVTVKTFDITGNVEVPETDLSGFDFVVFGAPVYA GRIPACSVDRFKRMKGSGTPCALVLTYGNRAYEDAPRELGDIAEANGFRIKGVATMASQH TYGQIQLGRPNKDDIAELQEFYFHMLAKAEEPETVIPPGNYPYKVVETKAKFKPTTNGNC LACGMCIRDCPVGAIEEDIKTVNDNCIGCMRCVKNCPMKAKSVVADAFSDFEKLLSERLK NRKENEFFV >gi|301349839|gb|ADCQ01000011.1| GENE 65 65333 - 65986 951 217 aa, chain - ## HITS:1 COG:RSc0921 KEGG:ns NR:ns ## COG: RSc0921 COG2011 # Protein_GI_number: 17545640 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Ralstonia solanacearum # 1 217 1 217 217 234 69.0 7e-62 MSSNIINLLWESFLETILMVGVSGGLGAAIGIPLGVFLFVTSPKGIMPKSYVNRIIGTVV NAVRSTPFIILLVAIIPFTRLIVGSSIGTVAAIVPLTIAAAPLIARLVETSLREVDKGLI EAAQSMGATNTQIICKVLIPEAMPGILAGLTIAFVALVGSSAMAGAVGGGGLGDMGIRYG YQRFMPEVMAAVVIILIVFVQSLQSFGDWMVRRVSHR >gi|301349839|gb|ADCQ01000011.1| GENE 66 65976 - 67034 1397 352 aa, chain - ## HITS:1 COG:RSc0920 KEGG:ns NR:ns ## COG: RSc0920 COG1135 # Protein_GI_number: 17545639 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Ralstonia solanacearum # 1 352 1 350 350 394 56.0 1e-109 MIELKHITQEYDTADGKGKFFACKDVNVHVKPGDIFGIIGRSGAGKSTLVRCINLLNRPT SGSVIVDGKDLTKMSESELREERRSIGMIFQHFNLLSSRTVYGNVALPLELAGMPKDKIR EKVMPLIELVGLSEHVNKYPSQLSGGQKQRVGIARALSSDPKILLSDEATSALDPETTQA TLQLLKKINKELGLTIVMITHEMDVVKQICNRVVVMNKGVVVEEGDVLEVFRDPKNEVTQ AMLGTALAARTIPASMVERVKKVLNTPGENERKNHLIRLTFVGSSTTEPVLSRACSKFDL DFNILLGQVDEIQSESYGTLTIVMEGTTENFRQALNYIAERGVRVEELTNVI >gi|301349839|gb|ADCQ01000011.1| GENE 67 67444 - 68805 1237 453 aa, chain - ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 30 439 62 471 502 197 34.0 3e-50 MRKTILAAVLTSVLIPGYAVALEDLHTGTVIVGSGISGLTTAILLKEHKQNVLVLEKMPF MGGTTNLAAQYFVSVGTKDQVANGKELSVPDYIKRTAKTGRNAEMLPRTTQRMFDSQKSI DWLNSLGTGLTRPVSDYQMGIADGSSLGTRLMKVLSAKVKELSIPVKMNSKVLDLIIRDG KAVGVVVENGKEKYKVFADNVVLATGGFNQNQKLISKYAPQWKGLPTTTAVGSTGDGLIL AEKYGVNIKNAGEVGLNPSIHSQGGKNVSMSAARLEGGIMVNLKGERFCNDYWPDYTKMA QAMLEQPEGKSFVIIDGKSMKASKRLQSFLKSGYFVEAQTIPELAQKIGIPPENLEKTIK RYAEFVRNGKDLDFGRSINMKTDFSTPPYYASAILPGTQVSVGGVDVNDFMQCVKADGKV IPNLYAVGELTYDSGTPHGVWSGRRAAEHILSK >gi|301349839|gb|ADCQ01000011.1| GENE 68 69344 - 69745 248 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860058|gb|EFL83135.1| ## NR: gi|302860058|gb|EFL83135.1| putative transcriptional regulator LYSR-type [Burkholderiales bacterium 1_1_47] # 1 133 148 280 280 241 100.0 1e-62 MGDYPPPLIPLPLTACPLGLFASPTLEISESCFFLPGSVPELSVIAASVKSGPYGFFKRF LDRRGIRLGKTMQVGNMHIVKALLESGLGVSYMPKACVEKELAEGSLVEVPTGLGKIDLG LLLLKNATEILRF >gi|301349839|gb|ADCQ01000011.1| GENE 69 69845 - 69971 134 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 42 1 42 595 87 100.0 4e-16 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKI Prediction of potential genes in microbial genomes Time: Fri May 13 05:35:03 2011 Seq name: gi|301349838|gb|ADCQ01000012.1| Burkholderiales bacterium 1_1_47 cont1.12, whole genome shotgun sequence Length of sequence - 6240 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 8 - 259 283 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein + Term 319 - 354 -0.6 - TRNA 456 - 531 90.0 # Lys CTT 0 0 - TRNA 537 - 612 94.4 # Lys TTT 0 0 + Prom 751 - 810 3.9 2 2 Op 1 14/0.000 + CDS 873 - 1976 1547 ## COG0468 RecA/RadA recombinase 3 2 Op 2 . + CDS 1976 - 2452 356 ## COG2137 Uncharacterized protein conserved in bacteria 4 2 Op 3 39/0.000 + CDS 2513 - 3679 1249 ## COG0045 Succinyl-CoA synthetase, beta subunit 5 2 Op 4 1/0.000 + CDS 3681 - 4577 950 ## COG0074 Succinyl-CoA synthetase, alpha subunit 6 2 Op 5 . + CDS 4584 - 5294 868 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 5317 - 5353 4.7 7 3 Tu 1 . - CDS 5364 - 5858 387 ## COG3467 Predicted flavin-nucleotide-binding protein - Prom 5934 - 5993 7.5 + Prom 5913 - 5972 3.7 8 4 Tu 1 . + CDS 6018 - 6240 132 ## SYN_01317 transposase and inactivated derivatives Predicted protein(s) >gi|301349838|gb|ADCQ01000012.1| GENE 1 8 - 259 283 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 83 513 595 595 168 100.0 9e-41 MKENKKAGKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAG PETPEDVQEEPEAETLLGTDIEI >gi|301349838|gb|ADCQ01000012.1| GENE 2 873 - 1976 1547 367 aa, chain + ## HITS:1 COG:NMB1445 KEGG:ns NR:ns ## COG: NMB1445 COG0468 # Protein_GI_number: 15677302 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Neisseria meningitidis MC58 # 17 339 2 325 348 440 71.0 1e-123 MAEKKKVKPPVEQLVDADARKKALKMALDQISKQFGKDAILSMGSQPDQNLDVVSTGSFT LDLALGVGGLPRGRIVEIYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKA LGVKVDDLLLSQPDSGEQALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGL QARLMSQALRKLTSSIKKSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIR RTGGIKQGDEILGNETRVKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNK SGAWYSYQGNKIGQGKAAAREWLKSHPEEMKMIEEQIKAAIKGKDHEEDAAEEVVTKETE ETYEDAQ >gi|301349838|gb|ADCQ01000012.1| GENE 3 1976 - 2452 356 158 aa, chain + ## HITS:1 COG:RSc0552 KEGG:ns NR:ns ## COG: RSc0552 COG2137 # Protein_GI_number: 17545271 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 14 149 13 145 159 78 35.0 4e-15 MFDPADRRKQILYKAVAALARRERSRLGLYKKLSETFNEEGDKELINSVLDELVNKKYLS DERYARIQVLTRSARYGDRKLFWNLQRDGVSREIAEEALKQNEESEYDRALVLWKRKFGV PPEDYKERAKQIRFLASRGFTFKTIEKVLNCEVPDEVF >gi|301349838|gb|ADCQ01000012.1| GENE 4 2513 - 3679 1249 388 aa, chain + ## HITS:1 COG:BS_sucC KEGG:ns NR:ns ## COG: BS_sucC COG0045 # Protein_GI_number: 16078672 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Bacillus subtilis # 1 384 1 384 385 399 52.0 1e-111 MKIHEYQARQILKNFDVPVPVAEVASSPEEARKIAEEIGGKIWAVKSQIHAGGRGKGGGV KLARSLDDVSNLSKLMIGSRLVTKQTGPAGAPVSKVLVQQGLDIVQEFYVGFLIDRKLQK PVLIASAEGGMEIEKVAAQFPEKIIKTVIDPVAGLSVPEALEVATRLDVPADIAGDCAEV LRKLWNTFVSMDCSLLEINPLIVTSDKKVYPLDVKMTFDDNALLRHPELEELHDPEQEDP TELRAHKAGLQYIQLNGNIACLVNGAGLAMATMDTIKLFGGEPDNFLDIGGGASPEKVTA AFEIMLAQPEVKVILVNIFGGIMKCDVIAEGIVEACRHVKLSVPLIVRMKGTHEKEGKEI LKNSGLPIISADSLGDAAQKAVEMAAEK >gi|301349838|gb|ADCQ01000012.1| GENE 5 3681 - 4577 950 298 aa, chain + ## HITS:1 COG:RSc0555 KEGG:ns NR:ns ## COG: RSc0555 COG0074 # Protein_GI_number: 17545274 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Ralstonia solanacearum # 1 293 1 293 293 422 74.0 1e-118 MSILVNKNSRVITQGMTGKTGQFHTRLCRDYGFGPECFVGGVNPKKAGQEWEGLPIFGTV KEARAKTGANVSVIYVPPAGAAAAIQEASDAGIELIVCITEGIPVMDMVKVRDHMKKTGS KSLLLGPNCPGIMTPGEINVGIMPAHIHRKGRIGVVSRSGTLTYEAVAQITALGLGQSTA IGIGGDPINGLKHIDVLKLFNDDPETDAVVMIGEIGGSDEETAAEWVKDHMKKPVVGFIA GVTAPTGKRMGHAGAIISGGTGTAEGKLAVMEACGIRTTRNPSEIGSLLQSVLSSKKE >gi|301349838|gb|ADCQ01000012.1| GENE 6 4584 - 5294 868 236 aa, chain + ## HITS:1 COG:PA1170 KEGG:ns NR:ns ## COG: PA1170 COG0861 # Protein_GI_number: 15596367 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Pseudomonas aeruginosa # 4 226 1 223 244 166 47.0 3e-41 MEALIAWFGEIHWVAVLQIILIDILLGGDNAVVIALACRSLDPHLRVKGIIYGAGGAILL RVILIAFAVSVMNIPFLKFCGGLLLLWIGVKLIAPADEGEHEIHASKRLWGAVKTIIVAD LIMSIDNVIAIAGAAEQAPGHHQMALVIFGLLVSVPFILGGSQIILKVIDRFPIIVYAGG ALLGWIAGTLMVDDPGILAHLPNLPALHTEGGIAGAIFVLIVAFVLKYFRSQKTKA >gi|301349838|gb|ADCQ01000012.1| GENE 7 5364 - 5858 387 164 aa, chain - ## HITS:1 COG:CAC2475 KEGG:ns NR:ns ## COG: CAC2475 COG3467 # Protein_GI_number: 15895740 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Clostridium acetobutylicum # 1 151 1 151 154 91 36.0 5e-19 MRKELTRTKQALSNESIQRIIDTTAYGVLSLNGDDGYLYTVPLSYVYTGGAVYFHGSPRG YKSECFQRTNKTSFSIVGQSQVVPTVRANNFQSVLIWGRLHIVTDIAEKLSALRALAEKY SRGIPDNEEEIQHSLNYVFMVKLVPDWITGKRAALEVREAAEKL >gi|301349838|gb|ADCQ01000012.1| GENE 8 6018 - 6240 132 74 aa, chain + ## HITS:1 COG:no KEGG:SYN_01317 NR:ns ## KEGG: SYN_01317 # Name: not_defined # Def: transposase and inactivated derivatives # Organism: S.aciditrophicus # Pathway: not_defined # 1 74 7 79 174 61 44.0 9e-09 MSPQFRVTLTKEEVEELQKISSTGSRSAKIVLFARALLLLDKGPHTTEHWTVNQTSKAVG LSERTLNHLKEKFV Prediction of potential genes in microbial genomes Time: Fri May 13 05:35:58 2011 Seq name: gi|301349837|gb|ADCQ01000013.1| Burkholderiales bacterium 1_1_47 cont1.13, whole genome shotgun sequence Length of sequence - 76772 bp Number of predicted genes - 67, with homology - 62 Number of transcription units - 38, operones - 16 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 217 - 251 0.2 1 1 Op 1 . - CDS 253 - 1680 664 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 2 1 Op 2 . - CDS 1736 - 3409 1411 ## DaAHT2_0065 formate-dependent nitrite reductase periplasmic cytochrome c552 subunit-like protein 3 2 Tu 1 . - CDS 3553 - 3870 382 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 3964 - 4023 3.8 + Prom 4054 - 4113 3.4 4 3 Tu 1 . + CDS 4146 - 4850 873 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 4851 - 4886 2.0 - Term 4892 - 4932 1.1 5 4 Tu 1 . - CDS 4948 - 6033 1222 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 6053 - 6112 4.2 + Prom 5998 - 6057 3.6 6 5 Op 1 . + CDS 6194 - 7261 968 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 7 5 Op 2 . + CDS 7262 - 7882 406 ## COG1335 Amidases related to nicotinamidase - Term 7833 - 7869 5.1 8 6 Op 1 23/0.000 - CDS 7879 - 8622 840 ## COG1346 Putative effector of murein hydrolase 9 6 Op 2 . - CDS 8615 - 8989 393 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 9137 - 9196 3.9 + Prom 9102 - 9161 4.6 10 7 Tu 1 . + CDS 9218 - 10333 1771 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 10355 - 10392 7.8 11 8 Tu 1 . + CDS 10476 - 10691 303 ## gi|302860077|gb|EFL83154.1| S4 domain protein + Term 10694 - 10725 0.1 - Term 10676 - 10718 5.1 12 9 Tu 1 . - CDS 10728 - 10988 218 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 11033 - 11092 6.2 + Prom 11062 - 11121 4.5 13 10 Op 1 . + CDS 11181 - 11726 647 ## COG4635 Flavodoxin + Term 11757 - 11798 7.3 14 10 Op 2 . + CDS 11807 - 13552 2193 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 13565 - 13618 13.1 + Prom 13830 - 13889 6.1 15 11 Op 1 . + CDS 13954 - 15219 1816 ## COG3069 C4-dicarboxylate transporter 16 11 Op 2 . + CDS 15235 - 16482 1537 ## COG2195 Di- and tripeptidases + Term 16523 - 16570 8.6 + Prom 16527 - 16586 2.4 17 12 Tu 1 . + CDS 16638 - 18425 1116 ## COG1164 Oligoendopeptidase F + Term 18439 - 18497 3.7 + Prom 18435 - 18494 5.4 18 13 Op 1 27/0.000 + CDS 18598 - 19791 1496 ## COG0845 Membrane-fusion protein 19 13 Op 2 9/0.000 + CDS 19806 - 22943 3674 ## COG0841 Cation/multidrug efflux pump 20 13 Op 3 . + CDS 22944 - 24443 481 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 21 13 Op 4 . + CDS 24436 - 25044 448 ## LHK_02132 putative transcriptional regulator (TetR/AcrR family) protein + Term 25072 - 25111 2.1 + Prom 25046 - 25105 4.0 22 14 Op 1 8/0.000 + CDS 25244 - 27013 878 ## COG0642 Signal transduction histidine kinase 23 14 Op 2 . + CDS 27010 - 27633 310 ## COG4566 Response regulator 24 15 Tu 1 . + CDS 27710 - 29119 1873 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 29146 - 29171 -0.5 - Term 29134 - 29159 -0.5 25 16 Op 1 . - CDS 29191 - 29436 152 ## gi|302860091|gb|EFL83168.1| hypothetical protein HMPREF0189_00245 26 16 Op 2 . - CDS 29394 - 29747 75 ## gi|302860092|gb|EFL83169.1| hypothetical protein HMPREF0189_00246 - Prom 29904 - 29963 4.1 + Prom 29863 - 29922 2.5 27 17 Tu 1 . + CDS 29952 - 31223 1584 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 31267 - 31311 10.1 - Term 31251 - 31302 5.8 28 18 Tu 1 . - CDS 31318 - 32385 1011 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 32529 - 32588 3.0 + Prom 32336 - 32395 2.0 29 19 Tu 1 . + CDS 32471 - 32671 78 ## 30 20 Op 1 5/0.000 - CDS 32638 - 33594 1112 ## COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase 31 20 Op 2 5/0.000 - CDS 33596 - 34297 564 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 34342 - 34401 2.7 32 20 Op 3 . - CDS 34462 - 35652 614 ## COG0477 Permeases of the major facilitator superfamily - Prom 35676 - 35735 3.0 - Term 35690 - 35721 2.4 33 21 Tu 1 . - CDS 35755 - 36321 452 ## gi|302860098|gb|EFL83175.1| conserved hypothetical protein - Prom 36347 - 36406 1.8 - Term 36390 - 36435 5.6 34 22 Op 1 4/0.000 - CDS 36475 - 37917 1591 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs 35 22 Op 2 4/0.000 - CDS 37910 - 38731 649 ## COG0388 Predicted amidohydrolase 36 22 Op 3 . - CDS 38737 - 42693 3007 ## COG3164 Predicted membrane protein - Prom 42760 - 42819 3.9 + Prom 42711 - 42770 5.2 37 23 Op 1 . + CDS 42800 - 45652 2628 ## COG1391 Glutamine synthetase adenylyltransferase 38 23 Op 2 . + CDS 45688 - 46671 846 ## COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold 39 23 Op 3 . + CDS 46718 - 47293 739 ## Krad_4383 protein of unknown function DUF165 40 23 Op 4 . + CDS 47300 - 48307 934 ## COG0276 Protoheme ferro-lyase (ferrochelatase) + Prom 48329 - 48388 4.2 41 24 Op 1 29/0.000 + CDS 48581 - 49126 520 ## COG0576 Molecular chaperone GrpE (heat shock protein) 42 24 Op 2 31/0.000 + CDS 49208 - 51112 2460 ## COG0443 Molecular chaperone 43 24 Op 3 . + CDS 51235 - 52395 1166 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 52420 - 52464 7.0 - Term 52351 - 52392 3.9 44 25 Tu 1 . - CDS 52494 - 52745 90 ## + Prom 52403 - 52462 4.5 45 26 Op 1 27/0.000 + CDS 52711 - 53826 911 ## COG0845 Membrane-fusion protein 46 26 Op 2 . + CDS 53847 - 56936 2681 ## COG0841 Cation/multidrug efflux pump + Term 56949 - 56986 3.5 47 27 Tu 1 . - CDS 57380 - 57997 64 ## COG0583 Transcriptional regulator - Prom 58119 - 58178 13.3 + Prom 58094 - 58153 11.6 48 28 Tu 1 . + CDS 58394 - 61822 2460 ## COG1404 Subtilisin-like serine proteases 49 29 Tu 1 . - CDS 61827 - 61913 76 ## 50 30 Op 1 . + CDS 61950 - 63284 1760 ## COG2704 Anaerobic C4-dicarboxylate transporter 51 30 Op 2 . + CDS 63338 - 63460 66 ## + Term 63530 - 63564 1.6 - Term 63644 - 63696 2.2 52 31 Tu 1 . - CDS 63725 - 64513 1181 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 64543 - 64602 6.5 53 32 Tu 1 . + CDS 64440 - 64658 152 ## 54 33 Tu 1 . - CDS 64696 - 65499 217 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Term 65510 - 65547 7.1 55 34 Op 1 . - CDS 65578 - 66600 1285 ## COG2855 Predicted membrane protein 56 34 Op 2 . - CDS 66604 - 68418 1413 ## COG0006 Xaa-Pro aminopeptidase 57 34 Op 3 . - CDS 68440 - 68796 388 ## gi|302860119|gb|EFL83196.1| conserved hypothetical protein 58 34 Op 4 . - CDS 68786 - 69889 1054 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 69958 - 70017 4.2 - Term 69966 - 70008 1.0 59 35 Tu 1 . - CDS 70055 - 71326 1165 ## COG0513 Superfamily II DNA and RNA helicases - Prom 71556 - 71615 1.8 + Prom 71240 - 71299 1.8 60 36 Tu 1 . + CDS 71463 - 71876 606 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Term 71901 - 71939 3.1 - Term 72032 - 72080 8.2 61 37 Tu 1 . - CDS 72093 - 72707 636 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 72729 - 72788 2.8 - Term 72786 - 72814 -1.0 62 38 Op 1 . - CDS 72839 - 73702 783 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 63 38 Op 2 7/0.000 - CDS 73712 - 74239 645 ## COG2059 Chromate transport protein ChrA 64 38 Op 3 . - CDS 74236 - 74838 510 ## COG2059 Chromate transport protein ChrA 65 38 Op 4 1/0.250 - CDS 74903 - 75499 664 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 66 38 Op 5 14/0.000 - CDS 75503 - 75970 465 ## COG1576 Uncharacterized conserved protein 67 38 Op 6 . - CDS 75980 - 76351 563 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 76374 - 76433 3.4 Predicted protein(s) >gi|301349837|gb|ADCQ01000013.1| GENE 1 253 - 1680 664 475 aa, chain - ## HITS:1 COG:YPO2845 KEGG:ns NR:ns ## COG: YPO2845 COG1167 # Protein_GI_number: 16123040 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Yersinia pestis # 25 466 27 470 501 265 36.0 1e-70 MAHKVQPSLSNISLNHDSGASSLQEQLYFKILDLIENKSLRPGDPIPSSRKLASEIEVSR STVVSVYNRLLEEGLLETKSGNGTFVSEISLGVFENRKESLPVNEKYLPSELPLSAQIAA TATGFKVQKPMPFAVIAPDLDSLPGKNWTTVVARTSKSPWLHNGYCEPGGFMPYKKAVCD YLRQYRGLRCEPEQVITTNGTQQALDLCASVLFEKEDKIAVEDPYFQTHINLLEFRGLKP IPIPVSQDGIDIDKLKKQKKIKGILVTPCHQYPLGYVSSAENNEKLLAWAKLEGIWIIED DYDSELRYGKKPLPALSSYKDGAPCIYLGSFTKVIYPGFNMAYMVVPKSLVPIFEGAKLL MDRHSSEVHQYILAEFIQNGFYYSHVRRLKKIYEKRRQAAVRAIGKYLSGYGHIEGANEG THLTFIFNQPQDDVRLSELLIRSYQIETRPLSACYRSAKALTGFILVPCNNNIFA >gi|301349837|gb|ADCQ01000013.1| GENE 2 1736 - 3409 1411 557 aa, chain - ## HITS:1 COG:no KEGG:DaAHT2_0065 NR:ns ## KEGG: DaAHT2_0065 # Name: not_defined # Def: formate-dependent nitrite reductase periplasmic cytochrome c552 subunit-like protein # Organism: D.alkaliphilus # Pathway: not_defined # 13 531 20 521 557 174 27.0 9e-42 MQNTIIKSIVSLGLSCLSLSVLAAAAPQQPVDKNQCFGCHATAIKTLSTRGAHKNVNCVS CHDISPEHVKAPSRDNRPTTHFEYAACGQCHTEQHKDIMDPKYHYEWALKNTPPAYAQFR DIAGDNSFRDVQFRLPRFHSSIVTDLANVRSDGRYQYKKYTDLSKPGAPMWEALTDTRPN EGDKILPSKTLSLTWRPHKGREIMGRSDCLKCKSSDNILDYAYLGAKNPKAPLAFDDPDH KVLKTVNNSFNCITCHDPHSAEPRIVFDHLIEAMSHPHYKDYNYQKNAGKTGYPKIEVIN MGVRGYPRKIAILEKANSNYMCGQCHEGHNRSETFYKDSDSQLAHPKNAIDRTGWSVGTF FAANPIERWNVVRRLGLYNGIDKATGVKTVSTDHYHMETVVGSKHGQAGVGCTDCHFAKK ANGTLEHQPSLPSLKYKNTCARSDCHGNPNGDNWSEGQAAYMVATIQQRYRIHKERLERY GSAARNLLIKAKNGDVKINQPEYQKLQDAYSLYLHTVGWYFSDYSKGVHDPSGFEKTSSE VIKNLRTATAAAQNTIK >gi|301349837|gb|ADCQ01000013.1| GENE 3 3553 - 3870 382 105 aa, chain - ## HITS:1 COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 103 51 153 155 97 52.0 4e-21 MSWIYLFIAGIFEIVWAVALKHADGFSNWFYSTVTIIGMVASVYFLAVAMRTIPLGTTYA IWTGIGCIGAFIAGILLFGEAFTVSRTVFASLIAIGIIGLKFSAS >gi|301349837|gb|ADCQ01000013.1| GENE 4 4146 - 4850 873 234 aa, chain + ## HITS:1 COG:PA1170 KEGG:ns NR:ns ## COG: PA1170 COG0861 # Protein_GI_number: 15596367 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Pseudomonas aeruginosa # 4 223 1 220 244 175 49.0 8e-44 MEALIAWFAEIHWVAVLQIILIDILLGGDNAVVIALACRNLDPSLRFKGVLYGAAGAILL RVILIAFAVTIMNIPFLKLVGALLLLWIGIKLIVPQDEGEHEIHASKRLWGAIKTIIVAD LVMSLDNVIAIAGAAEQAPAGHQMGLVIFGLLVSVPFILGGSQLFLKFIDRYPIIVYAGG ALLGWIAGTLIVGDPGLTPHIPNLAEMHTPAGIAGAVFVLIVAFAIKGLRKKAN >gi|301349837|gb|ADCQ01000013.1| GENE 5 4948 - 6033 1222 361 aa, chain - ## HITS:1 COG:RSc2723 KEGG:ns NR:ns ## COG: RSc2723 COG0482 # Protein_GI_number: 17547442 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Ralstonia solanacearum # 1 360 1 360 370 549 69.0 1e-156 METKTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSEYCSSRQDLIDATAVA DVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADK IATGHYARVRERDGLFELLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEVRRIAE EIGLPNAKKKDSTGICFIGERPFREFLHRYLANKPGPIKTPDGRIVGEHIGLSYYTLGQR KGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWISGTAPEAG RMLGLKTRYRMADQECKVIRTDDESVVVSSLDPLWAVTPGQSAVFYDEEVCLGGAIIGTS R >gi|301349837|gb|ADCQ01000013.1| GENE 6 6194 - 7261 968 355 aa, chain + ## HITS:1 COG:PA4202 KEGG:ns NR:ns ## COG: PA4202 COG2070 # Protein_GI_number: 15599397 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Pseudomonas aeruginosa # 11 345 2 342 351 102 28.0 2e-21 MIATQNAADKTQKFLDDFKVSKPVIGLPGLGWDTPEMAAAVSNAGGLGVLHIGFKTEEEI ERDVAKVRSLTDEPFAVLMFPQKESILDAEKLRLQDTALSPLREDLGCTAARPISAPLFD NQFRKIVELKVPAVGLRLGGLREPYMEELEANGISVFGIASNLRDAKVLVSSGVNAVVAA GWAEEGLLSHEEIGKDQAEIDSLVLWSECARALRVPVLGAGSVTTQNQVRVIKALGLAGF MLSDALLLAKESPIPDSWRTKVMYLADSASETSDTFMGRASRYLSNGFAQIFPEKGLPVL QFPYQYFALKDIFDKALEIGRIDLALLEVGQYVYLAESGTTADIINKFCGYWSED >gi|301349837|gb|ADCQ01000013.1| GENE 7 7262 - 7882 406 206 aa, chain + ## HITS:1 COG:RSc1760 KEGG:ns NR:ns ## COG: RSc1760 COG1335 # Protein_GI_number: 17546479 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Ralstonia solanacearum # 7 205 9 207 210 231 55.0 7e-61 MKDNQALIVVDVQKDFLETGALPVKEGSQVVPVINRIIPKFKNVVFTQDWHPQGHISFAS SHPGIAPYSTIDVSYGKQVLWPEHCVQNTSGAEFAEGLNTENGDCFVKKGAHSDIDSYSA FLEADRKTKTDLGVWLRSQGITEVFVCGLATDFCVSWTALDAADEGLRVSVIEDASRGID VNGSLEGARAAWKKRGIKRIDSSEIN >gi|301349837|gb|ADCQ01000013.1| GENE 8 7879 - 8622 840 247 aa, chain - ## HITS:1 COG:RSc2670 KEGG:ns NR:ns ## COG: RSc2670 COG1346 # Protein_GI_number: 17547389 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Ralstonia solanacearum # 9 238 5 234 240 186 51.0 5e-47 MNNIDFHGIEEIWSSLSTSSLLWLTVTLAAYLFAQKLYKWSNWNSLLNPVAVSIVTVVLL LMATHTPYQTYFSGAQFIHFLLGPTTVALAVPLYDLRIQLAKNWLPILLGLFAGAFTAIT STVLIAGLLGASPETIISLAPKSVTTPIAMSIAEKLGGLPALSASLVVLTGVLGSICAGP LFLLLKVDSSSAKGFALGLSAHGMGTSRAFQIDSTAGAYGSLAIGLTGLTTALLAPLLTP LLMKIFF >gi|301349837|gb|ADCQ01000013.1| GENE 9 8615 - 8989 393 124 aa, chain - ## HITS:1 COG:RSc2669 KEGG:ns NR:ns ## COG: RSc2669 COG1380 # Protein_GI_number: 17547388 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Ralstonia solanacearum # 1 120 1 121 125 71 39.0 3e-13 MIEGLVLLLVFQLLGNVAEMYFHLPVPGSVLGMFLLLVALIANDRLASWVRPISLVLISY LAVLFVPAGVGIMLHIDRLKNEALPIGVSLVVSTILTIAVTALVIKYSTIWLQKRKERKE ARHE >gi|301349837|gb|ADCQ01000013.1| GENE 10 9218 - 10333 1771 371 aa, chain + ## HITS:1 COG:PM0932 KEGG:ns NR:ns ## COG: PM0932 COG0624 # Protein_GI_number: 15602797 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Pasteurella multocida # 3 368 2 367 379 223 34.0 5e-58 MSVLDSYMKDLAELVNKDRGTANIAGVTEAAKIMKGHLESIGFKADLVDLGPNAGNGLFA TNKPNADHYDVLFNAHLDTVFPDGTAAARPLTVKGDRAYGPGCSDCKSGVLAIYYALKAA RPEDLERLSIAVALNPDEETGSKASSAWLKGIAAKSSRALVFEAARAGGQLVRSRKGSTN YIVTFHGKASHAGNAPYKGANANIAAMRFALAAAGLADVDKGTTVNPGVIEGGSAPNVIS EKCVVKLDTRYWNNEDDKYLDDGINKLAAAVWAPGVTQTIERVSHSNAMPLSDATKELVA QITEAAKLEGFDIDWVDAGGASDGNHMAEAGLPVIDGCGPAGGEFHCDREFLRLDTVEER IRMITRFLSLI >gi|301349837|gb|ADCQ01000013.1| GENE 11 10476 - 10691 303 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860077|gb|EFL83154.1| ## NR: gi|302860077|gb|EFL83154.1| S4 domain protein [Burkholderiales bacterium 1_1_47] # 1 71 18 88 88 119 100.0 7e-26 MKFELNGEFIRLGDLLKAAGLTGTGGEAKQAVQDGLVNVDRKVCTERGHKIRAGQKVQFK DQTIEVVEQAK >gi|301349837|gb|ADCQ01000013.1| GENE 12 10728 - 10988 218 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 70 1 70 72 88 52 9e-17 MAKEDLIETTATVTEVLPDARYRVKLDNGYELIAYTNGKMRKHHIRILAGDKVSLEISPY DMTKGRITFRHIEGRPPVAAAGGKRK >gi|301349837|gb|ADCQ01000013.1| GENE 13 11181 - 11726 647 181 aa, chain + ## HITS:1 COG:STM3987 KEGG:ns NR:ns ## COG: STM3987 COG4635 # Protein_GI_number: 16767257 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism # Function: Flavodoxin # Organism: Salmonella typhimurium LT2 # 5 181 4 178 181 125 37.0 6e-29 MKNILIVYYSRMGHTARMVRTIADELEALGNTVTVMPVSEALREGVDWSKHDFVLCGFPV VYGTYHPNVYEFVRNNCTELDRKPNAMFNVTVVARTPFKATVEGNRYMQKFLERSPWRPR DLKCFAGKIDYPHLNLFDKKCIQLIMKITNGPTDPSMCIDFTDWEDVKQYAKHISELARQ A >gi|301349837|gb|ADCQ01000013.1| GENE 14 11807 - 13552 2193 581 aa, chain + ## HITS:1 COG:ECs2514 KEGG:ns NR:ns ## COG: ECs2514 COG0318 # Protein_GI_number: 15831768 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Escherichia coli O157:H7 # 9 561 5 551 561 597 52.0 1e-170 MTDTQEYPWIKHYPEGVPATINPDIYESLPDFQEKICQEYGDAPVFTSLGKTMTYKEFDE KVTAFASYLQSLPGVEQGDRVAVMMPNLLQYPICLFGIMKAGLIVVNVNPLYTARELGGQ LKDSGAKVLVIIENFAKTFEKIQKDSPVEHVITTQVGDLLSAPKRLLVNFMLKKVKKMVP EFNLEHAVSFRDALAQGASRKFNPVKLDRYDIALLQYTGGTTGIAKGAMLTHRNVLANLQ QTGVWISGDFKKKTEVVMTALPLYHIFSLTALCSFLQWGARMVLIANPRDMKGLVKECEK QHFTVICGVNTLFNGLLNTPGFDKVDFKMLKLTVGGGTQVQKSVAERWKEVTGGHIIEAY GLTECSPGVAANPMNTPWNGSVGFPFPSTVVSIRGEGFKDLGFWTTPQEIPEHTGEICVK GPQVMRGYWDKPEETAAVLRDGWLRTGDIGNMDSNGRITITDRQKDMILVSGFNVYPNEI EGVLQSMPEILECGVVGVPNEKSGERVKAVIVKKDPSLTVEQVKAYCRQNLTGYKMPKEI VFVDSIPKTPVGKILRRELKDIVAKEEAPAKQEAEGQKSEN >gi|301349837|gb|ADCQ01000013.1| GENE 15 13954 - 15219 1816 421 aa, chain + ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 8 417 9 427 432 289 46.0 9e-78 MTWTFWAAIVVVIATVYALIKRYETRLVLLTSGFVMAFISLQPMIAFKQFDKSMTNGSLI IAICSALGFAAVISLTKCDVHLVSLLMRPLKKLGVFLLPSCMIVTSVIATAIPSMAGLSA AVGPTMIPIMIRSGFKPAIAAAAVGGCMMPAYLNPGVSHNPFISKLASMEIMQFIGAHAT TTVTMGLISIVVITITCFAFGDFKRGKAAVEEAVEVASNEIEHPNILFAIAPIVPVVLLV CASIWFPQLKMSVATAMLIGTFYALVVTRSNPEEVTKKFFAGMGNGYAKILGIIIAAGVF AAGLRAAGVIEVFVQYLTHSNEVAKIGGAFGPFFLAVLTGSGDAAAFAFNEAVTPHAPTF GMTIDGLGYLAMMAAGIGRQASPLAGGIILLSGIAGVSPVEVVKRTAPAAVVMVLTLYFL V >gi|301349837|gb|ADCQ01000013.1| GENE 16 15235 - 16482 1537 415 aa, chain + ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 18 408 16 412 412 249 38.0 6e-66 MKNIPALDPKVLGLVTEISKEPKVEAAIAFIKDQTEVAMLEQIELCEIEAPTFHEEKRAA SVAERMRQYGLTDVHIDEIGNVIGIRKGSGNGPVLAIGAHMDSVFPAGTDVKVKKEGNIY RAPGIGDNCSGLRALLQVLRALEKEDIRTVGDIWFVGTVGEEGNGDIRGSKHLCANNKLD GFVAIDSTDVGRVLYGAVGSHRWRLAVDGTGGHSFADFGKTPSAIHAVCRAGNIIADIKV PEDPKTTFTIGTIKGGTTVNTISAHCEVDVDIRSVSNDELLRVESEVLGAFEKAIKEENA RWGVADENGLKLTKTMIGNRPGGLRPHSCPVLQAARSAQKTLGIELTNYAMSSTDANAPM SHNIPATCLCSGGKGIGAHTLKEHFIMEKTELGPQLVLLTALALAGTETTKPLLG >gi|301349837|gb|ADCQ01000013.1| GENE 17 16638 - 18425 1116 595 aa, chain + ## HITS:1 COG:lin1528 KEGG:ns NR:ns ## COG: lin1528 COG1164 # Protein_GI_number: 16800596 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Listeria innocua # 4 586 9 600 602 165 23.0 2e-40 MPAWDFRSSYGGLTSQAYRKARQRLEADIHILSGLVPNAKDAVSISIALEHLAEVFSLTD SLIGYCRCLSAIDTREQEAAKERVRLWEIHSRYYELITGLFHRLTELKKSDPIWKELDFS KWEWLFERVSSRWSFSLSPRALQLLYELKASNFVPCSDLYHSVNSHLVATVRTMDGLTKH QSHSQCIAVLKTSEDPKLRQSTFAALNEYYSQNAYLYASIFNMLTGFRLKGFEFAQMDFM APAYWQNAVSSEAVDALMTAVRANRHMLRKSVISRALFTGRSAMDVWDLNAPAPLRREIH IPYEEALDKIKEVGKVLDERIPETFELFVEKGWVEVRQLPGKQNGAFFQGILSLNEPRIF STYLGSFASMSQQAIMYGHAWHFWLQRELPAQERKIPRALMEVAGHFFALLLFEEIQEKA ASMEEKLEALWQELTFISNYVINMGVRFDFERSFFEERRKGVLSVTKISNLLSEAWQAWY GESTAGIDPYLWINRGQFYKIDDYFYNYPYIFGTVCAYGLSEIRHRMPEVFPKIYSDFLF NSGRMSVDDLFKKFFKIDITQPEFWESGLKAMERKISVFEAEARKYSEKAVMENT >gi|301349837|gb|ADCQ01000013.1| GENE 18 18598 - 19791 1496 397 aa, chain + ## HITS:1 COG:YPO3132 KEGG:ns NR:ns ## COG: YPO3132 COG0845 # Protein_GI_number: 16123294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Yersinia pestis # 43 395 39 395 395 307 51.0 3e-83 MLLNDLKKAALCVAAGFAVTMFGGCDSQKSTGALAGAGAQRAPQVSVTEIQPTELDMTTT LQGRTASYLVADVRPQVAGILQKRLFKEGSEVKEGQALYQIDPAVYEAAVASAKAELQRA QAVLYQTRLTANRYAQLVKTNAISKQNNDDAQAAYKQAQAAVAAAEAGLKNAQINLDYTT VRSPISGRIGRSLVTPGALLSAHQAQNMAVVQTLDPIYVDVTQSSKEILSLKKDIASGKL KTKGGAIPVTLIMEDGTKYPQTGELTLSEVSVDPGTGTITLRAEFPNPDNILLPGMFVRT ELPQGTMEKALLVPQRAVMREANGTPYVYVVEDGKIAIRRLVTHRTQGQNWIVEEGLKPG EKVVIEGLQRIRPGVPVQIVPTMAEQEQAKAAKASKQ >gi|301349837|gb|ADCQ01000013.1| GENE 19 19806 - 22943 3674 1045 aa, chain + ## HITS:1 COG:PA0426 KEGG:ns NR:ns ## COG: PA0426 COG0841 # Protein_GI_number: 15595623 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Pseudomonas aeruginosa # 1 1036 1 1039 1046 1224 61.0 0 MAKFFINRPIFAWVIAIVIMLAGTLSILNLPVSMYPQIAPPQVSISATYPGASAKTIEDT VVQVIEQKMTGLDGYLYMSSTSESSGRINITLTFAAGTDPDMAQVQVQNRLSQAQSSLPE VVQRLGVTVIKTTASFLKVIGLTSTDGSISSAELGDYLVSSIQEPLSRVDGVGEVEVFGS AFAMRIWLDPEKLHEFSLTPADIKTAISTQNVQISSGQVGGLPAAKGTALNAVITSSSLL ETPEQFGAIFLKTQENGSQVFLRDVARIEKGPKMYEATAFFNGKPTAGLAIKLASGANAL LTSDLVDKKMEELSHFFPEKYEYVIPFDTTPFVRISIEGVIHTLLEAIVLVVLVMYLFLQ NFRATLIPTIAVPVVVLGTFGILGAMGYSINMLTMFAMVLAIGLLVDDAIVVVENVERVM DQERLSPHDATEKSMSQITGALVGIAMVLSAVFVPMAFFGGSTGVIYRQFSVTIVAAMGL SVLVALTLTPALCATILKPIKHDKAEKGFFGWFNRWFNKGAEGATSAVGYMTARWKRFIV IYGVIIGGVVFGFLKVPTAFMPDEDQGSLMVQIQLPEGSTREQILPVVKRMQDYMLNEEK DSVQSVMTVVGFSLAGMGQNSAMAFVKLKDWSERPNPEQKAQAVAARANRTLMSWKDSMV FGFALPPVPELGMADGFDMYLQDLSGQGHDALMAARNQVLGAARSNPQLYNVRPNGKEDA PQLQLHIDFAKAASLGVSVASINDTLSTAWGSSYVNDFYDRGRIKQVYVQGDEKFRQRPE DLDRWYVRNDKGEMVPFSAFCSTEWKFGSSRLERFNGLGAVNIQGAPAAGFTTGQAMLAM EEIAKALPYGFGIAWNGISFQEQQAGSQTGALYTLSILIVFLCLAALYESWSIPIAVILV VPLGVIGALGMTGAFGMNNDVYFQVGLLTTIGLVSKNAILIVEFAKELHEKGESIVHAAA HAVRMRIRPIMMTSLAFGLGVLPLAKATGAGSGAQNAIGIGVLGGMLTGTFLCIFFVPLF YVLIVKLFGDKIKKKKPQEALQENK >gi|301349837|gb|ADCQ01000013.1| GENE 20 22944 - 24443 481 499 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 9 469 7 459 460 189 29 3e-47 MKALKLTVIACSLAVCAGCTMAPKYERPAAPVAATFPTGEAYKDVMTTASPLPDWKVFIT NPKAKKVVEMALANNRDLRVAILNIEKARAAYGIQRSALMPSVAAGLQENTGKTPSMMSA TGSSYVSHTYQANLASTAWELDLFGRVRSLSEAALQQFFSAEENRAAAQNALIAQVATSW INLGAQKEFLRLQKITLQSQEESFKLMSDSYRLGASSLLELEQARTTVATARAAVAQYER SLAQAQNALNLVVGSQVPADLEPNNLEEATNYGAIAPAGLSSDILLNRPDIKAAEHDLMS ANANIGAARANFFPRISLTAGIGSSSRHLSDLFDAGTGLWTFAPSVSLPIFTGGANLSTL RQAEAQQKIMVATYEKTVQNAFAEVSDALATVGTVNRQCAALKDLVNATETAYRLSQSRY KNGLDGFLTVLESQRQMVAAQTNYISAESNRLSSGVMLYKVLGGGSVIEPETRAAAQTEA PAAAEQAQAVHVSSGGGNA >gi|301349837|gb|ADCQ01000013.1| GENE 21 24436 - 25044 448 202 aa, chain + ## HITS:1 COG:no KEGG:LHK_02132 NR:ns ## KEGG: LHK_02132 # Name: not_defined # Def: putative transcriptional regulator (TetR/AcrR family) protein # Organism: L.hongkongensis # Pathway: not_defined # 20 189 19 203 213 74 29.0 2e-12 MLKTRETRVEERKEEKRSEKRDRILRAAEAIFLDKGFHAASMNEIAEAANVSTPHLYNFY ASKAALALAVQLKMGQETFDALKTAMSAGEKNPSCQSIFDSRRSSLMLTILTECTRNPEI KEKIKENGARLRKMISEAGGISPDDQEGQYRILCVMAMYLGMSISNIFTPVENRELMTKI LAQAETCILPFCGDKGSKATVS >gi|301349837|gb|ADCQ01000013.1| GENE 22 25244 - 27013 878 589 aa, chain + ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 69 582 66 564 571 128 25.0 3e-29 MNKILRLIAAVIGFLLLNVQAEEPKEYTFAINSAVTPLLHAAFVNQTIKTVERAVEPAKL KVMYVELPELERLIEDHQADFFISTAATIRRYQDLGARDVLTASSPFSKNPNRSEGSLFI VKADRSDINSVSDLKDKRAAAGRPTAFGMYLAAMGEIAADGYDPKTFFRSTQFYGLNRDQ IIKDVLNGKADVGILRACYLEDAVNRKVVTTDQLKFINLKSDPDHICLHSTRLYPNWSFG SNPSVPPAVLSAVAAGLIAQKPVGIGLYWSVASDYTAVDNLLKSLRLGSYQRFSKEWFWQ RIVEYRFWILSALAAFVLLLIHSLIVSRTVDIRTRELKESLKRENRSFNEAQKAHRRLMK MQRAAVVGQISSLIAHELNQPLAGIKLYARTLQRAKDSGTLTEDKLGTALTEIRTDADLA AAIVERVRSYAKGTRSERVSSEVSELVNKAVREFKRQSGERVEVWVPQEQPVYIIVNPLE FELVIINLLRNAAQALQELGVLNPKVALTIKREDNKALIAIEDNGHIEKEKIEKLSEPTN STKADGLGLGLQIVRSIIENHGGKIFFSQAASGGLRVEIRLPAEETTEQ >gi|301349837|gb|ADCQ01000013.1| GENE 23 27010 - 27633 310 207 aa, chain + ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 5 197 12 205 210 149 41.0 2e-36 MTISNPIIRIVDDEAVVRKALKFLLESEGWTVEAYEKGSEFLVEDRPSLIGCLILDVAMP EMNGLELYHRLRERKYEVPVIFLTGHGDVDMAVQAMKDGAIDFIQKPINEERLLSAVAKA VRYDETHRGWTISEEEEKKRFQTLTSREKQILSLIAKGLINKEVSERLGLSPRTIEVHRQ KGLHKLGVQTVSELVRLLSHIEENALF >gi|301349837|gb|ADCQ01000013.1| GENE 24 27710 - 29119 1873 469 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 20 466 39 479 484 348 47.0 1e-95 MKKLCIALVSALALGIVNAEETDLVVVGSGGAGLSAAIMAAQQGKKVIVLEKMPIIGGNT LRSEGGMNAAGTLQQLEHGIMNDSAMRMSMDAQKGGHYLNNPELTLTLAENAKDAEAWLL SLGAPFCHRMGRGGGQTAARGHGPCDGSAVGQSVMKVLYGTAKKIPTIEIRPLNQVTELL TKDGKISGVKVETKGKDKKDYTIDAKAVVLATGGFGANAKLISSLRPEYKGFATTNQPGA LGEGLDLAKGVGATFVDLREIQAHPTVVPVKGILISESMRARGGYLVNNEGNRFVNELQP RDVVAAAVLAQPTGKAWLLIDDKLVKSNKLAAGYVSQGLMVSGKNVDELAKAMGVPAKNL KATMDQYQKAFETKKDEAFGRPEMVVANNVWPMYAVQITPAIHHTMGGVRINKNAEVIGV TAKPIPGLYAAGEVTGGVHGGNRIGGNAVADIITFGRIAGANAANYMTK >gi|301349837|gb|ADCQ01000013.1| GENE 25 29191 - 29436 152 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860091|gb|EFL83168.1| ## NR: gi|302860091|gb|EFL83168.1| hypothetical protein HMPREF0189_00245 [Burkholderiales bacterium 1_1_47] # 1 81 1 81 81 160 100.0 2e-38 MHVSSTPFFYHSKMKNFIYGYPEQGFRLCPVKLITLDADPHRDDTELILSSQALAERSWT EDDLIRTLLGLDSRDEIQISL >gi|301349837|gb|ADCQ01000013.1| GENE 26 29394 - 29747 75 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860092|gb|EFL83169.1| ## NR: gi|302860092|gb|EFL83169.1| hypothetical protein HMPREF0189_00246 [Burkholderiales bacterium 1_1_47] # 14 117 1 104 104 191 99.0 2e-47 MNYTYAFSIIGCRVYITDDEYAKKRFKYLAQRCPAVFLRFEHSAYENLVENFLKETESSL KKWQIGSFKIAYPESLALFLFDWVEFLSHDFSSPNFLIFNDPRRCTFLRLRSFTIAR >gi|301349837|gb|ADCQ01000013.1| GENE 27 29952 - 31223 1584 423 aa, chain + ## HITS:1 COG:HI0584 KEGG:ns NR:ns ## COG: HI0584 COG1473 # Protein_GI_number: 16272528 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Haemophilus influenzae # 5 416 6 418 423 352 42.0 8e-97 MLTENELIKFRRELHSYPETGWCEFVTTHKIVEKLRSFGLDPIYGRQVINPEFVAGRNPA KVEEAKKAALDKGVPPEFIESMQDYTGVAAIFETGRPGPVLAIRFDMDCVDVDEAHEAGH RPFDEGWASTNPGHMHSCGHDGHTTMGIAVCNWIQENLDQFCGTIKVVFQPAEEGVRGAR PMTETGIFDDVDFFFGNHLGFNLPTGTISPEPGVFLASTKLDATFTGLAAHSGADPQKGK NALLAGAAAALAIHGITRPIGEVTALNVGTLVAGQGRNVVAPNAFMQLEVRGETEELNAY MRDQAIRKIKASADMYDCQVDIVKAGEATEFKPDQEAIELAYIAARNVTTEELARPLGLK LGSEDCTIMLRRVQQHGGKGTFVVFGCRTSAGHHQRLFDFDEEVIGIALRFYQNLIPMIV GIK >gi|301349837|gb|ADCQ01000013.1| GENE 28 31318 - 32385 1011 355 aa, chain - ## HITS:1 COG:RSc2660 KEGG:ns NR:ns ## COG: RSc2660 COG0722 # Protein_GI_number: 17547379 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Ralstonia solanacearum # 1 351 1 352 359 499 68.0 1e-141 MPYTTDDLRIKEIRELTPPSYLIREFPCGQLASSTVHIARHSAHDIIHGKDDRLLVIVGP CSIHDPVAAEEYAEKLSELRRHFADDLEIIMRVYFEKPRTTIGWKGLINDPDLDCSFHIN HGLRLARELLLTINELGVPAGTEYLDMITPQYIADLISWGAIGARTTESQVHRELASGLS CPVGFKNGTDGNVKIAIDAIKAAANEHVFLSVTKGGHSAIVVTGGNEDCHVILRGGKAPN YDVESVAKVCEALKAAGLPPSVMIDASHSNSHKKHKEQIDVVDSICKQIGDGSHNIMGVM IESNLVEGNQPLIKGKEKELKYGQSITDACIGWDDTVKVITSLAHAVRDRRERNR >gi|301349837|gb|ADCQ01000013.1| GENE 29 32471 - 32671 78 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MILDASRHSPTFRRGRKVKAVKVKLRSEHLLILASKKVLRNNLPYFSLSNEISFRNYLLM KRKIVE >gi|301349837|gb|ADCQ01000013.1| GENE 30 32638 - 33594 1112 318 aa, chain - ## HITS:1 COG:PA2536 KEGG:ns NR:ns ## COG: PA2536 COG4589 # Protein_GI_number: 15597732 # Func_class: R General function prediction only # Function: Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase # Organism: Pseudomonas aeruginosa # 12 309 9 303 311 202 40.0 8e-52 MRLGFSTQEAYFTILGVLIVLSAIGTIIGNWLVSRAQGNETRLNNLRVVNSRVRASWPLL IVFAIAFCLGEAALLIFFAFASFFALREFIALTPTRRHDHVILIIAFYIAIPVQYILLGY EEIGLFSLFIPVYLFLTLPVVMALAKDTDRFLDRVAKVQWGIMLAIFCVSHAPAIATLNL TRFNSSGLLLMLYFLLVLYFADLFQIMASAIWGGKPTWSNQYKTYKGIIIGSIGALIMGS ALFWMTPFRAWQAPLMSLLIIVSGTLGALVMSSVKRSLGAVRLDTSMMLTRGALDRMEML FFSAPVFYHSTIFLFMSK >gi|301349837|gb|ADCQ01000013.1| GENE 31 33596 - 34297 564 233 aa, chain - ## HITS:1 COG:SMc02158 KEGG:ns NR:ns ## COG: SMc02158 COG0204 # Protein_GI_number: 15964241 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Sinorhizobium meliloti # 40 220 6 188 203 198 56.0 7e-51 MPLSAKSAINMHLGIGGIITKLGIEKRRNVKHAFKFMTPMVWLTRLLVGAYPQWIGCKPE KIQRIYFANHSSHLDTIVIWSALPRSLRPLTRPVAARDYWQSGIRRRIAVDELNVVLVDR RRTENSDPLDPMRQALREGSSLIIFPEGTRSPQPLPGPFKSGIWRLMREFPEVELIPVYL ENLHRSMPKGALLPVPTMCSVRFGAPLPHSIDDSKEEFLERARTAVISLAREL >gi|301349837|gb|ADCQ01000013.1| GENE 32 34462 - 35652 614 396 aa, chain - ## HITS:1 COG:PA3532 KEGG:ns NR:ns ## COG: PA3532 COG0477 # Protein_GI_number: 15598728 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 7 360 8 355 383 141 31.0 2e-33 MFSEAVKNKLSCAAFFFLPGLSYSLVTSRMPAIKESAQIDDLQLGIALFCLGIAGCIGLF FSSRLVRLLKDRPTIAAGASLSTIGLVIAGYANSFASLVSGFAVIGFGIGLTDALMNAQG MFYERRYKTRSMNLFHAFFSLGGIVGSLTASFCAYLDLSPLFSFLVLVVPWTVVCLFGCR YLQEEDQTKKASTASKSSVAKRSSYPLVLICFGLLSWLAYDIEGSVAEWGSVYMVSSKEA DQAVAALVYGLFSGTIFVVRLFGDRLRESVGDFRLLPICSLIAFFGMSIVLLSASPASAL CGYIIMGLGLAPVVPTIFSLAGKCKGISASEASSFIAIVAYGGLLVVPPTLGWIASHSSL GTALCLVLVFCALAFVISLILPRLKNQLNLSGSLEP >gi|301349837|gb|ADCQ01000013.1| GENE 33 35755 - 36321 452 188 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860098|gb|EFL83175.1| ## NR: gi|302860098|gb|EFL83175.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 188 24 211 211 356 100.0 3e-97 MNKLLVGLCASICLLSLATDAQAVRLGGRTTIRPHRSYTPSPRTYRPTPANPAIRGFNAR QNAASTGSNIPVPLFIPPIIAGHNTTQITDDMYLIKTGMRKQGDKLQFWTLQNHSYTPDS KSAKVQFSMDCLAKIYSPIALATYPELDGKGKQIKSTTFDPKFRPIREKSAMDRLHSLLC PKPAPQQP >gi|301349837|gb|ADCQ01000013.1| GENE 34 36475 - 37917 1591 480 aa, chain - ## HITS:1 COG:RSc2659 KEGG:ns NR:ns ## COG: RSc2659 COG0312 # Protein_GI_number: 17547378 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Ralstonia solanacearum # 4 479 10 486 486 498 54.0 1e-140 MNNNTSAAIETLLYRNGLSEKDIQDAFALFSGYNIDYADFYFQRSVSEGYVLEESIVKTG HYNTDIGVGVRAVCGEKSALAYSEEISRDSLFEAVRTVRAIAQATNNQITVNVTPKDGPK VLYRAVDPIEAADTDAKIKLLQSLDKHARSRSSFVTQVTTSVGASHDTILIAKMDGTLIG DVRPLVRVNLGVIAEKDGKKEQGQAGGGGRFSLDRYNEEIIEQYAREAVDGAVRNLDARP APAGSLPVVLGNGWPGVLIHEAVGHGLEADFIRKGTSVFTDKIGQRVASPLVTVVDDGTI AGRRGSLTIDDEGNETHCTTLIDEGILRGFMHDETSARLMKQKTTGNGRRESFAYLPMPR MTNTYLLQGESDPQEIISSVDYGIYASNFGGGQVDITNGNFVFSMSEAWLIEKGKLTDPI KGATLTGNGADALTKIVMVGNDLELDRGCGTCGKNGQQVPTGVGMPTLRIDGLTVGGTAN >gi|301349837|gb|ADCQ01000013.1| GENE 35 37910 - 38731 649 273 aa, chain - ## HITS:1 COG:RSc2658 KEGG:ns NR:ns ## COG: RSc2658 COG0388 # Protein_GI_number: 17547377 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Ralstonia solanacearum # 2 270 23 288 289 229 48.0 3e-60 MLRIATCQMTSGPDLGANLQIAESLIRKAAREGANLALLPEMFTIMSNDPKDVLHAAERY QDGPVQKIMAGLAKSLGIWVAAGTIPLQSDDEHRVTNTMLVYDAFGQEAARYDKIHLFSY EGQQERYDESELYVGGHKTVSFNYPLENGLDIHIGLAVCYDLRFPQLFRRQTGVDCFLLP AAFTTNTGKAHWEVLLRARAIENLSYVVAAAQAGRSSCGRAFWGHSCAVDPWGTVVGSLN GHETGVCFTDVDPAFLRQVRALLPALNNRVKYE >gi|301349837|gb|ADCQ01000013.1| GENE 36 38737 - 42693 3007 1318 aa, chain - ## HITS:1 COG:RSc2657 KEGG:ns NR:ns ## COG: RSc2657 COG3164 # Protein_GI_number: 17547376 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 44 1315 82 1416 1426 399 26.0 1e-110 MTDNSEQQTSTTPTKPKKGFFGHAWRTVLWFLVILYFALGAAWLGARYCLAPYLNDHKSK IENKISQVLEIPVQFGSLDTDWQGLSPEITLKNIELGEPGKDPITAESLTAKLSLSSLTN LTPIFESVTLNNPKVEVRRLAPMSFSVLGRKVNLKKLMSGETETQALTTKLPSDVMVLLK QKSVEIKDGTILVHDQKSAKTLEVTNVNVGYNGSSRDKQLAFTLTLPPEIASPITVRALF KTPALNPSKLADWDAELYAQTDFINFGELAKWLPDFSVKYKGTGSGSLWANFVKWSPSSA SFIGALSHVDLQLPELAPLRLKFVKGKISGNMSGEAYALSTDNFSFELESGETLPPLDMS LKLDRSDDNFTGGSFKANALDFQGLTAVLPSLPLPKSFKDFVAERKLSGSLVNVDLDWQG LPSEPKHYNGKLSLRNFSSFGASGKDNTQWLPGFINLSADITLKDGVGTTVLTTKDASVA LPGLFPAAAFHFDSIGGTVVWNTVNGISLEFKDVLIENADAAVKVNGSYTNADNTPLGTA DLKADVLRGNVPAVWKYMPLVVGNDTITWLRYGLLEGKATGGQAVLKGPLHEFPFHESKE HHFLVSVNAEDVLLDVYPNILDNPKASPKRGTIWPLFEKVGGVVKFEGDGMAITADRGTY KGVQLTHAQVDIPAFSADTVWLDVDAAASGALPGFLSYVKTSPVDGYTGGLFKKAEGTGN GDLTLKLKIPLDGPGEVAVSGAFTLKDNAVKFNDFSIPDLTHAIGVVNFNDKGASSTGIT ADCFGNAVKATLDTDDKGNIKVSASGTIAAKALPQVIPVPMLAKAADKYLSGKTPFTVNV TVGPKVTVNVKSSLSGLESKLPPPMEKPASLSAPLDLNIVTDNKATDLRIMIEGFLSSEF ILQNNDIKRAAIGNRSLPTLPSHGYAISLKAPLVPAKAWQAVFDHLKVDAKPSGTVVLPD IAFLKANIDELLIDNFNQTNFSLLGRPVGNSLLIAINSNQMNANLEWKKAQNGKEPELIA HISKLFIPSSARDAAEKSKPVQIQGGWPAINAVIDDLTYGNMRLGKLELVARNTPSTKGQ LWKITKLNLSNSAAQLRSSGSWLKGFDGGNETNLLINTNINNLGALLNRLDMQNLVKSGN GSINGNLSWVGTPLGFNTESFDGELNIDLKRGEILKIQPGPAAKLLSLLTLQSLTRYLTL DFRDFYSSGFNFSTIRGNAVLEDGLMNIKDLTMIGGSATVVINGNVNTQKETENLHLLVL PDINAAGASVALAVANPIVGIGSFLAQLIFKDPLSKLFSFEYQVTGTWSDPVVSKIKR >gi|301349837|gb|ADCQ01000013.1| GENE 37 42800 - 45652 2628 950 aa, chain + ## HITS:1 COG:RSc2656 KEGG:ns NR:ns ## COG: RSc2656 COG1391 # Protein_GI_number: 17547375 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Ralstonia solanacearum # 74 943 83 946 955 702 44.0 0 MSAALQSSDLFPKVPRVSLSEVSEVSAYFKNTLRAMFGEDEDKVRSYVQEITQMSWTPEK MRERLAGIEDGEQLKSAMRRLRRDVMMSLVARDISGLANLEEVVTSMSDLAEITIDRTVS VYAKELAKRFGVPRSETGVPQDLIVIGMGKLGGRELNVSSDIDLIFFYDCDGECGPTAEY PNVRKIISNQEFYERLAKKVIPALSEITWEGFVFRVDMRLRPNGDSGPIVGSSDMLEEYL MTQGRDWERFAWLKGRVVNGPVFASEEDFNIQKKNINDIVRPFVYRKYLDFGAISSLTDL HAKIRLSTQKRALESLKEGQNIKLGRGGIREIEFIAQTFQVIRGGRNPFLRERSTLKALQ ALASENILAKDKAEMLSKIYVFLRNMEHALQYENDQQTQLFAADPEHRTRIAKMLGFTVE DLQKQLELSTEYVAARFDEIFQTKEEVSEEDWPLGWENGAPGALPGLAKVLERNGFKETE ELGQLILNLMSLRALKLINAGARQRMITLVKNTVEGKNKPEHLKLISREELLRRYIKFYE VIAGRPTYVSLLLQYPLAAKRLGDVLGSGKWAAEYLNRHPLLLDELWDERLSQIDDYTPV DFSFYIERTRARLADIPEDDQETRMNLIREVHHARLFRLFLADMAGRLTVERLADQLSAL ADATLEIVMEEVWKTVPGRHIERPKFAIVAYGKLGGKELAYASDLDLVFLFEDDAQDAEK IYMRFARRLINWLTATTGSGVLFDVDMRLRPNGESGMLVSSVDSFEKYQKNEDGTGAWLW EHQALTRARYAAGDRDIGDKFEKIRIEILRRERNAGETKAEVLKMRQRMHDGHPNKTELF DVKHDEGGMVDVEFIVQYLVLQYSSKFPQLVNNFGNIKMLEMVSDAGLIPKDLAFEVSAI YRKYRRIQHEFRLNSPSVPVRVPKEEFAEEAQKVRALWSLVFGPSEGQGA >gi|301349837|gb|ADCQ01000013.1| GENE 38 45688 - 46671 846 327 aa, chain + ## HITS:1 COG:RSc0563 KEGG:ns NR:ns ## COG: RSc0563 COG0429 # Protein_GI_number: 17545282 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta-hydrolase fold # Organism: Ralstonia solanacearum # 10 322 28 349 371 246 42.0 4e-65 MPMSLAASEYRAPWWLPGGHLQTIVPAELFPKAKVIYRREIWNTPDDDIIAVDWSTPEPI DPKAPIMVHIHGLEGSSNSHYARALMARCGQGGVRGVVIHYRGCGGVTNKKLRAYNAADA AELDWEFARLRELYPEAPIYAMGVSLGANNLLFWAGTRGEDAAKLVSGIVAVCAPLDLVG SSHVIRKGFSRIYDLNFISTMKKKALAKAKRFPGVLDVEKIKKIRWLWQFDDLFTAPIFG YKDYMDYWTKCSSKPHLGGIRLPTLVLNAKNDPIVGNEVLPMIQEVSKFVTLEYPAEGGH CGFPRKPNEGSLGFLPTRTFDFCFRGR >gi|301349837|gb|ADCQ01000013.1| GENE 39 46718 - 47293 739 191 aa, chain + ## HITS:1 COG:no KEGG:Krad_4383 NR:ns ## KEGG: Krad_4383 # Name: not_defined # Def: protein of unknown function DUF165 # Organism: K.radiotolerans # Pathway: not_defined # 11 166 15 160 194 94 44.0 2e-18 MPLRSTKDYSVGIIYFILFILTIPAMNWVVMNVGTVCTADGPCLIPVWPGIMAPSGVLMA GVALVLRDGLQAKLGVRWSLYAIIIGAALSALFSEPSLVLASVMAFFFSELADLVVYTPM RKKWPAWAIMASGLVGSMVDSAIFLSLAFGSIEFIFGQVLGKFWMSLAVALLIGYLHSRR AKAVQDEILSR >gi|301349837|gb|ADCQ01000013.1| GENE 40 47300 - 48307 934 335 aa, chain + ## HITS:1 COG:VC0987 KEGG:ns NR:ns ## COG: VC0987 COG0276 # Protein_GI_number: 15641002 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Vibrio cholerae # 7 327 10 321 324 320 48.0 3e-87 MTEKSPKTAVLLINLGSPDEPTASALKPYLREFLSDRRVVDLNPIFWQTLLNLVILPRRS PKSAARYVQVWMKEGAPLKVYTDRIADKLRQRFQQKAVDADVFVGMRYGNPSQVEVFKTI HNEHGFDRVLVLPLYPQYSSSTTASVFDAVSKAMQQMKSHPKVRFIRDYHTHLLYIKALA DQIRDQWAKVGPLGKKGRLMLSFHGMPVRYCEEGDPYPKQVRETTDLLIQELGVDPSKVV LSYQSRFGKEEWLKPYSDETARHLAREGVERLDVICPGFHTDCLETIEEIGLELKETWFK AGGKVFHYIPCLNDSEASVFLVEKIVEEELLHWPE >gi|301349837|gb|ADCQ01000013.1| GENE 41 48581 - 49126 520 181 aa, chain + ## HITS:1 COG:RSc2639 KEGG:ns NR:ns ## COG: RSc2639 COG0576 # Protein_GI_number: 17547358 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Ralstonia solanacearum # 20 180 51 211 214 117 49.0 1e-26 MQDNELKNGQTVPPQDEAAQQAPADAPELPDLDLSAELAKAQAKAAENYDLYVRAVAEAD NTRRRASEDVAKARKFGIEKFAESMLPVVDSMEKALEASANEKGPLKEGLEITYRQLLSA LEHNGMKCENPVGLKFDPNTMQAITMVKDPAVQPGCVATVFQRGWKIADRVLRPAMVAVA Q >gi|301349837|gb|ADCQ01000013.1| GENE 42 49208 - 51112 2460 634 aa, chain + ## HITS:1 COG:RSc2635 KEGG:ns NR:ns ## COG: RSc2635 COG0443 # Protein_GI_number: 17547354 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Ralstonia solanacearum # 1 634 37 684 688 840 73.0 0 MAKIIGIDLGTTNSAVAVVEGDKVRVIENSEGARTTPSVVAYLEKEVLVGAPAKRQAVTN PANTLFAIKRLIGRRYDDKEVQKDIKLMPYKIIKAANGDAWVQVLGDKDLAPQQVSAEIL RKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGKIAGLDVRRIINEPTAAALAFG LDKGGKGDRKIAVYDLGGGTFDISIIDLADVDGEKQFEVLSTNGDTFLGGEDFDQRIVDY VIKEFKKDTGIDLSQDVLALQRLKDAAEKAKIELSSRQETEINLPYITADATGPKHLNIT LTRSKLESLCEDLIERTIEPCRKALKDANATVEDISDVILVGGQTRMPAVQEAVKDFFKK DPRKDVNPDEAVAMGAAIQGAVLSGDRSDVLLLDVTPLTLGIETLGGVMTPMIKRNTTIP TKHSQVFSTAEDNQPAVTIKVYQGEREMAADNKLLGEFNLEGIVPAPRGLPQIEVTFDID ANGILHVSAKDKATGKENQITIKANSGLSDADVERMVADAEANKEEDRRRAELAQARNTA ESSIHQVRKTLKDLGEKVDGADRAACETAINDLEEAVKGEDKDLITKRTDALMAAAQKIG EKLNQQQAQPGAQQEAPKSQKKDDDVVDADFKEV >gi|301349837|gb|ADCQ01000013.1| GENE 43 51235 - 52395 1166 386 aa, chain + ## HITS:1 COG:RSc2634 KEGG:ns NR:ns ## COG: RSc2634 COG0484 # Protein_GI_number: 17547353 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Ralstonia solanacearum # 8 385 5 378 380 407 56.0 1e-113 MADEVDFDYYEVLGVSRTATQEEIKKGYRRMAMKYHPDRNKGDKHAEEKFKQVGEAYEVL KDEQKRAAYDRYGRSAFNGGAGGPGAGGFGGFGGFDASQFGDMGDIFSEIFGGGHARSSG QNKQMFRGEDLIYDLDITLEQAAEGYKTKIKVPSWSKCTACGGSGAEKGTKVETCPTCHG SGYVRAGAGFFQIQQTCPRCHGTGKYIPHPCHKCHGTGMQEEKKELEITIPAGVDDGNRM RIPDRGSPGQNGGPAGDLYIRIRIKPHDIFERDGQDLHMEMPMSFVTAALGGELEVPTLT GKATLRIPEGTQSGKTFRLRGHGIRSVRNAEKGDLYVHTTVEIPVNMTTEQKDILRQFDA SINHSKKDHHAPERKSFFEKLGKLFK >gi|301349837|gb|ADCQ01000013.1| GENE 44 52494 - 52745 90 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHIRLRIVRFSMMCYVFFFVDKCENTSNEGLLISKLMLHSICPIVYKRGIVALISLLGRK SINGGFRHLKPDFTHDFGVLNRI >gi|301349837|gb|ADCQ01000013.1| GENE 45 52711 - 53826 911 371 aa, chain + ## HITS:1 COG:SMc02868 KEGG:ns NR:ns ## COG: SMc02868 COG0845 # Protein_GI_number: 15963946 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Sinorhizobium meliloti # 39 356 47 376 407 157 34.0 3e-38 MLKRTILSLICILGLISCLTACNDKEAVKQKVQAIQVTTLKAEPTTQPYVAEVFGQTEGS KAVIVYPQVTGPVLQRHYAEGQSVKQGDVLFTIDPAPFDAANQSAEASVIQAQVELKQAE REAKRFAALRKVNAVSEKEYSDRISALESCKANLAAAKAKALQTKIQLDYTSVKAPVSGI AGRSLINPGTLVTANNSALTDITQDDQLKARFSLSDNDLHGFTITEDSPVSVMHEKTGVE VPARINFAATQIDPQTGTRSLSAEIERSAELLPGQYVTIRLTLGTQKGVYLIPQSAVRQL PDGTYSVYLYKDGVARAQSVTVGRWSGKDWIITSGLKSGDLVIIDQIQKLRDKAKVALNQ DKKTASKPTEK >gi|301349837|gb|ADCQ01000013.1| GENE 46 53847 - 56936 2681 1029 aa, chain + ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 2 1026 1 1031 1051 914 47.0 0 MLSQFCIRRPIFASVMSILIVIAGLLAGRVLPMGQYPDITPPVVFISTSYEGADAQTLAK TVAAPIEDQLSGVEGLLYYETSIRSNGNVRITCTFEVGTNPNDAMLEINNRVRSAERRLP ESVRQNGVNVRKRSEETLMIVPFYSPNGTLKPIQLADYVNLNVVDAIKRVPGVGDADVFG NAQSAMRIWLNPKKMAQLGITAIDVRKAIEEQNNQYAAGKVGTSPTTDDQQLVYTIRTKG QLLTPEEFGNITVRSRGADGIVRIHDIARVEVGNRSYEAYNQLNDVPSVTFAVYLQTGAN AMQTAVDVKKRLQELSKNFPDDIAYVITDDNSRFVEAALNEVVQTLLEAGLLVLLVVYLF LQNWRATLIPMLAVPVSLIGTLAGLWALNFSLNTLTLFAMTLAIGIVVDDAIVVLENVER IMETEKLNAFQASQKAMKEVAGALVAIVLVLSTVFTPVAFLGGIAGELYRQFAVTIGVSV VLSGFVALTLTPALCAILLRNKSKPFKIFRLFNDGFERFKLNYIKGVSFNLRHRWFTAAI LVAVTVGCWEFLQIVPTSFVPREDQGILRVAIQLPEGATLNRTGVVVTDLSREIRKIPEV ENVTALVANDTIANDTKSNAASLIVQLKPWDQRTRSAETIRRQLQTLVNARTDAVGQAVN PAPIRGLGRAGGLDFYIQSRESDNPLELQQVAEDFRQRLVAKPEISSARSMIQADAPQLY LTVDEAKALAMDVAISDVYDTLGYFMGGKYVNDFTRIGKIFRVIIQADAPYRMTPESLGE LYVRSDTGKMVPLSTLAHVERTSGPESLKRENGFLAASMNVNAAQGYSTGDVIQAVDAES QYLPSGYYVDWTGQAFHEKRIGSSSAAAFAFGLIIVFLILAAQFERWSLPIAVVMAVPYS VLGALVATYFRGFSNDIYFQIGLLVLIGLTAKNAILIVEFAAQKMEEGMEARQAALEAAK LRLRPIVMTSMAFILGVIPLATATGAGAAARQSMGTGVLGGMLAATFITTFFIPVFFTWF VSKKIKTRR >gi|301349837|gb|ADCQ01000013.1| GENE 47 57380 - 57997 64 205 aa, chain - ## HITS:1 COG:sll0998 KEGG:ns NR:ns ## COG: sll0998 COG0583 # Protein_GI_number: 16329741 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 6 195 11 194 345 72 27.0 4e-13 MLDSNLPVFISVAESGSFSQAALRLGKSPQAVFKQITTYEEKLGVKLFDRSPTGMRLTPA GISVYKDAKFLLSFSKESIKRAKEIEKNEGNLVRVALSPLTPTKFLGQVWPIASKQYPDL RIQLVPFENEKNIVWNMLSHLGSDGQVDIVVATYDEDFLERRNCTALKLRDLQLSICMSS THKLAQKEKISIEDLVEATRRRGGG >gi|301349837|gb|ADCQ01000013.1| GENE 48 58394 - 61822 2460 1142 aa, chain + ## HITS:1 COG:PA3535_1 KEGG:ns NR:ns ## COG: PA3535_1 COG1404 # Protein_GI_number: 15598731 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Pseudomonas aeruginosa # 35 545 13 407 453 182 32.0 5e-45 MNKAFKAIWSDVRQSFVTTSEIQSSHGKRSKASVSLSVATVLLATSGLVSAAYVETGTLG DKASWETAEYNYNWGLGAMNASSAYALGFYGQNTTTGVMDSGAWLGNPDLDTPRITATHV TGVYGSSGNRYPQSIYATIQKGVVPTAAEGQPFTEGEEFDVKGDYTLGLNDAHGTQVTGV IGAERNGEYGHGVAFKANVVVGNTGATDNNNYGPFQDYNYYFKGYKALADAVNAGNGEYR GGMVNNSYGTNTKIYSSGGHRLTPDEMSELLAGSGNYDRASAAYAVTFSGDYSFLGLNDV PGADQYSTNPSAFEWEYMYFKLKYGDKPSFLDGAYDAVKGTNVILSWAAGNQDRGTPYLK GLYPYFHPEAEKNWLNAVGVMQTRGDNDQYMQATYCKAGLAKWWSMSGPTAYPGIGTTYV TTDLENGRLTTTGFNGTSASDPQISGAFTVLQSRYPSMTAIQVKDVMYTTASHIGANGQP FTNWTAAEGTPDVIYGWGMPDLEKGMYGPGQFLDHFEYRLSEPLDVWSNDITEAGLQQRE KEDKAWMTATKNGTDPDAGGEYTLGDDIVVLDGNLDFYDNTVSPEQAKKWRAEYYAARAA YIQNKIDNNLYKGALIKSGQGTLVMTGNNSYTGGTEVKEGSLFGFTESFGSADVNVNGGT FGILATFNDNFTQKGQLNSLVGVARAPIQKANVVVNDGGTYAIVADQDVQVGNLTFNPGS KVTVTSLTDNAFEKAYDGIDQVGTVTADKIEGFNENAVVTPDFALVDHTVTLDGNTLTGI LTKNDKTLADYAANSNGVAVANALMADDALLAVLTDATKDEARNTLNSLGNDIHVTANAM TIANGQSLVRAIKDQAIGIDGAAHVADVDGGRARLWLSAVGNWSKMDRAGASKLKADFYT GLVGLEADINANNKVGVFFGAGKTKFKGGHDGKIDSDDLHFGIYGQSKFEPVRLNYGFAY THQDRDANSALFYKNQAFAASPSYNAKLAQIFGEVAYTGLNLGTVNVEPYVGLAWMHLSA DDFSNDYVGGKVSTKFDSQNLAVSNLGARVKVPFEVGPAKFKAVADVNWTQYMGDTLGKS TLKFGNGASATIKSEKLSAVAAVGVGLEAQLGKRASLGVSYYGAYGSKIKSNGVGATFKL AF >gi|301349837|gb|ADCQ01000013.1| GENE 49 61827 - 61913 76 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQSALGMERTLPLGASLDEAPTTQGEK >gi|301349837|gb|ADCQ01000013.1| GENE 50 61950 - 63284 1760 444 aa, chain + ## HITS:1 COG:Cj0088 KEGG:ns NR:ns ## COG: Cj0088 COG2704 # Protein_GI_number: 15791476 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Campylobacter jejuni # 1 440 1 440 445 491 69.0 1e-138 MSIMVILQIIVLLGAIFIGVRLGGIGIGYAGGAGVLVLGLCLGMKPGNIPWDVILIIASV IAAISAMQLAGGLQYLVYIAEKILYKNPKYINYLAPIVTYVLTIFAGTGHTAFSMIPVIV EVAKGENIRPSVPLSIAVVASQIAITASPVSAAVIYMTGVLEPFGWSYPALLGVWLLTTF LGCMITAFIMTHISKMDLASDAIYQERLKEGLVKPPVGLKDMTITPSAKLSVWIFLIGVL CVVFYASAISPAVGLIKPVIVPRDAAIMSLMLAVGALITVLCKVNLGDVAGTSVFKSGMV ACVCVLGVAWLGDTFVSGHTKEIKDFAAQTISQYPALLAVVFFLAAMLLYSQAATAKAIT PTVVAALGITAANPDNSYMLVACFAAVSALFVLPTYPTLLGAVQMDDTGTTRIGKWVFNH SFFIPGVLAIFFSVALGFVVCGFV >gi|301349837|gb|ADCQ01000013.1| GENE 51 63338 - 63460 66 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSAVFLWLCKAGTVLYCLTMLVLTIAYCSVSIYRNYFDNK >gi|301349837|gb|ADCQ01000013.1| GENE 52 63725 - 64513 1181 262 aa, chain - ## HITS:1 COG:RSc2512 KEGG:ns NR:ns ## COG: RSc2512 COG0834 # Protein_GI_number: 17547231 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Ralstonia solanacearum # 13 261 11 258 267 172 39.0 5e-43 MKHGKLVTSILVLSLAAVTAAFASMAEARSLEQIKASGELLVGSTGDYKPMSYLNKETGK YEGFDAEMAESLAKYLGVKLKYVPTTWKTLQADTMADKFDVAMSGITVTDARKKVMTMSD GYLTFGKTILVTKNKAGQFKELNDVNQPTVRVMYNPGGTNEKFAKEMTPKAQLMMHEHNA EIPGLVGEGKADVMITETMEARRYAKDNPKIAAPLVDKPFTENHFGVLMKQGYPKLEAAV NDWMKTIKGNGTMAKWEDQYIK >gi|301349837|gb|ADCQ01000013.1| GENE 53 64440 - 64658 152 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLANAAVTAAKDKTKMEVTSFPCFIFISSPKRGLIDSVYDSKPSKTKINPILLKDFANIS RFICGEWERKAF >gi|301349837|gb|ADCQ01000013.1| GENE 54 64696 - 65499 217 267 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 1 233 73 287 287 88 30 1e-16 PALPSPNFPLMTVLKILYQDEDLVVVSKPEKMLTHRTEIANGDTEFALQLLRDQIGRRVS PVYRLDRGTSGILMFGLNREIVSALSQQTHETFHKRYYAVVRGWAPEDIEVRHALKPPVD PYLRVQKTEAQDALSYLHRLAESEVPVSSGKFDTTRLSLVLLELATGRRHQLRRHLKHLA HPIIGDATYGKGPLNRALAEYFGGDRLLLHCGRISFIHPRTQKRLTIEDQPSGLMLQIIE RLRWGNSLHASYSKEWHLFDYSDILLK >gi|301349837|gb|ADCQ01000013.1| GENE 55 65578 - 66600 1285 340 aa, chain - ## HITS:1 COG:SMa1737 KEGG:ns NR:ns ## COG: SMa1737 COG2855 # Protein_GI_number: 16263410 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Sinorhizobium meliloti # 18 340 30 352 352 197 40.0 2e-50 MTTEKVSLKHWLETRWRGTLMAVIIGAASLFVSEHYGGPAVLFALLIGMAFHFLSEDRRT LAGIHFCSTTVLRWGVGLLGAKITASQLGLLSPALLAMIIGGVFATLLFGAFITRFSKWP LTEGTLAAASTAICGASAAIALAATFNHKQLREQALLAIVVTVTALSTLAMVLYPFISGW CGFDHIDAGIFLGGTIHDVAQVVGAGAMIGPDALEIASLTKMIRVALLIPILIIFMFVFS SKAHRTEEEKAKPWYKNIPMFLLGFIALAALNCTGIIPTNVSNTLGEISRLFILISISAL GLKTSLGKLKEVGWTPIVLMSIDTVFLLLWVIIGIFLIRG >gi|301349837|gb|ADCQ01000013.1| GENE 56 66604 - 68418 1413 604 aa, chain - ## HITS:1 COG:NMA1640 KEGG:ns NR:ns ## COG: NMA1640 COG0006 # Protein_GI_number: 15794534 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Neisseria meningitidis Z2491 # 3 604 63 657 659 473 43.0 1e-133 MNSSISSRVSALRVFLKDHGLNGWIVPTADPHLSEYVDEHYAFRKWLSGFTGSAGSLLVT QDAAALVTDSRYWVQAEQQLEGSGIELVKLNQGYAAESADWFAAHLMANDCVGINSELIS GKDAKNYARVFAEKHLHLSLVRQTPEETIWEERPERAEKPIFDHTVSPRNREQKLTALRE VLKKEGADYLLTSKLDDIAWIFNLRGSDVPNNPVFYAYALIPSKGTATLFINEEKVPANL RELLFRDGVALAPYHCVGKTLASLSSGTVLADPEEINASLLSHLPEQITQLELPNPIERM KALKTPEEINLISDAMIKDGVALVRFFAWLDRNLGKEEMTEQSLADKLLFFRKSLPGYIS LSFETISAFGSNAALPHYQPDKSGGAPIKDNGFLLIDSGAQFPEGTTDITRTKLIGKATD LMKEDYTAVLRANIRLAMAVFPDGISSQLLDPLAREPIWQHFANFGHGTGHGVGFFLNVH EGPQRISYPRISPRSDAFISKETAMSEGMVTSDEPGIYRPGRWGIRIENLVATEFAEENE FGRFLKFKTLTLCPIDLSAVIPERLQPDEKKWLNEYHTLVRQKVLPHIHDERTIVWLVWN TREI >gi|301349837|gb|ADCQ01000013.1| GENE 57 68440 - 68796 388 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860119|gb|EFL83196.1| ## NR: gi|302860119|gb|EFL83196.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 118 1 118 118 204 100.0 2e-51 MVSKRLLLTAAALAALALAGCSSTGSHSAFTPHADRAGLDPLLDAPLRTETVCKGAGLFT AGTKLGGFSFECPDLDVVATLNELRDAGWRVEKMHIGRQTIENDESGTPLSATIRKVY >gi|301349837|gb|ADCQ01000013.1| GENE 58 68786 - 69889 1054 367 aa, chain - ## HITS:1 COG:PA1750 KEGG:ns NR:ns ## COG: PA1750 COG0722 # Protein_GI_number: 15596947 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Pseudomonas aeruginosa # 13 361 2 350 358 402 55.0 1e-112 MQTPKLNEVKQQAGFSLEDINIEGFAPMPSPAEIKKMAPLTEAAAENVNKSRNQIKQILT GEDNRLMVITGPCSIHDPKAALDYAQRLAELSEHISETIFPVMRVYFEKPRTVVGWKGYI NDPDMNNSFNMAKGMLKARELMIKINEMGLAVATEALDPFGPQYLGELVSWYAIGARTTE SQTHREMASGLSAPVGFKNGTDGLLDSSINAVKASRQSHYFLGIYENGQSSIIKTKGNRY SHLVLRGGGGRPNFDTVSVMLAEKALKDAGVDSRIVVDCSHANSMKNPDLQPFVLNDCIT QIVNGNKSICGVMLESNINAGNQKIPADLSQLKYGVSVTDACIDWETTEHALRMTNRRLL DKKLNGE >gi|301349837|gb|ADCQ01000013.1| GENE 59 70055 - 71326 1165 423 aa, chain - ## HITS:1 COG:ECs0875 KEGG:ns NR:ns ## COG: ECs0875 COG0513 # Protein_GI_number: 15830129 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 4 374 2 374 455 373 55.0 1e-103 MSNSFKTLGFAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLP MLQKIIEEPTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQK AAIAKGLDFLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPP DRQTLLFSATFSPEIKKLASEFLNKPESVEIERNKDSSLVRQTLYRVPKADKHTVLRDLI VDNQWDQVLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILV ATDIAARGLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLAAI EKFIKKPLPLSDFPRLDYSDWKVSAPTKPQNKNRRPGPRRNGPAGFKRSDGKPSVRRRTA RGQ >gi|301349837|gb|ADCQ01000013.1| GENE 60 71463 - 71876 606 137 aa, chain + ## HITS:1 COG:RSc0784 KEGG:ns NR:ns ## COG: RSc0784 COG0545 # Protein_GI_number: 17545503 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Ralstonia solanacearum # 12 115 10 117 117 139 66.0 1e-33 MFGIDTQDIQDLKIVDVKVGTGAEAKPGELVRVHYTGWLEDGTKFDSSVDRNEPFEFPLG AGYVIQGWDRGVAGMKVGGVRRLFIPSQLAYGDRGAGSVIPPNATLIFEIQLLGVKDNGK WQLEEDVITPVSAPDVK >gi|301349837|gb|ADCQ01000013.1| GENE 61 72093 - 72707 636 204 aa, chain - ## HITS:1 COG:NMB2049 KEGG:ns NR:ns ## COG: NMB2049 COG0491 # Protein_GI_number: 15677871 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Neisseria meningitidis MC58 # 5 204 7 210 210 140 38.0 2e-33 MSVAVFPLGPLETNCYIVSNEGQAVAIDVGGDPAPVSKYLKEHGLELKAICITHMHFDHL YGVAALAAETHATVYTPEKDKVIASTVLGQGGSSGFPAVPKFESVSIEPGNKTEFAGLEC KVLSVPGHTPGSVAYYFKKEKCVFVGDTLFLESIGRTDFPFSSHEQLVTSIRSELFSLPD DTIVYPGHGPETSIGYEKEHNAFL >gi|301349837|gb|ADCQ01000013.1| GENE 62 72839 - 73702 783 287 aa, chain - ## HITS:1 COG:DRA0184 KEGG:ns NR:ns ## COG: DRA0184 COG2240 # Protein_GI_number: 15807852 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Deinococcus radiodurans # 1 286 39 327 329 223 40.0 4e-58 MSRYVLTIQSHVAYGFVGNSAAVFPLQLLGFSPIVVNTVEFSNHTGHPTFHGQVFTAELI RDIILGIRERGLMPKIEGLLSGYLGDASIGKIVLDLATEIKAANPDAIWLCDPVMGDTDT GVFVRPDIPQFMKEHFLNGLADMTKPNQFELELLSGRKMRSRQETVDTARELFTDKGCRV TFVTSLLTPDVPEDTVETLAITKDDAWVVRTPLVERKPTPNGQGDTFSSVALGTYLKTKS AKDALEAAVNTLYGLVSHMDSGALDLPLVDEQRQILSPEHRFEAVRC >gi|301349837|gb|ADCQ01000013.1| GENE 63 73712 - 74239 645 175 aa, chain - ## HITS:1 COG:RSc0980 KEGG:ns NR:ns ## COG: RSc0980 COG2059 # Protein_GI_number: 17545699 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Ralstonia solanacearum # 2 173 8 179 181 85 34.0 6e-17 MTPALFAGLFFHFMLLSLIAIGGFMATLPGMYSYLVDTAGLLTPETFAKTVAFGQSLPGP NVLVAAVLGWAAAGPLGALATFGGTSIPFLLIAVLAGRYIREHASSVFVKSYKAGMAPVA VGLLFATAYLLLGNQLDNWRVWAWAGAVTIIVWKTHVPLILLIMIGGVMGLLGCF >gi|301349837|gb|ADCQ01000013.1| GENE 64 74236 - 74838 510 200 aa, chain - ## HITS:1 COG:RSc0979 KEGG:ns NR:ns ## COG: RSc0979 COG2059 # Protein_GI_number: 17545698 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Ralstonia solanacearum # 17 194 21 193 193 96 34.0 3e-20 MTSTAKYKTSAPNKPKSCWDLFCSFTLMAMQAFGGSTAIAQQFLVDQKKWLTQSEFLDLL TVSQVLPGPNIMILTIMVGDRHFGWRGALASFLGMITLPATLMLSVFVFYQQYAENKWVS DALVGMAASASGMVAGAAMKLLYNCKENTITPPVWIFGLVITFITVGVLKISMVYILPIV GIPLSFWAWYRFIKERSAQS >gi|301349837|gb|ADCQ01000013.1| GENE 65 74903 - 75499 664 198 aa, chain - ## HITS:1 COG:ECs4120 KEGG:ns NR:ns ## COG: ECs4120 COG0424 # Protein_GI_number: 15833374 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli O157:H7 # 2 191 3 183 197 171 51.0 9e-43 MAFYLASKSPRRRELLKDAGFDFDILLSKTSDSVNEDVLPGESPEDYVARVTREKAKWGR KVAETERDLLLPVLAADTTVALNGKIYGKPADEKEAFEFLKDFSGQTHEVLTAVCLVDKG GKPRETLTKTFVTFRPLTDEEINSYIASGEPFDKAGGYGIQGLAGQFVEKVEGSYSGVIG LPVDETKALLAEIGIRPR >gi|301349837|gb|ADCQ01000013.1| GENE 66 75503 - 75970 465 155 aa, chain - ## HITS:1 COG:RSc2195 KEGG:ns NR:ns ## COG: RSc2195 COG1576 # Protein_GI_number: 17546914 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 154 1 155 156 161 52.0 5e-40 MKISVVAVGLKMPKWADEACEDYLHRFPSDWKLELKTVKAEDRNTRTIPKVMQAEAERIR AALPKDAIKVIMDERGADPTSTKLAQQINRWGDQGRPIAFIIGGADGIDPGLKAEADFTL RLSSLTLPHAMARVLLLEQIYRSWSLLHNHPYHRA >gi|301349837|gb|ADCQ01000013.1| GENE 67 75980 - 76351 563 123 aa, chain - ## HITS:1 COG:RSc2194 KEGG:ns NR:ns ## COG: RSc2194 COG0799 # Protein_GI_number: 17546913 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Ralstonia solanacearum # 1 113 1 113 203 155 65.0 1e-38 MDIRKLQRVIVNALEDVKAQDIKIFNTSKQTALFERVIVATANSNRQTRALGHHVFMEVK ENGGDAVGIEGLETGEWVLVDCRSAIVHIMQPALRAYYNLEELWGGHPVRMKLLEDENKE DSE Prediction of potential genes in microbial genomes Time: Fri May 13 05:38:54 2011 Seq name: gi|301349836|gb|ADCQ01000014.1| Burkholderiales bacterium 1_1_47 cont1.14, whole genome shotgun sequence Length of sequence - 158769 bp Number of predicted genes - 147, with homology - 147 Number of transcription units - 73, operones - 35 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 2 Op 1 . - CDS 1495 - 2148 498 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 3 2 Op 2 . - CDS 2145 - 2879 733 ## gi|302860132|gb|EFL83209.1| conserved hypothetical protein 4 2 Op 3 1/0.185 - CDS 2890 - 4167 1466 ## COG0151 Phosphoribosylamine-glycine ligase 5 2 Op 4 . - CDS 4203 - 4925 1057 ## COG0217 Uncharacterized conserved protein - Prom 4957 - 5016 4.6 6 3 Tu 1 . - CDS 5134 - 6087 772 ## COG0583 Transcriptional regulator - Prom 6114 - 6173 5.5 + Prom 6204 - 6263 3.6 7 4 Op 1 . + CDS 6302 - 7576 1739 ## COG3069 C4-dicarboxylate transporter 8 4 Op 2 . + CDS 7579 - 8988 1092 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 9 4 Op 3 . + CDS 9011 - 10216 1394 ## COG3203 Outer membrane protein (porin) 10 4 Op 4 . + CDS 10271 - 11752 1174 ## COG0165 Argininosuccinate lyase 11 4 Op 5 . + CDS 11745 - 12947 1023 ## COG0477 Permeases of the major facilitator superfamily 12 5 Tu 1 . + CDS 13078 - 14352 1638 ## COG3875 Uncharacterized conserved protein + Term 14376 - 14402 -1.0 - Term 14362 - 14390 1.0 13 6 Op 1 1/0.185 - CDS 14399 - 15235 584 ## COG1606 ATP-utilizing enzymes of the PP-loop superfamily 14 6 Op 2 2/0.185 - CDS 15228 - 16157 842 ## COG1641 Uncharacterized conserved protein 15 6 Op 3 . - CDS 16102 - 16764 343 ## COG1691 NCAIR mutase (PurE)-related proteins - Prom 16796 - 16855 2.0 16 6 Op 4 . - CDS 16858 - 17853 1015 ## COG2768 Uncharacterized Fe-S center protein - Prom 17886 - 17945 8.3 + Prom 18189 - 18248 8.0 17 7 Tu 1 . + CDS 18427 - 19788 1818 ## COG2704 Anaerobic C4-dicarboxylate transporter + Term 19824 - 19874 14.4 + Prom 19819 - 19878 3.1 18 8 Op 1 . + CDS 19951 - 20211 315 ## gi|302860148|gb|EFL83225.1| NapD protein 19 8 Op 2 10/0.037 + CDS 20248 - 23013 3153 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 20 8 Op 3 7/0.037 + CDS 23081 - 23812 485 ## COG1145 Ferredoxin 21 8 Op 4 . + CDS 23812 - 24696 841 ## COG0348 Polyferredoxin 22 8 Op 5 . + CDS 24705 - 25016 511 ## CCC13826_0865 periplasmic nitrate reductase, diheme cytochrome c subunit - Term 25025 - 25065 -1.0 23 9 Op 1 8/0.037 - CDS 25085 - 25729 630 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 24 9 Op 2 . - CDS 25729 - 27591 1062 ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - Prom 27656 - 27715 3.1 - Term 27675 - 27714 1.3 25 10 Tu 1 . - CDS 27735 - 29015 1519 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 29129 - 29188 5.7 + Prom 29093 - 29152 3.9 26 11 Tu 1 . + CDS 29302 - 30573 1880 ## COG3069 C4-dicarboxylate transporter + Term 30593 - 30644 11.1 + Prom 30671 - 30730 7.5 27 12 Tu 1 . + CDS 30770 - 32038 1792 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 32061 - 32109 9.2 - Term 32259 - 32293 5.0 28 13 Tu 1 . - CDS 32320 - 33162 1013 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 33255 - 33314 3.5 - Term 33257 - 33310 7.2 29 14 Tu 1 . - CDS 33333 - 33983 785 ## COG0035 Uracil phosphoribosyltransferase - Prom 34188 - 34247 4.4 + Prom 34600 - 34659 2.3 30 15 Tu 1 . + CDS 34689 - 35216 596 ## DaAHT2_0718 hypothetical protein + Term 35233 - 35268 7.4 - Term 35221 - 35256 7.4 31 16 Op 1 1/0.185 - CDS 35276 - 36262 1056 ## COG0158 Fructose-1,6-bisphosphatase 32 16 Op 2 . - CDS 36314 - 39022 2861 ## COG0308 Aminopeptidase N - Prom 39086 - 39145 2.5 + Prom 39097 - 39156 4.1 33 17 Tu 1 . + CDS 39179 - 40609 1952 ## COG4690 Dipeptidase + Term 40652 - 40716 5.3 - Term 40658 - 40691 4.5 34 18 Tu 1 . - CDS 40705 - 41439 933 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit - Prom 41462 - 41521 3.3 - Term 41487 - 41520 3.1 35 19 Tu 1 . - CDS 41587 - 42339 890 ## COG2005 N-terminal domain of molybdenum-binding protein - Prom 42417 - 42476 7.8 + Prom 42318 - 42377 7.8 36 20 Op 1 23/0.000 + CDS 42445 - 43194 941 ## COG0725 ABC-type molybdate transport system, periplasmic component 37 20 Op 2 13/0.000 + CDS 43213 - 43893 778 ## COG4149 ABC-type molybdate transport system, permease component 38 20 Op 3 . + CDS 43915 - 45003 780 ## COG4148 ABC-type molybdate transport system, ATPase component + Term 45102 - 45147 7.1 - Term 44939 - 44973 3.2 39 21 Op 1 . - CDS 45000 - 45857 804 ## gi|302860169|gb|EFL83246.1| peptidase, M23 family 40 21 Op 2 3/0.111 - CDS 45875 - 46774 689 ## PROTEIN SUPPORTED gi|56476248|ref|YP_157837.1| ribosomal protein L11 methyltransferase 41 21 Op 3 27/0.000 - CDS 46786 - 48144 1599 ## COG0439 Biotin carboxylase 42 21 Op 4 9/0.037 - CDS 48158 - 48625 715 ## COG0511 Biotin carboxyl carrier protein 43 21 Op 5 . - CDS 48659 - 49093 382 ## COG0757 3-dehydroquinate dehydratase II - Prom 49170 - 49229 6.3 44 22 Tu 1 . - CDS 49275 - 49916 615 ## Ajs_3641 hypothetical protein + Prom 49910 - 49969 2.5 45 23 Op 1 1/0.185 + CDS 49993 - 51351 1246 ## COG0773 UDP-N-acetylmuramate-alanine ligase 46 23 Op 2 . + CDS 51356 - 51928 617 ## COG3150 Predicted esterase + Prom 51979 - 52038 2.5 47 24 Op 1 2/0.185 + CDS 52085 - 54079 1685 ## COG0557 Exoribonuclease R 48 24 Op 2 . + CDS 54158 - 54985 972 ## COG0169 Shikimate 5-dehydrogenase 49 24 Op 3 . + CDS 55010 - 56467 1634 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 50 24 Op 4 . + CDS 56493 - 57686 688 ## ECSE_1042 phosphoanhydride phosphorylase + Term 57711 - 57755 8.4 + Prom 57732 - 57791 2.9 51 25 Tu 1 . + CDS 57901 - 59394 2226 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 59426 - 59453 1.5 - Term 59410 - 59446 4.6 52 26 Tu 1 . - CDS 59452 - 60567 774 ## BDI_1313 hypothetical protein - Prom 60706 - 60765 3.6 + Prom 60669 - 60728 2.8 53 27 Tu 1 . + CDS 60748 - 61938 765 ## COG0477 Permeases of the major facilitator superfamily + Term 61974 - 62010 -0.3 54 28 Tu 1 . - CDS 61935 - 62627 538 ## Dacet_2090 putative transcriptional regulator, Crp/Fnr family - Prom 62698 - 62757 2.8 + Prom 62602 - 62661 3.5 55 29 Tu 1 . + CDS 62713 - 63663 820 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 63710 - 63747 7.8 56 30 Tu 1 . - CDS 63676 - 64386 394 ## COG1385 Uncharacterized protein conserved in bacteria - Prom 64413 - 64472 6.7 + Prom 64347 - 64406 4.1 57 31 Op 1 5/0.111 + CDS 64567 - 66585 2524 ## COG0021 Transketolase 58 31 Op 2 26/0.000 + CDS 66588 - 67601 1450 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 59 31 Op 3 . + CDS 67665 - 68864 1594 ## COG0126 3-phosphoglycerate kinase + Term 68884 - 68926 6.2 - Term 68957 - 69000 3.1 60 32 Op 1 . - CDS 69066 - 69593 172 ## DVU2808 TonB domain-containing protein 61 32 Op 2 . - CDS 69590 - 70003 304 ## Dvul_0506 biopolymer transport protein ExbD/TolR 62 32 Op 3 . - CDS 70040 - 70645 589 ## COG0811 Biopolymer transport proteins 63 32 Op 4 . - CDS 70636 - 72333 520 ## COG0523 Putative GTPases (G3E family) 64 32 Op 5 . - CDS 72382 - 73530 1331 ## Ddes_1722 metallo-beta-lactamase family protein 65 32 Op 6 . - CDS 73546 - 74946 1621 ## Ddes_1721 amino acid transporter, AAT family - Prom 74967 - 75026 2.0 - Term 75569 - 75609 4.0 66 33 Op 1 . - CDS 75635 - 76288 196 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 - Prom 76309 - 76368 3.5 67 33 Op 2 . - CDS 76380 - 77030 186 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 - Prom 77057 - 77116 2.7 + Prom 77021 - 77080 4.1 68 34 Op 1 12/0.037 + CDS 77201 - 79096 1290 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 69 34 Op 2 . + CDS 79096 - 80040 739 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase + Term 80069 - 80103 1.1 - Term 79993 - 80032 6.2 70 35 Op 1 . - CDS 80052 - 80564 446 ## gi|302860200|gb|EFL83277.1| hypothetical protein HMPREF0189_00354 - Prom 80589 - 80648 6.2 - Term 80609 - 80639 2.1 71 35 Op 2 . - CDS 80664 - 82187 797 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 - Prom 82217 - 82276 5.9 - Term 82338 - 82371 4.5 72 36 Tu 1 . - CDS 82416 - 83684 1512 ## COG2195 Di- and tripeptidases - Prom 83738 - 83797 2.1 - Term 83854 - 83892 -0.8 73 37 Op 1 . - CDS 83917 - 85323 1956 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 74 37 Op 2 . - CDS 85358 - 86353 660 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Term 86369 - 86406 8.5 75 38 Op 1 . - CDS 86420 - 87688 1722 ## COG3069 C4-dicarboxylate transporter - Prom 87798 - 87857 2.2 76 38 Op 2 . - CDS 87859 - 88830 670 ## COG0583 Transcriptional regulator - Prom 88868 - 88927 3.5 - Term 88869 - 88912 10.1 77 39 Tu 1 . - CDS 88929 - 89963 1085 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase - Prom 90043 - 90102 3.2 - Term 90094 - 90126 3.0 78 40 Tu 1 . - CDS 90148 - 90600 524 ## COG1651 Protein-disulfide isomerase - Prom 90840 - 90899 4.5 79 41 Op 1 3/0.111 + CDS 90744 - 91454 654 ## COG0593 ATPase involved in DNA replication initiation 80 41 Op 2 1/0.185 + CDS 91451 - 92143 441 ## COG0560 Phosphoserine phosphatase 81 41 Op 3 7/0.037 + CDS 92172 - 93611 1454 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 82 41 Op 4 4/0.111 + CDS 93615 - 94166 376 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 83 41 Op 5 19/0.000 + CDS 94135 - 94947 960 ## COG0413 Ketopantoate hydroxymethyltransferase 84 41 Op 6 . + CDS 94963 - 95811 872 ## COG0414 Panthothenate synthetase + Prom 95863 - 95922 2.0 85 42 Op 1 . + CDS 96050 - 96733 167 ## COG0655 Multimeric flavodoxin WrbA 86 42 Op 2 1/0.185 + CDS 96743 - 97168 262 ## COG1359 Uncharacterized conserved protein + Prom 98008 - 98067 3.9 87 43 Op 1 31/0.000 + CDS 98190 - 98957 1041 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 98977 - 99013 4.0 + Prom 98963 - 99022 3.9 88 43 Op 2 34/0.000 + CDS 99047 - 99799 921 ## COG0765 ABC-type amino acid transport system, permease component 89 43 Op 3 . + CDS 99796 - 100569 324 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 90 44 Tu 1 . - CDS 100622 - 101518 881 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 101556 - 101615 2.4 91 45 Tu 1 . + CDS 101602 - 102585 378 ## COG0583 Transcriptional regulator 92 46 Op 1 . - CDS 102582 - 102959 383 ## COG3169 Uncharacterized protein conserved in bacteria 93 46 Op 2 . - CDS 103030 - 103926 829 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 103981 - 104040 3.8 94 47 Op 1 1/0.185 + CDS 104062 - 104811 485 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 95 47 Op 2 . + CDS 104815 - 105072 401 ## COG1977 Molybdopterin converting factor, small subunit + Prom 105076 - 105135 1.9 96 48 Op 1 . + CDS 105219 - 106169 885 ## Shal_1631 hypothetical protein 97 48 Op 2 . + CDS 106254 - 108575 2713 ## COG0855 Polyphosphate kinase + Term 108599 - 108636 3.5 98 48 Op 3 . + CDS 108644 - 109621 679 ## Ajs_0810 hypothetical protein + Term 109632 - 109662 4.3 - Term 109611 - 109659 17.4 99 49 Tu 1 . - CDS 109675 - 111234 1086 ## gi|302860230|gb|EFL83307.1| putative transposase subfamily - Prom 111385 - 111444 8.5 + Prom 111571 - 111630 4.8 100 50 Tu 1 . + CDS 111650 - 113014 962 ## COG2067 Long-chain fatty acid transport protein + Term 113041 - 113068 -0.8 - Term 112792 - 112828 -0.8 101 51 Tu 1 . - CDS 113065 - 114216 1097 ## COG2814 Arabinose efflux permease - Prom 114257 - 114316 6.6 - Term 114259 - 114311 13.1 102 52 Op 1 . - CDS 114330 - 114692 399 ## COG0251 Putative translation initiation inhibitor, yjgF family 103 52 Op 2 . - CDS 114689 - 115834 986 ## COG3616 Predicted amino acid aldolase or racemase - Prom 115863 - 115922 6.1 - TRNA 116074 - 116158 67.9 # Leu CAA 0 0 - TRNA 116169 - 116244 93.0 # Thr CGT 0 0 104 53 Tu 1 . - CDS 116415 - 116870 223 ## COG3153 Predicted acetyltransferase + Prom 116942 - 117001 4.9 105 54 Op 1 13/0.000 + CDS 117165 - 117662 473 ## COG0802 Predicted ATPase or kinase 106 54 Op 2 . + CDS 117662 - 119092 973 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Prom 119156 - 119215 5.2 107 55 Op 1 . + CDS 119266 - 120333 1369 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 120351 - 120379 1.0 + Prom 120345 - 120404 3.8 108 55 Op 2 . + CDS 120428 - 120829 451 ## COG0818 Diacylglycerol kinase + Term 120866 - 120906 6.0 - Term 120848 - 120900 14.8 109 56 Op 1 . - CDS 120913 - 122292 1861 ## COG0015 Adenylosuccinate lyase - Prom 122315 - 122374 1.8 - Term 122409 - 122453 6.6 110 56 Op 2 5/0.111 - CDS 122468 - 122962 408 ## COG3762 Predicted membrane protein 111 56 Op 3 8/0.037 - CDS 122966 - 123967 1011 ## COG1512 Beta-propeller domains of methanol dehydrogenase type 112 56 Op 4 . - CDS 123933 - 124556 712 ## COG1704 Uncharacterized conserved protein 113 56 Op 5 . - CDS 124580 - 125140 666 ## COG0778 Nitroreductase - Prom 125171 - 125230 2.6 114 57 Op 1 . - CDS 125248 - 126066 740 ## COG0796 Glutamate racemase 115 57 Op 2 1/0.185 - CDS 126059 - 126964 750 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 116 57 Op 3 4/0.111 - CDS 126961 - 127839 816 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 117 57 Op 4 1/0.185 - CDS 127836 - 128840 1072 ## COG0009 Putative translation factor (SUA5) 118 57 Op 5 29/0.000 - CDS 128845 - 130014 1284 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 119 57 Op 6 4/0.111 - CDS 130022 - 130516 768 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Term 130539 - 130568 3.5 120 57 Op 7 . - CDS 130592 - 131485 1171 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - Prom 131554 - 131613 3.4 - Term 131614 - 131653 5.1 121 58 Tu 1 . - CDS 131673 - 132629 1017 ## gi|302860252|gb|EFL83329.1| conserved hypothetical protein - Prom 132839 - 132898 2.4 + Prom 132661 - 132720 3.0 122 59 Tu 1 . + CDS 132750 - 133208 404 ## gi|302860253|gb|EFL83330.1| hypothetical protein HMPREF0189_00407 + Term 133274 - 133329 2.1 - Term 133139 - 133178 6.3 123 60 Op 1 6/0.074 - CDS 133186 - 133833 631 ## COG0352 Thiamine monophosphate synthase 124 60 Op 2 . - CDS 133830 - 134630 667 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family - Prom 134660 - 134719 3.2 + Prom 134586 - 134645 2.0 125 61 Tu 1 . + CDS 134670 - 135152 543 ## COG2947 Uncharacterized conserved protein + Prom 135155 - 135214 5.2 126 62 Tu 1 . + CDS 135255 - 136070 831 ## COG0730 Predicted permeases + Term 136094 - 136123 3.5 + Prom 136122 - 136181 2.6 127 63 Op 1 . + CDS 136202 - 137686 1434 ## COG2925 Exonuclease I 128 63 Op 2 . + CDS 137690 - 138478 820 ## COG0682 Prolipoprotein diacylglyceryltransferase + Term 138517 - 138561 8.3 129 64 Tu 1 . - CDS 138475 - 139479 1249 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Prom 139553 - 139612 5.2 - Term 139732 - 139764 2.3 130 65 Op 1 . - CDS 139924 - 140271 186 ## gi|302860261|gb|EFL83338.1| conserved hypothetical protein 131 65 Op 2 . - CDS 140277 - 140498 134 ## gi|302860262|gb|EFL83339.1| putative alanyl-tRNA synthetase 132 65 Op 3 3/0.111 - CDS 140502 - 141305 901 ## COG0289 Dihydrodipicolinate reductase - Prom 141408 - 141467 4.2 - Term 141450 - 141484 5.0 133 66 Tu 1 . - CDS 141512 - 142030 469 ## COG2913 Small protein A (tmRNA-binding) - Prom 142061 - 142120 3.8 + Prom 142006 - 142065 4.4 134 67 Tu 1 . + CDS 142133 - 142591 392 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 142621 - 142660 6.0 - Term 142609 - 142648 5.2 135 68 Op 1 17/0.000 - CDS 142662 - 144317 1425 ## COG0497 ATPase involved in DNA repair 136 68 Op 2 . - CDS 144324 - 145196 576 ## COG0061 Predicted sugar kinase 137 68 Op 3 . - CDS 145207 - 145902 288 ## gi|302860268|gb|EFL83345.1| hypothetical protein HMPREF0189_00422 138 68 Op 4 . - CDS 145925 - 146317 558 ## Pjdr2_0223 protein of unknown function DUF423 139 68 Op 5 1/0.185 - CDS 146327 - 147115 653 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 147182 - 147241 4.2 - Term 147276 - 147320 0.5 140 69 Tu 1 . - CDS 147340 - 149103 1681 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Prom 149123 - 149182 4.2 141 70 Op 1 2/0.185 + CDS 149514 - 149960 258 ## COG0500 SAM-dependent methyltransferases 142 70 Op 2 . + CDS 149994 - 150449 390 ## COG0328 Ribonuclease HI + Term 150503 - 150571 31.3 + TRNA 150481 - 150555 76.6 # Val CAC 0 0 - Term 150827 - 150869 11.9 143 71 Op 1 . - CDS 150896 - 152218 1385 ## COG3069 C4-dicarboxylate transporter 144 71 Op 2 . - CDS 152245 - 153663 857 ## COG0044 Dihydroorotase and related cyclic amidohydrolases - Prom 153725 - 153784 7.3 + Prom 153694 - 153753 5.2 145 72 Tu 1 . + CDS 153774 - 154706 297 ## COG0583 Transcriptional regulator + Term 154856 - 154899 7.1 + Prom 154789 - 154848 4.8 146 73 Op 1 . + CDS 154921 - 156600 1678 ## COG2985 Predicted permease + Term 156622 - 156657 3.1 + Prom 156655 - 156714 3.5 147 73 Op 2 . + CDS 156772 - 158208 1836 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 158308 - 158374 30.0 + TRNA 158286 - 158361 86.5 # Ala GGC 0 0 + TRNA 158403 - 158478 54.1 # Glu TTC 0 0 + TRNA 158508 - 158583 86.5 # Ala GGC 0 0 + TRNA 158618 - 158693 54.1 # Glu TTC 0 0 Predicted protein(s) >gi|301349836|gb|ADCQ01000014.1| GENE 1 334 - 1458 965 374 aa, chain + ## HITS:1 COG:jhp0380 KEGG:ns NR:ns ## COG: jhp0380 COG1408 # Protein_GI_number: 15611448 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Helicobacter pylori J99 # 114 373 110 364 370 145 35.0 1e-34 MFLFWPSLILAVYVVCSGDLPLKIHWFWKLLSAAVIFLISMKYMAYTMNGGTFFEPAVKG AWMLTWEALYGALILAAFLLLLKDICSLGLWLLGTFGVKTGFSFNRFVFIVPIFIVSVAG GFWGMYEGIKVPEVKTETIVFKNLPAQWKGTTIALLSDLHVGPVQRKEWLSEIVKRTNDL NPDIVMITGDFIDGRVQKLLPELEPLKHLKSKYGVYAVPGNHEYYSVYREWMAALPTLGI KVLRNGSDVLTKDGASLVVGGTTDLGASRFGEEPPNVERTFSGTSPEDFRILLAHQPKTG SLTKEKFDLQLSGHTHGGHIFFMYPLLAYFNDGLVSGFYDRGERKVYVTNGSGLWNGFTM RVGVPSEITFITLE >gi|301349836|gb|ADCQ01000014.1| GENE 2 1495 - 2148 498 217 aa, chain - ## HITS:1 COG:PA4006 KEGG:ns NR:ns ## COG: PA4006 COG1057 # Protein_GI_number: 15599201 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Pseudomonas aeruginosa # 2 208 4 210 214 104 34.0 1e-22 MRIGVFGGTFDPVHESHIQMGLDALEQCHLDKVFFVPTRPWQKTARASEEDRAAMLSMAL TSYQDKLVVDRRELERTGASYSIDTLYSFRQEFGPEAPIYFIMGSDQWKNLKTWVLWEKF PLLCNLLIFTRDGELGEDPYEGKFPLISVQDLGSNPTPNGLIVLAQSEPAPYSSTAIRKA LFEEPARSQTIPGLTSDVHQYILSHGLYLPREGGKGI >gi|301349836|gb|ADCQ01000014.1| GENE 3 2145 - 2879 733 244 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860132|gb|EFL83209.1| ## NR: gi|302860132|gb|EFL83209.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 244 1 244 244 415 100.0 1e-114 MRHPKLFSFIAALGLGACVSAFAQTTSPLPGPFPADPTPKPFDYPQGLSTPQFTLEQNPA SVIQFGDFPIVLGVTPLSVVTKAFGGSLHHLPDRTDYLCYSAPIQETPKPKKKAKKKPVE DEVPPPEVIGQNIWFIIGERGEVSEAKAEAVTTEGELCPALPEAFSSVSFGPFRIGVNLK PKEIKKLEIPEPSVAEEDSPWRYWFATNKESHPIHYGFFAVEADPEFGPKKMISTELEFK GASH >gi|301349836|gb|ADCQ01000014.1| GENE 4 2890 - 4167 1466 425 aa, chain - ## HITS:1 COG:NMA0238 KEGG:ns NR:ns ## COG: NMA0238 COG0151 # Protein_GI_number: 15793256 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Neisseria meningitidis Z2491 # 1 425 1 421 423 575 68.0 1e-164 MKILVIGSGGREHALAWRLAQSPRVEKVYVAPGNAGTADTPNLENLAISDLNELADFATS NDIAFTVVGPEAPLAKGVVNIFRDRGLKIFGPTKEAAQLESSKDFAKAFMKRHGIPTAEY ETFTDVEAAHAYVRHKGAPIVIKADGLAAGKGVVVAMTEEDAHEAVDFMLQDNKLGDAGA RIVIEDYLDGEEASFIVMVDGEHVLPMATSQDHKRLLDNDEGPNTGGMGAYSPAPVVTPE IYQMVMDQIIYPTVRGMKEDGIVFTGFLYAGLMISKDASGKPTVKTLEFNCRFGDPETQP IMSRLKSDFSELIEAGIDGSLDKVIAEWDPRCALGVVLASKGYPTAPRKGDVISGVELQG DDTVTFHAGTKFNDKGELVTSGGRVLCVVGLGGDLHQARDKAYKALDKVHFDGMQYRKDI GHRAL >gi|301349836|gb|ADCQ01000014.1| GENE 5 4203 - 4925 1057 240 aa, chain - ## HITS:1 COG:NMA1902 KEGG:ns NR:ns ## COG: NMA1902 COG0217 # Protein_GI_number: 15794787 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 1 239 1 239 242 293 61.0 2e-79 MSGHSKWANIQHRKGRQDAKRSNLWTKVIREIIVAARLGGGDPDMNPRLRLSLLKARAAN VPKDTVKNAILKGTGQLEGANYEEIRYEGYGVGGAALIIDCTTDNRTRTVADVRHILSKN GGNLGTDGSVSFMFKHCGYFLFAPGLKEDDVMEVALDNGADDVVSDEDGSIEVTCDPSAF EALHKAFTDKGWEPEVAEVTWKSESETVLTGDDAERMQRLIDALEDLDDVSEVYTTAVFE >gi|301349836|gb|ADCQ01000014.1| GENE 6 5134 - 6087 772 317 aa, chain - ## HITS:1 COG:PA2877 KEGG:ns NR:ns ## COG: PA2877 COG0583 # Protein_GI_number: 15598073 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 8 303 4 294 297 111 28.0 2e-24 MTARTNDLECWKLFCLVVEKQGLNAAADFADIEPSRLSRVINSLEAELGSPLLVHNRRPL QTTSFGDQAYAMAKALLAQHALMLETLKDDKDRMEGLITLAIPAGIGPLFVTPQLFEFQQ IFPKIEFELITLTSKAEEVFYNHPEKVVHVSIGYGVPGTGDIVSRYSGKMEFIPCCSPNY IKKHGHIVDPSECAVHTGLSYTGGTRTKTQELQNGGVVKQLKWKKSLSFQSLSDLKNACL LGAGIAGDIPLIHCIDELEEGKLVNVLRGWKRPAAGCYLYSTKHFVEYRRVKTFLDWMAE KHREILEQIDNRFGQLA >gi|301349836|gb|ADCQ01000014.1| GENE 7 6302 - 7576 1739 424 aa, chain + ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 424 2 432 432 247 39.0 3e-65 MSWQIISAIALIILAIVAIIKKVETRMTLLLAGFAMCVLAGHPMAAFQSFIKGMVNINLV PPICAAMGFAAAVTFSKCDEHLVVLLASPLKKIGGWLILIATVVTFLINIAIMSAAGTAA TVGATLIPLMIRAGIKPAGAAAAVGGGTMMGLLVNPGCAHDIFIAKLGNSPIMDFVSYAA PYIFGLFLLSAVLSSLIMCFYFKDQKLEAKDLAGFQAEESRAEFKVNPLKAIAPVIPMIL LIISSVWFPKSGLDVVASMIIGVVYIALICLKNPNELIKAFFKGMGQGYGSVIGLIVAAG VFAVGMKEIGLIPAFIDMLKQSNEIARWGASFGPFLLAVLTGSGEAAIWAFNQAVTPSAA SFGMNPEALGLLCAVAGQFGRTASPLAGCIIIVAGIAKVSPFEISKRVGLSMLISLIVAA LVLV >gi|301349836|gb|ADCQ01000014.1| GENE 8 7579 - 8988 1092 469 aa, chain + ## HITS:1 COG:alr5010 KEGG:ns NR:ns ## COG: alr5010 COG0044 # Protein_GI_number: 17232502 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Nostoc sp. PCC 7120 # 4 87 11 101 496 72 40.0 1e-12 MSTFDLLIKGARVVDAKNHRDEITDVGIKGGKIAAVAPNLAPSEASEVMQAQGLLLLPGL IDSHVHLGISACGFKMVAAAGVTTCLDMSGTSDDLARIAKTNGAAINYGTLEAILPGKNV PTNDPSTEEIAAFVNKALANGSYGVKILGGHFPLTPKANERLVRYCQENGVYIAWHAGST ETGSDLSGVKEAVAAANGGFLHLPHINAYCRGCPEKAAALSIVVLQILEANPNIVTESYL SSRNGSNLVCDENGIPKSAVPRKCLANFGFSPDKKGLVNAILSGRLAVMKDGQDQTILIS GKEGADYFLDQNTNVSGSFSGLNPLSSRVLCATAKRGTSQAFTVDALSTDGGCIPRNVTL KAGLELVDLDGLTMLEFVKKACLMPARILNLPTKGHLSVGADADICVADPIAKTPVRVLA GGNTVFENGKIFNGVPTAFTTSKGLSFYSSQGIPVREANPSFEPLNRLN >gi|301349836|gb|ADCQ01000014.1| GENE 9 9011 - 10216 1394 401 aa, chain + ## HITS:1 COG:RSp0955 KEGG:ns NR:ns ## COG: RSp0955 COG3203 # Protein_GI_number: 17549176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 2 371 3 358 368 65 23.0 3e-10 MKKLITLAVLAAAASVASAETKVEVFGFLDQGLTFIHENSNKGMMAPVGQRAPNVLKNGK VARQGATSRYMEGTGNVSTWGIKAREELNSDWSVLVHLEQGFLADDGAEYIKGKAFERES SLGIESKTWGTLKMGRMPAMLTGSGTTGLFNSRVNPFGAGWGNMTGGWKFVGTLASARHD NMINYRSPSFGGLEFHYQYSNGASDENEGTSKTNRYMAAGVTYTQPKYFVALAADWLNVQ SADLKVGGWKLRDAYKVLLGGHYKFEPATVYGTVQYMKNIAYIGGYATKEFAPVTAEQNT SAADGKVGENKGFKALAFSLGTQFNALGGTVKVSAGTAFGKNQNITENNDFYRFNAGLGY VYPLSKRTSVYGIGGFFLQHADWQEKNIKSRELIVGLMHRF >gi|301349836|gb|ADCQ01000014.1| GENE 10 10271 - 11752 1174 493 aa, chain + ## HITS:1 COG:BH3186 KEGG:ns NR:ns ## COG: BH3186 COG0165 # Protein_GI_number: 15615748 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Bacillus halodurans # 38 457 42 454 458 140 26.0 6e-33 MLGFEMTSAGRDKSDAADGLQKHDTNWWLHRINLASLISNLEENLIDRDKAVRIIKAMRS VEDASEKGELPKFNTYIHFEPEILKRAGMDCSVMHVGRSSQDILATVEFGLNKERIAAAV EQIARIQKSLCDLAERESGKVVPAYTNGVQALPESYSHYILAFARAFSRETERFIQCFSR YDVCPMGAGVLNGTAWPLNRKRIADLLGFAAPSENSFDAGQIAGNTLPLELSQIVVSVMT LISEFLADFSAQYHHSYPWVVLDLSGSTYVSSAMPQKRNPGFVNDLRRDCSFVTSEAISW LLRLQNLPTGMPDERDEPLINELSKDVKSVLGRFDRVVNGLRVKEENALKEIASDWTCTQ EIADRFVLKGIDFRTGHGFASSLVTWARAHSKTPETTLYEEVCEIWKDFQKERAEMPFPL SEEEFKAALNPRAIVEGRQTAGSCSAEEVRKLLKTERNHIEDAASFVQRFTESQETFLKT LDQAAKEIGGGND >gi|301349836|gb|ADCQ01000014.1| GENE 11 11745 - 12947 1023 400 aa, chain + ## HITS:1 COG:lin2274 KEGG:ns NR:ns ## COG: lin2274 COG0477 # Protein_GI_number: 16801338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 1 399 1 398 407 196 34.0 1e-49 MTNNSNRWKFLFTACLVNFCTGSIYAWSVFAGPKAEQMSQLNNVLYTAGDLAIVFGLANA VGPLPMIFGGFINDRFGPGWLMTIGGLLIGSGLFLAGSASDLGSLILSYSLLFGLGLGLT YGATINTCVKLFPDRRGFAGGMATAFYGLCSVVLPPIAHLLTTNFGIQKSFEIVGAVCGA VICAGGLLSFIFVGKNSANPTANHAASGLSWREMIATKQFWKMLFFLCCGAVSGMMIISH SAGIAGKQVGLTTAMAATAVSYLALINTLGRVAAGTLSDRLGACQTLILSSVLTALGMAL LLICGEGSVALFFAALTLVGFSFGSFMGIYPGFTAAAFGAKHNSVNYGIMFAGFSFAGVL GPWIIKTLSAGGSFSLAYLVGCGISLLGAVTGYIIKRQDL >gi|301349836|gb|ADCQ01000014.1| GENE 12 13078 - 14352 1638 424 aa, chain + ## HITS:1 COG:MA1313 KEGG:ns NR:ns ## COG: MA1313 COG3875 # Protein_GI_number: 20090175 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 424 54 467 468 248 35.0 1e-65 MKKYVLPYGQGSKEIELDETLVLKEVRTKEFEPMKNIPYEILEAIYHPIGCPPINEIIKP GQKVAFICNDPTRVANSFDFMPVLVNEMNKLGVKDEDMHIVFALGTHRPMTEEEMVEAVG KDVASRLKMYNSLCNEQEDFKYFGTTSRGTPVWINKHLCDVDHVILTGTIVHHYFSGYGG GRKAILPGCAAMETVRVNHSFMLDPAAGLGKTTGNPCYEDQMEGVALFAKGRSLFLFNAI LNAKHQFLKMFAGDYIQAHKEACKFVDEVYGSVIPKEADLVIASCGGYPKDINVYQMQKT MDNAACAVRKGGAVIMVAECVEGSGSAVLEEACRRLGSPQAIKAELEKDFRIGANKAYAV TRLMEKAKYYLVTALDRKMARDMLFSGAYDTIEEALAAAEKEIGKVESVIVMPEGSLTVP RVEE >gi|301349836|gb|ADCQ01000014.1| GENE 13 14399 - 15235 584 278 aa, chain - ## HITS:1 COG:CAC0775 KEGG:ns NR:ns ## COG: CAC0775 COG1606 # Protein_GI_number: 15894062 # Func_class: R General function prediction only # Function: ATP-utilizing enzymes of the PP-loop superfamily # Organism: Clostridium acetobutylicum # 1 243 1 235 271 134 34.0 3e-31 MNNDPRLSRLEKVLAEIAPDKRLAIAFSGGLDSRFLSFAAKYLGYTVKLLTVRGPHISAE ETAEAVQWAQDNGFEMELLDLNPLQMKAVEFNHTDRCYFCKKHLFLELKRRAADLPLCDG TNHSDLSHYRPGLKALSELKIHSPLAEASFSKQDNREVGALIGLDHWDQAARPCMLTRLP YNQKVLASDLTAVGEAETALNRYFAGLNKGEIRFRLRKVSPETFEMHIQREDFERLSREE RADAAHLLASFPLFAAAQWKPMDKLSGYFDQLLEQPAH >gi|301349836|gb|ADCQ01000014.1| GENE 14 15228 - 16157 842 309 aa, chain - ## HITS:1 COG:Cgl2418 KEGG:ns NR:ns ## COG: Cgl2418 COG1641 # Protein_GI_number: 19553668 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 71 298 3 235 394 129 39.0 8e-30 MVSAPPALPLKLSALSDANQMTPHSHDIESLHAHDHCEEHVHHHDHADHDHEDHHHHHHE HHSHGADQKILTIRLHSGIAGDMFLCGLMCMLGMNNEEADSVLNGIFSELKGSVHLEDKF VGGIRGSFCRVELPHEHEHRRLSDVRAIIEKARMSNKAKELALKTFGFVAEAEGKVHGMT PEEVTFHEVGALDSILDICFNCELFTRLNPDRLIVSPLPIADGHIHCAHGVIPSPAPAVQ VLLVGIPVRPFGAEGETVTPTGIALLKAFGAEFGPWPQMVIEKIETVYGTYVYEGVPNGA TFALGKSFE >gi|301349836|gb|ADCQ01000014.1| GENE 15 16102 - 16764 343 220 aa, chain - ## HITS:1 COG:AF1275 KEGG:ns NR:ns ## COG: AF1275 COG1691 # Protein_GI_number: 11498874 # Func_class: R General function prediction only # Function: NCAIR mutase (PurE)-related proteins # Organism: Archaeoglobus fulgidus # 3 212 8 216 229 142 42.0 5e-34 MTENRVLFDYDRAARTSVPEAVFCQSKSREVIYSLMEEFSQADAPAILFTRLSEEVFSSC PAEVSRHYSFDSLARIAFCKKLDQEHQGSVAVVSAGTADGFVTWEAARTLEFMNIPCQVF EDCGVAGLWRLENKIEEINRHRIIIAVAGMEAALGSVLAGLTSRPIIGVPTSVGYGVCDG GKTALNSLLACCSPGLSVVNIDNGFGAACTAAKTLSSFGC >gi|301349836|gb|ADCQ01000014.1| GENE 16 16858 - 17853 1015 331 aa, chain - ## HITS:1 COG:MA0367 KEGG:ns NR:ns ## COG: MA0367 COG2768 # Protein_GI_number: 20089264 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 45 331 59 354 355 155 31.0 8e-38 MLKRRQVLLAVGASVSGLSLPALAQTADSSLKGTPIENIKLTHLTVNKNAPVVFYSPSVS PQAVLDIFKAVGLPVQGKVGLKVVFGNQRDRAKMIDPALLKPIADELHATLIESNYMDSA RSNAAAHLATAKSLGYDKVAPIDILDAEKEIAIPVHNSYHLKNFITGSHLADYDTLVSIV RFKGHNLQRYSGATKNLSICLGTARGACQVHSAGEVTDYYHPSSPKETSESMADAVSAAL DYKKGRWVFINIINALKPVDGCSGTADRPDLGIVASTDPIAADRAALDIVYGLTSDPELR KEWEREHSVDVLDYAERKGLGSKVYRLQKID >gi|301349836|gb|ADCQ01000014.1| GENE 17 18427 - 19788 1818 453 aa, chain + ## HITS:1 COG:ECs5105 KEGG:ns NR:ns ## COG: ECs5105 COG2704 # Protein_GI_number: 15834359 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 48 453 42 446 446 475 64.0 1e-133 MSIYFWFQFALLIAFLFISAPRGGMFLGLFSGIGLIVIMFGPKPWLGLPPGKPPVDVILT IIAVVAAGSTLQASGGLDCMLQIAEKILRKRPKVVTFLAPLCTFTLTILCGTGHTVYTLL PIIYDVAIKTGIRPERPMAASSIAAQMGVICSPVSVACVSMVALIAGHPMANGTEVGLVE LCSLTIPAGLIGLLVMATYSNFRGKDLDKDPQFQALIADPEAKRYVYGDSMTLLGKKLPS RQWTAMWIFLAVVLVVALLGAFSELRPMVGKKPLSMTLVIQIFMLCAGALICMITKTPPK SVGGTSVFRSGMVAVVCVFGVAWLSDTIFKAHLNELKEVLVEYVKLYPWAYAVVLLLVSK LVNSQAAAIAIVVPVAISIGTPTGVVVGCCSACYGYYIIPTYPSDLASIEFDRSGTTHIG KFVINHSFILPGLIGVITATICGYFMAIARGWI >gi|301349836|gb|ADCQ01000014.1| GENE 18 19951 - 20211 315 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860148|gb|EFL83225.1| ## NR: gi|302860148|gb|EFL83225.1| NapD protein [Burkholderiales bacterium 1_1_47] # 1 86 1 86 86 158 100.0 9e-38 MNYSGVLVSAFPGRYDEMLRELDTIEGVEVHQQDPDHNRCIIVIEAPDVTAEVDLFKAVS TLSGVADAALVVHNFEDDAVVCSSNT >gi|301349836|gb|ADCQ01000014.1| GENE 19 20248 - 23013 3153 921 aa, chain + ## HITS:1 COG:Cj0780 KEGG:ns NR:ns ## COG: Cj0780 COG0243 # Protein_GI_number: 15792118 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 8 920 1 924 924 998 54.0 0 MTINNPQVKRRDLLKAGVAASAAMTVGIPLSEVAKAAIQSSEGAIVWTKGVCRFCGTGCG LQVGVKDGRVVATKGDPDAPVNKGLNCIKGYFNAKILYGKDRLTQPLMRRTNGKFDKNGK FEAVTWDEALTEMANQFKRVYKEKGPTGVAILGSGQYTIPEAYAASKLVKAGWRSNNIDP NARLCMASAVVGFYQVFGIDEPANNYSDIEKCNTMVLWGNNMAEAHPVLWSRVADRKLTH KETKIINLTTYKNMSSNMADETIIFAPNGDLAILNYILREIVHRDAIDHDFVNKHCIFAA GGMDIGYGMRPTDKFAFPKEKDIQAKQNAIILSKEEAIAQSRPELAGKEVKQTQQGGKAG AHWSISFEDFKKGVEPYTLDFTAQIAKGDPDESLEDFKKKLKNLADIYIDKKNDILSFWC MGFNQHQRGVWVNELIYSVHLLLAKHARPGNGAFSLTGQPSACGSAREVGTFCHRLPSDL LVAQKPARVKSEKIWGVPEKTINPKVGRAYMEILRGMEDNSVNFVWTQVVNPFQAAPNSN HWLKAARHPENFVVVADAYPTFSCQYADLILPAAMIFEKWGLYGNAERRTQGWQQMANPP GEARTDLWMMMEFAKRLQVKDCWGEQPVPGLKVDGYTDGKLPSVLDEAEKMGIKPGMTLY DVLFARPDNLKVAWPDPDLVSKINSTTAPGNLNWFPEKALFNEYRKFTLGDGHDLADFTT YMNSETRGLIWPVVNGKETLYRFNQDYDPYVKEGGYAFYGKLFKAIPTGNLFGVTDPKPV PLPNKAKIFFRPYAAPVEQPDKEYDLWLCTGRILEHWHTGSMTMRVPELERAQANSFLYM NPKDAEKRGLKNGDVAVCESRRGQVKAIVQTNQRNFMPRGMTWLAFFDRKVQTNQVVIDA TDPISEEPDFKKSAVKVYKAQ >gi|301349836|gb|ADCQ01000014.1| GENE 20 23081 - 23812 485 243 aa, chain + ## HITS:1 COG:napG KEGG:ns NR:ns ## COG: napG COG1145 # Protein_GI_number: 16130142 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 7 210 25 225 231 204 48.0 2e-52 MKKGLQVAAVGVGAGLIWDLFLQKSAKAQGFVPRPPGALPPDQFETACSKCGLCVEACPY DTLKLARFNDIAAPGTPFFTPRDIPCYMCRDIPCVKACPSGALSHELTDITEAKMGVAAI DHYTCLSWQGLRCEICYRDCPEQNKAIVIVSQPRQISNHAMFVPEIHPDKCTGCGLCVHS CPTDKPSINIVDPDAFLGKIGDHYRLGWKEKLDARAVPDAPMTSKDGKPLPPGGLDFLNS ELP >gi|301349836|gb|ADCQ01000014.1| GENE 21 23812 - 24696 841 294 aa, chain + ## HITS:1 COG:Cj0782 KEGG:ns NR:ns ## COG: Cj0782 COG0348 # Protein_GI_number: 15792120 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Campylobacter jejuni # 24 289 3 259 260 194 41.0 1e-49 MENKKVIRHLDAPRTFGEWLHRYRFTIARRFVQFCILLAFIGTFRFGWKVLGHPILAGDL SSSRIFDTVPLADPFAALQRLVAQYWLSPESMIGAGIILAVYWVVSGRSFCSWVCPMNLV TDFAFWCRKKLGINTNVLSLSSGTRYVLLAIALILSIVTGTAAFEAISPQGILWREIVYG GFLGLLSAVFGIFALDLAVTKRGWCGHLCPLGAFWALWGKIGLTKVKFDNDTCTRCGDCI KVCPEPQVINFKKAAEVGMYASGECTNCGKCVSICPENSLNFGIRPIKDSKKTQ >gi|301349836|gb|ADCQ01000014.1| GENE 22 24705 - 25016 511 103 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0865 NR:ns ## KEGG: CCC13826_0865 # Name: napB # Def: periplasmic nitrate reductase, diheme cytochrome c subunit # Organism: C.concisus # Pathway: not_defined # 1 98 33 138 175 62 33.0 4e-09 MKKLFMLSLAALVFAPVVYAQQPAQSSELAKFAPPMIPHPIAAYIPITPEKNACVMCHIP GEPGMKVAKGSPTPLPPSHVSDGKVNPNRYECLLCHAEVLPQK >gi|301349836|gb|ADCQ01000014.1| GENE 23 25085 - 25729 630 214 aa, chain - ## HITS:1 COG:PA3879 KEGG:ns NR:ns ## COG: PA3879 COG2197 # Protein_GI_number: 15599074 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Pseudomonas aeruginosa # 7 210 14 215 219 193 51.0 2e-49 MASEHDIIVVDDHPLFRRGVIQLLKMDPSFNVVAEAGDFEAAMVAVRERDPDIVLLDLNM KHTSGVEILTAIKTFDPSIRVIMLTVSDSPSDLLQCFQNGADGYLLKDQEPEQILEDIQK AAKGQTVLSASMNQALAECLREESFSKERRVSELTEREKSVLKLIAQGKTNKEIGKALEI SDGTVKVHVKHVLHKLSFRSRVEAAVWAKEQKNL >gi|301349836|gb|ADCQ01000014.1| GENE 24 25729 - 27591 1062 620 aa, chain - ## HITS:1 COG:PA3878 KEGG:ns NR:ns ## COG: PA3878 COG3850 # Protein_GI_number: 15599073 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Pseudomonas aeruginosa # 13 612 30 607 622 228 28.0 2e-59 MNLKKLLVTFSHSLFWQISCFLLVVTAFAFGALFLVLQISEDSTGKGSAINVSGSLRMQS YVLALTVARSSEDTEVVRSKDIKAAIAEFERRLNLPGLTQAIPEESDNELRKSYDLISSD FYSKIKPMAIETIQQPQKIHEFLNTVPKFVSVIDTFVFDLEQDLESKSNFIHAGLIAFML LAFVLYFGVRYFLRHTLFEPLEDLANLASSVRNGDFTKSSTYRKHNEIGTLSESMNFMIR DLSRMYSSLEEQVREKTADLNRQNKALNLLYGLKNVLGAELNRSVLEKALDFCSENLEAL SCAVYLRNDGDKTLRLAARFSHHPIDPEEIRKFFEGQNVSFEKYNFFKKEVLGKDCTLVL VPGAVGTTRLSFAAIFCGEAPVHIDRELLRSIAREFALAINNSEKNVESRRLILFEERST IARELHDSIAQSLSFSRIQITRLDAALKNKSDEAEVRSILDELKLGVITAYQQLRSVLTT FRLKPKSPDLRENILSSLDEFKERSGIDYSVENQIQSFELDAQSHVHLLHILREALTNVE KHSRASAVEVTFKPIGEYSFEMRVSDNGQGFDLKSKKGHYGLEIMHERAKVLGGELHVEP VIPHGTSVVLRFNSQKKAVS >gi|301349836|gb|ADCQ01000014.1| GENE 25 27735 - 29015 1519 426 aa, chain - ## HITS:1 COG:HI0588 KEGG:ns NR:ns ## COG: HI0588 COG0624 # Protein_GI_number: 16272532 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Haemophilus influenzae # 14 413 9 400 411 189 31.0 1e-47 MTTDFQKDSLVFAQKCFDDVRAMSKDTTGVSRQGYSPVETKVLEYFKKIGVELNLEISTD KAGNVWMTVPGKNRELPALVSGSHADSVPQGGNYDGLAGIVAALTVARWMRETGYQPERD YTVLMMRMEESSWFGKCYVGSLGMTGQLTEKDLALKHRSNGKTLAETIKECGFNPEDLTT GEPVVDLAKMAAFIELHIEQGPTLDSSEEYRVGIVTGIRGNLRHKTIRCIGQTAHSGAVD KQFRHDAVLAFAELAYRMDCLWDEWLKAGHDLVFTIGVVHTAPTSAIAIVPGEVTFCSDI RSLSQETLDGFHALFEEEARKIGEKRGVKFEFDGVIKSQPLAIHKELSEHLAKSATEAGL KVKKLPSGAGHDTVIFGNLGIPAAMIFVANQKGSHNPNEAMEITDFIQGAEALWHAVKAF PVEGIR >gi|301349836|gb|ADCQ01000014.1| GENE 26 29302 - 30573 1880 423 aa, chain + ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 423 2 432 432 350 52.0 3e-96 MSITAWIAVLVIIATIYCLIKRYETRLVLFTAGLFLCCISMKPMAALDQFAKSMTNASLI MAICGAMGFAYVVTHTSCDRHLVSLLAAPLKRLGILLIPAATAVTFFVNIAIPSAAGCAA AVGATFIPVMIRAGIRPAAAGAAILMGTYGSILSPGMSHNNFVAGISKMNVMDLISLHTP FSLIMMGIGLVGITIVCLVLRDNKPTAEELAAYSAKEGGAPIEKINFLKALAPLIPLIIL VLGNKYVPALKMGVAQAMVLGAIFTLLVSWCDPQKFSKEFFRGMGNGYGDVMGIIIAAGV FAAGLRSAGLIDAFVTALKASNELARWGGSLGPFVLAVITGSGDAATFAFNEAVTPHAVD FGMQVPNLGSLALISGSLGRTMSPIAGVVILLSGLAMVPPIQLVKRTAVPMIVALITLAL IMV >gi|301349836|gb|ADCQ01000014.1| GENE 27 30770 - 32038 1792 422 aa, chain + ## HITS:1 COG:HI0584 KEGG:ns NR:ns ## COG: HI0584 COG1473 # Protein_GI_number: 16272528 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Haemophilus influenzae # 7 420 7 421 423 495 57.0 1e-140 MTDYTKQLVEQRRELHQWPEEGWTEFWTTNYIVNKLRSWGYEVLLGTKIINPEQVFGRNE KLVQEGIKNALARGVSQSFIDETEGYTGCVALLDTGKEGPTTAFRFDIDCVCVNETDNPE HKPNKEGFRSQHTGFMHACGHDSHISIGLTLAHWIAERKDELKGKFKIVFQPAEEGVRGA SAIAASGIVDDADYFLGSHISFMADSGEIVAAPYGLLCTSKFDVTFKGKPAHAGKEPNAG RNALAAACNAVVQMMGIPRHGGGMTRINVGTLRAGEGRNVIPSSAHMALEVRGETSSIND YMVENVKNIVEGIAKGFDVSYEISQMGVAVDFTNDKELSDMLIEVAKTVPGINNIRPDGN FGGSEDISVLGKRVQAHGGKAAFFICGADRAAGHHQGSFDIDEGAFKQAFDMYVGMAKKL NG >gi|301349836|gb|ADCQ01000014.1| GENE 28 32320 - 33162 1013 280 aa, chain - ## HITS:1 COG:jhp0179 KEGG:ns NR:ns ## COG: jhp0179 COG2009 # Protein_GI_number: 15611249 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Helicobacter pylori J99 # 32 246 18 233 255 148 39.0 1e-35 MADDFKDISHLYKVTPSAKTIIDGEDLVETKQKSKAYAWCDVLQSVTGLILGLFLFCHMG FTSSILLGKDTFWSLVSLTGGYFIDGVDHLWMHSVFVGVIFVLVVIHAILALRKFPNNYK AFRIMRGHYKLLRHTDTTMWWVQFITGVILTALVFPHMLPMLMDPGSIGPYGSGLEVYHS WLWVVFLFLIVTELHGMIGLYRLCMKWCGPSNATRSFLRKLTYVLIVGMIAMGSFTIMGF YNAGEEAAKLDPEAHYVPGWLQTPQTAPYPSWWPDHLKKN >gi|301349836|gb|ADCQ01000014.1| GENE 29 33333 - 33983 785 216 aa, chain - ## HITS:1 COG:RSc2188 KEGG:ns NR:ns ## COG: RSc2188 COG0035 # Protein_GI_number: 17546907 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Ralstonia solanacearum # 1 216 1 215 216 281 63.0 6e-76 MKTDPRFPKLHIVDHPLVQHKLSTMREKKTPSNSFRQLLRELTYLIGYEVTRDLPLETRT IDTPLCKCKGNFIKGKKLVIIPILRAGLGMSEGLLDLMPSARVGHIGLYRGPDHKPVEYL VKLPSKLEGRRVILCDPMLATGNSAVAAVDTLLKRGVKPKDITFVALVSAPEGVETFQKA HPEIELYVASLDEKLDKNAYILPGLGDAGDRVFGTK >gi|301349836|gb|ADCQ01000014.1| GENE 30 34689 - 35216 596 175 aa, chain + ## HITS:1 COG:no KEGG:DaAHT2_0718 NR:ns ## KEGG: DaAHT2_0718 # Name: not_defined # Def: hypothetical protein # Organism: D.alkaliphilus # Pathway: not_defined # 13 162 15 164 186 66 27.0 3e-10 MRYIVLLLVLLVGAGFVFINWPAVNAPAEVNLLITTAKAPITLMLLFWFSLLFVIVIYIL FVQQTGSFATMRRLTKELQEQRKLATDQEASRLTDVKADFEKKWQVWMEEQKQILSQTEQ RLTERQNKILEAFKGAEDQIAAANKELNTSISGTLDTMDDKITKILIANKNPDQQ >gi|301349836|gb|ADCQ01000014.1| GENE 31 35276 - 36262 1056 328 aa, chain - ## HITS:1 COG:PA5110 KEGG:ns NR:ns ## COG: PA5110 COG0158 # Protein_GI_number: 15600303 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Pseudomonas aeruginosa # 3 327 4 334 336 425 61.0 1e-119 MAINLQQFLAKQLSDGVIDQQLCDLLNAVADLSKEINDKVTHGALAGVLGFAGTDNVQGE HQKKLDVITNEIFVEGVEWTGALAGIASEEMDHCLPTPAAYKRGKYLIMFDPLDGSSNID INAPIGTIFSITKAPEGKIADESFLTPGRKQIAAGYVMYSPQTILTLTVGNGVFMFTLNL GTGEYILTKENIRIPVQTQEFAINMSNMRHWEAPVQKYVQELLAGDTGPLGKNFNMRWVA AMVAEVHRVLCRGGIFMYPRDNRDPSKPGKLRLMYEANPMSFLIEQAGGKATNGYQNILD LQPEKLHQRVAVFLGSAEEVERVTSYHE >gi|301349836|gb|ADCQ01000014.1| GENE 32 36314 - 39022 2861 902 aa, chain - ## HITS:1 COG:RSc2125 KEGG:ns NR:ns ## COG: RSc2125 COG0308 # Protein_GI_number: 17546844 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Ralstonia solanacearum # 11 898 1 904 905 794 47.0 0 MVEFKKANIKMASQNASNIVFRKDYTAPDHQIESIDLSFDLIPTCTEVTSKIIAVPQEDR KSDDLILDGDDLTLVSIKIAGEDSFPGQYDMRPGKLIIHNIKERTEIEIVTRINPRNNLE LSGLYMSKNNYITQCESEGFRRITYFPDRPDILAKYRVVIRAPKDYKDLLSNGNLVEQGE LLDGRNYAIWEDPFPKPSYLFALVAGNFVAQEQKVTLSDGREALLQIWTEPANKGKTEFA MQSLVKAIKWDEERFGLDLDLDRFMIVATDDFNFGAMENKGLNIFNSKYVLADENVATDQ DFANIEAVIGHEYFHNWTGDRVTCRDWFQLSLKEGLTVFREQEFSADMLGDESSRAVKRI DDVRVLRNSQFPEDAGPMAHPIRPESYRSINNFYTTTVYEKGAEVVRMYQTLFGKDGFRR GLLEYINRYDGTAATCDDFLNAMAESNYEDLSQFELWYSQAGTPRISVETKWDEIAKTFT LTLRQNNRTFPGKPAPKPLMIPVKIGILDDAGNDIPLQLEGEDSPDGTSRLLILDEAVQS WTFRNVSTKPLLSIGRGFSAPVIFNTEYTREQLAFLARHDSDLFNRADAFEKLTLQMVDQ FITDLSRRGAQNAMPSESYLFAFEDILNDDSLSPAYRAKVLEMPSENYIAENRVLIEPAL IREACDLIKRRIGQRLRGSFEDKIKNNQTPGLYRPDAADAGRRALKLLSLSYLAYAQDAK AMQQVRNLYKNANNLTDRLGAVNIAVQASLPIGEELLSKADVEWKSEPLLNNKWLALSTQ LRTQRGKRPTVDLIRALTQHPKYQDHNPNSIYALLGTFFRTGGPEFHRPDGMGYQLWVDS VLFVDKFNPQVAARLARALENWRRYEPTLSNLMYKALKYVSEEKNLSPNVREIIEHALTE PV >gi|301349836|gb|ADCQ01000014.1| GENE 33 39179 - 40609 1952 476 aa, chain + ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 2 460 20 475 489 435 48.0 1e-122 MCTTFIVGDKATVDGSFLVARSADSSALKAQLFIIHPACYYPEGAMYRTKDHNGATDFSY PQPVHAMRYTSVPNWQTKLHGAVGFNEAGLGVTGTESIFARDDALAIDPYNKETGITEDD IIDIILPRCHTAAEGVELLGKIIETHGAGEGFGVAFVDDNEIWYLETGTGHQWMAQRIPE DVYFGSGNQGRLRLYDPNASEFKGSPDLIDFAIRHGFYDPQKGPFDFAAAYTRNDDRDRV YNDPRVWQIQKLFNPSVIQPVEDGREFGVFMKPERKLSLEDAKRVMRDHFDASEHDPYSH GLNGNEPWRPVSVFRTYEAHVMQVRPWLPRAIGDVIYIAFGMADLSCFMPFYQGLEQVPG HYGIGTCQADSASVYWKFRKLQTLVMTDYPTYAPIVKKAFGDQERAMTAKQEQMEKQYVE LIKSDKKAATALLQKTNLELLAECEALAEDLTNQIFTLATENIQKANFFANRSKKD >gi|301349836|gb|ADCQ01000014.1| GENE 34 40705 - 41439 933 244 aa, chain - ## HITS:1 COG:ECs3091 KEGG:ns NR:ns ## COG: ECs3091 COG3005 # Protein_GI_number: 15832345 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 45 213 29 188 200 79 33.0 6e-15 MNVRAALHRLYLILKSNNMLSNFTLESEKREYKMSQTGKWGTFWILVIGIVVGILCTAGL VGVVQWAGTDKFCTGWCHSMDGVTYAWKQGQHARTPSGYTAGCSDCHLLNETNRPLTPVA YVELLFAKAKAGSISGFGELRGTLNTPQMWLEKRPELSKAVNDWMVSYNFRNCRGCHNLA DMYNAKNPMVAKMHAGFIDKPTNCIMCHKTAGHNYKMADEIIKATGKWPDPAKAWEQADA AAKK >gi|301349836|gb|ADCQ01000014.1| GENE 35 41587 - 42339 890 250 aa, chain - ## HITS:1 COG:PA0487 KEGG:ns NR:ns ## COG: PA0487 COG2005 # Protein_GI_number: 15595684 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Pseudomonas aeruginosa # 9 232 7 230 252 90 34.0 4e-18 MALNISDALSQNVVDKRIDVLQRIKQYGSISEAARSAGISYKAAWQAIETLSALAGEPLV EKTVGGNSGGGARITEAGEAVLEASAALNKVRNQILTDIQGGESPKLAALASVALRMSIR NIIPCVIEDIHGGMSMCKVKMKVCEGQYLRSSVTLESRQLLDLKEGKSVLALFKASAATV SKEKPDDSSRCFLFGQVSRLPQKEKGGEVTLRLPNGLNVVGFIRGNHGLQIGSEAYIQIP EQSVVIALLG >gi|301349836|gb|ADCQ01000014.1| GENE 36 42445 - 43194 941 249 aa, chain + ## HITS:1 COG:PA1863 KEGG:ns NR:ns ## COG: PA1863 COG0725 # Protein_GI_number: 15597060 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Pseudomonas aeruginosa # 23 246 25 249 251 204 47.0 1e-52 MKKTMIALATLLTFSASGVSAAEINVAVAANFTAPIKEISAIYEKESGNKILASFGATGA FYAQIKNGAPYQVLFAADAKTPKKIVDEGLGIDAKPYAFGKLVLWSSADNFIKQDPNFIL SDAVKKIAVANPKLAPYGEAAYQTMEKWGNLKKVEPKFVTGDNIGKTFQYAKTANAQVGF VALSQVYKNGKFTSGSGWIIPADCYKPIRQDSVILNPGKDNKAVADFMKFMATSPKVQKV IDSYGYSTK >gi|301349836|gb|ADCQ01000014.1| GENE 37 43213 - 43893 778 226 aa, chain + ## HITS:1 COG:PA1862 KEGG:ns NR:ns ## COG: PA1862 COG4149 # Protein_GI_number: 15597059 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Pseudomonas aeruginosa # 4 214 7 217 228 252 66.0 5e-67 MFTAEELLPIKLTLELALITTVFLLLVATPLAWWLSHTKSKWRAPISSIVTLPLVLPPSV LGFYLLVAMGPSGPLGKLTEALGIGLLTFTFPGLVIGSIVYSMPFAVQPLQAAFESIGKR PLEVAATLGAKPLDAFFNVVLPLAKPGFVTAALLTFAHTIGEFGVVLMIGGNVPGKTQVV STEIYSYVEAMEYGKAHWLAGGMVVFSFFVLLGLTLLNRHNERVMP >gi|301349836|gb|ADCQ01000014.1| GENE 38 43915 - 45003 780 362 aa, chain + ## HITS:1 COG:PA1861 KEGG:ns NR:ns ## COG: PA1861 COG4148 # Protein_GI_number: 15597058 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, ATPase component # Organism: Pseudomonas aeruginosa # 17 361 14 361 361 278 41.0 1e-74 MSDSLSSASLLLPREDGFRLECSFEFPNFGITVLFGASGSGKTTVLRCIAGLERAKGFVK VDGVYWQNDEQKLFLPTWERPLGYVFQEASLFPHLTAKQNIEFAVKRSKSTDARSRMEEA IDLLGIRGLLGRKPAQLSGGERQRVAIASAVATEPKIMLFDEPLAALDFKRKSEIMPWLE KLKTNLKIPMLYVTHSAEEVLHLADNLIVMEDGRIKTSGALTDVLANIDLPIKIGEDTGV LLKGKIVSKDKEWSLMTVDCGNIALHIGDNGQPIGSPASLRILAREVVFAKEQPSGLSVQ NAFEGVVEEISVQKDSSGALIRANCSGQIIVGKLTRKALSELDIKEGSQIWLLIKSVALL SV >gi|301349836|gb|ADCQ01000014.1| GENE 39 45000 - 45857 804 285 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860169|gb|EFL83246.1| ## NR: gi|302860169|gb|EFL83246.1| peptidase, M23 family [Burkholderiales bacterium 1_1_47] # 1 285 1 285 285 495 100.0 1e-138 MEPKFEGDSNHYNFPSEPSLGGNQKQRDIPKIVPADLKKLPEDFKLPTASVRPGEPAPAA QPPQERPKDPKALMASLSKDISELSAPLKKEETPKETKSETKPAPDPIEKFGVKGSDGVI LPPEDDLGDPTDPSRTPGIVRSIMLFICLCFVILAAWQVTLFLQPEILKKEPLNTLSQQS CDYLYCPPLRTPVVLSNQVNAISPGQWELKLQIQNQDMRSQKLPVIQLTLEGAGNSRIQK IFEPAEYKTDPKVGLITGGGTANITIPFSFDDGRPTSYKVKVLED >gi|301349836|gb|ADCQ01000014.1| GENE 40 45875 - 46774 689 299 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|56476248|ref|YP_157837.1| ribosomal protein L11 methyltransferase [Aromatoleum aromaticum EbN1] # 1 296 1 292 301 270 50 4e-71 MLFEYSLLTDKKEVEPLTDFLMDKGAYSVSIEDADAETEREKPIFGEPGIEIDDFAWDSS RLKVLCGDDFDMEGALEAALKEQGLKKPVLEGRTEVPDNDWVRITQAQFTPTQIAGDLWI VPSWHEPPNPDAINIRLDPGVAFGTGTHPTTRLCLEWLHDHNLEGKSVLDYGCGSGILAV AAKKLGASKVLGTDIDPQAIEAADYNAEVNRADASFYLPKDMPDEKFDVVVANILSNPLR LLAPALLARVKKGGYLVLSGILERQAEELIEVYGSYRPDSPLSVWKSMDGWICLAGQIH >gi|301349836|gb|ADCQ01000014.1| GENE 41 46786 - 48144 1599 452 aa, chain - ## HITS:1 COG:RSc2787 KEGG:ns NR:ns ## COG: RSc2787 COG0439 # Protein_GI_number: 17547506 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Ralstonia solanacearum # 1 451 1 451 456 729 78.0 0 MFGKILIANRGEIALRIQRACKEMGIKTVVAHSLADTDAKYVRLADESVCIGPAPVHQSY LNMPALISAAEVTDAEAIHPGYGFLSENADFAERVESSGFVFIGPRPETIRLMGDKVSAK QAMIDAGVPCVPGSGGALPDDPSEIIKIARSVGYPVIIKASGGGGGRGMKVVHTEAALIN AVNTTKQEAKAAFGNDTVYLEKFLENPRHIEIQVLADNFRNAIWLGERDCSMQRRNQKVI EESPAIGIPRRAIEKIGERCAEGCRKIGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVT EFVTGVDLVQEQIRIATGEKLRYRQRDIQIKGHAIECRINAEDPYRFIPSPGRITTLHQP GGPGVRVDSHVYPGYFIPPHYDSMIGKLITYGDTRDQAIARMRTALSETVIEGISTNIPL HREMMIDQKFLQGGVSIHYLEEKLAHRESVKK >gi|301349836|gb|ADCQ01000014.1| GENE 42 48158 - 48625 715 155 aa, chain - ## HITS:1 COG:NMA0597 KEGG:ns NR:ns ## COG: NMA0597 COG0511 # Protein_GI_number: 15793587 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Neisseria meningitidis Z2491 # 1 154 1 150 151 135 64.0 3e-32 MDLRKLKTLIDLVQASGIAEIEINEEGDHVRIVNRPAQAAQAAPAIIEIPQATPAPAAPA PSAAPAAPSAAPASNSPSGTQVTSPMVGTFYRAPSPGADPFVEVGTQVKKGDTLCIIEAM KLLNEIEAEVSGTVKEILVDNGSPVEFGQPLFVIE >gi|301349836|gb|ADCQ01000014.1| GENE 43 48659 - 49093 382 144 aa, chain - ## HITS:1 COG:RSc2785 KEGG:ns NR:ns ## COG: RSc2785 COG0757 # Protein_GI_number: 17547504 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Ralstonia solanacearum # 4 142 13 151 156 169 59.0 2e-42 MKKLLLINGPNLNLLGTREPDKYGTTTLAEIETDLRAFVESTGGTLTTYQSNHEGDLVDR IQQAAKEGIEAVIINPGAYTHTSIAIRDAFLSVQIPFIEVHLSNIFKREEFRHHSYLSDI AEGCIIGLGVHGYFSAAAYFLTAE >gi|301349836|gb|ADCQ01000014.1| GENE 44 49275 - 49916 615 213 aa, chain - ## HITS:1 COG:no KEGG:Ajs_3641 NR:ns ## KEGG: Ajs_3641 # Name: not_defined # Def: hypothetical protein # Organism: Acidovorax_JS42 # Pathway: not_defined # 1 145 1 144 203 85 35.0 1e-15 MRNKDTRGLAAEAAAIIAEGVPDWSEARRKLAEEYEITSGAQLPDDDAIESALREHYAIF DPNGHAERLLELRKAALIVMREVSDCKPLLIRGVLNGCADKYSDIYIAVECDDAKSLEIV LIDREIEIEVFPNERPGKNEPVEEIVFEAPVIRGGYFDRQHLTVWVRLKVFEDHAKIKNL IKKNPDPWQIEEETAKTANIEQLERLISLTEPE >gi|301349836|gb|ADCQ01000014.1| GENE 45 49993 - 51351 1246 452 aa, chain + ## HITS:1 COG:RSc2782 KEGG:ns NR:ns ## COG: RSc2782 COG0773 # Protein_GI_number: 17547501 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Ralstonia solanacearum # 1 452 1 459 461 576 63.0 1e-164 MHIHILGICGTFMGGIAQLAKSLGIEVSGCDAGVYPPMSDQLKQAGIHLIEGYDPEQLDA GADLYIIGNAISRGNPLLEEILNRGLPYTSGPQWLQENILNGRHVLAVAGTHGKTTTTSM LAWILEDCGLNPSFLIGGVPQNFGHSARLTESEYFVIEADEYDTAFFDKRSKFVHYSPRT VILNNLEYDHADIFPNLEAIERQFHHLVRTIPSHGKVIFNEASEALHRVLKMGLWTPAES FGTSPVCDWRLVEHEGARLFAGGKEVGRFELSLPGEHNLLNASAAVAAAVNAGVSAERAV DALSRFEGVKRRMEVKGEVAGTKVIDDFAHHPTAIEETIKAVRSKYQTGRLLAVLEPRSN TMKLGTMKAQLPGSLVQADKVFCYQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQ AEQGDTILVMSNGGFGGVHKKLLDGLKSKFGA >gi|301349836|gb|ADCQ01000014.1| GENE 46 51356 - 51928 617 190 aa, chain + ## HITS:1 COG:RSc2781 KEGG:ns NR:ns ## COG: RSc2781 COG3150 # Protein_GI_number: 17547500 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Ralstonia solanacearum # 5 187 6 191 210 87 33.0 1e-17 MRPTLYLHGFLSHPNSAKPKLLKEAHEKIGKPFIAPELYMSPDEVAEFLSKLIKEDLKGG PVDVIGSSLGGFYAAWAKEHLPVEKAVLLNPALGNWGQVDFQPGWHKVSGLDREMYVCPE FMVQLEKMLVKDLKKPQDYLSLISLKDEVLDPQQTLDFLKDTKIVKIPDGDHRITDFAPH VEEIMSFIAE >gi|301349836|gb|ADCQ01000014.1| GENE 47 52085 - 54079 1685 664 aa, chain + ## HITS:1 COG:RSc2779 KEGG:ns NR:ns ## COG: RSc2779 COG0557 # Protein_GI_number: 17547498 # Func_class: K Transcription # Function: Exoribonuclease R # Organism: Ralstonia solanacearum # 1 623 1 635 693 527 44.0 1e-149 MNLFFEEDGAFKVGTEMSGTDSACQVELPTGKRIKVKRSHIFVTYNSPSPAEFLARAQQE SEEIDLEILWEFAPDDEFDFKTIAAEYFGDSITPIQQAATILRLHSNPVYFYRKGRGKYR KAPAETLKLALAAIERKKKLEEQKDAYVQMLIEEHKVPAEIANKAIELLVRPDKNSIEWK ALNEASDKLSCMPLRLLLDVGAIPNAWRWHVESFFMINFPKGKNFPENLSKPHREAHDEL PLSDAVAFSIDDSETTEIDDALSVTPLEDGKTRVGIHISAPGLGIEPGSDIDLVARERMS TVYAPGLKTTMLPKDWVAAFSLDEGLICPVVSLYAVVDNETLAVLSTDTRLERIKIEKNL RYDLIADKVTEEAIQEGNLPVPYGPELIWLWKFAKKLLKDREEVRGRPEPVGRIDWYFSL KGEDENAEIELKGRRRGDPLDLLVAEMMIFANSTWGGWLEERDVAGIYRSQRMGRVKMTS VPGPHDGIGVPYYAWSTSPLRRYVDMVNQRQIIATLKGEKAPYRNNDSELFSIISTFDSN YSAFNDFQSRMDRYWSMRWIEQEGINELKATVVKGDLVRIEGLPMAQRVPGLPELPRGQS VLMKVLNLDYLSLVMECSLIKVLNESHEEDLEEEEIEVEVGTPEAVPPEEPQIEGVEPGN EGLP >gi|301349836|gb|ADCQ01000014.1| GENE 48 54158 - 54985 972 275 aa, chain + ## HITS:1 COG:RSc2777 KEGG:ns NR:ns ## COG: RSc2777 COG0169 # Protein_GI_number: 17547496 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Ralstonia solanacearum # 4 274 18 297 306 226 43.0 4e-59 MKQVTKLGVMGNPIGHSLSPEIHLMFAKQFGDEISYDKVEIPLGEFESAIGEMIDEGYHG LNVTIPFKLDAFRCSTKCSSQARQSRAVNTLTFQNNKILGENTDGTGFIRDLEERLKFFV EHKKILILGAGGGVRGILPALMERMPKSVTVANRSVARAQELCDEFGIQSILYDETGSES YDLIVNATPTSLQNKAPLVSPFAFDGCELAYDLVYAAKPTPFMELAKQGGARHASDGLGM LVEQAADSYEIWMGHRPGTQDVYAKLRETLDKSAK >gi|301349836|gb|ADCQ01000014.1| GENE 49 55010 - 56467 1634 485 aa, chain + ## HITS:1 COG:NMB1999 KEGG:ns NR:ns ## COG: NMB1999 COG2239 # Protein_GI_number: 15677827 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Neisseria meningitidis MC58 # 57 481 60 480 484 462 57.0 1e-130 MSANNPSSQLHDPDYDVAVRDPEAAARGLALVQQLLDEGEDAADRKDLKVGEEIKKELRD TLSELHPADIAYILEALPLDERLIVWDCVRSGRDGEILVEVNEGVRETLIDAMNRDELVD AVESLDTDEIADLVEDLPPDVVAEVQEGLSHEERAQLRAAMSYPEDTVGARMDFEIVSIR QEVTLDIVLRYLRRLKKLPDHTDQVFVIDREERLMGTLPVDRILTHYPEDAVKDVMLTEV LRLSPLEDVSDAAQAFERYDLVSAPVVDEAGRLVGRLTVNEVVDVIREESDEEAYGAVGL DDDQDIFDSVWSSAKARWVWLGVNLFTAFFASRVISAFDGTIEKVVALAALMPIVAGIAG NSGNQTLTLLVRSLATGQITEANQSDVVKKEVLVALVNGFIWGIIAGLFTWGLYYDSPDG MKLGFTMFLAMMLNMLMGAIVAILVPITLKKLGRDPAMGGSVLLTFITDSGGFLIFLGLA TYIFG >gi|301349836|gb|ADCQ01000014.1| GENE 50 56493 - 57686 688 397 aa, chain + ## HITS:1 COG:no KEGG:ECSE_1042 NR:ns ## KEGG: ECSE_1042 # Name: not_defined # Def: phosphoanhydride phosphorylase # Organism: E.coli_SE11 # Pathway: gamma-Hexachlorocyclohexane degradation [PATH:ecy00361]; Inositol phosphate metabolism [PATH:ecy00562]; Riboflavin metabolism [PATH:ecy00740] # 25 331 16 360 432 153 33.0 9e-36 MKAKICGSLCLLSAAVLLSNAHAETPSDVLQAIPHTEELLNVVVVSRHGVRSPTQSAEKL HGWSDKKWSAWPVAPGLLTSRGFYLVKATWKLNRSRAPFTYGVCPKPEDVQIIADVDERT RKTAEALNEGLYPTCGYKVKVTSSEHSAIFSPLKAKVCRIDYPKELEEKLTQKVVGINEK FAAQMAEISKLTGHEFTGPMRAKVSKYKVGFKGAPYDCSSITEIFALEWGQNPEKKVAWD QLDWNGILHLMPIRVSVFSALNRDMEVARYKGSALANKIIESLDHGPKYTYLIGHDTNLA NLGEIFDLNWKLPGRDQNENTPGGYLTFEKWSVNGQPEIRVFYSALSPEQIHAERVTQPT DDFEILPRGTKFDEWKTTYGRRLQSNCIADDKYENRK >gi|301349836|gb|ADCQ01000014.1| GENE 51 57901 - 59394 2226 497 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 19 488 34 476 484 145 29.0 2e-34 MKKLIAVAVLAAFSSLPYAAEKDITTDVVVVGQGAAGTAAAFAAAEQGAKVIGLEKKGMV GGTGNFSEGIFAVGSKMQRDYYIPLTKDEAFKKIMNYGHWRSNARLVRAFVDKSADTVEW MQKHGVKFEKLTTNYPGGLYTWHIYQGRGAGWINALQKKGKDEYGMQVLLNTPAEKLIFG KDGKVAGVVAKDKDGNTLNIHAKAVIIATGGFADNPEMMKKYTRFPNTDGIAQTGKNGVG IQMAWSAGGGKEGLEVQQSYRPGPRAVSTTNHVSATAKQPHLWLTPNGERFCDETIMGDW PAAGNALERIGGQMWVVYDNKNLDSMKHDGIVQGVGVMVPIGAKLTNFEKEWPAAEQAGW AVKANTLDELAKKTGMDPAVLKASVEQYNKAAEQRHDALFAKDPQYIFPVKQGPYYAIKS VASSLGTLGGIKVNDRLQVVTDKDKAIPNLYAAGSDVGGMYGDSYDLLMAGSTIGFAVNS GRIAAESAVKDHNLGKK >gi|301349836|gb|ADCQ01000014.1| GENE 52 59452 - 60567 774 371 aa, chain - ## HITS:1 COG:no KEGG:BDI_1313 NR:ns ## KEGG: BDI_1313 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 8 350 2 331 345 356 51.0 8e-97 MPAEKVEILTDNGTTVKAIAPVIISASRSTDIPAYFPKWFATRFNGGRGYVKWFNPFNQK PVFVSFEKTKVIVFWTKNPKPLIPYLPQLDAAGVHYYFHFTLNDYQQENLEPNVPSLESR IQTFKELASLLGPERIVWRFDPVLFTKTLTPRELATRIFKISKKLKGCTNRLVFSFIDIK VYKKVQRNLLKYSEHFASQYDSTSICEAEPSAEQIEEFTGYLSKIRAYWKERGWNLEICA CAEKFDLSHHGILPSKCIDAELMLKVFGENPELTDYLTKAPARTPFELDHLDLFNANRVE MKKIVTIKKDPGQREECGCVKSKDIGMYNTCLHGCVYCYANTSPESTLKNFERRKNHPLA ESIFIPDFPEA >gi|301349836|gb|ADCQ01000014.1| GENE 53 60748 - 61938 765 396 aa, chain + ## HITS:1 COG:PA3465 KEGG:ns NR:ns ## COG: PA3465 COG0477 # Protein_GI_number: 15598661 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 5 361 33 395 571 106 25.0 6e-23 MTPLIAARRYFWGAYSFSTLGRFVHGMALSWVVWTQTHSPLWLSAIALLSALPSLPLAPV AGSMADRFHRHHILLITQTIGCVIAALTAFLSFFGYLNPYNLAVLALIFGIVTSIDGPSM HSMLVETGETVSQAVARQSLVMNVARSIAPMVAVFIIESFSATWCFAMNAICFIPMIAVM AVVKIPNRTTSEQREESVGVTSRQLFMTYPILREVLPQVACLSILVMPAVALLPAISLKG SELMSFGSMSSGLGFGAVAAAVLMQRNRRIIHHVTTVWTGGWVTCIAFAVLPALETVTSQ WLCALVAGGSLTFALAAANNLVQCKAPDIYRGRFSAMYLAVMLGLVPVGQLILGFASEQF TAVVAVRACAVIAMVLMVLFAFLFSISKAEETVGPD >gi|301349836|gb|ADCQ01000014.1| GENE 54 61935 - 62627 538 230 aa, chain - ## HITS:1 COG:no KEGG:Dacet_2090 NR:ns ## KEGG: Dacet_2090 # Name: not_defined # Def: putative transcriptional regulator, Crp/Fnr family # Organism: D.acetiphilus # Pathway: not_defined # 1 227 1 230 249 75 25.0 1e-12 MRQIFKTHPWVPPKELPETQELFRKYGVPGSIRPGHLLKGKGEPSKLYLITRGAAAYYVA DRYKSHPSVLSLLIPGCSACDLSVITGDRVNVTTRAIGPCEVLIMQPHVLTDLMKNNSEF AAKEAAHVTRKQECSLEAMVANFTLEPAERLRRFLKVLLINYEVPISDTVWNRIPLDLTN EQYGAVVNLTRVSVSRIFSDWISKDLLYKSGRNVYVKAKLFENIYDWWTD >gi|301349836|gb|ADCQ01000014.1| GENE 55 62713 - 63663 820 316 aa, chain + ## HITS:1 COG:RSc0709 KEGG:ns NR:ns ## COG: RSc0709 COG0741 # Protein_GI_number: 17545428 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Ralstonia solanacearum # 116 262 155 300 362 115 44.0 2e-25 MDKRFCQRHHYGMTKNQQFKKQTHRGAFSVLRACKEEPVFKGKKVAASLTLALVVLLGLG SLGSQSALAVSSPKVAADSKGPQTEPPLKVKSLSYSNFEREDLTKPFETEEQVIDRMETN AARFISEHYRVDREDASEIVEQAFISGKNHDVDPLLILAVIATESSFDPKAGSSVGAKGL MQVHAKVHAKRFKEFGGLKAVHEVEAGIEVGTQILKEYLNKTGSLKGALKYYVGAAKHSH DGGYSRKVLSMRNHLRLAASGQVEAAKIQARAPSKFPENYRDGPVFATYGANLARAITEG YKTTQTSGSADGNGSA >gi|301349836|gb|ADCQ01000014.1| GENE 56 63676 - 64386 394 236 aa, chain - ## HITS:1 COG:PA0419 KEGG:ns NR:ns ## COG: PA0419 COG1385 # Protein_GI_number: 15595616 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 19 235 19 239 240 163 42.0 3e-40 MPRFYYFFESADTEAPLVLPPEAVHHAMRVLRMRQGDAVEVFNGKGCAVKGTIRFATDFA EVIPQEVIMQPRGLKLVLMQALVANEKMDWIIEKACELGYAEIAVFPSERGEVRLTCEKA VKRVERWNKIAVSACQQCGENYLPNIRFCSSLKDAAAHAEGLKFVLSPIGKTYDSPDTPT AVTFAVGPEGGLSPKEINTLIESGFYSCKLGNRVLRTETAALAAASFAQTLWGDFR >gi|301349836|gb|ADCQ01000014.1| GENE 57 64567 - 66585 2524 672 aa, chain + ## HITS:1 COG:RSc2750 KEGG:ns NR:ns ## COG: RSc2750 COG0021 # Protein_GI_number: 17547469 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Ralstonia solanacearum # 3 669 10 672 675 868 64.0 0 MSSSVSSKTMANAVRALAMDAVQKANSGHPGMPMGMADIAVALWTKHLRHNPSDPKWLGR DRFLLSNGHGSMLQYALLHLAGYDLTIDDLKNFRQLHSKTPGHPEIGVTPGVETSTGPLG QGIANAVGMALAEKMLAAEFNEEGYDIINNYTYAFLGDGCLMEGISHEVCSLAGVWKLNK LIALYDDNGISIDGKIENWFGENVRERFESYNWNVIGPIDGHDIEAVSEAIEEAKKSDKP TLIDCKTVIGFGSPNRAGTSKAHGSPLGDEELAEAKKALGWEYAPFEIPQEIYDAFDARK AGAEMEEAWLEKYRRYAEAFPAKAAELERRMKGQLPENWDDVILEAIVNAAGEAKTVATR KASQMALNAYAPHLPELLGGSADLTSSNLTNWEGVQAMRPDTYLGRHINYGVREFGMCAI MNGIALYGGFIPYGATFLTFADYGRNALRMAALMKLRSIFVFTHDSIGVGEDGPTHQPIE QTESLRIIPNMDVWRPADACETLTAWACAISRQDGPSSLIFSRQNLPFVERDEINVDDME KGGYIMLEAPNGPSSVEVTLVATGSEVALAAEARKQLLAMNIQTRLISMPSTTVFDRQDK EYRDFVLGEGRPVVAIEAGRTDGWWKYIRGAGTVIGLDRFGESAPASELFKLFGFTVDNV VETVQHVLSQGK >gi|301349836|gb|ADCQ01000014.1| GENE 58 66588 - 67601 1450 337 aa, chain + ## HITS:1 COG:NMB0207 KEGG:ns NR:ns ## COG: NMB0207 COG0057 # Protein_GI_number: 15676134 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Neisseria meningitidis MC58 # 1 334 1 335 343 441 65.0 1e-124 MTIRVAITGYGRIGRNVLRAFYEEKKWPDVKIVAINDTAKPEATVHLTKFDTTHGKFNGD VYWDDGHLVVNGDRIFMCSERDPKKLPWKDLDVDIVLECTGAFRDKEGAMQHIEAGAKKV LISAPGKDVDATVVYGVNQDVLKASDVVVSNASCTTNCMCPFVKPLMDKLGIVDGMMTTI HAFTNDQVLTDVKHKDLRRARAAADNIIPTKTGAAKAVGVVIPELKGKLDGYAMRVPTLN VSVADLTFNAKRPTTVEEVNKIILEASESPELKGILGYNELPLVSSDFNHTSFSSIFDAT LTKVIDGTLVKAVAWYDNEWGFSCRMLDTAVAMYNAK >gi|301349836|gb|ADCQ01000014.1| GENE 59 67665 - 68864 1594 399 aa, chain + ## HITS:1 COG:RSc0571 KEGG:ns NR:ns ## COG: RSc0571 COG0126 # Protein_GI_number: 17545290 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Ralstonia solanacearum # 3 399 20 413 419 437 59.0 1e-122 MKVKTLEELVNEGALEGKRVFIRADMNVPRDAEGNVTDDHRLKESMPAVKMALKGGAGVM VCSHLGRPKEGELTEQDSLAKVAETFGKMLGMPIRFEKDWLNGVDVKPGEVVILENCRGN VGEKKNDPELVKKMAKLCDVYVNDAFGTAHRAQATTDGLAREAEVACAGPLLAKEIKALT KAVAEAKRPLVAIVGGSKVSTKLTILKHLAPLVDTLIVGGGIANTFLLAEGHHIGTSLAE PALVGECKEVMKIMKEKGGHLPLPVDVVVAHHIGYDAGFRICDLDDIEADEMILDIGPKT SKMLAEYLKDAKTIIWNGPVGVFEMDNFKEGTRDLAEKVAEATANGAFTIVGGGDTIAAA KAFKVADKVSYISTGGGAFLEFLEGKTLPAIAALQERTK >gi|301349836|gb|ADCQ01000014.1| GENE 60 69066 - 69593 172 175 aa, chain - ## HITS:1 COG:no KEGG:DVU2808 NR:ns ## KEGG: DVU2808 # Name: not_defined # Def: TonB domain-containing protein # Organism: D.vulgaris # Pathway: not_defined # 72 174 67 169 169 75 41.0 6e-13 MSELSNDTLKIGISLAILCHCFGLMFLTAPAPSEEDFPMTVIVKLDSAQAAVSEQGQSLG MESVSENSLTEKKVADKKREIYLQYLEDVSLCIHARRFLEPNSHGLIGIALYKIRVNADG IFTAADLYKSSGNKQLDRAGLTAVRACSGFVKRPPSTGVQPMNIYQEVRYQYRLR >gi|301349836|gb|ADCQ01000014.1| GENE 61 69590 - 70003 304 137 aa, chain - ## HITS:1 COG:no KEGG:Dvul_0506 NR:ns ## KEGG: Dvul_0506 # Name: not_defined # Def: biopolymer transport protein ExbD/TolR # Organism: D.vulgaris_DP4 # Pathway: not_defined # 12 135 15 138 148 105 43.0 4e-22 MINIRARGEREDSSDLTSLIDVVFILLIFFILAASFAVHSIDFDLPPAKTSKALAGHVVE IRLNKDGSFLCDGIPTKKEELDERLASVIIQFKARPGQIVLMADPQAPAGEMIYLVDAVR QHGGEKLHVATSPRVEK >gi|301349836|gb|ADCQ01000014.1| GENE 62 70040 - 70645 589 201 aa, chain - ## HITS:1 COG:aq_1988 KEGG:ns NR:ns ## COG: aq_1988 COG0811 # Protein_GI_number: 15606982 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Aquifex aeolicus # 1 191 5 200 204 89 33.0 3e-18 MSLIIAGGWVMVPLLLISIIVLALIIDRSLSYIWNPLPDADQQKNILEKIQKGEFAAAET YFSETPWLKNYASALGSSEKMPFYEGVLAENISSLAAMMDKRLPLLATLGRISPLLGLLG TIIGMIQTFAVIAQSRSGIDMELLAEGIWQALITTATGLIIAIPAVFCYRIFLSIESNRL DYLNRVANKAVLYKQSQNNAA >gi|301349836|gb|ADCQ01000014.1| GENE 63 70636 - 72333 520 565 aa, chain - ## HITS:1 COG:BH0366 KEGG:ns NR:ns ## COG: BH0366 COG0523 # Protein_GI_number: 15612929 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Bacillus halodurans # 241 421 1 185 311 110 35.0 1e-23 MLLDCLIPRSLSPETENEGVTLLHNLLMQLHLDRKVARGLGWRGFLPSNKGNFSWSTRLA NSDLVYGIVFMGEEHDDQAIASSFDLYAFPVEDELKTQMPESMQGLYKKDNHIQKIRTLS EHFQELQDFKIGSMGLVFRLDKKGLNLSFHTHKRDARFIGREMRPARALMPLFSALIQSF KTSLNTTPALGVLKSGNLPSVNDFFIEAEFGLPVFEDDEEMDAVYKLSAPPLSYIPDEVD LSDKPLIHVLCGFLGSGKTTFLQNWLNFLHTRERFTGVLQNEFGEIDLDTALIGDETCVE ALNDGCICCSLADSLRPGILRLIQNTPADQLILETTGLANPDNVVHSLEELNDICKIGLV VSVADAPNLTEHPEYLNEKLRLAQLTRADVIVVSKADLVCDESIERLTQSLHDLNSKALI ILSANGDANFAVLDHFFNHWTDKKYGMFTSRKHTPGADTMLLNNAGFSMRGNTSLFETCA VKFSEPLELERIEPIIRNSGKKVLRAKGIVDIVGKGCCEVQYTDGMLSISQARDDLQACD RWLTIIGKGLRPQTGSTTIRKSRCL >gi|301349836|gb|ADCQ01000014.1| GENE 64 72382 - 73530 1331 382 aa, chain - ## HITS:1 COG:no KEGG:Ddes_1722 NR:ns ## KEGG: Ddes_1722 # Name: not_defined # Def: metallo-beta-lactamase family protein # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 1 382 1 382 382 649 76.0 0 MKRRNFVQGLALGAGVGTLGAMGAYSYSPARTAFLPDIKRGTADIGLCKSVKITNISETS WFDNSIFMQDVTASGGLLVDQYTYNWAPFGNGKGPGKGTYEDGMKNIGPYLPKNLEKAWE ITRELSEHADNAGGYSCLVEIEALDGKKTKYLFDCGWNYMWMDQCFKREGIDKMLANGEI AAFISTHEHMDHYFGFPVVAKYGPNVTVYRPSTFYPAGKDYMVRSGHVGKVIDVTKGLHK IQEGVALYQFECPIIFKVYGEMSLYCNVKDVGLVSITGCCHQGIILFADTAYKEIAYEND KFYGLYGGLHISPFDDWDPKYDDLVIGLKKWDLQKVGCNHCTGLITAQKFVDAGYPVVQG TARFRSKTTNYLGNGDTLLFPS >gi|301349836|gb|ADCQ01000014.1| GENE 65 73546 - 74946 1621 466 aa, chain - ## HITS:1 COG:no KEGG:Ddes_1721 NR:ns ## KEGG: Ddes_1721 # Name: not_defined # Def: amino acid transporter, AAT family # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 5 465 6 466 467 677 78.0 0 MTNPLPYLEQRKLVKRWSGPIAPIANLIFTLILFAITWWIFQDPRGVMRFYTPYVGYNYC RWWLIILIWMAYIFDFWPFKRKWLETAHPLQKGLVLALISVAIMIMMIHGFFQSVLGNTA FAYFNPQQLLKLKGLTEFYATEYAAQACMMFAVIASWISPAWVVALEGRPWENLAQPAKG FSIWLGTFCLSFVIYFMTMHNHMGILYYPWQYFTSIAPPYWEEFAQTVSANFHVAWIMCC TVVVWFMEGIWERYPFTMIKTPWLRRLAVFFGIIVISWALCFFFWYMQELTWGEAIRGHR RDAAPDWRWLHVGETAIFFLVPALFLQFYCGNWPRKFSTPVNVLIRSTIVLLGGVAIYCL YYKYGHFFLGTQKGFSHPQQFPMIPMIWLIDIWLINWWFMDGWPGWKLTMRTAEEVEAAE KEVEERAVWRTDMIPGLVCGIAVGIAFYFAVVWVLPICSKLFTLVD >gi|301349836|gb|ADCQ01000014.1| GENE 66 75635 - 76288 196 217 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 17 216 5 196 208 80 29 6e-14 MDFLTLTLELFRNADHFIMYIAQTYGWWVYLVLFMIFYSETGIVICAFLPGDSLLFIAGA AAAAGALNPWLLIVIISLGAILGNTTNFYIGNWLGNKIYDGSISWIDQDALKKTHDFYEK HGGKTIVLARFVPIVRSFAPLVAGAAKMNPLRFELYSGGGAIVWVGGIVLAGYLFGNIPF IKNNLSLILVVGILAALVPFSCALLIQLWRKYIMKQR >gi|301349836|gb|ADCQ01000014.1| GENE 67 76380 - 77030 186 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 16 213 4 200 208 76 27 8e-13 MNFFSAFLEMFRNSDQFIAHMSAEYGIYVYLFLFTVYFLETGIVICALLPGDSLIFVSGA ASAAGILNPLGAFLAIALGACFGNTVAYGIGYFLGSKIYDGSIKWIDQQQMAKTQAFFAK HGKLTIVLARFVPIIRSFAPLVAGAAKMSRLNFEVSGTVGAVLWAGIILAAGHLFGNIPF IKNNLSLILVGGIVLGLAPFVIGYIVKKWRQHPDEK >gi|301349836|gb|ADCQ01000014.1| GENE 68 77201 - 79096 1290 631 aa, chain + ## HITS:1 COG:RSc2563 KEGG:ns NR:ns ## COG: RSc2563 COG0323 # Protein_GI_number: 17547282 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Ralstonia solanacearum # 13 631 9 636 636 530 47.0 1e-150 MEETTLETRRPERKIQELSDQLISQIAAGEVVERPASVVKELVENAIDAGADSVEVRIEG GGIKRIVVSDNGCGIPKDQLALAVKRHATSKVSNLDELESVSSLGFRGEALASIASVSDM KVISRVAGEDAFSIADGEISAASGNKGTRIEVADLFYKTPARRKFLKSEGTEAAHCQTVI ERIALAYPEVAFLFVANGKPIINLPASSIEERLTRLMPRDFRDAHRALDIKAPALRLYGW VCLPTAARSRADCQYFYVNGRFVRDKVLSHGVRMAYQDVLHGSSQPSYCLFLQMDPHKVD VNVHPTKSEVRMRDSQAVHQFIFHAVEDALARTTIVDPSSGEIMDTALPSSPRDASAQAP AEAPVAPTVNPSSFRPAQPKPSRTNTEAYLDFSSPHPKSFQNSFPTTIAAMKVDPATLSA NHATPKPAAEAPKRPQPLGRAVGQVCGTFIIAENSAGMVLVDMHAAHERILYEHLKKSFD ERKMPMQEMLIPLVFTVTPEQMATFEDAREELEQLGLELSAVGPNQLSLRSVPQLMINQI SQAGPTIVREVLDDFRQYGKSTAMTEKRNEVLSRMACHAAVRVNRILTIEEMDAILRQME QTDRADECNHGRPTWVQLSAKELDSFFMRGK >gi|301349836|gb|ADCQ01000014.1| GENE 69 79096 - 80040 739 314 aa, chain + ## HITS:1 COG:VC0346 KEGG:ns NR:ns ## COG: VC0346 COG0324 # Protein_GI_number: 15640373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Vibrio cholerae # 7 299 8 304 315 303 53.0 2e-82 MMSDSQAILLLGPTASGKTALALRLAEEIPSEIISIDSALVYRHMDIGTAKPTKEEMAAV PHHLIDIIEPTESYSAADFAQDCVRLVAEIRNRGKVPLIVGGTMLYAKAVREGLSPLPAT DPAVREKIGAELNEKGLPALYERLRSVDPKTADRLAPADTQRITRALEVFEMTGKPISEL TAQKGEPLLKLSSYALLPPDRAALHARIAERFELMIKNGFLDEVKKLMAMPGMHADLPSM RSVGYRQAWNYLSGLTTFDAFKEAGIAATRQLAKRQMTWMRSMQGTLLLNPDEKVASLAV LKKEAEQILSGLQQ >gi|301349836|gb|ADCQ01000014.1| GENE 70 80052 - 80564 446 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860200|gb|EFL83277.1| ## NR: gi|302860200|gb|EFL83277.1| hypothetical protein HMPREF0189_00354 [Burkholderiales bacterium 1_1_47] # 1 170 31 200 200 312 100.0 5e-84 MFIVLRRKFFAFTSAVAACAAFFCLPAAAADFTCPYFSLPLTGDWAQQRMQPGSVPPNTF ATLFASRKAGEGVLITVIPSDKAPKEAAQIMANNYKQQGMRVIGNPVQIPGQNAYRFAYV SANNKMHAIVFISGNGKHLANVSVLGRHGTGGLALLKGLSSKEDKLFPKF >gi|301349836|gb|ADCQ01000014.1| GENE 71 80664 - 82187 797 507 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 1 453 3 446 456 311 38 1e-83 MESFINTVNGIVWSPALVYLCLGAGLFLSLRGGFLQLRHLKHMWQLLFQPKDNVTGVSSF QALSMTLAGRVGTGNIAGVATAITFGGPGAIFWMWMVAFLGASSAFVESTLGQVYKEKIN GEYRGGPAFYIERGLGVKWFAWLFAIVTIFSCGLFLPGVQANAIATSMENAFGIAPAISA GFIAALLSFIVFGGLKRIAAFTTLVVPFMAQAYVIFSLVIVFMHVDLLDDVLVLIVKSAF GVDAAFGAIIGLAVSWGVKRGIYSNEAGQGTGPHASSAASVSHPAKQGLVQAFSVYVDTL LVCSATAFMILITGSYNVVGPDNAPMFIGLKDVATGPAYTQAAVEGLMPGFGQAFVAIAL FFFAFTTILSYYYISETNVSYINRKLHRPFLFFILKLFVMGSCIFGAVKTADLAWAVGDI GVGLMAWLNIIAILLLNKKAFLCLRDYEKQLAIGLDPVFHPEKLGIKNANYWVGERAEEI RDKERAKLNSGSRQDLEGNVLNVASGN >gi|301349836|gb|ADCQ01000014.1| GENE 72 82416 - 83684 1512 422 aa, chain - ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 37 410 34 412 412 256 40.0 4e-68 MTDPRPVCTEKTQDIIKTLRSNVQVEAALELAVKQQEKRIADQIILTETPAPPFHEEERA KVLLGMFKQYGLTDVKQDAIGNVIGRRKGTGNGPTLVVGAHIDTVFPAGTDCKVHRDGDV YSAPGISDDAAGLASMLQVIRCLNENNIETVGDIVFVGTLGEEGNGDLRGCKALFKEKND YDGMIAIDSANVHRILRGAVGCKRFRIIFEGPGGHSLHKFGIVGSAIHGLSRAIVRVDEL KVPTDPKCTFNFGVIKGGTSVNAIAARAEAELDIRSFNQPALEAFVKTVLETIEAACDEE NMRWGLEGDGMVSLKIEQIGDRPAGMNADDASVIQAAYGSLLSLGISLDKYTLAATDQNV PLFYGLPATTLGAGGTEENNHALSERWNAKDAFQGPQVAFLTALTLVGMKGVSEPILEKV QH >gi|301349836|gb|ADCQ01000014.1| GENE 73 83917 - 85323 1956 468 aa, chain - ## HITS:1 COG:SP1167 KEGG:ns NR:ns ## COG: SP1167 COG0044 # Protein_GI_number: 15901032 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Streptococcus pneumoniae TIGR4 # 4 66 2 64 422 66 49.0 1e-10 MYDLLLKNAWVVDPLNSVNGVADVAIQDSKIAKVQRDITEEAKEVIDFTGKTLQPGIIDS HVHLGEMWGSPFGPRMLAMNGVTTCLDMAGPLENILDNVPKYGVGINMAILQFASPPFTF KDANPSQQEMIDLIDKSLEEGALGVKLLGGHYPLEPEVSSLLIRTALERRAYVAWHAGTT KNGSNINGMIEAVKMADGYPMHLAHINAYCRGAIKDAMEETAIAIDLLKANPNIFCESYV SPKNGTRLTCDKDGKIQSKVTGNCLRAFGFTEDKDGVRAALLAGKAFVVYDAGGYSDLMT GEEALRRWEAADTNVGGSFNINPPLPRIALAQAKRDDGSFVVDAISTDGGCIPRNVILSQ GLSLVKLDILSLSEFAQKTSLNPARMLRLANKGHLSVGADADITVYDYATQMPVASFIEG RKVLFNGELVSKGATVICTEHGKDAIEKRGMKAIVVDPGKQIERITAL >gi|301349836|gb|ADCQ01000014.1| GENE 74 85358 - 86353 660 331 aa, chain - ## HITS:1 COG:STM3598 KEGG:ns NR:ns ## COG: STM3598 COG0252 # Protein_GI_number: 16766884 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Salmonella typhimurium LT2 # 6 331 27 347 347 225 41.0 1e-58 MKKTKIAVIGTGGTIVSSGANATQMTGYSITDADIHTIMTALPELNDIAEIATFSVFNIG SSNIKLSNWLELVCLINKLSKENFDGFVVTHGTDTMGETAFFANLTLKTEKPVVFTGSMK PATAVSADGPLNLLNAVRLAGSPKAAGKGVLVSLNGTIHGARDVVKTNTVAVETFKSPNS GPLGYIIGDQIDFLTESVKPHTLRSCFEVGETDTADEYPRVCALLCCADQNPDLLEAAVD KGFHGIVLSCTGNGSVPLVFEPVLQKAHDVVCVRSSRTGSGPVTEGMTRWQVNGMIPSGT LNPQKARILLQLSLKKFGLDLEKIKEIFKTY >gi|301349836|gb|ADCQ01000014.1| GENE 75 86420 - 87688 1722 422 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 7 421 8 431 432 302 45.0 1e-81 MPITGWIAILVLIVMCYMLIKQYETRMVLFGGGFILCCISLAPMAGLNAFAKTMTNGALI TAICSATGFAYCVTYTECDRSLVHYLTRPIRNVGILMIPITSLLTFAINIAIPSAAGVGA VVGTTLIPLLLRAGFKPAAAAAAVLMGTTGSLLSPGLSHNAYVSDMAHMSIMDLISYHGI YSLMIGVVGAVGLCIVCWVLGDNKGEKMAEANPAADAETSSFKPSPIKAFVPLIPIILML VFTFWIPSVKMGVAPAMLIGTIVCLIVAMCDPQQFSKQFFKGMGDSYGSIMGIIIAAGVL AAGLTASGLIKGLIALMVQSKEIAQWGGSIGPFVLSVLMGSGDAGAMAFNSAVTPHAQEF GMQIHSLGSLAFLAGAAGRTASPIAGITILVAGLAKANPFDVAKRTFLPMVVAVILLAIF MR >gi|301349836|gb|ADCQ01000014.1| GENE 76 87859 - 88830 670 323 aa, chain - ## HITS:1 COG:BMEI0116 KEGG:ns NR:ns ## COG: BMEI0116 COG0583 # Protein_GI_number: 17986400 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Brucella melitensis # 16 314 10 308 308 110 29.0 3e-24 MSKPITESILSNETRVFLMCCDFRSFSAVAHALGITQSAVSKIIRKFEDSIGFELFIRNS RPLTLTPEAHLLHRQLRGLKGEMTRSLSSLQSKNYIKPILRIGILESLHLNLGVAILKNL LPNLSQVVMLTASANVLIQRLIERKLDLIITNDVSTEPSHVFRRLLFHEPSVLILPKSFE KDPNQNWTWQRLAVCGLPLIRYWNESGAGEINEMFMKTHGLRFPDKISVDTNSLLVTLVS QGIGWGFSRPTTVLENIHMHPHFIVREMQKPSFSREVYLIGREQEFVVESEIIANIAKQF VQENIIPESLKFAPWVKEGFTVG >gi|301349836|gb|ADCQ01000014.1| GENE 77 88929 - 89963 1085 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 5 332 12 338 356 422 63 1e-117 MTKPLSYADSGVSIDAGDELVERIKPFAKKTLIPGVLGSIGGFGALFEISKDYKEPVLVT GTDGVGTKLKLAFLLNRHDTVGQDLVGMSVNDILVQGAKSLFFLDYFACGHLDVDVAERV VKGVAHGCELAGCALIGGETAEMPGMYPAGEYDLAGFAVGIVEKSQIIDGSRIKPGDVVL GLASSGPHSNGFSLIRKVVEVSGKPWITKLSDGKTLADAVMEPTRIYVKPVLEAMKSVTI KGMAHITGGGLLENIPRVLPEGTQCVIKAGSWKRPAVFDWLQEEGHIEDHEMYRVFNNGI GMAVIVAAEDAEKAQKALKAAGETVYRIGVIEALPAGEALCVVR >gi|301349836|gb|ADCQ01000014.1| GENE 78 90148 - 90600 524 150 aa, chain - ## HITS:1 COG:RSc2892 KEGG:ns NR:ns ## COG: RSc2892 COG1651 # Protein_GI_number: 17547611 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Ralstonia solanacearum # 6 146 104 244 248 95 37.0 3e-20 MTMTFNESRWPKENAIKVVKGNGVSKLAVFMDPMCVYCKRLSRETLANLMNVTIYCYIWP FLSEESKEIAGCIYSSADKADALVRWMKYDQMPTGMPNEYSEEMIEQNIALADYLGLQGT PAIFLSDGRGPFGAMSAKALAHKIISAEHY >gi|301349836|gb|ADCQ01000014.1| GENE 79 90744 - 91454 654 236 aa, chain + ## HITS:1 COG:RSc2625 KEGG:ns NR:ns ## COG: RSc2625 COG0593 # Protein_GI_number: 17547344 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Ralstonia solanacearum # 20 226 6 229 233 130 34.0 2e-30 MQVNDLVESEKDKKEQIRGQLPLDFFPEKQPTLSNFIVGSNSEAVAVISELKEGRGPQFT YLWGYEGVGKTHLVRALGKQSEGVPAFDENRTIYAVDNVQDLTPEQQQELFVLYNTVREH PGTHLVVTADRSPKDFERQGFRKDLTSRFSWGVVFELSPLSDEQKRQVILEAASQTGLKV APEVLNWIENNFPRDMHTMSNLLHSLDRYAMSAKRAVTIPLIKEWLERNQDTKEDR >gi|301349836|gb|ADCQ01000014.1| GENE 80 91451 - 92143 441 230 aa, chain + ## HITS:1 COG:RSc2626 KEGG:ns NR:ns ## COG: RSc2626 COG0560 # Protein_GI_number: 17547345 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Ralstonia solanacearum # 1 224 1 224 224 145 37.0 7e-35 MKYAFFDLDGTLIPVDSSILWAETLLSHVGKDEKQLRAERIQYDVDYKNGCLDINKFEDF EMKLLARFPRRELDELRVQYLKRDIMPHVLPIAVDLVKKYREAGARVVMITASYRYAVEP IAELFGIRDLICAEPEEKPDGEFTGRWISENFATQKVVNAERFIQKCGGSAADLKESAFF SDSMNDFPLLDHVARHGGKAVATNPDDRLRSTAQERHWEILELFSEHKLF >gi|301349836|gb|ADCQ01000014.1| GENE 81 92172 - 93611 1454 479 aa, chain + ## HITS:1 COG:RSc2627 KEGG:ns NR:ns ## COG: RSc2627 COG0617 # Protein_GI_number: 17547346 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Ralstonia solanacearum # 26 408 57 468 514 328 46.0 2e-89 MVKEEEGFKANVPTKIRKKAHIVPREENGIDLLAVSPFAISVCQKLQDAGYKAFIVGGAV RDLLIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRLVHVNKGAETIEVATFRGFAKQ GVTKDEDGVITNDNVFGEQYEDAARRDFTVNAMYFDPISGDLYDYHHGLDDIRERKIRMI GDPATRYREDPVRILRAIRIAAKLGFTIDEKTAAPMHYMQTLLLSVPSARLADEFSKMVL SGSAVACMELMNRYDINIPIPLFDVLKRTFGLPFVRKGLERCDARVALGKSISTSFLFAV LLWHEMKEEVAKSTGKTPGQIYEEAAKKVADSYRWDGLQSRYVSDMAIIWKLQPRFLVRS RRAAMKLLQHPRFRAAYDFLLLRASSGDASHELADWWTAYEGATDEERLEMSKEAEQQDR KERERLRQERAAEGKSDEDEADGEEKEKKKRRRRRKKRFDRSKFPKAEKAASDKEKADK >gi|301349836|gb|ADCQ01000014.1| GENE 82 93615 - 94166 376 183 aa, chain + ## HITS:1 COG:RSc2628 KEGG:ns NR:ns ## COG: RSc2628 COG0801 # Protein_GI_number: 17547347 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Ralstonia solanacearum # 5 159 4 156 169 118 45.0 5e-27 MLQQAFIGLGANLGEPESTLKEAVLRIADIPGVRFVQVSSLYKTEPIDSSGPDYTNAVLE IKTELSPRALLTQLLAIESDLGRVRPAGVHNAPRTIDLDLLTVGEQRSDDPFVLLPHPRM TERAFVLVPLAEIAPQFNIAGKGQVHVFLAATADQRINRFKSAEEWFGNLGECNGSENGT QAC >gi|301349836|gb|ADCQ01000014.1| GENE 83 94135 - 94947 960 270 aa, chain + ## HITS:1 COG:RSc2630 KEGG:ns NR:ns ## COG: RSc2630 COG0413 # Protein_GI_number: 17547349 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Ralstonia solanacearum # 3 270 6 272 274 289 52.0 5e-78 MDQKTERKPVRLSTIKKMYEAGEPIVMLTCYDATFSSVEDEAGVDIKLIGDSLGMVMQGH ETTLPVTIDDMVYHTACVARGNKYGLVLADMNFGSYLVNEDEAVANAVKLMQAGAHMVKF EGGVEVCPLARRLTAMGIPVCGHVGFTPQSVNAIGGYFVQGKTKSGEEKLLADTLALQEA GASMIVLEMVPADVAKRVTEALSIPTIGIGGGLNCSGQVLVLQDLLGIFPGRKPRFTKNF MEGAASIKEAVANYVKAVKNRKFPAPEHSF >gi|301349836|gb|ADCQ01000014.1| GENE 84 94963 - 95811 872 282 aa, chain + ## HITS:1 COG:RSc2387 KEGG:ns NR:ns ## COG: RSc2387 COG0414 # Protein_GI_number: 17547106 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Ralstonia solanacearum # 1 281 1 283 283 326 58.0 4e-89 MKVVHTIEALQEELKGKKNIALVPTMGNLHEGHLHLMQEAGKYGDTVVASIFVNRLQFGP NEDFDQYPRTLEEDCKKLEEQGVVDYVFAPSEKDMYPQPQTFRVKPDPKLADILEGFYRP GFFEGVCTVVMKLFCIVRPDVAVFGKKDYQQLTIIKEMVRQFGMPIRIIPAELQRNQETG LALSSRNRYLSAQELQDATLLYKTVKGVKDALEAGTADPEVLEERAMKMLDGHGWIPDYV AVVRRSNLLAPTKDDLINKTPLVVLAAAKIGTTRLIDNVEVF >gi|301349836|gb|ADCQ01000014.1| GENE 85 96050 - 96733 167 227 aa, chain + ## HITS:1 COG:CAC3334 KEGG:ns NR:ns ## COG: CAC3334 COG0655 # Protein_GI_number: 15896577 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Clostridium acetobutylicum # 49 226 1 178 178 147 38.0 2e-35 MNRRKMLLSTLGSTLAVNGVSIAAASTPPLFQRESLPQEFSKVISLGKLRILVLSGSPHK DGTTNLLATNFVKGAKEAGHEVRRVNTSFEDINACRGCFFCLKNSGQCLIRDDVPAILHL IEQADVVIFVTPIYYYAIHSSLKALLERFTSRRTDFMKMPKKMGLIAVCGGKFEWSFDSI NAHFDSLSRYLGWKDIGRSEARGYPTKTDIQKTEYPKLAYQFGFNLS >gi|301349836|gb|ADCQ01000014.1| GENE 86 96743 - 97168 262 141 aa, chain + ## HITS:1 COG:SMa0558 KEGG:ns NR:ns ## COG: SMa0558 COG1359 # Protein_GI_number: 16262744 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 9 121 40 159 170 62 30.0 2e-10 MSNWLLRFVFVLFTILAGSAAIAKDLPKEEQMIVRIAEIQVDRSQLEEYLKQARTVGAES VSKEPGVIAIFPMVEKRNPEQIRIVEIYKNEEAYKAHLQTPHFLKYKTSTLSMVKKLDLV DMTPLDEQAMPLIFKKLSAHE >gi|301349836|gb|ADCQ01000014.1| GENE 87 98190 - 98957 1041 255 aa, chain + ## HITS:1 COG:NMB1612 KEGG:ns NR:ns ## COG: NMB1612 COG0834 # Protein_GI_number: 15677462 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Neisseria meningitidis MC58 # 17 249 28 262 268 191 42.0 2e-48 MLMKKLLWTACAAIALTASAGINAEEYVVGTGATYRPFEYETPQKELVGFDVDLMRAIAK AEGFDVKFINTPWEGIFATVDKGDRDIIMSGITITDKRKQVVDFSKPYFLAHQLILTDKS VKINKLSDLSKGSVAVVSGSAGDVAASKAFGKASTRIRRFDNTPLALEELNQGGVVAAIG DIGVLAFYARNNPDKHFNMTRDPAFEEQYFGIAVKKGNQKLIDKINAGLEKVIASGEYNK IYRKWFGTDAPKLPQ >gi|301349836|gb|ADCQ01000014.1| GENE 88 99047 - 99799 921 250 aa, chain + ## HITS:1 COG:NMA1709 KEGG:ns NR:ns ## COG: NMA1709 COG0765 # Protein_GI_number: 15794602 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Neisseria meningitidis Z2491 # 4 242 3 242 248 203 48.0 2e-52 MGGFRYEVITEYWPLFLEGAKMTIQITVICVTLGVILGMALGMARLADARHSPWKQILKY CVRWPVTVYVSFFRGTPLFVQILLMQFAILPFFIHPTEGLLISGDLAREIRSTYGAMLAG IVAITLNAGAYLSEVFRAGIQSLDKGQMEAARSVGMTYWQAMFHIILPQAFRRMLPPLGN NAIAILKDSSLVSAIGLAELAYAARTVAGATARYWEPYITISLMYWVMTLGLAYLVKKME QRLGKGDDNR >gi|301349836|gb|ADCQ01000014.1| GENE 89 99796 - 100569 324 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 1 240 1 237 312 129 33 8e-29 MSDNKTEQKPVIRIENLHKYFGDNQVLRGIDLEVMPGEKVVVLGPSGSGKSTMLRCINAL EETTSGKIYVNDVDITSPKTDINKVREHLGMVFQRFNLWPHKTVLENVALAPKLVSGVNK AEAEKKAMEMLKRVGLAEKANAYPASLSGGQQQRVAIARGLAMGPKALLFDEPTSALDPE LVGEVLKVMTDLAKSGMTMVVVTHEMGFAREVADRVIFMDGGVIVEQGKPEDVLLHPKEE RTRTFLKRVLPASEEQK >gi|301349836|gb|ADCQ01000014.1| GENE 90 100622 - 101518 881 298 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 4 296 12 304 306 145 32.0 9e-35 MQKKTEGICFAISAGICWGSMGVAAQVLMEDSGFAVGDLVAGRLLGAGALLLMFEHFFMR RSLLKYFSQPGVAKDILLYGVLVLLTQLTFFLAIQCSNAGTAAILAATIPVFTTIWDIFV KHRAPQIREMACTALAIIAVVLITTKGDFDSVSLSLTGVLWGLASSVAGAASNIQPNAVL KKIPVTIVVGGGMTVGGIVMSIFFPPWTIEEANWTTLSALFYAYIVVVGTLVSFLLYVSS LKMISATSASLLSCFEPITAVVLSVALLGAPLTPAEGVGGVLVFAAVWLLASRKEAQA >gi|301349836|gb|ADCQ01000014.1| GENE 91 101602 - 102585 378 327 aa, chain + ## HITS:1 COG:ECs4401 KEGG:ns NR:ns ## COG: ECs4401 COG0583 # Protein_GI_number: 15833655 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 6 272 27 290 323 70 24.0 4e-12 MRPSLKIETWNLLSELGRTKSLAQAAERLDMDLPAASRLVSSLEKELGVEILDRKRKPAQ IVTKSLELFSEADRIARQYQRLLKTAESIKHQDTIKPKRILKVSLPANIDRSAYLNAFSN FERKHSGLRVEVLIDAGEDGLLNGAADVAYFGYRPTKEGIAWIPAGHNVTFLMASRSYLR RNGTPQSVQELRNHTLLLRNSSNRSFSRRLENRDAVFEIESDEKVHFEDAYSCRTHLIAG EGISVDLVPSFVADELMRGDIVPVLPGWHRRPWEICVCRRDSDHSPLVSEMADLIVENFK KHTVDSWMFWYRYFSIPLESVVLPAVD >gi|301349836|gb|ADCQ01000014.1| GENE 92 102582 - 102959 383 125 aa, chain - ## HITS:1 COG:VC1574 KEGG:ns NR:ns ## COG: VC1574 COG3169 # Protein_GI_number: 15641582 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 17 125 18 126 127 135 62.0 2e-32 MQTLSQFFSQIPVLYKTAALLLLSNCFMTFAWYAHLKNLGNSPLWVAIISSWLIAFFEYC IMVPANRIGFSDLSLGQLKILQEVISLSIFVPFAFLYMKQPLKLDYLWASLCMLGAAYFM FRDKL >gi|301349836|gb|ADCQ01000014.1| GENE 93 103030 - 103926 829 298 aa, chain - ## HITS:1 COG:L124727 KEGG:ns NR:ns ## COG: L124727 COG0697 # Protein_GI_number: 15672884 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Lactococcus lactis # 7 291 21 307 310 121 30.0 2e-27 MNIRTLGVICGVLSGFFWGTMDIAAQYLLHTVRMAPAQFISLTMVVTTVALFGISLATRP KETFLAAADKQNVFQFFLFGVLVLLTQVSFYVCVKYSNAETAAVIAATRPFCIMGLLLFA AVMPTASQIFCCALALIGVCLMMTKGNFSTLSFGWLTLLVGFVAPLFSAAYTIQSRTIVR KVGPLIAMTWAMLFTTILCNLYYPFWKVSLEWSFLTILSVLWVAIMGHIVAYTLYIVSAS KILPTITGVLETVEPLTAIVLSYFFFSQKMNGFMLAGAAMVLIAVVLLGFSRPKDKAN >gi|301349836|gb|ADCQ01000014.1| GENE 94 104062 - 104811 485 249 aa, chain + ## HITS:1 COG:PA4663 KEGG:ns NR:ns ## COG: PA4663 COG0476 # Protein_GI_number: 15599858 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Pseudomonas aeruginosa # 8 247 9 248 252 229 48.0 5e-60 MSIVQENRYSRHELLKEVGVEGQKRISQGRVLIIGAGGLGSPASLYLASSGVKKITIVDS DTVDLTNLQRQVIHNVERLGMNKAESAKVSLGAINPEVEIVPVDHRPTLEELEKLVSECD VALDCTDNTESRYIFNDVCRRFKKPLVTAGVVAFDGQITVFDFRDPESACYACLFPNHEG KDEKASTKGVFAPLVGMLGCMQAAEALKIIGKFGEPLTGRLLMVDARTMTWCQMKYRRDD ECPCCSQGR >gi|301349836|gb|ADCQ01000014.1| GENE 95 104815 - 105072 401 85 aa, chain + ## HITS:1 COG:BMEI1253 KEGG:ns NR:ns ## COG: BMEI1253 COG1977 # Protein_GI_number: 17987536 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Brucella melitensis # 1 85 1 85 85 73 45.0 1e-13 MKVKVLYFASLKERLLKGEDTVEVPEDVKTVEDLINYLSENDAALKAAFEEMPRLRFAVN QEMAKESTVLKDGDEVAFFPPVTGG >gi|301349836|gb|ADCQ01000014.1| GENE 96 105219 - 106169 885 316 aa, chain + ## HITS:1 COG:no KEGG:Shal_1631 NR:ns ## KEGG: Shal_1631 # Name: not_defined # Def: hypothetical protein # Organism: S.halifaxensis # Pathway: not_defined # 11 292 17 296 309 88 27.0 2e-16 MSGLFHSPQLGGFAALGAFMALLSDTESDLISRLGGVAITFIGVMCAALLGVVLKNMEYG KWLVIGLVCFGQSLMTFAEKFWWLWGKYVLVFLLISIFDFTPDLMAFVGYFIGFSLAMAA IVLDHFVWRYEKLSLRPMAQLKLVEGGNRNSYAYALISIATLICALGCSFLFDFSEPGWV GITALYLLNSNVAAGYKRVVQRILGTLLAYFLVILIFPYIDDKFVLGALIVASSAGIPVF VGGNYTCMTFFITCYILFVLDWLMRAYGGDYSILIWRIWDTLMAAGWVALGLGVLYLWEK RLKKAGVEPRIPRNEN >gi|301349836|gb|ADCQ01000014.1| GENE 97 106254 - 108575 2713 773 aa, chain + ## HITS:1 COG:MA0081 KEGG:ns NR:ns ## COG: MA0081 COG0855 # Protein_GI_number: 20088980 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Methanosarcina acetivorans str.C2A # 77 761 1 679 696 586 44.0 1e-167 MADDNKTTNATSTAKPAAAEPTKAAAPAEAKPAAKAPAKPRTVKAPTIRRPAVRRTAVKA AAPAAAAKETSLEEVSLDDPSLYINRDISWIEFDRKVLETAMDPEIPLLNRVLFLSIFYN NLDEFFMVRVMNVQRQARSGAEPTGPDKMPPARQLSEIRRKVTEILEEAENLWIDTLKPE LENKGIRFSKYSALNAAQKKEMNRYFDEDIFPVLTPQAVDKGRPFPMISNTSLNFVMELE AIESGISVKNRFARLKCPNNVPRFLFVSNKDNTVTPDLSYATTEGVIVLTEDLIGNRLNT LFPGYKVKSQGLFRITRNTDGEIEEDEADDLLSAVRDYVEQRRFGSIVRVEIEKGMPQRL QDFLYEHLDLHPNQFYRCRVPLAFSEFGRMMKIDRPSLKYPSDHPKTPKAFEQGRNCFDE IRKRDILVYHPYDSFNCVLEFLKQAALDPNVVAIKQTLYRCGSDSPVAKALLEARRRGKQ VTAVVELKARFDEEQNINWAEEMERNGVNVVYGFAGLKIHAKLCFVVRREKGKLERYTHI GSGNYNAASAKIYTDLGLFTANKDINDDVQDLFNVMTGYGVVNHYRKLLVSPHTLRPGIT KLIRREIEQHKKHGNGHIIIKCNQLVDYEMVKVLYEASRAGVKIECIVRGICSLRPGLPG VSDTITVRSIVGRLLEHARIYYFHNNGDEEMYFGSADLMTRNLNGRIEVLTPLLQENLCN NVMNQIVIPQLKDNIHAWVMNSDGSYTKLQPKKDETVYDSQEEIAKKLNLMKK >gi|301349836|gb|ADCQ01000014.1| GENE 98 108644 - 109621 679 325 aa, chain + ## HITS:1 COG:no KEGG:Ajs_0810 NR:ns ## KEGG: Ajs_0810 # Name: not_defined # Def: hypothetical protein # Organism: Acidovorax_JS42 # Pathway: not_defined # 1 324 1 324 329 207 37.0 4e-52 MTRDTSSLQEAKMLLEVLKRIPLNRKISTTDLHQQLTAAGYELSRRTLQRYLKALSESDM GVQCDDKSKPFGYRRLLNSNDLDRVGLGADGALLLLLAREHLRYQMPPDLTNSLSYLFDA AENYMHTASGSSPEKRWLSKVRFVSGSLPLCPPMIRPLIFNKVSEGLFKQVKLDIVYFKS ENEEEVQLRVSPLGLVQQDVRLYLVCCYEDTTQIRNLALHRIKKVELTTFIAEEPKGFDL QQYVDRSPFNYGNAQKVLLEMVFKNRQTALILRETPFNRMQKLEERRDGTFKLTVEVADT VLLTGWIEAWREKAGIISVKKTPIQ >gi|301349836|gb|ADCQ01000014.1| GENE 99 109675 - 111234 1086 519 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860230|gb|EFL83307.1| ## NR: gi|302860230|gb|EFL83307.1| putative transposase subfamily [Burkholderiales bacterium 1_1_47] # 1 519 1 519 519 910 100.0 0 MEQKRTRRTFDPSFKHHAALRVVEGKEKAAAVAADLGINIVSLYNWVKDYEKTKATAIAN AQSQATQAAETAPTTQTPVETSSPIESPAAEAPRRPKLQLKKRPPETAEAAAPSPVTPAL ASPTPAPAPTFNNEPRVFSPTPEPAVQETRPAPEVKEPAFETPVSHSEFSSNNSRRENFQ QRDKGNRRNSLFQRTMRGRNASKNEKALHDSFIQSAVDNAVVSAQAQKAQENRPQPPKHN PNIYQVPIYDTETELRMDTASEGQEHEEPKWPIPSASQGRSWKVMHALDQRPNYKEESAK FGYVDEFDLPAENLPEVWAILDLMQKNADKHAFEEMVHSKDLNVPPEVLADPRTMVVSGP NVPNKPWLRKPRLNPIAEDFFQTTPDYSKSVYETYGGITLRLAKNSTGSPILLVEPSPNG GKDVTIDFSKFDRFVDDFYGNFVRDCKTVMMKQNPKEYPSLNAFIRIPDEPMWNPKLWAG VRTFNWRDGESLSEAWIRYAYDQRRNSRHQKYFYRTDRE >gi|301349836|gb|ADCQ01000014.1| GENE 100 111650 - 113014 962 454 aa, chain + ## HITS:1 COG:PA1288 KEGG:ns NR:ns ## COG: PA1288 COG2067 # Protein_GI_number: 15596485 # Func_class: I Lipid transport and metabolism # Function: Long-chain fatty acid transport protein # Organism: Pseudomonas aeruginosa # 16 454 11 424 424 137 27.0 3e-32 MTTKNSVFGKLTIAAALCSSAIMCASTASAAGFQLTEQSVAGMGRAHAGAGIIGDDVSAI HFNPAGMTLLHGLQTTVAGTYVSLDIDYKGLNGATENGRDKPASIPAAYLSYQVNDSLWL GLAITSPYGMRIRYNNDWAQRERGISGSVTTVDINPSIAWKVNEYVSIGGGVSALWTHSK IKSGITKGYQLGNVGVPLGGEFEYKGSDWMFTYNLGLMVSPTEDLRFGVSYRSSAHVTAR GDYYIRGNALMNGEGDGKGRLQTPETVYISATWKPIQRLRLSGLARWANWKKFENMRFSM DNLNNLQPSSESAGLVQGLPDKLKPMVPYAMGVIQHKLGNVNIENNWKAAWLFSLGADLD ITDQWTIRGGIALETDPIKHQQLRTALIPDTKRLWLTCGLSWKPTPKWQIDMAYGHIRGI GHRDLYASAESNVKVGKFEKMNAWMAGAAVTYRF >gi|301349836|gb|ADCQ01000014.1| GENE 101 113065 - 114216 1097 383 aa, chain - ## HITS:1 COG:STM0394 KEGG:ns NR:ns ## COG: STM0394 COG2814 # Protein_GI_number: 16763774 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 3 367 1 366 390 190 36.0 4e-48 MQLNKHIAALCIGTFCLGVAELGIVPVLTAIANDFHVTIPQAGLYISAYAAGVCAGIVGL LAFGRNANLKTTLLIAAGLIFCGNLGASLAQNDIMMLAARFVSGSPHGIFFALSAVVCER LAESGKASRDVTLMVLGQTSANLVGVPLGSLIGFALSWRLIFGSIAILALLLILALTRWL PSMPVVKKPLTNELSTLKSWHPWFILSGVAIGSAGFYAYYSYVDPIMATVAHMSAASMTL IMFLAGAAMFIGNIVSAPLTKYYSDVALVCVGQTLIAIAVLGALFYSDVAWIALTSMALA AFGYFFIAGPMQALIIAGAGDAKVILAALGQIAYNGANAIGAFLGGEAIRHYGFANFSAL PGSVLSFISAIVFISLLLRYPRH >gi|301349836|gb|ADCQ01000014.1| GENE 102 114330 - 114692 399 120 aa, chain - ## HITS:1 COG:RSp1515 KEGG:ns NR:ns ## COG: RSp1515 COG0251 # Protein_GI_number: 17549734 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Ralstonia solanacearum # 2 118 5 126 130 83 37.0 1e-16 MREVILSSLPPPNGHYSHAVIFNGAAYVSGVLPMRVKPGASVKEQFDAVFDIIEAILKEC ESSLDKVVNCRIYIADLNDWPEINRLYSERFKSARPARVVVPVKELHFGYRLEVELMAAV >gi|301349836|gb|ADCQ01000014.1| GENE 103 114689 - 115834 986 381 aa, chain - ## HITS:1 COG:AGl1808 KEGG:ns NR:ns ## COG: AGl1808 COG3616 # Protein_GI_number: 15891021 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid aldolase or racemase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 374 23 397 397 387 53.0 1e-107 MNLKTVQTPALLLDLDKFTRNCNWMKEKAERLHVALRPHLKTGKCIEFARTQMTSPSGPA TVSTLLEAEYFFNLGVIDLIYAVGISPGKFERAVNLREAGCDLKVILDNKETAEQFSAYC EERKIPCPVLIEIDVDGHRSGVKPDSDDLIEIAKILQGKAYFAGVLTHAGDSYKCVGQAA CLKAQENERDSLVHCADRLRKTGFEPKIISAGSTPTAVFAESWEGVTEVRCGVYCLFDLV MAGLKVCTIDQIALSLLVEVTGHQKEKGWVITDGGWMALSRDRGTAAQAVDQGYGLVCDI DGNPIDDLIVASANQEHGILAHRDGRLVDPKDFPIGTRLRILPNHACAMAAQHPQYFVVR KGKIVDIWNRIYGWQPKGVSL >gi|301349836|gb|ADCQ01000014.1| GENE 104 116415 - 116870 223 151 aa, chain - ## HITS:1 COG:L1005 KEGG:ns NR:ns ## COG: L1005 COG3153 # Protein_GI_number: 15672038 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Lactococcus lactis # 3 148 24 172 173 94 36.0 7e-20 MQESDHREQFLVKRLLSSPGFIPELSLTAWIGSEFVGYILLTEIEILSKAGSIPTLSLAS LAVRPDFQRQGIGAALIEEAHKHAAELNFETVLVLGHKHYYPRFGYRRAEDFGIVFPFEV QPEFCMVKELTPGAASRAADQVKYPSTFFEY >gi|301349836|gb|ADCQ01000014.1| GENE 105 117165 - 117662 473 165 aa, chain + ## HITS:1 COG:NMB0457 KEGG:ns NR:ns ## COG: NMB0457 COG0802 # Protein_GI_number: 15676368 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Neisseria meningitidis MC58 # 3 160 2 151 153 124 43.0 1e-28 MNTDAHSLEFHLADEEATSELGARLARALDSVKSEILEKGLNIKLVGDLGAGKTYLMRSA LRALGFEGRVKSPTFSLLETYKVDGFTVNHFDFYRFEDPVEFEEAGFRENYGPGRVVASE WTSKAGPFVPQPDLTITLKSEGEGRVCDISADSALGNQVLEVLKK >gi|301349836|gb|ADCQ01000014.1| GENE 106 117662 - 119092 973 476 aa, chain + ## HITS:1 COG:RSc2539 KEGG:ns NR:ns ## COG: RSc2539 COG0860 # Protein_GI_number: 17547258 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Ralstonia solanacearum # 4 470 21 496 507 381 46.0 1e-105 MNTRRSFLEGAGGALLLSFVPWSPAYGAQVVDVRAWPAEEYTRITIEHDAPMKFKYFVLR NSDPVRLAVDIDGLLLTDKLKQIIQKVKPNDPYISRIRVGQNRPNVVRISIDFKTDVDPQ VFSLKPAGQYRYRLVFDIYPATQKDPLMAIIQKEESEPDAIKSLLAQVAEGQKRMEENRA DSGEVDQLGQILAGIADGSLAPMRPDEEPKGSSKPAQKKPAQKKPETQLAQTKPSKTKPA RSPRVRTLVIMIDPGHGGEDPGAIGRRHRTREKDVVLAVARILRQELNEIEGVKALLTRD GDYFVPLQRRVQKARAAKADFFVSIHADAWVKPTARGSSLYVLNTRGQVSTANRWLARKQ NDADLIGGVNLSNKDKQIARILMDMSMTSQVSDSMVYGARILNELSRINQLHRGKVEQAN FAVLKAPDIPSVLVETAFLSHPEEEKKLRTRAFQRKLAYAIGNGILKGFGHKSRLG >gi|301349836|gb|ADCQ01000014.1| GENE 107 119266 - 120333 1369 355 aa, chain + ## HITS:1 COG:RSc0573 KEGG:ns NR:ns ## COG: RSc0573 COG0191 # Protein_GI_number: 17545292 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Ralstonia solanacearum # 1 353 1 353 354 523 72.0 1e-148 MALVSLRQLLDHAAENNYGIPAFNVNNLEQVQAIMQAADEVNAPVIMQASAGARKYAGEV FLEHLIKAAIESYPHIPVCMHQDHGQSPAVCQGAINLGFSSVMMDGSLMSDGKTISTFDY NVNVTKEVVNMAHRVGVSVEGELGCLGSLETMKGDKEDGHGTDAEMTRDQLLTDPDQAAQ FVEETQVDALAIAIGTSHGAYKFTRKPTGDILSIQRVKEIHARIPNTHLVMHGSSSVPQE YLEEIRKYGGQFRTTYGVPVEEIVEAIKYGVRKVNIDTDIRLAMTAAIRKYFVENPEAFD PRAYLKAARAASVEMCKSRYIAFGCEGQASKIKPLPLPEMARLYSEGVLRQKVND >gi|301349836|gb|ADCQ01000014.1| GENE 108 120428 - 120829 451 133 aa, chain + ## HITS:1 COG:ECs5025 KEGG:ns NR:ns ## COG: ECs5025 COG0818 # Protein_GI_number: 15834279 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Escherichia coli O157:H7 # 16 131 6 121 122 115 51.0 2e-26 MEKHQPKDASELKGKTGLRRLMNAAKYSAQGFRGAWQTEEAFRQEAILACVMLPVAVLLP VTTVEKLLLILGLFIVLIVEILNSAIEAVVDRFGGEIHPLSGKAKDLGSAAVLLALTICA IIWCTILFTNFIL >gi|301349836|gb|ADCQ01000014.1| GENE 109 120913 - 122292 1861 459 aa, chain - ## HITS:1 COG:RSc2720 KEGG:ns NR:ns ## COG: RSc2720 COG0015 # Protein_GI_number: 17547439 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Ralstonia solanacearum # 8 459 4 456 457 582 63.0 1e-166 MNFIVMELSALTAISPLDGRYGRQTAELRDIFSEFALMRARVTVEVEWLIALSEFNLPEL KDLSEEDKLYLRGLVSSFSVADCQAIKDIEKTTNHDVKAVEYWIKSKMTVNEHLAAASEF VHFGCTSEDINNTSHALMLSSGRQLICSHLQMIIDKLKGFAHEWAGVSMLSRTHGQHASP TTVGKEMANVAARLEFAVQAIEKVKLLAKMNGAVGNYNAHTIAYPDKDWPAFARNVVENR LHLTFNPYTIQIEPHDYMAELFNAITRANTILIDLDRDIWGYISLNYFKQQLKEGEVGSS TMPHKVNPIDFENSEGNLGMADAFFTFLAQKLPISRWQRDLTDSTVLRNLGVAFGYSIVG YTSLERGMNKLRLNEEAIAADLDQSWEVLAEAIQTVMRRYGVPHPYEQLKALTRGKGISP ETIHEFVATLDIPEDAKASLQKLTPATYIGLAETLAKEI >gi|301349836|gb|ADCQ01000014.1| GENE 110 122468 - 122962 408 164 aa, chain - ## HITS:1 COG:RSc0662 KEGG:ns NR:ns ## COG: RSc0662 COG3762 # Protein_GI_number: 17545381 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 5 164 12 173 173 90 32.0 1e-18 MSIGRILKHWVMSPVPVTMAFPQSSLDAVTKCIEECEQQTSAEFRLIIERSIPSKGLREN ITDAQRAKELFGRYGVWDTEDNNGVLIYLNLSDRAIEIYLDRGAAREVRQTQLDDIVKQM EIAFADKKFEEGVCQAFRSLAAILSKPFPNKPVQDPMPNTPVVL >gi|301349836|gb|ADCQ01000014.1| GENE 111 122966 - 123967 1011 333 aa, chain - ## HITS:1 COG:PA0536 KEGG:ns NR:ns ## COG: PA0536 COG1512 # Protein_GI_number: 15595733 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Pseudomonas aeruginosa # 32 177 16 162 341 132 48.0 9e-31 MVQQLQLRPNLNRFGLLIGAFFFWLSALFCTVSAADLLPIPEVAYVTDTAHLLTTEQKRS LEAKLAGFEKKYGSQIAVIIVPSTNGEPIEDYAHRVGDNWKLGRKDVGDGLLLIVAVNDH RIRIDVMRALEGAIPDVAASRIITDVMAPNFRQNNYYQGISQALDKVFTLIEDAKLPAPQ KKRSEANILYDPAEALWDEPWVAVLFIGFVITMMLRELMGRKSAPLAGLAVGGLAAFIMQ PLFAGIVIALIVVVIAMCIPTAVLEAGARRTAKMYGTDRRYRGKRGGGDDGFGGFGGFGG GGFGGGGFGGGMGGGAGSGGGGDAAGGGASGGW >gi|301349836|gb|ADCQ01000014.1| GENE 112 123933 - 124556 712 207 aa, chain - ## HITS:1 COG:PA0537 KEGG:ns NR:ns ## COG: PA0537 COG1704 # Protein_GI_number: 15595734 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 19 196 18 195 202 214 60.0 1e-55 MKRFFLILLGMFMSATMLTGCGYNEIQTLDESTKAAWSEVLNQYQRRNDLIPNVVNSVKG EADFEKSTLTQVINARAKATSIQATPELMENPEAFQKFTQAQGELSSALSRLLVTVERYP DLKANKAFQDLRVQLEGCENRIAIARNRYIKSVQQYNTYIRQFPQMVWVWILGYKPKAQY AVADEAAITTPPTVDFNGSAATAPAKP >gi|301349836|gb|ADCQ01000014.1| GENE 113 124580 - 125140 666 186 aa, chain - ## HITS:1 COG:ECs2471 KEGG:ns NR:ns ## COG: ECs2471 COG0778 # Protein_GI_number: 15831725 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli O157:H7 # 6 169 4 167 183 85 36.0 4e-17 MHDSVLERVTLRRSLGAKYLTTPAPSKEDYAEALTWAIAAPDHCYLSPARFVVIEERQKF SDFFEAGALADGADQEGAQRARSKALKAPAMVAVVAKIDEHNERVPTHEQWMTVGAATSN FLAALELKGFAGKIVSGSSTHYRDAVDALCKKGEVIACWIMLGTAKPDAPGAEVRSIYDE LLTYFS >gi|301349836|gb|ADCQ01000014.1| GENE 114 125248 - 126066 740 272 aa, chain - ## HITS:1 COG:PA4662 KEGG:ns NR:ns ## COG: PA4662 COG0796 # Protein_GI_number: 15599857 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Pseudomonas aeruginosa # 1 258 3 260 265 223 44.0 4e-58 MSNAPIGMFDSGLGGLSVMHAVRDALPGEDIIYYGDCLYAPYGDRNSEYIKERCLAIGRF LISKGAKAIVVSCNTATAEGVNTMRDTFDIPIIGIEPAIKPAAAATKTGVVGVIATTRTI TSERYLRLVREFAGTKVKVVSVPCPGLMECVESGDWDSFKTQKLIEKYLHPIKRAGADKL VLGCTHYPFLSNVLKRELGSGTELIDPSAAVARELKHQLSKRGLLSDGAKGKEVFYISGD AEKHRAVIERLWNSEEALDLRSDPPATKATLS >gi|301349836|gb|ADCQ01000014.1| GENE 115 126059 - 126964 750 301 aa, chain - ## HITS:1 COG:PAB2381 KEGG:ns NR:ns ## COG: PAB2381 COG0697 # Protein_GI_number: 14521649 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pyrococcus abyssi # 14 284 11 270 280 96 31.0 5e-20 MTPSRFNVSPEWGLVMVTALWGSSFILLSLSLKGLSPGLLVALRFGGGAVLMACLLRSAL FKLKKVDWIAGCATGTCIFLGYFLQTVGLQTITSSISAFLTALYVPFVPLFQWIIFRKRP TPIIAGGILFAFLGMLLILDPTKISFNGNIGEWLTIASAAACAMEILVLGRFANSCDPKA FCFTQLVTVTFWSTLYCIVFEDVRFDPTPVTYVYMAILIGMIVFNQVMMCWAQKFVSPTR AVLIYTLEPVFAGIIGYAIGEPFTKGAVVGAVMVVLSILISSWLPGYLKNRGYISKEAVR E >gi|301349836|gb|ADCQ01000014.1| GENE 116 126961 - 127839 816 292 aa, chain - ## HITS:1 COG:RSc1401_2 KEGG:ns NR:ns ## COG: RSc1401_2 COG1187 # Protein_GI_number: 17546120 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Ralstonia solanacearum # 8 255 8 261 261 303 62.0 2e-82 MSDTPADLVRLSKRMSELGLCSRREADEWISKGWVKVDGQVVSELGSKVRPDQKITIDRK AKDQQNERVTIILNKPLGYVSGQAEDGHEPARILITPRNRWIDDPSPRRFNPSQLKSLVP AGRLDINSTGLLVLTQDGRIAKTIIGENSSVEKEYIVRVAMTDGRSNSEFPPAKLALLNH GLELDGKPLEKAEVSWLNEDQLKFVLREGRNRQIRRMCDLVGLKVLALKRVRVGNIPLGN LPVGKWRYLEDGESFTGSAPKRAPSSRPAAGAPRRPKTFKPRKPNFRKTRDE >gi|301349836|gb|ADCQ01000014.1| GENE 117 127836 - 128840 1072 334 aa, chain - ## HITS:1 COG:RSc0577 KEGG:ns NR:ns ## COG: RSc0577 COG0009 # Protein_GI_number: 17545296 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Ralstonia solanacearum # 5 326 16 330 336 238 46.0 1e-62 MHSDLEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASA KALPYWAREIPEDAKKLTEAFWPGPLTIVLKRSAHAKDFVTGGQDTVALRCPSHPLAHEL LKRFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTI LDLTGETPRILREGDVSGEMISKVIGKPVEHGAVGASPRVSGSMKSHYAPEHVLKIVSAD DLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRDGG DVIFAVEPELTDSSAGVLDRLTRAAAERPNKESK >gi|301349836|gb|ADCQ01000014.1| GENE 118 128845 - 130014 1284 389 aa, chain - ## HITS:1 COG:RSc0576 KEGG:ns NR:ns ## COG: RSc0576 COG0026 # Protein_GI_number: 17545295 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Ralstonia solanacearum # 7 386 26 409 413 351 53.0 1e-96 MMKDTPILPGSWLGLMGGGQLGRMFAQAAATMGYRVCVLEPDKNAPAAIVAEKHICAPYT DEAALTELASLCKTVTTEFENVPAAALEFLASKGVETCPAANAVRITQDRFDEKSFIKSA GAPVAPHLLIESDEDLKKASAPYFPAILKTARLGYDGKGQITVNDRRELAMAFEKLGKVR CVLEKRLPLFKEVSVIAARNSKGEVAVFPVSENYHRNGILAVSVMPARLDEEITNRAREI ASKIIEKLDYVGVLCTELFVLSDGRLVVNELAPRPHNSGHATIDACICSQYEQQVRAMAN LPLGDTTQVSKSVMLNLLGDLWFDENENVREPDWSQVLDIPGLKLHLYGKKQPRHARKMG HITCLAATEEEAMFKAQMAARILGLELPE >gi|301349836|gb|ADCQ01000014.1| GENE 119 130022 - 130516 768 164 aa, chain - ## HITS:1 COG:RSc0575 KEGG:ns NR:ns ## COG: RSc0575 COG0041 # Protein_GI_number: 17545294 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Ralstonia solanacearum # 3 164 5 166 169 189 70.0 3e-48 MQENKPVVAILMGSNSDWDVMKNAAEMLQSFDVPFEAKVVSAHRMPDEMFEYAETARDRG IRVIIAGAGGAAHLPGMLAAKTTLPVCGVPVPSRYLKGQDSLYSIVQMPKGVPVATFAIG EAGAANAALYAVQILGTTDAVLADKLAAFRKAQNEKARNMTLPL >gi|301349836|gb|ADCQ01000014.1| GENE 120 130592 - 131485 1171 297 aa, chain - ## HITS:1 COG:RSc0574 KEGG:ns NR:ns ## COG: RSc0574 COG0152 # Protein_GI_number: 17545293 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Ralstonia solanacearum # 7 293 8 299 302 398 64.0 1e-111 MAEIVTTSIKSLPLVYRGKVRDSYAVGDDKLLIVASDRISAFDVILGDPIPKKGKILTAL TDFWFKELDGIVPNHLTGIDPESVVAPEERDQVKGRAVVAKRLKPILVECVARGYLSGSA WKEYQTTGQICGVKLPAGLKQSEKLPEPIFTPAGKAEAGHHDENITYEDVVKQYGEDTAS KLRDYTLALYKKAAEYAASKGIIIADTKFEFGLDDNGTVVLMDEILTPDSSRFWPADEYK VGQSEPSFDKQFIRDWLESQPWNKKAPAPKIPQDVLDKTSSKYEEALIRLTGKGVTA >gi|301349836|gb|ADCQ01000014.1| GENE 121 131673 - 132629 1017 318 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860252|gb|EFL83329.1| ## NR: gi|302860252|gb|EFL83329.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 318 1 318 318 595 100.0 1e-168 MNLKMKHLMTALIASAAVGQAVHAQEASSAVAQDTKQVEQAADGMANKVAGWLDKLSDSV RTLGEKSEEWSKDAATYKDQLKEQWPSIKEQFNQKLSEGMEKGQQSKEAVSKWLDDTFSQ ERINKAEEWMTNFKNGVTDNVVDPLVPYLLAMRYPNPMDEWNQGYRREYPVSIKGMDRPL QVTLPLSWNLSQNLQLGQNEFMSWRSESGTGQYVVALIETPTGATVDSIVAGLQKARPDA VTEKLPNSQIVRVYFPAKTDAENAVYYYAVPTGDQVFTVCGEVLRSKDEKTEALNQRLQA ENNFFNAVASNIFVKPAS >gi|301349836|gb|ADCQ01000014.1| GENE 122 132750 - 133208 404 152 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860253|gb|EFL83330.1| ## NR: gi|302860253|gb|EFL83330.1| hypothetical protein HMPREF0189_00407 [Burkholderiales bacterium 1_1_47] # 1 152 19 170 170 291 100.0 1e-77 MKIRWQLWFLVTLLICAFYCIWDTTFAFSRGEKLAQADWTYVEKAGHKSLAGYCSKIGVT GDGKTPQTVTKEVFEPAKNPLICASSLEEAKQSYGLFVQGQSRKASTQMVFMFIGAWLVI LLALFGLMKWTNRKAAPESASTAEKSKSKARR >gi|301349836|gb|ADCQ01000014.1| GENE 123 133186 - 133833 631 215 aa, chain - ## HITS:1 COG:alr1343 KEGG:ns NR:ns ## COG: alr1343 COG0352 # Protein_GI_number: 17228838 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Nostoc sp. PCC 7120 # 11 198 179 361 379 129 39.0 5e-30 MKSGKKLDLSLYLVLDANLCKTPEGMAETARKAVEGGCTVVQLRAPEWKKKKQLRAAFLL KELLKDTDVLFIVDDHIDIALLSGADGVHVGQEDIDPKYVRQLLGPDAVIGLSVGSIKEL NTIGPDVDYIGIGPVFSTKTKVDAGAAVGLGLLEYISKEAGLPNVAIGGINQSNAADCIR HGADGIAVVSAICGAEDPKAAAAAIKKAVNDALSI >gi|301349836|gb|ADCQ01000014.1| GENE 124 133830 - 134630 667 266 aa, chain - ## HITS:1 COG:ZthiM KEGG:ns NR:ns ## COG: ZthiM COG2145 # Protein_GI_number: 15802579 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Escherichia coli O157:H7 EDL933 # 6 262 3 259 262 228 49.0 7e-60 MSSDSVQLCLSRKTGEMLHRLRANRPLVHCITNEVVQEFTANVLLAAGASPAMVVGEGEA EYFAGIASALSVNVGTPYEARIETMKKAIRGALAAGKLWVLDPVAAGGIPWRDKVIFELL EMQPTAVRGNASEIRFLAGVGTGGKGVDSLDDSSSAIEAAKTLARKYKTFVVVTGLKDYA TDGERVLCAVGGSEMMTLVVGTGCSLSALLAAFLGGAERSLEACIACCDYVNYANDTAST RSSGPGSFHFQYLDALYQIRPEDFRK >gi|301349836|gb|ADCQ01000014.1| GENE 125 134670 - 135152 543 160 aa, chain + ## HITS:1 COG:RSc2403 KEGG:ns NR:ns ## COG: RSc2403 COG2947 # Protein_GI_number: 17547122 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 9 157 18 164 168 166 53.0 2e-41 MAGFEHYAWLMKSEPSEVSVDDVLGMKDCKVGWFGVRNYQARNFMRDLCKIGDPVLFYHS SCAQPGIVGIGEIASEPYPDPTQFDETSEYFDAKSTQAKPRWVQVDVHILHKVKLVSIAE LRTIPGCEGMRVLQKGNRLSITPVNEDEWKALQPHLISQT >gi|301349836|gb|ADCQ01000014.1| GENE 126 135255 - 136070 831 271 aa, chain + ## HITS:1 COG:PA0340 KEGG:ns NR:ns ## COG: PA0340 COG0730 # Protein_GI_number: 15595537 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pseudomonas aeruginosa # 8 256 5 251 267 167 42.0 2e-41 MALTTIGLMALLGCFTGFMAGLLGIGGGMIITPFLIMLIPSSLIPHEHIVHVAIATSLAT IAFTSLSSVRAHHKRGAVLWNVVASVAPGILVGAVVGAQIAGWLPTFWLSLIFAAFVGFS AFKMFLNKSPRPDRNLPGTIGKFFMGIAIGILSALVGAGGGFISVPWMIWCNVKMQNAVA TSAAFGFPIALFGTIGYIISGWNVSGLPPWPIDLGYICIPALFSVAITSVLFAPLGAKVA HSIDTKPLKKIFACLLCFVCLYMIRQAYLAM >gi|301349836|gb|ADCQ01000014.1| GENE 127 136202 - 137686 1434 494 aa, chain + ## HITS:1 COG:RSc3125 KEGG:ns NR:ns ## COG: RSc3125 COG2925 # Protein_GI_number: 17547844 # Func_class: L Replication, recombination and repair # Function: Exonuclease I # Organism: Ralstonia solanacearum # 10 466 16 460 489 253 33.0 6e-67 MTDTVNNSTSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPS PGSSLVTGITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWR NLLPAYDTEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHR HAHDASSDAFATLQLAKLIASKNPRLWEYALSISKSDKIVELLNEKRPLLYVDRYSLHHR RGLRPVMPLFENPSVRNEWICWDLSADPNEMWAITEKDMKERSFVTREQKEQGIKPLPFV RIKTKKQPFLMKGMSVWITKNGQGLFEHPAAYYSENASKILASADRLSELLSLFMALADR KAEEHAKDIPEEALYSGGFPSNSDARKMATFRALPPEEMADAFDRLEFDREDLAELTLYF MGRNYPEYALTPETERLWRLHKYNKLVKGLGGARTFTQFYEELEEVRAGADEHGLEILED VEGYVENLRSEYEA >gi|301349836|gb|ADCQ01000014.1| GENE 128 137690 - 138478 820 262 aa, chain + ## HITS:1 COG:RSc2410 KEGG:ns NR:ns ## COG: RSc2410 COG0682 # Protein_GI_number: 17547129 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Ralstonia solanacearum # 1 260 1 289 303 286 53.0 3e-77 MLVHPQFDPIAVQVGPLAVHWYGLMYLIGFTLFYLLGLYRCRQEWRGITKANLEDLLFVG MVGVIVGGRLGFVLLYQPEYYLSHLLEIFSVWQGGMSAHGGFIGVILALFYFAWRNKKSI LTVGDFVAPLVPLGFFFGRLGNFINGELWGRVASADLPWSMIFPQAGDGVPRHPSQLYEA TLEGLVLFLVVWIYSIKKRPPGAVSGLFLFGYGLARFVVEFFREPDSYLGLQALDLSRGQ WLSLPMIIIGAGLWIWACRRKD >gi|301349836|gb|ADCQ01000014.1| GENE 129 138475 - 139479 1249 334 aa, chain - ## HITS:1 COG:NMA1571 KEGG:ns NR:ns ## COG: NMA1571 COG0543 # Protein_GI_number: 15794464 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Neisseria meningitidis Z2491 # 1 332 1 331 336 186 35.0 7e-47 MSFTIKLAGTPYEFQAEASETILQAGDKAGFLLPSACRSGACGACKAQVLSGTVALGPHE PFALTEADQKLGLTLLCSAKATSDCEIKVRDVKLAQKKPEGVQAEIVEKTLLDPSIMRLV LKRADGALFEFKAGQTYAVELPGNQKRYYSVASSQNQKETVEFLIRKVTNGMFTGMLFSD MIRVGDKMRLKGPEGTSTFQTPKGRKAVFLATGTGIASVKSIVSTLVENNDLEGRELFIY WGVRTSQELVVGEIFEEWAAAHPQIHYTGVVSREDTWPGAKGHVQTFAAADNGDMTDMDA YLCGSNSMIKAAVNYLTARCGLREDHIFMDNFGF >gi|301349836|gb|ADCQ01000014.1| GENE 130 139924 - 140271 186 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860261|gb|EFL83338.1| ## NR: gi|302860261|gb|EFL83338.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 115 1 115 115 204 100.0 2e-51 MLYTIAIQNLRLQVSVPDSTDTATLDKVVREFNDHLMTFNGGRSVELFESKEVKLLIFTL ISFILGMQKKQEQTHETAAALAKENEKVNIRDDQETLEKIKKLISLCDRGLTKHP >gi|301349836|gb|ADCQ01000014.1| GENE 131 140277 - 140498 134 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860262|gb|EFL83339.1| ## NR: gi|302860262|gb|EFL83339.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47] # 1 73 1 73 73 80 100.0 2e-14 MNREEAFKILEARILELLSRISHLEEENARLQKDLSSKAAQLQAAQAKVNIAAEQLHVEL ERLKAIKDRYRNP >gi|301349836|gb|ADCQ01000014.1| GENE 132 140502 - 141305 901 267 aa, chain - ## HITS:1 COG:RSc2745 KEGG:ns NR:ns ## COG: RSc2745 COG0289 # Protein_GI_number: 17547464 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Ralstonia solanacearum # 2 267 1 263 263 258 56.0 7e-69 MVKIAVAGAKGHMGKMIIDAVWNTEGAELVAALAHKGTDKWEADEDAGASLGYNTGVKIT DDYNVLRTCSAQVLIDFTRPEGTKEFLKICADVGIGMVIGTTGLDAEGKATIEESAKVIP IVFSPNMSAGVNVTYKLLELAAKLLKDYDAEIFEMHHSRKVDAPSGTAIAMGKAIAEARG QKLEDVAVWAREGHTGPRIPGSIGFAALRGGDVVGDHQVTFAGNGERIVISHLSSSRAGY AQGAVKAAIWEAGKKPGLYSMSDVLSL >gi|301349836|gb|ADCQ01000014.1| GENE 133 141512 - 142030 469 172 aa, chain - ## HITS:1 COG:PA4765 KEGG:ns NR:ns ## COG: PA4765 COG2913 # Protein_GI_number: 15599959 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Small protein A (tmRNA-binding) # Organism: Pseudomonas aeruginosa # 32 169 28 168 176 79 32.0 3e-15 MKRFIFCALIPLTLLSGCSSVGDHIPGWLKPYTPDVHQGNVVTSEMVDALHEGMTKNQVI FLLGTPALRNLFHKEQWNYVYFLKPRFGETSIRKLEITFDEDGRVESFKSDRMPDETNAD LAILGERARESTLKRQEELEKEKQEAPVTDGTQQPTETEQAKEETAETPAAQ >gi|301349836|gb|ADCQ01000014.1| GENE 134 142133 - 142591 392 152 aa, chain + ## HITS:1 COG:STM0693 KEGG:ns NR:ns ## COG: STM0693 COG0735 # Protein_GI_number: 16764063 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Salmonella typhimurium LT2 # 7 146 3 140 150 156 58.0 2e-38 MPDTQQENAKNLKNLGLKATGPRLKILEIFQERAKAGEDRHLSAEEVYKELVNVGEDVGL ATVYRVLAQFASAGILTRRNFEHGTAVFELDDGHHHDHLICVMCGKVVEFVDEEVEKRQA EVAAKHGYELVDHSMALYGVCPECRKHKAEQK >gi|301349836|gb|ADCQ01000014.1| GENE 135 142662 - 144317 1425 551 aa, chain - ## HITS:1 COG:RSc2651 KEGG:ns NR:ns ## COG: RSc2651 COG0497 # Protein_GI_number: 17547370 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Ralstonia solanacearum # 1 549 1 547 569 424 45.0 1e-118 MLCSLNIRDFVIVDKLDLEFSDGFTALTGETGAGKSILIDALQLLFGARSDPEVIRSGAQ KSDLTASFTINDKIKTWLEERELSGLNGELVLRRTLDIKGRSRSWINGTTCSLSQLKELS HMLVVVHGQHAHQSLLRKGSQLEMLDAYSGLRPQVDAVRSAWTQWREAQKTLEEARERQA FNQAELERMKWFLEDMKELSPVKGEWARINEEHTRLSRYNDIIDSCQKAREALTEADYSA LELVDSAISAIGDVSDVDAKLEKIYTQLNDAREIIDSASDDVEHYLDRTDFDEGRFEELD QRINLYLELARKYHVEPEELYAEMQKVSEKAAEMEGLSDLTALFNKAHKAKTQYDKLAGE LSKERKKGALNMQKSITDVMQTLAMAGGSFEVAVTPAEAPSSVGIDHCEFLVAGHAGVPR RSLSKVASGGELARISLAIAVTDTMTATVDTLIFDEVDSGIGGAVAETVGRLLAQLGEHQ QVLCVTHLPQVASCASQHFKIEKKSTGEGEAPVSNVYPLTDDQRVQEIARMLGGLTITQK TLDHAREMLRR >gi|301349836|gb|ADCQ01000014.1| GENE 136 144324 - 145196 576 290 aa, chain - ## HITS:1 COG:RSc2650 KEGG:ns NR:ns ## COG: RSc2650 COG0061 # Protein_GI_number: 17547369 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Ralstonia solanacearum # 2 289 8 298 302 246 42.0 3e-65 MTKEFSTVGVFGKRDSLDYEPLRIIAELLIKSGRQVLLEKKPAEALSLGEGFTRDEIGKK SDLIIIYGGDGTFLGVSRRMAHYDVPFIGINAGRLGFVTDIPSDKMVEEISEILSGHYYT DTRCLLEGIQIRDGKEIYRNVAVNEICVSRGNSGGMIEVSVSVNKLPMSRQRADGLIVST PTGSTAYALSVGGPMIYPSVACTLLIPVAPHSLANRPIVIPENSLIEITVTDMRDATLYF DMQDNSEVLVGDIIKASSYPHRVKILHPSRHNYFDTLCKKLHWNYLPTDR >gi|301349836|gb|ADCQ01000014.1| GENE 137 145207 - 145902 288 231 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860268|gb|EFL83345.1| ## NR: gi|302860268|gb|EFL83345.1| hypothetical protein HMPREF0189_00422 [Burkholderiales bacterium 1_1_47] # 1 231 1 231 231 462 100.0 1e-129 MLSSLPYPLLFVSDCSERPPQKYIDRYLSPALLKYAADHPLEQNAVLWSRLLLLSIPYQQ YPDDPPLMIVSDRFTKSLTLGGDSYHYCKTDWQGNNLALVVSDLPVFLSFRSFDSVNDHL KEIARLRFPAIINNWIDRQENPELAFYQYWTLSECLKDRNDPTVRIKIDDDDCLTVKGSS VLLRETFQFWTSEDWICTVQGPALTNLLYEVRKPGKTLQLLDEAFEKFGTE >gi|301349836|gb|ADCQ01000014.1| GENE 138 145925 - 146317 558 130 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0223 NR:ns ## KEGG: Pjdr2_0223 # Name: not_defined # Def: protein of unknown function DUF423 # Organism: Paenibacillus # Pathway: not_defined # 1 120 1 120 120 66 33.0 3e-10 MHFWAFIGSLLLASGVAMGAYGAHGLRAIVDVPRSIEAFEYAVQYQLISALGFFAIAWAT NHFKAGLVNLAGLLLLIGSIGFSLSIYLLVLAQWRPWPLVTPISGGFMIAAWIVMALACL TSKPKHSSFY >gi|301349836|gb|ADCQ01000014.1| GENE 139 146327 - 147115 653 262 aa, chain - ## HITS:1 COG:RSc1172 KEGG:ns NR:ns ## COG: RSc1172 COG0623 # Protein_GI_number: 17545891 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Ralstonia solanacearum # 1 260 1 260 264 343 69.0 3e-94 MSLLKDKKILLTGVLSNRSIAYGIAKACHREGAQLAFTYQNERFLDRITGFAKEFDSEIV LPLDVADDAQIFALAETLKTTWGGLDGVVHSIGFAPREAIQGDFLEGLSRDAFKTALDIS AYSFPALIKALVPLMEGHPSSVLTLTYLGSERVVPNYNTMGVAKAALEASVRYLANSLGP KGIRANAISSGPIKTLAASGIKDFSKILKYMETAAPLRRTVTIDEVGNTAAFLLSDYASG ITGDNVYVDAGFHAVAVPDILE >gi|301349836|gb|ADCQ01000014.1| GENE 140 147340 - 149103 1681 587 aa, chain - ## HITS:1 COG:RSc1516 KEGG:ns NR:ns ## COG: RSc1516 COG0741 # Protein_GI_number: 17546235 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Ralstonia solanacearum # 47 434 60 449 451 349 49.0 1e-95 MFLKTSLRTLALSLALALPLSPYASEPPGEIEEIVTPGADDDEIYTVWTRVRDGFKIPNM ENSVVDENLAKYSKRPDYLQRMANRSQKYLYHIIEEVTARGMPTEIALLPFVESAFVTNA KSRVKAAGLWQFMPATGKHYELDQTMWKDERYDVLQSTAAALTYLQRLHDEFDDWPLAFA AYNWGEGNVRRAIKRNQSLGLPTDYMSLKMPAETRNYYPKLQAIKNIVQNPNDYGIKLPT IYNEPFFVQIFKDQDIDVKRAAKLAGMSHEEFSTLNPSFNRPVIVASHNHSMLMPTDKLD QFIENLVAYRTSGKPLSSWTTYRVQPEDTVAAIARKAHMTEAALREANQIPAGRRIKPGS LVLVSKSSGLGNAEDISSDTIDASFALAQDYRRVTYRVRRGDNMRSVARRLGVSPATIMK SNGLRSQRLRVGQTLRVNVPIVTRQTTTSRPTTTRSTPDTPVASTKFYVVRKGDTLYSIA NRYGITASALRNANNISGNNISVGQRLTINASGTPTKRHVVLEEVPERVQKQVSKRPLAK KKTYKVRKGDTLFSIASSANMSVNQLKKLNGIRNNNLKVGQTLKLSQ >gi|301349836|gb|ADCQ01000014.1| GENE 141 149514 - 149960 258 148 aa, chain + ## HITS:1 COG:RSc1514 KEGG:ns NR:ns ## COG: RSc1514 COG0500 # Protein_GI_number: 17546233 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Ralstonia solanacearum # 1 131 86 218 257 134 47.0 4e-32 MPHALEVSEDPHALLREVYRILIPGGRVILTGFNLMSLWGLRFKMQRFGAKTFLPGKQFM SVFQIRDWLHLLSFHVDRGAFGCYGLTFSSAQIKEDSWIEKAGDRWWPQCGAIFAISATK EVPGFKLVGRAVNKKFFFLGRRPAPKSE >gi|301349836|gb|ADCQ01000014.1| GENE 142 149994 - 150449 390 151 aa, chain + ## HITS:1 COG:mlr7504 KEGG:ns NR:ns ## COG: mlr7504 COG0328 # Protein_GI_number: 13476236 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Mesorhizobium loti # 2 140 3 141 177 161 61.0 4e-40 MKEVEIWTDGASKGNPGPGGWGAWMKYKGHVLELCGGALSTTNNQMELTAPTEALCRLKE PCKVILHTDSKYVQQGMTAWIYGWIKKGWKTADGSPVKNAELWKKLYEASKPHKIDWVWV KGHDGIEGNERADFLANLGVEKTLEENKKKD >gi|301349836|gb|ADCQ01000014.1| GENE 143 150896 - 152218 1385 440 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 4 437 8 431 432 211 37.0 2e-54 MLWIGIAIVIGTFWLIYKNYEARLVLFLSGILMTVVGVFVAGSSVGFGQAIDAFVKQLTN PGLVPTYTTVMGFGYVMSYTKCSDHLVNALVRPLAKVPMLVIPGAVIITWFLNIVLPSAV GIAAAVGVLLIPALIALGVPPVMAGAAVFLGTWGSVASPGLMFNPQVADLAFKAGEISSP DAMIVIMSEFFPALCGAVIAAIILAFLAVAMKEGVGSRKFSEDITKKADCSLEVNYLYAL IPILPLFLLVIASKQVGWLPTKIFTVPCCMLIGTGVGLIVGVVNKLKAGDISKKFCRGCG DAFCDVALLIGAAAVFASGMKSIGLTGALVDAMKGSQSIAMVSAAIGPWLMAIVCGSGNA AALAFNEVITPHAADFGMTVVQLGAVAQVAAGLGRTISPVAGGVIVIASIAGVNPIDICK RTFIPVCVALVVFTIGMYFF >gi|301349836|gb|ADCQ01000014.1| GENE 144 152245 - 153663 857 472 aa, chain - ## HITS:1 COG:STM0523 KEGG:ns NR:ns ## COG: STM0523 COG0044 # Protein_GI_number: 16763903 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Salmonella typhimurium LT2 # 2 87 3 91 453 73 48.0 1e-12 MFDLIIHNGRVVDYKNHLDQVTDIAVKDGRIASIGTALGKAKSHLDAKNLLVIPGIVDSH MHASSWLGGPDSLKMLALAGVTTAIEMAGPVDSVKKFIKENGTGLNIGCLEQLRPAVNLS SNHPSSQEILRAVQIALKKGAFGVKLLGGHYPLEPESVDTLFSVCSENGTFLAVHAGSTK QGSNIRGMEEIIKIANGRSFHLAHINAYCRGAVLSVEEEIRKAEQLLEEHPEILCESYLS PINGCSGKCIDGVPESGVTRNCLIAKGYAPTIDGLRAAIEEGAAHVHERADGVVILTNKE KGLKIWSETQTDVPMSFEVNPALPRFFFATQKRKDGKHFLVDAFCTDGGGIPRNVIISSG FSLVKLGALSLQEFVFKSSYSATRLYGLKNKGHFSPGADADITIIDFERQKPIHSFVEGK EVLVDGCVKGQGGKFITTQEGLSACKEYEIEPYLIDIKDIFSYRTERFAKNQ >gi|301349836|gb|ADCQ01000014.1| GENE 145 153774 - 154706 297 310 aa, chain + ## HITS:1 COG:CAC3361 KEGG:ns NR:ns ## COG: CAC3361 COG0583 # Protein_GI_number: 15896604 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 6 302 6 291 312 113 25.0 4e-25 MRNLILHHLEAIIESGSVIGACRRLFLSQPALSQYIKRLEAEYGIVIFDRSVSPWKLTEE GEHLLETQRKIQQLDEECRQFFRDRKGLKSGTVRIGSTAYRTATILNPILSVYKKQYPNV IVRIEEGTTQEVAEFADNGKVDCSFVISSMVPSSLESVEIYSEKVLVGLPPNHPYTKRAS GEASLEEKFPKVDFKELDGTPFIIMKRGQIFNQYYYDLCQKHRVPPQVVLETQSILTVPA LISANVGAALVPSTIADDCMARNVRLFSLGDDVPQNNVSLVWKQGKYQSYALTEFIKTAK EIFLPAFTHQ >gi|301349836|gb|ADCQ01000014.1| GENE 146 154921 - 156600 1678 559 aa, chain + ## HITS:1 COG:STM3807 KEGG:ns NR:ns ## COG: STM3807 COG2985 # Protein_GI_number: 16767092 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 28 555 18 550 553 364 40.0 1e-100 MDWLVSLWSDSNSVGHILLVYAIVITVGLLLGRIKIFGISLGVTFVLFAGLAAGYFGFTV NTTVLHFLRDFGLILFVFFIGLQVGPSFFSSFRSGGVQLNLLTLLAVFLSLAVTVGLYFA FSDTVSLPQMLGVYFGAVTNTPGLGATQEALNMLDYKGEDIAVAYACAYPLAVVAIIATS ICLRFIFRIDLKEEDRMWEESEKENNEAPIFFHVKVTNAALEGKQLEQLRNFIGRPFICS RLLHDGTIISPHAKDTVHVGDVMRIVASAENKDAITVFCGSEDKDVDLATESSPITARNI RVTRSAMNGLTVHDLHLSRYDGVNITRIFRAGMTLFPYPHLRFQIGDVVYCVGPERSIRR LADKLGNQEKKLDHPNLISIFLGIAVGILFGSLPIAIPGMPVPLKLGLAGGPLIVAILLG YYGPNFKLITYTTASANLMLREMGIALFLASVGLAAGRPFVDAILEGNGLLYAFLGLFIT IIPLVVIGSIARKVYKMNYHSIVGMIAGATTDPPTLAYASTLTEKNVSAVAYSTVYPLAM FLRILSGQFVLLILWQYVS >gi|301349836|gb|ADCQ01000014.1| GENE 147 156772 - 158208 1836 478 aa, chain + ## HITS:1 COG:RSc1179 KEGG:ns NR:ns ## COG: RSc1179 COG0008 # Protein_GI_number: 17545898 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Ralstonia solanacearum # 1 464 36 498 500 501 55.0 1e-141 MFTKVRTRIAPSPTGMMHLGTARTAIYCWAVARHFGGEFLLRIEDTDRERSTPEATQVIL DAMKWLNLDYDNKEVVYQMNRLPRYKEVVDQLLAKGLAYKCYATKEELDEMREAQKARGE KPRYDGRWRPENCVGKPIPEGVTPVIRFRNPDDGVVTWEDGVYGEITVANSELDDLVIMR GDGIPTYNFAVVVDDWDMQISHVIRGADHINNTPRQINLYNAIGAPLPTFAHLPLIHGED GQKLSKRNGTVSVLQYDEEGYLPEALFNYLARLGWGHKDDEKFTREQLAEWFELSDCSRS PARFSMKKLDWLNHEYIKGYDDKKLAELVKPRIEKLGGDLSLVKDLPGVMALLKSREPTL QALAKAAMLFCHNNPVDSSSLPAQLKDKEDASFEAMAAFVRKAPSIEWKKEKIYGLMKEI MDEQGVKVLHLAIPLRVLVTGAEKTPSIDATLELYGQERVLTRLNEGMEKWAAQRAGN Prediction of potential genes in microbial genomes Time: Fri May 13 05:42:58 2011 Seq name: gi|301349835|gb|ADCQ01000015.1| Burkholderiales bacterium 1_1_47 cont1.15, whole genome shotgun sequence Length of sequence - 72094 bp Number of predicted genes - 66, with homology - 61 Number of transcription units - 32, operones - 14 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 22 - 97 86.5 # Ala GGC 0 0 + TRNA 132 - 207 54.1 # Glu TTC 0 0 + Prom 1455 - 1514 1.6 2 2 Op 1 1/0.400 + CDS 1535 - 2320 539 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 3 2 Op 2 . + CDS 2350 - 2883 555 ## COG0716 Flavodoxins + Term 2946 - 2987 4.6 + Prom 2995 - 3054 4.2 4 3 Tu 1 . + CDS 3085 - 3861 987 ## Veis_2606 hypothetical protein + Term 3903 - 3948 4.6 - Term 3894 - 3932 8.6 5 4 Op 1 . - CDS 3957 - 5210 1722 ## COG3069 C4-dicarboxylate transporter 6 4 Op 2 . - CDS 5149 - 5337 231 ## - Prom 5369 - 5428 4.8 7 5 Op 1 . - CDS 5432 - 6328 765 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 8 5 Op 2 . - CDS 6401 - 7342 1028 ## COG0859 ADP-heptose:LPS heptosyltransferase - Prom 7415 - 7474 3.8 + Prom 7350 - 7409 4.3 9 6 Tu 1 . + CDS 7431 - 9206 293 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 9250 - 9296 9.3 + Prom 9240 - 9299 5.3 10 7 Tu 1 . + CDS 9407 - 10939 1792 ## COG0471 Di- and tricarboxylate transporters + Term 10984 - 11022 7.6 - Term 10970 - 11010 4.2 11 8 Tu 1 . - CDS 11016 - 11903 750 ## COG0583 Transcriptional regulator - Prom 11934 - 11993 7.8 + Prom 11932 - 11991 8.1 12 9 Tu 1 . + CDS 12189 - 12956 754 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit + Term 12985 - 13023 1.2 + Prom 13090 - 13149 3.8 13 10 Op 1 33/0.000 + CDS 13297 - 14421 923 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 14 10 Op 2 35/0.000 + CDS 14484 - 15455 608 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 15 10 Op 3 8/0.000 + CDS 15458 - 16213 219 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 16 10 Op 4 1/0.400 + CDS 16221 - 16928 661 ## COG0500 SAM-dependent methyltransferases 17 10 Op 5 . + CDS 16981 - 17403 301 ## COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain - Term 17451 - 17488 7.1 18 11 Op 1 . - CDS 17506 - 18039 452 ## Rleg_1652 hypothetical protein 19 11 Op 2 . - CDS 18064 - 18369 360 ## Dred_1573 extracellular solute-binding protein 20 11 Op 3 . - CDS 18369 - 18929 522 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 21 11 Op 4 . - CDS 18862 - 19035 65 ## - Prom 19080 - 19139 3.7 + Prom 18741 - 18800 2.4 22 12 Tu 1 . + CDS 19013 - 19213 69 ## + Term 19219 - 19255 0.1 23 13 Tu 1 . - CDS 19159 - 20214 439 ## COG1672 Predicted ATPase (AAA+ superfamily) + Prom 20684 - 20743 7.5 24 14 Op 1 4/0.000 + CDS 20772 - 21134 219 ## COG0640 Predicted transcriptional regulators 25 14 Op 2 . + CDS 21131 - 22057 579 ## COG0701 Predicted permeases 26 14 Op 3 . + CDS 22073 - 22234 178 ## 27 15 Op 1 . - CDS 22356 - 22664 220 ## COG0640 Predicted transcriptional regulators 28 15 Op 2 . - CDS 22648 - 23199 381 ## gi|302860302|gb|EFL83379.1| hypothetical protein HMPREF0189_00457 29 15 Op 3 16/0.000 - CDS 23250 - 24011 619 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 30 15 Op 4 . - CDS 24026 - 26575 2041 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 26815 - 26874 6.8 + Prom 27320 - 27379 1.9 31 16 Tu 1 . + CDS 27412 - 27876 187 ## MAE_21710 hypothetical protein - Term 27983 - 28017 4.2 32 17 Tu 1 . - CDS 28043 - 30640 2232 ## Ent638_0501 outer membrane autotransporter - Prom 30808 - 30867 6.1 33 18 Op 1 . + CDS 31691 - 36058 2547 ## COG4889 Predicted helicase 34 18 Op 2 . + CDS 36112 - 36597 104 ## Rfer_1363 hypothetical protein 35 18 Op 3 . + CDS 36598 - 37269 338 ## Rfer_1363 hypothetical protein + Prom 37571 - 37630 3.2 36 19 Tu 1 . + CDS 37790 - 38089 148 ## gi|302860310|gb|EFL83387.1| hypothetical protein HMPREF0189_00465 + Prom 38106 - 38165 3.8 37 20 Op 1 . + CDS 38211 - 38471 221 ## Rfer_1361 putative transcriptional regulator 38 20 Op 2 . + CDS 38464 - 40971 415 ## Bpro_1919 hypothetical protein 39 20 Op 3 . + CDS 40978 - 41727 398 ## Rfer_1357 hypothetical protein 40 20 Op 4 . + CDS 41798 - 42400 285 ## Pnap_2655 hypothetical protein + Term 42494 - 42542 2.7 41 21 Tu 1 . - CDS 42812 - 44143 158 ## COG0582 Integrase - Prom 44170 - 44229 5.1 42 22 Op 1 . - CDS 44745 - 47678 2864 ## mma_3262 hypothetical protein 43 22 Op 2 1/0.400 - CDS 47733 - 48392 570 ## COG0546 Predicted phosphatases - Term 48393 - 48422 2.8 44 23 Op 1 . - CDS 48447 - 49082 826 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 45 23 Op 2 . - CDS 49175 - 50515 846 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 46 23 Op 3 . - CDS 50535 - 50834 292 ## COG3093 Plasmid maintenance system antidote protein - Prom 50929 - 50988 3.3 + Prom 50822 - 50881 4.5 47 24 Op 1 1/0.400 + CDS 50982 - 53849 3778 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 48 24 Op 2 3/0.000 + CDS 53833 - 54900 1236 ## COG1932 Phosphoserine aminotransferase 49 24 Op 3 3/0.000 + CDS 54911 - 56032 944 ## COG0077 Prephenate dehydratase 50 24 Op 4 9/0.000 + CDS 56029 - 57156 1360 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 51 24 Op 5 6/0.000 + CDS 57153 - 58013 867 ## COG0287 Prephenate dehydrogenase 52 24 Op 6 7/0.000 + CDS 58025 - 59320 1120 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 53 24 Op 7 21/0.000 + CDS 59320 - 59982 478 ## COG0283 Cytidylate kinase + Term 60003 - 60038 2.2 54 24 Op 8 16/0.000 + CDS 60076 - 61770 2313 ## PROTEIN SUPPORTED gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 55 24 Op 9 . + CDS 61788 - 62090 340 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 62119 - 62156 8.5 + Prom 62128 - 62187 3.0 56 25 Tu 1 . + CDS 62239 - 63408 1184 ## COG2956 Predicted N-acetylglucosaminyl transferase + Prom 63448 - 63507 5.8 57 26 Tu 1 . + CDS 63533 - 64429 973 ## COG0501 Zn-dependent protease with chaperone function + Term 64457 - 64482 -0.5 + Prom 64490 - 64549 2.3 58 27 Tu 1 . + CDS 64585 - 64746 78 ## + Term 64908 - 64936 -0.1 - Term 64894 - 64926 4.0 59 28 Op 1 2/0.000 - CDS 64948 - 66339 1585 ## COG0534 Na+-driven multidrug efflux pump 60 28 Op 2 1/0.400 - CDS 66356 - 68080 1549 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - Prom 68107 - 68166 4.1 - Term 68115 - 68153 8.4 61 29 Op 1 9/0.000 - CDS 68176 - 68472 282 ## PROTEIN SUPPORTED gi|33592360|ref|NP_880004.1| 50S ribosomal protein L31 type B - Prom 68559 - 68618 3.5 - Term 68478 - 68516 1.0 62 29 Op 2 6/0.000 - CDS 68623 - 69879 1759 ## COG1158 Transcription termination factor - Prom 69907 - 69966 3.3 - Term 69961 - 70006 8.5 63 29 Op 3 . - CDS 70017 - 70337 620 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 70513 - 70572 3.4 - Term 70616 - 70664 3.6 64 30 Tu 1 . - CDS 70684 - 70929 272 ## gi|302860338|gb|EFL83415.1| hypothetical protein HMPREF0189_00493 - Prom 70950 - 71009 3.4 + Prom 70899 - 70958 4.3 65 31 Tu 1 . + CDS 71167 - 71676 635 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 71695 - 71726 3.1 + Prom 71833 - 71892 5.2 66 32 Tu 1 . + CDS 71912 - 72092 196 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349835|gb|ADCQ01000015.1| GENE 1 486 - 1385 588 299 aa, chain + ## HITS:1 COG:mlr2197 KEGG:ns NR:ns ## COG: mlr2197 COG2207 # Protein_GI_number: 13472034 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Mesorhizobium loti # 51 296 43 285 298 208 39.0 9e-54 METRDTEQKEITEKFINQAIEGHRAHDLNWKRIPGFNVSVLEKDAVNRSCFYTLSMAVIF QGEKIVDVGDNQYQYGGGSMIVTSVEVPTSYRILNASPERPFVSASMKLDRALLAEIMGE ISGKKEFPPSEDSNAFCVAKTPVQISDCFLRLLRLAEHPEDMDFVFPCIQRELHYFALTD PQCSNLRELCTGGLPSNRVSKAVEWLKQYYKEPIRIQELAGMVYMSSSTFHNHFKNVTSL TPLQYQKRLRLHEAKRLMITESYNASSAAFEVGYESVQQFNREYKRLFGKPPVQDVSGS >gi|301349835|gb|ADCQ01000015.1| GENE 2 1535 - 2320 539 261 aa, chain + ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 30 250 21 241 250 139 36.0 4e-33 MTNTLKRRSVLVASAAALVGVSVEESQAKTSKAKDPDLDSVLERLLDQKERGATLSPVQK YCALLSCVTAQALPEAAEKIVLRALKEKVSPLEIREIVYQCAPYVGIGRVQETMEGVNDA FKEAHISLPLPTATTVTDKNRRESGEQMVMKLNSDRMKQILSQVPKDEYDLRVNDLYDFC FGDFYTRSGLSLKDRELVVFGAIATLGGCEAQLRSHIGANLREGTTKAQLVDALRVMLPY LGFPRTLNAMNQVSQMTKDSK >gi|301349835|gb|ADCQ01000015.1| GENE 3 2350 - 2883 555 177 aa, chain + ## HITS:1 COG:MA0407 KEGG:ns NR:ns ## COG: MA0407 COG0716 # Protein_GI_number: 20089301 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Methanosarcina acetivorans str.C2A # 20 176 8 179 179 90 30.0 1e-18 MCTAVGVSGLANAQADKKPKILVVYFSKTNHTKNIADTIARLTGADELRVEVVKPYPEAY RSTTEVVKKELEKGIVREIKAPEVDLSKYDVIIFGTPTWWHHVAMPLQTWIKAHPMQGKT IATYNTDGGGGTMHTSEDFEALLKGNKLLPHFTIFGTTDDKTPAVSKWLKGIGLLNK >gi|301349835|gb|ADCQ01000015.1| GENE 4 3085 - 3861 987 258 aa, chain + ## HITS:1 COG:no KEGG:Veis_2606 NR:ns ## KEGG: Veis_2606 # Name: not_defined # Def: hypothetical protein # Organism: V.eiseniae # Pathway: not_defined # 7 257 29 279 279 191 44.0 2e-47 MAIEYTGSLQGKVRAHTPETLAATWLNAYVVLPNADGAPKVGTVEEFKGETKAYPAVVFC HGSSGVNPQIKIFAQWLADALRVAVVVPDSMQTEDRLTYSSPVPAADYEIIHKMRSQELA LAMMEIKHAPWFDGRAIIAGTSEGGVTAARYQADEKMIQEKGRMIFSWSCEDNYHVESHN THIPDNLPVLNVMSATDKFFSQSNSYLDNPEALGYAGKVLANNPNAEIVLLPGAPHTLMN LPQARDAVQAFINRVLRS >gi|301349835|gb|ADCQ01000015.1| GENE 5 3957 - 5210 1722 417 aa, chain - ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 3 411 43 455 462 233 37.0 6e-61 MNGATNFLPKNATATGLLGFDFFELFRAICRTQIAGVGFIILVSGGFAQYMKDVGASDRF VTVCAKPITLLKNPYLILGLVFIIGHCLGLVITSAAGLAMLLIVTVYPLIIRVGCSSLSA AAVVASVLCVGYAPASGVAVMAAELVHLDPVEYLVSYQLVMAAPVVLVMAITHVIVQRYF DKKDGVHGYVADFAELEAKRKELEKTPLIYACMPVLPLVLLLIFNKMVYKTITMNVATAM FLSWFVCFLVDLLVRREAKKSFDLSFSMFKGMGSILTSTVGLIFVAAFFAKGLQQTGLIT YLIDVAKNCGLGVTGTGVVLSAIIGVVTVLTGSGVAAFTSLAHVIPDVAQHLNSNGIAIM LMMHTASEMLRALSPVAGVIIIVAGFAKVSPFAIIKRTAIPCVVGYITMLIIVSAIF >gi|301349835|gb|ADCQ01000015.1| GENE 6 5149 - 5337 231 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQAISLWLAAAIVILTGWAIVKKYQVNMVLFIAGLLLKHHRCYERRDKLSSEECHCHRPF RL >gi|301349835|gb|ADCQ01000015.1| GENE 7 5432 - 6328 765 298 aa, chain - ## HITS:1 COG:RSc2225 KEGG:ns NR:ns ## COG: RSc2225 COG0697 # Protein_GI_number: 17546944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Ralstonia solanacearum # 4 295 19 310 324 130 30.0 3e-30 MFAQSLWSLAAAAFFSMMAACVKYCNDVFGPLELVFYRSLFTTLFVFITVSLRGETLKTQ YPILHLRRDVLGFASVAIWFFTLGMLPLGTNITLTYSTPLFLALNFILLALWKKEQPEWP LIGSILLGFVGIVVVMRPSFLSGDAVPALLCLFVAFIDLFGYWQIRFLGRVHEPSWRVVF YYSLFCTVGALLGVLFFEDGFHMPNTRAAIAAFLMCLLATAGMLASTRAWIGGNMLLVSC LGFSAIPFSELIGVFFFKNIPDMLSLIGMTIVAAAGMIATVYTKKAEKAASSSEQKTR >gi|301349835|gb|ADCQ01000015.1| GENE 8 6401 - 7342 1028 313 aa, chain - ## HITS:1 COG:HP1191 KEGG:ns NR:ns ## COG: HP1191 COG0859 # Protein_GI_number: 15645805 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Helicobacter pylori 26695 # 4 289 11 304 349 73 26.0 4e-13 MATLFVRLPNHVGDAVMTMPALNLLEAAGFKLYLIGKPFVGELFEGTNRRFDPIEGNLLD DIKRIRDLAASVKNPRGILMPNSFGSALLFKSAGIQSTGLATDGRSILLEHAIPEPPRMH EVERFWYVAYEALKAMGIKPPYTKLTKRINMKLAARNEAGARNLAAKIGLPKRYAILAPI AKGRHEGKEKYWRHFNELCKPLRDRGIEPVVFPAADEAEAAKAACPDATIYEPTSLGNFA ALCEKAAIVIANDSGVSHIAAAVGAPQVTIVGVTDTDRTSPWNEKNVIVGRKGRWPEVDE VITAIDDVLKTKN >gi|301349835|gb|ADCQ01000015.1| GENE 9 7431 - 9206 293 591 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 342 565 132 353 398 117 35 2e-25 MKSVKIKKEPLMRLFAYLPPYKFYIFLALIAMVAAAAGSSLMALLMGKLTDLGFYQKNGL VAIWAPIALIGISVLHGGGQFCSSYILQKVSQEILVKLRSLMFDHMIRWPEEVVQSQESG RVVSRFVNEASQALSGASQVLTVLVRDSLQVAALLCVLFWHNWQLTLVTFIVAPILIYIL RTVSKRLKKLTSDSQVTFGQILSQLNETYRSERLIKVYNAYKFEEERFGHINRRLKGLTM RQQIVKGLGTPATQLVSICGVAIVVCVALLQAQKGQLSLAEFVTYISAMLLMMPAIRKLA GLNGTIASMGAAAESLFEMIDIPLEKDPGSKSIERVKGNVEFKNVWYKYPNALEPSLKDF TLKAEAGKMIAFVGASGAGKSTIINMIPRFMVPTKGEILFDGIPQNEMTLESIRRQVAIV TQEVMLFDDTIVANIAFGAGRPVTEEEIMQAAEAAYLKPLIDSLPEGLQTRIGEGGSKLS GGQRQRVSIARALLKDAPILLLDEATSALDTESEKYIQASLDKLREGRTSFVVAHRLSTI VDADMIVVMDQGAIVEAGTHFELLAKDGPYARLYKIQFNHQKPEKSEAQKA >gi|301349835|gb|ADCQ01000015.1| GENE 10 9407 - 10939 1792 510 aa, chain + ## HITS:1 COG:Cgl0226 KEGG:ns NR:ns ## COG: Cgl0226 COG0471 # Protein_GI_number: 19551476 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Corynebacterium glutamicum # 48 493 69 511 527 320 42.0 4e-87 METPLQMGSFSRQSKTIALFAAPVLALLLYWVLPDAYVNGAGASVPVSHAAKACLAILLW MALWWFTETVPIAVTALLPIILYPLCDVTTLAKTLTPYASDTIYLFLGGFLLAAGIQRWG LDKRIALKTMQIVGTSPGAIIAGVMIATGFISMWVSNTATAAMMVPIAIAVMSVVRQNSD SPTITKGERNFGICVLLAVAYGASIGGMGTIIGSPPNGIFVRFVQQTYGVDVSIVQWMKV GMPVVLLLMPLSWLLLTKVLFREQIQKIAGGREWIRTELKNIGKPTRGEISVLIVFICAV VLWCLGSQIRSFTLENGVRPFRMVSDAVIAMAAGVSLFCIPVNFSRGERALDWKHCDNIP WDVLLLFGGGLSMAACIQATGAANLIAAQATSFVGLPPVLVILGVATLVIFATEFTSNTA LAATMLPLLAAAAPVLGIPTEQVLLVTTIGASAAFMMPVATPPNAIIFGTGRIQIGEMIK AGFWLNVISIIVIAGVCMALGDVLQLPMPK >gi|301349835|gb|ADCQ01000015.1| GENE 11 11016 - 11903 750 295 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 289 1 287 291 169 30.0 6e-42 MDLRVLMSFVTVCRLGNITRAAEALYISQPALTRQIQELEQELGCKLLVRSTRSLSLTEN GYLFLLRAQEILDLAKQAKTELSENGDILHGVVRVGIVESRIMDYFADAVVQFNQRYPHV QLEVYSADGDDLKRYVDENKLDMAILIEPVESAKYTKIPIDVIEKWGLVVRNEEVPIKKK TLSYEEIIERTLILPRRYIVLSEISSWFKVPESKFKVAAYHNLASNALTMVEKGIGSLLC IEGSFTNRPKPNLRFLPITPERTTSHVAVRKKNRKLSKPCEIFWSDIEQYFPVQK >gi|301349835|gb|ADCQ01000015.1| GENE 12 12189 - 12956 754 255 aa, chain + ## HITS:1 COG:MA0409 KEGG:ns NR:ns ## COG: MA0409 COG0599 # Protein_GI_number: 20089302 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Methanosarcina acetivorans str.C2A # 53 254 47 247 250 163 40.0 3e-40 MVLNRRKVLLSATVGAAGAVMTNTVSAKERNLDPDMDAIIARMMNVTKRATTLATNQKYF VLLATCAAQGLSEEAEGVTAAALKAAVEPIAIKEAVYQTAPYVGIGRVKEALEGVNKALK EAGVRLPLASQTAVNDQNRLAKGIEVQTAIFGDAITQMHKNTTEPMKPLMINDLSGYCFG DFYTRTGMSVKDRELVVFAAIAALGGCEAQLKAHADANLKEGATKQNLIDALQVAVPLNG FPRTLNAVTVVNSIA >gi|301349835|gb|ADCQ01000015.1| GENE 13 13297 - 14421 923 374 aa, chain + ## HITS:1 COG:MA2148 KEGG:ns NR:ns ## COG: MA2148 COG0614 # Protein_GI_number: 20090991 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Methanosarcina acetivorans str.C2A # 23 368 41 385 389 185 31.0 2e-46 MLRKLILALSFSSLAAFSGSVLAAAFDITDIEGRKVHFEDQPKTFIVANYIANFMMVGGA ASLEKVVALTKDGWEDTRYGEYQVFTKSFPKMKDLPSIGGYHDDILNAEKILSLHPDVLL IGRTQYAENSRRIKTFEKAGIKVVVLDYHAMTTVNHTLSTEILGKLLGRERIAEAQNKTY KEALDHVYSTIVKLPDDQVGTKVYMETASKGLARYGNSYNKDVLWGAILKNIKAANLAEN SPQPYMALDKEYVISQNPKVIFIGGSIWRNKSEGDQMRMGFTVPESQAQERLANFTKRPG WNMLDAVKENRVYGVDHGSLRNMADYTFTQYMAKVLYPEAFKDIDPVGNLNNYYKTYLPE LKYDGTFMIHLNQK >gi|301349835|gb|ADCQ01000015.1| GENE 14 14484 - 15455 608 323 aa, chain + ## HITS:1 COG:AGl2865 KEGG:ns NR:ns ## COG: AGl2865 COG0609 # Protein_GI_number: 15891544 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 322 27 351 355 188 37.0 1e-47 MLVGLILSVLVFLDIQVGSSSIAFKDLVDAVLKGPAGGSSASFIVWEIRLPMTFTCLFVG ASLSLAGLLIQTITNNPLASPYTLGVTAGASFGAAIAITTGFALFGQIWLGVSLAALVMA LTVSAFIFYLGSKRSLTATTLILVGVIMNFFFQALQQYLQYRASPEIAQIISGWTFGNLQ RSSWISAGVSSTCWTIVLLISFCYSWKLTALSDGTERVRGLGINTDQLRMFVFTVSSVLV ASAVAFIGTVAFVGLISPHCAKLLLGDDQRFLIIGSSMVGSALMLAASIISKLMSEGATL PVGIVTSIVGVPFLFFLLLRSRE >gi|301349835|gb|ADCQ01000015.1| GENE 15 15458 - 16213 219 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 208 2 215 245 89 28 7e-17 MLKLKIEGLSCSIKNKEILKDITVSFQQGEMAAVLGRNGAGKTTFIRCIANLIAHQGSIV LEEDGKKLGRSSIAYLPQLEKITSSLTTFETILLGLTKTLSWKVSEAQLAKVSQVIRELK LDAFANTPVRSLSGGQKQLVFLAQSFVSEPRLLLLDEPTSALDVRHQLVVMETVHRYCKK RNAVALYVIHDLMLASRFSDAVLFLHNGMAHAFDTPDAVLNSETIDPIYQIESLIEKNSR GLTTMTPIKPL >gi|301349835|gb|ADCQ01000015.1| GENE 16 16221 - 16928 661 235 aa, chain + ## HITS:1 COG:MA3459 KEGG:ns NR:ns ## COG: MA3459 COG0500 # Protein_GI_number: 20092272 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Methanosarcina acetivorans str.C2A # 1 206 1 213 249 137 36.0 3e-32 MNNLEKIREYWNTRSEGYRQQIEKEREEHKDEFYKEYFRQIPEVSKVLDIGCGPGFFSLL LASLGMNVTAADYSEGMLEKAKDLLNRNGYHDVEFCRADAQHLPFADASFDAVVSRNLVW NLEDPEAAYKEWLRVLKPGGKLFVFDGNHYCYLYNAEYASIQPKVDASSNHVLLGIKTNV IDDIARDLPLSRQVRPQWDEEVLGRLKACAVKSEVLLWEGKKMRLPVRFAVTAVK >gi|301349835|gb|ADCQ01000015.1| GENE 17 16981 - 17403 301 140 aa, chain + ## HITS:1 COG:BMEII0486 KEGG:ns NR:ns ## COG: BMEII0486 COG0864 # Protein_GI_number: 17988831 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain # Organism: Brucella melitensis # 6 136 20 151 151 105 44.0 2e-23 MNPQIMQRISITVDESLAQAFDELIAKRGYQNRSEAFRDLLKKELAQEALVNPSQECVAV VSYTYDHRKALLSKRNVDHQHEHLDMVISSMHVHATHDTCVEAVIAKGSYDKLKVFCENT IAEKGVGCGEINYLPIHEHK >gi|301349835|gb|ADCQ01000015.1| GENE 18 17506 - 18039 452 177 aa, chain - ## HITS:1 COG:no KEGG:Rleg_1652 NR:ns ## KEGG: Rleg_1652 # Name: not_defined # Def: hypothetical protein # Organism: R.leguminosarum_trifolii_WSM1325 # Pathway: not_defined # 23 163 21 157 168 69 33.0 4e-11 MLNEEIKVTENEGKTVTVLTLEDCEKYHGLKRYGGLALCFRVMKFALDRLVPEGEAARRK LITFKTAFDGPGITDSAELIGRCVTRKRFMALPTDGIEAPECIWGKLYFEVRYGKKLMKI SVRDGIISPEFLAAGRKFYSGTATPQETEIWIGFKGKLYDAVVNSKLEDILKTEIVG >gi|301349835|gb|ADCQ01000015.1| GENE 19 18064 - 18369 360 101 aa, chain - ## HITS:1 COG:no KEGG:Dred_1573 NR:ns ## KEGG: Dred_1573 # Name: not_defined # Def: extracellular solute-binding protein # Organism: D.reducens # Pathway: ABC transporters [PATH:drm02010] # 1 96 229 324 326 67 33.0 2e-10 MTTTKQFVEEHLNIVKRVDKVYAESLQWMKDHPAETAEMGAKEHGISVEDAKTLMERSHY FDKMTTKDLEDLKVNQKFLRDNGMMRNEVTVEELVLPVEME >gi|301349835|gb|ADCQ01000015.1| GENE 20 18369 - 18929 522 186 aa, chain - ## HITS:1 COG:AGpT119 KEGG:ns NR:ns ## COG: AGpT119 COG0715 # Protein_GI_number: 16119873 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 19 168 23 172 320 70 33.0 2e-12 MRLTSLFVAFLMTASTFSATAAEPIKELNISYVKPPFVLQLLVMKDHKLLEKEFQADGIK INWHNMGTSPQAARAMGSGSLDIAGNMNTAALLMLNSEGLPVRVVTGTAHPTSNFAIVSK PGTELSVRDLKGKQVVGPKGTFLHQLLVAALEKEGMKESDVQFINMSIPKALKPSSMQKD WWNPLL >gi|301349835|gb|ADCQ01000015.1| GENE 21 18862 - 19035 65 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIAILITIIVLVWNGLIPVERTSTLKPKQSLSGENHEIDISVCCFLDDCVHVFCHRS >gi|301349835|gb|ADCQ01000015.1| GENE 22 19013 - 19213 69 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVMRIAIIKKGKNVCQLKIISSLNRAYLTDWITLVNVLNLPLYKFKTLVQFFISSKERPL KDTENF >gi|301349835|gb|ADCQ01000015.1| GENE 23 19159 - 20214 439 351 aa, chain - ## HITS:1 COG:PAB1371 KEGG:ns NR:ns ## COG: PAB1371 COG1672 # Protein_GI_number: 14521702 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Pyrococcus abyssi # 3 326 105 429 472 130 28.0 4e-30 MQLSKTTPLILVFDECQELDYVAPKFWSELQNVWDKNKNESRLLLIMSGSIISAIKHIFS DANEPLYGRTDLLLKIKPFSCHTIRHYLEENNPDFTAEDLLMFYAMTGGVPRYMELLTSS GCSDVKSFKKFLFSQASSWYRQDGHVILGNEFRMESSAYFSLLRAIAYGKTQWSELQNEV STNLAPYMSRLETQFNLLKKNYPFGKESSGRGTRYLLTDEYFRFWFKFIEPMTFASLYES SQWNLSEGLFDKAWPDFCGRTLENWFLKDYSENGAWTAVGQWWDKRGENEIDLVAVNELV DKIQFAEIKRNPKKIYLEKLQEKAEVFLKNNPKYQKFSVSFKGLSLEDIKN >gi|301349835|gb|ADCQ01000015.1| GENE 24 20772 - 21134 219 120 aa, chain + ## HITS:1 COG:PA2277 KEGG:ns NR:ns ## COG: PA2277 COG0640 # Protein_GI_number: 15597473 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 12 110 7 104 116 58 32.0 3e-09 MVLTSLEQSLLVFKVLSDPNRLRLYWLLTHVGAAICVCEAMRVLDLPQYETSKHLKQLRE AGLVEAEKRGRFVYYKVKTPVSSFVQGIAQAVNAIDPESFKEDKKRCKEICCCFSDEQEK >gi|301349835|gb|ADCQ01000015.1| GENE 25 21131 - 22057 579 308 aa, chain + ## HITS:1 COG:MTH894 KEGG:ns NR:ns ## COG: MTH894 COG0701 # Protein_GI_number: 15678914 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Methanothermobacter thermautotrophicus # 14 304 34 324 327 147 29.0 2e-35 MISNIDWSRFLSEFTYIFFELIFLFFTISFLVSLAQIFISQKRIEGWLNRPNKVISAVLG ACIGLVTPFCSCSTIPVFVGLMKSRAPFAGAVSFLLTSPVLNPAIITLMAAFFGLKATVL YTLFTFVFAVSIGLLLDALGFKRYVYDVTVTGGKTSSEAWHSFTGTFREKFWHAVVLAFG DSLGLLKKVFPYLLFGALVGGFIHEALPMDIVEKFAGVGAWWAIPLAALVGIPLYIRTET MIPIASILYGAGVGSGVLIALIIGGAGASIPEVALLNSIFKKQMLIAFLLSVFSVACVTG YLFNYFSF >gi|301349835|gb|ADCQ01000015.1| GENE 26 22073 - 22234 178 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAEKESFFSRFFGNKKKEGCCCQLNIVKNEEKTESVPKKSDEAKEVGGEKDKK >gi|301349835|gb|ADCQ01000015.1| GENE 27 22356 - 22664 220 102 aa, chain - ## HITS:1 COG:CC3028 KEGG:ns NR:ns ## COG: CC3028 COG0640 # Protein_GI_number: 16127258 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Caulobacter vibrioides # 14 83 57 126 151 59 38.0 2e-09 MAQFPEIYTEQAKIFKAIGHPARLMMVEALLEGPKTVSELTAIVQLEMPTVSRHLNCLKE AQVVKSEKKGNSIIYSVELTCLKNFLHCSRSVVVMKKSKTLL >gi|301349835|gb|ADCQ01000015.1| GENE 28 22648 - 23199 381 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860302|gb|EFL83379.1| ## NR: gi|302860302|gb|EFL83379.1| hypothetical protein HMPREF0189_00457 [Burkholderiales bacterium 1_1_47] # 1 183 1 183 183 325 100.0 8e-88 MQTTPLNLILLGLFEPEQELRELHVFKKAAENLDEDLARRAVLLDQLYTQGTASSKAFKE MLLDYTRLFLSPGTPLAKNYLTCWKTKLGDNILEEYLSYLEKKGFETEKDIKELPEHIVP VLEVYELLDKEEKPEYFEKFLSKFILDWSKLLEVEARHGFYKNLGKFFTEWAKLEAKKNG AVP >gi|301349835|gb|ADCQ01000015.1| GENE 29 23250 - 24011 619 253 aa, chain - ## HITS:1 COG:AF0175 KEGG:ns NR:ns ## COG: AF0175 COG0437 # Protein_GI_number: 11497792 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Archaeoglobus fulgidus # 1 246 2 230 251 162 38.0 8e-40 MKFGMIIDLNLCSSCGACALACKAENNTRTRGEGQSFNWADFLQETKGTFPNSTQVAVPV MCNHCENPQCVKVCPTGAMFISPEGVVLHNDEACIGCRLCQNACPYSSAELGPESLDGKS YSVISFNPKGVDPRGDTATRPVLIDGVTGSALELTKKAGALPAYANLFKAGDTAAQRKEG VVEKCNLCYHRTSNGLNPACVDACPAGARIFGDLDDPKSAISAKMKASKVWRLQEDKGTN PKVFYVGQFSPRE >gi|301349835|gb|ADCQ01000015.1| GENE 30 24026 - 26575 2041 849 aa, chain - ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 788 1 709 758 141 23.0 5e-33 MKLTRRVFIELAGSSALMASAPSLLAQGVTVKRLPLPCSPAQGRWIGSACQGCTQYCAIE VFNQNGRATRVRGNQHSQGNHGFCCPRGHLIPQENYDPDRIKQPLKRTNPQKGRGIDPKW IPITWDEALDIVADKMMELRNAGEPERLLYLKGRYGNTSHALLYGTVAKLFGSPNNFSTS ALCAETEKMGPGYTQGLFSYRDYDLGNSKCVVFWGTDPFASNRQVPNVISRLGTLQKNGT LITVDPRLSTAAAKSKEWLPLLPGTDGALANAIAHVLLTEGLWNKEFVGDFVDSKNQFIA GKTVKPEAFKENNTLGLVTYWNEEAKDWTPEKAGKECRLDPEQIRRVARTLGKAAPNVIV WMGPGVCMNPRGTYSAMVVHALNGILGSVDNVGGTHDPVKALTDKYPSMDKYVDELAKTH GKGKKIDGRGDKDMPAAMKAKLGSGVVTNNIANYMLEHPDFIKVMISSWTNTPFAASDGK RWEKALSNVPFFVHMVPFPSEMTQFADIVLPSTFNAAEGMGAVTGFGSMHAWTSLQQPTC DRIWDVKQEENEVTWLLAEKLAKKGWPALLNYYANEFADPETGAKPTNEKEFQLITTKIA SAPCWLHGSKPIPGDQINGWEDFRQRGMHNSAPQTYKKHWGCKFPTPSGKFEFVSGDLKK VLETHAAKYNSTPDQILELCNYQARGIKGWMPHYEAPLRHGDQQQFPFLFIDHKSRLNRE GRSANLPWMQEFKKCDAGDRSWGDVLKINPIDAKALGLKDNDLVEISSPVGTIVTEVKLW EGVGPGTVAKAYGQGHWAYGQIAAKEYGKTPRGGNNNEILVDDYDRLSGTSCRNGGYTRV SIKKVSSNN >gi|301349835|gb|ADCQ01000015.1| GENE 31 27412 - 27876 187 154 aa, chain + ## HITS:1 COG:no KEGG:MAE_21710 NR:ns ## KEGG: MAE_21710 # Name: not_defined # Def: hypothetical protein # Organism: M.aeruginosa # Pathway: not_defined # 22 154 35 155 199 62 30.0 7e-09 MNRGKLFVIFDGKHCIVTIVWLHPQEFFDRATVLPLPYVTAGDDVLEYLRDSIREYLAQS YELRVLMPENELATIREKIPNGAEKVFHEYFVLQEEKSHRALRQQFTYGAIPLAYGCLFM ILCMVFRQFFFGFPEDSFFNAVREGLLVIGWVAL >gi|301349835|gb|ADCQ01000015.1| GENE 32 28043 - 30640 2232 865 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0501 NR:ns ## KEGG: Ent638_0501 # Name: not_defined # Def: outer membrane autotransporter # Organism: Enterobacter_638 # Pathway: not_defined # 387 865 864 1371 1371 105 24.0 1e-20 MKTKFTTHKKQLSALVCATLLGFPWGGANAITAGVVGNNSEEGFTSASENISGNIGIYAV GTKASAIAENITISSDMYAALYAYNGGVINVGGDSTKSVIITSTSDGINAVNLEKKGAAF VSVKASESVSIVSDTFALWAQNGTQSTQAPESHSSITVEAPTISIEGKEEAIVAFSNGEI NVTGNATIKGGSALIDTRGYASVNINRDNSNATTVLEGDIVFETPNVEGGDGNFSGNLID AFVNINLSGEGSSWTGRSYQSYKYVDASNGTVAVVTSEIGENREYFGQVSGLVLSVAKGA KWETTGDSFANVLNMDSGNLSLAADSVLHANDFIVAGDSNTINFGNGANINGTIEDQGTL YMTGDVSSFTGVLNVMGKASVGLTAEEASETLNPMQGSVLVVKAGTTLNGSTSVGSSASA TSNGSSLSVLSDGTLAIVATDDYTEGTPLVTVGTASTEDGSTVKLVNAVKIADGTTVFAT SDGSAPSEYSLVTDNLLKVVENNQIVSQSASTALGGNVLTPNVINEALTASGLGAERVVA LTTDTTAAQAVSALNNIALMGTASGAQTAAINAANIQLDVIDSHGSVLAGYAHEKSGADL WIDLNGSFSKANRFSAGSTTYGYKSDLAGVTIGSDYAFGNGYATGVSVSFGTGSVRGQGN GAGIKNEVDYYGVNLYGVWSNEYFNMIGSVGYLQTKNEIKSQGYKGKPDVKVVSAGVRLE KPLLLNESITVTPHVGVRYKHINMDSFNAGGFNYDSEKANLVEVPFGVAFNANLKAPCGA EVKPFIDLTIAPNFGDRKVTNKVALTDSSASDSFEARIANNSMYNAKLGLNAVKGNHSLG ISYGIGSGSYGRVDQALQAKYRYSF >gi|301349835|gb|ADCQ01000015.1| GENE 33 31691 - 36058 2547 1455 aa, chain + ## HITS:1 COG:MT2082 KEGG:ns NR:ns ## COG: MT2082 COG4889 # Protein_GI_number: 15841510 # Func_class: R General function prediction only # Function: Predicted helicase # Organism: Mycobacterium tuberculosis CDC1551 # 1 1445 194 1598 1606 1083 42.0 0 MACGTGKTYTSLKIAEEQAGAGKLVLFLVPSLSLLSQTLTDWKQQCIYPINAFAVCSDSS TGKAGLEDLESLTVGSELAYPATTDARSLCKQIKAAKEKKDAMTVVFSTYQSIDVIHQAQ TQEIDPIGEFDLVICDEAHRTAGGHFTDEKEAVFTRIHNNDYVAAKKRLYMTATPKIYGS DAKKQNEDGDIVLYSMDDEEVYGKTFHSINFTEAVRLGSLVDYKVIVLTVSESLIGDKNN PEELILGAEGGLSVSNAAKVIGCWRALSKRDLQGEVSLGNDLQPMRRAVGFAQVINPSDK YDKVSSKQFTAEFQNTIERFKDKLRKETKYLNQEFFNEQNSLVCDTRHIDGSMDATEKAN RLEWLRADTEEGHCKILFNVRCLSEGVDVPALDAVIFLSPRKSMVDVVQTVGRVMRTSKG TKKERGYVIIPIVTPAGIPADYVLDNNKDFQTVWQVLRALKSIDEDFGSMVDGQLKTINS EKLEVICLTDKKFTRKAATGGNVGGIKRRHSKKRKGDGPKQMELSLGRDMILEEDIRARI VKKVGNRKEWSDWAEDVGRICQEQVKHIEAVLDKPENEASRKKFEVFSTELKNTLNGELS REEVLDMLGQHIVTKPVMDALFSEFPFTEKNPISRAMTQMLDALDKEGLKSATKLLEGFY NSVRVRAKNIKTAEDRQTVIIELFDKFFKFAFPEMRDKLGIIYTPVPVVDFINHSVADIL QKEFGTTIASPNVHILDPFTGTGTFLTRLMQSGLIPADKLSEKFKNDIHAHEILPLTYYI ASINLEATYYDLVSNQEYEPNPVMIWTDTFADHDAKTLFSTSLAENNARLAKTEELDIRV IVGNPPYSVGQERQADNNENERYDKLDSRISKTYAGRTDVTLKNSLYDSYIRAYRWASDR IKDKGVIGFVTNAGWIESNSADGMRKCMSEEFNSIYIYHLKGNQRTSGERSRKEGGKVFG EGSRAPVAIVLLVKNPDDKEKGKIYFHAVDDYLTREEKLNQLVKAKSISNIQWQRIYPDK HGDWLNQRDDSFAHFIKIDATKFKKQKTEVSVFPPSVNGVKTDRDAWVYNSAVIALSESV RRLIKGYEETVKLSNDMSVEEAVKQVKLPWTRLLKTKLEKNALIIFDSKKVRNSIYRPFI LQRLYYDKKGGVIERPGRWDTLFPTVASENLAICVTGIGNKAFSCLMTNKIIDLNALEAG TQCFPRYIYKSITDSLQNSEDDLFANESEAVTTDGFVKEDAINDDALKHFQEVYSGNPIS KDDLFYYIYGILHSQDYRTKYANNLSKELPRIPRVATYEDFKAFSEAGRKLADLHVNFEK QLRYKGVTVQKREGCSFRVTQMKWGKIAGKTGNAAKDKTRLIYNEDITIENIPLEAQEYV VNKKSALDWIVERCRITVDKDSGIINDFNKYGEEMGDPTYLYDLFLKVITVSLETMKIVK ALPALEIHRLDKESD >gi|301349835|gb|ADCQ01000015.1| GENE 34 36112 - 36597 104 161 aa, chain + ## HITS:1 COG:no KEGG:Rfer_1363 NR:ns ## KEGG: Rfer_1363 # Name: not_defined # Def: hypothetical protein # Organism: R.ferrireducens # Pathway: not_defined # 1 161 14 178 418 81 33.0 8e-15 MPADLIHEYFAARHGITFGVPEEGSEQTEFDRQLADWKNLPQEIKVSAERDFIKINDMAD EAGIRAILDEAEFQDGGHEKILAQWEDFPLNRRVFYTFLHRSELWDNACLFHHSDSLPQN WWKKRKGFGHLKAETAPEAIEALAKRLGDYFFEHDGKGKNC >gi|301349835|gb|ADCQ01000015.1| GENE 35 36598 - 37269 338 223 aa, chain + ## HITS:1 COG:no KEGG:Rfer_1363 NR:ns ## KEGG: Rfer_1363 # Name: not_defined # Def: hypothetical protein # Organism: R.ferrireducens # Pathway: not_defined # 1 219 180 398 418 166 40.0 6e-40 MEVLRRRNQDYFFAYPEDYSREVLEWNGNKLSARVAKQAYTVIFIYVQDEGTLDLMCKGN KTRIYEIQELFAQTILGIEKLPENERDSRIYELAPLLKPNFKFRYEPSSIIQSVAISKIR LTRRYTWDSRVVLESPMWKKQPEKIYEILESFSKACPLDSFFVTQAELKVVVLNEDGKEV TETIRLTTPNLCNLHREGTHAVLRKMLIDSEIEPRDLSDGGQT >gi|301349835|gb|ADCQ01000015.1| GENE 36 37790 - 38089 148 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860310|gb|EFL83387.1| ## NR: gi|302860310|gb|EFL83387.1| hypothetical protein HMPREF0189_00465 [Burkholderiales bacterium 1_1_47] # 1 99 180 278 278 163 98.0 3e-39 MIGFDGHSYVLQSAQKQYLLCADKSDESRDRRRARLLATVDYYKQIGISPIYETIAKEEG VSLYAIKNELKEARKDRTILKLKETYLKELRERHFGLSE >gi|301349835|gb|ADCQ01000015.1| GENE 37 38211 - 38471 221 86 aa, chain + ## HITS:1 COG:no KEGG:Rfer_1361 NR:ns ## KEGG: Rfer_1361 # Name: not_defined # Def: putative transcriptional regulator # Organism: R.ferrireducens # Pathway: not_defined # 1 79 1 79 85 65 45.0 6e-10 MALKILRASQAQEATGLPRSSFYSQVAKGLLPPSIQLGPRSVGWVETEINAVNVARILGK TDEEIKSLVMRLVKERVHLAEGAANV >gi|301349835|gb|ADCQ01000015.1| GENE 38 38464 - 40971 415 835 aa, chain + ## HITS:1 COG:no KEGG:Bpro_1919 NR:ns ## KEGG: Bpro_1919 # Name: not_defined # Def: hypothetical protein # Organism: Polaromonas # Pathway: not_defined # 349 812 114 581 632 342 41.0 6e-92 MSSSVSTLSPAILSSQPIEVSNHEFLESIFCKASELSGTDSAPVCVSFSCSPAVACPADW YGFAWNKVNEPKDIRCNSYFSISAFRSDEHGKYRRKKSQFVGQFAIAFDDVVAQTVAGKT KAQIPWSQIKLAPSWVLETSEGNFQIGYILAEPITDKQTADVLSKAIIRKGLSDPGAGGP STRLMRLPYASNTKTELPFRCLMRQWEPKLKYSLRQFTDAYDISLSETKKAKAPLPAKAK TVQTAYDGNAVWKPKPSVNIVVESLRSRGLIKSEIESGKYDITCPWTEEHTDQVDSGACY WEPDDEHPIGSFKCQHAHCQERNISDLLEFLGIEPEEAYMKDRIFLNPGEINRIVEASER ILAETGLFYQRAGRVVAVYPQQGAAALKEVNIHDLTLEMAKLSRWQRYDGRAKRCVPTDP SAKCLTALLESQNHKFLPEIEAIVRQPILQEDGKIDLQRGYHPKTRLYCSYDPEKYQLEE KPFLGDALKALAELRKLLEEFQFEDSSDESAALCAMLTASVRSLLPFAPMFLIKAHQPGT GKGVLSELIFLMATAEKPSPIAFPKDSAECEKLLLAELLKAPSVLFFDNLTSDLYPHKYL CSAITSETLTGRVLGESRTATVGTKTLILANGNNVTPVGDMTRRVVPICIDTKEEIPASR IFKNPNLLQQVRESREHYVSCALTIISAWINTGKPHTECPNLNSFEKWSEWCRQPLLWLG LPDPVKKVFTAMNDDPERIQVGRVFNGIRREFETALFSVKELSERVSRSVDSELLREPLE DIGCFDGCIVNRNRLGWWLKKKVGWTVDGIRLNLVSVDAHTKQPKYQLSICKHQE >gi|301349835|gb|ADCQ01000015.1| GENE 39 40978 - 41727 398 249 aa, chain + ## HITS:1 COG:no KEGG:Rfer_1357 NR:ns ## KEGG: Rfer_1357 # Name: not_defined # Def: hypothetical protein # Organism: R.ferrireducens # Pathway: not_defined # 3 241 18 259 265 141 35.0 3e-32 MEKTYQVRRLNAVKHGILSKEAVLPHESKDEFEDLLAQYEADFVPANATENTLVEELATI VWRKKRLLKAENAKINNGLSSALNHSQRLLNSTAPLSLHIEDEKIEVREFLKLSAEELEE KRKGLETEEQKRRQAEETLSKGGRSCTKRAAECLGDFLLNLWYSDEYAQHDRYGLSVFLS GKAKTAIEQTLAVVNHVSEIKEQALGNAINQVNFESFARYEAHLDRKYERTLAMLIKLKS LSGNAPQAS >gi|301349835|gb|ADCQ01000015.1| GENE 40 41798 - 42400 285 200 aa, chain + ## HITS:1 COG:no KEGG:Pnap_2655 NR:ns ## KEGG: Pnap_2655 # Name: not_defined # Def: hypothetical protein # Organism: P.naphthalenivorans # Pathway: not_defined # 1 200 1 211 212 101 32.0 1e-20 MGGYGSGRVGERELITNLRFLNVRWLNKQGLLKSKGVKTLSWSRNGKPWGKMEVLVEEDR IRLIYKVSRNDGPWEDKDVEIKLLKTSCRFGGFQYWFECPVCRRRVCCVYLSNTWCCRHC GHLAYPSENEDEIERLRSKALKLKEKLRGEYWIKPKGMHQKTYDRLREAFLEAEAKADDA FDEKLQQLDQRLMSFGKFHP >gi|301349835|gb|ADCQ01000015.1| GENE 41 42812 - 44143 158 443 aa, chain - ## HITS:1 COG:RSc1896 KEGG:ns NR:ns ## COG: RSc1896 COG0582 # Protein_GI_number: 17546615 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Ralstonia solanacearum # 3 437 5 394 411 146 28.0 8e-35 MPKRVPELTALQLKNLKNGIHNVGGVKGLYFKKTDTQTRFFLRYSDVSGRHDFSLGSYPQ LSLSQARKLAFETWQQIDSGKDPIREREEERKNKQRATEEKRLAKESYELSFSNVAQQWI EDRESHDYWVNNIREPKCTIQILERNVYPFIGETHIEEISPEMVRAILEPIWQTKPSTAK KVKTYLRQIFQWAIALKKRKDKENPAQMDGTLGVLMEPLQKNKKEKQNYASCPVKDIPQL MSEIHSYNSISARACEFSILTATRSKAVRFAQWNEFDLEKGIWVIPMEHDKIKIPNRDRT IFLSEQALSLLKNLPRFNSTELVFPSNRGSHLSDCGINMFLRGLHEKKFTEDGIGWIDPH KTKKTGKSCIITVHGTARATFRTWAKDDELGNNRKFDQEAVELCLLHSKNDAYNGAYDRA KLEKERRFVMDCWGKYCYSRLDK >gi|301349835|gb|ADCQ01000015.1| GENE 42 44745 - 47678 2864 977 aa, chain - ## HITS:1 COG:no KEGG:mma_3262 NR:ns ## KEGG: mma_3262 # Name: not_defined # Def: hypothetical protein # Organism: M.massiliensis # Pathway: not_defined # 347 964 448 1091 1110 330 33.0 1e-88 MGKKLWITTGIIGALAAAYTAGGFLGVPYGVNWALKKYAEPIVGRTITTQEVKFNPFTLQ FSVKGLNVQKDGEPALLSVGSLQTKVLWDSLFKLSPLVQYITIDGLNSTVIRTGLDTFNF SDIIQRIQEMPTSPEEEKKDDKPLQFSIGNIKLTNSSITLDDKFRHKVDKVTDLNFALPL ISNFQNDVDVPITPDLKFNFNGEPFAINAESVPFTPGKKTGVNFTVTGLNLENAASFNPI PLNVKVTKGTMDCAFNLDFEKKQGEENAYLRLKGTVKMKDVGLEDELGKAYQIIGVKEID ANLKEFAFFRQNLDIGEIQIHNPSVVVIRDKDSLNLVQLLTHIVKEQKAQAKQDAKEAKE KATLPEDEKKTPNDWTWNIDKVSVRNGMINFTDTTNNFKRPVTNVNVSLAPINGKNGTRT SIDASVGAIGGHIQANGGIVITPFSMDLNLQSSGLSIADLTPYISQYSSAHVTQGTFSNK GELKLNLAKDVSFSYSGNADVASLNVTDKQGAAAVSLKNLAVGGISVSGLSPLQISLGTI ALTSPNVNVVMNKNGSINLASLGTPSNAPAPAATTDKPAASKPQSKAQASSGSSSAPAIN VGKITLTDGRVRYTDNSIEPTFKLNASNLAGSLSNYSTTTKGNATVDVKGLLNGTPMNIS GTINPFESKLKLAMKGEVTSLSLPAFSPFSAKFTGHPIEKGLLTYKGAFDINQDKLTSEN ALVINKLEFGSQVPDAKDALPVGLAVSLLQDRQGQIDLNIPVSGSLDDPEFSVGGIIVKV IVNLISKAVTAPFALIGSMFGGEDMDLNNLQFASGSARLDEKTIKALNIVAKAMQDRPGI KIQIIGMASEKEDGEGLKEQLLMRDMRYAIYRDTTSATNAKVLTAAQIDKAIKQLYSEST APNKPKNTDIEQMKAFLMKNQRVATADLKQLADRRAAAVRNYLIQKEKVAADRLFISTSE TQRGDQVVPGVALGLQD >gi|301349835|gb|ADCQ01000015.1| GENE 43 47733 - 48392 570 219 aa, chain - ## HITS:1 COG:RSc0897 KEGG:ns NR:ns ## COG: RSc0897 COG0546 # Protein_GI_number: 17545616 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Ralstonia solanacearum # 9 215 14 222 229 179 45.0 3e-45 MTEHPNVYLFDLDGTLLDSAPDLAAAANHLREVRGLTPLPFETLRKTASSGARGLLGAAF GIHPDDPGYAEMVKEFLDYYEAHMAEHSHLFEGVPKMIDNIKAQGASWGIITNKHARFVH PLIKFHKLEPAVVVCGDTLKVSKPNPEPILFALKSIDAKASEAIYAGDDKRDIDAANEAN VFSVAVKWGYLGSPQPVELWGADLIVHNPSEILEIKLTK >gi|301349835|gb|ADCQ01000015.1| GENE 44 48447 - 49082 826 211 aa, chain - ## HITS:1 COG:RSc0900 KEGG:ns NR:ns ## COG: RSc0900 COG2885 # Protein_GI_number: 17545619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Ralstonia solanacearum # 46 210 52 216 218 129 44.0 5e-30 MNTKTKFGMLIASVALAASGAVCAADAPANPYVQAAGQTLMTNFGLCVRTGYWTPALAEA QGALGQNCQCDTDIIKCEAGAERVTLSADTLFAFNKAVLKPEGIAKLTELTSRMSGLTLD VVMINGYADRIGGAAYNQKLSQRRADAVKTFLAEHGVPAARIHAEGKGQADPVVNCPNPS AKGEIKTFKQLIECLQPNRRAVIEVKGTRNK >gi|301349835|gb|ADCQ01000015.1| GENE 45 49175 - 50515 846 446 aa, chain - ## HITS:1 COG:PA3170 KEGG:ns NR:ns ## COG: PA3170 COG0402 # Protein_GI_number: 15598366 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Pseudomonas aeruginosa # 6 428 11 431 444 310 39.0 5e-84 MQTEKLLLPRWIIPLEGDTEVLENYGLAIENGRIAALIPPADLKNVEAKEVFELPDNVVM PGFVNCHTHASMNLLRCVGPDLTTPNWLTKCIWPIEGQLMSPEFVYDGALLGGAEMLRGG TTTCHDMYFFPDSAAKALREVGLRVVQGAFVIKYPNAEYKGEEDAFGGARALAARHKDDP GLSINIAPHAPYSVTAEALQASMRLAEELDTTWQIHLSETEEERQNAIKEFGCSPVEYLA KLGCLNERTIAVHCVALSDRDIGLLAESGASVVHCPVSNMRLGCGASPVVKLLKAGINVA LGTDGAASACSLSMFEQMRTAGLIAKGFSQDPTELTVNQIIRMATINGANALKLHCDVGS LAVGKLADLAVIDMSQLVTMPVLDVLSNVIYAVEAQCVHQVWVSGSLVANIQQEKLLRPD RGKLLTKSNIMSWQNRVCEILRDDFN >gi|301349835|gb|ADCQ01000015.1| GENE 46 50535 - 50834 292 99 aa, chain - ## HITS:1 COG:Cgl2962 KEGG:ns NR:ns ## COG: Cgl2962 COG3093 # Protein_GI_number: 19554212 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Corynebacterium glutamicum # 3 94 12 103 121 73 43.0 7e-14 MKNLEALHPGMVLKTMFLEPLKLSVYRVAKDIHVPQTRLSQIIAGERAITPDTALRLSKY FDLEEIFWLELQAVYDLAKQKALMKEELDAIQPFQPKNL >gi|301349835|gb|ADCQ01000015.1| GENE 47 50982 - 53849 3778 955 aa, chain + ## HITS:1 COG:RSc0901 KEGG:ns NR:ns ## COG: RSc0901 COG0188 # Protein_GI_number: 17545620 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Ralstonia solanacearum # 72 919 10 868 885 1043 62.0 0 MADNDHNNENEKDKKEQEQDISDETGSETLENQAEESGDAGEGEKKKSRSRSRRENTPDW NLIRQQVNKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNM WNTQHKKSARVVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAA AMRYTEVRLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGM ATNIPPHNLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRG KAIIRAKTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDK NGMRGVIELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFR REVVTRVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAH EAAEMIKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIH AEYKELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIP LREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTN KGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMATADG TVKKTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRA MGRAATGVRGMRLDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTKGI ISIQTTERNGKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGT KLVGLERVTENDDGDNASDNAAVEAEVVSETEAEEAELEAKDEAILKEEENDENL >gi|301349835|gb|ADCQ01000015.1| GENE 48 53833 - 54900 1236 355 aa, chain + ## HITS:1 COG:PA3167 KEGG:ns NR:ns ## COG: PA3167 COG1932 # Protein_GI_number: 15598363 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Pseudomonas aeruginosa # 3 354 4 360 361 353 50.0 3e-97 MTRIFNFAAGPSAMPLPVLEQAASEMTDWHGVGYSILEMSHRSKEFMGIYRETVEMLREL YGIPEEYEVMFVQGGGHLQFAMIPLNFAVGGIGNYAVDGVWSRKAFNEAQKIGEAAEVAC TELRAPRQDELAVTDGAAYLYYCSNETVNGIRYWYRPEVNVPLIADMSSDFLSQPVDISK YGLIFAGAQKNFGPAGLTVVIARKDLLGRAESTTPTMLDYQTYANFESMYNTPPTFAIYI SNLVCKWLLAEGGVKEMERRSILKSQKIYDAIDNSDGFYYNNIEKRSRSRMNVVFNLKNE ELNQLFIEEALQKGLANIKGHRIVGGMRASLYNAVSVEAAEALADYMKAFAERHS >gi|301349835|gb|ADCQ01000015.1| GENE 49 54911 - 56032 944 373 aa, chain + ## HITS:1 COG:RSc0904_2 KEGG:ns NR:ns ## COG: RSc0904_2 COG0077 # Protein_GI_number: 17545623 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Ralstonia solanacearum # 90 359 3 269 271 273 48.0 3e-73 MPVNEELLPLRNKIDGLDSELVRLLNERAEVAKEIGEIKARAGLPVYRPEREAEVLRKIC GKNEGPLPNESLVAIWREVMCACRGLESELKVAYLGPRGTFSEQAMIRQFGSGVVGMPSG SIEEVFRKVESGDAAYGIVPIENSTEGAVNRTMDYLLKTSLFIVGECSIPIQHNLMTRSG TMEGITRVYSHPQSLGQCVQWLNRNVPSLERLTAESNGEAARLASENPAYAAIAGEVAAK IFGLQIVAANIQDSNTNRTRFLILGREPAEPSANPQEDKTSLIFSVPHRAGSLYQALKPF DDFGVSMMRLDSRPAKRGTWEYFFYTDIEGNMSEPKIREALEIFREGCASLKCLGSYPTE KNFRRADTKGSNL >gi|301349835|gb|ADCQ01000015.1| GENE 50 56029 - 57156 1360 375 aa, chain + ## HITS:1 COG:RSc0905 KEGG:ns NR:ns ## COG: RSc0905 COG0079 # Protein_GI_number: 17545624 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Ralstonia solanacearum # 9 364 7 364 374 328 47.0 1e-89 MTETTITTPSWVQALDKYVASKPIEDVAADLGLKPEEIIMLVANENPNGMSSKVKEAVAT AALNLNRYPDADAYHLQKAIAERYGVSQDWVVIGSGSSELLGLAAETVLSEGTTAIYPQY SFSLYPMVARLCGAETIEIPSTGDFNADLDAMADAVDERTRLIFLTNPNNPTGTYLAEKD ILDFLDKIPPTVMVLFDEAYVEFLEPALRCDSMEIVRLHPNVMVARTFSKAYGLAGARVG YGIAQPGLLSMLNRVRHPFNVNDLSQIAALAALQDQEFVEKTLEVNRKGIKFLSEAFDAL GLPYMGLHANFITVKVGPHADDIVQYLLKKGIIVRRMKSYDLPEWIRVSVGTPEQNERFL EVLKEALAKFEETSA >gi|301349835|gb|ADCQ01000015.1| GENE 51 57153 - 58013 867 286 aa, chain + ## HITS:1 COG:RSc0906 KEGG:ns NR:ns ## COG: RSc0906 COG0287 # Protein_GI_number: 17545625 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Ralstonia solanacearum # 2 278 9 284 298 223 49.0 2e-58 MKMAVIGCGLIGGSMALSWKRAGIVDEVIAFGHNPATLQKALDKGAADTVTTSMEEAVKD ADIVVSAVPVEAMESVFTEMAPFLKSDAVVTDVGSTRQTVIAAARKGLGDKFHQYAPAHP IAGGEMPGVDYASADLFDEKVVISTPDEGMDPKVVTFIEEAWRKAGARVQAMSPLQHDLT FASVSHLPHVLAYALVDMIAREENAQEKLKMAGAGFRDFTRIASSSPVMWRDICLSNREA LSHELKRYRASLDTLQKYIDESDGKALESVFENAVRNRRGLVFPGK >gi|301349835|gb|ADCQ01000015.1| GENE 52 58025 - 59320 1120 431 aa, chain + ## HITS:1 COG:RSc0907 KEGG:ns NR:ns ## COG: RSc0907 COG0128 # Protein_GI_number: 17545626 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Ralstonia solanacearum # 3 428 2 434 436 400 52.0 1e-111 MEEILKLDPIMKVGGSVDLPGSKSISNRALLLAALSEGTTELNNLLVAEDTEMMIGALET LGVKLEVSNDGTEVKVEGCGGNFPVKKADLFLGNAGTAMRPLSSSLAFSGGEYVLDGVAR MRQRPIAHLVEALNSVGGRLSYLGEPGFPPIKIEPATRINSDIVHVRGDVSSQFVSGLLM AAPLIAPEQGLRIRIDGELISSPYVSLTCRLMERFGVEVKTSEKDFLVPRTLYKAPSVFE VEADASSASYFLALGALVGPLKINGIGADSVQGDAAFVEYLVKMGAAVTRGENWIKTGPS RYGHKLHGLQADVRPIPDAAMTFAAMAPMCEGPTILRGISSWRVKETDRIAAMHNELTKV GCRVESTDDMIKITPPVKLRSAVFDTYKDHRMAMCMSLIAAGGVPVEIRDPNCVRKTFPD YFERLAGVVEK >gi|301349835|gb|ADCQ01000015.1| GENE 53 59320 - 59982 478 220 aa, chain + ## HITS:1 COG:RSc0908 KEGG:ns NR:ns ## COG: RSc0908 COG0283 # Protein_GI_number: 17545627 # Func_class: F Nucleotide transport and metabolism # Function: Cytidylate kinase # Organism: Ralstonia solanacearum # 6 217 12 223 230 203 53.0 2e-52 MSQVDVIAIDGPVASGKGSVSSGVAKALDFHVLDSGALYRLTALACMNQCVDLSDAAAAE KVAQSLNPLFKDGKIYLEGKEVTDAIRTEEVGLNASKIAAYPGVRKALFELQRRSAVAPG LVADGRDMGSVVFPEARLKIFLTASAESRAKRRYNQLKEKGISSNIDDLVSDLKDRDRRD MERSVAPLKPAEGARILDSSGLTLQETIDLVLAWYRESKA >gi|301349835|gb|ADCQ01000015.1| GENE 54 60076 - 61770 2313 564 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163856200|ref|YP_001630498.1| 30S ribosomal protein S1 [Bordetella petrii DSM 12804] # 1 564 6 572 575 895 78 0.0 MTNTTTKPTESFADLFAESLAKQEMKQGEVIPAEVVRVDYNYVVVNAGLKSESFIPIEEF KNDRGEVDVKVGDFVSVAIESLENGYGDTVLSRDKAKRLAAWMNLEKALETGELVTGTVT GKVKGGLTVMTNGIRAFLPGSLVDTRPVKDTTPYEGKTMEFKVIKLDRKRNNVVLSRRAV VEASMGEERAKLLETLKEGAIVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSE VLEQGQEITAKVLKFDQEKNRVSLGIKQLGEDPWIGIARRYPQGTRLFGKVTNITDYGAF VEIEAGIEGLVHVSEMDWTNKNVDPKKVVQLGEEVEVMVLEIDEERRRISLGMKQCKPNP WEEFAATHQKGDTVKGQIKSITDFGVFIGLEGGIDGLVHLSDLSWTEPGEEAVRKYKKGE ELEAVVLSIDVERERISLGVKQMSGDPFNNFCSTHEKGSVVTGKVKSVEAKGAVIDLGND TEGYLRASEIGPDRVEDARNVLKEGDEVTAAITNIDRKARSIQLSIRAKDQAETREAMAK MEEDAQAGTTNLGALLRAKLEQNK >gi|301349835|gb|ADCQ01000015.1| GENE 55 61788 - 62090 340 100 aa, chain + ## HITS:1 COG:XF2437 KEGG:ns NR:ns ## COG: XF2437 COG0776 # Protein_GI_number: 15839028 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Xylella fastidiosa 9a5c # 1 94 23 112 126 122 63.0 2e-28 MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERVDKLADD >gi|301349835|gb|ADCQ01000015.1| GENE 56 62239 - 63408 1184 389 aa, chain + ## HITS:1 COG:RSc0912 KEGG:ns NR:ns ## COG: RSc0912 COG2956 # Protein_GI_number: 17545631 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosaminyl transferase # Organism: Ralstonia solanacearum # 1 388 1 419 425 290 38.0 3e-78 MDFELWYLILVPLLFAAGWFARSFDIKEKQTIANEKDTLYKGVDLLLSNKQDQAIDAFIN LVKLDPDTVEMHFSLAGLFRRRGEFDRAIKIHNVLVNREDLPKKIRSRALYELGEDYLKA GLWDRAEECFLKLSDTSESYKTIARKELLHIYETEKEWQKAIDEANIIQRQSGEDQSTRI AQLYCELTQQNLYFKNFKGAAEALEKALKVDPNNKRALIIKGKMLKAKGDIDGALATWKQ VGQISPVYGTLVVEQIASLLLEAGRKEEAVKYLEDLFKDGSTTDEVDTAGILLGKAGNSK EAITLIQEHLKTQPTLVAFYRLIDLRLANEPENESLKQLHGLLKNMLSKAVRYKCTKCGF ATRKFLWRCPGCHQWETFPPVRQENLSGK >gi|301349835|gb|ADCQ01000015.1| GENE 57 63533 - 64429 973 298 aa, chain + ## HITS:1 COG:NMB0822 KEGG:ns NR:ns ## COG: NMB0822 COG0501 # Protein_GI_number: 15676720 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Neisseria meningitidis MC58 # 3 294 70 346 347 276 55.0 3e-74 MFKRIGLFLLTNVAVLVVLGVVLNIVSAVFGINFSNVAGKGQSYGTLLIFAGIVGFSGSI ISLLMSKTIAKSTMGVQMIDVNHPSTKLEAWLVDTVHHHSQKAGIPMPEVGIYEGEANAF ATGATKNSSMVAVSTGLLSSMNKEEVEAVLAHEIAHVANGDMVTMTLIQGVTNTFVVFLS RIIGNFVDRGILRNEDDAPGVGYYVTSFILDLVLGFLASMVVAAFSRHREFRADAGAAKI MGSSTPMINALARLGGVPTEELPGAVKGFGIAGSIGQLLATHPSIEDRIAALRTQNAH >gi|301349835|gb|ADCQ01000015.1| GENE 58 64585 - 64746 78 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQRELSAKNVHVSHEIGQFDVQGVSFNFAHGRLRELKLPCDFLLSQVLLVSKS >gi|301349835|gb|ADCQ01000015.1| GENE 59 64948 - 66339 1585 463 aa, chain - ## HITS:1 COG:RSc1180 KEGG:ns NR:ns ## COG: RSc1180 COG0534 # Protein_GI_number: 17545899 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Ralstonia solanacearum # 18 443 8 436 448 242 37.0 9e-64 MSTRILSRLQPPDTSYWAIIKLSLPVWISNVAIVGGATLDTLMTGHLGSTDLAAVAIGLA VSVSVFVALVGVMQGLSPIAGHHYGAGHHERIGFELHQTIWLAILLAIIGMGLMCYTPMW MTLTNSTGRVAEIATNFLLINAIGLPAAMAGRAYMAMNAAVSRPKVAMWIALSMLAVKAV TNYIFIFGSAFIPSFGGAGCAISSTINAFLSLFLYWVIWHYDSFYAKMRQKRISMPNRKA LTNLLKLGIPIGLSAFFEVTSFTFMTIFISRLGADVVSAHQIVANLTSLFYMAPLAIGVT SSVLVSQSLGANSPETARMATYKCLKFCICLAVFVSALLYFCKYFFVGLYTSDLDVIKVS TYLIGFASIYHVFDAVNCVGSFSMRGYRITFLPMIIYGVFLWGLGLGLGSILTFTDYLSP APMGAAGYWTAITIGLTLSGIIVGLCAVYVARAFAHGHKVWLR >gi|301349835|gb|ADCQ01000015.1| GENE 60 66356 - 68080 1549 574 aa, chain - ## HITS:1 COG:RSc1181 KEGG:ns NR:ns ## COG: RSc1181 COG1807 # Protein_GI_number: 17545900 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Ralstonia solanacearum # 11 561 11 559 598 238 30.0 3e-62 MLSNHSSPAVVSASAAGKLPRAALIALLVAFVLPLFFSTDVWSGKSLISFGVAWNMANGS FADWLLPNVNGFPASDVGPLSFWFAALSIKVFGPLFGNVEAFHITAGLWFSVTTAAIWYS TYLLSRRDEAQPVSFAFGGEAARKDYGRLVADIAVLLTVGTYGIISAFHELTPVTCLLAF SALAFYGIVLSLQYLWRGSIIAGLSIGAIALASSPGAGLWCFFGAWVAIFLTPDYTSRSK RAVLTLSIAFATAMLWPILVFACFPAEAAEWFKSWISTSLAVLSPLPADEYLWLLKNISW LTFPLWPLALWGIYAWRDQIRQAPLIIPLSFSVVALCSVIFTGTELYSTLLFLVPSLSVL AALGVVSLKRSRENFLDLYSGIIYTLAVIAVWIYFFAWTEGVPAKMAFSLTRLAPEVEPH GTSVFLFFLAVTATVLWIAIVFWRLFKHPVFSWRGAWMAGTGLTAVWIIVMSLFVNLIDG ARSMKPIVDNFKAVVVENKIPLDKIGASHLTLSNIAAFNYWGGVNFDKQADAPWILRAVD RDYDENTLDLRYEVVDVFQGRPRSSEKFLLIRRK >gi|301349835|gb|ADCQ01000015.1| GENE 61 68176 - 68472 282 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|33592360|ref|NP_880004.1| 50S ribosomal protein L31 type B [Bordetella pertussis Tohama I] # 1 88 1 88 88 113 59 3e-24 MKPNIHPQYREVAFTDMSIGKTFIIRSTADARDTIEIDGVTYPQVKLDTSSESHPFYTGA QTRIVEAGRVEKFRQKFAAKSAALNASAEAAKAAKAKK >gi|301349835|gb|ADCQ01000015.1| GENE 62 68623 - 69879 1759 418 aa, chain - ## HITS:1 COG:RSc1187 KEGG:ns NR:ns ## COG: RSc1187 COG1158 # Protein_GI_number: 17545906 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Ralstonia solanacearum # 1 418 1 418 420 679 81.0 0 MHLSDLKSKHVSELLDIALELDVDNASRLRKQELMFAILKKRAKAGEQIFGDGTLEILPD GFGFLRSPVSSYLASTEDIYISPSQIRRFNLHTGDTVEGEVRIPKDGERYFALVKVDKVN GLPPEALKHRILFENLTPLFPNQPLKLERNISGDENLTGRLIDILAPIGKGQRALLVASP KSGKTVLMQHIAHAITANYPDVILMVLLIDERPEEVTEMERSVKGEVIASTFDEPATRHV QVAEMVIEKAKRLAESKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDSNALQRPKRI LGAARNLEEGGSLTIIGTALVETGSRMDDVIYEEFKGTGNMEIHLDRRLAEKRVYPAINV AKSGTRKEELLLAPQELQNIWILRKFLYDMDEIQAMEFLLDKMRPTKNNAEFFAMMRR >gi|301349835|gb|ADCQ01000015.1| GENE 63 70017 - 70337 620 106 aa, chain - ## HITS:1 COG:RSc1188 KEGG:ns NR:ns ## COG: RSc1188 COG0526 # Protein_GI_number: 17545907 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Ralstonia solanacearum # 3 106 5 108 108 108 47.0 2e-24 MALKQVTDASFVDDVLNQKGVVVVDFWAPWCGPCRMLGPVLEKAAETLPDGVQIVKYNVD ECQDVASQLGVRGIPTLAVYKDGQLQAQQAGAMNSAQFSEFLKNFI >gi|301349835|gb|ADCQ01000015.1| GENE 64 70684 - 70929 272 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860338|gb|EFL83415.1| ## NR: gi|302860338|gb|EFL83415.1| hypothetical protein HMPREF0189_00493 [Burkholderiales bacterium 1_1_47] # 1 81 1 81 81 146 100.0 4e-34 MIRFSVPFIALMLAFSGTANAKFIGRWDPAAYAQGKFEIQKTAFVQKEPVVEKIQIESKH ILVKVDYTGKIFRKGYAFAKN >gi|301349835|gb|ADCQ01000015.1| GENE 65 71167 - 71676 635 169 aa, chain + ## HITS:1 COG:RSc2565 KEGG:ns NR:ns ## COG: RSc2565 COG0454 # Protein_GI_number: 17547284 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Ralstonia solanacearum # 4 163 11 165 177 168 51.0 5e-42 MDNFNIRNARPQDCPVIAELIRGLAHYEKLDDQCQVTPELLEKCLFGDKPECYAVVGWLT GKNGTEKPVSFALYFYNFSTFLARKGLYLEDIFVLPEYRHRGIGKKMMNYLAAKAVADGC GRFEWSVLDWNQPAIDFYESIGATVMQEWRICRLTGEKLEQFAQKALAK >gi|301349835|gb|ADCQ01000015.1| GENE 66 71912 - 72092 196 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 60 1 60 595 124 100.0 2e-27 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKIGTILGGQKDGKIRFDEAF Prediction of potential genes in microbial genomes Time: Fri May 13 05:46:23 2011 Seq name: gi|301349834|gb|ADCQ01000016.1| Burkholderiales bacterium 1_1_47 cont1.16, whole genome shotgun sequence Length of sequence - 108956 bp Number of predicted genes - 109, with homology - 107 Number of transcription units - 44, operones - 24 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 251 303 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein + Prom 339 - 398 1.9 2 2 Op 1 30/0.000 + CDS 454 - 2535 1424 ## COG2812 DNA polymerase III, gamma/tau subunits 3 2 Op 2 23/0.000 + CDS 2553 - 2879 197 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 4 2 Op 3 . + CDS 2884 - 3495 668 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Term 3652 - 3680 -0.3 + Prom 3534 - 3593 3.7 5 3 Op 1 17/0.000 + CDS 3842 - 4885 1405 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 6 3 Op 2 24/0.000 + CDS 4958 - 5767 809 ## COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 7 3 Op 3 . + CDS 5769 - 6605 1059 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component + Term 6625 - 6654 1.2 + Prom 6822 - 6881 3.8 8 4 Tu 1 . + CDS 7029 - 8072 1403 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 8117 - 8147 2.1 9 5 Op 1 . + CDS 8420 - 8647 145 ## 10 5 Op 2 . + CDS 8650 - 9540 468 ## COG3344 Retron-type reverse transcriptase - Term 9926 - 9967 -0.7 11 6 Tu 1 18/0.000 - CDS 10023 - 12323 1913 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 12343 - 12402 2.0 - Term 12376 - 12414 11.6 12 7 Op 1 25/0.000 - CDS 12434 - 12634 295 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 13 7 Op 2 . - CDS 12653 - 13297 388 ## COG0194 Guanylate kinase 14 7 Op 3 . - CDS 13329 - 14297 928 ## COG0176 Transaldolase - Prom 14317 - 14376 5.5 + Prom 14280 - 14339 4.2 15 8 Tu 1 . + CDS 14465 - 14956 628 ## COG3468 Type V secretory pathway, adhesin AidA + Term 15125 - 15159 4.4 + Prom 15241 - 15300 6.8 16 9 Op 1 . + CDS 15388 - 16578 1146 ## COG0505 Carbamoylphosphate synthase small subunit 17 9 Op 2 . + CDS 16575 - 17177 605 ## COG0279 Phosphoheptose isomerase 18 9 Op 3 1/0.250 + CDS 17184 - 20408 3844 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 19 9 Op 4 . + CDS 20463 - 21467 814 ## COG0078 Ornithine carbamoyltransferase + Term 21547 - 21576 1.4 + Prom 21505 - 21564 2.1 20 10 Tu 1 . + CDS 21612 - 22085 570 ## COG0782 Transcription elongation factor + Term 22098 - 22140 -0.7 21 11 Tu 1 . - CDS 22107 - 22646 222 ## PROTEIN SUPPORTED gi|56478165|ref|YP_159754.1| RNA-binding protein - Prom 22667 - 22726 4.5 + Prom 22597 - 22656 3.6 22 12 Tu 1 . + CDS 22685 - 23329 607 ## COG0293 23S rRNA methylase + Term 23346 - 23392 4.0 - Term 23334 - 23378 4.4 23 13 Op 1 . - CDS 23427 - 23990 480 ## Mevan_0161 hypothetical protein 24 13 Op 2 . - CDS 24032 - 24439 252 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 24493 - 24552 4.1 - Term 24518 - 24553 7.2 25 14 Tu 1 . - CDS 24580 - 25539 1156 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 25656 - 25715 6.3 26 15 Tu 1 . + CDS 25729 - 26634 606 ## COG0583 Transcriptional regulator + Term 26656 - 26687 -0.6 + Prom 26652 - 26711 2.9 27 16 Op 1 . + CDS 26731 - 30177 3545 ## COG0587 DNA polymerase III, alpha subunit + Term 30246 - 30285 -0.6 + Prom 30248 - 30307 3.0 28 16 Op 2 . + CDS 30371 - 32407 1641 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 32422 - 32462 6.3 29 17 Op 1 . + CDS 32568 - 33143 692 ## COG0782 Transcription elongation factor 30 17 Op 2 17/0.000 + CDS 33161 - 34240 947 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 31 17 Op 3 15/0.000 + CDS 34237 - 35370 1339 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase + Term 35477 - 35524 -0.7 + Prom 35391 - 35450 3.9 32 17 Op 4 25/0.000 + CDS 35646 - 35996 478 ## COG1862 Preprotein translocase subunit YajC + Term 36016 - 36066 6.0 33 17 Op 5 31/0.000 + CDS 36131 - 37999 2255 ## COG0342 Preprotein translocase subunit SecD 34 17 Op 6 . + CDS 38002 - 38937 1012 ## COG0341 Preprotein translocase subunit SecF + Term 38963 - 38994 3.2 35 18 Op 1 . + CDS 39069 - 39626 369 ## COG3152 Predicted membrane protein 36 18 Op 2 . + CDS 39589 - 39921 637 ## gi|302860375|gb|EFL83452.1| conserved hypothetical protein + Term 39947 - 39985 7.4 - Term 39930 - 39979 12.2 37 19 Op 1 . - CDS 40000 - 40662 718 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 38 19 Op 2 4/0.188 - CDS 40745 - 41794 1266 ## COG0309 Hydrogenase maturation factor 39 19 Op 3 13/0.000 - CDS 41814 - 42920 1079 ## COG0409 Hydrogenase maturation factor 40 19 Op 4 1/0.250 - CDS 42917 - 43150 359 ## COG0298 Hydrogenase maturation factor 41 19 Op 5 2/0.250 - CDS 43156 - 45462 1424 ## COG0068 Hydrogenase maturation factor 42 19 Op 6 . - CDS 45466 - 46140 743 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase - Term 46153 - 46197 5.2 43 20 Op 1 . - CDS 46211 - 46393 186 ## 44 20 Op 2 . - CDS 46415 - 46762 390 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) 45 20 Op 3 . - CDS 46755 - 47849 1132 ## Slit_2426 putative hydrogenase expression/formation protein HupK 46 20 Op 4 . - CDS 47846 - 48445 523 ## Rfer_4094 hypothetical protein 47 20 Op 5 . - CDS 48402 - 48662 276 ## COG1773 Rubredoxin 48 20 Op 6 . - CDS 48662 - 49567 1171 ## Pnap_1968 HupH hydrogenase expression protein 49 20 Op 7 . - CDS 49591 - 50037 506 ## Mlg_2024 hydrogenase-1 expression HyaE 50 20 Op 8 . - CDS 50037 - 50345 390 ## Mpe_A2821 hypothetical protein 51 20 Op 9 . - CDS 50363 - 51019 697 ## COG0680 Ni,Fe-hydrogenase maturation factor - Prom 51043 - 51102 4.8 52 21 Op 1 . - CDS 51152 - 51499 213 ## COG3093 Plasmid maintenance system antidote protein 53 21 Op 2 8/0.062 - CDS 51508 - 52278 948 ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit 54 21 Op 3 11/0.062 - CDS 52291 - 54060 2324 ## COG0374 Ni,Fe-hydrogenase I large subunit 55 21 Op 4 . - CDS 54060 - 55136 1145 ## COG1740 Ni,Fe-hydrogenase I small subunit - Prom 55322 - 55381 8.3 + Prom 55298 - 55357 6.0 56 22 Op 1 14/0.000 + CDS 55556 - 56251 618 ## COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component 57 22 Op 2 14/0.000 + CDS 56254 - 56922 678 ## COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component 58 22 Op 3 . + CDS 56943 - 57680 761 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 59 22 Op 4 . + CDS 57680 - 57868 217 ## gi|302860397|gb|EFL83474.1| heme exporter protein CcmD 60 22 Op 5 16/0.000 + CDS 57865 - 58311 492 ## COG2332 Cytochrome c-type biogenesis protein CcmE 61 22 Op 6 11/0.062 + CDS 58320 - 60275 2638 ## COG1138 Cytochrome c biogenesis factor 62 22 Op 7 10/0.062 + CDS 60288 - 60824 801 ## COG0526 Thiol-disulfide isomerase and thioredoxins 63 22 Op 8 9/0.062 + CDS 60824 - 61333 606 ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes 64 22 Op 9 . + CDS 61330 - 62706 1595 ## COG4235 Cytochrome c biogenesis factor + Term 62752 - 62778 -0.7 - Term 62740 - 62766 -0.7 65 23 Tu 1 . - CDS 62790 - 63575 1022 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 63607 - 63666 2.4 + Prom 63545 - 63604 5.8 66 24 Op 1 . + CDS 63845 - 65494 2208 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit 67 24 Op 2 . + CDS 65565 - 66422 612 ## COG4235 Cytochrome c biogenesis factor 68 25 Tu 1 . - CDS 66419 - 68287 1676 ## COG0826 Collagenase and related proteases - Term 68289 - 68326 6.1 69 26 Op 1 1/0.250 - CDS 68351 - 68998 797 ## COG0666 FOG: Ankyrin repeat 70 26 Op 2 . - CDS 68995 - 69771 826 ## COG0084 Mg-dependent DNase 71 26 Op 3 8/0.062 - CDS 69773 - 70561 674 ## COG2908 Uncharacterized protein conserved in bacteria 72 26 Op 4 7/0.125 - CDS 70562 - 71053 811 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 73 26 Op 5 1/0.250 - CDS 71071 - 71628 897 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Term 71638 - 71671 2.1 74 26 Op 6 . - CDS 71683 - 72243 711 ## COG0457 FOG: TPR repeat - Prom 72264 - 72323 2.4 75 27 Tu 1 . + CDS 72440 - 73183 283 ## Dacet_2090 putative transcriptional regulator, Crp/Fnr family + Prom 73210 - 73269 4.1 76 28 Op 1 . + CDS 73290 - 73637 301 ## gi|302860414|gb|EFL83491.1| fumarate reductase flavoprotein subunit 77 28 Op 2 . + CDS 73668 - 75362 2277 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 75415 - 75452 7.1 - Term 75394 - 75449 4.7 78 29 Tu 1 . - CDS 75506 - 75712 187 ## gi|302860416|gb|EFL83493.1| conserved hypothetical protein - Prom 75948 - 76007 4.2 + Prom 75812 - 75871 3.6 79 30 Op 1 1/0.250 + CDS 75944 - 77338 1478 ## COG0215 Cysteinyl-tRNA synthetase 80 30 Op 2 1/0.250 + CDS 77344 - 77997 385 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 81 30 Op 3 3/0.250 + CDS 78007 - 78978 1054 ## COG0825 Acetyl-CoA carboxylase alpha subunit 82 30 Op 4 . + CDS 78959 - 80395 830 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Term 80364 - 80406 6.1 83 31 Op 1 13/0.000 - CDS 80430 - 81230 274 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 84 31 Op 2 9/0.062 - CDS 81223 - 82119 1366 ## COG4120 ABC-type uncharacterized transport system, permease component 85 31 Op 3 . - CDS 82135 - 83133 1265 ## COG2984 ABC-type uncharacterized transport system, periplasmic component - Prom 83173 - 83232 7.8 - Term 83215 - 83244 1.4 86 32 Op 1 34/0.000 - CDS 83274 - 84017 588 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 87 32 Op 2 31/0.000 - CDS 84020 - 84691 802 ## COG0765 ABC-type amino acid transport system, permease component - Term 84715 - 84751 4.0 88 32 Op 3 . - CDS 84776 - 85546 1126 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 85569 - 85628 4.2 + Prom 85526 - 85585 3.0 89 33 Tu 1 . + CDS 85648 - 86601 573 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 86750 - 86786 1.5 - Term 86476 - 86515 9.1 90 34 Tu 1 . - CDS 86598 - 87137 797 ## COG1592 Rubrerythrin - Prom 87173 - 87232 6.8 + Prom 87204 - 87263 4.2 91 35 Tu 1 . + CDS 87286 - 87585 161 ## gi|302860429|gb|EFL83506.1| conserved hypothetical protein + Term 87745 - 87812 30.2 + TRNA 87707 - 87800 77.9 # Ser GCT 0 0 + Prom 87726 - 87785 80.4 92 36 Tu 1 . + CDS 87866 - 88402 294 ## COG2184 Protein involved in cell division + Term 88629 - 88679 -0.7 - Term 88459 - 88500 4.2 93 37 Op 1 . - CDS 88528 - 89364 475 ## COG0157 Nicotinate-nucleotide pyrophosphorylase 94 37 Op 2 23/0.000 - CDS 89368 - 90036 446 ## COG4149 ABC-type molybdate transport system, permease component 95 37 Op 3 . - CDS 90040 - 90765 838 ## COG0725 ABC-type molybdate transport system, periplasmic component 96 37 Op 4 . - CDS 90765 - 91451 217 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 91472 - 91531 4.4 97 38 Tu 1 . - CDS 91591 - 92382 244 ## COG0789 Predicted transcriptional regulators - Prom 92405 - 92464 9.9 + Prom 92315 - 92374 5.2 98 39 Tu 1 . + CDS 92397 - 93599 948 ## COG0477 Permeases of the major facilitator superfamily + Term 93600 - 93643 5.2 - Term 93587 - 93628 10.0 99 40 Op 1 . - CDS 93680 - 95437 2206 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 95466 - 95525 5.3 - Term 95567 - 95594 -0.9 100 40 Op 2 . - CDS 95718 - 98330 1178 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 98479 - 98538 8.9 - Term 98858 - 98889 -0.9 101 41 Op 1 . - CDS 98995 - 100407 1574 ## COG0471 Di- and tricarboxylate transporters 102 41 Op 2 . - CDS 100482 - 101831 1557 ## COG0015 Adenylosuccinate lyase - Prom 101938 - 101997 5.9 + Prom 102014 - 102073 3.2 103 42 Tu 1 . + CDS 102105 - 102836 518 ## COG2188 Transcriptional regulators + Prom 102868 - 102927 2.5 104 43 Op 1 . + CDS 102955 - 103917 358 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 105 43 Op 2 . + CDS 103966 - 104559 359 ## HH1479 hypothetical protein 106 43 Op 3 8/0.062 + CDS 104624 - 106399 581 ## COG0642 Signal transduction histidine kinase 107 43 Op 4 . + CDS 106396 - 107019 236 ## COG4566 Response regulator 108 44 Op 1 . + CDS 107147 - 108736 1988 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 109 44 Op 2 . + CDS 108798 - 108954 82 ## gi|302858708|gb|EFL81818.1| fumarate reductase flavoprotein subunit Predicted protein(s) >gi|301349834|gb|ADCQ01000016.1| GENE 1 3 - 251 303 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 82 514 595 595 166 100.0 5e-40 KENKKAGKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGP ETPEDVQEEPEAETLLGTDIEI >gi|301349834|gb|ADCQ01000016.1| GENE 2 454 - 2535 1424 693 aa, chain + ## HITS:1 COG:RSc1191 KEGG:ns NR:ns ## COG: RSc1191 COG2812 # Protein_GI_number: 17545910 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Ralstonia solanacearum # 1 365 1 365 728 478 68.0 1e-134 MSYQVLARKWRPHDFSSLLGQDHVVRALTHALTENRLHHAYLFTGTRGVGKTTISRILAK CLNCVGPDGKGGITAEPCGVCEACRAIDEDRFVDYIEMDAASTRGIDDMVSLLERAKYVP TNARFKVYMIDEVHQLTSAAFNAMLKTLEEPPEYVKFILATTDPQKVPVTVLSRCLQFNL KSLSPQLISSHMAELLEKEQISFEKPALRMLASGARGSMRDGLSLLDQAIAYSAGNVTLE SVREMLGTIDSTTLIRLLGALANHEPKEIMKVADEIGARSLSYTQAMKDLAVLLHRIAMA QQLPEILTDEEPDAPELRQLASVFSPDEVQLFYQIAIHGRNDMALAPDEYAGFTMALLRM LAFAPLEGKMPKSLPAAVTHKEEAPALPKTEPAKTELPAQQKAQSVDTQPKAPEAPAASA KPVLSTQELEGIPWDHSIATGKPVFVPQGSESAVPNLKKKAAEKSKPAAAAPVAKEVNPQ PKAPEAEPFPPEIVAAPAIPSIDMPDDDAPWVPETDSVPPDDLDWMAPPAWPEEYSEEAG VSVLPPAPQEKQKEYIPAEPVQMNAWLEAAEKIHLDPASQPLVTSAELESFDGQNMKLTV DLEKLTAHDMVAKLAAELKKVLGSDVLVTVTTAPSKYQNLRTLYAQRFLAEKQKKLSELK KDKRILSFMKVFNVEPKAEDLDLLDKEGKVRTI >gi|301349834|gb|ADCQ01000016.1| GENE 3 2553 - 2879 197 108 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 2 107 3 107 114 80 39 3e-14 MKGFGGMGQMGQMMKQAQMMQMNIQKAQKELETIEVTGEAGNGMVKVTMTCKNVCRRVMI DDSLVGADADREMLEDLLLTAINDASKKVEAETNAKISKATGGMKLPF >gi|301349834|gb|ADCQ01000016.1| GENE 4 2884 - 3495 668 203 aa, chain + ## HITS:1 COG:RSc1194 KEGG:ns NR:ns ## COG: RSc1194 COG0353 # Protein_GI_number: 17545913 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Ralstonia solanacearum # 6 198 11 205 207 200 52.0 2e-51 MEQIGAIAELIDALKKLPGVGPRAAQRIAYQLLNGDRSDANRLGEALLKATKTVHRCARC NNLTDGELCSYCSSHNRDDSLLCIVESVADLMVIEQSLSYHGRYFILMGRLSPLNGVGPH EIGLDKLLERAGEPEVKEVIIATSFTAEGEATAFAVSELLSKHYPQLKLTRIARGVPAGA EIEYTDVNTVAQAMLNRRVRESD >gi|301349834|gb|ADCQ01000016.1| GENE 5 3842 - 4885 1405 347 aa, chain + ## HITS:1 COG:RSc1198 KEGG:ns NR:ns ## COG: RSc1198 COG0715 # Protein_GI_number: 17545917 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Ralstonia solanacearum # 28 344 32 348 349 367 57.0 1e-101 MNKFTRRTVIAAACAAAAMTFGPMSFAQQAPEKKDVTIAVGGKSLYYYLPLSIAEQLGYF KDEGLNVKIVDFQGGSRSLQAVVGGSADVVSGAFEHTISMQAKKQPMTAFVLQGRAPQLA LVVSNKTMKDYKQLSDLKGKKVGVTAPGSSSQMVANFILKKGGLGPKDVAFIGVGSSSGA VSAIRSGQIDALINLDPVITILLKNGDAKLVADTRKVKESESFFGGTMPAGCLYAPVSFI EKNPQTVQALTNAIVRADEWLSKATPEEVAKVVPASYLMGNRDIYLAGFEGNRDALSPDG RFPDGCAKISLGALQTVNDKIDPAKIDLTKVYTNKFVDEALKKYPAK >gi|301349834|gb|ADCQ01000016.1| GENE 6 4958 - 5767 809 269 aa, chain + ## HITS:1 COG:RSc1199 KEGG:ns NR:ns ## COG: RSc1199 COG1116 # Protein_GI_number: 17545918 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component # Organism: Ralstonia solanacearum # 1 265 1 267 270 400 70.0 1e-111 MNQPAVEFDDVTCSFVSDDNKHYTAVRDVNLTIGDGEFVSVVGPTGCGKSTVLNMAAGLL TPSKGTVKVFGEELVGLNKRAGYMFQAEALMPWRTAIDNVSAGLQFKGVPEKERHEQARH WLSRVGLSGFEDRYPHELSGGMRKRVALAQTLIMDPDIILMDEPFSALDIQTRQLMENEV LALWSQKKKAVLFITHDLDEAISISDRVVVFSAGPGSHPIGEFYIDIARPRDVAEVRVTP RFIELHNAIWADLREEVLKGYENQRNRVK >gi|301349834|gb|ADCQ01000016.1| GENE 7 5769 - 6605 1059 278 aa, chain + ## HITS:1 COG:RSc1200 KEGG:ns NR:ns ## COG: RSc1200 COG0600 # Protein_GI_number: 17545919 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Ralstonia solanacearum # 11 278 7 263 263 321 68.0 8e-88 MKKGSTPILQSKTKLVTCQLLLLVAIFLFWWLMTKPGLIPPFMFQDENQAAFFFGEPVQI GKVIWDWFAVNLEIYPNLAVTLTETVLAFIFGTAAGLLVGLWLALAPTAAAIADPYIKGL NSMPRVILAPIFGVWFGLGIGSKVALGITLVFFIVFFNVYQGVREVSPNVLASARMLGAN KTQLLRFVYLPSAMSWVFSSLHSSVGMAFVGAVVGEYLGSASGVGYLILQAESTFDINTV MAGILVLTAFALVLDWMVSLAEHHFMKWQPKGGRSEKL >gi|301349834|gb|ADCQ01000016.1| GENE 8 7029 - 8072 1403 347 aa, chain + ## HITS:1 COG:ECs3833 KEGG:ns NR:ns ## COG: ECs3833 COG0252 # Protein_GI_number: 15833087 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 3 347 5 348 348 409 65.0 1e-114 MIRKAVLGTVLAAVCGAAFAALPNVAVYATGGTIAGQSAASDKTNYSAAKVGVDKLVQAV PELANIANVTSDQVAQIGSQDMSDAVWLTLAKKINAECGKKDGFVITHGTDTMEETAYFL NLTAKCNKPIVLVGAMRPSNALSADGPANLYNAVAVAGDPSAAGKGVMVVMNDRVLGARD VTKTNTTGVETFQSPNAGQLATIHNGKVLWDATPVTKHTTQTQFKVDGLDKLPKVGVVYQ HAGVEGIQAQALVDAKYDGIVTAGVGNGNLHKSTFPIIERAAKDGIAIVRSSRVPTGSTT KDAEVDDAKYGFVSSGSLNPQKARVLLMLALTQTKDPKEIQKIFDQY >gi|301349834|gb|ADCQ01000016.1| GENE 9 8420 - 8647 145 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPLATGFARSSDVKSEVSRGHSRGDLKGRTLTTRVEVTTLMTNSSGPQNNVLEGGCHDAK RAEQRSVVYGKRRSS >gi|301349834|gb|ADCQ01000016.1| GENE 10 8650 - 9540 468 296 aa, chain + ## HITS:1 COG:CAC3514 KEGG:ns NR:ns ## COG: CAC3514 COG3344 # Protein_GI_number: 15896751 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Clostridium acetobutylicum # 27 285 67 325 470 287 53.0 2e-77 MAKSHWTKAEPRGCPLIDLVCFYLDDAAQKVIKNKGAPGIDGITYEQLPNLLRVHGEKIR QKLKNGTYIPAPVRRVDIPKPNGGTRMLGIPTLLDRTIQQAIVMTIGDAFEDQFSDKSYG FREGRNCQQAVQRAQKYIEDGNRWVVEMDLSKFFDRVNHDILMDRVSRVIDDKAILKLIR RYLNAGIMEDGLVSPRLEGVPQGSLLSPLLSNIMLTDLDRELETRGLNHVRYADDCNIYV KSEKAAQRVLTNITKYVEETLKLRVNRDKSGTFRPRDSVFLGYTFSKADCTRIVVA >gi|301349834|gb|ADCQ01000016.1| GENE 11 10023 - 12323 1913 766 aa, chain - ## HITS:1 COG:RSc2153 KEGG:ns NR:ns ## COG: RSc2153 COG0317 # Protein_GI_number: 17546872 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Ralstonia solanacearum # 60 746 28 728 735 613 43.0 1e-175 MAPNTATAGKSYAQKAADLFMTAVGMKSATKPEPKEDAFAEEKLNPVASANLLAERCRQY LSNSDVQKIREAFRYADQAHLGQFRNSGAPYITHPIAVAEILASWHMDAETIEAGLMHDV LEDTGITKIEMSEKFGVKVAELVDGVSKLDKLKFSSNEEAQAESFHKMLLAMSRDVRVIL IKLADRLHNMRTLGAVKQHKKFRIAKETMDIYAPIASRLGLFSVYRELSDMSFSYMYPIR YRVLEKKVAESRMRKKNALDQIYHETSDRLAARKIRGDVQGKNKSLWRIYSKMKERKIRF SEVLDVHSFRVLVPTRDDCYRALGVIHELYKPVPGRFKDFVAIPKANGYQSLHTTVIGPG GLMVEFQIRTEEMHHICEDGITAHWLYRDRNTSDQLQRNTMDWLNGLLEIQKQSGTSLEF MENIKVDIFPDRVYVFSPRGRIIQLPKGSTAVDFAYQIHTDLGNCTIGCEINGETAPLTR ELKNGEMINIIKGDKPTPNPSWLSSVRTGKARAEIRQYMRSLSEEGKIELGSKLLERSSK SHHLPYSKVTNEDWTRVCKANGFTDKNALLDAIGSGQKDSLLLLHQLTAPYTLKGNETAT TVQQSQEPVLALKGQICKLAPCCTPAMDDVIIGHYIAGTNTLHVHRKDCSHVQRGMRTDP ENWRDLQWNSQYKGGYPVKLDIELTNTHATLERLTSMIAQQHSSVTGFAMSQQNGVDKVE LTILVGDTKHLQKIINAIRTIDTVRLVSRHLESTPAMKPVDVEIDE >gi|301349834|gb|ADCQ01000016.1| GENE 12 12434 - 12634 295 66 aa, chain - ## HITS:1 COG:RSc2154 KEGG:ns NR:ns ## COG: RSc2154 COG1758 # Protein_GI_number: 17546873 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Ralstonia solanacearum # 1 65 1 65 67 88 69.0 3e-18 MARITVEDCLKKIPNRFQMVLVASVRARQLSQGHTPKIECKDKATVAALREIAEGVTGLE MLNGIR >gi|301349834|gb|ADCQ01000016.1| GENE 13 12653 - 13297 388 214 aa, chain - ## HITS:1 COG:RSc2155 KEGG:ns NR:ns ## COG: RSc2155 COG0194 # Protein_GI_number: 17546874 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Ralstonia solanacearum # 12 212 20 220 221 266 66.0 3e-71 MTNQSFKPRNAGSLFLVSAPSGAGKSSLVNALLAKIPGIALSISTTTRAPRPGEVNGREY HFTTVEEFLAARERGEFLESAEVHGNFYGTSKKWIEDTMAKGGDVLLEIDWQGARQVREH FPEAVSIFILPPSIQALEDRLHKRGQDSEQTITRRLLGAGAEMAHASEFDFVIINSVFEN ALNEFCAIVTASRLRFDKQAARCRDIFIQLGIPN >gi|301349834|gb|ADCQ01000016.1| GENE 14 13329 - 14297 928 322 aa, chain - ## HITS:1 COG:RSc1231 KEGG:ns NR:ns ## COG: RSc1231 COG0176 # Protein_GI_number: 17545950 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Ralstonia solanacearum # 1 312 1 316 319 327 56.0 3e-89 MTQLDQLASLTTIVADTGDIASIAKIQPQDATTNPSLILKASKDPAYRAFLTEAVENSVS LEDAADRVLVNFGAEILKYVKGRVSTEVDARLSFDVEKTIVKARRLIELYQEKGIDKERV LIKIAATWEGVQAARVLEKEGIHCNLTLIFSVAQAEIAANAGVTLISPFVGRIYDWFKKK AGADWDEEANAGENDPGVQSVRKIFERLKGLGAKTQIMGASFRNKGQIVALAGCDLLTIS PKLIEELSNSEEKFEKKLDVAKVSPIRAEPLTEAQWRFAMCEDEMASYKLDEGIRAFVKD TLTLKETLRQMRTETGKIWPQD >gi|301349834|gb|ADCQ01000016.1| GENE 15 14465 - 14956 628 163 aa, chain + ## HITS:1 COG:YPO3028 KEGG:ns NR:ns ## COG: YPO3028 COG3468 # Protein_GI_number: 16123205 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Yersinia pestis # 1 163 597 759 759 75 28.0 3e-14 MLDGRGVSGKVNNFGLGLSAEVGKKFGLTKDFFVEPQAQLAYYWIKGKDFSMSNGMKVEQ GDFNSWVGRLGLVAGKDFKDAEGNTKAQVFVKGGVKQQFAGKQKLYANSVQFKDELKGTS GYYGLGFEANPNKKVSLYGQLERENGKHYTKEIEVMLGLRCKF >gi|301349834|gb|ADCQ01000016.1| GENE 16 15388 - 16578 1146 396 aa, chain + ## HITS:1 COG:STM0066 KEGG:ns NR:ns ## COG: STM0066 COG0505 # Protein_GI_number: 16763456 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Salmonella typhimurium LT2 # 13 395 5 380 382 474 60.0 1e-133 MHNHLINDARPEAALVLADGAVFKGRSIGVSGMAVGEVVFNTAMTGYQEILTDPSYTGQI VTLTYPHIGNVGVNQDDVESSDVHVAGLVIRSESPVVSNWRGQRSLTEYLKQNGIVAIAE VDTRRLTRILRTTGAQTGCIVAAAEGKLTDNEIAVAAKTAAEAPRMVGQELASKVSTTYR YEWGEGTWRMDNGLGRPGSFQPEDYPYSVVAWDFGVKENILRLMADRGIHVHVVPARTTF EEAMALHPDGIFLSNGPGDPEPCDYAIEVAQKAIAAKIPLFGICLGHQILGLAVGGKTLK MKFGHHGANHPVVDLATKRVYITSQNHGFMVDEASLPENVQVTHKSLFDGSLQGFELKDA PVFCFQGHPEASPGPHDIQPLFDRFIANIQQYKESL >gi|301349834|gb|ADCQ01000016.1| GENE 17 16575 - 17177 605 200 aa, chain + ## HITS:1 COG:HI1181 KEGG:ns NR:ns ## COG: HI1181 COG0279 # Protein_GI_number: 16273103 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Haemophilus influenzae # 8 194 6 192 194 221 56.0 6e-58 MTDKVQTVRAALQEARSGLENLLSNEEMLGKVVKAADLMVASMQQGGKVMSCGNGGSLCD AMHFAEELSGRFRQDRPAYAAMSLADPSHMSCVSNDYGYEDVFSRFVEGIGREGDVLLGI TTSGTSKNVVKAAQAAKAKGIKVVALTGKPNTPICELADVAIITPAGRFADRVQELHIKV IHILIELIEAGMAEPNPSKE >gi|301349834|gb|ADCQ01000016.1| GENE 18 17184 - 20408 3844 1074 aa, chain + ## HITS:1 COG:RSc1521 KEGG:ns NR:ns ## COG: RSc1521 COG0458 # Protein_GI_number: 17546240 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Ralstonia solanacearum # 1 1072 1 1081 1081 1580 74.0 0 MPKRTDIKSVLIIGAGPIVIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPQT ADVTYIEPITKEVVERIIAKERPDAILPTMGGQTALNCAMELAKSGVLEKYNIELIGASP EAIEKAEDRLKFKEAMDKIGLSSARSGIAYSLDDALKVQAKIGFPAIIRPSFTLGGSGGG IAYNMEEFIQICTRGLELSPTHELLIEESLLGWKEYEMEVVRDSKDNCIIVCSIENFDPM GVHTGDSITVAPAQTLTDKEYQIMRDASIAILREIGVDTGGSNVQFAVNPKDGRLVVIEM NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGRTPASFEPTIDYVVVKTP RFAFEKFPKADKRLTTQMKSVGEVMAIGRTFQEALQKALRGLETGKDGLNEISTDRATIH HEISEPGPDRLWYLADAFRLGYTVKEAHRATRIDPWFLVQVKELVDIENRLKEYSLPELS KEEMLFLKKKGFSDRRIAKLLKVKEDQVRARRHELGIRPVYKRVDTCAGEFPTDTAYMYS TYEEESEVNPSDRRKIMILGGGPNRIGQGIEFDYCCVHASMALREDGYETIMVNCNPETV STDYDTSDRLYFEPVTLEDVLEIIDVEKPEGVIVQYGGQTPLKLARALEANGVNIIGTSP DSIDAAEDRERFQHLLQNLGLHQPPNRTARTEEEAIRLADEIGYPLVVRPSYVLGGRAMD IVHDRSELERYMREAIKVSFDSPVLLDRFLDDAVEMDVDAVSDGKEVRIGGVMQHIEQAG VHSGDSACSIPPYSLDPALVEEVKRQTREMARALNVVGLMNVQFAIQHAFSDHPEIFVLE VNPRASRTVPFVSKSTGQQLAKIAARCMVGQSLEEQKQPVEVELDHYSVKEAVFPFAKFL GVDPVLGPEMRSTGEVMGVGRSFGEALFKSQLGADSAIPKSGRVFISVKEEDKPRLPQLA KNFTEAGYQLVATRGTAKVIREAGYRCDVVNKVSEGRPNIVDELKNGTIQLVIAVAAESR SEIADASAIRIASLANHVTFYTAMANALAVIEGIRHMQDTEVYAQQELHKHLQH >gi|301349834|gb|ADCQ01000016.1| GENE 19 20463 - 21467 814 334 aa, chain + ## HITS:1 COG:PA5172 KEGG:ns NR:ns ## COG: PA5172 COG0078 # Protein_GI_number: 15600365 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Pseudomonas aeruginosa # 1 334 1 334 336 494 68.0 1e-139 MPFNLKNRSLLSLVNHAPEEIDYLVSLAEDLKKAKRAGTERPQLRGKSIALIFEKTSTRT RSAFEVAAYDQGAHTTFFDPAVSQIGHKESIKDSARVLGSMYDAIEFRGFKQETVEELAE YAGVPVFNGLTDEWHPTQMLCDLLTMKEASGKRWKDISFAYLGDARFNTGNSLLLVGAKM GMDVRIGAPKAYWPSQELIDMCREFAKASGARITITEDPEAAVKGVDFIHTDIWVSMGEP KEVWDERIEALLPYQVNKKLMEASGNPNVKFMHCLPAYHNTETKVGEAVIKAHPELAGGV EVTEEVFESPASIVFQQAGNRLHTIKAVLVSSLA >gi|301349834|gb|ADCQ01000016.1| GENE 20 21612 - 22085 570 157 aa, chain + ## HITS:1 COG:RSc1522 KEGG:ns NR:ns ## COG: RSc1522 COG0782 # Protein_GI_number: 17546241 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Ralstonia solanacearum # 3 157 4 158 158 181 65.0 5e-46 MPIPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGR ILELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRIS VASPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI >gi|301349834|gb|ADCQ01000016.1| GENE 21 22107 - 22646 222 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|56478165|ref|YP_159754.1| RNA-binding protein [Aromatoleum aromaticum EbN1] # 1 161 1 156 156 90 36 4e-17 MSQLVLDRNARLLLQAKAHHLDPVVLLGGNGLTEAVIKEVDRALTAHGLIKVKIPSDDRE ERTAIFEELADKLGAAKITQIGKLLVLFRPIPEKEETEETPKVKKAAPAAARKTGAKARN NRKRLTEMIQNKNKEAKSLPWAKTVKKGKTPKGQVKAVGAKGKTLGSRLASKNKGISEE >gi|301349834|gb|ADCQ01000016.1| GENE 22 22685 - 23329 607 214 aa, chain + ## HITS:1 COG:RSc1525 KEGG:ns NR:ns ## COG: RSc1525 COG0293 # Protein_GI_number: 17546244 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 23S rRNA methylase # Organism: Ralstonia solanacearum # 7 214 3 218 221 233 55.0 2e-61 MPVSEKKLRSNPAWIKRHLTDPFVKKSVQEGYRARSVYKLMEIDDKDKIIKPGMSVVDLG AAPGSWTQIVKERLTDKDGKIDGKVIAMDILPMEPIEGVHFLQGDFREQEVADKLTDLLE GEKVDVVLSDMAPNLSGVAAADAARCLLLNELALDFAKENLKKNGSFVCKVFQGSGYSQY VEACKKTFRKVSVRKPEASRSSSAEVYIVARDLK >gi|301349834|gb|ADCQ01000016.1| GENE 23 23427 - 23990 480 187 aa, chain - ## HITS:1 COG:no KEGG:Mevan_0161 NR:ns ## KEGG: Mevan_0161 # Name: not_defined # Def: hypothetical protein # Organism: M.vannielii # Pathway: not_defined # 3 159 8 164 164 151 48.0 1e-35 MRSITSFDLQYAHRFLNFQGEAQYLHGHTGVLTIEVEDTIEPGVNMVFPCNEIRKTAWEV LKNFDHALILREDDPLLPAILAVYDAQGIRNGAPSNRMKGAPVKTDLITCYPDCRLVVTK ETLTTEGMIKIAYDLLKDKLNIAKITFTSGVNAASQEYKPQGTVDRCPLCGIALDENGVC PKCGYRK >gi|301349834|gb|ADCQ01000016.1| GENE 24 24032 - 24439 252 135 aa, chain - ## HITS:1 COG:BH0951 KEGG:ns NR:ns ## COG: BH0951 COG0735 # Protein_GI_number: 15613514 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus halodurans # 7 135 16 144 145 95 34.0 2e-20 MLLKAMTNSRNTIQRQLVLSAVRQLQNHPTADEVYQEVQKNCPTISRATVYRNLKLLAEE GEIRLRNISGSPERYDHICSNHYHLRCEQCGKVMDVEMPYMAFLDEEVRKRNEYLIKSHD LTFVGLCPECAKKKH >gi|301349834|gb|ADCQ01000016.1| GENE 25 24580 - 25539 1156 319 aa, chain - ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 5 316 54 365 367 349 54.0 5e-96 MNNLEKWDKTFPQDDRVEHKKVSFYTRFGTRLIGNLYCPKGVSGDLPAIAVCGPFGAVKE QASGLYAQTLAANGFVTLAFDPSFTGESSGFPRNLASPDISTEDFSAAVDYLSNLKGVDH NKIGVLGICGFGGFALNAAAIDTRIKATVTSTMYDMSRVNTYGYFDKMDKNARYALKQEL NAQRTEDTKDGTYAPGAGLPDKLTGDEPQFVKDYWEYYKTPRGFHPRSINSNGHWNKTSA LSFINTPLLTFADEIRSPVLMIHGEKAHSLYFSKDAFKKLTGDNKTLMIIPAANHTDLYD NMKYIPMREIVAFYKKSFS >gi|301349834|gb|ADCQ01000016.1| GENE 26 25729 - 26634 606 301 aa, chain + ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 284 1 281 291 179 34.0 8e-45 MNLRSLRFFLAVAENNGVQKAAESLHLTQPNISRALKALEEELNAQLFVRTARGVEITEE GELLRMRAEEILSLVDKTKAEFVDSKGSELSGEVRIAAGESEGMRNVIRAMSLFKAIHPK VEFSVTSGNSANVAYQLNVGLSDLGIVFDPFDVSKYEYTRLPWKEDWCVYLRKDDPLAEE PFVTPQMLRDRPLILSAQTRGAGFLKSWLGHSLEELNVVAYFTLINTPKLMVEEGLGLMI SFDNLIDLDPNGPLMIKPLAPKLHSATYLIRKKEKVLSRAAQAFHEYLKDYALSAEAAQN N >gi|301349834|gb|ADCQ01000016.1| GENE 27 26731 - 30177 3545 1148 aa, chain + ## HITS:1 COG:RSc2205 KEGG:ns NR:ns ## COG: RSc2205 COG0587 # Protein_GI_number: 17546924 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Ralstonia solanacearum # 5 1089 6 1115 1173 1006 49.0 0 MTQDFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASAAG IKPILGGDCSITNHYNRDDYLRLLFLARNHQGYLTLCDLLSRAWLTNQYKDRGEVDLDWI TPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKFPHFFMELQRVGRPNDEML VAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANKARPRIYTPQQYFR TKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMSLKDYMAQLAREGL DRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQDFINWAKTHGCPVGP GRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDFCQNNRGRVIEYVKS KYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTRPGHNTTLEEALSEE PQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLIDFCPLYAAGMLPENV ISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRPDIEHMECDDEDTYKKIF QTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLIPDFLDIRAGRKKAE YADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMGKKDVAEMERQSKVF IEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGWLKNYYPAEFLASSL SEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRMGLGALKGVGSAPAE AIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEPNRRKWFENADVVVQ SAQENEKAADQFSLFGEEPSNEVPIKEVAPWSDRTRMEKEQYVLGFYFSGHPLEAYQSEL KRNFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSPFVTLHLATPDGPVDYSVKNQYF EQERVRIKEIPKGEIVVVELKKSHSKKSGKTWASPGAFYPLYELRHRQRAHIVIQPAEEA DPKELERLILDVQMTHPEEAIRVDFEFSDDRSFRVRLPCPYKAAADWTLVRDLEDSPSIR QVEVAYGL >gi|301349834|gb|ADCQ01000016.1| GENE 28 30371 - 32407 1641 678 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 4 601 2 597 636 636 54 0.0 MNKNNLFAKVAVWIVIALVLFTVFKQFDGAKKMVANEPSTSYTQFMDQAKEGKIKRVDVQ GRTLTVTPTEGAAYKITAPGDLWMVEDLRKAGVQVYGQPDEEQSFLASIFISWFPMLILI GVWIFFMRQMQGGGKGGAFSFGKSKARMLDSSNNNVTFADVAGCDEAKEEVTEIVDYLKD PSRYQRLGGRIPRGVLLVGSPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAARV RDMFENAKKNSPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQMLVEMDGFDTNSSVIV IAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREQILKVHMRKIPVGADVDESVLARGT PGFSGADLANLVNEAALFAARRNGRVVAMEDFERAKDKIMMGAERKAMVMSEDEKRNTAY HESGHALVARLMPKSDPVHKVTIIPRGRALGLTMQLPAEDHYSYDKQYLLSRIAILFGGR IAEEVFMHQMTTGASNDFERATQMARDMVVRYGMSDVMGPMVYGENENEVFLGRSVTQSK HISESTMEKVDAEVRRIIDEQYAIARKLIESHQEEMHKMAHALLEWETIDAEQIDDIMNG KDPRPPKQLSKVRRKNEEAAQPAEGEQTAQAAPAEKKTEQAPQTESPEPEANAKPAEAPS EEVKPEDKPKDSDDRPKA >gi|301349834|gb|ADCQ01000016.1| GENE 29 32568 - 33143 692 191 aa, chain + ## HITS:1 COG:RSc2152 KEGG:ns NR:ns ## COG: RSc2152 COG0782 # Protein_GI_number: 17546871 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Ralstonia solanacearum # 11 185 13 184 187 196 60.0 2e-50 MNEDLEFKDIDEDDEEEVKIPEIHGTKNYMTRACYNRLLDERKNLVLVERPNVVNVVAWA ASNGDRSENADYQYGKQRLREIDRRIRFLNKRIEASEVIDIDKRPPTDQIFFGATIVYAN EQGDESKIRIVGIDEADASVGDVSWISPIARVFLKHFEGDTVLLPTPKGVKKLEILEVTY VNDPPGKPHII >gi|301349834|gb|ADCQ01000016.1| GENE 30 33161 - 34240 947 359 aa, chain + ## HITS:1 COG:RSc2712 KEGG:ns NR:ns ## COG: RSc2712 COG0809 # Protein_GI_number: 17547431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Ralstonia solanacearum # 13 355 10 348 362 358 52.0 9e-99 MAGQAMETKEQHLSDFDFELPESLIAQYPLKDRAASRLLHVKPDGSVEDLHFRDILNLLK PGDLLVFNNTKVIKARLNGKKETGGVFEAMTERVTGTYEAISMMRASKAAKPGTILYFDH PEGKEPARAEVLGREGEFFRLRFDHPVLEVLDEYGKVPLPPYIQHAAEKSDESRYQTVYA KYPGAVAAPTAGLHFTDELLQQIRDKGCEEVFVTLHVGAGTFQPVRVENLSEHVMHSEWY SISPEAAEKINKAKTERRRVVCVGTTSLRTVEASASQNPEGKVRAESADTRLFINPGYEF KVCDAMVTNFHLPKSTLVMLVSALCGRDEILSAYKHAVDEKYRFFSYGDACFLEQKVNQ >gi|301349834|gb|ADCQ01000016.1| GENE 31 34237 - 35370 1339 377 aa, chain + ## HITS:1 COG:RSc2713 KEGG:ns NR:ns ## COG: RSc2713 COG0343 # Protein_GI_number: 17547432 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Ralstonia solanacearum # 3 361 2 367 383 593 74.0 1e-169 MSLTFKLHKTEGFAHRAEIHLNHGVVQTPVFMPVGTYGTVKAMSPLELNEIGTQILLGNT FHLWLRPGLEVIAEHGGLHGFMGWEKPILTDSGGFQVFSLGKLRKITEEGVRFASPINGE RLFLTPEVSMEIQKVLNSDIAMIFDECTPYEIDGRPATEKEAADSMRLSLRWARRSRDEF DRLQNPNALFGIVQGGMFEHLRDESLEGLKAIGFDGYAIGGLSVGEPKEEMMKILDHLKT RMPEDKPRYLMGVGTPEDLVEGVKRGIDMFDCVMPTRNARNGWLFTRYGDIKLRNAKHKH DLRPLDESCDCYCCRNFSRAYLHHLQKVNEILGARLNTIHNLHYYLNLMKEIREALDQGN FEAWCKKFAEDRARGTD >gi|301349834|gb|ADCQ01000016.1| GENE 32 35646 - 35996 478 116 aa, chain + ## HITS:1 COG:RSc2714 KEGG:ns NR:ns ## COG: RSc2714 COG1862 # Protein_GI_number: 17547433 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Ralstonia solanacearum # 27 115 23 107 109 86 48.0 1e-17 MFISEAYAQAASGAAAQPGGLESMFSSFGVMILIFAVFWFLLIRPQQKRQKEHKKMIDSL TTGNEVITAGGICGKIVAADENYINLQIAAVDDKPVVITFQRVAIQAVLPKGTVKF >gi|301349834|gb|ADCQ01000016.1| GENE 33 36131 - 37999 2255 622 aa, chain + ## HITS:1 COG:RSc2715 KEGG:ns NR:ns ## COG: RSc2715 COG0342 # Protein_GI_number: 17547434 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Ralstonia solanacearum # 1 620 11 625 626 725 60.0 0 MIAVILIVAAVYTLPNFYGESPAVQVSPGKATVKVTEQTLKTVEDALAAAQIKPNGVFFE QGAQQNSVRVRFAPTDGELQLRSRDVLEKALNPDPADPSYIVALNLVPNTPTWLLKINAL PMYLGLDLRGGVHFLLAVDMKAAVTKRIEAATGEVRTLLRDHKIRHAGIVRVGDTLEISF RNEQDLEAAMDVLRNRQTDLTFAKEDQNGKFMIRATMSQKAMSDVQSYALKQNVATLHNR INELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDILGRTATLEVRMVDDSPEALAQLSQG TVPFGTERFKDREGRDILVKRQVVLTGDNLNDAQPGFDNQTHEPTVNLTLDAKGARIFKD VTRENVGKRMAIILFEKGKGEVVTAPVIRQEIGGGRVQISGRMTTVEATDTALLLRAGSL AAPMEIIEERLVGPSLGAANIKAGFESTLWGFIAVSVFMVIYYHLFGVFSAIALTCNLFL LVAILSMLQATLTLPGIAAMALTLGMAVDANVLINERIREELRENRTPQQAIKEGYDMAF NTILDSNITSLIAGIALLIFGSGPVRGFAVVHCLGILTSIFTSVMVSRALVNLWYGRRKK LTSLSIGQIWRPDADKSTAKGA >gi|301349834|gb|ADCQ01000016.1| GENE 34 38002 - 38937 1012 311 aa, chain + ## HITS:1 COG:RSc2716 KEGG:ns NR:ns ## COG: RSc2716 COG0341 # Protein_GI_number: 17547435 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Ralstonia solanacearum # 1 303 1 308 322 358 61.0 5e-99 MELFRIHKTIPFMKYSKILNAISFISFFIAIGLLVVRGLAFSIEFTGGLVMEVNYPDAVP VQELRVDLEKATGGEVQVVNFGTARDAQIRLPLKGNKTSAQMSEEVMKVIHEKAPEAQLR RTEFVGPQVGEELATDGLTALLLVIVGIMIYLAFRFEWKFAVAAIIANMHDVFLVLGVFS LFQWEFSLPVLAAVLAVLGYSVNESVIIFDRCRECFRKIRKGTPVEIVDTAITQTISRTV ITHSSTLMVTLSMFFFGGPALHYFALALTIGILLGVYSSVFVSAAIALYLGVKREDLVKK VRKDEISDMVP >gi|301349834|gb|ADCQ01000016.1| GENE 35 39069 - 39626 369 185 aa, chain + ## HITS:1 COG:PA0563 KEGG:ns NR:ns ## COG: PA0563 COG3152 # Protein_GI_number: 15595760 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 7 114 3 114 117 59 32.0 3e-09 MKTAFRWFIFSVSHVEDFHGRAGRVEVWSFVFFQCIFLALAAGIDLLFTGFPIVLPIYAA LTSIPSVLLFIRRLHDCGYSGWWVFPAIVPPICFFVMCWAPDPAQPNKYGTTERLPSKNL RAKTVPPLIDGIEYLTPPPMPFEPAVKRREELFEKEQKEIIEQEKVPNSKETQNEKDIRQ TGQKD >gi|301349834|gb|ADCQ01000016.1| GENE 36 39589 - 39921 637 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860375|gb|EFL83452.1| ## NR: gi|302860375|gb|EFL83452.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 110 1 110 110 95 100.0 1e-18 MKKTSAKQAKKIEKRILAVVADLKKAKKARKIEHIEMAEKFLANLTAKLDVAAADLKAKK EKLILAQEAKENAKAQAAEYKEGGKEAKAEEKAADEGKAKEAKVKEAAAK >gi|301349834|gb|ADCQ01000016.1| GENE 37 40000 - 40662 718 220 aa, chain - ## HITS:1 COG:mll1133 KEGG:ns NR:ns ## COG: mll1133 COG2197 # Protein_GI_number: 13471221 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Mesorhizobium loti # 8 214 11 214 227 115 33.0 6e-26 MVKPQTILLVDDHSLITTAMSALLQSMYPDVQIHVGATAKEAVELAEKYGDSADLMILDL GLPDSQGTDLLVRLLQNYPALKILVLSGNCDPDSILKALSAGAAGYVPKTLDANLLKSTI NFVLEGGVYIPSKILSQQQSMGMSPQQPVVNPSSKVHLTTRQCQVLKLLSQGDSIKTICR KMDLSEGTIKTHVTALYRAFDARNRTEALIAARRNGFNVD >gi|301349834|gb|ADCQ01000016.1| GENE 38 40745 - 41794 1266 349 aa, chain - ## HITS:1 COG:alr0698 KEGG:ns NR:ns ## COG: alr0698 COG0309 # Protein_GI_number: 17228193 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Nostoc sp. PCC 7120 # 9 349 22 367 367 323 47.0 3e-88 MSEEKKHYQRPLNFKTGKVEMNFGAGGKASAQLIADLFAKNFSNEFLDQGDDGARLPQPK GELVMATDSHVVSPIFFAGGDIGGLSIHGTVNDVAVCGATPLYISCGFILEEGFPLSDLK RIVESMAAAAKEAGVKIVTGDTKVVERGKADGIYINTCGVGVLPEGVRLSGANCRPGDVI AISGDIGDHGVAVMSQRVNLGFETGVVSDSASLNRLTEKLVAEIPSLRCMRDPTRGGLGT TLNEIAKQSSVGMVLEEDKIPVKESVEAACEFLGLDPLYVANEGKVIAICAPEEAEKMLQ IMRDDPLGKNAQIIGRCIEDENHFVQMETGFGGVRMVDWLTGEQLPRIC >gi|301349834|gb|ADCQ01000016.1| GENE 39 41814 - 42920 1079 368 aa, chain - ## HITS:1 COG:aq_1157 KEGG:ns NR:ns ## COG: aq_1157 COG0409 # Protein_GI_number: 15606409 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 7 365 12 376 380 432 55.0 1e-121 MKYITEYRDKELAKKLVADIAKEARPDRNYRLMEFCGGHTHVISRYGLEGILPKNVRMIH GPGCPVCVMPIGRIDSAIELALEHGVILCTYADTMRVPASKGLSLMKAKAQGGDIRMIYS AADCLDIARANPDRNVVFFAIGFETTTPATAVVLKQAKAEGLKNFFVFCNHVLTPPAIRH ILKNQEKVQIEGFVGPAHVSTIIGSEPYETFAKDYSKPVVIAGFEPLDMLQSILMLIRQI NRGEAKVENEFTRAVRPEGNMKAIRMMEEVFALRDSFEWRGLGSVPKSALKLSDAYSDFD AEKHFNLVYRSVPDNKACECGAILRGEKQPSDCRAFGTVCTPESPIGSCMVSSEGACAAY FTYGRHKR >gi|301349834|gb|ADCQ01000016.1| GENE 40 42917 - 43150 359 77 aa, chain - ## HITS:1 COG:AF1369 KEGG:ns NR:ns ## COG: AF1369 COG0298 # Protein_GI_number: 11498965 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Archaeoglobus fulgidus # 1 77 1 76 77 68 49.0 3e-12 MCLAIPVQIKEIIDENTAVAEISGLKKTISTALLEDVKVGDYVILHVGYALQKIDPEEAQ KTLALFASEASATGEPA >gi|301349834|gb|ADCQ01000016.1| GENE 41 43156 - 45462 1424 768 aa, chain - ## HITS:1 COG:aq_672 KEGG:ns NR:ns ## COG: aq_672 COG0068 # Protein_GI_number: 15606085 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Aquifex aeolicus # 9 755 7 739 746 558 41.0 1e-158 MSSSIRAEKLRIKGTVQGVGFRPFVFVLAKNEGLTGTVLNDGRGVEAVLEGSSEALERFR TRLLKELPPLASIESVEAEDVPVEGRQDFVILESRSNSVSTVIPADAAVCEACLKELTDK NNRRYRYPFINCTHCGPRYTITAHLPYDRPQTSMKAFPMCPDCLQEYKNPLDRRFHAQPN ACDVCGPHLELKDKKGNLVLCEDEIAELLRQIQDGKIAAVKGLGGFHLVCDAGNAAAVSE LRQRKHRPFKPFAVMALNDLSASRFVRISEKASKELHSPQAPIVLCPKTEDADRLLPGIA PELNRIGVMMPYTPIHWLLFFEAMGRPEDPDWYKKECDLVLVMTSANAGGEPLVIGNDEA VQKLDGIADLFLTHNRDILIRCDDSVMQQREKDVQLIRRARGFTPVAVRLPYGGSSVIAT GPWLKNTACLTKDDHAFLTQHIGDTDRVSNCRTLARAVEHLSEIFEITPKYIACDLHPDF FSTSLAEELADKYDAELIPVQHHHAHIAAVMAEHGLSEPVLGLALDGVGLGTDNKPWGGE LLKVTPESFERLNSIAPITMPGADKCAREGWRMAAKIFAEDGKAEALEKLAQEVSKPSLH LITAQANAPETTSLGRLFDAAASMFGICHVSSYEGEAPVRLQAASEGRQGQNRTDLVEVI DGHPNFVPLLLALSEYTDIQQAAADFQETLAQVLAKEVIRASERENIQKVCLSGGCCLNS LLTQRLRELLERHELQVYEGLKVPPNDGGVSLGQAWVVLMRLHSTAKE >gi|301349834|gb|ADCQ01000016.1| GENE 42 45466 - 46140 743 224 aa, chain - ## HITS:1 COG:STM2855 KEGG:ns NR:ns ## COG: STM2855 COG0378 # Protein_GI_number: 16766161 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Salmonella typhimurium LT2 # 7 215 76 284 290 285 66.0 4e-77 MEKINDRLVQLEIDVLSANDKKAAQNREKFIAEGILALNLVSSPGSGKTTLLCNTINKIK DQYKLAVIEGDQQTLNDAERIRATGCRAIQINTGEGCHLDADMIEEACQKIKPEPNSILF IENVGNLVCPAAFDLGEDCKVVVLSVTEGEDKPIKYPDMFAASSLMLINKVDLLPYVDFS VEKCKEYARRVNPNIEFIEVSATKGTGMDAWCEWLGKRFAAVSK >gi|301349834|gb|ADCQ01000016.1| GENE 43 46211 - 46393 186 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCVTCGCGGKKATVEELDQTKTHEHPHAEDGHVHRDSDQHRHHHDAGHHEHGSAGAHKHE >gi|301349834|gb|ADCQ01000016.1| GENE 44 46415 - 46762 390 115 aa, chain - ## HITS:1 COG:STM3144 KEGG:ns NR:ns ## COG: STM3144 COG0375 # Protein_GI_number: 16766444 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Salmonella typhimurium LT2 # 1 112 1 112 113 78 39.0 4e-15 MHEMSLAQSIVEIVENTAQQNQASSVVAVKLIIGELAGVEMHALMQGLKIASQGTVMQEA KIEIERPGGTAWCLKCQKTVPIHRRGEPCPVCGSYQLSVNGGDDFRVSELELGDS >gi|301349834|gb|ADCQ01000016.1| GENE 45 46755 - 47849 1132 364 aa, chain - ## HITS:1 COG:no KEGG:Slit_2426 NR:ns ## KEGG: Slit_2426 # Name: not_defined # Def: putative hydrogenase expression/formation protein HupK # Organism: S.lithotrophicus # Pathway: not_defined # 226 364 224 360 360 71 29.0 6e-11 MSYLGAIRFVLTTDGCSVSDVSIEPAKELRIEKLLCGKRVEDALALLPPLFALCPDSQTA AAAVACDVAQNSVPSQEVLVKARFANHLELINEGVRFFALQCAGEDYRAAKIKSVIRVRE LVSELREMPYEDQTKRNKLWSELRGEVSYLLLDGFSESWEQDLFNGTITPSKDSLTAFFD KISSHRSRGYTSGPLLDKPTAFILQALKERGCWKNGSLESDVRSLTGPVARMRKNPTVAG LLMSDGNTNYTRFVARFIEVLSAADLICMPLETIAAMELGKGNAVSLVQNSRGILLHAAK IIDGVIENYRILTPTEINVVDSEWFKKTLLNLKAKDAEELKKLAELTILSFDPCTQMDVE LKNA >gi|301349834|gb|ADCQ01000016.1| GENE 46 47846 - 48445 523 199 aa, chain - ## HITS:1 COG:no KEGG:Rfer_4094 NR:ns ## KEGG: Rfer_4094 # Name: not_defined # Def: hypothetical protein # Organism: R.ferrireducens # Pathway: not_defined # 21 188 9 160 165 105 35.0 1e-21 MIKTNAPTTQNPQSEEPWAPNPAQRLERGFNRIWQTRMQGLPMLHPRVHVQAVGFHKWKY FWLGIIVTPWCMNVILAKGQPSKWKSIPEGRRLHYPFPAGIYDFISVKDRILGEYQMCSL MSPLEEVVSDHDMAVEIAKAALEELMKPEQEPELGEPIPAIQPEVDPETIEKAVETAINR PISRRSFLRPKATQEEQES >gi|301349834|gb|ADCQ01000016.1| GENE 47 48402 - 48662 276 86 aa, chain - ## HITS:1 COG:STM1533_2 KEGG:ns NR:ns ## COG: STM1533_2 COG1773 # Protein_GI_number: 16764878 # Func_class: C Energy production and conversion # Function: Rubredoxin # Organism: Salmonella typhimurium LT2 # 17 71 14 68 75 65 54.0 3e-11 MPGFEGTFLGDSSKLHPDTRLECKVCHYIYDPAKGDVDQNIEPGTPFSELPEYWNCPVCG CERDLFMVVPEDYDQNQRSDDSESSK >gi|301349834|gb|ADCQ01000016.1| GENE 48 48662 - 49567 1171 301 aa, chain - ## HITS:1 COG:no KEGG:Pnap_1968 NR:ns ## KEGG: Pnap_1968 # Name: not_defined # Def: HupH hydrogenase expression protein # Organism: P.naphthalenivorans # Pathway: not_defined # 4 289 2 285 288 189 36.0 1e-46 MITKPISIPINLLGPGSQPERSVANTIGVPDIVDTFRQPYTPEVANKATAEKCRQFFIDL YEEMRLWNMDSGDAGPAFAMNGYDKDTLALINQMLGEGEVAIRISIPNETFDEIRIQESI FVGVWRVCYYRDGQQIADQLEVSAIPSCVAEAAYVTSQPDLHPVEFGPEAMNSPAIIAEL KEALKAWEPGAPAFTINLSHLPMSAEDHKVIEAAVGAGAVQMMSRGFGNCRISSTDVRHV WKVQYLNNAPARLMILNTLVVAGLPEEAVAASEDLADSAVRIKELIEWVTKSWELSPVEV K >gi|301349834|gb|ADCQ01000016.1| GENE 49 49591 - 50037 506 148 aa, chain - ## HITS:1 COG:no KEGG:Mlg_2024 NR:ns ## KEGG: Mlg_2024 # Name: not_defined # Def: hydrogenase-1 expression HyaE # Organism: A.ehrlichei # Pathway: not_defined # 14 145 2 133 145 93 34.0 3e-18 MELMGTSPKIDLYSHPLFLRMVNEHGFESCDKDTFPQFLQKPGLSMVVFIEDPNRMKETM DALVIAPELAKSCGLIEHKAVVGPPNARKLAVTYGFKRWPALVFFRDGKYLGAVDGLRLW ADLVREADEIMHSEPHYPPSVGIPVRSI >gi|301349834|gb|ADCQ01000016.1| GENE 50 50037 - 50345 390 102 aa, chain - ## HITS:1 COG:no KEGG:Mpe_A2821 NR:ns ## KEGG: Mpe_A2821 # Name: not_defined # Def: hypothetical protein # Organism: M.petroleiphilum # Pathway: not_defined # 9 79 14 84 110 63 42.0 3e-09 MKVESLPYPGRAVCSGRGQTENLDVLMLGDVQIGEWVLAWNGMGTKKITEERARQVDAAL DALEAAMNGQTPDVEDAFADIVANTGKLPPHLQAQLDKKEKH >gi|301349834|gb|ADCQ01000016.1| GENE 51 50363 - 51019 697 218 aa, chain - ## HITS:1 COG:STM1536 KEGG:ns NR:ns ## COG: STM1536 COG0680 # Protein_GI_number: 16764881 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Salmonella typhimurium LT2 # 16 208 6 195 202 141 40.0 1e-33 MAILDMQNLKDIPCLILGIGNILWADEGFGVRVVEAFNDKYAFTDPNNVIADGGTLGMYL YDRICRAEKLLIFDCCDFKGKPGELRVLRNDDVKLWTATKISPHQTGMNDLLVAAAVRGA IPNDIAVVGFQPVLLDDYGGSLSAEAKGKVDEAVRDGYEIVRGWNVGLRVRSEDEMAPAL MDAPCLNIDQYESGRPSAEEACRDGDIRFARFVAKADK >gi|301349834|gb|ADCQ01000016.1| GENE 52 51152 - 51499 213 115 aa, chain - ## HITS:1 COG:Cgl1005 KEGG:ns NR:ns ## COG: Cgl1005 COG3093 # Protein_GI_number: 19552255 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Corynebacterium glutamicum # 32 101 10 79 99 84 52.0 4e-17 MARSSDQTNGQNSGGIPPLRGRISRSSRSAPHPGAFLESRFLEPLGISQAELAQAIGVSR RRINELIVGKRSISTDTAIRLSRYFHTDPEFWLSLQMRWDIHQALENENAEEKIS >gi|301349834|gb|ADCQ01000016.1| GENE 53 51508 - 52278 948 256 aa, chain - ## HITS:1 COG:STM1788 KEGG:ns NR:ns ## COG: STM1788 COG1969 # Protein_GI_number: 16765129 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Salmonella typhimurium LT2 # 19 233 20 235 243 158 42.0 8e-39 MKISKWAYSIEEGPIEPVYVYEAPVRFWHWAQCAAFFMLVITGFLIGWPPIANYATTWDT YFFGNIILLHLVCGMLFAVLMLYRIYWAFVGNKYSRMIFILPFWDMEWIKGIFGTALYYL FLNKHPKEYVGHNPLAQTAMCLMYVLGSILIILTGLGLYAEQWGWDTGWMSWFGWVTAWL GGPQPVRTFHHLLMYYLLIFLCAHLYMSFREDIMGGGTQVSTMINGIRFFKEPIRQPGNE DIPPSDIPNASSANKA >gi|301349834|gb|ADCQ01000016.1| GENE 54 52291 - 54060 2324 589 aa, chain - ## HITS:1 COG:STM1538 KEGG:ns NR:ns ## COG: STM1538 COG0374 # Protein_GI_number: 16764883 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Salmonella typhimurium LT2 # 2 589 15 600 600 768 59.0 0 MANKKVVVDPVTRIEGHLRMQAVLDENNVIVDAMSTGTMWRGLEVILKGRDPRDAWAFVE RVCGVCTGIHALSAVRAVEDALGIQIPKNANIIRNLMNATLYSQDHLTHFYQLHGCDWID VVSALSADPKKTSEIQQSISTHALSSPAYFKEVQDRLKAFVASGQLGIFANAYWGNPGYK LPPEINLLGVTHYLESLDFQREIVKVHAIVGGKNPHPNYLVGGVPCPINMSDTGAQGIMI NQVWMNFLRDVAKSTIRFIDEVYYPDLMAMQAYYKDWYKIGGGLANKNLLCYGDFPAYAN DMSEKSLVMPNGAVIDGKFDQILPVDLKDPNQIKEFVDHSWYSYPKPDEGLHPWEGITDP NFDLGKAGVDYEGTKTDIKWLTTNARYSWIKAPRWNGHAMETGPLARMVVAYAKKMPRQK ELVDRALAQAGVPVEALFSTLGRTLCRGLEAKMCAQLMLEYVDELEANIKAGDEVAANMD KWEPSTWPKECKGVGQCEAPRGALGHWCVIKDGVIENWQAVVPSTWNASPRDTKGQLGAY EAALLGTPVAVADQPLEILRTIHSFDPCLACATHVMSTSGEELCKVQVR >gi|301349834|gb|ADCQ01000016.1| GENE 55 54060 - 55136 1145 358 aa, chain - ## HITS:1 COG:STM1786 KEGG:ns NR:ns ## COG: STM1786 COG1740 # Protein_GI_number: 16765127 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Salmonella typhimurium LT2 # 1 346 11 352 372 477 64.0 1e-134 MRRQGVSRRSFLKFCSLTAASLGLGANGAADIAHAMETKPRTPVIWLHGLECTCCTESFI RSYHPLTKDVILSMISLAYDDTLMVAAGEQDHQALEDVMKKFNGNYILAVEGSPCLGADG MFCLPGGKPFLEKLMHVAKGAKAVIAWGSCSSWGCINTAKPNPTKSVPITDVIKDKPIIR VPGCPPIPEVMTGVITYMLTYDRLPPVDAQLRPKMFYGQRNHDKCYRRAHFDAGQFVEKF DDIGAKLGYCLYKVGCKGPVTYNSCSSIRWNDMLSWPVESGHPCLACSEDNFWDKGSFYA HEPTILPPSWGLGIQATADRVGLAALGVMGAAVAVHAAASAVARAKSKEVNKDMGVNE >gi|301349834|gb|ADCQ01000016.1| GENE 56 55556 - 56251 618 231 aa, chain + ## HITS:1 COG:HI1089 KEGG:ns NR:ns ## COG: HI1089 COG4133 # Protein_GI_number: 16273017 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, ATPase component # Organism: Haemophilus influenzae # 4 212 3 208 212 177 47.0 2e-44 MSEEKAKLELQSVRCVRGERLLFSKLNFQCAAGTLVRIAGPNGTGKTSLLRLLVGLMQPQ EGQILWKNEPIKKLKEEFWKDLVYIGHLNGVKDELTARENLLINCEIGEHPVTKEQADHA LAMVGLEGFEDHYTRHLSQGQRRRVALARLYLSRHAGFWVLDEPFTALDVKAVANLANLI AEHVNEGGIVAFTTHQEVPIAANNVQRIELTGGRWLNGRMVKKHDLAGEVA >gi|301349834|gb|ADCQ01000016.1| GENE 57 56254 - 56922 678 222 aa, chain + ## HITS:1 COG:PM0006 KEGG:ns NR:ns ## COG: PM0006 COG2386 # Protein_GI_number: 15601871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Pasteurella multocida # 4 222 2 220 221 155 49.0 7e-38 MFRLFLAVVRRDLKLALRQKSDVLNTVFFFIVVVTLVPLGIGPDQQLLRMIAPGVVWVAA LLAALLSLPRLFANDYADGTLEQMLLSGEPLTVIVIAKVFAHWLTTGIPLTLISGLFALM FDLQADVALVMMSSLFIGTPVLSLVGSVGAALTLGLRGGSVLTSLLVLPLYIPVLIFGAG AAEAVAVGINSAAYFFIVGALTLFSLVVMPVATSAALRFASD >gi|301349834|gb|ADCQ01000016.1| GENE 58 56943 - 57680 761 245 aa, chain + ## HITS:1 COG:VC2055 KEGG:ns NR:ns ## COG: VC2055 COG0755 # Protein_GI_number: 15642055 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Vibrio cholerae # 10 240 11 242 250 190 46.0 2e-48 MKTNKSILTPEGMYSFAGKALRPCFILAIIVILAAMYVGFFLAPVDATQGNSYRILYIHV ACAWMAMLLYVVMAIFCSLGLITENRLWPMVAASLAPTGCLMAFLALWTGSLWGRPTWGA YWVWDARLTSALILFFFYLGYIALQNAIPDWRRADKACAVIGIVGVINVPIVYFSVQWWN TLHQGASITASGSSIHPVMLWALALMVIGFWLYTFAVTFVRLRSVILERERNQEWAQQLA LKGEL >gi|301349834|gb|ADCQ01000016.1| GENE 59 57680 - 57868 217 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860397|gb|EFL83474.1| ## NR: gi|302860397|gb|EFL83474.1| heme exporter protein CcmD [Burkholderiales bacterium 1_1_47] # 1 62 1 62 62 112 100.0 8e-24 MGQWSGISDFFAMGGYAQYVWGAYGMVFFCFICEVFGLVRRRQKAAKELLMEARAHQAEE DL >gi|301349834|gb|ADCQ01000016.1| GENE 60 57865 - 58311 492 148 aa, chain + ## HITS:1 COG:PA1479 KEGG:ns NR:ns ## COG: PA1479 COG2332 # Protein_GI_number: 15596676 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c-type biogenesis protein CcmE # Organism: Pseudomonas aeruginosa # 1 139 1 140 162 140 51.0 6e-34 MNSTQKKRLGLIAGGLIICGAAAALVFNAFEENLVFFFSPSQVAAHEAPEGRAFRIGGFV QEGSVQRQKDGVTVRFEVTDTAHTVPVTYKGSLPDLFKEGKGVVAQGKLQNGVFVADQVL AKHDENYMPPEAEKAVQDAHKKARAMKE >gi|301349834|gb|ADCQ01000016.1| GENE 61 58320 - 60275 2638 651 aa, chain + ## HITS:1 COG:VC2052 KEGG:ns NR:ns ## COG: VC2052 COG1138 # Protein_GI_number: 15642052 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Vibrio cholerae # 1 643 1 645 651 634 53.0 0 MIAELGHFSLILALIAGLIQGFLPLAGTALGVRSWVNVARPAVFANAVFCTFAFCCLAWC FYTSDFSVMNVANNSNSMLPWFYRLSATWGSHEGSILFWTLLLALWGLAVAVCSRRLPQD VMARVIGVMGLISVGLTLFMLLTSDPFIRLFPAAHEGRDLNPLLQDPGMVFHPPLLYMGY VGMVVPFAFAVAALIGGRLDAAWARWTRPWTSAAWIFLTLGISLGSYWSYYELGWGGWWF WDPVENASFMPWLTATALLHSLAVTEKRGCFKIWTVLLALITFSLSLLGTFLVRSGVLTS VHAFATDPQRGLFILGLLVLVIGGSLLLFAWRAPKVGTGGAFELFSREAMLLVNNVLLVV AMLAVLLGTLYPLFIDALNAGKISVGPPYFDSVFGPIMVPVILLMGIGPLVRWKDAKISD IVKRTAWCFIAAVILGAATPLIKGWSTWLFVGLTLSWWVLFTFIESLRENIRNFKGNFFG KIFKLSRSWWGMMIAHLGVAVSIVGIGMVMTYSLERDVTMTPGHEVNVGSYDFKFEDVKR GIRGPNYIADEGVFKVTENGKEVATLTPQKRKYFSSQMPMTEAAISSSIAGDVYVSMGDQ TVDGAWVVRAYDKPFVTWIWWGTLIMSFGAFIAMLDKRYRTRRRVRSAQAE >gi|301349834|gb|ADCQ01000016.1| GENE 62 60288 - 60824 801 178 aa, chain + ## HITS:1 COG:PM0028 KEGG:ns NR:ns ## COG: PM0028 COG0526 # Protein_GI_number: 15601893 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Pasteurella multocida # 7 178 16 183 188 165 44.0 4e-41 MKMKYVLPLVIFLALAIFLMVGLNRDPREVPSPLIGKPAPEFSLPRLDDPNKVVSKKDML GQVWLLNVWSSWCGSCRQEHPTMVKVGKGGQKIVPIIGLDYKDKDADAMRFLRQGGDPYD FSIKDPTGEVGINFGVYGVPETFVIDKKGVIRYKQIGPITPEAWDKKIHPLINQLKAE >gi|301349834|gb|ADCQ01000016.1| GENE 63 60824 - 61333 606 169 aa, chain + ## HITS:1 COG:BMEI1331 KEGG:ns NR:ns ## COG: BMEI1331 COG3088 # Protein_GI_number: 17987614 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Brucella melitensis # 23 159 17 157 158 112 45.0 4e-25 MKKFLLALFFTAFALTGAHAQPAQQSPAQPDVKPTILDPVANKRVAEISAQLRCLVCQNQ SIADSNAELAMDLKKQVVKQIAEGKTNQQIIDFMVDRYGDFVLYNPPFKMSTLLLWLGPI LFLVLALGGLFYTMAKRKKLKPVELTEEQKRRAEELLRGTEPAKRRDAK >gi|301349834|gb|ADCQ01000016.1| GENE 64 61330 - 62706 1595 458 aa, chain + ## HITS:1 COG:PA1483 KEGG:ns NR:ns ## COG: PA1483 COG4235 # Protein_GI_number: 15596680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Pseudomonas aeruginosa # 27 405 25 356 407 88 24.0 2e-17 MMTFLLSAGAMIIVLLLIICIPLLTFRKKDTGAEELPQANIAIYRDQFKELEDELARGAI SQNEYDESRLELERRVIEESIPEKQVEPTNQKAGVYTVFVLVLVVPFFAVAMWAATQHLG DFRLDGGINEGVVDYNTGTVVRQAGEMHDMDSALKKLRDHLRETPGDIQGWMMLGRTMLT MKNYKEAEAAFTKADQLAPGNPAIMVDLADAIAMVQGQDLSGKPWELVQKALKIDPTNWK ALMMGGTDYFNRGDYRHAVMYWERLLGTLSANDDMRAAVIGSIQEARKLGNIVGPVQDTL DFGNPVNKDDRAVPMMSQMMKNGSAPMGQTPVPAQAMKATHFISGVVELDPKLEEQAAKF DTLYVTARPASGSRAPIAQLKIKVLSFPVHFKLDNTMLPPMDMGGGTLDEHDTVMITARL GYAQQMMPANGDLEGQTSAPVKVGADDVTLKLTNVVAR >gi|301349834|gb|ADCQ01000016.1| GENE 65 62790 - 63575 1022 261 aa, chain - ## HITS:1 COG:RSc1744 KEGG:ns NR:ns ## COG: RSc1744 COG0760 # Protein_GI_number: 17546463 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 27 237 20 228 255 139 37.0 4e-33 MKKIKLLTALALASAAFAVSAQNIATVNGKPIPKSLQDEWLAQLVANGGKDTPEARRQIT ENLVANALVEQEAAKRKISDDPKVKFALDYAKFRILQEALLRDEMAKHPVSEKEIKARYE EEKAALGNKEYEVSHILVKDQKTAENIEKKLAAGGNFAALAKEFSVDTGAKENGGDLGWN RPAVFVKPFADAVKNMKKGEISKAPVKTEFGWHIIKVNDVKEVPFPTYDSVKDQIREGLE LKKQQNFLNELMKTNKIEYGK >gi|301349834|gb|ADCQ01000016.1| GENE 66 63845 - 65494 2208 549 aa, chain + ## HITS:1 COG:HI1069 KEGG:ns NR:ns ## COG: HI1069 COG3303 # Protein_GI_number: 16273000 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Haemophilus influenzae # 58 504 51 448 538 119 25.0 2e-26 MTKMPLFPSVLALALIGYFGVSYAAPAQNDANCTACHSNIGTLHTGSKHANLPCATCHDG TADHLKNPKTHPTVSMSPQQCSSCHPNQFETMYKVNDHRIARDSKKNLNNISPNPFFDEA LGAHGFVKEHNLPRSHAYAAVDQFIADRSFGGRFQPKEGWLFSGDNGGFFGVWEKIDDTI PGNAQKPHKPGTAAAANPVCWTCKSTDVMMDWAYLGDPNTKAKWSRASNPVDLVHNINHA LNCNMCHDPHSAQPRIVRDALIQAMTRTDYPTLYSESANKTPIEVKDMGLRGFTRKIAIL GKPDSKLMCAQCHVEYNCNPGTDPATGKPIKMDDPRTNLFPLVDVTRIEDFYKHASFKDF KHNQTGALLTKMQHPDTEVYWNSKHDQMGVGCAACHMPKVKDANGDVYTSHWATTPRAYI QETCLQCHKDKTEAQMNKVLDSMNAHYNGKLREAEASMGQMFIAFRQANDAGVDPAVIKQ AQDLHSVAHTNWEWWTASNGSWFHNMPQAKESLAKSVAASQKATKLLRDAVAAKVAAQAQ PQAQQTAQK >gi|301349834|gb|ADCQ01000016.1| GENE 67 65565 - 66422 612 285 aa, chain + ## HITS:1 COG:PA1483 KEGG:ns NR:ns ## COG: PA1483 COG4235 # Protein_GI_number: 15596680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Pseudomonas aeruginosa # 30 278 29 271 407 60 24.0 3e-09 MSSDLIFWICAAALLLLLEVCLYIGLRSSSKTEVENTGLNRLVYQDQFQTLNQELAEHRI SKAVYDAELSELEARAVEETATPNVAYRNPSWVKPVSIFLCLLVPLTAVFLYFSWANPSL VTYKGTPEAQAAAQPADRIGQLKTFLKESPRAVRAWLALADEFGREGQYKEAVNAMNEAF HVSPNGVAKTADYRVQRAVFALETSDPMLRSQAVSDLEQAVKLEPSNIRALELGGIVAYQ SGQYSKAVGFWQELLLLTPQDSPAYSRLLDAISDAKNRAQMNFRF >gi|301349834|gb|ADCQ01000016.1| GENE 68 66419 - 68287 1676 622 aa, chain - ## HITS:1 COG:ECs2039 KEGG:ns NR:ns ## COG: ECs2039 COG0826 # Protein_GI_number: 15831293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 4 622 19 636 667 525 46.0 1e-149 MTPSRTLELLAPCRTCDIGIEAFKHGADAIYIGGPLFSARANAGNSMSEIERLASFAHRF NGRVYMALNTIFSDEELPEAVRLAHQAYHAGVDALIVQDMGLLMCDLPPIQLHASTQCDI RTTEKAVFLESIGFSQIVPARELTLGQIQEMAEALKTARIEFFIHGALCVSYSGQCYASQ AFKGRSANRGDCAQICRLPFDLFDEEGKSISRGKHLLSLKDNNQSQNLDALIAAGVRSFK IEGRYKDLTYVKNTTAFYRRELDAWLEKHPDFEAESDGKVEFNFEPSLENAFNRGATDYF VNGRSDHMEAFSTPKNSGAVIGQVVKVNDRSFLVKTKEELHNGDGLTFFTDTDELSGLLI NRAEQKDTGLWEVFTREPCSRITGLKEGLRLMRNKDAAWLKRMNAETALRKIPIRIEASV GPNGIDIRADDGHGHQSEVSLLEPLPEAKNPQAVKEQVLRALGKLGSTDFVADNIQIEGD HPGFMSASVLNGLRRELISRLEEDRSQKREILPQAGDDTSAVFPVKELDYHGNVMNKKAL EFYKLHGTQVTEPAFEKGQHKGETEVMRCRYCIRHALNICPKQGKLRGEKIKPTPLKLRN GKIELTAHFHCKPCEMSLTTKV >gi|301349834|gb|ADCQ01000016.1| GENE 69 68351 - 68998 797 215 aa, chain - ## HITS:1 COG:RSc1788 KEGG:ns NR:ns ## COG: RSc1788 COG0666 # Protein_GI_number: 17546507 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Ralstonia solanacearum # 5 198 12 205 291 88 33.0 9e-18 MMYRKLALLAASCLLSVSAFATTYDDAVDATFKNDADALAPLLAKGLDPNTVTSSGAGEP LLMLAIRKNANSVIDLLLKQKNIKVDQPNTLKETPLMIAIFLKDNDVAKKLIAHGAAVNN PKNWSPLHYAATSGNKEMVKYLISKGADVNARTLRGITPLYMAAREADADTVKLLLHAGA RKDYCTNDELAPYDIAKQRGNSTEVQNLLKYDHCR >gi|301349834|gb|ADCQ01000016.1| GENE 70 68995 - 69771 826 258 aa, chain - ## HITS:1 COG:NMB0771 KEGG:ns NR:ns ## COG: NMB0771 COG0084 # Protein_GI_number: 15676669 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Neisseria meningitidis MC58 # 2 254 3 252 259 234 48.0 1e-61 MLIDSHSHIDGAEFQLDIDEVFARMKEAEVGGALVAGTSLQDYERGLNFANAHKNVWYAA GVHPSTKDDDHEASIGELVGLTKPQKVVAIGECGLDYYYEEAPYDAQLERFARHIEAAKL ANLPVIVHSRDAQEDTIRLLKEHDAGSTGFVLHCFTGDKKMAQDALDLGGYLSFSGIVTF KNATQIQEVASWVPSDRYLVETDCPYLAPIPFRGKRNEPSYVRYVARKVAFLRGETLEKV AEDSTQNFFRLFSKAELL >gi|301349834|gb|ADCQ01000016.1| GENE 71 69773 - 70561 674 262 aa, chain - ## HITS:1 COG:HI0735 KEGG:ns NR:ns ## COG: HI0735 COG2908 # Protein_GI_number: 16272676 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Haemophilus influenzae # 19 237 1 216 237 157 40.0 2e-38 MSFNGVVPAESCLSKIPPLQNPVFIADLHLAADKPATKEAFFKFLKNDAARFSELVILGD LFEFWAGDDHAPAYADILEALKAFFLNGHRIYVMHGNRDFLLGKGFTAATGAQLIADPIP VQVGFDHILLSHGDMWCTLDPEYQQFRATLRSPDVQRQILGEKLEHRIALAGGLRNQSAY DNQEKSKEVMDVVVNDVARSVRQYRTKIIIHGHTHRPAHHTHVNEDSRFDRWVLPDWDFE NGRSRGGYLSFENGYIHFGHLD >gi|301349834|gb|ADCQ01000016.1| GENE 72 70562 - 71053 811 163 aa, chain - ## HITS:1 COG:NMA1002 KEGG:ns NR:ns ## COG: NMA1002 COG0652 # Protein_GI_number: 15793958 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Neisseria meningitidis Z2491 # 1 163 1 169 169 215 67.0 3e-56 MIRLTTNFGTIDIELDYKNAPVTASNFEQYVKDGHYNGLIFHRVIPGFMIQGGGFKPGMD EVDTREPIKNEANNGLSNEKYTIAMARTNDPHSASAQFFINVADNKFLDFKSETMQGWGY AVFGKVVAGQDVVDKIAKVRTGRVGWYDDVPTEDVVIEKAEVI >gi|301349834|gb|ADCQ01000016.1| GENE 73 71071 - 71628 897 185 aa, chain - ## HITS:1 COG:VC2299 KEGG:ns NR:ns ## COG: VC2299 COG0652 # Protein_GI_number: 15642297 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Vibrio cholerae # 11 184 20 193 194 184 52.0 6e-47 MFNVKKLAFGAAMLAASAVCFAAPKVEIVTSEGNIVVNLNEKAAPTTVANFVKYAKEGFY NGTIFHRVINNFMIQGGGFDRNLHQKSTHAPIKLEDKNGLKNTVGTIAMARTNNPDSATS QFFINLKDNDFLNGTSTKDGYAVFGEVVTGMDVVRKIGRAPTGSKGFMDDVPVRPVIIES VKVLK >gi|301349834|gb|ADCQ01000016.1| GENE 74 71683 - 72243 711 186 aa, chain - ## HITS:1 COG:RSc1166 KEGG:ns NR:ns ## COG: RSc1166 COG0457 # Protein_GI_number: 17545885 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Ralstonia solanacearum # 22 186 29 199 219 85 32.0 5e-17 MRLPLIFGCAVLSGLLLSAQVSAQDGVPLFGDKTPDIVNPARSVSQLISRGKYADAMNLA DKELAVNPQNVNLRFLRGVIFMETKKNDEAKRVFEQLIREYPEIADSYNNLAVIYAGEGN LGRAQDLLERALMNNASSVTTYSNLGDIYAAKAADMYAKAARLAPKNGRLKEKAQIAQDL TIRTAP >gi|301349834|gb|ADCQ01000016.1| GENE 75 72440 - 73183 283 247 aa, chain + ## HITS:1 COG:no KEGG:Dacet_2090 NR:ns ## KEGG: Dacet_2090 # Name: not_defined # Def: putative transcriptional regulator, Crp/Fnr family # Organism: D.acetiphilus # Pathway: not_defined # 1 240 1 244 249 76 23.0 8e-13 MRQVFRQLPWIHPQIDPRIQQFFNQYGRYLRLKQGASIFNGGDAGEIALVLCGLGVFSFP DKHLKNHYLSLIPPGSLMGDVDGLTHESVNVYDSAFRDSEVRLIKRDIFRDFLIQNPELL HAHTLSVIAHHESCMEALIANSTLTLPDRLQVLYASLAASFGKSTEKKSFVSIPLTLTAV ELSAFVNASRQSVSSVHTEIESNGDIVRKKGETQLSKKFIDGCFDWLENGAQPSVRIRKR REKPSAS >gi|301349834|gb|ADCQ01000016.1| GENE 76 73290 - 73637 301 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860414|gb|EFL83491.1| ## NR: gi|302860414|gb|EFL83491.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47] # 1 115 1 115 115 187 100.0 2e-46 MNKQLVVLTFAAFGAFMLNASAAGVADLHAAKGQDCAACHMEGKPSSSNVSEASCQKCHG EEPAGKALEIEGKKVANIHKTHFDTFECLQCHKGHSQSVIACAECHKGAQSIQVP >gi|301349834|gb|ADCQ01000016.1| GENE 77 73668 - 75362 2277 564 aa, chain + ## HITS:1 COG:Cgl2581 KEGG:ns NR:ns ## COG: Cgl2581 COG1053 # Protein_GI_number: 19553831 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Corynebacterium glutamicum # 202 546 204 557 563 104 28.0 5e-22 MSKVELSRRGFLKSTLAATGAAMAGTAAHAGDIPEKWQQPKCSGWSWEKPAPKIAPEQIK KTVNTDVVVIGAGLAGFAAALAAAQEGAKVVLVEKTRGWSCRGGHITAFNSSLQKKMGID IDAAEIVRRLVAWGQGRMDERLLWMFARKCGDCMDWAIDIAGKHDTNVTLWEGYYKGPTY TEFPVTHFFYNKNINLDYTYGNSEGIGNVALMPCFEEELKKAGVTLMYRTPAVQFIQDAN KRVTGLIAGRPNNYTQINAAKGVIIATGCYGSNEEMRKAFAPYSLHADAQIYFPTKSNTG DAHIMAMQAGGVMQKNDNHAATVHLEAGAGSYGFLHVNANGERFMNEDVNTQSKSCSKEL QPHGIAWTVYDSNWTQDVKKQVDGNLAGGLFYGQMWQPWGNGWNVEIEKASQAQHIKDGK VVVADTLDELAQKMGVPVEALKATVTRYNELAAKGHDDDFGKRPELLTPIQKGPFYAGRL VSTLLAMSGGLHTDPSLHVLDKNDKPIEGLYVCGAAAGDYFGSGDYPTICPGMNHGRALT FGRLTGVMAAGGDIDKTVKSMEIK >gi|301349834|gb|ADCQ01000016.1| GENE 78 75506 - 75712 187 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860416|gb|EFL83493.1| ## NR: gi|302860416|gb|EFL83493.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 68 1 68 68 106 100.0 3e-22 MKRFTIVLALLSLPFIAGCMHHGHYYNDHRPYASDGYYGPHRYDNSTYPQYPCAEPQQRM PHRGYHRH >gi|301349834|gb|ADCQ01000016.1| GENE 79 75944 - 77338 1478 464 aa, chain + ## HITS:1 COG:RSc1167 KEGG:ns NR:ns ## COG: RSc1167 COG0215 # Protein_GI_number: 17545886 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Ralstonia solanacearum # 2 464 3 465 465 530 58.0 1e-150 MALKIYNTLSRSVEPFKSITPEKVGMYVCGVTVYDDCHIGHGRTFIAFDVARRWLQESGY DVKFVRNVTDVDDKIIKRAAERKILPSELAETYTKRMQEDLGELGCLPPSVEPRATQYIP KMLALIEKLEEKGYAYQDKNGDVDFSVRKFKPYGALSGKKVDELQPGERVRVEEAKQDPL DFALWKRAKPGEPEWDSKWGKGRPGWHIECSAMSCDLLGETFDIHGGGPDLMFPHHENEI AQSEAANGKKFVNTWMHSGPLRVNGEKMSKSLGNFWTIRDALKETNTQYGDKNGNETLRF FLLRSHYRSPIDFSSALVEDAHQALIRLYTALKNTPADDNPLDWNEKYAAQFKEAMDDDF NTAQAVAVLFELAKEVNQTKSPELARQLKKLGGVLGILQLAPEAFVKGAVDSVDEAAVEA LIAERKAAKAAKNWARADEIRKELLEKNIVLEDAPGGVTTWRRA >gi|301349834|gb|ADCQ01000016.1| GENE 80 77344 - 77997 385 217 aa, chain + ## HITS:1 COG:RSc1168 KEGG:ns NR:ns ## COG: RSc1168 COG0122 # Protein_GI_number: 17545887 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Ralstonia solanacearum # 8 213 90 288 291 164 41.0 2e-40 MAEQTEKPEWWDQAKKELSEADPVMAQIIRANPEGFLATRGNPFETLLRSVIGQQISVKA AANIWERFAKACKEIKPEIITRKHRRTLRTAGLSERKIEYVFDICRFFLENPDAADGFQH RSNEEIIKELCTIKGVGPWTAEMFLIFALRRPDVAPMLDYGFIKAVGQAYFPEIAFEEWS AADRKEEMSSVIAKWGPWKTAGTWYLWRSLNNGPMQY >gi|301349834|gb|ADCQ01000016.1| GENE 81 78007 - 78978 1054 323 aa, chain + ## HITS:1 COG:RSc1169 KEGG:ns NR:ns ## COG: RSc1169 COG0825 # Protein_GI_number: 17545888 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Ralstonia solanacearum # 3 320 2 318 322 433 67.0 1e-121 MAKVTYLEFEKPVAQLEEKIQELRDMSSGSEGLDLTSDINGLEKKKAKLLKEIFNKLSPW EMSLLARHPNRPYTLDYINMIFTDFHELHGDRAYADDPSIVGGMARFNGEPVMVIGHQKG RDTRERTLRNFGMSRPEGYRKALRLMQTAEKFSMPIFTFVDTPGAYPGIGAEERGQSEAI GHNLFVMSRLKTPIVATVIGEGGSGGALAIAVADVVQMLQYSTYSVISPEGCASILWKSA AKAPDAAKALGLTAHQLFDAGLIDKILPEPLGGAHRDPEAMAQTLKRSLSDSLRTLKRMS TEELLEERYKKLLNYGKYAEVEK >gi|301349834|gb|ADCQ01000016.1| GENE 82 78959 - 80395 830 478 aa, chain + ## HITS:1 COG:STM0236 KEGG:ns NR:ns ## COG: STM0236 COG0037 # Protein_GI_number: 16763626 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Salmonella typhimurium LT2 # 50 450 16 410 430 206 36.0 1e-52 MPKSKNNPSEKKTVRGITTRVRTALENTARQLQLSADGLPIASGEKPINVIVAFSGGLDS SVLLYAVSQLKGKSYGEITAVHVHHGLSKHANEWAEFCEERAKKCGVRFVLRKVTVPSGG AGFEAEARQLRYEVLEEEARKSAADAILTAHHLDDQLETFLIQWMRGSGPAGLAAMPPLL RKDGCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDMKYLRNAIRHNIIPELEKIRPG FKTAAARSIELIAEAAETLRDVAEDDINQASENDGKYLRIDDFLALPAGRRARVLRLWLD RVGFKPLPRTRLLEMIRQIKETTKQSVCLMFSDGLEIRKYGSRLMVTEHEKPESEAEIIV EWHGEPEIDLPQYNGKLVFTPAEEGFNEGYLKAQPLSIRRRSGGEKIKIHKFRPRKSLKM LFQEAGIPEFERKNLPLVWRGKTLIYVGGVGSEVREQVDDDGTPRYKIEFIKNPSLFS >gi|301349834|gb|ADCQ01000016.1| GENE 83 80430 - 81230 274 266 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 228 1 218 245 110 32 4e-23 MLKITHLHKTFFPNTPNEKKALRGVNLTLEEGDFVTVIGSNGSGKSTLMNCIAGVFYPDK GHILIDGVDVTRMPEHVRAKYIGRVFQDPMKGTAADMQVAENLAMASRRGKPLSLKWSSQ SSQLAEFREALKELDLGLENRLETRIGTLSGGQRQSITLLMATLVPPKLLLLDEHTAALD PKTAEKVLNLTQKRVSEGNLTTLMITHNMRDALRFGNRLIMMHEGRVVVDVKGEQKKELT IQSLLELFEKASGAEFDDPEALLTVD >gi|301349834|gb|ADCQ01000016.1| GENE 84 81223 - 82119 1366 298 aa, chain - ## HITS:1 COG:SP1070 KEGG:ns NR:ns ## COG: SP1070 COG4120 # Protein_GI_number: 15900939 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Streptococcus pneumoniae TIGR4 # 4 284 1 277 288 204 45.0 1e-52 MLDLVLSTVSQGLLWAIMALGVFLTFRVLDIADLSVEGTFPLGAAVAATLIDAGHSVWFA MLIALIAGCIGGTVTALLTTKLKIPALLSGILTMIGLYSVNLMIMGKANVPLLRAETVFT LTEDLFGVSSVVATLIVGLIATTVVGVIMYWFFGTVLGTAIRATGCNPQMARAQGINTNV MVILGLLISNGLVALSGALVAQSNGFADVGMGTGTIVIGLASVIIGEVLFGTRSFKNWLI SVVLGSVVYRAVIAIVLELGMPPNDLKLFTAVLVAIALSLPLIKNKFAIMKRSEEADA >gi|301349834|gb|ADCQ01000016.1| GENE 85 82135 - 83133 1265 332 aa, chain - ## HITS:1 COG:VC1101 KEGG:ns NR:ns ## COG: VC1101 COG2984 # Protein_GI_number: 15641114 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Vibrio cholerae # 31 326 19 313 321 214 43.0 3e-55 MKISRLCLLAASLAAVLTVTGCDDKKTATPAAQASAAKTYNIGVVQLVEHQALDAANKGF VDGLASKGFVEGKNVKFDFQNAQADQSNLRNIATRFTGNKVDLIGAIATPAAQTMANATN KIPIVATAVTDFEIAKLVKSNDKPGTNVTGSSDMAPISSLLELIVKIYPNAKNVGVMYSS SEINSERQVQIFKEEAKKHNLNVREATVSNVNDIQQAAQSLVGKVDLIYTPTDNTIASAV PALIKITEKAKLPVFAGEGGEVKGGATAAIAIDYYELGKIAGTMAADILEGKAKPETMPI QYQKNFKTVFNETAVKNLGLTIPADVKHELVK >gi|301349834|gb|ADCQ01000016.1| GENE 86 83274 - 84017 588 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 9 246 1 242 245 231 49 2e-59 MEEKDSKTMISVKHLSKKFGDVTVLKDINLDIKEKEVVVIIGPSGSGKSTILRCLNHLET PSGGEIVIDGIKLEEGANLNAIRREVGMVFQRFNLFPNMTVLQNIMLAPMQVRGKSKEEA KEKAMRLLKRVGLEHKADAMPDELSGGQQQRVAIARALAMNPKALLFDEPTSALDPEMVK EVLDVMKSLAKEGMTMVVVTHEMGFAKEVGDRVMFVDGGLIVEEATPEEFFSHPKNKRTQ DFLSKIL >gi|301349834|gb|ADCQ01000016.1| GENE 87 84020 - 84691 802 223 aa, chain - ## HITS:1 COG:TM0592 KEGG:ns NR:ns ## COG: TM0592 COG0765 # Protein_GI_number: 15643358 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Thermotoga maritima # 7 217 5 214 216 214 58.0 8e-56 MALELNLSIITENLPLLLKGAGITLEITALSVGLGLLIGMFVGVAKLSDNRLIRGLASVY VDCIRGTPLLVQIFLVYFALPQIIGHRIDPFVAAVGACSINSGAYVAEIFRAGIQSIDKG QMEASRALGLNWFQAMRFVIMPQAFKRIIPPLGNEFIAMLKDSSLVSVIGFEELTRTGQL IISRTYAAFEIWIVVALLYLIMTLAISRFVALLEKRFSKGTRK >gi|301349834|gb|ADCQ01000016.1| GENE 88 84776 - 85546 1126 256 aa, chain - ## HITS:1 COG:ECs0889 KEGG:ns NR:ns ## COG: ECs0889 COG0834 # Protein_GI_number: 15830143 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 29 255 17 244 248 181 43.0 1e-45 MLKRSFLAIPLVAVLSMSLLTACGDKKEAAAPAKAEKVLRVGTNPTFAPFEFQAKGSNDL TGFDIDLAKALGKQMGYKVELVNLGFDGLIPALSTGNIDLAVSGMSITEERKNAVDFCDP YYTSGLIVLVRPDETNIKGINDLVGKRIGAQIGTTGATKASSVKGADVKQYNNANEPFIE LDNKGVDAVINDQPVVAYYLVNGGKGKMVGDIMEAEYYGIAAKKGNKALVKQVNEALAAL KKNGEYDKIYKKWFGA >gi|301349834|gb|ADCQ01000016.1| GENE 89 85648 - 86601 573 317 aa, chain + ## HITS:1 COG:STM4400 KEGG:ns NR:ns ## COG: STM4400 COG0697 # Protein_GI_number: 16767646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 304 1 307 321 172 32.0 6e-43 MFLGVLYGILGCSLWGFIYIIPLLLPEYSPATVAMGRFTVYSIGSLVICYYCRKTLALLT TSDWIKAFCLGFFGNAVYYVLLTKGVRLAGVPTSGMLMALIPLNVALLTNRPGAETTVVV PWRRLSLPLAMILIGLWIGNIDEFSEISVATSSVEYWLGFLCSFGAMALWTWFPIRNSQW LLKHPNVSPLAWTTAQGASMPPATLLCYVAVNFETFLHGGAVLGQTPVKFVLLMVAAGLI CGWAGMALWNMMSARLPVALSGQMIVFETIFSVIYSLIYKQQAPKWTLVVGVFLLLGGVL LSLKVFRDSGRKVSQPN >gi|301349834|gb|ADCQ01000016.1| GENE 90 86598 - 87137 797 179 aa, chain - ## HITS:1 COG:CAC2575 KEGG:ns NR:ns ## COG: CAC2575 COG1592 # Protein_GI_number: 15895835 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Clostridium acetobutylicum # 3 179 2 195 195 181 51.0 5e-46 MSKPLAGTKTEKNLWTAFAGESQARNKYDYFAGVARKEGFQQIAAIFEETASNEKAHAKI WFKELQGIGNTAENLKAAASGEHYEWTDMYDQFAKDAEEEGFPELAAKFRGVGAIEKHHE ERYLKLLNNVEMQKVFEKSEIVMWQCRECGNLVIGPRAPEICPVCSHPQAYFQLQETNF >gi|301349834|gb|ADCQ01000016.1| GENE 91 87286 - 87585 161 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860429|gb|EFL83506.1| ## NR: gi|302860429|gb|EFL83506.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 99 1 99 99 209 100.0 3e-53 MKRIITTLGLFVLTSVVAGCSWTDRQIGPNDYEISGYFDFTMKGEVVAKGLEDQACLYCK GIQENLVPQVYYITDKNRIFNYEAQRASAVIRFHCIPNN >gi|301349834|gb|ADCQ01000016.1| GENE 92 87866 - 88402 294 178 aa, chain + ## HITS:1 COG:NMA0004 KEGG:ns NR:ns ## COG: NMA0004 COG2184 # Protein_GI_number: 15793038 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Neisseria meningitidis Z2491 # 1 176 11 186 191 263 72.0 1e-70 MKDLDRQGLAKAKALFETGDVNSIEVGSFKGLLQIHKYLFNGLYDFSGEVRQQNISKGTF RFVNALYLVEALIKIEKMPEKTFEEIISKYVEMNVAHPFMEGKGRSTRIWLDQILKKNLG VVVDWQKVDKTAYLQAMERSPVNDLELRFLLQPALTSDVNNREMIFKGIEQSYFYEEP >gi|301349834|gb|ADCQ01000016.1| GENE 93 88528 - 89364 475 278 aa, chain - ## HITS:1 COG:PM1111 KEGG:ns NR:ns ## COG: PM1111 COG0157 # Protein_GI_number: 15602976 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinate-nucleotide pyrophosphorylase # Organism: Pasteurella multocida # 1 275 1 278 282 181 36.0 1e-45 MFYIPTSFLENILKEDIPWNDSTTEALGISGVPGKISCFPKKDGFVSGIEIGVRLFKEVG LEVTCIGKDGDFYSAGQTVLEARGTAEKIHSVYKTVQNILEYSSGITNRVRAMTRQIEAA GSKAKVAVTRKHFPGTKTISLNAALLGGAIVHRAGLSESILVFDQHRVFCKDPVAAISVA KKHEPEKKIAVEVDNEEEGFKYIHAGADIIQCERFSPAALKAFVAKARNIRNDVIINAAG GINDTNASEYALTGSNVLVTSWVYFGRPFDIKMKISSD >gi|301349834|gb|ADCQ01000016.1| GENE 94 89368 - 90036 446 222 aa, chain - ## HITS:1 COG:MA3902 KEGG:ns NR:ns ## COG: MA3902 COG4149 # Protein_GI_number: 20092698 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Methanosarcina acetivorans str.C2A # 9 213 11 215 222 123 36.0 2e-28 MNSETVFFPLLLTTKTCAVSLFLFLFLAVPLSYWLAGRKSIFAKAVELLITLPLVFPPIA LGYMLLVVLGRNGLVGILLENLGLRMVFSQTGVILAAFIAGLPLVVKPLQAAFDCQEAKE LEEAARVCGLNKLKTFFFISIPLCSKTLLAGLLLGLARASGEVGITMMLGGNISGRTNTL SLEIFNSVSRGDFDCAAFLCTILAVFAGLIYAALYFLQPKRI >gi|301349834|gb|ADCQ01000016.1| GENE 95 90040 - 90765 838 241 aa, chain - ## HITS:1 COG:CC0328 KEGG:ns NR:ns ## COG: CC0328 COG0725 # Protein_GI_number: 16124583 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Caulobacter vibrioides # 20 241 27 250 252 69 28.0 6e-12 MKIHTVALVAALCFSSQAFAEVSLTTGAGYANMAKELAKAFSATSGNKVTENFGGNIGQM MAQIANGNGANVVISDEGTLKSLKTPVQLTDIHSLGNTPLVFIWKKGLNLKGVSDLGTDK VKQFAYPDPKAAIYGRAAQQYLDNLGPNTVTKDKVMKIASVPQVTAYVVKGEVDAGFVNR TATRANKEKIGGSEELTKGYAPIHMIAAVVKGHEGDKNVQQFLAFLQSEQAKKILMKHGI Q >gi|301349834|gb|ADCQ01000016.1| GENE 96 90765 - 91451 217 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 26 207 34 217 223 88 30 2e-16 MISFDFTVRIEDRKFRFSADLLSERIAILGRSGAGKSTLAKALAGLLKPESGYIKFGKRI LFDSSTGVDLPPQKRGIGFVFQNHRLFPFMSVRKNLLFGRHFANRKNALSFDEVVLFLEL EPLLNKSPSKLSGGESQRVALGRALLCAENFMILDEPLSSLDPVLSNSLQGYLERIHSFA GLPFLYITHRSNEALRLTEEALLVAEGKNVLLGKTNEVLNQSQFLRSE >gi|301349834|gb|ADCQ01000016.1| GENE 97 91591 - 92382 244 263 aa, chain - ## HITS:1 COG:CAC3443_1 KEGG:ns NR:ns ## COG: CAC3443_1 COG0789 # Protein_GI_number: 15896684 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 2 110 7 115 118 65 33.0 9e-11 MLKTAEFAKMCHTTKDTLIFYDRIDVFKPAFVDSKKYRYYEVRQAVQFAFLSHLRDIGFS LEEIKEFIKRPNEEKFIKRLEERSEAFREEIEKAKRFLRYTDGILELSKEASRHVEGVIS VERKKERTFQYTPFLKPCSFNTMREYTDFLFESRQDETTSVPWGYVADFKRNADNRLVFL GSLDFPLKRKGVQLLKLPAGHYASWFFRGDMNEHQKLFRKKVSELEKNYVLTDKAFLFDQ SSVLLLGNGEVFTTKYEILLIED >gi|301349834|gb|ADCQ01000016.1| GENE 98 92397 - 93599 948 400 aa, chain + ## HITS:1 COG:PA3532 KEGG:ns NR:ns ## COG: PA3532 COG0477 # Protein_GI_number: 15598728 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 23 374 5 355 383 132 31.0 2e-30 MELHHTLTFPSVIINYLKSYMFHPLLSKLTCCIFFLLPGLMYGLLMARLPAVKAAAELSD SLIGLCLFCTGAFGLVGLGGSPALIRKVGSRMVLCVTAVIAAAGLCLIGFSTALPIVLLG FGAMGIGISMLDVAMNTQGVLYEHYSKSQSMNLFHAFYSLGAVLASLIGSVCATVGLTAG LNFFWASVPFVLLSLLLNKYLLPERRVDEEKTAKTRHKIPLVVLVCAVMALLAYAAEGSV GEWGALYLTTVKEASLGVGALVYGIFSGVTFVARLVGDPLRKEFGEIPVIIFGSVISFIG MVGVLSFSSVALVLVSYSVMGLGLAPIVPTLFSMAGKNGKIPAAAATSTVAFMAYGGLLV VPPSIGWMAQHTNLHEALFIVLGLIALMFSLALLLRKLHK >gi|301349834|gb|ADCQ01000016.1| GENE 99 93680 - 95437 2206 585 aa, chain - ## HITS:1 COG:CAP0106 KEGG:ns NR:ns ## COG: CAP0106 COG1154 # Protein_GI_number: 15004809 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Clostridium acetobutylicum # 1 585 1 586 586 610 52.0 1e-174 MKLIDIHSPQDIKPLTIDDLKDLAKQMRAAIINYTSTIGGHVGPNLGDVEALIGVHYVFD APKDKIVIDVSHQDFVHKMLTGRAQYYLDKSKFTEIGEFTDPNESPEYDIFYAGHTSPSI SLAFGLAKARSLKKEDFNIVAFIGDGSLSGGVAFEGLNNAGKLNDNFIVIVNDNQMAIAE NHGSLYDNLRELRETNGQSEHNYFKSLGYDYIYVAEGNDLESVINALKKAKDTKNPIVVH LNTQKGEGYAPAEAHREEFHFSAPYDVADGEPLQQSNESNYITDTRDYLLRKVKENPELL IISSATPEVFGFMEKERKACGNQYVDVAIAEQTGVSTVAGAARGGAKVIYPVMATFLQRA YDQLEQDWAMDNSPAVMPVMGTGIRALTDLTHLGFWDIPMITSIPEIVYLAPTNVEEYFA MMDWALNQNEHKVAIRVPTYSYEHSKGEVDTDYSDLNKFKVVKEGKDVAVIAAGDFFVKG ESVVDALAEKGINATLINPRFVSGVDTELLNPLRQNHKVVVVLEDGSKEGGFGGRIAQAV GATGMKCLTYGLEKKFVDRYNPEELEKAYRLTVPQIVEDTLNALK >gi|301349834|gb|ADCQ01000016.1| GENE 100 95718 - 98330 1178 870 aa, chain - ## HITS:1 COG:YPO3028 KEGG:ns NR:ns ## COG: YPO3028 COG3468 # Protein_GI_number: 16123205 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Yersinia pestis # 411 870 338 759 759 117 24.0 7e-26 MLTAAGQFDALHQGIAQNTDTLIGNWQQFFPGLEGQINAAFEEGRKTGNFIFHSNAAPVA WNVSENGTIAVNSINAGYFRSLRNPANHQFLFPGLSVESQNVNISAGRDLIVTPVPVAEK GFGYALSVGPDQTANLGAGDRIILMTPRNPDNSSYYDDLSVALSENASATMQARQVILFG GISATYSRLLKMSASSGIYFLSPNERSAGTISTIQLLSCEMDLDAPDILIDRKVQIGQII LGTDHPSSLNIGRDPQSGVLTKNVFFTKEVDVEANSSLNLTSAQTAVFQGHLNLIRDAQA DIRSRQIEIEKLFLGNLGSHARFRVDSDGHMVVHEPVSVGSTSGLTIDLGERSTLSAAVD THEGGGSRVTMHRDSYWFVPEDSNLSLVNVEPSSYIQLGQQGHPSQMETETLKGNGAVFY LTAGSTGSLNISKSSEGKHAFLLGSSGVSLANTGYLYHIAVNDDSPNSLDKATFSLANDG IIDAGPYMYKLGLYPFKKGDSRVWAILGTQSLKPVLPDNPETPTDPSEPPDEVIPKPDLP ELPFDPTNPPELDDSAEKPIGLSPAAKLTLASAASGNQIIQFLGSLDDLRSRMGEVREGA EDGSYILYRYDKSRFESHYSANSTFKYSAFTIGADRKFSSGWVLGANLLLTRGNIHVDDA PGNHSRVESVGAKFYAAWLGDKGQYIDSVLSVNRYHNKLSAKNIDESISTADYHNYGLGL SVEIGHRLEFTQTSKLGSWFIDPQVQLSYFRANGASFHFSNDMKVRVKSTDSLNGRLGID LGKNFRSKEGKLSGQVYLRGGVRHDFLGRTSIQMNEFSFKDRSIGTRVYYGIGAESLLKD RLKAFAQINRESGRHLKTDFQIKVGLKYLF >gi|301349834|gb|ADCQ01000016.1| GENE 101 98995 - 100407 1574 470 aa, chain - ## HITS:1 COG:CAC1590 KEGG:ns NR:ns ## COG: CAC1590 COG0471 # Protein_GI_number: 15894868 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Clostridium acetobutylicum # 10 470 16 476 476 367 42.0 1e-101 MSNKPIKLWQYLVPIVVLLAIWFYPVPEGLKPQAWHMFAIFVATIVGILCAPLPSGALMF IALALSIFTNTLSFKAALSGFASGTVWMIFSAYVLSLGFVQSGLGRRIAYKTLSLFGGSS LGIAYSLGIADLILAPAMPSVTARSGGIILPISKSIDQVLDSEPGPKQKRLGEFLTMTCF QFTPITGAMFMTGMAANPLCATLAKEGLGIELTWVGWFWAAVVPAMICFFVMPLLSYKIL NPELKRTPEAKKMGREELKHMGPMSSQEIKVAIGFVLALLGWGTTMWTGLNANAIGIGLA ALLFAMGAVNWKDVLADKAAWDTVVWFGVIISLATGLTSLGFIKWMSAGFASMLTGMDWM TTFILLGFAYIYLHYVFATASGHVAAMYVPFAAVAIGAGAPPLMVAVCFAIFSNFMWGIT EYAGGPGPIYFGQGFFERPRFYKINFVLVTASVIIVFAVGMLWWKIIGLY >gi|301349834|gb|ADCQ01000016.1| GENE 102 100482 - 101831 1557 449 aa, chain - ## HITS:1 COG:PA3517 KEGG:ns NR:ns ## COG: PA3517 COG0015 # Protein_GI_number: 15598713 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Pseudomonas aeruginosa # 1 445 1 447 477 323 40.0 4e-88 MPSTAIDSQIHGCMFSTDEMREILSDKAWVQKWLDTEAALAAAQAELGVIPKEKADIINQ YAKAELIDIPSIGEYYKSSITIVPLLKAFKAILPENAGEFVHWGATSQDIVDTGIVLLER DAYEVILRDMKLCQEYCLDLAKKYRNTIMSGRTHVVHALPITFGYKAAIWADELGRDIER LEEMRDRVFVGEMAGAVGTLASQPEHGLETQERMFKILGLKTPTIAWHVARDNQAEFVSV LALCAGTLGRIMHEILTLQRTEILELEEPFFMGKVGSSTMPHKRNPAVLENVLALLRNVR SIAPSIVESMISEMERDWGCFLSEWEAIPRACHMMAAALEKSKNILKNLIVYPKHMERNL FAQKGLMLSENVMMHLANRLGRMTAHGIVYKGAMEAYEKEIPFKDVLLRTPEVAAAFTEE EIDAMLDPHNYVGLAPEFVDRVVAKYSKN >gi|301349834|gb|ADCQ01000016.1| GENE 103 102105 - 102836 518 243 aa, chain + ## HITS:1 COG:SPy1202 KEGG:ns NR:ns ## COG: SPy1202 COG2188 # Protein_GI_number: 15675167 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Streptococcus pyogenes M1 GAS # 4 234 12 236 241 79 31.0 5e-15 MQKPVWKKIAEEISLEVSLGRWTVGSIIPNEIDLAKRYKVSRDTMRKALTYLTQQGLFER KPHIGTRVKSRTRTGKFLSELDGIRDIDHYGNQYPRKIQNVTQLVVDEELAERLSLKPGD LVIRFKNIRVASEKVQETVVVTYVYIPAEAAEVLEIVKKRPEELIITLAEEVLGRECDEV KQTFSGTIMPDEVADLFKVPHGTAALKIIRNYMDVRGRTIVASESFHTADRFSFSVAVKK KKY >gi|301349834|gb|ADCQ01000016.1| GENE 104 102955 - 103917 358 320 aa, chain + ## HITS:1 COG:PAE1263 KEGG:ns NR:ns ## COG: PAE1263 COG0437 # Protein_GI_number: 18312508 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Pyrobaculum aerophilum # 3 216 4 168 214 88 32.0 2e-17 MHKTTKRGFLKAALASGLALEAFPARSASQKSSEQLITIIDLDKCDGCSDLSIPACVRAC RAKNQARYPEPQKPVQPYWPQPKYEDFSNDRDNISRLTPYNWIYLQHVSVDGKDIYLPRR CMQCFDAPCRKLCPFGAIDQTKQGAVKIDDRVCFGGAKCRDVCPWNIPQRQAGVGIYLKV EPKLAGGGVMYKCDFCADLIAQGKEPACSTECPKKAMLVLPISQAEEKCKSLANDRFVYG KEENGGTATWYVCSVPFEKINRQLHSQLPKNHPGRPLMNEVDSKLSQSTPLVLGTLAAPI VALGASVALRKRKNDKDQSQ >gi|301349834|gb|ADCQ01000016.1| GENE 105 103966 - 104559 359 197 aa, chain + ## HITS:1 COG:no KEGG:HH1479 NR:ns ## KEGG: HH1479 # Name: not_defined # Def: hypothetical protein # Organism: H.hepaticus # Pathway: not_defined # 1 194 16 211 224 213 54.0 4e-54 MHWGIALSCFGLIFSGILQMPVAKRYGLTSLGEWMGNYFTTLSMHYFFGLIFVFFCCFHV FYHALNKEFDIVPKKGDVKGSILIFKAILSGRKEPPSAKYLPEQRLAWAAFAVTFLILII TGLLKTYKNLPGVQLDDPWTFYIAQFHNLGFVLCIFLFLGHMAAFMIKANRSLLPAMFSG KVDRSYALERHSLWSAE >gi|301349834|gb|ADCQ01000016.1| GENE 106 104624 - 106399 581 591 aa, chain + ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 14 585 10 564 571 115 23.0 2e-25 MLLLRVKKTFRKLVFPLILTLAVWPVYATETLRLGVSSFAEHNINKGLIDPTIEAIRKAV QPDKLEVECLELGRLQNSLKNGQLDLVLSSAGNYRRFLLEGYGLRDLATMVSNQAPNPNY AEGSVFFVRSDRNDLDSIGALKNKSVSANYPFAFSGWQIAAGELLNRDFDPDHFFSKVDF LGHGASPVIEAVLSGKTDAGIVRACVLENAGLLKSGLVKVLDPKETTDFPCAVSTRLYPN WTLSTTPNTAPEVSRKVTAAVLEIKPLQNNLHWSVATDFTPIDDLFKGLEIGPFEYLRHF SFKRFMEAYWQYLVFAAIFIIGLILHGIRSEYLVNRRTHALTESLKRERKLRAESALVKS RLDKIQKVGLVGQMCSMIAHELKQPLGAAAAYCFALRRRMESGEVSAEMMEKGIERVDHQ IQRASEVVNQVRSYAKGQRQRLTIDVGKTAEKILLDISASAPDTDLEFRKDSEEFFVEAN PIELEIILINLVKNAIEVVKDKSNGRVVVTLSAEGNTVCIKVEDNGEKLSDAEWKQISQL AMATTKHSGLGFGLSIVAGLAEDLGGRITFERIPSGGLSVFVRLPLAKEKS >gi|301349834|gb|ADCQ01000016.1| GENE 107 106396 - 107019 236 207 aa, chain + ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 9 197 17 205 210 147 46.0 1e-35 MIQGCLIRIVDDDEDMRESLSFLLESEGWQSAAYASAREFLIEDAGSVPGCLILDIRMPE MTGLELQQEMNRRKIFLPIVFLTGHGSIDMAVSAMKSGAVEFLQKPVDHARLLGIVRDCV RRCSNGFAVLDFDIIEAKRRWETLTEKEQQVLTLIAAGLLNKEVAERLGNSVRTIENHRA AAMKRLQIKTLAQLHSLIEAVKESTNQ >gi|301349834|gb|ADCQ01000016.1| GENE 108 107147 - 108736 1988 529 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 22 519 43 496 506 144 28.0 3e-34 MQVTKRTFLKGLLATAAAGGVVSQASAKPQADLPAKWDREADVVILGYGGAGASAAITAK DAGADVVIFEKTAQGGGNTAVSSGGMMIPNNRERAITYLAKTYDFANSQKDQELLEAFVD EAMKSKDFLLSLAPDQKVYIYGHAGFQNIPESDAIDKWRFRTPKGQKARGGDMLFNNYRY AVETVRKVPVVYNARGLQLITQNDEVLGVWVEIDGKKQAVKARRGVVLATGGYEFDDNML SNHTMGQKFHRLGHPGNTGDGVRMAQAAGADLWHMNALSCPLGLVVPGLKTALQINMLAP SYIYVDQDGKRFANEKMDNHTCIYGVNVLDPIKHRYPRIPCFVIFDEAARVRGPIIGGAT SGYALNRENYKWSKDNSAEIEKGVIVSAPTIEELAKKINVPAENLVETVNRWNSQINAGA DKDFGRPLEKKGKVAFEGREAPVISRPIGDGPYYAAELYPTILNTQGGPRRNKLGQVLDP FGKPIARLYSAGELGSMWGHIYQGATNNSEACVFGRIAGRTVANETPWS >gi|301349834|gb|ADCQ01000016.1| GENE 109 108798 - 108954 82 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858708|gb|EFL81818.1| ## NR: gi|302858708|gb|EFL81818.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47] # 16 52 16 52 110 80 100.0 4e-14 MKKLLLVVSLALVSVQGAWAADKMLADRHVERGLKCESCHTTMPPKAVNTDG Prediction of potential genes in microbial genomes Time: Fri May 13 05:49:04 2011 Seq name: gi|301349833|gb|ADCQ01000017.1| Burkholderiales bacterium 1_1_47 cont1.17, whole genome shotgun sequence Length of sequence - 102689 bp Number of predicted genes - 95, with homology - 93 Number of transcription units - 47, operones - 25 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 194 122 ## Sputcn32_0810 flavocytochrome c + Term 241 - 292 14.2 - Term 229 - 278 17.0 2 2 Tu 1 . - CDS 314 - 454 251 ## - Prom 553 - 612 3.1 + Prom 452 - 511 1.8 3 3 Op 1 . + CDS 578 - 1249 182 ## PROTEIN SUPPORTED gi|154175150|ref|YP_001408716.1| 30S ribosomal protein S15 4 3 Op 2 . + CDS 1262 - 1732 562 ## gi|302860448|gb|EFL83525.1| conserved hypothetical protein + Prom 1738 - 1797 2.9 5 3 Op 3 . + CDS 1855 - 3123 1667 ## COG0527 Aspartokinases + Term 3143 - 3204 11.4 - Term 3141 - 3181 1.1 6 4 Op 1 . - CDS 3203 - 3787 674 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 7 4 Op 2 . - CDS 3867 - 4799 684 ## COG1893 Ketopantoate reductase 8 4 Op 3 . - CDS 4846 - 5421 846 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family - Prom 5442 - 5501 5.8 + Prom 5533 - 5592 2.5 9 5 Op 1 8/0.105 + CDS 5780 - 6757 1460 ## COG2358 TRAP-type uncharacterized transport system, periplasmic component 10 5 Op 2 . + CDS 6844 - 9033 2871 ## COG4666 TRAP-type uncharacterized transport system, fused permease components + Term 9074 - 9111 1.1 11 6 Tu 1 . - CDS 9162 - 10109 751 ## COG0491 Zn-dependent hydrolases, including glyoxylases - Prom 10162 - 10221 9.6 + Prom 10121 - 10180 8.9 12 7 Tu 1 . + CDS 10210 - 11091 243 ## COG0583 Transcriptional regulator + Term 11123 - 11160 4.0 - Term 11109 - 11148 8.2 13 8 Tu 1 . - CDS 11176 - 12318 1525 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 12380 - 12439 4.3 - Term 12436 - 12478 5.5 14 9 Op 1 . - CDS 12498 - 12779 504 ## COG2924 Fe-S cluster protector protein 15 9 Op 2 . - CDS 12846 - 14186 1085 ## COG0548 Acetylglutamate kinase - Prom 14220 - 14279 4.1 + Prom 14185 - 14244 4.2 16 10 Op 1 . + CDS 14432 - 18577 3908 ## COG1643 HrpA-like helicases + Prom 18586 - 18645 2.8 17 10 Op 2 . + CDS 18709 - 19875 1069 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 19904 - 19946 11.2 + Prom 19937 - 19996 3.3 18 11 Tu 1 . + CDS 20017 - 20799 879 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Prom 20834 - 20893 3.5 19 12 Tu 1 . + CDS 21030 - 22097 742 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Term 22160 - 22210 0.5 + Prom 22337 - 22396 5.8 20 13 Op 1 32/0.000 + CDS 22421 - 22981 626 ## COG0779 Uncharacterized protein conserved in bacteria 21 13 Op 2 20/0.000 + CDS 22981 - 24480 848 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 22 13 Op 3 32/0.000 + CDS 24504 - 27230 3497 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) + Term 27250 - 27285 5.1 23 13 Op 4 26/0.000 + CDS 27305 - 27679 557 ## COG0858 Ribosome-binding factor A 24 13 Op 5 1/0.316 + CDS 27680 - 28609 430 ## COG0130 Pseudouridine synthase 25 13 Op 6 . + CDS 28618 - 30468 2359 ## COG1217 Predicted membrane GTPase involved in stress response 26 13 Op 7 . + CDS 30428 - 30835 167 ## PROTEIN SUPPORTED gi|90021194|ref|YP_527021.1| ribosomal protein L20 27 13 Op 8 . + CDS 30832 - 31863 781 ## COG0042 tRNA-dihydrouridine synthase + Term 31884 - 31928 5.2 - Term 31929 - 31975 6.4 28 14 Tu 1 . - CDS 32003 - 33055 967 ## gi|302860473|gb|EFL83550.1| conserved hypothetical protein - Prom 33193 - 33252 3.5 + Prom 33246 - 33305 5.5 29 15 Tu 1 . + CDS 33332 - 35632 2232 ## Coch_1325 conserved hypothetical protein, membrane + Term 35656 - 35693 4.3 + Prom 35692 - 35751 2.9 30 16 Tu 1 . + CDS 35774 - 35986 232 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 36002 - 36039 -0.7 - Term 35989 - 36027 7.1 31 17 Tu 1 . - CDS 36052 - 39153 3797 ## COG1530 Ribonucleases G and E 32 18 Op 1 3/0.263 + CDS 39790 - 40959 199 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 33 18 Op 2 . + CDS 40997 - 41650 642 ## COG0546 Predicted phosphatases + Term 41756 - 41802 2.1 - Term 41448 - 41485 -1.0 34 19 Op 1 3/0.263 - CDS 41628 - 42359 662 ## COG0313 Predicted methyltransferases 35 19 Op 2 . - CDS 42359 - 42955 624 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation - Prom 42990 - 43049 2.9 + Prom 42882 - 42941 2.0 36 20 Op 1 20/0.000 + CDS 43036 - 43560 597 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 43589 - 43627 -1.0 + Prom 43567 - 43626 1.6 37 20 Op 2 4/0.263 + CDS 43654 - 43842 257 ## PROTEIN SUPPORTED gi|30249608|ref|NP_841678.1| 50S ribosomal protein L32 + Term 43920 - 43951 1.8 + Prom 43963 - 44022 4.5 38 21 Op 1 14/0.053 + CDS 44051 - 45037 1025 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 39 21 Op 2 26/0.000 + CDS 45055 - 45999 1126 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 40 21 Op 3 22/0.000 + CDS 46003 - 46767 236 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 46821 - 46857 -0.3 + Prom 46796 - 46855 3.4 41 21 Op 4 27/0.000 + CDS 46879 - 47118 400 ## COG0236 Acyl carrier protein 42 21 Op 5 . + CDS 47143 - 48369 1536 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 48388 - 48426 1.1 + Prom 48449 - 48508 3.9 43 22 Op 1 14/0.053 + CDS 48631 - 50439 2002 ## COG0481 Membrane GTPase LepA 44 22 Op 2 13/0.053 + CDS 50465 - 51355 729 ## COG0681 Signal peptidase I 45 22 Op 3 18/0.000 + CDS 51367 - 52053 456 ## COG0571 dsRNA-specific ribonuclease 46 22 Op 4 . + CDS 52058 - 52969 1129 ## COG1159 GTPase + Term 53001 - 53041 -0.8 + Prom 53107 - 53166 2.9 47 23 Op 1 . + CDS 53206 - 54255 1057 ## COG2768 Uncharacterized Fe-S center protein + Term 54277 - 54315 -0.9 48 23 Op 2 . + CDS 54349 - 54534 57 ## + Term 54646 - 54682 -0.3 - Term 54384 - 54435 16.3 49 24 Tu 1 . - CDS 54484 - 56262 2102 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 56290 - 56349 8.0 50 25 Op 1 8/0.105 - CDS 56386 - 56997 480 ## COG4566 Response regulator 51 25 Op 2 . - CDS 56978 - 58762 772 ## COG0642 Signal transduction histidine kinase - Prom 58832 - 58891 4.3 + Prom 58943 - 59002 3.1 52 26 Op 1 . + CDS 59022 - 59726 466 ## COG1381 Recombinational DNA repair protein (RecF pathway) 53 26 Op 2 . + CDS 59733 - 60230 551 ## gi|302860497|gb|EFL83574.1| putative membrane protein 54 26 Op 3 1/0.316 + CDS 60233 - 60622 226 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 55 26 Op 4 . + CDS 60626 - 61699 1002 ## COG1472 Beta-glucosidase-related glycosidases - Term 61699 - 61739 3.2 56 27 Op 1 . - CDS 61742 - 62167 124 ## Pnec_1132 protein of unknown function DUF132 57 27 Op 2 . - CDS 62213 - 63202 1294 ## COG0039 Malate/lactate dehydrogenases - Prom 63325 - 63384 6.8 + Prom 63333 - 63392 5.4 58 28 Op 1 . + CDS 63413 - 63901 382 ## gi|302860502|gb|EFL83579.1| hypothetical protein HMPREF0189_00657 59 28 Op 2 . + CDS 63910 - 64557 267 ## gi|302860503|gb|EFL83580.1| conserved hypothetical protein 60 28 Op 3 . + CDS 64550 - 65167 384 ## COG0716 Flavodoxins 61 29 Tu 1 . - CDS 65182 - 66057 402 ## COG0583 Transcriptional regulator - Prom 66081 - 66140 6.7 + Prom 66041 - 66100 7.3 62 30 Tu 1 . + CDS 66247 - 67275 409 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Prom 67299 - 67358 5.9 63 31 Tu 1 . + CDS 67470 - 68483 803 ## COG1073 Hydrolases of the alpha/beta superfamily - Term 68305 - 68349 -0.3 64 32 Op 1 . - CDS 68580 - 69521 776 ## COG0679 Predicted permeases - Prom 69545 - 69604 1.8 65 32 Op 2 . - CDS 69609 - 70373 471 ## COG3541 Predicted nucleotidyltransferase 66 32 Op 3 . - CDS 70378 - 70698 331 ## BF1073 putative DNA-binding protein - Prom 70729 - 70788 7.2 - Term 70832 - 70873 6.2 67 33 Tu 1 . - CDS 70893 - 71948 1322 ## COG3203 Outer membrane protein (porin) - Prom 71973 - 72032 2.5 68 34 Op 1 . - CDS 72099 - 73751 2193 ## COG2986 Histidine ammonia-lyase 69 34 Op 2 . - CDS 73781 - 74134 243 ## Shal_3951 cytochrome c 70 34 Op 3 . - CDS 74136 - 75659 1885 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 75766 - 75825 9.0 + Prom 75755 - 75814 6.8 71 35 Tu 1 . + CDS 75983 - 76624 491 ## COG1309 Transcriptional regulator + Prom 76696 - 76755 4.2 72 36 Tu 1 . + CDS 76782 - 77468 131 ## BDI_2516 hypothetical protein 73 37 Op 1 . + CDS 77658 - 78062 96 ## gi|302860517|gb|EFL83594.1| conserved hypothetical protein 74 37 Op 2 . + CDS 78059 - 78373 245 ## gi|302860518|gb|EFL83595.1| conserved hypothetical protein + Term 78410 - 78465 9.1 75 38 Tu 1 . - CDS 78468 - 79115 476 ## COG0288 Carbonic anhydrase - Prom 79208 - 79267 5.6 - Term 79239 - 79274 5.1 76 39 Op 1 . - CDS 79342 - 80445 825 ## COG3203 Outer membrane protein (porin) 77 39 Op 2 . - CDS 80460 - 81722 1034 ## COG3069 C4-dicarboxylate transporter - Prom 81879 - 81938 7.6 + Prom 81690 - 81749 3.9 78 40 Op 1 5/0.263 + CDS 81964 - 83214 565 ## COG0477 Permeases of the major facilitator superfamily 79 40 Op 2 . + CDS 83236 - 84525 868 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 80 40 Op 3 . + CDS 84559 - 85323 476 ## COG2188 Transcriptional regulators - Term 85338 - 85378 0.4 81 41 Tu 1 . - CDS 85406 - 85819 383 ## gi|302860525|gb|EFL83602.1| putative DoxX - Prom 85839 - 85898 4.1 + Prom 85982 - 86041 6.5 82 42 Op 1 21/0.000 + CDS 86086 - 89016 2765 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 83 42 Op 2 30/0.000 + CDS 89056 - 90354 1448 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 84 42 Op 3 . + CDS 90365 - 91798 712 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 91808 - 91851 6.0 85 43 Op 1 . + CDS 91878 - 92651 756 ## gi|302860529|gb|EFL83606.1| conserved hypothetical protein 86 43 Op 2 . + CDS 92715 - 94712 1736 ## COG1199 Rad3-related DNA helicases - Term 94718 - 94778 1.2 87 44 Tu 1 . - CDS 94780 - 95580 443 ## COG1712 Predicted dinucleotide-utilizing enzyme - Prom 95606 - 95665 3.1 88 45 Op 1 . - CDS 95682 - 96239 501 ## gi|302860532|gb|EFL83609.1| conserved hypothetical protein 89 45 Op 2 . - CDS 96249 - 97013 1135 ## COG4105 DNA uptake lipoprotein - Prom 97129 - 97188 5.6 + Prom 96985 - 97044 5.9 90 46 Op 1 11/0.053 + CDS 97117 - 98301 1106 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 91 46 Op 2 . + CDS 98313 - 99086 606 ## COG1496 Uncharacterized conserved protein 92 46 Op 3 . + CDS 99061 - 99645 516 ## gi|302860536|gb|EFL83613.1| conserved hypothetical protein 93 46 Op 4 . + CDS 99638 - 99976 366 ## Rmar_0262 rhodanese domain protein 94 46 Op 5 . + CDS 99981 - 101321 1417 ## PROTEIN SUPPORTED gi|227996570|ref|ZP_04043584.1| SSU ribosomal protein S12P methylthiotransferase + Term 101494 - 101520 -0.7 95 47 Tu 1 . - CDS 101420 - 102190 175 ## PROTEIN SUPPORTED gi|163764777|ref|ZP_02171831.1| ribosomal protein L22 Predicted protein(s) >gi|301349833|gb|ADCQ01000017.1| GENE 1 3 - 194 122 63 aa, chain + ## HITS:1 COG:no KEGG:Sputcn32_0810 NR:ns ## KEGG: Sputcn32_0810 # Name: not_defined # Def: flavocytochrome c # Organism: S.putrefaciens # Pathway: not_defined # 6 63 58 113 589 68 48.0 8e-11 VNTDGCLKCHVSYEKLAARTDKNDINPHDSHLENLDCGACHHGHKKPVLACDECHEFTNI KVP >gi|301349833|gb|ADCQ01000017.1| GENE 2 314 - 454 251 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDSCTCCCGSKKAEEKKPVDPKVEEAKELKKEEVEAVEASTVEGE >gi|301349833|gb|ADCQ01000017.1| GENE 3 578 - 1249 182 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175150|ref|YP_001408716.1| 30S ribosomal protein S15 [Campylobacter curvus 525.92] # 98 220 2 129 130 74 38 2e-12 MEERVSAESVTDLRTAKFGIQKTRTSQYVFEYKNIWDPVKKRSKPLYRISVGKVIGGEVV IKDEYLQMHPELKQGDIVLQEGKPIYIGGCSVPSELFEILELDHFCLTTAQPEAMVSFYR LLGLPVRKDGERYEIEFPHFKINLHVIGHPLLPEAKVAVPGTGDFCLEIQTDSDSCEIAE AFRKLDVPVEGPVIRHGRKGEMTSVYLRDPDQNLVELAVYPKH >gi|301349833|gb|ADCQ01000017.1| GENE 4 1262 - 1732 562 156 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860448|gb|EFL83525.1| ## NR: gi|302860448|gb|EFL83525.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 156 1 156 156 266 100.0 5e-70 MDTQEKEKKSEEIAAQTTQTKEQPVPAQPSYAELKKEKAKAEAELNKGFPGNRSVGKLFW GYLVCGSLFWALMFYGVGMAFTYRENPNFDAAGLALLICAVILYLWGFAFSVLSFMAAMR LKGKSLLKAIYIFGVIAYLIVLFSGLLVFVHVAMVI >gi|301349833|gb|ADCQ01000017.1| GENE 5 1855 - 3123 1667 422 aa, chain + ## HITS:1 COG:RSc1171 KEGG:ns NR:ns ## COG: RSc1171 COG0527 # Protein_GI_number: 17545890 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Ralstonia solanacearum # 1 416 1 416 416 522 68.0 1e-148 MALIVQKYGGTSVGSVERIKNVARRIAKWQSAGHQVVVVVSAMSGETNRLIALAKEIQKN PDPRELDVIASTGEQVTIGLLAMALQNLGVPARSYTGTQVRVLTDNAFTKARIKEIDSHR IMADLNDGKVVIVAGFQGCDEEGNITTLGRGGSDTSAVALAAALHADECLIFTDVDGIYT TDPRVVSDARKLDVVAFEEILEMASLGSKVLQIRSVEFAGKYRVPTRVLSSLTDPDIPVD EEANSGTLITFEEDPKMEKVVVSGIAFSRNEAKITLPHVPDTPGIAYKILGHIAEANIEV DMIVQNAAKNGLTDFSFTVSRNDLDKAMKVLEKEVTPYLGEEGILTDASIAKISCVGIGM RSHAGVAAKMFRILAEENINIKMISTSEIRTSIVVDEKYMELAVRALHKAFGLDKATKAM EL >gi|301349833|gb|ADCQ01000017.1| GENE 6 3203 - 3787 674 194 aa, chain - ## HITS:1 COG:SPAC5H10.05c KEGG:ns NR:ns ## COG: SPAC5H10.05c COG2249 # Protein_GI_number: 19113730 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Schizosaccharomyces pombe # 6 191 3 191 196 179 48.0 3e-45 MSNNVLILDAGCQNFGKGGELNHYLSRLAEGELTKLGWNVEITLIDSQWEIAAEAEKIKK ADVIIVQTPGWWMSTPWQLKRYEDLVFVQPGVVGNDGRSHLHPDDNYGRGGILTDKKFMI SSTWNAPKTAFDRKGDFFEGRGVDGVFFPLIKAFEFLGMKQLPSFMCNDVVKNPHIGEDV KRWKEHLRHVFKIE >gi|301349833|gb|ADCQ01000017.1| GENE 7 3867 - 4799 684 310 aa, chain - ## HITS:1 COG:CAC1605 KEGG:ns NR:ns ## COG: CAC1605 COG1893 # Protein_GI_number: 15894883 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Clostridium acetobutylicum # 6 307 3 301 301 166 32.0 5e-41 MPETTKIQSVAILGRGALGVMYGDFLTPRMPEGSVYFLADAKRCTRYREQSLTANGRPCS LLFESPEELNKAPDLLIVALKGPALESALQGIKGLISENTIVISVMNGISSEDIIEQELG THRIVHCVAQRMDALFQNGVLTYKNFGELVIGLSPEHKGEPEVLDAVVDFFDRTEMPYVV DKNILHRMWCKWMLNVGVNQTLAVYNDVFRRVHQEGEARETLKAAMREVLSLSQKEGTGL TEQDFRDYLQIIDELNPDGMPSMRQDRLANRLTEVDFFAGTVIQKAAKYGLPVPINCRLY HEIKSFEAQY >gi|301349833|gb|ADCQ01000017.1| GENE 8 4846 - 5421 846 191 aa, chain - ## HITS:1 COG:yddH KEGG:ns NR:ns ## COG: yddH COG1853 # Protein_GI_number: 16129421 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 9 187 22 202 205 97 30.0 2e-20 MSQKEFVKPVGLETPYRLFNLGGTAFVESKQGDDLDIMPASWNCPLDYDKMTVVIDSTHY SRKLIEASEYILLAVPGMGIQKEILYLGSVSKNDNPNKIADSGLKFFTLPDCDFPLPEGC SAWAVIKLIREPHNEKTYDLFMGQIVKAWADSRVFSNNHWHLEEGPDELHSMHYVAGGHF YAIGKRVDVTL >gi|301349833|gb|ADCQ01000017.1| GENE 9 5780 - 6757 1460 325 aa, chain + ## HITS:1 COG:PM0472 KEGG:ns NR:ns ## COG: PM0472 COG2358 # Protein_GI_number: 15602337 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, periplasmic component # Organism: Pasteurella multocida # 3 322 44 360 362 263 44.0 4e-70 MFVKKLIPFAVAASFAMAGATAFAKTEFVTIGTGGITGVYYPTGGAIAKIVNAKKDQYGV RASVESTGGSKFNINAIDSKDLDFGIAQADTQYMAYNGKGAWEGKPVKKLRAVFALAPEA VTFVAAEDANIKSVKDVKGKTINLGDPGSGNRINSTDIFNAVGIVPGKDFRDEKLKPADA PRILQDGRIDGFFYTVGHPNGNIKEATAGKRKVRIVPISEAEVASLLKEAPYYSMTEIPM DQYPDAVNAKDKVKTVGMLATLVTSADTPDDVVYAVTKEVMTNLDQFRKLHPALANLTPE SMLQGLTAPIHPGALKYYKEAGLVK >gi|301349833|gb|ADCQ01000017.1| GENE 10 6844 - 9033 2871 729 aa, chain + ## HITS:1 COG:AF0636 KEGG:ns NR:ns ## COG: AF0636 COG4666 # Protein_GI_number: 11498244 # Func_class: R General function prediction only # Function: TRAP-type uncharacterized transport system, fused permease components # Organism: Archaeoglobus fulgidus # 31 706 3 670 679 369 38.0 1e-101 MTDKSNTEMLLPQAGIPGYIPQPKKNASEDVIGEYKKQVQQLGDKGLKEDKTGLSAKLTY IVALAWAFFQMSTASWLLLDSLYVKAFHLAFALALIYLNLPTLKSELKSRWDLRILLAMK RVTIVDWMIGIVGVIGALYIVIDYAGISERPGMPIGRDLIFGVILIVLMLEATRRVLGPA LPIICGAFIAYVFLGPYLPDVVAFKGATLSRFISQITMDTQGIYGVPLHVSATVVFLFVM FGTMLDRAGGGAFFTRLAISGLGQYRGGAAKAAVVSSALSGMVSGSSIANVVTTGTFTIP LMKRLGYPATKAAAIEVASSVNGQLAPPVMGAAAFIIAEYVNVPYVEVAKAAAIPAFASY IALLWITHIEACKLGLRGLPKKELPKFFVELKNGLHYLIPLAVLIWELVVEMHSAELSVF RAIIVLAIIMVLQPVAIAKVHDADLWAAFKFGIKNTLNSMAAGANNMAGVALATASAGII VGCVSLGLGQQITSFVEALSMGNIFLMILITAVASLLLGMGLPTTANYIIMASLTAPVIV TLATGLTLHGQEIAIPLIAAHLFCLYFGILADDTPPVGLAAYAGAAIAKANPISVGVQGF LYDIRTAIIPVFFLFNSDILLIGIESLPVSLMIFAMTGLGMVAVSSAIQGWLIDKVNILE RLILVAATVVLMFPALISGYVLPYEQRWWGYLVGIALFGIAFLSQKVRYGAKKKNQAAVA ESDEELAVS >gi|301349833|gb|ADCQ01000017.1| GENE 11 9162 - 10109 751 315 aa, chain - ## HITS:1 COG:CC2139 KEGG:ns NR:ns ## COG: CC2139 COG0491 # Protein_GI_number: 16126378 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Caulobacter vibrioides # 70 311 34 281 289 79 25.0 7e-15 MNQMKRRNFLRVGLGSAAVLVAPKTFAAEKALDLSSKQVAALFSEFAQTKKMSPELKAWL DDPVIQKIPPYKVFDNVWYVGLRWVAAYLIKTNDGYILIDTLHPPFVRHLIDNLALLNVD PSEIKYVLMTHGHFDHVGGATTLKPLFKNAKFAMGEKGWEESFEHLGKGAGPKTMIPKEM VLKDGETVTLGNTTVRAIATPGHTEGTFSYVYPVYADGKKYTAVTIGGVGLNAIKDKSQL EEYIRSLDKLSSNKLDISVNLTAHPFSTGQTELIEKIKNRKLGEPHLLVSRSAFLQYVDG LKAGAEKMLNRGKFN >gi|301349833|gb|ADCQ01000017.1| GENE 12 10210 - 11091 243 293 aa, chain + ## HITS:1 COG:mlr7606 KEGG:ns NR:ns ## COG: mlr7606 COG0583 # Protein_GI_number: 13476319 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 1 285 1 288 299 122 33.0 1e-27 MDRLQALEVFMLVAKLGSFTAASRAANLTASRVTHLIQNLEKELGVSLFSRTTRRVSLSS AGQALFEQLDPNLGFITETLQNIKELSNEEPKGTIRISAPVKFGSTFLMKPITVFLKKYP DVRIVLNTTNDPQEIFKGGADIAFVLVTEMPLSGVRHKIGVFSSGIYANLNVMTALSSLT SPEQLRSAELILQEGNASSWNLTGSEGQKYRVSVKKWSFKTDTTQAALIAAKEGLGAALL PIPLGESEKSLTRLLPNWTGVPVEVCAITSSRKISSAARNFIDLAKQEFNREQ >gi|301349833|gb|ADCQ01000017.1| GENE 13 11176 - 12318 1525 380 aa, chain - ## HITS:1 COG:HI1166 KEGG:ns NR:ns ## COG: HI1166 COG0079 # Protein_GI_number: 16273090 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Haemophilus influenzae # 44 373 38 361 366 142 29.0 9e-34 MTLNRRQLFRLVGAGAALSSLGTTAAVAAQPKFVKPTAEKPMLLCFNENPLGMSEKAKEA VAKAAMYGSRYPFAQVIAFKKDLAKFMNVRPDEVLLTHGSAEAIRATIEAEATKNTVLVQ PELTYGDGADVAKRNNIPVKNVKMGPNWSIDLAALRKVATAEAKKHRVLVYLVNPNNPTS TIADSNEIFNWIKSQPKNTFFILDEAYAEFVNDPSFKSCNELVRQGFDNLVVLKTFSKIF AMAGMRLGYAVGAVNVINKIRDHVAYEVMMNQTTLAAALSELNDKEFLKESKESNDEARE ILYKALKELNIPYLPSQTNFVFIDLKAPLKPFADRMKTEHILVGRPFPPAVQWCRISLGT PAEMRYFVEKLKEFRQKGWV >gi|301349833|gb|ADCQ01000017.1| GENE 14 12498 - 12779 504 93 aa, chain - ## HITS:1 COG:RSc1235 KEGG:ns NR:ns ## COG: RSc1235 COG2924 # Protein_GI_number: 17545954 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: Fe-S cluster protector protein # Organism: Ralstonia solanacearum # 1 88 1 88 91 117 62.0 7e-27 MAHMVNCIKLGREAEGLDYPPLPGALGMKIYNNVSKEAWEQWKHLQTMIVNENRLSMADP RARKWLMDQIEAHFFGEGVAHPEGYVAPENKTE >gi|301349833|gb|ADCQ01000017.1| GENE 15 12846 - 14186 1085 446 aa, chain - ## HITS:1 COG:RSc1250_1 KEGG:ns NR:ns ## COG: RSc1250_1 COG0548 # Protein_GI_number: 17545969 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Ralstonia solanacearum # 8 295 11 300 301 296 51.0 5e-80 MSEENKESPIVPVSMDSWVEWFRSVAPHIHSIRGKTIVIDLAGETILQEHFSSLIADISM ISAIGARIVLVYGVRPQVEELMSLKAIESQYVNGIRVTTADALVCVKEAAGEARLDIEAA FSQGLPNTPMAHSQCRVVSGNFVIARPLGIIDGVDFKFTGVVRKVDSEAIHRELDGGRIV LISPLGFSPTGEAFNLTSEDLAASIAGALKADKLILLTNVDGVRRFDEVVTELTAEDARE FINDKLVDEEDIYNLTFALKALEHGVERVHIVPYAMDGGLLAELFTHDGVGTMMTMENLE SLRQATSDDVSGLIKLLEPLEADGTLVKRPREKLERDISHFTVLEHDGVIYGSAALYQFP EEKLGEMAALTVDAAYQGFGDGERLLRHIENQARKAGLNRLFVLTTRTMHWFLKRGFRPA GVDDLPIEKRRLYNWQRRSQIFIKDL >gi|301349833|gb|ADCQ01000017.1| GENE 16 14432 - 18577 3908 1381 aa, chain + ## HITS:1 COG:RSc1251 KEGG:ns NR:ns ## COG: RSc1251 COG1643 # Protein_GI_number: 17545970 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Ralstonia solanacearum # 132 1379 60 1331 1331 1372 56.0 0 MAGDLRDLKAKLLEARKAEKKPQAVSQKQEPPRTKLTLKKKTPAASSGASAASKSAEVKA SAQKKNPAEPSKRPAPKGKGTSLKGLSDLRVLRNQINAPQEQKDINESKKPAASEKKPSR ALVKVGNEVLRNIPPKLELQESLPVSERADEIAEAIKNNQVVIVSGETGSGKTTQLPKIA MMVGRGQKGLIGHTQPRRIAATSIAKRISEEMDAEVGQVAGYKIRFKDELEPGATIKLMT DGILLAETQRDRLLKAYDTIIIDEAHERSLNIDFLLGYLREILPKRPDLKLIITSATIDS ERFAKHFESVNKKPVPSINVSGRLYPVQIRYRPVQDEEENDDRTLMQAIADACDELMGAG SGDILVFLPGEREIREAAEALSPAARKGVEILPLFSRLSIEEQDRIFKTDGRRRIVLATN IAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPISQAAAKQRAGRCGRVANGICI RLYDEKDFEKRPEFTDPEILRSSLATVILRMKSLHLTDVREFPFVQAPLQRAITDGYDLL IELNAVKERGGELTPVGKELARLPLDARLARMLQAAAENQALAEVLIIASAISIQDPRER PLDAQDKAAAAHKKFADEKSDFLSLIKLWNWTQDAIANKESNRLLEQKFRQNYLSVKRLR EWRDVYRQLKELTQEMGWRLNTAPATYEQLHKALLSGLLGNIGMKDVQADYKTPPYIGAR GIKFWPWPGSSLAKKGGKWIMASEIVETTRLFARTLANLEPEWIEKVGSHLIKKSWSDPH WEKKAGNVIALEKGTLYGLPVYTERKVDFSRKDPKTSREIFIRRALVEEELESQAPFWQH NVAMINNIREMEHKSRRPDVLVDDSMIYEFYDKKISQGVVNQQTFDKWREKAEAENPKLL FLQKSDLMRHDAAGITIEYFPKKLEIAGIPMALNYNFDPGSPRDGVTMTVPLYALNQLDP VRLEWLVPGMVKEKVQMLLKSLPQRLRRHFVPLPDWAKSFAQRHEVPDGDLIELLIKEAR EQFRIDIQKSDFKFEMLPPHLSMNYKVVDEHGRQLAMSRSIPQLRSELSTEARKTFQNIA SQDSKVAEDLQDEITEWNFGELPDVMEIKKKGISLIGHPALVDKGEYCSLEVFDDPDQAA RIHRRGLIRLIRLGLKEQIKYLDKNLKSMQTTQIQGASIVSLRKAFPSFEELKQDVIDAS IETAAFTGELPVNEEQFRETIANVKEKLGLLTLELARLLSSIVSEAALAQQKLNSIKSYK EVSEDITAQLSDLFPPHFLLTIPFSQLRHYPRYMKAIQVRIDRLKNDPGRDAERMAEIRQ LTVNYKRELSARRGVYDAKLVEFGNMLQELRVSLFAQELRTPMPVSVKRLNKMWDAILRE Y >gi|301349833|gb|ADCQ01000017.1| GENE 17 18709 - 19875 1069 388 aa, chain + ## HITS:1 COG:RSc1609 KEGG:ns NR:ns ## COG: RSc1609 COG1686 # Protein_GI_number: 17546328 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Ralstonia solanacearum # 91 381 52 339 375 204 40.0 2e-52 MTSSLLLWMEKMRLSAAILCAFLSFSFIAAPTVEAAQKKPAAVKVVKKKAVKKTVVEKTA KKKVVAASAKKKAKAPKAKAAGKRVAVKSVVRKRASARSSSRKFASSKNYRPRKAIDWAT YRSRGPSYAQLIGLKGSSDPLGLSSTAVLAYDMDTNQVLYEKNADQPLPIASITKLMTAL VIVESGVNLDDKFTVTREDFVPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTY PTGKAQFIKEMNIKAALLGMKDSVFYDSIGLNNDNRSSAVDLSYLITGASEYALIRELST TPEASFRIGKREVISSTTNRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFL DSPNKYARANDAEKLRSYLSRESVVASN >gi|301349833|gb|ADCQ01000017.1| GENE 18 20017 - 20799 879 260 aa, chain + ## HITS:1 COG:PA1816 KEGG:ns NR:ns ## COG: PA1816 COG0847 # Protein_GI_number: 15597013 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Pseudomonas aeruginosa # 1 228 1 237 246 191 42.0 1e-48 MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPERQMEAEVIRVHKIT NEFLVGKPKFADIADKFIEFVQGARLIIHNAQFDIGFLNEELRKLGKPSMEEICGKDNII DSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQQGILE IDAAPVSADVHDISDVELPVIRATEEDLSENERVLEMVRKAAKGPALYDLDEETFNAKRK EEQDALDAKEAKLQDLLKNL >gi|301349833|gb|ADCQ01000017.1| GENE 19 21030 - 22097 742 355 aa, chain + ## HITS:1 COG:RSc1286 KEGG:ns NR:ns ## COG: RSc1286 COG1187 # Protein_GI_number: 17546005 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Ralstonia solanacearum # 41 286 199 444 598 262 59.0 8e-70 MAVTRNSRNGRKTPFRPSASVNTRRTPASAESAPRSPARKPQVAKLLTAPFANEKLHKVL ADAGIGSRRDMEERIAEGRISVNGEPAHVGQRVTPSDVIRFDGRIVRRSALENNDVPKVL IYHKPAGEIVSKDDPEGRPTVFDHLPRIGGARWIAVGRLDFNTEGLLLFTDSGNLANFLM HPRHEIEREYAVRVQGTMSPEAKDKLLKGIKLDDGIAKFTTLEEGGGKGFNRWYNVTLSE GRNREVRRMFEAVGLPVSRLIRVKYGNLELPSDLPRGKTRRMSTEETEKWLDSISYKKGM STAPAPRAPERTPRPAASRAPASAPKAGRKFGQRDTSSAIRSSRPMRSRGTRGPK >gi|301349833|gb|ADCQ01000017.1| GENE 20 22421 - 22981 626 186 aa, chain + ## HITS:1 COG:RSc1287 KEGG:ns NR:ns ## COG: RSc1287 COG0779 # Protein_GI_number: 17546006 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 6 186 2 156 162 113 39.0 2e-25 MAVSTQLFEMIDATVEGLGYELVDVEKLPRGLIRVTIDKDGGITLDDCEKVSNQLNNAMT VENVDYDRLEVSSPGVDRPLKRPRDFVKFVGQNVHVELFAPITGEGLPENGRRRLDGTLD AVEGDENNPSITMTLSENRVARTPAEKQRAAKTKAKSDTPAVTVTFPFNDVERANLVPDL NFRGAK >gi|301349833|gb|ADCQ01000017.1| GENE 21 22981 - 24480 848 499 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 4 477 9 472 537 331 38 1e-89 MSRDLLTMVEVLAHEKNVDQSVVLAALESALASAVKKAEFPGEDADIVVKVDPTTGDQKV WRQWLVVPDEQGLQEPDRQILQWEAKEDYSDQGEMNVGDYVRKPLPDVNVTGRRFATDAK QVIIQRLREAERNQLLNEFLERYKDVKVVTGQVKRFDKSDAIIEIGRIDARLPRHQMIPM ENLRPGDRVRAYVLKIDPTSRQQQITLSRTCNEFLGELMRQVVPEINEGLLEIKGIARDP GIRAKVAVQVKDKRIDPIGSCIGVKGSRIQSVSGELMNERIDIIRWADQPAEYVMSALSP ATISSIIVHEDEHKVEVVTPDLDNSKIAIGSNGVNKRLASELTGWEIEVMDDDQAAKKRE DEIAPRRQELCDRLDIDEEVAQVLIENGIETLEEVAYLPEEELLSIEQFDEDTVKELRSR ARTALLTSALEREELLKWADKSLVDLPGMTHEIANKLKPAGIKTLDQLADLSTDELVEMT GIDHDKAAALITKARESWS >gi|301349833|gb|ADCQ01000017.1| GENE 22 24504 - 27230 3497 908 aa, chain + ## HITS:1 COG:RSc1289 KEGG:ns NR:ns ## COG: RSc1289 COG0532 # Protein_GI_number: 17546008 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Ralstonia solanacearum # 1 908 1 964 964 825 56.0 0 MAKTTVKDLAADLNLPVEPLLSQLKEAGLSQSTPADELSEADKDRFLTSLQVARGSSNAG RRKITLTKREKSVITQNGGGSSHAVQVEVRRKRVLVKNPDVVNKAREEAKKAMEEQKEKA RRLAEEAAARAKEEAERKAKEEAERAAKLKAEQEKAKAEEAARRQKAEAERSIEKAKAEA EAAARAAKEAKEAAVKVEADRDAARRAAEAEARAIREMMSAPKKVLTAKKPAQEEKPQEQ KKVHKNSVKKENKGTKNNAKNADNWGDENQKRRTLKTRGGDNSSEESSGWKNDRRNKRGN KHQNQNNKGQGGRPQTPAVQEPVVKDIEVPETITVADLAMKMSVKAVEVIKQMMKLGQMV TINQMLDQETAMIVVEEMGHRAIAAKPEDPEAFLAEEEAKALANYPKEPRPPVVTIMGHV DHGKTSLLDYIRRTRVAAGEAGGITQHIGAYHVETPRGIITFLDTPGHEAFTAMRARGAQ VTDIVILVVAADDGVMPQTKEAIAHAKAGNVPLVVAINKIDKPEANPDRVKQELVANEVI PEDYGGDVPFVCVSAKSGQGIDELLENVLLQAEILELKAVKEGPAKGVVIESRLDRGKGA VASVLVQAGTLKRGDIVLAGATFGRVRAMVDENGKSVQSAGPSIPVEIQGLSDVPQAGDE LIVVSEERKARELANYRQGKYRDVKLARQVNDKLGGLFGQNPEGQKTLSLVIKSDVQGSQ EALVHALTKLSTDEVKVSVVHAAVGGISESDINLAIASNAVVLGFNVRADALARKLAENN GIDIRYYNIIYDAVDDVKAAMSGMLAPERRENHVGLVEIRQVIRVPKVGAVAGCMVLEGV VRRNSHARLLRNNVIIWTGEINSLRRFKDDVKEVKAGAECGISLKGNDDIQVDDKLEIFE VEEVARTI >gi|301349833|gb|ADCQ01000017.1| GENE 23 27305 - 27679 557 124 aa, chain + ## HITS:1 COG:RSc1290 KEGG:ns NR:ns ## COG: RSc1290 COG0858 # Protein_GI_number: 17546009 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Ralstonia solanacearum # 8 113 10 115 123 134 63.0 4e-32 MIKPTKPGRANRIADQIQRDVAELIQKEVSNPKTGLITLTGCEITPDYAHATIYFTSIGS TPEEATEALNSAAPMLHSRIFKLLKIHTVPQLHFVYDKSVERGFEMDQLIRQAREEDGEK VKGE >gi|301349833|gb|ADCQ01000017.1| GENE 24 27680 - 28609 430 309 aa, chain + ## HITS:1 COG:RSc1291 KEGG:ns NR:ns ## COG: RSc1291 COG0130 # Protein_GI_number: 17546010 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Ralstonia solanacearum # 10 302 17 312 314 296 55.0 5e-80 MGRRRKGLKIDGVLLLDKPVGLSSNSALQKARRLLNAQKAGHTGTLDPLASGLLPLCFGE ATKFSADLLNADKEYLTTVKFGEKTSTGDAEGEVIFSAEPKFTFKEFCAVLERFRGEIVQ IPPMYSALKKDGVPLYKFARKGEEIEREPRKVVISSLDIVDFQPPEVTLLVRCSKGTYIR TLGEDIGEALGCGAHLKTLRRTAIADLHIEEAVDLDLFERMTEEQRIAVLLPPDRLLQSL APVKLDEEATKKFLNGMKVRTDERSIEEAKVRVYGISAEKTEFLLGVGCLTSDGVLAPDR LISFVDNDR >gi|301349833|gb|ADCQ01000017.1| GENE 25 28618 - 30468 2359 616 aa, chain + ## HITS:1 COG:RSc1296 KEGG:ns NR:ns ## COG: RSc1296 COG1217 # Protein_GI_number: 17546015 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Ralstonia solanacearum # 3 610 2 605 606 955 77.0 0 MTRAIRNIAIIAHVDHGKTTLVDQLLKQSGTFRANQAVAERVMDSNDIERERGITILAKN CAVEYEGTHINIIDTPGHADFGGEVERVLSMVDGVLLLVDAVEGPMPQTRFVTKKALALG LKPIVVINKIDRPGARPDWVINQTFDLFDKLGATEEQLDFPVIYASALNGFAGFTDDVEE LKKIGNMKAIFDTILEKVPVRDDDPDGPLQMQISSLDYSSYVGKIGIGRIKRGRIKPLQE VLIMNGPDSEPKRAKVNQVLKFQGLERKLVDEAEAGDIVLINGIEEIGIGTTLTDVNHPD ALPLLHVDEPTLTMNFHVNTSPLAGKEGKFVTSRQIRERLERELKSNVAMRMKPTDNEGV FEVAGRGELHLTILIENMRREGYELAVSRPRVVYKEVDGVKMEPFEMLTVDVEENHQGPV MEELGRRKGDLQDMQPDGKGRVRLEYRIPARGLIGFQNDFLTMTRGTGVMSHVFDEYGPV KSGDLGERRNGAIISQDDGNAVAYALWKIQERGRLFIGPGEPIYEGMVIGVHSRDNDIVV TPIKGKQLTNIRASGTDEAIRLVPPIQLTLESAVEFINDDELAEITPKSIRIRKRWLKEF ERRRAARGDSRVGPGI >gi|301349833|gb|ADCQ01000017.1| GENE 26 30428 - 30835 167 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90021194|ref|YP_527021.1| ribosomal protein L20 [Saccharophagus degradans 2-40] # 17 135 4 134 134 68 36 9e-11 MLHAETVALARESKPKCPCGSGKPYEDCCGPLLAGAPAPDARALMRSRYTAFVKEDKDYL LRTWHESTRPKELDFEPLHWRSLKIEAFMPLSETTARVKFVAKARDDAGNMITLKENSRF VKENGRWYYIDGILS >gi|301349833|gb|ADCQ01000017.1| GENE 27 30832 - 31863 781 343 aa, chain + ## HITS:1 COG:RSc1299 KEGG:ns NR:ns ## COG: RSc1299 COG0042 # Protein_GI_number: 17546018 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Ralstonia solanacearum # 12 326 12 327 344 385 62.0 1e-107 MTDNVYDPIGWRFCVAPMLDLTDRHCRYFHRLLSHRARLYTEMVTTGALVHGDVPHHLDF SEAEHRVALQLGGSDPKDLAHGAKLAQQWGYDEVNLNCGCPSERVQKGSFGACLMAEPGL VADCVKAMQDATHLPVTIKHRVGIDANNDYGFVRDFVGTLFNAGVRVFIVHARNAWLKGL SPKENREIPPLRREVVYQLKKDFPEAIIVINGALQDLGECEAELKHVDGVMLGRAAYYTP WLLTDVDARLYNDEHAPVTRDRVIDAMEEYVRFIKPDDHSLRACCRHMHGLLTGLAGAKV WRRTLSDTALIREQGADIFRYAYGKAGWADVESFPDEDREFFS >gi|301349833|gb|ADCQ01000017.1| GENE 28 32003 - 33055 967 350 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860473|gb|EFL83550.1| ## NR: gi|302860473|gb|EFL83550.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 350 1 350 350 664 100.0 0 MNLKSITAQSVVALSLVSVCSMSQAGFLDNLFSSSTKEPVALSTTTQEIMKNHPVWVIDG KDTSAWSVVEGKKPRRGAAPLLLKQDRGDLGLIPAQTDAGYIATKTEKISLSYPTSVVFE KNGTALLKFGASKSPVQIGIKLRAFDVSGLKMSEFLKNRKGEPLAEAEKVGNEVFPAGSI AYKADTTFLNDEMVIPVNQNFTSASTSDELLKNFSSIPFCLKRVSGHAYGIMFDKADPKA VSGTFRVTPVKRETMFCTPTGEAPVATGKWNVVNNGRSHAVVLTMPKEVTPAEYGIEEQE SGVSKMAFVAPGKGDKIFRPGKFFAKGTTLESRRFFFNTTAAEAILKAAK >gi|301349833|gb|ADCQ01000017.1| GENE 29 33332 - 35632 2232 766 aa, chain + ## HITS:1 COG:no KEGG:Coch_1325 NR:ns ## KEGG: Coch_1325 # Name: not_defined # Def: conserved hypothetical protein, membrane # Organism: C.ochracea # Pathway: not_defined # 9 722 8 723 763 474 41.0 1e-132 MDTFLTCTMVFLMLLASFNLFVGVSNDAVNFLSSALGSKSARYNIVMGVAAAGVLLGCTF SSGMMEIARSGIFNPQLFTYWDVMLIFFAVMLTDVLLLDTFNSLGLPTSTTVSIVFELLG ASVVSAAYKLWVSTGTIIGLGAYINNEKALSIIIGILASVVIAFTFGTIIQWLMRYLFTF RYQKVYRYVGGIYSGLCLTAIFYFLIVKGAKGASFMTPALIAWLDANTETLMWSFFLTIT VVFQILIWFWNFNALRIVILAGTFALAFAFAGNDLVNFVGVPLAAMQSAGIAASAEAANP ALTPTTLYMGALKESVVTPTIWLIISGLIMVCTLWFSPKAQRVVQTAINLSASERSEKEQ FGSTVGARVLVRSGLGVNRIINQILPRSVLDNIDRHFEKPRLKKGEVPLPFDQVRASVNL VLASILIATATSMKLPLSTTYVTFMVAMGSSLADGAWDRETAVYRISGVMAVISGWFLTA FTAFIAAGIAVLLCIWFGPIFMVIGGVCVVALLVRSNFFSKDKKVEAMEGFEAGLSKEEL RKRFNAAIDRNLKQTIDIFSNTTMNFLSEDYSAVKKDKLEAQELLDHISLLRSQYYLMIS HGQGAGKDYDARNYYYRTFSNVKDVAQDLRNTVNQMEQHLANSHSVFKGQLRTNLLKAVD ALSNFQKSLSEYVMNGSTTDEVLLRLSNTNLEEVNAFQLELMKEIEVNKMPLHRSELYLS ILQLYREIINRYTVIVLLQRELNFMLTERHEEENAPAVPAKPQAQQ >gi|301349833|gb|ADCQ01000017.1| GENE 30 35774 - 35986 232 70 aa, chain + ## HITS:1 COG:NMA1685 KEGG:ns NR:ns ## COG: NMA1685 COG1942 # Protein_GI_number: 15794578 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Neisseria meningitidis Z2491 # 1 67 1 67 69 74 61.0 4e-14 MPFVRICVTGDEERPTSEQKKELIAGVTKLVGDVLGKNTSNMVVIIDEIPMENYGIGGKT VRERRKEKQS >gi|301349833|gb|ADCQ01000017.1| GENE 31 36052 - 39153 3797 1033 aa, chain - ## HITS:1 COG:RSc1040 KEGG:ns NR:ns ## COG: RSc1040 COG1530 # Protein_GI_number: 17545759 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Ralstonia solanacearum # 1 636 1 639 1014 660 62.0 0 MKRMLFNATHAEELRVAIVEGQKLIDIDIESSERQQRKSNIYKGVITRIEPSLEACFVDY GEERHGFLPFKEISRSYFKEGVDVRTATIKEALSEGTELIVQVEKEERGNKGAALTTFIS LAGRYLVLMPNNPRGGGVSRRIEGEEREELRENMSKLPTPKGMSLIARTAGIGRTVEELK WDFDYLLQLWQAIVEAATPQYEDTEGNFVTAPVGPLGQKYERVNPAPFLIVEESNLVIRA IRDYFQPDIAEILVDTDDIYEQAKQFMGHVMPDMINRVKRYTDDVPLFSRFQIENQIETA YSRTVPLPSGGSIVIDHTEALVAIDVNSARATAGGDIEATAFHTNEEAAEEVARQMRLRD LGGLIVIDFIDMEDPAHQRAIEQRIKEAIRHDRARVQIAKISRFGLLELSRQRLRPSLYE GSHITCPRCNGIGAIRDTESSAIQVLRILQEEALKDGTTALQAQVPVDVATYLLNEKRDD IAKIEHRHHIEVILIPNKTLETPHYQIERLRTEDQLLTEGAPSYKRVEELAPEPEAPYSR AQNVAPSTKPRQIPVIKGLPVREDAPKHVEPAKPSKEPAKKEKSFFQKILAFFTGNSEAE EKEEAKNNSSRGDKSSVRKERGERKNRRQERDDQRKTRTPVAKQEKVERAPKQPRQVKPT KTEDRRQKETVEKAKNVPAVRPAAVEKTEKPERIERTRKALKENSALQDKRSAKPVQAPA AVEEAVKPVEKQNVPAPVEAVQVQPQVEKPVPAPTPAPVAAETPAVQAEEKKAPADAVEG IIVETAVRVVPSVESQSNATEQRPRTRRARRLRKDRGDREPRASRSVVPPAPVSPVVAAI EDVVMSEHAVPQVNAATIRADEHLPRVEADKLHLTEEAPKHARLRRERAPRKPAADFVTK VESHDSEVQAVSSAAPKAEVVKEAPKPEHVQTEAVKPVVTENTVVKPADVKPVETKQVET AAPVKAQKEAASIEKPVDLKPMLEKAGLELVGTTKKDIPVREEAPKPKLGRKRIKRVVQE DSAPLELVQTKKE >gi|301349833|gb|ADCQ01000017.1| GENE 32 39790 - 40959 199 389 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 112 369 41 279 285 81 25 2e-14 MMKSRQNNERTDPKKGRTSAKSRTRSGKDLLADLNISASTGKVTQRPKPKTALPRVKTSA QEPKERKAAEPKVIFKKVDESNDGQRLDNFLLSQLKGVPKSLIYRVVRSGEVRVNKGRAH VDTRLQSGDEVRIPPIRYTEKESEHSAPPLKLSEMPPILFEDQNIMVVDKPAGMASHGGS GISYGLIERMRASRPELPFLELVHRLDRGTSGVLVLAKTRKALVRLHEMIREGEMHKTYQ ALVKGDWQNDRQHAKFPLFKYVTPSGERRVRVDPENGLPSHSIFRLKERFGPVSLVEVDL LTGRTHQIRVHAAELGFPLVGDEKYGDFAFNDEVAHGSLGVPFKRMFLHSGKICFHHPIT GEELEIEAPLPKDCVELIEVLEQRKAQNK >gi|301349833|gb|ADCQ01000017.1| GENE 33 40997 - 41650 642 217 aa, chain + ## HITS:1 COG:RSc1042 KEGG:ns NR:ns ## COG: RSc1042 COG0546 # Protein_GI_number: 17545761 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Ralstonia solanacearum # 6 199 8 201 219 142 41.0 4e-34 MHALKMAVFDFDGTLVDSVPAIARGIQLANEEIGIAPVSYETAKSIIGLGFKDIIPIVAP DLPESEYGRYKDIYVRYFLQSDPSLKLFPGVLELLRELQDAGIKTAIATGKSRKGLSRIV NRMNVWDYFDDSITADEALPKPDPLMLNTLLERNGLTMDEIVMIGDTEHDIKLGKAAGVR TIAVTWGAAPIERLEAYKPDAIVRTMEALKTTLDELA >gi|301349833|gb|ADCQ01000017.1| GENE 34 41628 - 42359 662 243 aa, chain - ## HITS:1 COG:NMB1908 KEGG:ns NR:ns ## COG: NMB1908 COG0313 # Protein_GI_number: 15677739 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Neisseria meningitidis MC58 # 6 232 10 236 241 182 46.0 5e-46 MNKGKLFMLPVPIADGVLNDTLPEHTIQTARELKFFLAENAKSARAFLKFCGHPSPIASL SIEEIGHRPDSAKVRGWLKPALEGNDIGIVSEAGCPGVADPGAQIAAEAHKLGIRVVPLV GPSSILLALMASGMDGQHFRFCGYLPIKEPARTNAIKDLERKSASSEGETQLFIETPYRN SGMLADLVKNCAPTTLILAATDISGPEERIRTFSAADWKKQDLSLPKLPTVFGILGAKRA RRA >gi|301349833|gb|ADCQ01000017.1| GENE 35 42359 - 42955 624 198 aa, chain - ## HITS:1 COG:STM1189 KEGG:ns NR:ns ## COG: STM1189 COG0424 # Protein_GI_number: 16764544 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Salmonella typhimurium LT2 # 7 196 4 194 194 164 46.0 7e-41 MDNKAALILGSSSPFRRELLERLQIPFTTCSPDVDETPLKGESPKDLSLRLSVLKAQAVA AQHPHCVVIGCDQVLELNGRPVGKPGNFENAFKQLSEMSGQTVTFHSAMTVIDAKGNLQS TVVPTFIRMRNLPPEGIREYLEREKPFNCAGSAKIEKLGIALVAECKSDDPTAIIGLPLI ELTTMLAQAGIHVLPELN >gi|301349833|gb|ADCQ01000017.1| GENE 36 43036 - 43560 597 174 aa, chain + ## HITS:1 COG:PA2971 KEGG:ns NR:ns ## COG: PA2971 COG1399 # Protein_GI_number: 15598167 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Pseudomonas aeruginosa # 10 169 9 173 178 73 30.0 2e-13 MSAYLKQTDYVNAYDLARDKKVIEGQAKLSDLPRLKDMILPTEGTVTYRICGMTAKKGWP GAVMELATVVPLVCNRCTKPMDFKIEREVAFRFAKSEEEADSIPIDEDDDTEVIVGSDKL NLADWIEEELILSLPLVPAHEEGCQTDGPEESKDEVQKPNPFAKLKDLKGLRKV >gi|301349833|gb|ADCQ01000017.1| GENE 37 43654 - 43842 257 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|30249608|ref|NP_841678.1| 50S ribosomal protein L32 [Nitrosomonas europaea ATCC 19718] # 1 60 1 60 60 103 78 3e-21 MAVQQNKKSTNKRGNHRAHDFLTNPPLAVEPTTGEVHRRHHISATGFYRGKKVIATKADD QE >gi|301349833|gb|ADCQ01000017.1| GENE 38 44051 - 45037 1025 328 aa, chain + ## HITS:1 COG:RSc1050 KEGG:ns NR:ns ## COG: RSc1050 COG0332 # Protein_GI_number: 17545769 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Ralstonia solanacearum # 6 328 4 326 326 340 54.0 3e-93 MSENCFSRIASTGSFLPKRAVSNEELAQDLAKIGVETSDEWIRTRTGIEQRYLASGEEST TYLASEAAKQALEAGGFSPDEIDLIIVATTTPDSVFPSTACQVQAILGASGAGAFDIQAV CSGFAYALSIADSMIRAGSAERVLVIGAETLSRVLDWKDRTTCVLFGDGAGAVVLEKSDE PGILASELKADGTRGVHVLAADSHIDGGKVVGDPFIRMDGRLVFKAAVEKMTESARNVLT KANLATNDVDLYIPHQANLRIMNMVREKLGIDEEHLMISVNQHGNTSAASVPLALDKAHR SGKLKRGDLVLLQGVGGGFTWASVLLKF >gi|301349833|gb|ADCQ01000017.1| GENE 39 45055 - 45999 1126 314 aa, chain + ## HITS:1 COG:RSc1051 KEGG:ns NR:ns ## COG: RSc1051 COG0331 # Protein_GI_number: 17545770 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Ralstonia solanacearum # 7 305 4 302 309 296 57.0 3e-80 MQDKKIAFVFPGQGSQAVGMLSTLADEPIVRETLKEADEALGFALSKLIAEGPAEELSLT VNTQPALVCASIAMYRFYLQEGGRKPDLLAGHSLGEYSALVAAGALDFTDALQLVRYRAE QMQAAVPVGEGTMAAILGLSDDQVKTVCLECATNGVVEAVNFNTPGQVVIAGTVAAVQEA MEKSLAAGAKRAIKLNVSGPFHSSLMKPAALAMEEKLKTVDLQKPFLPVLHNVDVQIHEE PDVIRDVLAAQVASPVLWADTVRKMEEAGVMEIYEVGPGAALSGMVKRITKGITAKALNS RAALEEAAAANQEK >gi|301349833|gb|ADCQ01000017.1| GENE 40 46003 - 46767 236 254 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 16 254 6 242 242 95 31 9e-19 MTQSVFTADALAGEIVLVTGASRGIGAAILDVCVKAGATVIGTATSDSGAAKISARIQEL GGKGEGRVLNIADREGTDAFMKALEADFGSVTVLVNNAGITRDTLSMRMKDSQWDEVIET NLTGGFRLSRACLKGMMKARHGRIINIASIVGMMGNAGQANYAAAKAGTIAMSKSIAREI GSRGVTVNCVAPGFIATDMTDALNDAQKQALLAQIPLGRLGSADDVAEAVVFLASSAAAY ITGQVIEVNGGMRM >gi|301349833|gb|ADCQ01000017.1| GENE 41 46879 - 47118 400 79 aa, chain + ## HITS:1 COG:NMA0043 KEGG:ns NR:ns ## COG: NMA0043 COG0236 # Protein_GI_number: 15793075 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Neisseria meningitidis Z2491 # 1 76 1 76 78 89 76.0 2e-18 MDNIEQQVKKVVAEQLSINEADIKNESAFISDLGADSLDTVELVMALEDTFGIEIPDDQQ EKIQTVQDAIDFIEAHKKA >gi|301349833|gb|ADCQ01000017.1| GENE 42 47143 - 48369 1536 408 aa, chain + ## HITS:1 COG:RSc1054 KEGG:ns NR:ns ## COG: RSc1054 COG0304 # Protein_GI_number: 17545773 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Ralstonia solanacearum # 2 405 4 407 410 541 69.0 1e-153 MRRVVVTGLGMVSPIGNTVEESWNNALAGKSGIGVITQFDASSFGSRIAGEVKNFEVEKY LPAKEARRFDRFIQLGIAAAVQALDDSGLTFEGEGAERAGCAIGSGIGGLPIICQNYQSY MERGERRISPFLIPGAIANMVSGQLSIMRNLQGPSLAYSTACTTGLHSIGEAAWMIRRGD ADVMVAGGAESTVCPLGVGGFDNMHALSRRNDDPTTASRPFDKDRDGFVLGEGSGVLVLE DYEHAKKRGAKIYAEIVGYGLSADAHHITTPSAEGPMRCMKNAMRQAGLNPSDIQYLNAH GTSTSVGDVNETNAIKLAFGEDAKKLVVNSTKSMTGHLLGGAGGIESVFTVLALKNQVSP PTINIFNQDPECDLDYCANVAREMPIRYAMKNSFGFGGTNGSLIFGQV >gi|301349833|gb|ADCQ01000017.1| GENE 43 48631 - 50439 2002 602 aa, chain + ## HITS:1 COG:NMA0977 KEGG:ns NR:ns ## COG: NMA0977 COG0481 # Protein_GI_number: 15793934 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Neisseria meningitidis Z2491 # 6 602 1 597 597 900 74.0 0 MSKEPMKQIRNFSIIAHIDHGKSTLADRLIQRCGGLSEREMESQVLDSMDLEKERGITIK AQTATLNYKAKDGQTYLLNLIDTPGHVDFSYEVSRSLSACEGALLVVDATQGVEAQTVAN CYTAIELGVEVLPVLNKMDLQSANPDEAKEEIEDVIGLDATDAIEASAKTGMGIDEILER VVERIPAPQGDPAAPLQALIIDSWFDNYVGVVMLVRVVNGTIKPKDKIRLMATGANHLVE QVGVFTPKSQTRPELSAGQVGFVVAGIKELKHARVGDTVTNAAKPAEEALPGFKEAKSQV FAGLYPVESNQYDALRDALTKLQLNDAALHFEPEVSQALGFGFRAGFLGLLHMDIVQERL EREYNMDLITTAPSVVYEVLLRNGEVIHVENPSKLPPVDKIAEIREPIDSVTIFVPDEYV GPVMTLCNQKRGVQLDLAYHGRQVHLHYDLPLAEIVLDFFDKLKSLTRGYASMDYEFKEY RAADVVKIDILINGDKVDALSSIVHRANSVARGREIVTKMRSIIPRQMYDVAIQAAIGVN VIARENVKALRKNVLAKCYGGDITRKRKLLEKQKAGKKRMKQVGTVEIPQEAFLAILQQD DK >gi|301349833|gb|ADCQ01000017.1| GENE 44 50465 - 51355 729 296 aa, chain + ## HITS:1 COG:RSc1061 KEGG:ns NR:ns ## COG: RSc1061 COG0681 # Protein_GI_number: 17545780 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Ralstonia solanacearum # 1 296 1 305 305 283 47.0 3e-76 MTFSLILFLLTVFTGVLWVLDVFIWAPKRRAAAQDELTAFDRDNADSLRRGEQTVVATRN AIVQASTDRPKWLEYTAGFFPVIFFIFILRSFLFEPFRIPSGSMMPTLETGDMILVNKYQ YGLRLPVLNTKILPIGEPERGDVVVFRYPPNENIDYIKRVIGLPGDKIEYINKKLSINGK PVPIGEIGEYYDEAKMQSLEEFLEKLDKTEHHLLINPRAPSSVYPLSTHTDPKACDYVPG GLVCMVPKDKYFVMGDNRDNSEDSRYWGFVPEKNLVGRAFMVWMNVSKPSRIGFFN >gi|301349833|gb|ADCQ01000017.1| GENE 45 51367 - 52053 456 228 aa, chain + ## HITS:1 COG:RSc1063 KEGG:ns NR:ns ## COG: RSc1063 COG0571 # Protein_GI_number: 17545782 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Ralstonia solanacearum # 2 219 1 218 256 230 55.0 2e-60 MLPLTVLEERIGYTFKNKELLRRAMTHRSFSAEHNERLEFLGDSVLNCVIGNALFLKDKH FDEGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVEAIFGA VFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGLPLYDIVEIRGA PHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKALDSEAIRNLKG >gi|301349833|gb|ADCQ01000017.1| GENE 46 52058 - 52969 1129 303 aa, chain + ## HITS:1 COG:RSc1064 KEGG:ns NR:ns ## COG: RSc1064 COG1159 # Protein_GI_number: 17545783 # Func_class: R General function prediction only # Function: GTPase # Organism: Ralstonia solanacearum # 11 303 3 297 298 300 51.0 2e-81 MSENKETEKSEDFRSGYVAVIGRPNVGKSTLINALVGEKVSITSKKPQTTRDRIMGVLTT DNAQYLFVDTPGFQTKHSSELLARMNQSVRSSLSDVDAVVMVIEATGWRPEDQVVLNLLS KDAKNVILAINKTDEVKESEAMLPLIKESMEKFPFADVVPVSAEKTRQLDVLLDVIRKYL PEGDKLYEDDIYTDKSPRFLAAEIIREKAFRLLGDELPYGVAVMIDKWEETDDQARIFAT LLVNRESHKGIVIGEKGAKLREISRLAREDISKMLGKNVYLEVWVRVRKGWGDDAQVLKS LGY >gi|301349833|gb|ADCQ01000017.1| GENE 47 53206 - 54255 1057 349 aa, chain + ## HITS:1 COG:MA0367 KEGG:ns NR:ns ## COG: MA0367 COG2768 # Protein_GI_number: 20089264 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 55 348 58 353 355 230 43.0 3e-60 MEKSRISRRVMLKGAAAAVLALDGSVSAVSSASAAEQSPLVQKTPVIGSKNVTGQKVEGS VAKVYFSPVIDAASLIKLYNLVNEEIYGKVAIKLHTGEPHGPNILPRDMVQALQKTIPNS TIVETNTLYGGGRENTADHRKTLEINGWSFCPVDIMDEHGDVNLPVRDGFHLKEVAMGKG IVDYDSMLVLTHFKGHAMGGFGGSMKNIAIGCASGQVGKRQVHGASMTGAPNFGAMPVKD TFMELMADSAQAVINHFGKHITFINVLRNMSVDCDCAGTSAQKPTMKNIGILASNDLLAI DQASCDLVFAAPDGKDVIERIQSRHGLRQLSAMAEKKMGNPQYELIVVK >gi|301349833|gb|ADCQ01000017.1| GENE 48 54349 - 54534 57 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MASKDQTLSSLYLKNKPPGSQKIFLRTGGLSTHEQGEFLVIFEAELFSFCCVLTRDAAKH H >gi|301349833|gb|ADCQ01000017.1| GENE 49 54484 - 56262 2102 592 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 88 589 1 477 484 258 36.0 2e-68 MHTKLLLTASIALALAGNCFAAVKDGSYTTTVTGHNAPLTVTVDIKNGKISDISVKDLES PGVGKVAIKQLSAEIKDHQTTKLDKISGATITSFSLLGAVKQCLKQAGAQGDEFNKPLPA ADKSPIKDNADVVIVGGGGAGLASAVSALQNGASVIIVEKLGFLGGSTNVCGGALNASGT KYQKALGIEDNPQKHFEQTMKGGHNVSDPKLVKVLADNAPSALLWLESMGLKFNPKVGAA TGALFQRSHYPNPAGGNTYVQVLEKQLQKYGKDKLRVYLESPATELIMKDGRVVGVKADN YGKPLTLMAKNGVVITTGGFGSNVEFRQKVNTGVWKEADLGKEIGCSNIGVAAQGQGLQL AQKAGAELIGLSDIQVHPNGSPGTGLMLDIKTSGRNRLFINTNGDRFVNEGAARDVLSKA VFAQPGSTYWLVQNKLRYPDENAIDLLSGRTMRDMLAQGRVKKAANLDELAKIINVDPNR LKAAIESYNKVARHEVETDQFGFKANHTDDRPMTEGPWYVARKVPTIHHTMGGIHIDTGA HAVNANGQRIPGLYAAGEVTGGIHGANRLGGNAVADLMVFGRIAGKNAAEAK >gi|301349833|gb|ADCQ01000017.1| GENE 50 56386 - 56997 480 203 aa, chain - ## HITS:1 COG:mll0990 KEGG:ns NR:ns ## COG: mll0990 COG4566 # Protein_GI_number: 13471106 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Mesorhizobium loti # 5 189 16 200 212 135 39.0 3e-32 MLIRIVDDDEDLAESLKFLLEPEGWEVVSYPSAEDYLKSDAPSVEGCLLLDIRMPGLSGL ELQEKMKERGWEVPIIFLTGHGDVDVAVQAMKFGAYDFLQKPVKAERLIQAISSVASMLK EKRDYGASLEYWYKKFQLLTDRERSVTILASQGLLNQEISERLNISTRTVHTHRLNSYKK LDVHSTSDLAPIAALYRSRKITL >gi|301349833|gb|ADCQ01000017.1| GENE 51 56978 - 58762 772 594 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 33 579 29 575 592 145 25.0 2e-34 MQLGFRCLAICCFCSCVVFGGESFSEEKRVVTIGVLDSSLSATDKSAIAQTLEALENLPG YRLDVQYYNPSELEEQLIQKKLDYFIGTSGFYRRFQSFGLRSVATLFTETAPNPRYATGS VFVVRNDSPIKTISELKGKSALASWSKGFSSYFAPMGEISKQGFDPESFFAAYKTYGPPM TNLLQKLENHEGDVVLIRACLLEDLEKTQPDIFKRFRVLEEKKDNRLRCKHSTDLYPNWT LVATPSAPWTETREITKCLLNIPDSTGFGWATVPDFNTIDELYKSLKAGPYAYLRIQTVQ SFIYHYRFPLLFALFCILMLCVHSWRTNVLVKRRTQSLRLAYEKEAELRRKIRESELRID QLQKTEIIGAMSSLIAHEINGPLATIDNYCRGIKRKLEVEGIDGSWLNRPLSLIAKQTSK ISDIVSRVRAYAKRDEPEFTKIEADKLLKTCVSDIRMRYPNCRIVLSETEPSVVLGHVLE FEVLLENIIKNAIQAAQTADTNRIEIRQLCENNSMYVRILNASSVRSSEELEKHLQPLHS SKNQGLGIGLLICRTIAEKMRGNLSVTYKDGEVFTEVKIPLFVPQEKENADQNC >gi|301349833|gb|ADCQ01000017.1| GENE 52 59022 - 59726 466 234 aa, chain + ## HITS:1 COG:RSc1065 KEGG:ns NR:ns ## COG: RSc1065 COG1381 # Protein_GI_number: 17545784 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Ralstonia solanacearum # 5 234 33 272 272 182 44.0 6e-46 MTEKGRSEYRVDQQPAFVLHTYPWRETSLIVEFFTRDYGRIPLVARGAKRPMSQYRGLLN PFCPLAVSYSGKGEVKNLTRCEWYGTIPMNEKVLMSAFYINELLVRLLPRGEPEPSLFTI YYDTLKKLALEKDYLVPLRYFERDFLKVLGYALPSDPFPAKHYRFVRGDFVANDGTAFEG SGISGATLEALSSNTLQSGTQEWEARMLMRDLIRYYLEDAPLNTRRILNELNKL >gi|301349833|gb|ADCQ01000017.1| GENE 53 59733 - 60230 551 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860497|gb|EFL83574.1| ## NR: gi|302860497|gb|EFL83574.1| putative membrane protein [Burkholderiales bacterium 1_1_47] # 1 165 1 165 165 332 100.0 5e-90 MKNPTPGKNPFELESYRDRMPLHVRELYDDMTRNYAKLQGRAGLGRFWRFWAFAVCYLAL LMVISDTTTDTILVFVGLVLCGWLYIAVPSFTISVRRLHDDGKPVFWAVLPQVAIFYLLA EFTLGLPPNWIVWGILGAITAVAFGFMSLPGIPLDDAYGEEPKED >gi|301349833|gb|ADCQ01000017.1| GENE 54 60233 - 60622 226 129 aa, chain + ## HITS:1 COG:SA1875 KEGG:ns NR:ns ## COG: SA1875 COG0736 # Protein_GI_number: 15927646 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Staphylococcus aureus N315 # 1 128 1 116 119 98 43.0 4e-21 MISGIGCDIVDIARIKKACLRQPKFCETVLSESEQPIYAVRCEASKERGYRYLASRWAAK EAFSKALGTGFRGAVNFSDISILNNELGAPYIQLSGKLAVQIKNQGLKCHVSISDTDSSA MAMVVIEKE >gi|301349833|gb|ADCQ01000017.1| GENE 55 60626 - 61699 1002 357 aa, chain + ## HITS:1 COG:RSc1068 KEGG:ns NR:ns ## COG: RSc1068 COG1472 # Protein_GI_number: 17545787 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Ralstonia solanacearum # 3 340 7 343 350 330 50.0 2e-90 MEKVDRPLGPVVVDIAGTSLTDEEVKILQNPMVGMVILFTRNYENREQLHNLTHDIHSLR NPSLLIGVDHEGGRIQRFREEFTKIPSARSLGQLYDTDPQRAHNLTAACGLVMASELRAC GVDFTFAPCLDLDYGQSAVIGNRAFHRNPRVVSILATAMVSGMAQAGMACCGKHFPGHGY ATADSHVELPVDDRPLTDIRTNDEVPYASMGTLLTSVMPAHVTYPQVSPAPAGFSKKWLQ EELRGRLGYNGLIFSDDLSMKGASEVGEITARSDAALAAGCDMILICNDPESAKTVLENQ RWIRTKAFDERVARIQPRGKFPSWDGLKLSQNYLACVKQIEAFNAEIAEKADKTATL >gi|301349833|gb|ADCQ01000017.1| GENE 56 61742 - 62167 124 141 aa, chain - ## HITS:1 COG:no KEGG:Pnec_1132 NR:ns ## KEGG: Pnec_1132 # Name: not_defined # Def: protein of unknown function DUF132 # Organism: P.necessarius # Pathway: not_defined # 1 115 1 117 137 81 40.0 1e-14 MNPVIFDTNLLLDFFVFQDPKTSVLWEAAKERKFRTATCDGALSELEDVLKRPQFKISPE RLEAIKEEFLSVAEILPISIEAKARCKDPLDQKFIDLTLSCSPALLISKDKLVLRCARHL RPLGSNILPPEKAIAILLANN >gi|301349833|gb|ADCQ01000017.1| GENE 57 62213 - 63202 1294 329 aa, chain - ## HITS:1 COG:DR0325 KEGG:ns NR:ns ## COG: DR0325 COG0039 # Protein_GI_number: 15805354 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Deinococcus radiodurans # 1 319 3 320 330 378 61.0 1e-105 MKKPVKVVVTGAAGQIGYSLLFRIGAGDMLGTDQPIDLMMLERNNEQSLKNSRGVQMELD DCAFPLLNSITATSDPYVCFKDAEIALLVGSRPRTADMQRADLLAANAQIFVEQGKAMNE VADRNIKVLVVGNPCNTNAYIARRCAPDLNPRNFTAMMRLDENRTLTQVAQKTNSTVAQI SKLAVWGNHGGTMFPDLTNATVAGKPALDLITEDWYVNELIPTVAKRGSAIIQARGHSSA ASAANAAIDHIHDWVLGSNGEWATMAVPSDGSYGIPEGLTFGMPVICKDGDYEIVKGLEL NQFQKDHIAANIRALEEERAIVDEIIAKA >gi|301349833|gb|ADCQ01000017.1| GENE 58 63413 - 63901 382 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860502|gb|EFL83579.1| ## NR: gi|302860502|gb|EFL83579.1| hypothetical protein HMPREF0189_00657 [Burkholderiales bacterium 1_1_47] # 1 162 1 162 162 326 100.0 2e-88 MFVKECSVIACASLLCFCVGLCAAQESSVKESVIQNPIGTAQKKEILIKVTTGSREFQVA LNSTPEAKLFYSQLPLSVSMGRFGGREFYGRMPGKMKVSSEGQYTFKDGTLTYCPTNHTV AFFYAQTLRPHLTMAVYPMGRVLGNLNIFHELDDSVTFHFSK >gi|301349833|gb|ADCQ01000017.1| GENE 59 63910 - 64557 267 215 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860503|gb|EFL83580.1| ## NR: gi|302860503|gb|EFL83580.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 215 5 219 219 362 100.0 1e-98 MPKISAGTLVKAALLAAFPFLVGINGTEESLHEYLAIVVLLIAVQHLLKQKWWFGMMRFG LRNQPLKLKMTALLLVSFCCTVISGILISRYAFPAARIKAIQPVILDLHHFFGYTTFFLT FLHVGAHLKARKLFTRMPYLPLFGALFSIPICFLGLGYFDDEGPLFSLLDSLDLFFFETG KPPVLIITEVFLLGFFMICVGLFTEAAVARRRINA >gi|301349833|gb|ADCQ01000017.1| GENE 60 64550 - 65167 384 205 aa, chain + ## HITS:1 COG:MA0407 KEGG:ns NR:ns ## COG: MA0407 COG0716 # Protein_GI_number: 20089301 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Methanosarcina acetivorans str.C2A # 25 202 7 175 179 84 27.0 1e-16 MLRRNLLLSPLAFCLPSVLAQAKGKRAVVVYFSWYDNTFQERIRPSDIDETTSASLKAPG QVTLVAHWIGKDLGLPIYPIVVKDRYTTIYEDCLDRVIGEKTERVFPELTGPTDLPEFDL LFLGFPNWSYTIPRAVWSFLSKVPKANKTIAPFCVHGTGGLARTIRDLKSAAPEARLTRT LSIDRSELAESRKRALDWAQKVYFG >gi|301349833|gb|ADCQ01000017.1| GENE 61 65182 - 66057 402 291 aa, chain - ## HITS:1 COG:lin0450 KEGG:ns NR:ns ## COG: lin0450 COG0583 # Protein_GI_number: 16799526 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Listeria innocua # 1 290 1 288 291 165 31.0 9e-41 MDLKVLKSFITVCETGNITRASERLFISQPALTRQIKDLEEEVGSILFDRSTRALSLTES GHLFYAKAQEILGLVNSAKKELAERGNFLRGTVKVGAVETSLMKFLAQKMKAFRETHPHV LFELYSADGDDLKRSLDENILDIAFLLEPVEIAKYVRTVLPGRERWGLVVKDNDTFKDKQ FLTYKEVIQTPLILPRRYIVLEEISSWLHVPEKELTVSAYHNLPSNALDLVENDFGGLLC VEGSFENRQKCGMKFLPISPERYSGHVAVRRKNRQLSRPAELFWESLQDSE >gi|301349833|gb|ADCQ01000017.1| GENE 62 66247 - 67275 409 342 aa, chain + ## HITS:1 COG:TM1006 KEGG:ns NR:ns ## COG: TM1006 COG0667 # Protein_GI_number: 15643766 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Thermotoga maritima # 27 333 15 323 333 306 49.0 6e-83 MTSHLKTTLFQIYHSKKLHFCKEDRAVSCFGFGVMGMTHHRGIPKDRNEMILLLRKATDL GINLFDTAEIYGPFNNEILVGDAFGNREDVLICTKFGHKIVDGKPVPGGLDSSPQHIRKV CEESLKRLQRERIDVFYQHRFDPNIPIEEVAGACEDLIREGKIRGWGLCEVSSEIIRRAH ETCPLTAVQSEYHLMWRRPETAVLPLLKKLGVAFVPYSPLNRGFLSGTITPNTKFFAAND NRASLPRFTPKAIQQNMTIVRCIERFGSEHGMSPVQVTLSWLLRKANVIPIPGTTQYDHL LENIESIRFEVPEEEWRELEDEIFQIPIQGDRYSGIEKAQTA >gi|301349833|gb|ADCQ01000017.1| GENE 63 67470 - 68483 803 337 aa, chain + ## HITS:1 COG:MA0419 KEGG:ns NR:ns ## COG: MA0419 COG1073 # Protein_GI_number: 20089312 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Methanosarcina acetivorans str.C2A # 44 335 34 326 327 214 37.0 2e-55 MFKVKNVLMASCIGACAAAGVSAGTVADNINVQGSSPVLFLSAGNKIAGNLYLPPSYKEG SRYPAVVVSHPWGGVKEQTAGLYAQQLAKKGFITLAYDASHYGKSEGTPRDFENPAERVN DIRSAVSYLSGRKDVSAVGTLGICAGGGYTLHEAQDDPRVKAVATVVAYDIGDAARNGIA GAQVTAEMRQTTMNAVAKEWTEEESGKKPVVLPLLPDKKDWTDKTDAFTKEAYSYYRESR GAHPNATNKFHLSSIGLHMAYYPLDHMEKISPRPVLLIAGEKAQTLKFSQQAYERAQKPK ELVVVPGATHFAMYDKPELVGPNIEKLSTFFAKYLSK >gi|301349833|gb|ADCQ01000017.1| GENE 64 68580 - 69521 776 313 aa, chain - ## HITS:1 COG:RSc1095 KEGG:ns NR:ns ## COG: RSc1095 COG0679 # Protein_GI_number: 17545814 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 20 301 21 297 310 132 29.0 1e-30 MFAVFVILPQFCLILLGYLLTKRPSFAKKDFWNVTEKLVFYVLFPPLIFLSVAKANLQIG QCSYFLLISISAMSIAVITAWLANFLIKESQWTKWSIFHCGFRFNTYIGFAICSTLFGDK GIAYLSLLIACWVPLSNVIATVGLVHASRLSGSENCGKRKNFLVAVLSNPLILATLLGLV CNSFSIELPKLLEDVLKPLGQSSLALGLICIGAGLKINDLKRYLQLMIIGSLQRLMVVPA VTLTFAIVFQLLPLESCVLLLFAALPTAQSCYVMTASMGGDSAAVADLTSAQVIFSLLTL PFWINVMLKFFPA >gi|301349833|gb|ADCQ01000017.1| GENE 65 69609 - 70373 471 254 aa, chain - ## HITS:1 COG:RSc0225 KEGG:ns NR:ns ## COG: RSc0225 COG3541 # Protein_GI_number: 17544944 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Ralstonia solanacearum # 1 220 25 243 281 185 41.0 7e-47 MKKEICSTLAEIEKLHNVKILYACESGSRAWGFPSPDSDYDARHLYIRPLESYLKLFPER DVIEGPIDEVKDFVGWDLQKALKLLMKGNAPLIEWLHSPIVYKDNLWLRENLIRLFNNNS NFNALYRGYFGLAMNNFKAYLTGESVKPKKYLYVLRSILACEWIKQRNSIPPVLFRGLYE ELLTPSAPIYSELENLLKIKVEAKERTAGAHFPVVDKFIDDFFKESKQQFFSSKEPVNVD EYDKFFLECLRREN >gi|301349833|gb|ADCQ01000017.1| GENE 66 70378 - 70698 331 106 aa, chain - ## HITS:1 COG:no KEGG:BF1073 NR:ns ## KEGG: BF1073 # Name: not_defined # Def: putative DNA-binding protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 105 3 107 108 157 87.0 1e-37 MPKNTMGTKLPRKLEQKMAIVGEQIKLARLRRDLSIAQVAERATCSPLTINRIEKGLPTV SIGIYLRVLYALQLDDDILLLAKEDVLGRTLQDLSLKHRKRASKKG >gi|301349833|gb|ADCQ01000017.1| GENE 67 70893 - 71948 1322 351 aa, chain - ## HITS:1 COG:RSp0955 KEGG:ns NR:ns ## COG: RSp0955 COG3203 # Protein_GI_number: 17549176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 182 1 189 368 77 30.0 4e-14 MMKRILVSAIIAAASINAYAESNVTLYGVIDQAVAVTKHKHEAAKVRIDDGIYAGSRFGI KGTEDLGNGNSVGFILEQGFYADSGDAAFEGKAFSRESLLQAKGKWGEVAFGRAGGLSSD CGTYTILHGSALWTSYYTDGNVAGVFVTSDRMDNMAIYKSPEFANTTVTAMYSNGIGGDD QKWSHNDHYYGIGLDFNKNETVFSVMVEMYDNKDLKADKTYLVTLGGQQGFGDWTFWAGY QYAKDSQMMPAWKAAPTGLSASGVTQHAVTAAIGYKVFGGEWKLQGNYAHGKVNENNQKY NIYSVGTVYEYPLSMRTQLYAYAGYGKANKYLKNDGDFNSWTACLGISHSF >gi|301349833|gb|ADCQ01000017.1| GENE 68 72099 - 73751 2193 550 aa, chain - ## HITS:1 COG:SMa0306 KEGG:ns NR:ns ## COG: SMa0306 COG2986 # Protein_GI_number: 16262618 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Sinorhizobium meliloti # 24 546 27 544 546 280 34.0 5e-75 MKKPLVISILLAIAPLSFAATHNLDGRTLTVDELWAISAPGEKVAVTPEGWARIKASYKA PIDAATDGRDIYGLTVNYGALKDQKVAGASVEAEPNRSASIKFNERQMRIQAAGLEPYFD DRISKMAMVIRLNQMAAGYTGMSEAAAKAFQEYINNDVCPLIPSRGSEGANDLSMATHIG LALMGEWDVSYQGKRVPAAQVRKELKLQPYHPLGMDGISILSNSNVAEAQSIAAVKKAEH YLALSPVVIASSLEALNGNVSPYLWHTVETKGWPQGHEAAEAVLANLKGSYLWKKDAKRY LQDPLSFRSAGYILAAAMEELNQTKGLLNTAINHTTDNPIVNTEAKNDRWYSNAEVLDEM RAGKPTVYVNSCSNFDNTQLALQMESLTKALGQVMHISAWRTTQLVDDHRTGLSTYLVAK ENKGGDGFANIAQSMSGLYADGMALTNSVIGYGVPTSIGIEETFSNLNATADRLSKMADV GYEIYAYEVLHTTQAMDMRKQDGKQMGQGTTKLLDGYRKVVPFVTKDRIFTPDINNGLKF LKSYQIPANN >gi|301349833|gb|ADCQ01000017.1| GENE 69 73781 - 74134 243 117 aa, chain - ## HITS:1 COG:no KEGG:Shal_3951 NR:ns ## KEGG: Shal_3951 # Name: not_defined # Def: cytochrome c # Organism: S.halifaxensis # Pathway: not_defined # 4 117 5 116 116 88 42.0 9e-17 MKKFFIPLFAALLSCSAFAADAPVLAGMPMKHSMAAQMQCSTCHDNTTEFTKPSTQKCES CHGPMAQIKTKANPQDKYPHQSAHYGNTVDCVVCHSEHKASQDLCSNCHQTQWTNFR >gi|301349833|gb|ADCQ01000017.1| GENE 70 74136 - 75659 1885 507 aa, chain - ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 18 503 40 499 502 194 30.0 4e-49 MKPLSSFSRRNFLRTLAATGLASGSAFAAPSPTAQPFNEVHDLVIVGSGFAGLSAAYAAL KAGVKDILILDKMEAFGGNSCLCGGLMSVPLNPKQQKQGIKDSVDLMVADMTKAGRGFNH PDLARKFAENAVNICPMLDECGVQLMDKVIRLGGHSAPRTMVPTAASGGGIVVPIHNWLK KNGVQFRNRSQVIDLLMQDGKVTGVLVNCDYNWKDGTSKKEQRIGSRGGIVVATGGWGQD KDFIKTTMPVYSLLECTSQPGATAEMLKALLKSGCLPSMLDMYQLGPWASPDEKGAGPGS FFADYAFAEGMAVNPKTGCRFMNELADRRTRADAELNVLSESTPDKINYPIVFCGEKTTE HAEGFKAAYRDKTVFRYETLADLAKAYDIPLKALQQQVDEYNKIVAGTLKDPFAKPLDVK QTLKAPFYAMRLTPKLHYCMGGIAVNPRSEVLSTATLAPIPGLYAAGEVTGGVHGMDRLG GCSSVDCMVFGLEAGRNAAAYLKAQGN >gi|301349833|gb|ADCQ01000017.1| GENE 71 75983 - 76624 491 213 aa, chain + ## HITS:1 COG:mll3646 KEGG:ns NR:ns ## COG: mll3646 COG1309 # Protein_GI_number: 13473146 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 22 194 2 169 189 92 32.0 4e-19 MIAAMNFLYKVGSPMETKKQTRKTSSKTKELILEVAREIAAEKGVGQLTLEAVADRAGIS KGGLLYHFPGKKELIIALMDSYVSHLSAELESATEPFKSHPQALVLGFIHWYKKFNGIAA TNRTWGAAVFAVQSFDPQLMEPLHNWYRQLFEKIRNSGPASLDTATAIMAIEGLFMLSLY NLDQLTTEEKSRIIQHIEDRLLMRELNPKNSIE >gi|301349833|gb|ADCQ01000017.1| GENE 72 76782 - 77468 131 228 aa, chain + ## HITS:1 COG:no KEGG:BDI_2516 NR:ns ## KEGG: BDI_2516 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 10 228 7 225 522 145 38.0 1e-33 MAINQLKALPLGSDFIALRIADEIYVDKTEMVFSLVVKRGKYFLARPRRFGKSLLISTFE SLFKFGLRDFKGLAIENLWKEDAVYNVVRLDFSEIKDFADAESFSERLISLLSRKFAPYG FCYELLPFQTVSDQLSDWLTAREKNSLVLLIDEYDAPLTSCLNNKTVFKEVRRALSAFYS VLKSNEGALRFAFITGITKFNRTSIFSELNNLSDLSLDVEYGNLLGYT >gi|301349833|gb|ADCQ01000017.1| GENE 73 77658 - 78062 96 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860517|gb|EFL83594.1| ## NR: gi|302860517|gb|EFL83594.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 134 48 181 181 267 99.0 2e-70 MDYWFESGGRPSVLVEYLKSHALRHPEEYGREKSISLSTLSGSSDLENLSDLGLLTQAGY LTIKAVRYGDTVFLDYPNLEVKCAMAQLYMERLLDGKVAGQVGAGPIVKVLAEESAESVF HILNRLFMAIDYPR >gi|301349833|gb|ADCQ01000017.1| GENE 74 78059 - 78373 245 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860518|gb|EFL83595.1| ## NR: gi|302860518|gb|EFL83595.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 7 104 1 98 98 180 98.0 2e-44 MKDEASLCAYVQVYFSGAGVEPKVEQHNAHGRSDLEVSVGERHWVFEFKVSYDGKKEEET LSEGISQMKARHYEEQGDFKELKRVVLVYSIPSRQFVKWKLLTF >gi|301349833|gb|ADCQ01000017.1| GENE 75 78468 - 79115 476 215 aa, chain - ## HITS:1 COG:AGc4521 KEGG:ns NR:ns ## COG: AGc4521 COG0288 # Protein_GI_number: 15889755 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 205 1 208 213 140 35.0 1e-33 MDNFHKLIEGFHNFKQTYFLKERQYFESLEKAQNPKTLVVACCDSRVDPAILLHCKPGDL FVIRNVAALVPAVTQASNPCSVMSAIEYGVKHLNVEHIVVMGHSHCGGIHGLMTPESIAG ETYIQDWVSIASPALERLQAMTGDEDEKTRSRHCEEGAVLISLDNLLSYPWIAERVKNGQ LKLHALYYDLSEGNLYRFSPDSEDFELLFHTIENP >gi|301349833|gb|ADCQ01000017.1| GENE 76 79342 - 80445 825 367 aa, chain - ## HITS:1 COG:RSc2108 KEGG:ns NR:ns ## COG: RSc2108 COG3203 # Protein_GI_number: 17546827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 8 348 7 351 381 67 26.0 4e-11 MKTFKYSLIISSLLVACSVQAESAVTIYGRIDTGIAYDNYGGDTHKDNTITMQSGLNTAS RIGIKGIEEITDDLSVGFRLENRFASDSGALKGGLKGNKIFEGCSYLTVSSKKFGEVSAG RISGISSGSGAYDLQFFMDSFGGGTYGIGLAPVKSSRIDNMITYRTPMLAGFQGTLQYSM KTEESEEGDENTSDVDKFYAGGLRYKNGNLNLVAAYEETTWGKKVPAAAKGTTSKKIATI GGSYRFKPVTVYLQGQYFDGVNKLDGFSSAKNIKGFGTYAGTQFWFGLSSWQSMIYYRDY KVNTINNIEDHKAHMLGIATKYLYRPSKSIDIYIGGGFSTWDGQNAKTKKFTKDHAFNII TGITKYF >gi|301349833|gb|ADCQ01000017.1| GENE 77 80460 - 81722 1034 420 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 414 2 425 432 286 45.0 4e-77 MSINVAFALIVVLITIYALIKRYETRCVLLASGFAMAIFSLKPMIAFQQFDASMTRSSLI IAICSAMGFAATISLTKCDVHLVALLTKPLRRLGVLLLPACMFVTGLCAVAIPSTAGLCA AVGPSMIPILIRSGFKPAIAAAAVVCSTTPALLNPGVAHNVFVSKIANMEVMEFIGRVTS PILLFSLAIIVGLTIVCFIYRDYKKPQHQTSESNELADNLPKKINPLYALAPLVPVVILL YVSLYTTMKMSVATAMLIGTFYALCVTRSNPAEVTKKFFDGMGKGYGNILGIIIAAGVFA AGLKAAGVIDLLVQTLTNANHLARIGGAFGPYLMGVLTGSGDAAAFAFNEAVTPNAPSFG LQIADLGWLAVISGSFGRLSSPLCGGLILVAGIASVNPMEIVKRSAPVMLLMVLAAYWLL >gi|301349833|gb|ADCQ01000017.1| GENE 78 81964 - 83214 565 416 aa, chain + ## HITS:1 COG:lin2274 KEGG:ns NR:ns ## COG: lin2274 COG0477 # Protein_GI_number: 16801338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 11 414 7 403 407 172 31.0 1e-42 MNEFLILKKKRWICLILFCLANFFTGALYIWSVFSGPLAQKIGLATSTNLTAADISPVFG VATGVTPFLMLAGGYINDKFGPRFVIAAGGLFIGIGYLLCAVSESISMLYIAYGLLVGIG TGMVNGCTINCAVKFFPDKRGFAGGTVTAFLGVGAACLPFVVNWLIREYGISTACTVFGI CAGLVIFTCGLLTFKCPDDFALCFTSSARAKVTKGLDVNWLGMIRSPLFIPLYLLFVCGS TMGLMLISSMSGIAEYQIGVGTALAATSVSVISLANTTGRFLSGTVSDMLGRVQTLVLML SAAVLGFFLLIQSGRGDLTTFMSGIVLVGICYGAFIGTYPSLIADEFGHKHNSVNFSLMM TGYSIGGIGGPILLRLASKEGSYVGAYATCIGLAVVGALCAAAYFYLKRREAKTSR >gi|301349833|gb|ADCQ01000017.1| GENE 79 83236 - 84525 868 429 aa, chain + ## HITS:1 COG:HI0584 KEGG:ns NR:ns ## COG: HI0584 COG1473 # Protein_GI_number: 16272528 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Haemophilus influenzae # 6 419 5 419 423 357 43.0 3e-98 MDQKYIEEMVCSRRKLHKIPEEGWTEFQTTYFVVEFLRGLGLPVFVGKANLNLDEVLGRD VELVQDSIERALKAGVPQSFIEETEGFTGAVAVLDTGRPGPTTAFRSDMDCVIVRETKDA DHLPNKLGFASEHPGLMHACGHDGHTAVGLELARWLVEHKDQLCGKFKLIFQPAEEGVRG ARAMCEAGIVDDVDYFLSGHVGGVIGRGEVAVMDGGFLASSKFDIAIEGKPAHAGNAPQQ GNNALMAACAASMMLQGIPRHADGVTRVSVGTLHAGEGRNVIPAHAKLQMEVRGETKEVN EFMKEYVYDIFAGVDKAYRVKSKVELAGESTTLMQCPAIYDKVEEVMKKIPGIKVLPRIH TPSGSEDCALFIRRVIERGGQAGFILYGCNHHGHHRPNFEIQDEQSLPIALSIYTGFAEL VNGIGGKVK >gi|301349833|gb|ADCQ01000017.1| GENE 80 84559 - 85323 476 254 aa, chain + ## HITS:1 COG:RSc1997 KEGG:ns NR:ns ## COG: RSc1997 COG2188 # Protein_GI_number: 17546716 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Ralstonia solanacearum # 14 252 38 270 274 145 34.0 6e-35 MEDFELESKSYFFPNRLTLFEQVSQSLSRLISEKKWRPGEMLPNETELAQMFNVSPGTMR RALKLLVDKGVLIRHQGKGTFVAEFSNNQQLVYKRYIKLQPDNPEVDEAVPTKSDLLFFE RVSPSLEIQQLLNLQPSDQVVHAGRTLSASSGIVTFDELWGVGKDFEKLTKENLAHHREK LLYAFYQSELGISITRSEERIKAVLLPLDLCNVFKLSYPQPVIEIRRVAFTFEDRPVEFH RQLSFTSRYHYRIF >gi|301349833|gb|ADCQ01000017.1| GENE 81 85406 - 85819 383 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860525|gb|EFL83602.1| ## NR: gi|302860525|gb|EFL83602.1| putative DoxX [Burkholderiales bacterium 1_1_47] # 1 137 3 139 139 229 100.0 4e-59 MISTILHWTCDPISASMASLLFRWAIALAMLPYGVQKLFHPENAAKFPKVLFFSPKVGYY SAAIIETFVPLFLMAGLLTRLAVIPAIVSFTIATKVTIGKDLTSPALPYLFGLIAIFIVG SGLYSVDYWLLYALAGN >gi|301349833|gb|ADCQ01000017.1| GENE 82 86086 - 89016 2765 976 aa, chain + ## HITS:1 COG:RSc1269 KEGG:ns NR:ns ## COG: RSc1269 COG0567 # Protein_GI_number: 17545988 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Ralstonia solanacearum # 24 976 3 953 953 1286 63.0 0 MKQPQNTPIVCGPLSGKKFVQGEKVIKDLIENSYLFGGNAPYVEELYEQYLEDPNSVDEK WRQYFDRLQQAPASDGRVETIDVPHAPIVEAFAQRASEPRSAVCPVSERDLDLAKKQVAV QSIIGAYRFLGSRWANLDPLHRRERPKIPELEPSFYGLSETDMDSTFSAANTYFGADKMT LRDLIAALKQTYCSDIGIEFMYISDPVIKRWWQQKLEPCRSTPSMDAKSKKRILEELTAA EGLERYLHTKYVGQKRFSLEGGESFIVAMDEIVETGAAQGLEEMVIGMAHRGRLNVLVNT LGKAPSELFAEFEGHYKSKDLPAGDVKYHNGFSSDVVTASGPIHLALAFNPSHLEIVDPV AVGSVRARQDRRHDPKGRRVMGVLVHGDAAFAGQGVVMETLNLADTRGYGTGGTMHIVIN NQIGFTTSDPRDKGSMTYCTDPAKLIEAPVLHVNGDDPEAVVFATRLAMEFRKSFSRDVV VDIVCFRRLGHNEQDTPGLTQPLMYKKINVHPGTRQVYADKLALQGVVSPEEAKEMVAAY RRSLESGIPPRQTALIEGKNPYAVDWSRYNGSWTDDVKTSVPLDELKRLTDVITTVPENF KLHPLLQKVIADRRLMMQEEIRVDWGLAEHLAFATLLTGGYSVRISGEDSGRGTFSHRHA VWHDQNRDRWDSGIWIPLEHLGEHQAQFTVIDSVLSEESVLAFEYGYASSSPKCLTIWEA QFGDFANGAQVVIDQFISSGEAKWGRKSGLTMLLPHGYEGQGPEHSSARVERYLQLAADT NMLICQPTTAAQIFHLLRRQMVGNIRKPLIVFSPKSLLRNKMASSDLEELSEGKFETVIG EIEELDADKVRRILVCTGKVYYDLVKYRKEHEIDDVVIVRLEQLYPFPHKSFREETSGYS FASEVVWVQDEPQNQGAWFYVQHHLLEEMPSGARLSYAGRPASSSPAVGYASKHAEQLKE LVENAFGRLKGFIQTK >gi|301349833|gb|ADCQ01000017.1| GENE 83 89056 - 90354 1448 432 aa, chain + ## HITS:1 COG:RSc1270 KEGG:ns NR:ns ## COG: RSc1270 COG0508 # Protein_GI_number: 17545989 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Ralstonia solanacearum # 1 432 1 418 418 488 66.0 1e-137 MSIVEVKVPELSESVSEASLIEWKKKVGEPVKADEILIEIETDKIVLEIPAPADGVLASI EQPDGAAVLSDQLIATIDTEGMVGAQAEAPKAAVAEEVIISTPAAAPAPTPSPAAPTAAA STPGAFMMPAAEKLMANSGLSATQVAGTGVGGRITKPDVIAALKSAQPVAPSAVAAAPAQ PAAPKSAPAKQATPVASLDGRPEQRVPMSRLRARVAERLVESQSNCAILTTFNEVNLAPV MALRAKYKESFEKKYGVKLGFMSFFVKAAVHALKQYPIINASVDGYDIIYHGYMDIGIAV GSPRGLVVPVLRDADQMTFAEIELKIADFAKRAKDGKLTLEELTGGTFTISNGGVFGSLF STPIINPPQSAILGIHATKPRPVAENGEVVIRPMNYFAMSYDHRIIDGREAVLALVAMKE ALEDPARLLLDL >gi|301349833|gb|ADCQ01000017.1| GENE 84 90365 - 91798 712 477 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 8 476 4 457 458 278 34 6e-74 MKDDIQTFDVVVIGAGPGGYVSAIRAAQLGLTVCCIDDWVTDGKPAPGGTCTNVGCIPSK ALLASSCLFEEIRDKASEHGIHVEEPTIDVPTMIARKAKIVRQTNDGILYLFRKNKITFL NGRGFFVTSDEDGYLIGVEGRDETRVFAKNVVLATGSKPRQFPGVPFDEERILSNEGALK LKSVPSTLGIIGAGVIGLELGSVWKRLGADVRILEAMPSFLPFADSAISREALKAFKQQG IDMEFGVHIDSIQNDGDRVIVQYKDKDGKNSEMWVDRLIISIGRVPFIAALDAPVVGLKL DERGFVEVDAENRTNLPRVWAIGDLVKGPMLAHKAEEEGVAVAERIAGRKAVTHIERVPS VVYTEPEIAWVGKTEDELKNAGKPYKVGVFPFMANGRARAVGETQGFVKMLADAETDLVL GLHIIGPQAGELIAQGCDALSFGATAEDLALICDPHPTFSEAIKEAALAVNKEGINF >gi|301349833|gb|ADCQ01000017.1| GENE 85 91878 - 92651 756 257 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860529|gb|EFL83606.1| ## NR: gi|302860529|gb|EFL83606.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 257 1 257 257 346 100.0 7e-94 MRIPLILFTLGLLSFNAWAVEPPSTVPFAKRYDPASITTASRAREVIAAYDNEKRVWENW YKEETAQCYRNFFVTYCLDKAKSERTEHINEARRVWLVARDFLRKERSEQAVKDRKAAEA KQAAKNAKMDAQPARVAKAPSKTRDVTPRKPGEGHAHAADRVLTPEEEKANAEAYAMKQQ EREQRIAEQESKVPEAPSMTPEERIQARAERRAAAEKKRAENIKKRAEKAAEYERQVKLR EEQEKKNSVTGDLIPRL >gi|301349833|gb|ADCQ01000017.1| GENE 86 92715 - 94712 1736 665 aa, chain + ## HITS:1 COG:RSc1626 KEGG:ns NR:ns ## COG: RSc1626 COG1199 # Protein_GI_number: 17546345 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Ralstonia solanacearum # 8 657 34 691 713 524 42.0 1e-148 MPSEFVKEVADVFAKDGPLSKVTANYTPRPSQIEFATSVAEALEKGKTLVAEAGTGTGKT FAYLVPALLKDQKVLISTAGKTLQDQLFTKDIPALLKALGMGCRVALLKGRSNYICKQRL EHALQEDSYVAKSREEVVHLYRIKKFAGQSVTGERGDITDVPENSGIWPEVTSTGENCLG PNCDHYNDCFVMQAREKAKEAQLLVINHHLFLADISLKDNQITDFLPEFDLVVLDEAHQL TNIATNFFSQTLNLYDVRNLAADAVSQGYGVNKQIDWNGIYKTISNACDDLISTTHNILN TKDKQLAVAKFKDKHLLVEPFKKLLNAVEKLSNAVHVHKEASPEMTKLDERCTEALDLIE YWRDVFNGKAVSRSMKGPLLDWFTVKPKNIFFNTTPLSYAEMLKSAREVQGKPWVLTSAT LAANGDFKHFIDQVGLEDAETKSWESPFDFKAQGMLYITEDLPTPSASNFSDEVAKRIWP FIKKNKGRAFVLCTTLRAMEVISEALRYFAETEGVSMNILVQNEQSKQELLRRFRSEENS VLVGSMSFWEGVDIKGDALSLVVIDKIPFPPPDDPVFEGRSKELEAEGKNSFNEISIPEA IMLLKQGAGRLIRDEKDEGLLILCDNRLLSKGYGTKIWKSLPDFARTKVFDTAMNFLERC QEPRG >gi|301349833|gb|ADCQ01000017.1| GENE 87 94780 - 95580 443 266 aa, chain - ## HITS:1 COG:TM1643 KEGG:ns NR:ns ## COG: TM1643 COG1712 # Protein_GI_number: 15644391 # Func_class: R General function prediction only # Function: Predicted dinucleotide-utilizing enzyme # Organism: Thermotoga maritima # 66 265 52 240 241 121 39.0 2e-27 MSLVSVIGAGSLANVFANVLHDFLPEFKLHSVLARNQEKAQVFASKYNCSAVFSFEDFLK NAAPVVVELAGGAALKEYTLPILKSGRTLICLSSGAFTDDAFKQEAICTAAKNNGRICIV NGAIGGLDFLQTCALQRGASEVVIETTKSPKSLLGAPALEGKTLDLTKKMVVFEGGVQEA IKGFPKNINVGVITALASENPHTKVKIVSDPEVHSNTHKIIYRSALADAVMEFSGKPDPA NPKSSTTAALSAAACLKNLYSPISFW >gi|301349833|gb|ADCQ01000017.1| GENE 88 95682 - 96239 501 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860532|gb|EFL83609.1| ## NR: gi|302860532|gb|EFL83609.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 185 1 185 185 375 100.0 1e-103 MRNKKFFAVTGAALLLLAGCRTIPQNPEQMTCSDLQYLAEESIDKLGLPFFATQVKYPGD WRPFARNQWIKEGSRVRVRDNKRDYLQMEMLEIGGTTMEQTPYRVRIPVAQCKNANKERM ATLEYKNLIIDSPEKISRTEAIDFKGKESVDYLARLICGFQPIPALDKTQIMAQKWKNCT PDSAS >gi|301349833|gb|ADCQ01000017.1| GENE 89 96249 - 97013 1135 254 aa, chain - ## HITS:1 COG:RSc1627 KEGG:ns NR:ns ## COG: RSc1627 COG4105 # Protein_GI_number: 17546346 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Ralstonia solanacearum # 6 223 50 267 289 211 49.0 2e-54 MFKGVEDPTEGWTADKLYVEARDNLNEGNYETARDYYQKLEARYPYGRYSQQAQVETAYS YFKEGEPQQAIAVCDRFLRQYPEHPLSPYALYIKGIATLDEDEGWMSYLTRQDLSKRDAQ AARDAFDIFKELVLRFPNSRYARDARERMHELVEAQAKYEINTAKYYYVRDAYIAAINRA ENVLLNFQTSPQAEEALIIMRDSYNKLGMDDKAADIQRILDANKNRGSYDTYLRAQEFEA AKATAAPKDGAAVK >gi|301349833|gb|ADCQ01000017.1| GENE 90 97117 - 98301 1106 394 aa, chain + ## HITS:1 COG:RSc1628 KEGG:ns NR:ns ## COG: RSc1628 COG0564 # Protein_GI_number: 17546347 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Ralstonia solanacearum # 4 338 15 353 358 283 49.0 5e-76 MNIELDDYSQTEAFEETELQESSKIETFEVTLDLDGERLDKVLASSLKDISRSRLKTLIE DGLVKVNGKTVDKPKEKMSFGDEVSVEIKPRLEDMDFIATPMDIDVVYEDDDILVINKPA RLVVHPAAGHWDDTLLNGLLAYNPIFRTLPRAGIVHRLDRDTTGLMVVAKNEKAMLDLVQ QLQARTVKREYWALTRGKAPADKVIEAAIERDPRNPLRFTIGKGGRAKPATTHIRCIDQK EVKGKPFSWVACRLKTGRTHQIRVHMESIGLPLIGDPLYRNKLPKPKEDGSVLNSFDRQA LHASRLGLIHPVTKETMEWFAEPPQDFRDLMDELGFGPWDRPSEVFGDPVVMINNDELSE NQKAVGKISSWDDFDFGDDDEDADSNWKIERTKE >gi|301349833|gb|ADCQ01000017.1| GENE 91 98313 - 99086 606 257 aa, chain + ## HITS:1 COG:HI0175 KEGG:ns NR:ns ## COG: HI0175 COG1496 # Protein_GI_number: 16272140 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Haemophilus influenzae # 7 254 1 241 244 188 40.0 1e-47 MQSKPELEVIVPEWNAPENIRAFFTLRSGGMSAGAYGDKDGFCGLNLGNHVGDNKYSVRG NRRIVTDMLGAEPKWLSQVHSSRVVRAEDNNTEEQADAEFTTAAGIPCVVMTADCVPVLL CDKKGTIVAAAHAGWKGLADGVLQTTVAAMRKEIGDEEEIIAWIGPHIRKDHFEVRVDVA DYYRASAVKAAADDALESIGEGGWHLDLARFAKEALKQAGVTEVTDCERDTYSDPEHFYS YRRDKVTGRHGAFICKR >gi|301349833|gb|ADCQ01000017.1| GENE 92 99061 - 99645 516 194 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860536|gb|EFL83613.1| ## NR: gi|302860536|gb|EFL83613.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 194 1 194 194 379 100.0 1e-104 MVHSSASDSSRRNSSEISWYYIQPGFKLIDAKKCAWAFAFFVFILFVISRFSHSLIFDSP WALLIVPGVAAFVIWLMLVMQPHRQVYYRLDQDGVFCEYRSSASALTSFLDLILSLLGSI IKLKNTFYINKHSSRSRMFEWGEVVAVHEAPYWKKITLQAGLHGELNLWTNAENYGNVLT LVREYVAKERKNYD >gi|301349833|gb|ADCQ01000017.1| GENE 93 99638 - 99976 366 112 aa, chain + ## HITS:1 COG:no KEGG:Rmar_0262 NR:ns ## KEGG: Rmar_0262 # Name: not_defined # Def: rhodanese domain protein # Organism: R.marinus # Pathway: not_defined # 25 103 60 137 145 78 46.0 8e-14 MIKKILGIAVLFGLMMTAAQAKTFLVDVRTPSEIATTGKVEGALVANYSAPDFVDQFKAL GAKPDDDIELYCRSGRRAEMASQILSKLGYKNIRNLGGYEAAAETLKRPLVK >gi|301349833|gb|ADCQ01000017.1| GENE 94 99981 - 101321 1417 446 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227996570|ref|ZP_04043584.1| SSU ribosomal protein S12P methylthiotransferase [Kangiella koreensis DSM 16069] # 1 442 13 453 455 550 63 1e-155 MTKRPPRVGFVSLGCPKALVDSERIVTELRAEGYLISSTYKDSDLVIVNTCGFIDAAVQE SLEAISEALSENGKVIVTGCLGGKNTEEGNFVALRFPKLLGVTGPEQTEEVLRLVHDNLP RPHEPFGDLVPAGGVLLTPKHYAYLKIAEGCNHHCTFCIIPSLRGPLVSRPIGSVVREAS NLVKSGVKELLVIAQDTAAYGQDVKYKLDFIGGRAVKTNIKVLFEELGKLGVWVRPHYMY PYASVDEIVPLMAEGKILPYLDVPFQHAHPRILKAMKRPGSEYNMERINAWRAICPDITI RSTFITGFPGETEEEFQYLLDFLKEARLNRVGCFAYSPVEGAAANDLPGALPESVRVERR ERFMEVQSEISKELLREKVGKTIKVLVDEAPDEDGIATARSTADAPDIDGLVFIENNPNV KPGDFVDVKVTDSSDYDLFAEVVKEP >gi|301349833|gb|ADCQ01000017.1| GENE 95 101420 - 102190 175 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764777|ref|ZP_02171831.1| ribosomal protein L22 [Bacillus selenitireducens MLS10] # 15 234 7 218 225 72 27 1e-11 MGAIKNVTVSRRGEKWDVSIQTEYEVSLPAANPSEIGIDMGVKRFVTMSNGDFVEPLNPF KQEREKLAKLQRKLARQKKGSRNSTKTKRKIARLHRYIADSRRDFLHKTSTKIAKNHSIV YVEDLKVSNMSASAGGTKESPGKNVRQKSGLNRSILDQGWYSFFQMLSYKLERGGGKLIK VNPKNTSRTCPRCGLVSAENRKSQATFACIGCGYRSNADEVGAINVLRAGRAQLACAMSG AVRPLSAGTRRDPLQH Prediction of potential genes in microbial genomes Time: Fri May 13 05:52:18 2011 Seq name: gi|301349832|gb|ADCQ01000018.1| Burkholderiales bacterium 1_1_47 cont1.18, whole genome shotgun sequence Length of sequence - 36557 bp Number of predicted genes - 32, with homology - 31 Number of transcription units - 12, operones - 8 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 286 - 329 8.6 1 1 Op 1 . - CDS 376 - 1434 1466 ## COG3203 Outer membrane protein (porin) 2 1 Op 2 . - CDS 1453 - 3102 2400 ## COG2986 Histidine ammonia-lyase 3 1 Op 3 . - CDS 3145 - 3501 551 ## Sfri_3690 flavocytochrome c (EC:1.3.99.1) 4 1 Op 4 . - CDS 3526 - 5049 2131 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 5120 - 5179 4.3 + Prom 5099 - 5158 4.8 5 2 Tu 1 . + CDS 5213 - 6775 898 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains - Term 6743 - 6791 1.3 6 3 Op 1 22/0.000 - CDS 6806 - 8077 920 ## COG0842 ABC-type multidrug transport system, permease component 7 3 Op 2 9/0.000 - CDS 8067 - 9275 979 ## COG0842 ABC-type multidrug transport system, permease component 8 3 Op 3 13/0.000 - CDS 9285 - 10337 1175 ## COG0845 Membrane-fusion protein 9 3 Op 4 . - CDS 10340 - 11722 1284 ## COG1538 Outer membrane protein - Prom 11759 - 11818 2.5 + Prom 11747 - 11806 4.0 10 4 Op 1 . + CDS 11953 - 12165 91 ## 11 4 Op 2 . + CDS 12158 - 13117 789 ## COG0583 Transcriptional regulator 12 4 Op 3 . + CDS 13178 - 15001 794 ## COG1164 Oligoendopeptidase F 13 5 Op 1 . - CDS 15021 - 16151 1135 ## COG3203 Outer membrane protein (porin) 14 5 Op 2 . - CDS 16170 - 17447 1322 ## COG3069 C4-dicarboxylate transporter - Prom 17570 - 17629 9.4 + Prom 17526 - 17585 5.5 15 6 Tu 1 . + CDS 17708 - 18961 1132 ## COG2195 Di- and tripeptidases + Term 19015 - 19053 6.2 + Prom 19003 - 19062 1.9 16 7 Tu 1 . + CDS 19160 - 19390 177 ## gi|302860554|gb|EFL83631.1| putative toxin-antitoxin system, antitoxin component, Xre family - Term 19435 - 19479 9.0 17 8 Op 1 . - CDS 19508 - 20839 1875 ## COG3069 C4-dicarboxylate transporter 18 8 Op 2 . - CDS 20836 - 22344 1279 ## COG0165 Argininosuccinate lyase - Prom 22516 - 22575 4.3 - Term 22616 - 22654 7.6 19 9 Tu 1 . - CDS 22681 - 23121 430 ## COG3111 Uncharacterized conserved protein - Prom 23183 - 23242 2.7 - Term 23209 - 23246 6.0 20 10 Op 1 . - CDS 23275 - 24132 794 ## COG0560 Phosphoserine phosphatase 21 10 Op 2 . - CDS 24129 - 27602 3087 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 22 10 Op 3 3/0.000 - CDS 27607 - 28572 680 ## COG1573 Uracil-DNA glycosylase 23 10 Op 4 20/0.000 - CDS 28576 - 29028 284 ## PROTEIN SUPPORTED gi|91774768|ref|YP_544524.1| SSU ribosomal protein S18P alanine acetyltransferase 24 10 Op 5 . - CDS 29036 - 29743 670 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 25 10 Op 6 . - CDS 29786 - 30460 281 ## gi|302860563|gb|EFL83640.1| conserved hypothetical protein - Prom 30483 - 30542 3.1 + Prom 30433 - 30492 6.8 26 11 Op 1 40/0.000 + CDS 30601 - 31383 795 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 27 11 Op 2 . + CDS 31408 - 32823 1247 ## COG0642 Signal transduction histidine kinase - Term 32709 - 32743 1.2 28 12 Op 1 19/0.000 - CDS 32820 - 33311 610 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 29 12 Op 2 . - CDS 33304 - 34017 292 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 30 12 Op 3 . - CDS 34076 - 35608 1173 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 31 12 Op 4 . - CDS 35605 - 36231 636 ## COG4566 Response regulator 32 12 Op 5 . - CDS 36237 - 36557 163 ## Pmob_1061 HNH endonuclease Predicted protein(s) >gi|301349832|gb|ADCQ01000018.1| GENE 1 376 - 1434 1466 352 aa, chain - ## HITS:1 COG:RSc3091 KEGG:ns NR:ns ## COG: RSc3091 COG3203 # Protein_GI_number: 17547810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 242 1 234 376 80 33.0 7e-15 MKKSAFFAALLCAVSSGAYAASDVTLYGVVDGAVSVSKVKGQAARVGFDNGIWAGSRFGI KGNEDLGSGYNLGFILEQGFKTFSGDAMNSSKAFARQSTLSLSAPFGTFAAGRTGGLSSD CGTYNILHGSSLWTSYYSTGNIYGTFILSDRMDNVLLYNTPDMNGSTVHFMYSNGMGENG DEQKWSKEDHYYGVGYEYAKGPALFSAMWEMYDHKEHNLKSSQIFTMGGSYDFGSFSLYG AYQFAYRASRLPTYAFANELGPKGANQHGFSASIGVPVAGGTAKLQGNYGFGKIKEGSRD FSMYSIATAYEYPISKRTLFYSFAGYGQGKKAASSIGELNSWTISAGLSHSF >gi|301349832|gb|ADCQ01000018.1| GENE 2 1453 - 3102 2400 549 aa, chain - ## HITS:1 COG:SMa0306 KEGG:ns NR:ns ## COG: SMa0306 COG2986 # Protein_GI_number: 16262618 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Sinorhizobium meliloti # 21 542 25 539 546 401 42.0 1e-111 MRLSIIALLLMSAGIANAGVVTLNGSNLTQDEAWAIAEGKDTVAIAPEAMDRLKKAHELV LLAAKGGTPVYGLTVGVGLNKDKPLFKANGELSEEVIEASKAFNHNALRSHSAAIGPMMS KELTRLQMVIRLNTLLAGQTGAQPYVAELYKEFLNKGITPEIPSRGSVGEADITMSSHVG AVMMGEWRAKVDGKEMSGKEALQKAGLKPLVPEGKDALAILSTNAAAVAETMDAARHART IIDATPRVFALSLEALNGNIAPVLPQVTKVHPFSGLEEEAAKIRDNLKGSYLWEKNKDRA LQDPLSFRTTVYTMREAREALKDLDKEIKVQINSSDDNPATILNAGKDYADHSQVAMYFV EGNGLKGAIIPTSNFEPLPVAMAAQRLGIAMTHLSHNSVQRTIHLSDDHFTGLTRFLSDP ENKGHAFGAIQKPFVAMHADSLAQSNPVSALGTPVAGDIEDTYTNLPLVAERLKRIADNT GYVYSLEMLHSTQGIDLRKKLKGDFKMSEATRKLYQDYRAKVPYVSRDRIYTDNIEDGKQ MIMNGVASK >gi|301349832|gb|ADCQ01000018.1| GENE 3 3145 - 3501 551 118 aa, chain - ## HITS:1 COG:no KEGG:Sfri_3690 NR:ns ## KEGG: Sfri_3690 # Name: not_defined # Def: flavocytochrome c (EC:1.3.99.1) # Organism: S.frigidimarina # Pathway: Citrate cycle (TCA cycle) [PATH:sfr00020]; Oxidative phosphorylation [PATH:sfr00190]; Benzoate degradation via CoA ligation [PATH:sfr00632]; Butanoate metabolism [PATH:sfr00650]; Metabolic pathways [PATH:sfr01100]; Biosynthesis of secondary metabolites [PATH:sfr01110]; Two-component system [PATH:sfr02020] # 9 117 1 104 583 82 36.0 4e-15 MKSLNLLVLAAALFIALPASAQQVKPYHQNIKDCAACHTKENAVAGNQFVTPDNKACLTC HQSYAAVAEKTKNLKNGEPNPHASHHYGEGIACTACHSEHKTSQVYCNNCHEFKYQIK >gi|301349832|gb|ADCQ01000018.1| GENE 4 3526 - 5049 2131 507 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 38 496 39 474 484 200 35.0 5e-51 MKTTPSRRSFLKLAAACTAPAFGSLAFAAPQTQQKFDKVADVIVIGSGFAGLAAALEAKE KGASVMLLEKMPAYGGNSAINGGAFAVAGSPLQEKEGIKDSPELMLQDMIKSGRGLSHVD LLKNIVYGTRPAFDFTVKYGVKYKPFVQHFGGHSVPRIMQTVESTGGGITRPLVEAAKNL GVDMHLGCAVTDLVLNDEGRVIGVKVLERHDYRKENSGVPQVYGARKGVVAATGGFSQNV AFRMQQDPTLGPNLESTNHPGATGEVLQNMLAIGALPIQLDQIQLGPWSSPDERGFGLVS QFNTIAGFPKGIMVNKRTGKRFVNELADRKARSDAILKQLDENGKPVYPICFTDSVGVKQ AQTLKNGLKYGVIKKFDTLGELADAYGIPKEALIKQVEEFNAYVREGKDKQFDRPLALAI EIKKAPFYAARVWPKVHYCMGGVGITKNAEVLNVRTQKPIPGLYAAGEVTGGTHGASRLG GCAIADGLVTGRVAGDAVVANTPVNLE >gi|301349832|gb|ADCQ01000018.1| GENE 5 5213 - 6775 898 520 aa, chain + ## HITS:1 COG:hyfR KEGG:ns NR:ns ## COG: hyfR COG3604 # Protein_GI_number: 16130416 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Escherichia coli K12 # 144 516 285 662 663 246 37.0 7e-65 MKYRESLNIVNKDLQLPAILAINSSINAEESLSRVFEVLQDFLDADGAFVNIFDVQKHSI VFVAHCRRNGLSSPLGSVEPPRSLRPLKITDKVLNCSDISEDRFTQKVLSECLPDVKSYL MLSMDKEDRHLGVVCFYSCRYDQFNEAQRNLLKSLHDSFSLMTSNALNSVLLANNRDLIH ENDGLKDCVRESRMALVNRFTARTPSLKEITAKVEKVSSTEVPMLVLGETGCGKEVVVNL IQQLSKRESGPFVKLNCGAIPETLIDDEFFGHEKGAFTDAKIQKKGVFERACGGTLFLDE IGELSLAAQVRLLRVLQQKVVTRIGGVQSIPVDFRLVAATHRDLKEMVQEGRFRNDLLYR LNLFPLRIPPLRERAEDLFPLTEFFLNRLRSKYGISQPLVLSKKSVEQMLNYKWPGNVRE LENTLERSVLTSSDYQNIRVSFEGEAGGLGPAMSVVSNELIKLETFEAMQKHYFEAVLKA AKGKISGTDGAAALSGMHPNTLRSKLDKLGVTFKAVKPEL >gi|301349832|gb|ADCQ01000018.1| GENE 6 6806 - 8077 920 423 aa, chain - ## HITS:1 COG:VC1609 KEGG:ns NR:ns ## COG: VC1609 COG0842 # Protein_GI_number: 15641617 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Vibrio cholerae # 7 359 28 375 408 120 25.0 4e-27 MNSKFPSLLKCFLFTLKQCTTNLACAPFFCFAIFFYSFYYCWPYMEQLPDHLNVVAVDQD NSALSRRLTQAMRASPSLQVTQQTTSLPEAENLMRKGGISAILIIPPDFEINTLTNVPTA LVLVTNGAFIVKSRGSMSGVGGPLQKIVAASISAHLVEHGVPLSEIARAANNPPSMIVQS MFNTVNGYLNFTVPIVFMIIFQTVFVCGIGMLMNDWFWKKKYPFPLALGARHPMYFLAMY APFFFLSLFWILFIEGQSFSFHGVNSFKNVPGTIVVSMIYAFAITSLGLLIAAFLKRYRF VVQIVVPSSIPFVFISGNLYPWQNIPWPLQAFGWLSPTTAGAFAMLRVSQAGASLSGVAF PYLTHLLLLGATFLTGAYILIYKTQNDPQSLSEMEDLRNGVVDEKLAPELTPKQEKELTG KAV >gi|301349832|gb|ADCQ01000018.1| GENE 7 8067 - 9275 979 402 aa, chain - ## HITS:1 COG:VC1608 KEGG:ns NR:ns ## COG: VC1608 COG0842 # Protein_GI_number: 15641616 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Vibrio cholerae # 22 354 16 348 387 93 25.0 7e-19 MLSPLGWLNAAAAVAVREIQRLLRTPQEIIVCGFLPIFWVLVVWLLLGNGIVTQVPTGIV DNDHSQLSRDVISKIDATRSVGLVPFASHSEADKALRNGTIYGFIEIPFGYSRDVTKGAG APMVLYLDENRYAVAGTLQADLTSVATAISQERMIKTSMLTASGVKGAERLVTGLHSDFY ALGNMQFSFLAFLGSNLVPGVIMLAAILSFVSSIVRENYQYRINDWFDTAKGSVTAALFG KLLPHFFFYSLLIASYIALFAGFGGFAPAGSLFIWFICGAACLAVMACTGVLIVGIAPNW RFALVVTSGYAAPALPFTGFSMPLDSMSEMARMFCKCLPLTWFIEGQTQQWTLGAKIWEM GTTFTAFAILAFIPLVIGIPIFKWKYGKFAKQEKILEAKHEL >gi|301349832|gb|ADCQ01000018.1| GENE 8 9285 - 10337 1175 350 aa, chain - ## HITS:1 COG:VC1607 KEGG:ns NR:ns ## COG: VC1607 COG0845 # Protein_GI_number: 15641615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Vibrio cholerae # 26 346 4 323 324 241 45.0 2e-63 MEENNKPLQPQTTPTSQKQEVKAPKISVILMLVFVLGLTAFIVWGIYKAAFPPAPPLQGQ MESRTISVASKVPGRIHKVLVSEGDFVKANQPVALMSLPELEAKLQQVQAQERAAQAKQS LVDEGARPQEKQAARAQWERAQAAAALALKTYNRISALYKDGLVSKQKYDEVQTQWIAAK QQADAAKQMYDIAEIGARKQEKSAAFDLAEEAKAGVKQVESLTVDKTLNAPLDAQVDKVI LVEGEIAAAGFPVVTLVDLNDQWASFNIREENMPGIEIGKVLHAYVPALGDKKIDYKVYY ISPRANYATWRSTRMDSGYDMKTFEVRARPVEKIDHLRPGMSVLVEGFKN >gi|301349832|gb|ADCQ01000018.1| GENE 9 10340 - 11722 1284 460 aa, chain - ## HITS:1 COG:VC1606 KEGG:ns NR:ns ## COG: VC1606 COG1538 # Protein_GI_number: 15641614 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Vibrio cholerae # 11 447 7 456 476 167 28.0 4e-41 MNKPIQLAFAALALCAAQQCSAALPLSFPVARDWLYERSDKLKASEEQVQSKRETQKSLE TLGGPTVTLQAMQIAGQKKIDIDKSIPNPLAGAPLPIQLPGSFSVGVHEKMSLNGPRVAA TATWPIYTGGKISAMQDASKYAVDEAVAQKRADSEDLDAQLAGYYFGTQLALSVERLQKD MLNHQDQELAKAKKFEKQGMISKIERMSVQVQRDNRNREYLKAKDNAKVARLQLARLLRD EEFGKLTTPLFVLNRPLEPLKYWVDTALASNPQIAVIQAKADQAQQGVKASKGAWMPQVF AFGTYNFVKHYQTLVEPNWIGGVGVNITLWDAKDRRASIRSAEATVRQAEAGKAEAINQV RTGVEVAWLRTQNAINQYKLSASTVKLASENLKLKSKSFDEGLATALDVNEARNQLFAAE VGRRVAAFEFVSNYAMLHAIAGQMSEFMNAVNKHEVIVEN >gi|301349832|gb|ADCQ01000018.1| GENE 10 11953 - 12165 91 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQVSYEVGSSRSEQEISTRKRITFVTCNAFFQITKNASFVLNLHRVLTIFNKQPEDDQNY AYIQLKEQND >gi|301349832|gb|ADCQ01000018.1| GENE 11 12158 - 13117 789 319 aa, chain + ## HITS:1 COG:yhjC KEGG:ns NR:ns ## COG: yhjC COG0583 # Protein_GI_number: 16131393 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 15 295 32 313 323 110 28.0 5e-24 MINSQWKALHLGRWELLFKIMDEGSITRVADIENLQRSQLSRMVSGLEEELGVQLLERRG KRLNPTQVALELRSKIEPHIVMVRRALEKTSELEEGDKGSIRFGAMPGFLQTQVVPLIAE FQQLHPQVTFDVIGDDNPKAFMGGECDLMLYYGPVNDANLVENWVTRSLFVPCASPKYLE KAGYPENPDELSDHAGVVYTGRVRPHSEVLVKNGRQQTFRWKSMIRFNNILLAKTAAVEG CGIVLDMPLHHCFEEVMNGQLIPILNGWQIPNLDNYIGSTLAASKLRRVQMFIDFYVRRR REIEGEQKRRLQEKYNFII >gi|301349832|gb|ADCQ01000018.1| GENE 12 13178 - 15001 794 607 aa, chain + ## HITS:1 COG:BH0871 KEGG:ns NR:ns ## COG: BH0871 COG1164 # Protein_GI_number: 15613434 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Bacillus halodurans # 178 586 180 575 589 103 23.0 7e-22 MKKKLETVQIWSKKGLSDLSGETYFARRRALLNGISMINRLQFFKPEDEVAALQLIEILE QISRLKETLLAACRAAETLSSADSKIAAEKVFILETIDSAEKALQKVKENLQEAAEQKTI LSDKLDRWLQQQKRFKEVKPWLKFPVEALEEERLILGPLFSLYTHLKSSIRTNVTLPDGT VKKSTPSVANFAVKNTSDPELRTLFFNALSACFAINSSMFCDILNAVAGAHLLRASRLGM STLDYALVIEGLDRKSFEAMRSAFSKKLSEIRECLRFAAPYINQGTNRPESPTIPVALLG SALPHLEGPESLKTLDGTLKEITEAVEPYFPEFRDFIELCRQGHWLETHNYSAGSGGAWC VEVPYDKAVAIYVDYQPNINRSFETAHILGDAFFRYSISDLPMQERRLSETRYELIGRLF EELFLRRLVQGASSPQEKAAVLWHGLRRVMINLIEIPFRFRLAEEVFEARKNGYLSVEYI NKLTRKCWSDCYGDTVEGVDQYMWARKPHFYNVYNADSPHHDFQYTVGFLSANMMLKKLE EVEKTEIPRIGKSVLLDNATLPYEEIFTKNFEADIESEEFWTNAIEEALHPLRSIRPYVG ELNRPQR >gi|301349832|gb|ADCQ01000018.1| GENE 13 15021 - 16151 1135 376 aa, chain - ## HITS:1 COG:RSc3091 KEGG:ns NR:ns ## COG: RSc3091 COG3203 # Protein_GI_number: 17547810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 265 1 247 376 84 30.0 4e-16 MKKLTLALLSVLAFGSAAAAQDSVTVYGRIDLGVGISRINDGFGSKENNAQMVTGAGTSN RIGIKGEEDLGSGYKIKFVLENGFDADTGAEATEGLAFSREATLQIVSPFGTLAAGRSSI LGTDGGSFNMLGNVNPFGTGIWELGNQNIVYGKMPASRFDNAFTYRSPEYRGLQLTTEYS MGEEGKENRSTSNHYFGLGVTWKGGPAETVVLFERVNEALTTEKRSPKDMWRITAGGNWK FSAATAYLSLQYFKNADALGTASYSALKDNGIGSITSAQMKKLDGLEGENIILGFSTPVM GGKVLGAVGYIHAKTDELSKKLKADGGFIALGYQYPFSKTTRLYSAIGASAAKYKSGDQS VKPRGFYGTLGLSHYF >gi|301349832|gb|ADCQ01000018.1| GENE 14 16170 - 17447 1322 425 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 425 2 431 432 271 40.0 2e-72 MSFSAWVALAAVIATIYGLIKRYETRLVLLLAGLVMCCCSLDPMAAFEQFDKSMTNRALI ISICSSMGFAACVTLTKCDLHLVSLLTKPLNKLGILLLPCCMLVTGVASLAIGSLAGLCA AIGPTLIALMLRAGFRPAIAAAAIISATLPNYWSPGSTDNILVAQLAGIPVMEQINHISF NILILFGLCIVALTTICFIFGDYKKGGFQQSINEKGLIRPLPELPQHPNLLKAFAPLLPV VLLFVISLWFPKVKMSVATAMLIGFIYVIFVTRSNPAELVKKFFDGMGSGYGSIIGLIIA AGVFAAGLRSCGVVSGFIDFLKDSSEIAKLGGSFGPYILGVMTGSGNAAAFAFCESVVPH AAEFGMKIQDLGFLTCLSATLGRVSSPLAAGVILIAGIAGTSPLEVIKRSAPVSLTAIAF TLLLV >gi|301349832|gb|ADCQ01000018.1| GENE 15 17708 - 18961 1132 417 aa, chain + ## HITS:1 COG:CAC0476 KEGG:ns NR:ns ## COG: CAC0476 COG2195 # Protein_GI_number: 15893767 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Clostridium acetobutylicum # 9 412 4 407 408 377 48.0 1e-104 MSTKKFPNLVSQFLQYVKFETQSCRESQDEPSSPNQLKMAEFLVEELKSYGLEDAHIGKG GVVYASLDAAKGFEDCPAIGLIAHMDTSPDAPAVNIKPQIIQVETGDVLLNPEKQIYFRE NDFPEIKKYVGQEVIFTDGTTLLGADDKAGVAAITACMAYLKDHPEVIHAKICVAFTPDE EIAKGTVNFDIPRFGADYAYTFDGGEIGTLETENFNAATAMVTIKGVVVHPGLSKGKMVN SIKLASRLIGAFPEEQAPETTEGYEGFIHPNKIEGTVAETSVRILIRDHDKEKFEAKKTL LKDLTRKLAEEESRADISLTIKDSYENMRPYLEKTPKVMEIVREAYRQAGIPISEEPIRG GTDGARLSVRGLPCPNVFTGGLNYHSVYECIPIPSLEAAAEVALSLVKLSAEVKTLK >gi|301349832|gb|ADCQ01000018.1| GENE 16 19160 - 19390 177 76 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860554|gb|EFL83631.1| ## NR: gi|302860554|gb|EFL83631.1| putative toxin-antitoxin system, antitoxin component, Xre family [Burkholderiales bacterium 1_1_47] # 1 76 1 76 76 132 100.0 6e-30 MREDSLMTHDQMVAKWMENPEFRKVVFELDAQYAALDKALTKGKPNCLEQANDTRKRTPF HSVLQRPERRAMEDKH >gi|301349832|gb|ADCQ01000018.1| GENE 17 19508 - 20839 1875 443 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 4 440 8 432 432 212 38.0 1e-54 MIWIGLAIVVVTFYLIYKNYEARLVLALSGLVMASIGQVVVGTNGGVSAAVDAFVKQLVN GGLVPTIVTVMGFGYVMTFTKCSDHLVNLLVKPLARVPVIVIPGAVIITWLLNIVLPSAA GIAAAVGVLLIPALIALKVRPVMAAAAVFIGTWGSVVSPGLMFNPQIADLAFKAKEIPAP DAMIVIMQEALPCAIGALVAAICLTIICIVLKEGVGSTEIVKELPEGEEIQKDFKVNPIK AIIPIIPLALLVLASKQVGVLPTKAFSVPVCMLIGTAIGLIVALVNKQKIGDASKKFCRG AGDGFCDVVILIAAAAMFASGMKAIGLTGALVDAMKGSQSVAMFAAAAGPFVMAAISGSG NAAALAFNQAITPNAADFGLTIVQLGAVAQIAAGLGRSMSPVAGGVIILAGIAGVNPMEV VKRTAIPAIVALIVVTLLMFAMS >gi|301349832|gb|ADCQ01000018.1| GENE 18 20836 - 22344 1279 502 aa, chain - ## HITS:1 COG:MJ0791 KEGG:ns NR:ns ## COG: MJ0791 COG0165 # Protein_GI_number: 15668974 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Methanococcus jannaschii # 35 499 40 477 484 171 28.0 4e-42 MTLRVTPWGKDDFKATSEEAESKDWAYWQNRLNRASLVMLAEEGIIDKNIVPRIAAAQKH AEDLQNLPGAPRLTDIMPLEKMLIESCGEEATLIHTGRSRQDMFTTLNEARLRLAVLDFY EALNKLRTKLLSIARENIETYIPAYTNGVQAMPITLAFYLWGFLESFQRDSDRIIESYKR INQSALGVAVLACSSWPLNRERLAELLGFEKPITNGLDAAQISLFDIPLEAASNAANVAI RIGTLVQDLAQQYSQTRPWLLLDSGAAYGSSAMPQKRNPGILNKTRGTASDVVGAMQTSF LRAHNLQLGMYDNKESVLEDCSGVFVKGVEMLELMEQAFSLLKVNPARSLEELNSDWTTT MALAEALQRQFEIPFRIGHTFASQIVTYARARDLHPDNFPFEAAKEIFGNVTEQLEDKRL PFELTQEEFRTVLSPEHAVQSDVGTGSPAPANVRRGLDEIAIRLEEDEQRLRAWRNALAD SDKALDEAFEKLLNNKSQEKKL >gi|301349832|gb|ADCQ01000018.1| GENE 19 22681 - 23121 430 146 aa, chain - ## HITS:1 COG:ECs1244 KEGG:ns NR:ns ## COG: ECs1244 COG3111 # Protein_GI_number: 15830498 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 29 140 1 109 114 88 46.0 4e-18 MYSLREKNLTTPEWKVEAEANTFRETPVVKKVLSAVALASVFAAAPAMAQTGGFTGPGAT QVGTVAQLKTLPDDAHLILKGNIVRNVQGDKYEFKDATGSVELEIDRKYWNGQNVKPENT VKLIVEVDKDLLKTEYEVDAPIEVLK >gi|301349832|gb|ADCQ01000018.1| GENE 20 23275 - 24132 794 285 aa, chain - ## HITS:1 COG:RSc1640 KEGG:ns NR:ns ## COG: RSc1640 COG0560 # Protein_GI_number: 17546359 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Ralstonia solanacearum # 57 284 59 282 285 191 45.0 2e-48 MSHDLVLQTKIGREETLEKFLHTIGKKGTIKDPCAVRLRRVNREEFEARWAQKARALQID ANWIEPGLKLKNFKLFATDMDSTFLNLETLDEMASFVGKGEEVAHITELAMQGKIKNYAE SLTARVKLMAGADASIVDRLIDRHIKPNPGAEKLVAAFKAAGIPMLLVSGGFSCVTEVVK ERYGFTHVISNELEIVDGKLTGRVTGPFGTPIIDGRGKISYVSAYALQHGIELSELITMG DGSNDIPMLEAAGLSIAWHAKPKVRPHAKQAFDFAPLSGVLALFD >gi|301349832|gb|ADCQ01000018.1| GENE 21 24129 - 27602 3087 1157 aa, chain - ## HITS:1 COG:RSc1642 KEGG:ns NR:ns ## COG: RSc1642 COG1197 # Protein_GI_number: 17546361 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Ralstonia solanacearum # 15 1156 22 1156 1157 1332 58.0 0 MKETIFDSLPVIGKSLAVIKPSDKYRENCPAGSALAMSIAQNAVQLKKQNKLLTVICSDP SDVIRLQDEVTWFDPSLKLTVFPDWETLPYDVLSPHADLVGERLQTLYLLLNRQKRQDPV DVLIVSASTATQRLAPRNYIGSTTFFFRKGDRIDPTDLRAELVARGYEHVSQVVAPGEFA SRGGLLDLFPMGSAKPYRLDFFDDELDEIRVFDPDNQRSVEKVDEIRLLPAHEFPMDKEA RSAFCSRWRETFEGDPSKVTLYKDIENGIAAPGVENYLPLFFDETETLFDYIGSDASLIL LGDVNSAIEHFDKETEQRAKFLRADGERPILDFKRLYLSASQFFELAGNYARLSLTDKET ATPNFPSVAIERRKDDSLEGLKAYKDLCSARSRKLLVMANSAGRLETISDVFKENGLKAP LVPGFEKFLESGDNFALCYGPLYDGMELENPPISILTETELYSNSDRPVRRRRRRTERES NIEMMIRDLSELKVGDPVVHLDHGVGRYRGLTSMSTPDGEAEFLQIDYAKEAKLYVPVAQ LHLISRYSGADPETAPLHSLGKGDWEKARKKAALQVRDTAAELLNIYALRQSRKGYAFKF SLADYEAFSEAFAFEETEDQLAAINAVYRDMISDKPMDRLVCGDVGFGKTEVALRAAFMA VMGGKQVAVLCPTTLLAEQHAQTFRDRFANWPVRIAELSRFRSSKEVNASIEGIKNGTID IVVGTHKLLSDKVQFKDLGLVVIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLSM SLEGIRDFSVIATAPQKRLAIKTFVQRESDSLIREAVLRELKRGGQVYFLHNEVETIENA RMRLDQLLPEARIGVAHGQMNERELERVMRDFYAQRTNVLLCTTIIETGIDIPNANTIIM HRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGEGAMTKNAEKRLEAIKEMEELGSGFYL AMHDLEIRGAGEVLGEHQSGSMTGVGFDLYTQMLDSAVTALKEGREPDLLQPLEATTDIN LHAPALLRSDYVPDVHNRLTFYKRLAQVKNKEDLYQIQEEIADRYGKLTQEAKNLILTHR IRVEAKPLGVLKIDAGEDSIIFTFKDKPSFDPGKFFRMLQANRNMRMLGPNRLRLETYSD TAEKRGDNILRILKELK >gi|301349832|gb|ADCQ01000018.1| GENE 22 27607 - 28572 680 321 aa, chain - ## HITS:1 COG:RSc1369 KEGG:ns NR:ns ## COG: RSc1369 COG1573 # Protein_GI_number: 17546088 # Func_class: L Replication, recombination and repair # Function: Uracil-DNA glycosylase # Organism: Ralstonia solanacearum # 130 315 100 281 292 160 49.0 3e-39 MLDQRKSEIWKALGIGPQWIERDELAKAAEEAVKAKAQAAAVSPNSQPQAPTSAAASASS FANRAPQTSEAVTKPVASTSATTPSRVTSSISDRNAPPPRSARPEPAAKPAYRSASEARG VRPEAYTEARIHQIATADWQTLKQLVQDCRACEISSSRLHPVFGQGYPPCRLMLIGEAPG AEEDRLGQPFVGPSGKLLDKILEAAKLDREKDLCIFNTLKCRPPLNATPEKAETMACRPF LERQIELIDPEVIVAMGKPAASWFFPDLKTLNPYRGKVHNLTVQGKPRKVIVTYHPSYLL RSPQEKRKAWLDWCLILDTLS >gi|301349832|gb|ADCQ01000018.1| GENE 23 28576 - 29028 284 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|91774768|ref|YP_544524.1| SSU ribosomal protein S18P alanine acetyltransferase [Methylobacillus flagellatus KT] # 10 146 14 151 153 114 42 1e-24 MAEDLLITRMTSDDIDDVVLLDRSIFYDPWARTSFSGSLKKDTCLILRRDGELEGYAIFS SIFDEGELLRIAVNPLSRRKGYATMLMNELSKLGRERNIEHWFLEVRAGNLGAIKLYEKF GFIMMGRRKGYYAAPNGREDAITMHAYRKK >gi|301349832|gb|ADCQ01000018.1| GENE 24 29036 - 29743 670 235 aa, chain - ## HITS:1 COG:RSc1367 KEGG:ns NR:ns ## COG: RSc1367 COG1214 # Protein_GI_number: 17546086 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Ralstonia solanacearum # 5 229 4 229 243 120 35.0 2e-27 MASALLCLESSGNLCSVAVTGFDREAYLQSEPGQKHTEVILGMIRGCLTAAGGSREGLQG IAFGSGPGAFTGLRVACGLAQGLGWALNIPLIPVNTLLALAYIHHETLEEGSRLLAAIDA RMHECYCAVFRYENHEFKEVTAPALCKPSELLAIADDNGAEFLCGNAFRIYADEIRDPAP KKLLSTDDVNAQMIVPLARKYFEENKTVDAAEASPLYVRDHVALTIEERKAEKSR >gi|301349832|gb|ADCQ01000018.1| GENE 25 29786 - 30460 281 224 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860563|gb|EFL83640.1| ## NR: gi|302860563|gb|EFL83640.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 224 1 224 224 361 100.0 2e-98 MKEIRYLPVVLLLLQPVVGSAHNPEHPSPSETTATVVIDASSAEENSSIPRPHAPNAASN PNVPKCHWDKLDAEGRASVWPTLSARHRDYHWRLMTSEERAELRSFLPKMERRRLRERFV TNHQHARDNDRPYVLYKRLSKQELCELREQVRQANKQLVLSKMLKTPAQIEYEDQFLSKL AEMNDLNHQMVIVTIQESAMESMAAADQKVTPAAQESASARVSP >gi|301349832|gb|ADCQ01000018.1| GENE 26 30601 - 31383 795 260 aa, chain + ## HITS:1 COG:RSc1648 KEGG:ns NR:ns ## COG: RSc1648 COG0745 # Protein_GI_number: 17546367 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Ralstonia solanacearum # 21 253 7 239 240 327 74.0 2e-89 MQESETLRKDGGALSNKRPPRILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWL RERFDAVVLDVMMPGEDGISILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPK PYNPRELLARLHAILRRREPVDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTG EFAVLKTFARHPRVPLSRDKLMEMARGREYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQT VWGLGYVFIPDGASDAQDKK >gi|301349832|gb|ADCQ01000018.1| GENE 27 31408 - 32823 1247 471 aa, chain + ## HITS:1 COG:RSc1647 KEGG:ns NR:ns ## COG: RSc1647 COG0642 # Protein_GI_number: 17546366 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 15 439 17 439 453 300 38.0 4e-81 MADKAGKEGFGSQFFSGLFWKTFGALFILVLTSVCAWLYGLAVLNEAPRAQAASLRITAI TTLTRYALISADTSYRFDLIMALAQREGLTILPKEPYDRIVPLESDSLNDLILDNVRSSL GKKTILAQSLNGIPGLWVSFEIDGDEYWIRAERTAENPRLGANWMFWFAGMLLICALFTV LLTSRLIDPLAKLSEYARELGRGVFPQPLPLDGPSEIREVNESFNVMVSDLKRLASDREL LLAGVSHDLRTPITRLRLEVELAPLSEETREAMCSDLDQMESIVKQFMAYVRQGEAELEV VNISDTVRHVIAANRVASQPDIQLLTSIEDGLEVRANPTDLARAVQNMIVNAGKYGRSSD GILRLSITLRYLKKRGAAELIVADDGKGLPESDLERVLRPFERGDTARGNASGTGLGLSI VNRVAKAGGGSVRLAQNIPNGLSVQMTIPVVPKASVVRKLTEGKETPEKAD >gi|301349832|gb|ADCQ01000018.1| GENE 28 32820 - 33311 610 163 aa, chain - ## HITS:1 COG:RSc1644 KEGG:ns NR:ns ## COG: RSc1644 COG0245 # Protein_GI_number: 17546363 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Ralstonia solanacearum # 1 159 1 159 168 204 67.0 4e-53 MSNCKIRVGQGYDVHRLVEGRPLILGGVQIPHSLGLDGHSDADVLLHAVTDALFGAAAMG DIGRHFPDTDPAYKGADSAKLLSEALKKVWDKGWKPVNVDCTIIAQKPKLAPFMDQINAS LAAILQLPADCVNVKAKTNEKLGFEGKEEGIVAQAVILLEARA >gi|301349832|gb|ADCQ01000018.1| GENE 29 33304 - 34017 292 237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 10 237 4 233 234 117 32 1e-25 MNPDKEEPIFGAVVVAAGVGSRMGTGSPKQYELIGGKTMLERSVQVLLDEPRIKELVVVI SPADMIGQRLTFEDPRVRIARVGGQTRADSVKNGILFSNLKSSDWVLVHDAARPCLLTSD VTKLMDYCRRHQESAILAVPVNDTLKKEGDNGTIACTVSRDGLWAAQTPQCFPVGELARA MNEAGSAVTDEASAMEFVGKHPALVEGTPTNIKVTRPMDLWLARAIFLARKEKENNE >gi|301349832|gb|ADCQ01000018.1| GENE 30 34076 - 35608 1173 510 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 29 480 35 482 484 199 32.0 1e-50 MIRREFLAGLTGLSALAAAPAISFAQTPMNLGQQWDVIVIGSGLAGLSAALSASENGADR ILVIEKLPVLGGHSRLSTGSFLAVSPKRLEPLGIHTSVDAVLEEMMEVGGGIGNKDLARL LLSQSDAAMDWLETHGLVWNPEPYVAVGSPSAYAFRTIQGFTGSHYIFKLNQRARERGVR FLYDQPVTDLLQDPVSGNVNGVVVKSKNHEVIYIRGNAVVIATGGYSANNALCRKFNSEI SALMPSTANPGGRYLDGAWGDALEFTKPFHAATVDLDKIQKICFLGGRLVDYTGADIYLN KNGLRFVNEGASHGDVLVELLKQPQRAMWVITDSQSKKGLSLENKLADGAVKKFDSLRQV AAFIGCPAETLEETVTRYNDFVLKGVDKDFGKKVMLQTISYPPFYVGQERVGVHYCCGGL KFNEKAQVLNTSDEPIAGLYVAGEASGGVHGKDRLGGIGLTDAVVFGRIAGREAALLERA SEHTEFRYVPPRSRSVQELDASADFEPTSD >gi|301349832|gb|ADCQ01000018.1| GENE 31 35605 - 36231 636 208 aa, chain - ## HITS:1 COG:SMa1686 KEGG:ns NR:ns ## COG: SMa1686 COG4566 # Protein_GI_number: 16263379 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Sinorhizobium meliloti # 1 194 1 193 213 126 41.0 3e-29 MNKEHTLIRLVDDDESLLFSTKILLEALGWKVAAYNSPTEFLVRDNLSIPGCAVLDVRMP QMTGLEVQEMLIERGFAHFPLIFLSGHGDIQMAVNAMSKGALTFLEKPIDPERLNQEVTR AVELGIRRAEEVNELNALKRRYRQLTNREKEVLSLVAEGLTNKEIADRLELSVPTIKMHR SRASEKLATDSVAEITRALILLNEATAK >gi|301349832|gb|ADCQ01000018.1| GENE 32 36237 - 36557 163 106 aa, chain - ## HITS:1 COG:no KEGG:Pmob_1061 NR:ns ## KEGG: Pmob_1061 # Name: not_defined # Def: HNH endonuclease # Organism: P.mobilis # Pathway: not_defined # 1 99 334 433 436 109 61.0 2e-23 EQTRRNNRQIHKLSILKGGIRKRNQAPYEIKGFRLFDKVACQGEEGFIFGRRSSGYFDVR KLNGTHISAGISCKKLRLLEKRQTYLTEIRKEKALPPLPEGRGLRA Prediction of potential genes in microbial genomes Time: Fri May 13 05:52:58 2011 Seq name: gi|301349831|gb|ADCQ01000019.1| Burkholderiales bacterium 1_1_47 cont1.19, whole genome shotgun sequence Length of sequence - 6255 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 267 - 1877 969 ## COG0642 Signal transduction histidine kinase - Term 2243 - 2278 4.2 2 2 Tu 1 . - CDS 2298 - 2954 770 ## COG0778 Nitroreductase - Prom 3114 - 3173 6.9 3 3 Op 1 . + CDS 3157 - 4140 641 ## COG0451 Nucleoside-diphosphate-sugar epimerases 4 3 Op 2 . + CDS 4203 - 4988 695 ## COG0428 Predicted divalent heavy-metal cations transporter + Term 5017 - 5063 2.4 - Term 5004 - 5051 5.1 5 4 Op 1 . - CDS 5068 - 5937 962 ## COG2897 Rhodanese-related sulfurtransferase 6 4 Op 2 . - CDS 5943 - 6254 109 ## Pmob_1061 HNH endonuclease Predicted protein(s) >gi|301349831|gb|ADCQ01000019.1| GENE 1 267 - 1877 969 536 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 13 484 87 549 592 101 25.0 4e-21 MLFAPSEIYLQLAAIPQLNAHDIAALKSVFSSKTSASVGSVFITRADRNDINSIADMKGK RVAAANNENLSEWWAALGELKERGYTPNRFFGGERFTRERHLGAVEEVLAGSSDVGILPT CLLEAYEGVGFVAPGSLKVIDPYDNAKDESPFYCRRSTRALYPGIVISSLANAPDDIVKD VVRTLFTMPPFQGNEWAAGYDYTEVLRLMRDLKFGMYENLRDYSLGALLQRYKTELLILL IILLFLICNELRVHHLVNKRTAELKGALEAKNAAEQEAVLGRKRLSHIERSGVISQMSNI IAHELKQPLGALLNYAAVLKLRLNDRMTEDPLTKTVVENMDAETRRISHIVDSVRKFAKK EHPAHIEYDLVRIVEKAIRTFHQQEEAKTAVPFRTDVATAPVLADPLSLELLILNLIRNA AAASKESGRPKLGVSLEPAGKRWKVTVWNNGLVLSDEQFTRLEHAAESTKPEGLGLGLSI VREIADMHSASLHFERLAKGGVRAELMIDRLATKDPEKNSQLSRPNSRGLKKPLVD >gi|301349831|gb|ADCQ01000019.1| GENE 2 2298 - 2954 770 218 aa, chain - ## HITS:1 COG:VCA0637 KEGG:ns NR:ns ## COG: VCA0637 COG0778 # Protein_GI_number: 15601395 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Vibrio cholerae # 1 213 1 217 217 158 39.0 8e-39 MDFVKLSEQRFTAKKFDVNKKIPRDDVEKLKTILQLSPSSVNSQPWVFLWGTSDNSKKRV RPAIADFNWNRIDTCSDFVVIAVRKGLDDKFQHTLLDQEIKDGRIANEEIAKECFESRKF FIDLRERTGQTLNWETKQAYIAMTALLYGAASLGIDSTPIEGFDEDKMDKLLNLDNYGVH SVLVVTLGYDAEDDHNRTRPKSRLEQSKIFFDLDKFPG >gi|301349831|gb|ADCQ01000019.1| GENE 3 3157 - 4140 641 327 aa, chain + ## HITS:1 COG:VC0262 KEGG:ns NR:ns ## COG: VC0262 COG0451 # Protein_GI_number: 15640291 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Vibrio cholerae # 3 324 10 322 323 191 37.0 2e-48 MKKILVTGSNGYIGNALVLALLNRKKEFTVRAAARRGSILNSKSFETVRLGSLEESPDYV EAFKGCDVLIHCASRGSMRGHEGWLDEAALHRINVLGTVHMAREAHRAGISRFIFLSSLQ VNGPETPAGKRFYADSLPRPKSPIGKALLEAEKELIRVGDETGMEIVIVRPPLIYGPDCQ NLFGEVKIMVDYCLPLPLRSCKRNHRSLVGIDNLVDFLICCATHPDAANETFLVSDGEDL STLNIFKLLAKTHHRPCLLWPFPPILVRLFNSYIGRQAWEEFFFQSQVADIHKAQLVLGW TPPLSVEQSFRRSWDENFYLGSHTSSK >gi|301349831|gb|ADCQ01000019.1| GENE 4 4203 - 4988 695 261 aa, chain + ## HITS:1 COG:RSc2227 KEGG:ns NR:ns ## COG: RSc2227 COG0428 # Protein_GI_number: 17546946 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Ralstonia solanacearum # 2 261 5 266 268 169 38.0 6e-42 MTTLLQILAATLLSSVLSIVLAGLISFKFLDRYMSKMLCISAGLLLTVAFTHLLPEAFEI HENAASVGWTLLVSVLFLFCLEFALSHQHHSHVNPPEHTISEYIKGSQKRSSGAGNAILI GDAFHNFTDGILIASAFMVSSGLGWVTALAILAHEIPQEVGDFMVLLHSGFERSKALLWN VISGLTSMLGGIAGYFLLDRVEWMVPYAFAIAAASFIYIALSDLMPEIAHQEKPERFYVQ LFFILIGVAMAVLATGGLHEH >gi|301349831|gb|ADCQ01000019.1| GENE 5 5068 - 5937 962 289 aa, chain - ## HITS:1 COG:RSc2226 KEGG:ns NR:ns ## COG: RSc2226 COG2897 # Protein_GI_number: 17546945 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Ralstonia solanacearum # 3 288 8 293 296 206 40.0 5e-53 MIFTTLIEPRELHTFMLNQKVSGNSNIIILDCSCSIADPELGLKLYVKEHISGAVLVDFD RYVTGKVAHGTGRHPMPDRETFRKSMEYFGIRPDRQVVLYDQGALGFATRFWYELRWLGL ENVCVLDGGFTAWKKEKLPVTDKLTEPLKDGKIPELEPLEVPVPMKTVQDNLKTKEFLEV DARPALRFQGIGETIDHKAGHIPGAVNRPGSENFLPDGRFKPAPVLREEFLKLLDGRTPD KVINSCGSGVNASANLFAMDLSGLYGSKLYVGSWSQWIDDDANPVATGK >gi|301349831|gb|ADCQ01000019.1| GENE 6 5943 - 6254 109 103 aa, chain - ## HITS:1 COG:no KEGG:Pmob_1061 NR:ns ## KEGG: Pmob_1061 # Name: not_defined # Def: HNH endonuclease # Organism: P.mobilis # Pathway: not_defined # 1 96 337 433 436 109 62.0 3e-23 RRNNRQIHKLSILKGGIRKRNQAPYEIKGFRLFDKVACQGEEGFIFGRRSSGYFDVRKLN GTRISAGISCKKLRLLEKRQTYLTEIRKEEALPPLPEGRGLRA Prediction of potential genes in microbial genomes Time: Fri May 13 05:53:59 2011 Seq name: gi|301349830|gb|ADCQ01000020.1| Burkholderiales bacterium 1_1_47 cont1.20, whole genome shotgun sequence Length of sequence - 115983 bp Number of predicted genes - 104, with homology - 99 Number of transcription units - 58, operones - 28 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 349 - 408 2.5 1 1 Op 1 . + CDS 578 - 868 361 ## gi|302860577|gb|EFL83654.1| exodeoxyribonuclease VII, small subunit 2 1 Op 2 13/0.000 + CDS 875 - 1777 779 ## COG0142 Geranylgeranyl pyrophosphate synthase 3 1 Op 3 . + CDS 1791 - 3662 1874 ## COG1154 Deoxyxylulose-5-phosphate synthase 4 1 Op 4 . + CDS 3678 - 4694 844 ## COG0812 UDP-N-acetylmuramate dehydrogenase + Term 4695 - 4749 -0.4 5 2 Op 1 . - CDS 4726 - 5034 352 ## gi|302860581|gb|EFL83658.1| ISPpu13, transposase Orf3 6 2 Op 2 . - CDS 5132 - 5413 221 ## gi|302860582|gb|EFL83659.1| ISPpu13, transposase Orf3 - Prom 5435 - 5494 2.9 - Term 5477 - 5531 5.2 7 3 Op 1 9/0.000 - CDS 5547 - 6464 659 ## COG0078 Ornithine carbamoyltransferase 8 3 Op 2 . - CDS 6473 - 7651 1287 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 7695 - 7754 3.0 - Term 7754 - 7805 8.2 9 4 Op 1 16/0.000 - CDS 7825 - 8460 670 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 10 4 Op 2 . - CDS 8464 - 10671 2730 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 10884 - 10943 8.8 - Term 11015 - 11059 6.0 11 5 Tu 1 . - CDS 11104 - 11367 283 ## PROTEIN SUPPORTED gi|194290625|ref|YP_002006532.1| 30S ribosomal protein S20 - Prom 11497 - 11556 5.8 + Prom 11519 - 11578 4.8 12 6 Tu 1 . + CDS 11625 - 13175 916 ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 + Term 13202 - 13241 5.0 - Term 13185 - 13235 9.4 13 7 Op 1 . - CDS 13242 - 13550 497 ## CAP2UW1_0403 hypothetical protein 14 7 Op 2 . - CDS 13575 - 14105 426 ## COG1247 Sortase and related acyltransferases - Prom 14169 - 14228 4.2 + Prom 14103 - 14162 3.1 15 8 Tu 1 . + CDS 14205 - 15278 765 ## COG0082 Chorismate synthase - Term 15282 - 15314 3.0 16 9 Tu 1 . - CDS 15324 - 16757 730 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 - Prom 16954 - 17013 4.5 + Prom 17057 - 17116 4.4 17 10 Op 1 30/0.000 + CDS 17149 - 18585 1493 ## COG0065 3-isopropylmalate dehydratase large subunit 18 10 Op 2 10/0.000 + CDS 18597 - 19244 724 ## COG0066 3-isopropylmalate dehydratase small subunit 19 10 Op 3 2/0.067 + CDS 19270 - 20340 1400 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 20 10 Op 4 5/0.000 + CDS 20377 - 21507 1590 ## COG0136 Aspartate-semialdehyde dehydrogenase 21 10 Op 5 2/0.067 + CDS 21514 - 22293 645 ## COG0101 Pseudouridylate synthase + Prom 22305 - 22364 2.7 22 11 Op 1 15/0.000 + CDS 22392 - 23264 1006 ## COG0777 Acetyl-CoA carboxylase beta subunit + Term 23274 - 23302 1.0 23 11 Op 2 . + CDS 23307 - 24593 903 ## COG0285 Folylpolyglutamate synthase 24 11 Op 3 . + CDS 24612 - 25820 1131 ## gi|302860600|gb|EFL83677.1| putative sporulation and cell division repeat protein 25 11 Op 4 18/0.000 + CDS 25823 - 26335 371 ## COG1286 Uncharacterized membrane protein, required for colicin V production 26 11 Op 5 . + CDS 26369 - 27868 1895 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase + Term 27894 - 27929 4.1 - Term 27882 - 27917 3.2 27 12 Tu 1 . - CDS 27924 - 29516 491 ## Tmel_0467 hypothetical protein - Term 29784 - 29823 5.1 28 13 Op 1 . - CDS 29859 - 30203 315 ## Glov_1004 hypothetical protein 29 13 Op 2 1/0.267 - CDS 30261 - 31793 1805 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 30 14 Op 1 . - CDS 31933 - 33438 957 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 31 14 Op 2 8/0.000 - CDS 33446 - 34072 335 ## COG4566 Response regulator 32 14 Op 3 . - CDS 34080 - 35825 774 ## COG0642 Signal transduction histidine kinase - Prom 35908 - 35967 2.4 - Term 35904 - 35961 -0.1 33 15 Tu 1 . - CDS 36135 - 36407 266 ## gi|302860609|gb|EFL83686.1| conserved hypothetical protein 34 16 Op 1 27/0.000 + CDS 37084 - 38259 1008 ## COG0845 Membrane-fusion protein 35 16 Op 2 9/0.000 + CDS 38271 - 41774 3006 ## COG0841 Cation/multidrug efflux pump 36 16 Op 3 . + CDS 41771 - 43285 601 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 + Term 43343 - 43380 2.0 - Term 43522 - 43559 0.5 37 17 Op 1 9/0.000 - CDS 43796 - 44716 241 ## COG0583 Transcriptional regulator 38 17 Op 2 . - CDS 44706 - 45629 172 ## COG0583 Transcriptional regulator - Prom 45761 - 45820 3.8 + Prom 45647 - 45706 1.9 39 18 Op 1 2/0.067 + CDS 45732 - 46997 1137 ## COG3069 C4-dicarboxylate transporter 40 18 Op 2 . + CDS 47008 - 48276 923 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 48307 - 48339 5.0 - Term 48294 - 48326 5.0 41 19 Tu 1 . - CDS 48356 - 50161 2087 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 42 20 Tu 1 . + CDS 50479 - 51084 156 ## Cseg_2457 hypothetical protein + Prom 51140 - 51199 3.2 43 21 Tu 1 . + CDS 51358 - 52071 295 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) + Term 52080 - 52120 -0.9 - Term 51879 - 51913 -1.0 44 22 Op 1 . - CDS 52134 - 52322 161 ## gi|302860620|gb|EFL83697.1| conserved hypothetical protein 45 22 Op 2 . - CDS 52408 - 53595 1126 ## COG2951 Membrane-bound lytic murein transglycosylase B - Prom 53633 - 53692 2.0 46 23 Tu 1 . - CDS 53723 - 53842 83 ## 47 24 Tu 1 . - CDS 54011 - 54139 82 ## + Prom 54042 - 54101 3.0 48 25 Op 1 40/0.000 + CDS 54123 - 56372 538 ## COG0642 Signal transduction histidine kinase 49 25 Op 2 . + CDS 56382 - 57089 429 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 57119 - 57178 2.9 50 26 Op 1 . + CDS 57252 - 58535 1889 ## CCV52592_1711 citrate transporter 51 26 Op 2 . + CDS 58593 - 59825 925 ## Dred_0410 hypothetical protein 52 26 Op 3 . + CDS 59848 - 60849 1053 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 60905 - 60954 11.6 + Prom 61021 - 61080 4.0 53 27 Op 1 . + CDS 61103 - 62035 445 ## COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein 54 27 Op 2 . + CDS 62039 - 63319 778 ## COG2270 Permeases of the major facilitator superfamily - Term 63357 - 63398 10.4 55 28 Tu 1 . - CDS 63417 - 65066 2108 ## COG2759 Formyltetrahydrofolate synthetase - Prom 65230 - 65289 4.0 56 29 Tu 1 . + CDS 65101 - 65223 93 ## - Term 65301 - 65336 1.0 57 30 Tu 1 . - CDS 65360 - 66001 752 ## gi|302860630|gb|EFL83707.1| conserved hypothetical protein + Prom 65888 - 65947 3.5 58 31 Tu 1 . + CDS 66155 - 66469 208 ## COG1238 Predicted membrane protein + Prom 66572 - 66631 3.6 59 32 Tu 1 . + CDS 66659 - 67849 1033 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase + Prom 67952 - 68011 3.4 60 33 Op 1 29/0.000 + CDS 68037 - 68789 1001 ## COG2086 Electron transfer flavoprotein, beta subunit 61 33 Op 2 . + CDS 68800 - 69729 1492 ## COG2025 Electron transfer flavoprotein, alpha subunit + Term 69784 - 69824 -0.9 + Prom 69831 - 69890 8.1 62 34 Op 1 12/0.000 + CDS 69916 - 70176 289 ## PROTEIN SUPPORTED gi|119899188|ref|YP_934401.1| 30S ribosomal protein S16 63 34 Op 2 30/0.000 + CDS 70194 - 70718 185 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 64 34 Op 3 33/0.000 + CDS 70727 - 71476 518 ## COG0336 tRNA-(guanine-N1)-methyltransferase 65 34 Op 4 . + CDS 71558 - 71926 491 ## PROTEIN SUPPORTED gi|73542222|ref|YP_296742.1| 50S ribosomal protein L19 + Term 71956 - 71992 5.1 - Term 71994 - 72025 4.1 66 35 Tu 1 . - CDS 72068 - 72586 658 ## azo0597 hypothetical protein - Prom 72815 - 72874 7.4 67 36 Op 1 1/0.267 - CDS 73326 - 74234 631 ## COG1162 Predicted GTPases 68 36 Op 2 . - CDS 74241 - 75506 1110 ## COG0501 Zn-dependent protease with chaperone function - Prom 75531 - 75590 3.2 + Prom 75568 - 75627 5.3 69 37 Op 1 . + CDS 75720 - 76184 355 ## Slit_2810 hypothetical protein + Term 76211 - 76257 8.2 70 37 Op 2 . + CDS 76259 - 76873 609 ## COG1949 Oligoribonuclease (3'->5' exoribonuclease) + Term 76896 - 76938 10.9 - Term 76884 - 76924 11.3 71 38 Op 1 . - CDS 76941 - 77861 1081 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 72 38 Op 2 . - CDS 77861 - 79315 1780 ## COG1794 Aspartate racemase - Prom 79337 - 79396 4.2 - Term 79460 - 79488 -0.0 73 39 Op 1 . - CDS 79506 - 80714 1218 ## COG0628 Predicted permease 74 39 Op 2 . - CDS 80786 - 81178 396 ## COG1733 Predicted transcriptional regulators - Prom 81225 - 81284 5.2 + Prom 81193 - 81252 2.2 75 40 Tu 1 . + CDS 81272 - 84070 2817 ## COG2217 Cation transport ATPase + Term 84094 - 84137 1.1 - Term 83852 - 83887 1.3 76 41 Tu 1 . - CDS 84108 - 85067 615 ## COG0583 Transcriptional regulator - Prom 85120 - 85179 7.8 + Prom 85113 - 85172 6.2 77 42 Op 1 1/0.267 + CDS 85213 - 86703 1122 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 78 42 Op 2 . + CDS 86819 - 88300 1208 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 88311 - 88355 10.3 79 43 Tu 1 . + CDS 88362 - 88757 164 ## TDE1820 hypothetical protein + Term 88920 - 88967 1.8 - Term 88903 - 88959 1.5 80 44 Op 1 . - CDS 88983 - 91013 653 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 81 44 Op 2 . - CDS 91048 - 91671 293 ## Cvib_0691 hypothetical protein - Prom 91712 - 91771 6.5 82 45 Op 1 . - CDS 91884 - 92909 306 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 83 45 Op 2 . - CDS 92975 - 94783 811 ## COG3083 Predicted hydrolase of alkaline phosphatase superfamily 84 45 Op 3 . - CDS 94811 - 95545 102 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 85 45 Op 4 . - CDS 95583 - 96074 258 ## BC1002_0886 glycosyl transferase group 1 86 46 Tu 1 . - CDS 96668 - 97444 -72 ## COG3307 Lipid A core - O-antigen ligase and related enzymes - Prom 97574 - 97633 5.8 - Term 98025 - 98067 9.3 87 47 Tu 1 . - CDS 98082 - 98399 441 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 98438 - 98497 7.0 88 48 Op 1 . - CDS 98563 - 99354 199 ## COG2356 Endonuclease I 89 48 Op 2 13/0.000 - CDS 99399 - 99956 178 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 90 48 Op 3 16/0.000 - CDS 99943 - 100833 350 ## COG1209 dTDP-glucose pyrophosphorylase 91 48 Op 4 . - CDS 100834 - 101895 293 ## COG1088 dTDP-D-glucose 4,6-dehydratase 92 48 Op 5 . - CDS 101895 - 103049 111 ## gi|302860665|gb|EFL83742.1| conserved hypothetical protein - Prom 103099 - 103158 4.0 93 49 Tu 1 . - CDS 103859 - 103981 70 ## + Prom 104540 - 104599 2.9 94 50 Tu 1 . + CDS 104802 - 105323 53 ## COG1835 Predicted acyltransferases + Prom 105465 - 105524 3.7 95 51 Tu 1 . + CDS 105628 - 107445 743 ## COG3083 Predicted hydrolase of alkaline phosphatase superfamily + Term 107686 - 107720 -0.3 96 52 Op 1 . - CDS 107438 - 108280 249 ## COG1091 dTDP-4-dehydrorhamnose reductase 97 52 Op 2 . - CDS 108315 - 109766 771 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Prom 109791 - 109850 4.4 + Prom 109919 - 109978 6.7 98 53 Tu 1 . + CDS 109998 - 111449 924 ## COG1066 Predicted ATP-dependent serine protease + Term 111593 - 111640 1.5 - Term 111439 - 111474 6.1 99 54 Tu 1 . - CDS 111490 - 112194 385 ## COG3152 Predicted membrane protein - Prom 112311 - 112370 2.4 + Prom 112266 - 112325 3.2 100 55 Tu 1 . + CDS 112345 - 113043 524 ## gi|302860672|gb|EFL83749.1| hypothetical protein HMPREF0189_00827 + Term 113185 - 113235 -0.8 - Term 113061 - 113097 5.7 101 56 Tu 1 . - CDS 113124 - 114104 742 ## COG1088 dTDP-D-glucose 4,6-dehydratase 102 57 Tu 1 . - CDS 115132 - 115332 146 ## - Prom 115362 - 115421 2.8 + Prom 115318 - 115377 4.5 103 58 Op 1 . + CDS 115531 - 115722 110 ## gi|302860674|gb|EFL83751.1| putative glycosyl transferase, family 2/glycosyl transferase family 8 104 58 Op 2 . + CDS 115751 - 115982 83 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein Predicted protein(s) >gi|301349830|gb|ADCQ01000020.1| GENE 1 578 - 868 361 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860577|gb|EFL83654.1| ## NR: gi|302860577|gb|EFL83654.1| exodeoxyribonuclease VII, small subunit [Burkholderiales bacterium 1_1_47] # 1 96 1 96 96 139 100.0 7e-32 MGEKAPEISSLSFEEALKELEALSQRLSQGGLPLEESVEAYARGSELRKHCNDLLKRAED RVRELDQKFGNQQDDDEPEETPVSRRSRRNDDDIPF >gi|301349830|gb|ADCQ01000020.1| GENE 2 875 - 1777 779 300 aa, chain + ## HITS:1 COG:NMA2226 KEGG:ns NR:ns ## COG: NMA2226 COG0142 # Protein_GI_number: 15795095 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Neisseria meningitidis Z2491 # 5 300 7 298 298 234 48.0 1e-61 MTVAFKDWVKACQQRVEKAAENNLPQEALIPQKLHSAMRYSVIGGGKRVRPLLVYAVGQI YDADPENLDLTALAVECVHSYSLIHDDLPCMDNDILRHGKPTTHTAFGEAVAMLAGDALQ PEAFLFLVRTKLPAEQRIKLVELLAYASSTRGMCGGQAIDLSVVGNQKMTIEELRLMHSM KTGALLKASVLLGAFAGKKTPSQHDLSQLEVYGNAIGLAFQIVDDILDVVGDTAELGKTA GKDALGDKPTYVSLLGLEKAKELAEEQYLIAAKAVEGLSEDLDGKERLIEIADFIIRRTH >gi|301349830|gb|ADCQ01000020.1| GENE 3 1791 - 3662 1874 623 aa, chain + ## HITS:1 COG:RSc2221 KEGG:ns NR:ns ## COG: RSc2221 COG1154 # Protein_GI_number: 17546940 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Ralstonia solanacearum # 4 619 5 624 636 739 58.0 0 MTTILETINSPADLKKLSMPELKQLANELRTFIIDNVSKTGGHLSSSLGTVELAIAIHYV FDTPEDRLVWDVGHQAYAHKILTGRRDRMSTLRQYKGLSGFPKRSESPYDCFGTGHSSTS ISAILGMAVAAKTLGKKGRSHIAVIGDGAMTAGMVFEALNCAGDMKDLRLLVILNDNDCS ISPPVGALKNHFTQLMSGQFYAQARDIGKAIVRPFPKLFDLTKRAEEYSKGMVAPHSTLF EEFGMNYHGPIDGHDLEVLIPVLQNMKQLNGPLVLHVVTQKGHGYAPAVDNPTKYHGISP FDSSKGIVPSPHAKTYTEVFSDWLVDIARKDPGVIAITPAMKEGSGLVAFAKEFPNRFFD VAIAEQHAATFAAGLAAEGLKPVCTFYSTFSQRAFDQIVHDVAIQDLSVLFPLDRGGLVG ADGATHHGSFDLSFLRCIPNLVIMAPSDENECRQMLYTGYKLDHPAIVRYPRGRGPGVPV DKEMHELPLGKARLVRTGNAPKGARVAMLAFGSMLAEAKAVAEKIDATVYDMRFVKPVDG DAIEEAAKNNDLLVTLEENVIIGGAGDACLEVLAAKGIPADVFQIGIPDRFIQQGDNLHL YQECGMDEESILNKIEERLKRIG >gi|301349830|gb|ADCQ01000020.1| GENE 4 3678 - 4694 844 338 aa, chain + ## HITS:1 COG:RSc2550 KEGG:ns NR:ns ## COG: RSc2550 COG0812 # Protein_GI_number: 17547269 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Ralstonia solanacearum # 13 338 14 342 342 285 44.0 7e-77 MELKTDEHIKKLNTFGVDAKAKNFAEIRSIEDLKQAREHLRQQPQDFMVIGGGSNVLFRE DYPGFLLRMMIPGFEKIREDDEHYFVRAGAGEVWHSFVRKMLDAGMPGLENLAYIPGTVG AAPIQNIGAYGLEAAEFIDSVECFDMDTGEERTLTNEECDFGYRHSTFKKPENRRLVITA VTFKLPKNWVPNTSYKALAEEIEINSFPELSPQDVYSCVISLRRRKLPSPVKFGNAGSFF KNPVVDRETFTSLLRTNPSLVSYPLAGGRFKLSAAWLIDNAGLRGYRMGDVGVWEKQPLV LVNYGQATGEDIYAMAQDVRLRVKNCFGVKLEPEVAMV >gi|301349830|gb|ADCQ01000020.1| GENE 5 4726 - 5034 352 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860581|gb|EFL83658.1| ## NR: gi|302860581|gb|EFL83658.1| ISPpu13, transposase Orf3 [Burkholderiales bacterium 1_1_47] # 1 102 1 102 102 186 100.0 3e-46 MSRELEEIVLEKTERDKLIDELTLALLYLTSFTEEGKPDVRMSWKSHDWTAMDRLVDDGF IEKPKCMRKHSRVLTNEGIEKAKELLDHVGPSLGFNKKDWTN >gi|301349830|gb|ADCQ01000020.1| GENE 6 5132 - 5413 221 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860582|gb|EFL83659.1| ## NR: gi|302860582|gb|EFL83659.1| ISPpu13, transposase Orf3 [Burkholderiales bacterium 1_1_47] # 1 93 1 93 93 160 100.0 3e-38 MERSQRERLTEELTLVLLYLTSFTEKQCPNVRMAWKTHDWTALDDLAEDGFMVPPHNRKN YTRYLTDEGVEKAKELLEQIGPSLGFKKEDWGD >gi|301349830|gb|ADCQ01000020.1| GENE 7 5547 - 6464 659 305 aa, chain - ## HITS:1 COG:RSc2554 KEGG:ns NR:ns ## COG: RSc2554 COG0078 # Protein_GI_number: 17547273 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Ralstonia solanacearum # 3 301 8 307 308 357 56.0 1e-98 MHKNFLCLKDCSADELNYLLRRAIKLKSRFKAGEVYRPFEGKVLAMLFEKASTRTRVSFE AGMAQLGGTSIYLNTSETQLKNEETIEDTARAVSRMVDLVMIRTGPHSRLEAFAKESEVP VINGLTNDSHPCQVMGDIMSFIEKRGSIKGAVVTWIGDANNVLYSWLYSASILGFKVHIS APPGYSINPTQVPDNDDCYDFFLSPEEAAEGADLVTTDNWRSCGYDENQAKRQSKSARWQ VNETVMKAAKPDALFMHCLPAFRGQEVSSEVIDGPQSVVWDEAENRLHFQKALMEYLLLG RIEDV >gi|301349830|gb|ADCQ01000020.1| GENE 8 6473 - 7651 1287 392 aa, chain - ## HITS:1 COG:slr1022 KEGG:ns NR:ns ## COG: slr1022 COG4992 # Protein_GI_number: 16329751 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Synechocystis # 2 387 33 429 429 349 44.0 7e-96 MSHLMNNYGRLPVSFDHGQGVWLWDKEGHKYLDALAGIAVNSVGHAHPRLVRAIADQASK LIHCSNYFNIDLQEKVAEKLVEHSGLEAVFFCNSGLEANECAIKIARKFGHTKGIEVPNI IVLKHAFHGRSIATLSATGNPSVREDFSPYTEGFIFVDESDLNGIRKIVEENKNVVAIFF EPILGEGGVVPIDLSVIKGIREICDEHDLLMMCDEVQCGMGRSGKWFAHQWAEIKPDVIT MAKGLAGGVPVGAVIVSEKANIFKPGNHGSTFGGNPLAMRAALETLSIIEDEKLVENALE VGKKLKKALSKSLNGFPGVRGIRGKGLMLGIVLDRDAHDILELGLKAGLTFSVTAGNVIR LVPALTITEAEADELVKRITPVIRSFLAQPKI >gi|301349830|gb|ADCQ01000020.1| GENE 9 7825 - 8460 670 211 aa, chain - ## HITS:1 COG:APE2605 KEGG:ns NR:ns ## COG: APE2605 COG0437 # Protein_GI_number: 14602171 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Aeropyrum pernix # 3 196 70 241 250 114 36.0 2e-25 MSQFGIIVNVDKCIGCQACFVACKEENKVAPGIQWNQIHRAENLQDRIINYFRVSCQHCD NPACLPVCPAKAIYKGPHGEVLVDQSKCISCGACAMACPYGAPKFNRSGKTSYWDGPALA SVPLQPHQQRTPGKAERCTLCVQRTSNGQVPKCVEACAVKALTFVDYDNLTPEQKALVDK SVALNEAAGTKPKVRYIASHMDIAGRQEKMF >gi|301349830|gb|ADCQ01000020.1| GENE 10 8464 - 10671 2730 735 aa, chain - ## HITS:1 COG:AF1203 KEGG:ns NR:ns ## COG: AF1203 COG0243 # Protein_GI_number: 11498802 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Archaeoglobus fulgidus # 7 701 15 693 741 217 29.0 6e-56 MDKTQGLKVTRRSILKTIPALSAISAGSSFFTKAACAQEPLEDGYTICDNCNQMPMCGIH FHRQGNTVVSVGNWKEHSGKLLCNKALATLQRLYNPNRLLYPMKRTNPKGSVDPGFVRIS WQEALATIAANMKKIRDQYGAEKLFIFCGDPKEPRPAAMRLARYFGTYHYGTESSVACRK GSLLAEQLVFGCEYAGGGCGPKTKSFMVMATNGAWSKPHGWWNMISAAKQRGVNIIVIDA RRTKVAELATIHLQPKQGTDAALGAGICRVLFEEGLYNKPFCDKWVYGVEEYRNYCKDFT PEKTEAITGVPADLIVKAARMYAEGPGSFALTSQSLSHSRNGVNSARALLNIPAILGYVD IPGGALFGVGPKGYIVHDNGLTEDFVDYNWFKAHKKDRLDKDFVPVWNHTQVQFNPNQLP EHVKNGKLRGMVAFGFNVMIWPQPQVYAEAIKNMDFSCATDYFYRDETHHDMDIILPAAM NYERYAPFGTHAGNKVSVRTPVKPMGEAKEDWWIALQLGCLVDDPKHFFDGDPVKACDSI LKEWGTTYADAQKNLPNMTQVQGAKQQPLKYEKGLLRHDGQPGFDTPSGKIELSSNITKM HNLGTIPIYVEPYQPTAEYPIKLINGTRAPYITHSKTRSDSPYLLEIEPMSTVDINPEDA KARGINEGDKVLIKNQYGQARARARVSIIVPPGTAGMQYGWRGDQNTQVLIPREWDKLSG YAPYFETTVQITKEA >gi|301349830|gb|ADCQ01000020.1| GENE 11 11104 - 11367 283 87 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|194290625|ref|YP_002006532.1| 30S ribosomal protein S20 [Cupriavidus taiwanensis] # 1 87 1 87 88 113 70 4e-24 MANSKQARKRAIQAVARNKHLSAQRSRYRTAIKNVRKAILAGDKAAAQTLYVTAQSVIDS MADKGVLHKNAAARHKSRLVVAIKAMA >gi|301349830|gb|ADCQ01000020.1| GENE 12 11625 - 13175 916 516 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 3 498 5 514 524 357 38 1e-97 MSIFRNAAVISAMTLLSRITGLIRDILIARVFGVSGDTDAYYVAFRLPNLLRRLFAEGAF QQAFVPMLADVKSNRSAEETKSFIDKVASLLGFIVLCVSILGVIAAPILVFVIASGLVEE PATFDTATRLTRYMFPYIFFMSLVALSSSVLNTWKHFAIPAAVPILLNLSLITATLFVAP LFDQPIYALAVGVMAGGFLQLAVQIPQLAKLHLLPRFVNPFKAMKDPSVRRVLKLMVPAL FAVGVAQISILINTNIASFLAEGSVTWLAYADRLMEFPTALLGVALGTVLLPSLSAAFAK GMTDRYNALLDWGLKLVVAFAVPAAIGLALLGEGLVSVLFQSSRFNVNDVYQTATAVMGY SIGLIGLIGIKILAPGFYAQKDIKTPVKVACAALIVTQIFNLVNVPLFSHAGLALSVGLG ACFNACCLLIILRRRGVFTPLAGWKKLFLTVILGSVLLTAYLLVIQHYCDWTQMAYPWAV KLGLVLGVVAGAAVLYIGTLAVCGYRLSDLKASEVD >gi|301349830|gb|ADCQ01000020.1| GENE 13 13242 - 13550 497 102 aa, chain - ## HITS:1 COG:no KEGG:CAP2UW1_0403 NR:ns ## KEGG: CAP2UW1_0403 # Name: not_defined # Def: hypothetical protein # Organism: A.phosphatis # Pathway: not_defined # 9 84 2 77 77 66 51.0 2e-10 MSEEQLEYDPEWTLATLNDAKEALEDLIAQVEDSPEEVKEILEENIANVYAKLNYAFNSA KDGPDALLSMPDDELVAFPSVLPLKHKVEFEEKDEEKPDEVQ >gi|301349830|gb|ADCQ01000020.1| GENE 14 13575 - 14105 426 176 aa, chain - ## HITS:1 COG:RSp0397 KEGG:ns NR:ns ## COG: RSp0397 COG1247 # Protein_GI_number: 17548618 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Ralstonia solanacearum # 6 168 20 183 183 185 57.0 3e-47 MEKLFVNIRKAEPADIGGIASIYEQAVLLGTASFEVTPPSEEEMLSRMQTIEAGHYPYLV AELEHQILGFAYAGQYRPRKAYRYTVEDSIYVHPECRRLGVGTQLLTSLIAECDLRGFRE MIAVIGDSENTASIKLHEHCGFRHVGVLKNVGYKFDRWLDSVLMQRTLAGGDTMNC >gi|301349830|gb|ADCQ01000020.1| GENE 15 14205 - 15278 765 357 aa, chain + ## HITS:1 COG:RSc1566 KEGG:ns NR:ns ## COG: RSc1566 COG0082 # Protein_GI_number: 17546285 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Ralstonia solanacearum # 1 357 1 354 366 426 64.0 1e-119 MPGSRLGEYFSVINFGESHGPAIGCVIDGCPPGMELSQEDIQKELDRRRPGTSRHVTQRK ESDTVEILSGVYQGKTTGTPIALLIRNEDQRSKDYSAIENLFRPAHADYTYYKKFGIRDP RGGGRSSARLTAPTVAAGAVAKKWLEENLNIKIRACLVNLGGIPLEVKDWTAVDNNPFFT ADLEKVPELEAFMDELRRAGDSAGSEIYVEVQGVPPGVGEPIYRRLDACLAYAFMGLNAV KGVEIGDGFEVVGSRGSLNADRMGTQYENGFASNHAGGILGGISTGAPITARVAIKPTPS IRQEMPTLTVDGKDTIVSTKGRHDPCVGIRATPILEALTALVLIDQVMAQRAQCGSI >gi|301349830|gb|ADCQ01000020.1| GENE 16 15324 - 16757 730 477 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 6 439 5 440 456 285 36 5e-76 MDWFASIVSSLNNVLWSYVLIGLLICVGLWFTFCTRFVQITNVREMFRCVLEGSRTPRPE GHISPFQAFCISTASRVGVGNIAGIAIAVVTGGPGAIFWMWVIATLGAASGFIESTLAQI YKVKKPGGGFMGGPAYYIKNALGSPFWAGVFAVLISVTYALIFNSVQANTISLSIETTTG LKPAYTGLILAIVTGLVIFGGMTRIAKVASFMVPFMAGAYLLLAFVVTCMNITEVPRVLL MIVTKAFSFDSITGAAIGVALMTGIKRGLFSNEAGMGAVPNAAAAADASHPVRQGLIQAM GVYFDTLFVCTASAMLVLLSPEWMMGSKLTGIALVQKSVAGQLGEWTNFFMTVIVLFFAF SSIIGNYFYGEMNMPFISKSKYAMPIFRVFVVVMVFVGSIASLSLVWDLADLFMALMAIV NLVAIFMLGKYAIAALRDYSAQKRRGILDPIFDPRILPDKKGVQCWPRDEDPRRKVN >gi|301349830|gb|ADCQ01000020.1| GENE 17 17149 - 18585 1493 478 aa, chain + ## HITS:1 COG:NMA1450 KEGG:ns NR:ns ## COG: NMA1450 COG0065 # Protein_GI_number: 15794355 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Neisseria meningitidis Z2491 # 6 477 2 468 469 646 68.0 0 MRTPESPKTLYDKIFDEHVVRMEEDGTATLYIDRHLVHEVTSAQAFEGLRMNNRPLWRKS SIVATADHNTPTTGWEAGMEGITDPISKLQVTTLDENIRQNGCAAFFPFLSRGQGVIHVM GPEEGATLPGMTVVCGDSHTSTHGACAAIAFGIGTSEVEHVMATQTLLTKKMKNMRVHVE GKLQPGVFAKDLALYIIGKIGTAGGTGCAIEFDGPAIRALSMEGRMTLCNMAIEAGARCG LVACDDKTIEYMKGRPLAPEGELLDQAIEYWKTLHSDEGAKFSIEVNLQAEDVVPMVTWG TSPEMVAPITGCTPIPEDQKDPVKREGWERAYQYMDLKLGTPMTSIAPNNVFIGSCTNGR IEDIRAAAYVVRKLGKKVAPTVKQALVVPGSGLVREQAEDEGLDKIFIEAGFQWRRPGCS MCLAMNADRLEPGDRCASTSNRNFEGRQGNKSRTHLCSPAMAAAAAIEGHFVDVRKLF >gi|301349830|gb|ADCQ01000020.1| GENE 18 18597 - 19244 724 215 aa, chain + ## HITS:1 COG:RSc1989 KEGG:ns NR:ns ## COG: RSc1989 COG0066 # Protein_GI_number: 17546708 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Ralstonia solanacearum # 1 214 1 214 216 328 70.0 7e-90 MEKFTVLQGIVAPLDRSNVDTDAIIPKQFLKSIYRTGYGPNLFDEWRYLDKGEPGMDPAT RKINPDFVLNQPRYQGSTILLARKNFGCGSSREHAAWALTQYGFRVVIAPSFADIFYNNA FKNGLLPISLPEFVVDYLFDEIKANNGYQLSVDLVNRVVIEPNGKRHEFEVPEFRRYCLL NGLDDIGITLQHADEIKAFEQQRLNQKPWLAKTIY >gi|301349830|gb|ADCQ01000020.1| GENE 19 19270 - 20340 1400 356 aa, chain + ## HITS:1 COG:RSc1988 KEGG:ns NR:ns ## COG: RSc1988 COG0473 # Protein_GI_number: 17546707 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Ralstonia solanacearum # 1 356 8 363 363 508 73.0 1e-144 MKKIAVLAGDGIGPEIMAQALKVLTALKLPLEFEEALVGGVAYAAFGHPLPAEVVELAKK SDAVLFGAVGDFKYDNLPRYLRPEQAILGLRKALGLFVNLRPAICYPELTAASSLKPELV SGLDLLLVRELTGDVYFGQPRGKRISPDGVFAGTEEGFDTMRYAVPEVERIAHVAFKAAM GRSKHLVSVDKANVLETSQVWRDTMIKVSKEYPEVTLEHMYVDNAAMQLVKAPKKIDVMV TGNLFGDILSDEAAMLTGSIGMLASAALNEKGQGLFEPSHGSAPDIAGQNIANPLAQILS AAMMLRYSLGMEEAAVRIENAVKKVLAQGYRTGDIRSEGCKLLSCSEMGDAVVAAL >gi|301349830|gb|ADCQ01000020.1| GENE 20 20377 - 21507 1590 376 aa, chain + ## HITS:1 COG:NMA0351 KEGG:ns NR:ns ## COG: NMA0351 COG0136 # Protein_GI_number: 15793362 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Neisseria meningitidis Z2491 # 2 372 1 368 371 516 67.0 1e-146 MLKLGMVGWRGMVGSVLMDRMKQEDDFKFVSTTFFSTSNAGGKAPEVPNSDPILKDADDL DALAACDVVISCQGGDWTKAHFKPLRDKGWNGYWIDAASTLRMEKDAIIVLDPVNMDVIQ KGLREGVKNYIGGNCTVSLMLMALDGLIRADLVEWISSMTYQAASGAGAPNMRELLEQMG ALYGVVAEDLKDPRSAILAIDRKVTEELRSTDFPDKAFGVPLAGSLIPWIDKEVEHGQSR EEWKGGAEANKILGKPAIGEPGCMPVDGLCVRVGSMRCHSQALTIKLKKDVSCEEIERLL AEANQWVKVIPNRKEDSIHELTPAKVSGTLSVPIGRIHKLNFGPEYVTAFTVGDQLLWGA AEPLRRMLRILVDFKA >gi|301349830|gb|ADCQ01000020.1| GENE 21 21514 - 22293 645 259 aa, chain + ## HITS:1 COG:RSc1985 KEGG:ns NR:ns ## COG: RSc1985 COG0101 # Protein_GI_number: 17546704 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Ralstonia solanacearum # 2 255 3 260 274 291 55.0 9e-79 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV IHLDTGADRKEISWVRGLNSYLPTECAVRWAKVVPDEFHARFSACSRTYEYWIVNEPVRS PILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLGRF IKIRVKANAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYLTG VGYPEIFGLPQHGASPFPG >gi|301349830|gb|ADCQ01000020.1| GENE 22 22392 - 23264 1006 290 aa, chain + ## HITS:1 COG:RSc1980 KEGG:ns NR:ns ## COG: RSc1980 COG0777 # Protein_GI_number: 17546699 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Ralstonia solanacearum # 1 289 1 289 290 399 66.0 1e-111 MSWLDKVLPKISRSNGETAKKDIPAGVWTKCSNCGTTLYAQELRDNLNVCPKCNHHMRVS ARQRLDMILDPENRQEIGAEIRPVDPLGFVDSKKYPDRVKQAQSASGETDALVVQSGTIH AMPAVVAVFEFGFMAGSMGSVVGERFARAVQAAIDNQAAFVCFTASGGARMQEGLFSLMQ MAKTTGVIAKLAEHKLPFISVLTDPTMGGVSASFAFMGDVVMAEPKALIGFAGPRVIEQT VREQLPEGFQRSEFLLQKGAIDMIVDRKNLKMEIAKLIALFQKESLDAIE >gi|301349830|gb|ADCQ01000020.1| GENE 23 23307 - 24593 903 428 aa, chain + ## HITS:1 COG:NMB0693 KEGG:ns NR:ns ## COG: NMB0693 COG0285 # Protein_GI_number: 15676591 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Neisseria meningitidis MC58 # 4 421 2 424 424 358 43.0 1e-98 MKFETLDAWLHHIEGLHAQAIDLGLDRMETMLKRLDIRFKCPVFTVGGTNGKGSTCAFIE SALLAGGYSVGVHTSPHLIRFNERVRINGKDAKDEELIRQFEKVEAARGEMTLSYFEYTL LGILLLFAEKDLDAVVLEIGLGGRLDAVNTVEPSVSVITSIGIDHTAYLGTTRESIGWEK AHIYRSGKPAICADANPPITVEQYADKIGAELLVIGKNFRFEHNHSDKTWNFYGSRGELR NLPLPTMSGEHQLNNASGAFEALQCMQGKLPLKREAFESALLNTRITGRFSKVRNAPEVY LDVGHNPHAAKELAKTLSELPKATRQVAVFGMLSDKDRPQVCRIMVSSFNKWYLSDLQGP RGGIAQDLCAMLSEAGVPQEKIQTFKTVEEALQRAIEEAHETDRIVTFGSFLTVASAIEY LKEKVGRN >gi|301349830|gb|ADCQ01000020.1| GENE 24 24612 - 25820 1131 402 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860600|gb|EFL83677.1| ## NR: gi|302860600|gb|EFL83677.1| putative sporulation and cell division repeat protein [Burkholderiales bacterium 1_1_47] # 1 402 1 402 402 484 100.0 1e-135 MPFWKKKEPEVPLPHVEPGMSAPQSSEPNPIRFSDEPQFGTVHPSQTAVPPTRVRQPSDG EFATHPSAIQTPVTSSQKESFATVRPTPAPAQEMPLHIEENPFASAPAAKESPTEVKLDL ETASHAAPNVESEPAAPQPEKRSWFKCAPKKDEQQLEEEELRRQKWIHARRRFVGTLMLL MAAAIAIPILFDKEAPPPAVTIPLRIPKENSVDVTKITVPPAPAPEEGEEPKEAPKVPPV PSVNSGKGQAAAVALSASGNTAGKAPEAKNDTAEAAKKAAEAKKAAEEKKAAEAKKLAEA KKQAEAKKQAEEKKAQETSAPKLTKGQYFIQVIALSNQNRAQGIVDKMKKAGVPAYLSPI QAKSGRIYRVQAGPFKSAKEAEAANAKLGLAGLNTGKVQSVR >gi|301349830|gb|ADCQ01000020.1| GENE 25 25823 - 26335 371 170 aa, chain + ## HITS:1 COG:YPO2771 KEGG:ns NR:ns ## COG: YPO2771 COG1286 # Protein_GI_number: 16122975 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Yersinia pestis # 11 161 4 152 169 75 33.0 4e-14 MDFSSLGLGELDWVFVVIILLSTLLGVSRGMVREIFALVGWVAAFFVSLYCSADLAAILP FQAHMGLMTRTFVSIVLIVIGCVFLAGLVGKILRSILASVSIGAEDRLLGCLFGFLRGLL IVGLLVFLGGTTEFFSKQLWWKDSALVPAFEKGITWCAPYIPDSLMELRK >gi|301349830|gb|ADCQ01000020.1| GENE 26 26369 - 27868 1895 499 aa, chain + ## HITS:1 COG:RSc1976 KEGG:ns NR:ns ## COG: RSc1976 COG0034 # Protein_GI_number: 17546695 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Ralstonia solanacearum # 1 485 1 481 511 654 67.0 0 MCGIVALYASGPVNQRLYDALLLLQHRGQDAAGICTVEGRHFHMHKGMGLVRDVFRTRNM RDLPGNCGIGQVRYPTQGNATAADESQPFYVNAPFGIVLAHNGNLTNAEELAQELYELDR RHINTTSDSEVLLNVFANELALATQGHPLDEEALFKAVSGVHKRVKGSYAVVCMIAGHGV VAFRDPYGIRPLCYGTTLGEDGKSEYMIASESVTLEGSEFQILGDVHPGEAIWIDENGDL HKKQCAEHPVYSPCIFEYVYLARPDSQLDGISVYEARLRLGENLAKEIKKSIPLEDIDVV MPIPDSSRPAAAQLAKALNLPYREGFIKNRYVGRTFIMPGQAVRKKSVRQKLNAMAIEFK DKNVLLVDDSIVRGTTIKEIVRMARQSGAKKVFIASGAPPVRYPNVYGIDMPTTAELIAG DNRPTEQIRIEIGADALVYQTIEGMKEAVGGLNPEIKRFDCSCFDGDYVTGDITPQYIAE LEKKRLEAKAEAKKAASDD >gi|301349830|gb|ADCQ01000020.1| GENE 27 27924 - 29516 491 530 aa, chain - ## HITS:1 COG:no KEGG:Tmel_0467 NR:ns ## KEGG: Tmel_0467 # Name: not_defined # Def: hypothetical protein # Organism: T.melanesiensis # Pathway: not_defined # 8 526 3 507 514 248 32.0 4e-64 MESKIFSQLPLGVSDFHKLRELEKIYVDKTNLLYELITTFEKVFLARPRRFGKSLLVSTF ESLFKHGTRDFKGLAIEKLWNDKTYKVIRLDFSNLKDFSTEEEFSILLDEYFAILMAQNE ITVSKEPNFGGFSSFIYWLGLQPSNSVVVLIDEYDAPLTVCMNNPELFDFVRKKLSRLYA SFKNYEGVIRFLFLTGITKFNKTSIFSELNTLTDISLSPRYGSLLGYTHEEVVEYFKNYL DRSAKALGIESDQLLDKLVSQYDGFCFEETVSKKVFAPWSLLSFFAEPERGFKNYWFESG GRPYALLEYLKSHALRHPEEYGKLKSIALTELTSSSDIKTLSDVALLTQAGYLTLKNIVG TTAYVGYPNEEVKTSMAQLYTERLLAGHTVEQVGADNIAHRLASENIEDIFHLLNKLFGS IDYQKYPIRDEASVRAFVQVFFSGAGLNPIVEHHNAKGRSDLEVKVGVRYWVFEFKVCNS ENDGKELLKEAILQLQRKEYGLQELEEQILRVALVFSLEKRKFIEFSQCD >gi|301349830|gb|ADCQ01000020.1| GENE 28 29859 - 30203 315 114 aa, chain - ## HITS:1 COG:no KEGG:Glov_1004 NR:ns ## KEGG: Glov_1004 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 27 114 77 165 165 99 51.0 4e-20 MIRSVLTLILTFGCILSLPSYAAGNFGADRHVARGVQCQQCHGANNEVKDPDKTQCIVCH DPNAVAAKTANVKPQNPHVSPHYGKDLDCVLCHVQHGQTENYCEQCHNFGFKVP >gi|301349830|gb|ADCQ01000020.1| GENE 29 30261 - 31793 1805 510 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 41 508 39 477 484 169 31.0 2e-41 MKNIQFSRRNLLGASVAALASSAFAAKASANPAPVPQKWDEEVDVIVVGSGFAGLAAAYE AAKAGSKVIILEKMPTHGGNSIINGGEMTAVGCPQQKAANIPDSVEQWKADTFAAGLGFN YPEKIQVLADNMLNNYNWLVNEIGVKFRPIITQDGGHRYPRSVISEEGSGAGFVNAELAK CKELGAQLRTRNYVERIIRDPETGRVLGLQVRKGYRFPNPQSGTVQLIKANKGVVLCHGG FGADIAYRQVQDPKLTDKFDTTNHRGATGELWKEAARNGVLMIQADRVQVVPWCSPYEKS MGNMWQFSQTCAAPYGIWVDVNTGKRFINELGNRKVRSDAIIALNNIGHKCISLTDVRGA KQLEKNRPGTLPKLMATKGLLEFPTLEAVAKYYGTPYDVLKGEVDQYNANVRNKIEVDSL GKTYNADCTEMKTGPWYAAELMPKIHHCMGGIVTNPQGQALDAGDLKPIPGLYAAGEACG GVHGDCRLGCNAILDCLVNGRIAGQSVAKQ >gi|301349830|gb|ADCQ01000020.1| GENE 30 31933 - 33438 957 501 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 20 487 32 473 484 184 31.0 5e-46 MFHRRDLLKFLLFGTCCPTTHAEENPKWDLTVDAIVVGSGAAGLAAAATLAEGGLSVLML EKMNSLGGNTVISGGDVAVPGSPVQLKMGIKDSPQMMAEDLIRAGKTVDKERVRFLAQNA LSTWKWTQEKWGTRWNPDKLQFDEGQSVPRGLLSIPRSGFALFSSGIEYARNLKVQIRNN SLVEDIFFGPNGEAQGLLVRTRYKFPDPASGTQIKIRARRAIVLCFGGFGADEEFREMVN PSMGKLLATTNQPGATAESIRMAMRLGIKTVDLDQIQALSWISADEIGLGDAWPFIEQYS AFYGIWVNNKGKRFVNERGSQRLRSERLLEEIKNGHRIFGITTQNAIEHQPDDLQATEEL KLRGIIRSFPSLEALAVNSSISYTELVKTVEKYNTCVNNAVIDEFQRNLSNTFPLNGTNW FVVEIRPKVHHCMGGIKTTLSMQVLNNKNQIIPNLYAAGEATGGIFGRSRIPCHSLIDAL VGGRAAGLHILENTHSKNEND >gi|301349830|gb|ADCQ01000020.1| GENE 31 33446 - 34072 335 208 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 9 195 17 202 210 128 41.0 9e-30 MFDSLIIRVVDDDESIRTTLKEVLEQNGWNCVTYCSAEEMLREDAISVPGCIVLDLKMEG MSGLELQTELNKRGSRLPIIFFSGHGDVDSAVLAMKHGAVNFLRKATGVSELLKAVSSTL GTDGQADQLFKNYTPGELVSFYENLTPQEKEVAFLVAEGFLKSDIARKLGVSSKTVRNYK VHIRQKLQLNTPAEISLFMQKIRSILKD >gi|301349830|gb|ADCQ01000020.1| GENE 32 34080 - 35825 774 581 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 18 542 51 558 592 95 21.0 3e-19 MSHPWSASRFLEQSLNYLNWKIPTYSFQAKWISVDDIEKAFDEGKLDLAVFPSGYLIDEK TRQHRLLMTMVSREAPDPDAGTACAVIVKRSSPIKSLSELSNVPIASANKHSVQGFLACL RELEKLGTDTDKLTKDHVYFLGDLNEKNVIREVTEGRASAGFIRAGLIEDIKKANAANVL EDIRVLSGPYAGPAFLKSSESYPGPTLVANTKLPAETVHEIMAALFSMPPDSWGQRWTAP ANMSSIEKLSEQLRIGSYEYLRHWTLKRTWDIFWPVFFVIFILIIALLTHGWMTEKTVQK RTHQLRRSLVNQRLAERKAQKRAERIEFLEKRSLVGQLSSIVAHELNTPLAAIQNITYML RSRIDSALENNTSVDSDELESIEEQLESIETQALKAGKIVDKVRSYSKPNQQRKTVSDLL RAAKEACEVYAKKADVKFENHCKSGPVYVHFDEIELELVVHNLLKNAFEASSTEQKSMIF CSLKYSTDNSVVLTITDNGSPLTKAAFDNITSQSRVSTKAHGLGLGLDIVCSLIEKNEGK IAFTLSKTRSLITTITLRSADRELISASQSAASAVLKNTSA >gi|301349830|gb|ADCQ01000020.1| GENE 33 36135 - 36407 266 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860609|gb|EFL83686.1| ## NR: gi|302860609|gb|EFL83686.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 90 124 213 213 184 100.0 1e-45 MAGEESPDWNEVARDGCILHGKLSEVSENYLKMDETLIFLLNMRHTRHLRVGSEVMLRIK EVSVDRKAIYAIMVPSDTVSRQYREADFLQ >gi|301349830|gb|ADCQ01000020.1| GENE 34 37084 - 38259 1008 391 aa, chain + ## HITS:1 COG:RSc0011 KEGG:ns NR:ns ## COG: RSc0011 COG0845 # Protein_GI_number: 17544730 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Ralstonia solanacearum # 8 376 6 377 398 195 35.0 2e-49 MTINHFSRYSMLSAAVLCGVLALSGCDKDKEGSAARGPSPVSVVKVTRHDVPADMTWVAK TESSRAVEIYSRVNGFLDARKYTEGGMVNAGDVLFLMDKKPFEVQLSEAQASLDSSLAAH EVAKRNLNRIRPLAKLKALSQTDLDQAIGDFQTTAAAVSNAKAQVENAKLNLSYCTITSP VTGYASSALQTDGTYINMSNAHFATVYTMSPMWVTFSMSENEEAKINQEVKEGILRRPEN HDYEVQLELAGGEIYPITGRVTFSSPNFNPSTGTFELRASFENPNNQLRPQQYVRAIVKG ATYVNAIVVPQVAVQEGSKGHFVWVVTKDNKAQFRPVEVGSWIGNDWLIKNGLEEGDKVV TEGMMLLASEAPVKIVKEVDQKPAAGDKAKK >gi|301349830|gb|ADCQ01000020.1| GENE 35 38271 - 41774 3006 1167 aa, chain + ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 3 1029 2 1022 1051 937 47.0 0 MFSNFFIKRPIFAIVVSLVIVISGLISMFQLPIEQYPNMAPVQIMVTASYPGADAKTVAE TVAAPIETQVNGVDNMIYMTSSSSSTGTMMLTVFFDIGTDPDIAQVQVQNRVNIAQPYLP SEVIQNGLQIEKRSSSILMLIGIYGKGDRYSRDYINNYANVYVVDAIKRVKGAGQSAVMG NANQAMRIWLNPDRMASLGITTSDINSAVANQNKRFAAGNIGAAPALPGTIQTFPVIAPS PSVDPKGYEDIIIRSNQDQSAIVRLKDVASVDLGSQSYDVSSNMNGLPTSYIAVYQQAGA NALDVAKNVRKTLEQLKANFPEGLDYKVAIDTTEFVRISIDEVIKTLFEAVLLVIGVIYI FLQSFKSTAIACTAIVVALTGTFVGMLALGFTINLLTLFGLVLAIGLVVDDAIVVVENVE RNMSEKAMNPIDATILAMSEVSGPIIATVLVLASVFVPAAFMGGTTGMLYKQFAITIAIS VSISGFVALTLTPALCAAWLSHEEPKTHGFFFRFNQLFGRLTVKYGEWTRALFRRTLLVI ILFAGMGVAIFQMFRVLPTGFVPSEDQGYVLAAIMLPSSASLQRSTEAMDAIEKALDPVK GIETKNSIGGFSLLDGGVKTNAGTFFMTLAPFDERYKNSQTAKEMSADAIMQQMQYRGMA SQMQALVVPINPPAIPGLGTTGGFEFWIQDTGSGTPQQLGDVLNNFLQKARQRPELTGLT STYNANNQQLKINFDRDKAQLLGLSTADVFNTLQSQFGSAISSQFSQFSRVWFVIMQSEP KYRAKPEDIDKLYVRNSNGEMIPLSAVITTEYTNGATSLPHYNGFPAAQVIGNAAPGYSS GQGMKALEEVAAEVLPPGYTYGWTGISYEQQSSGSSSAIVFGFGLLLVFLVLAAQYESWA LPGSVILAVPFGVIGALLATWARGLENDVYFQIGMLVMIGLAAKNAILIVEFAVELRHKG MDLVRAAIDAGELRFRPIIMTSLAFIGGTIPLAVATGAGAASRHSLGTGIVGGMIGVSTL ALLFVPIFYVWFEGWAERSGAKSALKLAAKLSSRNIPITDKLRTAILRGPGTVYDPNATV KVSPSGELTVINSPGFNPEGVENQDIGIGDLTSQEQKANVESADKLTDLEREKSVKEDKT EITKEVLSANEVSQKTADAKNNKGEGK >gi|301349830|gb|ADCQ01000020.1| GENE 36 41771 - 43285 601 504 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 12 464 9 456 460 236 31 5e-61 MINRRTFLAAAVSAAVLTGCAVGPDYDRPYVPVPKDYRHIQSEEADLGLLKARWWTEYND PNLDFFVSKAIANNRTLQQTMANVERAAAQLTVARSNLFPQLNYSGDLGKSKASLNTPTG AAMGDKPIKSYETLASASWEIDLWGKIRRQTESARATLRATEAAHRAAISSVIGSVISTY LSILTTEEQYKIAVETAESYHKTYQLFLLRFKHGNVSEMEVAQAWSQWESAMVQIPQIRQ NNTELKNSLSVLTGVPVDDFPKFKTLDELNVPAVVAGIPSQLLEERPDVIQAEEQLRAAN ADIGAAKALYFPSISLSGGLGFSSDQLKELFKGPSKVWQYAGNISGPIFHWGAVTAGVRS AEAQQKALLAAYQLAVSTAFADVDNALSRRQNVIEELRSKRSLVMSLEDYSRLANAQYQG GYTGYFTVLQAEQSLLPQQISLAEVKSRALNSVAQVYQALGGGWIDQALIEEQQAIREIE EAEKLKKQPIKPTTAQPMQKSADG >gi|301349830|gb|ADCQ01000020.1| GENE 37 43796 - 44716 241 306 aa, chain - ## HITS:1 COG:AGpA286 KEGG:ns NR:ns ## COG: AGpA286 COG0583 # Protein_GI_number: 16119430 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 292 18 294 302 102 28.0 8e-22 MVSNNSEHRATLRQWQLFILTVEKGSILAASAAANTDAAVVSREITKLEHLLQEPLLERS RSGVRPTWLGAQKHKEAIKILHDINTVFSETENTSIRSSTIRLAVPGALTGLIAKPLAEF EKLQSSNHTRIEINSYQNINDIQPENFDLIVCLQTLPNVRMIAYDIASISYGIFASPDFI AQNKRISDPAQLEKLPLIHSKSEKVLLQGPFQSITITVEPQIRINSNEAMISAAVEGLGI ALRIPLWAAEPLAQNGKLRHLLPNWHIPNAPVWLLKHPGRKISALEKLIQFLRKTGTFHP TLTKTD >gi|301349830|gb|ADCQ01000020.1| GENE 38 44706 - 45629 172 307 aa, chain - ## HITS:1 COG:RSp0910 KEGG:ns NR:ns ## COG: RSp0910 COG0583 # Protein_GI_number: 17549131 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 4 299 1 302 309 115 28.0 8e-26 MRNLDTIETLETFVVLARLNSVGKTAEQLHISKASVSRRISSLETSIGKLFIRNQNGSEL TPLGCLFLEKIQPLLERFHKLSAPVSRPEGSISGSIRISAPNAIGNGLLIPWITAFQRRN PELFVNLTLTLGPMHIIPPECDIRINHGLYPCSNAVIRKLGEMRRMMVASAAYLAKHGVP KTPEDLEFHELLGGNDLVNGAPLVLLKDNERVIVPIHSKLRLKDHTAARTAALFDAGISV HAFRYDTMELVRRKLLIHVLPDWEPEPSPVSLLLPIGRKPSSAVEALCDFIAEKWRSNPE LVFDHGL >gi|301349830|gb|ADCQ01000020.1| GENE 39 45732 - 46997 1137 421 aa, chain + ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 8 421 9 432 432 333 53.0 3e-91 MTWTVWAAIVIVILTVAALIKRYETRLVLLASGFLMTCLSLDPMQGLNAFAKSMTNSGLI MAICSAMGFAFVVQMTKCDVHLVKLLSAPLSKLGLLLIPAATAITYFICIAIPSAAGCAA AVGPTMIPLLRRAGVSRPGTAAAILGGTFGSMLSPGLSHNAYVAKMANLDVIQTIGVHMN YTLVCGAISMIGVTIMCILLGDYKPGSVSETELNEESEVQRVNVLKALAPLVPVLILVTG NLWLPVIKMGVAQAMLVGAIYTLAVTLADPQSFSKRFFAGMGNGYGEVLGIIIAAGVFAA GLKASGLIAVFIEVLRGSNEIARWGGSLGPFVMGVITGSGDAAAFAFNEAVTPHAPSFGM TVPTLGTMAALAGALGRTMSPISGVAIVICGLAGVSNPIELTKRLAIPMIIAVIFVALAM V >gi|301349830|gb|ADCQ01000020.1| GENE 40 47008 - 48276 923 422 aa, chain + ## HITS:1 COG:HI0584 KEGG:ns NR:ns ## COG: HI0584 COG1473 # Protein_GI_number: 16272528 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Haemophilus influenzae # 8 419 9 421 423 422 49.0 1e-118 MDYIKNAVKLRRELHQIPELGWGEFCTTAKILETIEPLGWKTFVGVEQIGLDAVMGRPED FVEKSKKRALEEGVDPTLIERMHGYTGTIAELDTGRPGPVTALRFDIDCVGVEETDLKDH LPNKENFRSRHAGVMHSCGHDGHTAVGLTMAQWIVDHKDQLCGRIKLIFQPAEEGVRGGA AQAASGLLDDVNYLLGAHLAMMCPTGEVCVYPEGVLCTTKLDVRFKGRPAHPTMSPHLGR NALACACTCVSELLGMARHGKGLGCINVGMMQAGEGRNVIPVHAQVQLEVRGETAEINDF MVDQANRIVKGTALAYDVDYEVEKVGEAGELNNDPELASLVTEVAGSLPSCERVVQHKKL GCSEDFTMLATRVKAAGGKSEFFVVGADRTAAHHQREFDFDEKGLETAFGIFKGCVLKLN GI >gi|301349830|gb|ADCQ01000020.1| GENE 41 48356 - 50161 2087 601 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 90 573 1 457 484 201 32.0 2e-51 MIFKTLLTSAAVSLAVASYAQAAVQDGTFEGTANGKNGPVTVAVTIKAGKITNVKVVKSG ESAMIGDAAIARIPSEIVARQSLRVNNVAGATLSSMAIQAAATNAVKAAGGTPNEFYKAP IKKSASNIDISYKTAVVVVGSGASGMAAAVRSQLNGNPTILIEKMPYLGGDTILNAGTLI ATGSRYQRDVMKEIKDSPELAYKDIMHVGKNRNDPVLVKMVTEKAGSVVDWLIDDLKIPY GPAATQYPDHSASRQLGVTGRSPNFIRTMARIFTDHGGKILMETRATSLIYKGGRVDGVQ AVNADGDKITINAKETILASGGFGAKTEMLPKTLKGYLFYGLDSDAGQGYEMARKLGAQN INMDLVKVYPQGVETVPNHGLAATASSTATVNDTGAIYVNSQGKRIINERASLGELTDIT VAQPDKIMYLVMDKTGYDRYLAKSIEDKLVPDETVLRKWLAIKNNGKPVMVESDNLAEAA KVMGINPEGLEATVKQWNEMASAGKDTQFNRKDPKELIKAPYYIVEQKPRFATTLGGLKA NANMQILGKGGKPIPGLFGAGCVVGGANGADSMTAMMNSWAIISGVDAADGATAAIKKSR K >gi|301349830|gb|ADCQ01000020.1| GENE 42 50479 - 51084 156 201 aa, chain + ## HITS:1 COG:no KEGG:Cseg_2457 NR:ns ## KEGG: Cseg_2457 # Name: not_defined # Def: hypothetical protein # Organism: C.segnis # Pathway: not_defined # 11 198 6 171 290 66 28.0 5e-10 MQLRSEGSSIRFVAISLLIFTAASFIGYWYWSPYYAADQIKNAIESGDTARMSKFIDFPK VRLNIQRQINNQIDLKLREFQSQPVTTKNQIDLYSFQLVDRLVRDLVTEEGIAALISGKN KLTRDSSLNPNDGFKNVHLQAKVADKGMLGVDVEKKYGDSVNRFYVTLSGKNRPDDKVLI TLSREGFFFWRVTNVLLPFGT >gi|301349830|gb|ADCQ01000020.1| GENE 43 51358 - 52071 295 237 aa, chain + ## HITS:1 COG:STM2177 KEGG:ns NR:ns ## COG: STM2177 COG0179 # Protein_GI_number: 16765507 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Salmonella typhimurium LT2 # 3 234 4 232 233 172 39.0 5e-43 MPFVFAQACVPAVPVWGEKDRYFPVHRVYAIAGNYADHLAEMGRVERAEPVFFTKPSDGL VVCKEGKSVEIPYPRETNSFCLEVELVVAIGKTAPETGFITPEEAEEYIFGYAAGVEFTR RNFQTVARENRQPWEKAKCFDNSALITEIREKHRMPDMDAATLWLYVDNQERQRGNTSQM MYSIPELVSEVSKYWRLTAGDLIYTGTPKGSGPIESGQSFEGGVNGAGKFSGKVFGR >gi|301349830|gb|ADCQ01000020.1| GENE 44 52134 - 52322 161 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860620|gb|EFL83697.1| ## NR: gi|302860620|gb|EFL83697.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 62 9 70 70 112 100.0 7e-24 MAIGSAVQRGNSVNVYNERGVMLFSKVGELIGYTGTTVTIRRGNQAITYSDKGIQKFCKV CS >gi|301349830|gb|ADCQ01000020.1| GENE 45 52408 - 53595 1126 395 aa, chain - ## HITS:1 COG:RSc0918 KEGG:ns NR:ns ## COG: RSc0918 COG2951 # Protein_GI_number: 17545637 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase B # Organism: Ralstonia solanacearum # 37 352 54 370 372 209 36.0 1e-53 MLRRSILISGISGLAAFSGLALAQSMSSTSAEKALPYSKRPEVKKFIQDVCSRRGLNQDW VAAVLDQATYQPKIERLMTPKRTKPGTKDTRKDWEKYRNIFLGAHRLNLGVQFWKDNETS LERAREIYHVDPAVIIGIIGVETRYGENTGNWKVLDSLVTLSFDYKRRADFFKKELEEFL VILYKNDLKPFDVQGSYAGAVGLPQFMPSSIKRFGVDFDGDGKIDINHSTADTIGSIANY LSKHGWVEGLPMLIEADISPAQAAKFGGGTNPRFTWNQLISNGVKPLDNDEHFAGNMPVF IVDYPFYLPGSLDFEKLYRVGTKNFTAVLRYNSSYFYAGAVAELGSAIAEMMGKKGLIDG EKLLPPHLKPQSSGIAKNLKGIKETVTPISSGNNL >gi|301349830|gb|ADCQ01000020.1| GENE 46 53723 - 53842 83 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFSLGQNRKILRLFVLTYLFAAILVVEQKFTGTQNTELT >gi|301349830|gb|ADCQ01000020.1| GENE 47 54011 - 54139 82 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDSEIMSDAVFKKVSILTNRALMLLANCCVLIICWSSMTAAV >gi|301349830|gb|ADCQ01000020.1| GENE 48 54123 - 56372 538 749 aa, chain + ## HITS:1 COG:SA1322 KEGG:ns NR:ns ## COG: SA1322 COG0642 # Protein_GI_number: 15927072 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 341 747 204 584 588 150 29.0 7e-36 MISESIGSKVIPVSRLNKLAEKMPYLTSLKLISDTGSVDFHHGESSVSTAELMSAFAGSE VNVRSFQNEICFGSRIPEADSYDRSYLLIGCEPKEDIAAIFERSVGAEPYSLQIFDSKQK EIFFTSLNDSGNVRPQNLSSEFVKISEQMLGAPTPLWRTNQKRNDSAVLSIAEIPDTDWR AVFSQRVTFRDKQLLSSLLTSGVFLVCGALLALIVGTFLGFRLTNYVQTLIDQINAFKKD GSIKKPDRSFLANAPIELKLLSVQFEKLVRQVQSTQKKLEESNLDLTHQVNLRTRTLNQR NQELRALQFLLAPLQDEPHVVIKRTVESFRLILGLNQLDFVDEPERGRQDLASLPVKLST GVLGYLSFERPDYTQENRVNTSLQRLANSIAIVLENKEMFSSVKASQSRFNALLESMTEG VVLIGKTGSLLYSNKTAREILSIAPGDGIAKVENYIEEHFRKVYLADSPNNPQDFFAGPT RYVSKVDSDFFIEASGFLVPEFHGYVGPRMGLLLRDISEEVSMERMKRNLISVVAHELKT PVTTLRLQSETLQRQIRSGKLSDSQQLLTEMLEESERLQNLICDWLDVSRLEAGSLVIKP KVQTVTAILNKAMKSVHLHFPHLEVSLKVEPEAECVLADKDRMTQVFVNILENAARYNDK EKPTCNVRSEKIDDSVVISFSDNGIGVSEKHLSKIFDSFYQVDMGSGRKVGGTGLGLSIC RGIMAAHGGKIWAEQNPKGGTVFKISLSL >gi|301349830|gb|ADCQ01000020.1| GENE 49 56382 - 57089 429 235 aa, chain + ## HITS:1 COG:L0125 KEGG:ns NR:ns ## COG: L0125 COG0745 # Protein_GI_number: 15672379 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 6 234 4 231 233 170 43.0 2e-42 MHRPLILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMP EIDGMSMLKRLRKSSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVL RRGKTRSLVHAPQSQELICGALRLLPGPRQCYVKDALVKLTDREFRLLLELVKHPGEVMT HERLLRAVWGDESIGEVQYLRVTFARIRRKLEQCGLDGGVIAAYSSVGYLITEPD >gi|301349830|gb|ADCQ01000020.1| GENE 50 57252 - 58535 1889 427 aa, chain + ## HITS:1 COG:no KEGG:CCV52592_1711 NR:ns ## KEGG: CCV52592_1711 # Name: not_defined # Def: citrate transporter # Organism: C.curvus # Pathway: not_defined # 6 424 5 425 430 375 52.0 1e-102 MTTQMIIAQCLMVLTLVIMITGMTPIYITAITGAAISAIVAGFPLAGSAPMTIAKMINSG LNPVIADMTGILLFIGIMQATGFLDVIVRDIVLWGNKLGGGPGVCTAGGIAAGVIGALTG FTQPVITAVITGPAAVKLGVDPNKVAGIQAHAGHIGNLAGFTHPTQVAILATAGIGYGLF NVLGLIAALSIFFMSYVRVIYDMHKRGVTVSEEDRIAVMEEIKNKEYKTTSGKAFFPFLV LLIGFICGLPIFLVGLVSALVVMILAHKDMKSAEQTMMQGVGLIATPLVATIGFLFMSTV IKQIGLVDTISTFASPMLSFSPVIVMFCVAFVTGFMTQSYAASVAVLVPFLQVVLGTGAD PFAAAFAAASGASLIQYFLTGGPVAALATVIPVVPGSNLKQANLFQRPSILFGCLVALII TILLMIF >gi|301349830|gb|ADCQ01000020.1| GENE 51 58593 - 59825 925 410 aa, chain + ## HITS:1 COG:no KEGG:Dred_0410 NR:ns ## KEGG: Dred_0410 # Name: not_defined # Def: hypothetical protein # Organism: D.reducens # Pathway: not_defined # 5 396 3 393 411 316 43.0 1e-84 MKTNISLSAAPFGVIGVVGHAGCGHANSHLGFIQDDSGGLSAVLGLLREATGLSLEIAEC NVHTGLEDAYFQVKTVSGGEGIGTARRGITASEARLASHCVGKQAVCSQAIAVDCFGRIL GQGAMEVPVALQTAIANAALDSFVKAFSDQFIIKEEDLEGNCGKILGTVLDIHGVPVSVM ALSNATVGGIGPNEDIEGNVNLYGKKDLSEKLHLDRIPSFVIEGKVCAEPLSSVIKEPTF LIRAFPGDDNTVAAKALLKAAQSLDLPVEYRPELLGRSDTAMEDLTRQQGRKIIEFGKRL SKASTAQEKVRIAAELNEFCSQELGGITFMSNDVHKVMGGVGCIPGTSAVMSLFISREQL QKQVLPTLESEDVKNYDRIICAAVGYLNENLGQANEELIAAQEKYGMTRH >gi|301349830|gb|ADCQ01000020.1| GENE 52 59848 - 60849 1053 333 aa, chain + ## HITS:1 COG:CAC1714 KEGG:ns NR:ns ## COG: CAC1714 COG0252 # Protein_GI_number: 15894991 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Clostridium acetobutylicum # 5 323 2 320 331 256 41.0 3e-68 MSEKKKVIVFTTGGTIAMKFDPKVNGLVPAVSGADLAAAVPGLDKLADVEVREFSNHASC AMTPQKMFQLSQMIEEALKEEGVAGAVVTHGTDTVEETAYMLDILHKSEKPIVLTAAMRG AGDTSPDGPANIYCAVKTAASEEAKGKGVMVLLNEIIHAAGQVRKTHSANPDTFASPWWG PIGYCDVDRVVFRRTPLDRHTYSPKELTARVDIVTGQTGIGRDYIDFAVAQGCKGIVLEG FGRGNLPAIVEPAIKDATDKGVVVVITTRTPGGRPYQVYAYPGSVTDSRNNGAIHGGEFS SAKTRLKLMVLLSERPELAKKENREELERLLDV >gi|301349830|gb|ADCQ01000020.1| GENE 53 61103 - 62035 445 310 aa, chain + ## HITS:1 COG:RSc0919 KEGG:ns NR:ns ## COG: RSc0919 COG0123 # Protein_GI_number: 17545638 # Func_class: B Chromatin structure and dynamics; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Deacetylases, including yeast histone deacetylase and acetoin utilization protein # Organism: Ralstonia solanacearum # 4 307 3 305 307 245 42.0 6e-65 MADTAFYTHGLFFKHKMGSNNPECPRRLEKIEELMLAAGTSQYVDKKIPPMVAVTDMLAA HDADYISYLSQNSPKEGLNTISVDTAMNPYTWEAAQYAAGAACAGVDDVLSGQYKKVFCA VRPPGHHAHRDHSGGFCFLNNVAIGALHAIGIYGLKRVAVVDFDVHHGDGTSNILGGRDD VLILDGFQEALFPYAHIHHAPPNAIYTPFPEGTEGIALRRTMDEVWMPRLKEYKPELIMV SAGFDAHREEDQAQLLMVERDYAFLGRRLASCQSEIPECRGVVAVLEGGYNTSSLARSCA AFIHQLACSD >gi|301349830|gb|ADCQ01000020.1| GENE 54 62039 - 63319 778 426 aa, chain + ## HITS:1 COG:Cgl2562 KEGG:ns NR:ns ## COG: Cgl2562 COG2270 # Protein_GI_number: 19553812 # Func_class: R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 14 423 15 438 440 133 25.0 7e-31 MDSGKNYLMPGVSKREVLAWASYDFANSGYTTVILTAVYNAFFVSVVAENAVWATFAWTL TITLSNLLSIAVIPVISALADAQANKRFWLAVMTGICCMSTATLAYTGHGTLASAVFLIV ISNTAFNAGVSLNSAFLSELAKPEAFGKVSGWGWSFGYLGGIVSLAACLLIVFEGQKAGL PADVYVPYTAMSTATIFFVMALPMLLYVKERSKPKNISFEKTFKRIRQESVDSFKLLKRY REFLKFCVCGLFYQAGIAVVITLSAVYAQLVMKFTTAQTITLILVVNITAAIGAFVFGYV QDRLGHKKTLALTILLWIIMGVMAAFSHGPVSFWIAANIAGIAMGSSQSAGRAVVAVFAP AGELAQFYSAWNVAVWGANVLGPITYGTVTWLTSGDQRTAILVTTLFFVIGLLILRRVHL PSKTVC >gi|301349830|gb|ADCQ01000020.1| GENE 55 63417 - 65066 2108 549 aa, chain - ## HITS:1 COG:SPy2085 KEGG:ns NR:ns ## COG: SPy2085 COG2759 # Protein_GI_number: 15675843 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pyogenes M1 GAS # 1 548 2 556 557 545 53.0 1e-155 MLTDIEIAQQTKLIPIDQLAHEYGLSDDQFIPYGRDKAKVALDTSNPKGKLILVTATSGM PAGSGKTTTSIAVAQAFKKLGEKACLALREPSLGPSFGMKGGAAGGGYSQVVPMESINLH FTGDFHAITAANNLLAALIDNARHQGQVDLKEITWRRVLDVNDRMLRNIVTGLGGSANGI PTETGFDITAASELMAIVCLAAGEEDLRVRLDRLVVGLKRDGSAYTCKELGATGALMALL KDAMLPNLVQSIEGVPAFVHGGPFANIAHGCNSVAATRAAMTIADWAITEAGFGSDLGAE KFYDIKCRMNNLQPAATILVTSLRALKWHGGVPLPEIGKENMDALINGLPNLKAHIASLK RFGQQVVVSLNHFANDNEEEIDVVRKECLAAGVRFAISDGFAKGGEGALDVAREVMAAVK EGSKPLNYAYSLDESIEEKIQDVNTKVYGGQDVSYSSAALKDLAKIKALNMGFEKLPICI AKTPFSMSHDPDLKGAPHGFTLPVQRVILNAGAGFLVVTTGAIMRMPGLPKKPAAYTIDV VDGKITGLS >gi|301349830|gb|ADCQ01000020.1| GENE 56 65101 - 65223 93 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDKVSNLLIAFLGVCEQGSILMADARGGSKNKKLEIRIFP >gi|301349830|gb|ADCQ01000020.1| GENE 57 65360 - 66001 752 213 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860630|gb|EFL83707.1| ## NR: gi|302860630|gb|EFL83707.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 213 1 213 213 383 100.0 1e-105 MAQSADLKAKIEGLNKVFQFYYKENFKTLRKATDFYIPWFIGRKKRLEEFQKQYIPFSVA LFLEGVRNSTLKMEGEPNEELIEALRTKLLHKSFKPDFDEYWNVIESTLERNPENPKEVS DAVSALLMFKLYGPKASEPMPEKLDSQRHTIASEFQVGKIHYQYSRGVRIALERLLNPKF DPEFVPRAAHDPKVLNAEVAKSETPSEEKKKAE >gi|301349830|gb|ADCQ01000020.1| GENE 58 66155 - 66469 208 104 aa, chain + ## HITS:1 COG:HI0489 KEGG:ns NR:ns ## COG: HI0489 COG1238 # Protein_GI_number: 16272437 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 4 99 53 152 157 83 47.0 1e-16 MHEFQTHLWIVVFVATAGNTLGALITYGMGRLIPNKKQEARSLELLKKYGPITLLFSWLP IVGDGFCLGAGWLRINFWRSFLLILLGKFARYLVLAAVSLHMFS >gi|301349830|gb|ADCQ01000020.1| GENE 59 66659 - 67849 1033 396 aa, chain + ## HITS:1 COG:CAC3580 KEGG:ns NR:ns ## COG: CAC3580 COG2070 # Protein_GI_number: 15896814 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 17 308 15 277 355 106 30.0 6e-23 MQCLDDFRLSFKGRDFLPLMVGGMGTNISTANLVLAIEKLGGMAHLSDAMLPDVADREIG THFTKEKTIRFKSMIEEADKTEEKFNLEALSRVSKQYFSDVMEKATGKGLVLVNCMEKLT MNDPIATLKARLNAALDAGVDGITMSAGLHLSSLKLMQDNPRFNDALFGLVVSSARALNL FLKRTAFIGRKLDYVVVEGPLAGGHLGFGEDWRNFKLEDIVKDVVKLVKDTGLNVPVLGA GGIFSGKEAVDLMKKTGASGIQAATRFTIAQESGLPDPVKQVYIDAKDEDVEVNHASPTG YLMRMLKNSPALTANNRPNCESYGYMLSHGSCPYLKEWLENSSEKTKCCLCTNMRNYKVW TCGTSVSRLKTTTVRGQDGKWVLPTAEQIFNDYRLV >gi|301349830|gb|ADCQ01000020.1| GENE 60 68037 - 68789 1001 250 aa, chain + ## HITS:1 COG:mlr3487 KEGG:ns NR:ns ## COG: mlr3487 COG2086 # Protein_GI_number: 13473012 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Mesorhizobium loti # 1 250 1 249 249 232 53.0 5e-61 MKILVPVKRVVDANIKVKVGPDGKLDVANLKHSMNPFDEIALEQAVQMKEKGIANEVIAV SVGDTKSQETLRTALAMGADKGVLIQTDKPFEAEPLNVAKLISAYVKQVNPDLIICGKQA VDNDSNQVGQMIAAMCEYPQATHVSAAVMKEGKLEVTREIDGGYEVLDLTLPAVVTADLR LNAPRYVTLPMMMKAKRKPQEVVQASALCPDLRAHVEVVGYEAPAARKVGRKVANVDELI DKLKNEAKVL >gi|301349830|gb|ADCQ01000020.1| GENE 61 68800 - 69729 1492 309 aa, chain + ## HITS:1 COG:BMEI0097 KEGG:ns NR:ns ## COG: BMEI0097 COG2025 # Protein_GI_number: 17986381 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Brucella melitensis # 1 309 40 348 348 267 53.0 2e-71 MAVLVIAEHNHAALNPAVYSLVTAAQKIGGDIDIMIAAQEGGKLAEEAAKINGIRRVLLS EAPYFAEELPENLAASVLEVAKEYDYFLFVANPAGKAAAPRVAAVLDVAQISEITEVVDA KTFKRPIYAGSVIETVRALDPKVVLTVRATAFDAAPTGEGNAELERVVPASPVIKVTFVR SEQVKSDRPDLQNAKIVLAGGRGLVDEAEFAEMGKLADKLGAAVGTTRAVVDAGIAPNDW QIGQTGKIIAPDLYIGFGISGAIQHIAGIKDAKVIVAVNKDPEAPIFDVADYGLVGDAMT VIRELEAKL >gi|301349830|gb|ADCQ01000020.1| GENE 62 69916 - 70176 289 86 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119899188|ref|YP_934401.1| 30S ribosomal protein S16 [Azoarcus sp. BH72] # 1 83 1 83 83 115 69 8e-25 MVVIRLARGGSKKRPFYNIVATDSRNRRDGRFNERIGFYNPMASGAAPRLSINEASLNAW VANGAQMSDTVARLYKEFKKAAAPAA >gi|301349830|gb|ADCQ01000020.1| GENE 63 70194 - 70718 185 174 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 12 168 5 160 179 75 30 9e-13 MTNEKNSGAEPIVLGALHGAYGLKGWVRVQPFQGTSALLGSKHWQHVLPDGEVRPVELEK AKLHGAGIVAKFQGIDTPEDAAALRGAVALYRKDFPEAEENEYYWVDLIGCEVVNKEGQS IGQVKGMIDNGVHDILNVKRADGKEVLIPFVEDYLAEVNVEAKKIVVDWDPSWD >gi|301349830|gb|ADCQ01000020.1| GENE 64 70727 - 71476 518 249 aa, chain + ## HITS:1 COG:PM1297 KEGG:ns NR:ns ## COG: PM1297 COG0336 # Protein_GI_number: 15603162 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Pasteurella multocida # 1 244 1 241 245 254 52.0 8e-68 MRFDIVTLFPEMPLLIEKFGITARAAKLGLWQLKCWNPRDFVFDAHKTVDDRPFGGGPGM VLLAEPLADAVDAIRKDGNYGKVIAFAPSGKTLNDDKVRSLSEDNQDLILICGRYEGIDQ RFLDTYVDETLSIGDYVLSGGELPAMVLMDAVIRQLPGAIKDLSASDESFSTGLLDAPHY TRPEVWRDMPVPDVLLSGHHKNIRAWTRKQVLQVTAQTRPDLVKIARSKNLLTREDERVL RDIKESTES >gi|301349830|gb|ADCQ01000020.1| GENE 65 71558 - 71926 491 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|73542222|ref|YP_296742.1| 50S ribosomal protein L19 [Ralstonia eutropha JMP134] # 1 122 1 122 127 193 81 3e-48 MNLIETLEKEEIARLSEGKTFPKMNPGDTVVVNVNVVEGSRKRVQAFEGVIIAIRNRGLN SAFTVRKISSGEGVERTFQLYSPLIASIEVKRHGDVRRAKLYYLRNLSGKAARIKEKLVR KA >gi|301349830|gb|ADCQ01000020.1| GENE 66 72068 - 72586 658 172 aa, chain - ## HITS:1 COG:no KEGG:azo0597 NR:ns ## KEGG: azo0597 # Name: not_defined # Def: hypothetical protein # Organism: Azoarcus_BH72 # Pathway: not_defined # 40 172 34 167 167 73 32.0 2e-12 MLRTRRTPKDRAAFPTELPSGLRIPAGVSPETYASHRDVLSVLLLRFMTSRLRAMYQAYD GDLTLCLVLGEIASRNTERFYDERRGYQPASFNGQRQYLPCNALSISDVTGIPRETVRRK LAKLVDLGWIEKTPDDMYVITDRIGTVFAAFDDSQTYDLMRTSEQIKNVLQS >gi|301349830|gb|ADCQ01000020.1| GENE 67 73326 - 74234 631 302 aa, chain - ## HITS:1 COG:RSc0940 KEGG:ns NR:ns ## COG: RSc0940 COG1162 # Protein_GI_number: 17545659 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Ralstonia solanacearum # 11 294 24 312 318 236 41.0 5e-62 MKEQVWFKARVISSHGKHSFVEKEDGTVLEATRKGKKVDLAVGDIVECLQTSPEQVSIQK IEPRRSLLYRSDELRTKPLASNINQVAVVFATRPSYNPHFIWKAMLAAETADIHILMIRN KTDFIEDEPTVRPFINQLKELGAEVVEVSATMDPEGTVKTLEPLFRGKVTLLIGQSGMGK STILNLLVKDAGQRTQEYSVALNLGKQTTTAARWFNYEGGAIVDSPGFQEFGLSHLTLND IMRGMPEIRDRVEYCRFTNCRHLNEPGCAVKTAVDKGEIDPERYAFYKELAEKAIAAEKN TF >gi|301349830|gb|ADCQ01000020.1| GENE 68 74241 - 75506 1110 421 aa, chain - ## HITS:1 COG:RSc0941 KEGG:ns NR:ns ## COG: RSc0941 COG0501 # Protein_GI_number: 17545660 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Ralstonia solanacearum # 7 415 4 413 418 322 48.0 1e-87 MNSAAAFEIVFILFLFGNFVLKYYLDRRQVQSILRNRGAVPLAFAGKISLEAHQKAADYS VERIKFGQLTRITDLGFVLIATFGGLIQWIYGEVYGWFGADILAQIVIILGYALLSSLID LPFSWYSTFRIEAKYGFNTTTPARFVKDLLLSGILSLILGIPILSAVLWIWNAAGAFWWF WAWLAYIFFILAVQWIYPTFIAPLFNKFTPLPEGELKSRLEGLLSRIGFASKGLSVMDAS KRSAKGNAYMTGFGKNKRIVLFDTLLSKMTPEETEAVLAHELGHYKLHHIYKMMAFSFIF SLLFFWILSVLAECSWFYEGLGVNLSHGASHGVALILFSVAVPVFLFPLAPLTSLFSRKH EFEADAFAVRYSSGSALISALVKLFSDNAATLTPDPLYSAFYSSHPDAAIRIATIQKEMS K >gi|301349830|gb|ADCQ01000020.1| GENE 69 75720 - 76184 355 154 aa, chain + ## HITS:1 COG:no KEGG:Slit_2810 NR:ns ## KEGG: Slit_2810 # Name: not_defined # Def: hypothetical protein # Organism: S.lithotrophicus # Pathway: not_defined # 9 90 24 106 158 68 44.0 9e-11 MPSLAGVHVDVNIGVGSPGYYGVLPIQGVTPSLWNANPIVAIGAALAGAPIYLTVPDKHR RHWKRYCAEYGACGVPVYFVRRGWYNNYYGHAAPPPPPPGPGFMPPPPHHAAPPPPPREY GGPRHFKDHGWKHRPPGHDWDGHGHGHKKKHHKD >gi|301349830|gb|ADCQ01000020.1| GENE 70 76259 - 76873 609 204 aa, chain + ## HITS:1 COG:VC0341 KEGG:ns NR:ns ## COG: VC0341 COG1949 # Protein_GI_number: 15640368 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Vibrio cholerae # 26 204 3 181 181 227 56.0 1e-59 MPRKIQNGVESNMSNNGFAVDRDPLFNENNLIWMDLEMTGLEPQINRILEMAAVITDPQL NVIAEGPVVAIHQDASILSNMDSWNTATHTRSGLVNRCLESKVTEDEAAQIFIDFFSKYV PAGKSPLCGNSIGQDRRFMARWTPRLEQFFHYRNLDVSSFKECVKRWAPEVMKKYQKTSR HEALSDIYDSVEELRFYRQEIMKI >gi|301349830|gb|ADCQ01000020.1| GENE 71 76941 - 77861 1081 306 aa, chain - ## HITS:1 COG:BMEI1024 KEGG:ns NR:ns ## COG: BMEI1024 COG2084 # Protein_GI_number: 17987307 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Brucella melitensis # 16 301 5 291 291 358 63.0 7e-99 MYFQAKDYSPVPAGTKVAFIGLGTMGFPMAGHLLHAGCQVTVYNRTASKAQAWVEKFGGK AVATPREAAQDADVVFTCVGNDNDLRSVLLGENGAFAGMKKDAVLWDATTDSAEVAKEMA AEAESRGLHFVDAPVSGGQDGAVSGSLTVMCGGDAEIIERVKPIADAFACSIRRIGPVGS GQLAKMCNQICIAGVVQGLAEAIAFGQTAGINMHTVLDVIGKGAASSWQMHRRGDTMIEG KFDFGFAVDWMRKDLGICLEQARKTGADLPLTALVDQFYGEVQNMGGGRFDTSSLILRLN REPKKS >gi|301349830|gb|ADCQ01000020.1| GENE 72 77861 - 79315 1780 484 aa, chain - ## HITS:1 COG:PAB0912 KEGG:ns NR:ns ## COG: PAB0912 COG1794 # Protein_GI_number: 14521575 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Pyrococcus abyssi # 241 476 4 227 228 160 40.0 7e-39 MNHKVIGISQSFSPAPFVRALKERLQSTFLPDGSRPRIELVDLDWSSPDADAPKLVQEGD VKIRVLEESYQLIEKGAQVIALCNFRNISFLNEVQTEITTPVTDILQACIEELKKNPVKK LGYLGRPGTDKAKLITETVSREVPVEWVYPSEAMLEVFDELESGSRCAVIPDQKKACELF GKVCSNLLSEGAELVFPTCVMQALFAATLKSEGYNVLDSMSAYVSYLCFTDWEKLPKPFK IGIVGGLGPAATVDLYDKITKATPAKNDQEHIKVAVEQNPQIPDRTKYLLHGGVDPTLSL YAACRKLEKDAVDAIVIACNTAHAYFETIVPHLSVPLINMQQVTLEEIRDKFGPDVVIGL MATDGTIETGIYGRKAKSMKLAMVVPDKEHQAMVMEAIYGEKGVKAGFTDGHCKEVLLKA AEHLVRDKGAQALILGCTELPLILEETDNIKLGDGHAAIVDPTASLARRVVKVAGEITKI RGVR >gi|301349830|gb|ADCQ01000020.1| GENE 73 79506 - 80714 1218 402 aa, chain - ## HITS:1 COG:SMa0447 KEGG:ns NR:ns ## COG: SMa0447 COG0628 # Protein_GI_number: 16262687 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Sinorhizobium meliloti # 24 361 24 360 373 197 37.0 2e-50 MLLPSLRDRADYVVRFLFGSFIAIGCFLVVWPFATAMSVAAVIAIVSWPLFKRVRKEVGG RNLVATLIMVSLLAILIVLPIAGLSLVSAQEIPTLIRYVREWIASGFTVPEELKEIPFVG EWAYTQAAHLLGNKEELAAIAQKLFDPVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDG EVLSQKSLALLTRMSGSIGAEVRDIIVNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGA ITLGVAVFVLSAVPIGPPLVWGPAAFWLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILI SKGASLPLSLIYLGVFGGVLAFGFMGIILGPVVIAVGIAMSKTWLSVSATVNDKDQPTAK TETVLKKLSKNSIESDIVSDVTGEQRSSNHHHYSQPKNDGQK >gi|301349830|gb|ADCQ01000020.1| GENE 74 80786 - 81178 396 130 aa, chain - ## HITS:1 COG:CAC1483 KEGG:ns NR:ns ## COG: CAC1483 COG1733 # Protein_GI_number: 15894762 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 17 113 7 103 108 140 69.0 5e-34 MDKVKSEPSEAFQSEEFHCPVEATLSLIGGKYKTLILWNLIGKTLRFSELRRLIPSATPK MLTQQLRELEDARLLIRKVYAVVPPKVEYSLTPLGTSLRPILESMYEWGSQYLLNQGTKP CCSMKKLPSA >gi|301349830|gb|ADCQ01000020.1| GENE 75 81272 - 84070 2817 932 aa, chain + ## HITS:1 COG:CAC3655 KEGG:ns NR:ns ## COG: CAC3655 COG2217 # Protein_GI_number: 15896888 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Clostridium acetobutylicum # 3 751 74 814 818 632 48.0 1e-180 MKKNFDVTGMTCSACSNRVEKVVSHVPGVEDVNVNLLKNSMTVDYDETKTGLEQIIQAVT DAGYGASEKQAAGSPAAKSVDPTLAAKKEAAQMKTRLYVSLFFAAILMMLAMGPMVGMPL PEVMSGTKGAPINALTQFLLTLPVVFVNFKYFTVGFKTLWQRSPNMDSLVAIGSSASMLF GLFALYMMLYALGQGDEATLHHYAHNLYFDSAAMILALITLGKYFESRAKHKTTDAISQL MSLVPDKAVVLKNGKETEVPVSSVQVRDIVVLKTGSRVPVDGIVVKGSGALDESSLTGES IPVDKKEGEELSASTLLTQGYIEMRATKVGGDTALAQIIKLVDEATSTKALVARLADKVS GIFVPTVISIAIIAAIVWMLCGYSWEFALEIAVSVLVISCPCALGLATPTAIMVGTGRGA RNGILFRSAEAIESLEKVDAVVLDKTGTVTSGKPSLTDVIAFGNVKPEELLTLVASVEQK SEHPLATAIVEGAKALNLSLKEASDFVQQLGNISGTCDGKSVRIGNKSVISSEDAKTKEL ADGLADEGKTPLYVIADGKMVGLLAIADPIRPDSKQAIEAMQAKGKEVWMLTGDNEKTAR AVATRVGIKNVRGEVKPAAKEAVVRELQARGKKVLMVGDGINDAPSLVRADVGAAIGAGT DVAIEAADVVLMKSRLSDVVNASALSHSTMLNIRENLFWAFIYNIIGIPVAAGVFYTAFG WILNPMIAAAAMSMSSVSVVTNALRLRGWKPVLRDSGNSDKSSDQVLLPSLRQLADVAVE AEQKDATSFVYKVGVEDMMCEHCVKAVKGALEKIPGVVSADVSLEQKSAVVRADRALSQE EVTDAIKAEDYEVTSFEAVSTPKEAVAIKIDGMMCEHCVKAVTKALSGIDGVTVLSVSLE DGLAKVAVPEGFDTEKLKAPIEDEGYQVVNIE >gi|301349830|gb|ADCQ01000020.1| GENE 76 84108 - 85067 615 319 aa, chain - ## HITS:1 COG:YPO0799 KEGG:ns NR:ns ## COG: YPO0799 COG0583 # Protein_GI_number: 16121111 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Yersinia pestis # 1 306 1 293 302 152 32.0 9e-37 MDRLTKLEVFSKIAETGSFYETARSLNLSRPTVTRLMAELEKDLNQKLLFRNTRRVSLTS AGESFLPRARELLNMASDIFHSPRHSEKYDGLYRINIATTYANFKLPELIEEFQKLHPGL RIELLLSASPLPLVQNRIDLRFQIGGKVNPLYIKRSLGKSNSWMCASPSYLDTHSRPETI KDLLKQDLLHNLVIDEDLGEELLHVKGRGVYTWWFTHGDRREKLKVAPKFACNYSEPLFR ACLRGQGIAYLPISESLLDVLEGRLEVVLPEYRGILVDIWAVYASSAHKPPFTEELLTYV KRAFETILANPVEQRAEEN >gi|301349830|gb|ADCQ01000020.1| GENE 77 85213 - 86703 1122 496 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 40 492 42 476 484 205 33.0 2e-52 MTFTRRKFFTFSGSVAALSLFSQAEAMPVEPPTKYDGDFDIVIVGGGGAGLSAACAASEL GASVLVLEKRPFLGGSSLITDAMFAVGGTRLQKSRNIKDSPELYAKDLYEVGKHFNQKGL PEVLSQAALKQYEWMENVLNVHPFTLEHQGGQSVPRSHQFKAPEVIEAMTKFARSHGVKI LTGVSANRLYWDEKGKRICGVKAVNAKKEILSFHAKRGVIVTSGGFARNPQVLQRFAPYL KDVQVLSGTGSLGEGMLMAQAYGADVRDTSFIAATFGAKKGMTDISELSFIQFNGGVVVN KEGKRFVDESKTYMEISEQAVKQPEGKAYTVFDSNIVREAVKDTPALSRMWLAIPEGRIP DYVYSGNTLAEAAKKAGMDGAELEKTIKKYNEDVAKGTDSKFGRQYLEGKVGKLVKIEKA PFFVFPTSSVIFGTYCGLLINAYAQVIDVFGDVIPGLYAAGEVTGGLHGAGYMSGSGYAK ALSFGRVAGQKAFQDN >gi|301349830|gb|ADCQ01000020.1| GENE 78 86819 - 88300 1208 493 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 2 490 7 477 484 209 31.0 1e-53 MEVSRRNLFKGMTVSALMMSAPAFAQLEAPQKWDAEYDIVIVGGGAAGLSAATVAADEKL SAVLFEKQSFLGGSSVLNGGMFTVAGTKEQEKQGIKDSQELFFKDMMRAGKNKNNPDVVK AFVKTANEQYDFILNKLKLHPDMVVHQGYQSVPRSHHFVTSQILTAMAAYAKKGGVKIET GVKVLRLVWNKDHSRIAGVEIESKGKKQFVLAKKGVLLAAGGFSRNPELLGRYNPPLESA ASIAGAGTQGDGILMGLSVGADMLDVAYIKATYGFRLNPKHIDEQSQLYWSGGIIVNKNV KRFTDESQSYKVLADFALAQPEGKSYIVFDRQMAENDFKNNPQGRILIESIVKENKVPEW IFAGETIEDAAKKAGLNPKELAKTVKEYNEGIKNDSDAFGRKTLVDTSGKPIPLDKGPFY IMPATAAVIATYCGLKINKDAKVQNVFGEVIPGLWAAGEMTGGVHGAGYMSGSAFGKAQT FGRIAAKDIAKQK >gi|301349830|gb|ADCQ01000020.1| GENE 79 88362 - 88757 164 131 aa, chain + ## HITS:1 COG:no KEGG:TDE1820 NR:ns ## KEGG: TDE1820 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 1 131 1 131 131 194 67.0 1e-48 MKHRVKVTVLDTLLYEDLQREYCQNPCSGKCPVYNKGDVFVFYREDGKDSFWQCGLNTLV STNGNPAEVAGGSAKPFCSEAWDAISRYIYTGLQGGSIMKGWMKEENTMIACCSDGTRPV IFKIERIDVSE >gi|301349830|gb|ADCQ01000020.1| GENE 80 88983 - 91013 653 676 aa, chain - ## HITS:1 COG:Cj1055c KEGG:ns NR:ns ## COG: Cj1055c COG1368 # Protein_GI_number: 15792382 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Campylobacter jejuni # 40 604 9 589 657 164 27.0 5e-40 MHNFNSKQHELITHVVMDHETSIEQEDYWLKHFFKAVVFFIASIIVLSLFRIFFLYYFSA GLNITGANFLPALGVGIRVDAKWLSLALLPAFLVFLFSYWKPFLFKYAAVLAGFGLFGMV LLDAVNFGFFSFYKTPISPLVFGFFQDDTKAILQTLWQDWPILSYLLVLFCGIAVPFVAA SLFFNRLKASPRGYQLFLLSIVSILLFAFFIRGSIGKFPLRQEDFAVSKVQLINASVPNG AAALYEATKAWRNFQIKGEPSQALTKFGYSNIEEAKKDLAVRAHTSTQLSFRPNVVFAVM ESMSGDIFNSHDSLVNNTLGALDTALEDAVVFRKAVSIENGTFPSLEGLLFDTPISPISQ SIYGRKELSFSQIRAFKEAGYRTIFLTGCPEPWRQINDTFKFYGFEEIYGQAAIGEKFPN AEKSPWGIGDKWMFKFAEDLLKEAEGTGRPVFIMMLSTTNHPPFKVPDGEQVSKVDISKL PKTINLEGSYDGNMKMLLKTYQYAADSLGNFILDLRNKGWLKNTIVAATGDHNARMRYQS EGNWHHVFGVPVLFWLPDQNLKASVDTDRWVSHRDILPSLLAMSTGKNLGNEKGRNLFAK DTEEGAVSFIGWSGSGFVIGKPGMVTLNGKNLECYNWRDDKLVKAESCSNEQETMGKEAR AQRAISEYIVRKGLQE >gi|301349830|gb|ADCQ01000020.1| GENE 81 91048 - 91671 293 207 aa, chain - ## HITS:1 COG:no KEGG:Cvib_0691 NR:ns ## KEGG: Cvib_0691 # Name: not_defined # Def: hypothetical protein # Organism: P.vibrioformis # Pathway: not_defined # 16 189 11 183 203 63 25.0 3e-09 MSTKTQSEFSKFFGPVVATGAERICVRNLKNQFSCFKISKKIHSKETRREIKYFKFLKKR GISSSFIPAFIDNFETKEEIIIEQELITDHPEQNLFAFRVEEFVADASDKQLAKLEQLFR ELYRELKDKNIIISDLHAGNMMIYCDEAGNIKRLIVVDGFGSPEAIPLAKYFRYFGRKKI DRQWAKFRRTFDATWQRRRGGKQTISF >gi|301349830|gb|ADCQ01000020.1| GENE 82 91884 - 92909 306 341 aa, chain - ## HITS:1 COG:ECs4502 KEGG:ns NR:ns ## COG: ECs4502 COG1442 # Protein_GI_number: 15833756 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli O157:H7 # 25 280 25 296 337 102 28.0 1e-21 MTTETEKLPSIVSSVLIPRKDKNVKEALDVFFCFDDAFCLPTGISAFSVLENNKTLPLNV HLVGVDVSDKNLDYFKQLNCSPNSEILFHSLTAKECEKITASRSTLHFPPASFIRIFLPE LFPALSKMLYLDGDTLCVGSLKELADLDLKGKLAAVVLDIKAKDGSSVRHGRRDFNSGMM LINVKPYVESDIAQKTLTVLENNRQYKSPDQMALNDALEDRRVILPKKFNFIQELTVHGE QDQDRPTDSVIIHYANRSKPWTEAFSTRLYQKYYGSSPWKGFSKELVYKKDPNSIRRYAL WHLKNKDFGRFTKLLLIYLSVLIERKKRKLSKKNRTLEIKK >gi|301349830|gb|ADCQ01000020.1| GENE 83 92975 - 94783 811 602 aa, chain - ## HITS:1 COG:VC2600 KEGG:ns NR:ns ## COG: VC2600 COG3083 # Protein_GI_number: 15642595 # Func_class: R General function prediction only # Function: Predicted hydrolase of alkaline phosphatase superfamily # Organism: Vibrio cholerae # 82 600 103 622 622 297 32.0 3e-80 MKFFIYFPLLLGLIFSILSFRFTSPDEFTGAPLWSPVYFFSYSFFYYSFLNLLLAAPFAL ISLVNKKVGKFCAYIVLSVFLIFFVTDSFVYQQFRLHLNIAMLQMTLLGGGQVVSFSGSM ILQICLLMGACFIAALVCFWLANVLSNTQPRFKPSYLLAFTLVGLFVCQGVYGFGFAYHN PYTSKVEENLPLSRPLHFNKLLIKTGLVSREDVYTFKKTDAKGAMNYPLSKLDCSGGEGY NIVFLVVDALRFDMITEQTMPNVTAFSKNAINFKDHYSGGINTRHGIFTLFTGIPGSYWD SSKASKSGSALIKALQTRGYEIGLFASAPLTMPEFNQTVFATLPDARLNSKGNNPIEKDE SAIEDMEKWLTSVPKNKPFFAFLFLDSVHSAIFPETEEFTVFKPYWKEVNQIKLSNDFDR TPYFNRYKNSVFFTDKNLGRALSFLGKNIDIDKTIIVITSDHGEEFNDTGKNYWGHNGNF TKYQAQIPFIVKWPGKASIDIGYRTSALDVVPTLLPRVLGCKNPVSDYSVGKDLFEPSGR NPFVYVSNYSKDAFVEKDRVVLINEIGVLSFLDPAYNPAKDQSVPPYLKQVLEESSRFLK KH >gi|301349830|gb|ADCQ01000020.1| GENE 84 94811 - 95545 102 244 aa, chain - ## HITS:1 COG:RSc2202 KEGG:ns NR:ns ## COG: RSc2202 COG0463 # Protein_GI_number: 17546921 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Ralstonia solanacearum # 1 244 10 255 256 174 38.0 2e-43 MTKNEEHCIARCIQALSWCPKIVVADTGSSDKTKEIAKSLGCAVIEVSFDGFGTTRNRIL DHLTSDWVLCFDADEVCTPELAEEIQETLKNPSASAYLANRLTFLLGKPVLHSGWNPDFR HAVLFKKSEYRYTYRKVHEGFTTSGRVEKLKSSFRHYSFPTVKTLMAKEMQYADLGADAM LAKNKKIGMFRGLGHASWAFCRHFFLRRGFLDGWRGFLIGVSAFHTTFYRYVIAMEKLSE SSKK >gi|301349830|gb|ADCQ01000020.1| GENE 85 95583 - 96074 258 163 aa, chain - ## HITS:1 COG:no KEGG:BC1002_0886 NR:ns ## KEGG: BC1002_0886 # Name: not_defined # Def: glycosyl transferase group 1 # Organism: Burkholderia_CCGE1002 # Pathway: not_defined # 2 153 211 360 364 116 42.0 3e-25 MSSSHARKGFKLLEKYFENTDLPIALAVAGRPISRKDYKNICYVGYEKNMAALYAQTDFS ILASIYEPFGLVPIESLCMGVPVAISENLGCKDYISKAVKEEFNPFSIDSLDNAIRNCLN RKDSMTEASKKGASEKFLVDFSLDKHISKLLEVCELARKENAN >gi|301349830|gb|ADCQ01000020.1| GENE 86 96668 - 97444 -72 258 aa, chain - ## HITS:1 COG:CAC2318 KEGG:ns NR:ns ## COG: CAC2318 COG3307 # Protein_GI_number: 15895585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Clostridium acetobutylicum # 2 226 174 397 406 76 29.0 4e-14 MTLAGFLLTSLPILFCFLLDWKQDRKTLFVTIMFFLIGFTGLLLNGTRGAWLALAVSLPL VAVLYDHSIKKILFLVIFAVGTSLVFFNSPQLQNRAESITSTTMQSNTERLLMWESAYEM FKDHPVFGVGIGQYASKYLNEYKSPEAKEKQNHCHNNFLQMLAENGVAGFIGFCLLFGYI LLSSLKNAFFKCSPYYVLIFGSSLALLLQGFTEYNFGNSAVIKYYWATLGCLLVLAHQTE NKASANSFSLFQHTKTEI >gi|301349830|gb|ADCQ01000020.1| GENE 87 98082 - 98399 441 105 aa, chain - ## HITS:1 COG:SMc01906 KEGG:ns NR:ns ## COG: SMc01906 COG0776 # Protein_GI_number: 15965011 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Sinorhizobium meliloti # 1 90 1 90 90 83 51.0 8e-17 MNKTEMIEAVASETGLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQARTG RNPSTGVEIKIPAAMVPKFTAGKAFKDAVNAPKKPARKGRAKAKK >gi|301349830|gb|ADCQ01000020.1| GENE 88 98563 - 99354 199 263 aa, chain - ## HITS:1 COG:VC0470 KEGG:ns NR:ns ## COG: VC0470 COG2356 # Protein_GI_number: 15640497 # Func_class: L Replication, recombination and repair # Function: Endonuclease I # Organism: Vibrio cholerae # 5 257 3 229 231 153 36.0 4e-37 MNPSLFSFFNRGVASIFALSFGIAAAPNGFCSDVFRGNETFQSFNKAKKILEHQVIFDHR VTLYCNAPFDKDKWISLPSGFTTQVHKKRANRVEWEHVVPAENFGRFFPEWREGSPMCTD NRGAPFKGRKCAEKSNITFRLMQSDMYNLFPVIGAVNAERGNKNFGLLSASAENTFGSCA MKISSNRAEPPKYARGTIARAYKYMAYAYPIFKLSKEQERLMDVWDRQYPVEKWECVRTK RIERIQGNENPFVKQPCIEKKLW >gi|301349830|gb|ADCQ01000020.1| GENE 89 99399 - 99956 178 185 aa, chain - ## HITS:1 COG:MTH1790 KEGG:ns NR:ns ## COG: MTH1790 COG1898 # Protein_GI_number: 15679778 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Methanothermobacter thermautotrophicus # 2 177 5 180 185 203 52.0 1e-52 MQIIETPIQGLLEIQPKVFGDKRGFFLETWQKKRYEEAGIHYQFVQDNRSFSSRGTLRGL HFQKRFPQGKLVSVIFGEVFDVAVDLRRGSNTYGNWFGLVLSAEKCNQLWIPPGFAHGFY VLSETAFFEYKCTDYYHPEDEAGILWNDKDIGVDWPIPPASTVLLSEKDRNGLPFKEISF SENTL >gi|301349830|gb|ADCQ01000020.1| GENE 90 99943 - 100833 350 296 aa, chain - ## HITS:1 COG:DRA0042 KEGG:ns NR:ns ## COG: DRA0042 COG1209 # Protein_GI_number: 15807712 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Deinococcus radiodurans # 5 292 6 293 296 352 60.0 4e-97 MSSWKGIILAGGSGTRLAPLTTAISKQLLPVYDKPMIYYPLSTLIQIGIREIAIITTPDQ QHLFKKLLSDGSQLGCHFEFFIQEKPTGLAEAFLITEEFIKDSPTCLILGDNIFYGNGLI DLAKEAMSSPAGATVFGYRVNDPERYGVVEFDKENRAVSIEEKPEFPRSPYAIPGLYFYD TKVIKIAKSLTPSKRGELEITDINKTYLSEGSLRVKVIERGVAWLDAGTFESLLQAGSFI HAVQERQGLMVGSPEEAAWLNKLINNERLKELAEPHKKNAYGRYLLNLVGNKNANN >gi|301349830|gb|ADCQ01000020.1| GENE 91 100834 - 101895 293 353 aa, chain - ## HITS:1 COG:PA5161 KEGG:ns NR:ns ## COG: PA5161 COG1088 # Protein_GI_number: 15600354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Pseudomonas aeruginosa # 1 350 1 351 352 452 58.0 1e-127 MKLLITGGAGFIGSNFILDRIEKGDKVLNLDKLTYSGNLDNLISVQDNENYSFIQGDIGD KILTQKILSEFRPDAVVNFAAETHVDRSVVDPESFVKTNVLGTSNLLLETLEYWKSLSQE ERTRFRFHHISTDEVYGSLGFKDSAFREDTPYAPNSPYSASKASSDHFVRAFHETYGLPT LISNCSNNYGPRQFPEKLIPLMILNAIEGKPLPIYGNGKNIRDWLHVSDHCGAISLMLER AMPGECYNVGGNSEKNNLEVVAAIINVLDQEMPRSDGKSYSEQIHFVKDRPGHDLRYAID ASKIKKDLGWTPKFNFDQGIRETVLWYLKNAEWVKNVKNGNYQDWIKKNYEER >gi|301349830|gb|ADCQ01000020.1| GENE 92 101895 - 103049 111 384 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860665|gb|EFL83742.1| ## NR: gi|302860665|gb|EFL83742.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 384 1 384 384 721 100.0 0 MAVLHIYTKNGKIYCTAKEPFLGKEKPLPNLPAFSELFSSGVTCVVFKLPSLLKTRNFKL ICFALLSFVLRKYYRQKIPKLLDSFLNKQKEKDLFFIGGSVGAELIKFHYAKKNDVVVEG VETINLIAKSNKALNRLISQVKPKEVKKRIFIVGLFSPELLRYLRKKYPLANIEVRYFDI LRPSRIKEFTWIKNFSLSNDIKISVYDQSTSSKFGIPYAMNKVNTSKLINFLNVKKKYDV CFLAAYSLDREKSLRPLLSALKKANLNVKILLVDYPYSELEDFKVDREIVSYENYLRLMS ESRAVIDLWRLAPGEGYSFRISEALTLNSKIITNRTCILNEPFYDASRMFVFSEGNEINP DAIKHFLISPMKPVDKSIFSLGTN >gi|301349830|gb|ADCQ01000020.1| GENE 93 103859 - 103981 70 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGWTNPFEEMLGFTKAARIHPVQSSQKRVWREKKATIDEV >gi|301349830|gb|ADCQ01000020.1| GENE 94 104802 - 105323 53 173 aa, chain + ## HITS:1 COG:XF0778 KEGG:ns NR:ns ## COG: XF0778 COG1835 # Protein_GI_number: 15837380 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Xylella fastidiosa 9a5c # 3 169 522 703 706 85 31.0 7e-17 MSKALDTVINDPDIKTVVLSARWHYFVNSKKGDFQLLDYKNDSNLITLGKLLSQTISELV MHKKKVIVVLDVPQIPLNPKNCIKSRPLQTTAGNCTFQEDQRRNNDAKINEMIGKVAKNF SSVTVVDASKAICDQGICSVGDGVNSIYYHDDNHLTNKGSDLVVSKILQQGKF >gi|301349830|gb|ADCQ01000020.1| GENE 95 105628 - 107445 743 605 aa, chain + ## HITS:1 COG:VC2600 KEGG:ns NR:ns ## COG: VC2600 COG3083 # Protein_GI_number: 15642595 # Func_class: R General function prediction only # Function: Predicted hydrolase of alkaline phosphatase superfamily # Organism: Vibrio cholerae # 43 605 60 622 622 341 33.0 3e-93 MFNFAFVTINALLLGLGSLCLGLRSIFSAGVLAGWDKGQLLIFSSYTFGLFTLIALVLGS IFLAYPLLRKNKKLLFGITIFLDWIFLIYLAADAFIYPLYRTHLNFAMIQMTFLGGGRIV SFSLPMIFEIAAWILGLGLLSWIFTFISFKLATFKKLSLTALVLVLAGFCCSNLCYSWGF ANFNTRLVSVFDKIPLARPLRMNTQLQKLGLIDKKAIDARKVSLDEHGKLNYPLNPLVCK PSKDYNILFLFVDTLRYDMLTEEVMPNTWKFALKNSRFNNHYSNGNNTRHGIFSLFTGLP GNYWTGSLSSGTPGILLIALQKRGYEIGIFAGAPLNMPEFHKSIFAGISNLPIYPRGKGA VDSDAFAVEDFEKWQSSLKPGSRFFSFIFFDSVHAYSFPKESKYEVFKPYWGSINHMELN NSFDPAPYLARYKNSVRYADNLIQKVLDYLEEKHLLDETIVVISSDHGDEFNDNKLNFWG HGGNFTDAQIKVPLVIHWPGKKPANIEYMTSHLDLVPTLLPEVLGCENPTEDYSVGMSIW KEAGRRNWVYSKGWSRDAFVEPNRIVLINAAGALEFLDKTYRPSKDKTIPAYIPEVLKEN SRYLK >gi|301349830|gb|ADCQ01000020.1| GENE 96 107438 - 108280 249 280 aa, chain - ## HITS:1 COG:CAC2315 KEGG:ns NR:ns ## COG: CAC2315 COG1091 # Protein_GI_number: 15895582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Clostridium acetobutylicum # 1 276 1 275 280 243 45.0 2e-64 MKIWITGASGMLGTELASKLSSHDLLLTGRSDLDISNENAVLNFCKQNKPDTVINTAAFT SVDACETEKDLAWMVNAWGCRNLALACSTVRSRLISISTDYVFEGDSSRPYHEFDVANGG KTVYGQTKFAGEQFIRQLCPNHLIVRIAWLYGSNGKNFVDTMLSLAEKNLSEIKVVNDQI GNPTSTSAVTYLIKDLLRTDYKGVVHGTCEGSATWYDFAKTIFELSGLHQKVVPCTSKEF VRPAPRPSNSRLEKRVIQMLGLAPMPEWKEELAKYLKTSI >gi|301349830|gb|ADCQ01000020.1| GENE 97 108315 - 109766 771 483 aa, chain - ## HITS:1 COG:HI0872 KEGG:ns NR:ns ## COG: HI0872 COG2148 # Protein_GI_number: 16272813 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Haemophilus influenzae # 90 483 74 471 471 267 39.0 3e-71 MANPSISFTDRYSSTLQPLLLLSTDYLAIIIAEWCAVGGRDIVLELLGRKNDWFELNNFY FYLFVPLIFMVFLHWGRTYIRLLSIGEMIRRTFYSVIYAIVVSIVVLFIAGKAPVVSRLF IAFLGCFVFVFVCGSRLLVRYLCNRANILLEPTIIIGSDDTAKRVLNYSATNSFFGIKVV GIIDDKTSGTALEGKYPRLGSTDKAARIILRTGVQNILILAPRMDKRRLYTLIDEIFPLV KNISFVPETEELPVSNMEMHRLYSENLVVISVKNNLSRWYNQFFKRAFDLSVATVGTIAI SPILLGIAIAIKASSPGPAFYAHRRIGKDGIYFNCYKFRSMVVDSDRRLQEYLRANPEAA KEWEETHKLKHDPRVTKIGAFLRKTSLDELPQLFNVIRGQMSLVGPRPIVDEEVIKYDVF FSDYTMVRPGMTGLWQTSGRSDTSYSRRVRLDAWYVRNWNIWLDISLLVKTVRVVLSSRS GAY >gi|301349830|gb|ADCQ01000020.1| GENE 98 109998 - 111449 924 483 aa, chain + ## HITS:1 COG:NMB0782 KEGG:ns NR:ns ## COG: NMB0782 COG1066 # Protein_GI_number: 15676680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Neisseria meningitidis MC58 # 8 466 6 453 459 507 55.0 1e-143 MASKSKTKTAWVCSECGYDAPKWFGQCPSCKAYNTMKEFRIEAESSNRYARVEQAAATSS ARGRTALAGTSDILDLSEIEAKESPRILIGFSELERALGGGFVPGSVVLIGGDPGIGKST LLLQAMCKMVALGQVCLYASGEESPTQVALRAQRLGVNTKGLKFISEIQLEKIEAIIEET SPQWVVIDSIQTLFSEDLSAAPGSVSQVKECAARLTRIAKRKGLGVIFVGHVTKEGAMAG PRVLEHMVDTVLYFEGDPESNYRILRACKNRFGSVNEIGVFGMTDKGLRGVRNPSALFLA ERREGVAGSVTFINLEGTRPILIEIQALVDKSMLPNPKRLTVGTDAQRLTMLLAILHRHV TLSTYDQDVFLNAVGGIKINETASDLAVLIAIVSSMTNQAVSSKTAIFGEVGLGGEIRPV SRGQERIKEASKLGFKRIIVPLKNKASDIPDVEIIGVDNLRDAVKVVFGSNRVKNDEQIY PDE >gi|301349830|gb|ADCQ01000020.1| GENE 99 111490 - 112194 385 234 aa, chain - ## HITS:1 COG:PA0563 KEGG:ns NR:ns ## COG: PA0563 COG3152 # Protein_GI_number: 15595760 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 4 131 2 110 117 77 35.0 3e-14 MFFQWYRYCFSKYFTFQGRASRTEYWSFTIINLLILWAFWFISKLVDIPEDAMSDGIPVF PKDPILALIFGSLYLTFCIAIFFPSLTVTVRRLHDRNHSGFWVIAQLIPLLNLVVLLMLL LPSSPYPNYYGLRAPRFPGEKIPELGADIYGPYGTVAYRPQSNGDETVTQLNQNTPAKGS VMDEIMHENLANADAQAGIEDRPATASPSKSETHRPMRGEESSLVARLNKLSGK >gi|301349830|gb|ADCQ01000020.1| GENE 100 112345 - 113043 524 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860672|gb|EFL83749.1| ## NR: gi|302860672|gb|EFL83749.1| hypothetical protein HMPREF0189_00827 [Burkholderiales bacterium 1_1_47] # 1 232 28 259 259 468 100.0 1e-130 MRTIPKLFFSAALAGSALVMVGCQTVEPYVSYPYEVTAQNARILKRLEVKDVAVDQVRVV KTMDLECAGNNISIPGQEGFKTINGAFSNYWRNALMSDLNQAGILNQKNPKVKIYNLIDS VKIQAEPTFLAWRINMELFSSNGHSMKLDVVYNAPTDGLKNMQDGCRRVAETLNKAVKWS VLKAISDPKFEAMVQPGLDFTPSMKAQSFQTIFLGEDESERWVDKAPKKPEN >gi|301349830|gb|ADCQ01000020.1| GENE 101 113124 - 114104 742 326 aa, chain - ## HITS:1 COG:rffG KEGG:ns NR:ns ## COG: rffG COG1088 # Protein_GI_number: 16131644 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Escherichia coli K12 # 7 307 6 340 355 107 26.0 4e-23 MSNRSAVFGGAGFIGTNLVYQLIEDGQQVFNFDNLSGLGNLLNIAELMQQSRHSFARCDI ANPEEIRQALLMAAADTIYFCITPKNPEEESSLDNFRTFFETVKEWRNGMTDTKIHKIVV VVSEHYKLLGSYGHMYAGLLKLLDGYVADGLPISSLLVPPAFGPFQQPDSPISMIIYRAI EGETIPVVNPEEKVSDLVYVKDVVDAIVIVEKNGKIGGHYHLAGPSCALSNLEAADVICE SLNEELPPPVGRYQALIEEVATAPVTSDISKDEATLVVLGLQGKTSLEDALKKTVNWYLN NPRWYNQSRTRFFYLWQNPETVLKIA >gi|301349830|gb|ADCQ01000020.1| GENE 102 115132 - 115332 146 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCRKKNLPHHSTPSYAFGPPAAGENMFYKVFLLKLFIWVRHKIFYTFRIVRKVKEATNRY IGRGLN >gi|301349830|gb|ADCQ01000020.1| GENE 103 115531 - 115722 110 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860674|gb|EFL83751.1| ## NR: gi|302860674|gb|EFL83751.1| putative glycosyl transferase, family 2/glycosyl transferase family 8 [Burkholderiales bacterium 1_1_47] # 1 63 255 317 317 118 100.0 1e-25 MGKALSEYAQLIMASALADASVKAFQCSQQILENQLLPYKQLILKAAEKGLVRKRSASKF VLY >gi|301349830|gb|ADCQ01000020.1| GENE 104 115751 - 115982 83 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 77 1 77 181 140 100.0 4e-32 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGL Prediction of potential genes in microbial genomes Time: Fri May 13 05:57:35 2011 Seq name: gi|301349829|gb|ADCQ01000021.1| Burkholderiales bacterium 1_1_47 cont1.21, whole genome shotgun sequence Length of sequence - 12601 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 8, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 189 - 250 -0.2 1 1 Tu 1 . - CDS 398 - 529 84 ## - Prom 561 - 620 2.1 + Prom 630 - 689 2.9 2 2 Tu 1 . + CDS 718 - 1464 797 ## COG3471 Predicted periplasmic/secreted protein + Prom 1473 - 1532 2.6 3 3 Op 1 14/0.000 + CDS 1598 - 2386 838 ## COG0688 Phosphatidylserine decarboxylase 4 3 Op 2 . + CDS 2406 - 3284 1116 ## COG1183 Phosphatidylserine synthase + Term 3310 - 3342 5.4 + Prom 3325 - 3384 3.4 5 4 Op 1 . + CDS 3436 - 3591 174 ## gi|302860679|gb|EFL83756.1| conserved domain protein + Term 3621 - 3650 2.8 6 4 Op 2 . + CDS 3661 - 4086 291 ## COG1598 Uncharacterized conserved protein + Term 4322 - 4376 2.5 + Prom 4179 - 4238 3.4 7 5 Op 1 . + CDS 4411 - 5970 1731 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 8 5 Op 2 . + CDS 6035 - 6460 397 ## COG3070 Regulator of competence-specific genes 9 6 Op 1 26/0.000 + CDS 6591 - 6860 324 ## PROTEIN SUPPORTED gi|119898395|ref|YP_933608.1| 30S ribosomal protein S15 + Term 6882 - 6929 8.4 + Prom 6886 - 6945 2.9 10 6 Op 2 . + CDS 7046 - 9220 1981 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase + Term 9248 - 9293 12.0 + Prom 9283 - 9342 3.4 11 7 Op 1 . + CDS 9373 - 10572 1098 ## COG0502 Biotin synthase and related enzymes 12 7 Op 2 9/0.000 + CDS 10628 - 11395 671 ## COG0149 Triosephosphate isomerase 13 7 Op 3 . + CDS 11415 - 11792 498 ## COG1314 Preprotein translocase subunit SecG + Term 11879 - 11948 31.4 + TRNA 11849 - 11933 58.0 # Leu GAG 0 0 + TRNA 11951 - 12035 61.0 # Leu GAG 0 0 - Term 11928 - 11995 10.1 14 8 Tu 1 . - CDS 12232 - 12540 361 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349829|gb|ADCQ01000021.1| GENE 1 398 - 529 84 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLSSFWSVWKNRTVALLVYDLRKKELSFAGTISFYDSLLGKA >gi|301349829|gb|ADCQ01000021.1| GENE 2 718 - 1464 797 248 aa, chain + ## HITS:1 COG:PA4495 KEGG:ns NR:ns ## COG: PA4495 COG3471 # Protein_GI_number: 15599691 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Pseudomonas aeruginosa # 4 245 6 234 236 59 23.0 5e-09 MFRKIMVATVLAAAAIGANAEEFALKPAQKGMEINLPVTILKSFPNDKASITLSAMSEAK DLATAQSEVNKTMAEAQKAIKDFSSMAKLRNGGYYTQPIYTNPKKGEAPVIAGWRARQNL IIETEDVNGVASLVQVGQQSKLALENVSYSLSEEAKAAAQDQLSKDVIDALNKKAESIAV AMKVAPDALRIEKLNFNSFDFAPEGAVFAARAMGANAAFKTVETPVFEAGTSNLSMSVSA VLKTEGAE >gi|301349829|gb|ADCQ01000021.1| GENE 3 1598 - 2386 838 262 aa, chain + ## HITS:1 COG:RSc2074 KEGG:ns NR:ns ## COG: RSc2074 COG0688 # Protein_GI_number: 17546793 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Ralstonia solanacearum # 1 215 1 215 215 241 52.0 9e-64 MKSNSSYPILAKEGWGIIGAAIFITLLVWWLIGGFISFIFFVLLVFVIQFFRDPPRAISQ TPHSVLSGADGRICKVQKVENPYTGKEEILISTFMNVFNIHSNRSPIGGTVEAIYYKPGK FLNADLDKASMENERNAIIIKSDEGPVITCVQIAGLIARRIICHLHIGQEVTRGERFGFI RFGSRVDVYVPLNSEVLVFVGQKVRAADTVLALLNPQEEEKPETPVEAPAVEAVEVTEVA ATADAAPAAETKTTEEKTQQQA >gi|301349829|gb|ADCQ01000021.1| GENE 4 2406 - 3284 1116 292 aa, chain + ## HITS:1 COG:RSc2073 KEGG:ns NR:ns ## COG: RSc2073 COG1183 # Protein_GI_number: 17546792 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Ralstonia solanacearum # 1 277 1 281 291 289 54.0 4e-78 MPLQRDKAKPFHARRNFRPHPRVTPKAIVRERIDTVRKKGIYLLPNLFTLSSLFSGFYAV IIAMAGDFEKAAIAIFVSMILDGCDGRVARLTHTQSSFGVQFDSLADMCAFGMAPAMVVY QWALHDLGRLGWAAAFVYCAGAALRLARFNANVDVVDKGFFQGLPSPAAAALVAGFVWLA VDQRMPVNSDWLPWLAMVITVYAGLTMVCNAPFYSGKSFHYGKSVPFWVLIAAVILLFVL STDPALMVFILFCLYALSGFAYQFYLWYTGQPNPVIPHRSEVELDEPADQVK >gi|301349829|gb|ADCQ01000021.1| GENE 5 3436 - 3591 174 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860679|gb|EFL83756.1| ## NR: gi|302860679|gb|EFL83756.1| conserved domain protein [Burkholderiales bacterium 1_1_47] # 1 51 1 51 51 90 100.0 2e-17 MKYGQFIKALKDKGVKVEDRTRHLKLSYGGKQTGCKRHPAEGYPLMLLAKF >gi|301349829|gb|ADCQ01000021.1| GENE 6 3661 - 4086 291 141 aa, chain + ## HITS:1 COG:Z2281 KEGG:ns NR:ns ## COG: Z2281 COG1598 # Protein_GI_number: 15801705 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 EDL933 # 5 136 10 140 145 67 30.0 5e-12 MRFSYPCEVSRDSETGQVILECKNPSAFAFGDSLEEAVKEMHSLLLDCVSDYIDEGKIFP TVTKPAKKNEVSVELTPSETVKVLFLNSMVETKTKPIQIARRLGIAKQEVTRILNPRQKT KIDTLEKAIEATGKKLIYSIA >gi|301349829|gb|ADCQ01000021.1| GENE 7 4411 - 5970 1731 519 aa, chain + ## HITS:1 COG:RSc2072 KEGG:ns NR:ns ## COG: RSc2072 COG0119 # Protein_GI_number: 17546791 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Ralstonia solanacearum # 6 512 3 512 513 631 65.0 1e-180 MTTARDKLFIFDTTLRDGEQSPGASMSPQDKLRIAKQLEFLGVDVIEAGFAAASPGDFES ICAISKVIRNSTVCSLARANPSDVRKAGEAIAAAPRRRIHTFIATSPLHMEKKLNMTPEQ VIFRAVEAIRIAKEYTDDIEFSCEDASRSQPEFLYRIIEAAIREGATTINIPDTVGYAVP SEFGAFVRDLREHVYNSDQAVWSVHCHNDLGLAVANSLSGVVHGGARQIECSINGLGERA GNCALEEVVMAVKTRNDFFKLGVDINTRQLVPTSKLVSSVTGFPIQPNKAVVGSNAFSHA SGIHQDGVIKHRETYEIMTAEDVGWTSNRMVLGKLSGRSAFRQRVRELGIPTKSEAEIDD AFARFKDLADRKVQIFDEDIQSLFDAKNIQPQEISFVSLKQESQTGKTPVAEVTYMDHGE QRVGRAEGNGPVDATFQAIESCAKSGAELLLFSINALTKGAEAQGEVTVRLSVGGRVVNG NGSDPDVLAASAKAYLDALNKLAKVEERKNPQFDHEPTP >gi|301349829|gb|ADCQ01000021.1| GENE 8 6035 - 6460 397 141 aa, chain + ## HITS:1 COG:CAC2476 KEGG:ns NR:ns ## COG: CAC2476 COG3070 # Protein_GI_number: 15895741 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Clostridium acetobutylicum # 1 89 1 88 114 60 32.0 7e-10 MASDAEMASYIADMLNPLGEVRIKRMFGEYCFYVNEKPVGFLCDNEVLVKTNAEMRALHP EMPQKLLFDGAVNPMWLIDNPDDREAVERYFGIAAKMLPTPKPKKPRALKEPQKTRKYRD GEGSPLNDPAVMGDDMRENSD >gi|301349829|gb|ADCQ01000021.1| GENE 9 6591 - 6860 324 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119898395|ref|YP_933608.1| 30S ribosomal protein S15 [Azoarcus sp. BH72] # 1 89 1 89 89 129 71 1e-29 MAQTTAQKAEIIEKFAQSKGDTGSPQVQVALLTARINELTEHFKVNPKDHHSRRGLLKMV SRRRKLLDYLKGRDLAAYKALIEALNLRK >gi|301349829|gb|ADCQ01000021.1| GENE 10 7046 - 9220 1981 724 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 3 711 1 709 714 767 57 0.0 MTMFNKVVKSFKYGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFP LTVDYIEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVL SVNPEVDPDIPSMIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLV VAGTERAVLMVESEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGKPLWDWAPAER NQQLVALINQIVGNRIHEAYEHRSKQDRNECLRAIYDDVNEKVNAAVEVGELAEIGENEV ANILFEMEAAHVRGKILSGEPRIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVV TTLGTKQDEQIVDGLTGEQRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALTA VLPNEEDFQYTMRVVSEICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGN KFAVLTDILGDEDHLGDMDFKVAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHI LGKMHEAVEGPKTELSPYAPRLVSFKINPDKIRDVIGKGGAVIRALTEETGTQINIEDDG TVTIASVDEAAGAEARRRVEELAATVEVGKVYEGKVQRLLDFGAIVQVLPGRDGLLHISQ IAHERVNQVSDYLKEGQIVRVKVLEIDDKDRIRLSMKALIEKPEHKEKKEEAAQQDGNPD IIKG >gi|301349829|gb|ADCQ01000021.1| GENE 11 9373 - 10572 1098 399 aa, chain + ## HITS:1 COG:CAC1631 KEGG:ns NR:ns ## COG: CAC1631 COG0502 # Protein_GI_number: 15894909 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Clostridium acetobutylicum # 19 340 20 316 350 211 39.0 2e-54 MKLNGNSLDEVLMKETLSDEDIVFLLGLTEPEDCKKLQEAAYKKTTELMGNKVYYRGLIE VSNVCTVDCRYCGIRKDNYGVHRYTLTKDEILGAAMFAAENGYGSICLQAGERNDPKFIS FISDCLREIHRKTVSESLLDGLGITLSLGDQTKEVYEEWAEASGNRKNLRYLARFESSNH ELFDFLHNVPHKKSKHLEHRLQCLQWLKECGYQVGTGVMIGIPGQTLEDLCSDIRLFQKL EADMIGMGPYLMSEGGDLKSLGQTENKKLFQLSLNMIAITRLVMGNINIAAATAMQVLDP QGRETAISYGANVVMPNLTPLQYREGYQLYDKKPGLKDDPETFGLKLEERIQSKGREVGW NLSGSSRKWLNRTGNSQEGYDGKKSAGEQSVVWIKSTDS >gi|301349829|gb|ADCQ01000021.1| GENE 12 10628 - 11395 671 255 aa, chain + ## HITS:1 COG:RSc2064 KEGG:ns NR:ns ## COG: RSc2064 COG0149 # Protein_GI_number: 17546783 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Ralstonia solanacearum # 2 248 4 248 248 236 54.0 3e-62 MRRSLVIANWKMNGSVDFIDQWTNVFTTFSPVNTELAVCPPFVYIRYLQQKFLTSALDIN VGAQDCSVHESGAFTGEVSAGMLADVKCPWVIVGHSERRQYHGETNEIVAAKAKIAIEHG LRPIVCVGETLEERESGRTSDVVIGQLNAVLDAIGPETLVTGAVAYEPVWAIGTGKTATP QQAQLVHAELRDSVESRDSQAASALRIIYGGSVKPSNAAELFACNDIDGGLVGGASLKAA DFYAIAQAASGIGLI >gi|301349829|gb|ADCQ01000021.1| GENE 13 11415 - 11792 498 125 aa, chain + ## HITS:1 COG:RSc2063 KEGG:ns NR:ns ## COG: RSc2063 COG1314 # Protein_GI_number: 17546782 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Ralstonia solanacearum # 1 69 1 69 115 77 69.0 5e-15 MHLLITVAVVLQVISAVAIIVLVLLQHGKGADMGAAFGGGASGSLFGATGSANFLSRSTA VASTIFFCATLALTFGGQVRKAPAAGGVLSTVTTEQKAPAQPTPPVPATNTSDFTDKPAQ NQIPR >gi|301349829|gb|ADCQ01000021.1| GENE 14 12232 - 12540 361 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 102 494 595 595 184 90.0 1e-45 MQFIATGLSLMVRSRIRSYMRENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEV AGKKIKYFEALDVRVPGAGPETPEEVPEEPETEPLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 05:58:05 2011 Seq name: gi|301349828|gb|ADCQ01000022.1| Burkholderiales bacterium 1_1_47 cont1.22, whole genome shotgun sequence Length of sequence - 30451 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 23, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 279 180 ## COG5421 Transposase 2 2 Tu 1 . - CDS 643 - 828 259 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 - Prom 848 - 907 9.3 - Term 1071 - 1109 2.3 3 3 Tu 1 . - CDS 1310 - 1489 218 ## gi|302860689|gb|EFL83766.1| conserved hypothetical protein 4 4 Op 1 . - CDS 1756 - 1941 226 ## gi|302860690|gb|EFL83767.1| toxin-antitoxin system, antitoxin component, Xre family 5 4 Op 2 . - CDS 1905 - 2198 62 ## gi|302859148|gb|EFL82231.1| toxin-antitoxin system, antitoxin component, AbrB famil + Prom 2423 - 2482 1.6 6 5 Tu 1 . + CDS 2520 - 3794 603 ## COG0501 Zn-dependent protease with chaperone function + Term 3817 - 3859 -1.0 - Term 3803 - 3847 -0.6 7 6 Tu 1 . - CDS 3880 - 5493 1034 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 5684 - 5743 7.4 + Prom 5648 - 5707 4.9 8 7 Tu 1 . + CDS 5754 - 6515 993 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 6546 - 6586 4.2 - Term 6534 - 6574 4.2 9 8 Tu 1 . - CDS 6672 - 6803 64 ## EUBREC_2584 hypothetical protein - Term 6900 - 6932 4.3 10 9 Tu 1 . - CDS 6941 - 7531 608 ## gi|302860694|gb|EFL83771.1| hypothetical protein HMPREF0189_00849 - Prom 7652 - 7711 6.1 + Prom 7529 - 7588 2.8 11 10 Tu 1 . + CDS 7703 - 8596 985 ## COG3058 Uncharacterized protein involved in formate dehydrogenase formation + Term 8614 - 8647 2.0 12 11 Tu 1 . - CDS 8637 - 9350 593 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Prom 9607 - 9666 8.0 13 12 Op 1 1/0.000 + CDS 9756 - 11816 1512 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Term 11853 - 11883 2.7 14 12 Op 2 . + CDS 11911 - 13551 178 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 15 12 Op 3 . + CDS 13505 - 14380 269 ## gi|302860699|gb|EFL83776.1| hypothetical protein HMPREF0189_00854 - Term 14709 - 14744 7.1 16 13 Tu 1 . - CDS 14780 - 15670 680 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 15763 - 15822 5.8 + Prom 15832 - 15891 3.4 17 14 Op 1 2/0.000 + CDS 15913 - 17469 1564 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 18 14 Op 2 . + CDS 17526 - 18410 146 ## COG0583 Transcriptional regulator + Term 18611 - 18678 18.5 + TRNA 18583 - 18658 55.4 # Glu CTC 0 0 + Prom 18895 - 18954 6.3 19 15 Tu 1 . + CDS 19030 - 20169 473 ## COG1373 Predicted ATPase (AAA+ superfamily) 20 16 Tu 1 . - CDS 20311 - 22224 1209 ## Aave_2242 hypothetical protein - Prom 22279 - 22338 4.0 - Term 22387 - 22424 2.2 21 17 Tu 1 . - CDS 22479 - 23063 715 ## COG1592 Rubrerythrin - Prom 23290 - 23349 6.2 22 18 Op 1 . + CDS 23602 - 24627 499 ## COG4643 Uncharacterized protein conserved in bacteria + Term 24655 - 24704 4.0 + Prom 24633 - 24692 1.5 23 18 Op 2 . + CDS 24712 - 25734 733 ## COG0714 MoxR-like ATPases + Term 25807 - 25860 13.1 + Prom 25791 - 25850 1.9 24 19 Op 1 . + CDS 25870 - 26823 531 ## gi|302860708|gb|EFL83785.1| conserved hypothetical protein + Term 26830 - 26888 4.1 25 19 Op 2 . + CDS 26896 - 28533 758 ## ASA_P4G149 hypothetical protein + Term 28627 - 28663 -1.0 26 20 Tu 1 . + CDS 28698 - 28934 84 ## gi|302860710|gb|EFL83787.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein + Term 28950 - 28985 -0.6 + Prom 28954 - 29013 2.1 27 21 Tu 1 . + CDS 29093 - 29311 128 ## gi|302860711|gb|EFL83788.1| hypothetical protein HMPREF0189_00866 + Term 29312 - 29344 3.0 - Term 29166 - 29211 -0.3 28 22 Tu 1 . - CDS 29348 - 29536 109 ## gi|302860712|gb|EFL83789.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein - Prom 29580 - 29639 4.6 + Prom 30070 - 30129 5.8 29 23 Tu 1 . + CDS 30201 - 30450 90 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein Predicted protein(s) >gi|301349828|gb|ADCQ01000022.1| GENE 1 3 - 279 180 92 aa, chain - ## HITS:1 COG:MA2942 KEGG:ns NR:ns ## COG: MA2942 COG5421 # Protein_GI_number: 20091761 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 22 86 170 234 521 65 44.0 3e-11 MQRYFSLMRSYLQEDEDNKIILALDSTSISSYSTNLTHIEYGKNKDDDALPQLNVLFLVD QKSGLPIFYRFYDGNVPDVSTIRHTIADQALL >gi|301349828|gb|ADCQ01000022.1| GENE 2 643 - 828 259 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 61 1 61 190 122 98.0 1e-26 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFDETF L >gi|301349828|gb|ADCQ01000022.1| GENE 3 1310 - 1489 218 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860689|gb|EFL83766.1| ## NR: gi|302860689|gb|EFL83766.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 59 1 59 59 105 100.0 9e-22 MLSYPTEISKDGDFFLVSLRYFYGEEPVTQGKKYEEALAMAADWLLSVATIAKEKQDEL >gi|301349828|gb|ADCQ01000022.1| GENE 4 1756 - 1941 226 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860690|gb|EFL83767.1| ## NR: gi|302860690|gb|EFL83767.1| toxin-antitoxin system, antitoxin component, Xre family [Burkholderiales bacterium 1_1_47] # 1 61 1 61 61 107 100.0 2e-22 MSMFNPPHAGMLIKDVIETKGISATELPCALKLQDSTVAKLLNGELNISEEMARRIEEVL T >gi|301349828|gb|ADCQ01000022.1| GENE 5 1905 - 2198 62 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859148|gb|EFL82231.1| ## NR: gi|302859148|gb|EFL82231.1| toxin-antitoxin system, antitoxin component, AbrB famil [Burkholderiales bacterium 1_1_47] # 1 77 1 78 91 76 55.0 5e-13 MSTLKLRQIGDTVVLILPKTLLEQLSAKSGDSLKYSFEDRKLVIKPKRKLRRLPKYDLSG LLLEHKQIMVRLEAEYQTVSYRKFRQCQCSIRLMPEC >gi|301349828|gb|ADCQ01000022.1| GENE 6 2520 - 3794 603 424 aa, chain + ## HITS:1 COG:RSc0941 KEGG:ns NR:ns ## COG: RSc0941 COG0501 # Protein_GI_number: 17545660 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Ralstonia solanacearum # 173 403 175 410 418 112 28.0 1e-24 MNDALIFESLFLIFLFANIALGFYLYLREAKSIREHRNKVPHVFSGLVSLDAHKAASDAR LHADKVNEIRHLSNLVLVLLLTFGGGITWFSSLLTNQLGNGLFTQILFALCVGLAFLVIN GLFFAIAKNSEKNSSYLILRNFGSTRSKVSNIVFFVLIVSAVLTCWSVGASYWWILAWVA SAVLVIGASVVSRSIAYSAHPLSDGELKSRLDQFLGKVGFESKGVFVANSDRLGSGSGVF ISGLGTNKKVVLTESLIERLNPSEIEAMIANEIGQYKYQIGFRAYLPYLILSFIFFGLLS YFSTKPWFFQGLGVSSGFDEKHGVVLVLFALTAYVFLFPLIPLRNALLWKAEENAERSSV KLVDWNAMISGTAKFASDKAGSVTLDPLYLVFNSTRTDSMHRIMDIQHLAPRHTRQRDSW LPNA >gi|301349828|gb|ADCQ01000022.1| GENE 7 3880 - 5493 1034 537 aa, chain - ## HITS:1 COG:DRA0018 KEGG:ns NR:ns ## COG: DRA0018 COG0737 # Protein_GI_number: 15808028 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Deinococcus radiodurans # 37 533 25 516 524 265 34.0 1e-70 MLSPCLPFHTRYIFASFAAASLILISGCQSIHDKKEITVEILHTNDMHSHFAGSKNGSAC ITESYCEGGYGRVAEYVKEVKERNPNAIFLDAGDQFQGSLLYVNYHSPLVGKITNKMQYD FATFGNHEFDEGCKALSDYAKNADFPFLAVNLKPAPGCPLSKNNIAPFTVIDRPDAKIGI IGLANPDVVNQSKACKDTKFVNPFKAVKESVKALQTQKVNIIIVLSHLGLPFDEELAKNV SGVDLIVGGHTHDYIGPGSPLGPYPIVERSPSGKPVLIVTTSGEAKFLGHLEMNFNKEGI PTSWNGEPVRLGKAGGSPEITKIINQAAEPVIKRNSTVVGTNLVKMRDGLDPCREGDCLS AMVTTDAMLDYARPKGAVVALINGGNFRAALPVGKITQGDIDNLLPFKDKVLLRKYTGKQ LFEAVEHGVSDVDGIGPRMIQASGLRYSYCPTAPVGHRVRSVEVQDRNGKWNPLDDNKVY VAAVGAFLASGGDDHKALADGIKISNSGPLVADALKVYLKKKSPINQTPEPRISTLK >gi|301349828|gb|ADCQ01000022.1| GENE 8 5754 - 6515 993 253 aa, chain + ## HITS:1 COG:STM0830 KEGG:ns NR:ns ## COG: STM0830 COG0834 # Protein_GI_number: 16764192 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 10 252 4 246 248 179 38.0 6e-45 MFRRNLLAFLCALSMLPVSASFAKSPTIEDGVLLVGTDSSFAPFEFLAEDGKNFTGFDMD LIRAIGKELGYKVVVQNMGFDATVPALRTGIVDAVIAGMTINEKRKKFVDFSDPYYTSGL IIMVPSSDTTTKSIKDLEGKKIGAQVGTTGMFRAEKVPGAKVVTFANAAETFLEFQNGGV DAVIQDFPVVAYYVAQGGNKGRLVGPKMEAEEYGIAVTKGNKELVAQINKALASLKKSGE FQRIYKKWFGEEN >gi|301349828|gb|ADCQ01000022.1| GENE 9 6672 - 6803 64 43 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_2584 NR:ns ## KEGG: EUBREC_2584 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 2 40 22 60 88 66 71.0 2e-10 MLCNDMGLSMTAAFTIFAKTVTREKRIPFEVSADPFYSETCNA >gi|301349828|gb|ADCQ01000022.1| GENE 10 6941 - 7531 608 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860694|gb|EFL83771.1| ## NR: gi|302860694|gb|EFL83771.1| hypothetical protein HMPREF0189_00849 [Burkholderiales bacterium 1_1_47] # 1 196 1 196 196 407 100.0 1e-112 MQSIVSRRKILIASLGAAAVGLTRTAQAAPANVPSIWDGKKMYDSFLRDGTGFSFPHKPN APVAVVAFDTQCPDCMRLFTRIKPLLNDVDVIFYPISFMNIHSEPQGTTILMSKDPAKTF EEQHEHFKDPDFRGIRYDVSKLPEDLRNKVWTNTKLHRRSGCRAVPYGVFKNSKGEYVPF DENLTTEELKKVFEMN >gi|301349828|gb|ADCQ01000022.1| GENE 11 7703 - 8596 985 297 aa, chain + ## HITS:1 COG:SMa0009 KEGG:ns NR:ns ## COG: SMa0009 COG3058 # Protein_GI_number: 16262457 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in formate dehydrogenase formation # Organism: Sinorhizobium meliloti # 184 265 187 268 306 60 33.0 6e-09 MTKSSRQAAIAGYLKRDDGVDWKGLTDYANSMYDVRDELEIADVEDNFDTETAQKAIKSK TPYLTLRPLQIIPAEFRKDLQKLQDAFIEKGVINVDEQVAKLKALDWNKLTDATIKLAGE DPTAFYEVATKEVLGEEADEDMMAVIAGLLLNVLRRYFRNLGEDMTHELSKVDEAKSGDA PLGCPTCGAPAAISSVTEGTEGTSNNRYLFCSCCGTQWPFERIRCALCGNTNSNKLKYVY ADEDPAHRMHVCEDCGGAMATVFQDALKGPMDYDIELITTGVILSMYEDSLENENKQ >gi|301349828|gb|ADCQ01000022.1| GENE 12 8637 - 9350 593 237 aa, chain - ## HITS:1 COG:CC0325 KEGG:ns NR:ns ## COG: CC0325 COG0744 # Protein_GI_number: 16124580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Caulobacter vibrioides # 35 225 28 212 229 156 41.0 3e-38 MFNRSKTNKYSWTAKLFLCALLTFFLFELQYVGRILLFDFVNPSSSPYIRAEQERLLEEG KHPVLYQWVDYDQISPYLIRAVVAAEDADFMHHNGLRWDAIKTAAERNLLSDKRAPGGST LTQQTVKNLFLSHDRSYFRKAQEIILTPIVEAIWGKTRILEIYLNIAEFGNGIFGAQAAA RYYFNKNAANLSRAEAIRLASILINPKKYQFVKSAPLINRRVNRISHDLNLVQIPQR >gi|301349828|gb|ADCQ01000022.1| GENE 13 9756 - 11816 1512 686 aa, chain + ## HITS:1 COG:CC2194 KEGG:ns NR:ns ## COG: CC2194 COG1629 # Protein_GI_number: 16126433 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Caulobacter vibrioides # 21 487 21 532 733 148 25.0 4e-35 MKPFTLTAIAASVLATVTYPSVQAQETPSNSETVVTAPVVVTATRTEKKLNEAPSSLVVI TDGQLEQDNPKTLGDALLDIPNVMMEAPDSPVFTRISIRGSDSDQITYLIDGVRQDNYTM SGNRPAFMFADPEMIKQIEVRRGGGSSLYGNGGIGGTIAVTTKTAADLLKPGRDFGAKLK AGYNNDADEFGQAAWLYGRKGPVDAVIGFSHRDGGKVVSSSNGKRSKIPRNAQYDSFTSK LSFTPSDDSIFSIGYNYDENKLDQGRTDNEAKYRLKQHRLSGSWEYSSGDWVDLVVNMQY MKLDNKFDGTSYNDEAYFKDKFDSYSINTQNTSVFEFGGTHSLTYGFDTSLNKQKATDVY GRPDRSRPKSKGYDAGLFIQDEYAINPYLTLTPVLRWSYYNRKPTTDNNDKFGLASRSDS KVTPGITLTLSPSKQLSFYASVQTGYRPPFLDELYTSIEYPEFGMYSVVLPNPDLKPEES INVEIGVNGDYKSLFSDSDRFVFHANVFRDRVKNLINAGATGDMDFTDDGDMILYYSIDN VGKALKTGFEASADYYPGNADFHLSYGYLHAEDKNTGEKIPGLTPMQATLRAGYTYKPWN VNGWYRMRLFKGGKSNLETARNSGEYKQLGGFATHTLGLTWKPQIKDWADFTLTFSVDNI TNKKFRYLNGGYGVGRSYRAWLSATF >gi|301349828|gb|ADCQ01000022.1| GENE 14 11911 - 13551 178 546 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 356 514 24 194 311 73 29 2e-12 MWFLLGVVIAAYLINIKLAVALNDWNGRFYNALQVVNKEEIFSCLYDFILLCSAIILVLV TADYLQGRAALIARRELTQRFFNRWLSENAPFYCLRLENKEPDNPDQRIAEDIRDAVSVF FNLCTSFFNSVLMIGSFSVILWNLSGPLTLFGFSIPGYMFWVCLIYTFLETLITHLIGRK LKRLNFDSQKREADFRSSLLAKRTHAESIAGLKGTSVERLELNGKFSSLLNVLIEILRKK RNLEYFSVGTGQVTHLTPIFFSLPAFFAGTIELGGLMQIRGAFIDVARSLSWIAMSYQQL ARFAATYERLSTLHYAIEEINEKHKQTVCYSTSTKGLKADFYLCIPERSQDERLKVKLTL KQGQLTVLQGPSGSGKSSILRVLAGFDRFASGMVESPSQKLWITQQPYLFKETLKANLTY PELPDKVSDSKALALLEKVGLGRLEPFLNHTVDWQHRLSGGEQQRLMLARMLLLKPQVLL LDEATSALDETTAEAMTEMLRLELKNSAILLVTHQSVLVRHADQVLQMKDFYVNTRKKRL CPVSQI >gi|301349828|gb|ADCQ01000022.1| GENE 15 13505 - 14380 269 291 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860699|gb|EFL83776.1| ## NR: gi|302860699|gb|EFL83776.1| hypothetical protein HMPREF0189_00854 [Burkholderiales bacterium 1_1_47] # 1 291 1 291 291 580 100.0 1e-164 MSTHGKNVFVPFPRYENAVFVGDSAIEALAELKIFGKALIGGELPNMQYFHPNEKLLECT SCVMQDQRVLTTAIRRGEIEYVLLENNPDSDINPALLAPKLKAEGVRIKILTIFQDPTET LLEIGRVFGEETRAGRIVREYRLQQEQLKRYSPLSPQSILALLAIRHPLDDRIFLFALSD ASELSKDLYPALCAHNPIKEADYKTVIPGLVEIEDLSFFLAFNPDWIAITGDYLGIQRAL AQFQIHERIVPDALAKNKVFTVPYYGKPLAVRRPRILKLWREAAETAARVK >gi|301349828|gb|ADCQ01000022.1| GENE 16 14780 - 15670 680 296 aa, chain - ## HITS:1 COG:BH2748 KEGG:ns NR:ns ## COG: BH2748 COG2249 # Protein_GI_number: 15615311 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Bacillus halodurans # 95 192 13 108 198 89 44.0 9e-18 MLKINRSQCHGGYMKLNLLLAVLLSSLSVACYAADAVSGATPNHAAPGSQIKNVDAVTSA SIVPQKLRISAKATGFTDSKAKKVLFVVGDPRFDQSLEGFLVNTAANFFLKKGYEVEIRD LYKIRFNPVITPENFYHAKDGFGQTPDDIKPEQALVSKADYIIFCYPNWHDSPNAITKGY MERVFSKKFAYQDTPKGLEGLLKGKGIYSIMNAGWLGGGQGNVGDGIGKLDTVWDKYLGA YKVVDDDTAGFWGAKNLGRFVNDQSPSNLDPQYQEKLQKLASVLDSRLERDFFKNK >gi|301349828|gb|ADCQ01000022.1| GENE 17 15913 - 17469 1564 518 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 5 515 36 501 506 133 28.0 8e-31 MKSFKLKTFVSILAFASLSSISFATQVVDTEIVIVGGGLSGVAAAAKAVELGKKPVLLEK TAILGGAGNFPEGSLGLGTKYQKEHGITWDIQKNIDRFLDFNHYRTNPAVIRQLIGKSGE TIDWVVDKGVEIRGIRTLWPQGESYNCWHLFKGGASTVISKLSDQIKAQGGQILMQTPAQ KLITKDGKVVGIEAVNSKTGEKYIINAKKVILATGGFAANKGMIEKYVTDSSDLSVSEPI RLRSAAGDGRTGDGINMAVKVGAAIAGMENVVGNAPYLPHEPLINQFNGDTYLKHGRCAL VQPWLWVDRNGERFYNESRGSLFTDVYAAMTQAGGLMYTILDQKKYDRLINEGALIPFNA IVPIGTKLTELAKTFEVGMKNGWAFKADTIDDLALQIGVPAENLKKTMKQLNEYAANKKD PDFGRKPEYLESFDLNKGPYYALKGIRTYFLTLGGVRINKDFQALNAQGDVIPNLYVVGA DMGGLFESTDDLKVEGATSSFALTSGRLAAEKAVQALN >gi|301349828|gb|ADCQ01000022.1| GENE 18 17526 - 18410 146 294 aa, chain + ## HITS:1 COG:SMa0757 KEGG:ns NR:ns ## COG: SMa0757 COG0583 # Protein_GI_number: 16262857 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Sinorhizobium meliloti # 1 247 6 258 310 90 31.0 3e-18 MDLNLLQVFIELYNFRSLSKAARKLDLSQPSVSRKLQILREHFSDPLFITDGHKLVPTVK AEKLYPDVAKAFNSFQSVLNQSVVRGPKKLTIACSDDFEFFVGPRIVEGFRKVLPGVLVI FRQTNTMLAEKTLQERKADFCITGGGTHSSQVAREGFGLHQDVCLYCGKDGLKKPLSLEE YLEREHVAVHFGGAEGVSDEILRRGNRKRKLVAITTHYSGVERYILGTERIALVPLFFAK ILVQTFPSLAYCRIPFNATQDQVELSYRKDLLKEPFYRDCRDVLSEILKTVDWN >gi|301349828|gb|ADCQ01000022.1| GENE 19 19030 - 20169 473 379 aa, chain + ## HITS:1 COG:FN1382 KEGG:ns NR:ns ## COG: FN1382 COG1373 # Protein_GI_number: 19704717 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 1 372 26 400 402 298 45.0 1e-80 MRRSGKSSLLNLYRNWLVNEKKIEEKNIVYINFESLKYANLTEYQALYDYVCGISSQAGT KVYLLFDEIQNVKEWEKAVNALRVDCDCEIVLTGSNARLLSGELATLLADRYVEIQMFPL SFDEFLEFRKSSGEDIHKSFDAFLRFGGLPGLHELQASPRATSQYLSDVFNSVLLKDVVS RNNIRDSELLNRIIQFIFDNVGSTFSAKNISDFLKSQGRKLGVETIYNYLDYLKNAFVIE RVKRFDLKGKKYLETQEKIYAADVGIRNSVLGYRPSDIAGILENLVYLNLRQKGFSVSVG KTGTLEVDFVASKEEAVLYVQVCYQLTPENLEREVAPLRKIKDNYPKLLLTLSDLMTGDI EGIKVRNLIDFLGEPIAKF >gi|301349828|gb|ADCQ01000022.1| GENE 20 20311 - 22224 1209 637 aa, chain - ## HITS:1 COG:no KEGG:Aave_2242 NR:ns ## KEGG: Aave_2242 # Name: not_defined # Def: hypothetical protein # Organism: A.avenae # Pathway: not_defined # 5 621 46 690 694 514 42.0 1e-144 MKILSALLVPILLLSGCASVTVSNINSQEYLVQRRGDVISQGRLSDPTNTVLTALGLSDC ENRMQYCINSVGDSSVTDNESKISALAEMWLFKAMRAQKDAQVLKDAGEFQDENKLNAEL LNDYIQTAKYSYAYLFFSGRKISDRALEDRQTQVKDYYNFAVQNVIEQLYRATKGKALTD FPVREGKWNIYIKNPEQLSEHAETVKELIPDTVLSFKGLKNQYSADGLGARMVLSTDDPA KEKDQPWRLMPYSSVTAMISFPGKSLNQILTADDVVVSTYDPSFVQSVKIGKTVVPLSAN FSGAYGLWLANSDFASNALSTIFGHGNIIDKPTVYLMRPYRKDLRTIILIHGLASSPEAW VNTANEIMGDKLLRDNYQIWQVYYPTNVPLLINRQEIAEAINKTIDHFDPSRTNQASKNI TLIGHSMGGILTRLLVSDSGNTIINALEQKYPQASDKINQMDPKFKSILRFKPLQGVTTA IFLAAPHQGTPYADASWARYLASFVKLPLSIVNKLGEMTLMIFGQDLPREINMTGVDNLS AKDPTIRVLAKLPISRNVTYYSIIGRENADGPLEESSDGIVPYWSSHLEGAASEKVIVSG HSVQETPEAIIELRKILRNQLVDQNISQSTKAVKANR >gi|301349828|gb|ADCQ01000022.1| GENE 21 22479 - 23063 715 194 aa, chain - ## HITS:1 COG:MTH756 KEGG:ns NR:ns ## COG: MTH756 COG1592 # Protein_GI_number: 15678781 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Methanothermobacter thermautotrophicus # 11 187 6 190 197 147 39.0 2e-35 MAETKSVAGTQTEKNLATSYLNESQSYARYTFYAQKAVKESYFPIGYAFNETAANELRHA KIFLNFLPGGKLVAEVPTDSVAIGSTEDNLKISIDEERYEGVKAYQAYAEVADKEGFPVI ASHFRAIAQIEQHHLDRFQTYLDQLQKGTIWKREKPIHWQCLVCGYIYEGTEPPVKCPAC DHPYQHYIGLDIYQ >gi|301349828|gb|ADCQ01000022.1| GENE 22 23602 - 24627 499 341 aa, chain + ## HITS:1 COG:STM0901 KEGG:ns NR:ns ## COG: STM0901 COG4643 # Protein_GI_number: 16764263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 46 329 32 309 322 80 27.0 6e-15 MELTTHKLRISQSTVNTILSRAQGHYKSILLSAGADETIFKTKNLECPWCAGVDRFSYTD KFGKGDSFCRHCGYHSGVDLLMKIKNFGYVDALRFMARFLNLPIHEEKIYRVTKTHEQAS PVEEVWAASHALGEKDSAYAYLRSRGLKKCFPAALRASNRLRYAQLSEDGRSWDHSFYEG LVAEIVNSEGHRVSLHRTYLERGRKAPVKAVKKVLGKELSGCAVRLAETDESGVLGLAEG IETALSASELFGVPVWSVVAAFNFRNFVPPKSVRRIIIFGDSDKNFIGQREAYAGAAEIK QRHPDIEVEVRLPEQSGSDWNDVLMAQNQTSFGAEACLTKT >gi|301349828|gb|ADCQ01000022.1| GENE 23 24712 - 25734 733 340 aa, chain + ## HITS:1 COG:AGl2407 KEGG:ns NR:ns ## COG: AGl2407 COG0714 # Protein_GI_number: 15891317 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 261 29 268 338 100 29.0 3e-21 MTKVLNEFVSLESFGFMQDGSLLGYRLEDIEPELRCLIPRLDPSYVFEKDALSIMSAWFE IGSSEPLFISGPHGSGKTSFVNQYCARVNAPVISITARARLDRTDLIGGYVIDKDKSMRF ADGPLTRAWRHGCVFLVNEMSAAPPDLWLSVNELLEGSPLYIPETGEVIHPHPRTRIVMP DNLRGLTEDYGSRYVGRFSQDPAVLDRFWKMRMDYMGEEAEVSLLEATTPELEVRGMSFE EWRKEFSVRLRRAADRVRQAYCRQTEDGAVAEATISTRVLLRFRDLLLLSYRSPAMKNEP RAALRRAMKIALTDCLEEAGALAVEKLVELEIGDIGKHIA >gi|301349828|gb|ADCQ01000022.1| GENE 24 25870 - 26823 531 317 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860708|gb|EFL83785.1| ## NR: gi|302860708|gb|EFL83785.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 317 1 317 317 585 100.0 1e-165 MADLFGNRGFWQDSGCLSTEKKEDKTEDSDLVLICFQISVWSGTTTEQTSIEEGAEFMKR RRIIPGVMLKPFLDFRARAKALCQEMGEPYLNGFVMRRQDAAVAERALSVWRKEFCRRRD EVFAPAYEDILAQRLEGIIPPGCSKEAVFPPTNFVLRRISFEFDAFVLAAHGTGKRSSKD AFLDGLAERFADETDLICAALESANVTEAIVCRVRTLYERVRSWSCSQTRFALASAALEE ALAEGARTHVWCRNKKLFMQCLEKAREAFALAGAAHEQNKTEEAEPLVSLPSLEERREVL TGAAGMIARGRSLFPFG >gi|301349828|gb|ADCQ01000022.1| GENE 25 26896 - 28533 758 545 aa, chain + ## HITS:1 COG:no KEGG:ASA_P4G149 NR:ns ## KEGG: ASA_P4G149 # Name: not_defined # Def: hypothetical protein # Organism: A.salmonicida # Pathway: not_defined # 35 541 32 593 598 120 23.0 1e-25 MSQTTIALPAVLKAVNGILTSLSAGKEIKVIFAGTPCTDGKTVYLGEPLLQSQDALDAYL SHGTHEIHHVLYSDFDEVASLGGLHSLVNALEDVRIDAIGYKKYPGGYLWRNEHFSKMAR AGQLPKINEHTSPGALLCLTCYWCMTALMLEYDCSKHYSEEAKNAFVQRFGQGLFERIMQ KAEESVRSPNTAAVIQCAREIAQLFSQAISQKVFSEENKCSSDQPRAGSSSKGASASSEG KGKAKIPKKDKQKSDEFDALFESDDLKDADIHRAIEEDYKNYRGATGENPTGKAAVWPTV RSELSPRVDPEFKAEAEKLLRGGSQQFHRFLQGLSFQPTRYARSGRDLEPKRLSRLYVGD TRVFRCEESVLRPSVAMCVLLDRSGSMTREDMRTGSLCGQAIAGMTDSVSGCRSSVYAFP GVERQTLLEVKRFDEPVASCLDRFCALRPFGYTPVRQSINSAAAQLVSRRESRKIIFLIT DGLCSDAELLTDIEQDLKRAGIEIVCLGIGDDIPKIFSIQSDIKHSRQMKEAAYKLLEET FRRRH >gi|301349828|gb|ADCQ01000022.1| GENE 26 28698 - 28934 84 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860710|gb|EFL83787.1| ## NR: gi|302860710|gb|EFL83787.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Burkholderiales bacterium 1_1_47] # 1 78 1 78 78 125 100.0 9e-28 MLEIQLPKCIEARLCRFAKETGRSECALVKEALDQYLDDLEDVYLSDKVVQRIRDGSEDV VSSEEMTQILDLKRDGSR >gi|301349828|gb|ADCQ01000022.1| GENE 27 29093 - 29311 128 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860711|gb|EFL83788.1| ## NR: gi|302860711|gb|EFL83788.1| hypothetical protein HMPREF0189_00866 [Burkholderiales bacterium 1_1_47] # 1 72 1 72 72 128 100.0 1e-28 MLRGLGRTQGTTKTQIVLSALRSVFEENFLEKKTILLPEDQYQALVELVGSPLTPQEIDG RKKLKKVPDWNL >gi|301349828|gb|ADCQ01000022.1| GENE 28 29348 - 29536 109 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860712|gb|EFL83789.1| ## NR: gi|302860712|gb|EFL83789.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Burkholderiales bacterium 1_1_47] # 1 62 1 62 62 98 100.0 2e-19 MTTVYFKLSDAKPWTAEELQRLKNIRDKDIDYSDIPSTTPEDWKKAVRGKFCKPAKKSAT RK >gi|301349828|gb|ADCQ01000022.1| GENE 29 30201 - 30450 90 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 83 1 83 181 150 100.0 2e-35 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGLSIPEIQ Prediction of potential genes in microbial genomes Time: Fri May 13 06:00:08 2011 Seq name: gi|301349827|gb|ADCQ01000023.1| Burkholderiales bacterium 1_1_47 cont1.23, whole genome shotgun sequence Length of sequence - 15203 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 5, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 + CDS 662 - 2257 583 ## COG4584 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 2283 - 3041 442 ## COG1484 DNA replication protein + Prom 3644 - 3703 3.8 3 2 Op 1 . + CDS 3796 - 4191 215 ## gi|302860715|gb|EFL83792.1| conserved hypothetical protein 4 2 Op 2 . + CDS 4155 - 6203 1225 ## COG3468 Type V secretory pathway, adhesin AidA + Term 6270 - 6310 4.1 - Term 6258 - 6298 3.5 5 3 Op 1 1/0.000 - CDS 6350 - 7828 1970 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 7886 - 7945 2.3 - Term 7891 - 7921 1.1 6 3 Op 2 . - CDS 7971 - 9380 951 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 7 3 Op 3 8/0.000 - CDS 9388 - 10014 499 ## COG4566 Response regulator 8 3 Op 4 . - CDS 10017 - 11618 1050 ## COG0642 Signal transduction histidine kinase - Prom 11795 - 11854 5.7 + Prom 11835 - 11894 3.5 9 4 Tu 1 . + CDS 11941 - 13512 270 ## Tmel_0467 hypothetical protein 10 5 Op 1 . - CDS 13640 - 14755 354 ## COG3177 Uncharacterized conserved protein 11 5 Op 2 . - CDS 14761 - 15201 183 ## Pmob_1061 HNH endonuclease Predicted protein(s) >gi|301349827|gb|ADCQ01000023.1| GENE 1 662 - 2257 583 531 aa, chain + ## HITS:1 COG:AGl6 KEGG:ns NR:ns ## COG: AGl6 COG4584 # Protein_GI_number: 15890093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 16 505 50 529 530 117 22.0 8e-26 MKYKTETVIEAIRLKEAGVTTSAISKKLLAPASTINEWLKKAKQNNLTAENLRTLSEQDI EEILRPRSWFRQNVFLPDYEDLLVKASAPKMTVQNVYSQYLASVPEGCEPISKATFYREL KRTKQLASKELQDVCLLNSFTPGHMCMIDYSGDGVCWKNKNDGSVQTAQIFVGVLCYSGL IFCTATNGQTREDWLAGITKMFHYFDGVTEETWLDNSTPLVKNADKYDPDLATEFSNFCD YYNTLGYAVEPGKSRHKALVENAVKQFQDRILNHLNKRSFFSIEEINSAIEPLLAQLNNA ELTERPGSSRFSRYKAEERNLLRPLPLIEYSAHSKVMSRKVRPNNQIRLGNVRYNVPWGY VGKELLVKVDTHTKEISFIDPSDGEILTTTKIRNPSEGPEPQRKDLIPQDLKYLVENKEE LLDRIRVQLGDKAWEVAKRLAKPNNSMAVRHLKGFLSMSKKYEKDFMDKVYGELLKKAII SFRGFRDALQKVEQTEGVRYKKKRLKHGTTLDVIDCRSVRGAEYYKDRFNH >gi|301349827|gb|ADCQ01000023.1| GENE 2 2283 - 3041 442 252 aa, chain + ## HITS:1 COG:SMa0776 KEGG:ns NR:ns ## COG: SMa0776 COG1484 # Protein_GI_number: 16262872 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Sinorhizobium meliloti # 15 244 13 238 245 99 28.0 6e-21 MKIDAAEVAKVFSDLKLPAAFKAYEQQLGDPGAMKLDFGDRVALILRAELASRTQKRIQR RIKESGICDSMVGLDNTIFTPDRGMDETYVRELARCEWLAAEEPSWILITGKSGTGKTWI MKSLIKAAAERQYRCRYVKTRDLMEDIAIAVDEKRFSRLADQLDRYDLIGLDDFNLLKAK DEVREAMLELFDRRWNKRGLIISSQYPFDQWYEYIGGRGDQRDAMMDRIANGSHRLELKG PSMREKREKVMK >gi|301349827|gb|ADCQ01000023.1| GENE 3 3796 - 4191 215 131 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860715|gb|EFL83792.1| ## NR: gi|302860715|gb|EFL83792.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 131 1 131 131 238 100.0 1e-61 MIIDLSLEIQSFETINQGDYAILPLDKAKGREGSIVIQNEGALEVKQFARILLPSTKQVF LIRDNYRNESGLKIGSDFIFSNNYQPSSENLAAEISQKALIRNSNVKINEFFILRGSLYE WGGENFLKFQN >gi|301349827|gb|ADCQ01000023.1| GENE 4 4155 - 6203 1225 682 aa, chain + ## HITS:1 COG:ECs0362_2 KEGG:ns NR:ns ## COG: ECs0362_2 COG3468 # Protein_GI_number: 15829616 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 161 682 3 537 537 329 37.0 1e-89 MGGREFSEVPELTPKVSYLQVVNDVDGTSRKGTFSAKGVLIYSVKDNRTALHLGRGANVL TNEVYIYAIDQNSHADLLLGDPTSHEAEYGLTRLDSSGGPLVVKMNEEGSQGESRILFNN AHSGAESQKATFIISGHGQVIAQSGRTALTQDSNYTGITRIDANASLILTNPHATGYSDV INNGELIIGDEMDSSPTEYIIRKSENDVLGGGNLINNGVIRFGQSGKIHGEKLTIHGDYV GGSERAPSFIEFDTDPTTLKTDLLEVHGNTSGKTKILFRNSEKWGGHDLEGIKLVHVEGE SADGAFTSDPLESGAYVYRVKKGMRGEETSKHWYLSSYLRPINDKSVPDREVEPKREIRP VVGAYIGNEALVQTMFISRLHDRVGDLQYNDPFTGEAKVTSMWLRQIGGYTSWNESSGQM HNRTLRAVTQLGADFARWTSDGSNRFNLGWIAGYGHGRTKTSSKVSDLSSTGTVDGFNLG LTGTWYANGADHQGLYVDSWLTYSWFRNKAKTTIGSEKYHSKGLTASLETGYTFKLLDIN TSSGHQGAWFIQPQAQVIWSGIKSDSFRESNGTKVKFREKDNITTRVGMRTFVNLDKSSL VTHTNGTQLFVEGNWIHKTKQFSVSLDQTSFRQTGARNLGEVKVGLESKFRKNLQVWTNA GVQAGQDKYRDLTTMVGIKYTF >gi|301349827|gb|ADCQ01000023.1| GENE 5 6350 - 7828 1970 492 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 16 488 16 477 484 231 35.0 2e-60 MTKLSRRVFLGSAPAAAAAAGIFGTFFSTAAEAAIKWDETYNVIVIGAGGAGLSAAVSAK EAGAKKVVVLEKMMFAGGNTIRAGGGFNAAIKADYEKAGITDSPKLHAEQTLAAGDGRGD PVLVHQLTEKAPESVQWLKDHGVKFQDHIYQIYGGLYKRARNPIGPRGGAYIKALLEVCK KEDIPILYSTRVVEIIREHQLSGRVLGVKVEQKGGKTLYLRATNAVVAAAGGFAANDRLT AISDPRMGQLGTTNHPGATGDVLTDLIDIGAGTRGLDYIQCIPGGVPGEKHAPNLFTHVD RFLFVNLDGKRFIKEDARRDVLRDAMLDQPKAIAWTIVDADGFEQQKNSKGPENEAALKA GTLYYADSIEDLAKKIGVPSDNLKEAVDTYNKAVDTKKDPLGRAEGVLVNKIIKAPFYAG RVTMKRHHTMGGVIINKDAQVIDRRGNVIPGLYAAGEVTGGIHGTNRVGGNAMADIFTYG RIAGVNAAKNPA >gi|301349827|gb|ADCQ01000023.1| GENE 6 7971 - 9380 951 469 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 31 469 42 480 484 232 35.0 1e-60 MFRRDFLLTTLAVAAPAAAFAQDINWRLSCDVLVVGAGGAGLAAAVRASELDAEVILIEQ NVHLGGNTLISGGFLGVVDPIRQAPLGITDSEERHFQDIWNNGDKIADPTLVRKLVHEAP RMLSWLEAKGVKFQDEVIEIYGSHFPRCHKPIFPNGTAYVRALTGALMQRKVNVLTETKA IELVQDDNGRVIGIKATSKQDEFFIRARKGVILAAGGFGANLKTVAAFDPRLKGLPSNCS SGSTGDMLFAARRIGASVVDLNEIQCLPGPISNKGIRVRFHNDVRRFVFVNDEGQRFVDE RARRDELKEKILVQRNKSCYCIIDNDGLETLDLLVRRDAIRAAETGDAVKAQSLEELASA LDIPSETLIKTIEERNAEIASDKPQSRRFPIQKAPFWAARVGMRIHYTMGGLQINEKAQC LKEGKTIPGLYAAGEITGGIHGRNRIGGNGLADAFTFGMIAAENLVSES >gi|301349827|gb|ADCQ01000023.1| GENE 7 9388 - 10014 499 208 aa, chain - ## HITS:1 COG:mll0990 KEGG:ns NR:ns ## COG: mll0990 COG4566 # Protein_GI_number: 13471106 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Mesorhizobium loti # 8 196 12 200 212 136 38.0 3e-32 MKSSKLTPVVRIVDDDEKVLASEAFLVNMAGFRTSTYNSAKEFLEKDDPLFPGCVILDIR MPEMSGLQLQEEMKKREIDLPIIFLTGHGDIDMAVKAMLTGATDFIVKPPEPSRLKEALA KAVAKNQNDREAAETSEEMRALFDLLTPAEKKAAEMIALGKLNKVISFELEVSEQAVKNW RSSIFHKLNCKNIVELNAFLRKIHILND >gi|301349827|gb|ADCQ01000023.1| GENE 8 10017 - 11618 1050 533 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 4 528 51 572 592 115 25.0 2e-25 MDHLRKALPQYKIVTKEISGHEAPEDIRKEHFSFLISSAGFYASFDPSSAGLRQIATRHD ARAKTASESIGSTIIALTDRNDLKRMEDLRKKRLVTRDIDSLSGWLGAKGKLADHISAKE DQPHLFSTKYSYPDVYSYLLSGEADAAVIPTCELENISNAHLFKVIDEEKTSLACKSSSP LYPDFVFSSFPDASPEVVKNFTVSLLTMPKMPDGAAWGIANDFRSVLQLFKKLELGPYRP EPFSVGAFIEKYKTEVFLALALLLGVLFHIYRSNSLVFQRTAELREAIDQRDRVAEVARN SLKRLSQMEKRGILSQLSHMFAHELKQPLSTVVNYANGLKMYGEQKALDPIVSQGIEAIA SESSKAAQIVDRVREYAKSSRPVDSQSTMDLSQVTRKAIDTFRLYVSTQCRLQIDLPQKA EINGDPFELEILVLNLLRNAADAVEPLKNKALIRVSLTSEDSDWVLSITDNGPQVPDEVL ERMKKALQNSLKADGLGLGLKIVFAIAERHRAELKFSRVDPQGLRAEIRFKKV >gi|301349827|gb|ADCQ01000023.1| GENE 9 11941 - 13512 270 523 aa, chain + ## HITS:1 COG:no KEGG:Tmel_0467 NR:ns ## KEGG: Tmel_0467 # Name: not_defined # Def: hypothetical protein # Organism: T.melanesiensis # Pathway: not_defined # 1 520 4 507 514 255 32.0 4e-66 MPLGTSDFAALRLANEIYVDKTDLVYELASKRRKYFLARPRRFGKSLLISTFESLFRHGL RDFKGLAIEKLWVEETKFLVVRLDFSEIKFFSSPEEFSRKFASLISRCFGTVGFQYVDDD LNSATAQLSTWLRTLELSSLVVLIDEYDAPLTSCLNQHELFNAVRGQLSEFYAVLKSHDR ALRFVFITGITKFNKTSIFSELNNLSDISLAPQFGSLLGYTHEEVQTYFGSYIAKSAEVL SISQNELMNRLAAHYDGFCFEETGTKKVFAPWSLLNFLAQPDRGLKDYWFESGGKPAVLL EYLKSHALKDPEEYARDKTIALSALAGSSDVETLSDIGLLTQAGYLTIKSVEFGNTVFLD YPNLEVKRAMAQLYTERLLDGKVAGQVGAGPIVKVLYEESAESVFHILNRLFLAIDYQRY PVRDEASLRAYVQVYFAGAGLDVKVEHHNAHGRSDLEVNAGNRHWIFEFKVVQGNKGETE KLSEAVEQIKQRHYGDQQYSQEVKRVALVFSIEDRKFVKWQEV >gi|301349827|gb|ADCQ01000023.1| GENE 10 13640 - 14755 354 371 aa, chain - ## HITS:1 COG:SMa2105 KEGG:ns NR:ns ## COG: SMa2105 COG3177 # Protein_GI_number: 16263601 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Sinorhizobium meliloti # 34 371 65 397 406 189 33.0 7e-48 MIRKPFNLRKLPLDKRETLPWGDFGSLSFTSLLSLSNLDGMMLASAKADLFWISWLMKEA QLSNEIEGTVTTFEEVMGENVGIVAPLERRDDIQEVLNYHEAMNYGLEEIKNGRPFSLSL IKSLHALLLRGARGERKTPGAWRTVQVHIGKPGSSLEQASYVPPDPLFIEELIENWELFA RREDLHPIIQTAVLHAQFEMIHPFLDGNGRMGRLLITLFLASKKILHTPCLYISAYLQRH RGAYYASLAKISKNNDWNTWISFFLRAVVEHSKANASLLMKMTDLYEISKTQFAEVTNSS LAMELLDYLFAQPIFTVPNLINQTKVKASKATLLFAIQKLEKAGLVTKISEGRGRRPTVW KFGALVDLIQD >gi|301349827|gb|ADCQ01000023.1| GENE 11 14761 - 15201 183 146 aa, chain - ## HITS:1 COG:no KEGG:Pmob_1061 NR:ns ## KEGG: Pmob_1061 # Name: not_defined # Def: HNH endonuclease # Organism: P.mobilis # Pathway: not_defined # 1 137 294 430 436 147 57.0 1e-34 YGYRTKHARIANGIAKSHCADAFCIAGNFGAKRLGEFFFQKQTRRNNRQIHKLSILKGGI RKRNQAPFEVKGFRLFDKVACQGEEGFIFGRRSSGYFDVRKLDGTRISASISCKKLRLLE KRRTYLTEIRKEEALPSLSEGRGLRA Prediction of potential genes in microbial genomes Time: Fri May 13 06:00:38 2011 Seq name: gi|301349826|gb|ADCQ01000024.1| Burkholderiales bacterium 1_1_47 cont1.24, whole genome shotgun sequence Length of sequence - 22081 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 9, operones - 4 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 471 179 ## COG1403 Restriction endonuclease 2 2 Tu 1 . + CDS 737 - 838 79 ## + Term 878 - 925 9.4 - Term 801 - 856 2.6 3 3 Tu 1 . - CDS 1046 - 1408 192 ## gi|302860725|gb|EFL83802.1| hypothetical protein HMPREF0189_00880 - Prom 1598 - 1657 5.2 + Prom 1575 - 1634 4.5 4 4 Op 1 . + CDS 1666 - 1881 152 ## gi|302860726|gb|EFL83803.1| conserved hypothetical protein 5 4 Op 2 . + CDS 1878 - 2543 315 ## gi|302860727|gb|EFL83804.1| conserved hypothetical protein 6 5 Tu 1 . - CDS 3002 - 3913 211 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - Prom 3939 - 3998 1.9 7 6 Op 1 5/0.000 - CDS 4081 - 4383 294 ## COG3636 Predicted transcriptional regulator 8 6 Op 2 . - CDS 4505 - 4702 95 ## COG3657 Uncharacterized protein conserved in bacteria - Prom 4737 - 4796 2.6 9 7 Op 1 . - CDS 4835 - 7810 1910 ## ebA6638 hypothetical protein 10 7 Op 2 . - CDS 7810 - 9198 1224 ## pBCA021 putative TraH conjugative transfer protein 11 7 Op 3 . - CDS 9211 - 10116 634 ## ACICU_p0085 hypothetical protein 12 7 Op 4 . - CDS 10126 - 12468 1893 ## Bcep1808_6736 conjugal transfer mating pair stabilization protein TraN 13 7 Op 5 . - CDS 12465 - 13664 564 ## gi|302860735|gb|EFL83812.1| conserved hypothetical protein 14 7 Op 6 . - CDS 13664 - 14257 470 ## NGK_1073 TrbC - Prom 14315 - 14374 2.5 15 8 Op 1 . - CDS 14387 - 15403 817 ## pBCA031 putative TraU conjugative transfer protein precursor 16 8 Op 2 . - CDS 15403 - 16119 428 ## ECL_A161 type IV conjugative transfer system protein TraW 17 8 Op 3 . - CDS 16132 - 16647 217 ## NGK_1076 TrbI 18 8 Op 4 . - CDS 16644 - 17054 475 ## gi|302860740|gb|EFL83817.1| conserved hypothetical protein 19 8 Op 5 . - CDS 17112 - 19823 1966 ## COG3451 Type IV secretory pathway, VirB4 components 20 8 Op 6 . - CDS 19857 - 20468 492 ## gi|302860742|gb|EFL83819.1| type IV conjugative transfer system protein TraV 21 8 Op 7 . - CDS 20469 - 21350 648 ## COG1651 Protein-disulfide isomerase 22 8 Op 8 . - CDS 21360 - 21617 213 ## Daro_2317 TraB pilus assembly - Prom 21706 - 21765 6.1 + Prom 21690 - 21749 8.5 23 9 Tu 1 . + CDS 21776 - 22079 249 ## gi|302858921|gb|EFL82007.1| transposase, IS4 family protein Predicted protein(s) >gi|301349826|gb|ADCQ01000024.1| GENE 1 3 - 471 179 156 aa, chain - ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 154 3 157 427 71 40.0 6e-13 MRVFIWNKRGKPLMPCSPAKARLLLKEKKAIVKRRTPFTIQLTIATGESKQPVSLGVDAG YKHVGLSASTEKAELYASEVELRQDITDLLSARRALRQSRRNRKTRYRAPRFNNRIRTKR KGWLAPSVENRINAHLSRIEAVLRLLPVTKITVETA >gi|301349826|gb|ADCQ01000024.1| GENE 2 737 - 838 79 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDWFDYSLRIQTILAVAANCLEEERTILRLVFV >gi|301349826|gb|ADCQ01000024.1| GENE 3 1046 - 1408 192 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860725|gb|EFL83802.1| ## NR: gi|302860725|gb|EFL83802.1| hypothetical protein HMPREF0189_00880 [Burkholderiales bacterium 1_1_47] # 1 120 1 120 120 202 100.0 5e-51 MSQTIILELSEFDAALLSELSKREAKTPEELILEALHGLFASRLDDKIIPLSPDVFDACS KIIFEPEKDKEVLMLRQKLMDTKPVGTINDSCEESALATSLTSELLEYQIFQTLFQPINC >gi|301349826|gb|ADCQ01000024.1| GENE 4 1666 - 1881 152 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860726|gb|EFL83803.1| ## NR: gi|302860726|gb|EFL83803.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 71 1 71 71 143 100.0 3e-33 MPNPFVVGAYVSEEYFCNRSKETQFPEDCICVGKNAVLPSESGEGKGHLKKHVFHDFPKM VKAMYVWEEML >gi|301349826|gb|ADCQ01000024.1| GENE 5 1878 - 2543 315 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860727|gb|EFL83804.1| ## NR: gi|302860727|gb|EFL83804.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 221 1 221 221 444 100.0 1e-123 MRRSAISAFGAVLCLAFSTLFTQEVLSAEKAQRLCLVNSPSEVIACRRGDSLYYQQPGLV HGKYLLDFAAQYCDTKYEINIQFPYVLCVYSGVKEKIAAQEVRRKEIESNMISALRKIGN ELDNPDSGWKQMSSEDERRFLITSQGTGPVIQDGVEVTIRVRYPGKDGKPEKFDELKTFL VTKDTVGFKGLRQGSSLIVASNGEKKVFEFVDILKVTKLKP >gi|301349826|gb|ADCQ01000024.1| GENE 6 3002 - 3913 211 303 aa, chain - ## HITS:1 COG:lin1313 KEGG:ns NR:ns ## COG: lin1313 COG0758 # Protein_GI_number: 16800381 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Listeria innocua # 20 260 10 246 286 133 35.0 3e-31 MIQRDLFDSAQDSEIISPRLEMGSFEAFWKEKNYFSFKKFNTYLEENRIESFTRLTQRDK AEEALAELKTLTQAKGIELNFQLAQTANFPSNLLDAKDPIRCFYFLGNLNLLFSKGISIV GSREASEKGKLRAKRLSKELVREGFTVISGLAEGIDTAAHSAAIEEGGTTIGVIGTAITE NYPASNKELQNFIAKRHLLLSQVPILHWRKNTPRTNRFFFPERNKTMSALSLATVIIEAG ETSGALIQARAAMEQNRKLFILNSCFEKGLRWPDRFLNNPKFAGKVFRVRELDDILENLG SKA >gi|301349826|gb|ADCQ01000024.1| GENE 7 4081 - 4383 294 100 aa, chain - ## HITS:1 COG:RSp0076 KEGG:ns NR:ns ## COG: RSp0076 COG3636 # Protein_GI_number: 17548297 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Ralstonia solanacearum # 2 96 4 98 99 58 28.0 3e-09 MKTLKVRKMDVDDFIRDDKSAAVFLNEMIKLDSGDGSMVRLAIGNIIKCHNVSEIAKTAC VSRASLYSAFNKDGNPSFDMVQKVLAAMGLGIRFVPLENR >gi|301349826|gb|ADCQ01000024.1| GENE 8 4505 - 4702 95 65 aa, chain - ## HITS:1 COG:XF1597 KEGG:ns NR:ns ## COG: XF1597 COG3657 # Protein_GI_number: 15838198 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 1 65 2 67 98 61 50.0 5e-10 MEIKQTQKFHKWFSKLDNVTSAIVFARLLVVSRGSLGLWRNVGKGVSELKIDHGPGYRVY FTFRG >gi|301349826|gb|ADCQ01000024.1| GENE 9 4835 - 7810 1910 991 aa, chain - ## HITS:1 COG:no KEGG:ebA6638 NR:ns ## KEGG: ebA6638 # Name: traG # Def: hypothetical protein # Organism: Azoarcus_EbN1 # Pathway: not_defined # 4 561 3 575 901 152 27.0 5e-35 MVMDYYAYWNGGQIRDLFEALVSICSGSSYEGLLKTAVLAGFLVTLTGALLKWQGLASKV YLFAAVLFYSVMLVPKVDVAIHDERSADVYVVSNVPFGVGFFASATSKIGHFLTESFETA FSLPDAERFSKFGLVYPQRALNSLLAAGPVTPEGRTLTDRVIADCIGPELLDHPDKAAEL SHSGDIWTTISADGWINPARSSVSSDGTVQRCDQALQSLDQYLNTVELDFLSKRLGTVLV PERIDPADVIRRTLPQSEALLLGVSRSLEQSLKHSVMLTALPRGMASIAAQAGAPLDLAA KYSASQANLTSEINYRTLARLAEHSLPKIRNCVEFIVIAAFPLMLLLMVAAGSAASAVFR SFFVLLIWFQLWAPLLSVANYLMISVDANPMNRIAAEFGGSTLLAAGIIREAGATSQAIA GSIMLLIPVIAFALAKGSDMAFVSMATGLMAPAQGASSGASAQAAAGNFNAGNVSMGNTS MNSASANKSDLSSSWSDPYASKSQSAYGSVTRDETGTVTGMARTSIDLGVSSSGALTHSR TTGTASSAATTLTASESQALSLSSAASSSNAVSREFARAMSQGLSERLSAGQSTAGSSSS SYSKSTGDSSTVSRGLSNSENLSFTSIAKLQAGGGEAQFSTDAAKDAGKEAKGTLSASPE NLNLAAAQSSTLLGAMPTQTKDSEGKPVARQVQNAMSHLRGAAEAAGMGIGLEAKTAQQF VDTATGSQSAATQRQKAEAYHALKSTAKEIAASTSNDEMRRAAENFSAALDKAYRTSNDQ SRMLSETFSASRSQSENLSGTSQTAVNNDILVMQKLLSSDYLSAESHLKALFDSSDKREF LGASAAADSYDRAADVRHLGPGQIQETALRQNALKRQGETSLSALQLMGEGVIGKQAKSF RNNAEISSLASSSLNVEREDFNKKFDEQEEANAIGLLNQGAMTDLRIEHNNDSSTRYLNE QKGMSTLLLNSLAGGLGYQGPRLGKYKQDER >gi|301349826|gb|ADCQ01000024.1| GENE 10 7810 - 9198 1224 462 aa, chain - ## HITS:1 COG:no KEGG:pBCA021 NR:ns ## KEGG: pBCA021 # Name: traH # Def: putative TraH conjugative transfer protein # Organism: B.cenocepacia_J2315 # Pathway: not_defined # 3 462 15 483 484 139 23.0 3e-31 MTRKFTKLFSALALSTCLFTADASAGFMKDFYSAAGSYQGNVTPAGVYQSTGMNTVTGGG FVYRAPRKDFNAFYFTPPSLSAGCGGIDLFLGAFGIPSREEFVAFLRNIGTALPGLAFQL ALQSLAPDLNEQVTSFRDMIRQYTNMFQDSCTSAQNLLKMSGAEQWIQKTGFEARNALRA SGIVSDASEADAKTRTDGAAVLDYAPTRKDSGGNVVDAPELNLTWSLLSGGSFNASYSKE LKELMMTLVGTVIYVREGSGKDTVTRAIPIAGQDLVGFLFGRPDTQVLESEAFRLRCVEE DGDDRCLTVKKTTLDEVNLPYEFMKAASNYRNSILRRDPNLVSEADMLLLASSSTIPLIR LINATASHRYLGFSQDIMRIYVEAAASASSASQTGVIAAEHLKVIEARIDEVRKDIASRS DAVFQQMGRAHSFITQIEHLERSVKGALAADLAANLSFGENL >gi|301349826|gb|ADCQ01000024.1| GENE 11 9211 - 10116 634 301 aa, chain - ## HITS:1 COG:no KEGG:ACICU_p0085 NR:ns ## KEGG: ACICU_p0085 # Name: not_defined # Def: hypothetical protein # Organism: A.baumannii_ACICU # Pathway: not_defined # 31 265 20 262 262 146 34.0 1e-33 MCKRPQNLYLLLSLALTLAAPASLAASFWDEDVWNSEDRGFLYYPPEELKKKVPDPNAPK DLSLILSAAELRAEYTKRLENATFLPTEANVLAFQEVNHFVQEKAALFTDMNRRISWQNP QFDFSTLNPAANFAQVSLKEDRNQIRKEQIPQIAQDWGLMYFYRSDCRFCALQSPLVKQL KDTFGFEVLAVSLDGSSNDHFPDALLDNGVSKLLTNGLGLDRVPALFMVKRDQSASYLVS SGVLSLEDMLSRIQTLALSKPGESLFGGAQVANSVQKTTNFSAPDALAATPVTTQAVPPS L >gi|301349826|gb|ADCQ01000024.1| GENE 12 10126 - 12468 1893 780 aa, chain - ## HITS:1 COG:no KEGG:Bcep1808_6736 NR:ns ## KEGG: Bcep1808_6736 # Name: not_defined # Def: conjugal transfer mating pair stabilization protein TraN # Organism: B.vietnamiensis # Pathway: not_defined # 267 752 62 559 564 247 32.0 2e-63 MISRPLMLLLPFLMLLTSATVSAACTDGPEVCVDGPGSKFINGVEVWRECWNYQTTRHCT ESSTVDYCKGLQNTPGCRQTKADCLSYDLTGTCMSWNSTYVCSEEAKDTENIEILDFSHT VISGTDTSACSSFIDNPDCYIAEEKCVEGPETRIINGVAVYKECWRKELAFACAAAGASN SCQVLASKGCQPVGEKVCERIGADGACAQYSQKYHCVNTDPIEGDNITPEGTPSKPGFDL LTCKTATEGMTCKASSYSCMQTNDKGECIQRKYIYNCTQSLNENSCVALEKLPECEVRKS TCIERDGPKCLAYKKEIFCKGDSEISAPGADIIDSNIVIGAIEPSDTCLPLKDHPTCTVL RTECVEGPAEKIINGVPVYKDCWKYEHTYVCSAGTGGSGETKNDCGKFEADKDCVKVSSE CIAVNDVGKCLTTAHTYRCQEKEGSVVTETICRPAECLDGICDGSGDPADSDFSKVITML ETARQSALYADYDNGRFFNGEVDECSKKVLGFSCCGTKVKAGTANSSAFGKAMSFAGDVT VETVKYIGSPYVYDVLSASDTTSGILNMLYGDATSGIYNPSLSFYGFGMTLQGGQMYFTF DPTSFAMSVAVQIALDYLQCEPKEQTLMLKKGQKLCHYVGTYCSKKVVTCVERKESYCCY NSPLARILQEQGRPQLGKGWGSAQNPQCEGFTQDELERLDFDAMDLSEFEALIVQKNELN SAAAQDRGTSHTKNLVDKDLGAYVSPSVGSSHVVDPNFTGTPTAPNRPSSPKALVKNLKN >gi|301349826|gb|ADCQ01000024.1| GENE 13 12465 - 13664 564 399 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860735|gb|EFL83812.1| ## NR: gi|302860735|gb|EFL83812.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 399 1 399 399 800 100.0 0 MPNIFSRALFSSVLLMLFSVQVAAYDKQSAMDAAKEEAAKLSIKDILTESSASGTVPEYG ADVSELKDLFAKGQGNLLTPGSSKADGCLSQTSMDCRAVQVIYDPHSRPGWEESDFDNIL ADRDHLLNKVPDLPPNGGEICETITTTRPPQTDLAVCEETTVGSTAQSCFEGWTEKLDVS TLFECIARTGKKLTVECLADYNETSQDYTCLHAPLQTCHTGETVKIESTYRYLCKTQQFT QNTYRCNRYLEVVGYAGCEIGKFFEASSETSPSLGKDACNGGDVIELKYQCSNDLIPKLR IETNVKNSANFGFDIQAEDFQSEHFFSNCKGVWTGQSRCTGVNCTVEIKMDIYTRPGKWD YSGSISKRFSFQKNANDVSLDKWRTSCVSADGKVVEFDS >gi|301349826|gb|ADCQ01000024.1| GENE 14 13664 - 14257 470 197 aa, chain - ## HITS:1 COG:no KEGG:NGK_1073 NR:ns ## KEGG: NGK_1073 # Name: not_defined # Def: TrbC # Organism: N.gonorrhoeae_NCCP11945 # Pathway: not_defined # 40 175 94 227 251 64 30.0 3e-09 MNKSYFFKFLLSISLSLPLVGFTASETWTIEDVLEASSHLSEQIRDQAASAQKPPPRAYA AVSLSMPQASLERLARDAKDAGIPLVFRGVPPSDSQSDAKLPLLNPQSLAAFQPLIDAGA DVQLHPEIFSEFNIRQVPALIVKEEAPVSPDGCAKSTKAVVIPGDVTIGYALDRLADRAD SIGEAARALRAKLGNRP >gi|301349826|gb|ADCQ01000024.1| GENE 15 14387 - 15403 817 338 aa, chain - ## HITS:1 COG:no KEGG:pBCA031 NR:ns ## KEGG: pBCA031 # Name: traU # Def: putative TraU conjugative transfer protein precursor # Organism: B.cenocepacia_J2315 # Pathway: not_defined # 4 332 11 333 336 322 46.0 1e-86 MKRFSLMLILSFCCAASAFAGNCKGRIINPITDVCWSCVFPIKLGGVTLSSGKNADPETD ANRLCLCASGANITVGLNMSFWEPLRTAEVVRTPYCFPSLGGMELNVGLRAPAHGRTPNK STSAQRTSFYQVHWYFTPWLFILEVLLDTKCLEQSAWDLAYMTELDPLWDDSVTAFFLNP DASLFANPAAAAACAADCVGATSSLPISELYWCAGCHGGIFPLTGWVGSHVHFPQASSLL VARFTMKLHRSGLQWAAYGEKGQCGPYLEPIMDKRVYRTQMMYPARTTGKRDGRCYYPMG ASTSLWHSGKTWATGGEDAAYLIYRKRDCCQGAGIQPS >gi|301349826|gb|ADCQ01000024.1| GENE 16 15403 - 16119 428 238 aa, chain - ## HITS:1 COG:no KEGG:ECL_A161 NR:ns ## KEGG: ECL_A161 # Name: not_defined # Def: type IV conjugative transfer system protein TraW # Organism: E.cloacae # Pathway: not_defined # 45 209 16 189 211 95 31.0 1e-18 MTLSRLLLSVSAAASAVVCLSAYSVASSEPSFSFNVPSPCTNKAAAQSKVEVLEPLGPLY DISEPDILEAFKSRVGAMKASGEYDRRFNQNKDRIAKELEQPTSVAGLNRADDLRTWELS ASVPESLPEAMLRQAQSVPMPNLSRSLLFIDGTDEESLEAARKLLKSHKDMRIVLVSGSP AEVSEKLNQRIFFDQGGGLVRVFGIEAVPALLFNGSNGPTGAEFASDRLSELLSLIQP >gi|301349826|gb|ADCQ01000024.1| GENE 17 16132 - 16647 217 171 aa, chain - ## HITS:1 COG:no KEGG:NGK_1076 NR:ns ## KEGG: NGK_1076 # Name: not_defined # Def: TrbI # Organism: N.gonorrhoeae_NCCP11945 # Pathway: not_defined # 1 171 8 181 181 97 34.0 2e-19 MSRMKAHPRVFWHRLKDHARRFGWLWLSVFLILSLVNHRWHLALNRTHSLPFKLFVIERG QKDVRVGDYVAFEPKASAVGGYRLTFIKEVVCGPGQTLSRINRTFYCDGKELTTAKERAL NGSPLEATAPQVLGEDQYFVRGTHPDSYDSRYEAFGIIDRCRFSGRAHPIF >gi|301349826|gb|ADCQ01000024.1| GENE 18 16644 - 17054 475 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860740|gb|EFL83817.1| ## NR: gi|302860740|gb|EFL83817.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 136 1 136 136 246 100.0 5e-64 MKSTLLFLLAGVLGVALGFGTLKAKDRVSEILDRPRFAVVNLNSVVKANEVRILSEGKNG DAILPEAERFAKRLKEELAVLEKDCDCVLLVSSAVISTAKLPDYTDHLVAKLGLSLEKQS TQLRQIGARLHNGAKP >gi|301349826|gb|ADCQ01000024.1| GENE 19 17112 - 19823 1966 903 aa, chain - ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 310 889 6 557 593 192 29.0 2e-48 MTLKNFLSSAASLFAFQDLKPNFKVHPGATPTRRKAPLRIDRFADELPYAQFEESDKLCA VAGPDGTFEGIGFVIEVTPQTGTSLNMAKSLEHMIGSILPDGTGVQVSLFGSPFIDPLVD LVRSQTLRRTPEDTPARAAQKDLLSAMTLAKAKFLSRSATQPPHPALPILGRNLRCWISV VIPAKAPFEAQARDSALLVRKVMVSTLNQWHFSPFVWDERILVHTLSLILNPQLFVNGAW SFTDVDPTREPRAQIVSHQTTISVEEDGIVFRSPNHPLTVKAVSLSPHGYPQSFSLDKMA RAAGDVEGTLGFSSPFLITTYLSKTSYEKGKSYAQLKSARAEQMSATEIARFIPTLQEEA RDWRAAVQSFEHGEGLVQLSHQVMIFPTTENVTHEVQTAIGIFKKMSIELMQDHLMHLQG LMASLPMAGGPLLAFDVKLAKRSSTKTCANAANTMPLIGDWKGSGTRAGHVLPTPILSLF SRRGQITHIDPFANPHGNYNGIVTGSSGSGKSVMLNSLALGTLCSNGRVWVIDIGRSYEK LCHCVNGQWIELSDTPRADGKIDCLNPLSVTKNIEADMDLVLPLIAQMASSNEHLDDLML SHLQIHIRHIWYEAKTLGKIPTITDLTRSLLHNGRLGGAHPRLNDPEWDSYYASLTAEEQ KALDDPRLVDLGVKLMPYAQGGAYASFFEGEANIDFDNHFIVLELEQLNTKKSLQAVVLM LLMYLIDVEMRRGDRSQPKLVIIDEAWDLMVRGHSSKFIEAGYRRARKLNGAFFTGTQGP GDYWKSSAAKAALDNADCKFIMKLKESVLSECEKESQLGLDDYEMAQLRSLKGLRDVYSE VLVKIGDAPTSVNRLILDPFSLLVMSTHPKDISDINRYRKEGLSMREAIEAVLSERGQAE FIP >gi|301349826|gb|ADCQ01000024.1| GENE 20 19857 - 20468 492 203 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860742|gb|EFL83819.1| ## NR: gi|302860742|gb|EFL83819.1| type IV conjugative transfer system protein TraV [Burkholderiales bacterium 1_1_47] # 1 203 1 203 203 387 100.0 1e-106 MKRHSLIVSAVSAALLLSGCGSLTGFSNAKTDFACADLSGGPSCRNISQVYEENNPTTPV VLAASEEDFVQPFFEPNQAKDAQEPKTEPSAASGAQVSDVSAVERTSDFVTIVPARPWRK PETVLRVWLAPFHDKLGDLHDQRYLYVRLENGGWTTDSVNELVSSSRLSKPVYPLSSEQP KDPNEAKREKLKQLPAFGFSGNR >gi|301349826|gb|ADCQ01000024.1| GENE 21 20469 - 21350 648 293 aa, chain - ## HITS:1 COG:NMA0730 KEGG:ns NR:ns ## COG: NMA0730 COG1651 # Protein_GI_number: 15793706 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Neisseria meningitidis Z2491 # 60 286 27 256 260 162 38.0 8e-40 MFKPAPFLTLLFSASLLAPFSASASGACVNPDMKPLKVSAVKTPAAKAAEAESQTASDPN QTSAPLIAGQADELKTAADNFKTRYPKTKVLAYRLTPLSGIFEATVGKEVIYFDKTARFV FSGRLLDMDRGEDLTDKRLKDLRRISFDSLPLDKAVKTVYGNGKRKLAVFTDVDCPFSRK LGTTLESLKDVTVYTFLFPLESIHPEARGKSDAVWCAKDPSKALASALKGELTPKAISDN PVCPSPVNDTLALAKQHSIGGTPTLINEAGDRTAGALPLDKLEAFISAPLQGN >gi|301349826|gb|ADCQ01000024.1| GENE 22 21360 - 21617 213 85 aa, chain - ## HITS:1 COG:no KEGG:Daro_2317 NR:ns ## KEGG: Daro_2317 # Name: not_defined # Def: TraB pilus assembly # Organism: D.aromatica # Pathway: not_defined # 1 80 346 426 456 70 43.0 1e-11 MAGLGKAVSLASENQTTSITGTVSTTVTNPWKAGFGEGATHAMDRITDYYLKLASDMFPV LEVDSGRNVEIVISNGLSIERNTTP >gi|301349826|gb|ADCQ01000024.1| GENE 23 21776 - 22079 249 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858921|gb|EFL82007.1| ## NR: gi|302858921|gb|EFL82007.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 101 1 101 584 208 99.0 8e-53 MGRPRIYDTPHFCLHTYVRKGHTYVEAYRNEWDPEKKRSRIAQRKYVGALDTETGRVRLG KKYLSENPQYEGKILYYEDKQLVERTPEEVQEELNQRVPSP Prediction of potential genes in microbial genomes Time: Fri May 13 06:03:05 2011 Seq name: gi|301349825|gb|ADCQ01000025.1| Burkholderiales bacterium 1_1_47 cont1.25, whole genome shotgun sequence Length of sequence - 35867 bp Number of predicted genes - 33, with homology - 32 Number of transcription units - 15, operones - 7 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 50 - 262 195 ## gi|302858921|gb|EFL82007.1| transposase, IS4 family protein + Term 330 - 376 -0.9 - Term 222 - 253 -1.0 2 2 Op 1 . - CDS 266 - 1243 710 ## NGK_1081 TraB 3 2 Op 2 . - CDS 1240 - 1965 577 ## gi|302860748|gb|EFL83825.1| putative type-F conjugative transfer system secretin TraK 4 2 Op 3 . - CDS 1965 - 2561 457 ## ebA6600 plasmid-like conjugative transfer protein TraE 5 2 Op 4 . - CDS 2568 - 2858 339 ## gi|302860750|gb|EFL83827.1| type IV conjugative transfer system protein TraL 6 2 Op 5 . - CDS 2922 - 3251 482 ## gi|302860751|gb|EFL83828.1| conserved hypothetical protein - Prom 3298 - 3357 1.6 7 3 Op 1 . - CDS 3383 - 3856 466 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 8 3 Op 2 . - CDS 3860 - 4480 590 ## gi|302860753|gb|EFL83830.1| hypothetical protein HMPREF0189_00908 9 3 Op 3 . - CDS 4485 - 6362 1379 ## Ajs_1549 hypothetical protein 10 3 Op 4 . - CDS 6304 - 7209 577 ## gi|302860755|gb|EFL83832.1| conserved hypothetical protein 11 3 Op 5 . - CDS 7303 - 10233 868 ## gi|302860756|gb|EFL83833.1| hypothetical protein HMPREF0189_00911 12 3 Op 6 . - CDS 10226 - 11545 460 ## gi|302860757|gb|EFL83834.1| hypothetical protein HMPREF0189_00912 - Prom 11572 - 11631 5.7 13 4 Tu 1 . + CDS 13615 - 14316 391 ## COG3039 Transposase and inactivated derivatives, IS5 family + Term 14447 - 14490 -0.8 + Prom 14467 - 14526 1.5 14 5 Op 1 . + CDS 14563 - 14811 146 ## gi|302860759|gb|EFL83836.1| hypothetical protein HMPREF0189_00914 15 5 Op 2 . + CDS 14859 - 15248 186 ## Ppha_1041 transposase IS4 family protein 16 5 Op 3 . + CDS 15331 - 15504 156 ## gi|302860761|gb|EFL83838.1| conserved hypothetical protein + Prom 15544 - 15603 6.1 17 6 Tu 1 . + CDS 15624 - 16787 250 ## gi|302860762|gb|EFL83839.1| putative acyltransferase + Prom 16846 - 16905 2.6 18 7 Op 1 1/0.000 + CDS 16936 - 17967 283 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 18038 - 18079 3.2 + Prom 18030 - 18089 4.6 19 7 Op 2 . + CDS 18226 - 18972 274 ## COG2605 Predicted kinase related to galactokinase and mevalonate kinase + Prom 20123 - 20182 7.5 20 8 Op 1 . + CDS 20207 - 20803 -187 ## gi|302860765|gb|EFL83842.1| conserved hypothetical protein 21 8 Op 2 1/0.000 + CDS 20807 - 21442 143 ## COG0279 Phosphoheptose isomerase 22 8 Op 3 . + CDS 21430 - 22119 87 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) + Term 22284 - 22317 0.2 + Prom 22579 - 22638 5.0 23 9 Tu 1 . + CDS 22789 - 23004 168 ## gi|302860768|gb|EFL83845.1| hypothetical dTDP-4-dehydrorhamnose reductase 24 10 Tu 1 . - CDS 24671 - 24805 84 ## - Prom 24832 - 24891 2.8 + Prom 25304 - 25363 9.2 25 11 Tu 1 . + CDS 25384 - 26280 255 ## COG1091 dTDP-4-dehydrorhamnose reductase + Term 26303 - 26342 5.3 + Prom 27956 - 28015 3.7 26 12 Op 1 . + CDS 28037 - 28264 120 ## gi|302860772|gb|EFL83849.1| putative glycosyl transferase 27 12 Op 2 26/0.000 + CDS 28350 - 29108 74 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component 28 12 Op 3 . + CDS 29191 - 29850 72 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component + Prom 30439 - 30498 4.5 29 13 Tu 1 . + CDS 30532 - 31596 762 ## COG0562 UDP-galactopyranose mutase + Term 31804 - 31838 1.1 30 14 Op 1 . - CDS 31658 - 33073 782 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 31 14 Op 2 8/0.000 - CDS 33066 - 33722 338 ## COG4566 Response regulator 32 14 Op 3 . - CDS 33715 - 35274 657 ## COG0642 Signal transduction histidine kinase + Prom 35616 - 35675 9.3 33 15 Tu 1 . + CDS 35695 - 35866 178 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 Predicted protein(s) >gi|301349825|gb|ADCQ01000025.1| GENE 1 50 - 262 195 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858921|gb|EFL82007.1| ## NR: gi|302858921|gb|EFL82007.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 70 515 584 584 146 100.0 3e-34 MLYTVKENEQKLDLDLPGDSLDKAMAMLKGIMAVRPPSKSVWAGRPISKKARDILELLGI NNKFPRNLKD >gi|301349825|gb|ADCQ01000025.1| GENE 2 266 - 1243 710 325 aa, chain - ## HITS:1 COG:no KEGG:NGK_1081 NR:ns ## KEGG: NGK_1081 # Name: not_defined # Def: TraB # Organism: N.gonorrhoeae_NCCP11945 # Pathway: not_defined # 104 315 145 350 437 125 38.0 2e-27 MTMSFFEAKNRKKQILWALAILGLGFTAMMISSYFSESKKPAPIPQTTSSTQISMVPSKA DFEQHQAIYNDRLLNLEKESKEAKQREAKLQSEKKRLEDRIALLEKNAPKANRPAEAAPS EDGWPPSEVLGKQPISNKKGFTSGAQRQGRYAQLQTDAPPSSPAPRLIINNFGSAPEATQ PFGSLPSKVKPETLSYLPSGTFAKARLLNGATAPTRGQGSGNPVPVLLELTDSAVMPNLY RSGIKRCFVTANATGELASERVLIRLDRLSCIDENGGAVDKKIQGYVSGEDGKTGLRARL VTKSGQAIANALFTGTPNSREIVRY >gi|301349825|gb|ADCQ01000025.1| GENE 3 1240 - 1965 577 241 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860748|gb|EFL83825.1| ## NR: gi|302860748|gb|EFL83825.1| putative type-F conjugative transfer system secretin TraK [Burkholderiales bacterium 1_1_47] # 1 241 1 241 241 460 100.0 1e-128 MFPPNRLLIVGVFLCHSALLFNPSLHAKEMPKEAAVSEAQPSVHAAVAYKQPNRVVVLNS KIVRAVYDNNLLQADKDPTTGSLYVVPLTKETTGMFVVTESGQTHSITLSPKERLTAQTV TLKETGSAFSSNGHSAPSELSGLPYEERIQTVLKLIPQLKYSEGEALGGTLAGVYLHAQP VRAWDVLGLRLERYRVLNRTEHKQTVREPEFWRNGVLAVATEASDLAPGASADLWLVRSA R >gi|301349825|gb|ADCQ01000025.1| GENE 4 1965 - 2561 457 198 aa, chain - ## HITS:1 COG:no KEGG:ebA6600 NR:ns ## KEGG: ebA6600 # Name: traE # Def: plasmid-like conjugative transfer protein TraE # Organism: Azoarcus_EbN1 # Pathway: not_defined # 46 182 46 182 188 86 32.0 6e-16 MNVKEYTTEISARLALRSFFIYAFSVSLLLNVILAVGLTALDKEDRVVVLPAEITKSFWL DADSVSPEYLEQMGLFALQLALNNSPETFEHNQRKLLQYVSPEQRGATEVFLTAQGRRMK SANASVHMLPEAVETKASAMQVSVRGNVRQFIGDKLTSMQKKCWIVKFVYKNSRLWLETM QEADCKRPFEPMKPTGEI >gi|301349825|gb|ADCQ01000025.1| GENE 5 2568 - 2858 339 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860750|gb|EFL83827.1| ## NR: gi|302860750|gb|EFL83827.1| type IV conjugative transfer system protein TraL [Burkholderiales bacterium 1_1_47] # 1 96 1 96 96 181 100.0 2e-44 MESFNPHEYVPRRLDAPPKFLLWDFDLVASGIAGLAFGIIMNSLLVGALASYAAIWAYSR LKQKRHPGYGLHYLYWKFPFKTFKRTPPSSRRFFVG >gi|301349825|gb|ADCQ01000025.1| GENE 6 2922 - 3251 482 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860751|gb|EFL83828.1| ## NR: gi|302860751|gb|EFL83828.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 109 2 110 110 167 100.0 2e-40 MLSIAANRTFTFLPALLSVSVFVLSAVCPDAAWAGTATGGQEHFADLYSMLKAWSTGTLG KSIALMFLLVGLGVGVIRGSIMGAVGCVAAAMALFIGPQIIEQIFTALI >gi|301349825|gb|ADCQ01000025.1| GENE 7 3383 - 3856 466 157 aa, chain - ## HITS:1 COG:ECs4579 KEGG:ns NR:ns ## COG: ECs4579 COG0741 # Protein_GI_number: 15833833 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli O157:H7 # 20 149 17 149 152 86 37.0 1e-17 MKRLLLLIILPFIGYPVLASEDCFDRIAKEKGLDADLLRAIAFVESSGNPSAVGRNASNE DYGLMQINSTWLKRFKTSKSELLNDACFNVQVGAEILADNFSRASHPWDAIGAYNAACTR LKGQDCINARQKYAWKVYRAYVSMSDAKRRKLRDVTS >gi|301349825|gb|ADCQ01000025.1| GENE 8 3860 - 4480 590 206 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860753|gb|EFL83830.1| ## NR: gi|302860753|gb|EFL83830.1| hypothetical protein HMPREF0189_00908 [Burkholderiales bacterium 1_1_47] # 1 206 7 212 212 353 100.0 4e-96 MLSRFLILLFILVLSSVIWWPGLNDAPSFEHLSDLHLKDTQQKIGSMVESVIPVIDSVQA KVTDIFNALSGGSYLPSTEVDARKDEPAEDFFNRLWSSPYFASMRAMLEMSVVRAILALA WFAFLSPLLIAVVIDAWVVRRLKYESFAVNHPTLYQAALSAPSVLLVCAFAVMLMPWFIP AWIAALFYAAFLVSIHLIVSNFHRFG >gi|301349825|gb|ADCQ01000025.1| GENE 9 4485 - 6362 1379 625 aa, chain - ## HITS:1 COG:no KEGG:Ajs_1549 NR:ns ## KEGG: Ajs_1549 # Name: not_defined # Def: hypothetical protein # Organism: Acidovorax_JS42 # Pathway: not_defined # 9 625 4 625 633 510 44.0 1e-143 MREDSATRRRRTQPYRRSHELAAVLPWMISSGYMAYLGHQSILPLTLSLPLMTAALGMGW YRLSNGLHILRARSLLSGRRMELKPFSRTLDDFDDKSVCIGYGFTWKPEHTQKLHDLSRL NIPTLMLPSYMHRLFNRHHKIQLPEEIGMPYLHGLETSEKPLRRALKNFEGGLLIVGTTQ AGKGVMLNFIMTQAILRGDAVIFIDPKGSDRMYKAFCRACQKAGRGKPLRFHPGNRSKTD GIRFDVTAVFSTGAQIATRVISVVPGEDNVFKQFAWSCIKTFADAMIELEQKPSLKTLSQ NINKGIEDLLRALILQAVNKYAEDDWRDSAESFLPKRKDNVTDDSHDLNVLVSWYENVLP AYLHTMVVGECLKIFHHSKEHYSKITATLMPIFAMLTSGPLEESLSPDPSDASDKRPIWD MESLVKCKGVLYVNLDSLSDNMIASAVGSMLLSDLTAYAGKRYNLGLNDVRISLYVDEAS NVINQPLIELLNKGAEGGVYTTIAIQTVPDLAHRLGSVHAARMVLGNCNNLIALRCKDRE TQDFVTETFGKTYIHQVDTTLSTHADTHIGMPSFQGGASHKRTAVREEIIPSEYLGKLPN AQFFASLGGGHLMKGRVPVITDDKE >gi|301349825|gb|ADCQ01000025.1| GENE 10 6304 - 7209 577 301 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860755|gb|EFL83832.1| ## NR: gi|302860755|gb|EFL83832.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 301 1 301 301 525 100.0 1e-147 MATLHLPSRNNVILSRTETKRKFADLSEYEKMELSRAAQRALFMDNPDVILTIDKLKVIS RTFKHPKNRKDSYGRKIWYLPIRYLRPEFEYTLQPKQELSWEEMSKNYKRKKILSANSVR SAKEENRKIQLCHRHFYVDEYMEIMASKAKQENLKRYQNRAPYKPVRNIVMKLINNGQRA KEREVLKKMTETYSPQEILRYQKWYTWREKARKLLPLKAEYFNQCLRKYRNMALSRGEKF SKVRPLKPCLDLNHETYYRTRRDKYIPLEVFNHTFNPYPNVHHARRFCYPEKAHPTVSSI P >gi|301349825|gb|ADCQ01000025.1| GENE 11 7303 - 10233 868 976 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860756|gb|EFL83833.1| ## NR: gi|302860756|gb|EFL83833.1| hypothetical protein HMPREF0189_00911 [Burkholderiales bacterium 1_1_47] # 1 976 1 976 976 1688 100.0 0 MANSSLPLADCLRTFNEFDRTELLPLINQLRQAIGDDHLLSIQNELLDILTKIVGNLPLS SSPGYSYPRSYIRYSLRLSITTLNLLRQRVQFFTMPLAQKEFETQTLKLFCLTVGLFINL RVAAMTFSVAAENGDEFRFEVSYDQWCKEHEGQELRLYHNVEPNSDAAAANINRLILKYL PDALHKRFTGSFKRRYLALLSKFIGGDFGSILQDQFLLILISNAEAILREQMTIEFTRQG DSSPPYIPSILSWALCALLADELSPEEALRKSDADGNKEHLKVVERTITCKNGEIYAVID YFFPLLTAKLKELFPRQTWLEKEVLRMCCQCGIFDLKEGATFEEVENRIEIYKKGGKEVI STPVKGLRFINFLLYVPRDSYWSRTIQSLYDKHSLNARDKKQRELGLYKPVPREEWEEKK MMFERVMPIVKLKLDSQLTGESKEVIELMRTAHAKMFESFEEKKRAAEKALKEAKEAKVA PAMLAQLKADFERAKQEFEEKNKKFDCDHNVKKKQAKEKQSKPEDSSSKPINAPEPSKEM SNTDLIVTDNKAESSVPAIQTPQALKTSGKHIFNAICCDTSRFFRGVAGYFSVHNWLEKR GYRLIKIDSEEFSPLNVQKSEVKQITCESNKAKAPKTSSLIVPRSCENVPPESSEARVKE EAPDNLSPAASMEISQSKSFENAETESSGRANQTETERDLKTERKVSKSELQKHLIQRLS LSVENASANTTAGNKPKLTPEELADIEMDDEIKRLASAEAAEKSTSTVNVPKEPIAASTG LDGTMAKAEVKVVAQSIDESSSNPQINAPKSTDAVKTTTTTPAASASEAQPSKPTAKRGR KKKAETNQQSSTSEKSESFAKTKKAAATASASAKTSPKSKAVPTPVATPKTDATKTAAKR GRKPKAAVQPSKDAASPKATTPKTIKAVKADPHSQGSTQPAPKAAVKRPSALKAVPKTAA DLKSPKTQMVQVSSVA >gi|301349825|gb|ADCQ01000025.1| GENE 12 10226 - 11545 460 439 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860757|gb|EFL83834.1| ## NR: gi|302860757|gb|EFL83834.1| hypothetical protein HMPREF0189_00912 [Burkholderiales bacterium 1_1_47] # 1 439 19 457 457 894 100.0 0 MKKSAHDVFNRNCLQTGLKPDIPTLDAAILEGIKRFHLFNLPATAFSVPDFDETLAAYLP YPIFKVASLGRTPKESKKVFPSTADSIRLLHAYADSEQALYIELEDRLMKAARIGSRQKF METVIAWAYIYFFLKNRRAHRCFTALSFLLPSKTLLSYVNRFEYLLEEDEFMSREEALEN QTQRIWRSLSVLKDPLILNPHLEPILQTLAPHVHQEEFPMLALELIPELYDWTSKHQERI DSNMSGALEEFSKRYAIESGIRLSNPPSTVLNKNRGVSKGRTSGYGLNIPVGISHKAFLY AFIDVVTRMASVVKHRFGLTNQKAALFVLYTLQHLPFFNLQTNFQKIKTSKLWPVLSIKD GQTFVTVAPGPFIFFTVASLRHHGPFDYQGWTAAGCPKNLTPFNSPKGFQREARKSLRQL DDCCKSFLKSYLHYRHNNG >gi|301349825|gb|ADCQ01000025.1| GENE 13 13615 - 14316 391 233 aa, chain + ## HITS:1 COG:RSp1136 KEGG:ns NR:ns ## COG: RSp1136 COG3039 # Protein_GI_number: 17549357 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Ralstonia solanacearum # 3 233 74 310 321 193 43.0 2e-49 MSEETPHDLFACRRFVGLTMDSKCPDESTVLRFRRLLEKNSLGKQVFDFFKRQLTNRGLL FSKGTIVDGSFIEAPSSTKNADKKPDSEMHSAKKGSNRHFGMKLHIGVDKVTGIIHTAAA TPADVHDVTKVDELRRPDEREVIGDSGYLGMEKRKSADPEHVTYTAAKRYSQRKKLSAQS IANEKVLSSIRCRVEHAFHQIKVQFGYRKVRYRGLAKNTARLTMPASIANMFI >gi|301349825|gb|ADCQ01000025.1| GENE 14 14563 - 14811 146 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860759|gb|EFL83836.1| ## NR: gi|302860759|gb|EFL83836.1| hypothetical protein HMPREF0189_00914 [Burkholderiales bacterium 1_1_47] # 1 82 1 82 82 160 100.0 3e-38 MLRKHIKFFTAASTDLSWVNHHFQKNKSGLKTASSLCSWDFNIHGITIPVDAEFTYQRQR NRGEAARKTLSAKQGGYTCTFI >gi|301349825|gb|ADCQ01000025.1| GENE 15 14859 - 15248 186 129 aa, chain + ## HITS:1 COG:no KEGG:Ppha_1041 NR:ns ## KEGG: Ppha_1041 # Name: not_defined # Def: transposase IS4 family protein # Organism: P.phaeoclathratiforme # Pathway: not_defined # 3 95 372 463 570 87 52.0 2e-16 MSLKSDIEKGLWDELSESAQRKAEKYLNTGRLGRGGKLKVTRNEEVYAQARKDYGYFALV SNEAEDYFEALRKYRLREKIEEAFKDTKNRLDGSRMGRRYAQGTHVLSVCRAWISLLSAH ENKGTQRTA >gi|301349825|gb|ADCQ01000025.1| GENE 16 15331 - 15504 156 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860761|gb|EFL83838.1| ## NR: gi|302860761|gb|EFL83838.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 57 54 110 110 110 100.0 2e-23 MQSLIDWFDCIELTNLKNEDLSVTQRSGDTKRDRLFFTLLGIPGFEEKPQSQLKVCD >gi|301349825|gb|ADCQ01000025.1| GENE 17 15624 - 16787 250 387 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860762|gb|EFL83839.1| ## NR: gi|302860762|gb|EFL83839.1| putative acyltransferase [Burkholderiales bacterium 1_1_47] # 1 387 1 387 387 632 100.0 1e-179 MKFPVLDYIRAIAVILVTYYHVITYGPHASSFLGPIADFFDVLSFNEIVSLVLGNVLNLG EIGVSLFFLVSGFLIMKSRVGKTVGSFIIRRLIRIYPIAIAGVIFSFLFIVLINHYYCET PLTVNLEDLVAILTNSLLINGLIPTKMDSPIFGSSTIMPTYWFLAVIVKYYLVMCFVSTL NKERILTIALLLMLVSSSYYLFRTSNFYNFSPICSRIISDIAFSSHHIIFILIGSSIYIN YRTRLGNSDNEKIQSIKTSFSDCIYPILIVFAFITSFYTLKKIPDFPLPADMLKNYFLSL LIFVVCVVCNRHVTKVCGVVRLVSNTSFSVYVLHYAFGACILVVLLNIDFLRNYLFLIYL ITFTLIGLCGYFLYKFIEQPAGSIKVK >gi|301349825|gb|ADCQ01000025.1| GENE 18 16936 - 17967 283 343 aa, chain + ## HITS:1 COG:MT0121 KEGG:ns NR:ns ## COG: MT0121 COG0451 # Protein_GI_number: 15839493 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Mycobacterium tuberculosis CDC1551 # 3 333 2 311 318 149 30.0 6e-36 MKKILITGFTGQVGSQFADFILENTDIEVIGMMRWQEPMDNVYHLADRINKKDRIKICYA DLNDVTSLRRLLESERPDYITHLAAQSYPKTSFNIPIETLQTNIIGTANLLDSVRSIRES DRSYDPIIHVCSSSEVYGRAKVGSSLDEETTFHASSPYSLSKIGTDYLGRYYAEAYGLKT FVTRMGTHSGPRRSDVFFESTVAKQIALIEAGLQDPVIYVGNLESVRTYQDARDAVRAYF LLFEAVESGKVRPGDYFNIAGQEAFKLNEIIDLLIGMSTVDGIKVVQDPERLRPIDANYQ MFDNTKIRKAINWKPEIPVKKMLCDLLDHWRKEISMGKIPLNR >gi|301349825|gb|ADCQ01000025.1| GENE 19 18226 - 18972 274 248 aa, chain + ## HITS:1 COG:TVN0888 KEGG:ns NR:ns ## COG: TVN0888 COG2605 # Protein_GI_number: 13541719 # Func_class: R General function prediction only # Function: Predicted kinase related to galactokinase and mevalonate kinase # Organism: Thermoplasma volcanium # 6 246 84 324 324 127 41.0 2e-29 MEGVSGIRIDYDADIPARTGLATSSSFAVGLVNTLGALKGEIRSKKELADKAIHIERVMC NEVGGIQDQISSAFGGLNLIEFSKCGYKVHPVELSKGRKGLLESSLMLFYTKIQRTSSDI QKKIKTPSKINQNLLALKRLALEGFNCLTNETQTLDDFGLILNEAWKVKKGLSDAISTSF IDQCYIKGIEAGALGGKVLGAGGGGFLLFYVPMLHQESVRKALSDLIEIKFGFEDQGSQI LLNFKDEA >gi|301349825|gb|ADCQ01000025.1| GENE 20 20207 - 20803 -187 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860765|gb|EFL83842.1| ## NR: gi|302860765|gb|EFL83842.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 198 416 613 613 406 99.0 1e-112 MYGRKIGSILSTYTDQFFSIILPGEELFNDHFVSIIKAIQLKGLKAGTSDFIIKRNQHGT ISFIGRRWDKYCEECWSSGNFIFDISVLQKEGNSLYFDPLSYAISNFIASCEPSIATSNG YSCKIHQIHSKTTREIEAISDCRNLIRTSLVQFAKAGHDQIRTSLVRRFYDKNYKLIVKL KSYPFFWEKLKKLLKPFM >gi|301349825|gb|ADCQ01000025.1| GENE 21 20807 - 21442 143 211 aa, chain + ## HITS:1 COG:jhp0791 KEGG:ns NR:ns ## COG: jhp0791 COG0279 # Protein_GI_number: 15611858 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Helicobacter pylori J99 # 14 206 21 188 192 120 35.0 1e-27 MITIENFIEKHPGLETVSDDIKIALKYLVSSFSQGGGLFVCGNGGSAADSLHIVGELQKS FNNPRSLSFEQKQRFKGLEDEEFLVNNLENGLRAHSLVSEIALITAVSNDIGADLIFAQQ VWACGTTNDILLCISTSGNSRNVVLAAETAKAKGMKIISLTGENTKSKLNRISDVCIKVP TSETYKVQEYHIQIYHFICLLLEERFFKCVH >gi|301349825|gb|ADCQ01000025.1| GENE 22 21430 - 22119 87 229 aa, chain + ## HITS:1 COG:CAC3056 KEGG:ns NR:ns ## COG: CAC3056 COG1208 # Protein_GI_number: 15896307 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Clostridium acetobutylicum # 1 218 1 221 234 166 44.0 4e-41 MRALILAGGKGTRLRTVVSDVPKPMAPVCGKPFLDFLLKQLKDENVSSVIVSTGYMAEVI ESSYPEGFEGMHISFSRETTPLLTGGAIKKATQNLNSELLIVLNGDSFVKLDLEKISKFH REKGADITVLSVYMKDASRYGLLKLSSDSKVETFCEKKINSQGQINAGVYVFNSNLLKDY NEDVFSFEEWLNNNLVKLKVYAFISEEDFIDIGVPEDYERAQRFFAVKR >gi|301349825|gb|ADCQ01000025.1| GENE 23 22789 - 23004 168 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860768|gb|EFL83845.1| ## NR: gi|302860768|gb|EFL83845.1| hypothetical dTDP-4-dehydrorhamnose reductase [Burkholderiales bacterium 1_1_47] # 1 71 223 293 293 120 100.0 2e-26 MILNVASDYGVSKYTVGLKIAKKYGLDAELIKPIHQGQEDEIFQTPRAFVTLLDNTKLKK LLGLKKIDYEV >gi|301349825|gb|ADCQ01000025.1| GENE 24 24671 - 24805 84 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAFEFYLDLKNTIQNKQLKNFEDSLFQQENERDFYAKIADLRSK >gi|301349825|gb|ADCQ01000025.1| GENE 25 25384 - 26280 255 298 aa, chain + ## HITS:1 COG:APE1179 KEGG:ns NR:ns ## COG: APE1179 COG1091 # Protein_GI_number: 14601229 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Aeropyrum pernix # 3 288 9 281 305 83 26.0 4e-16 MYLIIGGGGFLGGYLIKNILNITNEKVLASYHSLKEDQISERVEWFHLNLTDQRSLKNLA SRLKFYKGNGEKITCIYTAGYIKPDDCLKNPEIAIRNNVLAILDFLNENRKFIDSLVYTS TDFVFDTNENGEPHKETDEPNPINFYGAIKLACEKIVNSYGYNVVRLPFMFGRSLNPHKS HFIEHVERVIKDRDSFEVLCDYYENSLDYNTVAKIIIELLTKFKGQLPVPVVHVCNDDPV TKYEIALAFAKKYNLEASCIKPIKLSECNFFLAKRGTIKMDNSLVKELLGITQIHFNV >gi|301349825|gb|ADCQ01000025.1| GENE 26 28037 - 28264 120 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860772|gb|EFL83849.1| ## NR: gi|302860772|gb|EFL83849.1| putative glycosyl transferase [Burkholderiales bacterium 1_1_47] # 1 75 552 626 626 144 100.0 2e-33 MGILTSNLLPLEYLNALVLEDEFSGLGLIDVSKRRVNSQRFSLLFLKSKIKNIIKAYIPL FAYNFAREIWIKHIK >gi|301349825|gb|ADCQ01000025.1| GENE 27 28350 - 29108 74 252 aa, chain + ## HITS:1 COG:XF2567 KEGG:ns NR:ns ## COG: XF2567 COG1682 # Protein_GI_number: 15839156 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Xylella fastidiosa 9a5c # 2 252 17 267 267 234 49.0 1e-61 MSLKELSLPFLLAKADIRQKYRRSSLGPFWITISTGVMIACIGLIFGGLFKSPTEDFLPF LTAGLIFWTFISNCLLDATQVFVNSEAIIKQLPIPLFSHVLRMVIRNFYILLHNILIFPI VLLFVQRGVDWNLFYLIPGLVILILNILWVSLLLGVVCTRFRDLTQIVASFLQIFFYVTP IIWLPSLLPERTSLMVLEPNPFYHLLEVVRAPLMSISPSFSDWLFSLLLAIVGWAFTIFF FDRYRSRIAYWL >gi|301349825|gb|ADCQ01000025.1| GENE 28 29191 - 29850 72 219 aa, chain + ## HITS:1 COG:XF2568 KEGG:ns NR:ns ## COG: XF2568 COG1134 # Protein_GI_number: 15839157 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Xylella fastidiosa 9a5c # 5 218 32 245 246 272 60.0 3e-73 MGVATGGRIGLTEKGKTVVRSLDDISFVISPHERIGLLGHNGAGKSTLLRVLGKVYVPTS GDVVIEGKIGSLIDISLGIDTEATGVENIYLRAALLGIPKNKVDAELDSLIEFTQLGEFI NMPVRTYSTGMHMRLAFGVSTMISPDILLMDEWLSVGDQQFQSLAEQRLNKLIERSNILV IASHSRQLIEKCCTRVLWLEHGQLKMDGKPEVVCPLYFR >gi|301349825|gb|ADCQ01000025.1| GENE 29 30532 - 31596 762 354 aa, chain + ## HITS:1 COG:MTH344 KEGG:ns NR:ns ## COG: MTH344 COG0562 # Protein_GI_number: 15678372 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-galactopyranose mutase # Organism: Methanothermobacter thermautotrophicus # 5 347 19 372 380 354 47.0 1e-97 MTLGKLASEKSHDVVIIDRKDHIGGNCFDYFDENSIDIHAYGTHIFHTDEAEVWRFLSQF TQWYPYQHEVKALVDGQLVPVPFNFNSIEQLFPKQMAERMIAALLSEFAFNKKVPILKLR ESKNPDLQFLADYVYEKIFLHYTEKQWDVRPEDLDPLVTGRVPVFVGRDNRYFQAKYQGI PLEGYTRMFEKMIDHPNIEVRLNTEFDKAMLDEYDHCFFSGAIDEFFDYKFGQLPYRSLR FDFLTFNRPYFQSNSVVNYPNNYDFTRIGEYKYFLDTQSPNTVVSYEYPEPFVLGKNERY YPIINEENKALYERYLEEAKANKKVTFLGRLGDYKYYDMDQAVSRALALAKSYC >gi|301349825|gb|ADCQ01000025.1| GENE 30 31658 - 33073 782 471 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 29 468 42 479 484 194 31.0 5e-49 MIRRELLAATVSSFSFPLWANGLEDEIWDVIIVGSGVAGLSAACSALQAGSKRILILEKG PIVGGHSILSTGYVAGVDRKRQKKLGIADSPELMLRNMLDIGGHENDFELAKIVCYQSEE TIYWLEDLGIKWEERIFQTVAGLHPRSHITSPVRAGYDYVMTLLKFALSKGAVLKLNTRA TDLIYENGSVKGILATDTNGLSQKYSGKATILATGGFTANVELRKKYDPRLGQEFPTTAN PFGSTFDGATGDGLLMAQRIGAATKDAEYLQLIPFWGGRLLDYVGGDIYVNTVGKRFVNE GGSWKEVSEAILKQPEREIWAITDSQSQKGASLGIKLMNKVISKADSIEEMAVQMKVPKK ILKETLETYNHYASEGKDPLFGKALFTQTIDRPPYYFGKEKLGVHFCCGGIKLNKNAEVV STSGSIIPGLYVCGEASGGPHGHDRMGGVALMSAFVFGRIAGKQASAFRGA >gi|301349825|gb|ADCQ01000025.1| GENE 31 33066 - 33722 338 218 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 18 206 17 205 210 139 41.0 5e-33 MFDSIEIAELQAKVRIRVIDDDEDFLKSLGLLLEMTGWTVRTYKSAKEFLSDENFSTPGC ILLDLRMPEMTGLELQRNLITQNKNNLPIIFLTGHGDVDSAVYTLKNGAFDFLQKPTNPL LLNKVIAEASQKSLSTQPKNSQRKEEYARYRSLTPREKEIFKLAADGKTNKEISSLLNIA LPTVKMHRGNAFDKLNVHSSVEALKLYDSLGLGEKEDD >gi|301349825|gb|ADCQ01000025.1| GENE 32 33715 - 35274 657 519 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 8 507 89 577 592 124 23.0 5e-28 MIGPSNFFVEFRGSIPFTHLATRINANGKEPAKTVGSVFIAKRERTDLNSIRDLEGKSIA ASMPNSLGGWLAALREIHNAGKNPDSFFSSINFTQFQTPDVVSSVLNGNVDAGVLTTCVL ENIEAMGMIEKGSLKVINEHPFNKTGLACKRSTSDLYPDMSFAALSGVPEWLSREVTVTL LSMPEFSGFRWSIEHDQFSIDQLMKDLGLGPYSYLKDTSLKGLYNRFKQEFLIALAFLLF LIVNELHLRRLVRQRTQALSKALEEKERANEEAALARRRFAALEKNGIISQLGTILAHES KQPLGTLSNYLTILQIYLNKNKETDSLRDEVLKTMGDQLERLNGLVNSVRNFAKKRQNPL VKTNLIEVAQKALRNYEASEPRFKRIKFNFQNKIGSAYVLSEPLSLELLILNLIKNGFEE ADLNSKTNPILKVSISEDDDRYCLEVENSGKEMTDKDIERIVTLGESVKPEGLGLGLSII RGIADQFGADIKFKRRNGGGVIADVFFTKYEEEVRSKNV >gi|301349825|gb|ADCQ01000025.1| GENE 33 35695 - 35866 178 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 57 1 57 190 116 100.0 6e-25 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFD Prediction of potential genes in microbial genomes Time: Fri May 13 06:06:36 2011 Seq name: gi|301349824|gb|ADCQ01000026.1| Burkholderiales bacterium 1_1_47 cont1.26, whole genome shotgun sequence Length of sequence - 16552 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 9, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 242 281 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein + Term 304 - 337 5.2 - Term 292 - 323 4.8 2 2 Op 1 . - CDS 345 - 1109 857 ## COG3640 CO dehydrogenase maturation factor 3 2 Op 2 . - CDS 1122 - 1814 507 ## Dhaf_1098 CO dehydrogenase/acetyl-CoA synthase beta subunit-like protein 4 2 Op 3 4/0.000 - CDS 1836 - 2657 814 ## COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) 5 2 Op 4 2/0.000 - CDS 2685 - 3989 1600 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 6 2 Op 5 . - CDS 4007 - 5161 1264 ## COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB - Prom 5301 - 5360 3.6 + Prom 5260 - 5319 4.8 7 3 Tu 1 . + CDS 5346 - 6467 1365 ## COG3203 Outer membrane protein (porin) + Term 6497 - 6535 6.4 - Term 6499 - 6557 -0.8 8 4 Tu 1 . - CDS 6616 - 7671 920 ## Amico_1311 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - Prom 7849 - 7908 4.7 - Term 7837 - 7875 6.0 9 5 Tu 1 . - CDS 7912 - 9429 1625 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 9458 - 9517 2.3 10 6 Tu 1 . + CDS 10042 - 11751 1189 ## COG2985 Predicted permease - Term 11543 - 11588 3.4 11 7 Op 1 1/0.000 - CDS 11772 - 12623 496 ## COG1180 Pyruvate-formate lyase-activating enzyme 12 7 Op 2 . - CDS 12620 - 14005 1541 ## COG3885 Uncharacterized conserved protein 13 8 Tu 1 . - CDS 14173 - 15765 958 ## COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain - Prom 15792 - 15851 7.9 + Prom 15754 - 15813 8.4 14 9 Tu 1 . + CDS 15932 - 16300 426 ## COG0430 RNA 3'-terminal phosphate cyclase Predicted protein(s) >gi|301349824|gb|ADCQ01000026.1| GENE 1 3 - 242 281 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 79 517 595 595 161 100.0 1e-38 KKAGKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPETP EDVQEEPEAETLLGTDIEI >gi|301349824|gb|ADCQ01000026.1| GENE 2 345 - 1109 857 254 aa, chain - ## HITS:1 COG:MJ0685 KEGG:ns NR:ns ## COG: MJ0685 COG3640 # Protein_GI_number: 15668866 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: CO dehydrogenase maturation factor # Organism: Methanococcus jannaschii # 6 254 2 248 253 169 39.0 6e-42 MNNHRVIAVCGKGGVGKTAFTTLLTKVMIEDPQAGKLLVVDADPALGLHYALGRKEIKTI GTVRDEILRVAEEGDRQAQEELADKVDYLTARVLDEGKDFSFLAMGHMESKGCFCSVNDL LQQAISYLTNEFNTVLIDGEAGIEQINRQVVEKIDTLIVLTDSSFRGMKTISHIKEMRDE GLLPFCKKIGVVFNRTRNDVSKLEAFAKELGLEIFGAVPMDEEVEAYDSEGKSLLELSEN NPALEAVRQVYKKL >gi|301349824|gb|ADCQ01000026.1| GENE 3 1122 - 1814 507 230 aa, chain - ## HITS:1 COG:no KEGG:Dhaf_1098 NR:ns ## KEGG: Dhaf_1098 # Name: not_defined # Def: CO dehydrogenase/acetyl-CoA synthase beta subunit-like protein # Organism: D.hafniense_DCB-2 # Pathway: not_defined # 28 220 48 248 251 104 27.0 2e-21 MTDFKTTLLELAEPSDKTYASEDLKALESKSNFVLKSDAVEDLGGPEGSAVFLEYSASSN QPSFAGMLCEDASSNSLGLFLYFYGPKLNDELFYLVLQNFRSMLRLPGVMVKGAGKDLWI RIGKKAQAQGIGLKELAAVLSARIQEEFPEIESVQACFLRGQGPIYKQLDQVSEVFYQNS EKLKAKVWEDRGFNFKDCHVLGHCGKCADKKLCANVRRIGRLSEAHRINQ >gi|301349824|gb|ADCQ01000026.1| GENE 4 1836 - 2657 814 273 aa, chain - ## HITS:1 COG:AF1959 KEGG:ns NR:ns ## COG: AF1959 COG1924 # Protein_GI_number: 11499541 # Func_class: I Lipid transport and metabolism # Function: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) # Organism: Archaeoglobus fulgidus # 1 261 1 251 251 199 44.0 3e-51 MIFVGCDLGSTTGKIVVLDENLSVLGSSIVRSSHGPIKTFEKAVEKTAESMGISAEELLT KFKNEGRVVTTGYGRSNLPGYTDEVSEISCHAKGASHLCPSVRTIIDIGGQDCKVISVGP QGKVLDFQMNDKCSAGTGRFFEVMSRVLDIDLTHLAEEALKSKKPCSISKQCSVFAESEV ISLVNNSVPLPDIAAGIHESIARRIHGMAFKVGVEEDVALTGGCSSNKALRKALEKRLHL PLAELTMDPQLMGALGAALFAKEHYEAEKAQAS >gi|301349824|gb|ADCQ01000026.1| GENE 5 2685 - 3989 1600 434 aa, chain - ## HITS:1 COG:AF1958 KEGG:ns NR:ns ## COG: AF1958 COG1775 # Protein_GI_number: 11499540 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Archaeoglobus fulgidus # 93 309 67 281 391 63 25.0 8e-10 MAEYVTGLERTQEYIDRLQGVLQFFETLPQEKRNPVQEAVVGLMLDHSKNVLDAAKNHKP LMCTWYGNCQEILAAMGVVYYNPVFDLMFHLGLTDYADAKECDRFNLDDKMCSLVRYAVY SMVNRLHPRPDCFVAMAEPCDGQLMLHQAFAECDYLKGVPVYTIDPSYGHTDKDFEYVAK QLKEMISFIEKNTGAKYDVNKLREIVDETNKQYEIWAEVNELMRASPAPMPSFAVGDAFW ALTQHLPCGDPRATALMGAVRDFAKANVEKGVGPVMNEQIRVFWPDLNPLWGDKLGQWLA EEWNAVVVSSFQQMTPYEKIDTSTEESMLFGLARRAIAEVPMIRQGRGWVDVVVEDLRNE IQNNSIDAVLFSGHQGHKDQSGINQFMKKACRDMNVPLLSLTTSLFDERYTPLDKVKSDI SNFFSANGFKRNVH >gi|301349824|gb|ADCQ01000026.1| GENE 6 4007 - 5161 1264 384 aa, chain - ## HITS:1 COG:ECs5298 KEGG:ns NR:ns ## COG: ECs5298 COG1775 # Protein_GI_number: 15834552 # Func_class: E Amino acid transport and metabolism # Function: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB # Organism: Escherichia coli O157:H7 # 1 378 8 390 390 125 26.0 1e-28 MNTLKQLPELTALVEAGKNPFNQVLMNYVDQGGKTVGFMYQDTPEEIITAAGAAPIYLRG TTSEGTEMAEAFFRQLTCNYTKHTYNEILDGKWDFLDGAVLYNLCDHSRRIYDNWKTIPG NPAYHFMYVPKKRSELSKDFYREEINKLIKATEEHFGVEITKEKLAEAIKLHNETRRLQQ EIYEMQKGEEVYLTGLELLMVMLAGVSLPRPEYNKMMKDLIAALKANGPRIKPKVRLLYT GGHADNPEFFELLQQNDAHVVSDNTGFGTRAADVLICEDGDPLEAIINYYFEEKPAATRQ MGTQVERMERLLDLVKQYKADGVVASRLYMCDLWAFEHFLMRKRLHENNVPFLELEVDYT PEGQGQIKTRVQAFVESLADRQTA >gi|301349824|gb|ADCQ01000026.1| GENE 7 5346 - 6467 1365 373 aa, chain + ## HITS:1 COG:RSp0337 KEGG:ns NR:ns ## COG: RSp0337 COG3203 # Protein_GI_number: 17548558 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 21 318 25 328 351 90 29.0 4e-18 MKKSLPALICAAFLGTAAQAAQVDIFGAVDMYVGVNNAGGEWRTGLQSGGLTASHIGLKG TEDLGGGTQVFFNLDQAFLADNGSKTFGNEGKAFSREANVGIRGKYGQLSFGRQYTPHFL VFAMYDPTELSLGSSDSPYFFPGPAAVTGWDGGLVRADNSIQYVLPTSFGLTNFFYVALG EHQNAAGTQDSNKLGNIYNYAAKYDNGNFSIMGSYLYRNVAMGPTKDASHNQYLNFAVSY DFGVTKPVFQFTKKFASNEAVQDKFWMAQLGTSTPLWGGKWMVSASYMKNQTKDDANAWS LGTKYAYPLSKRTRLYAGVEAVFNDSNAGYAIEAGPDSSLHFNFDANKLITGYGTDYLGK NVQQIFVGINHQF >gi|301349824|gb|ADCQ01000026.1| GENE 8 6616 - 7671 920 351 aa, chain - ## HITS:1 COG:no KEGG:Amico_1311 NR:ns ## KEGG: Amico_1311 # Name: not_defined # Def: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase # Organism: A.colombiense # Pathway: not_defined # 2 351 4 358 359 321 45.0 2e-86 MSGYPFLTLTGTARERGYQYGSQVPELIKKNIAFYRTMFEGFGVPWETAGKISKKFEPFI RDYYPEALEEISGVAEGANLSYEDILTINCRSEILFAKPDGCTTFGILPEQSCDGHTYLG QTWDWLKPARDTTVILEVHVEGQPKILIAVEAGIIGGKGLNSEGIGVCLNALSTGKGGLG VPLHILYRAILAQTNISNALEAVTQTQRAGCGNFAIGSAQGFLMCVEYTPENFDVLMPID KPMCHTNHYLSPLFRPQDTFKRDLTETFVRLNRLERLAYGLKRPFTQKDMWRILSDHANY PDSICSHQDPKDPVTRRFCTIYTLVMDLNERTFCITEGEPCDQKISSYVLK >gi|301349824|gb|ADCQ01000026.1| GENE 9 7912 - 9429 1625 505 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 31 505 42 481 484 141 28.0 3e-33 MSSPAIKLLTASVVLCFGCASFAANQTINTDLVVVGAGSAGLSAAVQGAELGKKVVLLEK NPYVGGNSQHAEGLFAVDSEWNRLRSDPLTRQQAYEAFIKKQNHLVDPYKNKDFVEGSGE NISWLASHGIEFEVRRETPDKDNTWHIIKNYKGTNHGAGLIKGMKDAADKLGVTTMVSTP ATDLITKDGRVVGVVAKDAKGNTYTINSKAVILASGSFGDDPQKVKEWGHRDPEGWKSSV PINKTGDGIVMATKIGAERGPVSFIGHLGTEGKGIKFLSNLYAVSWQPFNLWVNSDGQRF TDESTSNAFSEAANGIYAQHDHYGWAIFDTNTIDYCMTKGIDSGIGVLVPVGTQLKNLQQ DIKDALAVDSDGFKEADSIAELAKKINVPAKNLEATVAEYNKTCELQHDPMFLKDRRYLK PINGKKYYALKLKSYFFSAYGGLVTNRQHQVLDTHHKPIPGLYAAGLEVSNMVGPTYPDF FSGHAFGFASYSGRHAAINAAETMK >gi|301349824|gb|ADCQ01000026.1| GENE 10 10042 - 11751 1189 569 aa, chain + ## HITS:1 COG:ECs4625 KEGG:ns NR:ns ## COG: ECs4625 COG2985 # Protein_GI_number: 15833879 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 33 568 18 559 561 322 38.0 1e-87 MILGTSNSIKSTVMNWLLSLIFDTSSFAHGFLVYSVIISFGIGLGRKKIFGLSLGATCVL FVGLIVGYAGVKVDPAMMAFFRNFGLVLFVFFIGLQVGPSFFATFKSSGFELTGLMMLAV GLSLLITISLYFLFSNSISLPEILGIMFGAVTSTPGLGATQEALQSLGSKQDITVGYACA YPFAILSVIGVILGLKKLFGVNLAQEDKYWEEAQQVKNRAPIYYHVKTTNKALQGITLRE IREIIGRPFICSRVMHDGTITSPTADSYIYLGDRLRIVSNAEHKTAVCAFCGEEDPSIDL ATAHSPIRNERIRVTDSKMNGVMIEDLHLSRFDGVNITRVTRAGVTFFPYNTLRLQLGDT LSCVGPKNAIARLAALMGNREKQLEKPNVVAIFAGLAFGVIIGAFPIAFPYMPVTIQLGL AGGPLIAAILLGYFGPRFHLVTYTTHSANLMLREWGQAFFLASVGLAAGEPFFNSFINGG GFFYVALGLPITIIPLATVGILARTRYRMNFHSIAGLLAGCSTNTSLLGFASSLSDKGIA LISYSTVYPLAMFLRIISGQVLLMLLWTA >gi|301349824|gb|ADCQ01000026.1| GENE 11 11772 - 12623 496 283 aa, chain - ## HITS:1 COG:TM1552 KEGG:ns NR:ns ## COG: TM1552 COG1180 # Protein_GI_number: 15644300 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Thermotoga maritima # 2 283 10 283 331 264 46.0 2e-70 MIMNREQVLCDVCPKFCKLREGQIGFCRARSNIGGKIVPINYGQATSLALDPIEKKPLMR FCPGTYILSYGSYGCNLRCPYCQNASISMAGPDNCPHRLITPEGLTDLAVDLSKQEPGNI GVAFTYNEPTVCFEFIRDTSKLLHEAGLKSVVVTNGGLVRKYADELLPHVDALNIDLKGF SDEFYRYVKGEFDTVKEFIKAAVEHKCHVELTTLVIPTKNDDPEEMEREAEWIASISPDI PLHLSRFFPRYKVDDLPPTPAETIYRLKDIAEKKLKYVYTGNL >gi|301349824|gb|ADCQ01000026.1| GENE 12 12620 - 14005 1541 461 aa, chain - ## HITS:1 COG:CAC1420_1 KEGG:ns NR:ns ## COG: CAC1420_1 COG3885 # Protein_GI_number: 15894699 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 9 294 9 299 299 198 32.0 2e-50 MPVLAAVAVPHPPLIIPEVGKGEEKRIQHTINAYQQAMRFLARFKPDTVVLTTPHTVMYA DYFHISPGKSACGDLSRFNAPQAKVEIPYDEDFVHQLESYCQEHHIHAGTLGERDPSLDH ATVVPLLFLEDYLNDFELVRVGLSGLSIADHYRLGEAISAVADKTDKRVVMIASGDLSHK VTAEGPYGFSPEGPKFDKELMECFEDADFLRMMTIKPEICESAAECGHRSFVIMAGAFDR RNVDAHVLSYEGPFGVGYGVATFEGEGSDPDRDFLDKLEAIEDKEYHERLDKEDPYVKLA RLSVETFVKTGQYAPLPNNLPADMMDKRAGVFVSLHEHGRLRGCIGTTEPTQANIALEII ANGVSACSRDPRFPPVQPEELKYLVYKVDVLEPAEKISSEDELDPKVYGVIVEKGSRRGL LLPDLEGVDSVAQQVSIAKQKAGIAENESVQLYRFKVVRHS >gi|301349824|gb|ADCQ01000026.1| GENE 13 14173 - 15765 958 530 aa, chain - ## HITS:1 COG:PA4581 KEGG:ns NR:ns ## COG: PA4581 COG4650 # Protein_GI_number: 15599777 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Pseudomonas aeruginosa # 3 527 2 529 531 567 53.0 1e-161 MKKKIVVLGFLGTNLDQGGKPRWGRWRPTISLGQQDDLLVDRFELFYEKNFLDLAQLVQK DFQQVSPETEFNLREVVLKDLWDFQTVYSGIFDNLKDYKFDTDNEEYLVHITTGTHVIQI CLFLLTESRHIPGKLLQTHMQKSRNPNGTYTIIDLDLSKYDKIAERFHQEQKDGIRFLKS GIETRNAKFNEMIRELATVSVKSKAPILLTGKTGVGKTKMARLVYEWKKQKRMVSGNFVE LNCATLRGDACMSALFGHVKGAFTGAVENRKGLLKAADGGLLFLDEIGELGLDEQAMLLG ALEEKRFFPLGSDSEVTSDFQLICGTNKNLSLMVKEKKFREDLLARIQLWSFNIPSLKDR HEDIEPNLDYELQQVSLTTGNLFSFNKEAREKFLSLSNSSEALWKSNFRDLSGAVTRMST LSEGGRITESDVESEWNRLLRQWYPEGQTESEKPSLPPVLSEEQWKELDLFDRCQLEKVI DVCQSSKNLADASRKLFAHSLSEKKSTNHSDRLRKYLAKFGLSWTDLHKD >gi|301349824|gb|ADCQ01000026.1| GENE 14 15932 - 16300 426 122 aa, chain + ## HITS:1 COG:yhgK+J KEGG:ns NR:ns ## COG: yhgK+J COG0430 # Protein_GI_number: 16132255 # Func_class: A RNA processing and modification # Function: RNA 3'-terminal phosphate cyclase # Organism: Escherichia coli K12 # 4 108 6 110 339 118 58.0 3e-27 METLKIDGSIGHGGGQILRSALALSAILGKPFEMHSIRKDRNQSGLRRQHLCGVLATAEI CGAKLEGAELGSEDLLFIPKKIKAGTYQFAVGTGGSVSLVLQSVLLPLAVQKVNYLGLKA EA Prediction of potential genes in microbial genomes Time: Fri May 13 06:07:06 2011 Seq name: gi|301349823|gb|ADCQ01000027.1| Burkholderiales bacterium 1_1_47 cont1.27, whole genome shotgun sequence Length of sequence - 30915 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 15, operones - 6 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 112 - 1356 560 ## COG1403 Restriction endonuclease 2 1 Op 2 . + CDS 1322 - 1732 173 ## gi|302860794|gb|EFL83871.1| RNA 3'-phosphate cyclase 3 1 Op 3 . + CDS 1725 - 3230 1326 ## COG1690 Uncharacterized conserved protein + Term 3280 - 3309 2.1 - Term 3262 - 3303 11.3 4 2 Tu 1 . - CDS 3322 - 4704 1761 ## COG3069 C4-dicarboxylate transporter - Prom 4728 - 4787 2.3 - Term 5322 - 5356 5.9 5 3 Tu 1 . - CDS 5376 - 6785 1378 ## COG3964 Predicted amidohydrolase - Prom 7005 - 7064 5.0 6 4 Op 1 . + CDS 7007 - 8041 596 ## ETAE_0138 hypothetical protein 7 4 Op 2 . + CDS 8065 - 8517 337 ## Cyan7425_1735 hypothetical protein + Term 8571 - 8602 1.5 8 5 Op 1 . - CDS 8559 - 8717 86 ## 9 5 Op 2 . - CDS 8748 - 9998 181 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes 10 6 Op 1 . + CDS 11115 - 11768 147 ## gi|302860801|gb|EFL83878.1| peptide amidase 11 6 Op 2 . + CDS 11795 - 12364 360 ## BF1721 hypothetical protein 12 7 Tu 1 . - CDS 12428 - 12964 48 ## gi|302860803|gb|EFL83880.1| putative 4Fe-4S binding domain protein 13 8 Op 1 . - CDS 13587 - 15875 1011 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 14 8 Op 2 6/0.000 - CDS 15890 - 16486 178 ## COG1145 Ferredoxin 15 8 Op 3 . - CDS 16542 - 17192 238 ## COG3381 Uncharacterized component of anaerobic dehydrogenases - Term 17204 - 17249 4.1 16 9 Op 1 . - CDS 17273 - 18091 168 ## Elen_2766 DMSO reductase anchor subunit-like protein 17 9 Op 2 16/0.000 - CDS 18102 - 18695 405 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 18 9 Op 3 . - CDS 18699 - 21368 2051 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 21391 - 21450 2.0 + Prom 22125 - 22184 2.7 19 10 Tu 1 . + CDS 22363 - 22770 86 ## gi|302860810|gb|EFL83887.1| putative LysR substrate binding domain protein - Term 22777 - 22811 5.5 20 11 Tu 1 . - CDS 22857 - 23630 318 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 23744 - 23803 3.9 - Term 23783 - 23823 4.3 21 12 Tu 1 . - CDS 23845 - 25638 2775 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 25682 - 25741 4.9 22 13 Tu 1 . - CDS 25758 - 26252 474 ## Swoo_1771 phosphate-starvation-inducible E - Prom 26459 - 26518 5.8 23 14 Tu 1 . + CDS 26679 - 28445 403 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Term 28454 - 28494 2.9 + Prom 28604 - 28663 2.9 24 15 Tu 1 . + CDS 28791 - 30551 469 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Term 30590 - 30628 9.6 Predicted protein(s) >gi|301349823|gb|ADCQ01000027.1| GENE 1 112 - 1356 560 414 aa, chain + ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 385 16 418 427 131 33.0 2e-30 MPCSPAKARLLLKEKKAIVVRRTPFTIQLTIATGETKQPVSLGVDAGYKHVGLSASTEKA ELYASEVELRQDITDLLSARRELRRARRNRKTRYRAPRFDNRIRTKRKGWLAPSVENRIN AHLSRIEAVLRLLPVTKITVETASFDMQLLKNPDISGKEYQEGEQLGFWNVREYVLFRDG HVCQHCHGRSKDPVLNVHHLESRRTGGDSPGNLITLCETCHKALHRGEITLKAKRGQSFR AEAFMGIMRWEVLNRLKASHPELEVNNTYGYRTKHARIANDIAKSHCADAFCIAGNLGAE RLGEFFFQKQTRRNNRQIHKLSILKGGIRKRNQAPFEVNGFRLFDKVACQGEEGFIFGRR SSGFFDVRKLDGTRISAGISCKKLHLLEKRRTYLTEIRKEEALLALPEGRSLRT >gi|301349823|gb|ADCQ01000027.1| GENE 2 1322 - 1732 173 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860794|gb|EFL83871.1| ## NR: gi|302860794|gb|EFL83871.1| RNA 3'-phosphate cyclase [Burkholderiales bacterium 1_1_47] # 1 136 1 136 136 266 100.0 3e-70 MPCLKAGVSAPKFDELEITENPDIEEPGAAVIVRTTGRNPTVFSEIAQYGDTSEALARKI RGFLAASAPIETHLADQIILPLFFAAGGSFLTKGSSEHLESCIKVLELFTGQKVKTEKDG KCLVVNVPKFKRENHD >gi|301349823|gb|ADCQ01000027.1| GENE 3 1725 - 3230 1326 501 aa, chain + ## HITS:1 COG:DR0430 KEGG:ns NR:ns ## COG: DR0430 COG1690 # Protein_GI_number: 15805457 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Deinococcus radiodurans # 89 475 79 463 470 387 51.0 1e-107 MIKGKDLEELKVPKVAEIRAKLYEALGKSYAAGKKDSELKPLVGKLAVSANPTEVLEQVD IPEEVRENFKAAAEELEKFRSGRIVYSERKEKAPWKLWGTEKVEARALEQMDEAVSLPIS VGGALMPDAHQGYGLPIGGVLATKNAVIPYAVGVDIACRMRISILDIPYEEFEKDRRKFG ATLLDETRFGVGVTFEPGKRTHKVMEDPLWRKSGVVKENFKRAASQLGTSGHGNHFVEFG KLTVENDVDEPTLKIKAGIYTALLSHSGSRGLGLHVANHFSELAQQLHPELPENLKRLAW LELDSQEGKDYWEAMELCGKYAEANHELIHESVIGALGCGVLGFVENHHNFAWKEMYDGE ELIVHRKGATPAGKGKLGVVPGSMGSSGFIVRGKGNAESFNSCSHGAGRVMSRAAAFRTL KHADMKKILKEQSISLIGGTLDESPEVYKDINKVIDGQRDLVDVLAKFEPKLVRMAAEGN QWGNKKKKKKPENKGDGDVCM >gi|301349823|gb|ADCQ01000027.1| GENE 4 3322 - 4704 1761 460 aa, chain - ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 459 1 460 462 285 41.0 1e-76 MLSICIVIASIAAAAYLIFKKYYAPGALLFVGLITLGVVACISPDPLITGKKATHLAGLD VIQIFTNLLQTRTAGLGMNIMAIAGFTYFMDQIGASGALVRLSVKPLKLIKAPYIVMTLG FILSLILNVFIPSAAGLALLLMVSLYPVMVMGGISRQSAAATILVGGCCCFGPSGGNNLL AADLTKMHVMDFFLNVQWTIGWVAVIAMLVAHFFIQRWFDKRDLAKGILTKEDFEVPQLT KEDAKAENAPLWYALFPLIPVILLFVFSPLMYKGIRMEVVTALLVSTFVALILDGIRRMN LKESIGTIKTFAQGMGKVFTSTVFLIVCAEVFAAGLTKSGGIAEIINSVSGMQAGGYAVF TVMFLIVVGSAFVMGSGNAAFFSFAPMIPDIAAKVGLNAAFMISPLQLASGMARSSSPIA GVTIAIAGLSGLNPFDLIRRSIPVMVIAIIATYLRSLMLI >gi|301349823|gb|ADCQ01000027.1| GENE 5 5376 - 6785 1378 469 aa, chain - ## HITS:1 COG:mll4451 KEGG:ns NR:ns ## COG: mll4451 COG3964 # Protein_GI_number: 13473750 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Mesorhizobium loti # 2 87 172 260 580 62 33.0 3e-09 MFDLIIRGALVVDPLNKVNAIKDLAVSEGKIAAVKDEISLPAKKLIEASGKVLIPGIIDM HTHMRTVLGHKHAQRMIALAGVCTTLDMAGPLEDILTSIPGSGAGVNIAILDAARDGQTL TSSRPSQQEQSDFLDRTLENGGIGIKLLGGHFPMDVDISESFIELANQKKSWIAWHVGST AHGSNIEGFREAVAAAKDNFLHIAHINSYCRGQISNETDEALEAISLLKAHPHIFSESYL SPLNGTRLVVQNDAPISKVTVTCLKKLGYEPTYNGMKKAIFDGAAGVLVDDGTIGKLLSG KEGVEYWESKETKTTGSFKVNPAISRFLIASAKRADGSFVVDSFSTDGGCYPRNVIVENG LLLVKFGALNLNEYAVKASLNGARALGLKSKGHLSVGADADISILDIQNEKAFATIVEGN VIMLDGQLLGKGTTIICDERGASTLAKRGIKHIVKEEFSLKQITDRFIP >gi|301349823|gb|ADCQ01000027.1| GENE 6 7007 - 8041 596 344 aa, chain + ## HITS:1 COG:no KEGG:ETAE_0138 NR:ns ## KEGG: ETAE_0138 # Name: not_defined # Def: hypothetical protein # Organism: E.tarda # Pathway: not_defined # 9 344 34 385 385 332 50.0 1e-89 MKIYSLTELVALTASVLLTTTAFAQQDSQKSLDYSLDTANVEITPAGETSTIQKEEVEDD EPFLPIFGKEAREKGYELPKSYGINVNYMNIHQNINVKSIQFDGLTVPIFNKPLPPSLFK IDVLSTRQRSHTETLRLDAWVFPFMNVYGVVGHTKGRSISKINVGSTNSIVNKLIKSMGD MDGIDFVLKFKGTTYGLGTTFAGGVGNWFGLLDLNYTRTKLNIIDGNIKAFTLAPRVGYR FTLPAVDTIKLPQSKFSLWVGTMYQNVDQNFHGKLSKLSFSPKLQSLISAVNKGDGTFNV KQKMESPWNMLAGFRWEITPSFNIVTEAGFIKRNSFFAALEYRF >gi|301349823|gb|ADCQ01000027.1| GENE 7 8065 - 8517 337 150 aa, chain + ## HITS:1 COG:no KEGG:Cyan7425_1735 NR:ns ## KEGG: Cyan7425_1735 # Name: not_defined # Def: hypothetical protein # Organism: Cyanothece_PCC7425 # Pathway: not_defined # 1 150 1 150 151 100 42.0 2e-20 MKLAEALRERKQLQIKMGTLRQKLIDNATYQEGSKPVEDPAELIKALESTRGELATLIKR INATNASVKVGDFFLGDLVIDRDTRITEVTALNNLIAAASQVSNRYSRSEILVLPSIDVK ETQKKVDQLAKDIRELDNLIQATNWNTDLI >gi|301349823|gb|ADCQ01000027.1| GENE 8 8559 - 8717 86 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIPEPALEQSNQSTVVKCPRETEKYSRRSHVNLVTSQAIKVNFGPGLRAVRE >gi|301349823|gb|ADCQ01000027.1| GENE 9 8748 - 9998 181 416 aa, chain - ## HITS:1 COG:CC2770 KEGG:ns NR:ns ## COG: CC2770 COG3550 # Protein_GI_number: 16127002 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Caulobacter vibrioides # 34 336 28 356 435 127 28.0 3e-29 MTANYVDIYRHFGADAEKVLLGRLGLSCRNEYFFEYDQQYLVSFPNPSPALLEFSQGLQQ EKYGKFPHFLADSLPDDWGQKLMNIGFRKKGFSINEISYIDRLRNLSDDAKGSLSFSPKE LGEISGRCLGIEEIEELNQNALTVYEEETCKVLETLSRISCPCGGSRPKGNLYFSKDLRL CHTSWQPSFEAWIVKFETHSTVLASEEGVFEYIYAQLAKQSGITLPNTHLFELSDSRLFA IQRFDRENQRRIFSASPAGILGLDWRLPSLDYEQLIRLASSLTKSIPSTREIFRRMIFYL FSGNQDDHAKNWNFLQDDFGNWSLSPAFDITFSPSPYYEHFTSFMGFSKMPSKKAILKLA KLAGEEEPFAVIEEVVETLSGFSLLAKQLSVKPSGIKEATKTLNELYRQNKQLLKG >gi|301349823|gb|ADCQ01000027.1| GENE 10 11115 - 11768 147 217 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860801|gb|EFL83878.1| ## NR: gi|302860801|gb|EFL83878.1| peptide amidase [Burkholderiales bacterium 1_1_47] # 1 217 204 420 420 444 100.0 1e-123 MIGVDPADDQSFELRSKESKPSRKRIIICVSRSLGEMGLLQTKLRSFFTQLKLNGLEFFF IDLPEITFDYKTISSTDIRSDMTKFLQRYGYDKEPGSFEELVERYRERPHAHFYGMERLE EALVMPQISKSVLKKLVNENVAKARDLINSILDCYDADFVGFLNFVDWFSIGGGPSCTLP VSFETKPPISIMLGSRVGNDLALLDIVQEFSEIAKSV >gi|301349823|gb|ADCQ01000027.1| GENE 11 11795 - 12364 360 189 aa, chain + ## HITS:1 COG:no KEGG:BF1721 NR:ns ## KEGG: BF1721 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 164 1 164 171 206 64.0 4e-52 MIILIAGDTHTGKTNLAQKLLEHFKIPYLSIDHLKMGLIRSGNSDLTPESDDDALTEKLW PIVREMIKTCIENNQNLIIEGCYIPFDWKKDFSEEERKSISYLCLIFSRTYLEKNFEQIR KYENVIEQRQCSELPLEEMISCNEKNLQNCLECHLDHIDIDDKYEVFPKAINCIDRQLKE KLCQNGCRT >gi|301349823|gb|ADCQ01000027.1| GENE 12 12428 - 12964 48 178 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860803|gb|EFL83880.1| ## NR: gi|302860803|gb|EFL83880.1| putative 4Fe-4S binding domain protein [Burkholderiales bacterium 1_1_47] # 1 178 213 390 390 342 100.0 7e-93 MKLGEEIDSKRRLLFRKVLNELKDNSEIASLRGKAPKSEKVFSMIHREFFLACIELIKEK KEHFEIKERIFSLPGVRPNLCNGCNICALLCPAGCLQSKESENNFKLLADPLRCIGCNRC TEACPTQALVMRKIPGTSEILSGDTRILLTEFHKNCIQDDVSPEARIKEIFDLPIYRT >gi|301349823|gb|ADCQ01000027.1| GENE 13 13587 - 15875 1011 762 aa, chain - ## HITS:1 COG:YPO3558 KEGG:ns NR:ns ## COG: YPO3558 COG0493 # Protein_GI_number: 16123702 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Yersinia pestis # 325 745 13 471 472 242 32.0 2e-63 MKRITLLRTFIVLLFVGVAAGGVIWHTGWGTLSSFGLGSIAHICPVGALESMFASKTFIS TALICLGLFSLVIVLLGRFFCSWCCPVPLLRKLTGTDPKEIASKTTAVEALNSKNTFTRF HCETGNKNNSEVWEGKQERKNFLSSEKLQKNGPFFVLGAALASSAIFSFPVFCLICPVGL TFAFIIGMIHLLKFNEPSITPLVVVGILFIEIFFLHRWCHYACPIGAFITLISRLNKTFQ PKIQKEKCLTSHGLACRICSRSCPENIDLRKPVPVEDSARCLKCGICAEKCPVSAISFPI FERKLKNKDTTPSQSPTTISNFPSRVQPKVVVPKDPFKEISETFSLPSAIHEGSRCIGCG LCVESCPQHNPIPQILEAISKGDVKTASGIVYQPGKLPEICARLCPEEKSCMAACPIGTF SDPINIHALLCYVSDRALARPAGRKPRLCPNAASVAVIGAGPAGLAAADIICSKGHRVTV FDKENQIGGLLNFGIPSFKLEKERILKRRKLYEKNGITFHLGKNISTAEDWQKILDSFDS VLISTGAEIPVPLNTRGADRPFVFQGIDYLRSISRHTSEAANSNYSDPLHVANKRVAVLG IGGTALDCARTAVRQGASSVICIFRKSLLEAHPPKDDYRYALQEGVEFMDRTVLDNIESD GTIQYTRMNQERSTLNADVVIVAYGFKGPDTTALREAGVIVTKGSIKTNLSHVFIAGDAM SGPGYVSSAIESAERAAGKILIYLKDNYKNTNYTSRKNYEFQ >gi|301349823|gb|ADCQ01000027.1| GENE 14 15890 - 16486 178 198 aa, chain - ## HITS:1 COG:HI1043 KEGG:ns NR:ns ## COG: HI1043 COG1145 # Protein_GI_number: 16272975 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Haemophilus influenzae # 21 171 20 158 166 80 36.0 2e-15 MAQQKSVGRRDLLISAGVSAGLFAIGFAVNKNSYAGAVIRPPGGQSNDFLSKCIRCDRCR SVCPTEVIAIGGISNGVINLRTPVMNYKYGSCDFCRKCIEVCPTGALLNFIGDTTPIGKA QLTESCIALRTGACTKCKEECPYGAISLDERMVPLIDSEKCNGCGVCEHICPAHVLQTFT GKKVRGIEIVPVGKNQNS >gi|301349823|gb|ADCQ01000027.1| GENE 15 16542 - 17192 238 216 aa, chain - ## HITS:1 COG:VC1720 KEGG:ns NR:ns ## COG: VC1720 COG3381 # Protein_GI_number: 15641724 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Vibrio cholerae # 12 211 13 215 220 59 27.0 6e-09 MKATSENFTDLAFTYRLLSRLFKKEIDKDFITYLNTLNLSDFSDDPKIRRGAALINTGLN HKDVVTFEDYLAADYTKCFIGTTVVGQSSYPYESVYTSPKRLVMQEAFEEVRRIYHSFGV TNASDLYDDHLGIELDFCAFLCEKTAEAIRLQRSSAEFIDAQSKFLDNHILNWVPRFLFD LRKAAETQVYLGSAQMLEGMIEAHRKLLQDIEDTND >gi|301349823|gb|ADCQ01000027.1| GENE 16 17273 - 18091 168 272 aa, chain - ## HITS:1 COG:no KEGG:Elen_2766 NR:ns ## KEGG: Elen_2766 # Name: not_defined # Def: DMSO reductase anchor subunit-like protein # Organism: E.lenta # Pathway: not_defined # 5 270 5 265 269 75 26.0 3e-12 MVSDWTLSICTAFFCLGAGLLAALSVSEFSDFSERTLKIGSVLSLLTLGLGSVLALSNLG RPEMILGVLRNPGSGLFWELIGAAGSILFAAIYTTALFRESEQCTTKTLSIIAAAFSFGL VIALGCNFMMPWRPVLNTFTLVLPFIGFFLLQGALTYCLLCTLEKTENRLAKYGTIATEG LNLIFLGCYVFYLWFGEETKEAVQILLEGSLSTFFWGGCVLLGAVIPTVLIKLQKTGPWL VAAAVTCVFISSGIWQSLLFTIGQATWHFFKS >gi|301349823|gb|ADCQ01000027.1| GENE 17 18102 - 18695 405 197 aa, chain - ## HITS:1 COG:VNG0830G KEGG:ns NR:ns ## COG: VNG0830G COG0437 # Protein_GI_number: 15789981 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Halobacterium sp. NRC-1 # 1 181 1 208 262 173 46.0 2e-43 MTQKTLVIDLDRCIGCLACEVACKNENNVPLGVYYNKVLSIGPVGKFPEIKQYFLPTVCQ NCKDAPCVKVCPTGASFKTEDGQVLIDKEKCIGCKMCIAACPYGARSFNPENKVVEKCTL CRHLQEIGEQPACVKACCADARIFGDIDDPESEVSKAVAAAGPENVYSMPDSGNHPTVRY ILHKKTGEWVSKPPKML >gi|301349823|gb|ADCQ01000027.1| GENE 18 18699 - 21368 2051 889 aa, chain - ## HITS:1 COG:AF2384 KEGG:ns NR:ns ## COG: AF2384 COG0243 # Protein_GI_number: 11499961 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Archaeoglobus fulgidus # 7 787 3 750 822 247 27.0 6e-65 MKLSNFSRRSFVKATALAGAAASSPLATSFAADTAAVSNGNSKPKDDTQIITTCCRACIH NCGVRAHVRNGRVVKIEGDPNYPMTDGALCAKGLCGINALYHPDRNKYPMIRVGARGENK WKRISWDEAIDIIAHKMMDARAKYGAESVMCSTGGGGNPHFRMIARFCNIFGTPNWYEPG CAQCFLPRTLAFGMMYGGPSTSIADECALEIYNKNTPMKNLVLWGTDVSYSCPAGGGHAL ANLRAKGVKTVSVDPRFAPAAAKADVWLPIRPGTDVALQLAWIRYIIGHQLFDKDFVLKW TNLPYLVNTKTKMTVRADEVFNNGSKEDFVVWDAKTNQPQPLPYPWNEALDPVLDGEFNY NGVNYKTGFRLLKERAEPWTLEKAGETCWLKPEKIEEAIKIYADGPGGLSLGVATDQNPN SVQAAMGAVILNALMGYVEKPGTIMNRNPLAVPPKNSLVSRCERLLPPGQLAKRLGGVEF KGLLSWDAAQPTAIQQAIMTGKPYPIKVWLERSGNKLGVVGNASSWAEATKHVDFIVHMF NYPTSFSMYADMLLPTTEWLETDFLAESLNTVWARQAVVHTWETRHETVIWSKILKRCGE LGHEVCRKSFDPEFMGADLPQWDSMEQILDLKLKPLGITFAELKKKGYIEAMPYDKWNSY YVYKNINPKTGLPVGFGTASKKMELYADRFITMGRTGAPYAKQKLEPVAKDYDPLPYYME PSESPNRESAKEYPLVMTNGRLPMYHHSTLRNIPYLREIYPVPEVWINPETAAKYGISQG DWTWIESKRGKTQGKARLTEGINPGVLYMERFWFPEKLSAPTHGWQEANVNVLSKNTAPF NDMVGTYTLRGYQVRISKADKGPEGIWTKPEDFKGWMAQPSDNTPKIEG >gi|301349823|gb|ADCQ01000027.1| GENE 19 22363 - 22770 86 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860810|gb|EFL83887.1| ## NR: gi|302860810|gb|EFL83887.1| putative LysR substrate binding domain protein [Burkholderiales bacterium 1_1_47] # 1 135 196 330 330 282 100.0 5e-75 MPNTAPTMILYKDGVASKIIQWGNIYLSHDQFLIRNLVLNHQGITPDLYLGHIIKELREG RIVPVMKGWERQNWNMHILARKDQYIEDSEIRNFMNWFSQIENRNCVERIMEARKAIEEA KANGLIPECLMESQE >gi|301349823|gb|ADCQ01000027.1| GENE 20 22857 - 23630 318 257 aa, chain - ## HITS:1 COG:CC3480 KEGG:ns NR:ns ## COG: CC3480 COG0846 # Protein_GI_number: 16127710 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Caulobacter vibrioides # 17 247 7 238 238 191 44.0 1e-48 MEINFKELTLKGDRPLVFILSGAGLSAESGIPTFRDANGLWRKYDPKELASIRALERHTQ DVFDFYNERIKNAEPCRPNAAHIAIANFQKEMAPFCDVIHVTQNVDNLNELAGAPRVFHL HGDFQTSLCRKCKKTFPRLGFYEREQVCPVCEATNFAMRPNVVLFGEIPYGMDWITSYLK KACVFISIGTSGTVYPAANFVKETKASIRINLDLDPLIHPYSKFTNRIYGKCTETLPPLL DQLKQELKNRIAAELAD >gi|301349823|gb|ADCQ01000027.1| GENE 21 23845 - 25638 2775 597 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 90 594 1 477 484 251 37.0 4e-66 MLLTKLSVAVGLAGVALAANAVTYTPGTYTEKVNGHNAAFTVKVTVSKNKIEKIEYPDNL ETIGVGKVALDKLSKKIIDRQSLGVDNVTGATITSFALKGAVKKALEQAKVSKADMAKLM KNSEKYTALPAEIKTNVVVVGGGGSGLASAIAAQQAGAKVIVLEKLGILGGSTNVSEGAL NAADPQRQGKQGIEDSIQKHYEQTMKGGHNIGNPDLVHYLTDHALESVHWLESIGVKFKD EVGTATGALWQRSHYPATPSGNTYIRSFEKYIAAHGNDMKVYTDMDAVSLIQDKAGRVIG VVAKDNHTGKTTKFMADKGVILATGGFGANVALRQKVNTGVFKDYDLGKGIGCTNFNKSA QGSGIIMGEKVGAHVIGMSDIQVHPCGTPGTGLMEMVRTSGRNRLFINKEGNRFVNEGAP RDVLAKAIFAQPGSTYYVLVNHLRYPSLDWVDANGAKMKDMIDLGRVVSAPTLDELAKKL NMPAANLKKAVEDYNGVVAGTYKDPLGFVANNKADKQMTEGPWYACQKVPTVHHTMGGLE INTKAQVLDANGKVIPGLYAAGETTGGIHGSNRLGGNAIADIMTFGRDAGTHAAKGN >gi|301349823|gb|ADCQ01000027.1| GENE 22 25758 - 26252 474 164 aa, chain - ## HITS:1 COG:no KEGG:Swoo_1771 NR:ns ## KEGG: Swoo_1771 # Name: not_defined # Def: phosphate-starvation-inducible E # Organism: S.woodyi # Pathway: not_defined # 25 124 21 119 132 68 44.0 8e-11 MNKPIIAKINDKFETLLLIIQAGALIIITIATAVAIVAEGYDMFATKSIGLANLLLLFLF IEILSMVRQYSLGQHELKLKTPLVITVVAVARYLIINMEHLTSKWILLTSVSILILTIAL LISRQIKGLHDDIEEENLSSLQKLSGKLSGIVCKKKDIQKDDNP >gi|301349823|gb|ADCQ01000027.1| GENE 23 26679 - 28445 403 588 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 23 521 25 506 618 159 25 2e-38 MEGISLISTLAIGFGVALVLGFLAEKLKVPALVGYLLAGILVSPSVFGFDVDLNLANQLA EIGIMLLMFGVGLHFSLTDLLKVKGLVVPGAICQMLLSALIGFGLSWLWGWDVGHSVLLG CCLSCASTVVVLKALEARGMLEGFDGNVAVGWLIVQDMVTVLLLVLLPPMASVFTGQAQT SSQPLWQLLLITLAQVVVFIVLMLVIGRRLLPYLLWQVAKTGSRELFTLCVLAVAIGIAF GAAEVFHVSFALGAFFAGMVMRESKYAHRAAVESLPLRDAFSVIFFVGVGMMFNPMVIVE HPWHLLCVLLLILFINPIIAALLVMLFRYPLHTALTLGACLGQIGEFSFILASLGKSMGI VSDEGMNLVLATAILTIALNPIAFATLPKVAEFLKKRSKLARISAARPDPQSLMPDEVEK KKITGHIVIVGYGDVGCKLTAALQKDEIPTVIVDKDDSLVAQLRKNGYTAIQGDAVDPSV LLQAHVQNAAVIVLTIRDEILERKVVETAKLINQGVKVILRAATDQEANHFRADNLGTVV QASVILSQEMDKLVRLAILKGDSPVDEEIAVNSDVNPAPPSQHPEVNP >gi|301349823|gb|ADCQ01000027.1| GENE 24 28791 - 30551 469 586 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 24 519 25 501 618 185 27 3e-46 MSHSFSLISTLAIGFAIAWALGFLMERIKVPALVGYLLAGIIISPATPGFVGDVNIASEL SEIGVMLLMFGVGLHFSMTDLIRVKNIAVPGAILQMGLATCLGAVLAHFWGWPWGQSIVF GMCLSCASTVVLLKGLESRGILESGDGQIAVGWLVVEDIMTVLILVLLPPLASLLGSPLQ NTEASLPLWQIVGITLAQVFGFIILMLVVGKRLLPWLLRQVAKTGSRELFTLSVLVFAIG IAYGAAQIFHVSFALGAFFSGMVMRESRYSHRAAMESLPLRDAFSVIFFVGVGMMFDPKV LYEQPLHVLAVLAIIILGKGLVAFGLVLLFRYTLHTALTVAAALSQIGEFSFILAALGLQ LKILPQEGMSLVLAGAIISIALNPFAFATVGPARDFIKKRWGFARRMDARIDPMALMPDS VGSDILHGHVVLVGYGEKGKIILEELLQRHLSVVVVDDHHSVIEELRERNVNSIYGDATD PAVLIQAHIHEAAILVLAIENEILCRKIVETAKILRPTIETVMPAENEEDAKALKADGVA QAFVPDELLAQAIVQFTMSRFGKESEDQKIREEEAEERKAVERGAL Prediction of potential genes in microbial genomes Time: Fri May 13 06:08:29 2011 Seq name: gi|301349822|gb|ADCQ01000028.1| Burkholderiales bacterium 1_1_47 cont1.28, whole genome shotgun sequence Length of sequence - 19219 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 10, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 354 - 385 4.8 1 1 Op 1 16/0.000 - CDS 410 - 1015 693 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 2 1 Op 2 5/0.000 - CDS 1026 - 2363 1625 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 3 1 Op 3 . - CDS 2368 - 3423 1374 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 3639 - 3698 6.2 - Term 3651 - 3682 -1.0 4 2 Tu 1 . - CDS 3701 - 4504 823 ## COG1414 Transcriptional regulator - Term 4524 - 4556 1.9 5 3 Op 1 . - CDS 4564 - 6564 2193 ## COG0247 Fe-S oxidoreductase 6 3 Op 2 . - CDS 6581 - 7078 278 ## COG1514 2'-5' RNA ligase 7 3 Op 3 . - CDS 7084 - 8142 1231 ## COG0167 Dihydroorotate dehydrogenase - Prom 8242 - 8301 4.6 - Term 8288 - 8339 8.2 8 4 Op 1 . - CDS 8374 - 8937 441 ## COG1051 ADP-ribose pyrophosphatase - Term 8952 - 8983 2.7 9 4 Op 2 . - CDS 8992 - 9546 466 ## gi|302860824|gb|EFL83901.1| conserved hypothetical protein - Term 9558 - 9604 13.3 10 4 Op 3 . - CDS 9632 - 10588 1189 ## COG0385 Predicted Na+-dependent transporter - Prom 10774 - 10833 10.9 + TRNA 10959 - 11035 79.7 # Met CAT 0 0 + TRNA 11115 - 11191 79.7 # Met CAT 0 0 11 5 Tu 1 . + CDS 11633 - 13039 422 ## Veis_4165 phage integrase, N-terminal SAM-like protein + Prom 13127 - 13186 5.5 12 6 Tu 1 . + CDS 13272 - 13523 307 ## gi|302860827|gb|EFL83904.1| hypothetical protein HMPREF0189_00982 + Term 13541 - 13575 2.7 + Prom 13547 - 13606 7.9 13 7 Op 1 . + CDS 13708 - 14517 608 ## COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II 14 7 Op 2 . + CDS 14538 - 15368 629 ## COG0384 Predicted epimerase, PhzC/PhzF homolog - Term 15120 - 15148 -0.1 15 8 Tu 1 . - CDS 15382 - 16044 612 ## COG1272 Predicted membrane protein, hemolysin III homolog - Prom 16094 - 16153 4.6 16 9 Tu 1 . + CDS 16263 - 16814 691 ## COG1268 Uncharacterized conserved protein + Term 16839 - 16872 2.2 + Prom 16821 - 16880 4.6 17 10 Op 1 . + CDS 17015 - 17326 367 ## gi|302860052|gb|EFL83129.1| fumarate reductase flavoprotein subunit 18 10 Op 2 . + CDS 17331 - 18872 2227 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 18889 - 18937 6.5 Predicted protein(s) >gi|301349822|gb|ADCQ01000028.1| GENE 1 410 - 1015 693 201 aa, chain - ## HITS:1 COG:dmsB KEGG:ns NR:ns ## COG: dmsB COG0437 # Protein_GI_number: 16128862 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 2 198 3 197 205 238 59.0 7e-63 MTQLGFFVDVSKCSGCKTCAVACKDAHNLPVGMNFRKVHEYAGGNWKQAADGSWTQDVFG YYVSLGCNHCSDPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYYAPVLDET AHKMRKCDACFDRLQRGLQPICVESCPNRAIEFGEIEELRKKHGKLAEVAPLPSASKTQP NLVLVVPAQARPAGDTSGTEY >gi|301349822|gb|ADCQ01000028.1| GENE 2 1026 - 2363 1625 445 aa, chain - ## HITS:1 COG:ECs0979 KEGG:ns NR:ns ## COG: ECs0979 COG0243 # Protein_GI_number: 15830233 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli O157:H7 # 1 444 345 784 785 454 52.0 1e-127 MGTTKPCFISQGWGPQRQANGEETARAIAMLPILLGQVGLPGTNPGDAEGNSSLPAVYLP IGKNPVKATIPVFMWTDAIVRGKDMTDITDGMRGVKKLDHDIKMIVNSGGNTTINQHSDS NATDKILRDTSKCEFIVVCDNMMTPTCRYADILLPDVLGTETDDIACQGGSNGGTTSMLP MHKAVEPQWDQKTSYEICRLIAKELGKEQEFTEGRTQLQWLEWCYNETRKKVPQLPDWDT FWKGGPAQVYGWRKNPVALSEFRADPVKNPLKTPSGKIEIYSERLNNIANTWKLNPGDVI SPIPIYFRNWEMYGDELQKKYPLQCYGFHHHGRIHSTFHNLPWLREQHPDVVFMNVLDAK ARGINNGDLVQIFNDRGIVELPAKVTSRIMPGVVSIPQGAWYTPVNKNGNVVDVGGNINT LTSLRPSPLAKGNPQHTNLVEVRKA >gi|301349822|gb|ADCQ01000028.1| GENE 3 2368 - 3423 1374 351 aa, chain - ## HITS:1 COG:ynfE KEGG:ns NR:ns ## COG: ynfE COG0243 # Protein_GI_number: 16129545 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 11 338 12 348 808 366 55.0 1e-101 MFNLPQSTFGRRSFLRFSALSVAAGSFLMNPISKAVAQAVKEIEPFYWNACVINCGQRCP QRCFVKGGQVIRVETDNTAGDACDHRQIRACLRGRALRQRLYSPDRLKYPMKRVGERGEG KFERITWDEAIKTVADNLKRTVEKYGNESVYWQYCSGQQSLVNSRRAWWRLLNLMGGYLK YYGSYSTAQIGAAMPYTYGGRPGSDMSEIGNAKLYVTFGGNTLVTRGSGGGKGYQLECAK EKGHPKSIMIDPMYNDTVAAGMDQWIPIRPGTDAALVEAIAYELIKNNWVDQDFLDKYCV GYDEKTLPASAAKGSDYKSHILGKGKDGIAKTPEWAAKDYRYPGRDHCSAC >gi|301349822|gb|ADCQ01000028.1| GENE 4 3701 - 4504 823 267 aa, chain - ## HITS:1 COG:RSc1610 KEGG:ns NR:ns ## COG: RSc1610 COG1414 # Protein_GI_number: 17546329 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 2 254 5 256 266 254 53.0 9e-68 MDQSVSKANIQVLDRASAILRVLTQHHDPVNLKVISDETCLHISTCHRILSDLVRLRFVE KGASAGTYRLGLRFLQLGNLVRERISVRDTARTGMQRLHNLTRQTVNLSIRQNDNIVYID RIMRERPGIQVVRTIGATAPLHTTSSGKLFLAEDSFEQIRAYALRTNLEKSTPNSIGDID TLLTEISKIKTLGFARDEEELEMGVRCVAAGIRDDSGKLVACLSISSPASSFLEGWISEI KHTADDISEHLGYVATPGELYVRPDFT >gi|301349822|gb|ADCQ01000028.1| GENE 5 4564 - 6564 2193 666 aa, chain - ## HITS:1 COG:BS_ywjF KEGG:ns NR:ns ## COG: BS_ywjF COG0247 # Protein_GI_number: 16080771 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Bacillus subtilis # 23 665 11 694 705 327 27.0 5e-89 MNGVDIVTRPGFWNIPVWAIIGIYVLGIAAAICCAVGIRKSYLLWRAGKPYAMDKETKRR WGFFVKEGLEQKRIIRKPLGSWLHFWIFWGFVFLFFGTCLAVLDWDIGKLVFGKQFLAGN VYYFYKFILDIAGVVCLIGLGMAFYRRFIKQGKQYEKSVRFLWILGSLAVIILTGYIVEA LRLAAENPPYASCSPVGNFLAKVFYSGMSKEQLEAQHLYMWILHGVISLMFVAAIPMTYF AHMYKSPTSIYWQRTKPRGLVEKIDNIEEQESFGISKFGQFNWHDRLNFDACVECGRCTS VCPVNRAGGPLDPREIILSLKKRMMEGYTKTEEVLVPDVVSKESLLACTTCGACVEQCPS RIEIVNTIQQMRRSLALEEGQFAEGVAKTLQNIQSVGNPWGLDPDTRWAWLEGLDVAFAE PGVHYDILYWVGCSAAYDKRNQKIAKAMIKILKHSGLSFAVMQEEMCNAEFARRVGEEYL YQIQTQTNIDNLRQYNFSRLLATCPHCFNTLKNEYPEFERGQFNVISHLQFIAEQMDSGR LKAELSEKERVAIHDACYYARYNGIVNAPRFDLNKVKGLETVDPKEWGTCTTCCGAGGGQ FWTDTDAPERLNVIRLKAVVNDTGCDKVATSCPFCLSMFDSAKSQEKSLSEISISDIAEI IAKNLK >gi|301349822|gb|ADCQ01000028.1| GENE 6 6581 - 7078 278 165 aa, chain - ## HITS:1 COG:PH0099 KEGG:ns NR:ns ## COG: PH0099 COG1514 # Protein_GI_number: 14590050 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Pyrococcus horikoshii # 1 127 1 130 184 60 32.0 2e-09 MKCFIGLPAAPSVINKLVDAQDRALSFDAGARPVPKENFHLTLAFIGEIEPDKARLIAQL LPLTTDFNGKSWLIDNSGLFIRPQVAWVGGSASPEIEHLARESREILDRLHISYDKGRFK PHITILRKSHLAEPVIQHPFEWPILRPRIFESRLNSDGRREYVPL >gi|301349822|gb|ADCQ01000028.1| GENE 7 7084 - 8142 1231 352 aa, chain - ## HITS:1 COG:RSc1619 KEGG:ns NR:ns ## COG: RSc1619 COG0167 # Protein_GI_number: 17546338 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Ralstonia solanacearum # 1 345 2 344 344 343 50.0 3e-94 MNSIYKLAKSVLFRFTPEQAHHIILSNLDWATQLGAQKLVTRSFPENPIEIMGLRFPNCV GLAAGMDKDGEHVTAFGALGFGSVEIGTVTPKGQPGNPKPRLFRLIPDEAIINRMGFNNV GAIQVAKNLQSARAFRNRGGILGINIGKNKVTPNSEALSDYKKCMDRLYTSGDYIAINIS SPNTPNLRDLQADAELDKLLLGIAEHRQRLADENDGKIVPIAVKIAPDLSDDGVKHALDI IVKHGMNGVICTNTTISREPVEHSPLAKETGGLSGKPLMARSTEVTRMASEHLQGALPII ASGGIMSAQDAVEKMEAGASIVQLYTGFIYKGPELIADCSEAIAQWRDQHGR >gi|301349822|gb|ADCQ01000028.1| GENE 8 8374 - 8937 441 187 aa, chain - ## HITS:1 COG:RSc1618 KEGG:ns NR:ns ## COG: RSc1618 COG1051 # Protein_GI_number: 17546337 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Ralstonia solanacearum # 8 171 3 165 195 168 48.0 5e-42 MSKKPILFCTQCGAPVERKIPEGDDHERYVCTACGEIFYENPLSIVGTLPVWEDRVLLCR RAIDPRKGYWTLPAGHQEMKETTRDGAARETQEEAGIDFRIADEPYVYLDLAHASQSHVI FLAAMESPEANPGPESFEARLFSEDEIPWDKIAFNSVDKILRLYFEDAKTGNFPFHYIER HKQGKIS >gi|301349822|gb|ADCQ01000028.1| GENE 9 8992 - 9546 466 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860824|gb|EFL83901.1| ## NR: gi|302860824|gb|EFL83901.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 184 10 193 193 361 100.0 1e-98 MYYIPTTYLTVRDDEGPIVFQREDLMRYSGNRGLIASGVTFRLLNAAFEDLCPNEIPRRE YFRFRTSFPGDEVRDGIELVTRAVLKGRYFVDTSIAPDFAPQTPANGAMYFEVAYLDRAF AYSFDHHIFTKEWAEEVIKHQEGSLSEEEHARYLEYKYEVLGKLLTRMNVFNYREPIPVS RFNR >gi|301349822|gb|ADCQ01000028.1| GENE 10 9632 - 10588 1189 318 aa, chain - ## HITS:1 COG:PA3264 KEGG:ns NR:ns ## COG: PA3264 COG0385 # Protein_GI_number: 15598460 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Pseudomonas aeruginosa # 1 308 1 308 311 310 58.0 3e-84 MAFLASVSQFLGKTFALWVLVFAGLAYVSPDSFKFFAPYISPLLGIIMFGIGLTLKASDF SEVFRRPMAVAIGTLGQFTIMPILAWLLCLIFNLPPDIAVGVILVGCCPGGTASNVMTYL ARGDVPLSVTVSSLSTILAPIVTPALIYLFAHSWINVNPVAMFWSIIQIVILPIILGLIV KAIFKSKIDAAVTALPAISVIAIIMIVSAVVAVSQKKIAEIGLLVFAVVVLHNGLGLLLG FFLGKITGMDVAKCKALSLEIGMQNSGLGVALATAHFNPIAAVPSAIFSVWHNISGPIAA AIYRRMQDKGSADQYDPT >gi|301349822|gb|ADCQ01000028.1| GENE 11 11633 - 13039 422 468 aa, chain + ## HITS:1 COG:no KEGG:Veis_4165 NR:ns ## KEGG: Veis_4165 # Name: not_defined # Def: phage integrase, N-terminal SAM-like protein # Organism: V.eiseniae # Pathway: not_defined # 37 345 46 373 386 80 24.0 2e-13 MKEFSKRRTDAVKGLRRYRFLFPPKNKYCLVGLKRHPDNWQLVVLTLCRIYNCFHSTKNK CCSRETSEGRKKFYMKFFKYAAKEFRIDPRQLKTEHVEAYFHHKITERLNRGVEPKVIAK RIDNELSHLKFFAWWISKPNCIPKFSKIMKAETFRLENCPMSNFRSSHTDTSALRKKVND AFKINDYLGVQVMAMAYFGLRPAESVSLEHQESFCSEGGRPFIHVLKGSKGGKPRKILMK TVDQHDAFEQLSSFCTERGIELFRNPNLSVQEALRLQRKQLVEELGLSKEVFEGSAYSMR HSFASRMMDGYNPNGERSSLEVSEDLGHHRTEVTAVYVGNMERAGEDTIPGLLTALVSNP MHSSTEDRLKMFFRELLVSHTFLGFSLLFWCAYTHNEGRDLEALAARKQAILGKKRNLYT EEVLMEKLSSISTKSTAEQFLIQFNQCCPADWIEKNVMAPFDANLFFK >gi|301349822|gb|ADCQ01000028.1| GENE 12 13272 - 13523 307 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860827|gb|EFL83904.1| ## NR: gi|302860827|gb|EFL83904.1| hypothetical protein HMPREF0189_00982 [Burkholderiales bacterium 1_1_47] # 1 83 1 83 83 133 100.0 4e-30 MFSKLEKKTVRHMMESVGLIALGYIIAVAGAESTAVIIAGLLVMLAGWFFLIRSGHGTLH PKARQVAAARQVEEQKVMAGAAD >gi|301349822|gb|ADCQ01000028.1| GENE 13 13708 - 14517 608 269 aa, chain + ## HITS:1 COG:PH1382 KEGG:ns NR:ns ## COG: PH1382 COG1237 # Protein_GI_number: 14591185 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily II # Organism: Pyrococcus horikoshii # 1 259 8 264 274 102 29.0 8e-22 MKFTVVIDNYCAKSGMLAEWGYCSLLETEHGNVMIDTGGTGHVLRHNLDFLKIDLKKVRA LVLSHSHHDHISGLLDIVFSCPGIPIYAGKGIEIERRGDADASRRSGGVPVGHFPNAHLI EDYVEIVPGVYAFRVPEQNRRSQYVCCRNMWEVAPDGQIIADRFEDDVSLAVKGEKGWSL LLGCAHAGLPNIMQRAKDLFAIERLHMVVGGSHLCGVDPEDYGVWFDRLAEFPVEKWRLN HCTGFKAAAAMAARFDDVDWAGAGCRYVL >gi|301349822|gb|ADCQ01000028.1| GENE 14 14538 - 15368 629 276 aa, chain + ## HITS:1 COG:PA2770 KEGG:ns NR:ns ## COG: PA2770 COG0384 # Protein_GI_number: 15597966 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 5 257 6 257 259 220 44.0 3e-57 MIKQFIADAFTDKIFHGNPAAICLPERWPDDKLMQDIASENNLSETAFVVKEDSGWKLRW FTPGGEIDLCGHATLATAFVLMNFVEPDLTEVQFSTLSGKLSVKKKNDLYEMDFPAYELK RIEVTEAMKKAIGCKPLEAWIGRDLVCVLENEDQVIQAKPDLEKAKALDGLLLHITAKGK DKYDCVSRTFAPKLAVDEDPVCGSGHCHLVPLWSEKLGKKEILAYQTSSRGGVLYCELDG KRVKLAGKAALYSRGELCIEVYRASMQTGVCRLYTI >gi|301349822|gb|ADCQ01000028.1| GENE 15 15382 - 16044 612 220 aa, chain - ## HITS:1 COG:CAC0947 KEGG:ns NR:ns ## COG: CAC0947 COG1272 # Protein_GI_number: 15894234 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Clostridium acetobutylicum # 12 220 3 211 211 174 45.0 2e-43 MDCTYSGFLRTQEKFYTCGEEIANAISHGLAVVASIVGLVFLILYGIRHGNALAVTTFSI FGSSLIVLYLASTLYHAIPNVRAKKALQYVDHSCIFLLIAGTYTPFMLNLMPNWIGITIC TACWIIAAFGIIFQPWLMKKSDKLNTFLYLFQGWLVLFAFKPVVEALPVTGLVLLVAGGL LYSFGTIFYNWQRLPYHHAVWHLFVLGGSVTHYFAVMYTI >gi|301349822|gb|ADCQ01000028.1| GENE 16 16263 - 16814 691 183 aa, chain + ## HITS:1 COG:mlr7429 KEGG:ns NR:ns ## COG: mlr7429 COG1268 # Protein_GI_number: 13476177 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 6 176 76 243 254 123 43.0 2e-28 MKVFAQNRTAAFDKRAVIKCAAAVALLVAASKVSFAIGPVPLTLQTFAVAVVGAWLGTRQ GVAAVIAYLALGFAGLPVFATPLCGPAALMGPTAGYLVSFPMAAAISGLLAERGWTGKRV FASFISQYAANIFIVAFGALWLSASIGVEKAVLVGFVPFVIGALLKAILGTAVLYAKELS SRQ >gi|301349822|gb|ADCQ01000028.1| GENE 17 17015 - 17326 367 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860052|gb|EFL83129.1| ## NR: gi|302860052|gb|EFL83129.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47] # 43 99 52 108 110 62 52.0 7e-09 MKVKTLLSFAAALCCAAAFSMSAQAQLKNSPMHANLPDNATTKDCLVCHQSYQAVAQKTA KMNPNPHSNHRGEQNCTNCHSVKGKPHLECNDCHTFAIKMKGE >gi|301349822|gb|ADCQ01000028.1| GENE 18 17331 - 18872 2227 513 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 15 505 16 474 484 168 31.0 2e-41 MTSVSRRTFLGTAAAASVSAVAAPAMAASTSGNNLPAKWDDTVDVVVLGCGGAGMMAACQ AHDAGGKVAVYDAGQSPFHTATNLCGGLFTAWGSKMQNADPEGRKDSWQQFAEDIMAYGN YMSLKEPVYCFAKNSGKAFDFLEDAGLAKHHLEPYAGHSRLRAHRQDSFKGRDYIEVLVK QLDKRGIKINHGMGVTKFYYDPATNTVVGVQVGEGDKAKNVKANKGVIMATGGITGTPQS LDRWVPSVAGKGVAIGGPKNDGTAMMVAVRDVGVPLSHMQYIASYPCGIVVNGRNGPYCR WWFITNNGGILVNKNGQRFITEKEGICHVTPSLASQPDGCHYVLCDQAGWDRTLSKIKLG ALIGLPSWPAERVEAEFKVGKNLWKCDTLEELCQKSGMNLDGLKKQIATWNEAAKNHNDL QFGRSDKDMYPLGKGPYYMIRMEPWNNLSCGGVRVNEDLQVLGWDMKPVNHFYAAGETVA GVHGAFYCGGNACGFAHTSGWVAGQKVMGKQIG Prediction of potential genes in microbial genomes Time: Fri May 13 06:09:04 2011 Seq name: gi|301349821|gb|ADCQ01000029.1| Burkholderiales bacterium 1_1_47 cont1.29, whole genome shotgun sequence Length of sequence - 3303 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 914 - 1690 435 ## gi|302860833|gb|EFL83910.1| conserved hypothetical protein 2 1 Op 2 . - CDS 1687 - 2658 648 ## COG0583 Transcriptional regulator - Prom 2725 - 2784 10.6 3 2 Tu 1 . - CDS 3066 - 3302 271 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349821|gb|ADCQ01000029.1| GENE 1 914 - 1690 435 258 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860833|gb|EFL83910.1| ## NR: gi|302860833|gb|EFL83910.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 258 1 258 258 498 100.0 1e-139 MTKVQYSFAQLGESEIFEPYLSSELKKNSDLWKPTEFELPLNDPGLAAAFLTLIQPDAVF YVPRFSDRSFESKSANYLAALSQALETKEALLVSWLQPEESIPPFISCEHLLIRLPEVFY CSSTKNLITDWIDKILSRKRITVSGNKPLRLIGRHLLVQMTVAAALKCLANPGFDGVYKL AANGETSLFELVSFIHSILARLLPNHKLAKLSFAEEEPVPLSEEFDTSFMENFNVILPGW RTGVEETIVAFLVHRKLF >gi|301349821|gb|ADCQ01000029.1| GENE 2 1687 - 2658 648 323 aa, chain - ## HITS:1 COG:SMa1602 KEGG:ns NR:ns ## COG: SMa1602 COG0583 # Protein_GI_number: 16263326 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Sinorhizobium meliloti # 2 294 10 295 302 89 24.0 1e-17 MSTVSDLDTWRLFFKIVSRGSIAKVSEEIGVEASSISRRINKLEKDLGVELFRRKGKQLV LTSAGSVAYSRMRRIVFDAASLFKDLQVARDNDRDLITIACPIGLSEIIMPIAISKYLEF NPDVSVSMRSLSYVELMTSDAITSYDVMLSVTPLNIPTRDSKLIAGISFMLAATPQYLNS LKYPIRSPRDLSEHPIFSFFSRNRERNMVLRKGSDYFPLHFHAHMRLNNPGGIKQVVMRS KGIGAYCPVYYYLDELANGTVCEVLPEWKFPVQQIYISRKDRDRVAVNRFVHWLIDYFEH CPGLVPPSYEGLWVGDFVDGVPV >gi|301349821|gb|ADCQ01000029.1| GENE 3 3066 - 3302 271 78 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 78 518 595 595 160 100.0 3e-38 KAGKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPETPE DVQEEPEAETLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 06:09:32 2011 Seq name: gi|301349820|gb|ADCQ01000030.1| Burkholderiales bacterium 1_1_47 cont1.30, whole genome shotgun sequence Length of sequence - 6811 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 168 161 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein - Prom 188 - 247 5.2 + Prom 291 - 350 6.8 2 2 Tu 1 . + CDS 557 - 2005 1325 ## COG0531 Amino acid transporters + Term 2023 - 2063 7.1 3 3 Op 1 3/0.000 + CDS 3734 - 4528 735 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 4 3 Op 2 . + CDS 4543 - 5334 979 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 5432 - 5479 10.5 - Term 5406 - 5474 10.5 5 4 Tu 1 . - CDS 5475 - 5939 605 ## gi|302860839|gb|EFL83916.1| hypothetical protein HMPREF0189_00995 - Prom 6146 - 6205 11.2 + Prom 6512 - 6571 4.5 6 5 Tu 1 . + CDS 6729 - 6810 94 ## Predicted protein(s) >gi|301349820|gb|ADCQ01000030.1| GENE 1 3 - 168 161 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 55 1 55 595 114 100.0 2e-24 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKIGTILGGQKDGKIR >gi|301349820|gb|ADCQ01000030.1| GENE 2 557 - 2005 1325 482 aa, chain + ## HITS:1 COG:RSc1588 KEGG:ns NR:ns ## COG: RSc1588 COG0531 # Protein_GI_number: 17546307 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Ralstonia solanacearum # 10 420 37 452 476 118 24.0 3e-26 MREAVTITAGSVIGVGLFTTGSNVVGNLGIEVIFATLLALLVSIYPALLYAEMGAALPYA GGTYQFASLGLGKAVGVLAGWNFIISLVAVTGGEALAFSYYFKTLCLAFGWQIPLSDVAV ALIVTIVFIIANVFGVRLTGRLQNGFMFFFWGVAAIWFLTMIPNIELPNFVKSPEFIAKD KDFTFIGAVCMIWWCFAGFEACVAMGEEIRFPKINIPRAMFLAPFVVFCVNALFQWYLIG ITPVEKLASLATAEAPYAEAMKAAGILGFPLALLAAGIAFGGDFSTLNASISTTPRYLFT MARDGAMPKIFAKVSHRYQTPYVAVITLGVLTVALIATNSLLYIAELSLFADLFYYVLGI LAAWGLRKKHPELKRSYKAPLIMVGAPVSALIYLYMMTELSNEAFYTGVIWCLLGIAIYW CCSKYYGAGASFKLDEKASGVDEIPTPEEKRSMDREYHLWWFLVGGLSIVATLLYLLPYL MH >gi|301349820|gb|ADCQ01000030.1| GENE 3 3734 - 4528 735 264 aa, chain + ## HITS:1 COG:FN0658 KEGG:ns NR:ns ## COG: FN0658 COG1464 # Protein_GI_number: 19703993 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Fusobacterium nucleatum # 13 264 8 261 261 243 51.0 2e-64 MQRRQLIKGLAAGAIVSTLLPAFAAEPVTLKVGASPLVTGDILEFVKPALAKKGINLKII EFTDYIQPNLALADKEIDANLFQHKPFMDKFCQDRGLKLTALPGIFIAPIALYSKKIKDV KELKKGDTITIPNDPTNGGRALQLLAGAGLLKLKEGVGHAATVEDIIDNPLRLRIVEVEA ATLPRTLDDARAAVINQTYALPAGLNPVKDSLLIESKDSPYANMVAIRTGDNRPELVELN NALHTPEVKQFILEHYKGSLIPSF >gi|301349820|gb|ADCQ01000030.1| GENE 4 4543 - 5334 979 263 aa, chain + ## HITS:1 COG:AGl761 KEGG:ns NR:ns ## COG: AGl761 COG1464 # Protein_GI_number: 15890496 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 263 21 259 259 278 61.0 6e-75 MNKRNFLITAALSAALCFFGTANAAETLKIGASPVPHADILKVVQPELAKKGIDLKIIEF SDYVQPNLALSDKDLDANFFQHLPYLEAFSKDHRLNLVSAGAVHIEPMGVYSKKVKNLTD LKKGASVAIPNDPTNGGRALQVLAAAGLIKMKDGVGVNGTPLDITDNPKRIRIVEVEAAT LPRALDDLDAAVINSNYALGAKLNPTKDAIAIEAKDSPYANVVAVRAGDENKPAIKELMS SLHSPEVKKFIGDKYNGAVVPAF >gi|301349820|gb|ADCQ01000030.1| GENE 5 5475 - 5939 605 154 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860839|gb|EFL83916.1| ## NR: gi|302860839|gb|EFL83916.1| hypothetical protein HMPREF0189_00995 [Burkholderiales bacterium 1_1_47] # 1 154 1 154 154 287 100.0 1e-76 MSKYTNGALQVLETADKDINQTFGYTEETNECVFCSTRRESGWVTVEKSGIISKIGEGIA ATLGIAAGYLLRDLIVDQAVFQVKEAQLNRIGKTEVRMKDAAGSIFWARLTSKGENRLLI EDIDIEKNFELDGEDLIEEQEREFSRFGMTPSFQ >gi|301349820|gb|ADCQ01000030.1| GENE 6 6729 - 6810 94 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVIYTDVLVIGAGLAGLRMAVGAKRR Prediction of potential genes in microbial genomes Time: Fri May 13 06:09:54 2011 Seq name: gi|301349819|gb|ADCQ01000031.1| Burkholderiales bacterium 1_1_47 cont1.31, whole genome shotgun sequence Length of sequence - 4001 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 317 229 ## Tmz1t_2128 transcriptional regulator, MerR family - Prom 396 - 455 1.7 + Prom 293 - 352 4.5 2 2 Op 1 36/0.000 + CDS 510 - 2495 2866 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 3 2 Op 2 . + CDS 2515 - 3369 1070 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit + Term 3407 - 3442 4.1 + Prom 3451 - 3510 3.4 4 3 Tu 1 . + CDS 3715 - 4000 371 ## COG1027 Aspartate ammonia-lyase Predicted protein(s) >gi|301349819|gb|ADCQ01000031.1| GENE 1 2 - 317 229 105 aa, chain - ## HITS:1 COG:no KEGG:Tmz1t_2128 NR:ns ## KEGG: Tmz1t_2128 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: Thauera # Pathway: not_defined # 28 88 13 73 159 63 52.0 2e-09 MDLKRSKTKLSCIFAQTVSSKNLLTIDELSQVSGLSKRTIRYYVNGGLLDRPSGETKNAR YDASHLEQIRNIKALREKGYTLARIVELKRQTHQEVLNRREIGEP >gi|301349819|gb|ADCQ01000031.1| GENE 2 510 - 2495 2866 661 aa, chain + ## HITS:1 COG:Cj0409 KEGG:ns NR:ns ## COG: Cj0409 COG1053 # Protein_GI_number: 15791776 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Campylobacter jejuni # 1 656 1 658 663 826 61.0 0 MKVIYTDVLVIGAGLAGLRMAVGAKRRGHDSIILSLVPPKRSHSKAAQGGMQASLANVIK GVGDNEDVHFGDTVRGSDWGADQEVVRMFVNTAPKAVRELAAWGVPWSRITPGDRQVIIN GEKVTITERKEAAGLIGQRDFGGTKKWRTCFVSDGTGHAMLNAVSDRAIALGIPIHERVE AIALIHDGSRCYGAVVRDLITGELIGYVARATAIATGGAGKIFRVSTNAQICEGTGHAIA LETGVAMCGNLEAVQFHPTGIFPAGILVTEGCRGDGGLLRDVDGHRFMPDVEPEKKELAS RDVVSRRMEERIAQGKGVKSRFGEHLWLDITLLGENHIKHNLREVYEICHYFLGVDPTKD WIPVRPAQHYTMGGVRTNPNGESQTLKGLFAAGEAACWDMHGFNRLGGNSVAETVVAGMI IGETIADFCDKPENAIDIPTRVVYDFIKREQSKLDAFVKNNGKENMAEIRTRMQEIMTTK VGIFREGEKLKEAVEELEDLYKKSFNVAVKNQPGANPELVYAYRTQKMLRVALGMALGAS LRTESRGAHFRVDYPVRNDAEWCKRTLSTWKNESDTLPTITYQDLDISKMELPPGWRGYG AKNYIDNPETPVRQKQVDEIRAKLESEGADRFAVQNALMPYLQLLPEDLRGKNERIDEPL S >gi|301349819|gb|ADCQ01000031.1| GENE 3 2515 - 3369 1070 284 aa, chain + ## HITS:1 COG:HP0191 KEGG:ns NR:ns ## COG: HP0191 COG0479 # Protein_GI_number: 15644820 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Helicobacter pylori 26695 # 27 263 6 242 245 275 52.0 9e-74 MADTTQQMAAAEEKKEDAVPQQAKAHRMLQVSILRYNPADPDSVPHLQTYSVSETDSMTL YILLNELRDTQDPSLQFDFVCRAGICGSCAMLVNGKPTLACRCLTRDLPDHFTLAPLPGF ELIGDLSVNTGKWMRGMSERIQSWCHLNDDNVNLSKIETPMDPHLAEEIYLLDRCVECGC CVASCGNFRMRPDFVGAVAINKISRFRLDPRDHRNDADYYEILGTESGVFGCMSLLACHD FCPKDLPLKTQIAFMRRKMAEQGIMGKEEPSLKRVIPLRELKLD >gi|301349819|gb|ADCQ01000031.1| GENE 4 3715 - 4000 371 95 aa, chain + ## HITS:1 COG:jhp0594 KEGG:ns NR:ns ## COG: jhp0594 COG1027 # Protein_GI_number: 15611661 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori J99 # 3 94 2 91 468 96 52.0 8e-21 MTRIEHDFIGDLEVPANAYYGVQSLRGKENFFITEEKNNQEIYFIIAFAYVKKAAAMANK ELGVVKPEVADAMIWACDQLINNTEKYRDQFITDW Prediction of potential genes in microbial genomes Time: Fri May 13 06:10:02 2011 Seq name: gi|301349818|gb|ADCQ01000032.1| Burkholderiales bacterium 1_1_47 cont1.32, whole genome shotgun sequence Length of sequence - 2806 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 + CDS 2 - 568 831 ## COG1027 Aspartate ammonia-lyase + Term 582 - 618 9.6 + Prom 629 - 688 4.5 2 1 Op 2 4/0.000 + CDS 749 - 2074 1885 ## COG2704 Anaerobic C4-dicarboxylate transporter + Term 2115 - 2145 0.2 + Prom 2260 - 2319 5.8 3 1 Op 3 . + CDS 2494 - 2806 499 ## COG1027 Aspartate ammonia-lyase Predicted protein(s) >gi|301349818|gb|ADCQ01000032.1| GENE 1 2 - 568 831 188 aa, chain + ## HITS:1 COG:HP0649 KEGG:ns NR:ns ## COG: HP0649 COG1027 # Protein_GI_number: 15645273 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori 26695 # 2 188 279 464 468 210 54.0 2e-54 AIKGLAVKMTKVCNDIRLLASGPRCGLKEINLPQLQPGSSIMPGKVNPVAAEVANQASFL AIGLDTTVMLAASAGQLELNVMEPVITFALYTQMKVMTNACDTLRTKLVEGVTANTERCK DYVMNSIGIVTLLKPHFGYQKCAAIAKEGYTTGKSLHQIVVDEQHLMTQAEWDATFNTQN LIHPKFVK >gi|301349818|gb|ADCQ01000032.1| GENE 2 749 - 2074 1885 441 aa, chain + ## HITS:1 COG:Cj0088 KEGG:ns NR:ns ## COG: Cj0088 COG2704 # Protein_GI_number: 15791476 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Campylobacter jejuni # 1 437 4 440 445 484 68.0 1e-136 MVILQIIVLLGAIFVGVRLGGIGIGYAGGAGVLILGLCLGMKPGNIPWDVILIIASVISA ISAMQLVGGLDYLVYIAEKILYKNPKYINYLAPLVTYVLTIFAGTGHTAFSMIPVIVEVA KGQNIRPSVPLSIAVVASQIAITASPVSAAVIYMTGVLEPFGWSYPTLLAVWLLTTFLGC MVTAFIMTMFCKMDLSTSTVYQERLKEGLVKPPVGMQEIKITSSAKLSVWIFLIGVIAVV CYASAISPAIGLIKPVIVTRDAAIMSLMLTVGALITVFCKAKLGDIASTSVFKSGMVACI CVLGVAWLGDTFVSGHTAQIKAFASETISQYPALLAVVFFLAAMLLYSQAATAKAITPTV VAALGITAAHPDNAYMLVACFAAVSALFVLPTYPTLLGAVQMDDTGTTRIGKWVFNHSFF IPGVLAIFFSVAFGFVVCGFM >gi|301349818|gb|ADCQ01000032.1| GENE 3 2494 - 2806 499 104 aa, chain + ## HITS:1 COG:jhp0594 KEGG:ns NR:ns ## COG: jhp0594 COG1027 # Protein_GI_number: 15611661 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori J99 # 3 104 2 101 468 113 54.0 1e-25 MARIEHDFIGDLEVPANAYYGVQSLRGKENFFITEEKNNQEIYFIIAFAYVKKAAAMANK ELGVVKPEVADAMIWACDQLINNTEKYRDQFITDWLQGGAGTST Prediction of potential genes in microbial genomes Time: Fri May 13 06:10:05 2011 Seq name: gi|301349817|gb|ADCQ01000033.1| Burkholderiales bacterium 1_1_47 cont1.33, whole genome shotgun sequence Length of sequence - 5171 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 257 191 ## Tmz1t_2128 transcriptional regulator, MerR family - Prom 291 - 350 5.0 + Prom 236 - 295 3.8 2 2 Op 1 . + CDS 317 - 1558 1294 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 1576 - 1611 4.3 3 2 Op 2 . + CDS 1624 - 3132 530 ## PROTEIN SUPPORTED gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 + Term 3162 - 3199 6.3 4 3 Op 1 . - CDS 3162 - 4145 752 ## COG0790 FOG: TPR repeat, SEL1 subfamily 5 3 Op 2 . - CDS 4149 - 4622 588 ## DMR_32530 hypothetical membrane protein - Prom 4709 - 4768 6.3 Predicted protein(s) >gi|301349817|gb|ADCQ01000033.1| GENE 1 2 - 257 191 85 aa, chain - ## HITS:1 COG:no KEGG:Tmz1t_2128 NR:ns ## KEGG: Tmz1t_2128 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: Thauera # Pathway: not_defined # 11 71 13 73 159 63 52.0 3e-09 MSSKNLLTIDELSQVSGLSKRTIRYYVNGGLLDRPSGETKNARYDASHLEQIRNIKALRE KGYTLARIVELKRQTHQEVLNRREI >gi|301349817|gb|ADCQ01000033.1| GENE 2 317 - 1558 1294 413 aa, chain + ## HITS:1 COG:STM1803 KEGG:ns NR:ns ## COG: STM1803 COG0665 # Protein_GI_number: 16765144 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Salmonella typhimurium LT2 # 1 409 1 427 432 152 26.0 1e-36 MHIIVVGAGVTGIACAHNFLKRGHNVTLIEKASTPNQECSFGMAGFMGPISVQMLCAPFK GKAGLASIFAKTRRLGWDVSIGQMKFLRALANARSADVWAANHGSLMTLARYSVGLTEFH ARLEDLSFEQVYGLLRVFTNAQAWEEAHKEESEKPGEWLTREEASRIDPSLENVPDPFLG CSYLPQELSGNGSYCSKQIQAINVSQKNLTMMYHTEVTGLMFDENNKVVGVKTDKGEIAS DAVVLCSNLGTKPLLDGKLELPTMQLTGWAVTATIDPMNVPPLHTLIFDNKDLLVTRLGN RVRVCGRYWLGESSHDMTDKVIEEIYEASCKLLPTTAQWTESTNWIGKCIVHPDSLPSCG ETPFEGLYLNICHGLNGWALSDGCAELLSDVIEKKTPAIDPTPYSPMRFVKRK >gi|301349817|gb|ADCQ01000033.1| GENE 3 1624 - 3132 530 502 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126666946|ref|ZP_01737922.1| Ribosomal protein S15 [Marinobacter sp. ELB17] # 27 455 25 472 503 208 33 6e-54 MSVSLLQIPQLRELEEKYARILGPGVLMERAGKAAADFISDLYPAPARVTVVCGPGNNGG DGYRTAIELLKKEYDVNVVQVAGKTPKSEEAIAALAEWEKLGRTTYTDPYDTPKADIVVD AIFGIGLERPLKDEFLDAAMWFNERRALHVSLDIPSGLNSETGTWVGDRAGCKADATISF LSGKVGLFTGLGPDACGRVKMENLGISIPLTKISLLEVKDFKHVCAPRLKNTSKADYGRL GVIGGGKGTVGAALIAARSGLYMGAGRVYVELLEDGMKLDPFCPELMFPGKINIDEMDAI VIGPGLGFTEQAKQRFIDCLKSKAALVIDGDALTMIAQDEEILSLVTHRFAHTVLTPHAA EAARILRLPVEEITKDRLSRALDLGILTGAVNVLKGAGTIVTQRSSVSWINPTGSPALAT AGSGDALSGMIGAMFAQHFELMDCVLSAVYLHGAAVEGLNSSVLAGDIAPLASTRLEELR ASYQRHFHPLKEEEKTIEWEDS >gi|301349817|gb|ADCQ01000033.1| GENE 4 3162 - 4145 752 327 aa, chain - ## HITS:1 COG:STM2007_2 KEGG:ns NR:ns ## COG: STM2007_2 COG0790 # Protein_GI_number: 16765339 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Salmonella typhimurium LT2 # 55 190 48 183 185 67 29.0 5e-11 MTGFFDKLPEISPKKQAPTQKPVFDPYSFLNLRPEPQTAEDRFKEAKELLSAESNTAIQY LKAAAEEEHAASLDFLGMLYATGQLLERDPKRAADLFRKAAVLGETNAKFHLAMALREGF GVRQNLDESFAWLRVAAKEKSPEAMFALAEAYDQGLGVETNPEIAETFFSQAALKGEKRA IMRMVRLTSEGSHLNPKLCLHWLFKGAAAKIPVCLLAVGRYWLETTPKSPVRGLGFLEEG ALSEDPDCLLELGFFWSSARFVAPDIVAAIVYCHLASTFGSWKASQKLSDLRALAQKDQL MEAAGIAAFPSSQLVVQEIIKRRNDGA >gi|301349817|gb|ADCQ01000033.1| GENE 5 4149 - 4622 588 157 aa, chain - ## HITS:1 COG:no KEGG:DMR_32530 NR:ns ## KEGG: DMR_32530 # Name: not_defined # Def: hypothetical membrane protein # Organism: D.magneticus # Pathway: not_defined # 11 122 148 253 275 74 32.0 1e-12 MAYPKSPAIALWNPVWTVIWSYIFTPVFGAFLQRTNWSEMGERDRTANSNMWMVLGLVFM FGYLILEPWLPESNYENFYFLGSYTLFYAAWVIFDGWAQVPFVRDRYGDNYHHRLWGKPI MLGAGGLVLWMMMSLTYVIGIITLFPDVLPPQLPPKP Prediction of potential genes in microbial genomes Time: Fri May 13 06:10:26 2011 Seq name: gi|301349816|gb|ADCQ01000034.1| Burkholderiales bacterium 1_1_47 cont1.34, whole genome shotgun sequence Length of sequence - 26451 bp Number of predicted genes - 28, with homology - 27 Number of transcription units - 20, operones - 8 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 870 506 ## COG1403 Restriction endonuclease 2 1 Op 2 . + CDS 876 - 1304 181 ## gi|302860853|gb|EFL83930.1| hypothetical protein HMPREF0189_01009 - Term 1107 - 1135 -0.0 3 2 Tu 1 . - CDS 1325 - 1702 515 ## COG0251 Putative translation initiation inhibitor, yjgF family 4 3 Op 1 . - CDS 1836 - 2315 452 ## COG3045 Uncharacterized protein conserved in bacteria 5 3 Op 2 . - CDS 2312 - 3529 1163 ## COG2267 Lysophospholipase - Prom 3632 - 3691 2.3 + Prom 3955 - 4014 3.6 6 4 Tu 1 . + CDS 4034 - 4975 710 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 7 5 Op 1 16/0.000 + CDS 5077 - 5880 916 ## COG0207 Thymidylate synthase 8 5 Op 2 . + CDS 5900 - 6406 461 ## COG0262 Dihydrofolate reductase + Prom 6446 - 6505 4.8 9 6 Tu 1 . + CDS 6527 - 6814 362 ## gi|302860860|gb|EFL83937.1| 4Fe-4S ferredoxin, iron-sulfur binding + Term 6829 - 6875 -0.6 - Term 6773 - 6809 3.3 10 7 Op 1 . - CDS 6889 - 7743 602 ## gi|302860861|gb|EFL83938.1| putative carboxymethylenebutenolidase 11 7 Op 2 . - CDS 7755 - 8330 641 ## gi|302860862|gb|EFL83939.1| hypothetical protein HMPREF0189_01018 - Prom 8568 - 8627 5.3 + Prom 8507 - 8566 6.7 12 8 Op 1 . + CDS 8598 - 9065 361 ## gi|302860863|gb|EFL83940.1| hypothetical protein HMPREF0189_01019 13 8 Op 2 . + CDS 9097 - 9366 199 ## ebB82 plasmid maintenance system antidote protein VapI + Term 9560 - 9599 1.0 - Term 9436 - 9483 9.1 14 9 Tu 1 . - CDS 9504 - 10943 1914 ## COG1027 Aspartate ammonia-lyase - Prom 11041 - 11100 3.7 15 10 Tu 1 . - CDS 11446 - 11922 341 ## BC1002_0703 DNA polymerase III chi subunit HolC - Term 11925 - 11964 7.1 16 11 Op 1 . - CDS 11982 - 12965 858 ## Ent638_0501 outer membrane autotransporter 17 11 Op 2 . - CDS 12986 - 15820 3194 ## COG0525 Valyl-tRNA synthetase - Prom 15978 - 16037 4.9 + Prom 16017 - 16076 4.6 18 12 Tu 1 . + CDS 16098 - 17195 844 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 17222 - 17255 -0.4 19 13 Tu 1 . - CDS 17201 - 17305 62 ## + Prom 17317 - 17376 3.1 20 14 Op 1 . + CDS 17534 - 18301 437 ## COG1073 Hydrolases of the alpha/beta superfamily 21 14 Op 2 . + CDS 18291 - 19256 364 ## COG0583 Transcriptional regulator + Term 19267 - 19299 3.1 - Term 19254 - 19285 2.1 22 15 Tu 1 . - CDS 19306 - 20265 928 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family - Prom 20336 - 20395 7.2 + Prom 20313 - 20372 7.9 23 16 Tu 1 . + CDS 20459 - 21424 451 ## COG0583 Transcriptional regulator + Term 21474 - 21506 -0.6 - Term 21420 - 21461 7.2 24 17 Tu 1 . - CDS 21500 - 22933 1363 ## COG1027 Aspartate ammonia-lyase + Prom 23003 - 23062 4.0 25 18 Tu 1 . + CDS 23126 - 24091 441 ## COG0583 Transcriptional regulator - Term 24064 - 24127 5.4 26 19 Op 1 . - CDS 24129 - 25295 640 ## COG1454 Alcohol dehydrogenase, class IV - Term 25302 - 25343 5.1 27 19 Op 2 . - CDS 25364 - 26149 620 ## COG0165 Argininosuccinate lyase - Prom 26189 - 26248 5.9 + Prom 26204 - 26263 9.0 28 20 Tu 1 . + CDS 26283 - 26451 169 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 Predicted protein(s) >gi|301349816|gb|ADCQ01000034.1| GENE 1 1 - 870 506 289 aa, chain + ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 6 272 147 427 427 80 28.0 2e-15 IEAVLRLLPVTKITVETASFDLQLLKNPDISGKEYQEGEQLGFWNIREYVLCRDGHVCQH CYGRSKDPVLNVHHLESRRTGGDSPGNLVTLCETCHKALHRGEITLKAKRGQSFRAEAFM GIMRWEVQNRLKASHPELEVNNTYGYRTKHARIANDIAKSHCADAFCIAGNLGAERLGEF FFQKQTRRNNRQSHKLSILKGGIRKRNQAPFEVNGFRLFDKVACKGEEGFIFGRRSSGFF DVRKLDGTRISAGISYKKLHLLEKRRTYLTEIRKEEVLPPLPEGRGLRA >gi|301349816|gb|ADCQ01000034.1| GENE 2 876 - 1304 181 142 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860853|gb|EFL83930.1| ## NR: gi|302860853|gb|EFL83930.1| hypothetical protein HMPREF0189_01009 [Burkholderiales bacterium 1_1_47] # 1 142 1 142 142 283 100.0 2e-75 MKAIPLLTICSACVLVSGCASDSTDYYLRDSFGFKEVCLVDNKNVPPSFFIALRQAIQDK GLQVRTVSKTEQSCPVTVYYEAKYNLAYLKDARLLLTTEGHPTDIVNLRKNVEPATLADP ASDSEPKIRDMVNRLLPRGTPW >gi|301349816|gb|ADCQ01000034.1| GENE 3 1325 - 1702 515 125 aa, chain - ## HITS:1 COG:PA5339 KEGG:ns NR:ns ## COG: PA5339 COG0251 # Protein_GI_number: 15600532 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pseudomonas aeruginosa # 2 125 3 126 126 126 49.0 8e-30 MKEIITTENAPAAVGTYSTAYKCGNMVFLSGQLGLDPVSGELPASFEAQCRQAFRNVFAI VKAAGGTPADIVRQTVYLTDLNNFAVVNKVMSEIFSAPYPARSCVQISALPKGGLIEVEA TVVLD >gi|301349816|gb|ADCQ01000034.1| GENE 4 1836 - 2315 452 159 aa, chain - ## HITS:1 COG:VCA0800 KEGG:ns NR:ns ## COG: VCA0800 COG3045 # Protein_GI_number: 15601555 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 13 150 14 151 160 186 67.0 1e-47 MKKLLIVAASLSALLLAGCSDKEVASVSLGVFTFKDIKLDAFTDPQVPGVTCHVAYINSP LQLSDPSNSSVSCVKTGEITQAMIDGIDKSADGEVVFKKSQSVFFKTLRIRRIFDAKNQT LVYLSYSTKIANGSFKHSISSVPLWGSQAYKPEGYLTKK >gi|301349816|gb|ADCQ01000034.1| GENE 5 2312 - 3529 1163 405 aa, chain - ## HITS:1 COG:YPO4014 KEGG:ns NR:ns ## COG: YPO4014 COG2267 # Protein_GI_number: 16124137 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Yersinia pestis # 63 317 108 371 487 76 25.0 7e-14 MNFKPLIIALPVAFLIGCASEPTPDMLPGGQPNFDTYAIQAKAYVAERRHYVTDDHVAEI EGNSPFEIRPKNPNGQAVLMIHGLGDSPWTFTDLGKTLADQGYLVRTMLLPGHGTRPADM IGVTSEDWTKVVNEQVALLKKQYPKIWLAGFSTGCNLALDYSEEHPDDVEGLLLFSPAMQ VRTSLIKLAPIADLFVTWLRAPDKKTAGDAPFKYNTVPMDAIVAFKHTMDTSNDYLTKNK ITKPVIVMMSQHDSIINTQSLVKVFDKALTNPASKIIWYGKLPDGKYSKKVVAKSDYLPE LRIKSFAHMSIPFSPDNVWYGKDGKFRYCRNSASAKDVQDCRNDPDVWYGAWGTHDGEHS FARLTYNPYFDWQAKQILKVMKSGEQKPRASGIIEKVEPQQKGLN >gi|301349816|gb|ADCQ01000034.1| GENE 6 4034 - 4975 710 313 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 23 306 15 299 306 153 31.0 5e-37 MSQTQTAKIYSDPPIKINRTLYGVLLATLASVFWGSMGVCVQYIFENTNTQPQALSSFRL LLSGTVLVILNLFLSRRPLLAVLSSLKGTAGIALSGLELLGAHLTFFIAIYYSNAGTAAI FLATTPLLAGIYLFLRGKKRFTAKEGLCCALAFFGVLLIVSKGDFSTFQFNWMAVFWGMI SAVFASIYSIQPKPLIDRWGVVPVASWGMMAAGIAGLFLANPIVTAEGLDAKAWLALSYI VLAGTVAAFWLYLACLKYISPVTAGLVVCLEPTSAYVFGIMFMNLKLGWIECVGIAMVIS QVFILSIRSKERS >gi|301349816|gb|ADCQ01000034.1| GENE 7 5077 - 5880 916 267 aa, chain + ## HITS:1 COG:ECs3684 KEGG:ns NR:ns ## COG: ECs3684 COG0207 # Protein_GI_number: 15832938 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Escherichia coli O157:H7 # 6 267 3 264 264 438 73.0 1e-123 MSRSDQYETFMRDVFEHGVEKSDRTGVGTRSMFGYQMRFNLQEGFPLVTTKKLHLRSIIH ELLWFLHGDSNVKYLHDNKVTIWDEWADANGDLGPIYGVQWRHWKTSDGGYIDQISNLIH QIKTNPDSRRLVVSAWNVGEIDKMALPPCHMFFQFYVAQGKLSCQLYQRSCDIFLGVPFN IASYSLLTHMIAQQCDLDVGDFIWTGGDCHIYNNHFEQVKLQLSREPRPYPKLIIKRRPD SIFDYNFEDFEIVDYDPWPAIKAPIAV >gi|301349816|gb|ADCQ01000034.1| GENE 8 5900 - 6406 461 168 aa, chain + ## HITS:1 COG:BMEI0609 KEGG:ns NR:ns ## COG: BMEI0609 COG0262 # Protein_GI_number: 17986892 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Brucella melitensis # 2 162 3 169 172 152 44.0 3e-37 MKPHISLIVARSRNGIIGKEGKLPWHLPEDLKFFKQTTMGRPVIMGRHTWESIGRPLPGR QNIVLTQDPAYKAEGATVVSSLDEALKHFGPDDIVFIIGGADLYRRALPLVDTAWVTEIE ADVEGDASFDPLNKDEWMLVWSEDHPKTEDQPLGYKFQRFERVKHTVY >gi|301349816|gb|ADCQ01000034.1| GENE 9 6527 - 6814 362 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860860|gb|EFL83937.1| ## NR: gi|302860860|gb|EFL83937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderiales bacterium 1_1_47] # 1 95 1 95 95 161 100.0 1e-38 MTKELMQLEVDSDLKKAFLACVSRAYNGKVEQGILDLMRIYVERAQGTPGQKMIKEKVKE YVYGGEVQAGLSPREMEKIFLNKTEEDIEAARLDK >gi|301349816|gb|ADCQ01000034.1| GENE 10 6889 - 7743 602 284 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860861|gb|EFL83938.1| ## NR: gi|302860861|gb|EFL83938.1| putative carboxymethylenebutenolidase [Burkholderiales bacterium 1_1_47] # 1 284 1 284 284 572 100.0 1e-161 MNCLSKLNTKTFVAASLLAGAGVTFASVGIAKGYNLSPLETYIIESFAQEQIDGFINSGA TTLFESPKIFYITPRALARQVKTDLSGAQKKYLGNYGIVKSFVSKTNKDKTRVQFDIPKP DYTLDLHLAKNADPDLAKEVSPGERHGFYCQITSVDKSSAVLSGCLPLRQFASLKRKQIE ALIHRYLAGEKVLDPNLPTYAMMAYMAVVSARLLPRDSVCRRTVEDEIIFTDADRRLCNQ EVADLWQRADSNPKFDKTMDNVVEELTKHGVDVSMINQAASSLD >gi|301349816|gb|ADCQ01000034.1| GENE 11 7755 - 8330 641 191 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860862|gb|EFL83939.1| ## NR: gi|302860862|gb|EFL83939.1| hypothetical protein HMPREF0189_01018 [Burkholderiales bacterium 1_1_47] # 1 191 1 191 191 382 100.0 1e-105 MQLTKKDLITKLIDAARKAGNANPFALGFIAFDDLRMKLEGPMTTTGQEWYATHPNDPLG MKDILTVPDDINYNKIVKEVFESLTSDGGLHLWVIPTEQLADVLKFLMSHPRFQGNLLDM DDEDPWDMPSINFENLCAEAENQFLSNQSINVVFEYKDADTGLVVHRVTLNERDFWFFVD EQQMKIADRRW >gi|301349816|gb|ADCQ01000034.1| GENE 12 8598 - 9065 361 155 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860863|gb|EFL83940.1| ## NR: gi|302860863|gb|EFL83940.1| hypothetical protein HMPREF0189_01019 [Burkholderiales bacterium 1_1_47] # 1 155 1 155 155 273 100.0 3e-72 MIKKASFLALVSCAVFSASCYAGQYAQALGDCVYDNLSREDKNVMTQWAFVTLGKTDAAK QITVIPESKNKQVNKEAKKRMTRLMTEACAREAANVALHESKSGLQDAAAQLGIRLAKEQ LKDKTDEALANLLNPGTANVLRGAEVLKGFFKKPQ >gi|301349816|gb|ADCQ01000034.1| GENE 13 9097 - 9366 199 89 aa, chain + ## HITS:1 COG:no KEGG:ebB82 NR:ns ## KEGG: ebB82 # Name: vapI # Def: plasmid maintenance system antidote protein VapI # Organism: Azoarcus_EbN1 # Pathway: not_defined # 1 83 1 84 99 72 42.0 5e-12 MPEMFDPPHPGSSLASALDALNLSAEQFASNLSVSSKSISQVIRGEAPITPELAVKFTSA ISGPDSAMWLRMQATYDDWQRKHHNPQEL >gi|301349816|gb|ADCQ01000034.1| GENE 14 9504 - 10943 1914 479 aa, chain - ## HITS:1 COG:BH1426 KEGG:ns NR:ns ## COG: BH1426 COG1027 # Protein_GI_number: 15613989 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Bacillus halodurans # 1 466 1 465 471 396 44.0 1e-110 MTDVRIERDCLGEMEIPNDQYYGIQTHRMEKVSGTANLPVIFYPDMHYALAQIKKAAAIA NGKIGAMPADVSKAIAQACDEMLTGKFNDQFPLDMWQGGGYTCVNMNVNEVIGNRANEIL TGHKGTEKVHPNTHVNMGQSTNDTIPSATHLGMIGRVDELIKQLDLLAASLRKKEEEFKD VVKVGRTCIQDALPLTLGQEFSGYASVVERMARKVRHLRPGCFEIVMGGSAVGTGFSAAP GYKDALYVELSKQYGEEVKPMENLFDGFQNPDFIVEVSGVLKEVAMTLSKICKDFRLMGS GPRSGFMEVNVPALSPGSSIMPGKINPTVPEMVIQISHQVVGNDVAISMAYDEGELDLNV WDATFYKCLFENFQLINSELEILRVHCVDGMTANKERCAQEANSSIALSTVVATALGYPM GVKVAHYCEQTGKNVREAVVEMGLMTVEEAKKLVDPMLMTNPHAAGPVVDAFKKEKKLI >gi|301349816|gb|ADCQ01000034.1| GENE 15 11446 - 11922 341 158 aa, chain - ## HITS:1 COG:no KEGG:BC1002_0703 NR:ns ## KEGG: BC1002_0703 # Name: not_defined # Def: DNA polymerase III chi subunit HolC # Organism: Burkholderia_CCGE1002 # Pathway: Purine metabolism [PATH:bge00230]; Pyrimidine metabolism [PATH:bge00240]; Metabolic pathways [PATH:bge01100]; DNA replication [PATH:bge03030]; Mismatch repair [PATH:bge03430]; Homologous recombination [PATH:bge03440] # 17 158 1 137 138 77 35.0 1e-13 MRTRLIQNIEYDKISVMSDLAFHTGVENRFKYACLAMRKAQRLNVSACVLLETDDELRRF DNMLWAFEPTSFIPHGRPNTLDMQRGGVALSTHAADLPDAELLVLLTHGAPIDTKALMER FPKIIDIVGRDDPELTEGRHRYVAYKRQGIEPTVVKRG >gi|301349816|gb|ADCQ01000034.1| GENE 16 11982 - 12965 858 327 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0501 NR:ns ## KEGG: Ent638_0501 # Name: not_defined # Def: outer membrane autotransporter # Organism: Enterobacter_638 # Pathway: not_defined # 101 327 1136 1371 1371 73 25.0 9e-12 MKLIRLAPLALAVFSAAASADMFTANLYDVNNINQDVIDSRLSMSGPLFNGWDRTFKQGD PWVEAYGMTHRINRTGDFGKFKNKGAGGVFGYDHVIADNFRLGLALNGGAGKLKWYDNEG EDDLKIDSHWYGANLYGTWTGKKVNVIANLGYSHQKDDGKDGIEDRNSHAINAGIRFETS FVAGGISFVPYYGVRFTHLSNGALKSDGTDNLEPGETPEPSSVNMSGSNIWQFPVGVNAG FEYTCAAGWKSRTMIDLAVIPTAGKRKTYFSGEEGGSGRFANSVTYRGKVGLQLTKGQHS FGFMYGAAAGAHGSFGQNVTLNYQFMY >gi|301349816|gb|ADCQ01000034.1| GENE 17 12986 - 15820 3194 944 aa, chain - ## HITS:1 COG:RSc2236 KEGG:ns NR:ns ## COG: RSc2236 COG0525 # Protein_GI_number: 17546955 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Ralstonia solanacearum # 6 942 5 964 968 1129 57.0 0 MSETQNKELAKSYDPASIEAKWYPFWEQQGYFKAGLEEGKPSFSIQLPPPNITGILHMGH AFNHSVMDSLTRFYRMNGYNTMWLPGTDHAGIATQIVVERKLEAQGKNRRDMPRDDFVNE IWKWKEYSGGNILKQMRRLGDTLDWDRLYFTMNDDLAKVVVDCFVDLYEKGLIYRGRRLV NWDPKLQTSVSDLEVEPKEQDGHLWEIRYPAADGSEGVVVATTRPETMFGDQAVAVNPED ERYKDLVGKKLKLPLTDREIPVIADDYVDKEFGSGCVKITPAHDFNDFEVGKRHNLEQVN IMTKTAHLNDNVPEKYRGMDRYEARKAVIEDLKAQGLLVGIKPHKHMVPLVPRTGEVVEP MISEQWFLAMSKPAPEGSRYPGKSLSDLGLEAVQENLVNIFPEQWQKVYKDWLSNIQDWC LSRQLWWGHQIPAWYDDKGNVYVAHTEEEAQQKAGEGVKLHRDEDVLDTWFSSALVPFST LINDPKAFDIYLPSSVLVTGYDILFFWVARMIMMTRFFTGRVPFKNVYIHGLVRDAEGNK MSKSEGNTLDPLDIIQGVDLESLVKKNTTGLRQPEKAPIVERKLRKHYPEGINEIGADAL RFTMAAYATLGRNVNFDVKRADGYRNFCNKLWNATRFVLMNIEGKDCGLDPNAPMEYSAP DQWIWSEFERTVQEVRKAFEDYRLDNAANAIYSFIWNQYCDWYLELSKVQLNQGNEAVQR ATRHTLVTVLEQTLRLAHPIIPFITEELWQKVSVVAGVRSENSVDSLMVQSYPVYDPAKV NTQADMTINELKAMVDAIRNLRSGMLVPPSKKVPLAISSRDGEARARAEKLTPYLQTLGR LEEVIFTDDLETVRPVGSAAPVAVVDDFSLMLIIKVDVAAERERLNKEITRLENEIAKAN TKLSNENFVKKAPAKVIEQERSRLASNEQLLASNKEQLSKLPQA >gi|301349816|gb|ADCQ01000034.1| GENE 18 16098 - 17195 844 365 aa, chain + ## HITS:1 COG:BS_yccC KEGG:ns NR:ns ## COG: BS_yccC COG0252 # Protein_GI_number: 16077338 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Bacillus subtilis # 7 365 10 375 375 342 54.0 7e-94 MHIKKCFTAIFISSAFLSAGLVNSHAAEAPVQQQKVAKPNVVILATGGTIAGSAASNTQM TGYKAGALGIDVLLQAVPEIHKVANVKGEQISNIGSESMNNKIWLKLAKRINELLAKPDV DGIVITHGTDTLEETAYFLNLVTKSDKPVVIIGAMRPATAISADGPVNILNAVNLAASKD AKGRGVLIAMNDNINGARDVQKTNTLRVDTFQSPELGYLGYFENGRPVFYKATTRKHTID TEFDVSNLNDLPRVDIIYSHVNDDGRMAEAAVANGAKGIVHAGTGNGSIHEAAEPALYDA AKKGIVVVRSARVPNGPTIESTAAWDKAGFVHAGTLNPQKARILLQLGLTKTNDPQKISE MFKQY >gi|301349816|gb|ADCQ01000034.1| GENE 19 17201 - 17305 62 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHQEKTSFLVYFLSWGLTQEKSPVYSGLRLISNL >gi|301349816|gb|ADCQ01000034.1| GENE 20 17534 - 18301 437 255 aa, chain + ## HITS:1 COG:PA3695 KEGG:ns NR:ns ## COG: PA3695 COG1073 # Protein_GI_number: 15598891 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 48 165 63 184 301 60 29.0 4e-09 MRYWSASLYGLESIKGKAKNLSDPTKPEISFEILVPKETGKIKKEKLKTLPVVLYFQSAQ FNMSYSMQQVAFLALESVPVILFDYQGVGETEGEARLDNLDKDAGAVWECVKNSDLIKGR KLVLFGQGVGADAALRFYLSHKDQVKGVVLESIYASQKGLIQERHGFILGDLLARTLKET DIQPAQAITLVTCPLVVVNPGKDNFVRKGQRKLFEFSLPKQAEIWNVPGKNYLCVFADNN SPVREKLLDFIKNVD >gi|301349816|gb|ADCQ01000034.1| GENE 21 18291 - 19256 364 321 aa, chain + ## HITS:1 COG:BMEI0116 KEGG:ns NR:ns ## COG: BMEI0116 COG0583 # Protein_GI_number: 17986400 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Brucella melitensis # 23 259 3 241 308 76 27.0 6e-14 MSINQKDIFKHFSSSQEVAGEHFFSRSFSVFMKVMEEKKFSAAAVKLQLTQSSISQTIAG LERSLGVDLFNRESRPPQPTKEAVKLYEALKESEKNVSQILVNIQYENLVKPAVRIGMIE SAGKVIAADLCKQMQKTLGLVSLTSEPSGTLMEQLKEGSLDIAVLAGEESHEDINKYFLG EDPWYFIFPKEFTLNQEKLTFEKLKLCGLPFIYHSKETADGGLLNEYFRKHNLYFPKVFE IQSNAFVYDLVGAGLGWSVSHMLGLMSHEKNTLNICPISDDFNPRKIYFCVRKDFDVRIS NLVLDCVRGLIESLRAVKHDQ >gi|301349816|gb|ADCQ01000034.1| GENE 22 19306 - 20265 928 319 aa, chain - ## HITS:1 COG:RSp1578 KEGG:ns NR:ns ## COG: RSp1578 COG0010 # Protein_GI_number: 17549797 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Ralstonia solanacearum # 9 302 8 309 318 168 35.0 1e-41 MPKIIHNLPITGIASFAKYPICTDLDQLDDADVCVMGIPYDMGAPYLSGTKFGPRRIREV SCHYGRGDAGFWDPERMTQYLEAPVKVVDAGDVDMDPMDFHASFDNVTEAARKIISKGAL PVFMGGDHSVTIPTARALDMYSDLCVVQFDAHLDFGKRRWTNGSPMRMISEMPHFTQMCQ IGMRGLGSNTREDFQSAYDYGSVVIPSRKALSLGAEEVIKMIPESKNYFVTIDIDGYDMS TAPGVGSPSPGGLNYNFVTDVLEGIAKKGNVVAFDLVEVAPQYDPSGITARLGAMTMLAF MGFITKEKEKRGQLKAQRR >gi|301349816|gb|ADCQ01000034.1| GENE 23 20459 - 21424 451 321 aa, chain + ## HITS:1 COG:BMEI0116 KEGG:ns NR:ns ## COG: BMEI0116 COG0583 # Protein_GI_number: 17986400 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Brucella melitensis # 12 310 8 308 308 115 27.0 2e-25 MSDLNLINTLQLKIFVTVAEERTLKAAAVKIGQTPSAISQNIKALENFLGVTLFERDSRP ILLTKAGRRLFALARELLQKNDEILEAVRSEKKKYETLRLGLGESAAGSFGPQLIAELNK IITSVDVVSGLTLPLVSALMSEKIDVLLSPYPIKDEEELEREVLFQEDFVLVVKKGHEPI ISEEAFQTLIISRPLIEYNQDSSDRIQADRLLRSLGQKPALHTSVSTSYLVVGLVSQLDG WSLIPPFNLWAAGLSSSEVDFYPIPGRSLTRTYWMVRKQIRNHALSQLVGEITKKVLTER FLVKMERQLPGLSRFIHVPGK >gi|301349816|gb|ADCQ01000034.1| GENE 24 21500 - 22933 1363 477 aa, chain - ## HITS:1 COG:jhp0594 KEGG:ns NR:ns ## COG: jhp0594 COG1027 # Protein_GI_number: 15611661 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori J99 # 3 460 2 460 468 385 44.0 1e-107 MSRIEKDCLGQMEVPDDVYYGIQTLRVMGVSGILGEKVIKYPYLHRALVQMKKAAALANK EIGALDERRAEAIAWACDKVLTGKYDDQFPLDMFQGGGYTCVNMNVNEVIGNLANEHLTG HKGQDEVHPNTHVNMGQSTNDIVTSAEHLCIYPALDKLAPELDKLADAFAKKAIEFADVI KVGRTCLQDAVPLTLGQEFGGYAEFCRRQAENIRSLRAECFYLLVGATAVGTGLGAAPGY QEAFYKHLSVQLGEDVKSTADLFDGMQNDDFCVKVSAAVKQAACGISKIAKDLRIMSSGP RAGFGEITLPSLSPGSSIMPGKINPILPELVSQVAQQTCGNDVVISMAFEQGELEISVWA PTLYKNLFESFDLLTKVIPLFIDKCINGITANRDRCAKEAKETIALSTVVAATLGYPEGV KVAKYAQEHNLAVADAVLEMGIMTKEEADMLLDPALLVNPEKMAEVIARWKGEKQKQ >gi|301349816|gb|ADCQ01000034.1| GENE 25 23126 - 24091 441 321 aa, chain + ## HITS:1 COG:BMEI0116 KEGG:ns NR:ns ## COG: BMEI0116 COG0583 # Protein_GI_number: 17986400 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Brucella melitensis # 6 313 3 308 308 114 24.0 3e-25 MRNFSLELNQLKVFMEVAKDCNMTRAAQKLGLTQPAISTVIKKIENGLGIELFDRASRPM RLTAAGHVLFKRGNGAIELIETILADMYRTANGKNPDIRLGCSEAIMNIFGGELVSLLAS KPGRLTLSSGTSLEVSDKLRNKEIDISLSTDPLTKDDGVQNIQLLEDEFLLVIPKEIHDK IRPKSISDLNEFLEKTPYVRAGKTTMDYFQTERLLRTLNFQKFDSIEIDSCLAMAIVVAE GNGWAILPTFSLLQASYFLPQLSFLSFKGKNAERRFYISYEDTVFEPTAENISSSLKTYL HEKVIPMVRELKPGLEKFIKA >gi|301349816|gb|ADCQ01000034.1| GENE 26 24129 - 25295 640 388 aa, chain - ## HITS:1 COG:TM0111 KEGG:ns NR:ns ## COG: TM0111 COG1454 # Protein_GI_number: 15642886 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Thermotoga maritima # 3 387 5 387 387 260 38.0 3e-69 MFSFCIPTEFVFGTGCFKELHKYNLPGKKALIVITNGKSIRNSGYLAELENQLSLAGKEY EVFDGITPNPTTDSIMDAAKTAKDSACDFIIGFGGGSPMDSAKLIALAATNPGNIWDYCQ KGSGGRKLPANQPLPVVCISTTAGTGSEADNSGMVTNPITHEKLGIGFQSLFPVLSVVDP ELMRSVPPRLTAYQGLDTFFHLAEGYLSKKANYFNEMFSITGIEKIGAYLARAVIEGNDL EARENVAFANTLGGFVMSTGKLLSQHSLEHILSAYHPNLPHGAGLILISRAYFGFFIDKG LCRQKFIDMARALGNKNASEPQDFLSALDKLLEDCGVSNLTMSEFGIKAEELPAMAKEVR ESLAPAFECDPTLLTIEDCAEIYRKSFK >gi|301349816|gb|ADCQ01000034.1| GENE 27 25364 - 26149 620 261 aa, chain - ## HITS:1 COG:MJ0791 KEGG:ns NR:ns ## COG: MJ0791 COG0165 # Protein_GI_number: 15668974 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Methanococcus jannaschii # 1 250 236 477 484 139 33.0 4e-33 MEILSAFGIAASTFTRLCQDLYVWATPDYGYVEVADEVAVCSSIMPQKKNPWTLEHIKGK SANIEGLCVGAWAVMKNTPYTHNNESSGEGPTFLWNAFDEMKACIELLNITFRGIKLNKE LMVQTASNNFCTMAELANTLVRADHISFRTAHDIVAHVVDFMLTHGKKASEIDVDVIAPI AKQLFNIETKVTNEEIQLGLDPVKNANSKDSLGGSAPEEVLRQLDELMARLEENISVVTQ RRAQLEGAKQKTEAKIQALLA >gi|301349816|gb|ADCQ01000034.1| GENE 28 26283 - 26451 169 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 56 1 56 190 113 100.0 4e-24 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRF Prediction of potential genes in microbial genomes Time: Fri May 13 06:12:00 2011 Seq name: gi|301349815|gb|ADCQ01000035.1| Burkholderiales bacterium 1_1_47 cont1.35, whole genome shotgun sequence Length of sequence - 35038 bp Number of predicted genes - 34, with homology - 32 Number of transcription units - 24, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 2 Tu 1 . + CDS 339 - 488 65 ## + Term 521 - 568 -0.5 - TRNA 367 - 443 94.5 # Asp GTC 0 0 - TRNA 445 - 520 87.5 # Val TAC 0 0 - Term 322 - 358 5.5 3 3 Tu 1 . - CDS 560 - 832 243 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 873 - 932 4.9 - Term 1131 - 1162 1.6 4 4 Op 1 18/0.000 - CDS 1181 - 3601 2329 ## COG0466 ATP-dependent Lon protease, bacterial type - Prom 3673 - 3732 7.3 - Term 3797 - 3830 2.1 5 4 Op 2 24/0.000 - CDS 3840 - 5165 244 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 6 4 Op 3 29/0.000 - CDS 5198 - 5827 658 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Term 5853 - 5892 6.1 7 4 Op 4 . - CDS 5945 - 7330 1990 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 7457 - 7516 8.8 + Prom 7728 - 7787 7.2 8 5 Tu 1 . + CDS 7846 - 7980 134 ## + Term 8010 - 8053 10.2 + TRNA 8100 - 8176 78.3 # Gln CTG 0 0 + TRNA 8198 - 8274 78.3 # Gln CTG 0 0 + Prom 8200 - 8259 79.0 9 6 Tu 1 . + CDS 8305 - 8481 90 ## gi|302859751|gb|EFL82829.1| putative membrane protein - Term 8518 - 8576 9.4 10 7 Op 1 . - CDS 8595 - 9281 775 ## COG0775 Nucleoside phosphorylase 11 7 Op 2 . - CDS 9300 - 9863 621 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 9982 - 10041 4.4 + Prom 9935 - 9994 5.4 12 8 Op 1 . + CDS 10193 - 11272 1361 ## COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component 13 8 Op 2 . + CDS 11353 - 11823 524 ## Amico_1587 tripartite ATP-independent periplasmic transporter DctQ component 14 8 Op 3 . + CDS 11833 - 13128 722 ## PROTEIN SUPPORTED gi|90020581|ref|YP_526408.1| ribosomal protein L16 + Term 13140 - 13176 6.5 15 9 Tu 1 . - CDS 13178 - 13606 281 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 13631 - 13690 5.5 + Prom 13725 - 13784 4.9 16 10 Tu 1 . + CDS 13897 - 15510 1563 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) + Term 15521 - 15565 8.2 - Term 15515 - 15545 1.0 17 11 Tu 1 . - CDS 15555 - 16466 725 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 16488 - 16547 3.8 18 12 Op 1 4/0.000 - CDS 16587 - 17780 976 ## COG1171 Threonine dehydratase 19 12 Op 2 . - CDS 17782 - 18945 1145 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 18977 - 19036 2.6 20 13 Tu 1 . - CDS 19045 - 19977 219 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 20094 - 20128 5.2 21 14 Tu 1 . - CDS 20159 - 20374 275 ## gi|302859763|gb|EFL82841.1| hypothetical protein HMPREF0189_02142 - Prom 20453 - 20512 3.4 + Prom 20396 - 20455 4.2 22 15 Tu 1 . + CDS 20594 - 21169 443 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 21201 - 21251 11.1 + Prom 21196 - 21255 2.2 23 16 Tu 1 . + CDS 21287 - 22069 591 ## BT_2572 putative potassium channel subunit + Prom 22089 - 22148 3.4 24 17 Tu 1 . + CDS 22170 - 22577 367 ## Xaut_3311 molybdenum cofactor biosynthesis protein + Term 22602 - 22633 4.8 25 18 Tu 1 . - CDS 22632 - 23549 945 ## COG0039 Malate/lactate dehydrogenases - Prom 23606 - 23665 1.9 + TRNA 23919 - 24002 73.7 # Leu TAG 0 0 + Prom 23928 - 23987 80.4 26 19 Op 1 . + CDS 24236 - 25399 1397 ## COG1017 Hemoglobin-like flavoprotein + Term 25456 - 25494 6.2 + Prom 25714 - 25773 4.2 27 19 Op 2 . + CDS 25889 - 26173 283 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 26327 - 26364 7.1 - Term 26309 - 26358 9.6 28 20 Tu 1 . - CDS 26384 - 27034 793 ## gi|302859770|gb|EFL82848.1| conserved hypothetical protein - Prom 27220 - 27279 4.0 + Prom 27160 - 27219 6.9 29 21 Tu 1 . + CDS 27256 - 28815 1037 ## COG0582 Integrase 30 22 Op 1 22/0.000 - CDS 28812 - 29855 904 ## COG0470 ATPase involved in DNA replication 31 22 Op 2 10/0.000 - CDS 29846 - 30454 486 ## COG0125 Thymidylate kinase 32 22 Op 3 . - CDS 30455 - 31474 896 ## COG1559 Predicted periplasmic solute-binding protein - Prom 31570 - 31629 3.2 + Prom 31457 - 31516 5.1 33 23 Tu 1 . + CDS 31614 - 32528 1156 ## COG0354 Predicted aminomethyltransferase related to GcvT + Term 32551 - 32586 3.3 + Prom 32552 - 32611 3.4 34 24 Tu 1 . + CDS 32665 - 34350 934 ## COG0827 Adenine-specific DNA methylase Predicted protein(s) >gi|301349815|gb|ADCQ01000035.1| GENE 1 3 - 251 353 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 82 514 595 595 155 92.0 7e-37 RENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGP ETPEEVPEEPEIEPLLGTDIEI >gi|301349815|gb|ADCQ01000035.1| GENE 2 339 - 488 65 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKEPHRAGILAEWTGLEPATPGVTGRYSNQLNYHSLVDAESLELPTYAL >gi|301349815|gb|ADCQ01000035.1| GENE 3 560 - 832 243 90 aa, chain - ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 90 1 90 90 92 61.0 1e-19 MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG RNLRTNKSIDIPARKVPKFVAGKNLKDVVE >gi|301349815|gb|ADCQ01000035.1| GENE 4 1181 - 3601 2329 806 aa, chain - ## HITS:1 COG:RSc1713 KEGG:ns NR:ns ## COG: RSc1713 COG0466 # Protein_GI_number: 17546432 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Ralstonia solanacearum # 13 774 14 776 806 944 65.0 0 MIQKRTTNSNPMMSVLPLRDIVVFPQMVVPLFVGREKSLSALRNVTSSEKANKELLLVAQ RDAGIEDPSSDDLFDVGTVARIVQSLKLPDGTFKVLVEGIRRVRVTQYKEDEQIFAEVED IPQDRISQRTFEPLRRTILTAFTEYQKNNKRITNDQLNRISSLTDPEQLITSIAQLLVLS PSRKQDLLATVGTKERLELLFDMLEEEVDIQQTEKRIRGRVKKAMEKNQRDYYLNEQVKA IQKELGDTDEEFEEIERKIKAAKMSPEGEEKALGELKKLRMQGQNSAEANVIRNYIDTLI SLPWSKRTRVNTNLIKADAVLEEDHYGLEKVKERILEYLAVQSRVKNVKSPILCLVGPPG VGKTSLGQSIARATGRKFVRLALGGVRDESEIRGHRRTYIGSMPGRILQSLTKAETNNPL FLLDEVDKMGMDYRGDPAAALLEVLDPEQNNTFQDHYVEVDFDLSHVMFIATSNSMNIPA PLLDRMEVIHLSGYTEDEKLHIAQRHLIPKQMKLNGVKPGELEIEDSAIVDIVRYYTREA GVRSLEREINKICRKTVRDILLKKTKGKVVANSDNLDYFLGVRRYNFGVMHKGDQVGQVT GLAWTEVGGDLLTIEVATMPGKGQITRTGSLGDVMKESVEAARTVVRSRASRLGITYKQI SETDIHVHFPEGAVPKDGPSAGSAITLGLVSALTGIPVKAEVAMTGEITLRGEVLPIGGL KEKLLAALRGGIKEVLIPEENVKDLEEVPENVKEGLVIRPVRTIDEVFQYGLSKQPEALP QTIEQPITAKQQIEVGTSATGSTARN >gi|301349815|gb|ADCQ01000035.1| GENE 5 3840 - 5165 244 441 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 207 414 272 432 466 98 34 5e-20 MSDNKEGPVCSFCGAKKGQYSEIYKSNIGDQYICKECTEELARYSGVIEEALKRYQYLEA HNKNAGSEAPAKEAEAEEAEKQDPILYGELPTPKEIYANLDQYVIGQEQAKKVLSVAVYN HYKRLRSKFIGDDSDEKVEIQKSNILLIGPTGSGKTLLAQSLAKMLNVPFAIADATTLTE AGYVGEDVENVILKLLQSCNMDLKRAQMGIIYLDEIDKIARKSENPSITRDVSGEGVQQA LLKLVEGTVANVPAAGGRKHPQGNNIPVDTSNILFICGGAFEGLDKIIRRRTERSGIGFE ADVKGADDRSEGEVLRDIEAKDLVRYGLIPELVGRLPVIATLDDLDEEALIRILTEPKNA VLKQYARLFELEGVVLEVEPDALKEAAKMAQERKTGARGLRSIIENALLSAMFEIPSRKD VARVVVKASTMRDGQAEFITK >gi|301349815|gb|ADCQ01000035.1| GENE 6 5198 - 5827 658 209 aa, chain - ## HITS:1 COG:RSc1711 KEGG:ns NR:ns ## COG: RSc1711 COG0740 # Protein_GI_number: 17546430 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Ralstonia solanacearum # 10 201 24 215 217 304 78.0 1e-82 MPDFSNFNSALIPMVIEQSGRGERSFDIYSRLLRDRVVFLVGPVTDQSANLVVAQLLFLE SENPDKDISLYIDSPGGSVYAGLSIYDTMQFIKPDVSTICLGMAASMGAFLLAAGAKGKR FALPNSRIMIHQPSGGTNGTAADIEIQAKEILELRSRLNTILSEHTGQSIEKIAVDTERD NFMSSAQAVEYGIIDGVFRKRSEQIIRKK >gi|301349815|gb|ADCQ01000035.1| GENE 7 5945 - 7330 1990 461 aa, chain - ## HITS:1 COG:RSc1710 KEGG:ns NR:ns ## COG: RSc1710 COG0544 # Protein_GI_number: 17546429 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Ralstonia solanacearum # 35 454 11 441 449 302 41.0 8e-82 MAEETKVEEKVEEKTEATAAPAEETKAEEVKPNPLQRTIELTISRKELDARVAKALREKA KKAKFHGFRPGHAPAAMVRAAYGQEIQFDAINTLVSAAFVEKVQEGKYHVSGYPDIAPTE GAPENEDTMSFTATFEVFPDVEVPDMKDASVTEYECELTDADVEKTLDVMRKQRATFEKA DKTAADGDRVIVDFKGTLDGVAFEGGTAKDYAFALGQGRMLPEFENAIRGMKAGETKTFN LTFPENYPAKNLAGKEVQFEVTLKEVDEEILPALDDKFAKDLGVNDGIDKLKADVKENLQ REVTARLEARTKQSAMNALLSVAKFPVPHAAVEEQREALVHDAIENMKAQGINLPNDSIP ANAMLDQAEQRVRLGLQISAIVEKEKITSTDEQIKALADNIAKSYEDPKEVVDWYLNNPQ HKAELAAVVVENNVVAWILKNAQVKKEPISFENLMGRGQQA >gi|301349815|gb|ADCQ01000035.1| GENE 8 7846 - 7980 134 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYRDSAKARVAARDLRRQQVKLFKLGATITLCAFLISQLSDMIF >gi|301349815|gb|ADCQ01000035.1| GENE 9 8305 - 8481 90 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859751|gb|EFL82829.1| ## NR: gi|302859751|gb|EFL82829.1| putative membrane protein [Burkholderiales bacterium 1_1_47] # 1 58 1 58 58 89 100.0 5e-17 MEAAAYTYLIPVICLICSYFILGEKLTVWSASGAFLVLFGLVLSQLDSSVLKKKFLKA >gi|301349815|gb|ADCQ01000035.1| GENE 10 8595 - 9281 775 228 aa, chain - ## HITS:1 COG:FN1015 KEGG:ns NR:ns ## COG: FN1015 COG0775 # Protein_GI_number: 19704350 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Fusobacterium nucleatum # 2 225 7 233 237 152 40.0 6e-37 MIGIIGAMKVELEALKARLQDVTVTRISGVDFYSGKLHGTDVVAAVSGVGKVFSAVCAQT MVLKFGVKAIINTGVAGGLSPNLKLGEVAIASQVCQHDMDTSGVGDPKGLISGINKVFID ADPLWVAKAEKAAQKLGIHTETGVIASGDQFVCDTDRKAWIRDFFRAEAVEMEGAAIGQV CFVNEIPFVVIRSISDDASGHAPVSYESFFKEAAQRAVALTEEMLKEA >gi|301349815|gb|ADCQ01000035.1| GENE 11 9300 - 9863 621 187 aa, chain - ## HITS:1 COG:FN2073 KEGG:ns NR:ns ## COG: FN2073 COG0503 # Protein_GI_number: 19705363 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Fusobacterium nucleatum # 1 177 1 177 177 164 49.0 1e-40 MRYYDIEVAGTKRALKLCPINQDLCIAAFLILGDTELTVNCAAALLERAPKYDFLLTAEA KSIPLVQEMARQNGDAHYIVARKGRKLYMDNPICVGVKSITTEKDQKLYVDQEEMEQMRG KRILIVDDVISTGRSLQALEEIAAAAGADVVGKMAVLAEGDAASRTDISYLEKLPLFNGK GEPLPFD >gi|301349815|gb|ADCQ01000035.1| GENE 12 10193 - 11272 1361 359 aa, chain + ## HITS:1 COG:SMb20036 KEGG:ns NR:ns ## COG: SMb20036 COG1638 # Protein_GI_number: 16263787 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, periplasmic component # Organism: Sinorhizobium meliloti # 3 359 2 336 338 130 26.0 3e-30 MTFKLLSKAALALAAMGLCLSAASAAYKSEYKLSVVPGASSGWGQTATFFADCVRQKSNG RINIKPYFGAQLMAGKQTSELLLVRRGAIDFALASTINWSPQIKELNLTALPFFVANNPD RYKAIDAIEAGKSGKMLEKAIEKTGVKFLGWSENGFRELTTSKGPIEKPEDMKGMKLRVC GTPIFIDIFSSLGANPQAINWSEAVTGFQQGIVDGQENPTNGINVPTKVWQWHKYSTDWH YMIDPLFFTANMKVWKEFSPEDQKLILSCATEAEKYGKALSRLSNDNGQAYEYLKSINKL PAVTNPKEELKKNGMTVTEYTPEMIKRFYEATAGVRADWTQKIGPNVVKAAEEDMQAAK >gi|301349815|gb|ADCQ01000035.1| GENE 13 11353 - 11823 524 156 aa, chain + ## HITS:1 COG:no KEGG:Amico_1587 NR:ns ## KEGG: Amico_1587 # Name: not_defined # Def: tripartite ATP-independent periplasmic transporter DctQ component # Organism: A.colombiense # Pathway: not_defined # 1 156 1 156 156 132 47.0 5e-30 MLHFLNTRFEELLGSFLLAVMACIAFINIIIRYCTNLSFSASEELTVNFFVWIVLLGTSI AFRESSNFTMNLLYSITHGWLRKTLYFFGVICSLAFFVMLVYLGAIEVIDEIELNVSSES LDIPVWLYTIATPLFSALIIVRILQRTVEDIQKQNF >gi|301349815|gb|ADCQ01000035.1| GENE 14 11833 - 13128 722 431 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020581|ref|YP_526408.1| ribosomal protein L16 [Saccharophagus degradans 2-40] # 11 431 6 431 435 282 37 2e-75 MLNSLMSDPGLVLLILFIFMLVCRVPIAISLGLSAAIVSWLFDMGIDMLPYNFFAGVAKV PLLAIPFFILAGFIMESAGIAARIVRLVENLVGDMTGGLAIATVAVATFWGAVSGSGPAT VAALGLILIPAMVKNGYDKAFAAANVSVTSGLAIVIPPSIAFIVYGGIADASVPALFAAG IVPGLLVAGFLMLTVYLISKKRGYRGLPRQESTWLVFKDAIWGVMTPVVILGGIYGGIFT PTEAAAVAIFYGLFVGTFIYKAFNSWDKLLHVLFESVKATAVIMFVVTCAGLFAWVASTV GLVERGAAVLLALSDNPWALLFLINVILLAAGMIMDAISIYYVLLPFLLPIVHHFGWDPV WFGVMMTVNLAVGQVTPPVAVNLYVGAQIADLTMEEMTPPVIPLLIATLVALAVIVLFPS LSTFLPTLWGL >gi|301349815|gb|ADCQ01000035.1| GENE 15 13178 - 13606 281 142 aa, chain - ## HITS:1 COG:HI1161 KEGG:ns NR:ns ## COG: HI1161 COG2050 # Protein_GI_number: 16273085 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Haemophilus influenzae # 12 130 17 132 138 90 40.0 6e-19 MDKKYAAQEAITHSMMGSLGLKLIEEKEGFIRASMPVNDNTSQPFGVLCGGASLAFAEII AGYGSYLCCPEGFIPVGSSVSGNHVSSVRKAPDVLVYAEATALHLGRTTHLWNVDIKTEN GRLVSTVRVTNFIVKDKSESWK >gi|301349815|gb|ADCQ01000035.1| GENE 16 13897 - 15510 1563 537 aa, chain + ## HITS:1 COG:VC2738 KEGG:ns NR:ns ## COG: VC2738 COG1866 # Protein_GI_number: 15642731 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Vibrio cholerae # 3 537 12 542 542 712 64.0 0 MTLDLAKYGITDVKEVVHNPSYEQLHKDETAEGLVGYEKGVVTELGAINVMTGIYTGRSP KDKFFVVDDVSKDTVWWTSEEYKNDNKPLSEASWKILKDKAIDELSHKDRLYVVDAFCGA NKNTRLKVRFVMEVAWQAHFVTNMFIRPTPEELKDFGEPDFIVLTASKAKVENFKELGLH SETAIVFNLKEKMQVILNTWYGGEMKKGMFSVMNYLNPLRHIASMHCSANTDLEGKNTAI FFGLSGTGKTTLSTDPKRLLIGDDEHGWDDEGVFNYEGGCYAKVINLDKDSEPDIYNAIR KDALLENIIVNEAGKVDFSDTSATENTRVSYPIYHIENIVKPISKGPAAKEIIFLSADAY GVLPPVSILSPDQAMYYFLSGYTSKLAGTERGITEPQPTFSACFGAAFLSLHPFKYAKEL ARKARTNGARVYLVNTGWNGTGKRISIKDTRAIIDDILSGSILKGATKKIPYFDLEIPIN AEGAHAEILNPRNTYKDPSEWDRRAEALAAKFIENFKKFSATNEECKRLEKFGPHLD >gi|301349815|gb|ADCQ01000035.1| GENE 17 15555 - 16466 725 303 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 8 298 14 305 306 161 34.0 1e-39 MSDSSFSKGIGLAIAASVFWGSMGVCAQYLLQQCSFTPLDLVSMRLVLAGLILLIMERLV FGRNIISPLKDIRTTVGILVAGLLILVSQLTFMLAVAASNAGTAAIVLTLVPLICAFWLS ITEKRPLTMREGICFVLAASGVFLIVTKGNFSTLDLSFAGVLWGFVSAIFSAAYSIQPRK LIMKVGVGPVVGFGMLFGGLVASVMNPPWTMNVQWTAMSVSAFTYVVLVGTVAAFWCYLS SLKYVSAVIVGLMVCFEPLSAYLLSVFAFDLRIGMWEGAGICLVLLNVLVLSLPKKSSEA IKP >gi|301349815|gb|ADCQ01000035.1| GENE 18 16587 - 17780 976 397 aa, chain - ## HITS:1 COG:ECs3744 KEGG:ns NR:ns ## COG: ECs3744 COG1171 # Protein_GI_number: 15832998 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 13 394 18 395 398 347 47.0 3e-95 MKDLDHLKLPRAGETSSRFTKEQALAAQKFHQTLPGYSVTRLVELPALAKELGVKDIFVK DEASRFGLNSFKGLGGSYCLFHLLSEKYGWSGKVESFAQLKDQIASLEEKPKIISATDGN HGRGLAWICHLLGLRCEILMPAGSSEERQENIRKLGADCRRTDGNYDETVHEAERFALEN DWLLVQDTALPGFEKVAQFIMHGYLTMALETVEQLKGKCPTHIFLQAGVGSMAGAMCGFF ASLYGPDVPVISIVEPKTADCVYRTAEKDDGKLHNAPGSLETIMAGLSCGEPCSVGWKEI RAAASHYFRIEESVAADGVRVLSSPLENDPRVLSGESGAAGFGTAFELLFHKAQYQEEIS SLGLNSESVLLFFNTEGVTDRKNFLKIVWEGAFAEKV >gi|301349815|gb|ADCQ01000035.1| GENE 19 17782 - 18945 1145 387 aa, chain - ## HITS:1 COG:ECs3745 KEGG:ns NR:ns ## COG: ECs3745 COG0624 # Protein_GI_number: 15832999 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli O157:H7 # 10 380 18 392 403 250 39.0 3e-66 MKHSVPAQTENDLIDFYRNAIRTRSYSNQEGDIAVLILKEMEKLGYDECYIDRVGNVVGR VGSGKKIIHFDSHMDTVNAGDPALWDHPPFSADYADEYIYGRGSVDMKGGLSASVYAAAE AKKQGLLDGKTVYVTTTVCEEDCDGVNLINFYKDSGIKPNFVFICEPSYNVITLGHNGKM QVRIRTQGISAHGSAPEKGVNAVYEMAEIITRVDELNKRLQKTEGKGTVVLSKISSVAAS LNAVPSECEIYLDRRLRLGETIEDVKKEMDALVEGKPAKWELGVLKETSWKGEELVYLPE HDPWKIAEDAELTKACIRAYEDVFGEKPKKFEFWDFGTNAVVPVSMGIPTIGFGPGEYKL AHMINERCRPEQVKEAANFYLNTIAEL >gi|301349815|gb|ADCQ01000035.1| GENE 20 19045 - 19977 219 310 aa, chain - ## HITS:1 COG:BS_ydeC KEGG:ns NR:ns ## COG: BS_ydeC COG2207 # Protein_GI_number: 16077582 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus subtilis # 16 308 5 288 291 135 29.0 1e-31 MQTARFHPHMAGHQIVLKSNLEETTQHGSEGFPAALYETVFRSKMLRYVPLHWHKELQLC LILTGRVRFSINQKEVEAGAGDVIFINSQVIHSATSISNDEEEASYCCINFAYEMVGGFH GSLMERNFVLPFLRNEQNDFLLISEKSEEGLLEEISSKMLHIRKLFKETEPERYFDIFAE LVLIWKELVRWLHKTEDQPSTRRPEDYETSRKVISYIEKNLGEKLTLDLIAKEVCLSKWE CSRRFKRIAGESVWSYLISARMAKAVELLLYSRKSVERIGFEVGFPNVNLFIRQFKKEFR TTPGQFRKNH >gi|301349815|gb|ADCQ01000035.1| GENE 21 20159 - 20374 275 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859763|gb|EFL82841.1| ## NR: gi|302859763|gb|EFL82841.1| hypothetical protein HMPREF0189_02142 [Burkholderiales bacterium 1_1_47] # 1 71 1 71 71 95 100.0 1e-18 MVLRTTQKFVNWVSCLYFLGALAMFIFLWAYIPVLHLIWTNLLDFAFNIMYVVIGALLWP GTLLAILVCGF >gi|301349815|gb|ADCQ01000035.1| GENE 22 20594 - 21169 443 191 aa, chain + ## HITS:1 COG:RSc2047 KEGG:ns NR:ns ## COG: RSc2047 COG0494 # Protein_GI_number: 17546766 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Ralstonia solanacearum # 11 184 23 196 205 168 47.0 5e-42 MQQKDPGKDPLAEKLLESGIAYKGSFLQLHRDTVKTPDGVVTTREYLHHPGASMIIPMLE DGSVILERQYRHPLRRNFLEFPAGKLNPGESPYNCAKRELIEETGYEAQFWKKLGRFNNA IGYSDEEITVFYASDLKYVGQNLDAGEVLDVITLPFPEVLRQCLSGEITDVKTIVGAFWL ENFLKTQKKSE >gi|301349815|gb|ADCQ01000035.1| GENE 23 21287 - 22069 591 260 aa, chain + ## HITS:1 COG:no KEGG:BT_2572 NR:ns ## KEGG: BT_2572 # Name: not_defined # Def: putative potassium channel subunit # Organism: B.thetaiotaomicron # Pathway: not_defined # 11 222 12 222 243 186 46.0 1e-45 MSKSTWERIKEQGIQGILRLIVLLCSLALVGCISYDTFVYNNPFYQSQFAMKLQFWVCIF FMADLALEFIYSKRKTRYIITYFLLFIACIPYGTILPKLGITLPRDIGYFVSFMPLIRSC YALAIVVSWFAVQTSSKMFLTYVIILFSGLYLGSLGFYVCETNVNPDVRTYWDALWWAVM EAITIGCNIEAVTTGGKILSVIVGVLGLLIIPMFTVYVNNIVSVFHTVTTAAAEAAEEIP EKTDENGKKNLSEAKTMKKQ >gi|301349815|gb|ADCQ01000035.1| GENE 24 22170 - 22577 367 135 aa, chain + ## HITS:1 COG:no KEGG:Xaut_3311 NR:ns ## KEGG: Xaut_3311 # Name: not_defined # Def: molybdenum cofactor biosynthesis protein # Organism: X.autotrophicus # Pathway: not_defined # 1 135 1 135 135 132 54.0 3e-30 MAYKIIDIQGIGEAYAPKLIAIGIKTPDELLEACLTPAARKKVADKTGISGKLILKWANH ADLFRISGIGPQYAELLEAAGVDTVKELRHRVPANLTAKMVEINKAKNLAQRDPSEKEVT KWIEEAGKLEAKMTY >gi|301349815|gb|ADCQ01000035.1| GENE 25 22632 - 23549 945 305 aa, chain - ## HITS:1 COG:lin1775 KEGG:ns NR:ns ## COG: lin1775 COG0039 # Protein_GI_number: 16800843 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Listeria innocua # 2 296 3 295 302 256 45.0 5e-68 MRKVGVIGLGHVGSTVAYTLVTKGIADELVLIDTNEAKCTAEFYDLLDSLGRLDTYTKLS MNDYKALQDADVVITAFGDIKALADGGNRFLEYSFNCQQAKQVGTALKEAGFHGVLINIS NPCDVITGLLQHYTGLSRQQVFGTGTFLDTARMQRAVSMSLDQNPHNIAGYVLGEHGESQ FAAWSTITVQGEPITEIAKDQHLELSELDKAARGGGWLVFNGKKYTCYAIATCAAKLLQA VFSDAKLACPASVYLEDYGCYVGYPAVIGKNGVEYVHRLELTEEEKKLLDKSALMIAQKT KEGLL >gi|301349815|gb|ADCQ01000035.1| GENE 26 24236 - 25399 1397 387 aa, chain + ## HITS:1 COG:SMa1191_1 KEGG:ns NR:ns ## COG: SMa1191_1 COG1017 # Protein_GI_number: 16263102 # Func_class: C Energy production and conversion # Function: Hemoglobin-like flavoprotein # Organism: Sinorhizobium meliloti # 1 151 1 151 151 174 56.0 4e-43 MLTKEQIELVKTTVPVLREHGVALISHFYKRMLSHNPELMQVFNMGHQRAGFQQQALAGS VLAYAENIENLKPLLGAVAHIANKHVSVGIRAEHYPIVGKHLIASIKDVLGEAATPELID AWTAAYTRLADILIGAEKNIYDKNAVVEGGWTGWRFFKVAEKSKQTNDITSFKLVPVDHG KMPDVKAGQYISVRVFVKGQELIQPRQYTVVKADAASFTIAVKKVEAAEKSPAGMVSNTL HNDIQEGDLVEVSFPVGEFNLPEGDGSLCLLSAGIGITPLFAMLKEAVKKDPTRKISFVH VCKSKEAVPFSDEIDLLVKEGTVTFEVFETSAHGRPSEEFFKHLADKDTNFCVCGPVPFM KLAAAELVKNGVPAEKIHAEKFGTGAI >gi|301349815|gb|ADCQ01000035.1| GENE 27 25889 - 26173 283 94 aa, chain + ## HITS:1 COG:STM0451 KEGG:ns NR:ns ## COG: STM0451 COG0776 # Protein_GI_number: 16763832 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Salmonella typhimurium LT2 # 1 90 1 90 90 72 44.0 2e-13 MNKQQLIEIIAEENEITKDMATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARVI CNPHTGEKLELKPRSVPKFVPGTLFKQIVDEQNS >gi|301349815|gb|ADCQ01000035.1| GENE 28 26384 - 27034 793 216 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859770|gb|EFL82848.1| ## NR: gi|302859770|gb|EFL82848.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 216 1 216 216 334 100.0 2e-90 MNTKKIFSSAALAASLTLAAGAAFAWGCGAGSMMGYGPGCQVDPQGAYPGCQYGPNGMMR QGYPCWSYGPQGAQGARDFRPGFEQRKVYLRGALNLTDAQKPAFEAYFGAVDAYHQMKRP QGVQGQTRQDILNQRLAFQKTRVEALQKAIDARQELMKVLTPEQVKVFDAVESRTHARGP RGGFGPGHRGYHHGGYGMMYQQGVPAPQGQQQGGRL >gi|301349815|gb|ADCQ01000035.1| GENE 29 27256 - 28815 1037 519 aa, chain + ## HITS:1 COG:RSp0902 KEGG:ns NR:ns ## COG: RSp0902 COG0582 # Protein_GI_number: 17549123 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Ralstonia solanacearum # 125 509 190 554 566 148 30.0 2e-35 MASDFDFDLPLNQYFLSEVAEHLESKGINCLDDLIDAMYGDPERWATRLDLSKERSNGIL SWLYSKKLGGAPIDFPPVLETRARDLSKSYYGQKVEDIGAPLWSEINKKQKTGRRLGQPL KNSEIRPLEFLTPPKALDGSSGTNRGDRQDCALNVNTDIEAIRLWLKAKGTNANTQAAYR REAERFLLWCLLEKRVALSSARLEECSEYLKWLEMIGRETPENWQKSWIYPQETWIGPKN TPRESPDWKPFNSSLAYTSRKAASTIVRQLFSFLHKTGYLKFNPFDQIPAKVRFLPGEGK PKEFADRSLSPAQWEEIETHLAQLPLDLVRMRLEVLFVLGKELGMRASEMINARCGWIEY SRFGDEETVVIDIVGKGDKQRRLPLSSEQVDKISRYLAARKRPPLFEPAGKDVPLIASFR IGNKGADKEGLSRSGLYIVLHTFLEEVANDVRKKNPRDAAKLLGSSLHWLRHTFAVASLE VMPVNVVQTAMGHASVNTTTRYISPDQTEVLEGFKKLKS >gi|301349815|gb|ADCQ01000035.1| GENE 30 28812 - 29855 904 347 aa, chain - ## HITS:1 COG:RSc1785 KEGG:ns NR:ns ## COG: RSc1785 COG0470 # Protein_GI_number: 17546504 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Ralstonia solanacearum # 6 344 4 336 336 190 36.0 3e-48 MGLAPYPWLERPAEVLAKMLNKLPGGILIYGPRGCGVFELASRFAAAVVCQHPVDGAPCG ICEECKLIFSGNHPDLRYVLSETEAALHPEPWNGKFGEIPKGKSLSKQILIEQVRGIGEY LSVTAHRAGHRAVVIYPADSMSGDQSSALLKTLEEPPEGAVLILVADDINSILPTIRSRC QLVRCTPPTREQGIAYLKSQKVRNPEGELTRLSGRPLLIHEADPNLTLDKKDEAKYLEML ALGSALSSVQVLSAFQKDIPVGPVVSIMQRWYWDLMAVLSGAEPRYFPEHFEAYKRQVHG TDFQKLVPFNQTLMQANRSKDHPLSKRLVLQDLFITWAKTLADARKN >gi|301349815|gb|ADCQ01000035.1| GENE 31 29846 - 30454 486 202 aa, chain - ## HITS:1 COG:PA2962 KEGG:ns NR:ns ## COG: PA2962 COG0125 # Protein_GI_number: 15598158 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Pseudomonas aeruginosa # 5 192 3 195 210 179 54.0 2e-45 MTKRGKFITVEGVDGAGKSTQFEVIANALKERGIDFVRTREPGGPQSAEKIRELLLNEPM TAKCELLVMFAARQENLTKIIRPALEAGKWVLCDRFTDASVAYQGYGRGRSLEEIEMLAN FVHPDIKPDKTVIFDLPTEVAAARLSRKLDRFEQEDADFHRRVRQGYLEIAKREPERCVV IDAQGTPEEVSARVLKEVETWV >gi|301349815|gb|ADCQ01000035.1| GENE 32 30455 - 31474 896 339 aa, chain - ## HITS:1 COG:RSc1783 KEGG:ns NR:ns ## COG: RSc1783 COG1559 # Protein_GI_number: 17546502 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Ralstonia solanacearum # 23 337 66 376 377 246 43.0 4e-65 MKFVVKLLAACGLIALLAFGLLGGAYYYVNVRPVPFEGNPPEVVIKVDKGSTIRSIANSL KQAGADVDPSILTRAFSFYDQDKSVHVGYYRIPNPSTIREIIDKFASGDVIMSKFTLVEG TETAKFLTRIKNSEDLDHADPELDLKTVMSVVHAPEGTHPEGQFATDTFVFAKGSPDTLV LRRAYREQQERIKKAWETRSLNVAVKSPYELLILASIIEKETGQNSDRALVSSVFNNRLK RGMLLQTDPTVTYGIENFNGKITKEHLRTDHPYNTYTRPGLPPTPICNPGLAAIEAAAHP ADTDYLYFVAMGKSGQTKFSKTLKEHNAAVQKYLRSQGL >gi|301349815|gb|ADCQ01000035.1| GENE 33 31614 - 32528 1156 304 aa, chain + ## HITS:1 COG:RSc1782 KEGG:ns NR:ns ## COG: RSc1782 COG0354 # Protein_GI_number: 17546501 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Ralstonia solanacearum # 20 302 39 345 346 95 31.0 8e-20 MSMLELNSWTFSEEQDFVFVVVRGEDAENFLQGMLTQNVKTMGPTDARWTAACNHQGRTA ATSLIVRIPNGFGMLMPKSIAQDEVDRLSKFILRSKVEIEILPEPITYFCSDDAKAIDRP CPALPREPMQAYVGDSVIVVRLPSNDAQGMHGKFVAIGKIPDDMYAPIKAHNRLARSLME EGIALIEKPEVLEWLPQALNMDLIGGIAFNKGCYTGQEIISKTENLGKVKRRMFLGVARG VKDLDEGTEVFMENEPMGRVIQSDGEHFLFVLTYEYMDSELYVKDVPVEILPLPYEVTVP ASVI >gi|301349815|gb|ADCQ01000035.1| GENE 34 32665 - 34350 934 561 aa, chain + ## HITS:1 COG:jhp0430 KEGG:ns NR:ns ## COG: jhp0430 COG0827 # Protein_GI_number: 15611497 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Helicobacter pylori J99 # 64 507 32 501 545 159 28.0 1e-38 MFYGEEMPISKSTERIWKRLNRDLTGKPSYRANKTGSSRRFIPKERCTNPDTLSFITELL PSEDKVPLRNTIYTLSCVLLDRSDCDRKLAEKFKTEYGRTHNFVHKFAQVVLPEEFDLLG TVYQSFLTEGVKNSTGSYYTERSVAQELLDSLEAKPGASFLDPCCGSGTFLILAQEMGLK ICGMDSDPIAVMIAKANLILSGAKEYPDVRVIDFVNRWKSERRRFDFAATNPPWSSKTKN VYADVSSFFFMKTLSLLKSGGKLAFLMPISMLNIASHRLFREHLFSDCRLLEIRKFDTKF SGVQTDFVSILAEKAKPAERFRMNESGEIREIPLSIFQLTEQKTIFSATEPEVEIICKIL SKGEISLADSKWALGVVTGNNKKHLKTKPGLGLEPIYTGKEIQPFCIDKPRYFVHYDRTV FQQTAPDEYYRTTPKIVYRFISNHLVFAAERNGALVLNSANILIPNVPELSFEALLALLN SKVYSFIYRVLFGQIKVLRSNLSQLKLPSINPQQDDELKSLVLAAEANSTEEIKEEINRA IFKLYGLDDEEIAVIRKRLEA Prediction of potential genes in microbial genomes Time: Fri May 13 06:13:19 2011 Seq name: gi|301349814|gb|ADCQ01000036.1| Burkholderiales bacterium 1_1_47 cont1.36, whole genome shotgun sequence Length of sequence - 47918 bp Number of predicted genes - 38, with homology - 36 Number of transcription units - 25, operones - 7 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 408 314 ## Pmob_1061 HNH endonuclease - Term 348 - 380 3.0 2 2 Tu 1 . - CDS 543 - 4628 2608 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 4650 - 4709 1.7 - Term 4688 - 4731 3.6 3 3 Op 1 . - CDS 4748 - 4999 232 ## gi|302859779|gb|EFL82857.1| putative transcriptional regulator 4 3 Op 2 22/0.000 - CDS 4996 - 7323 2690 ## COG0370 Fe2+ transport system protein B 5 3 Op 3 . - CDS 7335 - 7562 319 ## COG1918 Fe2+ transport system protein A 6 3 Op 4 . - CDS 7563 - 7826 377 ## gi|302859782|gb|EFL82860.1| iron repressor - Prom 7857 - 7916 5.3 + Prom 8682 - 8741 2.1 7 4 Op 1 16/0.000 + CDS 8764 - 11895 4129 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 8 4 Op 2 . + CDS 11911 - 12831 938 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 9 4 Op 3 . + CDS 12843 - 13601 834 ## Elen_1680 hypothetical protein + Term 13649 - 13688 7.5 + Prom 13659 - 13718 5.4 10 5 Op 1 8/0.000 + CDS 13758 - 15554 902 ## COG0642 Signal transduction histidine kinase 11 5 Op 2 . + CDS 15558 - 16178 356 ## COG4566 Response regulator 12 5 Op 3 1/0.000 + CDS 16175 - 17545 636 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 17558 - 17617 3.0 13 5 Op 4 . + CDS 17707 - 19194 2106 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 19238 - 19286 8.3 + Prom 19264 - 19323 1.9 14 6 Tu 1 . + CDS 19346 - 19495 95 ## - Term 19354 - 19393 2.5 15 7 Tu 1 . - CDS 19440 - 22208 2847 ## COG0612 Predicted Zn-dependent peptidases - Prom 22348 - 22407 4.8 - Term 22380 - 22426 12.3 16 8 Tu 1 . - CDS 22450 - 22944 359 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 23029 - 23088 8.1 + Prom 23332 - 23391 1.5 17 9 Tu 1 . + CDS 23432 - 24238 1157 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 24260 - 24287 -0.1 + Prom 24378 - 24437 6.4 18 10 Op 1 . + CDS 24487 - 25101 540 ## COG2917 Intracellular septation protein A 19 10 Op 2 . + CDS 25104 - 25376 390 ## gi|302859794|gb|EFL82872.1| BolA protein 20 10 Op 3 . + CDS 25398 - 26198 671 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Prom 26256 - 26315 4.1 21 11 Tu 1 . + CDS 26336 - 27142 1041 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 27165 - 27199 3.4 - Term 26910 - 26945 0.4 22 12 Tu 1 . - CDS 27185 - 27985 417 ## COG0583 Transcriptional regulator - Prom 28050 - 28109 3.3 23 13 Op 1 . + CDS 28291 - 29871 2159 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 24 13 Op 2 . + CDS 29924 - 30280 496 ## Glov_3541 flavocytochrome c + Term 30313 - 30344 0.0 - Term 30199 - 30246 -0.9 25 14 Tu 1 . - CDS 30392 - 32611 1675 ## COG0464 ATPases of the AAA+ class - Prom 32636 - 32695 6.0 + Prom 32633 - 32692 5.7 26 15 Tu 1 . + CDS 32736 - 33740 652 ## Ajs_0810 hypothetical protein - Term 33734 - 33764 -1.0 27 16 Tu 1 . - CDS 33788 - 34270 525 ## COG0784 FOG: CheY-like receiver - Prom 34451 - 34510 4.5 - Term 34543 - 34578 3.1 28 17 Tu 1 . - CDS 34620 - 34946 594 ## COG3976 Uncharacterized protein conserved in bacteria - Prom 34975 - 35034 5.9 - Term 35096 - 35135 7.1 29 18 Tu 1 . - CDS 35151 - 36383 1455 ## COG0786 Na+/glutamate symporter - Prom 36491 - 36550 3.1 30 19 Tu 1 . - CDS 36646 - 37209 535 ## COG1309 Transcriptional regulator - Prom 37306 - 37365 4.4 - Term 37430 - 37486 5.7 31 20 Op 1 . - CDS 37518 - 39161 2261 ## COG2986 Histidine ammonia-lyase - Term 39175 - 39203 1.3 32 20 Op 2 . - CDS 39261 - 41024 2509 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 41077 - 41136 2.2 - Term 41074 - 41121 5.3 33 21 Op 1 1/0.000 - CDS 41169 - 42437 581 ## COG0477 Permeases of the major facilitator superfamily - Prom 42519 - 42578 2.8 34 21 Op 2 . - CDS 42623 - 43390 708 ## COG0730 Predicted permeases - Prom 43420 - 43479 5.8 + Prom 43361 - 43420 6.1 35 22 Tu 1 . + CDS 43609 - 44085 492 ## gi|302859810|gb|EFL82888.1| conserved hypothetical protein + Term 44146 - 44183 3.9 - Term 44075 - 44122 6.2 36 23 Tu 1 . - CDS 44130 - 45443 1124 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 45521 - 45580 4.8 + Prom 45773 - 45832 1.6 37 24 Tu 1 . + CDS 46062 - 46487 109 ## ECSE_3033 hypothetical protein + Prom 47257 - 47316 3.0 38 25 Tu 1 . + CDS 47426 - 47671 104 ## + Term 47673 - 47707 0.2 - TRNA 47427 - 47517 72.9 # Ser CGA 0 0 Predicted protein(s) >gi|301349814|gb|ADCQ01000036.1| GENE 1 1 - 408 314 135 aa, chain + ## HITS:1 COG:no KEGG:Pmob_1061 NR:ns ## KEGG: Pmob_1061 # Name: not_defined # Def: HNH endonuclease # Organism: P.mobilis # Pathway: not_defined # 1 127 305 431 436 137 56.0 2e-31 NGIAKSHCADAFCIAGNFGAKRLGEFFFQKQTRRNNRQIHKLSILKGGIRKRNQAPFEVK GFRLFDKVACQGEEGFIFGRRSTGYFDVRKLDGTCISAGISYKKLHLLEKRRTYLTEIRK EEALPPPPEGRGLRA >gi|301349814|gb|ADCQ01000036.1| GENE 2 543 - 4628 2608 1361 aa, chain - ## HITS:1 COG:all4900 KEGG:ns NR:ns ## COG: all4900 COG0553 # Protein_GI_number: 17232392 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Nostoc sp. PCC 7120 # 599 1358 101 866 869 560 40.0 1e-159 MLVQDPLSKYPRLGKYALIFSIIPGYFHEYDAEEVIQQAVNSQSVHGFLKLLQDKNVAIA FPSYYKGKYAIKPEVILDYAQVYTPSFIKEAKRTLGRVFKRGDEVQDLYIDFLLQLSSFK LRGNADLNEVLNRCKGDAHHPSSLFTNTVKGLILAMSCRKEWHPLFTRLSKENKVLAWNL FMDAAADKSEDFNLDGTKELFLSLGDTIREDVITWFASEYDLYRTGFCAFNFAQLSDEYW TKDLLKGIFQVSQGGFKEGQKGILSALKEDVKYHRDYFVYYKNPLFFKPIRNVFLTAILF LDRGSASTTRKISSLLKKTEEFSKDIASDMAALVFTFVDNPEKITPFDHEAMASRLKEND SSLAIFVLAVLCKIFSYADYRSILESHLAKRKKENNPPLKYILQQALDALNPNDPEVTKL TAELKCPPLLSHYATLSEWQFGLDKLLNYSKILKKPTSKISRARIVYLVDIDTFDIQPYR QKSKDGITWSKGTAVSMSSFAEMLPEMDEADQIAAAKVVRVNSRVARLRGVEVLYELADT GRTFLMLEPEVPFEIHRDRLRIEVKKDSGGSYETTTNIDFATNLRTDPHYAFELDGSILT IYKITDKEHKVLELLNNIRKLPGEAKGKLAEILENISGEIPVSSELLKSSSALEALKASS KITFQIIPDSSATEFNVRAFVRPAEGCELTVAPGEGLDTLAALVKRKPMRILRDLKAEKA NWELMNEKLEDFSAWQGGGRFWTLNTLKCLEFMEILREASKIADIEWPEGAKLTLRRAPI SFPDLRLKVNSVDCWFSLDGTVSIDGKTQLKINQILDKLKDRVGNFIHLEGSEYVLITNK LLKQLEILEDVSSKKKDELLISKFSGTALETLKENGSEVTGDKSYENLQERILKAQEIEF FIPSGLEAQLRQYQREGFEWLMRLCTWGAGGILADDMGLGKTVQAIAVLLGRKILGPSLL VVPTAVLYNWKSEMVRFAPGLRFADFNSGNREEILKNLKDYDVILCTYGVLNTEIEALSR VEWNLAVLDEAHAIKNKATQTSHSVMKINAQGRILLSGTPIQNDLSEIWNLFEFANPGYL GSYQQFGDRFILPIEKKKDKGKQHLLKQLIGPFILRRTKAEVLDELPEKTELIVPVELSE EELAIYENIRTRTLSGLQSEKINPIEALMALTKLRQAACSPELVDKHLTIPSSKIRVFLE LVRELKENKHRALVFSQFTSFLALVRQALDKAGIEYLYLDGSVPAAQRKKLVETFQNGDM PLFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAYRIGQKRPVTIYKLISEKT VEQKILELHKTKKNLADALLEGSDVAKKLSNEEILELLQLS >gi|301349814|gb|ADCQ01000036.1| GENE 3 4748 - 4999 232 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859779|gb|EFL82857.1| ## NR: gi|302859779|gb|EFL82857.1| putative transcriptional regulator [Burkholderiales bacterium 1_1_47] # 1 83 1 83 83 169 100.0 4e-41 MTLTELKEYVQARRIVSELEIAMHFRVEPSVIEPMARRWIDKGLMAKVDMDGTKCGGCTA CADGIKRHYEWLGPQSVTFVKKL >gi|301349814|gb|ADCQ01000036.1| GENE 4 4996 - 7323 2690 775 aa, chain - ## HITS:1 COG:VC2077 KEGG:ns NR:ns ## COG: VC2077 COG0370 # Protein_GI_number: 15642077 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Vibrio cholerae # 6 772 5 749 758 680 45.0 0 MRKNIIAVVGNPNCGKTTLFNGLTGSHQTVGNWPGVTVERIVGEFTYKDREITIVDLPGI YSLQPSSASSEDERVARDYILQDEAELIVNIVDASNLERNLYLTTQLLEMQVPMIVVLNM LDMAAAHQIEIDPHKLSEALGCPVIGIVASKEQGLKELCAAIDAQLDDLRIPKNPIVFAD DVEEARAKIAKLLSAQKVERAEWTAEQLLEGDAGMGEYLKGVDLSEVDKIIAEINQKYNG DLDIAMADVRYSFVSQATAASMIRKGEIDQSTTDKIDKIVLNRWLGIPIFLFIMYLMFIF SINIGSAFIDFFDILFGAIFVQGFGNLLTSIGSPEWLKTILADGIGGGIQTVSTFIPVIA CLFLSLSFLEDSGYMARAAFVMDRMMRFLGLPGKSFVPLIVGFGCGVPAIMAARTMEKKS DRITTVMMAPFMSCGARLPVYVLFATTFWPLGGQNLVFSLYLIGILVAILTGFILKRTAL KDEAGAFVMEIPPYHLPTLKNLGLRTWDRLKSFIIKAGQLIVIIVAVLAFLNSLGTDGSF GNEDTDKSVLSQIGKTIVPAFQPMGISNENWPAAVGVFTGILAKEAVVGTLDSLYSGMGD RMSAADQEKSGEAKPEEEEEPFSLSAEALKAVKSVGENLSELGDFFVDPLGVSVEKDLTD VDEQAAEQEVGTGTFRAMKHLFDGDLGAFSYLLMVLLYIPCCASIGAMYREVGAGWTTFA ALWTIAMGYGTATIVYQIGRFSQHPVYSSICIGVCLAVILSIIIGLRIKGKEAAQ >gi|301349814|gb|ADCQ01000036.1| GENE 5 7335 - 7562 319 75 aa, chain - ## HITS:1 COG:ECs4250 KEGG:ns NR:ns ## COG: ECs4250 COG1918 # Protein_GI_number: 15833504 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Escherichia coli O157:H7 # 24 75 22 73 75 57 51.0 6e-09 MLLRDMKPGEKGVIKAFRHGLIEYRKRLLALGALPGTPFVVERVAPLGDPVEIKLRGSSI SVRKGEIEILDVEPI >gi|301349814|gb|ADCQ01000036.1| GENE 6 7563 - 7826 377 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859782|gb|EFL82860.1| ## NR: gi|302859782|gb|EFL82860.1| iron repressor [Burkholderiales bacterium 1_1_47] # 1 87 1 87 87 145 100.0 1e-33 MEKNKDLEISLLDAPVGAVVDLVSWGSLSQEDIRKLTDVGIYLDLPLTVSSVTISGPVVV AISNVHVAIGRPVAKELKVLWNKEVDE >gi|301349814|gb|ADCQ01000036.1| GENE 7 8764 - 11895 4129 1043 aa, chain + ## HITS:1 COG:fdnG KEGG:ns NR:ns ## COG: fdnG COG0243 # Protein_GI_number: 16129433 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli K12 # 1 1042 1 1015 1015 785 41.0 0 MRTSRRIFLKSAVGLTGAATAFHASAASRFLPGQVGKWKLADTKEYLNICCYCSGGCGTI CSVRNGQLINIEGDPDNPVNLGGLCPKGAGLTGLRKIVDKDRRLVMHPHRLTQPLVRRPG SSEWEPISWSQAIDEMARKIKKTRDESYTKEENGVTVNRCEGIASYGAAQLNCEEAWLVQ KFARSLGVVQIDNQTRVCHSSTVSGLAPSFGRGSMTSHWCDFQNADVIMTIGSNNVENHP LSSRWCHRAVDRGAKWIVVDPRFTRTASQADMYAPIRPGTDIAFFGGMIHYILEKKLYQK EYVMNYTNATFLIDPSYKFDVADGLFSGWDEKEKAYSNKTWMYQTEKVIPWSTEPGAPGA WADNPGVPKFNHPALKVPKKDASLQDPNCVLNLLAKHYDRYTLQKVSEVTGIKPELLEEV YKTYAASGAPEKSGTILYALGQTQHSYGSQNCRAMCIIQLLLGNVGVAGGGINALRGEPN VQGSTDVGATMDYAPGYLAWPIQQNHPTLDAYLSKETYADGYYMNKPKFMVSMLKEWYGD NATAENNYCYDLLPKRSLKHNDSTIPTFHYMAENQIKGYLVWGMNPAHSEPNTKYCREVL GKLDWMIVADWFATETATFWKAPGMKPEEIQTTVYMLPAALIYEKEGSIANSGRWLQWRQ KAVEPAGQAKSDFEIMSRLFHRIAQLYRQEGGVNPDQITKVNWDYRNPQGQLDIKAVAHA INGYSTKTGKLLKGYGELTADGDTACGMWIYGGYFNNENEKWDAMAQPCTRRSLADPSGL GLYSEFSFSWPANRRILYNRASADMNGKPWNPKKMLVEWDGSRWINNDVGDFVETRVEDG KVVPVPPNNKAFFMTWEQDARLFSYPMKDGPLPEHYEPYESPTKNVMNGRQDSPMVQFTK WKESVKRGNSEEFPIVATSYSVCEHWQSGTQTRNIPWLVEIMPRPFVEISEELAKEKGIK NGDEIRVWNNRGSIKAFAMVTVRYQPLEINGKKTHTIGLIHHWSWASAYATGDTMNDLSP NVGDPNSYIPEYKAFLVNVEKAK >gi|301349814|gb|ADCQ01000036.1| GENE 8 11911 - 12831 938 306 aa, chain + ## HITS:1 COG:PA4811 KEGG:ns NR:ns ## COG: PA4811 COG0437 # Protein_GI_number: 15600005 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Pseudomonas aeruginosa # 2 250 18 265 309 195 42.0 9e-50 MSIYTRKEMAMLYDASKCTGCKGCQVACKQWNVLYSDLGMNAFPFSGSYQNPQDLNGSNR LVMTFKEKKSDNQLRPVEWAFGRRSCFHCTNAGCVTVCPTGCLKYEENGVVSVSPEKCIG CRYCEMACPFDVPRYYGDEPKIDKCTMCWDRLENGMLPACVKTCQPGALHFGPRDEMIKL GKERVEFLKSRGYDKAELYGENECGGLHILQVCKFGAEAQGLVKGAQPSPLATLSKLAQP GAGLAAAATVAGLAVSFVAALGYRRRKMTIEEAKEHWTPAQRKRGEEYLREAKKEAAEQE RRENAE >gi|301349814|gb|ADCQ01000036.1| GENE 9 12843 - 13601 834 252 aa, chain + ## HITS:1 COG:no KEGG:Elen_1680 NR:ns ## KEGG: Elen_1680 # Name: not_defined # Def: hypothetical protein # Organism: E.lenta # Pathway: Glyoxylate and dicarboxylate metabolism [PATH:ele00630]; Methane metabolism [PATH:ele00680]; Metabolic pathways [PATH:ele01100] # 4 234 30 252 255 236 49.0 6e-61 MITKYIQRHSVLARITHGVVAISCILLAITGLFVMITAWNNGVGSEFTIAMRWTHRLLAI PFILIPLLAIIISPKGFVHLFKNNIFGKWDADDRTFAMRFIPYLFAPGKVHMPPQREVKS LQRVADGTLLFAGVFAAISGMILWLNTGLLPGGEWAYHFSQSTLLTAKIVHDISFIVIIV FGLGHIYLGAGIFEPYHGTLNLMFGNGKIKEADAAYHWGYWANNELAIGKNVVEVKDGKK KRGDTASEGWEK >gi|301349814|gb|ADCQ01000036.1| GENE 10 13758 - 15554 902 598 aa, chain + ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 12 596 4 566 571 139 24.0 1e-32 MVKVLTRIYHICAKLLLMRKWVFLCLLFLPFLSSAAEREIRIGLIDTFDQDFYLETFVPT IEHIQKTLKDYKITVVELQQNNLLANVVKERPDFLVSSAGNFVTLISKLGAQQIATVSRN HAYSPKEAVSSVFIVRNDRKDLQKITDLKGRVLSATEPHDFDGMLVGMGEIAARGFDPDT FFSKTLFSHYQYPDVATYVKVGAADVGILGTCQYEKLLTTGQIQPGEFRVLEAKNNTEAC IRSTERYPDTVFYALDTAPIDEVKAVSLSLLSMPKGEFDFEWVPASGFLKVYDLMKSLKL GPYEHLRETTVKDFILSHQKELLLAALLLCAILVHVVRVNWLVNRRTEELKFALAVQRAT ERKARENRQKLDLLEKSRVISQMSSIFAHEVKQPITNLIYYASALSLLLQQLGVKDDRVE YALKQMNSQAKRTSDIVEHVRSYAKHKANRSEVFNLVEVIRRAINSINKEEIEGVQTTAN LPQEAIAVGDSFEIELAVLNVLKNALKAAKNSLNPQTSVSVTAQKHMWKITITDNGPKIS EEIFSALGRPTSTSKKDGLGVGLSIVLSIIENNGGHLTFRQIEPNGIAVDLFVKKKEE >gi|301349814|gb|ADCQ01000036.1| GENE 11 15558 - 16178 356 206 aa, chain + ## HITS:1 COG:mll0983 KEGG:ns NR:ns ## COG: mll0983 COG4566 # Protein_GI_number: 13471099 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Mesorhizobium loti # 4 188 33 217 246 130 39.0 2e-30 MSNQMLSPVVRIVDDDASVCESQSFFLQLAGFRTRSFSSAEDFLRDDDAEAPGCIILDVR MGGMTGIELQQELNRRGSDLPIIFLSAHGDIEMAMSCVEAGAFNFLVKPPEPEKLQSLVT KAVEKNRMERRQKAHALNLKRLFDTLTTAEKNISYQLAKGLSNPQIAKLLGISERTVQTH RARVYGKLDIENPVELNDFLHEMEEA >gi|301349814|gb|ADCQ01000036.1| GENE 12 16175 - 17545 636 456 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 28 454 43 481 484 194 30.0 3e-49 MIRRREILALPLLGVVPRAIAQNFHCGILVVGAGGAGLAAALEASAYSDSVVLIEKESFI GGDTLYSGGFFNAPNTEFQNRKGIKDSEEFYLQQITQSANGRGNPKVQTKLAKEAANTLN WLRKNGVTFGDEIYQIYGSGYRRSHKPVTALGSSYVQNLAAACLKNGVSIRTSTRLESFE VLPNQRGFRVTISSKGVSSVITSRALILCAGGFANNPELIRRYVPNLNFKYSDSRGTGEV LQRAIEAGVQVENMDAVECIPEGSILSKYSARLYAMAPGTVFINEDGERFVDEAATRKTI SEALIKQGAKRCWTIVDIRSVKRLDKSQQKNLYRAYFAGQVWKNDTLETLCKDINVPFEK VKASFEQVDPRHRPSVAPFWAVRMYPWIHYTLGGISINEQAECLNKFGIPIPGLYAAGQI TGSVHGENRLGGNGLTDAFTFGRIAGKNAARWIKEN >gi|301349814|gb|ADCQ01000036.1| GENE 13 17707 - 19194 2106 495 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 39 488 59 497 506 157 30.0 5e-38 MQTSRRSILKGSILASLAGTMGATAMSASAAEKQAALPKKEYDLVICGLGIGGIVTTIRA AQDGLKPVILEKMSSASGNTIYSAGFMLGVNTKMQQEKKLETGDTVDKFYEDMMKVSQGR GDPKLTRLVAEKADETLNWLHDYVGVKYAVGMKLVWPMLQRAHLTIGEKKPGGTQLMLYL LAKAKELNVPIVYNAKAVELLDNPQNGKVIGVKVKSKEGFEEYFGKYGVVMATGGFSANK MMLTMMAGVPAANMPVRGSHSVTGESILLTGPYFPKVVNVDQYHCGPIHGPTGANPLNIV NTGIAVSKETKRYTDEGKTYVQMSRDTAALTRDNWGYMIVDEDTHNLPMLKNDWFSYSSH KAPVYKADTIEGLAKEAGLNPVELKKVVDEYNAALKAGKLGELTPPNTHKNPRPILKAPF YAVPFQGGMTATFGGPLINTNGQVLDTEGRPVPGLFAVGNAAGGLFYDNYVGGAQLTSAS VIGRQIADYVKTLAK >gi|301349814|gb|ADCQ01000036.1| GENE 14 19346 - 19495 95 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEEKKKRAEFLGSALKISINGSQISLTTSEISLVFSVTLSSGLRPTQK >gi|301349814|gb|ADCQ01000036.1| GENE 15 19440 - 22208 2847 922 aa, chain - ## HITS:1 COG:DR1598 KEGG:ns NR:ns ## COG: DR1598 COG0612 # Protein_GI_number: 15806606 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Deinococcus radiodurans # 40 914 70 951 951 631 40.0 1e-180 MKIAKKLAVAACVASAFTMMNTQAEETKAPVSVSQASTALPAGVTQGPSIEGVTEYRLTN GLRVVLFPDASKDTATVNMTYQVGSRQENYGETGMAHLLEHLIFKGSKNFPNPTKEFTNR GFRMNGSTWLDRTNYFVSFTATEDNLKFALAWSADAMRNSFIAKKDLDSEMSVVRNEYEM GENRPSSVLMKRMQSMMYDWHNYGKSTIGNRSDIEHVRIENLQAFYHRYYRPDNAVLTVS GKFDVQKTLEWIVKDFSLIQNPKEALPAEWTVEPTADGERVFEIRRKGETQMVAVGYRIP SALHPDALGVEVATEVLADSPNGRLYEALVKTGLAANVFGYAVGAKEPGFVIFGASVKKG ESLEKVKDKLIETIEGSLKQKPMTSKELNRTKAQMETMYERAFADPEGFGVGLSEYIALG DWRLFFYGRDKTKDVTAQQADSAADKYFVRDNRVVGLFIPDDNPQRAEITKAPSADELLV NYKPQGTAQKIEAFDSSFDNLDKRTQRIDIGDLNIALLPKQTRGETVTVCMKFKSGDEKN LFGKANLQPVAAAMLTRGTKTMTRSEIEDRMTELKMAGSITNFTTTRKNLPAALELVFDA MHNSIMPQDEFDQFKKQMQVMIESMRDKPDALAQNAITQHFNTYPKGDPRYEYSLDESLE QLNKLTVDQVRAFYKEFGGTSRGEISIVGDFDPKAVEKIIRDDYAKYVSKAHYAPVVTEY RPVKATRVVIDTPDKENAIIVARSVFPINDTAPDAPALTVANWILGGGTGLSNRLIERLR QKEGLSYGAGSHVRIPAKGDNGSFVFRAIVAPQNMLQAEASARDVIAKAIKDGFTDQEVE EAKKGLLQAMQVARSQDDVVARSWNDKMENQRTWAFSKKQAEAISKLTTADVNAALRKYI KPDEITFVLAGDQKKASQKKQD >gi|301349814|gb|ADCQ01000036.1| GENE 16 22450 - 22944 359 164 aa, chain - ## HITS:1 COG:AGl997 KEGG:ns NR:ns ## COG: AGl997 COG1917 # Protein_GI_number: 15890615 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 32 159 23 149 151 109 46.0 3e-24 MLKLISALLSSLLVMGSAVAADEQIPAGDQLVKRGDAIQSIKGSDKIFTGEVKIVPLSES VPGMSVSSAYVIFEPGARSFWHTHPIGQVLIIVEGEGRSGVYGKPVSVLKKGDVVVCPKG IKHFHGAAPDKRMVQMTVTGYDPQGKNVTWMEPVTDQQYKNSEK >gi|301349814|gb|ADCQ01000036.1| GENE 17 23432 - 24238 1157 268 aa, chain + ## HITS:1 COG:RSc1744 KEGG:ns NR:ns ## COG: RSc1744 COG0760 # Protein_GI_number: 17546463 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 24 245 19 237 255 104 32.0 2e-22 MKKLLLATALAALAAPVFAQTAFIVNGQTVSVADQQELMKVLADRGVKDQKQQLEAARSI LAQEKLIEEAAKKANIAQDPAVKALIAERQTEIYSAELVRKNAAAHPLTDADLKKTYEEV KKQYDPNEIKVRHILVKTEQEAKDIIKSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNI RRIAIPGFAETAMALNKGALLPVPFHSALGYHVIQLQDKREVPLPSFDALKPQIQNLAAQ RQAQQYMADLMKNAKIAEAAPAKKKSSK >gi|301349814|gb|ADCQ01000036.1| GENE 18 24487 - 25101 540 204 aa, chain + ## HITS:1 COG:RSc1746 KEGG:ns NR:ns ## COG: RSc1746 COG2917 # Protein_GI_number: 17546465 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Intracellular septation protein A # Organism: Ralstonia solanacearum # 1 198 1 175 186 144 42.0 1e-34 MKFLYDLLPVILFFGTFKVAQTNPDSAAALCNQWLGSGFQADQAPVICATAAAIIVSLLQ IGVKFVRREKIDPMLWISVAVILVFGSLTIWLHDEMFIKWKPTILYWIFGGILLGGSFMH KNFLKSLLGNKVSLPEPAWNILLRGWIGFFAVTGFLNLIVAYTCSTDVWVNFKLFGLMGL TLLFTLGVGFYISRFIPESDSEGK >gi|301349814|gb|ADCQ01000036.1| GENE 19 25104 - 25376 390 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859794|gb|EFL82872.1| ## NR: gi|302859794|gb|EFL82872.1| BolA protein [Burkholderiales bacterium 1_1_47] # 1 90 1 90 90 166 100.0 4e-40 MSHTPTLERISQALEPIFPIELRFTDYTRPEAGRAPAAGSLYHLFVISRRFEGLPKIDRH RIVYEYLKPFIGHGIHNINMTLLAPSESRH >gi|301349814|gb|ADCQ01000036.1| GENE 20 25398 - 26198 671 266 aa, chain + ## HITS:1 COG:RSc1744 KEGG:ns NR:ns ## COG: RSc1744 COG0760 # Protein_GI_number: 17546463 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 42 257 33 254 255 110 28.0 4e-24 MLKSFVLAAALAGVLPAAVAQTAFTVNGQFVSVEEQKQLMDFLRANGVTNEKQLENAARS ILLEQKIIEQAARNEGLLEDPRVRVLISEKQAQLYGSILSRRYASEHPITEEQVRNRYDS LLSSYDPHEIKFRHILVKTPEEAREIIQSLKVGSDFGSLAKERSLDQSTSQNGGQIPFTN IRNVLVPGLAEAILALQPGDLLPVPFKSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELE RLQTTEFLNDLQKDAKILKVSDSSVD >gi|301349814|gb|ADCQ01000036.1| GENE 21 26336 - 27142 1041 268 aa, chain + ## HITS:1 COG:RSc1172 KEGG:ns NR:ns ## COG: RSc1172 COG0623 # Protein_GI_number: 17545891 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Ralstonia solanacearum # 1 264 1 262 264 285 58.0 9e-77 MGFLTGKKFLITGISSNRSIAYGIAKACAREGAELALSYNNERFKERVQGFADEFGAGQV IKLDASSDESIDLAALELANRWTDGFDGFVHSIGWAPRESISGSFLEGASREGFLSAMNV SVYSYIAMAKRMVPLMAGHKASLLTLSYLGGEKVVPNYNTMGLCKAALESATRYIAADVG PQGIRANTLSCGPIKTLAASGIKGFSSMLAQCKAVSPSRSLVSIDEVGNTAAFLLSDNSL GITAETIYIDGGFNALACCVDQTASENA >gi|301349814|gb|ADCQ01000036.1| GENE 22 27185 - 27985 417 266 aa, chain - ## HITS:1 COG:RSc2018 KEGG:ns NR:ns ## COG: RSc2018 COG0583 # Protein_GI_number: 17546737 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 6 238 67 297 321 60 26.0 2e-09 MEGIWVPTNYYLQIKPQIHQILEASEAMMDMQFDPSQSTRTFVLSSVMTEISVVISGVLP KMIERAPKVRLDLSKHDNEIAAVSEGKADFAVITDVDLAPDLHRMKLYPLDRVLLVRKGH PLTQLKGPLLTRYLQVYDRVSIRTGRSASWVGPEQGLFQYERFMEHTRFSTSRFYSAWGA IEKTNLISVCGWRAAELAMKAYKLTALPLPIDFEETEKWNVLIWSDSKHRDPAHKWMRGL FKEWAIEDAERMKKLKEKDLGVPKYK >gi|301349814|gb|ADCQ01000036.1| GENE 23 28291 - 29871 2159 526 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 8 524 41 505 506 139 27.0 1e-32 MLRRSLLTSAIAASLLTTFSLPAFATQVYETDLVIIGGGLSGLAAAQSAVDQGAKPIVLE KEAALGGGGNFPEGSLGVGTRYQKEHNINTTVDQVLTAALQYHHYRADPHVLRVLIEESG KTIDWVMDKGAQMRGIRTMYPKDESLMTWHLFKGGAAGIIQRFAKEVRAKGGTILTETPA KKLIVENGKVVGVEAVDGEGEKVIVKAKKVIIATGGFESNKEMLAKYVNDSSALGMFEPV WYRGPVTDGKNGDGRTGDGIQMAQLVGAGVKGMHTIAGNAPYLADLPPINQFMGADELKQ GRCALAQPWLWVDQHGKRFFNESRGAVFVDVYNAMTSAGGVMYNIIDQQKYDQLVNKGAL LPFNAIVLAGVPLKALPKTFEIGQQRGWAFKADTIDDLAAQIGVPASNLKETMNKVNEYA KAGKDPEFGRLPEHLATFNMEKGPYYALKGIRAFFLTLGGVTVNPKFQALNPQGDVIDNL YVVGQDIGGLYDSSYDLRCEGSASSFAMTSGRLAADNALADVKAGK >gi|301349814|gb|ADCQ01000036.1| GENE 24 29924 - 30280 496 118 aa, chain + ## HITS:1 COG:no KEGG:Glov_3541 NR:ns ## KEGG: Glov_3541 # Name: not_defined # Def: flavocytochrome c # Organism: G.lovleyi # Pathway: Citrate cycle (TCA cycle) [PATH:glo00020]; Oxidative phosphorylation [PATH:glo00190]; Benzoate degradation via CoA ligation [PATH:glo00632]; Butanoate metabolism [PATH:glo00650]; Metabolic pathways [PATH:glo01100]; Biosynthesis of secondary metabolites [PATH:glo01110]; Two-component system [PATH:glo02020] # 15 118 21 122 589 70 35.0 2e-11 MKFNRLITTAAILLAGAFCTAQAAPTMAKHMQKGVTCEQCHNSSAPVAAAKSKACMKCHN YQDLAAASAAKKVALNPHDSHAGQLRCTLCHKEHEQSVLYCRQCHKNAEDKRFDMAVP >gi|301349814|gb|ADCQ01000036.1| GENE 25 30392 - 32611 1675 739 aa, chain - ## HITS:1 COG:RSc1961 KEGG:ns NR:ns ## COG: RSc1961 COG0464 # Protein_GI_number: 17546680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Ralstonia solanacearum # 255 737 267 769 771 217 30.0 8e-56 MPRRRTSVFEKMFSDNRLRSIPDSEQQGTLCVEYWTSKILIELSGYKSLELDDVQEMANI RVVKAWQQEIENDVSELYELKGKEEGDTELLDDAGDSVFSRYKSVKTELRKRIDNPPVSM KKVYRNIKKEIDLHGFYPKGFAANLELIKEAYDLSEDEGLVTAFIFFTLAYRNLRRALNS FSYSDRGFFLVLEVIAKTLGLPLEKVQEMLGPDGKLIRMAIFGVDRESSNIDFEDYFESK SGISFFDLFFGKIEKKQLVSSILTPCNKSRLTLEDVKYLPVIDSLVVPFLKGIKDEGPRG VNVLLYGPPGSGKTELGKLLIEQAGKKAYTLKLGREEKVLACWERACKLSRNDAVTAILI DEADDVFNSDLVQGTTDRTNKARINTALENTKKLTVWTTNSLRSMDAAIIRRFHFVLKVG YPPRAQMEKLAQGALAKSLSEENISRLVNTENLSPALVAQVGEIVDNLQGNKVKFPEDSL MALLEDILKAQGFGKLAAATKKIGKFDPALSNSDTDLEALSKGLKEAGAGRLCLYGPPGT GKTEFCHWLAKKLERPLIMKKASDLLNCYVGGTEHNIAAAFEEAKRENAVLLFDEIDSFL QDRRTANHSWEVTQVNEFLTQMESYEGYLVATTNLLDLMDNACLRRFDLKAKLEYMTDDQ AEEMYRRLAQKWKFSVGNEVNNLRKIRNLSPGDFAAIDRRLRFTKAVSGEKIVDMLKVET QLKEGQMSSSRRTIGFLDN >gi|301349814|gb|ADCQ01000036.1| GENE 26 32736 - 33740 652 334 aa, chain + ## HITS:1 COG:no KEGG:Ajs_0810 NR:ns ## KEGG: Ajs_0810 # Name: not_defined # Def: hypothetical protein # Organism: Acidovorax_JS42 # Pathway: not_defined # 1 308 1 309 329 189 33.0 2e-46 MGRKHDKKEEASIILEILNRIPLSKRFVSVDDILNSLASANIDVSRRSLQRYLKQMYDCG KYGLVRDDRGNAYGYRRERTDSITDNIHLKPNECLLLRIAQEHMKYQIPGTVLKSLGFLF DAASEMLKEKGSNAKENQWLNKVCVISSSIPQMPSKVLPRIFDAVSEALYSEKKLRIEYT NMNGKTTSAVISPLALVQQDVRLYLICQFDHFDNVVHLALHRFKKAEVTSFDAHRPEEFD LQSYIHDRHFNYSNGEWVHWILEFKSDVTAKNLEETPFNTSQKLLKKEDGTWRLEVDIQD SRMLDGWVTMWKNDAQITLSQKEYLERETGDYDE >gi|301349814|gb|ADCQ01000036.1| GENE 27 33788 - 34270 525 160 aa, chain - ## HITS:1 COG:sll1905_1 KEGG:ns NR:ns ## COG: sll1905_1 COG0784 # Protein_GI_number: 16330477 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Synechocystis # 8 113 20 124 125 68 38.0 7e-12 MGQAKNTILIVDDVELNRDVLSIMFSQRHEIEFAESGPEALDILRKKKEDICAILLDYVM PEMDGLTFLEEAIKEGLVESIPVFLITASLEHDVVHRAYSLGVADYIQRPISPYIAQRRI ENIIDLFKTRAAYKKLLEINRTLLERLSEVDDSITDVRNP >gi|301349814|gb|ADCQ01000036.1| GENE 28 34620 - 34946 594 108 aa, chain - ## HITS:1 COG:CAC2762_2 KEGG:ns NR:ns ## COG: CAC2762_2 COG3976 # Protein_GI_number: 15896018 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 21 108 46 132 132 57 39.0 4e-09 MKKLVLLLASFCLMTAASAAYKDGTYEGQGDGNHGKIDVSVVIKGGKIADIKVLKHTETD MIIQAPIDNMIPEIIKKNGTKGVETIAGATNSSKGILAGVNAALAKAQ >gi|301349814|gb|ADCQ01000036.1| GENE 29 35151 - 36383 1455 410 aa, chain - ## HITS:1 COG:FN0793 KEGG:ns NR:ns ## COG: FN0793 COG0786 # Protein_GI_number: 19704128 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Fusobacterium nucleatum # 7 410 1 393 399 233 36.0 5e-61 MNSSDGMLIVNVSAIQAVAIAAVTYYFGAWLRKKVPFLEKYSVPSPVVGGMLVALVLSCL EYFHFMKVNFDTSLQTLLMLAFFTTIGLSASLKIVTEGGKLLVSFLFVITILCVLQNFLG MGLAEMMGLDFHYGLLAGSVSMMGGLGTSAAFGPYFEQTYGVQGGTAVAITAATFGMVVA LLIGAPFAEWLIRKYKVITPKEVDTPEPELHIPEDLETTVVEGEKDPTYTPQLLKAGTIV AICMGLGAVLSQYMGQYITLPAYIGSMIVAAIVRNVGDFSGKYTVEGKGMNAIAEISLVL FVTMAINGLKLHELLNLALPLMIILAGQTILMVVFAWAMFFIFGKTYDAVMLCAGGIGFS MGSTANGLANMQAIAEKYGSSPRAWLIISLVGAFLIDLINALLVTWMGAW >gi|301349814|gb|ADCQ01000036.1| GENE 30 36646 - 37209 535 187 aa, chain - ## HITS:1 COG:slr0895 KEGG:ns NR:ns ## COG: slr0895 COG1309 # Protein_GI_number: 16331647 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 1 154 18 170 187 59 25.0 4e-09 MDATRAFIVREGVGRLSIDKIVKESGTSKGAFLYHFKNRKALFCALVEEYVDHLNERMNF HMSKYQDAEEPLILGYASWYEDFDKDDGGFAVLGVALLALLLHEPDALKPFHDWYAKVFK MVQDSPIKTPQLLTAIMAFEGFFFTHKMGFDSLDKETKEATWKYIIEQVAPQPKRKTVES SKEKISA >gi|301349814|gb|ADCQ01000036.1| GENE 31 37518 - 39161 2261 547 aa, chain - ## HITS:1 COG:SMa0306 KEGG:ns NR:ns ## COG: SMa0306 COG2986 # Protein_GI_number: 16262618 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Sinorhizobium meliloti # 6 545 11 542 546 436 44.0 1e-122 MKTLKLSACVIAIFAAMNANAVELNGKNLTQQDAWAIAEGAPVSIAPEAMNRVQKSYDLV LDAAKNGREIYGLTVGVGLNKDHKVLSANGELSDEVKAASRRFNYSTLRSHSVAAGPILD PKLVRLAMAIRLNTLLNGGSGVQPRVAELYAEFLNKGVTPVIPTKGSLGDADITLASHVG SAMIGEWKVLVDGKEVPAAEALKAKNIKPLIPEGKDALGILSNSSVAMALTMDAAKAMGQ ILKVSPIVYGISLEGLNGNVAPFLSQTTAFHPFPGLQEKAKELREVLAGSYLWKKDPSRR LQDPLSFRTTVYTLSEAQNALNDLNKVIDVQINSSDDNPGVMVNADKADTQYDQVAQYFI KTPKAEGAIIPTANFEVLPVALAVQRATVALGHVGHNAVQRTMRLDEPAFTDLSRYLAAK DNLGHAFGATEDTLVSIYAENIDLANPVSLDSFPVEGNIEDSASNLPRAAQRLKRATDNT FLVLSMELLHNTQAADLRKMQNKNFKMSPATEKPYKAYRVNSPFVDQDRIYTIDLQNGDE LLKNYQP >gi|301349814|gb|ADCQ01000036.1| GENE 32 39261 - 41024 2509 587 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 88 586 1 482 484 293 41.0 8e-79 MFKTSILFTALLSAAALTSVSAAPVQTEGTGIGKHGDIKLAVTFDNGKIQDIKVLEDHEN KVLAAKVFTDLKDAVIANNSVKVDGIAGATFSSKGFLNAVSDAAKKAGVKLSDKVKKDKK ADAAMPAVQNYDVVVIGAGGAGFAAAVEAKSKGANVVLIEKMPTVGGNSLISGAEMNVPN SWVQNKLNIKDDTPARMAADTLKGGDFQGDPEIVGVMTTNALPTAEWLRDTVGVNFEKDN VFQFGGHSRKRALIPEGHTGTEVITKFSALADKMGIPVITNMKAEELVKDKDGRVVAVKA ISGGKEYTFNAKGGVVLATGGFGANAQMVKKYNPAIDERFKTTDAPGTTGEALYMAEKAG GQLVNMGYIQTYPICDPISGVIELIADARFDGAILVNQEGKRFVEELERRDVISNAILKQ PGAYCYVLWNDNIGKISNTVKIHDTEYKTFTKQGIMHTSDTLKGAADYFHIPYANLKATV DRVSQMAKDGGKDLDFHNRGGLKDLSTGKYYIIKAVPSTHHTMGGLKINTKAEVLDKNGK PIPGLFAAGEVTGTTHGTNRLGGNAYTDIMVFGRIAGDGAAAEAKAR >gi|301349814|gb|ADCQ01000036.1| GENE 33 41169 - 42437 581 422 aa, chain - ## HITS:1 COG:STM0079 KEGG:ns NR:ns ## COG: STM0079 COG0477 # Protein_GI_number: 16763469 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 14 418 18 423 446 206 32.0 8e-53 MQVIENKENFSGSRLCVSATGAAFMDGFVLTSQGFIFLLAQSVFQFSALELGLVATAYVL GSFIGSMGFGKIADVYGRAVLFRTVPWFVAALSIAQFVNFSPLSWFISRFLFGLAIGGDS PIAQAMLSENSPKSLRAKRLVLLMTAWFIGAIAAAVCAYMTVKAGLPWEFFAAIPCVIGL ILGVARFNAPESVQWLKSKGRIKQAEESRLRLGIEAEEAKHEVKAAHQAALFKPINLKNL AYLSVFWICQAIPVTVLLMFGPVLIGALGTSNFDTDVGQLVLTDSFFLIGSLAAIKIVPH FARRPVILWTFGIMAVSLALLSPGQVLTNFVVCLLLSIYALSYGVQSVLDYVYPAELFPT SIRSTALGILGSVSRVGVFVVTLGFPMAFEGLGVSSVLLIGAAISMFGFVISWLFAPEPS HH >gi|301349814|gb|ADCQ01000036.1| GENE 34 42623 - 43390 708 255 aa, chain - ## HITS:1 COG:VC1856 KEGG:ns NR:ns ## COG: VC1856 COG0730 # Protein_GI_number: 15641858 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Vibrio cholerae # 7 249 10 253 259 126 33.0 5e-29 MEITFGVLIFCIVAFFVAGFIDSIAGGAGFVTAPSLLLIGMPPHMALGTGKLATSIGSVV ALWTFWRSNLILKKIVPVGVLSAMAGASFGAFCALQIDGATMGKVIVIMLPLGILFTVLT GGFKLTEGELPKDHFWLRVVLIGVLIGFYEGFFGPGAGTFFLIALHVFLKIGMVQSSGTA KAFNIAANFAAFMTFASGAAVCYEIAIPCAIASMLGNRVGAYYAIKIGGKFVRNILYIVL IILMVSLVYKFFIAS >gi|301349814|gb|ADCQ01000036.1| GENE 35 43609 - 44085 492 158 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859810|gb|EFL82888.1| ## NR: gi|302859810|gb|EFL82888.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 158 1 158 158 317 100.0 2e-85 MTNELDPKTPVLKGVVTEVLDNGNAGKINCGHGNIYTFVSDQLKTGYLPVLKDVVEFNLI EDQPFAIRLFHRSQALHDSSSSSASLDLRMKCPHCGKPILPKAEFKEGRLIATHCPECNA ELDKIERPPKTTFFTWLIAILAALIVGIVVYGIFEPNF >gi|301349814|gb|ADCQ01000036.1| GENE 36 44130 - 45443 1124 437 aa, chain - ## HITS:1 COG:YPO3526 KEGG:ns NR:ns ## COG: YPO3526 COG1253 # Protein_GI_number: 16123672 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Yersinia pestis # 9 429 5 425 443 428 51.0 1e-119 MEMDLTTRIIAIVVLILFSGYFSMAEISLAASPKVKLHQALDAGDKRAQKVLDLQVKPGP FFSVIQIGLNAIAILGGIIGETLFSPFFEELFLYFCSPELASSLGFFCSFFTITMVFVLF ADLIPKRIGLNKPVSLALMLIGSMMFLIWLFKPFVWLLTEMSNGILKLMGLPTKNETTIT SEDILATVGAGTEAGLLDSSEQEAIENVMSLEDRLVTSAMTPRDSVTYFKISDTFEKIRP LIESNPHSKYLVCDSTIDRVLGYVDSKNLLCKALENDKFSLKEKGLVKTIPMIPDSLSLS EALDTFKKQGRDFAAVVNEYALTVGIITLGDVMSTVMGSLVQTEENSYIVQRDDGTWLLD GSTPIEDVERTFEIEKMPEEETYETIAGFMMYMLRKIPKLTDKVEYSGYRFEVIDMEMNR IDQILVTKLPITKEDPD >gi|301349814|gb|ADCQ01000036.1| GENE 37 46062 - 46487 109 141 aa, chain + ## HITS:1 COG:no KEGG:ECSE_3033 NR:ns ## KEGG: ECSE_3033 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 4 135 11 142 281 89 44.0 4e-17 MVVIGSSPLTRGTLAFDDASYSAARSIPAYAGNSAQGKARNLLRSVHPRLRGELAVVTAQ RIVKSGSSPLTRGTRENSSPHEFHGRFIPAYAGNSNHKDASREIKPVHPRLRGELECKPF YGLDFGGSSPLTRGTRRFHGY >gi|301349814|gb|ADCQ01000036.1| GENE 38 47426 - 47671 104 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAEGEGFEPSIRYNRIPDFESGAFDHSAILPLEGGILSELFKVGMLTNFLRPICVTPTNP IAAKKFFLRNLLVPCNNNIFA Prediction of potential genes in microbial genomes Time: Fri May 13 06:14:28 2011 Seq name: gi|301349813|gb|ADCQ01000037.1| Burkholderiales bacterium 1_1_47 cont1.37, whole genome shotgun sequence Length of sequence - 6379 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 220 123 ## gi|302859813|gb|EFL82891.1| transposase - Prom 241 - 300 2.1 2 1 Op 2 . - CDS 307 - 1200 402 ## COG2207 AraC-type DNA-binding domain-containing proteins 3 1 Op 3 . - CDS 1237 - 2409 506 ## Rleg_2470 exported protein - Prom 2439 - 2498 4.3 + Prom 2439 - 2498 4.5 4 2 Tu 1 . + CDS 2604 - 3260 381 ## COG1878 Predicted metal-dependent hydrolase 5 3 Op 1 . - CDS 3284 - 4762 843 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 6 3 Op 2 . - CDS 4765 - 5391 425 ## COG4566 Response regulator 7 3 Op 3 . - CDS 5375 - 5947 352 ## COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system - Prom 6055 - 6114 2.2 Predicted protein(s) >gi|301349813|gb|ADCQ01000037.1| GENE 1 1 - 220 123 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859813|gb|EFL82891.1| ## NR: gi|302859813|gb|EFL82891.1| transposase [Burkholderiales bacterium 1_1_47] # 1 73 1 73 73 121 100.0 1e-26 MSPQFRVTLTKEEVEELQKISSTGSRSAKIVLFARALLLLDKGPHTTEHWTVNQTSKAVG LSERTLNHLKEKF >gi|301349813|gb|ADCQ01000037.1| GENE 2 307 - 1200 402 297 aa, chain - ## HITS:1 COG:SMc00679 KEGG:ns NR:ns ## COG: SMc00679 COG2207 # Protein_GI_number: 15966446 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Sinorhizobium meliloti # 1 291 1 296 313 171 32.0 2e-42 MEETREALVQKLLDIYSKEGNYETSVPGVWVHRSERNKVPKPHIYQPMMIFILSGTKLIK FGSAEKIFSPLDYFLTVLTAPVTSGIVGVTSEEPYLALSIDLEAEVITSIAYEMGLKPQS AEPAKAASCVPMSVEMQGALVRLCNTMNNPEEARILGPILKREIFYRVLTGPLGYSVIRF NSLRTSEYQIARAVDWIKINFKEPLAIDDLAKKVFMGRSTFHRKFKEVMTVSPLRFQKEL RLQEAHRLMLLKNLSVTQASYEVGFEDPKFFTREYKDYFGLSPRENIKKIRAEEGIN >gi|301349813|gb|ADCQ01000037.1| GENE 3 1237 - 2409 506 390 aa, chain - ## HITS:1 COG:no KEGG:Rleg_2470 NR:ns ## KEGG: Rleg_2470 # Name: not_defined # Def: exported protein # Organism: R.leguminosarum_trifolii_WSM1325 # Pathway: not_defined # 31 368 31 362 362 256 41.0 1e-66 MKTKRALLSAVISACFLLQGSAFALDEPQTQTKPLVLNQLGGLAFGGTVSHKPNGLTFHG DHGYAQYVIPVNAKNYPIILWHGIGQSGRSFETTPDGREGFQTLLPRDGWATYIVDQPRR GRAGRTEATEAKSEIPTVTSEAGVWNAFRLGRWVPPKPATANPNMQMLLDGETINQFMRM QTPDTGALPPTEAYGWKLGEAMRDLLKRTGPAVVGTHSYAGQIGWYGAMKSPDLVKAVVA YEPGQVVYPEGEKVKEMNSEIPLVQQRLNPVRVSKQEFLKLTKMPIFIIFGDNISTKSSK VFNEEVWRWALFNARQFVNLINKYGGDAKLIHLPEIGIKGNTHALFSDLNNKEILKITEE WLAEKGLDKNDDPHLAPKRSVSPVTIPLEK >gi|301349813|gb|ADCQ01000037.1| GENE 4 2604 - 3260 381 218 aa, chain + ## HITS:1 COG:TVN0858 KEGG:ns NR:ns ## COG: TVN0858 COG1878 # Protein_GI_number: 13541689 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Thermoplasma volcanium # 6 215 6 214 218 110 33.0 2e-24 MEQGMKVIDLSHAINERMPVFPGSEKPQLTTVATYEKDGYHETLIRMYSHVGTHIDPPAH VYEKGLTLDALPLTQFIGQALVIDCRHRKSEKPITMKEVNEAREDAETADFLLFNTGWDK FWGSEEYFGDYPCIDDDVLDFILLGNYKGIGFDVMGIDPISDLSLHRHKKLFKNKYIINI ENLANLDQCGSGLFNFSCFPLKLENADGAPTRAVAWWE >gi|301349813|gb|ADCQ01000037.1| GENE 5 3284 - 4762 843 492 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 20 490 31 477 484 199 31.0 1e-50 MKRRTLLLSPLPFVLSSLVNAKPIEKTETAEIVIIGAGAAGLFAAVAAKENGAGRVVLIE KNPSPFFSSTSYSAGSVNASGTLAQLKHGIQDIDGKEEFTEEILRQGNYENDKALVANYV KNAAPALDWLTEKGVELTPSTNIAFRVKRMHGCDLATGARYVEVLFSEAIRLGVEIWFNT KAIELITEKGNEVLGVQYKRGRSYGNLLAQKGVILCTGGFAGDVNRVDRDIPKFAGLPTF ASPSSRGEGLDMATRIGAATHLLDYMGAYAYGFPLDEETRRGLIFRGHVMNLYGSITLNK AGKRFINDDQNSTKVAQFLTSHHERTVYQLATEAQLSDFMKNDPIQVIGWDRTKFNQEKE EGGHFINRVNSLEECASEMGCSFDALKNTIDAYNRSVASGNDGEFGRKFMKGQFLSGPFY LFKCTPVVGITIGGLKVNRQMQVLNEYGEPISKLFAAGEVVGGLHGTSYIGGCSLAGALA LGRMVGEQLAKS >gi|301349813|gb|ADCQ01000037.1| GENE 6 4765 - 5391 425 208 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 8 196 13 202 210 139 41.0 3e-33 MNRKIEKEIIRLVDDDEDQRRALRFLLEAAGYEVRDYPSGRDFLVNDEPSVPGCAILDLQ MPEMDGLTLLTIMREREYRVPVVFLSAHGDIPSTVEAMKKGSLDFLEKPVDSQKLCQLLS DILKKDRVTRKAGMEPEEAKKLFLKLSPRRQEIAKLISKGLLKREVAERLNINLKTVEAH CQFIYSQLNVHSVVELSSIICGAELSQD >gi|301349813|gb|ADCQ01000037.1| GENE 7 5375 - 5947 352 190 aa, chain - ## HITS:1 COG:VC1925 KEGG:ns NR:ns ## COG: VC1925 COG4191 # Protein_GI_number: 15641927 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating C4-dicarboxylate transport system # Organism: Vibrio cholerae # 72 182 481 589 597 71 34.0 7e-13 MEQGQISDIVYQIHKKTQGADEIIKKVRDFAKFGSRPVATELNQSVRKAIDVFLLSSQCP SVVEFKPSEAAWIKIDPFELELLVLNLLRNANEALVKTANARIEVNVSINKETSEVILTV KDNGPKLSEEALIKIKRGFETTKKNGTGMGLVIVSEIVSNAKGRIDFVPSKDRGLLVKIT FPLDTHEQKN Prediction of potential genes in microbial genomes Time: Fri May 13 06:14:56 2011 Seq name: gi|301349812|gb|ADCQ01000038.1| Burkholderiales bacterium 1_1_47 cont1.38, whole genome shotgun sequence Length of sequence - 31283 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 10, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 268 - 1236 289 ## Daro_2490 sensor histidine kinase - Prom 1327 - 1386 4.7 - Term 1333 - 1384 11.2 2 2 Op 1 . - CDS 1404 - 2921 1928 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 3 2 Op 2 . - CDS 3094 - 3276 134 ## gi|302859822|gb|EFL82900.1| hypothetical protein HMPREF0189_02201 - Term 4300 - 4344 7.0 4 3 Op 1 . - CDS 4366 - 4941 284 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 5 3 Op 2 . - CDS 4951 - 5301 338 ## lp_2789 transport protein - Prom 5326 - 5385 3.7 6 3 Op 3 . - CDS 5392 - 6372 431 ## COG0583 Transcriptional regulator - Prom 6474 - 6533 5.1 + Prom 6890 - 6949 2.3 7 4 Op 1 . + CDS 6987 - 7085 66 ## 8 4 Op 2 1/0.000 + CDS 7173 - 8531 630 ## COG0675 Transposase and inactivated derivatives 9 4 Op 3 . + CDS 8540 - 9874 1468 ## COG0477 Permeases of the major facilitator superfamily 10 4 Op 4 . + CDS 9948 - 11357 1438 ## COG0166 Glucose-6-phosphate isomerase + Term 11372 - 11421 9.5 - Term 11364 - 11402 6.9 11 5 Op 1 22/0.000 - CDS 11443 - 12552 613 ## COG0842 ABC-type multidrug transport system, permease component 12 5 Op 2 45/0.000 - CDS 12549 - 13667 306 ## COG0842 ABC-type multidrug transport system, permease component 13 5 Op 3 10/0.000 - CDS 13660 - 15423 1208 ## COG1131 ABC-type multidrug transport system, ATPase component 14 5 Op 4 . - CDS 15432 - 16418 857 ## COG0845 Membrane-fusion protein 15 6 Op 1 . - CDS 16544 - 17134 571 ## LSL_0023 hypothetical protein 16 6 Op 2 34/0.000 - CDS 17232 - 17957 359 ## PROTEIN SUPPORTED gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 17 6 Op 3 . - CDS 17961 - 18677 279 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 18 6 Op 4 . - CDS 18674 - 19297 411 ## Ddes_1472 hypothetical protein 19 6 Op 5 1/0.000 - CDS 19287 - 19889 363 ## COG0310 ABC-type Co2+ transport system, permease component 20 6 Op 6 . - CDS 19889 - 20653 728 ## COG5266 ABC-type Co2+ transport system, periplasmic component - Prom 20683 - 20742 3.0 - Term 20662 - 20690 -0.0 21 7 Op 1 . - CDS 20746 - 21648 752 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 21668 - 21727 2.2 22 7 Op 2 28/0.000 - CDS 21746 - 25420 2499 ## COG0419 ATPase involved in DNA repair 23 7 Op 3 . - CDS 25438 - 26655 710 ## COG0420 DNA repair exonuclease - Prom 26687 - 26746 2.6 - Term 26760 - 26793 2.1 24 8 Tu 1 . - CDS 26814 - 27563 308 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 27698 - 27757 3.2 - Term 27702 - 27747 10.1 25 9 Tu 1 . - CDS 27767 - 28759 644 ## COG1858 Cytochrome c peroxidase + Prom 29014 - 29073 2.9 26 10 Op 1 . + CDS 29103 - 30056 415 ## COG0583 Transcriptional regulator + Prom 30058 - 30117 2.1 27 10 Op 2 . + CDS 30140 - 30940 770 ## COG1712 Predicted dinucleotide-utilizing enzyme + Term 30958 - 30995 4.7 - 5S_RRNA 31092 - 31162 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349812|gb|ADCQ01000038.1| GENE 1 268 - 1236 289 322 aa, chain - ## HITS:1 COG:no KEGG:Daro_2490 NR:ns ## KEGG: Daro_2490 # Name: not_defined # Def: sensor histidine kinase # Organism: D.aromatica # Pathway: not_defined # 3 313 40 344 600 107 27.0 8e-22 MQSDEHLFHESIIENLEGALEKTLGAKTKVEISTDSPETIKTKLKEGRVELVFCNSVLYR ALLPYGVRDLATVHSDWNPNPNRADGAALIVKRDSEISSLNQRINLKEPKVAMEKNRHCD VLYYILGEFETLKLDSEKFKTFLLDNTGKSSELVKEVVQGKADAALLPACFLEQHVVEYP SLYREIKVLNPLRSSELPCTVSTTLYPNWSVLITPNISMKQATDIAATLLTQPKSSDGAW WSVSTQFDGVDKLLKNLKVEQYSYLREWTLRRFFEEYFPFIILFGAFLTGVILYSCIANR LIKIRTRQLSQSLLRLSCPRKS >gi|301349812|gb|ADCQ01000038.1| GENE 2 1404 - 2921 1928 505 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 11 502 18 477 484 180 32.0 6e-45 MNMNRRMFFKSMGAATVAAAPISSALANVVSPKKWDQTCEVLVIGAGAAGLFAAVSAKES GAKSVVLLEKAASPFLNSTSLSAGSVNATGTKAQFAAGVEDRSNAAEFAKEVEKTGKGLA DPQLVKLFAENSAMALDWLTDHGVVFTPQPNSAFRLKRMHGCDKHTGAQYVDVLFQNAKK IGVDIKLNTKVVELITNTEANEVLGVKAESKGKPLYVRATKGVVIATGGFCGDVNMIDKF ILDFRGALTFASANSEGQGLKMAEKIGAASTHMNFAAVYGYGVPMSKDKNNRKGWIFRGH VMNLYGPITVGPDGKRFVNDDLGATSISQAMSRLGFKKVFQVATEAQLLDFMKNDPIQVI GWDQNTFKKELEEQKVFVVKADTIAELAKKMGLPADQLEATVKRYNQFVKNGKDEDFGRK YMKGTFEKGPFYGFIGQPIAGISLGGLKVNKDLQVLDVYDQPIKHLYAAGEAIGGIHGGS YIGGNSVGSSLTLGMVAGKKAAASK >gi|301349812|gb|ADCQ01000038.1| GENE 3 3094 - 3276 134 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859822|gb|EFL82900.1| ## NR: gi|302859822|gb|EFL82900.1| hypothetical protein HMPREF0189_02201 [Burkholderiales bacterium 1_1_47] # 1 60 287 346 346 121 98.0 1e-26 MIRDRVSVLVWKTSIGSFVLAFDLTADGINGVYVDSAENYSLKEEVLFFRWVEASGRLLP >gi|301349812|gb|ADCQ01000038.1| GENE 4 4366 - 4941 284 191 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 10 171 138 299 306 116 37.0 3e-26 MKRQKIVPKEILAVIFAFVGVTLLITKGNFTSLSFSAMGIFWGLVSAGVGAFATIQPRRA IQKIGVTKVVSFGMFVGGILTCFMTPPWEISGHWTPMAIVAAVFVVVFGTVGAFWCYLRS TEFIPPALTSILASFEPLSAVVLCVLLLGTSFNYIECIGAALIISNLFILSIPNDKFRAF FPRFRRAGLEN >gi|301349812|gb|ADCQ01000038.1| GENE 5 4951 - 5301 338 116 aa, chain - ## HITS:1 COG:no KEGG:lp_2789 NR:ns ## KEGG: lp_2789 # Name: not_defined # Def: transport protein # Organism: L.plantarum # Pathway: not_defined # 1 116 1 117 308 65 35.0 7e-10 MPRSKTLTGIVLAVAAACFWGTMAVSGQYMITACGFNAEELTTVRIAGAGILMLVLGMLT EKNFFGSLRDLSVCRDVCFYGLCLFVIQYTFFLAIHACNAGTAAIMVGFGPIFIIL >gi|301349812|gb|ADCQ01000038.1| GENE 6 5392 - 6372 431 326 aa, chain - ## HITS:1 COG:VCA0635 KEGG:ns NR:ns ## COG: VCA0635 COG0583 # Protein_GI_number: 15601393 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Vibrio cholerae # 11 302 9 297 313 86 26.0 8e-17 MELDRIRAWQLFIETSRLGSLALAAEALSFPLPKASRLISSLEDELGFLLLDRTKKPAAL TKEGQALVLDAQGLISQWGILRERAEALRNGNFELSRRSLRISLPVNMDRSVFFEALQNL PIKHPGLQLEFCADVGQQALLEGKADIAWFGYKPEERGLVAIPMGYNVSFLVASAKYLKS HAEIRKVSDLINHPIIMRDTGNESFSQVLQCEYSNYEIGRDHKVLYGDSDACKKLLIEGK GIAIDMNPNFIAEELLDGTVQPVLPGWHRKPWALHICCRKSSSKDPIIREAMGIIRYLAL HQEPNDWKSWYRRLHLPEQMVLLPKV >gi|301349812|gb|ADCQ01000038.1| GENE 7 6987 - 7085 66 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVIFLPGTFQKIDSITPAHFRKNLFEPFQDR >gi|301349812|gb|ADCQ01000038.1| GENE 8 7173 - 8531 630 452 aa, chain + ## HITS:1 COG:alr7153 KEGG:ns NR:ns ## COG: alr7153 COG0675 # Protein_GI_number: 17233169 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 5 399 4 381 408 220 35.0 6e-57 MIQKVERHVIRKNNANWQACHKLCSLSRKLGNCAVYLLRHRFFEKAPVLTRKELDTELRH QYGSDYRAMPSAASAQRQGQVIAKQFKSFAKAAVEYSKHSEKFQGKPRLPGYRKKYRTFY VGRNGYQIRDGQLTITGGKDIGFSPIRVVCCERQELNAKAQEAVAGDLRIIPMGNTFIVE LTYRVGREESNNPKSVSLNPNEALCCDLGIDNFAAFVSTKPGVRPFLVKGKILKSINQRY NKQVAELKSKKHYEHIRIKGVKRYWQLQDLMHKASRLAVNFCLAHDLGRIVIGTNKNWKQ RVSLGRRNNQNFVMLPHAKFIEMVRYKAEEYGIQVTVREESYTSRASAMDFDEIPDFDPK GRNPTTSFSGRRLKRGLYQSSKRHLINADINGAANIGRKELGDEWLKKLLELDGGVFVDT PAVVRNLHASVGVRQSLKMGARSHETVHVSAR >gi|301349812|gb|ADCQ01000038.1| GENE 9 8540 - 9874 1468 444 aa, chain + ## HITS:1 COG:RSc1370 KEGG:ns NR:ns ## COG: RSc1370 COG0477 # Protein_GI_number: 17546089 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 11 444 1 438 438 430 62.0 1e-120 MQLFDNKRTTMTKGFYSIMLAQFLSSLADNALLIAAIALLTTLNEPAWMTPLLKLFFVVS YVIFAAWVGIFADSMPKGRVMFITNAVKTVGCIIMLFGTHPLLAYAIVGLGAAAYSPAKY GILTELLPPEKLVKANGWIEGLTVASIILGTGLGGLLISPMVDHFVQGHHVFGVHNAAQA AIAVMIFVYAAAAAVNLLIPDTGARYPKQDFRPIHTLVNFGKSCSLLWHDKLGQISLSVT TLFWGAGATLQFLVLAWANSNLGLDLSKAAILQGVVAIGIAIGAVLAAAYVSLRRSVDVL PIGVLMGFSVAVMSFYKASWIPGGFDIFGFHISFAIAIACLLLVSVGMMAGFFVVPMNAL LQHRGHVLMSAGRSIAVQNFNENSSILVMLGLYSLLIKSGLGTVTIMVLFGCFVGCSMLA VIFKHHHNQSKEDSLHLIGEDKRH >gi|301349812|gb|ADCQ01000038.1| GENE 10 9948 - 11357 1438 469 aa, chain + ## HITS:1 COG:PA4732 KEGG:ns NR:ns ## COG: PA4732 COG0166 # Protein_GI_number: 15599926 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Pseudomonas aeruginosa # 9 468 35 528 554 345 38.0 8e-95 MKSLTVTPFIRDSFENYQKSACGITLDIGRQRINQKELLSLIDFVKEKKMIESFNEMRKG KIVNASEHRSALHTSLRDPSPDAPHAAEVHQTLEAFCKFAEDVRNWKWRGCSGDRITDVI NIGIGGSDMGPKCVYNALRPNKPEIKLHFLASADGVIFDRITSVLDPFSTLIVISSKSFK TQETRANTQEILDWLKKAGIPEKDFKHHVVVVSAKPDAAEQFGLPKENFFPIWDWVGGRF SVWGAIGLPVAIALGADTFKRFLAGAHAMDQHASTAPLQNNLPALMAMFAYWNSEKLDVS SYCFLPYDERLRVMVDWLQQLEMESLGKSTAADGTPVIGKTSLAVWGGHGNESQHSFYQF LREGTAKNSIDVFWCEKPGHAHKELHRVLMANAKAQTEALVTRDPKSKYFNVVSTVSIEE LTPETLGALMAMYEHKTTMLGTLFGINAFDQPGVELGKKLANEAYKKIS >gi|301349812|gb|ADCQ01000038.1| GENE 11 11443 - 12552 613 369 aa, chain - ## HITS:1 COG:SMb21204 KEGG:ns NR:ns ## COG: SMb21204 COG0842 # Protein_GI_number: 16264618 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Sinorhizobium meliloti # 6 369 2 369 370 265 41.0 2e-70 MTFGEWLKWFGNLFVKEILTYFIDPASRFILIVPLIIQIFLFGYTATFDLNHAPIAVLNE SHGKYSQQLVAQVGASPTFYIRRYLQNASQMKDELNPRDSLAIVHIQSDFDSKLAQGKEG PVQIITDGRNSTTAGLAAAELSMIIQDFNHRYVGVPEGINVEMRAWYNPNLQTQWNIVTA LIGTLSFIQVLMLSALSVAREREYGTFDQLLVSPYRPFEILLAKATPPIFIGIAQTFIVV LFAVFWFDIPMRGSLLPLYFGIFIFTLSTVGTGLAISSISQTMQQAMIFSFVLIVPMVIL SGLVTPVYNMPEILQVLTYADPLRFALEYVHGVYLENLSISELWGQLLPMLITAVITLPF AAFFFRRSL >gi|301349812|gb|ADCQ01000038.1| GENE 12 12549 - 13667 306 372 aa, chain - ## HITS:1 COG:STM0816 KEGG:ns NR:ns ## COG: STM0816 COG0842 # Protein_GI_number: 16764179 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Salmonella typhimurium LT2 # 8 370 8 376 376 246 37.0 4e-65 MINSDFLRRLRALTIKEWCQLIRDPSSFAVGLVLPLVLIFIFGSGLSLDLGNTPIAVINQ APGQVSYAIEQGFKGSPYLTPIRCGNIKEAESLMRKKEVKGIVVIPSNFAGQFQAGKGKL QLVVHGVDTVSASSLERYIQQSVQLSLGKLGYSSEKGAVPVVRLWFNAANSSTWYFVPGL VVIVITIVGAFLTALVIAREWERGTMEMLFSTPVKPAEILLSKVIPYFIVGIGGLFLCLF AARFIFEVPIEGSLTVIIGSSCIYLLTALGAGLWISGITKNQFLASQLVIIISFLPSVML SGFVFDLRNVPSAISAVSYVLPPTYFMELIRASFLSGTDAVTVLKDVSILAGYAFLFFFF VTRALKKTLEKK >gi|301349812|gb|ADCQ01000038.1| GENE 13 13660 - 15423 1208 587 aa, chain - ## HITS:1 COG:ECs0872 KEGG:ns NR:ns ## COG: ECs0872 COG1131 # Protein_GI_number: 15830126 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Escherichia coli O157:H7 # 3 584 4 581 583 487 44.0 1e-137 MAENQNAPAVFAKSLKKVFANNKNPALDSVALNGIDLVVPKGGLVSLVGPDGAGKTTFMR LVCGLLIPTSGELEVFGMNTATDAEAIQKRIAYMPQRFGLYQDLSIKENMDLFANLQGVP EGERKDKYGQLLSMTDLAPFANRLAGKLSGGMKQKLALACALIHDPELLILDEPTAGVDP VSREELWKILKAAVAQKGMSVLVSTAYLDEAAMCHDVYIINKGVILAQGTPEALTEPYKN RVYFARADGRTPRQMLDLASHSSMILDSTPSGDGVRLLLKKDADLTEAAKELDIPELSPQ PPRLEDAFMSLLIAADKPQKDFGENAGIENTKIDDGKPVILVENLVKKFGNFVAVDDTSF SVKRGEIFGLLGPNGAGKTTTFRILCGLLPATSGKVEVAGFDLRTARASARRTVGYVAQF FSLYSIFSVGFNLKFYGGAYGLFGNKLKTAMDTVVRRFGLTGLISKKAGGLNDGYKKRLS MAAALMHNPDILFLDEPTSSIDPLARRVFWRSINRLADEGKAIIVTTHFMEEAEYCTRIA IQDRGHMLALGSPKEVKAVAGLPETANMNEAFIKIVKAYGEAGSADD >gi|301349812|gb|ADCQ01000038.1| GENE 14 15432 - 16418 857 328 aa, chain - ## HITS:1 COG:STM0818 KEGG:ns NR:ns ## COG: STM0818 COG0845 # Protein_GI_number: 16764181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Salmonella typhimurium LT2 # 1 327 1 324 331 198 41.0 1e-50 MKLKAVIAVSVLAIAAATGGWMYYRYESAPKNLELYGNVDIRQVNLAFLWPERIKSILVE EGDFVKAGQPVAEQETDILKIEIEQAKAAEQAAYQTYLALKNGSRPEDIAKAEAAVLVAQ SRLHLAQKDFERVDGIFKSTKGQGVSKQSLDTQSSQLQVAKNELFSAQKSLELAKIGPRA EDVARAYAQWQQTKAQVAQLELKLKQSTLYAPLDTTVRSRLLQPGDMASAQVPVLALAIN SPKWVRAYVNEVNLGKIKPGQQAYVTIDAYPNEKIPGHVGFISSVAEFTPKTVQTPDLRT NLVYEVRILVDDKENHLRLGMPATVSFE >gi|301349812|gb|ADCQ01000038.1| GENE 15 16544 - 17134 571 196 aa, chain - ## HITS:1 COG:no KEGG:LSL_0023 NR:ns ## KEGG: LSL_0023 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: not_defined # 4 136 3 136 186 79 35.0 8e-14 MTELKIEKVTEDSPLKAKVQRIYIKSFPLFERVSLEPFFNSVSDGVEIFALSDEEDVVAF FCTLRKGKYYYLFYLAVDEDKRGKGIGSDILSAVIKNADGATVFLDCEGIYPGCKDRAAR VKRLCFYHRNGFKEIGPLQTWRGEKFRTLVYGDKEISEQEIEDFWEIFGHLWEGQEIATI PAAPSSQDGKTAGKEL >gi|301349812|gb|ADCQ01000038.1| GENE 16 17232 - 17957 359 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145635097|ref|ZP_01790803.1| 50S ribosomal protein L25 [Haemophilus influenzae PittAA] # 3 208 1 205 205 142 36 2e-33 MSLLEIKNLNLTYPNGKKIFENAEITLQPGESQALWSPNGTGKTSLFRVVTGLLKPQTAD IFLEDKAVTNEEEFKALRLKVGFVLQHADDQLFFPQVIDDVAFGPLNQGLSEKEARKVSE EALSNLGILELKDALSYELSGGQKKLVTLACVLSMKPQVLLLDEPTNGLDVDSKQRLIEV INKIDAAKIIISHDPDMLSSTCTKFSTIRNCRIESIAKPEMHEHWHTHFYGGVPHTHHES T >gi|301349812|gb|ADCQ01000038.1| GENE 17 17961 - 18677 279 238 aa, chain - ## HITS:1 COG:BMEI0637 KEGG:ns NR:ns ## COG: BMEI0637 COG0619 # Protein_GI_number: 17986920 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Brucella melitensis # 11 228 24 243 254 86 24.0 5e-17 MTIKKDFSAASRIASALVFGVVVSVLPNITAALCALFFSFLIIFLFPTDAKHLIKRWLQI NLFILFIWLVTPWTTPGTPIGPGEIFSYEGVYLSALVTVKANALFFVFYALVSLLSFSRL AAGLKSLKFSESLIVILLFCARGIDIFESEYRRMKEAAKLRGFEMKANKRTYQTVAAVIA LLFVRAVRRNRVLDDAMKLRGFDGHIRTLNHEVWRYKDTFLLMLFCCASVVFAYLGWR >gi|301349812|gb|ADCQ01000038.1| GENE 18 18674 - 19297 411 207 aa, chain - ## HITS:1 COG:no KEGG:Ddes_1472 NR:ns ## KEGG: Ddes_1472 # Name: not_defined # Def: hypothetical protein # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 13 204 49 266 266 96 28.0 6e-19 MKNNSALFIASVFLLCSSTAANAHRLNVFAYSQAHEICVETSFQGGKPARGADVRVLTEE GAVFLTAKTEQDGKVCMALPDGFEPAPLTVIVNAGEGHQNQWKLSKEDFSLGADSKTAVS TVKLEILNKEAETNTASPKIYSQEELDAALKTAREQTEMQVIAPLRKQLAEAQQPKITWR DIVGGLGWCLGLGGLFAWISTRRQKNK >gi|301349812|gb|ADCQ01000038.1| GENE 19 19287 - 19889 363 200 aa, chain - ## HITS:1 COG:HI1621 KEGG:ns NR:ns ## COG: HI1621 COG0310 # Protein_GI_number: 16273510 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Co2+ transport system, permease component # Organism: Haemophilus influenzae # 1 198 1 200 206 108 40.0 7e-24 MHIAEGVLSAPVLITGAVVAAAGVAYGLKKIPANHFMLAGLLGAAFFVASLIHVPIGFSS AHLILNGLLGVVLGWAAFPVIFVALLLQAVLFQFGGFTVLGVNTATMGLGALAAYGIFYA IAGKSADKRLKFAGFCGGFSAVLISGILTALALAFTNEGFVTAAWLIFLSNLPVMVVEGV ITAFAVVYLKHSDPGIFNEK >gi|301349812|gb|ADCQ01000038.1| GENE 20 19889 - 20653 728 254 aa, chain - ## HITS:1 COG:BMEI0641 KEGG:ns NR:ns ## COG: BMEI0641 COG5266 # Protein_GI_number: 17986924 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Co2+ transport system, periplasmic component # Organism: Brucella melitensis # 7 247 8 247 252 210 45.0 3e-54 MNKTVIALALLSVCSLANAHFGSVIPNKQIVSDPKDSTLTITTAFNHPMEQTGMTMEKPK SFSVIVDGKKTDLTNTLQKTKVLDKDAWMTQYRVARPGCYKFVLEPQPYWEPAEDKFIIH YSKVMVPVFGVDDGWDAPTGAKTEILPLTRPFGNYAGNVFRGQVILNGKPAPDTMVEVEY YNVDHRVKAPDDIFITQQVKTDKNGIFSYAVPWEGWWGFAALNDADYKIKKDGQDKDVEL GAVLWTEFVNPSFK >gi|301349812|gb|ADCQ01000038.1| GENE 21 20746 - 21648 752 300 aa, chain - ## HITS:1 COG:ECs2077 KEGG:ns NR:ns ## COG: ECs2077 COG0697 # Protein_GI_number: 15831331 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 3 293 1 291 293 184 37.0 3e-46 MKISTNQATMIGCISPIFWGLSVSLVRTLSETLGVGKGLAINYLIALVFVFLLFGIPNLK AMPLKYYICGLGCAIGTSMTFAFSLGLAKDGTQTMEVGMINYLWPTLTILFAVLFNGQKA KWWVGIGMLLAIYGIFVVLSGNLLIDFKAMWSHIKSNPISYFLALWAAIFWAAYSNFTRA WAKGQNPTTLIFALDTIFFNAIWLLDLAPSYPWNTKGVLFAVGSALIMGSAYGMWTFGVQ KGRIEIMSIMSYFTPVLSCIFASLLIGAKLTHEFWVGVSIVVLGSFICWAATREKTRSSN >gi|301349812|gb|ADCQ01000038.1| GENE 22 21746 - 25420 2499 1224 aa, chain - ## HITS:1 COG:PA4282 KEGG:ns NR:ns ## COG: PA4282 COG0419 # Protein_GI_number: 15599478 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Pseudomonas aeruginosa # 1 1218 1 1211 1211 241 24.0 8e-63 MQILKLSFENINSLKGAWTIDFQAPDFRSGIFAIVGPTGSGKTTILDAICLALYGHTPRI GSITQNANEVMNRDSDSCRSSLEFQTLSGRYRATWSQKKQKNFDKTGKYGQVVSTMEKFG DGCWIPITEGSKVTSKKQEVQKIIGLSFDQFKRSVMLSQGDFAAFLKSKPNEKAQTLEQI TGTQVYSLLSTKIYVLAEQQKKLFADKQREVELSPVLDDAVVQTKQEQLKGITEEAKVLE TQINKIEKEIRWVSETAELRDQFLRVKDELERLKESRNEFFQKENDVRLAERAQKILPIF SSLRDKQSLREDAIKEKSSAENELVNATKSLKEKELNFKAAEEALNNENLQKPKKLALFS ETESLDVEISPLMKSSRRAQEEKTKLEKETAGCESRLNKAQEDIRKLEEDREKRDREKNE DIKGAFLYQRKDELRAGKITAETLSAALSDSEGKADKANETVKSQEKEAEALRIRKEKIA SGIEADEILLKETEERLNEILDGKTLDELMQEQLSFSEQIPLLDAVKSALKAACEQKEEI GRQEDVMQKDSVELTDWGSKKECYEREIRSLTSRLDELEALVQINELTKVRAELKEGEPC PVCGSLEHPFAANLPPEVATAKERLVGVKEELAGLQKNQKEADRKIDILKDRMLFSEKHL KDLRKNLDLAEEELKLKCDIAGLAREGVTEKAAAVLITKKESLLTDIKKRIVKARDAESN ATAAKEKIAGTKEELYRAEMAFSNAQTKVESGKSLLTQAQTGREKARTELEQFWRKTAKE YGSVITEEELFAHDPELFKRWIAKAAKYEELLESCREIENNLAIKKGALPGLIESVELLE KSTREKSEQAAELQAELKSKRLQRDKLFGTKLVEVERKTYEILLSQLAEAKDHAYEILSK ARSIQAAAGQRLKTAEQRAAEAERNLLSAKTDWTDALKKEKFESEEVWAKARLDSEAINA IHKEITDYQAQSRSAADRFSEADKKLVEKESQKLTDKSLEVLEAEKREVSARKEKLLEQK GELQKELKTDEEARHKRAGIEEDLKKLKHQVAVWERLNTMVGSSSGDKYRRYVQSLVLLT LIKNANVELTKLHSRYRLTKGEEDMELKVIDLDLADEERPTDNLSGGETFIVSLALALGL AQMASSNVRIDSLFLDEGFGTLDDDSLEKALNALSSLNAQGKTVGLISHVDQIKERIPSK IIVKRSAQPGVSRLEGAGVKHSWS >gi|301349812|gb|ADCQ01000038.1| GENE 23 25438 - 26655 710 405 aa, chain - ## HITS:1 COG:STM0396 KEGG:ns NR:ns ## COG: STM0396 COG0420 # Protein_GI_number: 16763776 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Salmonella typhimurium LT2 # 1 377 1 376 400 218 36.0 2e-56 MRLLHTSDWHLGKRLFDKERYDVFEKFLAWLLSTIRQERVDTLIVAGDIFDTAVPTNKSL RLYYDFLSQLTSSECRHVVIVSGNHDSPTLLEAPKGILENFGVHVIGGAESPEDEVIELK DKAGNLEGVVCAVPFLRERDILRLKDDSTLSRAEEIQLAVENHYKSVVKAAIDRMGAKRV PLIATGHLFTVGSPKGEDVNELYIGATGAVPVNIFPSEIDYLALGHIHRAYSIGGDKTRN YCGAPIPLTFEEANLEKLVRLVDFEPDEIKVADIQVPKFDRLVSVQGSQTEISTKLKELA GQDEKILVEVIHTGKANAINLTGEVSEQTSGTKIEVLRVFDETKKANCLANDGDEMEIGE LTWENVFEKKLKNETFEGEVSEEELWNAYRNAYFQISELADVNAQ >gi|301349812|gb|ADCQ01000038.1| GENE 24 26814 - 27563 308 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 244 2 239 245 123 34 2e-27 MLELQIKDLCVGYNGKEILHNISLDIENGSFIAIVGPSGAGKSTLLKQINRLDPGKTGGS ILWRGKDVDDYDVHELRRNLAYVFQKAVMFNGTTEENIKLSLKYGHEFKPDEIEALYQTV LEEASISQDILDTPAQDLSGGQQQRVGIARVLLMGSPVLLLDEPTASLDVETSNKFCQTL KQLKGGPAAKDGKKRTFLMITHRLEEAKFLADKILMIEAGHIVEYTDCETFFTHPQTQRA AEFLKAQAL >gi|301349812|gb|ADCQ01000038.1| GENE 25 27767 - 28759 644 330 aa, chain - ## HITS:1 COG:VC0089 KEGG:ns NR:ns ## COG: VC0089 COG1858 # Protein_GI_number: 15640121 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Vibrio cholerae # 24 327 28 332 333 389 61.0 1e-108 MRIQISVAAMLLSLSAVSQAAMFEPVPEPTIAPQDQAKVELGKMLWFDPRLSKSGFISCN SCHNLSTGGVDNLKTSVGHGWQQGPINSPTVLNAEKQIAQFWDGRAANLEEQAGGPIANP KEMASTHELAVQVIDSIPGYKPYFKKAFGTDKVTIKEITDALAAFEKTLTTPNSPFDRYL KGDKAALTPQQIKGFELFKTSGCTICHNGPLLGGSSYQKLGVVKPYQTTNTAQGRIEITK KDQDRMTFKVPQLRNIELTYPYFHDGEAKTLEDAVRIMGEVQLGKTYTPEQLADIVAWMK SLTGDQPKIVLPILPPNGKNTPQFDPWKKD >gi|301349812|gb|ADCQ01000038.1| GENE 26 29103 - 30056 415 317 aa, chain + ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 3 262 1 260 299 74 27.0 2e-13 MEMKSRAVKLFCAIAESGSLLAASNKLNLSSSAASRMLSQLEDRLGVKLFERGNKQLVLS EEGNNFYRVAHEAMKAWKVLEDYSAHQKAKRRLLRTAVMARHCSDVTLPAITKVLKRHEK VLKVTIDIHDSRDMYYSKYSHPFDIGFGTLLSDHDDLEKRIMARLPMRLVVSKQNPLSEK DKVAPADYKDEDFILLSHDMLERKLTDTLTPDLTEDQVVGEISSTQVALRMVKRNAGVHI TDLLAAISVSDDCKAIPIDVPLTIPFSVFWPKSEKELSDEAKECITEIAESIKKVGIPLT SFGKSFLSKSPSNQAIS >gi|301349812|gb|ADCQ01000038.1| GENE 27 30140 - 30940 770 266 aa, chain + ## HITS:1 COG:MTH973 KEGG:ns NR:ns ## COG: MTH973 COG1712 # Protein_GI_number: 15678991 # Func_class: R General function prediction only # Function: Predicted dinucleotide-utilizing enzyme # Organism: Methanothermobacter thermautotrophicus # 4 260 6 250 257 122 34.0 9e-28 MKKLAVLGCGAQSQIFCLNAPKHLGNDYFVTSVCAKNHEHAVELANRVGGRAAYTVDDML ELVPDIVVEFAGIEAVETYAEEILEAGADLIISSVGALDDEKFRDHLVRVARQYERKIYI TSGAIGGMDLMETYAVVGNPKVQIESIKPPESYIGTPYMEGKTVSETEEQLIFDGNVHDA IRGFPRNVNVSVATALATDAKDAKVRLISKPGITEVSHRITLSNDIMHSELFFVSQPDPE NKKNSKSAAYSVIALLKNLASPLTFF Prediction of potential genes in microbial genomes Time: Fri May 13 06:15:26 2011 Seq name: gi|301349811|gb|ADCQ01000039.1| Burkholderiales bacterium 1_1_47 cont1.39, whole genome shotgun sequence Length of sequence - 2140 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 101 - 176 86.8 # Asn GTT 0 0 - TRNA 238 - 313 86.8 # Asn GTT 0 0 - Term 432 - 477 7.1 1 1 Tu 1 . - CDS 497 - 1699 1595 ## COG1448 Aspartate/tyrosine/aromatic aminotransferase - Prom 1774 - 1833 6.0 Predicted protein(s) >gi|301349811|gb|ADCQ01000039.1| GENE 1 497 - 1699 1595 400 aa, chain - ## HITS:1 COG:RSc1010 KEGG:ns NR:ns ## COG: RSc1010 COG1448 # Protein_GI_number: 17545729 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Ralstonia solanacearum # 4 400 2 398 398 465 57.0 1e-131 MSKSIFDVVGQAPDDPILGLNEAFKSDPRDKKVNLSIGVYSTEDGKVPLLRVVAEAEKRI LEAGEPHTYLPISGIPAFNAGVQKLIFGADSPIIKEKHAVTVQSLGGTGALKVGADFLAA ILKDPEAVVSTPTWQNHVAIFEQAGFKVGKYPYYDKENNGVDFPAMLKSLSGLKENTVVI LHACCHNPTGYDLTQEQWAQVVDVCVKNKLIPFLDIAYQGFGDGLEEDAGSIRQFADAGI PFFVSSSFSKSFSLYGERIGALTVVCKDQEEASRVLSKLKALIRANYSNPPAHGAKIVAQ VLNDPELMKQWHEDLGEMRERIKEMRKDLASELKALGAKKDFDFVTQQKGMFSFSGLNPE QVQRLKDEFGVYIVKSGRMCVASLNKDNVKYTAEAIKEVL Prediction of potential genes in microbial genomes Time: Fri May 13 06:15:45 2011 Seq name: gi|301349810|gb|ADCQ01000040.1| Burkholderiales bacterium 1_1_47 cont1.40, whole genome shotgun sequence Length of sequence - 39187 bp Number of predicted genes - 39, with homology - 38 Number of transcription units - 14, operones - 9 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 20 - 286 110 ## gi|302858750|gb|EFL81841.1| putative ISCpe5, transposase - Term 176 - 214 0.3 2 2 Op 1 10/0.000 - CDS 340 - 1650 1474 ## COG0531 Amino acid transporters 3 2 Op 2 . - CDS 1718 - 3913 1863 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 3934 - 3993 3.5 + Prom 4763 - 4822 3.0 4 3 Tu 1 . + CDS 4844 - 6898 2189 ## COG0556 Helicase subunit of the DNA excision repair complex + Prom 6919 - 6978 3.1 5 4 Tu 1 . + CDS 7042 - 7539 514 ## COG0394 Protein-tyrosine-phosphatase + Term 7566 - 7594 1.0 + Prom 7575 - 7634 4.8 6 5 Op 1 13/0.000 + CDS 7654 - 8109 467 ## COG1959 Predicted transcriptional regulator 7 5 Op 2 20/0.000 + CDS 8145 - 9353 1445 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 8 5 Op 3 14/0.000 + CDS 9369 - 9764 569 ## COG0822 NifU homolog involved in Fe-S cluster formation 9 5 Op 4 10/0.000 + CDS 9764 - 10087 434 ## COG0316 Uncharacterized conserved protein 10 5 Op 5 11/0.000 + CDS 10104 - 10604 419 ## COG1076 DnaJ-domain-containing proteins 1 11 5 Op 6 13/0.000 + CDS 10604 - 12463 1822 ## COG0443 Molecular chaperone 12 5 Op 7 9/0.000 + CDS 12466 - 12804 432 ## COG0633 Ferredoxin 13 5 Op 8 . + CDS 12804 - 13004 302 ## COG2975 Uncharacterized protein conserved in bacteria + Term 13077 - 13112 5.1 14 6 Op 1 . - CDS 13008 - 13847 675 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 15 6 Op 2 1/0.000 - CDS 13853 - 15376 2241 ## COG1190 Lysyl-tRNA synthetase (class II) 16 6 Op 3 1/0.000 - CDS 15378 - 16145 775 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 17 6 Op 4 5/0.000 - CDS 16148 - 16990 964 ## COG1186 Protein chain release factor B 18 6 Op 5 . - CDS 17384 - 19102 1878 ## COG0608 Single-stranded DNA-specific exonuclease 19 6 Op 6 . - CDS 19119 - 20162 766 ## gi|302859479|gb|EFL82558.1| hypothetical protein HMPREF0189_01053 - Prom 20189 - 20248 4.9 + Prom 20149 - 20208 5.5 20 7 Op 1 23/0.000 + CDS 20229 - 21503 1269 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 21 7 Op 2 1/0.000 + CDS 21496 - 22185 314 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 22 7 Op 3 . + CDS 22186 - 22998 751 ## COG0084 Mg-dependent DNase + Prom 23054 - 23113 3.1 23 8 Op 1 . + CDS 23166 - 23747 570 ## Ddes_0621 amino acid-binding ACT domain protein 24 8 Op 2 . + CDS 23768 - 25141 1754 ## COG2848 Uncharacterized conserved protein 25 8 Op 3 3/0.000 + CDS 25157 - 25513 463 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 25570 - 25613 4.1 26 8 Op 4 . + CDS 25620 - 27731 2229 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases + Term 27821 - 27891 31.6 + TRNA 27799 - 27875 87.7 # Val GAC 0 0 + TRNA 27930 - 28006 86.9 # Val GAC 0 0 - Term 27915 - 27982 31.1 27 9 Op 1 . - CDS 28055 - 29020 1227 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 28 9 Op 2 . - CDS 29022 - 29453 444 ## Rmet_1454 hypothetical protein 29 9 Op 3 . - CDS 29467 - 30720 1466 ## COG2195 Di- and tripeptidases 30 9 Op 4 . - CDS 30774 - 30917 64 ## - Prom 31089 - 31148 2.1 + Prom 30713 - 30772 3.8 31 10 Tu 1 . + CDS 30898 - 31095 185 ## gi|302859490|gb|EFL82569.1| hypothetical protein HMPREF0189_01064 + Prom 31126 - 31185 2.7 32 11 Op 1 16/0.000 + CDS 31261 - 33186 2587 ## COG0441 Threonyl-tRNA synthetase 33 11 Op 2 . + CDS 33191 - 33724 568 ## PROTEIN SUPPORTED gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 34 12 Op 1 . + CDS 33864 - 34061 241 ## PROTEIN SUPPORTED gi|149926879|ref|ZP_01915138.1| ribosomal protein L35 35 12 Op 2 13/0.000 + CDS 34080 - 34436 477 ## PROTEIN SUPPORTED gi|187929054|ref|YP_001899541.1| ribosomal protein L20 + Term 34498 - 34542 8.2 + Prom 34440 - 34499 3.7 36 13 Op 1 40/0.000 + CDS 34564 - 35580 1267 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 37 13 Op 2 . + CDS 35598 - 38009 2408 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 38 13 Op 3 . + CDS 38019 - 38375 367 ## gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha) + Prom 38386 - 38445 2.6 39 14 Tu 1 . + CDS 38523 - 38807 232 ## gi|302859498|gb|EFL82577.1| bacterial transferase hexapeptide repeat protein + Term 38929 - 38958 1.2 + TRNA 38839 - 38915 81.0 # Pro GGG 0 0 Predicted protein(s) >gi|301349810|gb|ADCQ01000040.1| GENE 1 20 - 286 110 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858750|gb|EFL81841.1| ## NR: gi|302858750|gb|EFL81841.1| putative ISCpe5, transposase [Burkholderiales bacterium 1_1_47] # 1 88 462 549 549 169 100.0 4e-41 MAYTRFRRRKLAKVRLEFALTCLGLNIRKFLKFKKSGKLPTYWKVPEGLEAETFKKPSAK RIANRLKKRKNLQPNEIAKRGYRRKGMR >gi|301349810|gb|ADCQ01000040.1| GENE 2 340 - 1650 1474 436 aa, chain - ## HITS:1 COG:potE KEGG:ns NR:ns ## COG: potE COG0531 # Protein_GI_number: 16128668 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 431 1 432 439 549 67.0 1e-156 MSQQNRTKMSVTQLTLLTAINMMGSGIVMLPTKLAEIGTISILSWLITAVGSLCLAYAFA KCGMFSKRPGMGGYSEYAFGKAGNFMANYTYGVSLLFANIAIAITCVGYGAEFLEIELTP VQVCLSTIVVLWICTSANFMGASLTGKFSALAVWCVILPVLLLTVIGWFWFSPTMYVEAW NPHNEPFFSAVGASISMTLWAFLGLESACANSDAVDNPEKNVPIAVLAATIGVAIIYIVS TNIIAGIVPNAELVKSNAPFGLTFTMMFNSTIGKIVTFLLVLSCAGSTLGWQFTIAKVFQ QSAIDGFFPKCFAKVNKWKAPVLGMIIITAIQTGFCFMTISPELFKQFNRLVDLAVVTNI MPYLLSMAAVAVIMKVAKVEPSKAKLYNVIAIIGAIYSFYALFSTGITEVFYGSLATFLG WTLWGLIAPRFASNEA >gi|301349810|gb|ADCQ01000040.1| GENE 3 1718 - 3913 1863 731 aa, chain - ## HITS:1 COG:STM0701 KEGG:ns NR:ns ## COG: STM0701 COG1982 # Protein_GI_number: 16764071 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Salmonella typhimurium LT2 # 1 725 1 724 732 1067 67.0 0 MQKLKVAASALLKDKLQVEREVVCLSNADFTEVSAVVIDIEDYRKGGLNKVNATALEIPV FLYLRDEDTTPEELVGHVVGVINDDLTDRRLFGRQIDEAAKRYEDKLLPPFFGALAQYVY KGKSQFDCPGHQGGAYFRRHPAGRAFYDFFGEELFRSDLCNADVAMGDLLIHEGAPLTAQ KAAAKVFNADKTYFVLNGTSASNKVVLNAALTPGDLVLYDRNNHKSINHGALLQAGATPI YLETARNPFGFIGGIDEKCFDEEYLRSLVREKCPEKADAKRPFRLAVIQLGTYDGTIYNA RQVVDKIGHLCDYILFDSAWVGYEQFIPMMRDCSPLLLELGPEDPGIFVTQSVHKQQAGF SQTSQIHKKDSHIKGQDRYIPHKVLNNAFMMHASTSPFYPLFASLDVNAKMQEGEAGRRL WADCVKTVVDARKLLLETCHYIKPFIPSKVRGSDWKSYPTDLIAQDLEFFKFVPGQKWHS FEGYGENQYFVDPCKFMLTTPGIDVETGEYEDFGVPATILANYLRDNGIIPEKNDLNSIL FLMTPAENKEKMDHLVSQIARFEKYLDDDAPLEEVLPNLYKAYESRYRNYSIRQLCQEMH DFYKERNIKEIQKEMFRTEFMPKSVINPQEAHFAFLRGQAELVRLEDAEGRVAAEGALPY PPGVLCCFPGEVWGGPVLKYFLAWQEAMGRMPGFAPELQGVYVEDNGRGGKQVYCYVLKE DAVERLTAKGK >gi|301349810|gb|ADCQ01000040.1| GENE 4 4844 - 6898 2189 684 aa, chain + ## HITS:1 COG:RSc1011 KEGG:ns NR:ns ## COG: RSc1011 COG0556 # Protein_GI_number: 17545730 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Ralstonia solanacearum # 2 676 15 690 696 949 70.0 0 MKVIRFPNSPFELHQPFEAAGDQPQAIKELVEGIEDGLTAQTLLGVTGSGKTYTMANVIA RTGLPTLIMAPNKTLAAQLYAEMRDFFPNNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSA INEHIEQMRLSASKSVLERRDVIIVATVSAIYGIGKPESYTEMRLILKVGDKIEQRDLIS HLVRIQYERNDMEFTRGKFRVRGDTIDVFPAEHSEMALRIELFDDEIEAMYFFDPLTGKT RQKVDRFAIYPTSNYVTPRNDILRAIEAIKDELRDQETKFIESGKLLEAQRIRERTLFDL EMLHEVGFCKGIENYSRHLAGGLPGEPPPTLIDYLPKDALMFFDESHVLLGQIGGMYRGD SARKETLVTYGFRLPSAKDNRPLRFDEFESKMRRAIFVSATPADYELNHSSQIVEQVVRP TGLVDPEVEVRPATTQVDDVLGEIKERIPKGQRILITTLTKRMAEDLTDFLQDNGIKVRY LHSDIDTVERVEIIRDLRAGVFDVLIGINLLREGLDIPEVALIAILDADKEGFLRSERSL IQTIGRAARNVEGKAILYADTITDSMRRAMDETARRREKQTAYNVAHNITPKSVKKEIRD IIDGVYKSDNLENEFGLVDGQDYEKMGPKELAREIKRLENEMFEHAKNLEFEKASEVRDK LASIRKQVFGATPGKDEEGAKENV >gi|301349810|gb|ADCQ01000040.1| GENE 5 7042 - 7539 514 165 aa, chain + ## HITS:1 COG:PA2978 KEGG:ns NR:ns ## COG: PA2978 COG0394 # Protein_GI_number: 15598174 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Pseudomonas aeruginosa # 2 155 1 153 154 167 54.0 1e-41 MVKVLFVCMGNICRSPTAEAVFKKMVKEAGLTDKVIVDSAGTHGYHVGEAPDVRAQIAGR KRGYDLSELRARQITSDDFRECDFILAMDWENLTAMQQICPPMYKHKLALLMRYATEYDT AVVPDPYYGGNEGFNTVLDYCEDACEGLLEVVKKRASVYIPGSAL >gi|301349810|gb|ADCQ01000040.1| GENE 6 7654 - 8109 467 151 aa, chain + ## HITS:1 COG:RSc1018 KEGG:ns NR:ns ## COG: RSc1018 COG1959 # Protein_GI_number: 17545737 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Ralstonia solanacearum # 1 135 1 137 193 143 50.0 1e-34 MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG PAGGYRLAKPADQITVIDILEAVDDPLEKASCDKNRAVCDGEGECITFDLWESLNEEIRK FLKGISLKNLADKKKLKDRGLSPVSIIKPKV >gi|301349810|gb|ADCQ01000040.1| GENE 7 8145 - 9353 1445 402 aa, chain + ## HITS:1 COG:RSc1019 KEGG:ns NR:ns ## COG: RSc1019 COG1104 # Protein_GI_number: 17545738 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Ralstonia solanacearum # 3 402 6 405 405 606 71.0 1e-173 MKFPIYLDYSATTPVDPRVVDKMIPFLYENFGNAASTSHEYGWKAKEAVENARAEVAALI NADPKEIVWTSGATESDNLAIKGAARFHKDKGKHLITVKTEHKAVLDSMRELEREGFEVT YMDVGKDGLLDLDALAKAMRPDTTLVSVMAVNNEIGVIQDIERIGEMCRERGILFHVDAT QAAGKIPLDMEKLKVDLMSLSAHKLYGPKGMGALYVRRKPRARIEAIIHGGGHERGMRSG TLATHQIVGMGEAYRLCRLEMDEEMKRIGALRDRLWKGLSEIEAVHVNGSMEHRAPFNLN VSFAFVEGEALMASCPEIAVSSGSACTSASLEPSYVLRALGIDDELAHSSIRFSLGRFTT EEEIDYTVKLIKEKVAQLREMSPLWEMYKEGVDMKQVKWTEH >gi|301349810|gb|ADCQ01000040.1| GENE 8 9369 - 9764 569 131 aa, chain + ## HITS:1 COG:PA3813 KEGG:ns NR:ns ## COG: PA3813 COG0822 # Protein_GI_number: 15599008 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Pseudomonas aeruginosa # 1 126 1 126 128 194 76.0 3e-50 MQYSDKVMDHFQHPRNVGRLDKNDPNVGTGTRGAPACGDVLSLQIKVNDNGVIEDAKFKT YGCTSAIASSSLVTELIKGKTLEEAEQLKNTAIAEELELPPVKIHCSILAEDAIKAAVED YRQKQAQIKDK >gi|301349810|gb|ADCQ01000040.1| GENE 9 9764 - 10087 434 107 aa, chain + ## HITS:1 COG:RSc1021 KEGG:ns NR:ns ## COG: RSc1021 COG0316 # Protein_GI_number: 17545740 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 3 107 2 106 106 162 72.0 2e-40 MSVTLTEKAASHVEEFLRKRGKGVGLRVGVKTSGCSGMAYALEFADKIEPEDQVYESYGI KVIVDPKSLPYINGTELDFVREGLNTGFKFKNPNEKESCGCGKSFHV >gi|301349810|gb|ADCQ01000040.1| GENE 10 10104 - 10604 419 166 aa, chain + ## HITS:1 COG:RSc1023 KEGG:ns NR:ns ## COG: RSc1023 COG1076 # Protein_GI_number: 17545742 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Ralstonia solanacearum # 7 160 9 162 176 95 36.0 4e-20 MAAMNPFEIFGLKPQFRIDKQKLDEKYFEIQKKVHPDRFASASDTEKRVAQQWATLINDA FQKLSDPIQRGKALCALRGHLIDEDSSGSISEEFLLEQLERREAISDAKDSGNTAELEVL KKAIEKEKDELLNEVADAFDVKSDVSLAAEDLKKVMFLNRQLLDFE >gi|301349810|gb|ADCQ01000040.1| GENE 11 10604 - 12463 1822 619 aa, chain + ## HITS:1 COG:RSc1024 KEGG:ns NR:ns ## COG: RSc1024 COG0443 # Protein_GI_number: 17545743 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Ralstonia solanacearum # 1 619 1 620 621 724 62.0 0 MSLLQIAEPGMSTAPHEERFAVGIDLGTTNSLAATVRNGSPEVLVDEKNQKLLPSVVHYE KNGCVVVGEEARSRAEADPLNTISSVKRLMGRSASELQNNRYMPYDFIKGEGMVKLNTAQ GAKSPVEVSAEILKVLKKRAEDALGGELVGAVVTVPAYFDDAQRQATKDAAKLAGLNVLR LLSEPTAAALAYGLDTGAEGLYIVYDLGGGTFDVSVLRLRKGVFEVLATGGNSQLGGDDF DQRLYCWVIDQAGRPLLTHSDSRMLMAKAKAAKETLTTEKKATIHAKISGDRIINVTITR EVFDSITHHLVARTIEATKQTLKDAGLKRNEVKGVVLVGGSTRMPCIRKAVADYFDREPL TDIDPDEVVAIGAALQANLLAGNRSDEDWLLLDVTPLSLGLETMGGLVEKVIPRNTPIPV AMAQDFTTFKDGQTAMSIHVLQGERDLVEECRSLAKFSLRGIPPKVAGAARIRVTFQVDA DGLLSVTAREQTTGVEASVTVKPSYGLSEDEISRMLEDSFGHAEEDMKLRELREQKVEAA RLLESIYSALSSDADLLNEAERAQIDAMIQHLETVRAQDDKDEIKNSISALSEGTKDFAA RRMNRTILEALQGKSVDEV >gi|301349810|gb|ADCQ01000040.1| GENE 12 12466 - 12804 432 112 aa, chain + ## HITS:1 COG:PM0323 KEGG:ns NR:ns ## COG: PM0323 COG0633 # Protein_GI_number: 15602188 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Pasteurella multocida # 1 110 1 110 111 135 60.0 3e-32 MPKVTVLPHPGICPNGAEFEVPEGANLAKALVANGVNIDHACEFSCACTTCHCYIDKGFD SLEPAEDDEEDLLDQAWGLKSNSRLTCQTKVGKEDITVEIPKYSRNHARENE >gi|301349810|gb|ADCQ01000040.1| GENE 13 12804 - 13004 302 66 aa, chain + ## HITS:1 COG:ECs3390 KEGG:ns NR:ns ## COG: ECs3390 COG2975 # Protein_GI_number: 15832644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 66 1 66 66 67 60.0 6e-12 MKLTWKDPRAIAEELYDENPDLDLLTISFEKMHAMIVALPDFDDDPEASNEKILEAILVA WMDERD >gi|301349810|gb|ADCQ01000040.1| GENE 14 13008 - 13847 675 279 aa, chain - ## HITS:1 COG:NMA0394 KEGG:ns NR:ns ## COG: NMA0394 COG0494 # Protein_GI_number: 15793402 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Neisseria meningitidis Z2491 # 30 272 35 277 291 104 31.0 2e-22 MSERKLKIAALLKELYDMAEVPVPSSRIPFYFNDVRAGHIERTDAEFLASTFRFCDVRPD AFVFTAEDSGQASRRLAAISHLYKGTDKVFAWRDELLSVTASDDIACESPLTVIERAMCR PFAFNTFAVHLNPFTRDGRMWVAQRSFKKAIGPGYWDNCAAGLVGAGEPFGLAMEREAFE EAGVTPGSLEISFSARNIISRPVHEGWMREIAYICNAYVEDSFHPHNMDGEVERFELLEP EAIIERIEKGRFTFESSLAVLAGLAWQEGLLDLLDQPAV >gi|301349810|gb|ADCQ01000040.1| GENE 15 13853 - 15376 2241 507 aa, chain - ## HITS:1 COG:RSc1028 KEGG:ns NR:ns ## COG: RSc1028 COG1190 # Protein_GI_number: 17545747 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Ralstonia solanacearum # 15 506 15 509 510 642 63.0 0 MENQKETVKKEDVLETENHIIAERLAKLDKLRAEGVAYPNDFVQKDRIEEVRAANGSKTP EELEAAPVEVTVAGRVMLKRVMGKASFLTVKDGTDHIQFFITKAEVDDETYDFFKKMVDI GDIVGATGTLFFTKTGELSVRVKNFRLLTKNIRPLPDKFHGLSDPETRYRQRYVDLIMNE STRRTFMIRSKAIAETRKFMMEHHFMEVETPMLHPIPGGANAKPFITHHNALDMDMYLRI APELYLKRLVVGGFERVFELNRSFRNEGVDVRHNPEFTMMEFYAAYKEYHWLMDYTEKLL RTVAEKTIGTAVIQYQGHTIDLTKPFDRLTAKEAVLKYAPQYTPEQLEDKDFMQEELKRL GEPAKADAGVGALQMAIFEAVAESKLIQPTYIIDYPVEISPLARASDKVPGITERFELFM AGRETANGFSELNDPQDQAARFMAQAKLKASGDDEAMYYDADYVRALEYGLPPTGGCGVG LDRFVMLLTDSPSIRDVLLFPHMRPEA >gi|301349810|gb|ADCQ01000040.1| GENE 16 15378 - 16145 775 255 aa, chain - ## HITS:1 COG:RSc1029 KEGG:ns NR:ns ## COG: RSc1029 COG1028 # Protein_GI_number: 17545748 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Ralstonia solanacearum # 3 252 5 246 246 150 37.0 2e-36 MKTLTIITGASKGLGFELTRQSLKAGDTVVTMERRPSKALVEEADKIGCNFIQFTADLLD RKGAVELLMWLLSDKEYAEHDRLILINNAGVLGPVGPIENASPQVAVDCIRVNFEIPVLL TQAFLNETRSWKGERRVMNISSGAGRKSVPGWAMYCSTKAALDRFTAVTAEDQLGKPNPA RLSAVAPGVVNTGMQGSIRASSKEDFPNVDRFIDLEKDGKLQSPEDTAKRLLNYLNSDEF GKEPISDIRNISVGD >gi|301349810|gb|ADCQ01000040.1| GENE 17 16148 - 16990 964 280 aa, chain - ## HITS:1 COG:RSc1030 KEGG:ns NR:ns ## COG: RSc1030 COG1186 # Protein_GI_number: 17545749 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Ralstonia solanacearum # 1 280 21 300 300 391 70.0 1e-109 MAKEEDDDASLEAVEADINNLKKEVEHLEFQRMFNQEHDEANCFLEIQAGAGGTEAQDWA SMLERMYIKFAERQSFKPEIVEETEGDVAGIKGCTIKITGDYAYGWLRTETGIHRLVRKS PFDSNARRHTSFASVFVVPEVDDSFEIEVNPADLRIDTFRASGAGGQHIQKTDSAVRITH IPTGIVAVSQTSRSQHQNKEEAMTILKSRLYEAELRKRQATQQALEDNKSDISWGHQIRS YVLDQSRVKDLRTNVETGNTTAVLDGALESFIEASLKQGV >gi|301349810|gb|ADCQ01000040.1| GENE 18 17384 - 19102 1878 572 aa, chain - ## HITS:1 COG:RSc1115 KEGG:ns NR:ns ## COG: RSc1115 COG0608 # Protein_GI_number: 17545834 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Ralstonia solanacearum # 1 561 1 562 565 528 50.0 1e-150 MTKITIRRFDRNVVQALTNRGFPEPLARALAARHVTSPSDLDYEFKEMLSPWDLKNCREA GEAIADAIWKQKKIVIIGDYDCDGATAVSVGILGLQALGAFNVSYLIPDRDKDGYGLSPQ LVDRAAAAGAELIITVDNGISSVAAVEHAKTLGIEAVVTDHHLPGDEIPDTLVVNPNQRG DTFPSKSLAGVGVIFYVLIAVRSALRAKGAYPNGKQPNLQHLIDLVALGTVADVVPLDRN NRILVSKGLDSIRAGKMQPGVSALLSVAGKNAHRISANDLGYILGPRINAAGRLDSINKG VECLTSYDYNTALFYAKELDQINAERRNREVSMQSDAILSLQTISVDDSNSIVLKGDDWH AGIIGLVASRIKEQTYRPVIAFAPSEENGEHVLKGSGRSIPGIHLRDALDRVSKLSPGLI LKFGGHAMAAGLTIRKDAFDEFKELFARAVKELSDPEMFERNIVTDGELRASDFNIELVE AIRKHVWGQAFPEPLFANQFKVLSQRVLKDQHLKLSLEVDGREIQAIWFRHKRELPPTVR LAYKLDINDFRGRQSVQLIIEGMEDEFEDWTA >gi|301349810|gb|ADCQ01000040.1| GENE 19 19119 - 20162 766 347 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859479|gb|EFL82558.1| ## NR: gi|302859479|gb|EFL82558.1| hypothetical protein HMPREF0189_01053 [Burkholderiales bacterium 1_1_47] # 1 347 1 347 347 692 100.0 0 MPACIFLLPNSLPSPNEIKALGKDAYPPVLRNFLEGFGEPKVATIFENPALSGFASMQWV WMLLTQRENLAPSAPYLWKGLGGPKVHQEFWALNGYRKENGVLKSAGDVFDIDEECDLRD LLNPIARQFNFEVQVLDGRFFLARKKAWQVLITPWLAQEDKPAAQPAGPEAAEWTEITRV IEESLAKSVFNEYRAKAGRPPVEGFWINGGAFEEQLLPYTQIRCALTSDPTIRGISEAAG IARAYIKSSTAVWPDCPEGDRLCILDDFNDPSVKTDPARWSAAWIRAVKRMEHLTATAKG FEKYHPRLVASDGLRVSVIEKLQEQKSSFAFWKSPKNYTEAWLNSGR >gi|301349810|gb|ADCQ01000040.1| GENE 20 20229 - 21503 1269 424 aa, chain + ## HITS:1 COG:RSc1117 KEGG:ns NR:ns ## COG: RSc1117 COG4591 # Protein_GI_number: 17545836 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Ralstonia solanacearum # 9 424 3 416 416 477 58.0 1e-134 MKNKPLSGLPFEWMIGLRYTLSRRKGRSDGFVSFISAMSMASIALGVMALIIVLSVMNGF QKEVRDKMLSVLSHAEVLSIGAPIPDWQKTAAELKKQQPEIIGAAPFLRGQGLLTSGTNV RGVQLNGIDPETESQVSDVAKNMKIGRLSDLKPGEFKIILGTDLARMLGVIPGEKVNVMV PQGQFTPAGTMPRMRQFTVAGVFNSGHYEFDSAMSFINLTDAEKLMRTQTPGGIRLKLSN MQDAPRVAAELNNQMPPGLLATDWSRQNRTWFAAVQVEKRMMGIILFLIVLVGAFGLVSS LVMTVNSKRSDIAILRTQGATRGSIMRIFMVQGAFIGTAGVLIGVGVGLLIACNVGSIVG AIEQLFGVQFLPKEIYFISAMPSDPRASDVIPIAVFSFLLALAATVYPSWRAANIQPAEA LRYE >gi|301349810|gb|ADCQ01000040.1| GENE 21 21496 - 22185 314 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 25 205 20 199 223 125 38 4e-28 MNNNVVLKAVGLQKSYKEGGRLLHVLKDVNLEVHEGESVAIVGTSGSGKTTLLQCIGGLD RFDKGLIEIGGENIAELSEQRLTELRNRKLGFVYQFHHLLPEFTAMENVAMPLKIRREKA SVAQKRAESLLKAMGLADRVDHLPSQLSGGERQRVAIARAVSGSPLCLLADEPTGNLDGE TAEVVIDYLLKLSSSQGLALVIVTHDPDIAARCDRVVRLKNGCILPEEN >gi|301349810|gb|ADCQ01000040.1| GENE 22 22186 - 22998 751 270 aa, chain + ## HITS:1 COG:RSc1119 KEGG:ns NR:ns ## COG: RSc1119 COG0084 # Protein_GI_number: 17545838 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Ralstonia solanacearum # 4 269 2 271 271 152 35.0 8e-37 MLRWIDTHNHLFVLPEEQQKKEVSEARKVGVVSSLVCASGVSNLEEARRCAYEYDQAYAC GIHPLYIGYSWKEDLTALEAFLEEHREDPRLAAVGECGLDFSAACSVPHDVQEEVFSTQL KLARKYGLPLSLHGREAMDIVLKYIRRLPPQLGIIHAFNGSMAQAQVFLQNGFKLGYGGA VSYDGSKRIRKILSELPDDAWVLETDCPDMPPSWVREENKENPESALADTACYGAVAAEL RNTTIEEISEQSIQNTLKAIPKFGVLISAS >gi|301349810|gb|ADCQ01000040.1| GENE 23 23166 - 23747 570 193 aa, chain + ## HITS:1 COG:no KEGG:Ddes_0621 NR:ns ## KEGG: Ddes_0621 # Name: not_defined # Def: amino acid-binding ACT domain protein # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 1 191 1 185 187 112 36.0 9e-24 MKRILVAVTGPDSFGVVYTTSDTLNKLGCSIIDMDQTTVRNEYSAIMIVDKPESVGDDEV AKIIKEALRGKGFDMSVLVRDYVPGEATVTQGEPFVLTVDGTDSRDILTAFTRVFYEGRI NIDSFRTIEVKLDDAGNPLPQPRVLLVFEVTVPPEVDRKALSRTLSDIAHDRHLSMSMQH RRIFEAVHRVSIA >gi|301349810|gb|ADCQ01000040.1| GENE 24 23768 - 25141 1754 457 aa, chain + ## HITS:1 COG:MA1691 KEGG:ns NR:ns ## COG: MA1691 COG2848 # Protein_GI_number: 20090543 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 3 457 15 464 464 486 56.0 1e-137 MLTEREVISTLDMLRSEHLDVRTVTLGLNLFDCASDNFETFAYRVRSKINRHAKNLVAIC NEVGDRYGIPVVNKRITVSPIGTVCAGYSRDQMVKVCKLLDDCATDAGVDFLGGFGALVE KGITPGERNLIDALPEALATTNHVCSSINVGRTRTGINMDAVKLMGHRVLDVAAATADRD GLGCCKLVVFCNIPEDVPFMAGGYLGVGEADAVISVGVSGPGVVKKAIDRAVRRRGEQVS ITEIAEIIKTTAFKVTKVGQLIGTEVAEKMNLPFGVADLSLAPTPEVGDSVGEIFQSVGL SSIGAPGSTAVLAMLNDAVKKGGVFASSSVGGLSGAFIPVSEDAAIADAAAKGLLTLEKL EAMTCVCSVGLDMIAIPGDTPADVISAIIADESAIGMINAKTTAVRLIPVPGKTVGERAE FGGLLGGADIMAVQKGSAAGFINRGGRIPAPIHSFKN >gi|301349810|gb|ADCQ01000040.1| GENE 25 25157 - 25513 463 118 aa, chain + ## HITS:1 COG:AGc3864 KEGG:ns NR:ns ## COG: AGc3864 COG0251 # Protein_GI_number: 15889411 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 116 14 124 124 102 46.0 2e-22 MPEIKRIEPGRRFSEAVVCDGVVYISGQVDLARNRDPKVQTAEVLKTIDDLLAKAGSDKE HILRCTVYLSNMGYFSEMNQAWEEWVSKTNPPARSVLESALPDPSWKVQISTVAVVVD >gi|301349810|gb|ADCQ01000040.1| GENE 26 25620 - 27731 2229 703 aa, chain + ## HITS:1 COG:RSc1576 KEGG:ns NR:ns ## COG: RSc1576 COG0317 # Protein_GI_number: 17546295 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Ralstonia solanacearum # 24 702 39 745 746 664 50.0 0 MEESAPTLNLADVRRIIEPLYEGQKLFTGESVMAHAEGVVDILRGIRDDDDLLAAAYLFC VWNQLKNPKEWLTKHFGRQVCELVANLKVVIDVSEKARSREGEARISQQPDAVRRLLLAL CTDLRVVLLRLASRLQTLRYFAATKAPGAKEYGAETLALYAPLANRLGIWQMKWELEDLS LRFTEPEVFHTIANNLEETREERVASIQEAVRRIQALLASRGIQASVSGRPKHIYSIWKK MCKKNLKFEQLFDVRAIRIIVDSVEKCYETLSLIQESFEVLSKEFDDYIAKPKPNGYQSL HTVIVGSRGKPLEIQIRTRAMHEFAELGVAAHWRYKEGSKRKAGEHEEDRVAWLRQMLAW KSDVQAAPTPEAAKDEHIYVLTPQGKVLDLPAGSTPIDFAYLLHTELGHRCRGAKVDGVM VPLNTKLQSGQTVEIIAAKVGAPSRDWLNPDLGFTASPRSRTKVRQWFNAQEMEQALTAG REKIDKDLARLGKTAVKLEDLAKRLGFNTVDDLCLAAGKDELGQKAIENVLAPRPQKNPQ EEEKLEPAAPKKTSEHEKGKILVVGVDSLLTQLARCCHPVPPDEIVGFVTRGRGVTVHRA DCPNIRSLDEEGRDRLIEVSWTQDESSVFPVQILVIAADRMGLLKDISEILSREKQSISA MQTVRVKGDVHMTFTIEIHGKDDLNRTLAAIREVKGVFSARRT >gi|301349810|gb|ADCQ01000040.1| GENE 27 28055 - 29020 1227 321 aa, chain - ## HITS:1 COG:RSc1423 KEGG:ns NR:ns ## COG: RSc1423 COG0330 # Protein_GI_number: 17546142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Ralstonia solanacearum # 12 307 9 304 308 362 65.0 1e-100 MEAIGGFAVFIMVLAVFAVIFIAKSVRVVPQQEAWVVERFGKFHTVLQPGLNFIIPIIDR VAYRQTLKEIPMDTSSQICITKDNTQLQVDGVLYFQVTNPELASYGTSDFVMAITQLAQT SLRSVIGTMSLDKTFEEREEINARVVQAVDEAAQTWGVKVLRYEIKDLTPPKEILRAMQL QITAEREKRAVIATSEGQKQKEINIAEGERAAMIAQSEGEKQAAINKAEGEARAIEAVAK AQAEAIRAVAQAISQPQGMQAVNLQVAEKYVEAFGKIAKEGNTLLLPANLADMGSMVASA MTIIREQNGKPAAAPAIPKVE >gi|301349810|gb|ADCQ01000040.1| GENE 28 29022 - 29453 444 143 aa, chain - ## HITS:1 COG:no KEGG:Rmet_1454 NR:ns ## KEGG: Rmet_1454 # Name: not_defined # Def: hypothetical protein # Organism: R.metallidurans # Pathway: not_defined # 6 137 5 138 144 74 36.0 1e-12 MFSMIYLWLIGAVVLAGADILLGTIYLLIIAAAALAAFIFALIGAGILFQLLAFAVFAIA GCVYLSYRKRKNSVSTDADHLQHINDGHSVEVKEWKKNGKARVFYRGTVWDAKPEKGSPM VPGLWEIVGMSGNTLIIKLKQEK >gi|301349810|gb|ADCQ01000040.1| GENE 29 29467 - 30720 1466 417 aa, chain - ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 15 386 16 388 412 176 31.0 7e-44 MEHFSPKIVEAVETVKTSPSVQRAFDYVKDHLEETIRDQKELVLIEAPTGHEKAKAERYL SMLREAGLDDIYMDEHFNVIGKLHGTGNTGCSVLLEGHLDTVFSFGDVKGIETDAEGRIH CPGICDDTRAIAANLAVLRAFKAANLRPVHDIYFCGTVCEEGLGGMKGMAWTLDQLKDKT NLLATISIDGATAEIFYANATGMIDLEVTIEGPGGHAWTACERVSAIHTAGLAIAEIAKI VPPKDPKTTLTVSLIEGGQAIHAIAQKAVFKINARSNSQAALNEIEEQIYHAIRRGVEIE QKKEGGEGELSLSIEKTLDVPAGSQPDDAAIIQLAKLATQAVGRNYKFLPGGCTNTNMSI ERGIPAVTLGRGGEEYGTHTLKEWFNPKGVYACEQKSILMLSVLAGLDGVIAPLDKA >gi|301349810|gb|ADCQ01000040.1| GENE 30 30774 - 30917 64 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTQANTTPRKLGTLFRKKRPDRIPMQNDRISVKNEISTFAPYAIFLI >gi|301349810|gb|ADCQ01000040.1| GENE 31 30898 - 31095 185 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859490|gb|EFL82569.1| ## NR: gi|302859490|gb|EFL82569.1| hypothetical protein HMPREF0189_01064 [Burkholderiales bacterium 1_1_47] # 1 65 32 96 96 102 98.0 7e-21 MVLACVIGAFIGILATYIILKFLLWIEVIGSVNTDWFIRQCIWLTVLSVFGVILSGKAFK DKPTK >gi|301349810|gb|ADCQ01000040.1| GENE 32 31261 - 33186 2587 641 aa, chain + ## HITS:1 COG:RSc1577 KEGG:ns NR:ns ## COG: RSc1577 COG0441 # Protein_GI_number: 17546296 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 634 1 634 635 869 65.0 0 MIEVTLPDGSKREFDSPVTVGDVAASIGAGLARAALAGKVNGKLVDLSHPITENSTVSIV TDKDPEGLEIIRHSTSHLMAQAVKELYPEAQITIGPVIENGFYYDFSLPKHLTNEDLPLI EKKMDEIVKRDLPIVREEMDRDEAVKYFNSIGEHYKAEIIGSIPAGETISLYRQGDYVDL CRGPHVPSTGRLKVHKLMKLAGAYWRGDSKNEMLQRIYGTAWAKKDDMAAYLHMLEEAEK RDHRRLGKELDLFHFQEEAPGLIFWHARGWALWQQVEQYMRRVYQDNDYQEVKAPQLLDR SLWEKSGHWSKYKENMFTTESENRYYALKPMNCPGHIQIFNSAVRSYRDLPIRYGEFGAC HRNEPSGSLHGLMRVRGFTQDDGHIFCTEDQILSECTAYTKLVQKVYADYGFTDISYKIA TRPEKRIGDDATWDKAEKALMDALDASGIKYDILPGEGAFYGPKIEYHLRDSLGRGWQCG TIQVDFQMPARLGAEYVTESNGRATPVMLHRAIVGSLERFIGMLLEHYAGQLPPWLAPVQ VAVANITDDQADYAKEVVSMLKKAGLRAEADLRNGKITYKIRELSLQKLPYILVVGAKEK AEGKVAVRVRGGKDLGAMSVEDFIKLVQEDVATRRNVNEIE >gi|301349810|gb|ADCQ01000040.1| GENE 33 33191 - 33724 568 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163801060|ref|ZP_02194960.1| 50S ribosomal protein L35 [Vibrio campbellii AND4] # 13 176 1 166 166 223 66 1e-57 METKIAQERTHRINGEIRVPEVRLTGLDGEMIGIVRTSQALAMAEEADVDLVEVAPNARP PVCRLMDYGKFRYQEQKKAQEQKAKQKVIQVKEVKFRPQTDKNDYDTKLRALTRFLADGN KAKVTLRYRGREMAHQEFGTDLLNKVKEDLADIAQVESFPKLEGRQMIMVLAPKKKK >gi|301349810|gb|ADCQ01000040.1| GENE 34 33864 - 34061 241 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149926879|ref|ZP_01915138.1| ribosomal protein L35 [Limnobacter sp. MED105] # 1 65 1 65 65 97 75 1e-19 MPKMKTKKAASKRFKVRSGGSIKRAHATKRHILTKRTTKNKRHLRGMLTISESDKKEIRA MMPYA >gi|301349810|gb|ADCQ01000040.1| GENE 35 34080 - 34436 477 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|187929054|ref|YP_001899541.1| ribosomal protein L20 [Ralstonia pickettii 12J] # 1 118 1 118 118 188 79 5e-47 MPRVKRGVTARARHKKVFALSKGFTLRRNNVYRVAKQAVMRAGQYAYRDRRNKKRVFRRL WIARINAGARANGMNYSQFMNGLKKAGIELDRKVLSNMAIFDKEGFAAVVAKAKASLA >gi|301349810|gb|ADCQ01000040.1| GENE 36 34564 - 35580 1267 338 aa, chain + ## HITS:1 COG:RSc1581 KEGG:ns NR:ns ## COG: RSc1581 COG0016 # Protein_GI_number: 17546300 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Ralstonia solanacearum # 3 337 4 343 344 478 67.0 1e-134 MEDLSLIIQSAKEAFDQAATPAALEDAKAVYLGKNGSLTALLKGMAKLSIEEKRARGAEI NKAKREVETLLNNRREALAREELNRKLTSESVDITLPGRTFGYGGIHPVMRTWMRVEEIF KTIGFDVADGPEVENDWYTFTALNNPPNHPARSMQDTFYVDMKDETGKQLPLRPHTSPMQ VRYARQHKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYVDFLKRF FETDDLIVRFRPSYFPFTEPSAEVDMMFTSGPRKGKWLEISGSGEVHPNVVRNFGLDPER YIGFAFGSGLERLTMLRYGIDDLRLFFEGDLRFLKQFN >gi|301349810|gb|ADCQ01000040.1| GENE 37 35598 - 38009 2408 803 aa, chain + ## HITS:1 COG:RSc1582_2 KEGG:ns NR:ns ## COG: RSc1582_2 COG0072 # Protein_GI_number: 17546301 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Ralstonia solanacearum # 140 802 1 664 665 656 51.0 0 MLFSEEWLRHYINPALSSDELCETLTMGGLEVEGAEPIAPAFTGVIVAQVLTCDQHPNAD KLHVCTVDIGKGEPVQIVCGAPNVKAGVKVPCATIGAVLPGDFKIKKAKLRGVESNGMLC SSRELGISEDHSGLWILPEDAPVGEDIRVYERLDDKKIEVKATPNRGDALSVIGVGRDLR ALTGAELSLPDFSPVPATCDRVHEVRNEAPDLCGRFAGRVVCGVNAKAPTPQWMKDRLER SGQRSISALVDISNYVMLELGRPTHIFDLDKLDGPLTVRWGKEGEKGELLNGQTVDIDPY FGVISDNNGIEAIAGIMGGDHAAVSLETKNVFIEAAFWWPKAIQGRCRKLNFSTDAAYRF ERGVDFQSNVDHMEYITRLILEICGTSETKVGPVVDEIEELPVREPVRMRADRCRKVIGA DISDDKMAECFTRLGFSFKKEGDTFVVDAPSYRFDIEIEEDLIEEVARLYGYQNLTEIPP LARVAMLERSEAKLDRHELRKKMAGLGFQELINYSFISEDAEADFAEVKDPIKVLNPIAS QMAVMRTQLISGLVDRLKYNLNRKADRAALFELGRIFRRDPSVKGSDSAVEGVYQPLHLA ALVYGSARPAQWGEKARNFDFFDLKGAVEMLLPGRNLRFEKSNHPALHPGRAATAYLDGE EIGFIGELHPELAHKYELPHSPIVFELKEEALLDIGVPVNRSLSKFQPMSRDIAVFIDDA VPVQKLMDAVRKAAKKDPRLLSLSSFKLFDLYKPQDGANVGKKSLAFNMLLQRPDAQLSE EEADEAVAAVVEALAKEGAVLRD >gi|301349810|gb|ADCQ01000040.1| GENE 38 38019 - 38375 367 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859497|gb|EFL82576.1| ## NR: gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha) [Burkholderiales bacterium 1_1_47] # 1 118 1 118 118 227 100.0 1e-58 MANIGPDNFELVKELLGDKNTMNRSTLEEVLFEELGFSREMSRVFVTQFFQTISDVLATG EEVKLTTLGRFEICGRAYKMFFDPEAKEWFDAPTRLDVYFHPSKKLTDFIDYNLRQKA >gi|301349810|gb|ADCQ01000040.1| GENE 39 38523 - 38807 232 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859498|gb|EFL82577.1| ## NR: gi|302859498|gb|EFL82577.1| bacterial transferase hexapeptide repeat protein [Burkholderiales bacterium 1_1_47] # 1 94 48 141 141 177 100.0 2e-43 MKRGSQRAYRAKDILIARRIRELLYGDGYRIDAAREILNKEDREAKAGASAPQLPETSFP GFEGAGTFSQAEIDWEEFDSVVYNLEKIEEFLHN Prediction of potential genes in microbial genomes Time: Fri May 13 06:16:38 2011 Seq name: gi|301349809|gb|ADCQ01000041.1| Burkholderiales bacterium 1_1_47 cont1.41, whole genome shotgun sequence Length of sequence - 6449 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 5, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 308 - 367 4.2 1 1 Tu 1 . + CDS 485 - 1831 490 ## COG0582 Integrase - Term 1828 - 1857 3.5 2 2 Op 1 . - CDS 1870 - 2094 144 ## gi|302859500|gb|EFL82579.1| transcriptional regulator, AlpA family 3 2 Op 2 . - CDS 2091 - 2402 335 ## gi|302859501|gb|EFL82580.1| conserved hypothetical protein 4 2 Op 3 . - CDS 2380 - 2580 244 ## gi|302859502|gb|EFL82581.1| hypothetical protein HMPREF0189_01076 - Prom 2638 - 2697 2.9 - Term 2666 - 2696 1.0 5 3 Op 1 . - CDS 2751 - 3074 192 ## gi|302859503|gb|EFL82582.1| hypothetical protein HMPREF0189_01077 - Term 3079 - 3108 1.2 6 3 Op 2 . - CDS 3126 - 4091 528 ## SARI_02670 hypothetical protein - Prom 4118 - 4177 5.4 - Term 4175 - 4200 -0.5 7 4 Op 1 . - CDS 4204 - 4431 284 ## gi|302859505|gb|EFL82584.1| conserved hypothetical protein 8 4 Op 2 . - CDS 4428 - 4811 271 ## gi|302859506|gb|EFL82585.1| conserved hypothetical protein 9 4 Op 3 . - CDS 4783 - 5199 128 ## gi|302859507|gb|EFL82586.1| hypothetical protein HMPREF0189_01081 - Term 5207 - 5235 2.1 10 4 Op 4 . - CDS 5242 - 6087 595 ## COG3723 Recombinational DNA repair protein (RecE pathway) - Prom 6168 - 6227 5.9 + Prom 6183 - 6242 9.3 11 5 Tu 1 . + CDS 6262 - 6448 204 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 Predicted protein(s) >gi|301349809|gb|ADCQ01000041.1| GENE 1 485 - 1831 490 448 aa, chain + ## HITS:1 COG:AGl2007 KEGG:ns NR:ns ## COG: AGl2007 COG0582 # Protein_GI_number: 15891121 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 448 4 391 396 101 25.0 3e-21 MRLAERMTEKQLKAVTKTRACGGVPGLVVKVVKLKDGSLAKYFILRESTINRIFTLGRYP QMSLADAFKKAAEWKVKIKQGIDPSEEEKTLKASLRKKSTSGDDRLTFEQLVYRWIEFNE ARGRWNNPSKPKKEVWQGFFRNHIPDSIRMCPVEELKPEMFAAALGEKWRTMIDTPERIL SDARQAIDWAIRSEFVPPMLNPAQVKDGKLGDLLPLVRAEGGHEPALPPKRMPLFFAELM KLVPVSQTARCLAFAILTAARNSTAREATWGEIKETEGQWFHVIPRERMKVKGEKIPFDR KTPLSPQAMELLKTAPRIGMSEDAFIFPNINKGKNSPFTRDSVSALIKRMHDKQKKIDGI GWIDPDQMHLKTGKPRIVTLHGCARATFNTWAKDASGYGHPAFAKDLRESCLDHRNESYQ CAYDREQALGDMREVFDAWGAFCFSQIK >gi|301349809|gb|ADCQ01000041.1| GENE 2 1870 - 2094 144 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859500|gb|EFL82579.1| ## NR: gi|302859500|gb|EFL82579.1| transcriptional regulator, AlpA family [Burkholderiales bacterium 1_1_47] # 1 74 1 74 74 125 100.0 1e-27 MRKRKSDSSDLGVLLLDVKQVAELLNIGVSTVWALVKVGRFPEPIRLTTRCSRWRRVDVV AWSKTLGSEKEATV >gi|301349809|gb|ADCQ01000041.1| GENE 3 2091 - 2402 335 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859501|gb|EFL82580.1| ## NR: gi|302859501|gb|EFL82580.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 103 1 103 103 182 100.0 5e-45 MTLNKAVEFYSYLLMIMDHYGYDHQVYEKLPEEVDELQEAFDAYFDKPSLEHWHHVIEEC ADVHIMLEQFQMLITPEDKAEFDKICMDKLHREIGRIEGGMKK >gi|301349809|gb|ADCQ01000041.1| GENE 4 2380 - 2580 244 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859502|gb|EFL82581.1| ## NR: gi|302859502|gb|EFL82581.1| hypothetical protein HMPREF0189_01076 [Burkholderiales bacterium 1_1_47] # 1 66 1 66 66 101 100.0 2e-20 MDKIELTREEAMLVMRLLNLFLSKAHALNVRDNSDVAPAKALKQNIFNQFMKLDEQEAEN DTEQSC >gi|301349809|gb|ADCQ01000041.1| GENE 5 2751 - 3074 192 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859503|gb|EFL82582.1| ## NR: gi|302859503|gb|EFL82582.1| hypothetical protein HMPREF0189_01077 [Burkholderiales bacterium 1_1_47] # 1 107 1 107 107 207 100.0 2e-52 MTTKIYGTSDDLIEFEGDIYDEIGAYEAQDKGILLSDGTVLECSYSKTPDLGVWGFKLIR AGSLFDRIEECNDEDAEVYSDFPPSLHKRALFLSFLPSQLQESSYKM >gi|301349809|gb|ADCQ01000041.1| GENE 6 3126 - 4091 528 321 aa, chain - ## HITS:1 COG:no KEGG:SARI_02670 NR:ns ## KEGG: SARI_02670 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 3 311 20 345 359 141 35.0 4e-32 MDDKTKQSKGGVERAKKLSPERRSEIARNAALVKSGGFKALHKGNFKEVIGVDIPCYVLN DSNHTAVMSQRGIAEALGFATGGGTAIKKFLSSQSMLPYIGSELSKKTDQPIVFKLDQTG SGRKAYGYDVTILIDICQAIIRANDDNQLKSNQAFLVKNASIILQASAKLGIRELVYKLA GYNSTKEAVIAAFREYILEEARKWSKEFPDDLYAEWQRLYDIPVPVRGRNWEHYHLTLKF IYLPLAKSNGKLLALLKEAKKESKGKKYDKLHQFLNEIGLTALRAHIWQVVGIAKTSQSV EEYERRFSLAFGGQLPFEFDE >gi|301349809|gb|ADCQ01000041.1| GENE 7 4204 - 4431 284 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859505|gb|EFL82584.1| ## NR: gi|302859505|gb|EFL82584.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 75 1 75 75 131 100.0 2e-29 MKLELENTDNPRNHQFDELDQIIVLLNDPETGEQFYEILTYVNDDFVFGGPNSDPMDFDA PFPGPELMRWEKIDV >gi|301349809|gb|ADCQ01000041.1| GENE 8 4428 - 4811 271 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859506|gb|EFL82585.1| ## NR: gi|302859506|gb|EFL82585.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 127 1 127 127 245 100.0 6e-64 MKYQYRFKDKSLEQALNVIYGEEFVEDEVNRQMTNTTSYICFDLDHSSTTISKGEIAEIN EYNPDAWNPFPEVNPPECGEYLVTFKDEDADYVQQNYFDMLGRWETAHSDVIAFRALPAP YQPEARK >gi|301349809|gb|ADCQ01000041.1| GENE 9 4783 - 5199 128 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859507|gb|EFL82586.1| ## NR: gi|302859507|gb|EFL82586.1| hypothetical protein HMPREF0189_01081 [Burkholderiales bacterium 1_1_47] # 1 138 1 138 138 270 100.0 2e-71 MWKIKDPELKRKMNQFISDDGINEVCRNEMADSSTYIFFSFEDDAYNFRIDKSYFEEVPR NMLDVWKPFPEKRPPGDGAYLVTRQMKTDTGTTISFLDFARFEYGQWMFKNDVVAFCNLP EPYFPMEKKHEVPISIQR >gi|301349809|gb|ADCQ01000041.1| GENE 10 5242 - 6087 595 281 aa, chain - ## HITS:1 COG:ECs1933 KEGG:ns NR:ns ## COG: ECs1933 COG3723 # Protein_GI_number: 15831187 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Escherichia coli O157:H7 # 38 266 39 268 269 221 51.0 2e-57 MSTSDQLAAAVGAPSAPVAKPKTKAPIIVQQVLSDQFKKQLALAVPKHLSADRMARIAAT ELRKTPALLNTTPASFLGAVMQSAQLGLEPGSALGQAYLVPYGNQCQLILGYRGMIDLAR RSGQVLSLSAFAVHEGDDFNYQLGLHPDIHHVPSCEADRVKKPITFVYAVANLRGGGYQF EVMSRAEVEAVKAKAKSKNIWNNYFEAMALKTVIRRLFKYLPVSIEALQVANVDAKREAG EKIDPNDVIDINAVTVDDFKDIEDAEVVGTSQDAPAETINK >gi|301349809|gb|ADCQ01000041.1| GENE 11 6262 - 6448 204 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 62 1 62 190 125 100.0 1e-27 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFDEAF LQ Prediction of potential genes in microbial genomes Time: Fri May 13 06:17:51 2011 Seq name: gi|301349808|gb|ADCQ01000042.1| Burkholderiales bacterium 1_1_47 cont1.42, whole genome shotgun sequence Length of sequence - 35799 bp Number of predicted genes - 45, with homology - 41 Number of transcription units - 13, operones - 8 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 6 - 257 340 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein + Term 376 - 420 2.8 - Term 338 - 365 -0.1 2 2 Op 1 . - CDS 517 - 1548 909 ## COG5377 Phage-related protein, predicted endonuclease 3 2 Op 2 . - CDS 1545 - 1772 150 ## gi|302859511|gb|EFL82590.1| conserved hypothetical protein 4 2 Op 3 . - CDS 1763 - 1996 112 ## gi|302859512|gb|EFL82591.1| hypothetical protein HMPREF0189_01086 - Term 2289 - 2328 4.1 5 3 Tu 1 . - CDS 2347 - 2643 337 ## gi|302859513|gb|EFL82592.1| putative transcriptional regulator - Prom 2672 - 2731 2.6 6 4 Op 1 . - CDS 2790 - 3065 254 ## gi|302859514|gb|EFL82593.1| hypothetical protein HMPREF0189_01088 7 4 Op 2 . - CDS 3059 - 3340 277 ## gi|302859515|gb|EFL82594.1| hypothetical protein HMPREF0189_01089 - Term 3960 - 4002 1.5 8 5 Op 1 . - CDS 4030 - 4830 171 ## Sama_2780 hypothetical protein 9 5 Op 2 . - CDS 4811 - 5614 426 ## Acry_2420 hypothetical protein 10 5 Op 3 . - CDS 5682 - 6248 57 ## gi|302859518|gb|EFL82597.1| hypothetical protein HMPREF0189_01092 11 5 Op 4 . - CDS 6270 - 6953 276 ## COG2932 Predicted transcriptional regulator - Prom 6983 - 7042 4.3 + Prom 6993 - 7052 11.2 12 6 Op 1 . + CDS 7078 - 7278 275 ## gi|302859520|gb|EFL82599.1| conserved domain protein 13 6 Op 2 . + CDS 7291 - 8301 541 ## Dalk_4586 hypothetical protein 14 6 Op 3 . + CDS 8298 - 9128 314 ## COG1484 DNA replication protein 15 7 Op 1 . + CDS 9255 - 9509 134 ## gi|302859523|gb|EFL82602.1| conserved hypothetical protein 16 7 Op 2 . + CDS 9506 - 9781 189 ## gi|302859603|gb|EFL82682.1| hypothetical protein HMPREF0189_01177 17 7 Op 3 . + CDS 9821 - 9976 115 ## gi|302859524|gb|EFL82603.1| hypothetical protein HMPREF0189_01098 - Term 9733 - 9778 -0.8 18 8 Tu 1 . - CDS 9993 - 10661 451 ## ECO26_3952 hypothetical protein - Prom 10700 - 10759 5.0 + Prom 10503 - 10562 3.9 19 9 Tu 1 . + CDS 10692 - 10934 175 ## gi|302859526|gb|EFL82605.1| hypothetical protein HMPREF0189_01100 20 10 Op 1 . + CDS 11381 - 11842 399 ## ECIAI39_2692 conserved hypothetical protein from phage origin 21 10 Op 2 . + CDS 11846 - 12049 115 ## gi|302859528|gb|EFL82607.1| hypothetical protein HMPREF0189_01102 22 10 Op 3 . + CDS 12054 - 12272 68 ## + Prom 12366 - 12425 2.8 23 11 Op 1 . + CDS 12458 - 12724 377 ## gi|302859529|gb|EFL82608.1| terminase small subunit superfamily 24 11 Op 2 . + CDS 12721 - 14061 1298 ## mma_2206 hypothetical protein 25 11 Op 3 . + CDS 14104 - 14541 140 ## gi|302859531|gb|EFL82610.1| putative acetyltransferase, GNAT family 26 11 Op 4 . + CDS 14544 - 14858 479 ## gi|302859532|gb|EFL82611.1| hypothetical protein HMPREF0189_01106 27 11 Op 5 . + CDS 14861 - 15196 451 ## gi|302859533|gb|EFL82612.1| hypothetical protein HMPREF0189_01107 28 11 Op 6 . + CDS 15199 - 16845 1277 ## BAV0422 phage head-tail connector protein 29 11 Op 7 . + CDS 16872 - 17183 330 ## gi|302859535|gb|EFL82614.1| hypothetical protein HMPREF0189_01109 30 11 Op 8 . + CDS 17176 - 17886 714 ## APECO1_4043 hypothetical protein 31 11 Op 9 . + CDS 17905 - 18891 1182 ## ECIAI39_2677 conserved hypothetical protein from phage origin 32 11 Op 10 . + CDS 18904 - 19275 473 ## gi|302859538|gb|EFL82617.1| conserved hypothetical protein + Term 19302 - 19330 1.3 33 12 Op 1 . + CDS 19337 - 19981 672 ## LHK_01545 hypothetical protein 34 12 Op 2 . + CDS 19965 - 22028 1128 ## BAV0429 phage protein 35 12 Op 3 . + CDS 22086 - 22808 487 ## BAV0430 phage protein 36 12 Op 4 . + CDS 22811 - 24610 1070 ## gi|302859542|gb|EFL82621.1| hypothetical protein HMPREF0189_01116 37 12 Op 5 . + CDS 24611 - 31789 4597 ## PBPRB0577 hypothetical protein 38 12 Op 6 . + CDS 31848 - 32930 707 ## LHK_01555 hypothetical protein 39 12 Op 7 . + CDS 32917 - 33408 295 ## gi|302859545|gb|EFL82624.1| conserved hypothetical protein 40 12 Op 8 . + CDS 33423 - 33725 491 ## Bpro_3742 hypothetical protein 41 12 Op 9 . + CDS 33722 - 34318 270 ## gi|302859547|gb|EFL82626.1| putative cell wall protein DAN4 42 12 Op 10 . + CDS 34369 - 34707 63 ## 43 12 Op 11 . + CDS 34742 - 35140 109 ## 44 12 Op 12 . + CDS 35165 - 35536 202 ## gi|302859548|gb|EFL82627.1| hypothetical protein HMPREF0189_01122 + Term 35679 - 35723 2.6 - Term 35441 - 35477 -1.0 45 13 Tu 1 . - CDS 35525 - 35629 69 ## Predicted protein(s) >gi|301349808|gb|ADCQ01000042.1| GENE 1 6 - 257 340 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 83 513 595 595 158 92.0 1e-37 MRENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAG PETPEEVPEEPEIEPLLGTDIEI >gi|301349808|gb|ADCQ01000042.1| GENE 2 517 - 1548 909 343 aa, chain - ## HITS:1 COG:BS_yqaJ KEGG:ns NR:ns ## COG: BS_yqaJ COG5377 # Protein_GI_number: 16079682 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus subtilis # 6 337 17 311 319 127 30.0 4e-29 MTNEQRAAWLEGRRTGIGGSDVAAVLGLNPWKTPLDVWNDKLGLSEDKEMSEPAYWGTVL EDTVAKEFHLRTGKRVQKVSHQFADPETPWAIANIDRAIINPEIARKVRPLLKVEEIEKY ADITGVERIINTDVAFEAKTANAFTADLWGPSQELEIKQNNLRTEHVIPLYYETQIQWYC GILKLKGMYLAVLIGGSDFRMYWVDARPDVFQVIKEKCSRFWNENVLKKIPPDPINIDDV LQLYGKSNGKAVEAQGELAIDYGEYARIAGEIKELKKQQDALKTKIAIGMKDNEILTLDG KKVLTYKTQTSKRFDTDTFREDHLDDYYDYLKESSTRVMRVCA >gi|301349808|gb|ADCQ01000042.1| GENE 3 1545 - 1772 150 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859511|gb|EFL82590.1| ## NR: gi|302859511|gb|EFL82590.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 75 1 75 75 103 100.0 3e-21 MAVITDAERKKQRNRELKRQYYAKNKEKRVGQSKEWYRKRREEELALRNDKTPILPQTPF SALFTDFFIDRNPKK >gi|301349808|gb|ADCQ01000042.1| GENE 4 1763 - 1996 112 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859512|gb|EFL82591.1| ## NR: gi|302859512|gb|EFL82591.1| hypothetical protein HMPREF0189_01086 [Burkholderiales bacterium 1_1_47] # 1 77 1 77 77 127 100.0 2e-28 MHVTPRTCPGPGDLWQPSWQEEKREAEYERLLERFFEEYIPRYCDERINQLAEAGEDERH PEIEPLFDGFLKENEWR >gi|301349808|gb|ADCQ01000042.1| GENE 5 2347 - 2643 337 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859513|gb|EFL82592.1| ## NR: gi|302859513|gb|EFL82592.1| putative transcriptional regulator [Burkholderiales bacterium 1_1_47] # 1 98 1 98 98 163 100.0 4e-39 MILLPDEQKQIFDEVVDDILTERGSATCLTDALAYAERAVVSALLYGKKEVTLDLAHVVS TAEAQKEVKALFKEYALNSIGDLAIEAIDKDIYPDVKN >gi|301349808|gb|ADCQ01000042.1| GENE 6 2790 - 3065 254 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859514|gb|EFL82593.1| ## NR: gi|302859514|gb|EFL82593.1| hypothetical protein HMPREF0189_01088 [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 154 100.0 1e-36 MLATYERKKVTEYTSFNYEFKVFYKDEYVCDLLKIGRHEWAFSAFQSCDKLEGLQMFLYN KTSWETFKKKEEAIQHLENVLAAYESGERSA >gi|301349808|gb|ADCQ01000042.1| GENE 7 3059 - 3340 277 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859515|gb|EFL82594.1| ## NR: gi|302859515|gb|EFL82594.1| hypothetical protein HMPREF0189_01089 [Burkholderiales bacterium 1_1_47] # 1 93 15 107 107 174 100.0 2e-42 MLLKVKRVIPRVYEIYYKGKNIVSLVRPKRNDWRFSGIWEKEQCDVNDVLLANVAGLSFQ TKRQALIELEVIFARFEALQAELGSRIIRRKTC >gi|301349808|gb|ADCQ01000042.1| GENE 8 4030 - 4830 171 266 aa, chain - ## HITS:1 COG:no KEGG:Sama_2780 NR:ns ## KEGG: Sama_2780 # Name: not_defined # Def: hypothetical protein # Organism: S.amazonensis # Pathway: not_defined # 5 266 8 288 289 80 24.0 6e-14 MNLKFPDLPDFKASWAPLLWTPVVGSQERFMIGVITLFQGAVSVKPILSDRILESLYRKN NRQVKSLIDFSINALNDQAVSSIQELVAPITGLKIGKEYQTFCDGLDDLVEQAIMDQSSL VSPEDYRKFKIPQKNKRIQLVKEFRRNVKDNAIKTHPELCNYFDQQYRIGEYTAKYDFLS DRFICQYGLLREFSLTEDLNTAKQRLLDLTIFPHARTRGLILDCSLVDTSAENAVNSMAK ATDVKFIKTSSPEETADVLIEENKAA >gi|301349808|gb|ADCQ01000042.1| GENE 9 4811 - 5614 426 267 aa, chain - ## HITS:1 COG:no KEGG:Acry_2420 NR:ns ## KEGG: Acry_2420 # Name: not_defined # Def: hypothetical protein # Organism: A.cryptum # Pathway: not_defined # 1 248 6 267 271 74 25.0 4e-12 MTSSNFGIRLATVLKKEPFADKGINDAYKATVILEDKTKRMALVKKINFDEVIRELFSAC LGMKLELPIPSQFLVWDGEMKSILYGCEFVNYPNYMNAFTAKGTTIEAGYKALKAWKGWC STVAFDELIINKDRHLGNILWGGEDNFYLIDHGRTFGEPSWLERQNRLIDIYKKVLKPSA KELEDAIRNCQKKAEKFPKDIGKRSLEEFANLSIEPILLNQLRREAEKLTKILDESFEKL PDQLSSHLPSGEFGPLFADDDNEPKVS >gi|301349808|gb|ADCQ01000042.1| GENE 10 5682 - 6248 57 188 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859518|gb|EFL82597.1| ## NR: gi|302859518|gb|EFL82597.1| hypothetical protein HMPREF0189_01092 [Burkholderiales bacterium 1_1_47] # 1 188 1 188 188 361 100.0 1e-98 MLFCERGIRAPESLYSLNKFYVIPSEAEKKWNLMGVYVPIFFLFISHAKAGMSAETLNQT ATLLCEALFKKKYKRSFFFFKKLIEDPFEDCWDEVIAIAFSAIWLQAKCGDFMEKGYSMS WHLGRQFEYMSVLNFRPNFLRSRLEVDEKLTRIYQSECKKEKEISALAWRLSRMPASERE KLLQRRGQ >gi|301349808|gb|ADCQ01000042.1| GENE 11 6270 - 6953 276 227 aa, chain - ## HITS:1 COG:XF2511 KEGG:ns NR:ns ## COG: XF2511 COG2932 # Protein_GI_number: 15839101 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Xylella fastidiosa 9a5c # 6 225 2 252 256 118 32.0 1e-26 MNEKTTLAERLTLALSDSGLKKSDIARLCFISPASVSDWFSGKSKSIKSIYLPKVAKVLG VSSTWLATGNGPMKSPNVLVTEDVCDDDDWVEIPEYKIRFAAGFEQNSTLEELASEYKAA YRRSWFQRKNINPEDCKRFKVKGDSMEPLLLDHDVVLVDCSKTEIIDGRIYAFVFGDALR VKRLYRKIDGSIMVHSENPNFPDETISPADTEQVQVIGEVIERSGSV >gi|301349808|gb|ADCQ01000042.1| GENE 12 7078 - 7278 275 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859520|gb|EFL82599.1| ## NR: gi|302859520|gb|EFL82599.1| conserved domain protein [Burkholderiales bacterium 1_1_47] # 1 66 1 66 66 125 100.0 8e-28 MRKKTDTQTARLIVDSLGGTTAVANICEVKPASVSGWLKSGMPEGRLLFLQKKFKRIPVI KHAVAN >gi|301349808|gb|ADCQ01000042.1| GENE 13 7291 - 8301 541 336 aa, chain + ## HITS:1 COG:no KEGG:Dalk_4586 NR:ns ## KEGG: Dalk_4586 # Name: not_defined # Def: hypothetical protein # Organism: D.alkenivorans # Pathway: not_defined # 1 148 1 148 273 142 44.0 2e-32 MARYRKIDVRMWNDRKFRELSDNGKLAFILLLTHPDTTQIGTIRTRVSNLADELGWQRDA MSHAIQEVTLNGMIDADEKAGLMVINNFLKYNAPSSPNAFKSWCELIDLMPECDLLDKHV ARLKTFVDGLSVGMRNAIPNDLIDAIKDAMSRTNGQPCRTQEQDQEQEQDKEIHTHEHHP KAFETFAGRVCEKETPLKTAPVEQELPLQRTTVSKTETVEKKSKVKRQKKEKIPCPFKDG DQIPEDYLTTAKRYGVQDPQSLFDSLIAYCKAKDVEYADYKAAFTTFCINDKAKREKKSQ NQFNNAPPFEYEPPGGFTDDYYRDQCEFDEHGKLKL >gi|301349808|gb|ADCQ01000042.1| GENE 14 8298 - 9128 314 276 aa, chain + ## HITS:1 COG:ECs5321 KEGG:ns NR:ns ## COG: ECs5321 COG1484 # Protein_GI_number: 15834575 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Escherichia coli O157:H7 # 53 253 24 222 245 95 33.0 9e-20 MNNTDSKNLKAVNTILGKLEIRQVKMNCILHGEYLANQVWLGGKLKEISECPKCHEEHLA ERAIDEEKARKQEEAKNRQARIKETRMPLEYQTKGFSTFIQETDSQKAAFKLARRFVKGW EKAKAGGYGLLFLGGCGTGKTHLACAIMLELMERYLFVYPRYYKVSEIFSAVRSTYQTGV ITNEEEMLKFFSSIQLLVIDEVGIQKGSEAEKRILFSILDNRVTSNKPTILMSNLGPKAL AELLGDRLYDRVRSKCVPMLFAGPSMRKPATADLFD >gi|301349808|gb|ADCQ01000042.1| GENE 15 9255 - 9509 134 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859523|gb|EFL82602.1| ## NR: gi|302859523|gb|EFL82602.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 84 1 84 84 121 100.0 1e-26 MNNGFLCVFLYLIGGSFVGAFLTGNGMRFDGLRFFTLLGFSGGVLSLLDFAWFAHSGSNL DYSLTLLAIVVALDFIFAFGRKSE >gi|301349808|gb|ADCQ01000042.1| GENE 16 9506 - 9781 189 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859603|gb|EFL82682.1| ## NR: gi|302859603|gb|EFL82682.1| hypothetical protein HMPREF0189_01177 [Burkholderiales bacterium 1_1_47] # 1 60 1 60 60 100 75.0 4e-20 MSGCCLYCKFAESYWIDPAGNIRRPPKSSFGDMNIFCHHPDKGASIECYPISFTRCSVFE RDTDERIERRRAFFSQFDRYRVHAELIAQRR >gi|301349808|gb|ADCQ01000042.1| GENE 17 9821 - 9976 115 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859524|gb|EFL82603.1| ## NR: gi|302859524|gb|EFL82603.1| hypothetical protein HMPREF0189_01098 [Burkholderiales bacterium 1_1_47] # 1 51 1 51 51 76 100.0 6e-13 MEVTLIVIAVTQIFLSIAIVFLSLTQKDIRNSMQSLLKIFRELDGYKRRND >gi|301349808|gb|ADCQ01000042.1| GENE 18 9993 - 10661 451 222 aa, chain - ## HITS:1 COG:no KEGG:ECO26_3952 NR:ns ## KEGG: ECO26_3952 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O26_H11 # Pathway: not_defined # 64 219 1 150 174 85 30.0 9e-16 MPESYKCPHCGTLTMFVLKLVVSSYPERRETAPLNNFYESQSDGLEYRGNNGLFHFFHPK RVFVTECCSCGNLVFWENGEIQYPVRNGIIPAEDMPEDAKEVFNEAQAIIALSPRAACAL LRVCLERIVDWYGENEHVEGFKKSDKLYKKIETIGISPAFQRICKACRIAGNEHAHSGEI DLSGEDSFEIAEAMSRMINSLVNTWIAPIRESEEVLRKLGKE >gi|301349808|gb|ADCQ01000042.1| GENE 19 10692 - 10934 175 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859526|gb|EFL82605.1| ## NR: gi|302859526|gb|EFL82605.1| hypothetical protein HMPREF0189_01100 [Burkholderiales bacterium 1_1_47] # 1 80 1 80 80 137 100.0 3e-31 MKHIDIVKNRTACINTVFNSIEEAKNTLKKLEEMAAQRADGRVLDIHEVGVTSHKLRGCV DRILVGLVESQTVSENQLRE >gi|301349808|gb|ADCQ01000042.1| GENE 20 11381 - 11842 399 153 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_2692 NR:ns ## KEGG: ECIAI39_2692 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_IAI39 # Pathway: not_defined # 40 153 2 114 114 105 52.0 7e-22 MSMMRFKSTDDPAYKELLAKTKTKAGPIVLKKISGFVGGKKNGFAKGRMKAGQMNETEKA YAAYLESERIAGRIKAYWFESIKLKIAEDTCWYNPDFLVLTAEDQLELHEVKGSPKFFAD DAKVKTKVCATEYPFRMLVVYPERGKGWTYQEF >gi|301349808|gb|ADCQ01000042.1| GENE 21 11846 - 12049 115 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859528|gb|EFL82607.1| ## NR: gi|302859528|gb|EFL82607.1| hypothetical protein HMPREF0189_01102 [Burkholderiales bacterium 1_1_47] # 1 67 1 67 67 104 100.0 1e-21 MPQRNEIQTNTKATLGTASLLPRRAAEYLQQAAADAKSMPPESMRRRQVIDKAIILVKRE FPEFFFR >gi|301349808|gb|ADCQ01000042.1| GENE 22 12054 - 12272 68 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAVSRLGVPIGEDSPHAKYTDREVDLVLQLRGEAFSYRQIARMMEMPRSTVFAICTGLI RGKIPHAYRRQK >gi|301349808|gb|ADCQ01000042.1| GENE 23 12458 - 12724 377 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859529|gb|EFL82608.1| ## NR: gi|302859529|gb|EFL82608.1| terminase small subunit superfamily [Burkholderiales bacterium 1_1_47] # 1 88 81 168 168 146 100.0 3e-34 MEEKTGYTVQKWREELLEIRETLSEKIPVYQNEDGEVIMGLKDAPSLLKAYDMLGKHLGA YSKDNESKLEGKIEFVWDDGKKQTEKEE >gi|301349808|gb|ADCQ01000042.1| GENE 24 12721 - 14061 1298 446 aa, chain + ## HITS:1 COG:no KEGG:mma_2206 NR:ns ## KEGG: mma_2206 # Name: not_defined # Def: hypothetical protein # Organism: M.massiliensis # Pathway: not_defined # 3 221 6 217 436 220 50.0 1e-55 MKVVIPYRPRFPQDEIHKQLETHRFCVLVAHRRLGKTVLSVNHLIKRAITDRKERGMYAY LAPFRNQAEQIAWGYLKHYTSQIPAISINEQKLSILLPNGATIRIFGADNPDALRGMYFD GVVIDEVAQIKPTLWGEVIRPALADRKGWAAFIGTPKGINLFSQLYDQALNLMSKGDPDW IAMLYSVEQTHVIDEKELAALKVEMSENEFRQEFLCDFSAAQDNGLIPIDDIRAAANKFY RESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMALADRIAVEMAKEK PDAVFIDSGAGQGVIDRLRQMRFDVVEVPFGAQAIDKEQFANRRMEMWWHMAQWIKQGGA IPPDPVLQGDLGAPTYGYTPKGPKILEAKDKLKERIGRSPDLADALALTFAAPVAPKLSR SMERAIYGAKDSYDPQEAFESEYWNS >gi|301349808|gb|ADCQ01000042.1| GENE 25 14104 - 14541 140 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859531|gb|EFL82610.1| ## NR: gi|302859531|gb|EFL82610.1| putative acetyltransferase, GNAT family [Burkholderiales bacterium 1_1_47] # 1 145 1 145 145 286 100.0 2e-76 MKIIDASLVEIIDRCSELIDSAMSEAGLPNRRAVPDRSIYRILSEGTDSFGLIVEDQGKP VGFASVFVFTHQHSGEVFAQNDAIYLSPEYRNTSIGGRLAVLAERKAIEAGAKFFLWDVP EDSPLAKALAKRVRGRKHLLFFKEL >gi|301349808|gb|ADCQ01000042.1| GENE 26 14544 - 14858 479 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859532|gb|EFL82611.1| ## NR: gi|302859532|gb|EFL82611.1| hypothetical protein HMPREF0189_01106 [Burkholderiales bacterium 1_1_47] # 1 104 1 104 104 123 100.0 3e-27 MGMTAAVIAGTLVGAVTSGLNAYEQKRAGDRQTSAAKEQLAQQQALAQEEDQARNKANRK QADLDGLLADNTIDNGLGSTLLTNGNAAPLNPGALGIGSSLLGG >gi|301349808|gb|ADCQ01000042.1| GENE 27 14861 - 15196 451 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859533|gb|EFL82612.1| ## NR: gi|302859533|gb|EFL82612.1| hypothetical protein HMPREF0189_01107 [Burkholderiales bacterium 1_1_47] # 1 111 1 111 111 108 100.0 8e-23 MGAVSSVVHAVGKVVKPVVKAVANVATAGMYNHMQNKAKDQARKAQAQAARQQAQAEEQQ SQNANMANKKHANVGDTVIDDTPEGMSETVLASEAAQDDRFKLQKKQLIGG >gi|301349808|gb|ADCQ01000042.1| GENE 28 15199 - 16845 1277 548 aa, chain + ## HITS:1 COG:no KEGG:BAV0422 NR:ns ## KEGG: BAV0422 # Name: not_defined # Def: phage head-tail connector protein # Organism: B.avium # Pathway: not_defined # 6 536 8 540 555 426 44.0 1e-117 MPADIKLINQRFESLKQERSSWEDLWRDIRDYCLPDLGCFPGEDATQGSKRYRKILDAEA IDCADVLAAGLLGGVSSPSRPWLRLTTMDPDLDKNPAVKEWMTKVQDLLLLYFSKAECYN ALHQSYLELPVFGTACTIVKPHPEQLISLQNLTIGEYWLAEDDYGKVDTMYRRLSLTAKQ MVQQWGFEAVNNDVRQAFEKDPFTRFNVIHAIEPRIERNPDKRDNKNMPWQSVYFQEGVQ DKVLSESGFRNFPALCPRWMTSGGSVYGRGPGAKALSAQKSLQRLHLRLAELVDYGTRPP ILYPSTLKDQLSQFKPGGRVAVNPQEAPIIRSMWEVRTDPQAMLALIQSTRQDIQRIFFV NVFQMIAATANQTDRTATEVQALEQEKVMMLGPVLERLHTELLDPLVTNAFGFMVEYNML PEVPEELYGRELSIEYVSVLAEAQKNASANGIVRTAQQIGLLAQINPQAVDKLDVDATID QLADMNGVPPSLIVTGQKVALIRQQRAEQQQAQMQAAQLQQAMTSLKDLGQAADSQGLQE AFSEEGAQ >gi|301349808|gb|ADCQ01000042.1| GENE 29 16872 - 17183 330 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859535|gb|EFL82614.1| ## NR: gi|302859535|gb|EFL82614.1| hypothetical protein HMPREF0189_01109 [Burkholderiales bacterium 1_1_47] # 1 103 1 103 103 152 100.0 5e-36 MTMTDIDDPLLEIEQRELAEKAEKQKLKELEIAIKKTLETVEGRRIFQWILDMTAVDSSV TSQDMTLMTIASARRDIGLQILNRLKGINLELVRRMENEKLNG >gi|301349808|gb|ADCQ01000042.1| GENE 30 17176 - 17886 714 236 aa, chain + ## HITS:1 COG:no KEGG:APECO1_4043 NR:ns ## KEGG: APECO1_4043 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 6 224 17 228 233 78 30.0 3e-13 MAETAETTVNEAGAAATEGDVPPADPTPAPQDATPPAQPETSAEAPQPKDEEPEGMGADE EEGESKEEAEKKEGNDVLGAPEKGYDETGIELPEGIQLDEGAIEAFKKECKDLNLSQAAY SKLVTNMTSVLAKRAEEQSAQVKQALTAEAKADPQIGGANYAANLKSASRFYAKFFDAET RQFFESVGLNRHAGFIKGCLAAQQALSDDAVVKGGRSGELSTAERARAFFPNSKMN >gi|301349808|gb|ADCQ01000042.1| GENE 31 17905 - 18891 1182 328 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_2677 NR:ns ## KEGG: ECIAI39_2677 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_IAI39 # Pathway: not_defined # 7 324 12 326 330 247 42.0 4e-64 MAAEYPTLVDLASRLDPKGEIIPIAEVLSKRDPILKLLRWKECNKTDGYLHAIRTGIPEP TWRRLYQGVQPQKSTTAQVTDTCGNVEMYAEVDKDLADVNGNTAAWRLSEQKPFFAGMGN DMAKTMFYGDIDAEPDKFMGLAARYNDTSSTTPSSRNVIKAVSTGATTKKVTSIFIVSMD QFFGIYPKGSKIGLQHTDKGQCTHMNSDGSMYEVYRDHYKWQAGAALNDWRGVVRVCNIP ISDGAVDMGSEDLIKKLIVAKNRIPSDLRTNLHLFCAEEVHTALELAAYAKSTNVLKVVE AAEQFKTMFFDIPIEVSDSISLTEDLVS >gi|301349808|gb|ADCQ01000042.1| GENE 32 18904 - 19275 473 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859538|gb|EFL82617.1| ## NR: gi|302859538|gb|EFL82617.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 123 1 123 123 189 100.0 5e-47 MRFDSKLMFSDGQSLSGTSGTSTNTLDLNKAGVSEGELYVILSVSGSALPTSIEVLGGSA STSVTDTVATAYGTDTAIKLPQGCPRYLKLSFTGTAMSCKVTAGISLCASSPKGKRIGDY AAE >gi|301349808|gb|ADCQ01000042.1| GENE 33 19337 - 19981 672 214 aa, chain + ## HITS:1 COG:no KEGG:LHK_01545 NR:ns ## KEGG: LHK_01545 # Name: not_defined # Def: hypothetical protein # Organism: L.hongkongensis # Pathway: not_defined # 1 200 1 199 201 128 36.0 1e-28 MSSVVDICNIALSRLGDRATVTSIDPPEGSAQADHCRRFYPIALKTILATYNWSFATTRK ELARLTAEPIGGGYAFPIPADCVKIIYAYPVDENGNATRQTLHYVRELINGQVCLVAEQK RIWIRYITTEVKPEKFSDVFSDALAFLLASNLAGTVVPGMTGVQMAAEMMRFYEDRLLKA QAQDAVQDRDHLSYKPDFIGDYDDWGRDGHEWLN >gi|301349808|gb|ADCQ01000042.1| GENE 34 19965 - 22028 1128 687 aa, chain + ## HITS:1 COG:no KEGG:BAV0429 NR:ns ## KEGG: BAV0429 # Name: not_defined # Def: phage protein # Organism: B.avium # Pathway: not_defined # 4 686 3 678 681 793 58.0 0 MSGSTKVLQRSFAGGEISPEMFGRTDDTKYQTGLETCLNFLCRPQGPIENRPGFEFVREV KDSSKKVRLIPFIFNAQQTFVIELGHKYARFHSFGATLMNGNQPYEITTPWDEDDLFELE YVQSNDIITVTHEDYAPTEIRRYSNTDWRLATISFSSTLATPTNVTAVRETTTGNEDKNA DKYTFQYKVSCLNADKTIESEPSAAVSCTANLYATGTTIKISCSAVSGASYYRFYKNQGG IYGYLGDSETTSIIDDNIAPKTDITPRRYDSVVSSGNYPSAVGYFEQRRWFAGFKTDPQR VVATRSGTESDMTYSLPSKDDDRINFRIAATEFNKILHISPLSHLILLTTGSEIRISPQN SDAITPSSISARPQSYNGATTVRPLVYNNNLIFASARDGHVRELAYQYQAGGFVSGDLCL RSQHLFDFKTIKDATAQKAPYPIMWFVSSDGNLLGLTYIPEQQVGSWHRHNTDGVFESCC AVSEGVEDALYCVIRRTINGSQKRYVERMRTRNFKNLADAFFVDSGATYNGTPTTTISGI DWLEGKTVSILADGAVQPQQKVVNGKITLNHEASVVQVGLPYQSDVKTLPVILQDQSGGM GRVKNVYKITVRVNRSSGIFAGPSFDKKDLVEYKQRTIEPCGSPPALKSDEIDLQLYSTW TRGGQVCLRQLDPLPVTMLALTCDLSA >gi|301349808|gb|ADCQ01000042.1| GENE 35 22086 - 22808 487 240 aa, chain + ## HITS:1 COG:no KEGG:BAV0430 NR:ns ## KEGG: BAV0430 # Name: not_defined # Def: phage protein # Organism: B.avium # Pathway: not_defined # 64 189 33 158 197 75 38.0 2e-12 MGKYDQYAGEDLDVPLYEGQGSSFGFSKITSDAANGLGSFGLGFSMGHNAVNGIVAPILA FRQAKQQKQLYKIQGEISKLQAQSFRTAAEDVLKRAQQEVAAVTFRAGQTKAKTRVAQAA SGVALGTGNTAEVMASYDIAKEMQVNQILANAVAESFGYRRRAVNYSNNAIALNAQAKNI SPWASAVATGMSILMNPNGAKGNPLDPNSGSTGSGYLDNVVSIGKLFTSGAGGMSGGAGV >gi|301349808|gb|ADCQ01000042.1| GENE 36 22811 - 24610 1070 599 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859542|gb|EFL82621.1| ## NR: gi|302859542|gb|EFL82621.1| hypothetical protein HMPREF0189_01116 [Burkholderiales bacterium 1_1_47] # 1 599 1 599 599 1095 100.0 0 MGTMKLPSVDNPYGVPVAISQPGGMQSEIITAPESPVSVRHAGEAMNKLSGDLRDAYDKW QLEIDKTRLDDLSTQLEHARIDLRVNPENGYERLKGVNALERPDGRSLNDEVSDAFKQRY EKLREQAGNARVRSAFDRLYQASSLKLNDQVNTYVTSQQLEYKDAVLKNQLSLALNQAAD ADPETARSGLVAARSIAQQIGDFHGTPVDMIKVLGPIHELRVSNMIDAGQLSQAKAYIAQ HKTEMGPKAGLRLKSAMQMASDRATINRYTDEILKKDNGKARELLDNINAVPEKYRAAVK NKVYGAKREQEALEKATNYDNLNQAFQFVDNGEEVPASLMSTIKTNDRVGYEKIQRAIEH QKFPCTEDDPAVLGNLEELAERDPEEFAQTNFDQYRGYLTKQTIKTLKYNVEKLDDQQYK AFIAKVKQRCNDEKFNTKKTKNAVLSAQLLYEARSKQADKNVLSNETLNAMVNTVFEGQK PGFFFGYNDVSGADFRQEKKLEWEALPQAGFRTKATEADRLNEVNKIRVQQLNLPPLQNL TKRQSQLIDAKIGGIPLPTELMNRAYAEAKRQAKNDPKNPAVTKKAVNLIALHMAFGEK >gi|301349808|gb|ADCQ01000042.1| GENE 37 24611 - 31789 4597 2392 aa, chain + ## HITS:1 COG:no KEGG:PBPRB0577 NR:ns ## KEGG: PBPRB0577 # Name: not_defined # Def: hypothetical protein # Organism: P.profundum # Pathway: not_defined # 1009 2193 773 1887 2047 194 23.0 3e-47 MPNSFITDEQAIETPDGSMEVPGEPTTQSVVAQEPTEGPTVEPVNPVSVPPAKPFNPYEI IERDAYSASQFVLGKDPGRTAEVLDISRQLGISPTEVDSDFEGSKYRLEKLRTANTLKQS PGLSDYITNNPDKAPVLKNDLKPLTKTDILLNELAEKMAARNPAEPPKSLTYADEETEWK REDEDYEPEVKTLDGWRAGYLSGELQNEQGRMYEDLRLGKITKDAAFEKRSKEIDDTLAA VDEKFKDSWLSYPTMKTIGQMLTVSGDTAAKGAALGMGAGALGLGALALAGAPVAVPASL GALGLMTMSGAVMETSKEVEGGLAYKDMREAGIDDDVARRLSGTVGFVNGSLEAIGDAVL TKFGGKLLGITGFKQMFGQKVKEKTIEALKKPTFRAAAVDVAKAFTTGLATEVGVEELQE ISNIVAEEAAKKLTKDVQFDSITPDEVMDRLADIGIETIKGVWALGLAGGAVGMTRHISK IKTAQRNQEFFENLNQIAPEITARETAPGVVSEVVQNQAESAGKPTIYVDGEMFAQTMQE KNVRLEDLKKINPELGNAIQKAVASGGDVEISTGDYAAHIAGTPFGEALTQHLRFNPDEL SAYEAKKARKLVSDWVGQNDWDLSTEEGREAATKEINQAVNQVQKSKYAQAFDDLTKSMT QSLMASRISGYREERIARQYARLQAASIVRLAKDANIAPERIAEFAPKIQSSAGIERTEL VQKRAGQKENPAVSAPEKTAEQKLKEDSDTWGKLVDGLKEKPTQNVVMLKQTPLVMKLIG AKFLTLRATPHMFDGALPGAKKSSPSHHIHPEISKRVLKQIPEALTDPIAIFRDDRRENT YLFMLDLKAENNQNVVVAVKFNGPGRHAEINLAKTSWGPENTLYFPLQEQNNALVYANSQ KISRWNKSSGIYSLRGSNDSGASVKTEADLVKLRELFSGYYQTEKIEPRSINVPATEVFA KLGLELPEGFKPTNVTLISTRPVTERSNIEEFSGAVLPENAPKELVDALEEKGIRVELSS NRKTVRAKAVSQLSQKIQDSLVYFQNGTNERGGYSPKQNTIHLTPNADLSTFAHEMSHWY LENLMQLAGEAGVSGLIKQDAETLLKDFGLKSLDEWKNLSIEEKRKFHERFAYQTEIYLA TGKPHNPKLITVFKNLGKWIRDVYRAWTGGVAEQRAAQYKSEFGEELPQLSEEVQRVMDR MLNAEADLYQAEVSESMRPLFDEKPKDMSEEDWIAMQKAHDEALADGEALLNEAKAKDEK WYSNARAKTLRMIQRKAKEIRDKVKEGVTAEIEAEAGTRAYELIKKSNETFGINWKFDPE ALTAAKVSSSAIKKLSALGLTKKGGMAPSEVMELMRGQGNAFATVQDMVQGLLEGTRKDE RIEEETTRRCIEKYSENFTQAGIDAQITEALQNEARARFVATEFKYLAGSPAGISQRMIN EAAKRSAELMLANMPVYNVNPRNFVAMQARASRKAYEALASGDKGRAAAYKRQQLMYLQA ALQALDVDKQVDRFERIRKKTFSADKKLAKTYDLDVLNVLRAVFNIEGLGRTKPEDVDLL AVEKSINAFKDMAPPVYEMLSGVFSRYKGINGGQGYSNLTYGDFQSLAEDVSMLFAMSRQ WKETTREAKAEAREQAAKELIAQMNTQNLTSHSVGQTEATTPFEKFRQDGLLSLGSSLVR VESWCNKMDTGNPNHPFRSHIYDPIAQATAKFRNRNSELQQKLAELIKPLQKDWLSRTDI HAPTLNYTFRTKAELIGALLHTGNESNKEKLLLGGRGEGNAWAEMVEDQEGNTKLDTKRW DQFIAQCYADGTITKADMDFVQQVWDLLESTKEDAQKAYKDLYGYTFKEIEASPIQTPWG EYRGGYVPATTDKYLVADKATFDEIDRITEQDYLSAMPVSQPGFTKSRASGYHEPLSFDV AIISNHISSVLKFCYIAPVAQDVGKLLLNKDLSEKLNAQDPTTLRDMLRPWLKRSYSQQV SDGRSGWISKKLNELRGIAGINIMMGHIVNALQQFTGFSIALTKVSGRNLIDAAGVFARD PRKVTEQITQLSPFMMSRLNDRAMEFQSQIYKISSTQDNRVTKQKGIFNKTVAAKAKYIQ PVHDFLMRKGYFLQSFCQIPIDAITWVGAYNQALQKGRTTEEAVLDADSVIRTTMSDFSP ENVANVETGNALYRSFLVFYNYFNMQFNLLNERFHADSMEKKLIKRYGMYARDALLVVTI PSVVAKLIEAVVFGDPDTGDDGEFGMDDMLRMLASESFKNAVAMAPIAGQFINTAGASLA KDQKGGAVSDVARFIWGTDPYVGRIMTAPAYGLIEGSGKAIQQTVEILNDEEVNARSYTR NMLDLLSVVTGLPLGFLKKPLGYMAGVEAGDIQPADAGEFVQGVLSGKAKKD >gi|301349808|gb|ADCQ01000042.1| GENE 38 31848 - 32930 707 360 aa, chain + ## HITS:1 COG:no KEGG:LHK_01555 NR:ns ## KEGG: LHK_01555 # Name: not_defined # Def: hypothetical protein # Organism: L.hongkongensis # Pathway: not_defined # 1 151 1 150 445 113 44.0 1e-23 MSISQELRRAGPYISDGSTKAFTFSFKVMKESDLSVVVADNKDTSVSETLASTNYTVTLN DNQENSPGGTVTLNNALPSGKALAILSNAPFLQEKVFTNAGGFYPEVLNDALDTLTIYCQ QLKEALGRCLIVPSTSEHTPQEVLAEVLEIASTANDYAQQAQAIYDTVKGDVAEIKALKD EIDDLVLTFQTIEQLAAQAQANAHSTNDDKLTCQQALQQIQAIAAQTGFSTRTSPSVSEN ETFPLSNLTPSTYIKAGDLVLNTTNGDLYRVTAVTATTATVGAKISNLRGPRGERGLQGS PGPAGGVGPQGPMGQSPFATCFGQFQVNGEGMLQLEYVGLAPAEFSINDNGIVEATYANS >gi|301349808|gb|ADCQ01000042.1| GENE 39 32917 - 33408 295 163 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859545|gb|EFL82624.1| ## NR: gi|302859545|gb|EFL82624.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 163 1 163 163 283 100.0 3e-75 MPTLSIGKVRYVWKGTWSATASYDILDRVQDSDGFIYESIKAVPAGTVLTNTSYWIKLSV QGPRGLKGDIGNDGPKGDTGEAPTAILYTEQNNLTDAQRAQARTNIGWAAAFAASFASAI AAWVSSSLGASIEAYLVPILKQLCLDNGATQAEIDALENECDS >gi|301349808|gb|ADCQ01000042.1| GENE 40 33423 - 33725 491 100 aa, chain + ## HITS:1 COG:no KEGG:Bpro_3742 NR:ns ## KEGG: Bpro_3742 # Name: not_defined # Def: hypothetical protein # Organism: Polaromonas # Pathway: not_defined # 17 84 20 87 100 71 48.0 1e-11 MNTQEIREEARKSCKYPVISPEAVDAMIDHADYHHVAGTGTMVCTLVLKNGFTVTDTSAC VDVRNFNEETGKKISYSKARDKVFHVLAFAYCDEHYGEQA >gi|301349808|gb|ADCQ01000042.1| GENE 41 33722 - 34318 270 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859547|gb|EFL82626.1| ## NR: gi|302859547|gb|EFL82626.1| putative cell wall protein DAN4 [Burkholderiales bacterium 1_1_47] # 1 198 1 198 198 379 100.0 1e-104 MTTLAEIKAKYLSEAMARPIEKYCIKDHTGRIVARSNSPVVHVFNNEADDAYAAEHYQLK EIYNGMKFWLGELSPAGLYASADGQFYTETELPENTDAFCKERYSNEIKAERNARISDTD DYVKLPDITVARSAGAKRSALEDADRTALETYRQALRNLPEAQGFPFVPWPEFPAALAYE LQQKVDARQNMRQGGFNA >gi|301349808|gb|ADCQ01000042.1| GENE 42 34369 - 34707 63 112 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGGGSKLIYGKEAEQFGLPVWPSPTVINLPDEPEKSPTYVATTPCLVCLYVENTVGSVDH IGLSAGGNFITLIRRSAFNGAVYIYAKKGDTVIASYKGTTAQLRIYPLVLPT >gi|301349808|gb|ADCQ01000042.1| GENE 43 34742 - 35140 109 132 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLIKKLIQRLLDSRTTPSEAVVANRANNTGTNIAPLNTVTSSGGWTTILSAWAAPNDGYI KIFGNIVKLDASVTGGSFAIIGTALHGSFSGPAIGSSLRGFLPLRKGESVTIMAVNARDI VVTFYSKIVGGA >gi|301349808|gb|ADCQ01000042.1| GENE 44 35165 - 35536 202 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859548|gb|EFL82627.1| ## NR: gi|302859548|gb|EFL82627.1| hypothetical protein HMPREF0189_01122 [Burkholderiales bacterium 1_1_47] # 1 123 1 123 123 234 100.0 2e-60 MLKALVQLFAEKFLQSKKSWVSEQSAPIIHQGINIPCTSTTDFFTYTAPCNGWATSRCNS TTVSALEIQVENGQMALASVLNGNTAGAGICCYVKKGTQIKFLCRGGSTTDYSLWFYKAS SDF >gi|301349808|gb|ADCQ01000042.1| GENE 45 35525 - 35629 69 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYKLGFLFAVELAQQEAQYVFQHNAPPVKGLKV Prediction of potential genes in microbial genomes Time: Fri May 13 06:24:17 2011 Seq name: gi|301349807|gb|ADCQ01000043.1| Burkholderiales bacterium 1_1_47 cont1.43, whole genome shotgun sequence Length of sequence - 23323 bp Number of predicted genes - 26, with homology - 23 Number of transcription units - 6, operones - 2 average op.length - 11.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 95 - 154 4.0 1 1 Tu 1 . + CDS 339 - 1115 844 ## COG0731 Fe-S oxidoreductases + Prom 1131 - 1190 5.8 2 2 Tu 1 . + CDS 1218 - 1370 180 ## + Term 1424 - 1463 1.0 + Prom 1386 - 1445 2.2 3 3 Op 1 2/0.000 + CDS 1581 - 2333 608 ## COG0496 Predicted acid phosphatase + Term 2347 - 2378 -1.0 + Prom 2351 - 2410 3.9 4 3 Op 2 . + CDS 2447 - 3184 540 ## COG0739 Membrane proteins related to metalloendopeptidases 5 3 Op 3 . + CDS 3205 - 4656 1449 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 6 3 Op 4 . + CDS 4662 - 5204 491 ## gi|302859554|gb|EFL82633.1| conserved hypothetical protein 7 3 Op 5 . + CDS 5231 - 5851 642 ## gi|302859555|gb|EFL82634.1| hypothetical protein HMPREF0189_01129 8 3 Op 6 . + CDS 5862 - 6386 595 ## gi|302859556|gb|EFL82635.1| hypothetical protein HMPREF0189_01130 + Term 6506 - 6541 3.5 9 4 Tu 1 . - CDS 6350 - 6526 104 ## - Prom 6639 - 6698 2.5 + Prom 6483 - 6542 3.8 10 5 Op 1 11/0.000 + CDS 6564 - 6992 697 ## COG0105 Nucleoside diphosphate kinase 11 5 Op 2 . + CDS 7062 - 8231 1027 ## COG0820 Predicted Fe-S-cluster redox enzyme 12 5 Op 3 . + CDS 8224 - 9318 1254 ## Dbac_0990 transcriptional regulator, XRE family 13 5 Op 4 11/0.000 + CDS 9322 - 10554 1121 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 14 5 Op 5 12/0.000 + CDS 10554 - 11831 1594 ## COG0124 Histidyl-tRNA synthetase + Prom 11841 - 11900 2.2 15 5 Op 6 9/0.000 + CDS 11921 - 12556 800 ## COG2976 Uncharacterized protein conserved in bacteria 16 5 Op 7 7/0.000 + CDS 12560 - 13675 1226 ## COG1520 FOG: WD40-like repeat 17 5 Op 8 1/0.000 + CDS 13681 - 15012 1461 ## COG1160 Predicted GTPases + Term 15021 - 15052 2.1 + Prom 15082 - 15141 5.4 18 5 Op 9 16/0.000 + CDS 15332 - 15583 301 ## COG1923 Uncharacterized host factor I protein 19 5 Op 10 8/0.000 + CDS 15583 - 16746 725 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 + Prom 16798 - 16857 6.0 20 5 Op 11 21/0.000 + CDS 16922 - 18421 1524 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 21 5 Op 12 . + CDS 18432 - 19325 933 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 22 5 Op 13 . + CDS 19345 - 19536 176 ## 23 5 Op 14 4/0.000 + CDS 19548 - 20714 1220 ## COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis 24 5 Op 15 1/0.000 + CDS 20732 - 22024 1809 ## COG0104 Adenylosuccinate synthase 25 5 Op 16 . + CDS 22037 - 22564 544 ## COG2236 Predicted phosphoribosyltransferases + Term 22643 - 22711 31.2 + TRNA 22629 - 22697 43.2 # Arg TCG 0 0 + TRNA 22867 - 22953 76.5 # Leu CAG 0 0 26 6 Tu 1 . - CDS 23082 - 23321 342 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349807|gb|ADCQ01000043.1| GENE 1 339 - 1115 844 258 aa, chain + ## HITS:1 COG:Cj1244 KEGG:ns NR:ns ## COG: Cj1244 COG0731 # Protein_GI_number: 15792568 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductases # Organism: Campylobacter jejuni # 10 243 4 224 300 93 31.0 4e-19 MACILFPSPIFGPIHSRRLGTSLGINLLPAEAKVCSFDCVYCECGFNKDHDAKRKLPTRE EVRTALEKKLIYLQKTGVVPDVFTFAGNGEPTSHPDFDLIIDDTIELRDRYFPNAKISVL SNSTFLAREKVVKALAKVDNPIMKLDTVNADYIKRIDRPNAKYDVKGVIEKLKNMTVRPI IQTMFMKGEFEGQSVDNTTDEFVDPWIDVLEEIKPREVMIYTLDRDTPAAGLKKADKESL CKIRDKLERRGYRVMVSV >gi|301349807|gb|ADCQ01000043.1| GENE 2 1218 - 1370 180 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPESLPMKTRLLLAGASLQLISLAKKSEKKEKKQKVVAVSAGMTLSKATA >gi|301349807|gb|ADCQ01000043.1| GENE 3 1581 - 2333 608 250 aa, chain + ## HITS:1 COG:RSc1204 KEGG:ns NR:ns ## COG: RSc1204 COG0496 # Protein_GI_number: 17545923 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Ralstonia solanacearum # 1 244 1 248 251 318 60.0 7e-87 MNILISNDDGYLAPGIQELARRIRRFGNVTVVAPEQNHSGASNSLTLNRPLSVRQVQENV FFVNGTPSDCVHIALTGLLPQKPDIVLSGINCGQNMGDDVLYSGTVAAAMEGFLFGCPSF AFSQVHSGWSCLDSAAEVAEYIVDNFIKSPLPAPFLLNVNIPNTTIDQLSGLVVTRLGRR HAAQSVIEQVNPRGETIYWLGAAGDARDSTQGTDFWATSHNYVSVTPLQVDMTNYGMLDT VRTWCNSFQS >gi|301349807|gb|ADCQ01000043.1| GENE 4 2447 - 3184 540 245 aa, chain + ## HITS:1 COG:PA3623 KEGG:ns NR:ns ## COG: PA3623 COG0739 # Protein_GI_number: 15598819 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Pseudomonas aeruginosa # 2 245 30 297 297 134 38.0 2e-31 MVFASVIAGCSFTGGNAPITDGSATASVYTVKPGDTLYAISSRYGLDPAVVARENHLTNP SHLLVGQKLRLSVSSSTDANIRRVEANTKTQTSSSSSAKPSTSSSAAPAASASTTQTASS SSSVGSANGTYGWPASGKIIQNFGGLNKGIDIAGSEGEKVHAAVNGTVLFDGQVQGYGKV VMIRDKDGCVSVYGRVKSISVKQGDQVRKGQAIAVMGTTDVSPRVHFEIRKNGKPIDPLT MLQKR >gi|301349807|gb|ADCQ01000043.1| GENE 5 3205 - 4656 1449 483 aa, chain + ## HITS:1 COG:RSc1209 KEGG:ns NR:ns ## COG: RSc1209 COG2265 # Protein_GI_number: 17545928 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Ralstonia solanacearum # 15 449 9 448 450 496 55.0 1e-140 MARAKKERAKYVAVIESLDQEGRGVARRDGKVVFIEGALPGEKVEYEVYRSKPSFELGLT TEIYKESPLRVLPKCPHFGVKDGSCGGCAMQHLEAHAQVAMKQKVLMDALWHIGRVRPEQ VLAPIYGSAWRYRHRARLSVREVAKKGTVLVGFHEKRSSFIADMKSCEILPKRVSDLLVP LRELINSLSLRKKLPQIELAVTDEALALVLRVLEKLTADDEAKLRQFQKDYGVDFWYQPK GPDSIYPMDPENATRLKLHHRETGVEVVFRPTDFTQVNHRLNEVMVTRALRLLHLEPSSK VIDFFCGLGNFTLPLATRSAKVLGIEGSTELVDRARAGAKDNNLADKTEFEARNLFDWTL DDWDAVWNKLGGVDRVLIDPPREGAMALCRSLADTDKRPARLVYVSCNPATLARDAALLV REGGWKLLSAGVMNMFPHTAHVESIAVFEPGPKPEKIDEIDEIEIGGMTEEAEQEARSEE PKI >gi|301349807|gb|ADCQ01000043.1| GENE 6 4662 - 5204 491 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859554|gb|EFL82633.1| ## NR: gi|302859554|gb|EFL82633.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 180 1 180 180 273 100.0 3e-72 MTSLVFQIVILFVKILAELLVIILVPAFALKFFKKDLSFGLAFSASILMILLPVLTYVNN AELNNTMLPFASWGVGSVLTLSWMSWGLSTGAIISFLYAAYLIVESRARGTINLVLLFTG LGYLLNLVSQAAAPYLLFGSFGVNLAKEDLPFLCLSLVLALGVGIYVKYSEAAGKTFSNE >gi|301349807|gb|ADCQ01000043.1| GENE 7 5231 - 5851 642 206 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859555|gb|EFL82634.1| ## NR: gi|302859555|gb|EFL82634.1| hypothetical protein HMPREF0189_01129 [Burkholderiales bacterium 1_1_47] # 1 206 1 206 206 378 100.0 1e-103 MEESGVFEYWFAFLFALGFCVWFPTYVVKTKGQGISTWGLALCIVFLFIGLPLLSISLIR DVLPSLWLSFTSANYESPSISLLYGTIHKMATLDQLYVALAMICILVAIGQSIFASWLLY IRHNRESLVRALRIMWSSAFFIVLAAGILPLIILGSHGFTVAIPAGYTMGAYIAVLMVIT AYLRMSPQVADNYPISHQPKKDREKK >gi|301349807|gb|ADCQ01000043.1| GENE 8 5862 - 6386 595 174 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859556|gb|EFL82635.1| ## NR: gi|302859556|gb|EFL82635.1| hypothetical protein HMPREF0189_01130 [Burkholderiales bacterium 1_1_47] # 1 174 1 174 174 270 100.0 2e-71 MEFLMAVRTLIATTVMLFCSLWLARQLKIHRPRLPVSAVLILSLIMLFEPGMLAFLVWVV HDIASVNGGLMIHAYTFVKASVAIYLLFILPSIWFARSFYVESKLVTLKALRFAIILPVA FTAVVFIEVPKMIWQDRATELVSSGLETFIVVAVINLILLGLTYRFKPSNTPAP >gi|301349807|gb|ADCQ01000043.1| GENE 9 6350 - 6526 104 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRIPHFFLSKRQSVDFIMQGLRTKVLREAETPDYLVFRCARFPATGQGAGVFEGLKR >gi|301349807|gb|ADCQ01000043.1| GENE 10 6564 - 6992 697 142 aa, chain + ## HITS:1 COG:RSc1211 KEGG:ns NR:ns ## COG: RSc1211 COG0105 # Protein_GI_number: 17545930 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Ralstonia solanacearum # 1 140 1 140 141 205 80.0 2e-53 MAIERTLSIIKPDAVAKNVIGQIYSRFESNNLKIVASKMKWLSRQEAEAFYAVHRERPFF KDLVDFMVSGPVQIQVLEGENAIMKNRELMGATDPKKAAKGTIRADFAQSIDANAVHGSD SPETAAVEIAFFFPQMDIYAGR >gi|301349807|gb|ADCQ01000043.1| GENE 11 7062 - 8231 1027 389 aa, chain + ## HITS:1 COG:RSc1212 KEGG:ns NR:ns ## COG: RSc1212 COG0820 # Protein_GI_number: 17545931 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Ralstonia solanacearum # 10 365 5 360 383 518 68.0 1e-147 MTEEKLPQKVNLLGFDAEGLKKFCEDLGEKPFRAKQLERWIHRRGARDFSEMTDLAKSFR AKLEKVAEIRGPEIIRDKTAADGTRKWLLDVGSGNAVEMVYIPQDGRGTLCVSSQAGCAM NCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITDENERVISNVVMMGMGEPLQN LDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDK IMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKF NLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQLAGEIKDRT KLAEKRANREIIIKEIKSPAKATGGEKNV >gi|301349807|gb|ADCQ01000043.1| GENE 12 8224 - 9318 1254 364 aa, chain + ## HITS:1 COG:no KEGG:Dbac_0990 NR:ns ## KEGG: Dbac_0990 # Name: not_defined # Def: transcriptional regulator, XRE family # Organism: D.baculatum # Pathway: not_defined # 21 253 7 238 314 76 31.0 2e-12 MSENNINLEAKDQPSEATTYGGLLRIARENKELSIDQVSSQLRISPDQIEGLESDNYKVF PTPVYARAHLRSYARLLGVDEAKIISLFNAALAPDDKDPRTFIRRTTQELAPYHDAQPKN FVGKFIAGLLFLAVVIALGWIGYNYYMSQKTEKAAEVPQAEATQPAEAAAPASELAKTPE AVPVLVSNTTVEPAPQPAAAASAPAAAEAQTQADRDAALKEKLQKEAEAAAAAKVAEEKR LAEEAKKAAAAAALAAAAPSKLLTLTHNEAEGRWDLVVPKSANGTYKVTIGAEGGECWFG VYQDKKLVHNAQLKSGETRDYEVPYPFKVSVGNRAKGFVKVDGAPVDLNINNRATSTVFT LVQK >gi|301349807|gb|ADCQ01000043.1| GENE 13 9322 - 10554 1121 410 aa, chain + ## HITS:1 COG:RSc1215 KEGG:ns NR:ns ## COG: RSc1215 COG0821 # Protein_GI_number: 17545934 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Ralstonia solanacearum # 11 404 27 420 431 518 63.0 1e-147 MSSSQKEPMIVRWKDNIVEIGAGRPVVIQSMTNTDTADVESSTKQVLELAQAGSELVRLT VNTPAAAKAIAEIRRRLDEAGCFVPLVGDFHYNGHKLLNEYPECAEALSKYRINPGNVGK GDKQEENFRTMIELAKKYDKPVRIGVNWGSLDQDLLARMMSENQKLENPLDAKEVLREAL VRSAVENADRAVELGMKPSQVAISAKVSGVKDLIAVYRELEARCAYPLHLGLTEAGMGLK GTVSTTAALSVLLLENIGDTIRVSLTPEPGQSRTAEVELACEILQALGMRNFTPQVVSCP GCGRTTSCLFQELAKETQDFIKLRMPDWRKHNPGVENMNVAVMGCVVNGPGESRHANIGI SLPGSGEAPVSPVFIDGKKWGSLKGPKMSEEFHSLIEEYVQKNYQNAKEQ >gi|301349807|gb|ADCQ01000043.1| GENE 14 10554 - 11831 1594 425 aa, chain + ## HITS:1 COG:RSc1216 KEGG:ns NR:ns ## COG: RSc1216 COG0124 # Protein_GI_number: 17545935 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Ralstonia solanacearum # 3 421 1 423 432 525 60.0 1e-149 MAIEKIQAIRGMSDMLPEDAPLWHFFEKEASSLAKLYGYQHIRTPIVEQTRLFKRGIGEV TDIVEKEMYSFVDSLNGDELSLRPENTASVVRACIEHNLLYEGPKRLWYMGPMFRHERPQ RGRYRQFHQFGMEAMGFKGPDTDAEQLLMLNRLWKRLGIAPVRLELNCLGQLEDRKAYRE VLIQYFEAHKDILDEDASRRLYSNPLRILDTKNPDMQDLVNNAPKLYDSLGEESKQFLAD LEAILKAEGIDYVVNPRLVRGLDYYNLTVFEWVTDKLGAQGTICGGGRYDPLIGMLGGRD APACGFAMGIERVLELMKECGVKPESRECDVYVVWDKALYLNALSAAERLRDADIATIIH SGSMKFGNQMKRADASGALYALVIGADEAAAGKVGLKALRENLEGYGEQKTLTIDEAVSL LGQHV >gi|301349807|gb|ADCQ01000043.1| GENE 15 11921 - 12556 800 211 aa, chain + ## HITS:1 COG:RSc1217 KEGG:ns NR:ns ## COG: RSc1217 COG2976 # Protein_GI_number: 17545936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 188 1 187 211 114 38.0 2e-25 MAYDLEEQESLAEIKAWWEKWGNLILTVVTVACLCAAGFQGWRWYQMKESTDAGVLYAQM IQASNMKDEARVQAIAGRLHESYASTTYAGMGALLAAHNAETAGKYAEAEKALKWIVDSD KYPELKPLASVRLAGVYLDEGKYDQGLTVLNAVKDAKGEEVPVYDRMGDLYLAKGDVAAA RKSWEDALRHAPMTNPLVGVIEIKLNSLPKE >gi|301349807|gb|ADCQ01000043.1| GENE 16 12560 - 13675 1226 371 aa, chain + ## HITS:1 COG:RSc1218 KEGG:ns NR:ns ## COG: RSc1218 COG1520 # Protein_GI_number: 17545937 # Func_class: S Function unknown # Function: FOG: WD40-like repeat # Organism: Ralstonia solanacearum # 11 365 21 382 388 198 34.0 2e-50 MSTKLKIAAAVAAAVLLSACSSPKHEPMPLVKFTPSMEVTEVWSKGLSSAEGFLVPAVYD DMVFAAGGKTLTRLNARTGETEWSVSFNSPITGGVGSDGYVTAVGLWDGNLEVVDAEGKV SWEKKLTTELASPPVVSHGLVIARTMDTRVSAFEASSGELQWTYQRSQPALTVRLPTRML AHDNFLLVGQPNGHIVILDIASGKPMFEFQVAQAKGVTEVERLVDVVGAPAFSDNLVCAA AFQGAVTCVDSTNGQTRWTQKIDAVAGPAIDEDNVYAVSVNGEVQAFYRESGEQRWSNKT MLYRGLSAPVVFPGAVAVGDEDGYVHFLSPRTGEEMARVRLSGPIVTQAQPFSAGAIFQT SKGDVAYLSNR >gi|301349807|gb|ADCQ01000043.1| GENE 17 13681 - 15012 1461 443 aa, chain + ## HITS:1 COG:RSc1219 KEGG:ns NR:ns ## COG: RSc1219 COG1160 # Protein_GI_number: 17545938 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Ralstonia solanacearum # 1 441 1 444 447 578 65.0 1e-165 MVPVIALVGRPNVGKSTLFNRLTRSRDALVADFPGLTRDRHYGDGRIGDKPYLVIDTGGF EPIRTEGIVKEMTGQAQLAITESDVVLFLVDGRAGLTPQDQRIAQNLRESGKKTYLVVNK AEGLTETAKAEFYELALGEPYTISAAHGEGVKALMDLVLEPFPTEKEIDEEEDFKHKIKV AIAGRPNAGKSTLINALIGEDRLIAFDMPGTTRDAIEVEFQYKDRDYTLIDTAGLRRKGK VFEAIEKFSVIKTLQAIESSNVVVLLLDAHAGIAEQDANIAGYILESGRALVVGVNKWDS LDDYERRRVKEELERKLHFLRWAKIVYISALEKRGLHHLLNAVNDAHTAAFMKLSTPKLT RALIEATTRQLPPRAGGGRPKMRYAHQGGQNPPVIVVHGNALQDVPESYRRYLEGWFRDK FKLEGTPLRIEFRTNKNPYAQKA >gi|301349807|gb|ADCQ01000043.1| GENE 18 15332 - 15583 301 83 aa, chain + ## HITS:1 COG:RSc1220 KEGG:ns NR:ns ## COG: RSc1220 COG1923 # Protein_GI_number: 17545939 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Ralstonia solanacearum # 3 68 4 69 79 118 92.0 2e-27 MTKGQLLQDPFLNSLRKGRIPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAIS TVVPARAVPLGNEQQGTEEAETV >gi|301349807|gb|ADCQ01000043.1| GENE 19 15583 - 16746 725 387 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 28 361 25 366 425 283 49 6e-76 MDYQYQKGDETPGKVWLVSVIVGREIHRDAALELSELATSCGFQVAGLTEAKRDRPDPKT FLGSGKIEEIKSEALANGAKALIFDVALSPAQQRNIEKAVGIEVLDRTNLILEIFRQRAK TREGRLQVELARLTHLSTRLVRGWTHLERQRGGLSKTGGPGEKQIELDRRMIATRVKALR EQLKKLERQRNTQRKSRQRGEVLTVALVGYTNAGKSTLFNRLTRGGVYAADQLFATLDTT ARRCFVGGDVEVVLSDTVGFIRGLPHQLIEAFKSTLDEAAQADLLLHVVDSSTPAREEQM TEVNKVLEEIGAKDIPQLLVFNKIDLEGRSPFITCAEDGTPKAVGISAANGEGIDLLKDA IRQIAEKEPEEPQEAPDNEDWLAEFER >gi|301349807|gb|ADCQ01000043.1| GENE 20 16922 - 18421 1524 499 aa, chain + ## HITS:1 COG:RSc1222 KEGG:ns NR:ns ## COG: RSc1222 COG0330 # Protein_GI_number: 17545941 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Ralstonia solanacearum # 1 492 16 434 447 295 41.0 1e-79 MSLNDPRWGRKGSEDDSSQKENEIKEPPKETDEEPRKAEPSKNEMPGRFAQNNNDGDLEE LWKQFNDRLNSMLGTKGNQNRNAQKEEPSASSQTQNQKNEDYDFDEPPLRKDHEFKNQQN SFGNGGGNGNGGGNSFPQFKVPSSFSGGMAVSAIVIALAAWLASGFYIVPEGQNGVVTTF GRYTESTNAGFRWHLPYPIQDVALVDVSSVRKAEIGLRGGTQRLKEALMLTDDENIVDVM FNVQYRIKQGNGAEEFLFRTRDPMGAVVQTAESAMREVVGRKKMDSVLFESKQEIAEEVK KLMQEMLDRYHSGIQVLSVAIQNAQPPEQVQAAFNDAVKAGQDRERQINEGEAYANDVVP KARGLAERLRQEAEAYKSRVVSQAEGDANRFNQVYAQYEKAPKVTRDRMYVDTMQQIFNN TTKVMVDNKSSNNLLYLPLDQLAKRAAPAPAPAAAAAPVQPNVPASSAQQTHNLPGGDQP PLTPDASQPTSRLLSRTLR >gi|301349807|gb|ADCQ01000043.1| GENE 21 18432 - 19325 933 297 aa, chain + ## HITS:1 COG:RSc1223 KEGG:ns NR:ns ## COG: RSc1223 COG0330 # Protein_GI_number: 17545942 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Ralstonia solanacearum # 1 293 1 293 304 301 50.0 1e-81 MKKLLSLVIVILFGALLARTCLYTVNEREYALVFMLGELKSVVSTPGLHVKLPSPLQNVV YLDKRILTIDTPAADLVQTSEKKNLMIDSYVKWRINDPRRYWVSFQGSERAADDRMSALL RDVLNQVVNRRTVNDITSSDRARAMAEISEALQKRVSDLGIEVVDVRLKRVDFTPEISES VYRRMEAERKRVASEERSKGAAEAEKIKADADRQRTVVLAEAYRDAQNIKGSGDAQANEL YAKAFSKDPEFAKFYRSLDAYRQSFNKPQDMMVVDPSSEFFDYLKNSRGEAQANKQP >gi|301349807|gb|ADCQ01000043.1| GENE 22 19345 - 19536 176 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAFLYVLGFCFVLEGLLPMLAPDLWKRAVRFISRFPSEKIRYIGLESVVLGLVLVWAGS LLF >gi|301349807|gb|ADCQ01000043.1| GENE 23 19548 - 20714 1220 388 aa, chain + ## HITS:1 COG:RSc1225 KEGG:ns NR:ns ## COG: RSc1225 COG3705 # Protein_GI_number: 17545944 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase involved in histidine biosynthesis # Organism: Ralstonia solanacearum # 1 387 1 385 386 313 45.0 4e-85 MSVWLLPENIADMLPREARAIEHLRSSFLKLVTSHGFEVVRPPLVEYVDSLLTGTGGDLD LRTFKIVDQVTGKTMGIRADMTPQVARIDAHILNRSGVSRLCYVGSVLHARPLHPLASRQ PYLAGVEMFGSSSVESEREVICLGIESLRQFGLENIFLDLGHTGVVKAILDSDPVSEVVQ DQILFALSHKDRSALEELRGVLKEKTVDDLIRLTMLFGSEDVLNQVIEEFSDYPEIPEIL ESVRRLGRESGADIVSYDFADVAGYNYHTGVTFSVNIPGRYQPILRGGRYDDIGERFGRK RPAVGFTLYLREIIAVMDTKRPYAILAPNRLDDAALQSRIRELRENGDIVIEKLPEDNVA SLEESFRLDEELVCINGVWTVAARTSNR >gi|301349807|gb|ADCQ01000043.1| GENE 24 20732 - 22024 1809 430 aa, chain + ## HITS:1 COG:HI1633 KEGG:ns NR:ns ## COG: HI1633 COG0104 # Protein_GI_number: 16273522 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Haemophilus influenzae # 1 429 1 430 432 552 60.0 1e-157 MSKNVVVVGAQWGDEGKGKIVDWLTESVQGVVRFNGGHNAGHTLVINGQKTVLRLIPSGV MHPHVKCYIGNGAVVSPEAMLKEIDDLKAHGMDAEDRIFVSGQCPLVLPYHIALDHAREN ALGDKKIGTTGRGIGPAYEDKIARRAVHVRDLAEPKVFAEKVRENCKLINFLLANYYNSE PVDVEKMIEDTLAMAPRIVPKIRDISHILNTKMKEGEQFLYEGAQGTMLDIDHGTYPFVT SSNTVAGFASPGSGVGPQKLNYILGITKAYCTRVGSGPFPTELFDEVGKTIAKKGNEFGA VTGRPRRCGWFDGAALRRAVEWNGLSGLAVMKLDVLDGFETVRLGVGYEYKGERIDIMPV GAEEVAQCKVIYEDFPGWKEPTFGITKWEDLPVNAQKYLTRLSEVAGCPIAVVSTGPDRA QTILLHNPFE >gi|301349807|gb|ADCQ01000043.1| GENE 25 22037 - 22564 544 175 aa, chain + ## HITS:1 COG:RSc1227 KEGG:ns NR:ns ## COG: RSc1227 COG2236 # Protein_GI_number: 17545946 # Func_class: R General function prediction only # Function: Predicted phosphoribosyltransferases # Organism: Ralstonia solanacearum # 4 169 11 175 193 222 64.0 3e-58 MKDLHVSWEEYRRLIETLAFNVYDSGWKFDSLLCLARGGLRPGDILSRIFDMPLNILSTS SYREAAGTIQGSLDIGKYIASSRPDSLKGRVLLVDDLVDSGLTLKKVVEHLQNNYPGVTE VRTAVLWWKGCSQVEPDYYVEYLGDNPWIHQPFEEYDTMRLGQLVAKVEGKRKPE >gi|301349807|gb|ADCQ01000043.1| GENE 26 23082 - 23321 342 79 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 79 517 595 595 151 93.0 1e-35 KKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGPETP EEVPEEPEIEPLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 06:25:47 2011 Seq name: gi|301349806|gb|ADCQ01000044.1| Burkholderiales bacterium 1_1_47 cont1.44, whole genome shotgun sequence Length of sequence - 44809 bp Number of predicted genes - 69, with homology - 64 Number of transcription units - 24, operones - 17 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 190 212 ## gi|302858714|gb|EFL81821.1| putative transposase, IS4 - Prom 210 - 269 9.3 2 2 Tu 1 . + CDS 953 - 1453 129 ## COG0582 Integrase + Term 1629 - 1674 0.5 - Term 1326 - 1384 3.6 3 3 Op 1 . - CDS 1437 - 1712 186 ## gi|302859574|gb|EFL82653.1| conserved hypothetical protein 4 3 Op 2 . - CDS 1709 - 2023 332 ## gi|302859575|gb|EFL82654.1| conserved hypothetical protein 5 3 Op 3 . - CDS 2010 - 2198 269 ## gi|302859576|gb|EFL82655.1| hypothetical protein HMPREF0189_01150 6 3 Op 4 . - CDS 2198 - 2677 356 ## PMI0894 DNA N-4 cytosine methyltransferase - Prom 2754 - 2813 1.6 - Term 2804 - 2840 1.3 7 4 Op 1 . - CDS 2854 - 3258 417 ## gi|302859578|gb|EFL82657.1| putative DNA-directed RNA polymerase subunit beta' - Term 3266 - 3291 -0.5 8 4 Op 2 . - CDS 3295 - 3522 228 ## gi|302859579|gb|EFL82658.1| hypothetical protein HMPREF0189_01153 9 4 Op 3 . - CDS 3519 - 3920 291 ## gi|302859580|gb|EFL82659.1| hypothetical protein HMPREF0189_01154 10 4 Op 4 . - CDS 3930 - 4214 123 ## gi|302859581|gb|EFL82660.1| hypothetical protein HMPREF0189_01155 - Term 4220 - 4250 2.1 11 4 Op 5 . - CDS 4258 - 5106 768 ## COG3723 Recombinational DNA repair protein (RecE pathway) - Prom 5128 - 5187 6.3 - Term 5157 - 5185 1.0 12 5 Tu 1 . - CDS 5192 - 5746 261 ## AB57_2670 hypothetical protein - Prom 5790 - 5849 2.5 13 6 Op 1 . - CDS 5957 - 6988 809 ## COG5377 Phage-related protein, predicted endonuclease 14 6 Op 2 . - CDS 6985 - 7212 145 ## gi|302859511|gb|EFL82590.1| conserved hypothetical protein 15 6 Op 3 . - CDS 7203 - 7436 223 ## gi|302859586|gb|EFL82665.1| conserved hypothetical protein 16 6 Op 4 . - CDS 7427 - 7570 133 ## - Term 7582 - 7644 0.1 17 6 Op 5 . - CDS 7659 - 8531 619 ## COG3617 Prophage antirepressor - Prom 8694 - 8753 2.2 - Term 8732 - 8759 -0.1 18 7 Tu 1 . - CDS 8818 - 9114 295 ## gi|302859588|gb|EFL82667.1| hypothetical protein HMPREF0189_01162 - Prom 9227 - 9286 3.1 - Term 9250 - 9284 2.3 19 8 Tu 1 . - CDS 9322 - 9597 205 ## gi|302859589|gb|EFL82668.1| hypothetical protein HMPREF0189_01163 20 9 Tu 1 . - CDS 9733 - 9999 106 ## gi|302859590|gb|EFL82669.1| conserved hypothetical protein 21 10 Op 1 . - CDS 10148 - 10342 203 ## gi|302859591|gb|EFL82670.1| hypothetical protein HMPREF0189_01165 22 10 Op 2 . - CDS 10345 - 10617 219 ## gi|302859592|gb|EFL82671.1| hypothetical protein HMPREF0189_01166 - Term 11218 - 11265 3.0 23 11 Tu 1 . - CDS 11285 - 12250 487 ## SARI_02670 hypothetical protein - Prom 12277 - 12336 7.0 - Term 12332 - 12359 -0.9 24 12 Op 1 . - CDS 12396 - 12683 263 ## gi|302859594|gb|EFL82673.1| putative heat-inducible transcription repressor HrcA 25 12 Op 2 . - CDS 12689 - 13036 171 ## gi|302859595|gb|EFL82674.1| hypothetical protein HMPREF0189_01169 - Prom 13061 - 13120 1.7 26 12 Op 3 . - CDS 13122 - 13814 375 ## COG2932 Predicted transcriptional regulator - Prom 13865 - 13924 5.6 + Prom 13818 - 13877 3.2 27 13 Op 1 . + CDS 13897 - 14151 138 ## gi|302859597|gb|EFL82676.1| conserved hypothetical protein 28 13 Op 2 . + CDS 14168 - 15328 420 ## Daci_1931 hypothetical protein 29 13 Op 3 . + CDS 15328 - 15765 419 ## gi|302859599|gb|EFL82678.1| hypothetical protein HMPREF0189_01173 30 13 Op 4 . + CDS 15734 - 16798 353 ## HEAR3034 unknown prophage; putative replicative DNA helicase (partial) 31 14 Op 1 . + CDS 16925 - 17146 213 ## gi|302859601|gb|EFL82680.1| hypothetical protein HMPREF0189_01175 32 14 Op 2 . + CDS 17136 - 17309 194 ## gi|302859602|gb|EFL82681.1| conserved hypothetical protein 33 14 Op 3 . + CDS 17306 - 17488 226 ## gi|302859603|gb|EFL82682.1| hypothetical protein HMPREF0189_01177 + Term 17511 - 17545 -0.6 34 15 Op 1 . + CDS 17645 - 18001 225 ## ECIAI39_2692 conserved hypothetical protein from phage origin 35 15 Op 2 . + CDS 17985 - 18194 214 ## gi|302859605|gb|EFL82684.1| hypothetical protein HMPREF0189_01179 36 15 Op 3 . + CDS 18191 - 18676 298 ## gi|302859606|gb|EFL82685.1| conserved hypothetical protein + Term 18685 - 18736 7.0 + Prom 18698 - 18757 4.1 37 16 Op 1 . + CDS 18784 - 19488 248 ## PAU_01443 hypothetical protein + Prom 19500 - 19559 1.7 38 16 Op 2 . + CDS 19646 - 19849 83 ## + Term 19951 - 19990 6.5 39 17 Op 1 . + CDS 19991 - 20569 390 ## COG1475 Predicted transcriptional regulators 40 17 Op 2 . + CDS 20589 - 21038 237 ## NTHI1526 hypothetical protein 41 18 Op 1 2/0.000 + CDS 21682 - 22449 209 ## COG5362 Phage-related terminase 42 18 Op 2 . + CDS 22455 - 24032 995 ## COG3567 Uncharacterized protein conserved in bacteria 43 18 Op 3 . + CDS 24032 - 24928 417 ## KPK_4141 putative phage head morphogenesis protein 44 18 Op 4 . + CDS 24949 - 26400 1196 ## COG3566 Uncharacterized protein conserved in bacteria 45 18 Op 5 . + CDS 26416 - 26928 705 ## gi|302859614|gb|EFL82693.1| conserved hypothetical protein 46 18 Op 6 . + CDS 26942 - 28015 1130 ## KPK_4138 hypothetical protein + Term 28035 - 28068 6.1 47 19 Op 1 . + CDS 28077 - 28550 487 ## gi|302859616|gb|EFL82695.1| conserved hypothetical protein 48 19 Op 2 . + CDS 28555 - 28983 477 ## KPK_4136 hypothetical protein 49 19 Op 3 . + CDS 29076 - 29555 295 ## gi|302859618|gb|EFL82697.1| hypothetical protein HMPREF0189_01192 50 19 Op 4 . + CDS 29555 - 30037 301 ## gi|302859619|gb|EFL82698.1| conserved hypothetical protein 51 19 Op 5 . + CDS 29982 - 30554 297 ## gi|302859620|gb|EFL82699.1| hypothetical protein HMPREF0189_01194 + Prom 31320 - 31379 3.0 52 20 Op 1 . + CDS 31507 - 31620 186 ## + Term 31626 - 31670 2.2 + Prom 31622 - 31681 3.0 53 20 Op 2 . + CDS 31703 - 33199 1194 ## ECL_03555 hypothetical protein + Term 33216 - 33258 6.8 54 21 Op 1 . + CDS 33264 - 33701 376 ## SG0757 hypothetical protein 55 21 Op 2 . + CDS 33702 - 34100 231 ## gi|302859625|gb|EFL82704.1| hypothetical protein HMPREF0189_01199 + Term 34118 - 34160 7.2 56 22 Op 1 . + CDS 34295 - 35992 969 ## EpC_17700 phage related-protein 57 22 Op 2 . + CDS 36013 - 36525 91 ## gi|302859627|gb|EFL82706.1| conserved hypothetical protein + Prom 36527 - 36586 1.6 58 23 Op 1 . + CDS 36663 - 36878 229 ## gi|302859628|gb|EFL82707.1| conserved hypothetical protein 59 23 Op 2 . + CDS 36865 - 37725 191 ## KPK_4125 hypothetical protein 60 23 Op 3 . + CDS 37726 - 38436 424 ## bglu_1g21230 phage P2 baseplate assembly protein gpV 61 23 Op 4 . + CDS 38453 - 38824 270 ## gi|302859631|gb|EFL82710.1| hypothetical protein HMPREF0189_01205 62 23 Op 5 . + CDS 38831 - 40045 830 ## COG3299 Uncharacterized homolog of phage Mu protein gp47 63 23 Op 6 . + CDS 40048 - 40677 288 ## gi|302859633|gb|EFL82712.1| conserved hypothetical protein 64 23 Op 7 . + CDS 40674 - 41720 449 ## Haur_1990 tail collar domain-containing protein 65 23 Op 8 . + CDS 41727 - 42728 387 ## gi|302859635|gb|EFL82714.1| putative cell surface SD repeat protein 66 23 Op 9 . + CDS 42749 - 43363 354 ## gi|302859636|gb|EFL82715.1| conserved hypothetical protein + Prom 43379 - 43438 4.1 67 24 Op 1 . + CDS 43490 - 43780 118 ## 68 24 Op 2 . + CDS 43816 - 44223 129 ## 69 24 Op 3 . + CDS 44216 - 44563 252 ## gi|302859637|gb|EFL82716.1| hypothetical protein HMPREF0189_01211 + Term 44706 - 44750 2.6 Predicted protein(s) >gi|301349806|gb|ADCQ01000044.1| GENE 1 1 - 190 212 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858714|gb|EFL81821.1| ## NR: gi|302858714|gb|EFL81821.1| putative transposase, IS4 [Burkholderiales bacterium 1_1_47] # 1 63 1 63 190 126 100.0 4e-28 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFDEAF LQE >gi|301349806|gb|ADCQ01000044.1| GENE 2 953 - 1453 129 166 aa, chain + ## HITS:1 COG:RSc1655 KEGG:ns NR:ns ## COG: RSc1655 COG0582 # Protein_GI_number: 17546374 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Ralstonia solanacearum # 2 165 191 333 334 82 38.0 4e-16 MQLAVAAFLFSCQTGMRAGELLKIEYSWIDDNVLHVPAEATKTLSRRDVALSARAREILK LVMELEYEPRIFGGLNDHNRDTLFRKVRDRAGLGPEYDSQNRLIKEGLNFHDGRATFATW AASPDPETGAPRLDVLALARQTGHKDLKMLQRYYRASAEEIAKRLK >gi|301349806|gb|ADCQ01000044.1| GENE 3 1437 - 1712 186 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859574|gb|EFL82653.1| ## NR: gi|302859574|gb|EFL82653.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 150 100.0 2e-35 MTDIDYDKLSSMVAEKLAQKANKLTLSKSEVEMRLGFAPGSTAARQVMKDPKFPKPDAFS ENGRDRWYTKDVDDYMESKRHARAKLAISAA >gi|301349806|gb|ADCQ01000044.1| GENE 4 1709 - 2023 332 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859575|gb|EFL82654.1| ## NR: gi|302859575|gb|EFL82654.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 104 1 104 104 192 100.0 4e-48 MKLTNAVEFYSCLLMIMDHYGYDHQVYEKLPEEVDELQEAFDAYFDKPSPEHWHHVIEEC ADVHIMLEQFQMLITPEDKKEFDKICMDKLHREIGRIEASGGRK >gi|301349806|gb|ADCQ01000044.1| GENE 5 2010 - 2198 269 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859576|gb|EFL82655.1| ## NR: gi|302859576|gb|EFL82655.1| hypothetical protein HMPREF0189_01150 [Burkholderiales bacterium 1_1_47] # 1 62 2 63 63 94 100.0 2e-18 MGKIEITKDEALLMIRLVYFYLDRACCMEKRDNKEIGASMELKNKLKEQVNRVLQEENNE AN >gi|301349806|gb|ADCQ01000044.1| GENE 6 2198 - 2677 356 159 aa, chain - ## HITS:1 COG:no KEGG:PMI0894 NR:ns ## KEGG: PMI0894 # Name: not_defined # Def: DNA N-4 cytosine methyltransferase # Organism: P.mirabilis # Pathway: not_defined # 1 134 1 135 158 137 51.0 8e-32 MKPILDPMCGSRMFYFDKNNKSVLFGDIRDETHWTRQYKKLEIHPDQIMDARDLEFPDNS FHLVILDPPHLINCGKTSDMAKSYGYLEKAWHEDMKRIFNEAWRVLRPNGTLIFKWADKD VSLAELLYVLEREPVFGDKKPAANKAGTNRFFLVFFKDE >gi|301349806|gb|ADCQ01000044.1| GENE 7 2854 - 3258 417 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859578|gb|EFL82657.1| ## NR: gi|302859578|gb|EFL82657.1| putative DNA-directed RNA polymerase subunit beta' [Burkholderiales bacterium 1_1_47] # 1 134 1 134 134 258 100.0 1e-67 MTTRIYGTSDDLIEFEGDIYDEIGAYEAQDKGILLSDGTVLECSYPKTPDLGVWGFKLIR AGSLFDRIEECNDEDAEVYSDVVFFKDGLTDFWEILPEHKQKALDLLNKYNIEELITVSP HEQLMQCMYDEQEY >gi|301349806|gb|ADCQ01000044.1| GENE 8 3295 - 3522 228 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859579|gb|EFL82658.1| ## NR: gi|302859579|gb|EFL82658.1| hypothetical protein HMPREF0189_01153 [Burkholderiales bacterium 1_1_47] # 1 75 1 75 75 130 100.0 3e-29 MKLELENTDDPRNHHFDELDQIIVLLNDPETGEQFYEILTYVNDDFVFGGPNSDPMDFDA PFPGPELMRWEKIDI >gi|301349806|gb|ADCQ01000044.1| GENE 9 3519 - 3920 291 133 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859580|gb|EFL82659.1| ## NR: gi|302859580|gb|EFL82659.1| hypothetical protein HMPREF0189_01154 [Burkholderiales bacterium 1_1_47] # 1 133 1 133 133 251 100.0 8e-66 MWKIKDPELKAKVNQFFTDKEIHEEFEKNTDLYNYFRLSTVNKKGLCVTITVKKELVEFV PEYQENDWNPYPTVTPPVDGKKWLTQDEDGNLAIRSFARSFEEGIDYSWEDHDDRLIVAF RSLPAPYQPETNK >gi|301349806|gb|ADCQ01000044.1| GENE 10 3930 - 4214 123 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859581|gb|EFL82660.1| ## NR: gi|302859581|gb|EFL82660.1| hypothetical protein HMPREF0189_01155 [Burkholderiales bacterium 1_1_47] # 1 94 1 94 94 195 100.0 9e-49 MQFEFIDYSGCFPNLCAGKLTFKVDGKQYAGYVDMISGGDVWFDDHWNEHVEEGPWDDLS GPLLKKNPELLEHKTELLKMINENVPHGCCGGCV >gi|301349806|gb|ADCQ01000044.1| GENE 11 4258 - 5106 768 282 aa, chain - ## HITS:1 COG:ECs1933 KEGG:ns NR:ns ## COG: ECs1933 COG3723 # Protein_GI_number: 15831187 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecE pathway) # Organism: Escherichia coli O157:H7 # 38 236 39 244 269 222 56.0 5e-58 MSTSDQLAAAVGAPSAPVAKPKTKAPVIVQQVLSDQFKKQLALAVPKHLSADRMARIAAT EVRKTPALLNTTPASFLGAVMQSAQLGLEPGSALGQAYLVPYGNQCQLILGYRGMIDLAR RSGQVLSLNAYAVREGDEFNYQLGLHPDIHHVPSCEADRVKKPITFVYAVATLRGGGYQF EVMSRAEVEAVKAKAKSKNIWNNYFEEMAKKTVIRRLFKYLPVSIEALQITNVDAKREAG EEVKPEDVIDINAVSVDDFKDIEEGEIVQEQSTTEKSSDVQQ >gi|301349806|gb|ADCQ01000044.1| GENE 12 5192 - 5746 261 184 aa, chain - ## HITS:1 COG:no KEGG:AB57_2670 NR:ns ## KEGG: AB57_2670 # Name: not_defined # Def: hypothetical protein # Organism: A.baumannii_AB0057 # Pathway: not_defined # 47 178 30 163 173 75 31.0 1e-12 MNPDPELLRWTDWIPVIQSVFMFLTVVCSAITVIVAVSKQKTDKESSVKAIEKAEEQARK RAIIDLLIAQKSDPNYIKDSKIVRALKSDNSSCLANEINSPDSAKKDAILSVLNQLEFIA VGIRIGVFDEELYKQLCCHSVLKTWEAASGFVYELRKQTQIKTLYQDLEHLADRWENDPI KQIH >gi|301349806|gb|ADCQ01000044.1| GENE 13 5957 - 6988 809 343 aa, chain - ## HITS:1 COG:BS_yqaJ KEGG:ns NR:ns ## COG: BS_yqaJ COG5377 # Protein_GI_number: 16079682 # Func_class: L Replication, recombination and repair # Function: Phage-related protein, predicted endonuclease # Organism: Bacillus subtilis # 6 337 17 311 319 130 31.0 4e-30 MTNEQRAAWLEGRRTGIGGSDVAAVLGLNPWKTPLDVWNDKLGLSEDKGMSEPAYWGTVL EDTVAKEFQLRTGKKVQKVSHQFADPETPWAIANIDRAIINPEIAGKVRPLLKVEEIEKY ADITGVERIINTDVAFEAKTANAFTADLWGPSQELEIQQNNIRTEHVIPLYYETQIQWYC GILRLRGMYLAVLIGGSDFRMYWIDARPDVFQVIKEKCSHFWNEKVLKKIPPDPINIDDV LQLYGKSNGKAVEAQGELAIDYGEYARIAGEIEKLKKQQDALKTRIAISMKDNEILTLDG KKVLTYKTQTSKRFDSDSFREDHLDDYYDYLKESSTRVMRVCA >gi|301349806|gb|ADCQ01000044.1| GENE 14 6985 - 7212 145 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859511|gb|EFL82590.1| ## NR: gi|302859511|gb|EFL82590.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 75 1 75 75 92 96.0 5e-18 MAVITDAERKKQRNRELKREYYAKNKEKRVAQSKERYRKRREEELALRNDKTPILPQTPF SALFTDFFIDRNPKK >gi|301349806|gb|ADCQ01000044.1| GENE 15 7203 - 7436 223 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859586|gb|EFL82665.1| ## NR: gi|302859586|gb|EFL82665.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 77 1 77 77 116 100.0 4e-25 MRITPRTCPGPGDLWQLSWQEEKREAEYERLLEKFFEEYIPRYCDERINQLAENGEDERH PEIEPIFDEYLEENEWR >gi|301349806|gb|ADCQ01000044.1| GENE 16 7427 - 7570 133 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKKLLTAKNADRDNYCLLFVAMALILTIACVALAADAIQRSFGICG >gi|301349806|gb|ADCQ01000044.1| GENE 17 7659 - 8531 619 290 aa, chain - ## HITS:1 COG:XF2524_1 KEGG:ns NR:ns ## COG: XF2524_1 COG3617 # Protein_GI_number: 15839114 # Func_class: K Transcription # Function: Prophage antirepressor # Organism: Xylella fastidiosa 9a5c # 2 109 278 387 415 112 51.0 1e-24 MSNALSFTFERGSLTVLGDDLSPLFVAKQVCSFLGFKDPINAVKAHVDPEDLCKVEMLDR LNRKQLVNCVNESGLYALIFGSKLPKAKQFKRWVTNEVLPAIRKQGCYSAQEQDNTLISN EQQYELSSRVMRKTHALFGNKNYSFVYRALKRRFRIPRYTCLLQRDFETALAFVDGLKVS DFNFPDVTEREVPLQNYVVQYPSFTISSSGSEPLPAIPAIPVNKHYITDNELQAIKSLIY YFDDLFKPQIQWASKEAYRQGRQDASRFYDVWHEPLWFISRMRQLVSRNS >gi|301349806|gb|ADCQ01000044.1| GENE 18 8818 - 9114 295 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859588|gb|EFL82667.1| ## NR: gi|302859588|gb|EFL82667.1| hypothetical protein HMPREF0189_01162 [Burkholderiales bacterium 1_1_47] # 1 98 8 105 105 179 100.0 6e-44 MILSVNEKNQLFTNVIDDILKERGSAIYLTDALAYAERAVVSALLSGKSEITLDLGHVVQ TAEAQRETKALFKEYAADFICGLGMEAIDKDIYPDVKN >gi|301349806|gb|ADCQ01000044.1| GENE 19 9322 - 9597 205 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859589|gb|EFL82668.1| ## NR: gi|302859589|gb|EFL82668.1| hypothetical protein HMPREF0189_01163 [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 152 100.0 6e-36 MLATYERKKVTEYTSFKNEFRVFYKDEYVCDLLKVDRKKWMFSAFRPTHKSKGLQDFLYC NSYSRTFQTEKEATDYLENFLTNYEVGERLA >gi|301349806|gb|ADCQ01000044.1| GENE 20 9733 - 9999 106 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859590|gb|EFL82669.1| ## NR: gi|302859590|gb|EFL82669.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 88 48 135 135 172 98.0 6e-42 MPDETLKRLFPASPQAQEFIDFVIDALNKNGDFSADGLILSGFKLGRPFDTYCDTKLDLI EQAIKFSSSFVTFEEYLAWSKSKAPACR >gi|301349806|gb|ADCQ01000044.1| GENE 21 10148 - 10342 203 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859591|gb|EFL82670.1| ## NR: gi|302859591|gb|EFL82670.1| hypothetical protein HMPREF0189_01165 [Burkholderiales bacterium 1_1_47] # 1 64 1 64 64 107 100.0 2e-22 MEKPKKLTKKQRLELLEQKRAAKAYCDELAKRNEFDYGNCWDYACEFGRGWEVDEIYNYL RRYC >gi|301349806|gb|ADCQ01000044.1| GENE 22 10345 - 10617 219 90 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859592|gb|EFL82671.1| ## NR: gi|302859592|gb|EFL82671.1| hypothetical protein HMPREF0189_01166 [Burkholderiales bacterium 1_1_47] # 1 90 1 90 90 163 100.0 3e-39 MLLKVKRVVPQAYEIYYKGQNIISLIRPKPNDWRFSGFFMKEQDKVNDLLLANVFGLSFR TKRRALIELEVIFARFEALQTELTGRLTRR >gi|301349806|gb|ADCQ01000044.1| GENE 23 11285 - 12250 487 321 aa, chain - ## HITS:1 COG:no KEGG:SARI_02670 NR:ns ## KEGG: SARI_02670 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 5 311 22 345 359 139 35.0 2e-31 MDNKTKQSKGGLERAKKLSPERRSEIARDAALVKSGGFKALHKGNFKEVIGVDIPCYVLN DSNHTAVMSQRGIAEALGFATGGGTAIKKFLSSQSMLPYIGSELSKKTDQPIVFKLDQTG SGRKAYGYDVTILIDICQAIIRANDNNQLKSNQAFLVKNASIILQASAKLGIRELVYKLA GYNSTKAAVIAAFREYILEEARKWSKEFPDDLYAEWQRLYDIPVPVRGRNWEHYHLTLKF IYLPLAKSNGKLLALLKEAKKESKGKKYDKLHQFLNEIGLTALRAHIWQVVGIAKTSQSV EEYERRFSLAFGGQLPFEFDE >gi|301349806|gb|ADCQ01000044.1| GENE 24 12396 - 12683 263 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859594|gb|EFL82673.1| ## NR: gi|302859594|gb|EFL82673.1| putative heat-inducible transcription repressor HrcA [Burkholderiales bacterium 1_1_47] # 1 95 1 95 95 175 100.0 6e-43 MEADQGNKIKLAQRDQDSVGVMMGHETRLGYIEGKLESFATKADIKDLEGKIALIEERLQ TKIKDEINKQTKWIIVGIWVPFLLVILGWVASHFR >gi|301349806|gb|ADCQ01000044.1| GENE 25 12689 - 13036 171 115 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859595|gb|EFL82674.1| ## NR: gi|302859595|gb|EFL82674.1| hypothetical protein HMPREF0189_01169 [Burkholderiales bacterium 1_1_47] # 49 115 1 67 67 133 98.0 4e-30 MTEQFLSCDAPLVVEYLNAINRSSCPWCKSNDWSMITESSAMCVGEPALEMANSVRYTTP PVTEGVKDAKFILKPSDEPPSVYMRLRCNVCSCELRFDYFQLIKRAKAWKNNQER >gi|301349806|gb|ADCQ01000044.1| GENE 26 13122 - 13814 375 230 aa, chain - ## HITS:1 COG:NMB1078 KEGG:ns NR:ns ## COG: NMB1078 COG2932 # Protein_GI_number: 15678006 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Neisseria meningitidis MC58 # 93 220 15 138 146 74 34.0 1e-13 MKTVAEIRRDNLNTLVSRAGSLAELNEQLGRKRNHPSLGQIRNRSDRGNGTFYEMGDKLA RDIEEKLGLSYGWMDTNHTPDDWPDDNIINLKRINIQACCGSAGIQNYEDDAFVEQIQVS RPWFQENISKIREQGYELITASGDSMEPTFRNGDLIVVDRQDRDLKRDGVFCVLVDGDLY VKRVQRIPGAVLFISDNSLYRPFEIPIKEVEFRLQVLGRVVNSMNLKRYD >gi|301349806|gb|ADCQ01000044.1| GENE 27 13897 - 14151 138 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859597|gb|EFL82676.1| ## NR: gi|302859597|gb|EFL82676.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 5 84 1 80 80 158 100.0 1e-37 MVVFMKLAEFFELTGAPSKKALADYLGVPASNISNWIRNERPIPSRHCAKIEQFTKGAVK MEELRPDFPWDDAKRVIADRISSV >gi|301349806|gb|ADCQ01000044.1| GENE 28 14168 - 15328 420 386 aa, chain + ## HITS:1 COG:no KEGG:Daci_1931 NR:ns ## KEGG: Daci_1931 # Name: not_defined # Def: hypothetical protein # Organism: D.acidovorans # Pathway: not_defined # 1 183 1 151 258 106 33.0 2e-21 MRKYSSITPKFWIGRTGRKLRGDISAKLVAAYLLSCPNNDMTGVFYCPLCQISAETGLPL EAPSVPLPSPFQGPLKGIREALETLEREDFAIYDYESEYVFVKKMALFQIAPELKPTDKR VTGIRTAIESMPDNFKHLFIKEYNECFNLGFKDIPSPEIQEFGVQTQEEEELPSSPIEAP SKALRCQEQEQEQEQETYTRTEKNEKQPEVAESFAGRVCEKPASLRTEAIEEELPLEEPK EQETSVSKKQIVEPKPKREAKDQRLQKPEELTDEFWQDFLAYRKQKKAPVTERVVSLLRK ESKTAGWKLEEVINEMMVRNWTGFKADWVKDDWKDPNAHWVTAAEYNKELPPVTYSTGAK NKFVEKLHAGMSAYDIKDLPNNKEQK >gi|301349806|gb|ADCQ01000044.1| GENE 29 15328 - 15765 419 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859599|gb|EFL82678.1| ## NR: gi|302859599|gb|EFL82678.1| hypothetical protein HMPREF0189_01173 [Burkholderiales bacterium 1_1_47] # 1 145 2 146 146 274 100.0 1e-72 MFAAAAVVRDDQGRTFYEHPDAFTTTQLVFFPRLTDSELALYQADAIYEDEIEVLPRRRP QVPTVLFSFCDEPNHIKAEFLRGKTVLIDFIDVDDTPELRETVRRWMLEIPKSLPAAVVV SVMFKNKQLIAWKFDYESKKYKRFA >gi|301349806|gb|ADCQ01000044.1| GENE 30 15734 - 16798 353 354 aa, chain + ## HITS:1 COG:no KEGG:HEAR3034 NR:ns ## KEGG: HEAR3034 # Name: not_defined # Def: unknown prophage; putative replicative DNA helicase (partial) # Organism: H.arsenicoxydans # Pathway: not_defined # 89 338 59 294 302 122 32.0 2e-26 MNPKNTSVSPELDGYWGDPTGGAEIETSLSDYESRAYKSPEFFINKDVLEFKNDFQNYLE AKKTHVSKFTLPFTQTNEGCIGRPIDFEFRPGELTVLAGENGSGKSLLLGQIGLHLISCG ASLYIASFEMAPVRTIERMLMQTVCSTDKRMIEEPDVDLFFKQFASKMRICDLQRKVSPD ELLRLLDSAVRDYRSDILFVDSLMMCVRDDMDKKETDYVMTKLVEFARINNVHIVVVAHC RKRGDASSKTYSVFDSASKDSIKGSSNITNIAFNVFVLARDFSKVQKKAEGKDVDDTKPD FVLNLCKQRNGAWEGFIKLWRDNASLNFCTSWTRVPVRPWLELTQSDPAPEPYF >gi|301349806|gb|ADCQ01000044.1| GENE 31 16925 - 17146 213 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859601|gb|EFL82680.1| ## NR: gi|302859601|gb|EFL82680.1| hypothetical protein HMPREF0189_01175 [Burkholderiales bacterium 1_1_47] # 1 73 1 73 73 131 100.0 1e-29 MQIDRIKGVEVVRWTDEEYRNLYGESWLDQYRWASELGADPDKVRTATLKAWGLLKRNSD LIGEEPFRRKHEL >gi|301349806|gb|ADCQ01000044.1| GENE 32 17136 - 17309 194 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859602|gb|EFL82681.1| ## NR: gi|302859602|gb|EFL82681.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 57 9 65 65 95 100.0 8e-19 MSFDFKSFVLTLGTTGGVLYLADIFWFAWDGSNIDYNVGWVVGIVIGAIIGSIRRTR >gi|301349806|gb|ADCQ01000044.1| GENE 33 17306 - 17488 226 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859603|gb|EFL82682.1| ## NR: gi|302859603|gb|EFL82682.1| hypothetical protein HMPREF0189_01177 [Burkholderiales bacterium 1_1_47] # 1 60 1 60 60 114 100.0 1e-24 MSGCCLYCIHAQAYWIGSDGKKHLPPKQSFGDMNIYCHHPDKGAGIECYPISFARCSVFE >gi|301349806|gb|ADCQ01000044.1| GENE 34 17645 - 18001 225 118 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_2692 NR:ns ## KEGG: ECIAI39_2692 # Name: not_defined # Def: conserved hypothetical protein from phage origin # Organism: E.coli_IAI39 # Pathway: not_defined # 1 118 1 114 114 107 51.0 9e-23 MKRFLQAKGRLKVGEMNRTEAAYRDYLEQQKNAGLILKYWFERFTWKIASNRCSYTPDFL VMRPDKTLELHEVKGSLKIFADDAKVKCKVCADECPIPLFIVTPKTKKEGGGWNVEAY >gi|301349806|gb|ADCQ01000044.1| GENE 35 17985 - 18194 214 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859605|gb|EFL82684.1| ## NR: gi|302859605|gb|EFL82684.1| hypothetical protein HMPREF0189_01179 [Burkholderiales bacterium 1_1_47] # 15 69 1 55 55 93 100.0 5e-18 MSRPISTEGIVFWTMTVYVATFAILWGLKWIDDFLLPRDKLRKKVKTLMLSTFGIVYLYC MFSYVRTLG >gi|301349806|gb|ADCQ01000044.1| GENE 36 18191 - 18676 298 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859606|gb|EFL82685.1| ## NR: gi|302859606|gb|EFL82685.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 161 1 161 161 297 100.0 2e-79 MTETEQKLIDDLRPRLDNWRRAYRDRVVKNVSIAYAVEKALALTRNKTDFSEDYSGPDDR SEDFATKVDQKDADLLNLVWQYLDVPGADFFTIGEGGLTVKTAKNIILLYVFSNNYALRR AGRKIWKVKDVKLEGWIKESLIFFALRLRAYESVKVKAEKQ >gi|301349806|gb|ADCQ01000044.1| GENE 37 18784 - 19488 248 234 aa, chain + ## HITS:1 COG:no KEGG:PAU_01443 NR:ns ## KEGG: PAU_01443 # Name: not_defined # Def: hypothetical protein # Organism: P.asymbiotica # Pathway: not_defined # 8 210 5 198 213 82 30.0 1e-14 MYQKSLSVLVGLTALLLAGCKSEITMPVTYSEVFGAPVIKNARLDIEVPACKEYKSELES SSVLEAKQKINYVFPNATYLGCKRDGGIDTFAQFQLPFKVGGVGLKDCGANEICVGSSQN NQFMNVFIGKDIKTKIDELSRSATIYGPKDVKVRLVFKNDTDQALGVDYISLFLSDGKDT IPVHNVKNAKFNSGFAAYMTLSDVASASLLRRGVVSVTRFPDRELKEVQAPAKN >gi|301349806|gb|ADCQ01000044.1| GENE 38 19646 - 19849 83 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAPILGLFVFRPFAQTSIVLPYSKIELLRKGGRSTFSAVSLTSMIIDNRQPLGGLKHRA IYNIQQA >gi|301349806|gb|ADCQ01000044.1| GENE 39 19991 - 20569 390 192 aa, chain + ## HITS:1 COG:RSp0570_1 KEGG:ns NR:ns ## COG: RSp0570_1 COG1475 # Protein_GI_number: 17548791 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Ralstonia solanacearum # 2 142 17 158 160 148 55.0 7e-36 MKESELKILYRSVNDLIPYANNARTHSEDQVNQIASSIKEFGFNNPILVDEQGGVIAGHG RLLAAKKLGLKVIPTIELAGLSEAQKKAFILADNRIALNSGWDIDLLRIELQELQDTDLA PVTGFSDEELNALLCGTTEATEEEEEPEKEEPEADSFNLTLSIPIEYKEQVQDFVKSFGP EDLIQKIIDMTS >gi|301349806|gb|ADCQ01000044.1| GENE 40 20589 - 21038 237 149 aa, chain + ## HITS:1 COG:no KEGG:NTHI1526 NR:ns ## KEGG: NTHI1526 # Name: not_defined # Def: hypothetical protein # Organism: H.influenzae_NT # Pathway: not_defined # 5 107 1 103 122 89 53.0 5e-17 MEEKVQKHRTRPRIQIDLEKVEQLAQVCDNEEEIALALGISYRTLQNRKKDFANFATAIK KGKAKANAFVGGKLMALIREGNPAATIFYMKSRCGWKETDRKEITGKDGEPVKVDKVNQL DLSKLTLEQLDALEGIVNAASNDTGDQTS >gi|301349806|gb|ADCQ01000044.1| GENE 41 21682 - 22449 209 255 aa, chain + ## HITS:1 COG:lin1732_2 KEGG:ns NR:ns ## COG: lin1732_2 COG5362 # Protein_GI_number: 16800800 # Func_class: R General function prediction only # Function: Phage-related terminase # Organism: Listeria innocua # 80 245 6 171 176 153 43.0 3e-37 MGEGDTFRIVNYPAIAEHDELHRKAGEALHPERYPLSTLLQIQKTIGSRDWEALYQQHPV PDGGALFKLEWFRRWTASSLPPEFDHTLMSWDMTFKDSKKSDYVVGQVWGKKGPNFYLLD QVRGQWDFVKTKEMVRVLAQKWPRVVRKLVEDKANGSAVISELKSTVSGFVPITPTESKE ARASSVTPYFEAGNVFIPEDCAAPWVPHYVSELLEFPAGSHDDQVDSTTQALNYFRNGSG VILTREQMQQARFRF >gi|301349806|gb|ADCQ01000044.1| GENE 42 22455 - 24032 995 525 aa, chain + ## HITS:1 COG:XF1571 KEGG:ns NR:ns ## COG: XF1571 COG3567 # Protein_GI_number: 15838172 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 102 443 68 405 467 102 26.0 1e-21 MNQLDENKRRTINQKILDAAGSRFVPPRTSLSQDEAKTLFYPPITLNTKEPEKEESRFTN DAAIGSSFNAYYASLTQHALDLGQFPMTSFVGYGVLQNIAQNGMIRTCIQTVADDMCREW IQVEGGEDESADNVKTLQDLQENKYRLRRLFNEALSIVGFMGGAFIFVDTGVEGEALKLP LNYSDKSAELVGEDKSVKFIVIDPVNVSPGFYNANQPLKDDYLKPKSWFVYGQKVHASRM IRLVDNEPPLLLRPAYNFLGIPQAQILWDYVLHWNKARETGVSILEKLNLTVFKTNFAEA LQTGGIEQLDAKMMLLQRYRSNEAIFACDSTEDLQNITLTISGVEGIIRQALEFIAAINR TPAVKLLGISPSGFNATGQSDIRNYYDHIKSKQELNRDAIQTVLKAIQLVEFGHVDPSIS FKFNELGEADAAATAITAKTKVDMLAVLQDRNVLSAEEVREFVRRDSDMGLDFIPEELPE GMEGELMTDDPSQQNELMNNFMKQRSAENVAPAPKVDEDKAGEIF >gi|301349806|gb|ADCQ01000044.1| GENE 43 24032 - 24928 417 298 aa, chain + ## HITS:1 COG:no KEGG:KPK_4141 NR:ns ## KEGG: KPK_4141 # Name: not_defined # Def: putative phage head morphogenesis protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 98 297 44 229 235 90 29.0 6e-17 MKTARAVQPNLGRQAKFKKKLDTFLKSFRNRILNEILLYLSDAGGLTEDASLTFRPDDPL DRARLRNIKEKINRLVLRDPDRFRRNVDDFIARNMGNWMRAADRETRQIAEWYVKNLAAD VSTAQKAALRAAGIPDSVFAYEMRQTRKHFFITPQAINELPGMVADTTSLISNITTSELT NIRSAFMDAYEGHGTYSQIVEALGRSSSFTAQRAQRVAIDQTLKLNQQIQQANCKGLGIT RGVWIHVPGKYTSRESHIEMNGKEFDLSKGLYDKEVGRNVMPGELYWCRCQFRSILPD >gi|301349806|gb|ADCQ01000044.1| GENE 44 24949 - 26400 1196 483 aa, chain + ## HITS:1 COG:XF1575 KEGG:ns NR:ns ## COG: XF1575 COG3566 # Protein_GI_number: 15838176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 49 187 38 178 397 98 43.0 3e-20 MGNLKRTVAIDSVSVRSVDDNGFLHVQKSPLTRVQVAPYYGKEIAGWRELGLDPEQIYHA YRPPEELSSPETIQSINGIPIHLEHHDDHGAPENKQTRVGTTGTDGAFEAPFLVNSLHIY DQDARSRIEDGSMRELSLAYTFEPDFTPGETPDGEKYDYVQRRIRANHLALVETGRAGPE VRVRDSNKDFLNMEKDDAVEQAEVTLAKAIIDLHSVDPNGKIVDGAQDDDKDAMIQKIIE GLKAKGLTDEEAEKLKTTLSDLAYSQATGDEDPKPDDQKEAQDDDPELDEKMKDPNFKAG FEAGVLYGEKREKDDPKRLDSDHEREGEERYLEKEAEDALKSCGLDEASEEEKKAFAAGL NYAQKKDEGAQDEDPKPDDGKEEKSSASDSMKILRNAIYSELAAIEEVKPVLGVIRAGSY DSAGSIYVAALKKLGLKNIPASEARSAYRAYMQGRKALAGAKDSGAKVTEKPTAVSAILN NVK >gi|301349806|gb|ADCQ01000044.1| GENE 45 26416 - 26928 705 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859614|gb|EFL82693.1| ## NR: gi|302859614|gb|EFL82693.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 170 1 170 170 271 100.0 1e-71 MLQKSVGLYPAIGIPGQQVAFNQAVYTPQNYLSDGTVQCGGFAFAVAASTTGTAVKFPIA SLKGSAGAKPIGFVERTFTASIELGTDTPDIYPKGAELTIAVRGDYYIVAPAAATIGQAV LCDPTTGAITFGAAGAANDTGWTVQTAGAKGDTIIISNHGLGYQPAASGS >gi|301349806|gb|ADCQ01000044.1| GENE 46 26942 - 28015 1130 357 aa, chain + ## HITS:1 COG:no KEGG:KPK_4138 NR:ns ## KEGG: KPK_4138 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 357 1 345 345 204 34.0 3e-51 MNDFELAKQKGVHGVEAKGFMSYSTDAKGKINVDYDATVKAMARDAALQTPVSVGVPSVF TTFIDPQVVPILFAAQNATKIFGEERKGDWTDNFFTFPVEEYAGNVTPYSDFAENVSTDV NVDYPTRENFLFQTVIKYGDREVGLAAKAKLNVVSSKQQASAYVMAMAHNKFALYGVEGK KVYGLLNDPNLNASISPISITTGSTTNSTWTAKCAAQPEKTANIVYNDINKLWAEISKNN GGLVDQNSRIILAVSNTRAPYLTEPNSFGLTAMTMLKQSFPNIEVVQLPELTTTAGEMLY MTVPDLFGIETGICAFSEKYFLGRVVPEMSSYKQKVVGGTWGAVIRRPSLVATMLGI >gi|301349806|gb|ADCQ01000044.1| GENE 47 28077 - 28550 487 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859616|gb|EFL82695.1| ## NR: gi|302859616|gb|EFL82695.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 157 1 157 157 291 100.0 9e-78 MARTNTTQKATSGKVVADNFSNTQKKSTAKTQSTVIIACTLAHGLKFDDVPNGNGGTKTI VFPGVNDSLRGKRDGILLGKGNSVAFQIDKEDWENIKRMHGQEAVFTGVNGGIPCLLEMK SVQEFRGREDELKEASHGLNPIDPESVNVEEVKNEEG >gi|301349806|gb|ADCQ01000044.1| GENE 48 28555 - 28983 477 142 aa, chain + ## HITS:1 COG:no KEGG:KPK_4136 NR:ns ## KEGG: KPK_4136 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 136 1 138 147 68 36.0 7e-11 MAVVVFDPEKFRILHPAFSDEVKFPDETLQFYFDVAVEFVGNTDADSFAPYDPDNKIYTR ERLLDLATCHLLTLSQQPNGQVGRIASATQGSVSTSFDLLKTNTFVGDWWAQTQCGAMYW TLTAKYRIGGRVYPGNNYHPWG >gi|301349806|gb|ADCQ01000044.1| GENE 49 29076 - 29555 295 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859618|gb|EFL82697.1| ## NR: gi|302859618|gb|EFL82697.1| hypothetical protein HMPREF0189_01192 [Burkholderiales bacterium 1_1_47] # 1 159 35 193 193 283 100.0 2e-75 MIPDIATIGMYLEYGWTQSVTSKQGHYLSAQLGLPPNSKFTTLYMPPRPFMRATYAQKRM DWQEKFRSRFLKTFDITHSLGVMGQMATDDIKQTIREAGIPAGSFPKRSELTMALMQARG EMDKAKKAKGKGTLPNNVMTTKPLTLSGVLQSSITWKVS >gi|301349806|gb|ADCQ01000044.1| GENE 50 29555 - 30037 301 160 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859619|gb|EFL82698.1| ## NR: gi|302859619|gb|EFL82698.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 160 1 160 160 315 100.0 8e-85 MSLNLHAIVRQAINANYADETFKLYRSVGQKNVGGIVQAYYAPAEEIQGNFQSEGDSALD HANLAGQNTIIRRLYLFASSDQKQRPWAIYRPLARSGDYVEDSKGGQWLITAVIEDFSDA GWEAVRCTLQTTPQKLNIAEDEDESTKPDPEHPDSNPGVS >gi|301349806|gb|ADCQ01000044.1| GENE 51 29982 - 30554 297 190 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859620|gb|EFL82699.1| ## NR: gi|302859620|gb|EFL82699.1| hypothetical protein HMPREF0189_01194 [Burkholderiales bacterium 1_1_47] # 1 190 3 192 192 375 100.0 1e-103 MKAQNLTPNIRTAIQEFLEIFAVPAVAPENIFYGNQNNLALPPEGNDYVIYSYISSVRHG TSAEDWEKDQTDDNVYLSTTTEVLVQVDCYASTLNGSDGMNAMLRAQALETVCRSQVGVK FFVDRGISLLHADDPRDTTIIGDSDNYVRRSTLMIHLSMQSQIKVSMGFFSAVDVDLKNV DVSYPPKEKQ >gi|301349806|gb|ADCQ01000044.1| GENE 52 31507 - 31620 186 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTAVPLYAALPVYLIGYGFAVWVIAKAIKAVKDIFK >gi|301349806|gb|ADCQ01000044.1| GENE 53 31703 - 33199 1194 498 aa, chain + ## HITS:1 COG:no KEGG:ECL_03555 NR:ns ## KEGG: ECL_03555 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 492 1 486 492 196 30.0 2e-48 MSINASRLVSITPRVISAGSADLETNGLLLTQNALIPADSPALEFVTAAAVGNYFGAESP EADFANQYFSGVNNQQKAINRLFVARRINADSAAWIKSAPITAQLSELTAIKTGSLTISV NGTEKEVVNLDFSTAKSFSDVATELASAVGAVSGAFNSVQNAIILTTTETGDTASISFAT KATTGTDVSALLGLTEDSGAVLSQGSDALTPAQNMNLVTSVSRNWVGFTTLYATEVAEAS ALAAWADIDDDYVYFDWSTDTKMLDQSTQSTTKAAQLAENNYNCLAMVYGTAQDVAAFLA VGASIDWSAIQGIKTWFAKSASGIKASVLSDEVAEALDDLKVNYVGAFATRNAEFDFINR GCLLSGIYQWIDALYGMIWFKARIQRQIMDGFAAINRAPYNAIGFAYVEAWLLDPINDAK RNGVIDTGLALSNSQIQQLLTETNNSTIKQDLYSKGYWYLIESPSANVRTQRGSPRLGLW YTYAGSIQRIEMPLTAVM >gi|301349806|gb|ADCQ01000044.1| GENE 54 33264 - 33701 376 145 aa, chain + ## HITS:1 COG:no KEGG:SG0757 NR:ns ## KEGG: SG0757 # Name: not_defined # Def: hypothetical protein # Organism: S.glossinidius # Pathway: not_defined # 7 144 4 141 144 84 32.0 1e-15 MPVQNFDITSANASAVMTIEELYPNGLKLERFSTDAAIVADSQQVAETRMGVDGRMAAGV TPNIYPVTITLEANSPTAAAFTTLFEAMSSNKQLYVCNLTIKIPSIGKTYQFSNGVLQTA NPMPGLNKVLAATTWVFHFESMERI >gi|301349806|gb|ADCQ01000044.1| GENE 55 33702 - 34100 231 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859625|gb|EFL82704.1| ## NR: gi|302859625|gb|EFL82704.1| hypothetical protein HMPREF0189_01199 [Burkholderiales bacterium 1_1_47] # 1 132 1 132 132 256 100.0 3e-67 MREPVIFKTTDGDKQLTFKIYPFPATKSEDLLIRILLLTGKNLDLDASVSYKEIIRALAS VPHMEAKALLDELLTCVYKIDGNNERQFSYDDADGYISNPMTLIRLRVESLKVNFSFFQN FGKLFSHVEPSS >gi|301349806|gb|ADCQ01000044.1| GENE 56 34295 - 35992 969 565 aa, chain + ## HITS:1 COG:no KEGG:EpC_17700 NR:ns ## KEGG: EpC_17700 # Name: not_defined # Def: phage related-protein # Organism: E.pyrifoliae # Pathway: not_defined # 55 493 17 451 558 77 22.0 2e-12 MAKTTDSLLIDIGLNADGIIEFFDSLSKKIDFLIKKSADAGDNLDELLGNPIGDQTAAAV ESVKNNSDAATASMRQASQAGQKAGKDIEKGAKQGSQALQKLDSMASKVFSAIKGYAGPL AAMFGAKMMFTNFIDEGDKLDKLSKEVRMNVSELDAWRKANVAAGGSADAFTNALKSFTD RTGASASVFLRMGKQLNGMNDAQANYALKYLGLTRESAAVFLQNNKQMNELVGKYRQMAL SPKDAENARRFKIQWEITTMSMKNLGNQVAKVFLPYVDKGMKKFGEFTDFVAQHSEFIKI ALELVAGAAALALGPKSTLMLGGKALGLLASPVGLVVAGIVALALALDDLISFAKGGPSA FEDLLRSMGTSDDEIKELRKSFQDAWKAIQDLMDALKPVGDLFLQAFGSVIKVAIETIVL TIGKVAEVIAKVINSVSGLRDKFVGAFESIKSSIQPIVDWISSALSDITNFEMPSWVNPM NWFGSDDKKKAVVAPAGATVGNAGGVVKEKGRTTNINSPISNQTVVNFNGNPDKEQVIQG VNQGVSQAMQGSTDMLNNAASGVDF >gi|301349806|gb|ADCQ01000044.1| GENE 57 36013 - 36525 91 170 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859627|gb|EFL82706.1| ## NR: gi|302859627|gb|EFL82706.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 170 8 177 177 332 100.0 4e-90 MGLSWAVVGNNLLPFIPYVSIAAVDADQSSRIPTEPIEKGQLAAYNIVREPERVNVEFLF NGSYAVQVLALAMLDRRMNSTDTCTIFSPAKIWRNMALEHYDFSRTQTSNACMLSIHASF VEIITVNLNQQKIAYSPKRATSAVKVNTGQAQTKPTMAQSLIKWAGGLGK >gi|301349806|gb|ADCQ01000044.1| GENE 58 36663 - 36878 229 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859628|gb|EFL82707.1| ## NR: gi|302859628|gb|EFL82707.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 71 34 104 104 152 100.0 7e-36 MYCNLTCEEVEIFKGRKVCVGTDINTYPSPNFKGKLRMIDTLGNSDPQYEGLNDRWILVY ASENEVLNGAQ >gi|301349806|gb|ADCQ01000044.1| GENE 59 36865 - 37725 191 286 aa, chain + ## HITS:1 COG:no KEGG:KPK_4125 NR:ns ## KEGG: KPK_4125 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 7 284 2 278 284 103 26.0 7e-21 MVLNETTYTQKDIAVTVAMDGQEAITFKDFAMSVSIDKSGCPAYPKASVVLKGLSLNTME RLTHLGFKSFSLKRNKINISAGQKGKTLSVIFKGEIINAWADFNTAPSPVFKVEANCGLF PALIPQPPISVTGNQTVSGLIEQISKEVGYVLENNEVTASIRDCIINGDPVTKMRRIADA VGANLLFDDEKVVLMPKKGSRKTQGELPLINSSNGMIGYPTFSNNGINVSCFFRPELRIG ANFKLESIVPHASGTWKIVALKHELSANDPAGGSWKTSISGIYPRW >gi|301349806|gb|ADCQ01000044.1| GENE 60 37726 - 38436 424 236 aa, chain + ## HITS:1 COG:no KEGG:bglu_1g21230 NR:ns ## KEGG: bglu_1g21230 # Name: not_defined # Def: phage P2 baseplate assembly protein gpV # Organism: B.glumae # Pathway: not_defined # 14 235 16 250 251 129 36.0 1e-28 MSDKELSANYDNFASSNPLNSMEFFIRSLISQVVSTSLPVVVTAVERKGEEAGAGYVTVK PLLQPRNNSGDGLEVTTIPKLPYFRLQHGKAAIICDPKVGDIGLAVVAKQDISNINGSTT PKVPATYRKFDPSDSFYIGGFWGKAPEVFIHLEDEGTIKIKAPTKISMEAPECEVNASTS FTVNSSQINLNGPISGGGSGGADATFTGDVNAKGISLTSHTHTGVQSGNSSTGAPQ >gi|301349806|gb|ADCQ01000044.1| GENE 61 38453 - 38824 270 123 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859631|gb|EFL82710.1| ## NR: gi|302859631|gb|EFL82710.1| hypothetical protein HMPREF0189_01205 [Burkholderiales bacterium 1_1_47] # 1 123 1 123 123 221 100.0 2e-56 MPHTAKTALLSPQSWDLQLTKEGNILLTSGALAIAQNLANEIRLWTNDAYFQQANGIAWK EAQLAKKLDSSVLAQLIHEAGNRVDGVKSVDSVDITEFNEETRTLHGEITITTEQDETVS FVF >gi|301349806|gb|ADCQ01000044.1| GENE 62 38831 - 40045 830 404 aa, chain + ## HITS:1 COG:XF1704 KEGG:ns NR:ns ## COG: XF1704 COG3299 # Protein_GI_number: 15838305 # Func_class: S Function unknown # Function: Uncharacterized homolog of phage Mu protein gp47 # Organism: Xylella fastidiosa 9a5c # 41 387 39 371 387 95 28.0 2e-19 MAQIIFNPLVGVELPSTQEIRSDLGSRIQQAFQTSPTDPLLNIEPSSPMGQVLDLIVAEI EAKNSEILFLSNMVNPDLATGKFLDALAALYGLDRKISEPTVVNCVLTGLKGTVIPYGAI AQDSLGNQYRHSAAAGARIGDTGSVTTTFTAIEHGPLEVAAGAVNRIVTTIAGWDTINNP SAGVIGRDEETDAELRNRMVESYAVNATGYVEAIEANLAALEGVLDVRVLENPTNAAITQ FGVSINPHSILVAIVGGEDEQIAQTIYQRKDAGCGTTGTYQVSYTDSRFYNATYVYNIVR PQNQALKVKIEFFATSMNPTEKNNVIQTVINDVLGQGANDRVSLASTVYASRFYAAIQSA TAVPVASIQVALGSGAFGSSVQIPANVEPTIQESDVSLVFQTGG >gi|301349806|gb|ADCQ01000044.1| GENE 63 40048 - 40677 288 209 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859633|gb|EFL82712.1| ## NR: gi|302859633|gb|EFL82712.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 209 1 209 209 402 100.0 1e-111 MADSATWRNILSVEDFRKLSNVRSLISIALQSQYSHSERYRQLGLLFNAEIDASPQLDAF FNFILNPDTASGVWLDWWGKRVGVNRNLVVDGQDTRLDDEFFRFLIFYRAVVNVSNSTAE TINSLLTRLIGLPAFVNDYQDMTINIRIVGEPNSVQIAILKNYGLLNRPAGVLANVEAVV PNTLVFGFYGSKLLPFNQGVFNPSKVIDI >gi|301349806|gb|ADCQ01000044.1| GENE 64 40674 - 41720 449 348 aa, chain + ## HITS:1 COG:no KEGG:Haur_1990 NR:ns ## KEGG: Haur_1990 # Name: not_defined # Def: tail collar domain-containing protein # Organism: H.aurantiacus # Pathway: not_defined # 144 346 685 865 865 79 30.0 3e-13 MSNYPKFQIPGVVAANGEYTIPPLTPTEAGTGRLSVQEGWGQVNAVPIEQGGIPPHKDDF NGILLLISQFAVWFQQGGIMNYSARLDYEVGNEVMQNGTKYRCLQPNGPHSTAVAPGTNR AVWKNIDITVPAGAVVPFYNVALGGTGNRNPIFWGTTQADAGWILCDGGSDGSGGTTPNL VGKFVKGSLPKDAGATGGSATIEIQDLAVNGTIGGTALTVAQLPAHTHTGSANSAGNHAH TRGTMNITGSFWGENECYGASGAFTRSGAGNANKTEGNNGNQNDLSFDASKTWSGQTSTN GAHTHSLSIGNTGSGQTHTHTLNANVAITGVSNEPPFYTLAYFLRLPE >gi|301349806|gb|ADCQ01000044.1| GENE 65 41727 - 42728 387 333 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859635|gb|EFL82714.1| ## NR: gi|302859635|gb|EFL82714.1| putative cell surface SD repeat protein [Burkholderiales bacterium 1_1_47] # 1 333 1 333 333 316 100.0 1e-84 MANKKFQFHYTPTGTGVISGPEVLQQTEDAINNIGQYADQASDNSEEALSIAKEARQTAQ TANSTSSNALAEANAANEKVATLKQTVDDWDADIQTAIAQSKSAVDASTIAVNTANSAQT SASAAQTAAQGSATSAQTAANNAAQAVQTAQAAQQAAETAQGNAETAQTAATTAQTAAQT AETKALEAAASAYAVRVINQALTVSGTIQIADLKPQGNIKAGDTVVGTDGRMFTIASVDS SAGTALLSADYTDLTPSVSYQASQSLTTTQQQTARDNIAFGAGVNAWADSSFDGRVDDYV CPILEELILENGGTQQEIDDAKNAAESETPSTN >gi|301349806|gb|ADCQ01000044.1| GENE 66 42749 - 43363 354 204 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859636|gb|EFL82715.1| ## NR: gi|302859636|gb|EFL82715.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 204 1 204 204 372 100.0 1e-102 MKTLEQVRQEMLAKAMSQPLAKYSLKDSDGKVVVSSNSPGQHAFMDPKDEAFAKSHYKLS EKFKRDDGTIINFWKMEPSPKGYFQSADGNFYLSAELPELDDNFIKKRYELEVRGERNAR ISDTDKYVQLPDITVQSAARAKRAQLTEADRQALLNYRQALKDLPDQPGFPFIDYPDFPD ALAYELEQAVDARNSMRQGGFFNA >gi|301349806|gb|ADCQ01000044.1| GENE 67 43490 - 43780 118 96 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKIPDGTDPTYTAQGSYTVPYDALVTATSTDSRQGVSSAGVALSMASNGQPPSIICCVRR ELYNNTIYVFAKKGDVVTYSLTSTGNYLRIYKLLPV >gi|301349806|gb|ADCQ01000044.1| GENE 68 43816 - 44223 129 135 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKQLLQLLLNTRTTPEEAAHSAMPSDKYTRLVDNGTIGSEWTAQAFSGIAAYDGYLFFA GTSTSAVPIVGIATAGCASNLTFPWEGARLATTIPIAKGQTWTVQGSSLKDVIIDLSKTV SLGGIIALFGGLCHA >gi|301349806|gb|ADCQ01000044.1| GENE 69 44216 - 44563 252 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859637|gb|EFL82716.1| ## NR: gi|302859637|gb|EFL82716.1| hypothetical protein HMPREF0189_01211 [Burkholderiales bacterium 1_1_47] # 1 115 1 115 115 213 100.0 3e-54 MLKALIQLFAEKFLVSRSDWISYQSNPTVQATHITPSATGEWVSIVSPCNGWFCVKGVAS QVLLSNGEVWQGCHTTEASYKGFCLPVSKGWSVAYILSTNATSAYAFFVPSIGNK Prediction of potential genes in microbial genomes Time: Fri May 13 06:34:53 2011 Seq name: gi|301349805|gb|ADCQ01000045.1| Burkholderiales bacterium 1_1_47 cont1.45, whole genome shotgun sequence Length of sequence - 72548 bp Number of predicted genes - 61, with homology - 59 Number of transcription units - 32, operones - 15 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 222 - 434 119 ## gi|302859638|gb|EFL82717.1| conserved hypothetical protein + Term 660 - 697 0.7 + Prom 1484 - 1543 3.0 2 2 Tu 1 . + CDS 1678 - 2010 247 ## gi|302859639|gb|EFL82718.1| hypothetical protein HMPREF0189_01213 + Term 2118 - 2155 5.1 3 3 Op 1 . + CDS 2267 - 2389 122 ## 4 3 Op 2 . + CDS 2374 - 2523 127 ## gi|302859641|gb|EFL82720.1| hypothetical protein HMPREF0189_01215 + Prom 2722 - 2781 3.4 5 4 Tu 1 . + CDS 2843 - 3397 364 ## gi|302859642|gb|EFL82721.1| conserved hypothetical protein + Prom 3429 - 3488 2.5 6 5 Op 1 7/0.000 + CDS 3511 - 5922 1127 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 7 5 Op 2 1/0.200 + CDS 5919 - 6662 334 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 6700 - 6742 5.0 + Prom 7026 - 7085 5.2 8 6 Op 1 10/0.000 + CDS 7146 - 7562 510 ## PROTEIN SUPPORTED gi|149926826|ref|ZP_01915085.1| 30S ribosomal protein S6 9 6 Op 2 10/0.000 + CDS 7577 - 7867 156 ## COG2965 Primosomal replication protein N 10 6 Op 3 27/0.000 + CDS 7871 - 8143 360 ## PROTEIN SUPPORTED gi|149926828|ref|ZP_01915087.1| 30S ribosomal protein S18 11 6 Op 4 16/0.000 + CDS 8159 - 8608 480 ## PROTEIN SUPPORTED gi|237745855|ref|ZP_04576335.1| large subunit ribosomal protein L9 + Term 8647 - 8689 10.3 + Prom 8661 - 8720 5.2 12 7 Op 1 . + CDS 8755 - 10197 1483 ## COG0305 Replicative DNA helicase 13 7 Op 2 . + CDS 10201 - 10683 695 ## COG2839 Uncharacterized protein conserved in bacteria 14 8 Tu 1 . + CDS 10759 - 12432 2050 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH + Term 12453 - 12481 -1.0 + Prom 12494 - 12553 3.0 15 9 Op 1 6/0.000 + CDS 12583 - 13926 1539 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 16 9 Op 2 11/0.000 + CDS 13946 - 15256 1553 ## COG0460 Homoserine dehydrogenase 17 9 Op 3 . + CDS 15256 - 16689 1420 ## COG0498 Threonine synthase 18 9 Op 4 4/0.100 + CDS 16736 - 17263 355 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 19 9 Op 5 1/0.200 + CDS 17257 - 18450 1293 ## COG0303 Molybdopterin biosynthesis enzyme 20 9 Op 6 . + CDS 18460 - 18909 640 ## COG0314 Molybdopterin converting factor, large subunit 21 10 Tu 1 . + CDS 19024 - 21621 1847 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 21642 - 21692 7.5 + Prom 21656 - 21715 3.2 22 11 Tu 1 . + CDS 21735 - 22961 969 ## COG0477 Permeases of the major facilitator superfamily + Term 22990 - 23027 -0.3 23 12 Tu 1 . - CDS 22958 - 24058 843 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 24109 - 24168 3.2 + Prom 24109 - 24168 3.7 24 13 Tu 1 . + CDS 24202 - 25149 514 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 25358 - 25419 1.0 - Term 26229 - 26256 -0.8 25 14 Tu 1 . - CDS 26268 - 26663 218 ## COG1468 RecB family exonuclease - Prom 26773 - 26832 4.8 26 15 Op 1 . - CDS 26854 - 27141 121 ## gi|302859663|gb|EFL82742.1| CRISPR-associated protein Cas2 27 15 Op 2 . - CDS 27145 - 28137 595 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 28 15 Op 3 . - CDS 28134 - 32420 2032 ## lpp0160 hypothetical protein - Prom 32449 - 32508 8.8 - Term 34015 - 34055 4.2 29 16 Tu 1 . - CDS 34275 - 34463 106 ## - Prom 34573 - 34632 2.2 - TRNA 34364 - 34448 78.7 # Leu TAA 0 0 + Prom 34548 - 34607 6.7 30 17 Tu 1 . + CDS 34699 - 34905 365 ## gi|302859666|gb|EFL82745.1| toxin-antitoxin system, antitoxin component, AbrB famil + Term 34943 - 35000 1.3 + Prom 35071 - 35130 3.0 31 18 Op 1 . + CDS 35167 - 36483 1020 ## COG2308 Uncharacterized conserved protein 32 18 Op 2 . + CDS 36465 - 37142 548 ## Shel_22860 hypothetical protein 33 18 Op 3 . + CDS 37155 - 37925 351 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 34 18 Op 4 . + CDS 37928 - 38872 654 ## COG3608 Predicted deacylase 35 18 Op 5 . + CDS 38869 - 39804 853 ## COG3608 Predicted deacylase 36 18 Op 6 . + CDS 39825 - 40457 672 ## COG1739 Uncharacterized conserved protein - Term 40396 - 40434 8.5 37 19 Op 1 . - CDS 40462 - 43908 2949 ## CT1147 exonuclease SbcC 38 19 Op 2 . - CDS 43931 - 44209 528 ## gi|302859674|gb|EFL82753.1| putative L-Lysine transport protein - Prom 44229 - 44288 4.4 - Term 44248 - 44280 3.0 39 20 Tu 1 . - CDS 44303 - 44743 644 ## Clim_2386 hypothetical protein - Prom 44930 - 44989 4.7 + Prom 44694 - 44753 3.9 40 21 Op 1 . + CDS 44961 - 45614 430 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Prom 45618 - 45677 2.2 41 21 Op 2 . + CDS 45712 - 47358 1065 ## COG4187 Arginine degradation protein (predicted deacylase) + Term 47494 - 47529 0.1 - Term 47352 - 47387 6.5 42 22 Tu 1 . - CDS 47406 - 49475 2103 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 43 23 Op 1 16/0.000 + CDS 50052 - 52625 2279 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 44 23 Op 2 8/0.000 + CDS 52629 - 53207 521 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 45 23 Op 3 . + CDS 53204 - 54091 1061 ## COG3301 Formate-dependent nitrite reductase, membrane component + Term 54162 - 54203 10.2 - Term 54460 - 54510 7.5 46 24 Op 1 . - CDS 54655 - 56163 1659 ## COG3333 Uncharacterized protein conserved in bacteria 47 24 Op 2 . - CDS 56175 - 56645 276 ## Rmet_3963 hypothetical protein - Term 56651 - 56684 6.5 48 24 Op 3 . - CDS 56710 - 57693 1306 ## COG3181 Uncharacterized protein conserved in bacteria - Prom 57739 - 57798 4.4 49 25 Tu 1 . - CDS 57976 - 58734 495 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 58806 - 58865 5.3 + Prom 58744 - 58803 3.8 50 26 Op 1 . + CDS 58861 - 60261 1715 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 60308 - 60353 2.4 + Prom 60356 - 60415 2.7 51 26 Op 2 . + CDS 60454 - 63081 3221 ## COG0013 Alanyl-tRNA synthetase + Term 63113 - 63156 10.8 - Term 63150 - 63183 3.6 52 27 Op 1 . - CDS 63201 - 64220 1189 ## COG1087 UDP-glucose 4-epimerase - Term 64230 - 64267 0.0 53 27 Op 2 1/0.200 - CDS 64293 - 64946 925 ## COG0563 Adenylate kinase and related kinases - Prom 64976 - 65035 3.5 54 28 Op 1 11/0.000 - CDS 65069 - 65827 778 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase 55 28 Op 2 4/0.100 - CDS 65824 - 66018 229 ## COG2835 Uncharacterized conserved protein 56 28 Op 3 . - CDS 66030 - 67076 1139 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase + Prom 67369 - 67428 7.4 57 29 Op 1 1/0.200 + CDS 67560 - 69293 744 ## COG1570 Exonuclease VII, large subunit 58 29 Op 2 . + CDS 69345 - 69929 363 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 70108 - 70156 -0.9 - Term 69971 - 70005 5.0 59 30 Tu 1 . - CDS 70045 - 70392 371 ## Sputcn32_3388 hypothetical protein - Prom 70442 - 70501 3.3 + Prom 70369 - 70428 4.5 60 31 Tu 1 . + CDS 70606 - 72153 2338 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 72193 - 72233 8.0 61 32 Tu 1 . - CDS 72225 - 72515 303 ## COG1430 Uncharacterized conserved protein Predicted protein(s) >gi|301349805|gb|ADCQ01000045.1| GENE 1 222 - 434 119 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859638|gb|EFL82717.1| ## NR: gi|302859638|gb|EFL82717.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 9 70 1 62 62 90 98.0 3e-17 MRSWKSLLVSLTILLSGCASETPRYSESYSPNLETVVDLDQHLKSVQKLLANVQSTQSLI EESLSDVPSN >gi|301349805|gb|ADCQ01000045.1| GENE 2 1678 - 2010 247 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859639|gb|EFL82718.1| ## NR: gi|302859639|gb|EFL82718.1| hypothetical protein HMPREF0189_01213 [Burkholderiales bacterium 1_1_47] # 1 110 13 122 122 218 100.0 7e-56 MARFTQNWYVSIVQGKNNANSTGAIFSNVPVMPWIHHRLHPVLVRIFLRLGLSKTLKEER VFSPGERVDHVDLATRGVTARAIGSTKGDSPAIALSTPGHLAAGNLNFFS >gi|301349805|gb|ADCQ01000045.1| GENE 3 2267 - 2389 122 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRMPVPLTRKYQVLVTNCSSVWLDKVLHNWVREKKWERD >gi|301349805|gb|ADCQ01000045.1| GENE 4 2374 - 2523 127 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859641|gb|EFL82720.1| ## NR: gi|302859641|gb|EFL82720.1| hypothetical protein HMPREF0189_01215 [Burkholderiales bacterium 1_1_47] # 1 49 1 49 49 93 100.0 4e-18 MGARLRIRTRESRAFGPYYRWLRGCMDEADTYNYPKTLSEQIFFESNPA >gi|301349805|gb|ADCQ01000045.1| GENE 5 2843 - 3397 364 184 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859642|gb|EFL82721.1| ## NR: gi|302859642|gb|EFL82721.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 184 1 184 184 320 100.0 2e-86 MLFRYCVPKAISSTEFYPIPYYESVYLENQCFTIEADSQYQADEKAYRFLANLQKKHDLA YEKLLDEQGIRFRKREEIIERRPIYLRDLRRPGDLDTFGSQKDPKVWNEYRLNDYYWETE LPENFQVSGYRYEQNPSGGQYRFFRQLTDHQFAYGLVFLLIVVLLILLLPQFRGLGMLDV LNLD >gi|301349805|gb|ADCQ01000045.1| GENE 6 3511 - 5922 1127 803 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 48 774 18 718 730 438 36 1e-122 MRLKITAKNKTTQKSALTSAKPQRAILAAGVEAAEKAIERELRTAGFPMEMDDLKEYVML SHKGISSEVFDRAFNKLKEAGRIFTNREDIVLLTSSAKLHTGVVQGHRDGFGFLICEEDV PDMYISPEEMTKVLPGDIVVAREAGTDYRGRVLADIVELADRKLKRIVGRFELRRGVGIV VPEDARICKTILIAPGRSLGATPSQIVVAELEDKGLLTNSPVGHVVEILGTIDEPGMETE IAVRKFDLPYKFSEETKKEIKRFSDSVTKSDLRDRVDLRDIPFVTIDGADAKDFDDAVYC LPVEEGKFRLLVAIADVSHYVKPGCSIDKDAQLRTTSVYFPRRVIPMLPEELSNGLCSLN PQVDRCTMVCDAIIGANGLVEAYQFYPAVIRSAARLIYDNVWAALCNPNGPEAKVMEHVL GNVQDLYDLYKNLIKSRELRGAMDFETVETYIVANEQGKIEQILPRERNDAHRLIEEMML VANTCAADFLQKNKAPCLYRVHEPPSQDRLEKARATLAPFGVTLPGGDSPTPGDYAKVLE SIADRPDKAMIQTILLRSMQQAVYSPHNVGHFGLAYDAYTHFTSPIRRYPDLLVHRAIRG ILRRRKYVPKILVEPNEADVPVQTREIICKAKPDDKKKVAHIDLWEKLGLLCSAHERRAD EASYDVMAWLKCNYMQKKLGQVFKGVISGVSPFAIFVTLEDLYVEGAIHISGLGDDYFVF DDKSNEIYGEDSGLRYRLGDELTVKVARCDLDARRIEFALVSKNRQSRPKTEAKRKTVKS SAAPRKPAARKTKKAPSVAKKRS >gi|301349805|gb|ADCQ01000045.1| GENE 7 5919 - 6662 334 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 20 244 20 246 255 133 33 3e-30 MKKEDTVLAGFHAVSSRMKRDSSSIRIVYYDPKRRDQRMRRMIEEIEKAGIRLMQADNNR LDGFSHEVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADA AGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEA QKTIYEFDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET VRQRTVG >gi|301349805|gb|ADCQ01000045.1| GENE 8 7146 - 7562 510 138 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149926826|ref|ZP_01915085.1| 30S ribosomal protein S6 [Limnobacter sp. MED105] # 1 130 1 130 134 201 72 1e-50 MRHYEICFIVHPDQSEQVPAMIERYKAAVESHGGKIHRLEDWGRRQLAYPIEKLVKAHYV LMNIECGPEVLEELENNFRYNDAVLRHLTVKMKKAETEPSPMMKAVEKEEARKAASAAAE AAAPAPQAAEEALAEAQA >gi|301349805|gb|ADCQ01000045.1| GENE 9 7577 - 7867 156 96 aa, chain + ## HITS:1 COG:RSc1308 KEGG:ns NR:ns ## COG: RSc1308 COG2965 # Protein_GI_number: 17546027 # Func_class: L Replication, recombination and repair # Function: Primosomal replication protein N # Organism: Ralstonia solanacearum # 1 91 10 100 108 57 34.0 5e-09 MNSFELDGILEKKDVIRYTLASVPILDLAIRHMSVVQEAGSDRKLSFSAEAAAVGPAAKA LNEVELGSRLKFRGFLTTSSARSRKLVLHITEFEKE >gi|301349805|gb|ADCQ01000045.1| GENE 10 7871 - 8143 360 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149926828|ref|ZP_01915087.1| 30S ribosomal protein S18 [Limnobacter sp. MED105] # 1 89 1 88 89 143 80 3e-33 MAFGAKGKGRPRNPNQQNALFKRKKFCRFTVDHVDQIDYKDIDTLRDFIQENGKIMPARL TGTKAHYQRQLDTAIKRARFLALLAYTDNQ >gi|301349805|gb|ADCQ01000045.1| GENE 11 8159 - 8608 480 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|237745855|ref|ZP_04576335.1| large subunit ribosomal protein L9 [Oxalobacter formigenes HOxBLS] # 1 148 1 148 150 189 62 4e-47 MQIILLESIPHVGQLGDVVKVKDGFARNYLIPTKKAKRATAAAIEEFKAHKAELERAQAE RLAKAEELKGKIDGLTITIASKAGVDGRLFGSVTNMDVAEALEKLGYDIHKSQVRTPLGA IKAVGEYPLQIDLHHDIVANVNVQVVAEA >gi|301349805|gb|ADCQ01000045.1| GENE 12 8755 - 10197 1483 480 aa, chain + ## HITS:1 COG:RSc1311 KEGG:ns NR:ns ## COG: RSc1311 COG0305 # Protein_GI_number: 17546030 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Ralstonia solanacearum # 8 467 16 459 473 424 50.0 1e-118 MPDIRSEDREVQQYRTPPYSKEAEDGVLGALLIDNNTFDLIGGKIDSEDFYDYGNRLIFE NIKRLLSQGKPADILTVHDILREGGLEKETGGLEYLNRLADYSPGAANVLRYAEIIRDRS IRRRLITTGNDIINDSMNPGAREAKDLLDEAQAKVLRISEDLSRSSSGFQKIDAVLADYT DHLRELSEIDNPSNVSGTSTGFPDLDRMTSGMHDGQLIIIAGRPAMGKTAFALNIALHVG SNQGLPVGVFSLEMSAEEVTGRLLSAKGEIPQSELKTGHLENWRGFYDAAESLEKAPIFI DDTAGISILNLRSRARQLMSRVGGKLGLIVVDYLQLMSGESGGRNDANRAQEIAEISRGL KGLARELKVPVIALSQLKREVDTRPNKRPLMSDLRESGSIEQDADVIIFLYREVAYQQKT DDMGEDGQPMPAVDSNAPSDAEAIIAKQRSGPTGTVNLIFQGMYTRFVSRATPAQMHAGY >gi|301349805|gb|ADCQ01000045.1| GENE 13 10201 - 10683 695 160 aa, chain + ## HITS:1 COG:NMB0932 KEGG:ns NR:ns ## COG: NMB0932 COG2839 # Protein_GI_number: 15676826 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis MC58 # 2 159 1 158 162 85 36.0 3e-17 MLDIILWVIAAALMVIGFAGTIVPMIPGLPLIFAGAWLAAFIDHYNEISVMTLVILAVLT VIGLIVDWIAQTLGAQKAGATKLGILGSFIGTIIGIFTGLWGLIFMPLLGAAIGEFIDHR DLLKSGKVGFATWLGMMIGIVIKLGLAFTMIGIVIAALVI >gi|301349805|gb|ADCQ01000045.1| GENE 14 10759 - 12432 2050 557 aa, chain + ## HITS:1 COG:RSc1316 KEGG:ns NR:ns ## COG: RSc1316 COG1875 # Protein_GI_number: 17546035 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Ralstonia solanacearum # 1 557 1 572 572 674 60.0 0 MPLPKAPVAKGSVLTDIPAELPTQAPAPTAARAPRKTKAAAKPAVAAKTLRTKTTVEPIS AKEAKQEVKAAAPVETKEVLKETTLAHRRNKNLKHDGKNKLYVLDTNVLLHDPTSIFRFQ EHDIYLPMMTLEELDNHKSGMTDVARNARQVSRTLDGILQNLEGPIDKGIPLETLNHGEA TGRLFIQTKPFDVKLPMLPQGKADNQILSVVEGLKESVKDRDVVLVSKDINMRLKAAALN LVAEDYYNDKMIEDSDILYSGTLKLPANFWDEHGRNLKSWQKDGRTWYQIEGSLVPSFLV NQFIWYEQEGATPFYAQVMSVEGNRATVRLIDDYLNPKHTVWGINARNREQAFALNLLMD PNIDFVTLLGQAGTGKTLLTLAAGLTQTMEQRRFNEIIITRATISVGEDIGFLPGTEEEK MAPWLGAIDDNLEVLNRGSGNGSDWGRRASEDLIRSRIRIKSMSFMRGRTFLNKFVIIDE AQNLTPKQMKTLITRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWPHSGHIT MQRGERSRLADFASDAL >gi|301349805|gb|ADCQ01000045.1| GENE 15 12583 - 13926 1539 447 aa, chain + ## HITS:1 COG:ECs3259 KEGG:ns NR:ns ## COG: ECs3259 COG0436 # Protein_GI_number: 15832513 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli O157:H7 # 5 403 10 408 412 631 74.0 0 MNNDFPRIKRLPPYVFNITNELKMAARHRGEDIIDLSMGNPDGDTPKHIVDKMVEVAQRP GTHGYSASRGIPRLRKAISDWYKRRWDVDIDPDKEAIVTIGSKEGIAHLMLATCDRGDTV LVPNPSYPIHIYGSIIAGADVRSVRMGPGIDFFSEFERAVTETTPKPKLMILGFPSNPTA QCVDLDFFEKLVALAKKHGVYIVHDLAYADIVYDGFKAPSIMQVPGAKDVAVEFFTMSKS YNMAGWRIGFMVGNRELVGALTRIKSYHDYGTFTPIQVGAIEALNGPQECVEEVRKEYEH RRDVMVKGLHDLGWMVEKPKASMYIWAELPEFYKSMGSVEFSKRLLEKAKVAVSPGIGFG EYGEGFVRIALIENADRIRQALRGIRQMFKEDGLIQPKTKKFHRRWKGEPAPAAPEKKPA APKFAKVKNIPTKGSKKPKAKAASKKK >gi|301349805|gb|ADCQ01000045.1| GENE 16 13946 - 15256 1553 436 aa, chain + ## HITS:1 COG:RSc1327 KEGG:ns NR:ns ## COG: RSc1327 COG0460 # Protein_GI_number: 17546046 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Ralstonia solanacearum # 22 435 21 438 439 415 57.0 1e-115 MATEIKVGLAGFGNVGKGTYDILERNHSLIRQRAGAPISVKRVTVRNVDRVKLLVDEDVI VTNDWHDLVNDPEVNVVVEAMGGIEPAKSLILAAIDAGKHVVTANKALLAEHGNEIFSAA QAKGVNVAFEAAVAGSIPIVKALREGLAANRVSSIAGIINGTCNFILSTMRDTGRSFDDV LKEAQRLGYAEADPTFDIEGTDSAHKLMLLSAIAFGVPVDMSKVHIEGITHLEAKDIKFA EELGYRIKLLGITKYTDYGIELRVHPALVPTRRLLANVEGAMNAVVVKGDAAESSLYYGK GAGSEPTGSAVVADLIDIARTAEVAVSERPRMPTTTHNPKAKSFADFGDTVCSYYLRIPV EDKPGVLAEIARILADNKISIESLIQKEAPLEDASTEIILLTHSTREADIQRAIRTMQQL ANVRGAIVLLRKEELQ >gi|301349805|gb|ADCQ01000045.1| GENE 17 15256 - 16689 1420 477 aa, chain + ## HITS:1 COG:RSc1328 KEGG:ns NR:ns ## COG: RSc1328 COG0498 # Protein_GI_number: 17546047 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Ralstonia solanacearum # 1 473 1 478 481 547 56.0 1e-155 MQYVSTRGGVPAASYSEIVLQGLARDGGLFVPKVYPQVSKETLKNWRSLSYAQLATAVTS LFAKDMQRSDIARLCETTYTPEVYCHGREGTDFKKIAPVVWLENDFGILELSNGPTLAFK DMAMQYLGSLFEFVLARKETRLNILGATSGDTGSAAEYAMKGREGIQVFMLSPAGRMSKF QKAQMYSLQDKNIFNIAVQGSFDDAQDIVKAVSGDLTFKTEHHIGAVNSINWARIAAQVI YYFSAWLQATESEDEEVTFSVPSGNFGDVLAGWIAKQMGLPVARLIVATNENDVLYEFFR SGRYRIRDSAHTFVTSSPSMDISKASNFERYIYDITGRNPERVVELWTELAQKKEFLLNA EEWAAVKASGFTASRSTHADRLACIKRVWDQYGFLVDPHTADGINAAVKERIPGVKTICL ETALPAKFAATIKEAVGFEPPVPAGYEDLLEKPQKVLEMPADAQLVKNFLAEHDVGK >gi|301349805|gb|ADCQ01000045.1| GENE 18 16736 - 17263 355 175 aa, chain + ## HITS:1 COG:PM1785 KEGG:ns NR:ns ## COG: PM1785 COG1763 # Protein_GI_number: 15603650 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Pasteurella multocida # 3 161 4 158 169 134 41.0 8e-32 MKIVNFVGYSGSGKTTLIEKIIALLAERGLKVSAVKNAHHNVDIDKPGKDSYRFREAGAT QVIVHTDERWAMLTETPKDKPTLSDLIRHLDPADIVIVEGFKTEEQEALRLEVWRKLERH ETPICAHDKRIAAVVTDTTHPAFGNLPIFDINDAEPITRFIVRELGLEDGETRKC >gi|301349805|gb|ADCQ01000045.1| GENE 19 17257 - 18450 1293 397 aa, chain + ## HITS:1 COG:RSc1330 KEGG:ns NR:ns ## COG: RSc1330 COG0303 # Protein_GI_number: 17546049 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Ralstonia solanacearum # 20 392 32 415 419 353 51.0 4e-97 MLTVEQAKAKILEGAEAVAEVEDMVTLYSAGKILAQDIVSEIKVPPLDNSQMDGYAVRCA DFAGGRRNFPVSQRIFAGHVGTELEPDTVARIFTGAPIPPGADAVIPQEEASEMEDGSVE FHCDPKAGAWIRRAGCDIDVGQTVLKKGDRLTPPALGVAASIGVSTVKVYRPIRVSLFFT GDELAMPGEKLVEGGIYNSNRFVLRGLLHQLGCDVVDYGNIPDTFEATLEAFRKASRKSD FILTSGGMSVGEADFIRRAVEELGKMQMWRIAMKPGKPVAKGEVRGVPFIGLPGNPVSGF VTFLLFAQPLILKLSGRGQIDVKGYILPLAFDYKCGSRREFIRVRRNGAGELENYRTQNS AVLSSCTWADGLADIPAEADLKKGDLVTYIPFTEFNL >gi|301349805|gb|ADCQ01000045.1| GENE 20 18460 - 18909 640 149 aa, chain + ## HITS:1 COG:RSc1332 KEGG:ns NR:ns ## COG: RSc1332 COG0314 # Protein_GI_number: 17546051 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Ralstonia solanacearum # 3 147 4 149 176 186 63.0 1e-47 MKIAVQTEDFDVQAEVAALHASPKVGAVVMFLGTVRDLNEGDEVASMTLEHYPGMTEKAL TAIVEEAKKRWDIMDATVIHRVGELFATDQIVFVGVSGAHRGEAFKACEFIIDYLKTEAP FWKKEKVGEGTRWVQAKETDEAAKSRWTK >gi|301349805|gb|ADCQ01000045.1| GENE 21 19024 - 21621 1847 865 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 862 5 813 815 716 45 0.0 MRQDQFTTRFQELLGEAQSMAVERSQQYIDPLHLLLAVLKDTEGTGRTLLERSGVRVREL ERKVKEAIGKLPEVSGAADNVQISRELMAILNSMEREAERLGDKFISTDLFLLALCDSKC DAAHLAQEEGLNKPSLENAILSVRGGEKVDNPEAENNREALKKYTVDLTEKAKEGKLDPV IGRDDEIRRAMQILQRRSKNNPVLIGEPGVGKTAVVEGLAQRIVNGEVPDTLRNKRVLSL DMAGLVAGAKYRGEFEERLKALLKEVVAEEGRIILFIDEIHTVVGAGKTEGAMDAGNMLK PALSRGELHVIGATTLDEYRKYIEKDPALERRFQKVIVNEPSVEDTIAILRGLQEKYEVH HGVEITDPAIVAAAELSARYITDRFLPDKAIDLIDEAAARIKMEIDSKPEELDKLDRRLI QLKIEREAVKKEKDEASKKRLSGLEEEIAKLSREYSDLEEIWKKEKNAALGSKEVRDEID KLKTKMEELRRSGKYEELAAIQYGKLPELEKQLVKEEKEETKLYDEKPKLLRTQVGAEEI AEVVSRATGIPVSKMMEGERQKLLDMAKYIGKRVVGQKEAVDKVVDAILRSRAGLSDPNR PYGSFLFLGPTGVGKTELTKALAEFLFDTEDAMIRIDMSEFMEKHSVARLIGAPPGYVGY EEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQALDDGRMTDGQGRTVDFKNTVIIM TSNLGSQEIMNRQGEDPEVVKEAVMDEVKKHFRPEFINRIDEIVVFNALDQKAIREIARI QIRKLAKRMEQQNIGLDVTEAALDEIGKVGFDPLFGARPLRRAVQDYLENQIAVDILKGK YAPGDTVFVDYVDGKFIFEDRKDNR >gi|301349805|gb|ADCQ01000045.1| GENE 22 21735 - 22961 969 408 aa, chain + ## HITS:1 COG:fsr KEGG:ns NR:ns ## COG: fsr COG0477 # Protein_GI_number: 16128463 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 17 321 30 327 406 65 22.0 2e-10 MYAQGTRGHDILAIFLVSIAHASSHFYHLVIPSLFPWILPHFGMNFLQGGTLMTTFFVTS AVGQSMSGFLVDKVGGRTSMYTGLVLLIASAVALGMAENVPMLYLSAMLAGAGNSVFHPS DYSLMNYNIRDRFLGHAFAWHNITGNIGWAICPFFMVTTAGLFGWRGAAFAASSVALIVL VIELVFRGVFSRDSVRDTTPPTPKEKEEGTFGFLRVPDVWYCFMFFFFTSGAFGVLQSFS QTIFKNAYHLNLTGASAALTAYLLGAGAGALIGGFLTNQHKISSNRVVALCLTFAAVMAA ILASQILTGYWAVVLMCLMGLGTGVAAPSRDIMIRGATVAKLGKKSFGRVYGFTYCGMDV GQSLTPILFGPLLDVGMFTAVLFGVAILQTFAIFTALRVSTQSSPSAP >gi|301349805|gb|ADCQ01000045.1| GENE 23 22958 - 24058 843 366 aa, chain - ## HITS:1 COG:SMa2355 KEGG:ns NR:ns ## COG: SMa2355 COG0389 # Protein_GI_number: 16263727 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Sinorhizobium meliloti # 7 343 27 363 379 322 49.0 6e-88 MNFDNYRRILHLDLDAFFASVEQRDNPSLQGKAIAVGLNSARGVVASASYEARKFGVRSA MPSSVAARLCPNLIFVPGRMDEYKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDVWRDY GYAMEIAKLIKEDVRREVGLIISAGVSYNKFLAKIASDWRKPDGLCVIHPNAALKFIDRL PVKAIWGVGPVTSQKMEALGIFTGKDLREKDLSFLVEQFGSSGLSYYNFARCIDDRPVRT ERIRKQVSAEITLSKDEGNLNKLEDTLSELTDYLMTRLRKNDFLGRSLTLKVRFHNFKTI TRTQTSNSVFNEKSQILKTAESLLEKIDFNHQTVRLLGIAIGNRLEEDTENMLNLGDMDE LTPRLL >gi|301349805|gb|ADCQ01000045.1| GENE 24 24202 - 25149 514 315 aa, chain + ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 6 283 14 292 306 140 30.0 2e-33 MNKTLKGMAMAGLAAVFWGSMGVAGQYLLQNCHFTPMDLISIRMLLAGSIFVGIEFFLLK KGALKVFETKQNIIDLIIYTLTIIGTQLTFFVCIQYANAPFAAVLTATVPLWIMIFMVVF QHKRLTVKEVFCGLVAVAGVVLVVTGGSFKNFNVSGIGFWAGIGSGITGAFYVLLPQKFI ARVGSGLATSWALLLTGVTVTLFSHFWNEPLDWTVYSILAYAFIVLFGTIAAFWLFQAAA EIIPADIAGMMETFDPVAATLLSMIFLGVSVNSWECIGGASILGAVAFLAVPSKHPFLIH YSRKARASFSQTDKD >gi|301349805|gb|ADCQ01000045.1| GENE 25 26268 - 26663 218 131 aa, chain - ## HITS:1 COG:AF1877 KEGG:ns NR:ns ## COG: AF1877 COG1468 # Protein_GI_number: 11499461 # Func_class: L Replication, recombination and repair # Function: RecB family exonuclease # Organism: Archaeoglobus fulgidus # 4 127 67 188 189 64 29.0 5e-11 MFKSNIYLKSSVYPIHGIADGIFIMEDGEIIPLEFKAQDNFVASRGHILQLTGYAILLEE KFQREVKQGFILYGKKGKSLRVEFTEERKKKVIEIAQKIISSFETGLLPDSPATSAQCGQ CEFLNFCGDRF >gi|301349805|gb|ADCQ01000045.1| GENE 26 26854 - 27141 121 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859663|gb|EFL82742.1| ## NR: gi|302859663|gb|EFL82742.1| CRISPR-associated protein Cas2 [Burkholderiales bacterium 1_1_47] # 1 95 1 95 95 189 100.0 5e-47 MYTHFLICYDIPNTPKRTKFAEMLKDLGLVALQKSVFYGALTATERHALDFSSRKLLGAE DKCLCIPCVLKPEEFKKSIGYEDFEYSEPDSYGFI >gi|301349805|gb|ADCQ01000045.1| GENE 27 27145 - 28137 595 330 aa, chain - ## HITS:1 COG:APE1240 KEGG:ns NR:ns ## COG: APE1240 COG1518 # Protein_GI_number: 14601280 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Aeropyrum pernix # 53 328 65 338 340 119 32.0 8e-27 MRHLTVSGFGDFLGVHGNRLIVRNGDNVILETALSRLRTIRIDKSVSLSSNLILACAARG IRIYFLDWKGVGVVEVSGMHRHAVVGVRKSQFECLKSLQAQLLAKEIIFSKIRNQRAVLL YFSKYLMKRETAYGLLLRNAGTRLEEISNLLNTRASGPDWKNTVMGLEGSASLIYWNALK EARLLPETFQEREGRGSTEITNAALNYGYAILHSYIQNALGNAGLEIYAGLLHADRAGKP SLVLDCIEEYRAWVVDRNVISLRCKLGSEQNFLDTALKKQLVELIDKTMSTKINYSQKQC KLENALQRQVYKLAGAIVEGKRYRGIRFKW >gi|301349805|gb|ADCQ01000045.1| GENE 28 28134 - 32420 2032 1428 aa, chain - ## HITS:1 COG:no KEGG:lpp0160 NR:ns ## KEGG: lpp0160 # Name: not_defined # Def: hypothetical protein # Organism: L.pneumophila_Paris # Pathway: not_defined # 9 1386 10 1335 1372 417 27.0 1e-114 MGKTHIIGVGLDLGGTYTGTFITSHPSDEAEHRDHSSAFTVVNSEKLSFSSKSRTAVRHR VRSYKGFDLRRRLLLLVAEYQLLQKKQTLAPEERENLRIALSGYLKRKGYARTEAETDTS VLESLDPSVFSSAPSFTNFFNDSEPLNIQWEAIANSPETTKALNKELSGQKEADFKKYIK TSFPEYSAKEILANYVEGRRAILDASKYIANLQSLGHKHRSKYLSDILQDMKRDSRITRL SEAFGSTDNLWRIIGNISNLQERAVRWYFNDAKFEQGQEQLDAVKLKNVLVRALKYLRSD DKEWSASQKQIIQSLEQSGDVLDVLAGLDPDRTIPPYEDQNNRRPPEDQTLYLNPKALSS EYGEKWKSWANKFAGAYPLLTEDLTEILKNTDRKSRIKIRSDVLPDSDYRLAYILQRAFD RSIALDECSIRRTAEDFENGVVIKNEKLEDVLSGHQLEEFLEFANRYYQETAKAKNGLWF PENALLERADLHPPMKNKILNVIVGQALGVSPAEGTDFIEEIWNSKVKGRSTVHSICNAI ENERKTYGPYFSEDYKFVKTALKEGKTEKELSKKFAAVIKVLKMVSEVVPFIGKELRLSD EAQSKFDNPYSLAQLYNLIETERNGFSKVSLAAHLENAWRMTMTDGSAQCCRLPADCVRP FDGFIRKAIDRNSWEVAKRIAEEVKKSVDFTNGTVKIPVAIEANSFNFTASLTDLKYIQL KEQKLKKKLEDIQRNEENQEKRWLSKEERIRADSHGICAYTGRPLDDVGEIDHIIPRSLT LKKSESIYNSEVNLIFVSAQGNQEKKNNIYLLSNLAKNYLAAVFGASDLSQITNEIESTV LQLKAAGRLGYFDLLSEKERACARHALFLNSDSEARRAVIDVLGSRRKASVNGTQAWFVR SIFSKVRQALAAWTQETGNELIFDAISVPAADSSEMRKRFAEYRPEFRKPKVQPVASHSI DAMCIYLAACSDPFKTKRMGSQLAIYEPINFDNLFTGSCQVIQNTPRNFSDKTNIANSPI FKETIYAERFLDIIVSRGEIFIGYPSNMPFEEKPNRISIGGKDPFSILSVLGAYLDKAPS SEKEKLTIYRVVKNKAFELFSKVAGSKFTAEEDKAAKILEALHFVTVKQDVAATVSDLIK SKKELSKDSIENLAKQKGCLKKVEYSSKEFKFKGSLIIPAAVEWGKVLWNVFKENTAEEL KDENALRKALEAAWPSSFGTRNLHSKAKRVFSLPVVATQSGAVRIRRKTAFGDFVYQSQD TNNLYSSFPVKNGKLDWSSPIIHPALQNRNLTAYGYRFVDHDRSISMSEFREVYNKDDLM RIELAQGTSSRRYLRVEMPGEKFLAWFGENSISLGSSFKFSVSEVFDNKIYTENAEFTKF LPKPREDNKHNGTIFFELVGPRVIFNYIVGGAASSLKEIFSEAGKERS >gi|301349805|gb|ADCQ01000045.1| GENE 29 34275 - 34463 106 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRLLGGPMVKLVDTRDLKSLGASCTGSSPVRATKSPSSPHHNFLPSQYLLGSLNRLVHHK NH >gi|301349805|gb|ADCQ01000045.1| GENE 30 34699 - 34905 365 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859666|gb|EFL82745.1| ## NR: gi|302859666|gb|EFL82745.1| toxin-antitoxin system, antitoxin component, AbrB famil [Burkholderiales bacterium 1_1_47] # 1 68 1 68 68 119 100.0 8e-26 MSANFSSDSIVWVDGQVTLPKHILKILGIENGHRSNVTFIVENGEVKIVNSAAYAMNNLK KAKDKEAA >gi|301349805|gb|ADCQ01000045.1| GENE 31 35167 - 36483 1020 438 aa, chain + ## HITS:1 COG:PA1730 KEGG:ns NR:ns ## COG: PA1730 COG2308 # Protein_GI_number: 15596927 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 14 436 45 468 470 377 45.0 1e-104 MDSLISNTAAINGLLARFGVKFGIYKNGEFHEQLFPYDSLPRIIPADEFAEIEAGLIQRV DALNAFLRDIYTEKRIVADGVIPEDFAFSSSGFLPACDNFVPPNGIYSHISGIDLVQAKD GTWYVLEDNLRIPSGASYPLIARKLARRASPETFKNNSVDRNDDYGLLLREAMESVNPGG RCVIMTPGRYNAAFFEHAYLAEMTGCPLVMHNDLFVQDNKLYFKSRSGSPQSVGALYRRI SDDYLDPLTFKPESLIGVPGIMNAYRAGNLAIINAPGNGVADDKGIYYFVPKMIRYYLGE EPILKNAPTYLPFYEEDREYCLANIERLVIKDVAEAGGYGVLFGKDLNQEELEAWKVRIQ TESRRFILQEVIDFIDLPVLEDGTVVERKCDLRAFVISSTNGTKVWHSGLTRFSRKPDSF VVNSSQGGGFKDTWILSR >gi|301349805|gb|ADCQ01000045.1| GENE 32 36465 - 37142 548 225 aa, chain + ## HITS:1 COG:no KEGG:Shel_22860 NR:ns ## KEGG: Shel_22860 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 1 223 1 222 225 140 37.0 4e-32 MDFISIEKGENLFWLGRYVERVYRTLNYLEGLYDVLIDTDETAYKEFCAALNIPDVYEDA SDFMTSYFFDELNPDSVYSNLSRAYDDGILLRNTISTRSLAYIQLALDAMEDAKAEGSGA LCSFEVIDRLLAFWGSIDEYLSSGQERCLVKAGRYLERLDMQLRLGESWETIGVTIGKLD RRLQGAKIAYSGQKMRVLKNFAQLADDDPETRLVALETVQKLLNN >gi|301349805|gb|ADCQ01000045.1| GENE 33 37155 - 37925 351 256 aa, chain + ## HITS:1 COG:SMb20888 KEGG:ns NR:ns ## COG: SMb20888 COG1305 # Protein_GI_number: 16264930 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Sinorhizobium meliloti # 14 247 13 256 272 97 33.0 2e-20 MKKFLYSLRADLLFSEPVSNHTFVLRSVPLSEPGQEPMRISLTCQPGCRLSETFDGQGNK VFLGSIENKHTFFSFCSTGEVLVDSSQRSSFGAAAYYRYPTQLTTLTGTLKDYFEANKVE GAPIALAEYWLTKIGTDFRYQKGVTTTVTAAHEAWELGAGVCQDFAHILLAFLRAQNVIC RYVAGLTTGEGASHAWVEVFDGETWIGVDPTHQRFCDDNYVKISQGPDFSFCALERGVFM GAADQSMSAKCKLVEI >gi|301349805|gb|ADCQ01000045.1| GENE 34 37928 - 38872 654 314 aa, chain + ## HITS:1 COG:VC2282 KEGG:ns NR:ns ## COG: VC2282 COG3608 # Protein_GI_number: 15642280 # Func_class: R General function prediction only # Function: Predicted deacylase # Organism: Vibrio cholerae # 37 305 63 322 362 77 25.0 4e-14 MIEDVIKVKMPVGESLVIRKNRHLPDNVASAEGLKRLCVVSGIHGDELEGQYICYLLNKV VREKSEHLKGVLDVYPALNPMGIDTIQRGFPGFDLDMNRIFPGRTDGAATEWVASKLIQE FKGAEMAIDIHASNIFLREIPQVRVNINTADKLVKYASMLDVDFVWVHQASTVLESTLAY SLNSIGVKTLVVEAGVGMRITQDYCQRLVNGILNLMQNLGMWDGPVQPVKQPIVSLDRSV SFVNAEEPGVFVPTVRHSDNVRRGEIFGRIVDALSGEVRQECVSEVDGLLFTLREYPIVN KGSLIARILQEERR >gi|301349805|gb|ADCQ01000045.1| GENE 35 38869 - 39804 853 311 aa, chain + ## HITS:1 COG:VC2282 KEGG:ns NR:ns ## COG: VC2282 COG3608 # Protein_GI_number: 15642280 # Func_class: R General function prediction only # Function: Predicted deacylase # Organism: Vibrio cholerae # 19 305 51 325 362 60 22.0 3e-09 MKEEVIFRMESAYREDFEVKSYHFGGPEKTMCIIGNMRGNEIQQLYIAGQMVRTLKRFEE EGRFIRRHGVTVIPCANPYSVNVGKRFWAMDNSDINRMYPGYNKGETTQRIAAGIFEKIQ GYRFGVQFSSFYMPGDFVSHVRMMKTDYEDTGLAQLFGMPFVVLRKPVPFDTTTLNFNWQ VWDTKAFSLYSRSTEKIDKKGADMAIAAVCRFLSRMNVLNYNVYGGYESTVLIEEELVSL RSTASGLYIPHVKSFDSVERGQVLADIIDPLTGVTVAQTEAPEDGIVFFAKDSPLVMENE TLFKIVNKLHK >gi|301349805|gb|ADCQ01000045.1| GENE 36 39825 - 40457 672 210 aa, chain + ## HITS:1 COG:STM3985 KEGG:ns NR:ns ## COG: STM3985 COG1739 # Protein_GI_number: 16767255 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 11 210 5 204 204 156 41.0 3e-38 MADVSYNIPDLRPGEVFRVEQTIKRSRFIASVGHTPGVEEAKAFIEQIKAEFEDARHNCW AYCAGAAGSTDRIGASDDGEPHGTAGRPMLTAVTHSGIGEVTVVVTRYFGGILLGTGGLV KAYQSSVKMALEGVPTRVRTKTKRIKFSVEHRFVNQVLRKIEAVNGRILEKNFDMGADFD VEIPEDLAETFAKELEELTRGALLIEFVEE >gi|301349805|gb|ADCQ01000045.1| GENE 37 40462 - 43908 2949 1148 aa, chain - ## HITS:1 COG:no KEGG:CT1147 NR:ns ## KEGG: CT1147 # Name: sbcC # Def: exonuclease SbcC # Organism: C.tepidum # Pathway: not_defined # 108 1145 140 1175 1222 124 20.0 2e-26 MQIHAFGLSRVPTFLGQWDLDFDGRTDVFSIPLTGEKSIALFLDALKFALFDISSEKLGK NPEVRLVFSTEEGRFELLRSHENTEIRKNGMPFDLQAAPFPVAMARITHLDADKLEDTLF YDILSTSESLTENADTLASSLIGNVSESLGNAILTQGIEVSQQKAALLAASKSVIDGISV VSDEEEERLNQQLIKAGVSHAALQNEIAQLKDSMDWLIRINMLKDEAARLSKQLTAVNGD LSRFDVKKNVLEKALKTDALAPDYDVLSKLRVDEKEEGKLITELKKSVPMLSERVRSASL AHAEADKNFKSVLENYNEKCVTLERVRELDEKIEDSQIQSKHLKEELFNEQTAARLLSEE NTRLKNVLSQLTIRSQLLNKKMDDLSMDKLLVDELEEYKRLLDEIDAEVIRSAEAEETQR ELQKRIESSRSALLDVQNVIAALKNEELAVTGELSMKERMLSKSLGIEGVETLAAELDNQ NERLNALDALQGRIVLLAEGHDRFNQVKAGLESTKHALRLATVALNAARQAYIDKTAVVN SAQQAYSFYLEVLSLNEPREKLANGKPCPLCGAIHHPYSVKLPFDRSLEDKLAKAKEDAQ LALVESEKCKAEFAQLQLQQTEAENILNTLTTELNEAKGEILYIASELNIVGLREKKPIT WAAVLKQKQTSLANRRDDLEARLEKIQGLTEAIESLKEKREDAALKTARKKEEQASLEEA LKNFANMSAELEKNQKDSELNRVSLTRLLERAFARFGLKASNPAIMKQNLPTLEKRREQW INWSVEKKQIEEETAESEEALRNTVASLTAQKKSAETLEKDIEALTEQIKRFQKERHEAI ASQTPEEVIAAIETEKANATRLAEEAKLSLASKEEALLSTQNKINTLEAHRSETIKSIES LSDAFNQKLQKAGFPNESSFLSSQISTAQKDDLMRQNDELLERYRVVNSQYEEKQQALNS LQEKNLTTRTREQLEEELLEKSDLFHTATAQLTGLREKMAKNANNKNRRKREEAEFQKLQ TSLERWESLCANAEEPGGIARLGLSLAVAYGSSDIDAFIPGAKIKLRDEGVKLFAPELSD ASGLAGMKTISADQRFFVALSLLLGRSELFARRSKPEFVILKQNQNEAFPSQTFTGLESL NLTIGVAR >gi|301349805|gb|ADCQ01000045.1| GENE 38 43931 - 44209 528 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859674|gb|EFL82753.1| ## NR: gi|302859674|gb|EFL82753.1| putative L-Lysine transport protein [Burkholderiales bacterium 1_1_47] # 1 92 1 92 92 154 100.0 2e-36 MFAYPIIIAAMIASGLFIGWINFSYLWGMIPAVIGGFCGSYYSKFGRMLLKPGIDDYQRE KILSVTRVLTIMWTVISAIFFALGYGLTKVAY >gi|301349805|gb|ADCQ01000045.1| GENE 39 44303 - 44743 644 146 aa, chain - ## HITS:1 COG:no KEGG:Clim_2386 NR:ns ## KEGG: Clim_2386 # Name: not_defined # Def: hypothetical protein # Organism: C.limicola # Pathway: not_defined # 1 145 38 171 173 119 53.0 2e-26 MGLFNTILQKLGFVKDKAVEAVAGENAAAAEAPVSPVEAAAVETVAAAPAAAETPAGSPE IVDVAAVCEALAAKNPQKLNWKTSIVDLMKLLGMDPSLANRKELAKELGCPENLIGGDYS QMNVWLIKAVMQKLAENGGKVPEDLK >gi|301349805|gb|ADCQ01000045.1| GENE 40 44961 - 45614 430 217 aa, chain + ## HITS:1 COG:TP0100 KEGG:ns NR:ns ## COG: TP0100 COG0526 # Protein_GI_number: 15639094 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Treponema pallidum # 4 188 15 199 200 82 25.0 8e-16 MKKLLVLSCLAGTVLFSSVPKAADFDRVYETGTPLKAPRMMPNFRELKHALKMPQFDLKT IYGTDVNLSDYKGKVIVLNVWATWCRPCVAEIPELITAQKALKNSDVRVIGVAVDGENVD LKKFLDKIRASGFETFIDGNQAIPGKMGVSVVPTNFIIDGNGNLVAYAEGYLPWENPQII SFLKEIGKKYASGPSAAKKPASAPVGSVGSVFKISQF >gi|301349805|gb|ADCQ01000045.1| GENE 41 45712 - 47358 1065 548 aa, chain + ## HITS:1 COG:CAC0367 KEGG:ns NR:ns ## COG: CAC0367 COG4187 # Protein_GI_number: 15893658 # Func_class: E Amino acid transport and metabolism # Function: Arginine degradation protein (predicted deacylase) # Organism: Clostridium acetobutylicum # 6 547 5 548 549 224 28.0 3e-58 MKTAQSSRILQLTKKLCAIPSVSGSAAEENRCADFITHCLFCLAQKHPGRVRVFEPVCER DPLERKAVFGLLRAAVPTDKTVVLTGHFDVVDTQNCGDKVQTAFDLERYTEALREQPLDE TARKDLESGNWLFGRGSMDMKAGLALFLASMEEWADDPTLAVNILFWAVPDEEANSAGMI GSLRTFLHICEEEHLKVVAALTGEPCFWTAETKTVPAVRPYYTGTTGKLMPFFYAFGKSA HIGNYLHGFSAALLISEIVCLAEADTALYEGSGLDLLAPPACLSMEVHRNGYSVTVPEEA SAYFNVLTAAKKPADVLRWAQMTAARAAAQARSKLMRALLFAQDKGADFPDIDEVNVVTF GMLQRMARQKTGESFEEKRDHFYRSLPKDLDIREAALKECSWLFLQAQMPRPTIVVGFLP PYYPARLNRRQSPDEQKLRKVMEEMTEQAKVLSKDEAVRLHEVFGGITDLSFLGFEEMRE GAKQVGENMAGWKKLFYLPTDLPGALDIPIANMGPAGRDAHRSTERLELDYSLNIAPKLL AETIQKLS >gi|301349805|gb|ADCQ01000045.1| GENE 42 47406 - 49475 2103 689 aa, chain - ## HITS:1 COG:RSc0791 KEGG:ns NR:ns ## COG: RSc0791 COG0008 # Protein_GI_number: 17545510 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Ralstonia solanacearum # 381 689 279 580 580 370 58.0 1e-102 MTENKEKAQSSHITNFLRNIINEDLKQGVNDPRHWCGHPGTYTEQMEGPIDEAKVRLRFP PEPNGYLHIGHAKSICLNFGLAKDYAGRCHMRFDDTNPVKEDQEYVDSILGSVNWLGFDW KDAKETNFYFASDYFDYMYEIAEHMIKNGLAYVDEQTAEQIKENRGTLHTPGVDSPFRDR PAEESLRLFREMREGKHPEGSMVLRSKVDMSSRNINLRDPAIYRIRFAEHHRTGDKWCIY PMYTFAHPLEDVLENITHSICTLEFEDQRAFYNWATERSVPITRAPLFEKAKAVLADLQK KSFEEIKPFAEAAVKFKWKLGQTETERELASLLADIKANPENLNDASAHAIVNAVAAKPE VFTPLLQDVLSATVKPNFFLLPHQYEFNRLNLTYVVMSKRKLIALVKEGLVDGWDDPRMP TLVGLRRRGYSPEAMRLFCDRVGVSKQTGSWIDYSVLEGSLRDVLDAEADRRIAVQDPIK LIIDNYPEDQIEEFESPNHPQHLERGSRKLSFGKELWIERSDFAEEPPKGYRRLTLATAD KPAMPVRLRHAYVVQATSVEKDSDGKITAVHAEYFPETKSGTDGANSIKTKAAIHWLSVK DALPATIRLYDRLFTVPKPDAGEVDFRELINKNSKTVMQSYVEPSLKDAKPEDRFQFERN GYYVADQKDFTPDNLVFNLAVALKDTFGK >gi|301349805|gb|ADCQ01000045.1| GENE 43 50052 - 52625 2279 857 aa, chain + ## HITS:1 COG:PAE2859 KEGG:ns NR:ns ## COG: PAE2859 COG0243 # Protein_GI_number: 18313640 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Pyrobaculum aerophilum # 9 855 3 816 816 637 41.0 0 MSDKIVNLSVSRRTLMKGGALAAAAAASPCLPNLAFAEQIKKLEQEGWTKRPVACTMCGA FCGLIEMRKEGEPVSEKTVRIFPNPGHPQQGYCGRSAATMWVWNHPLRLKKPLKRVGEKG EGKFKEITWDEALDGIAGQLKTIVEKYGESSIASTSHTFSGFSKWITLPLGSPNSIGHAS SCNAGGISGRQWVFGKGFDGAGKMEPDYANLRYLLLIGRSMGAAMGALHTLNVARANGAR VVSIDPRMPDISYGDVDWVGIRPSTDAAFVMGLINRMIQDGTADFDFIQKHTNGAYLVRE NGHPLTQADFVAGGDKTKYAVANAAGEISFRGLKKNETGEMVFDEDPSFKAILEDVAPVK LVDGITIPVKTAFEVVKETAAPYTPEKVFEITGVEPGILLRIAKDFTNLKGVIDDGWYTS KNGTDVQLYQLICIANAMNGNIDIPGGLVVTVGAGLKIPSVSAGKGPNGETWQMAKEKRI DKIVYPEASATFKVALQAAVTGKPYPIKGVFFVGTTMFHREANSQELAEQLKKLELCVVQ DVLPQELVDYADYVLPATYFMERKEMAGVKWALDGSIYLSDPGLTPPKGCEARHDVWILL EILRRAFPEKAARVGYKECKTAEEFNKYFDAFTNKGFNKFLAQCESQKPGWAAKIKKDIE TQGWSTIKTKKYNQYPYHKPFGTPSGKVEIYAFQSFKNEAYEKAIAPISGYIPSPAFTAP KQNSNEFILASGKNCVTCSGLNMFTQPTRYLGDRTVWMNPVDAQRLGIKNGDMAEIEGID TNYVGQARITVTNKVVPGAVFAFGFSGGNRTKHLVNDPEYQFVKEGINSHWYATGYAQPV FGNVANNSSVRIKKVRG >gi|301349805|gb|ADCQ01000045.1| GENE 44 52629 - 53207 521 192 aa, chain + ## HITS:1 COG:PAE2860 KEGG:ns NR:ns ## COG: PAE2860 COG0437 # Protein_GI_number: 18313641 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Pyrobaculum aerophilum # 7 190 3 186 188 180 50.0 1e-45 MVQKKKQLAHLFDATQCISCGACILACSQTNFPEMHNQSIPGRNWPASNIRIFRSEERRP VNLLVQCQQCENAPCVKTCPFGANYYDENGLVRNDPDKCVGCNYCIASCPYDARWSHPIT GLPMKCISPGCMEMINEGKQPACVQACPAEARLFGDILDPQSEISKKIASSRTELLMPNK GTKPNFFVVVSK >gi|301349805|gb|ADCQ01000045.1| GENE 45 53204 - 54091 1061 295 aa, chain + ## HITS:1 COG:PAE2861 KEGG:ns NR:ns ## COG: PAE2861 COG3301 # Protein_GI_number: 18313642 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Pyrobaculum aerophilum # 18 253 11 246 290 98 35.0 2e-20 MIELTSFTPQLQAAHWGWTIAIFLWLVGLAGMGFFLNYWIRQKNFVYLLTVSGILGTLLV VSHLARMLNLPFAVFSALADFSFNFQSWMFIGICLLSLLCIGSVFYSMICAKIIFKSEYW QNMTKSNWFNGIFAALGVCCTIYSGFLLTQAVGISLWNTALIPLLWIMSGMASSIGCIEL FMIMKWIDPDTVRWSRRTSFWVEVAELFTIFAFVHVALGSALAGARAGAEALISGPHAVM FWVGVIILGSVVPLLLNLLTRSHKILACSAILGIIGALLLRASILFSGYYDPIMF >gi|301349805|gb|ADCQ01000045.1| GENE 46 54655 - 56163 1659 502 aa, chain - ## HITS:1 COG:RSc0793 KEGG:ns NR:ns ## COG: RSc0793 COG3333 # Protein_GI_number: 17545512 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 502 1 500 500 639 67.0 0 MDLLNNLAVGFATALSLQNLLYCFLGVTLGTLIGVLPGLGPVATLAMLLPITYTLDPTSA LIMLAGIYYGSQYGGSTTAILVNLPGESASVVTCLDGYQMARHGKAGTALGIAAIGSFIA GCFATILVAAFAPPLIELAFKFGPAEYFSLMVLGLVGAVVLANGSVLKAFAMIILGLLLG IIGADVNSGTFRFDFGIAELQDGIDFVAISMGLFGFTEIIVNLSKGETRDSITEKVGSIW PSRKELCKAAPAITRGTLLGSFLGILPGGGALLASFASYTLEKKVGGKNANPPFGKGNIA GVAGPESANNAGAQTSFIPMLTLGIPCNATMALMIGALMIHNITPGPQVMSSNPTLFWGL VVSMWIGNLMLVILNLPLIGVWVQLLRVPYGLLYPMILTFCCIGVYSINNNPFDVYITII CGALGYLFAKLKCEPAPLILGFILGPMMEENLRRAMLLSRGDPSTFFTRPISLVLLMMAI FLLLLILLPSIKKGREVAFKED >gi|301349805|gb|ADCQ01000045.1| GENE 47 56175 - 56645 276 156 aa, chain - ## HITS:1 COG:no KEGG:Rmet_3963 NR:ns ## KEGG: Rmet_3963 # Name: not_defined # Def: hypothetical protein # Organism: R.metallidurans # Pathway: not_defined # 2 155 14 163 164 92 39.0 3e-18 MIKDQRDFWAGLMFMAFGGFFCLYSVYNYNIGTAFRMGPGYFPMLLGGFLFFLGFLITAK SVLFKSSEEDGGKFGKFDWYNFFVILGSVTIFAVLLRPAGLIPATAVMVFLSSFGNRPFR WIRTFLLCVFLSVAVWLIFVLGLDLTVPIWPAFLTN >gi|301349805|gb|ADCQ01000045.1| GENE 48 56710 - 57693 1306 327 aa, chain - ## HITS:1 COG:AGl312 KEGG:ns NR:ns ## COG: AGl312 COG3181 # Protein_GI_number: 15890266 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 327 8 329 329 206 40.0 4e-53 MTIKFTRRSVCALGAAALGCAAFPPFAAEDPIRIIVPYPPGGPLDVTARAVAEEARHDLG NIIVENKPGAGGNIGVDYVAKQAPDGKTIVMGALATHAVNPNLFSKLPYDPIKDFTPITL IAQTPNVLVITPEFSQKTGIKSVKDLIEYARKNPDAINYASGGNGSAGHMSGELLKNATG IKIVHIPFKGAAAAQMSVLSGDTQMIFDNLASASANIKAGKLIPLAVTTTFRAPSLPNVP TMAEAGVLGFDISTWYAFFGPAKMDPKVVEKLNQAFVKAIKSKPMAERFDKMGAVEKAGT PAQLNDFVKAELVKYKEIVKTSGAKVD >gi|301349805|gb|ADCQ01000045.1| GENE 49 57976 - 58734 495 252 aa, chain - ## HITS:1 COG:RSc1283 KEGG:ns NR:ns ## COG: RSc1283 COG0664 # Protein_GI_number: 17546002 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Ralstonia solanacearum # 8 238 6 236 242 183 40.0 2e-46 MASNFTQSLSANRAGCAGCYLRHFCLSADLNDAETEIFSSHIVSQRRVPKGEILFRAGDP LDTLFITRLGSFKSSVLNENGSEQVTDFHMTGEVLGAEAIPTGYHICTVTALEDSEICSL RYRELEAFCDRDLKIARQFRLLLGRKIVAAHQNLLILGCTNSTQLLASFLLNLARKFEAR GFSKSEFVLRMTRGELGSFLGLKLETVSRTLTHFDELNLIEINQRHVRIINLEGLKAVAK ESGRAKRKTSQE >gi|301349805|gb|ADCQ01000045.1| GENE 50 58861 - 60261 1715 466 aa, chain + ## HITS:1 COG:NMB0379 KEGG:ns NR:ns ## COG: NMB0379 COG0635 # Protein_GI_number: 15676293 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Neisseria meningitidis MC58 # 13 466 20 473 473 491 51.0 1e-139 METQGKLNVEFPDLELLQRFDVPGPRYTSYPTADRFTKEFGAEDFKKVLNARGTGDNTAD LSLYVHIPFCANVCFFCGCNKEVTKDHCRSKEYLEVLSKECELVSAQIGGNKEVVQLHFG GGSPTFLNNEEIFQVMDIIRSHFTLAPDAEISIEVDPRSTPVDKVEVLAKAGFNRMSIGV QDFDNRVQIAVNRVQPFEMTKAVLDAARANGFKSINMDLIYGLPFQSRKTFEMTLDKVIE LSPDRIALYHFAHLPEHFKPQRRINAEDLPSTPEKVGIMMDAIKRLSANGYHFIGMDHFA KVTDELAKAQENGTLQRNFQGYSTKPECDMVALGVSSISKVNGCYAANPRDLESYYAAIR SGNLATNRGYLLNDDDRLRAKVIMELMCQFKVVKADIEKKFGINFNEYFDFELNNLKHFE AEGLVRLEPDFIEVTPKGKLLVRAVAMNFDRYLREDERVRRYSRIV >gi|301349805|gb|ADCQ01000045.1| GENE 51 60454 - 63081 3221 875 aa, chain + ## HITS:1 COG:RSc0797 KEGG:ns NR:ns ## COG: RSc0797 COG0013 # Protein_GI_number: 17545516 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Ralstonia solanacearum # 4 874 3 884 884 1018 58.0 0 MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRNPHIQEVL RQEEVRFSQTLSKGLDILNEALASGTKILGGDVAFKLHDTYGFPVDLTADVCREKNVSVD FEGFDALMEKQREQARAKGKFKMAQGLEYEGKPTEFLGYDTLTVQACRVEAIYKDGEPVK DAEAGDEVVVVFDRTPFYAESGGQMGDKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEG EVKVGDLFSAQVDEENREATARNHSVTHLMHKALREVLGAHVQQRGSMVNGDRTRFDFVH TSPMTREQINEVEDIVNKEILRNAPTQTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIGS SCELCGGTHVQRTGDIGMFKIISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEEL KAPALEVVSKVVDTVEHLKRTEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGI ETKELRNSVDGLKDQLKSGVIVLIKSEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQLGG KGGGRPDFAQGGGAAPADMNALLGKTRTFITEKLA >gi|301349805|gb|ADCQ01000045.1| GENE 52 63201 - 64220 1189 339 aa, chain - ## HITS:1 COG:BMEI0921 KEGG:ns NR:ns ## COG: BMEI0921 COG1087 # Protein_GI_number: 17987204 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Brucella melitensis # 5 337 3 334 335 402 58.0 1e-112 MKKHILVTGGTGYIGSHMVVRLIEAGMEPIIFDNFSNSKPAVVDRIEMITGKRPTLVRGD IRDEKALEKLFADFPIDAVINFAGRKAVGESETDPLLYFSYNVEGTIVLLRVMKKFGVKE FVFSSSATVYGDPGYDEFDENTPLAPINNYGLSKWMIEEVLRKTFKAEPDWSIAILRYFN PVGAHESGLIGEDPNGIPNNLMPFISQVAVGRRASLKVFGNDYPTRDGTGARDYIHVQDL VEGHLDALRVLDGKPQLLTVNLGTGGNTTVLELVKAFEKASGKHIPYEICPRRAGDKAAY WTNPELAKKLLGWTAKRGIEKMCEDTWRWQQMNPEGYPD >gi|301349805|gb|ADCQ01000045.1| GENE 53 64293 - 64946 925 217 aa, chain - ## HITS:1 COG:RSc2533 KEGG:ns NR:ns ## COG: RSc2533 COG0563 # Protein_GI_number: 17547252 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Ralstonia solanacearum # 1 216 1 221 222 302 70.0 3e-82 MRLILLGAPGAGKGTQAARICEHYGIPQISTGDMLRAAVKAGTPLGLAAKKIMDAGELVS DDIIIGLVKERLEKPDCKNGFLFDGFPRTIPQAEALVKAGIPIDDVVEIAVPDEVILKRM SGRRVHVASGRTYHVKFNPPKVEGVDDVTGEPLIQRPDDKEETVKKRLEVYHTQTEALVG FYQSLAAKGDSKTKYIKIDGVGDVNEVSRRIFDALDR >gi|301349805|gb|ADCQ01000045.1| GENE 54 65069 - 65827 778 252 aa, chain - ## HITS:1 COG:HI0058 KEGG:ns NR:ns ## COG: HI0058 COG1212 # Protein_GI_number: 16272032 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Haemophilus influenzae # 1 249 1 251 254 263 54.0 3e-70 MSFTVIIPARLASTRLPNKPIADICGKPMIVRVAEQALKSGASRVICAVDDELILKACEA NGIEACLTRKDHACGTDRLCEAAEVCKIPDDEIIVNVQGDEPLIPPKVIKNVAELLMNHS DCSMGTAAIRIHSAEEFFNPNVVKVVADKNGSALYFSRAPIPWDRDGFAKDRNALPRDLG LRHVGIYSYRCAFLKAYPQLPKSDLESWESLEQLRALYNGYKIAVDIFEEEIPPGVDTLA DLEAVRAYLQKK >gi|301349805|gb|ADCQ01000045.1| GENE 55 65824 - 66018 229 64 aa, chain - ## HITS:1 COG:msl4429 KEGG:ns NR:ns ## COG: msl4429 COG2835 # Protein_GI_number: 13473733 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 1 58 13 70 81 58 46.0 3e-09 MDAKITEILVCPLCKGPLLWNEKKKEFYCRSDMKAFPVIDGIPCMVPTEAREMKEEEIEE LDKK >gi|301349805|gb|ADCQ01000045.1| GENE 56 66030 - 67076 1139 348 aa, chain - ## HITS:1 COG:RSc2530 KEGG:ns NR:ns ## COG: RSc2530 COG1663 # Protein_GI_number: 17547249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Ralstonia solanacearum # 2 345 5 346 349 230 44.0 4e-60 MQVQLETFLHKQWDRKGLISWLLLPASAVFLSMAASRRRKTVPVKVGVPVVVVGNIYVGG TGKTPVTIALVKDLKERGWNPGVISRGYRGKAESPVEVRLDSNPDIVGDEPLLIKKATDA PTFVCPKRVEAAEALLKAYPTVNVIISDDGLQHYSLHRDVELAVVGARGLGNGWVLPAGP LREPPSRLDEVDAIVLNATEDIVTSSTPRYVATSGFTNAVNYATGEIVSLDTLSRMQFKK GLKAVAMAGIAVPERFFSMLKAHGLEVRPIALPDHYDYSKNPFKDCEADLIFITEKDAVK CRKHADLKNDERIFVVPLETKLDKFLVDFVEKKITAAAKKSKEAAQQL >gi|301349805|gb|ADCQ01000045.1| GENE 57 67560 - 69293 744 577 aa, chain + ## HITS:1 COG:PM0168 KEGG:ns NR:ns ## COG: PM0168 COG1570 # Protein_GI_number: 15602033 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Pasteurella multocida # 1 269 1 270 445 239 48.0 1e-62 MTDKAFSVTQFVDIVNLSFEQFESVAVEGEISTSTKASSGHWYFSIKDEEAVLSCAMFRG KLYSVRGVFKVGDKVRVTGKPNLYPGSGKLTFICSKIEAAGEGKLYELFLRLKNELTALG WFDQSRKKAIPRVPRTIGIITSRTGAALQDVMNRLRARAPYVRVLLYHTAVQGKGAEAEI AQRINKANQDNKADVLLLVRGGGSLEDLWCFNEKIVAEAIVNSHIPIISGIGHETDTTIA DFAADFRAPTPTGAAEAAAEKQSVLFWEIDSAWVLLHRSFENQFNRALQDVENESRPFEN PQAFLETFRHHLSAVSHLQRPVLGYYRQNLNSLKSRLQLDMQNFLSSSLEREKFAARYFI SPSRFIEPYEKRLQAASPILRLDTAAMRSRIDLIFSSINTAQSACLRMNRAELGVAEENL QAEMDVKIRSAGDALRLAAPQMTYAFAFQGSRCNELFAMISGVVQSTIAANRKVLLKESS WLKRSRPKLDRRPLNAACNSVRSSLIQKFERDTIRLRSLEQVWELLDPSKQIRGNSAFIY RGGKPVMSVSELKEGTDIEVMMKDGAFVARVGEIKKD >gi|301349805|gb|ADCQ01000045.1| GENE 58 69345 - 69929 363 194 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 187 1 191 201 144 36 1e-33 MAFTVPPLPFAMDALEPYMSSKTLSYHYGKHNKAYNDTLNNLIKGTDYETMPLEEIIRTT QSGPIFNNAAQCYNHTFFWNSLKPNGGGQPTDVIASQINAKWGSYDAFADAFTKSAVGNF GSGWTWLVEKEDGTLDIVNTSNAGTPITGTDSPLITCDVWEHAYYLDYYNMRVTFVQTFL QHLVNWDFAAKNYK >gi|301349805|gb|ADCQ01000045.1| GENE 59 70045 - 70392 371 115 aa, chain - ## HITS:1 COG:no KEGG:Sputcn32_3388 NR:ns ## KEGG: Sputcn32_3388 # Name: not_defined # Def: hypothetical protein # Organism: S.putrefaciens # Pathway: not_defined # 1 112 1 113 116 63 32.0 2e-09 MKKTASLLVVLAALFTMSSTFSAEAPKFGADRHVAHGMACASCHGPDGKSPEYPDQETCL KCHQKDALIEKTKAIGPVNPHKAPHNGECTLCHLQHEAPVNYCAECHPQFKFNPN >gi|301349805|gb|ADCQ01000045.1| GENE 60 70606 - 72153 2338 515 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 15 512 18 477 484 179 30.0 2e-44 MSTNRRDFLKLAGAAAAAITSTAAAHAGVPASSVAKFDDEYDVVIIGSGFAGMACALKAG QAGKKVLILEKMPTVGGNSAICGGNVACPVNPVQAAQGIKDSKELFIADCLKDGLGINYP NLLGTIADRCNDTIKMVVDCGCEFVPNKMLFEAGHSVPRSYEIKAGTGSGYIIPMHNELK KLPNVKIMTRAKFDDFILDENGRVVGVTYRKGYRFDSKLQSDDIENKSGRPATVKAKNGV MLAAGGFSRDIFFRQAQDPRVVPTTDSTNQPGATAGVLIKALGIGAQPVQLCWLQFLPYC NPREKGFGVSVNFTNHACMDLGLVVDRKTGKRFMDEHAGRKIKSDALFKVIGTDENYPIA ICDDAIVKAINPSFVKLPLEMGTVKKFDTLEQLADAFGIPKQALLDEVAKFNGYVKANDD KDFHRILTFNKGLDVSKAPFYGIEVSPKIHHTMGGVMINENAEVISANTHKPIPGLYAGG EVAGGVHGASRLGTVAVIDALTFGMIAGENFAKMQ >gi|301349805|gb|ADCQ01000045.1| GENE 61 72225 - 72515 303 96 aa, chain - ## HITS:1 COG:RSc2494 KEGG:ns NR:ns ## COG: RSc2494 COG1430 # Protein_GI_number: 17547213 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 91 60 150 150 112 53.0 1e-25 MFRKHLPENSGMLFVMDRSDAVCMWMKNTLIPLSVAFIDKDGFIINIEEMKPLTLDIHCS KAKAFYALEMNESWFEKNHVKPGDKISRLPQLRQTN Prediction of potential genes in microbial genomes Time: Fri May 13 06:36:54 2011 Seq name: gi|301349804|gb|ADCQ01000046.1| Burkholderiales bacterium 1_1_47 cont1.46, whole genome shotgun sequence Length of sequence - 9626 bp Number of predicted genes - 9, with homology - 9 Number of transcription units - 4, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 52 - 255 329 ## COG1278 Cold shock proteins - Prom 362 - 421 6.7 - Term 624 - 653 -0.5 2 2 Op 1 5/0.000 - CDS 675 - 1121 564 ## COG0756 dUTPase 3 2 Op 2 . - CDS 1126 - 2322 966 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 4 2 Op 3 16/0.000 - CDS 2336 - 2839 483 ## COG0597 Lipoprotein signal peptidase 5 2 Op 4 16/0.000 - CDS 2839 - 5709 3845 ## COG0060 Isoleucyl-tRNA synthetase 6 2 Op 5 . - CDS 5754 - 6791 408 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 - Prom 6816 - 6875 1.8 + Prom 6711 - 6770 4.0 7 3 Op 1 1/0.000 + CDS 6906 - 7556 507 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 8 3 Op 2 . + CDS 7583 - 9217 1682 ## COG0144 tRNA and rRNA cytosine-C5-methylases + Term 9234 - 9278 5.1 + Prom 9311 - 9370 8.9 9 4 Tu 1 . + CDS 9395 - 9626 215 ## gi|302858722|gb|EFL81825.1| transposase Predicted protein(s) >gi|301349804|gb|ADCQ01000046.1| GENE 1 52 - 255 329 67 aa, chain - ## HITS:1 COG:RSp1053 KEGG:ns NR:ns ## COG: RSp1053 COG1278 # Protein_GI_number: 17549274 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Ralstonia solanacearum # 1 67 1 67 67 102 79.0 2e-22 MATGTVKWFNDAKGYGFITPDDGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGEKGKQ ADNIKPA >gi|301349804|gb|ADCQ01000046.1| GENE 2 675 - 1121 564 148 aa, chain - ## HITS:1 COG:RSc2463 KEGG:ns NR:ns ## COG: RSc2463 COG0756 # Protein_GI_number: 17547182 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Ralstonia solanacearum # 1 148 1 148 148 216 68.0 9e-57 MKLQIKILDPKIREKMPSYASLGSAGLDLRAVMDEPLVLQPGETKLIKTGLAIYIGDPGY AALILPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRSQTPFTIEPMERIAQLVIVP VVQPTFEVVDEFVATERGTGGFGSSGRH >gi|301349804|gb|ADCQ01000046.1| GENE 3 1126 - 2322 966 398 aa, chain - ## HITS:1 COG:RSc2461 KEGG:ns NR:ns ## COG: RSc2461 COG0452 # Protein_GI_number: 17547180 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Ralstonia solanacearum # 1 391 1 394 401 325 46.0 7e-89 MSLQGKHILLGVTGGIAAYKACELLRLLVKAGADVEVMMTKAAAQFVGPLTFETLSGKPV AEDMWDPKMRLPHISLRKNKDLIVVAPATANIIAKAANGIADDLVSSTLLARECPLMLCP AMNVQMWRNPATVRNVRTLKGDGVLFSGPEAGNQACGDVGEGRLREPAQILEDVEAFFTP SILSGKKVLMTAGPTFEPFDPVRGITNGSSGRQAAAIAAAAIRAGAEVTIVSGPVCVSYP DKAAVIPVRQAQEMFEAVKKELAEHTPDTFIGVAAVGDWRPVEYSESKLKKEKGQDTLTI KLIKNPDILSYVGHSGLCSAVIGFAAETDNLAENARKKLDSKAADMIVVNPASAIGSTQN QASFVTKNGIEAKELSSKAELAEEIIEALADLLKKRVI >gi|301349804|gb|ADCQ01000046.1| GENE 4 2336 - 2839 483 167 aa, chain - ## HITS:1 COG:RSc2459 KEGG:ns NR:ns ## COG: RSc2459 COG0597 # Protein_GI_number: 17547178 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Ralstonia solanacearum # 19 162 25 168 173 138 52.0 6e-33 MRKTVSSVRQWNWPALLGWLVFALALTGFDQWTKNWIQHRLITGDVDRITDFFNLVVAYN SGAAFSFLADAGGWQRPLFAGLAIVVSLVICVIIARNSSRKFLCLGLALVLSGALGNAWD RFTIGVVVDFLDFHVGSYHWPAFNVADICICCGAGIVVLAEFFGKKN >gi|301349804|gb|ADCQ01000046.1| GENE 5 2839 - 5709 3845 956 aa, chain - ## HITS:1 COG:RSc2458 KEGG:ns NR:ns ## COG: RSc2458 COG0060 # Protein_GI_number: 17547177 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 956 1 960 960 1167 58.0 0 MTDSSQKKQPQTEEKKYPLNLPDTPFPMRGNLPKREPAWIKEWLEKDVYGKVRAARKGAK RFLLHDGPPYANGNIHVGHAVNKILKDIILKSRTLEGFDAPYVPGWDCHGMPIEIQIEKK YGKNLPKEEVMAKCRAYAKEQVKSQMDGFQRLGVLGDWNDPYLTMRPETEAEEIRALGEI LGKGFIYRGLKPVNWCFDCQSALAEAEVEYKDRQSPTLDVAFPISDEDRGKLEDIFGVKL EKPTAVVIWTTTPWTIPANQALNMHPDLEYVLVETPNRSFILAEGLYEEALKRYGMEGKV IAKAKGEAFKGIRFKHPLATLDPFYDRFSPVLLADYVESTSGTGIVHSAPAYGVDDYISC KSAGFSNDEILNPVQGNGEYAASLPLFGGLNVWKAKNKILDTIAVTGNLLSRGEVMHSYM HCWRHKTPLIYRATNQWFIRMDEANADTQGVINENDPKDPLRKTALEAVEATQFVPEWGE VRLHNMIANRPDWCISRQRNWGVPLPFLIHKETGKLHPETMKILNKVADVVEKEGIEAWT RLTPTELTDLEPEMYEKSKDTLDVWFDSGTTHMTVMRGSHADKLTYPADLYLEGSDQHRG WFHSSLLTGCAIDGRAPYKGLLTHGFTVDEQGRKMSKSLGNVIAPSEINDKYGAEILRLW VASSDYTGEISLGEKILKGTVDAYRRFRNTIRFLLANTSDFDIKKDAVPVEEMVELDRWA IARMKSLQEEILDKYDHYQFHTAYAALQLFASGDLGGFYLDILKDRLYTTAPDSAARRSA QTALWYITDALLKLLAPALSFTAEEAYAVFNPENKGTIFVERYAELPNVKEGVELLNKWS IIRDLRSNVQMEIERQREKGLIGSSLQAEVSLKLPQEEYDLIKGLGDEAAFVMITSKVTL DGVSPERVITVKPSEAKKCERCWQYKESVGEDKNYPTLCCRCVGNLFGTPETRRFA >gi|301349804|gb|ADCQ01000046.1| GENE 6 5754 - 6791 408 345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 29 345 4 316 317 161 35 2e-39 MSFIISGSDHFYSCPNSVFETDYFVHGTLRMKKVFRGLPSPEERLDCAVAIGNFDGVHRG HQALLHEVVEAAHARLLCPAVLTFEPHPREFFNPEDAPRRISSLHDKVEAIEACGIQRVY ILRFNEHLASLSPCDFVKEILVDGLHARWVTVGENFRFGDKRAGDIKLLEQLGKEFHFEV HPMPMLFHTHAPISSSRIRHALAEGDIPTANYMLGRPYMISGRVLHGKQLGRTLGFPTIN QRILPPHSKAKPAIEGVYAVKAHGIGPRPIEGVACVGRRPTVDDHGEYLLETHLFNFHGD LYDQDVKVEFFSKIRDEKKFCSLEELRAAIADDQLKAKQILGLRI >gi|301349804|gb|ADCQ01000046.1| GENE 7 6906 - 7556 507 216 aa, chain + ## HITS:1 COG:RSc2454 KEGG:ns NR:ns ## COG: RSc2454 COG0299 # Protein_GI_number: 17547173 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Ralstonia solanacearum # 3 210 2 205 216 234 57.0 7e-62 MSKNIVVLISGRGSNFKAVYERSVQENWPEKYGVRISGVISNRPEAGGLTFAKENNIPFK VIDHKEYPTREAFEEELIKACEDFDADLIVLAGFMRVLTSLFVNAFEGRILNIHPALLPM FPGLHTHERALEAGIRIHGVTVHFVSAVLDGGAIVGQAAVPVLAGDTPDELAARVLKQEH ILYPRAVRLVAEGRVRLENGRTIMDRGASQELAILG >gi|301349804|gb|ADCQ01000046.1| GENE 8 7583 - 9217 1682 544 aa, chain + ## HITS:1 COG:RSc2453 KEGG:ns NR:ns ## COG: RSc2453 COG0144 # Protein_GI_number: 17547172 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Ralstonia solanacearum # 71 485 6 415 417 346 47.0 7e-95 MESKTNRSGAARPGRRREAPKRHLTDRQRAAKERLARMSPEERRTHDPKKAPNPRMKSTH NGEVRITSLIVDELAKALRKILKLDGPADVLMSLYFKNARHLGPRERTIIAEAIYYTMRH LSMITWRMAPVCPAKAPKLTGLLTLALQYGIDSIPDSTLGREKEPLKNMLRPKNSEAPKE IQAEVPKWLYDKAVVQYTDHKALFEAMQQSAPLDLRVNTLKATPDEVIEELTQHGVQAEK GQYSPECVRLNIKPALTQWPIYKEGKVDVQDEGSQLIARLVQPKRGEMVCDFCAGAGGKT LALGALMKSTGRIYAFDVNEKRLAGLTPRMRRAGLSNIHPAVIRNEHDLRVKRLYGKMDR VLVDAPCSGTGTYRRNPDLKWRFGEEELDRINEIQKSVIRSAAKMLKAGGRLVYATCSIL QRENQDVINDFLAENPDFRLLNSYEILGKQGIEISPYQAQRFGDFFAMLPQLNGTDGFFG AVLEKVKPESKRKAPKAEEDKASDVPAIEQKEEGQPETGAPAEAVQADKPSEEAKEEVTE QAKA >gi|301349804|gb|ADCQ01000046.1| GENE 9 9395 - 9626 215 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858722|gb|EFL81825.1| ## NR: gi|302858722|gb|EFL81825.1| transposase [Burkholderiales bacterium 1_1_47] # 1 77 1 77 307 158 98.0 9e-38 MKTPQLPPLIIKKSPSAFYVYTYKNKWDPEKKRSYRASFKKVGSVTSGEKEGRIRWDDHF LAERPELRDFICERKGK Prediction of potential genes in microbial genomes Time: Fri May 13 06:37:23 2011 Seq name: gi|301349803|gb|ADCQ01000047.1| Burkholderiales bacterium 1_1_47 cont1.47, whole genome shotgun sequence Length of sequence - 39596 bp Number of predicted genes - 38, with homology - 37 Number of transcription units - 23, operones - 13 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 298 - 337 6.8 2 2 Op 1 16/0.000 - CDS 353 - 520 239 ## PROTEIN SUPPORTED gi|217969673|ref|YP_002354907.1| ribosomal protein L33 3 2 Op 2 . - CDS 533 - 766 365 ## PROTEIN SUPPORTED gi|74318607|ref|YP_316347.1| 50S ribosomal protein L28 + Prom 1002 - 1061 3.5 4 3 Op 1 . + CDS 1090 - 2046 458 ## PROTEIN SUPPORTED gi|229229955|ref|ZP_04354520.1| SSU ribosomal protein S1P; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 5 3 Op 2 . + CDS 2024 - 2500 288 ## COG0350 Methylated DNA-protein cysteine methyltransferase 6 3 Op 3 . + CDS 2510 - 3001 508 ## COG2606 Uncharacterized conserved protein + Term 3035 - 3071 7.1 - Term 3017 - 3065 4.5 7 4 Op 1 . - CDS 3117 - 4151 715 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 8 4 Op 2 . - CDS 4196 - 4885 599 ## COG1401 GTPase subunit of restriction endonuclease - Prom 5009 - 5068 5.2 + Prom 4965 - 5024 5.2 9 5 Op 1 9/0.083 + CDS 5156 - 5368 326 ## PROTEIN SUPPORTED gi|171058469|ref|YP_001790818.1| ribosomal protein S21 10 5 Op 2 5/0.083 + CDS 5399 - 5845 239 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 + Term 5858 - 5900 8.8 11 6 Op 1 . + CDS 5954 - 7903 1353 ## COG0358 DNA primase (bacterial type) 12 6 Op 2 . + CDS 7906 - 9219 1066 ## COG1757 Na+/H+ antiporter + Term 9300 - 9334 -0.5 13 7 Tu 1 . + CDS 9571 - 12015 2681 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 12032 - 12071 7.3 + TRNA 12336 - 12412 97.4 # Met CAT 0 0 14 8 Tu 1 . + CDS 12945 - 13127 102 ## + Term 13166 - 13207 -0.2 + Prom 13541 - 13600 5.0 15 9 Tu 1 . + CDS 13628 - 15004 726 ## COG0513 Superfamily II DNA and RNA helicases - Term 14827 - 14861 -0.2 16 10 Op 1 . - CDS 15001 - 15867 375 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 17 10 Op 2 . - CDS 15926 - 17026 772 ## COG3264 Small-conductance mechanosensitive channel - Prom 17054 - 17113 6.0 - Term 17061 - 17091 1.1 18 11 Op 1 1/0.250 - CDS 17120 - 18388 1424 ## COG0521 Molybdopterin biosynthesis enzymes 19 11 Op 2 . - CDS 18378 - 18983 653 ## COG3028 Uncharacterized protein conserved in bacteria + Prom 18903 - 18962 3.5 20 12 Tu 1 . + CDS 19006 - 20361 950 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs + Prom 20378 - 20437 3.7 21 13 Op 1 1/0.250 + CDS 20469 - 21146 917 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 22 13 Op 2 . + CDS 21242 - 21496 409 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 21522 - 21553 4.8 - Term 21502 - 21547 15.1 23 14 Tu 1 . - CDS 21590 - 23026 1812 ## COG0165 Argininosuccinate lyase - Prom 23050 - 23109 4.8 + Prom 23135 - 23194 2.2 24 15 Op 1 23/0.000 + CDS 23225 - 24157 1240 ## COG0181 Porphobilinogen deaminase 25 15 Op 2 . + CDS 24175 - 24906 441 ## COG1587 Uroporphyrinogen-III synthase 26 15 Op 3 . + CDS 24966 - 25499 799 ## COG0221 Inorganic pyrophosphatase + Term 25525 - 25563 5.1 + Prom 25549 - 25608 3.6 27 16 Op 1 1/0.250 + CDS 25648 - 27270 1538 ## COG0171 NAD synthase 28 16 Op 2 . + CDS 27305 - 27643 452 ## COG0347 Nitrogen regulatory protein PII + Term 27654 - 27690 5.2 - Term 27642 - 27677 5.8 29 17 Op 1 1/0.250 - CDS 27696 - 28343 542 ## COG2840 Uncharacterized protein conserved in bacteria 30 17 Op 2 . - CDS 28349 - 29314 687 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 29344 - 29403 4.5 + Prom 29281 - 29340 3.3 31 18 Tu 1 . + CDS 29404 - 31953 1874 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 31966 - 32010 10.8 - Term 31944 - 32004 8.1 32 19 Op 1 . - CDS 32015 - 32689 852 ## COG0461 Orotate phosphoribosyltransferase 33 19 Op 2 . - CDS 32701 - 33723 940 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases - Prom 33889 - 33948 2.4 + Prom 33931 - 33990 4.6 34 20 Tu 1 . + CDS 34027 - 34644 442 ## COG2834 Outer membrane lipoprotein-sorting protein + Term 34690 - 34731 -0.9 + Prom 34815 - 34874 4.8 35 21 Tu 1 . + CDS 34983 - 35819 488 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Term 35711 - 35748 2.0 36 22 Op 1 4/0.083 - CDS 35785 - 36996 875 ## COG0303 Molybdopterin biosynthesis enzyme 37 22 Op 2 . - CDS 36986 - 37609 352 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 37698 - 37757 3.4 + Prom 37706 - 37765 1.9 38 23 Tu 1 . + CDS 37839 - 39146 796 ## gi|302859743|gb|EFL82822.1| conserved hypothetical protein Predicted protein(s) >gi|301349803|gb|ADCQ01000047.1| GENE 1 27 - 221 188 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858734|gb|EFL81831.1| ## NR: gi|302858734|gb|EFL81831.1| transposase, IS4 family [Burkholderiales bacterium 1_1_47] # 1 64 311 374 374 134 100.0 1e-30 MVYDGDCRVLDSLNNVMQTKFCGGYYFGEIAGKRRKLFEALGVPVPDAEPEKEQDYDDEE ETEF >gi|301349803|gb|ADCQ01000047.1| GENE 2 353 - 520 239 55 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|217969673|ref|YP_002354907.1| ribosomal protein L33 [Thauera sp. MZ1T] # 1 55 1 55 55 96 83 2e-19 MAKGIREKIKLASTAGTGHFYTTTKNKRNSSGKMEMSKYDPVARKHVIYKETKLK >gi|301349803|gb|ADCQ01000047.1| GENE 3 533 - 766 365 77 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|74318607|ref|YP_316347.1| 50S ribosomal protein L28 [Thiobacillus denitrificans ATCC 25259] # 1 76 1 76 78 145 90 5e-34 MARVCQVTGKAPMVGNRVSHANNKTKRRFMPNLQYRRFWVESENRWVRLRVTNAALRTID KNGIEAVLADLRARGEI >gi|301349803|gb|ADCQ01000047.1| GENE 4 1090 - 2046 458 318 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229229955|ref|ZP_04354520.1| SSU ribosomal protein S1P; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Desulfotomaculum acetoxidans DSM 771] # 1 295 1 285 676 181 32 8e-45 MKILLAQPRGFCAGVDRAIAIVERALAVHGAPIYVRHEIVHNKHVVNSLREKGSIFVNEI DEVPDGSVLVFSAHGVPKSVEEKARARDLTIYDATCPLVTKVHMEVTKMHKQGYRIIMIG HAGHPEVEGTVGQVDSEINVIEKPAQVWDLEVENPEKVAYVSQTTISYDDAKELIQELKK RFPLVAEPKKADICYATQNRQDAVKELARRVDLVLVVGSKSSSNSNRLREVAEGAGTKAY LLDDAGEINPDWFEGIERVGITAGASAPEILVDEIVEKLKTLGADEVGTMTGQQEDVKFP LPKGLWKKDLENARDNQK >gi|301349803|gb|ADCQ01000047.1| GENE 5 2024 - 2500 288 158 aa, chain + ## HITS:1 COG:RSc2543 KEGG:ns NR:ns ## COG: RSc2543 COG0350 # Protein_GI_number: 17547262 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Ralstonia solanacearum # 10 154 21 168 173 89 37.0 2e-18 MLVTIKSNQACLNAPFGSILLTFEGDELVRCELSEEAVEEDLGSFAEHKAVKALKSYLGG SVQALDNWKPSEDGTEFRCQVWKEIAKVKAGDTVTYGQIADNLNSSPRAVGSACGDNPLP IFVGCHRVVGKSNLGGFAHSADNLSIKCWLLKHEQQNM >gi|301349803|gb|ADCQ01000047.1| GENE 6 2510 - 3001 508 163 aa, chain + ## HITS:1 COG:RSc2545 KEGG:ns NR:ns ## COG: RSc2545 COG2606 # Protein_GI_number: 17547264 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 160 1 160 163 201 59.0 5e-52 MSKKEHVSATPATMWLKQHKVPFEDGIYEYVEHGGTAQAAACFGVDEHNVVKTLIMQDEH EKPLVILMHGDREVSTKNLARQTNRKHIEPCKPAIAEKNSGYQVGGTSPFGTKKNMPVYV EKTILGLPFIYINGGRRGYNVKIDPKVLKDQLGAVEVGCAIEK >gi|301349803|gb|ADCQ01000047.1| GENE 7 3117 - 4151 715 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 2 330 479 805 832 280 46 1e-74 MLILGIESSCDETGVALYDTDKGLIADALHTQIEMHRLYGGVVPELASRDHIRRIIPLLN EVMKKAGKTPQDLDAVAVTEGPGLAGALLVGNSVAYGIGLALNISVVGIHHLEGHLLSSL LAEDKPSFPFVALLVSGGHTQIMEVRALGDYELLGETLDDAAGEAFDKTAQALGYSYPGG PAVSALAEKGTPGAIELPRPLIHAPNLDFSFSGLKTAVMNTVRKEPKPLSQEFKNNLARA FVDSVTDVLVTKCLKALKKTGNKSLVAAGGVSANKQLRARLTEACRRRGVKVFFPPQNLC TDNGAMIAAAAGAHLAEIKDLRNKKQGGFSIKPRWSLEHPNDND >gi|301349803|gb|ADCQ01000047.1| GENE 8 4196 - 4885 599 229 aa, chain - ## HITS:1 COG:DRB0143 KEGG:ns NR:ns ## COG: DRB0143 COG1401 # Protein_GI_number: 10957435 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Deinococcus radiodurans # 6 198 9 196 969 85 28.0 1e-16 MDNDYSWTKFNPAAARKLCAYSNRREELLSWLYSALPEETNYLHGPNHKKLTDIDPFTVF GVMNRHISQEKKAEVAKSFKIFFKVDEPSPTDFHGVSPLNNENSMFFGFKDGKTKEDINN LWTLFLGLFGKNDQVAGLFNEMTRHQYGIKFNLTMGMYWVCPTKYFPLDGPSRKYLNARG VAVSEQVPTYDEFVKISEEVRQKLCGDSTADDAFAIVTRDIYYSTHKAQ >gi|301349803|gb|ADCQ01000047.1| GENE 9 5156 - 5368 326 70 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|171058469|ref|YP_001790818.1| ribosomal protein S21 [Leptothrix cholodnii SP-6] # 1 70 1 70 70 130 91 2e-29 MPTIRVKENEPFEVALRRFKRTIEKSGLLTELRAREFYEKPTAERKRKKAAAIKRHYKRL RSMMLPKKLY >gi|301349803|gb|ADCQ01000047.1| GENE 10 5399 - 5845 239 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 146 1 146 147 96 33 2e-19 MSLRDQITSDMRDAMRAHDKEKLSALRMLLSSIKQKEVDEQITADDAVIQQIIAKLIKQR KDSVEQYLAGNRKDLADKESAEIKTFEVYLPARLSDEEIQKIVDEVVTSAGLSGPAAMGK AMGMIKPKVAGKADMGRVSALLKARLAQ >gi|301349803|gb|ADCQ01000047.1| GENE 11 5954 - 7903 1353 649 aa, chain + ## HITS:1 COG:YPO0644 KEGG:ns NR:ns ## COG: YPO0644 COG0358 # Protein_GI_number: 16120969 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Yersinia pestis # 2 419 5 429 582 357 43.0 5e-98 MIAQSFIKELLDRADIYEVVNRRVPLQQKGASAWACCPFHNEKSPSFSVNRERGFYHCFG CGEHGNAISFLMKYENLPFVDAVEKLASEFSMQVRYEGGAPKPKSGKPRLSEIMQRAMEF YRDKFNSDKFSQDYLHNRGLTDETIERFGIGFSPDAWHNLDAVFTPDLKPLLLEAGLQRT GQSGNVYDFFRNRLMFPIRNIRGQVIAFSARTMIGEEPKYINTGDTPIFTKGSEVFGLYE ARKSIQDKKRVIVVEGQMDVIQLSQAGFGEACAPLGTAIRAEHIERLLKMTDHVIFSFDG DAAGRKAAKRAMDLSLPLLDDAQKVSFVFLPEGEDPDSLVKKSGAPAFEEMLKKALPLSS YLIEALSQGLDLAVLEDRNAFIEEASPLVRKTKSPLLRDGLIERLSTAVGYKNSDELRKY FGFPVLPPAAPQRPSGFGNQRYSFGRGYDRYKTPRIPTSTGRSIPPTADAPLMALLRNFL RFPQLALEFEGMLAEQLSESNSPVSELLFKVIERVTHEDESGHTLAQFLADLPGPADENF EKEMDSARSMISTFLLEEGIDSVIRKGLSQGQILQTPLEAARLECRRILLQMELNRVEVQ RRALSTKGNLDDADRKVFRDLMQLDQDLQKEIKSIDAGINDILLRKREK >gi|301349803|gb|ADCQ01000047.1| GENE 12 7906 - 9219 1066 437 aa, chain + ## HITS:1 COG:FN0978 KEGG:ns NR:ns ## COG: FN0978 COG1757 # Protein_GI_number: 19704313 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Fusobacterium nucleatum # 1 425 1 424 431 280 40.0 6e-75 MLEVLTVGSFCASLFYCLFTGTSILYALIFAFFLFCGYALYRGFSLQEIGKACRQSIAKI SNIIIVMLLIGALTASWRASGTIAYLVSYASEIISPSWSLLGTFILNAALSSLIGTSFGT AATMGVVTMSLCVAMGVSPFWAGGAALAGAYVGDRCSPVSTSAQLVCAVTGTELYKNIKN MLRTGLIPFLLACLIYFFVGNGQGAQAADIDLTKLFSQEYILSAWTLIPAIVLLTMVMLK ADIKLTMIASIASAFVTALFLRDLGSIELCKILFSGYQAASPEVGRLMNGGGVLSMIQVC CIISISCTFAGIFELTGMLRRLESGIAYLGAKAGVFLTITLTALATAALSCNQMLAVILT EQLCNKIQPDKIKMAASLENTAIVIAPLIPWSIAGAVPVATIGAPQSCVIAAVFLWMLPV WGILVEKVLRKTYPTFS >gi|301349803|gb|ADCQ01000047.1| GENE 13 9571 - 12015 2681 814 aa, chain + ## HITS:1 COG:RSc2215 KEGG:ns NR:ns ## COG: RSc2215 COG0568 # Protein_GI_number: 17546934 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Ralstonia solanacearum # 75 810 5 754 755 706 58.0 0 MATAKKTTKKTTTNAGADTTEKVGAAETTTATKTAAKKTAAKTTATKATAAKRTRTQKAA AEETVAEVTAEPVKKTTRKTSAAKATPSKAAEETPVKKTTRKTAAKSAAADETAGEAVAA KAPAKKTAAKKTTAKAKPEAKRGRPGRKAKVETTEDDLVGDSDDDSIDEEVAIAESYVPP ASVRGKGKARDKAMKEALNRSYAHHEEDDKETRLNKLKALIRMGKERGYLTYSEVNDHMP ENIVDPDQIDQIISTLADLGIQVYEQAPTADDLLIGDSVPTASDDAAEEEAEAALATVDS EFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVHAISGCPTTIVAILEDAE KVRNGTMQIDQIVDGLVDGLDEEASEQVAEDDESTDIGASGMTAGQIDELKTVVLAKLDH CKELYQDLKHAYEAEGYRSPAFIKAQDAIQEELLSLRFTANTVERLCTMLKTQVEEVRKY ESRIYDIVVNRAKMPRELFLKEFLDNETNLAWSQAIAESDKPYAIDVKRKLPEIQHLQQQ LQNIQNAVTLPLKDLKDVYNQMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLD LIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKM NRISRQILQETGVEPDPAELAEKMDMPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFL EDFGTVAPAEAAQQSSLTEITKEVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGRQFDVT RERIRQIEAKALRKLRHPSRSDKLKSFMEGGSNN >gi|301349803|gb|ADCQ01000047.1| GENE 14 12945 - 13127 102 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAHDGLESSPQAGMNRLIDVENPTAMRVPCASEGGPMDWVIDHLDVKEFPTSGDGPWIQQ >gi|301349803|gb|ADCQ01000047.1| GENE 15 13628 - 15004 726 458 aa, chain + ## HITS:1 COG:RSc2211 KEGG:ns NR:ns ## COG: RSc2211 COG0513 # Protein_GI_number: 17546930 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Ralstonia solanacearum # 7 457 17 494 495 449 53.0 1e-126 MAECQNFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFG LPVLQKLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVD IKPQAEALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRIL NALPKKRQNLMFSATFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTD ALVELLKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLL KDFKDGTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALML VTDKDKKSFDAIRKLTRVNLIPQELDPEPRKRARFPRKFSSSTDAWKAPRKPEDPFFSRP YVPGRSSGKKPAPQNFSRSVSGEKREVAVLLGGTGRRN >gi|301349803|gb|ADCQ01000047.1| GENE 16 15001 - 15867 375 288 aa, chain - ## HITS:1 COG:RSc2210 KEGG:ns NR:ns ## COG: RSc2210 COG0008 # Protein_GI_number: 17546929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Ralstonia solanacearum # 4 284 20 308 315 246 48.0 4e-65 MSHYIGRFAPSPTGHLHAGSLACLLASYLDAKAHRGTWIIRVEDIDPPREPAWAAEDQLE TIEAFKLHSDRPILRQSTRIEAYQQALNFLIGKGLAYGCACTRKRIEAACLAAGLPQGAY PGTCRHGTGGAPIRAWRFLVDDGFISFNDRWQGTFKQNVLREIGDFVIRRADGLWAYQLA VVVDDGFQGVTHVVRGADLIDNTPRQILLQIALGLTTPGYMHIPLVLDKKGNKLSKQTLA PAIDRSKPEEEAARAWTHLGFKPFAFDTLDEFYSEAVKRWRTRFQIKA >gi|301349803|gb|ADCQ01000047.1| GENE 17 15926 - 17026 772 366 aa, chain - ## HITS:1 COG:AGc3014 KEGG:ns NR:ns ## COG: AGc3014 COG3264 # Protein_GI_number: 15888945 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 25 248 556 775 881 113 36.0 5e-25 MESFWDKLLSGSEAILEPLHVPLFTAGGSQIDTFDILEFCLVFLIAYWLGKLGEESIRKF GSRHNSVRPESLSMFARFIHWGILAVGILMGLSMIGLPITHLAILVSALSVGIGFGLQTI VNNSVAGLILISERAVSLGDIIATPSGQVGRVTMITIRATRIVTPTGQAIIIPNASLING SFTNYTMDRRGVRKIYPFSIPYGIDFRKVKEIIEKAAVSVPFCIKPDALHEVECGITGFG NFGINVELVVWVDPIELMEPYRLEAAFLNAINDACVANGIVMPGPSYGVTVSPTPTPVAF NAQVSGTSSPVPSNLRAPAPTNLVPSADPSESAKAIGQVPPAQAAAIIGVPQSMTENPSP KKEKEE >gi|301349803|gb|ADCQ01000047.1| GENE 18 17120 - 18388 1424 422 aa, chain - ## HITS:1 COG:STM0008 KEGG:ns NR:ns ## COG: STM0008 COG0521 # Protein_GI_number: 16763398 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Salmonella typhimurium LT2 # 7 198 5 196 196 251 66.0 2e-66 MKNSKAKIGLVSISDRASSGTYQDKGIPSLKEWLAKALLSDYEVVEKLIPDEQQLIEATL KELCDQENCDLILTTGGTGPSRRDVTPEATLAVATRTLPGFGEQMRAVSLAFVPTAILSR QVGVLREIKDHAALIINLPGQPKAIAETLEGIPSKGIHGIFAAVPYCIDLIGGPAIETRP NVVKAFRPKSAPQPHVIDAKIIEPKEGKADSTIIMLHGLGSDGSDFEHFREELAACGAPV EQARLILPTAPERAIAANKGFLMRGWFDLLDTDGIGASDEPALIESARIAERLIALEETK GIRRDRIFLGGFSQGGCVALYTALKLDRPIGGIFCLSGYLPIESADDIEHVGQGILSPIF LAYGKEDSDVPPVYPEISVRELRKLGATDLWSKGYDGAGHDLSIEEVTDLSDFLEKSLVA SQ >gi|301349803|gb|ADCQ01000047.1| GENE 19 18378 - 18983 653 201 aa, chain - ## HITS:1 COG:RSc0944 KEGG:ns NR:ns ## COG: RSc0944 COG3028 # Protein_GI_number: 17545663 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 34 181 34 184 208 122 49.0 4e-28 MEIMIALDANITKEGHANMKNTNENLEEEYSGPSKSELKRRAEHLQDLGKELITLGAETL AKIELPEVILKAIEDYHRVPSFGAKRRQLQLIGKYMRALDGDAVRQAIDRATGNDKAAVA ALHKSERLRDALIADDAALTKFIAQFPDVNVQEVRQLIRNARKEAEGNKPPKSARALYKL IYAMVLPPIVLEATEEKNDEE >gi|301349803|gb|ADCQ01000047.1| GENE 20 19006 - 20361 950 451 aa, chain + ## HITS:1 COG:RSc0945 KEGG:ns NR:ns ## COG: RSc0945 COG0312 # Protein_GI_number: 17545664 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Ralstonia solanacearum # 11 449 18 456 457 392 50.0 1e-109 MSQTPTISSSEELGSLVSHALDTALSLGATSASVEVSEEKGTCVTVRNRETESIEHTHDR DFGITVYLGKSKAVASSGDFRKESILRTVKAALDMARYTTPDECNGLPDKERLCTNPRQL DLFHPWNISIEEQVQKAVEAEKAALSVDKRVVNSDGAMVTTTIGSFILGNTEGFLHGYPF SDHSIDTSVIAEDQNGMQVGSWHTSGVSSMDLLSPQQVGMIAGQRAVDHLSARGLSTRKC PVVFEAPVAKSLFRTFVHAASGSALYRKTSFLEGMLNKPIFPDHLSILENPFIPRYWGSA PFDDEGVRPSERLVVDHGVLSGLFLSSYSARKLGMTTTGNAGGPYNLIFSEAPEASEKTL SALLSRMGTGLLVTELIGQGVNYTTGDFSKGASGFWVENGRIAYPVEGITVAGNLRDIFM SIEAMSDDVDLNGCYLSGSVLIKEMTVAGNS >gi|301349803|gb|ADCQ01000047.1| GENE 21 20469 - 21146 917 225 aa, chain + ## HITS:1 COG:CAC1479 KEGG:ns NR:ns ## COG: CAC1479 COG0115 # Protein_GI_number: 15894758 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Clostridium acetobutylicum # 1 224 1 224 341 323 65.0 1e-88 MQKKDIDWSKLGFGYTPTDYRFEAHWKDGKWDEGKMITDSNIELSEAACVFHYAQCCFEG LKAYTTVNGDIVTFRPDLNAERMMGSAERLEMPAFPKEKFIQAVKDVVAANAAWVPPYGT GATLYIRPVMIGSGPQIGVAPAHEFIFRIFVMPVGAYFKGAIKPLKLTVPEFDRAAPRGT GHIKAGLNYAMSLHPTMEAHRHGYAENIYLDPATRTYIEETGGAT >gi|301349803|gb|ADCQ01000047.1| GENE 22 21242 - 21496 409 84 aa, chain + ## HITS:1 COG:CAC1479 KEGG:ns NR:ns ## COG: CAC1479 COG0115 # Protein_GI_number: 15894758 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Clostridium acetobutylicum # 1 78 260 337 341 96 57.0 9e-21 MGYKVVERPVKLNELKDMAEGALCGTAAVLAPIGMVNTPDGDIYFPSGMEKMGPICTKLR ETLTGIQMGEIEGPEGWVVKIDAE >gi|301349803|gb|ADCQ01000047.1| GENE 23 21590 - 23026 1812 478 aa, chain - ## HITS:1 COG:RSc2363 KEGG:ns NR:ns ## COG: RSc2363 COG0165 # Protein_GI_number: 17547082 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Ralstonia solanacearum # 14 461 5 458 471 615 68.0 1e-176 MAQHNPLSVHADPLASKKEAWSGRFSEPMAEFVLRYTASVNFDKRMAEADIAGSVAHAKM LAKCGIISKEDLNDIERGMRQILQEIKENRFEWKLELEDVHLNIEARLTELVGDAGKRLH TGRSRNDQVALDIRLYLRNEIDQIMDLLSHLQKSLLTVAEKNIDTIMPGYTHMQVAQPVT LGHHCLAYAEMFERDRERLADCRKRVNRSPLGAAALAGTTYPIDREYTAELLGFEGVTQN SLDSVSDRDFAIEFCSCASLIMIHISRMSEELIYWMNTNFAYIMLPDRFTTGSSIMPQKK NPDVPEAARGKSGRVVGHLMGLLMLMKGQPLAYNKDNQEDKEPLFDTIDTVKDTLRAFIE MIPGIQVNKARMREAVMLGYPTATDFADYLVRKGLPFRDAHEAVGCAVRLASEKGCGLHD LTLEELREFSDKVGEDVYDSLTLEGSIASRNHTGGTAPSQVAKQVGIWKERLKNRAHK >gi|301349803|gb|ADCQ01000047.1| GENE 24 23225 - 24157 1240 310 aa, chain + ## HITS:1 COG:NMA0718 KEGG:ns NR:ns ## COG: NMA0718 COG0181 # Protein_GI_number: 15793695 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Neisseria meningitidis Z2491 # 7 308 6 307 311 309 55.0 4e-84 MTQQDHLVIATRESPLALWQAKYVQSCLKEKFPELDVQLLGLTTKGDKILDVTLSKIGGK GLFVKELEAAMLEGKAQIAVHSLKDVPMDLLEPFTLAAVMVREDPRDAVVSHKYASLEEM PAGSVVGTSSLRRELMVRSRFPHLKVEMIRGNVGTRLSKLDNGQYDTLVMAVAGLKRLGL SDRIRSIIPPEVSLPAPGQGAIGIEAVGNDEMTQKYVEALNDEDTRLCTQAERAVSRALG GSCQVPLAAYATIDDGQMFLRALVGNHMTGEYVTAEYTGLANEPEENARKVLDQLIEKGA KRLLKEVLGK >gi|301349803|gb|ADCQ01000047.1| GENE 25 24175 - 24906 441 243 aa, chain + ## HITS:1 COG:NMA0988 KEGG:ns NR:ns ## COG: NMA0988 COG1587 # Protein_GI_number: 15793945 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Neisseria meningitidis Z2491 # 109 243 104 237 246 60 33.0 3e-09 MKPGPGGQRLQEELEAKTAGSVYWPAFTFDRSEDYEESVKEILEGAERGALLILVSPTTV SFMKDIFPQLPESARFACVGEPTAKALTAAFPAAHEILFPHGSSLESGSELLFELLLEEG LPPEVVLIRGDTGRQFLIDVLRDKGVPVTVAPIYKRIPLKASGDQKRWIGRGEAPVVYLT STDAIRTLEENVGGDNAGWLKSALVLTIHPRIQEHLFEEGFKNVELVESRCSGLADKLIS LAE >gi|301349803|gb|ADCQ01000047.1| GENE 26 24966 - 25499 799 177 aa, chain + ## HITS:1 COG:RSc2349 KEGG:ns NR:ns ## COG: RSc2349 COG0221 # Protein_GI_number: 17547068 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Ralstonia solanacearum # 1 173 1 173 175 234 64.0 5e-62 MDMSKISAGKDLPHDFNVVIEIPAQSDPVKYEVDKESGALLVDRFIGTSMRYPANYGFIP QTLGDDGDPVDVCVITPFPLLAGSVIRCRPLGMLLMEDESGGDMKMLAVPVQKLTPRYNK IQTIDDVPEDYLAQIRHFFEHYKDLEKGKWAKVSGWTGPEEACKVIMKGVEAYNNAK >gi|301349803|gb|ADCQ01000047.1| GENE 27 25648 - 27270 1538 540 aa, chain + ## HITS:1 COG:RSc2347_2 KEGG:ns NR:ns ## COG: RSc2347_2 COG0171 # Protein_GI_number: 17547066 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Ralstonia solanacearum # 261 539 17 292 293 342 60.0 1e-93 MIEKVVVSMAQLNQTAGDLEGNFKRIAEAAEKAKHSDILVTPELSLCGYPPEDLLFLDSF LEDCAKKLNELVEYSTRFPKLHILAGYPLKEAGRLYNVVSVILNGKILLTYRKKNLPNYG VFDEERYFTPGGEDVCTFDVGDTRFGVNICEDIWFPEAPSQAKEQGAQVLLIANASPFEE GKEEQRLNMVRRHVNAIGMDACYVNMCGAQDEIVFDGETFACSADEVLARAPHMKESLLS VEVRKGRICRGEDSQPLSDWAVLYEALVVSMRDYINKNGFKGVVLGLSGGVDSALVLKIA VDAVGNDKVLAVMMPSVYTSSLSRGDAAKLASRLGVRLETISIQDGYTAFEFMLAKQFNG MPHDVTEENLQARIRGVILMAISNKFGSMVATTGNKSEMAVGYSTLYGDLAGGFAVIKDV YKTQVYALCRWINECSKENPVFPETILTRAPSAELRENQKDQDSLPDYSVLDEILRRFIE DREGPEEIVAAGFDRAVVDKVLRMVSRAEYKRRQSPIGPKVTKVAFGRDWRFPVTNKYRL >gi|301349803|gb|ADCQ01000047.1| GENE 28 27305 - 27643 452 112 aa, chain + ## HITS:1 COG:RSc0342 KEGG:ns NR:ns ## COG: RSc0342 COG0347 # Protein_GI_number: 17545061 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Ralstonia solanacearum # 1 112 1 112 112 153 75.0 7e-38 MKQVVAIIKPFKLDEVREALAEIGVQGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKMK IECVVDDSLVNMAVEAIMKTARTNKIGDGKIFVMPVEEVIRIRTGETGNAAV >gi|301349803|gb|ADCQ01000047.1| GENE 29 27696 - 28343 542 215 aa, chain - ## HITS:1 COG:RSc2343 KEGG:ns NR:ns ## COG: RSc2343 COG2840 # Protein_GI_number: 17547062 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 8 213 13 215 221 131 42.0 9e-31 MNVDKESFASLMGLKEQLKVKQEEEARIAAEKEQKRKEAEAKAHEFENAMKELGVKKKIG REDKVFHAMPKPAPIPRQRYADEKAVLEDSLSDNISIDHLLDSDERLSYRAPSMAPDVPK KLHQGAWSVKGTLDLHGYTSEEARLLLVEFLNEERKAGHRAVRIIHGQGFGSAGRKPVLK EKVPVWLAQRKEVLAFVQAPPYDGGAGAVYVLLAP >gi|301349803|gb|ADCQ01000047.1| GENE 30 28349 - 29314 687 321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 11 315 5 304 306 269 48 2e-71 MTTNTEHSKVLIIGSGPAGYTAAVYAARANLKPTLITGMEQGGQLTTTTEVDNWPGDPKG VMGPELMQRMLEHAERFETRIVFDEISEAHLNEKPIRLVGNNGNYTCDALIIATGASAKY LGLPSEEEFKGKGVSACATCDGFFYRNQEVAIVGGGDSAIKEAIYLAGIASKVHMIHRRD QYRAEKIMIDRLKAVAAEGKIVLHEFCTLDEILGDKTGVTGVRLNNLKTGEKEDIPVMGV FIAIGHSPNTKMFEDQLEMNHGYIVTKGIASGAAQATNLPGVFAAGDCQDQVYRQAITSA ASGCMAALDALNYLETNGLVD >gi|301349803|gb|ADCQ01000047.1| GENE 31 29404 - 31953 1874 849 aa, chain + ## HITS:1 COG:XF1450 KEGG:ns NR:ns ## COG: XF1450 COG1674 # Protein_GI_number: 15838051 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Xylella fastidiosa 9a5c # 326 841 230 779 784 481 46.0 1e-135 MSNSIETSFLYRNFPRFRNNSEDEVGAGGKLWGLVLFCVCAAACIALSLVLGSYDYSDPG FSRFNTKLQVSNLFGVQGAWTADLFYLLFGWGAWVFVIGLFYFLVRGLKRLRGKKVSVSP IPMGFRILAFCVLVLSCCALFFLRFHTHSEGLPGTTGGALGSAIGSELLYWMSLEAATAF VLVLVLFCSSVFFGFSWMSVAEQIGRTFERLFRRVASIKQSKEDDAFAKASMEEREKSLQ DRQGPSPELPALPAASAPVVQPRAEEIKTEELLFADDKEDEVKGPDQFKPIDYERDPEDL APASLRPTPENTVAPMEKEPFDIEDIRDEEESVKDLPIEDHVVEQPARLIEEVPEEPKEF VLPPVSLLNDPPFEAVQVSREELNLTSQRIEHILQNYKINAKVLSALPGPIITRFKLQPA PGVRSRKFVEVAKDLARGLGQPNVRIVENMQEADCIGLEVPNSSQSVQTIYLKEIINSHP FQSSTSPLTLALGKGVAGDPVVIDLAKAPHLLVAGTTGSGKSVGINAMILSMLYKNPPDK LKLILVDPKEVEFSPYEDIPHLLTPVITDMAKAAHCLAWAVREMDRRYKLLKMAGQKNFD GYNQRIREAKEAGTPIMNPHAQPPIPLEEIPYIIIIIDELADLLMVYGKEVETQIMRLTQ KARAAGMHMIIATQRPSADIVTPVIKANCPSRISFQVSNRYDSTTILNTPGAEELLGRGD MFYMKPSAQLQRIHGAFVPDEEIYRVTEFLKEQGKPEYVDGVTDAPEEEEEEVEETSSAR NEGNELYDKAVQLVTTENRPSISYLQRRLNIGYNRAANLIEKMEQEGVVSKPNSMGKRRV LVGSGPSMD >gi|301349803|gb|ADCQ01000047.1| GENE 32 32015 - 32689 852 224 aa, chain - ## HITS:1 COG:SMc02165 KEGG:ns NR:ns ## COG: SMc02165 COG0461 # Protein_GI_number: 15964234 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Sinorhizobium meliloti # 6 216 11 224 232 119 32.0 3e-27 MPTSFIAQDIMAEHLLSHNAIVFLKDKPMRLRSGLVTPIYVDNRILPSYPEAWRDIVETM ASRIVELKLDFDVIAGVEGAGTSHGAALAYRLGVPFVTVRRATKSYGNLSRIDGIDVKGK KVLIIEDHLSTGLSLLDAAKVLREAGAIVEACFAITNFDMPETMRNFEKHHITAYQLLPF AFIVEKAEKLGLIDANEKEQIDAWLDTPWTWAAERGLFAQASEN >gi|301349803|gb|ADCQ01000047.1| GENE 33 32701 - 33723 940 340 aa, chain - ## HITS:1 COG:PM1882 KEGG:ns NR:ns ## COG: PM1882 COG0402 # Protein_GI_number: 15603747 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Pasteurella multocida # 8 328 7 327 329 430 62.0 1e-120 MNLETPLTIRSMIEPVIKRNGGWVNTHAHADRSFTLSPDVLHMRKTCTLQQKWDALDKLK SESTEEDFYRRFCQFFELMISQGVTAVGTFVDIDPQSRDRAIKAGVRAREHYADQLAVKF ANQTLKGVIDPEARQWFDIGSEMVDIIGALPKRDEKDYGKGSEAFDIILSTAKRLNKMVH VHVDQFNESLEYETEELCAKTIEHGMQGKVVAIHGISIAAHSRMYRRRLYDLMKKADVMM IACPTAWIDTPRSESIGPVHNSMTPVDELDPAGITVALGTDNVCDAMVPWNGGDMWHELM TLATGCRYDEMEALAKIATVNGRRVLGLPPLENTDFSIQI >gi|301349803|gb|ADCQ01000047.1| GENE 34 34027 - 34644 442 205 aa, chain + ## HITS:1 COG:RSc2340 KEGG:ns NR:ns ## COG: RSc2340 COG2834 # Protein_GI_number: 17547059 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Ralstonia solanacearum # 22 203 29 214 215 140 39.0 2e-33 MKKTALLTITGLFPFVVFSQPLDLLNNFLNETKQASGAFEQQTFQKDGKPAEELQKGTFS FSRPGKFVWTYTSPYPQKMVCDGSRIYIWDEDLNQVTVRSAKGAIPKSPASILFGTQSYK KDWNATQPKQEDGYTWITLTPKAKDASVNSVSFGFKSEKLEKLIFVGSMGEKTNLTISDL KTDVQLSPETFKFTAPKGADVIEVK >gi|301349803|gb|ADCQ01000047.1| GENE 35 34983 - 35819 488 278 aa, chain + ## HITS:1 COG:HI0762 KEGG:ns NR:ns ## COG: HI0762 COG0639 # Protein_GI_number: 16272703 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Haemophilus influenzae # 4 229 2 225 226 202 44.0 4e-52 MSKVFLCGDPHGEFDHILSAIDQWHPDAVLILGDLTPSHSLDEIFKGVKGTKIYWIPGNH DTDSDLIYDRLWRSSFAKHNLHGRVQDVCGVKVAGLGGVFRGQIWMPPAMPLYASPSLFI RKIGKSGMWRGGLPRRHRSTIFQSVYEKLKECKADILITHEAPSMHPKGFKALDDLAVKM GCKIIFHAHQHESKRYCPCNGLCARGIGLRGIIDLEGNVIVPAQVDPRELEAKVRSAPSP VKTQLRRTPASKFRRLNRFNRFSRKGWSNRLPKKERQG >gi|301349803|gb|ADCQ01000047.1| GENE 36 35785 - 36996 875 403 aa, chain - ## HITS:1 COG:PM0694 KEGG:ns NR:ns ## COG: PM0694 COG0303 # Protein_GI_number: 15602559 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Pasteurella multocida # 4 399 6 401 406 311 42.0 2e-84 MEVKTYTQTLEFLRSYIEPVASTAEKTISEALGFVLAEDLHSPIDLPLFNNSAMDGWAFG SEDIKPEGFTLKEVGSSFAGHPYPKKLQSGECVRIMTGGEVPEGADTVVKQEIVKADDKE ITFPSEVRADDNVRRKGEEIRSGDVCMTKGTLLHAPEINFLAALGIHKVTVFKKVKVGFF STGDELQSIDQPLAPGKIYDSNRYCIGAMLREKGFDIIDYGVIKDNPETLKECLLRASQE CDAVITSGGVSVGEADFTRKVVLEIGELISWHCLIKPGKPLAVGKIGKAYFFGLPGNPTA TQVTFYAIVSIALALLSGQKDPKLVYALAAAKGKFKKNVGYTDFQRGLLTMEDGRVTVTP AGSQKTGALKSMIKANCFIYLADNQAAPADGELIPVVPFWGAC >gi|301349803|gb|ADCQ01000047.1| GENE 37 36986 - 37609 352 207 aa, chain - ## HITS:1 COG:HI0844 KEGG:ns NR:ns ## COG: HI0844 COG0746 # Protein_GI_number: 16272785 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Haemophilus influenzae # 9 193 5 188 192 135 36.0 6e-32 MSNETKNEISGILLAGGKARRMGGVNKGAQLLGGRTLAGLVIERMKPQVKSIFISSNEFA AEFDSYGYPVFKDVRQDYPGPLAGIETILKQDLGGPWYFVSPTDTPFLPRNLAGLLHKTA KEKQALCVFPTHKGKKEPLHCLLHKDVLPSLTSFLDSNKRSVLGFLEHLGALELECEIDE GDFMNLNTLEELELLNKTLEQELSDGS >gi|301349803|gb|ADCQ01000047.1| GENE 38 37839 - 39146 796 435 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859743|gb|EFL82822.1| ## NR: gi|302859743|gb|EFL82822.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 435 12 446 446 828 100.0 0 MSELKYIASKNGLKYKIVRFEAGSEGKRAKINQKAATVDFTVYPAKFEPNLKLTNEEIEE ISVFTKTMETELEAAEVKEFILRYREGLRVEIISKATGGCPEIIADLVDSLKRALVPKET LEASPDHLCFLVEGETEGNYISAYARRLGVLNKISIIKPSGNSPAEMVKEAARILALDEL KGTTLRDVWCVFDRDRHPSYREAFELASRNRRIRLCWSNPCIELWFLMHFLKLPCGLTAS VRFPGPTQTQLLKVSESMEKEIIEQVYYKLFDPEESLEALMKQWPSYKKNGLGYVEELHS KLSFAMVQYQNSDKDPDQIGSCFPELLKALADIAGKTLEDASEVSAVLNIDNTELLAIEE KIAAAQNKVEQARAGYLLAKSKRASQNNNKNRVYEENQAKFLKNAEGRLSYLLELKEKLS SKTTQEEPPSRDNND Prediction of potential genes in microbial genomes Time: Fri May 13 06:37:59 2011 Seq name: gi|301349802|gb|ADCQ01000048.1| Burkholderiales bacterium 1_1_47 cont1.48, whole genome shotgun sequence Length of sequence - 710 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 1 - 400 319 ## COG1430 Uncharacterized conserved protein - Term 404 - 441 3.3 2 1 Op 2 . - CDS 464 - 667 329 ## COG1278 Cold shock proteins Predicted protein(s) >gi|301349802|gb|ADCQ01000048.1| GENE 1 1 - 400 319 133 aa, chain - ## HITS:1 COG:RSc2494 KEGG:ns NR:ns ## COG: RSc2494 COG1430 # Protein_GI_number: 17547213 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 28 133 34 139 150 117 51.0 4e-27 MTPNIRIALFSAAFVLLSSVQYACAADTLKLMVKGITVPVEVAADNANREKGLMFRKHLP ENSGMLFVMDRSDAVCMWMKNTLIPLSVAFIDKDGFIINIEEMKPLTLDIHCSKAKAFYA LEMNESWFEKNHV >gi|301349802|gb|ADCQ01000048.1| GENE 2 464 - 667 329 67 aa, chain - ## HITS:1 COG:RSp1053 KEGG:ns NR:ns ## COG: RSp1053 COG1278 # Protein_GI_number: 17549274 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Ralstonia solanacearum # 1 67 1 67 67 102 79.0 2e-22 MATGTVKWFNDAKGYGFITPDDGGEDLFAHFSAIKMDGFKTLKQGQRVTFDLKEGEKGKQ ADNIKPA Prediction of potential genes in microbial genomes Time: Fri May 13 06:38:38 2011 Seq name: gi|301349801|gb|ADCQ01000049.1| Burkholderiales bacterium 1_1_47 cont1.49, whole genome shotgun sequence Length of sequence - 74436 bp Number of predicted genes - 65, with homology - 64 Number of transcription units - 36, operones - 15 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 145 178 ## gi|302858921|gb|EFL82007.1| transposase, IS4 family protein - Prom 369 - 428 7.8 + Prom 379 - 438 8.8 2 2 Tu 1 . + CDS 549 - 2198 479 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Term 2219 - 2261 10.2 + Prom 2224 - 2283 2.6 3 3 Tu 1 . + CDS 2378 - 3604 1104 ## COG1906 Uncharacterized conserved protein + Prom 3612 - 3671 3.5 4 4 Op 1 . + CDS 3706 - 4776 550 ## gi|302859383|gb|EFL82464.1| hypothetical protein HMPREF0189_02227 5 4 Op 2 . + CDS 4773 - 6716 730 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits 6 4 Op 3 . + CDS 6729 - 7628 735 ## COG2962 Predicted permeases 7 4 Op 4 . + CDS 7625 - 8245 524 ## COG2095 Multiple antibiotic transporter + Term 8315 - 8351 -0.5 - Term 8301 - 8341 4.1 8 5 Op 1 . - CDS 8367 - 9995 2108 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 9 5 Op 2 23/0.000 - CDS 10008 - 11069 1220 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 10 5 Op 3 4/0.071 - CDS 11073 - 12329 1735 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 11 5 Op 4 . - CDS 12342 - 12914 768 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit 12 5 Op 5 . - CDS 12939 - 15074 2246 ## COG1042 Acyl-CoA synthetase (NDP forming) - Prom 15312 - 15371 5.7 + Prom 15594 - 15653 6.3 13 6 Tu 1 . + CDS 15675 - 15788 220 ## + Term 15833 - 15885 8.9 14 7 Tu 1 . - CDS 15845 - 17542 941 ## COG5421 Transposase - Prom 17562 - 17621 6.5 - Term 17678 - 17709 2.1 15 8 Op 1 . - CDS 17717 - 17980 159 ## gi|302859393|gb|EFL82474.1| fumarate reductase flavoprotein subunit 16 8 Op 2 . - CDS 17986 - 19170 1212 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - Prom 19208 - 19267 10.4 + Prom 19184 - 19243 12.0 17 9 Tu 1 . + CDS 19393 - 20472 618 ## COG1910 Periplasmic molybdate-binding protein/domain + TRNA 20547 - 20621 60.1 # Arg CCT 0 0 + Prom 20548 - 20607 78.5 18 10 Op 1 . + CDS 20790 - 21212 308 ## GM21_0359 transcriptional regulator, MarR family 19 10 Op 2 . + CDS 21276 - 21653 542 ## BF4112 hypothetical protein + Term 21676 - 21728 5.6 + Prom 21687 - 21746 2.3 20 11 Tu 1 . + CDS 21768 - 23024 1127 ## COG1301 Na+/H+-dicarboxylate symporters + Term 23071 - 23105 6.9 + Prom 23163 - 23222 4.1 21 12 Tu 1 . + CDS 23261 - 23926 455 ## gi|302859399|gb|EFL82480.1| hypothetical protein HMPREF0189_02243 + Prom 23965 - 24024 3.9 22 13 Op 1 24/0.000 + CDS 24059 - 26038 1821 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 23 13 Op 2 . + CDS 26052 - 28871 2569 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 28893 - 28932 10.1 + Prom 28921 - 28980 2.6 24 14 Tu 1 . + CDS 29006 - 29887 982 ## COG2321 Predicted metalloprotease - Term 29887 - 29928 7.1 25 15 Tu 1 . - CDS 29947 - 30159 390 ## COG3585 Molybdopterin-binding protein 26 16 Tu 1 . + CDS 30725 - 32890 2974 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 32915 - 32947 5.4 - Term 32946 - 32975 0.5 27 17 Tu 1 . - CDS 33001 - 34200 1384 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 34222 - 34281 4.3 + Prom 34169 - 34228 4.8 28 18 Tu 1 . + CDS 34448 - 36352 2253 ## COG0326 Molecular chaperone, HSP90 family + Term 36378 - 36423 12.1 + Prom 36383 - 36442 4.7 29 19 Tu 1 . + CDS 36470 - 37222 726 ## COG0421 Spermidine synthase + Term 37245 - 37288 6.1 - Term 37089 - 37125 3.4 30 20 Op 1 1/0.071 - CDS 37219 - 37902 175 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 31 20 Op 2 . - CDS 37871 - 38467 350 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 32 20 Op 3 . - CDS 38464 - 39246 749 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 33 20 Op 4 . - CDS 39249 - 39578 478 ## COG1146 Ferredoxin - Prom 39754 - 39813 4.1 + Prom 39571 - 39630 2.6 34 21 Tu 1 . + CDS 39799 - 40959 897 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 41020 - 41079 6.1 + Prom 40962 - 41021 5.8 35 22 Tu 1 . + CDS 41204 - 42622 1537 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases + Term 42645 - 42693 1.1 + Prom 42719 - 42778 1.7 36 23 Op 1 . + CDS 42813 - 43526 519 ## gi|302859414|gb|EFL82495.1| conserved hypothetical protein 37 23 Op 2 . + CDS 43523 - 44476 750 ## COG1230 Co/Zn/Cd efflux system component + Prom 44499 - 44558 6.0 38 24 Op 1 3/0.071 + CDS 44622 - 46265 2095 ## COG0504 CTP synthase (UTP-ammonia lyase) 39 24 Op 2 3/0.071 + CDS 46271 - 47125 865 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 40 24 Op 3 11/0.071 + CDS 47143 - 48429 1993 ## COG0148 Enolase 41 24 Op 4 . + CDS 48433 - 48738 312 ## COG2919 Septum formation initiator + Term 48758 - 48801 2.4 + Prom 48803 - 48862 3.0 42 25 Op 1 . + CDS 48911 - 49813 1036 ## COG0428 Predicted divalent heavy-metal cations transporter 43 25 Op 2 . + CDS 49894 - 50976 1267 ## COG0787 Alanine racemase 44 26 Tu 1 . - CDS 50969 - 51730 765 ## COG0730 Predicted permeases - Prom 51839 - 51898 2.2 + Prom 51847 - 51906 5.2 45 27 Op 1 40/0.000 + CDS 51941 - 53965 1276 ## COG0642 Signal transduction histidine kinase 46 27 Op 2 . + CDS 53962 - 54675 419 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 54700 - 54731 -1.0 + Prom 54678 - 54737 5.9 47 28 Op 1 . + CDS 54776 - 56305 1778 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 48 28 Op 2 . + CDS 56315 - 56722 468 ## gi|302859426|gb|EFL82507.1| fumarate reductase flavoprotein subunit + Term 56760 - 56800 2.2 - Term 56746 - 56788 5.2 49 29 Tu 1 . - CDS 56812 - 57762 1094 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 57898 - 57957 2.1 + Prom 57733 - 57792 9.2 50 30 Op 1 6/0.071 + CDS 57898 - 58743 674 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 51 30 Op 2 1/0.071 + CDS 58824 - 59447 745 ## COG0009 Putative translation factor (SUA5) 52 30 Op 3 . + CDS 59485 - 60138 830 ## COG1994 Zn-dependent proteases 53 30 Op 4 1/0.071 + CDS 60157 - 60747 489 ## COG0500 SAM-dependent methyltransferases + Term 60767 - 60804 7.3 + Prom 60752 - 60811 1.8 54 31 Tu 1 9/0.071 + CDS 60852 - 61733 1116 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Term 61755 - 61791 -0.2 + Prom 61741 - 61800 3.9 55 32 Op 1 . + CDS 61827 - 62999 1357 ## COG3317 Uncharacterized lipoprotein + Term 63020 - 63055 1.1 56 32 Op 2 . + CDS 63064 - 63540 445 ## COG3467 Predicted flavin-nucleotide-binding protein 57 32 Op 3 . + CDS 63620 - 64138 680 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 - Term 64146 - 64191 15.3 58 33 Tu 1 . - CDS 64211 - 66856 1972 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 66880 - 66939 4.8 - Term 66905 - 66951 6.1 59 34 Tu 1 . - CDS 66969 - 67898 1156 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 67954 - 68013 3.7 + Prom 67896 - 67955 3.3 60 35 Op 1 2/0.071 + CDS 67986 - 68783 573 ## COG0565 rRNA methylase 61 35 Op 2 . + CDS 68801 - 69499 718 ## COG1045 Serine acetyltransferase + Term 69580 - 69631 1.1 - Term 69516 - 69549 6.1 62 36 Op 1 . - CDS 69570 - 71402 1788 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 63 36 Op 2 . - CDS 71403 - 73250 1839 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 64 36 Op 3 . - CDS 73257 - 73556 246 ## COG3636 Predicted transcriptional regulator 65 36 Op 4 . - CDS 73562 - 74368 363 ## COG1403 Restriction endonuclease Predicted protein(s) >gi|301349801|gb|ADCQ01000049.1| GENE 1 1 - 145 178 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858921|gb|EFL82007.1| ## NR: gi|302858921|gb|EFL82007.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 48 1 48 584 108 100.0 1e-22 MGRPRVYDTPHFCLHTYVRKGHTYVEAYRNEWDPEKKRSRIAQRKYVG >gi|301349801|gb|ADCQ01000049.1| GENE 2 549 - 2198 479 549 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 77 532 38 482 508 189 31 5e-47 MAQAPEFKYAPMFQVGEDTTEYYHLTSEHVSLGNFEGKEILKVTPEALTMLIERAFTDVN FMLRRSHNECVAKILKDPESSDNDKYVALTMLRNAEVSAKGVLPICQDTGTAIIHGEKGQ RVWTDFSDEEAISRGVYNTYTKNALRYSQNAPLTLYKEVNTRCNLPAQIDIEATEGEEYR FLCVVKGGGSANKSYLFQKTKAILNPKALIPFLYEQIKGLGTAACPPYHIAVVIGGTSAE KTMLTVKLASTKFYDNLPTTGDETGRAFRDVELENKLLELANNIGLGAQFGGKYLAHDVR VIRLPRHGASCPIGIGVSCSADRNVKCKINREGLWVEKLDDNPAELIPEEFRHMKEGETV KIDLNQPMEKIRAELSKHPVSTRVSLTGKIIVARDIAHAKLQERLDKGEPLPQYIKDHPV LYAGPAKTPEGYACGSMGPTTANRMDPYADPFMAAGGSHVMIAKGNRTDVVTEACKKHGG FYLGTIGGVAADLSAESIRSIKCIEYPELGMEAVYEIDVVDFPAFILVDDKGNDFFKQLK PRFPVNFEA >gi|301349801|gb|ADCQ01000049.1| GENE 3 2378 - 3604 1104 408 aa, chain + ## HITS:1 COG:PAB2344 KEGG:ns NR:ns ## COG: PAB2344 COG1906 # Protein_GI_number: 14520231 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pyrococcus abyssi # 6 382 5 372 396 127 25.0 3e-29 MNSVFLVVIAAMILIVVLLRFKVLIGPAILSGGLLIWLFESRSFEKLWIAFTETLTMQRT WDLLLCLYFVMCLEVELRKSGSLHGMVVTLRNIFSSNKVTLAFMPAFLGLLPSLGGARFS APIVQEASEGIAVDDEQKSAINLWFRHIFEFSNPLMPGVILACGIANVSIGDLIDQVGWV TILCFVLGWIFLIIPLKITDLEKATNTQHDRTIDWKSLVLAFGPIVTSFLLIVAFNVQAA LAMGLVVVAFIPLYFWFKRPISVKSVFTESLDKKLFFNVVCILYFIQLLTVIGTLDEIVS VFNNSSLPQAVIIACLSFIFGVMTGMGQGYIAIVMPIVALMAPGNIVLVGIAMVYGMAGQ MVTPTHLCILVTVEYFKCRLWKTIGKCGVLSLLMVLIFSAWTYWRYYL >gi|301349801|gb|ADCQ01000049.1| GENE 4 3706 - 4776 550 356 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859383|gb|EFL82464.1| ## NR: gi|302859383|gb|EFL82464.1| hypothetical protein HMPREF0189_02227 [Burkholderiales bacterium 1_1_47] # 1 356 1 356 356 695 100.0 0 MKLDKDNLAKILSLWLHVEALTPFDLDKNDLIEQMPGSLNQPRSSLFTWDNEDTTQRDSL EIELQKLPKEEDRTDFFRMFTVCIGIVNRNEFIDRAEHLLRSNLLDISQDLSDFSAEEQR TDDLICLGVLRANHFGKISMGTVEPSYALCELVNLTNKQKGVESFEFLTDVAQILHTSAV RQLSLDSETTAQKISEKDRQFYGMLIHNLNKKELKPDETRGYKLIKDLNPPQNFLNPRKI DELCKSWLEKAGLGPSYRIWVIVNYYERPKPLYFDFMNSPYIEILEKIKKRVQTEPPTRV LSPVSERFFSLAYDNPDRNDLLANSKKFLEMARSSDAGRAISKIILFPANRLLFQP >gi|301349801|gb|ADCQ01000049.1| GENE 5 4773 - 6716 730 647 aa, chain + ## HITS:1 COG:SA0089 KEGG:ns NR:ns ## COG: SA0089 COG1112 # Protein_GI_number: 15925797 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Staphylococcus aureus N315 # 243 625 663 1046 1050 164 30.0 7e-40 MIWAPPVDPIISVNGPPGTGKTMLLKELLTEIVINRAAVLANIEDIGTAPLFELKSGWRG EQVPVLLKEYVEDYPIIVASNNNNAVENITKELPFDYGFEEPFDYFSDLANKLNRSKDAW GLVSAPLGKSDNWTRLWKAFFSNHKTPKGTIPYLQHALEEEIQSEGGIAEIRSNWKKETQ RFRELYCDVHERITSKMPDYKADVKKFAQTSEEKPVTARSFRDSVLRSFRSKKGESEDNP FDFSGSSKEKNHARRLYTDEELDRARTRLFISALKLHRLAVLAKKKDFIDGIRGSITANM YDLVSPHRLSFLGTLSFLIPIISTTFASAAFRFNNFLSSSLPWVIVDEASQATPQSALLL MQKAKRFLVVGDPLQLTPVVTLPDSLSELLCGKEELLRKWSPHLHSLQQLADGANPFGAF VGPEEHKIWSGLPLRLQRRSYPPMFNICNRIAYSGQMVLPPEMKVDKTPERFIESYWVDV VPARPSLSNCVSEEVDAAEEVLNHIDVQIAMKHLQGEVFEKKSVLICTPFRTAAATLRKR IKKTGNWLEVERIGTVHTLQGRQSDIVIVVLGSKTNKDGFGARNWATSTPNLLNVAVSRA KETVIFIGNYEDWKEHNYVPTIMAELEDYGKGRLKLSEVLNEPERNN >gi|301349801|gb|ADCQ01000049.1| GENE 6 6729 - 7628 735 299 aa, chain + ## HITS:1 COG:RSc0570 KEGG:ns NR:ns ## COG: RSc0570 COG2962 # Protein_GI_number: 17545289 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 4 285 8 289 298 202 39.0 9e-52 MNKGVVSVLVAYLIWGLYPFYFHAMQHVAPTEIVIHRVLWTFALLAVYLFCSRRWRWIQK AVTDRRTVAVFLMSSVLITANWSTYTYAIVTNQTLEASLGYFMNPLVSVLLGTVFLKEKL NKAQMLAIVFACAGVMWVTFKQGEFPALGLTLALSFGFYGLVRKMAPLGSLEGLTLETAF AFPVALLATFYFAGNGDLTFVHGTSWDKFWLIMAGPITTIPLILFAYGLKQVPYSTVGFI QYLSPTMVFFIGLFFFGEELQVDRLIGFILIWAGVLIFVGENFFRSHSGYRTEFNQLSK >gi|301349801|gb|ADCQ01000049.1| GENE 7 7625 - 8245 524 206 aa, chain + ## HITS:1 COG:PA4857 KEGG:ns NR:ns ## COG: PA4857 COG2095 # Protein_GI_number: 15600050 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Pseudomonas aeruginosa # 7 193 5 189 197 107 37.0 1e-23 MTLSDCFALFVKFFFLLTPPFVMSAFLSVTKDNTIQERNTLAIWITLWILIISGVLLFFG GFIFKIFGITLDAFRIGTGALLFLTAVSLVRGDSIRVPSGDSVQSLAVVPMAIPITLGPA SIGVLMVYGGEIKTGLGFFLAYLSISAAVICVGALLLVSNYIQKAIGKNGLVVLSKLTGL ILAALSAQMIFEGADAFLLQTLEKLK >gi|301349801|gb|ADCQ01000049.1| GENE 8 8367 - 9995 2108 542 aa, chain - ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 35 422 46 462 468 251 40.0 3e-66 MKKPFAITLDVGTSLENRTGSWRTLRPTYVHKLPPCNHQCPAGEDIQGWLFYAESGNYEK AWRHLTKRNPLPSCMGRVCYHTCEGACNRGKLDASVGINSVERFLGDNALENGYKFVKPE QKTGKKVLIVGSGPAGLSAAYQLALKGHEVTIKEGSPEAGGMMRYGIPKYRLPRRVLDQE IARILDLGVKLELNTTVKDIEEEKKAHCYDAVFLAVGAGMAKNAYIPGGDAKHMLDAVSV LRSMEGEEEPLLGRKVVVYGGGNTAIDVARSAKRMGAEPLIIYRRTREKMPAHDFEVEEA LQEGVSVKWLSTITEAENPKEIRIEKMELDENGNPQPTGEFETVEADTVVLALGQNVDQS LIDKIPGLDIEKGVVKVDRFMRTGVPGIYAGGDMVPGDRNVTVAIGHGYKAAYGIDCYLK GKEPVDHPKKEIATFESLNTWYYSDAPKTVRPMLDLVRRQSTFDEVQHGLTEENALFEAR RCMSCGNCLQCDNCYGVCPDNAVIKTGDDNVPYIFNYDYCKGCGVCASECPCGAIKMEPE SI >gi|301349801|gb|ADCQ01000049.1| GENE 9 10008 - 11069 1220 353 aa, chain - ## HITS:1 COG:MA0031 KEGG:ns NR:ns ## COG: MA0031 COG1013 # Protein_GI_number: 20088930 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Methanosarcina acetivorans str.C2A # 38 331 10 295 296 275 48.0 9e-74 MSEHQIKFYQTGTFTVGNRLLQPDQRSGQANIERYNSLNSGHRACQGCGEALGARYAVDA AMRATEGRLIAANATGCLEVFSTPYPETSWQLPWFHSLFGNTAAVGSGMAAVARVKAKKS GKPLVRVIAQGGDGGTTDIGFGCLSGMFERNDDVLYICYDNEGYMNTGVQRSSATPPAVR TATTQIVGKHPGNAFGQGKDVPLIAMAHGIPYVATATIADLRDLERKVAKAMTFHGARYI HILVPCPLGWGAKSADTVKLARLAVETGLFPVFESEYGEITKVTKIRQLQPVENYMKLQK RYAHLFGPKGDADAFARIQAIAQRNIRRFGLLGEEEPEIIPPSVQADERADKV >gi|301349801|gb|ADCQ01000049.1| GENE 10 11073 - 12329 1735 418 aa, chain - ## HITS:1 COG:MA0032 KEGG:ns NR:ns ## COG: MA0032 COG0674 # Protein_GI_number: 20088931 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Methanosarcina acetivorans str.C2A # 5 370 14 383 403 357 47.0 3e-98 MLKQIEGSLGVAEAVALCRPEIICAYPISPQTHIVENLGAMVKKGTLEDCEFLNVESEFA AMSVAIGGSVAGGRAYTATASQGLLYMAEAVYNASGLGLPIVMTVASRAIGAPINIWNDH SDSMSQRDCGWIQLFAEDNQEAIDLHIQAFKIAEELSLPVMICMDGFVLTHAFERMDIPS QEQVDQFLPPYDPRQSLDPEQPVSIGAMVGPEAFTEVRYLAHAHHLQALGVIDRVAKEYE EIIGRKSGGLVDLYRAEDAEVMVVALGSVIGTIKDVIDEMREDGKKVGLLGIKSYRPFPA AEVFTALEGAKTAVVIDRSLQVGIGGVVTDDVIRSTRKLSDLDICCVISGLGGRAITKRS LHKAFDAALKGELPELTFLDLDKKVVQDQLKHEQEERHSGPMAEAIVKAVADLHKGDL >gi|301349801|gb|ADCQ01000049.1| GENE 11 12342 - 12914 768 190 aa, chain - ## HITS:1 COG:MA0034 KEGG:ns NR:ns ## COG: MA0034 COG1014 # Protein_GI_number: 20088933 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Methanosarcina acetivorans str.C2A # 1 183 1 177 182 166 49.0 3e-41 MFQIRLHGRGGQGVVTSAEMLSLAAFTEGHYAQAFPSFGSERTGAPVVAFARVSDKPIRL REPIMEPDAVLIQDRTLLESVNVFSGLTENAYVLLNSSQSPEELGLEDLVNRLPKGHVIT LPATKFALARIGRPLPGAAMLAGFAALTGKLKLESVQQAFQTRYKGKVAQANADVAADAY SFVLEAKNRL >gi|301349801|gb|ADCQ01000049.1| GENE 12 12939 - 15074 2246 711 aa, chain - ## HITS:1 COG:AF1511_2 KEGG:ns NR:ns ## COG: AF1511_2 COG1042 # Protein_GI_number: 11499106 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Archaeoglobus fulgidus # 10 701 7 691 691 489 37.0 1e-138 MSYLDKIMCPRSLAVIGASNKEHTIGSDIMKRLVEYGFTGKIFPINPKDSEIQGMTAYPS VLEVPEEIDMAVIVINAKYVLSAVDQCHQKGIKGIVVISAGFKETGGAGAELEAKLVNKV REYGMTCVGPNCLGVVNTDPKFRLDACFAESLPVRGDIGFVSQSGALGGGILNILQDLNL GFAQFISIGNQADVNADSAIEYWENVDDVKQILLYMESIADPKRFRALASRTTKKKPIIA LKAGRSAAGASAASSHTGSLAGADKAADALLKQSGVIREFSLQDLFNTAKVFSHCPIPNG NRVAIVTNSGGPGIMATDAVCEHGMEIAHLSDQTKEALRSFLPAAASVKNPVDMIASAPL EHYKKTLETVLADDGVDMVVVIYLPFLGLKDIDVAKAVMEIRAAHPDKPIVGVFMTKNEF FAHLSETEVNVPFFMFAEQAVEGLARLNQQRLWRERTDTPAPRYSVDTETVEAVFKQAAA DNRVQLTTGESLQVLAAYGVRVCRDGEAKDADEAVALANKIGYPVVMKLNSKKISHKTDV GGVRVGIKDADQLRAEFTDLVNKLTEKGLMDGFEGVIIQEMVKSDREMVCGCAKDPQYGQ MMMFGLGGVFVEVMKDVTFRLAPLTVEDASDMIHSVKAYKLLAGARGAVPAQINKVEETL LRLSQLVEDFAFIDELDINPLMISGKDGEPIAVDGRIKFNATEALVALSIA >gi|301349801|gb|ADCQ01000049.1| GENE 13 15675 - 15788 220 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKGKREQKDKAKIIAVSSVMSIIGSGAILLAAQFFS >gi|301349801|gb|ADCQ01000049.1| GENE 14 15845 - 17542 941 565 aa, chain - ## HITS:1 COG:MA2942 KEGG:ns NR:ns ## COG: MA2942 COG5421 # Protein_GI_number: 20091761 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 129 508 100 473 521 96 25.0 1e-19 MDPIRNIIKVRVNNQDYLYQYENAWDKEKQRSYSKHRITVGKLVDGKVQLGRKFLTNNPQ YKDIEFKFEDHKLIATSDLPTVNDAGVNAVLSKTFPLNAGASYVLKEMAQQDGLLGDLKA VFPHHWKDLLALAMFFVIYPERNLANYDITAAHSQLGGNPLDSQGISELLESITADQRQQ YMKRRLNHSCGGENNNFWAFDTTSISSYSETLSKVAYGHNKEDPEMPMIKIALLIDETNG EPLYYKVLNGSIADVSLLRNLFVDLVRLRDKQINLVLDRGFCSEHNFLMMFRNHVGFLAD LRSDLAIAAQTVDQLMPSLRLALPEYYSPTIGCYCATKQIDWYSATRAHGKEQYPFYIHV YYDKQREASEILNMTELVESFKARLEKGEVPNAPYFRKFFKKKKDKQKTDKPDNVKPKDL YEFDVQSWVTFTRTCGCFVLGSGEVKSASEALNIYRQKDTVEKAFNNYKDKCGGRRIRCR ECALEGKVFVTYLSLCLRLMLERRLERADNDPLNTPRVLERLNSLVLYRHETDDKPKLYW QEIPKEDRLLMERLRIKIPAPIFVI >gi|301349801|gb|ADCQ01000049.1| GENE 15 17717 - 17980 159 87 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859393|gb|EFL82474.1| ## NR: gi|302859393|gb|EFL82474.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47] # 1 87 1 87 87 157 100.0 2e-37 MKALYLSFISLLILFSSVAFSATIAQNHQVKGLNCEACHTTMPMADYNKCIACHGGKERL AASNPQHSALKTADIPCSVCHKGHTER >gi|301349801|gb|ADCQ01000049.1| GENE 16 17986 - 19170 1212 394 aa, chain - ## HITS:1 COG:mll4732 KEGG:ns NR:ns ## COG: mll4732 COG1304 # Protein_GI_number: 13473966 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Mesorhizobium loti # 86 387 33 351 352 115 29.0 1e-25 METRRMFFSRRNILKGSAASLAAAALGSSSAAFAQQSSAPTIRPLTGKMTYEEVRNRARE MMIPRCYVCPECNGRGPCIGQVPGFGGMGASRGFQANYDSLAAVQLNSRVVHGVHVPDTS IDFFGTKISMPVIAAPTGGTTYNMGGKLTEEEFVNAICGGCNKAGTLGAVADGIGDPLPV YEKRLQTLKEHGYKAIVGLKPRLQKDIIERMRLAEEAGIIALTIDLDSAGRAARATKGQT VEPKTFEQLKELVKASKLPLLFKGIMTPDEAELCINAGAAGIVVSNHGGRTLADTPGTAA VLPRIVDKVNGRCFVMVDGTLARGTDVEKYVAIGADCTLAGRHFVRAAHGGLADGVALFA NKMKNELAVAMVLTGAQTVKDINRSMVVIPDYKA >gi|301349801|gb|ADCQ01000049.1| GENE 17 19393 - 20472 618 359 aa, chain + ## HITS:1 COG:RSc2092_2 KEGG:ns NR:ns ## COG: RSc2092_2 COG1910 # Protein_GI_number: 17546811 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic molybdate-binding protein/domain # Organism: Ralstonia solanacearum # 151 307 27 184 244 104 36.0 2e-22 MKSRLFNIRLSFEITENKSEDFFLLKNDLISLLDAIQRTGSIKAAAEELGYSFRHIWNEL NKWEEELGQPLVSRSRGKNAELSPLAEQLLWTNKEVEAKYKEQIIELQSGISYSFRKAFN SAWDPIVIEGCADSALNLLRRTTDCEIELNFTTSRKGLEALREGKCELAGFNFPKSSSSN SKAFGMFGHLLTENNRLIFFATRLQGLAVAPNNPKKIYSILDIASRKAKFINRREGTGTR ILFDQMLDVLAVKPEEIEGYNDISDTQFFTAVQIAAGKVDVGLCTANVAKENGLDFIPLA KEVYYLAAADAKFLETEKTKNFLQFLRSYDWSEHKEQLEGYDFTGTGKVFKVSDVFTAE >gi|301349801|gb|ADCQ01000049.1| GENE 18 20790 - 21212 308 140 aa, chain + ## HITS:1 COG:no KEGG:GM21_0359 NR:ns ## KEGG: GM21_0359 # Name: not_defined # Def: transcriptional regulator, MarR family # Organism: Geobacter_M21 # Pathway: not_defined # 1 140 1 140 141 82 37.0 7e-15 MENFEIVYLSSLLNEKAGDFIQDELKKYGYPELKMAHGDIFHVLFEAGELSAKEIAGRTR RSKSTVSELVDRLVKLGYVCKKPDPVDARGVKVSLTEKGVAFEAVFGKISEDLSARILSA VEPEELEIAEKVMRKLTSNF >gi|301349801|gb|ADCQ01000049.1| GENE 19 21276 - 21653 542 125 aa, chain + ## HITS:1 COG:no KEGG:BF4112 NR:ns ## KEGG: BF4112 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 116 1 116 117 137 53.0 9e-32 MENFKMVEVKDAPRVELHNLLGLTGCEISINELPAKAAVPFVHAHKQNEEVYGVLGGKGQ LYIDGQVVDIKAGDWFVIRPNGHRAIHASDDEGIKFICIQTKSGSLQEFTAGDAIILEEK TPWLK >gi|301349801|gb|ADCQ01000049.1| GENE 20 21768 - 23024 1127 418 aa, chain + ## HITS:1 COG:CPn0289 KEGG:ns NR:ns ## COG: CPn0289 COG1301 # Protein_GI_number: 15618209 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Chlamydophila pneumoniae CWL029 # 35 405 29 395 395 256 40.0 6e-68 MDKKILAAGMQKGFVGVVVAYFLAIALGILAGIWENHYLMIVVQFISTVFIRLFKFLSIP IICVSIISSLSTLSQNNESAKIFRHTIFYTLSTTILAACVAASLYVLFTPANVAVTGTAP DISNKLGSHSYLDYVESIVPDNFITPFQTANVLSVLLIAAAVGIAIAKMPRESKNQDLMI TFFKASEDVLFTLVNWLIVVLPIGIFAFVASLAQEVSHGVSLGGLGTYFALVISANLIQM FIVIPAFLMFKGFNPIKVAKGMLPALALAFFSKSSAATLPVTMRCAQQNLGEKPQVAQFV LPMCTTINMNGCAAFIFLTVVYLMQNAGLDIHPGVIVAWIFIATLAAIGNAGVPMGCFFL SASLLASMNVPILLMGVILPFYAVVDMIETSLNVWSDSSVSAMVDKDMKELDAVMAAK >gi|301349801|gb|ADCQ01000049.1| GENE 21 23261 - 23926 455 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859399|gb|EFL82480.1| ## NR: gi|302859399|gb|EFL82480.1| hypothetical protein HMPREF0189_02243 [Burkholderiales bacterium 1_1_47] # 1 221 1 221 221 445 100.0 1e-123 MFINDIWSCGVTTKTKKIVAEAQKDGYLLNFLQLELEEGGLPNWKTINSFCELVATSPQN NPPDEAMQSPQEKFDRLMNAIFLKTFNLRNYEEDPLSAGEILLFTKLESIDRRDRFATTA LYLAAPAILKLRGLKGGYDVRRIFSLAAYKAMEGGTAKNKELQILIGDLFEDENLRKAVH RIWYVFKDARGNPEKCARGLRDLADGIYLQAMKAEQARKAS >gi|301349801|gb|ADCQ01000049.1| GENE 22 24059 - 26038 1821 659 aa, chain + ## HITS:1 COG:RSc0976 KEGG:ns NR:ns ## COG: RSc0976 COG0187 # Protein_GI_number: 17545695 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Ralstonia solanacearum # 7 659 2 661 661 837 62.0 0 MSLEQDNKVNDYSEKSIRILKGLQPVKQRPGMYTLTDCPLHIIQEVIDNATDEVLANFAN RIILTEHADGSISVEDNGRGIPVGIHPEEKVPVVEIVFTRLHAGGKFDKGAGGAYSFSGG LHGVGVSVTNALSSRLEVTVWRDGLESSITFEDGFVTVPLNSVKTPRPKKATGTRVRCWP DGKYFDTLTIPKNQLIRLLRSKAVLLPGCEVVYRNEKDNIEQVWKYEGGLKEYLTEQLDR PPLVQPFEAQGFAGADDDTFSQGEGAGWVVCWTDEGQLERESYVNLIPTPLGGTHEAGLR DGVFQAMRSFMETHGLGAKGIKMIVDDVFARASFVLNAKVLDPQFQGQTKEKLISRDALK LVSSFVRPQMEFWLNSHVEEGRKLAEMFIKQAQARQHSAQKIEKRKGSSVAVLPGKLTDC TSGDISRNELFLVEGDSAGGSAKKGRDKEYQAILPLRGKVLNTWEVDQNLLFGNKEIHDI SVSIGVDPHKIGEKPDISNLRYGKICIMADADVDGSHIEVLLLTLFYKHFSYLMETGHIY ISMPPLFKVSVPNKGKKKERRIYCLNEEELKKTVEKLKKEKFTDAQIVISRFKGLGEMDW EELKETSLDPETRRLLPVKVGLPGDDLTGKAMQILMGNKEADARKQWIERHGDQFEPDI >gi|301349801|gb|ADCQ01000049.1| GENE 23 26052 - 28871 2569 939 aa, chain + ## HITS:1 COG:RSc0978 KEGG:ns NR:ns ## COG: RSc0978 COG0188 # Protein_GI_number: 17545697 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Ralstonia solanacearum # 168 910 15 765 781 752 52.0 0 MPKKPRRKLTEADQTELFEEIDGKAVLPAAEDEEPQEKKGKAKKAQPEPEEDIGKGTGFL FDMLEEEPEHSPEAEKSSSEGEKKLEFQPEDATAELAEPASEPKNEDSLEEAEQLAQNLM REDASDMKEELQEVADEVEEAELVPAPAQPRGSDIVEEALKHADTDCDELTLAYFASRAY LEYAISVVKGRALPDVCDGMKPVQRRILYAMKRLGLNPDVKTVKSARVVGEVLGKYHPHG DLAAYDAMVRLAQDFTMRYPLVQGQGNFGSADGDGAAAMRYTEVRLSKYADLLLGELDKG TVKFIPNYDGTHKEPVLLPARLPVLLLNGSSGIAVGMATEIPSHNLTEVGEAAIEVIRNP EITTDELLEIVKGPDFPGGAQVISSASDIKNVYRSGYGNLQVRATYHFEELSRGQWQLVF DSVPYKVSVMKVMSELEALTNPKAPQGKKSLTAKQQQDKQLIMNVMSGMRDESSAEAPVR LVIDPKSKSIDREELVSTILSKTSLETSCKFNLVVIGIDGKPRQKGLKDILSEWVSFRLR TVRARSQTSLNEAEARIHTLEGRLIVLVDIEEVIRIIRGTDDPKKELITHFGLSDTQAED ILEIKLRQLASLDEVKLRKELEKLRNEAERLRGLLTDEKKLRREVTKEIRQDIDTYGDER RTLIEEAKGASIAKQVIDEPVTVIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRS VDNLYILSNTGRIYSIPVSSLPSARGEGTHVSAFVQFQDGDVPFDYICGAPDTVLLFTSD AAMGFFCKMSDLAVRQRGGKSFFILDGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDEL RALSSGGKGTTIMALQDDEKLVAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRR GRKGRFVEAKWEFLGLKPYKLETANKGDDSEEVEESTII >gi|301349801|gb|ADCQ01000049.1| GENE 24 29006 - 29887 982 293 aa, chain + ## HITS:1 COG:STM2486 KEGG:ns NR:ns ## COG: STM2486 COG2321 # Protein_GI_number: 16765806 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Salmonella typhimurium LT2 # 1 286 1 283 287 353 62.0 3e-97 MLWKDREGSSNVEDRRGEGGGFGGGGPRFPMPRGKLGLAVLAVVLVAGYYGIDLTPLLGL DSPMPTQTQSSSYQPSAQEQELAKFSSVALRTTEETWGRIFAQSGKKYIPPKMVLYSGST RTACGYGQAAMGPFYCPSDHKLYVDLSFYKDMQRKLGGGGDFALGYVLAHEVGHHVQTLL GISSQVQKLQSQVSPKEANRLSVKLELQADCLAGVWGHDMQRQGILEKGDLQEALRTATA IGDDRLQREAQGRVVPDSFTHGTSEQRYYWFKTGFDTGNPEMCNTFKAGAGPQ >gi|301349801|gb|ADCQ01000049.1| GENE 25 29947 - 30159 390 70 aa, chain - ## HITS:1 COG:MA1239 KEGG:ns NR:ns ## COG: MA1239 COG3585 # Protein_GI_number: 20090103 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-binding protein # Organism: Methanosarcina acetivorans str.C2A # 1 69 16 84 84 60 57.0 1e-09 MKLSARNVLEGKVLSIKKGPVSTEVDIETKGGERVVASITTASADSLKLEVGKKVYAVIK ASNVMVGTDE >gi|301349801|gb|ADCQ01000049.1| GENE 26 30725 - 32890 2974 721 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 183 720 1 479 484 224 32.0 4e-58 MKLSVIATSVLLAAVSTGAYAYTPGTYTAAIAGQNGPVKVEVTTSADKILSVKIVDQKET EGIGSKAVAALPAEIVKAQSADVQGIAGASVSSAAIKKAVQECLNQAQGKKAAPLALKNG TFEGKAYGNNGWLTVEVTIKDNKITDIKTPGQRETKYLGDTAIREIGKDVLQYQTLNVDN IAGATVTSTALKTAIAQAIEKAGGDIAAFQKPVPEKIKKVAGITKGSADLIIVGAGGAGL SAAVTAKDLDVKNVLVLEKMPVIGGNTLRCASAFNAADPDRQKALPMTETLKEAVVKAIS EKPVSEEHAKLMADVKAKYEAYLKSGSKTLFDCPEWHALQTYNGGDKVGQIPLIRQYSNN VLDTLHWMQSKGSPVMDRVSQGAGALWQRTHQLDAPAGLGLIDPLYQSAVKQGVNFKLGM RVQDLILNDKGRVIGVTATDKVGNKYEFTSKDGVILATGGYSQNKEMRRKSAPHLTPEMV STNQPGATGDGIVIATRHGADTTGMNYVQVYPLATPGTGALQGRARKMSGLDDVIDVNKN GERFVKEDARRDEFVAAIKKQPGGVVYDINDSSIVKPLNSFNEDVETLVSIGRIYKADSL ADLAKQLGMPADKLEATVAEFNKMVEAKNDPKFGRKLFDRPIVKPPFYATPRAPSIHHTM GGLQISTNAQVLDKNGKPIPGLYAAGEVTGGIHGSNRLGGNATADVLTFGRIAAKSAVAY K >gi|301349801|gb|ADCQ01000049.1| GENE 27 33001 - 34200 1384 399 aa, chain - ## HITS:1 COG:RSc0985 KEGG:ns NR:ns ## COG: RSc0985 COG1167 # Protein_GI_number: 17545704 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Ralstonia solanacearum # 1 396 6 400 406 360 47.0 2e-99 MSDNSLTPPKSIRARSSQRSIIRELLKLASQPDVISFAGGLPSPKSFPVKAIEKATDWVL ETQGTRALQYSSTEGEPALRKAIAAHEAELGAPVDPDCIQIVSGSQQALDLMALAYIDEG SKVAVEDPTYLGALSAFKLQRPEFVTLPTDEHGLNPDLIGPEFSGIRFAYVMPTFQNPTG ITITEERRKKLAEKAREYDFWILEDNPYGELWYDRQPPKPIRCYAPERTLTMGTFSKVLS PGFRLGYIIGPKPALDPLTTIKQAVDLHTSTFTQLISARCLDEGLMKTHMPDVRALYRTQ CHCMLDALERYFPEGTTWTKPDGGMFIWVTLPEYINTDDMMKEALDRKVAYVPSSAFYAN EPKFNQMRLSFVTVPPEKIDQGVKVLADLIKEKMAAHNA >gi|301349801|gb|ADCQ01000049.1| GENE 28 34448 - 36352 2253 634 aa, chain + ## HITS:1 COG:RSc0990 KEGG:ns NR:ns ## COG: RSc0990 COG0326 # Protein_GI_number: 17545709 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Ralstonia solanacearum # 7 624 6 639 640 704 56.0 0 MSENKKETLGFQTEVKQMLHLMVHSLYSNREIFLRELVSNASDAIDKLRFAAIDNPSLLA DDPHPSIRVGVDEQKQEITVSDDGIGMTRAEVIEHLGTIAKSGTREFFARLSGDQKKDSQ LIGQFGVGFYSSFIIADKVTVITRKAGDPADAATKWESNGEGEFTVENTTRDHFGTDVIL SVKSEDRDLVSKYRLRTILQRYSDHISTPILMGKDEYKDDKVIDTGEWEAINTGAALWAR PKNEITEDQYKEFYHHVSHDSTDPLCWTHNKVEGKNEYIQLLYVPSAAPFDLWDRENVHG VKLYVKRVFIMDDTNQLLPHYLRFIKGVIDSEDLPLNVSREILQQTRDLRIIRDGTTKRV LSMLEDLAANRASDYDKFWALFGNVLKEGLGEDPTNKERIAKLLRFVSTGSEGKADVTLE GYISRMKTGQDTVYYVIGDTPEAAAKSPLLELFKKKDIEVLLLSGPIDRWMMQFLTEFQG KKLVNIAKGDLDLGDLADKEEKEEKEKVQAEYKPLVDEFKAALGDSVEDVRMTLRLTDSP SCIVTDPNGLDPAFVRMMKAAGQDVPEPKPILELNPNNPLVSRLKEQGAFSPEWAKLFLE QAQLMEGEQLKDPAGFINRMNTMLMDTIGKKSVN >gi|301349801|gb|ADCQ01000049.1| GENE 29 36470 - 37222 726 250 aa, chain + ## HITS:1 COG:RSc0995 KEGG:ns NR:ns ## COG: RSc0995 COG0421 # Protein_GI_number: 17545714 # Func_class: E Amino acid transport and metabolism # Function: Spermidine synthase # Organism: Ralstonia solanacearum # 8 242 45 286 295 186 42.0 4e-47 MAKTKRTPVDFSELGGFRYLHFGSEWIQGGMRINRPYSLALEYQQYMLALLFFRPEPKDI LQLGLGAGGLAKYTWKYFPEAHTKVVEISEDVYMASRMWFKMPDDDDHLEVVFEDCKKYL AGAANTADWLLVDIYDAEAWGPVYDDVPFYRLCKKALRDGGISSYNVFGGEDFTKSLDNI SKAFDGRVLVMPDVAEGNRIILAKKGPKENYSVELLDQRAAELQASRHLPAKKIWKKLKQ ENNLKGEFQF >gi|301349801|gb|ADCQ01000049.1| GENE 30 37219 - 37902 175 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 82 222 87 233 378 72 29 9e-12 MNQEKRLEILKALQADNPTPKTELEYHSNFELLIAVVLSAQATDKSVNEATRVLFPLANT PQAVLDLGPEKFTDIIKHIGLYRSKTKNVMKLCEDLIEHHNGQVPTDFDSLIKLPGVGQK TASVVMNVAFEKPTIAVDTHVFRVANRTGYAKGKTPEIVQKKMERYTPLPYRADAHHWFI LLGRYICKARKPECWKCPIEQYCEYKEKNLEPPEPKKPKKRLLPIED >gi|301349801|gb|ADCQ01000049.1| GENE 31 37871 - 38467 350 198 aa, chain - ## HITS:1 COG:RSc1006 KEGG:ns NR:ns ## COG: RSc1006 COG2878 # Protein_GI_number: 17545725 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Ralstonia solanacearum # 6 163 11 177 268 137 48.0 1e-32 MIEISKIEEILPQTQCRQCGYHDCADYAKAIAVGEKHNRCPAGGPQVISRLSALLGREEL FLNEECGVHVPPEIAEIDPNKCIGCRLCSDACPTDAIIGSPKHMHCVDAERCNGCCLCQL ACPVDCISMVRIDREWTEELARQSKENYLKRNQRRAKIRQEEENLLNAKSLTSDKRDFVA NLIRRKILNESGKAPRNS >gi|301349801|gb|ADCQ01000049.1| GENE 32 38464 - 39246 749 260 aa, chain - ## HITS:1 COG:PA4615 KEGG:ns NR:ns ## COG: PA4615 COG1018 # Protein_GI_number: 15599811 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Pseudomonas aeruginosa # 3 258 6 258 258 167 38.0 2e-41 MSENRTKVRLLQKQVWRKGLVSIRVTKPEGFTFTPGQFVRLGLDIEENGKTEYAARGYSI ASVPSDPFLEFFIVEVPQGLVSPRLCALEAGSELWLETDLWGSLLPERLPASQNLWCLST GTGLAPFLSILRQESVWKKWPTIVLVHSVRLAEDLAYTQLIQKIKDDSSLGGGSGRNLIY IPVVTREATQFLSRRIPDLISSGDLAETAGVKFGSSVSSVLLCGNPAMIKEVRALLKPLG FQAPRRGEPGNLIAENLWQQ >gi|301349801|gb|ADCQ01000049.1| GENE 33 39249 - 39578 478 109 aa, chain - ## HITS:1 COG:RSc1114 KEGG:ns NR:ns ## COG: RSc1114 COG1146 # Protein_GI_number: 17545833 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Ralstonia solanacearum # 1 107 1 108 108 145 74.0 1e-35 MAHVVTEPCILCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPTNAIMAEED VPEDQQEFIALNAELARVWPSITRMKPHTDEAEKWRDVLDKRQYLKKEL >gi|301349801|gb|ADCQ01000049.1| GENE 34 39799 - 40959 897 386 aa, chain + ## HITS:1 COG:RSc1031 KEGG:ns NR:ns ## COG: RSc1031 COG1488 # Protein_GI_number: 17545750 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Ralstonia solanacearum # 1 386 16 403 404 528 62.0 1e-150 MIIDSLLDTDLYKFTMMQCVLHQFPAAQAEYKFKCRNPGTDLQAVIGPINEEIDHLCALH FRKNELDYLRSLRFMKSDFIDFLELFHLKRSSIVVKKAEGSDTDIEIRIRGPWLHTIMFE IPVLAIVNECYYRKFYPNQDLAEGRRRLKAKIESIKDIQDIGISEYGTRRRFSKAWQEEV IKTMQATMGKQFTGTSNVYYAMQLGLTPLGTMAHEYLQACQALGPRLRDSQKYAFEMWAK EYRGDLGIALSDVYGMKPFLLDFDMYFCKLFDGARHDSGDPFEWGEHLIEHYRKNRCDPK TKTLIFSDMLDFPKVISLYNAFHGRIRLGFGIGTNLVNDLGIPSLQNVIKLIRCNDQPVA KLSDDPVKSMCEDESYLRYLKSVFNI >gi|301349801|gb|ADCQ01000049.1| GENE 35 41204 - 42622 1537 472 aa, chain + ## HITS:1 COG:mlr4884 KEGG:ns NR:ns ## COG: mlr4884 COG1055 # Protein_GI_number: 13474086 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Mesorhizobium loti # 9 471 3 468 469 443 53.0 1e-124 MNKKTTFLGAVAALSGLLPISAHAALPGAELSLCWAIPFAGILLSIALGPLLFAHFWHKN YGKVALMWAVLAAVPLFMFFGTQTSVEALAHALIGDYVPFIIFVGSLYIVAGGIHLRGSF VGKPWLNTTFLLSGAILANLMGTTGAAMLLIRPLLNANRRRHYQMHTYIFFIFIVANIAG SLTPLGDPPLFLGFLRGVTFFWTAGHLWEVTGLAVGLLLIIYFLLDTWLYKKELKDNEEL KKPVAYVPFGFEGSVNFVLLACIVGAVLMSGFWKTGVEYHFLSLHIALESLIRDAIFVTA AILSLILTKKEYREANQFSWEPILEVGKLFFGIFVTIVPVLEMLRAGSSGAFAPVVALVT GPDGQPVNAAYFWLTGMLSSFLDNAPTYLAFFNLAGGDPAYLMTTGAHTLMAISMGAVFM GAMTYIGNAPNFMVVSIVQNRGVKMPSFFGFMAWSYGILVPIFLVLTWLFLM >gi|301349801|gb|ADCQ01000049.1| GENE 36 42813 - 43526 519 237 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859414|gb|EFL82495.1| ## NR: gi|302859414|gb|EFL82495.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 237 1 237 237 481 100.0 1e-134 MSHTHYYQEDTDEGLKIAALLNQLIESPGALSKKEWDYLNTLPIGTLMREAGISRKEAVH VFNQIDRIEADVSRIGRFEHLTDAFMMWLVGGSFVLAGVLLALISIPESVWGRITIPVSI SIGLIFIFVPFIARKRALTYDKDCFRHAIVEILGKGLMKRSVLTTDALIREIQPHEPKKA LLEVVEKFAQTQNRKISKYEEICLIKQLLDGYNLKISDLPFEVIEEIDGICPARNPA >gi|301349801|gb|ADCQ01000049.1| GENE 37 43523 - 44476 750 317 aa, chain + ## HITS:1 COG:BS_czcD KEGG:ns NR:ns ## COG: BS_czcD COG1230 # Protein_GI_number: 16079718 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Bacillus subtilis # 30 303 8 286 311 227 43.0 2e-59 MKEVIESTNLEKQLTRHHEGDSDYTHQGTGSSKKVLIASVCLTLGYAVIEVIGGFLSNSL ALLSDAGHMVTDSASLFFALLANVLAGRPASGKYSFGFAKLEVLAALLNALAMFAVVLWI VVEAVERFSSPEPVNGSSVFLVATLGLLINIAVAWTLSRDQKSINTRAALLHVMGDLLGS VAAITAGIVIYFGGPVIVDPILSIFVSALILHSSWGVVKTSVHLLLDGVPDNIPYQEVGS TLEAIPGVYAVHDLHIWDMTANEAALSSHIVLERMDEWPQVLEKAREVLEKKYGISHITL QPEPVEEMKKRFMCIGE >gi|301349801|gb|ADCQ01000049.1| GENE 38 44622 - 46265 2095 547 aa, chain + ## HITS:1 COG:RSc1126 KEGG:ns NR:ns ## COG: RSc1126 COG0504 # Protein_GI_number: 17545845 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Ralstonia solanacearum # 1 545 1 550 554 808 72.0 0 MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLKVTIIKMDPYINVDPGTMSPFQHGEVF VTEDGAETDLDLGHYERFITPKMHKANNFTTGQIYRNVLRKERRGEYLGKTVQVIPHITN EIQDFIARGAHAAGDPDIALVEIGGTVGDIESLPFLEAVRQLSLRAGRNNTCFIHLTLVP YIASAGELKTKPTQHSVGELRKIGISPNVLLCRADRKIPDDERAKISLFANVPMDAVISV WDVDTIYKVPMMLHEQGLDEIVCRCLDLNPKPADLSAWEKVVDRLEHPKDTVKLAMIGKY DLKDSYKSLNEALIHAGIHTGHHVDVTFIEAEILEKEGTDCLKGMDAILVPGGFGKRGTE GKIKAIEYARKNDIPYLGICLGMQLAVIEFARHVCGLGGANSTELDPETPHPVVALITEW KDHTGVIEKRDEDSDLGGTMRLGKQVVPVKPGTLAAEVYGKEVGERHRHRYEVNNSYCDQ FEKAGMVISARTPGENLPEIMELPDHSFFIGVQFHPEFTSSPRFGHPLFNKFIEAAAKYH KEHEKAE >gi|301349801|gb|ADCQ01000049.1| GENE 39 46271 - 47125 865 284 aa, chain + ## HITS:1 COG:RSc1127 KEGG:ns NR:ns ## COG: RSc1127 COG2877 # Protein_GI_number: 17545846 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Ralstonia solanacearum # 1 283 1 283 284 414 73.0 1e-115 MQLCGFEVGLNRPFILLAGPCVIESEQLTLDIAGKMKEITDKLGIPYVFKASYDKANRSS DTSFRGLGMTNGLRILEEVRRQIGVPVVTDVHTADEVPEVAAVVDLLQTPAFLCRQTDFI AACAKSGKPVNIKKGQFLAPQDMKQVVLKARHAAAAAGLSEDRFMVCERGACFGYNNLVS DMRSLVIMRDCDAPVIFDATHSVQLPGGQGTSSGGRREFVPPLARAAVAVGVSGLFMETH PNPCCAKSDGPNMVPLDKMEALLTNLQGIDRLVKSGEFLENQLH >gi|301349801|gb|ADCQ01000049.1| GENE 40 47143 - 48429 1993 428 aa, chain + ## HITS:1 COG:RSc1129 KEGG:ns NR:ns ## COG: RSc1129 COG0148 # Protein_GI_number: 17545848 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Ralstonia solanacearum # 1 426 1 426 427 594 73.0 1e-169 MSEIVEVFGREVLDSRGNPTVEAEVILASGVIGRAAVPSGASTGSREAIELRDGDASRYN GKGVLQAVANVNDEIRDEVVGYDASQQTEIDRAMIELDGTPNKSRLGANAILAVSLAVAR AAAEECALPLYRYFGGINGFTLPVPMMNVVNGGAHANNNLDIQEFMIIPAGLPTFSEALR CGAEIFHALKKIMNAHGMSTAVGDEGGFAPNIDSHEAAIEFIIDAIKAAGYTPGEQVFIG LDCAASEFYADGVYNQKGQGLKLTADEWIAKMTEWVDRYPIISIEDGMAEGDWEGWAKLT EALGDRVQLVGDDLYVTNTSILKEGIEKGIANSILIKINQIGTLTETFEAIEMAKKARYT AVISHRSGETEDSTIADIAVGTNAGQIKTGSLSRSDRMAKYNQLLRIEEELGDIAVYPGL DAFYNICK >gi|301349801|gb|ADCQ01000049.1| GENE 41 48433 - 48738 312 101 aa, chain + ## HITS:1 COG:RSc1130 KEGG:ns NR:ns ## COG: RSc1130 COG2919 # Protein_GI_number: 17545849 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Ralstonia solanacearum # 26 100 14 88 111 65 40.0 3e-11 MARLTKKVKLGVPRFLVLVLAIAVVGIQYPLWVGKGSNATLLDLQDQLKTQKEKNAALEL EITRLEGEADSLRHGSEALESRAREKLNMIRENEYLIRIMP >gi|301349801|gb|ADCQ01000049.1| GENE 42 48911 - 49813 1036 300 aa, chain + ## HITS:1 COG:all0473 KEGG:ns NR:ns ## COG: all0473 COG0428 # Protein_GI_number: 17227969 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Nostoc sp. PCC 7120 # 50 296 8 253 257 163 41.0 3e-40 MSKPMTVARYAKEHRGWFYGCLLLFALVAFFCLKAIYDMTVYGAKAPLYAFIAGMVGFGA TALGSLPGFYLHKLSDKAEDWMLGSSAGMMLAAAIFSLLLPSIETSEKLFTSELAATLWV LFGVFLGVVFLLIINALTPHEHGGQNYEGPEIEVKSGIWLFVLAIIIHNIPEGLAMGISF SAEDMQIGVPLTIAIALQDFPEGLAVVLALCSTHISRAKAVGIGVFSGLMEPVGALFGVS LAGGLGYVYPLGLALSAGAMMFVVFHEVIPETHRRGHHSTATIGLMCGFGLMMILEKIFS >gi|301349801|gb|ADCQ01000049.1| GENE 43 49894 - 50976 1267 360 aa, chain + ## HITS:1 COG:RSc1371 KEGG:ns NR:ns ## COG: RSc1371 COG0787 # Protein_GI_number: 17546090 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Ralstonia solanacearum # 1 355 1 356 375 288 42.0 1e-77 MTRPIRALIDTYALEKNLSLLRAKSGNRFLWGVVKANAYGHGLIGLLPTFDNWVDGLALL DPKEGVDIRKAGWAKAVLLIEGIFAASDIEMADEYGFETVIHNERQIEWLEKAELKNTLR VHLKCNTGMNRLGFRPEAIPQVLFRLNNIPKVEVVDLLAHFANAEVTYEQDKPVTVQNQL AALIQLRGLLPMCLSNTGGILWHEAGDEAVRAGIAMYGVSPDGNVSSQSLGIDPVMTLES EIIAFQDLQPGEACGYGSKFIAHRPTKLAVVACGYADGYPRKDNPHREVVVEGKRVPVIG NVSMDMLTIDVTDLPNVRLGSKVEIWGKNLPVNEVAKGFGTIGYELLCDVNQRVPRVLIK >gi|301349801|gb|ADCQ01000049.1| GENE 44 50969 - 51730 765 253 aa, chain - ## HITS:1 COG:NMA2053 KEGG:ns NR:ns ## COG: NMA2053 COG0730 # Protein_GI_number: 15794931 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Neisseria meningitidis Z2491 # 5 248 4 247 262 116 34.0 5e-26 MDITLTVILVCFVVFFIAGFVDAIAGGGGLITMPVLLLLGIPAHYTLGTGKLASSLGSIT ALITFWKRGAVIKEVVLLGVISSYFGAVIASATTLLISNEKMTIIMIFLLPVAILLSLFC GTLKLTEEDLPKKGVWWRVSAIGLSVGFYEGFFGPGAGSFFLIGIHLLLKAGLVKASGTA KAFNIAANLGAVTTFASAGTLYYSLALPCAVASILGNRLGAIYAVKIGPTLVRSMLYFVL VMLLISLITRFVI >gi|301349801|gb|ADCQ01000049.1| GENE 45 51941 - 53965 1276 674 aa, chain + ## HITS:1 COG:PA5484 KEGG:ns NR:ns ## COG: PA5484 COG0642 # Protein_GI_number: 15600677 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pseudomonas aeruginosa # 259 662 180 594 595 134 28.0 6e-31 MGWLQYVAVEREFTEDDRTRAEISLLVSERLEAKVDNAVSLVTAAAEILKSEEGEPAEKL NLILEELCKASPDILNMHFDDPSAVSVAFSPRKNKRGESNIGVSHKDRSHWKNPYVKDGI SVSGLVQAVGASDRKIVNITKPVYSNGRFVGLAVAALDLEQIAAQVLKGLATDAYQIGIF GRNGEVIFSSGKSVPLHNLSIEERTHRSFTFSNAEYYGYVRPLAVTDWSVGVFSRTVDRK TVLVQLFIRNVFVWLATFLAAIVIGFLASISVVRAVEKLTRQMTAARILPDKSEKIKSPR ELVQLQRTYGRMQERLLTAQTRLKELNSSLEAKVKAQVETIQRHEALLTSLFSDMNEGIV LFNQKLEMRFRNPSAVRLLNLSENEARKRFLALVKEMHQSPDKHLFIHSGVYDLELRMFE SGTKDVFCVIARDATSEVQIDRLKDELIGIAAHELKTPLAGVRMAAECLVKTVQDPEGKE TAAELLESADEMKDMISRWLDVAKLQTGSYEIHPEFCLIKPMIRKALKHFSGFNDFECSL EISPDAAAANVDKQAFMQIIQNLLSNAYKYRKEGSACRVKIQTRKLGDFLELMVEDDGIG VPESALDKIFDRFYQVRMDSARKIGGTGLGLYITKELVLLHKGKVTVASTLGEGTVFTLE LPALPTETANEEEE >gi|301349801|gb|ADCQ01000049.1| GENE 46 53962 - 54675 419 237 aa, chain + ## HITS:1 COG:BH1580 KEGG:ns NR:ns ## COG: BH1580 COG0745 # Protein_GI_number: 15614143 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus halodurans # 1 234 1 238 238 160 39.0 1e-39 MTERTTILIVDDESKIRRLLSRSLEAEGFDVAVADSAMSASEYLKNGHCDLIILDYMMPE IDGMAFLAELRKKSSIPVIMLSAREEIAKKTQALELGADDYVVKPFSIEEMTARIRAILR RSGGVKTGPAATVQAVNGPLVMDPDKRTCRYKDQEIRLADTEFRLLFILVKRPGTIFTHE DLLRRVWGPEFIGELNYLRVSLSRIRKKLTAAGFPGSAISSYSGIGYYIEDLSEEDL >gi|301349801|gb|ADCQ01000049.1| GENE 47 54776 - 56305 1778 509 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 2 504 9 477 484 155 29.0 2e-37 MTTSALKRRSFLQGSLLAAAVIGSTPAVAAEAAKPKFDESFDVIVVGSGIAGTMAALSAA DKGANVLMIEKMSRLGGTSRISGLNFACVGSPAQKAKGVKDTPEQLASDMYKVSGNMGDY EKALEMAKNTARAEAFMTQRGVKWDGRLLKLGGHSQPRVLVSEGDGAGLLNALWTYMKGL KNVTVRTHVKADEVLFNDKGVAVGVKVREKYFFDTPETDDNENKTGVEKRIEAKKGVIFA TGGYARDKAFRSSEVPFLAGVATTTNPGATAGALKILVNAGAQPMHLSLFRFAYPLPTED MIWGMMVDPATGRRFINEGLTRNALAQAVLLKRLQNGDKKPFIIYDEKSLGKFHNLNRVQ RSLNGLNGIDGTMVKYDNLSELCKAFGADPKVVEDELVKYNAMITEGKDAQFDKPLERSG RKVEALDLKGPLFAMVINPRLNYTPGGIRTDLQGRAIALKDGKPIEGLYVVGEASGGLHG QERMTGCSMPECAVFGMIAGESAAQRKSI >gi|301349801|gb|ADCQ01000049.1| GENE 48 56315 - 56722 468 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859426|gb|EFL82507.1| ## NR: gi|302859426|gb|EFL82507.1| fumarate reductase flavoprotein subunit [Burkholderiales bacterium 1_1_47] # 1 135 1 135 135 250 100.0 2e-65 MKFIYKAALLICSSVFAMSVQAAGMPQSSKHAQRGVNCTQCHTTGKFEPVETKQCQTCHN QDQLAQKTDRLNYISRMKNPKTGEVKEHLARINPHDSYHFGKTEDCTDCHREHRPSVNDC ATCHDVKAWNMKDPK >gi|301349801|gb|ADCQ01000049.1| GENE 49 56812 - 57762 1094 316 aa, chain - ## HITS:1 COG:RSc1132 KEGG:ns NR:ns ## COG: RSc1132 COG1281 # Protein_GI_number: 17545851 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Ralstonia solanacearum # 9 314 1 337 338 214 36.0 2e-55 MTENKKENLNNRMIKFLFEGAPVRGACVQMAEEWQEMIKFHHYPENVAALLGQFTAGALL LSSTIKFEGSLILQVKGSGPIAFIYAEVRNPMSVRAMAEIREGAEIKPEMDLQELINKDG KGLCALILDPKDRRPGVQPYQGMVSLESNSVAENLENYMAKSEQLETKLYLAADSKKLGG LVIQKMPSVGGNVSEISDPDAWGRILQLAHTVTKDELLNVPATDVLHRLFWQEKLVPVAE TDITFECNCSRDKTDSMLLQLGKQECMDILKAEGKIEVNCRFCNRKQVYTPEEVEALFVE PNIDAAAMGTDPKRPQ >gi|301349801|gb|ADCQ01000049.1| GENE 50 57898 - 58743 674 281 aa, chain + ## HITS:1 COG:RSc1140 KEGG:ns NR:ns ## COG: RSc1140 COG0613 # Protein_GI_number: 17545859 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Ralstonia solanacearum # 7 278 12 284 286 225 44.0 7e-59 MKQIKRADLHMHSTFSDGVEEPEELVIRAKNNGVELISLTDHDETGGLERMKAAAAQHGL QFVNGVEISADYGEVSIHVVGLDFDPEDEMLQALLGRIRANRFERAVQMAEKLERLGMKG VWEGVLEIVTNPRLIGRPHFAAWLAQNGYVEDYNASFSKYLSRGKPGYVERAKTSIHEAT SAILKAKGIPVLAHPGRYKLNEWEFDSMFKEFTEAGGHAIEVTTGSHTPGQNLLFCDFAQ SRNLWASTGSDFHRPMNRCEPGLQGDLPRTVEPVWNHFRAS >gi|301349801|gb|ADCQ01000049.1| GENE 51 58824 - 59447 745 207 aa, chain + ## HITS:1 COG:RSc1141 KEGG:ns NR:ns ## COG: RSc1141 COG0009 # Protein_GI_number: 17545860 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Ralstonia solanacearum # 1 207 1 207 207 193 45.0 2e-49 MGYILQVMPESPQPHRIEQAAKLLTKGQVAAVSTDTGFSLVCRLDDKEALDKIRLIRQLS EKKHFTLFCDSLSQMSKLARVNNTGYRMAKSVTPGPYTFILEATKEVPRRLSHPSKKTIG LRVPSNKALHALLEKIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG DTTVVDLSGDEPEVIREGLGSVSALGL >gi|301349801|gb|ADCQ01000049.1| GENE 52 59485 - 60138 830 217 aa, chain + ## HITS:1 COG:RSc1142 KEGG:ns NR:ns ## COG: RSc1142 COG1994 # Protein_GI_number: 17545861 # Func_class: R General function prediction only # Function: Zn-dependent proteases # Organism: Ralstonia solanacearum # 5 204 4 200 225 168 46.0 7e-42 MDISSIVQTIAVYAIPLIFAITIHETAHGYVAKLCGDQTAYMLGRLTLNPIKHIDPVGTI LVPGALLIGSALSGMSGIVFGWAKPVPINFRNLRNPKTDMIWVAAAGPGANLIQAILWTI ALKILISMGIYEDFFIKMCVAGVSCNIVLMALNLIPIPPLDGGRIVTGLLPPGMAWQYSR IEPYGMWILFALILTGTLSFFMRPFMRMGQAIVQWFT >gi|301349801|gb|ADCQ01000049.1| GENE 53 60157 - 60747 489 196 aa, chain + ## HITS:1 COG:RSc1144 KEGG:ns NR:ns ## COG: RSc1144 COG0500 # Protein_GI_number: 17545863 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Ralstonia solanacearum # 19 169 16 163 190 106 40.0 2e-23 MRAPYIPSEHAVKGLNAEPSAWIKRFCSLFSPNAKVLDMACGAGRNTKLLASFGNQVTGL DIDERCRPYIEVIPGATFMQADLEGALWPFEDEVFDVIVVSFYLERSLFPHLVKSLKRGG YLIYETFMLPFEGFDGNRAKSPDFVLKPLELIDAFRDTLEVFAYEESLIEKGDCFQRFVA RKPINGKNVPVILPKE >gi|301349801|gb|ADCQ01000049.1| GENE 54 60852 - 61733 1116 293 aa, chain + ## HITS:1 COG:RSc1145 KEGG:ns NR:ns ## COG: RSc1145 COG0329 # Protein_GI_number: 17545864 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Ralstonia solanacearum # 2 293 4 293 294 336 58.0 3e-92 MIKGSIVALVSPMFEDGTIDYDSYRNLIEMHIAAGTNAIVAVGTTGESPTVDYDEHNELV RVAVETAGGRIPVIAGTGSNSTKEAIELSAYAASVGADATLQVVPYYNKPTQEGLFQHFK AISDAVDIPIILYNVPGRTVADLKNDTVLRLLELPNIIGLKDATGDLGRASELLSRLPKD REFAIYSGNDDSALALMLMGGAGVISVTANVAPELMSRMCAMALANDVMGAREINDRLMP LHKELFCEPNPIVPKWALHRMGLIPPGIRLPLTPLSPSKHEQVERALMVGGCI >gi|301349801|gb|ADCQ01000049.1| GENE 55 61827 - 62999 1357 390 aa, chain + ## HITS:1 COG:RSc1146 KEGG:ns NR:ns ## COG: RSc1146 COG3317 # Protein_GI_number: 17545865 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Ralstonia solanacearum # 18 390 27 398 398 234 39.0 2e-61 MSRFPLRACTVAVIAASLTGCQYLGSKFTDEKIQYESTTSRAPLEIPPDLSQLPMDDRFT VPGKTQTVTATQVAETEQARKNASGAAVENGTAPVLPTTVVTKIVKDGSERYIQVNLPPE QVWESLLDFWPSVGLQVEREDPRAGVMETNWAENKANLPQDIIRATLGKLLDSVYSTGER DRYRTRIERNANGGTDIYITNRRMVEVYTSSSEEHTAWQPAPADKELEAEMLTRLSLRLE NDFNPKQKTREEIEKQPALQKAAPVYISREIKGADGKTEALEIDEDFDRAWRRVGVGLDR VGLNIEDRDRSAGIYYIRYLDPDYEVKKRNDEGLFSRWFSKEKPVDAPLYRVKLVSDGNK TTVTAMPDSDKTDPLSTSARILNLLQEQVR >gi|301349801|gb|ADCQ01000049.1| GENE 56 63064 - 63540 445 158 aa, chain + ## HITS:1 COG:STM0699 KEGG:ns NR:ns ## COG: STM0699 COG3467 # Protein_GI_number: 16764069 # Func_class: R General function prediction only # Function: Predicted flavin-nucleotide-binding protein # Organism: Salmonella typhimurium LT2 # 1 154 1 153 161 75 32.0 4e-14 MRRTDREVTDVQKMKVILDRCKIVSYAMWDGEKPYAVIMNFGYEFTPEGKLRLYSHSALD GKKVSIIRGICNKVAAIMECGERVVIDPEIPCKSGSAFQSIMANGTMKILQGSEARHALE VFYRHQTGVVPSFPEGAENFVTMFCLECDEYSCKICVK >gi|301349801|gb|ADCQ01000049.1| GENE 57 63620 - 64138 680 172 aa, chain + ## HITS:1 COG:RSc1149 KEGG:ns NR:ns ## COG: RSc1149 COG1047 # Protein_GI_number: 17545868 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Ralstonia solanacearum # 6 162 3 163 174 99 42.0 3e-21 MAETVIGKDTVAWLKIDVFDLTGNQLQEGPEEGWQVLFGHNDIFPKLEQALMGKKARDTV TLTLEPEDAFGESEPELIRSVPLNLLGDNVEPGMKVEGVPGEPSDGRFYTVIGSDENHVF LDGNHPFAGWALKFVVRVLKVEKATPEEVEEMEAPELLEVADLVKEASETKH >gi|301349801|gb|ADCQ01000049.1| GENE 58 64211 - 66856 1972 881 aa, chain - ## HITS:1 COG:RSc1151 KEGG:ns NR:ns ## COG: RSc1151 COG0249 # Protein_GI_number: 17545870 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Ralstonia solanacearum # 21 824 22 827 882 744 51.0 0 MSDKSIASIANISEQDLLSFTPAMRQFIQIKRDNPTLLIMYRMGDFYETFFEDAELVHRV LGLTLTSRSSTNSGTRIPMAGIPYMTLDQYLVRLVNQGFSVGICEQLGTPGKGLMERKLV RTITPGTLTDESLLNDRSESTLLAVYIQGKGSAVGLAWMTISSGVFKAMETTEAGLLNEI ERINPSEILIADHDRELAEERFPDRSVSALPDWHFDRIRAEKTLLKQFGTSTLEPFGIAD SDLLITAAGVVAEYARSTQGTDLTHITAITRETDNDHLGLDAASRRNLEIVRTLRGEQTN TLFSTLDHCRTAMGSRRLASWLTSPCRDQSEATKRSDAVEILLGSMEKLENINEFLKSIP DFERTATRIALGSVKPRELAALRDALPSLNVIAENLSDLDSELLKETAEELPLPEELYQL LCASLKKEPSTFIRDGNVIAEGFNAELDELRALKNHGGQFLVDYEAREKERTGIPNLRVE FNSVQGYFIEVPKGQIDKVPADYRRRQTLKNVERYITPELKAFEDKAVSAEERSKALEKQ LYEELILKCKPFCQDLLNSAHGVSALDALSSFAQHADTYRWIKPNFVPVTSVEIKGARHP VVEETIENYVPNDCDLDAQHRLHIITGPNMGGKSTYMRSIALIVLLAYSGSFVPAESADI GVIDKILTRIGAADDLARGLSTFMVEMTETASILRQATDKSLVLMDEVGRGTSTFDGLSL AAAIAEDLVVNCRSLTLFATHYFELTQLEKTLPDVVNVHVAAAESSKNIVFLHEIRPGAA NQSYGIAVAKLAGIPRSVIRGAQKVLLKLEERAAQTDDKQLDLFVASEASSTVFPEEELP EEDPTLLELRDQLADVSMDDLSPRQAWELLADLQKKAKETK >gi|301349801|gb|ADCQ01000049.1| GENE 59 66969 - 67898 1156 309 aa, chain - ## HITS:1 COG:RSc1160 KEGG:ns NR:ns ## COG: RSc1160 COG0483 # Protein_GI_number: 17545879 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Ralstonia solanacearum # 51 303 4 259 270 263 50.0 4e-70 MATTTKPMAKTTKATDKKRAPRSTSRKSAENGDQKKHYRPAPSLPMQNEGMLNMAIKSAR DAGKIQVIAFRDRSNLQISNKSLGDYVTEVDKECERVIVETLKTAYPDHAFLGEETGESG KKDAEYTWVIDPLDGTTNFIHGIPQFAVSIALLKNGQPLHAVVYHAMANELFTATKGKGA YLDSRRIRVSGCNSMQDALLATGFPFREGDNYDAYIKSMKVMMEKTCGLRRIGSAALDLC WTACGRFDGYWEKGIKIWDIAAGALIAREAGAFVTDFSGEGDYLQKGEIIAAAPKIFPEM VNVIQGRQA >gi|301349801|gb|ADCQ01000049.1| GENE 60 67986 - 68783 573 265 aa, chain + ## HITS:1 COG:RSc1161 KEGG:ns NR:ns ## COG: RSc1161 COG0565 # Protein_GI_number: 17545880 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Ralstonia solanacearum # 2 253 17 274 287 176 41.0 5e-44 MDFLPQRGRIRFVLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTH AVDVLQNSVCTETLLEALKDVSFACALSGYDREFGPPLADLQTSCEMVKTCLEENPQEEI AFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAHA SRFEGEAPASVEAIEGLYEHLEEAMIACGALNPERPKLMMPKLKRILSRSGLSVPDVDML RGICAAIICPRAERSGRKSKKDGQQ >gi|301349801|gb|ADCQ01000049.1| GENE 61 68801 - 69499 718 232 aa, chain + ## HITS:1 COG:RSc1162 KEGG:ns NR:ns ## COG: RSc1162 COG1045 # Protein_GI_number: 17545881 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Ralstonia solanacearum # 1 227 21 239 268 264 58.0 1e-70 MFSRIKGDVNSIYERDPAARSRWEVLLCYPGLHAIIAHRVAHWLWNKDWKVSARALSQCN RFLTGIEIHPAAKIGDRVLIDHGMGVVIGETAEVGDDCTIYHGVTLGGTSLASGTKRHPT IGKNVIVGAGAKILGGFEIGDNCRIGSNAVVIKPLPPNSTAVGNPARIVDKSKKAVPKKE PEPQPDPKAQVRLAAYGVVANEEDPYVEKIKSLENLLQEQQARLDEMEKKIS >gi|301349801|gb|ADCQ01000049.1| GENE 62 69570 - 71402 1788 610 aa, chain - ## HITS:1 COG:VC2484 KEGG:ns NR:ns ## COG: VC2484 COG1022 # Protein_GI_number: 15642480 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Vibrio cholerae # 39 603 33 595 601 319 31.0 9e-87 MTADNLNNMRVIPDLLAINEKVRPNKVAYRQFDDKSKTWISVTWKEFADMVRSWRKAFTA SGLSKGDHAAVLLPNSITATACDLSILSQGMVPVPLHAVDTPSSSAFILNNSEAKILFVP RTLRWNAMLNAQKEYPYLKLVVTTGNDAEGASEDSPVPVVNLSDWLKQGENTDLKEVSID PDDLAAIVYTSGTTGKPKGVMLTHDNVLSNVKSFSQVIDVGSDDVFLSFLPFSHTFERTV TFYFTLFLGAEVGFARSVLKLAEDLKIIRPTIFVAVPRVFEQFHSRIKASLQSKGSIAAT LADQAEMIGWRRFCRRNGLAVPSSSASWLDSFIWPMLESRIVLPIRDVFGGRLRIAIAGG AALNNAIGRFYNAMGVELRQGYGLTETSPVISVNRENCNNPVTVGQPIPGLQIRLGDIEE LQVKGPTVMKGYWKRPDATAEVFTEDGWFRTGDQADLSDAGRIRIKGRIKEIIVTSTGEK IPPTDMELAIQTDPLFEQVMVVGEARPFITALAVVNEAEWEKFAKEFNVDPSDDRMLMRR DIRMAALKRLKKAASRFPQYGIPRNIRLLKEHWTVDNGCLTVTMKLRRPIIREKLRAEID ELYTVPQNNV >gi|301349801|gb|ADCQ01000049.1| GENE 63 71403 - 73250 1839 615 aa, chain - ## HITS:1 COG:VC2484 KEGG:ns NR:ns ## COG: VC2484 COG1022 # Protein_GI_number: 15642480 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Vibrio cholerae # 32 615 18 600 601 289 31.0 1e-77 MQQPQDNEFTRAEEIRKLRVIPELISHHLEIRGDDPAVCQFNAKTKQWETLSFKELYARA LDWANAFVASGLKKGDRVAMLLPNGIDAVCFDQGALIVGLVPVPLHIIDTPANCAYILED SDTKLLVTVNRARWHAIQATGADLSQLRTVVYIDDESEPESNEVRSVNVAEWLKEGESVL TLPPGPEEEDLAALVYTSGTTGKPKGVMLTHKNIMSDISALLYNIAPNPSDTWLSFLPLS HTFERTTSYYIGLGMGNKVTFSRGVARILDDLKLVRPSIMMSVPRVFEKVAAKINERLKQ KGAVSRLVFNAAVDAGYRNFCRCNGLPVDSAVPAAFDRLMDPLYDKLVRNQIKNSFGGRM RVAVSGGAALSPEVAKTIIGLGIEIFQGYGMTETSPIISVNKIGANHPDTVGPILEGIEA KLGEKDELLVRGPQVMRGYWKRPEDTFKTLDPEGWLSTGDQADILPGNYLKIKGRIKEII VTSTGEKVPPVDIEQAIETDPLFDQAMVYGDNRPFIVGLLVLNKDNFERFVVSLNLDPKD PEILTNKAVIREILKRIKTACKSFPQYGVPRSVLLLKEPWTIENDSLTPTLKLKRRVIVA EHGDEIEKLYENFGK >gi|301349801|gb|ADCQ01000049.1| GENE 64 73257 - 73556 246 99 aa, chain - ## HITS:1 COG:RSp0076 KEGG:ns NR:ns ## COG: RSp0076 COG3636 # Protein_GI_number: 17548297 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Ralstonia solanacearum # 23 88 27 92 99 66 50.0 1e-11 MNLSTKTPSSSLKEDTEELVNSLNRMLQSAQNDAAEIAAALGRIAKNYGMSRLARETGLS RESLYRTLSGQCSPEFSTILKIIRALNLNFAVTDNSSSK >gi|301349801|gb|ADCQ01000049.1| GENE 65 73562 - 74368 363 268 aa, chain - ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 239 164 418 427 63 27.0 3e-10 MQLLKNPDISGKEYQEGEQLGFWNIREYVLCRDGHVCQHCYGRSKDPVLNVHHLESRRTG GDSPGNLITLCETCHKALHRGEITLKAKRGQSFRAEAFVGIMRWEVHNRLRALHPGIEVS NTYGYRTKHARIANGIAKSHCADAFCIAGNLGAERLCEFFFQKQTRRNNRQIHKLSILKG GIRKRNQAPFEVKGFRLFDKVACQGEEGFIFGRRSSGFFDVRKLDGTRISAGISCKKLHL LEKRRTYLTEIRKEEALPPLPEGRGLRA Prediction of potential genes in microbial genomes Time: Fri May 13 06:40:07 2011 Seq name: gi|301349800|gb|ADCQ01000050.1| Burkholderiales bacterium 1_1_47 cont1.50, whole genome shotgun sequence Length of sequence - 14179 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 7, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2357 - 2416 5.7 2 2 Op 1 . + CDS 2557 - 4578 2235 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 3 2 Op 2 . + CDS 4632 - 4811 305 ## BURPS1710b_2808 hypothetical protein + Term 4830 - 4869 3.1 4 2 Op 3 . + CDS 4882 - 5649 784 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 5676 - 5718 5.0 + Prom 5730 - 5789 4.4 5 3 Tu 1 . + CDS 5814 - 6440 410 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Term 6492 - 6529 1.0 - Term 6476 - 6520 3.9 6 4 Tu 1 . - CDS 6528 - 7001 311 ## gi|302859450|gb|EFL82531.1| hypothetical protein HMPREF0189_02294 - Prom 7029 - 7088 1.9 - Term 7088 - 7113 -0.5 7 5 Tu 1 . - CDS 7137 - 8714 1597 ## COG1757 Na+/H+ antiporter - Prom 8909 - 8968 2.8 - Term 8936 - 8969 1.1 8 6 Op 1 4/0.000 - CDS 9015 - 9572 876 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 9642 - 9701 6.5 - Term 9727 - 9766 1.4 9 6 Op 2 . - CDS 9795 - 10883 498 ## COG4394 Uncharacterized protein conserved in bacteria - Prom 10913 - 10972 5.4 + Prom 10877 - 10936 3.1 10 7 Op 1 9/0.000 + CDS 11084 - 13036 1221 ## COG0322 Nuclease subunit of the excinuclease complex 11 7 Op 2 . + CDS 13020 - 13619 222 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 13642 - 13681 5.8 Predicted protein(s) >gi|301349800|gb|ADCQ01000050.1| GENE 1 375 - 1187 929 270 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859444|gb|EFL82525.1| ## NR: gi|302859444|gb|EFL82525.1| hypothetical protein HMPREF0189_02288 [Burkholderiales bacterium 1_1_47] # 1 270 1 270 270 511 100.0 1e-143 MRFTSPSRTIPSICLAIYGCGQLDRVADFINNSGEYVEDGVTFTPGMIAGQYAFEQVKLD RKGYDTRRLQKYLSFLADAGAYFSEEEALQRADDLINNFTADFGHDEDGDATFRIKAQSY RLKKYDCHALWSMINQASLRIESVKPETFCDEDSDEDISSDSLDLVLTSRLYNKQNEPFA TLTQYYTVSKGMLTVEDLIDYSLFDYPNFHDESGKTYDLMENIAQRYYTECIKVVMDYFR DSHKELPDVIRSEEITSMILQPMKLPIMPN >gi|301349800|gb|ADCQ01000050.1| GENE 2 2557 - 4578 2235 673 aa, chain + ## HITS:1 COG:RSp0963 KEGG:ns NR:ns ## COG: RSp0963 COG1328 # Protein_GI_number: 17549184 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Ralstonia solanacearum # 11 665 6 657 683 1035 72.0 0 MSPTMETPMYVIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHIEVMNRLAQQ NVATPTIEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDARRSLVDVESSMNEYLQH LDWRVNANANQGYSLGGLILNVSGKVVANYWLNYIYPPEVGNAHRQADIHIHDLDMLSGY CAGWSLKTLLNEGLNGVPGKVEAGAPKHLTSAVGQIVNFLGTMQNEWAGAQAFSSFDTYL APFIRIDNLDYKEVRQCIQELIYNLNVPSRWGTQTPFTNLTFDWVCPQDLRDQHPLIGGE EVDFTYGELQKEMDMINRAYIEVMLEGDAKGRVFTFPIPTYNMTPDFEWDSPNAHLLFSM TARYGLPYFQNFINSELKPNMIRSMCCRLQLDLRELLKRGNGLFGSAEQTGSLGVVTINC ARLGYVFAQDEEGLFNRLSYLLDLARNSLEIKRKVIQRHMDQGLFPYTRRYLGTLRNHFS TIGVNGINEMIRNFTQDEEDITTEAGHAFAAKVLDFIRDKMVMFQEETGHMYNLEATPAE GTTYRFAKEDKKRFPKILQAGTPDHPYYTNSSQLPVSYTDDPFEALEMQEDLQKKYTGGT VLHLYMNEAISSPELCRDIVRRALTRFRLPYITITPTFSVCPKHGYIPGNHEFCPKCDAE LIAKKKLDMASNG >gi|301349800|gb|ADCQ01000050.1| GENE 3 4632 - 4811 305 59 aa, chain + ## HITS:1 COG:no KEGG:BURPS1710b_2808 NR:ns ## KEGG: BURPS1710b_2808 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudomallei_1710b # Pathway: not_defined # 2 53 837 888 899 84 67.0 1e-15 MNENVKDTNIELKDEERTKCEIWTRVMGYHRPISSFNIGKQGEFAERKYFDEKKCGCSK >gi|301349800|gb|ADCQ01000050.1| GENE 4 4882 - 5649 784 255 aa, chain + ## HITS:1 COG:RSp0965 KEGG:ns NR:ns ## COG: RSp0965 COG1180 # Protein_GI_number: 17549186 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Ralstonia solanacearum # 22 253 31 246 246 192 42.0 6e-49 MKDVFIPIEPEVKDKPAEELLVGGVTRMTTIDFPDCLSAVVFIKGCPWKCVYCQNEDLQS REMNEGDGYVSWEYIDHFLDRRKGLIDGVVFSGGEPCVDPALPDAIKRVKEKGYKIGLHT GGMYPRRLRAILPYLDWVGLDIKAPLSDEAAYEKVVRRKGAAAKVRSSLEMLLEAGVSIE TRTTVHPEYHTEEQILQLARELSDAGIETYALQIYRQPRGLPEEHLLERVGSDYPHEETL KTLESLFKKFIYRRS >gi|301349800|gb|ADCQ01000050.1| GENE 5 5814 - 6440 410 208 aa, chain + ## HITS:1 COG:HI1296 KEGG:ns NR:ns ## COG: HI1296 COG1525 # Protein_GI_number: 16273209 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Haemophilus influenzae # 68 208 29 161 178 104 39.0 1e-22 MKNNGNFKNAGSSRAKTWRNILLILGAVALIASYIADIRDPHPGMETQDNRPFVEQALKD GFQTLHARVTRVADGDTVYIKDDEGKEARVRLLGIDAPESKQAYGVQSAEHLKRNLRDAE YHVQVIYRGRDQYGRIIGKLVADGKDLNLDQVSTGNAWVYRNYLKDLQPGDKNLYLKAED NARAKRIGLWADPNPQNPRDWRREHPRN >gi|301349800|gb|ADCQ01000050.1| GENE 6 6528 - 7001 311 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859450|gb|EFL82531.1| ## NR: gi|302859450|gb|EFL82531.1| hypothetical protein HMPREF0189_02294 [Burkholderiales bacterium 1_1_47] # 1 157 13 169 169 306 100.0 3e-82 MTIDNPDDFCSFKGKDIDFEDEKYDPFPVYRFKPVAMNMLKHCIVPSRLDNLVANLEYIG SRKMANVEELELAESTLSFFTNEFPRYWLKKGSEALLTSVPEILVSMQDPKPVGGESPLS IPFLTESIRGDEGKVAILVAPQCFEKNPDFPDKQMLN >gi|301349800|gb|ADCQ01000050.1| GENE 7 7137 - 8714 1597 525 aa, chain - ## HITS:1 COG:NMA0709 KEGG:ns NR:ns ## COG: NMA0709 COG1757 # Protein_GI_number: 15793687 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Neisseria meningitidis Z2491 # 4 495 6 489 506 303 38.0 6e-82 MEPYAAGWLSILPPIIAIVLALITKEVFSSLLIGIFSGAAIYTFGSGVPDPLIKMLDVTF SLMGQKVDFQILLFCTLLGALVYVLNMSGGTKKYGEIARRKIKNRETSVLATCGLSFFIF IDDYFNCLTVGTVMKPLTDSYRVSREKLAYIIDSTAAPMCIIAPVSSWAAAVGSSLKSTG AFQSDFQAFVSTIPYNFYAIFCLLLVLYLSWTNRDFGPMKKAEENALLKSVEDKGSGATV EKPKHAQSDKGTIWDMLLPLIALIVFAVLALLYDGGYWGKDAAYHTVAAALGNCSASKAL VWASFGALGVAFIMYIPRRVVSFHNFMEGTIEGMKLMLPANVILVLAWTLSGVCRDLLTT QTFVQGMVSSGSGLDLFLPAAIFLVAAFLSFSTGTAWGTFGILIPIAVPVAAAVDPSLTI VCLSATLAGSVFGDHCSPISDTTILSSAGSGCSHISHVSTQLPYAWFVACCCFVGYVAAG FSKGSWIISFGTTAVCFVGFLAFMWNRSFNVRAFAKNIHSPINIG >gi|301349800|gb|ADCQ01000050.1| GENE 8 9015 - 9572 876 185 aa, chain - ## HITS:1 COG:RSc1069 KEGG:ns NR:ns ## COG: RSc1069 COG0231 # Protein_GI_number: 17545788 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Ralstonia solanacearum # 1 183 3 186 188 237 65.0 8e-63 MKTAQELRVGNVVMINNTPMVILKSEYSKGGRGASTVKLKMKNLLSNGGTETVYRADDRF EDIILDKKEVSYSYFGDPLYVWMDDEYNQYEVEAEVMEDVLKYLEDGMKAEVVLYNGRPI SIELPTILVREVVYTEPAVKGDTSGKVMKPAKLATGHIVQVPAFVNTGDKIEIDTRTDEY RSRVM >gi|301349800|gb|ADCQ01000050.1| GENE 9 9795 - 10883 498 362 aa, chain - ## HITS:1 COG:RSc1070 KEGG:ns NR:ns ## COG: RSc1070 COG4394 # Protein_GI_number: 17545789 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 4 362 8 395 396 217 33.0 3e-56 MTIDIFCDVIDNFGDAGVCWRLASIFSCEHGFPVKLYINDAETLSKITAGLDPKKLPCLV QGVEIHDWKDAETSEPSQVVIETFGCRLPIAFEHKIAAARPQPIWINLEYLSAEDWVEGC HSLPSPHPSLNVNKYYFFPGVTKKTGGLMIEKDLFIRQERFAKDRNKFLESFNLDPALFT VFVFCYPGAPLAEFYKALRQRGKEINLLLPKGAATDILSKLYEEHPSRNIQFGVSKMVPQ SEFDKFLWASDSLIIRGEDSFVRAQLSGKPFIWNIYPQTEETHIKKLEAFGERIRPYYGE SYQTWIDMNLSWNKSSRDLTCCWERWCHELPLMKEAAQHWRDHLVSLGSLADNLLSFVKS KI >gi|301349800|gb|ADCQ01000050.1| GENE 10 11084 - 13036 1221 650 aa, chain + ## HITS:1 COG:RSc1071 KEGG:ns NR:ns ## COG: RSc1071 COG0322 # Protein_GI_number: 17545790 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Ralstonia solanacearum # 34 646 14 654 654 679 54.0 0 MTVDTYLIKSVFKFKKTYQRYMETALKETEGKLVNLPDKKFDSAEFLKNLPHLPGVYRYF DKDGNLLYVGKARDLKRRVSSYFQKTLAPRTKLMVDQIASAQITVVNSEAEALILESNLI KTQDPRFNILFRDDKSYPYLKLSSGEYPRLSYYRGALDKRNSYFGPYPNANAAKDTMLLL QKVFQLRTCETSVFNNRSRPCLLYQIGRCSGGCCKKVSPEEYGKSVDLAKEFLRGDSQKV QEDLTRRMNEYSQKLDFERAAVMRDHLAAISNVIHQQSMEAAPDANADIIAAVAAQGEVC VNLAMVRGGRHLGDKASFPSLGRNAELPELEEVLEAFITHHYTQMDVPPVVIINLEERSP RIEELLNTIAGKKVSVIYRPQNIRRKWLELAVTNAKVSLGRKVAEEGSQKKRIGALVQEL GLDIPESEYEDFRVECFDISHSSGEATQASCVVFAGNRMDSSQYRRFNIKDVTAGDDYAA MKQVLTRRYQRVANGEATLPNIVLVDGGRGQVKMACEVFDELGLDKNVIVGVAKGEGRKV GLEELVFPDPNKEPLKLGQESPALMLIAQIRDEAHRFAITGMRAKRAKARNYSRIEDLEG VGSKRRQKLLERFGSLKVLSNASVEDIASVDGISQTLARQIYAQLHGQIS >gi|301349800|gb|ADCQ01000050.1| GENE 11 13020 - 13619 222 199 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 51 188 527 665 904 90 37 8e-18 MDKSVKKVRINIPMVLTWTRIALIPLIVGVFMIPTSVLSMHSQNLLGCIFFIVAAVTDAL DGFIARRYGMGTTLGAFLDPVADKLMVSAALIVLLAFGRVDMLVALVIIGREITVSALRE WMARVGESGKVKVNWFGKIKAIAQMVSIPMLLYFDPIGAWNVYLTGTILIYIAAILTIYS MFVYLKAAAPFFSSEPKQK Prediction of potential genes in microbial genomes Time: Fri May 13 06:40:47 2011 Seq name: gi|301349799|gb|ADCQ01000051.1| Burkholderiales bacterium 1_1_47 cont1.51, whole genome shotgun sequence Length of sequence - 11683 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 8, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 344 394 ## gi|302858722|gb|EFL81825.1| transposase - Prom 368 - 427 9.1 2 2 Tu 1 . + CDS 799 - 3387 1243 ## COG3468 Type V secretory pathway, adhesin AidA - Term 3384 - 3419 5.2 3 3 Tu 1 . - CDS 3438 - 4538 869 ## COG1816 Adenosine deaminase - Prom 4699 - 4758 4.3 + Prom 4645 - 4704 4.5 4 4 Op 1 . + CDS 4746 - 6116 1504 ## COG3069 C4-dicarboxylate transporter 5 4 Op 2 . + CDS 6174 - 6644 397 ## COG2606 Uncharacterized conserved protein 6 5 Op 1 . - CDS 6641 - 7867 1178 ## COG1295 Predicted membrane protein 7 5 Op 2 . - CDS 7877 - 9256 1302 ## COG1760 L-serine deaminase - Prom 9362 - 9421 4.7 8 6 Tu 1 . + CDS 9408 - 9752 306 ## gi|302859204|gb|EFL82286.1| hypothetical protein HMPREF0189_01527 - Term 9652 - 9698 1.7 9 7 Tu 1 . - CDS 9743 - 10927 1083 ## COG0477 Permeases of the major facilitator superfamily - Prom 11001 - 11060 1.6 10 8 Tu 1 . - CDS 11064 - 11576 341 ## Pmob_1156 HNH endonuclease Predicted protein(s) >gi|301349799|gb|ADCQ01000051.1| GENE 1 2 - 344 394 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858722|gb|EFL81825.1| ## NR: gi|302858722|gb|EFL81825.1| transposase [Burkholderiales bacterium 1_1_47] # 1 114 1 114 307 238 99.0 1e-61 MKTPKLPPLIIKKSPSAFYVYTYKNKWDPEKKRSYRASFKKVGTVTSGEKEGRIRWDDHF LAERPELRDFICERKGKDYVFTPMNEGGFTLSQAMEVKQLHAGATWALDQLVVQ >gi|301349799|gb|ADCQ01000051.1| GENE 2 799 - 3387 1243 862 aa, chain + ## HITS:1 COG:YPO2796 KEGG:ns NR:ns ## COG: YPO2796 COG3468 # Protein_GI_number: 16122995 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Yersinia pestis # 371 862 182 638 638 110 24.0 2e-23 MKHPRKIIKAQTANAVLLSLFTAFSPSQVFGSSFASTDANEYLFKEYVPNHKRIHSAPIE HVLRKELEDFVGKGDYVFFSQETEITWNVWTEGNILGNSVATHGKNLIFKADKGSFVLTP ESVSVKGFGSAVQVGYQDSVHISAGEKIILNKPQPGVLDGHKDPYSITLGEGASAFLEAK EIILYGSIEWMGAGSKAELKASESVQILTEKEKHSGLFPLWIFDGALIIDAPTVMINRDI LVSNLDEGYETYVHIGLDERKELKTRDVLFGGEITVRAQSTLKAKSSDSMIFDKALLIDG SGKVEIESRNIALKKLNFQQTGGSASFTVLPEGSLKFADAVSVINGARLDITLGERSVLN GAVFTDFQEGKGGSYISLGAGSIWQNAMHSNVTELTVSEGAVIEVGSDKGLRPLEIQSLK GTGAAFYLPGGRAGSIRQSGDAEGVHSVYLGTSGASLTETKLVHHVFSFDDALPSANRSE FVLGNGGLVEAGPFQYKLDIQPVEYEDQRVWLITSEKEEKPIFPVFPPNDSTVPPLDPGE TPSIPAPAPEVPEVGLSRSGKTVLSVVGSGAAVVQYLSSLADLQERTGELRRGASDGAYV LGRYEKGRFASYSSVGSRLRYSTVSFGTDKKIDQNWIIGAQLGMTDGNIRVEGDAGKTDI HSFGGKAYLTWFKEDAYVDTVLTFNRHKQKMRANLMEGTTAHAAYHNFGFGISSEGGIRF NFLENANGSVWFIEPQAQLSYYRLLGEDFSFSHGMKVKVNSSDSLNMRVGLAAGRAFNSP DGQRTGSLFVKAGVNHDFLGKTKIRMNEFDFKTRSLGTRFYFGVGGEYAFGNQWKAFAQI GGEHGNRLNVDFSCKAGIKYTF >gi|301349799|gb|ADCQ01000051.1| GENE 3 3438 - 4538 869 366 aa, chain - ## HITS:1 COG:SPBC1683.02 KEGG:ns NR:ns ## COG: SPBC1683.02 COG1816 # Protein_GI_number: 19111850 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Schizosaccharomyces pombe # 25 344 7 324 339 120 29.0 3e-27 MRSDNPGFVPDSPFSKQLPEEWLNFFKTFPKLELHCHLLGTTSKETFEELVAESGADVSQ EEINNFYTRGDKPVGVLRIFRCLESKVLSKPSFLTRITLKHIQRVASQGVKYIEFYWNWT GLKHFMTYDEARQAINEGIRQGMQRYGVTARSIPSIDREDTPEAAVELVEEMTKHPDDYT IGLGIDYRETNHEPENFWKAFKMAKEAGFKITIHAGEFGEHWRNVETAMKLLGADRIDHG YTIIDNPELIKEAKASDMHFAVVPTNSYYLRTLSDEEWAIKHPVRKMVELGLKVFPNSDD PTMHHISISESWLLMHNWLDFTLPQLRKMLENSIEAAWVTDEQKAIWKKEWLKEFDRLSV DLPPVN >gi|301349799|gb|ADCQ01000051.1| GENE 4 4746 - 6116 1504 456 aa, chain + ## HITS:1 COG:PM0230 KEGG:ns NR:ns ## COG: PM0230 COG3069 # Protein_GI_number: 15602095 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 2 448 1 440 449 231 37.0 2e-60 MVDSILAVIVLILAGWAIAKNYDAKVVLFIAALVLLYSGLLLGHNVLGAKASTGLSWVDP FKVIKDQFVRQYGNAGLIILTLFGFAAYMSHIGANDMVIKVLTKPLSYVRKPIILIPMVF WVGTCLQIIIPSAASLAVILMATLFPVLRAAGMSTLTAAALIATTATIVPTPLGGDNVVA ARVLGFDNVVDYVAFHLAPITIPALFVMGIVHYFWQTYLDKKDAGMLKELDKEAFIEAER PEKNTPTWYFIFPILPLVLVIFFWVFFRKAKVGLVEITLFSLILAFACELIRKRNIKAGM KDLGIFFKGMGDGFSKVVVLIVAASSMVFGLRVMGLIDAISNSISNFENAKVGLMLAFSG ITGLITFISGSGNAVFYSFIELIPQIAQKAGIDPIMVALPMQCMSNLFRSMSPVAAVIII VSASVKVNPLVLVKRTWVPLMSGVVVVLALSFFKYM >gi|301349799|gb|ADCQ01000051.1| GENE 5 6174 - 6644 397 156 aa, chain + ## HITS:1 COG:FN0673 KEGG:ns NR:ns ## COG: FN0673 COG2606 # Protein_GI_number: 19704008 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 153 1 153 154 156 54.0 1e-38 MSLEKAKKHLEKFGLSDRIRIAKESTATVALAAKAFDCEEKKIAKTLSFMLPSGPILVLA VGDARIDNAKFKHTFAAKAKMIKPEECEQIIGHAPGGVCPFGINEDVKVYLDESLKSMDS VLPACGTSDTGIELTIPELEKSSCCTGWVDITKTLD >gi|301349799|gb|ADCQ01000051.1| GENE 6 6641 - 7867 1178 408 aa, chain - ## HITS:1 COG:RSc1559 KEGG:ns NR:ns ## COG: RSc1559 COG1295 # Protein_GI_number: 17546278 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 9 375 7 377 441 233 36.0 4e-61 MSRRVPAFVTKHANLERMWNFGMFVMERIDKASLKQVASSLTLTTLLSIVPALAVIMAAF SAFPLFAPYREAFEQFIFSTLLPEQYSDQILGYIKQFATQAAGLTAFGLIGLMVSALLCI ATIDSALNSTYEVLKLRSLWQRVLMYWALLTLGPVAIGISLAASSYLTGMAMSGHLSVYA QWLIPIGQLIFQSIILAALYKYVPNCRVLWRDALVGGILIALVFTVFRWGFGIYVMRGSY TTIYGAFAAIPVMLTWMYINWMFVLAGAAITATLPMLRAKRYKDFDKSGDELLSAVALLR ILMLAKESGNPQMTNIELADKIGSYPEAVDALLSRLIQTNYVVKIGSDATSSWALLADAH SKTLEECFEEFSMDMSNSLLQGDTAERRWVKEGLNDQWLQTPMREVLN >gi|301349799|gb|ADCQ01000051.1| GENE 7 7877 - 9256 1302 459 aa, chain - ## HITS:1 COG:PA2443 KEGG:ns NR:ns ## COG: PA2443 COG1760 # Protein_GI_number: 15597639 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Pseudomonas aeruginosa # 1 459 8 458 458 483 53.0 1e-136 MYRIGIGPSSSHTVGPMRAGRNFISLLRSQHLFPEVEGIKVKLMGSLAATGIGHATDSAV LLGLMGKSPSVIDVDSIPDWIKDIKDKNRLLLDSCKPISFTYSKDLTFEPSVLDSYHTNT LIISAFDAKGSELFSRKYYSVGGGFIETEEEAKLKQEPRALPATEEDKKALPYPFSTANE LMKQCRKNGLSMEAVIRANEEVIRSHEVIDDTLDHIWSVMSMCIDRGLNAKGCLPGPLKV KRRANELYEKLLNSPLKVADDPLQVIDWINAYAFAVSEENAAGGRVVTAPTNGAAGVIPA VINYYRQFIPQANKEGIRTFLLVAGAIGALYKKNASISGAEVGCQGEVGVACSMAAAGLA AALGATNEQIENAAEIGMEHHLGLTCDPVRGQVQIPCIERNGIAAVKAVNSVRLAMMGDG SHYVSLDQVIETMMQTGKDMANKYKETSLGGLAVCVVEC >gi|301349799|gb|ADCQ01000051.1| GENE 8 9408 - 9752 306 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859204|gb|EFL82286.1| ## NR: gi|302859204|gb|EFL82286.1| hypothetical protein HMPREF0189_01527 [Burkholderiales bacterium 1_1_47] # 1 114 1 114 114 225 100.0 5e-58 MEIKALLVASVLAGQFGLCYASSDGDLIEGIIPEPDSISVTSVVIEPFHPDFEKHSAGLT AGKTPVCLKITRVREADGLSWVTQTTVNPLFTEEACRRASTETPSGREHLFHQD >gi|301349799|gb|ADCQ01000051.1| GENE 9 9743 - 10927 1083 394 aa, chain - ## HITS:1 COG:ECs1866 KEGG:ns NR:ns ## COG: ECs1866 COG0477 # Protein_GI_number: 15831120 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 3 355 5 357 387 185 35.0 1e-46 MYSVYLIIVLGMLSAFGPFVIDMYLPAMPEMTKVFSASVSSVQLGLTFCMVGLAFGQVIF GPLSDKYGRKPGLYFSLLLYIVSTLFCCLSQNIDTFNIARLLQGLGGAGAIVYSRSAPTD LYSGKELAKIIAIVGAVNGIAPVAAPVIGGSVANLIGWRGIFYILLGIGVVITAMVIPVK ETLPKDAREQGSFLRSFEGFILVCKVPNFAAFTTVFGLSMGALFAYISSTPFILQNEFGL SQFHFSLLFALNAIAIGAGALLAVRFSTTAKATYFGTAGSLIAAVLGLVFGLTTKDLYTY EGSVLLMVFCLGFIFTGATATAMNLGRKYAGAASAIIGSIGFLLGGIVSPIVSLGNIQVT SFAVCVVTLGLGVLLLQFFTTETHGTPTNRTHQS >gi|301349799|gb|ADCQ01000051.1| GENE 10 11064 - 11576 341 170 aa, chain - ## HITS:1 COG:no KEGG:Pmob_1156 NR:ns ## KEGG: Pmob_1156 # Name: not_defined # Def: HNH endonuclease # Organism: P.mobilis # Pathway: not_defined # 1 162 258 417 422 167 55.0 2e-40 MGIMRWGVLNRLKASHPKLEVHNTYGYRTKHARIANGIAKSHCADAFCIAGNLGAERLCE FFFQKQTRRNNRQIHKLSILKGGIRKRNQAPFEVKGFRLFDKVACQGEEGFIFGRRSTGY FDVRKLDGTCISAGISYKKLHLLEKRRTYLTEIRKEEALPPPPEGRGLRA Prediction of potential genes in microbial genomes Time: Fri May 13 06:41:12 2011 Seq name: gi|301349798|gb|ADCQ01000052.1| Burkholderiales bacterium 1_1_47 cont1.52, whole genome shotgun sequence Length of sequence - 10498 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 378 - 420 9.3 1 1 Tu 1 . - CDS 439 - 1713 1601 ## COG3069 C4-dicarboxylate transporter - Prom 1895 - 1954 3.6 + Prom 1667 - 1726 5.0 2 2 Tu 1 . + CDS 1910 - 3571 252 ## PROTEIN SUPPORTED gi|163739394|ref|ZP_02146805.1| 50S ribosomal protein L36 + Term 3620 - 3654 6.0 - Term 3606 - 3640 6.0 3 3 Op 1 . - CDS 3660 - 3986 468 ## gi|302859209|gb|EFL82291.1| hypothetical protein HMPREF0189_01532 4 3 Op 2 5/0.000 - CDS 4017 - 5360 1402 ## COG0733 Na+-dependent transporters of the SNF family 5 3 Op 3 . - CDS 5381 - 6715 1314 ## COG0733 Na+-dependent transporters of the SNF family - Prom 6768 - 6827 3.2 6 4 Op 1 . + CDS 7763 - 7951 270 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 7 4 Op 2 . + CDS 7981 - 9294 1197 ## COG2195 Di- and tripeptidases + Term 9310 - 9338 1.0 + Prom 9353 - 9412 7.6 8 5 Op 1 . + CDS 9470 - 9703 99 ## 9 5 Op 2 . + CDS 9718 - 10239 574 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 10 5 Op 3 . + CDS 10258 - 10498 93 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein Predicted protein(s) >gi|301349798|gb|ADCQ01000052.1| GENE 1 439 - 1713 1601 424 aa, chain - ## HITS:1 COG:PM1299 KEGG:ns NR:ns ## COG: PM1299 COG3069 # Protein_GI_number: 15603164 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 421 2 429 432 337 51.0 2e-92 MTLTAWIAIAVILVTVYCLIKRYETRLVLFTAGLFLCCIAMKPMAALDQFAKSMANASLI MAICSSMGFAYVVTTTGCDKNLVKFLAAPLNKLGILLIPATTIITSFINVAIPSASGCAA AVGATFIPVMIRAGIRPAAAGAAVLMGTFGSNISPGTSHNSVVAKIANMDMMDLISLHTP YSIAMVLIGAVGLTIVCLILRDNKPTAKELEDYYTSADHSGGIERINPLKAIAPLVPLVI LLLGNSYVPVIKMGVAQAMVIGAIFALIVSWVNPQQFTKDFFKGMGEGYGSVMGIIITAG VFAAGLKATGLIDAFVEVLKSSNEIARWGGSFGPFIMAAITGSGDAATFAFNEAVTPHAA SFGMPIPNLGAMALISGQMGRTMSPIAGVVIVLSGLAMVPPIQLVKRTAIPLIVGVVVLA LTIV >gi|301349798|gb|ADCQ01000052.1| GENE 2 1910 - 3571 252 553 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739394|ref|ZP_02146805.1| 50S ribosomal protein L36 [Phaeobacter gallaeciensis BS107] # 188 533 35 384 409 101 25 2e-21 MNDWLTRVSAASGIPSEIFILGFMAFFLLIFLAIGIIYCLIRLRSISANTLQTIAQARMA WREDLGAAVTQSKDLIADRMKPSFIETERTLERSFQEVSAGIRSETFASLKAVQDTLNQS LTRNDEQISSVNKRFEELSKNIREEIAESGKVVQSTLNQSLIRNDEQIKSLNERFEELSK TLRGEIFANLKAVQDTLNQSLTRNDEQIRGVNQRFETLSSTLNTSLNELRKQIDDDLKAL NKDNEAKLEKIRETVEEKLQNTLTSKVGESFSQVTQQLNRVYEGLGQMKELAEEVGGLKR VFVNVKSRGMLGEVQLEALLKEYFTESQYVKNVHPVPSKPKMVVEFAVKLPGLNGRTCLL PIDAKFPVEDYQRLLQAADEGDREGVAEARSKLRTRFRNEGKSIAEYINVPETTDFAIMF IPSEGLYAEALALEGLTNELFTSYRVYIMGPSTLASALCAYRAGFQTLAIEKKSSEIRKI LSSVQTEFAKYGEVLNKLKSQVETVAKTVDIVQTKTRKMNLQLEVASESDKEEDQPMSLP SPVSNQSSLTSEQ >gi|301349798|gb|ADCQ01000052.1| GENE 3 3660 - 3986 468 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859209|gb|EFL82291.1| ## NR: gi|302859209|gb|EFL82291.1| hypothetical protein HMPREF0189_01532 [Burkholderiales bacterium 1_1_47] # 1 108 1 108 108 198 100.0 9e-50 MALPIEQLYKARDFLNLKNISANHVELSFKNPVIAMLAKGKVAEIASQCSPDGAFTKCEM HGNDLHLDFNPEYVSERLMAEIFDAAPERARDAARELAAFVAEKTMKA >gi|301349798|gb|ADCQ01000052.1| GENE 4 4017 - 5360 1402 447 aa, chain - ## HITS:1 COG:NMB1707 KEGG:ns NR:ns ## COG: NMB1707 COG0733 # Protein_GI_number: 15677555 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Neisseria meningitidis MC58 # 11 402 6 397 445 272 42.0 1e-72 MSQASKQQEKTFTGKVGFVLASVGAAIGLGAIWKFPYMAGAEGGAAFLLPYIIFSFTLAF GLLLTEITLGKAGKGGIVTAYRNLGGPFWSVLGYLGIIIGFVVLSFYSVVGGWCLLYFFE AIIGFPSADPETLGALFGSLSSSPWVAISAQVGFLALVGFVVAFGIRGGIELCSKILMPM LFIFMIILIITGLMQPGAMKGVEYLFLPDFSKFSWKTLLDSMGLVFFSFSVGAGCMITYG AYIDDKTELVSSTFWIVVLSLLISLMAGLMILPANFAFGMDPAAGPGLTFITMPVIFAKL PFGYLFSIVFFFCLIIAALTSAVSMLEIDITWMVQELNMKRATAVTVCLLFMLILSIPCA LSFGLLADYKIFGKTAFDLADFFVSNLGLPIGGIIACLLAAWFAWDKVHTHWTSLQNYPG WKKVLRVCIGILCPALVLAVLISGLMN >gi|301349798|gb|ADCQ01000052.1| GENE 5 5381 - 6715 1314 444 aa, chain - ## HITS:1 COG:BH1128 KEGG:ns NR:ns ## COG: BH1128 COG0733 # Protein_GI_number: 15613691 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Bacillus halodurans # 4 438 8 443 453 287 40.0 2e-77 MSDARSNWSSKTGMILAATGSAVGLGAIWKFPYMAGANGGSAFIIPFILMVLFFGVTLIL AEIIIGRAGRGSSVTSFRRIGGKFWAPLGFVGVLCAFLIMTYYSTVGGWCLTYLFEAIMG NAASSDLAMLEKTFLKTVSTPVSAILYQTLFLAITAGVLIFGVNKGIERISKVLMPLLFV LMIVLIIRGLTLPGAWEGLKFLFSPKWDQVTANSLLNAMGFTFFSLSVGMGIMVTYGSYI SHKENLTTTALWVSVLAFISCILAGLMVIPPVIAFGLNPSAGPGLTFITMPAVFSHIPLG DVFAVCFYGCLLVAALTSMISLFEVPLAYLMDEFHFSRKTASVLLFIVLSICSIPSALSM GPWADYKIMDKNIFDAMDFLCCNILMPLSALFVVAMTGWFFFDRTKYEINSSVKHSDGFM KFFRFMLAFVAPCFIVVVAIFNLI >gi|301349798|gb|ADCQ01000052.1| GENE 6 7763 - 7951 270 62 aa, chain + ## HITS:1 COG:RSc0810 KEGG:ns NR:ns ## COG: RSc0810 COG0425 # Protein_GI_number: 17545529 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Ralstonia solanacearum # 1 60 16 75 75 65 58.0 2e-11 MPMLRTKKALAKMQPGEKLLVQATDPHALRDLSQFADQTGNKLLSSSEEDGIINIVMQRK EE >gi|301349798|gb|ADCQ01000052.1| GENE 7 7981 - 9294 1197 437 aa, chain + ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 26 415 20 412 412 246 38.0 6e-65 MTMPVKDAPFLEERTAAVMESVFNDPIVKKALEQAVPQEIFTIEEQIEICEVPAPPMKEQ TRAAMIAEKINSYGLEASIDPVGNVIACRKGTDPDGPVCVISAHMDNSFREGTDTTVRRQ NGRLFAPGISDASRALACMLQVIRMVVNNDIKTKGTLLFIATVGQEAEGDLRGVKRIFYS SGIHVDGVLVLDGADPGRLLYGSVGSKRYKIEYSGPGGHSYLNFGQYPSATQALCRAGAL LANLQVPAEPKTTFTLATMSGGSSVNAIAEHAECEIDLRSEDPQMLDGLVQEVLPLFAFG AQLENQRWNVTDPALQVRCKVTPIGHRPAAVSKPDSPVLQAARAAQMALGIELTEYMSAS TDQNVPMSLGIPSTSLGAGGREGFNHSLSEWFEPVRSYEGPQLCLLTALALVGLENGADP MLPIYTAVPRAQWQDRL >gi|301349798|gb|ADCQ01000052.1| GENE 8 9470 - 9703 99 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQMPESISRKEIIACRLRCSLGSHFSGISRPFVEDVEFIAPLNYLLRNLNAKIHAKRFLS PRDFKKINNYPSYSNVS >gi|301349798|gb|ADCQ01000052.1| GENE 9 9718 - 10239 574 173 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 48 144 42 137 484 63 40.0 2e-10 MKVFNRRNVLKGGLVGSMAAGFASFVGASHAAEPAAKAPAQNDKNTYDVIVLGAGPAGLV TAIAAKQAGAKKVVVFEKRDRPDGNAIFALGSVCGWGSRHQKEQGIKDTADDFYAMMMDV SKQMGDKALNRTYTDNISAGIDWLEKDIGVKFGKIRPMPYPRLGRTLSCTEIS >gi|301349798|gb|ADCQ01000052.1| GENE 10 10258 - 10498 93 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 80 1 80 181 147 100.0 3e-34 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGLSIP Prediction of potential genes in microbial genomes Time: Fri May 13 06:41:53 2011 Seq name: gi|301349797|gb|ADCQ01000053.1| Burkholderiales bacterium 1_1_47 cont1.53, whole genome shotgun sequence Length of sequence - 75825 bp Number of predicted genes - 67, with homology - 66 Number of transcription units - 40, operones - 18 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . + CDS 1333 - 1713 635 ## Sputcn32_0810 flavocytochrome c + Term 1734 - 1783 2.9 - Term 1721 - 1771 2.1 3 2 Op 1 . - CDS 1788 - 3038 1127 ## gi|302859217|gb|EFL82299.1| hypothetical protein HMPREF0189_01540 4 2 Op 2 . - CDS 3104 - 3880 826 ## gi|302859218|gb|EFL82300.1| conserved hypothetical protein - Prom 3984 - 4043 6.7 - TRNA 4096 - 4172 94.5 # Asp GTC 0 0 + Prom 4435 - 4494 3.6 5 3 Tu 1 . + CDS 4543 - 5952 1814 ## COG0471 Di- and tricarboxylate transporters + Term 6033 - 6081 6.1 + Prom 6312 - 6371 4.8 6 4 Tu 1 . + CDS 6394 - 7602 1354 ## COG0133 Tryptophan synthase beta chain - TRNA 7673 - 7749 94.5 # Asp GTC 0 0 + Prom 7988 - 8047 4.9 7 5 Op 1 . + CDS 8097 - 10022 2452 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 10029 - 10064 1.7 + Prom 10025 - 10084 3.0 8 5 Op 2 . + CDS 10111 - 10611 217 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 9 6 Tu 1 . + CDS 10731 - 10913 172 ## gi|302859223|gb|EFL82305.1| hypothetical protein HMPREF0189_01546 + Prom 10955 - 11014 5.5 10 7 Tu 1 . + CDS 11041 - 11769 406 ## COG2188 Transcriptional regulators + Term 11772 - 11810 5.0 - Term 11759 - 11796 6.2 11 8 Op 1 . - CDS 11818 - 12924 1570 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 12 8 Op 2 . - CDS 12961 - 14166 1089 ## COG0116 Predicted N6-adenine-specific DNA methylase 13 8 Op 3 1/0.000 - CDS 14245 - 15531 1489 ## COG0014 Gamma-glutamyl phosphate reductase 14 8 Op 4 12/0.000 - CDS 15538 - 16548 651 ## COG1466 DNA polymerase III, delta subunit 15 8 Op 5 9/0.000 - CDS 16535 - 17068 529 ## COG2980 Rare lipoprotein B - Term 17086 - 17122 9.6 16 8 Op 6 . - CDS 17135 - 19768 3219 ## COG0495 Leucyl-tRNA synthetase - Prom 19795 - 19854 1.8 + Prom 20070 - 20129 3.9 17 9 Op 1 . + CDS 20282 - 21499 125 ## gi|302859231|gb|EFL82313.1| hypothetical protein HMPREF0189_01554 18 9 Op 2 . + CDS 21519 - 22307 187 ## gi|302859232|gb|EFL82314.1| hypothetical protein HMPREF0189_01555 + Term 22508 - 22567 3.2 + Prom 22770 - 22829 4.5 19 10 Op 1 . + CDS 23069 - 23206 61 ## gi|302859233|gb|EFL82315.1| hypothetical protein HMPREF0189_01556 20 10 Op 2 . + CDS 23224 - 24024 183 ## gi|302859234|gb|EFL82316.1| conserved hypothetical protein + Term 24161 - 24206 -0.4 + Prom 24087 - 24146 4.3 21 11 Op 1 . + CDS 24220 - 25347 29 ## gi|302859235|gb|EFL82317.1| N- HKD family nuclease fused to DNA/RNA + Term 25389 - 25424 -0.1 + Prom 25350 - 25409 3.8 22 11 Op 2 . + CDS 25507 - 27852 1822 ## COG0210 Superfamily I DNA and RNA helicases + Term 27872 - 27913 8.1 + Prom 28272 - 28331 9.7 23 12 Tu 1 . + CDS 28530 - 28916 415 ## COG0853 Aspartate 1-decarboxylase + Term 28956 - 29003 6.0 - Term 28864 - 28905 1.6 24 13 Tu 1 . - CDS 28932 - 30095 707 ## COG3177 Uncharacterized conserved protein - Prom 30207 - 30266 6.2 - Term 30878 - 30921 10.8 25 14 Tu 1 . - CDS 30942 - 32156 1266 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Term 32749 - 32785 2.2 26 15 Tu 1 . - CDS 32808 - 33170 513 ## CAP2UW1_4135 histone family protein nucleoid-structuring protein H-NS - Prom 33205 - 33264 10.6 + Prom 33502 - 33561 5.1 27 16 Tu 1 . + CDS 33670 - 36522 2550 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 36530 - 36561 2.4 - Term 36518 - 36549 2.4 28 17 Tu 1 . - CDS 36587 - 37003 497 ## gi|302859242|gb|EFL82324.1| glycoprotein/polysaccharide metabolism - Term 37041 - 37073 5.0 29 18 Op 1 . - CDS 37093 - 37872 862 ## Bphy_4411 putative transmembrane protein 30 18 Op 2 . - CDS 37890 - 38864 951 ## COG2334 Putative homoserine kinase type II (protein kinase fold) 31 18 Op 3 . - CDS 38885 - 39370 470 ## gi|302859245|gb|EFL82327.1| conserved hypothetical protein - Prom 39518 - 39577 3.4 + Prom 39321 - 39380 6.2 32 19 Tu 1 . + CDS 39528 - 40370 918 ## COG2116 Formate/nitrite family of transporters + Term 40371 - 40411 -0.3 33 20 Tu 1 . - CDS 40382 - 41290 507 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily - Prom 41475 - 41534 4.8 + Prom 41419 - 41478 3.7 34 21 Op 1 . + CDS 41519 - 43504 1920 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 35 21 Op 2 . + CDS 43522 - 45315 1508 ## COG4624 Iron only hydrogenase large subunit, C-terminal domain - Term 45351 - 45394 0.0 36 22 Tu 1 . - CDS 45398 - 46528 1109 ## Desal_2391 hypothetical protein - Prom 46576 - 46635 2.9 - Term 46705 - 46735 2.6 37 23 Tu 1 . - CDS 46757 - 47740 1037 ## COG2768 Uncharacterized Fe-S center protein - Prom 47780 - 47839 3.1 + Prom 47917 - 47976 4.9 38 24 Op 1 . + CDS 48004 - 49701 1401 ## COG2195 Di- and tripeptidases 39 24 Op 2 . + CDS 49712 - 50113 390 ## gi|302859253|gb|EFL82335.1| peptidase M20 + Term 50135 - 50173 8.6 + Prom 50151 - 50210 2.2 40 25 Op 1 . + CDS 50240 - 50935 634 ## COG0603 Predicted PP-loop superfamily ATPase 41 25 Op 2 . + CDS 50932 - 51807 761 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 42 25 Op 3 . + CDS 51888 - 53453 1990 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 53487 - 53525 3.9 + Prom 53515 - 53574 5.1 43 26 Op 1 . + CDS 53594 - 54013 403 ## Shewana3_1805 MerR family transcriptional regulator 44 26 Op 2 . + CDS 54006 - 56234 702 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain + Term 56261 - 56298 6.1 + Prom 56312 - 56371 3.8 45 27 Op 1 . + CDS 56391 - 56684 138 ## gi|302859259|gb|EFL82341.1| putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein 46 27 Op 2 . + CDS 56674 - 57024 303 ## gi|302859260|gb|EFL82342.1| putative ABC transporter, permease protein, FecCD family 47 28 Tu 1 . - CDS 57055 - 57639 276 ## COG1280 Putative threonine efflux protein - Prom 57804 - 57863 2.9 + Prom 57636 - 57695 3.3 48 29 Tu 1 . + CDS 57729 - 57977 268 ## BDI_3315 hypothetical protein + Term 58036 - 58068 -0.1 + Prom 58199 - 58258 8.1 49 30 Tu 1 . + CDS 58428 - 58682 91 ## + Prom 58733 - 58792 2.9 50 31 Tu 1 . + CDS 58825 - 59661 773 ## Cphamn1_2546 hypothetical protein + Term 59737 - 59772 1.1 - Term 59666 - 59703 2.2 51 32 Op 1 3/0.000 - CDS 59762 - 60166 170 ## PROTEIN SUPPORTED gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes 52 32 Op 2 . - CDS 60169 - 63180 1432 ## COG1061 DNA or RNA helicases of superfamily II - Prom 63204 - 63263 5.7 + Prom 63113 - 63172 4.3 53 33 Tu 1 . + CDS 63365 - 63646 224 ## gi|302859267|gb|EFL82349.1| conserved hypothetical protein + Prom 63707 - 63766 5.9 54 34 Tu 1 . + CDS 63789 - 64064 276 ## gi|302859268|gb|EFL82350.1| putative copper ion binding-like protein + Term 64106 - 64152 -0.4 - Term 64199 - 64245 -0.9 55 35 Op 1 . - CDS 64264 - 64620 193 ## gi|302859269|gb|EFL82351.1| putative permease of the major facilitator family protein 56 35 Op 2 . - CDS 64622 - 65392 703 ## COG1414 Transcriptional regulator - Prom 65476 - 65535 6.7 + Prom 65460 - 65519 6.1 57 36 Op 1 . + CDS 65573 - 67072 1487 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 58 36 Op 2 . + CDS 67086 - 67421 421 ## SO_3300 cytochrome c 59 36 Op 3 1/0.000 + CDS 67435 - 68529 1110 ## COG3203 Outer membrane protein (porin) + Term 68555 - 68602 9.5 + Prom 68584 - 68643 2.6 60 36 Op 4 . + CDS 68690 - 69631 488 ## COG0583 Transcriptional regulator + Prom 69634 - 69693 4.2 61 37 Op 1 . + CDS 69755 - 70228 477 ## COG2954 Uncharacterized protein conserved in bacteria 62 37 Op 2 . + CDS 70237 - 70875 641 ## Ddes_1850 hypothetical protein 63 37 Op 3 . + CDS 70929 - 72449 1205 ## COG0471 Di- and tricarboxylate transporters + Term 72466 - 72511 12.1 64 38 Tu 1 . + CDS 72545 - 73987 490 ## HRM2_45680 hypothetical protein + Term 74112 - 74149 -0.3 - Term 74066 - 74105 7.5 65 39 Op 1 . - CDS 74157 - 74567 447 ## COG0710 3-dehydroquinate dehydratase 66 39 Op 2 . - CDS 74582 - 75013 425 ## COG0710 3-dehydroquinate dehydratase - Prom 75233 - 75292 4.9 67 40 Tu 1 . - CDS 75572 - 75823 297 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349797|gb|ADCQ01000053.1| GENE 1 444 - 1319 1233 291 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 2 291 201 484 484 106 28.0 5e-23 MRVTGVKIQTPAGQEEYFSKGGVAIATGGFSANPEMVDKYIGGWATRMVLRGSKSTTGEN ISLTLPLYAKCVNMDQFHAGPIIGATHVNPADVLNSGYGIQVNTSGDRYMDENNTYVIKA RTTAQKTLDNTGWVIVDSTCPVLDKVIPKFDMLNSPYGKANTIEEVAKQAGLPPAKIVAL VKEYNDAVKNGTLGKMNPPNTYKKPHLIEKAPFYAVPLQGGMTATFGGPLINTKAEVQNL DGKTIPGLYAVGNSSGGIFFHNYAGGAQLGAATVFGRIAGKEMAQRAAAAK >gi|301349797|gb|ADCQ01000053.1| GENE 2 1333 - 1713 635 126 aa, chain + ## HITS:1 COG:no KEGG:Sputcn32_0810 NR:ns ## KEGG: Sputcn32_0810 # Name: not_defined # Def: flavocytochrome c # Organism: S.putrefaciens # Pathway: not_defined # 60 113 57 107 589 67 51.0 1e-10 MKKTLLVLASALFGMSVGLSVYAADQAPAAAAPAAQAKTLGQIHGAMWPKSKDGYVTKYQ CMQCHGDYDKLAKQTADLVPNPHHSHLGQVNCEDCHKANLSKPVLMCNQCHNFTIRKDGK PIELAK >gi|301349797|gb|ADCQ01000053.1| GENE 3 1788 - 3038 1127 416 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859217|gb|EFL82299.1| ## NR: gi|302859217|gb|EFL82299.1| hypothetical protein HMPREF0189_01540 [Burkholderiales bacterium 1_1_47] # 1 416 1 416 416 765 100.0 0 MFSSKIAAAVAVCAAVYACAYGGLVYYQGQKFQEYASDLPKYLGSEWKSVKVNITDNGFF SKEFIVLNKNAQPKDKDTVTLPGKVKFGWSPESEITIKGEGNEVFKKVVEAAQPVLKTSF NYRFIPNLFVFSSKAVETTVDGETFKIGAIQSQALPKLVKQADGSLLIENLDSSVKTDIF SLASEESNVALSNPEFKFSVKGGNLKAAALSFSVSGIDYRDSSTQFTIGKTLVSINQSQN KSEITEGIKITFDHLKVGGFLKVGIDSWNTGLTAHFPPEPLLFDFLVQEAFGTNFCTNFP LICSPEPINEAQAEEILRNGILAGKTWAAVEPSEIKVGKESLSFSGQLKKQPEGNTLGSV KFRLQTSDGGLGQFALMALPRNSYLSEGKGVYATEIVPTLTPNGDLILTANGVRLF >gi|301349797|gb|ADCQ01000053.1| GENE 4 3104 - 3880 826 258 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859218|gb|EFL82300.1| ## NR: gi|302859218|gb|EFL82300.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 258 1 258 258 523 100.0 1e-147 MRVLAASLLVAATLLQGCTLLGIASTTASISSPKHGWFDVNAKLVEKSELRRPAVPLNLT LHLRVIVQGIDTGKEGTLEDSFEWLFADETRKEMVDLLEKNGIALITDRGLDGAVYIEIS DTMEDIGMRYLPIIPTVRWTERKIGKMRITFINSANHKVSSTLTEENVFIQSGLLSDSPQ SEYKKKPFELSRWDYTIKGDGIGLHELNEQLFYQCMKKIQDKVSLEEFFGVPDDSSDEPN APDPAEGWHNNTGGELVD >gi|301349797|gb|ADCQ01000053.1| GENE 5 4543 - 5952 1814 469 aa, chain + ## HITS:1 COG:CAC1590 KEGG:ns NR:ns ## COG: CAC1590 COG0471 # Protein_GI_number: 15894868 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Clostridium acetobutylicum # 9 469 18 476 476 405 48.0 1e-113 MSKSLRNWIIVLAIGFVIWVCPTPQGLTPNAWHLFAVFAATIAGFILQPISMGAVAFIAL TFCAITGVLKTGQALMGFGNGTIWLIVCAFFLSRAFIKTGFGRRIAFLIIKYIGRSSLTL GYSIALSELIVSPAMPSATARGGGVFYPIVQSLANAFGSQPGPTAGKIGKYLMQVGYHTD AVTCTMFLTSMAGNPLCVGLAATAVGVEITWMNWAVAAIVPGLISLFLVPVLMLKLSPPE IRDIPDARDLAVNELEKMGPMSLQEKVLAFVFVMCLALWATGSWTKLGATPVAMLAVAIM LIAKVLDWKDILSEKGAWDAMFWMGGLVALATALAKSGFIAWIAKLIGTAVAAANMGWIA SFVLISLIYIYSHYCFASVTARISAMYAAFVAVAAACGVPAMLVAITFGCFANLPISLTH YGNGCGPVYFGAGYVSQGEWWRNGFIITTINVVIWLTIGMAWWKFIGLY >gi|301349797|gb|ADCQ01000053.1| GENE 6 6394 - 7602 1354 402 aa, chain + ## HITS:1 COG:TM0138 KEGG:ns NR:ns ## COG: TM0138 COG0133 # Protein_GI_number: 15642912 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Thermotoga maritima # 13 398 2 385 389 457 60.0 1e-128 MNLYKSILPVDERGFYGEFGGSFVPPELQKNIDELQEAYLRYVDDPEFQKEFNDLLRDYV GRPSPLYFAPRLSEKYGTNVYLKREDLNHTGAHKINNAIGQALLAKRMGKKRIIAETGAG QHGVATATVCALMGLECSVYMGELDIQRQRPNVERMKMLGAKVIPAISGSKTLNDAVNEA LEAWMKDPENFYLIGSAVGPQPYPEMVARFQSVISEEIKKQLKERTGKENPDYVVACLGG GSNAAGAFYHFINEPAVRLIAAEAAGKGVDSGETAATLTIGEKGVLHGSQTLLMKDEQGK VKEAYSLSAGLDYPGIGPLHAHLAKTGRMEVEAVTDDEALKAAFMLTREEGIIPALESSH ALAVLEKRKFGKDDVVVINISGRGDKDLDNYLNSPFAQGNQE >gi|301349797|gb|ADCQ01000053.1| GENE 7 8097 - 10022 2452 641 aa, chain + ## HITS:1 COG:RSc1715 KEGG:ns NR:ns ## COG: RSc1715 COG0760 # Protein_GI_number: 17546434 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 1 627 1 630 648 333 34.0 6e-91 MFQSFRNQKRWLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQKR EYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIKN ADAFKKDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVALL NDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPETV KMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKILA EVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPEFDKAVFGAKKDEIVGPVKTE FGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDSLDPA VEKYGLTLHTLDGLTQSGLPKTSPDAQYITKRVIEDLFSPDCLQEKRNTQAVEVAANTLV SARIVKHTPAHIKSFDEVKGEIKDQLELEQASALAKKAGEAKLAELKAKKDLEGFGHELT VSRINPQSQSMPLIQAEMAVPAKSLPAFTGTTVPDGAYVISYVESSKMPAADDSQVDEIR GEALTSQSRADEASFYEGLKKLYKMEILKKEYEYQAPTVMK >gi|301349797|gb|ADCQ01000053.1| GENE 8 10111 - 10611 217 166 aa, chain + ## HITS:1 COG:MA0854 KEGG:ns NR:ns ## COG: MA0854 COG0454 # Protein_GI_number: 20089738 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Methanosarcina acetivorans str.C2A # 9 148 29 166 186 68 32.0 7e-12 MEIFDVPGLTLRHELKAGDLGRLIEFSGIYGHSNFDYPIAFEGYVAETFAEFVINPKPLN RLWMVEDEQGLVGTIGVVDRGDTAQLRWFSVRPDWRENNLGKFLFGAAMEYIQENDFQKA WLSTFSESEIAIAFYKRRGFRIMVETDVEIGGKNYHEIVMEKSFLT >gi|301349797|gb|ADCQ01000053.1| GENE 9 10731 - 10913 172 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859223|gb|EFL82305.1| ## NR: gi|302859223|gb|EFL82305.1| hypothetical protein HMPREF0189_01546 [Burkholderiales bacterium 1_1_47] # 1 60 1 60 60 76 100.0 6e-13 MVDFITYLWVAFSLVIFCWLIYLFARKRIGKVTFVCFLIFVVAGAAGLTGWLQVAFQATV >gi|301349797|gb|ADCQ01000053.1| GENE 10 11041 - 11769 406 242 aa, chain + ## HITS:1 COG:CC0445 KEGG:ns NR:ns ## COG: CC0445 COG2188 # Protein_GI_number: 16124700 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 28 234 42 239 247 64 29.0 1e-10 MQKKIWHKVAEEISLQVSLGKWPVGSIIPGEIELAKQFNVSRDTMRKALAYLSQQGLFER KAHVGTRVKARTRIGRFLNEYNDIRGIDHYGNLYPRHIQNVERLVLNEETADRLGLIPGE EVIRFKNIRVASERHPEAVVVTYVYIYPNALEVLDLIKKRSDDLIITLAEEVTGQECVEV KQAFSATTMPKEVSDIFHVPANSPSLRIIRNYYDSRGLSIVASESFHMAERFSFSVRSVK RS >gi|301349797|gb|ADCQ01000053.1| GENE 11 11818 - 12924 1570 368 aa, chain - ## HITS:1 COG:BS_amhX KEGG:ns NR:ns ## COG: BS_amhX COG1473 # Protein_GI_number: 16077370 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus subtilis # 15 359 19 363 389 212 35.0 1e-54 MDTKDFDVVAMRTDLHQIPELGFNEHKTSDYVAAKLKEMGLEPIRGIGGTGVVAYIDGTE PGPTVMLRADMDALPFVIDGKDACIHACGHDSHTAMVLATAAKLIGHVKKGRVKLFFQPA EETLFGALKSYDDGVLDDVDYAFGAHVRPIQDIPDGTVCAAVRHTSSTFCIVELKGKVAH GSRPHLGASVVEAAVLATNAVNSLWVNPNKAWSAKVTSIDCASTATNIIPDKGKMILDIR AQDNETMTELLEKLKTAITNACACVNVTCEITFPGGVIPAAVYDEDLVDQVRKTIGEVLG EEKVAKDCGGGGEDFHYFKQKKPELHAAYIGVGTGVTPGLHDPRMTMNPESLRNGVKVLE KLILNVVG >gi|301349797|gb|ADCQ01000053.1| GENE 12 12961 - 14166 1089 401 aa, chain - ## HITS:1 COG:NMB0455 KEGG:ns NR:ns ## COG: NMB0455 COG0116 # Protein_GI_number: 15676366 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Neisseria meningitidis MC58 # 1 389 1 380 380 312 45.0 6e-85 MNTLLKPFYAVVPLSLEELFAEELKKLGIEKFRLEKGGCWFGAEMSQMMQVNLWTRYASR ILLKVAEGPYRTEEDIYKLAKSFRWEQYFTPKNTFKIELSSRRSPLKSVAFTALRVKDAV CDYFRETDGQRPDVEKHDPDIRIYVHLTDKSCIIYLDTSGESLFKRGWREAKGEAPLKEN LAAGLLGLAGWTPDKPLQDPFCGSGTIIIEAATIACNMAPGLNRRFGFERFRGFDSTAWQ RIKKEARMAVNFDVPVNLAGSDISTLIVDRAQKNAVLAGISQWVNEGKVRFSACDAREVQ PSSETPGLIVTNPPYGEQSNPKSASVASMMKNVADNLKRNFAGWAVWMLTSDRELPRQMR LKESKKIVFFNGPLECRFFRFVMTAGSNRKEDVSQKETSSD >gi|301349797|gb|ADCQ01000053.1| GENE 13 14245 - 15531 1489 428 aa, chain - ## HITS:1 COG:RSc2741 KEGG:ns NR:ns ## COG: RSc2741 COG0014 # Protein_GI_number: 17547460 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Ralstonia solanacearum # 11 427 7 425 426 505 61.0 1e-143 MVFTNVSQTAHDKIAVIGKKARAASLIMAKASSKQKNNVLLTLTDLLGKNLEDLLKANNL DIVEAEKNGLSKAFIDRLTISVDTVAQMAAGLRQIASLRDPIGEITDVRPQPSGIEVGKM RVPLGVVAIIYESRPNVTIDAAALCLKSGNAAVLRGGSDAKHSNAFLAGLIQQALSENSI TSDAVQIITDPDRDLVGELITAREYIDVLIPRGGKGLISRLMQEATVPMIKHLEGICHTY VDESADIDMAVAVCDNAKTQRYSPCNAMETLLVNRKIAGTFLPKIGAIYFKKGVELRCDQ ASKAILENFGPVKDVTETDWSEEYNAPVLSIKVVDALEEAIDHINTYGSHHTDAIITNNL EHSERFLREVDSSSVMLNTSTRFADGFEYGLGAEIGISTDKIHARGPVGLEGLTSQKYVV FGHGELRK >gi|301349797|gb|ADCQ01000053.1| GENE 14 15538 - 16548 651 336 aa, chain - ## HITS:1 COG:PA3989 KEGG:ns NR:ns ## COG: PA3989 COG1466 # Protein_GI_number: 15599184 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Pseudomonas aeruginosa # 17 310 14 318 345 155 34.0 9e-38 MSWSSLLAQKLRPDENGNLPRLWFLLGSEPLLAIEAQDAIRAAAFKAGYSERKSFVFEGN ADYSPLYEALGDQSLFGEKNLIEVVFPRATIGKNGPAAVEAVIEHADEDKMVVVSLFDYD WTATKKDWFNHLMKSSVCIRTDPIDRNAVPRWITERAKEKNGQTLTPEAANLIAERTEGN LLATSQEIQKLALLVNKPEIDVSDVLDAVSDVSRFDQESLFLAMLEGDARQVSKIIDSLQ GENVQIPSFLWMLTDVVRNLLLLNRGFAVRTFGLSEAHRSALNRASRRANPKLLELMLHR LSDVDRMSKGLFVESSDGDAWQELKAVCLMLSLKRK >gi|301349797|gb|ADCQ01000053.1| GENE 15 16535 - 17068 529 177 aa, chain - ## HITS:1 COG:RSc2743 KEGG:ns NR:ns ## COG: RSc2743 COG2980 # Protein_GI_number: 17547462 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rare lipoprotein B # Organism: Ralstonia solanacearum # 23 164 24 165 169 79 28.0 2e-15 MNYIGLTRRSFILGLSALGLSGCGWHLRGKQNVPFKTIYIALGENSAVRATIRRNLEAQT EVKVVNDRKEAEAIFELLGQSRGSNVLAYNSDGRARIYSLRLTNTFRVVLQNGVELLPTT TVSATRELIRDESDENGRANQERLLYEEMEQSCIHQMVNRMTHISEEAVQKGMHELE >gi|301349797|gb|ADCQ01000053.1| GENE 16 17135 - 19768 3219 877 aa, chain - ## HITS:1 COG:RSc2744 KEGG:ns NR:ns ## COG: RSc2744 COG0495 # Protein_GI_number: 17547463 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 876 1 876 877 1153 63.0 0 MRETYDPAEVESVQQAHWRAKDIYRAVEHALDANGKEKPKFYVCPMLPYPSGKLHMGHVR NYTLNDVLYRYLRMRGMNVMTPMGWDSFGLPAENAAIAKKVAPAKWTYDNIADMKAQMEP LGLAFDWSREVTTCKPDYYRWNQWMFLKMLEKGVAYRKTQTVNWDPVDHTVLANEQVIEG RGWRSGAIVEKREIPGYYLGITQYAEELLKDLDQLQGWPEQVRRMQEHWIGKSYGVNLAF PYELDGEKKELRVYTTRPDTIMGVTFAAIAAEHPLALRLAKDKPELQAFIDECRKGSVSE ADMATMEKKGVPTGFCVKHPLTGADVPVWIGNYVLMTYGEGAVMGVPAHDERDFAFALKY GLPIKQVIGKKGEVFDDKVWHEWYGEKEGTFCVNSGKYDGMDFEQARDAVAKDLEALGLG KLQVQYRLRDWSISRQRYWGTPIPMINCPHCGPVPVPEKDLPVILPEDLIPDGSGNPLNQ DEAFLNCKCPKCGGDAKRETDTMDTFVDSSWYYMRYCSPDCETSMVDERNDYWMAMDQYI GGIEHAVLHLLYARFWTKVMRDLGLVKFDEPFKRLFTQGMLTAECFYRELPDGRKRWFYP SELDIVYDAKGRIEKITAKEDGLPVKSGGIEKMSKSKNNVVEPSAIIGKFGADTARAFVM FAGPPDQSAAWSNSGAEGTFRFMRRLWNFGFTHQDVIKENVKLDVAKLNHEEKAVRRDIY TALKQAEFDLDRMQYNTVVSAAMKMLNSLDTLKDNTSEGTRAVINEGMSILLRTLYPIAP HITAQLFEDLGYDQRFGTSIVDAPWPKIDAQAMVADEVKYVIQINGKLRGEINVPAETPK SEIEAAALANPDAQRFIDGKPVRKIIVVPKKLVNIVV >gi|301349797|gb|ADCQ01000053.1| GENE 17 20282 - 21499 125 405 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859231|gb|EFL82313.1| ## NR: gi|302859231|gb|EFL82313.1| hypothetical protein HMPREF0189_01554 [Burkholderiales bacterium 1_1_47] # 1 405 1 405 405 756 100.0 0 MVSSCEVLFQEKLVCWYSIYKALHHQVLSKKATDPELKLTHTMRANAYLSNICASGDGEK FLKDLEAVIIQTFDGVGRHYYVYLEDPFEQEEIPEELHCLNSCYCALISRKNFLQERDKR KNDKNYIKSVQYLDEAVSCSDCFYTLACLKKALEDFSSKINSLPYGCDSLYSYSAFKADR SEPYPFCRAFDELLEEDFDIHNGFRRIEGCKKKSKEFQKDKNSKEETLDLFLSRTFSTPT IPKHISIFEDSLDLPMDSGQGDDMEDLFPVTPEGEDESEGPVLEVCSSEDFTIEVETEKE EQTHRQDGSLNDVDIVSFSIRENRCITPARREDKKQENSREFEEKIDEKLKVLANVSVKS REAANQSELFKDGFGDNKENSQFSRSTYDRDVPKRLYEVLRTILT >gi|301349797|gb|ADCQ01000053.1| GENE 18 21519 - 22307 187 262 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859232|gb|EFL82314.1| ## NR: gi|302859232|gb|EFL82314.1| hypothetical protein HMPREF0189_01555 [Burkholderiales bacterium 1_1_47] # 1 262 1 262 262 506 100.0 1e-142 MKNVVKQKKFCEILLPLPFVKASDEGKTVLDLTINPHILMAAGDLKQLRFLFDYCERFFN GLSMAVCVTKISKYDGIQEEYGFNLTTRGTYDLRNPLKVKDFYESMSDRLEEMKKFNVRD FCDLKFKRKSLQNYLSPQDKRSPANLEEFEKFIRNGKIQIILVEKGTSFLECYDPLYKDF LLKIIQNGRRAGYFVIVGETEEGLGKLDPLIKINLTTRLSYGIKEKELSKVFHFHQTLKN YDRESIYMERIGEYPFKVYSSL >gi|301349797|gb|ADCQ01000053.1| GENE 19 23069 - 23206 61 45 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859233|gb|EFL82315.1| ## NR: gi|302859233|gb|EFL82315.1| hypothetical protein HMPREF0189_01556 [Burkholderiales bacterium 1_1_47] # 1 45 218 262 262 92 97.0 9e-18 MEKDVCLGDGRKMMYEEIMSNPLFEIVLRTAQLTDFTVLFDYKKE >gi|301349797|gb|ADCQ01000053.1| GENE 20 23224 - 24024 183 266 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859234|gb|EFL82316.1| ## NR: gi|302859234|gb|EFL82316.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 266 7 272 272 511 100.0 1e-143 MNTTDKNLKIPGGFTLLPDGEAVVDPQAKRCGLNRFKYYSQRCATAFLFFSNRQYKDQTA EVAFAISKKTFAPQIAFFSFTCEEGIGLFLYDWLLDGGKNVYLRGDGKGDFEVLVEPYHG YFLFYYSLLFANFGKLKQIIYNEPFEDFYLINSNMNAKKSFGRKKSRLLTRKEVDLFDGT ENEFLKRLLRVNEDVDFEIGDTFITPSTDDPYDLYEMNQDLRQALHIGTTKPRTYKEISS RVFFKKLKKTEGMRDFKVMFDYRKSK >gi|301349797|gb|ADCQ01000053.1| GENE 21 24220 - 25347 29 375 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859235|gb|EFL82317.1| ## NR: gi|302859235|gb|EFL82317.1| N- HKD family nuclease fused to DNA/RNA [Burkholderiales bacterium 1_1_47] # 1 375 52 426 426 744 100.0 0 MEELRPSINGVFLRIISGINFGGTDPEIFELGKREWKEYKGCFEIKIPNAELYEKIFHPK LYIFYDEVGGTRVLIGSMNFTKAGLLQNKELLVELKGKNEKLVNWFEETWKNSHEITLEE RDRLGAQFAGNKLVNDGRDPDSTDMEDVGNWLMERKYLTDWKKYKDSLQKAAPNFNNFSR ETILGDPRNDPWSNLFSLTAELLSSRRWKPVYGNVLAGNVFPYKFLGSLQARGGLCSVLV KDRNLEERKKIIKILKSFKEVNVDGLSVDEKADVVISFLKELDSLPEIGVASASRFLAIT RPDLAFSYNGGSVRKLNLLGKLKGDYPTVKNYQKLLRLFYSTEWYNSKPPKAQTKERQIW NSRLALIDILVYEPE >gi|301349797|gb|ADCQ01000053.1| GENE 22 25507 - 27852 1822 781 aa, chain + ## HITS:1 COG:RSc2235 KEGG:ns NR:ns ## COG: RSc2235 COG0210 # Protein_GI_number: 17546954 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Ralstonia solanacearum # 1 774 36 823 829 746 51.0 0 MQSITESLNKQQAQAVTAEPKSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTF TNKAAKEMLARLQNMIPINPRAMWVGTFHGLCNRLLRLHHQEAGLPSTFAILDMSDQLGV IKRVMKANGIDTEEFKPREVQNFINRCKEEGKRASEVYSKFSKDKAYIQIYAMYEAVLQR EGACDFAELLLRAYELLSRNEMIRHHYQERFRFILVDEFQDTNVLQYEWLKLLAGLGEKN PPNAVFAVGDDDQSIYAFRGANVGNMMSFVQEFRIGEPIRLEQNYRSQGNILDAANALIS NNSERMGKNLWTDAGKGEKIRANRSDNDFDEARFVCSTIQEYIDKGVSPEDIAILYRSNA QSRLFETELTRRGIPFMVYGGLRFFDRAEIKNAMAYMRLAENPSDDSAFLRVVNVPARGI GAKSIENLVDFATTNGISLFESMQYIRGAAANKFAAFKEIIDTLRVAKDEMPLPAFVDFT VEKSGLRNMYELDPNGSERIENLQELTSAAQGFIKEEAIDTENSDGTAVENLSALAGFVS HASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDMFPHFRSKNDKKALQEER RLMYVAITRARKELYLTLAEERMLQGRSFSSYPSSFLTEIPGETLKWLSRNPFESRYEAE DEDSWGSRSGSNKNYSSSYRNSSCGGSTKPSGHRFASNVPEWAKGIIETKKEKLQTQKIR AKQNSDSPYKAGININHEKFGPGVILDTQGAGDDMVLIVKFKTGGIKNLLARIAGKKITI L >gi|301349797|gb|ADCQ01000053.1| GENE 23 28530 - 28916 415 128 aa, chain + ## HITS:1 COG:CAC2916 KEGG:ns NR:ns ## COG: CAC2916 COG0853 # Protein_GI_number: 15896169 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Clostridium acetobutylicum # 1 127 1 126 127 145 59.0 2e-35 MLLTILKSKIHRAKVTQADLNYVGSITIDEELLRQSGINEYEQVDVVDINNGNRLTTYAI SGKPGSGIICLNGAAARLVSEGDLVIIMSYAQMTREELKEHKPTVVFVDPDTNAVTSVEH QEVHGEIR >gi|301349797|gb|ADCQ01000053.1| GENE 24 28932 - 30095 707 387 aa, chain - ## HITS:1 COG:NMA1635 KEGG:ns NR:ns ## COG: NMA1635 COG3177 # Protein_GI_number: 15794529 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis Z2491 # 4 346 20 367 375 106 26.0 1e-22 MDSEGLEDLAVLKSCLKVIRELSGFRYAFAKDAMAETFAPLMASVEAKNELERQGLKVSL KSYFLSLILKDLENPDIVTIDNYINALFNCADAAANGPITVQTVVNVANSFPQDGINWRQ NPQTEEEQILLQPDTFPDSKAVQVELARWEKYSKELRDLDPLVHALLTNLYFMAISPLNR HNGRVTQILLQLSLMGQNINSPAPCLMLGRALMTNAHFGIEERLYGLRTRQWSPYLQYML KTLSKAILLSGDLLASLQRLYAQTEAYLKMIGLASHAAFLPVIFKHPACRTGEFSSIFTT RRQVASHILNDLARAGILERVEDGRDRVFYHTRLIELLESENYSFSPLPASIDPFVPLYQ KGTPGRTKREPLPTREDALPKFSVTGD >gi|301349797|gb|ADCQ01000053.1| GENE 25 30942 - 32156 1266 404 aa, chain - ## HITS:1 COG:AGl2386 KEGG:ns NR:ns ## COG: AGl2386 COG1473 # Protein_GI_number: 15891305 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 398 56 428 430 282 39.0 8e-76 MIEPVAKDKCLPELVALFPELVAHRHDIHQHPDCGFETQRTIGKIKEFLEKHNVSPKDMD DTTCPGSLFVEIKGNQPGKTIGFRADIDALKMKDLSGKEWSSQIDGQAHACGHDGHQTWL MGAAAYMAEHRDFPGTLVCVFQGAEEIGKGAESVVQSGFLDKYKVKEMYGAHDEPFLKKG QIGFKVGHLQAASDTFAVKFIGAGTHGGRPHQGADPIPALSEMYLAMQTIVSRKVDPLES AVVSVCFMNAGTFGTFNVLPGEAVMGGTVRTFLPEVRDLVENTIKRMAEGIAMAHGLKAE VSYERLISSVNNDERLTKEGVRIAQDLLGKDKIFPDFKPFMSSEDFSVYQEKVPATICRI GIADENHTVPLHNPKFDFNDEVLPLASTLFVKIAQARLKALSEE >gi|301349797|gb|ADCQ01000053.1| GENE 26 32808 - 33170 513 120 aa, chain - ## HITS:1 COG:no KEGG:CAP2UW1_4135 NR:ns ## KEGG: CAP2UW1_4135 # Name: not_defined # Def: histone family protein nucleoid-structuring protein H-NS # Organism: A.phosphatis # Pathway: not_defined # 1 98 1 106 106 65 35.0 5e-10 MATLEDLIRQKQELEKEIEEVTRRERINAINTCRELIQKFDLQPAEIGLKKLMRKGAMIP KFMGPKGETWTGRGRKPIWLQQAELEGKSLEDFRITSPVAMEEDEEARLEELTRPDNVKA >gi|301349797|gb|ADCQ01000053.1| GENE 27 33670 - 36522 2550 950 aa, chain + ## HITS:1 COG:RSc2230_2 KEGG:ns NR:ns ## COG: RSc2230_2 COG0749 # Protein_GI_number: 17546949 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Ralstonia solanacearum # 390 950 80 651 651 590 53.0 1e-168 MFGAPVVVREKDLILKKTLLLIDGSNFIFRAYHALPPLSTSTGTPTNAIRGFLSMLRVLM KDVPTDYVACVVDPKGKTFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIP GIEADDTIGTLTKKAVAEGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKK FGVPPEKIIDFLALMGDKIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGKIGEN LRSALGFLPIARQLVTIKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKELK KTDVPGEVKPLETSTTAQKRAAVGAAPVEGDTLDLFSQEQESETERTLEIITDKAKAKEL AAHLEDLVTKDGFEFYVLADGSSQQEYMPVGVAFGTTDGKTSYVPIDNDVLLAQGLTLGT FKEIFGRVLEHKKPIKCGYDTKYMKHVFANVGINLAGVSDDVMLESYVLEAHRSHTIEKL AANWLKYELRGEEELLGKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAK LEKIYRDIEMPLSDVLFKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAGENFKLS SPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEEVLSELAENYPLAKIALEYRTITKLV TTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVREAFISAS GCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIA KVINFGLMYGMSPFGLAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVET TFGRRLWLPEIHAGGARRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLIL QIHDELIMEVPEAEVDLVKENLPKIMDSVTELHVPLIAEVGVGDNWEAAH >gi|301349797|gb|ADCQ01000053.1| GENE 28 36587 - 37003 497 138 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859242|gb|EFL82324.1| ## NR: gi|302859242|gb|EFL82324.1| glycoprotein/polysaccharide metabolism [Burkholderiales bacterium 1_1_47] # 1 138 1 138 138 269 100.0 4e-71 MRNLILCLALGAVASSAFALTNEDLAANTWMPLEEQTKSSCELPAMIDFHKDGTLSSEPG CNNMSGRYKIGEDGKIDFSEMAMTQRMCAKEYMDQEMRFTTMLNATHYIKKDDKQLILLD GDKKEVGRLVPEKAKACN >gi|301349797|gb|ADCQ01000053.1| GENE 29 37093 - 37872 862 259 aa, chain - ## HITS:1 COG:no KEGG:Bphy_4411 NR:ns ## KEGG: Bphy_4411 # Name: not_defined # Def: putative transmembrane protein # Organism: B.phymatum # Pathway: not_defined # 1 256 1 257 271 79 25.0 1e-13 MENYHLPFKTGMDWLRGACVVVKRAPATVFGILGCYVLALFVANLPSELLGLSWLGAILS SLVTPFGALAFAACGRELARNSRPTLFSCFGEGWNDMDTRNKLILLGLIYGLCVIVIGLI VSLLTSGDIAQWKNAQGQIDPQSVLSHIPWLGFIVGAVLYAMLLGITCFSPMLIAWKKQP IGKAFFFSLVVCFRNIGAIACLGLLLFLLASGGAVAFGALGDLGQILVILWALFVTGLSY SSLYPMWRSIFESEVPPLH >gi|301349797|gb|ADCQ01000053.1| GENE 30 37890 - 38864 951 324 aa, chain - ## HITS:1 COG:RSc2233 KEGG:ns NR:ns ## COG: RSc2233 COG2334 # Protein_GI_number: 17546952 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Ralstonia solanacearum # 1 322 1 330 334 298 44.0 1e-80 MAVFTEVSNTQLDELLSHYDIGQARSLKGIASGIENSNFYLDTDKGKYVLTIFERLNKDQ LPYYLELTSHLGKKCLAVSYPIPRKDGGLLSEINGKPCSIAPCLSGTYVEKPSAKACREM GEMLAKMHNAVEDFPLSQENTKGSAFWLSSMPLLKPYIPDRLYQMLEEEVTRQLELQKSP EYQALPAGAVHADLFRNNALINKNGDDESLAGVIDFYFACNAPFLYDLAVTLNDWTIDLE TGEFEPERAQAMLEGYNSVRPLTEEDHKLWQDILSAAALRFWVSRLYDYYMPRPASLLTP HDPAHFERILKLRRESAPEDLPWI >gi|301349797|gb|ADCQ01000053.1| GENE 31 38885 - 39370 470 161 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859245|gb|EFL82327.1| ## NR: gi|302859245|gb|EFL82327.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 161 1 161 161 248 100.0 9e-65 MKKIQLAAFIAAAGLMLGSAYAAGLDAPVPPSFNDAPDNIQRPSKSGETIEEKVTDLNQK NPDIVNSKAGKKDTKAEEAQSKKDLKAAQKRSKDPSLWPKTKIEETVDNHNQVTEVKVTP MSTQVPYVMTREAPSNKTGGSGPGTGSDNTMSIPKFINFGF >gi|301349797|gb|ADCQ01000053.1| GENE 32 39528 - 40370 918 280 aa, chain + ## HITS:1 COG:BS_yrhG KEGG:ns NR:ns ## COG: BS_yrhG COG2116 # Protein_GI_number: 16079774 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Bacillus subtilis # 1 279 1 255 266 160 38.0 2e-39 MATLTSQEILNATVSMGLSKANQCWIARAANTLLAGMYIAIGGFLAIRIGLALPWEQWGG MSKLIFGAVFPLGLMLVVLCGADLFTGSCMTLTTAQAKQKITFGQTAFTLATSWIGNFAG ALFVAFFIAYLSGLIFESAGGTMPWAAAVVNLANAKCSLGFTEALLRGIGCNWLVCLAVF AAAASTETIGKIAALWFPTMAFVALGMEHCIANMFFIPLGILTGTDPRYIALAEAGKAAA LKADFYSFVAGNLVPVTIGNIIGGSVLVGMLYLAANIKKA >gi|301349797|gb|ADCQ01000053.1| GENE 33 40382 - 41290 507 302 aa, chain - ## HITS:1 COG:BMEI0908 KEGG:ns NR:ns ## COG: BMEI0908 COG1752 # Protein_GI_number: 17987191 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Brucella melitensis # 2 297 34 307 314 183 36.0 3e-46 MKVGLALGSGSARGFSHIGIIDCLLDQGIVPDVVAGTSIGAIVGACYVSGHLERLRKQAL AINRLNWTTFFNPSFSIDGWINLHQMQMFLVKSGVERKQKCIEDLKTPFGTVTCDLMSGK EIWITKGPVFDSVWPSMAMPGVFPPVEGPEGRWYIDGGIVNPVPVSLCRALGADVVIAVN LNNDLLRRVEIEKQSKGSNRKKTSEVAKIFAKAKNLIPSIKKEAESDKPKPPDFFETISR SINIAQDRITKTRLAGDPPEIILCPKVTDIGLLETYRAEEAIRAGYKCCEANIAAIKDAI GH >gi|301349797|gb|ADCQ01000053.1| GENE 34 41519 - 43504 1920 661 aa, chain + ## HITS:1 COG:aq_2064 KEGG:ns NR:ns ## COG: aq_2064 COG0493 # Protein_GI_number: 15607032 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Aquifex aeolicus # 160 567 54 468 476 250 38.0 7e-66 MRLHYGVWDGVVYDNRGTADYKEPEGLDLKNLLQFNNGNPVMTFISHRGFLVFHPHANLL FAMNKYYSTVKDNSCGKCTPCRSGSIIISQALEKALRGDPINWENLLDIARMMRNTSFCG VGQTSPVALIEAIKAFPGDLKLVPLPDMPWGGYEVMTAPCIEACPAHVNVPRYIDYIKAG RTDYATGVVLRHYPLVGSCGRVCVRLCEKACRRNRLEGAVDIKNLKRYCADSLGYTVDKM FEGAAAEPSEFSPRIAIIGAGPSGLTCAYHLLLKGYKVEVFEAQRKAGGMALVGIPQYRL PKDILLAEANTIEQLGGKFHYGRRLGKDFTLDDLFNEGFNAVFIGVGCAKGMKLGFPEDN EQIEGYYNGLDFLLQVERGVVEGEAPSFSGDFVVVGGGNVAMDCSRSAVRMTDGKVHVIY RRTEAQAPADPLEIKAAKEEGIEFHFLTAQKELVLENGKVTGLRCIKLREGAPEANGRRK LIEIPGTEFVIPCSNVISAIGQRIDQSIFEQKDNILFDKRGNISVTESLATSRPGVFAGG DCATGPTTLIGGMAQGQTAAESIHEYLTRGSVGFEPRSRMTQMIKKCNLLEETEPVLPTI HQDRQQMPELAPEIRAHNFEEVELGLTPEEAKKEAERCMRCYRLFGVVTQLPIPGFNQKA Q >gi|301349797|gb|ADCQ01000053.1| GENE 35 43522 - 45315 1508 597 aa, chain + ## HITS:1 COG:TM0201_2 KEGG:ns NR:ns ## COG: TM0201_2 COG4624 # Protein_GI_number: 15642974 # Func_class: R General function prediction only # Function: Iron only hydrogenase large subunit, C-terminal domain # Organism: Thermotoga maritima # 220 580 7 365 372 308 46.0 2e-83 MRAYINNKPFDFDQEITILEAARQMGFFIPTLCAFKPLCHTPGTCAVCIVRVKRADGQEL TLTSCKTPLEDGMEVDTISSQVKKMQRTQVALIFADHDMDCVTCGRYGNCELLQLARNLG VQKAPFTGKFIAERKVDHTDPAIELDVNKCVRCMRCVEVCNKIQGIGALRIDEIGTKAGV CLNGTKDWVDSTKCVRCGQCIMVCPTGALMSTDNVDKAREILEDESVISVVQFAPSVRAT LGDAFGTLSGTNVEKRIIAGLKMMGANYVLDTNFSADVVIMEEGTELLNRIKDKHSVMPM FTSCCPGWVSFVEQHRPEMLDHLSTTRSPQAVLSSLAKTWLPEKIGAEPSKIRVISIMPC TAKKIEAGRPQLAKDGVPDTDLVLTVRELARLFKSRGIDLKEIEDGEFDTPFMSRGSGAG VIFGKSGGVAEAASRTLYHVLTGKEVNNVPFKPSNHPHVYKEADMDEGGVKLKIAVVYGL ANANKICDEVAAGTCDYNFIEVMTCPGGCVNGGGTIRFRGNYLNATSKRFEVLERADENS PVRQSHNNPMVKELYDEFLGEPNSHKAHQLLHTSYDDRSKTPAVPSIRHVWKKIQLG >gi|301349797|gb|ADCQ01000053.1| GENE 36 45398 - 46528 1109 376 aa, chain - ## HITS:1 COG:no KEGG:Desal_2391 NR:ns ## KEGG: Desal_2391 # Name: not_defined # Def: hypothetical protein # Organism: D.salexigens # Pathway: not_defined # 73 375 72 374 376 96 24.0 2e-18 MLAPVRMIVTYPLYMAMERAIFHSQTFEKTWSGLRPKLEKGVELIAQEVHPQGRNFIRRY VYQEPATRRICSECFEEMFNNEVMSLLGLVKNVRKDIRGRQKQILEWEKDLIAAPKKTWN ILNSTQSNLKDKISRYKSKIEYDEKQIVVLLDKALDSLKARGVRIDREQLESLIESAEGE DLAAILSVTDCVGQVLKRLESQLAESNPTPELSKTYAGFYMMCNRLYLEAVNRALYQIGK VYMKRVAGIEKEAFKQINTAEEKLTSPNLSEAARATLKNNVKINHEILEVVKFYTRHLNK RTKELLEIREKAALNFEISLNTFMTMKIGADLADCISNAEKDISKIFAFEPPALSALYDV GFKEQFRAVTRQIRNE >gi|301349797|gb|ADCQ01000053.1| GENE 37 46757 - 47740 1037 327 aa, chain - ## HITS:1 COG:MA0367 KEGG:ns NR:ns ## COG: MA0367 COG2768 # Protein_GI_number: 20089264 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 31 327 57 354 355 215 41.0 9e-56 MSDCCTDSCGCGKVINAPVVTPVIGSKRVEPGKYKGSAAKVFFSPIIDAEHLIKLYNLVN SEIYGKVAIKLHTGEKHGPNILPRDLVQALQATIPNSNIVETNTLYEGDRYTTESHRETI KVNGWTFCPVDIMDEDGFVNLPVNGGFHLKEVAMGKNIVNYDSMLVLTHFKGHAMGGFGG SMKNIAIGCASGQVGKRQVHGIEGEPPADWNAWPAKEKLMELMADSAKATIDHFGKRITY INVMRNMSVDCDCAGLSAAKPTIADIGILASTDLLAIDQACVDLVYSHHRDNHDLVERME SRHGLRQLTAMAEHKMGNTQYELIEID >gi|301349797|gb|ADCQ01000053.1| GENE 38 48004 - 49701 1401 565 aa, chain + ## HITS:1 COG:CC3032 KEGG:ns NR:ns ## COG: CC3032 COG2195 # Protein_GI_number: 16127262 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Caulobacter vibrioides # 223 514 116 386 412 73 26.0 1e-12 MRIRTLSLLTVMSAVSLSAIAAAPTVSTEAKKAADMINADAPMQKMLAELTSPQGQKWRF NTQMEIVRIASPSRSEMRRQQELMRRFTEEWGFSPAQVMTRTDGIIKGAGLQKVDGLPVY NACVRIPGTYSQQKDAQSYKGQFPKVLLEGHIDTVNPAELPPASAPFVPVKLQKASDALV KTKAELAALPDELHFDKDGKIIEDANYKKAYQRYNDYEDALGRGALRIYVPGYNDAMINT AAVMQAAYMLNKYKIKPVYDIWICGTTGEEGKGNLCGMKQLYGYNQDTGKGNNALNFVAN FGADSTSPGSGTVNYLGSYRFEIKYSEPAGVKVGANQPSALMAMNRAIEMISNLKTPYDL DKKAERTTYTVGVGSCSSAPEGERSKECTLLVDMRSPTPGPLKDIRSKIEPAFAKALQQE NAKYGLKEGDVKAVKMELVWFGDRPAHKRKNYDDPAMQAFWQSARTAGIDIREKLNERAA SLNDNVPAAVGVPTVNFNVGTNAGGGGGHAWYEWGIPGNGQDEGKRVYRMILMGLMAAGY HTSDGKVVPPLVSPKGNRTTDKLYE >gi|301349797|gb|ADCQ01000053.1| GENE 39 49712 - 50113 390 133 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859253|gb|EFL82335.1| ## NR: gi|302859253|gb|EFL82335.1| peptidase M20 [Burkholderiales bacterium 1_1_47] # 1 133 27 159 159 224 100.0 2e-57 MNKLLAVLICSLSASAVSAATYEVSITGPGGHSNGSYGNTNAVHAGSRAVLELEKALPCA VITDFKGGATVNAIAGDAAFKVNTAMCKTSEADNKASIEKAVKDGVDKENAFRGVKAGDL VKGFPAEIQFKIK >gi|301349797|gb|ADCQ01000053.1| GENE 40 50240 - 50935 634 231 aa, chain + ## HITS:1 COG:Ta0951 KEGG:ns NR:ns ## COG: Ta0951 COG0603 # Protein_GI_number: 16081996 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Thermoplasma acidophilum # 2 231 5 224 238 162 44.0 6e-40 MKAIVLSSGGVDSTTCLAMAVHELGKENVVTLSFEYGQRHSKELEGAQKVADFYGVKHVV FNLTQIFSFSNCSLLSNSTEKPVHESYADQIAKNGEGKVSTYVPFRNGLMLSAGAALAQS LFPEEKCEIWIGAHADDAAGNAYADCSVGFNNAMNEAINIGTYGLVSLRAPLNRWNKAQV VAKGLELKVPYELTWSCYDGGEKACGECGTCIDRKAAFEANGVKDPIEYLK >gi|301349797|gb|ADCQ01000053.1| GENE 41 50932 - 51807 761 291 aa, chain + ## HITS:1 COG:STM3796A KEGG:ns NR:ns ## COG: STM3796A COG0697 # Protein_GI_number: 16767083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 290 10 286 286 96 27.0 4e-20 MNSIALALVLFAAVLHASWNFVSKKSGGGSSFVLLYETFAFLVYMPLLYLVDFKRLLTLP VEMWLLIILSAVLHVIYTIVLQTGYRKADYSVVYPTARGTGPAFTVLVAVFLFGERLAPL GFAGIACVLLGIVLLALPGKDQELKSSLSQGLFWGVLTGVFIASYSSLDGFAIQLIGLTP LMYYVPGMAVRLLLLGPGILSKKSGRESFKEDIKKRWKYALYIGIAHPAAYLLVLFALLY APLAYVAPTREVSMMLALFIGAKALHEKVTPLKTAGVLAMMTGVILISLAR >gi|301349797|gb|ADCQ01000053.1| GENE 42 51888 - 53453 1990 521 aa, chain + ## HITS:1 COG:CAC2612 KEGG:ns NR:ns ## COG: CAC2612 COG1070 # Protein_GI_number: 15895870 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Clostridium acetobutylicum # 6 490 5 486 500 156 27.0 8e-38 MSKLYLGFDAGTQSVKVSVYDENLKSITSQSLPTILRYPHAGWVEMDLDEFLDITVRCIK RCVDDIKALGYDPKDVRAVMGDGIICGIAGVNEEGDAITPYINYLDTRTDDDVRFINDMN LDIWVKETGNPEACTMFPAMFARWFLKNNSKFQQQGVKFMHNAPYILSHLAGLKGKDAFI DWGAMSGWGLGYNVMKKEWSKEQLDILGISEKYMPRILKPWDVIGGLTKAMSEKTGLHEG TPICAGAGDTMQSMIGCGNYEAGKGVDVAGTCAMFCVSTKGIIPELSRKGNNLIFNSGSL PDTYFYWGTIRTGGLALRWFKDNVCHKANDAVYYNDLNDRAAQIPVGSNGVLFLPYLTGG QDINNKKCGCFLGLTLDDDQSVMWRSVLESIGFDYMEICDLYRSAGVDLQRLTVAEGGSR SSLWNQIKSDMLDAEVVRYKNAGGAVVTNCIFAAYAVKDVPEIIPELSKILQIDQSYQPR AENTKLYRELLNLQRKLIDVDMAPAFATLWNMKKILPQKQN >gi|301349797|gb|ADCQ01000053.1| GENE 43 53594 - 54013 403 139 aa, chain + ## HITS:1 COG:no KEGG:Shewana3_1805 NR:ns ## KEGG: Shewana3_1805 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: Shewanella_ANA3 # Pathway: not_defined # 8 124 2 123 150 90 39.0 2e-17 MSELMETKKKFSLEELSELTGISRRTIRFYIQKGLMNGPEGEKRGAYYTTEHLEDLLRIK RMTGKHIPLNEIRKADTEEERPALQVGSVTVCSHICLGAGLTLVVDHKSSELSGEKFKEF AAALCEFIEEYKNKEHENV >gi|301349797|gb|ADCQ01000053.1| GENE 44 54006 - 56234 702 742 aa, chain + ## HITS:1 COG:alr4412 KEGG:ns NR:ns ## COG: alr4412 COG2304 # Protein_GI_number: 17231904 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Nostoc sp. PCC 7120 # 10 436 25 486 820 103 23.0 9e-22 MSREKLSDSPLQKVVWQAVIDGPLMSYTSSQHYHNDSQNPIEINYSFPLPYGKSVISKFR TNINGVVREGKAYPKKEAEQKYEDAIESGDTPIMLEVTEKDFCTASLGNILPGEDASIEL EYFQLLNYCDHKLRLTIPTVIGERYASDIEEQPSGRFEITHNFFADYDLDGSVLLKGALA KAKISSPTHSIEVQKQGEDIVVRLLGAKLDKDLVLDIEAPIESAVYVAKDDSGWAAAANF ILSNEPAKLPLDLSILADCSGSMGGSRINWMKQALKKLNSKFESADQVSLTAFGSSVELK LLPNRMKFEEFQGNFADAVSYLDADLGGTELEQAIVSCMNLFPGRNKQSALLLVTDGEVW DSCKPMIMAALEAKRRIFILGIGMAPYSNLLVELAEKTGGAYEAVYNWYDIEGAVERMLK RIRSEVAVQPEIHWRAPKFWSSKKGKSFFTEDNYTGFAFLKELPESVKLSWKEDGKIKEI GAKVISHDYGYQLCQLVAAQRMLSTDIKEEKRDIGIKYNIAGPETNFFLSFVREENEKGT TNPELMIVPQMVPEDNWVLSQADPDSNNIRFNKSSRRCASRSAPSLYDASCAMPLSEIPV DETEDTTVKLLLELATKLDWSFQASDVDLYVTHAYDFLSKFEVVKREFVEFVRRIDQKLV NVSIEEALPKGYYLEGAIEEVEEKAGSLLPTFDETEDVSKLDPEAFTALCVFIFFAARGN YEEIDASFHSSLLSLIRKTIRR >gi|301349797|gb|ADCQ01000053.1| GENE 45 56391 - 56684 138 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859259|gb|EFL82341.1| ## NR: gi|302859259|gb|EFL82341.1| putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein [Burkholderiales bacterium 1_1_47] # 1 97 1 97 97 184 100.0 2e-45 MTRTLLEKCEISVSPEERTFLQLAASMTGLSLSAFIRKATISAAKDAIDKNNHYLLSGND VGELFSVIDNGFIPNKRLEEAIRLARDIEKNGASHGY >gi|301349797|gb|ADCQ01000053.1| GENE 46 56674 - 57024 303 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859260|gb|EFL82342.1| ## NR: gi|302859260|gb|EFL82342.1| putative ABC transporter, permease protein, FecCD family [Burkholderiales bacterium 1_1_47] # 1 116 5 120 120 218 100.0 1e-55 MVIENLGSPVQNGQDISCGYEFSENLLKNIAIQVKSPNFRKGKNWKAVMGGLPILISIDD EVFLRGVLSGAEKLNKDDVLIADVKLIQTIEQNKIVNKYRVVNVIEHKKSSQICTF >gi|301349797|gb|ADCQ01000053.1| GENE 47 57055 - 57639 276 194 aa, chain - ## HITS:1 COG:STM2645 KEGG:ns NR:ns ## COG: STM2645 COG1280 # Protein_GI_number: 16765965 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Salmonella typhimurium LT2 # 4 194 6 195 195 106 35.0 2e-23 MFSLTSFLLYTFVTSITPGPNNIMSMSLGLKVGFRKTLYFNAGVLTGFCIITLLCAFFCA KLNEWIPEIRLPMLVLGTIYLIWLAVKILRSTYDTKAVEPKKGQAYFSGLFLQFVNVKVI VSAIVSIQMFVLPYYQSTEALAAFAIFIAISGTSCNLVWSGFGSVASRLFANHTKLINTI LAISLVFCAAGFWF >gi|301349797|gb|ADCQ01000053.1| GENE 48 57729 - 57977 268 82 aa, chain + ## HITS:1 COG:no KEGG:BDI_3315 NR:ns ## KEGG: BDI_3315 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 6 80 9 83 86 90 65.0 1e-17 MGGTMSDRLSYAEKEELPTSVYGLPERREYPMPDAAHVRAAEAYFRYCPEELKPELARAI LKRAKEFGVDVESPTVLQYAAE >gi|301349797|gb|ADCQ01000053.1| GENE 49 58428 - 58682 91 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIKLLLIDPIIWAFGVVREAPSLLGKIFYFFVLLLSAPAYYALAIPFAALIAGLILLMVV FTAALIGGFFFLIYIFWKIVFGAL >gi|301349797|gb|ADCQ01000053.1| GENE 50 58825 - 59661 773 278 aa, chain + ## HITS:1 COG:no KEGG:Cphamn1_2546 NR:ns ## KEGG: Cphamn1_2546 # Name: not_defined # Def: hypothetical protein # Organism: C.phaeobacteroides_BS1 # Pathway: not_defined # 6 272 2 273 277 288 50.0 1e-76 MTTRSGKPVVAFMYDFDGTLSPGNMQEYGFLDKLGESSTEFWRKSNEEARKFEMDPISAY MHLMIKETESRALNISKENLIKLGQTVELFPGVETWFKRINDYAQAKGLKVEHFIISSGL KEIIEGTPIAKEFRKIFASAFIFDAYGKPIWPAQIVNFTTKTQYIFRINKDSLDLADVKK VNQYIPQDERRVPFRRMVYFGDGDTDVPCMKLVKAEGGFSIAVYPARKKEKANQLLADNR CSYIAPTDYSPDAKVEKLAFGIIDLIAAQENLNKLAEK >gi|301349797|gb|ADCQ01000053.1| GENE 51 59762 - 60166 170 134 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Haemophilus influenzae R2866] # 2 124 4 128 136 70 33 3e-11 MKTIEVVAAIIHHNGKILATQRGYGDFKDGWEFPGGKMEAGETAEHAIVREIEEELNVEI RPEKLLHTVEYDYPNFHLTMHCFISVITKGTIELIEHEDAKWLKPNELDSVAWLPADVEV VEKLKIYLKEKDEL >gi|301349797|gb|ADCQ01000053.1| GENE 52 60169 - 63180 1432 1003 aa, chain - ## HITS:1 COG:MA1603_2 KEGG:ns NR:ns ## COG: MA1603_2 COG1061 # Protein_GI_number: 20090461 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Methanosarcina acetivorans str.C2A # 224 834 28 616 618 501 44.0 1e-141 MDHKLNIEDLQESLQTSFICKKHDSSEKYRSKFLINSGQSTAGNIQKVICDVLDELRSCE SFDISVAFITKGGTSLLKATLSELHEKGIKGRILTTDYNLFSEPSALKELAKFENIDVRM YRCKEGSGFHVKSFIFNHSSQCNVIIGSSNLTQNALTTNQEWNVKFVSTFEGEMVFLIKK EFEKLWNDPLSSPLEEVIEEYEQERKTLKDLQRKAKAYISSLPQKVELKPNKMQESFIKK LDEIYHSGQNRALLISATGTGKTYAAAFSVKHLMEQKRPEHHKRPIKKVLFVVHREQIAI QAKNSFARVIGSEHGQTYGLLSGNHKDKECTFLFSTIQTLSLDRILKDFAPDAFDFIIID EAHRSGANSYDKIMAHFQPEFWLGMTATPERTDDKDVFKIFNHQIAYEIRLKDALDYNLL CPFHYHGISDLKINNEEQKDFSNFAYLTSDERVKHVLQKAEEFKFSGERVKGLIFCSSVD EAKVLSEKLNQHNLRTTYLTGDSKPEARLAAVDRLAGADGPQALDYILTVDIFNEGVDIP EINQVIFLRPTQSPIIFTQQLGRGLRKAAGKEYVVILDFIANYEKNYLIPVALSGDNSYD KDSMRKLVMLGTKVIPGASTVEFEKVVRDRVLESIDNARTNTVELLRTSYQAIKNKLGRI PNLVDFYPHNGIDAVKFFEKKWAHYGSSYYGFLAKYEKDYTGKLSPLQAKMLSYLSGRFG NGKRVAEALLIESIINNKNTNADFFKEQLLKRFGIDASDDLLKNIVLNLSNQFNLTGDQK GRNKDVVFVEPIGTEDFRIADAFNRALNDETSSDFIVQLNDLIAFIYQRYDLRYSKRYRC MDLTLNEKYSYEDIPRLLNWSKYISAQIIGGYRYDDETNTLPVLVNYNKEDDAIAYEDHF ENEEYLIALSKTNRKVDSKDAEIIFRKQPEYKNTKILLFVRKNKNDSETKTFYFLGEMNA AGDPEPVAVPKRDGTGGKVSAFKVRYRLESNVRRDIYEYITES >gi|301349797|gb|ADCQ01000053.1| GENE 53 63365 - 63646 224 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859267|gb|EFL82349.1| ## NR: gi|302859267|gb|EFL82349.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 93 27 119 119 154 100.0 1e-36 MKIRNVAFIAALIGWIALAVYYVTPSESAVAKEIETAPKTVGETLSAIAQSLKHEGEEKR KQLRMDEGKQAPNPTPSAKELPKEAKKNPSNQK >gi|301349797|gb|ADCQ01000053.1| GENE 54 63789 - 64064 276 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859268|gb|EFL82350.1| ## NR: gi|302859268|gb|EFL82350.1| putative copper ion binding-like protein [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 167 100.0 2e-40 MYKTTVVVDGMHCSMCESQVKSLVMKILPDAKLSASHRKGTLTVEGSFIPSGNLLRKALK DGGYEVKDISTEKIEKKPGLFSSLFHALKSA >gi|301349797|gb|ADCQ01000053.1| GENE 55 64264 - 64620 193 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859269|gb|EFL82351.1| ## NR: gi|302859269|gb|EFL82351.1| putative permease of the major facilitator family protein [Burkholderiales bacterium 1_1_47] # 1 118 1 118 118 158 100.0 8e-38 MDLAQMAGWFAAGAAIIAMLQKSDLRLKQGLIIHTVLYGIHFALLGLPTAVISCVIALAR ISLSIYTRSLLCAAVLIISVATALTVSRSTVEILPLAASVVLTLSLFRFDGIKLRLGL >gi|301349797|gb|ADCQ01000053.1| GENE 56 64622 - 65392 703 256 aa, chain - ## HITS:1 COG:YPO1714 KEGG:ns NR:ns ## COG: YPO1714 COG1414 # Protein_GI_number: 16121974 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Yersinia pestis # 16 210 18 214 263 70 28.0 4e-12 MSEVPSQENRQFRLDRIVEVLELLSTSKEGVLLMDIVAALGIPTSTAYKLLAEMRRVGMI EATNGRGRQRLTKRITELGTIADRNAQKFASVAKYFDQLADELAETVYLVQLRGRLISLV GFSQPIETTGLHPGFAFPIHASAAGKILWAYQDEDLLETELKRSHIKFQDKTKVNPDDVR VALKDSLEKGYGVHDEEWDQGVLAISVPVFLGRKKPVMAVGIVAVKDRVLKKYSIEEIVE KLEKLRDKISPILEEA >gi|301349797|gb|ADCQ01000053.1| GENE 57 65573 - 67072 1487 499 aa, chain + ## HITS:1 COG:L137630 KEGG:ns NR:ns ## COG: L137630 COG1053 # Protein_GI_number: 15673106 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Lactococcus lactis # 30 497 50 496 502 188 30.0 2e-47 MQSHLISRRSLIKSSLIGLACSAAPAIRAAEKDDWTETYDVVIIGSGFAGLAAAYSALEN GVKSVLVLEKMNVFGGNSCINGGQISLAGSGLQKSKGIKDSPKLMEEDMLRVGQRLNHPA LVKAVVKESPACYDMMVKCGVKFADQVIRLGGHSAPRTIFAENYSGGGICVPMHNWLKER GVEFRNKSFCSAVLTDKDGVVRGVEVEGQYDFDKKTHKNTYKVQAVKGVIFATGGWGADN EFISASTPQYSTLESTSQKGATSESVRMLLGLGAMPVLLDIYQVGPWATPDEFGAGAASI FADYIFAEGIMVDARNGKRFVNELASRRERSEAEMKCVDQQGKPVMPFGFCSEKTTVNRP GFKASFREGTVKKFDTVEALAKFYGAPLEPLKQQIAEWNKMVAAGKDELFGRPLDRRVEL KAPFYAMRFWPKLHYCMGGIGINDQAQVISTKTCKPIPRLYAAGEITGGVHGLDRLGSCS STDCLAMGRIAGRSVAANL >gi|301349797|gb|ADCQ01000053.1| GENE 58 67086 - 67421 421 111 aa, chain + ## HITS:1 COG:no KEGG:SO_3300 NR:ns ## KEGG: SO_3300 # Name: not_defined # Def: cytochrome c # Organism: S.oneidensis # Pathway: not_defined # 1 111 4 121 126 67 32.0 1e-10 MKYIVLSMAAAFSILLSPAFAQNQTMSGSMARLHANVQCAQCHNNTQPMQAPQDTTCIQC HGKSSSIQLPANVNEKNYHNSPHYGDTVSCLECHREHQPQQNLCKNCHVIK >gi|301349797|gb|ADCQ01000053.1| GENE 59 67435 - 68529 1110 364 aa, chain + ## HITS:1 COG:RSp0955 KEGG:ns NR:ns ## COG: RSp0955 COG3203 # Protein_GI_number: 17549176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 6 245 5 264 368 99 31.0 1e-20 MKNLHLLAISVGMSIGSAAMAEPSVTLYGILDGGVSVSKLQHQSAKVQMTNGNWLSNRWG LMGQEDLGGGNSVFFKLEQGFNLSNGSEATAGKAFNRETALGLSGEWGKLGLGRFGGLSS DCGTFSILGGAAYSTSFSTIGNMYGAFYLTDRYNNSVAYVTPDFVGLQGHLMYSNGTDSD EEKWSQNSHYYGAGLTYNKDKLSVDVIYELLDHKGAVDQDKTRLLNLGASYDFGAFKLFG AYEYAQHAALPRIEFAEEKMSEAYNAGKANNYHAFSLSTSVKAFGGDLMVQGQYVFGKNK NSGKLEEGWDKKFNAYSIGAGYLYNFSKRTLVYVQGAWGKANKALNLAPGLSGWNTSLGV MHRF >gi|301349797|gb|ADCQ01000053.1| GENE 60 68690 - 69631 488 313 aa, chain + ## HITS:1 COG:sll0030 KEGG:ns NR:ns ## COG: sll0030 COG0583 # Protein_GI_number: 16332003 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 13 303 6 291 304 120 28.0 5e-27 MRKNQFGITRMNLEHLKTFHVVASLGSFTEAAKALYMTQPAVSQQIQGIEHALRNPLFDR SKRQIRLTAKGKILFSYTQKLFGIFREIENVFSDLNHLLTGELTIAASAVMGNYFLSSFI AEFYKKYPLISIRLEMGDSAYVTHLVEEGLADVALSRHVRNLKHCKQKLLIKEPYVCVCG PSSPLAALKRPLSAKEFAENYLVMRQKGSRMRSKLEEWFKSVGVYEFLSTPVIEVNSLES SKQLIARGFGAAAFPSIAVRQELKRESLIMLSVENFSVTADYFLGYNDKRELSPAAFEFI SLLTESMKPKDQI >gi|301349797|gb|ADCQ01000053.1| GENE 61 69755 - 70228 477 157 aa, chain + ## HITS:1 COG:all4694 KEGG:ns NR:ns ## COG: all4694 COG2954 # Protein_GI_number: 17232186 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 1 155 1 153 153 177 56.0 7e-45 MAKEIERKFLVIGDGWRENAVGTHYRQGYLNSVKERTVRIRTINDKAFLTVKGLTVGCTR LEFEYSIPYDDCVKMLDELAEKPIIEKTRYKIPAGNGLTWEIDEFHGVNEGLIVAEIEVS SEDTSFEKPDWLGEEVSSDPRYFNSNLVSHPYTTWNK >gi|301349797|gb|ADCQ01000053.1| GENE 62 70237 - 70875 641 212 aa, chain + ## HITS:1 COG:no KEGG:Ddes_1850 NR:ns ## KEGG: Ddes_1850 # Name: not_defined # Def: hypothetical protein # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 1 211 1 211 212 294 67.0 2e-78 MTNPYDKNKAISADEAAKIIPRAEFRVFGKNIIAGVQEHMWKCKATLYAARVMPEEIYFL SRRTNEANVKVRDGLLDIKTKVGETPEGYEIFQPRGKFKFPVKREELGEILKHLEVALEL TKDVYSLEEFIEMAKENSELAVVRVEKKRYGFSVEGIICEYAQVWFNGAMVETACCESEN YEGMKKATQALGISELPNTNYLKAAKQVLGMN >gi|301349797|gb|ADCQ01000053.1| GENE 63 70929 - 72449 1205 506 aa, chain + ## HITS:1 COG:MTH788 KEGG:ns NR:ns ## COG: MTH788 COG0471 # Protein_GI_number: 15678812 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Methanothermobacter thermautotrophicus # 52 465 6 407 443 109 25.0 1e-23 MTTSTVQTNYDPLDLNSYSLNRLPKKKLTKTGAFFKKWGLPIAAILFFVLAYVVQIPILN QKQEIMFALFATALFLWISEALPNYVTSMLLICGLVLTGILKAKPAMATLGDPVIWLNVS AFVLASALVKTQLVKRVALWLILRFGRNASAIFLTFLGINVLLAAFVNATAAKAALMMPL FMVISAVYGAPGTDTTNNFSRNLVLYNLVMINASCNAFMTGSGANLLAIALLAGAGCTIY YFDWLMAGLPLVIGFGIIGYGLGMRFIFPVSEEDKQPKLQGGMESLQKAYEELGPFKMDE LKAIAIFGLVLLVWATDKIHGINATVVAMTGAVIMLAPQFKLLNWNDVDIPWHLMIFSAG AYALGAGLTATKLMDTLTKAMMDGLGLASMSYFSLYALLTGIFIASHFIFQSKNMRTIIF MPIVIGIAQELKIDILSLAIPVALCINVCWSLPFNAKPNAMLYGTNKYTMGESFYYGFVM SFLYWLGLMLAGATYFKWLGITPGFF >gi|301349797|gb|ADCQ01000053.1| GENE 64 72545 - 73987 490 480 aa, chain + ## HITS:1 COG:no KEGG:HRM2_45680 NR:ns ## KEGG: HRM2_45680 # Name: not_defined # Def: hypothetical protein # Organism: D.autotrophicum # Pathway: not_defined # 4 458 12 505 513 141 25.0 4e-32 MLIDAIKQHGKKQIEVKQKIRITDKTKKLKYRVDTFFIFPGALQITENNFKKEEFKHNLK CYLSLSEQSPSLDGLLKELVARRIASGKEEKFDDFYKRFCLKYKTALQESSRSLMEKQEL SAEETETFLQTVYKLLDEFRNIKFSQENSEREVRLLDKLDEYLTVVTAFCLRDLNEVCIG EPRNKILSFWQEVEKYRASRFPVESIEGESKESAFLMRWSFLKKFVQSSLFLDIRYKQGA PLLTHSIYGSAAALSMLFATVVAFFYQDRYGSLSRNLFFALVIAYIFKDRFKEIVRDWLS NVIFRRWIPDRRLFIFMGKKKVGCAKENFGFVSLKELPIGSKDIFQGDNCLLSENFQHPK LTPYACDSIFRYSREITLSASEFPEGACLIDIIRFNVSEFLHNLGATSEELPFFCENGKS PKGEKLYNIYLFRSFCIGEKSDSEVIKVTVNAKAVRRITIVKSFENGMSVLENRGKFIYT >gi|301349797|gb|ADCQ01000053.1| GENE 65 74157 - 74567 447 136 aa, chain - ## HITS:1 COG:NMA1659 KEGG:ns NR:ns ## COG: NMA1659 COG0710 # Protein_GI_number: 15794553 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Neisseria meningitidis Z2491 # 15 124 146 254 265 80 38.0 6e-16 MYGADTIKNLKKDLNGVPVIVAYHDLKGTPSSEEIANILKKEIDAGGDVAKIVVKPNSQA YVLRFLNGTLEFRTKNPAYPVIASASGQEGRITRLAGGLFGIDLTFASGVKGSNPWQMPV QTVQEINKVIYPVTKK >gi|301349797|gb|ADCQ01000053.1| GENE 66 74582 - 75013 425 143 aa, chain - ## HITS:1 COG:lin0494 KEGG:ns NR:ns ## COG: lin0494 COG0710 # Protein_GI_number: 16799569 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Listeria innocua # 43 120 11 88 252 63 42.0 1e-10 MQKAKLSLIAAALLVPAFALSAYAEDFVRPMLTRPIQAGPTLLGGEQPVICSPLVGKNLE AIKAKAKTVKALNPDMVEVRADYWDFIEDTDKAIEALQAIRNIIGDTPILLTVRVAEERG FKKVDQNRSLIFTRRLRPSNSPI >gi|301349797|gb|ADCQ01000053.1| GENE 67 75572 - 75823 297 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 83 513 595 595 168 100.0 9e-41 MKENKKAGKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAG PETPEDVQEEPEAETLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 06:46:11 2011 Seq name: gi|301349796|gb|ADCQ01000054.1| Burkholderiales bacterium 1_1_47 cont1.54, whole genome shotgun sequence Length of sequence - 13021 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 5, operones - 2 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 172 178 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein - Prom 192 - 251 5.2 + Prom 367 - 426 7.4 2 2 Tu 1 . + CDS 592 - 1068 343 ## COG3304 Predicted membrane protein 3 3 Op 1 45/0.000 - CDS 1165 - 1956 543 ## COG0842 ABC-type multidrug transport system, permease component 4 3 Op 2 . - CDS 1953 - 2870 579 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 3054 - 3113 6.1 + Prom 3012 - 3071 7.1 5 4 Op 1 . + CDS 3106 - 4497 1226 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 6 4 Op 2 . + CDS 4494 - 6587 1476 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 7 4 Op 3 . + CDS 6622 - 7206 707 ## Hhal_0381 hypothetical protein 8 4 Op 4 . + CDS 7184 - 7954 612 ## Hhal_0380 cobalt transport protein 9 4 Op 5 . + CDS 7951 - 9372 216 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 10 4 Op 6 . + CDS 9389 - 9898 666 ## COG3721 Putative heme iron utilization protein 11 4 Op 7 . + CDS 9912 - 10418 673 ## COG0716 Flavodoxins 12 4 Op 8 . + CDS 10421 - 11062 764 ## COG0811 Biopolymer transport proteins 13 4 Op 9 . + CDS 11142 - 11471 237 ## gi|302859292|gb|EFL82374.1| biopolymer transport ExbD protein 14 4 Op 10 . + CDS 11473 - 12285 434 ## gi|302859293|gb|EFL82375.1| ferric siderophore transporter, periplasmic energy transduction protein TonB + Term 12350 - 12395 -0.9 + TRNA 12394 - 12484 61.0 # Ser TGA 0 0 15 5 Tu 1 . + CDS 12761 - 13019 87 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein Predicted protein(s) >gi|301349796|gb|ADCQ01000054.1| GENE 1 1 - 172 178 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 57 1 57 595 118 100.0 9e-26 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESKKIGTILGGQKDGKIRFD >gi|301349796|gb|ADCQ01000054.1| GENE 2 592 - 1068 343 158 aa, chain + ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 132 2 130 143 61 32.0 6e-10 MRTLGNIIWNIPFLGFVTAALVFLIGLLFVVTIIAAPIGLGLIQYSKFLLLPFSYDMVSK SEIDGDANKNILWQTYGFILKAVYVIFLGIPMVILSLVQIVCCFCSIIGIPVAIVMAKSL GTLLQPVGKVCVDHSVAQALLVEQGRSQLALRNRKERQ >gi|301349796|gb|ADCQ01000054.1| GENE 3 1165 - 1956 543 263 aa, chain - ## HITS:1 COG:RSc2955 KEGG:ns NR:ns ## COG: RSc2955 COG0842 # Protein_GI_number: 17547674 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Ralstonia solanacearum # 11 262 8 261 262 235 53.0 5e-62 MKFKIEPQPYRPGASFLTLLEKEILRFKKIALQTIFAPVLMGLLYLLVFGQVLAGKMPTF DGVNYLHFLVPGLVMMTMLQNAFGNSSSSMLSSKIMGSLIFIQLPPFAGWELSLAMIGAS IVRALIVGAGVLLASFLWSPPPMDHILWILVFGFMGAALMGSLGLICGLWADKFDQVGAF QSFVILPLTFLSGVFYSINQLPPIFQTLSRFNPFFYIIDGFRYGFFSQSDFNPWVSLSVV TISGVAAAAFATYLLQVGYKIRK >gi|301349796|gb|ADCQ01000054.1| GENE 4 1953 - 2870 579 305 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 5 304 8 309 318 227 41 3e-59 MTEFNIPALQIEHISKSFNAGKNPKKALSDVRFSIEQGDFFGLLGPNGAGKSTLIGVLAK TVTPDSGNVSVLGYDIRRDWQQFKMAIGIVPQEITFDPFLSVWETLRLQSGYFGLRHNDK WLNELLEVLDLADKKKESVMRLSGGMKRRVLIAQALVHKPPLIVLDEPTAGVDINLRHSL WTFMEELNRKGHTIILTTHYLEEAERLCRNVAMLNHGRIAALENTRDLLKEYSKDRVVFT LSAPLPSDFPIQVEKLQDGFYCLNYDTPEGLRILLDELHKRGLEPEGLELGKANLEEVFM RITSK >gi|301349796|gb|ADCQ01000054.1| GENE 5 3106 - 4497 1226 463 aa, chain + ## HITS:1 COG:YPO0286 KEGG:ns NR:ns ## COG: YPO0286 COG0635 # Protein_GI_number: 16120625 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Yersinia pestis # 42 460 17 429 437 317 39.0 4e-86 MQAQHTDRQKAVPMFNAFQSKGQDDISRWLAKVSENPIVEAFPEKIDIHPGMDSSMLLPT EMPEVLSELVSKPRTRRTVAYINVPYCETRCLYCLFYIKPYRNKEESNAFADTLIKELQL WSDKPVQKGEPVHAVYFGGGTPTALEACDIERIIKAVRRYLPLANDCEITYEGRLSGFGT DKMEAALAGGANRFSLGVQSFDTKIRQAVGRRSDKETLIRQLEKLMSYDQAAVVIDLIYG FPFQTLETWKEDLRIGRELNLDGIDCYQLRVFEKSPLYKYIQNGKLPPGPDHELRAAMFQ EAVQSMHEAGWKRLSISHWASNTRERNFYNYYAKTRTDCLAFGPGAGGNLSGYGFMQHRQ PDAWAKAVESGVKPIAMMTKPPLFWELGRAVAEQLELNFFNPSQLAHEFSEKFATLWNPL IDNWTEAGLLAPVGNRFELTVPGQFWQGRMTQHILDYFKSQTK >gi|301349796|gb|ADCQ01000054.1| GENE 6 4494 - 6587 1476 697 aa, chain + ## HITS:1 COG:Z3159 KEGG:ns NR:ns ## COG: Z3159 COG1629 # Protein_GI_number: 15802478 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 EDL933 # 1 676 5 697 719 305 31.0 1e-82 MTTNLTFKLTAAAALTFCSLALQAEETVQTSEVTVTAGRVEQQLLEVPMAVTVVTNQEIQ ESAARNVGELLEDIPGVMVNNAGSQGLKRVSIRGEDTFRTLTLIDGQKISEQKSMSGASI LIDPSSIERIEVIKGPASVLYGSDALGGVVNIITKKGSKKPFEAEGSVAWNGAGHGWAET ISLGGTYKGLNYHLDAGYQSHGNIKTPLGYQKGTDFRQKNASAFLSYDFNEHFTAGLRAD TFDSDINSSSWEYEQDPNSEFFVHIPKWKRDKVALFAEGKNLNEYLTRLRWDGYWQKNHK NMRNYVSLSPMPRAKVITDSLADNRIKTYGTSLQADWQLGESNFLITGYEFVQDQLEADT EARSSMSMGPMTMSNKQTHRYNKGKETTNAIFASMETTLPMDFTLNYGVRYTWVESKLNK ASASVNGYDSKGRYKNHDDGSAGKTGSDRNSRPVFNLSLNWTGLPDTSLRAGWSQGFRVP NLQEKYLMNNMGGGTIIGNPDLKPEKSNNFEVGARYAGSAVEADFSLFYNLADDYISTVH KDSREYTYLNADKAKTFGAELSVNFKPTDHIFPYASMTWLRRKTEWGSGVSTYDSGVAGF TARYGVKTELEVFNGRWNTDTYLRSKTASKSYSPSTNEATRVAGYTTLNFATTYHFGPKK RYMVSAEAINITNQLYSYGDSIYEPGRHFNFKLSAKY >gi|301349796|gb|ADCQ01000054.1| GENE 7 6622 - 7206 707 194 aa, chain + ## HITS:1 COG:no KEGG:Hhal_0381 NR:ns ## KEGG: Hhal_0381 # Name: not_defined # Def: hypothetical protein # Organism: H.halophila # Pathway: not_defined # 15 192 20 197 199 114 44.0 3e-24 MTEMVLERREGQSWLRRLGDRWGARDLVVIGVFAATAKLSTVLIAMVGGGMNPVSLLLKN VVFTTLLVIMLYKVRQPGTLTLFVIVSALVNFLLLGGNVTLIPPMLAAALVSEVVMKFVK SFGWKGAVFWGVGCFDFLSKGLSLAVSYLMMRESPALMAVVLPIVLIGYAGSLLGLYTGC RSMKELRHAGIVRF >gi|301349796|gb|ADCQ01000054.1| GENE 8 7184 - 7954 612 256 aa, chain + ## HITS:1 COG:no KEGG:Hhal_0380 NR:ns ## KEGG: Hhal_0380 # Name: not_defined # Def: cobalt transport protein # Organism: H.halophila # Pathway: ABC transporters [PATH:hha02010] # 12 244 17 248 254 153 36.0 5e-36 MQASSASKFDVLTQLDVRSKMLIAALAAVMTIALSSLNSQLLLFTTSLLYLFALGRYKLI FVSYAASLLMMALSVGFASVLALFIPSMGKSLELSSLCIPFLRALTVMNTILPMAFTGRL QNILNGLQQLKLPFIIYLPAAVIIRFIPTFAGDVKQIWESLKIRGFKINPWQCTIHPIRT TRLLFTPLLFRALKTSDELGIAAELKGLHAGSNSGSMHRRRFGKHDIAAITLVLLICTGA VLLQIYFPTDIKAAMR >gi|301349796|gb|ADCQ01000054.1| GENE 9 7951 - 9372 216 473 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 261 455 9 207 309 87 31 4e-17 MIELKNVTYRYPFSDRNALEDISLKVRPGEAVLCTGVSGCGKSTLIRLINGLCPHYFGGE LQGTVRVAGQDNQKLKLHEISSRVGTLFQNPETQFFALGVEEEMAFKPESRGMPPDKIRE LIAKTSQRFGLNSVLKNTIHELSQGQKQKVGLASLMMEPLQVLILDEPTGNLDPESTMDL AEEILRLKEKGVAVLIVDHRLYWLKDVADRVCVMEKGRIVQEGTFDDLSDEVRERYGLRK VDVEDKRHELPSLSEGKETVMKVSDLSFAYPRKPKIFNGTDLELRKGITGLFGPNGTGKT TLARILTGLNKPTQGTLEIRGKKVKPQECLKHVAVVLQNADHQLYMRTVFDELLTSLEAA GCRGGKQAAEELLQLFDLTELRDRHPHSLSGGQQQRLVIACAFAKKPDVIILDEPTSGLD GANLHRIAGALRQLSDEGKAVLVITHDLELVDMVCDSAIRLPLQKINLSATFQ >gi|301349796|gb|ADCQ01000054.1| GENE 10 9389 - 9898 666 169 aa, chain + ## HITS:1 COG:VCA0908 KEGG:ns NR:ns ## COG: VCA0908 COG3721 # Protein_GI_number: 15601662 # Func_class: P Inorganic ion transport and metabolism # Function: Putative heme iron utilization protein # Organism: Vibrio cholerae # 3 168 26 192 193 119 38.0 3e-27 MTTIVEQQNKINELLNSGRPVTLETIAQALSVTAQEAAHLLPEGSATFAPGSDFESVWAA IAEWEKITFIVTAHGNVIEVETKLVTGKAAMGYYNLMGGKSPLQGHFKYGDISEIGFVTM PFMGRESHFAAFFTTSGEVAYSMYVGREKHKLIESAKEKFLALQQKYKA >gi|301349796|gb|ADCQ01000054.1| GENE 11 9912 - 10418 673 168 aa, chain + ## HITS:1 COG:FN0772 KEGG:ns NR:ns ## COG: FN0772 COG0716 # Protein_GI_number: 19704107 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Fusobacterium nucleatum # 1 163 1 169 169 84 33.0 1e-16 MKVLVAYATVTGNTEIIARAIASAIPGADLKKLPADVNPQDYDFIFAGFWCDKGTPDEVW QAFQKDAKARPIAYFGTMGGDPNSERGQAWVNKVAGLFPCENFKGLRVWQGKIDPKILAA MAKMPGAKPMTPERRARLDEAAKHPTAEDQAQAGAWALELLKNFHNDK >gi|301349796|gb|ADCQ01000054.1| GENE 12 10421 - 11062 764 213 aa, chain + ## HITS:1 COG:VC1547_2 KEGG:ns NR:ns ## COG: VC1547_2 COG0811 # Protein_GI_number: 15641555 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Vibrio cholerae # 101 181 93 173 205 78 45.0 1e-14 MDIKEIYNLIGCAGIALVVIGFFALYITVWNFLYLRGVLSRFKKHFHGMDKATPERISRF FGESTNPLECIVRDIVMTHGAHSDDIRAEVAYLFHKHFKPVNNALTWLKLISAVSPLLGL LGTVVGMVTVFRTISENVSPDPTMLAGGIWTALITTVMGLVVAIPALMAYYYLMLKVKEL RIEAVEYSYRALNIRREPCRCSQNLEEIEQKAA >gi|301349796|gb|ADCQ01000054.1| GENE 13 11142 - 11471 237 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859292|gb|EFL82374.1| ## NR: gi|302859292|gb|EFL82374.1| biopolymer transport ExbD protein [Burkholderiales bacterium 1_1_47] # 1 109 22 130 130 196 100.0 4e-49 MLVIFFVMTMTFSKPVLDVVLPAAQNSEVRKKAAELVLSVNSDGKYFFNDQEILKEDLPR FLSEHPEGSLNLMVDEKAPFEAFVYLADLAKVNREGRFVISTKASVPQN >gi|301349796|gb|ADCQ01000054.1| GENE 14 11473 - 12285 434 270 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859293|gb|EFL82375.1| ## NR: gi|302859293|gb|EFL82375.1| ferric siderophore transporter, periplasmic energy transduction protein TonB [Burkholderiales bacterium 1_1_47] # 1 270 1 270 270 295 100.0 2e-78 MFSPSRKDNELLKAKRLSKAALAAFACAFAWAGCTLKTDVPQSSQQPRTIELSFAQIQDI QPEEAPEVRPEPQPQPVIEEPKKLLTDESEFKVEPEKVVEEKLPESEAKPVPPAPVPAEQ SKPKKADPEKPKPKALEKPKPAKKPKEPKAEKGEPALQKASESAEAKAASHAAAEQAPKR KSITAMLVSLVEKHKRYPKAARRAGMEGVVLVEFTVDSSGKVTGASVIKKSGNGPLDSAS QELSNRIIGTAFNVPNAGMKIQVPIRYSLD >gi|301349796|gb|ADCQ01000054.1| GENE 15 12761 - 13019 87 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 86 1 86 181 154 100.0 1e-36 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGLSIPEIQREI Prediction of potential genes in microbial genomes Time: Fri May 13 06:47:54 2011 Seq name: gi|301349795|gb|ADCQ01000055.1| Burkholderiales bacterium 1_1_47 cont1.55, whole genome shotgun sequence Length of sequence - 95440 bp Number of predicted genes - 89, with homology - 83 Number of transcription units - 57, operones - 23 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 669 - 728 4.5 1 1 Op 1 34/0.000 + CDS 774 - 1442 533 ## COG0765 ABC-type amino acid transport system, permease component 2 1 Op 2 16/0.000 + CDS 1470 - 2297 281 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 3 1 Op 3 . + CDS 2342 - 3154 672 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 3191 - 3228 4.5 4 2 Op 1 . + CDS 3297 - 3443 191 ## 5 2 Op 2 . + CDS 3481 - 3627 176 ## + Term 3655 - 3721 10.1 - Term 3656 - 3697 5.1 6 3 Op 1 . - CDS 3792 - 4085 286 ## gi|302859298|gb|EFL82380.1| conserved hypothetical protein - Term 4094 - 4136 5.2 7 3 Op 2 . - CDS 4145 - 4441 400 ## gi|302859299|gb|EFL82381.1| conserved hypothetical protein - Prom 4583 - 4642 4.6 - Term 4610 - 4640 5.0 8 4 Tu 1 . - CDS 4659 - 6158 1901 ## COG0591 Na+/proline symporter - Prom 6186 - 6245 7.0 - Term 6220 - 6261 -1.0 9 5 Tu 1 . - CDS 6274 - 7377 1201 ## COG2896 Molybdenum cofactor biosynthesis enzyme - Prom 7482 - 7541 4.7 + Prom 7399 - 7458 3.7 10 6 Op 1 30/0.000 + CDS 7600 - 9009 974 ## COG0065 3-isopropylmalate dehydratase large subunit 11 6 Op 2 . + CDS 9013 - 9621 403 ## COG0066 3-isopropylmalate dehydratase small subunit - Term 9485 - 9522 -0.2 12 7 Tu 1 . - CDS 9697 - 10527 822 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 10703 - 10762 2.4 + Prom 10593 - 10652 3.0 13 8 Tu 1 . + CDS 10756 - 11121 206 ## COG3603 Uncharacterized conserved protein + Prom 11257 - 11316 4.5 14 9 Op 1 . + CDS 11555 - 11725 75 ## 15 9 Op 2 . + CDS 11667 - 12677 600 ## Tola_1326 hypothetical protein 16 9 Op 3 2/0.105 + CDS 12690 - 13667 951 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 17 9 Op 4 . + CDS 13681 - 14523 1005 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 18 9 Op 5 . + CDS 14538 - 15587 978 ## YPDSF_1126 hypothetical protein + Term 15599 - 15647 7.1 19 10 Op 1 . + CDS 15664 - 18171 1808 ## COG0178 Excinuclease ATPase subunit 20 10 Op 2 . + CDS 18264 - 19718 1202 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Term 19726 - 19762 8.0 - Term 19712 - 19748 8.0 21 11 Op 1 . - CDS 19757 - 20683 799 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 22 11 Op 2 . - CDS 20727 - 21518 335 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 23 11 Op 3 . - CDS 21560 - 21664 57 ## - Prom 21776 - 21835 11.2 + Prom 21777 - 21836 5.6 24 12 Op 1 . + CDS 22018 - 23319 1634 ## COG0172 Seryl-tRNA synthetase + Term 23338 - 23369 4.1 25 12 Op 2 . + CDS 23377 - 24384 878 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 24547 - 24596 9.0 - Term 24645 - 24683 9.1 26 13 Op 1 . - CDS 24695 - 26353 2082 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 27 13 Op 2 . - CDS 26406 - 26894 318 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 26932 - 26991 5.9 - Term 27163 - 27215 1.3 28 14 Tu 1 1/0.105 - CDS 27249 - 29036 1955 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 29073 - 29132 2.7 29 15 Op 1 . - CDS 29137 - 30591 878 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 30 15 Op 2 8/0.053 - CDS 30598 - 31260 608 ## COG4566 Response regulator 31 15 Op 3 . - CDS 31244 - 33064 739 ## COG0642 Signal transduction histidine kinase - Prom 33234 - 33293 4.6 - Term 33323 - 33362 8.4 32 16 Op 1 . - CDS 33388 - 33744 455 ## gi|302859322|gb|EFL82404.1| conserved hypothetical protein - Prom 33770 - 33829 5.0 33 16 Op 2 . - CDS 33833 - 35302 1054 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 35351 - 35410 7.3 + Prom 35418 - 35477 3.9 34 17 Tu 1 . + CDS 35539 - 35952 443 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Term 35959 - 36011 2.3 35 18 Tu 1 . - CDS 36028 - 36993 1053 ## COG0679 Predicted permeases 36 19 Op 1 3/0.053 + CDS 37610 - 38341 1071 ## COG3314 Uncharacterized protein conserved in bacteria 37 19 Op 2 . + CDS 38357 - 38830 664 ## COG0700 Uncharacterized membrane protein 38 19 Op 3 . + CDS 38862 - 40007 1609 ## VV2_1131 isoaspartyl dipeptidase + Term 40032 - 40071 7.2 + Prom 40058 - 40117 6.0 39 20 Tu 1 . + CDS 40294 - 46734 2572 ## COG3468 Type V secretory pathway, adhesin AidA + Prom 46814 - 46873 2.8 40 21 Op 1 . + CDS 46993 - 48792 1275 ## COG4690 Dipeptidase + Term 48816 - 48861 5.2 41 21 Op 2 . + CDS 48867 - 49649 483 ## Tola_1162 hypothetical protein + Term 49682 - 49708 0.3 - Term 49663 - 49701 3.9 42 22 Tu 1 . - CDS 49790 - 50143 297 ## COG0239 Integral membrane protein possibly involved in chromosome condensation - Prom 50252 - 50311 8.2 43 23 Tu 1 . + CDS 50629 - 51843 1799 ## COG1301 Na+/H+-dicarboxylate symporters + Term 51875 - 51904 3.5 + Prom 51898 - 51957 5.3 44 24 Tu 1 . + CDS 51982 - 52182 175 ## gi|302859334|gb|EFL82416.1| hypothetical protein HMPREF0189_01658 + Term 52260 - 52295 -0.8 - Term 52175 - 52216 8.1 45 25 Op 1 . - CDS 52237 - 52752 614 ## COG1225 Peroxiredoxin 46 25 Op 2 . - CDS 52765 - 53007 262 ## gi|302859336|gb|EFL82418.1| putative SpoVT / AbrB like domain protein - Prom 53041 - 53100 2.8 - Term 53093 - 53121 1.0 47 26 Tu 1 . - CDS 53136 - 54077 827 ## gi|302859337|gb|EFL82419.1| conserved hypothetical protein - Prom 54189 - 54248 7.3 + Prom 54046 - 54105 5.6 48 27 Tu 1 . + CDS 54230 - 54646 465 ## COG2131 Deoxycytidylate deaminase - Term 54699 - 54749 7.1 49 28 Tu 1 . - CDS 54835 - 55209 541 ## gi|302859339|gb|EFL82421.1| conserved hypothetical protein - Prom 55259 - 55318 1.8 - Term 55276 - 55304 -0.9 50 29 Op 1 . - CDS 55322 - 55969 609 ## COG0546 Predicted phosphatases 51 29 Op 2 . - CDS 55987 - 57447 1591 ## COG1530 Ribonucleases G and E - Prom 57468 - 57527 3.0 + Prom 57411 - 57470 4.5 52 30 Op 1 . + CDS 57577 - 59040 1059 ## CAP2UW1_0180 hypothetical protein 53 30 Op 2 . + CDS 59060 - 60514 1569 ## CAP2UW1_0179 GTP-binding protein HSR1-related + Term 60732 - 60781 -0.5 + Prom 60838 - 60897 3.5 54 31 Tu 1 . + CDS 60938 - 62587 1980 ## COG0281 Malic enzyme + Term 62611 - 62649 2.2 - Term 62647 - 62677 3.0 55 32 Tu 1 . - CDS 62685 - 63356 829 ## COG2860 Predicted membrane protein - Prom 63517 - 63576 8.4 - Term 63533 - 63576 3.1 56 33 Tu 1 . - CDS 63584 - 63904 234 ## gi|302859346|gb|EFL82428.1| probable Rhs-family protein - Prom 63965 - 64024 6.4 + Prom 63959 - 64018 6.5 57 34 Op 1 . + CDS 64244 - 65434 1238 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 58 34 Op 2 . + CDS 65514 - 66443 649 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Term 66442 - 66472 4.1 59 35 Op 1 . - CDS 66481 - 67365 707 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity 60 35 Op 2 . - CDS 67307 - 67849 350 ## gi|302859350|gb|EFL82432.1| UmuD protein 61 35 Op 3 1/0.105 - CDS 67929 - 68519 465 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 62 35 Op 4 . - CDS 68540 - 68935 272 ## COG0789 Predicted transcriptional regulators - Prom 68986 - 69045 5.6 + Prom 68934 - 68993 2.9 63 36 Tu 1 . + CDS 69020 - 71716 2813 ## COG2217 Cation transport ATPase + Term 71779 - 71820 1.1 64 37 Tu 1 . + CDS 72236 - 72562 561 ## gi|302859355|gb|EFL82437.1| FMN-binding domain protein + Term 72606 - 72633 -0.8 - Term 72557 - 72594 6.0 65 38 Tu 1 . - CDS 72626 - 73093 583 ## gi|302859356|gb|EFL82438.1| hypothetical protein HMPREF0189_01680 - Prom 73146 - 73205 10.4 + Prom 73146 - 73205 8.2 66 39 Tu 1 . + CDS 73354 - 74331 731 ## COG0042 tRNA-dihydrouridine synthase - Term 74266 - 74310 10.2 67 40 Op 1 38/0.000 - CDS 74349 - 75221 577 ## COG0581 ABC-type phosphate transport system, permease component 68 40 Op 2 . - CDS 75235 - 76116 395 ## COG0573 ABC-type phosphate transport system, permease component 69 41 Tu 1 . + CDS 76103 - 76306 75 ## + Term 76393 - 76451 -0.6 70 42 Tu 1 . - CDS 76244 - 77065 829 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 77128 - 77187 5.5 71 43 Tu 1 . + CDS 77349 - 78077 219 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Term 78082 - 78113 1.1 72 44 Op 1 . - CDS 78133 - 78471 444 ## COG0526 Thiol-disulfide isomerase and thioredoxins 73 44 Op 2 . - CDS 78489 - 79721 1062 ## COG0786 Na+/glutamate symporter - Prom 79805 - 79864 2.6 + Prom 79749 - 79808 2.2 74 45 Tu 1 . + CDS 79833 - 80753 1014 ## COG4866 Uncharacterized conserved protein + Term 80973 - 81014 0.4 - Term 80700 - 80732 -1.0 75 46 Tu 1 . - CDS 80776 - 81306 333 ## gi|302859365|gb|EFL82447.1| hypothetical protein HMPREF0189_01689 - Prom 81330 - 81389 1.8 + TRNA 81768 - 81843 85.0 # Ala CGC 0 0 - Term 81626 - 81661 -0.6 76 47 Op 1 . - CDS 81879 - 81974 59 ## 77 47 Op 2 . - CDS 82033 - 83484 1249 ## COG0790 FOG: TPR repeat, SEL1 subfamily - Prom 83693 - 83752 4.3 + Prom 84009 - 84068 6.2 78 48 Tu 1 . + CDS 84101 - 84829 610 ## COG2188 Transcriptional regulators + Term 84887 - 84921 6.0 79 49 Tu 1 . + CDS 84939 - 86996 1860 ## COG1200 RecG-like helicase + Term 87065 - 87100 -0.2 - Term 86988 - 87023 7.1 80 50 Op 1 4/0.053 - CDS 87031 - 87864 880 ## COG0345 Pyrroline-5-carboxylate reductase 81 50 Op 2 . - CDS 87867 - 88592 523 ## COG0325 Predicted enzyme with a TIM-barrel fold - Prom 88694 - 88753 8.4 + Prom 88693 - 88752 5.4 82 51 Tu 1 . + CDS 88858 - 89352 631 ## gi|302859372|gb|EFL82454.1| putative transposase IS1296EH (ORFA) 83 52 Tu 1 . + CDS 89480 - 90082 448 ## COG1636 Uncharacterized protein conserved in bacteria + Prom 90209 - 90268 3.3 84 53 Tu 1 . + CDS 90295 - 90897 410 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Term 91013 - 91078 4.9 85 54 Tu 1 . - CDS 91099 - 92148 1412 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 92173 - 92232 5.5 + Prom 92515 - 92574 5.1 86 55 Op 1 . + CDS 92628 - 93077 498 ## Acfer_0863 hypothetical protein 87 55 Op 2 1/0.105 + CDS 93090 - 94598 1905 ## COG3333 Uncharacterized protein conserved in bacteria + Term 94618 - 94649 2.4 + Prom 94643 - 94702 6.1 88 56 Tu 1 . + CDS 94798 - 95154 630 ## COG3181 Uncharacterized protein conserved in bacteria - Term 94994 - 95036 0.1 89 57 Tu 1 . - CDS 95185 - 95436 339 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349795|gb|ADCQ01000055.1| GENE 1 774 - 1442 533 222 aa, chain + ## HITS:1 COG:SMc03893 KEGG:ns NR:ns ## COG: SMc03893 COG0765 # Protein_GI_number: 15967029 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Sinorhizobium meliloti # 3 220 2 219 226 211 51.0 6e-55 MDPHVWQVMVDAFPQLLFKGITVTIPLTIISFALSMVIAVVVALIQYSKVPVLRQICRFY VWVIRGTPLLVQLYVVFFGLPSIGIMVDAFLAAVIVFSINEGAYNAETIRGALESVPQGQ MEAGRCVGLNYFQIMWHVVLPQAFRTAFPALGNSMISMVKDTSLAANITVAEMFFQAQRI AGRTYETMAVYIEVALIYLIFSTILEYLQRRGEKKLGKYGTN >gi|301349795|gb|ADCQ01000055.1| GENE 2 1470 - 2297 281 275 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 22 225 20 221 223 112 34 5e-24 MEKTDSLLLISHVKKSFGTLEVLKDISIDVYKGDVVSILGPSGSGKTTLLRCVNFLERAD YGSISLDDKTIDLKTATKEQASEIQRKAGFVFQNYNLFRNKTALENITLGLTSGRGMSRA DAVKKGMMLLRKIGLEDRANSYPSELSGGQQQRVAIARALATDPEIIYFDEPTSALDPEL TDEVLEVMRQLAQEGMTMVVVTHEMNFARNVSNRVIFMDHGLIVEQGSPEQIFEHPQNER TRAFLRLASGSQEAQRSALEAFKKQREAENAMNSL >gi|301349795|gb|ADCQ01000055.1| GENE 3 2342 - 3154 672 270 aa, chain + ## HITS:1 COG:CAC3325 KEGG:ns NR:ns ## COG: CAC3325 COG0834 # Protein_GI_number: 15896568 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Clostridium acetobutylicum # 6 268 5 269 269 223 44.0 4e-58 MKFGLGLFLAGSASLMLVGCDKAPSRNSASASQDHLARIKSSGELKVGLEGDWQPFSFHN EKDQLVGYDVEVAQNLAKKLGVKAKIVEGPWDGLFAGMDTGRYDLVINGVDVTPDRAKTY DFSTPYAYDRTVLITRSDNNDIHSFNDLKGKTTANSIGSTYQEIGEKYGAKVSGVDTLAE TLQMVKNRQVQATINASTSYGDYMKHRPDEPLKIAATMDKVTEYAIPMKKGEDNASLKKA IDNALQEMKNDGTLSKLSVKYFGADLTKPN >gi|301349795|gb|ADCQ01000055.1| GENE 4 3297 - 3443 191 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKWVLMVMAAAFTLSVSACSTVKGVGQDVSAVGDDIDTAATAVQKKL >gi|301349795|gb|ADCQ01000055.1| GENE 5 3481 - 3627 176 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKFSLLAILAAFLIGLAGCNTVKGVGKDVAALGNGVDHAATTVSNKM >gi|301349795|gb|ADCQ01000055.1| GENE 6 3792 - 4085 286 97 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859298|gb|EFL82380.1| ## NR: gi|302859298|gb|EFL82380.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 97 1 97 97 187 100.0 2e-46 MKKFFLALAALSLSFTAFAAGDDDAFYGKIEKMPSAQNPTWVIGGKTFKADARTKVESHG GHKFDVGACVKVEGDIDHRGEFFISEMEIKNETRCHK >gi|301349795|gb|ADCQ01000055.1| GENE 7 4145 - 4441 400 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859299|gb|EFL82381.1| ## NR: gi|302859299|gb|EFL82381.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 98 1 98 98 194 100.0 1e-48 MKLVKVLLPLAAVGLIMGTASARDIDGFYGKVEQMPTAENPAWVIGGKTFKVDQRTKIEH RRDQKIGVGSCVKVDGDLDREGNFFISEIEQKRDNRCR >gi|301349795|gb|ADCQ01000055.1| GENE 8 4659 - 6158 1901 499 aa, chain - ## HITS:1 COG:PA0783 KEGG:ns NR:ns ## COG: PA0783 COG0591 # Protein_GI_number: 15595980 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Pseudomonas aeruginosa # 4 496 5 497 506 552 61.0 1e-157 MNFSPISITFFAYLVVMVAVGLVAWRYTKNFNDYILGGRRLGAVVTALSVGASDMSGWLL MGLPGAVFLSGICESWIAIGLALGTLANWLIVAAPLRVYTETAHNALTLPDYFSHRFEDK SRMLRIISAVVILLFFAIYSASGMVASARLFEIVLDLPYSTALIFGTFATLAYVFLGGFL AVSWTDTIQAAMMCLALIIAPVAVMIDLGGFSATVEQVRSVDPTHLNMLQGQTFIGVISL LAWGLGYFGQPHILVRFMAAKNASVMPRACKISMIWLIFSLSGAVAAGFFGSAFFSAHPD LGKAVAENHERVFMILSTTLFNPWIGGILLSAILAAVMSTLSCQLLVCSSVLTEDFYRVF IRPHAAQRELVWIGRLTVVAVSAVAILIATDPNNLVLSLVSYAWGGFGASFGPIIILSLL WKGVTRNGALVGIIVGALTVLVWHQGAWWGMYEIIPGFVLSFIAIIVVSLLDPNKPSATM IETFDKVQHKLEDVKKQLA >gi|301349795|gb|ADCQ01000055.1| GENE 9 6274 - 7377 1201 367 aa, chain - ## HITS:1 COG:RSc1039 KEGG:ns NR:ns ## COG: RSc1039 COG2896 # Protein_GI_number: 17545758 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Ralstonia solanacearum # 1 367 1 373 373 415 52.0 1e-116 MSSRVIPIKAATKTVPLVGEIRRDETHWIDSRGRPLRDVRISITDRCNFRCRYCMPKEKF EKDHCFLSHTEVLSFEEIIRLAKIFAANGIEKIRLTGGEPLLRKGIEFLIEELSKLKTWN GKPLDVAVTTNGAALSAKAKSLAAAGLKRLTVSLDAMDPQIYKDLNDVNFPIEKTLAGIQ AAKDAGIPSIKINVVVKRGVNEKELIKIAEHFKGSGIIVRYIEFMDVGTSNGWRLDDVIP SHKIVEEINRVYPIEPLNPNYTGEVATRWAYKDGSGELGFISSVSEPFCKECSRIRLSVD GKLYKCLFATEGFDIRQMLRGGASDEEIEDAIGRIWTTRDEHYSEIRTEETVKARAGKRI EMSYIGG >gi|301349795|gb|ADCQ01000055.1| GENE 10 7600 - 9009 974 469 aa, chain + ## HITS:1 COG:STM0329 KEGG:ns NR:ns ## COG: STM0329 COG0065 # Protein_GI_number: 16763709 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Salmonella typhimurium LT2 # 1 467 1 466 473 509 55.0 1e-144 MTTKTLYDKIVDLHTIEKLSADGIERLVYIDRTVVNEYTSPQAFSLLRENGLKVWRPWAT LGTVDHVNSSAPDRTEFPAEENACTQVKYLIKNGSDFGFEVLNNGNPKQGIEHVVMVERS KVLPGMQIGAGDSHTAMYGALGAVAYGIGTSDMYHYLATSTLRYKKLKNMRVRVTGARGK TVTAKDIILFIVKKLGAGGCTGHCVEFCGPVISDLSVEERLTLCNMAVECAARSSIIAPD QKVFDYLEGREFAPKGETWSKAVEFWKTLKSDEEALFDKEVEIDITGLEPSVTWGTSPDQ NCTISESIPDPVSITDPKIRADYERALAYMGLEAGQKIKGLPITHAFIGSCTNSRIEDLR AAAEVLRGKKLAPGVKAFVVPGSTQVRAQAEKEGIDKIFKDAGWEWRNSGCSLCLAMNGD ILGAGDRCISATNRNFEGRQGVQTRTHLASPAMVAIASVKGFIADVREE >gi|301349795|gb|ADCQ01000055.1| GENE 11 9013 - 9621 403 202 aa, chain + ## HITS:1 COG:SMc03795 KEGG:ns NR:ns ## COG: SMc03795 COG0066 # Protein_GI_number: 15966931 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Sinorhizobium meliloti # 1 200 1 200 201 207 49.0 1e-53 MEKFEKLTAVAAPMPASNIDTDIIMPKAFLKRIDKEGVLEGLFHDIRLYEDGTEREEFVL NQPEYRNARILVTGPNFGCGSSREHAVWGLEKRGIKCLIGSSFAGIFFDNCANNGVLAIV LPKDTVSALIQELQNSESKNVTVDLEAQTVTTPSGAVLHFEIEPSRKEKLLQGLDPVALT LKSEEKIKNFEDEYFKKFPWLA >gi|301349795|gb|ADCQ01000055.1| GENE 12 9697 - 10527 822 276 aa, chain - ## HITS:1 COG:SMa0326 KEGG:ns NR:ns ## COG: SMa0326 COG1028 # Protein_GI_number: 16262630 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 2 275 7 275 279 187 42.0 2e-47 MKTWLITECSSGFGRNLAETLLSEGEQVIVTARKPKTIQHFAKNYPLTALCLRLDVTKKD TIDATVNAAIEKFGKIDVLINNAGYCLRGAVEECTEEEIYAEFNTNFFGAVRMIQAVLPH MRKAGIGAIINYSSIAALDTSAGSAFYGAAKCALEGLSCGLRKEVEPLGIKVMVVEPGPF KTDFFDRSIDINPNRIAAYDDTANERKVKISDLSKVDIKWCDMGRACKLITDIIQRPDAP HHILLGSMAVEIGEKFVKDRAEEIQKWKEASESLDA >gi|301349795|gb|ADCQ01000055.1| GENE 13 10756 - 11121 206 121 aa, chain + ## HITS:1 COG:MA2818 KEGG:ns NR:ns ## COG: MA2818 COG3603 # Protein_GI_number: 20091642 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 120 6 131 135 102 45.0 1e-22 MKLKTLDQELSVCKVVSISDIDLNGKFFFIGKTDEEISLVCLTSDVPDNTTDRVDGWRTF RIEGVLDFSLIGILSEISKILAENKIGIFVVSTYNTDYILVKKENLQKAQQALKAAGYDV V >gi|301349795|gb|ADCQ01000055.1| GENE 14 11555 - 11725 75 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMKGSKKYLSQNLLSDFLAVFGPIPGGFSEEGFERFSLGFDWLKILSDKWCTDAKT >gi|301349795|gb|ADCQ01000055.1| GENE 15 11667 - 12677 600 336 aa, chain + ## HITS:1 COG:no KEGG:Tola_1326 NR:ns ## KEGG: Tola_1326 # Name: not_defined # Def: hypothetical protein # Organism: T.auensis # Pathway: not_defined # 55 333 53 338 341 276 51.0 1e-72 MGSTGSKYSATNGAQMQRRNFLSSIFAALFVAKTVNAEERKLSPVASEEHKTKFDENTLL DTIKDDPAFSGYSNLLFPRGRTAGLRLREASRLLPYLSYVMPKESAEVLNYMKDEVLKGK KIFYPLKTASNGRPVAGLFFFRGKPDAPFAIICPGGGFQYVGAIHEGFPIAKFLAGKGIN AFVIVYRDGSAQAACDDLAQGIDFIFDHAKELQVSTKNYSLWGGSAGARMAAYLGSYGAT EFGGKTKQRPSAVIMEYTGHTDISGTEPATFAVVGDQDGIASPWTMEQRINRLKAQGTPA EFRLIRGMPHGFGLGTGTPAEGWAQEALDFWLKNSK >gi|301349795|gb|ADCQ01000055.1| GENE 16 12690 - 13667 951 325 aa, chain + ## HITS:1 COG:YPO2806 KEGG:ns NR:ns ## COG: YPO2806 COG0667 # Protein_GI_number: 16123004 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Yersinia pestis # 1 311 1 309 329 305 50.0 8e-83 MKTRKLSEGLEVSDLGYGAMSLSHGYGEATDRKDAVKILRQALDCGYTYFDTAEVYGPYI NEEIVGEALKPFRDEVVISTKFGISFSEYTHGDIIPDARPEKIRQSVEGSLRRLQTETID LYFQHRIDPKVEPEVVAEVMGELIKEGKIRHWGVSVAPEEYIRRAHKVTPISAVQDRYSM MARRIEKLFPTLEELGIGFVAYSPLANGLLSGAYEKATNNKFEAVVDYRSRMPQFTPEAM KKNEELMAFLQKTAEEHRATMSQLSLAWMLGKHSWLTAIPSSRRLERIVENAGGAVVKLS AEEIKAIDEALDKLPKSDIFGVKNN >gi|301349795|gb|ADCQ01000055.1| GENE 17 13681 - 14523 1005 280 aa, chain + ## HITS:1 COG:YPO2805 KEGG:ns NR:ns ## COG: YPO2805 COG0656 # Protein_GI_number: 16123003 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Yersinia pestis # 6 277 20 291 297 358 61.0 7e-99 MLYKTLKNGVKMPMLGFGVFQVTDPEGCRKAVLCALENGYRSIDTAQAYGNEEAVGQAIE DSGIPRDELFITTKLWITDVYYEGAKKAFAASLEKLGLDYLDLYLIHQPYHDYYGAWRAM EEFLKEGRVRAIGVSNFDMGRIADLVAFNEVKPAVDQIECNIFNQRHSDEEYLNSKGIAM ESWTPFAEGKNDLFHNPVLLKIGEKYGKSIAQVVLRWQLQRGIICIPKSVNPDRIRQNID VFDFELTADDMAAINALDQKKTAFFDHNDPKMVEWLTKLH >gi|301349795|gb|ADCQ01000055.1| GENE 18 14538 - 15587 978 349 aa, chain + ## HITS:1 COG:no KEGG:YPDSF_1126 NR:ns ## KEGG: YPDSF_1126 # Name: not_defined # Def: hypothetical protein # Organism: Y.pestis_Pestoides # Pathway: not_defined # 5 346 13 353 357 364 51.0 2e-99 MKKTLLAVLLGSFALASFAQPITIEKQGAFSAGGTVIEAKKTFDPYHPEPDAMTLHGDHA NVIYQIPAHAKNGSLMFLHGAGQSMRTWQTTPDGREGFQSVFLRKGYPVYLIDQPRRGDA GRATVDGTIKASPDEQFWFGQFRMGLWPKFYDNSAFASQKDLNSFWRQMTPNTAPYNDKV IADAVTDALQKTEGTVLVTHSQGCGPGWLIGTEAGKNLKGIIAFEPGSGFIFPEGKVPAP IPNNSFFGPTKAVGVPLSEFKKLTRFPILIVYGDNIPKTEVKNPYQDYWRAASTMAQEFV NAVNAEGGHAKVLHLPDIGIKGNTHFPFSDKNSAEVAKVVEKWLSDNVK >gi|301349795|gb|ADCQ01000055.1| GENE 19 15664 - 18171 1808 835 aa, chain + ## HITS:1 COG:DRA0188 KEGG:ns NR:ns ## COG: DRA0188 COG0178 # Protein_GI_number: 15807854 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Deinococcus radiodurans # 5 831 96 921 922 487 36.0 1e-137 MKDDILVRGAKVHNLKNIDVDIPLNELVAISGLSGSGKSSLALGVLYAEGSRRYLEALSA YTRRRLTQTQDAKVDSVENIPAALALHQRPSTPDIRSTFGTLTELFNSVRLMFSRLGSHR CPNGHYLPPTPAVALGQKLKCPVCGVEFDAPSAEDFSFNSSGACPTCGGTGIAVTVNRAS LVPDESLSIDDSAVKPWGTLMWSLMTEVCKAMGVRTNVPFKDLTPEEKKIVYDGGAVKKH IVYTNKGSGQAVPLDFTYFNAVRTVENALSKVKDEKGMKRIEKFLTKGQCPACHGTRFNE RALSTKLMGKNIAEVCAMTLSELVVWVKKIPEQMPSEMKDMAQSIVNEFLRTAERLTNLG LSYLSLDRAGGTLSNGELQRVQISRAVRSDTTGVLYVLDEPSIGLHPYNVDGLMKIVREL VDRKNSVVLVDHDPRILMDADQLIEIGPGAGKEGGRIVTQGTPLEAEKNPHSLIGPYLSG KESLKVRTRATEENMFENGSVKIKTKPFYTVKALDVSIPKGRMIAVTGVSGSGKTSLVIE CLVPALQAVIRGSKLPEHVYSLEAKGIQSVKVIDSKPIGANVRSTVATYDGVFDDLRKLF ARTPDAKAKGLKAGDFSYNTGKLRCPVCDGTGIISMDVQFLPDVDTICPSCGGSRYGKEA YDILWKSKEKDSVSVSLPGVLKLTVEEAADLLHEETKIAKQLKILQDLGVSYLTLGEATP ALSGGEAQRLKLAYEMETPQQGSVFVFDEPTIGLHPQDVKKLILIFDHLIQLGATVIVIE HDLELITNCDYIIDMGPWGGTEGGRVVVEGAPEAVAACPESITGRYLKKVLSEDK >gi|301349795|gb|ADCQ01000055.1| GENE 20 18264 - 19718 1202 484 aa, chain + ## HITS:1 COG:RSc2338 KEGG:ns NR:ns ## COG: RSc2338 COG2256 # Protein_GI_number: 17547057 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Ralstonia solanacearum # 37 456 15 436 449 516 63.0 1e-146 METDLFGNPDSPDTIKNAAAEAAKATRKAAPKDQASPLAERLRPKTIDEVVGQKHLLGPG KPLRSAFENAHPHSMILWGPPGVGKTTLARLMADAFGLPFISISAVLGGVKDIRDAVEKA TANREKTGRSTVVFVDEVHRFSKSQQDAFLPHVESGLFTFIGATTENPSFEVISALLSRS TVYVLESLKEEDLEELLHRALEREYLGLKVNEEAEKILIGLADGDARRFLNALEVSATMA KDRGIKVIDEKFVRAALPATIRRFDKGGDNFYDQISALHKSVRGSDPDAALYWMCRMLDG GVDPLYIARRLMRMSIEDIGLADPRGMEITTNAVDIYERLGSPEGELALANAVVYLACAP KSVSVYKAFNKMRAFVKQDGTRPVPMHIRNAPTKLMQKVGNGAGYRYPPDEPGSFAAGVK YFPDDMDEIRVYKPSPRGLEIKIGEKLAQLHALNEEVRRSGDMPKGRSVGTKQASEPDPN IHTE >gi|301349795|gb|ADCQ01000055.1| GENE 21 19757 - 20683 799 308 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 307 1 304 308 312 53 5e-84 MAIRQSIKELIGNTPLVQLNRYAAKRGLGANILAKIEYFNPAGSVKDRVGFAMLDAAEKA GKLNSKTVIIEPTSGNTGIGLAAAAAARGLRIILTMPETMSVERRNLLKAYGAELVLTDG KKGMKGAITKAEELAKENPNSFIPGQFVNPVNPETHFKTTGPEIWKDTEGKVDIFVAGVG TGGTITGVGKYLKSQNPNIKIYAVEPDTSAVLSGEPSGPHKLQGIGAGFIPDTLDTKIID EIIKIGAQEAYEAGKALPKEEGFLVGISAGAALAAATQLAKLPENKGKNIVVLLPDSGDR YLSSEMFA >gi|301349795|gb|ADCQ01000055.1| GENE 22 20727 - 21518 335 263 aa, chain - ## HITS:1 COG:AGl761 KEGG:ns NR:ns ## COG: AGl761 COG1464 # Protein_GI_number: 15890496 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 263 14 259 259 263 54.0 2e-70 MLRRNILLTSLAVLIPNFVLASEQTKTLKIGVTAGLHAQILEQVLPIAKKNGLNIKIVEF QDYVQPNAALAAGDLDVNIFQTKPFLDAANRDRGYDLVPVGETITFPMAFYSKKYSNLSD LPNKSTLGIPNDPSQGGRALILLASQGLIKLKDSKNLLSSPLDIVSNPHHYNIIELEAAQ LPHSLSDLDAAAINGNYASAAGLNPSKDGILIEDPNGPYVNHIVVRAQDKNQPWVKPLIQ SYQQPQIHDFILKTFKGAVIPAF >gi|301349795|gb|ADCQ01000055.1| GENE 23 21560 - 21664 57 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLVVLVASECVDLIKHTLIVFFHTNHSIPYGSV >gi|301349795|gb|ADCQ01000055.1| GENE 24 22018 - 23319 1634 433 aa, chain + ## HITS:1 COG:RSc2337 KEGG:ns NR:ns ## COG: RSc2337 COG0172 # Protein_GI_number: 17547056 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 429 1 436 438 563 66.0 1e-160 MLDSNLLRKNLPEVVARLATRKFQFPTEKYEALEGERKAIQTETEELQARRNQVAKKIGA AKKAGQDATELLKEGAAIAEGLAALEGKNAAVKKALNDLLLTIPNLPDPSVPVGKDETEN VEVRRWGTPREFDFEIKDHVDVGGPLGLDFDVGAKLAGTRFCFMKGQVARLHRALAQFML DTHTQENGYTECYTPYIANQETLIGTGQLPKFEEDLFAAKKGGQEGEGEIFYLIPTSEVT LTNSVRGQMLKESDLPIKITAQTPCFRSEAGSYGKDTRGMIRQHQFEKVEMVRIVKPEES YKHLEEMVVCAEGILQKLGLPYRVITLCTGDMGFGSAKTYDLEVWIPAQNTYREISSVSN CEAFQARRMQTRFKNAQGKTEYVHTLNGSGLAVGRTLVAVLENYQNADGSVTVPEVLRPY MNGLAVLKPENQK >gi|301349795|gb|ADCQ01000055.1| GENE 25 23377 - 24384 878 335 aa, chain + ## HITS:1 COG:HP0723 KEGG:ns NR:ns ## COG: HP0723 COG0252 # Protein_GI_number: 15645344 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Helicobacter pylori 26695 # 1 332 1 327 330 275 46.0 6e-74 MKEDLPTIAILGTGGTIAGKAGSASATTGYVPGSATVEDLLASVPGLEDIANLTSVQVSN IGSEDMTDEIWACLVKETESQLKDPEVAGVVITHGTDTLEETAFMLNQVLKSEKPVVLVG SMRPATSISADGPMNLLNAAKVATTPEAKGKGVLVVLNDEIHGARDVIKTNTTNCDTFAS PRLGALGFITGGRVSFFKESTRPHTLKTPFTSELLSDHKHLPIVDIIYAHSNGDGRLIKA AIQSGAKGIIYAGMGNGSIHCKDLPELEKALEEGIPVVRASRCGSGEVVDSSPEWTEAGM INAGTLNPQKARVLLQLCLAAGYCHEKTAEVFLKA >gi|301349795|gb|ADCQ01000055.1| GENE 26 24695 - 26353 2082 552 aa, chain - ## HITS:1 COG:CAC3170 KEGG:ns NR:ns ## COG: CAC3170 COG0129 # Protein_GI_number: 15896418 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Clostridium acetobutylicum # 1 551 1 547 552 650 62.0 0 MRSDKIKVGPQAAPHRSLLYALGLTDEELKKPLIGIVSSQNDIVPGHMNLDKIVDAVKQG VALAGGVPIVFPAIAVCDGIAMGHEGMKYSLVSRELIADSTEAMAIAHAFDALVMVPNCD KNVPGLLMAAARLNIPTILVSGGAMSAGIIGKKKLSLVSAFEGVGAYKAGKIDAKKLTEI EQKCCPSCGSCSGMFTANSMNCLTEVLGMGLPGNGTIPAVQSARIRLAKQAGMKVMELLE KNIRPRDIMTYDAFLNAMTVDMALGCSTNSMLHLPAIAHECGYKLDMHLANEISEKTPNL CHLSPAGPHFIEELNEAGGIPAVMKELDKKGLLKTDLMTVTGKTVAENIADAENKDEEII RPIDKPYSETGGIAALFGNLAPEGSVVKRSAVAPEMLVHKGPARVFDSEEEAIAAIWGGK IKDGDVVVIRYEGPKGGPGMREMLSPTSAIMGAGLGSTVALITDGRFSGASRGAAIGHVS PEAALGGPIGLIEEGDIISINIPEHKLDLEVSDEVLEERRKNWKPRQPKITTGYLARYAK LVSSGTSGAVLS >gi|301349795|gb|ADCQ01000055.1| GENE 27 26406 - 26894 318 162 aa, chain - ## HITS:1 COG:XF0654 KEGG:ns NR:ns ## COG: XF0654 COG0791 # Protein_GI_number: 15837256 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Xylella fastidiosa 9a5c # 47 162 169 288 288 91 42.0 7e-19 MFERLMTRRKLIFLASVSSLLSGCSMFSSDRYNYQPVSYDNSAGSKILRTAMSQYGAKYK YGKASPSDGFDCSGLIFWAYGKHGITVPRHTAAQSKAGKWVAARNARQGDIVVFRIGRRL HTGLVADKGRFLHAPSSGGYVRMESLSGLYWKNKIVGYRRIV >gi|301349795|gb|ADCQ01000055.1| GENE 28 27249 - 29036 1955 595 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 89 592 1 477 484 246 35.0 1e-64 MIVRTVLSLSVSLAVAMTANAALKDGTYTEDALGHNSPMTVKVTIQGGKITAIDSSANME TRGVGKFALIKLGQEIIKKQSLGVDNVTGATVSSFALKGAVRKALQQAGATADELKALSK QVDAVPTAPLTINASVAIIGGGGTGLAAAVSALENGAKKVVILEKLGYLGGSTQVSGGAL NAVDDKRQKAQGIKDSIQTHYESTMKGGHNVGEPALVHYLTDNAYPTVEWMEKQGVRFKD QIGAATGSLGQRSHYGVEGSGWAYTHIFENVLKKHGDRVVVLTDTPATQILVKDGKVVGV KALRKGKQPITVDAPSVVLATGGFGANVEYRQKVNTGVWKSVKLDKNIGTTNINKAAQGD GLQLAEKVGADVIGLSDIQLHPAGTPGTGLMQDIITDGRNRLFVNTNGDRFVSEGAPRDT LCNAIFAQPGKTYWLVMNKLRFPDESKTNSFGVPMSDMLKLGRVVKANTLEELAKVMNVP YAHLKASVDEYNKAIENKGKPDKYGFIATNTDDAKMVEGPWYACKKVPTVHHTMGGVHIN TKAQVLGKDGKPIHGLYAAGEVTGGIHGANRLGGNAIADVFTFGRQAGASSAKNL >gi|301349795|gb|ADCQ01000055.1| GENE 29 29137 - 30591 878 484 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 25 481 32 477 484 253 37.0 6e-67 MRINTLNRRKFNHLAFGLICSLPFTHAAELESFEADIIVIGSGAAGLAAALTAADYGKSV IILEKMPVIGGNSLLSTGLINAPDPERQKLVGIEDSNELFFKQTYDAGHRSGNQELIKVM VENALPTVQWLEKYGIHFKEEVIQIYGGLWPRGHNPKVSHGRGYINFLSKACKDRGIPIK TNTQATAFLRGSGKRKNRITGVRAFVNNVPVEFKANCGVIIATGGFTANQKLCAQLDPRL QGMNYTGSPSATGDIFPAVKEIGGQLKDLKEIQCNLGPVGHFSHRSGYHTDVKRHILVNK NGRRFVAEDGLRDKLRDAVLSQPDGDVFIIVDSDGFQDLSSKFQQSGATSEALGYGWKAN SIKELAQKMNISPGNLEQTVDEYNRAVASKKDPFGREPWMLVKTINCPPFYASKARMAIH YTMGGIVIDTQARVLDGNNLPIEGLYAAGEATTGIHGTNRVGGNGILDAFVFGRIAGQSA ANQK >gi|301349795|gb|ADCQ01000055.1| GENE 30 30598 - 31260 608 220 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 26 214 17 205 210 145 42.0 4e-35 MTVILEATERRILQNPLENPEVLIRIVDDNQATCKSLQFFLEALGYEVRIWNDPELFLKE YKENEEDGCLLLDIRMPRISGLELHDILIKENFRLPIIFLTGHGDVEMAVDSVKKGAFNF LLKPSNEKKLTETIEAAVKLSIENHLKENNKTIYREVFDSLTPREKEVVRLVAQGKLNKV IAADLNITEKTVQQHRSVACHKLSVRNVAELVEFLKVLEG >gi|301349795|gb|ADCQ01000055.1| GENE 31 31244 - 33064 739 606 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 60 578 51 557 592 132 24.0 2e-30 MSKSSLVIHNFKLLRKQVSVFLIALSLSSPSIASEWKVKAQTVGESESIVETIAATLDHL RDSFPSERFLLDYSDNKEFKKTFSAQKGLLFITDALTFAELSQKFGAWAFAAMKHPLAKD AEHTSGAVFITKSDRSDISSLKDLESCSVVAAEPSFSPAYPMAIRELERFFGEKPLFKAA HLISSPVEQVVHEVLAGKADIGIIDSCLLEGMEERGNIPKGSIKVIGTKGGSDLKCHHST DLYPGWVFAAAYPRNKMDVSEVQGIANIVDALKSVPQLNATMEWTTPTDNSEILELQKSL DKLTNQRKTFRSFIEQYQYVIYSFLILLIGIISHSLYAEWLVRRRTKELRQTIQEKENLE KLISEEREKMAHLEKMGIVSQMSSLIAHELQQPLNAIVNYARGLRLLKEKGRLSEDKFQT AVAEISDQGLQAAAIVNKVRNYSKHPEAKKESINLISFLKKTAEKFCRIRNCTIPIEISG NRTVVVSADLLELELLIVNLLKNSCEALAEEDKSDSKIFIKVSESNNKAVITVYDTAPPL SKGEMKTLFTPGISSKKNGLGLGLSLCQKIAESHGGNLKAHQNDKNTLIFTLELPLVKGS NNDSHS >gi|301349795|gb|ADCQ01000055.1| GENE 32 33388 - 33744 455 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859322|gb|EFL82404.1| ## NR: gi|302859322|gb|EFL82404.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 102 1 102 118 209 100.0 6e-53 MTAPLGNVKASVPPEQLKAKMNPGDVSFLGFERKDNVFTVTFAWIDMIGGHHEHTFARGD IFADFNKVLKVFTDGGLPIDPAKADDFHMRLCQLSTVMVQEQAPAAKAEAKKEEAPAK >gi|301349795|gb|ADCQ01000055.1| GENE 33 33833 - 35302 1054 489 aa, chain - ## HITS:1 COG:ECs4383 KEGG:ns NR:ns ## COG: ECs4383 COG0635 # Protein_GI_number: 15833637 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 63 454 51 434 445 315 41.0 1e-85 MPSFETGVRLLKNILIKKRSYSAFFADETDALHKAFPAKATVHAGPFGIPMLWNSARNFL EKKSFEPRQTDGIAYVHIPFCESRCLFCMFYQNPYASEAADAYTNTLIKEFELWNQRATQ NSAPIKALYFGGGTPTALEPHNIKKILDAVRTNLPLAEDCEITFEGRLHGLTDEKLSACV EGGVNRLSIGVQTFNADIRKEMQRLNSPEYIIRRLEKISAIDNLAVVIDLLFGFPGQKGK VWTDDLKIASELPIDGVDCYQLNVFEKSPLNTRIKSGLFDPAATLAEAADMYAESVEHFS SHPNWHRLTNTHWARTPLERNLYNRLAKGPSDCLPFGCGAGGKLFGYSWMQERKLAKWSE MVEKGLKPVFVMMKPQEHWHLMRTLASSVESGPFNLKEIGDNFSVDIEKPLKPVMDQWIK AGLLEKSGDIYSPTVAGQFWYVTMAQLATEALTMAIAKEDSFKADPITQSVYSPNQAEAW LKTINKREE >gi|301349795|gb|ADCQ01000055.1| GENE 34 35539 - 35952 443 137 aa, chain + ## HITS:1 COG:MA0416 KEGG:ns NR:ns ## COG: MA0416 COG1917 # Protein_GI_number: 20089309 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Methanosarcina acetivorans str.C2A # 10 136 13 140 141 124 52.0 4e-29 MKEVPKLSDFPVGKPNDAYAKYFIGQSWLAPLTTEQVPTYNVTFEPRCRNNWHIHQAQKG GGQMLICVYGRGWVQLEGEPAHELKVGEVFNIPPNVKHWHGAAKDSWFQHLSLEVPGEGT SNEWLEPVTDEVYDKLP >gi|301349795|gb|ADCQ01000055.1| GENE 35 36028 - 36993 1053 321 aa, chain - ## HITS:1 COG:ECs3252 KEGG:ns NR:ns ## COG: ECs3252 COG0679 # Protein_GI_number: 15832506 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Escherichia coli O157:H7 # 9 312 8 308 314 280 54.0 3e-75 MFFNIIFNDIVPIFVVMALGYAGAKMNAFTPSQTQALNKVVLNFALPAALFVSITKATRA MLFEDLTLTLVSLIGIVALFFVCYWVCRKVFHHTAAEAAVCGLTAGSPTIGFLGFAVLDP IYGATTQTGLVVAIVAIVANAVIIPIGMYLMSLAGAMGSGNGSSSGTGSAILNAVKQPVV WCPTLAVVIVLLGIKLPVAVYPSFDLIAHANSGVAVFAAGLALATVKFSVNTEILWNAIF RVFITPLCIAIAAILCGLSGEKLSMLTMACALPPAFSGIIIGSRYNVYVQDGASILAVST LMFAFAAPFWIWFCPILQSWL >gi|301349795|gb|ADCQ01000055.1| GENE 36 37610 - 38341 1071 243 aa, chain + ## HITS:1 COG:VCA1013 KEGG:ns NR:ns ## COG: VCA1013 COG3314 # Protein_GI_number: 15601766 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 17 230 7 220 243 254 61.0 8e-68 MASSNLNDKKPELADDKEKKVTIGNYISLIMACVFFSGVCATNQWWGIFDFTTINGSFGK VVTAVSQNADGIHTAMANFRGKGGSGAIDGFMFALTLVPTVMFALAMITVFDHYGALKAA RQMLTPILRPLIGVPGGAGLALIASLQSTDGGAALTRQLKDDNVLTAKELNNFATFQMTA DALITNFLSSGAVLFTLLAADGKPAVPVSIGACLGILFLGKILAANIMRVIQMGGKINLK KSA >gi|301349795|gb|ADCQ01000055.1| GENE 37 38357 - 38830 664 157 aa, chain + ## HITS:1 COG:VCA1012 KEGG:ns NR:ns ## COG: VCA1012 COG0700 # Protein_GI_number: 15601765 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Vibrio cholerae # 6 152 7 153 155 149 61.0 1e-36 MATTSKKMMITDVFVNGAFQGWNIATHSTIPNVLMAFVIIKMLNISGALDFIGTCLGPVM AIFGLPGEAAMILLGGWMSMGGGVGVAVALFDKGAVDGTQLAIVIPAIYLMGSQVQYMGR CLGVIGIQGSDMFKIMAVPPIVALLSLWVMRLVVLGS >gi|301349795|gb|ADCQ01000055.1| GENE 38 38862 - 40007 1609 381 aa, chain + ## HITS:1 COG:no KEGG:VV2_1131 NR:ns ## KEGG: VV2_1131 # Name: not_defined # Def: isoaspartyl dipeptidase # Organism: V.vulnificus # Pathway: not_defined # 6 380 4 378 378 310 45.0 5e-83 MATAILFKNADLYAPEHKGIKQILTVNDKIIAVEDEISADLPGLEVIDLNGAIVTPGLID QHIHVTGGGGEGGPLTRAPELNFSELVEGGITSFVGVSGTDSETRPIEALMAKVRALTKE GATGWMWTSNYRYPPTTVTGDVRKDLLTIPECLGVKIAMGDHRCSFPTTQEVLRVLSDCR VGGMICGHDSYLHVHLGDLPIAFPAFMECVKMGMPIKHIRPTHVGRHPEVFAQAIAFTKA GGYIDITTSGGNYMGSAADAFVMALEEGAPIDRITFSSDGHGSMPRFDKNGEMIGLTVCK VSDNLKMLQELAGKIGLEKALLPLTRTIATALCLGNKGVIEAGKDADLLVMDKDLKPLHL FMKGRQVMKDSEVIVKGAFEE >gi|301349795|gb|ADCQ01000055.1| GENE 39 40294 - 46734 2572 2146 aa, chain + ## HITS:1 COG:YPO1004_2 KEGG:ns NR:ns ## COG: YPO1004_2 COG3468 # Protein_GI_number: 16121306 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Yersinia pestis # 1562 2146 7 616 616 399 40.0 1e-110 MTKTSTTRVHNRKTVNLRKKLLCVMAVSAASLLSSSALANTETISVPQIVNETTLQEVGK NLASYNEFFLTELGAIWVDGVQLDLSNVKLTGNHVRLQVGGTDFPYQNAQAISSGGSLTV GSITATGTNIIHVIGTTNRDSTLTVKGDINASNLDVWIDGQNTNTSTKVSVEGNFTETED SKVGVQYNGILEVEGGLTVNISNEGSFYIANSKNVPVSLKVGKDFTFSNHITKNNKFDPN DLFFDASIGTAAAEIGGNFILQGVNDAPTTYFQIANSKAVGVKAANIQVIGSDNNTTSLL FSRFSIVNVGSGNGVIELKPDGNNSKVQLFIGESDYKAKSVLASELKMNQSEGSDGVSVY LNNNAVDLKQAFVLVPKITGHGQIENLGGYNVLRSAESTYTGKTLVTDGTLVLIAPTGAG QSNIEVNTEAGNTSKGLYLQFQSDAAPIENKISGDGVIRVAGEVSVKSSDISDYHGEWDV LGKLKTVDGSFTTSSQWGTGNVNIEPQGSVVVTNNSNGSLFVFDNTLSGSGTLLVNFSGS GNGTDLYTPTFKIQQGTTSGFTGMVDLAGEKNKKVVYILDSDELSTSGIRVSDNSVLSVG RDDSSKETFTLGKLDISGGELNIGDIQTGSPTSNKTIRVTKKLNADGEGTVRIDTSAGFI NAVPTTESELETLPLMEQDDGLQKTSMMLVNAKGAEIIGSGGGLSLVDQNGKVLSNALSS KVIQNGLHVANAGYDWKLTTSGSEEEASGLYLNYSLTQVELLGQGDSALILYATPGLPEN SLTNDLSAKVVGSGDLEISAVGETVSLSNPENTYTGGTFVTSDSTLKLGADSALGATKEV NLAERAILNLNDHSQEIGKLTVATDAQVDMADSSQLTVKEGGTVSAGGLKGSGNLIVQGG TLEISGANADFHASTSIKPNAAVEINSVLGLGDNEVQDNGTLTLKNIEKPSDGGNPLHYE TYLTYDEFANTLIGSGKLNAENSSFALTGKNSDFNGTIEVGADSDIAVFKNSALGEAKIE NNGKLDLLFDEEYSYIDNFLSGNGTTVVHGYATVSNNSVQNNSYTGDWLVLGKLSSDKGA HTSQELWGSGKTELNWGNIEVFVSDDGFTYDNSLTGHGALWIYSDPNSKGINQEFKFDNN LKNNQDFIGTMVLDGKNGGNLFYVLNHEDNLGSLGVVVKGGAELKTDGTSDPATLESLMI SGGSIDFEKEIQFSDTESSAQILIDGDVLSGLDVSSTGTVKVKMGDQITLPEIPDTESNN AIMEHDDYIEKAPRIPLIQLKDENKSVVNGYAGGIELFVNGQSALSPDEGGSLSTSVKTV SILQGSLRTEVAKGFYGFQLSTLDSSKDSNGLYLTYRLNEVQLLGKDDNALTLLPSESTA SGGKDLRAKVTGDGDLRIDAPNDYISLSNPNNDYTGKTFVDPDSTLKLLADSALGSTSEV LLEENATLDLANTSQTVGRLNAGENAKVHFGEPKESDDRLDQKSSQLTIREGGQIVSADT LTGSGTLTVESGTLDIEASNPNLHTNNVLFTEAKVNMKSSSGLGDGTIELDGELNLNGVN DGPIQNQLSGMGRLNLFSSDLALTADNSGFEGDIQIDPQSELTVSNASNLGKAAVSNNGY LIINNSDDWTLSNDITGSGSVRKEGHGTLSITNDTLWNGKTEINEGELHLGTPNSVVTSN SSSVVIGQNGTLSGFAVLKGDLVHAGTLNIGTQDSEPSVFLVEGNYIGNNGLINFKGYLE GDSSPVDKLIVRGSTSGTSRVVVTNMGAMGGRTSKGIELIHVDGQSDGTFIQEGRIVAGA FEYRLVRGEGANSNHWYLKTEDDQVRPEIGSYIANEETVQTSFVTRQLDRGGKTEYTDFF TGEKKSTSLWLRQVGRYNSWQDSSGNTKTRSNRYISQIGGDIAAWTDAENQQALHLGLMA GYAHSRAISHSVVNGQRSIGKTDGYGLGMYATWFEDEINQQGAYVDAWFNYSWFKSSVNG NDNPKEKYRSRGLTGSLEAGYTQKLGSNNYGDWYVQPQAQVIWMGVTTPNRTEKNGTHVR FNGHGNIQSRIGTRFYIQGRVPGSDQGVGSFQLYTDVNWIHNTRKFGVTMNQDGFTQAGA SNLAELKFGGERKVGKNLHLWGNVGSRFGSHDYRELSATIGAKFVF >gi|301349795|gb|ADCQ01000055.1| GENE 40 46993 - 48792 1275 599 aa, chain + ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 25 469 19 458 489 82 22.0 2e-15 MNLRLTALSALVGISLAAFALPSNACFTVIVGKKVSSTGEILVGHNEDNEMRIITSQYWV DPAMHEDGELIEFEPAAAKIPQVKKTLGFWWSQTLAPTGYSFSDGFVNEKGVVVVSNNCN QTIEKGEKINEGGIGYGIRRLIAERAVSARDGVNLAIDLVKKYGYFQEGRTYTIADANEA WQLVLLRGSRYVARKVQDDEIAFLANAINITNIDLKDTANVIASPDLIENAIKKGTYKPK DPKNFSDFNLRKAYQLDERTSADWTKERVRVLLNYLTGKDFKDEHAFPMSMKLKNKVSAE QVRQMISGHSKHEVRDSGWYHQGMNDICNIGTYDSVVYVLRPNPLFTLAWRTNGRPSQQF SYPQYPLAGAAIGQNFMDPKTATTAQFHATPEQLSYRADRPLYTFLAMQNFLDWQHQDYP IFAKNKRAFEKQAAAEVQKADKEARMLYRVDPGKAKAFLHEFNNYSFHNVLHATEQELHE LHHLPIIINSKELSQSSDGTFTVTALSTPQVHMTRVDKEATRFGSPFSNADLEVNRKMPK PLKVEFMDVNKDGLKDAVFTFPIKTAVAFTVPDVDTELYLWTKVGKKQLAGYDIVKIKK >gi|301349795|gb|ADCQ01000055.1| GENE 41 48867 - 49649 483 260 aa, chain + ## HITS:1 COG:no KEGG:Tola_1162 NR:ns ## KEGG: Tola_1162 # Name: not_defined # Def: hypothetical protein # Organism: T.auensis # Pathway: not_defined # 6 247 2 246 257 175 38.0 1e-42 MKNHSLFEKYRSVIVSFRDVKDRKDLLLEDSGEERIYYAPFDYVNPEARLFIVGITPGEI QMNNMLVEAARLIHQGLSDDEVLRRCKAVGSFSGPMRKNLVELMDEAGIAEFLDVETTAQ LFSNKQELVNLTSCIRYPTFAVKNGKESNFNAEIKQGTELFEFASTLTLEELSKAPNAVL LPLGPKVQHYLEKVVKGTQFENRLLPELPHPSGANAERIAYFLGRKNKETLSSRTNPEKL DNSKKNIKKILRSLKTKGSK >gi|301349795|gb|ADCQ01000055.1| GENE 42 49790 - 50143 297 117 aa, chain - ## HITS:1 COG:YPO2596 KEGG:ns NR:ns ## COG: YPO2596 COG0239 # Protein_GI_number: 16122809 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Yersinia pestis # 4 116 6 123 127 69 39.0 1e-12 MIYLSVMIGGGLGSLLRFLISSFGFLPFATVFINIVGSFILGFLTFFFLDRPEVPPDLRF GLTAGFCGGFTTFSTFSVEVYAMVLDNHIGQAAFYVLASFLGGLLAVALGAFLAKNC >gi|301349795|gb|ADCQ01000055.1| GENE 43 50629 - 51843 1799 404 aa, chain + ## HITS:1 COG:PA5479 KEGG:ns NR:ns ## COG: PA5479 COG1301 # Protein_GI_number: 15600672 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Pseudomonas aeruginosa # 2 388 11 413 444 265 39.0 1e-70 MQMMYGLVLGVIVGTMVSSEFGATYLQPLGQLFIRLIRMVVVPLVVATLIAGSAGLGDAS KIGKIAVKTILFFAITTAIAVTIGLIVANFMEPGTGLTISVEGLKAKAAAAPPLSKVLLE IVPINPIEAFAKGNMLQVIFFSIFFGFCLSLMGDSVRMVTDFFQKVGDVMIRMTNYVMLY APIGVFGLIAYTVTRHGLAVLLPLGKLILTAFIATLIFVCITYLPIIKLIGMKISDYLKG AFEPWLIAFTTCSSAAALAVNLEASRKMGASKAIASFAIPLGNTINMNGTSIYMGVTAVF AAEVFGIDLTLAQQFQIVLMGVLAAVGTAGVPGAGLIMTTLVFTEVGIPLEAVALIAGID RILDMIRTSVNVLGDSLTALVVSKSEGVLGTELMDQDTVVKEQL >gi|301349795|gb|ADCQ01000055.1| GENE 44 51982 - 52182 175 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859334|gb|EFL82416.1| ## NR: gi|302859334|gb|EFL82416.1| hypothetical protein HMPREF0189_01658 [Burkholderiales bacterium 1_1_47] # 1 66 1 66 66 95 100.0 9e-19 MFPSFWAQFHDFFETALYWFASTFNLTAEFAKIRGGLDEFFWAMESIFEGLFHYIPSLLS GGFLGY >gi|301349795|gb|ADCQ01000055.1| GENE 45 52237 - 52752 614 171 aa, chain - ## HITS:1 COG:CAC0327 KEGG:ns NR:ns ## COG: CAC0327 COG1225 # Protein_GI_number: 15893619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Clostridium acetobutylicum # 23 168 6 151 151 152 54.0 2e-37 MCHLTGKSEPVAPSEDECKAVVGEPAPDFELESDLGGKARLSDLRGKKVVLYFYPKDNTS GCTMQAVNFQAALDKFEKAGYVVIGVSRDSIKSHTNFRNKQGLKFPLLSDADSEVSKLYG VLKLKSMYGRKYLGIVRSTFVIDENGILTAEFRDVKAKTSVADLEKALGIS >gi|301349795|gb|ADCQ01000055.1| GENE 46 52765 - 53007 262 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859336|gb|EFL82418.1| ## NR: gi|302859336|gb|EFL82418.1| putative SpoVT / AbrB like domain protein [Burkholderiales bacterium 1_1_47] # 1 80 1 80 80 147 100.0 2e-34 MIHPSVTDTADVNEFGAVRIPEEILRKLGAGVGDLISFVKDGDSIRLVVKKQNSIQKDQP KAATGLTKPLRIPTMQFATD >gi|301349795|gb|ADCQ01000055.1| GENE 47 53136 - 54077 827 313 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859337|gb|EFL82419.1| ## NR: gi|302859337|gb|EFL82419.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 313 1 313 313 537 100.0 1e-151 MRIILALICFIAMFMHAFFGYYLYVRGESVFEPDNMIVAIQKKVAVNTNKLSIFQKKSDH IDDPVVKEQAKNAAFYEKPDDGLVKTEEGTEQESAKTELNVSPNSSSSSSATEPTVPAVT TAAPSPVPTESKLADEPKAKEETHYLPFSTGWSGFLQVENALITVILFLLGFSICCVKGR GPASRWVFGFNLIFWSALGGSIYFFLPANTPLVIFNIKFAFPQWYLVISMCSLAALLSLL LFFNAFRKPIDAAARPVKKEPEKAPKAEPAAQAEAPKPSRFGFGAKKEEKVEPAATIIPV PPEQTHGPEKRPE >gi|301349795|gb|ADCQ01000055.1| GENE 48 54230 - 54646 465 138 aa, chain + ## HITS:1 COG:AF1764 KEGG:ns NR:ns ## COG: AF1764 COG2131 # Protein_GI_number: 11499353 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Archaeoglobus fulgidus # 7 136 7 144 157 94 36.0 5e-20 MDIKKDNEMYMTIAQIAAQRSYAKRLKVGCVIVKNHSIISFGWNGMPTGYDNCCEYEVDG KLVTRPEVQHAELNAIAKLAQNGYSSNGAKIFITHSPCIHCSLLIQKCGINEVYYHENYR DDAGIQFLKKAGIKVEQL >gi|301349795|gb|ADCQ01000055.1| GENE 49 54835 - 55209 541 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859339|gb|EFL82421.1| ## NR: gi|302859339|gb|EFL82421.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 124 4 127 127 208 100.0 7e-53 MGKAEWSVTVSDELNDAVMAYLAKSGQGVEGLSNLVENAVGKFVKDPRALDKESDVTEGE ISDMINAAVQRTKEKYSSLTEGEIREIIADAVQKTKEKYSGITAGQFNDMMNCGLDALKK KLDK >gi|301349795|gb|ADCQ01000055.1| GENE 50 55322 - 55969 609 215 aa, chain - ## HITS:1 COG:RSc1042 KEGG:ns NR:ns ## COG: RSc1042 COG0546 # Protein_GI_number: 17545761 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Ralstonia solanacearum # 1 204 8 211 219 144 42.0 9e-35 MYVFDWDGTLMDTTRLIMQGYQHASKALGYPVPSDELVLSTIGLNRSDSIALCCCDCPKG RYSEFIQAYMDWYAKKEAQLELVPGFRQLLENMHKDGKRLAIATGKSREGMKRVFNATGI EHLFECVQTADTNFSKPNPGMLLAIADESGLETKDIVMVGDAVLDMQMATNAGSDSVAVS YGASPKERLLETASLGVADNVPQLAAILGLEKYLS >gi|301349795|gb|ADCQ01000055.1| GENE 51 55987 - 57447 1591 486 aa, chain - ## HITS:1 COG:RSc2197 KEGG:ns NR:ns ## COG: RSc2197 COG1530 # Protein_GI_number: 17546916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Ralstonia solanacearum # 2 486 3 489 489 526 58.0 1e-149 MQEILINNAVHETRVAVLEDGVLQELRIERNADVSLIGNIYLGVVGKVLPGMQSAFVEIG LPRAAFLHVSDMRQAHQENGGTLPIERLLHDGQVVLVQVAKDPIGTKGARLTTEISLAGR LLVYLPYTSHIGVSQKIEDEAERERLKEAVAKLTEEQGIPKGGFIVRTSGEDAKPEDFVN DMKYLEKLWLDIEAKTHIAGAPCLLYSDVSISQRVLRDIVTEQTGKIIVDNPEVFEELQR FGKKFVPEAVELLELYNSERPLFDQYNLEKEIEASLSRRVDLKSGGYLIIDQTEAMTTID VNTGAFVGRRDFSDTIYKTNLEASQAIARQLRLRNLGGIIIVDFIDMDSKEHEQGVLTEL RKAVARDRNRISISEFTSLGLVQITRKRTRESLAHTLCETCPTCGGRGEIKTARTVCYEI LREVVREYHQFKDAKEFRILASQSVIDLFLDEESEALALVGDSIQKPITLSVETEYNQEQ YDVLVL >gi|301349795|gb|ADCQ01000055.1| GENE 52 57577 - 59040 1059 487 aa, chain + ## HITS:1 COG:no KEGG:CAP2UW1_0180 NR:ns ## KEGG: CAP2UW1_0180 # Name: not_defined # Def: hypothetical protein # Organism: A.phosphatis # Pathway: not_defined # 18 486 3 477 483 164 29.0 1e-38 MAFFNFGSRTDLSSPFTEEQARLLTWTKVLEEEAVKRRKITISELKEVTARCAREVGEQA DFKKLLLTRAEGVLDLLRSKSAVSLKKPQGIPYLLIGSVFAVLAFVGGVLTNEFSVTNNR INLLSPPLLGVIAWNLIVYCWIAIAVLFNRGKSPVGLIRRFFAGALLKLQTRGSHGQQAL ITFYSKWTEAEMPLLRGRIAEILHFSAALFGLGLIASIGIHGWGTEYTVGWESTWLSDKP SAVLTFINLFYGMIPVNSDLFNQLTPQVIESMNFGSGHGQNAAPWLLQLFYIISLVVVVP RILLGLYALAKTQYIENHFPVDLESVYYSNILRQWRGQTMLIQIIPFSYPLTEKVKDGIQ KFASELHPENSRCIFSAAQHEDTKLPEIPAGEQTEVVAVFAMTSTPETEVQGRFIAELKE KAQASKALLRIVVDTSGFLARFANTPQRIAERKKNWSNFLTPYGVSFAFVNLTDADSKDA AAQFEQA >gi|301349795|gb|ADCQ01000055.1| GENE 53 59060 - 60514 1569 484 aa, chain + ## HITS:1 COG:no KEGG:CAP2UW1_0179 NR:ns ## KEGG: CAP2UW1_0179 # Name: not_defined # Def: GTP-binding protein HSR1-related # Organism: A.phosphatis # Pathway: not_defined # 1 440 1 437 484 368 44.0 1e-100 MNKDPQKINLSLVSHTNVGKTTLARTLLGRDIGEVGDRSHVTIEPEDYVLLRAPDDSELI LWDTPGFGDSVRLAERLKARSNPIGWFTSEIWDRLTDKSLWLNQQAIKHVRDKSLVILYL VNASESPEAVPYVKAEMDILAWVNKPVIVLLNQMGEARPPEEEKAEVELWGDYLKPYSFV KAVMPMDAFARCWVQEYELWKEIESCLSDADKPTFASLHATWIRQKQALYASSLEAMAAY MVKVANDKEVLASQSLIDRLRSIGRSLGFIKKDLHGAMEDAQVALSTRAADWLCTLTQRL ININGLEGSGTKAEILRRMRSDWETQATIDPKAASLLGAVAGGAVSGIAADIATGGATLG LGALGGAIVGALGGAGAAAAYNVQKGHKENIITWSPASMEGFLLDTVLLYLAVAHFGRGR GQWEDSESPAFWKKLAEDIIKAQNIDFKALKEKAADADQLRGEYTKILDKTLREIFKSLY GVTI >gi|301349795|gb|ADCQ01000055.1| GENE 54 60938 - 62587 1980 549 aa, chain + ## HITS:1 COG:YPO1511 KEGG:ns NR:ns ## COG: YPO1511 COG0281 # Protein_GI_number: 16121784 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Yersinia pestis # 14 546 20 560 565 437 43.0 1e-122 MTDIKDTTLRGVNLLRNPWFNKSSAFTEKERDELGLRGLLPPRVSTFDEQVTRLKGIIDT YEKPINKYIVLEGAHNSDECLYFELLVRYIDQFLPIVYTPTVGQACLQYSHIFRYARGLY VSSEDKGRVRQLVANVPHKDVDIIVVTDGQRILGLGDLGVNGMGIPVGKLALYTACAGVN PQKTLPVCIDVGTNNEELLNDPLYMGLRQKRITGPEYDALIAEFVDAVRERWPNVVIQFE DFHNSHAYDLLDQYKDKVPCFNDDIQGTASVVVTGMFSAMRALKQQLKDQKVLFLGAGSA ATGIAHLIADAMVEEGLTREEALARIKLFDSKGLVTKKRTAPLTPAKMPFAAEDAPAETF LEAIREIKPTAIIGVSAQGGAFTKECLEEMAKINERPIIFALSNPTSKAECTAEEAYTYT DGRCLFACGSPFKPVEYKGKTFVPRQGNNHYVFPGIGLGAIFSRAKLIPNEVFLVAAKVL ADMVKPEDLERGSLYPALSEVREISAEIGAAVAGYIFDKNLAEIEKPADLKKAVKDAMWD PKHAHFIQE >gi|301349795|gb|ADCQ01000055.1| GENE 55 62685 - 63356 829 223 aa, chain - ## HITS:1 COG:RSc2344 KEGG:ns NR:ns ## COG: RSc2344 COG2860 # Protein_GI_number: 17547063 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Ralstonia solanacearum # 16 209 14 204 207 166 43.0 3e-41 MEMDVRALNALIPVFDFVGIVAFALSGVFEGIKRRIDPVGVFIVAFSTAFGGGMLRDILI DRRPFYWIDHEAYVVATFIICMAAPFIYKFFQKTKHAHDWYIFADAIGLGIFCISGTSLS LAAGVPWLSSVIIGCITGVFGGLMRDCFLNQMPAVVADRQPYAVVGFIGCWFYIMLLELK VPVDAALWAGFIFITALRMACVSFKWKISYFLKEDQEKTAQDK >gi|301349795|gb|ADCQ01000055.1| GENE 56 63584 - 63904 234 106 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859346|gb|EFL82428.1| ## NR: gi|302859346|gb|EFL82428.1| probable Rhs-family protein [Burkholderiales bacterium 1_1_47] # 1 106 1 106 106 163 100.0 4e-39 MDTKAYLYRQEAMKRWILLFIVSLFSLFVLGTYAIAAERYYDESGRYMGRMDDSGRMYDK SGRYQGRVSEDGRFYDNSGRYQGRQSSDGRYYDNSGRYQGRIQNND >gi|301349795|gb|ADCQ01000055.1| GENE 57 64244 - 65434 1238 396 aa, chain + ## HITS:1 COG:AGl2386 KEGG:ns NR:ns ## COG: AGl2386 COG1473 # Protein_GI_number: 15891305 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 396 44 430 430 303 41.0 3e-82 MPIIIKPSQLEESVKLGAQFRHCIHEEPEIGLYLPKTQEKIVNALKSFGIKEISTFVGGA NVTGVVAVIEGSRPGKTIGLRADSDALPLEEKTGVEWSSKVPMAMHACGHDGHVGTLLAA VHYINQHRDFAGRLVAIFQPGEEGFAGGRYMIEDGLVQKFGIDEFYALHAEPMLPVGCVG FIPGFATANADIFKITFTGVGGHGSRPHLTRDPLVAACECVLSLQTIVSRSVDPNQTAVV SAGCISCGNEKGSSVVQKTATIVGTTRSFEKEVQDIIIQRMQQIVDGTALSNDMKGKLEY TKLYPAMFNSPEHVEKAKALLEEALGLDKVKLMIRRAGGEDFSFMLQAKPGCLFRLGVQD ETHNASVHNPEFDFNDKAIATGAACLLTIALNRAAS >gi|301349795|gb|ADCQ01000055.1| GENE 58 65514 - 66443 649 309 aa, chain + ## HITS:1 COG:MJ0531 KEGG:ns NR:ns ## COG: MJ0531 COG0589 # Protein_GI_number: 15668711 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Methanococcus jannaschii # 2 138 28 165 170 66 34.0 7e-11 MKVLLPIDGSIYSDRAVEYICEHSSLRAKTDTVYLLNVQKKLPSEFASKIPNSEEILDEA AKKILKPAKKALEAAGYKVKMKVAYGKATNRIVEYAQEIPATLIVMGSHGHTPVKGILLG SKTSSVLASTSIPLLVVRHKFYQKPGRTEVGVCLDGSEYSPAVLTFIKRRLPLFAKDARF HLINVASPQNGLLIPEVSAFGAPALSSEEFEKEQREPFFKIAKPFENYMQEKGHEVVEAL LTGDPAAQISMYAQEHNLSLMVMGTHGGSSLRIMMLGSVTMSVASQTKLPMLLVHHDDPT LLRDLSKAE >gi|301349795|gb|ADCQ01000055.1| GENE 59 66481 - 67365 707 294 aa, chain - ## HITS:1 COG:ECs4821 KEGG:ns NR:ns ## COG: ECs4821 COG1526 # Protein_GI_number: 15834075 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Escherichia coli O157:H7 # 52 293 35 277 277 266 53.0 2e-71 MNRIYSLALTAIGGCRLIFEVMATEEDLPVVLPPTYTRQKVYRWPSGETVDDAIADEVPI SITYNGISHVVMMASPELLEEFAVGFSLSERIIPDISHIYDIQVKEGCGNGLVVEMEISP RCFFKLKEHRRSMVGRTGCGICGVESLKDVELKPEPLEHTYQFDMNFYQPAMKYFEQVQK VGQVTGSTHAMLAFTPDGEFLGGTEDVGRHVALDKLIGMRAMKKWGPTVVFLSSRASYEM VQKAAVTGIEILFAISAPTNRALRLAKKCDLTLCAFCRDNRANIYNAPERLLNL >gi|301349795|gb|ADCQ01000055.1| GENE 60 67307 - 67849 350 180 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859350|gb|EFL82432.1| ## NR: gi|302859350|gb|EFL82432.1| UmuD protein [Burkholderiales bacterium 1_1_47] # 1 180 11 190 190 349 100.0 5e-95 MKESPTTVTKKQGWGGKRAGSGRKPGPYAGTSKVTTIVLTAALIEKLHKLGGSSWVREQI IKSKDDLLPAEKPESLASLTSIGSYFNSTEEDPLSACLVRNPEETVFCIAEDDTMKDSGI DFGDLLIVDRSADPQNGSMVVVHTADGYSIRKFLPASEVPQGEPNLFVSPDSNWRLPSDF >gi|301349795|gb|ADCQ01000055.1| GENE 61 67929 - 68519 465 196 aa, chain - ## HITS:1 COG:NMA1714 KEGG:ns NR:ns ## COG: NMA1714 COG0847 # Protein_GI_number: 15794607 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Neisseria meningitidis Z2491 # 23 185 4 169 244 154 47.0 7e-38 MDQYKEGQFRMDFENTGRANRKRRIFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFH AFINPQRKVPWFVTRIHGLNNEFLDDKPIFSDIGRDLLLFLEGSELWAHNMSFDAGMLNA EFARNRLPTLEKVDCRLNCTLQLARSTFPGQKNSLDALLDRFAIDRSERRLHGAMIDTRL LVKVYQNLVSYRTKTS >gi|301349795|gb|ADCQ01000055.1| GENE 62 68540 - 68935 272 131 aa, chain - ## HITS:1 COG:PA3689 KEGG:ns NR:ns ## COG: PA3689 COG0789 # Protein_GI_number: 15598885 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 1 131 1 129 156 104 44.0 4e-23 MRISELAKKAGCTVESIRFYENHDLIPCPPRTESNYRVYGPAHLSRLLFIRHCRSLDLSL NEIKTLADVIENSEKGELIRAHTIVEEHLKAIDQKIEDLNHLRDQLNSLHSRCHGEDHDH GRCGLIEELTK >gi|301349795|gb|ADCQ01000055.1| GENE 63 69020 - 71716 2813 898 aa, chain + ## HITS:1 COG:PA3690 KEGG:ns NR:ns ## COG: PA3690 COG2217 # Protein_GI_number: 15598886 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Pseudomonas aeruginosa # 201 897 44 739 740 697 55.0 0 MSLTNTDNKTAFPSDGKKKAVSQASEKSTPHEHEHGCCYHHEADHAEKSCGCGHHHGAEH CGCKHEDHDEEHHCCCAHDHEEKHEMCCHDHGEEGHDHCCEHGHTHEEGHHHDHDSCCCG HDHEHVENSMDTDWDVSGVDPSQYRLLFSTLGAIAGVKDVGLNPDGLKIIHTPEALPAIK QAFDANNLKLKMRTNEGKETTQIRIQQMDCPTEEGLIRKKLNGMKGVSGLQFNLMNRVLT VSYPKGMLPEIVAAIKSLDYTPEVLEAHEKPKLSEFKPTKIAWWKYILGIVIAAGSEACE YLSMPEWLSIALAVAAIALVGLGTYKKGFIAVRNLNFNMNALMAVAVTGAVLIGSWPEAA MVMVLFELSEAIEQLSLDRARGAIRSLLSLAPQTARVERDGTFVEVPAKDIKIGEVVRVV PGERLPVDGVVLSGQTSIDQSPITGESMPVEKKPEDKVFAGTINKNGTITYRAESDIDNS MPARIISAIESAQSSRAPTQRFVDSFAKVYTPTVFLIAVLTAVIPPLFVGGDWLDWLYKG LTLLVIACPCALVISTPVTIVSGLATAARRGILIKGGVYLEKGRSLQSIAFDKTGTLTKG KPAVITFENAGAGLTDEEILDLATALAVRNDHPVSKAVSDYSAQQKPTAQKEVHGFYAAP GQGVIGEIDGTEYYLGNIKGLDKFYLNGPAVRAKVSELADHGYTPLIFASAKKVLAYFGV ADSIKENAPEVIGQLKGLGVKTIMLTGDNEKAARQIAEKVGVDRAKGNLLPEDKQSLVDS IAKREVIGMVGDGINDAPALARADIGFAMGAAGTDTAIETADVALMDDDLRKLPEFIKLS KKTFRLLVENIVIALSIKLIFFVLTLAGIGTMWMAVFADTGTCLIVVANGLRMLRWRG >gi|301349795|gb|ADCQ01000055.1| GENE 64 72236 - 72562 561 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859355|gb|EFL82437.1| ## NR: gi|302859355|gb|EFL82437.1| FMN-binding domain protein [Burkholderiales bacterium 1_1_47] # 1 95 1 95 108 127 100.0 2e-28 MRIVKLSAAILAALFLSATAAAATITQEGSGIGKDGEIKVVFEDGKIKNVDILKQQENPV LSQKVFTDLKDEIVKTDSTELDVIAGAIYSSLGRIASQQAAQVAQAAK >gi|301349795|gb|ADCQ01000055.1| GENE 65 72626 - 73093 583 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859356|gb|EFL82438.1| ## NR: gi|302859356|gb|EFL82438.1| hypothetical protein HMPREF0189_01680 [Burkholderiales bacterium 1_1_47] # 1 155 14 168 168 296 100.0 3e-79 MTITLKKNSVDVRVELRRNDSDFIGDDRAYYTYFFSKAGCFGSAKVTEKEVYPIDCESFT TKERENFKDALASLQPDILKLASFLNKENENKGDLESTLDLQWALAKRGRPSLDDKPLIR TTIMLTEEDKEKLKVLGGSSWIRNQIRMARIGEIQ >gi|301349795|gb|ADCQ01000055.1| GENE 66 73354 - 74331 731 325 aa, chain + ## HITS:1 COG:CAC3454 KEGG:ns NR:ns ## COG: CAC3454 COG0042 # Protein_GI_number: 15896694 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Clostridium acetobutylicum # 9 308 6 304 311 223 37.0 3e-58 MNGQLLAAAPMEGLTTAVFRRLHHQYFGGTDLYYIPFITPTVEPKFTDRHLKELSPEVNA GIPVVPQLLSNRSADFIWAAKALQDLGYKEVNLNLGCPSGTVVAKGKGSGFLRDLYALER FLDEIFSAGIDIPISIKTRLGWANTEEFGDILNLYKKYPLSLLIVHMRLKTDQYKGEVRK EALLEHLDEIPFPLGVNGDMITTADMIDFSKTFRDPKMLMVGRALMADPALFRKYKGGPA ASLEEIKNFTTALFDAYTEAFQNRRNAMMRMKEFWFFQANLFEENPKAFKNIFKSKTEED FLAAIEEIEAGRPLTDARFGWKKPL >gi|301349795|gb|ADCQ01000055.1| GENE 67 74349 - 75221 577 290 aa, chain - ## HITS:1 COG:MA0889 KEGG:ns NR:ns ## COG: MA0889 COG0581 # Protein_GI_number: 20089773 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Methanosarcina acetivorans str.C2A # 9 288 26 304 307 223 47.0 5e-58 MNLSITLRNRRTYKEYAGLFMIKSGAWIMVALFLSSLGYIAYHGAGTLSPSFLSTFPEKM MEEGGILPCIIGTAILSIGAMAVALPLGIACAVWLNEYAKEGPLKKLITLAVANLAGVPS IVFGLFGLAFFVTVCGLGVSAIAGILTLAVLTLPIVINTVRETLSQIPNSWRESSLALGA SKTQTVLRTVLPAALPGILTGAILGLARAAGETSAIMFTAAVVSTTNLPNSPFAAVMSLP YHIYVLATTGMNPDKAVPIQCATALVLLMTVFALNLMAFYIRQKSSKRPA >gi|301349795|gb|ADCQ01000055.1| GENE 68 75235 - 76116 395 293 aa, chain - ## HITS:1 COG:MA0888 KEGG:ns NR:ns ## COG: MA0888 COG0573 # Protein_GI_number: 20089772 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Methanosarcina acetivorans str.C2A # 3 290 4 294 296 241 49.0 1e-63 MKRTIKDFIFEKSLLFLALLTLAGLAGIVWFLFKEGMPVLDTISLKHFLTGHDWYPTEDP PSFGIFPLIIGSVSVTLLAAVLAIPLGILCAIFLSEIASSRLRSIFKPFIELLAAMPSVV IGFVGMTVLAPFLQDYFGAPTGLNILNAAILLALMAVPTICTISEDALRSVPRSLKESSL ALGATHWETLTTVTIPAAFSGIATGVMLGLSRVIGETMVVLMVAGGAALIPESLFDPVRP MPASIVAEMAESPFGSSHYHALFAIGIVLFFFTFLCNLAAFLVSQKYKLKASS >gi|301349795|gb|ADCQ01000055.1| GENE 69 76103 - 76306 75 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVRFTRRLRDFNHLCGSGYSMPVTAKRMEMVGKLTSIFKLSVGIDKKLLFCGRNETGFFD ETSAFFR >gi|301349795|gb|ADCQ01000055.1| GENE 70 76244 - 77065 829 273 aa, chain - ## HITS:1 COG:MA0887 KEGG:ns NR:ns ## COG: MA0887 COG0226 # Protein_GI_number: 20089771 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Methanosarcina acetivorans str.C2A # 25 272 66 317 317 174 41.0 1e-43 MRKNYLISLLALSAMTVSASSMAKENVTVSGSTTVLPVMQKISEHLMQKDPSVVIELSGG GSGSGIKALNEKLTQIAMSSRKIKGKEVKAAEEKGVKPFEIPVAVDAIVPIVNPKNTLNG LSLDDLRKIYKGEIKNWKEVGGPDAPIVLVSRDSSSGTFESWESLVMKNQRVSPRALLQN SNGTVVQTVSKNPNAIGYVGLGYVAPIIKAVEINGIKATPLTAKEGKWPLSRDLYLYTNR QPQGAVKKVTDFCLSEEGRGLIKEAGFVPPAKQ >gi|301349795|gb|ADCQ01000055.1| GENE 71 77349 - 78077 219 242 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 230 17 236 318 89 29 8e-17 MNFFYGSKQVLKNISLSFNKKEITALIGPSGCGKSTFLRTLNRMNDLIEGARLEGSIKFG DEEINHQHCDVVELRRRIGMVFQRPTPFAKSIFENVVYGLKVSGVRNKSLLMDKAEESLR RAALWDEVKDRLKDSALSLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATEKLEQG MEELKKDLCIIIVTHNMQQAMRISDNTAFFYMGELIEHGPTKQIFSNATKVKTRQYVSGS FG >gi|301349795|gb|ADCQ01000055.1| GENE 72 78133 - 78471 444 112 aa, chain - ## HITS:1 COG:RSc1188 KEGG:ns NR:ns ## COG: RSc1188 COG0526 # Protein_GI_number: 17545907 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Ralstonia solanacearum # 4 88 3 87 108 74 41.0 4e-14 MADEIVLHVTEANYEDTVVKCDKPVLLAIGAPWCIDCKRIEPMFMEYAQKYHDKIQFAHC DFDTEAGLNTKFRVRHIPTLLLIRKDEILDTLVEPKKVEAFDEFVQKALKEI >gi|301349795|gb|ADCQ01000055.1| GENE 73 78489 - 79721 1062 410 aa, chain - ## HITS:1 COG:FN0793 KEGG:ns NR:ns ## COG: FN0793 COG0786 # Protein_GI_number: 19704128 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Fusobacterium nucleatum # 20 408 12 392 399 144 28.0 4e-34 MDFSQVDGILHIHLDNFFILGIACLCYFLGRWIKSEIKLLQDLSIPVPFIGGLPAAIIFA CLKISKTAVIVLNPDLNALIFQFFLTMMALMGSWKLIKTGFVISIMFWSLAMVLGVLQAL IGLTAAQALGLHQHLGLLMGTLSMMGGTETLTNFIPAVEHLDKFSGAAQAAMGVATLGMV CSMMVSAPMGEYLIKKYSLKNPSRSEFDNARLIRSIERSNKPFYQTHTVECIKIIAICFV CMAFSHLIKQKFLADVLIPDYTVCMVCALIARNFADTTGWFSVDGLALRTLTKIFLILFI LVSTCALQLDLIFDLSAPIIAVFFLELIVNFLFARFIYFNLLGKDFRGMFIAVGGLAFSM GMAANGLSNMQSLCEKYGPNTDGFLVVCVVGLILLAISNTLLIKFLLTIF >gi|301349795|gb|ADCQ01000055.1| GENE 74 79833 - 80753 1014 306 aa, chain + ## HITS:1 COG:FN0277 KEGG:ns NR:ns ## COG: FN0277 COG4866 # Protein_GI_number: 19703622 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 28 293 24 283 290 75 23.0 1e-13 MPIELKPVTLNELPLLQEQLPKLQNGDCNLSIASVIGRAKEYNIKWGISQGELVLNWAPY PDIPPAYVIPLRSENALAIIEDIASECQCCKEPVILFGRFTYMTERISELMRYRNFITVS SNSWWDYVYERDKIENLEGRELHGKRNFNKRFYKAYPNAQFVSFTPELIEKATVFLKNWY ANYGEMTKSLEAERDAIELAFDHFEEFRLIGGALMDGDNMYGFTYGSDVGENIFSVHIEK ADRTVTGAYPALASALCKTLPERFTQINREEDLGIPGLRKAKEDWAPSTMIRKTLLKLQR AIPEPI >gi|301349795|gb|ADCQ01000055.1| GENE 75 80776 - 81306 333 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859365|gb|EFL82447.1| ## NR: gi|302859365|gb|EFL82447.1| hypothetical protein HMPREF0189_01689 [Burkholderiales bacterium 1_1_47] # 1 176 1 176 176 342 100.0 4e-93 MIQDYFSLDKKGDDYLLLRIINKVDFEEEVVWARDFSLSDRSDISKPVEHLMSYLKGGFD SLSEWNGDMEGFHSSIQHFGFENLLRTDNLIPAFILRKDAKTPEINQLIFNELEKERESL GGKELETKVGLLHEALSSIGAKSYQPNDPEATVPVPLSLIFNKDWNAVGALLENYS >gi|301349795|gb|ADCQ01000055.1| GENE 76 81879 - 81974 59 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLAIRLLMARVDKKARKAFGDTEEKQVSKLK >gi|301349795|gb|ADCQ01000055.1| GENE 77 82033 - 83484 1249 483 aa, chain - ## HITS:1 COG:STM1760 KEGG:ns NR:ns ## COG: STM1760 COG0790 # Protein_GI_number: 16765101 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Salmonella typhimurium LT2 # 67 325 187 452 509 82 27.0 1e-15 MVYRLVCSLVYGICIASSGYAAAQSSEIVKEEPAVQTEEKTEAANPAPTQKASAEKEVKP AETVLEPRESEEQLLARQKKIKELIEQAEVQLYGEGVPVDLSKAAVLYGQAADLGSPKAM MRLSALYRKGTGVELSQEKAFELIQKAASLDYAPAQAALGISYLEGRGVEKDENLGYDWI RKAAENGHALSRVMTGERLLSQADNEQSKQTGQEYIDSILQNASPQELYTISYSFGHGLR LTKNPEKARYWAKAAADKGSVNGTYYLGELYWNAKEVPEALKCFEKAAEMGLTAAELQTG RIYLYGAEGVAKNPAKAVYWMKKAAPIASNEDLLTLVGLELSGPRAVKNHEDAQKYLDMY IARAKPEELEENAEKYWNGVGVRKNFDIGGALALAAVQKGNKANVCSYAMKLATPNWFGG DPVIAYAILNDCVLQKGASEEEVKAFEALEKRMSAEDLRKAQNLNGEDAIEAIKIRRVYL TSK >gi|301349795|gb|ADCQ01000055.1| GENE 78 84101 - 84829 610 242 aa, chain + ## HITS:1 COG:BS_ybgA KEGG:ns NR:ns ## COG: BS_ybgA COG2188 # Protein_GI_number: 16077306 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 17 236 16 229 235 67 29.0 2e-11 MKNARWVRLADDLTRGITNGDYPLDSYLPTEMELCEKYNVSRYTVRLALADLTRMGLIKR WPRLGSKVVSVGFDETYAHTYTSFADIDGLSSTHKRVVQGTQECVVDHALAKRLECERYL RFLRFSNVRTNPTDNGKPVVWTAVYVNAAYSRLPDLARLNPLVLLSTLIEKEYGEKCLEV VQKISAVPLPAEAAMYLDAQVGSPCLRILRHYMGIKRNILEISESYHPGDRYALTMNMRA NR >gi|301349795|gb|ADCQ01000055.1| GENE 79 84939 - 86996 1860 685 aa, chain + ## HITS:1 COG:RSc2711 KEGG:ns NR:ns ## COG: RSc2711 COG1200 # Protein_GI_number: 17547430 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Ralstonia solanacearum # 33 683 1 669 671 625 51.0 1e-178 MAEISWKRKPGQKLAPLAERLKKLGLVSDWDFVLHLPLRYEDETSITPIEELEVGVDAQV EGVVTNNSDNRFGNFEAWVDDETDMLKVRFIHYYPSIRDLLKVGKRVRLYGNPRAAFGGG LEMIHPKVRAPKSESDLPKTLSPVYPAGEGVTQLWLRKRIDRALMDVDISDLLTEEERNE LHLPGLSEAINSLHHPKAGAPIGPLQNRTDPAWQRLKFDELLAQQISLKKSREMRDMNKG PLMPLRKGDNNSLTAKFFHSLPFKLTKAQIRVWKDIYESLGSERPMNRLVQGDVGSGKTV VAALAACQAIDAGYQAALMAPTEILAEQHFKKIISWLEPFGVRVVWLSGKQKAKEKREAL AAIEDGAELVVGTHAIIQPDVKFKALGLAIVDEQHRFGVDQRLAIRAQQNGMMPHLLMLS ATPIPRTLAMSYLADIDVSVIDELPPGRQEISTKLVSMSRKGDLVEWIGKSLAAGLQAYW VCPLIEESEKVDLTAATETCEEIKQILPQFKIELLHGKMTPEDKNAVMDRFVKGETKLLV STTVIEVGVDVPNASIMVIEHAERFGLAQLHQLRGRVGRGSIKSYCFAIFGDQLSKIGKE RLQVFNDTTDGFEISRRDLELRGPGEFLGARQSGAALLRFADFETDGFLVEKAMAMADKW IREKDPRAEKHAARWYQSKEKYLEA >gi|301349795|gb|ADCQ01000055.1| GENE 80 87031 - 87864 880 277 aa, chain - ## HITS:1 COG:RSc2684 KEGG:ns NR:ns ## COG: RSc2684 COG0345 # Protein_GI_number: 17547403 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Ralstonia solanacearum # 7 268 8 271 274 183 41.0 3e-46 MNRKTIAFIGGGNMGEAIISKMVSSDWKGDDIHVIDHNEEKLERLSSEYGVHAHKEPGSW LSEIDAVVLAVKPQQLAEAIKASKEWIEDALVISIAAGVRVKDLEAMIGHNCICRTMPNT PMKIGLGVCGLYSTPEAEPDHRFIVKVFAACGDLIWCTKEEELDGVTAISGSGPAYVFRF IEALTEAGLRYGFNDVQAKRMAIATVLGSAELAKRSGESPSVLREKVTSKGGTTYEALKV MNDRHFMEMMQDAMDACKKRAVELGDAFHESVEAAEK >gi|301349795|gb|ADCQ01000055.1| GENE 81 87867 - 88592 523 241 aa, chain - ## HITS:1 COG:HI0090 KEGG:ns NR:ns ## COG: HI0090 COG0325 # Protein_GI_number: 16272064 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Haemophilus influenzae # 28 241 23 235 237 241 58.0 6e-64 MSILKPGLEERYKRVKQSLADDEMRFGREPGSVFLLPVSKTFGINALEEAVKCGMRAFGE NYVQEGCEKIEYFKKQHPDLEITWHFIGHLQSNKTRPVAEHFDWVQTVDRLKIAQRLSEQ RPADMPPLNVLIEVHISDEESKSGCQPADVPALAQAITLLPNLKLRGIMAIPAPSDTEEG KKAPLKEMYAIFLHLRDELNFDIDTLSMGMSSDMAEAVECGSTMVRVGSAIFGPRDYTKK E >gi|301349795|gb|ADCQ01000055.1| GENE 82 88858 - 89352 631 164 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859372|gb|EFL82454.1| ## NR: gi|302859372|gb|EFL82454.1| putative transposase IS1296EH (ORFA) [Burkholderiales bacterium 1_1_47] # 1 164 1 164 164 266 100.0 3e-70 MPKTIKTARGLARFAKAPYASRRKSLPRHSFETRQKALAIFQAGGSYKNCAKTLNIPVYT ARDWHRSFLIGTFRAEHGARQQSYTPEQKAEVLRLRKEEGKSYNVISQLTKVNRATVLQW IHKDIAQQQAAEAAAQQAPANDSEMTETGPVGAVAEMTTSGPTA >gi|301349795|gb|ADCQ01000055.1| GENE 83 89480 - 90082 448 200 aa, chain + ## HITS:1 COG:XF2273 KEGG:ns NR:ns ## COG: XF2273 COG1636 # Protein_GI_number: 15838864 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 8 200 14 206 236 176 44.0 2e-44 MSSLVLGPLPKEVLLHSCCAPCSAAILEWLQQNGVRPTIFFYNPNIYPVKEYLIRKNELD RFAQSLGIRVIDGDYRHDLWRLAVIGLEKEPERGRRCLACFKHRLLVTAECAKREGIELY TTTLAGSRWKSAEQIREAAAHAKSLIPESTYWDVNWKKGGLQERRGILLKENGFYNQRYC GCEFSMGHLTEEQRIEILKR >gi|301349795|gb|ADCQ01000055.1| GENE 84 90295 - 90897 410 200 aa, chain + ## HITS:1 COG:YPO0670 KEGG:ns NR:ns ## COG: YPO0670 COG2249 # Protein_GI_number: 16120995 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Yersinia pestis # 3 187 4 188 194 144 40.0 8e-35 MRVFVINAGVKRPDGSGGWLNAEMTRMAKEAFERRKIESIITDLNEKWDLEKEVEKVLGS DLLLVQTPIWAMSTPWQYTKWQDIVLTDPRVCGTDGRTRKDPNKLYGTGGFLTKKRYWIS TTWNAPEDAVCEPGQFFDARGLEGVLMPLHKQFQYMGIKPLAPSFAIFDVYKNPTVESDL LRWKSTLEVVTGKLLIGQTQ >gi|301349795|gb|ADCQ01000055.1| GENE 85 91099 - 92148 1412 349 aa, chain - ## HITS:1 COG:YPO2002 KEGG:ns NR:ns ## COG: YPO2002 COG1073 # Protein_GI_number: 16122244 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Yersinia pestis # 2 347 19 363 363 398 60.0 1e-111 MKKLLCAALVGALMTTYSAVAADFSKNPYGLVYDNAITENVAGKVNIHPVSYTVDGIRVA ANVYTPAGYDPKKSYPAIVVAHPNGGVKEQVAGLFAEKLAGMGYITVAADARYQGASGGE PRHTDKPANRIEDINGMVDYIRTYPGVNANEIGALGICGGGGYTLGAAQKDPRIKAVATI SMFNSGRVRRNGFQDSQMDTIQQRLAQAAEARTFEKEGDVRLVGAMNLTDEQAKKLPFAL YRDGFFYYFRTHAHPNSTFLYTQSSLMDLMNWDVDDHMAMIHQPLLMIAGDVSDTRYMTD DAIKKATGTKDKEIYLVKGAQHIETYWVPKYVNEEAAKLQEFFGKYLKT >gi|301349795|gb|ADCQ01000055.1| GENE 86 92628 - 93077 498 149 aa, chain + ## HITS:1 COG:no KEGG:Acfer_0863 NR:ns ## KEGG: Acfer_0863 # Name: not_defined # Def: hypothetical protein # Organism: A.fermentans # Pathway: not_defined # 1 149 1 149 152 82 37.0 3e-15 MKESDLCVIAVVYGVATWFLVMTLQLPPAAQSYPLILLTALYCCNTLFLGKQLYSFYRHR VVLNDFRKLFAGFLPGQFFGVLAGCIIYMALVNYLGYYISSVLYLLLAQFFLKVKPIPAI ISCACIMIVTYLVFSMFLHVPLPLGIWFE >gi|301349795|gb|ADCQ01000055.1| GENE 87 93090 - 94598 1905 502 aa, chain + ## HITS:1 COG:FN2105 KEGG:ns NR:ns ## COG: FN2105 COG3333 # Protein_GI_number: 19705395 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 11 494 7 490 494 515 63.0 1e-146 MLETLSLMGMGFIHAMNPLTLILMIGATALGITIGCLPGLSAAMGVALLLPVTFGMDQAT GLIVLGGIYCGAIFGGSISAILIHTPGTPASAATAIEGYELTKKGMAAKALAVACFASFC GGLLSCISLYFFSPFLAELAMKFKSPEYFWLSIFGLTVIAGVSSKSLLKGFISGILGLLI STIGMDPMEGVERFMMGSATLYNGVNVTCALIGLFSMSQVLILAEKAIKKRAKAAKFTGS LLLSRADIKRLAPTITRSWIIGNILGILPGAGATIACFMGYNEARRFSKHKEEFGKGSID GVAGSEAANNAVTGGSLIPTLTLGIPGESVTAVLMGGLIIHGLQPGPELFSTYASMTYTF FAGFVLVQFAMLGVGLIGCRMFAQVSRLSDSILIPSIFLLCVVGSFAIHNNFVEVIIMFI FGIIGYFVRKFDLNAAAIVLGLILGPIGENGLRRSLYLSDGDPTILFSTPLCWMLILLCV LGTCSPWLMARWEKHVEARSHH >gi|301349795|gb|ADCQ01000055.1| GENE 88 94798 - 95154 630 118 aa, chain + ## HITS:1 COG:FN2103 KEGG:ns NR:ns ## COG: FN2103 COG3181 # Protein_GI_number: 19705393 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 23 117 17 111 308 109 54.0 2e-24 MKKVLAAVAVAMTLPMTVMAWEPTGDVNVIVAYKAGSGTDTGARLLATEAQKYIPKTIII QNLPGADGKIGWTKLVQSKPDGQTIGFINLPTFTTLAAQSGAPFSINDIVPLIFCVFQ >gi|301349795|gb|ADCQ01000055.1| GENE 89 95185 - 95436 339 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 83 513 595 595 158 92.0 1e-37 MRENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAG PETPEEVPEEPEIEPLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 06:52:07 2011 Seq name: gi|301349794|gb|ADCQ01000056.1| Burkholderiales bacterium 1_1_47 cont1.56, whole genome shotgun sequence Length of sequence - 48483 bp Number of predicted genes - 47, with homology - 45 Number of transcription units - 20, operones - 10 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 89 - 159 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. - Term 200 - 238 1.1 1 1 Tu 1 . - CDS 352 - 519 66 ## gi|302859057|gb|EFL82140.1| hypothetical protein HMPREF0189_01860 - Prom 555 - 614 3.3 2 2 Op 1 . + CDS 655 - 1701 579 ## gi|302859058|gb|EFL82141.1| putative porin transmembrane protein 3 2 Op 2 . + CDS 1664 - 1789 111 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein 4 3 Tu 1 . + CDS 2449 - 2742 63 ## gi|302859059|gb|EFL82142.1| putative transposase 5 4 Tu 1 . + CDS 3087 - 3416 113 ## gi|302859060|gb|EFL82143.1| hypothetical protein HMPREF0189_01863 - TRNA 3551 - 3627 85.7 # Arg ACG 0 0 + Prom 3723 - 3782 3.5 6 5 Tu 1 . + CDS 3805 - 5331 1509 ## COG0433 Predicted ATPase + Term 5349 - 5398 8.1 - TRNA 5443 - 5518 89.0 # Gly GCC 0 0 - TRNA 5555 - 5630 89.0 # Gly GCC 0 0 - TRNA 5636 - 5709 61.5 # Cys GCA 0 0 - TRNA 5730 - 5805 89.0 # Gly GCC 0 0 + Prom 5951 - 6010 4.6 7 6 Tu 1 . + CDS 6037 - 6459 319 ## COG5319 Uncharacterized protein conserved in bacteria + Term 6621 - 6667 -0.2 - Term 6328 - 6360 -0.8 8 7 Op 1 . - CDS 6434 - 8356 1768 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 9 7 Op 2 . - CDS 8349 - 9245 722 ## PROTEIN SUPPORTED gi|76809485|ref|YP_333989.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 10 7 Op 3 . - CDS 9235 - 10380 540 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Term 10443 - 10476 5.4 11 8 Op 1 1/0.400 - CDS 10483 - 11289 893 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 12 8 Op 2 . - CDS 11292 - 12482 966 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 12510 - 12569 2.8 - Term 12567 - 12604 3.1 13 9 Tu 1 . - CDS 12620 - 13039 529 ## COG0780 Enzyme related to GTP cyclohydrolase I - Prom 13074 - 13133 8.0 + Prom 12999 - 13058 6.2 14 10 Op 1 . + CDS 13259 - 14422 1074 ## gi|302859069|gb|EFL82152.1| conserved hypothetical protein + Prom 14425 - 14484 4.0 15 10 Op 2 . + CDS 14514 - 16568 1796 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 16 10 Op 3 . + CDS 16561 - 17313 815 ## COG0005 Purine nucleoside phosphorylase + Term 17337 - 17365 1.3 - Term 17319 - 17359 10.5 17 11 Op 1 9/0.200 - CDS 17379 - 19931 1731 ## COG2844 UTP:GlnB (protein PII) uridylyltransferase 18 11 Op 2 . - CDS 19958 - 20773 913 ## COG0024 Methionine aminopeptidase 19 11 Op 3 . - CDS 20766 - 20885 98 ## - Prom 20982 - 21041 4.5 + Prom 20946 - 21005 4.6 20 12 Op 1 38/0.000 + CDS 21117 - 21875 900 ## PROTEIN SUPPORTED gi|187478228|ref|YP_786252.1| 30S ribosomal protein S2 + Term 21904 - 21939 6.5 + Prom 21879 - 21938 3.0 21 12 Op 2 24/0.000 + CDS 21961 - 22848 589 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 22 12 Op 3 . + CDS 22875 - 23600 1035 ## COG0528 Uridylate kinase + Term 23625 - 23668 12.0 - Term 23610 - 23657 7.0 23 13 Tu 1 . - CDS 23674 - 23820 294 ## - Prom 23841 - 23900 2.4 + Prom 23876 - 23935 5.2 24 14 Op 1 19/0.000 + CDS 24067 - 24627 808 ## COG0233 Ribosome recycling factor 25 14 Op 2 32/0.000 + CDS 24643 - 25389 418 ## COG0020 Undecaprenyl pyrophosphate synthase 26 14 Op 3 15/0.000 + CDS 25393 - 26247 881 ## COG0575 CDP-diglyceride synthetase 27 14 Op 4 17/0.000 + CDS 26257 - 27435 974 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 28 14 Op 5 18/0.000 + CDS 27438 - 28799 943 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 29 14 Op 6 17/0.000 + CDS 28837 - 31170 2577 ## COG4775 Outer membrane protein/protective antigen OMA87 30 14 Op 7 15/0.000 + CDS 31214 - 31711 584 ## COG2825 Outer membrane protein + Term 31722 - 31762 8.7 31 14 Op 8 18/0.000 + CDS 31865 - 32953 1194 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 32 14 Op 9 25/0.000 + CDS 32955 - 33395 522 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 33 14 Op 10 11/0.200 + CDS 33406 - 34200 1050 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 34 14 Op 11 11/0.200 + CDS 34200 - 35351 700 ## COG0763 Lipid A disaccharide synthetase 35 14 Op 12 1/0.400 + CDS 35351 - 35992 419 ## COG0164 Ribonuclease HII 36 14 Op 13 . + CDS 35993 - 36799 175 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 36803 - 36835 5.0 - Term 36790 - 36822 5.0 37 15 Tu 1 . - CDS 36850 - 37716 804 ## COG1806 Uncharacterized protein conserved in bacteria - Prom 37764 - 37823 3.0 + Prom 37721 - 37780 5.1 38 16 Tu 1 . + CDS 37808 - 40189 3073 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Term 40215 - 40253 2.0 + Prom 40212 - 40271 2.0 39 17 Op 1 . + CDS 40308 - 40730 249 ## gi|302859092|gb|EFL82175.1| putative membrane protein 40 17 Op 2 . + CDS 40691 - 41212 489 ## gi|302859093|gb|EFL82176.1| conserved hypothetical protein 41 17 Op 3 . + CDS 41205 - 41738 524 ## gi|302859094|gb|EFL82177.1| conserved hypothetical protein 42 17 Op 4 . + CDS 41760 - 42929 1481 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family + Term 42944 - 42978 4.0 - Term 42835 - 42882 4.2 43 18 Op 1 . - CDS 42926 - 43498 388 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 43502 - 43533 4.1 44 18 Op 2 . - CDS 43543 - 44001 471 ## COG0691 tmRNA-binding protein - Prom 44079 - 44138 2.1 + Prom 43970 - 44029 6.1 45 19 Tu 1 . + CDS 44118 - 44405 163 ## gi|302859098|gb|EFL82181.1| protein RnfH + Prom 44419 - 44478 6.8 46 20 Op 1 13/0.000 + CDS 44498 - 45964 2192 ## COG0516 IMP dehydrogenase/GMP reductase + Term 46003 - 46057 12.1 + Prom 45978 - 46037 3.0 47 20 Op 2 . + CDS 46068 - 47633 1768 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 47667 - 47702 4.2 Predicted protein(s) >gi|301349794|gb|ADCQ01000056.1| GENE 1 352 - 519 66 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859057|gb|EFL82140.1| ## NR: gi|302859057|gb|EFL82140.1| hypothetical protein HMPREF0189_01860 [Burkholderiales bacterium 1_1_47] # 1 55 36 90 90 103 100.0 5e-21 MLKRREVEQVNYAGKVSLDKIFAKWYRNKWLLKKDETLLSETSNLYPIYLWALAH >gi|301349794|gb|ADCQ01000056.1| GENE 2 655 - 1701 579 348 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859058|gb|EFL82141.1| ## NR: gi|302859058|gb|EFL82141.1| putative porin transmembrane protein [Burkholderiales bacterium 1_1_47] # 1 348 1 348 348 647 100.0 0 MGGLSSADGTYTILDGATIGKSYNEAGLTSIYVTTPFTNNAVVYVSPEFGGVKFHAMYSN GLYDDTNKWSKNTHTYGAGLTYGSERAKGSVMYEVIDSAVDFSPMNANSGDVKSKDTQIF TVGSQYRFDSFTLYGTYQYVTHARLLPDFDITLTDAAINSGMIKKGFNSHAFSVSGAFPV FGGTFKAVINYMNGKAKDGEVKSFLGASKFERLAGGITYEYPLSKRSTLYGFGAVSVGMK GAKYNFRLRQSCLQHMERRFLLASLLLTKRLGISNFSFSLVISIALMHNSGGTKVSFNWV RLFRFYMRSCNSFNLWARSGILNFLCYTSSLLRRSLNDKSETTSASGQ >gi|301349794|gb|ADCQ01000056.1| GENE 3 1664 - 1789 111 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 41 1 41 595 76 82.0 6e-13 MTNPRLPPLLVNKASSVFYVYTYKNVWDRDLKRSKRGESKK >gi|301349794|gb|ADCQ01000056.1| GENE 4 2449 - 2742 63 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859059|gb|EFL82142.1| ## NR: gi|302859059|gb|EFL82142.1| putative transposase [Burkholderiales bacterium 1_1_47] # 1 97 49 145 145 195 98.0 8e-49 MSDRGYSDAKNIKDCLRNKLGFLFNVQCEMPGSFAQELIDEERENLRDLNRMDWLTKVFQ ITKEINWTFEPDLVQGQVSSKKTKESRYFTGTSISID >gi|301349794|gb|ADCQ01000056.1| GENE 5 3087 - 3416 113 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859060|gb|EFL82143.1| ## NR: gi|302859060|gb|EFL82143.1| hypothetical protein HMPREF0189_01863 [Burkholderiales bacterium 1_1_47] # 1 109 61 169 169 217 99.0 2e-55 MLFLVASIEMIVRARLRKYFEGGKTSDSLPTDYDRSCRVLDSLNNVIQTKFCDGYYFGGS AGKNADFLKLLVSRFPALNQKRNGITKTKRKQNPREEAVCSEIGLRQMH >gi|301349794|gb|ADCQ01000056.1| GENE 6 3805 - 5331 1509 508 aa, chain + ## HITS:1 COG:RSc2189 KEGG:ns NR:ns ## COG: RSc2189 COG0433 # Protein_GI_number: 17546908 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Ralstonia solanacearum # 20 508 16 533 535 574 59.0 1e-163 MDNQIIFGVTDEQSGYKDEILLTNMSNRHGCITGATGTGKTVSLQKLAESFSKKGVPVFL ADIKGDLSGIAKAAVPTDKLKARLEKHHLPTLDWSACPVVFWDVFGQEGFPVRATISDMG PLLLSRLLQLNDTQEGVLNAVFSIADDNGLLLLDLKDLRSMLQFVGDNAAQFRTKYGNIS MASIGAIQRGLLVLENQGGDKFFGEPMLNIHDLMQTSDGKGVVNILAADKLMQSPMLYAT FLLWILSELYENLLEAGDLEKPKLVFFFDEAHMLFNDAPQVLIDKVEQVVRLIRSKGVGV FFVTQSPADIPEKVLSQLGNRVQHALRAFTPRDQKAVRTVAETMRPNPKIDMVQAIQELG VGEALVSFLDDNGTPGITQRVWVCAPGSQIGPIAPAERQAIQNASVLKGVYDKAIDRVSA YEVLQQRGSSAVAADNGAPQPGKLAAPGAAEQEGPDFTDILMSKAKDILLGSTGPRGGHR EGIVEKVVRQSGEKILRGILGSLLGGKK >gi|301349794|gb|ADCQ01000056.1| GENE 7 6037 - 6459 319 140 aa, chain + ## HITS:1 COG:AGl2637 KEGG:ns NR:ns ## COG: AGl2637 COG5319 # Protein_GI_number: 15891429 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 128 4 131 142 86 36.0 1e-17 MGLKVFNFICENGHTFEAMVPSIEAFEEQKKNGFFTCPVCNSNVISRALSAPHIQASSTQ KDVSQNTVEAMHTVYKTVKKILDESEFVGDRFADEARSIHRGDAPDRLITGTPTSEEVSE LRDEGIEVLEIGLKKDRSTN >gi|301349794|gb|ADCQ01000056.1| GENE 8 6434 - 8356 1768 640 aa, chain - ## HITS:1 COG:RSc1376 KEGG:ns NR:ns ## COG: RSc1376 COG0488 # Protein_GI_number: 17546095 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Ralstonia solanacearum # 1 633 34 675 676 558 48.0 1e-158 MLRLQNVSLVRGVRVLYKNVNLTTSDGEIIGLVGPNGSGKSTLFAAILGELSTEDGDILA PPLNRISHVAQRVVETDLPALEYILEGHAPLMEAKAELKRAEEAGDDMAYAQAVAHLAEI NEGAVVAKAEEILYGLGFKPNDSSRQVSEFSGGWRNRIALARALMRPADLLLLDEPTNHL DIDSVIWLESFLKQQEATVIVISHDREFLDRIAKSIWSVEDNTINRYGGNYSQFEVTRAQ KLALQQAAAKAYERAASHLQAYIDRFRYKATKARQAQSRIKMLEKLQSVEPVLAKNEWRF SFLQPEKVPQHLITAEGVACGYEPDHPILTQVKCNISAGARIGILGVNGAGKSTLVKTLI GELEPLAGEIRYGQGLEIGYFAQHQLNDLRDDESPLQHLTRIAPPNMRELDLRNFLGKFR FSGDQALAPVGPMSGGEKARLSLALIAWNKPNLLVLDEPTNHLDMKTREALTVALSSYEG AVLLVSHDRHLLRASCDELWLVRDGKLSEFDGDLDEYAEIVLKDKKARNAAPEDSGAPVP VNRKEQRRNEAQERARISALSKPLKKELSKIEKELDLANKEKSALDLKLADTDFYQGNQD EVAEALKRHGELSSKIDELEGRWLEISEELQNISSSSDLS >gi|301349794|gb|ADCQ01000056.1| GENE 9 8349 - 9245 722 298 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|76809485|ref|YP_333989.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Burkholderia pseudomallei 1710b] # 1 296 1 303 307 282 46 2e-75 METNTEPLKTIRDFIRYCTTRLYSSEATFNHGYQNPEEEAAFLVLRTLRIPLEYEEKFLD ATLTGNERETVLNNISRRCDDLEPTAYITKEWWLTGFPFYVDERVLIPRSYIAELIEKNF DGLLPDPARIHSILDMCTGSGCLAILLAEKFPQAEVDAVDISSDALEVAEINIADYEFEN RVYPIQSDLFENLQNTKYDLIISNPPYVTEASMEGLPQEYRYEPSLALVAGADGMDIIDR LLKEVKAHLNDNGVLIVELGDGAENFKERFPNIEVTWLPTSGGKDQVFMIKKEQLPDA >gi|301349794|gb|ADCQ01000056.1| GENE 10 9235 - 10380 540 381 aa, chain - ## HITS:1 COG:NMB1530 KEGG:ns NR:ns ## COG: NMB1530 COG0624 # Protein_GI_number: 15677382 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Neisseria meningitidis MC58 # 2 374 3 376 381 376 49.0 1e-104 MQQDPLELTKKIIACESVTPSDAGSLKIFADLLSQHGFSCEEINRGQTKNLWAKYGSGAP VFLFAGHVDVVPPGADGWKFPPFVPTEDEGFLYGRGAQDMKTSDACFAAAACEFVSKHPQ FKGTIVLLLTSDEEGDGKDGTQYALQVLSDREVAPDFCIVGEPSCTRLLGDTIKNGRRGS LNGKLTVRGIQGHVAYPKKVRNPIHSAAPLLAELSQTVWDEGLPPFPATSFQISNIHAGT GAVNVVPGECVITFNIRYNPKHTAASLEKQIEDMCRKYVWDFKIEWQESASPFFSEKPFF RNELAEAIKDVTGIKPEFSTSGGTSDGRFIRQWCPEVVEFGPVNDRIHKVNERIPTKDIA CLSKIYYRILERIFLSEHDGN >gi|301349794|gb|ADCQ01000056.1| GENE 11 10483 - 11289 893 268 aa, chain - ## HITS:1 COG:NMB0335 KEGG:ns NR:ns ## COG: NMB0335 COG2171 # Protein_GI_number: 15676250 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Neisseria meningitidis MC58 # 3 267 2 271 273 362 68.0 1e-100 MEALKQIIEQSFGLRPEHFPPEVQNSVDEVIKLLQQGKLRVAEKIDGEWVTHEWIKKAVL LSFQLYPNKMVRAGDLSFFDKVPSRFDHFSEADWKESGIRCVPTAVARHGSYIAPSVVLM PSFVNIGAYIGENTMVDTWSTVGSCAQVGKNCHLSGGVGIGGVLEPLQATPTIIEDNCFI GARSEIVEGVIVEENSVISMGVFIGQSTKIYDRTTGEIHRGRVPAGSVVVPGSLPSADGK YNLNCAVIVKRVDAKTRSKTSINELLRD >gi|301349794|gb|ADCQ01000056.1| GENE 12 11292 - 12482 966 396 aa, chain - ## HITS:1 COG:RSc1394 KEGG:ns NR:ns ## COG: RSc1394 COG0436 # Protein_GI_number: 17546113 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Ralstonia solanacearum # 1 391 19 413 417 452 58.0 1e-127 MNPLLNTLQPYPFAKLRKLLEGAKLPEDLKPISLSIGEPKHPAPDTVKQALFDHQALFEK YPPTGGYPELKEAIGNWIEKRYGVKLDPASQILPTNGSREALFALTQVLIDPTQDPVVVM PNPFYQIYEGAAKLAGAQPYFCPMTAETGFKPNYSSIPEDVLKRTQLLFVCSPNNPTGTV LSLEDWRKLFDLSDKYGFVIGSDECYSEIYFDEDNPPLGALSAAKLLGRPNFDRLIVFSS LSKRSNIPGMRTGFVAGDEKLIKPFLLYRTYHGSAMGGAVQHASIAAWNDEEHVRENRRF YVEKFKAAVPLLKQALEVEMPDASFYLWAKTPIDDKLYARRLYEKKGITVLPGSFLGREV NGVNPGSGYIRIALVATVPEVTEAAQRIAEFDPFEE >gi|301349794|gb|ADCQ01000056.1| GENE 13 12620 - 13039 529 139 aa, chain - ## HITS:1 COG:slr0711 KEGG:ns NR:ns ## COG: slr0711 COG0780 # Protein_GI_number: 16331958 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Synechocystis # 9 118 25 134 137 125 55.0 2e-29 MSTAPCKNLETFPNPQPNRDYLIHIEIPEFTSLCPLTGQPDFATLLLDYIPDQKNVELKA LKLYMWSYRQEGAFHEAITNKILDDLVAATSPRFIRLKAKWWVRGGIYTTVVAEYRKEGW TPVKPVELPEFESNDPTRG >gi|301349794|gb|ADCQ01000056.1| GENE 14 13259 - 14422 1074 387 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859069|gb|EFL82152.1| ## NR: gi|302859069|gb|EFL82152.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 387 1 387 387 717 100.0 0 MNMVGMGVTIVLILAVGGVGVWYWLRIKETSSHEKVEDKTPPRIPQEPIFGEDLINSGDI KVDEIKKTSPPAEEPQSESQSPEETIEEVQEVLLKETEEEEEPVETSPVLEEIDDSGLPK YDPFVTELVRITFKKPVTGSQLAPFVKTAMENAPRGLLRILALEANSNRWFVPDAIGMFS AIAFYIQLASGKASFDQVSLSNLYQLVFLRMEMNLDGTSEMKEMQLLNNHTDQLNALIKN FGVQITLLLRPLEPVSIDDFEKETMLLGLKRRSMTHYEKLGELVLDKNGKRQGNRKGTIE LRWLDDRNIAISLNVPLIAPESDPLRLLMTAANAFAAVFDGKIVDPKGCEISGATVSLLK QELDRFYKQMRENNIEPGSVRAHQLLD >gi|301349794|gb|ADCQ01000056.1| GENE 15 14514 - 16568 1796 684 aa, chain + ## HITS:1 COG:lig KEGG:ns NR:ns ## COG: lig COG0272 # Protein_GI_number: 16130337 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 9 676 1 669 671 624 48.0 1e-178 MEEQDKKKLEAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQF KSPVSPTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQTI DYDCELKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPLKVDGFPKIFEV RGEVIMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYGYGEV SEMPADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDIDGVVYKV NSFARQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKPVFVGGT TISNVSLHNEEFLQNMGIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVMPEFCPVC GSHAYKEDGEKDRHCSGGLFCRAQRAQSILHFVSRKAMGIDGIGEKLAEQLIEHDLVTTV ADIYRLTVDKLVGLDRMGQKSAEKLVASIEASKKTTLERFLYAISIPEVGEATARNLASH FGALKPLEEASLEQLQEVEDIGPSGAENILHFFAEPANIAVINDLMDRGVVWEEGTGTSG QELPLNGLTFVLTGTLPTLSRDEASDIIRKAGGKVSGSVSKKTSYVLAGESAGSKLAKAE ALGVNIIDEPELFKMINQGVKADG >gi|301349794|gb|ADCQ01000056.1| GENE 16 16561 - 17313 815 250 aa, chain + ## HITS:1 COG:PA3004 KEGG:ns NR:ns ## COG: PA3004 COG0005 # Protein_GI_number: 15598200 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Pseudomonas aeruginosa # 1 216 1 216 245 203 47.0 2e-52 MANFALIGGSGLDQLSLLEGKVIEKIDTPYGKEPVEICRGVIDGLNIVFLSRHGTTEKKP PHMINYRANIWALSQFEPKAVIALASVGAVLPEDDIGAIAVPDQIIDYTWGRETSYNTGK EKFINFIDFTYPFDMDLREAIVDASEELDLPIIDGGTYACTQGPRLETAAEVDRIDNDGG HYVGMTLMPESCLARELNLKYAAICQIVNTAAGRGASEKGIVLDDTKEALTKATKESVNL ALATFRSLAD >gi|301349794|gb|ADCQ01000056.1| GENE 17 17379 - 19931 1731 850 aa, chain - ## HITS:1 COG:RSc1402 KEGG:ns NR:ns ## COG: RSc1402 COG2844 # Protein_GI_number: 17546121 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: UTP:GlnB (protein PII) uridylyltransferase # Organism: Ralstonia solanacearum # 10 850 17 861 861 668 41.0 0 MEINEIVKKFKDQREVLAKKFLADVDADAYLSAHAKAADKAVLAILKLNQLSEDVAVVAV GGYGREQQFPYSDLDLLFLLPDGVRDKDLKTISDAIGNLWSLGLTVGYSVRSIEECLEQA EVDITAQTAMLESRLIAGNEELFKTYSETMEKNLNLKKFYLAKFIEQQQRHLKYHESSYA LEPNIKEAPGGLRDLNILIWVLRAARLGNTWQEVFEKGLITRRECELLESVTKSLYRLRI HMHLLTNRHEDRLIFEIQEPLAKALGIVGTVGRRPSEVMMQHFYVNAKTIGQLNSIILQA IKERYSKEPEQTGEPICSGFVRQGDVLGLESPDVLVKNPERILEAFLIQERHPDIPMKSS RLYRALFEAHSLMNKEWAENPVNRQTFLKIIQGRRGVWHALEEMNRWGVLGKLLPSFNRI VGQMQHDLFHAYTVDQHTLLAIRYLRNFTHSENAHELPLCTELMMAMKGSWRLVLALLYH DIGKGRGGDHSKIGAEIVRQMCRDFEIADEDADYIEFLVREHLTMSMVAQKQDISDPEVI ENFAKKVGTMERLVSLYLLTVCDIRATGPKIWNAWKAQLLEDLFYSTARFLKGKGIDRDL LVSRRRKDALRLTRFTPEQRDRINKFWDNFDVAYFMKHSVRNIVWHAKVLLPHLDSPKSF VASRPLRGMEHAHEILILTQDRPELFARIVSNLQQYGLSIAEARIHTGRDGRVVDSFIVV DDGSDPNFEQEFARFQEILAEKLDLAEKLPPPLRGRPSRQSKLFPISPQASLRPDAAGRQ YMLSIVTTDRLGLLASIARVFVQYGINLVTARITTLGERAEDVFLIESFKLRDPVFCAEF EKAVLEALEL >gi|301349794|gb|ADCQ01000056.1| GENE 18 19958 - 20773 913 271 aa, chain - ## HITS:1 COG:RSc1403 KEGG:ns NR:ns ## COG: RSc1403 COG0024 # Protein_GI_number: 17546122 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Ralstonia solanacearum # 5 267 3 267 275 324 60.0 1e-88 MFDNILIKTPEQIEGIRAACRDAALVLDYIEPFVKAGVTTEYLDDLMLRYTEDVLKDKSA CLNYDPDGTNPYPKATCISVNHQICHGIPNEKVLKNGDILNIDVTVIKNGYYGDTSRMYS VGHISVAAKHLINVTFDSMWKGIEIVRPGAHFGDIGYAIQHFVEPQGCSVVREFCGHGVG VGFHEDPQVCHYGKLGTGAVMKPGMIFTIEPMINAGRKELRILPNGWTAVTKDRSLSAQW EHTILVTETGYEVLTVSPKCPPAPSWIKPSS >gi|301349794|gb|ADCQ01000056.1| GENE 19 20766 - 20885 98 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIATFLPVDLYKAEITPLIGESTKIAALKNFFESDLINV >gi|301349794|gb|ADCQ01000056.1| GENE 20 21117 - 21875 900 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|187478228|ref|YP_786252.1| 30S ribosomal protein S2 [Bordetella avium 197N] # 6 243 4 243 249 351 70 5e-96 MSSLSMRELLEAGAHFGHQTRFWSPKMSQYIFGSRNKIHIINLEKTVAKFDEAAKFLTNL AAQKGTILFVGTKRTSRDAIVAEAKRAGMPYVDQRWLGGMLTNFKTVKVSLKRLKEMEQK VADGALEKMTKKEALDFTRELEKLNKAMGGIKEMNGLPDALVVVDVGYHKIAIQEANKLG IPVVGIVDTNHNPAGVDYVIPGNDDSARAVALYAKGFADAILEGKNKNLEDTVKAAKDSD FVEEAAVEEKAE >gi|301349794|gb|ADCQ01000056.1| GENE 21 21961 - 22848 589 295 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 287 1 276 283 231 46 6e-60 MAVITAAMVKELRVKTDAPMMECKKALTEADGNMEQAEEILRVKLGNKATKAASRITADG VVAIYIDEPGKIGAIVELNSETDFVAKNADFIAFANDIAKLVAENKPADVAALSALPLNG STVDEVRKGLIGKIGENISIRRFQIIEGKGKLSTYIHGGAKIGVIVDVVGGNDEVAHDVA MHIAASKPKALDKDGVDQNLIETERRVAIEKARENGKPEHLIEKIAEGSVNKFLKEVTLL SQPFVKDDSKSVGELLKSNGATVSAFALFVVGEGLEKRNDDFAAEVAAQAAAARA >gi|301349794|gb|ADCQ01000056.1| GENE 22 22875 - 23600 1035 241 aa, chain + ## HITS:1 COG:RSc1406 KEGG:ns NR:ns ## COG: RSc1406 COG0528 # Protein_GI_number: 17546125 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Ralstonia solanacearum # 7 241 2 236 236 333 70.0 1e-91 MSKSETPKTKRILLKLSGEALMGDNAFGISRDTLKSIVGEIKEVVDLGVQLAIVVGGGNI FRGVALGSTGMDRATGDYMGMLATCMNAMALQDALRNAGVEARVQCALDIDQVAEPYIRG KALSHLKKGRVVIFAAGTGNPFFTTDTAAALRSAEIGADMVLKATQVDGVFTADPKKDPN AKMYKSLTFDEAIQKKLKILDATAFTLCRDQGMPIRVFNLHKPGALKRVVLGEDEGTLVH V >gi|301349794|gb|ADCQ01000056.1| GENE 23 23674 - 23820 294 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKIEKMFGAILKDQEQKSDELRDKIHAENKLKKEEAEKSSEREKAEK >gi|301349794|gb|ADCQ01000056.1| GENE 24 24067 - 24627 808 186 aa, chain + ## HITS:1 COG:RSc1407 KEGG:ns NR:ns ## COG: RSc1407 COG0233 # Protein_GI_number: 17546126 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Ralstonia solanacearum # 1 186 1 186 186 238 69.0 5e-63 MTTKDIYSQSEHHMKRSIETLKENLMKIRTGRAHTGLLEHITVDYYGCPTPISQVAQLGL ADARTITVQPWEKKMVAVVEKAIRNSDLGLNPATSGEVIRVPMPPLTEERRRDLTKVVRS EGEETKVAIRNLRRDANNKVAALVKEKEISEDDERRSNTEIQKLTDKYIGEVDKLIAEKE KEIMTV >gi|301349794|gb|ADCQ01000056.1| GENE 25 24643 - 25389 418 248 aa, chain + ## HITS:1 COG:RSc1408 KEGG:ns NR:ns ## COG: RSc1408 COG0020 # Protein_GI_number: 17546127 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Ralstonia solanacearum # 3 242 4 247 258 269 53.0 4e-72 MTSQELTAKPRERVPRHVAIVMDGNGRWAKARKLPRLMGHQKGVESVRTAIQTAAKAGVQ HLTLFAFSSENWNRPAEEVKGLMKLFLVSLRREIAALNKANVRVRLVGDLTAFSEELQQQ IADSMKITENNTGLTLNVCVNYGGRWEILEAAKRSREVPPEELTEQRFASLLPLADSGDV DLFIRTSGEERISNFMLWQLAYGELYFTKILWPDFTENEFLNALNWYSNRERRFGKTSEQ IQQEAKKE >gi|301349794|gb|ADCQ01000056.1| GENE 26 25393 - 26247 881 284 aa, chain + ## HITS:1 COG:HI0919 KEGG:ns NR:ns ## COG: HI0919 COG0575 # Protein_GI_number: 16272856 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Haemophilus influenzae # 1 281 1 287 288 101 29.0 2e-21 MLLQRVITAVVLLIIIIGALLISPLAFTAVAAIAIGCCFWEWLRICKWNNGVAMVCGVLL AAFLFFLEYVSPAALQTIQSGNGLMIITAVATVLWAVITAVIFTRRASGWMVPKGIGALL AWIFVPAAWFSLMYLFREKGTIYMLSVLAIVWVADIVAYFGGRCLGGPKMAEGISPKKTW SGALTAFVSVLALSYVLYWAQPSFPLWTNALISHLTGWASALILIVVVLFSIAGDLFESA LKRSAGVKDSSNLLPGHGGFYDRLDAQMSVLPLTVFILLFLQGY >gi|301349794|gb|ADCQ01000056.1| GENE 27 26257 - 27435 974 392 aa, chain + ## HITS:1 COG:PM1988 KEGG:ns NR:ns ## COG: PM1988 COG0743 # Protein_GI_number: 15603853 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Pasteurella multocida # 1 386 7 402 405 365 49.0 1e-100 MESIAILGATGSIGKSSLDVISRYPDRFTVYAVTANSSVKKLAQAAKDSGAKVAVIADKE LLGALQEELRAAGSTAEALAGSKAIDEIAANPEVDIVIGAIVGAAGISSTFKAAEAGKKL LLANKESVVCGGRILMDAIKASGAVLMPVDSEHNAIFQCLVGATKKARCEANIILTCSGG PFRQRQDLSDVTVEEATHHPNWSMGKKITVDSATLMNKGLEVIEARWLFDFEPERIQVVV HPQSVIHSMVQYADGVVIAQMGAPDMRNTIAYSLGFPERLDAGVEPLNFSKIKTLTFEEP DLKRFPQLGYAYDALKLGGAASIVLNAANEIGVEAFIQGKIGFTDIARLCHAMMYGFQPP TPTNLEEILETDKEARKLAQSWLEGFCDKLEN >gi|301349794|gb|ADCQ01000056.1| GENE 28 27438 - 28799 943 453 aa, chain + ## HITS:1 COG:RSc1411 KEGG:ns NR:ns ## COG: RSc1411 COG0750 # Protein_GI_number: 17546130 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Ralstonia solanacearum # 4 452 1 458 462 327 41.0 2e-89 MTLLTTIAAFAVTIGILITFHELGHYLVARLCGVKILRFSLGFGKPIFIYKRKNDPDATE WAVSALPLGGYVRMLDARDPACLPIKPEDKNREFGAKNVWQRFAIVAAGPFANLLLAVLL YASIFMIGSTQPTPVVAEPPAGTPAAMAGLHAGDKILKVGDSEIKTFTDLRMEMLNKFGS TTDILVHRPNGSEVTKEIDLTKMSLDPKAKDADPFDEVGLHLNMGHPFISSFVENSAAQR DGIKIGDHIYRVGNVPVKMPKDFVSEIKKYPGKPVTLLVGDENGPTHTLEVTPAAAMDEQ GNEIGRIGAAIGVDFPHTQVSYGLLKSLAEGVKKTWDTAAMSVRMIGKMFTGDVSISNIS GPVTIADYAGQTAQLGILPFISFLALVSISLGILNLLPIPMLDGGHLLYYSLEVVTGKPV SEAVQASAQKIGIAALFGLTILALFNDLTRLLP >gi|301349794|gb|ADCQ01000056.1| GENE 29 28837 - 31170 2577 777 aa, chain + ## HITS:1 COG:RSc1412 KEGG:ns NR:ns ## COG: RSc1412 COG4775 # Protein_GI_number: 17546131 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Ralstonia solanacearum # 13 777 12 765 765 762 50.0 0 MPHPKKIALACALALAATTVLAQGHVIKDIRLEGISRTEAGTVFSHLPIRVGDTYSPELG AESLRSLYASGMFQDVQLDMDGNVLVVRVQERPTVANIHTTGISEFDAKGVEKSLRDVGL AEGFIFDRAVLDRAVQELRRQYLSRGRYSADVKVTVTPVERNRVRINIDVDEGPAAKIQQ IRFVGNKVYDEGDLRDEMQLGTPNWFSWYTKRDQYSREKLTADLEAIRALYNNNGYLDFK IDSTQVSVSPDKSEIFVTINIDEGKKYTIKDIRLTGDMLGLEPEFEDLVDIKPGSVYNAS EVNGLAKKFTDRLSALGYAFARAIPNPVVDPENPDEVSVVYTIDPGRRVYVRKVNITGNT RTQDEVIRREVRQYEASWFDSDKVAVSRDRIDRLGFFETVTAEPEPVPGSPDEVDLAVNV KERPTGNISIGAGYSTSEGIVLSGGFSQNNVFGTGNSLSLEVNTSKSSRTYAASFTQPYI TTSGISQSFEIYDRKLDLDELEITDDVKYETYGAGVTYGVPITENDQIFLGGKFEMTDVT VGSGAPRRYVDYVNDYGKKPKSIAATIGWSRDTRDNILAPTRGRYQRLFGEISLPVLDLK YYRATYQFQQFVPVTKSITFAFNTELGYGDGYAGKQYPFFKNFYGGGIGSVRGYDTSSLG PRDTDGDASGGNRKLNFSLELLTPIPGADRTLRMFTFLDGGWVWGRKAFYKQAANGSYVV DRYEKDKLDLGDLRYSVGFGLAWISPMGPLKLSFAFPLNKKDSDELQRFQFQIGTGF >gi|301349794|gb|ADCQ01000056.1| GENE 30 31214 - 31711 584 165 aa, chain + ## HITS:1 COG:RSc1413 KEGG:ns NR:ns ## COG: RSc1413 COG2825 # Protein_GI_number: 17546132 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Ralstonia solanacearum # 21 164 34 177 184 117 55.0 9e-27 MQKKWLAVALVSALVCSAATAVQAEVKIGVVSTEVILRDSAAAQAASKKLEQEFSKRDKE LNAAGQRLKNDVERFEKNAGTMTEQERIRKQRDLAERDRDFQRRQRELREDFNQRRNEEL QKLLRQANTVIKNIAQREKYDLILQEAIYVNPKIDITDQVLKELK >gi|301349794|gb|ADCQ01000056.1| GENE 31 31865 - 32953 1194 362 aa, chain + ## HITS:1 COG:NMB0180 KEGG:ns NR:ns ## COG: NMB0180 COG1044 # Protein_GI_number: 15676107 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Neisseria meningitidis MC58 # 33 356 21 340 348 225 40.0 1e-58 MIQQTAPMTLLELVDRIKEKSNDTLLSTISANGGKAEIKSIAPLETAGHGDVAFLANSKY RDAAGACKATALVLTEEDKQAIWGEKEPERIVVITRNPYAWFAYALQIIFPQEQPEPGVD TRAVVEDGAVIDSTATVEAGVVIRKGAQVGPYCFVGANSVIGEGVVLGEHTRIYPNVTIY YGCRIGRRNIIHSGAVIGADGFGFAPLDRQYVKIPQIGAVETGDDVEIGANTCIDRGALQ NTTIGQGTKIDDLVMIGHNCQVGKNVVLSGRTGLAGSTIIGDNVQAGGGSGFAGHLKVAA GSIIGGGAGVPSSIEKPDYYAGYMPAMPHREFYNILSVIKRLPEMRRQLKHLAEKVDSLK KE >gi|301349794|gb|ADCQ01000056.1| GENE 32 32955 - 33395 522 146 aa, chain + ## HITS:1 COG:RSc1415 KEGG:ns NR:ns ## COG: RSc1415 COG0764 # Protein_GI_number: 17546134 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Ralstonia solanacearum # 3 146 16 159 164 160 55.0 1e-39 MQDINDIMRLLPHRYPFLLVDRVLETNGVDKLIAIKNVTVNEPQFTGHFPGVPVMPGVLI IEAMAQACAMLAFARMGGERDPEKLFYFASIDNARFKRVVIPGDQLRFECTFLREKLGMI KMHCDATVDGQLAACADMMCSYRSPK >gi|301349794|gb|ADCQ01000056.1| GENE 33 33406 - 34200 1050 264 aa, chain + ## HITS:1 COG:PM1996 KEGG:ns NR:ns ## COG: PM1996 COG1043 # Protein_GI_number: 15603861 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Pasteurella multocida # 2 264 6 262 262 270 52.0 3e-72 MAQIHPSSLVDPQAKLAENVVVGPFCTIGPHVEVGEGTTLQSHIVLTGHTKIGKNNKIYA FAAIGIDPQDKKYRGEETQLIIGDNNVIREHCTLSVGTVQDKGITIIGNGNLLMANVHVA HDCVIGNDTIIANNVGFAGHVHVADDVIVGGQSGIHQFVKIGKGAMLSGGSMVRQDCIPY GMYQGYPASPFGINLEGMKRHGYSRAAMHAARESYKLIFREGKTVPEAVEAIKAYASALE DEQAKKVCELMCEFTEQATRGLAR >gi|301349794|gb|ADCQ01000056.1| GENE 34 34200 - 35351 700 383 aa, chain + ## HITS:1 COG:RSc1417 KEGG:ns NR:ns ## COG: RSc1417 COG0763 # Protein_GI_number: 17546136 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Ralstonia solanacearum # 12 382 15 385 390 299 45.0 5e-81 MEQLTNNSIIWAAGENSGDYLASRVLPAVAASRPNLKMEGIGGNRMIQDGLDPWFHASEL SVRGYLEVIRHLPRILKIRREMMRRTVQLRPAAYIGVDAPDFNLSIEEKVRASGIPVVHM VAPAVWAWRPQRIHQIKRAVDHLLLIFPFEEKIFKEAGIPSTYIGHPLAEIIPMVPDTEG ARRKLNIAAQGAVIAILPGSRKDEIRWCAPAFFGAASLLLKQEPRTRFIVPGADEQRKKE ILEVLNRFPDVEDNTVLLDGKSHLAMEAADAILVASGTATLEAALYKKPLVVGYAMPALS AMLILSKGQTKWISLPNILAQKTLVPECVQMFCSPEILSSHLLHALEPKRQEYLKEVFSE MHETLLRPTAQLATEAIDQVLKR >gi|301349794|gb|ADCQ01000056.1| GENE 35 35351 - 35992 419 213 aa, chain + ## HITS:1 COG:RSc1418 KEGG:ns NR:ns ## COG: RSc1418 COG0164 # Protein_GI_number: 17546137 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Ralstonia solanacearum # 15 194 28 210 236 195 58.0 7e-50 MADYLFDGEETIATLVCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREV LAEQIKTHALAWAIAESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPELP FRAEPIVKGDDLIPEISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEK WGPCPVHRMTFGPVALIAKKFERRADRKKRKGQ >gi|301349794|gb|ADCQ01000056.1| GENE 36 35993 - 36799 175 268 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 43 261 17 246 255 72 26 6e-12 MEFMRITSAANPSIKLAKNLAQHSRAARKEGLSLAEGIHLARELLSHPELVRKVFLREGA EKNFEISEILQKYLSLKISVVQLPSQIYASISPVDTSAGIVCEIRIPEEGKIKKDEDWIY LDGVQDPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFFCNIISSVELAE IKEKTGAVCLVADARGGKDLYEEKWGKGQTLWVFGSEGLGVSEKALELSDLTLLIPLDSR VESLNVATAASVCLFEQRRRRLSGIAHK >gi|301349794|gb|ADCQ01000056.1| GENE 37 36850 - 37716 804 288 aa, chain - ## HITS:1 COG:RSc1420 KEGG:ns NR:ns ## COG: RSc1420 COG1806 # Protein_GI_number: 17546139 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 11 285 7 279 279 320 58.0 2e-87 MNSNVNETPEKPTQRTVFFVSDATAITAETLANAVLAQFHGLKYLRYRMPFVNTEEKAKA AALRINEVGKENGVRPIVFSTLVAGSLASTFNEYCNAFVIELFRSFVGPLERELGVPSDH SVGKSHEIGDQERYNRRIDAINYTLAHDDGQTNKGLEDADVVLVGVSRSGKTPTSLYLAM QYGIKAANYPLIPEDFERGELPPALENCKDKIFGLSISPKRLSEIRGERRPNSKYASIEN CEYEVEEAQRMMDREGIKYLSSTSKSIEEISATILLELKINIDPHMSM >gi|301349794|gb|ADCQ01000056.1| GENE 38 37808 - 40189 3073 793 aa, chain + ## HITS:1 COG:RSc1421 KEGG:ns NR:ns ## COG: RSc1421 COG0574 # Protein_GI_number: 17546140 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Ralstonia solanacearum # 4 788 8 793 795 1120 70.0 0 MTQGRFVIPFSQLRMTDVDIVGGKNASLGELLSQLTEAGIRVPDGFATTAEAFRVFLKEG GLDKRIEDRLSKLDVDDVKELAKAGAEIREWIEKAPFPAQLEKEIREHYEWLKGDQKEIS VAVRSSATAEDLPDASFAGQQETYLNVVGLEQVFARMKEVFASLYNDRAISYRVHKGFDH ADVALSAGVQRMVRSDKGAAGVMFTMDTESGFDQVVFITASYGLGETVVQGAVNPDEYFV HKPIMEMGKFPIIRKVLGSKKIKMIFDTDKSSGRSVKVVDVPESERRKFALNDDEIVQLA KYARIIEKHYGRPMDIEWGKDGIDGKLYILQARPETVKSRQKKADVQQKFVLLGKGEVLV TGRAIGQKIGAGKVRIVAGPEQMDLVQEGDVLVTDMTDPNWEPVMKKASAIVTNRGGRTC HAAIIARELGIAAVVGCGDATEVLKDGQEVTVSCAEGDTGNIYNGLIPFEIKEVKQGELP EIPVKIMMNVGNPQLAFDFQSIPNNGVGLARLEFIINNNIGIHPKACLAYPDLPEDLRRA VEEASAGYENPREFFKEKIAEGVATIAAAFYPKKVIVRMSDFKSNEYRKLLGGKLYEPEE ENPMLGFRGASRYVSEDFKECFAMECEALKKVRDEMGLTNVEIMIPFVRTVKEAKEVNER LNEQGLKRGVNGLRLNMMCEIPSNALLAEKFLEHFDGFSIGSNDLTQLTLGLDRDSGLVA NFFDERDEAVKILLARAIKACREKGAYVGICGQGPSDHPDLAQWLMEEGIESISLNPDTV VNTWRRLAKDVKK >gi|301349794|gb|ADCQ01000056.1| GENE 39 40308 - 40730 249 140 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859092|gb|EFL82175.1| ## NR: gi|302859092|gb|EFL82175.1| putative membrane protein [Burkholderiales bacterium 1_1_47] # 1 140 1 140 140 244 100.0 2e-63 MGLSYFWFIAAAVIGAMDLYFGNFFLLVISAAAFTTALFSFFLSSVYLQVAIFTVISLLV ISYLMLLQRHLREVDFYSEILRRHIGKTVTVHEWRHNRYATVQYNGRVWEAEIAFNAGGN LRAGKYKIWKMLSNRLVLIP >gi|301349794|gb|ADCQ01000056.1| GENE 40 40691 - 41212 489 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859093|gb|EFL82176.1| ## NR: gi|302859093|gb|EFL82176.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 173 1 173 173 301 100.0 8e-81 MENAFEPASSDSVEGKIPEGVRLPNLDDPLVIKDLLRAHAMAVSKRLAEAVHKNVRREEV VQADQRAAAFLATTLLGQNPAYAKAAVNTPERIEKLLRAEFTEALKGFGIKEEEAADPAV FMQLVMFLFTNQVHELINELQKNPDEIEAKGPQALDALLESWVKKLTKEKCDA >gi|301349794|gb|ADCQ01000056.1| GENE 41 41205 - 41738 524 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859094|gb|EFL82177.1| ## NR: gi|302859094|gb|EFL82177.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 177 1 177 177 349 100.0 3e-95 MPKCIKPSCNRGCCGHDHSSKAEQAPSIVDIEVVRKILSQAVVNMCKRAIACAEGELTRD ELAEKDMKLMEWLGETFCGNNSHFEPGPEDWTTEGLAEYIKQALPQIEENPEGEEMSSDE VVVKACAIFVGEAYKAIHDALKAGFPLLDADELPAPVASFVESWTLLFVGAPMGSNN >gi|301349794|gb|ADCQ01000056.1| GENE 42 41760 - 42929 1481 389 aa, chain + ## HITS:1 COG:BS_yugJ KEGG:ns NR:ns ## COG: BS_yugJ COG1979 # Protein_GI_number: 16080189 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Bacillus subtilis # 1 386 1 384 387 291 42.0 2e-78 MNNFEYSNPTRLVFGKGEESRIGELMRARVPAMSPVLVVYGGGSAKESGLLERISESLKA ADLVPIELGGVTPNPQLSFVQKGILLAREHRVKAILAVGGGSVIDASKAIAIGVPYVGDV WDFFTKKITPTEALPVAAVLTLPAAGSEQSIRIVISNGDRKLGAGSPLVRPFVSVIDPEL FFTLPEKQIRAGVIDMMSHIMERYFTQTKNTDFVDSQAESAMKTIMKNGLKLKKNPKDYD AWCQIGLAGSFAHNGYYGLGQVEDWASHGMEHELSAWDTTITHGEGLAVVVPAWMKYVWH ANPKRFVQFARNVMGVKGEGTDEEIIRKGIKAFRRFLKKMGAPKNLKELGAEKADPKELA KKAVEIPGKLGNFLPLYEKDIVKIYKLMR >gi|301349794|gb|ADCQ01000056.1| GENE 43 42926 - 43498 388 190 aa, chain - ## HITS:1 COG:RP819 KEGG:ns NR:ns ## COG: RP819 COG1502 # Protein_GI_number: 15604650 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Rickettsia prowazekii # 21 163 51 193 205 103 38.0 2e-22 MKYFLLCLAQAAAISLAAPASASPFYPTEAAVFFSPNGGAENAIVQSIDSAKVRIRMQAF LFSNKEITQALIRAHQRGVKVDVIIDKKMPKKKPNTTEDLLKTGVPTFFDTAHRTAHDKI IIVDDNIVLTGSFNFVKVAETKNGENLLILKSKPLAEEYVKNWEKHFSHSVLAAPEKEKG TEVPLTKNQN >gi|301349794|gb|ADCQ01000056.1| GENE 44 43543 - 44001 471 152 aa, chain - ## HITS:1 COG:RSc1424 KEGG:ns NR:ns ## COG: RSc1424 COG0691 # Protein_GI_number: 17546143 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Ralstonia solanacearum # 1 147 1 147 148 169 58.0 1e-42 MAIIQNKKARFDYEIEEKFEAGLELRGWEVKSIRAGGASIKEAHVFVRNGELFLLNANIT PLKTASTHEKADPTRNRKLLLHKHEIMRLIGRVEQAGYSLIPLDMHFKDGRVKLELGLGK GKKLFEKRADIGKREWKREQGRLLKNRTLNRK >gi|301349794|gb|ADCQ01000056.1| GENE 45 44118 - 44405 163 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859098|gb|EFL82181.1| ## NR: gi|302859098|gb|EFL82181.1| protein RnfH [Burkholderiales bacterium 1_1_47] # 1 95 1 95 95 159 100.0 6e-38 MLLSAVKQTPSGLLKKVLELPEGSTVGDALRALGWQKTEEIGLSIYGRRCKEEDLLKDGD RIELTEPLRIDPKEARRLRALNKPLLATRGRKHAK >gi|301349794|gb|ADCQ01000056.1| GENE 46 44498 - 45964 2192 488 aa, chain + ## HITS:1 COG:RSc1429_3 KEGG:ns NR:ns ## COG: RSc1429_3 COG0516 # Protein_GI_number: 17546148 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Ralstonia solanacearum # 198 487 1 290 290 440 76.0 1e-123 MRLLQKALTFDDVLLVPAYSNVLPRETVLSTQFTRDLRLNIPFCSAAMDTVTEANLAIAL AQEGGIGIIHKNMTAQAQAAEVNKVKRHEAGMVADPITIGPDMIVADVIRLTREHNISGL PVVQGEKVLGMVTHRDLRFEDRMDAKISEIMTPAERLITIKEGATLDDAKKLMHEHRLER VLVVDDNFHLRGLMTVKDIIKATEHPYASKDKHGKLLAGAAVGVGAGTEERVELLVDAGV DVLVVDTAHGHSQGVLDRVKWVKQHYPQVQVIGGNIATATAALALVENGADAVKVGIGPG SICTTRVVAGVGVPQITAVSNVAEALQGSGVPLIADGGIRFSGDVAKAIAAGANTVMMGG MFAGTDEAPGEIILYQGRSYKSYRGMGSLGAMNKGSADRYFQDNNNGNVDKFVPEGIEGM VPYKGSVLAIIYQMCGGLRSSMGYCGCRTIDEMRNKACFVEITSAGWRESHVHDVKITKE APNYRLEH >gi|301349794|gb|ADCQ01000056.1| GENE 47 46068 - 47633 1768 521 aa, chain + ## HITS:1 COG:RSc1431_2 KEGG:ns NR:ns ## COG: RSc1431_2 COG0519 # Protein_GI_number: 17546150 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Ralstonia solanacearum # 203 521 1 338 338 514 75.0 1e-145 MNHDRILILDFGSQVTQLIARRIREAHVYCEVHSCDVSDGFIKEFKPSGIVLSGSHMSAY EESTDRAPKAVFEIGVPVLGICYGMQTMAEQLGGKVESGAQREFGYAEVREHGHTKLLKN ISDFTDKDGKSYLKVWMSHGDKVTEMPPGFKLMCSTPTCPIAGMADEERGFYAVQFHPEV THTEKGREILETFVLKICKATPDWVMGNFAQEAVEKIRHQVGKDEVILGLSGGVDSSVTA ALIHRAIGDQLSCVFVDNGLLRLHEREQVAQTFRDNMGMKLIVVDASDRFMDALSGVTDP EAKRKIIGRLFVEVFQEEAEKLQNAKWLAQGTIYPDVIESNGAKTKKAQTIKSHHNVGGL PDTLHLKLLEPLRELFKDEVRELGIALGLPAEMVYRHPFPGPGLGVRILGAIKREYADLL READAIFIEELRNAGWYDKVSQAFVVFLPVKSVGVMGDGRTYDWVVSLRAVQTSDFMTAK WAHLPYDLLGKVSNRIINEVKGINRVVYDVSGKPPATIEWE Prediction of potential genes in microbial genomes Time: Fri May 13 06:54:43 2011 Seq name: gi|301349793|gb|ADCQ01000057.1| Burkholderiales bacterium 1_1_47 cont1.57, whole genome shotgun sequence Length of sequence - 86780 bp Number of predicted genes - 78, with homology - 69 Number of transcription units - 38, operones - 19 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 252 90 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein - Prom 276 - 335 3.1 2 2 Tu 1 . + CDS 2957 - 3739 254 ## EcHS_A2644 putative addiction module + Prom 3769 - 3828 5.1 3 3 Op 1 . + CDS 4007 - 4573 376 ## gi|302859102|gb|EFL82185.1| hypothetical protein HMPREF0189_01905 4 3 Op 2 1/0.500 + CDS 4588 - 5433 305 ## COG0590 Cytosine/adenosine deaminases 5 3 Op 3 1/0.500 + CDS 5426 - 6334 521 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF 6 3 Op 4 1/0.500 + CDS 6331 - 8217 1355 ## COG0642 Signal transduction histidine kinase + Prom 8227 - 8286 1.7 7 4 Op 1 32/0.000 + CDS 8413 - 10155 2048 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 8 4 Op 2 15/0.000 + CDS 10155 - 10649 663 ## COG0440 Acetolactate synthase, small (regulatory) subunit 9 4 Op 3 . + CDS 10688 - 11704 1453 ## COG0059 Ketol-acid reductoisomerase - Term 11717 - 11754 10.1 10 5 Tu 1 . - CDS 11775 - 12677 1060 ## COG1561 Uncharacterized stress-induced protein - Prom 12925 - 12984 3.5 + Prom 12773 - 12832 1.8 11 6 Op 1 8/0.000 + CDS 12852 - 13589 759 ## COG0689 RNase PH 12 6 Op 2 13/0.000 + CDS 13596 - 14195 469 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein 13 6 Op 3 . + CDS 14197 - 15336 628 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 15363 - 15399 5.2 + Prom 15444 - 15503 5.1 14 7 Op 1 5/0.250 + CDS 15638 - 17059 1638 ## COG0174 Glutamine synthetase 15 7 Op 2 14/0.000 + CDS 17117 - 18184 678 ## COG3852 Signal transduction histidine kinase, nitrogen specific 16 7 Op 3 . + CDS 18181 - 19605 891 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 17 7 Op 4 . + CDS 19629 - 20654 445 ## COG0820 Predicted Fe-S-cluster redox enzyme + Term 20655 - 20695 1.2 - Term 20598 - 20631 2.8 18 8 Op 1 . - CDS 20637 - 21434 655 ## COG0708 Exonuclease III 19 8 Op 2 1/0.500 - CDS 21431 - 23485 1999 ## COG0339 Zn-dependent oligopeptidases 20 8 Op 3 1/0.500 - CDS 23496 - 24359 869 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 24381 - 24440 3.6 - Term 24468 - 24499 2.1 21 9 Op 1 8/0.000 - CDS 24521 - 25198 718 ## COG4566 Response regulator - Prom 25218 - 25277 7.1 22 9 Op 2 . - CDS 25364 - 27775 2056 ## COG0642 Signal transduction histidine kinase - Prom 27836 - 27895 2.8 23 10 Tu 1 . - CDS 28981 - 29088 61 ## - Prom 29191 - 29250 3.5 24 11 Tu 1 . - CDS 29268 - 29498 149 ## gi|302859123|gb|EFL82206.1| hypothetical protein HMPREF0189_01926 25 12 Tu 1 . + CDS 29549 - 29683 81 ## - Term 30407 - 30448 -0.3 26 13 Tu 1 . - CDS 30497 - 32284 905 ## COG1292 Choline-glycine betaine transporter - Term 32790 - 32836 2.7 27 14 Tu 1 . - CDS 32859 - 32984 84 ## - Prom 33158 - 33217 1.6 28 15 Op 1 . - CDS 33395 - 34285 349 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 29 15 Op 2 . - CDS 34272 - 36140 798 ## COG0550 Topoisomerase IA 30 15 Op 3 . - CDS 36146 - 37228 685 ## COG4227 Antirestriction protein 31 15 Op 4 . - CDS 37225 - 37455 90 ## gi|302859129|gb|EFL82212.1| hypothetical protein HMPREF0189_01932 32 15 Op 5 . - CDS 37510 - 37938 343 ## gi|302859130|gb|EFL82213.1| putative type II restriction modification enzyme methyltransferase 33 15 Op 6 6/0.250 - CDS 37972 - 40530 1594 ## COG3505 Type IV secretory pathway, VirD4 components 34 15 Op 7 . - CDS 40517 - 41593 632 ## COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 35 15 Op 8 . - CDS 41590 - 42450 87 ## gi|302859133|gb|EFL82216.1| hypothetical protein HMPREF0189_01936 + Prom 42481 - 42540 2.4 36 16 Tu 1 . + CDS 42590 - 42760 79 ## 37 17 Tu 1 . - CDS 43402 - 44385 56 ## COG0583 Transcriptional regulator - Prom 44433 - 44492 7.5 + Prom 44423 - 44482 7.3 38 18 Tu 1 . + CDS 44522 - 46042 665 ## COG0165 Argininosuccinate lyase + Term 46079 - 46118 1.7 - Term 46064 - 46109 2.5 39 19 Tu 1 . - CDS 46159 - 47130 10 ## gi|302859136|gb|EFL82219.1| hypothetical protein HMPREF0189_01939 - Prom 47301 - 47360 2.4 40 20 Op 1 . - CDS 47459 - 50473 1753 ## ECSP_3222 hypothetical protein 41 20 Op 2 . - CDS 50475 - 51002 380 ## gi|302859138|gb|EFL82221.1| conserved hypothetical protein 42 20 Op 3 . - CDS 51018 - 52256 781 ## gi|302859139|gb|EFL82222.1| hypothetical protein HMPREF0189_01942 - Prom 52498 - 52557 5.7 + Prom 52227 - 52286 6.3 43 21 Op 1 1/0.500 + CDS 52306 - 52620 153 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system 44 21 Op 2 . + CDS 52613 - 52921 188 ## COG2944 Predicted transcriptional regulator + Term 53126 - 53164 7.6 + Prom 53404 - 53463 5.7 45 22 Op 1 . + CDS 53646 - 53924 110 ## 46 22 Op 2 . + CDS 53941 - 54165 64 ## gi|302859142|gb|EFL82225.1| conserved hypothetical protein + Term 54352 - 54402 3.1 + Prom 54229 - 54288 5.9 47 23 Op 1 . + CDS 54528 - 57776 1379 ## COG3468 Type V secretory pathway, adhesin AidA + Prom 57781 - 57840 2.2 48 23 Op 2 . + CDS 58045 - 58317 130 ## gi|302859144|gb|EFL82227.1| conserved hypothetical protein + Term 58454 - 58504 12.0 - Term 58436 - 58492 11.1 49 24 Op 1 11/0.000 - CDS 58522 - 59733 853 ## COG2948 Type IV secretory pathway, VirB10 components 50 24 Op 2 8/0.000 - CDS 59734 - 60582 662 ## COG3504 Type IV secretory pathway, VirB9 components 51 24 Op 3 . - CDS 60579 - 61328 691 ## COG3736 Type IV secretory pathway, component VirB8 + Prom 61297 - 61356 8.0 52 25 Op 1 . + CDS 61386 - 61661 331 ## gi|302859148|gb|EFL82231.1| toxin-antitoxin system, antitoxin component, AbrB famil 53 25 Op 2 . + CDS 61658 - 62011 266 ## COG2337 Growth inhibitor + Term 62233 - 62270 -0.9 54 26 Tu 1 . - CDS 62017 - 62259 228 ## gi|302859150|gb|EFL82233.1| hypothetical membrane protein with putative acetylase function - Prom 62355 - 62414 2.3 + Prom 62225 - 62284 3.6 55 27 Tu 1 . + CDS 62314 - 62625 321 ## ebD107 putative phage-like regulator protein 56 28 Op 1 . - CDS 62644 - 64314 1102 ## COG3704 Type IV secretory pathway, VirB6 components 57 28 Op 2 . - CDS 64327 - 65049 547 ## Bpet3708 type IV secretion system protein VirB5 58 28 Op 3 . - CDS 65052 - 67514 1274 ## COG3451 Type IV secretory pathway, VirB4 components 59 28 Op 4 . - CDS 67518 - 67826 215 ## gi|302859155|gb|EFL82238.1| type IV secretion system protein virB3 60 28 Op 5 . - CDS 67845 - 68123 365 ## gi|302859156|gb|EFL82239.1| conjugal transfer protein TrbC 61 28 Op 6 . - CDS 68149 - 68895 402 ## Mrad2831_6321 lytic transglycosylase catalytic + Prom 68699 - 68758 2.9 62 29 Tu 1 . + CDS 68803 - 69255 284 ## gi|302859157|gb|EFL82240.1| toxin-antitoxin system, antitoxin component, HicB family + Prom 69262 - 69321 3.5 63 30 Op 1 9/0.000 + CDS 69341 - 69607 176 ## COG3077 DNA-damage-inducible protein J 64 30 Op 2 . + CDS 69649 - 69882 219 ## COG3041 Uncharacterized protein conserved in bacteria + Term 69919 - 69974 7.2 65 31 Op 1 . - CDS 70021 - 79725 9557 ## gi|302859161|gb|EFL82244.1| putative autotransporter beta-domain 66 31 Op 2 . - CDS 79749 - 80030 366 ## gi|302859162|gb|EFL82245.1| hypothetical protein HMPREF0189_01965 - Prom 80180 - 80239 3.0 - Term 80114 - 80153 2.1 67 32 Op 1 . - CDS 80364 - 80573 199 ## gi|302859163|gb|EFL82246.1| hypothetical protein HMPREF0189_01966 68 32 Op 2 . - CDS 80570 - 80917 229 ## 69 32 Op 3 . - CDS 80934 - 81659 430 ## XCVc0027 putative secreted protein 70 32 Op 4 . - CDS 81662 - 81940 116 ## gi|302859165|gb|EFL82248.1| conserved domain protein 71 33 Tu 1 . + CDS 82227 - 82520 208 ## gi|302859166|gb|EFL82249.1| hypothetical protein HMPREF0189_01969 - Term 82406 - 82447 3.6 72 34 Op 1 . - CDS 82463 - 82741 108 ## 73 34 Op 2 . - CDS 82783 - 82977 212 ## - Prom 83013 - 83072 2.7 74 35 Op 1 . - CDS 83645 - 83950 188 ## 75 35 Op 2 . - CDS 83981 - 84292 248 ## gi|302859168|gb|EFL82251.1| conserved hypothetical protein - Prom 84312 - 84371 7.6 + Prom 84271 - 84330 6.3 76 36 Tu 1 . + CDS 84488 - 85129 127 ## gi|302859169|gb|EFL82252.1| hypothetical protein HMPREF0189_01972 - Term 84965 - 85015 7.3 77 37 Tu 1 . - CDS 85173 - 85340 115 ## gi|302859170|gb|EFL82253.1| conserved hypothetical protein - Prom 85480 - 85539 9.7 + Prom 85508 - 85567 5.4 78 38 Tu 1 . + CDS 85610 - 86539 319 ## gi|302859171|gb|EFL82254.1| conserved hypothetical protein + Term 86626 - 86700 19.2 Predicted protein(s) >gi|301349793|gb|ADCQ01000057.1| GENE 1 3 - 252 90 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 83 1 83 181 150 100.0 2e-35 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGLSIPEIQ >gi|301349793|gb|ADCQ01000057.1| GENE 2 2957 - 3739 254 260 aa, chain + ## HITS:1 COG:no KEGG:EcHS_A2644 NR:ns ## KEGG: EcHS_A2644 # Name: not_defined # Def: putative addiction module # Organism: E.coli_HS # Pathway: not_defined # 1 258 1102 1363 1365 347 66.0 3e-94 MLKNGQDKEGEYLLNSYDVREAFQLLDRKSDLSLEEKARLEFSYLGILDVSSRGEDKHGI PNLELYTEQHPELFVQAIVWTYKRKNGGEDLIEGDKDSLAQCGYRFLEAIERIPGLNEAT KKEQQEKLSKWVEAVRRACADLDRLEVADEWLGNLFSHAPVGEDGVWPDEAVRNVMENIR SQFISRGAHMGLFNSRGAHFCGKGGAQERELANKYRVWADALQFTHPFVSSSLLMSMVYT YECEAERLDIETEIRSRVTL >gi|301349793|gb|ADCQ01000057.1| GENE 3 4007 - 4573 376 188 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859102|gb|EFL82185.1| ## NR: gi|302859102|gb|EFL82185.1| hypothetical protein HMPREF0189_01905 [Burkholderiales bacterium 1_1_47] # 1 188 3 190 190 351 100.0 1e-95 MKKIEIKKFKTTPDLAKMIEEGHKVHAMANGRIQSYERHTPQPEDYSNLDDFMEVAENHI DELYSTRKEVDEMLTEVFTVFVKHPELSGTPYIAVLELMVFLEEDFRQLTKRYEAASSAL AAMEENQYGCDDMDIYVGEHGARTMLNALDRLKKFGQLTNDEEGLESELKEGVANQSTDI NWQQPRLN >gi|301349793|gb|ADCQ01000057.1| GENE 4 4588 - 5433 305 281 aa, chain + ## HITS:1 COG:PM0078 KEGG:ns NR:ns ## COG: PM0078 COG0590 # Protein_GI_number: 15601943 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Pasteurella multocida # 127 276 6 155 166 167 52.0 2e-41 MPQQSDLISKFVKLSIRRGSSLASLSKSPDHLRIVVDTFRATARDPLDPDEEDAKKFLAE AGNWITDTAQNLLEVSASSIEQIVRFPLSELTSAVEAFREEIRQKRKHKALSREEEVRLS RIDRSRDEYFMREALVEAEKAHQAGEVPVGAVVVDKEGKIIGRGHNLVVAGHDPSGHAEI IALKNASQNLKNYRLDNCTIYVTLEPCPMCSGAIIGARLARLVYGAKDQKAGAAESVFKL FDEKRVNHHTDVTAGVLEEDCLRILQSFFVELRKSRGKTNG >gi|301349793|gb|ADCQ01000057.1| GENE 5 5426 - 6334 521 302 aa, chain + ## HITS:1 COG:RSc1452 KEGG:ns NR:ns ## COG: RSc1452 COG1619 # Protein_GI_number: 17546171 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Ralstonia solanacearum # 1 295 1 306 308 187 37.0 2e-47 MDKVGINAPSGNVIHFKSVERAAELFRERGWDVTIGEDVYTSFGRFGGSSDSARLNDFQQ ACSDNELVLCARGGYGFSRLLPNLDFNKIKSNGTWVAGFSDITFFTTAYLALTGGKSLQA PTASVLGDLKCDPYTIQTFFEVLAAEEYKFFFPTPFPDFQTTGLLWGGNLTVLCSMLGTK YFPKIEGGILFVEDIAEPAYKIERDLNHLLQAGVIDNQKAVVLGDFSKIKSSEHDFGYGL EDALSFIAGRTKTPFISGLPFGHEMKTATLVVGSEAHLNVQSNMAELTMKGCPNFRVAGV PK >gi|301349793|gb|ADCQ01000057.1| GENE 6 6331 - 8217 1355 628 aa, chain + ## HITS:1 COG:SMb20164 KEGG:ns NR:ns ## COG: SMb20164 COG0642 # Protein_GI_number: 16263912 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Sinorhizobium meliloti # 249 578 383 710 747 160 29.0 7e-39 MIFSAIKRLKTIFEPNPPEATNYHLHLSGARLASKVQLRQLSVLKHRTTAVVAIRMLLYL IFTLTCWSYVGGWVMALWLAFNVMHTLASMKSADDFFNEPSMDKRFHYWKNRTLQMILVS GLSIGFAGFYFMVPDNVIVEMILLAMIVGVTFGSVPLYAIWLPALWIFVPATLLPTILKL VLIYQPSLFIALFWTLILFLIIFYFGVRLNKIYLQGIYRSFEREFLMEQLIFQRQKADYI REASEMAISARTRFFAAANHDLRQPLQAMGIFISILQGQADQQAKPLIDNLSKACNTVAT LVDQILIISKLDSKTMKIRPTEVSIRSMFSELANEFTPMAEHKGLTFEVRAEPLMIVTDG LLFERVLRNLIGNAVRYTEHGGILLRAKKTKKNTLVVTVSDSGCGITKEDQAKLFQAYYR GGAGHKSREGFGLGLSIVDKICKLLNIELKLISKVGKGSIFRLEMAIETSVDTTEVQPPV QPNRIFSLEDVNVLLIEDDPLIRESLATLLEGWGAKVRRAEYFDAELAAQLIEEAPVDII FSDFNLGPSRLTGLQSIFRIRSVLGRKIPAIISTATSRDAIMAQYEEETEGLDFADSAVN LMELPLIVQKPVTPTEINRIIHREIEKK >gi|301349793|gb|ADCQ01000057.1| GENE 7 8413 - 10155 2048 580 aa, chain + ## HITS:1 COG:RSc2077 KEGG:ns NR:ns ## COG: RSc2077 COG0028 # Protein_GI_number: 17546796 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Ralstonia solanacearum # 9 580 16 585 585 801 65.0 0 MKSQEGSKPAERLNGSEILVRALAEEGVEYVFGYPGGSVLNIFDAIYKQDKFKHILVRHE QGAAHAADAYSRASNKVGVALVTSGPGATNAVTGIATAYADSIPMVIFTGQVNTLAIGQD AFQEVDIVGISRPCVKHNFLVKDVKDLAKTIKKAFYIAKTGRPGPVLIDIPKDVSAAICE YQYPENMELRSYKPLTKGHLGQIKKALQLILSAERPLIHIGGGIVSANASELLQRLAFEL GIPVNSTLMGLGAMPSDDKKFLGMVGMHGTYEANMAMQNCDVLIAIGSRFDDRVVGLPSN FAQPGRKIIHIDIDPTTISKRVKVDIPIVGDVKEVIADMLNLLETTDKRPDPEKLAAWQN RINGWREKDCLHYENSDTVIKPQYVLQKLQEIGGDDMIVATDVGQHQMWCAQFLKFRKPR HWLTSGGLGTMGVGLPYAIGACVAHPDKPVVCVTGDGSIQMNIQELATAKQLGVAPKIIL LNNNYLGMVRQWQELEYDRRYSHSHMEVTPDFKALAEAYGHIGIVVDRPEDVEQALKDAF GKYKDKLVFLDFHVDPTENVWPMVKAGRGLTEMILGSEKI >gi|301349793|gb|ADCQ01000057.1| GENE 8 10155 - 10649 663 164 aa, chain + ## HITS:1 COG:RSc2076 KEGG:ns NR:ns ## COG: RSc2076 COG0440 # Protein_GI_number: 17546795 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Ralstonia solanacearum # 3 164 2 163 163 232 78.0 2e-61 MNRHVLSILLENEPGALSRVVGLFFARGYNIESLTVAPTEDPTVSRMTIVSPGSTEIIEQ ITKHLNRLIEVIKVVDLTEGEYAERELMLVKVRAVGKDREEMKRLNDIFRGRIIDVTDKT YTIELTGNSDKLDAFLKAVDKECILEMVRTGSCGIGRGDRMLHL >gi|301349793|gb|ADCQ01000057.1| GENE 9 10688 - 11704 1453 338 aa, chain + ## HITS:1 COG:RSc2075 KEGG:ns NR:ns ## COG: RSc2075 COG0059 # Protein_GI_number: 17546794 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Ralstonia solanacearum # 1 338 1 338 338 496 72.0 1e-140 MKVYYDKDCDLSLIKGKKVAIIGYGSQGHAHAQNLHDSGVDVVVGVRKDGASWKKVEAAG LKVATIEDATKDADVVMILLPDEKIAEVYKKQIEPNLKEGAALAFAHGFNIHYGQVTPRA DLDVWMVAPKAPGHTVRRTYTEGSGVPQLIAVYQDKSGKAREVAMSYAAANGAGKAGIIE TTFKEETETDLFGEQCVLCGGIAELIKMGFETLVEAGYAPEMAYFECCHEMKLIVDLIYE GGLADMNYSISNNAEFGGYVTGPKVVSDQARAAMRKALSDIQDGSYAKNFLLENQVGAPM LRSIRAQTAAHPIEVVGARLRSMMPFISAHRHIDRSKN >gi|301349793|gb|ADCQ01000057.1| GENE 10 11775 - 12677 1060 300 aa, chain - ## HITS:1 COG:RSc2156 KEGG:ns NR:ns ## COG: RSc2156 COG1561 # Protein_GI_number: 17546875 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Ralstonia solanacearum # 4 300 2 311 311 241 44.0 1e-63 MSNISSMTGYANAKVQTDMGLLSIDMRSVNSRFLDLSFRASEEIRFLEPKFREIISGKIA RGKMECRLNLVDSGLSADTALNEEALNKLMALQTQVLKTDPSATALRVADILNYPGIVAA PVPDPEVFAKQVLTGFEQCLAAFNESRQREGAALAQVLLKYCTQIEDLVNTLRPKIPEIL QAQKDKLTERLEEALGTTLADGAQITKEEVNERIRQEITLYGIKLDVNEEMERLCTHVKE VRRTLDRGGPVGRKLDFLMQELNREANTLGSKAVSISMTDTSVNLKLVIESMREQIQNLE >gi|301349793|gb|ADCQ01000057.1| GENE 11 12852 - 13589 759 245 aa, chain + ## HITS:1 COG:PA5334 KEGG:ns NR:ns ## COG: PA5334 COG0689 # Protein_GI_number: 15600527 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Pseudomonas aeruginosa # 7 244 2 239 239 310 67.0 1e-84 MTEETWSRPSGRKADELRPIKITRHYTKYAEGSVLIEVGGTKVICTASVEEKVPGWLKDQ GKGWVTAEYGMLPRATGTRTDREAAKGKQSGRTQEIQRLIGRSLRAVVDMEALGERMIKI DCDVTQADGGTRCASITGAYVALADAVNWLIKNGSLEKSPLKGQVAALSVGIYEGVPVAD FDYDEDHLSDTDMNVVMTDAGKFVELQGTAEGEPFSREDLDALLKLAEDGLKQLFAAQRA ALAEE >gi|301349793|gb|ADCQ01000057.1| GENE 12 13596 - 14195 469 199 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 1 193 1 195 200 185 49 8e-46 MSKKIVLASNNKKKMKEMQELLAPMSAEVISQGSLGIPSAEEPFGTFVENALAKARWAAK HSGLPAIADDSGICSDALKGAPGVLSARFAGEPSSDAANNAKLIKELEDKDNRNAHYTCV IVAVRDENDPEPLIAIDFWNGTIGYEPKGEGGFGYDPFFIVTPDGKTAAQMTAEEKNAVS HRGKAMRKMRTLLTERWNW >gi|301349793|gb|ADCQ01000057.1| GENE 13 14197 - 15336 628 379 aa, chain + ## HITS:1 COG:NMA0864 KEGG:ns NR:ns ## COG: NMA0864 COG0635 # Protein_GI_number: 15793833 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Neisseria meningitidis Z2491 # 5 379 25 399 399 383 49.0 1e-106 MKELPLSLYIHWPWCLKKCPYCDFNSHGLRGPAPEALYEAAIIEGLKEQGARVQRGKLKS IFFGGGTPSLMAPETIGRIIEAADNNIPFHENIEITLEANPGTFEEQKFKDFREAGVNRL SIGIQSFDDAKLRALGRVHNSQEARRAAESAGKIFENFNLDLMFGLPGQTIQELDEELET AFSFGSTHLSCYQLTLEPNTYFAKFPPKGIPDDDVLSDMSDLVRDKTAARGFDHYEVSAY AKGGYRCRHNLNYWEFGDYFAVGPGAHGKITIQGRPERFYNYRDPARWLLSFKEHQTQIA ERKLIDPEDLPFEFMLNALRLREGVPFDFYTERTGLDFDVIESIWTELREKGLVCDHLKR IKTTEKGWLFLNEVLEAFL >gi|301349793|gb|ADCQ01000057.1| GENE 14 15638 - 17059 1638 473 aa, chain + ## HITS:1 COG:RSc1258 KEGG:ns NR:ns ## COG: RSc1258 COG0174 # Protein_GI_number: 17545977 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Ralstonia solanacearum # 1 472 1 470 471 739 73.0 0 MAKTSAEIMQMLVDNNVKFVDLRFTDFKGKEQHVSVPVSAFDEDKFEEGHAFDGSSIAGW KGIEASDMLLMPDPDSARMDPFADEDIPTMILTCNVVEPSTGKGYDRDPRSVANRAEAYL KSTGIGDNAYFGPEPEFFIFNGVSWGTTMNHSFFKIESEEGYWSNGKDMNGANSGHRPTV KGGYFPVPPVDSLYNVRSQMCELLEEQGVPVEVHHHEVGGCGQCEIGTLFSTLTKRADWT QILKYTVWNVAAAYGMTATFMPKPVVGDNGSGMHVHQSIWKDGKNIFAGNGYAGLSDTAL YYIGGVIKHARALNAITNPTTNSYRRLVPGFEAPVKLAYSARNRSASLRIPFVSSDKARR VEVRFPDPMANPYLAFSALLMAGLDGIQNKIHPGEAADKNLYDLPPEENAKIPTVCSSLE QALEALAADHEFLTAGGVFSEDLITSYIALKHEEVVRTQMAVTPEEYDMYYSS >gi|301349793|gb|ADCQ01000057.1| GENE 15 17117 - 18184 678 355 aa, chain + ## HITS:1 COG:RSc1260 KEGG:ns NR:ns ## COG: RSc1260 COG3852 # Protein_GI_number: 17545979 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrogen specific # Organism: Ralstonia solanacearum # 83 353 90 360 361 262 50.0 9e-70 MSFDAKRLESFDLLRLGLFACNKEGDILYANTAAQFLSGQSLKLLKERKLQYYLNSSDEW LANYRAHPEPSFLVPNELDHFLRPPAEPIPVLVTIHPFPDDENILLAEIVPADKTLQMTR ERHMNELSENTRRLLRNLAHEIKNPLGGIRGAAQLLEGELHDPENKEFTEVIISEADRLQ HLVDKILAPYRQLYHPVPTNVHEILERVRLLVQSEFPEGLKVVRDYDISVPEMMADRGQL TQISLNLMRNAAEALSEQIAQGTACITLKTRVVHHVQVGQSFCRTALNIHVIDNGEGIPK ELTDSIFYPLVSGKEQGSGLGLSLVQTFVEQHGGSISVSSEAGRTDFSILFPLSL >gi|301349793|gb|ADCQ01000057.1| GENE 16 18181 - 19605 891 474 aa, chain + ## HITS:1 COG:RSc1261 KEGG:ns NR:ns ## COG: RSc1261 COG2204 # Protein_GI_number: 17545980 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Ralstonia solanacearum # 1 471 1 502 502 600 61.0 1e-171 MKNVWIVDDDRSIRWVLEKALQKADIPCKTFSEAESVLQAIKKEQPALILSDIHMPGKSG LEMLAEIKKSYPKLPIIIMTAYSDLDSAVASFQGGAFEYLPKPFDIDKAIELVRRATEES EEEEQTPAEETASEIIGKAPAMQEVFRAIGRLSQSKATVLLTGESGAGKEVVARALHKHS PRSNAPFVAINMAAIPKDLMETELFGHEKGAFTGASAIRHGRFEQAEGGTLFLDEIGDMP AELQTRLLRVLSDGYYYRVGGHQSLKANVRIIAATHQNLEAMVRENRFREDLYHRLNVIR LRLPPLRERPEDIPLLVNHFLQKSAENLGVEPKLMSEEAMEFLKRFPFPGNVRQLENLCN WLVVMAPSQHIRVTDLPEEVRNGEAEKVHKNGEVSGSTPAGGSWEELLKGEVKEMLKNQS PDLMKQLADTFESIVIGTALEYTHGRRVDAATRLGIGRNTITRKIAELKLESED >gi|301349793|gb|ADCQ01000057.1| GENE 17 19629 - 20654 445 341 aa, chain + ## HITS:1 COG:PA1839 KEGG:ns NR:ns ## COG: PA1839 COG0820 # Protein_GI_number: 15597036 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Pseudomonas aeruginosa # 1 332 1 345 346 296 46.0 3e-80 MKIADIEQQLIQAGCKSVHIERFWRNWYSGKPLNRSKVRLPAAAEAILPQMEEYLANQLT AQEKAESETGTRWVLKAYDGQLIECVLLPREGVCVSTQVGCAVGCVFCMTGKSGLIRQLT DLEVAGQVQYAMRNAPVKKVVLMGMGEPSHNLRSVFSAVEHIVRYSGIGYKEVVISTVGD KRLFKALMESQIKPALAISLHSAMDEKRRSLLPRAAELTVKEILEFGAKYAEVGKYPIQY QWTLINGVNDGVDEIEALAPLWSRQAILNMIPVNAVEGSPYKRPSAEQIERIKEACRANG ILLKFRDSAAQDVDGGCGQLRARALKRKPAIQPAQELKIER >gi|301349793|gb|ADCQ01000057.1| GENE 18 20637 - 21434 655 265 aa, chain - ## HITS:1 COG:RSc1593 KEGG:ns NR:ns ## COG: RSc1593 COG0708 # Protein_GI_number: 17546312 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Ralstonia solanacearum # 5 263 3 266 269 249 49.0 3e-66 MSITITTWNVNSLKVRQPQVLDFLKETENSILCLQELKMQEADIDASAFKEIGYTLDAFG QKTYNGVATILRDPLTFLPDEEVRNIPGFEDPQSRLLAATVRVGCERLRVINGYFPNGET VESEKFPYKLSWLEALAEWLPSQLEQYPNLVLLGDFNIAPEDRDVWDPESWAESVLCTPK AREAFQRLIDLGLTDSFRAFEQPEKSYSWWDYRMMAFRRNRGLRIDHILISKALVSKNLG VEIHKKVRGNERPSDHAPVTLTLDL >gi|301349793|gb|ADCQ01000057.1| GENE 19 21431 - 23485 1999 684 aa, chain - ## HITS:1 COG:RSc1595 KEGG:ns NR:ns ## COG: RSc1595 COG0339 # Protein_GI_number: 17546314 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Ralstonia solanacearum # 13 681 18 700 706 660 49.0 0 MSDLINILSIIDDKSQLINFPKLDPNSFKPAVLTLIQRLKDTVKAVKSSNREPTWDTLVT PIEDASENLSYVWSVVEHLNSVADTPELRVTINELLPPISEVFSELGMDEKLYAKYKALK AEKAFEKFSATRQRVINKELEGFVLAGAELDEPGKKKMADINREEAELSQKFSENLLDCT NEFALYLPEDTDELKGVPEAELHLFAQQAAAEGAKGYKITLHMPNYLPIMQYAENRDLRE KMYHAYVTRASDFSPAGKDNLPIINRLLELRVEDAHLLGYKNFAEVSLVRKMAESPEQVV SFLRELAAKAKPAAEKEMEELIDYGRNQLGIKDVQTWDLSFISEKLREAKFSYSENEVKQ YFTEPAVLKGMFGLVEKMFSIKIKEKKAPVWNDDVKFFVIEDKEGKEIAGFYMDLYARSG KRGGAWMNDQISRREVNGKIQKPIAYLVCNFAAPVGDNPSLLTLRDVETIFHEFGHGLHH MLTRQTELAVSGISGVEWDAVEMPSQFMENFVLNWDVMQTITHHVKTGKTMPRELFDKLV AAKNYGAGMANVRQIEFALFDMLLHMDTHPEKDTVNKILNEVRKEVAIAFPPEYNRFANS FSHIFAGGYAAGYYSYKWAEVLSADAFSLFQEKGIFNPVVGNKWLDEVLSRGGSRPAMES FVAFRGRKPSVDALLRQYGLVESK >gi|301349793|gb|ADCQ01000057.1| GENE 20 23496 - 24359 869 287 aa, chain - ## HITS:1 COG:RSc1596 KEGG:ns NR:ns ## COG: RSc1596 COG0190 # Protein_GI_number: 17546315 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Ralstonia solanacearum # 1 275 1 275 289 326 60.0 3e-89 MSAKIIDGKALAQSVRTGLKEKVEQFKLSSRAPGLTVILVGDNPASQVYVRNKIKACSDV GITSKLEKLPAETSEAELLALLEKLNADDSVDGILVQLPLPRHINEQKVIETIRADKDVD GFHVANVGSVVTGIGGFRSCTPYGVIKMLESVDYPLTGAHALVIGRSNIVGKPMAIMLLE KNATVTVAHSKTKNLKELALQADVIVAAVGKEKVVTADMVKPGAAVIDVGMNRNAEGKLC GDVDTEEVAKVAGYISPVPGGVGPMTIAMLLSNTVEAYERRLQKISQ >gi|301349793|gb|ADCQ01000057.1| GENE 21 24521 - 25198 718 225 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 20 212 15 208 210 218 61.0 8e-57 MIQMTSKPYTQESPDTAGVVYIVEDDEAVRDSLKWLLEASSYRVELFESGEMFLAKFDPN AIAVLVLDVRMPGMSGLEVQEHLIARKCDIPIIFISGHGDVSMAVSTLKKGAVDFIEKPF DQAALRSLIERMLQEARQRKAKAEQRSLNDALLSKLTPREQHVLERIVSGRLNKQIAADL GISIKTVEAHRASIMDKTNSGTVADLMRVVMNANRPPVKDSGSMR >gi|301349793|gb|ADCQ01000057.1| GENE 22 25364 - 27775 2056 803 aa, chain - ## HITS:1 COG:mll6607_2 KEGG:ns NR:ns ## COG: mll6607_2 COG0642 # Protein_GI_number: 13475514 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Mesorhizobium loti # 565 802 5 240 240 149 35.0 1e-35 MTYKKHISQSNDLLDRFSSAFAGIKSHSNLPSGTTPFIWAIAVLIVVIFSAFYFNVRANN ETILRTNLMKSTAKVADNIEMRMRGISANMARMIEKMELDGINSAVVNKYGREIISSSPE VILLRVIEPSGKGLESVVNPRLGRSDLRQYNYLDYPQVVRDAIGDAFLSNRVSYSSFWFT PGDISSPSVVIIYPFAIGEKTYALLARLSLNKLLEVSTPQSLLSDYEFSFLHGTKEIAGR AAYNPPDDYTIPSYVRAADPLPPSIQLYGCNVLESPMIFASPLIYWLGALMLFLLLSLFF LNREMRRNQSDLERALKELELRRSIEDSMNLALVITDLDNKIVYTNGQTEEITGYSEEEL LGKTPPYPFWGDSSELPSQLLKDRPHEEPGKPYRFDLTIRCRNDETLEALMLAMPFYSAY NEHIGWIYMIQDNTVEAQSMNLTNDSIASYERLLNSVLSCISAVMQKPTGSMLGIHNNHY TEQLGNTADGHLEISKAFKEPFDPQGNRQGEVWVDSLGRWFSVAEARVTLPGGSHVTLQS ALDITKRKINEQEFEEQTSKMENSSRLITLGEMASTITHEINQPLTAITAYANTALEVID RAPEVNKTQVLEIYRKIANQAARIDKIIKNIRAFAKRRPTTLECVSLNSVFSDTMELGRL IEKKYAGVHVVYELPAVVPDVICDPVQIMQILMNLIRNAAEAILEHGSKDKTITVSAKVG AKDVELSVGDHGPGISDTMKASLFTPFFSTKKNGLGLGLSTCQTIAESHNSRLRVRDNEG GGTVFFFDLKICFTKDSENKKQN >gi|301349793|gb|ADCQ01000057.1| GENE 23 28981 - 29088 61 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFPIILKGYGSKPSFLKTLTIVTGTYTLDKEAKG >gi|301349793|gb|ADCQ01000057.1| GENE 24 29268 - 29498 149 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859123|gb|EFL82206.1| ## NR: gi|302859123|gb|EFL82206.1| hypothetical protein HMPREF0189_01926 [Burkholderiales bacterium 1_1_47] # 1 67 1 67 76 110 100.0 4e-23 MASKYLIYKNRKNEFKKLLDRAVKLDIVSAFVSRNDIFNDTIERAKDGKLTVRLLAGISN AISDPDVLLKKLLTLK >gi|301349793|gb|ADCQ01000057.1| GENE 25 29549 - 29683 81 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTANWLKERLPEWAPLLSRKISSRVVESKLEAVIDFSYNQLSSL >gi|301349793|gb|ADCQ01000057.1| GENE 26 30497 - 32284 905 595 aa, chain - ## HITS:1 COG:PM1791 KEGG:ns NR:ns ## COG: PM1791 COG1292 # Protein_GI_number: 15603656 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Pasteurella multocida # 1 592 71 663 668 569 48.0 1e-162 MIAFSKAGNLRLGPDNSRPQYGYISWFAMLFSAGMGIGIMYFGVAEPLSHFASPAIEGTV QKDKMAQLYTFFHWGLHAWAVYALIGLSLAYFSYRYKLPLSIRSSLYPILKSKVNGPVGY LIDIFALCSTFFGLTTSLGFGAVQIASGLTYLHLIPENSFFYQSIIIFFIIVGAIVSAVS GLGKGLKIASEANILLALALMLLVLFFGPSVYLLNAFSEGLGTYLNNFFALAFNTFAFEE GSKPWFQNWTVLYWAWWISWSPFVGLFIAKISRGRTIREFILSVLLMPSLFIFLWMTVFG SGAIWMDQHVLHGSLSKLVNQPDTLLFHFLSHYPASSLLLCIAVLVIGLFFLTSADSGLL VMDGISSRNSPRSPKWQSVYWGIMLIILPLALLKSGGLKALQTMTLISALPYSVVMLIVC YCLVRTLRQDLASYSATSPSVSRNFDPSHWKSRLEQILTFNQKEDIGKFMKDTVRPAFEM LLEELNEKGIKAELISKEKPRLSIELLIHHDKVRNFRYGVVAEEKKVSDHLVEDDKMPTV TSSISYSPVTYYNDGRRGNDIQYLSKMEIIADFLHEYERYILLLAEGKNEMLIES >gi|301349793|gb|ADCQ01000057.1| GENE 27 32859 - 32984 84 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSLALECQDFPLTLISNQHHKCAEVPFTKSSYYCEICKYYV >gi|301349793|gb|ADCQ01000057.1| GENE 28 33395 - 34285 349 296 aa, chain - ## HITS:1 COG:XFa0047_1 KEGG:ns NR:ns ## COG: XFa0047_1 COG3843 # Protein_GI_number: 10956757 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Xylella fastidiosa 9a5c # 48 259 35 240 279 75 28.0 9e-14 MASNKNPFLDDLFPDPMRARKARIFKGYENVSNTAAFRFSALSSKVKAEGVVDKRAEVMF RFGQANIKSYLHTIKAADYIARNGDIELIDQSGNSLQGKAEYRKVLYEWKLLSEMGEGTS KRGHARRVILSMPAGTDEDKFKAACSQWAKDMLDGYDYLLAFHLPGNDRKTTQPHCHILL RTKNREGKRIHLANDELSAMREHFAACLLKCGIEANATRRWSRGQTQQGISQAEHHVLNN RRMSEQDRARVYAIAKKRELLKRQQAQVEKIHSAFKEGKAIPDSPSIQKTKKHEGP >gi|301349793|gb|ADCQ01000057.1| GENE 29 34272 - 36140 798 622 aa, chain - ## HITS:1 COG:XF2059 KEGG:ns NR:ns ## COG: XF2059 COG0550 # Protein_GI_number: 15838651 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Xylella fastidiosa 9a5c # 1 614 1 615 685 594 50.0 1e-169 MQLWIAEKPSVAKAICAELGIVKKGAGFNECKGGNTVTWCFGHLLEQAGPEAYTPDDVPV TKKGGKIWRMQDLPIFPSVWKLNVKPDRGVKTQLRTIKTLLTKADSIVNCGDPDREGQLL VDEILEFYKCRKPVSRFWVSAQDPASIKKGLKSLKPNSQFQGMKLAALGRSRADWLLGMN LTRALTLTHGAKERKLIAVGRVQTPTLALVAERDRTIKNFKAVPYFVIKAEVSGGRGSFT ALWKPSDQQEGLDSEGRLVNSAVAKSLSDKLKPTKTAVVRTTETVAKKLAQPRAFSLADI QLEASNKYGFSAQETLDTCQSLYEIHKAASYPRSDCQYLPESQFNDAPKVLAAIAKTCPK LRELVLKADPTIKSQTWNDKKITAHHGIIPTQLPVDWAALNDKEQKIYELIGLRYLAQFF PVHQFNSCSIDLDLGSELFVGKGKTVTSLGWKIVYEHQTDPDSDKTESDQILPSAKSGDI LKVLKTETKNELTKPPAYFTEGTLIAAMEKIHTVVDNPEYKKYLKEGDGIGTPATRAAII SELKRKGYLETKGKKICASSDGIELLKLVPELVRNPILTAVFERKLRDVESGKSTLSSFI ESQQKFILQEINKAKAINNGLQ >gi|301349793|gb|ADCQ01000057.1| GENE 30 36146 - 37228 685 360 aa, chain - ## HITS:1 COG:XF2061_1 KEGG:ns NR:ns ## COG: XF2061_1 COG4227 # Protein_GI_number: 15838653 # Func_class: L Replication, recombination and repair # Function: Antirestriction protein # Organism: Xylella fastidiosa 9a5c # 3 284 214 509 522 223 42.0 4e-58 MNEKYNAYVRSVADYFIEEMKKGTAPWQQDWDNAANVVPVSAVTDAPYRGTNALLLMAVR MSQGYGDNRWLTFRQVQELGGKVKKGEHGTKCIFWKHLVEKDEKDEDKTVERLIPCPFVV FNSEQCENLKLKKFETPEHEWTPLEAAERILDKSGAKIEEIEQNQSYYVPALDKIVLPLR TQFKDAEGFYATALHELGHWTGHSSRLNRPILNKFGTPDYAREELRAEISSMMVCSGLGI KRKAQNSAAYVNNWIEVLKKDPKELFRACADAEKIKDYLFGIDKSLGLTAEPPAKKDKSP DNKEAKAALQTSALQTYKELPNYQQKYIQSSMLNFLTQPLSNPYQFQKPSQKSRVIDIER >gi|301349793|gb|ADCQ01000057.1| GENE 31 37225 - 37455 90 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859129|gb|EFL82212.1| ## NR: gi|302859129|gb|EFL82212.1| hypothetical protein HMPREF0189_01932 [Burkholderiales bacterium 1_1_47] # 1 76 1 76 76 122 100.0 7e-27 MKTTNRETIKLTVNILIRKFCEDKAAKNFSMSKKEAEDYGACEETSLREEDRDKLFEDFA LDCFTRPSFSNNGERL >gi|301349793|gb|ADCQ01000057.1| GENE 32 37510 - 37938 343 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859130|gb|EFL82213.1| ## NR: gi|302859130|gb|EFL82213.1| putative type II restriction modification enzyme methyltransferase [Burkholderiales bacterium 1_1_47] # 1 142 1 142 142 256 100.0 4e-67 MTEYKAFSNTVVVFKEPTISQIVPKSGPNAGKETSVLEFKAYKPHFVKQKDGSFQQDKDG TEFFSVRYYGKESSAKRMAAGIKEGMMLEVRGDVSTREFTGKNGKQMQENVLTAKGLAVS LNQPGLTIDYCRPKAKEPEAER >gi|301349793|gb|ADCQ01000057.1| GENE 33 37972 - 40530 1594 852 aa, chain - ## HITS:1 COG:XFa0016 KEGG:ns NR:ns ## COG: XFa0016 COG3505 # Protein_GI_number: 10956727 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Xylella fastidiosa 9a5c # 11 555 1 542 656 407 39.0 1e-113 MKASKTLLKILFVVFAALICTLVILFISSFVFMRIFNLPLEACRPWTIIQYFMMYRHAPD KAVRLAVHACLFLPWIALVGVGIAIVINRDKRALHGAARFANLGEVKQSGLIDPPGGLDK TILVGKYKNNYLTYAGYQFVLLAAPTRSGKGVGIVVPNCLNYSDSLVVLDIKGENFNITS GFRKACGQEVYLFSPYADDEKTHRYNPLDYISSSPAERLGDIDAIGQALYSGENNNDKFW SENAKDFFRGVTLFVLETPGLPHTLGEILRQASGKGKPVKEHLLGKLKEAQDAGHPYSNN CVDALNRVLSNSDNTLAGIIATFNTALLSFQNPKVDLATSASDFDLREVRRKRMSIYFKI EPTKLKDARVLINLFFDQLLNLNTRKLPSQDKTLKYQCLVLLDEMTSIGTVNMIKQAVSY MAGYNMRLLTIIQNKSQLEDVYGKAGAVTLLSNHALMIMYAPSPATQSDANEYSEMLGYE TVKSKSKSHSKGGNSTSESDQKRALMLPQEIRELGKNNEIVTLENTKPIFCQKIKYYLDP AFRERANWAVPDIPQQDVELFVAQMEQRIKTASASDLNETDAASRIVTGNTELPDDMKSV PDNQWSEDQVNCYIENLISNEIVKKSISNFDALEGISAASVSAQTDVLRQMNDAAAAPGT ENARQILSDLAEEEADISPNPESNTEDKTSQNSEESDSALLASLEEFSDESDSENKVESI AIHADIEETHLSEITEPDTEPEETSAAAQNVTDITANITADVTADWDEKRCADFAASLIS QIKLKLKEQKIPETTAQESIEAEQKDETSGSETPTSTDEGDKQKEYFRHVQRIRNAYRKV AKNPLASRRKIS >gi|301349793|gb|ADCQ01000057.1| GENE 34 40517 - 41593 632 358 aa, chain - ## HITS:1 COG:BMEII0035 KEGG:ns NR:ns ## COG: BMEII0035 COG0630 # Protein_GI_number: 17988379 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis # Organism: Brucella melitensis # 3 351 13 349 361 320 51.0 3e-87 MSSPVEKDLTVRVQLQKGLQKYLDRSDITEIAVNRPGFVWVEESSGWRQYEDKNFTYDYL AKLGNVCAVYGGENKTLDSAHPVLSVELPDGERAQFVMPPACKNGTISLTVRKISKDVIG LDSYIKNGYFSHIRPKDSLDPIHEELSALYKGTFDTNKTPDTLNLLRAEFLKRCVETGKT IVIAGETGSGKTTFMKALMQHIPTDQRIITIEDVPELLYGLPKHENQVNLFYPSEATDKS TVTAASLMRSCLRMKPDRILLAELRGGETFDFLNVCLSGHSGSITSCHAGSCGQVFDYLA LKVLQSSTGRELPYPVIQQLLHQVIDVIVHVHRNRTYGRHITELFYNSHTEEKKNESL >gi|301349793|gb|ADCQ01000057.1| GENE 35 41590 - 42450 87 286 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859133|gb|EFL82216.1| ## NR: gi|302859133|gb|EFL82216.1| hypothetical protein HMPREF0189_01936 [Burkholderiales bacterium 1_1_47] # 1 286 68 353 353 560 100.0 1e-158 MTSQLEKGCINKETGFLLQASRSDAKKSLFHKALNSPVVLAVMDKAKEIAIKSKHIESHA DIQHGNTHVQAIHIFAVPILLNQIYYRLELTVRDYWESKNSRKMIHSIDGIQLEKIKTFV WEHPAQGITRTKSSACCQTGQPTNERKDILPNLSSSILFKDLISGYVRADGKGYFDKINP DEFRLDGAYKSEVRDSVLVRYFYEEFNKTFSSQLKKAGFSLNQANSEVLIKKIYENYQQI TQSGEQLTNNKGSFERLLRLKCKCFSPLTFCSFSKTRTNNEMEKSL >gi|301349793|gb|ADCQ01000057.1| GENE 36 42590 - 42760 79 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVDKRKDEDESSSAKLGFEVIMLNQANVLAGHLQTHLHIVAKTAIWELSSVDSGMI >gi|301349793|gb|ADCQ01000057.1| GENE 37 43402 - 44385 56 327 aa, chain - ## HITS:1 COG:mlr1930 KEGG:ns NR:ns ## COG: mlr1930 COG0583 # Protein_GI_number: 13471829 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 36 294 27 284 297 77 27.0 5e-14 MNPFNDIETWETLLGLSEGRQLNQIAHESKISLAALIRRIRTIENTWGVKLLSTNKPIRL TSAAVNFLPEIRALCESHRKLQHRFETAKDYHSSLSGQIRFAVAAGSLGSQNTHRLLMEF STQHKGIEFQTEIGPNLNKVLNGTCDVSTFTGNLELSGLEAIPRGRAKYFALASPSYIKN FGYPRHPSELSKHFCAVFCGASRARTEYLQKAKEKRIVTYGKTVTSTDVLFLKHIVLQGE ALIVDLPIGHCAKEIKLGHLVPILDGWHRNSEPLWIVTSENKWKDPKIRIFMKWYATAWS EMLQKAEDSLRNCLSDVFIEEILDSTP >gi|301349793|gb|ADCQ01000057.1| GENE 38 44522 - 46042 665 506 aa, chain + ## HITS:1 COG:MJ0791 KEGG:ns NR:ns ## COG: MJ0791 COG0165 # Protein_GI_number: 15668974 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Methanococcus jannaschii # 36 459 40 451 484 156 28.0 9e-38 MKLRKSFAIVFCALFSLAANAAERDEFFWLGEMNKATAVINSEEGLLDKAVTPKIARGIE EVITNGSKPGAKRPKKVIAFEPLLIKAAGMDVTMLHIGRSSQDMHATYRAAILRDEALEL MVSLSNTMQSLLDLAEKNKNTIVPNYTNGVAAQPNSYAHYLLGLLSAFRRDAERIENFYD RLNYCAMGTTVLNGTSWPLNRERMAHYLGFKAPVENAYDAGQFKSNDDAVEFSSILTSIA LHVGTFIQDLSVQYAQPRPWILLQEGGENTYVSSAMPQKRNPGLMIRTRTNASRVISDAQ QAVWLAHNIIPGMSDARNVEDTSGRVKETLAMLSQVRRVIAALKINPERALEELNSDWTA SQEVADVFMRDYKLPFRVGHHIASEIVSYAKANGIKPADFPYSEVKRIYAEVIKKEYPQG NPLCPMPESQFKDTLNPVKIIQNRKTTGGPQPAELNKNLASMEKSIQSQLNWAKGNVATI SNALQKLDGDFQKILPKEEAKKTDSH >gi|301349793|gb|ADCQ01000057.1| GENE 39 46159 - 47130 10 323 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859136|gb|EFL82219.1| ## NR: gi|302859136|gb|EFL82219.1| hypothetical protein HMPREF0189_01939 [Burkholderiales bacterium 1_1_47] # 1 323 94 416 416 609 99.0 1e-173 MFRKDLNSPIVKAIFKNAKEIASSSLHIESHCDLLHENEKVQAIHIFAVPAIIEGDLFRV ELTVRDYVERDHERKMVHSIDGISIQRYEKAFVWEPPAQEVASKGTLQKTGQPTNERYGS IVNENIKSIPLYRLLSGYIRADGKKYFDNVSLEEFGLDGVYQSSVRQLYVNQFLFRKFAN NFKEVLEKNKFPLSTRNRQLLFLNFEIAADDFWLNSQGLTTNLQSLEKIISNQAVYQKLS PNVVAIFEATRRQIVQNSLPFQLSEHGKKILKLHVEALSTKYPSIKDASEEVVRLYKKFS ELEKSGKPLPEVPKAKKTKEPER >gi|301349793|gb|ADCQ01000057.1| GENE 40 47459 - 50473 1753 1004 aa, chain - ## HITS:1 COG:no KEGG:ECSP_3222 NR:ns ## KEGG: ECSP_3222 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 50 849 900 1578 2791 172 26.0 7e-41 MARLLPEQLEFDFFAPPAPEQVKKPEKIAVSAAFKDADILKFQLNKDGSRKLEDFGEDLN NTRKGRSRTHSDIDRFLELPESDLQKRLGSKPLEKVWPKAAIQALAKDNPEAGACLWLVR QQLGDVRPRQNSIKYRKYIATALAAIDLHRQAAIGELAPEVQTAAFDSFYAVRDNYKYLS AIDPKYWPMLGHHYFKDVADICKYNDYRLSNDRQLNEYAYLTTLPYSQHPEIYDLYLVNS RGSRVPYNLVGGKTWEEFKENINRQLEKEHLTRKKEEENPQKTAASRTTESKPIELFGRA NRKSEYEVYGKQGSIEFQLTDKAHFESKDDFWKYVSGHKQELENRYRELKEEFSRSEKDW RSGNPIRDRVGPDYRQGKDATPEMFQDTFGFRGVEFGNWVKQGKNGRERQWMLNNAYDSL MDLSKILDIPPKAVALDGDLGLAFGSRGHGAASAHYEVANRVINLTKTKGYSSLAHEWFH ALDHYLMRTNYKEIQDPERRYLSQQVDSSITVQLTEDAKRDIFKRAESVYRSAKWIPAQV EYLIKNDSKNFDAAIKCAQGDTDSFSIEVNYQERSNSANKKMMFEFTRKDINVKEVGQNN VIRFPLHDAWAETINAIRDSDMHKRMTRKSDYWHSKAEEAARSFEGFVELRCKEIGITND FLTNGAYTEKALGKEGFYPYLDGKDVEKVTNGFKRIFKVIKTKETDKGVALFSKANQESP KTPKAEIREALIKAFGKEGLVNLVNNNRFYLAQTEYEALTVASIEQEKKQGFSTIALPQD PTRILGFHDKVNHRTFLIADNLNPETACAVMLHEVGVHMSADSTLRAKTRKLIDTAVNLY ETGLKTQDTLMKTVEKRLQESRISRSSFDYREEVFGYLVEEAAKAQARAPAVVRWFNDVK STVNVWLLEHGVRDTSKLSALDFATIAKSNVKEISKMPQEYELSPKGREILAKHVQALSS KYSKLSDAEAEIKGLYKRFAELEQAGKPLPEVPKTTAKEKEAER >gi|301349793|gb|ADCQ01000057.1| GENE 41 50475 - 51002 380 175 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859138|gb|EFL82221.1| ## NR: gi|302859138|gb|EFL82221.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 175 1 175 175 329 100.0 4e-89 MAISFKEQIDNFSNDFYINTAYIPYIVNGPECADGLSADELKKIDDFLDKWSYVDCSEAM LDSPDFGECRICGMQAAVTKATFINKEAVREEEQRRETDEKLSELSSENAETFKQVYESH VSRPEFQQHPRMKEIFRAKLADVFVDAERRGIVLKPEEKNIDSNISMPIKAGMER >gi|301349793|gb|ADCQ01000057.1| GENE 42 51018 - 52256 781 412 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859139|gb|EFL82222.1| ## NR: gi|302859139|gb|EFL82222.1| hypothetical protein HMPREF0189_01942 [Burkholderiales bacterium 1_1_47] # 1 412 1 412 412 737 100.0 0 MNYEEKIEYAEPVVIEKRLMQQLIDLNTDIRPLNAEAAEIFLAEYEVLRFENPLETQICK PFGGEKETECITALAVKKETIKKIDALEHDLDEARQNQWRTEYLQDCKSGKEVKPLFGVD IEYDNIPWTNPLDEEEMDYLTQITPTSFVLDPKEDSGRIDLLDSALITKFGAFLNRKNGE IEDDKYYCAPEFRRNEVCYYGSLRFHLHEAGDSVKSFGNWNEQTKSWSGVFDLSQLNVDD KEDIKDALEELPEKLSQEKVFQGAKEDELFWRESMTAPIEQTLRLLEEPKKEIKLQIKEK DLSMADVLERSIREKAEERWKAIETERNQSKAVLTPENRKVFDVLFEAYVTTEELQKHPR LQKALEKQLLSVFVAAQKKGITVGLNEYSMDAPSRNQTIIQAKQPARDREKQ >gi|301349793|gb|ADCQ01000057.1| GENE 43 52306 - 52620 153 104 aa, chain + ## HITS:1 COG:VCA0468 KEGG:ns NR:ns ## COG: VCA0468 COG2026 # Protein_GI_number: 15601229 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Vibrio cholerae # 7 90 7 90 110 79 48.0 1e-15 MLLTVCETSTFSQRAKEIWSDSEREQFIVWIAANPLIGDVIPNTGGLRKVRWQSQGRGKR GGARVIYYNVLEDGEIYLLMIYTKNKFDDLPLKLYKILKETIHG >gi|301349793|gb|ADCQ01000057.1| GENE 44 52613 - 52921 188 102 aa, chain + ## HITS:1 COG:RC1223 KEGG:ns NR:ns ## COG: RC1223 COG2944 # Protein_GI_number: 15893146 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Rickettsia conorii # 41 96 81 136 142 62 55.0 3e-10 MDKNFPGTFSSDAEVNDFCNDLITSVRQMKEKKVCRTTVVIPIIETRNKTGLTQEKFAKM LGVSVKTLSAWEQGVRTPSGAARTLLKIADKYPEIVSEAASL >gi|301349793|gb|ADCQ01000057.1| GENE 45 53646 - 53924 110 92 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDPLCQIANSFLRLTRFSYRFVLGKKGCKVNIDLRFDCGHFHHLAGFQYLRDIDFIRTAE KEAVFLAVLEERITMALLEKSPNFQKILPDRS >gi|301349793|gb|ADCQ01000057.1| GENE 46 53941 - 54165 64 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859142|gb|EFL82225.1| ## NR: gi|302859142|gb|EFL82225.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 6 74 1 69 69 115 98.0 1e-24 MDSDQLIFRYLEEKSFSKIKADYLLENHLNDSVSYLFIAKNNNCFVGISLFEKRMIRVSD KILENLRLNCEVFI >gi|301349793|gb|ADCQ01000057.1| GENE 47 54528 - 57776 1379 1082 aa, chain + ## HITS:1 COG:ycgV_2 KEGG:ns NR:ns ## COG: ycgV_2 COG3468 # Protein_GI_number: 16129165 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 794 1015 126 352 413 74 28.0 1e-12 MALFRSSLEQNIFSTVPQLHISAKGGKVFKSAGKQTIALTGQTIISSETGNIFHTDGVGS SQIVTGNFKELIANVGANKPSRPGFLLFGYGVSGSDGGVIYNSHGEQILGKSSTEPEGVI EKISINCSLTGTQSSTGRGVAIRNFEAEARQMIYMPIEQIGDEEQPFTVGVEDVYGKQQY IHRIGTIYATNFGIAGGTIAMTSDRGEQKINSVDRILVSDRVSNIAGGAWTPEGDYVSTI LPVVGIYNWSDSGAARGDERDIGTQYVGLTEGIRVQASKVNESYGIYNRGGVQTIESKPT GTDLREYVDIHVENSKAGSRAFSVFVNPLMDGDAFEKAETSTWLKGNFRILKGDVVVANT IESQNIYPSNSTLYLIADDSHRNQLVLSDNVNLIVRKGARDDELSKLTTQLVLGDDRQET TATYNVALGKYSSINDQGVFRGRGLISAYFDKDSFEAARANDTEDVSGDGNLRWNFVGKG YGIISGGVLMKNVEKTLANNNSHLDVQIPISADEVPDEHFAYQIMRSAVNNLFVNEGIDN IRERVDLEKWEDEKGVYEKYKYIAGKVYINEGKINGGYEEEYYYEDPEIVGNQNNIRDPL DLATLKLVPTDGRLVDENGNFTSYTASDRKVTLALESNPRTSYNAVYLESKPKDPDSSGG STEKPSDPPLDTNIAADGSGDLDNSNPDDSTDEAPAAGTSLTLLVQDGKLGYINKAGDFK EITVNEEGQFVDENGFPLDVTVTTDNAKAIYAWEGEIGEKIFEETVQEKEPPKDPPKEPS STVDAIDSVALSDYYLWRLENETLYQRMGEVRDRADLEGGWFRVLAGKNTLDKGNHYFKH KYYGIQLGFDHVFNKEDGGSWILGGGLTYTHGKTDLRNSGSGKNWLGSVSLYGVKKFNND AYLDLIFKASRIHHDYTAISNKMRYLSKGKYHTYAYQIGVEFGKKFMVNDEWYIDPQLQL NYGHIKGTKCRTSSDINVRTSGLNSLIGRAGISIGREFKEGSAFVKVDALREFSAKYKGT YALDSGTKNKTEISLKDTWGEITVGGSYNFRKDVFGFAQVKRSFASDVKQEYRADIGLRY VF >gi|301349793|gb|ADCQ01000057.1| GENE 48 58045 - 58317 130 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859144|gb|EFL82227.1| ## NR: gi|302859144|gb|EFL82227.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 90 73 162 162 166 100.0 5e-40 MVLYPQERSVLYLSSGSHELRASFEPLPEKPQSEEEKKHFKYCKKNKPETLGFVKTIEGK PGEQILAKVRSNQGYLYRIKTVRKDNQEKL >gi|301349793|gb|ADCQ01000057.1| GENE 49 58522 - 59733 853 403 aa, chain - ## HITS:1 COG:BMEII0034 KEGG:ns NR:ns ## COG: BMEII0034 COG2948 # Protein_GI_number: 17988378 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB10 components # Organism: Brucella melitensis # 186 400 49 264 265 204 46.0 2e-52 MNENTTPQISGSHPNPTEIGIPSVAGKKSSPAKNRNLALMAALVVLMLICIAFGFYQKHS SRNVQPKQQEQATPMLSGRTLTLPPLSQIQPPEAPPAPVVIKEPAEPKPEKEAGLIQEPP AIQTQQAANSPMVNSAKEKPEPTLAEKRNMAPMMAEGGALKGVEESEGKGFAATLRDEGY DSGSGRSSGGKLGGLLSSVSTPPTSAIMMPDRNLLLPKGTFIDCVLETKLDTTVPGMTSC VIPRDVYSANGRVLLIERGSKAIGEYKGAVENGLNRIFVLWTQIQTPKGVRVNIDSPATD ALGGSGMAGEIDFHWWARFGNALLFTLIQDGFDFAMTKQTENNGGVNYYQNSEDGMNQII QEAMRQSGNIPPTLTKNQGERVGIFVARDVDFSKVYQLKPTSR >gi|301349793|gb|ADCQ01000057.1| GENE 50 59734 - 60582 662 282 aa, chain - ## HITS:1 COG:BMEII0033 KEGG:ns NR:ns ## COG: BMEII0033 COG3504 # Protein_GI_number: 17988377 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB9 components # Organism: Brucella melitensis # 49 275 3 237 247 145 36.0 1e-34 MRKCLCCLLLTASFLCCGLSVNALERPTASQYDARVMYTDYKPGQVYPIRAANGLITTIT FSPGEKIRDFGSGYSTAWEFQARGNNFFLKPKDFDGATNLVIVTDKHTYLFDVHPGSRAK ATYSLTFRYPLEEAAKAQENANKKTVDSLLNQSDKEISDKTDSENGSEVNKFYSENFGSS PLSKEIAPLEVFDNGRFTYLKFDRHTDFPAVYRVSENEEETLLNSHIRGDWLVVHGVYRE LRLRAGQAVVGIYNETYSGGGAPNDSGVSVPGLKRELVKEVN >gi|301349793|gb|ADCQ01000057.1| GENE 51 60579 - 61328 691 249 aa, chain - ## HITS:1 COG:BMEII0032 KEGG:ns NR:ns ## COG: BMEII0032 COG3736 # Protein_GI_number: 17988376 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, component VirB8 # Organism: Brucella melitensis # 1 242 1 233 239 144 34.0 2e-34 MFFKKKKPTPQAETAPSAAKETVNKPAYPYHEALDWTVERMALKEKQAKAGWTVAKIMGC LLVLVSIICIVIAVKKEAYPFIVELDKSNGTTRVIDIRDPQNIPVDEMMDKYWLNLYTQS HESYDYRTLENDHARVRLMSVPEVFNPYDHQYGLDNKKSLQNLLKDKKKIICNVESVVPN GNGIATIRFTKRLVDTYSNNEEARNSWRATIGYEYNPNYSMDEAQRLVNPFGFTVTSYRV DPIIEGAAP >gi|301349793|gb|ADCQ01000057.1| GENE 52 61386 - 61661 331 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859148|gb|EFL82231.1| ## NR: gi|302859148|gb|EFL82231.1| toxin-antitoxin system, antitoxin component, AbrB famil [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 157 100.0 1e-37 MASLTLRRVGGSVVATFPKALLELLNATEGDTVEYTFDDGKLIIESKQKKRRKLPKYDLN QLLEEHKQIMPLLKEEYEIWGKDKRKGTELL >gi|301349793|gb|ADCQ01000057.1| GENE 53 61658 - 62011 266 117 aa, chain + ## HITS:1 COG:NMB0913 KEGG:ns NR:ns ## COG: NMB0913 COG2337 # Protein_GI_number: 15676808 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Neisseria meningitidis MC58 # 7 113 6 113 115 87 40.0 7e-18 MKKVLQQGDIIRIAFDPSLGQEQQGVRPALVVSVQPVNALSNRVIVAAISNGAGFNRKYG LVVPLIGTGLQTTGVIICDQLRTMDVRAREATFIETAPQYVVDEVLGKLAAILGIEE >gi|301349793|gb|ADCQ01000057.1| GENE 54 62017 - 62259 228 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859150|gb|EFL82233.1| ## NR: gi|302859150|gb|EFL82233.1| hypothetical membrane protein with putative acetylase function [Burkholderiales bacterium 1_1_47] # 1 80 1 80 80 145 100.0 7e-34 MTDKKLFSARVLCISVLFVLGLTGCGTTKPPTPSGIRVPVTEFAQQRQKEAMQKKEEAKL NFRKDRVTRNFSFGYEETEQ >gi|301349793|gb|ADCQ01000057.1| GENE 55 62314 - 62625 321 103 aa, chain + ## HITS:1 COG:no KEGG:ebD107 NR:ns ## KEGG: ebD107 # Name: not_defined # Def: putative phage-like regulator protein # Organism: Azoarcus_EbN1 # Pathway: not_defined # 18 103 17 103 103 68 47.0 5e-11 MNLAMNLRKSKKDFDDVLTEQLKNPEFKKCFDKAGAEYATFKNAMEARKEAGLTQEDIAE RTGTTQSSVARLEMKLSKGILPSHTSLVKYASALGKRVVITFV >gi|301349793|gb|ADCQ01000057.1| GENE 56 62644 - 64314 1102 556 aa, chain - ## HITS:1 COG:BMEII0030 KEGG:ns NR:ns ## COG: BMEII0030 COG3704 # Protein_GI_number: 17988374 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB6 components # Organism: Brucella melitensis # 5 316 7 300 347 63 23.0 1e-09 MAGTFEAFGNQVRGTMAGFANSVSGEIISSISPIIYTGIMIYFFARAYQITTGRAEGAIP DLITQCVKIVLVAFFGLNAANFVTYVIPAVYGIENLLLNAISHATTASDINNAWGAADQT WQTFMNGFQAIYNIWSNSSWSVWSIGESIATSLFIILLMVLMLVVCIYFMFFAVGYLLLY EIFLVMGLAFGPLFICTLMFTVTRTWFDGWLRAVVCWAFTLVAVAGTLSLINGIFAERID QITEFAIAAEGGKDYGVLLVNLGVFAVVVLALATVVKSIPTFAAGLTGGVALQASSVAGM LQSFGRTMAAVTGGAMLGYAGGMYGRTNAQDTDYAKENRDALKSQAQHLLGSGGLTNPGS FAAATAGYAAGAVRQFFTDPDKLRTPTNAGSDGSSGPSGGSASGSSGAPAFSGPANMNQT PQQEKVAAANAAALGAAYGAQPASVAQPTSPSGMTGTTSSMPAQSASPTPASFGATSGTT ASAAPGDSGAADPAFDFSADHSQFDQRAQFNTPSPEPSIPQSSAQTSGSSEQVNEAQSRE NERIANEILKNRNTEG >gi|301349793|gb|ADCQ01000057.1| GENE 57 64327 - 65049 547 240 aa, chain - ## HITS:1 COG:no KEGG:Bpet3708 NR:ns ## KEGG: Bpet3708 # Name: virB5 # Def: type IV secretion system protein VirB5 # Organism: B.petrii # Pathway: Bacterial secretion system [PATH:bpt03070] # 24 216 23 214 234 87 35.0 3e-16 MKYKKIILAVMLSAGVCSGTSALASGIPTVDAAAIAQMVQQLTQMQQMYSNMVQQYNTAV NTLQNFTGTRGLGLVDYNLNLRSLIPTSARSRLNGIMNGTSSLSSLGRDIFNRLKLEDAC SNLDGEVKQNCLKAREFEAEQQAVLEEAANTANQRLQNIESLMSRINTATDAKSIADLSA RIQAEQVALQSSQLAAQFQQAQMDKQNELVRQQAEREAHQKMFPRMTQADIQRAIRPPKN >gi|301349793|gb|ADCQ01000057.1| GENE 58 65052 - 67514 1274 820 aa, chain - ## HITS:1 COG:BMEII0028 KEGG:ns NR:ns ## COG: BMEII0028 COG3451 # Protein_GI_number: 17988372 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Brucella melitensis # 1 807 1 815 831 611 41.0 1e-174 MFAQRKALENSEKSLSEFIPYSAVIAPGVVICREGDLVATVKISGKVFEAVSNEALQRDA ERQNNFLKVMASASSTDEMSLKVHRIRRVVHDELSVPDENSSSRFVRDFVRAYNREISEN NLMATELYVSLVSHKATALKRDNYKESEIREELKERLEVFGKVFDQLVSSLRDYEPAVLG EYSDEQGIIFSHQLSFYNYLLTGQWQKVRVPFMPLNEALGNVQVFGGADTLEFQTALGKS YVQSIELKDYPMATYSRLLDGLLYNTNFDQSSYPFIETQTFTALSKNKGLKALKLQQNQL RSAQDDAVSQMQLLSLARDMVANGQIVIGDYSYSLLVFGSEDTVVAHANDSVKKLQDAGF LPIKSTLALVTSYLHQLPGRKNRPRVAKISSMNFAHLASFHNFPSGKRDRNPWGEAVALM KMPSDQPYYFNFHYTDPEKDSLGDVPLGNTAILGASGAGKTVLLNFLLCSAQKYRDKDHQ LSVILFDKDKGAELAIKAMGGGYLAIENGKPSGINPFQLEPTAENIQFLIGWTKRLIGRD GLQITPLDEQRIATAVETVMSMPAKYRRLAVLPQSLQTGDRVEDAQNSLTMRLSKWIETG PLAWAFDNEINTLDLNEFPNFGIDGTDFLENEDVRGPITEILLYLIETQVMKDKRRTIIV MDEFWKYLSDPATAQFAFDKLKTIRKQNGIFVFASQSPEDVLKSERGSAFVDNTATKIYL PNPYANEKDYTEGFKCTKDEFSIIKSLDTQSRLMLIKQGPVSVMIRLDLGNFKRALKIFS GTAGTTQFGEKLFSLVGDDPEVWIPYFFGDKPLPQTSKED >gi|301349793|gb|ADCQ01000057.1| GENE 59 67518 - 67826 215 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859155|gb|EFL82238.1| ## NR: gi|302859155|gb|EFL82238.1| type IV secretion system protein virB3 [Burkholderiales bacterium 1_1_47] # 1 102 7 108 108 177 99.0 1e-43 MFKGATRPACIGGVPLQVFVLNIGVISLLAIWIWIPLILITPITHFYLKTVADKDEQIFS QLISYARINLVRSFNRRYWGNVTSLSPKQEKKELFILEKSKE >gi|301349793|gb|ADCQ01000057.1| GENE 60 67845 - 68123 365 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859156|gb|EFL82239.1| ## NR: gi|302859156|gb|EFL82239.1| conjugal transfer protein TrbC [Burkholderiales bacterium 1_1_47] # 1 92 1 92 92 147 100.0 2e-34 MKKNNFLFPAALAALILSDPALAAAGTQSLNNTLQTILSVFQGASLLIVTGAIIWAGYRM LYTHANIQTVGGPFLGACLIAAAPWLAELLVG >gi|301349793|gb|ADCQ01000057.1| GENE 61 68149 - 68895 402 248 aa, chain - ## HITS:1 COG:no KEGG:Mrad2831_6321 NR:ns ## KEGG: Mrad2831_6321 # Name: not_defined # Def: lytic transglycosylase catalytic # Organism: M.radiotolerans # Pathway: Bacterial secretion system [PATH:mrd03070] # 67 222 4 169 262 157 49.0 3e-37 MDIKNLARKSAVRTDFHGTFITFVTKLLLTHRNSSSLKLNFNQSGLCVRLITGLILATLS LSSQADDFGELAKRCAPEVSEDTLRALVRTESSFNPYAIGIVGGGSRQPKAFHEAMAIIA QLELEGKNYSVGLAQINKKNFSKLGINASGALDACTNLKAASKILSDCYQRAQNRSGSNS LHDALSCYYSGNFQTGYRHGYVDKVRANAGISTLTAPVVPSIREAETKSKDSSTLVATGD NSSTGLIF >gi|301349793|gb|ADCQ01000057.1| GENE 62 68803 - 69255 284 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859157|gb|EFL82240.1| ## NR: gi|302859157|gb|EFL82240.1| toxin-antitoxin system, antitoxin component, HicB family [Burkholderiales bacterium 1_1_47] # 1 150 1 150 150 276 100.0 2e-73 MSKEKLSYKGYEGSVEVGPDGRFTGKVLDIHCGLIYEGLTLLELQDAFQSVIDAYLDYCS SKSIRAEKPSSSPDVLSTKLCKPYDAVDFLESEEDCALYLHFCAEEDLGDGALRKAAALD IEKARGRKKANQKTYKEILKRDFGGLDEKS >gi|301349793|gb|ADCQ01000057.1| GENE 63 69341 - 69607 176 88 aa, chain + ## HITS:1 COG:RC1344 KEGG:ns NR:ns ## COG: RC1344 COG3077 # Protein_GI_number: 15893267 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Rickettsia conorii # 3 86 2 85 87 69 41.0 2e-12 MSTADSFIRVRLDKELKSEASEILSAMGLSISDLVRMTLIKLVNERDIPFSTYVPNKETI EAMNELEEGKGKKFSNFQELLSAVDKKC >gi|301349793|gb|ADCQ01000057.1| GENE 64 69649 - 69882 219 77 aa, chain + ## HITS:1 COG:ECs0252 KEGG:ns NR:ns ## COG: ECs0252 COG3041 # Protein_GI_number: 15829506 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 2 72 14 85 86 64 40.0 5e-11 MEAQGKRMELLSEAIDMLLKEVEIPVQFRDHSLSGNWKGYRELHIRPDWLLIYKVEYPLL KLARTGSHSELLSKVKR >gi|301349793|gb|ADCQ01000057.1| GENE 65 70021 - 79725 9557 3234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859161|gb|EFL82244.1| ## NR: gi|302859161|gb|EFL82244.1| putative autotransporter beta-domain [Burkholderiales bacterium 1_1_47] # 1 3234 1 3234 3234 5273 100.0 0 MNKIFKKIWNRKRGCFVAVSEAMTAASQNTGKAAVITVGLALALASTPSYAIYKHIYAGE STAGQNLDYAEQDYSLNLHGNYTVGAGSNVSWSVRGRAAFNIGPDNTVTTVNGNLLLHSW HSEDLGHFTWDRSNSILVNSTGSLYIGDYDEIGNLTRGGTDKSNNLTEFRLKDSSSITIN GRGFSNTTFVQEGNSVLSVNGSGMIFDGPFHINGNSRVDVHNNLQTRSNTYMTGGTINPY GNWINTGSFNLQGGNVNAGNGNLINNGTVTQTGGNFSSKLTGSGTYNYNGGSFNASKVSG DIVVNIASGLGASTSNFEGGNINNRGTLTVNGGWYKNLNNYGTANFNGNATIAKTTNYGT INTYGAVNFTDKLNTSGTLNTHDGVWSFGPSGVLAVSGGIVQTNNSFNVFDSLGTTAQQE LHYVGLNSVLPQEVKSSLNDFFTKYAPGSIAQKLINHASFTGGKVIVTGVNLTQTQAADL TKAFKEQFGSATTLEFQGTIAGVSHDDKLTVAKTNELYNNVEHLRDVIFVDRKLEGENGA IVVGDSGLRNNTGFTGINEATGTTIQDGKELTLIGGKSDGTSNRFTLAEKVITAVGNGAK LILGSLGIKDSSLYQGQASEVNLSNGGELRIAAGDYLVTNHTSSGGTTTVDKNSTFRSDN GTFTDKAVLENNGETVLGALNGWNSAEVRNNGKLTVSGNTQFGGRFINNANAKLVGTADI DGTLQNSQGARLIANTVNVNGTLRNFGYMEALDNSTVFGTLENPGEIRLFNTAIGSRGDG NIGTIGNTYTLKATGKTQVSGLIANASGAVAEFTGDDSELTVLSGGVVSNNGTLIADSLV INNGGYFINGDNAQKTFATSPLRLRKVARAVARATEQLKNLTVSEGGSKTNNGIAYYGTG SIAGEFVNAAGAEAYGGVSDIFVDGSGLGITNTGSIKNAGTFTFGGTLNNSGSITGDGLI VFKRAGLGNDTFTNAGQINVGSLEADNIKYVQTAGSLSSASGWFSNSTVDLTGGTIEHTV LGSGNTYNLGAGSGSNDAAIFTVGTLDSSSYVEIRRGATLRTEHIAMNGNKTTNLVGGRL STTLDQIFTALDYSTLNLDAANPEDKVEVSSNPQIVTGIGNVIGSVAQGIAFQWGTVAFD DASYSAALAGDAVNKLVAIGDVPADRHGELEVAFNGKAAERFNVDLANSIRATAAGTLAY ATFANETLSNESAANPSATSLVVGINDRAAVIVPTSGTPNVLAQNMGFMNVTGVTDGLYI NNGSHFVLVGQSQPNPNLAPVKLADGAVWVGGNKNIDGSVTPSKLTIGSYGSASETKGHL GELNIGISPANPALGGAGGQVIVKNGKFTVDVLNNGSAGYGNDKEGLVIGNADDTATQLI VGTYTAVDGSAMSNHGIFKAQNIASRNTNNSFVNYGTFEIGTADISGYVENNGQAAFNEL TLREYGSVNKQGAELTAGKLTVSGNALAGASGTYGIRGSLENQGKLSVTDELTVAGDMTN SGEVDIAKLTVQAATPVQDATSGSFINNALAKVDSMLTEAGSFVTNAADAVLTIAGLKGA SELNGTVTNDGTLKVDGTQSVTVASGELNNNGTMENTNALNVTGGTVGNNGSLALNGLNI TGGQVQNSAQADQFKDSGTTQIEMADASDVGIANEGHLELSNLMLLKGMIQGGSVGSKDV TLADVRQDASIEAEKVQLKELNNAGTVKVIEFAATKTENTGTVEAGHLVLAENDRFLNQA AGSVKADQLVLNGGEFVNAGGNTSDIALTQIATGGQFTSDGDSNLQKVVSNEGTINLNKG NLNIAELDAKNSVYNQLGGHFKADKGFFADSTLNIKGGIFDASEVRDSEGNVTGLLGNNT VNISGGNKTPVIDNEDSAENKSHYKDNLTQVIAGVVNSDTTVNIMAGGVLDVAKIELDGK ADSINLKGGVLQTSADQIFGSVTTEAIRIDATDAETGTVQLPTTVLSATTVGAVKDEIKS GLNVESGNLALDDDYFSASLIVSVTDKIANAFENAANLTINFLGEMTAPFTITTANDLEK EGLDVVLNPGIVLNTTTLHNEFADEYNKDTDASQTIKGLIIGAESNDPNTNSINISMGFK DVSHTDKVTIEGGKELVLVGNAVNAIPEGSFGDDANKLLKDSADGGSIDVNNGTFTFGSH GGVTPTVGWILSSNIGENGALEAKNGEFADWTIANNGNVHVHSNAILHTNSLTGNGSTVN EGKLSLDEKDGNAPVFDVVGSFLNKGPNSVLDASKVDQVSVYGTHVNEGKAEYHDMMIAP DGSSNNSGTEKGNILTVQGSHANSGTSIWNGVTVTDMGKGENSGQMDVGNVFNVIGEFIN KGAEAVLDATKTAVTTVAGLLRNEGTANYDDMTVASGGTSNNSGFEKGDNLTIADGGQHT NSGTSIWNNVSIQTGATSTVEVGGKETINGTYDIAGDRINKGEVDATGVANTQVSGTLDN QGTSNYDDMTVASGGTSNNSGYEKGDILTIEDGGEHVNSGTSIWNNQTVQVGGSATTEEG GKEIISDKYVIEGDKTNKGEIDATKVTDTLVSGTLDNQGKSEYDDMTIQGGGMSNNSGYE KGDILTIDPDGEHNNSGTSIWNNVVVAGGDVNNTGDIETGKLTIDDGLVKIDGGSLKAEE TDLNGGDLVIGNDREPTEENHVKAEINPKDDVIDTNIYVKNNGDLNLGPKGGLDWADSIG SPTVPGGTPSRLVITNNVTTGPGGGIAVGPEVWTDKVNHVQIGNGDLFFAKDSLTVIDSS ILTDGKSAFNTTSDIAKVTVEPGANLVLGNIEEVGDYTIVNGYITGGNESGGMWTGGWTG DNLYALPQDGSGINWILTLHNDPSKIWVNATLADVRTVYPDIAIPNIANDDLLHCKSGDA GADFVCRVLRDKELDIAGKTKVINSVANIAFAGGAMSVSMNDLNTAADSIEGRVSMRNEA FTEYGVMREWDRGNDLWVDVIGGKQKYKSLSATGISKAGFDTNAYGLVMGYDRKFAGKSV ILGGAFSYNHGSLDSTGDVLKTKNKYDSFGLHAYGAYAPVEKVNLIGTLSWMHNSSDITQ SINAAGFNKANADVKTNMFSLGARAEATLPVGKANVIPHAGLRYVCAKSGSYDTKVDGKK VWGNTPDATNTFQLPIGVAVRGDIMTASGWNVRPQADLTFIPQFGDTEQKTKLSNFNGVS DKLSGEFAGKFGTNVNLGVQADKGPATFGVRYGFTGGTKGKADHAFKFEARYRF >gi|301349793|gb|ADCQ01000057.1| GENE 66 79749 - 80030 366 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859162|gb|EFL82245.1| ## NR: gi|302859162|gb|EFL82245.1| hypothetical protein HMPREF0189_01965 [Burkholderiales bacterium 1_1_47] # 1 93 1 93 93 168 100.0 9e-41 MAEAIHVQRVTIHLKNGTNLVLDLKPEDHQTVDSQITALQDVLADPESQEKVFQFRGIRG DSWIRIKEIVAFDAVPLIFTPAEKEPAQTSQTK >gi|301349793|gb|ADCQ01000057.1| GENE 67 80364 - 80573 199 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859163|gb|EFL82246.1| ## NR: gi|302859163|gb|EFL82246.1| hypothetical protein HMPREF0189_01966 [Burkholderiales bacterium 1_1_47] # 1 69 1 69 69 118 100.0 1e-25 MRINNVEYPNVSIRVIESKRVVGLTGPKVVHRYEASVKRGAATQKRASENIAELQDWILL KVGGRMRSA >gi|301349793|gb|ADCQ01000057.1| GENE 68 80570 - 80917 229 115 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVEITASDIYWIGAMDKISLGLIFLACLSALLIICAIQIYSGAMALFGALLGIACTTAFI FIPSSQTMAAMKVLPAIVNNQRIQGISESTVKLTEQFLKENLETLKSKDKSGDKK >gi|301349793|gb|ADCQ01000057.1| GENE 69 80934 - 81659 430 241 aa, chain - ## HITS:1 COG:no KEGG:XCVc0027 NR:ns ## KEGG: XCVc0027 # Name: not_defined # Def: putative secreted protein # Organism: X.campestris_vesicatoria # Pathway: not_defined # 53 241 22 195 195 100 39.0 3e-20 MKTIISNPKTLLALAAVSALLSGAGFKVLADTTDYSQIPGMPKIELMTGNDRWGCEVLLC LANPNGPRAVSECRPPIDKLFDCLSWRHPCKFPSCPMAGDGNYAKQLSDGFDPCILQGME DAPQGWIVEGNINDNNQFKTDRRKNKLLRKNNASYNWAGEHWFKATEDSPGHWGGTKACV KGYQGTAYESYTCYDSSGDSSSSSVCYRPVRVYEQVKWQQYQSRRAIDVFINGKNWTRVH W >gi|301349793|gb|ADCQ01000057.1| GENE 70 81662 - 81940 116 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859165|gb|EFL82248.1| ## NR: gi|302859165|gb|EFL82248.1| conserved domain protein [Burkholderiales bacterium 1_1_47] # 1 92 1 92 92 174 100.0 2e-42 MSNLSLNQLRPEQVCERLGCGKTQLYALVKKDPTFPRPIQLSSRWTFWYECEIDAWSIKK AAEQQGITIEAMTERLASASAFSMKFKELMAN >gi|301349793|gb|ADCQ01000057.1| GENE 71 82227 - 82520 208 97 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859166|gb|EFL82249.1| ## NR: gi|302859166|gb|EFL82249.1| hypothetical protein HMPREF0189_01969 [Burkholderiales bacterium 1_1_47] # 1 97 1 97 97 173 100.0 2e-42 MKKGIFQKNFISAGLFFVLALSLVPIAILYGNEAQRNMVLFLCSLGSCAAGFAAIYVSEE NSKNQQQLIEAIVDATEELQKLRIAITDSGMTTNTKK >gi|301349793|gb|ADCQ01000057.1| GENE 72 82463 - 82741 108 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEKLLHPWEEFQSVQFWWNYLTYGWVIITTHFDLICLVYILKVKSKLPKCFQGELLSRL FPMDTETFLVLFSGYFLVFVVIPLSVIAILSF >gi|301349793|gb|ADCQ01000057.1| GENE 73 82783 - 82977 212 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEQKFFFILLLSGLCCLAIAPLFLFQNSERNSVSFTAPGLMLIGIAFVLISCCGFVGLD SYGG >gi|301349793|gb|ADCQ01000057.1| GENE 74 83645 - 83950 188 101 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINLDFHTAGLLFVTLLSLIAAGHIVVLSLICCFSHSLEIQVIIHKVNACLLVFQAILAA ALIGLYICRPDPTSSSDQADDSKLFELQTPPPVELHRRDQK >gi|301349793|gb|ADCQ01000057.1| GENE 75 83981 - 84292 248 103 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859168|gb|EFL82251.1| ## NR: gi|302859168|gb|EFL82251.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 103 1 103 103 207 100.0 2e-52 MNLKDYCSFLKEAGVADPRRYLATELGLSKATINSYICGRRLISPENCLTLVNLSRGHLT CEELRPDIPWKFAQLDRSNVENGRLKKEIKQYLSSPGAEALTA >gi|301349793|gb|ADCQ01000057.1| GENE 76 84488 - 85129 127 213 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859169|gb|EFL82252.1| ## NR: gi|302859169|gb|EFL82252.1| hypothetical protein HMPREF0189_01972 [Burkholderiales bacterium 1_1_47] # 1 213 18 230 230 419 100.0 1e-116 MYKSVANLNSALGRKRYDGTFNQIKNKSQPPSAKTPRVMGAEVAREIEMKLHLQPGWMDV VHDQPQTELIKESDNFLKSSFNRIRSYRLNSVTPSNLTFTLFDGEMKLSDYFIKSVLKAT SEENLRFVVVEDNSLKSKCKIGDALILDFGVNTFTREGIYLIEVNGEQLLRLISIDYEGG YQIRTDDFSQRLTDLSKIKILARALYVCTGTSL >gi|301349793|gb|ADCQ01000057.1| GENE 77 85173 - 85340 115 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859170|gb|EFL82253.1| ## NR: gi|302859170|gb|EFL82253.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 55 43 97 97 99 98.0 5e-20 MELNERQCNKDYLWEFRNRLTELQFQKVIDFKTKYSVDRLVEKHLKKCVDAKLYK >gi|301349793|gb|ADCQ01000057.1| GENE 78 85610 - 86539 319 309 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859171|gb|EFL82254.1| ## NR: gi|302859171|gb|EFL82254.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 309 1 309 309 526 100.0 1e-148 MSKSNQFESPCYFLSAEEYTQDYLSLPELQLACLFKLRSAYALKGSPLSEDDIEGLYPVY TPVHEKTLGKVLNKFFTKKGDVFVDIRIESQIEKRKEHQLNIEQLIEKEVQKRVARALAG MKGGLSKARNRKNQNISVSEEEFLTDEVPEEQQAICEEPEDFKQTSSKTVANGWQNPSKV VANAKQTSDKVLANSKQSSSKPLANSYQAPSKTVANGWQNASKVVANAKQTAGKTLANEN FATNEASQPVDFVENSESFQNTPDIEPEDDPSLACAHVCASDNPISDVFLINKKNKNKSE SVSESVVIS Prediction of potential genes in microbial genomes Time: Fri May 13 07:01:57 2011 Seq name: gi|301349792|gb|ADCQ01000058.1| Burkholderiales bacterium 1_1_47 cont1.58, whole genome shotgun sequence Length of sequence - 8370 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 3, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 585 - 806 200 ## gi|302859172|gb|EFL82255.1| conserved hypothetical protein 2 1 Op 2 . + CDS 836 - 1558 554 ## COG1484 DNA replication protein 3 1 Op 3 . + CDS 1555 - 1818 85 ## + Term 2027 - 2078 4.4 + Prom 2407 - 2466 3.4 4 2 Op 1 . + CDS 2699 - 2968 332 ## gi|302859175|gb|EFL82258.1| hypothetical protein HMPREF0189_01978 5 2 Op 2 . + CDS 2978 - 3604 377 ## gi|302859176|gb|EFL82259.1| hypothetical protein HMPREF0189_01979 6 2 Op 3 25/0.000 + CDS 3619 - 4494 677 ## COG1192 ATPases involved in chromosome partitioning 7 2 Op 4 . + CDS 4509 - 5612 597 ## COG1475 Predicted transcriptional regulators 8 2 Op 5 . + CDS 5666 - 6247 163 ## gi|302859179|gb|EFL82262.1| MbeCy 9 2 Op 6 . + CDS 6240 - 6551 148 ## gi|302859180|gb|EFL82263.1| hypothetical protein HMPREF0189_01983 10 2 Op 7 . + CDS 6612 - 6890 367 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 6909 - 6950 10.4 - Term 6891 - 6943 2.1 11 3 Tu 1 . - CDS 7025 - 7699 136 ## COG0819 Putative transcription activator - Prom 7730 - 7789 3.3 Predicted protein(s) >gi|301349792|gb|ADCQ01000058.1| GENE 1 585 - 806 200 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859172|gb|EFL82255.1| ## NR: gi|302859172|gb|EFL82255.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 73 1 73 73 101 100.0 2e-20 MISSLEREKVTVKRRKKKSERDYTEGLIQNPDGSWRPDPNYVPKKKKYSDRDWTEGLIKN PDGSYSLDPNYER >gi|301349792|gb|ADCQ01000058.1| GENE 2 836 - 1558 554 240 aa, chain + ## HITS:1 COG:ECs5321 KEGG:ns NR:ns ## COG: ECs5321 COG1484 # Protein_GI_number: 15834575 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Escherichia coli O157:H7 # 46 237 52 237 245 106 32.0 5e-23 MSSDTDNVQKTIKTCPVHGTSYVYSITDASGTRYTNGCPLCEAEKRCQAAFGQALIPARF TDQTFETYEVTNDGQKAAVSLCRDFVRRFGDYRKTGHGLLLTGRPGTGKTHLACSLLKEI IAGKKAALYTSLDQVFTAVKATWNSTDDSQKKYLKKLAGLDCLVIDEIGTNREISPREKD LFFTIINDRYEQLKPTILISNLSLRGEDSLEEFLDERTVDRIFETNTFVVFNWESYRGTK >gi|301349792|gb|ADCQ01000058.1| GENE 3 1555 - 1818 85 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKSGQQKKSLDRFIYESMGEKQYLISCLDDNLFKKALKGFRKEWPEIDSRTNGFRMCLEA LQASELFTEISFIDLHGTKFPLFRKKQ >gi|301349792|gb|ADCQ01000058.1| GENE 4 2699 - 2968 332 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859175|gb|EFL82258.1| ## NR: gi|302859175|gb|EFL82258.1| hypothetical protein HMPREF0189_01978 [Burkholderiales bacterium 1_1_47] # 1 89 1 89 89 170 100.0 2e-41 MRLIQSLNKSWKKIDWHKVLSGQIEPLPEQFKVVRLAYRPEGADKTYETRGYWTETFSSD VTFTVEYEGGLVHPVTTEVVAWRPLNIKP >gi|301349792|gb|ADCQ01000058.1| GENE 5 2978 - 3604 377 208 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859176|gb|EFL82259.1| ## NR: gi|302859176|gb|EFL82259.1| hypothetical protein HMPREF0189_01979 [Burkholderiales bacterium 1_1_47] # 1 208 1 208 208 418 100.0 1e-115 MTAPFNPEELCDQTLIGSIRMLMKDDSVFPEIFSAAFENRNANNLVFSIPSDLSITGKQI DVIADRAHLLKESQYRPHEWNAWPDVIPPRLDTEPAINGETRECDYWLVKLKNGSFRTGK ITKDKYWVRFENQIAAYREFSPRPAEAVLENQTELDPGGWNAYPKFKPDSEEVYEVMLKG GLQRSAGWKKGNWTFYSEEITAFKKIKD >gi|301349792|gb|ADCQ01000058.1| GENE 6 3619 - 4494 677 291 aa, chain + ## HITS:1 COG:BH4058 KEGG:ns NR:ns ## COG: BH4058 COG1192 # Protein_GI_number: 15616620 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus halodurans # 2 187 3 195 253 78 31.0 2e-14 MKTLAIINEKGGVGKSFIATQFALFCRFKLGNRVLVVDLDQQRNTSDILINSGLCVPTET TAGLIMKNGGLVKAEEPFMVIPGDDNLLELESMRDAAGITQNLYSALDAVSNKFDLCIID CSPSADVRQLIALSLSTHYLIPFQVKAESISGVEKTLARAKVIQENVNNSLEFLGLLMSM VKMQGIQKKNFEWVIEQTQNLLLKKYEPKTGKFEGVCCIYERSEYTAAQQYYRPVFFSEN GKPRREALELARVWVSIFKQLGLTPRKPIQIRKCEDSDKLTAVETQPVAEP >gi|301349792|gb|ADCQ01000058.1| GENE 7 4509 - 5612 597 367 aa, chain + ## HITS:1 COG:CT688 KEGG:ns NR:ns ## COG: CT688 COG1475 # Protein_GI_number: 15605421 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Chlamydia trachomatis # 25 183 6 167 281 98 39.0 2e-20 MGLNLNLGNINKAAKDFTHRRSEASDETMRDVGVEVIKADPRQPRKEFDEEALKELAESI KAHGLIQPIVLRPSPDKEDEYYIIAGERRFRAVKLNGDKTIRAIVKKTLKPEEIGYVQMA ENIKRANLTVVEIAEFICRQLEAGDKQAEVVEKLGLNKAIVSQYAVWPELPECIKEALTS KKIGSIQSAYALFKTWQEYPEETAKFVAENEKISQAEARKFEPKSLYVQTFQDQEDISQP SDQVSDEPVLDTSVSPATKDIVASEESENKPEECGSIDNYEEKTTSDEEEHSEKSEELET AADDFLQVQSEESTYKKPMILCLIEGRECELLYKKRTLDGFVVVKYEDGTEEEVPAEDVM LNRIIEA >gi|301349792|gb|ADCQ01000058.1| GENE 8 5666 - 6247 163 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859179|gb|EFL82262.1| ## NR: gi|302859179|gb|EFL82262.1| MbeCy [Burkholderiales bacterium 1_1_47] # 1 193 8 200 200 310 100.0 3e-83 MSVWLTQEEKAVWKQLARLNNMNLSAYTHFVIKEVIKESLNLPELKVSLDVDRESSEEDK FPIKLRMTKSELEAIRKLAAVRGQTRQALIVSAVRELLLNKSQIDPKEYRLISDSTLSLN RIGVNLNQIARVLNEQNKSGQLNPSDIAGIPAVLKQLNQKIDLHIKEIDEFLSQHKDRLK IRSAVKKTEKENE >gi|301349792|gb|ADCQ01000058.1| GENE 9 6240 - 6551 148 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859180|gb|EFL82263.1| ## NR: gi|302859180|gb|EFL82263.1| hypothetical protein HMPREF0189_01983 [Burkholderiales bacterium 1_1_47] # 1 103 1 103 103 167 100.0 2e-40 MNESVKKWLEEKRAELAGRRDVAIFIEAKDVLDAIEQLSKPRLFSDSRLVESLRWQYSEC ETRKQFLRKVLTEQFKFVGPNANCPEPQNTDSQVERRRARETR >gi|301349792|gb|ADCQ01000058.1| GENE 10 6612 - 6890 367 92 aa, chain + ## HITS:1 COG:BMEI0877 KEGG:ns NR:ns ## COG: BMEI0877 COG0776 # Protein_GI_number: 17987160 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Brucella melitensis # 1 91 3 93 93 84 57.0 7e-17 MNKTELVAAVAEETGKSKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAARTG RNPATGKEIKILASIQPKFVAGKMFKDALNGK >gi|301349792|gb|ADCQ01000058.1| GENE 11 7025 - 7699 136 224 aa, chain - ## HITS:1 COG:SP0722 KEGG:ns NR:ns ## COG: SP0722 COG0819 # Protein_GI_number: 15900619 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Streptococcus pneumoniae TIGR4 # 33 224 23 215 230 67 27.0 2e-11 MLIPNIVRSEELWTEEAEKRALETVRSIINKGFIPSAISGNLPLKVFLKYLEQNALYLKN YADVLSDLALKTSNREESDFLRKSSKEATALVEYTKELYEHIGKKKFPTIIKPCMENSEY IQFESNLVRNSSFSIGLASVYPCFWVYGEIGKAIQAKAILIENPYHSWLEGLGDPQYLKT VDQIRGFLNEHAVKLKDKEKNKMTEAFLKGCNLEQKFFDSAFHN Prediction of potential genes in microbial genomes Time: Fri May 13 07:03:01 2011 Seq name: gi|301349791|gb|ADCQ01000059.1| Burkholderiales bacterium 1_1_47 cont1.59, whole genome shotgun sequence Length of sequence - 4210 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 151 - 198 9.9 1 1 Tu 1 . - CDS 210 - 338 66 ## - Prom 520 - 579 4.0 2 2 Tu 1 . - CDS 694 - 1248 165 ## HAPS_1956 type IIS restriction enzyme protein - Prom 1425 - 1484 6.1 - Term 1743 - 1799 11.1 3 3 Tu 1 . - CDS 1800 - 3860 1034 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 3913 - 3972 2.8 Predicted protein(s) >gi|301349791|gb|ADCQ01000059.1| GENE 1 210 - 338 66 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAPALAVATGVVVGNCKGQKVCTYKLFEKIEPIISFRVEPGF >gi|301349791|gb|ADCQ01000059.1| GENE 2 694 - 1248 165 184 aa, chain - ## HITS:1 COG:no KEGG:HAPS_1956 NR:ns ## KEGG: HAPS_1956 # Name: bcgIB # Def: type IIS restriction enzyme protein # Organism: H.parasuis # Pathway: not_defined # 1 184 170 355 356 223 59.0 2e-57 MTAEEKNALNNLGNIKYKSYNLKSLFGKSTRGKRLKSEDRVPGNLPFVTAGEADEGVSDF IGNKVTVFAKNTATIDMFGSAKYRSYEYGADDHVAVVHTEKLKEDAAIFVTSAIHKSSHN GQFDYGRNFYAKDADALNILLPEKDGRPDYELMKLVISAVKKLIVKAVVDFTNNRLESYH TLQN >gi|301349791|gb|ADCQ01000059.1| GENE 3 1800 - 3860 1034 686 aa, chain - ## HITS:1 COG:jhp1365 KEGG:ns NR:ns ## COG: jhp1365 COG0286 # Protein_GI_number: 15612430 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori J99 # 8 676 2 673 678 799 63.0 0 MTKTVTKNKVRSVEPLIADLANGWMKSYNLDYKLEQEPLNTEIDKALDEYLSKSGGKGGN RPDAKLLLQDKNLNYWPVLIEYKGYKGKLEKLDSCRNIDNLTARNEPNYSNIKSFAVNGA VHYANALLHHTSYTDIIAIGMTGYKDELGKLKHSIAVYYVSKNNLGVGQKVGEYTDLSFL PPPEFDKFIEKVKTLNISAEQLEQLRERKEQEIKASLVKLNNDIYQNEKNLSEDDRVYLV ASSIIATLGVPGKVKPLEKEDLKSSPESGETDGEIILRKIKAFLTEKALPETKKELIIRT LQNTLTSDNLNKITAGETQLKRVFNKIVDDLGRYYKIGLTTDFTGKLFNEMYGWLGFSQD KLNDVVLTPSYVAKLLVKLARVDRNSYVWDFATGSAGLLVAAMNEMLIDAKNHITSPDEL ARKEATIRAEQLLGLEVLPSIYMLAILNMILMGDGSSNILNKDSLHDFDGKYGFGKITEK FPASAFVLNPPYSAAGNGMIFVEKALGMMNKGYAAIIIQGSSGNGKAVDYNRRILKKHTL LASIKMPIDLFIGKSNVQTYVYVFRVNEPHQADDTVKFIDFSNDGYTRTNRKKASVNLKD TDHAKERYDEVVQLVRFGKDKLKYLTEKEYYEGKIDPKSGADWNQSAPVDTQPKLKDFKK TISDYLAWEITNLLKNDHEENFLLGK Prediction of potential genes in microbial genomes Time: Fri May 13 07:03:15 2011 Seq name: gi|301349790|gb|ADCQ01000060.1| Burkholderiales bacterium 1_1_47 cont1.60, whole genome shotgun sequence Length of sequence - 6343 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 6, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 279 - 1073 200 ## COG0582 Integrase - TRNA 1268 - 1358 81.7 # Ser GGA 0 0 + Prom 1428 - 1487 5.3 2 2 Op 1 . + CDS 1581 - 2360 579 ## COG0693 Putative intracellular protease/amidase 3 2 Op 2 . + CDS 2386 - 3096 495 ## COG2859 Uncharacterized protein conserved in bacteria - Term 3086 - 3129 11.3 4 3 Tu 1 . - CDS 3144 - 3839 680 ## COG0120 Ribose 5-phosphate isomerase - Prom 4083 - 4142 7.4 + Prom 4029 - 4088 5.9 5 4 Tu 1 . + CDS 4209 - 4625 211 ## CHY_1697 putative prophage LambdaCh01, repressor protein + Term 4628 - 4666 1.2 - Term 4603 - 4634 2.1 6 5 Tu 1 . - CDS 4655 - 5752 932 ## gi|302859191|gb|EFL82274.1| hypothetical protein HMPREF0189_01994 - Prom 5783 - 5842 2.4 + Prom 6096 - 6155 5.2 7 6 Tu 1 . + CDS 6175 - 6343 168 ## gi|302860879|gb|EFL83955.1| transposase, IS4 family protein Predicted protein(s) >gi|301349790|gb|ADCQ01000060.1| GENE 1 279 - 1073 200 264 aa, chain - ## HITS:1 COG:Z5890 KEGG:ns NR:ns ## COG: Z5890 COG0582 # Protein_GI_number: 15804869 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 EDL933 # 15 238 41 249 301 82 31.0 7e-16 MQVSTVLEIKNLTAEGYYSITGSRGLQLRVTKYGKEFYFRYSWKGKRQLFKIGTSDSVSL SDARKKAIELSELVRKGTNPKEQKTAGKEECTVEVNRKTFKECALDWVKERATNNFWKNN VKGEANTLSRLSNHVFPKIGEKAIESIEPEDIRDLLLPVWNRSPSTSSKVLADVRAILRW AIALRIRENRENPADLSGALGVLMEPYNKNRKEEENFSGLDFHEIPEFVKDINTLRSRTA EMLLFSIFLAARSKPCLVLEKVDS >gi|301349790|gb|ADCQ01000060.1| GENE 2 1581 - 2360 579 259 aa, chain + ## HITS:1 COG:AGl1155 KEGG:ns NR:ns ## COG: AGl1155 COG0693 # Protein_GI_number: 15890694 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 40 257 11 228 230 217 49.0 2e-56 MRMLRRNALSFLTCMPIAAAAGGTSAAAVPEEKPKTSGKILFVITSHGELGNTGKKTGYW LSEVTHPWKVLKDAGYEIDFVSPQGGECPVEGQDASDPINKAFAQDLSAQRKINFTMKPS EVKPEEYKAVFFAGGHGVMWDFPDNKELAAITSKIYENGGVVAAVCHGPAALVNVKLSNG KYLVDGKKINSFTNSEEKGIGLDKVVPFALETALVKHGAKFQCSDNFQSHVVVNNRVITG QNPMSAMAVGDAIRTALQN >gi|301349790|gb|ADCQ01000060.1| GENE 3 2386 - 3096 495 236 aa, chain + ## HITS:1 COG:VCA0167 KEGG:ns NR:ns ## COG: VCA0167 COG2859 # Protein_GI_number: 15600937 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 8 236 33 262 262 207 47.0 2e-53 MEGKIIPSIILAAGFIGGIALFGNQVGDGVNALLNKDRIVTVKGLCEKEVKANHVIWPLS FNEMGNDLATVYDNLEKKQDTVFDFLKKGGIDPSEISLAAPKVNDTLANNYGPNRPPFRY IITQVITIATDKVDTVRKLMEAQRELLKQGVALTNDYSYMINYSFTGLNEIKPKMIEIAT KNAKEAAKKFAEDSGSKLGKIRRANQGVFSITDRDDNTPFIKNVRVVTTVEYFLND >gi|301349790|gb|ADCQ01000060.1| GENE 4 3144 - 3839 680 231 aa, chain - ## HITS:1 COG:RSc1232 KEGG:ns NR:ns ## COG: RSc1232 COG0120 # Protein_GI_number: 17545951 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Ralstonia solanacearum # 4 216 3 224 228 228 56.0 6e-60 MELQNQLKQMAAKAALEYVVEGEYLGVGTGTTVGFFITELATSGKKVKGCVSSSEATTRQ LLAYGIPVCDLNDIVDYLPVYIDGCDEIDGNFCMIKGGGGALTREKIVAQASEKFVCIAD ESKVVKQLGAFPLPLEVIPMAVSSVSRAMEDLGGHPVVRDFITDNGNNIIDVHGLQIKEP QLLENAINKIPGVVTCGIFAHRGADVLLVASEAGIKVTKPKKSFFSSRKAK >gi|301349790|gb|ADCQ01000060.1| GENE 5 4209 - 4625 211 138 aa, chain + ## HITS:1 COG:no KEGG:CHY_1697 NR:ns ## KEGG: CHY_1697 # Name: not_defined # Def: putative prophage LambdaCh01, repressor protein # Organism: C.hydrogenoformans # Pathway: not_defined # 13 79 5 69 254 64 49.0 9e-10 MGSDPKIRRTLCQRLLQLRHENNLTQAELSSLSAIPQPVLSLYENQGSSRSPTLYALVRL ANSLNVSTDYLLGRTDDKSGARSLISEDSVISQLSRRDRQVLLRVAEGLHAASVQKQEAM KSSRTQKIVPPADVKNAR >gi|301349790|gb|ADCQ01000060.1| GENE 6 4655 - 5752 932 365 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302859191|gb|EFL82274.1| ## NR: gi|302859191|gb|EFL82274.1| hypothetical protein HMPREF0189_01994 [Burkholderiales bacterium 1_1_47] # 1 365 1 365 365 694 100.0 0 MKIFVRKNILLSFSVVAALLLSACSMDPDVEITNENVKDAVSSLSKADAAKVAALGGDKY LLGKTLNKVSKQLPADYYNYEINELVEHARLNRNFNLAQANKGELTPETVRSDFAESPEE KSIEISEISMQDHYLRALRTELKRPLPLGTATLGKGVLTCRKKDNLIALDELESQNAEAF KKEKARKLRRKECHEMKRPAKLTLRAEEKGFGGKTIFRTARGWVDARDLTDRTPAEELAK MREEAQEKLTYLKNHPAPQFYHVFRPLLDISAKNPTRIKLAQKAILINMAQHKESWDQAT ARFVQEQRDFARSEYSCSFEKDCSENQKGNLRMAYYIHTAAPKNVKVGTLPCEISNVSGC RNFTN >gi|301349790|gb|ADCQ01000060.1| GENE 7 6175 - 6343 168 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 56 1 56 595 115 98.0 6e-25 MANPKLPPILINKAGSVYYVYTYKNVWDRELKRSKRGESRKIGTILGGQKDGKIRF Prediction of potential genes in microbial genomes Time: Fri May 13 07:03:42 2011 Seq name: gi|301349789|gb|ADCQ01000061.1| Burkholderiales bacterium 1_1_47 cont1.61, whole genome shotgun sequence Length of sequence - 4105 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 361 - 437 85.7 # Arg ACG 0 0 - Term 287 - 343 11.2 2 2 Tu 1 . - CDS 532 - 1296 271 ## Acfer_0733 exopolysaccharide biosynthesis protein - Prom 1360 - 1419 7.4 + Prom 1386 - 1445 4.1 3 3 Op 1 . + CDS 1500 - 3224 2186 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 4 3 Op 2 . + CDS 3274 - 3618 309 ## Glov_3625 flavocytochrome c + Term 3657 - 3698 6.1 Predicted protein(s) >gi|301349789|gb|ADCQ01000061.1| GENE 1 3 - 251 305 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302860879|gb|EFL83955.1| ## NR: gi|302860879|gb|EFL83955.1| transposase, IS4 family protein [Burkholderiales bacterium 1_1_47] # 1 82 514 595 595 160 97.0 3e-38 KENKTARKLNLVYESDAKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGP ETPEDVQEEPEAETLLGTDIEI >gi|301349789|gb|ADCQ01000061.1| GENE 2 532 - 1296 271 254 aa, chain - ## HITS:1 COG:no KEGG:Acfer_0733 NR:ns ## KEGG: Acfer_0733 # Name: not_defined # Def: exopolysaccharide biosynthesis protein # Organism: A.fermentans # Pathway: not_defined # 2 254 3 257 257 261 51.0 2e-68 MLKILVACHRPYRLPHKEPYLPIEVGAQKRADLHLGGVRDNEGVNISQKNPNYCELTALY WARHNLPETATAVGLTHYRRYFGIKKTSDPLKDIFSLSDWTEFLKESPVILPPKRNYFIE TVESQYVHAHHRQDIETLRAVLSEKHSEYLPAFEKLMSGKKTHILNMFVMRRDLFNQYCD WLFDVLFEVEKRLDISSYSVNDARVFGFLSERLLDVWLNTNNISYIEKPVVLTEKINWIK KGSSFILRKLGIKR >gi|301349789|gb|ADCQ01000061.1| GENE 3 1500 - 3224 2186 574 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 194 567 175 500 506 90 25.0 9e-18 MSKSVVTSRRSFIKGAVAGAVSAGVAPVMAAPAPQNGLPAKWDGEADVVIVGFGGAGATT GIVAAQNGAKVIILEKNPQNHHYSNTRMSGGIFHCPFKDGDPKALKDYAQAMFSGENIDW KEEGEIPEYSEGLAQLWADLSPTNLEFLQSLDPAFIGGSQPGFNKASFPNFPGAKECKYN AYRATYQKRMKNFNQKSVDSPKEETSSGEAFWRCLEEGVKKQGDNIKVYYETPASSLLKN AKGEVVGVVATQNGKPVYFRGKKAVVLCSGGYEYNKPMRQAFLEGPGVDGWAFYGTTSNT GDGIAMGMAAGAGLQKVGKSAARVIVPAQTRYNGMRIGSITPAVGSANSIVVDNYGNRYE AETKVTDNPSRYFFYKAAVTFDISSLSYPRTPSWMIFDEKLRTSKPLVGLGISTVGYGFI DWDEKNEKPIASGLILKADSIEELANKIKQHPENKGRMVPANLVEQVTRFNKFCDDKKDA DFGRRPATLGKIEQGPFYAMPLVAGGPNTKGGLLADADRRVLAWDGTPIPRLYSVGEIAS ALKFVYQGGGNLTECLVYGRHVGKNVAGLPDTTL >gi|301349789|gb|ADCQ01000061.1| GENE 4 3274 - 3618 309 114 aa, chain + ## HITS:1 COG:no KEGG:Glov_3625 NR:ns ## KEGG: Glov_3625 # Name: not_defined # Def: flavocytochrome c # Organism: G.lovleyi # Pathway: not_defined # 15 114 19 122 596 75 36.0 8e-13 MKKVLVLLLLSFLAGSTAFAADGGPYLADRHVARGMKCADCHTPDNKLKTSGDLDVCASC HGDYQAMIKKTEGRYEVNPHGQHEGALPCSECHKGHKPGVNYCGGCHNFVYKVP Prediction of potential genes in microbial genomes Time: Fri May 13 07:05:23 2011 Seq name: gi|301349788|gb|ADCQ01000062.1| Burkholderiales bacterium 1_1_47 cont1.62, whole genome shotgun sequence Length of sequence - 144105 bp Number of predicted genes - 124, with homology - 123 Number of transcription units - 55, operones - 26 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 188 180 ## gi|302858722|gb|EFL81825.1| transposase - Prom 213 - 272 10.0 - Term 215 - 272 14.9 2 2 Tu 1 . - CDS 338 - 658 380 ## PFLU0572 phosphate starvation-inducible protein precursor - Prom 692 - 751 2.5 + Prom 654 - 713 4.3 3 3 Op 1 . + CDS 961 - 1443 291 ## BpOF4_14635 hypothetical protein 4 3 Op 2 . + CDS 1477 - 3141 2168 ## COG1966 Carbon starvation protein, predicted membrane protein + Term 3169 - 3208 6.1 - Term 3465 - 3521 1.0 5 4 Tu 1 . - CDS 3584 - 4030 301 ## Bpet0580 hypothetical protein - Prom 4076 - 4135 4.6 6 5 Op 1 . - CDS 4214 - 4780 377 ## COG3023 Negative regulator of beta-lactamase expression 7 5 Op 2 . - CDS 4780 - 5046 300 ## gi|302858937|gb|EFL82021.1| hypothetical protein HMPREF0189_02005 8 5 Op 3 . - CDS 5050 - 5883 839 ## COG4137 ABC-type uncharacterized transport system, permease component - Prom 5908 - 5967 4.3 + Prom 5793 - 5852 4.2 9 6 Op 1 . + CDS 5951 - 7345 1835 ## COG0541 Signal recognition particle GTPase 10 6 Op 2 14/0.000 + CDS 7345 - 7950 320 ## COG0817 Holliday junction resolvasome, endonuclease subunit 11 6 Op 3 29/0.000 + CDS 7954 - 8523 638 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 12 6 Op 4 . + CDS 8527 - 9567 1005 ## COG2255 Holliday junction resolvasome, helicase subunit 13 6 Op 5 . + CDS 9551 - 10273 887 ## PSPPH_0180 hypothetical protein 14 6 Op 6 8/0.125 + CDS 10331 - 13897 1542 ## COG1330 Exonuclease V gamma subunit 15 6 Op 7 13/0.000 + CDS 13909 - 17334 1958 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 16 6 Op 8 . + CDS 17336 - 19282 1121 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 19307 - 19348 3.0 17 7 Tu 1 . + CDS 19476 - 19820 121 ## gi|302858947|gb|EFL82031.1| toxin-antitoxin system, toxin component, Fic family - Term 20220 - 20258 1.0 18 8 Op 1 13/0.000 - CDS 20291 - 22102 556 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 19 8 Op 2 49/0.000 - CDS 22102 - 23517 1151 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 20 8 Op 3 38/0.000 - CDS 23514 - 24491 889 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 21 8 Op 4 . - CDS 24488 - 26755 2071 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 26781 - 26840 6.0 + Prom 26773 - 26832 6.9 22 9 Op 1 13/0.000 + CDS 27030 - 27446 438 ## COG0824 Predicted thioesterase 23 9 Op 2 30/0.000 + CDS 27472 - 28155 892 ## COG0811 Biopolymer transport proteins 24 9 Op 3 . + CDS 28165 - 28587 459 ## COG0848 Biopolymer transport protein 25 9 Op 4 . + CDS 28587 - 29786 1244 ## COG3468 Type V secretory pathway, adhesin AidA 26 9 Op 5 . + CDS 29804 - 31291 1669 ## COG3264 Small-conductance mechanosensitive channel + Term 31330 - 31373 8.2 27 10 Tu 1 . + CDS 31413 - 32063 342 ## COG2364 Predicted membrane protein 28 11 Tu 1 . - CDS 32106 - 32402 128 ## COG3636 Predicted transcriptional regulator + Prom 32787 - 32846 4.1 29 12 Tu 1 . + CDS 32874 - 33320 139 ## ECSP_0455 hypothetical protein + Term 33558 - 33593 -0.7 - Term 33412 - 33461 14.0 30 13 Tu 1 . - CDS 33482 - 35230 2193 ## COG0442 Prolyl-tRNA synthetase - Prom 35328 - 35387 5.1 + Prom 35263 - 35322 4.0 31 14 Tu 1 . + CDS 35349 - 35894 547 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 35912 - 35960 0.4 - Term 35846 - 35882 6.1 32 15 Tu 1 . - CDS 35909 - 37039 1447 ## COG0263 Glutamate 5-kinase - Prom 37133 - 37192 2.6 - Term 37179 - 37241 5.4 33 16 Op 1 14/0.000 - CDS 37250 - 38362 893 ## PROTEIN SUPPORTED gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 - Term 38414 - 38456 7.3 34 16 Op 2 32/0.000 - CDS 38481 - 38741 316 ## PROTEIN SUPPORTED gi|88798155|ref|ZP_01113741.1| 50S ribosomal protein L27 35 16 Op 3 . - CDS 38770 - 39081 345 ## PROTEIN SUPPORTED gi|56475877|ref|YP_157466.1| 50S ribosomal protein L21 - Prom 39160 - 39219 4.9 + Prom 39261 - 39320 6.2 36 17 Tu 1 . + CDS 39352 - 40332 902 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 40436 - 40480 6.4 + TRNA 40353 - 40429 87.8 # Pro CGG 0 0 37 18 Op 1 27/0.000 - CDS 41180 - 42406 476 ## COG0732 Restriction endonuclease S subunits 38 18 Op 2 4/0.188 - CDS 42432 - 43718 431 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 43929 - 43988 3.5 39 19 Tu 1 . - CDS 44075 - 47275 681 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 47306 - 47365 4.0 + Prom 47309 - 47368 3.0 40 20 Tu 1 . + CDS 47438 - 47653 128 ## - Term 48391 - 48436 1.2 41 21 Tu 1 . - CDS 48483 - 49541 470 ## gi|302858971|gb|EFL82055.1| conserved hypothetical protein - Prom 49601 - 49660 2.5 42 22 Tu 1 . - CDS 50266 - 50700 265 ## gi|302858972|gb|EFL82056.1| hypothetical protein HMPREF0189_02040 - Prom 50726 - 50785 3.5 - Term 51029 - 51069 1.1 43 23 Tu 1 . - CDS 51195 - 52361 924 ## COG0477 Permeases of the major facilitator superfamily - Prom 52387 - 52446 3.2 + Prom 52393 - 52452 2.1 44 24 Op 1 . + CDS 52517 - 53515 313 ## PROTEIN SUPPORTED gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 45 24 Op 2 7/0.125 + CDS 53591 - 54193 382 ## COG0237 Dephospho-CoA kinase + Term 54236 - 54275 -0.9 + Prom 54343 - 54402 4.1 46 25 Op 1 7/0.125 + CDS 54428 - 55198 461 ## COG4582 Uncharacterized protein conserved in bacteria 47 25 Op 2 . + CDS 55204 - 55437 281 ## COG3024 Uncharacterized protein conserved in bacteria + Term 55631 - 55671 -0.8 - Term 55321 - 55355 -0.4 48 26 Op 1 1/0.500 - CDS 55440 - 55835 337 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 49 26 Op 2 1/0.500 - CDS 55825 - 56709 682 ## COG2607 Predicted ATPase (AAA+ superfamily) 50 26 Op 3 2/0.312 - CDS 56718 - 57947 1560 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) - Prom 57985 - 58044 3.7 - Term 58010 - 58053 2.1 51 27 Tu 1 . - CDS 58070 - 60736 3398 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 60808 - 60867 5.2 + Prom 60877 - 60936 3.3 52 28 Tu 1 . + CDS 60964 - 61524 528 ## gi|302858982|gb|EFL82066.1| conserved hypothetical protein + Term 61590 - 61634 -0.7 - Term 61519 - 61549 3.3 53 29 Op 1 11/0.062 - CDS 61572 - 62489 1077 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 54 29 Op 2 35/0.000 - CDS 62505 - 64157 1875 ## COG0206 Cell division GTPase - Prom 64206 - 64265 2.6 55 29 Op 3 25/0.000 - CDS 64354 - 65676 1084 ## COG0849 Actin-like ATPase involved in cell division 56 29 Op 4 18/0.000 - CDS 65666 - 66475 597 ## COG1589 Cell division septal protein 57 29 Op 5 11/0.062 - CDS 66479 - 67420 1070 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 58 29 Op 6 26/0.000 - CDS 67424 - 68782 1506 ## COG0773 UDP-N-acetylmuramate-alanine ligase 59 29 Op 7 31/0.000 - CDS 68815 - 69897 1090 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 60 29 Op 8 25/0.000 - CDS 69894 - 71129 1394 ## COG0772 Bacterial cell division membrane protein 61 29 Op 9 28/0.000 - CDS 71123 - 72556 1407 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 62 29 Op 10 28/0.000 - CDS 72563 - 73726 1398 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 63 29 Op 11 26/0.000 - CDS 73727 - 75115 1238 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 64 29 Op 12 26/0.000 - CDS 75108 - 76574 1245 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 65 29 Op 13 . - CDS 76567 - 78474 1985 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 66 29 Op 14 . - CDS 78471 - 78773 331 ## gi|302858996|gb|EFL82080.1| cell division protein FtsL 67 29 Op 15 29/0.000 - CDS 78770 - 79738 938 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 68 29 Op 16 . - CDS 79756 - 80007 238 ## COG2001 Uncharacterized protein conserved in bacteria + Prom 80714 - 80773 3.2 69 30 Tu 1 . + CDS 80801 - 81994 1465 ## Ctu_12560 palmitoyl transferase + Term 82015 - 82053 1.5 + Prom 82129 - 82188 4.2 70 31 Tu 1 . + CDS 82208 - 82369 206 ## gi|302859000|gb|EFL82084.1| hypothetical protein HMPREF0189_02068 + Term 82421 - 82459 -1.0 + Prom 82725 - 82784 5.5 71 32 Tu 1 . + CDS 82806 - 84605 1165 ## PTH_0149 transposase + Prom 84971 - 85030 3.2 72 33 Op 1 . + CDS 85070 - 86362 1702 ## COG0001 Glutamate-1-semialdehyde aminotransferase 73 33 Op 2 . + CDS 86389 - 88467 1676 ## COG4232 Thiol:disulfide interchange protein 74 34 Op 1 . + CDS 88570 - 89220 1008 ## gi|302859004|gb|EFL82088.1| putative serine/threonine-protein kinase + Term 89256 - 89288 3.0 75 34 Op 2 . + CDS 89299 - 89595 433 ## gi|302859005|gb|EFL82089.1| hypothetical protein HMPREF0189_02073 - Term 89571 - 89613 5.5 76 35 Op 1 . - CDS 89645 - 90454 856 ## blr4068 hypothetical protein 77 35 Op 2 . - CDS 90500 - 91870 2082 ## COG3069 C4-dicarboxylate transporter 78 35 Op 3 . - CDS 91873 - 93303 1854 ## COG0165 Argininosuccinate lyase - Prom 93333 - 93392 1.6 + Prom 93289 - 93348 4.6 79 36 Tu 1 . + CDS 93472 - 94437 559 ## COG0583 Transcriptional regulator + Term 94533 - 94570 -0.6 - Term 94293 - 94354 5.1 80 37 Tu 1 . - CDS 94434 - 95249 999 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 95281 - 95340 4.0 - Term 95302 - 95356 -0.8 81 38 Tu 1 . - CDS 95384 - 96586 1257 ## COG0477 Permeases of the major facilitator superfamily - Prom 96618 - 96677 2.6 82 39 Op 1 41/0.000 - CDS 96794 - 98437 2036 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 83 39 Op 2 . - CDS 98478 - 98765 554 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 98863 - 98922 5.7 + Prom 98822 - 98881 4.3 84 40 Op 1 . + CDS 98981 - 100408 1315 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 85 40 Op 2 . + CDS 100456 - 100758 551 ## HEAR3351 hypothetical protein 86 40 Op 3 . + CDS 100786 - 101235 420 ## gi|302859016|gb|EFL82100.1| conserved hypothetical protein 87 40 Op 4 . + CDS 101222 - 101602 454 ## gi|302859017|gb|EFL82101.1| hypothetical protein HMPREF0189_02085 + Term 101619 - 101658 1.7 - Term 101612 - 101642 3.4 88 41 Op 1 . - CDS 101693 - 103015 1615 ## COG1253 Hemolysins and related proteins containing CBS domains 89 41 Op 2 2/0.312 - CDS 103012 - 103512 279 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 90 41 Op 3 12/0.062 - CDS 103509 - 104042 438 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 91 41 Op 4 11/0.062 - CDS 104039 - 105073 789 ## COG0611 Thiamine monophosphate kinase 92 41 Op 5 17/0.000 - CDS 105066 - 105545 590 ## COG0781 Transcription termination factor 93 41 Op 6 2/0.312 - CDS 105535 - 106035 664 ## COG0054 Riboflavin synthase beta-chain - Prom 106056 - 106115 3.6 94 42 Op 1 16/0.000 - CDS 106138 - 106746 946 ## COG0307 Riboflavin synthase alpha chain 95 42 Op 2 14/0.000 - CDS 106764 - 107855 1132 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 96 42 Op 3 4/0.188 - CDS 107852 - 108325 505 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 97 42 Op 4 . - CDS 108347 - 109639 1680 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 109660 - 109719 3.5 98 43 Op 1 8/0.125 + CDS 109874 - 111628 688 ## COG0642 Signal transduction histidine kinase 99 43 Op 2 . + CDS 111625 - 112248 430 ## COG4566 Response regulator 100 43 Op 3 1/0.500 + CDS 112245 - 113630 593 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 113643 - 113702 2.7 101 44 Op 1 . + CDS 113750 - 115471 1869 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 102 44 Op 2 . + CDS 115528 - 115869 291 ## Sputcn32_0810 flavocytochrome c + Term 115904 - 115944 1.1 103 45 Tu 1 . + CDS 116207 - 116578 649 ## COG0316 Uncharacterized conserved protein + Term 116604 - 116637 3.8 - Term 116589 - 116629 -0.6 104 46 Op 1 1/0.500 - CDS 116631 - 117737 1006 ## COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases 105 46 Op 2 . - CDS 117786 - 119114 1312 ## COG0739 Membrane proteins related to metalloendopeptidases - Prom 119224 - 119283 8.3 + Prom 119196 - 119255 3.9 106 47 Op 1 1/0.500 + CDS 119298 - 120542 360 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 107 47 Op 2 . + CDS 120552 - 121004 448 ## COG1490 D-Tyr-tRNAtyr deacylase 108 47 Op 3 . + CDS 121013 - 121666 632 ## COG1881 Phospholipid-binding protein + Term 121676 - 121718 12.3 109 48 Tu 1 . - CDS 121724 - 122782 900 ## COG0002 Acetylglutamate semialdehyde dehydrogenase - Prom 122817 - 122876 4.6 - Term 122875 - 122914 3.0 110 49 Op 1 59/0.000 - CDS 122954 - 123346 546 ## PROTEIN SUPPORTED gi|187479439|ref|YP_787464.1| 30S ribosomal protein S9 111 49 Op 2 . - CDS 123350 - 123778 614 ## PROTEIN SUPPORTED gi|15677879|ref|NP_275047.1| 50S ribosomal protein L13 - Prom 123910 - 123969 5.3 - Term 123956 - 124012 1.3 112 50 Op 1 5/0.125 - CDS 124013 - 125476 1499 ## COG0578 Glycerol-3-phosphate dehydrogenase 113 50 Op 2 . - CDS 125479 - 126978 1027 ## COG0554 Glycerol kinase + Prom 127274 - 127333 2.5 114 51 Tu 1 . + CDS 127421 - 127732 190 ## PROTEIN SUPPORTED gi|74317465|ref|YP_315205.1| SSU ribosomal protein S30P / sigma 54 modulation protein + Term 127781 - 127818 2.1 + Prom 127795 - 127854 4.7 115 52 Tu 1 . + CDS 127983 - 133553 5556 ## COG0178 Excinuclease ATPase subunit + Term 133578 - 133613 3.4 + Prom 133568 - 133627 6.3 116 53 Tu 1 . + CDS 133680 - 134186 319 ## Bmur_0604 transcriptional regulator, MarR family + Term 134206 - 134248 12.6 - Term 134200 - 134228 2.1 117 54 Op 1 22/0.000 - CDS 134246 - 135382 1235 ## COG0795 Predicted permeases 118 54 Op 2 . - CDS 135379 - 136473 794 ## COG0795 Predicted permeases - Prom 136541 - 136600 4.3 - Term 136543 - 136577 -0.7 119 55 Op 1 44/0.000 - CDS 136654 - 137682 620 ## COG4608 ABC-type oligopeptide transport system, ATPase component 120 55 Op 2 44/0.000 - CDS 137679 - 138713 567 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 121 55 Op 3 1/0.500 - CDS 138719 - 139594 798 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Term 139602 - 139629 -0.8 122 55 Op 4 . - CDS 139644 - 140861 1000 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 123 55 Op 5 38/0.000 - CDS 140867 - 141847 312 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 124 55 Op 6 . - CDS 141909 - 143504 1785 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 143577 - 143636 5.3 - 5S_RRNA 143700 - 143770 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349788|gb|ADCQ01000062.1| GENE 1 2 - 188 180 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858722|gb|EFL81825.1| ## NR: gi|302858722|gb|EFL81825.1| transposase [Burkholderiales bacterium 1_1_47] # 1 62 1 62 307 129 100.0 8e-29 MKTPQLPPLIIKKSPSAFYVYTYKNKWDPEKKRSYRASFKKVGTVTSGEKEGRIRWDDHF LA >gi|301349788|gb|ADCQ01000062.1| GENE 2 338 - 658 380 106 aa, chain - ## HITS:1 COG:no KEGG:PFLU0572 NR:ns ## KEGG: PFLU0572 # Name: psiF # Def: phosphate starvation-inducible protein precursor # Organism: P.fluorescens_SBW25 # Pathway: not_defined # 30 105 23 98 100 68 57.0 8e-11 MKRLVLIASLLGFAVCMNPAIAKDTSEHLTAQQNKMSYCSKEAAAKDLHGDKRKEFMKEC LSKKVDDGKKKLTQQQEKMVKCSKEAKEKALKGELRKKFMSDCLKN >gi|301349788|gb|ADCQ01000062.1| GENE 3 961 - 1443 291 160 aa, chain + ## HITS:1 COG:no KEGG:BpOF4_14635 NR:ns ## KEGG: BpOF4_14635 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 24 154 41 172 182 68 29.0 1e-10 MRERLTAAFDFKEPPQGLNPQPALWAVHNRTSEKYFLSKSISLYTVNNDEYVGLYGCTDK IKETDIEAVFEQFKRLISELPTDEKHMSSIFTAALISEEEIDLKIVETASAKKFHKDFWF SLRGWADLAFILVDLKNEKIYSNSFGKRTVRNFEFPKKSD >gi|301349788|gb|ADCQ01000062.1| GENE 4 1477 - 3141 2168 554 aa, chain + ## HITS:1 COG:PAB1554 KEGG:ns NR:ns ## COG: PAB1554 COG1966 # Protein_GI_number: 14521448 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Pyrococcus abyssi # 3 537 1 580 592 293 39.0 6e-79 MEMNGFTLLIGSAVIFLIAYVVYGSWLAKQWGIDPKRKTPAETQKDGIDYLPTKPAVLLG HHFSSIAGAGPIVGPITAAVFGWVPVTLWIIVGSVFFGGVHDYGSLVASLRHKGKSIGQI IEANIGERAKILFAIFAWITLLVVIAAFANIVAATFVANPSAGTSSLLFILLAVAFGLLV YRTGISLFLGTVLGLIGMAAAFYIGHIFPIVLSKDMWLLIMMGYIFVASIAPVWILLQPR DYLNSFLLYLMIIAAFLGICFYQPTMEISPFVGFDLGHGQWLFPVLFVTVACGAISGFHS LVSSGTSSKQLDNEKNAKLIGYGSMLIEGLLAICAIISVAYVAADKLPALLKAGGPVNAF SQGTATFMTALGLDFNLSKEFVALTISAFALTTLDTATRLGRFIFQELVTRPVESRNGGK EQPIAAFLGNRYVATAITIALAWYMSVGSYLTIWPIFGTANQMLAALSLLAIAAWLRKEN RKTFMVTIPMYFMFAVTFCSLGQLIYANLGKNWLIVGISAGLAVLSAALFIEAYRVFSND KGQIPSNLKAQNQE >gi|301349788|gb|ADCQ01000062.1| GENE 5 3584 - 4030 301 148 aa, chain - ## HITS:1 COG:no KEGG:Bpet0580 NR:ns ## KEGG: Bpet0580 # Name: not_defined # Def: hypothetical protein # Organism: B.petrii # Pathway: not_defined # 7 148 36 181 187 81 36.0 7e-15 MRAPGNDPITSFAYTTTQWAVGSVSKFIPRTPTIDWPSIFVCYLVAVIYQFFHWLMGSGA GGFFPFFFGSAVLVVYWAIELAMFAALLFCILSWVNQTSALYRTLSYLCYPFLAPIKKFI PVWKNIDFSAIVFFLVANIVLALLAPLT >gi|301349788|gb|ADCQ01000062.1| GENE 6 4214 - 4780 377 188 aa, chain - ## HITS:1 COG:RSc2806 KEGG:ns NR:ns ## COG: RSc2806 COG3023 # Protein_GI_number: 17547525 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Ralstonia solanacearum # 1 187 8 193 200 202 52.0 4e-52 MRIFPNGWCDEAAIRPSEHFNERPEGEEISLLVIHNISLPAGQFGTGDVDALFCGTLDCC KHPSYQDLEGLRVSSHFFIDRSGRLFQYVSCLDRAWHAGVSSYEGRENCNDFSIGVELEG TDSAPYEQAQYETLGRLTDALAEAYPIKYVTGHSMIAPLRKTDPGPAFDWLTYESLCKTG KPLCFPYV >gi|301349788|gb|ADCQ01000062.1| GENE 7 4780 - 5046 300 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858937|gb|EFL82021.1| ## NR: gi|302858937|gb|EFL82021.1| hypothetical protein HMPREF0189_02005 [Burkholderiales bacterium 1_1_47] # 1 88 1 88 88 176 100.0 3e-43 MSRIIFFVLIVAVIYFAWRSMRLKQIQLEKRLDKQEKANLAEHKNDMPGEKMVSCANCGL YVPISEAVYSNGKYYCCRQHAMKGPKAH >gi|301349788|gb|ADCQ01000062.1| GENE 8 5050 - 5883 839 277 aa, chain - ## HITS:1 COG:RSc2810 KEGG:ns NR:ns ## COG: RSc2810 COG4137 # Protein_GI_number: 17547529 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Ralstonia solanacearum # 36 274 62 299 303 128 35.0 9e-30 MTLNAIFYVFAAVLYLAAAFGIYKTLQEPEPSEKFWIRPLICAGLMIQAYLIYEALFLYG TPHFGMALALTITLFTCTFLLLLESFFSKIGAMLVFVLPLSAVSMLLPLLLPGSPLAPET ASGPFRLHLLLAILAYSVMTMALIQGLLLMAVHKRVRAKDFVTHEGAKHVNILDNMPSMM EMEKILFRLIWVGFIVLTAAILFGAVYSQELFGQAFRFDHKTVTTCMAWVIFGILLLGHH LRGWRGKFAALWTVIGFCVLMVSYIGVRFVMEVVPGA >gi|301349788|gb|ADCQ01000062.1| GENE 9 5951 - 7345 1835 464 aa, chain + ## HITS:1 COG:RSc2811 KEGG:ns NR:ns ## COG: RSc2811 COG0541 # Protein_GI_number: 17547530 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Ralstonia solanacearum # 1 446 1 460 476 535 67.0 1e-152 MLDSLTQRLTKVVKTIRGQARLTESNMQDMLREIRIALLEADVAIPVVKDLIARIKEKAL GTEVQTSLTPGQALVGIVHDELTKVIGGEDPENVREINLATQPPAIILLAGLQGAGKTTT AGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQANIDFFPSTPNEKPLDIARKAL EYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLNPIETFFVVDAMVGQDAVNTAKAF GEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPIKFMGVGEKLNGFQRFDPQAMAGRILG MGDIVSLVDEVRKNVDIEKAQKFAEKMRKGDDFTLEDFKDQLAQVKNLGSFSSLIEKLPA QFAQAAGQVDDEQAKKQLARTEAIINSMTPHERRKPEIIKASRKRRIAAGAGTTVQEVNR LLKQFEQSREMMKMMKKGGMGKMMRAFRSLSGRFPGMGGMGGGF >gi|301349788|gb|ADCQ01000062.1| GENE 10 7345 - 7950 320 201 aa, chain + ## HITS:1 COG:RSc0503 KEGG:ns NR:ns ## COG: RSc0503 COG0817 # Protein_GI_number: 17545222 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Ralstonia solanacearum # 6 190 1 178 181 125 39.0 3e-29 MSQKAVRILGIDPGLNHTGYGLVDFVPGHFTYVASGVLNVPAGELSDRLGFIFKSLSALI EEHHPNVASIEKTFLNTNAQSSMLLSHARGAAMCAVACHSILCKEISTREIKKSVTGYGA ADKDQVQQMVLRHLKLEDTRFSPDESDALATAICYGSSSILLGLVPTLGTKAGSSGTGVS RRGSSARRSRNEWTKRYEGKV >gi|301349788|gb|ADCQ01000062.1| GENE 11 7954 - 8523 638 189 aa, chain + ## HITS:1 COG:RSc0501 KEGG:ns NR:ns ## COG: RSc0501 COG0632 # Protein_GI_number: 17545220 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Ralstonia solanacearum # 1 187 1 192 193 185 53.0 5e-47 MIATIRGKILQKNPPQVVVECGGLGYEIDVPMSTFYNLPNIGEEVFLETVMIVREDAQLL YGFLTSQEKSVFRQLLKVSGIGPRISLAMLSSMSAEDIGNAIANNEIGLLTMVPGIGKKT AERLVLELKDKMVVTSAPTVSSVQTEVIQALVALGFSEREARGAAKNVPADADASEGIRL CLRQLAQKG >gi|301349788|gb|ADCQ01000062.1| GENE 12 8527 - 9567 1005 346 aa, chain + ## HITS:1 COG:HI0312 KEGG:ns NR:ns ## COG: HI0312 COG2255 # Protein_GI_number: 16272266 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Haemophilus influenzae # 1 332 1 332 335 450 67.0 1e-126 MADSNSILSSERKEKEEVIDKALRPTRLKDYAGQDGIREQLDLFITAARNRGEALDHVLL FGPPGLGKTTLANIIANELGVKLRQTSGPVLEKAGDLAAMLTSLEPHDVLFIDEIHRLSP VVEEILYPALEDFKLDIMIGEGPAARSIKIDLPHFTLVGATTRAGSLTKPLQDRFGIRAQ LQYYSPEDLTTIVLRSMHLLNMPADKGAAGEIARRSRGTPRIANRLLRRIRDFSEVRHQG QLSEQIAKDALTMLEVDPIGLDSLDCQFLLAIIEKFQGGPVGIENLASAVGEESDTLQDM VEPYLIKEGFVQRTPRGRVATPRAYSHFGLDRKHKDLGFLFDDDQY >gi|301349788|gb|ADCQ01000062.1| GENE 13 9551 - 10273 887 240 aa, chain + ## HITS:1 COG:no KEGG:PSPPH_0180 NR:ns ## KEGG: PSPPH_0180 # Name: not_defined # Def: hypothetical protein # Organism: P.syringae_phaseolicola # Pathway: not_defined # 24 238 31 246 736 80 24.0 7e-14 MTTNISSYNLSERQVQLDLSVLPYDFEENVKTLSEQARQAWNDVQDLEASACPDNKAQIT ITMHPSFASQIYFPEEFLLVMGLDCVGVRQVQCFPRDTSSCDTEDGEITVALVCVGKRQD IQAIPGKLEKVVSDTLVGKQIRTIESIEAVSIYDRLDIPNDYFEDHFLVGVYVTPGKTIE ESKEDFKNYAQKNDLEVHPNFLVDKDGVFYVLLRGARYKLDAIGDYAYTFCVRVPPLKKA >gi|301349788|gb|ADCQ01000062.1| GENE 14 10331 - 13897 1542 1188 aa, chain + ## HITS:1 COG:VC2322 KEGG:ns NR:ns ## COG: VC2322 COG1330 # Protein_GI_number: 15642320 # Func_class: L Replication, recombination and repair # Function: Exonuclease V gamma subunit # Organism: Vibrio cholerae # 1 839 1 801 1148 161 23.0 7e-39 MISTFYSNSFEVLRTVLATKIGFNLEDLRNRNASFFEQIEVIVPTTMVGDNLNRFFADHF GATPGIEFSNVASWMFKVLGQSLSNAETSQVMDWTFYEILRQKQNKKAFPEEEKRLYEYI QTLNPVGVLEFARHLNTVFITYGSYRFDWLQQWALEKFKFNHKVHPLPVPNAKAEEERLK KNADFLWQKRLWQELIEQTGAESEGKIFGWLENTIERIRKNKPVENSLPIHLFLPFSIPP NLLPLIRAYEDSPAELNLYILNPCAEYWFESVPKAQFDWSENFKVDNSCLNYLLTNAAST RAAIDRLDSFLFSEEEASAIETDISDKDKQNRQKAFVKQPGSREFVTSEKTFDHSEEEIK TKVSAETASAYLEYPSKSFLHSFQNSILRMDSTLLPIEPDEKDVSLRILKAPSFVREVEA TIDILQNWLTDKKRGLKPSDVLVVVPDIEKAAPIIEGVMASLPKDLYIPWKIIGLSEEKQ NALADAFVGLGKLLMSDFSAREFFDWLEKLPVQQQWDLSLDDISVIQTWLYSAGYSVGID HEQLAALNFTDEDTSFQDAMERLSLGFFLDEASPLPFKSVLPIRGDEEAGFNVVSDGSGR LLQALSQLYLNLADQRRELLASEFALPAEAWREALLGMKERFFGNNCDPEESYNFSEIIE TVCKGMAAAFGGTEKTVSFDVVLSELRSELSKTKRDVPSSGTMTFASISLARGIPYKVIC CLGFDEKSGFPGTPKFEEFDLTKDHRRRGDRDARKDNNAVFLDTLLSARENLLISYTIGT KPQSENNPSLVIDNFKNYFLSHAMSVGMEDGTAQEKADELWKSIVTKVPLNRFSMRNFLE EAKSLDKRENNLFWKSPRKDVLDSIEHAYRNPGAKEPMFANTEIPAEKLPKTMQHPVLRE LQVNFLIKFLTSYNEWTATLLKLESSDFEADERMIVPSKDDKLMHSEVSRKFLSLLENNF SDQEALNLLNLNPKYGIESVRRAVLSFETSEVADAHAARKQFEETETLKPLSAGLDYRVP TAVSSFVNRLTDKTDLFLWKTEDESLRVKLGVFCSASEQNREVLRQIIWTEAGEPYDLLI FNESSDTDHFVISYSSIIQNHGGEPLKAFLRLFECHCKHALGMNASDDALLWQGVSEESV RKAADLSKALKEELSDYYKLLKGDGRKKDIYLSEAFEALIEFIQKLKP >gi|301349788|gb|ADCQ01000062.1| GENE 15 13909 - 17334 1958 1141 aa, chain + ## HITS:1 COG:VC2320 KEGG:ns NR:ns ## COG: VC2320 COG1074 # Protein_GI_number: 15642318 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Vibrio cholerae # 236 1140 344 1202 1208 261 27.0 8e-69 MLYKEFDAATTPIEGRMLLEASAGTGKTYSLMRVLLRLLVEKGIELDRILVVTFTNAATD ELSSRLRSNLTELIEQIRLNKSGSFNDLLDSWGEKKYSQDIILEKLQTALNKIDDAAIFT IHGFCQRILQDFVFSSKGNYDFEIGDDSNAKDKALSTFLRTNLPKAYPGYPTEQLSLARD IPWEDILTTAAGLSRSKPLTRQMKLMKDANQKPEDETTRFFETFIDQATKLYEENKKDER LFTFDDLLIEAEERIVKDPEFTKAIQNLYGAALIDEFQDTDPIQYSIFKHLFLEDPENSK PVIFVGDPKQSIYRFRNASLETYLLAKNEINNPYQLVKNYRSTPGIIAGVNAYFNPEGKG SRGGFLNQALSYSPVKFNKKKLPLLLEKDGKVEPLSSFAFWSNADTKALSNAETLRDMEA IAIAEEIESLLKENVLYEGRRLRPSDIAILVAKRFHADKVIEELRRRGIRTLRSSNENVL CSKEAHELKSVLEAMYDPRDTRLVAAAQATRIFGDSLNDLLNNDAASAQARLLLENSAKI YEKSGIIAAVSNLFAGAKTEERLLQYGGERALTNYQHILELLHQQHNTIDSLQGLLRWLK QEQKKSNDSYTLRRETDSDVVRVETIHSSKGLQYSVVYYLDRPISFSKGQKFRDDATGVI TFYETEQKAPDDFIEKSYEESMRLLYVAMTRATARVVLPYFFKKTKNGAPHGSVGGKNPL AQAISGETSGGLAIIGGLNRLREALSPKEASAREVRKALLDGISEYNKNSAHPLMLSEKA LNAYIPFEIRFDFEPGKYGDSEVSFRQPPEHLDLRAGRGEKQNRSWISSSFTSLLRTMEA QDSAVITDESEALESEETVAESKEEDVLEVLKGTQSAAEFGTKVHELLEKIFDKNFHNWK NRVYKFLDDRFKGYVAPETEERKAEIETKTEEFFENLFEAKILPSAPGFHLSQLFKNLKD CRPELKFMLSVGAPIKGRERLTASLLAETLTAFDSRYKDFHLSELDMRGYLTGSIDLAFA ADGKYWVIDWKTNKIDYRNNTPELYTPEAVNALMKNNHYELQLALYLVALKRMLEVRLNL PEGTGYKAIGGAVYCFLRGIDRNARGTYFERPKDALIECLDDFLKNGFSRELLESRAKGA V >gi|301349788|gb|ADCQ01000062.1| GENE 16 17336 - 19282 1121 648 aa, chain + ## HITS:1 COG:VC2319 KEGG:ns NR:ns ## COG: VC2319 COG0507 # Protein_GI_number: 15642317 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Vibrio cholerae # 144 642 208 706 706 170 30.0 6e-42 MISQNQNSFENLGTILLDLLTRRGKTITEELRDALAFFMLHLGQAEHLGGLCAELDATPQ NKKYAELLREAELLTDSSNKIADEPNNLSVAPTPFLLDESEPKKLRIYSRRNFCSESRLA AGIHGMCSTSASDVNEVKEALAQLEQTLKNARENGDKKAYSLNPLQLEAAELAVSEKFSV ICGGPGTGKTTTVVKFIEAFLEIHPKGIIQMCAPTGKATSRLLESVKNQADAGPSSAPYY PAVRKALAEDRLTSLTIHKLLVTDLSNGKRPSADNPIEADLLIVDESSMIDSALALKLIR SIDPTKTQTVFLGDKHQLAAVGPGSVFADISDNSGVLKGYIVELKESIRFNDKSAIGRLA QRMLAFEEGREAGISDFISEVEYTDDQPFEGFKDTGVFFKSAGRNLPLQAQKWLEEKLDS YCNAVENLNLTLTLNDKNEVDSRSANFENLPNDVQQALKDVWNELSTFRPLCAQREGPTG VNAVNDYCEDFVKTAFIVPSADDMYNGKVIIVRQNDSGLGVANGDVAVIFGLKTADSDKP MWYAFIGDLKKIVPAQLLPKYDTAFAITIHQSQGSGFRNVAIFLPTLSAGSDAASLCTRE LLYTGITRSEKTCQIFGAKDALDMSLKTVTQRSGGLPQRLKERFSEQG >gi|301349788|gb|ADCQ01000062.1| GENE 17 19476 - 19820 121 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858947|gb|EFL82031.1| ## NR: gi|302858947|gb|EFL82031.1| toxin-antitoxin system, toxin component, Fic family [Burkholderiales bacterium 1_1_47] # 1 114 1 114 114 224 100.0 2e-57 MSTPLDIDAVVLINEALTGNRCSEERKQRVGGCLSSYSYYDTVREQITSIVVSLLKGHFF QDGNKRTALAIYLDLCQNNGIKFLSDQDRLGDVLIDIAANQRGITENTRLLFPD >gi|301349788|gb|ADCQ01000062.1| GENE 18 20291 - 22102 556 603 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 339 600 11 269 329 218 44 1e-55 MLRISNMVTEILTSEDTVRVVDGLSLTLNRGEICALVGESGCGKSMTAFSLLRLLPSSGR VSSGVVTVDGTEIMGLPEAAMRNIRSFKISLIFQEPATSLNPVMTVGDQIVETILLHTPL RGEEARAKALDWLKKVGIPEPERRMKSFPFELSGGQKQRVMIAIALAAEPNYLIADEPTT ALDVSVQAQILDLLKHLKETENIGILLITHDLAVVAQVAARVGLMYAGELVEEASAREFF SKPLHPYARNLLKALPEGKQKSQMLEAIPGMVPRLNREFHGCRFAERCKKARPECSQHKV VLQEIGDRKVRCLFPENDPVELPRSDVVVEREQKDVPRILEVKNYSVWFPIRGGFLRPTE YAKAVNNVSFDVRRGLTTALIGESGSGKTTVARGILQLLRLQAKITGSALLNGKDLGSLN GPDLRQARVDMQVIFQDPFSSLNPRMRVKEILLEGLESLHPDIPASEALGRIEDVIGLCG LRSDSLNRYPHEFSGGQRQRLAIARALVVEPKLLICDEPTSALDVSVQAQILNLLNEIQR SRDISYLFITHNFGVVRYLADEVIVMKSGEVVEAGSAAEILNRPKDPYTCRLLEAVPNFD SLK >gi|301349788|gb|ADCQ01000062.1| GENE 19 22102 - 23517 1151 471 aa, chain - ## HITS:1 COG:PAB1873 KEGG:ns NR:ns ## COG: PAB1873 COG1173 # Protein_GI_number: 14520952 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Pyrococcus abyssi # 222 462 115 365 387 132 33.0 1e-30 MMPKFVLLPTDIVIVVLLAALTFYLIHVARSEELKARWRYVVSSGASLCSLSLLCFFLLL SVVDSVHFRPVIDVQAGRPIYDVKAYSLLDKALGKASSAEEKSYSMPLATQTFEKISRFE DGKPVRDYEPLKAGGAHLKNNADWAEDVIVKSACGLGAGLVLSALLWFLTVGLIARYKDR SFKGEVRTLFKRRDEVPYEAVLTTCSVLIVLGCLIGALWPYYHVMGTDQTGNDVLYQAFK SVRTALVIGTLATLTTLPFAVVLGICAGFFKGWVDDLIQYLYTTLSSIPSVLLIAASVLM IQVFIDSHPGMYATGIERADLRLFMLSIIIGLTGWATLARLLRAETLKISQLDYIQAARA FGLGPFKIMKRHVLPNVIHIILIVAVLDFSGIVLYEAVLSYVGVGVDPTTHSFGSMINAG RLELSRTPVVWWNLCAAFTFMLTLVLSANLFASAVREAFDPRLVLKIGRKK >gi|301349788|gb|ADCQ01000062.1| GENE 20 23514 - 24491 889 325 aa, chain - ## HITS:1 COG:CAC0177 KEGG:ns NR:ns ## COG: CAC0177 COG0601 # Protein_GI_number: 15893470 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Clostridium acetobutylicum # 1 325 1 321 322 129 27.0 1e-29 MIRYLLRRIGYGLLILIGVNLLTFMLFFTVNTPDDMARLNIGGKRVTAEAIQNWKEEHGY DKPLLWNERAEGSDKLTDTIFWQHSARLMVGDLGASDAGRDIAYEIKNRMWPSVALAFPT FLLGVFVIVVFSLGLVFFRHTKLEIGGVVFAIVMMSVSSLFYIIFGQWLFSKVLRLVPIS GFETGTAMISFLILPIAIGVFSRIGGDALLYRSMFLEEINKDYVRTARAKGLSETAVLFK HVLRNASLPILTSTVAVLPMLFLGSLVMESFFGIPGLGSFTIDAINAQDFAIVRTMVFVG TVLYVIGLILTDVAYTIADPRIRLK >gi|301349788|gb|ADCQ01000062.1| GENE 21 24488 - 26755 2071 755 aa, chain - ## HITS:1 COG:FN0396 KEGG:ns NR:ns ## COG: FN0396 COG0747 # Protein_GI_number: 19703738 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Fusobacterium nucleatum # 246 688 138 496 511 95 25.0 4e-19 MKIKVGYGATYGRLLKLSVAVFAVFALTSCKEIPNSVHTEKELASNTLYTPFSGRSPKHL DPTSSYSSDETPYTYSIYEPLYQYHFLERPYRLIPRSAAEVVKPVYLDKDGKALPETASA EKIALSVYEIPIKKGILFAPHPAFAKNEKGEYINHALAPEVIDELHNPMDLPQKGTRELT AEDFVYSIKRMANPRIIAPVYGTMVNYLPGLKDFAVQVRTEDKRLRADLKPSDRDLPFLD LRKFELKGVSAPDKYTLRLEVKGKYPQFPNWLAMTFFAPVPWEAEAFYAQKGMAKNNLSL NYWPVGTGPYMLVESIENRKHVMERNPNFRKTELYPCAGEPSDEAKGFLKDCGKPLPFID RIEITAEKESVPLRTKFLQGYYDSPQIERLDNGQGFLIGMADSAEKEKEYKEKKLQFPQT IEAQNTYFGFNWMDPVVGEGKTPEERERNKKLRQAISIAMDWEEYIQIFEKGLASPAHGP LPPGLFGYREDGAAAFNPIVYEKTEDGLVRRKSIEEAKKLLAEAGYPGGRDAKTGEPLVL NLDFQAAASPSTKAVLDWYQKQFAKIGIQLDIRGTDYNRFQDKVISGNHQLFLWGWLADY PDAENFLFLLYGPNAKSKTGGSGENASNYQNPKYDELFSRMRYMDEGPDKAEAINELIKI VQEDAPWTFGYFPTSSAAFHQWVHNGKLTQVVRNHIQYLRLDPETRVKAIKEWNKPIYWP LLVFVLLSALVIIPAVALHRKRERMTARTTEEDVK >gi|301349788|gb|ADCQ01000062.1| GENE 22 27030 - 27446 438 138 aa, chain + ## HITS:1 COG:RSc0731 KEGG:ns NR:ns ## COG: RSc0731 COG0824 # Protein_GI_number: 17545450 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Ralstonia solanacearum # 6 133 4 131 134 134 52.0 5e-32 MEKHYFDWPVRVYYEDTDCARVVYYANYFRFMERARTEWLRALGWSQERLYSELGVVFVV AEAKAKYKKPARLDDELVVRSTVTACGRTSFEFHQEILRGDEVLNVGDVRCGTLDAHTFR PVAMPEPISEQLKKLLTH >gi|301349788|gb|ADCQ01000062.1| GENE 23 27472 - 28155 892 227 aa, chain + ## HITS:1 COG:RSc0732 KEGG:ns NR:ns ## COG: RSc0732 COG0811 # Protein_GI_number: 17545451 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Ralstonia solanacearum # 1 226 4 228 230 233 56.0 2e-61 MEASADLSIITLVAHASAVVQIVLAILLIFSLVSWTIIFQKWFQMSRARREARNFDKRFW GGADLNKLYESATERRSSIGPQEGIFYSGMTEFLRSRASNLEARAGTFGVIDGVSRAMRA RYQRELDILESGLSVLATIGSVSPYIGLFGTVWGIMDAFTGLGNLESASLAVVAPGIAEA LVATAIGLFAAIPAVIGYNRFAYSLDRLSSQYESFMQEFQNILGRQA >gi|301349788|gb|ADCQ01000062.1| GENE 24 28165 - 28587 459 140 aa, chain + ## HITS:1 COG:RSc0733 KEGG:ns NR:ns ## COG: RSc0733 COG0848 # Protein_GI_number: 17545452 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Ralstonia solanacearum # 12 133 16 142 144 71 41.0 4e-13 MARNGKRRLLAEMNVVPYIDVMLVLVVILMVAAPYVNPSIVDLPKVNKAARTPDKVVEVI ISPDGKLQIRDTAKKLTPVDFPQLVSTVESMQTDGNQVPVVIAADKTVAYEKVIDVMRNL QKANITRIGLSLQLEGSGAK >gi|301349788|gb|ADCQ01000062.1| GENE 25 28587 - 29786 1244 399 aa, chain + ## HITS:1 COG:NMA0905 KEGG:ns NR:ns ## COG: NMA0905 COG3468 # Protein_GI_number: 15793871 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis Z2491 # 75 277 963 1150 1773 71 28.0 3e-12 MDDLSPNQANRLSGAQGYWGTAFVLALIAHGLLFVLLFVSMQWRSEPTGPVYAELWNGDM PAAEAPAETQPEPQPEPEPEPQPEPEPQPEPQPEPEPAPEPPAPEEPQQQLPPPPPPIAQ TDLDRQANLLEDPDIVQERLDREKKKQEEEKQRILERERQLQEAKRAEEQRKAEEARQAE LRRQEEERRIEEQKRQEELKKQEEQKRLAEEKRKAEEKAEAERKAKQEELKKQAQERERK IAEEKAQREKALAEKRKAQEELNRQRAQEQANAVRRKEMLSRLTGQSGSAMGSGSGAMTN FQQAQYNNRIVACIRPHITFNTPAGAKRGMYVAKFDVRLLKNGQKAVPPKMISSSGLKAF DTAVEKAILMCNPFPKPPVGDIPSSITLTFDPVDDANGR >gi|301349788|gb|ADCQ01000062.1| GENE 26 29804 - 31291 1669 495 aa, chain + ## HITS:1 COG:RSc2451 KEGG:ns NR:ns ## COG: RSc2451 COG3264 # Protein_GI_number: 17547170 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Ralstonia solanacearum # 107 478 67 430 447 193 36.0 5e-49 MSTSAAASAEIAKVAQTAVTTEELLSGDSNILDQLLLMFEKGLNQPIIYWQLASILGSLF LAWLLGKYIRMRIIKHLAANEIIESDEIKAEEGEAPVKPEHRESAFWAKVRRGIETLILR LSFPLLGMFFIAVSTFTVRLFGLLPKKALPLESIAWLILGAYVVIRTVVFLLHSLSRKYN SSLDNFLTFSIWGGVALQIVGVLPKCVEFMQTTKIPLGSTNATVWSVFLSGFSIALALFI AKWIGQFFEKWINSLPTMESNVRVVIIRVVKVVLVTIAILIGLASVGIDITVLGVFGGAI GVGLGFGLQKIASNYVSGFIILLDKSIKIGDLVNVSGVEGIVTDIKTRYTAVKAYDGSVT IIPNENFVTSSVRNTSYLLGPGRATVMMSVDYSSNIDEVIELMTDIVRKQPRVLINPAPY TILTNFGADGIELTSYFWVPDPEKGTATLRSNIGRAMFREFNKRKINIPFQQRDLRIVSM PDVVCKVENDVPVRG >gi|301349788|gb|ADCQ01000062.1| GENE 27 31413 - 32063 342 216 aa, chain + ## HITS:1 COG:CAC0198 KEGG:ns NR:ns ## COG: CAC0198 COG2364 # Protein_GI_number: 15893491 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 5 204 7 205 227 125 37.0 7e-29 MLRKLGPWFMFVAALFVMSLGIALVTRGNLGTTPISSLPLVSSYATNLTFGETTFLINLL FVAAQWVLLRRSINKVLLLAQIPITLAFSYFIDTSMKFTEFLSSDVYWKCFAVSMLGNVV LGLGVALEVFSGAAALPGEGLVLAVSTVLHKPFSSVKIANDVILVLLALLLSYCVFHGIR GLREGTVISALCVGVFVKFWLSGLTKLFKRAPADTE >gi|301349788|gb|ADCQ01000062.1| GENE 28 32106 - 32402 128 98 aa, chain - ## HITS:1 COG:RSp0076 KEGG:ns NR:ns ## COG: RSp0076 COG3636 # Protein_GI_number: 17548297 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Ralstonia solanacearum # 16 95 17 98 99 63 39.0 1e-10 MSTKLSKEFDIQDYLINTEKDSKAFFKACIEEDPGDGSLARRALGELAKARGVAQLAKET GLSRQTLYEAFRPEGSPKSETIFRISEALKLSTIPDRV >gi|301349788|gb|ADCQ01000062.1| GENE 29 32874 - 33320 139 148 aa, chain + ## HITS:1 COG:no KEGG:ECSP_0455 NR:ns ## KEGG: ECSP_0455 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 8 148 4 142 149 152 54.0 4e-36 MMQRRKIRPWSKLQKEVYLLVDPKLDFQIHCVAYRMGSQYGSTDLPRYWITLGKETIFDY PKQFIHSAGPDENSRIAYEALSIYPYSSETSEISNMLREYIDTPLSEIMTKKFEGDHWGL TDILRAADRQIGQRRLSELAEIVSNPAA >gi|301349788|gb|ADCQ01000062.1| GENE 30 33482 - 35230 2193 582 aa, chain - ## HITS:1 COG:RSc2816 KEGG:ns NR:ns ## COG: RSc2816 COG0442 # Protein_GI_number: 17547535 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Ralstonia solanacearum # 1 560 1 553 574 746 67.0 0 MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE MDRAGAIELLMPIVQPAELWQETGRWQKYGAELLRFKDRHDRDFVLQPTSEEVVTDIARQ EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFDA YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFCPDSEYAANIELAEAPC LIEKRAEATETMEKVPTPGRDKCELVVELLNKPLTASVKSIVLAVDQQDEKGNPLPAKIV LLLLRGDHTLNEIKAEKLEALKGGFRFATDKEIEDTFGSKPGYLGPVGIPKDVTIVADTT VANMSDFIVGANEEGYHIRGVNWGRDLREPDVVADIRNVVEGDVSPDGKGTLKMQRGIEV GHVFFLGDKYSAPMNATYLDENGKPQLLQMGCYGIGISRLLGAAIEQGHDDKGIIWPDSI APFTVVICPVGYDKSEEVQKASNELYGRLREAGIDVILDDRGLRPGVMFADWELIGVPHR VTIGDRGLKNGEVEYAHRGDLQNENVPVSEIADKLIAKIKVR >gi|301349788|gb|ADCQ01000062.1| GENE 31 35349 - 35894 547 181 aa, chain + ## HITS:1 COG:RSc2817 KEGG:ns NR:ns ## COG: RSc2817 COG0494 # Protein_GI_number: 17547536 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Ralstonia solanacearum # 1 164 1 162 238 218 62.0 7e-57 MLDQHGYRPNVGIILTNPLKQVFWGKRLGQHSWQFPQGGINRGESPREAMFRELWEELGL FENQVRIISRTEDWLRYDVPDRWIRRDLRGIYKGQKQIWFLLEFLGKNKDINLKATNHPE FEAWKWNDYWVPLSQVIDFKRGVYKEALKELAPALFTDKKHLVPPAGWEKAEGPGHFRLY K >gi|301349788|gb|ADCQ01000062.1| GENE 32 35909 - 37039 1447 376 aa, chain - ## HITS:1 COG:RSc2819 KEGG:ns NR:ns ## COG: RSc2819 COG0263 # Protein_GI_number: 17547538 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Ralstonia solanacearum # 10 374 9 374 374 419 65.0 1e-117 MEENLRIWNDAKRIVVKVGSSLVTNEGHGVDTEAIARWTAQIAKLQEMGKQVVWVSSGAV AEGMARLGWTKRPKKMHELQAAAAVGQMGIVEAYEKSFERYDIRTAQILLTHADLADRER YLNARQTLTTLLDLKVVPIINENDTVVTNEIKVGDNDTLGALVTNLIDADVLVILTDQIG LFTADPRSNPEAKLVEVGEAGDPIYEAMAGGAGSSIGKGGMQTKVLAAKRAARSGASTVI ASGRIPDVLVRLAQGESIGTLLKTDRKPMSARSQWMADHLQLKGKLVIDEGAVEAIRKGK SLLPVGVKAVIGDFLRGEIIQVVDQNDKEICRGMINYGSDESRRIMGLHSDEVVEELGYL EQRELIHQDNMVVMNK >gi|301349788|gb|ADCQ01000062.1| GENE 33 37250 - 38362 893 370 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 [Roseobacter sp. AzwK-3b] # 1 347 1 341 345 348 53 8e-95 MKFVDEAKIEVFAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSIYAVADRNLNTLIDYR YTRKFQAKNGENGRGSDCYGRGAPDIELRVPVGTVITDLDTGETIADLDKNGEKALLAKG GKGGLGNLHFKTSTNRAPRQCTPGEPGQERTLKLELRVLADVGLLGLPNAGKSTLISAVS NAKPRIADYPFTTLHPHLGVVRAGPESSFVIADIPGLIEGASEGAGLGHQFLRHLSRTSL LLHVIDVAPLDTEEDPISAARAIVEELRKFDPALAEKPRWVVLNKMDLVPEEDRAAVVNK YRDAFGTDVPMFAISAVTREGTEALVKAIAEDIHEQRRQLIKESEPDVRFDEDEEVFPPE GVEPEESEQK >gi|301349788|gb|ADCQ01000062.1| GENE 34 38481 - 38741 316 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|88798155|ref|ZP_01113741.1| 50S ribosomal protein L27 [Reinekea sp. MED297] # 1 83 1 83 84 126 71 7e-28 MAHKKGGGSTRNGRDSNAQRLGVKVFGSEMIQPGAIIVRQRGTTFHAGENVGMGRDHTLF AKVAGKVEFVVHGRLNRHYVNVVPVA >gi|301349788|gb|ADCQ01000062.1| GENE 35 38770 - 39081 345 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|56475877|ref|YP_157466.1| 50S ribosomal protein L21 [Aromatoleum aromaticum EbN1] # 1 103 1 103 103 137 62 3e-31 MYAIIKTGGKQYTVAVGDKVKVETLPGDVGSQIKLVEVLAVKNDEGLKLGNPTIPGAFVT ATVLSEGRHEKVRIFKFRRRKHSMKSAGHRQNYTELKIDEISA >gi|301349788|gb|ADCQ01000062.1| GENE 36 39352 - 40332 902 326 aa, chain + ## HITS:1 COG:STM3305 KEGG:ns NR:ns ## COG: STM3305 COG0142 # Protein_GI_number: 16766600 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Salmonella typhimurium LT2 # 8 326 3 323 323 291 43.0 1e-78 MSQVAAAVQRIIAPISEDLLAVDREVIDDLQSDIPLIKKISDYIVTAGGKRMRPIVLMLI ARALGYQGKEHIFLATMIEYVHTASLLHDDVVDESDLRRGKPTAGFKWGNAAAILTGDFM YSRAFQLMVRTQNLRICEIVAGAVNRVSEGEVIQLLNIHDTTLDEARYFDVIERKTGVLF EAAARMASVVAGASKEVEDKMAEYALCLGRAFQIIDDVLDYTGTKDNIGKNLGTDLREGK MTMPLIYALRHCSEEDAKIIRTAVSSNDPDLESVTRVILASGAIDACIEAAKKEVSRGID ALNCLPTSAFKNSLIELLSLTVERDR >gi|301349788|gb|ADCQ01000062.1| GENE 37 41180 - 42406 476 408 aa, chain - ## HITS:1 COG:MJECL41 KEGG:ns NR:ns ## COG: MJECL41 COG0732 # Protein_GI_number: 10954528 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Methanococcus jannaschii # 5 407 29 432 432 153 28.0 7e-37 MKTYKLTDIAEVIVGGTPKTSVAEYWNGDIPWLSVKDFNKVTRYVLTTEKKISMEGLQKS STNLLKKDDIIISARGTVGALAMIKTPMAFNQSCYGIRVNAEKVSPAYLFYSLKTKIKAL KAASHGSVFDTITLDTLNGLDFELPSLNEQLCASNFLSLLDEKIELNNSINRNLDALARQ LYDYWFVQFDFPDESGRPYRTSGGKMVWNNRLKRNIPEHWEVVNIFDSVDVQYGFPFSTD SFVDQDSDVPVVRIRDILNGTVSAYSTEQVGEKYRLSTGDLILGMDGNFHMNLWCDNKSF LNQRCVRFRQKDNSAVSTLQVMYEIAPYIRAKEQVAKGSTVGHLSDKDLKDLWIMTPLNN KYFSASSTLNHISNLIIENRREISELTKLRDDLLPILLNGQVSIRALR >gi|301349788|gb|ADCQ01000062.1| GENE 38 42432 - 43718 431 428 aa, chain - ## HITS:1 COG:jhp0415 KEGG:ns NR:ns ## COG: jhp0415 COG0286 # Protein_GI_number: 15611483 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Helicobacter pylori J99 # 4 426 121 542 543 452 54.0 1e-127 MTDIAFKNADIFSTQTTANTKIPLFEPLTVFVTDPSQRAAFARALVDKLVNFSFEEAFGQ SYDFFSHIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDATNLHSIECYDPSAGT GTLLMALAHQIGEDRCTIFSQDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVSPYHKS DDGKELRQFDFVVSNPPFKMDFSDTREKIAAMPVRFWAGVPKVPKKKKESMAIYTCFIQH VLNSLKDNGRGAIVVPTGFITAKSGIENRILKKLVDDKLIYGCVSMPSNVFANTGTNVSV LFFDKSGSSEKVILIDASKLGEEYKDSNGLKKVRLNPVEVNKIITTFQKRLNVEDFSVAV DFNEIKEKGYSLSAGQYFEIKIEYEDISEEEFKNRMKEYESNLTDLFNKSNDLQKKILES LKNLHFSS >gi|301349788|gb|ADCQ01000062.1| GENE 39 44075 - 47275 681 1066 aa, chain - ## HITS:1 COG:HP0464 KEGG:ns NR:ns ## COG: HP0464 COG0610 # Protein_GI_number: 15645092 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Helicobacter pylori 26695 # 5 1059 3 1043 1055 550 35.0 1e-156 MSATFTEATRVQIPAMVHLSRLGYSYFGKISEGDAGTIYDPDTNILLEEFRQQFSRLNPE RGDEWKQVIQNIKKELNDDDLGRGFYERLISLSPYKLIDFEHPENNSFAFTAEFTCKNGE DEFRPDITLFVNGLPLCFVEVKKPNNHGGMTAESTRMNEERFPNKKFRRFINITQLMIFS NNMEYDALGGIVPVQGAFYCTGGRNRVPFNCFREDNPNFLRDYPYRPLDSNVEREILRDF NCQVIHTNPEYQNNLNTLTPTNRILTSMCSPRRLLFILKYGIAYVKMEKEVDGKIESLDQ KHIMRYQQMFASLAIRNKLANGVQSGVVWHTQGSGKTALSYYLVKVLSDHYAKLNKVAKF YFIVDRLDLLEQASQEFESRGLVVKTANSKKELMDQFRNNQALEGVSGRAEITVVNIQRF AEDKEKVQLTDYATNLQRVFILDEAHRGYKPGGCFLANLFEADPSSVKIALTGTPLLKEE RASCKVFGDYLHTYYYDKSVADGYTLKIIREEIETSYKEKLSEIYNSLNTLVQKRELKKS DIIEHDNYVRELGRYISTDLKKFRDIQGDQTLGGMVICETSMQAKKLYEFFNEEWEKSQP KTVKLKLPDGTEVSGLQLNESSKAPLKAGLILHDSDDKETRRQLIKDFKKNLTVDVLIVF NMLLTGFDAPRLKRLYLGRKLKDHNLLQAITRVNRPYKEMHYGFLIDFADIKKNFEETNE AYLKELSRFNIEDGTESLRGESNNVIVSKDEVVEKLKKVRQALFSYSSDNLETFSTEISQ ITEKKELIELRHTLEDAKNIANLVRTFGDEETKKGFAKLEITQLPRLLSEVNNRISIINQ EEAFKRSEETKIRINEAMAGIEFNFSLISSDELKMISGGIELKEKWKQTISQFTNNLDPE DPEYISLREAFLQRFREKGFVVDTLAKFDEETKALDDLLKRLKEIQRRDKALISKYQGDV KFARVHKRIREENSKRKEKGKEPILSFFEENIRDALVCLKGNIDSVVYDRNDILKKDAYF KRTVMHLISNTLKDFEEITPQMGDFTFLQSKITQQYLNQYNSIYPS >gi|301349788|gb|ADCQ01000062.1| GENE 40 47438 - 47653 128 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGTVFLLPWRHQIHKTYEAESIDNFTLWRRLSLIRMIVCLEVLKLLATSETEIPQSRLAI TVSICSSVREK >gi|301349788|gb|ADCQ01000062.1| GENE 41 48483 - 49541 470 352 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858971|gb|EFL82055.1| ## NR: gi|302858971|gb|EFL82055.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 352 134 485 485 597 100.0 1e-169 MQGIMREVPLAENSNPMASLLNVFKNNKKEDKKIRLEGALIEFHPYKGTSNKSDATVFTG EYSRVGGSSKGIIASKTSPVVLWQNRKQGYIFQVQDLSKIFPTDVPSKLIASRTMISSYD NKPGGVGAIRLMNGVIVPVVWHGENPERVNVAPAYFKIFSKELYEAQEAADSGRRGAQVA AEVFSNYVQKNCANKKVELPNGLSKKQYFEFCSYLGAQAKKVRAAEADYQKELARAKKKA DKLLAENTEKFRQEQEHQAKMAVYQSNVRAAQAQANAANRMANAAETAAFNQQMAQLANQ ANAFAAQQLNMVNSTRMMTPVTQISTPRIERKTNTYMIHQSTPNMVQIRQIN >gi|301349788|gb|ADCQ01000062.1| GENE 42 50266 - 50700 265 144 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858972|gb|EFL82056.1| ## NR: gi|302858972|gb|EFL82056.1| hypothetical protein HMPREF0189_02040 [Burkholderiales bacterium 1_1_47] # 1 144 67 210 210 301 99.0 9e-81 MARYDLVYISCHGDKGEICIEEEPKKSPIKEEPGEDKNLWVGPVSLIQLAEAYPTFFEGK CVHFSSCRTLADEIQAQEFLNITQAKMVSGYCSTVDAMQCAIADLILFNGIFSYQRVSTL NSETGKFRNKYGKILDELKFKMYV >gi|301349788|gb|ADCQ01000062.1| GENE 43 51195 - 52361 924 388 aa, chain - ## HITS:1 COG:yceE KEGG:ns NR:ns ## COG: yceE COG0477 # Protein_GI_number: 16129016 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 3 388 12 401 408 198 33.0 2e-50 MPWVVTLTILVASAFLMDMSFTMITPFLPVYLSSELGAKASDVDMWSGAVFAVTFFVSGL LGPVWGVLADRKSRKLMALRASIGLTISYALCGIVQTPMQLFAARFFQGLCAGLYPALLA LLAASIPARKTGLSMGLMQGGMTVGAVVGPFVGGVLADYFGMRESFFVASIALGLISLLI GFCIKEKPRTIKVTSRNWFDWSVLRQPAIFKMLIACAVIHASLFSAQPILPLYIAQLQGS MDNIMMLSGTIFSVCAISIMIASPILGAAGQKFGFLKVLSCSLFFAGLLISAQVLGRTPF EFGVWRFIAGFAIAGLIPLVNSIISTECPPDKKGEVFGFNFLTGHAGMALGPFAAGALSG WFGYQAVIVASGLILFPLIVYLNYGRKK >gi|301349788|gb|ADCQ01000062.1| GENE 44 52517 - 53515 313 332 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 [Haemophilus parasuis 29755] # 24 325 31 339 346 125 27 1e-27 MKLVAKFAASLAALGLSFNVLAAELNVYASMPEKYASQVLEQFTKDTGIKVNFLRLSSGE VLSRLQAEKNNPQVDVLLGGPADYLEVAKNEGLTAPYKPKGSDFIPAEFKDPQNYWTGIG IMPLAFITNNNFLKKNNLKAPTSWQDFLKPEYKEGLILADARTSGTATERLFSLERVFGR QGSIDFQKKLHKNVQMYTKSGAWPALRVGDGLAAAAMVYLPDALDIVQLGYPVTISYPKE GVTFGIEVVSLVNGAKHPKEAKEFLDWATSPKLAEFLIKNKIRYVPTRTDVKVDDPVLDL KNIHMLSVPLSEKGRLREQLTKDWIDQVLQAK >gi|301349788|gb|ADCQ01000062.1| GENE 45 53591 - 54193 382 200 aa, chain + ## HITS:1 COG:ECs0107 KEGG:ns NR:ns ## COG: ECs0107 COG0237 # Protein_GI_number: 15829361 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Escherichia coli O157:H7 # 3 199 4 199 206 157 41.0 1e-38 MKIIGLTGGIGSGKTTVSDLFGELGIDVVDADVVSRQLTAVNGGAMPEIIKQFGPRAASP DGSMNRKFIRELVFSDPEAKTDLENILHPLIRKECQRQLVASQSPYTILSVPLLIESPFW RSSIDRLLVVEAPEALRIERVVQRSKLTHEAVKKIISSQATTAQRLDAADDVIENVGTRE MLKASVLKLHSMYLSLGKQD >gi|301349788|gb|ADCQ01000062.1| GENE 46 54428 - 55198 461 256 aa, chain + ## HITS:1 COG:RSc2829 KEGG:ns NR:ns ## COG: RSc2829 COG4582 # Protein_GI_number: 17547548 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 5 255 1 251 252 193 40.0 2e-49 MTETLLRYEFPSNEKLRTFLRLADLFKQLTWFAQQENSNDHRAAIIKYFEIQEVTTRGDQ KNDLLHELARFRSCLEPLANNDNVDQESLKETLDKLQASRAELSCVGVRISHLSSQNEFL KTVGQRSGIPAGTCEFDVPVYHHWLHLPAEERKHYLNEWIKPLLPYSNAIDLILNLLRGT AELNDVEAVKGSYQKDLQGKTFTLLQVFVDPKLNMIPKISANRYLLSVRFSGANFGNGPI AEIPEVMPFRLGLCNM >gi|301349788|gb|ADCQ01000062.1| GENE 47 55204 - 55437 281 77 aa, chain + ## HITS:1 COG:RSc2830 KEGG:ns NR:ns ## COG: RSc2830 COG3024 # Protein_GI_number: 17547549 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 5 66 6 64 71 60 50.0 1e-09 MAIKVKCPTCGRECEYSDKNPYRPFCCERCRLIDLGAWAEGKYSIKDKPMEGDDDLDISA DALATGKIAAHKADLEK >gi|301349788|gb|ADCQ01000062.1| GENE 48 55440 - 55835 337 131 aa, chain - ## HITS:1 COG:RSc2831 KEGG:ns NR:ns ## COG: RSc2831 COG0494 # Protein_GI_number: 17547550 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Ralstonia solanacearum # 4 124 23 143 153 118 50.0 3e-27 MTTKPTEVVVAVAFDKDGRFLMTSRPEGKVYAGYWEFPGGKVEAGETLEEALVREMKEEL GVQVTDCREVYSTVFQYPHATVHLNFLHCRLNPEELKCLEGQTYRFCTLEDLPHPILPAT EPVLAQVTARK >gi|301349788|gb|ADCQ01000062.1| GENE 49 55825 - 56709 682 294 aa, chain - ## HITS:1 COG:RSc2832 KEGG:ns NR:ns ## COG: RSc2832 COG2607 # Protein_GI_number: 17547551 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Ralstonia solanacearum # 4 285 3 287 294 337 60.0 1e-92 MTDAKLEQKLERLLDRLEILLPKTEDEVDWSASAFRWRRKQYLGMSYGVLEPIHRVALVD PDSIKNADQQKAALLRNTEQFVRGLPANNVLLTGARGTGKSSLIRACLKQFADQGLRLIE VDKEDLKDLIDIAQRIADRPEKFIVFCDDLSFEFGEGGYKALKAILDGSVASTGDNLLVY ATSNRRHLMPEKMQDNLASSMDEDGELHPAETIEEKMSLSERFGLWLSFYPFSQKEYLAV AEGWTKHFGGEINDRWQTEALQFALQRGSRSGRVAYQFARDWAGRTHLEAEHDN >gi|301349788|gb|ADCQ01000062.1| GENE 50 56718 - 57947 1560 409 aa, chain - ## HITS:1 COG:RSc2833 KEGG:ns NR:ns ## COG: RSc2833 COG1364 # Protein_GI_number: 17547552 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Ralstonia solanacearum # 1 409 1 409 409 459 60.0 1e-129 MAVNLFPPEPSEIYSVPGVVLGVAAANIRKPNRNDVLVVELALGSRVAGVFTSNRFAAAP VQVCRAHLAETKNIRALVVNTGIANAGTGEQGLQDAQGTCRKVADIFDCSPMQVLPFSTG VIMEPLPMNRLLKGVEEAAKHLSRTNWIAAAEAIMTTDTVPKCVSQRVMLDDEEITITGI SKGSGMIEPHMATMLGFIATDVAIGQDLIGKVVKMVADASYNRITVDGDTSTNDSFVLIS TGCSNARPIESMDDPRFDDLLDSLIEVGQKLSQAMVRDGEGATKFITITVEDAKNEAEAL KVAYAVAHSPLVKTAFFASDPNLGRILAAVGNSKIPDLDATKVSLWLDDVLVAKNGGRAP EYMEEQGVAVMSQDEITVRISLGRGDACETVWTTDLSHDYVSINADYRS >gi|301349788|gb|ADCQ01000062.1| GENE 51 58070 - 60736 3398 888 aa, chain - ## HITS:1 COG:RSc2834 KEGG:ns NR:ns ## COG: RSc2834 COG0653 # Protein_GI_number: 17547553 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Ralstonia solanacearum # 1 887 2 933 934 1147 64.0 0 MASFLTKIFGSRNDRLIKQYRRKVAVINKLEPEIKALSDEQLKAKTAEFRQRLADGASLD SLLPEAFAVVREASFRVLGMRHFDVQLIGGMVLNDGKIAEMRTGEGKTLTATLAVYLNAL PGKGAHVVTVNDYLASRDAAWMGKVYNFLGMTVGTILSNQPNDQKQAAYAADITYGTNNE FGFDYLRDNMEYETGARRQRGLFFAIVDEVDSILIDEARTPLIISGPAEGSTDIYVAIDK IPDMLVRQKQEKGEGDYWVDEKQHTVQLSEAGHEKVEKIMVDMGLLPAGQSLYSPSNIML LHYLNAALRAHTLFVKDQHYVVQNGEVIIVDEFTGRLMKGRRWSDGLHQAVEAKEGVEIQ QENQTFASITFQNYFRMYEKLSGMTGTADTEAYEFQEIYGLETVVIPTHRMMIRDDQQDK VYRTAKEKYKAIVDDVKECYGRGQPVLVGTTSIENSELISDMLTKAGIPHNVLNAKQHER EAQIVMEAGRPGMVTIATNMAGRGTDIVLGGGISKALEQIDNDETLSDEQKKAQKEEIKA KWQVDHDRVVELGGLRIIGSERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDPLLRIFA GEKMQALMNKLRLPEGEAIEAGIVSRSIETAQRKVESRNFDIRKQLLEYDDVANDQRKEI YALRNEILENKDVSGPVKELRDGYFTSLFRHYVPADTVEEQWDLEGLEKELKEQWNLDVP LKATLEKSESSDDQELLDMLLAATNKVYDEKVALVGHEAFAQFERNVLLQFLDQRWREHL SQLDMLRQGIYLRGYAQKQPKQEYKREAFELFANLLETVGADVTRVLMNVQIRQPEPEEV AAAQQEAQAPAQQEALSQEEDPFAHVGRNDPCPCGSGKKFKDCHGKLR >gi|301349788|gb|ADCQ01000062.1| GENE 52 60964 - 61524 528 186 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858982|gb|EFL82066.1| ## NR: gi|302858982|gb|EFL82066.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 186 1 186 186 346 100.0 4e-94 MYPRSAQKPISKVLQKGSLAKHFGFLKLAKRLAAVIDPVCQGYKLGASVTPDCLRITVQQ VRIKDENPYDIDPDEDPRDLIKEVLLLEIGLPNPLFVRRFTMFQPSVEKALAEKGFGAMK VKPVIDRCGLHPQPFLFTESGPAIGGPGAVEGAKELSERLPESSPLKEAMAKLAATLEEH QGPGRR >gi|301349788|gb|ADCQ01000062.1| GENE 53 61572 - 62489 1077 305 aa, chain - ## HITS:1 COG:HI1144 KEGG:ns NR:ns ## COG: HI1144 COG0774 # Protein_GI_number: 16273070 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Haemophilus influenzae # 1 301 1 302 305 355 53.0 7e-98 MIKQRTLKKVFSTVGIGLHSGRKVRLTLRPAPPDTGLVFTRIDLKPPVAIKAEPERVNDT RMATTLDKDGARIATIEHLMSALSGLAIDNCYIDVDAPEIPIMDGSGSTFVFLIRAAGIE EQDTPRKFVRVKKNVSIHVGDKWASLEPYDGYKLSFAIDFGHPAIDETAQFVEVDFNKEN YIESVSHARTFGFVNDLEMLWGMGLAQGGTLDNAIVLDDFHVLNPDGLRSQDEFAKHKLL DAMGDLYVLGHPLVAHYRAFKSGHEINNKLLRALLANPENWEFVEYQDEHTAPKAFTEAV KEPSN >gi|301349788|gb|ADCQ01000062.1| GENE 54 62505 - 64157 1875 550 aa, chain - ## HITS:1 COG:RSc2839 KEGG:ns NR:ns ## COG: RSc2839 COG0206 # Protein_GI_number: 17547558 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Ralstonia solanacearum # 15 367 14 365 400 295 54.0 2e-79 MEKAFEPYVDGSTNTVIKVVGVGGAGGNALNTMVTKLTDCQVEFIAANTDRQALTRSLAS EKISLGRTGLGAGARPEVGFQAANDAREEIAEKLRGADMVFITAGMGGGTGTGASPVIAE VAQELGILTVAVVTKPFSFEGGKRMRNAELGLNQLKNRVHSLIVILNDKLEEELGEDATM RECFEKADEVLFNACAGIAELIQKVGQINLDFEDVRTVMGTRGTAMMGSGEAEGPDRAVT AASMAVTCPLLEGVELRGAKGLLVNITAQEGIRMSEVRSAMETIKNYADSDALIVFGTVY DDSMGDKVRVTVIATGLDQNGTDDSIVKTSFVNGKPAVDNPSNLWQPSGSAPDSLPNDLF GNVDAPAKPKVHASAAPRTASSFAQPQTHSTAAPTHTAAPAAPAAKPEVKAEEVKTEVNP FGTYTPQPQKKAEPAPAPKAEPKELQSEAINPFDQAFSRPIATPDAGGFEGPKDNTIFGN FHASNNIRPASDVFATLNPQAGNGNDSGLWTANQHNGAPEAKGQGAVEAKAEDEKPRFEY GIPAFLRKKN >gi|301349788|gb|ADCQ01000062.1| GENE 55 64354 - 65676 1084 440 aa, chain - ## HITS:1 COG:RSc2840 KEGG:ns NR:ns ## COG: RSc2840 COG0849 # Protein_GI_number: 17547559 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Ralstonia solanacearum # 1 440 1 410 410 236 33.0 5e-62 MADKSNDLLVGLDIGSSKVVCMIASPVSSSTFKIEGLGECKSEGIEQGGVVDINQAVDCV RAAVEEAEKTANTTVKTVAAGISGPHIRTDNCIQQTIVGSGEIEQKDIDDLLNTAMSVTL PPSMRYLDVIPQEYSVDYARRIRTPIGMEGKKLEGSLHVVTAQSAQCLFLNKVIRRTGLE LIDSQLIFNPLAAASAVLRPEEIDLGVALIDIGSDLSDVAVFFDKAVQYSAVHPMGGQQI TDEISIKTHLSQEAAEKLKLQMGQVRYDARKDKDSFIRLPTAPGYSDDGGRILSKQALSA IIDVKVQDILEKIYYRIRDKSLHTQLGYGVVLTGGGATLPGIQRMAKEVFSSHMAGREIN VRLGRPLVNYETSEFVPPELYNTESFPKQFAGYSTPQHAAVLGYLCQLNQKFWAQGSNIG SKRKLKSIGGVIKQWIFGNF >gi|301349788|gb|ADCQ01000062.1| GENE 56 65666 - 66475 597 269 aa, chain - ## HITS:1 COG:RSc2841 KEGG:ns NR:ns ## COG: RSc2841 COG1589 # Protein_GI_number: 17547560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Ralstonia solanacearum # 28 243 27 246 299 90 27.0 4e-18 MRRWSASTFSLFADVFGVLFILLVLTSAVYWFVQRPVFLLKGVDVQVEGNKDAINVKDVA QVLDGHIHGNYFTADLSEIADQFKRIPWVRDVSIGRVWPNQLQATLYLHHPIAVWGDEKL LAEDGTLFVANQEIAESKGALPKIFGPVDRRMEIYKQYQAFEDTCRKLGYDVTSLTYSEY SGWTLHFKRPEGKVIKLVLKKGENSAQMDERLIKIIESLPAISAQIGAEPTELDARYEKG IAVLKPAPEEETVSPEDTVQDTGDKKNGR >gi|301349788|gb|ADCQ01000062.1| GENE 57 66479 - 67420 1070 313 aa, chain - ## HITS:1 COG:RSc2842 KEGG:ns NR:ns ## COG: RSc2842 COG1181 # Protein_GI_number: 17547561 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Ralstonia solanacearum # 3 312 11 321 331 280 47.0 2e-75 MKSVDVKDLGKIAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLAGI DRAFLILHGKGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGM VLRNETDCEEAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAE EYVFGRELTVAVLDMGEGLKAFPIIEIKAPDGDYDFEHKYFSDETVYVCPAEVPENVTEK IKAVVEKAALAVGADAWSRIDVILRDDGSFVLLEINTAPGMTPHSLVPLAARTCGISYEE LVKQVAARASLKG >gi|301349788|gb|ADCQ01000062.1| GENE 58 67424 - 68782 1506 452 aa, chain - ## HITS:1 COG:NMA2061 KEGG:ns NR:ns ## COG: NMA2061 COG0773 # Protein_GI_number: 15794939 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Neisseria meningitidis Z2491 # 1 452 49 504 506 551 61.0 1e-156 MGIGGTGMNGIAEVLINLGYHVSGSDLKENAAVEHLRSIGAEIFIGHDASNVGDAGVVVT STAVHADNPEVVEAKNRNIPVVPRAIMLAELMRLRQGIAVAGTHGKTTTTSLITSILERG GLDPTFVIGGRLNAAGSNAKLGQGLYIVAEADESDASFLNLSPVISVVTNIDEDHMDTYG HDLRNLRKAFTDFIQRLPFYGRAVMCIESENVRAILPKITKPILTYGFREDAQIRAENIR ADGTQMHFTLVRDGAAPEEITVNLPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGV GRRFAVWGEAQSLKGEKFLVVDDYGHHPTEMAATIAAARGAYPDRRLLVAFQPHRYTRTR DCFEDLVRVLSNADALVLEAVYPAGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVME LVNNNVKEGDVVLVMGAGNIGEVPGKLMKQGK >gi|301349788|gb|ADCQ01000062.1| GENE 59 68815 - 69897 1090 360 aa, chain - ## HITS:1 COG:NMA2062 KEGG:ns NR:ns ## COG: NMA2062 COG0707 # Protein_GI_number: 15794940 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Neisseria meningitidis Z2491 # 3 349 4 346 355 265 42.0 1e-70 MSKHLVIAAAGTGGHVMPGVAVAKILISRGWTVSWIGTEQGMERRIVERQKIPFTALDFQ GLRGKGLKTMLFGGFKLLKCIAQSRTILTKKHADAVFSTGGYIAVPVCLAAGLKGIPYVL MNSDADPLLSIKMVQGNAAGVMCGFDGKAAKLAGDKGVVTGNPVRKEILAIPAPEERYQG REGRLKLLIFGGSLGAQVFNQNVPSLIAALPPEKRPEVIHQCGMKAVEEVKASYAALGIE AQVVPFIEDMAAAYVWADVVLARAGAISVSELTAAGVPSILVPLVTKTTSHQVGNAKYMQ EAGAAIYLPQSELTTGKLTALLEGLNREELLEMAKKAKALGKPDAAATVADFIEYVSNKE >gi|301349788|gb|ADCQ01000062.1| GENE 60 69894 - 71129 1394 411 aa, chain - ## HITS:1 COG:RSc2845 KEGG:ns NR:ns ## COG: RSc2845 COG0772 # Protein_GI_number: 17547564 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Ralstonia solanacearum # 40 411 41 413 413 397 55.0 1e-110 MLIRRRKKEDADDIVTRVGDYNNAAALNYEPRDIGPVPPDYGVLFVVFSLMLLGCLMVFS ASISLGDSPKYHISEHYFFVRHVISLVVALFGAYIVWHIPMKAWKKMAFPFFLFGLFLLG AVFIPGIGKSTNGACRWIPLGLFNLQVTEVMKIAVLIYAADFTVRKQNYMHSVKKGLLPM LLVMGLVGFLVLKEPDLGAYVMMLAISMGILFLGGINLTVFIMVLVGVLGLLVFMIFAAS WRAARFFAYLDPWEISNAQGKAYQLSHSLIAFGRGESWGVGLGDAIEKQHYLPEAHTDFI LAIVGEELGFAGVMLILVLLFWLVKRAIEIGRTAIHLEHIFSGLVAEGIGIWIGVQTFIN VGVASGLLPTKGLTLPFISFGGSAIMAVTAAVAILLRVDYENKVTMKGGKV >gi|301349788|gb|ADCQ01000062.1| GENE 61 71123 - 72556 1407 477 aa, chain - ## HITS:1 COG:RSc2846 KEGG:ns NR:ns ## COG: RSc2846 COG0771 # Protein_GI_number: 17547565 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Ralstonia solanacearum # 7 474 57 543 546 373 49.0 1e-103 MSVSQKVLVLGLGASGRTAARFYASRGFEVLAADTRPQPPRLDELQKEIPNLKFLGGAVS PVIVAEVSEVMISPGLSPEYSVFAPAVKEAKHRGIAVVGEIELFARELKKLKAETGYAPK IIGITGTNGKTTTTMLSTAIIAEAGKSVVAAGNVGPNALGELEKHRQVGTLPDFWVLELS SFQLETTESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIFSADTVRVLNREDPGSMLS AEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASASPELLIPMNALRIRGLHNA MNALAATALTLAVGIPLDSILRTLREYKGEPHRVQLILRASDIDYVDDSKGTNVGAVAAA LAGFGPKKVVLILGGDGKGQDFAPLKAPIETHAKGAVFIGRDAPLIEKEVDYPGLLKAHA KTMAEAVREARAMAKPGDTILLSPACASWDMFKDYADRSAQFVAAAKEIAEEEGQLC >gi|301349788|gb|ADCQ01000062.1| GENE 62 72563 - 73726 1398 387 aa, chain - ## HITS:1 COG:RSc2847 KEGG:ns NR:ns ## COG: RSc2847 COG0472 # Protein_GI_number: 17547566 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Ralstonia solanacearum # 1 387 1 389 389 467 66.0 1e-131 MLLALIQWLADSTSLGWLRVFNYLTLRAVLAALTAFFIALALGPAVIRELRKLKVGQAVR QYGPKSHLVKEGTPTMGGILILIAVGASTILWMDLSNRFVWVVLFVTLSFGAIGWVDDYR KVVHHDPEGMKSREKFFWQSLVGVIASVYLAFSVAAPGNEHIWGLVLQWMESGFTSIPLP ERSNLLIPFFKNVSLPIGIWGFIVLSYFVIVGTSNAVNLTDGLDGLAILPSALVGIALGI FAYVVGRVDYAAYLNFPYVPGAGEVVVVGAALIGAGLGFLWYNAYPAQVFMGDVGALALG GALGTMAIITRQELVLFIMGGVFVMETLSVILQVSYFKITHGKRIFLMTPIHHHFEMKGW KETQVVVRFWIITIVLVLIGLSTLKIR >gi|301349788|gb|ADCQ01000062.1| GENE 63 73727 - 75115 1238 462 aa, chain - ## HITS:1 COG:RSc2848 KEGG:ns NR:ns ## COG: RSc2848 COG0770 # Protein_GI_number: 17547567 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Ralstonia solanacearum # 24 448 25 461 482 251 38.0 2e-66 MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGERDGHEFVQA ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNGKTTTTQ MVLSIIKERFQKGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEMRPLVSA IAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEWRKMAGN NRVVTFGTPDSDVYACEVEGTAFRLVTPIGQIDIELKVPGKHNIVNAVNAAAVLFAMGRD LCDIKKGLENFEAVSHRGEVVTLDDGSVVIDDSYNANPDSMNAAVNMLSEYQLPKIFVAG DMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAVEGYGEGARHFETQEELLAALK EEMVKGPHAVLFKASNFMKLFKLADELVRTWNKQEEKEPKEN >gi|301349788|gb|ADCQ01000062.1| GENE 64 75108 - 76574 1245 488 aa, chain - ## HITS:1 COG:RSc2849 KEGG:ns NR:ns ## COG: RSc2849 COG0769 # Protein_GI_number: 17547568 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Ralstonia solanacearum # 11 480 23 507 514 337 44.0 4e-92 MVDAVAVAAEIKRFAPAGAALLLDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVV AEKGDIGPCSVPVIEIDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLM NRLGTPCASIGTLGCTLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLE QGRLDGTEIKTAVFTNLTRDHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIM KTAEGAGKAILTVSAKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVEN FLCTVGAMISVGFEIETVLKEVAKLMPPAGRMQIVRDDHGPIFAVDYSHTPDAVTQAIKA LEGLAEARGGRIWIVVGAGGDRDHGKRPLMGQAACAADEVVLTSDNPRSEDAKEILKQIQ AGTTKPCTVIEDRRKAIEYAAEHAAADDVILVAGKGHEDYQEVKGVKHHFSDVEETREAL RKLRNKNE >gi|301349788|gb|ADCQ01000062.1| GENE 65 76567 - 78474 1985 635 aa, chain - ## HITS:1 COG:RSc2850 KEGG:ns NR:ns ## COG: RSc2850 COG0768 # Protein_GI_number: 17547569 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Ralstonia solanacearum # 27 579 20 576 595 513 48.0 1e-145 MRIRQWLRDAWDNVFMPTEEKRGDDDSVKDLLRLKIKPGRSKFVYFMLLLCFTALGVRIG WLQLGFNTEFLQKQGAMRFQRTIEVPAMRGQIYDRNGTLLATSVTAKALWIIPQDVKITT SQLKEIAKTLDVPVSELRKKFNSKRTFVYLKRQVPIETAEKVLDMKIPGLHSTREFLRSY PDGEAAAQIVGLTGLDGNGIEGIELAAEKRLAGKPGSRRVMKDRLGRIVEDAWLKEPMNG ENITLTIDSRLQNLAYEALGRQVENLKAKGGSIVIADPKTGDILALANYPSFDPNNRGKI SRTGVRNRAIVDTYEPGSTMKPFSVAAGLEEKKVTPNTLFQIGRSMSFGRHSIGDSHYSK ELTVSGIIQQSSNIGTSKVALLMTPQVMWSYYDKLGFGHSPQIGFPGAVAGRLRPAKNWR PIEQATMSYGHGVTVSLLQQVRAYTVFARDGDMIELSIYKDRAYREPQRVYSAKTAGQMR DMLAKVVEKGGTGFRARVEGYTAAGKTGTAYKVEGGQYVRKYVAGFAGYAPAHNPQIVVG IMIDEPMIGKHFGSTAAAPLFSEMVSKTLRLMAVNPDRPEDFMVTKNDKKPAKAKAQPAK THALKESNRARAKAPSRTNLKSAKEDHVIKGKTNG >gi|301349788|gb|ADCQ01000062.1| GENE 66 78471 - 78773 331 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858996|gb|EFL82080.1| ## NR: gi|302858996|gb|EFL82080.1| cell division protein FtsL [Burkholderiales bacterium 1_1_47] # 1 100 1 100 100 169 100.0 5e-41 MNEFRFLVGMIVILELVLFACGLKVVENRHNARKLFIELEHEQQIHHSLMDERARLKLEI SNLEQIRQVEARAKEGGLAPAENGRVIILDKNAVSSGAQK >gi|301349788|gb|ADCQ01000062.1| GENE 67 78770 - 79738 938 322 aa, chain - ## HITS:1 COG:YPO0547 KEGG:ns NR:ns ## COG: YPO0547 COG0275 # Protein_GI_number: 16120875 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Yersinia pestis # 8 310 14 317 320 294 53.0 1e-79 MQAEVLVHRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEE AVKAAAQIQDPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFSFRF DGPLDMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPILRT KQLADLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGVLAV ISFHSLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVRILPSEKECEENPRA RSSVLRGASRTDAPWPEQGVQV >gi|301349788|gb|ADCQ01000062.1| GENE 68 79756 - 80007 238 83 aa, chain - ## HITS:1 COG:RSc2853 KEGG:ns NR:ns ## COG: RSc2853 COG2001 # Protein_GI_number: 17547572 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 2 83 61 142 142 79 43.0 2e-15 MALPYSARVFQRIVMGSAVDVDMDASGRLLVPAELRKACGLSKEIVLVGLGSHFELWDAE KLAESEAKAMTENLSDIAAQFNF >gi|301349788|gb|ADCQ01000062.1| GENE 69 80801 - 81994 1465 397 aa, chain + ## HITS:1 COG:no KEGG:Ctu_12560 NR:ns ## KEGG: Ctu_12560 # Name: crcA # Def: palmitoyl transferase # Organism: C.turicensis # Pathway: not_defined # 78 209 56 192 192 101 39.0 6e-20 MHSIEKVVKNKIIRTIFGAGIIAIASSASAEDSGRSVWEAIVDTLPAGVVSEENSSGSYL SDTWVGMKTIISEGSSGLLLPAYTIHPGYAYKTEKRHNENGYTWGGGISRNFIDSRGNRR IMYAMAFSDSHNNFEPFMGYGWLSRWRLGSTPFYAEAGYTIGLTARGDYKWIPFPAPLPL VGVGTDNFSIYGTYVPFSDIFFFFANMTFDDRKTRHMPDTPKSLFSNKVLIYAGGGWQKT TLKGTPKPSSISSDGAYSAGLRYFVTPEWALDFSVNRSGTHGIHANGSKVGSYKLTSYSL AVQYHFRAAERVKLYAGVGAGYFRSDQQDFKEGWGAKKDIFTPVIQAGGTVAITRNLHVT GGMDLGFPRYKAHSPTDDSFSMRPSPVTFKLALGLAF >gi|301349788|gb|ADCQ01000062.1| GENE 70 82208 - 82369 206 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859000|gb|EFL82084.1| ## NR: gi|302859000|gb|EFL82084.1| hypothetical protein HMPREF0189_02068 [Burkholderiales bacterium 1_1_47] # 1 53 1 53 53 84 100.0 2e-15 MNFGKIAWISVLTAWVLATLYGALLVTSAGNAESQDFGQLLTSFVKKISTAEN >gi|301349788|gb|ADCQ01000062.1| GENE 71 82806 - 84605 1165 599 aa, chain + ## HITS:1 COG:no KEGG:PTH_0149 NR:ns ## KEGG: PTH_0149 # Name: not_defined # Def: transposase # Organism: P.thermopropionicum # Pathway: not_defined # 3 538 1 495 547 260 33.0 9e-68 MPLHVSIVSVKNYKYIRVYSSYRNEKGQPRSRLIENHGRLDAALLKDPQYVEKLKERIAK ENQLEASTKAQEVEKQAKERMDKLSQAAKGLNDKPGCFKTYNVGAALIRKVWSDLKLPEM FRHLQRSRKIEYSYDQTAYLLTEQRLLQPTSKLRSFANRSGSIIDHAKVDHLKDLYKVLD LLQEDKATIVRHLNKEIQKKTKRKVTAAFYDVTTYSFESRCVSDYKDFGISKDHKVNEVQ VVLGLVMDENGIPIDYELFNGNTNEFGTMVPLIEKIKKTYHLKQLIVVADRGLNSCQNLF DLKDIGCDFVIAQKFKTTSEHLKEQILDQENWQKFVCNDEGEVVCRYKTLDVKQELFEMR ESPTTHRNYKTSNVLDTMDLKWVVSYSPSRAAKDKADRDRAVEKAKKAVEDPSRLKNSGY KSLVKIPKGKGSPTLNWEKINEQAKWDGYYVICTNLEISPHDATAIYRKLWQIEDCFRVS KTYLEARPCFVWTDPHIYGHFLSYFISLVIEKYMLYTFKNELGKEEITHEKMLEALRTAE VVYDDINPQVPFYLRLYEAGLFDRMSALFNLEALNRVEAPSALRRKLHLPLTKVVATPT >gi|301349788|gb|ADCQ01000062.1| GENE 72 85070 - 86362 1702 430 aa, chain + ## HITS:1 COG:RSc0666 KEGG:ns NR:ns ## COG: RSc0666 COG0001 # Protein_GI_number: 17545385 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Ralstonia solanacearum # 7 425 10 433 433 533 64.0 1e-151 MDQNEVLFDRAQKSIPGGVNSPVRAFRSVGGAPRFIKKALGPHMYDVEGKQYIDYIGSWG PMILGHNNPHVIEAVKEAVDNGLSFGAPTVGEIDIAEEIKRLIPSVEEVRLVSSGTEAGM SAIRLARGYTGRNKIVKFEGCYHGHSDSLLVKGGSGLLTFGTPSSAGVPTAVTNDTIVLE YNNPKQLKELFDKEGDEIACVIVEAVAGNMNMVPATQEFLETMREETAKHGTVLIVDEVM TGFRVALGGAQSLYHIDPDITMFGKVIGGGMPVAAFGGKRDIMNSVAPLGPVYQAGTLSG NPVAVTCGLATLHEIQQPGFYKRLSEQTAKLVKGLGAMAKKHGVAFSAQSIGGMFGIYFR GKCPTSFKEVMECDADRFKTFFHAMLDNGVYLAPSIYEAGFVSITHDDSVIARTLEAADE AFAKVKRVHG >gi|301349788|gb|ADCQ01000062.1| GENE 73 86389 - 88467 1676 692 aa, chain + ## HITS:1 COG:CC0217_2 KEGG:ns NR:ns ## COG: CC0217_2 COG4232 # Protein_GI_number: 16124472 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Caulobacter vibrioides # 301 684 1 401 405 275 47.0 3e-73 MRFAWLLRFLLLFFAVFALNAQALPWKKTEAVKAELISQTTSVQPGSSIRLGVLLTQEPG WHTYWKTPGDTGLPTTIDWSLPEGWKAGSIQWPTPKLYVVGDLTNFGYEDSILLPVSISV PASAKEGGYVAKANVSWLMCAEQCIPGSASFDVPVKVSNAEPAASPNAGLFQTNDGLTPT PLKTVSAQIDPSNRALSVTFKTSEPFNHFYVFTEGEGAVDYKAPQSVSKNGDEVTVRLQG TEELKAGDTLSGVFSADGGPAQGGWSGSFSHVLVNGTVTPPSASSDNTDVNLTVWLAAGM SFLGGLILNLMPCVFPVLSLKMLSLVEHRGDGKLALQGLSFTVGVLISMTLLAGALIAVK AAGASVGWGFQLQSPWFVALLALLFVTITLNLAGAFEFSGVRISSTGQTSGASLGGSFAT GILAVVVASPCTAPFMGAALGYALSSSALESFVVFLCLGLGMSLPWLLLALFPCLTAWLP RPGRWMSIFRTVMAVPMALTALWLFWVLWQQVSLSALGVYLLAAALLAIALVLYGRLQFG KATSKGLMAFAFILGAGAYAVAASPLLERAPAEVSAADAWSPAALQAALDEGRPVFVDFT ASWCVTCQANKLAVLDRENVQRAFKEHNVKFLIADWTNRNAEISKTLESFGRTGVPLYLL YAPDGTAKILPELLTQDIVVDALKALPKGAPK >gi|301349788|gb|ADCQ01000062.1| GENE 74 88570 - 89220 1008 216 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859004|gb|EFL82088.1| ## NR: gi|302859004|gb|EFL82088.1| putative serine/threonine-protein kinase [Burkholderiales bacterium 1_1_47] # 1 198 1 198 216 204 100.0 4e-51 MILRKLTLALSAVALSFSVSAFAQQAAPQPEQQAPTNPAGEVIGKLATMGHMQFGDFPVT QTELDRASEFVQARAAQTGKTITRDQSLVALGYIAGQLGVFMQLQGNGQQQAPDDDLGPT PQAVPAPQAAPQAAPKAAPQPAPQAASQPAPQANNQLPPGAVQTQPIEIIPNGMMMGNGQ MMGNAPMMIYAPEVGATGQAPAQAPAQAPAPQSAQQ >gi|301349788|gb|ADCQ01000062.1| GENE 75 89299 - 89595 433 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859005|gb|EFL82089.1| ## NR: gi|302859005|gb|EFL82089.1| hypothetical protein HMPREF0189_02073 [Burkholderiales bacterium 1_1_47] # 1 98 1 98 98 180 100.0 2e-44 MSDMEMDPLANRSSSGLDYSTLLEKLLQQNGYTSDNSKHGLKSALKDYEAVFHSGAPKWL DLVWPSIGVSLLHLALSFKQPLPENVDLPQEALKNGLR >gi|301349788|gb|ADCQ01000062.1| GENE 76 89645 - 90454 856 269 aa, chain - ## HITS:1 COG:no KEGG:blr4068 NR:ns ## KEGG: blr4068 # Name: not_defined # Def: hypothetical protein # Organism: B.japonicum # Pathway: not_defined # 1 266 1 271 272 145 32.0 2e-33 MKKILIPALTAALLCSSAFALETSVAPKVTDIKNHSPKTGLIVGNSYSFYNCGVHSYLRG LTRENKQDWKARIITISSGRLSYHDVEQYMGPHEMDPYAKKDEKGNLINPMFDVVILQGM STEPIAEKSIPTFKKFLKQHVATIKAKGAEPIVVDTWARQNKPEDTKKLADAIITAANEN DAIVLPVGLAFAESLKQRPDLLMHQKDKSHPTAAGSYLYGAMLYGLLFKKSPEGMTYLGE CEKPLKPEDAKFLQKLAWDVLTDFYGWKK >gi|301349788|gb|ADCQ01000062.1| GENE 77 90500 - 91870 2082 456 aa, chain - ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 8 454 6 460 462 282 41.0 8e-76 MTVLLPWFALVVTILAGWAIIKRLSTSMVLLFAGLAMISFAVICGVHGFLPKGVKPSGFV WFDIFELLRSIATKQTSGIGLLIMVAGGYAAYMDRIGAAHALVRVCVKPLDALSSPYLVL VMGYLIGQALVTVIPSAAGLAMLLLVALFPILRAVGCSAAASAAVIGTSAGMTLGPASGT ANLAAQTAGLEPIIYFVQCQLPVAIPTLIVVAICHYFVQKYYDKKNDDVYSDAILTKKDD LRNVPGWYAILPVLPIALMIVFSKLVYSAVKLNTISALLLVWVFTIIVELIRRRDFKPVL ADGAFIFKAMGGMFSSIVALIICAEFFATGLKVTGLISALITHAQGMGLGLNGMTAVLTG VVGIVTFLTGSGVGAFSSFAALAPEVANGLGGTAAAFVTPMQFASGMLRAMSPVAGVIIA VAGAAGVSPMAIVRRTWIPMIAGMITVLIANVVFLG >gi|301349788|gb|ADCQ01000062.1| GENE 78 91873 - 93303 1854 476 aa, chain - ## HITS:1 COG:lin2196 KEGG:ns NR:ns ## COG: lin2196 COG0165 # Protein_GI_number: 16801261 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Listeria innocua # 37 429 64 439 456 158 30.0 2e-38 MTVRDEFFWLGEINKATLVINSRQGLLPMPIAEEAAKALREVLADGDADPTKRAKTYITF EPLMLKKADPVITLMHAGRSSQDMHATYRSAILRDHVLEVGDALNAVLETMTDLADKNRE TVVPNYTNGVAAQPNSLAHYLLAFLAGFSRDAQKLRQFYVRLDRCPMGSTVLNGTCWPLD REAMCKRLGFEAVAENAYDATQIGQSDLPVEFASILTGICLHINVFLEDLMVQYAQARPW ILLQEGGDNTYVSSAMPQKRNPGLVNNCRTESSSVIGEAQAELFRAHNLQSGMIDPKNQT LNGALALHAVKVLTMFNRVLKALVINKDRALEELNSDWTASQEVADRLMKEYGVPFRIGH HAASHIVSYARANNILPLDFPYAKMQEIYKEVIEKEFPEGDPKFPMSEEEFREALNPVSI VHNRKTLGGPQPAELERMLKEQTAENHLNEQWVADKKAFIQSSLDKLNKEFETLGE >gi|301349788|gb|ADCQ01000062.1| GENE 79 93472 - 94437 559 321 aa, chain + ## HITS:1 COG:AGc4500 KEGG:ns NR:ns ## COG: AGc4500 COG0583 # Protein_GI_number: 15889748 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 291 1 291 299 123 30.0 4e-28 MSKLDDLSAWRLFCSLCNTRNFSDTAGEFDVEVSTVSRALTSLENALGQTLILRVTRPLQ LTESGQIAYEHASNILLQHEEMVKELTQSSAGMAGKIRLSLAPGSVAVYIPMLMEFNSQY PEIVFDIVGGGNVQDILQYKADISVASFKSKDPRIVSYSRGRNVYVPVASRRYIEEHRMP LHPKDLAAHTVLVYDGSVRSATRYLENGDKREEVKWKQVLRVSNILAIKKSVIDGLGISV DLPLFHCAQEIASGILVPILPGWVHPPVECFVCTSKTNWRIRRHRVFLQWFQTRLVQFFK SKEDMVAPFWDIPQRTIVNEI >gi|301349788|gb|ADCQ01000062.1| GENE 80 94434 - 95249 999 271 aa, chain - ## HITS:1 COG:RSc2773 KEGG:ns NR:ns ## COG: RSc2773 COG0284 # Protein_GI_number: 17547492 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Ralstonia solanacearum # 1 269 18 287 288 357 62.0 1e-98 MKFTDMLQHCWDVNQSLLCVGLDPDPKRFPKQFESNKHAILDFCWDIVKSTGDLVCAFKP QIAYFASSGAEDQLKELIARIHSEYPEVPVILDAKRGDIGSTAKHYAKEAFERFGADCVT LSPYMGFDSVEPYLEYPDKGAFILCRTSNKGGDDFQMLDCGGQPLYHAVAKKVEQWNTTG QLGLVIGGTYPKELASVRALTPELNFLVPGIGAQGGDINACVQSGMNAQKTGMVINSSRA ILYASSDEDFKEKARAVAMQTRDAINAARGL >gi|301349788|gb|ADCQ01000062.1| GENE 81 95384 - 96586 1257 400 aa, chain - ## HITS:1 COG:lin2884 KEGG:ns NR:ns ## COG: lin2884 COG0477 # Protein_GI_number: 16801944 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 3 393 4 396 402 202 33.0 9e-52 MRWKFILGLLTTCAVLMSMSYTMLIPFLPMYLIQDLGVVKADVDMWSGAIFAITFLVSGI MAPIWGALADKKSRKLVALRAGFCLAITYFLGGLVTNPWELLGVRFIQGLSAGLWPALLA IISVESPKLKLGFCMGVMQGGMTAGGVLGPLFGGLLADQFGMRMAFFIAAAALFLITLAL LFFVKEEPRKPDPNAKPVKIWDFSLCRIPAVKRMLICAGVVQLTILMQQPIMPLYVAELQ GSMERIVLISGIVFSVTGISGVLASPGWGILGQNWGYRPVLYLSLLGAGLFGIVQVFPNS LEWFTIWRFVGGLAFAGIFPAINAVLTVSTNANDKGRVFGLSYLAQQLGAVMGPIVGGAM TAYFSYKFIIGMSGFICLPLVLYLFLKRPAKTEGTGTPLV >gi|301349788|gb|ADCQ01000062.1| GENE 82 96794 - 98437 2036 547 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1 547 1 547 547 788 73 0.0 MTAKQVLFGNDARSRMVNGVNVLADAVKVTLGPKGRNVVLERAFGGPTITKDGVSVAKEV ELKDKFENMGAQMVKEVASKTSDNAGDGTTTATVLAQAIVDEGMKYVAAGMSPMDLKRGI DKAVAAAIEQLHSLSKPTTTSKEVAQVGAISANSDHEIGDIIAEAMEKVGKEGVITVEDG KSLHNELEVVEGMQFDRGYLSPYFINNPDKQVALLENPYLLLVEKKISNIRDLLPILEQV AKSGRPLLIIAEDIEGEALATLVVNSIRGVLKTVAVKAPGFGDRRKAMLEDIAILTGGTV ISSDVGLTLEKATLAELGSAKKVEVNKESTTIIDGAGKEDQIEARVKQIRAQMEETSSDY DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI RAKQAIKEIKGDNPEQDAGIKIVLRAMEEPMRQIVRNAGDEPSVVVDRVANGKGNFGFNA QTGEYGDMIEMGVLDPTKVTRTALQNAASVASLILTTECMIADMPEDKPAMPPMGMGGGM GGMPGMM >gi|301349788|gb|ADCQ01000062.1| GENE 83 98478 - 98765 554 95 aa, chain - ## HITS:1 COG:RSc0641 KEGG:ns NR:ns ## COG: RSc0641 COG0234 # Protein_GI_number: 17545360 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Ralstonia solanacearum # 1 94 1 94 96 129 74.0 1e-30 MKIRPLHDRVIVKRVDAETRTASGIYIPEAAGEKPDQGVVLAVGPGKRDEAGKLIPMDVK VGDRILFGKYSGQNVKVDGDEYLVMREEDIMGVLE >gi|301349788|gb|ADCQ01000062.1| GENE 84 98981 - 100408 1315 475 aa, chain + ## HITS:1 COG:PA3047 KEGG:ns NR:ns ## COG: PA3047 COG2027 # Protein_GI_number: 15598243 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Pseudomonas aeruginosa # 29 475 27 475 476 265 35.0 1e-70 MVKFSVVALSFFIFFSPAGQAASKKSAPSLPAPIQKALNSCKVPKGDFSLSVIPLSDKGT TLKFNGTAPRVPASSAKVITSAAALQLLGPAKVWTTRFISAEEPDKNGVLSGDLYLVGHG APSMTIERFWLLVDNLRARGVKEIKGNIIADRSHFDVAPHDPFAFDGEGNRPYNLGPDAL MVNSRSFFIKIRPDKEAGVAYLYPEPRIAGVKLPESIPLSKEGCGAWRKQINPDFSNPLK PAFKGKFPLKCGPKDYFYTSLSADQYLQVVFADMWKKAGGTWKGKVVQGKLPEDSDDYKV LASSYSEPLTKLVYNMNKYSDNIIARQLFLALANTQKDEPKNLEGARAAVYEWAASLRIP ASSLKIDNGSGLSRTTAVSTDAFVTVLKHMWNSPQMPEFVSSLPISGVDGTMRKRHVAQG NAHIKTGYIQNVRSIAGYVQTKSGERYAVAAIVNGPSAINSIPVMDAVICWVYDR >gi|301349788|gb|ADCQ01000062.1| GENE 85 100456 - 100758 551 100 aa, chain + ## HITS:1 COG:no KEGG:HEAR3351 NR:ns ## KEGG: HEAR3351 # Name: not_defined # Def: hypothetical protein # Organism: H.arsenicoxydans # Pathway: not_defined # 1 100 63 162 162 68 37.0 9e-11 MENKIEAVVRENVDTALEQADEFLKQASAATGEEAKELQAKAKECLARASRNMKSFYDKT SEEGREIAGEVNDCVRSNPWRAVGIAAVGGLLLGLLVARK >gi|301349788|gb|ADCQ01000062.1| GENE 86 100786 - 101235 420 149 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859016|gb|EFL82100.1| ## NR: gi|302859016|gb|EFL82100.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 149 1 149 149 256 100.0 2e-67 MSDRNNADPGLFTILNQVVDGLATRLQIASIELSVAKNNAAKTAVYTVLAALFGLFALVF ISVALLVIFWEDHRVFVSCCIAGAYLLLFLFFLGKARNLAANMPYAFEESRQILAADVAA FRASCNKKAGVATQQPVDPTKEENNNAGK >gi|301349788|gb|ADCQ01000062.1| GENE 87 101222 - 101602 454 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302859017|gb|EFL82101.1| ## NR: gi|302859017|gb|EFL82101.1| hypothetical protein HMPREF0189_02085 [Burkholderiales bacterium 1_1_47] # 1 126 1 126 126 220 100.0 2e-56 MQANEDVARKLAQLTVKAGEQRAQIQDELTYMRNKPASAVKNIGVDAVKTMQALGLTNPK IAIPLARTVFIPAAVAIARLVLKNGSPRRYLGAALIAASSFGIFKGIEYDEKHPIVKKDP TGPSSK >gi|301349788|gb|ADCQ01000062.1| GENE 88 101693 - 103015 1615 440 aa, chain - ## HITS:1 COG:alr5216 KEGG:ns NR:ns ## COG: alr5216 COG1253 # Protein_GI_number: 17232708 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Nostoc sp. PCC 7120 # 2 436 3 440 442 319 41.0 8e-87 MSIWLDILCLILLILLNGFFAMSEISIVTARRSKLQMLADQGASGAELALSLSENPTRAL STIQVGITSIGILSGIVGESALVDPLSNFFLDTLHIPAATARGASMAVVVILITYFSIVI GELVPKRIGQMGADAISRLVAKPIHWLAILAMPFVKLLSFSTEMLLKILGIKQDDQKITE EEIHSMIDEGGEAGVIDAQEHTMVKNVFRLDDRAVASLMVPRSEVQYLDLEDTREVNMEK VLNSQHSRLPVCYGGLDDIRGVVTTRLLLKQMVNDGKPNFKVNYEPVLYVPESISGMELL DTFRKSDAALAMVVDEYGAILGLVTPHDVLEAIAGEFKPDAPEDAQIIQKGENCYEVDGL LPIPELKDLLDIDEVPDEDKDRYTTVAGMVIFLLERLPRTGDRVKWDGWEFRVMVMDGRR LDRILITKLPSADDPKKKES >gi|301349788|gb|ADCQ01000062.1| GENE 89 103012 - 103512 279 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 15 158 758 899 904 112 45 1e-23 MNKEIEDKVKELSRRIVGTGQIVVTAESLTGGMISAALTSIPGASEWFERGFVTYTNQAK HEMLDVPQSILDRFSAVSTQTVSQMLEGAIRHSNATMAVAVSGIAGPDGAMPGRPVGTVF IGWKRKDEMAEVGRYEFKGHRQSVREQTVAVAIQGLIEMLDERQPS >gi|301349788|gb|ADCQ01000062.1| GENE 90 103509 - 104042 438 177 aa, chain - ## HITS:1 COG:PM0728 KEGG:ns NR:ns ## COG: PM0728 COG1267 # Protein_GI_number: 15602593 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Pasteurella multocida # 15 157 11 154 161 100 43.0 2e-21 MKSYKTTPPSFKTVLQHPWLWISTFFGSGCITPAPGTWGSFAAWGVFWLLDMWLGRSFIW AAALVIFVLGCISVGKSTVYLNKVDHGSIVVDEVVAVWVVLLLTPLGFWWQLSSVIAFRF FDIVKLPPASVVDRGRQNGFTVMLDDIFAAVYAILVINSMAWVAGFYGAASPNWILQ >gi|301349788|gb|ADCQ01000062.1| GENE 91 104039 - 105073 789 344 aa, chain - ## HITS:1 COG:RSc2768 KEGG:ns NR:ns ## COG: RSc2768 COG0611 # Protein_GI_number: 17547487 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Ralstonia solanacearum # 1 339 1 328 332 244 45.0 2e-64 MPEHPACTMTPNPLDEFGVISRFFTDRSFYPSAWPSQGAGDDCAFLDVGPMRLAVTADMM ALGSHFLENASPYTVGRKALAVNLSDLAAVGSEPKAFFLSISLPRIDENWLEGFSKGLLE EARRFNCPLRGGDTVKSFAKAGQTPYTAISITAMGELPAGKGLTRARARVGDDVWVSGTP GDAFAALGQIFGYWTFAEPLFGYFRSRMDLPEPRVTLGRGLLNVATACCDISDGLVGDLK HILERSGVSARLFWPAFPKSDAMELLPEAVQQRCVLSGGDDYELLFTASSHRREEIEQIA ERAGTRVSRIGEIVPAEEPLKIIDANGSGVACATSFNHFGEAGS >gi|301349788|gb|ADCQ01000062.1| GENE 92 105066 - 105545 590 159 aa, chain - ## HITS:1 COG:RSc0711 KEGG:ns NR:ns ## COG: RSc0711 COG0781 # Protein_GI_number: 17545430 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Ralstonia solanacearum # 6 153 8 157 161 156 54.0 2e-38 MDSNHTGAKSPAKKRGGRSARRRSREFALQGVYQWLMSHTDPEAIDAAALEAEDFDKADQ AFYRELLHGVTEEFPSLETSYAPHIDREVTSLSPIERAILLIGTYELKNTTTPYRVVINE AVELAKSFGGSDGFKYVNGVLDKMVPELRPYEVVKGKNA >gi|301349788|gb|ADCQ01000062.1| GENE 93 105535 - 106035 664 166 aa, chain - ## HITS:1 COG:NMA0886 KEGG:ns NR:ns ## COG: NMA0886 COG0054 # Protein_GI_number: 15793855 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Neisseria meningitidis Z2491 # 6 148 4 145 158 139 54.0 2e-33 MSIEFIKPNADGSDLKIGIVSARFNDWACDAMFASCYEELKAHGVKDENIVVTTVPGALE IPGALVMLYEGYPDLDALVAIGCVIRGETYHFELVANESSRGVTDFVMTEGISVANCILT VENEEQAKVRVQEKGADAARVALEMGNLRRFCGQRVMENYGEDNGQ >gi|301349788|gb|ADCQ01000062.1| GENE 94 106138 - 106746 946 202 aa, chain - ## HITS:1 COG:RSc0714 KEGG:ns NR:ns ## COG: RSc0714 COG0307 # Protein_GI_number: 17545433 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Ralstonia solanacearum # 1 199 1 203 217 199 53.0 3e-51 MFTGIIQAVGRIRDNEEIGDGLRIHVEAPELGLDTVKIGDSIAINGACMTVVEVDEKKFK VEVSAESLSKTAGLDGWGYVNLEKAMRLGDRLDGHIVSGHVDGVGEVDAFEKVAESYRLV VRCPMKLAKFLAYKGSVAINGVSLTINEVEDTPAGTRISINLIPHTFEHTSFKYTKKRDL VNVEVDTVARYIERMYSLTEHK >gi|301349788|gb|ADCQ01000062.1| GENE 95 106764 - 107855 1132 363 aa, chain - ## HITS:1 COG:RSc0715_2 KEGG:ns NR:ns ## COG: RSc0715_2 COG1985 # Protein_GI_number: 17545434 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Ralstonia solanacearum # 150 360 2 216 221 198 48.0 1e-50 MSFSDCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRD AASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKML EEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEE ARADGHFWRGISGAVLTGLGTVLADNPQMTARFEGVTRQPLKVVVDSNLSLNPDLKIFQG GKTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARL NGALAMEGLIDEYLIYVAPVFLGDGRRLLDLPSFKDLCEGVALEFTDIQKVGPDVRLMLR PVR >gi|301349788|gb|ADCQ01000062.1| GENE 96 107852 - 108325 505 157 aa, chain - ## HITS:1 COG:RSc0728 KEGG:ns NR:ns ## COG: RSc0728 COG1327 # Protein_GI_number: 17545447 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Ralstonia solanacearum # 1 132 1 131 149 139 53.0 3e-33 MLCPYCKEPNTQVIDSRTCEEGSAIRRRRKCPTCGARFTTYEKAALQMPLIIKKNGSVRE AYNSDKLRRSMQIALRKRPVKASELDSAISRIEKQLQVSGEKEVTSKRVGDMVMLELKKL DNVAYVRYGSVYFNCGTLDDMIKLVENAREDQGKEGK >gi|301349788|gb|ADCQ01000062.1| GENE 97 108347 - 109639 1680 430 aa, chain - ## HITS:1 COG:RSc0729 KEGG:ns NR:ns ## COG: RSc0729 COG0112 # Protein_GI_number: 17545448 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Ralstonia solanacearum # 9 426 1 414 415 593 71.0 1e-169 MAYLWEKHMFDKNSTIEISDPAVWEIIQKEGKRQEDQIELIASENYASPAVMAAQGSVLT NKYAEGYPGKRYYGGCEYVDEAETLAKERALKLFCEPVGVEMAVNVQPHSGAQANMSVFF GLLNPGDTVMGMSLAEGGHLSHGMKLNMSGKWFNVVSYGLNDKEEIDYDQVEKLAEENKP KIIIAGASAYSLHIDFKRFSEIAKKVGAYLMVDMAHYAGLVAAGVYPSPFPYADIVTTTT HKTLRGPRGGMIFCRPDLEKQINMAVFPGVQGGPLMHVIAAKAVAFGEALKPEYKEYQQR VIKNATAMADALTKRGLRIVSGRTESHVMLVDLRSKNITGKEAETVLHEVGITVNKNSIP NDPQKPFVTSGIRLGSPAMTTRGFKEDEAIEVANLIADVLDAPKNEQVLANVKERVASLV ARFPVYLETL >gi|301349788|gb|ADCQ01000062.1| GENE 98 109874 - 111628 688 584 aa, chain + ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 47 566 43 551 571 143 26.0 8e-34 MRALLIIRSVVSVVFSVFTALAAADDSKPVVTIGLIDTFSPEFYIYTYSPTLDHLIKSLP EFQFNIVEIDPERIESDIKKYKPAFLVSSSSTYVSLMESEGAHQVATREPKSSQDVAHTV ASAFIVPAESPILSLEESKGKTIAVSSKNSFDGWLIAKGEIAKLGDPNKFFKDVVETHHA FPDVTALLKSGFAEVGVLAACELERLRRSGAVQEGEFRVLNENQSHLGCSISTDLYPDAV FSSLPGVPSWISRKVAVSLLTMPSDKNDFQWTVANDFVPTYRLLKTLELGPFKPVSVWSF EAFVSHYKYQIVFSVFLLLLLSFHSVYVNALVRKRTAQLKNALVEREKFHTEARQNKERL DSMERLSVVSLLSSMVAHEIKQPITNISYYAGGLLMFLKKKGLEESTGSEFIKAIQSEVR RSTDIIDHVRGYAKERPKEFAACDLQSVVSGAIKYQQNPFLINKVKHSCWVFADKFDLEF IVSNFVKNALSAVAGTRRPKVEIYVEDEGTRWKLSVSDNGPELTDEQLGRLGKIGHSTKA DGLGLGLSIASAMAESNGGHLEFAKRPNGGLIASLVLSKFEEHQ >gi|301349788|gb|ADCQ01000062.1| GENE 99 111625 - 112248 430 207 aa, chain + ## HITS:1 COG:mll0983 KEGG:ns NR:ns ## COG: mll0983 COG4566 # Protein_GI_number: 13471099 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Mesorhizobium loti # 3 203 35 232 246 120 34.0 2e-27 MRKEPLVRLIDDDPTVLAAQSTFLRMADLKVLTYSSASEFLEKDDFSHPGCLVLDVRMPS MTGLELQDEMIRQKIDLPIIFLSAHGDIAMAVRAVQKGAKTFLVKPPNLEQLLEEIDSAI KLCFSIRDEKLLAQELQEEWNQLTEAEKKIAKLVAKGLSNQTIAEIQSVSEKTVRSQRAS VYTKLEVENAAELTNFLRDYEKIEHLL >gi|301349788|gb|ADCQ01000062.1| GENE 100 112245 - 113630 593 461 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 27 453 39 474 484 186 31.0 1e-46 MKRRNFVLFSLSLLPVTGLAQTERWDESADVLVIGGGAGGLSAALSVSSLGSKVILLEKM DLLGGDSLRSGGYFNAVTKKAVHAGSDSVEHFKRQIIDSGAGFSSPLLASVLAERSGESL EWLKAQGIKFLEEPRYIFGGLWKRAYKPLLPSGTGYIQALSERCLKKGVQIRTSCKVTKI LTAEGHNEVLGLEVEDHRGISRRIRAYKGVIIASGGFGANKDMLKSRANFTDNVGSDSHP GATGEILLLAEEIGAKLTNMPFVECVPGGDEKASDQVRLDYDPSGIMFVNEKGERFVEET LPRSEIYEAFRKQRVKRCFTIADSATVEQVDLYRRKNLFRGLYSHLTWRKDTLDELAAAL NIDAENLKESAEALTKRGKMMTPPYWAVKVSFKVHTTLGGLTIDPHARVLDVNEKPIKNL YACGQVVGNLHGKNRLGGNGINCAVTFGRIAAETIHKAAPI >gi|301349788|gb|ADCQ01000062.1| GENE 101 113750 - 115471 1869 573 aa, chain + ## HITS:1 COG:lin0374 KEGG:ns NR:ns ## COG: lin0374 COG1053 # Protein_GI_number: 16799451 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Listeria innocua # 193 566 175 500 506 94 26.0 5e-19 MTSSITASRRGFIKSTLAGVAAAASVPAFAASAPTPLPKKWDGEADVIVVGFGGAGATTS IVAAQNGAKVIVLEKNPQNRHLSNTRMSGGIFHCPFKDGDPKALKDYAQAMFSGENIPTK EEGEIPEYSEGLAQIWADLSPTNLDFLQSLDPAFIGGSQPGFNKASFPNFPGAKECKYNA YRATYTKRMKNFNQKSFDSPKEQTSSGEAFWRCLEEGVKKQGNKIQVYWETPASELLKNA KGEVVGVVAMQNGKPMYFRGKKAVVLCSGGYEYNKPMRQAFLEGPGVNGWAFYGTTSNTG DGIAMGMAAGAGLQKVGKSAARVIVPTQVTHNGLRLGSITPSVGSPNSIVVDNFGKRYEA ETKVTDNPSRYFFYKAAVSFDISALSYPRTPSWMIFDEKLRASKPLVGLGISVVGYGLVD WDEKNEKPLASGLILKADSIEELANLIKNHPENKGRMVPQNLVETVTRFNQFCDDKKDAD FGRRPATLGKIDKGPFYAMPLVAGGPNTKGGLLADADRKVLAWDGTPIPRLYSVGEIASA LKFVYQGGGNLTECLVYGRHVGKNVAALPDTTL >gi|301349788|gb|ADCQ01000062.1| GENE 102 115528 - 115869 291 113 aa, chain + ## HITS:1 COG:no KEGG:Sputcn32_0810 NR:ns ## KEGG: Sputcn32_0810 # Name: not_defined # Def: flavocytochrome c # Organism: S.putrefaciens # Pathway: not_defined # 37 108 37 107 589 76 43.0 3e-13 MRLRTLISLLLMFCCAAVQAQQTQFLADRHVARGMKCETCHTPDNKLKTSGDLDVCATCH GDYAAMIKKTDGKYEVNPHAQHEGALPCSECHQGHKEGKNYCGGCHNFVYKVP >gi|301349788|gb|ADCQ01000062.1| GENE 103 116207 - 116578 649 123 aa, chain + ## HITS:1 COG:RSc0494 KEGG:ns NR:ns ## COG: RSc0494 COG0316 # Protein_GI_number: 17545213 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 13 123 14 124 124 185 81.0 1e-47 MAENNVQDQEQIKLPDPIIFTDAASLKVKELIDEEGNPNLKLRVFVQGGGCSGFQYGFTF DETTNEDDAVMVRNGVTLLIDSMSYQYLVGAEIDYKEDLEGAQFVIKNPNATTTCSCGSS FSV >gi|301349788|gb|ADCQ01000062.1| GENE 104 116631 - 117737 1006 368 aa, chain - ## HITS:1 COG:RSc0495 KEGG:ns NR:ns ## COG: RSc0495 COG2377 # Protein_GI_number: 17545214 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted molecular chaperone distantly related to HSP70-fold metalloproteases # Organism: Ralstonia solanacearum # 9 368 16 386 386 331 48.0 2e-90 MCTPNIPIYVGMMSGTSMDGVDAVACVFNEKGCQFIARSFEPYSNMLRESLLSLCQSGPD EVFRMQNGANEIAKIYAKAFNKLLTDSGLNYKNIRAIGAHGQTIRHNPQIGASTQLINGA LLAELTKTDVITDFRSRDLAAGGEGAPLVPAFHKWVLSGDVPRGILNIGGISNLTVLPER GIDEEVLGFDCGPGNVLMDAWIEKVNHVRYDQDAVWARSGKVIPQLLETLKQEKFFSQVP PKSTGRELFNLPWLEARLNGEKPEDVQRTLVSFTAETVTDAIRNFAPHIKELRVCGGGAK NPLMISELALLNPDLLVTTTADLGVDPQDMEGLAFAWLAYRFDRRETGNLPSATGASGSR ILGCLYPA >gi|301349788|gb|ADCQ01000062.1| GENE 105 117786 - 119114 1312 442 aa, chain - ## HITS:1 COG:PA0667 KEGG:ns NR:ns ## COG: PA0667 COG0739 # Protein_GI_number: 15595864 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Pseudomonas aeruginosa # 63 435 78 444 447 193 31.0 5e-49 MKPFRTKFTKILTGLGVAAALLFSIPSPAVSQETALPGKGEVVLEKAGEIELGDLIQQWA SEMDHVYAETRIQAKDTNKKIFERLGINDKAFVRYVNSIKGKENPFARLQKGRLIQARLT PTGEVISLRVFRPIDSLSRDVAYFQVSKESGKFKHANLKSEIDAFPIASSAVIKTSLESA AVSANIPANVLTQVKERLSTSMDVNKGVAAGDSFSVIYERRQIDGADLGSGKLLAIEYFS KGKTIDSYWYEGEGVEGYFDSEGNNTDITFLRMPCEARVTSTFNRVRKHPVTGRLRPHWG VDLGAPRGTPIYAAGDGVISSKKYQRRGYGYWLEITHAGGYKSLYAHLSKYASGMAEGVR VKKGQLIGYVGTSGMVTGPHLHYELKKEGQQINPLIADLRTGENLKEDALEDFKLAISPM RRQIAMLSRLQLAQNSASTGSD >gi|301349788|gb|ADCQ01000062.1| GENE 106 119298 - 120542 360 414 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 54 413 41 416 418 143 29 5e-33 MTDTAQEKKFPVTEDIKEAMALIKRGTDTLLVEEELEQKLARSKASGKPLRIKLGLDPTA PDIHLGHTVVLNKLRQFQNLGHTVIFLVGDFTSAIGDPSGRNTTRPPLTREQIEANAKTY LDQAYKVLDKDKTEVRFNSEWCNKLGSAGFIKLASRYTLARLLERDDFAKRFASQAPIAM HELIYPLMQGYDSVALEADVELGGSDQRFNLLVGRELQRQYNQEAQCIITMPLLVGLDGV NKMSKSKHNYIGITEEPNEMFGKVMSLSDDLMWNWFDLLSMRSNEEIQQLKNECEAGRNP RDAKVMLAKEIVTRFHNAEAADAAEQEFINRFRKGAVPENIPEVTLENNGEAMGILKLIK EAGLAPSTTEAGRNVTQGGVHLNGKKVTDKALQVQPGTYTLQVGKRKWAKVTLK >gi|301349788|gb|ADCQ01000062.1| GENE 107 120552 - 121004 448 150 aa, chain + ## HITS:1 COG:ECs4810 KEGG:ns NR:ns ## COG: ECs4810 COG1490 # Protein_GI_number: 15834064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Escherichia coli O157:H7 # 1 143 1 143 145 168 60.0 3e-42 MIALIQRVSEASITADGEFRGSIGQGLMVLVCGEKNDKLEYADALAEKVVGYRVFSDAEG KMNLSLKTVGGGILVASQFTLAADTNSGTRPSFSPAADPVLGEALYERFLEKLRALGFNP VTGVFGAHMQISLVNDGPVTFRLCYPKKKD >gi|301349788|gb|ADCQ01000062.1| GENE 108 121013 - 121666 632 217 aa, chain + ## HITS:1 COG:XF2170 KEGG:ns NR:ns ## COG: XF2170 COG1881 # Protein_GI_number: 15838761 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Xylella fastidiosa 9a5c # 9 212 5 201 204 158 41.0 6e-39 MDTIFRVWSDSFEDGKPIPEGFAFAKPDPMGKEHTLPAGNRNPQIAWSNPPLGTKSLIVI CEDNDVPADFSKANVEGETIPADAPRTSFIHWVLVDIVPEEPCIDAATLSKGISPRGKRG PACANGMRQGLNDYTDAFKGDPNNEGHYYGYDGSCPPWNDERVHRYVFTVYAVDFPLLPL KGNFNGRDVKEAMKGHILASASTVGTYTLNPKLLKNS >gi|301349788|gb|ADCQ01000062.1| GENE 109 121724 - 122782 900 352 aa, chain - ## HITS:1 COG:PA0662 KEGG:ns NR:ns ## COG: PA0662 COG0002 # Protein_GI_number: 15595859 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Pseudomonas aeruginosa # 4 352 2 344 344 356 53.0 4e-98 MKKVKVGIVGGSGYTGIELLRLLAQHPHAEVVTITGRKDAGTHVAKMFPSLRGRVDLVFE DPASAPLDQCDVVFFATPHGVAMSMAEKLTSKGVKVIDLAADFRLKDKEVFKKWYKMDHK CPEILAKAVYGQPESMRDEMKKANVLGMAGCYPTTIELGLMPLLKLHKEVGDIINLDVSI IADSKSGISGAGRKADISLNCAEFSDNFKAYGVAGHRHEPEMIQQLSLFAGETVPLTFIP HLLPNIRGIFSTIYVRLKENGKSIDYQALYEKAYVDEPFVDVLPEGSLPETRMVRGSNMV RIALYRKEPDLLVVLVVEDNLVKGSAGQAVQAMNLVMGLPETEGLEQIALVP >gi|301349788|gb|ADCQ01000062.1| GENE 110 122954 - 123346 546 130 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|187479439|ref|YP_787464.1| 30S ribosomal protein S9 [Bordetella avium 197N] # 1 130 1 130 130 214 81 1e-54 MIGNYNYGTGRRKSSVARVFMKRGTGKIEINGRSLDEYIHRETGRMVVRQPLILTDNVET FDIKVNVRGGGESGQAGAIRHGITRALIDYDAALKSVLSQAGLVTRDAREVERKKVGLRK ARRRKQFSKR >gi|301349788|gb|ADCQ01000062.1| GENE 111 123350 - 123778 614 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15677879|ref|NP_275047.1| 50S ribosomal protein L13 [Neisseria meningitidis MC58] # 1 142 1 142 143 241 80 2e-62 MKTFSAKPLEVKREWYVVDATDKVVGRLAAEIALRLRGKDKPEYTPHVDTGDYIIVVNAD KLVMTGAKAEDKKYFRHSGYPGGVYETTFRKMQEKHPGRALEIAVKGMLPKGPLGYAMFK KLFVYAGSDHKHSAQQPKQLEI >gi|301349788|gb|ADCQ01000062.1| GENE 112 124013 - 125476 1499 487 aa, chain - ## HITS:1 COG:DR1019 KEGG:ns NR:ns ## COG: DR1019 COG0578 # Protein_GI_number: 15806042 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Deinococcus radiodurans # 24 462 23 475 522 314 40.0 2e-85 MDFNAKTNPGRESRLQQLEEDKVWDVLIIGGGATGAGIAVDAAARGFSTVLFDTQDFSEG TSSRSTKLIHGGVRYMKNPRDWKLVREAMIERKLLLGNAPHIVHPEPFILPCYENFEREY YMAGLCLYGAMAYGGYEVGKTEFLSAAETIRRLPGVKADGLKGGVQFWDAQFDDSRLNIA LMKTAEARGALLLNYVPVVGFERGCGGEITVVKVKDKFSGKEYSVKTRMVFNAAGVWADE IRRMVSPEVKPFIRASRGSHIVVSTDHFGGKTGMFIPKTSDGRVLFCIPWHGVLEIGTTD KEEKDISFNPEPTEEEIEFMLETACKYLAYPLSRKDVLASFAGLRPLFNPNAGGSTAAVS REHSVIPEFKNMITVTGGKWTAYRKMAEHAMSVAVDQGLIYKRPCPTKYMSIYRDNEFNP DELEAEVLKGTLTDEQLKAYAVHCRDTQFAMTPEDVLYRRLRIGQMNKAKTEELLPKIKD VFEAEAS >gi|301349788|gb|ADCQ01000062.1| GENE 113 125479 - 126978 1027 499 aa, chain - ## HITS:1 COG:DR1928 KEGG:ns NR:ns ## COG: DR1928 COG0554 # Protein_GI_number: 15806927 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Deinococcus radiodurans # 6 498 5 496 501 589 58.0 1e-168 MYGTTELIASLDLGTTSARAIIFNAEGRPLAASQKPLTQYFPHDGWVEQDAEEIWQKQKE CLLGTLADLKLSGSGLRALGITNQRETTIVWSKKTGKPIYRAIVWQDRRTAAFCERLHDS GLEPLIHDKTGLCLDPYFSASKVRWILDNVEGAREKALAGELLFGTVDSWLIWNLTGGLG HVTDVSNASRTLLFNIHNCRWDEELLDIFGIPASMLPRVVPSSGLIGRTAPAILGAPIDI CGAAGDQQAATFGQACFKPGMTKNTYGTGGFLLMNTGSTPKLSDNRLLSTIGWTIPGATS YALEGSVFVAGAVVQWLREGVGLIDTSAEIESLARQVKDNGGVYLIPAFVGLGAPYWDPH ARGLMIGLTRGTTRAHIARAALESITFQCNDVLRAMMNDAGARLTELRVDGGASENDLMM QFQADISGVPVVRPEVVETTALGAAYLAGLGCGVWKSTEEIEKLWRRERTFEPTMSQDQR EFLTTQWGRAVARSKGWEQ >gi|301349788|gb|ADCQ01000062.1| GENE 114 127421 - 127732 190 103 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74317465|ref|YP_315205.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Thiobacillus denitrificans ATCC 25259] # 1 101 1 102 189 77 38 3e-13 MKLPLQVSFHGIDRSEALENLIAKEVEGLHKFDADLISCRVAVESEGRHQNQGRECSVRV SLNAPGHEFIMNTKNEDAHAAVRAAFDSLARQVKDNAAKRRGN >gi|301349788|gb|ADCQ01000062.1| GENE 115 127983 - 133553 5556 1856 aa, chain + ## HITS:1 COG:RSp0994 KEGG:ns NR:ns ## COG: RSp0994 COG0178 # Protein_GI_number: 17549215 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Ralstonia solanacearum # 11 1841 6 1929 1945 2175 56.0 0 MQTKNNAKEFISVRGAKQNNLKNIDVSFEHGKLTVVTGVSGSGKSSLVFDTLYAEGQRRY VETFSPYVRQFMDRMDRPKVDKVEGVPPAIAIDQTNPVRNSRSTVGTMTEINDHLKMLFS QASSLYCRCCGRPVREESPQDIWEDIAERLENVSPDARLSVCFHVHVPASLPPETAIAGL EAQGFTRCTVVSQNKTNGSDIEVIADRFKPSVPRSRAVEAVETALRLGKGLMELKVRVPG SEEEVWKFSAALTCPECGITYARPHDSTFSFNSPLGACDTCRGFGRIIGVDYGLVIPDES LSIKEGAVKPWNTESYSECKDDLLRYAAERGLDVSKPYRDLTQEEKDWVCFGDPKWTSFR SKKWYGIKHFFEWLETKAYKMHVRVMLSRYRSYTACPDCHGARLKPDALLWRIGTKENAD HALGSHQRWRPANATFSDAILRDLPGLNIRDLMLLPIERLRIFFDELKLSPALEEGCGML LDEIRSRLRYLTEVGLGYLNLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGL HPQDMDRVNSVMKRLRRAGNTLVVVEHDPQVMLAADRIIDMGPGPGANGGRIVFDGTPEE LKKARTLTGSYLRGERTFPHSAQKRINPANPALVLLGASEHNLKNLDIRIPLHSVVCIAG VSGSGKSTLVQDILVPALMKAKGKSTEAPGKFEKLLGTENISDVSFVDQSPIGKTTRSTP ALFMGAFETIRRLFAASPEAKKRKYEAGTFSFNSGTGRCPACSGSGFEHIEMQFLSDVYL SCPECKGTRYRNEILEVKLSRNGKEANIAEVLDMTIAEAIEFFKENKEIVRNLEPLVKVG LDYLKLGQPIPTLSGGEAQRLKLAKHLADALKGESKHTLFIFDEPTTGLHFDDVFKLMKS LQELVQSGHSVLLVEHNLDVINASDWIIELGPEGGERGGRELFAGTPKDFRIKDTPTGLA LAAYNKALKEKNPSAYFTDFKPQEEPKALSYPKDAITVVNAREHNLKNLSLQIPRNKFTV VTGVSGSGKSTLAFDLIFNEGQRRYLESLNAFARSMVQPAGAPDVDAIYGIPPTVAIEQR TSRGGQKSTVATMTEIYHFLRLLYVKLGTQYCPTCNVPVIKQSKDQIFASIMKTYKGKEI TFLAPLVKNRKGFYKDLAVWARNKGYEHLIVDGEKVSTLRFPSLSRFTEHNIDLPTGTVK VTPENEGEIKQLVAVTLDFGKGILDIEQKGKKRTFSSTSNCPNCQKSFPELDPRLFSYNS KHGWCPTCMGNGFKPFQNALAVDENTGELTAEAMSEELVICPDCHGQRLNLVALNVRFND KSIAEVAAMTIDQAADYFNTIELTGRQADIARDALQEIRSRLSFLKEVGLSYLNLDRSAP TLSGGEAQRIRLASQLGTNLQGVCYVLDEPTIGLHPRDNKILLSALEQLTSKGNSLLVVE HDEETIRSADHVIDIGPGAGTRGGQLIAQGSVEDIEASEKSLTGYYLKHPLQHTCKAKRR TLKSDPMITVQGANSHNLKDVTASFPLKRLTVLTGVSGSGKSTLAREVFLKNMAALVREK GKSVPTPEGCKGISGWETVDRILEVDQTPIGKTPRSCPATYIGFWDDIRKLFAQSEEAKA RGYTASRFSFNVKGGRCEACEGQGIKTLEMSFLPDVKVHCDVCDSMRFNEETLEVKWKGK SIGEVLKMEVDEAVEFFASVPSILHPLKLMQDVGLGYLTLGQPSPTLSGGEAQRIKLVTE LSKVKDDIRKGGRKLPETVYVLDEPTVGLHMADVDKLIKVLHRLVDAGNTVIVIEHNLDV IAEADWIIDMGPEGGSQGGKNVFAGPPQRLLRASTHTAEALKEFMETAKLKKTQSA >gi|301349788|gb|ADCQ01000062.1| GENE 116 133680 - 134186 319 168 aa, chain + ## HITS:1 COG:no KEGG:Bmur_0604 NR:ns ## KEGG: Bmur_0604 # Name: not_defined # Def: transcriptional regulator, MarR family # Organism: B.murdochii # Pathway: not_defined # 11 131 8 128 146 64 33.0 1e-09 MSDQYEKGVLKVLRYVYNQMERCRNADFDALGITSSQASVMMFLFKNRKHEVTQQSVQAA LLLSHPTITGLMKRLEAKGFITRKNSPADFRCKYVKLTKKGCDIERGLKTNMKRMQDRAL VGLSQEELDNLEKSLCVIAENLRKEEDMLAAERIIQDIKERTKEEEKD >gi|301349788|gb|ADCQ01000062.1| GENE 117 134246 - 135382 1235 378 aa, chain - ## HITS:1 COG:RSc2417 KEGG:ns NR:ns ## COG: RSc2417 COG0795 # Protein_GI_number: 17547136 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 1 376 7 400 401 224 31.0 2e-58 MKIVSRMIFAQIMKSSLFVLLTLVALFAFFDLIGQSGNIGTSYSMGQAFLLTALILPTRC YEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAYLLGNLV APPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLRPGEAAY DWVVYVFDRPDHLTSIVTAKSGTYSEQEGWVLHDVVEETVPTLPKESREQTQARVERKVM KSMVWGKSLDGNIFGLLMIKPEDMSLQELHYYIEYLKENGQTYKRFDTAFWSKAFYPLAI LVMLLLSMPFAYQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDSVPSIISAILPS VMMTLAAIIAMWYVERRS >gi|301349788|gb|ADCQ01000062.1| GENE 118 135379 - 136473 794 364 aa, chain - ## HITS:1 COG:RSc2416 KEGG:ns NR:ns ## COG: RSc2416 COG0795 # Protein_GI_number: 17547135 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Ralstonia solanacearum # 1 328 21 346 372 224 37.0 2e-58 MLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALISLALFLAVFMTLNRYW RDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDRFAQKE DISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELKKDGSRSVLVSDRGHIENKP NGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVGANKKLNAMPIEDLIKRT DNRAASELFWRISWPLVALNLALLAIPLSYNNPRSMKYYGQTAAVLIFILYLNALSIFQT WITQGKVGILGATLYMNVPVAVLTTFLFYRLMTINQGRFDAFIYWLQKPFRALAGKFKRK KETP >gi|301349788|gb|ADCQ01000062.1| GENE 119 136654 - 137682 620 342 aa, chain - ## HITS:1 COG:AGl359 KEGG:ns NR:ns ## COG: AGl359 COG4608 # Protein_GI_number: 15890292 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, ATPase component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 339 25 338 349 360 56.0 2e-99 MRNDNVKCTQSVLVKVQDLKKYFDVSPSLLTRVVERKPRALLKAVDGVSFEIRRGETLAL VGESGCGKSTTARMLVGLDKPTAGTVEVDGKDLYASRGKDEKLVRGKIQMIFQDPYASLN PRWKVGRIVAEPIIAQKVIKDPKEIENRVNSVLHLVNLSKEGKDKYPHQFSGGQRQRISI ARAIAIHPEFLVCDEPTSALDVSVQAQVLNLMQNLQREVGLTYLFISHNLSVVHHISDRV GVMYLGRLVELADKRTLFNEPRHPYTRMLLDAIPDLSQTHRRRTPISGEVPNPLSPPTGC PFHPRCPLANERCRKEMPLRQMIDSHGSFAEVACHAAEEGRL >gi|301349788|gb|ADCQ01000062.1| GENE 120 137679 - 138713 567 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 6 317 11 324 329 223 40 5e-57 MNHQPLLEVRNLKVEIPTRKGTLIALEDVSFSLKTGEILGVVGESGAGKSMVGNSIIGLL GKPAHITHGEILLEGKRIDNLSDDEMEKIRGKSIGAIFQDPLTSLNPLFTIGDQLIETIR IHSNLSEKEARERAIRLLEATGVPAADKRMDNYPHQFSGGMRQRVVIALALSADPKLIIA DEPTTALDVSVQAQIIELLKKLCEENGTAVILVTHDMGVIAETADRVAVMYAGRLAEIGP VEEMIHDAEHPYTIGLMGSIPKIGDEQDRLSQIPGAMPHLTEVPSGCAFHPRCPLAEERC IRERPGLQPCGNKLVACWKAGRQNKRMQFPQEPFTIRAPEDMPR >gi|301349788|gb|ADCQ01000062.1| GENE 121 138719 - 139594 798 291 aa, chain - ## HITS:1 COG:AGl366 KEGG:ns NR:ns ## COG: AGl366 COG1173 # Protein_GI_number: 15890296 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 291 26 315 315 324 57.0 1e-88 MWKFLHSPAAIISFVICAGLLLSAFFASWIAPYDPFDLTAFDLSDAFLPPAWMEGGKWQF LLGTDDQGRDLLSAILYGLRVSLEIGLSSVFISVALGVSLGLISGYAGGITDAVIMRFCD VMLSFPAILLALLIDGIIRVILPENMHDQAAYGVLIFAISLSGWVRYARTVRGATLSEKK RDYVQAAKLFGVSPTRIMFTHILPNVLGPVLVLATVQVALAIITEATLSFLGVGVPPTTP SLGTLIRIGNEFLFSGEWWITIFPGVALILFVLSVNMLGDWLRDALNPKLQ >gi|301349788|gb|ADCQ01000062.1| GENE 122 139644 - 140861 1000 405 aa, chain - ## HITS:1 COG:RSc2871 KEGG:ns NR:ns ## COG: RSc2871 COG1473 # Protein_GI_number: 17547590 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Ralstonia solanacearum # 19 394 11 393 396 314 43.0 2e-85 MNSVNLDKYSDPFFLGETKEELRRIRQDFHVHPEIGLVTPRTSRIIADLLKDYGVDEVHE GVGGDGVVGVIYGKLPGEASVGLRADIDALPLKELSNHDHVSQVEGAMHACGHDGHAAAL LGAAKKLASERNFGGKVVLVFQPGEEGWSGAKHMMEDGLFERFPMQEIYAFHNSSAIEPG RIALNYGAMQAAADAFTIVVKGKGGHASRPNLNHDPVIAAAHIILALQTIVSREVDPLET AVVSCCSLQAGDPRAQSVCPDSCQIVGTARTFSPEVRDLVEKRIGEISASIAVGLGCTAE TDYGRFYPPCINTPEQAAFMADVAAGFVGEENVDRNYPRMAGGEDFAFMLEKVPGAYIRI GQGGASAHNPYFDFNDEILPLAASVLAATAEKRLQKLNGGGNSAE >gi|301349788|gb|ADCQ01000062.1| GENE 123 140867 - 141847 312 326 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 1 321 1 315 320 124 25 2e-27 MFSFVIKRLLQAILVMLIVTLIAFLLFQFVGDPVTQMLGQEATEADRLALTHELGLDQPI WKQFGAFIANTLHGDFGMSLRQGAPVVDLFKEKMPATLELAFFSAMVATLIGIPLGVFVA LKRNSIWASWLMGLSLVGISLPTFFIGILLILVFSVWLGWLPSYGRGETVAFGWWTTGLL TGDGLKHIILPAVTLAIFQIALVMRLVRSEMLEVMRTDYIRFARARGVPKRKIFFRHALK NTLLPVITITGLQIGGIIAFSIVTETVFQWPGMGLLFIQAVQFADIPVMAAYLCLISLIF VVINLIVDLLYLAVDPRLKSDAANKE >gi|301349788|gb|ADCQ01000062.1| GENE 124 141909 - 143504 1785 531 aa, chain - ## HITS:1 COG:SMc02417 KEGG:ns NR:ns ## COG: SMc02417 COG0747 # Protein_GI_number: 15966346 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Sinorhizobium meliloti # 12 521 9 508 520 308 36.0 2e-83 MRRLVAIAMTCAAMGIGISSGAYAATFKWASQGDILTFDPHAQNEAFNNTANSYVYEALV NLNKGKVTPSLAESWTSVPEGFVFKLRKGVKFHEGETLTAEDVAFSINRALHPISQFKTF TAGILGAEALPNGDVLIKTINHSPVLLNQLAYLRILNKAWAEKHGATAPQNFVAKEEAYA AKHANGTGPFKLQSREVDIKTVFVENPDWWNKANKVGNVTEGIYTPIKSAATRMAALLSG EVDFVPDPATQDIQRLKNNSKVKLQSGPELRVLMISLDQMRDESPYVFVDGKKTDKNPFK DIRVRQALYQAIDIKTLQRAVMRGFSIPNGTIVSSETNGWSAKAADRLPYDPQAAKKLLA EAGYPNGFEFTLDCPNNRYINDEAIGKALAGMWAKIGVKVKVNAIPRANYFPKVLRYDSS VGMVGWGASTQDALFPLQSLVETVDVKKGNGLSNIGRVSDPELDALIEKIKEEEENFDKR NELIEQALLRVNKNIYVLPLHTQVINWALKKNIDAPLRADDRLELDKVVVK Prediction of potential genes in microbial genomes Time: Fri May 13 07:08:33 2011 Seq name: gi|301349787|gb|ADCQ01000063.1| Burkholderiales bacterium 1_1_47 cont1.63, whole genome shotgun sequence Length of sequence - 10758 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 409 - 1320 620 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1374 - 1433 2.9 2 2 Op 1 . + CDS 2001 - 3122 429 ## Cbei_1299 hypothetical protein + Prom 3139 - 3198 4.2 3 2 Op 2 1/1.000 + CDS 3219 - 4583 988 ## COG0305 Replicative DNA helicase 4 3 Tu 1 . + CDS 5458 - 6573 587 ## COG5527 Protein involved in initiation of plasmid replication + Term 6582 - 6617 5.1 + Prom 6612 - 6671 2.6 5 4 Tu 1 . + CDS 6744 - 8093 756 ## COG0477 Permeases of the major facilitator superfamily + Term 8100 - 8141 7.3 - Term 8078 - 8138 21.0 6 5 Op 1 25/0.000 - CDS 8156 - 9133 751 ## COG1475 Predicted transcriptional regulators 7 5 Op 2 . - CDS 9136 - 9906 776 ## COG1192 ATPases involved in chromosome partitioning - Prom 9937 - 9996 5.0 - 5S_RRNA 10569 - 10639 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349787|gb|ADCQ01000063.1| GENE 1 409 - 1320 620 303 aa, chain - ## HITS:1 COG:CAC0875 KEGG:ns NR:ns ## COG: CAC0875 COG0697 # Protein_GI_number: 15894162 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 6 291 14 299 306 173 36.0 4e-43 MLKILKGVFLAAFAGCCWGSMAVAAQYLFTNCGFEARHLTTLRLIGAGVLLLVLQAAFGG FQSILKPFKEKRNIRDVLIYGVGVLLIQYTFFLAIEQSNAGTAAIMVGVGPLFIIGYLAI CKHRKPVPKEFFCLFLAISGVSLVVTKGNFESLDFVSTGAFWGLLSSAFGAFCTVQPKNV ISRVGVSNVVGWGMVVGGSIACLFTNPFAMDVHWTLPSVLCYFQIIAFGTVAAFWCYLKS TEYVIPSITAILGSFEPLSAVALSVIILGATFNSYELLGATAILANMLILAWPSKDTESL TAN >gi|301349787|gb|ADCQ01000063.1| GENE 2 2001 - 3122 429 373 aa, chain + ## HITS:1 COG:no KEGG:Cbei_1299 NR:ns ## KEGG: Cbei_1299 # Name: not_defined # Def: hypothetical protein # Organism: C.beijerinckii # Pathway: not_defined # 6 336 13 338 379 172 34.0 2e-41 MTDAKYVKKAPRQSNLELSRILAMYLIVMHHFSVHGGVPIWSGSAPLSFNFYLDQLLSTG GKIGVNLFVLITGYFLAKKFSKFSSLIYLWIKTFSYVIVFFLLFCALGLHPFNWSSLISC FFPIRNDFYWFVSAYFLLILLSPFITIGIKALGQRKLFTFLLIFGFFWSVIPTLTTKPEY YGSTLFWFVYLFSWGAFLRDYLERKIFSQSLCLSVCGASWGIIAIIIALADWNNRVGTFI GYIDWFTFANLYSVFSLICALSLFVFFKQMQIGYKPWINKFAAAMFGVYLIHENPIVYPW LWSKVFHVPEYLGSSWFILYALAVITIVFFICAILDLIWEKVLQSGYQKYLFPRLQPLDK RVTDFLNAPASQK >gi|301349787|gb|ADCQ01000063.1| GENE 3 3219 - 4583 988 454 aa, chain + ## HITS:1 COG:RSc1311 KEGG:ns NR:ns ## COG: RSc1311 COG0305 # Protein_GI_number: 17546030 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Ralstonia solanacearum # 4 453 17 466 473 296 36.0 5e-80 MSAPIIDSLPLPPHSPEAEHALLGALLANPESFHLIEPPLEPSDFYNYANRLIYQAIFSL ASQGKPADVLTVSDLLREIGNEKETGGLEYLNRLTESYASAANLSEYARIVKDKALKRNL ISKLAQLEAEVNSDRGASSEDLLDRVQSEFLKMGLGKNKDASSFESSGSILDGVIDEMRS IADSPTEIRGCESGIEQLDDVTRGFRPGQLVVIAARPGIGKTAFALQVARRTAVRQKKPV AIFALEMTKNEVLKRMLSSESEVEMESIDGAQMTDTQWSRIYQAQEVLSKAPIFVDSSSE LTLMRIKTKLRQLAAQVGNIGLVVVDYLQLLEQEDENASADLRSIQIGVLSRGLKLLAKE LNAPVLLLSQLNRQVENRPNHTPLLSDLRESGSIEQDADMVLLLYSKAKFGQEQGDSRTI YMDLAKHRNGRLEVFSTIFKGEIQCFEELNAWNQ >gi|301349787|gb|ADCQ01000063.1| GENE 4 5458 - 6573 587 371 aa, chain + ## HITS:1 COG:NMB0495 KEGG:ns NR:ns ## COG: NMB0495 COG5527 # Protein_GI_number: 15676404 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Neisseria meningitidis MC58 # 91 302 19 227 327 67 26.0 3e-11 MVSENQQQEFELLTDDDDWSDSPKAGKKNSLWNTNAVVVKSNDLLTAKTNLTLNELRIIL VAISKIDSMNPEVRGDASYWVSAKELREIGSERSKAYKYLQNAVNTLYNRSVIRTFGSNG KERDEFRWISKVSYRSGMIGLTFSQEVLPFLTRIRSNFIRYPIKQISELKSVSTLRFFEL CVRWRGQVKKMTITELKDILNIPQKKLNGDVARIVRECAAKINEATKIDFHVECEFVRTG RKFTHIIFSVKNRPNILVERTQSVPPEDVPDVRDLVGYTDEDWQNLTLSDSQRNYFASLL SRHNDGGVGNRFAGEFINAAGREGYSQESWKRWIENRLADPKFVYEARVYLHDLGFKPLS AVKKNVKKTTN >gi|301349787|gb|ADCQ01000063.1| GENE 5 6744 - 8093 756 449 aa, chain + ## HITS:1 COG:SSO3180 KEGG:ns NR:ns ## COG: SSO3180 COG0477 # Protein_GI_number: 15899884 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Sulfolobus solfataricus # 4 444 13 448 471 109 26.0 1e-23 MVYLDTMPLRFGHFRVLITTAMGQFLGAAVATLSGVLIPLLAIVQHHELDSVTQGLIASM ELIGIMVGSFVIGKLADKDGYLPFLRLSSILVFIGALVVYVTGSIDLLIHSLFVMGFGIG GDFALDSDYVDEVMPKRWQETMVGITKSFSALGNLSAGGGFLVLCSIEWTAEIWRQIFLF VVFLSFLMIISRLFFFKSPGFLIAKGKFDEARQVVKAMLGPDVEIPPSYLGKTSSSNGAK VDLFKGETLQKVIFSGVPWGCSGLGVYGIGIFLPILIMSLGISGFDTSKLGPLGSVMNSV NLTFIISWFILIGFIAGLFILHKVSTVKQQFYGFLLAAAAVLLLLLCYLFKWPAAISIAA FVLFELALNAGPNLTTFIIPSLVFPLDIKAEGAGYAAFFGKFGAVIAVFSFPILMKLGGV SLALVVSVAVLGLGAFLTYFYAKKLGLEK >gi|301349787|gb|ADCQ01000063.1| GENE 6 8156 - 9133 751 325 aa, chain - ## HITS:1 COG:SP2240 KEGG:ns NR:ns ## COG: SP2240 COG1475 # Protein_GI_number: 15902043 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 57 196 26 164 252 73 33.0 4e-13 MKTFKVTKAKTQTFKPTNIKSLTEFNGAIAAGVNGKVLTKLPVESIEVRPQVRTVIENID ELAESMKSGQLMPITVIKGENNKYVVLQGERRWLAAKKAGLETVEAIVVDAPVSDSERIF GQLTENIQRDNMKLQDLIQSISQLIQNGFNQTEIAARLGKDRTYISRIAALASSKKEVLK LIVDCAVNDAQTAQILNNICEKSTNIAKDLEACKDKDGLISRGSAQAVLDRLQKIVPQKP KKVVAFEDRLKKKDFPRGYRRVPAGKALGIQVEFLDEAGEKVSGNLLPRLLSDRHDEVCV LREDNKTVVAVPVDKIRIRMIDELA >gi|301349787|gb|ADCQ01000063.1| GENE 7 9136 - 9906 776 256 aa, chain - ## HITS:1 COG:XFa0060 KEGG:ns NR:ns ## COG: XFa0060 COG1192 # Protein_GI_number: 10956770 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Xylella fastidiosa 9a5c # 3 228 2 225 254 114 33.0 1e-25 MGKVIAFANQKGGVGKSTLTVQAAFYLRKHRKKKVLVIDIDSQGNTTESLTQGQPYTATS SAALFEPNLEELGIFDDTPYGVDLIGSEPNSNEGYDIESRELDVIRNPAANIQALKDAYD YILVDCPPSLGRKLLGGLVMADYVICPIKLSGYAVGGVSGMVNTIRAVQQNFNPSLKFLG VVVNEYDDSASAKSTLQYLVSETNCDIFNSKLRHRAPIDAATTMGIPVDEIRNGKRSYEE LEAVYKEMLARIKKIG Prediction of potential genes in microbial genomes Time: Fri May 13 07:08:45 2011 Seq name: gi|301349786|gb|ADCQ01000064.1| Burkholderiales bacterium 1_1_47 cont1.64, whole genome shotgun sequence Length of sequence - 2205 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 62 - 121 6.5 1 1 Tu 1 . + CDS 148 - 1902 1069 ## COG5421 Transposase + Term 2002 - 2040 1.1 - 5S_RRNA 2081 - 2151 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349786|gb|ADCQ01000064.1| GENE 1 148 - 1902 1069 584 aa, chain + ## HITS:1 COG:MA2942 KEGG:ns NR:ns ## COG: MA2942 COG5421 # Protein_GI_number: 20091761 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 61 574 31 519 521 72 22.0 2e-12 MGRPRVYDTPHFCLHTYVRKGHTYVEAYRNEWDPEKKRSRIAQRKYVGALDTETGRVRLG KKYLSENPQYEGKILYYEDKQLVERTPEEVQEELNQRVPSPLNDIVSYGASAACWLVAQQ SGMLEDLKETFGAEIGSDLLRLAIYQYLDGGSMDCFEQWASQHWLPRARIFSGRRISEML SEITHQDITSYLKLRNQRCVEHFNSVKTQAEKLKKTGPRFRYLALDSTALSTYSVTISNA AYGYAKQNPELRQVNFTLGVDYLNGDVCYAYESEGSITDKSVYPHLMMDLHHNGYNLQDT VIVTDRGYQSIYNIQRLLDIEINYVCGVPLTEESVRQLFEKYKSSLSNPAFLNGRLKVAA RTTEELWAKATDFGPLRLSTSLHLYKYPELAALQAISLHQKVEEVLEKKNSGEKVHPADW SRVKNYIVENRQKVWVKNIKGLEEFLTRAGCFAIRTNCIKDPFECLAVYKQRQIVETAFR QMKVLNGNNRLRCTERTYVGKLLLFVIAQSLRMRMLYTVKENEQKLDLDLPGDSLDKAMA MLKGIMAVRPPSKSVWAGRPISKKARDILELLGINNKFPRNLKD Prediction of potential genes in microbial genomes Time: Fri May 13 07:08:48 2011 Seq name: gi|301349785|gb|ADCQ01000065.1| Burkholderiales bacterium 1_1_47 cont1.65, whole genome shotgun sequence Length of sequence - 3687 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 119 - 189 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. - LSU_RRNA 321 - 1452 92.0 # CP001043 [R:1345425..1348306] # 23S ribosomal RNA # Burkholderia phymatum STM815 # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia. + 5S_RRNA 3609 - 3680 98.0 # AE017194 [D:4654188..4655695] # 5S ribosomal RNA # Bacillus cereus ATCC 10987 # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. Prediction of potential genes in microbial genomes Time: Fri May 13 07:08:53 2011 Seq name: gi|301349784|gb|ADCQ01000066.1| Burkholderiales bacterium 1_1_47 cont1.66, whole genome shotgun sequence Length of sequence - 2105 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 20 - 193 64 ## - Prom 303 - 362 32.1 - TRNA 76 - 151 94.4 # Ala TGC 0 0 - TRNA 167 - 243 94.2 # Ile GAT 0 0 - SSU_RRNA 360 - 1848 99.0 # DQ905669 [D:1..1491] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Predicted protein(s) >gi|301349784|gb|ADCQ01000066.1| GENE 1 20 - 193 64 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVRVHQDPPWHFLRGGIAQLGEHLLCKQGVNGSIPFTSTTRYTGKSKNKMKELYGAF Prediction of potential genes in microbial genomes Time: Fri May 13 07:09:45 2011 Seq name: gi|301349783|gb|ADCQ01000067.1| Burkholderiales bacterium 1_1_47 cont1.67, whole genome shotgun sequence Length of sequence - 89151 bp Number of predicted genes - 72, with homology - 69 Number of transcription units - 49, operones - 16 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . - CDS 1775 - 3550 1112 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 3609 - 3668 2.4 - Term 3685 - 3716 3.2 3 2 Tu 1 . - CDS 3740 - 4015 244 ## gi|302858764|gb|EFL81852.1| hypothetical protein HMPREF0189_01706 - Prom 4121 - 4180 4.4 - Term 4385 - 4429 4.2 4 3 Op 1 3/0.000 - CDS 4481 - 4960 706 ## COG0700 Uncharacterized membrane protein 5 3 Op 2 . - CDS 4953 - 5642 661 ## COG3314 Uncharacterized protein conserved in bacteria - Prom 5814 - 5873 8.0 + Prom 5922 - 5981 4.7 6 4 Tu 1 . + CDS 6032 - 7144 1133 ## COG3203 Outer membrane protein (porin) + Term 7164 - 7215 1.3 - Term 7158 - 7190 5.0 7 5 Tu 1 . - CDS 7238 - 8248 621 ## LHK_00625 possible ABC transport system periplasmic substrate-binding protein - Prom 8333 - 8392 2.7 + Prom 8206 - 8265 5.1 8 6 Op 1 . + CDS 8440 - 9606 665 ## COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain + Term 9611 - 9658 4.8 + Prom 9610 - 9669 3.4 9 6 Op 2 . + CDS 9755 - 10570 574 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 10620 - 10672 18.0 10 7 Tu 1 . - CDS 10671 - 11366 196 ## gi|302858771|gb|EFL81859.1| hypothetical protein HMPREF0189_01713 - Prom 11397 - 11456 2.0 - Term 11465 - 11507 9.2 11 8 Op 1 17/0.000 - CDS 11532 - 12623 1106 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 12 8 Op 2 21/0.000 - CDS 12624 - 14294 1775 ## COG1178 ABC-type Fe3+ transport system, permease component - Term 14302 - 14343 4.1 13 8 Op 3 . - CDS 14378 - 15556 411 ## PROTEIN SUPPORTED gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 - Term 15583 - 15620 7.1 14 8 Op 4 . - CDS 15631 - 15906 286 ## gi|302858775|gb|EFL81863.1| hypothetical protein HMPREF0189_01717 - Prom 15941 - 16000 4.5 + Prom 15989 - 16048 4.5 15 9 Tu 1 . + CDS 16115 - 16846 313 ## COG0400 Predicted esterase + Term 16882 - 16921 3.1 + Prom 16898 - 16957 2.3 16 10 Tu 1 . + CDS 17021 - 17110 89 ## + Prom 17129 - 17188 4.9 17 11 Op 1 . + CDS 17291 - 18667 1740 ## COG3069 C4-dicarboxylate transporter 18 11 Op 2 . + CDS 18680 - 19822 1316 ## CCC13826_0552 isoaspartyl dipeptidase (EC:3.4.19.5) + Term 19841 - 19888 6.1 + Prom 19831 - 19890 3.8 19 12 Tu 1 . + CDS 19917 - 20285 258 ## gi|302858779|gb|EFL81867.1| sensory box sensor histidine kinase/response regulator + Term 20352 - 20384 -0.0 - Term 20859 - 20904 2.7 20 13 Tu 1 . - CDS 20928 - 21914 717 ## COG1858 Cytochrome c peroxidase + Prom 21885 - 21944 2.4 21 14 Tu 1 . + CDS 22132 - 23148 698 ## COG0657 Esterase/lipase - Term 23155 - 23187 6.3 22 15 Op 1 . - CDS 23203 - 23547 122 ## Glov_1004 hypothetical protein 23 15 Op 2 . - CDS 23618 - 25159 1591 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 25505 - 25564 2.2 24 16 Tu 1 . + CDS 25662 - 26225 -6 ## PFLU3000 LysR family transcription regulatory protein 25 17 Tu 1 . - CDS 26240 - 28534 780 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase - Prom 28758 - 28817 3.4 + Prom 28425 - 28484 2.5 26 18 Op 1 40/0.000 + CDS 28632 - 29318 552 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 27 18 Op 2 . + CDS 29315 - 30625 874 ## COG0642 Signal transduction histidine kinase + Term 30854 - 30882 -0.9 28 19 Tu 1 . - CDS 30599 - 31570 1005 ## COG0679 Predicted permeases - Prom 31616 - 31675 2.0 - Term 31668 - 31702 2.2 29 20 Tu 1 . - CDS 31708 - 32277 558 ## gi|302858790|gb|EFL81878.1| conserved hypothetical protein - Prom 32325 - 32384 6.3 + Prom 32251 - 32310 4.1 30 21 Tu 1 . + CDS 32389 - 32571 123 ## - Term 32490 - 32531 10.4 31 22 Op 1 . - CDS 32558 - 32890 161 ## Glov_1004 hypothetical protein 32 22 Op 2 2/0.000 - CDS 32932 - 34467 1520 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 34549 - 34608 3.4 33 22 Op 3 9/0.000 - CDS 34611 - 35660 254 ## COG0583 Transcriptional regulator - Prom 35761 - 35820 3.5 - Term 35768 - 35801 2.2 34 22 Op 4 . - CDS 35997 - 36911 373 ## COG0583 Transcriptional regulator - Prom 36938 - 36997 7.0 35 23 Tu 1 . + CDS 37029 - 38852 1092 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Term 38876 - 38912 6.4 - Term 38950 - 38997 6.1 36 24 Op 1 . - CDS 39001 - 39642 569 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 37 24 Op 2 . - CDS 39653 - 41854 2441 ## COG3383 Uncharacterized anaerobic dehydrogenase - Prom 41942 - 42001 2.5 + Prom 41894 - 41953 4.5 38 25 Tu 1 . + CDS 41989 - 42978 274 ## COG0583 Transcriptional regulator + Prom 43015 - 43074 7.0 39 26 Tu 1 . + CDS 43107 - 46265 2002 ## LI0012 hypothetical protein + Term 46286 - 46333 7.1 40 27 Tu 1 . - CDS 46492 - 46899 234 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 47123 - 47182 2.3 + Prom 47054 - 47113 1.7 41 28 Tu 1 . + CDS 47312 - 47476 122 ## + Term 47518 - 47559 1.1 + Prom 48279 - 48338 4.1 42 29 Tu 1 . + CDS 48573 - 49859 702 ## COG3681 Uncharacterized conserved protein + Term 50014 - 50055 0.4 43 30 Tu 1 . - CDS 49918 - 51195 916 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 51358 - 51417 5.3 + Prom 51518 - 51577 2.4 44 31 Op 1 . + CDS 51598 - 52776 1233 ## CDR20291_0573 hypothetical protein 45 31 Op 2 . + CDS 52805 - 54415 1626 ## COG0405 Gamma-glutamyltransferase + Term 54424 - 54462 7.1 - Term 54412 - 54449 -0.7 46 32 Tu 1 . - CDS 54499 - 54747 234 ## gi|302858805|gb|EFL81893.1| hypothetical protein HMPREF0189_01747 - Prom 54775 - 54834 3.1 - Term 54878 - 54913 4.6 47 33 Tu 1 . - CDS 54932 - 56401 1731 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 56504 - 56563 5.2 + Prom 56451 - 56510 5.6 48 34 Op 1 . + CDS 56749 - 57063 257 ## Acfer_1747 SAF domain protein 49 34 Op 2 . + CDS 57060 - 58220 900 ## COG2721 Altronate dehydratase + Term 58250 - 58289 3.7 - Term 58240 - 58272 7.0 50 35 Tu 1 . - CDS 58291 - 60840 1821 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 60973 - 61032 3.7 - Term 61057 - 61102 5.2 51 36 Op 1 . - CDS 61125 - 62636 1176 ## COG4145 Na+/panthothenate symporter 52 36 Op 2 . - CDS 62649 - 62909 297 ## gi|302858811|gb|EFL81899.1| hypothetical protein HMPREF0189_01753 53 36 Op 3 . - CDS 62925 - 63473 577 ## Kcr_0290 creatininase 54 36 Op 4 . - CDS 63509 - 63697 315 ## gi|302858813|gb|EFL81901.1| creatininase - Prom 63725 - 63784 3.8 - Term 64114 - 64152 1.2 55 37 Op 1 9/0.000 - CDS 64286 - 65092 282 ## COG1484 DNA replication protein 56 37 Op 2 . - CDS 65108 - 66709 781 ## COG4584 Transposase and inactivated derivatives - Prom 66739 - 66798 4.0 57 38 Op 1 . + CDS 67107 - 67259 121 ## gi|302858816|gb|EFL81904.1| disulfide bond formation protein, DsbB family 58 38 Op 2 . + CDS 67326 - 67802 36 ## COG2452 Predicted site-specific integrase-resolvase + Term 67834 - 67885 0.8 59 39 Tu 1 . + CDS 69660 - 70133 296 ## JJD26997_0017 DsbB family disulfide bond formation protein + Term 70173 - 70203 2.6 - Term 70158 - 70194 7.2 60 40 Tu 1 . - CDS 70213 - 71655 917 ## COG0534 Na+-driven multidrug efflux pump + Prom 71930 - 71989 3.4 61 41 Tu 1 . + CDS 72031 - 73326 1114 ## COG2252 Permeases + Term 73369 - 73425 3.3 62 42 Tu 1 . + CDS 73530 - 74687 998 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase + Term 74707 - 74746 6.8 63 43 Tu 1 . - CDS 74757 - 75092 295 ## gi|302858823|gb|EFL81911.1| hypothetical protein HMPREF0189_01765 - Prom 75113 - 75172 3.7 - Term 75234 - 75274 5.0 64 44 Op 1 . - CDS 75291 - 76211 1051 ## Ddes_0825 hypothetical protein 65 44 Op 2 16/0.000 - CDS 76222 - 77154 716 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 66 44 Op 3 . - CDS 77157 - 80093 3053 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Term 80603 - 80642 1.7 67 45 Tu 1 . - CDS 80653 - 81807 844 ## COG3203 Outer membrane protein (porin) - Prom 81918 - 81977 5.2 - Term 81925 - 81974 1.0 68 46 Op 1 . - CDS 82000 - 83481 1603 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Term 83491 - 83546 6.6 69 46 Op 2 . - CDS 83562 - 84581 1315 ## COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold - Prom 84656 - 84715 4.1 + Prom 84704 - 84763 2.9 70 47 Tu 1 . + CDS 84817 - 86688 678 ## COG0642 Signal transduction histidine kinase 71 48 Tu 1 . - CDS 86730 - 87347 453 ## COG4566 Response regulator - Prom 87374 - 87433 2.9 72 49 Tu 1 . - CDS 87773 - 88747 369 ## COG0583 Transcriptional regulator - Prom 88785 - 88844 8.1 Predicted protein(s) >gi|301349783|gb|ADCQ01000067.1| GENE 1 789 - 1772 1030 327 aa, chain - ## HITS:1 COG:RP512 KEGG:ns NR:ns ## COG: RP512 COG0208 # Protein_GI_number: 15604372 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Rickettsia prowazekii # 4 327 2 324 324 359 52.0 5e-99 MKSSLTKSRNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWKNVLTDGERDFLTK VFRFFTQGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPETV YNEFLQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLNFTRNGTM KGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIELEDAFID LAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSMLGVTHTNF FENRVVDYAKGALSGSWGDVWGQAGTK >gi|301349783|gb|ADCQ01000067.1| GENE 2 1775 - 3550 1112 591 aa, chain - ## HITS:1 COG:RC0647 KEGG:ns NR:ns ## COG: RC0647 COG0209 # Protein_GI_number: 15892570 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Rickettsia conorii # 3 590 11 607 607 545 45.0 1e-155 MGIEFDLERDSLLGEVSRKRLRESYMKEEEQSPQERFATVAETFASNPAHAQRIYDYASK HWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGVGIHVDIRS ADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDIIQFLEMRKPTGDQNLRT LNLHHGVNISDKFMRLIEKSMVNADADDSWELRDPHSHRVVEVVSARDIWQRILELRMQT GEPYIVFIDAANRALPSWLSDKGLKIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDHW NTNEQFIPDVMEFLDNVLQYFIDNAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPI ESVLAKSINYRMFSHIKEECARGDEILCEKRGPCPDAKDAGIPRRFSHWNAVAPNASSSL IMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEEYGLNSDEVWTSITAHDGSVQH LEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQSLNLFFPADVSIAYLHACHFLA WKVGLKSLYYCRSDKLRKADKLGEKVERHRLEESINMREVLENSSCLACEG >gi|301349783|gb|ADCQ01000067.1| GENE 3 3740 - 4015 244 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858764|gb|EFL81852.1| ## NR: gi|302858764|gb|EFL81852.1| hypothetical protein HMPREF0189_01706 [Burkholderiales bacterium 1_1_47] # 1 91 1 91 91 183 100.0 3e-45 MNILIKETGELRSLSFIDWHDGQEYTEQLISASGEDPNFLFDQDGEVFMTDAPTFSKWNA FFRSHYDIESVCAALGLQPISKAEYDPFVHL >gi|301349783|gb|ADCQ01000067.1| GENE 4 4481 - 4960 706 159 aa, chain - ## HITS:1 COG:ECs5287 KEGG:ns NR:ns ## COG: ECs5287 COG0700 # Protein_GI_number: 15834541 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 7 159 3 153 153 125 45.0 4e-29 MPNATATQVKKSNNPFDIFITGLRKGFNVAINNLMPNVLMAFVLAYILDLFGVMAFLGKV CGPVMSIFDLPGQAITVLCATWLSCGAGVGVAASLLASGTLNAHDITILSPALLLMASQI QYMGRLLGVADVPKKYWPLLMFNSILMASIGMLIMRFIV >gi|301349783|gb|ADCQ01000067.1| GENE 5 4953 - 5642 661 229 aa, chain - ## HITS:1 COG:STM4514 KEGG:ns NR:ns ## COG: STM4514 COG3314 # Protein_GI_number: 16767758 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 19 215 84 277 294 177 47.0 2e-44 MSPETLTASAGVQAQEAEEAEKVGVGAYISLFFAMCFFSGVFYKMPDAYRWLGAFDFTTL IGKFGSVSGAATFVGKGGLSARAGFLFALSLVPGVMLALGLLEVLSHYGALKAAQKLMTP LLRPILGVPGITGLALITDLQSTDAGAALTKGLVDSGKISKENLVVIAGWQYAGAGLINN YFSIASALFMAFLVPVWIPLVVMFCLKFVGGVFVRFCLKTFYKKDFQNA >gi|301349783|gb|ADCQ01000067.1| GENE 6 6032 - 7144 1133 370 aa, chain + ## HITS:1 COG:RSp0955 KEGG:ns NR:ns ## COG: RSp0955 COG3203 # Protein_GI_number: 17549176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 248 1 268 368 97 32.0 3e-20 MKKTLLAAALLAATSYATAASNVTLYGVLDAGVTVSKLHGDSTKVQMSNGNWMGNRWGIK GSEDLGNGNSVFFKLEQGFKLSNGNEASEGKAFSREAALGLSGTWGTVAFGRFGGLSSDC GTYSILGGAPYTTSFQTIGSMYSAFYLTDRYNNSIIYLTPEYNGFQGSFMYSNGRDSDEN KWSYNQHYYGAGLTYGNGPLNVDLIYEALDYKGEADKNKTTQLLNLGASYNFGAFTLYGA YEYAMHAPLPGFVTFQKDEDDLDGKALDNKYNNGKANNYHAFALSASTNALGGEVMLQSQ FAFGKNKNASEAGLEDKFNTLSIGAAYFYHFSKRTLMYTQAAWGTAGKALKHNTDDLRGW NATIGMTHTF >gi|301349783|gb|ADCQ01000067.1| GENE 7 7238 - 8248 621 336 aa, chain - ## HITS:1 COG:no KEGG:LHK_00625 NR:ns ## KEGG: LHK_00625 # Name: not_defined # Def: possible ABC transport system periplasmic substrate-binding protein # Organism: L.hongkongensis # Pathway: not_defined # 35 322 33 307 329 135 32.0 2e-30 MSASRDKFHFWVGMSIVIVIAILIGLLCTVFTPNYFRPKTIVETYFTESVNGLSPGAPVK FKGIDIGKVTEISLSSKVYPDDHISLFSPDASVAVVRMIVYIDENQLKEQLPDLIQKGLR FQTELAGVTGTIYLAANFLNPTLYPPEIKDVPWKPKYIYVPATISLTNEILENIQHFLAT LQNIKTKIDDVTPDAVKTQSTKELLTTLNNTVSMLDPDKLHTLLSNAENYVNSSHSILSK VDVARVNSLLSELTKTTEKLNTTLHETKGSGLVTQLNKTISGADQAIVDNRYNIRELILN LKDISDNLKILSESLAQDPNFLAPRPHHPSPVSSEH >gi|301349783|gb|ADCQ01000067.1| GENE 8 8440 - 9606 665 388 aa, chain + ## HITS:1 COG:CAC0906 KEGG:ns NR:ns ## COG: CAC0906 COG2872 # Protein_GI_number: 15894193 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain # Organism: Clostridium acetobutylicum # 5 371 3 370 387 167 32.0 3e-41 METMQELFYRDPYAREFSATVTSCREGKKGFEVVLDDTAFYPEGGGQPSDEGTLGEAKVI FVKRVGPEIVHYIDKPLEVGSTVIGKIDWERRFDNMQNHTCEHIFSGLVHQKYKLENVGF HMDPDDITVDFSGEIPMESIPELEQLVNQAITQDIDIKIEFPTEEVLEAMEYRSKKELHG VVRIVTIPGCDRCACCGTHVRRSGEIGMFKILDASKHRGGTRVRFVAGERARRDYGWRVK EIAKVSALFSAKPHEIAKAAANFIEEGKTKDQKSAQRTERYLQFVASGLVSRNGLVKVFE EDLSPFELKRFAGMLKEKFSESSIGVFSSIEGGFNYVIASSDPELPKISKSLNAKLNGRG GGRDGMVQGTYRVDKKAVEEAFDEIFSK >gi|301349783|gb|ADCQ01000067.1| GENE 9 9755 - 10570 574 271 aa, chain + ## HITS:1 COG:all3011 KEGG:ns NR:ns ## COG: all3011 COG0390 # Protein_GI_number: 17230503 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Nostoc sp. PCC 7120 # 6 265 6 258 258 135 35.0 1e-31 MAISGSNDISLLQMGIGLLPVGISLFLSWKYKLGLSKSLIIGVVRGTIQLVAVGYILLWA FRQSDPWVLAALILFMVGAASESALKRLGGLQNAKSRRKYRWILFTAIFLGAGLTVSYLE FVVIRPTPLWEGRYLVPLAGMIVANAMNSAALGVERFRSELELRSGEIETLLALGATQQQ AVLKTVQVSASAAMLPAINMLMVLGIVALPGMMSGQILAGESPLTAVRYQLLICFSIAAT AAIVTWVSIQMTQKLYFTKNDQFIRSQDSGD >gi|301349783|gb|ADCQ01000067.1| GENE 10 10671 - 11366 196 231 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858771|gb|EFL81859.1| ## NR: gi|302858771|gb|EFL81859.1| hypothetical protein HMPREF0189_01713 [Burkholderiales bacterium 1_1_47] # 1 231 1 231 231 404 100.0 1e-111 MKRLSLSLAVVILALSSAVSASDFEEDEQYISCRKGAVNDRQLTACQERLLERLDMSIAK ALDRNMTLLAESERITAQRYQSQWESWRQSHCDYSLRKQNDQQHLSLACYLQAARDRLDM LEGEKLETNSNFKVCLRRAGKIESHEILCHQEEYQRLEQILFGTVQAAENSSPQPKTVLE DQLLWEKDLAKKCKRPPFASIEQAANNYQCLCNEIYKRIRSLTGTAERPVR >gi|301349783|gb|ADCQ01000067.1| GENE 11 11532 - 12623 1106 363 aa, chain - ## HITS:1 COG:mll6255 KEGG:ns NR:ns ## COG: mll6255 COG3842 # Protein_GI_number: 13475228 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Mesorhizobium loti # 4 317 6 318 387 303 47.0 4e-82 MSVSLTLKNISRSYIKDNEKFFAVQNVNLEVKPGEFLTFLGPSGCGKTTTLRMIAGFETP TEGQILLGDKDVTKIPANERGMGFVFQNYALFPHMKIFDNVAYGLRIRKESSDLIAQKVK EALAMVGLEKAEHRYPNQLSGGEQQRVALARVLVLRPQLILMDEPLSNLDAKLRLHMRTE IRRIQQELKLTCLYVTHDQKEALTMSDRIMVMNKGKIEQIGTPMHLYDDPATPFVADFIG QANLFYGTLVSVEDKYGLVDVAGRRVKARMGVLNPPRIGGKALLIVRPENLNIGTSENCL AVKLINRLFEGDRIDYQFEVVNGINPKPYSMSVPFLPGTSLLPEGSTLDASFVPDAGVLL NGE >gi|301349783|gb|ADCQ01000067.1| GENE 12 12624 - 14294 1775 556 aa, chain - ## HITS:1 COG:PM0956 KEGG:ns NR:ns ## COG: PM0956 COG1178 # Protein_GI_number: 15602821 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Pasteurella multocida # 8 537 131 666 685 286 36.0 6e-77 MTSGNKQQRDPVTLLTICVLWLAMGVFVLYPIVRLLAMTFIVDGHLTFDNLLPFLANWYD RRAIVNSIILACAVGFAGTIIGFIFAFAVTRLSLPKWLTFFISAVTLLPLISPPFTSSIA LTLCLGPNGIILTALGLENFNFFGFWGTFISETLTYFPIAFMTLSTILMRIDPNLEDAAY SLGASPFNVFKSVTFPLSVPGLANAFLLVFSCSLADFATPLVLGGHSFPVLPTQAYLQIT GMYDFKGGAALSFLLLIPALAVYALQNFWVSRKSFVTVSGKAGGRSSIKGPGPLISSIVV GTVAFITAFVLYLYAIILVGSVVKVWGIDNSLTLENYHYVFTFGMKAIKDTLLIACIGTP LGGLLAVLIGYVCKWLKIRGHKTLETVSLLNYTLPGTVVGIAYIIAFNDQPLVLTGTVYI LIAAYVFRYSSAGIRNVIAALTQIDPSIEEASTSLGASSAYTFRKITVPLVLPAVLTGMR YLFIHSMTAISATIFLVSVNWTLITTRILECMTELQFAQACAFSIVLILIVFAASAFMAL MAKVLCPVGDASGGLR >gi|301349783|gb|ADCQ01000067.1| GENE 13 14378 - 15556 411 392 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 [Haemophilus parasuis 29755] # 78 387 23 339 346 162 32 4e-39 MRYLFVSRSGATVEIPVCWILASWKSREISALYRPCAKKFNKSSCRGYNYDYYDASSVNS EVSMKLLTVAAMAFTLLAGSVNAAEQLNAYSIMPEKYASKVFAEFTKDTGVKVNFMRFSS GEALARLNAEKKNPQVDVMLGGPADTYAAGVKEGIFEQYRPKDSDAIPASLRDPQNHWTG IGIIPLCFLTNTKFLEKNKMHAPESWNDLLDPRYKNNLQMADARTSGTATERIYSLVKVM GEDPAFAYQKKLNGNIQMYTKSGAGGAMPIATGQCGSGIFYIVDALDIQQQGYPVVITYP KDGVSYGIEATGIVKNAKNMDAAKKFVDWAASKKFADFIVANKINYVPTRSDVKTSNPLL DLSKINMKDVDVAWKGEKRKEYTNRWINEVIK >gi|301349783|gb|ADCQ01000067.1| GENE 14 15631 - 15906 286 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858775|gb|EFL81863.1| ## NR: gi|302858775|gb|EFL81863.1| hypothetical protein HMPREF0189_01717 [Burkholderiales bacterium 1_1_47] # 1 91 10 100 100 176 100.0 4e-43 MIVLLPDGKLINLNLVCFTDTRSFKEPVRFCMVNGESVFCEMTEDQYQALLLSLVHNEPL HKVLPIKEKVQKTKIDFRDFPSVLEGENSPV >gi|301349783|gb|ADCQ01000067.1| GENE 15 16115 - 16846 313 243 aa, chain + ## HITS:1 COG:XF1624 KEGG:ns NR:ns ## COG: XF1624 COG0400 # Protein_GI_number: 15838225 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Xylella fastidiosa 9a5c # 42 240 17 217 224 102 31.0 6e-22 MSPRWSLRASSPQLPKLGMELKINTMDGELIEVGSSEAARKVILLHGLTGTGSVIKPVAE YLRRSLGNDYSFLLPTASVIRVKQFNGEPVHAWFDVKNCDFRKEVDVDGIFESSQRIGSM IRREMARGISPDDIFLGGFSQGGVIALTAALLEPFPTGGVFALSSYLPLDEPLVSRLTDA SKTIPVFQAVSLKDEFISQEASERASSFLANRGNPIQTNTYDMKHEISNRELDDVAAWMK SLG >gi|301349783|gb|ADCQ01000067.1| GENE 16 17021 - 17110 89 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSYIHIEFSNENLAAMLSLPVREDEIIQK >gi|301349783|gb|ADCQ01000067.1| GENE 17 17291 - 18667 1740 458 aa, chain + ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 448 1 451 462 308 47.0 2e-83 MVGVLLTLVAIGLVSYFVIKNYYPPIILLLLGLLLLFCAYLEGVPAVAPKASTNFFAFDF AQAFTNLLKGRLPGLGLNIMAIAGFAVYMDRIGASKALVKLCVKPLKAIRSPYVLLALTY VVGQFIALFVNSAVGLGLLLMASIYPLLVALGVSRTSAAAVIATTCCLDLGPSSSNAMRA ADLCNMDVVTYFVQGQGPVALCTIASVAIGHFFVQRWFDKKEGALANKEDTKESALDVDK ALEGAGPAYYAILPMLPLGLLIGFSPLVYKAIKLNLVTAIIVSLIIALVVDIATRRDFKQ CCKDSQAIFEGMGKVFTSTVSLIVCAEMFALGLNKIGGISTMIQAAASIQNAGLFIMLIV MLVIMIVAAIVTGSGNAAFFAFSPLLPEAASSVGIPTLALAVPVQLSAGIARTMSPIAGV IIAVSGITGLTPIALIRRTIPVMIIAVIVSVTSSLIFL >gi|301349783|gb|ADCQ01000067.1| GENE 18 18680 - 19822 1316 380 aa, chain + ## HITS:1 COG:no KEGG:CCC13826_0552 NR:ns ## KEGG: CCC13826_0552 # Name: iadA # Def: isoaspartyl dipeptidase (EC:3.4.19.5) # Organism: C.concisus # Pathway: not_defined # 4 379 3 379 379 344 47.0 3e-93 MAYLIKGAHVYNPDNLGVQDVLVVNDKIAAVGKDLTVVLPELETVEASGKILTPGFIDQH IHVTGGGGEGGPRSRTPEIVLSELISCGTTSLVGVSGTDSVTRSLPNLLAKVQALTDEGV TAWMYTSNYSYPPTTLTGSVKNDLLMVHEVLGVKIALGDHRSSFPTTQNVLDLLTQIRVG GMIAGKIGVLHIHLGNVPGAFEMFEEIVNRGFPIRHIRPTHCARDKYVFGKALEFAKRGG RIDITTGGSCCFESPADAVEAAWDAGIEPSIMTMSSDGHGSVPRFNEKGEMVGLGIGGVA CNLRDLKKLIARGHAVEKVLPLLTRNVARGLEMKGKGEVAVGNSADMCLFDENWELQDVY SKGVLMMKDNELLQKGTFEY >gi|301349783|gb|ADCQ01000067.1| GENE 19 19917 - 20285 258 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858779|gb|EFL81867.1| ## NR: gi|302858779|gb|EFL81867.1| sensory box sensor histidine kinase/response regulator [Burkholderiales bacterium 1_1_47] # 1 122 1 122 122 216 100.0 5e-55 MNGKQKEFLAKSGINLTDGLIYFSENERLYEKYLFRFLEEPTFPELFKAIEEDRREDARR AAHSLKGITATLGFTSLNTPVKAQEFDFKNGRWEEGNQYTDELKKEYARIISVLRAAKAL EN >gi|301349783|gb|ADCQ01000067.1| GENE 20 20928 - 21914 717 328 aa, chain - ## HITS:1 COG:VC0089 KEGG:ns NR:ns ## COG: VC0089 COG1858 # Protein_GI_number: 15640121 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Vibrio cholerae # 29 322 32 328 333 289 50.0 5e-78 MRTKLIVGSLFAFTALSSSAALLDSVNIPQTPQQEAKIELGKMLWFDPRLSLSGKISCNS CHDLSTNGADTKPLSIGYAGRKGTVNSPTVFNAGKQIAQFWDGRAKNLSEQATGPITNPL EMAMTPELAEGVIRSIPGYRPYFEKAFGSQNPTFSEIAEALAAFESTLTTPNSPFERYVK GDKTALTQQQIDGLRLFRRSGCIMCHNGNLLGGTSFQKVGSVRPYITNNPSKGKMDITGK PWDEMMFKVPILLNIEKTAPYFHDGAIRTLPEAVGTMADIQLDANLSAKQVDDIVAFLHS LNGEVPKIEKPALPPSGPETRKYIEEVY >gi|301349783|gb|ADCQ01000067.1| GENE 21 22132 - 23148 698 338 aa, chain + ## HITS:1 COG:DR0133 KEGG:ns NR:ns ## COG: DR0133 COG0657 # Protein_GI_number: 15805172 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Deinococcus radiodurans # 59 283 39 248 296 115 37.0 1e-25 MKLGKMFVLTGAFLVMTNIANAKLPGYTEGAEIMRPKIENGQIDSMSGIIYSQIKGLRSN RALRMTVMIPRDGKAKPAIIYFPGGGFTSADHEKFTEMRTALAKAGFVVAAAEYRTVPTK YPALVNDAKAAVRFLREHAKEYGIDPAKIGVLGDSAGGYLAQMSGATNGEKQFDKGDFLN QSSDVQAVVSLYGLSDLRNIGEGFPEEIRVVHDSPAVTEALLVNGPAFNTFPGESITKDP KKMLDASPLGHVSGNEPPFLLLHGSADPLVSPEQSASMYQALKAKNQDVKYILVEGAKHG DLPWYQPNIINTVVNFFKEKLGDPAKLAESKQVKGGSL >gi|301349783|gb|ADCQ01000067.1| GENE 22 23203 - 23547 122 114 aa, chain - ## HITS:1 COG:no KEGG:Glov_1004 NR:ns ## KEGG: Glov_1004 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 29 114 77 165 165 72 46.0 4e-12 MSNQNLLKVLFLLSCLCLSLPSFSAGKLGADMHQAKGVQCQTCHGTDMKNPQYPTEETCT QCHQKAVLAEKTRNLPDANPHAAPHNGDCILCHLQHEKSENYCAQCHNFKFVVP >gi|301349783|gb|ADCQ01000067.1| GENE 23 23618 - 25159 1591 513 aa, chain - ## HITS:1 COG:YEL047c KEGG:ns NR:ns ## COG: YEL047c COG1053 # Protein_GI_number: 6320788 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Saccharomyces cerevisiae # 44 510 6 469 470 170 29.0 6e-42 MNTLNRRKFLSSSALLATSSLITVTANAAAKDPMLAKWDEEADIIVVGSGFAGLAAAAEA KNANAGNVIVLEKMRAPGGNSVINGGIFAVPGNPAQVKLGIKDSPELLASDMIAAGLGYG YPEKIKAMTEEALPTYEWTVKELGVQYNDKVGQEGGHSVPRHVYTINGSGSEIVHKQLAY AKKLGIPVRLRVYVERIIRDEDGRVKGLQVREGYRFPNAQSGKVKFIKAKKAVILCHGGF GADVNYRMKHDPKLTDKFDTTNQPGATSELWREASRIGGNLIQADWIQCGPWNSPEEKGM GVALYFAQGAAATQGIWIDCATGKRFVNELANRKIRADAVITNNNKGHTCIALADQTAVD LTIQKSRPGILDKQLERKVVHKFATLEDLAKQYNVPMDALQATIADYNKHQAEGTPDEMG RKIYKGAQAIGTGPWYCSILSPKVHHCMGGLETNSKGQVIDVSSDKPIPGLYAAGESTGG VHGAVRLGSCAVLDCLANGRIAGRKAAQEQNWS >gi|301349783|gb|ADCQ01000067.1| GENE 24 25662 - 26225 -6 187 aa, chain + ## HITS:1 COG:no KEGG:PFLU3000 NR:ns ## KEGG: PFLU3000 # Name: not_defined # Def: LysR family transcription regulatory protein # Organism: P.fluorescens_SBW25 # Pathway: not_defined # 36 161 165 290 300 64 31.0 2e-09 MDHEDVISGKVDIAYLPYRPPAEGLFIWDVNKVGNVPLATPEYVRRRGNPQSPEDLRTHD IILRAGRNYPATTHLQKDGELRPLEYKQIVFSGDVLSGKEWLMAGMGVAIDLSLAFCWRD IEQGRLLPVLNGWSRAPWDLTVAIKKQNLSNQRLVALARALVEHETKASIKRAEFYALGL QKLKARQ >gi|301349783|gb|ADCQ01000067.1| GENE 25 26240 - 28534 780 764 aa, chain - ## HITS:1 COG:PA1972 KEGG:ns NR:ns ## COG: PA1972 COG2194 # Protein_GI_number: 15597168 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Pseudomonas aeruginosa # 241 760 14 538 567 389 40.0 1e-107 MNLKVPKKTNSFLVWSFNDILTVLLPLWLLCLISEFRYAPIDSFFAAPFYLSGNNWLGTG SFFFSAVLHKGGKYVAVAVAVSSLILFLLSYLKKFARLKPYRKVCLYVTLSISACALIIS GLKSLSASPCPWSLPQYGGSGSAGKCFPAGHASSGFCLFSLYFAFRQLRVTKSWIFLILA LALGWILGVGRQAQGAHFLSHSFATMFLDWAICALFYRLFFFPKAPVKIRQKPISALSYC LITAFSLTFIFNLPFFSKACSALKFSPSDLWLLVVCASILFSTFFAILRLLNYSFLIKVF SLFFTVCAAGALYFNYQYGTIINSEMIRNALATDTAEAAELLTAKFFLEFAFLCLPQLYL TFFVPIKHSSFVRGLFQGLIGLVIGVCFLMLNFQGVSSLIRSEPVLRNLISPVNVFSGTY KAVFKDGSTEVDAPRIVIDPKPALGASHKNDKGTLFIVVVGETARLANWGLAGYSRDTTP QLRARNVIPFSKTISCGTSTDVSLPCMFSRVGRDRYDRDRILKEESLLPVLQRAGINVFW VDNQSGCKGVCKGVPSLSISKTKAPSLCSGPRCYDEALLAGIDTSEILKPGKTTVVFMHQ LGNHGPAYSKRYPKNFEVFKPVCTDEKLNNCSREEIVNAYDNAILYTDHFLAGVIDWLKG LDGFDTGLLYVSDHGESLGENNMYLHGAPELIAPKEQKEVPMLLWLSKGFEQKFGLNDVC LREQAKADASHDQLFSSLLGILDVKSSVYDQNKDFSVVCRKSNS >gi|301349783|gb|ADCQ01000067.1| GENE 26 28632 - 29318 552 228 aa, chain + ## HITS:1 COG:PA4381 KEGG:ns NR:ns ## COG: PA4381 COG0745 # Protein_GI_number: 15599577 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Pseudomonas aeruginosa # 4 227 3 226 227 211 48.0 1e-54 MPTILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKYDLIVLDIMIPGMDG LRLCRELRSRGNTTPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVLRRS STPEEKVLQVGNLRLELDSKRVFRGDTELKLNPTAFRILAFLMQKSPEVVSREEIEDEIW GFQRVAGDNLRAHIYQIRKIVDKPFEEPLIETRHGFGWAVRAKEDRGE >gi|301349783|gb|ADCQ01000067.1| GENE 27 29315 - 30625 874 436 aa, chain + ## HITS:1 COG:PA4380 KEGG:ns NR:ns ## COG: PA4380 COG0642 # Protein_GI_number: 15599576 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pseudomonas aeruginosa # 1 423 1 421 426 200 31.0 4e-51 MKKGRSLKQSLGLLCGLIAAACAVLYSITLVYVLETAENKLMASVMDDMLQTVVTADILQ GKPPRLDQVTRLYIEGDPTRQIPELFKNYPQGYTEFTDGEDLHTYTKIIDGKRYVLTRHQ GNFEIWERHLFRIGVVGFLLLIAICSFVGWYLGRKLLSPLGQLTKEAVRAEGLIQNGKIY TEEIFKGYWPDNEIGELERSFKALVSKLKVLAMKERAFSTEVSHEVRTPLTVIDTSLELL NEQVQSNDRQKTLIRRAQNASSRIKGMAEVFLNIGRARTGQNNALCSMPELIAGLKESWK QKAENKGLKLSVELKNAPKQTFNEVLGATIFDNLVFNSIHYTDKGSVTVIIDEDKAIIRD TGIGIKEEDREKVFDRGFRAGQGSRGHYQGFGLGLAISKRAAEALGWSISLKSEVGKGTD FEIRFKSDSVNEVNGD >gi|301349783|gb|ADCQ01000067.1| GENE 28 30599 - 31570 1005 323 aa, chain - ## HITS:1 COG:CAC2949 KEGG:ns NR:ns ## COG: CAC2949 COG0679 # Protein_GI_number: 15896202 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Clostridium acetobutylicum # 85 316 78 301 305 75 25.0 1e-13 MLAATILHSLSAVCVLLIVIGFGVFLARKGWFDAPSHRGIVSKLVNAALPCFLFYSVISK FSHGELYNLLKFAGLPLLTVGLNFLISVLFIKLGWVRPHMKGTFIAAFTGATVLFVGVPL VQTMYGSNGIPYLLVYFFANCVFIWTVGIFNIQLDGARRGMTEEPKIFSVHGLKMLLSPP LMGFLIGLIVVLLSIPVPKFISQSTHTIGQLATPLALVFVGITVWQIGFEKLKKLPREVW LILLSCYVIRPITMYLCTMPLDMDPLMRKCFILASALPVSSVIAVLSKAYGGDEEFASEA IGASTVAMIFVLPFLLIAVNLVN >gi|301349783|gb|ADCQ01000067.1| GENE 29 31708 - 32277 558 189 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858790|gb|EFL81878.1| ## NR: gi|302858790|gb|EFL81878.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 189 1 189 189 370 100.0 1e-101 MNYQEISREECSEALAKIITVLSEIILDPHENKTSVYPKAAEAFNGIADEVGFGGPRFNE VTFNEEFDRDAAKLFYGVGDTTIGMTHSFWAGGLITVTGKNTHEAFKTYLSRGLQNTSNL PDDHLAVELAFLGHLLAEDKIDEAQQFVKNEILAWWPTAEQNIDSKTQNAGIKAFFASVT TALKFVEAL >gi|301349783|gb|ADCQ01000067.1| GENE 30 32389 - 32571 123 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDPGCKKLSESLDFGEFELSRFTPFSLQQSSALHNDEKLLQCESTATAVPQTKEKVIKGL >gi|301349783|gb|ADCQ01000067.1| GENE 31 32558 - 32890 161 110 aa, chain - ## HITS:1 COG:no KEGG:Glov_1004 NR:ns ## KEGG: Glov_1004 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 27 110 81 165 165 86 50.0 3e-16 MRNLLLILLPALFGISTCFAAGMAESHTVKNIPCEACHVSKEKMETPTITQCQQCHNLDV LVKQTESVKPRNPHFSPHYQNKLECSNCHIGHEPSENFCGQCHNFDFKVP >gi|301349783|gb|ADCQ01000067.1| GENE 32 32932 - 34467 1520 511 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 22 509 16 478 484 187 32.0 4e-47 MSQVKATRRLILKSSLAVGLGAASTAAATFAQANPQTQIPTTWDESTDILIVGSGFAGLA AAAAAAREGSKVIILEKMPTIGGNSIIDAGDMCAVGTPQQKEKNVKDSPELLAADMMRNG LFLNDPKKVKFVSEHAHDNYEWLVNEIGVEFMPVVGFTGGHSVPRAVTAKNGSGSGIINP LADYLAKQGIKPRIRNYVETIYRDDSGRVVGLKVREGYRFPKEGSGKVKNIQARKAVILY HGGFGADVKYRSLLDPKLTEIFLTTNQPSATAGMWREAARIGGMIIQADWIQCTPWNNPL EKGMGNTWNFGQYVAGEAGVWVNTLGKRFVNENANRKIRADAILVEQGKGLKAIAVANKA ASASLEGRRPGFMEKSVKDGLIKEYPTLDALAADWKMPPEALKETVSQINTYFEEGKDPQ FGRIVKGLKPMKEGPWYAMEMSPKVHHCMGGLATTVDGKVLDVSTLEPIPGLYAAGEATG GTHGAVRMGTNAILDCLVNGRAAGKAAATQN >gi|301349783|gb|ADCQ01000067.1| GENE 33 34611 - 35660 254 349 aa, chain - ## HITS:1 COG:AGc4500 KEGG:ns NR:ns ## COG: AGc4500 COG0583 # Protein_GI_number: 15889748 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 297 1 291 299 94 26.0 2e-19 MKKLDNLLAWKVFKLALETGNLTQASIQLDLDTAAASRLIDGLERELGEKLLYRNRRPFI ATTTGDEILADVSSLIEAHDKLTRRFTLKRGQSVIGHKVITLSAAQGYGHGWLMPRLLEY MKVNDNVTFDTLAERNLRDLQEGRIEVLLSVHRFIRQGFVIKPYAVLPCIAFASPEYIRQ YGMPSHPEELKNHVGLIRSGTNFPISHERITNGTDVKPLIWGKVIKAENSIVLKRLAVQG VGIVFDLPIGFFTEELAAGKLVPTIGNWRRTPFYCSVVTTEQLYKNDLIIRDFVNWMQIH EGKASNNRTQLALDYLGRSPASVFDNCQEFTQPEEAYFRRKKKKKDDSI >gi|301349783|gb|ADCQ01000067.1| GENE 34 35997 - 36911 373 304 aa, chain - ## HITS:1 COG:STM0859 KEGG:ns NR:ns ## COG: STM0859 COG0583 # Protein_GI_number: 16764221 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 4 273 3 272 296 165 32.0 1e-40 MFRYDLNDLLLLQAISDCQNLTRGAEKIGLTAPSASVRIRKLEEALKVKLLKRSPKGVEL TSAGKLVVDQSKKVFWTFEGMASSLRPFIRKEEGVIKIFANYGAAIDFLPYDLAEYMAVH NEISFVLEQRPSLDVVRAVATGEADIGISVCEVLPESLRSYPYHEDRLVAILPENHPLAD RTHVDFKELLVFDSVGLSQNCSMQLFLCKKAVDLGLPMKLKVQVDNPHILFEFVSVGVGY AIVSQKTLEKRSPEWKFKTVQLNDPWARRELKIFLPQAKDSETNRLEEFKDYLQSRGYMK SLDD >gi|301349783|gb|ADCQ01000067.1| GENE 35 37029 - 38852 1092 607 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 159 601 39 477 484 356 45.0 8e-98 MFKPLVAYALMAGVLSFAFINTASAEPFADLSKQYMSGDKAAYLAGVHTKKGLDCAACHT SNVISDSETEINKQCVICHGSLEQMGAKTNSQSPNPHKSHIGQMQCTACHSGHVPSVAYC TNCHDFPSLNKMKQGVSGLKAKFTDDLSKYEGLKPVKVEKTDLLIVGSGAAGFTASMAAR EAGVKNLIMIEKMAVPGGNSQLAAGGMNAAGTKFQKRAGIEDNPQLMFDDTMKGGKNVSN PDLVRVLADKSNESIEWLDKHGATLSHVGQGGGSSAARMHGPAGGAFVGPYLSKFFRDEA AKSNLDLRLNTKLVKLIKGTNGEIIGALVKGKHTGIYQIDAKAVILATGGIGANPELIQK LRPDISPEVKTSNQPGSQGDGIILGENVGAAVVDAKEIQLNPTLLVGSPVIVSETVRGAG AVFVNKEGKRFISELTTRDKTSAAVSKQTGGVAYEIFDQKVRDKVKQTGAAFELGLAKEG RTLEELGKNAGIDPKNLAATIAQYNKYAEAGNDPEFGRPKISAKVDTPNFYAIEVTPAIH YYMGGLKINPQAKVIDKNGKVIEGLFAAGEVTGGVHGKNRLGGNSISETITFGRISGEEA AKRIANN >gi|301349783|gb|ADCQ01000067.1| GENE 36 39001 - 39642 569 213 aa, chain - ## HITS:1 COG:AF0175 KEGG:ns NR:ns ## COG: AF0175 COG0437 # Protein_GI_number: 11497792 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Archaeoglobus fulgidus # 1 200 1 230 251 117 32.0 2e-26 MSKYGIIVNADDCVGCHACFVACKEENQVAPGVKWNHLERLEHPAEEVIEYFRVSCMHCE NPACMKVCPVKAVYFGPHGEVLIDQKKCIGCKGCLAACPYSAPKFSDPNKQSYFGDLKPL GGRSASPTAWTTRIPGKAEHCTLCTHRTSQGRLPACVEVCSTKALQLVDYDNPTAAQKAL IAKAQIINKDAGTSPKIRFISSITDFGAMKVKA >gi|301349783|gb|ADCQ01000067.1| GENE 37 39653 - 41854 2441 733 aa, chain - ## HITS:1 COG:MTH1552 KEGG:ns NR:ns ## COG: MTH1552 COG3383 # Protein_GI_number: 15679548 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Methanothermobacter thermautotrophicus # 19 729 183 861 865 156 24.0 1e-37 MQKLSRRQILKAISALPAVSPATSVLAQASNPQPQEWTGFAICDSCNHVPSCGIQFQAQG NNIISIQNWKENPRHWLCSKGMSTLQRLYNPNRLLYPMKRTAPKGAADPGWVRITWDEAY KTIAANMLAAKKKYGPESVMFYAGDPKEPRPSIYRLARYFDSPTWATESSAACRSGCMMA EQLNFGQPNNGATPTKDTKVYMIMATNVWAQPLGWWEAIKAAKARGCKIITVDTRRTKAA EIADIHLAPAIGTDAALAAGIARVLIKENLINKAFIDQWTHGFEEYAKYVDQFTPEKTQE ITGVPADKIVAAARLWAQGPGSFTLTTQSLSHNSNGVNNTRGLLLLPILMGYIDIPGGVP FGQPPKGLSMAAFGLHPAMADKKWWNSPEVKARRLDKDELPLWHDLQDQTSPNNLPEWVR DGKVKVFCGWGFNVNIWPQPDVYNDALSKLDFAFATDYFHRKDSHRNMDIILPAAMNYER HAPFGWYGPNIAVRKPIKPLGEAKEDWRIALELGCIVDKPEHFFNGDPEKALDFILHQYE GGDLVKFRNALPQISRIPAPKPGFKKYEDGRLRPDGKPGFNTLSGKLDFFSDRAAKFGYP GLPVYKPMTELSKDFDLRLMNGSRKPYITHSKTRTDQPYLMEIEGCLHVNINPKDAEARG IKEGDTILITSPYGGPVEAKAVVSLIVPVGTIDAQYGWLDNQNTQKLMNRGNRDPLSGYP SYFENPVRIEKKA >gi|301349783|gb|ADCQ01000067.1| GENE 38 41989 - 42978 274 329 aa, chain + ## HITS:1 COG:RSc0144 KEGG:ns NR:ns ## COG: RSc0144 COG0583 # Protein_GI_number: 17544863 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 21 305 22 296 321 102 25.0 1e-21 MAQDRPTSELLRFLAEFYDSRNLISTANRLGKGSATCFRLLAQAREIFEDPLFVKSGRAM MPTPKMDSLIGEIQSILMRIDRLPSPKVFSPKNLTQDFRIGCIDNAALRFIVPSLANLFD QAPNIRLSIISLHEHFQWALEKGNIDIVIYAPPNLKLRELGKKFHYETLYNTDHLYVVRN THPLAVKLREGKQLKRSDLKNYRFIAVKYGYSEGKITTDSSGFEEGSNIAIDTPYLLTVP HMLTQCDLIGRLPESSVRELIGNLPLTILPKNLVADPAWTPVFLWHDRTHFDPAHQWFRS VLLRSLEEKRAKKRRNRKNSEEDEVGRTQ >gi|301349783|gb|ADCQ01000067.1| GENE 39 43107 - 46265 2002 1052 aa, chain + ## HITS:1 COG:no KEGG:LI0012 NR:ns ## KEGG: LI0012 # Name: not_defined # Def: hypothetical protein # Organism: L.intracellularis # Pathway: not_defined # 1 988 1 997 1011 845 44.0 0 MNQSLRFDKKDRDLLRKINEVIDSGNVSSAEQETFRTALHPHGIQNMVSTHEERMAMAEV NLLQRLNDGTGVEERLSALKTLHDEVLYSAQTPFRFNTSRVLIQLMKEIVRARGNEEEQL RLIHDFQKVAAGNPRIVRAFLSKFFLLEMPEEWNQKTMDDHVHDANTMGRKNPTYLVMDA RVKGIRRLTVVYYNFVDPKVVYELYEAAHIMGISVRLGIKFKACFHDRYVEFLWTPKGFT DTKSVLDFLKEPETGALMQEGRSVEDWAKEEVLQTLEVFNAKHAAEIAKEWGIEVPLLSA KEFEEYVGMGQTTLIRLSEFVHSKLLPLVETEADKVKQELLSASPEDQGVLQERLNKLDE LTSVVLYQRWLRPSRNPEIPSLSESADDNRPDLLKVDVQGLLSRLMHIRPSSRITLLTGK LSDADVLELLWLGQGRISHLEILNMKERELGRVKHLNEINQLQQAINRHNAIELKRIIQE MHQRLEIAQNPERSALFNEFLENIPCILSFYANQPLGSRFGSDSTTILGTRFGMGFAVPD TLPRSAQKMIEKESDESFQIPLHVPVQCIDVYSEPEEVSPFVKWVRKNLGFTKFGMKHSR EWVATYANAEVTTNNCNVVSLGGITRGNTNGLVADESKQKKEKTGFSYTNTTILNIIKVT IGFLPAFLTFMLTQNWWVLAWFGALIWFSITGIRNIIQAVIAGGGFQKGARIDWKSLINW SRVSDSLMYTGMSVVLLEGFTRNVLLGHILGITVDKAPLLVFSIIALANGLYISSHNIFR GFPKTAVVGNLFRSILAIPVAMVYNVILAMILPIITGMPAVAILVPAAAIVSKFASDTVA GVIESVADRRNNYRLRTSDFRMSAKALFSCFERMELAFPKNDILSLMSRPADFIRVISER SKSMEIECIVISLDLMYIWYYQPCAQHAFLTELKRMSAEERLVFVRFQKSLTEYKEVSRL FLSGMLGSNFSKALAFYLDNYKAYLSAIEDICRKIEERSPVEFQETHLKASPLVPAVVWV KTQATALGRKFRGKKKESLAQETVEKTTTENV >gi|301349783|gb|ADCQ01000067.1| GENE 40 46492 - 46899 234 135 aa, chain - ## HITS:1 COG:MT0627 KEGG:ns NR:ns ## COG: MT0627 COG1373 # Protein_GI_number: 15840000 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Mycobacterium tuberculosis CDC1551 # 1 129 273 402 411 73 27.0 1e-13 MKSPKLYFTDTGLVCHLLNLQNGKELSNSYLAGNIFENFIVNEIKKSWAHNGKEANFYFY RDNTGMEIDLIIHAHGKYSCVEIKSKTSPDTHDAKWLNKAEDLLPDLAENASIVCMTEKA FPISPSIVAHSIWQI >gi|301349783|gb|ADCQ01000067.1| GENE 41 47312 - 47476 122 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEKGHNSKFISLPGKASDTCDIKDSFCEPLNQYRPFSDLESTEIFRALKISGTR >gi|301349783|gb|ADCQ01000067.1| GENE 42 48573 - 49859 702 428 aa, chain + ## HITS:1 COG:FN1147 KEGG:ns NR:ns ## COG: FN1147 COG3681 # Protein_GI_number: 19704482 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 21 426 3 410 411 279 39.0 8e-75 MIDKATREKIISLIHREVVPALGCTEPIAVSLAVAKATELLGMQPEEINLGLSGNIIKNA MGVGIPGTGMIGLPIAIALGSLIGKSEYGLEVLKEVSPEAVERGKAFIESVPINIKHLPD SPSNLHVDVEVRAQGHSARAVISREHTLFVLLEKDDEVIFAEEEGSGNGDAQDADDVQLN FRMVFDFATTAPLEEIRFMKEAQRLNEEAAEFALKGDYGHSLGAMIRNNGMKYMGDSTLA HMVEFTSAACDARMGGATVPVMSNSGSGNQGITATLPVVVFAKDMNASEDQMIRALTLSH LTSVYIKQSLGRLSALCGCVVASTGASTAITWLMGGGYEDACAAVKNMVANLSGMLCDGA KPACSMKISSGVSTALMSAMLAMNGRCVSSIEGIVSEDVDQTIHNLTLIGKEAMVETDRQ VLEIMTHK >gi|301349783|gb|ADCQ01000067.1| GENE 43 49918 - 51195 916 425 aa, chain - ## HITS:1 COG:AGl2386 KEGG:ns NR:ns ## COG: AGl2386 COG1473 # Protein_GI_number: 15891305 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 36 418 52 428 430 283 41.0 4e-76 MLLTIGLDLPRMTLYLIKLSQLKMKNTIDPESIRQELQQYESRLISFRKTVHENPEVGFN TRGTLARIKSILEQFGISGLDTETSPGSGFLLIEGNRPGATVALRADIDALPIEEKSGCE WASKNGNAHSCGHDGHQTWLIAAIIYLVKHRDFPGRILCIFQADEENVAGAQSVIDSGVF QKYGVKEIYGAHNEPSLDVGTIAFKAGPTMAACDLFSIRVVGVGTHGARPNFGKDPLPVA TEIYNALQSLVSRTLDPLKSAVVSVCSFNTEGSRAYNIIPDSVKMIGTVRTFDESIRDTI EEELTRRSQGIAAAYGIKAETVYERRVSAVNNDPELTKDAKEAADRCFGAQNVIELAEPY MISEDFSSYQKVLPGCFFFIGVKDSEHKEALHSPYFDFNDKALIPAGAFFSYLALERLNK LQEAK >gi|301349783|gb|ADCQ01000067.1| GENE 44 51598 - 52776 1233 392 aa, chain + ## HITS:1 COG:no KEGG:CDR20291_0573 NR:ns ## KEGG: CDR20291_0573 # Name: not_defined # Def: hypothetical protein # Organism: C.difficile_R20291 # Pathway: not_defined # 4 392 2 396 396 266 42.0 1e-69 MMFTSMYWYLFICLLFFGIGDFLGVATKAKVSAVFVSLMLFLIAFMAGWIPPDIIKKAGL DQIAKWSVILLVFSMGTTINMRELIAEWRTVVTALLAMGVIMLGAFLMMPFIGYENTMVS VPIVTGGIVATQIMTSGAMEHGFALAAALGTIVFAVQKFIGTPLASYFGLKEARFLIDEY RKTGVVPQDTYAPKKESAAGPTFFEGHKKYYGQFTCLAITALFSWIAFVIGKWTGLSATI WALILGAAVGSTGYLPRNILKHANAGGLLNCAVFCAIIPSLATIKPENLLTLSYSICVIF AISIFCIIVFFKYLPLWKIIGSKNVAVGVAACQLIGFPATYLVVNEIINAVAETEEEKKI IHERLMAKYLVAGFVTVTTFSVIVAGIFVKFI >gi|301349783|gb|ADCQ01000067.1| GENE 45 52805 - 54415 1626 536 aa, chain + ## HITS:1 COG:BH0867 KEGG:ns NR:ns ## COG: BH0867 COG0405 # Protein_GI_number: 15613430 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Bacillus halodurans # 2 536 3 539 539 606 56.0 1e-173 MIKFDPQNYPYPSKRNVVYARNGMCNAGNPHAASAGLQTLLKGGNAVDAAVAMASAMPVV EPTGNGLGADCFVILWYEGKMYGLNASGPAPKSLSVAALKDRGFEKIPSYGVEPIDVPGA VAGWMTLHERFGKLPLEEVMAPAIRYAEKGYPVTPNISRLWQEAFENYSKYRDRPEFQGW FDTFAPNNTWLKPGEMFRCPDMAKTLKEIAATKGEAFYRGAIAEKIDAFFKKHNGFLTKE DLAAFKPEWVDPISVNYHGVDVWELPPNGHGITVLMALQILKDMNLAERDCADTMHKQIE AMKLAMVDTAEYVAEPSFMRVSVDQLLSEDYAAKRRALINDKAIMPEPGDPGCPSTVYFC CADADGNMVSFIQSNFRGFGSGIVVPGTGISLNDRAENFKFDENHANALTGGKRPYHTII PGFLTQDGKPLGPFGIMGGWMQPQAHVQVVMNMIDWHLNPQQALDAPRWQWVGGKKVEVE QETPNYIIRQLQRMGHQIVVQPDPYHMGRGQVILRDENGVLCGATEKRTDGQIMSY >gi|301349783|gb|ADCQ01000067.1| GENE 46 54499 - 54747 234 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858805|gb|EFL81893.1| ## NR: gi|302858805|gb|EFL81893.1| hypothetical protein HMPREF0189_01747 [Burkholderiales bacterium 1_1_47] # 1 82 4 85 85 155 100.0 8e-37 MPNNRLDFESIDQVEVFKENGDVIGTVKVSGVRSIEAAIEKALQQLPEAKDPEAYVFKVS NLSDGTERRYRLNAHGHVKLII >gi|301349783|gb|ADCQ01000067.1| GENE 47 54932 - 56401 1731 489 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 38 487 39 478 484 246 37.0 1e-64 MTLNRRSFLVGGAASAATSISTFAHAANPCSTPTTWDKTYDVIVIGSGGAGLSAGIVAKE KGANAVVLEKLSIPGGNTMVSGGGLNAAVEADYKKAGIEDSPQLHTKQTMAAGDFRADPA LVATLCENVPQSVEWLKKVGVQFKPGIYQIYGGLWPRCRNPVGQSGGDYIKACMNYANKI GLPVLTNHKVIGIIREKPDSGRVLGVEVELKDAKKEFWKANKAVVAAAGGFAANPTMCSY FDPRLTKLNTTNQPGSTGEVLKYIQGIGGLAVGLDYIQCIPWTAPGYKHTADIFQAIEYT IFLNKEGKRYVAEDARRDVIRDATLAQTDQTVFPVCDTDGFDKNNEYYNEMNHRALENGT LFKADTIEELAKLIKVPPEVMVATINEYNAMVDSKKDPLGRTPIMLSHKIVKAPFYAGPI GMCRHHTMGGAKINTKAQVLDRDGNVIPGLYAAGEVTGGIHGSNRIGGNAIADIFTFGRI AGEGAASEQ >gi|301349783|gb|ADCQ01000067.1| GENE 48 56749 - 57063 257 104 aa, chain + ## HITS:1 COG:no KEGG:Acfer_1747 NR:ns ## KEGG: Acfer_1747 # Name: not_defined # Def: SAF domain protein # Organism: A.fermentans # Pathway: Pentose and glucuronate interconversions [PATH:afn00040]; Metabolic pathways [PATH:afn01100] # 4 98 5 98 100 82 43.0 5e-15 MSKALHIHSKDNTAVCTSEVKAGEEVEVIDSDGSRSFINAVSSIPFCNKIALIDIQEGEE IFKYGEVIGKAIAFIPKGTLVNHLNIASQPRSYAEEYVLKGKYK >gi|301349783|gb|ADCQ01000067.1| GENE 49 57060 - 58220 900 386 aa, chain + ## HITS:1 COG:STM0650 KEGG:ns NR:ns ## COG: STM0650 COG2721 # Protein_GI_number: 16764027 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Salmonella typhimurium LT2 # 3 379 8 383 390 359 50.0 4e-99 MKFLGFKRKDGSVGVRNHVLILPSCACASETCRVVASQVLGTKNVIINVGCSDVTANTEM TQRVLTGFALNANVFGVVVIGLGCETVGHRELAEKIRMLSDKPVVSFGIQEEGGTIKTAA LAVEAARKMVEEASKLQKVECDASDLFVAIECGGSDATSGIASNPAVGSMADKIYDLGGT TMMSETVEFIGAEHVLAKRGKTPEIHDQIIRICEEYEKHLALAGQDCRSGQPTPGNKVGG LSTIEEKSLGCIHKGGTRPVSEVLQEAARPTKKGALIMDTPGYDISSVTSMVAGGATIVV FTTGRGTPTGHALAPVIKVTGNPLTAERMKDNMDIDVSGILEGEETINQAGERILKEVLE VAGGKVTKAEALGFSDIAVDHVCRYI >gi|301349783|gb|ADCQ01000067.1| GENE 50 58291 - 60840 1821 849 aa, chain - ## HITS:1 COG:Cj0264c KEGG:ns NR:ns ## COG: Cj0264c COG0243 # Protein_GI_number: 15791635 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Campylobacter jejuni # 45 848 9 838 838 657 43.0 0 MTSISRRSFLAVAAASGAEALSNTVSAQEKPSVSEKFKDYPAGAKSAAKYPALPEPLPDL SLTETFSLGKSPLNEGSCITACHWGIVRPQVRGGKMVALHPFEYDYAPSPNINGLCNLPY SASRIHYPMVRESYLKDGPASREKRGTDRWVRVSWDQALDLVANEMKRIYADFGPSAMFG RSYGWMSSGKVNAAINLQQRLLNLCGGFIQTTNSYSTAAIGRILPYVVGMSDPTSTSWDN VLKNSKRVVLWGADPLVTDDIDWVTTLHNAAGYFRALKDSGIKTISINPIATDTAEYLNS EWIAPIPGTDCALMLGMIHELEKTGKCDHNFINKYTSGWKEFNAYVMGKTDGIEKTPAWA SKVTGVPESRIKSLAHELQENRTMIMMGWGIQRIQYGEQPHWMGFALASALGQIGLPGGG IGTNYQYSSGGSPAAYGPFVGGVPASVEPVLPYNKAWKGSKVIPVARFVDCFLHPGKTID FNGTKVTYPEVKMVMWAGGNPFAHQPSTNQLLEAWKIPETVVVTDTCWTATARHADIVLP AATQFEHNDITNIGTYSNDGIVAMQQAIEPQYESKPDYWIFSKLAKRMGCGDQFTEGRSE MDWIKFIYEQSRKFGAQMGVKLPSFENFWKKGYFLYDVRPQERDYVAFANFRKDPKRNSL GTESGLIQIYSPKIASYGYKSCLGHPSYLEPTEGLNTPNKKYPLAYMACKSRYRMHSQLD GTSSHDFANILKREPIWINPENAKSLGIEDGDIVLVKNDRGALLAGAYVTDRIRKDTVVV HHGAWYEPVKVTDGTLLDIHGNSNTLTMDIPTSDLACGNVASSGLISVTKYTGKLSEIKV WDQPETVNQ >gi|301349783|gb|ADCQ01000067.1| GENE 51 61125 - 62636 1176 503 aa, chain - ## HITS:1 COG:FN0685 KEGG:ns NR:ns ## COG: FN0685 COG4145 # Protein_GI_number: 19704020 # Func_class: H Coenzyme transport and metabolism # Function: Na+/panthothenate symporter # Organism: Fusobacterium nucleatum # 39 468 45 471 484 160 28.0 4e-39 MNIGLVILAVYIAVLLGIALYASKKDKKNIKDFATGGGLGIFILTLTFSATYHSAYAFMG AGGFAYKNGIGWWCNGLWTVLPGVLFWVWGRRFWYLGKRYGYLSVSDYASDVYQSKTVGI LVTLITMVFTIPYVAIQAIGCSYIFQTISGGMLSYTVGALIFFAIMIVLVWLGGMKGVAI TDAAQGVFMFAGLLGGSLWVILANFPSVADAYQAAFSHTPELFTMPGPNGVVTAQDWVSR WIVITFGMMMFPQVTLRFFAGKNLNVMKWSAVFSSIYLTMIYVFTPCVGMIGRLLMPDIA APDTIFPELLLKYTPAVFAALIISGALAAAMSTGDSQLHATSTMVATDIYKKFVDKKANE NTLYNVAKIGVLIIGLASVVFALTRPTALADLLVLSNGGVAVLVPAVIGGLYWKKASREG AIASIVIGEICMVSMTFIFKVSPFGFSGALCSMLISLIIFVSVSFITKPQAHTSEVISSI NNYFAEDKAVEETQNNQGALAID >gi|301349783|gb|ADCQ01000067.1| GENE 52 62649 - 62909 297 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858811|gb|EFL81899.1| ## NR: gi|302858811|gb|EFL81899.1| hypothetical protein HMPREF0189_01753 [Burkholderiales bacterium 1_1_47] # 1 86 1 86 86 154 100.0 1e-36 MKLSGHKLFYAVLIVSVLMVNPPIVFWFNDYCVEHPLLFGWPTMYIWLEFWFLVMIADFI VAAYKLKAWDCRQDRKPIVPVQRPEL >gi|301349783|gb|ADCQ01000067.1| GENE 53 62925 - 63473 577 182 aa, chain - ## HITS:1 COG:no KEGG:Kcr_0290 NR:ns ## KEGG: Kcr_0290 # Name: not_defined # Def: creatininase # Organism: K.cryptofilum # Pathway: Arginine and proline metabolism [PATH:kcr00330] # 1 180 51 229 229 177 46.0 2e-43 MVLPGTVTIRPEVLSELTYDIIESLNAHGLNKIILINGHRIVNVVWMQICAQRAQSKLGC TVKIFDPAYMSKDIVKELGFGPVGHAEEVETSHMMARYPDMVHLEKAVDNPIKDTPLYSV DPTYEHDTLCYVPSTIDHARAAAKKSGGCTGEPSKSDARRGQIYHDHLVKNLVSVVEQLQ NA >gi|301349783|gb|ADCQ01000067.1| GENE 54 63509 - 63697 315 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858813|gb|EFL81901.1| ## NR: gi|302858813|gb|EFL81901.1| creatininase [Burkholderiales bacterium 1_1_47] # 1 62 1 62 62 94 100.0 3e-18 MSAWLQTKSWEEAKEAIVKSKGVAIVPIGSVEQHSYHLPLGTDTYVAMTIAEEAAEKTGA QS >gi|301349783|gb|ADCQ01000067.1| GENE 55 64286 - 65092 282 268 aa, chain - ## HITS:1 COG:SMa1073 KEGG:ns NR:ns ## COG: SMa1073 COG1484 # Protein_GI_number: 16263033 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Sinorhizobium meliloti # 27 261 15 244 245 90 30.0 3e-18 MKDTRNTGKNPQSLAERVHRMTKELHLPGFRQRMEETLEDATWQQMTSLEQIYDLLNAEI VRREANTAVKLRRHSNLPLDLINARFEELYESDNRRWDTRLMALVRDGQWMLRETPADLI LSGACGVGKSFLAGCCANYMLDRRHSVYFIRAGRLFMDLKVHRVNNTLEKRKAELKRIDL LILDDFLIEDMSEEDCADLLDIINDRNRLKPTIYTSQFKLEGWIERLGNSAMTQAVIDRI AHSSYRLHLEGSSQRRSVEVKENLSNHR >gi|301349783|gb|ADCQ01000067.1| GENE 56 65108 - 66709 781 533 aa, chain - ## HITS:1 COG:AGl6 KEGG:ns NR:ns ## COG: AGl6 COG4584 # Protein_GI_number: 15890093 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 362 41 394 530 102 26.0 1e-21 MSSVDIREVLKLQERKMSLRQIANRLGLHHTTVCRWVQRAKELGLDYQTVSKVEDQQLHS LFCKVKGPKEEAFYPVDVEAICDAIDQGRVKILDSYMQYLEQAKTSDLPPLKRSGFYYRV KQYWHAHYGNKGRVMAQEWEPGKYLLIDYAGDKILLNSSRSNAVKNCRVFVAVLPFSRMV YWYATPDMTTESWIEGLQNAFDFFKGVPSYIILDNDTALVNHAEKGNQRYTKGLLDLAQF YEVALSPARVGHPQDKGLVEEAVKDVTDKFIKKISPGSLTSVNDVNFLLEKELEDFNCAK MARYGISRRKWFELEQPKLRSLPKNKFFYGAEILRRKVRINGCIQFHTHEYMVPPEYFSH SVGVYVKDGQLLRIVDPLSNHLITEYKYYRPGEPDELEGFLHIKPEYRLPGELTPAGRLE KSCEEFRQLSKSAGLFLSKYLKINNRSEKGELANRLRYMVKKLKTVSPETLELSFTHAVE TGIYEKSAFLNCVKAFATGMPTKKEKKKKTSENSECLRPLEEFFSFLGNNTIQ >gi|301349783|gb|ADCQ01000067.1| GENE 57 67107 - 67259 121 50 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858816|gb|EFL81904.1| ## NR: gi|302858816|gb|EFL81904.1| disulfide bond formation protein, DsbB family [Burkholderiales bacterium 1_1_47] # 1 50 1 50 50 85 100.0 1e-15 MVLGVHTYFWAEVVFWALIILLGVMFFFAPRVLGPASENGNNWRTLNCWG >gi|301349783|gb|ADCQ01000067.1| GENE 58 67326 - 67802 36 158 aa, chain + ## HITS:1 COG:MJ0014 KEGG:ns NR:ns ## COG: MJ0014 COG2452 # Protein_GI_number: 15668185 # Func_class: L Replication, recombination and repair # Function: Predicted site-specific integrase-resolvase # Organism: Methanococcus jannaschii # 14 143 9 143 213 84 36.0 5e-17 MGGVSRREIHNLMTIGEIAGSFGVCVATVRRWCKNGKFSRVIRTIKNQRRFDPDEVHEML HPTRGKRIMVGYARVSSYDQRSDLTAQAERLSQYGCQPVIKDLGSGLNCKKPGLKRLLKL LLTGRVGALVVTHDDRLLRFGTELFHRSPHGHPYRHLR >gi|301349783|gb|ADCQ01000067.1| GENE 59 69660 - 70133 296 157 aa, chain + ## HITS:1 COG:no KEGG:JJD26997_0017 NR:ns ## KEGG: JJD26997_0017 # Name: not_defined # Def: DsbB family disulfide bond formation protein # Organism: C.jejuni_doylei # Pathway: not_defined # 4 143 353 490 508 146 53.0 3e-34 MYRFVQLPDNGEDHFLALGRGRVDTVRSKFHHVMSAASEGEYNYMATVPNNRDHKTFVIS KQLMQDMVTSGEFTPKTNLLKEGRSLGELYVTGLSMYEGKLFAVSKNFNCIFEIDPKNEM IVKAFALPASLDDVRGLIADKDGFKVLNRNVLVTLRD >gi|301349783|gb|ADCQ01000067.1| GENE 60 70213 - 71655 917 480 aa, chain - ## HITS:1 COG:CAC3444 KEGG:ns NR:ns ## COG: CAC3444 COG0534 # Protein_GI_number: 15896685 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Clostridium acetobutylicum # 28 464 13 448 462 234 34.0 2e-61 MRAMATKDKRTEQLFSLIRNGAQLNVWDQIELVWRLSLPAIFAQISFVMVQYIDAAMVGH LGANPAASIGLVSSSLWLVWGLITSVTAGFTVQVAQRIGAKQFDEARSVLRQSLFVGGLI SIAIAIVGVALAPYVPTWLGGAPELYADARTYFAIFCLGTPAAFLGFVASSMLRSTGNVK LPSMINIGMCFLDAIFNLLLIFPTATYKIPGLSITVPGADLGVAGAALGTILAESVSTFL LLWFLVVKSDKIALVGHPGSFLPEIFCMRRVARIGSPIALERMAMSSAQIVTTMIVAPLG PLSLAAHSFAITAESLCYMPGYGVADAASTIVGQSIGAKRPDMARRFSKINVIMVMVIMS AMGVVMYLTAPWMIGFMTTNQSIIELGSSALRIEAFAEPMFAAAIVSCSIFVSAGFTLFP SLMNLGSMWLIRIPLAYYLASRMGLDGVWVAMAFELCFRGAIFLFALSRFDFSKRRGIED >gi|301349783|gb|ADCQ01000067.1| GENE 61 72031 - 73326 1114 431 aa, chain + ## HITS:1 COG:MJ0326 KEGG:ns NR:ns ## COG: MJ0326 COG2252 # Protein_GI_number: 15668500 # Func_class: R General function prediction only # Function: Permeases # Organism: Methanococcus jannaschii # 3 424 4 427 436 349 47.0 7e-96 MNQLLPKYFGFDPATTTIRTEIIAGVSTFLTMAYILAVNPAILGITGMDKGALFATTAIT SGIATLIMALYAKMPFGLAPGMGINAFFAYTVCLSMGHTWQFALTAVLLEGLIFILLTVT NVREKIVYSLPPSIQKAIGVGIGLFIAFIGLQNAGISVKNDATLVALGQIFQPSVLLVIV GLISTAVLLVKNIPGALLIGIAITTICGIPFGLTHLDGFVSTPPSVEPIFMKFEWHNIFT VDMVMVVFSFLFMDLFDTLGTLVSLLYKGGFVKDGKMPRMKESFFADAVGTTIGACMGTS AISTYVESAAGVSVGGKSGLTAFVIAVCFFLSLFFAPLFLSIPAQATAPVLILVGFLMIS CIKEIDLDDYAEAIPAFICIITIPLTYSIANGIVFGLLSYVLINLISGKFKKIRIEMYLL SVFFIVMLLLH >gi|301349783|gb|ADCQ01000067.1| GENE 62 73530 - 74687 998 385 aa, chain + ## HITS:1 COG:CC1071 KEGG:ns NR:ns ## COG: CC1071 COG0079 # Protein_GI_number: 16125323 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Caulobacter vibrioides # 2 370 6 377 409 137 29.0 4e-32 MSNSLALRRRTFLNFGLLGAAVSAALPVKAFAQAPANVSFIAPTADNPIRINFNENALGM SPSAQAAARDAVAKGNRYAKAEITQLHTKLCDMYNVPKNFLLLTDGSSEGIRALLGAYSR LPKVQLVIPELTYGDGEHFANLYNVPVVKVPMLADWKVDVAGLKKAVDGFDGFSIVYFVN PNNPTSTVTPASEIELWVKSKPDNTLFISDEAYAEYVSDPNFKSMANLIQDGLDNVVLLK TFSKLYAMAGMRVGFAVGAPAIIKMMKDQVAGEKLNYPGVTAALVSLDDEPFQEYSRASN LESRKILASCFDKLGVKYLPSSTNFMFFELNEPIRAFQKKMAARNILVGRPFPPAMNWCR ISLGTPQEMAYVANELTKMRAEGVF >gi|301349783|gb|ADCQ01000067.1| GENE 63 74757 - 75092 295 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858823|gb|EFL81911.1| ## NR: gi|302858823|gb|EFL81911.1| hypothetical protein HMPREF0189_01765 [Burkholderiales bacterium 1_1_47] # 1 111 1 111 111 176 100.0 5e-43 MWRLIFPILGAILFGAHLYFWGNYLLFPIPVILLILLFIPFRPVCWLWEICLICFGVEWL ISAYQLYLRRIAAGMPFALGTSILVACGILTMLSAIAFFSHKVKNRYPLHV >gi|301349783|gb|ADCQ01000067.1| GENE 64 75291 - 76211 1051 306 aa, chain - ## HITS:1 COG:no KEGG:Ddes_0825 NR:ns ## KEGG: Ddes_0825 # Name: not_defined # Def: hypothetical protein # Organism: D.desulfuricans_ATCC27774 # Pathway: not_defined # 20 212 24 224 320 89 37.0 2e-16 MNMTNMNNPKPWAEGHPSLYEGHDITHRPDWANIIVWDAFFNNLTAGFMVLTGIAWFAGP PLFAALLPFALTLALLIVIVDLVLLVFDLGDPPRFIHAMRVLHFTSPLSVGVWGLACYAT CLGCAVGIYWLSVYSVATNDFLAPYIAWLDILMRLFTVLAFIGAVVVICYKGVAFSCTSQ PGVRKARWLTSFMVSDALLMGCGLYAIMAACLGFWDACAYLLLPFIILEVARAAAFSLLW METAERARKVYSGENTLLRVWVYLIGGLLAAVLAFFGVYGMCAAGALVLLTGVFERYWLI GITKKI >gi|301349783|gb|ADCQ01000067.1| GENE 65 76222 - 77154 716 310 aa, chain - ## HITS:1 COG:PM0407 KEGG:ns NR:ns ## COG: PM0407 COG0437 # Protein_GI_number: 15602272 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Pasteurella multocida # 46 280 30 245 302 159 40.0 4e-39 MKPIDSKNIFDVVKKGYAADQPKKNGRIDPIYSLFDRDNPLPKCQELAFFTDTSICTGCK ACEVACKQWNQLESDPYHWSGDSYDNTGDLSANNWRHVKFIERFPKKNEVDRPAPATLDA LLKEPKAGKWLFMSDQCKHCRTSPCHEACPTGAIVRNEFGGVYYQTDICMGCGMCVAACP FGVPEISPKTGHSMKCAECYDRLKDGLRPACQEACTTGAIQFGPRELMVREARDRVNYLI THGHPEAQLYGVDPFENYDSLNSFYLLMDKPEVYGLPSDPVTPTKYMAGDYLRGAATLIL CAAAVAACLV >gi|301349783|gb|ADCQ01000067.1| GENE 66 77157 - 80093 3053 978 aa, chain - ## HITS:1 COG:STM1570 KEGG:ns NR:ns ## COG: STM1570 COG0243 # Protein_GI_number: 16764914 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 2 941 113 1014 1015 580 38.0 1e-165 MYRAPGSDHWEEVTLDWMLDTVAKRIWDTRNKGFVEKDPATGITVNNCANIGFIGGSAND NEECYLFRKLFTGGLGILPVENSARYCHSTTVAALSPTFGFGACTNPPRDLLNSDCILIM GSNMAEAHPCAFYWPMQAKKKGAVTIHVDPRYTRTSAACDHHVHIRPETDIAFLSAVIRY ILEKGLWFKEYVLAYTNASTIINPNFNFDDVTGLFNGWDPATRSYSKEPDSWDYEYEMNP DGSRGAPKTDPTLQDPHCVFQLLKKQVEKYTPEASANICGCRPCDIVKVAELLAQNSGPD RTSAFCYATGFTQHSAGSQIIRTCAILQTLLGNIGRPGGGILALRGHSNVQGATDIPTLF ADLPNYIPLPKVAKGNATLKDYLANGHGFSGARNKTDGMWKLETERGSWASLPNYMVSLL KAWYGDYAMKENEYGFQWLPKLGGNESLTVTIERAKKGEVDGLLVFGQNIAVTNPNTGWG RTAIRNLKWLVVCDLFENETASVWYADPNGPKPSEVQTEVFYLPTNSCLEKDGSVSNTER LMQWHDRIKEAPGECRSDAWWTYQLGKRLKAMAEASGLPRDEGLRSLTWSYNMPQGKQNE MGLPPIEGDCDLDAVAYEMNGFDMVTGKPIQGSGELKSDGTTACGCRLLAGFINEAGENL TKRRDGGTVDHELDLTYRFAWPTNSRILYNRCSAAPDGKPWSERKKLVWWDEIEQKWTGY DKPQFDATKPPSYRPAPDAKGGAALDGTAAFGAHSDGKAWLFVPYGIKEGPFPVFYESVE SPYTNTLWSTSRVPDVTIIDDPMNKVTEPGDPNFPTVMTTYHMVEHWMSGSMTRTIPWLV GLQPRSFIEISPELAESIGVTTGGYVSVKSPRNEIQVRALVTPRLRIGVIEGRQASIAGR FVCSGYKGIVCDPITNDLSPADMAGDGLIPSSKSFVVKIDKPDMSKVEKFNEYPVEYPAG MSEPIPDTPWAAQPEERN >gi|301349783|gb|ADCQ01000067.1| GENE 67 80653 - 81807 844 384 aa, chain - ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 4 352 1 338 382 65 24.0 1e-10 MHGLKFAALTAALAIPCFMTGQVHAKSQITLFGVVDDGVVHTYQKKNDKGKKTVKNVTEL RSGVYRGARWGIKGTEDLGNGYSVGFMLDSGFRDDDGGQTMNRLFGRESTLNVMGPCGEL YLGRIGAITSAAGPMAVAAWYTPFGSSCGQFAVTSLSYMFNFQRVDNSVSYRSPKIGDAR FLLQYSRDVDALEDIDPDTAGVQHGEEGKRTTGHYYATGFQFNNGKLDFNLGADHLTYAK KTTGEKPKSSYSVTFGGSVKYDRLKIYGGAQVFWHGTSAWLFTYNKLWAKTYLNGFAVVG GAEYKILGGLAMIAAGFNKTRSASSYPYSKSTLSGLSLGYAYPFTKRTNIYFLVNSAYAT QKYDGQKKSRAFVTEEAIGLTHFF >gi|301349783|gb|ADCQ01000067.1| GENE 68 82000 - 83481 1603 493 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 13 490 24 477 484 160 30.0 6e-39 MSCLNKLSLCLLLSALPAVSVTAADIEKLNTDVVVVGGGGTGMSAAASAHQHGAKVILLE KLAFVGGSSALSGGALAAGESNPQKRAGTKDVSNEGFVNIWLKDQDRSFPGGDESMPKLD RMQKLAKEFNTTVNWMESDIGHKFAVPRPFGYGGPNYAHAPAEAPIPASGRGSAHAGGRF VIKAFKAYLDQAGVPIMTGTRAEELITDNKGNVIGVRATKGKQKIEIRAKAVVLGTGGFA RNKELLQKFVPSYAPYTDVSNATPGSTGDGIIMAQKIGAAGFKDGWVMGISPVSYKRELN NTLRTKNVFKDDVFVNQDGKRFVKEDLPYIVDPIAAQKAAWAILDSKDPAKNELLSKYND PEIVVHGNTWEELAKAMGVPGAALKSTMDQYNEACKNKKDPAFNKMPEFLLPFDKAPFYA VRVVPSTMGTIGGLQTNDKFQVLRADGSVIKGLYAGGETANRPFYRRVYTSGTGLGLAYT SGRIAGANAAQEK >gi|301349783|gb|ADCQ01000067.1| GENE 69 83562 - 84581 1315 339 aa, chain - ## HITS:1 COG:AGc2623 KEGG:ns NR:ns ## COG: AGc2623 COG2159 # Protein_GI_number: 15888748 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase of the TIM-barrel fold # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 136 339 83 291 291 60 24.0 4e-09 MKRRAFFASTVAAAFGSASALAQTASNQFKFPENVDENAVNPPPGQVPYRSNIPVFDFRI RPPYKGYMNLGIIKAWRNIPTDPRKMRPTGFERRHVESIAKADMNLLVKEMEEANVIGGV LMGRETMNPVYGGVPNEDLAELCEKYPGKFVAFAGICPHDPKALEKMEYAIKTLGMKGVS LDPGWCDPAIQAYDKKIYPIVDLASQLNVPVAYAMSAYTGPDLTYTDPSKMMPMLKQYKN VNFILCHGAWPHVQEVLGLAAVCPNLYLVPDAYFYVRNMPFADEFVKAANSFMKYRMLFG TGYPIRGFEQCVENWSNRGLTNESLRLSLFENAKYLLNL >gi|301349783|gb|ADCQ01000067.1| GENE 70 84817 - 86688 678 623 aa, chain + ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 94 604 48 559 592 115 22.0 3e-25 MLIRFADKDIQPQANERLGFMKSFVLCLTKEAPLRRVFDSVLFFLFLCFWGLISAGFSAA ADSTSSQVQKDHPVEVFLERTKGGNSQFYIPESANLLVGSLGDQNWEVLSYDRPELVSVL RHNAPDFIFTNSDLGAVLQRYLHYKHLLSFKNRVSTDAGKLSGSLIVISKNSNIQNLDEL AGKKIGRLATSSMAGWKTAVGEATARGFTTQDFFRRIQSFPDNEEMINALINGDISAAIL QGCHYERLPVGLREQLKPLEPREFTETRCLSTSELYPAWSLLASPKVPEQMQMKVLGALK NERALSEFGEWTAPAPLRDVYALLKRSGDELIDEFEPETWTDLLWKMRYPTLFVLLILFS LFIHDRLVVKEVAKQTALVKEGLRKQWAIEKKMETWERASIVSIMSSMVAHELKQPLTVI ENYTQSLISRQKQGSGVISEEMLSFVLPKIEKSVLKAIDIIDHVQGFSKNRPLVLKPTDI SKLLSKVTADFQAKNPEIKLQKNFAPGLVIDGDEFELSIAFLNILKNAAQAMNGQEAPEI EVSSAPAKEEGFVRVSITDNGPGLKPEEIENLRNPLQTSKADGLGLGLSIVRAIAERHRG SVRIEAGQTKGLSIVLLLGRHVE >gi|301349783|gb|ADCQ01000067.1| GENE 71 86730 - 87347 453 205 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 14 197 17 205 210 140 42.0 2e-33 MSQQNLHEIMVIRIVDDDEELLTSFRFLLEGEGWFVRTYNSAESFLEKDNFNVPGCVIVD IRMTGMSGLELQDVLNARGIKLPLIFLSGHGTVETVVDTLKSGAVTFLSKPPSLDKLKEA IENALKHAKEIDDQKEDFRNWQSLTSKEKEVARLVSEGLLNKQIADELGIAERTVQTHRT MVYRKLDAKNNIEVYKILSKLKVLS >gi|301349783|gb|ADCQ01000067.1| GENE 72 87773 - 88747 369 324 aa, chain - ## HITS:1 COG:NMB0290 KEGG:ns NR:ns ## COG: NMB0290 COG0583 # Protein_GI_number: 15676212 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Neisseria meningitidis MC58 # 5 303 2 298 303 79 24.0 7e-15 MKASDQIQVWKLFLDLRNSGSIRKTAEQYGHDSAEISRTLSKLEKELKVPLLDRRSRPFR LTEMGEEIFPLVEDMLGRFEEILEKIEQKTNRESAVIRIMVPNTFVSISHSLFFEYIKFF PKHKIRVITPVNTEEFRKGSADIVAVTGNVTLPDTVLIPRGRMIFVPVAAPSFIEKYGLL NHPDRLAEVPVGHTFGGDKFSHTPFDSVCKQGKRSRLHLRQQIEWSSPNLLFESVLAGEC ASPGMPLFYCIDALRTGKLVPILDGWHRASQFNYLACHSSRWNVPYIRTFMSWFAERFAA KEAQYEKEFAELFGEELLHELMSS Prediction of potential genes in microbial genomes Time: Fri May 13 07:12:42 2011 Seq name: gi|301349782|gb|ADCQ01000068.1| Burkholderiales bacterium 1_1_47 cont1.68, whole genome shotgun sequence Length of sequence - 19740 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 6, operones - 4 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 192 - 251 2.1 1 1 Op 1 . + CDS 310 - 2070 1642 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2 1 Op 2 . + CDS 2095 - 2196 89 ## + Term 2212 - 2259 10.7 - Term 2199 - 2246 9.1 3 2 Op 1 . - CDS 2409 - 3371 324 ## COG0582 Integrase - Prom 3397 - 3456 5.3 4 2 Op 2 . - CDS 3586 - 4095 452 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 4143 - 4202 5.5 - Term 4400 - 4441 6.0 5 3 Op 1 . - CDS 4497 - 5159 554 ## gi|302858837|gb|EFL81925.1| conserved hypothetical protein - Prom 5192 - 5251 2.8 6 3 Op 2 . - CDS 5266 - 11436 1705 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 11470 - 11529 5.0 + Prom 12145 - 12204 5.7 7 4 Tu 1 . + CDS 12320 - 14866 1963 ## COG0642 Signal transduction histidine kinase + Term 14893 - 14930 6.1 - Term 15025 - 15069 13.0 8 5 Op 1 . - CDS 15119 - 16264 1184 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 9 5 Op 2 . - CDS 16268 - 17713 1865 ## COG1757 Na+/H+ antiporter - Prom 17734 - 17793 3.0 - Term 18158 - 18205 8.7 10 6 Tu 1 . - CDS 18236 - 19048 965 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 19151 - 19210 2.1 Predicted protein(s) >gi|301349782|gb|ADCQ01000068.1| GENE 1 310 - 2070 1642 586 aa, chain + ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 90 584 1 476 484 241 36.0 3e-63 MNTTARFHLTAAAFGVLIASSAYAETNQVYSYTVQAHNAPMTVDVIMKDGKIANILTDNR ESPGVGKLAIANLSKKIIRNQTINVDNVTGASVTSMALKYAVKKNLEAAGADLSKFQDKL PKAQLKDSYNSEVVIIGGGGAGLAAAASVIEAGGTAIIVEKLGYLGGSTVVSGGGYNAVD PERQNRQNIEDSIERHFQDTMRGGHNKNNPELVKKLVEEAPATMHWLEGKGLGFGPKVRV IVGGLHPRGHGAEGGGYGYIRVLEKFIKAYPDKVKVFTDTQAVKLIKNDAGKVVGVVGKH DGKDVKFMASKGVIIATGGFGSNVEMRQAKNTGVWKEVTLDKNIPCTNNFKASQGDGLKL AEQVGANVINLDDIQLHPGGTPKTGIMSSWPSGRNRIFLTPQGDRFVNEDAARDTLCKAI FKEGGNYWIVSNHVKYPTLDYLSKNLTIGEMIKLGQAFSGNTIEELAQKTGMDPKKLRAS IDTYNNVVTGKIKEDNLGFKKFTQDDKPMTEGPFYATPMVPAVHHTMGGIQINSAAQVLD KNGQVIPGLFAAGEVTGGVHGSNRVGGNGIADAMVFGRVSGQTALK >gi|301349782|gb|ADCQ01000068.1| GENE 2 2095 - 2196 89 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDILFRKMLAKRRAYSAAGPEDRSATVIAMELS >gi|301349782|gb|ADCQ01000068.1| GENE 3 2409 - 3371 324 320 aa, chain - ## HITS:1 COG:alr7203 KEGG:ns NR:ns ## COG: alr7203 COG0582 # Protein_GI_number: 17233219 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Nostoc sp. PCC 7120 # 21 316 19 309 319 107 28.0 3e-23 MFQSTPIQPSNFGAITADQNLIENPALMYLATLGSKDSYRCMKSKLNKFARFFGYKGLVD CDWKSMQPNHVTVFLTAQSWGSARTYNCYLSALKSVALNAWRNKQIDLDHFQRIKSLKQR RVFRAPSGRAISSEESASLIKSLEANSLRTVRNRAIFYLMLGCGLRRAEVCELKVKQVSL KSRSAKIIGKGNKERNIYFPDAVLDVLKIWFEFRQLNKNESDAGFVFGRIDNKQRLHLDI ALDPSSVTRIIKKLVSETENLEGRLTPHDLRRTFATRLISKNVDIVEVQKLMGHASVATT GNYVRKDEENLRMAAEKVEL >gi|301349782|gb|ADCQ01000068.1| GENE 4 3586 - 4095 452 169 aa, chain - ## HITS:1 COG:AGl997 KEGG:ns NR:ns ## COG: AGl997 COG1917 # Protein_GI_number: 15890615 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 53 166 39 151 151 87 38.0 1e-17 MEEKLKKSAFVAALLFTAFSCVNVIAAETVPANFQIYKEAKSLSKVPANSKVFTGKAEVI PMSQQIPGMPVHNGIVIFEPGARTFWHIHPTGQFFTVLQGEGRTGVYEEKARVVKPGDVV ICPAGVKHFHGAGPDTQMVQMTVTGDHPEGKGVTWLEEVTDEQYNNIEK >gi|301349782|gb|ADCQ01000068.1| GENE 5 4497 - 5159 554 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858837|gb|EFL81925.1| ## NR: gi|302858837|gb|EFL81925.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 220 10 229 229 426 100.0 1e-118 MLLAAVTLGLSACASYDHKDYPRESWFAPSTQVISADQFKKVETPLKVALVVNYTWEGRP IVQEPFEERPADWREQYGLELAAARYLEKTGNFIIVDPDDKEKQGVISIDVTRQMDEKTK AALASKKANQNEYPEKIVYEYDMTMKMELSLTDGKKFEAIPKTDHMFIGHEESEERKVGV NPKRFTFSYFNNMDFHTEFVRRFYKQMIFEGVQQIENELQ >gi|301349782|gb|ADCQ01000068.1| GENE 6 5266 - 11436 1705 2056 aa, chain - ## HITS:1 COG:STM3757_2 KEGG:ns NR:ns ## COG: STM3757_2 COG3468 # Protein_GI_number: 16767041 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Salmonella typhimurium LT2 # 1744 2056 177 496 496 175 35.0 8e-43 MFTHTQRSKFYDLSCSDCLRLKVTGFKRNYLPYLSVLPFCLVALSTSFAFNSEAAEVPQP TENTTHEISGGGVFQFRQEEFTANLIEITGSIYQGDSSAIIGGYATDYAVKGNIVESKWG NLNSAYIERLIIAGSLSNWADTTKEGIVAGNKVILNNEDPNDKKSTLCGIIGGKVQGSGS LTAKNNQIQVDGLVEYESWYVGEVIGAQVVEGFGVAENNTVSISNGSHRGDVIGAEGTNN TSQTTVSSNAVNIVNATTYGYVYGGRIESLSAGASGVVLGNTVTFGISETPGSSVTPGVS VADGAIGGYYDGSLGKVEITKNQVFLNAGTKVNNYVYGGYIASTGAGNIIENKVTLTKAT INGLGGVVGGYHLGQGDVRGNVVTLKDDTTVISYVVGGYSKGPSGNVTGNKVTVENSTVG GFEYKNEAGEVIGVLGYIYGGYIASSEGEGNITENVVTLTKTTLKGATGVVGGWHSGKGT VTGNHVNLHQSEINSFVIGGHTTGLGDVKENYVFADNTTVNGYVYGGFFNNSTNGGVAIG NQVTLTNVTVKGDGVAGGYNSGKGSEGNESSSTQRVAIGNTVKISNNDSTSNSVINLFVA GGLTGYYSDSPNFYWNINNNFVNLESTAGSLTVNGYVAGGFNQATGQANGNTVCINCIKA TNSIRDSAETSKVTINQYVIGGYISGINASEDTKTSASNNTVIIKNNGGIISIGSYVGGG SSYTKGATESSGNSVTIKSENSRISIGSWVYGGLIGSGGTGAADYNTVTLENGDVLSQYV AGAVHQGTGSATYNKVFLTNTNVNGFVSGGLDWGDGQGPETGVTLDHNRVEMTGGQVTGR VVGARSVTKGSSVSDNSVKILNAKIKKDEAQNYKGHVLGGANQAGGNALKNVVLVENSTV DGYIGGGFIEGGQDGYTDNNIVTVNNSNVGSNIAAGYNQAGGKVEANNNHVTIVIDTATE GETYTFGGFVSGGIIGKEKLINQNDFWGSGSANLNTVTIDNLSVKNTLSIAGYVAGGYFD GAGTGSANINTVRIGTDSPSDTQIHIGYVLGGFVGAAKKDAAGKEVQTLGDTSDNQVFVN NTQIKLYVVGGYNRSSLGNAERNVIELNNVSLLDDSGEINEHFVAGGLIEQAGNGNAYKN TVQLTNSNIRVKYVAGGVSQGNGQVNENTVVLVDTAVQGLVVGGLDWGDKNVSLYGNKVS ITGGLVKEVSGEELTGRVVGARSIGSGDVSLNFVQLQDVELVEGAVRGGVSAGGGSSLNN RVEILQSHIKKSVAGGYIEAHLPGEVGDVLGNSVLINDSSVDDNVEGGFNQVSGKGNASQ NTVQINGTTKITGFVAGAVIGKQSEGNTDGNQVTITANAGSSIAIGGYVAGGFNDGKGHG AVGNIVWLEAASVSTSKLTVDNFVVGGYLRSGEGSTNGNTVVIKNAVVSGPYIAAGLNEG LGQAQNNSVILENADVTGGVTGGRVTAAQTSNRRSLNVANSNIGESSNNYSALVQNNTVN ISGKTSVVGWVVGGESLAGNSVTDKPAYIQNNTVVIDDGYVEGRISGGAAVAGNVIGNKV FLNGGTIKGLVYGGTSAGDVKNNVVYLDGRKGIDVTGAWIYGRGRATTGTNGNTLNITNF KGAMQNIGNFDRIDLDLAGLMVREKEPIILLTENQSTNLDNSTIHIHSSRKAIAVTDDSS LADRYEVIKNQSGSLTAFNVVYEKDKLVVCEQGPMEGLYRVEWDGYPDQIGDSIDLVLER VWERPESGAYISNSLAWSRMHMRLHDRFGQAYYIDPFSGEERAAAGWVRQVGSHSHFRAG SDIKTHSRTAVTQIGTDLIRNEFNQDIKSVWGIFAGGLYNRSSAKTYNSAQSRSDGYALG VYGTLYTGNSPDDGFYVDSWLLFGHYNNKLWSDDLANFRYKSNGWVWSVESGYTIPLSQS GSKDFNKLIWTFQPEIQLVWDGVKADTTVDKDTETRFKQLGTNNVSLRIGARLHANHMNK GLGFIEGNWIHNTKRAGVQMGTGCKYIKGGRNLAEFRAGLEGHVTKNLLGWATVGVQAGQ YGYHNETAQIGLKYMF >gi|301349782|gb|ADCQ01000068.1| GENE 7 12320 - 14866 1963 848 aa, chain + ## HITS:1 COG:CC0723_1 KEGG:ns NR:ns ## COG: CC0723_1 COG0642 # Protein_GI_number: 16124976 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Caulobacter vibrioides # 317 572 210 462 473 187 41.0 7e-47 MCFLVAVYTITSIVFLLQVNQYTQDIYDFPYLVSSQARIMKSRLYDFRSLTPVLFSSKDL NSAQLESALKTQEALQQQSITIIEDRYRGSPEELQELKDALKNIGQRRRELVELTREDPT VENVIKRYNQIVEPAFIHFDDILDRIASNADQRGSDINDKSDRNIYGFVIGTIIMGILLL WFIYTGSKDLNRAYVKGLKRDKLLKLLYANVDDVFIIFNEKKEPEYVSDNSLRILGFDPD AITNNKEELLNRFYDEDRNWLRNILNDRTIIKTATRNIELKGSSQTFQLSVYPVRQGLID WTVVSLFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALS RISDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYEKFDLQETVHSIYNLI EPQAKEKGVSFEIVTNDVNQECLVGDQLRVNQVFINVIANAVKFTPRGGKVTMKLSEKQT SPEHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGG NIDVQSEEGKGSTFTIDLPFGISKDSAKHSESLLELRALVIDDDKDTCEHACVLLDQLGQ KTEYALSGKEGIEKIKQAMQDNDPFDICFLDWKMPEMDGEATAREIRKIVGPETLIIIIS AYDWSPIEGRAKEIGINGFIAKPFFSSSFYNWLSDPSIKENKGRDKDIVVQENTKKKRVL LAEDNEFNAEVAQDFLDMAGYTAEVVGDGAQAVKAFETHEPGYYSMIFMDIQMPVMNGLE AAQMIRALLREDAHTIPIVAMTANAFSEDVSKSLNAGMNDHISKPIDLKKLHAVLGKYGD RNEKTANE >gi|301349782|gb|ADCQ01000068.1| GENE 8 15119 - 16264 1184 381 aa, chain - ## HITS:1 COG:MK1581 KEGG:ns NR:ns ## COG: MK1581 COG0624 # Protein_GI_number: 20095017 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Methanopyrus kandleri AV19 # 10 371 25 370 381 110 30.0 3e-24 MEKLFQRWYDLISIDSVSGHEVGAADYVAEVLRSMGLEPHYSYFPEDTDRQRPSVWTVLD SGKPGKTMLLIGHIDTVDVNLKNWKTNPFMPTEIDGKVYGRGSMDMKGGDAAILSTVEYF AQHKDEFSGKILVCFVADEEGLSKGTYQLVDEDVVHADYAIMAECRYNNVAVGFRGRFSF EITVKGKAGHASRYPEVGENALISAGRLAAAIEALPTLPHPKLHHGTWCVRYLAGGNSGA LVVPDSCYMFVDRYVVPGEDEAMCIRQMQEAAEKLGLADKVNIHLKPRNSPYMKSFAVPE DHELVVKLQESFKEVTGEDLPIDYDPSVCDSNILAVSCGIPVVTFGPSGGNMHGDNEYGY PYQVKNCYEIYKKTVKKLLPA >gi|301349782|gb|ADCQ01000068.1| GENE 9 16268 - 17713 1865 481 aa, chain - ## HITS:1 COG:BS_mleN KEGG:ns NR:ns ## COG: BS_mleN COG1757 # Protein_GI_number: 16079413 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Bacillus subtilis # 13 472 10 468 468 241 33.0 3e-63 MSQTNSSSRLAPWQAMTMLAVGIAIIFFGLMALKVNARIVLAVDGAIMCLMACAFGISYD SVQKGIKDTIASMLVAMLILLSVGILIGSWMASGTIPVMVYYGMQVITPALFLPVACILC TLMSTLAGTSWGTLATVGVACMGVGEGLGIPVEAAAGAVCVGAFFGDKISPLSDSPVITA TVTDTPLMEGIKHALISTGPAYLISLVFFFVYGLEFSGGSAAESATYVEILRTIEKSFNL NPICLLPVFVVIGLIAWKKPTIPTFVAGIAVAAFLGMFLQDVSLKNMMNYMYGGFSIHTD SAFVDKMLNRGGFTSMLSTIGLLMTAAIFGAPLRTAGVADVLLDYVRKFARNSRVMAFCV MCLHTLFFMITGAYYVSYPVVGSMTKDMFPKYGLQRKNLMRMMLDTGTGLAPLVPWSTTG SYTASTLGVANIAFFAFAPMLWLSIILSAVYALTGIGMAKLEEETVEQEEGGRFNGQLAK E >gi|301349782|gb|ADCQ01000068.1| GENE 10 18236 - 19048 965 270 aa, chain - ## HITS:1 COG:RSc3386 KEGG:ns NR:ns ## COG: RSc3386 COG1464 # Protein_GI_number: 17548103 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Ralstonia solanacearum # 28 269 287 529 529 208 45.0 1e-53 MQRFQFLKLAAAAVIAVPLLLSGCGDKKTAELKVGATAGPHAANVQKAAEVAKKQGLNVK VIEFTDYISPNKSLEEGSLDIVIYQHEPFLNNFNKQQGTHLKNIGVAVVQPMGFYSKNIH SLKDIPDGATFAIPNDPSNEGRGLQLIEKAGLIKLQPGKDGSAITVADIIDNPKHLKFKE LEAAQLPRSLSDVDIATIPMNYVISAGLSPEKDGFYYESKEAPYALIIIAARENNANNAD VQKFVKAFQSPEVAKFIKEEFKGAVVPAWE Prediction of potential genes in microbial genomes Time: Fri May 13 07:13:16 2011 Seq name: gi|301349781|gb|ADCQ01000069.1| Burkholderiales bacterium 1_1_47 cont1.69, whole genome shotgun sequence Length of sequence - 16043 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 4, operones - 4 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 182 - 228 -1.0 1 1 Op 1 8/0.000 - CDS 312 - 962 506 ## COG4566 Response regulator 2 1 Op 2 . - CDS 949 - 2727 990 ## COG0642 Signal transduction histidine kinase - Prom 2872 - 2931 5.7 - Term 2929 - 2961 6.3 3 2 Op 1 10/0.000 - CDS 3014 - 3610 672 ## COG0526 Thiol-disulfide isomerase and thioredoxins 4 2 Op 2 7/0.000 - CDS 3607 - 3996 374 ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes 5 2 Op 3 . - CDS 3993 - 5699 1152 ## COG1138 Cytochrome c biogenesis factor - Prom 5769 - 5828 1.7 - Term 5799 - 5829 0.2 6 3 Op 1 24/0.000 - CDS 5895 - 6704 322 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 7 3 Op 2 6/0.000 - CDS 6701 - 7525 701 ## COG1131 ABC-type multidrug transport system, ATPase component 8 3 Op 3 . - CDS 7570 - 8847 683 ## COG3420 Nitrous oxidase accessory protein 9 3 Op 4 . - CDS 8850 - 9350 560 ## COG4314 Predicted lipoprotein involved in nitrous oxide reduction - Prom 9377 - 9436 2.0 - Term 9395 - 9445 12.3 10 4 Op 1 8/0.000 - CDS 9449 - 10387 1229 ## COG3301 Formate-dependent nitrite reductase, membrane component 11 4 Op 2 . - CDS 10390 - 11133 618 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 12 4 Op 3 . - CDS 11172 - 11822 607 ## COG4235 Cytochrome c biogenesis factor 13 4 Op 4 . - CDS 11848 - 12642 891 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 14 4 Op 5 . - CDS 12693 - 13118 415 ## Ssed_0483 rhodanese domain-containing protein 15 4 Op 6 . - CDS 13184 - 15229 2598 ## Sbal195_4002 cytochrome c, putative - Prom 15350 - 15409 2.3 Predicted protein(s) >gi|301349781|gb|ADCQ01000069.1| GENE 1 312 - 962 506 216 aa, chain - ## HITS:1 COG:RSc1597 KEGG:ns NR:ns ## COG: RSc1597 COG4566 # Protein_GI_number: 17546316 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Ralstonia solanacearum # 12 194 15 198 210 146 44.0 2e-35 MGLDKLQEKAVVRIIDDDDSMRKSWRFLIEGEGWTTKCYSSALRFLEEDDRNELGCVVLD VRMPDMSGIELQRVMMLQKNGLPIIFVSGHGDIDMAVQALKDGATDFLPKPVSADRLLTA IERAVSKDVERRQQNQLTDEYRHVFDTLTAREKMVAKKVARGLLNKQIADELQISEKTVQ VHRGAVCRKLGVKSAVGVASILSILHEEDSSSEDIR >gi|301349781|gb|ADCQ01000069.1| GENE 2 949 - 2727 990 592 aa, chain - ## HITS:1 COG:PM0724 KEGG:ns NR:ns ## COG: PM0724 COG0642 # Protein_GI_number: 15602589 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pasteurella multocida # 121 582 120 564 571 143 28.0 1e-33 MRWILLILCGLISAYAQASQLNNLLPPVRLAVVNSFGSNLSVRYFNGTVNAIAKAVAPRR LVVQFYDQEVFLEAAQNKGFDLAIASSGLTALMTDASGAAALLTIINSRTPDPNHANAGV IVVRSDRDDINCLADLKGKTVAVSSTKAFAGFLAVMGEIQAEGLNPNRLFKSVTATHKPM TELVKQVVNKEVDVAFIASCLLENMEADGVIPKGCLKVINEKKDENFFCKHSTRLYPGWI LSAQPTLNSKTLRKIMEALLQLPPGKEEGSYWTVATDYDQMNLLLQRMEVRYLEDRTIGW MLNYYRWYFIVGCGALLLIILNWAYLAFAVRRKTEQLRKKVEENREYERENRKITERIEA LEKAKSIGIISAMVAHELKQPLGAINNYSEAILRQLKRGKKPAEEILTEALSEIKSESQR ASEIVEFVRNIGRKEPRQRKRFNLESAVEHTIELMKRLGRLNSKCTLTGAENLFVYADPL NVDLVLMNLLKNAEEAVRNQQNAEIKVEIKNAGADALVIIEDNGPDMTDDQFASLRNLGQ SSKKDGLGLGLAIVRELLEANGGSLKLVRIPSGGLRCIASLPIALEDKDGPG >gi|301349781|gb|ADCQ01000069.1| GENE 3 3014 - 3610 672 198 aa, chain - ## HITS:1 COG:TP0100 KEGG:ns NR:ns ## COG: TP0100 COG0526 # Protein_GI_number: 15639094 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Treponema pallidum # 63 189 73 198 200 86 33.0 3e-17 MNLSFKLLVAAAVFVASFAVGAQTIFSTSGYSTGEALEKPMVMKPFVEFSKARPLPELRI FTLEGEKVDLAKYRGKLLILNVWGTWCTPCIREIPQLIDLQKQLKGSNIEIVGVAVDKSV AGISKFLARHKMSEFNTWSDPTESIEDVMPLEVVPTNYIIDGAGNIVGYLPGYLPWDDKD VMPFLKKLAEKYAKPKAN >gi|301349781|gb|ADCQ01000069.1| GENE 4 3607 - 3996 374 129 aa, chain - ## HITS:1 COG:PA1482 KEGG:ns NR:ns ## COG: PA1482 COG3088 # Protein_GI_number: 15596679 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Pseudomonas aeruginosa # 22 125 27 130 155 77 37.0 5e-15 MRLALRLILCFFIAFSTSSTVLAAPSIREQAIEISKELRDPGAVNQSLYESNAPQAAELK AKIYQLLENGESRENVLEYFASRYGKQIRYDPPVDPWTAALWVVPAVLFAGLVLTALFLI FRRKKENPE >gi|301349781|gb|ADCQ01000069.1| GENE 5 3993 - 5699 1152 568 aa, chain - ## HITS:1 COG:HI1094 KEGG:ns NR:ns ## COG: HI1094 COG1138 # Protein_GI_number: 16273022 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Haemophilus influenzae # 2 562 57 639 648 380 38.0 1e-105 MLIWAFLTNDFSIAYVANNSNTKLDPVYKISAVWGSHEGSMLLWVWTITVWASLFAIFSR DDELFKSRVLGVLLGVTGLICLFLIFTSNPFERLLPLVPPEGKDLNPILQDIGMILHPPM LFLGYAGTALCFAFGLGALMEGKVRPESLRGLTTISVIAWLFLTSGNVIGSWWAYNELGW GGWWFWDPVENSSFVPWLLMTAQLHALVLLRFRAHLTKTVLFFCIVSFALCLLGTFIVRS GVIQSVHAFASDPNRGAFLLVISLLMVVPALFLFMIRAPKFESAKQISGIEDISLVLAVL LLAVTAVCVLFGTLYPLVHEALGKGSLSVGAPYFNSIFAPMAILAALMIGAVQLKKSPMW TWGATFILSAIAALYCGFFTEVKSSVYTTAGVFSALWIICSFMASLRSKKHKNFFALVAH LGIAVSIIGVIGDTQYSQEAVVRMGPGQGRPLGDVIFVYEETRKVDTNAFFADEGKVLVL NKNEDVIDELHPQRQTYKSNGMEMTAAGISHGFFRDFYVSMGNRLSSDEFLVRLSIRPLV SWIWIGGLIMLLSAVFSSAWRRREWSQS >gi|301349781|gb|ADCQ01000069.1| GENE 6 5895 - 6704 322 269 aa, chain - ## HITS:1 COG:RSp1372 KEGG:ns NR:ns ## COG: RSp1372 COG1277 # Protein_GI_number: 17549591 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Ralstonia solanacearum # 8 229 9 226 274 108 39.0 8e-24 MRSFLSSVRVVAAKEFRDCWRNLWLIVGSALFACLSLAVVFGTAAIGGDFSFRPLEAVMT SVVTLGVFLIPLIAVLISYDAFVGEQEHGTLILLLTYPLSRPALLTGKLLGQSAALGVCL LLGFSVLPLLTVLNVLPYDLTRLSLLTAVLIFSGWLLGLVFILISLTISLLAKNKARALG VLLSIWLLSVLFYDLGLLIITIAFEHQITNGFLNICLAVNPASAFRLFNQQLLENSTIPL QTAWLGVYLCLWSAVLFVLDRFILNKRTF >gi|301349781|gb|ADCQ01000069.1| GENE 7 6701 - 7525 701 274 aa, chain - ## HITS:1 COG:BMEII0971 KEGG:ns NR:ns ## COG: BMEII0971 COG1131 # Protein_GI_number: 17989316 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Brucella melitensis # 3 197 41 239 331 174 46.0 1e-43 MVLDDISLSVAQGEFVALIGHNGAGKSTLIKLCLGLITPKKGKVKVLGGRPGASPISVGY LPENVSFYDGMTIRDNLNYFADLKNIPRQRADELIESLGLSTVAAQKVGQCSKGQRQRLG LAQALLAKPKLLFLDEPTVGLDPTASDFMYQELLKLKERGCTVIVCTHELMLVEGFANRI VMLVGGHKAADGTIRILSEKMGLSFELVSSDALNAARQDEFLRSSIIDGRLVCKGTDLSQ KLIYLEKKYGITGVGVKNPSLMDIYKAALKEHQK >gi|301349781|gb|ADCQ01000069.1| GENE 8 7570 - 8847 683 425 aa, chain - ## HITS:1 COG:PA3393 KEGG:ns NR:ns ## COG: PA3393 COG3420 # Protein_GI_number: 15598589 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrous oxidase accessory protein # Organism: Pseudomonas aeruginosa # 31 417 33 422 428 271 36.0 2e-72 MRKVPLLFLLFFPLFCSAAHWDVSTSQELHDALSKAAAGDEIVISPGTYEGTFSIPTSLS LRGSKDSIIDAAGKGSCLEIKASGIQVSGLTLKNYGADLYERNSGVLINEGSEDILLKDL KIEGTGFGIRADKSEKIHIEGCEIRGNKRKHVLDRGDGVYFNYVKNAVLQNNKVRYTRDG FYFENTDRTQSSGNYFAALQYGIHYMYTRGDSAWNNEAEACIGGYALMSSEKIRLFDNLS KRTVEFGVLLNETDASEVSNNHVERVKNPRGKPSLDTEGKGIFIYGGGINTVEGNSFEAC DIGAGVAMGGEGTVLHNNRFVGNRLQVRYIGSSSVEWSREGVGNYWSSYQGWDLNQDGVG DIPYQPNDSLDRLFWLYPQSRFLMDSPLVVFLRFITAQFQLDKGKGIVDSNPIMHDPIST NKGTL >gi|301349781|gb|ADCQ01000069.1| GENE 9 8850 - 9350 560 166 aa, chain - ## HITS:1 COG:SMa1186 KEGG:ns NR:ns ## COG: SMa1186 COG4314 # Protein_GI_number: 16263100 # Func_class: C Energy production and conversion # Function: Predicted lipoprotein involved in nitrous oxide reduction # Organism: Sinorhizobium meliloti # 5 158 3 159 185 93 31.0 2e-19 MEKLIQVFCTVAAAALLAGCSGKSEDKIPGPVAFDKHDRCHICGMVILNYPGAKAQVFVK GEKEPLKFCSVKDGFVYVLQPENAKRTVAFWVSDFGNKKDIPLHEKMLSAQKAFFNAGSD VRGAMGKSILPFATKGDVEAFTKEHGGTIVNYSEVNLGLLKSLKGH >gi|301349781|gb|ADCQ01000069.1| GENE 10 9449 - 10387 1229 312 aa, chain - ## HITS:1 COG:PM0026 KEGG:ns NR:ns ## COG: PM0026 COG3301 # Protein_GI_number: 15601891 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Pasteurella multocida # 12 309 10 316 319 146 34.0 4e-35 MLDFTIGLTEGVAWPWPIAVYLFLAGISGGAVAVAICVNLFRGVHLNTPIMKAATLIGFI TIVLGMICLVLDLTNPLFFWRILVYYNPTSVMSIGVMALLFYIPLVFVLMCVALQQEITS VSWLKWLDPIISFFAKFRVALDWIVLILAIAICAYTGFLISALIRFPLINTAVLPALFVA SGFSAGCAATKVLAAWLFGADRHGSDLHVLHAAEWPIMAVEALCLLMIIIALVSGNAAAQ AAFAAFTTGMWAQVFWVGAVGIGFLIPLALSFFGSKAFRTGATAFYTSGLAAICGMMCLR LFIIYAGQINSI >gi|301349781|gb|ADCQ01000069.1| GENE 11 10390 - 11133 618 247 aa, chain - ## HITS:1 COG:ECs5054 KEGG:ns NR:ns ## COG: ECs5054 COG0437 # Protein_GI_number: 15834308 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 52 240 37 214 223 182 52.0 6e-46 MSANIDRRTFLAGTTAGSLVLLSLGGCNKPDENKGAIKTSAGSDSGQAKPHYAMVFDQNK CIGCGLCKEACNETNKLPKGVSRLVLERQTTHVPGTACPICGKLEGCDCERVYVRVSCQQ CQDAPCVRVCPTGAAHRDPKTGIVTMDPDRCVGCKYCIAACPYNVRYINSETKVADNCDF CLKTKLANGEEPACVQACRHGALYFGDVNDPQSIISRLLRVKDTVRIRPHLGTEPSLRYV TVQKEGV >gi|301349781|gb|ADCQ01000069.1| GENE 12 11172 - 11822 607 216 aa, chain - ## HITS:1 COG:STM4282 KEGG:ns NR:ns ## COG: STM4282 COG4235 # Protein_GI_number: 16767532 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Salmonella typhimurium LT2 # 66 209 56 199 206 70 31.0 2e-12 MIGLAASIAIVVFLVCIVFIVYALRSRAARSHISILSLIILLLIGSSLGVYASVGRFSDW ERAQVDNTKDHRLAAKITQARRVAMNKPRSVEARRDLAGLYMQGGLFGESAKTLDEALTI TGPNAGLYGDKARALYYRDHRQMTPEVKLTLEKALSLNPTEASSRMLLAEHAFRNKDYAA AISEWETIIKAHSAPEREAAIQRAIANAREKLAQSK >gi|301349781|gb|ADCQ01000069.1| GENE 13 11848 - 12642 891 264 aa, chain - ## HITS:1 COG:YPO0195 KEGG:ns NR:ns ## COG: YPO0195 COG0545 # Protein_GI_number: 16120534 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Yersinia pestis # 2 229 3 242 266 130 36.0 3e-30 MSILKKTMLSVALTFVFVGSALAQDMTPEAKESYSLGASLGNYLSSQAFKQSELGAPVNM DLVVEGLMDALKNKSKLSEEEIVTSLNTRAEKLNQLHEAKVKEVKEKNRAESLAYLEKNK KKKGVKVLASGVQYEELKAGTGPSPKEEDVVTMVYVGKLVNGTPFTNAEGTPAEEKDVVM TLIPGFKEGLSQMKEGGKAVFVIPADKGYGENGAGPVPPESALIFEVTLKKVEKPGANKE SNQAMPAGHPPMNGSRPKMAWPHS >gi|301349781|gb|ADCQ01000069.1| GENE 14 12693 - 13118 415 141 aa, chain - ## HITS:1 COG:no KEGG:Ssed_0483 NR:ns ## KEGG: Ssed_0483 # Name: not_defined # Def: rhodanese domain-containing protein # Organism: S.sediminis # Pathway: not_defined # 3 141 11 151 151 172 59.0 3e-42 MKSKILQAAMISFLCLYPQINFAGGGGEPVEAPVYDELLNQISMREAEMLWQAGIPFYDV NTLEVWTQGYIPGAKFFNVRNWKKLLPENKDQTMVFYCVNKLCTASEMAAREVMKLGYTD VRQMPDGIEGWKLSGRKVERP >gi|301349781|gb|ADCQ01000069.1| GENE 15 13184 - 15229 2598 681 aa, chain - ## HITS:1 COG:no KEGG:Sbal195_4002 NR:ns ## KEGG: Sbal195_4002 # Name: not_defined # Def: cytochrome c, putative # Organism: S.baltica_OS195 # Pathway: not_defined # 1 678 1 686 687 885 61.0 0 MLRETRKTAIGLGLAAAMATSCVYAADGQPLPTPKVNEITQKVWANPDLTEPTKGIRTLQ DYIVQEKELWDFLFQNHPIFATYGKDGRVIGTPVISTRGSEYLGEGNAQKYSAHQDGNRP MASQYRLGQRSILDFPNKFVGPEKCGECHAIQYEQWKRSRHAKTVRFPGEHPEVDNDLKK KLYGSEASILPDGITADVIYATIGTPRTKYGYIDGWLVRGSYHVRDGLLKDGTGKVVAGG NQFSRGWAEWLTPEKAKEIQKLIPDFPTELSQFGPSASHQWGMTSYGSTYEGKLLFQAAS SYCEVCHAFKFDFKDKKEFFAALGNPKELQKHTISRGIACEECHGEGGHLVGNTNNMSTN CDRCHQRLNFIEDEVDRPDAKGKLEKAFNAKTKSSCPSCGTEGAQLFMSKHYEKGMRCVT CHDPHEVTSNDWTSGVTRPAIRKNCQDCHTTQAQMVANADTHSKVDCIACHMPFTMSCEN FTAIQRPDMAGFDAVRRSHLFKIMVDPDKKMMNPGPGQSRASNSKGWRISRDEEGHGYVD LMWSCARTSIADFTVVEGKGCHSPFQSELDQGLIYQDQKEIYGEVMKWQNPIKEGHQKNV EALTRINKLLEVTKLTPEQRTEAMLLIDKAGEIIKQVQDDGSWGVHAFNYTKQRVETAQA YLTKAQSIIDQGGYKAVKATK Prediction of potential genes in microbial genomes Time: Fri May 13 07:13:51 2011 Seq name: gi|301349780|gb|ADCQ01000070.1| Burkholderiales bacterium 1_1_47 cont1.70, whole genome shotgun sequence Length of sequence - 45427 bp Number of predicted genes - 41, with homology - 37 Number of transcription units - 28, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 290 - 322 1.2 1 1 Op 1 . - CDS 328 - 771 72 ## gi|302858859|gb|EFL81947.1| hypothetical protein HMPREF0189_01801 2 1 Op 2 . - CDS 768 - 2876 1437 ## COG2217 Cation transport ATPase 3 1 Op 3 . - CDS 2925 - 3215 401 ## gi|302858861|gb|EFL81949.1| conserved hypothetical protein - Prom 3441 - 3500 3.7 + Prom 3397 - 3456 7.3 4 2 Tu 1 . + CDS 3498 - 4595 1308 ## COG0498 Threonine synthase + Prom 4617 - 4676 4.1 5 3 Tu 1 . + CDS 4702 - 5151 499 ## COG1522 Transcriptional regulators + Term 5180 - 5214 3.0 6 4 Tu 1 . + CDS 5255 - 5848 455 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Term 5883 - 5914 0.0 7 5 Tu 1 . - CDS 5954 - 6181 92 ## + Prom 5924 - 5983 1.8 8 6 Tu 1 . + CDS 6057 - 7496 1304 ## COG0531 Amino acid transporters + Prom 7518 - 7577 4.4 9 7 Tu 1 . + CDS 7655 - 8761 1307 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 8802 - 8843 7.1 + Prom 9076 - 9135 5.3 10 8 Tu 1 . + CDS 9192 - 9320 125 ## + Term 9407 - 9448 2.4 + Prom 9363 - 9422 3.3 11 9 Op 1 5/0.000 + CDS 9466 - 10176 738 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 12 9 Op 2 . + CDS 10198 - 12291 2637 ## COG2414 Aldehyde:ferredoxin oxidoreductase 13 9 Op 3 . + CDS 12307 - 13143 851 ## DMR_29720 hypothetical protein 14 9 Op 4 . + CDS 13169 - 14245 1095 ## Shew_0348 cytochrome c, putative 15 9 Op 5 8/0.000 + CDS 14286 - 14954 645 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 16 9 Op 6 . + CDS 14956 - 15882 1015 ## COG3301 Formate-dependent nitrite reductase, membrane component + Term 15915 - 15953 4.1 + Prom 15961 - 16020 4.5 17 10 Tu 1 . + CDS 16167 - 17768 345 ## THA_904 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain - Term 17968 - 18012 6.5 18 11 Tu 1 . - CDS 18030 - 19622 1450 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 19714 - 19773 2.1 + Prom 19809 - 19868 4.4 19 12 Tu 1 . + CDS 19912 - 20058 87 ## + Term 20210 - 20247 7.1 - Term 20155 - 20191 3.0 20 13 Tu 1 . - CDS 20238 - 20864 413 ## COG2180 Nitrate reductase delta subunit - Prom 20987 - 21046 2.8 21 14 Op 1 10/0.000 + CDS 21036 - 22331 1279 ## COG2223 Nitrate/nitrite transporter 22 14 Op 2 13/0.000 + CDS 22377 - 26138 3488 ## COG5013 Nitrate reductase alpha subunit 23 14 Op 3 . + CDS 26135 - 27739 1544 ## COG1140 Nitrate reductase beta subunit 24 14 Op 4 . + CDS 27739 - 28452 482 ## COG2181 Nitrate reductase gamma subunit + Term 28476 - 28510 5.1 + Prom 28793 - 28852 5.4 25 15 Op 1 . + CDS 28980 - 30317 1252 ## COG3203 Outer membrane protein (porin) 26 15 Op 2 . + CDS 30424 - 31329 720 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit + Term 31358 - 31396 9.4 - Term 31423 - 31468 7.4 27 16 Op 1 . - CDS 31486 - 32574 965 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 28 16 Op 2 . - CDS 32555 - 33040 248 ## COG0790 FOG: TPR repeat, SEL1 subfamily - Prom 33095 - 33154 5.6 29 17 Tu 1 . - CDS 33251 - 33886 294 ## COG1280 Putative threonine efflux protein - Prom 33917 - 33976 4.8 - Term 33945 - 33986 7.4 30 18 Tu 1 . - CDS 34041 - 35144 1285 ## COG3203 Outer membrane protein (porin) - Prom 35254 - 35313 6.8 31 19 Tu 1 . - CDS 35739 - 35918 265 ## - Prom 36070 - 36129 4.3 - Term 35974 - 36031 -0.3 32 20 Tu 1 . - CDS 36162 - 36989 58 ## COG0266 Formamidopyrimidine-DNA glycosylase - Prom 37224 - 37283 2.9 + Prom 37276 - 37335 1.9 33 21 Tu 1 . + CDS 37355 - 37807 233 ## gi|302858889|gb|EFL81977.1| hypothetical protein HMPREF0189_01831 + Prom 37850 - 37909 3.1 34 22 Tu 1 . + CDS 38027 - 38305 446 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 38328 - 38366 -0.8 - Term 38316 - 38354 6.0 35 23 Op 1 1/0.200 - CDS 38381 - 39574 1134 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 36 23 Op 2 . - CDS 39609 - 40370 445 ## COG0583 Transcriptional regulator - Prom 40521 - 40580 5.6 37 24 Tu 1 . + CDS 40629 - 41264 606 ## COG1280 Putative threonine efflux protein + Term 41375 - 41421 5.2 + Prom 41691 - 41750 7.8 38 25 Tu 1 . + CDS 41822 - 42232 531 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 42271 - 42325 16.0 - Term 42265 - 42305 -0.2 39 26 Tu 1 . - CDS 42441 - 43343 217 ## COG1397 ADP-ribosylglycohydrolase - Prom 43518 - 43577 7.2 + Prom 43401 - 43460 1.8 40 27 Tu 1 . + CDS 43512 - 44033 218 ## gi|302858896|gb|EFL81984.1| putative LexA repressor - Term 44076 - 44118 10.1 41 28 Tu 1 . - CDS 44140 - 45288 1644 ## COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Predicted protein(s) >gi|301349780|gb|ADCQ01000070.1| GENE 1 328 - 771 72 147 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858859|gb|EFL81947.1| ## NR: gi|302858859|gb|EFL81947.1| hypothetical protein HMPREF0189_01801 [Burkholderiales bacterium 1_1_47] # 18 147 1 130 130 250 99.0 2e-65 MTFLDQYIVSRTKSRMRLRIPQLKSNETAVKIFDEVRNVAGIETADINETTGSLLIRFVP ELFDEQQLEKILQHNLEGLPVSSRCAPEKILRSKELRRVENGSMMLFGGATLASILLKNW KLHTYAGIAYTVFTLLHMYRYRKTLTR >gi|301349780|gb|ADCQ01000070.1| GENE 2 768 - 2876 1437 702 aa, chain - ## HITS:1 COG:SP2101 KEGG:ns NR:ns ## COG: SP2101 COG2217 # Protein_GI_number: 15901916 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Streptococcus pneumoniae TIGR4 # 1 677 1 677 687 382 32.0 1e-105 MDFRVVSKTRHRARFRSDFKFGFEAAEQLADKIELISGIEGVEVNARTGSVLIVYKVEGA FEKTRSLLGEEIETLNSMPKTIPKGSSLVSDVAFWPAVRLVARNLIPFPLRLGLFINSVK DIFYDGFGGLFKGKLSVEVLDMSSILLALIMRDFKTASTTALLLGLGERLEEWTRRKTMA NLTESLAVNVDTVWIEKDGIELEVPFGSLTEKDTVIVRAGSAIPVDGEVIGGEGMVNQVS MTGEPLPVHRYCASTVFAGTTLEEGKLLIRPTGIGSETRLNKIVSFIESSEKAKASIEGQ AVRLADRIVPYSFLLAGVVGLATRNLAKVAAVLMVDYSCALKLATPIAFLSAMKEAANHK ILIKGGKYLEALAKVDTVVFDKTGTLTVSSPKVAEVVSLDPDWTEDEVLKISACLEEHFP HPVARAVVKAAEQKNLAHEEEHAEVEYIVGHGIASKLRGQHLVIGSRHFVEEDEGVSCAF AQNQIEAIASKGHSVLYLAMGQKLIGLIGIEDPLRDESKYVIARLRQMGIPHIVMITGDG EKTAANVAARLGITEFYSQVLPDGKSAIVSRLEKEGRRVLMIGDGINDTPALSAASVGVS LSDGADLAKEVASVVLLGSDLTHLPLALELGRRTYARIKTNFRTTIGLNTAYLVGGLAGL IMPATGAVLHNATTLGVAWNAQRAKLPGDTSDYAPFLLEFAQ >gi|301349780|gb|ADCQ01000070.1| GENE 3 2925 - 3215 401 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858861|gb|EFL81949.1| ## NR: gi|302858861|gb|EFL81949.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 96 1 96 96 132 100.0 1e-29 MGENNKVLLGVLSGVLLGAFGAAVVKRGNLRPHAAKVLSYGYDIKDAIIEQAETLKETCE DLAAEAKEKYEDRKAEEQKPAVTPAPTVVPEDSKKE >gi|301349780|gb|ADCQ01000070.1| GENE 4 3498 - 4595 1308 365 aa, chain + ## HITS:1 COG:Ta0495 KEGG:ns NR:ns ## COG: Ta0495 COG0498 # Protein_GI_number: 16081612 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Thermoplasma acidophilum # 66 364 44 333 334 200 35.0 4e-51 MSYICTNCGKETPTSTFHNACECGGLFSLPQDHLPLWQESLIDKSVWSQFRYHAFMNLDG DVWRRVSMGEGMTPIVSYNGSVFLKMDFMMPTLSFKDRGAATLVSHMKAIGVKKCVQDSS GNAGVAVAAYCARSGIACEIYVPEGTSPNKIAMIEGFGAKAVVVPGTRDHCAEVCRSKVK EEGAYYANHVYNPYFYEGTKAYIYETFEQLKRIPRHIFIELGNGTLFIGAVLALEHLMRS GVIDEFPQLIAVQSENCAPFYETEEQGSSSLVEVTPKPTLAEGIAIGKPARADEVLDMIR RHNVKVITAPEDRILPCREEMAKRGFYVEHTTAAALAAYYRYCEKFDPTEDALLSLCGAG LKSEH >gi|301349780|gb|ADCQ01000070.1| GENE 5 4702 - 5151 499 149 aa, chain + ## HITS:1 COG:mlr0363 KEGG:ns NR:ns ## COG: mlr0363 COG1522 # Protein_GI_number: 13470605 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 1 143 3 145 157 103 34.0 1e-22 MDKYDKEILSVLLENGKIQLSELSKKTNLSVSSCQRRVKNLEESGVIESYQAVVNPKLVG MGFQALVFITLSQAAGEKITEFEKALEKIPCIIEAHRIFGEQDYVLLVATPDLTAYQEAY DTQLSSLPNIKKVETTLLMKEIIPHRIIL >gi|301349780|gb|ADCQ01000070.1| GENE 6 5255 - 5848 455 197 aa, chain + ## HITS:1 COG:YPO2299 KEGG:ns NR:ns ## COG: YPO2299 COG0350 # Protein_GI_number: 16122523 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Yersinia pestis # 13 178 1 166 172 129 42.0 4e-30 MRKRPQITTSEAIEPIYISEKRLPCGGALTLGSWNNRLVVADWIDGWHHSTIMNRLQKYT KASVVKSTSKVIEAASDWLDAYFEGSKEPPDFDLLFLGTDFQKRVWQLLLEIPYGETITY GELAQEAGTPKAARAVGVAVGDNPFSIIVPCHRVIGKDKSLTGYGGGFDVKKYLLAHELG TDIENLPFSDCSRRTVG >gi|301349780|gb|ADCQ01000070.1| GENE 7 5954 - 6181 92 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQPYSAILGRFLSEKTEHTVSMAMPLMLMVKAEFGASLSSITILPGTFANRSEGELRAA GELVGRSMGYNRSIY >gi|301349780|gb|ADCQ01000070.1| GENE 8 6057 - 7496 1304 479 aa, chain + ## HITS:1 COG:BMEII0909 KEGG:ns NR:ns ## COG: BMEII0909 COG0531 # Protein_GI_number: 17989254 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Brucella melitensis # 7 460 18 472 510 299 36.0 8e-81 MEDKEAPNSAFTMSIKGMAMLTVCSVFSLRNLPSMAEYGWNIIFFLSAAAACFFIPSALV SAELASTYPQRGGVFIWVKEAFGPKLGFLAIFMEWFQNMPWYPAAVTFVATCIAYIFNPE LASNRWYIFFTAIFLLWLSTFLNFRGMRLSVFLSNSGVVVGTIIPGFFLIVCALTYVWLG KPVQINLDGGKALIPDLSTARQWMLLAGMMVSLAGMEMSSVHVTSMKNPRSSFPKSIYLA TAIILILSVLGALSISLVVPIGDLSKSAGVCQSFELMLNALGVGWLTPILACLLAYGALA SVVTWMNGPSRGLLEVAKEGYLPQYWQYRNSYGMQTRIFILQASLASFLSLSVLIMPSVS DAFWLFLALCSQLYMIMYLLIFAAAIRLKIENPDSPGEYKVPGGRVGMILMSGVAFCTSL IALLCGFIPPEEIINEGLAASLGYVGFLAGGLIIFTIIPLKFFDKFQHQHLTEVKDSAA >gi|301349780|gb|ADCQ01000070.1| GENE 9 7655 - 8761 1307 368 aa, chain + ## HITS:1 COG:BS_amhX KEGG:ns NR:ns ## COG: BS_amhX COG1473 # Protein_GI_number: 16077370 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Bacillus subtilis # 13 365 19 369 389 207 37.0 2e-53 MSFQEAIQYRTELHKLAELSGQEIKTAQYIQNKLEEMGFNVRSGVGGHGLVVDIDSGVAG PMVMLRADIDALPYADPNDPERIEAIHACGHDAHAAILLAAAPEIRKNLKKGKVRLAFQP AEESLQGALAMIKDGVLDGVDIVVGSHIRPVQDLPFGKYCASVNHVACATVEVRIDGKQA HAARPHLGINPIEAASQYIASVGLIKIDPNKSWSVKPTQIHSEVGATNSIPSFVKIAYDL RAQDNAALEAIIGRMKLAAAGLEGCFGAKASCEVTEYCPGPEYDEALGELFKETVAGTFG KETLGTNCGGGGEDFHFYKKAKPELRVLYYGIGSGAAPGLHDRNMNFNEAILPQASQLLV NVVGKILA >gi|301349780|gb|ADCQ01000070.1| GENE 10 9192 - 9320 125 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLHNFISFALSDVSKEENLFIANQAEQLLPFHFFFPPSLDK >gi|301349780|gb|ADCQ01000070.1| GENE 11 9466 - 10176 738 236 aa, chain + ## HITS:1 COG:ECs2381 KEGG:ns NR:ns ## COG: ECs2381 COG0437 # Protein_GI_number: 15831635 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 15 209 19 205 208 120 35.0 2e-27 MLDLKGLLSKARLPMDITRRGFLEVSTVAAAVAAMNAARAQTGAQPYIILSAPKGILIAD PSLCVSCQRCELACTEFNDGKADPRLARIKINRGMFYGTEGTSLTSPHNGAYGSDPVCVQ DTCRQCDHPVPCANACPKGAIRVNPKTGARYVDEETCIGCGLCQKACPWNMMSFDVEKNV ASKCFLCNGDPKCVKACPTEAIRYVPWMDRSKEPTRGVPHGYMPQNNNDQCGICHG >gi|301349780|gb|ADCQ01000070.1| GENE 12 10198 - 12291 2637 697 aa, chain + ## HITS:1 COG:ydhV KEGG:ns NR:ns ## COG: ydhV COG2414 # Protein_GI_number: 16129629 # Func_class: C Energy production and conversion # Function: Aldehyde:ferredoxin oxidoreductase # Organism: Escherichia coli K12 # 8 696 4 698 700 501 38.0 1e-141 MSEAKKYGWTGQGLRINLTTGEITKVPTQKDWIGGTALGYKIFWDEVPPKTQAFDEANKI VIAPGPLTGTGAVCSGRTSVTTMYPTTYPIHEIGSAHLGGDLGAKMKYAGYDFIVIEGKA KEPVYVYVNNDDVQIRKANHIWGEGTRRAAALINQETSPTASVTVIGPAGENLLPMSVII NAKSHTGGGIGGVWGSKNLKGLAIDGDQPIHIAADKEEWEKLVNRNKELLGALTQTVVSR YPHPLFEYHSLNSRWSGMPGKQWGAANPPINVPLDTRRLSKMAFRTNAGEFFLGDREWAR HVRNNGCFACPIRCYPVIKDTATAAKYNVHPITEQTCGGLLFPIFFYPNLKNHPERNIEI AIVGSQLMDDLGLWCNYGQLQRDMIVMYQDGYWKKLLSKEEYDSLPWKKIDDVDASAMQD FLPRIAYRKGEFGKWLGETTPVMLDHFGIPVKTWSDDHRTLYWSNGHPKHHTNEDDGQLG CVLNCMWNRDPMAHAHVNFTRSGLPIKEMKHIAKVTWGDESAVDQIGDYTPTNTYKMKRL QWVIARTELHNMLGLCSWMAPWEYCPDEKNQYVGDPNMEAKIFSAVTGVNKTGDDLDKDG IRAWMLQRVYTMRQLGSSNMRKDHDLVPGWIYTDPKDRKPFTKGTVRMDPDDINKSFDIF FEQVGCDKETGVPTTDTLKAYRLDFVIPVLQKEGLIK >gi|301349780|gb|ADCQ01000070.1| GENE 13 12307 - 13143 851 278 aa, chain + ## HITS:1 COG:no KEGG:DMR_29720 NR:ns ## KEGG: DMR_29720 # Name: not_defined # Def: hypothetical protein # Organism: D.magneticus # Pathway: not_defined # 104 278 54 239 239 87 33.0 7e-16 MSQQENIYELPLFKAHVLLLADIVADFSGKTELAKKGKVKELFLRQVKTAPVPDAAELQA AAETSTDAVLERTLKRKEQQEFEVQLTPQGKVDLYEAEHPNLRPSRKALSRREMLRSLVR GDIHPSDLQTEEELEEELPEDYFETVCKATEESDLGVFSITAPDGAEYLYFKPLMSHSYA RILAVKDNAEALVCDQIRENSRIYPRPVPSQMFLEAPFDFDVPTLECLLQSIGRKEENKD IKFTQTSSGTIFLYSDKYLDDDLAEFLAEEQEMRPLNP >gi|301349780|gb|ADCQ01000070.1| GENE 14 13169 - 14245 1095 358 aa, chain + ## HITS:1 COG:no KEGG:Shew_0348 NR:ns ## KEGG: Shew_0348 # Name: not_defined # Def: cytochrome c, putative # Organism: S.loihica # Pathway: not_defined # 81 353 401 678 679 238 42.0 3e-61 MSTLKTTILLSALACLAMSSTAFAQDNVPVKAPESLKNVPFKIEGVEGFLHSLRIDPRTE IKLSKKELRSLAESNYNDKTAQHFMSVHARHGVGCLSCHDQSEVKGTAWMAYVSNPPMKQ DCKTCHTVQADVFKHTDTHSNLDCIACHMPNMPKPAEYSEDQAKVAGTALYRAHMYKINP SPDKTSYVKKEVKVDGKIVSQYELAKDEKGRDFVDLMWSCARNAPADWTVFEGKGCHSQY TSKLEEGLVYKDQKQVYGELVKWQNPIKEGYKEIRGATERINKLLEVTRLDRDQRTQVLS YVDLATQIADMIEKDGSWGAHAHNYMTQRLAAAQNYVRKAQEILDAGKFSKTAVDPLK >gi|301349780|gb|ADCQ01000070.1| GENE 15 14286 - 14954 645 222 aa, chain + ## HITS:1 COG:ECs5054 KEGG:ns NR:ns ## COG: ECs5054 COG0437 # Protein_GI_number: 15834308 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 216 1 215 223 190 46.0 1e-48 MTIDRRKFLAGTALGAVTAVLLNKQEAKAGNVSGYKPRFAMIFDQNKCVGCGACKEACSE TNHVPAGQLRMTLERQSPLDGTPGNRKYVRVSCQQCSEPPCVRVCPTGAAHIDPATNIVT MDNSRCVGCKYCIAGCPYNVRFINEETKAAENCDFCLHTKLAIGEQPACVQACRYDALVF GDTNDPNSYISKMLAVKNSVRVRAVLGTHPNLHYIPKLKEEV >gi|301349780|gb|ADCQ01000070.1| GENE 16 14956 - 15882 1015 308 aa, chain + ## HITS:1 COG:nrfD KEGG:ns NR:ns ## COG: nrfD COG3301 # Protein_GI_number: 16131899 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Escherichia coli K12 # 17 304 11 315 318 144 35.0 2e-34 MQTTDIVIDFTTGLSGSVAWPWPIAVYLFLAGISGGAVALAIIINLYKGTHADNPQMKAA TMVGLVTILLGMVCLVLDLTDPFNFWRILIFYNPTSVMSIGVAALLFYIPLLFVLTLLVF RDLPILKFLKPLTDFLAHFRVVLDWVVMILAVVICAYTGFLISALIRFPLINTAVLPALF VASGFSAGCAAIRLFAICFGAEREDSSMHILHVAEYPIILVEAMCIFMIAVSLITGTEVA KIAFSAFTTGVWAWVFWLGAIFVGMIVPITLSFFRSAACFYLSCISAIAGMMCLRLFILY AGQLNGLN >gi|301349780|gb|ADCQ01000070.1| GENE 17 16167 - 17768 345 533 aa, chain + ## HITS:1 COG:no KEGG:THA_904 NR:ns ## KEGG: THA_904 # Name: not_defined # Def: conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain # Organism: T.africanus # Pathway: not_defined # 8 523 4 506 518 235 33.0 3e-60 METILAPLPLGTSDFSALRKSGQIYVDKTRLIYTLASKRQKFFLSRPRRFGKSLLLSTFE SLFKYGLRDFYGLEIESLWKDENTYQVIRLDFSNLKGFSSAEEFSELLDQYLLDTLTVNR LVSPIKTDTEGLRAFIGWLADQADNSVVLLLDEYDTPLTTCPNKPELFDEVRKKLWRLYA AFKQWDGAIRFFFMTGIAKFSQTSIFSELNHFTDISLMSEFGSLLGYSHREVQKYFSGYL EQASFQLGIEKEKLLEELTVNYDGFCFERTATQRVFSPWSLLKFLNFPSNGFDNYWYESG GQPGVLLEYLKSHSTLRPEDYESEKQVQLDDLALSAKFSLLEDNVLLAQTGYLTIKAVRG TTVTLGYPNREVSVSMARLYAEAILDKNAINRAGEGYLADYLEDGNLSAFVEEVNRIVLG IDYQAFPLSSEASCRAAVFIMVSSSSTLITARCEAHNAHGRSDLEIQTNKNYWVLEFKYC RKGASPEALLQEAVRQIKARQYGSQLPQSNLIRAALVFSQKGRKFTHWAEVWD >gi|301349780|gb|ADCQ01000070.1| GENE 18 18030 - 19622 1450 530 aa, chain - ## HITS:1 COG:FN0050_2 KEGG:ns NR:ns ## COG: FN0050_2 COG1053 # Protein_GI_number: 19703402 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Fusobacterium nucleatum # 5 524 10 477 484 148 27.0 3e-35 MTTRRQLIKTSLSLAAVPIGMSVAIEVAHAEDMPQWDKETDVLVLGYGNAGSNAAIAAAD AGAKVLILEKTAAGGGNVSVSSGGFVVPTNKEDYYKFQKALYELSRSEWDKDLLDLFCEE SLHLGDYVSSLAPEGKISVYGHAGYQNLPGADCVNKMSMRNVPGAKGGDRLFGIFDRAVK ARNIPVLVNCPARRLVRRGNEVLGVEAIYKGKPYFVKANKAVVICTGGFQSNPELMARYI YGNPMAYLGSPAHTGDGLLMAQSMGCDLWHMNSVSAPLGIQVPGVKAGIAMVTRQPAFIW VDQDGKRFVNEKKLDYHCSWMAVNNFDAINHRYPRIPCYMIMDSSYLKAGPLISNGGSGW AINREGYKWSKDNQKEIDSGVIIKADTVEELAKKLGIADPAVLVATVKRWNSDLREKGID TEYGRTLTADPNMKAVFVGRDVKSWSAPIEEGPFYAVKLVPVTYHTMGGPKKSVKAEVLD PFGEPIPRLYVAGELGSTWGLTYQGACANADAMVFGRVAGKNAAALENWK >gi|301349780|gb|ADCQ01000070.1| GENE 19 19912 - 20058 87 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVLRVNKSNWGEKFWARVVRLPPLFLSIEEQQAVQVCFGPQFKHHSH >gi|301349780|gb|ADCQ01000070.1| GENE 20 20238 - 20864 413 208 aa, chain - ## HITS:1 COG:BMEII0952 KEGG:ns NR:ns ## COG: BMEII0952 COG2180 # Protein_GI_number: 17989297 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Brucella melitensis # 1 171 1 172 235 114 38.0 1e-25 MNFGLKALACLLLYPDAALKDNLPEIKEGVGGSSLSDDQKDKLYIFINHLAETPLSDLQK DYVSTFDIGKKASLNLFEHMHGDSRERGSAMLNLKKLYEERGLSIESDEFPDYLPMFLEF LSGLGYSEAQALLDSAARHIAPIDIALQKSESPWRAVTGAILSLSAMKNSEIKLERDDLL PTTEAESFDSPVRFGGNADPVQTVHFKQ >gi|301349780|gb|ADCQ01000070.1| GENE 21 21036 - 22331 1279 431 aa, chain + ## HITS:1 COG:Cgl1164 KEGG:ns NR:ns ## COG: Cgl1164 COG2223 # Protein_GI_number: 19552414 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Corynebacterium glutamicum # 8 428 14 442 445 310 43.0 3e-84 MRPDIKVWNPENPAQWNKTLAWTTVWLSTFSLTFGFCAWFLVPSLAPRLNEIGFSLTHSQ LYWLVAMVGLSAGTLRILWTFLPPILGTRVLVTFSTGLLLIPLFCWVYAVQHVDTPYWVL LGFALLSGIGGGTFSGLMASTNYFFPKHERGFALGVQGGLSDFGTGLVQFVTPLVIGFSA LACLGSGQVAHLPDGKTITYWLQNAAWVWIPLVALVTILSWLFLRSVPVTANIKQQWAIF GNKHTWFMTLFYYGTFATFAGLGAQLALLGNHTFAGIEGAPSAVALAWLGPVIGALSRVG AGQVSDKIRGGRVTTIMAICNIIGLLALWWYKPTSVAGCWIWLIIMFWIFFWTGVGNAST TEQMAVLFPPLQGGAVVGWTSAIGAYGPFTIGMLLAECGAGVMFGVSTLIFVAILAINIY YYDRKNAPDLC >gi|301349780|gb|ADCQ01000070.1| GENE 22 22377 - 26138 3488 1253 aa, chain + ## HITS:1 COG:RSp0974 KEGG:ns NR:ns ## COG: RSp0974 COG5013 # Protein_GI_number: 17549195 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Ralstonia solanacearum # 1 1245 1 1235 1245 1404 54.0 0 MSGIMKSSLFFTKKVGSYSDGWGEVTGEDRTWEQSYRDRWAHDKIVRSTHGVNCTGSCSW QVYVKDGIVVWETQETDYPPTPAGVPNHEPRGCPRGASYSWYLYSASRVKHPLIRAELKA AWEDARKTMKPIEAWASIVENPQLRKSYTAARGLGGMVRTTWDEALEIIASANLYTIKKY GPDRISGFSPIPGYSMVSYGAGTRYLSLIGGALLSFYDWYCDLPPSSPQTWGEQTDVPES EAWYYSSYIIVWGTNISMTRSPDAHFLTEARYNGTKVVNVCPDYCEVTKDADWWIHPKQA TDAALAMAVSHVIFKEFHYEHPDPYFTEYCRKLTDFPILVTMEPRADGRYTAGRTVRACD LGYKEPECNNPEWKTVVWDELSKAPAVAQGSMGYRWGQKEGQDLGKWNLHEVDGETGKAI KPQLTFLNDSDAVIDVEYPYFGGRERDGFPNNAMASDVMVRRVPAKRVPLNGQDVYVATV FDLFGSYLGVDRGLGGECAKSYADNIPFTPAWQEKITGVEAQYAITLAREFATAASKTQG RACVLMGAGVNQWFQTDNTYRSIINILLMCGTCGVPGGGWCHYVGQEKIRPEAGWSEYSF AKDWEPASRHMNSTSYFYEHTDQWRYERIPLSDMLSPLADTKVFDGTYVDYNIQSELMGW LPSAPQLNVNPTKIAAAAKAAGVQPEQFLINQLKDKKISFSCLDLDAEENWPRNLFIWRS NVLGSSGKGQEYFLRHLLGTENGILGGELDGSNKELMPLMEKWRPAPEGKLDLLVNMDFR MSTTSIYSDIVLPAATFYEKNDINTTDMHSFIHPFVKAVQCSWEGRSDWQTFKDIAKKLS EIAGEYPEDFGNVTDMVLTPLGHDSPHELGQALDVRNWYKGECDLIPGKTAPLIHVVERD YRTIYDKYTSIGPLLSKNGGGNRGIKWDLDPEITELCQLNGTVQEGVAKGRPKMETDINA ANFILRVSPETNGALSYRSWDFVKEQCGVDARFLSEGHIADKITFDDLAHRPAKTFSAPD WSGTENDEIPYVAFWQNKNLLLPWRTITGRQQFYQDHSWMRAFGQQFAQYRAPANQRALT GYKDIADNGNKAIILNFMTAHQKWGIHSSYYDNERMLTLSRGGPVVWMSDIDAANAGIAD NDWIECWNANGAVVGRAVVSSRMPQGLCVMQHATEKTVNTPGSEVTGLRGGDHNSPTRVI VNPTHMIGGYGHLSYAFNYYGTIAPNRDDFAWVRKMNKVDWMDEEADKKGGAV >gi|301349780|gb|ADCQ01000070.1| GENE 23 26135 - 27739 1544 534 aa, chain + ## HITS:1 COG:RSp0975 KEGG:ns NR:ns ## COG: RSp0975 COG1140 # Protein_GI_number: 17549196 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Ralstonia solanacearum # 1 509 1 494 515 652 58.0 0 MKIRAQIGMVLNLDKCIGCHTCSVTCKNVWTNRPGTEYIWFNNVESKPGVGYPKSWEDQQ KWTGGWELHNGKLRLRRGSKLGLLSGIFANSKLPQIDDYYEPFTFDYQNLQKAPRMKTCV TAQPISYLTGKKMKKINNSAAWDDNLGGVDIKTVNDVNLKDVERDIYAQYKNTFLFYLPR LCEHCLNPACVASCPSGSIYKREEDGIVLVDQNKCKGWRMCMSGCPYKKVYYNWSTGKAE KCVFCYPRVESGMPTVCSETCVGRIRYMGVMLYDADKIKDLASTPNEGDLYEAQRQIFLD PNDPDIQAAALKAGISHDWIEAAKASPIYKMISKWKIALPLHPEFRTLPMVWYVPPLSPI AQAVDVGKLSVKGFIPDVESLRIPMQYLANLLAAGNVKPVVDALSRLLAERTILRKYSDA AGISQFLTCEILPEQLEGIEEINELKALGLTVQDVCDMHRLLAIADFKDRFVVPSANRNN TASMLLQGTQGYNLGGGEDMRRRADTIFGGPMNRKIIPLFEEYQRAPDSTQEGK >gi|301349780|gb|ADCQ01000070.1| GENE 24 27739 - 28452 482 237 aa, chain + ## HITS:1 COG:BMEII0953 KEGG:ns NR:ns ## COG: BMEII0953 COG2181 # Protein_GI_number: 17989298 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Brucella melitensis # 11 230 8 225 241 146 39.0 4e-35 MSNFTLVWHFLIFGVLPYVVIAVLVVGSLLRFILAPYSWKSQSSEILDKKDLFWGANLFH IGVIFLFCGHCFGLFTPTAWLNAVGLTPRLHQWMEIIAGGASAALAIAGLLLLTWRRLSN ERVRTASRPSDFWVLFLLLAVIILGICCVVNSYFTDRSGATIILFGEWVRGLFTFDYEAW QKILLVPDWQKWHIFVGLIIFLIVPFTRLVHIWSGYLSVFYLVRPHQIMRANGKPMK >gi|301349780|gb|ADCQ01000070.1| GENE 25 28980 - 30317 1252 445 aa, chain + ## HITS:1 COG:RSc3091 KEGG:ns NR:ns ## COG: RSc3091 COG3203 # Protein_GI_number: 17547810 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 92 420 22 340 376 71 26.0 3e-12 MSKKTLLAIAIAASLTPALAANSADTTSTDSSAPAVSASSSASTSASSVSYKSGPTKRGR GVAFGRGHSGHTLNVSHASAEIANLPMDATSTSITLFGELDAGVKVSKLKGGKTKVQMSN GNWYWTSWGIKGVEDLGGGNAAIFTLQQAFKLNNGEGVASSHGTTSSGGFNNQAFLGLQG PWGRLTFGHQAGLSSGDGDYSMLGGSAIGTGFDMIGDLAGVFLTTSWLDNSIAYRTQEWN GLQFTAMYSNGTDGDDNKWAKNNHYYGVGVTYDVGAFNSNFMFEREDHKSKVAYADGSVK LDPTNYYTLGASYDFGDFTLYGAYQYVSHGTRMPGYNYIHIDKKTGASTTVAEPATKGVN QNAASVSIAAPLWGGTAMLQLNGVKGKIKNTGEKYNAWSIGSGYTYPLSKRTLVYGSINY GDGNKALSESSIDGYSCIFGMATSF >gi|301349780|gb|ADCQ01000070.1| GENE 26 30424 - 31329 720 301 aa, chain + ## HITS:1 COG:VC1693 KEGG:ns NR:ns ## COG: VC1693 COG3005 # Protein_GI_number: 15641697 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Vibrio cholerae # 12 181 24 184 394 67 29.0 3e-11 MATKTKWFFFWLISGSFLAGILAVCFVVSAVNWLGSETFCSTGCHTMNGVAYAWKQGSHA RTPSGKTADCSDCHLYNASENTLGPLGYISLLGHKIVAASHSAYGQVIGHFATPTQWVEQ RPGVEAQEKQWFVDNNYHTCRGCHDLSRMYDPKNPSIGAWHALYQDQPLDCLACHKDVGH NYKQVDAYIDANHAYPPLDEAWVFPVAATTSASPMPPQNLTPEQLKKDALPWTPSSVSSA STSAAQNAPVNQSKDVQQIANELNQKITQPITPNAQNASPASAPKAQATTTASTPAKSTA Q >gi|301349780|gb|ADCQ01000070.1| GENE 27 31486 - 32574 965 362 aa, chain - ## HITS:1 COG:CAC2766 KEGG:ns NR:ns ## COG: CAC2766 COG1477 # Protein_GI_number: 15896021 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Clostridium acetobutylicum # 33 342 9 314 319 174 32.0 2e-43 MKYPNIKLTALMLAAVLTAPVCTAATGDIYNYEFTALGTTISSQIKADNKEKAQFCANVV KKEVLRLEDLLSAYREDSDISRLGKSNGKWIKVSADTAEILEKTKQICAMTHGALDPTVG TLVKMWSVDHSNHRVPTQEEIAKVLPKVDWKKIEIKREGNVIWARIGEGQEITLGATGKG FIADKVAQRLRENGCNDALISLGGNIITLGTSDIGYPWEIGIQEPDNRINSYFAAVPSRD ESVVTSGDYEKFFIKDGKKYHHILNPRTGSPVPATLHSVTIINKESALADGLCTALFVFG FNGAVNYLAEHPELKAVLVDEDNKNVVYTKNLENDFQVVRHTYRYGVIEPKKEVEVGVKK ND >gi|301349780|gb|ADCQ01000070.1| GENE 28 32555 - 33040 248 161 aa, chain - ## HITS:1 COG:HP0211 KEGG:ns NR:ns ## COG: HP0211 COG0790 # Protein_GI_number: 15644839 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Helicobacter pylori 26695 # 26 136 54 172 250 61 34.0 8e-10 MRKSFFFSALILLAATGTHAQDVNTQSCEKGNGQACYLAAIEMHKAKNFGRGADLAQKAC DLNYAQGCFYLGFNNQNGSKYSQCNVFYKKACDLNLGVGCLALANNVRLGIGVNPSLQAA MPFYQKACELGEPLGCSHVKNPGFEGHMGHLSGGKSEISKH >gi|301349780|gb|ADCQ01000070.1| GENE 29 33251 - 33886 294 211 aa, chain - ## HITS:1 COG:STM3959 KEGG:ns NR:ns ## COG: STM3959 COG1280 # Protein_GI_number: 16767229 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Salmonella typhimurium LT2 # 1 202 1 203 206 180 51.0 1e-45 MLSTLFTIAAVHLIALMSPGPDCFIVMQTAVGRSRKEALCCVLGITLGVAFWAALSLLGL QWLFEQFAWLQQLIMFLGGLYLGWLAFLLLRSACNKQTASQQNVPTPRSGFRSFAIGLLT NLSNAKALIYFSSVFSLFITADMETSEAVLIYAVVVLESFFWFSFVALILGLPKPKAFYR KSGRWIDGICGAIFGVFGTALIWTAVKESDL >gi|301349780|gb|ADCQ01000070.1| GENE 30 34041 - 35144 1285 367 aa, chain - ## HITS:1 COG:RSc2108 KEGG:ns NR:ns ## COG: RSc2108 COG3203 # Protein_GI_number: 17546827 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 5 342 2 345 381 90 30.0 4e-18 MKLAKTALVLALASAGTMAAAESQVTLYGTIDGAVVVNKAKGGDATVSLDDGIAGGSVWG LEGSEDLGNGYSVGFLLENGFTMDNGAAGEDGKAFSKQATLSLSGNFGELAFGRMGGLAS YEGSYSIWDASPLGTDYLQGGLGNTFVTGQINNNSIVYVSPEFGGLKIHAQYSNGVEEDT QKWSRNSHYYGLGATYEIGNLSLAGIVERFDNKGAENKDKDKATIVYSLSAAYDFEVAKA FFGYQYASRFHGFDQLEDVTVAGKGMNQNAFTLGAEVPAAGGTFKVAANYGFGKVKSADG VVVGDEKLSNDKFNRFTVGAAYEYPLSKRTFVYGWGAYATAGKMLKEKAVEEDFKSWSLG LGLHHAF >gi|301349780|gb|ADCQ01000070.1| GENE 31 35739 - 35918 265 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDVFTVIWAALSVLILAALVYFVAKKKISVVAFICLLILVVLGIAGFAGLLGVGFKLG >gi|301349780|gb|ADCQ01000070.1| GENE 32 36162 - 36989 58 275 aa, chain - ## HITS:1 COG:RSc0399 KEGG:ns NR:ns ## COG: RSc0399 COG0266 # Protein_GI_number: 17545118 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Ralstonia solanacearum # 1 273 1 288 288 235 45.0 9e-62 MPELPEVEITRLGILKRVGGRRCTGAVVRETRFRKAAPANLSELLKGQCLRSIERRGKYL IWSFDRGYIVSHLGMSGVMRVVDPKATEPVKHDHIDILFGDLAVRYHDPRRFGFLIWLPE SQDPHDLPEIAKLGEEPFSDGFTADRLHSALANTSLPIKEALLTGKYVVGVGNIYCSESL FEACISPLTPANKLSTKRLERLVAAIRQVLTLSLQEGGSTLKDFVSAEGEQGYFTLNAKV YGKAGKPCSCCGRPIKKIVQNKRATYFCSHCQRRE >gi|301349780|gb|ADCQ01000070.1| GENE 33 37355 - 37807 233 150 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858889|gb|EFL81977.1| ## NR: gi|302858889|gb|EFL81977.1| hypothetical protein HMPREF0189_01831 [Burkholderiales bacterium 1_1_47] # 1 150 1 150 150 261 100.0 1e-68 MAKKNTSGIALYKEDLKQSIEELTDLQRKMLSLTLSDLNPEDFNLDKIYPVSVDSFSEFR CQNAEDAYETLIESASALFDKFVMIRGGIEAQTEDEIEFYRWLSQLRYSDKTYSVGLIFS NMVKLYLTDIQEILLKKTEPSVQKELDLFS >gi|301349780|gb|ADCQ01000070.1| GENE 34 38027 - 38305 446 92 aa, chain + ## HITS:1 COG:SMc01906 KEGG:ns NR:ns ## COG: SMc01906 COG0776 # Protein_GI_number: 15965011 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Sinorhizobium meliloti # 1 90 1 90 90 82 54.0 2e-16 MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARTG RNPATGATIQIPASVQPKFVAGKQFKDALNTK >gi|301349780|gb|ADCQ01000070.1| GENE 35 38381 - 39574 1134 397 aa, chain - ## HITS:1 COG:SMc02117 KEGG:ns NR:ns ## COG: SMc02117 COG0626 # Protein_GI_number: 15965232 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Sinorhizobium meliloti # 5 391 8 389 395 350 44.0 3e-96 MNKPKDEPGLQTILSHCGRNLEASGGYVNVPPYEGSTILHDDMEDLFGRVDNHLYGDGTA QTYGTDGGPTHEAFYDAMNKLEGGAGTWAFSTGLAGCTIPMMAFLKTGDHMLVTDSVYGP TRQFCEVLLKNFGVEAEFYEPTIGAGIEKLIRPNTRLIYMESPGTHTFEMQDVPAIAAVA RKYNIVTMIDNTYATPLNFQPLKHGVDVVVHSATKYICGHSDVLMSTVTCNEKNWKQVRD VCKMTGQYASAQSVYLGLRGLRTLKVRLDAVGVHTRKVVDWLLKREEVKKVIWPAYEKDP GYRIYKRDYSGPIGLFAFQFQDQYTDVQINRFMDSLKLFGLGYSWGGFESLILRSYGKRT VGDPKIMRTMIRVYIGLEDPEDMINDLDQAMTKMRDV >gi|301349780|gb|ADCQ01000070.1| GENE 36 39609 - 40370 445 253 aa, chain - ## HITS:1 COG:RSp1235 KEGG:ns NR:ns ## COG: RSp1235 COG0583 # Protein_GI_number: 17549456 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 1 242 49 289 310 154 35.0 1e-37 MKLLERTPRGVSPTAQGNAIMPMIDQLVRQAEILDYSVKQMQQNAQGILTIGANTESMLF FIPEFKKRLAALHPNISLFVKEIDSYQVETELTDGTVLIGMAFFDTLSDQRLRMANLINE KPIVLLNRNHHLAGKGGVSIKDLRNEDFVFTRRSIAPRLFDGLVGFCQEVGGFTPRIIHE VESSPRQMGFVSCGQGIAFLPESFRQWMPEYIRAETITDAAPCLPLSIAWNPLIESPLRD IVAEELKQMFVDR >gi|301349780|gb|ADCQ01000070.1| GENE 37 40629 - 41264 606 211 aa, chain + ## HITS:1 COG:ECs4754 KEGG:ns NR:ns ## COG: ECs4754 COG1280 # Protein_GI_number: 15834008 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 9 202 9 196 206 73 29.0 2e-13 MSASSLGLFFIVVFITCVTPGAGVLYTLKNAINYGKNNAFLSPTGNAIGVLFMSILAASG LGAVIHESSVMFYGLQLCGCLLLFWFGWKSWTAPVISLSSSIKSFNPKELKQERIHILTS AALLQVTNPMCIVFLLSLFPQFIDPKGSYVQQVSLMIAMFVITCWFVHIAYSYSAAAAAD RWMTKSFSFWLNKISAFLFWLISVSILVKMF >gi|301349780|gb|ADCQ01000070.1| GENE 38 41822 - 42232 531 136 aa, chain + ## HITS:1 COG:RSc1583 KEGG:ns NR:ns ## COG: RSc1583 COG0776 # Protein_GI_number: 17546302 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Ralstonia solanacearum # 30 121 3 94 104 87 51.0 7e-18 MEDLPKQAVKEQQKDETALVLGTLLKEGDTLTKSHLADVIYEQFGLPKRFCKEIVDLFFD EALECLVRGEELKLSNFGVFSIKQKSERPGRNPKSGESAIIKARQVVSFHPSGQLRKEVV EGRKHAAIALQASGAR >gi|301349780|gb|ADCQ01000070.1| GENE 39 42441 - 43343 217 300 aa, chain - ## HITS:1 COG:alr1337 KEGG:ns NR:ns ## COG: alr1337 COG1397 # Protein_GI_number: 17228832 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Nostoc sp. PCC 7120 # 7 296 9 308 313 169 36.0 5e-42 MGKFLRNALFGIAVGDALGVPHEKKPRGSFKCLGWDYTPEPDRKRTWSDDTALTLAELDS LGTLKRVDFDAIMQNFMEWFLMGKFSCTGRCFGAGKSTVHAIKNYCYGKKAIDCGSKDIM SNGNGALMRIMPFCLLREEYRKTFNFDDAVGMTHRHPINLVACCFFDVLVNAIVRGSDLK TAYETAEKSLSQEEKELIQMPSFGLLSERPESEIKSGRFVLDTLWAAIWCVEKTTNYRYA VLKAVDLGDDSDTTASVAGGIAGLIYGIGGEKGVPSNWIEQLACRNWLEDAAEKTAEMTC >gi|301349780|gb|ADCQ01000070.1| GENE 40 43512 - 44033 218 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858896|gb|EFL81984.1| ## NR: gi|302858896|gb|EFL81984.1| putative LexA repressor [Burkholderiales bacterium 1_1_47] # 1 173 1 173 173 314 100.0 1e-84 MTDSENKAPLKKKGGARPGAGRKPLIGAKTTTVILTEDLLIQLKRLGGSSWIRSQIAATT KPSPTKVADELFNSLPIPAEEISVEKAPDNSMDRAGIHEGTVLFLRKKAKAQVGNIVLLE YAGKKTLRRFTASERGFRLVPESSDSGLTDFILPRGAELAHSGIVVYVLSEPK >gi|301349780|gb|ADCQ01000070.1| GENE 41 44140 - 45288 1644 382 aa, chain - ## HITS:1 COG:BMEII0702 KEGG:ns NR:ns ## COG: BMEII0702 COG1744 # Protein_GI_number: 17989047 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein # Organism: Brucella melitensis # 44 381 28 362 363 336 50.0 4e-92 MKMSLKLVAAAAAVASAFALSACGDKKEAAPAKPATPAAPAAQSKAAEPLKVGFVYVAPI ADVGYTKQHDIGRIYAIDKVGKDKVTTTFVENVPETADAERVIRQMVADGNKLIFGTSFG YMNYMQKLAKEYPDVKFEHATGYKTAPNMTNYNIRFYEGRYLAGMLAGGATKSNIIGYVA PFPIPEVLQGINAFTLGAKSVNPNIQVKVIWTNAWYDPPKDTDSAKTLLGQGADILTQHT NTSAVASAAEAAGKMVIPYNSDMKSVAPNAQIAALVLNWGPYYAKKIQQMIDGKWDPTPV WMHYKDGAMSLEGVRTDKIPADIVKKMEEVKAKIESGEFHPFTGPIKTNDGKEAAKAGEV LKDDQLQTMNYYVDGVIGKVPN Prediction of potential genes in microbial genomes Time: Fri May 13 07:15:00 2011 Seq name: gi|301349779|gb|ADCQ01000071.1| Burkholderiales bacterium 1_1_47 cont1.71, whole genome shotgun sequence Length of sequence - 9151 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 6, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 142 141 ## 2 1 Op 2 26/0.000 - CDS 180 - 1097 996 ## COG1079 Uncharacterized ABC-type transport system, permease component 3 1 Op 3 24/0.000 - CDS 1094 - 2182 1093 ## COG4603 ABC-type uncharacterized transport system, permease component 4 1 Op 4 . - CDS 2182 - 3579 1485 ## COG3845 ABC-type uncharacterized transport systems, ATPase components - Prom 3698 - 3757 3.0 - Term 3752 - 3783 2.3 5 2 Tu 1 . - CDS 3802 - 5298 1522 ## COG0471 Di- and tricarboxylate transporters - Prom 5538 - 5597 4.5 + Prom 5305 - 5364 5.1 6 3 Tu 1 . + CDS 5394 - 5906 211 ## COG3760 Uncharacterized conserved protein 7 4 Tu 1 . - CDS 5861 - 7330 753 ## gi|302858903|gb|EFL81991.1| hypothetical protein HMPREF0189_01845 - Prom 7377 - 7436 4.4 + Prom 8408 - 8467 2.4 8 5 Tu 1 . + CDS 8540 - 8758 175 ## COG0582 Integrase + Term 8876 - 8911 -0.8 + Prom 8829 - 8888 2.5 9 6 Tu 1 . + CDS 8939 - 9149 249 ## COG3203 Outer membrane protein (porin) Predicted protein(s) >gi|301349779|gb|ADCQ01000071.1| GENE 1 1 - 142 141 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKMSLKLVAAAAAVASAFALSACGDKKEAAPAKPATPAAPAAQSKAA >gi|301349779|gb|ADCQ01000071.1| GENE 2 180 - 1097 996 305 aa, chain - ## HITS:1 COG:RSc2175 KEGG:ns NR:ns ## COG: RSc2175 COG1079 # Protein_GI_number: 17546894 # Func_class: R General function prediction only # Function: Uncharacterized ABC-type transport system, permease component # Organism: Ralstonia solanacearum # 1 304 1 303 306 298 61.0 9e-81 MSVAASLIATTMNASTPLLLAALGILVAERSGVLNLGVEGIMLMAAIAGYMATVETGSFA VGFIAAVAVGILFALFFAIFAVGLRANQQASGLGVAIFGGGLSAYIGIPYQGAVLPERAA DGIPFLDQIPFLGQAFFSQHWIVYLSLLMIPAVWYFLFRTRPGLVVRAVGESPFSANALG YSVPMIRCATLAFSGACIGLSGAYLSLIYTPLWVEGMIAGRGWIALALVTFGTWRPFRVF LGAYLFGGMTMLQMNLQSIGISVPTQFISMAPYAATIIVLALISRNPTWIRLNMPASLGK PFNPH >gi|301349779|gb|ADCQ01000071.1| GENE 3 1094 - 2182 1093 362 aa, chain - ## HITS:1 COG:RSc2174 KEGG:ns NR:ns ## COG: RSc2174 COG4603 # Protein_GI_number: 17546893 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Ralstonia solanacearum # 1 352 10 365 369 320 53.0 4e-87 MNFPLALYNRQRPSRFLSAASPFIAVLLTLLIGCLIFAGMGKDPMHSMYVFIVEPLLTLR GWGELGVKMTPLILCALGLLVCYRANVWNIGAEGQLIVGALAGGVVALQASPEASQLYMI WVILAAMVGGALYAGIVAWLKDKCNANEILVSLMLVYIAELFLSWAVQSPLRDPQGLGFP QSPMFEMAATLPIMIPGTRMHWGGALVCFALFGIWLIMSKMFIGFQVRVSGMAPKAAAYA GFSNRAIIYFVLLLSGALAGLAGVIEICGPIGQLTPKISPGYGFAAIIVAFVGRLKPLGT IPAAFIMALFYLGGELAQSRLGTPAALTGVFQGLLLFCIMACDSLIFCKLKWVGFNSAKG AA >gi|301349779|gb|ADCQ01000071.1| GENE 4 2182 - 3579 1485 465 aa, chain - ## HITS:1 COG:SMa1509 KEGG:ns NR:ns ## COG: SMa1509 COG3845 # Protein_GI_number: 16263274 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport systems, ATPase components # Organism: Sinorhizobium meliloti # 1 456 35 495 511 429 51.0 1e-120 MLGENGAGKSTLMKIIFGSVTPDEGEIYFDGRKVNISSPADARELGIAMVFQHFVLFETL TAKENILLGMPEGTDPKELEKEIIEKSRHYGIEVDPNAIVNDLSMGERQRVEILRALLTN PKLLILDEPTSVLSPLALQALFKTLRQLSSEGVSIIFITHKLNEIRELSKHCTVIRSGEV AANINPQEMTEQELAKLMIGSDLPEIMPRPEIKPHPGLEVCFQGEEVGFKSRYPLYGKIN VPCGRIVGVAGISGNGQAELMKAISGEVLLPKNCISIVGSFAGDLRVKHRRALGLRYVPE QRLGEATVPEMSLESNTLLTSNLFLAKGFMRNKMIARFTRSIIEKFHVRCGGPKAPAESL SGGNLQKFIVGRELLHNPKVMVLNQPTWGVDAGAATLIRNALIRQRSGGSAILVVSEELD ELFEICDELVVMSEGKISPQVKTKDVSVEEIGRWMSGLWPEAKEQ >gi|301349779|gb|ADCQ01000071.1| GENE 5 3802 - 5298 1522 498 aa, chain - ## HITS:1 COG:HP0214 KEGG:ns NR:ns ## COG: HP0214 COG0471 # Protein_GI_number: 15644842 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Helicobacter pylori 26695 # 13 493 23 543 552 298 40.0 2e-80 MAAAEIGSFPPGVKRFFLLGAPIIALIIYWILPNTYTDIHNQVLPFNPHAKACLAVVVWM VLWWLFEPVPIPVTSLLPIPLFPLLGIAKPAQAMAPYASGTIFLFMGGFILAIAVQRWRL DKRIALTTLKLVGTKAPAIVGGFLLASGVLSMWVSNTATAAMMVPIAMAVLSLVRAKKAG GPIDQEEENFSVAMLLAVAYGASIGGMATIIGSPPNGIFARFMEQNFNDPISLAHWMKYG MPLTLILLPLCWFLLTKVLFRKTMKEIEGGAQWVQSELNKLGPIGKGEMIVLIVFCSAIL LWSFGGVLRGLDFGGTRPFASLSDAAIAMICAIVLFCIPVNRDHMVLDWSDMKELPWGVL LLFGGGLSMAAGLQITECGQIISANAGILAGLPRWAILIGVSLLVMLASNFTSNTALAAT LMPLLASAAVPMGVPAEQLLMVTALSASCAFMMPVGTPPNAIVFSTGRIKIMQMVSAGAV LTLVSVVVIGLFAATFID >gi|301349779|gb|ADCQ01000071.1| GENE 6 5394 - 5906 211 170 aa, chain + ## HITS:1 COG:CC0111 KEGG:ns NR:ns ## COG: CC0111 COG3760 # Protein_GI_number: 16124366 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Caulobacter vibrioides # 11 155 10 154 168 74 30.0 1e-13 MDNTTQEVEDFLRTHNIPFKALNHLPITTCEEGLKIAKEFGSTCCKTLLVKNKKQFFLFV IPGEERFNAKQAAAFLKSSHLSFASPEDLSRLMHTFPGAVSLLGLIFDQNKEISLYIDSR ILNAEHIDCHPCTNDRSLILSVKDVLEKFLPSLGVSYFEFQSGSLNGESK >gi|301349779|gb|ADCQ01000071.1| GENE 7 5861 - 7330 753 489 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858903|gb|EFL81991.1| ## NR: gi|302858903|gb|EFL81991.1| hypothetical protein HMPREF0189_01845 [Burkholderiales bacterium 1_1_47] # 1 489 1 489 489 946 100.0 0 MRPVRLRNYILYLLALTITLPLLVLSYSQYRMIEQEIRKDDLLLVEDALALSNNIKNRVD SAKTLVVMSASTLQVYGTEDKSALRAILKSILTEVPYFLNIHYGDVNGDVIVFEPPKNAR NESNEGVSHTNRDHWSHIRNRDSVYISDVIMATGAANVPIVNICAPAINKSGKIIGYAVS ALDLKSLYEDVVSGLDIQDSAVYILDKKGAPIYATDHVNSPEPLIPSKVLKELVANKENA QVLSRNDASDLVGAIREIPGLGWYVGVFKKEEDRESAIISMAATNSLIFFFLLLVTFILA SYSVRPLTESVNKLIEQVREGNAVPTEAEKVHHPEELVELQKAFCRLLVKLKSHQKSEGA LSELSESDVQKEVELLKEQYEFLQALITLLPSPMAIVDENGFVRFLNQSASKFFNKAVAG ANFAQMLKEKFEEDNFGFNLHGMSEEKILKTKDTGEDFLLQRRELPPIKGTRRSVYLLSP FKEPDWNSK >gi|301349779|gb|ADCQ01000071.1| GENE 8 8540 - 8758 175 72 aa, chain + ## HITS:1 COG:ECs1299 KEGG:ns NR:ns ## COG: ECs1299 COG0582 # Protein_GI_number: 15830553 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 2 56 337 391 400 64 50.0 4e-11 MHGMRSTFRDWCAENDIDNEAAEKSLMHTTGTQTTLAYQRSDLLDRRRVVMQLWADALFD DEKAKIHKADLL >gi|301349779|gb|ADCQ01000071.1| GENE 9 8939 - 9149 249 70 aa, chain + ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 68 1 69 382 58 47.0 2e-09 MKKTLIAAAVMATSGIAFAASNVTLYGVIEEGVLLEKAKHADTTVQLRSGFDQGGRWGIK GVEDLGNGYS Prediction of potential genes in microbial genomes Time: Fri May 13 07:15:33 2011 Seq name: gi|301349778|gb|ADCQ01000072.1| Burkholderiales bacterium 1_1_47 cont1.72, whole genome shotgun sequence Length of sequence - 5094 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 3, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 28 - 87 2.3 1 1 Tu 1 . + CDS 197 - 1390 1231 ## COG3203 Outer membrane protein (porin) + Term 1417 - 1447 3.0 2 2 Op 1 . - CDS 1444 - 1959 187 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 3 2 Op 2 . - CDS 2036 - 2302 218 ## gi|302858908|gb|EFL81996.1| putative reticulocyte-binding protein 2 (PvRBP-2) - Prom 2323 - 2382 7.0 + Prom 2275 - 2334 4.2 4 3 Op 1 3/0.000 + CDS 2443 - 3540 1152 ## COG3203 Outer membrane protein (porin) + Term 3569 - 3597 1.0 + Prom 3573 - 3632 2.0 5 3 Op 2 . + CDS 3665 - 4819 1247 ## COG3203 Outer membrane protein (porin) + Term 4846 - 4876 3.0 Predicted protein(s) >gi|301349778|gb|ADCQ01000072.1| GENE 1 197 - 1390 1231 397 aa, chain + ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 230 1 218 382 84 35.0 3e-16 MKKTLIAAAVMATSGIAFAASNVTLYGVIEEGVLLEKAKHADTTVQLRSGFDQGGRWGIK GVEDLGNGYSVGFILEQGFTADDGNVANSGNGTTSGFTREAFMYVNGDFGKFGAGRTGTL ASGAQSNHILTGWALGTGLGLSSWTSAIGTSFSRTNNSVVYATPVFSGFSVHAMYSNGLS TDTSKWSDNSHYYGLGVKYQANAIKSSLIFEAVDNKGTETPATTYGDVISLNQWAVANDK VGPLTAADKAAYKEWAKTEISAAEKAKKAVYTINYGLEYNLGSWTPMFAYQFAHQNSGRR THMFGLSAKVAVGGGDVLVGGRYLFGKDDAKNVGANKVTVDGDVRAWNIGAAYIYPLSKR TALKAYAGYADSGKEWKEVENVAYNGYQVYLGMRHSF >gi|301349778|gb|ADCQ01000072.1| GENE 2 1444 - 1959 187 171 aa, chain - ## HITS:1 COG:XFa0025 KEGG:ns NR:ns ## COG: XFa0025 COG0454 # Protein_GI_number: 10956736 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Xylella fastidiosa 9a5c # 1 145 3 145 161 108 35.0 4e-24 MKFLKPVPLSIEHRELLDSFDCQSNAINDWLKRHAIKNQLAGVSRTYLVFEDNNLLAGYF SVRVGVIDHSVLSAAFKKNLPNPLPILLLGRLGVDVKYQGLGLAKAMVYKTISLGYEVAN VASCWGVVVEPLTENLTPFYLKLGFIKTKAARPLLIFRLQDKNGNPMIFPG >gi|301349778|gb|ADCQ01000072.1| GENE 3 2036 - 2302 218 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858908|gb|EFL81996.1| ## NR: gi|302858908|gb|EFL81996.1| putative reticulocyte-binding protein 2 (PvRBP-2) [Burkholderiales bacterium 1_1_47] # 1 88 1 88 88 133 100.0 4e-30 MTKMNTLTIRISDFDLKLLNLLAEEEQQTKTNIVLSAIRQRFEESLADKNIIRLSENDFN EVLKVFESEMSPEEIIGRKNLAKAKKWD >gi|301349778|gb|ADCQ01000072.1| GENE 4 2443 - 3540 1152 365 aa, chain + ## HITS:1 COG:RSc2855 KEGG:ns NR:ns ## COG: RSc2855 COG3203 # Protein_GI_number: 17547574 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 257 1 257 389 87 32.0 3e-17 MKKTLIAAAVMGASGIAFAASNVTLYGVIETGVVVQKAKHHDTNVAMVSGFDSGSRWGIR GVEDLGNGYNVGFVLEEGYDSDTGANTASNSAGKVFGRESQLFVQGGFGKLGLGRFGTLS SGAGSYQILTGWALGTGYGLSSWTSEIGTSFSRVDNAIAYVSPNFSGLTISAMYSNKTAG DDSVTKWSKNNHYYGLGAKYEANAIRTSLIFEAQQVKETPAAPAVDNKNTKYAINFGFEY NLGSITPMFAYQYAWQDEGKKTNMFGLSAKVPMAGGDLLAGARYLFGKDKTIPATEDQDV NSWNIGAAYVYPLSKRTKLKAFAGYADSGKGWKDVSYKAGKTVEDANITPVYNGYQLFFG MQHSF >gi|301349778|gb|ADCQ01000072.1| GENE 5 3665 - 4819 1247 384 aa, chain + ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 220 1 217 382 98 34.0 3e-20 MKKTLIAMGVLGAFSSLAFAASNVTLYGIIEEGVIVQKAKHGDNKVELNSGFGQGSRWGI KGVEDLGNGYSAGFVLEQGFNADNGNEATSGKAFNRESFLYVKGGFGSFGFGRTGALSFA QTQAILTGWAFGTSYGAGSWQSAIANNFSRMDNVLSYATPSFNGFTGHVMYSNGLTSDSE KWSDNNHYYGIGVKYQANAIRSSLIFEAADNKGSATAATLVSDVFTENQWKALDNGQAWA DVKDKVVGDATAKKKPIYVINYGFEYNLGSWTPMFAYQFAHQDHGRRTHMFGLSASAQVA GGKAMLGARYLFGKDEATKVGANKVKVDGDVRAWTIGAAYEYPLSKRTAVKAYAGYADSG KEWKEVEDVAYNGYQVYLGLRHAF Prediction of potential genes in microbial genomes Time: Fri May 13 07:15:44 2011 Seq name: gi|301349777|gb|ADCQ01000073.1| Burkholderiales bacterium 1_1_47 cont1.73, whole genome shotgun sequence Length of sequence - 2718 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 443 - 483 9.1 1 1 Op 1 3/0.000 - CDS 507 - 1556 891 ## COG3203 Outer membrane protein (porin) - Term 1569 - 1606 4.1 2 1 Op 2 . - CDS 1632 - 2663 1020 ## COG3203 Outer membrane protein (porin) Predicted protein(s) >gi|301349777|gb|ADCQ01000073.1| GENE 1 507 - 1556 891 349 aa, chain - ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 349 1 382 382 85 26.0 1e-16 MRTKILVAALLSSFASLSFAASNVTLYGQLDEGLVVGKAKHSSTTATLKSGFVGMSRWGI KGVEDLGNGYSVGFTLEQGFLADSGAEHTSGLAFSRESLMRITGPFGQVALGRMGALGFA QSTAILRGWAFGTSWGASAWSVGNVHFGRLNNAVNYVTPSFSGLTLHATYSNGTATDDNK WSDNAHYYGVGAKYTAHNIDASIIFEAKDNKGVALLEEKQKALYHITAGGTYNFNGVKPG VIYQYATQEDYYHQHAFGLSVTAPLAGGSAKLGAKYLLRKYDSHYVDLAALSEKKASVWT VGAGYEYPFSKRTNLWTYAGYADGAKGWKNEADVNYNGWQVGLGLLHKF >gi|301349777|gb|ADCQ01000073.1| GENE 2 1632 - 2663 1020 343 aa, chain - ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 315 1 342 382 92 29.0 1e-18 MKKTLIAAAVMAASGVAFAASNVTLYGVIEEGVVLEKAKHGDTLVKLQSGFDQGSRWGIK GVEDLGNGYAVGFILEQGFNADSGNESVAGKAFSRESFLYLTGDFGRFGFGRTGTLASGA QSNNILTGWALGTGYGLSSWTSAIGTSFSRVDNAVAYQTPSFGGFKISAMYSNGTTGDDA KWSKNNHYYGVGALYNANAIKSSLIFEAVDHKNTADPKEKTSYVINYGLEYNLGQWTPMF AYQWANQDEGKKTHMFGLSAKVAVGGGDALLGARYLFGKDKSLEAGDDKVRSWNVGAAYV YPLSKRTAVKAYAGYGDSSKAWKDTEQVVYNGYQVYFGLRHSF Prediction of potential genes in microbial genomes Time: Fri May 13 07:15:47 2011 Seq name: gi|301349776|gb|ADCQ01000074.1| Burkholderiales bacterium 1_1_47 cont1.74, whole genome shotgun sequence Length of sequence - 5086 bp Number of predicted genes - 6, with homology - 5 Number of transcription units - 6, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 237 324 ## COG3203 Outer membrane protein (porin) - Term 256 - 295 1.0 2 2 Tu 1 . - CDS 340 - 1317 396 ## PROTEIN SUPPORTED gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 - Prom 1418 - 1477 7.0 + Prom 1404 - 1463 7.5 3 3 Tu 1 . + CDS 1647 - 3110 1658 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 3133 - 3174 2.4 + Prom 3275 - 3334 7.4 4 4 Tu 1 . + CDS 3493 - 3633 169 ## gi|302858916|gb|EFL82004.1| hypothetical protein HMPREF0189_01858 + Term 3640 - 3669 1.5 - Term 3628 - 3656 2.1 5 5 Tu 1 . - CDS 3678 - 4358 358 ## COG2095 Multiple antibiotic transporter - Prom 4385 - 4444 3.7 - Term 4447 - 4498 4.4 6 6 Tu 1 . - CDS 4510 - 4641 112 ## - Prom 4684 - 4743 3.9 - 5S_RRNA 4893 - 4962 94.0 # AM902716 [D:760088..760203] # 5S ribosomal RNA # Bordetella petrii # Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella. Predicted protein(s) >gi|301349776|gb|ADCQ01000074.1| GENE 1 3 - 237 324 78 aa, chain - ## HITS:1 COG:RSp0051 KEGG:ns NR:ns ## COG: RSp0051 COG3203 # Protein_GI_number: 17548272 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Ralstonia solanacearum # 1 78 1 79 382 68 50.0 3e-12 MKKTLIAAAVMAASGVAFAASNVTLYGVIEEGVVLEKAKHGDTLVKLQSGFDQGSRWGIK GVEDLGNGYAVGFILEQG >gi|301349776|gb|ADCQ01000074.1| GENE 2 340 - 1317 396 325 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163794676|ref|ZP_02188646.1| 50S ribosomal protein L13 [alpha proteobacterium BAL199] # 18 317 10 309 312 157 30 2e-38 MEQTLFTQFLLQFGKSSPLFLLIFLGFALSRWFGFNKTASTVLSRFAFNIALPAMLFRLL SNLALTESHADLRLLIAFFGACFILFFIGRFVSGYLLKMKPVETAIFGTGCVFSNNGLLG LPLAIAMLGEKVAPSVSAVLSLNALVLWTLVSIAVEFSLQSGHLTIRSFLKTLASVFKNP LIIAIFCGVAWSFTGLSIPYVIDEPVRLIGNSATALSLIVVGMGLSEYGIGQGLGKSVVL SSIKLFIHPALIFSLALLIGLGPVETTAIVFLGCLPMGVNVYLMCRQFHAAEAVIANAMI ITTVVSSFTVPMAVAFLTRYFGGLG >gi|301349776|gb|ADCQ01000074.1| GENE 3 1647 - 3110 1658 487 aa, chain + ## HITS:1 COG:RSp1552 KEGG:ns NR:ns ## COG: RSp1552 COG0265 # Protein_GI_number: 17549771 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Ralstonia solanacearum # 45 477 59 489 490 364 49.0 1e-100 MLRISMKKTAAAAAVTFAFVAGSLVQTSPIAPITSAHAQQAQLPDFTKLVEDNGKAVVSI QVTQKAAVRKNANPFKGMPKDKLDEPRRFGFPFPFPGPDGFEDRMPERKGQGSGFIISPD GLILTNHHVVDGADEIKVHLTDDREFNAKVIGSDAKTDVAVIKIDGKDLPCVKLGNSKDV KVGEWVAAIGAPFGLENTVTSGIVSAKSRNLPSDQFVPFIQTDAAVNPGNSGGPLFNMKG EVIGINSQIFSTSGGFMGLSFAVPIDLALQIKDELVKHGKVNRGRLGVMIQTMSPELAKS FGLEKNKGALIAQIQKGSAAEKAGLQEGDIVILFDGKGIDNAADLSRAVASARPDTEHNV KVLREGKEAEVKVKLDAAADTSVAKGKAAEEARGRLGVTVRGLNDEEKKKYGDGLVVVES HGPASEAGIKEGDVLLSVGGKKIRSFEQFKDAVNAADKTLALQVARDGSRTFLAVKLDPK DKKEEKK >gi|301349776|gb|ADCQ01000074.1| GENE 4 3493 - 3633 169 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858916|gb|EFL82004.1| ## NR: gi|302858916|gb|EFL82004.1| hypothetical protein HMPREF0189_01858 [Burkholderiales bacterium 1_1_47] # 1 46 5 50 50 71 100.0 2e-11 MLDYLREEFAAYSNELIIIGVLIIAFVSFYSRFFLKSSKKKNTTNR >gi|301349776|gb|ADCQ01000074.1| GENE 5 3678 - 4358 358 226 aa, chain - ## HITS:1 COG:CC1662 KEGG:ns NR:ns ## COG: CC1662 COG2095 # Protein_GI_number: 16125908 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Caulobacter vibrioides # 3 216 9 218 228 122 35.0 6e-28 MLSSFLSTFLYVFTSLVTVVNPIGAAMFFLTITSGATRAQRMTLSNKVCIYFLIMALVTL CAGSFVLSFFGISLGVLRVAGGLILFSAGWLALNNTSSSSEGEEEVESTAGAHKPRTDQD WMKLAFYPFTMPLTLGPGAIAVTTAIGTSMNFTIPNVIGAFAAALANALIVWLCFRYADR ITEILGPSGSDAIGRIFSFILVCLGVQIFWTGFSELWLTLVSSVPK >gi|301349776|gb|ADCQ01000074.1| GENE 6 4510 - 4641 112 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFMGYYSYQGGRDMKKVLRKMIEICACRMVRNRLMAEAMKKSR Prediction of potential genes in microbial genomes Time: Fri May 13 07:16:05 2011 Seq name: gi|301349775|gb|ADCQ01000075.1| Burkholderiales bacterium 1_1_47 cont1.75, whole genome shotgun sequence Length of sequence - 3293 bp Number of predicted genes - 7, with homology - 5 Number of transcription units - 4, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 300 - 359 2.3 1 1 Op 1 . + CDS 431 - 790 366 ## gi|302858756|gb|EFL81845.1| hypothetical protein HMPREF0189_02346 2 1 Op 2 . + CDS 812 - 1171 187 ## gi|302858757|gb|EFL81846.1| hypothetical protein HMPREF0189_02347 + Term 1179 - 1211 3.0 3 2 Op 1 . + CDS 1262 - 1600 205 ## gi|302858758|gb|EFL81847.1| hypothetical protein HMPREF0189_02348 4 2 Op 2 . + CDS 1590 - 1898 173 ## gi|302858759|gb|EFL81848.1| reticulocyte-binding protein 2 (PvRBP-2) 5 2 Op 3 . + CDS 1895 - 2182 160 ## - Term 2058 - 2097 7.5 6 3 Tu 1 . - CDS 2118 - 2264 168 ## - Prom 2291 - 2350 4.4 + Prom 2230 - 2289 3.3 7 4 Tu 1 . + CDS 2326 - 2790 288 ## COG3772 Phage-related lysozyme (muraminidase) Predicted protein(s) >gi|301349775|gb|ADCQ01000075.1| GENE 1 431 - 790 366 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858756|gb|EFL81845.1| ## NR: gi|302858756|gb|EFL81845.1| hypothetical protein HMPREF0189_02346 [Burkholderiales bacterium 1_1_47] # 1 119 1 119 119 230 100.0 2e-59 MLLKALVQLFAEKFLVSKKEWVADQSAHIPSASTEITVTPDGERHTFTMPYTGLVVLQCY GVMFAGLNGFNMVNLGAGANGNICVSLYSKKGNIVSYEIGKSNNFGAANLYVYKTYGSQ >gi|301349775|gb|ADCQ01000075.1| GENE 2 812 - 1171 187 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858757|gb|EFL81846.1| ## NR: gi|302858757|gb|EFL81846.1| hypothetical protein HMPREF0189_02347 [Burkholderiales bacterium 1_1_47] # 11 119 11 119 119 204 100.0 2e-51 MLKALLQLLLNTRTTKTEAAHFAQPAWGASPIVMTGTDVNDDWGSIYQGVMPNDGVLVVS FTGTNESSYAAGPGAQSLVPWANGGGKFSMPVTKGSYVSLGGNHVKDVELRLYPLSASI >gi|301349775|gb|ADCQ01000075.1| GENE 3 1262 - 1600 205 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858758|gb|EFL81847.1| ## NR: gi|302858758|gb|EFL81847.1| hypothetical protein HMPREF0189_02348 [Burkholderiales bacterium 1_1_47] # 1 112 1 112 112 214 100.0 2e-54 METDFSLSEFASTVNLIVFTLILICAASGSAMPYVRAERDWNFPRWFIEFVTSCAAGFIV YLILRTSKLSWEWIGACSGVSSYFGLKIMNTLYGVVTGKLKLTVRNGANHGN >gi|301349775|gb|ADCQ01000075.1| GENE 4 1590 - 1898 173 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302858759|gb|EFL81848.1| ## NR: gi|302858759|gb|EFL81848.1| reticulocyte-binding protein 2 (PvRBP-2) [Burkholderiales bacterium 1_1_47] # 1 102 5 106 106 165 100.0 1e-39 MAISMRSVIAGLIKLILFFAFYMAGWLTNSQLNQYTIVSQQDRINSLENETALQRLQINE LNRRATSNTENLKQLERISSDIESLKKEVQQLHGLHNTKEPK >gi|301349775|gb|ADCQ01000075.1| GENE 5 1895 - 2182 160 95 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRIEIIKWVDTFGCPPGWEFEDELEYKVTEVTSVGFIRKETDTVVVLVPHISGADRKQVA GHICIPRKQILSRQTIFSSETCDPEPALKQNPPSS >gi|301349775|gb|ADCQ01000075.1| GENE 6 2118 - 2264 168 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAKNEKSSKELASLAGKVLQQKTSTKTAKSLAGSVLTQAPDRKSQKKK >gi|301349775|gb|ADCQ01000075.1| GENE 7 2326 - 2790 288 154 aa, chain + ## HITS:1 COG:STM1028 KEGG:ns NR:ns ## COG: STM1028 COG3772 # Protein_GI_number: 16764388 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Salmonella typhimurium LT2 # 11 152 6 149 150 101 43.0 6e-22 MTQDILLYPPELATQFISEFEQGPKGGPALESYKCPAGVWTIGFGHTKDVHAGEHITRNE AYDLLTKDLVQTQEELAAIVKVPVTENQFIALMSWLFNLGLTPAVRRSTLLRKLNAGDYE GAAEEFPKWRKSAGQVLPGLVNRRAEEKKIFLKE Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:05 2011 Seq name: gi|301349774|gb|ADCQ01000076.1| Burkholderiales bacterium 1_1_47 cont1.76, whole genome shotgun sequence Length of sequence - 2707 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 252 297 ## COG1430 Uncharacterized conserved protein + Term 275 - 318 6.0 + Prom 316 - 375 4.7 2 2 Tu 1 . + CDS 396 - 2333 1007 ## SZO_01320 transposase 3 3 Tu 1 . - CDS 2502 - 2705 65 ## Sputcn32_0810 flavocytochrome c Predicted protein(s) >gi|301349774|gb|ADCQ01000076.1| GENE 1 1 - 252 297 83 aa, chain + ## HITS:1 COG:RSc2494 KEGG:ns NR:ns ## COG: RSc2494 COG1430 # Protein_GI_number: 17547213 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 80 60 139 150 102 55.0 1e-22 MFRKHLPENSGMLFVMDRSDAVCMWMKNTLIPLSVAFIDKDGFIINIEEMKPLTLDIHCS KAKAFYALEMNESWFEKNHVTCV >gi|301349774|gb|ADCQ01000076.1| GENE 2 396 - 2333 1007 645 aa, chain + ## HITS:1 COG:no KEGG:SZO_01320 NR:ns ## KEGG: SZO_01320 # Name: not_defined # Def: transposase # Organism: S.equi_zooepidemicus # Pathway: not_defined # 12 565 11 525 573 183 27.0 2e-44 MYLVIRGDRLYEGYSIVYTTKSGKKSTKGCIGKALGSKSELLAKDPLALEKLRAELKKKS APNQATERTKQLLEEIPKKRPCLPYAGEPVLCYANYILKPIWNETLKLKALIRYQQSKTD IEFDAEALLWQTIVNRIVSPSSHLKHYRSQTNWLGNSLAETNLKSLYRMLSFAARIRKPI LRGLNKALNQAMPRDLSVVFYDVTNTWFETVWDDEHQWAMEVEKQLSALPSEAALEEKRQ LIEKLERNRTSSLRMRGPSKECRKDPIVSIAMVVDRDGIPIDFRVYPGNSSEKTTMKCSI DELAKTYKITNAVVVADNGLNTNANLSRLVKENQGFLLAHSLSKAKQSSVDEWLKDTGWE WDKEKERKIKIIPSSLVDEDGVVQTDYRMVIGWSEKRYREDMFKIEMHEQGAREAVAHHA KLPLAAFGWKKYIETGKNKAQKINEKKLAKDKKLAGYYAYLFKDSREFDKEWVELPPKEK KELSGWEIIEQYKKQAQIEQCFRIMKTNFNLRPMYVYTDEHIEAQVLICVLALILLRILS KKLKLAGHPMTTEQILAALNTAKLSVQLDKEQPALYRPLRQILRRPQDDDPHAPIHLYEE TDLSRIMNCVDLTPLPPVADKNELAHCLKTRFDTDKEALGAVYQI >gi|301349774|gb|ADCQ01000076.1| GENE 3 2502 - 2705 65 67 aa, chain - ## HITS:1 COG:no KEGG:Sputcn32_0810 NR:ns ## KEGG: Sputcn32_0810 # Name: not_defined # Def: flavocytochrome c # Organism: S.putrefaciens # Pathway: not_defined # 10 67 58 113 589 68 48.0 8e-11 PPKAVNTDGCLKCHVSYEKLAARTDKNDINPHDSHLENLDCGACHHGHKKPVLACDECHE FTNIKVP Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:21 2011 Seq name: gi|301349773|gb|ADCQ01000077.1| Burkholderiales bacterium 1_1_47 cont1.77, whole genome shotgun sequence Length of sequence - 1801 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 32 - 1681 325 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|301349773|gb|ADCQ01000077.1| GENE 1 32 - 1681 325 549 aa, chain - ## HITS:1 COG:FN0529 KEGG:ns NR:ns ## COG: FN0529 COG3666 # Protein_GI_number: 19703864 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Fusobacterium nucleatum # 52 492 53 475 493 162 30.0 1e-39 MTHFTISEPLLLYTFPLEAKEQEKLDAFLLLLEKSGAWKYLNEVRLDSELGRPQINKFRL FSAIVYCFALGKSSLREIEAACYYDLRVVYLIGEDRPSSSTISRFISLLENCITPIFISI VQAIVEEFAISLDTVFLDGSKFEANSNKYKFVWKPTTFHLRLSEKALNLLRLMHLSDDVP KDGIISSKLLTEKLTESQKIDPELIEGGETALKKMRSQLYEYLIKSVEYEEKEAICGPDR NSYYKTDHDATAMCLKEDYYSGLGSQMHAAYNTQIVVCRGIIVFYYLSQDRSDTRTLIPT LEGFKSMYGCYPKRICADAGYGSFANYKYCNTKGIEAFIKYPSWNGERTGRYPAVYEYLE DGTVSCLGGRTGNRVEIPNRHPKTQQSAFYKVENCTNCQFMAYCRRFMKEKEGNERIFEV MPEYVTLKQGARDRLLRPEGIEMRVNRSCQVEGTFGVLKQNMAYTRFRRRKLAKVRLEFA LTCLGLNIRKFLKFKKSGKLPTYWKVPEGLEAETFKKPSAKRIANRLKKRKNLQPNEIAK RGYRRKGMR Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:22 2011 Seq name: gi|301349772|gb|ADCQ01000078.1| Burkholderiales bacterium 1_1_47 cont1.78, whole genome shotgun sequence Length of sequence - 1748 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 493 - 1638 381 ## COG3344 Retron-type reverse transcriptase Predicted protein(s) >gi|301349772|gb|ADCQ01000078.1| GENE 1 493 - 1638 381 381 aa, chain + ## HITS:1 COG:BH0224 KEGG:ns NR:ns ## COG: BH0224 COG3344 # Protein_GI_number: 15612787 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Bacillus halodurans # 11 381 2 358 418 290 44.0 4e-78 MSSEAFKAITLDRILARRNLWEAMKKVQANKGSPGVDGMKTEELKEYFFENPGKLTAMIR QGEYRPLPIKRVYIPKDNGEQRPLGIPTVIDRFVQQAVALVLSEEYEKLFKDMSFGFRPN RSCRLAVRRAMEHVKDGYMWVVDLDLRKFFDTVNHSKLIQLLSDRIEDGRVVSLIHKFLR APICEEGEVGKPNTIGTPQGGVISPLLANILLHELDEKLESKGVRAVRYVDDAVLFAKSR KAAERLLEWVTDFTEQKLFLKVNAEKTKILRIGDPEVQFLGFSFTSQVSKKRRERYPTYR YFPVVHRKKMLKLKEKLKQITDRRAPGGIERVKRELKLTLRGWVNYFYKAIPAKWAERTD QWLHRRVRQIYWKQWKRPAKR Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:24 2011 Seq name: gi|301349771|gb|ADCQ01000079.1| Burkholderiales bacterium 1_1_47 cont1.79, whole genome shotgun sequence Length of sequence - 1725 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 69 - 121 4.9 1 1 Tu 1 . - CDS 205 - 483 109 ## BT_0358 transposase - Prom 678 - 737 1.6 2 2 Tu 1 . - CDS 1137 - 1682 196 ## gi|302858746|gb|EFL81839.1| conserved hypothetical protein Predicted protein(s) >gi|301349771|gb|ADCQ01000079.1| GENE 1 205 - 483 109 92 aa, chain - ## HITS:1 COG:no KEGG:BT_0358 NR:ns ## KEGG: BT_0358 # Name: not_defined # Def: transposase # Organism: B.thetaiotaomicron # Pathway: not_defined # 3 86 209 292 297 108 59.0 4e-23 MISMTENGDPKENAIAERVNGIIKNEILGKKMAGNFEEALKALNSAVVFYNTERPHMSCG MLTPFEAGQSSGNLGKKWRSYREEFLMGQQSL >gi|301349771|gb|ADCQ01000079.1| GENE 2 1137 - 1682 196 181 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858746|gb|EFL81839.1| ## NR: gi|302858746|gb|EFL81839.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 181 1 181 181 315 100.0 1e-84 MENKAKIDPKRFEIIRAYQKGEKIPGITAKFSHISKATIYRWINEFKKGRVCRKTRKPTE EKKAFYKTAMNLYRQGLSIPEIQREIKLVSSTTIRRWIMSSDTNSKDLSNGNKVLTSLQG EDSEKNDVLYDGMTPEELLTRYRQLLEQNRRQKVQLTLAETMIDVAEEEFGIAIRKKSGA K Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:41 2011 Seq name: gi|301349770|gb|ADCQ01000080.1| Burkholderiales bacterium 1_1_47 cont1.80, whole genome shotgun sequence Length of sequence - 1703 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 574 852 ## COG1027 Aspartate ammonia-lyase + Term 603 - 630 1.5 - Term 591 - 618 1.5 2 2 Op 1 . - CDS 670 - 1269 422 ## CAP2UW1_3061 putative lipoprotein transmembrane 3 2 Op 2 . - CDS 1266 - 1703 407 ## Tmz1t_2128 transcriptional regulator, MerR family Predicted protein(s) >gi|301349770|gb|ADCQ01000080.1| GENE 1 2 - 574 852 190 aa, chain + ## HITS:1 COG:HP0649 KEGG:ns NR:ns ## COG: HP0649 COG1027 # Protein_GI_number: 15645273 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori 26695 # 1 190 276 464 468 210 54.0 1e-54 SSAIKGLAVKMTKVCNDIRLLASGPRCGLKEINLPQLQPGSSIMPGKVNPVAAEVANQAS FLAIGLDTTVMLAASAGQLELNVMEPVITYALYTQMKVMTNACDTLRKKLVEGVTANTER CKDYVMNSIGIVTLLKPHFGYQKCAAIAKEGYTTGKSLHQIVVDEQHLMTQAEWDATFNT QNLIHPKFVK >gi|301349770|gb|ADCQ01000080.1| GENE 2 670 - 1269 422 199 aa, chain - ## HITS:1 COG:no KEGG:CAP2UW1_3061 NR:ns ## KEGG: CAP2UW1_3061 # Name: not_defined # Def: putative lipoprotein transmembrane # Organism: A.phosphatis # Pathway: not_defined # 24 190 20 186 190 113 34.0 5e-24 MKQNSSKLMEDIKKFLTGKKTDYVEIGGHRFAENIKVGQNALVLNGTGVRTQSDKPIYAV ALYLPAKTHRQDTSRALLGARRVQIVILQPLNAEDFISSMREAIAENNDETYQDFIENEL QQIEEFMKDLTNLEPGDVADVDWLPSRGTFVYYNGQLMGNPVRGKALYDAVLSIWLGDHA LEEGLREGLLSLPKEEKEN >gi|301349770|gb|ADCQ01000080.1| GENE 3 1266 - 1703 407 145 aa, chain - ## HITS:1 COG:no KEGG:Tmz1t_2128 NR:ns ## KEGG: Tmz1t_2128 # Name: not_defined # Def: transcriptional regulator, MerR family # Organism: Thauera # Pathway: not_defined # 16 141 13 142 159 64 35.0 1e-09 VFAQTVSSKNLLTIDELSQVSGLSKRTIRYYVNGGLLDRPSGETKNARYDASHLEQIRNI KALREKGYTLARIVELKRQTHQEVLNRREIGEPLTVIEIPVDPGISIEFRQEICGLTQPQ MIKLAQAFLEVIKSEKDKEAQEEKE Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:50 2011 Seq name: gi|301349769|gb|ADCQ01000081.1| Burkholderiales bacterium 1_1_47 cont1.81, whole genome shotgun sequence Length of sequence - 1633 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1511 959 ## COG5421 Transposase Predicted protein(s) >gi|301349769|gb|ADCQ01000081.1| GENE 1 3 - 1511 959 502 aa, chain + ## HITS:1 COG:MA3502 KEGG:ns NR:ns ## COG: MA3502 COG5421 # Protein_GI_number: 20092312 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 74 473 131 515 517 87 24.0 5e-17 ARNIKKLHAGATWALDQIVVDSPVGEFLKECFPRHKDYKKILSLAYFLILNQNNNVSFYE SFAETTRLPYPRALSPSAITRLFQRIELRDVQRYFSLIRSYLQEDEDNKIILALDSTSIS SYSTNLTHIEYGKNKDDDALPQLNVLFLVDQKSGLPIFYRFYDGNVPDVSTIRHTIADQA LLNMKNVVLVADKGYNSVKNINDCLINKVEFIFNVRLGTKGCLARELIDEHRKEFADLNS GDPYIRKNIATAKVNWKYDPRPVDGKPASNTASAELYYHMFYDPVIYQEAANKLTESLLT IKKKLLEEEALTEQEEELKEKFFRNDKEKGFIIVNRRVDEYLKYKGFRVLVTDSEKDPVK AWTAYADRWRVEDAFATLKDRLGCNRIRCSDNKALQGKTFVQFIATGLSLMVRSRIRSYM RENKKAGKLNLVYESDSKILQVLNNVMQTRFNHGYYFDEVAGKKIKYFEALGVGVPGAGP ETPEEVPEEPEIEPLLGTDIEI Prediction of potential genes in microbial genomes Time: Fri May 13 07:17:52 2011 Seq name: gi|301349768|gb|ADCQ01000082.1| Burkholderiales bacterium 1_1_47 cont1.82, whole genome shotgun sequence Length of sequence - 1552 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 163 - 726 -14 ## COG2801 Transposase and inactivated derivatives + Prom 544 - 603 5.8 2 2 Tu 1 . + CDS 835 - 990 57 ## + Term 1115 - 1164 -0.7 - Term 1046 - 1084 1.1 3 3 Tu 1 . - CDS 1110 - 1364 88 ## gi|302858737|gb|EFL81833.1| conserved hypothetical protein - Prom 1424 - 1483 2.2 Predicted protein(s) >gi|301349768|gb|ADCQ01000082.1| GENE 1 163 - 726 -14 187 aa, chain - ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 159 63 209 227 108 41.0 6e-24 MWVSDITYIPIKVSDWESGFAYLSLITDAYSHEVMGWRLGRDLSNRPALQALSMAFRIAN ERGVDICNGGLVHHSDRGVQYASKEYVEKLRSARIGISMTECGDPKENAIAERINSTLKN EILDKRRFESFEDLERALAEAIAFYNNCRPHLSNNLLTPAEASTVSGEIKKLWRSLREDH LRNKLIA >gi|301349768|gb|ADCQ01000082.1| GENE 2 835 - 990 57 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIVGKDICKPVPPDMKLFRKLAAEHEPEFLSSNIRILLTNIFAILNDDLLD >gi|301349768|gb|ADCQ01000082.1| GENE 3 1110 - 1364 88 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302858737|gb|EFL81833.1| ## NR: gi|302858737|gb|EFL81833.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] # 1 84 50 133 133 134 98.0 1e-30 MPKHKNVKQKAEPKTEDSSAGGDSKKSVNTDNINSETALLEAQIKELKAQLRAAELKACA YETMVNVAEKKFGIAIRKKHGAKQ Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:09 2011 Seq name: gi|301349767|gb|ADCQ01000083.1| Burkholderiales bacterium 1_1_47 cont1.83, whole genome shotgun sequence Length of sequence - 1445 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 95 - 1156 661 ## COG5421 Transposase + Term 1216 - 1256 2.2 Predicted protein(s) >gi|301349767|gb|ADCQ01000083.1| GENE 1 95 - 1156 661 353 aa, chain + ## HITS:1 COG:MA2942 KEGG:ns NR:ns ## COG: MA2942 COG5421 # Protein_GI_number: 20091761 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 1 285 205 476 521 62 20.0 2e-09 MLVESKSGLPIFYRTYDGNVPDVQTVRRVIADNSRLGIQNVVLVSDRGYSGTKNINDCLR NKVGFLLNMKCGISGSLTQELIDEERLNLQDLNRRDWYTQVFQVTKKINWIYEPSPVKNQ KSTKKTQESEELYWHIYFDRQIAENARQGLFERIDRVREKLANGKALDENEQTLLEEVFE KHEQDDAVSYSIDNKKVDQKLRYKGYRVLVSDEISDAGKAWCAYQERWIVEDTFKTLKSR LGCSRNRVSDNESLTGKTFVQFLATSIAMIVRTRLRKYSEECKKNTALPMVYDGDCRVLD SLNNVMQTKFCGGYYFGEIAGKRRKLFEALGVPVPDAEPEKEQDYDDEEETEF Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:09 2011 Seq name: gi|301349766|gb|ADCQ01000084.1| Burkholderiales bacterium 1_1_47 cont1.84, whole genome shotgun sequence Length of sequence - 1336 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 47 - 817 191 ## PROTEIN SUPPORTED gi|163764777|ref|ZP_02171831.1| ribosomal protein L22 Predicted protein(s) >gi|301349766|gb|ADCQ01000084.1| GENE 1 47 - 817 191 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764777|ref|ZP_02171831.1| ribosomal protein L22 [Bacillus selenitireducens MLS10] # 15 232 7 216 225 78 29 3e-15 MGAIKNVTVSRRGEKWDVSIQTEYEVSSPVSNPSEIGIDMGVKRFVTMSNGDVVEPLNPF KQEQEKLAKLQRKLARQKKGSRNSRKTKRKIARLHRYIADSRRDFLHKTSTKIAKNHSIV YVEDLKVSNMSASAGGTKESPGKNVRQKSGLNRSILDQGWYSFSQMLSYKLERGGGKLIK VDPRNTSRTCPRCGFVSAENRKSQATFACIGCGYRSNADEVGAINILRAGQARLACAMSG AVRPLSAGTRRDLLQH Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:11 2011 Seq name: gi|301349765|gb|ADCQ01000085.1| Burkholderiales bacterium 1_1_47 cont1.85, whole genome shotgun sequence Length of sequence - 1306 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1193 485 ## COG1403 Restriction endonuclease Predicted protein(s) >gi|301349765|gb|ADCQ01000085.1| GENE 1 2 - 1193 485 397 aa, chain - ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 397 16 427 427 132 31.0 1e-30 MPCSPAKARLLLKEKKAIVVRRTPFTIQLTIATGETKQPVSLGVDAGYKHVGLSASTENA ELYASEVELRQDVSDLLSARRALRQSRRNRNTRYRAPRFDNRIRTKRKGWLAPSVENRIN AHLSRIETVIRLLPVTKITVETTSFDMQLLKNSDIAGKKYQEGEQLGFWNVREYVLFRDG HVCQHCHGRSKDPVLNVHHLESRRTGGDSPGNLITLCETCHKALHRGEITLKAKRGQSFR AETFMGIMRWEVLDRLKASHPKLEVQNTYGYRTKHARISNGIAKSHCADAFCIAGNLGAE RLGEFFFLKQTRRNNRQIHKLSILKGGIRKRNQAPYEIKGFRLFDKVACQGEEGFIFGRR SSGYFDVRKLNGTHISAGISCKKLRLLEKRQTYLTEI Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:12 2011 Seq name: gi|301349764|gb|ADCQ01000086.1| Burkholderiales bacterium 1_1_47 cont1.86, whole genome shotgun sequence Length of sequence - 1233 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 70 - 534 153 ## SYN_01317 transposase and inactivated derivatives 2 1 Op 2 . + CDS 423 - 1205 128 ## COG3335 Transposase and inactivated derivatives Predicted protein(s) >gi|301349764|gb|ADCQ01000086.1| GENE 1 70 - 534 153 154 aa, chain + ## HITS:1 COG:no KEGG:SYN_01317 NR:ns ## KEGG: SYN_01317 # Name: not_defined # Def: transposase and inactivated derivatives # Organism: S.aciditrophicus # Pathway: not_defined # 1 153 7 158 174 151 53.0 7e-36 MSPQFRVTLTKEEVEELQKISSTGSRSAKIVLFARALLLLDKGPHTTEHWTVNQTSKAVG LSERTLNHLKEKFVSQGLDAIIRPRPTGKSKRPVIFDGAFEAKLTQLACSEPPEGRTRWT VRLLADKLVELEIVEKISPMTVQRVLKKTNLSLI >gi|301349764|gb|ADCQ01000086.1| GENE 2 423 - 1205 128 260 aa, chain + ## HITS:1 COG:RSc0110 KEGG:ns NR:ns ## COG: RSc0110 COG3335 # Protein_GI_number: 17544829 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Ralstonia solanacearum # 28 256 134 354 363 80 27.0 3e-15 MDGEASGRQTRRIGDRGKDFADDGTKGFKKNEFKPHLSEYWKIPPHHDAEFVTCMEDVLD VYQRPYDPSYPVVCMDESPKQLIGEVRGPLPTRPGSIEKVDDEYVRLGVAELFLAVEPLT GKMIAEVENKRAKKDWAQFIRDLVDIHYPTARKVVLVMDNLNTHKLASLYEAFDPEEAHR LRDKLELHYTPKHGSWLNVAEIGFSILKRQCIPFRVADINVLRNTVKSFITQRNAEKRVV NWQFTTGDARIKLRHLYPEL Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:16 2011 Seq name: gi|301349763|gb|ADCQ01000087.1| Burkholderiales bacterium 1_1_47 cont1.87, whole genome shotgun sequence Length of sequence - 1225 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 22 - 76 -0.4 1 1 Tu 1 . - CDS 78 - 1223 594 ## COG5421 Transposase Predicted protein(s) >gi|301349763|gb|ADCQ01000087.1| GENE 1 78 - 1223 594 381 aa, chain - ## HITS:1 COG:MA3502 KEGG:ns NR:ns ## COG: MA3502 COG5421 # Protein_GI_number: 20092312 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 1 313 173 472 517 87 24.0 6e-17 ISSYANKLPNVERGRNKDEDNLPQINLLMLVESKSGLPIFYRTYDGNVPDVQTVRRVIAD NSRLGIQNVVLVSDRGYSGTRNINDCLRNKVGFLFNMKCGVSGSLTQELIDEERLNLQDL NRRDWYTQVFQVTKKINWIYEPSPVKNQRSTRKTQETAELYWHIYFDRQIAENARQGLFE RIDRVQEKIANGKALDENEQTLLEEVFEKHEQDNAVSYTVDNKKVDQKLRYKGYRVLVSD EISDAGKAWCAYQERWIVEDTFKTLKSRLGCSRNRVSDNESLTGKTFVQFLATSIAMIVR TRLRKYSEECKKNSTLPMVYDGDCRVLDSLNNVMQARFCGGYYFGEIAGKRRKLFEALGV PVPDAEPEKEQDYEDEEETEF Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:18 2011 Seq name: gi|301349762|gb|ADCQ01000088.1| Burkholderiales bacterium 1_1_47 cont1.88, whole genome shotgun sequence Length of sequence - 1185 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1184 1629 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 Predicted protein(s) >gi|301349762|gb|ADCQ01000088.1| GENE 1 3 - 1184 1629 394 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 394 2 406 407 632 77 0.0 AKEKYERTKPHVNVGTIGHVDHGKTTLTAAITTVLSKKFGGEAKAYDQIDAAPEEKARGI TINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMPQTREHIL LARQVGVPYIIVYLNKCDLVNDEELLELVEMEVRELLSNYDFPGDDIPIIKGSARMALDG DKGPMGEESILKLADTLDSYIPTPERAIDQPFLMPVEDVFSISGRGTVVTGRVERGIVKV GDELEIVGIRPTQKTTCTGVEMFRKLLDQGQAGDNIGVLLRGTKREDVERGQVLAKPGTI TPHTEFQAEVYVLTKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIRM DVKLIAPIAMEEGLRFAIREGGHTVGAGVVSKIV Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:19 2011 Seq name: gi|301349761|gb|ADCQ01000089.1| Burkholderiales bacterium 1_1_47 cont1.89, whole genome shotgun sequence Length of sequence - 1018 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 921 428 ## COG5421 Transposase - Prom 946 - 1005 8.9 Predicted protein(s) >gi|301349761|gb|ADCQ01000089.1| GENE 1 3 - 921 428 306 aa, chain - ## HITS:1 COG:MA3502 KEGG:ns NR:ns ## COG: MA3502 COG5421 # Protein_GI_number: 20092312 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Methanosarcina acetivorans str.C2A # 166 305 130 261 517 77 34.0 2e-14 MKTPQLPPLIIKKSPSAFYVYTYKNKWDPEKKRSYRASFKKVGTVTSGEKEGRIRWDDHF LAERPELRDFICERKGKDYVFTPMNEGGFTLSQAMEVKQLHAGATWALDQLVVQSPIGEA LKTAFPQRRDYLKVLSIAYFIILNQDNNISKYPTFAEATRLPWGAPLHPSSIGRIFRKIK KQQIEKYFSALQEGLIEQKREVGDDDKLTLALDSTSISSYANKLPNVERGRNKDEDNLPQ INLLMLVESKSGLPIFYRTYDGNVPDVQTVRRVIADNSRLGIQNVVLVSDRGYSGTKNIN DCLRNK Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:20 2011 Seq name: gi|301349760|gb|ADCQ01000090.1| Burkholderiales bacterium 1_1_47 cont1.90, whole genome shotgun sequence Length of sequence - 1005 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 120 - 179 1.8 1 1 Tu 1 . + CDS 255 - 1005 299 ## COG1403 Restriction endonuclease Predicted protein(s) >gi|301349760|gb|ADCQ01000090.1| GENE 1 255 - 1005 299 250 aa, chain + ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 249 16 262 427 121 38.0 1e-27 MPCSPAKARLLLKEKKAIVVRRTPFTIQLTIATGEAKQPVSLGVDAGYKHVGLSASTEKA ELYASEVELRQDVSDLLSARRALRQSRRSRNTRYRAPRFDNRIRTKRKGWLAPTVENRIN VHLSRIETVLRLLPVTKITVETASFDTQLLKNPDIAGKEYQEGEQLGFWNVREYVLFRDG HVCQHCHGRSKDPVLNVHHLESRRTGGDSPGNLITLCETCHKALHRGEIKLKAKRGRSFR AETFMGIMRW Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:21 2011 Seq name: gi|301349759|gb|ADCQ01000091.1| Burkholderiales bacterium 1_1_47 cont1.91, whole genome shotgun sequence Length of sequence - 900 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 230 - 899 254 ## COG1403 Restriction endonuclease Predicted protein(s) >gi|301349759|gb|ADCQ01000091.1| GENE 1 230 - 899 254 223 aa, chain + ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 2 222 3 222 427 117 40.0 1e-26 MRVFVLNKRGKPLMPCSPAKARLLLKEKKAIVKRRTPFTIQLTIATGETKQPGSLGVDAG YEHVGLSASTEKAELYASEVELRQDITDLLSARRALRQSRRNRKTRYRAPRFNNRLCTKR KGWLAPSVENRINAHLSRIEAVLRLLPVTKITVETASFDLQLLKNPDISGKEYQEGEQLG FWNIREYVLCRDGHVCQHCYGRSKDPVLNVHHLESRRTGGDSP Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:22 2011 Seq name: gi|301349758|gb|ADCQ01000092.1| Burkholderiales bacterium 1_1_47 cont1.92, whole genome shotgun sequence Length of sequence - 862 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 861 379 ## COG1403 Restriction endonuclease Predicted protein(s) >gi|301349758|gb|ADCQ01000092.1| GENE 1 3 - 861 379 286 aa, chain + ## HITS:1 COG:all7277 KEGG:ns NR:ns ## COG: all7277 COG1403 # Protein_GI_number: 17233293 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Nostoc sp. PCC 7120 # 23 222 115 320 427 101 33.0 2e-21 DLLSARRALRQSRRNRKTRYRAPRFNNRIRTKRKGWLAPSVENRINAHLSRIEAVLRLLP VTKITVETASFDMQLLKNPDIAGKEYQEGEQLGFWNVREYVLFRDGHVCQHCHGRSKDPV LNVHHLESRRTGGDSPGNLITLCETCHKALHRGEIKLRAKRGQSFRAETFMGIMRWGVLN RLKASHPKLEVHNTYGYRTKHARIANGIAKSHCADAFCIAGNFGAKRLGEFFFQKQTRRN NRQIHKLSILKGGIRKRNQAPFEVKGFRLFDKVACQGEEGFIFGRR Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:23 2011 Seq name: gi|301349757|gb|ADCQ01000093.1| Burkholderiales bacterium 1_1_47 cont1.93, whole genome shotgun sequence Length of sequence - 720 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 572 345 ## Amet_0623 transposase, IS4 - Prom 592 - 651 9.3 Predicted protein(s) >gi|301349757|gb|ADCQ01000093.1| GENE 1 2 - 572 345 190 aa, chain - ## HITS:1 COG:no KEGG:Amet_0623 NR:ns ## KEGG: Amet_0623 # Name: not_defined # Def: transposase, IS4 # Organism: A.metalliredigens # Pathway: not_defined # 11 188 7 164 535 66 29.0 5e-10 MPNPKLPPILINKAGSVYYVYTYKNIWDRELKRSKRGESKKIGTILGGQKEGKIRFDEAF LQEHPEFRNYQVERKGKDYVFTPISEEGITLEQARNIKKLHAGATWALDQIVVDSPVGEF LKECFPRHKDYKKILSLAYFLILNQNNNVSFYESFAETTRLPYPRALSPSAITRLFQRIE LRDVQRYFSL Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:28 2011 Seq name: gi|301349756|gb|ADCQ01000094.1| Burkholderiales bacterium 1_1_47 cont1.94, whole genome shotgun sequence Length of sequence - 712 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 710 1009 ## COG1027 Aspartate ammonia-lyase Predicted protein(s) >gi|301349756|gb|ADCQ01000094.1| GENE 1 2 - 710 1009 236 aa, chain + ## HITS:1 COG:HP0649 KEGG:ns NR:ns ## COG: HP0649 COG1027 # Protein_GI_number: 15645273 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Helicobacter pylori 26695 # 1 235 21 253 468 226 49.0 2e-59 VQSLRGKENFFITEEKNNQEIYFIIAFAYVKKAAAMANKELGVVKPEVADAMIWACDQLI NNTEKYRDQFITDWLQGGAGTSTNMNANEVISNLAIEHLGGKLGDYSIVNPNNDANFGQS TNDTYPTAIHLSCILRSNVLIKAAEELRDALYAKAKEFDQTLKMGRTHLQDAVPMTLGQE FHGWGFTINDEIENLRAAQEHLKIVNLGATAIGTTVTAAPGYPELAVKNLAELTGI Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:29 2011 Seq name: gi|301349755|gb|ADCQ01000095.1| Burkholderiales bacterium 1_1_47 cont1.95, whole genome shotgun sequence Length of sequence - 592 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 543 823 ## COG1027 Aspartate ammonia-lyase Predicted protein(s) >gi|301349755|gb|ADCQ01000095.1| GENE 1 3 - 543 823 180 aa, chain - ## HITS:1 COG:VC2698 KEGG:ns NR:ns ## COG: VC2698 COG1027 # Protein_GI_number: 15642693 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Vibrio cholerae # 1 180 197 376 483 232 64.0 2e-61 MGRTHLQDAVPMTLGQEFHGWGFTINDEIENLRAAQEHLKIVNLGATAIGTTVTAAPGYP ELAVKNLAELTGIDFKNSEDLIAATSDCGAYMTLSSAIKGLAVKMTKVCNDIRLLASGPR CGLKEINLPQLQPGSSIMPGKVNPVAAEVANQASFLAIGLDTTVMLAASAGQLELNVMEP Prediction of potential genes in microbial genomes Time: Fri May 13 07:18:29 2011 Seq name: gi|301349754|gb|ADCQ01000096.1| Burkholderiales bacterium 1_1_47 cont1.96, whole genome shotgun sequence Length of sequence - 503 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 61 - 393 269 ## Glov_0887 hypothetical protein - Prom 443 - 502 3.6 Predicted protein(s) >gi|301349754|gb|ADCQ01000096.1| GENE 1 61 - 393 269 110 aa, chain - ## HITS:1 COG:no KEGG:Glov_0887 NR:ns ## KEGG: Glov_0887 # Name: not_defined # Def: hypothetical protein # Organism: G.lovleyi # Pathway: not_defined # 5 102 20 119 136 80 44.0 3e-14 MKKLLLVVSLALVSVQGAWAADKMLADRHVERGLKCESCHTTMPPKAVNTDGCLKCHVSY EKLAARTDKNDINPHDSHLENLDCGACHHGHKKPVLACDECHEFTNIKVP