Prediction of potential genes in microbial genomes Time: Thu Jun 30 07:32:05 2011 Seq name: gi|283548478|gb|GG730299.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld0, whole genome shotgun sequence Length of sequence - 2724488 bp Number of predicted genes - 2509, with homology - 2477 Number of transcription units - 1356, operones - 534 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 773 - 832 7.8 1 1 Tu 1 . + CDS 908 - 2206 1192 ## COG0477 Permeases of the major facilitator superfamily 2 2 Op 1 3/0.500 - CDS 2203 - 2538 339 ## COG5544 Predicted periplasmic lipoprotein 3 2 Op 2 3/0.500 - CDS 2571 - 3926 1315 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 3974 - 4009 -0.8 4 3 Op 1 3/0.500 - CDS 4041 - 6701 2137 ## COG1042 Acyl-CoA synthetase (NDP forming) 5 3 Op 2 3/0.500 - CDS 6738 - 7436 476 ## COG3148 Uncharacterized conserved protein - Term 7468 - 7500 5.4 6 3 Op 3 . - CDS 7507 - 7926 493 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 7986 - 8045 5.9 + Prom 7935 - 7994 4.1 7 4 Tu 1 . + CDS 8134 - 9213 1084 ## COG0566 rRNA methylases + Term 9223 - 9253 4.3 - Term 9211 - 9241 4.3 8 5 Tu 1 . - CDS 9247 - 9936 582 ## COG0692 Uracil DNA glycosylase - Prom 10118 - 10177 4.9 + Prom 10126 - 10185 6.2 9 6 Tu 1 . + CDS 10254 - 10637 469 ## COG3445 Acid-induced glycyl radical enzyme + Term 10677 - 10716 8.2 - Term 10664 - 10702 4.2 10 7 Tu 1 . - CDS 10716 - 11303 428 ## COG1280 Putative threonine efflux protein - Prom 11340 - 11399 2.9 + Prom 11303 - 11362 2.7 11 8 Tu 1 . + CDS 11406 - 12302 534 ## COG0583 Transcriptional regulator + Term 12386 - 12425 3.1 - Term 12277 - 12316 7.4 12 9 Tu 1 . - CDS 12320 - 13648 1292 ## COG0513 Superfamily II DNA and RNA helicases - Prom 13669 - 13728 2.8 + Prom 13683 - 13742 5.2 13 10 Tu 1 . + CDS 13779 - 14516 619 ## COG4123 Predicted O-methyltransferase 14 11 Tu 1 . - CDS 14501 - 16123 1364 ## COG0029 Aspartate oxidase + Prom 16335 - 16394 4.2 15 12 Op 1 11/0.025 + CDS 16548 - 17123 293 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 16 12 Op 2 10/0.031 + CDS 17155 - 17805 487 ## COG3073 Negative regulator of sigma E activity 17 12 Op 3 8/0.048 + CDS 17805 - 18761 673 ## COG3026 Negative regulator of sigma E activity 18 12 Op 4 4/0.402 + CDS 18758 - 19222 420 ## COG3086 Positive regulator of sigma E activity + Prom 19361 - 19420 4.9 19 13 Op 1 14/0.011 + CDS 19503 - 21302 2311 ## COG0481 Membrane GTPase LepA 20 13 Op 2 13/0.013 + CDS 21318 - 22292 967 ## COG0681 Signal peptidase I + Term 22306 - 22350 12.3 + Prom 22344 - 22403 1.7 21 14 Op 1 18/0.000 + CDS 22560 - 23240 626 ## COG0571 dsRNA-specific ribonuclease 22 14 Op 2 16/0.000 + CDS 23237 - 24142 1063 ## COG1159 GTPase 23 14 Op 3 9/0.036 + CDS 24343 - 25053 575 ## COG1381 Recombinational DNA repair protein (RecF pathway) 24 14 Op 4 8/0.048 + CDS 25069 - 25800 929 ## COG0854 Pyridoxal phosphate biosynthesis protein 25 14 Op 5 . + CDS 25800 - 26180 402 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) + Term 26184 - 26220 -0.6 26 15 Op 1 1/0.738 - CDS 26177 - 26437 211 ## COG1145 Ferredoxin 27 15 Op 2 . - CDS 26493 - 27341 987 ## COG1737 Transcriptional regulators - Prom 27394 - 27453 6.1 + Prom 27379 - 27438 2.0 28 16 Op 1 9/0.036 + CDS 27459 - 28352 1108 ## COG2103 Predicted sugar phosphate isomerase 29 16 Op 2 1/0.738 + CDS 28362 - 29726 1480 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 30 16 Op 3 2/0.602 + CDS 29730 - 30365 458 ## COG0560 Phosphoserine phosphatase 31 16 Op 4 . + CDS 30423 - 30920 501 ## COG0590 Cytosine/adenosine deaminases + Term 30928 - 30972 1.6 - Term 30910 - 30957 4.0 32 17 Tu 1 . - CDS 30961 - 32511 1708 ## COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein - Prom 32659 - 32718 3.4 + Prom 32663 - 32722 5.0 33 18 Tu 1 . + CDS 32772 - 36656 4698 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain + Term 36676 - 36708 3.0 - Term 36859 - 36888 2.1 34 19 Tu 1 . - CDS 37124 - 37312 109 ## - Prom 37363 - 37422 1.7 + Prom 37260 - 37319 3.0 35 20 Op 1 . + CDS 37389 - 38774 1319 ## COG0642 Signal transduction histidine kinase 36 20 Op 2 . + CDS 38797 - 39540 418 ## ROD_24981 putative lipoprotein 37 20 Op 3 4/0.402 + CDS 39537 - 40874 1278 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 38 20 Op 4 . + CDS 40943 - 41281 523 ## COG0347 Nitrogen regulatory protein PII + Term 41403 - 41440 3.5 - Term 41254 - 41290 7.0 39 21 Tu 1 . - CDS 41383 - 42573 1310 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Prom 42611 - 42670 6.3 + Prom 42735 - 42794 4.9 40 22 Tu 1 . + CDS 42900 - 44153 1720 ## COG0112 Glycine/serine hydroxymethyltransferase + Term 44276 - 44314 3.0 41 23 Op 1 6/0.128 - CDS 44246 - 45448 1063 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 42 23 Op 2 3/0.500 - CDS 45458 - 46270 979 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 43 23 Op 3 4/0.402 - CDS 46267 - 46587 305 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 44 23 Op 4 6/0.128 - CDS 46587 - 47105 597 ## COG5517 Small subunit of phenylpropionate dioxygenase 45 23 Op 5 . - CDS 47093 - 48463 1613 ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - Prom 48541 - 48600 4.0 + Prom 48436 - 48495 5.7 46 24 Tu 1 . + CDS 48599 - 49474 962 ## COG0583 Transcriptional regulator - Term 49405 - 49436 2.3 47 25 Op 1 . - CDS 49449 - 52595 1697 ## COG3250 Beta-galactosidase/beta-glucuronidase 48 25 Op 2 . - CDS 52668 - 52862 141 ## gi|283832067|ref|ZP_06351808.1| YbfN 49 25 Op 3 . - CDS 52877 - 55795 3062 ## Pjdr2_0194 coagulation factor 5/8 type domain protein 50 25 Op 4 . - CDS 55819 - 57237 1640 ## YE2976 hypothetical protein 51 25 Op 5 . - CDS 57317 - 59512 1862 ## COG3345 Alpha-galactosidase 52 25 Op 6 . - CDS 59509 - 60897 877 ## COG2211 Na+/melibiose symporter and related transporters 53 26 Tu 1 . - CDS 61066 - 62262 972 ## COG1940 Transcriptional regulator/sugar kinase + Prom 62279 - 62338 3.7 54 27 Op 1 . + CDS 62378 - 65644 3084 ## CKO_00239 hypothetical protein + Term 65653 - 65688 5.5 55 27 Op 2 2/0.602 + CDS 65693 - 66517 595 ## COG2017 Galactose mutarotase and related enzymes 56 28 Tu 1 . + CDS 66607 - 67755 1457 ## COG0477 Permeases of the major facilitator superfamily + Term 67841 - 67901 -0.8 57 29 Tu 1 . - CDS 67750 - 69027 1050 ## COG3711 Transcriptional antiterminator - Prom 69187 - 69246 5.2 - Term 69393 - 69432 6.6 58 30 Op 1 1/0.738 - CDS 69448 - 70047 611 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 59 30 Op 2 1/0.738 - CDS 70044 - 71681 2027 ## COG1069 Ribulose kinase 60 30 Op 3 11/0.025 - CDS 71698 - 72651 1341 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 61 30 Op 4 21/0.000 - CDS 72653 - 73642 1348 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 62 30 Op 5 16/0.000 - CDS 73635 - 75143 1739 ## COG1129 ABC-type sugar transport system, ATPase component 63 30 Op 6 . - CDS 75248 - 76231 1385 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 76378 - 76437 8.4 64 31 Op 1 9/0.036 + CDS 76645 - 77283 519 ## COG3683 ABC-type uncharacterized transport system, periplasmic component 65 31 Op 2 . + CDS 77274 - 78254 814 ## COG2215 ABC-type uncharacterized transport system, permease component 66 32 Tu 1 . - CDS 78364 - 79167 937 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 79203 - 79262 4.0 + Prom 79198 - 79257 3.4 67 33 Tu 1 . + CDS 79286 - 80017 809 ## COG0565 rRNA methylase + Prom 80165 - 80224 4.5 68 34 Op 1 . + CDS 80259 - 80750 395 ## COG1959 Predicted transcriptional regulator 69 34 Op 2 . + CDS 80668 - 80883 91 ## + Term 80957 - 80992 -0.8 70 35 Op 1 20/0.000 + CDS 80993 - 82207 1688 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 71 35 Op 2 14/0.011 + CDS 82234 - 82620 546 ## COG0822 NifU homolog involved in Fe-S cluster formation 72 35 Op 3 10/0.031 + CDS 82641 - 82964 468 ## COG0316 Uncharacterized conserved protein + Term 82980 - 83020 5.1 73 36 Op 1 11/0.025 + CDS 83039 - 83554 473 ## COG1076 DnaJ-domain-containing proteins 1 74 36 Op 2 13/0.013 + CDS 83570 - 85420 2428 ## COG0443 Molecular chaperone 75 36 Op 3 9/0.036 + CDS 85422 - 85757 327 ## COG0633 Ferredoxin 76 36 Op 4 2/0.602 + CDS 85769 - 85969 321 ## COG2975 Uncharacterized protein conserved in bacteria + Term 86018 - 86062 4.1 77 37 Tu 1 . + CDS 86149 - 87432 1809 ## COG0260 Leucyl aminopeptidase + Prom 87453 - 87512 2.5 78 38 Tu 1 . + CDS 87542 - 88318 945 ## CKO_00260 enhanced serine sensitivity protein SseB + Term 88381 - 88419 0.1 - Term 88125 - 88167 2.0 79 39 Tu 1 . - CDS 88417 - 89262 841 ## COG2897 Rhodanese-related sulfurtransferase - Prom 89287 - 89346 2.8 + Prom 89317 - 89376 4.3 80 40 Op 1 7/0.082 + CDS 89469 - 94400 5171 ## COG2373 Large extracellular alpha-helical protein 81 40 Op 2 1/0.738 + CDS 94404 - 96713 1911 ## COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC + Prom 96753 - 96812 4.0 82 41 Tu 1 . + CDS 96862 - 97293 418 ## COG0105 Nucleoside diphosphate kinase + Term 97457 - 97500 6.3 + Prom 97400 - 97459 2.8 83 42 Tu 1 . + CDS 97544 - 98710 1422 ## COG0820 Predicted Fe-S-cluster redox enzyme + Prom 98847 - 98906 4.5 84 43 Op 1 10/0.031 + CDS 98993 - 99994 766 ## COG1426 Uncharacterized protein conserved in bacteria 85 43 Op 2 11/0.025 + CDS 100021 - 101139 1278 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis + Term 101148 - 101180 3.1 86 44 Op 1 12/0.017 + CDS 101250 - 102524 1359 ## COG0124 Histidyl-tRNA synthetase 87 44 Op 2 9/0.036 + CDS 102538 - 103158 727 ## COG2976 Uncharacterized protein conserved in bacteria 88 44 Op 3 7/0.082 + CDS 103169 - 104347 1351 ## COG1520 FOG: WD40-like repeat + Term 104368 - 104412 9.2 + Prom 104372 - 104431 2.7 89 45 Tu 1 . + CDS 104465 - 105937 1873 ## COG1160 Predicted GTPases + Term 105952 - 105994 2.6 + Prom 105977 - 106036 3.1 90 46 Tu 1 . + CDS 106238 - 107779 1871 ## COG3104 Dipeptide/tripeptide permease + Prom 107880 - 107939 1.8 91 47 Tu 1 . + CDS 107968 - 108195 167 ## ECL_03850 hypothetical protein + Prom 108220 - 108279 6.6 92 48 Op 1 . + CDS 108382 - 110574 1948 ## SeSA_A2754 Aec1 93 48 Op 2 . + CDS 110621 - 111589 1248 ## SeHA_C2773 hypothetical protein + Term 111599 - 111634 6.0 94 49 Tu 1 . + CDS 111703 - 119013 5498 ## SPAB_00430 hypothetical protein + Term 119048 - 119083 6.5 - Term 118969 - 119007 -0.9 95 50 Tu 1 . - CDS 119016 - 120389 1242 ## COG1570 Exonuclease VII, large subunit - Prom 120424 - 120483 3.6 + Prom 120455 - 120514 5.1 96 51 Op 1 13/0.013 + CDS 120550 - 122016 1860 ## COG0516 IMP dehydrogenase/GMP reductase + Term 122027 - 122059 5.3 97 51 Op 2 . + CDS 122081 - 123658 2055 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 123703 - 123732 1.4 - Term 123691 - 123720 1.4 98 52 Tu 1 . - CDS 123787 - 124665 963 ## COG0668 Small-conductance mechanosensitive channel - Prom 124777 - 124836 4.2 - Term 124941 - 124998 10.1 99 53 Tu 1 . - CDS 125034 - 125237 70 ## CKO_00283 hypothetical protein - Prom 125358 - 125417 6.7 + Prom 125170 - 125229 1.9 100 54 Tu 1 . + CDS 125253 - 125426 70 ## gi|283832120|ref|ZP_06351861.1| conserved hypothetical protein + Prom 125451 - 125510 3.7 101 55 Tu 1 . + CDS 125756 - 127858 1217 ## COG2200 FOG: EAL domain + Term 128009 - 128050 0.0 - Term 127763 - 127799 -0.9 102 56 Op 1 11/0.025 - CDS 127838 - 129307 1443 ## COG0248 Exopolyphosphatase 103 56 Op 2 4/0.402 - CDS 129384 - 131450 2081 ## COG0855 Polyphosphate kinase - Prom 131495 - 131554 5.9 104 57 Op 1 21/0.000 - CDS 131654 - 132298 501 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 105 57 Op 2 . - CDS 132295 - 133332 1229 ## PROTEIN SUPPORTED gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase - Prom 133375 - 133434 5.1 + Prom 133322 - 133381 4.2 106 58 Tu 1 . + CDS 133628 - 135058 1333 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 135080 - 135113 3.1 + Prom 135140 - 135199 6.1 107 59 Op 1 5/0.226 + CDS 135242 - 135868 994 ## COG0035 Uracil phosphoribosyltransferase + Term 135884 - 135920 5.7 + Prom 135886 - 135945 2.7 108 59 Op 2 6/0.128 + CDS 135965 - 137254 1026 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 + Term 137263 - 137295 6.1 109 60 Tu 1 . + CDS 137326 - 138051 644 ## COG0593 ATPase involved in DNA replication initiation 110 61 Tu 1 . - CDS 138089 - 138448 569 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 138498 - 138557 3.2 - Term 138480 - 138537 16.2 111 62 Tu 1 . - CDS 138572 - 140035 1439 ## COG4783 Putative Zn-dependent protease, contains TPR repeats - Prom 140155 - 140214 2.5 + Prom 140002 - 140061 4.8 112 63 Tu 1 . + CDS 140259 - 141323 1291 ## COG0628 Predicted permease + Term 141328 - 141373 10.0 + Prom 141343 - 141402 3.2 113 64 Op 1 3/0.500 + CDS 141490 - 142152 688 ## COG3314 Uncharacterized protein conserved in bacteria 114 64 Op 2 . + CDS 142154 - 142615 529 ## COG0700 Uncharacterized membrane protein 115 64 Op 3 . + CDS 142627 - 143790 1056 ## CKO_00306 isoaspartyl dipeptidase + Term 143937 - 143965 -0.9 116 65 Op 1 4/0.402 - CDS 143911 - 144381 462 ## COG1225 Peroxiredoxin 117 65 Op 2 . - CDS 144381 - 144953 366 ## COG2716 Glycine cleavage system regulatory protein - Prom 144986 - 145045 6.3 + Prom 144841 - 144900 2.9 118 66 Op 1 9/0.036 + CDS 145099 - 145977 912 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 119 66 Op 2 1/0.738 + CDS 145994 - 147028 1088 ## COG3317 Uncharacterized lipoprotein + Term 147033 - 147070 7.1 120 67 Tu 1 . + CDS 147140 - 147853 1047 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase + Term 147906 - 147940 0.6 121 68 Op 1 4/0.402 + CDS 147983 - 148849 1009 ## COG2321 Predicted metalloprotease 122 68 Op 2 . + CDS 148865 - 150880 1464 ## COG1444 Predicted P-loop ATPase fused to an acetyltransferase 123 68 Op 3 . + CDS 150954 - 151652 829 ## COG0400 Predicted esterase 124 69 Op 1 . - CDS 151717 - 151917 324 ## ECBD_1217 hypothetical protein 125 69 Op 2 9/0.036 - CDS 151945 - 153072 1222 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 126 69 Op 3 3/0.500 - CDS 153076 - 153432 354 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 153513 - 153572 4.3 - Term 153909 - 153941 4.0 127 70 Tu 1 . - CDS 154024 - 157137 3278 ## COG0841 Cation/multidrug efflux pump - Prom 157252 - 157311 4.5 128 71 Tu 1 . - CDS 157322 - 159019 1716 ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - Prom 159079 - 159138 3.5 - Term 159088 - 159136 -0.6 129 72 Tu 1 . - CDS 159226 - 159456 78 ## CKO_00324 hypothetical protein - Prom 159499 - 159558 3.4 + Prom 159458 - 159517 1.6 130 73 Tu 1 . + CDS 159586 - 161262 1258 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Prom 161340 - 161399 1.9 131 74 Tu 1 . + CDS 161419 - 161994 757 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 132 75 Tu 1 . + CDS 162105 - 163148 822 ## CKO_00327 hypothetical protein 133 76 Tu 1 . - CDS 163138 - 165132 2083 ## COG0021 Transketolase - Prom 165222 - 165281 2.6 + Prom 165208 - 165267 4.0 134 77 Tu 1 . + CDS 165412 - 167691 2728 ## COG0281 Malic enzyme + Term 167712 - 167744 5.3 + Prom 167724 - 167783 4.9 135 78 Op 1 4/0.402 + CDS 167852 - 168187 388 ## COG4810 Ethanolamine utilization protein 136 78 Op 2 4/0.402 + CDS 168200 - 168679 267 ## COG4917 Ethanolamine utilization protein 137 78 Op 3 4/0.402 + CDS 168657 - 169358 812 ## COG4766 Ethanolamine utilization protein 138 78 Op 4 4/0.402 + CDS 169368 - 170171 772 ## COG4812 Ethanolamine utilization cobalamin adenosyltransferase 139 78 Op 5 1/0.738 + CDS 170168 - 171184 994 ## COG0280 Phosphotransacetylase 140 78 Op 6 4/0.402 + CDS 171221 - 171514 546 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein + Term 171524 - 171568 4.5 141 79 Op 1 4/0.402 + CDS 171629 - 171916 229 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 142 79 Op 2 4/0.402 + CDS 171928 - 173331 828 ## PROTEIN SUPPORTED gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P 143 79 Op 3 2/0.602 + CDS 173344 - 174183 1045 ## COG4820 Ethanolamine utilization protein, possible chaperonin 144 79 Op 4 2/0.602 + CDS 174173 - 175360 1226 ## COG1454 Alcohol dehydrogenase, class IV + Prom 175390 - 175449 4.4 145 80 Op 1 4/0.402 + CDS 175480 - 176712 1819 ## COG3192 Ethanolamine utilization protein 146 80 Op 2 5/0.226 + CDS 176709 - 178112 1705 ## COG4819 Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition 147 80 Op 3 8/0.048 + CDS 178124 - 179485 1719 ## COG4303 Ethanolamine ammonia-lyase, large subunit 148 80 Op 4 6/0.128 + CDS 179505 - 180395 932 ## COG4302 Ethanolamine ammonia-lyase, small subunit 149 80 Op 5 4/0.402 + CDS 180405 - 181064 665 ## COG4816 Ethanolamine utilization protein 150 80 Op 6 2/0.602 + CDS 181076 - 181606 456 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 151 80 Op 7 . + CDS 181655 - 182707 1061 ## COG2207 AraC-type DNA-binding domain-containing proteins 152 81 Op 1 4/0.402 - CDS 182801 - 183700 919 ## COG0408 Coproporphyrinogen III oxidase 153 81 Op 2 . - CDS 183703 - 184572 1008 ## COG0860 N-acetylmuramoyl-L-alanine amidase - Prom 184644 - 184703 3.4 + Prom 184638 - 184697 4.9 154 82 Op 1 . + CDS 184784 - 185209 589 ## COG0456 Acetyltransferases 155 82 Op 2 . + CDS 185196 - 185645 436 ## CKO_00354 hypothetical protein 156 82 Op 3 . + CDS 185705 - 186280 574 ## ECB_02332 hypothetical protein + Term 186336 - 186365 2.1 157 82 Op 4 1/0.738 + CDS 186374 - 187273 1152 ## COG2837 Predicted iron-dependent peroxidase + Term 187339 - 187369 3.0 + Prom 187280 - 187339 6.9 158 83 Tu 1 . + CDS 187473 - 188264 236 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 188294 - 188321 -0.4 + Prom 188329 - 188388 4.2 159 84 Op 1 7/0.082 + CDS 188425 - 189441 1295 ## COG4150 ABC-type sulfate transport system, periplasmic component 160 84 Op 2 17/0.000 + CDS 189442 - 190275 1105 ## COG0555 ABC-type sulfate transport system, permease component 161 84 Op 3 17/0.000 + CDS 190275 - 191150 1117 ## COG4208 ABC-type sulfate transport system, permease component 162 84 Op 4 5/0.226 + CDS 191140 - 192237 1392 ## COG1118 ABC-type sulfate/molybdate transport systems, ATPase component + Prom 192239 - 192298 2.3 163 85 Tu 1 . + CDS 192346 - 193266 553 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 193467 - 193513 -1.0 164 86 Op 1 1/0.738 - CDS 193356 - 194072 681 ## COG0518 GMP synthase - Glutamine amidotransferase domain 165 86 Op 2 . - CDS 194086 - 195378 1066 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 195409 - 195468 3.9 + Prom 195357 - 195416 4.3 166 87 Op 1 . + CDS 195461 - 196327 975 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase 167 87 Op 2 . + CDS 196324 - 196563 166 ## SARI_00452 hypothetical protein 168 88 Op 1 10/0.031 - CDS 196703 - 197212 738 ## COG2190 Phosphotransferase system IIA components 169 88 Op 2 25/0.000 - CDS 197253 - 198980 2026 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 170 88 Op 3 6/0.128 - CDS 199026 - 199283 441 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 199447 - 199506 4.4 - Term 199610 - 199638 1.0 171 89 Tu 1 8/0.048 - CDS 199667 - 200638 708 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 200670 - 200729 3.1 - Term 200752 - 200785 3.0 172 90 Tu 1 . - CDS 200802 - 201683 839 ## COG2981 Uncharacterized protein involved in cysteine biosynthesis - Prom 201781 - 201840 2.1 + Prom 201555 - 201614 3.0 173 91 Op 1 7/0.082 + CDS 201797 - 202801 864 ## COG3115 Cell division protein + Term 202828 - 202865 2.8 174 91 Op 2 3/0.500 + CDS 202873 - 204888 2294 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 175 91 Op 3 . + CDS 204890 - 205108 286 ## COG3530 Uncharacterized protein conserved in bacteria + Term 205326 - 205356 1.1 176 92 Tu 1 . - CDS 205105 - 206103 943 ## COG0385 Predicted Na+-dependent transporter - Prom 206123 - 206182 5.5 + Prom 206108 - 206167 6.3 177 93 Tu 1 . + CDS 206193 - 207119 980 ## COG0583 Transcriptional regulator + Prom 207214 - 207273 2.5 178 94 Op 1 1/0.738 + CDS 207303 - 208136 918 ## COG0005 Purine nucleoside phosphorylase + Term 208150 - 208181 3.2 179 94 Op 2 9/0.036 + CDS 208194 - 209450 1372 ## COG0477 Permeases of the major facilitator superfamily + Term 209462 - 209496 2.5 + Prom 209463 - 209522 2.4 180 95 Tu 1 . + CDS 209552 - 210436 479 ## COG0583 Transcriptional regulator + Term 210533 - 210574 2.8 - TRNA 210694 - 210769 99.5 # Lys TTT 0 0 - TRNA 210774 - 210849 94.3 # Val TAC 0 0 - TRNA 210897 - 210972 94.3 # Val TAC 0 0 - TRNA 211019 - 211094 95.3 # Val TAC 0 0 + Prom 211235 - 211294 3.5 181 96 Tu 1 . + CDS 211353 - 212768 1837 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 212779 - 212833 10.0 - Term 212779 - 212811 2.2 182 97 Op 1 . - CDS 212825 - 213217 266 ## SARI_00470 hypothetical protein 183 97 Op 2 . - CDS 213219 - 213581 357 ## CKO_00398 hypothetical protein - Prom 213614 - 213673 2.9 + TRNA 213803 - 213878 87.0 # Ala GGC 0 0 + TRNA 213921 - 213996 86.5 # Ala GGC 0 0 - Term 214085 - 214114 3.5 184 98 Tu 1 . - CDS 214141 - 215343 1606 ## COG1972 Nucleoside permease - Prom 215420 - 215479 3.8 + Prom 215472 - 215531 6.5 185 99 Tu 1 . + CDS 215688 - 216926 1385 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 216935 - 216961 -1.0 - Term 216918 - 216953 6.0 186 100 Tu 1 . - CDS 216959 - 217285 278 ## EFER_0778 hypothetical protein - Prom 217324 - 217383 2.7 - Term 217323 - 217354 1.5 187 101 Tu 1 . - CDS 217423 - 218412 989 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 218438 - 218497 3.2 + Prom 218367 - 218426 2.0 188 102 Tu 1 . + CDS 218596 - 220248 1117 ## COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes 189 103 Tu 1 . - CDS 220249 - 221484 1104 ## COG0038 Chloride channel protein EriC - Prom 221660 - 221719 4.0 + Prom 221544 - 221603 2.7 190 104 Tu 1 3/0.500 + CDS 221689 - 222654 1200 ## COG0837 Glucokinase + Term 222673 - 222712 3.4 + Prom 222686 - 222745 4.6 191 105 Op 1 7/0.082 + CDS 222846 - 223172 448 ## COG1445 Phosphotransferase system fructose-specific component IIB 192 105 Op 2 3/0.500 + CDS 223193 - 224440 1412 ## COG1299 Phosphotransferase system, fructose-specific IIC component 193 105 Op 3 3/0.500 + CDS 224458 - 225543 900 ## COG0006 Xaa-Pro aminopeptidase 194 105 Op 4 3/0.500 + CDS 225543 - 226583 594 ## COG1363 Cellulase M and related proteins 195 105 Op 5 . + CDS 226607 - 229102 2389 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 196 106 Tu 1 . - CDS 229181 - 229369 119 ## gi|283832215|ref|ZP_06351956.1| conserved hypothetical protein 197 107 Op 1 3/0.500 - CDS 229471 - 230334 528 ## COG2207 AraC-type DNA-binding domain-containing proteins 198 107 Op 2 9/0.036 - CDS 230350 - 231084 696 ## COG3279 Response regulator of the LytR/AlgR family 199 107 Op 3 . - CDS 231099 - 232778 1507 ## COG3275 Putative regulator of cell autolysis - Prom 232982 - 233041 4.7 + Prom 232967 - 233026 4.2 200 108 Tu 1 . + CDS 233181 - 234419 1263 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 234441 - 234481 5.6 + Prom 234749 - 234808 4.4 201 109 Tu 1 . + CDS 234916 - 235515 410 ## Pput_2752 hypothetical protein + Term 235534 - 235565 3.4 - Term 235522 - 235553 3.4 202 110 Tu 1 . - CDS 235557 - 236477 787 ## COG1560 Lauroyl/myristoyl acyltransferase + Prom 236687 - 236746 7.9 203 111 Tu 1 . + CDS 236918 - 237160 207 ## SeAg_B2541 hypothetical protein + Term 237227 - 237257 4.3 204 112 Tu 1 . - CDS 237266 - 238657 1224 ## COG2271 Sugar phosphate permease - Prom 238794 - 238853 6.5 + Prom 238772 - 238831 6.4 205 113 Op 1 3/0.500 + CDS 239072 - 240271 901 ## COG1840 ABC-type Fe3+ transport system, periplasmic component 206 113 Op 2 3/0.500 + CDS 240268 - 242274 1634 ## COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system 207 113 Op 3 . + CDS 242264 - 243511 1042 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - Term 243433 - 243473 -0.9 208 114 Tu 1 . - CDS 243615 - 244154 622 ## COG3122 Uncharacterized protein conserved in bacteria - Prom 244181 - 244240 5.6 209 115 Tu 1 . + CDS 244792 - 245424 419 ## Pat9b_4341 hypothetical protein + Term 245529 - 245557 -0.2 - TRNA 245499 - 245570 64.9 # Arg CCT 0 0 - Term 245478 - 245526 2.5 210 116 Tu 1 . - CDS 245646 - 246587 926 ## COG2116 Formate/nitrite family of transporters - Prom 246793 - 246852 4.2 + Prom 246740 - 246799 4.1 211 117 Tu 1 . + CDS 246876 - 247631 917 ## COG2853 Surface lipoprotein + Term 247646 - 247691 5.3 - Term 247634 - 247678 6.7 212 118 Tu 1 . - CDS 247693 - 249024 1134 ## COG2067 Long-chain fatty acid transport protein - Prom 249053 - 249112 4.9 + Prom 249256 - 249315 5.0 213 119 Tu 1 . + CDS 249396 - 249680 321 ## COG3691 Uncharacterized protein conserved in bacteria + Term 249694 - 249732 6.2 + Prom 249774 - 249833 3.6 214 120 Op 1 20/0.000 + CDS 249857 - 251167 1219 ## COG0183 Acetyl-CoA acetyltransferase 215 120 Op 2 5/0.226 + CDS 251167 - 253311 1559 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Prom 253353 - 253412 5.7 216 121 Tu 1 . + CDS 253539 - 254009 421 ## COG2062 Phosphohistidine phosphatase SixA - Term 253883 - 253920 -0.5 217 122 Tu 1 . - CDS 254130 - 254681 529 ## COG2840 Uncharacterized protein conserved in bacteria - Prom 254703 - 254762 4.9 + Prom 254652 - 254711 5.7 218 123 Op 1 3/0.500 + CDS 254848 - 255780 1543 ## PROTEIN SUPPORTED gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase 219 123 Op 2 7/0.082 + CDS 255820 - 256905 1147 ## COG0082 Chorismate synthase 220 123 Op 3 7/0.082 + CDS 256909 - 257733 683 ## COG3770 Murein endopeptidase 221 123 Op 4 5/0.226 + CDS 257733 - 258542 664 ## COG0730 Predicted permeases 222 123 Op 5 . + CDS 258542 - 259090 461 ## COG3101 Uncharacterized protein conserved in bacteria 223 123 Op 6 . + CDS 259123 - 259398 388 ## CKO_00460 hypothetical protein 224 124 Tu 1 . - CDS 259512 - 261512 1589 ## COG0665 Glycine/D-amino acid oxidases (deaminating) - Prom 261607 - 261666 2.1 + Prom 261576 - 261635 3.7 225 125 Tu 1 . + CDS 261672 - 262892 1328 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 262906 - 262953 7.1 - Term 262902 - 262932 3.0 226 126 Tu 1 . - CDS 262937 - 263461 456 ## SeHA_C2618 hypothetical protein - Prom 263598 - 263657 3.6 227 127 Tu 1 . + CDS 263755 - 264933 1286 ## COG0477 Permeases of the major facilitator superfamily 228 128 Tu 1 . - CDS 264930 - 265937 966 ## CKO_00465 flagella biosynthesis regulator - Prom 266060 - 266119 2.0 229 129 Op 1 5/0.226 + CDS 266046 - 267182 1196 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 267195 - 267237 6.2 230 129 Op 2 5/0.226 + CDS 267250 - 268263 1323 ## COG0136 Aspartate-semialdehyde dehydrogenase 231 129 Op 3 5/0.226 + CDS 268263 - 269075 733 ## COG0101 Pseudouridylate synthase 232 129 Op 4 5/0.226 + CDS 269100 - 269747 800 ## COG0586 Uncharacterized membrane-associated protein + Prom 269796 - 269855 4.7 233 130 Tu 1 . + CDS 269897 - 270811 1011 ## COG0777 Acetyl-CoA carboxylase beta subunit + Term 271021 - 271056 1.8 234 131 Op 1 7/0.082 + CDS 271080 - 272348 1258 ## COG0285 Folylpolyglutamate synthase 235 131 Op 2 7/0.082 + CDS 272377 - 273006 456 ## COG3147 Uncharacterized protein conserved in bacteria + Term 273081 - 273118 5.5 + Prom 273114 - 273173 4.8 236 132 Op 1 18/0.000 + CDS 273209 - 273697 389 ## COG1286 Uncharacterized membrane protein, required for colicin V production 237 132 Op 2 5/0.226 + CDS 273731 - 275248 1822 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 238 132 Op 3 5/0.226 + CDS 275346 - 275915 582 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase + Term 275946 - 275978 4.0 + Prom 276034 - 276093 3.4 239 133 Tu 1 9/0.036 + CDS 276203 - 276985 980 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 277031 - 277068 1.0 + Prom 277091 - 277150 6.5 240 134 Tu 1 12/0.017 + CDS 277233 - 278015 1114 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 278063 - 278108 1.0 + Prom 278037 - 278096 4.5 241 135 Op 1 12/0.017 + CDS 278202 - 278888 901 ## COG4215 ABC-type arginine transport system, permease component 242 135 Op 2 6/0.128 + CDS 278885 - 279592 684 ## COG4160 ABC-type arginine/histidine transport system, permease component 243 135 Op 3 . + CDS 279606 - 280379 261 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 244 136 Tu 1 . - CDS 280413 - 280835 427 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - Prom 280876 - 280935 2.0 245 137 Op 1 3/0.500 - CDS 281000 - 281893 960 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase 246 137 Op 2 3/0.500 - CDS 281913 - 282275 419 ## COG1539 Dihydroneopterin aldolase 247 137 Op 3 . - CDS 282330 - 282986 560 ## COG0625 Glutathione S-transferase - Prom 283208 - 283267 2.8 + Prom 283014 - 283073 2.0 248 138 Op 1 2/0.602 + CDS 283100 - 283744 528 ## COG0625 Glutathione S-transferase 249 138 Op 2 3/0.500 + CDS 283800 - 284351 462 ## COG0622 Predicted phosphoesterase 250 138 Op 3 . + CDS 284409 - 284963 517 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 284968 - 285025 0.5 - Term 284879 - 284919 4.1 251 139 Tu 1 . - CDS 285020 - 286540 1771 ## COG1288 Predicted membrane protein - Prom 286628 - 286687 8.6 252 140 Tu 1 14/0.011 - CDS 286742 - 288886 2454 ## COG0857 BioD-like N-terminal domain of phosphotransacetylase - Term 288923 - 288957 8.3 253 141 Tu 1 . - CDS 288963 - 290165 1485 ## COG0282 Acetate kinase - Prom 290388 - 290447 3.3 + Prom 290424 - 290483 6.8 254 142 Op 1 2/0.602 + CDS 290505 - 290960 356 ## COG3092 Uncharacterized protein conserved in bacteria + Term 290986 - 291016 1.2 + Prom 290963 - 291022 2.1 255 142 Op 2 . + CDS 291044 - 291538 644 ## COG3013 Uncharacterized conserved protein 256 142 Op 3 2/0.602 + CDS 291531 - 292208 633 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 292219 - 292248 1.2 257 143 Tu 1 . + CDS 292286 - 294118 1981 ## COG0471 Di- and tricarboxylate transporters - Term 294121 - 294158 -0.8 258 144 Tu 1 . - CDS 294222 - 294758 559 ## COG1896 Predicted hydrolases of HD superfamily - Prom 294849 - 294908 4.6 259 145 Tu 1 . - CDS 294938 - 296152 1287 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 296249 - 296308 4.7 260 146 Tu 1 . + CDS 297079 - 298017 662 ## COG0583 Transcriptional regulator + Term 298058 - 298103 6.2 + Prom 298404 - 298463 8.9 261 147 Op 1 30/0.000 + CDS 298651 - 299088 486 ## COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) 262 147 Op 2 9/0.036 + CDS 299104 - 299766 701 ## COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 263 147 Op 3 15/0.010 + CDS 299864 - 301654 2170 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 264 147 Op 4 23/0.000 + CDS 301657 - 302157 555 ## COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit 265 147 Op 5 12/0.017 + CDS 302154 - 303491 1620 ## COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 266 147 Op 6 18/0.000 + CDS 303564 - 306299 3056 ## COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) 267 147 Op 7 31/0.000 + CDS 306296 - 307273 1147 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 268 147 Op 8 28/0.000 + CDS 307288 - 307830 690 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 269 147 Op 9 30/0.000 + CDS 307842 - 308396 773 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 270 147 Op 10 26/0.000 + CDS 308393 - 308695 403 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 271 147 Op 11 30/0.000 + CDS 308692 - 310533 2500 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit + Prom 310558 - 310617 6.3 272 147 Op 12 22/0.000 + CDS 310785 - 312314 1964 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 273 147 Op 13 . + CDS 312321 - 313778 2087 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) + Term 313794 - 313832 4.2 - Term 313781 - 313822 4.3 274 148 Op 1 2/0.602 - CDS 313836 - 314840 1257 ## COG0835 Chemotaxis signal transduction protein 275 148 Op 2 . - CDS 314905 - 315822 642 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 315857 - 315916 2.0 + Prom 315719 - 315778 2.6 276 149 Op 1 4/0.402 + CDS 315890 - 316351 531 ## COG2153 Predicted acyltransferase 277 149 Op 2 1/0.738 + CDS 316415 - 316720 306 ## COG4575 Uncharacterized conserved protein + Term 316747 - 316780 2.5 + Prom 316744 - 316803 5.7 278 150 Op 1 10/0.031 + CDS 316825 - 318123 880 ## COG1169 Isochorismate synthase + Prom 318129 - 318188 2.9 279 150 Op 2 15/0.010 + CDS 318211 - 319881 1584 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 280 150 Op 3 9/0.036 + CDS 319878 - 320636 464 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 281 150 Op 4 5/0.226 + CDS 320651 - 321508 920 ## COG0447 Dihydroxynaphthoic acid synthase 282 150 Op 5 6/0.128 + CDS 321508 - 322470 975 ## COG1441 O-succinylbenzoate synthase 283 150 Op 6 . + CDS 322467 - 323915 974 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Prom 323928 - 323987 3.7 284 150 Op 7 . + CDS 324011 - 324274 208 ## SARI_00595 hypothetical protein 285 151 Op 1 9/0.036 - CDS 324277 - 324663 416 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 286 151 Op 2 5/0.226 - CDS 324663 - 324998 279 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 287 151 Op 3 6/0.128 - CDS 324995 - 326653 1595 ## COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family 288 151 Op 4 8/0.048 - CDS 326650 - 327552 640 ## COG0726 Predicted xylanase/chitin deacetylase 289 151 Op 5 12/0.017 - CDS 327549 - 329531 1968 ## COG0451 Nucleoside-diphosphate-sugar epimerases 290 151 Op 6 5/0.226 - CDS 329528 - 330511 1099 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 291 151 Op 7 . - CDS 330514 - 331653 883 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - Prom 331686 - 331745 6.3 292 152 Tu 1 . - CDS 331947 - 332372 427 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 332535 - 332594 4.0 + Prom 332533 - 332592 4.7 293 153 Op 1 . + CDS 332689 - 333231 733 ## SeHA_C2534 hypothetical protein 294 153 Op 2 . + CDS 333311 - 334507 1062 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA + Term 334632 - 334666 1.3 295 154 Op 1 1/0.738 - CDS 334546 - 335229 461 ## COG5464 Uncharacterized conserved protein 296 154 Op 2 3/0.500 - CDS 335214 - 335531 114 ## COG5464 Uncharacterized conserved protein - Term 335672 - 335707 7.2 297 155 Op 1 8/0.048 - CDS 335715 - 336905 1199 ## COG0247 Fe-S oxidoreductase 298 155 Op 2 9/0.036 - CDS 336902 - 338161 1054 ## COG3075 Anaerobic glycerol-3-phosphate dehydrogenase 299 155 Op 3 . - CDS 338151 - 339779 1642 ## COG0578 Glycerol-3-phosphate dehydrogenase - Prom 339882 - 339941 3.3 + Prom 339757 - 339816 6.3 300 156 Op 1 6/0.128 + CDS 340050 - 341408 1676 ## COG2271 Sugar phosphate permease 301 156 Op 2 . + CDS 341412 - 342479 1245 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 342595 - 342629 4.1 - Term 342468 - 342520 3.4 302 157 Tu 1 . - CDS 342540 - 343418 595 ## COG0583 Transcriptional regulator - Prom 343457 - 343516 4.0 + Prom 343432 - 343491 6.0 303 158 Tu 1 . + CDS 343578 - 344768 1140 ## COG0477 Permeases of the major facilitator superfamily 304 159 Op 1 8/0.048 - CDS 344772 - 345026 185 ## COG0633 Ferredoxin 305 159 Op 2 24/0.000 - CDS 345026 - 346156 1552 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 346204 - 346263 5.3 306 159 Op 3 1/0.738 - CDS 346269 - 348230 2501 ## COG0209 Ribonucleotide reductase, alpha subunit 307 159 Op 4 3/0.500 - CDS 348262 - 348555 188 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 348764 - 348823 7.6 308 160 Tu 1 . - CDS 349008 - 349736 938 ## COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase + Prom 349798 - 349857 5.8 309 161 Tu 1 . + CDS 349895 - 352531 3339 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Term 352548 - 352593 5.8 + Prom 352608 - 352667 5.4 310 162 Op 1 1/0.738 + CDS 352889 - 353410 414 ## COG3730 Phosphotransferase system sorbitol-specific component IIC 311 162 Op 2 6/0.128 + CDS 353420 - 353818 262 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 312 162 Op 3 1/0.738 + CDS 353799 - 354812 1246 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 313 162 Op 4 . + CDS 354824 - 355840 774 ## COG0673 Predicted dehydrogenases and related proteins + Term 355872 - 355915 1.2 314 163 Tu 1 . - CDS 355933 - 356688 646 ## Entcl_1492 transcriptional regulator, RpiR family 315 164 Tu 1 . + CDS 357054 - 359900 2640 ## COG0642 Signal transduction histidine kinase 316 165 Op 1 12/0.017 - CDS 360002 - 360652 828 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 317 165 Op 2 . - CDS 360669 - 363338 2343 ## COG0642 Signal transduction histidine kinase + Prom 363813 - 363872 7.8 318 166 Tu 1 . + CDS 364068 - 365168 1534 ## COG3203 Outer membrane protein (porin) + Term 365183 - 365227 2.1 319 167 Op 1 3/0.500 + CDS 365285 - 366337 1168 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 320 167 Op 2 4/0.402 + CDS 366417 - 367481 866 ## COG2169 Adenosine deaminase 321 167 Op 3 4/0.402 + CDS 367481 - 368131 475 ## COG3145 Alkylated DNA repair protein + Term 368141 - 368178 1.0 322 168 Tu 1 . + CDS 368207 - 369850 2043 ## COG4615 ABC-type siderophore export system, fused ATPase and permease components + Term 369857 - 369902 -0.9 + Prom 369868 - 369927 6.8 323 169 Tu 1 . + CDS 369956 - 371392 1587 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) + Prom 371440 - 371499 3.7 324 170 Tu 1 . + CDS 371602 - 373263 1940 ## COG0579 Predicted dehydrogenase + Term 373420 - 373464 3.0 - Term 373257 - 373298 7.1 325 171 Tu 1 . - CDS 373309 - 373818 549 ## COG4574 Serine protease inhibitor ecotin - Prom 373957 - 374016 5.7 326 172 Tu 1 . - CDS 374461 - 374703 76 ## 327 173 Op 1 10/0.031 + CDS 374702 - 374965 316 ## COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase 328 173 Op 2 10/0.031 + CDS 374962 - 377448 3212 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 329 173 Op 3 7/0.082 + CDS 377455 - 378150 572 ## COG1145 Ferredoxin 330 173 Op 4 4/0.402 + CDS 378137 - 379000 627 ## COG0348 Polyferredoxin 331 173 Op 5 7/0.082 + CDS 378997 - 379446 484 ## COG3043 Nitrate reductase cytochrome c-type subunit 332 173 Op 6 3/0.500 + CDS 379456 - 380058 527 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 333 173 Op 7 14/0.011 + CDS 380079 - 380699 513 ## COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component 334 173 Op 8 14/0.011 + CDS 380696 - 381355 720 ## COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component 335 174 Op 1 9/0.036 + CDS 381459 - 382169 840 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 336 174 Op 2 9/0.036 + CDS 382166 - 382378 164 ## COG3114 Heme exporter protein D 337 174 Op 3 16/0.000 + CDS 382375 - 382854 474 ## COG2332 Cytochrome c-type biogenesis protein CcmE 338 174 Op 4 11/0.025 + CDS 382851 - 384800 2491 ## COG1138 Cytochrome c biogenesis factor 339 174 Op 5 5/0.226 + CDS 384797 - 385354 753 ## COG0526 Thiol-disulfide isomerase and thioredoxins 340 174 Op 6 . + CDS 385351 - 386400 1196 ## COG4235 Cytochrome c biogenesis factor + Term 386467 - 386504 3.3 - Term 386454 - 386491 3.5 341 175 Tu 1 . - CDS 386501 - 387148 883 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 342 176 Tu 1 . + CDS 387775 - 388431 310 ## SeHA_C2913 hypothetical protein + Prom 388600 - 388659 3.2 343 177 Op 1 1/0.738 + CDS 388727 - 388942 59 ## COG3311 Predicted transcriptional regulator 344 177 Op 2 . + CDS 388985 - 390661 949 ## COG5519 Superfamily II helicase and inactivated derivatives + Term 390803 - 390839 -1.0 + Prom 391914 - 391973 6.7 345 178 Tu 1 . + CDS 392024 - 393067 129 ## Sama_2922 P-loop ATPase-like protein + Term 393314 - 393357 -0.9 346 179 Tu 1 . + CDS 396135 - 396803 -40 ## gi|283832367|ref|ZP_06352108.1| conserved hypothetical protein + Term 396989 - 397030 3.4 347 180 Op 1 . + CDS 397103 - 397786 144 ## gi|283832368|ref|ZP_06352109.1| conserved hypothetical protein 348 180 Op 2 . + CDS 397797 - 397997 306 ## gi|291085112|ref|ZP_06352110.2| conserved hypothetical protein + Term 398022 - 398067 5.6 349 181 Tu 1 . + CDS 398844 - 399719 751 ## COG0582 Integrase 350 182 Tu 1 . - CDS 399860 - 401092 391 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Prom 401223 - 401282 6.3 + Prom 401065 - 401124 3.0 351 183 Tu 1 . + CDS 401152 - 401286 84 ## gi|283832373|ref|ZP_06352114.1| conserved hypothetical protein + Term 401427 - 401482 5.0 - TRNA 401302 - 401378 78.0 # Pro GGG 0 0 - Term 401207 - 401247 8.3 352 184 Op 1 8/0.048 - CDS 401453 - 403171 1920 ## COG3083 Predicted hydrolase of alkaline phosphatase superfamily 353 184 Op 2 . - CDS 403245 - 403472 204 ## COG3082 Uncharacterized protein conserved in bacteria - Prom 403591 - 403650 4.2 + Prom 403525 - 403584 3.7 354 185 Tu 1 . + CDS 403607 - 404614 1320 ## COG3081 Nucleoid-associated protein + Term 404678 - 404705 1.5 - Term 404653 - 404703 9.1 355 186 Tu 1 . - CDS 404715 - 404999 464 ## PROTEIN SUPPORTED gi|157144862|ref|YP_001452180.1| 50S ribosomal protein L25 - Term 405008 - 405046 3.3 356 187 Tu 1 . - CDS 405124 - 406884 1621 ## COG1061 DNA or RNA helicases of superfamily II + Prom 406913 - 406972 3.6 357 188 Op 1 8/0.048 + CDS 407036 - 407743 667 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 358 188 Op 2 . + CDS 407759 - 408949 1098 ## COG0477 Permeases of the major facilitator superfamily + Term 408959 - 409002 8.5 + Prom 409196 - 409255 6.5 359 189 Tu 1 . + CDS 409286 - 409627 343 ## SPAB_00781 hypothetical protein + Term 409634 - 409675 1.1 360 190 Op 1 11/0.025 - CDS 409631 - 411220 316 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 361 190 Op 2 11/0.025 - CDS 411222 - 412247 1112 ## COG4239 ABC-type uncharacterized transport system, permease component 362 190 Op 3 11/0.025 - CDS 412247 - 413341 1316 ## COG4174 ABC-type uncharacterized transport system, permease component 363 190 Op 4 2/0.602 - CDS 413342 - 415156 1555 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 364 191 Tu 1 . - CDS 415257 - 416768 1023 ## COG2200 FOG: EAL domain - Prom 416851 - 416910 3.8 - Term 416900 - 416946 3.2 365 192 Tu 1 . - CDS 416985 - 417449 350 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 - Term 417903 - 417960 -0.4 366 193 Op 1 3/0.500 - CDS 417971 - 418684 664 ## COG0671 Membrane-associated phospholipid phosphatase 367 193 Op 2 3/0.500 - CDS 418719 - 419705 856 ## COG0523 Putative GTPases (G3E family) - Prom 419732 - 419791 3.2 368 194 Tu 1 . - CDS 419825 - 421291 1366 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Prom 421320 - 421379 7.2 369 195 Tu 1 . + CDS 421494 - 422684 1477 ## COG1312 D-mannonate dehydratase - Term 422570 - 422610 3.2 370 196 Tu 1 . - CDS 422730 - 424202 732 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 424330 - 424389 5.8 + Prom 424175 - 424234 6.0 371 197 Op 1 7/0.082 + CDS 424369 - 425502 743 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 372 197 Op 2 5/0.226 + CDS 425512 - 428010 2410 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 373 197 Op 3 . + CDS 428000 - 428632 475 ## COG3381 Uncharacterized component of anaerobic dehydrogenases + Term 428801 - 428832 0.0 374 198 Tu 1 . - CDS 429427 - 429999 860 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 430034 - 430093 4.0 + Prom 429929 - 429988 3.9 375 199 Tu 1 . + CDS 430157 - 430411 159 ## COG0727 Predicted Fe-S-cluster oxidoreductase 376 200 Tu 1 . - CDS 430408 - 431589 1219 ## COG0477 Permeases of the major facilitator superfamily - Prom 431614 - 431673 2.9 + Prom 431834 - 431893 2.5 377 201 Op 1 11/0.025 + CDS 431957 - 433087 1475 ## COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain 378 201 Op 2 19/0.000 + CDS 433087 - 434025 1142 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 379 201 Op 3 . + CDS 434042 - 435730 2195 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 435747 - 435780 6.1 + Prom 435758 - 435817 3.0 380 202 Tu 1 . + CDS 435877 - 436113 245 ## SeSA_A1798 hypothetical protein - Term 436124 - 436175 9.0 381 203 Op 1 . - CDS 436182 - 437480 1175 ## COG2704 Anaerobic C4-dicarboxylate transporter 382 203 Op 2 . - CDS 437556 - 438275 336 ## COG1794 Aspartate racemase + Prom 438255 - 438314 3.0 383 204 Op 1 . + CDS 438371 - 438583 113 ## gi|283832405|ref|ZP_06352146.1| conserved hypothetical protein 384 204 Op 2 . + CDS 438627 - 439538 623 ## COG0583 Transcriptional regulator + Term 439543 - 439578 -0.9 385 205 Op 1 5/0.226 - CDS 439570 - 440427 901 ## COG0648 Endonuclease IV 386 205 Op 2 . - CDS 440499 - 441548 1113 ## COG2855 Predicted membrane protein - Prom 441599 - 441658 12.2 + Prom 441569 - 441628 9.3 387 206 Op 1 . + CDS 441793 - 442674 786 ## COG0583 Transcriptional regulator + Term 442794 - 442853 0.6 + Prom 442782 - 442841 4.5 388 206 Op 2 . + CDS 442869 - 444338 1924 ## COG0833 Amino acid transporters + Term 444362 - 444396 5.0 - Term 444341 - 444391 10.7 389 207 Tu 1 . - CDS 444403 - 446388 2273 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins - Prom 446487 - 446546 7.2 - Term 446502 - 446553 5.0 390 208 Op 1 2/0.602 - CDS 446733 - 448055 1072 ## COG2271 Sugar phosphate permease 391 208 Op 2 . - CDS 448087 - 448974 557 ## COG0560 Phosphoserine phosphatase - Prom 449074 - 449133 5.2 + Prom 448909 - 448968 7.5 392 209 Op 1 1/0.738 + CDS 449191 - 450573 741 ## COG1760 L-serine deaminase 393 209 Op 2 . + CDS 450551 - 450940 323 ## COG1396 Predicted transcriptional regulators - Term 450864 - 450915 4.0 394 210 Tu 1 . - CDS 450941 - 451777 744 ## COG0627 Predicted esterase - Prom 451818 - 451877 4.4 + Prom 451840 - 451899 4.1 395 211 Op 1 4/0.402 + CDS 452088 - 452756 771 ## COG0302 GTP cyclohydrolase I 396 211 Op 2 4/0.402 + CDS 452771 - 453928 1220 ## COG2311 Predicted membrane protein 397 212 Tu 1 . + CDS 454073 - 455098 1105 ## COG1609 Transcriptional regulators + Prom 455116 - 455175 3.8 398 213 Op 1 16/0.000 + CDS 455391 - 456389 1285 ## COG1879 ABC-type sugar transport system, periplasmic component 399 213 Op 2 10/0.031 + CDS 456461 - 457981 195 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 400 213 Op 3 . + CDS 457997 - 459007 1347 ## COG4211 ABC-type glucose/galactose transport system, permease component + Term 459024 - 459065 10.1 - Term 459006 - 459058 15.4 401 214 Op 1 4/0.402 - CDS 459065 - 460300 1295 ## COG0167 Dihydroorotate dehydrogenase 402 214 Op 2 . - CDS 460294 - 461535 755 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - Prom 461578 - 461637 4.9 - Term 461718 - 461754 0.2 403 215 Op 1 . - CDS 461769 - 462008 115 ## SG2221 hypothetical protein 404 215 Op 2 3/0.500 - CDS 462011 - 462730 836 ## COG2949 Uncharacterized membrane protein - Prom 462763 - 462822 1.8 405 216 Tu 1 . - CDS 462866 - 463750 885 ## COG0295 Cytidine deaminase - Prom 463838 - 463897 5.2 406 217 Op 1 23/0.000 - CDS 463899 - 464594 771 ## COG1346 Putative effector of murein hydrolase 407 217 Op 2 3/0.500 - CDS 464591 - 464989 546 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 465010 - 465069 2.8 408 218 Op 1 9/0.036 - CDS 465121 - 465363 265 ## COG0583 Transcriptional regulator 409 218 Op 2 . - CDS 465396 - 466028 420 ## COG0583 Transcriptional regulator - Prom 466061 - 466120 4.3 + Prom 466054 - 466113 2.7 410 219 Op 1 3/0.500 + CDS 466155 - 467513 1539 ## COG0477 Permeases of the major facilitator superfamily 411 219 Op 2 7/0.082 + CDS 467525 - 468562 1199 ## COG3435 Gentisate 1,2-dioxygenase 412 219 Op 3 9/0.036 + CDS 468578 - 469279 898 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 413 219 Op 4 3/0.500 + CDS 469288 - 469932 569 ## COG0625 Glutathione S-transferase 414 219 Op 5 3/0.500 + CDS 469947 - 471140 1285 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Term 471161 - 471195 6.0 415 220 Tu 1 1/0.738 + CDS 471202 - 472152 998 ## COG0042 tRNA-dihydrouridine synthase + Term 472225 - 472260 2.5 + Prom 473029 - 473088 8.9 416 221 Tu 1 . + CDS 473261 - 474628 1302 ## COG1538 Outer membrane protein + Term 474636 - 474673 8.1 - Term 474404 - 474444 -0.2 417 222 Tu 1 . - CDS 474653 - 475225 687 ## COG0586 Uncharacterized membrane-associated protein - Prom 475379 - 475438 6.1 + Prom 475338 - 475397 3.4 418 223 Tu 1 . + CDS 475468 - 476055 593 ## CKO_00659 hypothetical protein + Prom 476125 - 476184 2.4 419 224 Tu 1 . + CDS 476236 - 477183 1093 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 477220 - 477266 2.2 - Term 477174 - 477218 5.0 420 225 Tu 1 . - CDS 477250 - 478959 1784 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 479143 - 479202 2.6 + Prom 479101 - 479160 3.8 421 226 Tu 1 . + CDS 479192 - 481489 2828 ## COG1472 Beta-glucosidase-related glycosidases + Term 481556 - 481596 9.0 + Prom 481550 - 481609 8.2 422 227 Op 1 13/0.013 + CDS 481722 - 482639 1082 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 423 227 Op 2 24/0.000 + CDS 482688 - 483821 941 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 424 227 Op 3 24/0.000 + CDS 483814 - 484761 1030 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 425 227 Op 4 . + CDS 484745 - 485476 705 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 485565 - 485612 3.2 - Term 485281 - 485325 4.3 426 228 Op 1 . - CDS 485457 - 485564 137 ## 427 228 Op 2 . - CDS 485616 - 486347 566 ## COG0789 Predicted transcriptional regulators - Prom 486370 - 486429 2.1 + Prom 486334 - 486393 2.7 428 229 Op 1 9/0.036 + CDS 486573 - 488258 1504 ## COG3275 Putative regulator of cell autolysis 429 229 Op 2 2/0.602 + CDS 488255 - 488974 806 ## COG3279 Response regulator of the LytR/AlgR family 430 229 Op 3 . + CDS 489021 - 489491 551 ## COG4807 Uncharacterized protein conserved in bacteria + Term 489501 - 489543 4.7 - Term 489489 - 489528 7.1 431 230 Tu 1 . - CDS 489535 - 489993 473 ## COG4808 Uncharacterized protein conserved in bacteria - Prom 490128 - 490187 4.1 - Term 490161 - 490191 3.0 432 231 Tu 1 . - CDS 490207 - 492240 2452 ## COG0143 Methionyl-tRNA synthetase - Prom 492272 - 492331 4.5 + Prom 492308 - 492367 4.5 433 232 Tu 1 . + CDS 492406 - 493515 1255 ## COG0489 ATPases involved in chromosome partitioning + Prom 494115 - 494174 6.3 434 233 Op 1 7/0.082 + CDS 494343 - 494885 110 ## COG3539 P pilus assembly protein, pilin FimA + Term 494890 - 494928 5.6 435 233 Op 2 10/0.031 + CDS 494937 - 495620 287 ## COG3121 P pilus assembly protein, chaperone PapD 436 233 Op 3 . + CDS 495633 - 498113 2364 ## COG3188 P pilus assembly protein, porin PapC 437 234 Tu 1 . + CDS 498627 - 499157 33 ## ECSE_2377 putative fimbrial protein - Term 499088 - 499122 1.1 438 235 Tu 1 . - CDS 499209 - 499535 400 ## COG5455 Predicted integral membrane protein - Prom 499572 - 499631 5.5 + Prom 499696 - 499755 3.8 439 236 Op 1 12/0.017 + CDS 499907 - 500695 615 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 440 236 Op 2 1/0.738 + CDS 500692 - 501492 702 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 441 236 Op 3 . + CDS 501534 - 502280 679 ## COG2188 Transcriptional regulators - Term 502160 - 502218 11.5 442 237 Op 1 5/0.226 - CDS 502254 - 503222 961 ## COG0524 Sugar kinases, ribokinase family 443 237 Op 2 4/0.402 - CDS 503219 - 504223 934 ## COG1397 ADP-ribosylglycohydrolase 444 237 Op 3 . - CDS 504220 - 505497 1480 ## COG0477 Permeases of the major facilitator superfamily - Prom 505539 - 505598 3.2 + Prom 505509 - 505568 4.9 445 238 Tu 1 . + CDS 505750 - 506802 1258 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes + Term 506850 - 506886 -1.0 - Term 506716 - 506767 4.1 446 239 Tu 1 . - CDS 506821 - 507720 830 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 507762 - 507821 2.5 - Term 507801 - 507836 5.1 447 240 Tu 1 4/0.402 - CDS 507851 - 508582 1048 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 508677 - 508736 9.8 - Term 508691 - 508731 4.1 448 241 Op 1 12/0.017 - CDS 508851 - 509519 946 ## COG4160 ABC-type arginine/histidine transport system, permease component 449 241 Op 2 12/0.017 - CDS 509519 - 510235 828 ## COG4215 ABC-type arginine transport system, permease component 450 241 Op 3 7/0.082 - CDS 510242 - 510973 1121 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 451 241 Op 4 . - CDS 510990 - 511718 483 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 511881 - 511940 6.4 - Term 511987 - 512036 9.5 452 242 Tu 1 . - CDS 512071 - 512586 517 ## CKO_02238 putative lipoprotein - Prom 512612 - 512671 3.9 + Prom 512584 - 512643 5.7 453 243 Op 1 4/0.402 + CDS 512713 - 513036 529 ## COG0393 Uncharacterized conserved protein 454 243 Op 2 . + CDS 513033 - 513863 845 ## COG3023 Negative regulator of beta-lactamase expression - Term 513576 - 513618 -0.1 455 244 Op 1 4/0.402 - CDS 513860 - 514873 955 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 514900 - 514959 2.5 456 244 Op 2 4/0.402 - CDS 514971 - 516407 1148 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 457 244 Op 3 5/0.226 - CDS 516412 - 517413 1074 ## COG2008 Threonine aldolase 458 244 Op 4 . - CDS 517450 - 519168 1477 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - Prom 519274 - 519333 5.0 + Prom 519178 - 519237 4.7 459 245 Op 1 . + CDS 519321 - 519755 568 ## EFER_1016 hypothetical protein + Prom 519794 - 519853 1.7 460 245 Op 2 . + CDS 519899 - 520108 148 ## ECSP_1442 putative Gef-like protein encoded by prophage CP-933N + Term 520116 - 520148 5.0 - Term 520162 - 520214 13.1 461 246 Op 1 2/0.602 - CDS 520227 - 521195 878 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 462 246 Op 2 2/0.602 - CDS 521206 - 522858 2163 ## COG1151 6Fe-6S prismane cluster-containing protein - Prom 522891 - 522950 2.1 463 247 Tu 1 . - CDS 523014 - 523913 665 ## COG2431 Predicted membrane protein - Prom 523952 - 524011 2.2 - Term 524002 - 524053 6.1 464 248 Tu 1 . - CDS 524056 - 524751 726 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 524961 - 525020 7.4 + Prom 524929 - 524988 4.4 465 249 Tu 1 . + CDS 525122 - 526780 1341 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family + Term 526802 - 526864 3.0 - Term 526727 - 526771 -0.9 466 250 Tu 1 . - CDS 526777 - 527724 552 ## COG2990 Uncharacterized protein conserved in bacteria - Prom 527909 - 527968 5.5 + Prom 527750 - 527809 4.3 467 251 Op 1 13/0.013 + CDS 527855 - 529000 1446 ## COG0845 Membrane-fusion protein 468 251 Op 2 . + CDS 528997 - 530943 364 ## PROTEIN SUPPORTED gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 + Term 530961 - 530994 4.1 - Term 530948 - 530981 4.1 469 252 Tu 1 . - CDS 531018 - 531242 240 ## COG1278 Cold shock proteins - Prom 531331 - 531390 3.7 + Prom 531440 - 531499 3.7 470 253 Op 1 19/0.000 + CDS 531566 - 531886 346 ## COG2127 Uncharacterized conserved protein 471 253 Op 2 . + CDS 531917 - 534193 1349 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 534210 - 534244 5.1 472 254 Tu 1 . + CDS 534270 - 534599 219 ## Rahaq_3066 hypothetical protein - Term 534649 - 534715 8.0 473 255 Tu 1 . - CDS 534830 - 535021 65 ## ECB_02012 integrase - Prom 535075 - 535134 2.0 474 256 Tu 1 . + CDS 534982 - 535776 215 ## SNSL254_A4357 replication gene A protein (EC:3.1.-.-) + Term 535833 - 535874 4.0 - Term 535990 - 536026 2.3 475 257 Tu 1 . - CDS 536051 - 538132 335 ## Acid345_3761 hypothetical protein - Prom 538169 - 538228 5.3 - Term 538263 - 538311 2.0 476 258 Op 1 . - CDS 538535 - 538939 388 ## COG5518 Bacteriophage capsid portal protein 477 258 Op 2 . - CDS 539002 - 539328 77 ## COG5518 Bacteriophage capsid portal protein 478 259 Op 1 . - CDS 539548 - 539802 325 ## Ent638_3501 hypothetical protein 479 259 Op 2 . - CDS 539836 - 540156 336 ## COG5484 Uncharacterized conserved protein - Prom 540232 - 540291 1.9 - Term 540696 - 540736 10.6 480 260 Tu 1 . - CDS 540828 - 541238 103 ## gi|283832499|ref|ZP_06352240.1| hypothetical protein CIT292_06441 - Prom 541484 - 541543 4.0 - Term 541735 - 541772 6.3 481 261 Tu 1 . - CDS 541909 - 543270 1628 ## COG0826 Collagenase and related proteases 482 262 Op 1 . - CDS 543391 - 544122 718 ## ROD_22121 hypothetical protein 483 262 Op 2 40/0.000 - CDS 544200 - 544922 754 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 484 262 Op 3 10/0.031 - CDS 544919 - 546322 1222 ## COG0642 Signal transduction histidine kinase 485 262 Op 4 5/0.226 - CDS 546319 - 547728 1689 ## COG0477 Permeases of the major facilitator superfamily 486 262 Op 5 10/0.031 - CDS 547725 - 550805 2914 ## COG0841 Cation/multidrug efflux pump 487 262 Op 6 27/0.000 - CDS 550806 - 553928 3262 ## COG0841 Cation/multidrug efflux pump 488 262 Op 7 1/0.738 - CDS 553928 - 555175 1273 ## COG0845 Membrane-fusion protein - Prom 555211 - 555270 3.8 - Term 555507 - 555543 -0.9 489 263 Tu 1 . - CDS 555614 - 556966 1307 ## COG0443 Molecular chaperone - Prom 556995 - 557054 4.0 + Prom 556832 - 556891 2.6 490 264 Tu 1 . + CDS 556980 - 557972 784 ## COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 491 265 Tu 1 . - CDS 557940 - 561269 2887 ## COG2202 FOG: PAS/PAC domain - Prom 561345 - 561404 4.8 + Prom 561279 - 561338 2.4 492 266 Op 1 4/0.402 + CDS 561577 - 562218 696 ## COG0572 Uridine kinase 493 266 Op 2 4/0.402 + CDS 562310 - 562891 649 ## COG0717 Deoxycytidine deaminase 494 266 Op 3 . + CDS 562917 - 564770 1908 ## COG2982 Uncharacterized protein involved in outer membrane biogenesis + Term 564777 - 564825 2.1 495 267 Tu 1 . - CDS 564815 - 566416 1640 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 566511 - 566570 8.1 + Prom 566909 - 566968 7.7 496 268 Op 1 6/0.128 + CDS 567120 - 568193 987 ## COG1596 Periplasmic protein involved in polysaccharide export 497 268 Op 2 3/0.500 + CDS 568199 - 568648 267 ## COG0394 Protein-tyrosine-phosphatase 498 268 Op 3 2/0.602 + CDS 568645 - 570807 2334 ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis 499 268 Op 4 4/0.402 + CDS 570885 - 571727 761 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 500 268 Op 5 5/0.226 + CDS 571730 - 572218 513 ## COG1045 Serine acetyltransferase 501 268 Op 6 . + CDS 572215 - 573432 1004 ## COG0438 Glycosyltransferase 502 268 Op 7 . + CDS 573407 - 574624 864 ## ECO111_2775 putative colanic acid biosynthesis protein 503 268 Op 8 7/0.082 + CDS 574630 - 575376 583 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 504 268 Op 9 5/0.226 + CDS 575386 - 575940 398 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 505 268 Op 10 14/0.011 + CDS 575965 - 577086 1336 ## COG1089 GDP-D-mannose dehydratase 506 268 Op 11 3/0.500 + CDS 577089 - 578054 874 ## COG0451 Nucleoside-diphosphate-sugar epimerases 507 268 Op 12 6/0.128 + CDS 578057 - 578536 473 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 508 268 Op 13 5/0.226 + CDS 578533 - 579759 884 ## COG0438 Glycosyltransferase 509 268 Op 14 11/0.025 + CDS 579759 - 581195 1390 ## COG0836 Mannose-1-phosphate guanylyltransferase 510 269 Op 1 4/0.402 + CDS 581322 - 582692 1462 ## COG1109 Phosphomannomutase 511 269 Op 2 7/0.082 + CDS 582746 - 584140 1309 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 512 269 Op 3 4/0.402 + CDS 584142 - 585620 1674 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 513 269 Op 4 7/0.082 + CDS 585644 - 586924 1198 ## COG2327 Uncharacterized conserved protein 514 269 Op 5 . + CDS 586921 - 588141 1008 ## COG0438 Glycosyltransferase + Term 588190 - 588222 1.4 515 270 Tu 1 . + CDS 588543 - 589547 581 ## CKO_00743 putative colanic acid biosynthesis protein + Prom 589630 - 589689 6.6 516 271 Tu 1 . + CDS 589713 - 590606 914 ## COG1210 UDP-glucose pyrophosphorylase + Term 590814 - 590861 1.2 + Prom 590699 - 590758 6.6 517 272 Tu 1 . + CDS 590978 - 592060 680 ## COG1088 dTDP-D-glucose 4,6-dehydratase + Prom 592395 - 592454 4.6 518 273 Tu 1 . + CDS 592572 - 593204 4 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis + Term 593268 - 593302 -0.6 + Prom 593453 - 593512 4.5 519 274 Tu 1 . + CDS 593536 - 593922 68 ## ECL_01361 WbqC-like family protein + Prom 593968 - 594027 3.4 520 275 Tu 1 . + CDS 594137 - 594358 132 ## gi|283832539|ref|ZP_06352280.1| ribosomal-protein-alanine acetyltransferase + Term 594401 - 594438 0.5 + Prom 595235 - 595294 1.7 521 276 Tu 1 . + CDS 595338 - 595889 -170 ## DP0039 O-antigen transporter 522 277 Op 1 . + CDS 596497 - 597066 -4 ## gi|283832541|ref|ZP_06352282.1| conserved hypothetical protein 523 277 Op 2 . + CDS 597067 - 597957 -8 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 597959 - 598018 1.8 524 278 Op 1 . + CDS 598091 - 598612 152 ## Bacsa_0065 putative WbuN protein + Prom 598624 - 598683 3.3 525 278 Op 2 . + CDS 598705 - 599379 -114 ## Tresu_1325 hypothetical protein + Prom 599808 - 599867 5.8 526 279 Tu 1 . + CDS 599923 - 600534 22 ## COG0438 Glycosyltransferase + Prom 601256 - 601315 4.5 527 280 Tu 1 . + CDS 601384 - 601644 149 ## COG1209 dTDP-glucose pyrophosphorylase + Prom 601659 - 601718 6.9 528 281 Tu 1 . + CDS 601801 - 603207 1840 ## COG0362 6-phosphogluconate dehydrogenase + Term 603234 - 603268 5.0 + Prom 603242 - 603301 4.7 529 282 Tu 1 . + CDS 603404 - 604570 1140 ## COG1004 Predicted UDP-glucose 6-dehydrogenase + Term 604589 - 604616 0.1 - Term 604562 - 604622 12.2 530 283 Tu 1 . - CDS 604630 - 605634 748 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Prom 605943 - 606002 6.3 531 284 Tu 1 . + CDS 606053 - 607012 1022 ## COG3765 Chain length determinant protein + Term 607048 - 607076 2.1 - Term 607034 - 607062 2.1 532 285 Op 1 24/0.000 - CDS 607081 - 607692 733 ## COG0139 Phosphoribosyl-AMP cyclohydrolase 533 285 Op 2 23/0.000 - CDS 607686 - 608462 917 ## COG0107 Imidazoleglycerol-phosphate synthase 534 285 Op 3 25/0.000 - CDS 608444 - 609181 811 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 535 285 Op 4 18/0.000 - CDS 609181 - 609771 666 ## COG0118 Glutamine amidotransferase 536 285 Op 5 13/0.013 - CDS 609771 - 610838 1230 ## COG0131 Imidazoleglycerol-phosphate dehydratase 537 285 Op 6 19/0.000 - CDS 610835 - 611914 1084 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 538 285 Op 7 18/0.000 - CDS 611911 - 613215 1337 ## COG0141 Histidinol dehydrogenase - Prom 613280 - 613339 3.8 539 285 Op 8 . - CDS 613342 - 614241 1177 ## COG0040 ATP phosphoribosyltransferase - Prom 614264 - 614323 2.9 + Prom 614490 - 614549 5.3 540 286 Op 1 2/0.602 + CDS 614607 - 615431 820 ## COG0451 Nucleoside-diphosphate-sugar epimerases 541 286 Op 2 . + CDS 615473 - 616402 845 ## COG0583 Transcriptional regulator + Term 616489 - 616528 4.3 - Term 616480 - 616513 -0.4 542 287 Tu 1 . - CDS 616536 - 616745 94 ## gi|291085183|ref|ZP_06570969.1| conserved hypothetical protein + Prom 616410 - 616469 4.8 543 288 Tu 1 . + CDS 616672 - 618033 1825 ## COG0531 Amino acid transporters + Term 618058 - 618086 -0.1 - Term 618046 - 618074 -0.1 544 289 Tu 1 . - CDS 618093 - 619517 1465 ## COG2925 Exonuclease I + Prom 619835 - 619894 6.3 545 290 Op 1 16/0.000 + CDS 619918 - 622191 1665 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 546 290 Op 2 3/0.500 + CDS 622206 - 622784 352 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 547 290 Op 3 1/0.738 + CDS 622781 - 623548 821 ## COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) + Term 623580 - 623625 9.1 + Prom 623599 - 623658 2.6 548 291 Tu 1 . + CDS 623687 - 624853 1105 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Prom 624893 - 624952 7.2 549 292 Op 1 4/0.402 + CDS 624978 - 625445 440 ## COG3449 DNA gyrase inhibitor 550 292 Op 2 2/0.602 + CDS 625532 - 626590 856 ## COG1289 Predicted membrane protein + Prom 626599 - 626658 2.8 551 293 Tu 1 . + CDS 626829 - 627164 521 ## COG2926 Uncharacterized protein conserved in bacteria + Term 627181 - 627215 7.4 552 294 Op 1 1/0.738 - CDS 627204 - 628070 599 ## COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase 553 294 Op 2 1/0.738 - CDS 628163 - 629362 968 ## COG0282 Acetate kinase 554 294 Op 3 4/0.402 - CDS 629362 - 629814 278 ## COG4917 Ethanolamine utilization protein 555 294 Op 4 2/0.602 - CDS 629819 - 630169 320 ## COG4810 Ethanolamine utilization protein 556 294 Op 5 2/0.602 - CDS 630169 - 630723 581 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 557 294 Op 6 1/0.738 - CDS 630726 - 632081 906 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 558 294 Op 7 6/0.128 - CDS 632078 - 633190 657 ## COG1454 Alcohol dehydrogenase, class IV 559 294 Op 8 2/0.602 - CDS 633201 - 634586 1095 ## COG1012 NAD-dependent aldehyde dehydrogenases 560 294 Op 9 2/0.602 - CDS 634583 - 635590 732 ## COG2096 Uncharacterized conserved protein 561 294 Op 10 . - CDS 635599 - 635874 325 ## COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein 562 294 Op 11 . - CDS 635878 - 636369 334 ## CKO_00788 hypothetical protein 563 294 Op 12 2/0.602 - CDS 636366 - 636998 432 ## COG4869 Propanediol utilization protein 564 294 Op 13 5/0.226 - CDS 636998 - 637462 204 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 565 294 Op 14 . - CDS 637487 - 637762 350 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein 566 294 Op 15 . - CDS 637782 - 638132 156 ## SSON_2064 putative propanediol utilization diol dehydratase reactivation protein 567 294 Op 16 . - CDS 638122 - 639954 1532 ## CKO_00793 hypothetical protein 568 294 Op 17 1/0.738 - CDS 639970 - 640488 564 ## COG4910 Propanediol dehydratase, small subunit 569 294 Op 18 . - CDS 640503 - 641177 845 ## COG4909 Propanediol dehydratase, large subunit 570 294 Op 19 2/0.602 - CDS 641188 - 642852 1779 ## COG4909 Propanediol dehydratase, large subunit 571 294 Op 20 4/0.402 - CDS 642871 - 643683 911 ## COG4816 Ethanolamine utilization protein 572 294 Op 21 . - CDS 643683 - 643964 321 ## COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein - Prom 644083 - 644142 5.6 + Prom 644379 - 644438 3.3 573 295 Tu 1 . + CDS 644489 - 645298 635 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 645365 - 645409 8.2 + Prom 645418 - 645477 3.4 574 296 Tu 1 . + CDS 645502 - 646413 489 ## COG4936 Predicted sensor domain 575 297 Op 1 3/0.500 + CDS 646987 - 648366 1064 ## COG1797 Cobyrinic acid a,c-diamide synthase 576 297 Op 2 2/0.602 + CDS 648363 - 649322 938 ## COG1270 Cobalamin biosynthesis protein CobD/CbiB 577 297 Op 3 5/0.226 + CDS 649333 - 649965 747 ## COG2082 Precorrin isomerase 578 297 Op 4 6/0.128 + CDS 649962 - 651098 1247 ## COG1903 Cobalamin biosynthesis protein CbiD 579 297 Op 5 2/0.602 + CDS 651092 - 651697 518 ## COG2241 Precorrin-6B methylase 1 580 297 Op 6 5/0.226 + CDS 651726 - 652256 507 ## COG2242 Precorrin-6B methylase 2 581 297 Op 7 12/0.017 + CDS 652249 - 653022 1014 ## COG2875 Precorrin-4 methylase 582 297 Op 8 6/0.128 + CDS 653003 - 654058 1127 ## COG2073 Cobalamin biosynthesis protein CbiG 583 297 Op 9 4/0.402 + CDS 654058 - 654783 888 ## COG1010 Precorrin-3B methylase 584 297 Op 10 1/0.738 + CDS 654780 - 655565 643 ## COG2099 Precorrin-6x reductase 585 297 Op 11 2/0.602 + CDS 655576 - 656370 933 ## COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase 586 297 Op 12 . + CDS 656367 - 657080 710 ## COG2243 Precorrin-2 methylase 587 297 Op 13 4/0.402 + CDS 657077 - 657814 838 ## COG0310 ABC-type Co2+ transport system, permease component 588 297 Op 14 8/0.048 + CDS 657817 - 658098 405 ## COG1930 ABC-type cobalt transport system, periplasmic component 589 297 Op 15 34/0.000 + CDS 658085 - 658762 759 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 590 297 Op 16 2/0.602 + CDS 658771 - 659586 336 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 591 297 Op 17 4/0.402 + CDS 659583 - 661103 1768 ## COG1492 Cobyric acid synthase 592 297 Op 18 8/0.048 + CDS 661103 - 661645 459 ## COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 593 297 Op 19 11/0.025 + CDS 661642 - 662385 713 ## COG0368 Cobalamin-5-phosphate synthase 594 297 Op 20 4/0.402 + CDS 662464 - 663474 983 ## COG2038 NaMN:DMB phosphoribosyltransferase + Term 663494 - 663521 -0.1 + Prom 663510 - 663569 6.9 595 298 Tu 1 . + CDS 663602 - 664531 859 ## COG1376 Uncharacterized protein conserved in bacteria + Term 664544 - 664583 1.2 - Term 664335 - 664367 -0.8 596 299 Op 1 17/0.000 - CDS 664557 - 665240 246 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 597 299 Op 2 21/0.000 - CDS 665251 - 666939 1696 ## COG1178 ABC-type Fe3+ transport system, permease component 598 299 Op 3 . - CDS 666923 - 667960 1283 ## COG1840 ABC-type Fe3+ transport system, periplasmic component - Prom 668027 - 668086 6.4 + Prom 668740 - 668799 3.4 599 300 Tu 1 . + CDS 668917 - 673533 4011 ## ESA_00987 hypothetical protein + Term 673568 - 673604 6.5 600 301 Tu 1 . - CDS 674208 - 674903 154 ## Entcl_0627 hypothetical protein - Prom 674938 - 674997 5.5 + Prom 674879 - 674938 9.9 601 302 Op 1 6/0.128 + CDS 675182 - 675670 316 ## COG3516 Uncharacterized protein conserved in bacteria 602 302 Op 2 . + CDS 675667 - 677148 515 ## COG3517 Uncharacterized protein conserved in bacteria 603 302 Op 3 . + CDS 677178 - 677660 423 ## EC55989_3296 hypothetical protein + Term 677669 - 677703 4.3 604 302 Op 4 . + CDS 677709 - 678131 213 ## Rahaq_4920 gpW/GP25 family protein 605 302 Op 5 9/0.036 + CDS 678124 - 679923 628 ## COG3519 Uncharacterized protein conserved in bacteria 606 302 Op 6 . + CDS 679914 - 680852 601 ## COG3520 Uncharacterized protein conserved in bacteria 607 302 Op 7 . + CDS 680863 - 682800 1255 ## COG3501 Uncharacterized protein conserved in bacteria 608 302 Op 8 . + CDS 682810 - 683259 306 ## EC55989_3291 hypothetical protein 609 302 Op 9 . + CDS 683259 - 683558 160 ## COG4104 Uncharacterized conserved protein 610 302 Op 10 . + CDS 683565 - 684632 555 ## COG3515 Uncharacterized protein conserved in bacteria 611 302 Op 11 . + CDS 684629 - 685258 581 ## Rahaq_4927 type VI secretion lipoprotein, VC_A0113 family 612 302 Op 12 . + CDS 685262 - 686626 509 ## COG3522 Uncharacterized protein conserved in bacteria 613 302 Op 13 . + CDS 686626 - 687243 288 ## Rahaq_4929 type IV / VI secretion system, DotU 614 302 Op 14 . + CDS 687249 - 690674 1363 ## COG3523 Uncharacterized protein conserved in bacteria 615 302 Op 15 . + CDS 690693 - 693203 1207 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 616 302 Op 16 . + CDS 693292 - 694050 89 ## PSPPH_3978 hypothetical protein + Term 694102 - 694145 1.1 + Prom 694089 - 694148 4.9 617 303 Tu 1 . + CDS 694250 - 694777 345 ## COG3539 P pilus assembly protein, pilin FimA + Prom 694896 - 694955 4.2 618 304 Op 1 10/0.031 + CDS 695156 - 695563 152 ## COG3121 P pilus assembly protein, chaperone PapD 619 304 Op 2 . + CDS 695662 - 698220 567 ## COG3188 P pilus assembly protein, porin PapC + Prom 698247 - 698306 5.5 620 305 Op 1 . + CDS 698517 - 698738 99 ## gi|283832640|ref|ZP_06352381.1| S-fimbrial adhesin protein SfaS 621 305 Op 2 . + CDS 698746 - 699258 152 ## COG3539 P pilus assembly protein, pilin FimA + Prom 699273 - 699332 4.8 622 306 Tu 1 . + CDS 699400 - 700233 49 ## KP1_0601 putative fimbrial adhesin precursor + Term 700405 - 700436 0.0 - Term 700393 - 700424 0.0 623 307 Tu 1 . - CDS 700509 - 701975 955 ## COG4690 Dipeptidase - Prom 702034 - 702093 4.6 - TRNA 702790 - 702865 87.1 # Asn GTT 0 0 - Term 702820 - 702858 -0.8 624 308 Tu 1 . - CDS 702965 - 703762 601 ## COG3228 Uncharacterized protein conserved in bacteria - Prom 703886 - 703945 80.3 + TRNA 703856 - 703945 72.1 # Ser CGA 0 0 - Term 704062 - 704095 6.1 625 309 Tu 1 . - CDS 704115 - 705290 1370 ## COG3203 Outer membrane protein (porin) - Prom 705393 - 705452 7.8 + Prom 705591 - 705650 10.2 626 310 Op 1 4/0.402 + CDS 705731 - 706423 537 ## COG1418 Predicted HD superfamily hydrolase 627 310 Op 2 6/0.128 + CDS 706500 - 707930 926 ## COG0270 Site-specific DNA methylase 628 310 Op 3 . + CDS 707911 - 708378 396 ## COG3727 DNA G:T-mismatch repair endonuclease 629 311 Tu 1 . - CDS 708370 - 709290 958 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 709316 - 709375 5.9 630 312 Op 1 . + CDS 709235 - 709390 59 ## 631 312 Op 2 3/0.500 + CDS 709469 - 710380 886 ## COG2354 Uncharacterized protein conserved in bacteria 632 312 Op 3 . + CDS 710458 - 710640 217 ## COG5475 Uncharacterized small protein + Term 710742 - 710786 1.6 - Term 710609 - 710645 1.0 633 313 Tu 1 . - CDS 710846 - 711073 308 ## CKO_00990 hypothetical protein - Prom 711132 - 711191 5.2 + Prom 711007 - 711066 2.3 634 314 Tu 1 . + CDS 711236 - 711424 299 ## SG1072 hypothetical protein + Term 711444 - 711487 12.1 635 315 Tu 1 . - CDS 711479 - 712102 323 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 712256 - 712315 4.3 636 316 Op 1 17/0.000 - CDS 712390 - 713175 822 ## COG1684 Flagellar biosynthesis pathway, component FliR 637 316 Op 2 16/0.000 - CDS 713184 - 713453 293 ## COG1987 Flagellar biosynthesis pathway, component FliQ 638 316 Op 3 6/0.128 - CDS 713463 - 714200 740 ## COG1338 Flagellar biosynthesis pathway, component FliP 639 316 Op 4 6/0.128 - CDS 714200 - 714574 415 ## COG3190 Flagellar biogenesis protein 640 316 Op 5 20/0.000 - CDS 714577 - 714990 665 ## COG1886 Flagellar motor switch/type III secretory pathway protein 641 316 Op 6 13/0.013 - CDS 714987 - 715991 1016 ## COG1868 Flagellar motor switch protein 642 316 Op 7 7/0.082 - CDS 715996 - 716463 391 ## COG1580 Flagellar basal body-associated protein - Prom 716496 - 716555 2.5 643 317 Op 1 8/0.048 - CDS 716568 - 717782 1229 ## COG3144 Flagellar hook-length control protein 644 317 Op 2 12/0.017 - CDS 717779 - 718222 486 ## COG2882 Flagellar biosynthesis chaperone 645 317 Op 3 13/0.013 - CDS 718244 - 719614 1554 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase 646 317 Op 4 15/0.010 - CDS 719614 - 720321 896 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 647 317 Op 5 19/0.000 - CDS 720314 - 721312 1321 ## COG1536 Flagellar motor switch protein 648 317 Op 6 . - CDS 721305 - 722978 1587 ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein - Prom 723132 - 723191 3.6 + Prom 723091 - 723150 3.4 649 318 Tu 1 . + CDS 723195 - 723509 360 ## COG1677 Flagellar hook-basal body protein + Term 723526 - 723574 7.3 650 319 Op 1 10/0.031 - CDS 723563 - 723796 315 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 651 319 Op 2 . - CDS 723793 - 724998 1428 ## COG2391 Predicted transporter component - Prom 725238 - 725297 3.8 + Prom 724961 - 725020 3.0 652 320 Tu 1 . + CDS 725184 - 725597 528 ## CKO_01010 hypothetical protein + Term 725602 - 725645 0.5 653 321 Op 1 . - CDS 725638 - 727125 1547 ## COG0366 Glycosidases 654 321 Op 2 . - CDS 727194 - 727565 460 ## STM1962 flagellar biosynthesis protein FliT 655 321 Op 3 15/0.010 - CDS 727565 - 727972 558 ## COG1516 Flagellin-specific chaperone FliS 656 321 Op 4 . - CDS 727988 - 729394 1441 ## COG1345 Flagellar capping protein - Prom 729609 - 729668 2.4 657 322 Tu 1 . + CDS 729650 - 731131 1296 ## COG1344 Flagellin and related hook-associated proteins + Term 731151 - 731178 1.5 + Prom 731205 - 731264 3.8 658 323 Op 1 . + CDS 731294 - 732013 725 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 659 323 Op 2 . + CDS 732070 - 732621 428 ## CKO_01024 flagella biosynthesis protein FliZ + Prom 732761 - 732820 2.8 660 324 Tu 1 2/0.602 + CDS 732847 - 733647 1290 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 733659 - 733704 8.2 + Prom 733666 - 733725 9.6 661 325 Op 1 1/0.738 + CDS 733755 - 734741 1235 ## COG2515 1-aminocyclopropane-1-carboxylate deaminase 662 325 Op 2 34/0.000 + CDS 734763 - 735431 842 ## COG0765 ABC-type amino acid transport system, permease component 663 325 Op 3 5/0.226 + CDS 735428 - 736180 276 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 + Prom 736292 - 736351 6.3 664 326 Tu 1 . + CDS 736412 - 737134 326 ## COG2771 DNA-binding HTH domain-containing proteins + Term 737167 - 737205 6.2 - Term 737155 - 737193 6.2 665 327 Tu 1 . - CDS 737201 - 737425 311 ## ROD_19701 hypothetical protein - Prom 737475 - 737534 4.0 + Prom 737783 - 737842 5.5 666 328 Op 1 3/0.500 + CDS 737885 - 738541 521 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 667 328 Op 2 9/0.036 + CDS 738538 - 740370 1884 ## COG0322 Nuclease subunit of the excinuclease complex 668 328 Op 3 . + CDS 740426 - 740974 264 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + TRNA 741126 - 741201 93.7 # Gly GCC 0 0 + TRNA 741254 - 741327 53.9 # Cys GCA 0 0 + TRNA 741338 - 741424 73.2 # Leu TAA 0 0 669 329 Tu 1 . - CDS 741552 - 741893 151 ## gi|283832689|ref|ZP_06352430.1| hypothetical protein CIT292_06650 - Prom 741918 - 741977 8.2 + Prom 742244 - 742303 2.1 670 330 Op 1 . + CDS 742323 - 743303 1072 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 671 330 Op 2 . + CDS 743281 - 743637 227 ## Shew185_3073 mercuric transport protein MerT 672 330 Op 3 . + CDS 743634 - 743915 216 ## Sbal_3058 heavy metal transport/detoxification protein + Prom 744034 - 744093 3.5 673 331 Tu 1 . + CDS 744124 - 744789 847 ## COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA + Term 744796 - 744821 -0.5 - Term 744784 - 744809 -0.5 674 332 Tu 1 . - CDS 744816 - 745994 1226 ## COG0814 Amino acid permeases - Prom 746066 - 746125 5.0 + Prom 746105 - 746164 5.7 675 333 Tu 1 . + CDS 746255 - 746494 287 ## CKO_01041 hypothetical protein - Term 746486 - 746536 12.0 676 334 Tu 1 . - CDS 746540 - 747037 561 ## COG1528 Ferritin-like protein - Prom 747071 - 747130 13.5 - Term 747190 - 747223 3.4 677 335 Tu 1 . - CDS 747231 - 747566 314 ## SG1119 lipoprotein - Prom 747717 - 747776 4.3 + Prom 747697 - 747756 4.9 678 336 Tu 1 . + CDS 747832 - 748470 783 ## COG0698 Ribose 5-phosphate isomerase RpiB + Term 748478 - 748520 7.4 679 337 Tu 1 . - CDS 748504 - 749925 1540 ## COG0477 Permeases of the major facilitator superfamily - Prom 749977 - 750036 2.8 + Prom 749921 - 749980 2.5 680 338 Tu 1 . + CDS 750055 - 750306 328 ## ECH74115_2639 hypothetical protein 681 339 Tu 1 . - CDS 750444 - 750947 517 ## COG1528 Ferritin-like protein - Prom 751105 - 751164 3.9 + Prom 751244 - 751303 5.1 682 340 Tu 1 . + CDS 751501 - 752058 650 ## COG0693 Putative intracellular protease/amidase + Term 752060 - 752107 8.7 + Prom 752270 - 752329 3.7 683 341 Op 1 16/0.000 + CDS 752374 - 753363 1332 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 753439 - 753468 0.3 684 341 Op 2 21/0.000 + CDS 753496 - 755010 1672 ## COG1129 ABC-type sugar transport system, ATPase component 685 341 Op 3 1/0.738 + CDS 755025 - 756011 1039 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components + Term 756050 - 756087 8.1 + Prom 756064 - 756123 3.9 686 342 Op 1 8/0.048 + CDS 756187 - 756990 420 ## COG1877 Trehalose-6-phosphatase 687 342 Op 2 . + CDS 756965 - 758386 1182 ## COG0380 Trehalose-6-phosphate synthase + Term 758529 - 758568 -0.4 - Term 758330 - 758383 -0.2 688 343 Tu 1 . - CDS 758404 - 758832 477 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 759038 - 759097 12.8 + Prom 759415 - 759474 5.1 689 344 Op 1 . + CDS 759626 - 759967 265 ## SG1126 transcriptional activator FlhD 690 344 Op 2 . + CDS 759970 - 760548 445 ## CKO_01057 transcriptional activator FlhC + Term 760575 - 760612 7.1 + Prom 760575 - 760634 1.6 691 345 Op 1 19/0.000 + CDS 760673 - 761560 959 ## COG1291 Flagellar motor component 692 345 Op 2 5/0.226 + CDS 761557 - 762486 677 ## COG1360 Flagellar motor protein 693 345 Op 3 20/0.000 + CDS 762497 - 764539 2032 ## COG0643 Chemotaxis protein histidine kinase and related kinases 694 345 Op 4 . + CDS 764561 - 765064 713 ## COG0835 Chemotaxis signal transduction protein + Term 765108 - 765145 3.3 - Term 765066 - 765116 9.3 695 346 Tu 1 . - CDS 765144 - 766403 1502 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 766637 - 766696 5.4 + Prom 766710 - 766769 1.6 696 347 Op 1 13/0.013 + CDS 766808 - 768463 1595 ## COG0840 Methyl-accepting chemotaxis protein 697 347 Op 2 9/0.036 + CDS 768507 - 770108 1355 ## COG0840 Methyl-accepting chemotaxis protein 698 347 Op 3 13/0.013 + CDS 770128 - 771000 592 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 699 347 Op 4 18/0.000 + CDS 770997 - 772046 941 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 700 347 Op 5 8/0.048 + CDS 772064 - 772453 642 ## COG0784 FOG: CheY-like receiver 701 347 Op 6 4/0.402 + CDS 772464 - 773108 885 ## COG3143 Chemotaxis protein + Term 773109 - 773170 8.1 + Prom 773182 - 773241 2.7 702 348 Op 1 13/0.013 + CDS 773267 - 774418 1012 ## COG1377 Flagellar biosynthesis pathway, component FlhB 703 348 Op 2 . + CDS 774411 - 776489 2246 ## COG1298 Flagellar biosynthesis pathway, component FlhA 704 348 Op 3 . + CDS 776489 - 776881 342 ## ROD_19231 flagellar protein FlhE + Term 776897 - 776934 6.1 + Prom 776924 - 776983 3.8 705 349 Op 1 . + CDS 777144 - 778730 1640 ## COG2211 Na+/melibiose symporter and related transporters 706 349 Op 2 . + CDS 778731 - 779870 1333 ## COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins + Term 779874 - 779903 0.3 - Term 779643 - 779678 -0.3 707 350 Tu 1 . - CDS 779842 - 781779 1708 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 781981 - 782040 4.8 - Term 782010 - 782049 5.8 708 351 Tu 1 . - CDS 782066 - 783799 2258 ## COG0018 Arginyl-tRNA synthetase - Prom 783837 - 783896 3.9 + Prom 783953 - 784012 3.5 709 352 Op 1 3/0.500 + CDS 784038 - 784604 408 ## COG3102 Uncharacterized protein conserved in bacteria 710 352 Op 2 . + CDS 784607 - 785353 401 ## COG3142 Uncharacterized protein involved in copper resistance + Term 785365 - 785400 2.0 711 353 Op 1 17/0.000 - CDS 785585 - 786553 1060 ## COG0500 SAM-dependent methyltransferases 712 353 Op 2 2/0.602 - CDS 786550 - 787293 878 ## COG0500 SAM-dependent methyltransferases 713 353 Op 3 2/0.602 - CDS 787334 - 787729 379 ## COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily 714 353 Op 4 1/0.738 - CDS 787782 - 788600 663 ## COG1801 Uncharacterized conserved protein 715 353 Op 5 . - CDS 788597 - 789163 576 ## COG1335 Amidases related to nicotinamidase - Prom 789246 - 789305 5.8 + Prom 789278 - 789337 5.3 716 354 Op 1 5/0.226 + CDS 789433 - 791205 2164 ## COG0173 Aspartyl-tRNA synthetase 717 354 Op 2 7/0.082 + CDS 791207 - 791650 411 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 718 354 Op 3 8/0.048 + CDS 791679 - 792422 1070 ## COG0217 Uncharacterized conserved protein 719 354 Op 4 14/0.011 + CDS 792457 - 792978 541 ## COG0817 Holliday junction resolvasome, endonuclease subunit + Term 792987 - 793022 5.1 720 355 Op 1 29/0.000 + CDS 793059 - 793670 698 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 721 355 Op 2 . + CDS 793679 - 794689 1112 ## COG2255 Holliday junction resolvasome, helicase subunit + Term 794705 - 794735 -0.5 722 356 Op 1 42/0.000 - CDS 794768 - 795553 871 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 723 356 Op 2 . - CDS 795550 - 796305 222 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 796333 - 796392 6.5 + Prom 796289 - 796348 5.6 724 357 Op 1 . + CDS 796369 - 797328 482 ## COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin 725 357 Op 2 1/0.738 + CDS 797344 - 798663 1385 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 798673 - 798721 10.0 + Prom 798688 - 798747 7.1 726 358 Tu 1 . + CDS 798783 - 799754 782 ## COG1560 Lauroyl/myristoyl acyltransferase + Term 799760 - 799791 4.1 - Term 799738 - 799789 10.6 727 359 Op 1 . - CDS 799801 - 801243 1575 ## COG0469 Pyruvate kinase - Prom 801276 - 801335 4.7 728 359 Op 2 . - CDS 801352 - 802245 716 ## COG1737 Transcriptional regulators - Prom 802293 - 802352 4.3 + Prom 802472 - 802531 4.5 729 360 Tu 1 . + CDS 802590 - 804065 1813 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Term 804145 - 804183 6.0 + Prom 804133 - 804192 5.8 730 361 Op 1 8/0.048 + CDS 804300 - 806111 1785 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 731 361 Op 2 . + CDS 806146 - 806787 1016 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 732 362 Tu 1 . - CDS 806889 - 808067 1082 ## COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) - Prom 808150 - 808209 4.4 + Prom 808112 - 808171 7.2 733 363 Tu 1 . + CDS 808200 - 808490 385 ## COG3141 Uncharacterized protein conserved in bacteria 734 364 Op 1 . + CDS 808612 - 808965 381 ## EcHS_A1939 hypothetical protein 735 364 Op 2 4/0.402 + CDS 809060 - 809719 801 ## COG2979 Uncharacterized protein conserved in bacteria 736 364 Op 3 . + CDS 809806 - 811881 2156 ## COG1770 Protease II - Term 811593 - 811640 -0.9 737 365 Op 1 4/0.402 - CDS 811863 - 812525 411 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 738 365 Op 2 . - CDS 812548 - 813204 217 ## COG0388 Predicted amidohydrolase - Prom 813235 - 813294 9.1 739 366 Tu 1 . - CDS 813310 - 813540 285 ## EFER_1231 DNA polymerase III subunit theta - Prom 813648 - 813707 2.8 + Prom 813596 - 813655 4.0 740 367 Op 1 8/0.048 + CDS 813684 - 814058 311 ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC 741 367 Op 2 . + CDS 814062 - 814931 795 ## COG1276 Putative copper export protein 742 367 Op 3 . + CDS 814952 - 815290 336 ## ROD_18781 hypothetical protein + Term 815327 - 815367 6.2 + Prom 815782 - 815841 4.1 743 368 Tu 1 . + CDS 815866 - 816132 196 ## gi|291085241|ref|ZP_06570989.1| conserved hypothetical protein + Term 816153 - 816178 -0.5 + Prom 816250 - 816309 3.6 744 369 Tu 1 . + CDS 816405 - 817046 477 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 745 370 Op 1 . - CDS 817047 - 817262 153 ## EFER_1237 hypothetical protein - Term 817302 - 817330 1.0 746 370 Op 2 . - CDS 817342 - 817578 318 ## SeSA_A1994 hypothetical protein 747 371 Tu 1 . - CDS 817679 - 819067 1129 ## COG0144 tRNA and rRNA cytosine-C5-methylases - Term 819132 - 819169 8.5 748 372 Op 1 11/0.025 - CDS 819180 - 821819 2854 ## COG3008 Paraquat-inducible protein B 749 372 Op 2 . - CDS 821782 - 822939 701 ## COG2995 Uncharacterized paraquat-inducible protein A - Prom 823140 - 823199 5.0 + Prom 822977 - 823036 5.4 750 373 Op 1 4/0.402 + CDS 823194 - 823691 296 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 751 373 Op 2 7/0.082 + CDS 823788 - 824474 604 ## COG3109 Activator of osmoprotectant transporter ProP 752 373 Op 3 5/0.226 + CDS 824494 - 826542 2191 ## COG0793 Periplasmic protease + Term 826550 - 826585 5.1 + Prom 826564 - 826623 7.5 753 374 Tu 1 . + CDS 826735 - 827616 904 ## COG0501 Zn-dependent protease with chaperone function + Term 827637 - 827667 3.0 - Term 827624 - 827654 3.0 754 375 Tu 1 . - CDS 827660 - 829033 1039 ## COG0477 Permeases of the major facilitator superfamily - Prom 829148 - 829207 8.2 + Prom 829111 - 829170 7.1 755 376 Tu 1 . + CDS 829209 - 830000 981 ## COG1414 Transcriptional regulator + Term 830028 - 830062 5.3 756 377 Tu 1 . - CDS 830115 - 830354 183 ## CKO_01148 hypothetical protein - Prom 830470 - 830529 4.8 757 378 Tu 1 . + CDS 830737 - 831021 209 ## EFER_1250 hypothetical protein + Prom 831701 - 831760 3.6 758 379 Tu 1 . + CDS 831832 - 832041 324 ## COG1278 Cold shock proteins + Term 832091 - 832121 2.1 + Prom 832082 - 832141 4.2 759 380 Op 1 2/0.602 + CDS 832261 - 834006 1373 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 760 380 Op 2 . + CDS 834070 - 834879 690 ## COG0500 SAM-dependent methyltransferases - Term 834756 - 834799 -0.4 761 381 Tu 1 . - CDS 834876 - 835442 584 ## COG1971 Predicted membrane protein 762 382 Tu 1 4/0.402 - CDS 835875 - 836333 452 ## COG4811 Predicted membrane protein - Term 836349 - 836378 3.5 763 383 Op 1 13/0.013 - CDS 836394 - 837245 1091 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 764 383 Op 2 13/0.013 - CDS 837258 - 838058 1019 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 765 383 Op 3 . - CDS 838117 - 839079 1209 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 839211 - 839270 7.9 + Prom 839428 - 839487 5.7 766 384 Tu 1 . + CDS 839539 - 841098 1967 ## COG1253 Hemolysins and related proteins containing CBS domains 767 385 Tu 1 . - CDS 841105 - 842568 1076 ## COG2200 FOG: EAL domain - Prom 842750 - 842809 1.7 - Term 842789 - 842827 9.3 768 386 Tu 1 . - CDS 842837 - 844201 1503 ## COG1760 L-serine deaminase - Prom 844236 - 844295 4.8 - Term 844295 - 844332 -0.0 769 387 Op 1 6/0.128 - CDS 844385 - 844963 494 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 770 387 Op 2 . - CDS 844967 - 846328 983 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 846386 - 846445 5.2 + Prom 846322 - 846381 5.6 771 388 Tu 1 . + CDS 846412 - 846591 327 ## COG3140 Uncharacterized protein conserved in bacteria + Term 846748 - 846798 0.1 772 389 Tu 1 . - CDS 846598 - 846942 520 ## COG0251 Putative translation initiation inhibitor, yjgF family + Prom 846921 - 846980 3.0 773 390 Tu 1 . + CDS 847084 - 848994 1853 ## COG1199 Rad3-related DNA helicases 774 391 Op 1 7/0.082 + CDS 849173 - 849748 591 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 775 391 Op 2 7/0.082 + CDS 849836 - 850420 743 ## COG3065 Starvation-inducible outer membrane lipoprotein + Term 850446 - 850476 1.0 + Prom 850479 - 850538 3.4 776 392 Op 1 8/0.048 + CDS 850559 - 852310 1882 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 852329 - 852366 4.9 777 392 Op 2 . + CDS 852395 - 853510 1292 ## COG0349 Ribonuclease D + Term 853597 - 853636 -0.1 778 393 Tu 1 11/0.025 - CDS 853558 - 854523 602 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Term 854533 - 854573 6.2 779 394 Op 1 3/0.500 - CDS 854595 - 855719 1346 ## COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 780 394 Op 2 3/0.500 - CDS 855765 - 857366 1634 ## COG1292 Choline-glycine betaine transporter - Prom 857522 - 857581 5.0 - Term 857568 - 857602 6.7 781 395 Tu 1 . - CDS 857622 - 858704 1218 ## COG0473 Isocitrate/isopropylmalate dehydrogenase - Prom 858740 - 858799 2.5 + Prom 858708 - 858767 3.9 782 396 Tu 1 . + CDS 858787 - 859725 814 ## COG0583 Transcriptional regulator + Term 859762 - 859789 0.1 - Term 859743 - 859786 2.7 783 397 Op 1 22/0.000 - CDS 859811 - 860077 332 ## COG0851 Septum formation topological specificity factor 784 397 Op 2 22/0.000 - CDS 860081 - 860893 933 ## COG2894 Septum formation inhibitor-activating ATPase 785 397 Op 3 . - CDS 860917 - 861624 445 ## COG0850 Septum formation inhibitor - Prom 861755 - 861814 4.9 + Prom 861533 - 861592 2.8 786 398 Op 1 2/0.602 + CDS 861751 - 862044 260 ## COG3100 Uncharacterized protein conserved in bacteria 787 398 Op 2 1/0.738 + CDS 862114 - 862773 835 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) + Prom 862782 - 862841 3.7 788 398 Op 3 . + CDS 862866 - 863312 524 ## COG2983 Uncharacterized conserved protein - Term 863283 - 863328 1.2 789 399 Tu 1 . - CDS 863342 - 863683 373 ## COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance - Prom 863715 - 863774 8.0 - Term 863756 - 863791 4.2 790 400 Tu 1 . - CDS 863794 - 864324 441 ## COG1495 Disulfide bond formation protein DsbB - Prom 864365 - 864424 4.8 - Term 864427 - 864458 2.4 791 401 Tu 1 . - CDS 864459 - 866006 1617 ## COG3067 Na+/H+ antiporter - Prom 866051 - 866110 5.8 + Prom 866149 - 866208 4.0 792 402 Tu 1 . + CDS 866241 - 866960 768 ## COG2186 Transcriptional regulators + Term 867125 - 867156 0.0 793 403 Tu 1 . - CDS 868359 - 869891 1509 ## COG2719 Uncharacterized conserved protein - Prom 870138 - 870197 3.5 + Prom 870118 - 870177 4.9 794 404 Op 1 7/0.082 + CDS 870214 - 871512 1249 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 795 404 Op 2 . + CDS 871525 - 872595 869 ## COG0787 Alanine racemase 796 405 Op 1 1/0.738 - CDS 872701 - 874434 1798 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain - Prom 874471 - 874530 1.8 - Term 874464 - 874513 -0.3 797 405 Op 2 . - CDS 874532 - 875446 709 ## COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - Prom 875474 - 875533 3.4 + Prom 875210 - 875269 3.2 798 406 Tu 1 . + CDS 875419 - 876156 544 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - Term 876023 - 876068 -0.9 799 407 Tu 1 . - CDS 876168 - 876902 587 ## COG5581 Predicted glycosyltransferase - Prom 877100 - 877159 3.0 + Prom 876993 - 877052 5.1 800 408 Tu 1 . + CDS 877101 - 877355 316 ## COG2261 Predicted membrane protein + Term 877361 - 877390 3.5 - Term 877344 - 877381 8.5 801 409 Tu 1 1/0.738 - CDS 877400 - 879112 1806 ## COG1626 Neutral trehalase - Term 879234 - 879279 8.0 802 410 Op 1 2/0.602 - CDS 879285 - 880715 1272 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 803 410 Op 2 10/0.031 - CDS 880726 - 881358 672 ## COG2376 Dihydroxyacetone kinase 804 410 Op 3 . - CDS 881370 - 882440 1371 ## COG2376 Dihydroxyacetone kinase - Prom 882542 - 882601 3.2 - Term 882711 - 882741 4.3 805 411 Tu 1 . - CDS 882767 - 884041 1434 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 884244 - 884303 2.8 + Prom 884016 - 884075 4.5 806 412 Tu 1 . + CDS 884134 - 884298 83 ## gi|291085264|ref|ZP_06571001.1| hypothetical protein CIT292_06810 807 413 Op 1 . - CDS 884375 - 885055 442 ## COG0789 Predicted transcriptional regulators - Prom 885171 - 885230 5.2 808 413 Op 2 . - CDS 885330 - 886541 454 ## COG2200 FOG: EAL domain - Prom 886732 - 886791 11.0 + Prom 886717 - 886776 8.4 809 414 Tu 1 . + CDS 886859 - 887095 272 ## ECUMN_1449 hypothetical protein 810 415 Op 1 . + CDS 887210 - 887413 117 ## gi|283832836|ref|ZP_06352577.1| conserved hypothetical protein 811 415 Op 2 . + CDS 887449 - 887715 247 ## ECS88_1227 hypothetical protein + Term 887740 - 887779 -0.9 812 416 Tu 1 . - CDS 887611 - 887808 88 ## - Prom 887860 - 887919 5.4 + Prom 887725 - 887784 10.0 813 417 Op 1 . + CDS 887845 - 888138 97 ## ECS88_1228 hypothetical protein 814 417 Op 2 . + CDS 888092 - 888640 364 ## COG2771 DNA-binding HTH domain-containing proteins + Term 888678 - 888722 3.4 - Term 888665 - 888711 7.1 815 418 Tu 1 . - CDS 888716 - 888889 58 ## gi|291085267|ref|ZP_06571004.1| collagen alpha-1(XXIV) chain - Prom 888986 - 889045 4.7 + Prom 888816 - 888875 1.9 816 419 Tu 1 . + CDS 888906 - 890489 755 ## KPK_1305 hypothetical protein + Term 890585 - 890631 -0.7 817 420 Tu 1 . - CDS 890491 - 892287 1189 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 892444 - 892503 5.7 + Prom 892396 - 892455 5.3 818 421 Op 1 . + CDS 892655 - 893965 1078 ## COG0477 Permeases of the major facilitator superfamily 819 421 Op 2 . + CDS 893989 - 895101 1076 ## CJA_3415 hypothetical protein + Term 895163 - 895207 8.2 - Term 895158 - 895187 2.1 820 422 Tu 1 14/0.011 - CDS 895250 - 896344 1464 ## COG0012 Predicted GTPase, probable translation factor - Prom 896386 - 896445 2.6 821 423 Tu 1 . - CDS 896460 - 897044 557 ## COG0193 Peptidyl-tRNA hydrolase - Prom 897073 - 897132 5.2 + Prom 897209 - 897268 5.0 822 424 Tu 1 . + CDS 897320 - 897601 185 ## CKO_01260 hypothetical protein + Term 897635 - 897682 4.0 - Term 897681 - 897720 8.4 823 425 Tu 1 . - CDS 897724 - 899085 910 ## COG0527 Aspartokinases - Prom 899106 - 899165 2.3 + Prom 899443 - 899502 8.2 824 426 Op 1 4/0.402 + CDS 899705 - 901087 1480 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 825 426 Op 2 . + CDS 901103 - 902566 1929 ## COG0076 Glutamate decarboxylase and related PLP-dependent proteins + Term 902588 - 902621 4.5 - Term 902574 - 902609 4.1 826 427 Tu 1 . - CDS 902647 - 904302 1847 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 904384 - 904443 10.3 - Term 904410 - 904435 -0.5 827 428 Tu 1 . - CDS 904454 - 905401 957 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 905480 - 905539 2.0 - Term 905484 - 905535 1.0 828 429 Op 1 13/0.013 - CDS 905667 - 906515 623 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 829 429 Op 2 . - CDS 906515 - 907204 751 ## COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis - Prom 907293 - 907352 4.3 + Prom 907253 - 907312 3.5 830 430 Op 1 9/0.036 + CDS 907350 - 908606 1348 ## COG0373 Glutamyl-tRNA reductase 831 430 Op 2 32/0.000 + CDS 908648 - 909730 1248 ## COG0216 Protein chain release factor A 832 430 Op 3 6/0.128 + CDS 909730 - 910563 257 ## PROTEIN SUPPORTED gi|227996692|ref|ZP_04043706.1| (LSU ribosomal protein L3P)-glutamine N5-methyltransferase 833 430 Op 4 6/0.128 + CDS 910560 - 910952 347 ## COG3094 Uncharacterized protein conserved in bacteria 834 430 Op 5 8/0.048 + CDS 910956 - 911765 973 ## COG2912 Uncharacterized conserved protein 835 430 Op 6 . + CDS 911801 - 912655 1043 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase + Term 912666 - 912705 8.1 - Term 912648 - 912689 -0.5 836 431 Tu 1 . - CDS 912702 - 913415 254 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 913445 - 913504 4.9 837 432 Op 1 . + CDS 913455 - 914078 295 ## COG1309 Transcriptional regulator 838 432 Op 2 . + CDS 914107 - 915798 1053 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold + Term 916037 - 916070 -0.4 - Term 915797 - 915839 4.6 839 433 Tu 1 . - CDS 915854 - 916954 1070 ## COG0387 Ca2+/H+ antiporter - Prom 916981 - 917040 9.4 + Prom 917100 - 917159 8.3 840 434 Tu 1 . + CDS 917229 - 917459 325 ## COG4572 Putative cation transport regulator + Prom 917534 - 917593 3.4 841 435 Tu 1 . + CDS 917656 - 918351 547 ## COG3703 Uncharacterized protein involved in cation transport + Term 918517 - 918562 -0.9 842 436 Tu 1 . - CDS 918404 - 918649 177 ## CKO_01286 hypothetical protein - Prom 918775 - 918834 5.0 843 437 Tu 1 . - CDS 918912 - 919265 371 ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction - Prom 919422 - 919481 4.1 + Prom 919245 - 919304 3.7 844 438 Tu 1 . + CDS 919474 - 920859 1191 ## CKO_01295 hypothetical protein 845 439 Op 1 8/0.048 - CDS 920888 - 921538 864 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 846 439 Op 2 . - CDS 921531 - 923327 1635 ## COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - Prom 923414 - 923473 5.2 + Prom 923513 - 923572 2.1 847 440 Tu 1 . + CDS 923667 - 925058 1476 ## COG2223 Nitrate/nitrite transporter + Term 925206 - 925237 1.1 848 441 Op 1 13/0.013 + CDS 925574 - 929317 4422 ## COG5013 Nitrate reductase alpha subunit 849 441 Op 2 12/0.017 + CDS 929314 - 930852 1900 ## COG1140 Nitrate reductase beta subunit 850 441 Op 3 12/0.017 + CDS 930849 - 931559 967 ## COG2180 Nitrate reductase delta subunit 851 441 Op 4 . + CDS 931559 - 932236 937 ## COG2181 Nitrate reductase gamma subunit + Term 932253 - 932292 2.1 - TRNA 932827 - 932911 66.9 # Tyr GTA 0 0 + Prom 932870 - 932929 6.1 852 442 Tu 1 . + CDS 933123 - 933269 81 ## ECUMN_1528 hypothetical protein - TRNA 933124 - 933208 61.5 # Tyr GTA 0 0 853 443 Op 1 4/0.402 - CDS 933365 - 934207 807 ## COG0788 Formyltetrahydrofolate hydrolase 854 443 Op 2 . - CDS 934263 - 934718 202 ## PROTEIN SUPPORTED gi|90021194|ref|YP_527021.1| ribosomal protein L20 - Prom 934762 - 934821 3.9 + Prom 934530 - 934589 2.7 855 444 Op 1 4/0.402 + CDS 934830 - 935741 595 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily + Prom 935743 - 935802 4.2 856 444 Op 2 5/0.226 + CDS 935831 - 936844 572 ## COG0784 FOG: CheY-like receiver + Prom 936929 - 936988 4.1 857 445 Tu 1 . + CDS 937049 - 937957 919 ## COG1210 UDP-glucose pyrophosphorylase + Term 937979 - 938018 7.4 - Term 938044 - 938072 3.0 858 446 Tu 1 . - CDS 938095 - 938508 483 ## COG2916 DNA-binding protein H-NS - Prom 938545 - 938604 4.0 + Prom 938843 - 938902 4.3 859 447 Tu 1 . + CDS 939144 - 939761 275 ## COG1435 Thymidine kinase + Term 939948 - 939978 4.3 - Term 939931 - 939972 9.1 860 448 Tu 1 . - CDS 939999 - 942677 2823 ## COG1454 Alcohol dehydrogenase, class IV - Prom 942725 - 942784 2.8 + Prom 942957 - 943016 3.6 861 449 Tu 1 . + CDS 943165 - 943812 441 ## COG2095 Multiple antibiotic transporter + Term 943832 - 943863 2.4 862 450 Tu 1 . - CDS 944202 - 944600 60 ## + Prom 944409 - 944468 4.1 863 451 Op 1 21/0.000 + CDS 944590 - 946221 1829 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 946231 - 946267 5.6 + Prom 946255 - 946314 5.8 864 451 Op 2 49/0.000 + CDS 946454 - 947374 938 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 865 451 Op 3 44/0.000 + CDS 947392 - 948297 1117 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 866 451 Op 4 44/0.000 + CDS 948309 - 949322 589 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 867 451 Op 5 1/0.738 + CDS 949319 - 950323 864 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Term 950328 - 950363 5.8 868 451 Op 6 . + CDS 950371 - 951207 506 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 951211 - 951251 7.2 - Term 951205 - 951231 -1.0 869 452 Op 1 1/0.738 - CDS 951245 - 951574 524 ## COG3099 Uncharacterized protein conserved in bacteria 870 452 Op 2 . - CDS 951609 - 953069 1220 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 953098 - 953157 5.9 + Prom 953129 - 953188 6.1 871 453 Tu 1 . + CDS 953212 - 953385 158 ## ECIAI39_1585 hypothetical protein + Term 953394 - 953427 5.2 - Term 953381 - 953413 5.0 872 454 Tu 1 . - CDS 953437 - 953733 220 ## COG2350 Uncharacterized protein conserved in bacteria - Prom 953924 - 953983 3.4 + Prom 953803 - 953862 6.0 873 455 Tu 1 . + CDS 953958 - 954674 566 ## COG0810 Periplasmic protein TonB, links inner and outer membranes - Term 954664 - 954713 3.0 874 456 Tu 1 . - CDS 954762 - 955163 416 ## COG1607 Acyl-CoA hydrolase - Prom 955192 - 955251 1.7 - Term 955283 - 955320 7.1 875 457 Op 1 . - CDS 955328 - 955867 557 ## COG2917 Intracellular septation protein A - Term 955878 - 955909 2.3 876 457 Op 2 . - CDS 955922 - 956665 693 ## CKO_01332 hypothetical protein - Prom 956698 - 956757 4.6 877 458 Tu 1 . - CDS 956802 - 956960 70 ## - Prom 957063 - 957122 4.1 + Prom 956850 - 956909 4.9 878 459 Tu 1 . + CDS 957064 - 957702 704 ## COG3047 Outer membrane protein W + Term 957726 - 957759 4.0 + Prom 957743 - 957802 2.9 879 460 Tu 1 . + CDS 957834 - 958106 287 ## CKO_01334 hypothetical protein + Prom 958158 - 958217 2.6 880 461 Tu 1 . + CDS 958290 - 959762 1051 ## COG2199 FOG: GGDEF domain + Term 959765 - 959796 4.1 - Term 959753 - 959784 4.1 881 462 Op 1 37/0.000 - CDS 959795 - 960601 388 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc 882 462 Op 2 13/0.013 - CDS 960601 - 961794 1377 ## COG0133 Tryptophan synthase beta chain 883 462 Op 3 21/0.000 - CDS 961805 - 963163 1207 ## COG0134 Indole-3-glycerol phosphate synthase 884 462 Op 4 10/0.031 - CDS 963167 - 964762 1766 ## COG0547 Anthranilate phosphoribosyltransferase 885 462 Op 5 . - CDS 964762 - 966324 1579 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 966490 - 966549 5.4 + Prom 966470 - 966529 4.1 886 463 Op 1 6/0.128 + CDS 966587 - 967477 520 ## COG0613 Predicted metal-dependent phosphoesterases (PHP family) 887 463 Op 2 4/0.402 + CDS 967474 - 968094 771 ## COG0009 Putative translation factor (SUA5) + Term 968129 - 968157 0.1 888 464 Tu 1 . + CDS 968195 - 969070 1128 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 889 465 Op 1 5/0.226 - CDS 969154 - 969744 547 ## COG2109 ATP:corrinoid adenosyltransferase 890 465 Op 2 . - CDS 969741 - 970502 696 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 970546 - 970605 1.9 + Prom 970635 - 970694 2.3 891 466 Tu 1 . + CDS 970724 - 971770 1107 ## COG0616 Periplasmic serine proteases (ClpP class) - Term 971788 - 971849 4.7 892 467 Tu 1 . - CDS 971879 - 972130 409 ## CKO_01350 hypothetical protein - Prom 972263 - 972322 4.0 + Prom 972234 - 972293 4.4 893 468 Tu 1 . + CDS 972529 - 975126 2637 ## COG0550 Topoisomerase IA + Term 975149 - 975190 4.8 + Prom 975191 - 975250 8.2 894 469 Tu 1 . + CDS 975335 - 976309 1067 ## COG0583 Transcriptional regulator + Prom 976506 - 976565 5.6 895 470 Op 1 . + CDS 976675 - 976764 84 ## 896 470 Op 2 . + CDS 976768 - 976935 149 ## gi|283832917|ref|ZP_06352658.1| conserved hypothetical protein + Prom 977133 - 977192 5.3 897 471 Tu 1 . + CDS 977242 - 979917 2679 ## COG1048 Aconitase A + Term 979928 - 979956 1.0 - Term 979909 - 979950 5.1 898 472 Tu 1 . - CDS 979968 - 980558 777 ## COG0807 GTP cyclohydrolase II - Prom 980618 - 980677 2.7 + Prom 980678 - 980737 3.9 899 473 Tu 1 . + CDS 980760 - 981530 536 ## COG0671 Membrane-associated phospholipid phosphatase + Term 981536 - 981584 1.4 + Prom 981550 - 981609 4.8 900 474 Op 1 8/0.048 + CDS 981674 - 981982 201 ## PROTEIN SUPPORTED gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein 901 474 Op 2 7/0.082 + CDS 981989 - 983158 1237 ## COG2956 Predicted N-acetylglucosaminyl transferase + Prom 983237 - 983296 5.4 902 475 Op 1 6/0.128 + CDS 983348 - 984085 579 ## COG0284 Orotidine-5'-phosphate decarboxylase 903 475 Op 2 . + CDS 984086 - 984412 361 ## COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins + Term 984420 - 984455 3.3 - Term 984408 - 984443 3.3 904 476 Tu 1 . - CDS 984507 - 984725 321 ## ECBD_2336 lipoprotein - Prom 984878 - 984937 3.3 - Term 984945 - 984982 7.3 905 477 Op 1 . - CDS 984994 - 985746 680 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 985767 - 985826 2.0 906 477 Op 2 . - CDS 985828 - 986010 179 ## CKO_01370 hypothetical protein - Prom 986093 - 986152 4.0 907 477 Op 3 . - CDS 986193 - 988184 1718 ## COG2200 FOG: EAL domain - Prom 988291 - 988350 12.1 - Term 988394 - 988434 3.2 908 478 Op 1 1/0.738 - CDS 988449 - 990383 2226 ## COG4776 Exoribonuclease II - Prom 990412 - 990471 3.0 909 478 Op 2 1/0.738 - CDS 990473 - 991603 526 ## COG4950 Uncharacterized protein conserved in bacteria - Prom 991703 - 991762 5.7 - Term 991765 - 991803 8.3 910 479 Tu 1 . - CDS 991816 - 992604 839 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Prom 992637 - 992696 2.8 911 480 Tu 1 . + CDS 992719 - 992874 67 ## gi|291085298|ref|ZP_06571011.1| CytOchrome o ubiquinol oxidase subunit II + Term 992954 - 992996 6.3 + Prom 992924 - 992983 5.1 912 481 Tu 1 . + CDS 993047 - 993718 442 ## COG2200 FOG: EAL domain + Term 993745 - 993781 4.4 - Term 993609 - 993649 0.2 913 482 Op 1 8/0.048 - CDS 993776 - 994594 443 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 914 482 Op 2 8/0.048 - CDS 994584 - 995576 470 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 915 482 Op 3 8/0.048 - CDS 995576 - 996466 1152 ## COG4171 ABC-type antimicrobial peptide transport system, permease component 916 482 Op 4 8/0.048 - CDS 996453 - 997418 581 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 917 482 Op 5 . - CDS 997415 - 999058 1410 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 999081 - 999140 4.3 - Term 999355 - 999390 1.3 918 483 Tu 1 . - CDS 999400 - 999792 210 ## COG3111 Uncharacterized conserved protein - Prom 999877 - 999936 3.0 + Prom 999827 - 999886 5.3 919 484 Tu 1 . + CDS 999922 - 1000437 246 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Prom 1000458 - 1000517 3.9 920 485 Tu 1 . + CDS 1000622 - 1001530 655 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Term 1001383 - 1001409 -0.3 921 486 Op 1 . - CDS 1001606 - 1002250 446 ## COG1357 Uncharacterized low-complexity proteins - Prom 1002280 - 1002339 4.0 922 486 Op 2 . - CDS 1002346 - 1003320 858 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Prom 1003347 - 1003406 4.4 + Prom 1003332 - 1003391 9.8 923 487 Op 1 . + CDS 1003491 - 1004159 1037 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 924 487 Op 2 . + CDS 1004214 - 1004438 324 ## SG1427 phage shock protein B 925 487 Op 3 . + CDS 1004438 - 1004797 381 ## COG1983 Putative stress-responsive transcriptional regulator 926 487 Op 4 . + CDS 1004806 - 1005036 169 ## SARI_01283 peripheral inner membrane phage-shock protein + Prom 1005076 - 1005135 3.4 927 488 Op 1 2/0.602 + CDS 1005201 - 1006907 1456 ## COG0366 Glycosidases 928 488 Op 2 35/0.000 + CDS 1006924 - 1008216 1351 ## COG1653 ABC-type sugar transport system, periplasmic component 929 488 Op 3 38/0.000 + CDS 1008267 - 1009118 873 ## COG1175 ABC-type sugar transport systems, permease components 930 488 Op 4 5/0.226 + CDS 1009105 - 1009947 943 ## COG0395 ABC-type sugar transport system, permease component 931 488 Op 5 3/0.500 + CDS 1009975 - 1011027 1244 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 932 488 Op 6 16/0.000 + CDS 1011044 - 1011832 1078 ## COG1082 Sugar phosphate isomerases/epimerases 933 488 Op 7 4/0.402 + CDS 1011843 - 1012898 701 ## COG0673 Predicted dehydrogenases and related proteins 934 488 Op 8 11/0.025 + CDS 1012910 - 1015171 1552 ## COG1554 Trehalose and maltose hydrolases (possible phosphorylases) 935 488 Op 9 3/0.500 + CDS 1015168 - 1015836 424 ## COG0637 Predicted phosphatase/phosphohexomutase 936 488 Op 10 . + CDS 1015847 - 1016926 924 ## COG3839 ABC-type sugar transport systems, ATPase components 937 488 Op 11 . + CDS 1017006 - 1017911 894 ## SARI_01294 hypothetical protein + Term 1017918 - 1017951 4.5 - Term 1017902 - 1017940 2.0 938 489 Tu 1 . - CDS 1017943 - 1018953 590 ## COG1609 Transcriptional regulators - Prom 1018984 - 1019043 1.8 + Prom 1018885 - 1018944 2.8 939 490 Op 1 . + CDS 1018980 - 1019153 71 ## gi|291085306|ref|ZP_06571013.1| hypothetical protein CIT292_06951 940 490 Op 2 1/0.738 + CDS 1019184 - 1019501 415 ## COG0607 Rhodanese-related sulfurtransferase + Prom 1019559 - 1019618 9.0 941 491 Op 1 9/0.036 + CDS 1019638 - 1021041 1249 ## COG3106 Predicted ATPase 942 491 Op 2 5/0.226 + CDS 1021038 - 1022099 1224 ## COG3768 Predicted membrane protein + Term 1022157 - 1022189 1.3 + Prom 1022158 - 1022217 5.2 943 492 Tu 1 . + CDS 1022246 - 1023790 1265 ## COG3283 Transcriptional regulator of aromatic amino acids metabolism + Term 1023805 - 1023834 2.1 - Term 1023786 - 1023830 4.5 944 493 Tu 1 . - CDS 1023845 - 1024351 648 ## COG2077 Peroxiredoxin - Prom 1024383 - 1024442 3.2 + Prom 1024331 - 1024390 4.1 945 494 Tu 1 . + CDS 1024467 - 1025453 861 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 946 495 Tu 1 . - CDS 1025407 - 1026135 276 ## COG2866 Predicted carboxypeptidase - Prom 1026240 - 1026299 2.5 + Prom 1026230 - 1026289 4.2 947 496 Tu 1 . + CDS 1026320 - 1027933 1461 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 1028039 - 1028066 -0.8 948 497 Tu 1 . - CDS 1028091 - 1028786 422 ## COG3382 Uncharacterized conserved protein - Prom 1028810 - 1028869 5.3 + Prom 1028742 - 1028801 3.8 949 498 Tu 1 . + CDS 1028830 - 1029432 378 ## COG1396 Predicted transcriptional regulators + Prom 1029581 - 1029640 4.2 950 499 Tu 1 . + CDS 1029662 - 1030531 932 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Prom 1031286 - 1031345 10.1 951 500 Op 1 16/0.000 + CDS 1031420 - 1033819 1901 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 952 500 Op 2 9/0.036 + CDS 1033803 - 1034435 459 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 953 500 Op 3 3/0.500 + CDS 1034428 - 1035261 733 ## COG3302 DMSO reductase anchor subunit 954 500 Op 4 . + CDS 1035264 - 1036136 106 ## COG1145 Ferredoxin 955 501 Tu 1 . - CDS 1036149 - 1036712 536 ## COG1846 Transcriptional regulators - Prom 1036778 - 1036837 5.9 + Prom 1036730 - 1036789 3.7 956 502 Op 1 . + CDS 1036829 - 1037059 303 ## COG0526 Thiol-disulfide isomerase and thioredoxins 957 502 Op 2 . + CDS 1037126 - 1037395 255 ## COG4568 Transcriptional antiterminator + Term 1037436 - 1037475 7.1 958 503 Tu 1 . - CDS 1037382 - 1037585 163 ## KPK_2325 transcriptional regulator, DeoR family + Prom 1037518 - 1037577 3.0 959 504 Tu 1 . + CDS 1037628 - 1037795 246 ## Kvar_2282 glyoxalase/bleomycin resistance protein/dioxygenase + Term 1037929 - 1037959 -0.3 + Prom 1037859 - 1037918 2.3 960 505 Op 1 1/0.738 + CDS 1037968 - 1038597 410 ## COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 961 505 Op 2 . + CDS 1038638 - 1039690 1012 ## COG1064 Zn-dependent alcohol dehydrogenases + Term 1039702 - 1039732 3.0 - Term 1039686 - 1039724 5.8 962 506 Tu 1 . - CDS 1039730 - 1040761 543 ## COG0668 Small-conductance mechanosensitive channel - Prom 1040813 - 1040872 3.1 + Prom 1040772 - 1040831 2.1 963 507 Tu 1 . + CDS 1041006 - 1041266 345 ## ROD_16741 putative outer membrane protein 964 508 Tu 1 . - CDS 1041312 - 1042262 1094 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Prom 1042644 - 1042703 8.2 965 509 Tu 1 . + CDS 1042866 - 1047359 4219 ## COG3468 Type V secretory pathway, adhesin AidA + Term 1047443 - 1047482 7.1 966 510 Op 1 . - CDS 1047613 - 1049487 2217 ## COG3468 Type V secretory pathway, adhesin AidA 967 510 Op 2 . - CDS 1049415 - 1052606 2887 ## SeAg_B2662 ShdA - Prom 1052629 - 1052688 8.7 - Term 1053168 - 1053227 10.1 968 511 Op 1 . - CDS 1053252 - 1054004 750 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - Prom 1054030 - 1054089 4.0 969 511 Op 2 . - CDS 1054199 - 1054714 483 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 1054870 - 1054929 5.0 + Prom 1054845 - 1054904 4.9 970 512 Tu 1 . + CDS 1054928 - 1055491 514 ## COG2840 Uncharacterized protein conserved in bacteria 971 513 Op 1 . - CDS 1055504 - 1056736 865 ## COG2199 FOG: GGDEF domain 972 513 Op 2 . - CDS 1056803 - 1058917 1255 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - Prom 1058944 - 1059003 2.6 973 514 Tu 1 . + CDS 1059331 - 1060440 662 ## COG0840 Methyl-accepting chemotaxis protein + Prom 1060468 - 1060527 3.9 974 515 Tu 1 . + CDS 1060583 - 1061536 911 ## COG0598 Mg2+ and Co2+ transporters + Term 1061638 - 1061682 2.2 + Prom 1061727 - 1061786 4.9 975 516 Tu 1 . + CDS 1062022 - 1063395 1248 ## COG0513 Superfamily II DNA and RNA helicases + Term 1063407 - 1063432 -0.5 976 517 Op 1 3/0.500 - CDS 1063477 - 1064412 1128 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 977 517 Op 2 . - CDS 1064461 - 1064781 200 ## COG0582 Integrase - Prom 1064840 - 1064899 4.8 - Term 1065028 - 1065061 3.0 978 518 Op 1 . - CDS 1065069 - 1065503 472 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 1065524 - 1065583 5.8 979 518 Op 2 . - CDS 1065585 - 1065797 226 ## CKO_01421 hypothetical protein - Prom 1065822 - 1065881 1.5 - Term 1065904 - 1065935 5.5 980 519 Tu 1 . - CDS 1065943 - 1067070 1316 ## COG3203 Outer membrane protein (porin) - Prom 1067207 - 1067266 11.1 - Term 1067367 - 1067398 4.1 981 520 Tu 1 . - CDS 1067440 - 1070964 3594 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit - Prom 1071028 - 1071087 3.3 + Prom 1071146 - 1071205 3.3 982 521 Tu 1 . + CDS 1071240 - 1071506 195 ## COG3042 Putative hemolysin 983 522 Tu 1 . - CDS 1071520 - 1071939 384 ## COG3187 Heat shock protein - Prom 1071970 - 1072029 2.5 - Term 1072010 - 1072045 7.4 984 523 Tu 1 . - CDS 1072052 - 1073041 1295 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 1073082 - 1073141 7.5 + Prom 1073041 - 1073100 3.2 985 524 Tu 1 . + CDS 1073300 - 1073512 96 ## + Term 1073561 - 1073598 1.7 + Prom 1073598 - 1073657 2.0 986 525 Op 1 . + CDS 1073678 - 1076317 2272 ## CKO_01435 hypothetical protein 987 525 Op 2 . + CDS 1076314 - 1076505 226 ## Entcl_2429 putative outer membrane lipoprotein 988 525 Op 3 . + CDS 1076513 - 1076836 392 ## COG3784 Uncharacterized protein conserved in bacteria + Prom 1076862 - 1076921 5.6 989 526 Op 1 4/0.402 + CDS 1076947 - 1077552 508 ## COG0558 Phosphatidylglycerophosphate synthase 990 526 Op 2 5/0.226 + CDS 1077549 - 1078466 822 ## COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase 991 526 Op 3 1/0.738 + CDS 1078470 - 1079111 516 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 992 526 Op 4 5/0.226 + CDS 1079104 - 1080864 1612 ## COG2267 Lysophospholipase 993 526 Op 5 . + CDS 1080878 - 1082158 1001 ## COG0671 Membrane-associated phospholipid phosphatase + Term 1082180 - 1082226 2.3 994 527 Op 1 . + CDS 1082242 - 1082535 242 ## ROD_16301 hypothetical protein + Prom 1082551 - 1082610 3.6 995 527 Op 2 . + CDS 1082634 - 1082825 90 ## gi|283833015|ref|ZP_06352756.1| conserved hypothetical protein - Term 1082826 - 1082861 6.5 996 528 Tu 1 . - CDS 1082869 - 1083474 955 ## COG1182 Acyl carrier protein phosphodiesterase - Prom 1083637 - 1083696 3.4 + Prom 1083527 - 1083586 1.7 997 529 Tu 1 . + CDS 1083707 - 1087579 4474 ## COG1643 HrpA-like helicases + Term 1087608 - 1087649 4.6 + Prom 1087999 - 1088058 5.7 998 530 Tu 1 . + CDS 1088108 - 1088641 545 ## COG3501 Uncharacterized protein conserved in bacteria + Prom 1088643 - 1088702 80.3 999 531 Op 1 . + CDS 1088751 - 1089629 446 ## COG3501 Uncharacterized protein conserved in bacteria 1000 531 Op 2 . + CDS 1089650 - 1090081 331 ## EFER_1979 hypothetical protein 1001 531 Op 3 . + CDS 1090097 - 1094683 2309 ## COG3209 Rhs family protein 1002 531 Op 4 . + CDS 1094718 - 1095065 155 ## gi|283833022|ref|ZP_06352763.1| conserved hypothetical protein + Term 1095094 - 1095131 5.1 1003 532 Tu 1 . - CDS 1095150 - 1095359 298 ## SEN0274 hypothetical protein - Prom 1095431 - 1095490 3.2 + Prom 1095718 - 1095777 1.6 1004 533 Op 1 . + CDS 1095851 - 1096030 61 ## PSEEN5274 hypothetical protein 1005 533 Op 2 . + CDS 1096033 - 1096320 83 ## PSEEN4585 hypothetical protein + Term 1096331 - 1096370 5.0 - Term 1096319 - 1096356 3.0 1006 534 Tu 1 . - CDS 1096389 - 1096562 224 ## SC0286 hypothetical protein 1007 535 Tu 1 . - CDS 1097061 - 1097273 78 ## - Prom 1097347 - 1097406 1.9 + Prom 1097072 - 1097131 2.6 1008 536 Tu 1 . + CDS 1097278 - 1098069 699 ## COG1434 Uncharacterized conserved protein + Prom 1098186 - 1098245 5.8 1009 537 Tu 1 . + CDS 1098271 - 1099710 1555 ## COG1012 NAD-dependent aldehyde dehydrogenases - Term 1099772 - 1099804 5.0 1010 538 Tu 1 . - CDS 1099811 - 1100812 1329 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 1100940 - 1100999 4.9 + Prom 1100918 - 1100977 5.1 1011 539 Tu 1 . + CDS 1101002 - 1101532 631 ## COG3038 Cytochrome B561 + Prom 1101686 - 1101745 4.1 1012 540 Op 1 4/0.402 + CDS 1101778 - 1102197 337 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) 1013 540 Op 2 . + CDS 1102200 - 1103465 829 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Prom 1104209 - 1104268 5.7 1014 541 Tu 1 . + CDS 1104408 - 1104611 203 ## SeSA_A4454 hypothetical protein - Term 1104909 - 1104955 4.5 1015 542 Tu 1 . - CDS 1104977 - 1105192 153 ## gi|291085337|ref|ZP_06352776.2| putative oxidoreductase - Prom 1105235 - 1105294 2.0 + Prom 1105641 - 1105700 7.0 1016 543 Op 1 2/0.602 + CDS 1105720 - 1105995 227 ## COG1937 Uncharacterized protein conserved in bacteria 1017 543 Op 2 1/0.738 + CDS 1106028 - 1107146 1407 ## COG1062 Zn-dependent alcohol dehydrogenases, class III + Term 1107154 - 1107187 6.1 1018 544 Tu 1 . + CDS 1107316 - 1109004 1408 ## COG0840 Methyl-accepting chemotaxis protein + Term 1109012 - 1109047 5.1 - Term 1109003 - 1109029 -1.0 1019 545 Tu 1 . - CDS 1109044 - 1110057 869 ## COG0583 Transcriptional regulator - Prom 1110149 - 1110208 2.4 + Prom 1110097 - 1110156 6.1 1020 546 Tu 1 . + CDS 1110198 - 1111100 783 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Prom 1111138 - 1111197 4.2 1021 547 Tu 1 . + CDS 1111221 - 1112564 1147 ## COG5383 Uncharacterized protein conserved in bacteria 1022 548 Tu 1 . + CDS 1112794 - 1114413 1878 ## COG3131 Periplasmic glucans biosynthesis protein + Term 1114420 - 1114467 -0.7 + Prom 1114477 - 1114536 1.8 1023 549 Op 1 1/0.738 + CDS 1114580 - 1114804 198 ## COG2841 Uncharacterized protein conserved in bacteria + Term 1114830 - 1114862 3.9 + Prom 1114811 - 1114870 4.9 1024 549 Op 2 . + CDS 1114896 - 1115441 718 ## PROTEIN SUPPORTED gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase 1025 550 Tu 1 . - CDS 1115433 - 1116413 795 ## CKO_01465 hypothetical protein - Prom 1116501 - 1116560 6.4 + Prom 1116442 - 1116501 4.6 1026 551 Op 1 4/0.402 + CDS 1116527 - 1117528 923 ## COG1275 Tellurite resistance protein and related permeases 1027 551 Op 2 . + CDS 1117528 - 1118124 674 ## COG0500 SAM-dependent methyltransferases + Term 1118208 - 1118243 -0.6 + Prom 1118136 - 1118195 4.0 1028 552 Tu 1 . + CDS 1118280 - 1118951 650 ## SeSA_A1724 putative lipoprotein + Term 1118956 - 1118995 7.5 - Term 1118947 - 1118980 5.4 1029 553 Tu 1 . - CDS 1118986 - 1119894 905 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1120011 - 1120070 2.2 + Prom 1119930 - 1119989 2.4 1030 554 Tu 1 . + CDS 1120080 - 1120949 647 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 1120757 - 1120795 0.3 1031 555 Tu 1 . - CDS 1120932 - 1122098 937 ## COG3135 Uncharacterized protein involved in benzoate metabolism - Prom 1122123 - 1122182 2.9 1032 556 Op 1 3/0.500 + CDS 1122204 - 1122740 396 ## COG1396 Predicted transcriptional regulators 1033 556 Op 2 . + CDS 1122820 - 1124781 1800 ## COG0826 Collagenase and related proteases + Term 1124805 - 1124864 1.2 1034 557 Tu 1 . - CDS 1124785 - 1125015 242 ## ECL_02022 hypothetical protein - Prom 1125071 - 1125130 2.8 1035 558 Op 1 . - CDS 1125205 - 1125330 141 ## 1036 558 Op 2 31/0.000 - CDS 1125330 - 1126340 1145 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 1037 558 Op 3 . - CDS 1126340 - 1127743 1405 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 1127820 - 1127879 4.2 + Prom 1127873 - 1127932 7.1 1038 559 Tu 1 . + CDS 1127955 - 1128962 404 ## CKO_02131 hypothetical protein + Prom 1129009 - 1129068 5.3 1039 560 Tu 1 . + CDS 1129107 - 1130516 1189 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 1130524 - 1130564 5.0 + Prom 1130618 - 1130677 4.2 1040 561 Tu 1 13/0.013 + CDS 1130846 - 1131991 1432 ## COG0687 Spermidine/putrescine-binding periplasmic protein 1041 562 Op 1 30/0.000 + CDS 1132110 - 1133024 960 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 1042 562 Op 2 36/0.000 + CDS 1133025 - 1133969 1084 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 1043 562 Op 3 5/0.226 + CDS 1133959 - 1134765 718 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 1044 562 Op 4 . + CDS 1134787 - 1136214 1593 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 1136353 - 1136400 10.7 - Term 1136344 - 1136384 5.8 1045 563 Tu 1 . - CDS 1136402 - 1137592 927 ## COG0477 Permeases of the major facilitator superfamily - Prom 1137618 - 1137677 1.8 + Prom 1137540 - 1137599 2.7 1046 564 Op 1 . + CDS 1137628 - 1138389 443 ## COG2207 AraC-type DNA-binding domain-containing proteins 1047 564 Op 2 . + CDS 1138467 - 1138682 78 ## CKO_01480 hypothetical protein 1048 565 Op 1 4/0.402 - CDS 1139007 - 1141166 1621 ## COG4458 Uncharacterized protein conserved in bacteria, putative virulence factor 1049 565 Op 2 . - CDS 1141163 - 1144144 2870 ## COG4457 Uncharacterized protein conserved in bacteria, putative virulence factor 1050 565 Op 3 . - CDS 1144149 - 1145456 1108 ## SeAg_B1567 ssrAB activated gene - Prom 1145570 - 1145629 5.3 + Prom 1145645 - 1145704 5.2 1051 566 Op 1 . + CDS 1145739 - 1147337 1653 ## COG0747 ABC-type dipeptide transport system, periplasmic component 1052 566 Op 2 . + CDS 1147355 - 1147588 387 ## G2583_1807 hypothetical protein 1053 567 Op 1 4/0.402 - CDS 1147625 - 1148074 433 ## COG3238 Uncharacterized protein conserved in bacteria 1054 567 Op 2 . - CDS 1148071 - 1148589 531 ## COG1247 Sortase and related acyltransferases - Prom 1148617 - 1148676 2.2 + Prom 1148470 - 1148529 1.6 1055 568 Op 1 . + CDS 1148627 - 1149202 495 ## COG1396 Predicted transcriptional regulators 1056 568 Op 2 . + CDS 1149260 - 1150297 1180 ## COG2130 Putative NADP-dependent oxidoreductases + Term 1150306 - 1150336 5.0 - Term 1150289 - 1150326 -0.1 1057 569 Tu 1 . - CDS 1150329 - 1152449 1730 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 1152517 - 1152576 7.3 + Prom 1152500 - 1152559 8.0 1058 570 Op 1 . + CDS 1152711 - 1153772 1391 ## COG3391 Uncharacterized conserved protein + Term 1153778 - 1153811 0.6 + Prom 1153819 - 1153878 2.1 1059 570 Op 2 . + CDS 1153909 - 1154130 216 ## STM1585 outer membrane lipoprotein + Term 1154138 - 1154175 4.4 - Term 1154124 - 1154165 6.1 1060 571 Tu 1 . - CDS 1154173 - 1155615 1827 ## COG1113 Gamma-aminobutyrate permease and related permeases + Prom 1155855 - 1155914 4.8 1061 572 Op 1 1/0.738 + CDS 1155948 - 1156946 1035 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 1062 572 Op 2 1/0.738 + CDS 1156946 - 1158067 968 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 1063 572 Op 3 . + CDS 1158093 - 1159406 966 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 1064 572 Op 4 5/0.226 + CDS 1159424 - 1160356 1225 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 1065 572 Op 5 1/0.738 + CDS 1160367 - 1160876 538 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 1066 572 Op 6 34/0.000 + CDS 1160886 - 1161812 1014 ## COG0765 ABC-type amino acid transport system, permease component 1067 572 Op 7 . + CDS 1161796 - 1162569 250 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Term 1162573 - 1162614 5.1 1068 573 Op 1 1/0.738 - CDS 1162616 - 1163605 690 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 1163633 - 1163692 1.6 1069 573 Op 2 . - CDS 1163695 - 1164624 317 ## COG0583 Transcriptional regulator + Prom 1164628 - 1164687 2.9 1070 574 Op 1 . + CDS 1164746 - 1165363 442 ## COG0625 Glutathione S-transferase 1071 574 Op 2 . + CDS 1165401 - 1165628 358 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 1165636 - 1165666 5.0 - Term 1165624 - 1165654 5.0 1072 575 Op 1 . - CDS 1165665 - 1165784 137 ## ECL_02158 putative hydrolase 1073 575 Op 2 . - CDS 1165806 - 1166423 572 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family - Prom 1166497 - 1166556 2.7 + Prom 1166306 - 1166365 2.7 1074 576 Tu 1 . + CDS 1166540 - 1167385 871 ## COG2162 Arylamine N-acetyltransferase - Term 1167389 - 1167431 3.5 1075 577 Tu 1 . - CDS 1167445 - 1168347 935 ## COG0384 Predicted epimerase, PhzC/PhzF homolog - Prom 1168370 - 1168429 3.6 - Term 1168370 - 1168410 -0.8 1076 578 Op 1 12/0.017 - CDS 1168452 - 1169132 742 ## COG2181 Nitrate reductase gamma subunit 1077 578 Op 2 12/0.017 - CDS 1169129 - 1169824 809 ## COG2180 Nitrate reductase delta subunit 1078 578 Op 3 13/0.013 - CDS 1169824 - 1171368 1654 ## COG1140 Nitrate reductase beta subunit 1079 578 Op 4 10/0.031 - CDS 1171365 - 1175105 4026 ## COG5013 Nitrate reductase alpha subunit - Prom 1175154 - 1175213 1.8 1080 579 Tu 1 . - CDS 1175240 - 1176628 1096 ## COG2223 Nitrate/nitrite transporter - Prom 1176725 - 1176784 2.2 1081 580 Tu 1 . - CDS 1176839 - 1177417 635 ## COG1309 Transcriptional regulator - Prom 1177438 - 1177497 6.0 + Prom 1177435 - 1177494 2.6 1082 581 Tu 1 . + CDS 1177535 - 1179022 1540 ## COG0477 Permeases of the major facilitator superfamily + Term 1179095 - 1179127 -0.3 - Term 1178832 - 1178876 0.6 1083 582 Op 1 . - CDS 1179023 - 1179463 295 ## COG3791 Uncharacterized conserved protein - Term 1179491 - 1179523 3.0 1084 582 Op 2 3/0.500 - CDS 1179547 - 1180626 1378 ## COG3203 Outer membrane protein (porin) - Term 1180992 - 1181034 1.5 1085 583 Tu 1 . - CDS 1181085 - 1181966 625 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1182011 - 1182070 2.8 + Prom 1181946 - 1182005 3.7 1086 584 Op 1 5/0.226 + CDS 1182253 - 1182840 415 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 1087 584 Op 2 16/0.000 + CDS 1182889 - 1185300 2815 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 1088 584 Op 3 12/0.017 + CDS 1185313 - 1186197 877 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 1089 584 Op 4 . + CDS 1186190 - 1186846 894 ## COG2864 Cytochrome b subunit of formate dehydrogenase + Term 1186868 - 1186901 4.5 - Term 1186856 - 1186889 1.3 1090 585 Tu 1 . - CDS 1186948 - 1187232 269 ## COG3093 Plasmid maintenance system antidote protein 1091 586 Tu 1 . - CDS 1187731 - 1189446 1582 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 1189488 - 1189547 1.5 - Term 1189469 - 1189502 -0.2 1092 587 Tu 1 . - CDS 1189559 - 1189642 95 ## - Prom 1189662 - 1189721 4.6 1093 588 Tu 1 . - CDS 1189755 - 1191452 2072 ## COG0281 Malic enzyme - Prom 1191525 - 1191584 3.0 - Term 1191564 - 1191598 4.0 1094 589 Tu 1 . - CDS 1191633 - 1191773 206 ## PROTEIN SUPPORTED gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22 - Prom 1191880 - 1191939 3.4 + Prom 1191917 - 1191976 4.7 1095 590 Tu 1 . + CDS 1192002 - 1192433 583 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Term 1192578 - 1192614 -0.6 1096 591 Op 1 5/0.226 - CDS 1192480 - 1193250 834 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 1097 591 Op 2 . - CDS 1193262 - 1194653 1643 ## COG2610 H+/gluconate symporter and related permeases 1098 591 Op 3 20/0.000 - CDS 1194700 - 1195623 1024 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 1099 591 Op 4 7/0.082 - CDS 1195613 - 1196818 1194 ## COG0183 Acetyl-CoA acetyltransferase 1100 591 Op 5 21/0.000 - CDS 1196829 - 1197485 880 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 1101 591 Op 6 . - CDS 1197488 - 1198195 855 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit - Prom 1198291 - 1198350 5.8 + Prom 1198239 - 1198298 7.5 1102 592 Tu 1 . + CDS 1198338 - 1199228 820 ## COG0583 Transcriptional regulator - Term 1199033 - 1199085 3.1 1103 593 Op 1 17/0.000 - CDS 1199242 - 1200183 616 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 1104 593 Op 2 44/0.000 - CDS 1200176 - 1201174 469 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 1105 593 Op 3 49/0.000 - CDS 1201159 - 1202052 1086 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1106 593 Op 4 38/0.000 - CDS 1202052 - 1203074 299 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 1107 593 Op 5 3/0.500 - CDS 1203119 - 1204681 1897 ## COG0747 ABC-type dipeptide transport system, periplasmic component 1108 593 Op 6 . - CDS 1204697 - 1205284 614 ## COG2173 D-alanyl-D-alanine dipeptidase 1109 593 Op 7 . - CDS 1205299 - 1206165 849 ## COG1737 Transcriptional regulators - Prom 1206206 - 1206265 1.5 + Prom 1206443 - 1206502 6.6 1110 594 Tu 1 . + CDS 1206567 - 1206896 404 ## SARI_01409 acid-resistance protein + Term 1206911 - 1206950 6.0 + Prom 1206941 - 1207000 5.3 1111 595 Tu 1 . + CDS 1207052 - 1208995 1717 ## COG0840 Methyl-accepting chemotaxis protein + Term 1209142 - 1209193 5.1 1112 596 Op 1 . - CDS 1209041 - 1209361 248 ## COG1566 Multidrug resistance efflux pump 1113 596 Op 2 . - CDS 1209383 - 1210180 664 ## COG1566 Multidrug resistance efflux pump 1114 596 Op 3 . - CDS 1210183 - 1210524 123 ## Kvar_1460 hypothetical protein 1115 596 Op 4 . - CDS 1210566 - 1210751 87 ## Ent638_3905 ion transport 2 domain-containing protein - Prom 1210825 - 1210884 4.6 + Prom 1210998 - 1211057 7.8 1116 597 Tu 1 . + CDS 1211155 - 1211814 408 ## Spro_3698 CRP/FNR family transcriptional regulator 1117 598 Op 1 . - CDS 1211943 - 1213310 1145 ## COG1649 Uncharacterized protein conserved in bacteria 1118 598 Op 2 . - CDS 1213323 - 1213610 270 ## COG4628 Uncharacterized conserved protein - Prom 1213653 - 1213712 3.5 - Term 1213661 - 1213715 3.2 1119 599 Tu 1 . - CDS 1213843 - 1214757 398 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 1214845 - 1214904 4.3 + Prom 1214804 - 1214863 3.1 1120 600 Tu 1 . + CDS 1215026 - 1216105 782 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 1216134 - 1216177 2.1 + Prom 1216153 - 1216212 3.7 1121 601 Op 1 6/0.128 + CDS 1216236 - 1216550 178 ## COG4680 Uncharacterized protein conserved in bacteria 1122 601 Op 2 . + CDS 1216550 - 1216963 286 ## COG5499 Predicted transcription regulator containing HTH domain + Term 1217004 - 1217039 4.0 - Term 1217311 - 1217354 4.8 1123 602 Tu 1 . - CDS 1217579 - 1218103 534 ## PROTEIN SUPPORTED gi|184158399|ref|YP_001846738.1| acetyltransferase + Prom 1218280 - 1218339 4.2 1124 603 Op 1 . + CDS 1218495 - 1219895 1434 ## COG0471 Di- and tricarboxylate transporters 1125 603 Op 2 . + CDS 1219929 - 1220885 774 ## COG1052 Lactate dehydrogenase and related dehydrogenases 1126 603 Op 3 . + CDS 1220901 - 1221380 427 ## COG2731 Beta-galactosidase, beta subunit 1127 603 Op 4 . + CDS 1221393 - 1222136 639 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 1222160 - 1222192 -0.2 + Prom 1222149 - 1222208 4.5 1128 604 Tu 1 . + CDS 1222318 - 1223076 558 ## COG4106 Trans-aconitate methyltransferase + Term 1223169 - 1223197 -0.9 + Prom 1223089 - 1223148 2.1 1129 605 Tu 1 . + CDS 1223207 - 1223566 169 ## COG3791 Uncharacterized conserved protein 1130 606 Op 1 . - CDS 1223585 - 1224025 278 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 1131 606 Op 2 1/0.738 - CDS 1224054 - 1224968 796 ## COG3781 Predicted membrane protein - Prom 1225099 - 1225158 3.8 - Term 1225142 - 1225169 -0.1 1132 607 Tu 1 . - CDS 1225177 - 1226628 1624 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Prom 1226672 - 1226731 2.2 1133 608 Op 1 . - CDS 1226735 - 1227250 268 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 1134 608 Op 2 . - CDS 1227331 - 1227690 84 ## G2583_1888 hypothetical protein 1135 608 Op 3 3/0.500 - CDS 1227690 - 1228616 840 ## COG2066 Glutaminase - Prom 1228646 - 1228705 4.3 - Term 1228748 - 1228786 4.1 1136 609 Tu 1 . - CDS 1228791 - 1230179 1407 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 1230241 - 1230300 3.8 + Prom 1230197 - 1230256 3.3 1137 610 Tu 1 . + CDS 1230282 - 1231157 675 ## COG0583 Transcriptional regulator 1138 611 Op 1 1/0.738 - CDS 1231154 - 1231885 709 ## COG1349 Transcriptional regulators of sugar metabolism 1139 611 Op 2 3/0.500 - CDS 1231917 - 1232903 456 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 1140 611 Op 3 . - CDS 1232896 - 1234140 936 ## COG3395 Uncharacterized protein conserved in bacteria - Prom 1234226 - 1234285 5.2 + Prom 1234137 - 1234196 3.0 1141 612 Op 1 . + CDS 1234309 - 1235241 532 ## COG1454 Alcohol dehydrogenase, class IV 1142 612 Op 2 . + CDS 1235156 - 1235467 237 ## Kvar_2706 iron-containing alcohol dehydrogenase 1143 612 Op 3 1/0.738 + CDS 1235471 - 1236355 782 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1144 612 Op 4 . + CDS 1236403 - 1237353 707 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 1145 612 Op 5 1/0.738 + CDS 1237419 - 1238738 911 ## COG0477 Permeases of the major facilitator superfamily + Prom 1238830 - 1238889 6.1 1146 613 Tu 1 . + CDS 1238922 - 1240118 1266 ## COG2814 Arabinose efflux permease + Term 1240123 - 1240161 5.2 - Term 1240111 - 1240149 5.2 1147 614 Tu 1 . - CDS 1240155 - 1240820 653 ## COG2095 Multiple antibiotic transporter - Prom 1240850 - 1240909 5.4 + Prom 1240974 - 1241033 4.0 1148 615 Op 1 3/0.500 + CDS 1241078 - 1241512 303 ## COG1846 Transcriptional regulators 1149 615 Op 2 . + CDS 1241531 - 1241914 317 ## COG2207 AraC-type DNA-binding domain-containing proteins 1150 615 Op 3 . + CDS 1241945 - 1242163 253 ## CKO_01553 hypothetical protein 1151 616 Tu 1 . - CDS 1242208 - 1242441 83 ## gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) - Prom 1242578 - 1242637 3.1 1152 617 Tu 1 . - CDS 1242742 - 1243641 971 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1243766 - 1243825 6.2 + Prom 1243615 - 1243674 5.0 1153 618 Tu 1 . + CDS 1243840 - 1245027 924 ## COG0477 Permeases of the major facilitator superfamily 1154 619 Op 1 9/0.036 - CDS 1245068 - 1245766 269 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1155 619 Op 2 9/0.036 - CDS 1245776 - 1246573 230 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1156 619 Op 3 24/0.000 - CDS 1246573 - 1247646 1339 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 1157 619 Op 4 20/0.000 - CDS 1247646 - 1249220 1385 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 1158 619 Op 5 . - CDS 1249264 - 1250535 1294 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component + Prom 1250848 - 1250907 5.0 1159 620 Tu 1 . + CDS 1251024 - 1251119 88 ## + Term 1251147 - 1251190 9.2 - Term 1251327 - 1251358 -0.2 1160 621 Tu 1 . - CDS 1251402 - 1252328 508 ## COG2199 FOG: GGDEF domain - Prom 1252361 - 1252420 5.6 - Term 1252433 - 1252482 4.2 1161 622 Tu 1 . - CDS 1252498 - 1254543 1627 ## COG0339 Zn-dependent oligopeptidases - Prom 1254566 - 1254625 2.3 + Prom 1254595 - 1254654 3.4 1162 623 Op 1 5/0.226 + CDS 1254681 - 1255427 901 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity + Prom 1255429 - 1255488 3.0 1163 623 Op 2 . + CDS 1255514 - 1256200 686 ## COG1802 Transcriptional regulators + Term 1256208 - 1256240 2.3 + Prom 1256273 - 1256332 1.8 1164 624 Tu 1 . + CDS 1256390 - 1256593 304 ## ROD_14861 hypothetical protein - Term 1256604 - 1256650 9.6 1165 625 Tu 1 3/0.500 - CDS 1256669 - 1258135 1663 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases - Prom 1258166 - 1258225 4.6 1166 626 Op 1 7/0.082 - CDS 1258301 - 1259680 1094 ## COG0477 Permeases of the major facilitator superfamily 1167 626 Op 2 2/0.602 - CDS 1259734 - 1260753 632 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 1168 626 Op 3 2/0.602 - CDS 1260767 - 1261981 1322 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Prom 1262010 - 1262069 5.3 1169 627 Tu 1 . - CDS 1262089 - 1262415 242 ## COG1742 Uncharacterized conserved protein - Prom 1262565 - 1262624 2.6 + Prom 1262468 - 1262527 3.6 1170 628 Op 1 . + CDS 1262568 - 1262909 436 ## SARI_01439 hypothetical protein 1171 628 Op 2 . + CDS 1262945 - 1263505 463 ## PROTEIN SUPPORTED gi|116512426|ref|YP_809642.1| spermidine acetyltransferase 1172 629 Tu 1 . - CDS 1263512 - 1264258 912 ## CKO_01579 hypothetical protein - Prom 1264299 - 1264358 3.3 + Prom 1264028 - 1264087 2.4 1173 630 Tu 1 . + CDS 1264329 - 1264634 252 ## CKO_01580 hypothetical protein + Term 1264651 - 1264680 2.8 + Prom 1264667 - 1264726 3.4 1174 631 Op 1 16/0.000 + CDS 1264793 - 1267231 1818 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 1175 631 Op 2 9/0.036 + CDS 1267242 - 1267859 562 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 1176 631 Op 3 4/0.402 + CDS 1267861 - 1268715 915 ## COG3302 DMSO reductase anchor subunit + Term 1268723 - 1268753 3.0 1177 631 Op 4 . + CDS 1268757 - 1269371 716 ## COG3381 Uncharacterized component of anaerobic dehydrogenases + Term 1269394 - 1269438 1.2 + Prom 1269407 - 1269466 2.8 1178 632 Tu 1 . + CDS 1269491 - 1270780 1031 ## COG0038 Chloride channel protein EriC 1179 633 Tu 1 . - CDS 1270736 - 1271431 749 ## COG0132 Dethiobiotin synthetase - Prom 1271451 - 1271510 3.6 1180 634 Tu 1 5/0.226 - CDS 1271557 - 1272777 279 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 1272815 - 1272874 1.9 1181 635 Tu 1 . - CDS 1272896 - 1273804 217 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Prom 1273828 - 1273887 4.4 + Prom 1273763 - 1273822 4.5 1182 636 Tu 1 . + CDS 1273912 - 1275162 1183 ## COG0477 Permeases of the major facilitator superfamily + Term 1275168 - 1275201 6.5 1183 637 Op 1 1/0.738 - CDS 1275194 - 1275871 410 ## COG1266 Predicted metal-dependent membrane protease - Prom 1275894 - 1275953 5.8 1184 637 Op 2 40/0.000 - CDS 1275964 - 1277436 985 ## COG0642 Signal transduction histidine kinase 1185 637 Op 3 . - CDS 1277433 - 1278155 765 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 1278368 - 1278427 3.8 + Prom 1278042 - 1278101 4.8 1186 638 Op 1 13/0.013 + CDS 1278344 - 1279348 659 ## COG2041 Sulfite oxidase and related enzymes 1187 638 Op 2 . + CDS 1279349 - 1279975 439 ## COG2717 Predicted membrane protein 1188 638 Op 3 . + CDS 1280023 - 1281510 1352 ## COG2317 Zn-dependent carboxypeptidase + Prom 1281540 - 1281599 2.0 1189 639 Tu 1 . + CDS 1281648 - 1282037 338 ## gi|291085391|ref|ZP_06352950.2| acid shock protein + Prom 1282203 - 1282262 3.4 1190 640 Tu 1 . + CDS 1282308 - 1283129 570 ## COG3591 V8-like Glu-specific endopeptidase + Term 1283134 - 1283169 5.7 - Term 1283061 - 1283100 -0.3 1191 641 Op 1 12/0.017 - CDS 1283164 - 1283493 565 ## COG2076 Membrane transporters of cations and cationic drugs 1192 641 Op 2 . - CDS 1283480 - 1283842 350 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 1284049 - 1284108 5.1 + Prom 1284051 - 1284110 5.6 1193 642 Tu 1 . + CDS 1284262 - 1285296 1117 ## COG0628 Predicted permease + Term 1285303 - 1285332 3.5 - Term 1285287 - 1285321 2.4 1194 643 Tu 1 . - CDS 1285328 - 1286524 969 ## COG0477 Permeases of the major facilitator superfamily - Prom 1286575 - 1286634 5.4 - Term 1286619 - 1286652 2.9 1195 644 Op 1 17/0.000 - CDS 1286669 - 1288057 1816 ## COG1282 NAD/NADP transhydrogenase beta subunit 1196 644 Op 2 . - CDS 1288068 - 1289597 1738 ## COG3288 NAD/NADP transhydrogenase alpha subunit - Prom 1289692 - 1289751 5.4 + Prom 1290022 - 1290081 1.6 1197 645 Tu 1 . + CDS 1290123 - 1291067 953 ## ROD_14601 hypothetical protein + Term 1291084 - 1291123 4.1 + Prom 1291163 - 1291222 6.2 1198 646 Op 1 7/0.082 + CDS 1291254 - 1292636 1642 ## COG0531 Amino acid transporters 1199 646 Op 2 . + CDS 1292673 - 1293395 621 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 1200 647 Tu 1 . - CDS 1293392 - 1293727 321 ## COG3136 Uncharacterized membrane protein required for alginate biosynthesis - Prom 1293756 - 1293815 4.7 + Prom 1293775 - 1293834 2.3 1201 648 Tu 1 . + CDS 1293854 - 1294597 896 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 1294696 - 1294734 6.0 - Term 1294479 - 1294520 -0.7 1202 649 Tu 1 . - CDS 1294730 - 1295758 702 ## COG3376 High-affinity nickel permease - Prom 1295884 - 1295943 2.3 + Prom 1295843 - 1295902 3.2 1203 650 Tu 1 . + CDS 1295973 - 1296764 552 ## Entcl_2562 beta-lactamase-like protein + Prom 1297093 - 1297152 4.8 1204 651 Op 1 . + CDS 1297201 - 1298502 1056 ## COG0642 Signal transduction histidine kinase 1205 651 Op 2 . + CDS 1298576 - 1299505 1033 ## CKO_01620 DNA replication terminus site-binding protein 1206 652 Tu 1 4/0.402 - CDS 1299502 - 1300905 1313 ## COG0114 Fumarase - Prom 1300967 - 1301026 4.2 - Term 1301013 - 1301040 -0.1 1207 653 Tu 1 . - CDS 1301047 - 1302693 483 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase - Prom 1302826 - 1302885 4.6 1208 654 Op 1 4/0.402 + CDS 1302956 - 1304131 1194 ## COG1482 Phosphomannose isomerase 1209 654 Op 2 . + CDS 1304184 - 1305746 1687 ## COG5339 Uncharacterized protein conserved in bacteria + Term 1305763 - 1305798 2.3 1210 655 Tu 1 . - CDS 1305800 - 1306879 1009 ## COG1609 Transcriptional regulators - Prom 1306910 - 1306969 3.1 + Prom 1306849 - 1306908 4.2 1211 656 Op 1 3/0.500 + CDS 1306997 - 1308589 1596 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 1212 656 Op 2 . + CDS 1308600 - 1309772 966 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 1309779 - 1309817 7.1 + Prom 1309910 - 1309969 9.1 1213 657 Op 1 3/0.500 + CDS 1310201 - 1310386 228 ## COG3729 General stress protein + Term 1310426 - 1310464 5.1 + Prom 1310390 - 1310449 2.9 1214 657 Op 2 4/0.402 + CDS 1310479 - 1310976 627 ## COG3685 Uncharacterized protein conserved in bacteria 1215 657 Op 3 . + CDS 1311001 - 1311507 369 ## COG3685 Uncharacterized protein conserved in bacteria + Term 1311517 - 1311548 2.1 1216 658 Op 1 31/0.000 + CDS 1311559 - 1312965 875 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 1217 658 Op 2 . + CDS 1312965 - 1313975 996 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 + Prom 1314050 - 1314109 5.2 1218 659 Tu 1 . + CDS 1314137 - 1315138 924 ## COG1816 Adenosine deaminase - Term 1315196 - 1315230 -0.2 1219 660 Tu 1 . - CDS 1315240 - 1316280 1030 ## COG0673 Predicted dehydrogenases and related proteins - Prom 1316369 - 1316428 2.4 + Prom 1316359 - 1316418 1.6 1220 661 Tu 1 . + CDS 1316477 - 1316647 134 ## SARI_01519 hypothetical protein + Term 1316795 - 1316827 1.4 + Prom 1316860 - 1316919 3.4 1221 662 Op 1 . + CDS 1316939 - 1317154 200 ## G2583_2020 OriC-binding nucleoid-associated protein 1222 662 Op 2 . + CDS 1317204 - 1317686 514 ## SPC_2271 hypothetical protein + Term 1317708 - 1317755 3.2 1223 663 Op 1 12/0.017 + CDS 1317763 - 1318344 653 ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 1224 663 Op 2 10/0.031 + CDS 1318344 - 1318922 533 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 1225 663 Op 3 12/0.017 + CDS 1318915 - 1320939 1706 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 1226 663 Op 4 12/0.017 + CDS 1320940 - 1321992 991 ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 1227 663 Op 5 13/0.013 + CDS 1322002 - 1322622 636 ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 1228 663 Op 6 10/0.031 + CDS 1322626 - 1323318 913 ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 1229 663 Op 7 3/0.500 + CDS 1323318 - 1323953 418 ## COG0177 Predicted EndoIII-related endonuclease 1230 664 Tu 1 . + CDS 1324567 - 1326072 1751 ## COG3104 Dipeptide/tripeptide permease + Term 1326096 - 1326129 5.4 + Prom 1326095 - 1326154 4.1 1231 665 Tu 1 . + CDS 1326178 - 1326783 718 ## COG0625 Glutathione S-transferase - Term 1326779 - 1326829 1.6 1232 666 Op 1 5/0.226 - CDS 1326891 - 1327751 928 ## COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - Term 1327769 - 1327802 5.2 1233 666 Op 2 5/0.226 - CDS 1327816 - 1329090 829 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 1329155 - 1329214 2.4 - Term 1329158 - 1329194 -0.6 1234 667 Tu 1 3/0.500 - CDS 1329217 - 1329873 630 ## COG0259 Pyridoxamine-phosphate oxidase 1235 668 Op 1 3/0.500 - CDS 1329933 - 1330256 326 ## COG3895 Predicted periplasmic protein 1236 668 Op 2 . - CDS 1330350 - 1331471 894 ## COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases - Prom 1331682 - 1331741 3.8 + Prom 1331638 - 1331697 5.2 1237 669 Tu 1 . + CDS 1331746 - 1332213 444 ## COG3133 Outer membrane lipoprotein + Term 1332219 - 1332261 10.2 1238 670 Tu 1 . - CDS 1332259 - 1332699 314 ## COG1846 Transcriptional regulators - Prom 1332727 - 1332786 5.5 + Prom 1332691 - 1332750 10.7 1239 671 Op 1 . + CDS 1332892 - 1333128 187 ## ECUMN_1934 hypothetical protein 1240 671 Op 2 6/0.128 + CDS 1333218 - 1333994 767 ## COG1566 Multidrug resistance efflux pump 1241 671 Op 3 . + CDS 1333991 - 1336006 1401 ## COG1289 Predicted membrane protein - Term 1335899 - 1335923 -1.0 1242 672 Tu 1 3/0.500 - CDS 1336007 - 1336531 696 ## COG2032 Cu/Zn superoxide dismutase - Prom 1336551 - 1336610 1.9 1243 673 Op 1 4/0.402 - CDS 1336613 - 1337509 974 ## COG4989 Predicted oxidoreductase 1244 673 Op 2 . - CDS 1337559 - 1337864 111 ## COG3313 Predicted Fe-S protein + Prom 1337792 - 1337851 2.5 1245 674 Op 1 6/0.128 + CDS 1337900 - 1338499 612 ## COG1309 Transcriptional regulator 1246 674 Op 2 4/0.402 + CDS 1338554 - 1339651 1220 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family + Prom 1339653 - 1339712 4.9 1247 675 Op 1 7/0.082 + CDS 1339749 - 1340156 216 ## PROTEIN SUPPORTED gi|15900839|ref|NP_345443.1| lactoylglutathione lyase + Term 1340163 - 1340204 8.0 + Prom 1340164 - 1340223 2.7 1248 675 Op 2 . + CDS 1340251 - 1340898 628 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 1340907 - 1340951 8.4 - Term 1340903 - 1340932 2.1 1249 676 Tu 1 . - CDS 1340950 - 1341297 409 ## COG0278 Glutaredoxin-related protein - Prom 1341332 - 1341391 5.5 + Prom 1341522 - 1341581 5.8 1250 677 Op 1 . + CDS 1341704 - 1342462 366 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) + Term 1342466 - 1342508 9.1 + Prom 1342504 - 1342563 2.5 1251 677 Op 2 . + CDS 1342590 - 1343171 459 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 1343174 - 1343219 10.4 - Term 1343168 - 1343202 7.6 1252 678 Op 1 . - CDS 1343211 - 1344380 1254 ## COG2814 Arabinose efflux permease - Prom 1344424 - 1344483 3.9 1253 678 Op 2 . - CDS 1344557 - 1344646 154 ## - Prom 1344675 - 1344734 4.6 + Prom 1344718 - 1344777 4.7 1254 679 Tu 1 . + CDS 1344944 - 1345969 1071 ## COG1609 Transcriptional regulators + Term 1345974 - 1346016 6.4 1255 680 Tu 1 . - CDS 1345966 - 1346895 747 ## COG0583 Transcriptional regulator - Prom 1346924 - 1346983 5.2 1256 681 Tu 1 . + CDS 1347006 - 1348211 1169 ## COG0477 Permeases of the major facilitator superfamily + Term 1348215 - 1348257 -0.9 + Prom 1348230 - 1348289 6.6 1257 682 Tu 1 . + CDS 1348502 - 1349650 1071 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 1349659 - 1349690 3.1 1258 683 Tu 1 . - CDS 1349696 - 1350337 753 ## COG0307 Riboflavin synthase alpha chain - Prom 1350531 - 1350590 3.4 + Prom 1350414 - 1350473 4.2 1259 684 Tu 1 . + CDS 1350556 - 1351929 1546 ## COG0534 Na+-driven multidrug efflux pump + Term 1351940 - 1351967 1.5 - Term 1351928 - 1351955 1.5 1260 685 Tu 1 . - CDS 1351968 - 1352666 300 ## COG0564 Pseudouridylate synthases, 23S RNA-specific + Prom 1352713 - 1352772 1.7 1261 686 Op 1 . + CDS 1352801 - 1353592 544 ## COG0384 Predicted epimerase, PhzC/PhzF homolog 1262 686 Op 2 . + CDS 1353627 - 1353935 428 ## SPAB_04307 hypothetical protein + Term 1353951 - 1353979 3.7 + Prom 1354080 - 1354139 4.5 1263 687 Op 1 2/0.602 + CDS 1354173 - 1354568 285 ## COG0251 Putative translation initiation inhibitor, yjgF family 1264 687 Op 2 1/0.738 + CDS 1354596 - 1355564 814 ## COG1171 Threonine dehydratase + Term 1355572 - 1355604 4.0 + Prom 1355595 - 1355654 2.6 1265 688 Tu 1 . + CDS 1355688 - 1356329 497 ## COG2964 Uncharacterized protein conserved in bacteria + Term 1356465 - 1356508 0.3 + Prom 1356656 - 1356715 7.1 1266 689 Op 1 . + CDS 1356742 - 1357236 427 ## COG3915 Uncharacterized protein conserved in bacteria 1267 689 Op 2 . + CDS 1357254 - 1359182 1090 ## COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 1268 689 Op 3 . + CDS 1359256 - 1359732 337 ## COG0386 Glutathione peroxidase + Prom 1359862 - 1359921 7.2 1269 690 Op 1 . + CDS 1359983 - 1360699 637 ## COG0217 Uncharacterized conserved protein 1270 690 Op 2 . + CDS 1360659 - 1360850 104 ## + Prom 1360871 - 1360930 4.8 1271 691 Tu 1 . + CDS 1360954 - 1362063 1131 ## COG0628 Predicted permease + Term 1362075 - 1362118 11.1 + Prom 1362085 - 1362144 9.7 1272 692 Op 1 . + CDS 1362182 - 1363966 1573 ## COG2770 FOG: HAMP domain + Term 1364069 - 1364112 -0.9 + Prom 1364047 - 1364106 3.1 1273 692 Op 2 . + CDS 1364185 - 1365189 952 ## COG0180 Tryptophanyl-tRNA synthetase + TRNA 1366100 - 1366176 92.3 # Val GAC 0 0 + TRNA 1366181 - 1366257 96.8 # Val GAC 0 0 1274 693 Op 1 . + CDS 1366476 - 1368083 969 ## COG4529 Uncharacterized protein conserved in bacteria 1275 693 Op 2 . + CDS 1368088 - 1368810 750 ## COG0725 ABC-type molybdate transport system, periplasmic component 1276 694 Op 1 35/0.000 - CDS 1368773 - 1369549 575 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 1277 694 Op 2 33/0.000 - CDS 1369546 - 1370550 1068 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 1278 694 Op 3 1/0.738 - CDS 1370537 - 1371592 1036 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 1371620 - 1371679 8.0 - Term 1371703 - 1371748 6.9 1279 695 Tu 1 . - CDS 1371769 - 1373031 1326 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases - Prom 1373071 - 1373130 3.9 + Prom 1373050 - 1373109 3.7 1280 696 Tu 1 . + CDS 1373138 - 1374613 1185 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Term 1374605 - 1374649 2.7 1281 697 Op 1 . - CDS 1374657 - 1375865 1028 ## COG2010 Cytochrome c, mono- and diheme variants 1282 697 Op 2 . - CDS 1375869 - 1377761 1552 ## EbC_23290 twin-arginine translocation pathway signal 1283 697 Op 3 . - CDS 1377794 - 1379224 1046 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 1379257 - 1379316 7.5 1284 698 Op 1 . + CDS 1379538 - 1380263 421 ## COG2186 Transcriptional regulators 1285 698 Op 2 . + CDS 1380288 - 1380986 584 ## Entcl_3825 hypothetical protein + Term 1380987 - 1381012 -0.5 - Term 1380970 - 1381003 2.1 1286 699 Tu 1 . - CDS 1381007 - 1382488 1516 ## COG0531 Amino acid transporters - Prom 1382648 - 1382707 6.1 - Term 1382616 - 1382655 -0.9 1287 700 Op 1 2/0.602 - CDS 1382788 - 1383690 680 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1288 700 Op 2 . - CDS 1383690 - 1385402 1313 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 1289 700 Op 3 . - CDS 1385399 - 1386769 1046 ## COG0477 Permeases of the major facilitator superfamily 1290 700 Op 4 2/0.602 - CDS 1386798 - 1387451 438 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 1291 700 Op 5 . - CDS 1387438 - 1388343 568 ## COG3734 2-keto-3-deoxy-galactonokinase + Prom 1388454 - 1388513 4.5 1292 701 Op 1 . + CDS 1388536 - 1389267 602 ## COG2186 Transcriptional regulators + Prom 1389271 - 1389330 3.6 1293 701 Op 2 . + CDS 1389361 - 1389501 175 ## + Term 1389507 - 1389539 3.1 1294 702 Tu 1 . - CDS 1389553 - 1390446 596 ## COG0583 Transcriptional regulator - Prom 1390582 - 1390641 5.0 + Prom 1390541 - 1390600 5.2 1295 703 Op 1 16/0.000 + CDS 1390657 - 1391490 947 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 1296 703 Op 2 34/0.000 + CDS 1391492 - 1392310 308 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 1297 703 Op 3 17/0.000 + CDS 1392310 - 1393095 420 ## COG0765 ABC-type amino acid transport system, permease component 1298 703 Op 4 . + CDS 1393085 - 1393762 651 ## COG0765 ABC-type amino acid transport system, permease component - Term 1393641 - 1393674 2.0 1299 704 Op 1 . - CDS 1393772 - 1394584 350 ## CKO_01694 hypothetical protein 1300 704 Op 2 3/0.500 - CDS 1394588 - 1395373 571 ## COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) 1301 704 Op 3 . - CDS 1395370 - 1396038 400 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 1302 704 Op 4 . - CDS 1396103 - 1396768 529 ## CKO_01697 hypothetical protein 1303 704 Op 5 5/0.226 - CDS 1396779 - 1398881 2138 ## COG2414 Aldehyde:ferredoxin oxidoreductase - Prom 1398928 - 1398987 2.4 1304 705 Tu 1 . - CDS 1398993 - 1399619 216 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 - Term 1400048 - 1400084 1.4 1305 706 Op 1 . - CDS 1400098 - 1400307 242 ## ROD_13791 hypothetical protein - Prom 1400332 - 1400391 2.7 1306 706 Op 2 8/0.048 - CDS 1400400 - 1400984 456 ## COG4566 Response regulator 1307 706 Op 3 . - CDS 1400959 - 1402740 1537 ## COG0642 Signal transduction histidine kinase - Prom 1402825 - 1402884 2.6 + Prom 1402782 - 1402841 2.9 1308 707 Op 1 . + CDS 1402919 - 1403653 535 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 1309 707 Op 2 . + CDS 1403654 - 1404676 983 ## STM1384 tetrathionate reductase complex subunit C 1310 707 Op 3 . + CDS 1404669 - 1407734 2714 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing + Term 1407866 - 1407898 1.2 1311 708 Op 1 22/0.000 - CDS 1407827 - 1408639 1172 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 1312 708 Op 2 32/0.000 - CDS 1408661 - 1409329 854 ## COG2011 ABC-type metal ion transport system, permease component 1313 708 Op 3 . - CDS 1409322 - 1410344 955 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 1410397 - 1410456 2.6 + Prom 1410693 - 1410752 6.3 1314 709 Op 1 2/0.602 + CDS 1410853 - 1412079 893 ## COG0524 Sugar kinases, ribokinase family 1315 709 Op 2 2/0.602 + CDS 1412092 - 1412829 641 ## COG5426 Uncharacterized membrane protein + Term 1412840 - 1412875 6.0 1316 710 Op 1 2/0.602 + CDS 1412891 - 1413784 458 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 1317 710 Op 2 1/0.738 + CDS 1413805 - 1415148 1155 ## COG0531 Amino acid transporters + Term 1415195 - 1415228 4.5 + Prom 1415273 - 1415332 7.8 1318 711 Tu 1 . + CDS 1415562 - 1416974 1653 ## COG0469 Pyruvate kinase + Term 1416999 - 1417042 5.2 + Prom 1416996 - 1417055 7.0 1319 712 Tu 1 . + CDS 1417284 - 1417520 312 ## COG4238 Murein lipoprotein + Term 1417527 - 1417586 7.4 - Term 1417529 - 1417559 4.3 1320 713 Tu 1 . - CDS 1417589 - 1418593 952 ## COG1376 Uncharacterized protein conserved in bacteria 1321 714 Op 1 7/0.082 - CDS 1418717 - 1419133 415 ## COG2166 SufE protein probably involved in Fe-S center assembly 1322 714 Op 2 24/0.000 - CDS 1419146 - 1420366 1142 ## COG0520 Selenocysteine lyase 1323 714 Op 3 41/0.000 - CDS 1420363 - 1421634 1071 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 1324 714 Op 4 41/0.000 - CDS 1421609 - 1422355 854 ## COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component 1325 714 Op 5 3/0.500 - CDS 1422372 - 1423859 1556 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 1326 714 Op 6 . - CDS 1423868 - 1424236 403 ## COG0316 Uncharacterized conserved protein - Prom 1424269 - 1424328 4.1 - Term 1424590 - 1424637 7.3 1327 715 Tu 1 . - CDS 1424642 - 1428115 757 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 1428323 - 1428382 5.9 + Prom 1428993 - 1429052 6.2 1328 716 Op 1 . + CDS 1429110 - 1429730 241 ## XNC1_2312 hypothetical protein 1329 716 Op 2 . + CDS 1429736 - 1430332 115 ## gi|283833350|ref|ZP_06353091.1| hypothetical protein CIT292_07382 - Term 1430394 - 1430443 9.2 1330 717 Tu 1 . - CDS 1430584 - 1431447 676 ## COG0583 Transcriptional regulator - Prom 1431502 - 1431561 4.5 + Prom 1431485 - 1431544 5.9 1331 718 Tu 1 . + CDS 1431582 - 1432433 939 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Term 1432458 - 1432488 0.2 - Term 1432446 - 1432476 0.2 1332 719 Op 1 . - CDS 1432502 - 1432690 290 ## SSON_1471 hypothetical protein - Term 1432703 - 1432744 -0.8 1333 719 Op 2 6/0.128 - CDS 1432768 - 1433178 436 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 1334 719 Op 3 . - CDS 1433175 - 1436231 2578 ## COG0277 FAD/FMN-containing dehydrogenases - Prom 1436317 - 1436376 2.6 + Prom 1436264 - 1436323 5.1 1335 720 Tu 1 . + CDS 1436445 - 1437545 1309 ## COG0628 Predicted permease + Term 1437553 - 1437585 6.3 1336 721 Op 1 . + CDS 1437996 - 1438352 234 ## SeAg_B1810 putative cytoplasmic protein 1337 721 Op 2 21/0.000 + CDS 1438401 - 1439621 1259 ## COG0477 Permeases of the major facilitator superfamily + Prom 1439625 - 1439684 4.5 1338 721 Op 3 4/0.402 + CDS 1439860 - 1441095 1051 ## COG0477 Permeases of the major facilitator superfamily 1339 721 Op 4 8/0.048 + CDS 1441117 - 1441983 1095 ## COG0169 Shikimate 5-dehydrogenase 1340 721 Op 5 3/0.500 + CDS 1442020 - 1442778 828 ## COG0710 3-dehydroquinate dehydratase + Term 1442816 - 1442867 2.8 + Prom 1442821 - 1442880 5.1 1341 722 Op 1 . + CDS 1442933 - 1444528 1459 ## COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase 1342 722 Op 2 . + CDS 1444542 - 1445693 1381 ## COG1960 Acyl-CoA dehydrogenases - Term 1445682 - 1445731 2.0 1343 723 Tu 1 . - CDS 1445747 - 1446637 582 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 1446802 - 1446861 8.0 + Prom 1446932 - 1446991 4.7 1344 724 Op 1 29/0.000 + CDS 1447172 - 1447909 708 ## COG2086 Electron transfer flavoprotein, beta subunit 1345 724 Op 2 9/0.036 + CDS 1447931 - 1448866 867 ## COG2025 Electron transfer flavoprotein, alpha subunit 1346 724 Op 3 12/0.017 + CDS 1448922 - 1450211 1327 ## COG0644 Dehydrogenases (flavoproteins) 1347 724 Op 4 2/0.602 + CDS 1450208 - 1450501 323 ## COG2440 Ferredoxin-like protein 1348 724 Op 5 . + CDS 1450584 - 1452221 990 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 1452225 - 1452271 9.1 1349 725 Tu 1 . - CDS 1452317 - 1454695 2545 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - Prom 1454910 - 1454969 6.6 + Prom 1454766 - 1454825 8.7 1350 726 Op 1 . + CDS 1455024 - 1455857 740 ## COG1806 Uncharacterized protein conserved in bacteria + Term 1455889 - 1455931 -0.6 + Prom 1455859 - 1455918 1.9 1351 726 Op 2 . + CDS 1455983 - 1457029 900 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase + Term 1457035 - 1457080 9.3 + Prom 1457108 - 1457167 7.5 1352 727 Op 1 . + CDS 1457199 - 1457387 210 ## COG4256 Hemin uptake protein 1353 727 Op 2 4/0.402 + CDS 1457462 - 1459447 2243 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 1354 727 Op 3 4/0.402 + CDS 1459495 - 1460526 887 ## COG3720 Putative heme degradation protein 1355 727 Op 4 8/0.048 + CDS 1460523 - 1461344 752 ## COG4558 ABC-type hemin transport system, periplasmic component 1356 727 Op 5 10/0.031 + CDS 1461386 - 1462336 1009 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 1357 727 Op 6 . + CDS 1462329 - 1463108 232 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 1358 728 Op 1 4/0.402 - CDS 1463105 - 1464547 1362 ## COG0397 Uncharacterized conserved protein 1359 728 Op 2 5/0.226 - CDS 1464609 - 1465322 200 ## COG2200 FOG: EAL domain - Prom 1465457 - 1465516 4.2 - Term 1465581 - 1465633 4.1 1360 729 Op 1 4/0.402 - CDS 1465642 - 1466106 273 ## PROTEIN SUPPORTED gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 1361 729 Op 2 5/0.226 - CDS 1466184 - 1466921 494 ## COG4138 ABC-type cobalamin transport system, ATPase component 1362 729 Op 3 5/0.226 - CDS 1466933 - 1467484 531 ## COG0386 Glutathione peroxidase 1363 729 Op 4 4/0.402 - CDS 1467545 - 1468525 905 ## COG4139 ABC-type cobalamin transport system, permease component - Prom 1468687 - 1468746 4.9 - Term 1468579 - 1468607 2.1 1364 730 Op 1 13/0.013 - CDS 1468805 - 1469104 318 ## PROTEIN SUPPORTED gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35 1365 730 Op 2 40/0.000 - CDS 1469109 - 1471496 2867 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 1366 730 Op 3 13/0.013 - CDS 1471512 - 1472495 1320 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Term 1472857 - 1472900 10.4 1367 731 Op 1 46/0.000 - CDS 1472906 - 1473262 578 ## PROTEIN SUPPORTED gi|227332857|ref|ZP_03836513.1| hypothetical protein CIT292_02379 1368 731 Op 2 36/0.000 - CDS 1473313 - 1473525 358 ## PROTEIN SUPPORTED gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35 - Term 1473549 - 1473589 6.4 1369 731 Op 3 16/0.000 - CDS 1473607 - 1474083 655 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 1370 731 Op 4 . - CDS 1474153 - 1476081 2080 ## COG0441 Threonyl-tRNA synthetase - Prom 1476247 - 1476306 2.8 + Prom 1476095 - 1476154 6.0 1371 732 Tu 1 . + CDS 1476264 - 1476491 57 ## gi|291085452|ref|ZP_06571071.1| conserved hypothetical protein + Term 1476704 - 1476733 0.3 - Term 1476616 - 1476649 5.4 1372 733 Tu 1 . - CDS 1476657 - 1477415 630 ## COG3137 Putative salt-induced outer membrane protein - Prom 1477575 - 1477634 11.2 + Prom 1477534 - 1477593 5.5 1373 734 Op 1 . + CDS 1477703 - 1478632 901 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) + Term 1478642 - 1478676 4.0 + Prom 1478643 - 1478702 2.1 1374 734 Op 2 . + CDS 1478902 - 1479762 918 ## COG3001 Fructosamine-3-kinase + Term 1479772 - 1479817 9.1 1375 735 Tu 1 . - CDS 1479817 - 1480353 472 ## STM1323 regulatory protein - Prom 1480494 - 1480553 2.8 + Prom 1480387 - 1480446 4.8 1376 736 Tu 1 . + CDS 1480521 - 1481189 744 ## COG0637 Predicted phosphatase/phosphohexomutase + Term 1481199 - 1481231 3.2 + Prom 1481208 - 1481267 7.2 1377 737 Op 1 . + CDS 1481310 - 1482089 195 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 1482102 - 1482161 4.3 1378 737 Op 2 1/0.738 + CDS 1482185 - 1482772 424 ## COG1988 Predicted membrane-bound metal-dependent hydrolases 1379 738 Tu 1 . + CDS 1482908 - 1484299 1944 ## COG1823 Predicted Na+/dicarboxylate symporter + Term 1484324 - 1484360 3.1 - Term 1484305 - 1484356 4.7 1380 739 Tu 1 . - CDS 1484364 - 1484603 109 ## KP1_2271 cell division modulator - Prom 1484654 - 1484713 2.7 + Prom 1484710 - 1484769 2.9 1381 740 Tu 1 . + CDS 1484820 - 1487078 1967 ## COG0753 Catalase - Term 1487072 - 1487105 6.1 1382 741 Op 1 5/0.226 - CDS 1487116 - 1487874 609 ## COG3394 Uncharacterized protein conserved in bacteria 1383 741 Op 2 4/0.402 - CDS 1487887 - 1489242 1712 ## COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - Prom 1489292 - 1489351 2.6 1384 742 Op 1 5/0.226 - CDS 1489367 - 1490206 902 ## COG2207 AraC-type DNA-binding domain-containing proteins 1385 742 Op 2 13/0.013 - CDS 1490220 - 1490567 541 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 1386 742 Op 3 10/0.031 - CDS 1490621 - 1491979 1511 ## COG1455 Phosphotransferase system cellobiose-specific component IIC - Prom 1492003 - 1492062 3.3 - Term 1491985 - 1492017 3.3 1387 743 Tu 1 . - CDS 1492067 - 1492387 400 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 1492496 - 1492555 4.3 - Term 1492627 - 1492654 -0.9 1388 744 Tu 1 . - CDS 1492689 - 1493027 389 ## ECIAI39_1315 DNA-binding transcriptional activator OsmE - Prom 1493092 - 1493151 5.0 + Prom 1493141 - 1493200 5.8 1389 745 Tu 1 . + CDS 1493236 - 1494012 747 ## COG0171 NAD synthase + Term 1494082 - 1494127 3.3 + Prom 1494113 - 1494172 4.8 1390 746 Tu 1 . + CDS 1494194 - 1495081 475 ## COG0322 Nuclease subunit of the excinuclease complex - Term 1494774 - 1494816 0.6 1391 747 Tu 1 . - CDS 1495041 - 1495667 309 ## COG3758 Uncharacterized protein conserved in bacteria - Prom 1495688 - 1495747 2.5 - Term 1495831 - 1495892 7.2 1392 748 Tu 1 . - CDS 1495966 - 1496451 587 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein - Prom 1496574 - 1496633 5.1 - Term 1496564 - 1496604 -0.2 1393 749 Op 1 5/0.226 - CDS 1496802 - 1497767 994 ## COG2988 Succinylglutamate desuccinylase 1394 749 Op 2 7/0.082 - CDS 1497760 - 1499103 1228 ## COG3724 Succinylarginine dihydrolase 1395 749 Op 3 8/0.048 - CDS 1499100 - 1500578 1448 ## COG1012 NAD-dependent aldehyde dehydrogenases 1396 749 Op 4 7/0.082 - CDS 1500575 - 1501609 1186 ## COG3138 Arginine/ornithine N-succinyltransferase beta subunit 1397 749 Op 5 . - CDS 1501606 - 1502826 1293 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 1502853 - 1502912 8.8 1398 750 Tu 1 . + CDS 1503271 - 1504077 746 ## COG0708 Exonuclease III + Term 1504095 - 1504129 8.3 + Prom 1504175 - 1504234 2.8 1399 751 Op 1 2/0.602 + CDS 1504397 - 1504957 529 ## COG0398 Uncharacterized conserved protein 1400 751 Op 2 . + CDS 1504963 - 1505664 596 ## COG0398 Uncharacterized conserved protein 1401 751 Op 3 3/0.500 + CDS 1505696 - 1506865 1168 ## COG4134 ABC-type uncharacterized transport system, periplasmic component 1402 751 Op 4 3/0.500 + CDS 1506838 - 1508373 1467 ## COG4135 ABC-type uncharacterized transport system, permease component 1403 751 Op 5 1/0.738 + CDS 1508373 - 1509005 203 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 1509048 - 1509078 -0.6 + Prom 1509008 - 1509067 1.9 1404 751 Op 6 . + CDS 1509094 - 1510401 1459 ## COG2897 Rhodanese-related sulfurtransferase - Term 1510346 - 1510394 -0.9 1405 752 Op 1 . - CDS 1510502 - 1511125 649 ## COG0558 Phosphatidylglycerophosphate synthase 1406 752 Op 2 . - CDS 1511118 - 1511687 495 ## COG2128 Uncharacterized conserved protein - Prom 1511723 - 1511782 2.1 + Prom 1511682 - 1511741 2.4 1407 753 Tu 1 . + CDS 1511768 - 1512181 389 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Term 1512079 - 1512118 -1.0 1408 754 Tu 1 . - CDS 1512141 - 1512416 212 ## ROD_12981 hypothetical protein - Prom 1512441 - 1512500 4.4 + Prom 1512529 - 1512588 4.6 1409 755 Tu 1 . + CDS 1512654 - 1513997 1696 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Term 1514094 - 1514129 4.1 - Term 1513835 - 1513868 0.5 1410 756 Op 1 5/0.226 - CDS 1514088 - 1516031 1828 ## COG0550 Topoisomerase IA 1411 756 Op 2 6/0.128 - CDS 1516036 - 1517079 1464 ## COG0709 Selenophosphate synthase - Prom 1517101 - 1517160 2.3 1412 757 Tu 1 . - CDS 1517196 - 1517747 593 ## COG0778 Nitroreductase - Prom 1517773 - 1517832 3.2 + Prom 1517705 - 1517764 3.9 1413 758 Tu 1 . + CDS 1517923 - 1519779 2013 ## COG0616 Periplasmic serine proteases (ClpP class) + Term 1519788 - 1519821 6.1 1414 759 Op 1 . - CDS 1519776 - 1520930 539 ## COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 1415 759 Op 2 . - CDS 1520864 - 1521799 438 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1521858 - 1521917 2.9 + Prom 1521913 - 1521972 3.7 1416 760 Op 1 2/0.602 + CDS 1522000 - 1523016 915 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 1417 760 Op 2 . + CDS 1523030 - 1523668 814 ## COG1335 Amidases related to nicotinamidase + Term 1523673 - 1523712 8.2 1418 761 Tu 1 . - CDS 1523706 - 1525064 895 ## COG0477 Permeases of the major facilitator superfamily - Prom 1525111 - 1525170 5.3 - Term 1525167 - 1525201 1.2 1419 762 Tu 1 . - CDS 1525205 - 1525963 561 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 1525997 - 1526056 2.6 1420 763 Op 1 2/0.602 - CDS 1526099 - 1527082 958 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1421 763 Op 2 4/0.402 - CDS 1527092 - 1528039 876 ## COG0524 Sugar kinases, ribokinase family 1422 763 Op 3 3/0.500 - CDS 1528044 - 1528880 953 ## COG0191 Fructose/tagatose bisphosphate aldolase 1423 763 Op 4 7/0.082 - CDS 1528905 - 1529948 1063 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 1424 763 Op 5 7/0.082 - CDS 1529966 - 1531345 1085 ## COG0477 Permeases of the major facilitator superfamily 1425 763 Op 6 . - CDS 1531372 - 1532448 1123 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 1532479 - 1532538 4.1 + Prom 1532453 - 1532512 4.9 1426 764 Op 1 . + CDS 1532745 - 1533998 1333 ## COG3325 Chitinase + Term 1534039 - 1534075 7.1 1427 764 Op 2 . + CDS 1534092 - 1534436 372 ## ROD_12761 putative endonuclease 1428 765 Op 1 3/0.500 - CDS 1534480 - 1534755 388 ## COG3139 Uncharacterized protein conserved in bacteria 1429 765 Op 2 . - CDS 1534798 - 1535211 285 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase + Prom 1535455 - 1535514 4.5 1430 766 Op 1 4/0.402 + CDS 1535553 - 1536548 1100 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 1536574 - 1536603 2.1 1431 766 Op 2 . + CDS 1536624 - 1537508 792 ## COG0676 Uncharacterized enzymes related to aldose 1-epimerase + Term 1537625 - 1537671 3.4 - Term 1537499 - 1537562 12.2 1432 767 Tu 1 . - CDS 1537617 - 1538471 865 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 1538542 - 1538601 3.7 - Term 1538579 - 1538618 7.1 1433 768 Op 1 . - CDS 1538650 - 1539000 265 ## gi|283833454|ref|ZP_06353195.1| conserved hypothetical protein 1434 768 Op 2 . - CDS 1539011 - 1539238 154 ## YE1871 putative lipoprotein - Prom 1539422 - 1539481 6.1 - Term 1539784 - 1539813 1.2 1435 769 Tu 1 . - CDS 1539836 - 1540582 933 ## COG3713 Outer membrane protein V - Prom 1540612 - 1540671 2.5 + Prom 1540800 - 1540859 3.6 1436 770 Op 1 12/0.017 + CDS 1541016 - 1542950 2141 ## COG2766 Putative Ser protein kinase 1437 770 Op 2 4/0.402 + CDS 1543042 - 1544355 950 ## PROTEIN SUPPORTED gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34 + Term 1544365 - 1544402 8.7 + Prom 1544425 - 1544484 3.0 1438 771 Op 1 2/0.602 + CDS 1544611 - 1545999 1024 ## COG2199 FOG: GGDEF domain 1439 771 Op 2 . + CDS 1546044 - 1546547 553 ## COG2606 Uncharacterized conserved protein + Prom 1546608 - 1546667 4.3 1440 772 Tu 1 . + CDS 1546687 - 1547133 594 ## COG2707 Predicted membrane protein + Term 1547152 - 1547185 2.0 1441 773 Tu 1 . - CDS 1547117 - 1547908 739 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 1547932 - 1547991 5.8 + Prom 1547883 - 1547942 2.0 1442 774 Tu 1 . + CDS 1548017 - 1549195 713 ## COG2807 Cyanate permease + Term 1549202 - 1549242 2.7 - Term 1549185 - 1549231 0.2 1443 775 Tu 1 . - CDS 1549234 - 1549941 679 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 1549967 - 1550026 3.0 + Prom 1550005 - 1550064 7.0 1444 776 Tu 1 . + CDS 1550140 - 1550487 345 ## COG3189 Uncharacterized conserved protein + Term 1550550 - 1550575 -0.8 1445 777 Tu 1 . - CDS 1550495 - 1550746 134 ## COG3042 Putative hemolysin - Prom 1550832 - 1550891 4.2 + Prom 1550783 - 1550842 5.2 1446 778 Tu 1 . + CDS 1550932 - 1551957 757 ## COG2203 FOG: GAF domain 1447 779 Tu 1 . - CDS 1553031 - 1553279 397 ## COG2261 Predicted membrane protein - Prom 1553322 - 1553381 6.2 + Prom 1553554 - 1553613 3.3 1448 780 Tu 1 . + CDS 1553642 - 1555789 1902 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing + Term 1555804 - 1555843 9.1 1449 781 Tu 1 . - CDS 1555841 - 1556485 582 ## CKO_01822 hypothetical protein - Prom 1556632 - 1556691 7.3 - Term 1556615 - 1556655 -0.7 1450 782 Op 1 . - CDS 1556705 - 1556887 310 ## CKO_01823 hypothetical protein 1451 782 Op 2 4/0.402 - CDS 1556891 - 1557253 300 ## COG3615 Uncharacterized protein/domain, possibly involved in tellurite resistance - Prom 1557329 - 1557388 3.9 - Term 1557384 - 1557421 4.4 1452 783 Tu 1 . - CDS 1557426 - 1558064 613 ## COG1280 Putative threonine efflux protein - Prom 1558104 - 1558163 3.5 - Term 1558149 - 1558176 1.5 1453 784 Tu 1 . - CDS 1558202 - 1558756 493 ## COG3443 Predicted periplasmic or secreted protein - Prom 1558847 - 1558906 6.1 - Term 1558843 - 1558882 1.0 1454 785 Op 1 2/0.602 - CDS 1558927 - 1559532 202 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 1455 785 Op 2 13/0.013 - CDS 1559516 - 1560310 538 ## COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase 1456 785 Op 3 49/0.000 - CDS 1560304 - 1561116 671 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1457 785 Op 4 38/0.000 - CDS 1561106 - 1562080 740 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1458 785 Op 5 . - CDS 1562080 - 1563666 1634 ## COG0747 ABC-type dipeptide transport system, periplasmic component + Prom 1564009 - 1564068 8.0 1459 786 Tu 1 . + CDS 1564097 - 1566184 2166 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins + Prom 1566365 - 1566424 6.6 1460 787 Tu 1 . + CDS 1566538 - 1566816 187 ## ETA_07070 lipoprotein + Term 1566820 - 1566864 10.3 - Term 1566806 - 1566852 11.5 1461 788 Op 1 . - CDS 1566995 - 1567201 169 ## gi|291085496|ref|ZP_06353223.2| conserved hypothetical protein - Prom 1567258 - 1567317 1.8 1462 788 Op 2 . - CDS 1567369 - 1568892 518 ## COG2200 FOG: EAL domain - Prom 1569011 - 1569070 4.3 + Prom 1568990 - 1569049 3.9 1463 789 Tu 1 . + CDS 1569267 - 1569806 116 ## COG3038 Cytochrome B561 + Prom 1569921 - 1569980 7.6 1464 790 Tu 1 . + CDS 1570009 - 1570251 179 ## EFER_0437 virulence protein MsgA, DinI-like family + Term 1570297 - 1570350 -0.7 - Term 1570341 - 1570387 7.8 1465 791 Tu 1 . - CDS 1570404 - 1571654 1566 ## COG0538 Isocitrate dehydrogenases + Prom 1571775 - 1571834 7.4 1466 792 Op 1 . + CDS 1571856 - 1572473 384 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 1467 792 Op 2 . + CDS 1572517 - 1573446 710 ## ESA_01756 hypothetical protein 1468 792 Op 3 6/0.128 + CDS 1573456 - 1573917 257 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 1469 792 Op 4 4/0.402 + CDS 1573971 - 1575077 1252 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 1470 792 Op 5 9/0.036 + CDS 1575112 - 1575753 676 ## COG2915 Uncharacterized protein involved in purine metabolism 1471 792 Op 6 . + CDS 1575757 - 1577127 1653 ## COG0015 Adenylosuccinate lyase + Term 1577170 - 1577217 0.2 1472 793 Tu 1 . - CDS 1577229 - 1581248 2740 ## ESA_00987 hypothetical protein - Prom 1581366 - 1581425 6.9 + Prom 1582363 - 1582422 5.9 1473 794 Op 1 40/0.000 + CDS 1582447 - 1583067 646 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 1474 794 Op 2 2/0.602 + CDS 1583119 - 1584582 1208 ## COG0642 Signal transduction histidine kinase + Term 1584603 - 1584645 0.7 + Prom 1584589 - 1584648 5.5 1475 795 Tu 1 . + CDS 1584674 - 1585795 1206 ## COG2850 Uncharacterized conserved protein 1476 796 Tu 1 . - CDS 1585898 - 1587124 1538 ## COG2195 Di- and tripeptidases - Prom 1587290 - 1587349 3.9 + Prom 1587249 - 1587308 3.5 1477 797 Op 1 30/0.000 + CDS 1587393 - 1588511 1065 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 1478 797 Op 2 36/0.000 + CDS 1588522 - 1589352 1095 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 1479 797 Op 3 25/0.000 + CDS 1589349 - 1590128 878 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 1480 797 Op 4 . + CDS 1590156 - 1591202 1609 ## COG0687 Spermidine/putrescine-binding periplasmic protein - Term 1591172 - 1591208 -0.3 1481 798 Op 1 5/0.226 - CDS 1591304 - 1592125 731 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 1482 798 Op 2 5/0.226 - CDS 1592141 - 1593073 987 ## COG1940 Transcriptional regulator/sugar kinase 1483 798 Op 3 23/0.000 - CDS 1593102 - 1594346 1270 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 1484 798 Op 4 2/0.602 - CDS 1594346 - 1594663 286 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 1485 798 Op 5 23/0.000 - CDS 1594686 - 1595048 447 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 1486 798 Op 6 . - CDS 1595041 - 1596240 1308 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component - Prom 1596397 - 1596456 5.6 + Prom 1596231 - 1596290 1.9 1487 799 Tu 1 . + CDS 1596502 - 1597566 856 ## COG4763 Predicted membrane protein + Term 1597580 - 1597615 4.9 + Prom 1597582 - 1597641 2.7 1488 800 Tu 1 . + CDS 1597685 - 1601131 3828 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) + Prom 1601174 - 1601233 4.0 1489 801 Tu 1 . + CDS 1601279 - 1602244 770 ## COG1376 Uncharacterized protein conserved in bacteria + Term 1602255 - 1602308 11.9 - Term 1602249 - 1602289 6.0 1490 802 Tu 1 . - CDS 1602331 - 1602588 347 ## ECO103_1157 hypothetical protein - Prom 1602696 - 1602755 8.1 + Prom 1602680 - 1602739 12.1 1491 803 Tu 1 . + CDS 1602832 - 1603467 404 ## COG1309 Transcriptional regulator + Term 1603503 - 1603535 4.1 + Prom 1603571 - 1603630 7.6 1492 804 Tu 1 . + CDS 1603716 - 1605896 2554 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Term 1605891 - 1605931 4.0 1493 805 Tu 1 . - CDS 1605954 - 1606493 649 ## COG3134 Predicted outer membrane lipoprotein - Prom 1606518 - 1606577 2.4 - Term 1606609 - 1606650 5.6 1494 806 Tu 1 . - CDS 1606662 - 1607966 1506 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 1607998 - 1608057 7.8 - Term 1608145 - 1608187 5.2 1495 807 Op 1 2/0.602 - CDS 1608202 - 1608744 695 ## COG3150 Predicted esterase 1496 807 Op 2 . - CDS 1608766 - 1609791 944 ## COG1472 Beta-glucosidase-related glycosidases 1497 808 Op 1 6/0.128 - CDS 1610607 - 1611248 610 ## COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family) 1498 808 Op 2 4/0.402 - CDS 1611262 - 1611636 236 ## COG5633 Predicted periplasmic lipoprotein 1499 808 Op 3 . - CDS 1611639 - 1611998 440 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 1612061 - 1612120 2.6 1500 809 Tu 1 . - CDS 1612238 - 1612861 422 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 1612944 - 1613003 4.4 + Prom 1612903 - 1612962 4.8 1501 810 Tu 1 . + CDS 1613116 - 1613718 343 ## COG1309 Transcriptional regulator 1502 811 Tu 1 . - CDS 1613732 - 1614628 292 ## COG0583 Transcriptional regulator - Prom 1614724 - 1614783 1.8 + Prom 1614623 - 1614682 5.1 1503 812 Tu 1 . + CDS 1614734 - 1615549 705 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - TRNA 1615911 - 1615986 87.1 # Asn GTT 0 0 - Term 1615941 - 1615979 -0.8 1504 813 Tu 1 . - CDS 1616086 - 1617540 1127 ## COG0534 Na+-driven multidrug efflux pump - Prom 1617753 - 1617812 80.1 + TRNA 1617735 - 1617810 87.1 # Asn GTT 0 0 + Prom 1617735 - 1617794 80.4 1505 814 Tu 1 . + CDS 1617998 - 1618117 81 ## COG0582 Integrase 1506 815 Tu 1 . - CDS 1618145 - 1618711 139 ## gi|283833527|ref|ZP_06353268.1| conserved hypothetical protein - Prom 1618742 - 1618801 5.0 - Term 1619163 - 1619187 -1.0 1507 816 Op 1 . - CDS 1619249 - 1619422 85 ## 1508 816 Op 2 . - CDS 1619394 - 1620200 159 ## gi|291085518|ref|ZP_06353270.2| conserved hypothetical protein 1509 816 Op 3 . - CDS 1620288 - 1620758 79 ## Ctu_19390 hypothetical protein - Prom 1620786 - 1620845 3.4 1510 817 Tu 1 . + CDS 1620673 - 1620897 110 ## + Term 1620917 - 1620948 2.4 1511 818 Tu 1 . - CDS 1620966 - 1622270 209 ## YPTB3598 hypothetical protein - Prom 1622297 - 1622356 6.7 1512 819 Tu 1 . - CDS 1622416 - 1622961 325 ## AXYL_05524 hypothetical protein - Prom 1622986 - 1623045 3.1 1513 820 Tu 1 . - CDS 1623070 - 1624032 -4 ## gi|283833533|ref|ZP_06353274.1| conserved hypothetical protein - Prom 1624054 - 1624113 3.6 1514 821 Tu 1 . - CDS 1624447 - 1624749 120 ## Ctu_35740 hypothetical protein + Prom 1624691 - 1624750 4.4 1515 822 Tu 1 . + CDS 1624911 - 1625711 536 ## ROD_20821 putative lipoprotein + Prom 1626336 - 1626395 1.8 1516 823 Tu 1 . + CDS 1626527 - 1627021 275 ## COG1032 Fe-S oxidoreductase 1517 824 Op 1 . - CDS 1627018 - 1627608 550 ## ROD_20831 hypothetical protein 1518 824 Op 2 . - CDS 1627565 - 1628209 414 ## COG0671 Membrane-associated phospholipid phosphatase 1519 824 Op 3 . - CDS 1628216 - 1629559 670 ## COG1032 Fe-S oxidoreductase 1520 824 Op 4 . - CDS 1629556 - 1630839 753 ## COG1032 Fe-S oxidoreductase 1521 824 Op 5 . - CDS 1630863 - 1631888 329 ## ROD_20871 hypothetical protein 1522 824 Op 6 . - CDS 1631888 - 1633234 960 ## COG1032 Fe-S oxidoreductase 1523 824 Op 7 . - CDS 1633238 - 1634626 903 ## COG1032 Fe-S oxidoreductase 1524 824 Op 8 . - CDS 1634633 - 1636159 671 ## ROD_20901 hypothetical protein 1525 824 Op 9 . - CDS 1636152 - 1636868 384 ## ROD_20911 hypothetical protein - Prom 1636963 - 1637022 8.4 - Term 1636960 - 1637010 0.2 1526 825 Tu 1 . - CDS 1637024 - 1637380 189 ## ROD_20921 hypothetical protein 1527 826 Tu 1 . - CDS 1638056 - 1642624 2624 ## ESA_00987 hypothetical protein - Prom 1642667 - 1642726 7.6 + Prom 1643770 - 1643829 6.8 1528 827 Tu 1 . + CDS 1643855 - 1644541 148 ## Entcl_0627 hypothetical protein - Term 1644709 - 1644737 2.1 1529 828 Tu 1 . - CDS 1644762 - 1645052 85 ## ECS88_3285 hypothetical protein - Prom 1645276 - 1645335 3.6 1530 829 Tu 1 . + CDS 1646269 - 1646520 185 ## gi|291085527|ref|ZP_06353292.2| late histone H1 + Term 1646538 - 1646570 4.6 - Term 1646423 - 1646458 2.4 1531 830 Op 1 . - CDS 1646622 - 1647611 543 ## Ctu_30590 hypothetical protein 1532 830 Op 2 5/0.226 - CDS 1647632 - 1648402 615 ## COG4676 Uncharacterized protein conserved in bacteria 1533 830 Op 3 4/0.402 - CDS 1648408 - 1650054 1102 ## COG5445 Predicted secreted protein 1534 830 Op 4 3/0.500 - CDS 1650058 - 1654683 4266 ## COG2373 Large extracellular alpha-helical protein 1535 830 Op 5 2/0.602 - CDS 1654617 - 1655285 395 ## COG3234 Uncharacterized protein conserved in bacteria 1536 830 Op 6 . - CDS 1655270 - 1656964 1262 ## COG4685 Uncharacterized protein conserved in bacteria 1537 830 Op 7 . - CDS 1657027 - 1657515 477 ## HCH_06499 hypothetical protein - Prom 1657538 - 1657597 6.8 1538 831 Op 1 . - CDS 1657624 - 1658250 135 ## gi|283833559|ref|ZP_06353300.1| conserved hypothetical protein 1539 831 Op 2 2/0.602 - CDS 1658337 - 1659536 903 ## COG2755 Lysophospholipase L1 and related esterases 1540 831 Op 3 4/0.402 - CDS 1659543 - 1660646 616 ## COG2845 Uncharacterized protein conserved in bacteria 1541 831 Op 4 . - CDS 1660633 - 1662036 1117 ## COG1696 Predicted membrane protein involved in D-alanine export - Prom 1662137 - 1662196 4.4 - Term 1662597 - 1662655 1.1 1542 832 Op 1 9/0.036 - CDS 1662806 - 1663774 995 ## COG0583 Transcriptional regulator 1543 832 Op 2 . - CDS 1663858 - 1664775 758 ## COG0583 Transcriptional regulator + TRNA 1665103 - 1665178 87.1 # Asn GTT 0 0 + Prom 1665103 - 1665162 80.4 1544 833 Op 1 . + CDS 1665344 - 1666609 375 ## PROTEIN SUPPORTED gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 + Prom 1667011 - 1667070 6.1 1545 833 Op 2 4/0.402 + CDS 1667096 - 1668292 905 ## COG0477 Permeases of the major facilitator superfamily 1546 833 Op 3 . + CDS 1668342 - 1669565 676 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 1547 833 Op 4 . + CDS 1669643 - 1670488 303 ## PFL_2139 hypothetical protein 1548 833 Op 5 . + CDS 1670548 - 1671441 291 ## COG2513 PEP phosphonomutase and related enzymes + Prom 1671655 - 1671714 3.4 1549 834 Op 1 . + CDS 1671743 - 1672207 194 ## YPTB1664 hypothetical protein 1550 834 Op 2 . + CDS 1672201 - 1672527 232 ## SG2035 hypothetical protein 1551 834 Op 3 . + CDS 1672546 - 1673031 339 ## COG3157 Hemolysin-coregulated protein (uncharacterized) + Term 1673038 - 1673082 3.0 1552 835 Op 1 . + CDS 1673834 - 1674511 512 ## gi|283833573|ref|ZP_06353314.1| hypothetical protein CIT292_07643 1553 835 Op 2 . + CDS 1674524 - 1674727 319 ## Entcl_4051 hypothetical protein + Term 1674789 - 1674835 8.3 + Prom 1675256 - 1675315 1.5 1554 836 Tu 1 . + CDS 1675540 - 1676406 667 ## COG0582 Integrase + Prom 1676408 - 1676467 4.4 1555 837 Op 1 . + CDS 1676569 - 1676928 107 ## gi|283833577|ref|ZP_06353318.1| hypothetical protein CIT292_07648 1556 837 Op 2 . + CDS 1676937 - 1677158 57 ## gi|283833578|ref|ZP_06353319.1| conserved hypothetical protein + Term 1677173 - 1677203 2.0 + Prom 1677661 - 1677720 4.6 1557 838 Tu 1 . + CDS 1677740 - 1678216 54 ## Alvin_2533 hypothetical protein + Term 1678223 - 1678255 2.3 1558 839 Tu 1 . - CDS 1678653 - 1680056 225 ## Shewana3_3856 hypothetical protein - Prom 1680169 - 1680228 2.5 + Prom 1682160 - 1682219 7.6 1559 840 Tu 1 . + CDS 1682445 - 1686881 2342 ## ESA_00987 hypothetical protein + Term 1687083 - 1687126 4.4 - Term 1686840 - 1686871 -0.8 1560 841 Tu 1 . - CDS 1687005 - 1687613 263 ## KPK_2631 transcriptional regulator, LuxR family 1561 842 Tu 1 . - CDS 1687768 - 1688367 377 ## COG3121 P pilus assembly protein, chaperone PapD 1562 843 Op 1 . - CDS 1688493 - 1689839 689 ## Rmet_1664 hypothetical protein 1563 843 Op 2 10/0.031 - CDS 1689855 - 1692506 1356 ## COG3188 P pilus assembly protein, porin PapC 1564 843 Op 3 7/0.082 - CDS 1692559 - 1692909 115 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 1692959 - 1693018 4.0 - Term 1693312 - 1693348 5.1 1565 844 Tu 1 . - CDS 1693357 - 1693896 176 ## COG3539 P pilus assembly protein, pilin FimA - Prom 1693923 - 1693982 2.9 + Prom 1694277 - 1694336 5.4 1566 845 Op 1 . + CDS 1694377 - 1695042 193 ## KPK_2637 cyclic nucleotide-binding domain protein + Prom 1695053 - 1695112 3.8 1567 845 Op 2 . + CDS 1695141 - 1695779 271 ## ECL_02384 hypothetical protein 1568 846 Tu 1 . - CDS 1696052 - 1696438 279 ## COG0438 Glycosyltransferase - Prom 1696572 - 1696631 3.3 + Prom 1696321 - 1696380 2.7 1569 847 Tu 1 . + CDS 1696572 - 1697042 -174 ## 1570 848 Tu 1 . - CDS 1697485 - 1698252 289 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 1698418 - 1698477 5.4 - Term 1698322 - 1698381 -0.4 1571 849 Tu 1 . - CDS 1698506 - 1698778 155 ## ECL_04312 hypothetical protein - Prom 1698800 - 1698859 3.4 + Prom 1699402 - 1699461 10.9 1572 850 Op 1 . + CDS 1699708 - 1702158 1057 ## ECL_04313 biofilm PGA synthesis protein PgaA 1573 850 Op 2 6/0.128 + CDS 1702167 - 1704182 988 ## COG0726 Predicted xylanase/chitin deacetylase 1574 850 Op 3 . + CDS 1704175 - 1705506 660 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 1575 850 Op 4 . + CDS 1705503 - 1705967 169 ## ECL_04316 biofilm PGA synthesis protein PgaD + Term 1705997 - 1706028 1.8 1576 851 Tu 1 . + CDS 1707082 - 1707768 383 ## Entcl_0627 hypothetical protein + Term 1707878 - 1707914 1.2 + Prom 1707980 - 1708039 7.1 1577 852 Op 1 . + CDS 1708228 - 1710969 2569 ## COG3468 Type V secretory pathway, adhesin AidA + Term 1710987 - 1711021 6.1 1578 852 Op 2 . + CDS 1711039 - 1711602 306 ## gi|291085556|ref|ZP_06353341.2| conserved hypothetical protein + Term 1711700 - 1711729 -0.9 - Term 1711657 - 1711692 4.0 1579 853 Tu 1 . - CDS 1711859 - 1712068 62 ## - Prom 1712183 - 1712242 6.7 1580 854 Tu 1 . + CDS 1713106 - 1714422 1612 ## COG0477 Permeases of the major facilitator superfamily + Term 1714428 - 1714467 9.1 + Prom 1714448 - 1714507 4.5 1581 855 Op 1 . + CDS 1714540 - 1715994 1423 ## COG0775 Nucleoside phosphorylase 1582 855 Op 2 . + CDS 1716010 - 1717788 1694 ## COG0006 Xaa-Pro aminopeptidase + Term 1717801 - 1717830 2.8 - Term 1717788 - 1717818 3.0 1583 856 Tu 1 . - CDS 1717844 - 1719277 1521 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 1719507 - 1719566 4.3 - Term 1719566 - 1719598 -0.8 1584 857 Op 1 10/0.031 - CDS 1719694 - 1720491 820 ## COG0084 Mg-dependent DNase 1585 857 Op 2 22/0.000 - CDS 1720502 - 1721506 702 ## COG0470 ATPase involved in DNA replication 1586 857 Op 3 10/0.031 - CDS 1721503 - 1722144 669 ## COG0125 Thymidylate kinase 1587 857 Op 4 6/0.128 - CDS 1722134 - 1723156 1151 ## COG1559 Predicted periplasmic solute-binding protein 1588 857 Op 5 5/0.226 - CDS 1723159 - 1723968 391 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 1723988 - 1724047 5.2 - Term 1724029 - 1724067 5.3 1589 858 Op 1 27/0.000 - CDS 1724105 - 1725346 1245 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase - Term 1725387 - 1725420 6.1 1590 858 Op 2 22/0.000 - CDS 1725432 - 1725668 455 ## COG0236 Acyl carrier protein - Prom 1725707 - 1725766 4.9 1591 858 Op 3 26/0.000 - CDS 1725824 - 1726558 260 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 1592 858 Op 4 14/0.011 - CDS 1726571 - 1727500 1053 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 1593 858 Op 5 16/0.000 - CDS 1727516 - 1728469 871 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 1594 858 Op 6 14/0.011 - CDS 1728547 - 1729596 560 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 1595 859 Op 1 20/0.000 - CDS 1729749 - 1729922 291 ## PROTEIN SUPPORTED gi|227332625|ref|ZP_03836281.1| hypothetical protein CIT292_02120 1596 859 Op 2 . - CDS 1729939 - 1730460 390 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 1730605 - 1730664 4.7 + Prom 1730569 - 1730628 5.2 1597 860 Tu 1 . + CDS 1730658 - 1731242 502 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation - Term 1731257 - 1731300 -0.6 1598 861 Tu 1 . - CDS 1731375 - 1732370 186 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 1732429 - 1732488 2.8 1599 862 Tu 1 . + CDS 1732903 - 1736154 2996 ## COG1530 Ribonucleases G and E + Term 1736173 - 1736203 3.0 - Term 1736071 - 1736126 2.3 1600 863 Tu 1 . - CDS 1736180 - 1737094 685 ## COG0583 Transcriptional regulator + Prom 1737078 - 1737137 4.0 1601 864 Tu 1 . + CDS 1737242 - 1738441 1347 ## COG0477 Permeases of the major facilitator superfamily - Term 1738433 - 1738477 1.0 1602 865 Op 1 21/0.000 - CDS 1738517 - 1739470 1178 ## COG1344 Flagellin and related hook-associated proteins 1603 865 Op 2 9/0.036 - CDS 1739485 - 1741113 1409 ## COG1256 Flagellar hook-associated protein 1604 865 Op 3 7/0.082 - CDS 1741202 - 1742152 1037 ## COG3951 Rod binding protein 1605 865 Op 4 9/0.036 - CDS 1742152 - 1743249 1083 ## COG1706 Flagellar basal-body P-ring protein 1606 865 Op 5 9/0.036 - CDS 1743262 - 1743960 601 ## COG2063 Flagellar basal body L-ring protein - Term 1743968 - 1744012 6.4 1607 866 Op 1 8/0.048 - CDS 1744018 - 1744800 1013 ## COG4786 Flagellar basal body rod protein 1608 866 Op 2 8/0.048 - CDS 1744814 - 1745569 740 ## COG4787 Flagellar basal body rod protein 1609 866 Op 3 16/0.000 - CDS 1745590 - 1746825 1489 ## COG1749 Flagellar hook protein FlgE 1610 866 Op 4 9/0.036 - CDS 1746852 - 1747550 891 ## COG1843 Flagellar hook capping protein 1611 866 Op 5 24/0.000 - CDS 1747562 - 1747966 451 ## COG1558 Flagellar basal body rod protein 1612 866 Op 6 . - CDS 1747970 - 1748386 346 ## COG1815 Flagellar basal body protein + Prom 1748459 - 1748518 4.5 1613 867 Op 1 8/0.048 + CDS 1748544 - 1749203 550 ## COG1261 Flagellar basal body P-ring biosynthesis protein 1614 867 Op 2 7/0.082 + CDS 1749296 - 1749589 330 ## COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor) 1615 867 Op 3 . + CDS 1749593 - 1750015 513 ## COG3418 Flagellar biosynthesis/type III secretory pathway chaperone + Term 1750054 - 1750096 4.3 1616 868 Tu 1 5/0.226 - CDS 1750093 - 1751628 1021 ## PROTEIN SUPPORTED gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 - Prom 1751764 - 1751823 5.7 1617 869 Op 1 4/0.402 - CDS 1751870 - 1752793 776 ## COG0673 Predicted dehydrogenases and related proteins 1618 869 Op 2 5/0.226 - CDS 1752795 - 1753442 686 ## COG3132 Uncharacterized protein conserved in bacteria 1619 869 Op 3 . - CDS 1753475 - 1754059 1009 ## PROTEIN SUPPORTED gi|16764523|ref|NP_460138.1| ribosomal-protein-S5-alanine N-acetyltransferase - Prom 1754159 - 1754218 5.4 + Prom 1754132 - 1754191 2.9 1620 870 Tu 1 . + CDS 1754376 - 1755527 1386 ## COG0477 Permeases of the major facilitator superfamily 1621 871 Tu 1 . + CDS 1755642 - 1756202 761 ## CKO_02000 hypothetical protein + Term 1756210 - 1756241 3.2 + Prom 1756214 - 1756273 2.6 1622 872 Op 1 . + CDS 1756308 - 1757354 956 ## COG0418 Dihydroorotase 1623 872 Op 2 . + CDS 1757420 - 1757665 331 ## CKO_02002 hypothetical protein + Term 1757692 - 1757719 1.5 + Prom 1757737 - 1757796 6.7 1624 873 Tu 1 . + CDS 1758004 - 1758261 194 ## CKO_02005 biofilm formation regulatory protein BssS + Term 1758286 - 1758316 1.0 + Prom 1758294 - 1758353 2.4 1625 874 Op 1 . + CDS 1758376 - 1759494 940 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 1759500 - 1759536 3.6 1626 874 Op 2 . + CDS 1759547 - 1759660 122 ## + Prom 1759791 - 1759850 5.3 1627 875 Op 1 12/0.017 + CDS 1759924 - 1760490 383 ## COG3038 Cytochrome B561 1628 875 Op 2 . + CDS 1760492 - 1761067 731 ## COG2353 Uncharacterized conserved protein + Term 1761077 - 1761124 8.2 - Term 1761056 - 1761106 -0.4 1629 876 Tu 1 . - CDS 1761115 - 1762167 811 ## COG1054 Predicted sulfurtransferase - Prom 1762239 - 1762298 4.8 + Prom 1762203 - 1762262 4.4 1630 877 Tu 1 . + CDS 1762387 - 1763307 818 ## COG1560 Lauroyl/myristoyl acyltransferase + Term 1763311 - 1763352 8.9 + Prom 1763351 - 1763410 3.7 1631 878 Tu 1 . + CDS 1763463 - 1764683 1172 ## COG0477 Permeases of the major facilitator superfamily + Term 1764692 - 1764749 3.3 1632 879 Tu 1 . - CDS 1764748 - 1765605 282 ## COG2199 FOG: GGDEF domain - Prom 1765774 - 1765833 3.9 + Prom 1766664 - 1766723 2.5 1633 880 Tu 1 . + CDS 1766756 - 1767148 511 ## SARI_01845 hypothetical protein 1634 881 Tu 1 . - CDS 1767149 - 1767349 188 ## COG5645 Predicted periplasmic lipoprotein - Prom 1767389 - 1767448 6.9 - Term 1767398 - 1767436 6.2 1635 882 Op 1 7/0.082 - CDS 1767451 - 1769949 2683 ## COG2943 Membrane glycosyltransferase 1636 882 Op 2 . - CDS 1769972 - 1771507 1495 ## COG3131 Periplasmic glucans biosynthesis protein - Prom 1771565 - 1771624 4.0 + Prom 1771509 - 1771568 2.3 1637 883 Tu 1 . + CDS 1771778 - 1772938 813 ## CKO_02020 glucans biosynthesis protein + Term 1773003 - 1773045 2.1 1638 884 Op 1 2/0.602 - CDS 1772959 - 1774380 1118 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 1639 884 Op 2 . - CDS 1774382 - 1774924 169 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 - Prom 1774948 - 1775007 3.6 1640 885 Tu 1 . - CDS 1775025 - 1775345 193 ## CKO_02023 hypothetical protein - Term 1775409 - 1775453 -1.0 1641 886 Tu 1 . - CDS 1775497 - 1775829 251 ## SARI_01853 putative autoagglutination protein - Term 1775838 - 1775866 1.0 1642 887 Op 1 . - CDS 1775891 - 1776340 344 ## SARI_01854 cryptic curlin major subunit 1643 887 Op 2 . - CDS 1776381 - 1776863 235 ## CKO_02026 curlin minor subunit - Prom 1776946 - 1777005 4.9 + Prom 1777354 - 1777413 11.3 1644 888 Op 1 . + CDS 1777597 - 1778247 446 ## COG2771 DNA-binding HTH domain-containing proteins 1645 888 Op 2 . + CDS 1778252 - 1778644 96 ## CKO_02030 curli assembly protein CsgE 1646 888 Op 3 . + CDS 1778700 - 1779083 282 ## ROD_10961 curli production assembly/transport component 1647 888 Op 4 . + CDS 1779109 - 1779942 681 ## COG1462 Uncharacterized protein involved in formation of curli polymers + Term 1779955 - 1780000 6.9 - Term 1779951 - 1779982 4.1 1648 889 Tu 1 . - CDS 1779987 - 1780469 564 ## SG1984 hypothetical protein 1649 890 Op 1 5/0.226 - CDS 1780571 - 1781125 701 ## COG3381 Uncharacterized component of anaerobic dehydrogenases 1650 890 Op 2 3/0.500 - CDS 1781149 - 1781886 688 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family - Prom 1781908 - 1781967 3.0 - Term 1782064 - 1782091 1.5 1651 891 Tu 1 . - CDS 1782098 - 1783036 812 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + TRNA 1783272 - 1783359 68.6 # Ser GGA 0 0 1652 892 Tu 1 . - CDS 1783880 - 1784470 299 ## PROTEIN SUPPORTED gi|227375595|ref|ZP_03859062.1| acetyltransferase, ribosomal protein N-acetylase - Prom 1784603 - 1784662 3.0 + Prom 1784531 - 1784590 2.9 1653 893 Tu 1 . + CDS 1784828 - 1785151 140 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides 1654 894 Op 1 3/0.500 - CDS 1785504 - 1786094 255 ## COG1335 Amidases related to nicotinamidase 1655 894 Op 2 . - CDS 1786129 - 1787334 791 ## COG0477 Permeases of the major facilitator superfamily - Prom 1787362 - 1787421 3.8 + Prom 1787275 - 1787334 2.3 1656 895 Tu 1 . + CDS 1787381 - 1788070 95 ## COG1802 Transcriptional regulators + Term 1788147 - 1788184 1.3 1657 896 Tu 1 . - CDS 1788198 - 1788896 489 ## COG0431 Predicted flavoprotein - Prom 1788942 - 1789001 6.8 + Prom 1788875 - 1788934 3.9 1658 897 Op 1 7/0.082 + CDS 1788985 - 1789305 131 ## COG0640 Predicted transcriptional regulators 1659 897 Op 2 2/0.602 + CDS 1789349 - 1790638 1119 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 1660 897 Op 3 . + CDS 1790651 - 1791076 560 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 1791095 - 1791137 2.8 1661 898 Tu 1 . - CDS 1791367 - 1791981 -58 ## EAMY_0569 hypothetical protein - Prom 1792063 - 1792122 3.3 1662 899 Tu 1 . + CDS 1792671 - 1793324 353 ## COG1280 Putative threonine efflux protein + Prom 1793404 - 1793463 3.2 1663 900 Tu 1 . + CDS 1793512 - 1794363 41 ## PC1_2708 hypothetical protein + Term 1794460 - 1794496 -0.9 + Prom 1794369 - 1794428 4.3 1664 901 Tu 1 . + CDS 1794583 - 1795068 62 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 1795198 - 1795234 2.2 1665 902 Tu 1 . - CDS 1795255 - 1795674 218 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 1795704 - 1795763 7.5 1666 903 Tu 1 . - CDS 1795885 - 1796742 265 ## COG4757 Predicted alpha/beta hydrolase - Prom 1796882 - 1796941 5.1 + Prom 1796856 - 1796915 3.6 1667 904 Tu 1 . + CDS 1796970 - 1797242 155 ## COG2076 Membrane transporters of cations and cationic drugs 1668 905 Tu 1 . - CDS 1797290 - 1797451 93 ## gi|291085595|ref|ZP_06571121.1| hypothetical protein CIT292_07772 + Prom 1797439 - 1797498 1.7 1669 906 Tu 1 . + CDS 1797518 - 1797970 273 ## COG2801 Transposase and inactivated derivatives + Prom 1798070 - 1798129 6.0 1670 907 Tu 1 . + CDS 1798259 - 1798429 132 ## SC3412 putative outer membrane lipoprotein + Term 1798530 - 1798568 1.2 1671 908 Op 1 . - CDS 1798535 - 1799116 44 ## COG2091 Phosphopantetheinyl transferase 1672 908 Op 2 . - CDS 1799138 - 1800262 878 ## ECED1_3624 putative DNA-binding transcriptional regulator - Prom 1800393 - 1800452 5.0 + Prom 1800422 - 1800481 4.2 1673 909 Op 1 2/0.602 + CDS 1800567 - 1802300 940 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1674 909 Op 2 . + CDS 1802297 - 1803217 470 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 1675 909 Op 3 . + CDS 1803268 - 1803507 225 ## EbC_37150 putative acyl carrier protein 1676 909 Op 4 . + CDS 1803494 - 1804666 975 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes + Term 1804679 - 1804715 3.9 - Term 1804666 - 1804703 4.1 1677 910 Op 1 22/0.000 - CDS 1804734 - 1805816 608 ## COG0795 Predicted permeases 1678 910 Op 2 . - CDS 1805813 - 1806883 516 ## COG0795 Predicted permeases 1679 910 Op 3 . - CDS 1806944 - 1807267 247 ## COG3054 Predicted transcriptional regulator - Prom 1807294 - 1807353 5.3 1680 911 Op 1 . - CDS 1807539 - 1808366 535 ## E2348C_3269 hypothetical protein 1681 911 Op 2 . - CDS 1808359 - 1809699 793 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 1809773 - 1809832 7.7 1682 912 Op 1 . - CDS 1809859 - 1810614 530 ## JW2952 hypothetical protein with nucleoside triphosphate hydrolase domain 1683 912 Op 2 . - CDS 1810669 - 1811385 21 ## ECP_3070 ATP-binding site; other site - Prom 1811516 - 1811575 4.9 + Prom 1811413 - 1811472 5.2 1684 913 Tu 1 . + CDS 1811547 - 1812272 366 ## ECUMN_3470 hypothetical protein + Term 1812294 - 1812329 7.2 1685 914 Tu 1 . - CDS 1812343 - 1813842 711 ## COG0306 Phosphate/sulphate permeases - Prom 1813995 - 1814054 4.6 - Term 1814433 - 1814481 17.7 1686 915 Op 1 7/0.082 - CDS 1814500 - 1817019 3324 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 1687 915 Op 2 . - CDS 1817029 - 1818192 1224 ## COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit - Prom 1818259 - 1818318 3.0 1688 916 Op 1 9/0.036 - CDS 1818418 - 1819284 815 ## COG4235 Cytochrome c biogenesis factor 1689 916 Op 2 10/0.031 - CDS 1819281 - 1819748 552 ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes 1690 916 Op 3 11/0.025 - CDS 1819745 - 1820302 722 ## COG0526 Thiol-disulfide isomerase and thioredoxins 1691 916 Op 4 16/0.000 - CDS 1820299 - 1822254 2499 ## COG1138 Cytochrome c biogenesis factor 1692 916 Op 5 9/0.036 - CDS 1822251 - 1822727 620 ## COG2332 Cytochrome c-type biogenesis protein CcmE 1693 916 Op 6 9/0.036 - CDS 1822724 - 1822945 327 ## COG3114 Heme exporter protein D 1694 916 Op 7 14/0.011 - CDS 1822942 - 1823688 789 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 1695 916 Op 8 14/0.011 - CDS 1823725 - 1824384 840 ## COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component 1696 916 Op 9 . - CDS 1824381 - 1825004 379 ## COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component - Prom 1825044 - 1825103 6.5 + Prom 1825283 - 1825342 4.3 1697 917 Tu 1 . + CDS 1825371 - 1825664 321 ## COG2350 Uncharacterized protein conserved in bacteria - Term 1825668 - 1825695 1.5 1698 918 Op 1 . - CDS 1825715 - 1826503 715 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 1699 918 Op 2 . - CDS 1826482 - 1826778 145 ## gi|291085604|ref|ZP_06571122.1| protein PhoH - Prom 1826949 - 1827008 9.3 - Term 1826988 - 1827019 3.1 1700 919 Op 1 9/0.036 - CDS 1827027 - 1828310 1236 ## COG2837 Predicted iron-dependent peroxidase 1701 919 Op 2 7/0.082 - CDS 1828316 - 1829443 1505 ## COG2822 Predicted periplasmic lipoprotein involved in iron transport 1702 919 Op 3 1/0.738 - CDS 1829502 - 1830335 1018 ## COG0672 High-affinity Fe2+/Pb2+ permease - Prom 1830411 - 1830470 4.7 1703 920 Tu 1 . - CDS 1831080 - 1832588 1885 ## COG0591 Na+/proline symporter + Prom 1832855 - 1832914 5.1 1704 921 Tu 1 . + CDS 1833011 - 1836973 4627 ## COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase + Term 1837052 - 1837101 14.1 + Prom 1837071 - 1837130 5.5 1705 922 Tu 1 . + CDS 1837162 - 1837557 289 ## COG3755 Uncharacterized protein conserved in bacteria - Term 1837349 - 1837389 4.0 1706 923 Tu 1 . - CDS 1837554 - 1838192 769 ## COG1309 Transcriptional regulator - Prom 1838213 - 1838272 3.4 - Term 1838278 - 1838310 4.1 1707 924 Tu 1 . - CDS 1838379 - 1838552 97 ## COG3729 General stress protein - Prom 1838788 - 1838847 5.7 + Prom 1838771 - 1838830 7.8 1708 925 Op 1 . + CDS 1838938 - 1839534 705 ## COG0655 Multimeric flavodoxin WrbA 1709 925 Op 2 . + CDS 1839555 - 1839782 352 ## t1802 hypothetical protein + Term 1839791 - 1839824 4.4 - Term 1839748 - 1839804 -1.0 1710 926 Tu 1 . - CDS 1839821 - 1841062 1405 ## SSON_1012 glucose-1-phosphatase/inositol phosphatase 1711 927 Op 1 1/0.738 - CDS 1841150 - 1841857 545 ## COG0640 Predicted transcriptional regulators 1712 927 Op 2 . - CDS 1841926 - 1842681 753 ## COG0730 Predicted permeases - Prom 1842748 - 1842807 2.1 - Term 1842780 - 1842810 3.0 1713 928 Op 1 2/0.602 - CDS 1842817 - 1843323 500 ## COG0526 Thiol-disulfide isomerase and thioredoxins 1714 928 Op 2 1/0.738 - CDS 1843313 - 1843936 887 ## COG1651 Protein-disulfide isomerase 1715 928 Op 3 . - CDS 1843933 - 1845813 1607 ## COG4232 Thiol:disulfide interchange protein 1716 928 Op 4 . - CDS 1845862 - 1846224 279 ## SG1002 copper-sensitivity suppressor membrane protein A - Prom 1846244 - 1846303 5.6 + Prom 1846356 - 1846415 1.7 1717 929 Op 1 . + CDS 1846472 - 1847392 1114 ## COG2214 DnaJ-class molecular chaperone 1718 929 Op 2 . + CDS 1847392 - 1847685 431 ## CKO_02067 chaperone-modulator protein CbpM + Term 1847770 - 1847819 11.0 - Term 1847758 - 1847805 13.1 1719 930 Op 1 2/0.602 - CDS 1847808 - 1849085 1362 ## COG2010 Cytochrome c, mono- and diheme variants 1720 930 Op 2 . - CDS 1849099 - 1850778 1630 ## COG2303 Choline dehydrogenase and related flavoproteins 1721 930 Op 3 . - CDS 1850781 - 1851506 590 ## ROD_10561 putative gluconate dehydrogenase subunit - Prom 1851614 - 1851673 5.8 - TRNA 1851944 - 1852031 76.4 # Ser TGA 0 0 - Term 1852087 - 1852143 0.4 1722 931 Tu 1 . - CDS 1852174 - 1853802 1534 ## COG4166 ABC-type oligopeptide transport system, periplasmic component - Prom 1853948 - 1854007 2.8 + Prom 1853932 - 1853991 3.2 1723 932 Op 1 2/0.602 + CDS 1854072 - 1854731 890 ## COG0670 Integral membrane protein, interacts with FtsH + Term 1854753 - 1854782 3.5 + Prom 1854736 - 1854795 2.9 1724 932 Op 2 . + CDS 1854820 - 1855149 516 ## COG2920 Dissimilatory sulfite reductase (desulfoviridin), gamma subunit - Term 1855103 - 1855139 1.4 1725 933 Tu 1 . - CDS 1855146 - 1855427 238 ## COG1254 Acylphosphatases - Prom 1855511 - 1855570 2.2 + Prom 1855433 - 1855492 2.0 1726 934 Op 1 3/0.500 + CDS 1855522 - 1856712 585 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative + Term 1856730 - 1856760 -0.4 1727 934 Op 2 . + CDS 1856770 - 1857087 395 ## COG3785 Uncharacterized conserved protein + Term 1857125 - 1857157 -1.0 - Term 1857025 - 1857076 0.1 1728 935 Tu 1 . - CDS 1857146 - 1857559 577 ## COG1832 Predicted CoA-binding protein - Prom 1857654 - 1857713 3.0 + Prom 1857593 - 1857652 2.4 1729 936 Op 1 3/0.500 + CDS 1857732 - 1858394 468 ## COG3110 Uncharacterized protein conserved in bacteria + Prom 1858407 - 1858466 3.4 1730 936 Op 2 . + CDS 1858488 - 1858946 460 ## COG1803 Methylglyoxal synthase + Term 1858954 - 1858988 4.6 - Term 1858817 - 1858857 -0.6 1731 937 Tu 1 . - CDS 1858979 - 1861033 1592 ## COG0210 Superfamily I DNA and RNA helicases - Prom 1861104 - 1861163 4.6 + Prom 1861068 - 1861127 3.1 1732 938 Op 1 5/0.226 + CDS 1861159 - 1861605 422 ## COG3304 Predicted membrane protein 1733 938 Op 2 . + CDS 1861624 - 1863777 1488 ## COG1289 Predicted membrane protein + Term 1863796 - 1863841 2.4 1734 939 Tu 1 . - CDS 1863755 - 1864369 444 ## COG3070 Regulator of competence-specific genes - Prom 1864424 - 1864483 5.6 + Prom 1864422 - 1864481 4.2 1735 940 Tu 1 . + CDS 1864715 - 1865095 412 ## COG5404 SOS-response cell division inhibitor, blocks FtsZ ring formation + Prom 1865239 - 1865298 12.3 1736 941 Tu 1 . + CDS 1865453 - 1866511 971 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins + Term 1866521 - 1866567 5.3 - Term 1866517 - 1866545 2.1 1737 942 Tu 1 . - CDS 1866603 - 1867055 398 ## COG3120 Uncharacterized protein conserved in bacteria - Prom 1867081 - 1867140 4.3 + Prom 1867154 - 1867213 5.3 1738 943 Op 1 8/0.048 + CDS 1867241 - 1869001 1527 ## COG1067 Predicted ATP-dependent protease 1739 943 Op 2 . + CDS 1869070 - 1869588 773 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 1869660 - 1869697 9.1 - Term 1870065 - 1870107 9.1 1740 944 Op 1 8/0.048 - CDS 1870129 - 1870692 512 ## COG3009 Uncharacterized protein conserved in bacteria 1741 944 Op 2 11/0.025 - CDS 1870689 - 1872329 1739 ## COG3008 Paraquat-inducible protein B 1742 944 Op 3 5/0.226 - CDS 1872334 - 1873587 805 ## COG2995 Uncharacterized paraquat-inducible protein A 1743 944 Op 4 6/0.128 - CDS 1873603 - 1875510 2119 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 1744 944 Op 5 . - CDS 1875523 - 1877631 2425 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 1877658 - 1877717 7.5 + Prom 1877473 - 1877532 3.6 1745 945 Tu 1 . + CDS 1877772 - 1878836 719 ## COG3217 Uncharacterized Fe-S protein + Term 1878852 - 1878895 1.3 1746 946 Tu 1 . - CDS 1878833 - 1879375 669 ## CKO_02122 hypothetical protein - Prom 1879438 - 1879497 4.1 - Term 1879481 - 1879525 3.0 1747 947 Tu 1 . - CDS 1879541 - 1880551 1045 ## COG0167 Dihydroorotate dehydrogenase - Prom 1880741 - 1880800 7.3 1748 948 Tu 1 . + CDS 1880495 - 1880635 60 ## gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729 + Prom 1880696 - 1880755 3.7 1749 949 Op 1 4/0.402 + CDS 1880794 - 1881369 803 ## COG0431 Predicted flavoprotein 1750 949 Op 2 5/0.226 + CDS 1881362 - 1882336 870 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 1751 949 Op 3 8/0.048 + CDS 1882333 - 1883478 1189 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 1752 949 Op 4 24/0.000 + CDS 1883489 - 1884280 948 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 1753 949 Op 5 . + CDS 1884277 - 1885044 268 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Term 1885093 - 1885121 1.0 1754 950 Tu 1 . - CDS 1885116 - 1887728 3087 ## COG0308 Aminopeptidase N - Prom 1887946 - 1888005 2.1 + Prom 1887790 - 1887849 4.9 1755 951 Tu 1 . + CDS 1888058 - 1889197 1103 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 1889206 - 1889236 2.6 + Prom 1889247 - 1889306 6.2 1756 952 Tu 1 . + CDS 1889363 - 1890763 1594 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 1890822 - 1890868 0.9 + Prom 1891307 - 1891366 7.5 1757 953 Op 1 . + CDS 1891525 - 1892598 1398 ## COG3203 Outer membrane protein (porin) + Term 1892630 - 1892657 0.1 + Prom 1892688 - 1892747 5.2 1758 953 Op 2 . + CDS 1892782 - 1893972 1092 ## COG1448 Aspartate/tyrosine/aromatic aminotransferase + Term 1893985 - 1894025 6.5 - Term 1893979 - 1894006 1.5 1759 954 Op 1 7/0.082 - CDS 1894023 - 1894670 756 ## COG0491 Zn-dependent hydrolases, including glyoxylases 1760 954 Op 2 9/0.036 - CDS 1894699 - 1895247 435 ## COG3108 Uncharacterized protein conserved in bacteria - Prom 1895362 - 1895421 3.9 1761 955 Tu 1 4/0.402 - CDS 1895425 - 1897176 1426 ## COG2989 Uncharacterized protein conserved in bacteria - Prom 1897367 - 1897426 5.8 - Term 1897394 - 1897436 9.8 1762 956 Op 1 8/0.048 - CDS 1897437 - 1901897 5561 ## COG3096 Uncharacterized protein involved in chromosome partitioning 1763 956 Op 2 7/0.082 - CDS 1901897 - 1902601 746 ## COG3095 Uncharacterized protein involved in chromosome partitioning 1764 956 Op 3 6/0.128 - CDS 1902582 - 1903904 1543 ## COG3006 Uncharacterized protein involved in chromosome partitioning 1765 956 Op 4 . - CDS 1903897 - 1904700 615 ## COG0500 SAM-dependent methyltransferases - Prom 1904739 - 1904798 2.5 + Prom 1904613 - 1904672 2.6 1766 957 Tu 1 . + CDS 1904836 - 1905600 865 ## COG1434 Uncharacterized conserved protein 1767 958 Tu 1 . - CDS 1905694 - 1906587 837 ## SeAg_B0995 hypothetical protein - Prom 1906613 - 1906672 2.4 1768 959 Op 1 11/0.025 - CDS 1906751 - 1907497 962 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase 1769 959 Op 2 4/0.402 - CDS 1907494 - 1907676 187 ## COG2835 Uncharacterized conserved protein 1770 959 Op 3 4/0.402 - CDS 1907728 - 1908960 895 ## COG3214 Uncharacterized protein conserved in bacteria - Term 1908965 - 1908999 -0.7 1771 959 Op 4 9/0.036 - CDS 1909002 - 1909979 490 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase 1772 959 Op 5 5/0.226 - CDS 1909976 - 1911724 280 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 1773 959 Op 6 2/0.602 - CDS 1911761 - 1914025 933 ## COG0658 Predicted membrane metal-binding protein - Prom 1914154 - 1914213 2.1 - Term 1914168 - 1914209 7.2 1774 960 Op 1 16/0.000 - CDS 1914232 - 1914516 331 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 1914585 - 1914644 2.1 - Term 1914552 - 1914581 3.5 1775 960 Op 2 21/0.000 - CDS 1914801 - 1916474 2785 ## PROTEIN SUPPORTED gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 - Prom 1916527 - 1916586 1.6 - Term 1916529 - 1916565 4.5 1776 960 Op 3 3/0.500 - CDS 1916588 - 1917271 256 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 - Prom 1917308 - 1917367 5.0 1777 961 Tu 1 . - CDS 1917443 - 1918204 739 ## COG0501 Zn-dependent protease with chaperone function - Prom 1918224 - 1918283 6.2 1778 962 Op 1 6/0.128 - CDS 1918343 - 1919626 1535 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase - Term 1919645 - 1919678 4.1 1779 962 Op 2 4/0.402 - CDS 1919696 - 1920748 1048 ## COG1932 Phosphoserine aminotransferase - Prom 1920875 - 1920934 2.4 1780 963 Tu 1 . - CDS 1920998 - 1921690 630 ## COG2323 Predicted membrane protein - Prom 1921715 - 1921774 2.4 + Prom 1921527 - 1921586 2.2 1781 964 Tu 1 . + CDS 1921826 - 1923586 2181 ## COG1944 Uncharacterized conserved protein + Term 1923638 - 1923670 4.5 + Prom 1923772 - 1923831 8.5 1782 965 Op 1 7/0.082 + CDS 1923991 - 1924848 746 ## COG2116 Formate/nitrite family of transporters 1783 965 Op 2 11/0.025 + CDS 1924908 - 1927190 2544 ## COG1882 Pyruvate-formate lyase + Term 1927233 - 1927264 3.2 + Prom 1927234 - 1927293 4.8 1784 966 Tu 1 . + CDS 1927376 - 1928116 950 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 1928139 - 1928183 7.2 - Term 1928191 - 1928230 9.1 1785 967 Tu 1 . - CDS 1928258 - 1931389 2451 ## ESA_00987 hypothetical protein - Prom 1931509 - 1931568 6.5 - Term 1932301 - 1932344 2.3 1786 968 Tu 1 . - CDS 1932439 - 1933587 1218 ## COG0477 Permeases of the major facilitator superfamily - Prom 1933719 - 1933778 6.8 - Term 1933757 - 1933801 -0.9 1787 969 Op 1 9/0.036 - CDS 1934013 - 1934876 897 ## COG3302 DMSO reductase anchor subunit 1788 969 Op 2 16/0.000 - CDS 1934878 - 1935495 556 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 1789 969 Op 3 2/0.602 - CDS 1935506 - 1937950 2471 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 1937975 - 1938034 5.8 - Term 1938110 - 1938135 -0.5 1790 970 Op 1 8/0.048 - CDS 1938158 - 1939450 1641 ## COG0172 Seryl-tRNA synthetase - Term 1939511 - 1939542 -1.0 1791 970 Op 2 8/0.048 - CDS 1939543 - 1940886 1081 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase 1792 970 Op 3 10/0.031 - CDS 1940897 - 1941508 755 ## COG2834 Outer membrane lipoprotein-sorting protein 1793 971 Tu 1 . - CDS 1941620 - 1945558 3743 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Term 1945593 - 1945636 10.6 1794 972 Tu 1 . - CDS 1945693 - 1946187 493 ## COG1522 Transcriptional regulators + Prom 1946646 - 1946705 5.6 1795 973 Tu 1 . + CDS 1946734 - 1947702 717 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 1947733 - 1947761 2.3 + Prom 1947721 - 1947780 4.5 1796 974 Op 1 14/0.011 + CDS 1947817 - 1949583 1550 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 1797 974 Op 2 5/0.226 + CDS 1949584 - 1951305 1788 ## COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components 1798 974 Op 3 5/0.226 + CDS 1951350 - 1952054 398 ## COG2360 Leu/Phe-tRNA-protein transferase + Term 1952213 - 1952277 12.2 + Prom 1952245 - 1952304 3.4 1799 975 Tu 1 . + CDS 1952340 - 1952558 261 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 + Term 1952596 - 1952624 1.4 1800 976 Tu 1 . - CDS 1952639 - 1953550 645 ## COG0583 Transcriptional regulator - Prom 1953576 - 1953635 6.0 1801 977 Op 1 2/0.602 + CDS 1953659 - 1954519 862 ## COG1741 Pirin-related protein 1802 977 Op 2 . + CDS 1954536 - 1955213 808 ## COG1335 Amidases related to nicotinamidase + Term 1955459 - 1955500 8.1 + TRNA 1955363 - 1955450 68.6 # Ser GGA 0 0 + Prom 1955770 - 1955829 2.5 1803 978 Tu 1 . + CDS 1955916 - 1958585 2017 ## ESA_00983 hypothetical protein + Prom 1959239 - 1959298 4.4 1804 979 Tu 1 . + CDS 1959401 - 1960276 366 ## Bcenmc03_4705 HvnC; halovibrin + Term 1960329 - 1960371 6.1 + Prom 1961101 - 1961160 8.5 1805 980 Op 1 . + CDS 1961408 - 1962067 386 ## COG0583 Transcriptional regulator 1806 980 Op 2 . + CDS 1962119 - 1962286 63 ## gi|291085640|ref|ZP_06353572.2| conserved hypothetical protein 1807 981 Tu 1 . - CDS 1962648 - 1963001 124 ## ESA_00988 hypothetical protein - Prom 1963034 - 1963093 1.5 + Prom 1962938 - 1962997 2.4 1808 982 Tu 1 . + CDS 1963017 - 1963244 88 ## 1809 983 Tu 1 . - CDS 1963145 - 1963402 99 ## Ent638_0792 hypothetical protein - Prom 1963441 - 1963500 3.0 1810 984 Op 1 . - CDS 1963752 - 1964375 386 ## Ent638_0794 hypothetical protein 1811 984 Op 2 . - CDS 1964359 - 1965225 118 ## Ent638_0793 hypothetical protein 1812 984 Op 3 . - CDS 1965259 - 1965420 74 ## - Term 1965468 - 1965515 6.1 1813 985 Tu 1 . - CDS 1965521 - 1969840 2557 ## ESA_00987 hypothetical protein - Prom 1969980 - 1970039 5.8 - Term 1970603 - 1970647 -0.8 1814 986 Tu 1 . - CDS 1970653 - 1971306 460 ## Entcl_0627 hypothetical protein - Prom 1971356 - 1971415 7.5 1815 987 Op 1 . + CDS 1972289 - 1973308 926 ## ESA_00986 hypothetical protein 1816 987 Op 2 . + CDS 1973363 - 1975423 586 ## ESA_00985 hypothetical protein + Prom 1975514 - 1975573 2.0 1817 988 Tu 1 . + CDS 1975596 - 1976072 348 ## SARI_00646 hypothetical protein + Term 1976249 - 1976286 -0.3 + Prom 1976182 - 1976241 5.9 1818 989 Tu 1 . + CDS 1976302 - 1976955 249 ## ESA_00985 hypothetical protein + Term 1977070 - 1977109 -0.6 1819 990 Tu 1 . - CDS 1977071 - 1978198 1197 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 1978267 - 1978326 4.0 1820 991 Tu 1 . - CDS 1978335 - 1978751 372 ## CKO_02248 hypothetical protein - Term 1978816 - 1978853 8.0 1821 992 Op 1 36/0.000 - CDS 1978883 - 1979728 808 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 1822 992 Op 2 30/0.000 - CDS 1979725 - 1980678 1096 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 1823 992 Op 3 13/0.013 - CDS 1980688 - 1981821 1337 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components - Term 1981899 - 1981945 6.3 1824 993 Tu 1 . - CDS 1981960 - 1983072 1273 ## COG0687 Spermidine/putrescine-binding periplasmic protein - Prom 1983319 - 1983378 3.6 - Term 1983437 - 1983484 8.0 1825 994 Op 1 . - CDS 1983506 - 1983982 496 ## CKO_02254 hypothetical protein - Prom 1984003 - 1984062 3.5 1826 994 Op 2 4/0.402 - CDS 1984073 - 1984975 1490 ## PROTEIN SUPPORTED gi|237781815|ref|YP_002848762.1| ribosomal protein S6 modification protein 1827 994 Op 3 . - CDS 1985035 - 1985757 786 ## COG0778 Nitroreductase 1828 994 Op 4 . - CDS 1985741 - 1986031 323 ## SPAB_02616 hypothetical protein + Prom 1986108 - 1986167 3.2 1829 995 Tu 1 . + CDS 1986204 - 1986467 393 ## COG0695 Glutaredoxin and related proteins 1830 996 Tu 1 . - CDS 1986502 - 1986900 82 ## SARI_02059 hypothetical protein - Prom 1987148 - 1987207 4.0 + Prom 1986988 - 1987047 2.4 1831 997 Tu 1 . + CDS 1987152 - 1988837 1859 ## COG2985 Predicted permease + Term 1988946 - 1989002 -0.8 1832 998 Tu 1 . + CDS 1989812 - 1990330 0 ## ECB_00840 hypothetical protein + Term 1990446 - 1990482 -0.7 + Prom 1990868 - 1990927 6.4 1833 999 Tu 1 . + CDS 1990960 - 1991454 35 ## gi|291085647|ref|ZP_06353597.2| conserved hypothetical protein - Term 1991557 - 1991594 0.5 1834 1000 Tu 1 . - CDS 1991697 - 1992611 247 ## PROTEIN SUPPORTED gi|42631297|ref|ZP_00156835.1| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 1992670 - 1992729 6.1 + Prom 1992617 - 1992676 2.0 1835 1001 Tu 1 . + CDS 1992714 - 1993628 427 ## PROTEIN SUPPORTED gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 - Term 1993533 - 1993557 -0.3 1836 1002 Op 1 . - CDS 1993634 - 1994182 454 ## COG3226 Uncharacterized protein conserved in bacteria 1837 1002 Op 2 . - CDS 1994228 - 1994380 75 ## gi|291085649|ref|ZP_06571142.1| conserved hypothetical protein + Prom 1994213 - 1994272 2.5 1838 1003 Op 1 2/0.602 + CDS 1994349 - 1995476 1242 ## COG0477 Permeases of the major facilitator superfamily 1839 1003 Op 2 . + CDS 1995476 - 1996291 779 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 1996357 - 1996391 -0.1 1840 1004 Tu 1 . + CDS 1996400 - 1996681 207 ## SSON_0828 hypothetical protein + Term 1996742 - 1996785 4.1 1841 1005 Tu 1 . - CDS 1996872 - 1998104 1433 ## COG0477 Permeases of the major facilitator superfamily - Prom 1998129 - 1998188 4.9 + Prom 1998211 - 1998270 7.3 1842 1006 Op 1 4/0.402 + CDS 1998352 - 1999011 671 ## COG0671 Membrane-associated phospholipid phosphatase 1843 1006 Op 2 . + CDS 1999076 - 1999834 740 ## COG1349 Transcriptional regulators of sugar metabolism + Term 1999892 - 1999922 -1.0 - Term 1999827 - 1999869 13.1 1844 1007 Tu 1 . - CDS 1999879 - 2001102 1255 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Prom 2001150 - 2001209 5.2 1845 1008 Tu 1 . + CDS 2001411 - 2002037 642 ## COG0625 Glutathione S-transferase 1846 1009 Tu 1 . - CDS 2002043 - 2003140 891 ## COG2133 Glucose/sorbosone dehydrogenases - Prom 2003179 - 2003238 4.3 - Term 2003208 - 2003238 3.0 1847 1010 Tu 1 . - CDS 2003243 - 2003626 301 ## CKO_02273 biofilm formation regulatory protein BssR - Prom 2003728 - 2003787 4.3 + Prom 2003692 - 2003751 4.0 1848 1011 Tu 1 . + CDS 2003847 - 2004773 495 ## COG0583 Transcriptional regulator 1849 1012 Op 1 . - CDS 2005046 - 2006305 1193 ## COG0058 Glucan phosphorylase 1850 1012 Op 2 . - CDS 2006358 - 2006543 57 ## gi|291085653|ref|ZP_06571144.1| putative glycine cleavage system T protein - Prom 2006749 - 2006808 5.2 + Prom 2006689 - 2006748 5.5 1851 1013 Tu 1 . + CDS 2006775 - 2008082 618 ## PROTEIN SUPPORTED gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase 1852 1014 Op 1 49/0.000 - CDS 2008177 - 2009046 989 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1853 1014 Op 2 38/0.000 - CDS 2009091 - 2010011 963 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1854 1014 Op 3 11/0.025 - CDS 2010058 - 2011596 1848 ## COG0747 ABC-type dipeptide transport system, periplasmic component 1855 1014 Op 4 3/0.500 - CDS 2011625 - 2013496 822 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 1856 1014 Op 5 . - CDS 2013483 - 2014448 922 ## COG1446 Asparaginase - Prom 2014518 - 2014577 6.3 1857 1015 Tu 1 . - CDS 2014640 - 2015230 330 ## COG1708 Predicted nucleotidyltransferases - Prom 2015480 - 2015539 3.0 + Prom 2015367 - 2015426 3.1 1858 1016 Op 1 9/0.036 + CDS 2015635 - 2016870 1216 ## COG0303 Molybdopterin biosynthesis enzyme 1859 1016 Op 2 . + CDS 2016870 - 2017619 784 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 - Term 2017612 - 2017651 4.5 1860 1017 Tu 1 . - CDS 2017706 - 2018368 784 ## COG0176 Transaldolase - Prom 2018437 - 2018496 3.4 + Prom 2018338 - 2018397 3.5 1861 1018 Op 1 11/0.025 + CDS 2018501 - 2019400 727 ## COG1180 Pyruvate-formate lyase-activating enzyme 1862 1018 Op 2 2/0.602 + CDS 2019406 - 2021838 2876 ## COG1882 Pyruvate-formate lyase + Term 2021945 - 2021986 4.0 + Prom 2021975 - 2022034 4.2 1863 1019 Tu 1 . + CDS 2022061 - 2022876 835 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 2022886 - 2022913 -0.1 + Prom 2022895 - 2022954 3.5 1864 1020 Tu 1 . + CDS 2023023 - 2024285 1258 ## G2583_1049 hypothetical protein + Term 2024287 - 2024311 -1.0 1865 1021 Tu 1 . - CDS 2024366 - 2025961 2129 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 2026034 - 2026093 3.5 1866 1022 Tu 1 . + CDS 2026119 - 2027108 1107 ## COG1376 Uncharacterized protein conserved in bacteria 1867 1023 Op 1 4/0.402 - CDS 2027203 - 2028312 995 ## COG0471 Di- and tricarboxylate transporters 1868 1023 Op 2 . - CDS 2028309 - 2028782 581 ## COG1321 Mn-dependent transcriptional regulator - Prom 2028884 - 2028943 5.4 + Prom 2028841 - 2028900 4.7 1869 1024 Tu 1 . + CDS 2028969 - 2029097 107 ## SC0831 hypothetical protein + Term 2029099 - 2029130 2.4 + Prom 2029200 - 2029259 3.9 1870 1025 Tu 1 . + CDS 2029374 - 2030954 1580 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase + Term 2031051 - 2031078 -0.9 - Term 2031038 - 2031067 1.2 1871 1026 Tu 1 . - CDS 2031089 - 2031604 439 ## COG3637 Opacity protein and related surface antigens - Prom 2031637 - 2031696 4.6 + Prom 2031864 - 2031923 5.9 1872 1027 Tu 1 . + CDS 2032005 - 2032892 919 ## COG5006 Predicted permease, DMT superfamily + Term 2032922 - 2032968 -0.5 + Prom 2032952 - 2033011 11.0 1873 1028 Tu 1 . + CDS 2033196 - 2033699 674 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 2033722 - 2033763 7.9 + Prom 2033757 - 2033816 3.8 1874 1029 Op 1 31/0.000 + CDS 2034065 - 2034811 965 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 2034817 - 2034872 8.0 1875 1029 Op 2 34/0.000 + CDS 2034950 - 2035609 874 ## COG0765 ABC-type amino acid transport system, permease component 1876 1029 Op 3 3/0.500 + CDS 2035606 - 2036328 599 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 2036337 - 2036370 5.4 + Prom 2036358 - 2036417 5.1 1877 1030 Tu 1 . + CDS 2036446 - 2038683 1982 ## COG0668 Small-conductance mechanosensitive channel 1878 1031 Tu 1 . - CDS 2038680 - 2039606 816 ## COG3129 Predicted SAM-dependent methyltransferase - Prom 2039626 - 2039685 3.5 + Prom 2039584 - 2039643 2.4 1879 1032 Tu 1 . + CDS 2039817 - 2040077 387 ## EC55989_0850 hypothetical protein + Term 2040094 - 2040126 2.5 + Prom 2040137 - 2040196 4.8 1880 1033 Tu 1 . + CDS 2040219 - 2040485 224 ## COG1734 DnaK suppressor protein + Term 2040530 - 2040578 -0.5 + Prom 2040598 - 2040657 4.5 1881 1034 Tu 1 . + CDS 2040787 - 2041047 337 ## SC0820 hypothetical protein + Term 2041113 - 2041146 5.2 1882 1035 Tu 1 . - CDS 2041146 - 2042231 1222 ## COG2055 Malate/L-lactate dehydrogenases - Prom 2042264 - 2042323 1.6 1883 1036 Tu 1 . + CDS 2042124 - 2042351 102 ## - Term 2042341 - 2042380 6.4 1884 1037 Op 1 4/0.402 - CDS 2042393 - 2043361 1276 ## COG0547 Anthranilate phosphoribosyltransferase 1885 1037 Op 2 . - CDS 2043391 - 2045541 2098 ## COG1199 Rad3-related DNA helicases - Prom 2045568 - 2045627 1.6 - Term 2045556 - 2045582 -1.0 1886 1038 Op 1 . - CDS 2045719 - 2047140 1229 ## COG0471 Di- and tricarboxylate transporters 1887 1038 Op 2 . - CDS 2047174 - 2048526 1453 ## COG0015 Adenylosuccinate lyase - Prom 2048705 - 2048764 2.1 + Prom 2048511 - 2048570 1.9 1888 1039 Tu 1 . + CDS 2048729 - 2049463 435 ## COG2188 Transcriptional regulators + Term 2049466 - 2049517 16.1 1889 1040 Tu 1 . - CDS 2049532 - 2050875 1499 ## COG0513 Superfamily II DNA and RNA helicases - Prom 2050963 - 2051022 3.5 + Prom 2051008 - 2051067 2.9 1890 1041 Op 1 15/0.010 + CDS 2051097 - 2051774 724 ## COG1309 Transcriptional regulator 1891 1041 Op 2 10/0.031 + CDS 2051771 - 2052766 1096 ## COG0845 Membrane-fusion protein 1892 1041 Op 3 45/0.000 + CDS 2052759 - 2054495 210 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 1893 1041 Op 4 22/0.000 + CDS 2054488 - 2055621 1382 ## COG0842 ABC-type multidrug transport system, permease component 1894 1041 Op 5 . + CDS 2055632 - 2056738 1176 ## COG0842 ABC-type multidrug transport system, permease component 1895 1042 Tu 1 . - CDS 2056700 - 2057110 459 ## ROD_07911 hypothetical protein - Prom 2057320 - 2057379 3.9 1896 1043 Op 1 8/0.048 + CDS 2057243 - 2058004 567 ## COG3568 Metal-dependent hydrolase 1897 1043 Op 2 5/0.226 + CDS 2058001 - 2059242 1071 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 1898 1043 Op 3 . + CDS 2059242 - 2060204 986 ## COG0392 Predicted integral membrane protein 1899 1044 Op 1 5/0.226 - CDS 2060288 - 2060992 956 ## COG0670 Integral membrane protein, interacts with FtsH 1900 1044 Op 2 21/0.000 - CDS 2061034 - 2061486 541 ## COG0314 Molybdopterin converting factor, large subunit 1901 1044 Op 3 11/0.025 - CDS 2061488 - 2061733 332 ## COG1977 Molybdopterin converting factor, small subunit 1902 1044 Op 4 11/0.025 - CDS 2061726 - 2062211 605 ## COG0315 Molybdenum cofactor biosynthesis enzyme 1903 1044 Op 5 6/0.128 - CDS 2062214 - 2062726 642 ## COG0521 Molybdopterin biosynthesis enzymes 1904 1044 Op 6 . - CDS 2062746 - 2063735 940 ## COG2896 Molybdenum cofactor biosynthesis enzyme + Prom 2064116 - 2064175 2.2 1905 1045 Tu 1 . + CDS 2064199 - 2065107 996 ## COG0391 Uncharacterized conserved protein 1906 1046 Tu 1 . - CDS 2065200 - 2067221 2527 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 2067252 - 2067311 5.9 - Term 2067604 - 2067640 3.4 1907 1047 Op 1 9/0.036 - CDS 2067839 - 2068537 623 ## COG0132 Dethiobiotin synthetase 1908 1047 Op 2 6/0.128 - CDS 2068530 - 2069285 801 ## COG0500 SAM-dependent methyltransferases 1909 1047 Op 3 12/0.017 - CDS 2069272 - 2070426 1212 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 1910 1047 Op 4 . - CDS 2070423 - 2071463 1271 ## COG0502 Biotin synthase and related enzymes - Prom 2071530 - 2071589 4.1 + Prom 2071447 - 2071506 3.4 1911 1048 Op 1 4/0.402 + CDS 2071540 - 2072829 1268 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1912 1048 Op 2 . + CDS 2072887 - 2073363 572 ## COG1881 Phospholipid-binding protein - Term 2073398 - 2073424 -0.6 1913 1049 Op 1 6/0.128 - CDS 2073459 - 2074979 1698 ## COG2986 Histidine ammonia-lyase 1914 1049 Op 2 . - CDS 2074981 - 2076666 1907 ## COG2987 Urocanate hydratase - Prom 2076723 - 2076782 6.2 1915 1050 Op 1 1/0.738 - CDS 2076831 - 2077550 819 ## COG2188 Transcriptional regulators - Prom 2077576 - 2077635 1.7 1916 1050 Op 2 7/0.082 - CDS 2077637 - 2078578 844 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 1917 1050 Op 3 . - CDS 2078575 - 2079798 973 ## COG1228 Imidazolonepropionase and related amidohydrolases - Prom 2079828 - 2079887 5.6 + Prom 2079824 - 2079883 4.7 1918 1051 Tu 1 . + CDS 2079992 - 2081305 1411 ## COG4677 Pectin methylesterase - Term 2081194 - 2081239 -0.6 1919 1052 Tu 1 . - CDS 2081403 - 2083664 2091 ## COG1048 Aconitase A 1920 1053 Op 1 3/0.500 - CDS 2083728 - 2085161 1281 ## COG0471 Di- and tricarboxylate transporters 1921 1053 Op 2 . - CDS 2085244 - 2086296 780 ## COG2828 Uncharacterized protein conserved in bacteria - Prom 2086366 - 2086425 5.2 + Prom 2086384 - 2086443 7.8 1922 1054 Tu 1 . + CDS 2086596 - 2087408 481 ## COG0583 Transcriptional regulator + Term 2087657 - 2087691 -0.9 - Term 2087423 - 2087468 4.1 1923 1055 Tu 1 . - CDS 2087487 - 2088482 1039 ## COG2706 3-carboxymuconate cyclase + Prom 2088554 - 2088613 3.1 1924 1056 Tu 1 . + CDS 2088647 - 2089465 950 ## COG0561 Predicted hydrolases of the HAD superfamily 1925 1057 Op 1 13/0.013 - CDS 2089466 - 2090524 1231 ## COG4148 ABC-type molybdate transport system, ATPase component 1926 1057 Op 2 23/0.000 - CDS 2090527 - 2091216 693 ## COG4149 ABC-type molybdate transport system, permease component 1927 1057 Op 3 . - CDS 2091216 - 2091989 983 ## COG0725 ABC-type molybdate transport system, periplasmic component - Prom 2092113 - 2092172 4.6 - Term 2092150 - 2092179 1.1 1928 1058 Tu 1 . - CDS 2092189 - 2092338 155 ## EFER_2347 outer membrane or exported - Prom 2092361 - 2092420 4.4 + Prom 2092320 - 2092379 3.3 1929 1059 Op 1 4/0.402 + CDS 2092469 - 2093257 838 ## COG2005 N-terminal domain of molybdenum-binding protein 1930 1059 Op 2 . + CDS 2093325 - 2094797 177 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 2094809 - 2094839 1.0 + Prom 2094834 - 2094893 5.3 1931 1060 Op 1 3/0.500 + CDS 2095015 - 2096031 1084 ## COG1087 UDP-glucose 4-epimerase 1932 1060 Op 2 8/0.048 + CDS 2096041 - 2097087 1050 ## COG1085 Galactose-1-phosphate uridylyltransferase 1933 1060 Op 3 6/0.128 + CDS 2097091 - 2098239 1390 ## COG0153 Galactokinase 1934 1060 Op 4 4/0.402 + CDS 2098233 - 2099273 921 ## COG2017 Galactose mutarotase and related enzymes + Term 2099287 - 2099329 6.8 + Prom 2099413 - 2099472 4.6 1935 1061 Tu 1 . + CDS 2099507 - 2100259 1198 ## COG0588 Phosphoglycerate mutase 1 + Term 2100286 - 2100315 2.1 - Term 2100274 - 2100303 2.1 1936 1062 Tu 1 . - CDS 2100367 - 2101419 1243 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 2101481 - 2101540 5.2 1937 1063 Tu 1 . + CDS 2101736 - 2102110 322 ## CKO_02387 hypothetical protein + Term 2102126 - 2102169 3.4 + Prom 2102132 - 2102191 6.5 1938 1064 Tu 1 . + CDS 2102224 - 2103165 736 ## COG1230 Co/Zn/Cd efflux system component + Term 2103173 - 2103210 4.8 1939 1065 Op 1 5/0.226 - CDS 2103162 - 2103881 800 ## COG3201 Nicotinamide mononucleotide transporter 1940 1065 Op 2 6/0.128 - CDS 2103909 - 2104952 805 ## COG0379 Quinolinate synthase - Prom 2105027 - 2105086 3.5 - TRNA 2105340 - 2105415 101.8 # Lys TTT 0 0 - TRNA 2105547 - 2105622 99.5 # Lys TTT 0 0 - TRNA 2105813 - 2105888 94.3 # Val TAC 0 0 - TRNA 2105926 - 2106001 99.5 # Lys TTT 0 0 1941 1066 Op 1 13/0.013 - CDS 2106166 - 2106954 629 ## COG1729 Uncharacterized protein conserved in bacteria 1942 1066 Op 2 20/0.000 - CDS 2106964 - 2107482 613 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 1943 1066 Op 3 8/0.048 - CDS 2107517 - 2108809 1309 ## COG0823 Periplasmic component of the Tol biopolymer transport system - Prom 2108836 - 2108895 3.2 1944 1067 Op 1 8/0.048 - CDS 2108938 - 2110140 1002 ## COG3064 Membrane protein involved in colicin uptake 1945 1067 Op 2 30/0.000 - CDS 2110205 - 2110633 502 ## COG0848 Biopolymer transport protein 1946 1067 Op 3 13/0.013 - CDS 2110637 - 2111320 859 ## COG0811 Biopolymer transport proteins 1947 1067 Op 4 7/0.082 - CDS 2111326 - 2111730 378 ## COG0824 Predicted thioesterase - Prom 2111885 - 2111944 3.0 - Term 2111936 - 2111973 6.6 1948 1068 Op 1 2/0.602 - CDS 2111994 - 2112287 259 ## COG3790 Predicted membrane protein 1949 1068 Op 2 3/0.500 - CDS 2112287 - 2112400 112 ## COG4890 Predicted outer membrane lipoprotein 1950 1068 Op 3 31/0.000 - CDS 2112415 - 2113554 1475 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 1951 1068 Op 4 . - CDS 2113570 - 2115138 1924 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 2115312 - 2115371 5.0 + Prom 2116076 - 2116135 3.5 1952 1069 Op 1 . + CDS 2116357 - 2116806 524 ## COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 1953 1069 Op 2 . + CDS 2116806 - 2118200 1112 ## CKO_02417 hypothetical protein 1954 1069 Op 3 3/0.500 + CDS 2118213 - 2119658 1567 ## COG4865 Glutamate mutase epsilon subunit 1955 1069 Op 4 . + CDS 2119658 - 2120899 1473 ## COG3799 Methylaspartate ammonia-lyase 1956 1069 Op 5 . + CDS 2120903 - 2122273 1524 ## Entcl_1731 hypothetical protein 1957 1069 Op 6 . + CDS 2122270 - 2122587 310 ## Entcl_1730 hypothetical protein 1958 1070 Tu 1 . + CDS 2122780 - 2124063 1304 ## COG1301 Na+/H+-dicarboxylate symporters + Prom 2124069 - 2124128 2.3 1959 1071 Op 1 . + CDS 2124189 - 2125190 1178 ## COG2066 Glutaminase 1960 1071 Op 2 2/0.602 + CDS 2125282 - 2126934 423 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase 1961 1071 Op 3 . + CDS 2126944 - 2127546 712 ## COG2109 ATP:corrinoid adenosyltransferase + Term 2127674 - 2127715 1.1 1962 1072 Tu 1 . - CDS 2127634 - 2128548 552 ## COG0583 Transcriptional regulator - Prom 2128573 - 2128632 6.8 1963 1073 Tu 1 . + CDS 2128942 - 2129730 661 ## COG0007 Uroporphyrinogen-III methylase - Term 2129587 - 2129629 5.2 1964 1074 Tu 1 . - CDS 2129709 - 2130449 376 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 2130694 - 2130753 5.9 - Term 2130733 - 2130762 2.1 1965 1075 Op 1 39/0.000 - CDS 2130825 - 2131694 1197 ## COG0074 Succinyl-CoA synthetase, alpha subunit 1966 1075 Op 2 6/0.128 - CDS 2131694 - 2132860 1453 ## COG0045 Succinyl-CoA synthetase, beta subunit - Prom 2132885 - 2132944 3.1 1967 1076 Op 1 21/0.000 - CDS 2132952 - 2134175 1633 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 1968 1076 Op 2 5/0.226 - CDS 2134190 - 2136991 2990 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes - Prom 2137020 - 2137079 2.9 - Term 2137220 - 2137270 -0.8 1969 1077 Op 1 36/0.000 - CDS 2137365 - 2138081 682 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 1970 1077 Op 2 22/0.000 - CDS 2138097 - 2139863 2209 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 1971 1077 Op 3 24/0.000 - CDS 2139863 - 2140210 510 ## COG2142 Succinate dehydrogenase, hydrophobic anchor subunit 1972 1077 Op 4 . - CDS 2140204 - 2140608 276 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 2140818 - 2140877 5.6 + Prom 2141082 - 2141141 5.5 1973 1078 Tu 1 . + CDS 2141306 - 2142589 1502 ## COG0372 Citrate synthase + Term 2142598 - 2142631 5.2 + Prom 2142642 - 2142701 5.4 1974 1079 Tu 1 . + CDS 2142922 - 2143263 158 ## CKO_02442 hypothetical protein + Prom 2143560 - 2143619 4.3 1975 1080 Tu 1 . + CDS 2143677 - 2144081 104 ## COG4316 Uncharacterized protein conserved in bacteria + Prom 2144118 - 2144177 6.0 1976 1081 Tu 1 . + CDS 2144213 - 2145262 707 ## COG3180 Putative ammonia monooxygenase + Term 2145472 - 2145521 3.0 1977 1082 Tu 1 . - CDS 2145270 - 2146058 511 ## CKO_02446 hypothetical protein - Term 2146078 - 2146130 3.2 1978 1083 Op 1 . - CDS 2146139 - 2147329 733 ## CKO_02447 hypothetical protein 1979 1083 Op 2 1/0.738 - CDS 2147351 - 2148616 1444 ## COG0477 Permeases of the major facilitator superfamily 1980 1083 Op 3 . - CDS 2148641 - 2150422 1025 ## COG4289 Uncharacterized protein conserved in bacteria - Prom 2150453 - 2150512 4.3 + Prom 2150444 - 2150503 4.5 1981 1084 Tu 1 . + CDS 2150613 - 2151461 742 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 2151412 - 2151446 -0.5 1982 1085 Op 1 . - CDS 2151464 - 2152255 766 ## COG0266 Formamidopyrimidine-DNA glycosylase 1983 1085 Op 2 3/0.500 - CDS 2152270 - 2152914 520 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 1984 1085 Op 3 6/0.128 - CDS 2152924 - 2153919 1218 ## COG3817 Predicted membrane protein 1985 1085 Op 4 2/0.602 - CDS 2153916 - 2154638 904 ## COG3819 Predicted membrane protein 1986 1085 Op 5 8/0.048 - CDS 2154693 - 2155427 654 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 1987 1085 Op 6 21/0.000 - CDS 2155417 - 2156349 952 ## COG1984 Allophanate hydrolase subunit 2 1988 1085 Op 7 4/0.402 - CDS 2156343 - 2156999 640 ## COG2049 Allophanate hydrolase subunit 1 1989 1085 Op 8 . - CDS 2157016 - 2157759 888 ## COG0327 Uncharacterized conserved protein - Prom 2157940 - 2157999 3.5 + Prom 2157924 - 2157983 2.7 1990 1086 Tu 1 . + CDS 2158049 - 2159530 1694 ## COG3104 Dipeptide/tripeptide permease + Term 2159536 - 2159579 2.2 1991 1087 Tu 1 . - CDS 2159581 - 2160495 448 ## COG5464 Uncharacterized conserved protein - Prom 2160520 - 2160579 2.4 1992 1088 Op 1 1/0.738 - CDS 2160657 - 2162075 1248 ## COG0415 Deoxyribodipyrimidine photolyase 1993 1088 Op 2 . - CDS 2162097 - 2163050 746 ## COG1683 Uncharacterized conserved protein - Prom 2163071 - 2163130 1.8 - Term 2163083 - 2163124 4.0 1994 1088 Op 3 . - CDS 2163139 - 2163345 307 ## CKO_02461 hypothetical protein - Prom 2163512 - 2163571 8.8 + Prom 2163407 - 2163466 4.2 1995 1089 Op 1 . + CDS 2163540 - 2163743 77 ## EcE24377A_0725 K+-transporting ATPase, F subunit (EC:3.6.3.12) 1996 1089 Op 2 20/0.000 + CDS 2163743 - 2165422 1967 ## COG2060 K+-transporting ATPase, A chain 1997 1089 Op 3 18/0.000 + CDS 2165443 - 2167491 2630 ## COG2216 High-affinity K+ transport system, ATPase chain B 1998 1089 Op 4 15/0.010 + CDS 2167542 - 2168066 555 ## COG2156 K+-transporting ATPase, c chain 1999 1089 Op 5 16/0.000 + CDS 2168066 - 2170750 2524 ## COG2205 Osmosensitive K+ channel histidine kinase 2000 1089 Op 6 . + CDS 2170747 - 2171424 625 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 2171479 - 2171532 -0.9 - Term 2171430 - 2171468 3.3 2001 1090 Op 1 6/0.128 - CDS 2171522 - 2173162 1922 ## COG0033 Phosphoglucomutase 2002 1090 Op 2 . - CDS 2173187 - 2173729 484 ## COG3057 Negative regulator of replication initiationR - Prom 2173875 - 2173934 5.8 + Prom 2173596 - 2173655 2.8 2003 1091 Tu 1 . + CDS 2173863 - 2174696 760 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Prom 2174713 - 2174772 3.1 2004 1092 Tu 1 . + CDS 2174825 - 2175112 346 ## KP1_1661 LexA regulated protein + Prom 2175152 - 2175211 4.0 2005 1093 Tu 1 . + CDS 2175268 - 2175798 776 ## COG0716 Flavodoxins + Term 2175890 - 2175940 -0.7 + Prom 2175958 - 2176017 5.0 2006 1094 Tu 1 . + CDS 2176088 - 2176534 421 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 2176548 - 2176586 3.6 + Prom 2176569 - 2176628 4.9 2007 1095 Op 1 2/0.602 + CDS 2176654 - 2177580 675 ## COG0583 Transcriptional regulator 2008 1095 Op 2 . + CDS 2177678 - 2179081 1293 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2009 1095 Op 3 . + CDS 2179068 - 2180207 1037 ## Kvar_3668 CitB domain protein + Term 2180356 - 2180396 6.2 - Term 2180342 - 2180384 10.2 2010 1096 Op 1 . - CDS 2180403 - 2180735 317 ## SARI_02253 putative lipoprotein 2011 1096 Op 2 . - CDS 2180785 - 2182191 1799 ## CKO_02479 hypothetical protein - Prom 2182211 - 2182270 3.4 - Term 2182576 - 2182604 1.3 2012 1097 Tu 1 . - CDS 2182626 - 2184293 2056 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 2184328 - 2184387 5.2 - Term 2184411 - 2184447 9.4 2013 1098 Tu 1 . - CDS 2184481 - 2186430 2217 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 2186548 - 2186607 5.0 + Prom 2186612 - 2186671 3.8 2014 1099 Op 1 12/0.017 + CDS 2186774 - 2187574 793 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Term 2187584 - 2187622 6.3 2015 1099 Op 2 7/0.082 + CDS 2187636 - 2188784 1117 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 2016 1099 Op 3 5/0.226 + CDS 2188793 - 2190013 293 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 + Prom 2190096 - 2190155 4.5 2017 1100 Tu 1 . + CDS 2190180 - 2190932 688 ## COG0647 Predicted sugar phosphatases of the HAD superfamily + Prom 2191059 - 2191118 4.7 2018 1101 Tu 1 . + CDS 2191230 - 2192894 1773 ## COG0367 Asparagine synthase (glutamine-hydrolyzing) + Term 2192905 - 2192944 7.7 + TRNA 2193119 - 2193195 95.3 # Met CAT 0 0 + TRNA 2193206 - 2193290 78.3 # Leu TAG 0 0 + TRNA 2193314 - 2193388 74.3 # Gln TTG 0 0 + TRNA 2193426 - 2193500 74.3 # Gln TTG 0 0 + TRNA 2193522 - 2193598 95.3 # Met CAT 0 0 + TRNA 2193642 - 2193716 75.8 # Gln CTG 0 0 + TRNA 2193752 - 2193826 68.6 # Gln CTG 0 0 - Term 2193824 - 2193852 1.0 2019 1102 Tu 1 . - CDS 2193947 - 2195134 1200 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - Prom 2195279 - 2195338 2.9 + Prom 2195175 - 2195234 2.2 2020 1103 Tu 1 . + CDS 2195270 - 2196700 484 ## PROTEIN SUPPORTED gi|229230948|ref|ZP_04355465.1| SSU ribosomal protein S12P methylthiotransferase + Prom 2196835 - 2196894 3.0 2021 1104 Op 1 17/0.000 + CDS 2196945 - 2197991 1264 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 2022 1104 Op 2 11/0.025 + CDS 2197988 - 2198461 737 ## COG0319 Predicted metal-dependent hydrolase + Term 2198462 - 2198515 6.0 + Prom 2198479 - 2198538 4.3 2023 1105 Op 1 9/0.036 + CDS 2198620 - 2199498 960 ## COG4535 Putative Mg2+ and Co2+ transporter CorC 2024 1105 Op 2 4/0.402 + CDS 2199523 - 2201061 1869 ## COG0815 Apolipoprotein N-acyltransferase + Term 2201174 - 2201216 -0.3 + Prom 2201314 - 2201373 4.2 2025 1106 Op 1 31/0.000 + CDS 2201415 - 2202368 1109 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 2202491 - 2202523 4.0 2026 1106 Op 2 17/0.000 + CDS 2202531 - 2203271 861 ## COG0765 ABC-type amino acid transport system, permease component 2027 1106 Op 3 34/0.000 + CDS 2203271 - 2203945 910 ## COG0765 ABC-type amino acid transport system, permease component 2028 1106 Op 4 4/0.402 + CDS 2203945 - 2204670 556 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2029 1106 Op 5 . + CDS 2204787 - 2205722 997 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 2205742 - 2205799 10.4 - Term 2205715 - 2205764 -0.1 2030 1107 Tu 1 . - CDS 2205829 - 2206311 568 ## APECO1_1413 hypothetical protein - Prom 2206338 - 2206397 3.4 + Prom 2206347 - 2206406 5.3 2031 1108 Tu 1 . + CDS 2206547 - 2209129 3488 ## COG0495 Leucyl-tRNA synthetase 2032 1109 Op 1 12/0.017 + CDS 2209240 - 2209737 423 ## COG2980 Rare lipoprotein B 2033 1109 Op 2 7/0.082 + CDS 2209737 - 2210768 835 ## COG1466 DNA polymerase III, delta subunit 2034 1109 Op 3 . + CDS 2210761 - 2211411 600 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase - Term 2211194 - 2211220 -1.0 2035 1110 Tu 1 . - CDS 2211386 - 2212480 823 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 2212500 - 2212559 3.2 + Prom 2212334 - 2212393 3.6 2036 1111 Tu 1 . + CDS 2212577 - 2213188 284 ## COG0406 Fructose-2,6-bisphosphatase + Prom 2213200 - 2213259 5.3 2037 1112 Op 1 14/0.011 + CDS 2213443 - 2213760 250 ## COG0799 Uncharacterized homolog of plant Iojap protein 2038 1112 Op 2 9/0.036 + CDS 2213764 - 2214231 518 ## COG1576 Uncharacterized conserved protein 2039 1112 Op 3 19/0.000 + CDS 2214262 - 2216163 1876 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 2040 1112 Op 4 8/0.048 + CDS 2216166 - 2217278 1057 ## COG0772 Bacterial cell division membrane protein 2041 1112 Op 5 12/0.017 + CDS 2217289 - 2218383 824 ## COG0797 Lipoproteins + Term 2218458 - 2218500 2.0 + Prom 2218429 - 2218488 5.6 2042 1113 Tu 1 9/0.036 + CDS 2218526 - 2219737 1226 ## COG1686 D-alanyl-D-alanine carboxypeptidase + Term 2219788 - 2219828 8.3 + Prom 2219765 - 2219824 3.9 2043 1114 Op 1 6/0.128 + CDS 2219844 - 2220107 349 ## COG2921 Uncharacterized conserved protein + Prom 2220115 - 2220174 4.3 2044 1114 Op 2 13/0.013 + CDS 2220197 - 2220862 680 ## COG0321 Lipoate-protein ligase B + Term 2220935 - 2220961 0.3 + Prom 2220924 - 2220983 4.7 2045 1115 Tu 1 . + CDS 2221069 - 2222034 899 ## COG0320 Lipoate synthase + Term 2222072 - 2222098 0.1 - Term 2222045 - 2222101 6.8 2046 1116 Op 1 . - CDS 2222132 - 2222335 334 ## COG1826 Sec-independent protein secretion pathway components - Prom 2222382 - 2222441 2.7 - Term 2222345 - 2222385 1.6 2047 1116 Op 2 . - CDS 2222464 - 2223252 480 ## COG0388 Predicted amidohydrolase - Prom 2223284 - 2223343 3.3 + Prom 2223256 - 2223315 4.1 2048 1117 Tu 1 . + CDS 2223412 - 2223726 336 ## COG0239 Integral membrane protein possibly involved in chromosome condensation + Term 2223738 - 2223765 -0.9 - Term 2223726 - 2223753 -0.9 2049 1118 Tu 1 . - CDS 2223778 - 2223987 349 ## COG1278 Cold shock proteins - Prom 2224030 - 2224089 2.5 - Term 2224001 - 2224029 -0.0 2050 1119 Tu 1 . - CDS 2224176 - 2224739 660 ## CKO_02535 palmitoyl transferase - Prom 2224764 - 2224823 7.9 + Prom 2225111 - 2225170 8.5 2051 1120 Tu 1 . + CDS 2225202 - 2226587 1457 ## COG3069 C4-dicarboxylate transporter 2052 1121 Op 1 9/0.036 - CDS 2226704 - 2227384 261 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 2053 1121 Op 2 . - CDS 2227353 - 2229014 1396 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism 2054 1122 Op 1 5/0.226 + CDS 2229456 - 2230481 1053 ## COG3053 Citrate lyase synthetase 2055 1122 Op 2 6/0.128 + CDS 2230478 - 2230774 347 ## COG3052 Citrate lyase, gamma subunit 2056 1122 Op 3 6/0.128 + CDS 2230771 - 2231679 1226 ## COG2301 Citrate lyase beta subunit 2057 1122 Op 4 7/0.082 + CDS 2231689 - 2233221 1698 ## COG3051 Citrate lyase, alpha subunit 2058 1122 Op 5 5/0.226 + CDS 2233225 - 2233779 473 ## COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) 2059 1122 Op 6 5/0.226 + CDS 2233748 - 2234653 833 ## COG1767 Triphosphoribosyl-dephospho-CoA synthetase 2060 1122 Op 7 4/0.402 + CDS 2234677 - 2236140 1958 ## COG0471 Di- and tricarboxylate transporters + Term 2236171 - 2236206 5.0 + Prom 2236154 - 2236213 4.6 2061 1123 Tu 1 . + CDS 2236251 - 2237057 597 ## COG3719 Ribonuclease I - Term 2237050 - 2237095 9.1 2062 1124 Op 1 4/0.402 - CDS 2237099 - 2237722 560 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family - Prom 2237753 - 2237812 2.5 - Term 2237749 - 2237807 4.0 2063 1124 Op 2 . - CDS 2237819 - 2238649 868 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 2238702 - 2238761 3.2 + Prom 2238700 - 2238759 4.8 2064 1125 Op 1 . + CDS 2238926 - 2239336 474 ## COG0782 Transcription elongation factor + Term 2239372 - 2239403 2.5 + Prom 2239437 - 2239496 2.9 2065 1125 Op 2 . + CDS 2239524 - 2239952 450 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 2239965 - 2240001 7.0 - Term 2239954 - 2239988 7.4 2066 1126 Tu 1 . - CDS 2239995 - 2240942 477 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 2240956 - 2241000 11.7 2067 1127 Op 1 1/0.738 - CDS 2241007 - 2242221 867 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase 2068 1127 Op 2 3/0.500 - CDS 2242252 - 2243454 908 ## COG0477 Permeases of the major facilitator superfamily - Prom 2243598 - 2243657 2.0 - Term 2243621 - 2243665 -1.0 2069 1128 Tu 1 . - CDS 2243690 - 2244856 1015 ## COG1960 Acyl-CoA dehydrogenases - Prom 2244926 - 2244985 9.0 2070 1129 Op 1 2/0.602 + CDS 2245250 - 2246395 1023 ## COG1960 Acyl-CoA dehydrogenases 2071 1129 Op 2 29/0.000 + CDS 2246407 - 2247171 829 ## COG2086 Electron transfer flavoprotein, beta subunit 2072 1129 Op 3 9/0.036 + CDS 2247192 - 2248148 711 ## COG2025 Electron transfer flavoprotein, alpha subunit 2073 1129 Op 4 12/0.017 + CDS 2248194 - 2249486 892 ## COG0644 Dehydrogenases (flavoproteins) 2074 1129 Op 5 4/0.402 + CDS 2249483 - 2249767 115 ## COG2440 Ferredoxin-like protein 2075 1129 Op 6 5/0.226 + CDS 2249836 - 2251158 835 ## COG0477 Permeases of the major facilitator superfamily 2076 1129 Op 7 . + CDS 2251162 - 2252823 706 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 2077 1130 Tu 1 . + CDS 2252981 - 2253397 219 ## COG2033 Desulfoferrodoxin - Term 2253437 - 2253469 3.0 2078 1131 Tu 1 11/0.025 - CDS 2253499 - 2255064 419 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 2255152 - 2255211 2.8 - Term 2255140 - 2255171 4.1 2079 1132 Tu 1 . - CDS 2255215 - 2255778 614 ## COG0450 Peroxiredoxin 2080 1133 Tu 1 . + CDS 2256154 - 2256900 786 ## COG1651 Protein-disulfide isomerase + Prom 2257002 - 2257061 6.5 2081 1134 Tu 1 . + CDS 2257103 - 2258008 659 ## COG0583 Transcriptional regulator + Prom 2258028 - 2258087 4.5 2082 1135 Op 1 8/0.048 + CDS 2258165 - 2259388 825 ## COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase 2083 1135 Op 2 . + CDS 2259373 - 2259990 592 ## COG1475 Predicted transcriptional regulators - Term 2259917 - 2259963 4.7 2084 1136 Tu 1 . - CDS 2259991 - 2261151 1095 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 2261182 - 2261241 3.9 + Prom 2261157 - 2261216 4.0 2085 1137 Tu 1 . + CDS 2261283 - 2262371 1018 ## COG0371 Glycerol dehydrogenase and related enzymes 2086 1138 Op 1 9/0.036 - CDS 2262470 - 2262667 324 ## COG2879 Uncharacterized small protein - Term 2262677 - 2262712 8.5 2087 1138 Op 2 4/0.402 - CDS 2262731 - 2264836 2733 ## COG1966 Carbon starvation protein, predicted membrane protein - Prom 2264891 - 2264950 4.3 2088 1139 Op 1 5/0.226 - CDS 2265020 - 2265433 423 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 2089 1139 Op 2 5/0.226 - CDS 2265436 - 2266191 713 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 2090 1139 Op 3 5/0.226 - CDS 2266191 - 2267048 1005 ## COG1535 Isochorismate hydrolase 2091 1139 Op 4 6/0.128 - CDS 2267062 - 2268672 1676 ## COG1021 Peptide arylation enzymes 2092 1139 Op 5 . - CDS 2268682 - 2269857 1142 ## COG1169 Isochorismate synthase - Prom 2269911 - 2269970 5.3 + Prom 2269848 - 2269907 5.0 2093 1140 Tu 1 . + CDS 2270045 - 2271001 1005 ## COG4592 ABC-type Fe2+-enterobactin transport system, periplasmic component - Term 2270905 - 2270940 -0.8 2094 1141 Tu 1 . - CDS 2271056 - 2272294 1433 ## COG0477 Permeases of the major facilitator superfamily - Prom 2272336 - 2272395 3.9 + Prom 2272300 - 2272359 2.5 2095 1142 Op 1 8/0.048 + CDS 2272404 - 2273411 1204 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 2096 1142 Op 2 7/0.082 + CDS 2273411 - 2274400 1149 ## COG4779 ABC-type enterobactin transport system, permease component 2097 1142 Op 3 . + CDS 2274397 - 2275197 201 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 2098 1143 Tu 1 . - CDS 2275243 - 2276376 1112 ## COG3765 Chain length determinant protein - Prom 2276508 - 2276567 5.5 - Term 2276522 - 2276577 11.2 2099 1144 Op 1 2/0.602 - CDS 2276606 - 2280496 3133 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 2100 1144 Op 2 2/0.602 - CDS 2280493 - 2280711 162 ## COG3251 Uncharacterized protein conserved in bacteria 2101 1144 Op 3 . - CDS 2280742 - 2281959 826 ## COG2382 Enterochelin esterase and related enzymes - Prom 2282001 - 2282060 4.7 + Prom 2281962 - 2282021 4.4 2102 1145 Op 1 4/0.402 + CDS 2282213 - 2284486 2755 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 2103 1145 Op 2 . + CDS 2284535 - 2285188 269 ## COG2977 Phosphopantetheinyl transferase component of siderophore synthetase - Term 2285119 - 2285154 -0.2 2104 1146 Tu 1 . - CDS 2285178 - 2286875 1018 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins + Prom 2286936 - 2286995 3.2 2105 1147 Op 1 . + CDS 2287020 - 2288138 828 ## COG2170 Uncharacterized conserved protein 2106 1147 Op 2 . + CDS 2288205 - 2288453 381 ## CKO_02586 hypothetical protein 2107 1148 Op 1 . - CDS 2288475 - 2288816 422 ## COG2207 AraC-type DNA-binding domain-containing proteins 2108 1148 Op 2 . - CDS 2288834 - 2289946 1059 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 2290012 - 2290071 5.4 + Prom 2289971 - 2290030 2.9 2109 1149 Op 1 1/0.738 + CDS 2290136 - 2290717 501 ## COG1309 Transcriptional regulator 2110 1149 Op 2 4/0.402 + CDS 2290717 - 2291085 322 ## COG2315 Uncharacterized protein conserved in bacteria + Prom 2291098 - 2291157 6.2 2111 1150 Tu 1 . + CDS 2291334 - 2291987 829 ## COG0778 Nitroreductase + Term 2292000 - 2292037 5.1 2112 1151 Tu 1 . - CDS 2292029 - 2292895 693 ## COG1396 Predicted transcriptional regulators - Prom 2292957 - 2293016 3.6 + Prom 2292880 - 2292939 3.5 2113 1152 Op 1 3/0.500 + CDS 2293063 - 2294442 1234 ## COG0477 Permeases of the major facilitator superfamily + Term 2294475 - 2294508 3.2 2114 1152 Op 2 . + CDS 2294514 - 2295758 1072 ## COG0668 Small-conductance mechanosensitive channel - Term 2295763 - 2295808 12.6 2115 1153 Tu 1 . - CDS 2295813 - 2297207 1648 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 2297236 - 2297295 3.5 2116 1154 Tu 1 . + CDS 2297501 - 2298676 1108 ## COG1076 DnaJ-domain-containing proteins 1 + Prom 2299065 - 2299124 5.5 2117 1155 Op 1 . + CDS 2299293 - 2299871 408 ## gi|283834140|ref|ZP_06353881.1| transcriptional regulator, LuxR family + Prom 2299887 - 2299946 2.0 2118 1155 Op 2 . + CDS 2300068 - 2309406 10116 ## COG3468 Type V secretory pathway, adhesin AidA + Term 2309425 - 2309457 5.4 2119 1156 Op 1 . - CDS 2309550 - 2310317 746 ## COG2200 FOG: EAL domain 2120 1156 Op 2 . - CDS 2310417 - 2311004 242 ## KPK_0838 transcriptional regulator, LuxR family 2121 1156 Op 3 . - CDS 2311020 - 2311715 490 ## CKO_02608 hypothetical protein - Term 2312200 - 2312232 3.1 2122 1157 Op 1 11/0.025 - CDS 2312437 - 2315580 3851 ## COG3696 Putative silver efflux pump 2123 1157 Op 2 3/0.500 - CDS 2315592 - 2316884 1137 ## COG0845 Membrane-fusion protein 2124 1157 Op 3 3/0.500 - CDS 2316961 - 2317308 390 ## COG5569 Uncharacterized conserved protein 2125 1157 Op 4 . - CDS 2317341 - 2318723 480 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 - Prom 2318794 - 2318853 3.3 + Prom 2318708 - 2318767 3.9 2126 1158 Op 1 40/0.000 + CDS 2318918 - 2319601 835 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 2127 1158 Op 2 . + CDS 2319591 - 2321042 983 ## COG0642 Signal transduction histidine kinase + Prom 2321079 - 2321138 5.9 2128 1159 Op 1 . + CDS 2321163 - 2321372 225 ## gi|291085733|ref|ZP_06353892.2| putative copper-binding protein PcoE 2129 1159 Op 2 . + CDS 2321456 - 2322259 499 ## COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II + Term 2322306 - 2322343 0.6 + Prom 2322359 - 2322418 3.6 2130 1160 Tu 1 . + CDS 2322446 - 2322874 598 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 2322907 - 2322938 0.0 - TRNA 2323108 - 2323184 96.3 # Arg TCT 0 0 2131 1161 Tu 1 . - CDS 2323223 - 2323456 118 ## gi|291085735|ref|ZP_06353895.2| conserved hypothetical protein - Prom 2323490 - 2323549 1.9 + Prom 2323338 - 2323397 4.0 2132 1162 Tu 1 . + CDS 2323440 - 2324033 335 ## COG2771 DNA-binding HTH domain-containing proteins + Prom 2324123 - 2324182 6.6 2133 1163 Tu 1 . + CDS 2324420 - 2325142 257 ## CKO_02621 hypothetical protein 2134 1164 Tu 1 . + CDS 2325728 - 2326360 452 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 2326364 - 2326405 9.1 - Term 2326344 - 2326400 -0.7 2135 1165 Op 1 4/0.402 - CDS 2326410 - 2326946 387 ## COG3539 P pilus assembly protein, pilin FimA 2136 1165 Op 2 6/0.128 - CDS 2326939 - 2327946 761 ## COG3539 P pilus assembly protein, pilin FimA 2137 1165 Op 3 10/0.031 - CDS 2327951 - 2330572 2354 ## COG3188 P pilus assembly protein, porin PapC 2138 1165 Op 4 7/0.082 - CDS 2330580 - 2331272 636 ## COG3121 P pilus assembly protein, chaperone PapD 2139 1165 Op 5 4/0.402 - CDS 2331314 - 2331856 222 ## COG3539 P pilus assembly protein, pilin FimA 2140 1165 Op 6 . - CDS 2331925 - 2332494 609 ## COG3539 P pilus assembly protein, pilin FimA - Prom 2332692 - 2332751 6.2 + Prom 2332968 - 2333027 3.1 2141 1166 Op 1 2/0.602 + CDS 2333069 - 2333935 919 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 2142 1166 Op 2 . + CDS 2333937 - 2334149 314 ## COG2501 Uncharacterized conserved protein 2143 1167 Tu 1 . - CDS 2334048 - 2334293 106 ## + Prom 2334193 - 2334252 3.0 2144 1168 Tu 1 . + CDS 2334273 - 2334797 565 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Term 2334789 - 2334831 4.8 2145 1169 Tu 1 . - CDS 2334891 - 2336276 1832 ## COG0215 Cysteinyl-tRNA synthetase - Prom 2336309 - 2336368 4.8 + Prom 2336268 - 2336327 5.0 2146 1170 Tu 1 . + CDS 2336480 - 2336947 311 ## YPDSF_1194 lipoprotein + Prom 2336949 - 2337008 3.6 2147 1171 Op 1 8/0.048 + CDS 2337067 - 2337561 590 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 2148 1171 Op 2 5/0.226 + CDS 2337564 - 2338286 594 ## COG2908 Uncharacterized protein conserved in bacteria + Prom 2338302 - 2338361 3.4 2149 1172 Op 1 29/0.000 + CDS 2338405 - 2338914 574 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 2150 1172 Op 2 . + CDS 2338911 - 2339978 1420 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) + Prom 2339986 - 2340045 3.5 2151 1172 Op 3 . + CDS 2340075 - 2341160 1056 ## COG2603 Predicted ATPase - Term 2341084 - 2341121 6.2 2152 1173 Op 1 32/0.000 - CDS 2341161 - 2341820 941 ## COG2011 ABC-type metal ion transport system, permease component 2153 1173 Op 2 10/0.031 - CDS 2341813 - 2342829 1062 ## COG1135 ABC-type metal ion transport system, ATPase component - Term 2342840 - 2342869 2.1 2154 1173 Op 3 1/0.738 - CDS 2342891 - 2343721 1137 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 2343835 - 2343894 5.8 2155 1174 Tu 1 . - CDS 2343992 - 2345080 1342 ## COG3203 Outer membrane protein (porin) - Prom 2345214 - 2345273 4.3 - Term 2345257 - 2345294 6.2 2156 1175 Op 1 11/0.025 - CDS 2345313 - 2347727 2707 ## COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 2157 1175 Op 2 . - CDS 2347724 - 2348410 321 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) - Prom 2348531 - 2348590 2.3 + Prom 2348067 - 2348126 2.1 2158 1176 Op 1 5/0.226 + CDS 2348348 - 2349004 659 ## COG2755 Lysophospholipase L1 and related esterases 2159 1176 Op 2 3/0.500 + CDS 2349033 - 2349803 226 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 2160 1176 Op 3 . + CDS 2349862 - 2350716 1286 ## COG3118 Thioredoxin domain-containing protein - Term 2350752 - 2350790 -0.6 2161 1177 Op 1 4/0.402 - CDS 2350822 - 2351601 952 ## COG0390 ABC-type uncharacterized transport system, permease component 2162 1177 Op 2 . - CDS 2351588 - 2352265 258 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Prom 2352310 - 2352369 3.2 + Prom 2352269 - 2352328 5.4 2163 1178 Op 1 26/0.000 + CDS 2352400 - 2353317 1408 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 2164 1178 Op 2 . + CDS 2353314 - 2353772 483 ## COG1585 Membrane protein implicated in regulation of membrane protease activity 2165 1178 Op 3 . + CDS 2353793 - 2355946 2317 ## ETA_19300 hypothetical protein 2166 1178 Op 4 . + CDS 2355916 - 2356632 665 ## ETA_19310 hypothetical protein - Term 2356381 - 2356426 -0.3 2167 1179 Tu 1 . - CDS 2356629 - 2357039 376 ## COG0789 Predicted transcriptional regulators - Prom 2357073 - 2357132 3.9 + Prom 2356957 - 2357016 5.2 2168 1180 Tu 1 . + CDS 2357149 - 2359650 3087 ## COG2217 Cation transport ATPase + Term 2359672 - 2359733 20.1 + Prom 2359668 - 2359727 2.4 2169 1181 Tu 1 5/0.226 + CDS 2359804 - 2360598 703 ## COG3735 Uncharacterized protein conserved in bacteria + Term 2360614 - 2360647 -0.9 + Prom 2360685 - 2360744 3.5 2170 1182 Tu 1 . + CDS 2360800 - 2361279 569 ## COG2606 Uncharacterized conserved protein 2171 1183 Tu 1 . - CDS 2361460 - 2363112 1929 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 2363155 - 2363214 5.6 + Prom 2363170 - 2363229 3.6 2172 1184 Tu 1 . + CDS 2363287 - 2364507 1232 ## COG0477 Permeases of the major facilitator superfamily + Term 2364516 - 2364550 4.1 + Prom 2364567 - 2364626 3.7 2173 1185 Tu 1 . + CDS 2364733 - 2366412 515 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 - Term 2366404 - 2366450 1.4 2174 1186 Tu 1 . - CDS 2366503 - 2367807 1498 ## COG0524 Sugar kinases, ribokinase family + Prom 2367882 - 2367941 1.6 2175 1187 Tu 1 . + CDS 2367961 - 2368920 680 ## COG0657 Esterase/lipase + Term 2368922 - 2368958 -0.2 2176 1188 Tu 1 . - CDS 2368917 - 2369879 1002 ## COG0276 Protoheme ferro-lyase (ferrochelatase) - Prom 2370005 - 2370064 4.7 2177 1189 Tu 1 . - CDS 2370107 - 2370751 973 ## COG0563 Adenylate kinase and related kinases - Prom 2370891 - 2370950 4.6 - Term 2370896 - 2370951 11.7 2178 1190 Op 1 . - CDS 2370984 - 2372858 2549 ## COG0326 Molecular chaperone, HSP90 family - Prom 2372881 - 2372940 2.3 2179 1190 Op 2 23/0.000 - CDS 2372969 - 2373574 460 ## COG0353 Recombinational DNA repair protein (RecF pathway) 2180 1190 Op 3 30/0.000 - CDS 2373574 - 2373903 228 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 2181 1190 Op 4 8/0.048 - CDS 2373961 - 2375886 1964 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 2375923 - 2375982 2.8 - Term 2375920 - 2375967 6.0 2182 1191 Tu 1 . - CDS 2376004 - 2376555 841 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 2376633 - 2376692 4.1 2183 1192 Tu 1 . - CDS 2376750 - 2377127 320 ## COG2832 Uncharacterized protein conserved in bacteria - Prom 2377155 - 2377214 1.8 + Prom 2377114 - 2377173 4.4 2184 1193 Op 1 . + CDS 2377197 - 2377724 448 ## COG3923 Primosomal replication protein N'' 2185 1193 Op 2 . + CDS 2377738 - 2377905 203 ## ROD_05241 hypothetical protein 2186 1193 Op 3 . + CDS 2377975 - 2378886 720 ## COG5464 Uncharacterized conserved protein - Term 2378876 - 2378923 14.0 2187 1194 Op 1 . - CDS 2378926 - 2382285 3437 ## COG3264 Small-conductance mechanosensitive channel - Prom 2382336 - 2382395 1.9 - Term 2382372 - 2382407 1.2 2188 1194 Op 2 . - CDS 2382419 - 2383069 324 ## COG1309 Transcriptional regulator - Prom 2383130 - 2383189 3.6 2189 1195 Op 1 27/0.000 + CDS 2383211 - 2384404 1330 ## COG0845 Membrane-fusion protein 2190 1195 Op 2 . + CDS 2384427 - 2387576 3162 ## COG0841 Cation/multidrug efflux pump + Term 2387594 - 2387621 1.5 + Prom 2387856 - 2387915 6.6 2191 1196 Op 1 . + CDS 2388067 - 2388441 214 ## SG0484 hypothetical protein 2192 1196 Op 2 . + CDS 2388469 - 2388687 148 ## KPN_00441 hemolysin expression-modulating protein + Term 2388697 - 2388748 2.0 + Prom 2388700 - 2388759 7.0 2193 1197 Tu 1 . + CDS 2388868 - 2389419 522 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 2389468 - 2389520 -0.7 + Prom 2389439 - 2389498 7.5 2194 1198 Tu 1 . + CDS 2389536 - 2390006 452 ## ROD_05131 hypothetical protein - Term 2390018 - 2390054 2.3 2195 1199 Op 1 6/0.128 - CDS 2390083 - 2390223 240 ## PROTEIN SUPPORTED gi|227332016|ref|ZP_03835672.1| hypothetical protein CIT292_01461 2196 1199 Op 2 . - CDS 2390225 - 2390485 432 ## PROTEIN SUPPORTED gi|237781419|ref|YP_002848366.1| 50S ribosomal protein L31 type B - Prom 2390515 - 2390574 3.7 + Prom 2390589 - 2390648 4.4 2197 1200 Tu 1 . + CDS 2390673 - 2392226 1330 ## COG4943 Predicted signal transduction protein containing sensor and EAL domains + Term 2392245 - 2392292 2.2 - Term 2392113 - 2392151 2.4 2198 1201 Op 1 . - CDS 2392278 - 2392631 425 ## COG5507 Uncharacterized conserved protein 2199 1201 Op 2 . - CDS 2392696 - 2393325 632 ## COG2364 Predicted membrane protein - Prom 2393384 - 2393443 2.6 + Prom 2393330 - 2393389 3.3 2200 1202 Tu 1 . + CDS 2393413 - 2394840 844 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 2395078 - 2395105 0.1 - 5S_RRNA 2394901 - 2395014 98.0 # ECU82664 [D:55896..56009] # 4.5S ribosomal RNA # Escherichia coli # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. 2201 1203 Tu 1 . + CDS 2395169 - 2395480 344 ## COG3695 Predicted methylated DNA-protein cysteine methyltransferase 2202 1204 Tu 1 . - CDS 2395512 - 2396081 562 ## COG3126 Uncharacterized protein conserved in bacteria - Prom 2396135 - 2396194 80.3 2203 1205 Tu 1 . - CDS 2396196 - 2396588 482 ## COG3126 Uncharacterized protein conserved in bacteria - Prom 2396645 - 2396704 3.6 + Prom 2396705 - 2396764 4.3 2204 1206 Tu 1 . + CDS 2396800 - 2397660 855 ## COG1946 Acyl-CoA thioesterase 2205 1207 Op 1 24/0.000 - CDS 2397733 - 2399019 1672 ## COG0004 Ammonia permease 2206 1207 Op 2 4/0.402 - CDS 2399051 - 2399389 418 ## COG0347 Nitrogen regulatory protein PII - Prom 2399517 - 2399576 5.4 - Term 2399508 - 2399544 4.0 2207 1208 Op 1 35/0.000 - CDS 2399597 - 2401375 220 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 2208 1208 Op 2 3/0.500 - CDS 2401368 - 2403140 212 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 2403149 - 2403179 0.1 2209 1208 Op 3 . - CDS 2403185 - 2403643 503 ## COG1522 Transcriptional regulators - Prom 2403670 - 2403729 3.1 + Prom 2403626 - 2403685 2.8 2210 1209 Tu 1 . + CDS 2403760 - 2404815 1101 ## COG0031 Cysteine synthase - Term 2404815 - 2404852 3.7 2211 1210 Tu 1 . - CDS 2404866 - 2405684 788 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 2405716 - 2405775 3.2 + Prom 2405691 - 2405750 2.2 2212 1211 Op 1 5/0.226 + CDS 2405785 - 2407485 1205 ## COG4533 ABC-type uncharacterized transport system, periplasmic component 2213 1211 Op 2 . + CDS 2407550 - 2408245 704 ## COG0603 Predicted PP-loop superfamily ATPase 2214 1212 Tu 1 . - CDS 2408304 - 2408702 506 ## COG0824 Predicted thioesterase 2215 1213 Tu 1 . - CDS 2408809 - 2409183 288 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 2409210 - 2409269 2.8 - Term 2409258 - 2409285 1.5 2216 1214 Tu 1 . - CDS 2409330 - 2411204 2348 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 2411305 - 2411364 3.6 - Term 2411406 - 2411437 2.5 2217 1215 Op 1 16/0.000 - CDS 2411473 - 2411745 355 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 2411866 - 2411925 3.7 - Term 2411881 - 2411922 7.5 2218 1215 Op 2 18/0.000 - CDS 2411955 - 2414309 3092 ## COG0466 ATP-dependent Lon protease, bacterial type - Prom 2414428 - 2414487 6.7 - Term 2414426 - 2414467 6.4 2219 1216 Op 1 24/0.000 - CDS 2414494 - 2415768 1702 ## COG1219 ATP-dependent protease Clp, ATPase subunit 2220 1216 Op 2 29/0.000 - CDS 2415895 - 2416518 745 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 2416552 - 2416611 6.6 - Term 2416731 - 2416764 -0.3 2221 1216 Op 3 2/0.602 - CDS 2416765 - 2418063 1746 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 2418204 - 2418263 6.4 - Term 2418319 - 2418356 4.2 2222 1217 Tu 1 . - CDS 2418410 - 2418727 266 ## COG0271 Stress-induced morphogen (activity unknown) - Prom 2418776 - 2418835 4.8 + Prom 2418930 - 2418989 3.8 2223 1218 Op 1 1/0.738 + CDS 2419033 - 2419611 649 ## COG3056 Uncharacterized lipoprotein 2224 1218 Op 2 5/0.226 + CDS 2419656 - 2421131 1478 ## COG0477 Permeases of the major facilitator superfamily + Term 2421330 - 2421370 -0.1 + Prom 2421491 - 2421550 7.2 2225 1219 Op 1 25/0.000 + CDS 2421593 - 2422549 811 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 2226 1219 Op 2 20/0.000 + CDS 2422561 - 2424552 2154 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 2227 1219 Op 3 16/0.000 + CDS 2424542 - 2425156 761 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 2228 1219 Op 4 7/0.082 + CDS 2425156 - 2425485 355 ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 2229 1219 Op 5 2/0.602 + CDS 2425500 - 2426387 1086 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) + Term 2426430 - 2426486 4.6 + Prom 2426433 - 2426492 10.6 2230 1220 Tu 1 . + CDS 2426610 - 2427974 1502 ## COG0477 Permeases of the major facilitator superfamily 2231 1221 Tu 1 . - CDS 2428069 - 2428560 784 ## COG1666 Uncharacterized protein conserved in bacteria - Prom 2428586 - 2428645 3.0 + Prom 2428579 - 2428638 3.1 2232 1222 Op 1 4/0.402 + CDS 2428735 - 2429646 706 ## COG1893 Ketopantoate reductase 2233 1222 Op 2 . + CDS 2429609 - 2430199 563 ## COG0693 Putative intracellular protease/amidase 2234 1222 Op 3 . + CDS 2430232 - 2431284 823 ## Varpa_0262 hypothetical protein 2235 1223 Tu 1 . - CDS 2431385 - 2432782 1816 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase - Prom 2432806 - 2432865 4.6 2236 1224 Op 1 22/0.000 + CDS 2433042 - 2433284 328 ## COG1722 Exonuclease VII small subunit 2237 1224 Op 2 13/0.013 + CDS 2433285 - 2434184 929 ## COG0142 Geranylgeranyl pyrophosphate synthase 2238 1224 Op 3 3/0.500 + CDS 2434209 - 2436071 2059 ## COG1154 Deoxyxylulose-5-phosphate synthase 2239 1224 Op 4 . + CDS 2436128 - 2437102 1030 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 2240 1225 Op 1 12/0.017 - CDS 2437206 - 2437784 458 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 2241 1225 Op 2 11/0.025 - CDS 2437702 - 2438679 1025 ## COG0611 Thiamine monophosphate kinase - Term 2438695 - 2438751 10.9 2242 1226 Op 1 17/0.000 - CDS 2438756 - 2439175 524 ## COG0781 Transcription termination factor 2243 1226 Op 2 6/0.128 - CDS 2439195 - 2439665 580 ## COG0054 Riboflavin synthase beta-chain 2244 1226 Op 3 14/0.011 - CDS 2439756 - 2440859 1096 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 2245 1226 Op 4 . - CDS 2440863 - 2441312 432 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 2441341 - 2441400 4.6 2246 1227 Tu 1 . + CDS 2441467 - 2442006 511 ## CKO_02749 hypothetical protein + Prom 2442168 - 2442227 3.9 2247 1228 Tu 1 . + CDS 2442360 - 2443292 1213 ## COG3248 Nucleoside-binding outer membrane protein + Term 2443311 - 2443349 1.9 - Term 2444102 - 2444139 5.5 2248 1229 Op 1 31/0.000 - CDS 2444171 - 2445142 1081 ## COG0341 Preprotein translocase subunit SecF 2249 1229 Op 2 25/0.000 - CDS 2445153 - 2446967 2218 ## COG0342 Preprotein translocase subunit SecD 2250 1229 Op 3 15/0.010 - CDS 2447028 - 2447360 559 ## COG1862 Preprotein translocase subunit YajC 2251 1229 Op 4 17/0.000 - CDS 2447383 - 2448510 916 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase - Prom 2448576 - 2448635 3.3 - Term 2448538 - 2448579 5.0 2252 1229 Op 5 . - CDS 2448719 - 2449783 1287 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - Prom 2449809 - 2449868 3.4 + Prom 2449768 - 2449827 2.1 2253 1230 Tu 1 . + CDS 2449874 - 2450455 559 ## COG3124 Uncharacterized protein conserved in bacteria + Term 2450508 - 2450545 -0.9 + Prom 2450524 - 2450583 4.4 2254 1231 Tu 1 . + CDS 2450624 - 2451226 821 ## COG0450 Peroxiredoxin + Term 2451241 - 2451280 8.2 - Term 2451234 - 2451263 3.5 2255 1232 Op 1 . - CDS 2451302 - 2453170 2152 ## COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold 2256 1232 Op 2 . - CDS 2453192 - 2453737 600 ## COG3224 Uncharacterized protein conserved in bacteria 2257 1233 Tu 1 . - CDS 2453912 - 2454553 820 ## COG1335 Amidases related to nicotinamidase - Prom 2454631 - 2454690 5.0 2258 1234 Tu 1 . + CDS 2454827 - 2455729 869 ## COG0583 Transcriptional regulator 2259 1235 Tu 1 . - CDS 2455723 - 2457540 1405 ## COG0366 Glycosidases - Prom 2457596 - 2457655 3.0 - Term 2457635 - 2457670 4.5 2260 1236 Op 1 5/0.226 - CDS 2457678 - 2459051 1723 ## COG1113 Gamma-aminobutyrate permease and related permeases - Term 2459069 - 2459110 10.2 2261 1236 Op 2 4/0.402 - CDS 2459131 - 2460450 1485 ## COG1114 Branched-chain amino acid permeases - Prom 2460477 - 2460536 3.1 - Term 2460798 - 2460824 -1.0 2262 1237 Op 1 40/0.000 - CDS 2460855 - 2462150 1121 ## COG0642 Signal transduction histidine kinase 2263 1237 Op 2 . - CDS 2462201 - 2462890 774 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 2462930 - 2462989 5.4 + Prom 2462857 - 2462916 6.3 2264 1238 Op 1 28/0.000 + CDS 2463081 - 2464283 1131 ## COG0420 DNA repair exonuclease 2265 1238 Op 2 2/0.602 + CDS 2464280 - 2467429 3211 ## COG0419 ATPase involved in DNA repair + Term 2467558 - 2467586 1.4 2266 1239 Tu 1 . + CDS 2467594 - 2468763 1051 ## COG2814 Arabinose efflux permease + Term 2468827 - 2468855 -0.1 2267 1240 Tu 1 . - CDS 2468770 - 2469678 278 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 - Prom 2469755 - 2469814 3.6 + Prom 2469680 - 2469739 4.4 2268 1241 Tu 1 . + CDS 2469770 - 2470681 1052 ## COG2974 DNA recombination-dependent growth factor C + Term 2470689 - 2470733 11.8 2269 1242 Op 1 . - CDS 2470730 - 2471014 314 ## COG3123 Uncharacterized protein conserved in bacteria 2270 1242 Op 2 . - CDS 2471086 - 2471763 825 ## STM0390 hypothetical protein - Prom 2471916 - 2471975 7.3 2271 1243 Op 1 . - CDS 2472011 - 2472202 101 ## CKO_02782 hypothetical protein 2272 1243 Op 2 1/0.738 - CDS 2472229 - 2472774 517 ## COG0703 Shikimate kinase - Prom 2472825 - 2472884 5.5 - Term 2472873 - 2472912 -0.5 2273 1244 Tu 1 . - CDS 2472960 - 2473415 337 ## COG1671 Uncharacterized protein conserved in bacteria - Prom 2473657 - 2473716 2.7 + Prom 2473387 - 2473446 4.0 2274 1245 Tu 1 . + CDS 2473689 - 2474498 917 ## COG0345 Pyrroline-5-carboxylate reductase + Term 2474509 - 2474560 8.0 - Term 2474463 - 2474498 -0.3 2275 1246 Tu 1 . - CDS 2474516 - 2475478 723 ## COG2199 FOG: GGDEF domain - Prom 2475644 - 2475703 5.4 - Term 2475675 - 2475715 7.4 2276 1247 Op 1 . - CDS 2475722 - 2476042 249 ## G2583_0492 phosphate starvation-inducible protein - Term 2476092 - 2476134 7.1 2277 1247 Op 2 . - CDS 2476140 - 2477555 1411 ## COG1785 Alkaline phosphatase - Prom 2477579 - 2477638 4.8 - Term 2477623 - 2477651 -1.0 2278 1247 Op 3 . - CDS 2477655 - 2477900 293 ## ROD_04261 hypothetical protein - Prom 2477980 - 2478039 8.7 - Term 2478151 - 2478200 8.1 2279 1248 Tu 1 . - CDS 2478206 - 2479402 1040 ## COG0477 Permeases of the major facilitator superfamily - Prom 2479484 - 2479543 4.8 + Prom 2479448 - 2479507 4.2 2280 1249 Tu 1 . + CDS 2479704 - 2480798 1306 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Term 2480805 - 2480852 2.4 2281 1250 Tu 1 . - CDS 2480824 - 2481042 337 ## ECIAI1_0376 hypothetical protein - Prom 2481129 - 2481188 9.3 + Prom 2481132 - 2481191 9.1 2282 1251 Tu 1 . + CDS 2481306 - 2481629 349 ## ROD_04201 hypothetical protein 2283 1252 Op 1 . - CDS 2481614 - 2482717 993 ## CKO_02800 hypothetical protein 2284 1252 Op 2 . - CDS 2482732 - 2483952 1377 ## COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components + Prom 2484188 - 2484247 4.4 2285 1253 Tu 1 . + CDS 2484335 - 2485492 998 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 2485507 - 2485547 3.1 2286 1254 Op 1 . - CDS 2485494 - 2486117 202 ## ECUMN_0411 putative DNA-binding transcriptional regulator - Term 2486128 - 2486163 5.0 2287 1254 Op 2 . - CDS 2486208 - 2489129 3124 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 2489373 - 2489432 7.5 2288 1255 Tu 1 . + CDS 2489635 - 2490609 1148 ## COG0113 Delta-aminolevulinic acid dehydratase + Term 2490763 - 2490803 6.1 2289 1256 Op 1 5/0.226 - CDS 2490689 - 2491540 880 ## COG2175 Probable taurine catabolism dioxygenase 2290 1256 Op 2 7/0.082 - CDS 2491537 - 2492367 1130 ## COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 2291 1256 Op 3 6/0.128 - CDS 2492364 - 2493131 279 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2292 1256 Op 4 . - CDS 2493144 - 2494106 1232 ## COG4521 ABC-type taurine transport system, periplasmic component - Prom 2494323 - 2494382 6.7 + Prom 2494299 - 2494358 2.8 2293 1257 Op 1 5/0.226 + CDS 2494435 - 2495064 767 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 2294 1257 Op 2 5/0.226 + CDS 2495064 - 2496605 1362 ## COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific 2295 1258 Tu 1 3/0.500 + CDS 2496691 - 2496996 361 ## COG2271 Sugar phosphate permease + Term 2497091 - 2497118 -0.5 2296 1259 Op 1 3/0.500 + CDS 2497129 - 2497986 956 ## COG2271 Sugar phosphate permease 2297 1259 Op 2 21/0.000 + CDS 2497839 - 2499014 892 ## PROTEIN SUPPORTED gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 2298 1259 Op 3 17/0.000 + CDS 2499084 - 2501162 2688 ## COG1178 ABC-type Fe3+ transport system, permease component 2299 1259 Op 4 . + CDS 2501174 - 2502220 1247 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components + Term 2502275 - 2502314 7.4 2300 1260 Tu 1 . - CDS 2502310 - 2503242 1126 ## COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) 2301 1261 Op 1 1/0.738 - CDS 2503366 - 2504577 1694 ## COG0477 Permeases of the major facilitator superfamily 2302 1261 Op 2 6/0.128 - CDS 2504646 - 2505659 1527 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 2303 1261 Op 3 4/0.402 - CDS 2505656 - 2506606 1145 ## COG4569 Acetaldehyde dehydrogenase (acetylating) 2304 1261 Op 4 1/0.738 - CDS 2506603 - 2507412 946 ## COG3971 2-keto-4-pentenoate hydratase 2305 1261 Op 5 . - CDS 2507422 - 2508288 1098 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 2306 1261 Op 6 . - CDS 2508317 - 2509261 943 ## SSON_0295 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16) 2307 1261 Op 7 . - CDS 2509263 - 2510927 1858 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - Prom 2511108 - 2511167 6.5 + Prom 2510967 - 2511026 6.0 2308 1262 Op 1 . + CDS 2511119 - 2511931 734 ## COG1414 Transcriptional regulator + Prom 2511950 - 2512009 2.8 2309 1262 Op 2 . + CDS 2512040 - 2512435 155 ## COG0346 Lactoylglutathione lyase and related lyases + Term 2512523 - 2512573 4.3 - Term 2512508 - 2512564 10.3 2310 1263 Op 1 . - CDS 2512582 - 2513058 580 ## CKO_00840 hypothetical protein 2311 1263 Op 2 . - CDS 2513145 - 2513390 326 ## ECS88_1441 hypothetical protein - Prom 2513598 - 2513657 5.0 + Prom 2513539 - 2513598 6.1 2312 1264 Op 1 2/0.602 + CDS 2513760 - 2514554 914 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold 2313 1264 Op 2 1/0.738 + CDS 2514556 - 2515506 805 ## COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain + Prom 2515570 - 2515629 1.9 2314 1265 Tu 1 1/0.738 + CDS 2515658 - 2516740 847 ## COG1609 Transcriptional regulators + Prom 2516765 - 2516824 2.3 2315 1266 Tu 1 . + CDS 2516862 - 2519939 2674 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 2519946 - 2520008 2.6 + Prom 2520037 - 2520096 1.8 2316 1267 Tu 1 . + CDS 2520142 - 2520390 197 ## ETAE_1353 predicted lipoprotein + Term 2520395 - 2520438 4.3 - Term 2520382 - 2520426 12.1 2317 1268 Op 1 4/0.402 - CDS 2520434 - 2522320 2195 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2318 1268 Op 2 8/0.048 - CDS 2522361 - 2523812 1824 ## COG2079 Uncharacterized protein involved in propionate catabolism 2319 1268 Op 3 9/0.036 - CDS 2523850 - 2525019 1426 ## COG0372 Citrate synthase 2320 1269 Tu 1 . - CDS 2525145 - 2526026 1011 ## COG2513 PEP phosphonomutase and related enzymes - Prom 2526105 - 2526164 5.0 + Prom 2526095 - 2526154 4.2 2321 1270 Tu 1 . + CDS 2526279 - 2527889 1535 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - Term 2527860 - 2527897 7.2 2322 1271 Tu 1 . - CDS 2527922 - 2528197 280 ## CKO_02832 hypothetical protein - Prom 2528306 - 2528365 6.0 2323 1272 Tu 1 . - CDS 2528385 - 2529932 1052 ## Sterm_1912 hypothetical protein - Prom 2530061 - 2530120 2.6 2324 1273 Op 1 1/0.738 + CDS 2530090 - 2530737 757 ## COG1280 Putative threonine efflux protein 2325 1273 Op 2 . + CDS 2530823 - 2532211 1480 ## COG2199 FOG: GGDEF domain - Term 2532201 - 2532237 0.1 2326 1274 Tu 1 . - CDS 2532243 - 2532422 71 ## plu4427 hypothetical protein - Prom 2532447 - 2532506 4.2 + Prom 2532412 - 2532471 5.5 2327 1275 Tu 1 . + CDS 2532580 - 2533674 701 ## COG0348 Polyferredoxin + Prom 2533754 - 2533813 2.7 2328 1276 Tu 1 . + CDS 2533847 - 2534356 489 ## CHAB381_1312 hypothetical protein - Term 2534705 - 2534741 4.0 2329 1277 Tu 1 . - CDS 2534917 - 2537007 2417 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 2330 1278 Tu 1 . - CDS 2537147 - 2538130 653 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 2538171 - 2538230 4.0 2331 1279 Tu 1 . - CDS 2538306 - 2539889 718 ## COG0840 Methyl-accepting chemotaxis protein - Prom 2540049 - 2540108 4.8 - Term 2540009 - 2540045 -0.1 2332 1280 Op 1 . - CDS 2540136 - 2540384 104 ## gi|283834357|ref|ZP_06354098.1| conserved hypothetical protein 2333 1280 Op 2 . - CDS 2540400 - 2540999 238 ## Pat9b_4517 hypothetical protein - Prom 2541118 - 2541177 5.2 - Term 2541269 - 2541305 4.0 2334 1281 Op 1 . - CDS 2541326 - 2542687 1184 ## COG3069 C4-dicarboxylate transporter 2335 1281 Op 2 . - CDS 2542684 - 2543940 983 ## COG2195 Di- and tripeptidases - Prom 2544058 - 2544117 6.2 2336 1282 Op 1 1/0.738 + CDS 2545207 - 2545464 311 ## COG3811 Uncharacterized protein conserved in bacteria 2337 1282 Op 2 . + CDS 2545475 - 2546221 594 ## COG0500 SAM-dependent methyltransferases + Term 2546257 - 2546291 -0.7 - Term 2546214 - 2546261 5.5 2338 1283 Tu 1 . - CDS 2546265 - 2546840 436 ## COG0693 Putative intracellular protease/amidase - Prom 2546884 - 2546943 2.4 2339 1284 Tu 1 . - CDS 2546990 - 2548378 1780 ## COG0531 Amino acid transporters 2340 1285 Tu 1 . - CDS 2548722 - 2550140 1386 ## COG0174 Glutamine synthetase - Prom 2550201 - 2550260 5.6 + Prom 2550194 - 2550253 4.6 2341 1286 Op 1 1/0.738 + CDS 2550353 - 2551117 372 ## COG2071 Predicted glutamine amidotransferases 2342 1286 Op 2 4/0.402 + CDS 2551143 - 2551700 394 ## COG1396 Predicted transcriptional regulators + Term 2551709 - 2551739 4.3 + Prom 2551759 - 2551818 2.2 2343 1287 Op 1 6/0.128 + CDS 2551838 - 2553325 1652 ## COG1012 NAD-dependent aldehyde dehydrogenases 2344 1287 Op 2 1/0.738 + CDS 2553328 - 2554608 1647 ## COG0665 Glycine/D-amino acid oxidases (deaminating) + Term 2554628 - 2554668 7.2 + Prom 2554637 - 2554696 3.0 2345 1288 Op 1 11/0.025 + CDS 2554817 - 2555944 687 ## COG1740 Ni,Fe-hydrogenase I small subunit 2346 1288 Op 2 8/0.048 + CDS 2555941 - 2557734 1760 ## COG0374 Ni,Fe-hydrogenase I large subunit 2347 1288 Op 3 7/0.082 + CDS 2557753 - 2558487 579 ## COG1969 Ni,Fe-hydrogenase I cytochrome b subunit 2348 1288 Op 4 . + CDS 2558484 - 2559065 783 ## COG0680 Ni,Fe-hydrogenase maturation factor 2349 1288 Op 5 . + CDS 2559071 - 2559472 574 ## NT01EI_3405 hydrogenase-1 operon protein HyaE 2350 1288 Op 6 . + CDS 2559472 - 2560329 756 ## SSPA1010 hydrogenase-1 operon protein HyaF + Term 2560340 - 2560384 1.2 2351 1289 Op 1 31/0.000 + CDS 2560420 - 2561964 1739 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 2352 1289 Op 2 . + CDS 2561976 - 2563112 1026 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 2353 1289 Op 3 . + CDS 2563125 - 2563214 175 ## + Term 2563245 - 2563279 3.4 + Prom 2563230 - 2563289 3.4 2354 1290 Tu 1 . + CDS 2563346 - 2563738 377 ## COG0346 Lactoylglutathione lyase and related lyases - Term 2563788 - 2563814 -1.0 2355 1291 Op 1 1/0.738 - CDS 2563923 - 2564273 336 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain 2356 1291 Op 2 5/0.226 - CDS 2564286 - 2565878 1425 ## COG1070 Sugar (pentulose and hexulose) kinases 2357 1292 Tu 1 . - CDS 2565986 - 2566942 995 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 2567157 - 2567216 3.0 + Prom 2567014 - 2567073 6.4 2358 1293 Op 1 21/0.000 + CDS 2567198 - 2568745 224 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 2359 1293 Op 2 11/0.025 + CDS 2568739 - 2569788 1336 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 2360 1293 Op 3 16/0.000 + CDS 2569788 - 2570786 1198 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 2361 1293 Op 4 6/0.128 + CDS 2570813 - 2571835 1162 ## COG1879 ABC-type sugar transport system, periplasmic component 2362 1293 Op 5 5/0.226 + CDS 2571864 - 2572739 856 ## COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes + Term 2572746 - 2572783 6.9 2363 1294 Op 1 1/0.738 + CDS 2572790 - 2573080 310 ## COG1359 Uncharacterized conserved protein 2364 1294 Op 2 . + CDS 2573091 - 2573834 317 ## COG0036 Pentose-5-phosphate-3-epimerase 2365 1295 Tu 1 . - CDS 2573812 - 2574027 87 ## - Prom 2574090 - 2574149 5.1 + Prom 2574094 - 2574153 6.0 2366 1296 Op 1 1/0.738 + CDS 2574213 - 2575334 754 ## COG1363 Cellulase M and related proteins 2367 1296 Op 2 10/0.031 + CDS 2575331 - 2575609 273 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 2368 1296 Op 3 2/0.602 + CDS 2575621 - 2576934 1397 ## COG3775 Phosphotransferase system, galactitol-specific IIC component 2369 1296 Op 4 2/0.602 + CDS 2576947 - 2577753 878 ## COG0434 Predicted TIM-barrel enzyme 2370 1297 Op 1 2/0.602 + CDS 2577884 - 2578315 331 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2371 1297 Op 2 2/0.602 + CDS 2578327 - 2578959 539 ## COG0036 Pentose-5-phosphate-3-epimerase 2372 1297 Op 3 1/0.738 + CDS 2578976 - 2579758 507 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 2579941 - 2580000 3.6 2373 1298 Op 1 . + CDS 2580059 - 2580847 570 ## COG1414 Transcriptional regulator 2374 1298 Op 2 2/0.602 + CDS 2580798 - 2581757 814 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 2375 1298 Op 3 2/0.602 + CDS 2581768 - 2583735 1786 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase + Prom 2583757 - 2583816 1.9 2376 1299 Tu 1 . + CDS 2583842 - 2585191 1038 ## COG2610 H+/gluconate symporter and related permeases 2377 1300 Tu 1 . - CDS 2585422 - 2586708 305 ## COG2704 Anaerobic C4-dicarboxylate transporter 2378 1301 Op 1 2/0.602 - CDS 2586833 - 2587678 437 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - Term 2587723 - 2587749 -0.6 2379 1301 Op 2 4/0.402 - CDS 2587758 - 2589155 509 ## COG0477 Permeases of the major facilitator superfamily - Prom 2589305 - 2589364 5.5 - Term 2589334 - 2589396 12.2 2380 1302 Tu 1 . - CDS 2589419 - 2590348 731 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase - Prom 2590436 - 2590495 3.1 - Term 2590540 - 2590588 10.0 2381 1303 Tu 1 . - CDS 2590597 - 2591628 486 ## COG1609 Transcriptional regulators - Prom 2591862 - 2591921 7.0 + Prom 2591808 - 2591867 5.9 2382 1304 Op 1 . + CDS 2592086 - 2592283 87 ## gi|283834406|ref|ZP_06354147.1| 1-(5-phosphoribosyl)-5- 2383 1304 Op 2 . + CDS 2592437 - 2593780 683 ## COG3659 Carbohydrate-selective porin + Term 2593851 - 2593887 2.9 + Prom 2593935 - 2593994 4.2 2384 1305 Tu 1 . + CDS 2594156 - 2594302 61 ## - Term 2594282 - 2594324 4.5 2385 1306 Op 1 . - CDS 2594342 - 2595106 279 ## COG4735 Uncharacterized protein conserved in bacteria 2386 1306 Op 2 . - CDS 2595120 - 2595545 182 ## Sputcn32_2913 XRE family transcriptional regulator - Prom 2595594 - 2595653 4.6 - Term 2596055 - 2596107 -0.7 2387 1307 Op 1 . - CDS 2596127 - 2596237 59 ## 2388 1307 Op 2 . - CDS 2596286 - 2596474 85 ## KPK_A0087 hypothetical protein - Prom 2596679 - 2596738 3.8 + Prom 2596626 - 2596685 2.9 2389 1308 Tu 1 . + CDS 2596754 - 2597065 105 ## gi|291085823|ref|ZP_06354152.2| hypothetical protein CIT292_08582 - Term 2596848 - 2596875 -0.8 2390 1309 Tu 1 . - CDS 2597081 - 2597653 241 ## SBO_3738 hypothetical protein 2391 1310 Op 1 . - CDS 2597717 - 2597896 151 ## E2348C_3896 hypothetical protein 2392 1310 Op 2 . - CDS 2597877 - 2598065 325 ## gi|291085825|ref|ZP_06354155.2| conserved hypothetical protein 2393 1310 Op 3 . - CDS 2598078 - 2598641 385 ## E2348C_3895 hypothetical protein - Prom 2598666 - 2598725 2.9 - Term 2599670 - 2599716 1.1 2394 1311 Op 1 . - CDS 2599772 - 2602453 1129 ## COG5519 Superfamily II helicase and inactivated derivatives 2395 1311 Op 2 . - CDS 2602450 - 2602668 108 ## gi|283834417|ref|ZP_06354158.1| hypothetical bacteriophage protein 2396 1311 Op 3 . - CDS 2602671 - 2602967 224 ## gi|283834418|ref|ZP_06354159.1| conserved hypothetical protein 2397 1311 Op 4 . - CDS 2602964 - 2603836 496 ## KPK_A0175 hypothetical protein 2398 1311 Op 5 . - CDS 2603846 - 2604013 138 ## gi|283834420|ref|ZP_06354161.1| conserved hypothetical protein 2399 1311 Op 6 . - CDS 2604006 - 2604329 167 ## SbBS512_E4078 hypothetical protein - Prom 2604485 - 2604544 4.3 2400 1312 Tu 1 . - CDS 2605102 - 2605308 149 ## COG3311 Predicted transcriptional regulator - Prom 2605375 - 2605434 4.8 - Term 2605380 - 2605418 -0.4 2401 1313 Tu 1 . - CDS 2605496 - 2606206 294 ## gi|291085828|ref|ZP_06354165.2| putative Z3947 protein - Prom 2606367 - 2606426 2.3 2402 1314 Tu 1 . - CDS 2606440 - 2607654 409 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 2403 1315 Tu 1 . + CDS 2607741 - 2607935 69 ## + Term 2608019 - 2608058 1.2 - TRNA 2607821 - 2607896 91.5 # Thr CGT 0 0 2404 1316 Op 1 22/0.000 - CDS 2608011 - 2609261 1546 ## COG0014 Gamma-glutamyl phosphate reductase 2405 1316 Op 2 . - CDS 2609273 - 2610376 1317 ## COG0263 Glutamate 5-kinase - Prom 2610414 - 2610473 4.6 + Prom 2610503 - 2610562 5.0 2406 1317 Tu 1 . + CDS 2610666 - 2611721 1287 ## COG3203 Outer membrane protein (porin) + Term 2611737 - 2611778 9.2 - Term 2611725 - 2611766 8.4 2407 1318 Op 1 . - CDS 2611779 - 2612180 433 ## SG0330 DNA-binding transcriptional regulator Crl 2408 1318 Op 2 6/0.128 - CDS 2612238 - 2613482 1288 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 2613509 - 2613568 4.5 - Term 2613531 - 2613569 9.1 2409 1319 Tu 1 . - CDS 2613583 - 2614041 606 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 2614101 - 2614160 3.3 + Prom 2614060 - 2614119 2.4 2410 1320 Tu 1 . + CDS 2614303 - 2615760 1825 ## COG2195 Di- and tripeptidases + Term 2615807 - 2615857 2.0 - Term 2615764 - 2615801 -0.1 2411 1321 Op 1 . - CDS 2615895 - 2616950 896 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 2412 1321 Op 2 . - CDS 2617017 - 2617658 461 ## ROD_03301 hypothetical protein - Term 2617668 - 2617702 7.4 2413 1322 Op 1 19/0.000 - CDS 2617713 - 2618711 986 ## COG1360 Flagellar motor protein 2414 1322 Op 2 1/0.738 - CDS 2618714 - 2619577 1100 ## COG1291 Flagellar motor component 2415 1322 Op 3 . - CDS 2619607 - 2620323 678 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 2416 1322 Op 4 . - CDS 2620344 - 2620814 461 ## EcSMS35_0281 lateral flagellar basal body-associated protein LafF 2417 1322 Op 5 . - CDS 2620822 - 2621994 618 ## COG3144 Flagellar hook-length control protein 2418 1322 Op 6 . - CDS 2621991 - 2622308 205 ## EcolC_3355 hypothetical protein 2419 1322 Op 7 15/0.010 - CDS 2622313 - 2622705 494 ## COG1516 Flagellin-specific chaperone FliS 2420 1322 Op 8 3/0.500 - CDS 2622739 - 2624064 1464 ## COG1345 Flagellar capping protein - Prom 2624117 - 2624176 3.0 - Term 2624188 - 2624223 0.4 2421 1323 Tu 1 . - CDS 2624261 - 2625175 1048 ## COG1344 Flagellin and related hook-associated proteins - Prom 2625378 - 2625437 6.1 2422 1324 Op 1 . + CDS 2625731 - 2626681 604 ## COG3710 DNA-binding winged-HTH domains 2423 1324 Op 2 . + CDS 2626659 - 2627138 264 ## ROD_03181 hypothetical protein + Term 2627157 - 2627188 1.6 - Term 2627027 - 2627067 0.7 2424 1325 Op 1 . - CDS 2627135 - 2628136 803 ## ROD_03171 lateral flagellar putative hook associated protein 2425 1325 Op 2 21/0.000 - CDS 2628162 - 2629091 1164 ## COG1344 Flagellin and related hook-associated proteins 2426 1325 Op 3 9/0.036 - CDS 2629110 - 2630486 1568 ## COG1256 Flagellar hook-associated protein - Term 2630533 - 2630577 1.1 2427 1326 Op 1 7/0.082 - CDS 2630585 - 2630896 429 ## COG3951 Rod binding protein 2428 1326 Op 2 9/0.036 - CDS 2630896 - 2632017 1260 ## COG1706 Flagellar basal-body P-ring protein 2429 1326 Op 3 9/0.036 - CDS 2632032 - 2632778 692 ## COG2063 Flagellar basal body L-ring protein 2430 1326 Op 4 8/0.048 - CDS 2632800 - 2633585 961 ## COG4786 Flagellar basal body rod protein 2431 1326 Op 5 8/0.048 - CDS 2633616 - 2634353 858 ## COG4787 Flagellar basal body rod protein 2432 1326 Op 6 16/0.000 - CDS 2634363 - 2635565 1424 ## COG1749 Flagellar hook protein FlgE 2433 1326 Op 7 9/0.036 - CDS 2635592 - 2636479 1113 ## COG1843 Flagellar hook capping protein 2434 1326 Op 8 24/0.000 - CDS 2636479 - 2636910 512 ## COG1558 Flagellar basal body rod protein 2435 1326 Op 9 . - CDS 2636913 - 2637260 341 ## COG1815 Flagellar basal body protein + Prom 2637245 - 2637304 3.0 2436 1327 Op 1 . + CDS 2637343 - 2638110 439 ## COG1261 Flagellar basal body P-ring biosynthesis protein 2437 1327 Op 2 . + CDS 2638210 - 2638497 234 ## ROD_03031 lateral flagellar anti-sigma factor 28 protein 2438 1327 Op 3 . + CDS 2638510 - 2638938 389 ## ROD_03021 lateral flagellar chaperone protein + Prom 2638946 - 2639005 4.9 2439 1328 Op 1 . + CDS 2639073 - 2640017 750 ## ROD_03011 lateral flagellar associated protein + Term 2640026 - 2640057 3.2 2440 1328 Op 2 . + CDS 2640074 - 2642635 2067 ## COG3306 Glycosyltransferase involved in LPS biosynthesis + Term 2642657 - 2642696 7.3 - Term 2642650 - 2642679 0.4 2441 1329 Op 1 . - CDS 2642688 - 2643944 215 ## CKO_02888 hypothetical protein 2442 1329 Op 2 . - CDS 2643981 - 2646077 351 ## CKO_02890 hypothetical protein 2443 1329 Op 3 . - CDS 2646085 - 2646522 268 ## COG0615 Cytidylyltransferase 2444 1329 Op 4 . - CDS 2646486 - 2646929 518 ## ROD_02961 lateral flagellar export/assembly protein 2445 1329 Op 5 13/0.013 - CDS 2646932 - 2648272 1271 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase 2446 1329 Op 6 15/0.010 - CDS 2648265 - 2648975 911 ## COG1317 Flagellar biosynthesis/type III secretory pathway protein 2447 1329 Op 7 19/0.000 - CDS 2648979 - 2649995 1381 ## COG1536 Flagellar motor switch protein 2448 1329 Op 8 9/0.036 - CDS 2649973 - 2651655 1735 ## COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein 2449 1329 Op 9 2/0.602 - CDS 2651660 - 2652013 300 ## COG1677 Flagellar hook-basal body protein 2450 1329 Op 10 . - CDS 2652061 - 2653047 729 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - Prom 2653229 - 2653288 10.4 + Prom 2653404 - 2653463 6.7 2451 1330 Op 1 . + CDS 2653642 - 2654505 535 ## ROD_02331 lateral flagellar C-ring switch protein 2452 1330 Op 2 2/0.602 + CDS 2654498 - 2654869 565 ## COG1886 Flagellar motor switch/type III secretory pathway protein 2453 1330 Op 3 16/0.000 + CDS 2654866 - 2655624 806 ## COG1338 Flagellar biosynthesis pathway, component FliP 2454 1330 Op 4 17/0.000 + CDS 2655637 - 2655909 298 ## COG1987 Flagellar biosynthesis pathway, component FliQ 2455 1330 Op 5 10/0.031 + CDS 2655911 - 2656693 745 ## COG1684 Flagellar biosynthesis pathway, component FliR 2456 1330 Op 6 13/0.013 + CDS 2656683 - 2657822 1180 ## COG1377 Flagellar biosynthesis pathway, component FlhB 2457 1330 Op 7 . + CDS 2657806 - 2659899 2283 ## COG1298 Flagellar biosynthesis pathway, component FlhA + Term 2659908 - 2659943 5.8 2458 1331 Tu 1 . - CDS 2659937 - 2660698 626 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 2660753 - 2660812 5.3 + Prom 2660772 - 2660831 6.5 2459 1332 Tu 1 . + CDS 2661048 - 2661788 658 ## COG3034 Uncharacterized protein conserved in bacteria + Term 2661799 - 2661832 2.1 - Term 2661660 - 2661711 3.2 2460 1333 Op 1 . - CDS 2661759 - 2662526 662 ## COG0121 Predicted glutamine amidotransferase - Prom 2662582 - 2662641 2.6 2461 1333 Op 2 . - CDS 2662689 - 2663267 708 ## COG0279 Phosphoheptose isomerase - Prom 2663427 - 2663486 6.1 + Prom 2663385 - 2663444 5.2 2462 1334 Tu 1 . + CDS 2663507 - 2665951 2790 ## COG1960 Acyl-CoA dehydrogenases + Term 2665970 - 2666000 3.3 + Prom 2665975 - 2666034 5.3 2463 1335 Op 1 . + CDS 2666060 - 2666827 660 ## COG0388 Predicted amidohydrolase + Term 2666841 - 2666883 1.2 2464 1335 Op 2 . + CDS 2667011 - 2667421 447 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein + Term 2667429 - 2667466 7.1 - Term 2667348 - 2667383 -1.0 2465 1336 Op 1 . - CDS 2667437 - 2668156 452 ## ECL_00059 hypothetical protein 2466 1336 Op 2 . - CDS 2668158 - 2669822 1298 ## COG3307 Lipid A core - O-antigen ligase and related enzymes 2467 1336 Op 3 4/0.402 - CDS 2669827 - 2670369 450 ## COG3539 P pilus assembly protein, pilin FimA 2468 1336 Op 4 4/0.402 - CDS 2670379 - 2671443 910 ## COG3539 P pilus assembly protein, pilin FimA 2469 1336 Op 5 7/0.082 - CDS 2671440 - 2672045 585 ## COG3539 P pilus assembly protein, pilin FimA 2470 1336 Op 6 10/0.031 - CDS 2672058 - 2672834 643 ## COG3121 P pilus assembly protein, chaperone PapD 2471 1336 Op 7 6/0.128 - CDS 2672861 - 2675332 2462 ## COG3188 P pilus assembly protein, porin PapC 2472 1336 Op 8 4/0.402 - CDS 2675374 - 2675829 124 ## COG3539 P pilus assembly protein, pilin FimA - Prom 2675881 - 2675940 1.9 2473 1337 Tu 1 . - CDS 2675992 - 2676540 530 ## COG3539 P pilus assembly protein, pilin FimA - Prom 2676567 - 2676626 5.2 + Prom 2676903 - 2676962 9.7 2474 1338 Op 1 . + CDS 2677185 - 2677973 316 ## ROD_35181 putative transcriptional regulator 2475 1338 Op 2 . + CDS 2677975 - 2678493 324 ## gi|291085854|ref|ZP_06571226.1| hypothetical protein CIT292_08676 + Term 2678510 - 2678545 2.6 - TRNA 2678648 - 2678724 90.0 # Asp GTC 0 0 - Term 2678595 - 2678640 12.3 2476 1339 Tu 1 . - CDS 2678858 - 2679595 618 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 2679632 - 2679691 3.6 2477 1340 Tu 1 . + CDS 2679651 - 2680118 460 ## COG0328 Ribonuclease HI + Term 2680134 - 2680180 4.2 - Term 2680030 - 2680067 0.1 2478 1341 Tu 1 . - CDS 2680115 - 2680837 505 ## COG0500 SAM-dependent methyltransferases - Prom 2680868 - 2680927 2.9 2479 1342 Tu 1 . + CDS 2680871 - 2681626 371 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Prom 2681665 - 2681724 2.0 2480 1343 Tu 1 . + CDS 2681836 - 2683056 804 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) + Term 2683072 - 2683112 6.5 - Term 2683063 - 2683097 3.5 2481 1344 Op 1 4/0.402 - CDS 2683106 - 2683876 692 ## COG0500 SAM-dependent methyltransferases 2482 1344 Op 2 1/0.738 - CDS 2683955 - 2684755 540 ## COG3021 Uncharacterized protein conserved in bacteria - Prom 2684814 - 2684873 4.1 2483 1345 Tu 1 . - CDS 2684887 - 2686062 1396 ## COG2814 Arabinose efflux permease - Prom 2686092 - 2686151 4.4 + Prom 2686067 - 2686126 3.4 2484 1346 Tu 1 . + CDS 2686167 - 2687081 669 ## COG0583 Transcriptional regulator + Term 2687143 - 2687183 2.2 - Term 2687038 - 2687067 2.1 2485 1347 Tu 1 . - CDS 2687103 - 2687906 1051 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 2687988 - 2688047 4.1 2486 1348 Tu 1 . - CDS 2688063 - 2690990 1451 ## COG3209 Rhs family protein - Prom 2691080 - 2691139 2.3 2487 1349 Tu 1 3/0.500 - CDS 2691160 - 2693274 1500 ## COG3501 Uncharacterized protein conserved in bacteria - Term 2693444 - 2693481 9.4 2488 1350 Tu 1 . - CDS 2693489 - 2694007 584 ## COG3157 Hemolysin-coregulated protein (uncharacterized) + Prom 2694380 - 2694439 8.1 2489 1351 Tu 1 6/0.128 + CDS 2694643 - 2695146 411 ## COG3516 Uncharacterized protein conserved in bacteria + Prom 2695278 - 2695337 1.9 2490 1352 Op 1 5/0.226 + CDS 2695437 - 2696909 1216 ## COG3517 Uncharacterized protein conserved in bacteria 2491 1352 Op 2 8/0.048 + CDS 2696906 - 2697322 196 ## COG3518 Uncharacterized protein conserved in bacteria 2492 1352 Op 3 9/0.036 + CDS 2697327 - 2699180 821 ## COG3519 Uncharacterized protein conserved in bacteria 2493 1352 Op 4 6/0.128 + CDS 2699144 - 2700232 701 ## COG3520 Uncharacterized protein conserved in bacteria 2494 1352 Op 5 6/0.128 + CDS 2700245 - 2701546 1121 ## COG3456 Uncharacterized conserved protein, contains FHA domain 2495 1352 Op 6 8/0.048 + CDS 2701543 - 2702076 492 ## COG3521 Uncharacterized protein conserved in bacteria 2496 1352 Op 7 8/0.048 + CDS 2702079 - 2703410 792 ## COG3522 Uncharacterized protein conserved in bacteria 2497 1352 Op 8 4/0.402 + CDS 2703415 - 2704179 758 ## COG3455 Uncharacterized protein conserved in bacteria 2498 1352 Op 9 . + CDS 2704188 - 2706908 1142 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 2499 1352 Op 10 . + CDS 2706905 - 2707633 485 ## SG1033 hypothetical protein 2500 1352 Op 11 5/0.226 + CDS 2707635 - 2709044 1016 ## COG3515 Uncharacterized protein conserved in bacteria 2501 1352 Op 12 5/0.226 + CDS 2709065 - 2712586 2901 ## COG3523 Uncharacterized protein conserved in bacteria 2502 1352 Op 13 2/0.602 + CDS 2712597 - 2713955 1011 ## COG3515 Uncharacterized protein conserved in bacteria 2503 1352 Op 14 . + CDS 2713978 - 2714457 260 ## COG3157 Hemolysin-coregulated protein (uncharacterized) 2504 1352 Op 15 . + CDS 2714483 - 2714650 97 ## + Prom 2715266 - 2715325 3.1 2505 1353 Tu 1 . + CDS 2715362 - 2715820 74 ## SG1025 hypothetical protein + Prom 2716232 - 2716291 7.3 2506 1354 Op 1 . + CDS 2716393 - 2716833 120 ## SEN1000 hypothetical protein 2507 1354 Op 2 . + CDS 2716843 - 2717208 142 ## SeAg_B1090 hypothetical protein 2508 1355 Tu 1 . - CDS 2718400 - 2719227 228 ## CKO_04348 hypothetical protein - Prom 2719272 - 2719331 7.2 + Prom 2721144 - 2721203 3.4 2509 1356 Tu 1 . + CDS 2721234 - 2723999 1017 ## COG3468 Type V secretory pathway, adhesin AidA + Term 2724180 - 2724217 5.1 - TRNA 2724250 - 2724326 92.8 # Asp GTC 0 0 - 5S_RRNA 2724377 - 2724487 100.0 # AM933172 [R:3448609..3448731] # 5S ribosomal RNA # Salmonella enterica subsp. enterica serovar Enteritidis str. # P125109 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Enteritidis. Predicted protein(s) >gi|283548478|gb|GG730299.1| GENE 1 908 - 2206 1192 432 aa, chain + ## HITS:1 COG:STM2654 KEGG:ns NR:ns ## COG: STM2654 COG0477 # Protein_GI_number: 16765974 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 16 432 17 433 433 707 92.0 0 MADSSVTENGALADGDTRRRIWAIVGASSGNLVEWFDFYIYSFCSLYFAHIFFPSGNTTT QLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCMGSLVIACLPGYETIG TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAIEGKKGFYASFQYVTLIGGQLLALLVV VILQQTLEDSALREWGWRIPFALGAVLAIVALWLRRQLDETSKQDVRALKEAGSLKGLWR NRKAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALCVFMLVQPLFG ALSDKIGRRTSMLCFGALATIFTVPILTALQSVTSPYVAFALVMCALLIVSFYTSISGIL KAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSVGMETTFFWYVTALAVVAFLVS LMLHGKGKGLRL >gi|283548478|gb|GG730299.1| GENE 2 2203 - 2538 339 111 aa, chain - ## HITS:1 COG:STM2653 KEGG:ns NR:ns ## COG: STM2653 COG5544 # Protein_GI_number: 16765973 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Salmonella typhimurium LT2 # 5 111 1 107 107 153 77.0 7e-38 METTVRLFILTSILTISGCSHMANDQWSGQDKAQHFIASAMLAAAGNEYALHQGYSRDRS AAIGLMFSVSLGASKELWDSRPAGSGWSWKDFAWDVAGASAGYTIWQLAHY >gi|283548478|gb|GG730299.1| GENE 3 2571 - 3926 1315 451 aa, chain - ## HITS:1 COG:STM2652 KEGG:ns NR:ns ## COG: STM2652 COG1502 # Protein_GI_number: 16765972 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Salmonella typhimurium LT2 # 1 431 1 431 451 846 95.0 0 MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPANFRETLLEKIASATRRICIIALYLEQ DDGGKGILDALYAAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGID VPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYQLIRNAQMA DIMFNWVAQNLMNGRGVNRLDDINRPKSPEIKNDIRLYRQELRDASFHFQGDADNEQLSV TPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGD KTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKG MWVDDKWMLLTGNNLNPRAWRLDLENAILIHDPKQELTPQRDKELELIRTHTTVVKHYRD LQSIADYPVKVRKLIRRLRRIRIDRLISRIL >gi|283548478|gb|GG730299.1| GENE 4 4041 - 6701 2137 886 aa, chain - ## HITS:1 COG:STM2651_1 KEGG:ns NR:ns ## COG: STM2651_1 COG1042 # Protein_GI_number: 16765971 # Func_class: C Energy production and conversion # Function: Acyl-CoA synthetase (NDP forming) # Organism: Salmonella typhimurium LT2 # 1 709 1 709 709 1313 93.0 0 MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAW PNINSLPFSPDLAVLCTNASRNLALLEALGEKGCKTCIILSAPAAQHADLLACASRYKIR LLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQREMGFSYFIAL GDSLDIDVDELLDYLARDSKTSAILLYLEHLSDARRFVSAARSASRNKPILVIKSGRSPA AQRLLRTSAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAAP AALALDELWSKNGKLATLSEETCQKLRDALPEHIDIANPLDLRDDASSEHYVKTLDILLA SQDFDALMVIHSPSAAAPGTESAQALIEAVKHHPRGKFVSLLTNWCGEFSSQEARRLFSE AGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPDSLTANTTEAHHLLQQAIAEGATS LDTHEVQPILQAYGLHTLPTWIASDSAEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVML YLRTATEVQQAANAIFDRVKMAWPQARIHGLLVQSMANRAGAQELRVVVEHDPVFGPLIM LGEGGVEWRPEEQAVVALPPLNMNLARYLVIQGIKNKKIRARSALRPLDIAGLSQLLVQV SNLIVDCPEIQRLDIHPLLASGGEFTALDVTLDIAPFTGDNESRLAVRPYPHQLEEWVEM KNGERCLFRPILPEDEPHLQQFISQVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMA FVAVRCKDNHEEILGVTRAISDPDNIDAEFAVLVRSDLKGFGLGRRLMEKLIAYTRDHGL RRLNGITMPNNRGMVALARKLGFVVDVQLEEGIVGLTLNLAQFEES >gi|283548478|gb|GG730299.1| GENE 5 6738 - 7436 476 232 aa, chain - ## HITS:1 COG:ECs3449 KEGG:ns NR:ns ## COG: ECs3449 COG3148 # Protein_GI_number: 15832703 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 232 9 240 240 397 85.0 1e-111 MTDNAVLQLRAERIARATRPFLARGNRIRRCQRCLLPLKLCLCATLVPSEAKSRFCLVMF DTEPMKPSNTGRLIADILPNTAAFQWSRTEPPQALLDLVKNPDYQPMVVFPASYAGEERE VIFTPPTGKPPLFIVLDGTWPEARKMFRKSPYLDNLPVISVDLSRLSAYHLRGVHAEGQY CTAEVAIALLDLAGDTQAAEGLSDLFTRFKTRYLAGKTQHQGSVTTGSAESV >gi|283548478|gb|GG730299.1| GENE 6 7507 - 7926 493 139 aa, chain - ## HITS:1 COG:STM2649 KEGG:ns NR:ns ## COG: STM2649 COG0526 # Protein_GI_number: 16765969 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 1 139 1 139 139 277 92.0 4e-75 MNTVCTSCQAINRIPDDRVQEAAKCGRCGHDLFDGEVINATGETLDKLLKDDLPVVVDFW APWCGPCRNFAPIFEDVAEERSGKVRFVKVNTEAERELSARFGIRSIPTIMIFRKGEIVD MLNGAVPKAPFDSWLNESL >gi|283548478|gb|GG730299.1| GENE 7 8134 - 9213 1084 359 aa, chain + ## HITS:1 COG:STM2648 KEGG:ns NR:ns ## COG: STM2648 COG0566 # Protein_GI_number: 16765968 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Salmonella typhimurium LT2 # 1 359 1 345 345 578 84.0 1e-165 MSDELKNKNGKVKVMYVRSDDDSDKRTQNPRTGKGGGRPGTSRAEGGRRPARDDRKGPNS ERGRERGRDRDVERDRRREDSPWRTVSRAPNDDAADKADHGGISGKSFIDPEVLRRQRAE ETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEAELAKAS GTEHHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCAHFGVKGV VVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRHAGYTVVMTSSVKGKPLFTT TLPEKMVLVLGREREALPEAACSADDLCVAIDGTGNVETLNVSVATGVLLAEWWRQNKA >gi|283548478|gb|GG730299.1| GENE 8 9247 - 9936 582 229 aa, chain - ## HITS:1 COG:ung KEGG:ns NR:ns ## COG: ung COG0692 # Protein_GI_number: 16130505 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Escherichia coli K12 # 1 229 1 229 229 444 94.0 1e-125 MATELTWHDVLAEEKQQPYFVNTLQTVAGERQSGMTIYPPQKDVFNAFRFTELGDVKVVI LGQDPYHGPGQAHGLAFSVRPGIATPPSLLNMYKELETTIPGFTRPTHGYLESWARQGVL LLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDAKRH HVLKAPHPSPLSAHRGFFGCNHFVLANEWLEKRGEKPIDWVPVLPAESE >gi|283548478|gb|GG730299.1| GENE 9 10254 - 10637 469 127 aa, chain + ## HITS:1 COG:STM2646 KEGG:ns NR:ns ## COG: STM2646 COG3445 # Protein_GI_number: 16765966 # Func_class: R General function prediction only # Function: Acid-induced glycyl radical enzyme # Organism: Salmonella typhimurium LT2 # 1 127 1 127 127 234 93.0 4e-62 MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGFNADEVVAVGKLGEIEYREVPVD VQPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIA RTFTESL >gi|283548478|gb|GG730299.1| GENE 10 10716 - 11303 428 195 aa, chain - ## HITS:1 COG:yfiK KEGG:ns NR:ns ## COG: yfiK COG1280 # Protein_GI_number: 16130503 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1 195 1 195 195 297 85.0 8e-81 MTPTLLSAFWTYTLITALTPGPNNILALSAATSHGFRQSTRVLAGMSLGFLIVMLICAGI SFSLAVMDPAIIHWLSWAGAAYILWLALKIATSPASDDDLQSEPISFWASFGLQFVNVKI ILYGITALSTFVLPYTQEVHWLIGVSILLALIGTFGNACWALAGHLFQRLFRRYGRQLNI ILALLLVYCAVKIFY >gi|283548478|gb|GG730299.1| GENE 11 11406 - 12302 534 298 aa, chain + ## HITS:1 COG:STM2644 KEGG:ns NR:ns ## COG: STM2644 COG0583 # Protein_GI_number: 16765964 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 298 1 299 299 474 79.0 1e-133 MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQELSVQLFEKIGRRMCLTSE GKRLMPHIHDLTRVMASIRQSAQQDAQPSGDLRVATGETLLAYKMPQVLQRFKQRAPDVR LSLQSLNCYVIRDALLSDEVDLGVFYRVGNDDALELMPLGDQSLALVASPLLQHVDFTRH HQHIPCSFIINEPQCIFRQRFEGLLRKRQITLENTIELWSIESIKQCVSANLGISFLPRF AVEKELYSGELIELPFSEQPELITALCGYHAGKVVSPAMRVFIECIEESFAIHEKMPG >gi|283548478|gb|GG730299.1| GENE 12 12320 - 13648 1292 442 aa, chain - ## HITS:1 COG:ECs3442 KEGG:ns NR:ns ## COG: ECs3442 COG0513 # Protein_GI_number: 15832696 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1 442 1 443 444 714 90.0 0 MTVTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL PALQHLLDFPRKKSGPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHM EVFSENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRW RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAMLI HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVN VLVATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLL GKASRYIDEPLKARVIDELRPTTRAPSEKSNGKPSKKVLAKRAEKKAKEKEKPRVKKRHR DAKNIGKRRKPSGTATQQSDKE >gi|283548478|gb|GG730299.1| GENE 13 13779 - 14516 619 245 aa, chain + ## HITS:1 COG:yfiC KEGG:ns NR:ns ## COG: yfiC COG4123 # Protein_GI_number: 16130500 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Escherichia coli K12 # 1 245 41 285 285 446 86.0 1e-125 MPQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRILDIGTGSGLLAL MLAQRTDDNVMIDAVELNVDAAQQAQENIAQSPWMHRVNVHTEDAQLWIPRQTVRFDLII SNPPYYEQGVECATPQREQARYTTTLDHQALLTLAADSITEDGFFCVVLPEQIGNAFTQQ ALSMGWHLRLRTDVAETEARLPHRVLLAFSPRAGECFSDRLVIRGPDQRYSEGYTALTQA FYLFM >gi|283548478|gb|GG730299.1| GENE 14 14501 - 16123 1364 540 aa, chain - ## HITS:1 COG:nadB KEGG:ns NR:ns ## COG: nadB COG0029 # Protein_GI_number: 16130499 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Escherichia coli K12 # 1 540 1 540 540 1066 93.0 0 MNTTPELSCDVLIIGSGAAGLSLALRLAEKHQVIVLSKGPVSEGSTFYAQGGIAAVFDET DSIDSHVEDTLIAGAGLCDRHAVEFVASNARTCVQWLIDQGVLFDTQVQPNGEESYHLTR EGGHSHRRILHAADATGKEVETTLVSQAQNHPNIRVLERSNAVDLIVSDKIGLPGTRRVV GAWIWNRNKEAVETCHAKSVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEF NQFHPTALYHPQARNFLLTEALRGEGAHLKRPDGSRFMPDFDERGELAPRDIVARAIDHE MKRLGADCMFLDISHKPEEFVRQHFPMIYEKLLGLGIDLTKEPVPIVPAAHYTCGGVMVD DFGRTDVDGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDIDRRMPYARGVSTLP CWDESRVENPDELVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH FRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHYTLDYPEQLAESGPSILSPLSHYINR >gi|283548478|gb|GG730299.1| GENE 15 16548 - 17123 293 191 aa, chain + ## HITS:1 COG:ECs3439 KEGG:ns NR:ns ## COG: ECs3439 COG1595 # Protein_GI_number: 15832693 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 358 98.0 3e-99 MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRA LDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDIDAIEAENYESGGALKEISNPEN LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA IDNKVQPLIRR >gi|283548478|gb|GG730299.1| GENE 16 17155 - 17805 487 216 aa, chain + ## HITS:1 COG:STM2639 KEGG:ns NR:ns ## COG: STM2639 COG3073 # Protein_GI_number: 16765959 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Salmonella typhimurium LT2 # 1 216 1 216 216 315 93.0 3e-86 MQKEKLSALMDGETLDTELLKELAHDPEMQKTWESYHLIRDSMRGDTADVLHFDISARVM AAIEDEPVRQTAPLIPEAQPAPHQWQKMPFWKKMRPWAAQLTQMGVAACVSLAVIVGVQH YNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSDATASGGQQQQVQEQRRRINAMLQDY ELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ >gi|283548478|gb|GG730299.1| GENE 17 17805 - 18761 673 318 aa, chain + ## HITS:1 COG:ECs3437 KEGG:ns NR:ns ## COG: ECs3437 COG3026 # Protein_GI_number: 15832691 # Func_class: T Signal transduction mechanisms # Function: Negative regulator of sigma E activity # Organism: Escherichia coli O157:H7 # 1 318 1 318 318 572 91.0 1e-163 MKQLWFAMSLVAGSLFFSVNASATPASGALLQQMNLASQSLTYELSFVSINKQGVESLRY RHARQDNRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLVYTDFK RLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTETKLPMRVDLLDRDGETL EQFRVIAFTVNSGVSDSMQTLAKANLPPLLSVPAGEKTNFNWSPSWLPQGFSEISSSRRP LPTMDNMPIESRLYSDGLFSFSVNVNRASQNSTDQLLRTGRRTVSTSVRDNAEITIVGEL PPQTAKRIADNIKFRAAQ >gi|283548478|gb|GG730299.1| GENE 18 18758 - 19222 420 154 aa, chain + ## HITS:1 COG:STM2637 KEGG:ns NR:ns ## COG: STM2637 COG3086 # Protein_GI_number: 16765957 # Func_class: T Signal transduction mechanisms # Function: Positive regulator of sigma E activity # Organism: Salmonella typhimurium LT2 # 1 152 1 152 159 267 93.0 7e-72 MIKEWATVVSWQNGLATVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPSDEPLA PGQKVELGIAEGSLLGSAMLVYMSPLAGLFLFAALFQVLFGSDLAALSGAVLGGVGGFLI ARGYSRKLAEREAWQPVILNVALPPDLIRVETRQ >gi|283548478|gb|GG730299.1| GENE 19 19503 - 21302 2311 599 aa, chain + ## HITS:1 COG:STM2583 KEGG:ns NR:ns ## COG: STM2583 COG0481 # Protein_GI_number: 16765903 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Salmonella typhimurium LT2 # 1 599 1 599 599 1159 98.0 0 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVT LDFKSSDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVTDVLERLVRDI PPPEGDPEGPLQALIIDSWFDNYLGVVSLVRIKNGTMRKGDKIKVMSTGQVYNADRLGIF TPKQVDRTELKCGEVGWLVCAIKDILGAPVGDTLTSARNPAEKALPGFKKVKPQVYAGLF PVSSDDYENFRDALGKLSLNDASLFYEPESSTALGFGFRCGFLGLLHMEIIQERLEREYD LDLITTAPTVVYEVETTAKETIYVDSPSKLPPLNNIYELREPIAECHMLLPQAYLGNVIT LCIEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM VRVDVLINNERVDALALITHRDNSQSRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARS TVKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDSK >gi|283548478|gb|GG730299.1| GENE 20 21318 - 22292 967 324 aa, chain + ## HITS:1 COG:ECs3434 KEGG:ns NR:ns ## COG: ECs3434 COG0681 # Protein_GI_number: 15832688 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Escherichia coli O157:H7 # 1 324 1 324 324 625 94.0 1e-179 MANMFALILVIATLVTGILWCVDKFIFAPKRRERQAAAQAAVGDSLDKATLKKVASKPGW LETGASVFPVLAIVLVVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTL IETGHPKRGDIVVFKYPEDPRLDYIKRAVGLPGDKVTYDPVAKEVTIQPGCSSGQACENA LPVTYSDVQPSDFVQTFARRNGGEATSGFFEVPLSETKENGIRLTERKETLGEVTHRILM VPIAQDQVGMYYRQPGQQLATWIVPPGHYFMMGDNRDNSADSRYWGFVPEANLVGKATAI WMSFDKQEGEWPTGVRLSRIGGIH >gi|283548478|gb|GG730299.1| GENE 21 22560 - 23240 626 226 aa, chain + ## HITS:1 COG:STM2581 KEGG:ns NR:ns ## COG: STM2581 COG0571 # Protein_GI_number: 16765901 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Salmonella typhimurium LT2 # 1 226 1 226 226 420 99.0 1e-117 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSFVIANALYHRF PRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALI GGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVR GEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLELE >gi|283548478|gb|GG730299.1| GENE 22 23237 - 24142 1063 301 aa, chain + ## HITS:1 COG:era KEGG:ns NR:ns ## COG: era COG1159 # Protein_GI_number: 16130491 # Func_class: R General function prediction only # Function: GTPase # Organism: Escherichia coli K12 # 1 300 1 300 301 588 97.0 1e-168 MSIDKTYCGFIAIVGRPNVGKSTLLNNLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLRDGKAPVI LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTVAGIVRKHLPEAIHHF PEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFISNERGGYDINGLILVERE GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYGDD Q >gi|283548478|gb|GG730299.1| GENE 23 24343 - 25053 575 236 aa, chain + ## HITS:1 COG:STM2579 KEGG:ns NR:ns ## COG: STM2579 COG1381 # Protein_GI_number: 16765899 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Salmonella typhimurium LT2 # 1 235 1 235 242 435 94.0 1e-122 MEGWQRAFVLHSRPWSETSLVLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRF GGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELISRVLEYETRFSELFFDYLNCIQAL AGATGSPEPALRRFELALLGHLGYGVDFLHCAGSGDEVDDTMTYRYREEKGFIASVVIDN NTFTGHQLKALANREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRK >gi|283548478|gb|GG730299.1| GENE 24 25069 - 25800 929 243 aa, chain + ## HITS:1 COG:ECs3430 KEGG:ns NR:ns ## COG: ECs3430 COG0854 # Protein_GI_number: 15832684 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Escherichia coli O157:H7 # 1 243 1 243 243 432 97.0 1e-121 MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIVEQAGADGITVHLREDRRHITDRDVRI LRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDAC KRLADAGILVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQASELARIAKAAT FAASLGLKVNAGHGLTYHNVKAIARIPEMHELNIGHAIIGRAVMSGLKDAVVEMKRLMLE ARG >gi|283548478|gb|GG730299.1| GENE 25 25800 - 26180 402 126 aa, chain + ## HITS:1 COG:STM2577 KEGG:ns NR:ns ## COG: STM2577 COG0736 # Protein_GI_number: 16765897 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Salmonella typhimurium LT2 # 1 126 1 126 126 233 96.0 5e-62 MAILGLGTDIVEIARIEAVISRSGDRLARRVLSDNEWAIWEAHQQPVRFLAKRFAVKEAA AKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKLGVAHMHVTLADERHYACA TVIIES >gi|283548478|gb|GG730299.1| GENE 26 26177 - 26437 211 86 aa, chain - ## HITS:1 COG:STM2576 KEGG:ns NR:ns ## COG: STM2576 COG1145 # Protein_GI_number: 16765896 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Salmonella typhimurium LT2 # 1 86 1 86 86 148 93.0 2e-36 MALLITKKCINCDMCEPECPNEAISMGDSIYKINSDKCTECVGHYDTPTCQKVCPIPNTI LKDPAHLESEEQLWDKFVQMHHADKI >gi|283548478|gb|GG730299.1| GENE 27 26493 - 27341 987 282 aa, chain - ## HITS:1 COG:STM2572 KEGG:ns NR:ns ## COG: STM2572 COG1737 # Protein_GI_number: 16765892 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 282 1 282 282 481 93.0 1e-136 MNCLIRIRQRYPDLAQSDKKLADYLLAQPDTARHLSSQQLAFEAGVSQSSVVKFAQKLGF KGFPALKLAISEALASNPTPHSVPVHNQIRGDDPMRLVGEKLIQENVAAMHATLDINSEE KLLESVTMLRSAQRIILTGIGASGLVAQNFAWKLLKIGFNAVVERDMHALLATVQALSPG DLLLAISYTGERRELNLAADETLRTGAKILAITGFTPNALQQRASHCLYTIAEEQATRSA AISSTHAQMMLTDLLFMALVQQDLEHAPERIRHSEALVKKLV >gi|283548478|gb|GG730299.1| GENE 28 27459 - 28352 1108 297 aa, chain + ## HITS:1 COG:STM2571 KEGG:ns NR:ns ## COG: STM2571 COG2103 # Protein_GI_number: 16765891 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Salmonella typhimurium LT2 # 1 296 1 296 297 450 89.0 1e-126 MNLGALVSETRNPQTMDLDALSTLELVHRFNQQDTLVAEAVKATLPEVALAVDAAADALK AGGRIIYMGAGTSGRLGVLDASECPPTFGVPHGLVVGLIAGGPGALLKAVEGAEDNPQLG ADDLRTLNLTAQDLVVGLAASGRTPYVIGGLKYARTVGCTTVAISCNPDSPVAHEADIAI SPVVGPEALTGSTRLKSGTAQKLVLNMISTGAMVKFGKVYQNLMVDMQATNVKLVDRACR MVVEATGITREQAQALLKQTDFDVKPAILMALTGIDAAAAREKLAAHQGFLRAALER >gi|283548478|gb|GG730299.1| GENE 29 28362 - 29726 1480 454 aa, chain + ## HITS:1 COG:STM2570_2 KEGG:ns NR:ns ## COG: STM2570_2 COG1263 # Protein_GI_number: 16765890 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Salmonella typhimurium LT2 # 98 454 1 357 357 594 95.0 1e-169 MDKTAALASDILLGVGGEKNILRLENCMTRVRVEVQDDGQLDIPRLKQLPGVSGYVKQGV QHQIIVGPGKAAKVVDAMRSLIADGGERADVNDIERTKSEAKAKYKAPMSDALRKLANVF IPLIPAFIASGLITGIINILKRPDIVGDFATHYPNLLGLMGIFGSAVFAIMNILVGVNTA KVFGGSLAMGGVMAGILSSPQLAQITLFGEALQPGRGGVIAVLLVVALMCWIERKFRELL PESLELILNPLLTTIITGAIAIVALQPLGGWISESIAHGASWAIDRGGFLVGAVLAGTFL PLVLTGLHQGLVPIHVELVQAHGYNALFPILAMAGVGQIGAAIAVLMKTRNARLKKVIKG ALPVGLLGIGEPLIFGVTLPLGKPFIGACLGGAVGGALISYWKVATVITFGISGLPLALT IVAGKVMFYLLGYLVAVIAGFLFTWLLGFNDPEE >gi|283548478|gb|GG730299.1| GENE 30 29730 - 30365 458 211 aa, chain + ## HITS:1 COG:STM2569 KEGG:ns NR:ns ## COG: STM2569 COG0560 # Protein_GI_number: 16765889 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 355 87.0 4e-98 MTNHQRRVVFFDLDGTLHQQDMFGSFIRYLLRRQPLNALLVLPLLPVIALALLIKGRAAR WPMSLLLWGCTFGRSEAHLKAHQADFVRWFRNNVTAFPLVQQRLTTYLLSSDADIWLITG SPQSLVEQVYFDTPWLPRVNLIASKMARGYGGWVLPLRCLGHEKVTQLERQIGAPLQLYS GYSDSKQDNPLLSFCQHRWRVTPRGELQQLE >gi|283548478|gb|GG730299.1| GENE 31 30423 - 30920 501 165 aa, chain + ## HITS:1 COG:yfhC KEGG:ns NR:ns ## COG: yfhC COG0590 # Protein_GI_number: 16130484 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Escherichia coli K12 # 1 162 12 173 178 315 93.0 3e-86 MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEI MALRQGGLVLQNYRLLDATLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLMDV LHHPGMNHRVEVTEGVLRDECATLLSDFFRMRRQEIKALKKSANL >gi|283548478|gb|GG730299.1| GENE 32 30961 - 32511 1708 516 aa, chain - ## HITS:1 COG:STM2567 KEGG:ns NR:ns ## COG: STM2567 COG4623 # Protein_GI_number: 16765887 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein # Organism: Salmonella typhimurium LT2 # 1 516 1 514 514 887 87.0 0 MKKLKINYLFIGILALLLAAALWPSIPWFGKADNRIAAIQSRGELRVSTIDSPLTYATLN GKKFGLDYELAQAFANYLGVKLKITVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQ PGPTYYSVSQQLVYRVGQYRPRTLATVNENQLTIAPGHVVVNDLQQLKEKKFPDLSWKVD DKKGTTELLDDVIAGKLDYTIADSVAISLYQRVHPELAVALDVSDEQPVTWFSRLDDDDT LSAALLDFFNSMNEEGSLARLEEKYLGHGDDFDYVDTRTFLRAVDSVLPDLKPLFEKYAQ EIDWRLLAAISYQESHWDAQATSPTGVRGLMMLTKNTAQSLGLTDRTDAEQSISGGARYL QDMMSKVPDTVPEGERIWFALAAYNMGYAHMLDARALTVKTKGNPNSWSDVKQRLPLLSQ KPYYNKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQAQETQQLAQDYPAVSPAEL LGKEKFPLSAFLSQTSSNYLTHSPSLLFSTQKKEEK >gi|283548478|gb|GG730299.1| GENE 33 32772 - 36656 4698 1294 aa, chain + ## HITS:1 COG:ECs3423_1 KEGG:ns NR:ns ## COG: ECs3423_1 COG0046 # Protein_GI_number: 15832677 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Escherichia coli O157:H7 # 1 984 2 985 985 1893 93.0 0 MEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNEDEHAQLARLLKY GPALHSHAPEGKLLLVTPRPGTISPWSSKATDIAHNCGLQQISRLERGVAYYVEASTLTA EQWQEVADVLHDRMMETVFSALNDAEKLFAHHQPAPVASVDLLGAGRQALIDANIRLGLA LADDEIDYLQDAFTRLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGKQQPKSLFKMI KNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHKTGRYDFHQEPAHILMKVETHNHPTA ISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPDRIVT ALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIR ADHVQKGEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRC QEVIDRCWQMGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFQLRDILSDEPGMSPLE IWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGEATEEQHLTLSDSHFDNQPIDMP LDVLLGKTPKMTRDVQTLKAKGDALNRGDISIADAVNRVLHLPTVAEKTFLVTIGDRTVT GMVARDQMVGPWQIPVANCAVTTASLDSYYGEAMSIGERAPVALLDFSASARLAVGEALT NIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSM KTRWQEGNEQREMTSPLSLVITAFARVEDVRHTITPQLSTEDNALLLIDLGRGQNALGAT ALAQVYRQLGDKPADVRNVEQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFTG HCGIEADISTLGDDRLAALFNEELGAVIQVRAADRDAVEAVLAANGLADCVHYLGQAVAG DRFTLTANGQSVFSESRTTLRMWWAETTWQMQRLRDNPECADQEHDAKTNDADPGLNVKL TFDINEDVAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRTG LGNFQALVACGGFSYGDVLGAGEGWAKSILFNNRVRDEFETFFHRPQTLALGVCNGCQMM SNLRELIPGSDLWPRFVRNHSDRFEARFSLVEVTQSPSLLLSDMVGSMMPIAVSHGEGRV EVRDDAHLAQLESKGLVALRYVDNFGKVTETYPANPNGSPNGITSVTNESGRVTIMMPHP ERVFRTVSNSWHPENWGEDSPWMRIFRNARKQLG >gi|283548478|gb|GG730299.1| GENE 34 37124 - 37312 109 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTEGNARYNKAGINPALLWNKAVPNSTFRPEVDMSYADIRCWTAGTLLCVIRSLCSASR RG >gi|283548478|gb|GG730299.1| GENE 35 37389 - 38774 1319 461 aa, chain + ## HITS:1 COG:STM2564 KEGG:ns NR:ns ## COG: STM2564 COG0642 # Protein_GI_number: 16765884 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 15 461 34 480 480 761 87.0 0 MLAFLLILLPLLVLAWQAWQSLNALSAQAALTNRTTLIDARRSEAMTNAALEMERSYRQY CVLDDPTLAKVYQSQRKRYSDMLDAHAGVLPDTKLYQALRQDLNDLAQLQCNNSGPDSVA AARLEAFANANTEMVQATRIVVFSRGQQLQQEIAERGQFFGWQALVLFLVSLAMVLLFTR MIIGPVKGIERMINRLGEGRSLGDSVLFTGPRELRSVGQRIIWLSERLSWLESQRHQFLR HLSHELKTPLASMREGTELLADRVVGPLTPEQKEVVGILDDSSRNLQKLIEQLLDYNRKL ADDDVELESVEIAPLVESVVSAHSLPARGKMIHTDVALEANRCLAEPMLLMSVLDNLYSN AVHYGAESGNIWIRSSLHGSTVYIDVINTGTPIPEAEQTMIFEPFFQGSHQRKGAVKGSG LGLSIARDCIRRMRGKLYLVDDHAQNVCFRIELPLSAAKNH >gi|283548478|gb|GG730299.1| GENE 36 38797 - 39540 418 247 aa, chain + ## HITS:1 COG:no KEGG:ROD_24981 NR:ns ## KEGG: ROD_24981 # Name: not_defined # Def: putative lipoprotein # Organism: C.rodentium # Pathway: not_defined # 1 247 1 238 238 281 63.0 1e-74 MPHVVVRMFKRHFFRRILLASLPCLALVGCVPNAVNPMTGDPSQEKIPSNQLADYLATEC TDIWSLSGQPTESNPLYWLRVMDCADRLMPAQARSEASILMTDTWQGAFRRGILLDNANI TSPERREVVTRLDALSPQIPPQVRPLYQVWLSSQTLHLQLDEERLRYSKLQQTSDSDLDT LRQQQQHLQSQLDLTTRKLENLTDIERQLSTRKPAGSYNPDAPHGNDKLTTPDNEDGATP SADEVTP >gi|283548478|gb|GG730299.1| GENE 37 39537 - 40874 1278 445 aa, chain + ## HITS:1 COG:STM2562 KEGG:ns NR:ns ## COG: STM2562 COG2204 # Protein_GI_number: 16765882 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Salmonella typhimurium LT2 # 1 445 1 445 445 842 96.0 0 MISRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLRVLNREKVDLVISDLRM DEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDG ALEQSAPATDDRWRESIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEVFAQAIHN ASPRSHKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD MPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIVSATHRDLPKAMARGEFREDLYYRLNV VSLKIPALAERTEDIPLLANHLLRQSAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV IEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAAR MAGRNRTEFYKLLSRHELDANDFKE >gi|283548478|gb|GG730299.1| GENE 38 40943 - 41281 523 112 aa, chain + ## HITS:1 COG:ECs3419 KEGG:ns NR:ns ## COG: ECs3419 COG0347 # Protein_GI_number: 15832673 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 187 99.0 6e-48 MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK IEIVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI >gi|283548478|gb|GG730299.1| GENE 39 41383 - 42573 1310 396 aa, chain - ## HITS:1 COG:STM2556_2 KEGG:ns NR:ns ## COG: STM2556_2 COG1018 # Protein_GI_number: 16765876 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Salmonella typhimurium LT2 # 150 396 1 247 247 456 88.0 1e-128 MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNA IAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGSHLLATLDEMFSPGQEVLDAW GKAYGVLAGVFINREAQIYQDNASKTGGWEGTRPFRIVAKTPQSRAITSFEFEPVDGGAV AEYHPGQYLGVWLKPESFPHQEIRQYSLTRKPDGKGYRIAVKREDGGQVSTWLHNHANVG DVVHLAAPAGDFFMDVATDTPVSLISAGVGQTPMLAMLDTLAKAHHTAQVNWFHAAENGD VHAFADEVNELGKLLPRFSAHTWYREPTEADRAKGAFDSVGLMDLHTLEGAISDPAMQFY LCGPVGFMQFAAKQLVGLGVKNENIHYECFGPHKVL >gi|283548478|gb|GG730299.1| GENE 40 42900 - 44153 1720 417 aa, chain + ## HITS:1 COG:STM2555 KEGG:ns NR:ns ## COG: STM2555 COG0112 # Protein_GI_number: 16765875 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Salmonella typhimurium LT2 # 1 417 1 417 417 800 97.0 0 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMN LAQGGHLTHGSPVNFSGKLYNIIPYGIDESGKIDYEDMAKQAKEHKPKMIIGGFSAYSGV VDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL AKGGDEELYKKLNSAVFPSAQGGPLMHVIAAKAVALKEAMEPEFKVYQQQVAKNAKAMVE VFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS GIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNINDEAVIERIKGKVLDICARFPVYA >gi|283548478|gb|GG730299.1| GENE 41 44246 - 45448 1063 400 aa, chain - ## HITS:1 COG:ECs3408 KEGG:ns NR:ns ## COG: ECs3408 COG0446 # Protein_GI_number: 15832662 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 547 70.0 1e-155 MNEQIIAIIGGGQAGAMAAAALRQQGFNGPLHLFSNETHLPYERPPLSKAMLLDDNPQLQ PILPAGWWQEHNVQLHLGVTLREIDRASRTLTLADGQTYRWTQLLLATGAAARPLPLLDA LGDRCFTLRHTGDAERLRGALQPGKSVVIVGAGTIGLELAASATQRGCRVTVVELASTVM GRNAPAPVRDYLLARHRLAGVRMLLNSAIEHAEAGEFLTLTLQNGETLTADAVVYGIGIV ANDELARKAGLETANGIIVDTACTTSDPAIFAAGDVAITRQPDGALARVESWENANSQAQ IAAAAMLNLPLPQKTPGWFWTDQYHDNLQFIGETQGDNWLVRGDSDAQKAIWFNLQDGVI VGAVTLNQGREIRLLRKWIQAKKKPPVAALVDETILLKSL >gi|283548478|gb|GG730299.1| GENE 42 45458 - 46270 979 270 aa, chain - ## HITS:1 COG:hcaB KEGG:ns NR:ns ## COG: hcaB COG1028 # Protein_GI_number: 16130466 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 270 1 270 270 468 90.0 1e-132 MSDLRDNVVFITGGGSGLGLALVERFIEEGALVATLELSPAKVASLRQRFGEHILAIEGN VTCYADYQRAVDRILTTFGKLDCFIGNAGIWDHNASLVNTSAEALESGFHELFNVNVLGY LLGAKACAQALIASEGSIIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAPKVRV NGVGPCGMATDLRGPQALGQNDTSIMQSLTPEKIAAILPLQFFPEPADFTGPYVMLASRR NNRTLSGVMINADAGLGIRGVRHVTAGLDL >gi|283548478|gb|GG730299.1| GENE 43 46267 - 46587 305 106 aa, chain - ## HITS:1 COG:ECs3406 KEGG:ns NR:ns ## COG: ECs3406 COG2146 # Protein_GI_number: 15832660 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1 103 1 103 106 181 83.0 4e-46 MSRIFACSAAELPEGEALRLETSPVIALFHIGGEFYAINDHCSHGNASMSEGYLEDDATV ECPLHAASFCLKTGKALCLPATDPLATYTVHVEGGEVFVDIPEEAR >gi|283548478|gb|GG730299.1| GENE 44 46587 - 47105 597 172 aa, chain - ## HITS:1 COG:ECs3405 KEGG:ns NR:ns ## COG: ECs3405 COG5517 # Protein_GI_number: 15832659 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Small subunit of phenylpropionate dioxygenase # Organism: Escherichia coli O157:H7 # 1 172 1 172 172 276 85.0 1e-74 MRALVSLELHHRISQFMYEEARLLDDWQFRDWLAHLDDDIRYTMRTTVNAQTRDRRKGVQ PPTTWIFNDNKDQLERRIARLETGMAWAEEPPSRTRHMISNLQVSETDQPDVFRVRLNYL LYRAQKERDETFYVGTRVDKVRRLPGDEWRLLEREIVLDQAVITSHNLSILF >gi|283548478|gb|GG730299.1| GENE 45 47093 - 48463 1613 456 aa, chain - ## HITS:1 COG:ECs3404 KEGG:ns NR:ns ## COG: ECs3404 COG4638 # Protein_GI_number: 15832658 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 921 95.0 0 MTTPSNLDIYPLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWLFLAHESQIPKPGDFFN TYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELID VPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTTAPNLRDYLGDIAWYLDGVLDR REGGTEIVGGVQKWTIDCNWKFPAEQFASDQYHALFSHASAVQVLGAKDDGSDKRLGDGQ TARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWVDGEVSSYYRDTYEEAEQRLGKVRA LRLAGHNNIFPTLSWLNGTATLRVWHPRGPDKVEVWAFCIADKAASDEVKAAFENSATRA FGPAGFLEQDDSENWCEIQKLLKGHRARNTNLCLEMGLGQEKRREDGIPGITNYIFSETA ARGMYQRWADLLSSETWQEVHEKTAAYQQEVMKCVR >gi|283548478|gb|GG730299.1| GENE 46 48599 - 49474 962 291 aa, chain + ## HITS:1 COG:ECs3403 KEGG:ns NR:ns ## COG: ECs3403 COG0583 # Protein_GI_number: 15832657 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 288 1 288 296 493 87.0 1e-139 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLETCVGVPLLVRDKRKVALTAA GECFLQDAQAILEQAENAKVRARKTVQEDNHFAIGFVPSAEVNLLPKVLPLFRLKQPDTH IELVSLITTEQEEKILRGELDVGLMRHPIYSPELDYLELIHEPLVVVLPVNHPLANEKAI SAQQLHGVNFVSTDPAYSGALAMIVKNWFQQQKSQPNIVQVATNILVTMNLVGMGLGVTL IPGYMNNFNTGQVVFRPIVGDVPTIALLMAWKKGELKPALRDFITLAQAAD >gi|283548478|gb|GG730299.1| GENE 47 49449 - 52595 1697 1048 aa, chain - ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 81 419 117 444 1087 67 23.0 2e-10 MLQQNRQTINLQGEWRVAIDPQDSGTTEKWFNRRLAASGFHLPGTCAEHRLGERCILQPG LTKEAVQRLRTEYTWLGVAWYQTDIQLPINDQQTLLFLERVMGETQLWVDDICIGHQDSL STPHQFDITRHVSDGLRHQITLRIDNRDSNNIGDWSSTRTEQTQTIWNGIVGRIELQRVD RYALNDLLISMDRQHRLATLNVMKTPAIAGWQDLEIALTLCELDGRCVQREAQSLFTPPD SPAITVEFTLSDKIVLWDEFTPQCYQLTLEIRHREDISAPCAISQKTTGFRQLDVSDGRL KINGVQRFLRGNIDCCVYPLTGYPPTTEAEWSPIFQQLKQHGINHVRFHSWCPPEAAFIC ADREGLYLQVEGPVWMDTWMDFPVGKYPDHYRWLPQEAERIIRTWSIHPSFCFFSNGNEL NGDFQLLRGIVQRLKALQPQILYTLTSNWDRPAADEDDLFIAQSSAGIGVRGQYFLDALV ETTTLNFTAGIQAQSVPVISHEVGQYVVYPNVAEIPRYTGSLVPVNLQRIRDDLAQKHLL PYLNDFIHSSGKLALLLYKMEIEAALRTPGMGGIQLLSLHDFPGQSTATVGILDAFYASK NIIDPADFRHFCCPTVPLVMMPTRFYAREDEFIAEVQIAHYGAAPLRRVTLQIQIIDEHK QPLLTQEYELAEVPIGLLAQPITIHATPFLTLNGRKKLQVTAELLHTPYRNQWDIWVYAK TKVTSLPTDITLCREWSPDLEERLHHGEDILLLPSPGQLKRLAASSWFPVFWSPVHFASK DPCGMVINNQHPLFSHYFPCENYASLEWKALLENSFAMNIDALADCSPLTLLTPNFFHNQ KSTNLFECRAGKGRIMVCTLNIDADLPCDSGKQLKNALYRYLASADFMPEDSLQIDELRA LFTAGGVDTSAAVDLALGKPAQTDSMKSLNYGPLRGNDGNPSTSWVAGDAETGHYWQVDF GEVQRIATTKVVFNENAVYRYVIQSSLDGYNWTVVVNKTHQVAAQQTHQDECHVDTQFLR IVYQGLASGVWAGHQQFSAYANQQPVPA >gi|283548478|gb|GG730299.1| GENE 48 52668 - 52862 141 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283832067|ref|ZP_06351808.1| ## NR: gi|283832067|ref|ZP_06351808.1| YbfN [Citrobacter youngae ATCC 29220] YbfN [Citrobacter youngae ATCC 29220] # 1 64 1 64 64 96 100.0 5e-19 MKKYLSLLLPLLLAGCGSTTPVQQTHSSSETISPMDYQECIQAAMTGNGQAYNEKCDQIL KDSR >gi|283548478|gb|GG730299.1| GENE 49 52877 - 55795 3062 972 aa, chain - ## HITS:1 COG:no KEGG:Pjdr2_0194 NR:ns ## KEGG: Pjdr2_0194 # Name: not_defined # Def: coagulation factor 5/8 type domain protein # Organism: Paenibacillus # Pathway: not_defined # 19 968 29 1021 1022 718 40.0 0 MTLSLKWVGLLFAALLPCAHAAQFSQQGNEVTVRHGDYTLRYHLNSGEGDILWRDTPLIA GFHSEAQLQALTLNSQQASQRSSEWQTINDKRWGQGNKLALTARFADGRTLTTDFWFFDD KPWLLSDMMVSAPTTQTVSRLTPIAAAFADIGVGSDKRIYTTPYTNNFDFGVAPVNRFGL SQNGTDRFADPQEPMVKFNGISHWVTALFDNQNRHGLVAGAATVQKWKSSQQLGEAKQPN APLSQFALYNWGGEQRGTQVASDLFFLGYFSDYRDGLETYGAVYNQGEPGMRWQGKVPVG FNAFYSHDSYGKARDMYAMTDYIARQLKPLGYEYVNMDGGFQPDGYPQGMTAFTSYVHKK GLKAGGYLTPFAIYENWLDLPVDNTGYTHRDACLKDKNGKLIKTYLGSYALDMSHPAAQY IVRRNIKNYIDWGFDYIKLDFLDMGLYEGQHYDPSVNGIQNYRLGMQIMRDEALKAQHPV FLDASISPLLPAAFTQGRRAACDTSLGVADYSGIERQAFNSALSWWSNGTLYRYNDADMF VPEQLLQGDNRSGQRAALRLATAVAMDGGHWLVGDNLPFVDEDRSAWLENKALLALATTG VAARPLRLNNVYHQGEHSPEVLVQRAPDNSVYVSLTNWSDTEKSWQLSAAELGLTGSAPW QVNSLFDGIRWQQTTAEIHYRLAAGETAILHFTHTPQSPVQPPHDLAAGLQLHRADNSFT LTFPRPTRLNQVTIQEPAPFAMRNYTLSWGDGAQWHPLTRGYLVGDRRSVAFPEVNARQI RLSYLDSKGNVQPPQINAYHAASAVPAMRIVSDGPQSGEKRFDLQGANQLLQTFTLSHSS LPKIDFWLFENYVNAVPGDNFRVQIVQLNAHDIPEKTLFSAALPPFNLPAKPAIYSLWPR LKGLDKHKRYGLLLSSQDSTVSDAAGTNSYGTLSSDSAHYAGGKLRRSSDGGKSWQDAPS QTLLFTLYSNER >gi|283548478|gb|GG730299.1| GENE 50 55819 - 57237 1640 472 aa, chain - ## HITS:1 COG:no KEGG:YE2976 NR:ns ## KEGG: YE2976 # Name: ybfM # Def: hypothetical protein # Organism: Y.enterocolitica # Pathway: not_defined # 17 472 25 467 467 525 60.0 1e-147 MSKNNNLPLFALISAALAAPLFSFPAQATGFWDDSHLTGGIYYSQRYRNKRDMTPGSATY GDYVEDLHHATFNANLDFISGYAADFVGFDVAGFAAANLATGNAAHPNEISLSSANQRWG EKWAGDDGGFNLYKAAMKFKYNDYWMRSGYIQPSGQTLLAVHWGFVPGAYQGSEVGGNWD FGKYGALSSSYLWSDKYKAPWYTEMYEFRAADNKTKIDYVQALGMKYDFKNNLLLEASWA QAEGFMNQYMGKVSYSFPVAGNMLRTSYQFYGAKDMVGDGSLGAYGSINDEYSGLAWLQG VTLGYTVDTLDFRLEAQTVKAEGNQGFFLQRITPAYASSNGRLDIWWDAASDFDANGETS AFAAVTYDLKNYDLPGWAVGVGYAYGWNAKPCTTCTVNGTLVDQSQRIDESAWTLNIAHT VQSGRLKGTLFNLHYIAYDNHGSNPNYSNGYNNMFQDEIDIKFNVIAPFTIF >gi|283548478|gb|GG730299.1| GENE 51 57317 - 59512 1862 731 aa, chain - ## HITS:1 COG:BH2223 KEGG:ns NR:ns ## COG: BH2223 COG3345 # Protein_GI_number: 15614786 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidase # Organism: Bacillus halodurans # 2 731 3 743 748 708 47.0 0 MIFWNEKTQTFHLQNDSISYVMAIAHDRYLTHCYWGKRLNTWSTGYDYPPLDRSSFSPTP AGWPDRTFSLDTAPQEYPGHGAGDYRESAFEVRYADGHQVSNLHYVSHRIIAGKPGLCGL PATWVAGDNDAETLLITLTDPVTHLDVELSYTLFRQHAVIARSARFTNRAEQPMRLLRAL SCGVDLPDDRWQQIQFPGAWARERQWHRQPLNPGINVLDSKRGASSTHQQPFIGLVRPET TEMQGEACGIHLVYSGNFSARTEVDAYRQTRLLLGINPHGFGWQLMPGEQFQTPEAILAW SDSGLNGLSQTLHALYRDNLARGPHRHQPRPILANNWESTYFDFNEEKLLKFAANAKALG VELLMLDDGWFGERNGDTSSLGDWFVNTQKFPQGLRPLIDRVHAMEMKFGLWFEPEMISR RSELFRQHPDWVLNAGDQPLSEGRNQYILDLGREEVRDNILAQMSAFLDTHPIDYIKWDM NRNMTEVGSSTAQPECQQETAHRYIQGLYALLDALTARFPHILFECCAGGGGRFDPGMLY YMPQAWVSDNTDAASRVHIQYSTSLLYPPVMQCAHVSEVPNHQMGRSTTMDMRGAVAMSG NYGLMLDLMHSDGERDAAVAQQIACYKQHRQLLQFGTFWRLVSPWENADFAAWMFVAPDH SEALVMAFSLVSQASAPLRLLRLAGLDESASYRIDEGDNPVGGDELLNRGIWIDPPLSRD YTSRIWHLRRI >gi|283548478|gb|GG730299.1| GENE 52 59509 - 60897 877 462 aa, chain - ## HITS:1 COG:BS_ydjD KEGG:ns NR:ns ## COG: BS_ydjD COG2211 # Protein_GI_number: 16077683 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Bacillus subtilis # 11 456 9 463 463 206 33.0 7e-53 MELTSSSAEAAVEKKHYPRDKVSWTTAISYGMGSYGANVMYAFIAIYLMLYYTDSFGIKA AAVGLLFLVARLVDGATDIALGILVDNTHTKMGKFRPWILIGSILVSLTTVACFLSPDLS EAGKLVYAYATYILWSVCFAVIDIPYWSLSAAITQDPTERTKVITIPRTIATFGFLTVSA STLWLVKFVGSWWGVSLVFSAIFLICMLITFFGVKEKYAVPRKERQSFKGFWTLLKQNRP LRYLLIGMFMLELIGIIRGTFQLYFFIYNLNAEIALAAFLTVSQIAQVAGAIASPFISAK IGKKNTAIYSSFLMSLSCMGLFFFQNNISLIFIIGTLAPFFGGVGQIALYSMVADCVEYG EWISGNRSEGMVFSLNIFKTKLSGAIGGAIGGFCLSWAGYVPHAVQTDQAALWIGLFFTL IPGILTILSLLPLAKYEITEKRFFEILDDIHHRNKKPQGVTP >gi|283548478|gb|GG730299.1| GENE 53 61066 - 62262 972 398 aa, chain - ## HITS:1 COG:ECs3416 KEGG:ns NR:ns ## COG: ECs3416 COG1940 # Protein_GI_number: 15832670 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli O157:H7 # 4 395 5 396 399 510 61.0 1e-144 MQIAGLNNQTVRQHNRRAIMALIWRYKRLSKSQLATHTGLSIPAISKILDELVGERKLSH SSENLSSRGMNSGHYQIPNDGPLILCMNVTPTSIESQLIDAQMTPVGDFLHTQVNAPTPE ALLTAIEDLWRQQQKHCPGRHINLALGVHGQVDPDTGVSQTMPQAPWKKPVEIKYLLEER LRVSVRVDNDCIMLALAEKWQNGSNRQDFCIVNVDYGIGSSFVINGQIYRGMLNGSGQIG HTIFDRDGIACDCGRYGCLETVASLSALKKQARVWLKSRPTPPGLDPQTITSRQLIDAWH SGDEQVVQWVEQAANAIGLTLYNLLNILNINQIWFYGRSCEFGDRWLQTIYRQIGFTPFD QGDAVRTRQTQIGFGNLTRQQQITGIGYLFVEAALARA >gi|283548478|gb|GG730299.1| GENE 54 62378 - 65644 3084 1088 aa, chain + ## HITS:1 COG:no KEGG:CKO_00239 NR:ns ## KEGG: CKO_00239 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 1087 1 1087 1088 1643 73.0 0 MYGVVKVWQETLTLPTWTTGNEDVNPMFLEKRVYQGSSGAVYPYGVIDTLTGEREMREYQ GIWMENDFVRILLLPELGGRIHRAYDKVKQRDFVYYNDVVKPALVGLLGPWISGGIEFNW PQHHRPTTFMPVDFTITPGEHGEQTVWMGEVEPMRGLQLMAGFTLYPDRALVEITGKVFN GNATPRHFLWWSNPAVKGGDDHQSVFPPDVTAVFDHGKRDVSSFPIATGTYYKVDYSAGV DISRYKNVPVPTSYMAEKSEYDFVGAWHYGERGGLLHVADHHVSPGKKQWSWGYGEFGQA WDRQLTDENGPYIELMTGVYTDNQPDFTWLAPYEEKVFVQNFLPYSELSSVQNASTRLVM RLERQASQLALGLYAVAPLRDVRVEIRDGEQTLWRTQVTLEPGESWQETLAESWPQRLTM IVLASDGAPLLQYEEHIPEATPLPNAASVPAQPQDLHNAEELYFIGQHIEQYNHASRYAE DYYRRAIELDPEDYRSNVALGNLALNRADWSMAQRCAEAALARAHRLNKNPRDGEASLLL GAVFERQGEASKAWDSYYKASWSGNCRDAAFYSLARLAMARGDDADALAKVELSLQFNGG NNLAMGLKALALATTQGERAALAYIDQALKTHPLGYALHYARWVISGDAASGDALRQVTG QRGINASMLAGWLISLGKKQAARELLALLDCQETLPLLWQASLSDNPQPYLQNAQRNFAN RVRFPNTLDEVVMLQSLQQDAFACYLLGCFWYSKRRYDEAIACWQQTLAQQPDFAPVHRL LGIYAWNKQHNAQLASRYLQQAVALEPNNARFLFELDYLNKQQGQSREARLALLTPRREV VLKRDDLTAELLSLWNGVGEYAQAAQVLRERDFHPWEGGEGKVTGQYLLNQIHRALAAMS QGECGQAIELLQQALHYPLNLGEGRLPGQTDNDIWYLLAHCHQQRSEEALAAQALARALQ GDCGLSAGRYYNDQPADYLFWQGMAMRANGLGSQADAHFHRFLDWVEQQRDCVPETDFFA VSLPDLVALDASPALRHQQHCLFIEALGHLGLGNRQDCQRALTMLLTLNPAHDKALLMNH ALTVGLFD >gi|283548478|gb|GG730299.1| GENE 55 65693 - 66517 595 274 aa, chain + ## HITS:1 COG:yphB KEGG:ns NR:ns ## COG: yphB COG2017 # Protein_GI_number: 16130469 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Escherichia coli K12 # 44 274 48 288 290 129 33.0 4e-30 MTQIRLQTAELEATIDPQGGKVLRLISRPLGLSVLHENPAGGLFPMLPVANRVAGNRFML RGEEVVLPQHGADDTFFLHGDGWLRRWQVITVTQSGCLLQLRGWHPCGYDYSAQLCYQLE TSNLHASLTLTHCGAQPMIYGCGFHPFFAFDKHSTAQFTASGYWPEGEQHLPLDWRSDIP PAADFARAQYGEDAWLNVGYSGWGGRAVIQRDVMKVTILAQTPWLMLFRMSGEPFLCLEP QTHPVNAHHMQGQPGLQVLAQGERCHFAMQICVE >gi|283548478|gb|GG730299.1| GENE 56 66607 - 67755 1457 382 aa, chain + ## HITS:1 COG:STM2554 KEGG:ns NR:ns ## COG: STM2554 COG0477 # Protein_GI_number: 16765874 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 377 1 377 379 592 90.0 1e-169 MALHSTRWLALGYFTYFFSYGIFLPFWSVWLEGLGLTPETIGVLLGAGLIARFLGSLLIA PRVSDPSRLISALRILALLTLVFALAFWAGTNVAWLMVVMVGFNLFFSPLVPLTDALANT WQKQITMDYGRVRLWGSVAFVIGSALTGKLVSLFDYRMILVLLSLGAASMLLGMMIRPSV QPAGENRQQESAGWPAWRALITQSWRFLACVSLLQGAHAAYYGFSAIYWQSAGYSASAVG YLWSLGVVAEVIIFALSHKLFRRFSARDLLLLSAVCGVARWGLMGWSTELPWLIVVQILH CGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGYLYQNLGSGVFWV MALVALPAIVLRPKVVAQPAPL >gi|283548478|gb|GG730299.1| GENE 57 67750 - 69027 1050 425 aa, chain - ## HITS:1 COG:STM2553 KEGG:ns NR:ns ## COG: STM2553 COG3711 # Protein_GI_number: 16765873 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Salmonella typhimurium LT2 # 1 425 1 425 425 676 80.0 0 MMSTLAPPSVLSAPQRRCQVLLTLFLPGQIATAQTFSSLNGVDDATVQEDIIGAGLEIQR YHRLAITTAQNGGYAIEGAPLNQRLCLLHWLRRGLRICPTFIAQHFTPTLKMALKQQGIA RTLYDDTNLHALINLCSRRLQKPFECRDIQFLRLFLQYCLLQHHAGITPEFNPLQQRWAQ SCAEYALAEEIARHWQRHVMQSAPPSESLFMALLFSMIRIPDPIRDNHQQDRRLRLAIAR LVLRFREYGNVRFSDEQGLNDQLYIHLAQALNRSVFAIGIDNTLPEEFSRLYPRLVRTTR EALHGFEAEYDVQFSDEEIGLVAVIFGAWLMQEKDLHEKQIILLTGSNEQLEAHIEQQLR ELTLLPLNVKHMPMQDFQKEGAPRGVTLIITPYTTPLPLFSPPLIHADLALTSHQQQQIR KILES >gi|283548478|gb|GG730299.1| GENE 58 69448 - 70047 611 199 aa, chain - ## HITS:1 COG:YPO3638 KEGG:ns NR:ns ## COG: YPO3638 COG0794 # Protein_GI_number: 16123780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Yersinia pestis # 5 199 7 201 201 251 66.0 4e-67 MSDSWSQATGVFQIYSDALAGLGQHLTEPVWQSLMAELRGCQGKIVVTGVGTSGIAARKV AHMLACVERPAIYLNATDAAHGDLGFLRADDLVIMLSRGGNSDELTRLLPGLAARNVPLL SVTENADSAIAKASRLVISTGVQREADPLNMLATTSILLVLAIFDAACACLMSESGYSKE TLLAVHPGGDVGLTLSRGQ >gi|283548478|gb|GG730299.1| GENE 59 70044 - 71681 2027 545 aa, chain - ## HITS:1 COG:YPO3637 KEGG:ns NR:ns ## COG: YPO3637 COG1069 # Protein_GI_number: 16123779 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Yersinia pestis # 1 545 1 545 545 969 83.0 0 MASYFIGVDVGTGSARAGVFDLNGRMVGQASRAIEIYRPQADFVEQSSDNIWQAVCNAVR DAINQSDINPIQVKGLGFDATCSLVVLDKEGNPLTISPSGRSEQNIIVWMDHRAITQADR INALHHRVLDYVGGIISPEMQTPKLLWLKQHMPNTWANAGYYFDLPDFLTWRATGDDTRS LCSTVCKWTYMGHEDKWDASYFRQIGLEDLLEHDAAKIGRYVKTMGEPLGHGLSARAASE MGLIPGTAVSVSIIDAHAGTLGTLGASGVSGEVPDFDRRIALIGGTSTGHMAISKAPRFI GGVWGPYYSAVLPEYWLNEGGQSATGALIDHVIQSHPCYETLLAQAKSQGQTIYEVLNAL LRKMAGEPEDIAFLTRDMHILPYFHGNRSPRANPTLTGAITGLKLSRTPEDMALQYLATI QAIALGTRHIIETMNQSGYTIDTIMASGGGTKNPIFVQEHANATGCAMLLPEESEAMLLG GAMMGTIAAGVFDSFPEAMSAMSRIGKTVTPQTNRIKQYYDRKYRVFHEMYQDHMKYRQL MQEEA >gi|283548478|gb|GG730299.1| GENE 60 71698 - 72651 1341 317 aa, chain - ## HITS:1 COG:YPO3636 KEGG:ns NR:ns ## COG: YPO3636 COG1172 # Protein_GI_number: 16123778 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Yersinia pestis # 1 317 1 317 317 361 81.0 1e-99 MKTIARFLPGDAIIRLQCVIIVVVALVFSALLGSRFFSVANFQSIGSQLPILGMLALGMG MTMLTGGINLSIIAGANACSLVMAAIIVAHPDNPLFLALALLAGAAVAVAIGTLNGALIA WVGVSPILATLGTMTLISGLNILLSNGTVISGFPTAIQYLGNATIAGIPVALLLFLLVAI LLWVLLEHTTLGRSLYLVGSNEQATRYSGVNTVRVQISVYVISALLGWVAAILMMAKFNS AKAGYGESYLLVTILASVLGGINPDGGFGRIIGLVLALIVLQMLESGLNLLGVSSYLTMA LWGAVLILFIALQNRKA >gi|283548478|gb|GG730299.1| GENE 61 72653 - 73642 1348 329 aa, chain - ## HITS:1 COG:YPO3635 KEGG:ns NR:ns ## COG: YPO3635 COG1172 # Protein_GI_number: 16123777 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Yersinia pestis # 1 328 1 328 329 439 82.0 1e-123 MNNLRLSRLIGQHEFWLGLLVVALAVGLSVSTDEFLSLGNLTDVATSYAILGILACGLFV VLISGGIDISFPAMTAIAQYAMASWVIAHGGNFALALAIAMAVGLLLGLINGFLVYRLRV PAIIITIATLNVYYGLLVYATKGTWLYGFPDWFMNGINWLSFTAADGYDYGLTLPLLCLA AVIIFTAVLMNYTRLGRQVYAMGGNRDAASRLGLNLLKLHFYVYGYMGILAGVAAVVQAQ ITQSVAPNSLLGFELTVLAAVVLGGTSMSGGRGTLTGTLLGVVLLAFLQNGLTLLSVSSY WHTVFSGAIILVSISATAWNEKRKLAREL >gi|283548478|gb|GG730299.1| GENE 62 73635 - 75143 1739 502 aa, chain - ## HITS:1 COG:YPO3634 KEGG:ns NR:ns ## COG: YPO3634 COG1129 # Protein_GI_number: 16123776 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Yersinia pestis # 1 497 1 496 498 818 81.0 0 MTDTTAFITLENISKQFPGVLALDKVNLTLKKGEVHCLAGQNGCGKSTIIKVISGVYQPE KGAQILLDGKLFHHLTPQLSSHYGIQVIYQDLSLFPNFSVAENIAVNRYLPGGDIWVRRG AMKQQALAAMKRIGVNIDPDKKVEKLSIADRQLVAICRAIAADARLVIMDEPTASLTRQE VNGLLRVVNELKAAGICVVFVSHRLDEVMEVADRISVMRDGKLVGTYPASELDSHELAFL MTGQRFHYSPLPERPAVEQEPLLELRNLSRRGKYQNINLSLHGGEIVSIVGLLGAGRTEL CLSLFGMTHPESGEIRINGQPVTLRNNHDAIKHGIGYVSEDRLTQGLIMEQSIYDNTIVT VFDRLHTGSGLLDHRKAQKLVADLIRELNIKVSDPHLPVKTLSGGNAQRIAIAKWVATNP RILILDSPTVGVDIANKEGIYQIARSLAEQGMAVLMICDEIPEAYYNSHRVLVMRRGRLV AEFNPHHCREEEIAEVVEVINE >gi|283548478|gb|GG730299.1| GENE 63 75248 - 76231 1385 327 aa, chain - ## HITS:1 COG:YPO3633 KEGG:ns NR:ns ## COG: YPO3633 COG1879 # Protein_GI_number: 16123775 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Yersinia pestis # 1 327 24 352 352 537 85.0 1e-153 MKFKLALLSATLVSACMLSGTSFAAEKYEIAVVAKVTGIPWFNRMETGVNEAAKKLDVNA YQTGPSTPDPAQQVKVIEDLIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPDE HIGQWDIETIDSEKYAQANVDELAKNMGGKGGYAIYVGSLTVPLHNAWADYAIKYQKEKY PEMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVQKKRAKDKI AVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVNADLSIDGLGKA DIDTEKKVIRFNKILEVTKDNAQSLGF >gi|283548478|gb|GG730299.1| GENE 64 76645 - 77283 519 212 aa, chain + ## HITS:1 COG:STM2552 KEGG:ns NR:ns ## COG: STM2552 COG3683 # Protein_GI_number: 16765872 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 212 1 212 212 342 78.0 3e-94 MQRVQRIIVTLFLAVLSFSAGAHPHSFIHLKTEIVSENNQFVALKMRWTMDEITSADLLY DAGNAKPGSEIWKKLAAEVMANVLGQHYFTEVWHDGQKVKFKNRPTEYGMEREEHQAVLT FVLPLAEPQPLNGQKYTISTFDPTYYVDMSYDQDSDARLSQAIGQQCRISVHTPTPNEQT LSFAQSLDKEDAPPEDMELGKQFAQTVTLQCQ >gi|283548478|gb|GG730299.1| GENE 65 77274 - 78254 814 326 aa, chain + ## HITS:1 COG:STM2551 KEGG:ns NR:ns ## COG: STM2551 COG2215 # Protein_GI_number: 16765871 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 326 1 326 328 430 77.0 1e-120 MSVVYQPRPAGRRWLTLWPLALFLLLAAGGILWLWQAWPQVMMKSIVWQREVNQQMSGLL KAVAARPTQAGGSLLLFSFLYGVLHALGPGHGKIVITTWLATHPSKLKSSIGLTLASSLL QGLVAIGLVVVVLTILQLPARQLHMSSFWLEKGSYALVGVLGVLLCVRALKKLRLLLRRP TFTAFTPHHVHHDGCGCGYQHLPNPEQVQSGDDWRARLMIVLSMGMRPCSGAIMVLLFSK VIGVFSWGMASALAMAAGTSLTITSLALLVHSFRSLAVRLSGHKAPVLWRQIGWTTLALA GGALLIAAAVVMWMSAVPVGRGIRPF >gi|283548478|gb|GG730299.1| GENE 66 78364 - 79167 937 267 aa, chain - ## HITS:1 COG:STM2546 KEGG:ns NR:ns ## COG: STM2546 COG0483 # Protein_GI_number: 16765866 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Salmonella typhimurium LT2 # 1 267 1 267 267 493 90.0 1e-139 MHPMLTIAVRAARKAGNVIAKHYETPDSVETSQKGSNDFVTNVDKAAEAIIIETIRKSYP QHTIITEESGEHAGEDQDVQWVIDPLDGTTNFVKRLPHFAVSIAVRIKGRTEVAVVYDPM RNELFTATRGQGAQLNGYRLRGSTARDLDGTIIATGFPFKAKQHAASYMKILGNMFTECA DFRRTGSAALDLAYVAAARVDGYFEIGLRPWDFAAGELIAREAGALVCDFTGGHNYMATG NIVAGNPRVVKAMLANMRDELSDALKR >gi|283548478|gb|GG730299.1| GENE 67 79286 - 80017 809 243 aa, chain + ## HITS:1 COG:STM2545 KEGG:ns NR:ns ## COG: STM2545 COG0565 # Protein_GI_number: 16765865 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Salmonella typhimurium LT2 # 1 243 1 243 243 450 93.0 1e-126 MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGSA QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATNSPVALVFGRERVGL TNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPLV DDLERFYGHLEQTLLSTGFIREGHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQN KSK >gi|283548478|gb|GG730299.1| GENE 68 80259 - 80750 395 163 aa, chain + ## HITS:1 COG:STM2544 KEGG:ns NR:ns ## COG: STM2544 COG1959 # Protein_GI_number: 16765864 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 163 1 164 164 270 97.0 1e-72 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGDKCLTHALWRDLSDRLTGF LNNITLGELVNNQEVLDVSGRQHTHDAPRTNRAQDAIDVKLRA >gi|283548478|gb|GG730299.1| GENE 69 80668 - 80883 91 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCLVASTRMTLHALIVLKTRSTLSYAHNLPVIFRAATALAALARPSHLLDVSSWALSSLP PCCNTNYLGQR >gi|283548478|gb|GG730299.1| GENE 70 80993 - 82207 1688 404 aa, chain + ## HITS:1 COG:STM2543 KEGG:ns NR:ns ## COG: STM2543 COG1104 # Protein_GI_number: 16765863 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 404 1 404 404 797 96.0 0 MKLPIYLDYSATTPVDPRVAEKMMQCLTLDGNFGNPASRSHRFGWHAEEAVDIARNQIAE LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVD ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRIRIEAQMHGGGHERGMR SGTLPVHQIVGMGEAYRIAKEEMETEMARLRSLRNRLWNGVKDMEEVYLNGDLEQGAPNI LNVSFNFVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGMTDELAHSSIRFSLGRF TTEEEIDYAINLVRNSIGRLRDLSPLWEMFKQGVDLNSIEWSHH >gi|283548478|gb|GG730299.1| GENE 71 82234 - 82620 546 128 aa, chain + ## HITS:1 COG:STM2542 KEGG:ns NR:ns ## COG: STM2542 COG0822 # Protein_GI_number: 16765862 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Salmonella typhimurium LT2 # 1 128 1 128 128 233 97.0 6e-62 MAYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNEGIIEDARFKT YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPVKIHCSILAEDAIKAAIAD YKSKREAK >gi|283548478|gb|GG730299.1| GENE 72 82641 - 82964 468 107 aa, chain + ## HITS:1 COG:STM2541 KEGG:ns NR:ns ## COG: STM2541 COG0316 # Protein_GI_number: 16765861 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 107 1 107 107 201 98.0 4e-52 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAAEDTVFEDKGV KVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV >gi|283548478|gb|GG730299.1| GENE 73 83039 - 83554 473 171 aa, chain + ## HITS:1 COG:ECs3393 KEGG:ns NR:ns ## COG: ECs3393 COG1076 # Protein_GI_number: 15832647 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Escherichia coli O157:H7 # 1 171 1 171 171 257 91.0 8e-69 MDYFTLFGLPAQYPIDLQALTIRFQDLQRQYHPDKFASGSQAEQLAAVSQSATINQAWQT LRHPLMRAEYLLSLHGFDIRSEQHTVRDTAFLMEQLELREELDEIEQAKDESRLESFIQR VKKMFESRHQLMVEQLDSETWDVAADTVRKLRFLDKLRSSAEQLEEKLLDF >gi|283548478|gb|GG730299.1| GENE 74 83570 - 85420 2428 616 aa, chain + ## HITS:1 COG:STM2539 KEGG:ns NR:ns ## COG: STM2539 COG0443 # Protein_GI_number: 16765859 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Salmonella typhimurium LT2 # 1 616 1 616 616 1054 94.0 0 MALLQISEPGLSAAPHQRRLAVGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQ QQDCSVGYDARSNAALDTANTVSSVKRMMGRSLADIQARYPHLPYTFQASENGLPMIETA AGLLNPVRVSADILKALAARATESLSGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVL RLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDD FDHLLADYIREQAGVADRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEITRETF NELISALVKRTLLACRRALKDAGVEPQDVLEVVMVGGSTRVPLVRERVGEFFGRTPLTSI DPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARA QDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGL LSVTAMEKSTGVESSIQVKPSYGLTDGEIASMIQDSMSFAEQDVKARMLAEQKVEAARVL ESLSGALNADAALLSAAERQAIDIAAAHLSVVAQGDDVDAIEQAIKNVDKQTQEFAARRM DKSVRSALKGHSVDEV >gi|283548478|gb|GG730299.1| GENE 75 85422 - 85757 327 111 aa, chain + ## HITS:1 COG:STM2538 KEGG:ns NR:ns ## COG: STM2538 COG0633 # Protein_GI_number: 16765858 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Salmonella typhimurium LT2 # 1 111 1 111 111 201 97.0 3e-52 MPKIVILPHQDLCPDGAVLEAETGETILDVALRNGIEIEHACEKSCACTTCHCIVREGFD SLPESTEEEDDMLDKAWGLEPESRLSCQARVTEDDLVVEIPRYTINHAREH >gi|283548478|gb|GG730299.1| GENE 76 85769 - 85969 321 66 aa, chain + ## HITS:1 COG:ECs3390 KEGG:ns NR:ns ## COG: ECs3390 COG2975 # Protein_GI_number: 15832644 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 66 1 66 66 112 95.0 2e-25 MGLKWTDSREIGEALYDAFPDLDPKTVRFTDLHQWICDLEEFDDDPQASNEKILEAILLV WLDEAE >gi|283548478|gb|GG730299.1| GENE 77 86149 - 87432 1809 427 aa, chain + ## HITS:1 COG:STM2536 KEGG:ns NR:ns ## COG: STM2536 COG0260 # Protein_GI_number: 16765856 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Salmonella typhimurium LT2 # 1 427 1 427 427 809 93.0 0 MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGKDDLGLIQRAARKIDGLGIKHVQ LDGEGWDTERSWAFWQGYKGPKGSRKVEWAALDEAQRKELDNRLKIIDWVRDTINAPAEE LGPEQLAQRAVDLLCSVACDNVSYRITKGEDLREQNYMGLHTVGRGSERPPVLLALDYNP TGDKEAPVYACLVGKGITFDSGGYSIKQSAFMDSMKSDMGGAATVTGALAFAITRGLNKR VKLYLCCADNLISGNAFKLGDIIRYRNGKNVEVMNTDAEGRLVLADGLIDASAQKPELII DAATLTGAAKTALGNDYHALFSFDDKLAARLLASAAQENEPFWRLPLAEFHRSQLPSNFA ELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRT IANLLIA >gi|283548478|gb|GG730299.1| GENE 78 87542 - 88318 945 258 aa, chain + ## HITS:1 COG:no KEGG:CKO_00260 NR:ns ## KEGG: CKO_00260 # Name: not_defined # Def: enhanced serine sensitivity protein SseB # Organism: C.koseri # Pathway: not_defined # 1 258 1 258 258 468 95.0 1e-131 MSETKNELETLLEQAATEPAHRPAFFRTLLESTVWVPGTAAEGEAVVEDSALDLQHWEKE DGTTVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETLFLNAKLPTGKEFMPREIS LLIGDEGSPLSTQEVLEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVKRAFLCSIKESA EAQPNLLIGIEADGDIEEIIHAAGSVATDTLPGDEPIDICQVKKGEKGVSHFITEHIAPF YERRWGGFLRDFKQNRII >gi|283548478|gb|GG730299.1| GENE 79 88417 - 89262 841 281 aa, chain - ## HITS:1 COG:sseA KEGG:ns NR:ns ## COG: sseA COG2897 # Protein_GI_number: 16130446 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 280 54 333 334 492 85.0 1e-139 MTTAFFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVGEEYRAGHIPGAVFFDIEALSD HTSLLPHMMPRPEAFAVAMRELGVHQDQHLVVYDDGNLFSAPRAWWMLRTFGVENVSILA GGLAGWRRDELMLQEGNEELPEGEFNVAFTPEAVVRVTDVLLASHEKTAQIVDARPAARF NAEVDEPRPGLKRGHVPGALNVPWTELVRDGELKTTDELDAIFFSHGVSFDRPIIASCGS GVTAAVVVLALATLDVSNVALYDGAWSEWGARNDLPVEPVL >gi|283548478|gb|GG730299.1| GENE 80 89469 - 94400 5171 1643 aa, chain + ## HITS:1 COG:ECs3386 KEGG:ns NR:ns ## COG: ECs3386 COG2373 # Protein_GI_number: 15832640 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Escherichia coli O157:H7 # 1 1643 1 1653 1653 2786 84.0 0 MKHLRVAACMLMLALVGCDNNEKSTTVAKPDAPAPQTAPAKDKAQLAKLMQQSQGKSLTL LDASEVQLDGAATLVLTFSIPLDPEQDFSRVVHVVDKKSGKVDGAWELAPNLKELRLRHL EPNRELVVTIERGLLALNKATFGIDYEKNITTRDVQPSVGFASRGSLLPGKVIEGLPVMA LNVNSVDVNFFRVKPESLGAFVSQWEYRNSLSNWESDNLLKMAELVYTGRFDLNPARNTR EKLLLPLSDIKPLQQAGVYIAVMNQAGKYNYSNAATLFTLSDIGVSAHRYHNQLDVFTQS LENGAAQQGIEVTLLNEKGQTLAQATSDAQGHVKLENDKDAALLLARKDGQTTLLDLKLP ALDLAEFDIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDSDGKTLPDQPVKLEVVKP DGQVLRTVVSQPENGLYRFSWPLDSSAPTGMWHIRANTGDNQTRMWDFHVEDFMPERMAL NLTANKTPLAPADEVKFSVVGYYLYGAPANGNALQGQLFLRPLREAVQTLPGFQFGNIAE ENLSRSLDEVQLTLDDHGRGEVTANSQWQETHSPLQVILQASLLESGGRPVTRRVEQAIW PADTLPGIRPQFAAKAVYDYRTDTTVNQPIVDEDSNAAFDIVYADAQGDKKAVSGLQVRL IRERRDYYWNWSEGEGWQSQFDQKDLVEGEQTLDLKADETGKVSFPVEWGAYRLEVKAPN DAVSSVRFWAGYSWQDNSDGSGAVRPDRVTLKLDKPGYRPGDTMKLHIAAPAAGKGYAMV ESSEGPLWWQEIDVPADGLDLSIPVDKTWNRHDLYLSALVVRPGDKSRSATPKRAVGLLH LPLGDENRRLALTLESPAKMRPNQPLTVKIKASVKNGDVPKQVNVLVSAVDSGVLNITDY ATPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVA QQALPVTLNEQGEGTVTLPIGDFNGELRVMAQAWTADDFGSSESKVIVAAPVIAELNMPR FLAGGDTSRLTLDVTNLTDKPQTLNINLAASGLLELMGQDPAPVNLAPGVRTTLFIPVRA REGFGDGEIQAQISGLTLPGETLPVQHKQWKIGVRPAFPAQTVNNGVALQPGATWQLPGE ELTNFSPATVQGQLLFSGKPPLNLARYIRELKAYPYGCLEQTASGLFPSLYTNAAQLKAL GIAGDSDEKRRAAVEIGISRLLQMQRDNGGFALWDKNGPEEYWLTAYVMDFLVRANEQGY SVPTEVINRGNERLLRYLQDPGMMSIRYTDDTSASRFAVQAYAALVLARQQKAPLGALRE IWERRAQAASGLPLLQLGIALKNMGDANRSEQALTLALNTPRRDAQQWMADYGSPLRDNA LMLALLEENKLKPDVQNTLLNTLSEQAFGQRWLSTQENNALFLAARTLQDLPGTWQAQTS LSEQPLAGEKSQTRNLDVDALSTLTVTNSGNQPLWLRLDVSGYPQTSPTPASNVLHIERQ ILGLDGHSKSLDSLRSGELVLVWLEVKASQNVPDALVVDLLPAGLELENQNLANGSASLQ DSGSEVANLLNQMQQADIQHVEFRDDRFVAAVAVNEGQPVTLVYLARAVTPGTYQVPVPQ VESMYVPQWRATGATEGLLIVRP >gi|283548478|gb|GG730299.1| GENE 81 94404 - 96713 1911 769 aa, chain + ## HITS:1 COG:pbpC KEGG:ns NR:ns ## COG: pbpC COG4953 # Protein_GI_number: 16130444 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein PbpC # Organism: Escherichia coli K12 # 2 769 3 770 770 1307 86.0 0 MRGLGKRGCWLWLAAVALVFVAAVWAADKIWPLPLHEVDPARVVVAHDGTPLWRFADADG IWRYPVTIDEVSPRYLEALINYEDRWFWKHPGVNPFSVLRAAWQDLSSGRVVSGGSTLTM QVARLLDPHPRTFGGKFRQLWRALQLEWHLSKRDILTLYLNRAPFGGTLQGVGAASWVYL GKSPAQLSYSDAALLAVLPQAPSRLRPDRWPARAEAARNKVLERMAAQGIWPASQVQESR EEPVWLAPRQMPQLAPLFSRMMLGKSRRDKIVTTLDAGLQRQLEELAQNWKGRLPARSSL AMIVVDHTDMSVRGWVGSVDMNDDSRFGHVDMVNAIRSPGSVLKPFIYGLALDDGLIHPA SLLQDVPRRTGDYRPGNFDSGFHGPVSMSEALVRSLNLPAVQVLEAYGPKRFAASLRNVG LPLYLPAGAAPNLSLILGGAGARLEDMAAAYSAFARHGKAGKLRLQPDDPLQERPLMSAG AAWIIRRIMADEAQPLPDNALSRVVPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDG TPVVGQFGFASAVPLLNQVNNLLLSRGTNQPEDPRPDSVSRGVVCWPGGQSLAPGDANCR RRLATWLLDGSQPPTLLLPEQEGVNGIRFPVWLDDEGKRVAADCPQAREQTLIVWPLPLE PWLPESERRGARLPPVSATCPPLGQDASLPLQLTGLRDGAIVKRLPGSPEASLPVQTSGG TGDRWWFLNGERLDERGRRLTLRLAAKGDYQLLVMDDAGQVATVRFSLQ >gi|283548478|gb|GG730299.1| GENE 82 96862 - 97293 418 143 aa, chain + ## HITS:1 COG:ECs3380 KEGG:ns NR:ns ## COG: ECs3380 COG0105 # Protein_GI_number: 15832634 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Escherichia coli O157:H7 # 1 143 1 143 143 270 97.0 5e-73 MAIERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFF DGLVEFMTSGPIVVSVLESENAVQRHRDLMGATNPANALAGTLRADYADSFTENGTHGSD SVESAAREIAYFFGEGEVCPRTR >gi|283548478|gb|GG730299.1| GENE 83 97544 - 98710 1422 388 aa, chain + ## HITS:1 COG:STM2525 KEGG:ns NR:ns ## COG: STM2525 COG0820 # Protein_GI_number: 16765845 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Salmonella typhimurium LT2 # 1 388 1 388 388 749 93.0 0 MSELVNTSEVVIPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDN FDDMTDINKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRAT LCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRPITNVVMM GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAACG QLAGDVIDRTKRTLRKRMQGESIDIKTV >gi|283548478|gb|GG730299.1| GENE 84 98993 - 99994 766 333 aa, chain + ## HITS:1 COG:STM2524 KEGG:ns NR:ns ## COG: STM2524 COG1426 # Protein_GI_number: 16765844 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 333 1 334 334 469 83.0 1e-132 MNTEATHDKNEALSTGVRLRNAREQLGFSQQAVAERLCLKVSTVRDIEEDKAPADLASTF LRGYIRSYARLVHIPEEELLPGLEKQAPIRPAKVAPMQSFSLGKRRKKRDGWLMTLTWLV LFVVVGLTGAWWWQNHKAQQEEITTMADQSSAELNAGKDGAQNVPLDTSAAASQDTTPAP DDGAVANAAPATDAPATPAPAADAQQNAVVAPSQANVDTATAAPAASANAAPLPTDQAGV TTTPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGSLNLTGQAPYKLKIGAPAAV QIQFQGKPVDLSRFIRTNQVARLTVNAEQSPAQ >gi|283548478|gb|GG730299.1| GENE 85 100021 - 101139 1278 372 aa, chain + ## HITS:1 COG:ECs3377 KEGG:ns NR:ns ## COG: ECs3377 COG0821 # Protein_GI_number: 15832631 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Escherichia coli O157:H7 # 1 372 1 372 372 703 98.0 0 MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVR VSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRM VVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSV KASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRVSL AADPVEEIKVGFDILKSLRIRARGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDV SIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGVRKDRLDNDDMITQLEARIRAKASMLD EARRIDVQQLEK >gi|283548478|gb|GG730299.1| GENE 86 101250 - 102524 1359 424 aa, chain + ## HITS:1 COG:ECs3376 KEGG:ns NR:ns ## COG: ECs3376 COG0124 # Protein_GI_number: 15832630 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 424 1 424 424 831 95.0 0 MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVT DVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG RYRQFHQLGVEVFGLQGPDIDAELIMLTARWWRALGISQHVSLELNSIGSLEARASYRDA LVAYLEQHKDKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPQLGDYLDDDSREHFAGL CKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGGRAT PAVGFAMGLERLVLLVQAVNPEFIASPVVDIYLVASGTDTQSAAMRLAERLRDEVPGVKL MTNHGGGNFKKQFARADKWGARVALVLGESEVANGTVVVKDLRSGEQTAVAQDSVAAHLR TLLG >gi|283548478|gb|GG730299.1| GENE 87 102538 - 103158 727 206 aa, chain + ## HITS:1 COG:yfgM KEGG:ns NR:ns ## COG: yfgM COG2976 # Protein_GI_number: 16130438 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 206 1 206 206 321 91.0 5e-88 MEIYDNENDQIDAVKRFFAENGKALAVGVILGVGALVGWRYWTSHQTESARSASLAYQNT VTAVSAGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDQNELEKAASQLQQGLSATSD ENLKAVINLRLARVQVQLKQADTALKTLDAIKGEGWTAIVADLRGEALLSKGDKQGARSA WEAGVKSDASPALSEMMQMKINNLSI >gi|283548478|gb|GG730299.1| GENE 88 103169 - 104347 1351 392 aa, chain + ## HITS:1 COG:STM2520 KEGG:ns NR:ns ## COG: STM2520 COG1520 # Protein_GI_number: 16765840 # Func_class: S Function unknown # Function: FOG: WD40-like repeat # Organism: Salmonella typhimurium LT2 # 13 392 13 392 392 690 94.0 0 MQLRKLLLPGLLSVTLLSGCSLFSGEEDVVKMSPLPVVENQFTPSTDWSTSVGNGIGDFY SNLHPALADNVVYAADRAGVVKALNADDGKEVWSVNLGEKDGWFSRTSAQLSGGVTVSGG HVYIGSEKAQVYALNTSDGTTAWQTKVAGEALSRPVVSDGVVLIHTSNGQLQALNEADGA IKWTVNLDMPSLSLRGESAPATAFGAAIVGGDNGRVSAVLMQQGQMIWQQRISQATGPTE IDRLSDVDTTPVIVNGVVYALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVD QNDRVLALTTDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ KVDSSGFLTEPVSADGKLLIQAKDGTLYSITR >gi|283548478|gb|GG730299.1| GENE 89 104465 - 105937 1873 490 aa, chain + ## HITS:1 COG:STM2519 KEGG:ns NR:ns ## COG: STM2519 COG1160 # Protein_GI_number: 16765839 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Salmonella typhimurium LT2 # 1 490 1 490 490 941 95.0 0 MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGI DGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAIAKHLRARQKPTFLVANKT DGLDPDQAVIDFYSLGLGEIHPIAASHGRGVLSLLEHVLLPWMDDVAPQEEVDEDAEYWA KLAAEENGEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEDRVVVYDMPGTTRDS IYIPMERDGREYVLIDTAGVRKRGKITEAVEKFSVIKTLQAIEDANVVMLVIDAREGISD QDLSLLGFILNSGRSLVIVVNKWDGLTQEVKEQVKETLDFRLGFIDFARVHFISALHGSG VGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQPPLVRGRRVKLKYAHAGGYNPPIV VIHGNQVKDLPDSYKRYLMNYFRKTLDVMGTPIRIQFKEGENPFANKRNTLTPTQMRKRK RLIKHIKKSK >gi|283548478|gb|GG730299.1| GENE 90 106238 - 107779 1871 513 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 5 454 1 443 492 275 38.0 2e-73 MQSSVNQKESRTFFGHPYPLGSLFFTEMWERFSFYGIRPLLILFMAATVYDGGMGLAREN ASAIVGIFAGTMYLAALPGGWLADNWLGQQKAVWYGSILIALGHLSIALSAIMGDNLFFI GLMFIVLGSGLFKTCISVMVGTLYKKGDARRDGGFSLFYMGINMGSFIAPLISGWLIKTH GWHWGFGIGGIGMLVALIIFRVFAVPAMKRYDSEVGLDSTWNSPVVKRNGVGAWLLALAV GVAIVVTLIAQGVIVINPVAVASVLVYVIAASVALYFIYLFVFAGLSRKERARLLVCFIL LVSAAFFWSAFEQKPTSFNLFANDYTDRMIGDFEIPAVWFQSINALFIILLAPVFSWAWP KLASMNIRPSSITKFVIGILCAAAGFGLMMLAAQNVLSNGGAGVSPFWLVGSILMLTLGE LCLSPIGLATMTLLAPERMRGQMMGLWFCASALGNLAAGLIGGHVKADQLDMLPDLFARC SIALLICAAVLIVLIVPVRRMLENVQTKPATSA >gi|283548478|gb|GG730299.1| GENE 91 107968 - 108195 167 75 aa, chain + ## HITS:1 COG:no KEGG:ECL_03850 NR:ns ## KEGG: ECL_03850 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 69 1 69 73 110 85.0 2e-23 MSIVCPDCHAELAPQNGVAHCENCHKDVQLEARCPECHQSLQVLAACGAVDYFCQNGHGL ISKKRVEFLIKNNTD >gi|283548478|gb|GG730299.1| GENE 92 108382 - 110574 1948 730 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A2754 NR:ns ## KEGG: SeSA_A2754 # Name: not_defined # Def: Aec1 # Organism: S.enterica_Schwarzengrund # Pathway: Bacterial invasion of epithelial cells [PATH:sew05100] # 1 730 1 730 730 1223 80.0 0 MAQWMRIFIWLVLSGVAISASGANVPATSEKRSESVLPDLASDSAQKSEQGNNGRSYTEQ GADYFINSATQGFDNLTPEALESQARSYLQGQITSSAQSGVESLLSPYGKVRTNLAIGEG GNLEGSSLDYFVPWYDNQRTLLFSQFSAQRKEDRTIGNVGVGVRQNVGSWLLGGNVFYDY DFTRGHRRLGLGSEAWTDFLRFSGNYYHPLSDWKDSKDFEFYEERPARGWDVRAEAWLPF YPQLGGKLVYEQYYGDEVALFGSDNLQKNPHAVTVGMSYTPVPLLTLGADYKAGTGDNTD LSLNATMTYQFGTPLAAQIDPDNVKTQHSLIGSRTDFVDRNNFIVLEYREKDPLDVTLWL KADETNEHPECVIQDNPEAGIGLEKCKWTINALINHHYKIVTASWQAKNNANRILVMPVV KANTLTEGNKNRWNLVLPAWVNASTEEARQALNAWKVRITLTDEKGNTQNSGVVDITVRQ DRQIELIVDNFADTDRSDHSHAASALADGVDGVVMDLLLTDSYGDATDRNGNQLVDEAMK PELYDSSDKKVTLAATPCTAETPCVFIASRDKAAGTVTLSSTLPGTFRWKAKEEAYGDSN YVDITFLDKGASDLNAIIYQLKAAKPVNLISKEEQHPQLNKTYRFVLWRDKNNDGVFQMS EQLAEDEMALYDYQWEFTGQSTNGHTGALANTRNEDLVLPVTNKEAAQKFTANEEDGVQG YGIRVIYSQK >gi|283548478|gb|GG730299.1| GENE 93 110621 - 111589 1248 322 aa, chain + ## HITS:1 COG:no KEGG:SeHA_C2773 NR:ns ## KEGG: SeHA_C2773 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 322 1 320 320 406 74.0 1e-112 MQALLKRRLTKVALALVMAGYCSFPAMAANGNLKSGQWQIVTDSTGTIQGTVPWITRAAD KIAETDKSHVTVTIDRGSRTVGSSEGEKQFHVGDKVTVNWAIGDTEGDLDTNNTATKATV VWVRSKNQDGSDAVDIDGTTGKDTYTIQADDADYYLGIKITPTTTTGDPNVAPVVLLSDL STNAGGGGDDDDIPEGPVVDENVKVVIYESGTTANLLGSATKLKTNTTYKVLLWKDANGN GTYDTGEDVTADYHYRWKFTGTSLQLGASGGIVNASHNDGDLVIPVTNAEAKTAFDNGDS GGVTLGNDGVQGYGLSIDYQRK >gi|283548478|gb|GG730299.1| GENE 94 111703 - 119013 5498 2436 aa, chain + ## HITS:1 COG:no KEGG:SPAB_00430 NR:ns ## KEGG: SPAB_00430 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 18 2434 13 2433 2435 2679 62.0 0 MDGNLHNGKVYRFLLMALLMAGMVAAPASAVLKSGTWQEVNAATDAINGTVPLADGVTVP VYQGSILLNPEKTNTVSFSAMPRDFSTDDAPSALQLVNPVDTEGDIFAVPPVRWDTQMPV IDLIWADAATPDEPLDPQPAANKTFCAQNMAGGHFVVWPQINADNATTLPALYLQTITGT PFSNTISVLSQKIPVDIAAAAGDPVTVTADHFDEQLNAAKVKAGESIALTITTRDCQGEA VGNTAFVITRGDALNRQNGVNNAAPVHVGDTELTTVTTEYHGTTDANGKATVVVTQASGP GVKTPLTVFAAGAPQLKSSIAVIFTTLTSPDTPFANMWGHMTETSSADVEGETYTFTRPQ LAAETDGESGVVSASNENWALFNWGGADTHCEILPDARQLMGLKIARGDLVTSLGWPVAG NNEYWSSSAGTLMEYHLGVNMLTRSVVEERDETTSLVSCVDKASPAVKPEITLTLDSMDS ELNAARVRVGDSINMRVTIKAKETGAALPYRYFDLYVGDEQNRKGQTNAEARAEGSKYGW VDNPVLVGLTGSGTPNHYHGITGADGQLTLMLTQDDGAGVLTPLRVVAAEGAEATANVIF TVVTSPDNTQARMWGHMQGVVEAGNIYKRPLLASEASANTGSTVENHEDWATFSSVAAAT SQCGTGQVPGQLLLDALYSAHSDNAMATTYGWPTSSHSYISADTDGTQTAHVNLATGADG MFSGSEPNYLSCSGNELVTQLTVWFNDDVSLRQATAKVGETVMMHIHSVNALNGLVVPNA AFTVTMAQGKNRKGLITGFTDPSDGALEMGGTFYGASQASMTLQGTTDAEGNAAIAIAQP QGVGLLTQLNVVPVNSLITTPVERSVKFTVPTSPDTPNAQMWGHMVETVTVDGLTFERPK LASEVSATRTQLEDNETWARVTHSDAAGNAAAGGCAANRLPRADQLAALYNANSGGAMHN LQGWPIVESYWSATPASATAWQMTSLSNGTESADGSASVYTSCLTSDNPMAATITLTPEN AAQWNEASQAAKVKKGETLKLKVTVNDASGNPLPGATFVLSRGDGYTRQGSKHIAGSGDG IVAPVVIDGESLNDTATRIGGITGADGSKIINVTRPDTAGTKVAIAAALYDNASVSDSID TIFTVATSPDSDKAVMWGHMPETVTAANGTVFKRPLLFAEISAGSAVSSSVENNETWGIV DYYGIAEVCGAGYVPALADLQSLYAAWPAGAMNTQQGWPVDEKNYQNSTADLSRTPENRY VKSLNLRDNSITSQLWSEKLYFSCLQNAHPAATQLTLTSSLYNESDGFAKAKVGESIPLV ITTLDAQGNPVGNTPVIFGRGDSVGRANQDVNGSEAAMIQINHGEGRASRAEYYTVTGED GTLALEVSQDSGAGFKTPLQATIDDHSDTTQTLSVVFTVATSPDSEKANYWGHMAETVTD GNGQVYQRPKLASEFSATPGKTITLTYGDYDKGETWGMVTGSDAWSGSNGGCGQASLPGI SDLQALYSHYPNGAMRTTNGWPVSSAGSVSASQRWWAGEQVVDASNKAQYAVVNLFSGGD ATTAYNTSYYMQTCLATPRVLASKLTLTLANEDETTGIAKAKKGEKMAATVTATDSAGQP VAGVLIKVSRGNALTRAGGVYTANGADDIALTDIQPADQATFLMDTTSAYLYVKTNAQGQ VTFNLSQDATVGLKTPIMVTAADDSTLTDTKDAIFTVLTSPDSDKAVYWGHMPETFTNSN GVEFQRPLLSAEIPSTSNTSKYMENGETWYAWNRYSYMKSDNASPCGVSQLATMEELTTL YNDYPNGGLSTTFGLPVTSDKYWGAGNVVTDATSGYAYQYINLNNGETYASFSKSVQTAK LCRTTTRTLSIAMSSGSWNAEKLAATAKKGVKIPVTIAVTDQFGAPQANIVVRLDRGASQ TRNTSGTYDYTVSSNLSVTPDSEGANAATLTYRGGMSTDVRNWYATTDSKGEIRFELSQD STTGLKTGLTALLMDNSVMQSAMDVIFTVITSPDSDKARYWGHMPETAANSAGVTFRRPL LAAEMSSYSSTFTYNNEIWPLIAAANAQKAGASGCDVEYQPLLSDMQTLFFDNMSVSGGI GAVYGWPVGSNQFWWAADRAASTGNYQYISLSAGGSGSTSNSSTTAAQVCLVEARAQAGS ITLTSTAMDAAKSAAVAKQGESIPLTVTVKDTLGNPMANQPFTLSRGESLNRAGVVITDG DVEAEMGADDMVLRALTPVSGVSDMTTAASVYSGTTGSDGTATFTVNQNKTLGLKTSLTA ALASDTSKTATLDAIFTVHTSPDTDKANFWGDMPDTVSANGKTLHRPLLLAELPAGKTPP LHVLMNKEEWAMAHTVDASTWDLAAQCGSLSAAASLDDLKALHSGFSSTGWPSTSSYAYL SQTVCGANYCGYNHTSGTVNSYVNAKTTAGFASCAR >gi|283548478|gb|GG730299.1| GENE 95 119016 - 120389 1242 457 aa, chain - ## HITS:1 COG:STM2512 KEGG:ns NR:ns ## COG: STM2512 COG1570 # Protein_GI_number: 16765832 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Salmonella typhimurium LT2 # 1 447 1 447 449 770 93.0 0 MLSSQTTSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPSSGHWYFTLKDDTAQVRC AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQPAGEGLLQQKYEQLKAK LQAEGLFDQQHKQPLPSPAHCIGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDD APGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVGDLRAPTPSAAAEIVSRNQQELLRQIQSSQQRLGMAMDYYLANRSRRFTQLF HRLQQQHPQLRLARQQTTLERLRQRMSTALENQIKQANQRQQRMLQRLNQQNPQPRIHRA QSRIQQLEYRLAENIRTRLSVHRERFGNAVTHLEAVSPLATLARGYSVSTATNGGVLKKV RQVKAGDVMTTRLEDGWVESEVTKVTPQKKTRARKAV >gi|283548478|gb|GG730299.1| GENE 96 120550 - 122016 1860 488 aa, chain + ## HITS:1 COG:YPO2871_3 KEGG:ns NR:ns ## COG: YPO2871_3 COG0516 # Protein_GI_number: 16123063 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Yersinia pestis # 207 486 1 280 281 483 95.0 1e-136 MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIA LAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKELTERNGFAG YPVVTEDNELVGIITGRDVRFVTDLNQPVSVYMTPKERLVTVREGEARDVVFAKMHEKRV EKALVVDDSFHLLGMITVKDFQKAERKPNACKDEHGRLRVGAAVGAGAGNEERVDALVAA GVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALADAGVSAVKVGIG PGSICTTRIVTGVGVPQITAVSDAVEALEGTGIPVIADGGIRFSGDIAKAIAAGAAAVMV GSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGR VAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDALRTKAEFVRISGAGIQESHVHDVTITKE SPNYRMGS >gi|283548478|gb|GG730299.1| GENE 97 122081 - 123658 2055 525 aa, chain + ## HITS:1 COG:STM2510_2 KEGG:ns NR:ns ## COG: STM2510_2 COG0519 # Protein_GI_number: 16765830 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Salmonella typhimurium LT2 # 207 525 1 319 319 640 96.0 0 MTDNIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIREFNPSGIILSGGP ESTTEENSPRAPEYVFNAGVPVFGVCYGMQTMAMQLGGHVEGSNEREFGYAQVEVQTDSA LIRGIEDSLTAEGKPLLDVWMSHGDKVTAIPEGFVTVASTDSCPFAIMAHEEKRFYGVQF HPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVVRIREQVGDDKVILGLSGGVDS SVTAMLLHRAIGKNLTCVFVDNGLLRLNEAQQVMDMFGDHFGLNIVHVEGESRFLEALKG ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN VGGLPKEMKMGLVEPLRELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEY CDLLRRADAIFIEELHKADLYNKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDF MTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEWE >gi|283548478|gb|GG730299.1| GENE 98 123787 - 124665 963 292 aa, chain - ## HITS:1 COG:STM4102 KEGG:ns NR:ns ## COG: STM4102 COG0668 # Protein_GI_number: 16767368 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Salmonella typhimurium LT2 # 1 282 1 282 285 456 82.0 1e-128 MNGFSLFPKIRNGIEWIAGHSDAVIQFGWNVVAAIILLFVGKFISRLLCRGLEKLLLKRK VDRTIIQFFTALVRYITLAFFVVAALGRVGIETSSIIAVIGAAGLAIGLALQGSLSNFAA GVLLVSLRPFRAGEIVQIGAVTGTVEKVHIFSTTLLTADSKEVVIPNGKIIADNIINYSR HPFRRIDLVIGVGYQSRIADVKRVINHIIEQDSRIDKQRGVTVRLGELGASALNFYVRVW VPNIEYWNTYYDLLENIKEALDANHIDLPYPQMDIRVENVTSQSQPHLQLVD >gi|283548478|gb|GG730299.1| GENE 99 125034 - 125237 70 67 aa, chain - ## HITS:1 COG:no KEGG:CKO_00283 NR:ns ## KEGG: CKO_00283 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 59 1 59 63 82 81.0 5e-15 MSQVTSLRKRHRFNSRMIRIVLLISFLFFFGRFVYSAIGAWHHHQDKKESQQLTQPQQTS PTQTDVR >gi|283548478|gb|GG730299.1| GENE 100 125253 - 125426 70 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832120|ref|ZP_06351861.1| ## NR: gi|283832120|ref|ZP_06351861.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 17 57 1 41 41 63 100.0 3e-09 MYPTKGDAHIKAHCEGMVNSWLCKIASVVLPSYVMKINIIIYMNNELTLKNNEKSNN >gi|283548478|gb|GG730299.1| GENE 101 125756 - 127858 1217 700 aa, chain + ## HITS:1 COG:yfgF_3 KEGG:ns NR:ns ## COG: yfgF_3 COG2200 # Protein_GI_number: 16130428 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 420 686 1 267 272 469 83.0 1e-131 MLFFGWAALPGIIISIIWYKYPQVGLFETLSIISHFIVTIVLAWGGYKVFAPRRNNVSHG DSHLMFQRMFWQVFCPATLFLILFQFAAFVGVYESKSGMVGVMPFNTGTLINYQALLVGN LVGVPLCYVIIRTIRNPLHLRGFFSQLKQQFDSKVTKTEFAVWLIILTALMSMLCMPLNE QSSIFSTNYTLSLLLPVMLWGAMRYGYRFISLIWSVVLITAIHYYQRYMPWYSGYDNQLA ITSSSYLVFSFIVNFIAVLATRQRFVTRRNHRLAFFDPMVHIPNLRALNRDLRKSPWSVL CFLRVPGMELLVKNYGIMLRIQYKQKLAQWITPLLEQDEHVYQLSGNDLVLRFNTEAHQE RIEALDRHIKQFRFIWDGMPLQPQVGISFCYVRAPVNHIYLLLGELSTIAEISLATNSPE NMQRRGVMHLQRDLKDKVAMMNRLQQALEHNHFFLMAQPISGVRGDVYHEILLRLRGDDG ETIAPDSFLPVAHEFGLSSSIDMWVIENTLKFMAQNREKMPARRFAINLSPTSVCRARLP HDINQLLTKYKVEAWQLIFEVTESNALTDAEQAQATLLQLQSLGCQIAIDDFGTGYASYA RLKNVNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKRMLVVAEYVESEEIRSAVIS LGIDYLQGYLIGKPQPLSATLEEQVPDEPAPVGSLCCDIG >gi|283548478|gb|GG730299.1| GENE 102 127838 - 129307 1443 489 aa, chain - ## HITS:1 COG:STM2502 KEGG:ns NR:ns ## COG: STM2502 COG0248 # Protein_GI_number: 16765822 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Salmonella typhimurium LT2 # 1 489 25 513 513 900 92.0 0 MVIARVVDGAMQIIGRLKQRVHLADGLGADNKLSEEAMERGLSCLSLFAERLQGFPPSSV CIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDI GGGSTELVIGEDFEPKLVESRRMGCVSFAQMYFPGGAISRENFRRARMAAAQKLETLTWQ FRIQGWNVALGASGTIKAAHEVLLEMGEKDGFITPERLEKLTAEVLKHASFDALSLPGLS EERKAVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLAN QYNIDSEQARRVLETTMQMYDQWHAQQPKLANPQLEALLRWAAMLHEVGLNINHSGLHRH SAYILQNSDLPGFNQEQQLMMATLVRYHRKAVKLDDLPRFTLFKKKQFLPLIQLLRLGVL LNNQRQATTTPPTLTLITEDNHWTLRFPHDWFSQNALVLLDLEKEQQYWEAVTGWRLKIE EESSPDIAA >gi|283548478|gb|GG730299.1| GENE 103 129384 - 131450 2081 688 aa, chain - ## HITS:1 COG:ECs3363 KEGG:ns NR:ns ## COG: ECs3363 COG0855 # Protein_GI_number: 15832617 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Escherichia coli O157:H7 # 1 688 1 688 688 1307 96.0 0 MGQEKLYIEKELSWLAFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRR IIISEEQGSNSHSRHLLGKIQARVLKADQEFDGLYNELLLEMARNQIFLINERQLSVNQQ SWLRHYFKQYLRQHITPILINRETDLVQFLKDDYTYLAVEIIRGDTIRYALLEIPSDKVP RFVNLPPETPRRRKPMILLDNILRYCLDDIFKGFFDYDALNAYSMKMTRDAEYDLVHEME SSLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVLREKLTISRYDSIVPGGRYHNFKDF INFPNVGKANLVNKPLPRLRHIWFDNEKFRNGFDAIRERDVLLYYPYHTFEHVLELLRQA SFDPSVLAIKINIYRVAKDSRIIDAMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTE AGVHVIFSAPGLKIHAKLFLISRKEGDEVVRYAHIGTGNFNEKTARLYTDYSLLTADSRI TNEVRRVFNFIENPYRPVTFDYLLVSPQNSRRLLYAMIDKEIANAQQGLPSGITLKLNNL VDKGLVDRLYAASGSGVPVNLLIRGMCSLIPNLEGISDNIRVISIVDRYLEHDRVYIFEN GGDKQVYLSSADWMTRNIDYRIEVATPLLDPRLRQRVLDIIDILFSDTVKARYIDKELSN RYVPRGNRRKVQSQLAIYDYIKSLEQPD >gi|283548478|gb|GG730299.1| GENE 104 131654 - 132298 501 214 aa, chain - ## HITS:1 COG:STM2500 KEGG:ns NR:ns ## COG: STM2500 COG0299 # Protein_GI_number: 16765820 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Salmonella typhimurium LT2 # 3 213 2 212 212 370 85.0 1e-103 MKNIVVLISGNGSNLQAIMDACEQKKINGTIRAVFSNKADAFGLERARGANIPAHSLEAA QFASREAFDRQLIQEIDAYAPDVVVLAGYMRILSPAFVAHYSERLLNIHPSLLPKYPGLH THRQVLDNGDEEHGTSVHFVTDELDGGPVILQAKVPVFEGDSEDDVTARVQAQEHAIYPL VVSWFIDGRLKMRDNAAWLDGVRLPPQGYAADEA >gi|283548478|gb|GG730299.1| GENE 105 132295 - 133332 1229 345 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169632702|ref|YP_001706438.1| phosphoribosylaminoimidazole synthetase [Acinetobacter baumannii SDF] # 2 345 7 356 356 478 67 1e-133 MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVL VSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAA SVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVADGDV LIALGSSGPHSNGYSLVRKIVEVSGCDPETTELEGKPLADHLLAPTRIYVKSILELIEKV DVHAIAHLTGGGFWENIPRVLPENTQAVIDESSWQWPAVFNWLQTAGNVSQHEMYRTFNC GVGMVIALPAAEVDKALALLNEKGENAWKIGIIKASDSEQRVVIE >gi|283548478|gb|GG730299.1| GENE 106 133628 - 135058 1333 476 aa, chain + ## HITS:1 COG:SP0303 KEGG:ns NR:ns ## COG: SP0303 COG2723 # Protein_GI_number: 15900236 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Streptococcus pneumoniae TIGR4 # 1 474 1 475 478 765 75.0 0 MSGFKADFMWGGAVAAHQLEGGWQEGGKGISVADVMTAGAHGVAREITDGVIAGKNYPNH EAIDFYHRYKEDIKLFAEMGFKCFRTSIAWTRIFPLGDEAQPNEAGLQFYDDLFDECLKY GIEPVITLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAGVVFTRYQHKVKYWMTFNEINNQ ANYHEDFAPFTNSGLKYQPGEDREPVMYQAAHYELVASALAVKAAREINPALQVGCMIAM CPIYPLTCAPDDMMMAMNAMHRRYWFTDVHVRGRYPQHLLNYFARRGFELDITEQDRQAL TQGCVDYIGFSYYMSFATQATADNPQLDYDESKHLVSNPYVQKSDWGWQIDPVGLRYSLN WFWDHYQLPLFIVENGFGAIDVRESDGTVNDQYRIDYLAAHIREMKKAVVEDGVDLMGYT PWGCIDLVSAGTGEMKKRYGFIYVDKNNDGSGTLARSPKKSFSWYQNVIQTNAEYL >gi|283548478|gb|GG730299.1| GENE 107 135242 - 135868 994 208 aa, chain + ## HITS:1 COG:STM2498 KEGG:ns NR:ns ## COG: STM2498 COG0035 # Protein_GI_number: 16765818 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Salmonella typhimurium LT2 # 1 208 1 208 208 385 98.0 1e-107 MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEATAGLETEKVTIEGWNGP VEVDQIKGKKITVVPILRAGLGMMEGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN IDERMALIVDPMLATGGSVIATIDLLKNAGCTSIKVLVLVAAPEGIAALEKAHPDVELYT ASIDQGLNEHGYIIPGLGDAGDKIFGTK >gi|283548478|gb|GG730299.1| GENE 108 135965 - 137254 1026 429 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 3 416 2 428 447 399 47 1e-109 MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFI CKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVMF PPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQLPDSKTIIISMVTLAVTVFGSVLFRGFM AIIPILIGVLAGYALSFAMGVVDTTPIAQAHWFALPTFYTPRFEWVAILTILPAALVVIA EHVGHLVVTANIVKKDLIRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRV YSTWVIGGAAIFAILLSCVGKLAAAIQIIPLPVMGGVSLLLYGVIGASGIRVLIESKVDY NKAQNLILTSVILIIGVSGAKVHIGAAELKGMALATIVGVCLSLIFKVISLLRPEEVVLD AKDADSPQQ >gi|283548478|gb|GG730299.1| GENE 109 137326 - 138051 644 241 aa, chain + ## HITS:1 COG:STM2496 KEGG:ns NR:ns ## COG: STM2496 COG0593 # Protein_GI_number: 16765816 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Salmonella typhimurium LT2 # 1 241 1 241 241 471 97.0 1e-133 MKSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWSRE GAGRSHLLHAACAELSARGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDSL WEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQ ALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK L >gi|283548478|gb|GG730299.1| GENE 110 138089 - 138448 569 119 aa, chain - ## HITS:1 COG:STM2495 KEGG:ns NR:ns ## COG: STM2495 COG1393 # Protein_GI_number: 16765815 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Salmonella typhimurium LT2 # 1 119 1 119 119 182 83.0 1e-46 MSDAIKIYHNPRCSKSRETLELLKSNGVDPEVVLYLETPADAATLRKLLQMLGMSSAREL MRQKEDLYKSLNLADKNLSEDALIQAMVENPKLMERPIVVAKDQARIGRPPEQVLEIIG >gi|283548478|gb|GG730299.1| GENE 111 138572 - 140035 1439 487 aa, chain - ## HITS:1 COG:STM2494 KEGG:ns NR:ns ## COG: STM2494 COG4783 # Protein_GI_number: 16765814 # Func_class: R General function prediction only # Function: Putative Zn-dependent protease, contains TPR repeats # Organism: Salmonella typhimurium LT2 # 1 487 1 487 487 826 90.0 0 MFRQLKKNLVATLIAALSIGQVAPAFADTEDTLPDMGTSAGSTLSIGQEMQMGDYYVRQL RGSAPLINDPLLTQYINTLGMRLVSHANSVKTPFTFFLINNDEINAFAFFGGNVVLHSAL FRYSDNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLTWAGALGSILLAMASPQAGMA ALTGTLAGTRQGVITFTQQNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARYSSRPP EILLTHPLPESRLADARNRANQMRPVVVQSSEDFYLAKARTLGMYNSGRNQLTGDLLTNW SKGNVREQRAAQYGRALQAMEASKYDEARKALQPLLAADPNNAWYLDLATDIDLGQKKTG DAINRLKNARDLRVNPVLQLNLANAYLQGGQAKEAANILNRYTFNHKDDTNGWDLLAQTE ASLGNRDQELAARAEGYALAGRLDQAISMLSSASSQVKLGSQQQARYDARIDQLRQMEER FKPYTKM >gi|283548478|gb|GG730299.1| GENE 112 140259 - 141323 1291 354 aa, chain + ## HITS:1 COG:ECs3355 KEGG:ns NR:ns ## COG: ECs3355 COG0628 # Protein_GI_number: 15832609 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 1 353 1 353 353 572 95.0 1e-163 MLEMLMQWYRRRFSDPEAIALLIILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLE HIGCSRRWATSIVLVVFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRR YPALMDAGIIDAMAENMRSRMLTMGDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLIKDK GQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSL LLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVL FSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVMHAWPDGQAVDEP >gi|283548478|gb|GG730299.1| GENE 113 141490 - 142152 688 220 aa, chain + ## HITS:1 COG:STM4514 KEGG:ns NR:ns ## COG: STM4514 COG3314 # Protein_GI_number: 16767758 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 10 220 86 292 294 288 72.0 6e-78 MGHNTHTQQQKVGWGGYLAFIITIILFSGMFAKSTEWWRVFDFTVLNGAFGKVNAAGDTV VSFRGTGGMGAKDGFLFALELAPSVILSLGIIAVTEGLGGLRAAQQLMTPVLRPLLGIPG VCSLALIANLQNTDAAAGMTKEMAEEGVITEQERAIFACWQTSGSACITNYFSSGAALFT VVTVPVITPLAVILVFKFVGANLLRLWIVQLENRRTQQEA >gi|283548478|gb|GG730299.1| GENE 114 142154 - 142615 529 153 aa, chain + ## HITS:1 COG:STM4513 KEGG:ns NR:ns ## COG: STM4513 COG0700 # Protein_GI_number: 16767757 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Salmonella typhimurium LT2 # 1 152 1 152 153 224 84.0 6e-59 MTTQVRKNVMDMFIDGARRGFTIATTSLLPNVVMAFVIIQALKVTGLLEIVGRVCEPIMA LWGLPGESATVLLAAVMSMGGGVGVCASLVVAGTLSGHDATVLLPAIYLMGNPVQNVGRC LGTAGVHPRYYPLIIAVCVINALLSIWVMQVIA >gi|283548478|gb|GG730299.1| GENE 115 142627 - 143790 1056 387 aa, chain + ## HITS:1 COG:no KEGG:CKO_00306 NR:ns ## KEGG: CKO_00306 # Name: not_defined # Def: isoaspartyl dipeptidase # Organism: C.koseri # Pathway: not_defined # 1 387 1 387 387 665 85.0 0 MNCSILNLTLFQQGHVYAPEDLGRQDILVSGSKIVAIAPSISPEDFPGCECINLDGAMVC PGFIDQHVHLIGGGGEAGPHTRTPEVRLSRLVEAGVTSVVGLLGTDGITRHPESLLAKTR ALEFEGISAWMLTGAYSLPSPTITGSIDRDVALIDKVIGVKCAVSDHRSSAPDSSALANM AAQSRVGGLLGRKPGISVFHMGDSPRMLEPLYQILECSDVPMTKLLPTHVNRAQPLFQAA LEYARKGGYIDITSSIDEPVDPATAIATALRQDVPLSRITLSSDGNGSQPEFDEDGNLTG IGVAGFESLAETVRQLVKIHAIPLEQALCPLTRTVAEFLGLEHKGRLAVGCDADILVLND ELEVHHLWAKGKAVVKEKKACVKGTFE >gi|283548478|gb|GG730299.1| GENE 116 143911 - 144381 462 156 aa, chain - ## HITS:1 COG:STM2491 KEGG:ns NR:ns ## COG: STM2491 COG1225 # Protein_GI_number: 16765811 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 1 156 1 156 156 316 95.0 1e-86 MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDQL KKAGVEVLGISTDKPEKLSRFAEKEVLNFTLLSDEDHQVCEQFGVWGEKSFMGKTYDGIH RISFLIDAEGKIEHVFDDFKTSNHHDVVMNWLKENA >gi|283548478|gb|GG730299.1| GENE 117 144381 - 144953 366 190 aa, chain - ## HITS:1 COG:STM2490 KEGG:ns NR:ns ## COG: STM2490 COG2716 # Protein_GI_number: 16765810 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system regulatory protein # Organism: Salmonella typhimurium LT2 # 1 190 23 212 212 357 93.0 7e-99 MTSSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGTWNA ITLIESTLPLKGAELDLLIVMKRTTARPRPAMPATVWVQVDVPDSPHLIERFTALFDSHQ MNIAELVSRTQPAENGKAAQLFIQITAHSPASQDAANIEDAFKALCTELNAQGSINVVNY SQHDEQDGVK >gi|283548478|gb|GG730299.1| GENE 118 145099 - 145977 912 292 aa, chain + ## HITS:1 COG:ECs3340 KEGG:ns NR:ns ## COG: ECs3340 COG0329 # Protein_GI_number: 15832594 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli O157:H7 # 1 292 1 292 292 548 92.0 1e-156 MFTGSIVALVTPMDEKGKVCRSSLKKLIDYHVASGTSAIVSVGTTGESATLSHDEHGDVV MMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGVVGCLTVTPYYNRPTQEGLFQHFK AIAEHTDLPQILYNVPSRTGCDMLPETVGRLAKVKNIIAIKEATGNLSRVHQIKELVSDD FILLSGDDATGLDFMQLGGHGVISVTSNVAARDMAEMCKLAAAGHFAEARVINQRLMPLH NKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDNAREIVKAALKHAGLL >gi|283548478|gb|GG730299.1| GENE 119 145994 - 147028 1088 344 aa, chain + ## HITS:1 COG:nlpB KEGG:ns NR:ns ## COG: nlpB COG3317 # Protein_GI_number: 16130402 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1 344 2 345 345 592 92.0 1e-169 MAYSVQKSRLAKVAGVSLVMLLAACSSDSRYKRQVSGDESYLEAAPLAELHAPAGMILPV TTGDYNIPVTNGSGAVGKALDIRPPAQPLALVTGARTQIAGDTSTLLVENGRGNTLWPQV VSVVQSKNYTIAKRDDASQTLTTDWVDWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLIN LEQAGKPVADAASMQRYSAEMMNVISAGLDKNATDAANAAQNRSAATMDVQSAADDTGLP MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGSIAVTYKPLSDGDWQELGAKDPGLVS GDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSK >gi|283548478|gb|GG730299.1| GENE 120 147140 - 147853 1047 237 aa, chain + ## HITS:1 COG:STM2487 KEGG:ns NR:ns ## COG: STM2487 COG0152 # Protein_GI_number: 16765807 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Salmonella typhimurium LT2 # 1 237 1 237 237 459 96.0 1e-129 MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNHFIMTK LQEAGIPTQMERLLSDTECLVKKLEMVPVECVVRNRAAGSLVKRLGVEEGIELNPPLFDL FLKNDAMHDPMINDSYCETFGWVSKENLARMKELTYKANDVLKKMFDDAGLILVDFKLEF GLYKGEVVLGDEFSPDGSRLWDKETLDKMDKDRFRQSLGGLIEAYEAVAHRLGVKLD >gi|283548478|gb|GG730299.1| GENE 121 147983 - 148849 1009 288 aa, chain + ## HITS:1 COG:ECs3337 KEGG:ns NR:ns ## COG: ECs3337 COG2321 # Protein_GI_number: 15832591 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Escherichia coli O157:H7 # 1 288 1 287 287 507 91.0 1e-143 MRWQGRRESNNVEDRRNSSGGGPSMGGPGFRLPSGKGGIILLVVVLVAGYYGVDLTGLMT GQPVSQQQSSRSISPNDDEAAKFTSVILATTEDTWGQQFEKMGRTYQQPKLVMYRGATRT GCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFAQGYVIAHEVGHHVQKLLGI EPKVRQMQQNASQAEVNRLSVRMELQADCFAGVWGHSMQQQGVLESGDLEEALNAAQAIG DDRLQQQGQGRVVPDSFTHGTSEQRFTWFKRGFDSGDLGQCNTFGKSI >gi|283548478|gb|GG730299.1| GENE 122 148865 - 150880 1464 671 aa, chain + ## HITS:1 COG:ypfI KEGG:ns NR:ns ## COG: ypfI COG1444 # Protein_GI_number: 16130399 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase fused to an acetyltransferase # Organism: Escherichia coli K12 # 1 671 1 671 671 969 73.0 0 MSDKAALSALTEQMTREGIRRLLIISGEGRWRQEQALALRNALPGDWLWVGAQAPAEPSC TPQALQTLLGREFRHAVFDAGQGFDAAAFAALSGTLVAGSWLVLLTPPWHSWQTHPDADS LRWSDCADPIPTPHFVEHVKRVISRDGQALHWQQHQPASYPHFLVRADWQAATGEPQPEQ AMILNDLLAMPPGVVVVTAARGRGKSALAGQLISRISGTAIVTAPAKAATDVLAQFAAER YRFMAPDALLSSSVTADWLIVDEAAAIPAPLLHQLVARFPRTLLTTTVQGYEGTGRGFLL KFCARFPHLQRYELQRPVRWAPGCPLEKIVSDALVFDDETFTHAPLGDLHFSAFEQQSWH DNPALPLAVYQLLSGAHYRTSPLDLRRMMDAPGQHFLQASCAESVAGAAWLVDEGGLSAE LSQAVWAGYRRPRGNLVAQSLAAHGGDPLAATLVGRRVSRIAVHPARQREGIGQQLITQA QRCSTQCDYLSVSFGYTVELWRFWQRCGFVLVRMGNHREASSGCYTAMALLPISDAGKRL AGRERQRLRRDAEILARWNGEDIPLTPLKETTLNEDDWNELAGFAFAHRPLLTSLGCLTR LLEHCELPLPALRGRLQAKRSDAELCQQLKISGRKALLVVQRAEAAQALKQLDAEGEQRL QNRIMQWQNFH >gi|283548478|gb|GG730299.1| GENE 123 150954 - 151652 829 232 aa, chain + ## HITS:1 COG:ECs3335 KEGG:ns NR:ns ## COG: ECs3335 COG0400 # Protein_GI_number: 15832589 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1 232 9 240 240 405 85.0 1e-113 MKHDHFVVQSPEKPAQQLLLLFHGVGDNPVAMGEIGSWFAPLFPDALIVSIGGAEPYGST SGRQWFSVQGVTEENRQARVDAIMPVFIETVRYWQKHSGVSPQATALIGFSQGAIMSLES IKAEPGLASRVIAFNGRYATLPEVATTATTVHLIHGGEDRVIELSHAVAAQEALIRAGGD VTLDIVENLGHAIDEHSMQFALDHLRFTVPKHYFDEALGGGTPNDDDVIAMI >gi|283548478|gb|GG730299.1| GENE 124 151717 - 151917 324 66 aa, chain - ## HITS:1 COG:no KEGG:ECBD_1217 NR:ns ## KEGG: ECBD_1217 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 66 1 66 66 80 92.0 3e-14 MDWLAKYWWILVLVFLVGVLLNVIKDLKRVDPKKYLANKPELPPHRDFNDKWDDDDDWPN KDQPQK >gi|283548478|gb|GG730299.1| GENE 125 151945 - 153072 1222 375 aa, chain - ## HITS:1 COG:STM2483 KEGG:ns NR:ns ## COG: STM2483 COG0624 # Protein_GI_number: 16765803 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Salmonella typhimurium LT2 # 1 375 1 375 375 756 95.0 0 MSCPVIELTQQLIRRPSLSPDDAGCQALMIERLRAVGFTVERMDFGDTQNFWAWRGKGET LAFAGHTDVVPAGDVDRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPN HQGRLAFLITSDEEASAKNGTVKVVEALMARNERLDYCLVGEPSSTEIVGDVVKNGRRGS LTCNLTIHGVQGHVAYPHLADNPVHRAAPMLNELVAIEWDQGNEFFPATSMQIANIQAGT GSNNVIPGELFIQFNFRFSTELTDEMIKSRVLELLDKHQLRYTVDWWLSGQPFLTERGKL VDAVVNAIEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQ LLARMYQRIMEQLVA >gi|283548478|gb|GG730299.1| GENE 126 153076 - 153432 354 118 aa, chain - ## HITS:1 COG:STM2482 KEGG:ns NR:ns ## COG: STM2482 COG1393 # Protein_GI_number: 16765802 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Salmonella typhimurium LT2 # 1 118 1 118 118 213 83.0 6e-56 MITLYGIKNCDTIKKARRWLEEHGIDYRFHDYRVDGLDNALLQSFISELGWQPLLNTRGT TWRKLDEATRNQITTADAAAALMIEMPAIIKRPLLCTPGKPMLLGFSESSYTLFFNEV >gi|283548478|gb|GG730299.1| GENE 127 154024 - 157137 3278 1037 aa, chain - ## HITS:1 COG:STM2481 KEGG:ns NR:ns ## COG: STM2481 COG0841 # Protein_GI_number: 16765801 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Salmonella typhimurium LT2 # 1 1037 1 1037 1037 1972 95.0 0 MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT VTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQNQLQSAMRKLPQ AVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRINGVGDIDAYGS QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL QTPDQFRDITLRVNQDGSEVKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEM ATATLVINRLNELSQYFPHGLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQ NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM SEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVL SVLVAMILTPALCATLLKPLHKGEQHGQTGFFGWFNRMFNRNAERYEKGVARILHRSLRW ILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSIQLPSGSTQQQTLKVVEEVEKYYFTH EKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDERDTTTGTSFAIIERATKAFNKIKEA RVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDKLIELAGKDSSLTRVRHNGLD DSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRML PDDINLWYVRNSSGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD VMESLVRQLPTGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVM LVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNEKGHDLLDA TLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSGGQHAVGTGVMGGMLSATILAIFFVP LFFVLVRRRFPLKPKPE >gi|283548478|gb|GG730299.1| GENE 128 157322 - 159019 1716 565 aa, chain - ## HITS:1 COG:STM2480 KEGG:ns NR:ns ## COG: STM2480 COG3850 # Protein_GI_number: 16765800 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Salmonella typhimurium LT2 # 1 565 1 566 566 988 90.0 0 MTVKRPVSASLAKAFFYIVLLSILSTGIALLTLTSSLRDAEAINVAGSLRMQSYRLGYDL QSQSPQLNAHRQLFQQALNSSALQNLNAWYVPQTVKSRYGRLHANWLEMNARLIDGDLKW YQANINNYVDQIDLFVLALQHYAERKVMLVFGISLAGGIGIFTLVFFTLRRIRQQVVRPL NKLVMASQHIEHGQFDIPPLDTGLPNELGLLGKTFSQMSSELHKLYRSLEASVAEKTHDL HEANRRLEVLYQCSQALNTSQIDVYCFRHILQIVREHDAAYFLELTVGDNWRISEGTKSP ELPMQILPVTMQETVYGELHWQSPNVNASTPLLNSVSSMLGRGLYFNQAQKHFQQLLLME ERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNAPAQSIMADFSQALNDAYRQLRELL TTFRLTLQQADLPSALHEMLETLQNQTSAKLMLDCRLPTLALDAQMQVHLLQIVREAVLN AIKHANASEIAVSCVTAPDGNHTVYIRDNGIGIGEPHEPTGHYGLNIMRERAERLSGTLT FSQPSGGGTLVSISFRSAESDSKLT >gi|283548478|gb|GG730299.1| GENE 129 159226 - 159456 78 76 aa, chain - ## HITS:1 COG:no KEGG:CKO_00324 NR:ns ## KEGG: CKO_00324 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 74 113 186 187 107 70.0 1e-22 MVAGHRTALLLVLNDGNSGLEMPRAQDMLLAIVGHDAGDLTGMATQALLAIDHNKTIHGF LLFWLQKPYSLYDCCY >gi|283548478|gb|GG730299.1| GENE 130 159586 - 161262 1258 558 aa, chain + ## HITS:1 COG:aegA_2 KEGG:ns NR:ns ## COG: aegA_2 COG0493 # Protein_GI_number: 16130393 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Escherichia coli K12 # 80 558 1 479 479 915 90.0 0 MQIVLTPVAKGKMKATAHKCDLCQGREEGPACVENCPAQALQLVTENALTGLSKARRLRT ASLESQPWHSSATDFTPHALTKREQMQATPARGEPDKLAIEARKTSFEEIYLPFRTAQAE REASRCLKCGDHSICEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNCLPEVTGRVCPQ DRLCEGACTVRNEHGAVTIGNIERYISDRALSKGWRPDLSHVQKVDKRVAIIGAGPAGLA CADVLARNGLHATVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVG KDVELASLLEEYDAVFVGVGTYRSMKADLPNEDAPGVYDALPFLIANTKQVMGLDELPEE PFIDTAGLNVVVLGGGDTAMDCVRTALRHGASQVTCAYRRDEANMPGSKKEVKNAREEGA NFEFNVQPVELMLNADGRVNGIRFLRTQLGEPDANGRRRPVPVAGSEFVMPADAVIMAFG FNPHGMPWLETHGVKVDNWGRIAADVESTYRYQTSNPKIFAGGDAVRGADLVVTAMAEGR HAAQGIVDWLGVKSVKSH >gi|283548478|gb|GG730299.1| GENE 131 161419 - 161994 757 191 aa, chain + ## HITS:1 COG:ECs3329 KEGG:ns NR:ns ## COG: ECs3329 COG0494 # Protein_GI_number: 15832583 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 191 1 191 191 350 92.0 9e-97 MSQKITLIKDKVLSDNYFILRNITYDLTRSNGEVIRHKREVYDRGNGATILLYNAEKKTV VLIRQFRVATWVNGNEDGQLIETCAGLLDNDEPEACIRKEAIEETGYEVGEVRKLFELYM SPGGVTELIHFFIAQYSDSQRANAGGGVEDEDIEVLELPFTQALEMIKTGEIRDGKTVLL LNYLQSSHLMD >gi|283548478|gb|GG730299.1| GENE 132 162105 - 163148 822 347 aa, chain + ## HITS:1 COG:no KEGG:CKO_00327 NR:ns ## KEGG: CKO_00327 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 347 1 347 347 594 82.0 1e-168 MRYRVIFLFLLGLLPIRLLWAAPAQQAFSDWQVTCNNQNFCVARNTGEHHGLVMTLSRSA GAHTDAVLRIELGGLESSHVKESEIAPRLLLDGAPLSLSGERWRITPWQLMTDDPATISA FLQTVQDAKAITLQKGAQTLSLAGLKAALLFIDAQQKRVGSETAWIEKGDEPPLSVPPAP ALKGVAVINPTPTPLTQQERSELLDYGNWRINGIRCSIDPLRREMRVTALTDDKALLMIG CEAGAYNTIDLAWIVSRTKPLTSSAVRLSLPFKTDAESRDMELTNATFDEKSRELVTLAK GRGLADCGIQTRWRYDGQRFRLVRYAQEPSCDNWHGPDAWPTLWITR >gi|283548478|gb|GG730299.1| GENE 133 163138 - 165132 2083 664 aa, chain - ## HITS:1 COG:tktB KEGG:ns NR:ns ## COG: tktB COG0021 # Protein_GI_number: 16130390 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Escherichia coli K12 # 1 662 1 662 667 1277 93.0 0 MTRKELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLRHNPTDPSWYDRDRFI LSNGHASMLLYSLLHLSGYDLPLEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLA NAVGLAIAERTLAAQFNQPDHEIVNHYTWVFMGDGCLMEGISHEVCSLAGTLGLGKLIGF YDHNGISIDGETDGWFTDDTAKRFEAYHWHVVHEIDGHDPEAVKKAIQEAQAVTDKPSLI ICRTVIGFGSPNKAGKEEAHGAALGEEEVALTRQKLGWHHPAFEIPKEIYRAWDAREKGE KAQQAWNEKFAAYQQAHPELAAEFTRRMSGGLPEEWEETTQKYITDLQANPAKIATRKAS QNTLNAYGPMLPELLGGSADLAPSNLTIWKGSTSLKEDHAGNYIHYGVREFGMTAIANGI AHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLAS LRLTPNFSTWRPCDQVEAAVGWKLAVERHDGPTALILSRQNLAQVERTPEQVQQIARGGY VLKDGGGKPDVILIATGSEMEITLLAAEKLTGEGRNVRVVSLPSTDIFDAQDEAYRESVL PANVSARVAIEAGIADYWYKYVGLKGAIVGMTGYGESAPADKLFPFFGFTVDNIVAKAHK VLNA >gi|283548478|gb|GG730299.1| GENE 134 165412 - 167691 2728 759 aa, chain + ## HITS:1 COG:STM2472_1 KEGG:ns NR:ns ## COG: STM2472_1 COG0281 # Protein_GI_number: 16765792 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Salmonella typhimurium LT2 # 1 434 1 434 434 832 98.0 0 MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIEKDPLAAYKY TARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEVDELDPDKFI NVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRV VEKNISDVRMVVSGAGAAAIACMNLLVALGMQKHNIVVCDSKGVIYKDREPNMAETKAAY AVVDDGKRTLDDVIDGADIFLGCSGPKVLTQEMVKKMARAPMILALANPEPEILPPLAKE VRSDAIICTGRSDYPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVHAIAELAHAEQS EVVASAYGDQDLSFGPEYIIPKPFDPRLIVKIAPAVAKAAMDSGVATRPIADFDAYIDKL TEFVYKTNLFMKPIFSLARKAPKRVVLTEGEEARVLHATQELITLGLAKPILIGRPSVIE MRIQKLGLQIKAGVDFEIVNNESDPRFKEYWSEYYQIMKRRGITQEQAQRAVIANTTVIG AIMVQRGEADAMICGTIGDYHEHFSVVKEVFGHRDGVHTAGAMNALLLPSGNTFIADTYV NDDPTPEQLAEIAVMAAETVRRFGIEPKVALLSHSNFGSSDCPSASKMRDALALIKARVP ELMIDGEMHGDAALVESIRNDRMPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTV GPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTQPL >gi|283548478|gb|GG730299.1| GENE 135 167852 - 168187 388 111 aa, chain + ## HITS:1 COG:ECs3324 KEGG:ns NR:ns ## COG: ECs3324 COG4810 # Protein_GI_number: 15832578 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli O157:H7 # 1 111 25 135 135 200 93.0 5e-52 MEKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPEAGAIGIMTLTPGETAMIAGDLAM KAADVHIGFLDRFSGALVIYGSVGAVEEALLQTVSGLGRLLNFTLCSLTKS >gi|283548478|gb|GG730299.1| GENE 136 168200 - 168679 267 159 aa, chain + ## HITS:1 COG:STM2469 KEGG:ns NR:ns ## COG: STM2469 COG4917 # Protein_GI_number: 16765789 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 1 159 1 159 159 276 84.0 1e-74 MKRIAFVGTVGAGKTTLFNALQGNYSLARKTQAVEFNENGDIDTPGEYFSHPRWYHALIT TLQDVDTLIYIHAANDKESRLPAGLLDIGASKRQIAVISKTDVPDADVAATRQLLRGMGF QEPIFELNSHDPRSVQHLVDYLTELSQKEERAGEKTHHS >gi|283548478|gb|GG730299.1| GENE 137 168657 - 169358 812 233 aa, chain + ## HITS:1 COG:ECs3322 KEGG:ns NR:ns ## COG: ECs3322 COG4766 # Protein_GI_number: 15832576 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Escherichia coli O157:H7 # 1 232 1 232 233 405 87.0 1e-113 MKKLITANDIRAAHARGEQEMSVVLRASIITPEAREVAELLGVTIRECDESASTATATPA AVDEGKTESQRIRETIIAQLPEGQFTESLVAQLMDKVMKEKQSLEQGGMQPSFNSVTGKG GVKVIDGGSVKFGRFDGAQPHCVGLTDLVTDQDGSSMAAGFMQWDNAFFPWTLNYDEIDM ILEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSTVKFLYVAWPANWQSC >gi|283548478|gb|GG730299.1| GENE 138 169368 - 170171 772 267 aa, chain + ## HITS:1 COG:eutT KEGG:ns NR:ns ## COG: eutT COG4812 # Protein_GI_number: 16130384 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization cobalamin adenosyltransferase # Organism: Escherichia coli K12 # 1 265 1 265 267 469 92.0 1e-132 MKDFITEAWLRANHTLSEGAEIHLPADARLTPSARELLESRHLRIKFIDEQGSLFIDDEQ QQPQPVHGLTSSDTHPQASCELCHQPVAKKPDTLTHLTADKMVAKSDPRLGFRAALDSTI ALAVWLQLELAEPWQPWLADIRSRLGNIMRADAMDEPLAAQAIVGLSDEDLHRLSHQPLR YLDHDHLVPEASHGRDCALLNLLRTKVRETETVAAQVFITRSFEVMRPDIMQALNRLSST VYVMMILSVAKHPLTVSQIQQRLGEKP >gi|283548478|gb|GG730299.1| GENE 139 170168 - 171184 994 338 aa, chain + ## HITS:1 COG:eutI KEGG:ns NR:ns ## COG: eutI COG0280 # Protein_GI_number: 16130383 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Escherichia coli K12 # 1 337 1 337 338 553 88.0 1e-157 MIIERARQLAQRAPARVVFPDALDIRVLKAANYLHQHGLAHPILVASPFALRQFALSHRV AMDGIQVIDPQSNVQMREEFALRWLARAGDKTPADALEKLNDPLMFAAAMVSAGKADVCI AGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYLGPSLGFADCSVVPQPTAAQLAD IAIASAQTWQAITGEEPRVAMLSFSSNGSARHPNVANVQQATEIVRERAPQLIVDGELQF DAAFVPDVAAQKAPASPLKGNANVMVFPSLEAGNIGYKIAQRLGGYRAVGPLIQGLAAPL HDLSRGCSVQEIIELALVAAVPRQTDMSRENASHTLVV >gi|283548478|gb|GG730299.1| GENE 140 171221 - 171514 546 97 aa, chain + ## HITS:1 COG:STM2465 KEGG:ns NR:ns ## COG: STM2465 COG4577 # Protein_GI_number: 16765785 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 95 1 95 96 146 98.0 1e-35 MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLVTAMVRGDVAACKAATDAGA AAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNDM >gi|283548478|gb|GG730299.1| GENE 141 171629 - 171916 229 95 aa, chain + ## HITS:1 COG:STM2464 KEGG:ns NR:ns ## COG: STM2464 COG4576 # Protein_GI_number: 16765784 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 95 5 99 99 166 94.0 9e-42 MKLAIVTGQIVCTVRHQGLAHDKLLMVEMIDAQGNPDGQCAVAIDSIGAGTGEWVLLVSG SSARQAHRNESSPVDLCVIGIVDEVVAGGQVIFHK >gi|283548478|gb|GG730299.1| GENE 142 171928 - 173331 828 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148544941|ref|YP_001272311.1| 50S ribosomal protein L29P [Lactobacillus reuteri DSM 20016] # 1 454 1 461 477 323 39 2e-86 MNQQDIEQVVKAVLLKMKDSSQPVSAVQEMGVFASLDDAVAAAKLAQQGLKSVAMRQLAI TALREAGEKHARELAELAVTETGMGRVEDKFAKNVAQARGTPGVECLSPQVLTGDNGLTL IENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVVFAPHPAAKKVSQRAITLLNQAIV AAGGPANLLVTVANPDIETAQRLFKYPGIGLLVVTGGEAVVDAARKHTNKRLIAAGAGNP PVVVDETADLARAAQSVVKGASFDNNIICADEKVLIVVDSVANELMRLMESQHAVKLTAA QAEQLQPVLLKNIDERGKGTVSRDWVGRDAGKIAAAIGLNVPEQTRLLFVETSATHPFAV TELMMPVLPVVRVANVDEAIELAVRLEGGCHHTAAMHSRNIDNMNRMANAIDTSIFVKNG PCIAGLGLGGEGWTTMTITTPTGEGVTSARTFVRLRRCVLVDAFRIV >gi|283548478|gb|GG730299.1| GENE 143 173344 - 174183 1045 279 aa, chain + ## HITS:1 COG:STM2462 KEGG:ns NR:ns ## COG: STM2462 COG4820 # Protein_GI_number: 16765782 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin # Organism: Salmonella typhimurium LT2 # 1 279 1 279 279 528 91.0 1e-150 MAHDEQRWLTPRLQKAATLCNQTPAESDSALWLGVDLGTCDVVSMVVDSDGQPVAVCLDW ADVVRDGIVWDFFGAVTIVRRHLDTLEQQLGCRFTHAATSFPPGTDPRISINVLESAGLE VSHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKQGKVTYSADEATGGHHISLTLAGN RRIQLEEAEQYKRSNGKEIWPVVKPVYEKMAEIVAHHIAGQGVTDLWLAGGSCMQPGVDE LFRKRFPELQVHLPQHSLFMTPLAIANSGKEKAEGIYAS >gi|283548478|gb|GG730299.1| GENE 144 174173 - 175360 1226 395 aa, chain + ## HITS:1 COG:STM2461 KEGG:ns NR:ns ## COG: STM2461 COG1454 # Protein_GI_number: 16765781 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Salmonella typhimurium LT2 # 1 395 1 395 395 644 89.0 0 MQAELQTALFQAFDTLNLQRVKTFSVPPVTLCGLGALSTCGQEAQTRGLTHMFVMVDSFL HQAGLTAALERSLAMKGVAMTLWPCPVGEPCITDVCAAVAQLRESKCDGVVAFGGGSVLD AAKAVALLVTNPTLTLADMTEHSALRPRLPLIAVPTTAGTGSETTNVTVIIDAATGLKKV LAHATLMPDVAILDAALTEGVPAHVTAMTGIDALTHAVEAYSALNATPFTDSLAIGAIAM IGKSLPKAVGYGQDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGQANA MLLPTVMGFNRMVCRERFSHIGRALTNKKSDDRDAINAVSELISEVGQTKRLSDVGATPG HYSAWAHAALEDICIRSNPRTATQAQIIDLYAAAG >gi|283548478|gb|GG730299.1| GENE 145 175480 - 176712 1819 410 aa, chain + ## HITS:1 COG:STM2460 KEGG:ns NR:ns ## COG: STM2460 COG3192 # Protein_GI_number: 16765780 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 1 410 1 408 408 639 94.0 0 MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGSGGQFEEGFMAMGALGL AMVGMTALAPVLAHLLGPVIIPLYEMLGANPSMFAGTLLACDMGGFFLAKELAGGDVAAW LYSGLILGAMMGPTLVFSIPVALGIIEPSDRRYLALGVLAGIVTIPIGCIAGGLVAMYSG VEINGQPVEFTFALILMNMIPVIIVAVLVALGLKFIPEKMINGFQIFAKFLVALITIGLA AAVIKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEVIGSISCVLLGAYPMVLLLTRWFEK PLMSVGNLLKVNNIAAAGMVATLANNIPMFGMMKNMDTRGKVINCAFAVSAAFALGDHLG FAAANMNAMIFPMIVGKLIGGVTAIGVAMLLVPKDENVPAEVETNPEAQS >gi|283548478|gb|GG730299.1| GENE 146 176709 - 178112 1705 467 aa, chain + ## HITS:1 COG:eutA KEGG:ns NR:ns ## COG: eutA COG4819 # Protein_GI_number: 16130376 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition # Organism: Escherichia coli K12 # 1 467 1 467 467 821 91.0 0 MKTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKREISWQSPVFFTPVDKQ GGLKEAELKALILAQYQAAGIKPEAVDSGAIIITGESAKTRNARPAVMALSQSLGDFVVA SAGPHLESVIAGHGAGAQTLSEQKLCRVLNIDIGGGTSNYVLFDAGKVSGSACLNVGGRL LETDGQGRVVYAHQPGQMIVDEVFGPGTDARTLNAAQLVAVARRMATLIVEVIDGTLSPL AQALMQTGLLPAGVKPEVITLSGGVGECYRNQPADPFCFSDIGPLLATALHEHPRLREMN VQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVALPLRNLPVAIPLDETDLVTAWQQALMQ LDLDPQTDAYVLALPGSLPVRYAALLTVIDALLAFVARYPNPHPLLVVAEQDFGKALGML LRPQLQQHPLAVIDEVVVRAGDYIDIGTPLFGGSVVPVTVKSLAFPS >gi|283548478|gb|GG730299.1| GENE 147 178124 - 179485 1719 453 aa, chain + ## HITS:1 COG:STM2458 KEGG:ns NR:ns ## COG: STM2458 COG4303 # Protein_GI_number: 16765778 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, large subunit # Organism: Salmonella typhimurium LT2 # 1 453 1 453 453 921 99.0 0 MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAATSSQERVAAKQVLSEMTVADIR NNPVISYEEDCVTRLIQDDVNETAYNRIKNWSISELREYVLSDETSVDDIAFTRKGLTSE VVAAVAKICSNADLIYGGKKMPVIKKANTTIGLPGTFSCRLQPNDTRDDVQSIAAQIYEG LSFGAGDAVIGVNPVTDDVENLSRVLDTVYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAP GGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANF GADQVTMEARNYGLARHYDPFLVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMG CDCCYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLN LRPSPEFERWLETMGIMANGRLTKRAGDPSLFF >gi|283548478|gb|GG730299.1| GENE 148 179505 - 180395 932 296 aa, chain + ## HITS:1 COG:STM2457 KEGG:ns NR:ns ## COG: STM2457 COG4302 # Protein_GI_number: 16765777 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine ammonia-lyase, small subunit # Organism: Salmonella typhimurium LT2 # 1 296 1 298 298 506 91.0 1e-143 MDQKQIEEIVRSVMASMGQPQPQAPSAEVKCSTAQCAAPTAESCAMDLGSAEAKAWIGVE NPHRAEVLTELRRSTAARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQG LLEVRSEISDKNLYLTRPDLGRRLSAEAIEALKSQCVMNPDVQVIISDGLSTDAITANYE EILPPLLSGLKQAGLKVGTPFFVRYGRVKIEDQIGELLGAKAVILLVGERPGLGQSESLS CYAVYSPSVATTVEADRTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR >gi|283548478|gb|GG730299.1| GENE 149 180405 - 181064 665 219 aa, chain + ## HITS:1 COG:STM2456 KEGG:ns NR:ns ## COG: STM2456 COG4816 # Protein_GI_number: 16765776 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 357 94.0 9e-99 MPALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAM VEVVYGRSLYAGAAHSPSPTSGEVLIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAE DTAFLAYVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGIDAALKSADVQLVTYVPPP SETNYSAAFLTGSQAACKAACNAFADAVLDIARNPIQRA >gi|283548478|gb|GG730299.1| GENE 150 181076 - 181606 456 176 aa, chain + ## HITS:1 COG:eutK KEGG:ns NR:ns ## COG: eutK COG4577 # Protein_GI_number: 16130363 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Escherichia coli K12 # 1 175 3 166 168 236 78.0 2e-62 MINALGLLEVDGMVAAVDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAG SAAAARTGRVISRKEIGRPEDDTQWLIGGFKRQPKKPEQQPEVKTEVKTQKTPDVQITSE SSDQLLTLLASVRQGMTAGEVAAHFGWSLDEARNALEQLFSDGALRKRSSRYRLKN >gi|283548478|gb|GG730299.1| GENE 151 181655 - 182707 1061 350 aa, chain + ## HITS:1 COG:ECs3308 KEGG:ns NR:ns ## COG: ECs3308 COG2207 # Protein_GI_number: 15832562 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli O157:H7 # 1 350 1 350 350 673 94.0 0 MKKNRTANLHHLYHEALPEDVKLTPKVEVDNVHQRRTTDVYEHALTITAWQQIYDQLHPG KFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGAQCLGSAEI ATRPGGTEFELSTPDDYTILGVVISEETIARQANFLHNPERVLHMLRNQSALEVKEQHKA ALWGFVQQALATFSENPENLRQPAVRKVLGDNLLLAMGTMLEEAQPIMTAESISHQSYRR LLSRAREYVLENMSEPLTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE LISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMRQWA >gi|283548478|gb|GG730299.1| GENE 152 182801 - 183700 919 299 aa, chain - ## HITS:1 COG:hemF KEGG:ns NR:ns ## COG: hemF COG0408 # Protein_GI_number: 16130361 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase # Organism: Escherichia coli K12 # 1 299 1 299 299 585 91.0 1e-167 MKPDAQRVKQFLLSLQDDICQRLSAVDGAEFIEDSWQREAGGGGRSRVLRNGGIFEQAGV NFSHVHGDAMPASATAHRPELAGRSFEAMGVSLVVHPLNPYIPTSHANVRFFIAEKPGAD PVWWFGGGFDLTPYYGIEEDAVHWHRTARDLCQPFGEDVYPRYKKWCDDYFFLKHRNEQR GIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVGRRKTMSWGERERNFQLYRRGRY VEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYHPEDGSPEAALSDFIQVRDWV >gi|283548478|gb|GG730299.1| GENE 153 183703 - 184572 1008 289 aa, chain - ## HITS:1 COG:ECs3306 KEGG:ns NR:ns ## COG: ECs3306 COG0860 # Protein_GI_number: 15832560 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli O157:H7 # 1 289 1 289 289 511 95.0 1e-145 MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKEEALKTSNGHSKPQAKKSGAKRVVV LDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNQGIDARLTRSGDTFIPLYDRVEI AHKHGADLFMSIHADGFTNPSAAGASVFALSNRGASSAMAKYLSDRENRADEVAGKKTTD KDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHRLHSRSTEQAAFVVLKSPSIPSVL VETSFITNPEEERLLGTAAFRQKIATAIANGIVSYFHWFDNQKAHSKKR >gi|283548478|gb|GG730299.1| GENE 154 184784 - 185209 589 141 aa, chain + ## HITS:1 COG:ECs3305 KEGG:ns NR:ns ## COG: ECs3305 COG0456 # Protein_GI_number: 15832559 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Escherichia coli O157:H7 # 1 141 38 178 178 281 96.0 3e-76 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKVNHDVSLFLVAEVNGEVVGTVMG GYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQIMVREDNDLVLGMYER LGYEHADVLNLGKRLIEDEEY >gi|283548478|gb|GG730299.1| GENE 155 185196 - 185645 436 149 aa, chain + ## HITS:1 COG:no KEGG:CKO_00354 NR:ns ## KEGG: CKO_00354 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 149 1 149 149 246 89.0 2e-64 MKSTEFHPADYDGHGRLRLPFLFWCVLLLQARTWVLFVIAGSSREQGNTLLNLFYPDHDA FWLGLLPGVPAVLAFLLSGRRLAFPGLWRGLRVLLILAQLVLLCWQPVMWLAGDPVTGIG LALLVADIVALVWLLTNQRLRACFSPEKE >gi|283548478|gb|GG730299.1| GENE 156 185705 - 186280 574 191 aa, chain + ## HITS:1 COG:no KEGG:ECB_02332 NR:ns ## KEGG: ECB_02332 # Name: yfeY # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 191 1 191 191 329 85.0 4e-89 MKSLRLTLCAMPLLLTGCSTLSSVNWSAANPWNWFGSSTQVTEQGVGALTGATPLDEKAI ADALDGDYRLRSGMKTDNGNVVRFYEAMKDDKLAMVINGSQGTISRIDVLDSDISSSAGV KIGTPFSDLYTKAFGNCQKATGDDSASVECKAEGSQHISYIFSGEWSGPEGLMPSDDTLK AWKVSKIIWRR >gi|283548478|gb|GG730299.1| GENE 157 186374 - 187273 1152 299 aa, chain + ## HITS:1 COG:STM2446 KEGG:ns NR:ns ## COG: STM2446 COG2837 # Protein_GI_number: 16765766 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Salmonella typhimurium LT2 # 1 299 1 299 299 602 96.0 1e-172 MSQVQSGILPEHCRAAIWIEANVKGDVEALRAASKTFADKLATFEAKFPDAHLGAVVAFG NSTWRALSGGVGAEELKDFIPYGKGLAPATQYDVLIHILSLRHDVNFSVAQAAMDAFGDC IEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVIKDGVDAGGSYVFVQRWEHNL KQLNRMSIHDQEMMIGRTKEANEEIDGDDRPVTSHLSRVDLKEDGKGLKIVRQSLPYGTA SGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAMLRFTKPVTGGYYFAPSLDRLMAL >gi|283548478|gb|GG730299.1| GENE 158 187473 - 188264 236 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 251 4 238 242 95 31 1e-17 MGKLTGKTALITGASQGIGEGIARTFARHGANLILLDISDEIEKLADELAGRGHRCTAVH ADVRDFASVTEAVKRAKKVEGKIDILVNNAGVCRLGNFLEMSDEDRDFHIDINIKGVWNV TKAVLPEMIDRKDGRIVMMSSVTGDMVADPGETAYALSKAAIIGLTKSLAVEYAQAGIRV NAICPGYVRTPMAENIARQSNPEDPESVLVEMAKAIPMRRLACPLEVGELAAFLASDESS YLTGTQNVIDGGSTLPESVSVGV >gi|283548478|gb|GG730299.1| GENE 159 188425 - 189441 1295 338 aa, chain + ## HITS:1 COG:ECs3296 KEGG:ns NR:ns ## COG: ECs3296 COG4150 # Protein_GI_number: 15832550 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 337 1 337 338 634 95.0 0 MAVNLLKKRTLTLAAMLLLVGQAQATELLNSSYDVSRELFAALNPPFEQQWAKDNGGDKL TIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPADWQTRLPNNSSPFYS TMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKAKT EQFMTQFLQNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGFEVVIPKT NILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQAQTIITDFYYRVNNPQVMDKLHDKF PQTELFRVEDKFGSWPEVMKTHFVSGGELDKLLAAGRK >gi|283548478|gb|GG730299.1| GENE 160 189442 - 190275 1105 277 aa, chain + ## HITS:1 COG:cysU KEGG:ns NR:ns ## COG: cysU COG0555 # Protein_GI_number: 16130349 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type sulfate transport system, permease component # Organism: Escherichia coli K12 # 1 277 1 277 277 434 98.0 1e-121 MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWDVITNPQVVAAY KVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS VNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT RWQSFRKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF DYPAASAIASVILGASLLLLFSINTLQSRFGRRVVGH >gi|283548478|gb|GG730299.1| GENE 161 190275 - 191150 1117 291 aa, chain + ## HITS:1 COG:STM2442 KEGG:ns NR:ns ## COG: STM2442 COG4208 # Protein_GI_number: 16765762 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 291 1 291 291 525 96.0 1e-149 MAEITQLKRYDAPRINWGKWFLIGTGMLVSAFILLVPMIYIFVQAFSKGLMPVLQNLADP DMLHAIWLTVLIALIAVPVNLVFGVLLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV YLLFYGSNGPLGGWLDEHNLQIMFAWPGMVLVTVFVTCPFVVRELVPVMLSQGSNEDEAA VLLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIE LLQQDYNTIGSFTAAALLTLMAIITLFLKSMLQWRLENQEKRAQQEENHEH >gi|283548478|gb|GG730299.1| GENE 162 191140 - 192237 1392 365 aa, chain + ## HITS:1 COG:cysA KEGG:ns NR:ns ## COG: cysA COG1118 # Protein_GI_number: 16130348 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate/molybdate transport systems, ATPase component # Organism: Escherichia coli K12 # 1 365 1 365 365 696 95.0 0 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQSSGHIR FHGTDVSRLHARERKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKL LEMVQLAHLADRFPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR QLHEELKFTSVFVTHDQEEATEVADRVVVMSQGQIEQADAPDQVWREPATRFVLEFMGEV NRLQGTVRGSQFHVGAHRWPLGYTPGYQGPVDLFLRPWEVDVSRRTSLDSPLPVQVLEAS PKGHYTQLVVQPLGWYNEPLTVVMQGDDSPSRGERLFVGLQKARLYNGDQRVETREEELA LAQSA >gi|283548478|gb|GG730299.1| GENE 163 192346 - 193266 553 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 1 295 1 304 308 217 39 2e-54 VKIVNTLEHTIGNTPLVKLQRMGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGE IKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQ GMEGARDLALEMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTSGRITHFVSSMGTTG TITGVSRFLREQEKPVIIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQTDA ENTMRELAVSEGIFCGVSSGGAVAGAIRVARATAGAVVVAIICDRGDRYLSTGVFGEEHF SQGLGI >gi|283548478|gb|GG730299.1| GENE 164 193356 - 194072 681 238 aa, chain - ## HITS:1 COG:STM2437 KEGG:ns NR:ns ## COG: STM2437 COG0518 # Protein_GI_number: 16765757 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Salmonella typhimurium LT2 # 1 232 1 232 239 420 83.0 1e-117 MRVHFVIHESFESAGAYLPWAETRGYPITWSRVYAGEPVPANADGFDMLVVFGGPQSPRT TLAECPYFDSQAEQHLINQAIAARKIVVGICLGSQLIGEALGAKVCQSPEKEIGHYPITL TESGQQHPLLRHFGSPLTVGHWHNDMPGLTDQAIILAASEGCPRQIVQYGNFVYGFQCHM EFTADAIEGLIQHSEQELAEAKGKPFIRPVEEMRAWDYQQMNEKLWQFLDKLVQKRND >gi|283548478|gb|GG730299.1| GENE 165 194086 - 195378 1066 430 aa, chain - ## HITS:1 COG:STM2436 KEGG:ns NR:ns ## COG: STM2436 COG1167 # Protein_GI_number: 16765756 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 1 430 1 430 430 647 76.0 0 MIDGKTANEIFASIRQHVTTGTLAAGETLPPVRELATALNVNRNTVAAAYKRLVTSGLAQ SQGRNGTVIKGISAPVALEGGNPDTPLTDLSGGNPAPVRLPDLSRYFAQINKNPRLYGDA AVSPGLKAWATQWMQDAMPGKGEIDITSGAIDAIERLLCAHLLPGDSVVVEDPCFLSSIN MLRYAGFSACPVNVDHKGMLPDQLELALQKGARAVILTPRAHNPTGCSLSASRAAQLQEI LARYPQVLAIVDDHFALLSSCRWYPVIAKETAHWAVVRSMSKTLGPDLRLAIVASDPVTS GKLRLRLNSGSQWVSHLLQDLACACLSDATYQHTLAQTQRFYAAQQQKLNSALRQHGIEL PVGDGLNLWLPLADHSQAIAFALAKSGWLVREGEVFGVNTPAHGLRITLSTLEDSDINQL AADIHQALKR >gi|283548478|gb|GG730299.1| GENE 166 195461 - 196327 975 288 aa, chain + ## HITS:1 COG:STM2435 KEGG:ns NR:ns ## COG: STM2435 COG2240 # Protein_GI_number: 16765755 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Salmonella typhimurium LT2 # 1 288 1 288 288 474 84.0 1e-134 MEQGNDIQSVLFDDKHRALQTDIVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFS NTPHYETFYGGIIPPDWFSGYLRALNERDALRELKAVTTGYMGSAEQIALLAQWLETVRA THPAVCILVDPVIGDTDSGMYVKAEIPQAYRQHLLPLAQGLTPNVFELQMLSGKPCRTLD EAIAAAKSLLTDTLQWVVITSAPGDTEEVINVAVVTAETVEVFAHPRVKTDLKGTGDLFC AELVSGIVLGNALTTAAYDAAQRVLDVMSWTHQCGCDELILPPAGEAR >gi|283548478|gb|GG730299.1| GENE 167 196324 - 196563 166 79 aa, chain + ## HITS:1 COG:no KEGG:SARI_00452 NR:ns ## KEGG: SARI_00452 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 79 1 79 79 142 89.0 5e-33 MKSYRLVVRQHGRLVGHFDTSGTEALEDICVARAMFGIAGGYDCELLVADSERRMLESGP EGMKILMREPCFRPVTSQI >gi|283548478|gb|GG730299.1| GENE 168 196703 - 197212 738 169 aa, chain - ## HITS:1 COG:STM2433 KEGG:ns NR:ns ## COG: STM2433 COG2190 # Protein_GI_number: 16765753 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Salmonella typhimurium LT2 # 1 169 1 169 169 286 100.0 2e-77 MGLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKM VAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPV IEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK >gi|283548478|gb|GG730299.1| GENE 169 197253 - 198980 2026 575 aa, chain - ## HITS:1 COG:STM2432 KEGG:ns NR:ns ## COG: STM2432 COG1080 # Protein_GI_number: 16765752 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Salmonella typhimurium LT2 # 1 575 1 575 575 1029 98.0 0 MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFLSGRAKASAQLEAIKTK AGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQATALEELDD EYLKERAADVRDIGKRLLRNILGLAIIDLSAIQEEVILVAADLTPSETAQLNLNKVLGFI TDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNDVIEQLR AVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFL FMDRESLPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAV RIAMDRKEILRDQVRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAF DESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPS VLTLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNT NFEDAKVLAEQALAQPTTDELMTLVNKFIEEKTIC >gi|283548478|gb|GG730299.1| GENE 170 199026 - 199283 441 85 aa, chain - ## HITS:1 COG:ECs3287 KEGG:ns NR:ns ## COG: ECs3287 COG1925 # Protein_GI_number: 15832541 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Escherichia coli O157:H7 # 1 85 1 85 85 128 98.0 3e-30 MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTV VTLSAEGEDEQKAVEHLVKLMAELE >gi|283548478|gb|GG730299.1| GENE 171 199667 - 200638 708 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 4 312 3 304 308 277 50 2e-72 MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK PGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM KGAIQKAEEIVASDPEKFLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGG TLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEELKPGPHKIQGIGAGFIPGNLD LKLIDKVVAITNDEAISTARRLMEEEGILAGISSGAAVAAALKLQEDETFTNKNIVVILP SSGERYLSTALFADLFTEKELQQ >gi|283548478|gb|GG730299.1| GENE 172 200802 - 201683 839 293 aa, chain - ## HITS:1 COG:STM2429 KEGG:ns NR:ns ## COG: STM2429 COG2981 # Protein_GI_number: 16765749 # Func_class: E Amino acid transport and metabolism # Function: Uncharacterized protein involved in cysteine biosynthesis # Organism: Salmonella typhimurium LT2 # 41 293 1 253 253 436 91.0 1e-122 MNKIVLFAVFSNISEQLNAQQPGKIRKVYQSLYNKEYVLTMVSSSAVVPRSGLYYFSQGW KLITQPGIRRFVILPLLVNILLMGGAFWWLFAQLDSWIPALMSHVPDWLQWLSYLLWPIV TISVLLVFGYLFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGVLGIMKDVPRIMKREW QKLAWYLPRAFVLLILYFIPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRV ALRTRKVTNMQFGALTSLFTMIPVLNLFIMPVAVCGATAMWVDCYRAKHALWK >gi|283548478|gb|GG730299.1| GENE 173 201797 - 202801 864 334 aa, chain + ## HITS:1 COG:ECs3284 KEGG:ns NR:ns ## COG: ECs3284 COG3115 # Protein_GI_number: 15832538 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Escherichia coli O157:H7 # 1 334 2 332 332 366 79.0 1e-101 MQDLRLILIIVGAIAIIALLVHGFWTSRKERSSIFRDRPLKRMKSKRDDEDSFDDNVEED EGVGEVRVHRVNHAPGNAQEHGVPPQSPQHQYQPPYASAQPRQPAQQPAQAPVPPPHVQQ QPVPPQQPVQHQPVQQQPVQQPMQHQPVAPQVQQPVQQAPQPAPQTFQPAEPVVEHQPQP EPVVEEAPVAEKPQRKEAVIIMNVAAHHGSELSGEVLLNSIQQAGFKFGDMNIFHRHLSP DGSGPSLFSLANMVNPGTFDPEMTGDFSTPGVTIFMQVPSYGDELQNFKLMLQSAQHIAD EVGGVVLDDQRRMMTPQKLREYQDRIREVKESRA >gi|283548478|gb|GG730299.1| GENE 174 202873 - 204888 2294 671 aa, chain + ## HITS:1 COG:lig KEGG:ns NR:ns ## COG: lig COG0272 # Protein_GI_number: 16130337 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1 671 1 671 671 1240 93.0 0 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELITPDSPTQ RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVFLPQAG FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGALPDTHL GRLLQFKAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPQHCPVCNSDVERVEG EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA ASIEELQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAG KTVVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI DEAEMIRLLGA >gi|283548478|gb|GG730299.1| GENE 175 204890 - 205108 286 72 aa, chain + ## HITS:1 COG:Z3676 KEGG:ns NR:ns ## COG: Z3676 COG3530 # Protein_GI_number: 15802943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 72 1 72 72 120 94.0 6e-28 MEKEQLVEIANTVMPFGKYKGRRLIDVPEEYLLWFARKDEFPPGKLGELMQITLLIKTEG LTQLVQPLKRPL >gi|283548478|gb|GG730299.1| GENE 176 205105 - 206103 943 332 aa, chain - ## HITS:1 COG:STM2425 KEGG:ns NR:ns ## COG: STM2425 COG0385 # Protein_GI_number: 16765745 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Salmonella typhimurium LT2 # 1 332 1 332 332 545 92.0 1e-155 MKLFRILDPFTITLITVVLLASFFPAEGGFVPFFEGLTTAAIALLFFMHGAKLSREAIIA GGSHWRLHLWVMCSTFVVFPVLGVLFAWWAPVNVDPMLYTGFLYLCILPATVQSAIAFTS LAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNMHGAEGSLEQVGKIMLQLLLPFVLGHL SRPWIGNWVSRHKKWIAKTDQSSILLVVYSAFSEAVVNGIWHKVGIGSLLFICVVSIVLL AIVISINVFVARKCGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFH QIQLMVCAVLARRYKQQTDALQAQQKSSAAKA >gi|283548478|gb|GG730299.1| GENE 177 206193 - 207119 980 308 aa, chain + ## HITS:1 COG:STM2424 KEGG:ns NR:ns ## COG: STM2424 COG0583 # Protein_GI_number: 16765744 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 308 1 308 308 524 90.0 1e-148 MNYSLRQLRIFVTVAQAKSFSRAGDIIGLSQSAVSHSVKELEGQTGVRLLDRTTREVVLT EAGHQLAARLERILDELHSTLREAGQVGTQLTGTVRVAASQTISAHLIPQCIAQSNQLYP AIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGAVTDLQCEAVLSEPFLLLCRQDHPLAQR EWVNWQDLYHERLVLQDYASGSRPLIDAALAHFSIDANIVQEIGHPATLFPMVEAGIGIS VLPALALPLPQGSHLQVKRLTPVVERQLMLARRKNRSLSTAAQALWDVVRMQASELTAGR ASDPLYQI >gi|283548478|gb|GG730299.1| GENE 178 207303 - 208136 918 277 aa, chain + ## HITS:1 COG:STM2422 KEGG:ns NR:ns ## COG: STM2422 COG0005 # Protein_GI_number: 16765742 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Salmonella typhimurium LT2 # 1 277 1 277 277 507 90.0 1e-144 MSHSLFSQNPWYSADIIRGYKPDFTPRVAFILGSGLGALADQIEDAVAISYEKLPGFPVS TVHGHAGELVLGNLAGVPVACMKGRGHFYEGRGMTVMTDAIRTLKLLGCELLFCTNAAGS LRPEVGPGSLVALSDHINTMPGTPMVGLNDERFGERFFSLANAYDADYRALLQTVAAEEG FPLSEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCGLKVVAVAAITNL AEGLGDVKLSHAQTLSAAELSRQNFINLICGFLRKLA >gi|283548478|gb|GG730299.1| GENE 179 208194 - 209450 1372 418 aa, chain + ## HITS:1 COG:STM2421 KEGG:ns NR:ns ## COG: STM2421 COG0477 # Protein_GI_number: 16765741 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 418 1 418 418 677 94.0 0 MGIASRLKLMSFLQYFIWGSWLVTLGSYMINTLDFSGANVGMVYSSKGLAAIIMPGIMGI IADKWLRAERAYMLCHLVCAGVLLYATTVTDPETMFWVMLVDAMAYMPTIALSNSVSYSC LAQSGQDPVTAFPPIRVFGTIGFIVAMWTVSLMGLELSSAQLYIASGASLLLALYALTLP KIPVAGMKANTTLASKLGLDAFVLFKNPRMAIFFLFAMMLGAVLQITNVFGNPFLHDFAR NPDFADSFVVKYPSILLSVSQMAEVGFILTIPFFLKRFGIKTVMLMSMLAWTLRFGFFAF GDPSPVGFVLLLMSMIVYGCAFDFFNISGSVFVEQEVSSNIRASAQGLFMTMVNGVGAWV GSILSGMAVDYFSVDGVKDWQTIWLVFAAYALALAVIFALFFKYKHEPEKLAQKSLAH >gi|283548478|gb|GG730299.1| GENE 180 209552 - 210436 479 294 aa, chain + ## HITS:1 COG:STM2420 KEGG:ns NR:ns ## COG: STM2420 COG0583 # Protein_GI_number: 16765740 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 294 1 294 294 493 86.0 1e-139 MERTHRIDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSTHIKELEQQLGTLLFIRHSRS VALTHAGKILMEESRRLLSSANQALARVEQIGRGEAGRIELGVIGTAMWGKMRPVMRRFL KDNPNVEVLFRENMPAMQMTMLERRELDAGIWRMATEPSPGFTSLRLHESSFLVAMPEEH PLAELAAIPLAALRNEYFVTMPSIHTDWAFLQRVCLSAGFSPMIIREVKEPQTVLAMISM GIGITLIADSYAQMSWPGVVFRPLQERIPADLYIVYDQQQATPALENLVAALTV >gi|283548478|gb|GG730299.1| GENE 181 211353 - 212768 1837 471 aa, chain + ## HITS:1 COG:STM2415 KEGG:ns NR:ns ## COG: STM2415 COG0008 # Protein_GI_number: 16765739 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Salmonella typhimurium LT2 # 1 471 1 471 471 952 95.0 0 MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDG MNWLNLEWDEGPYFQTKRFDRYNAVIDEMLEAGTAYKCYCSKERLDVLREEQMAKGEKPR YDGRCRHGHEHHAADEPCVVRFANPQDGSVIFDDQIRGPIEFSNQELDDLIIRRTDGSPT YNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALNAPVPVYAHVSMINGDDGKKLSK RHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEIFTREEMIKLFSLGAVSKSASAFNT EKLQWLNHHYINALAPEYVATHLQWHIEQENIDTRVGPQLSELVKLLGERCKTLKEMAQS CRYFYEDFAEFDADAAKKHLRPVARQPLEVVRDKLAAISEWTAENVHHAIQATADELEVG MGKVGMPLRVAVTGAGQSPALDVTVHAIGKSRSVERINKALAFIAERESQQ >gi|283548478|gb|GG730299.1| GENE 182 212825 - 213217 266 130 aa, chain - ## HITS:1 COG:no KEGG:SARI_00470 NR:ns ## KEGG: SARI_00470 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 130 1 130 130 207 77.0 1e-52 MKKLRSKMTTEELAECLGVAKQTVNRWIREQNWTTEKFPGVKGGRARLIHIDSGVRTFLL NVPAFRKVPEIYQAEEPLAEYTHVARSHACRQIISALDNMSPTEQEKLAMYISREGIRTF LTRLGIDESE >gi|283548478|gb|GG730299.1| GENE 183 213219 - 213581 357 120 aa, chain - ## HITS:1 COG:no KEGG:CKO_00398 NR:ns ## KEGG: CKO_00398 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 120 1 120 120 187 86.0 1e-46 MFKERMTPEELANLTGYSRQTINKWVRKEGWATSPKPGVQGGKARLVHVTEQVREYIRSA ERSAEGLSDNLSLSGDTSIEALLIRLAKEMTPSEQKMFTSLILREGITGLLQRLGIRENK >gi|283548478|gb|GG730299.1| GENE 184 214141 - 215343 1606 400 aa, chain - ## HITS:1 COG:nupC KEGG:ns NR:ns ## COG: nupC COG1972 # Protein_GI_number: 16130325 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Escherichia coli K12 # 1 400 1 400 400 644 97.0 0 MDRVLHFVLALAVVAVLALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVRGF SEMFEKLLGFANEGTNFVFGSMNDKGLAFFFLKVLCPIVFISALIGILQHIRVLPVVIRA IGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKMSRNRMYTMAATAMSTVSMS IVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYTVDASEENIQMSNLHEGQSFFEMLG EYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPVAWVMG VPSSEALQVGSIMATKLVSNEFVAMMDLQKIAATLSPRAEGILSVFLVSFANFSSIGIIA GAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL >gi|283548478|gb|GG730299.1| GENE 185 215688 - 216926 1385 412 aa, chain + ## HITS:1 COG:STM2408 KEGG:ns NR:ns ## COG: STM2408 COG1914 # Protein_GI_number: 16765734 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Salmonella typhimurium LT2 # 1 412 1 412 413 660 92.0 0 MTNDRVESSSGRAARKLKLALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWAN LMAMLIQVLSAKLGIATGKNLAEQIRDRYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGF KLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELVFSQPNFA QLSKGMIVPSLPNSEAVFLAAGVLGATIMPHVIYLHSSLTQHLHGGTRQQRYTATKWDVA IAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDQAYLTLEPLLSHAAATVFGLSLVAAGL SSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMMPSFIVILMGLDPTRILVMSQVLLSFGI ALALVPLLIFTSNGTLMGDLVNTAWVKYIGWMIVVLVVALNIWLLVGTALDL >gi|283548478|gb|GG730299.1| GENE 186 216959 - 217285 278 108 aa, chain - ## HITS:1 COG:no KEGG:EFER_0778 NR:ns ## KEGG: EFER_0778 # Name: ypeC # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 108 1 108 108 153 89.0 3e-36 MFRSLILAAVLLAFTPLAANAGEITLLPSIKLQIGDRDNYGNYWDGGRWRDRDYWHHNYE WRKNRWWRHDNGYHRGWDKRNAYERGYREGWNDRDDHRGRGRGHKHHH >gi|283548478|gb|GG730299.1| GENE 187 217423 - 218412 989 329 aa, chain - ## HITS:1 COG:STM2406 KEGG:ns NR:ns ## COG: STM2406 COG0667 # Protein_GI_number: 16765732 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 1 328 1 328 332 612 88.0 1e-175 MVYQADENRYQTMEYRRCGHSGLKLPIVSLGLWHNFGDVTQVENSRALLRRAFDLGINHF DLANNYGPPPGSAERNFGRILQEDFLPWRDELIISTKAGYTMWEGPYGDWGSRKYLIASL DQSLKRLGLEYVDIFYHHRPDPETPLRETMQALDHIVRQGKALYVGLSNYPADLAQQAIE ILDDLGTPCLIHQPKYSLFERWVENGLLSLLQEKGVGSIAFSPLAGGQLTDRYLNGIPAD SRAASSSRFLNPDQITAEKLQKVRLLNALAERRGQKLSQMALAWVLRQDKVTSVLIGASK PAQIEDAVGMLANRHFTAEECAEIDAILR >gi|283548478|gb|GG730299.1| GENE 188 218596 - 220248 1117 550 aa, chain + ## HITS:1 COG:STM2405 KEGG:ns NR:ns ## COG: STM2405 COG3961 # Protein_GI_number: 16765731 # Func_class: G Carbohydrate transport and metabolism; H Coenzyme transport and metabolism; R General function prediction only # Function: Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes # Organism: Salmonella typhimurium LT2 # 1 550 1 550 550 899 79.0 0 MQTPYSVADYLLDRLADCGVDHLFGVPGDYNLQFLDHVIEHPSVRWVGCANELNAAYAAD GYARVAGAGALLTTFGVGELSAINGIAGSYAEYVPVLHIVGAPCCGAQRRGELMHHTLGD GDFQHFYRMQQAVTTASAVLDEQNACYEIDRVLRAMLTERRPGYLMLPADVAKQPATPPN DPLIVSQSEPASSVAAAFRYHARERLLDSPRVALLADFLALRFGLQPVLQRWMAETPMAH ATLLMGKGLFDERHPAFVGTYSAGASSDYVRQAIEEADTIMCVGTQFVDTLTAGFTQRLP PERTIEVQPHASRVGSQWFNVPMEQAVTTLRELCLEMSFSLPPERPPVERIQIEKGLLTQ ENFWHTVQHYLAPDDIILVDQGTAAFGAAALSLPSGAEVLVQPLWGSIGYTLPAAFGAQT ACPDRRVILIIGDGAAQLTIQELGSMLRDGQSPVILLLNNDGYTVERAIHGANQRYNDIA GWNWTQVPQALSRECQAECWRVKQAVQLEEVLARLSHPQRLSLIEVVLPKADLPELLRTV TRALESRNGG >gi|283548478|gb|GG730299.1| GENE 189 220249 - 221484 1104 411 aa, chain - ## HITS:1 COG:STM2404 KEGG:ns NR:ns ## COG: STM2404 COG0038 # Protein_GI_number: 16765730 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Salmonella typhimurium LT2 # 1 410 1 410 411 549 85.0 1e-156 MLHPRARTMLLLSTPALIIGVASSLVLIVVMKVAFVLQQFLWERLPISIGIAQDSPLWII GMLTLTGLMVGLVIRYSRGHAGPDPACEPLIGMPVAASALPGLLAALILGLAGGVSLGPE HPIMTVNIALAVAIGSRIFPRIAKLDWTILASAGTIGALFGTPVAAALVFSQTLNSSNDV PLWDRLFAPLMAAAAGSLTTSLFFHPHFSLPIAHYTQMHLIDILSGAVVAAIAIAAGMVA VWCLPRLHHLMHRLQHPVLILGAGGFILGILGVFGGPLTLFKGLDEMQQMAFSQTLGTSD YLMLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVEAVPAAITVSCAILGLV LVVTRDAWLSLFMAAVVVPDTTLLPLLCVVMLPAWLLLAGKPMMIASRPEE >gi|283548478|gb|GG730299.1| GENE 190 221689 - 222654 1200 321 aa, chain + ## HITS:1 COG:STM2403 KEGG:ns NR:ns ## COG: STM2403 COG0837 # Protein_GI_number: 16765729 # Func_class: G Carbohydrate transport and metabolism # Function: Glucokinase # Organism: Salmonella typhimurium LT2 # 1 321 1 321 321 628 95.0 1e-180 MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVVRVYLDEHSVSVEDGC IAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFG GAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEGIILEVLRAE IGHVSAERVLSGPGLVNLYRAIVKSDGRLPENLQPKDITARALEDSCIDCRRALSLFCVI MGRFGGDLALTLGTFGGVYIAGGIVPRFLEFFKASGFRGGFEDKGRFKAYVQDIPVYLIV HDNPGLLGSGAHLRQTLGYIL >gi|283548478|gb|GG730299.1| GENE 191 222846 - 223172 448 108 aa, chain + ## HITS:1 COG:ECs3267 KEGG:ns NR:ns ## COG: ECs3267 COG1445 # Protein_GI_number: 15832521 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Escherichia coli O157:H7 # 1 108 1 108 108 165 96.0 2e-41 MSKKLIAVCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATL IIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMVAAEQQ >gi|283548478|gb|GG730299.1| GENE 192 223193 - 224440 1412 415 aa, chain + ## HITS:1 COG:ECs3266 KEGG:ns NR:ns ## COG: ECs3266 COG1299 # Protein_GI_number: 15832520 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Escherichia coli O157:H7 # 1 415 1 415 415 676 93.0 0 MAIKKRSATVVPGASGATAAIKNPPASRNSFWGELPQHVMSGISRMVPTLIMGGVILAFS QLIAYSWLDIPADTGIMDALNSGKFTGFNLSLLKFAWLSQSFGGVLFGFAIPMFAAFVAN SIGGKLAFPAGFIGGLMSTQPTQILNFDPSTLQWATTAPVPSTFIGALIISIVAGYLVKW MNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTLLTAAGEKGTL MYAMGISAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATLLDRR LTGKRLFSAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTAAVWLG AVQWFPESAIWAWPLVTNLGIYMGGILLGAVITALMVVFLRHLMYRKGKLLIESL >gi|283548478|gb|GG730299.1| GENE 193 224458 - 225543 900 361 aa, chain + ## HITS:1 COG:ypdF KEGG:ns NR:ns ## COG: ypdF COG0006 # Protein_GI_number: 16130317 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Escherichia coli K12 # 1 361 1 361 361 547 75.0 1e-155 MSLLASLRDWLTAQHLDAMLLSSRQNKQPHMGISSSSGYVFISRESAHILVDARYYTDVA TRTQGYQIHLLDGTQTLYSRVNQIIADEKLQTVGFEGEHVSWETAQGWSGKLHGRLVSAV PDVLRQVKTAQEIACIREACRIADLSAEHIRRFIQPGLSEREIAAELEWYMRMLGADKAS FDTIVASGWRGALPHGKASDKRVAAGEFITLDFGAQYQGYCSDMTRTFRIPDTSQPAEES ALFSIYQVVLEAQLAAVAAIRPGRRCNEVDAAARQVITQAGYGDKFGHNTGHAIGIEVHE NPRFSPTDATPLAAGMLLTVEPGIYLPGQGGVRIEDVVLVTPDGGEVLYSMAKTLLHTGD A >gi|283548478|gb|GG730299.1| GENE 194 225543 - 226583 594 346 aa, chain + ## HITS:1 COG:ypdE KEGG:ns NR:ns ## COG: ypdE COG1363 # Protein_GI_number: 16130316 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1 345 1 345 345 619 88.0 1e-177 MDLSLLKALSEADAIASSEQEVRQILLEEADRLHKEVRFDGLGSVLIRLNESTGPKVMIC AHMDEVGFIVRSISSEGAIDVLSVGNVRMAARQLQPVRITTREESKIPGLLDGDRNGNEV NALRVDIGARSYDEVLQAGVRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLIALLRE WHDAILPCEVWLVASSSEEVGLRGGQTAARAVTPDVAIVLDTACWAKNFDYGAANHRQLG KGPMLVLSDKSLIAPPKLTAWIESVATDAGIPLQLDMFSNGGTDGGAVHVSGTGIPTVVM GPATRHGHCAASIADCRDIIQTQQLLSAVISHLTCETVAHLTDFRC >gi|283548478|gb|GG730299.1| GENE 195 226607 - 229102 2389 831 aa, chain + ## HITS:1 COG:ECs3263_2 KEGG:ns NR:ns ## COG: ECs3263_2 COG1080 # Protein_GI_number: 15832517 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli O157:H7 # 98 683 1 586 586 999 87.0 0 MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVMFFNHRQNAKADAKSSLALIGTATLFN DSCSLTITGHDEEQARRVLEEYLQHRFIDSDSVQPGAAELAAHPLPRSLIRLNPDLLYGT VLAGGVGAGQLTLWQSDNLESYRAIAASAEDNARLEHSLATLAELLNQQLRERDGESKTI LSAHLSLIQDDEFAGNIRRLMLEQHLGLGAAIITNMEQVCGKLSASGSDYLRERVSDIRD ISEQLLHITWPEKRPRNALVLEKPTILVAEDLTPSQFLSLDLQHLSGMILEKTGRTSHTL ILARASAIPVLSGLPLAAISRYAGQPAVLDARCGVLAINPDDAVRGYYAIAQKLADECQR RQALDAAQPALTKDNQRIDVAANIGTALEAPGAFANGAEGIGLFRTEMLFMDRDSAPDEQ EQFEAYQQVLLAAGDKPVIFRTMDIGGDKNIRYLNIPQEENPFLGYRAVRIYPEFAGLFR TQLRAILRAATFGNAQLMIPMVHSLDQILWVKSELQKALVELKAEGLRHAPTISLGIMVE VPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVRV AHERGKWVGICGELGGEGRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLDSQACRELATQ ACECRSAQEIEDLLNQFAPQKDVRPLLALENIFVGEPLTNKEQVIQFLCGNLGVNGRTEH PFELEEDIWQREEIVTTAVGFGVAIPHTKSQWIAHSSISIARLAQPIDWQSEMGDVELVI MLTLGADQGINHVKVFSQLARKLVNKQFRQSLFAATDAESILALLEAELTF >gi|283548478|gb|GG730299.1| GENE 196 229181 - 229369 119 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283832215|ref|ZP_06351956.1| ## NR: gi|283832215|ref|ZP_06351956.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 62 1 62 62 89 100.0 1e-16 MKNRRALSLMCFQMLESGADRRTVKRALTARRVKGRQAVVLLCKQEMTLLRAGKLPIQNT AD >gi|283548478|gb|GG730299.1| GENE 197 229471 - 230334 528 287 aa, chain - ## HITS:1 COG:ypdC KEGG:ns NR:ns ## COG: ypdC COG2207 # Protein_GI_number: 16130314 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 284 1 284 285 475 80.0 1e-134 MKEPGLPADQQFFADLLSGLVLNPQRLGRVWFATQRATLPTGSLCIDLPRLDIVLRGEYS NLLEKQQHSLAEGDMLFIPAKAANLPGSDKPVMLLSLIFSAAWLGLSFYDNRTASLLRPV RRIELPHPQRGEGEAMLTALTHLSRSPQAQDIIQPLVLSLLHLCRSVVNTRPDIARPRSE FLYHSICNWVQDNYAQPLSRENVAQFFNISPNHLSKIFTQHGTMGFVEYVRWVRMAKARI ILQKYHLSISEVAQRCGYQDSDYFCRLFRRQFGLTPGEYGARFQSAR >gi|283548478|gb|GG730299.1| GENE 198 230350 - 231084 696 244 aa, chain - ## HITS:1 COG:ECs3261 KEGG:ns NR:ns ## COG: ECs3261 COG3279 # Protein_GI_number: 15832515 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1 244 1 244 244 463 93.0 1e-130 MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKYLQHNRVDAIFLDINIPSLD GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIVGMLQKLEAAWQ QQQTGTSPVSPAIRGNDTINLIKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNI TEFCSKLPASHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLEFEIPVSRSKVKEFRQ LMHL >gi|283548478|gb|GG730299.1| GENE 199 231099 - 232778 1507 559 aa, chain - ## HITS:1 COG:ECs3260 KEGG:ns NR:ns ## COG: ECs3260 COG3275 # Protein_GI_number: 15832514 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Escherichia coli O157:H7 # 1 559 7 565 565 1063 93.0 0 MLLAVFDRAALMLFCLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSMFALFSTWSGVPV EGSLVNVRIIAVMSGGILFGPWVGIITGLIAGTHRYLIDIGGVTALPCFITSILAGCIAG WINRKIPKAQHWRAGILGGMLCESLTMILVVAWAPTTALGLDIVSKIGIPMILGSVCIGF IVMLVQSVEGEKEASAAKQAKLALDIANKTLPLFRQVNSESLRQVCEIIRHDIHADAVAI TNTQHVLAYVGVGELNYRDNDDFVSPTTRQAINYGKIIIKNNDEAHRTPEIHSMLVIPLW EKGVVTGTLKIYYCHAHQITSSLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQS KINPHFLFNALNAISSSVRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDY IAIEQARFGDKLTVIYDIDEEVSCYIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECG NRVRIAVRDTGHGIDPKVIERVESNEMPGNKIGLLNVHHRVKLLYGEGLLIRRLEPGTEI AFYVPNQHSPAAAPATLLL >gi|283548478|gb|GG730299.1| GENE 200 233181 - 234419 1263 412 aa, chain + ## HITS:1 COG:yfdZ KEGG:ns NR:ns ## COG: yfdZ COG0436 # Protein_GI_number: 16130311 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 412 1 412 412 822 97.0 0 MADSRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT VAQRPDAHGYSTSRGIPRLRRAISRWYQERYDVEIDPESEAIVTIGSKEGLAHLMLATLD HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF TLSKSYNMAGWRIGFMVGNKTLVNALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEQYAAMGSLEFAKKLLNEAKVCVSP GIGFGDYGDTHVRFALIENRDRTRQAIRGIKAMFRADGLLPASAKSAIENTD >gi|283548478|gb|GG730299.1| GENE 201 234916 - 235515 410 199 aa, chain + ## HITS:1 COG:no KEGG:Pput_2752 NR:ns ## KEGG: Pput_2752 # Name: not_defined # Def: hypothetical protein # Organism: P.putida_F1 # Pathway: not_defined # 110 196 20 108 193 103 56.0 3e-21 MTKIMMLALVLTPLTSMAASPLAFNFSCASIGGVNSDGKGNVWIDGSKATVKSFNENYWE AKSGKNTLSISRKDDGNPEVSWTGPDRKHGICQPEDNINYAPGNKSTHSGPSFSCSAVEK GSIEEVICQSPSLSAMDVTLNGAYKQALVKSKNNPTLKAEQRGWVKGRNECWKEQDKPAC IARNYNERMTELQNKWGVK >gi|283548478|gb|GG730299.1| GENE 202 235557 - 236477 787 306 aa, chain - ## HITS:1 COG:ECs3258 KEGG:ns NR:ns ## COG: ECs3258 COG1560 # Protein_GI_number: 15832512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1 306 23 328 328 574 89.0 1e-164 MFPQCKFSRAFLHPRYWLTWFGVGVLWLLVQLPYPLLCFLGTRTGTLARPFLKRRESIAR KNLELCFPNLSQEERDKLVDENFRSLGMGLLETGMAWFWPDRRVRKWFDVEGLDNLQRAQ IEGRGVMVVGVHFMSLELGGRVMGLCQPTMATYRPHNNKLMEWIQTRGRMRSNKAMIGRN NLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVKDVATTNGTYVLSRLSGAAMLTVT MVRKADNSGYRLFITPQMEGYPADESQAAAYMNKIIEKEIMRAPEQYLWIHRRFKTRPMG EASLYI >gi|283548478|gb|GG730299.1| GENE 203 236918 - 237160 207 80 aa, chain + ## HITS:1 COG:no KEGG:SeAg_B2541 NR:ns ## KEGG: SeAg_B2541 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Agona # Pathway: not_defined # 1 80 1 80 80 87 66.0 2e-16 MLYFWTFLALSILSVSCYIWQVMGAAASISAFIGMVILTALIYVFTMRLTNGNEMVTGLF LFLAPTCGLIIRFMVGDGKQ >gi|283548478|gb|GG730299.1| GENE 204 237266 - 238657 1224 463 aa, chain - ## HITS:1 COG:STM2399 KEGG:ns NR:ns ## COG: STM2399 COG2271 # Protein_GI_number: 16765725 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Salmonella typhimurium LT2 # 1 463 1 463 463 830 91.0 0 MLSIFKTGPAANKVPAEKVQETYGRYRIQALLSVFLGYLAYYIVRNNFTLSTPYLKEHLD LSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLILCAIVNVGLGFSTGFWIF AALVVFNGLFQGMGVGPSFITIANWFPRKERGRVGAFWNISHNVGGGIVAPIVGAAFAIL GSEHWQSASYIVPAGVAVLFAFIVLMLGKGSPRQEGLPALEQMMPEEKVVLNSQRAAQAP ENMSAFQIFCTYVLRNKNAWYVSLVDVFVYMVRFGMISWLPIYLLTEKHFSKEQMSVAFL FFEWAAIPSTLLAGWLTDKLFKGRRMPLAMICMALIFVCLIGYWKSESLLMVTIFAAIVG CLIYVPQFLASVQTMEIVPSFAVGSAVGLRGFMSYIFGASLGTSLFGVMVDKMGWHGGFY LLMGGIVCCILFCYLSHRGALELEQQRKNAQQEEASLQLADAR >gi|283548478|gb|GG730299.1| GENE 205 239072 - 240271 901 399 aa, chain + ## HITS:1 COG:STM2398 KEGG:ns NR:ns ## COG: STM2398 COG1840 # Protein_GI_number: 16765724 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 5 399 3 397 397 630 86.0 1e-180 MTLSASCLAQSKELVMATTFSPGATAWIIQRWQTQPGSVMIRTLNRTSSSLEQLLDTANA ENVDLILTSSPMLLQHLQEHQKLAPFDNALPESQRLVPDSIRSTSVAVAISGFGLLINRS ALAARHLSPPADWGDLTLPKYQNALLMSSPSRSDTNHLMVESLLQQKGWEEGWATLLASA GNLVTISSRSFGVADKIKSGLGVAGPVIDNYANLLLNDPHLTFTYFPRSAVSPTYVAVLK NSQHASEARRFIRYLLSPEGQRILADANTGKYPVTQLAPDNPRAAQQAILMNQPALNYRL ILKRQRLVQRMFDTAISFRLAQLKDAWRALYSAEARLKRPLPEIRALLTSVPIDARSSED EAWLTQFDNKSFAEQQMMEWQLWFLKNQRQAISKLEELK >gi|283548478|gb|GG730299.1| GENE 206 240268 - 242274 1634 668 aa, chain + ## HITS:1 COG:STM2397 KEGG:ns NR:ns ## COG: STM2397 COG4192 # Protein_GI_number: 16765723 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating phosphoglycerate transport system # Organism: Salmonella typhimurium LT2 # 4 667 3 667 668 1040 86.0 0 MKGGSILQRLRQLSISSSLRGAFLTGALLTLSVSCVSLYSWHEQSSQIRYSLDDYFPRVH SAFLIEGNLNLVVDQLNEFLLAPNTTVRLQLRNQIISHLDNIEVLSRGLQPAEQQQLAVI LQDSRALMAELDRVLYNMFLVREKVSELSARIDWLHDDFTTELNSLVQDFTWQQGTLLDQ IEAKNGDAAQYLKRAREVQNEQQQVYTLARIENQIVDDLRDRLNELKSGSDDGMLVENHI RYLENLKKTADENIRTLDDWPSTITLRQTIDELLEIGMMKNKMPDTMRDYVAAQKALVDA NHAREATLGRFRTLLEAQLGSSHQQMQMFNQRLEQIVRVSGGLILLATLLALLLAWGLNH YFIRSRLVKRFTALNQAVVQIGLGRTDATIPVYGRDELGRIAGLLRHTLGQLNAQKNQLE QEVTERKEIESDLRAMQDELIQTAKLAVVGQTMTTLAHEINQPLNALSMYLFTAGRAIEQ GHSAQARSSLTKAEGLITRIDAIIRSLRQFARRAEPGAPLHPVDLRQTFTAAWELLAMRH KQQGTLTLPAHSVWVAGDEVRIQQVLVNILANALDACPATAQIDVHWQAEGSRLCVFVSD NGPGWPGALLPSLLKPFTTSKDVGLGIGLSICVSLMTQMNGELRLASTPGRNACVVLQFN LTDVNDVV >gi|283548478|gb|GG730299.1| GENE 207 242264 - 243511 1042 415 aa, chain + ## HITS:1 COG:STM2396 KEGG:ns NR:ns ## COG: STM2396 COG2204 # Protein_GI_number: 16765722 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Salmonella typhimurium LT2 # 1 415 1 415 415 682 82.0 0 MLCDEYAVLLIDDDADVLDAYTLLLEQEGYRVYACSNPFDARNWLQADWPGIVLSDVCMP GCNGIDLMTLFHQDDNQLPILLITGHGDVPMAVEAVKKGAWDFLQKPVDPGKLLLLVEDA LRQRKSVIARRHYCQQKLRVELIGYSDWVNQYRQRLQQLAETDIAVWFYGEAGTGRLTGA RYLHQLGRSTEGPFIRGELTPGNAGQLNDLIAQAQGGTLVLSHIECLTREQQHQLVHLQS QERRPFRLIGIGAASLVELAATNQIVAELYYCFAMTQIACQPLSQRPDDIEPLFRHYLQK ACLRLNHPVPDVDGELLKGMRRRVWLSNVRELANAAELFAVGLLPLAETANPQLHMPEPT PLDRRVEEYERQIITEALNIHQGRINEVAEYLQIPRKKLYLRMRKYGLSKEHYKF >gi|283548478|gb|GG730299.1| GENE 208 243615 - 244154 622 179 aa, chain - ## HITS:1 COG:yaiL KEGG:ns NR:ns ## COG: yaiL COG3122 # Protein_GI_number: 16128339 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 179 40 218 218 245 79.0 3e-65 MTKLTLQEQMLKAGLVSSKKMAKVQRTAKKSRVQAREAREAVEENKKAQVERDKQLSEQQ KQAALSKEYKAQIKQLIEMNKITVTRGDIGYNFTDNNLIKKVYVDKVTQSQLIKGRLAIA RLTAESSSDSEYAIIPAVVADKIAQRDASYIVLNCELSQEEKDEDDPYADFVIPDDLMW >gi|283548478|gb|GG730299.1| GENE 209 244792 - 245424 419 210 aa, chain + ## HITS:1 COG:no KEGG:Pat9b_4341 NR:ns ## KEGG: Pat9b_4341 # Name: not_defined # Def: hypothetical protein # Organism: Pantoea_At-9b # Pathway: not_defined # 1 209 1 209 209 295 71.0 9e-79 MTGRIDYQTEKYSFTEAAENARLAGQWADVIAECREMKAGPEERLRIALLNVDYVTSFEL PFRLLLLRTPQLIASVREALQLSQKNVIFNGKRFGCVYTLKASLDGIPDEFQYRLSHRIR RKGPEGLTEAPYQQIAKAVKAPRERLKLALESGLDVTALDGLFWFGSQRIAADVLRLRKS GMRVATGQTMVSDNLTATVRNIPFYRLVQE >gi|283548478|gb|GG730299.1| GENE 210 245646 - 246587 926 313 aa, chain - ## HITS:1 COG:STM2393 KEGG:ns NR:ns ## COG: STM2393 COG2116 # Protein_GI_number: 16765720 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Salmonella typhimurium LT2 # 1 312 1 312 313 557 88.0 1e-158 MNDIEKEKIDRHSDELQVESDEKSEGKKIEVDEDRLPSRAMAIHEHIRQDGEKEMERDAM ALLWSAIAAGLSMGASLLAKGIFHVQLEGVPGGFLLENLGYTFGFIIVIMARQQLFTENT VTAVLPVMQNPTLGNFGLLMRLWGVVLLGNIIGTGIAAWAFEYMPIFDEETRDAFVKIGM DVMKNSPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE ILYLVFNGTLHWGDFFWPFAIPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEEARLHAK REEKKDKIQKKQA >gi|283548478|gb|GG730299.1| GENE 211 246876 - 247631 917 251 aa, chain + ## HITS:1 COG:STM2392 KEGG:ns NR:ns ## COG: STM2392 COG2853 # Protein_GI_number: 16765719 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Surface lipoprotein # Organism: Salmonella typhimurium LT2 # 1 251 1 251 251 504 95.0 1e-143 MKLRLSALALGTTLLVGCASSGTEQQGRSDPFEGFNRSMYNFNFNVLDPYVVRPVAVAWR DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTLLGMGGFIDVAGM ANPKLQRVEPHRFGSTLGHYDVGYGPYMQLPFYGSFTLRDDGGDMVDTLYPVLSWLTWPL SIGKWTVEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGKLKPEENPNAKA IQDDLKDIDSE >gi|283548478|gb|GG730299.1| GENE 212 247693 - 249024 1134 443 aa, chain - ## HITS:1 COG:STM2391 KEGG:ns NR:ns ## COG: STM2391 COG2067 # Protein_GI_number: 16765718 # Func_class: I Lipid transport and metabolism # Function: Long-chain fatty acid transport protein # Organism: Salmonella typhimurium LT2 # 1 443 3 437 437 651 75.0 0 MSQKTLFTKSALAVAVAIISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNASRNPA LIMMFDRPTFSAGAIFVDPDVDISGRSRIGNDASQDNIAPTAWIPNLHFVAPINDQFGWG ASVTSNYGLATEFNNNYTAGSMGGKTDLETLNLNLSGAYRLNNHFSFGLGFNAVYAKAKL ERYAGDLPQQIVAGSGGRVPPSLAAQYPADTQIARLKGDEWGFGWNAGILYEVDKDNRYG FTYRSEVKVDFNGDYRSNLPSTDRIPAQLRPVFASLPAGTNGSTIDGSLDLNLPEMWELS GYNRVAPQWAVHYSMAYTSWSQFQELKAKGNNGQTLFYKEEGFKDSYRIALGTTYYYDDT WTFRTGIAFDDSPVPANRRSISIPDQDRFWLSAGTTYAFNKDASLDVGVSYMHGQKVKFQ EGPYSFESEGKAWLYGMNLNYAF >gi|283548478|gb|GG730299.1| GENE 213 249396 - 249680 321 94 aa, chain + ## HITS:1 COG:yfcZ KEGG:ns NR:ns ## COG: yfcZ COG3691 # Protein_GI_number: 16130276 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 94 9 102 102 151 93.0 2e-37 MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEETLAALTEKARGVESEPCK ITSTFTEESEGVRLDIDFVFACEAETLIFQLGLR >gi|283548478|gb|GG730299.1| GENE 214 249857 - 251167 1219 436 aa, chain + ## HITS:1 COG:yfcY KEGG:ns NR:ns ## COG: yfcY COG0183 # Protein_GI_number: 16130275 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 436 1 436 436 756 94.0 0 MSQALPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGELLARSEIPADVIE QLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRA GIAGGADSSSVLPIGVSKKLARVLVDVNKARTTGQRLKLFSRLRLRDLMPVPPAVAEYST GLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLADEVMTTYAPPFKDPLSE DNNIRGNSTLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPMGY LRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLIDMHEAFAAQTLANLQLLGSE RFARDVLGRTHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLNELRRRGGGFGLVT ACAAGGLGAAMVLEAE >gi|283548478|gb|GG730299.1| GENE 215 251167 - 253311 1559 714 aa, chain + ## HITS:1 COG:STM2388_2 KEGG:ns NR:ns ## COG: STM2388_2 COG1250 # Protein_GI_number: 16765715 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Salmonella typhimurium LT2 # 324 712 17 405 408 726 91.0 0 MEMTSAFTLNVRLDNVAVVTIDVPGEKMNTLKAEFASQVRAILKQIRDNKALRGVVFISA KPDNFIAGADINMIGSCRSTQEAETLARQGQQIMAEIHALPIPVIAAIHGACLGGGLEMA LACHNRICTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQAL KAGLVDEVVPQSILLEAAVELAKKDSSTHRTLPVRERVLAGPLGRALLFRMASKKTAQKT QGNYPATERILEVIETGLAQGSSSGYDAEARAFGELAMTPQSQALRHIFFANTDVKKDPG SDVQPGPLNRVGILGGGLMGGGIAYVTACKGGLPVRIKDINAKGINHALKYSWDQLETKV RRRHIKASERDKQLALISGSTDYRGFAHRDLVIEAVFEDLALKQQMVAEVEQHCAPHTIF ASNTSSLPIGDIAANAARPEQVVGLHFFSPVEKMPLVEVIPHAATSEQTIATTVKLAKKQ GKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVETIDAALVKFGFPVGPIQLLDEVG IDTGTKIIPVLEAAYGERFSAPANVVASILNDDRKGRKNGRGFYLYGAKGRKSKKQVDPA IYTLIGVQGQGRLTAVQVAERCVMLMLNEAARCFDEKVVRSARDGDIGAVFGIGFPPFLG GPFRYMDSLGAGEVVATLQRLTAQYGSRFTPCEQLLQMAERGERFWNNRETDLS >gi|283548478|gb|GG730299.1| GENE 216 253539 - 254009 421 156 aa, chain + ## HITS:1 COG:STM2387 KEGG:ns NR:ns ## COG: STM2387 COG2062 # Protein_GI_number: 16765714 # Func_class: T Signal transduction mechanisms # Function: Phosphohistidine phosphatase SixA # Organism: Salmonella typhimurium LT2 # 1 156 6 161 161 290 93.0 9e-79 MRHGDAALDAASDSVRPLTSCGCDESRLMANWLKGQKVDIERVLVSPFLRAEQTLDVVGE CMNLPTGVDVLPELTPCGDVGLVSAYLQALANEGIATALVISHLPLVGYLVSELCPGETP PMFTTSAIASVTLDESGKGVFNWQMSPCNLKMAKAI >gi|283548478|gb|GG730299.1| GENE 217 254130 - 254681 529 183 aa, chain - ## HITS:1 COG:STM2386 KEGG:ns NR:ns ## COG: STM2386 COG2840 # Protein_GI_number: 16765713 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 334 93.0 6e-92 MKKKTSLSEEDQTLFRQLMTGTRKIKQDTIVHRPLRKKITEVPVKRLLQEQADASHYFSD EFQPLLNTDGPVRYLRADVSHFELKKMRRGDYSPELFLDLHGLTQQQAKQELGALIAACR REHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWLPP ELP >gi|283548478|gb|GG730299.1| GENE 218 254848 - 255780 1543 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr. W3110] # 1 310 1 310 310 598 92 1e-169 MDKIFVDEAVSELHTIQDMLRWAVSRFSAANIWYGHGTDNPWDEAVQLVLPTLYLPLDIP EDMRTARLTSSERHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGEL INNRFAGLVSEQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISTDALAVTEHNIEEHG LIHHVTPIRSDLFRDLLKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGSDGLKL TRRILGNAPDYLADNGILICEVGNSMVHLIEQYPDVPFTWLEFDNGGDGVFMLTKEQLVA AREHFSIYKD >gi|283548478|gb|GG730299.1| GENE 219 255820 - 256905 1147 361 aa, chain + ## HITS:1 COG:ECs3213 KEGG:ns NR:ns ## COG: ECs3213 COG0082 # Protein_GI_number: 15832467 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Escherichia coli O157:H7 # 1 361 1 361 361 682 97.0 0 MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGISLTEADLQHDLDRRRPGTSRYTTQRR EPDRVKILSGVFEGVTTGTSIGLLIENTDQRSQDYGAIKDVFRPGHADYTYEQKYGLRDY RGGGRSSARETAMRVAAGAIAKKYLAEKFGVEIRGCLTQMGDIPLEIKDWSQVELNPFFC PDPDKLEALDELMRGLKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV KGVEIGDGFDVVALRGSQNRDEITKEGFQSNHAGGILGGISSGQQIVAHMALKPTSSITV PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR W >gi|283548478|gb|GG730299.1| GENE 220 256909 - 257733 683 274 aa, chain + ## HITS:1 COG:STM2383 KEGG:ns NR:ns ## COG: STM2383 COG3770 # Protein_GI_number: 16765710 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein endopeptidase # Organism: Salmonella typhimurium LT2 # 1 274 1 274 274 497 89.0 1e-140 MKKTALAALALLASTACLAATPWQKITHPVAGSPQSIGAFANGCIVGADTLPVQSEHYQV MRTDQRRYFGHPDLVMFIQRLSNQANNLGLGTVLIGDMGMPAGGRFNGGHASHQTGLDVD IFLQLPKTRWTQAQLLRPQALDLVSRDGKHVVPSLWKPEIFSLIRLAAKDNEVTRIFVNP AIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLPPPGDGCGAELQ SWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVL >gi|283548478|gb|GG730299.1| GENE 221 257733 - 258542 664 269 aa, chain + ## HITS:1 COG:STM2382 KEGG:ns NR:ns ## COG: STM2382 COG0730 # Protein_GI_number: 16765709 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 434 89.0 1e-122 MDHFASLFMVSPLLLAVLFFVAMLAGFIDSLAGGGGLLTIPALMAAGMPPAHALATNKLQ ACGGSISSSLYFIRQGVVNLADQKLNIFMTFIGSMSGALLVQHVQSDILRQILPVLVICI GLYFLLMPKVGEEDRQRRLHGLPFALVAGGCVGFYDGFFGPAAGSFYALCFVMLCGYNLA KSTAHAKVLNATSNIGGLLLFALGGKVIWATGFVMLIGQFIGARMGSRLVLSKGQKLIRP MIVIVSAVMSAKLLYDNHGQEILHWLGMN >gi|283548478|gb|GG730299.1| GENE 222 258542 - 259090 461 182 aa, chain + ## HITS:1 COG:STM2381 KEGG:ns NR:ns ## COG: STM2381 COG3101 # Protein_GI_number: 16765708 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 182 1 182 182 358 93.0 2e-99 MNNTHHYEQLIEIFNGCFADEFNTRLIKGDDEPIYLPADAEVPYHRIVFAHGYYASALHE ISHWCIAGKARRELVDFGYWYCPDGRDAKTQCQFEDVEVKPQAFDWLFCMAAGYPFNVSC DNLEGDFEPDRVVFQRRVHAQVMEYLEKGIPERPARFISALQNYYHTPELKAEQFPWPEA LN >gi|283548478|gb|GG730299.1| GENE 223 259123 - 259398 388 91 aa, chain + ## HITS:1 COG:no KEGG:CKO_00460 NR:ns ## KEGG: CKO_00460 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 89 1 89 92 141 93.0 9e-33 MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAVAELDAGEDHSAEALYANVTSS LEKAISAGELSPRDQALVKEMWDALFQKATQ >gi|283548478|gb|GG730299.1| GENE 224 259512 - 261512 1589 666 aa, chain - ## HITS:1 COG:STM2379_2 KEGG:ns NR:ns ## COG: STM2379_2 COG0665 # Protein_GI_number: 16765706 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Salmonella typhimurium LT2 # 256 666 1 411 411 644 77.0 0 MKQYAIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNHLAQRFPVHSRPLF VVAESGFGTGLNFLTLWQAFADFRDTHPNATLERLHFISFEKYPLTREDLTLAHQHWPEL APWATALQAQWPLPLAGCHRLLLDDGRVTLDLWFGDINELTSKLDDSLNQKVDAWFLDGF APAKNPDMWTPTLFNAMARLARPGGTLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREML CGVMEQTLTLPSSAPWFARTGTDKREAAIIGGGIASALLSLALLRRGWQVTLYCADEKPA TGASGNRQGALYPLLSKHDAAINLFFPTAFTFARRLYDALPVEFAHEWCGVTQLAWDEKS QQKITQMLSLELPDALAVGVDAQQVLQTTGVETGCGGIQYPAGGWLCPAQLTAAVLDYAT TLGLRTCYQHTLASLSRQTASWQLTFACGKTATHAAVVLANGYRINRFEQTQPLPVYSVG GQVSHIPTTPTLSALRQVLCYDGYLTPQNPENQQHCIGASYHRGSEETDYREDDQQQNRQ RLIDCFPHAAWAKEVDVSAHAARCGVRCATRDHIPMVGNVADYDATLSQYVTLAEDKAHA VSAPVYADLFMLGALGSRGLCSAPLCAEILASQMSDEPIPLDASTLAALNPNRLWVRKLL KGKAVK >gi|283548478|gb|GG730299.1| GENE 225 261672 - 262892 1328 406 aa, chain + ## HITS:1 COG:ECs3207 KEGG:ns NR:ns ## COG: ECs3207 COG0304 # Protein_GI_number: 15832461 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Escherichia coli O157:H7 # 1 405 1 405 406 739 96.0 0 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLI DRKVVRFMSDASIYAFLSMEQAVADAGLAAEDYQNNPRVGLIAGSGGGSPRFQVFGADAM RSPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLG KQDIVFAGGGEELCWEMACEFDAMGALSTKYNDDPSKASRTYDANRDGFVIAGGGGMVVV EELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMQMAMHGVDTPIDYLNSHGT STPVGDVKELGAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN IEELDEQAAGLNIVTKPTEQALTTVMSNSFGFGGTNATLVMRKLKA >gi|283548478|gb|GG730299.1| GENE 226 262937 - 263461 456 174 aa, chain - ## HITS:1 COG:no KEGG:SeHA_C2618 NR:ns ## KEGG: SeHA_C2618 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 171 1 171 172 267 73.0 1e-70 MKAFSLIALILMLCGCSAPHQDSTQAVKQFYLAWMNINTQDLDTPHDTSALMQRYVAKDL IERLALIDSLYEQEILGADYFMYVQDYDPKWIPQLRVGRAQPFLGGEKVDVQLGTGSIPL QLEVYTRWEDGRWKIYRVRDISDSYEHLIYSAGDITRAQAWSAEIAPDYEKMNK >gi|283548478|gb|GG730299.1| GENE 227 263755 - 264933 1286 392 aa, chain + ## HITS:1 COG:STM2372 KEGG:ns NR:ns ## COG: STM2372 COG0477 # Protein_GI_number: 16765699 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 391 1 391 392 578 93.0 1e-165 MTAVTQQEKTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHQELGYGNTMVGIAVGIQ FLATVLTRGYAGRLADQYGAKRSALQGMFACALAGAAWLLAALLPVSVPVKFALLIVGRL ILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAAL AGTTMILPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFIS LYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLILLWQAP SAWVALLGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVSGPVAGV LATAYGYPSVFLAGAISAVVGIFVTLLTLRKS >gi|283548478|gb|GG730299.1| GENE 228 264930 - 265937 966 335 aa, chain - ## HITS:1 COG:no KEGG:CKO_00465 NR:ns ## KEGG: CKO_00465 # Name: flk # Def: flagella biosynthesis regulator # Organism: C.koseri # Pathway: not_defined # 1 335 2 334 334 479 88.0 1e-134 MQPISGTPARPPGEGQNAPSVAGEQPLSTLQRTVLERLITRLISLTQQQSAEVWAGMKHD LGVKSDTPLQSRHFPAAEQNLNQRLEVAQQNHANRQVLSQLTELLSQGNNRQAVSDFIRQ QYGQTALSQLTPEQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAAA TGESGKMIWQSMLELSGVKSGELIPAKQFTHLVTWLQARQTLSLQSAPTLQTLQAALKQP LEPNELTAIKEYAQQTYQIQPQSILTTVQVLDLLNQIFLRRVERDREQELNDPRYPQPIY SPFAPMIETVKSLSARPGLLFIALMIALAIFWLVA >gi|283548478|gb|GG730299.1| GENE 229 266046 - 267182 1196 378 aa, chain + ## HITS:1 COG:STM2370 KEGG:ns NR:ns ## COG: STM2370 COG0111 # Protein_GI_number: 16765697 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 378 1 378 378 707 91.0 0 MKILVDENMPYARELFSRLGEVKAVPGRPIPVAELDDADALMVRSVTKVNESLLSGKPVK FVGTATAGTDHVDEAWLAQSGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFALRDRTVG IVGVGNVGGRLQARLEALGIRTLLCDPPRADRGDEGDFRSLDELVQQADVLTFHTPLFKD GPYKTLHLADDALISRLKPGTILINACRGPVIDNTALLNRLNAGQALSVVLDVWEGEPDL NVALLEKADIGTAHIAGYTLEGKARGTTQVFEAYSKFIGREQHVALNTLLPAPEFGRITL HGPLDQPTLKRLAHLVYDVRRDDAPLRKVAGIPGEFDKLRKNYLERREWSSLYVMCDDAT AAALLCKLGFNAVHHPAH >gi|283548478|gb|GG730299.1| GENE 230 267250 - 268263 1323 337 aa, chain + ## HITS:1 COG:STM2369 KEGG:ns NR:ns ## COG: STM2369 COG0136 # Protein_GI_number: 16765696 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 337 1 337 337 608 90.0 1e-174 MSEGWNIAILGATGAVGEALLDTLAERQFPVGEIYALARNESAGEHLRYNGKSVIVQDVA DFDWTQAQLAFFVAGAEATAAWVEEATNAGCLVIDSSGLFALEPDVPLVVPDVNPFVLAD YRNRNVIAVPTSLTSQLLSALKPLIDDGGLSRITVTNIISASAHGKKAVDALAGQSAKLL NGIPIDEDDFFGRQLAFNMLPLLPDREGSVREERRIVDEVRKIMQDDGLLISASIVQSPV FYGHAQMVNFEALRPLAAEEARDAFSRGEDVVLSEETDFPTQVGDASGSPHLSIGCVHND YGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQEYLY >gi|283548478|gb|GG730299.1| GENE 231 268263 - 269075 733 270 aa, chain + ## HITS:1 COG:truA KEGG:ns NR:ns ## COG: truA COG0101 # Protein_GI_number: 16130253 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Escherichia coli K12 # 1 270 1 270 270 526 94.0 1e-149 MSDLQQPSPHKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVSVFCAGRTD AGVHGTGQVVHFETHAVRKDAAWTLGVNANLPGDIAVRWVKAVPDDFHARFSATARRYRY IIYNHRLRPAVLGKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMH INVERFGAYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA KAEGLYLVAVDYPDRFDLPKPPMGPLFLAD >gi|283548478|gb|GG730299.1| GENE 232 269100 - 269747 800 215 aa, chain + ## HITS:1 COG:STM2367 KEGG:ns NR:ns ## COG: STM2367 COG0586 # Protein_GI_number: 16765694 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 214 1 214 219 360 89.0 2e-99 MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGA LSALPTNDLNVHLMVALMIVAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHAF YERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAMYNVVGALLWVLLFTYAGYLFGD LPIVQENLKLLIVAIIVLSVLPGVIEVIRHKRAAK >gi|283548478|gb|GG730299.1| GENE 233 269897 - 270811 1011 304 aa, chain + ## HITS:1 COG:STM2366 KEGG:ns NR:ns ## COG: STM2366 COG0777 # Protein_GI_number: 16765693 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Salmonella typhimurium LT2 # 1 304 1 304 304 577 98.0 1e-165 MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMSARNR LHSLLDEGTLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLHGMPV VAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKT SAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPNPDEPREGEVVPPVPDQ ESEA >gi|283548478|gb|GG730299.1| GENE 234 271080 - 272348 1258 422 aa, chain + ## HITS:1 COG:folC KEGG:ns NR:ns ## COG: folC COG0285 # Protein_GI_number: 16130250 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Escherichia coli K12 # 4 422 4 422 422 727 89.0 0 MDNKRTPRAASPLASWLSYLENLHSKTIDLGLERVSLVARNLGVLKPAPFVFTVAGTNGK GTTCRTLESVLSAAGFKVGVYSSPHLVRYTERVRIQGGELPESAHTASFAEIEEARGDIS LTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPD RESIGREKAGIFRAEKPAIVGEPEMPYTIADVAQECGAILQRRGVDWRYTVTENDWSFTD AHGTLAHLPLPQVPQPNAATALAALRASGLNVSEQAIREGIEQAILPGRFQIVSESPRVI FDVAHNPHAAEYLTGRLKKLVKSGRVLAVIGMLHDKDIAGTLAWLKSVVDVWYCAPLEGP RGATAEQLLEHLGKGEAYGSVAQAWSAALAEAKPEDTVLVCGSFHTVAHVMEVIDVGRSG GE >gi|283548478|gb|GG730299.1| GENE 235 272377 - 273006 456 209 aa, chain + ## HITS:1 COG:STM2364 KEGG:ns NR:ns ## COG: STM2364 COG3147 # Protein_GI_number: 16765691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 209 14 224 224 248 82.0 6e-66 MLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMMPAATQALPTQPPEGAAE EVRAGDAAAPSLDPSRMTTASSAELDPVPVPVEPPKPKPKPQPVVAAPAPTPAPAPAPKP VAEEAPAPTGKAYVVQLGALKNADKVNEIVGKLRGAGFRVYTSPSTPVQGKITRILVGPD ASRDKLKNSLGELQKISGLSGVVMGYTPN >gi|283548478|gb|GG730299.1| GENE 236 273209 - 273697 389 162 aa, chain + ## HITS:1 COG:STM2363 KEGG:ns NR:ns ## COG: STM2363 COG1286 # Protein_GI_number: 16765690 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Salmonella typhimurium LT2 # 1 161 1 161 162 271 97.0 3e-73 MVWIDYAIIAVIGFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELV RNGIAIAILFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGVCFGALRGALIVAAILFFL DTFTGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLPKV >gi|283548478|gb|GG730299.1| GENE 237 273731 - 275248 1822 505 aa, chain + ## HITS:1 COG:STM2362 KEGG:ns NR:ns ## COG: STM2362 COG0034 # Protein_GI_number: 16765689 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Salmonella typhimurium LT2 # 1 505 1 505 505 1015 98.0 0 MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGMVSDIFEARH MQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKR RHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRQIRGAYACVAMIIGHGMV AFRDPNGIRPLVLGKRDIGDGRTEYMVASESVALDTLGFEFLRDVAPGEAVYITEKGQLF TRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVI PIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRD KNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPTATELIAHG REVDEIRQIIGADGLIFQDLNDLIEAVRAENPDIQQFECSVFNGVYVTKDVDQQYLDFLD SLRNDDAKAILRQNEAENLEMHNEG >gi|283548478|gb|GG730299.1| GENE 238 275346 - 275915 582 189 aa, chain + ## HITS:1 COG:ECs3195 KEGG:ns NR:ns ## COG: ECs3195 COG0163 # Protein_GI_number: 15832449 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Escherichia coli O157:H7 # 1 189 1 189 189 333 91.0 1e-91 MKRLIIGISGASGAIYGVRLLQVLRDVTDVETHLVMSAAARQTLALETDLSVRDVQALAN VNHDTRDIAASISSGSFQTAGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVL CVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQTLDDVINQTVNRVLDQFDISLPQ DLFTRWQGA >gi|283548478|gb|GG730299.1| GENE 239 276203 - 276985 980 260 aa, chain + ## HITS:1 COG:STM2355 KEGG:ns NR:ns ## COG: STM2355 COG0834 # Protein_GI_number: 16765682 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 1 260 1 260 260 457 94.0 1e-128 MKKTVLALSLLVGLSATAASYAALPQTVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMC KRMQIKCTWVASDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADSRLIAAK GSPIQPTLDSLKGKHVGVLQGSTQEAYANDNWRSKGVDVVAYANQDLIYSDLTAGRLDAA LQDEVAASEGFLKQPAGKDYAFAGPSVKDKKYFGDGTGIGLRKDDAELKAAFDKALGELR KDGTYDKMASKYFNFNVYGD >gi|283548478|gb|GG730299.1| GENE 240 277233 - 278015 1114 260 aa, chain + ## HITS:1 COG:ECs3193 KEGG:ns NR:ns ## COG: ECs3193 COG0834 # Protein_GI_number: 15832447 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 24 260 24 260 260 453 97.0 1e-127 MKKLVLSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELC KRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAK DSAIQPTIESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAA FQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKDDNELREALNKAFAEMR ADGTYEKLAKKYFDFDVYGG >gi|283548478|gb|GG730299.1| GENE 241 278202 - 278888 901 228 aa, chain + ## HITS:1 COG:STM2353 KEGG:ns NR:ns ## COG: STM2353 COG4215 # Protein_GI_number: 16765680 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 228 1 228 228 372 93.0 1e-103 MLYGFSGVILQGAIVTLELALSSVVLAVLIGLVGAAAKLSQSRALGLIFEAYTTLIRGVP DLVLMLLIFYGLQIALNAVTDAMGISQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVP KGHIEAATAFGFTSSQIFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKAT QLAGKSTWEPFYFAVVCGVIYLVFTTVSNGVLLYLERRYSVGVKRADL >gi|283548478|gb|GG730299.1| GENE 242 278885 - 279592 684 235 aa, chain + ## HITS:1 COG:STM2352 KEGG:ns NR:ns ## COG: STM2352 COG4160 # Protein_GI_number: 16765679 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 235 1 235 235 414 95.0 1e-115 MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGILALFLAIGRVSSNKFIQFPIW LFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTDFLNAFFRSGLNCTVLALTLNTCAYTTEI FAGAIRSVPHGEIEAARAYGFSSFKLYRCIILPSALRIALPAYSNEVILMLHSTALAFTA TVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFRKAEKRWLQHVSSK >gi|283548478|gb|GG730299.1| GENE 243 279606 - 280379 261 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 20 232 20 221 223 105 34 1e-20 MSENKLNVIDLHKHYGEHEVLKGVSLRANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG SIVVSGQNIGLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV LGLSKHEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARNVSTHVIFLHQGKIEEEGDPEQVF GNPQSPRLQQFLKGSLK >gi|283548478|gb|GG730299.1| GENE 244 280413 - 280835 427 140 aa, chain - ## HITS:1 COG:BS_yjcK KEGG:ns NR:ns ## COG: BS_yjcK COG1670 # Protein_GI_number: 16078254 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Bacillus subtilis # 51 130 92 171 181 61 42.0 5e-10 MRYMGDIAPAKDTRLLFARRLAAQHTFVIREHNNPMPLGDIGLQISHLYPQEADLGYTIM PCAQGKGIASEAVRAVCQYAFEQAGVTAINAYALAENKGSIRVLEKTGFVRTQVLEKAYE INGIAHDDWVYRLESSALKR >gi|283548478|gb|GG730299.1| GENE 245 281000 - 281893 960 297 aa, chain - ## HITS:1 COG:STM2350 KEGG:ns NR:ns ## COG: STM2350 COG1090 # Protein_GI_number: 16765677 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Salmonella typhimurium LT2 # 1 297 1 297 297 542 86.0 1e-154 MQILITGGTGLIGRHLIPRLLELGHQITVVTRTPDKARQILDSRVTLWKGLAEQQNLNGI DAVINLAGEPIADKRWSAEQKERLCQSRWGITQKLVDLINASETPPAVLISGSATGYYGD LGEVVVTEEEPPHNEFTHKLCARWEHIASTAQSDKTRVCMLRTGVVLASAGGILGKMVPP FRLGLGGPIGNGRQYLPWIHIDDMVNGIIWLLNNDLRGPFNMVSPYPVHNEQFAHSLGHA LNRPAILRVPASVMRLLMGESSVLVLGGQRALPKRLEASGFAFRWYDLEEALADVIR >gi|283548478|gb|GG730299.1| GENE 246 281913 - 282275 419 120 aa, chain - ## HITS:1 COG:ECs3187 KEGG:ns NR:ns ## COG: ECs3187 COG1539 # Protein_GI_number: 15832441 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Escherichia coli O157:H7 # 1 120 1 120 120 198 90.0 3e-51 MSQPDAIIRIKNLRLRTFIGIKEEEILNRQDIVINIAIHYPADKARISEDINDALNYRTI TKSIIAHVEGNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDKLHALRYADSVSMALSWQR >gi|283548478|gb|GG730299.1| GENE 247 282330 - 282986 560 218 aa, chain - ## HITS:1 COG:STM2349 KEGG:ns NR:ns ## COG: STM2349 COG0625 # Protein_GI_number: 16765676 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 8 214 1 207 215 382 87.0 1e-106 MTKRTLKMIDLYYTPSPNGHKITLFLEEAQLQYRLIHVDISKGSQFRPDFLQISPNNKIP AIIDTAPMDGGRPISLFESGEILLYLAEKSGKLLSGELRERHTTLQWLFWQVSGLGPMLG QNHHFSHYAPQTIPYAIERYQVETQRLYNVMNKRLETSPWLGGDHYSIADIACWPWIDAH QRQRIDLDNYPAVNNWHERIRTRPATERAMLQAQSEKR >gi|283548478|gb|GG730299.1| GENE 248 283100 - 283744 528 214 aa, chain + ## HITS:1 COG:STM2348 KEGG:ns NR:ns ## COG: STM2348 COG0625 # Protein_GI_number: 16765675 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 1 213 1 213 214 343 80.0 1e-94 MSKPAITLWSDANFFSPYVLSVYVALQEKGLPFTLKTVDLNSGEHLQPSWQGYALTRRVP VLEIDGFELSESSAITEFLEESFAPPQWERIYPHDVQKRARARQVQAWIRSDLMPVREER PTDVVFAGVKKAPLSQAGQASVEKLFATASSLLSHGKQNLFGEWCIADCDLALMLNRLVL NGDEVPEALAEYAAFQWQRASVQRFIALSAKRSC >gi|283548478|gb|GG730299.1| GENE 249 283800 - 284351 462 183 aa, chain + ## HITS:1 COG:STM2347 KEGG:ns NR:ns ## COG: STM2347 COG0622 # Protein_GI_number: 16765674 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Salmonella typhimurium LT2 # 1 182 1 182 183 323 87.0 8e-89 MKLMFASDIHGSLPATERVLERFAASGAQWLVILGDVLNHGPRNALPEGYAPAQVAERLN ELAARIIAVRGNCDSEVDQMLLHFPLTAPWQQILTEKQRLFLTHGHLFGPQNMPALSAGD VLVYGHTHLPVAGLQGDIYHFNPGSVSIPKGGFAASYGILDDNVLSVMALNDQSVIAQVE INP >gi|283548478|gb|GG730299.1| GENE 250 284409 - 284963 517 184 aa, chain + ## HITS:1 COG:STM2346 KEGG:ns NR:ns ## COG: STM2346 COG0494 # Protein_GI_number: 16765673 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Salmonella typhimurium LT2 # 1 184 1 184 184 318 94.0 2e-87 MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMGKILVQRRTET KDFLPGMLDATAGGVVQADEQLLDSARREAEEELGIAGVPFAEHGQFYFEDQNCRVWGGL FSCVSHGPFALQEEEVSEVCWLTPEEITARCDEFTPDSLKALALWMTRNAKNEGAKAEKQ EEAE >gi|283548478|gb|GG730299.1| GENE 251 285020 - 286540 1771 506 aa, chain - ## HITS:1 COG:yfcC KEGG:ns NR:ns ## COG: yfcC COG1288 # Protein_GI_number: 16130233 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 506 8 513 513 873 92.0 0 MSAVTETKPAKKWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQEVQYQVDGQTKTRKVV DPHSFRILTNDAGEEQYHRVQFFTTGDERPGLMNFPFEGLTSGSKFGTAVGIIMFMLVIG GAFGIVMRTGTIDNGILALIRHTRGNEVLFIPVLFILFSLGGAVFGMGEEAVAFAIIIAP LMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQGIAGVPVLSGSGLRIAVWVVAT LIGLTFTLAYAARIKKNPLLSRVHESDRFFREQQDDVVERRFTLGDWMVLLVLTAVMIWV VWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRLNGMTVNVMASSFTEGARMMIAPALLV GFAKGILLLVGNGEAGEASVLNTLLHSIANGISGLDNAIAAWFMLLFQAVFNFFVTSGSG QAALTMPLLAPLGDLVGVNRQVTVLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLK VGATLLGLLFIMSSVVVIGAQIMGYH >gi|283548478|gb|GG730299.1| GENE 252 286742 - 288886 2454 714 aa, chain - ## HITS:1 COG:STM2338_1 KEGG:ns NR:ns ## COG: STM2338_1 COG0857 # Protein_GI_number: 16765665 # Func_class: R General function prediction only # Function: BioD-like N-terminal domain of phosphotransacetylase # Organism: Salmonella typhimurium LT2 # 1 391 1 391 391 745 97.0 0 MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRAGGDAPDQTTTIVRAN SNLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTKDAEVVLVEGLVPTRKHQFAQS LNYEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRSSFGGAKNTNITGVIVNKLNAPVDD QGRTRPDLSEIFDDSSKAQVIKVDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHLNA TIVNEGDINTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEIG ALLLTGGYEMDARISKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEKV QEYVANYINADWIESLTATSERSRRLSPPAFRYQLTELARKAGKRVVLPEGDEPRTVKAA AICAERGIATCVLLGNPDEITRVAASQGVELGAGVEIVDPDVVRESYVARLVELRKNKGM TETVAREQLEDNVVLGTLMLEQDDVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVF FMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSAESAIAFGIEPRVAMLSYSTGTSGAGSD VEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGN TTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQSSQQQH >gi|283548478|gb|GG730299.1| GENE 253 288963 - 290165 1485 400 aa, chain - ## HITS:1 COG:STM2337 KEGG:ns NR:ns ## COG: STM2337 COG0282 # Protein_GI_number: 16765664 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Salmonella typhimurium LT2 # 1 400 1 400 400 792 98.0 0 MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARIKWKMDGGKQEAALGAG AAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSSVVIDDSVIQGIKDSASFA PLHNPAHLIGIAEALKSFPSLKDKNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYG AHGTSHFFVTQEAAKMLNKPVDELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVM GTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGLLGLTEVTSDCRYVEDNYTTKEDAK RAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKLGVLGFEVDHER NLAARFGKSGFINKEGTRPAVVIPTNEELVIAQDASRLTA >gi|283548478|gb|GG730299.1| GENE 254 290505 - 290960 356 151 aa, chain + ## HITS:1 COG:STM2336 KEGG:ns NR:ns ## COG: STM2336 COG3092 # Protein_GI_number: 16765663 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 151 1 151 151 294 98.0 3e-80 MSTPDNRSVNFFSLFRRGQHYAKTWPMEKRLAPVFVENRVIRMTRYAIRFMPPVAVFTLC WQIALGGQLGPAVATALFALSLPMQGMWWLGKRSVTPLPPSILNWFYEVRGKLQEAGQAL SPVEGKPDYQALADTLKRAFKQLDKTFLDDL >gi|283548478|gb|GG730299.1| GENE 255 291044 - 291538 644 164 aa, chain + ## HITS:1 COG:STM2335 KEGG:ns NR:ns ## COG: STM2335 COG3013 # Protein_GI_number: 16765662 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 164 1 164 164 315 96.0 2e-86 MEMTNAQRLILSNQYKMMTMLDPTNAERYRRLQTIIERGYGLQMRELDREFGELTEETCR TIIDIMEMYHALHVSWTNLKDAQSIDERRVTFLGFDAATEARFLGYVRFMVNVEGRYTHF DAGTHGFNAQTPMWEKYQRMLNVWHSCPRQYHLSANEINQIINA >gi|283548478|gb|GG730299.1| GENE 256 291531 - 292208 633 225 aa, chain + ## HITS:1 COG:STM2334 KEGG:ns NR:ns ## COG: STM2334 COG0637 # Protein_GI_number: 16765661 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Salmonella typhimurium LT2 # 1 223 1 223 225 376 91.0 1e-104 MPEGASVQCKGFLFDLDGTLVDSLPAVERAWCNWADRFGLDHAEVLGFIHGKQAITSLRH FMVGKSEAEIAAEFTRLEQIEATETAGITALPGAVDLLNHLNKAGIPWAIVTSGSMPVAR ARHRVAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECAVVEDAPAGVLSGLAA GCHVIAVNAPADTPRLDEVDFSLTSLEHLSVTKQPNGNVVVVRNA >gi|283548478|gb|GG730299.1| GENE 257 292286 - 294118 1981 610 aa, chain + ## HITS:1 COG:STM2333 KEGG:ns NR:ns ## COG: STM2333 COG0471 # Protein_GI_number: 16765660 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Salmonella typhimurium LT2 # 1 610 1 608 608 994 91.0 0 MNGELIWVLSLLAIAVILFATGRVRMDAIALLVIIAFVLSGTLSITEAFSGFSDPNVILI AALFIIGDGLVRTGVATVMGAWLVKVAGSSEVKMLVLLMITVAGLGAFMSSTGVVAIFIP VVLSVSMRMQISPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGLNGFSFFSVTP LGVVVLVLGIIYMLLMRFMLNGDDSGQPGDGWKRRTFRDLIKEYRLTGRARRLAIRPGSP MIGQRLDDLKLRERYGANVIGVERWRRFRRVIVDVNGVSEFRARDVLLIDMSAADVDLRE FCSEQLLEPMVLRGEYFSEQALDVGMAEISLIPESELIGKTVREIAFRTRYGLNVVGLKR DGTALAGAVVDEPLLMGDIILVVGNWKLITLLGQKGRDFVVLNMPAEVSEASPAHSQAPH AIFCLVLMVALMLTDEIPNTVAAIIACLLMGKFRCIDAESAYKAIHWPSIILIVGMMPFA LALQKTGGVDLVVKGLMDVGGGYGPYMMLGCLFVLCASIGLFISNTATAVLMAPIALAAA KSMGVSPYPFAMVIAMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKIGVPFTAIVMAVC VVMIPMLFPF >gi|283548478|gb|GG730299.1| GENE 258 294222 - 294758 559 178 aa, chain - ## HITS:1 COG:ECs3175 KEGG:ns NR:ns ## COG: ECs3175 COG1896 # Protein_GI_number: 15832429 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Escherichia coli O157:H7 # 1 178 22 199 199 319 95.0 2e-87 MRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGQVNAERIALLAMYHDASEVLTGDLPTP VKYFNSQIAQEYKAIEKIAQQKLVDMVPDELRDIFAPLIDEHAYSEEEKSIVKQADALCA YLKCLEELSAGNNEFLLAKTRLEKTLESRRSKEMDYFMEVFVPSFHLSLDEISQDSPL >gi|283548478|gb|GG730299.1| GENE 259 294938 - 296152 1287 404 aa, chain - ## HITS:1 COG:STM2331 KEGG:ns NR:ns ## COG: STM2331 COG0436 # Protein_GI_number: 16765658 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Salmonella typhimurium LT2 # 1 404 1 404 404 836 97.0 0 MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPAPFGFEAPDEILVDVIR NLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNSGD EMLVPAPDYPLWTAAVSLSSGNAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNP TGAVYSKELLMEIVEIARQNNLIIFADEIYDKILYDDAEHHSIAAMAPDLLTITFNGLSK TYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRLCANVPAQHAIQTALGGYQSISEFI MPGGRLYEQRNRAWELINDIPGVSCMKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEK VLLVQGSAFNWPWPDHVRIVTLPREDDLEMAINRFGRFLSGYHQ >gi|283548478|gb|GG730299.1| GENE 260 297079 - 298017 662 312 aa, chain + ## HITS:1 COG:STM2330 KEGG:ns NR:ns ## COG: STM2330 COG0583 # Protein_GI_number: 16765657 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 312 1 312 312 568 91.0 1e-162 MINANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFAR HGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFNNLQGVLTIGASDESADTILPFLLNR ISSVYPKLALDVRVKRNAYMVDMLKSQEVDLVVTTNRPGDFECLNLRTSPTHWYCAAEYI LQKGEPVPLVLLDDPSPFRDIVLATLNAAQIPWRLAYVASTLPAVRAAVKAGLGVTARPV EMMSPDLRVLGAADGLPPLPDTEYLLCCDPTTQNELAQVIFKSMQTYQNPWQYNQFTPEG GDDSLIVEGDFE >gi|283548478|gb|GG730299.1| GENE 261 298651 - 299088 486 145 aa, chain + ## HITS:1 COG:ECs3172 KEGG:ns NR:ns ## COG: ECs3172 COG0838 # Protein_GI_number: 15832426 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 3 (chain A) # Organism: Escherichia coli O157:H7 # 1 145 3 147 147 265 97.0 2e-71 MSTSTEIIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARARSKNVPFESGIDSVGTARL RLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWIGFVEAAIFIFVLLAGLVYLVRIGA LDWTPARSRRERMNPETNSIANRQR >gi|283548478|gb|GG730299.1| GENE 262 299104 - 299766 701 220 aa, chain + ## HITS:1 COG:STM2327 KEGG:ns NR:ns ## COG: STM2327 COG0377 # Protein_GI_number: 16765654 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 456 99.0 1e-128 MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLHDMVNWGRKNSIWPYNFG LSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP KWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKER RPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPDEI >gi|283548478|gb|GG730299.1| GENE 263 299864 - 301654 2170 596 aa, chain + ## HITS:1 COG:nuoC_2 KEGG:ns NR:ns ## COG: nuoC_2 COG0649 # Protein_GI_number: 16130221 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Escherichia coli K12 # 198 596 1 399 399 818 94.0 0 MTDLTAQDAVWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWVKREQLLEVGDFL KRLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIERNRDIMLKVALSENDLRV PTFTKLFPNANWYERETWEMFGIDIEGHPHLTRLLMPHTWQGHPLRKDYPARATEFDPFE LTKAKQDLEMEALTFKPEDWGMKRGTENEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIVD CVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITTPDRVN VIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDVVEAITGYRMHPAWFR IGGVAHDLPRGWDKLLRDFLDWMPKRLDSYEKAALRNTILKGRSQGVAAYGKKEALDWGC TGAALRATGIDFDVRKARPYSGYENFDFEVPVGGGVSDCYTRVMLKVEELRQSLRILEQC LNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMVEATKGIN SYYLTSDGSTMSYRTRIRTPSYAHLQQIPVAVRGSLVSDLIVHLGSIDFVMSDVDR >gi|283548478|gb|GG730299.1| GENE 264 301657 - 302157 555 166 aa, chain + ## HITS:1 COG:nuoE KEGG:ns NR:ns ## COG: nuoE COG1905 # Protein_GI_number: 16130220 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 24 kD subunit # Organism: Escherichia coli K12 # 1 166 1 166 166 335 97.0 2e-92 MHENQQPQTEAFELSAAEREAIEHEKHHYEDPRAASIEALKIVQKQRGWVPDGAIYAIAD VLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQT TFDGRFTLLPTCCLGNCDKGPNMMIDDDTHAHLTPEGIPELLERYK >gi|283548478|gb|GG730299.1| GENE 265 302154 - 303491 1620 445 aa, chain + ## HITS:1 COG:STM2324 KEGG:ns NR:ns ## COG: STM2324 COG1894 # Protein_GI_number: 16765651 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit # Organism: Salmonella typhimurium LT2 # 1 445 1 445 445 905 97.0 0 MKDIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLK GRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISA FALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYIC GEETALINSLEGRRANPRSKPPFPASSGAWGKPTCVNNVETLCNVPAILANGVEWYQNIS KSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFL TEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDG LPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE AGIKQSFSNTHQIGGIQPNLLKERW >gi|283548478|gb|GG730299.1| GENE 266 303564 - 306299 3056 911 aa, chain + ## HITS:1 COG:ECs3167 KEGG:ns NR:ns ## COG: ECs3167 COG1034 # Protein_GI_number: 15832421 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) # Organism: Escherichia coli O157:H7 # 2 911 1 910 910 1801 94.0 0 MLTMATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAE DTRGRLVMSCMTPATEGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDM TVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGADLGVYGAHD NVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNT SPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDLITLNAEQ AMQGAADILRQSKKVIGIGSPRASVESNFALRELVGADNFYTGIAQGEQERLQLALSVLR DGGIHTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVKGKAREMAAAQKVADWQIAA ILNIGQRAKHPLFVTNVDNTRLDDIAAWTYRAPVEDQARLGFAIAHALDNNAPAVDGIDR DLQNKIDVIVQALAGAKKPLIISGTNAGSAEVIQAAANVAKALKGRGADVGITMIARSVN SMGLGMIGGGSLDDALTELETGRADAVVVLENDLHRHASATRVNAALAKAPLVLVIDHQR TAIMENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPSYYDSKTIMLESWRWLHSLHS TVQSREVDWTQLDHVIDAVVEKLPQLAGIKDAAPDASFRIRGQKLAREPHRYSGRTAMRA NISVHEPRQPQDKDTMFAFSMEGNNQPSAPRSQIPFAWAPGWNSPQAWNKFQDEVGGKLR HGDPGVRLIEASAGGMDYFTTVPASFQAQDGQWRIAPYYHLFGSDELSQRAPVFQTRMPQ PYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMPGIAPVLAG ARLEDLQEAQQ >gi|283548478|gb|GG730299.1| GENE 267 306296 - 307273 1147 325 aa, chain + ## HITS:1 COG:STM2322 KEGG:ns NR:ns ## COG: STM2322 COG1005 # Protein_GI_number: 16765649 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Salmonella typhimurium LT2 # 1 325 1 325 325 593 98.0 1e-169 MSWITPDLIEILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQL VADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPNWVVADLNIGILFFL MMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIV NNQADIWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG EYIGIVTISALMVTLFFGGWHGPFLPPFVWFALKTAFFMMMFILIRASLPRPRYDQVMSF GWKVCLPLTLVNLLVTAAVILWQAQ >gi|283548478|gb|GG730299.1| GENE 268 307288 - 307830 690 180 aa, chain + ## HITS:1 COG:STM2321 KEGG:ns NR:ns ## COG: STM2321 COG1143 # Protein_GI_number: 16765648 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Salmonella typhimurium LT2 # 1 180 1 180 180 367 98.0 1e-102 MTLKELFVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRFRGRIVLTRDPDGEERC VACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF ELGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDGKDKGEAENEAKPIDVKSLLP >gi|283548478|gb|GG730299.1| GENE 269 307842 - 308396 773 184 aa, chain + ## HITS:1 COG:ECs3164 KEGG:ns NR:ns ## COG: ECs3164 COG0839 # Protein_GI_number: 15832418 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Escherichia coli O157:H7 # 1 184 1 184 184 313 97.0 2e-85 MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFSLGAYFAGALEIIVYA GAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLVVIVYAILGVNDQGID GTPISAKAVGISLFGPYVLAVELASMLLLAGLVVAFHVGREERSGEVLSNRTDDRAKRKT EEHA >gi|283548478|gb|GG730299.1| GENE 270 308393 - 308695 403 100 aa, chain + ## HITS:1 COG:ECs3163 KEGG:ns NR:ns ## COG: ECs3163 COG0713 # Protein_GI_number: 15832417 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Escherichia coli O157:H7 # 1 100 1 100 100 148 99.0 2e-36 MIPLQHGLILAAVLFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTDGQV MYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG >gi|283548478|gb|GG730299.1| GENE 271 308692 - 310533 2500 613 aa, chain + ## HITS:1 COG:STM2318 KEGG:ns NR:ns ## COG: STM2318 COG1009 # Protein_GI_number: 16765645 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Salmonella typhimurium LT2 # 1 613 1 613 613 1039 97.0 0 MNMLALTIILPFIGFVLLAFSRGRWSENLSATVGVGSIGLAALVTAFVGMDFFANGKQAV SVPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMFASWYMRGEEGYSRFFAYT NLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYSDPKNGAAAMKAFVVTRVGDVF LAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLA DAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEILHLVGIIGAITLVLAGFAALV QTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQ NIFKMGGLRKSIPLVYLCFLIGGAALSALPLITAGFFSKDEILAGAMANGHINLMVAGLV GAFMTSLYTFRMIFIVFHGKEQIHAHAGKGITHHLPLIVLMILSTFVGALIVPPLQGVLP ATTELEHGRVMTLEITSGIVAIAGILIAAWLWLGKRTLVTSIANSAPGRLLGTWWYNAWG FDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSI GAVVVLALLMVLR >gi|283548478|gb|GG730299.1| GENE 272 310785 - 312314 1964 509 aa, chain + ## HITS:1 COG:STM2317 KEGG:ns NR:ns ## COG: STM2317 COG1008 # Protein_GI_number: 16765644 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Salmonella typhimurium LT2 # 1 509 1 509 509 881 99.0 0 MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALGLQLWLQGGYSLTQSAGI PQWQSEFVLPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWNEIEKYQGFFHLNL MWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQA SGLVMLIAILALVFVHYKATGVWTFNYEELLNTPMSHGVEYLLMLGFFIAFAVKMPVVPL HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFY GAWMAFNQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCG QLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVCTLGMPGTGNFVGEFMILFGSYQVVPV ITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIILLLVVLLVLLGF YPQPILDTSHSAMSNIQQWFVNSVTTTRP >gi|283548478|gb|GG730299.1| GENE 273 312321 - 313778 2087 485 aa, chain + ## HITS:1 COG:STM2316 KEGG:ns NR:ns ## COG: STM2316 COG1007 # Protein_GI_number: 16765643 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Salmonella typhimurium LT2 # 61 485 1 425 425 672 95.0 0 MTITPQHLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIGLNAALVSLWFVGQAGA MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYDDNREEFYLLVLIAALGGILLA NANHLAALFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYAQ SGNLSFVALGKSLGDGMLHEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVST FLATASKIAIFGVVMRLFLYAPVGDSEAVRTVLGVIAFASIIFGNLMALSQTNIKRLLGY SSISHLGYLLVALIALQSGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLF SYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQANLWWLVAAVVVGSAI GLYYYLRVAVSLYLSAPQQMNRDAPSNWQYSAGGIVVLISALLVLVLGIYPQPLISIVQL ATPLM >gi|283548478|gb|GG730299.1| GENE 274 313836 - 314840 1257 334 aa, chain - ## HITS:1 COG:STM2314_1 KEGG:ns NR:ns ## COG: STM2314_1 COG0835 # Protein_GI_number: 16765641 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Salmonella typhimurium LT2 # 1 189 1 189 189 359 94.0 5e-99 MNNFQKDIDDRTNLTLSNRFELLLFRLGKSIEEQKSELFGINVFKLREIVPMPTFTRPAG MKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYARSVQAFAVESVENIMRLD WQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQILYDIVPSNHDLRATDLKTSK FNITPGAVAIVAEDSKVARAMLEKGLNAMEIPHQMHVTGKDAWDKIQQLSAEAQAEGKPI TEKIALVLTDLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHVRRVNADGYV AKFEVNELSSVIQEVMERTAKGISGPLVSRQLSA >gi|283548478|gb|GG730299.1| GENE 275 314905 - 315822 642 305 aa, chain - ## HITS:1 COG:elaC KEGG:ns NR:ns ## COG: elaC COG1234 # Protein_GI_number: 16130203 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Escherichia coli K12 # 1 305 7 311 311 516 79.0 1e-146 MELLFLGTSAGVPTRSRNVTAILLNLQHPTQPGLWLFDCGEGTQHQMLATPFNPGKLDRI FISHLHGDHLFGLPGLLCSRSMAGNVKPLTLYGPKGLREFTETALRLSGSWTDYPLDIVE ITAGEIVDDGLRKVTAYPLEHPLECYGFRIEEHDKPGALDASALKAAGVKSGPWFQDLKA GKTIVLEDGRTINGADFLAPATRGKSVAIFGDTGPCASAIELARGVDLMVHETTLDSSME EKANSRGHSSTRQASLLALKAGAGRLIITHVSSRYDERGCQRLLEECKAIFPDTELAHDL AIFTV >gi|283548478|gb|GG730299.1| GENE 276 315890 - 316351 531 153 aa, chain + ## HITS:1 COG:ECs3155 KEGG:ns NR:ns ## COG: ECs3155 COG2153 # Protein_GI_number: 15832409 # Func_class: R General function prediction only # Function: Predicted acyltransferase # Organism: Escherichia coli O157:H7 # 1 153 1 153 153 261 79.0 3e-70 MIHWQDLHHAKLSTSELYAILQLRCTVFVVEQKCPYQDVDGDDLVGENRHILGWHNGELV AYARILKSDDDLEPVVIGRVIVSEALRGAKLGQQLMTQTLASCAQHWPHKALYLGAQAHL QSFYARFGFVPVTDIYDEDGIPHIGMAREGCQA >gi|283548478|gb|GG730299.1| GENE 277 316415 - 316720 306 101 aa, chain + ## HITS:1 COG:STM2311 KEGG:ns NR:ns ## COG: STM2311 COG4575 # Protein_GI_number: 16765638 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 84 3 86 103 129 83.0 1e-30 MSFQSYESRIDDDLELLSETLEEVLRSSGDPADQKYLELKARAERALEEVRNRVSHASDN YYFRAKKAVCRADDYVHEKPWRGIGVGATVGLVMGLLLARR >gi|283548478|gb|GG730299.1| GENE 278 316825 - 318123 880 432 aa, chain + ## HITS:1 COG:STM2310 KEGG:ns NR:ns ## COG: STM2310 COG1169 # Protein_GI_number: 16765637 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Salmonella typhimurium LT2 # 1 432 1 431 431 704 81.0 0 MQSITTALESLMRHLSHEIPAAPGIRIYDIPFPLNDAFDALGWLASQPVWPQFYWQQRNG DEEAAVLGAVATFSSLGSAQQFLRQHDNQPDLRIWGLNAFEPRHGNLLLPRLEWRRCAGV ASLRLHLYSEVSLREDAACAVEFISTLAHVKPVPALRLSLTGEQHWPDKAGWTDLITLAT QTINREALDKVVLARATDLQFSQPVNAAAVMASSRRLNLNCYHFFMAFSADSAFLGSSPE RLYRRRGTALRTEALAGTVANHAEDHRAWQLGDWLMKDDKNQRENMLVVEDICQRLQGCT QTLDVLPPQVLRLRKVQHLRRCIWTELNQADDTLCLMQLQPTAAVAGIPRELAREFIQQN EPFKREWYAGSAGYLSLRQSEFCVSLRSAKINANVVRLYAGAGIVRGSDPEQEWQEIDNK AAGLRTLLQMEG >gi|283548478|gb|GG730299.1| GENE 279 318211 - 319881 1584 556 aa, chain + ## HITS:1 COG:STM2309 KEGG:ns NR:ns ## COG: STM2309 COG1165 # Protein_GI_number: 16765636 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Salmonella typhimurium LT2 # 1 556 1 556 556 1043 93.0 0 MSVSAFNRRWAAVILEALTRHGVRHVCIAPGSRSTPLTLAAAENPAFIHHTHFDERGLGH LALGLAKVTRQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAI RQAGMFASHPSQTLSLPRPTQDIPASWLVSTIDNALAALHSGAVHINCPFAEPLYGDMDE TGIAWQQRLGDWWQDDKPWLREARRLESDKQRDWFFWRQKRGVVIAGRMSAEEGKKVAQW AQMLGWPLIGDVLSQTGQPLPCADLWLGNAKAVTELEQAQIVVQLGSSLTGKRLLQWQAS CDPQEYWIVDNIEGRLDPAHHRGRRLVAKVGDWLELHPAEKRQPWCVEIPRLAQLAWQAV EARRDAFGEAQLAHRIREYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDG LLSTAAGVQRASAKSTLAIVGDLSALYDLNALALLRQVSAPFVLIVVNNNGGQIFSLLPT PQSERERFYLMPQNVHFEHAAAMFNLKYHRPENWEQLENALTNAWRTPAATVIELVVNET DGAQTLQQLLAQVSHL >gi|283548478|gb|GG730299.1| GENE 280 319878 - 320636 464 252 aa, chain + ## HITS:1 COG:STM2308 KEGG:ns NR:ns ## COG: STM2308 COG0596 # Protein_GI_number: 16765635 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 1 251 1 251 252 395 77.0 1e-110 MILHAQANESQSGLPWLVFLHGFSGDCREWQTVGEAFQDYSRLYIDLPGHGGSADIKVSG FDDVSALLRSTLLSYNILNYWLVGYSLGGRVAMMAACQEMPGLCGVVVEGGHPGLQSEEA RVQRQLSDGRWAARFRAEPLREVFNDWYQQPVFSSLSAAQREALVDLRSQNNGQTLAAML EATSLAVQPDLRARLTARAFPFYYLCGERDDKFRALATEMSVPNHVIRNAGHNAHRDNPA GVVACLAQILRR >gi|283548478|gb|GG730299.1| GENE 281 320651 - 321508 920 285 aa, chain + ## HITS:1 COG:STM2307 KEGG:ns NR:ns ## COG: STM2307 COG0447 # Protein_GI_number: 16765634 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Salmonella typhimurium LT2 # 1 285 1 285 285 590 97.0 1e-168 MIYPDETMLYAPVEWHDCSAGYTDILYEKSTDGIAKITINRPQVRNAFRPVTVKEMIQAL ADARYDDNIGVIILTGAGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPK PVVAMVAGYSIGGGHVLHMMCDLTIAAENAVFGQTGPKVGSFDGGWGASYMARIVGQKKA REIWFLCRQYDAKAALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADC DGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP >gi|283548478|gb|GG730299.1| GENE 282 321508 - 322470 975 320 aa, chain + ## HITS:1 COG:STM2306 KEGG:ns NR:ns ## COG: STM2306 COG1441 # Protein_GI_number: 16765633 # Func_class: H Coenzyme transport and metabolism # Function: O-succinylbenzoate synthase # Organism: Salmonella typhimurium LT2 # 1 320 1 320 320 561 90.0 1e-160 MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLRDGERAGWGEISPLPGFSQESWEEAQ TELLAWVNGWLQGDSSLPQLPSVAFGASCALAELAGVLPQDADYRAAPLCTGDPDDLVLQ LADMPGEKVAKIKVGLYEAVRDGMVANLLLEAILELHLRLDANRAWTPLKAQQFAKYVNP EYRGRIAFLEEPCKTRDDSRAFARETGIAIAWDESLREADFTFEAEEGVRAVVIKPTLTG SLDKVREQVAAAHALGLTAVISSSIESSLGLTQLARIAAWLTPQTIPGLDTLSLMQRQQV RTWPGSALPCIDVDALERLL >gi|283548478|gb|GG730299.1| GENE 283 322467 - 323915 974 482 aa, chain + ## HITS:1 COG:STM2305 KEGG:ns NR:ns ## COG: STM2305 COG0318 # Protein_GI_number: 16765632 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 26 472 3 449 455 728 81.0 0 MTMPDMPNDARLSGLQAQPLSGNPDFSDWPWRHWRQVRAQAPALRLNDEVLSWSELCTRV DRLASGFAAQGLEEGDGVLLRAWNHPRALLAWLALLQCGARVLPVNPQLPQSLLDALVPD LTLRFALDLEAANALSGLSPLQVQALPGAHAAAWSPQRLSTMTLTSGSTGLPKAAVHTCQ AHLASAQGVLSLMPFGAEDDWLLSLPLFHVSGQGILWRWLLAGARMTVCDKQPLEQMLVG CTHASLVPTQLWRLLVNNTPVSLKAVLLGGAAIPVELTEQAREQGIRCWCGYGLTEFAST VCAKEADGLADVGSALAGREVRIVDDEVWLRAASMAQGYWRNGQLTPLVNAEGWFATRDR GVLQDGRLAIVGRMDNLFFSGGEGIQPEEVERVIAAHPQVLQAFIVPIEDKEFGHRPVAV VEYDANAGDINLAEWVKDKLARFQQPVCWLTLPPELKAGGIKISRRALSDWVSATSLTLR KH >gi|283548478|gb|GG730299.1| GENE 284 324011 - 324274 208 87 aa, chain + ## HITS:1 COG:no KEGG:SARI_00595 NR:ns ## KEGG: SARI_00595 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 82 1 82 85 103 62.0 3e-21 MEWHVKKSCCHKKAGKLYIVLCDSGGSLKMLAEAQASVGVKPGDLLSPLKDAQYCVNRNA SQVIKIIDARQYICDEWERLLKLSEEK >gi|283548478|gb|GG730299.1| GENE 285 324277 - 324663 416 128 aa, chain - ## HITS:1 COG:yfbJ KEGG:ns NR:ns ## COG: yfbJ COG0697 # Protein_GI_number: 16130193 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 127 95 221 222 138 65.0 2e-33 MGIFWGLCSVIITSAAQLSLGFAMDNLPPMLQPLTFISAVFSLSVGAFALYAGLAGYLLS VICWHKALHRLALSKAYALLSLSYVLVWVASMTLPGWQGTFSLQALVGVLCIMAGLMTIF LPSHQRQS >gi|283548478|gb|GG730299.1| GENE 286 324663 - 324998 279 111 aa, chain - ## HITS:1 COG:Z3516 KEGG:ns NR:ns ## COG: Z3516 COG0697 # Protein_GI_number: 15802807 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 EDL933 # 1 111 1 111 111 114 72.0 3e-26 MIWIALVLASLLSVCGQLCQKQATRPVPLRARKRHITQWIGLALASLGLAMLLWLVVLQN IPVGIAYPMLSLNFVWVTLAAWKIWREPVATRHWLGVGLIITGIFILGSAV >gi|283548478|gb|GG730299.1| GENE 287 324995 - 326653 1595 552 aa, chain - ## HITS:1 COG:ECs3145 KEGG:ns NR:ns ## COG: ECs3145 COG1807 # Protein_GI_number: 15832399 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family # Organism: Escherichia coli O157:H7 # 4 552 3 550 550 823 75.0 0 MKPAARYTLAFVAFIALYFILPINSRLLWQPDETRYAEISREMLTSGDWIVPHFLGLRYF EKPIAGYWLNSIGQWLFGANNFGVRAGAILSTLLTALLVAWLAMRLWQDKRTAVLSSVIF LTFFSVYSIGTYAVLDPIIALWLTAGMCCFWEGMQATTRTRRIIAFLLLGLTCGMGVMTK GFLALAVPVLSVLPWVFAQKHWKDLIIYGLLAVVGCVVIVLPWGVAIAQREPDFWHYFFW VEHIQRFALDDAQHKAPVWYYIPVLVAGALPWLGLLPGALRTGWRERDVPRSALYLLSWI IMPILFFSIAKGKLPTYILSCFAPLAILTARFGLQAAEKGSTALRVNGWINVLFGVAGII ATFIFSTLGPLKTPVWSHIETYKVFCAWGIFLTWTFFGWYTLNNREQNWQFAALCPLGLA LLFGFSIPDRVMESKQPQFFVEMTKESLESSRYILTDSVGVAAGLAWSLKRDDIIMYAQT GELKYGLNYPDALGRFVSREDFANWLAQHRQQGNITLVLSIDKDEDINQLAIPPADSIDN QGRLVLIQYRPK >gi|283548478|gb|GG730299.1| GENE 288 326650 - 327552 640 300 aa, chain - ## HITS:1 COG:STM2300 KEGG:ns NR:ns ## COG: STM2300 COG0726 # Protein_GI_number: 16765627 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Salmonella typhimurium LT2 # 1 297 1 297 299 476 77.0 1e-134 MTKVGLRIDVDTFRGTREGVPRLLETLNRHNVRASFFFSVGPDNMGRHLWRLVKPQFLWK MLRSNAASLYGWDILLAGTAWPGKEIGQANATLIAQTALIHETGLHAWDHHAWQARSGNW NDKQLIDDISQGITALEAIIGQPVTCSAAAGWRADDRVVHAKEAFHLRYNSDCRGTSLFR PVLASGKTGTPQIPVTLPTWDEVVGQEVQAVDFNAYILSHIQMSRGTPVYTIHAEVEGIA FHQNFDELLTRAVDMGITFCPLGDLLPDDIGSLPTGQIVRGKIPGREGWLGCQQPMSVIK >gi|283548478|gb|GG730299.1| GENE 289 327549 - 329531 1968 660 aa, chain - ## HITS:1 COG:yfbG_2 KEGG:ns NR:ns ## COG: yfbG_2 COG0451 # Protein_GI_number: 16130190 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 306 660 1 355 355 690 89.0 0 MKAVVFAYHDMGCQGVQALLDAGYEIAAIFTHTDTPGEKAFFGSVSRLAASAGIPVYAPD DVNHPLWIERISQLAPDVIFSFYYRHLLSEEILSLAPAGAFNLHGSLLPKYRGRAPLNWV LVNGETETGVTLHRMVKRADAGAIIAQQRVAISPDDVALTLHHKLCQAARQLLEQALPAI KTEDYAERPQQEADATCFGRRTPEDSFLDWNKPAAELHNQVRAVSDPWPGAFSYVGTQKF TVWSSRVCTNDLAAQPGTVISVAPLLIACIDGALEIITGQAGDGIAMQGSQLAQVLGLVP GSRLNSQSVTTSKRRTRVLILGVNGFIGNHLTERLLQEDNYEVYGLDIGSDAIGRFLQHP RFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYC VKYRKRIIFPSTSEVYGMCTDKVFDEDSSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK EGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDI RDGIEALYRIIENEGGRCDGEIINIGNPDNEASIQELAEMLLTCFEKHPLRNHFPPFAGF RNVESSTYYGKGYQDVEHRKPNIRNAKRCLNWEPTIEMQETVEETLDFFLRSVDITEHTS >gi|283548478|gb|GG730299.1| GENE 290 329528 - 330511 1099 327 aa, chain - ## HITS:1 COG:yfbF KEGG:ns NR:ns ## COG: yfbF COG0463 # Protein_GI_number: 16130189 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli K12 # 1 321 1 321 322 583 87.0 1e-166 MFEATPIKKVSVVIPVFNEQESLPELIRRTGAACEKLGKDYEILLIDDGSSDRSAQLMMD ASLAPNSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVATADEG FDVVGTVRQNRQDSVFRKTASRMINHLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCQER STFIPILANIFARRATEIPVHHAEREFGDSKYSFMRLINLMYDLVTCLTTTPLRMLSLLG SAIAATGFTLSVLLVVLRLTLGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEYIGRIYN DVRARPRYFVQHVIRPQTTQSTEENRA >gi|283548478|gb|GG730299.1| GENE 291 330514 - 331653 883 379 aa, chain - ## HITS:1 COG:STM2297 KEGG:ns NR:ns ## COG: STM2297 COG0399 # Protein_GI_number: 16765624 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Salmonella typhimurium LT2 # 1 379 7 385 385 655 83.0 0 MSDFLPFSRPAMGAEELAAVKAVLDSGWITTGPQNQRLEEAFCQLTGNQHAVAVCSATAG MHITLMALGIGANDEVITPSMTWVSTLNMIVLLGATPVMIDVDRDTLMVTPEQIEAAITP RTKAIVPVHYAGAPADLDAIYAIGERYGIPVIEDAAHAVGTLYKNRHVGARGTAIFSFHA IKNITCAEGGLIVTDDGQLAQRLRSLKFHGLGVDAFDRQTYGRAPQAEVLAPGYKYNLTD INAAIALVQLKKLEQLNSRRAQIAQEYQQALADTPFQPLSLPQWSHVHAWHLFIIRVDEA RCGLSRDALMEALKARNIGTGLHFRAAHTQKYYRERFTTLSLPNTEWNSTRICSLPLFPD MTAADTQRVITALREIAGQ >gi|283548478|gb|GG730299.1| GENE 292 331947 - 332372 427 141 aa, chain - ## HITS:1 COG:ECs3139 KEGG:ns NR:ns ## COG: ECs3139 COG0494 # Protein_GI_number: 15832393 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 270 90.0 4e-73 MRQRTIVCPLIQNDGCYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREVREELGE QLVLAEITPWTFSDDIRTKTYADGSQEEIYMIYLIFDCVAANREVNINEEFQAFAWVKPE DLAHYDLNIATRKTLTLKGIL >gi|283548478|gb|GG730299.1| GENE 293 332689 - 333231 733 180 aa, chain + ## HITS:1 COG:no KEGG:SeHA_C2534 NR:ns ## KEGG: SeHA_C2534 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 180 45 224 224 305 90.0 6e-82 MKKSLMLGFAGMLFVSASASAISISGQAGEDYTNLGFGMGTESSGLAVSGNWMHNDDDGD AAGLGLGLNIPLGPFLATVGGKGVYTNPNDGDEGYAAAVGGGLQWPIGDSFRLFGEYYYS PDSLSSGIDSYEEANAGARLTIMRPLSIEAGYRYLNLAGKDGNRDNAIADGPYVGVNASF >gi|283548478|gb|GG730299.1| GENE 294 333311 - 334507 1062 398 aa, chain + ## HITS:1 COG:yfaY KEGG:ns NR:ns ## COG: yfaY COG1058 # Protein_GI_number: 16130184 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Escherichia coli K12 # 1 398 1 398 400 707 88.0 0 MLHVEMLSTGDEVLHGQIVDTNAAWLADFFFNQGLPLTRRNTVGDNLDDLVAILRERSEH ADVLIVNGGLGPTSDDLSAQAAATAKGEGLVLHEAWLAEMERYFRDRGRVMAPSNRKQAE LPASAEFINNPVGTACGFAVKLNRCLMFFTPGVPSEFKVMVEHEILPRLRERFSLPQPPL CLRLTTFGRSESDLAQSLDPLPLPPGVTMGYRSSMPIIELKLTGPDSQREAMLALWPEVK RVAGQNMIFEGTEGLPAQIARTLQERQYSLTLSEQFTGGLVALQLSRAHAPLLASEVVPS QEETLAQTAHWITERRGKHYAGLALAVSACESEHINFALATPDGTHALRVRLNANRYSLP IRQEVCAMMALNMLRRWLNGQDIASEHGWIEVVESLTI >gi|283548478|gb|GG730299.1| GENE 295 334546 - 335229 461 227 aa, chain - ## HITS:1 COG:ECs3129 KEGG:ns NR:ns ## COG: ECs3129 COG5464 # Protein_GI_number: 15832383 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 227 91 305 308 292 65.0 3e-79 MAFRLMRYAIAAMQHHLDAGNKTLPLVIPMLFYHGQQSPYPWSLNWLDEFDDPQLARQLY SEAFPLVDITVIPDDEIAQHRRVALLELMQKHIRDRDLMGLVDRLVSLLVTSTANDSQLQ TLFNYLLRYGDVSHVSAFIREVAERSPHHKERLMTIAERLRQEGHHHGLQEGIRQGLEQG LEQGLEQGVQKGTQEEALRIARMMLENGIDHNLVQLITGLLPGDVTA >gi|283548478|gb|GG730299.1| GENE 296 335214 - 335531 114 105 aa, chain - ## HITS:1 COG:ECs3129 KEGG:ns NR:ns ## COG: ECs3129 COG5464 # Protein_GI_number: 15832383 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 99 1 106 308 140 64.0 4e-34 MDKSTTSTPHDAVFKKIMSYPEMARDFLDIHLPAALREICDLQTLKLEPGSFIEQDLRAY YSDVLWSLKTREGLGYIYCVIEHQSTAVQRYSGTAVQRYSIWHFA >gi|283548478|gb|GG730299.1| GENE 297 335715 - 336905 1199 396 aa, chain - ## HITS:1 COG:STM2286 KEGG:ns NR:ns ## COG: STM2286 COG0247 # Protein_GI_number: 16765613 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Salmonella typhimurium LT2 # 1 396 1 396 396 804 96.0 0 MSDTRFESCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCK RCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKP VRQLLDYALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYQDQVAFFHGCFVNYNHPQLGK DLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAVSNVASLREAIDGKGIPVIAT SSTCTFALRDEYPEVLDVDNTGLREHIELATRWLWRKLDEGKTLPLKTLPLKVVYHTPCH MEKMGWTLYTLELLRQIPGLELTVLDSQCCGIAGTYGFKKENYPTSQSIGAPLFRQIEES GADIVVTDCETCKWQIEMSTSLRCEHPITLLAKALG >gi|283548478|gb|GG730299.1| GENE 298 336902 - 338161 1054 419 aa, chain - ## HITS:1 COG:STM2285 KEGG:ns NR:ns ## COG: STM2285 COG3075 # Protein_GI_number: 16765612 # Func_class: E Amino acid transport and metabolism # Function: Anaerobic glycerol-3-phosphate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 419 1 419 419 698 84.0 0 MKFDTVIIGGGLAGLLCGLQLQKSGLRCAIVTRGQSALHFSSGSLDLLSNLPDGQPVTEI EAGLNALRTQAPAHPYSTIGTQNVLQLAQQAQTLLEECGTHLQGKVRQSHQRVTPLGTLR STWLSSPEVPVWPLSAQRICVVGISGLLDFQAHLAAASLRQRNLSVETAEIDLPELDVLR DNPTEFRAVNIARLLDNEDKWSLLYDALLPLAKTCDMIIMPACFGLADERLWQWLNERLP CSLTLLPTLPPSVLGMRLHNKLQRQFVRQGGVWMPGDEVKKITCQDGVISEIWTRNHADI PLRPRFAVLASGSFFSSGLIATREAIHEPILGLDVQQTATRAEWYERDVFDPQPWQQFGV TTDATLRPSLAGKTVENMYAIGSVLGGFDPIAQGCGGGVCAVSALHAAHHIAKRAGDQQ >gi|283548478|gb|GG730299.1| GENE 299 338151 - 339779 1642 542 aa, chain - ## HITS:1 COG:STM2284 KEGG:ns NR:ns ## COG: STM2284 COG0578 # Protein_GI_number: 16765611 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 542 1 542 542 1025 95.0 0 MKTRDSQTSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARY AVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDELSFQATFIRACEEAGIRAEA IDPQQARIIEPSVNPQLIGAVKVPDGTVDPFRLTAANMLDAREHGAVILTAHEVTGLIRE GATVCGVNVRNHLTGEMQSLHAPVVVNAAGIWGQRIAEYADLSIRMFPAKGSLLIMDHRI NQHVINRCRKPSDADILVPGDTISLIGTTSQHIDYNDIDSNRVTAEEVDILLREGEKLAP IMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLFDHAQRDGLDGFITITGGKLMTYRL MAEWATDAVCRKLGNSQPCTTADTALPGSQESTEHTLKRVISLPAPLRGSAVYRHGDRTP AWLSEGRQHRSLVCECEAVTAGEVQYAVENLTVNSLLDLRRRTRVGMGTCQGELCACRAA GLLQRFNVTTAAQSITQLSDFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEHQD EI >gi|283548478|gb|GG730299.1| GENE 300 340050 - 341408 1676 452 aa, chain + ## HITS:1 COG:STM2283 KEGG:ns NR:ns ## COG: STM2283 COG2271 # Protein_GI_number: 16765610 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Salmonella typhimurium LT2 # 1 452 1 452 452 877 98.0 0 MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGF SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI AIMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGM AWFNDWKAALYMPAFGAIVVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEEELT AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPNVDMACMIIIGFL IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM IGGSVLAVILLVVVMIGEKRHHEEMQLKRNGG >gi|283548478|gb|GG730299.1| GENE 301 341412 - 342479 1245 355 aa, chain + ## HITS:1 COG:STM2282 KEGG:ns NR:ns ## COG: STM2282 COG0584 # Protein_GI_number: 16765609 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Salmonella typhimurium LT2 # 1 354 1 354 356 668 92.0 0 MKTTLKGLSVALMLAGMVVSSAAVAADQIVIAHRGASGYLPEHTLPAKAMAYAQGADYLE QDLVMTKDDHLVVLHDHYLDRVTDVAERFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDI ENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEMKAPWFHHQEGK DIAAKTLEVLKKYGYTSKNDKVYLQCFDVAELKRIKNELEPKMGMDLNLVQLIAYTDWNE TQEKKPDGSWVNYNYDWMFKPGAMKQVAQYADGIGPDYHMLVDEKSKKGHISLTGMVQDA HQNQMVVHPYTVRADQLPDYATDVNQLYDILYNKAGVDGLFTDFPDKAVKFLNKE >gi|283548478|gb|GG730299.1| GENE 302 342540 - 343418 595 292 aa, chain - ## HITS:1 COG:STM2281 KEGG:ns NR:ns ## COG: STM2281 COG0583 # Protein_GI_number: 16765608 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 292 1 292 292 480 81.0 1e-135 MTLTQIHALLTVLECGGFTEAGKRLYMTQSAVSQAISALEEELGVECLIRERRKDIQLTP VGRRILPHLRTLVSETNAVKEIAEQERKNPARTLRIGCFPSACACILPGIIHHFEQHHPH IKIIPYEENSTAIVDSLRSGDIDAGFVHFPVTGMYCVPAYRDKFTVVVPESHPLAANTAI SVEQLVGEPLIISKGRYELSIMALFKEKGIEPVIKYEFNHPDTAMSFIRQGLGIALLPEL TLKAVGGEIRSVALEPTFYRQISLLAKEPPVDGSPLFLLQACMETLTADGLI >gi|283548478|gb|GG730299.1| GENE 303 343578 - 344768 1140 396 aa, chain + ## HITS:1 COG:STM2280 KEGG:ns NR:ns ## COG: STM2280 COG0477 # Protein_GI_number: 16765607 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 396 1 396 396 622 89.0 1e-178 MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLHATPDKAGLLVTFFLGAAIVV RPFAGQWVGKYSNKTILVLSSLAFLIVTALYPVCHSIESLLFIRVLHGVTFGVITTVKGT ISARLIPASRRGEGISFFSLAMGLAMVVGPWVGLNMARWGAFTTAFWLCSAVAVLGIILS LVIAVPPVLRHSDGSKPTLGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELDLM AAASNFLLCYAICLMICRTFTGNICDKKGPKYVVYPCLLAFTVGLVALGYTNGSIMMIIA GGLIGIGYGSVTPVFQTQIISSVEPHKIGIANSLFFNAMDAGMAIGAFIMGMMVEGVGYR AIYLVGALLVVLAGALYIAQMKRRGAMPLVSAHEVH >gi|283548478|gb|GG730299.1| GENE 304 344772 - 345026 185 84 aa, chain - ## HITS:1 COG:STM2279 KEGG:ns NR:ns ## COG: STM2279 COG0633 # Protein_GI_number: 16765606 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Salmonella typhimurium LT2 # 1 84 1 84 84 156 95.0 1e-38 MGRVTLRISGTQLLCQDEHPSLLAALESHNVEVEYQCREGYCGSCRTRLVAGQVDWIAEP LAFIQPGEILPCCCRARGDIEIEL >gi|283548478|gb|GG730299.1| GENE 305 345026 - 346156 1552 376 aa, chain - ## HITS:1 COG:STM2278 KEGG:ns NR:ns ## COG: STM2278 COG0208 # Protein_GI_number: 16765605 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Salmonella typhimurium LT2 # 1 376 1 376 376 752 99.0 0 MAYTTFSQTKNDQLLEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDR IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHS RSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNG KTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEA LHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGL NKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVG QIDSEVDTDDLSNFQL >gi|283548478|gb|GG730299.1| GENE 306 346269 - 348230 2501 653 aa, chain - ## HITS:1 COG:STM2277 KEGG:ns NR:ns ## COG: STM2277 COG0209 # Protein_GI_number: 16765604 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 653 109 761 761 1330 96.0 0 MVEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYES AQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLI ECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTA VKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLL KGGDITLFSPSDVPGLYDAFFADQDEFERLYTQYENDDSIRKQRVKAVELFSLMMQERAS TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSAFN LGAINSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLAKNG KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYSQGILPIDTYKKDLD AISNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASK DGILRQVVPDYEHLHDAYELLWEMPSNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGK VPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDSQDDLVPSIQDDGCESGACKI >gi|283548478|gb|GG730299.1| GENE 307 348262 - 348555 188 97 aa, chain - ## HITS:1 COG:STM2277 KEGG:ns NR:ns ## COG: STM2277 COG0209 # Protein_GI_number: 16765604 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 94 1 94 761 185 94.0 2e-47 MNQSLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHE TIIKAAADLISREAPDYQYLAARLAIFHLRKKSLRRV >gi|283548478|gb|GG730299.1| GENE 308 349008 - 349736 938 242 aa, chain - ## HITS:1 COG:STM2276 KEGG:ns NR:ns ## COG: STM2276 COG2227 # Protein_GI_number: 16765603 # Func_class: H Coenzyme transport and metabolism # Function: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase # Organism: Salmonella typhimurium LT2 # 1 240 1 240 242 461 92.0 1e-130 MNAEKPPVTHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYITERSGGLFGKKV LDVGCGGGILAESMAREGATVTGLDMGSEPLQVAKLHALESGIQVEYVQETVEEHAEKHA HQYDVVTCMEMLEHVPDPQSVVSACARLVKPGGEVFFSTLNRNGKSWLMAVVGAEYILRM VPKGTHDVKKFIKPAELLQWVDQTVLKERHMTGLHYNPLTNSFKLGPGVDVNYMLHTSAR ID >gi|283548478|gb|GG730299.1| GENE 309 349895 - 352531 3339 878 aa, chain + ## HITS:1 COG:STM2272 KEGG:ns NR:ns ## COG: STM2272 COG0188 # Protein_GI_number: 16765599 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Salmonella typhimurium LT2 # 1 868 1 868 878 1606 97.0 0 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN KAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM RYTEIRMSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMAT NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNV SAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE LLEQIAELLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVV VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTAL TEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG VRGIKLAESDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN GSVVGAVQVEDTDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVA EPVDDEELDSIDGSAAEGDDDIAPEAESDDDAADDAEE >gi|283548478|gb|GG730299.1| GENE 310 352889 - 353410 414 173 aa, chain + ## HITS:1 COG:STM2750 KEGG:ns NR:ns ## COG: STM2750 COG3730 # Protein_GI_number: 16766062 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Salmonella typhimurium LT2 # 2 168 3 169 173 224 68.0 5e-59 MIVEIAEGFIHLFQSAGKIFSGMIVSTIPMLITLILTVNFIMKLIGQQRMEKVATLMGKS KILTYGILPSFAWFFLSSPGALTMGKFLPERCKPAYQDALGSTVHPLTSLFPHIVPSELF IWLGVAAGITRLDLPVADLALRYIAAGILLGFIRGFLTEYIFTRLEKRELNQE >gi|283548478|gb|GG730299.1| GENE 311 353420 - 353818 262 132 aa, chain + ## HITS:1 COG:STM2751 KEGG:ns NR:ns ## COG: STM2751 COG3731 # Protein_GI_number: 16766063 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Salmonella typhimurium LT2 # 3 122 2 119 124 63 34.0 8e-11 MKVLFSADVVKAGKKVEEGLLSGMLITFNDRAPEDYLDYVLVIKNIVCNSAPLQKTANYV LQINNQIWGITCWGDAAWQNLCELGHMTVVFDGAEKPIAYGALHVKSDCPPAVNELTGPL TIMRKTDENRAD >gi|283548478|gb|GG730299.1| GENE 312 353799 - 354812 1246 337 aa, chain + ## HITS:1 COG:STM2752 KEGG:ns NR:ns ## COG: STM2752 COG3732 # Protein_GI_number: 16766064 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Salmonella typhimurium LT2 # 1 336 1 326 326 324 54.0 1e-88 MKTVLIKKGHSGIGDDMYLSRDTSKVILSLTGKSIDPIAKKLGEMLEMRVVNGFDAMPDD KKILCVVINCGGSLRCGIYPQKRIKTINILPTGAMGPLAKYITEDIYISDVSSESLSLIE TLNQPVTAQEVDVVEPLPAGDASVAVSRQGDTKPRGSATNTALELMTRFATGIGNFVSLL YTSARESVELCIKNVIPFMAFISVLIALVQETAIGQWAGNALSPLAGSLTGLFVIAIICG LPFISPILAPGAAIAQVVGVLVGTLIGSGVVSPLMALPALFAINVQVGADFIPVGLSMQE AKEKTIRLGVPAFLLSRMITAPLAVAIGYLFSFGLFN >gi|283548478|gb|GG730299.1| GENE 313 354824 - 355840 774 338 aa, chain + ## HITS:1 COG:STM2753 KEGG:ns NR:ns ## COG: STM2753 COG0673 # Protein_GI_number: 16766065 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Salmonella typhimurium LT2 # 1 333 1 332 337 362 50.0 1e-100 MNKINAAVVGAGIYGKHHINAYHYNPWVNLVGFCEINPEIRASVAQEFHIPGFASLAELF AATQVDLVSIATPDPFHFDATIESITAGKHVLIEKPMATTSAECREIIRCAAEHGVKIGV DYHKRWDGMAQHIHHELLKPETGQVLRGYMSMDDIIDVPKNWLSWANESSPVHFLGTHCF DLIRYYMNGANAVSVYAIGQKKKLVAEGIDSWDTIQSFVTFENGAQWTVEVGWCLPPTFP KANDGRSFVITENNYYRADAQLRGYEMFTPQRSATPNYNFINYVNNKASGYGIQPIHDFV EHILFDTPYLATAEDGLQATLICEAVHHSLSTGNIVQL >gi|283548478|gb|GG730299.1| GENE 314 355933 - 356688 646 251 aa, chain - ## HITS:1 COG:no KEGG:Entcl_1492 NR:ns ## KEGG: Entcl_1492 # Name: not_defined # Def: transcriptional regulator, RpiR family # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 251 1 251 251 407 84.0 1e-112 MNIIEQLQLLVKTGSHTEQTISRYILATLSGAEKLTSTAISKKTHTSQPSIVRFAQALGY TGFTSFKYDLIKCLRSEPAALLPAQAARNNIILGEFINNNNPAAINTFFEIISSSRNLYF CHSRELGSLLSNIIQDYSDIGKVCIPVEYQNADSLLANSLTDCDSVILLPGPKDEPDNQL ITLIREHEAASLAVACHQSGTSLADVTLYTPQSSVSPLSFAALKMSLHTLFFHALQYCYL NMNNEKTSHKR >gi|283548478|gb|GG730299.1| GENE 315 357054 - 359900 2640 948 aa, chain + ## HITS:1 COG:rcsC_1 KEGG:ns NR:ns ## COG: rcsC_1 COG0642 # Protein_GI_number: 16130155 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 17 716 1 700 700 1330 91.0 0 MKYLASVHSTLKVSRYLFRALALLIWCLIAFASVFYIVNALHQRESEIHQELNLSSDQAQ RYIQRTSDVIKELKYIAENRLTAENGVMSLRARDDKTVVPNFEPLFADSDCSVMGNAWRG SLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLREMPVERDQALKALHERIIK YRNAPQDESDNNLFWISQGPRPGVGYFYALTPVYLANRLQALLGVEQPIRMENFFTPGSL PMGVTILDENGHALISVTGPEGNIKAEQRWMQERSWFGYTPGFRDLVLKKNLPPSSLSIV YSVPVDLVLERVRMMILNAILLNVLVGAALFMLTRMYERRIFIPAESDAQRLEEHEQFNR KIVASAPVGICILRTLDGINILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSN NTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHE LRTPLYGIIGNLDLLQTKELPNGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEP REFSPREVMSHITANYLPLVVRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKF TDTGCIVLHVQCDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI CEKLISMMDGDISVDSEPGMGSQFTLRIPLYGAQYPQKKGVEGLAGTRCWLAVRNASLYR FVESSLTRSGVTVLRYEGQQPDADDLLVADDVLEQAWQGRAAVIFCRRHIGIPLERRPGE WVHSVASPHELPALLAHIYSVDLGSEELSTALPAPDKVGATNDDMMILVVDDHPINRRLL ADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVV GVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLTVYAERVRKTRG >gi|283548478|gb|GG730299.1| GENE 316 360002 - 360652 828 216 aa, chain - ## HITS:1 COG:STM2270 KEGG:ns NR:ns ## COG: STM2270 COG2197 # Protein_GI_number: 16765597 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 216 1 216 216 393 98.0 1e-109 MNTMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMP GDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKAL AALQKGKKFTPESVSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIK TISSQKKSAMMKLGVENDIALLNYLSSVTLSPSDKE >gi|283548478|gb|GG730299.1| GENE 317 360669 - 363338 2343 889 aa, chain - ## HITS:1 COG:STM2269_1 KEGG:ns NR:ns ## COG: STM2269_1 COG0642 # Protein_GI_number: 16765596 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 699 1 699 699 1118 86.0 0 MSQSDTTASTRFSLLPGSITRYFLLLIVVLLVMMGVMVQSAVNTWLKDKSYQIVDITHAI HKRVDTWRYVTWQIYDNIAATASTPGAEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSS TLEMTQRISTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLTSGFKESTIGNIVD SRRAEMLQQANALDERESFSSLRRLVWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP AGMPLDSFHLVPDATATTEHVNEKESPDSVSINFNNGKIEISSALDSTDMRLVWQVPFGS LLLDTLQNILLPLLLNIALLALALFGYTTFRHRPARSTEVAPNLAANNELRILRAINEEI VSLLPLGLLVHDQEANRTVISNKIADHLLPHLNLQNITSMAEQHQGVIQATINNELYEIR LFRSQISSRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQARAAFMQNIGSALKDPAKTL AANAAALNTPDAQKLANQADVLVRMVDEIQLANLLESDAWKGESTLFSIQALIDDVVPEV LPAIKRKGLQLLIKNHLSAHDERRGDRDALRRILLLLIQYAVTTTQIGKITLEVDQDESE AERLTFRILDTGEGVTLQEVDNLHFPFINDTQGDRYGKANPLTFWLCDRLARKLGGHLNI KAREELGTRYIVHVKMPLHDQHADSEERLLDDVCVMVDVTSNDVRSIVLRQLENWGATCI TPDERLNSQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLE LIEEQLAQEEIQELPLGGDENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTA HRLKGVFAMLNLVPGKQLCEALEHLIQEKDAPGIEKYISDIDAYVKSLL >gi|283548478|gb|GG730299.1| GENE 318 364068 - 365168 1534 366 aa, chain + ## HITS:1 COG:ompC KEGG:ns NR:ns ## COG: ompC COG3203 # Protein_GI_number: 16130152 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 366 1 367 367 569 89.0 1e-162 MKVKVLSLLVPALLVAGTANAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRIG FKGETQVNDQLTGYGQWEYQIMGNSSENENNAWTRVAFAGLKFADAGSFDYGRNYGVVYD VTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAIQYQGKNGSPEGE GMTGVTGNGRDALNQNGDGVGGSITYDIGEGFALGTAVTSSKRTDEQNKLNFGTGDRAET YTGGLKYDANNIYLAAQYTQTYNATRAGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQS KGKDLGRGYGDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGISTDDIVAL GLVYQF >gi|283548478|gb|GG730299.1| GENE 319 365285 - 366337 1168 350 aa, chain + ## HITS:1 COG:STM2266 KEGG:ns NR:ns ## COG: STM2266 COG1477 # Protein_GI_number: 16765594 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Salmonella typhimurium LT2 # 1 350 1 350 350 594 82.0 1e-169 MEMNFYRAALLAVTIFFVGCDESTKPTQSTQPATVLQGKTMGTFWRVSAVGVDAKRAREL QAKIQTQLDADDQLLSTYKNDSALMRFNLSKSLSPWPVNDAMADIVTSALRIGAKTDGAM DITVGPLVNLWGFGPEQQPVHIPTQAQIDAAKAQTGLSHLKVINEADRNYLQKDLPDLSV DLSTVGEGYAADHLARLMEQEGIARYLVSVGGALNSRGMNAEGHPWRVAIQKPTDRENAV QAVVDINGHGISTSGSYRNYYELDGKRLSHVINPQTGRPIEHNLVSVTVIAPTALEADGW DTGLMVLGPEKAKEVVRREGLAVYMIVKEGQGFKTWMSPQFKSFLLSDKN >gi|283548478|gb|GG730299.1| GENE 320 366417 - 367481 866 354 aa, chain + ## HITS:1 COG:Zada_1 KEGG:ns NR:ns ## COG: Zada_1 COG2169 # Protein_GI_number: 15802766 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Escherichia coli O157:H7 EDL933 # 1 184 1 184 184 299 78.0 6e-81 MKNRLRITDDDRWQAVVERDADADGQFVFAVQTTGIFCRPSCRAKHALRKNVSFFADAEQ ALAAGFRPCKRCQPDKNSAQQHRLDKIAHACQLLEQESPLTLDELAQQVAMSPYHLHRLF KATTGMTPKAWQQSWRARRLRDALAKGMPVTQAILNAGFPDSSSYYRQADQALGMTAKQF RKGGDNVSVRYSLADCALGRCLVAASDRGICAILLGDDDATLVAELHELFPSAQDVAADA DFQRHVREVIAVINTRNTPLSLPLDIRGTAFQQQVWQALRAIPCGKTVSYQQLASAIGKP KAVRAVASACAANKLAIVIPCHRVVRGDGALSGYRWGVARKAQLLQRETTGEET >gi|283548478|gb|GG730299.1| GENE 321 367481 - 368131 475 216 aa, chain + ## HITS:1 COG:ECs3101 KEGG:ns NR:ns ## COG: ECs3101 COG3145 # Protein_GI_number: 15832355 # Func_class: L Replication, recombination and repair # Function: Alkylated DNA repair protein # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 378 83.0 1e-105 MLDLFADKKPWQEPLASGAVILRRFAFESAPSLLQAIAAVARQSPFRQMVTPGGYTMSVA MTNCGHLGWTTDQHGYLYSPFDPLSGAPWPPMPDAFADLCQQAATAAGYADFQPDACLIN RYTPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLRRNDPLKRLLLEHGDVVVWGG DSRLFYHGIQPLKTGYHPFTGDCRYNLTFRQAGKKE >gi|283548478|gb|GG730299.1| GENE 322 368207 - 369850 2043 547 aa, chain + ## HITS:1 COG:STM2263 KEGG:ns NR:ns ## COG: STM2263 COG4615 # Protein_GI_number: 16765591 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; P Inorganic ion transport and metabolism # Function: ABC-type siderophore export system, fused ATPase and permease components # Organism: Salmonella typhimurium LT2 # 1 547 1 547 547 978 92.0 0 MELLLLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETVDTTLMVLPEFLGLLLL LMIVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLAGLTSDIRNITI AFVRLPELVQGIILTVGSAAYLAMLSTKMLLVTAIWMAITIWGGFVLVARVYKHMATLRE TEDKLYNDYQTVLEGRKELTLNRERAEHIFNQLYVPDAKEYRHHIIRADTFHLSAVNWSN IMMLGAIGLVFWMANSLGWADTAVAATYSLTLLFLRTPLLSAVGALPTLLTAQVAFNKLN TFSLAPFKAEFPRPTAFPDWQTLELRNVVFRYQDNAFSVGPVNLTIHRGELIFLIGGNGS GKSTLAMLLTGLYQPQSGEILLDGKAVAVEKPEDYRKLFSAVFTDVWLFDKLLGPEGKEA NPQLVAKWLEHLKMGHKLELNDGRILNLKLSKGQKKRVALLLALAEERDIILLDEWAADQ DPHFRREFYQVLLPLMQEMGKTIFAISHDDHYFIHADRLLEMRHGQLSELLGDERDAASR DAVARTA >gi|283548478|gb|GG730299.1| GENE 323 369956 - 371392 1587 478 aa, chain + ## HITS:1 COG:YPO2839 KEGG:ns NR:ns ## COG: YPO2839 COG2239 # Protein_GI_number: 16123034 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Yersinia pestis # 14 478 27 491 491 575 66.0 1e-164 MSAINKNSARLRDEERARLIWLLTTDKAIISTLLGKLTLAEQYDVGTLADDIAEVGALVA HLPPPDLADTLEALPSEERHALWRLVESEKRGNVLLEASENVWDDLIDEMSDRELLDALQ YLDIDEQIYLVQHLPRNLTGRLLATLPAEERARVRQVLHYEKNRVGAIMEFEVITVRPDV TLEVVQRYLRRLGKMPENTDKLFVTDRNKVLVGELTLTCILLNDVQRQVSEVMEDDPLTF SPEDIAENAARTFERDNLVSAAVVDPSGKLMGRLTIDEIVDVVYEETDTDLRRMGGLSAE EDVFAPVTKAVKTRWAWLAINLCTAFIASRVIDGFEHTISQLVALASLMPIVAGIGGNTG NQTITMIVRALALQNIQPGNLTFLILREMGVALVNGLVWGGIMGGITWWLYDDMALGGVM TLAMMLNLLMAALMGVIIPMTMVKLGRDPAVGSSVMITAITDTGGFFIFLGLATLFLM >gi|283548478|gb|GG730299.1| GENE 324 371602 - 373263 1940 553 aa, chain + ## HITS:1 COG:ECs3099 KEGG:ns NR:ns ## COG: ECs3099 COG0579 # Protein_GI_number: 15832353 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli O157:H7 # 1 553 1 548 548 952 86.0 0 MKKVTAMLFTMAVGLNVVSMAAKAKVAEEQETDVLLIGGGIMSATLGTYLQELEPQWSMT MVERLDGVAQESSNGWNNAGTGHSALMELNYTPKKADGSISIEKAVEINEAFQISRQFWA YQVKNGVMHEPRSFITTVPHMSFVWGDENVNFLRARYAALQQSTLFRGMRYSEDHAQIKE WAPLVMEGRDPKQKVAATRTEIGTDVNYGEITRQLIASLQKKPNFALQLSSEVRGFKRNA DNSWTVTVADLKNNEAEHDIKAKFVFIGAGGAALKLLQETNIPEAKGYAGFPVGGQFLVA ENPDVVNRHLAKVYGQASVGAPPMSVPHIDTRILDGKRVVLFGPFATFSTKFLKNGSLWD LLSSTTTSNFMPMVNVGLDNFDLVKYLVSQVMLSDDDRFAALQEYYPQAKKEDWRLWQAG QRVQIIKSDAEKGGVLRLGTEVVSDKEGTIAALLGASPGASTAAPIMLHLMEKVFKDKVA SPEWQAKLKTIIPSYGTKLNGNVAATEQELQYTSDVLGLKYDKPQVADEAPKPQLKPQAQ PQPEQKAVADIAL >gi|283548478|gb|GG730299.1| GENE 325 373309 - 373818 549 169 aa, chain - ## HITS:1 COG:ECs3098 KEGG:ns NR:ns ## COG: ECs3098 COG4574 # Protein_GI_number: 15832352 # Func_class: R General function prediction only # Function: Serine protease inhibitor ecotin # Organism: Escherichia coli O157:H7 # 5 169 1 162 162 284 84.0 6e-77 MNNKMKTIVPAVLFAAFASTSAWAAGNDTAAQPLEKVAPYPKAEKGMKRQVIQLTPEKDE STLKVELLIGQTLEVDCNQHRLGGELDSKTLEGWGYDYYVFDKVTSPVSTMMACPDGKKE KKFITAHLGDDGMLRYNSKLPIVIYTPENVEVKYRIWKAEEKIQDAVAR >gi|283548478|gb|GG730299.1| GENE 326 374461 - 374703 76 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVLRINGCYRANSDTRAASVTGLIVELWLINTGQRGAKGYSHGFTAILTAMTLNRLMCE TVFPDRKTQIPCPGVARKKK >gi|283548478|gb|GG730299.1| GENE 327 374702 - 374965 316 87 aa, chain + ## HITS:1 COG:STM2260 KEGG:ns NR:ns ## COG: STM2260 COG3062 # Protein_GI_number: 16765588 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in formation of periplasmic nitrate reductase # Organism: Salmonella typhimurium LT2 # 1 87 1 87 87 119 83.0 1e-27 MDSNWQVCSLIVQAKSQHINEIATQLRAFPGCEVALSDVESGQLIVVVEAEQSETLMKTI ESVRNVAGVLAVSLVYHQQDEQGEETP >gi|283548478|gb|GG730299.1| GENE 328 374962 - 377448 3212 828 aa, chain + ## HITS:1 COG:STM2259 KEGG:ns NR:ns ## COG: STM2259 COG0243 # Protein_GI_number: 16765587 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 828 1 828 828 1673 95.0 0 MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKAPCRFCGTGCGVLVGTQ QGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPMLRMKDGKYHKEGEFTPISW DQAFDVMEEKFKTSMKEKGPESIGMFGSGQWTIWEGYAAAKLFKAGFRSNNIDPNARHCM ASAVVGFMRTFGMDEPMGCYDDIEHADAFVLWGANMAEMHPILWSRITNRRLSDPNVKVA VLSTFQHRSFELADNGMVFTPQTDLVILNYIANYIIQNNAINQDFFSKHVNLRKGVTDIG YGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLDKTAEMTGVPKDQLEQLAQLYA DPKKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREV GTFSHRLPADMVVTNEKHRDICEKHWNIPTGTIPAKIGLHAVAQDRALKDGKLNVYWTMC TNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALSADLILPTAMWVEKEGAYGNAER RTQFWRQQIKAPGESKSDLWQLVQFSRRFKTEEVWPEELLTQKPELRGKTLYDVLFATPA VTKFPVAELADDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPV VEGKETQWRYSEGNDPYVKAGESYKFYGKPDGKAVIFALPFEPAAEAPDKEYDLWLSTGR VLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETR GRNRPPQGLVYMPFFDAAQLVNNLTLDATDPLSKETDFKKCAVKLAKV >gi|283548478|gb|GG730299.1| GENE 329 377455 - 378150 572 231 aa, chain + ## HITS:1 COG:napG KEGG:ns NR:ns ## COG: napG COG1145 # Protein_GI_number: 16130142 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli K12 # 1 231 1 231 231 429 93.0 1e-120 MSRSAKPQNGRRRFLRDMVRAAGGLAVVGVALGLQQQTARATGVRLRPPGALREEAFASA CVRCGQCVQACPYDTLKLATLASGLAAGTPYFVARDIPCEMCEDIPCAKVCPSGALDREI ESIDDSRMGLAVLLDHENCLNYQGLRCDVCYRECPKIDEAITLELDRNMRTGKHARFIPT VHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHHYRFGWLEGNNGKS >gi|283548478|gb|GG730299.1| GENE 330 378137 - 379000 627 287 aa, chain + ## HITS:1 COG:STM2257 KEGG:ns NR:ns ## COG: STM2257 COG0348 # Protein_GI_number: 16765585 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Salmonella typhimurium LT2 # 1 280 1 280 289 506 85.0 1e-143 MANRKRDAGREAQAKKGWWKSHRWLALRRLSQLLILAMFLSGPWLGVWILHGNYSGSLLL DTVPFTDPLITLQSLASGHLPATVALTGAAIITVLYAVAGKRLFCSWVCPMNPVTDLASW LRRRFDLNQSATLPRHIRYVLLVVILVGSALTGTLLWEWINPVSLLGRSLVMGFGSGALL ILALFLFDLLVVEHGWCGHLCPLGALYSVVGSKGALTVSAKERNRCNRCMDCFHVCPEPH VLRAPVLDEQSPVQVTSRDCMACGRCVDVCSEDVFTITIRWSSGAKQ >gi|283548478|gb|GG730299.1| GENE 331 378997 - 379446 484 149 aa, chain + ## HITS:1 COG:ECs3092 KEGG:ns NR:ns ## COG: ECs3092 COG3043 # Protein_GI_number: 15832346 # Func_class: C Energy production and conversion # Function: Nitrate reductase cytochrome c-type subunit # Organism: Escherichia coli O157:H7 # 1 149 8 156 156 284 92.0 5e-77 MKSHDLIKKLSQWTALLALVVSGAVWAANGVDLSQSPEVSGTQEGAIRMPKEQERMPLNY VNQPPMVPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVLGEVAPRR YFCLQCHVPQADAAPIVENTFTPSKGYGK >gi|283548478|gb|GG730299.1| GENE 332 379456 - 380058 527 200 aa, chain + ## HITS:1 COG:STM2255 KEGG:ns NR:ns ## COG: STM2255 COG3005 # Protein_GI_number: 16765583 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Salmonella typhimurium LT2 # 1 200 1 200 200 407 95.0 1e-114 MENSNRKPGWIKRVWQWWRRPSRLALGTLLLIGFVGGIIFWGGFNTGMEKANTEEFCISC HEMRNTVYQEYMETVHYNNRSGVRATCPDCHVPHEWAPKMIRKIKASKELYAKALGLIDT PQKFEDHRLTMAQNEWRRMKDNNSQECRNCHNFEFMDLTAQKGVAAKMHDQAVKDGQTCI DCHKGIAHKLPDMREVKPGF >gi|283548478|gb|GG730299.1| GENE 333 380079 - 380699 513 206 aa, chain + ## HITS:1 COG:ccmA KEGG:ns NR:ns ## COG: ccmA COG4133 # Protein_GI_number: 16130138 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, ATPase component # Organism: Escherichia coli K12 # 1 204 1 204 205 330 87.0 1e-90 MLEARELLCERDDRILFSDLSFRVNAGEWVQITGSNGAGKTTLLRLLTGLARPDAGDVCW QEQPLHQVRDSYHQQLLWIGHQPGIKTRLSALENLRFFHHDGDIAQCLAALAQAGLAGYE DIPVNQLSAGQQRRVALARLWLTRARLWILDEPFTAIDVNGVERLTQRMAQHTEQGGIVI LTTHQPLNVETSKVRRIALTSERATQ >gi|283548478|gb|GG730299.1| GENE 334 380696 - 381355 720 219 aa, chain + ## HITS:1 COG:ECs3089 KEGG:ns NR:ns ## COG: ECs3089 COG2386 # Protein_GI_number: 15832343 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 219 2 220 220 268 93.0 6e-72 MMWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLA SLLALERLFRDDLQDGSLEQLMLLPLPLPVVVLAKVMAHWVVTGLPLLILSPLVALLLGM DLYGWKIMALTLLLGTPTLGFLGAPGVGLTVGLKRGGVLLSVLVLPLTIPLLIFATAAMD AASMHLPVDGYMAILGALLVGSATLSPFATAAALRISVQ >gi|283548478|gb|GG730299.1| GENE 335 381459 - 382169 840 236 aa, chain + ## HITS:1 COG:ECs3088 KEGG:ns NR:ns ## COG: ECs3088 COG0755 # Protein_GI_number: 15832342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 236 10 245 245 376 92.0 1e-104 MPPRLYQICGWFIPWLAIASAVVLITGWVWGFGFAPADYQQGQSYRIIYLHVPAAIWSMG IYASMAVAAFIGLVWQMKMANLALAAMAPIGAVFTFIALVTGSAWGKPMWGTWWVWDARL TSELVLLFLYVGAIALWHAFDDRRLAGRAAGILVLIGVVNLPIIHYSVEWWNTLHQGSTR MQQSIDPAMRAPLRLAIVGYLLLFVTLALMRMRNLILMMEKRRPWVSELILKRGRQ >gi|283548478|gb|GG730299.1| GENE 336 382166 - 382378 164 70 aa, chain + ## HITS:1 COG:ECs3087 KEGG:ns NR:ns ## COG: ECs3087 COG3114 # Protein_GI_number: 15832341 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Heme exporter protein D # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 76 79.0 1e-14 MTPAFASWSDFFAMGGYALYVWLAVAMSVIPLLVLVVHSALQHRAILRDVAQQRAREARM RAAQVQREAA >gi|283548478|gb|GG730299.1| GENE 337 382375 - 382854 474 159 aa, chain + ## HITS:1 COG:ECs3086 KEGG:ns NR:ns ## COG: ECs3086 COG2332 # Protein_GI_number: 15832340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c-type biogenesis protein CcmE # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 293 89.0 7e-80 MNIRRKNRLWIACAVLAGLALTISLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRL RVGGMVMPGSVKRDPQSLRVNFSIYDAEGVVDVTYEGILPDLFREGQGVVVQGELDKGNH VQAKEVLAKHDENYTPPEVEKAMQENHRRPESVYKDKTS >gi|283548478|gb|GG730299.1| GENE 338 382851 - 384800 2491 649 aa, chain + ## HITS:1 COG:ccmF KEGG:ns NR:ns ## COG: ccmF COG1138 # Protein_GI_number: 16130133 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 1 649 1 647 647 1037 87.0 0 MMPEIGNALLCLALGVALLLSVYPLWGVARGDVRMMASARPFAWVLFICVMGAFLILVNA FVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAAFSQRMPLD IVARVLAVMGMVCVGFLLFILFTSNPFARTLPNFPVEGRDLNPLLQDPGLIFHPPLLYMG YVGFSVAFAFAIAALMSGRLDSTFARFSRPWTLAAWVFLTLGIVLGSAWAYYELGWGGWW FWDPVENASFMPWLVGTALMHSLSVTEQRASFKAWTLLLSICAFSLCLLGTFLVRSGVLV SVHAFASDPSRGMFILTFMVLVIGGSLLLFAVRGHKVRSRVNNALWSRESLLLGNNVLLI AAMLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTWLMAPFALLLGIGPLVRWGRDRPR KLKTLLIIAFVTTLVLSLLLPWLFEDRIVAMTVVGMAMACWIFVLAMSEAFLRISRGTKL TPSYWGMVLGHVGLAITIVGIAFSQNYSVERDVRMKAGDSVSIHNYQFTFREVKDITGPN YRGGVAIIGVTRDGKPEATLHAEKRFYNSTSSMMTEAAIDGGLTRDLYAALGEELDGGAW AVRLYYKPFIRWIWAGGLLMALGGVFCLFDPRYRQRPRAAVQKNASEAV >gi|283548478|gb|GG730299.1| GENE 339 384797 - 385354 753 185 aa, chain + ## HITS:1 COG:ECs3084 KEGG:ns NR:ns ## COG: ECs3084 COG0526 # Protein_GI_number: 15832338 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 185 1 185 185 353 91.0 7e-98 MKRNALLIPFIIFLIIAAALLWQLARNAQGDDPTNLESALIGKPVPTFRLESLENPGQHY QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGVRVVGMNYKDDRQKAIVWLKELG NPYSLSLFDGDGMLGLDLGVYGAPETFLIDGKGIIRYRHAGDLNARVWESEIKPLWDKYS KEAAQ >gi|283548478|gb|GG730299.1| GENE 340 385351 - 386400 1196 349 aa, chain + ## HITS:1 COG:ccmH_2 KEGG:ns NR:ns ## COG: ccmH_2 COG4235 # Protein_GI_number: 16130131 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Escherichia coli K12 # 132 348 3 219 221 347 76.0 2e-95 MRFLLGVLMLIISGSALATIDVMQFKDEAQEQQFRQLTEQLRCPKCQNNSIADSNSMIAT DLRQKVYELMQEGKSQKEIVDYMVARYGNFVTYDPPLTPLTVLLWVMPVVAIVLGGWVIF ARTRRRVRVKQEEFPDDIIPDGKRGGFGLFVPGVVAALVVGAVSYYLTGNYKQVAVWQQA TAQAPMLLERALDPKAEPLNEEDMTRLALGLRTRLQSDPTNVEGWIMLGRIGMVLGNAST ATEAYANAYRLDPNNSDAALGYAEALTRSSDPDDNRRGGELLRQLIRGEHANVRVLSMYA FNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIKQAMDQLTPQEK >gi|283548478|gb|GG730299.1| GENE 341 386501 - 387148 883 215 aa, chain - ## HITS:1 COG:STM2246 KEGG:ns NR:ns ## COG: STM2246 COG2197 # Protein_GI_number: 16765574 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 215 1 215 215 360 91.0 1e-99 MPEATPFRVLIVDDHPLMRRGISQLLQLDPAFNVVAEAGDGASAIDLANRLDLDVILLDL NMKGMSGLDTLNALRRDGVTAQIIILTVSDAASDVYALIDAGADGYLLKDSDPEVLLEAI RSGAKGGKAFSTRVSEYLRERDLFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNI SEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ >gi|283548478|gb|GG730299.1| GENE 342 387775 - 388431 310 218 aa, chain + ## HITS:1 COG:no KEGG:SeHA_C2913 NR:ns ## KEGG: SeHA_C2913 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 207 1 207 212 134 42.0 3e-30 MISPVRQNIFERAASTPALSMRELALLLCGLDLRLQTAAIPENKREYYDIWLYQISRQIK SAGLQPQGKNKQLYPADEMFALAHLMTDETITPEPIRTRCLLAVTTIANQNLARSWLMRL GGPPLLELGLTLRRNQRGQYRKTTERENTDRLLFLLIMLLVKNSQGAYGTPESPHLADIW RDIQTLAEREGLPAEGLSRSTIYSKLKSALTIPRRSHD >gi|283548478|gb|GG730299.1| GENE 343 388727 - 388942 59 71 aa, chain + ## HITS:1 COG:STM2744 KEGG:ns NR:ns ## COG: STM2744 COG3311 # Protein_GI_number: 16766056 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 12 67 11 66 71 77 73.0 4e-15 MITSQPPTSLDFPLSGNVRIRQVALFLAMSESTVHRRVKDPGFPQPVRLSSRLVVFDAAE VRRWQERSKTG >gi|283548478|gb|GG730299.1| GENE 344 388985 - 390661 949 558 aa, chain + ## HITS:1 COG:STM2745 KEGG:ns NR:ns ## COG: STM2745 COG5519 # Protein_GI_number: 16766057 # Func_class: L Replication, recombination and repair # Function: Superfamily II helicase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 120 1 120 689 93 43.0 1e-18 MKRAPNVKKLPEDKYTEAIIFAGDEAWNAAKRYMQDPEADDPVPPIVLDLDQLEHLSELD IIDENRHRVRIHQAGRIAQLPLTQIAHKLALANVQYAVLYDLKGNLLEDWTTQLVRLKSD AAELLASQQALSDGTPLAEADLQRLEALNHEYTHVLLSGEHYVVSVKPHAVTGRTHIFQT LRAFRNNFLADKPIAGKPTGNAWLQWPGHTSKAGGIGFYPQPALCPPDICNLFTGFITEP RPGDISPFLYHVEQVICAGDKVVSDYLMQWIAHLIQHPEEKPSVAIVMKSVEGTGKNTLV RPLLQILGPYAAQINGIRHLTGRFNSTLANKLLVFVDEAEMTEAGCADRLKAIISEPVFH LERKGMEPEPVPNCARMIFASNHEQVIRAGLYERRFLVLEPDARRIRDKDYFDRLYRWLA EDGASYLLHWLQHLDLAGFDPRRPPVTQALREEKIASLPLVHQFMLAELETSRPFSGMAR LTATELVERFLLWSTTHRLPLSPAAARAMSGKLMQRLGVPVQGRSGRGIGKYYELPEGDV LRQRFAVMLGEATNVIFG >gi|283548478|gb|GG730299.1| GENE 345 392024 - 393067 129 347 aa, chain + ## HITS:1 COG:no KEGG:Sama_2922 NR:ns ## KEGG: Sama_2922 # Name: not_defined # Def: P-loop ATPase-like protein # Organism: S.amazonensis # Pathway: not_defined # 2 344 358 709 715 148 29.0 3e-34 MLNKAADVVASFNDIRNELISSHGGDKKEILHNLLGEIFPLIKSGNSPYRSASNADANGR VSSPQRLYIALHYNTPIEYLSDQQIQEFISGLIDRKDFLDNVLSNDAEDRFFEMMHIYVD LCKDKSYEVLTDIFDAFLASEKLKKSLLSNLEFFSTDMYTKINWLVFEIISKSKEKYEII KRIVEREENTPFSGDILRDIRSQYKEQNNDNFWLNTSQLNEIELIFQDVAISSLSNKRFL NNNLEPHIFYALKASSKDKASAFISNLFGTSEGVIRISELIGESGRDSTNGPYVQIKDND FTDFINIKILRAEVEKLDIEHYSKRTQAILKSIMDGRKYYLRDSAND >gi|283548478|gb|GG730299.1| GENE 346 396135 - 396803 -40 222 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832367|ref|ZP_06352108.1| ## NR: gi|283832367|ref|ZP_06352108.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 222 963 1184 1184 435 100.0 1e-120 MLGLKENEELRRIELIGHALAYSVIPSLPLSELTEDNFKRLISFYNDNGNATEVLVALAY FSAANDAFTERLENLYKKTLQSKDIDKVVCTSYAIYTWMKLNKSSAVERLTVRLIYLIEP NRMAYLHGLLWTVNEMYCSEYLSNRDIEFLVDILPVIFDSATYTDINPASKESVSISLVR AACVRLAKDILTISHSENKELYRIINEAKLDPLPEVRFANID >gi|283548478|gb|GG730299.1| GENE 347 397103 - 397786 144 227 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832368|ref|ZP_06352109.1| ## NR: gi|283832368|ref|ZP_06352109.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 227 19 245 245 442 100.0 1e-122 MFSSLASLKSRLAHYCYTLVPSDDNDELIQIFNINRHHCGTLHQECLERWLNHAESWRER FPEKPLSPHDNASLHLALEILSSHALNQSEAISTLTEGDFYSPGGLRHIRQLLASVVYGF AFRLAEIRIASAYRETEGSLFMLTESLRQLADSVLADHRHHRPVERCRLDSVAMSLTVIQ IRLDEWLRQPDKLLRDESVINELCAVSNAMKSLLLDIARMRSGCWQQ >gi|283548478|gb|GG730299.1| GENE 348 397797 - 397997 306 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085112|ref|ZP_06352110.2| ## NR: gi|291085112|ref|ZP_06352110.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 66 11 76 76 112 100.0 7e-24 MNLTPDKPTARDLLDRCRILTHSMLEIDEHGPNYVLLLILADQLHLLYEAFKEAEELEMR REKLPE >gi|283548478|gb|GG730299.1| GENE 349 398844 - 399719 751 291 aa, chain + ## HITS:1 COG:STM2760 KEGG:ns NR:ns ## COG: STM2760 COG0582 # Protein_GI_number: 16766072 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1 291 1 291 291 488 90.0 1e-138 MSRLAQDMKKLAHRAGGSHKTVHDREQMAQRFAHHLLAQNIQITRTDHIKARHITGYINE RLAQGISPRTLQNEMAMVRSILTEAGRTQLSQSELISNRSLGISGACRDGTHRAIPDVFY QQVLERIQQTDAGLAASLQLARVMGLRGQEAVQCCQSLKTWDKQLEKGTERLPVIFGTKG GRPRMTQVTDREAVRQAVKEALNIAGERNGHLIDKPDLKSAMDYWHNHLRDAGLTGEYSP HSLRYAWAQDAIRYYEEQGLSHKEALAVTSTDLGHGDGRGRYIEQVYGQMD >gi|283548478|gb|GG730299.1| GENE 350 399860 - 401092 391 410 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 48 395 50 401 406 155 30 1e-35 MARQTRPLTATEVKNARAADKATVLYDGSGLELQITSSGSKLWRFRYYKPHSQKRAMMSF GSYPAVTLADARVLRENARSLLAKYIDPLEEQRASQEKTRRTRENTFKYVATNWYELKKA AGLKPHTLQDIWNSLNRYVFPHIGEIGIDELTAQQVIAALEPCRAGGKLETVKRMTQRIN EVMDYAMNAGLIVANPVARVGRAFPRPVVRHRPSLPPEQLPELMRALSVASIRLQTRCLI EWQLLTMCRPAEASGARWSEVDMKAREWRIPEGRMKIQRQHIIPLSEQAMRLLEVMKPIS QHGEFIFPALGHPKKPMNSQTANMALKRMGFKGLLVAHGMRAIASTTLNEAGFPPDVIES ALAHMDTNEVRRAYNRANYLEQRREMMVWWGNYVDRAATGRFGLSCLDEK >gi|283548478|gb|GG730299.1| GENE 351 401152 - 401286 84 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832373|ref|ZP_06352114.1| ## NR: gi|283832373|ref|ZP_06352114.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 44 1 44 44 72 100.0 7e-12 MPCCMPKTVNFNVLTWLDMSNKKTAGHNNLLFLLEKCHFMMIHN >gi|283548478|gb|GG730299.1| GENE 352 401453 - 403171 1920 572 aa, chain - ## HITS:1 COG:STM2228 KEGG:ns NR:ns ## COG: STM2228 COG3083 # Protein_GI_number: 16765557 # Func_class: R General function prediction only # Function: Predicted hydrolase of alkaline phosphatase superfamily # Organism: Salmonella typhimurium LT2 # 1 572 15 586 586 1049 89.0 0 MVSWGHWFALFNILLAMVLGSRYLFVADWPTTLAGRVYSYLSVVGHFSFLVFAAYLLILF PLTFIVMSQRLMRFLSAILATAGMTLLLIDSEVFTRFHLHLNPIVWELVINPDQNEAARD WQLMFISVPVILLIEMLFATWSWQKLRSLTRRRHFAKPLAAFFFVSFIASHVVYIWADAN FYRPITMQRANLPLSYPMTARKFLEKHGLLDAQEYQRRLIEQGNPEAVSVQYPLSELRYR DMGTGQNVLLITVDGLNYSRFEKQMPALAEFAGQNISFTRHMSTGNTTDNGIFGLFYGVS PSYMDGILSTRTPAALISALNQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVQTQSDEQ TASQWINWLGRYAQEDNRWFSWVSFNGTNLDDSNQKNFAKRYANAAQDVDANINRILSAL RDSGKLNNTVVIITAGHGVPLTQEENNFAWSRGHLQVPLIIHWPGTPAQRINSLTDHTDL MTTLMQRLLHVSTPANEYSQGQDLFNATRRHYWVTAADGSTLAITTPEMTLVLNNNGNYH TYNLHGEKIKDQKPQLSLLLQVLTDEKRFIAN >gi|283548478|gb|GG730299.1| GENE 353 403245 - 403472 204 75 aa, chain - ## HITS:1 COG:ECs3079 KEGG:ns NR:ns ## COG: ECs3079 COG3082 # Protein_GI_number: 15832333 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 75 1 75 75 114 92.0 4e-26 MPQISRYSDEHVEQLLNEMLNVLEKHKAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANS FARALQSSVNDDQAH >gi|283548478|gb|GG730299.1| GENE 354 403607 - 404614 1320 335 aa, chain + ## HITS:1 COG:STM2226 KEGG:ns NR:ns ## COG: STM2226 COG3081 # Protein_GI_number: 16765555 # Func_class: R General function prediction only # Function: Nucleoid-associated protein # Organism: Salmonella typhimurium LT2 # 1 335 1 335 335 629 96.0 1e-180 MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTATVVDMMAELHRVYSAKNKAYGLFSEE SELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGIVLFCHYRYLAVEYLLVAV LNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPESTRYLTFLKGRVGRKVAD FFMDFLGASEGLNAKAQNRGLLQAVDDFTNEAQLDKAERQNVRQQVYSYCNEQLQAGEEI ELESLSKELSGVSEVSFSEFAADKGYELEESFPADRSTLRQLTKFAGSGGGLTINFDAML LGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGGK >gi|283548478|gb|GG730299.1| GENE 355 404715 - 404999 464 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157144862|ref|YP_001452180.1| 50S ribosomal protein L25 [Citrobacter koseri ATCC BAA-895] # 1 94 1 94 94 183 98 3e-44 MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGAEAPIAIELDHDAVMNMQAKAEFYSEV LTIVVDGKEVKVKAQAVQRHAFKPKLTHIDFVRA >gi|283548478|gb|GG730299.1| GENE 356 405124 - 406884 1621 586 aa, chain - ## HITS:1 COG:yejH_1 KEGG:ns NR:ns ## COG: yejH_1 COG1061 # Protein_GI_number: 16130122 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Escherichia coli K12 # 1 358 1 358 358 707 95.0 0 MIFTLRPYQKEAVDATLNHFRHHRTPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKE LVAQNYAKYCALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH RIGDDEESQYQQILTHLTNLNPHLRLLGLTATPFRLGKGWIYHFHYHGMVRGDEKALFRD CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH IISQIVEFAQTRKGVMIFAATVEHAKEILGLLPADDAALITGDTPGAERDVLIEEFKAQR FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP HDLYAPEVGAPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMV LQNGQDEKGEWLKITYYDEDGADVSERFRLHTPAQRTAFEQLFIRPHTRTPGIPLRWITA ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG >gi|283548478|gb|GG730299.1| GENE 357 407036 - 407743 667 235 aa, chain + ## HITS:1 COG:ECs3075 KEGG:ns NR:ns ## COG: ECs3075 COG1187 # Protein_GI_number: 15832329 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli O157:H7 # 1 230 1 230 231 439 93.0 1e-123 MRLDKFIAQQLGVSRAIAGREIRANRVTVDGEIVKNSAFKLLPEHDVEYDGNSLIQQNGP RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR ITSPRHHCEKTYLVTLESPVAEDTAEQFARGVQLHNEKDLTKPAVLEVITPTQVRLTISE GRYHQVKRMFAAVGNHVVELHRERIGAIKLDDDLEPGEYRPLTEEEIASVNLTPR >gi|283548478|gb|GG730299.1| GENE 358 407759 - 408949 1098 396 aa, chain + ## HITS:1 COG:STM2221 KEGG:ns NR:ns ## COG: STM2221 COG0477 # Protein_GI_number: 16765550 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 396 1 396 396 617 94.0 1e-176 MTTRQNSSIAIVFILGLLAMLMPLSIDMYLPALPVISEQFGVPAGSAQMTLSTYILGFAV GQLLYGPMADSIGRKPVILGGTLVFAAAAVACALAQTIDQLIVMRFFHGLAAAAASVVIN ALMRDIYPKEEFSRMMSFVMLVTTIAPLLAPIVGGWVLVWLSWHYIFWILAVAAILASVM IFTLIKETLPVERRQPFRLRTTLGNFASLFRHKRVLSYMLASGFSFAGMFSFLSAGPFVY IEINHVSPQHFGYYFALNIVFLFVMTIINSRFVRRVGALNMFRAGLWIQFVMAGWMVFSA LFGVGFWALVVGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGTFRFGIGAIVGAL LSLATFNSAWPMIWSIAFCATSSILFYLYASRAKKR >gi|283548478|gb|GG730299.1| GENE 359 409286 - 409627 343 113 aa, chain + ## HITS:1 COG:no KEGG:SPAB_00781 NR:ns ## KEGG: SPAB_00781 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 2 113 10 121 121 216 96.0 2e-55 MTLQLSIVHRLPQCYRWSVGFAGSKVEPIPQNGQSNENSLVALKLLSPDGDSAWSVMHKL SQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGVAIAEPFSNNNPF >gi|283548478|gb|GG730299.1| GENE 360 409631 - 411220 316 529 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 301 528 27 261 563 126 34 5e-27 MTQPLLTIENLSVGFRQQETVRTVVNAVSLRVDAGQTLALVGESGSGKSVTALSILRLLP SPPAVYLGGDIRFHGESLLHADEQTLRGVRGNKIAMIFQEPMVSLNPLHNLEKQLYEVLS LHRGMRREAARAEILTCLDRVGIRQAAKRLADYPHQLSGGERQRVMIAMALLTRPELLIA DEPTTALDVSVQAQILQLLRELQRELNMGLLFITHNLSIVKKLADTVAVMQNGQCVEQNH AAQLFSAPSHPYTQKLLNSEPSGDPVPLPVGQKPLLEVEKLRVAFPVRKGILKRVVDHNV VVNDVSFSLRPGETLGLVGESGSGKSTTGLALLRLITSQGSIVFDGLALHTLNRRQLLPV RHRIQVVFQDPNSSLNPRLSVLQIIEEGLRVHQPTLSAEQREAQVKAVMTEVGLDSETRH RYPAEFSGGQRQRIAIARALILKPSLIVLDEPTSSLDRTVQAQILMLLKSLQQKHHLAYI FISHDLHVVRALCHQVIVLRQGEVVEQGQCEHVFNAPQQAYTRQLLALS >gi|283548478|gb|GG730299.1| GENE 361 411222 - 412247 1112 341 aa, chain - ## HITS:1 COG:ECs3071 KEGG:ns NR:ns ## COG: ECs3071 COG4239 # Protein_GI_number: 15832325 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 341 1 341 341 625 93.0 1e-179 MSRLSPVNQARWARFRHNRRGYWSLWIFLALFGLSLCSELIANDKPLLVRYDNSWYFPLF KNYSESDFGGPLATKADYQDPWLQQRLEKQGWILWAPIRFGATSINFATDKPFPSPPSAQ NWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGIMAGAIQGYYGGKVDLWGQRFI EVWSGMPTLFLIILLSSVVQPNFWWLLGITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQA LGVSDRNIILRHMLPNAMVAALTFLPFILCASITTLTSLDFLGFGLPLGSPSLGELLLQG KNNLQAPWLGITAFISVALLLSLLIFIGEAVRDAFDPNKAI >gi|283548478|gb|GG730299.1| GENE 362 412247 - 413341 1316 364 aa, chain - ## HITS:1 COG:ECs3070 KEGG:ns NR:ns ## COG: ECs3070 COG4174 # Protein_GI_number: 15832324 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli O157:H7 # 1 364 1 364 364 667 95.0 0 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVEQAVAAIEFGQSGALPGAGSEGIRA SHAQTGVGNISDSNYRGGRGLDPEVIAEITRRYGFDKPIHERYFKMLWDYIRFDFGDSLF RSASVLTLIKDSLPVSVTLGLWSTLIIYLVSIPLGIRKAVHNGSRFDVWSSAFIIIGYAI PAFLFAILLIVFLAGGSYYDLFPLRGLVSANFDALPWYQKITDYLWHITLPVLATVVGGF AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFT GSLLIEVMFSLNGLGLLGYESTVSRDYPVMFGTLYIFTLIGLLLNILSDISYTLVDPRID FEGR >gi|283548478|gb|GG730299.1| GENE 363 413342 - 415156 1555 604 aa, chain - ## HITS:1 COG:STM2216 KEGG:ns NR:ns ## COG: STM2216 COG4166 # Protein_GI_number: 16765545 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 601 1 601 601 1100 89.0 0 MIPRLLLLFVALIGFSVQAQSIKESYAFSVLGEPKYAFNFNHFDYVNPAAPKGGQITLSA IGTFDNFNRYAMRGNPGARTETLYDTLFTTSDDEPGSYYPLIADSARYADDYSWVEIAIN PRARFHDGSPITASDVAFTFHKFMTEGVPQFRLVYKGTTVKAIAPLTVRIELAKPGKEDM LSLFSLPVMPEKYWKDHKLSDPLSSPPLASGPYRITQWKMGQYIVYSRVKDYWAANLPVN RGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRLENDAKNWATRYTGKNFANHYIVKDEQK NESAQDTRWLAFNIQRPVFSDRRVREAITLAFDFEWMNKALFYNAWSRTNSYFQNTEYAA KNYPDADELVILAPLKKDLPPEVFSQIYQPPTSKGDGYDRDNLLKANTLLEQAGWILKGQ QRVNSASGKPLSFELLLPAGSNSQWVLPFQHNLQRLGITMNIRQVDNSQITNRLRSRDYD MMPRLYRAMPWPSSDLQILWASEYIDSSYNAPGVKSPVIDKLINQIIAAQGDKAKLIPLG RALDRVLTWNYYMLPMWYMAEDRIAWWDKFSHPAIRPIYTIGLDNWWYDVNKAAKLPAAR RQGG >gi|283548478|gb|GG730299.1| GENE 364 415257 - 416768 1023 503 aa, chain - ## HITS:1 COG:STM2215_2 KEGG:ns NR:ns ## COG: STM2215_2 COG2200 # Protein_GI_number: 16765544 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Salmonella typhimurium LT2 # 246 503 1 258 258 425 77.0 1e-118 MLTGLIVALVVSTLQFLVTWHKREVKYETLLADIQNYVSSYFADLKTTADALQPLLEQNC QQVAAKLTSSAAFNLNVRAFLLVKDGIAFCSSATGEMNSPILSLIPKLNINKDVDVEILS GTPMMPDKPAIMIWHRNPSLHNSGVFSSLNINLAPYLLYTAREDNFDGIAVIAGDTAIST FSSRILDVSALPNTPWRQATLKEVPLKIRLYAQEWTYSDVWYAIMLGCMAGIMTGVLLWY YIFTIRLRPGKDILHAIKHNQFYVVYQPVVEVQTLEVKGAEVLLRWHHPSTGEIPPDAFI HYAESQKMIVPLTQHLFKLIAQDAPMLQKVLPAGAKLGINIAPTHLHGETFKDDIRRLHA SLPADYFKLVLEITERDMLDQHEATQLFEWLHAAGFEIAIDDFGTGHSALIYLERFTVDY LKIDRGFINAIGTETLTSPVLDAVLTLSKRLNMLTVAEGVETPEQARWLRDRGVHFFQGY WISRPLKLADFVRWMAQPNKPTW >gi|283548478|gb|GG730299.1| GENE 365 416985 - 417449 350 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 31 150 58 174 175 139 55 6e-31 MHSETHAVGNGDNSSLQASQDEFENMVRNIDVKSRIMDQYADWKGVRYRLGGSTKKGIDC SSFVQRTFREQFGLELPRSTYEQQETGKSVSRTNLRTGDLVLFRAGSTGRHVGIYIGNNQ FVHASTSSGVIISSMNEPYWKKRYNEARRVLSRS >gi|283548478|gb|GG730299.1| GENE 366 417971 - 418684 664 237 aa, chain - ## HITS:1 COG:STM2213 KEGG:ns NR:ns ## COG: STM2213 COG0671 # Protein_GI_number: 16765542 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Salmonella typhimurium LT2 # 1 237 3 239 239 372 82.0 1e-103 MKTRYPLIILFNIAGVALFLSWYIPAGHGFWSPLDTGVFRFFNQKLIESPLFLWIVAITN NRAFDGCSLLAMGALMLHFWLKETSEGRRRIVAIGLVMLLTAVVLNQLGQALIPVKRASP TLMLDNIYRVSELLHIPTKDASRDSFPGDHGMMLLIFSAFMWRYFGKVAGIIGLIIAVVF AFPRVMIGAHWLTDIVVGSMTVVLIGLPWWLMTPLSDRLITLFTNYLPGKNKQFSNK >gi|283548478|gb|GG730299.1| GENE 367 418719 - 419705 856 328 aa, chain - ## HITS:1 COG:STM2212 KEGG:ns NR:ns ## COG: STM2212 COG0523 # Protein_GI_number: 16765541 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Salmonella typhimurium LT2 # 1 324 1 324 328 592 89.0 1e-169 MTKTNLITGFLGSGKTTSILHLLANKDPAEKWAVLVNEFGEVGIDGALLADSGALLKEIP GGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRATL CILDPRLLLDDKSVANDNFRDQLAAADVIVANKADRATAESENALHTWWQRYGGDRQLVH ADHGNIDGHLLDLPRLNLAELPASAEHAHQHIEKKGLAALSLPAQQRWRRSLNSGQGHQA CGWIFDADTVFDTIGLLEWSRLAPVGRVKGVMRIKEGLVRINRQGDDWHIETQNVAPPDS RIELISDTDTDWNTLQSALLRLRLDGSE >gi|283548478|gb|GG730299.1| GENE 368 419825 - 421291 1366 488 aa, chain - ## HITS:1 COG:yeiQ KEGG:ns NR:ns ## COG: yeiQ COG0246 # Protein_GI_number: 16130110 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 1 487 1 487 488 824 80.0 0 MKTIASAPLAKNVLVPQYDRQQLKTRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEI SLFSGDRLMSQLRAQDHLFTVLEKGAHGNQPIVIGAVNECLNATLDSLAAIIEKFCEPQV AIVSLTITEKGYCIDPATGSLDLANPRIVHDLQTPAEPHSAPGIIVEALHRRRERGLQPF TVLSCDNIPDNGHVVKNAVLGMAEKRSPELAHWIQEHVSFPGTMVDRIVPAATEESLAEI ARELGVADPCAISCEPFIQWVIEDNFVRGRPQWETAGVQMVENVLPWEQMKLRMLNGSHS FLAYLGYLSGFQHISDCMQDSAFREAAYRLMRNEQAPTLQITDVDLDQYALSLLERFANP ALKHKTWQIAMDGSQKLPQRMLEGIRVHLARQSEWPLLALGVAGWMRYVSGVDDSGAAID IRDPLREKIGALVEQSTESERVNALLSLHEIFAIDLVENPQFVAAIKLAWQRIAQYGAHQ AVIETLKS >gi|283548478|gb|GG730299.1| GENE 369 421494 - 422684 1477 396 aa, chain + ## HITS:1 COG:YPO1283 KEGG:ns NR:ns ## COG: YPO1283 COG1312 # Protein_GI_number: 16121566 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Yersinia pestis # 1 395 1 395 397 719 85.0 0 MEQTWRWYGPNDPVSLDDVRQAGATGVVTALHHIANGEVWPVEEIKKRQAILAEKGLTWS VVESIPVHEDIKTHSGQYQTWIANYQQSIRNLATCGIDTVCYNFMPILDWTRTDLEYQLP DGSKALRFDQVAFAAFELHILKRQGAEADYTPEEQRQALDYFNAMSEADIEKLTRNIIAG LPGAEEGYTLDQFRARLAEYDGISKDDLRNNMAVFLRAIVPVAEEVGVRLAVHPDDPPRP ILGLPRIVSTIDDMQWLKDTVDSINNGFTMCTGSYGVRADNDLVKMIETFGDRIHFTHLR STCREDNPKTFHEGAHLQGDVDMVSVVAAILSEEQRRKKAGDLRPIPMRPDHGHQMLDDL HKKTNPGYSAIGRLKGLAEVRGVELALKQTQFRDLL >gi|283548478|gb|GG730299.1| GENE 370 422730 - 424202 732 490 aa, chain - ## HITS:1 COG:BH0578 KEGG:ns NR:ns ## COG: BH0578 COG1167 # Protein_GI_number: 15613141 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 2 486 4 467 469 233 32.0 6e-61 MLTPTLDRESRTPLQLQIFQFYFQAIQRGDLLYGDKLPSIRELAQVLNVAKITVVMAYDK LMAAGLIKSRQGIGYEVIFTTPVRTTPAIVPVAQGSPPMKPKAAEIPTDVYAEPGRECYC QMSIPDPNAFPWSSWRKWNNVPSVLKEQLFTRYHSPSGLFSLRDQLVRYLNLSRSINTRA ENIIITNGVQEGLSLLSQLFIIHRTISQKKKCHIVTESPCYSGAWHLFNYYGADITPIAV DDHGLQTENLPESETQLCYVTPAHQYPLGSVLSLERRQALLIWAQRVGAYIIEDDYDAVF TYGENPLPALKAMDYHNRVIYMGTFSKTLGPGGRLGYLICPDELLPAVQNMKALSNSGSQ WLLQQFLAELMQNQVFYTHIGKLACSYAARLTLLRDGLSALFPEGKIAGATAGLHLSLRI DRHPDIIARLQQRCLLAGIRFDTLPDIENGSESAWRAENSDAVMFFGFGGLQIQQIKRVL AVLEQALSQP >gi|283548478|gb|GG730299.1| GENE 371 424369 - 425502 743 377 aa, chain + ## HITS:1 COG:ECs1151 KEGG:ns NR:ns ## COG: ECs1151 COG3005 # Protein_GI_number: 15830405 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 29 372 38 379 390 376 52.0 1e-104 MSWIKKSALWCAFVGAVAMALVIWGTWQGVHYTSTTEFCLSCHSMRTVGEEYKTSVHFRN ASGVRAECKDCHIPPGIVPTLVRKTEALNDLYHTFISPSIDTPEKFAAKRAELAQREWAR MSANNSAACKSCHSYEAMDHGKQSANAAAQMTAATAKDSNCIDCHKGIAHHKPDMSSGFR DRYKQLQRQGESLSNATTLFSLSEKALTATAGSPAGKALLFPATEVKVLQKEGSNVQLEL TGWRESKGRGRVITQYMGKRVFSAVLDDSLMANVKVLQTQVDPDSHQQWQQVSVTAWTSA QGLISNIAPIWEYSDQMLQSTCSACHSTPPTTRYTANGWIAGLKAMSTYYRLNPVEERTL LKYLQTHSSDVSEPNKN >gi|283548478|gb|GG730299.1| GENE 372 425512 - 428010 2410 832 aa, chain + ## HITS:1 COG:STM3822 KEGG:ns NR:ns ## COG: STM3822 COG0243 # Protein_GI_number: 16767107 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 9 821 10 831 850 979 56.0 0 MDIHDFNPSRRRFLSGMLAVGAASALAPNPLISKVWAAGENPEQWIQSGSHFGAFEAKVV NGEWLETRPFKHDKYPCDMLNAVREVVYNPSRVRYPMVRLDWLRKREKSDRSQRGDNRFV RVSWDQALDLFYEELERVQKTYGSSGVFTGLADWQMVGKYHKAGGAMDRGLGLHGSYVTT VGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIQNSNTIVLWGCDPIKNLQIEFLVPDHD AFGYWQQIKEAVAQGKMRVISVDPVRSKSQNYLGCEQLALRPQTDVALMLALAHTLYEEK LYDTAFINDYTVGFEQFLPYLLGESDKQPKNAEWAAEICGLTAEQIRDFARLLVKGRTQF MGGWCAQRMHHGEQYPWMLVVLASMVGQIGLPGGGVGFGWHYNGGGTVTSAGPVLSGLGG IANPPPAKYKADFRGASEHIPTSRIVDCLLEPGKKVAFNGETLTWPDIKMAIYSAANPFH AQQDRNRMIEAWKKLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMA LHQVVKPQYEARHDFDVFAGLCKRFDKEAVYRENRDEMQWIQALYDEGVKMGASLGVSLP DFTTFWQGEGYIEYPAGQPWVRHGEFRDQPDLNPLGTPSGLIEIYSKTIAGFAYEDCPGH PVWMEPFERNHSAKKNKYPLHLQSCHPDKRLHSQLCSSDAFRNTYAVAGREPLYISAQDA AARGLKAGDIARVFNDRGQVLAGVVISPDFTPGVIRIHEGAWYSPQEGGKAGTLCTYGDP NVLSADIGTSQLAQGPSAHTVLVEVERYQQKAPQVTAFGGPETVKEEGGSAA >gi|283548478|gb|GG730299.1| GENE 373 428000 - 428632 475 210 aa, chain + ## HITS:1 COG:VC1720 KEGG:ns NR:ns ## COG: VC1720 COG3381 # Protein_GI_number: 15641724 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Vibrio cholerae # 6 202 8 218 220 105 32.0 5e-23 MQHNQIHQQRADMYQWFSQLLFRELDETQLASLENSDNRAWIISLAAIPGLSGKVKHFER SLTRILRRGSRQLELAADFASLFLLAPPGGVSPYAGHYPHTTAAQERQQMNVLLVEQGLA TRENEPSDHIAIQLALMARMIAKEETLSAQYYFLHHHIMSWAPLLRDACLARDEEGFYPR AVNLIVSFMREDEQYLESLLMDDFYLSSQR >gi|283548478|gb|GG730299.1| GENE 374 429427 - 429999 860 190 aa, chain - ## HITS:1 COG:STM2211 KEGG:ns NR:ns ## COG: STM2211 COG0231 # Protein_GI_number: 16765540 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Salmonella typhimurium LT2 # 1 190 78 267 267 374 98.0 1e-104 MPRANEIKKGMVLNYNGKLLIVKDIDIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDD IVDTVTLSRRGVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEEELLFIPEGGMPDMQVLTW DGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLTTGLVILVPEYLSAGEKIRIHI EERRYMGRAD >gi|283548478|gb|GG730299.1| GENE 375 430157 - 430411 159 84 aa, chain + ## HITS:1 COG:YPO1286 KEGG:ns NR:ns ## COG: YPO1286 COG0727 # Protein_GI_number: 16121569 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster oxidoreductase # Organism: Yersinia pestis # 1 84 1 84 84 101 67.0 4e-22 MECRPDCGACCTAPSISSPIPGMPDGKPANTPCVQLDESLRCKIFASPLRPKVCGGLQPS AEMCGKTTHQAMLYLIELETLTAP >gi|283548478|gb|GG730299.1| GENE 376 430408 - 431589 1219 393 aa, chain - ## HITS:1 COG:STM2207 KEGG:ns NR:ns ## COG: STM2207 COG0477 # Protein_GI_number: 16765537 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 393 1 393 393 641 91.0 0 MHNTPVAATPKAFDLTSAAFLLVAFLTGIAGALQTPTLSLFLTDEVHARPGMVGFFFTGS AVIGILVSQFLAGRSDKKGDRKNLIVFCCVLGMLACVLFAWNRNYFILLFVGVFLSSFGS TANPQMFALAREHADRTGREAVMFSSIMRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA VAFVVCGAMVWLFLPSMSKNVPIATGAVEAPRRNRRDALLLFAICTLMWGTNSLYIINMP LFIINELHLPEKLAGIMMGTAAGLEIPTMLIAGYFAKRLGKRLLMRIAAVAGFFFYAGML LAHSPAVLLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTIRVGWIIAGSLA GIAAEIWNYHAVFWFALVMIIATVACLMRIKDI >gi|283548478|gb|GG730299.1| GENE 377 431957 - 433087 1475 376 aa, chain + ## HITS:1 COG:STM2206_1 KEGG:ns NR:ns ## COG: STM2206_1 COG4668 # Protein_GI_number: 16765536 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol/fructose-specific phosphotransferase system, IIA domain # Organism: Salmonella typhimurium LT2 # 1 288 1 288 288 436 91.0 1e-122 MFQLSVQDIHPGEQAGNKEEAIRQVAAALVQAGNVAEGYVDGMLAREQQTSTFLGNGIAI PHGTTDTRDRVLKTGVQVFQFPQGVTWGEGQVAYVAIGIAASSDEHLGLLRQLTHVLSDD SVAEQLKSATTAEELRALLMGEKQSEQLKLDNETLSLEVAANSLVTLQALNAARLKEVGA VDAAFVARAINEQPMNLGQGIWLNDCAEGNVRSAVAVSRAVTTFDVQGEAAALLVTVAMN DDQPVAVLKRLGDLLLNNKADRLLKADAATVLALLTSDDALTDDVLSAEFVVRNEHGLHA RPGTMLVNTIKQFNSEITVTNLDGTGKPANGRSLMKVVALGVKKGHHLRFTAQGEDAEQA LKAIGEAIAAGLGEGA >gi|283548478|gb|GG730299.1| GENE 378 433087 - 434025 1142 312 aa, chain + ## HITS:1 COG:STM2205 KEGG:ns NR:ns ## COG: STM2205 COG1105 # Protein_GI_number: 16765535 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Salmonella typhimurium LT2 # 1 312 1 312 312 605 98.0 1e-173 MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGG FLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSGFEVTPADWER FVNDSLSWLGQFDMVCVSGSLPTGVSPEAFTDWMTRLRSQCPCIIFDSSREALVAGLKAA PWLVKPNRRELEIWAGRKLPEMKDVIDAAHALREQGIAHVVISLGAEGALWVNASGEWIA KPPSVEVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGITDRPQLA AMMARVDLKPFN >gi|283548478|gb|GG730299.1| GENE 379 434042 - 435730 2195 562 aa, chain + ## HITS:1 COG:STM2204_3 KEGG:ns NR:ns ## COG: STM2204_3 COG1299 # Protein_GI_number: 16765534 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Salmonella typhimurium LT2 # 225 562 1 338 338 530 96.0 1e-150 MKTLLIIDANLGQARAYMAKTLLGAAAQKAHLEIIDNPNDAELAIVLGDTLPADSSLNGK KVWLGDIGRAVAHPELFLSEAKGHAKPYSAPVATAPVASSGPKRVVAVTACPTGVAHTFM AAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAQADLVIVAADIEVDLAKFAGKPMY RTSTGLALKKTKQELDKALEEATPYQPTGKAQSAATEGKKESAGAYRHLLTGVSYMLPMV VAGGLCIALSFAFGIEAFKEQGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLTP GLIGGMLAVSTGSGFIGGIIAGFLAGYVAKLISTKLKLPQSMEALKPILIIPLLSSLVVG LAMIYLIGKPVAGILEGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKAAYAFGVGL LSTQTYAPMAAIMAAGMVPPLALGLATLVARRKFDKAQQEGGKAALVLGLCFITEGAIPF AARDPMRVLPCCIVGGAITGAISMAVGAKLMAPHGGLFVLLIPGAITPVLGYLLAIIAGT LVAGLSYAVLKRPEAEVVAKAA >gi|283548478|gb|GG730299.1| GENE 380 435877 - 436113 245 78 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A1798 NR:ns ## KEGG: SeSA_A1798 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 78 1 78 78 75 58.0 6e-13 MKKAHIFASLSFVTLLLTGCTTTYVMTTTSGSTIETQGKPEQDPGTGLTKYADAYGYHRV IKSSDVKQIDKGKTVLTW >gi|283548478|gb|GG730299.1| GENE 381 436182 - 437480 1175 432 aa, chain - ## HITS:1 COG:STM4325 KEGG:ns NR:ns ## COG: STM4325 COG2704 # Protein_GI_number: 16767574 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Salmonella typhimurium LT2 # 1 431 1 432 433 330 49.0 4e-90 MLWLEIIVVLGAIFFGIRLGGIGIGLCGGLGLAILTLGFGLKIGSPPVDVILIIMTVVVA ASALQAAGGMDYLVRIAGNFMRRNPKYINIIAPIITWSMTIMAGTGFIVFSTLPVIAEVA KESGIRPSRTLAGSVVASQVAISGSPISAAMAAMLTIMEGNGISFIQVMAVCLPASFVAA MVGAFIASRQGCELEDDEVYLERLQKGLVRKYEGQNSITPGARLSVALFMLATVVIVILA AFPQLRPGFDAGSPMNTRDIIIICMLSAACLMVVLCKTSTDAIVLTSTFRAGMSSLAVIL GIVTLGTTFIDAHLTEIKDIAGNILQAYPMLLALVLFGTCALLYSQGATTPLIIPLAVAL GVPTWAILASYVAVTGVFVLPTYPTSLAAMEFDTTGTTRVGKYVLNHPFMLPGLGGIVAG VAFGFIIAPMIA >gi|283548478|gb|GG730299.1| GENE 382 437556 - 438275 336 239 aa, chain - ## HITS:1 COG:STM4510 KEGG:ns NR:ns ## COG: STM4510 COG1794 # Protein_GI_number: 16767754 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Salmonella typhimurium LT2 # 1 228 1 227 244 248 53.0 6e-66 MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMRHGNSP LPAMRDYMHKLEDAGAECIVIPCNTAHFWFNELKESCHTELLSIVETTLNEVKNCGKSRI GLLATNATLYMGLYQKGIESLGLTCVSPDSSSQEKVMESIYCLKAGDIKRAQTLMNEQAE ALFSRGAEVIVLGCTEVPVILAEAVKKSPAKYIDSTGSLVRAGIKWYEKRVGKSHLLAQ >gi|283548478|gb|GG730299.1| GENE 383 438371 - 438583 113 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832405|ref|ZP_06352146.1| ## NR: gi|283832405|ref|ZP_06352146.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 70 1 70 70 134 100.0 2e-30 MFVLMQKLHGRAFFCHLMRLGWRGEPEVLRAEKGCSEWRSKRGNVKNEGLMQKTNHWTLI GNIISGILQA >gi|283548478|gb|GG730299.1| GENE 384 438627 - 439538 623 303 aa, chain + ## HITS:1 COG:yjiE KEGG:ns NR:ns ## COG: yjiE COG0583 # Protein_GI_number: 16132148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 291 8 295 303 353 60.0 3e-97 MKNIETKWLYDFLTLEACRHFSQAAEERNISQPAFSRRIKALESAVGVQLFDRTTTPLQL TEEGKLFHSQTRSLLQQLECNLDELSGHNLLGVPNIKIAAAHSLSLTMLPRLVHSMAAWG EEFVYHVEAIDVVQAVNTLREGKSDFIISFRDEDLMQSPFCGLKVFESELYPVCAADAQG KALFDIYQPQVPFLNYTATSYMGRLVNRHLAEVDGIQARTIFMSSMSELLKNMALDGHGI AWLPAWSIVNELRDQRLVCLDIPELMVPIQAYIYRMDTRLNKTAEHFWRILYNHMPEDLV SLT >gi|283548478|gb|GG730299.1| GENE 385 439570 - 440427 901 285 aa, chain - ## HITS:1 COG:ECs3051 KEGG:ns NR:ns ## COG: ECs3051 COG0648 # Protein_GI_number: 15832305 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Escherichia coli O157:H7 # 1 285 1 285 285 541 91.0 1e-154 MKYIGAHVSAAGGLANAAIRAAEIEATAFALFTKNQRQWRAAPLTTEIIDDFKSACEKYH YTSAQILPHDSYLINLGHPVSDALEKSRDAFIDEMQRCELLGLSLLNFHPGSHLMQIPED ECLARIAESINIALAQTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT CHAFAAGYDLRSAEECEKTFAEFERIVGFNYLRGMHLNDAKSAFGSRVDRHHSLGEGNIG HDAFRWIMQDSRFDGIPLVLETINPDIWAEEIAWLKAQQTEKAVA >gi|283548478|gb|GG730299.1| GENE 386 440499 - 441548 1113 349 aa, chain - ## HITS:1 COG:STM2202 KEGG:ns NR:ns ## COG: STM2202 COG2855 # Protein_GI_number: 16765532 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 349 1 349 349 537 92.0 1e-152 MTELTLQTHRRTAWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILFGMVIGNT VYPQIWKSCDGGVLFAKQHLLRLGIILYGFRLTFAQIADVGVSGIVIDILTLSSTFMIAC FLGQKVFGLDRHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTIAIFL YPAMYPLLSHWFTPETYGIYIGSTMHEVAQVVAAGHAINPDAENAAVIAKMLRVMMLAPF LIILAARVKQLSPATGGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVSMLVTLDTVLLA MAMAALGLTTHVSALKKAGAKPLLMALLLFVWLIVGGGAINFAIHALMA >gi|283548478|gb|GG730299.1| GENE 387 441793 - 442674 786 293 aa, chain + ## HITS:1 COG:STM2201 KEGG:ns NR:ns ## COG: STM2201 COG0583 # Protein_GI_number: 16765531 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 287 1 287 287 522 94.0 1e-148 MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN EHGRLLYPRALALLEQTTEIEQLFREDNGAIRVYASSTIGNYILPAMIARYRQDFPDLPL ELSVGNSQDVINAVLDFRVDIGLIEGPCHSTEIISEPWLEDELVVFAAPSSPLTKGPVTL DQLAASPWILRERGSGTRELVDYLLLSHLPRFQMAMELGNSEAIKHAVRHGLGISCLSRR VIAEQLQAGTLSEVPVPLPRLVRTLWRVHHRQKHLSNAITRFLHYSDQVAQGE >gi|283548478|gb|GG730299.1| GENE 388 442869 - 444338 1924 489 aa, chain + ## HITS:1 COG:lysP KEGG:ns NR:ns ## COG: lysP COG0833 # Protein_GI_number: 16130094 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 489 1 489 489 874 95.0 0 MVSETKTTEAPTLRRELKARHLTMIAIGGSIGTGLFVASGATISAAGPGGALFSYILIGL MVYFLMTSLGELAAYMPVSGSFSTYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLV MSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIIFIVVGVMMIFG IFKGAQPVGWSNWTTGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPEKNIPR AVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVM NAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVVAGLCF LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDVKDLPYRSGLFPLG PIFAFVLCLIITLGQNYEAFLKDSIDWGGVMATYIGIPLFLIIWFGYKLTKGTHFVRYSE MKFPGRVKK >gi|283548478|gb|GG730299.1| GENE 389 444403 - 446388 2273 661 aa, chain - ## HITS:1 COG:YPO1313 KEGG:ns NR:ns ## COG: YPO1313 COG4771 # Protein_GI_number: 16121595 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Yersinia pestis # 10 661 14 665 665 807 62.0 0 MTIPHVKAVAAAVCVASLPSLGHTAEQDTVVVTATGFEQKIQDAPASISVITKQQIEDKA YRDVTDALKDVPGVVVTGGGSSSDISIRGMASQYTLFLVNGKRISTRGTRPNSDNAGIEQ GWLPPLESIERIEVIRGPMSSLYGSDAMGGVINVITKKVSNTKAWTGSLHGDATFQEDRD SGDIYQTNAYASGPLIDGLLGAKVTGLFSHRAEDEIVNGYNEQRMRNGGITLNFTPDDKN DIDFDYARELQDRDSTPGKSKAEENCRNGSCKPNSKSESKYVHTTYSLTHSGYYDDFNAT SYIQQEETENPGRQMKSYNTIFNNQNQVFLGAHTLTVGGQYRYEKLRDNGNQLQAADGLN KLTRWSWALFAEDEWTITDTFALTGGLRMDKDENYGDNWTPRGYGVWHLSDQWTLKGGVS AGYRAPDLRQSSASWGQVTGGGRLNGIIVGNPDLKPEKSLSEEIGLLWDNGNDLNAGVTL FNTDFKNKITEVRRCNSSADPACTIGNTSYDFVSDRVNVDKANMRGVESTFGWKITSDVN WTANYTYTESEQKSGQFSGQPLNKMPKHMFNTTVDWQATQDLGFWSRLNLRGKTSEYLSR TSMAQGTPSYTQVDVGLRYYATKDLLMTAGVYNVLDKQIDYDTYDTVLDGRRYTVGLTYS F >gi|283548478|gb|GG730299.1| GENE 390 446733 - 448055 1072 440 aa, chain - ## HITS:1 COG:STM2198 KEGG:ns NR:ns ## COG: STM2198 COG2271 # Protein_GI_number: 16765528 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Salmonella typhimurium LT2 # 1 440 1 440 440 735 91.0 0 MSLKSFIFSQADKPVVKEKKEIDRTYKKFRIEIITSVFISYAVFYLTRKNFSAAMPAMLS DTALTAEDFAIMSSLFYILYGSMKFVGGMLVDKINPKAMTGPVLIGVGIVNILFGFSDSI AAFYVLYSLNAILQGTSFPPMAKIMASWFSKNERGRWWAVVEAAHNIGGSLAPLLTSFAI VWSSSWKMGFYVPGAISLLMGVVALFTIKDRPGTLGLPNVGEWRKDPTELAQVKASPVNL PFWQIFVKYILINPLVWIIIVGDMSVYIARTILNDWPQIYYSQVHGWSLIKANSIISWFE AGGLVGGLLAGYLSDFMFKSNRWMTGLVFALMLCVCIILIPLVQDTSYTITAMLFTIMGF ALYGPHMLFAVGCLDVTHKDAAGSITGFRGLFSYVGAALAGVPVILVKNSWEWSGVYLYA VIAILLTTLSLALLAKFHRL >gi|283548478|gb|GG730299.1| GENE 391 448087 - 448974 557 295 aa, chain - ## HITS:1 COG:STM2197 KEGG:ns NR:ns ## COG: STM2197 COG0560 # Protein_GI_number: 16765527 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Salmonella typhimurium LT2 # 1 295 1 295 295 371 62.0 1e-102 MTIIYFISVKEPEKLHAWLHEAFLNTNNKQNQCTLEQLHIAAINKSYFKLSIPDKSFTND IYNKMRVTSFTQQFDFFIKPQILPASGIVAFDMDSTFIEEEGVDEIARALGISTQIARLT QQAMEGKLDFNSSFTRRIGMLKGTHLDVINTVCDQMTASPGITAILPILKQRGFKTAIIS GGLDIFTRRLQEKYQLDYVFSNTVEISNGELTDNITAPIMNAENKKKKLELLAETLQVSQ HNIIACGDGANDIPMLTYAGTGIAWKAKPAVRDLIKNQINFHGFESLLFYIENGL >gi|283548478|gb|GG730299.1| GENE 392 449191 - 450573 741 460 aa, chain + ## HITS:1 COG:STM2196 KEGG:ns NR:ns ## COG: STM2196 COG1760 # Protein_GI_number: 16765526 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Salmonella typhimurium LT2 # 1 451 1 455 455 706 77.0 0 MESCVDIFKVVIGPSSSRTVGPMRAAFNFISQLKLQEILPLTRKIEVELYGALSLSRKCH NVDIALYLGLLGNQPDDVDLRQQMEAIKRAEQNGILAISPSVVVAVTILANQQPHSGHPY AMTFRARDDYFTLYEETWFSTGAGQVCKPGEQPSVASTQESVSPFAFQHAAQLQALCQRN GLSVAALMMKNELLAHSQATLEDYFRQIWAVMQQAVHRGLHTEGLLPGPYQVPRRACALH KSLSMRPSANDFLTNLNWVNAFAIAVSEENAAGGRVVTAPTNGASGIIPAVLSWYDKFVC ELDSASVIRFFLTAGAIALLFKQNASILGSEVGCQGEIGVASSMAAAGLAELMGASVAQV LNAAEIAMEHHLGLTCDPVGGQVQIPCVERNAISSVKAINAATMAMSRISEPCVSLDEVI AAMYETGKDMSAKYRETYHGCLGKIQPKKRGGWHEISHHE >gi|283548478|gb|GG730299.1| GENE 393 450551 - 450940 323 129 aa, chain + ## HITS:1 COG:STM2195 KEGG:ns NR:ns ## COG: STM2195 COG1396 # Protein_GI_number: 16765525 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 129 1 129 129 194 78.0 3e-50 MKYHTMNNDEIILSLCARIRETRISLALTQQQFADSAQVGVATIKRIEKGGGLNLDTLIS MLRALNKLHHLDAILFESEVRNFSEGYEGSESTSRLQVRQQAADLNRKASAPQSEEISYS AAIENTLYW >gi|283548478|gb|GG730299.1| GENE 394 450941 - 451777 744 278 aa, chain - ## HITS:1 COG:yeiG KEGG:ns NR:ns ## COG: yeiG COG0627 # Protein_GI_number: 16130092 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli K12 # 1 278 1 278 278 517 90.0 1e-147 MEMLEEHRCFEGWQQRWRHDSTTLNCAMTFSIFLPPPRENAPPPVLYWLSGLTCNDENFT TKAGAQRVAAELGIVLVMPDTSPRGEQVANDDGYDLGQGAGFYLNATRQPWTTHFRMYDY LRDELPALIQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSISAFAPIVNPCRVPWG EKAFRAYLGEDKSLWAEWDSCALMLASKPEDAIPTLIDQGDSDQFLADQLQPAVLAETAR QTAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK >gi|283548478|gb|GG730299.1| GENE 395 452088 - 452756 771 222 aa, chain + ## HITS:1 COG:ECs3045 KEGG:ns NR:ns ## COG: ECs3045 COG0302 # Protein_GI_number: 15832299 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 397 96.0 1e-110 MSSLSKEAALVHEALVARGLETPLRPPVQEMDNETRKRLISGHMTEIMQLLNLDLSDDSL METPHRIAKMYVDEIFSGLDYANFPKITVIENKMKVDEMVTVRDITLTSTCEHHFVTIDG KATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILTALQTLLGTNNVAVSIDAVH YCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVRHHN >gi|283548478|gb|GG730299.1| GENE 396 452771 - 453928 1220 385 aa, chain + ## HITS:1 COG:Z3408 KEGG:ns NR:ns ## COG: Z3408 COG2311 # Protein_GI_number: 15802708 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 EDL933 # 1 385 44 428 428 576 83.0 1e-164 MERNVTLDFVRGVAILGILLLNINAFGLPKAAYLNPAWYGNITLPDAWSWAVLDLFAQVK FLTLFALLFGAGLQMLLPRGKRWIQSRLTLLALLGFIHGLLFWDGDILLAYGLIGLICWR LIRDAPSVKSLFNTGILLYLVGIGVLLLLGVISGGETSRAWTPDASALLYEKYWKVNGGL EAVSNRVDMMSNSLLALGAQYGWQLAGMMLLGAALMRSGWLKGQYSLQHYRRTGLLLVMI GMAINLPAIIIQWHLDWAYRWCAFLLQAPRELGAPLQTIGYAALMFGFWPQLSRLKWVIA IACVGRMALTNYLLQTLICTTLFYQFGLFMKFDRLELLCFVIPVWAVNLLLSVIWLRFYR QGPVEWLWRQLTLRASGTSLPRTSR >gi|283548478|gb|GG730299.1| GENE 397 454073 - 455098 1105 341 aa, chain + ## HITS:1 COG:STM2191 KEGG:ns NR:ns ## COG: STM2191 COG1609 # Protein_GI_number: 16765521 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 340 1 340 340 612 91.0 1e-175 MVTIRDVARQSGVSVATVSRVLNNSALVSPDTREAVMKAVTQLGYRPNANAQALATQVSD TIGVVVMDVSDAFFGALVKAVDMVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALI VHSKALSDRELAEFMDQIPGMVLINRLVAGYAHRCVCLDNISGAKMATRMLLNNGHQRIG YLASSHRIEDDAMRKEGWFTALKEQGIDAAESWIGTGSPDMQGGESAMVELLGRNLQLTA VFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKMAT ELALQGAAGTLDPEASHCFMPTLVRRHSVALRQNAAPITNS >gi|283548478|gb|GG730299.1| GENE 398 455391 - 456389 1285 332 aa, chain + ## HITS:1 COG:mglB KEGG:ns NR:ns ## COG: mglB COG1879 # Protein_GI_number: 16130088 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 332 1 332 332 573 96.0 1e-163 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLL MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPIVFFNKEPSRK ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANPNWDLNKDGKIQFVLLKGEPGHPDAEA RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWMSGPNANKIEVVIANNDAMAMG AVEALKAHNKTSVPVFGVDALPEALALVKSGAMAGTVLNDANNQAKATFDLAKNLADGKG AADGTNWKIDNKIVRVPYVGVDKDNLAEFTNK >gi|283548478|gb|GG730299.1| GENE 399 456461 - 457981 195 506 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 279 482 17 215 245 79 25 5e-13 MVSTHTQSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF GIYQKDSGSILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF VDQEKMYRDTKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYDAKIVIMDEPTSSL TEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITVLRDGQWIATQPLEGLDMDK IIAMMVGRSLNQRFPDKENKPGEVILQVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGA KRTDIVETLFGIREKSSGTITLHGKKINNHSANEAINHGFALVTEERRSTGIYAYLDIGF NSLISNIHNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVVIGRW LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMS NGLVAGIVDTKTTTQNEILRLASLHL >gi|283548478|gb|GG730299.1| GENE 400 457997 - 459007 1347 336 aa, chain + ## HITS:1 COG:STM2188 KEGG:ns NR:ns ## COG: STM2188 COG4211 # Protein_GI_number: 16765518 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type glucose/galactose transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 336 1 336 336 477 97.0 1e-134 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVA GLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIIVVVLIVCVIGAIIG LVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFIALGS FRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGV FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVIN YGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYARKK >gi|283548478|gb|GG730299.1| GENE 401 459065 - 460300 1295 411 aa, chain - ## HITS:1 COG:STM2187_1 KEGG:ns NR:ns ## COG: STM2187_1 COG0167 # Protein_GI_number: 16765517 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 326 1 326 326 674 97.0 0 MLTKDLSITFCGVTFPNPFCLSSSPVGNCYEMCAKAYDTGWGGIVFKTIGFFIANEVSPR FDHLTKEDTGFVGFKNMEQIAEHPLEENLAAIRRLKQDYPDKVLIASIMGENEQQWQELA RLVEEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSSLPMLAKMTPNIG DMCEVALAAKRGGADGIATINTVKSITNIDLNRKIGMPVVNGKSSISGYSGKAVKPIALR FIQQLRMHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMTSGL SHYLADQGFNSLEEMVGLANANIIPAEDLDRSYIVYPNIHLDKCVGCGRCYISCYDGGHQ AMEWNEETRTPHCDTEKCVGCLLCGHVCPVACIDLGEVKFKPGEKEHALTL >gi|283548478|gb|GG730299.1| GENE 402 460294 - 461535 755 413 aa, chain - ## HITS:1 COG:STM2186 KEGG:ns NR:ns ## COG: STM2186 COG0493 # Protein_GI_number: 16765516 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 413 1 413 413 724 85.0 0 MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQDCPAQTDPGKFIRSIYFRNFKGAA ETIRENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQRFITDFEQQTAMKIYQPA TKTLGKVAIIGAGPAGLQASVTLSNLGYDVTIYEKQAQPGGWLRYGIPEFRLPHSVLDNE IARIVEMGVTIKCNCEIGDPLAVEQLKTEYRAVLVAIGMSYGSTLPMFDQAENVEIAVDF LQRARQSGGNITVAQSALIIGGGDVAMDVASTLKLLGCPSVTCVAREELADFPASDKEFN STQALGVSIIDGFTPVAVSGKRVTFKHVRLPGELTLEAEQIILAVGQHAELENFAALQPQ HNLIDTHHYQTADPVLFAAGDIVQGDKTVVYAVKTGKEAAQAIHHYLEGACSC >gi|283548478|gb|GG730299.1| GENE 403 461769 - 462008 115 79 aa, chain - ## HITS:1 COG:no KEGG:SG2221 NR:ns ## KEGG: SG2221 # Name: b2145 # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 79 3 81 81 116 70.0 2e-25 MDVQTLFVVLAFLLIPVFCFREAWKGWRSGAVDKIKKNAREPVYAYRDQEPLQFWSYVLV YAGCGCLSFGMVIYLVFYR >gi|283548478|gb|GG730299.1| GENE 404 462011 - 462730 836 239 aa, chain - ## HITS:1 COG:ECs3036 KEGG:ns NR:ns ## COG: ECs3036 COG2949 # Protein_GI_number: 15832290 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 437 95.0 1e-122 MLKRVFYSLLVLSGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTG VINQYYRYRIQGALNAYNSGKVNYLLLSGDNAQQNYNEPMTMRKDLIAAGVDPADIVLDY AGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLTVRV REFGARFGALADLYIFKREPRFLGPLVPIPAMHQVPDDAQGYPAVTPEQLLELQKKQGK >gi|283548478|gb|GG730299.1| GENE 405 462866 - 463750 885 294 aa, chain - ## HITS:1 COG:STM2183 KEGG:ns NR:ns ## COG: STM2183 COG0295 # Protein_GI_number: 16765513 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Salmonella typhimurium LT2 # 1 294 1 294 294 501 89.0 1e-142 MHPRFQTAFAQLADNLQSALAPVLADAHFPAMLTAEQVSLLKRESGLDEDALAFALLPLA AACARTPLSNFNVGAIARGISGTWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGEKGLA AITVNYTPCGHCRQFMNELNSGLDLRIHLPGREPHALRDYLPDAFGPKDLDIKTLLMDDQ DHGFALQGDALAQAAIAAANRCHMPYSNSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALNLLSLNGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCNNIERVLLG >gi|283548478|gb|GG730299.1| GENE 406 463899 - 464594 771 231 aa, chain - ## HITS:1 COG:STM2182 KEGG:ns NR:ns ## COG: STM2182 COG1346 # Protein_GI_number: 16765512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Salmonella typhimurium LT2 # 1 230 1 230 231 364 92.0 1e-101 MMTYIWWSLPLTLAVFFGARKLAARFKMPLLNPLLVAMVVIIPILMLTGIPYDHYFKGSE VLNDLLQPAVVALAYPLYEQLHQIRARWKSIIAICFAGSVVAMVTGTSIALLMGASPEIA ASIMPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLA MGTASHALGTARCAELDYQEGAFSSLALVICGIITSLVAPFLFPVILAVVG >gi|283548478|gb|GG730299.1| GENE 407 464591 - 464989 546 132 aa, chain - ## HITS:1 COG:ECs3033 KEGG:ns NR:ns ## COG: ECs3033 COG1380 # Protein_GI_number: 15832287 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Escherichia coli O157:H7 # 1 132 1 132 132 212 93.0 2e-55 MSKSLNIIWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQVLPAKWV NPGCYVLIRYMALLFVPIGVGIMQYFDLLREQFGPVVVSCTISTLVVFLVVSWSSHLVHG ERKIVGQKGSKE >gi|283548478|gb|GG730299.1| GENE 408 465121 - 465363 265 80 aa, chain - ## HITS:1 COG:STM2180 KEGG:ns NR:ns ## COG: STM2180 COG0583 # Protein_GI_number: 16765510 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 80 223 302 302 138 87.0 3e-33 MLPENTIESASINVSTNLLQSSDMVSILSLRLAQRYAAQGQLAILNLPKIEQKGSVGVFW RNNETPTTALNRFLYYLSQV >gi|283548478|gb|GG730299.1| GENE 409 465396 - 466028 420 210 aa, chain - ## HITS:1 COG:ECs3032 KEGG:ns NR:ns ## COG: ECs3032 COG0583 # Protein_GI_number: 15832286 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 198 17 222 318 345 84.0 4e-95 MANWAQKLKLHHLQTLIALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSK GLRPSEGGKLLLQHAQRLINDMERSQYEIARFKQGGLVGSLKIGCSPVATDCVSQAILGL LTELPTLHLNIEEKVMTPLLHDLLAGSVDVVVGRVGGRALQLPLNYQVLYTEPVCFVARP TIRWHSIPCSPGTIWLTGAGSSGRREPPSG >gi|283548478|gb|GG730299.1| GENE 410 466155 - 467513 1539 452 aa, chain + ## HITS:1 COG:ECs3031 KEGG:ns NR:ns ## COG: ECs3031 COG0477 # Protein_GI_number: 15832285 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 452 1 452 452 747 92.0 0 MTQQRDLQALIDSAPVGKTQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLA PLFGAGLLGLTAGALLCGPLSDRFGRKRVIELCVALFGALSLISAFSPDLQTLVILRFLT GLGLGGAMPNTITMTSEYLPARRRGALVTMMFCGFTLGSAMGGIVSAQLVPVIGWHGILV LGGVLPLMLFVALLFALPESPRWQVRRQLPQSVIARTVSAITRERYDDTHFYLNEGSAIA KGSIRQLFVGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASWVTAAFQI GGTLGALALGVLMDKYNPFRVLAVSYALGAVCIVMIGLSENGLWLMALAIFGTGIGISGS QVGLNALTATLYPTQSRATGVSWSNAIGRCGAIVGSLSGGVMMAMNFSFDNLFFIIAVPA AISAVMLTLLTVVVRQSASVPDALPRAGIVNE >gi|283548478|gb|GG730299.1| GENE 411 467525 - 468562 1199 345 aa, chain + ## HITS:1 COG:STM2178 KEGG:ns NR:ns ## COG: STM2178 COG3435 # Protein_GI_number: 16765508 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Gentisate 1,2-dioxygenase # Organism: Salmonella typhimurium LT2 # 1 345 1 345 345 662 91.0 0 MSELNQDVKNSRQQFYQHISGQNLTPLWESLHRLVPPTPNAHCAPAYWNYQEIRPLLLES GDLIGAKEAIRRVLVLENPMLRGQSSITPTLYAGLQLIMPGEVAPSHRHNQSALRFIVEG KGAFTAVDGERTQMHEGDFILTPQWRWHDHGNPGSEPVVWLDGLDLPLVNLLGCGFAEDY PEDQQPVTRKEGDYLPRYAANMLPLRHQKGNSSPIFNYRYDRSREALHDLTRLGDADEWD GYKMRYVNPVTGGYPMPSMGTFLQLLPKGFSSRMARTTDSTIYHVVEGSGQVTIGNETFN FSAKDIFVAPTWHGVSFQTREDTVLFSFSDRPVQEALGLFREARY >gi|283548478|gb|GG730299.1| GENE 412 468578 - 469279 898 233 aa, chain + ## HITS:1 COG:STM2177 KEGG:ns NR:ns ## COG: STM2177 COG0179 # Protein_GI_number: 16765507 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Salmonella typhimurium LT2 # 1 233 1 233 233 451 93.0 1e-127 MTQYVFEPQAPVTVPVVGSDEQFPVRRVYCVGRNYAAHAREMGFDPDREPPFFFCKPADA VVPVAAGQTLELPYPSQTDNYHYEIELVVAIGKKGSDIPLEKAHEYIWGYATGLDMTRRD RQMEMRQMGRPWEIGKAFDLSAPIAPLHKASEIADVNHAPIWLQVNGDDRQRSDIRHLIW SVNETISYLSGFFELQPGDLIYTGTPEGVGAVVKGDVITGNVDGLTPIAVKIV >gi|283548478|gb|GG730299.1| GENE 413 469288 - 469932 569 214 aa, chain + ## HITS:1 COG:STM2176 KEGG:ns NR:ns ## COG: STM2176 COG0625 # Protein_GI_number: 16765506 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 1 214 1 214 214 407 89.0 1e-113 MKLYSFFNSSASYRVRIALALKGLDYQTVGVNIRIGQQNELAYRRMNPVGLVPTLVTDDG ESLGQSLAITDWLDGHFPQSPLLPADFPMRSRVLEIVYAIACDIHPVNNLRVLRYLSEEL KVSEEDKKRWYAHWIQQGLSAVEQMLRQSHSGTFCVGDAPTLADCCLIPQWANALRMGCD LSAYPRCKAVYDACIQLPAFIAAAPENQQDKIPA >gi|283548478|gb|GG730299.1| GENE 414 469947 - 471140 1285 397 aa, chain + ## HITS:1 COG:STM2175 KEGG:ns NR:ns ## COG: STM2175 COG0654 # Protein_GI_number: 16765505 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 19 397 19 397 397 734 93.0 0 MAKVTRAIIVGGGIGGAATALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLG VGEVARQRAVFTDHITMMDAVNAQEVVRIETGQAFRDHFGGPYAVIHRVDIHASVWEAAL VHPNVEYRTSTNVVDIRQTENDVTVFDEHGNSWTADILVGCDGVKSVVRQSLLGDAPRVT GHVVYRAVIDCDDMPEDLRINAPVLWAGPHCHLVHYPLRGGKQYNLVVTFHSRQQEEWGV KDGSKEEVLSYFAGIHPRPRQMLDKPTSWRRWSTADREPVEKWGTDRITLVGDAAHPVAQ YMAQGACMALEDAVTLGKALQQCDGDAGDAFALYEAVRIPRTARIVWSTREMGRVYHAAG VERQVRNLLWKGKSQAEFYRGMEWLYGWKEDNCLLPR >gi|283548478|gb|GG730299.1| GENE 415 471202 - 472152 998 316 aa, chain + ## HITS:1 COG:ECs3026 KEGG:ns NR:ns ## COG: ECs3026 COG0042 # Protein_GI_number: 15832280 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli O157:H7 # 1 315 1 315 316 589 89.0 1e-168 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPAKVFHRLCPELHNDSRTL SGTRVRIQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKLVNGSGGGATLLKDPELIY RGAKAMREAVPDHLPVTVKVRLGWDNSDRQFEIADAVQQAGASELAVHGRTKEQGYKAEH INWQAIGEIRQRLTIPVIANGEIWDWQSAQDCMAISGCDAVMIGRGALNIPNLSRVVKYN EPRMPWPDVVTLLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYSEATTLFQEIRALNNS PDIARAIQAIDIAKLY >gi|283548478|gb|GG730299.1| GENE 416 473261 - 474628 1302 455 aa, chain + ## HITS:1 COG:STM2172 KEGG:ns NR:ns ## COG: STM2172 COG1538 # Protein_GI_number: 16765502 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 454 25 478 478 747 88.0 0 MHDNRQSLSQQTPAANVDSALPAALKNGWPDSQWWKAYNDPQLNALIDSTLKNSPDMQVA EQRIQLAEAQAKAVEAQDGPEIDFSADVERQRMSAEGLMGPFAITDPAAGTTGPWYTNGT FGLTAGWNLDLWGKNRAEVTARIGAVKAREAEREQTRQLLASGVSRLYWEWQTQAALKSV LTQIKNEQQNVINVDRQLYQNGITSSVEGVETDIDSSKTDQQLNDVNGKMKVIEARLSAL TNSQSTVLKLHPSKLPTVESTLPSQLGYSLLARRPDLQAAHWYIESSLSSIDAAKAAFYP DVNLMAFLQQDALHLSDLFRHSAQQMGVTAGLTLPIFDSGRLNANLDITKAQSNLTVANY NKAVVDAVNDVARAASQVETLAQKNQHQQQIEHDAQRVVGLAQARFNAGIIAGSRVSEAK IPALREQCNGLVLQGQWLDASIQLTSALGGGYHAS >gi|283548478|gb|GG730299.1| GENE 417 474653 - 475225 687 190 aa, chain - ## HITS:1 COG:STM2170 KEGG:ns NR:ns ## COG: STM2170 COG0586 # Protein_GI_number: 16765500 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 183 10 192 198 283 79.0 2e-76 MDINHYVAQYGYAALVIGSLAEGETITLLGGVAAHQGVLKFPLVVLSVALGGMIGDQLLY LLGRRFGGKILRRFSRHQAKINDAQKMIQRRPYLFVVGTRFMYGFRVIGPLLIGASHLPP KIFLPLNILGALVWALIFTTLGYAGGEVIAPWLHNLDQHIKHWIWLVLVIVLVVGARWWL KKRSSKKTAR >gi|283548478|gb|GG730299.1| GENE 418 475468 - 476055 593 195 aa, chain + ## HITS:1 COG:no KEGG:CKO_00659 NR:ns ## KEGG: CKO_00659 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 195 1 195 195 332 92.0 4e-90 MNHVWGLFSHPDREMHVINSENESVSHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGNI LQLSLVTGLAMAILFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLS GFVALYPLVWLCALVGTIALFYTGYLLYLGIPTFLNITREEGLSFSSSTLAIGVLVLEVL LAITVILWGYGYRLF >gi|283548478|gb|GG730299.1| GENE 419 476236 - 477183 1093 315 aa, chain + ## HITS:1 COG:STM2168 KEGG:ns NR:ns ## COG: STM2168 COG1686 # Protein_GI_number: 16765498 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Salmonella typhimurium LT2 # 1 315 1 315 315 509 93.0 1e-144 MLKFRVSLLSLALVLAVPFAPQAVAKTATTVAASQPEIASGSAMIVDLNTNKVIYSNHPD LVRPIASITKLMTAMVVLDARLPLNEKLKVDISQTPEMKGIYSRVRLNSEISRKDMLLLA LMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTQTRFVEPTGLSIHNVSTARDLTK LLIASKQYPLIGQLSTTREDMATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGH CLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQM AAAGSAKGEQTAQND >gi|283548478|gb|GG730299.1| GENE 420 477250 - 478959 1784 569 aa, chain - ## HITS:1 COG:STM2167 KEGG:ns NR:ns ## COG: STM2167 COG0277 # Protein_GI_number: 16765497 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 569 1 570 576 1106 92.0 0 MSSITTDNKAFLNELTRLVGHSHLLTEPAKTARYRKGFRSGQGDALAVVFPGSLLELWRV LNACVAADKIILMQAANTGLTEGSTPSGNDYDREIVIISTLRLDKLHVIGKGEQVLAWPG TTLYSLEKALKPFGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLFARIDE QGKLQLVNHLGIELGQTPEQILSKLDDERIKDDDVRHDGRHAHDHDYVTRVRDIEADTPA RYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILAKFE HLPVAGEYMHRDIYDIAEQYGKDTFLMIDKLGTDKMPFFFTLKGRTDAMLEKVKFFRPHF TDRAMQKFGHLFPSHLPARMKSWRDKYEHHLLLKMAGGGVAEAQNWLSEFFKTAEGDFFA CTPEEGSKAFLHRFAAAGAAIRYQAVHADEVEDILALDIALRRNDTEWYEHLPPEIDSQL VHKLYYGHFMCYVFHQDYIVKKGVDAHALKEQMLELLRERGAQYPAEHNVGHLYEAPETL TRFYRENDPTNSMNPGIGKTSKQKFWKES >gi|283548478|gb|GG730299.1| GENE 421 479192 - 481489 2828 765 aa, chain + ## HITS:1 COG:bglX KEGG:ns NR:ns ## COG: bglX COG1472 # Protein_GI_number: 16130070 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Escherichia coli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gi|283548478|gb|GG730299.1| GENE 422 481722 - 482639 1082 305 aa, chain + ## HITS:1 COG:STM2165 KEGG:ns NR:ns ## COG: STM2165 COG1732 # Protein_GI_number: 16765495 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Salmonella typhimurium LT2 # 1 305 1 305 305 519 90.0 1e-147 MIISKFGVGSLALLAAISTPLQAASPVTVGSKIDTEGALLGNIILQVLESHGVKTVNKVQ LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAQAGFDKVKKLDAEQNKLVW LTPAPANNTWTIAVRQDVAQKNKLVSLADLGRYLKEGGTFKLAASAEFIERADALPAFEK AYEFKLNQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGVQ PIYAPAPVVRESVLKAYPQMEEWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYLKQ KGWVK >gi|283548478|gb|GG730299.1| GENE 423 482688 - 483821 941 377 aa, chain + ## HITS:1 COG:STM2164 KEGG:ns NR:ns ## COG: STM2164 COG1174 # Protein_GI_number: 16765494 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Salmonella typhimurium LT2 # 16 377 28 389 389 441 77.0 1e-123 MLLLLVLLTVAAAALPFISYAPNRLVSGEGRQLWDIRPDMAWGLAVACLLLFFLCFVSGK SGSVLTLVVTELLVITALFIAGTTATNLALTGSPLARTSLGSGFWLGLGLMLLAASDAIR RITRQALWRWVLHAQLFLMPIVLLLSGTFNDLSLLKEYANRQDVFNDALAQHLTILLGTV IPALLIGVPLGVWCSFSGARQGPVFAVLNIIQTIPSVALFGLLIAPLAGLVKYFPWLGSL GVAGTGLTPALIALVLYALLPLVRGVVAGLNQVPRDVLESARAMGMSARQRFISVQFPLA LPVFLRSLRVVMVQTVGMAVIAALIGAGGFGALVFQGLLSSAVDLVLLGVIPVVVLAVLI DALFDLGLALLKGTNND >gi|283548478|gb|GG730299.1| GENE 424 483814 - 484761 1030 315 aa, chain + ## HITS:1 COG:STM2163 KEGG:ns NR:ns ## COG: STM2163 COG1125 # Protein_GI_number: 16765493 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Salmonella typhimurium LT2 # 1 314 1 314 315 525 85.0 1e-149 MIEFSQVSKTYGQHKAVDDLNLHLAQGSFSVLIGTSGSGKSTTLKMINRLVEHDSGQIRF AGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQLQKWSRSRIDDRTDELMAL LGLEASLRHRYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRI HRLLGRTIVLVTHDIDEALRLAEHLVLMDAGKVVQQGTPLSMLTAPANDFVQTFFGRSEL GVRLLSLRTVGDFIRRGEHADGEPLVAEMTLRDALSMFVARGCDVLPVVTPQGVSCGTLH FRDLLSEMPTRETSC >gi|283548478|gb|GG730299.1| GENE 425 484745 - 485476 705 243 aa, chain + ## HITS:1 COG:ECs3015 KEGG:ns NR:ns ## COG: ECs3015 COG1174 # Protein_GI_number: 15832269 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Escherichia coli O157:H7 # 1 243 1 243 243 327 83.0 1e-89 MKRLADPLLWLVVLFLLLLVGLPYSQMLFSSLFPELPRPVYQQESFTALALSHFALVGIS SLIAVLIGTGAGIAVTRPWGAEFRPMVETIAAVGQTFPPVAVLAIAVPVMGFGLEPAVIA LILYGVLPILQATLAGLGGISASVMEIASGMGMSRGQRLRKVELPLAAPVILAGIRTSVI INIGTATIASTVGANTLGTPIIIGLSGFNTAYVIQGALLVALAAVIVDRGFERLASYLTR HVK >gi|283548478|gb|GG730299.1| GENE 426 485457 - 485564 137 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSAAKIGVITLFLLMAIGGIGGVMLAGYTFILRAG >gi|283548478|gb|GG730299.1| GENE 427 485616 - 486347 566 243 aa, chain - ## HITS:1 COG:yehV KEGG:ns NR:ns ## COG: yehV COG0789 # Protein_GI_number: 16130065 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 243 1 243 243 432 90.0 1e-121 MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWINNG VQVSKVKMLLSSESMDVHNGWREQQETLLSYLQSNNLHSLRMWIKERGQDYPAQTLNTHL FTPLRRRLQCQQPILQALLGILDGVLINYIAICLASARKKQGKDALVVGWNIHDTTRLWL EGWVASQQGWRVDVLAHSLNQLRPELFEGRTLLVWCGENQTPAQQQQLSEWRALGHDIYP LGI >gi|283548478|gb|GG730299.1| GENE 428 486573 - 488258 1504 561 aa, chain + ## HITS:1 COG:STM2159 KEGG:ns NR:ns ## COG: STM2159 COG3275 # Protein_GI_number: 16765489 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Salmonella typhimurium LT2 # 1 561 1 561 561 1002 94.0 0 MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTIRLPHKLLCYVTFSIFCILGTYF GLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLL GGLVHSVLTRRGRTDKVFSPLTAGAITFVAELVQMLIILLIARPFDDAFRLVSNIAAPMM VTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLY EELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSSYTLRAIETGEVVYADGNEVPYRCS LHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQY ERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRP SEIVTLADEIEHVNAYLQIEKARFQSRLQVTLTVPDELAHQQLPAFTLQPIVENAIKHGT SQLLDTGEVSITARREGQYLMLDIEDNAGLYQPTSEASGLGMNLVDKRLRERFGDDFGIS VACEPDRFTRITLRLPLEELA >gi|283548478|gb|GG730299.1| GENE 429 488255 - 488974 806 239 aa, chain + ## HITS:1 COG:ECs2936 KEGG:ns NR:ns ## COG: ECs2936 COG3279 # Protein_GI_number: 15832190 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Escherichia coli O157:H7 # 1 239 6 244 244 433 93.0 1e-121 MIKVLIVDDEPLARENLRILLQEQSDIEIVGECSNAVEAIGAVHKLHPDVLFLDIQMPRI SGLEMVGMLDPEHRPYIVFLTAFDEYAVKAFEEHAFDYLLKPIEEARLEKTLIRLRQERT RQDVSLLPENQQALKFIPCSGHSRIYLLQMDDVAFISSRMSGVYVTSSDGKEGFTELTLR TLESRTPLLRCHRQYLVNMAQLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL >gi|283548478|gb|GG730299.1| GENE 430 489021 - 489491 551 156 aa, chain + ## HITS:1 COG:yehS KEGG:ns NR:ns ## COG: yehS COG4807 # Protein_GI_number: 16130062 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 156 1 156 156 242 75.0 2e-64 MLSNDILRSLRYTLKANNNDMVRILALADMESTSAGFDTWMTKEDEDGFVRCPDIILSGF LNGLIYHLRGKDDSAPELAIERRVNNNTVLKKLRIAFLLKTDDILTIMTEQKFRVSMPEI TAMMRAPDHKNYRECGDQFLRYFLRGLTSRVHNAKA >gi|283548478|gb|GG730299.1| GENE 431 489535 - 489993 473 152 aa, chain - ## HITS:1 COG:ECs2934 KEGG:ns NR:ns ## COG: ECs2934 COG4808 # Protein_GI_number: 15832188 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 152 5 157 157 181 69.0 3e-46 MNALQKLLSLAAASVLVFSLAGCGDKEETKTFNANVNGSDITVSYTFKGDKVLKQTSESK ISYASVGASNKEEAAKVFDALSAKYHNIPGIEEKLTYTDTYAQENVTIDMEKVDIKSLQG ISGMKLSENADKNISMKQMQTIMEAAGFKEVK >gi|283548478|gb|GG730299.1| GENE 432 490207 - 492240 2452 677 aa, chain - ## HITS:1 COG:STM2155_1 KEGG:ns NR:ns ## COG: STM2155_1 COG0143 # Protein_GI_number: 16765484 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 567 1 567 567 1178 97.0 0 MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHQVNFICADDAHGTPIM LKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENRELSELIYTRLKENGFI KNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSG ATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFEAGLQQWDISRDSPYFG FEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTVSFDEYWKKDSDAELYHFIGKDIVY FHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLKHFDADSLRYYY TAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFIAKRFDGVLAAELADPALYK TFTDAAAVIGEAWESREFGKAIREIMALADVANRYVDEQAPWVVAKQEGRDADLQAICSM GINLFRVLMTYLKPVLPTLAERVEAFLNSELGWDAIEQPLLGHKVNTFKALYNRIDMKQV EALVEASKEEVKAAAAPVTGPLADDPIQETITFDDFAKVDLRVALIENAEFVEGSDKLLR LTLDLGGEKRNVFSGIRSAYPDPQALIGRQTIMVANLAPRKMRFGISEGMVMAAGPGGKD IFLLSPDEGAKPGQQVK >gi|283548478|gb|GG730299.1| GENE 433 492406 - 493515 1255 369 aa, chain + ## HITS:1 COG:ECs2919 KEGG:ns NR:ns ## COG: ECs2919 COG0489 # Protein_GI_number: 15832173 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Escherichia coli O157:H7 # 1 369 11 379 379 701 95.0 0 MNAQSQAKSPEVLRAMVAGTLANFQHSTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWH SAFEALKEQCSADLLRITGAKAIDWKLSHNIATLKRVKNQPGINGVKNIIAVSSGKGGVG KSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIVSHGLAT NSIGYLVTDDNAMVWRGPMASKALLQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPV TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAQK LAEQYHTQLLGQMPLHISLREDLDRGTPTVISRPDSEFTAIYRELAGRVAAQLYWQGEVI PGEIAFRAV >gi|283548478|gb|GG730299.1| GENE 434 494343 - 494885 110 180 aa, chain + ## HITS:1 COG:STM2152 KEGG:ns NR:ns ## COG: STM2152 COG3539 # Protein_GI_number: 16765481 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 180 1 176 176 103 41.0 2e-22 MKRSIISAAVLSAVFMSAGAFAADTDSGILNINGKVTGTSCQFVDGATEATITLSSIPDS LFNEVNVGNDVTYGEGRASSPLEIKCTNSSNVKIFISANDVDNNDIIIPNIGLDTGVGFK LFHNNKSIAKSGSEGIPLSEFPSTEDGVYKLDLAARYAKRTVSVTPGDVNATVTLKVVQE >gi|283548478|gb|GG730299.1| GENE 435 494937 - 495620 287 227 aa, chain + ## HITS:1 COG:yehC KEGG:ns NR:ns ## COG: yehC COG3121 # Protein_GI_number: 16130048 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli K12 # 1 224 16 239 239 310 69.0 2e-84 MKGFYALIISSIIMPAHAGIVIYGTRVIYPADKKEVLVQLMNQGNRSSLVQSWIDDGDSS LPPEKIHVPFMLTPPVAKVAGNSGQQLKIKKMSNMLPNDKESLFYLNVLDIPPNNPGNEG KNILKFAMQNRIKLIFRPTGISPVNNYTFQKLSMKRSGSIYSIKNDAANWVTVTEVKANS IKINNESIMLAPFSSSDLALKSANANQYKITIIDDHGNYISDNVSLK >gi|283548478|gb|GG730299.1| GENE 436 495633 - 498113 2364 826 aa, chain + ## HITS:1 COG:ECs2915 KEGG:ns NR:ns ## COG: ECs2915 COG3188 # Protein_GI_number: 15832169 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 1 826 1 826 826 1390 82.0 0 MLRMTPIASAVLLLLLGIDAHAAEETFDTNFMMGGMKGEKVSDFRLDDNQPLPGQYDIDI YVNKQWRGKYDITVKDNPDDTCLSRDALTRLGINIQALDKQNECPTLKQAVQGGSYAWNI GTFSLDLSVPQAFVDELEQGYVPPENWDRGINAFYTSYYASQYYSDYKDSGNSKSTYARF TSGLNLLGWQLHSDASYNKTDDSSGEWKSNTLYLERGIPQILGTLRAGDMYTSSDIFDAV RFRGVRLYRDMQMLPNSKQNFTPLVQGIAQSNALVTIEQNGFVVYQKEVPPGPFSIADLQ LAGGGADLDVSIKEADGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASNQTDFAQ MSYQYGLNNLLTLYGGTMLADNYNAFTLGTGWNTRIGAISVDATQSHSKQDNGDVFDGQS YQIAYNKYLTQTATRFGLAAYRYSSRDYRTFNDHVWANNKDSYHRDENDVYDIADYYQND FGRKNSFSANVSQSLPQGWGSVSLSTLWRDYWGRSGSSKDYQVSYSNSWQRISYTFSASQ TYNEDHHEDKRFNVFISIPFDWGDDISTPRRHLYVSNSTTFDDDGFASNNTGLSGTAGSR DQFNYGVNLSHQRQNSETTAGGNLTWNAPVATLNGSYSQSSKYTQTGGSISGGLVAWSGG VNLANRLSETFAVMHAPGLEGAYVNGQKYRTTNRNGVVVYDGLTPYRENHLMLDVSNTNS ETDLQGNRRNTAPYRGAVVLAMFDTDQRKPWYIRAQRPDGSSLTFGYEVEDIHGHNIGVV GQGSQLFIRTNEVPPEINVAVDKQQGLSCSITFGKTIDESKVYICR >gi|283548478|gb|GG730299.1| GENE 437 498627 - 499157 33 176 aa, chain + ## HITS:1 COG:no KEGG:ECSE_2377 NR:ns ## KEGG: ECSE_2377 # Name: not_defined # Def: putative fimbrial protein # Organism: E.coli_SE11 # Pathway: not_defined # 8 176 177 344 344 82 39.0 7e-15 MWWYDLTNPGQVSFAKNVTISYVPPDSTCDIENDVNITLPDVSLSALPQSGMVSNIIGQG NIILNCINSLNGNSTRNASVFLSSVDLKNIGNDDILIDNNFDGIGFILSDQNDNKIKISS SQNTRAGATSLQDIQKGLPLRASYNIPIKARYYVYDKNKIHPGDFSALAKINIIYD >gi|283548478|gb|GG730299.1| GENE 438 499209 - 499535 400 108 aa, chain - ## HITS:1 COG:STM2148 KEGG:ns NR:ns ## COG: STM2148 COG5455 # Protein_GI_number: 16765477 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Salmonella typhimurium LT2 # 1 108 1 104 104 166 77.0 1e-41 MKKKMLLGALLLVTSTVWAAPTATAAAKGIDQYELKSFIADFTHFKPGDKVPPLYLTSEY TIKQWNLRNLPAPTAGTHWTYMGGAYVLVNDADAKIIKAYDGEIFYHR >gi|283548478|gb|GG730299.1| GENE 439 499907 - 500695 615 262 aa, chain + ## HITS:1 COG:STM2147 KEGG:ns NR:ns ## COG: STM2147 COG2145 # Protein_GI_number: 16765476 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Salmonella typhimurium LT2 # 1 259 1 259 265 349 77.0 3e-96 MQPDLHSRALAAHALHQFRTLSPLTHCMTNEVVQNFTANTLLALGASPAMVVEPEEASQF AAIASALLVNVGTLTRNRATAMRAAVEQAHLAKTPWTLDPVAVGALEFRRRFCLDLLALQ PAAVRGNASEILALAGMNGGGRGVDTTDTPAAALGAAQALARQVGTIVVVTGEVDYVTDG LRTVCVNGGDPLMTRVVGTGCALSAVVAASCALPGDRLDNVASACSWMKQAGHIATQQST GPGSFVPTFLDALYNLNAQEQA >gi|283548478|gb|GG730299.1| GENE 440 500692 - 501492 702 266 aa, chain + ## HITS:1 COG:ECs2906 KEGG:ns NR:ns ## COG: ECs2906 COG0351 # Protein_GI_number: 15832160 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Escherichia coli O157:H7 # 1 266 1 266 266 470 90.0 1e-132 MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFV AAQLDSVLSDVRIDTTKIGMLAEADIVEAVAERLHRHRVQNVVLDTVMLAKSGDPLLSPS AVETLRTRLLPQVSIITPNLPEAAALLGASHAQTEQEMLEQGRALRALGCEAVLMKGGHL EDAQSPDWLFTRDGEQRFTAPRVITKNTHGTGCTLSAALAALRPRHDNWADTVQEAKLWL SAALAQADTLEVGEGIGPVHHFHAWW >gi|283548478|gb|GG730299.1| GENE 441 501534 - 502280 679 248 aa, chain + ## HITS:1 COG:STM2145 KEGG:ns NR:ns ## COG: STM2145 COG2188 # Protein_GI_number: 16765474 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 248 1 248 248 461 93.0 1e-130 MEQAHTQLIAQLNERISAADNTPLYMKFAQTVKNAVRSGILEHGNILPGERDLSQLTGVS RITVRKAMQALEEEGVVTRARGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKR IVSCPEEVAQQLAVAVGSDVFLLKRIRYVDEDAVSIEESWVPAHLIHDVDAIGVSLYDYF RSQQIFPQRTRSRVSARMPDAEFQAHIQMDSKVPVLVIKQVALDQQQRPIEYSISYCRSD LYVFVCEE >gi|283548478|gb|GG730299.1| GENE 442 502254 - 503222 961 322 aa, chain - ## HITS:1 COG:ECs2903 KEGG:ns NR:ns ## COG: ECs2903 COG0524 # Protein_GI_number: 15832157 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 3 322 2 321 321 527 80.0 1e-149 MNNSTRLQQLIPQLRTQRPVTVVGAAVIDVIADAYALPWRGCDIELKQQGVNIGGCALNI AVALKRLGINASNALPLGQGVWADIIRNRMAKEGLHSLIDNAEGDNGWCLALVEPDGERT FMSFSGIENQWNADWLARLDIPRNGLVYLSGYQLASPCGELLVQWLEGLEDVTPFIDFGP RIGDISDALMARIMACRPLVSLNRQEAEIAAERFALSLDVEGFGAEWVRRFAAPVVVRHD KDGAWYFSAQTSGCVPAFTTTVVDTIGAGDSHAGGMLAGLTSGWPLADAVLLGNAVASWV VGHRGGDCAPSREALLLAHKNV >gi|283548478|gb|GG730299.1| GENE 443 503219 - 504223 934 334 aa, chain - ## HITS:1 COG:yegU KEGG:ns NR:ns ## COG: yegU COG1397 # Protein_GI_number: 16130037 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Escherichia coli K12 # 1 334 1 334 334 573 86.0 1e-163 MKAERILGALYGQALGDAMGMPSELWPRTRVKEHFGWIERFLPGPAENNAACYFNQAEFT DDTSMALCLADALLECDGKIVPDVIGRNILAWAERFDAFNKNVLGPTSKIALKAIRDGKP VAELENNGVTNGAAMRVSPLGCLLPAVNLDTFIDDVALASSPTHKSDLAIAGAVVVAWAV SRAIDGGKWTEIVDALPAIARHAQQKRITTFSASLSARLELALKIVRHADGIESASEQLY QVVGAGTSTIESVPCAIAMVELAQTDPNRCAVLCANLGGDTDTIGAMATAICGALHGVSA INPVLKQELDAVNQLDFTRYANGLMRLRERWEAL >gi|283548478|gb|GG730299.1| GENE 444 504220 - 505497 1480 425 aa, chain - ## HITS:1 COG:ECs2901 KEGG:ns NR:ns ## COG: ECs2901 COG0477 # Protein_GI_number: 15832155 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 425 1 425 425 738 95.0 0 MKTTVKLSFMMFVEWFIWGAWFVPLWLWLSKSGFTAGEIGWSYACTAIAAILSPILVGSI TDRFFSAQKVLAVLMFVGAILMYFAAQQTTFSGFFPLLLAYSLTYMPTIALTNSIAFANV PDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYSDISPTNIPLLITAGSSALLGVFAFF LPDTPPKSTGKMDFKVMLGLDALILLRDKNFLVFFFCSFLFAMPLAFYYIFANGYLTEVG MKNATGWMTLGQFSEIFFMLALPFFTTRFGIKKVLLLGLVTAAIRYGFFVYGGAEEYFTY ALLFLGILLHGVSYDFYYVTAYIYVDKKAPAHMRTAAQGLITLCCQGFGSLLGYRLGGVM MEKMFAYKEPVDGLTFNWAGMWGFGAIMIAVIAVLFMIFFRESDKEITAIKVDDRDVALK QGEVK >gi|283548478|gb|GG730299.1| GENE 445 505750 - 506802 1258 350 aa, chain + ## HITS:1 COG:ECs2900 KEGG:ns NR:ns ## COG: ECs2900 COG1830 # Protein_GI_number: 15832154 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli O157:H7 # 1 350 25 374 374 687 97.0 0 MTDIAQLLGKDADSLLQHRCMTIPSDQLYLPGHDYVDRVMVDNNRPPAVLRNMQTLYNTG RLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVS RRYAHRIPFLVKINHNETLSYPNTFDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIE EISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKM AENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQLANCYMGRAGLINSGGAAGGETDLS DAVRTAVINKRAGGMGLILGRKAFKKTMADGVKLINAVQDVYLDSKVTIA >gi|283548478|gb|GG730299.1| GENE 446 506821 - 507720 830 299 aa, chain - ## HITS:1 COG:STM2140 KEGG:ns NR:ns ## COG: STM2140 COG1597 # Protein_GI_number: 16765469 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Salmonella typhimurium LT2 # 1 299 1 299 299 532 88.0 1e-151 MIAFPASLLILNGKSADNLPLRETIAQLRDEGVEIHVRVTWEKGDAQRYVDEARRLGVAT VIAGGGDGTINEVSTALIQSQGGNIPALGILPLGTANDFATSAGIPEALDKALKLAIAGN ATEIDMVQVNDKTCFINMATGGFGTRITTETPEKLKAALGGVSYFIHGLMRMDTLKPDIC DIRGEDFHWQGKALVIGIGNGRQAGGGQQLCPTALINDGLLQLRIFTGEELLPGLLSALT QSEDNPNIIDGASSWFDIRAPHEITFNLDGEPLSGQEFHIEILPAALRCRLPPGCPLLR >gi|283548478|gb|GG730299.1| GENE 447 507851 - 508582 1048 243 aa, chain - ## HITS:1 COG:STM0887 KEGG:ns NR:ns ## COG: STM0887 COG0834 # Protein_GI_number: 16764248 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 1 243 1 243 243 452 94.0 1e-127 MKKLVLAALLATFAAGASAADKISFGVSATYPPFESLDASNKIVGFDIDLATALCKQMQA ECTFTNHAFDSLIPALKFKKYDAVISGMDITPERSKQVAFTQPYYANSALVIAKKDTYKT FADLKGKRIGMENGTTHQKYLQDKHPEVKTVAYDSYQNAIIDLKNGRIDGVFGDTAVVNE WLKTNPQLGAATDKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQQISDRW FPQ >gi|283548478|gb|GG730299.1| GENE 448 508851 - 509519 946 222 aa, chain - ## HITS:1 COG:ECs0944 KEGG:ns NR:ns ## COG: ECs0944 COG4160 # Protein_GI_number: 15830198 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine/histidine transport system, permease component # Organism: Escherichia coli O157:H7 # 1 222 1 222 222 358 95.0 6e-99 MLEYLPELLKGLHTSLTLTVASIVVALILALIFTIILTLKTPVLVWLVRAYITLFTGTPL LVQIFLIYYGPGQFPTLQEYPLLWHLLSEPWLCALIALSLNSAAYTTQLFYGAIRAIPEG QWQSCGALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMGYSQLL YGRTYDVMVFGAAGVIYLIVNGLLTLMMRLIERKALAFEHRN >gi|283548478|gb|GG730299.1| GENE 449 509519 - 510235 828 238 aa, chain - ## HITS:1 COG:artQ KEGG:ns NR:ns ## COG: artQ COG4215 # Protein_GI_number: 16128830 # Func_class: E Amino acid transport and metabolism # Function: ABC-type arginine transport system, permease component # Organism: Escherichia coli K12 # 1 237 1 237 238 414 96.0 1e-116 MNEFFPLASAAGMTVGLAVCALIIGLALAMFFAVWESVKWRPVAWAGSALVTILRGLPEI LVVLFIYFGSSQLLLTLADGFTINLGFVDIPVQMQIENFDVSPFLCGVIALSLLYAAYAS QTLRGALKAVPLGQWESGQALGLSKAAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVS LISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLVSQYILKRIDLRATRFERRPG >gi|283548478|gb|GG730299.1| GENE 450 510242 - 510973 1121 243 aa, chain - ## HITS:1 COG:STM0890 KEGG:ns NR:ns ## COG: STM0890 COG0834 # Protein_GI_number: 16764251 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 1 243 1 243 243 464 96.0 1e-131 MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESIDANNKIVGFDVDLANALCKEIDA TCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTS IDQLKGKKVGVQNGTTHQKFIMDKHPEVTTVPYDSYQNAKLDLQNGRIDGVFGDTAVVTE WLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNAALEKVKKDGTYETIYNKW FQK >gi|283548478|gb|GG730299.1| GENE 451 510990 - 511718 483 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 241 2 240 245 190 41 2e-46 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLS IAGNRFDFTKTPSDKAIRDLRQNVGMVFQQYNLWPHLTVVQNLIEAPCRVLGLTKEQAMA RAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI VSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEFGDASCFANPQTEAFKNYL SH >gi|283548478|gb|GG730299.1| GENE 452 512071 - 512586 517 171 aa, chain - ## HITS:1 COG:no KEGG:CKO_02238 NR:ns ## KEGG: CKO_02238 # Name: not_defined # Def: putative lipoprotein # Organism: C.koseri # Pathway: not_defined # 1 171 1 171 171 305 89.0 4e-82 MRYSKLSLLVPCALLLSACTTVTPVYKDNGSRSGACVEGGPDSVAQQFYDYRIQHRNNDI TALRPYLSDNLAKLLTDASRDNAHRDLFNSDPFSSRATLPDSASVASASTIPNSDARNIP LRVELKQGDQSWRDEVLMIREGQCWVVDDVRYLGGSVHAPAGTLRQSVENR >gi|283548478|gb|GG730299.1| GENE 453 512713 - 513036 529 107 aa, chain + ## HITS:1 COG:STM0930 KEGG:ns NR:ns ## COG: STM0930 COG0393 # Protein_GI_number: 16764292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 107 1 107 107 187 100.0 3e-48 MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREI AFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTAVKTRR >gi|283548478|gb|GG730299.1| GENE 454 513033 - 513863 845 276 aa, chain + ## HITS:1 COG:ECs0953 KEGG:ns NR:ns ## COG: ECs0953 COG3023 # Protein_GI_number: 15830207 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Escherichia coli O157:H7 # 1 275 1 275 276 489 87.0 1e-138 MKRLLWLLAFTLLLVGCAGEKGIVDKNGYQLDTRRQAQAAYPRIKVLVIHYTADDFDASL ATLTDKNVSSHYLIPAVPPLYHGKPRIWQLVPENDLAWHAGISFWRGATRINDTSIGIEL ENRGWQKSAGTKYFAPFEPAQIQALIPLAKDIIARYDIKPQNVVAHADVAPQRKDDPGPL FPWKELAAQGIGAWPDAQRVAFYLAGRAPHAPVETASLLDLLSRYGYEVKPDMTPREQQR VIMAFQMHFRPTLWNGVADAETQAIAEALLEKYGQG >gi|283548478|gb|GG730299.1| GENE 455 513860 - 514873 955 337 aa, chain - ## HITS:1 COG:ybjS KEGG:ns NR:ns ## COG: ybjS COG0451 # Protein_GI_number: 16128836 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 1 337 13 349 349 673 93.0 0 MKVLVTGATSGLGRNAVEFLCSKGVSVRATGRNEAMGKLLAKMGAEFVHADLTELVSSQA KVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFD YHHHRDIKEDFRPHRFANEFARSKAAGEDVIALLAQANPQTRFTVLRPQSLFGPHDKVFI PRLAHMMYHYGSILLPHGGSALVDMTYYENAVHAMWLVSQEACDNLPSGRAYNITNGEHR TLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGNKSAKEPKLTHYGVSKLNFDFT LDTTRAQEELGYQPIVTLDEGIERTAAWLRDHGKLPR >gi|283548478|gb|GG730299.1| GENE 456 514971 - 516407 1148 478 aa, chain - ## HITS:1 COG:STM0933 KEGG:ns NR:ns ## COG: STM0933 COG0702 # Protein_GI_number: 16764295 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Salmonella typhimurium LT2 # 5 478 3 476 477 833 86.0 0 MGVPQRILVLGASGYIGQHLVQALSQQGHQVLAAARRIERLEKQQLANVSCHKVDLARPE NLTPLLTAVDTVYYLVHGMGEGGDFIAHERQVAMNVRDALRNTPVKQLIFLSSLQAPRHE QSDHLRARQITADTLRESGVPMTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSR TTPIALENLMYYLVALLDHPTSHHRVLEAAGPQVLSYQEQFEHFMAVSGKHRLLIPIPFP TRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDAELRALIPQKLIAFDDAVRSTLKEE EKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFSVDTSASLKALWQVVNRLGGKEGYFFGN FLWKTRAALDLLVGHKLAKGRPENPVLQVGDAVDSWKVIIVEPEKQLTLLFGMKAPGLGR LSFTLEDRGDHRRIDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAKLAEQITD >gi|283548478|gb|GG730299.1| GENE 457 516412 - 517413 1074 333 aa, chain - ## HITS:1 COG:ybjU KEGG:ns NR:ns ## COG: ybjU COG2008 # Protein_GI_number: 16128838 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Escherichia coli K12 # 1 333 1 333 333 614 92.0 1e-176 MIDLRSDTVTRPSRAMLEEMMAAPVGDDVYGDDPTVNALQQYAAELSGKEAAIFLPTGTQ ANLVALLSHCQRGEEYIAGQGAHNYLYEAGGAAVLGSIQPQPIDAAQDGTLPLDKVAAKI KADDIHFARTRLLSLENTHNGKVLPREYLQAAWEFTRERNLALHVDGARIFNAVVAYGCE LKAIAQYCDSFTICLSKGLGTPVGSLLVGSHDYIKRAIRWRKMTGGGMRQAGILAAAGLY ALKNNVARLQEDHDNAAWMAEQLREAGADVMRHDTNMLFVRVGEEHAAALGEYMKAQGVL INASPIVRLVMHLDVSRAQLAEVAAHWRAFLTR >gi|283548478|gb|GG730299.1| GENE 458 517450 - 519168 1477 572 aa, chain - ## HITS:1 COG:STM0935 KEGG:ns NR:ns ## COG: STM0935 COG0028 # Protein_GI_number: 16764297 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Salmonella typhimurium LT2 # 1 572 1 572 572 1111 95.0 0 MKQTVAAFIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIDWMPTRHEEVAAFAAGAE AQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQEL FRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPESASTHWYHAP LPVVTPAEEEIKKLAQLLRYSSNIALMCGSGCAGAHQELVEFAAKIKAPIVHALRGKEHV EYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRPFYPTDAKIIQIDINPASIGA HSKVDMALVGDIKSTLRALLPLVEEKTERKFLDKALEHYREARKGLDDLAKPSDKAIHPQ YLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQA TEPGRQVIAMCGDGGFSMLMGDFLSVVQMKLPVKIIVFNNSVLGFVAMEMKAGGYLTDGT ELHDTNFARIAEACGITGIRVEKSSEVDEALQRAMSIDGPVLVDVVVAKEELAIPPQIKL EQAKGFSLYMLRAIISGRGDEVIELAKTNWLR >gi|283548478|gb|GG730299.1| GENE 459 519321 - 519755 568 144 aa, chain + ## HITS:1 COG:no KEGG:EFER_1016 NR:ns ## KEGG: EFER_1016 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 144 1 144 144 194 82.0 1e-48 MVTKLLNAVNRTLAHEDFGKFLLRLAVGGLMLFHGLHKLFSGIEGISGMLIAKGFPGFIA YGVLLGEVVAPCLIILGILTRPAALGLAFTMVVAWLMVGMGETWSLDKTGAWAIESLMYF FIGALAVAFLGAGKYALGGKSAWQ >gi|283548478|gb|GG730299.1| GENE 460 519899 - 520108 148 69 aa, chain + ## HITS:1 COG:no KEGG:ECSP_1442 NR:ns ## KEGG: ECSP_1442 # Name: not_defined # Def: putative Gef-like protein encoded by prophage CP-933N # Organism: E.coli_O157_TW14359 # Pathway: not_defined # 1 69 1 69 70 86 71.0 3e-16 MPDTYRLASYPPKGKEMLAMKQQSRRFITLIIICITVVLVVLITRKDLCEVRLKAGQTEV AVFTAYESE >gi|283548478|gb|GG730299.1| GENE 461 520227 - 521195 878 322 aa, chain - ## HITS:1 COG:ybjV KEGG:ns NR:ns ## COG: ybjV COG1018 # Protein_GI_number: 16128840 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 322 1 322 322 604 89.0 1e-173 MTMPTHQCPWRMQVHHIHQETPDVWTISLLCHDYYPYRAGQYALVSVRNSADTLRAYTLS STPGVSEYITLTVRRIDDGAGSQWLTRDVKRGDYIWLSDAMGEFTCEDKAEDKFLMLAAG CGVTPIMSMRRWLAKYRPQADVQVIFNVRSPQDVIFADEWREYPVTLVAENNATHGFVSG RLTTELLKSVPDLTSRTVMTCGPAPYMELVEKEVKALGVTRFFKEQFFTPVAEAATSGLK FTKLQPAKEFYAPVGSTLLEALESNKVPVVAACRAGVCGCCKTRVVSGEYNVTSTMTLTV AEVAEGYVLACSCHPQSDLVLA >gi|283548478|gb|GG730299.1| GENE 462 521206 - 522858 2163 550 aa, chain - ## HITS:1 COG:STM0937 KEGG:ns NR:ns ## COG: STM0937 COG1151 # Protein_GI_number: 16764299 # Func_class: C Energy production and conversion # Function: 6Fe-6S prismane cluster-containing protein # Organism: Salmonella typhimurium LT2 # 1 550 1 550 550 1138 96.0 0 MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIASLQGLSAWAVKAREYGIIDH DVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIAMRDALKAQCLNIDANAAVDNPMADLRL VSDDLGDLQRQAAEFTPNKDKATIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIY AQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATE GKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQ QVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDNFAPVIAQAQQMA GFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFAT SVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVN DLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAVLNEKFGLRSVTTV EEDMKQLLSA >gi|283548478|gb|GG730299.1| GENE 463 523014 - 523913 665 299 aa, chain - ## HITS:1 COG:ybjE KEGG:ns NR:ns ## COG: ybjE COG2431 # Protein_GI_number: 16128842 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 299 17 315 315 427 87.0 1e-119 MFSGLLIILVPLIVGYLIPLRHMGALKLINRLLSWIVYLILFFMGISLAFLDNLASNLLA ILHYSAVSVAVILLCNIAALFWLERSLPWRHNHQQEKLPSRIAMAFESLQLCGVVVVGFL LGLTGLSFLQHATEASEYTLIFLLFLVGIQLRNSGMTLRQIVLNRRGMIVAVVVVASSML AGVINALILGLPVKTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLI PGMVGRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPLLMAFFSA >gi|283548478|gb|GG730299.1| GENE 464 524056 - 524751 726 231 aa, chain - ## HITS:1 COG:aqpZ KEGG:ns NR:ns ## COG: aqpZ COG0580 # Protein_GI_number: 16128843 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Escherichia coli K12 # 1 231 1 231 231 332 91.0 2e-91 MFRKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGLTVLTMAFAVGHISGG HFNPAVTFGLWAGGRFPAKDVIGYVIAQVVGGIVAAAALYLIASGKAGFDAAASGFASNG FGDHSPGGYSMLSAVVVEIILTAGFLLVIHGATDKHAPAGFAPIAIGLALTLIHLISIPV TNTSVNPARSTAVAIFQGGWALQQLWFFWVMPIIGGVLGGLIYRTLLEKRD >gi|283548478|gb|GG730299.1| GENE 465 525122 - 526780 1341 552 aa, chain + ## HITS:1 COG:ybjD KEGG:ns NR:ns ## COG: ybjD COG3593 # Protein_GI_number: 16128844 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Escherichia coli K12 # 1 552 1 552 552 993 90.0 0 MILERVEIVGFRGINRLSLMLEQSNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDF WFPPGDIQGREHHLHIILTFRESQPGRHRVRRYRPLEACWTPCDDSYHRIFYRLEGECAD DGSVLTLRSFLDGDGHPLALDDINDLARHLVRLMPVLRLRDARFMRRIRNGTVPDSADVE VTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQSRYRLMRRRSNNE QRSWRYLDIINRMIDKPGGRTHRVILLGLFSTLLQAKGTLRLDKDARPLLLIEDPETRLH PIMLSVAWHLLNLLPLQRVATTNSGELLSLTPVEHVVRLVRESARVAAWRLGPGGISAED GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK PLVKFARRMGIEWHVLVDGDEAGKKYASTVRGLLNNDKEEERDHLTMLPALDMEHFMYRQ GFADVFHRVAQIPENVPMNMRKIITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLRKMF SRVLWLARGRAD >gi|283548478|gb|GG730299.1| GENE 466 526777 - 527724 552 315 aa, chain - ## HITS:1 COG:ybjX KEGG:ns NR:ns ## COG: ybjX COG2990 # Protein_GI_number: 16128845 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 314 15 329 330 363 56.0 1e-100 MSQLTESTFLSTKPITSVGLFYSLSRGQLRPAHCWDKRSFRRKFIWRSLLIPRLTQEWMT ELAQWPDLETLLARQPRLPVRLHRPYLAANFNRKMRLDAVRFHYHVIRHAFLPAELNALL SNDGLQLAQIEGKDNEIFTVTMMMFPVLDKEGESTILVRNGDGDELTKMTFTFCEYNGKS TLFIGGMQGNSQLPHEATQKATKSCHGIFPKRIVMEAICRLAEQLNIEKVMAVSNEQHIF HSPRYNGKNKVILSDYNAFWESLGGECDSCGYYHIPRALPRKNIEDIASKKRAEYRRRYQ LLDSIHAQLSSMFRH >gi|283548478|gb|GG730299.1| GENE 467 527855 - 529000 1446 381 aa, chain + ## HITS:1 COG:ECs0964 KEGG:ns NR:ns ## COG: ECs0964 COG0845 # Protein_GI_number: 15830218 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 10 381 9 380 380 588 88.0 1e-168 MDVLGEIGTFMKLKGKIKKRYFIFAIILIVAIIALWRTLNAPLPQYQTLIVRPGDLQQSV LATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAQNQIKEVEATLME LRAQRLQAEAEWKLARVTLSRQQQLAKTQAVSRQDLDTAATEMAVKQAQIGTIDAQIKRN QASLDTAKTNLDYTRIVAPMAGEATQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVS EADVIHLHPGQKAWFTVLGDPQIRYEGTLKDVLPTPEKVNDAIFYYARFEVPNPKGILRL DMTAQVHIQLTDVKNVLTIPLSALGDPVGNNRYNVRLLRNGETREREVVIGARNDTDVEI VKGLEEGDEVITGEGNVGAAK >gi|283548478|gb|GG730299.1| GENE 468 528997 - 530943 364 648 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788031|ref|ZP_02182477.1| 50S ribosomal protein L9 [Flavobacteriales bacterium ALC-1] # 255 648 6 413 413 144 27 1e-32 MTALLELSNIRRSYPSGEGQVEVLKDVSLSIQAGEMVAIVGASGSGKSTLMNILGCLDKP TSGTYRVAGRDVSTLDSDALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGTERKQ RLARAQELLQRLGLGDRVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPPHKPSTGRDISEPT VKTVSGWSQFISGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLV LADIRAIGTNTIDIYPGKDFGDDDPQYQQALKYDDLTALQKQPWVSSVTPAVSKNLRLRY GNIDVAASANGVSGDYFNVYGMTFSEGTTFNAEQLAGRAQVVVLDSNTRRQLFPTKAKVV GEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTMSGRIMGQSWLNSITVRVKDGF DSAQAEQQLTRLLSLRHGKKDFFTWNMDGVLKTAEKTTRTLQLFLTLVAVISLVVGGIGV MNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMLIAFTLQL FLPGWEIGFSPVALLTAFLCSTATGILFGWLPARNAARLDPVDALARE >gi|283548478|gb|GG730299.1| GENE 469 531018 - 531242 240 74 aa, chain - ## HITS:1 COG:STM0943 KEGG:ns NR:ns ## COG: STM0943 COG1278 # Protein_GI_number: 16764305 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Salmonella typhimurium LT2 # 1 74 1 73 73 139 97.0 1e-33 METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH ASVIVPVIEAEAVA >gi|283548478|gb|GG730299.1| GENE 470 531566 - 531886 346 106 aa, chain + ## HITS:1 COG:ECs0967 KEGG:ns NR:ns ## COG: ECs0967 COG2127 # Protein_GI_number: 15830221 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 106 1 106 106 201 95.0 2e-52 MSKTNDWLDFDLLAEDKLRDALKPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERATQ LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA >gi|283548478|gb|GG730299.1| GENE 471 531917 - 534193 1349 758 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 10 736 14 803 815 524 38 1e-147 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEA FIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQA AYLLRKHEVSRLDVVNFISHGTRKDEPGQSSDSGNQPNTEEQAGGEDRMENFTTNLNQLA RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM ADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIING LKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLLPVSKRKKT VNVADIESVVARIARIPEKSVSQSDRDTLKNLGNRLKMLVFGQDKAIEALTEAIKMSRAG LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGY VGYDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVV LVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSTEVIHQ VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMTRVVQDNLKKPLANEL LFGSLVDGGQVTVELDKEKNELTYGFQSAQKHKPEAAH >gi|283548478|gb|GG730299.1| GENE 472 534270 - 534599 219 109 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_3066 NR:ns ## KEGG: Rahaq_3066 # Name: not_defined # Def: hypothetical protein # Organism: Rahnella_Y9602 # Pathway: not_defined # 1 109 1 109 109 178 76.0 8e-44 MKLDNIPFHVTDWSQVIPEQHPGESGYATWKVAFAGDVRVRIVEYSPGYLADHWCSKGHV LFCLEGELRTELEDGRAFDLKPGMSYQVADHAEAHRSSTATGAKLFIVD >gi|283548478|gb|GG730299.1| GENE 473 534830 - 535021 65 63 aa, chain - ## HITS:1 COG:no KEGG:ECB_02012 NR:ns ## KEGG: ECB_02012 # Name: not_defined # Def: integrase # Organism: E.coli_B_REL606 # Pathway: not_defined # 5 50 239 284 337 89 80.0 4e-17 MIAGKGYLFPDASYPKFRRTMKDVKPDLPDGQATHALRHSFATHFMITAGVSSPCREYWG IHG >gi|283548478|gb|GG730299.1| GENE 474 534982 - 535776 215 264 aa, chain + ## HITS:1 COG:no KEGG:SNSL254_A4357 NR:ns ## KEGG: SNSL254_A4357 # Name: not_defined # Def: replication gene A protein (EC:3.1.-.-) # Organism: S.enterica_Newport # Pathway: not_defined # 21 245 331 603 707 353 67.0 4e-96 MRHQGTDNPYPQSLQLLPQRNDLQVYGMRVAEPHHNGTPHWHMMLFCKPEQRKHITEIMR RYALKEDGDEKGAAAVTAWASTWRIPQFKSIGLPTMGAYRELRKLPRGVSIADEFDERVE ATRAAADEGEFDLYIAAQGGANVPRDSQTVRVARNVTDEVNAYEEDIERVVGIYVPHLGS ELIHVTRTAEWRIVPKLLAVEPLTLKSGIAAPRSPVNNCGLGGLNNEIKVTPAAPEHSTT VLNLLCCGDFSRSDNDMKVGLSMF >gi|283548478|gb|GG730299.1| GENE 475 536051 - 538132 335 693 aa, chain - ## HITS:1 COG:no KEGG:Acid345_3761 NR:ns ## KEGG: Acid345_3761 # Name: not_defined # Def: hypothetical protein # Organism: A.bacterium # Pathway: not_defined # 3 538 6 556 556 343 37.0 1e-92 MKEAELRDLLCENLSVLEEGLVLLKKEQYIPNHLGTRSFIDIYAKDKHNHHVLIEVKRSN EAAREAINEVIKYVEGVKIHLGARDDEIRVIIASTKWDELLVPYSRFVNETNISIIGLHL YIDEKKITSEKISILNFNKGRFIAPWYDVYWYKNQNSLYHGIDTIKKDLISKNALDFIIT IFKATTPIPSPSKERRIKIIQSFHGAIKNVPQELFDYIVIVSIQARTTKEYISMIQSKDH TPEELDDIFSFAEDMDEDERLAYLHENAMESHNIDYDDFEIGYPAKILSIMNNHNIQKEK IIRNGHFSRNKLLTDEIILSEVCGYSGNSDQLLMRNIETNNKAHLSSLKDDIETVLALNP VWKGHLVKIINEIEKNHPSHIVEFKLSFPCSGIFSLYYFLKNEDYNHLPSYFLTVKEKDG VILKEYFGFLQDNGIRKNFKEIIDTYYSGDLQKLLFTVTWGGRDERDIDILEDSGLSYRS FCFNGTEKEVLYTLRDERWKTVKSADLSLASYINNNESLIAEMISEISFFDQGDVFSAPE IDTHIIIERSEVEKKDISKLLVFFDLAISSKSAMRYFQGKIDLSFNGYDHDPELYEIKEI RDYAQIINQQIPHLFFFLNPKGVCGIIKILYLCFCEVTSIQNNLHGKSYININPNNIDIL LNQQNLGIEQLAELCGASPELIKKSIDETLPRK >gi|283548478|gb|GG730299.1| GENE 476 538535 - 538939 388 134 aa, chain - ## HITS:1 COG:STM2723 KEGG:ns NR:ns ## COG: STM2723 COG5518 # Protein_GI_number: 16766036 # Func_class: R General function prediction only # Function: Bacteriophage capsid portal protein # Organism: Salmonella typhimurium LT2 # 1 132 213 344 346 185 65.0 2e-47 MYVTDAAQSSTDVESLRSAMRDSKGLGNFNNLFFYAPNGKPDGIKIVPLSEVATKDDFFN IKKVSAADLLDAHRVPFQLMGGKPENIGSMGDVEKVARVFVRNELTPLQERFKEINDWLG MEVIRFKYYSLESE >gi|283548478|gb|GG730299.1| GENE 477 539002 - 539328 77 108 aa, chain - ## HITS:1 COG:STM2723 KEGG:ns NR:ns ## COG: STM2723 COG5518 # Protein_GI_number: 16766036 # Func_class: R General function prediction only # Function: Bacteriophage capsid portal protein # Organism: Salmonella typhimurium LT2 # 1 106 80 187 346 134 58.0 3e-32 MKRNILTSTYIPHPLLSRQDFSRFVLDFLVFGNAFLEARKSVTDKIIRLDTSPAKYTRRG VEEDSYWYIQNFTKPHQFAPRSVFHLLEPDINQELYGMPTSAHSIPPG >gi|283548478|gb|GG730299.1| GENE 478 539548 - 539802 325 84 aa, chain - ## HITS:1 COG:no KEGG:Ent638_3501 NR:ns ## KEGG: Ent638_3501 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 83 506 588 589 160 95.0 1e-38 MVLKAKDTIRHGCLKYDAGATDITQSFMAIRKTMTSSGRSSTYEASRSEEASHADIAWAT MHALLNEPLSAGSGMHSTSILDIN >gi|283548478|gb|GG730299.1| GENE 479 539836 - 540156 336 106 aa, chain - ## HITS:1 COG:RSc1939 KEGG:ns NR:ns ## COG: RSc1939 COG5484 # Protein_GI_number: 17546658 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 1 106 392 498 506 133 58.0 6e-32 MVDAMEEWEDFEPFSDRPFNWRPAWIGYDPSHTGDSAGCAVLAPPLVAGGKFRILERHQW RGMDFATQAEAIRELTEKYCVEYIGIDATDIGQGVYQLVRSFFPAA >gi|283548478|gb|GG730299.1| GENE 480 540828 - 541238 103 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283832499|ref|ZP_06352240.1| ## NR: gi|283832499|ref|ZP_06352240.1| hypothetical protein CIT292_06441 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_06441 [Citrobacter youngae ATCC 29220] # 1 136 66 201 201 277 100.0 2e-73 MQDIERQNHFSTGSKSECFRLNPIEMSELVECFIEQRYPSSVYYDNLTNSLSRFQCIDSV YRLFVPNLVPTLDLSGWDTQPQATPPSSLNLTSDRYFSGNQVETVIDLGDGMFLDLESGM EFYRDDDGNVEWKEWK >gi|283548478|gb|GG730299.1| GENE 481 541909 - 543270 1628 453 aa, chain - ## HITS:1 COG:STM2136 KEGG:ns NR:ns ## COG: STM2136 COG0826 # Protein_GI_number: 16765465 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Salmonella typhimurium LT2 # 1 453 1 453 453 892 95.0 0 MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLQLGINEAHELGK KFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIMLVRENFPDMDIHLSVQAN AVNWATVKFWKQMGLTRVILSRELSLEEIEEIRTQVPDMEIEIFVHGALCMAYSGRCLLS GYINKRDPNQGTCTNACRWEYNVQEGKEDVVGNIVHKYEPIPVQNVEPTLGIGAPTDKVF MIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVERLTQMGVHSLKIEGRTKSYYYCAR TAQVYRKAIDDAAAGKPFDPQLLETLEGLAHRGYTEGFLRRHTHDDYQNYEYGFSVSERQ QFVGEFTGERKGELAAVLVKNKFTVGDSLELMTPQGNINFTLEQMENAKGEAMPVAPGDG YTVWMPVPEDIDLNYALLMRNFAGESTRNPHAK >gi|283548478|gb|GG730299.1| GENE 482 543391 - 544122 718 243 aa, chain - ## HITS:1 COG:no KEGG:ROD_22121 NR:ns ## KEGG: ROD_22121 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 19 242 12 234 236 318 65.0 1e-85 MVQDKRIPNAKLLLCPVLLVCFAANAEITEQQIDADCAKIPTYASQGEKFYKAKNYAKAR DAFVQQVAWSESCALDDSAIATAYNNVALTWMREGQWRKAKAWLMINPNDAKSVYNLGLI KDKLAALPKNDSAAGEYWKYAGLANWKTLNVKSTKNKSDYQVDFQGYYFGMMALYYGPNT GEFSEIVALKNNKGVIALREDEYTHCNISLTVNPDGINASTDDPQNCGFGAHVSADGYYL RVD >gi|283548478|gb|GG730299.1| GENE 483 544200 - 544922 754 240 aa, chain - ## HITS:1 COG:baeR KEGG:ns NR:ns ## COG: baeR COG0745 # Protein_GI_number: 16130019 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 240 1 240 240 453 96.0 1e-127 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDLVLPYVRQTPPDLILL DLMLPGTDGLTLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR VKTILRRCKPQRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIM >gi|283548478|gb|GG730299.1| GENE 484 544919 - 546322 1222 467 aa, chain - ## HITS:1 COG:STM2130 KEGG:ns NR:ns ## COG: STM2130 COG0642 # Protein_GI_number: 16765460 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 467 1 467 467 823 88.0 0 MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQRLQMLSDALSE QYEQHGNWRFLRNNDRFVFQILRSFEHDNDDDKPGPGMPPHGWRTQFWVVDQDARVLVGP RGPVPHDGMRHPIRVNGSEVGAVIASPVERLTRSTDINFDMQQRRSSWLIVALSTILAAL ATFTLARSLLAPVKRLVEGTHKLAAGDFTTRVAPTSTDELGKLAQDFNQLASTLEKNQQM RRDFMADISHELRTPLAVLRGELEAIQDGVRQFTPDSVASLQAEVATLTKLVDDLHQLSM SDEGALAYQKTSLDLIPLLEVASGAFRERFASRGLTIQLSLPDSMTVFGDRDRLMQLFNN LLENSLRYTDSGGRLHISAEQRERMVLLTFADSAPGVSDDQLQKLFERFYRTEVSRNRAS GGSGLGLAICVNIVQAHNGLIRAAHSPFGGVSITVELPLERDLQRDV >gi|283548478|gb|GG730299.1| GENE 485 546319 - 547728 1689 469 aa, chain - ## HITS:1 COG:ECs2885 KEGG:ns NR:ns ## COG: ECs2885 COG0477 # Protein_GI_number: 15832139 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 467 1 469 471 686 88.0 0 MTELPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAASLGESPLHMHMVIVSYVLTVAV MLPASGWLADKVGVRNIFFTAIVLFTLGSLFCAWSGTLNELVMARVLQGAGGAMMVPVGR LTVMKIVPREQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLLNIPVGIVGAIA TLMLMPNYTMQTRRFDLSGFAMLAVGMAALTLALDGSKGTGISSLALAALIICGVLAILL YLKHAHHNPRALFSLTLFRTPTFSLGLFGSFAGRVGSGMLPFMTPVFLQIGLGFSPFHAG LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLSLVSLLLMTTALLGWYYALPFVL FLQGMVNSTRFSSMNTLTLKDLPDDLASSGNSLLSMIMQLSMSIGVTIAGLLLGMFGQQH IDSGSTHTVFMYTWLCIAFIIALPAIIFARVPNDTQTNAVISRRKRSNG >gi|283548478|gb|GG730299.1| GENE 486 547725 - 550805 2914 1026 aa, chain - ## HITS:1 COG:ECs2884 KEGG:ns NR:ns ## COG: ECs2884 COG0841 # Protein_GI_number: 15832138 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli O157:H7 # 1 1025 1 1025 1025 1758 93.0 0 MKFFALFIHRPVATILISVAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMA SSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLP SGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAQTIAQIDGVGDVDVGGS SLPAVRVGLNPQALFNQGVSLDDVRSAIDNANVRKPQGAIETETHRWQVQTNDELKTAAE YQPLIIHYNNGAAVRLGDVASVSDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSI RAKLPELQTLVPAAIDLQIAQDRSPTIRASLEEVEQTLVISVALVILVVFVFLRSGRATL IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKP LQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLT LTPMMCGWMLKSSAPRAQTRKRGFGRVLVALQQGYGTSLKWVLRHTRLVGVVLLGTIALN IWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVNNVTGFTG GSRVNSGMMFITLKPRDERRESAQQVIDRLRVALAKEPGANLFLMAVQDIRVGGRQANAS YQYTLLSDDLAALREWEPKIRKALAALPQLADVNSDQQDNGAEMNLIYDRDTMSRLGIDV AAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDRRYTQDISALDKMFVINNDGKAIPLSY FAKWQPANAPLSVNHQGLSAASTISFNLPTGASLSEATEAINRTMTQLGVPSTVRGSFAG TAQVFQDTMNSQVILIIAAIATVYIVLGMLYESYVHPLTILSTLPSAGVGALLALELFNA PFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGKLPPEEAIFQACLLRFRPIMMTTLA ALFGALPLVLSAGDGSELRQPLGITIVGGLVVSQLLTLYTTPVVYLFFDRLRLRFSRKNS KPVAEL >gi|283548478|gb|GG730299.1| GENE 487 550806 - 553928 3262 1040 aa, chain - ## HITS:1 COG:yegN KEGG:ns NR:ns ## COG: yegN COG0841 # Protein_GI_number: 16130015 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1040 1 1040 1040 1710 92.0 0 MQVLPPGNSGGPSRLFILRPVATTLLMVAILLAGIIGYRFLPIAALPEVDYPTIQVVTLY PGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAA INAATNLLPDDLPNPPIYSKVNPADPPIMTLAVTSSAMPMTQVEDMVETRVAQKISQVSG VGLVTLSGGQRPAVRVKLNAQAIAALGLTSETIRTAITGANVNSAKGSLDGPARAVTLSA NDQMQSADEYRQLVIAYKNGAPVRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGA NIISTADNIRQMLPLLTESLPKSVKVSVLSDRTTNIRASVADTQFELMLAIALVVMIIYL FLRNIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENIS RYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAI LISAVVSLTLTPMMCARMLSQASLRKQNRFSRASERMFDRVIAGYGHWLAKVLNHPWLTL SVALGTLALSVMLWVFIPKGFFPIQDNGIIQGTLQAPQSSSFASMAQRQRQVSDVILNDP AVESLTAFVGVDGTNPALNSARLQINLKPLSARDDRVQKVIARLQDAVDRVPGVDLYLQP TQDLTIDTQVSRTQYQFTLQATSLDALSTWVPQLLEKLQQLPQLSDVSSDWQDKGLVAYV NVNRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHDTDTTPGLAALDTI RLTSSDGGVVPLSAIASIEQRFAPLSINHLDQFPVTTISFNVPDSHSLGDAVQAILDAEK ALNLPTNITTQFQGSTLAFQAALGNTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPT AGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMAPREAIFQA CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTPVIYL LFDRLSLYVKNRFPRQEEEA >gi|283548478|gb|GG730299.1| GENE 488 553928 - 555175 1273 415 aa, chain - ## HITS:1 COG:ECs2882 KEGG:ns NR:ns ## COG: ECs2882 COG0845 # Protein_GI_number: 15832136 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1 415 50 464 464 648 87.0 0 MKGRNKSRWVIAIVIVVAAIAAFWFWQSRSESQGTAPGATKPAQHSPGAGRRGMRSGPLA PVQAATAAEEAVPRYLTGLGTITAANTATVRSRVDGQLIALHFEEGQQVKTGDLLAEIDP SQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVNETLGTIK ADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSSDTTGIVVITQTHPIDLIFTL PENDIATVLRAQKSGNPLKVEAWDRTNSQKLSEGVLLSLDNQIDTTTGTIKVKARFNNQD DALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSDNKVSKNLVKPGIQDSQ KVVISAGLSAGDRVVTDGIDRLTEGAKVEVVEAHDASATDEKTAPRGYGKKGANS >gi|283548478|gb|GG730299.1| GENE 489 555614 - 556966 1307 450 aa, chain - ## HITS:1 COG:STM2125 KEGG:ns NR:ns ## COG: STM2125 COG0443 # Protein_GI_number: 16765455 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Salmonella typhimurium LT2 # 1 450 1 450 450 819 89.0 0 MFIGFDYGTANCSVAVMRDGQPHLLKMENNSTLLPSMLCAPTREAVSEWLYRHHDVPTTD DETQALLRRAMRYNREEDIEVNANSVQFGLASLGHYIDDPEEVYFVKSPKSFLGASGLKP QQVALFEDLVCAMMLHIRNQAQSQLPEAITQAVIGRPINFQGLGGDDANTQAQGILERAA KRAGFQDVVFQYEPVAAGLDYEATLLEEKRVLVVDIGGGTTDCSLLLMGPQWHQRADREN SLLGHSGCRVGGNDLDIALAFKHLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSDF YSSANGRLLNDLVRDAREADKVALLRKVWRERLSYRLVRSAEESKIALSDQTIVSAAIPF ISETLTTDISQHGLEAALNQPLARILEQVQLALENAQEKPDVIYLTGGSARSPLIKKALA QQLPGIPIAGGDDFGSVTAGLARWADVVFR >gi|283548478|gb|GG730299.1| GENE 490 556980 - 557972 784 330 aa, chain + ## HITS:1 COG:STM2124 KEGG:ns NR:ns ## COG: STM2124 COG0122 # Protein_GI_number: 16765454 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase # Organism: Salmonella typhimurium LT2 # 42 330 1 289 289 451 78.0 1e-127 MPVKKGRDFSEMLAPRQLEYESKAYRLNTVYAVGLLEKENGMFTLSWQPPYDWPWMLGFL AARAVEGVETVGHLSYARSLSVGKHCGLVRVVPDLHTSQLHVTLSQGLQPVASECLAKIT RLFDLTCCPQQIASALGSLGAARPGLRLPGCVDAFEQGVRAILGQLVSVSMAAKLTAKVA HTYGQTLEDAPEYVCFPTPEALADADPLHLKALGMPLKRAEALIHLARATLDGTLATSAP ADIEQGVKHLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFAGMTPAQIRRYAER WKPWRSYALLHIWYTDGWQSSVDGEITGIQ >gi|283548478|gb|GG730299.1| GENE 491 557940 - 561269 2887 1109 aa, chain - ## HITS:1 COG:Z3235m_2 KEGG:ns NR:ns ## COG: Z3235m_2 COG2202 # Protein_GI_number: 15804978 # Func_class: T Signal transduction mechanisms # Function: FOG: PAS/PAC domain # Organism: Escherichia coli O157:H7 EDL933 # 301 670 1 370 370 678 84.0 0 MSKQSQHVLVTLPHPLLRMASLGLVAFIFTLFSLELSRFGAQLAPLWFPTSIMMVAFYRH AGKMWPGIALACSFGNIGASLLFFPGQSLSFTYTAINIIEAVVGAMLLRKLLPWYNPLQN LNDWARLAFGSAVVPPLLGGVLLWLFLPKETSLNTFLIWVLSESIGALALVPLGLLFKPH YLLRHRDPRLLLETVITLLVTLTFSWLSMMYLPWPFTCVIVLLMWSAVRLPRMEAFLIFL STVMMVSLMLAADPSLLYTPRPNMMTSIPWLPFLMILLPANMMTMVMYAFRAERKHISES ESRFRNAMEYSAIGMALVGTEGQWLQANKALCQFLGYSQEELRSLTFQQLTWPEDLNNDL EQLDMLTRGEINSYSMEKRYYTRSGDVVWALLAVSLVRHSDNTPLYFIAQVEDINDLKHT EWINKRLMERITLANEAGGIGIWEWELQPDVISWDKRMFELYEVPAHIKPSWQVWYNCVV PEDREHAENVIRDSLAARAPFKLEFRIAVKDGVRHIRSLANRVLNKEGEVERFLGINMDM TEVKQLNEALYQEKERLHITLDSIGEAVICIDVEMNVTFMNPVAEKMSGWQQESAIGIPL LTVLRITFGDNGPLMENIYSADMSRTAIEQEVVLHCRNGNSYDIQYSITPLSTLDGGSIG SVLVIQDVTESRKMLRQLSYSASHDDLTQLANRVSFENHLKQLLHTVHETHQRHVLVFID LDRFKAVNDSAGHAAGDALLRELSSLMLSMLRSSDMLARLGGDEFGLLLPDCNIESARFI SGRIINAINDYHFMWEGHPHRIGASAGITLIDEKNHVASDVMSQADIACYAAKNSGRGRV CVYEPQQSEAHAARSQLSLDEQRHTITHNPMLIIARGVASPRIPETFSFWLLSLRLGTTE GGIIEEHAFRAGLVDPTLNQALDRRVFTEFFQSAAPAVANKGLSIALPLSAAGLLNTELV DQLLEQLQGSPLPPRLLHLTVPANVLKTNPTQATSTLHRLRQCGCRIILSHVGRDLELFD NLKYHMVDYLLLDSELSASAHGNLIDEMWVSIIQGHAQRLDIKTIAGPVQLPLIMDALSG IGIDMIYGDIIADAQPLDLLLNTSNFAIN >gi|283548478|gb|GG730299.1| GENE 492 561577 - 562218 696 213 aa, chain + ## HITS:1 COG:STM2122 KEGG:ns NR:ns ## COG: STM2122 COG0572 # Protein_GI_number: 16765452 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Salmonella typhimurium LT2 # 1 213 1 213 213 405 96.0 1e-113 MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEE RVKTNYDHPNAMDHSLLFQHLQTLKRGCAIELPVYSYVEHTRTQDTIHIEPKKVIILEGI LLLTDARLRDEMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFI EPSKQYADIIVPRGGKNRIAIDILKAKISQFFE >gi|283548478|gb|GG730299.1| GENE 493 562310 - 562891 649 193 aa, chain + ## HITS:1 COG:STM2121 KEGG:ns NR:ns ## COG: STM2121 COG0717 # Protein_GI_number: 16765451 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidine deaminase # Organism: Salmonella typhimurium LT2 # 1 193 1 193 193 374 96.0 1e-104 MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAYIDLSGPKDE VSAALDRVMSDEIVLKDGEAFFLHPGELALAVTFESVTLPSDLVGWLDGRSSLARLGLMV HVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRRQDAKYR DQQGAVASRIDKD >gi|283548478|gb|GG730299.1| GENE 494 562917 - 564770 1908 617 aa, chain + ## HITS:1 COG:STM2120 KEGG:ns NR:ns ## COG: STM2120 COG2982 # Protein_GI_number: 16765450 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Salmonella typhimurium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gi|283548478|gb|GG730299.1| GENE 495 564815 - 566416 1640 533 aa, chain - ## HITS:1 COG:STM2119_2 KEGG:ns NR:ns ## COG: STM2119_2 COG1253 # Protein_GI_number: 16765449 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Salmonella typhimurium LT2 # 238 527 1 290 295 528 92.0 1e-150 MGIAFTMEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPAQRDKARITGLLLA MVMRLLLLASISWLVTLTTPLFSIRGLSFSARDLIMLFGGFFLLFKATMELNERLEGKDS ENPTQRKGAKFWGVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVIIAISLMMLASKS LTRFVNSHPTIVILCLSFLLMIGFSLVAEGFGFHIPKGYLYAAIGFSVMIEALNQLAIFN RRRFLSANHTLRQRTAEAVMRLLSGQKEDAELDAETAAMLADHHEGQIFAPQERRMIERV LNLNQRTVSSIMTSRHDIEHVDLNAPEAEIRALLEKNQHTRLVVTGEDEQEELLGVVHVI DLLQQSLRGEALDLRALIRQPLVFPETLPLLPALEQFRNARTHFAFIADEFGSVEGIVTL SDVMETIAGNLPNEVEEIDARHDIQKNADGSWTANGHMPLEDLVQYVPIPLDDKREYHTI AGLLMEYLQRIPKTGEEVQVGDYRLKTLQVENHRVQKVQLIPLHAEEEMDYEV >gi|283548478|gb|GG730299.1| GENE 496 567120 - 568193 987 357 aa, chain + ## HITS:1 COG:STM2118 KEGG:ns NR:ns ## COG: STM2118 COG1596 # Protein_GI_number: 16765448 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Salmonella typhimurium LT2 # 1 357 23 379 379 679 94.0 0 MLPGSNMSSMGKDVIKQQDADFDIDRMVNVYPLTPRLVEQLRPRPNVAQPNMSLEQEIAG YQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVSVVGKTLA EIRSDITGRLAKYIADPQVDVNIAAFRSQKAYVSGQVNKSGQQAITNVPLTILDAINAAG GLTEAADWRNVVLTHKGQEQRISLQALMQNGDLSQNRLLYPGDILFVPRNDDLKVFVMGE VKKQSTLKMDFSGMTLTEALGNAEGIDLTTSNASGIFVIRPLKGESGHNGKIANIYQLDM SDATSLVMATSFRLQPYDVVYVTTAPVARWNRLINQLLPTISGVRYMTDTASDIHNW >gi|283548478|gb|GG730299.1| GENE 497 568199 - 568648 267 149 aa, chain + ## HITS:1 COG:STM2117 KEGG:ns NR:ns ## COG: STM2117 COG0394 # Protein_GI_number: 16765447 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Salmonella typhimurium LT2 # 1 148 1 148 149 269 87.0 1e-72 MFNKILVVCVGNICRSPTAERLLRKFHPALTVSSAGLGALVGKGADPCAISVAQAHSLSL ENHCARQISGRMCREYDLILTMEKRHISALCEMVPEMRGKVMLFGHWDNEREIPDPYRKS RDAFDAVYALLERSARQWAQALNAEQEKQ >gi|283548478|gb|GG730299.1| GENE 498 568645 - 570807 2334 720 aa, chain + ## HITS:1 COG:STM2116_1 KEGG:ns NR:ns ## COG: STM2116_1 COG3206 # Protein_GI_number: 16765446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Salmonella typhimurium LT2 # 1 480 1 479 479 813 88.0 0 MTEKVKQSAAPVTGNDEIDIGRLIGTVVEARWWVLGITATFALCAAIYTLFATPIYSADA LVQIEQNTGNSLVQDIGSALSNKPPASEAEIQLIQSRLVLGKTVDDLNLDIAVTKDTFPI FGAGWDRLMGLQNETVNVTTFTLPKGMNEQTFTLSVLNDKSYQLVSDGGFSARGQVGQLL NHDGVTMLVEAIHASPESQFTVSKFSTLGMINTLQNNLMVTETGKDTGVLSLTFTGEDRE QIRQILDSITRNYLQQNVERKSEEAAKSLAFLAKQLPEVRNRLDIAENKLNAFRQDKDSV DLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLFTKAHPAYRTLLEKRQALEDEKSKLNG RVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAIAQPGVL KPKKALIILGSIILGLMLSVVGVLLRSLFNRGIESPQALEEHGISVYASIPLSEWQKARD NVQTIKGVKRYKQSQLLAVGNPTDLAIEAVRSLRTSLHFAMMQARNNVLMLTGVSPSIGK TFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGKGDIASSAKPTS IANFDLIPRGQIPPNPSELLMSERFGELIAWASSHYDLVLIDTPPILAVTDAAIVGRHVG TTLMVARYAVNTLKEVETSLSRFEQNGIQVKGVILNSIFRRASGYQDYGYYEYEYTSDSK >gi|283548478|gb|GG730299.1| GENE 499 570885 - 571727 761 280 aa, chain + ## HITS:1 COG:STM2115 KEGG:ns NR:ns ## COG: STM2115 COG0463 # Protein_GI_number: 16765445 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Salmonella typhimurium LT2 # 1 280 1 280 280 514 90.0 1e-146 MTTENPLISIYMPTWNRQQLAIRAIKSVLRQDYPHWEMIIVDDCSSSYEQLQQFVEELND PRVSYTLNATNSGACAVRNQAIMQANGQYITGIDDDDEWTPNRLSVFLQHRHQLVTRAFL YANDYVCEGEVYSQPTSLPLYPKSVYSRRKFYKRNIIGNQVFTWAWRFKACLFDTTLKAA QDYDIFLRMVVAYGKPWKVKEATQILHVNHGEMRITSSPHKFSGYFQFYRKHKGKFDRAS KKYQLFTLYQIRNKRMNWRTLLTLLSIRNSKRLADGLRGR >gi|283548478|gb|GG730299.1| GENE 500 571730 - 572218 513 162 aa, chain + ## HITS:1 COG:ECs2863 KEGG:ns NR:ns ## COG: ECs2863 COG1045 # Protein_GI_number: 15832117 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1 162 1 162 162 280 83.0 6e-76 MLEDLRANGWSLRPCCMVVAYRIAHFCSVWRKKNILNNLWAVPVLVLYRLITECLFGYEI QAAASIGRRFTIHHGYGVVINKNVVAGDDLTLRHGVTIGNLGDKDLSCPVIGNGVELGAN VVLLGDVEIGDNVTIGAGSVVVDSVPDNALVVGEKARVKVIK >gi|283548478|gb|GG730299.1| GENE 501 572215 - 573432 1004 405 aa, chain + ## HITS:1 COG:wcaC KEGG:ns NR:ns ## COG: wcaC COG0438 # Protein_GI_number: 16129997 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli K12 # 1 405 1 405 405 720 81.0 0 MNILQFNVRLAEGGAAGVALDLHLRALEKGLSSRFVYGYGKGGKKSASHGNYPHVIKHTP RLTSAANIALFRFANRDLFGNLDNLYRTVTRTSGPLVLHFHVLHSYWLNLEEVVTFCQKV KAHKPDITFVWTLHDHWSVTGRCAFTDGCESWKTGCQKCPTLSNYPPVKIDKAHQQLPGK RQMFRDMLALGCQFISPSQHVADAFNSLYGVGRCRIINNGIDVATEAILAELPARHEPHG KPKIAVVAHDLRYDGKTNQRLVQKMMALGDNIELHTFGKFSPFAGDNVINHGFESDKRTL MSALNEMDGLLFSSRVDNYPLILCEALSIGVPVIATHSEAAQEVLAKAGGKTFSEVDVLR LVQLKKSDIAQAVFDTSLAAFSQRSRVAFSGQQMLEEYVSFYQNL >gi|283548478|gb|GG730299.1| GENE 502 573407 - 574624 864 405 aa, chain + ## HITS:1 COG:no KEGG:ECO111_2775 NR:ns ## KEGG: ECO111_2775 # Name: wcaD # Def: putative colanic acid biosynthesis protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 405 1 405 405 652 98.0 0 MSRSIRICSYLVLPLLYLLVNVKLAQLGESFPVTIVTFLPVLLLLFVERINIKKLMIALG VGGGLTAFNYLFGQSLDASKYVTSAMLFVYTVVIIGMVWSIRFKTISPHNYIKILRFFWL VVALVVGLAAVEMAQIILSGGSSLMEVISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFF ALALISIWLSIKQFGIKTPKSDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKDAIK KKLPLAIISFSVFLVGVIFAFPYIATRLGDLGTEGSSSYYRIVGPLVMVGYSLLNVDGVV RFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVILALWYMGKITKMMINAFGD NQNYRVQLYLFTPLSLFFTGSVFSPEYAFLIVCPFILRKALNIAR >gi|283548478|gb|GG730299.1| GENE 503 574630 - 575376 583 248 aa, chain + ## HITS:1 COG:ECs2860 KEGG:ns NR:ns ## COG: ECs2860 COG0463 # Protein_GI_number: 15832114 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 417 81.0 1e-117 MLLSIITVAFRNLEGIVKTHASLAHLAQAGDISFEWIVVDGGSSDGTSAFLEGLAGEHRL RFVSEPDNGIYDAMNKGIAMARGRFALFLNSGDILHADAAHFIRQLKTQSDKAMVIGDAL LDFGNGNKIKRRAKPGWYIYHSLPASHQAIFFPLSGLNVWRYDLQYKISSDYALAAQLYK SGYAFKKLNGLVSEFSMGGVSTTNNLELCRDAKKVQRQILHMPGFWTGLSEYLRLRTTGK TKTLYGKT >gi|283548478|gb|GG730299.1| GENE 504 575386 - 575940 398 184 aa, chain + ## HITS:1 COG:wcaF KEGG:ns NR:ns ## COG: wcaF COG0110 # Protein_GI_number: 16129994 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Escherichia coli K12 # 1 180 1 180 182 330 90.0 6e-91 MQDLSGFKVPGGFRGGGAIKVQLWWAVQATLFRWSPQVMYRWRVFLLRMFGAKIGKNVVI RPSVKITYPWKLTLGDYAWVGDDTVLYTLGNITIGAHAVISQKSYLCTGSHDYASQHFDI NATPIVVGDKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVTRERVE KVTP >gi|283548478|gb|GG730299.1| GENE 505 575965 - 577086 1336 373 aa, chain + ## HITS:1 COG:STM2109 KEGG:ns NR:ns ## COG: STM2109 COG1089 # Protein_GI_number: 16765439 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Salmonella typhimurium LT2 # 1 372 1 372 373 744 96.0 0 MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHSSNPKFHL HYGDLTDSSNLTRILKEVQPDEVYNLGAMSHVAVSFDSPEYTADVDAIGTLRLLEAIRFL GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYAC NGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVRMQWMM LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGEGVNEKGIVVSVTGHDAPGVKP GDVIIAVDPRYFRPAEVETLLGDPARAHEKLGWKPEITLRQMISEMVANDLEAAKKHSLL KSHGYEVAIALEY >gi|283548478|gb|GG730299.1| GENE 506 577089 - 578054 874 321 aa, chain + ## HITS:1 COG:ECs2857 KEGG:ns NR:ns ## COG: ECs2857 COG0451 # Protein_GI_number: 15832111 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 611 91.0 1e-175 MKRQRIFVAGHRGMVGSAIVRQLAQRDDVELVLRTRDELNLLDGDAVRQFFAAERIDQVY LAAAKVGGIVANNTYPADFIYENMMIESNIIHAAHLHNVNKLLFLGSSCIYPKHATQPIA ESELLQGQLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHV IPALLRRFHEACEQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAQEVWQEYTQPML SHINVGTGVDCTIRELAHTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEVS LEAGLASTWQWFLENQQRYRG >gi|283548478|gb|GG730299.1| GENE 507 578057 - 578536 473 159 aa, chain + ## HITS:1 COG:wcaH KEGG:ns NR:ns ## COG: wcaH COG0494 # Protein_GI_number: 16129991 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 159 2 160 160 261 77.0 4e-70 MFLRHEDFATVVRSTPLISIDLIVENAEGEFLLGKRLNRPAQGYWFVPGGRVQKNEPLHA AFERLTDAELGLRLPLTAAEFYGVWQHFYDDNFSGDDFSTHYIVLGFRLRVSENDLQLPD VQHDAYRWLAATEILASDSVHTNSRAYFCEASQSGVPGL >gi|283548478|gb|GG730299.1| GENE 508 578533 - 579759 884 408 aa, chain + ## HITS:1 COG:STM2106 KEGG:ns NR:ns ## COG: STM2106 COG0438 # Protein_GI_number: 16765436 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Salmonella typhimurium LT2 # 1 407 1 407 407 702 83.0 0 MRILVYGINYSPELTGIGKYTGEMVEWMAQQGHDVRVITAPPYYPQWKVNGRYSSWRYRC EQGDATVWRCPLYVPEQPSTLKRLLHLGSFALSSFFPLLAQRRWKPDRIIGVVPTLFCTP GMRLLAKLCGARTLLHIQDYEVDAMLGLGMAGNGKRGVVAKLASAFERSGLHNVDNISTI SRSMMHKAVEKGVAPDKVIFFPNWSEVARFRDVTDADALALRQKLGLPADKKIILYSGNI GEKQGLESVIDAAVELSEQPWLFAIVGQGGGKARLEAMVSERGLRNVMFFPLQPYEALPA LLKFAACHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEPETELGQLCDAHPGIAVCVE PESVNALVCGIQRALTMPKVNTVAREYAERTLDKENVLSQFIADIRGT >gi|283548478|gb|GG730299.1| GENE 509 579759 - 581195 1390 478 aa, chain + ## HITS:1 COG:ZcpsB_1 KEGG:ns NR:ns ## COG: ZcpsB_1 COG0836 # Protein_GI_number: 15802529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Escherichia coli O157:H7 EDL933 # 1 341 1 341 341 625 91.0 1e-179 MSQSKLFPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVIC NEQHRFIVAEQLRQLHKLTENIILEPAGRNTAPAIALAALAAKRQCPGDDPLLLVLAADH MIADEEAFREAVRNAMPYASAGKLVTFGIVPDQPETGYGYIRRGEVSPSNTDAVAFAVAQ FVEKPNLETAQAYVASGDYYWNSGMFLFRAGRYLEELKKYRPDILEACERAMSTVDPDLD FIRVDEQAFLACPEESVDYAVMERTADAVVMPMNAGWSDVGSWSSLWEISAHTAEGNVHH GDVISHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGR HEHHIHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT INDDIKLLAENESVYIPLGATHCLENPGKIPLDLIEVRSGSYLDEDDVVRFADRYGRA >gi|283548478|gb|GG730299.1| GENE 510 581322 - 582692 1462 456 aa, chain + ## HITS:1 COG:ECs2853 KEGG:ns NR:ns ## COG: ECs2853 COG1109 # Protein_GI_number: 15832107 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli O157:H7 # 1 456 1 456 456 875 90.0 0 MTKLTCFKAYDIRGRLGEELNEEIAWRIGRAYGEFLQPKTIVLGGDVRLTSETLKLALAK GLQDAGVDVLDIGMSGTEEIYFATFNLGVDGGIEVTASHNPLDYNGMKLVREGARPISGD TGLRDVQRLAEANDFPAVDETRRGRYQRINPRDAYIDHLLGYINPDNLKPMKLVLNSGNG AAGPVVDAIEARFKALGVPVELIKIHNTPDGNFPNGIPNPLLPECRADTRDAVIEHGADM GVAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAA GGKPVMSKTGHAFIKERMRHEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELLCLKGQ SLGELVRDRMAAYPASGEINSTLAEPAAAIARVEQHFSREALTVDRTDGISMSFVDWRFN LRSSNTEPVVRLNVESRGDIPLMEARTRTLLALLNQ >gi|283548478|gb|GG730299.1| GENE 511 582746 - 584140 1309 464 aa, chain + ## HITS:1 COG:STM2103 KEGG:ns NR:ns ## COG: STM2103 COG2148 # Protein_GI_number: 16765433 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Salmonella typhimurium LT2 # 1 464 1 464 464 867 92.0 0 MTHLKKRERAKTNASLISMVQRFSDITIMFGGLWVICELSGLPFLYMHLLVALITLVVFQ MLGGITDFYRSWRGVKISTELVLLLQNWTLSLIFSAGLIAFNNDFDNRLAVWLAWYLLSS VGLVLSRSFIRFGAGWLRNRGYNTRRVAVAGDLPAGQMLLDSFRHEPWLGFEVAGVYHDP IPGKNSRDWAGNLQQLVDDAKASRIHNVYIAMSMNDGASVKKLVRDLADTTCSVILIPDV FTFNILHSRIEEMNGVPVVPLYDTPLSGINRLLKRAEDIVLASLILLLISPVLCGIALLV KLTSKGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDAVVKQATQNDPRVTPVGNFLRRTS LDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGE TDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTIFKGFVNKAAY >gi|283548478|gb|GG730299.1| GENE 512 584142 - 585620 1674 492 aa, chain + ## HITS:1 COG:wzxC KEGG:ns NR:ns ## COG: wzxC COG2244 # Protein_GI_number: 16129986 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 1 492 1 492 492 776 89.0 0 MSLREKTLNGAKWSAIATAIIIGLGLIQMTVLARIIDNHQFGLLTVALVIIALADTLSDF GIANSIIQRKEIGYLELTTLYWLNVGLGIVVCVAMFLLSETIASVLHNPELAPLIKALSL AFVVIPHGQQFRALMQKELAFNKIGMIETSSVLAGFTFTVVSAHFWPLALTAILGYLVNS ALRTLLFGYFGRKIYRPGLHFSLASVSSNLRFGAWLTADSIINYINTNLSTLVLARTLGA GVAGGFNLAWNVAVVPPIKLNPIITRVLFPAFAKIQDDSEKLRVNFYKLLSVVGIINFPA LLGLMVVANNVVPLVFGEKWNGIVPILQLLCIVGLLRSVGNPIGSLLMAKARVDISFKFN VFKTFLFIPAIFIGGHLAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYMLSLWL PLYLSLPTVVVSYALGFTLRTQLPLSTLLGIQIAAGALAFVVMIVLSRHPLVVEIKRQLC RSEKMKTLLRAG >gi|283548478|gb|GG730299.1| GENE 513 585644 - 586924 1198 426 aa, chain + ## HITS:1 COG:ECs2850 KEGG:ns NR:ns ## COG: ECs2850 COG2327 # Protein_GI_number: 15832104 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 422 1 422 426 767 88.0 0 MKLLILGNHTCGNRGDSAILRGLLDAINAQRPGTEVDVMSRYPVSSSWLLNRPVMGDPLY LQMKQHNNAAGVMGRVKKVLRRRYQHQVLLSRVTDSGNLRNIAIAQGFTDFVRLLSRYDA IIQVGGSFFVDLYGVPQFEHALCSFMAKKPLYMIGHSVGPFQDEQFNQLANYVFGHCNAL ILRESVSLDLMKRSAITTEKVEAGVDTAWLVDNHYEDFEPGYAVQHWLQTVAKQKTVAIT LRELAPFDKRLGTTQQAYEQAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLR QYVNDPIRYHVVMDELNDLEMGKILGACDLTVGTRLHSAIISMNFMTPAIAINYEHKSAG IMQQLGLPEMAVDIRHLLDGSLESKVADTLGQLHELNIRVSDAVMRERERGARMVQSVLT RIEGDK >gi|283548478|gb|GG730299.1| GENE 514 586921 - 588141 1008 406 aa, chain + ## HITS:1 COG:STM2100 KEGG:ns NR:ns ## COG: STM2100 COG0438 # Protein_GI_number: 16765430 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Salmonella typhimurium LT2 # 1 406 1 406 406 658 78.0 0 MKIGFFLLKFPLSSETFVLNQITAFIDMGYDVEIVALHKGDLENTHAAFNTYQLGDKTRW LLNEPDGKLAKLKSRAAAALQGITRAATWKALNVSRYGDEARNLILAAICGGNPQAFQAD VFIAHFGPAGVTAAKLRELGAIRGKIATVFHGVDVSHRDVLARYTPEYQQLFQRGDLMLP ISNLWAGRLKKMGCPPQKIAVSRMGIDMTRFTPRQLKAPAAPLEIISVARLTEKKGLHVA IEACRQLKEQGVLFRYRILGIGPWERRLRTLIEQYQLDDVIEMPGFKPSHQVKEMLEQAD VFLLPSITGRDGDMEGIPVALMEAMAVGIPVISTVHSGIPELVESGKSGWLAPENDAQAL AERLAAFSLLDSEQVQPIVQCAREKIETEFNQLAINKQLASLLQTM >gi|283548478|gb|GG730299.1| GENE 515 588543 - 589547 581 334 aa, chain + ## HITS:1 COG:no KEGG:CKO_00743 NR:ns ## KEGG: CKO_00743 # Name: wcaM # Def: putative colanic acid biosynthesis protein # Organism: C.koseri # Pathway: not_defined # 1 334 134 467 467 602 87.0 1e-171 MSGFGPVTQIYIGGKTPRRMRNLTIDDIAVTRANYGILRQGFHNQIEGAKITNCRFSDLQ GDAIEWNVAINDSNILISDHVIERINCTNGNVNWGIGIGLAGSTYDNSYPEELAVKNFVV ANITGSDCRQLVHVENGKHFIIRNVTARNITPDFSKKAGIDNATVAIYGCDNFVIDNINM ENCAGMLIGYGVIKGRYLSIPQNFKLNNIHLDNSKQEYKLRGIQISSGNATSFVAITNVE MKRATLELHNQPQHLFLRNVKVMQHATTGPALKMHFDLRQDVRGKFMAKQNTLLSLANVH AVNETGQSSVDIDRVNHQVVNVEAVNFRLPGQGR >gi|283548478|gb|GG730299.1| GENE 516 589713 - 590606 914 297 aa, chain + ## HITS:1 COG:ECs2846 KEGG:ns NR:ns ## COG: ECs2846 COG1210 # Protein_GI_number: 15832100 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 297 1 297 297 557 94.0 1e-159 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQLLGLGHSILCARPI VGDNPFVVVLPDVVLDNASADPLRYNLAAMVARFNETGRSQVLAKRMDGDLSEYSVIQTK EPLDNEGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWGELEHTQPGAWGRIQLTD AIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVKYGLRNLKEGPKFRKGIEKLLSE >gi|283548478|gb|GG730299.1| GENE 517 590978 - 592060 680 360 aa, chain + ## HITS:1 COG:rfbB KEGG:ns NR:ns ## COG: rfbB COG1088 # Protein_GI_number: 16129981 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Escherichia coli K12 # 1 360 1 360 361 647 86.0 0 MKILVTGGAGFIGSAVVRHIIKNTQDTVVNVDKLTYAGNLESLAEVSENHRYYFEHADIC DKAAMERIFATYKPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARGYWNGLDA DKKQAFRFHHISTDEVYGDLPHPDEVAAGGVFPLFTEKTAYAPSSPYSASKASSDHLVRA WLRTYGFPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHA RALYTVVTKGVVGETYNIGGHNEKKNLDVVHTICDLLDEIVPKEGSYRDQLTYVADRPGH DRRYAIDAAKISNELGWKPQETFESGIRKTVEWYLSNTQWVENVKSGAYKTWIEQNYAAR >gi|283548478|gb|GG730299.1| GENE 518 592572 - 593204 4 210 aa, chain + ## HITS:1 COG:CAC2350 KEGG:ns NR:ns ## COG: CAC2350 COG0399 # Protein_GI_number: 15895617 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Clostridium acetobutylicum # 1 206 149 348 364 165 45.0 6e-41 MIYDAAHAFGVKNKGKSILSYGDASTISFHATKVFHTIEGGAIVFKTKAHFEEAKRLINF GIELDKGIQSVGINAKLNEYQAAAGLVLMDNIGEIIDKRVSLFELYRESLDDVIAMPKWL EGSTYNGAYMPIFCDSEEQLILLMEKLGACGIQTRRYFYPSLNNVIKANDTSCTSNSDDL ARRSLCLPLHYYMTKKDVLTVTENIKKVLK >gi|283548478|gb|GG730299.1| GENE 519 593536 - 593922 68 128 aa, chain + ## HITS:1 COG:no KEGG:ECL_01361 NR:ns ## KEGG: ECL_01361 # Name: not_defined # Def: WbqC-like family protein # Organism: E.cloacae # Pathway: not_defined # 4 110 110 216 232 97 46.0 1e-19 MYEDNNLFNYIKNSVVQLLNILNIDVELVTSSALNLSRDYKSQERVIRTCIALGADEYIN PPGGLELYTESEFVKNGLKLKFLEPVIEPYQQSVDSFISHLSIIDVMMWNGLEKTQQMAH KNAFIQNS >gi|283548478|gb|GG730299.1| GENE 520 594137 - 594358 132 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832539|ref|ZP_06352280.1| ## NR: gi|283832539|ref|ZP_06352280.1| ribosomal-protein-alanine acetyltransferase [Citrobacter youngae ATCC 29220] ribosomal-protein-alanine acetyltransferase [Citrobacter youngae ATCC 29220] # 1 73 25 97 97 134 100.0 2e-30 MVLTDHKFKGKGYARILLQHVLSDIGTYGHSEVRLEVHKDNKAAIGLYKSLGFSILQTHK DVYYIMTLVSHDK >gi|283548478|gb|GG730299.1| GENE 521 595338 - 595889 -170 183 aa, chain + ## HITS:1 COG:no KEGG:DP0039 NR:ns ## KEGG: DP0039 # Name: not_defined # Def: O-antigen transporter # Organism: D.psychrophila # Pathway: not_defined # 1 176 336 510 514 112 34.0 6e-24 MAANSELVLSVWTGNNVIATHSADVLTCYALGNLFFAIAAFPYYLQYAFGQIRLHVYGNI FFIIIIIPSLILSIKTFGAIGAGYVWLMQNAIFLILWSWFIHGRFIRSKRIAWLISDVLV TLIPTILIIIIFKIIYPSEEHGRMFSFFILASQSVIAFLSTILADARVRKIIKIKIIKRK YEI >gi|283548478|gb|GG730299.1| GENE 522 596497 - 597066 -4 189 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832541|ref|ZP_06352282.1| ## NR: gi|283832541|ref|ZP_06352282.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 189 207 395 395 331 100.0 2e-89 MEIKWFIRSNGMESANLFSTIHYSEALYQFFEYLVYRLQQLTNVIFLTDRVGYFSLLYQQ NEIVPYWGEILGLKNIYQASYPNALPLGQWLGGSIENTVVSWNSNPGLAGWIILLSNYSL ISAGLAILVVIVSLFFNIYFSSLIGGEVLKKFSYVFCILYLFPGWMGMYINLLFYFVIWL VICKFLRVK >gi|283548478|gb|GG730299.1| GENE 523 597067 - 597957 -8 296 aa, chain + ## HITS:1 COG:alr0557_1 KEGG:ns NR:ns ## COG: alr0557_1 COG0463 # Protein_GI_number: 17228053 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 1 212 1 214 270 97 27.0 3e-20 MKLSVCVSTYNQEKYIKECLDSIDMQEMEIPFEIIVGVDKSSDNTLRIVSNFAKTATNTV KIITSDTQVGASENYLRIHQIANGEYVCHIDGDDLMLQGKLQKQVSILDSNSNLSAVWHN MVLFSDSGDVLNPSYASVWDGEISLSDFLRVGFVSAHSSIMYRRDCRSTYKYDYPVPDYA IFLDLLAHGNGYVINQSLGQYRHNVVSGVISTGFNSFKGNLYRSLYDFVLTADGSSYRKK DIFCFSLLNLLSDIKSKRGVDRLLMLILKKNISLVNPFILIDSYKKMMLASVKKKG >gi|283548478|gb|GG730299.1| GENE 524 598091 - 598612 152 173 aa, chain + ## HITS:1 COG:no KEGG:Bacsa_0065 NR:ns ## KEGG: Bacsa_0065 # Name: not_defined # Def: putative WbuN protein # Organism: B.salanitronis # Pathway: not_defined # 2 171 48 218 220 63 28.0 3e-09 MLLNSVLFKLFKVDIYRRLCIYKLLSGKKLSEIKSESELFYENVLCAKKIIETHAIIKKL SEDFQFILCSASIDPVVEVIADKMGCEQFFSTRLIAKDGIYTGQIFVDLLGRKGKHLKEA DVSYNLVITDNKSDIDLIETCGKAIIISEEKNINFWNDFKLKNKTMDIKVVIV >gi|283548478|gb|GG730299.1| GENE 525 598705 - 599379 -114 224 aa, chain + ## HITS:1 COG:no KEGG:Tresu_1325 NR:ns ## KEGG: Tresu_1325 # Name: not_defined # Def: hypothetical protein # Organism: T.succinifaciens # Pathway: not_defined # 15 216 214 415 434 66 29.0 7e-10 MFVIGCNIVTISNVIYIILAILFVYTFYEVGYIFNDAILIKKEKNPTLRLTDIELEYVYH NFSKIMIVRTVWAILILSLFYFSGFHYISASLGGIGILLIYYFYNTTRSNFSAILYYLLI SFRFCVPFMILYQHFPLLLLVMQPLLATLEYTGKKKLFNGMFTWFIAYKEYTRFIWYLII SSLIYVLPFPLGEDIRSSMLFVALMGLMFRSVILFKMVVKKCKA >gi|283548478|gb|GG730299.1| GENE 526 599923 - 600534 22 203 aa, chain + ## HITS:1 COG:NMB0218 KEGG:ns NR:ns ## COG: NMB0218 COG0438 # Protein_GI_number: 15676144 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Neisseria meningitidis MC58 # 1 197 177 374 376 172 44.0 3e-43 MVGGIGVNLETYRLKDLTYKNGPLTFTMVSRLLIDKGIREYVSAAEIVKREYPDTIFQVI GGMDDNLGGISYPEFEKWKSDNNVVFTGVISNVIDILKSSDVFVLPSYREGVPRSSQEAL AVGLPIITTDVPGCKETVVDGVNGFLVPPWDSESLSKKMIELIENKKLLIEMGKQSRLLA ENRFDEESFCDRVINILINRKCN >gi|283548478|gb|GG730299.1| GENE 527 601384 - 601644 149 86 aa, chain + ## HITS:1 COG:ECs4722 KEGG:ns NR:ns ## COG: ECs4722 COG1209 # Protein_GI_number: 15833976 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 84 203 286 293 121 67.0 3e-28 MYLEQGLLNVELLGRGFAWLDTGTHESLLDASMFVNTIEKRQGFKIACLEEIALRKGWVS PEQLADDANILGKTDYGRYILQLINK >gi|283548478|gb|GG730299.1| GENE 528 601801 - 603207 1840 468 aa, chain + ## HITS:1 COG:gnd KEGG:ns NR:ns ## COG: gnd COG0362 # Protein_GI_number: 16129970 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Escherichia coli K12 # 1 468 1 468 468 896 96.0 0 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVVAENPGKKLVPYYTVKEF VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF NFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGH YVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELATTFTEWNEGELSSYLIDITKDIFT KKDEDGKYLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAAS KVLSGPQAKLAGDKAEFVEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKIF RAGCIIRAQFLQKITDAYAENAGIANLLLAPYFKNIADEYQQALRDVVAYAVQNGIPVPT FAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD >gi|283548478|gb|GG730299.1| GENE 529 603404 - 604570 1140 388 aa, chain + ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 388 1 388 388 652 82.0 0 MKITISGTGYVGLSNGILIAQHHEVVALDIVPAKVEMLNQKKSPIVDKEIEEYLATKPLN FRATTDKYDAYRDADYVIIATPTDYDPKTNYFNTSSVESVIRDVIAINPNAIMVIKSTIP VGFTHSIKEQFGIDNIFFSPEFLREGRALYDNLHPSRIVIGERSERAERFAVLLQEGAIK KDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESLGLSSRQIIEGVCLDPRIGN HYNNPSFGYGGYCLPKDTKQLLANYASVPNNIIGAIVDANRTRKDFIADSILARKPKVVG VYRLIMKSGSDNFRASSIQGIMKRIKAKGVPVIIYEPVMEEDEFFHSRVVRDLNAFKNEA DVIISNRMTAELADVEEKVYTRDLFGSD >gi|283548478|gb|GG730299.1| GENE 530 604630 - 605634 748 334 aa, chain - ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 334 1 335 343 437 62.0 1e-122 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLGLLVHPGFHFHKID LADRESMSALFASGHFDRVIHLAAQAGVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPTTGLRFFT VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPQADSQ WTVETGTPAASIAPWRVYNIGNSSPVELMDYIKALEEALGIDATKNMLPLQPGDVLETSA DTKALYDVIGFKPETTVRDGVRNFVDWYRDFYKV >gi|283548478|gb|GG730299.1| GENE 531 606053 - 607012 1022 319 aa, chain + ## HITS:1 COG:ECs2828 KEGG:ns NR:ns ## COG: ECs2828 COG3765 # Protein_GI_number: 15832082 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Escherichia coli O157:H7 # 1 318 20 337 337 431 73.0 1e-120 MSGHGNDPEQIDLIDLLVQLWRGKVTIVIAIVVALVLAVGYLAVAKEKWTSTAIITQPDV GQIATYNNALNVLYGANAPKVTELQVNVIGRFSTSFSALAEMLDNQEEPQKLSIEQSVKG QQLPLAVSYVASTPEEAQRQLAEYIQQTDEKVAKELEGDLADNIKLQTTTLQDSLKTQEV VAQEQKDLRIKQIQEALRYAEQAGVTKPQIQQTQDVTQDSMLLLGSDALKSMIEHESTRP LILSENYFQTKQKLLDIDNLKLEGSELHAYRYVMKPTLPIRRDSPKKAITLVLAVLLGGM IGAGVVLGRNALRGYKARA >gi|283548478|gb|GG730299.1| GENE 532 607081 - 607692 733 203 aa, chain - ## HITS:1 COG:ZhisI_1 KEGG:ns NR:ns ## COG: ZhisI_1 COG0139 # Protein_GI_number: 15802505 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Escherichia coli O157:H7 EDL933 # 1 112 1 112 112 228 92.0 6e-60 MLTKQQCRELDWEKTDGLMPVVVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQR LWTKGETSGHYLNVVNIAPDCDNDTLLVLANPIGPTCHKGTSSCFGDASHQWLFLYQLEQ LLAERKTADPASSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLMYHL LVLLQDQELDLTTVIENLRKRHQ >gi|283548478|gb|GG730299.1| GENE 533 607686 - 608462 917 258 aa, chain - ## HITS:1 COG:ECs2826 KEGG:ns NR:ns ## COG: ECs2826 COG0107 # Protein_GI_number: 15832080 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 258 1 258 258 505 96.0 1e-143 MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYADEGADELVFYDITASSDGRV VDKSWVSRVAEVIDIPFCVAGGIKSIDDAALILSFGADKISINSPALADPELITRLADRF GVQCIVVGIDTWYDAKTGKYHVNQYTGDESRTRITQWETLDWVQEVQKRGAGEIVLNMMN QDGVRNGYDLEQLRKVRDVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN IGELKAYLATQGVEIRIC >gi|283548478|gb|GG730299.1| GENE 534 608444 - 609181 811 245 aa, chain - ## HITS:1 COG:ECs2825 KEGG:ns NR:ns ## COG: ECs2825 COG0106 # Protein_GI_number: 15832079 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Escherichia coli O157:H7 # 1 245 2 246 246 427 91.0 1e-120 MIIPALDLIDGTVVRLHQGDYAQQRDYGNDPLPRLQDYAAQGAQVLHLVDLTGAKDPQKR QIALIKSLVAGVNVPVQVGGGVRTEEDVAALLDAGVARVVVGSTAVKSPEIVKGWFARFG TDALVLALDVRIDERGNKQVAVSGWQEDSGVSLEELVETYLPVGLKHVLCTDISRDGTLA GSNVALYEEVCAKFPQVAFQSSGGIGGIEDVAALRGTGVSGVIVGRALLEGKFTVEEAIQ CWQNA >gi|283548478|gb|GG730299.1| GENE 535 609181 - 609771 666 196 aa, chain - ## HITS:1 COG:STM2075 KEGG:ns NR:ns ## COG: STM2075 COG0118 # Protein_GI_number: 16765405 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Salmonella typhimurium LT2 # 1 196 2 197 197 391 92.0 1e-109 MNVVILDTGCANLNSVKSAVARHGYDPVVSRDADVVLRADKLFLPGVGTAQAAIDQLHER ELIELIKACTQPVLGICLGMQLLGRRSEESNGVSLLGIIEQDVPKMTDFGLPLPHMGWNR VYPQAGNRLFQGIDDGAYFYFVHSYAMPVNPWTIAQCHYGEPFTAAIQKDNFFGVQFHPE RSGAAGAQLLKNFLEM >gi|283548478|gb|GG730299.1| GENE 536 609771 - 610838 1230 355 aa, chain - ## HITS:1 COG:STM2074_2 KEGG:ns NR:ns ## COG: STM2074_2 COG0131 # Protein_GI_number: 16765404 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Salmonella typhimurium LT2 # 150 355 1 206 206 409 95.0 1e-114 MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPQVVPVLLKLQKAGFKLVMITNQDGLG TQSFPQADFDGPHNLMMQIFTSQGVTFDEVLICPHLSADECACRKPKVKLVEQYLVEQAM DTENSYVIGDRATDIQLAENMGISGLRYHRDTLNWAMIGEQLTKRDRYAHVERNTKETQI DVKVWLDREGHNKINTGVGFFDHMLDQIATHGGFRMEIAVKGDLYIDDHHTVEDTGLALG EALKLALGDKRGINRFGFVLPMDECLARCALDISGRPHLEYRAEFTYQRVGDLSTEMIEH FFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGDTLPSSKGVL >gi|283548478|gb|GG730299.1| GENE 537 610835 - 611914 1084 359 aa, chain - ## HITS:1 COG:hisC KEGG:ns NR:ns ## COG: hisC COG0079 # Protein_GI_number: 16129962 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Escherichia coli K12 # 1 359 1 356 356 654 88.0 0 MSTENFLSVTDLARKNVRELTPYQSARRLGGNGDVWLNANEYPTAVEFQLSQQTLNRYPE CQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLVRAFCEPGKDAILYCPPTYGMYSVSA ETIGVECRTVPTLDNWQLDLQGIADKLDGVKVVYVCSPNNPTGQLINPQDLRALLDMTQG KAIVVADEAYIEFCPQATLAGWLSEYPHLVVLRTLSKAFALAGLRCGFTLANEEIITLLL KVIAPYPLSTPVADIAAQALTPQGVAAMRQRVEQILQERQYLVENLQTIRCVEQVFDSET NYVLARFTASSSVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALRAEQV >gi|283548478|gb|GG730299.1| GENE 538 611911 - 613215 1337 434 aa, chain - ## HITS:1 COG:STM2072 KEGG:ns NR:ns ## COG: STM2072 COG0141 # Protein_GI_number: 16765402 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 434 1 434 434 719 89.0 0 MSFNTLIDWNSCSPEQQRELLMRPAISASDSINRTVAEILENVKNNGDRALREYSAKFDK TEVGALRVTPEEIQQAGDRLSDELKQAMQAAVRNIDAFHSAQILPPVDIETQPGVRCQQV TRPIASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLCSPPPIADEILYAAQLCGVKE VFNVGGAQAIAALALGTESIPMVDKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVL VIADSGATPDFVASDLLSQAEHGPDSQVILLTPDATLAEDVAKAVERQLAELSRADTARQ ALSASRLIVAKDLAQCVAISNAYGPEHLIIQTRSARELVDDITSAGSVFLGDWSPESAGD YASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELTPQGFSALAATIETLAAAERLTAHK NAVTLRVNALKEQA >gi|283548478|gb|GG730299.1| GENE 539 613342 - 614241 1177 299 aa, chain - ## HITS:1 COG:hisG KEGG:ns NR:ns ## COG: hisG COG0040 # Protein_GI_number: 16129960 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Escherichia coli K12 # 1 299 1 299 299 565 97.0 1e-161 MLDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPG LVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPV ALNGKRIATSYPHLLKRYLDQKGVSFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEAN GLREVEVIYRSKACLIQRDGEMAEAKQQLIDKLLTRIQGVIQARESKYIMMHAPSERLDE VIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME >gi|283548478|gb|GG730299.1| GENE 540 614607 - 615431 820 274 aa, chain + ## HITS:1 COG:STM2070 KEGG:ns NR:ns ## COG: STM2070 COG0451 # Protein_GI_number: 16765400 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Salmonella typhimurium LT2 # 1 274 1 274 274 483 91.0 1e-136 MKKVAIVGLGWLGMPLAMSLAARGWQVTGSKTTLDGVEAARMSGIESYSLRLEPELVCEA DDLDALMDADALVITLPARRSGPGETFYLQAMQELVDSALAYRIPRIIFTSSTSVYGDVQ GIVKEGTPRNPVTASGRVLKDLEDWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKTAPD GYHGVNLVHLDDVVSAITLLLQAPRGGHIYNICAPMHPARNVFYPQMARQLGMEPPEFRG GADNGKGKVIDGSRICNELGFEYQYPDPLVMPME >gi|283548478|gb|GG730299.1| GENE 541 615473 - 616402 845 309 aa, chain + ## HITS:1 COG:ECs2817 KEGG:ns NR:ns ## COG: ECs2817 COG0583 # Protein_GI_number: 15832071 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 307 8 314 316 558 88.0 1e-159 MKPLLDVLIILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT RTGQMLLEKGREVLHSVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIESFYQRHS VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPAGSEFGFARLGALEQVFVVAPHHPLA QEQEPLHRRTIRRFRAIVVGDNAHQGNISGVQALDDQEAITVFDFKTKLELQISGLGCGY IPRYLAQRFLDSGALVEKKVVGQILFEPVWIGWNEQTAGLASAWWRDAILANSAIAGVYV KTDADKSIS >gi|283548478|gb|GG730299.1| GENE 542 616536 - 616745 94 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085183|ref|ZP_06570969.1| ## NR: gi|291085183|ref|ZP_06570969.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 25 69 1 45 45 94 100.0 3e-18 MTTGTSVSVLRNSTREVFGVALCDMVIPHYGENRRVSKKLPHFLLILSDNNCRFLSKYLS GTKPGLFFE >gi|283548478|gb|GG730299.1| GENE 543 616672 - 618033 1825 453 aa, chain + ## HITS:1 COG:STM2068 KEGG:ns NR:ns ## COG: STM2068 COG0531 # Protein_GI_number: 16765398 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 1 453 3 454 454 801 97.0 0 MSHNATPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVSGMTDGHVPTAYAFALI AILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKIY FEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIVLLQVVLIAVILGMVVYGVFE GEGAGTLASSRPFWSGDAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFL TALIGGLIFIVSTYLLQLYFPDISRFKDPDASQPEIMLYVAGKFFQVGALIFSTITVLAS GMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWRTPSMNIILVGAIALLAINFDLVMATA LINFGALVAFTFVNLSVISQFWIREKRNKTLKDHFQYLFLPMCGALTVGALWVNLEESSM VLGLIWAGIGLIYLACVTKSFRNPVPQYDEDIA >gi|283548478|gb|GG730299.1| GENE 544 618093 - 619517 1465 474 aa, chain - ## HITS:1 COG:sbcB KEGG:ns NR:ns ## COG: sbcB COG2925 # Protein_GI_number: 16129952 # Func_class: L Replication, recombination and repair # Function: Exonuclease I # Organism: Escherichia coli K12 # 1 474 2 475 475 906 91.0 0 MIDGKQQPGFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQP EAVLITGITPQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFY DPYAWSWQNDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAH DAMADVYATIAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRG NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLV HINKCPVLAQANTLRPEDADRLGINRQHCLDNLNLLRENPQVRDKVVAIFADAEPFAPSD NVDTQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDE AEQQRWLDHRRQVFTPEFLQNYANELQTLSQQYADNKEKLMLLKSLWQYAQEIV >gi|283548478|gb|GG730299.1| GENE 545 619918 - 622191 1665 757 aa, chain + ## HITS:1 COG:STM2065 KEGG:ns NR:ns ## COG: STM2065 COG0243 # Protein_GI_number: 16765395 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 757 1 758 758 1371 88.0 0 MSISRRNFLRGVGIGCSACAIGSFPPGALARNSPERIKGKTSLTPSLCEMCSFRCPIQAQ VINNKTVFIQGNPHAPQQGTRVCARGGSGVSLVNDPHRIVKPMKRTGPRGSGEWQVISWQ QAYKEIAEKMAAIKAQHGPEGIVFSSKSGSLSGHLFHLATAFGSPNTFTHASTCPAGKAI AAKVMMGGDLAMDIANTRYMVSFGHNLYEGIEVADTHELMTAQEKGAKMVSFDPRLSIFS SKAGEWHALKPGGDLPVLMAMCHVMINENLYDADFVARYTTGFDQLTEAVQETTPEWAQK QADVPADVIVRVTREMAACAPHAIVSPGHRATFSQEEIDMRRMIFTLNALLGNIEREGGL YQKKAAATYNKLAGEKVAPVLAKPDVKLPKPTAQRIDLVAPQFKYIAAGGGVVQSIIDAV LNQTPYPVKGWIMSRHNPFQTVTCRPDLVKTVEQLDLVVSCDVYLSESAAYADYLLPECT YLERDEEVSDMSGLNPAYALRQQVVEPIGEARPSWQIWKELAVQLGLGQFYPWQDMQTRQ LYQLNGDHALSAELRQKGYREWGVPLLLREPESVRQFATRYPGAAAVDGDGTYGEQLRFK SPSGKIELYSEELDTLLPGYGIPRARNFALKGDNELYFIQGKVAVHTNGATQYVPLLSEL MWDNAVWIHPQTAREKGIKSGDDIWLENATGKEKGKALVTAGIRPDTLFVYMGFGAKAGA KTAATTHGIHCGNLLPHVTSPVSGTVVHTAGVTLRRA >gi|283548478|gb|GG730299.1| GENE 546 622206 - 622784 352 192 aa, chain + ## HITS:1 COG:STM2064 KEGG:ns NR:ns ## COG: STM2064 COG0437 # Protein_GI_number: 16765394 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 1 191 1 191 192 319 84.0 2e-87 MNQSTNPYVMLHDEKRCIGCQACTVACKVLNDVPEGYSRLQVQIRSPEQEPEVLSHFQFV RVSCQHCEDAPCVSVCPTGASFRDENGVVQVDKSRCIGCDYCVAACPFHVRYLNPQTGIA DKCNFCADTRLNVGQSPACVFVCPTDALKFGRRDDPEIEHWINQKEVYRQQDTRSGPVSI YRRKEIHQEGKV >gi|283548478|gb|GG730299.1| GENE 547 622781 - 623548 821 255 aa, chain + ## HITS:1 COG:STM2063 KEGG:ns NR:ns ## COG: STM2063 COG4117 # Protein_GI_number: 16765393 # Func_class: C Energy production and conversion # Function: Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) # Organism: Salmonella typhimurium LT2 # 1 253 1 248 254 384 84.0 1e-106 MNSIWGAELNYAPDYWPLWLIYAGVVIVLMIAGLVTHALLRRMLAPKTATGEEHRDYLYS LAVRRWHWGNALLFILLLLSGLFGHFSVGPVALMVQIHTWCGFALLAFWIGFVLINATSG NGCHYRVKFSGLISRCLLQTRFYLYGIMKGEPHPFAATAKDKFNPLQQLAYLAIMYALVP LLIVTGLLCLYPQAIGAGPVMLVLHMALAIVGLLFICAHIYLCTLGDTPGQIFRSMIDGY HRHRSHHAEAAPRKG >gi|283548478|gb|GG730299.1| GENE 548 623687 - 624853 1105 388 aa, chain + ## HITS:1 COG:STM2062 KEGG:ns NR:ns ## COG: STM2062 COG1686 # Protein_GI_number: 16765392 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Salmonella typhimurium LT2 # 1 388 3 390 390 723 89.0 0 MKRRLFIAASLFAMSFSPAWATNVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRN PASLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRD LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSS AYDLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG FNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGTERIW YGDKEKISLGTEQDFWMALPKAEVANIKAKYVLDKKELVAPIAAHQRVGEIELYDRDKLV AQWPLVTLESVSEGGVFSRLSDYFHHKA >gi|283548478|gb|GG730299.1| GENE 549 624978 - 625445 440 155 aa, chain + ## HITS:1 COG:ECs2811 KEGG:ns NR:ns ## COG: ECs2811 COG3449 # Protein_GI_number: 15832065 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Escherichia coli O157:H7 # 1 155 1 155 157 246 75.0 1e-65 MEYEIKQVDKRRVAGFHMVGPWEQTVKQGFEQLMKWVDGKHVVPLEWIAVYYDNPDVVPA EKLRCDTVVSVPADFAIPENSEGVILTEVAGGDYAVAVARVENHDFATPWYQFFDRLTQD ATHEIAAKPCFEVYMNNGMEDGYWDIEMYVPVQSK >gi|283548478|gb|GG730299.1| GENE 550 625532 - 626590 856 352 aa, chain + ## HITS:1 COG:STM2060 KEGG:ns NR:ns ## COG: STM2060 COG1289 # Protein_GI_number: 16765390 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 352 1 352 352 618 89.0 1e-177 MRADKSLSPFEIRLYRHYRVVHGIRIALAFLLTFLLVRLLNIPEGTWPLITLVVIMGPIS FWGNVVPRAFERIGGTILGSVLGLVALRLELFSLPLMLIWCAVAMFLCGWLALGKKPYQA LLIGITLAVVVGAPAGDMNTALWRGGDVILGSLLAMLFTGIWPQRAFIHWRIQLAHCVTG YNRVYQAALSPNLLEQPRLEKHLQQLLSEVVKMRGLIVPASKETHIQKSIFEAIQTVNRN LVCMLELQINALWASRTSHFVMLNAHTLRETQLRTQQALLTITHALYEGNPQPVLANTEK LNDTVEELRQLIAEHKGDNVAETPIHGYVWLNMEMARQLELLSHLICRALRK >gi|283548478|gb|GG730299.1| GENE 551 626829 - 627164 521 111 aa, chain + ## HITS:1 COG:ECs2809 KEGG:ns NR:ns ## COG: ECs2809 COG2926 # Protein_GI_number: 15832063 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 109 23 131 131 172 97.0 1e-43 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA IQGIIASMKSDYEDRVDDYIIKNAEISKERRDISKKLKAMGELKNGEAKAE >gi|283548478|gb|GG730299.1| GENE 552 627204 - 628070 599 288 aa, chain - ## HITS:1 COG:STM2058 KEGG:ns NR:ns ## COG: STM2058 COG4542 # Protein_GI_number: 16765388 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase # Organism: Salmonella typhimurium LT2 # 1 288 13 300 300 408 75.0 1e-114 MAVAQCPASCGELIQGWILGSEKLVSCPVEWYSTVEVTSGSPLAEERSLSRAMVDRLLQL WQYPAQMSKDIRIDIQSTIPVAKGMASSTADIAATAVATAHHLGHQLDEPTLAQLCVELE PTDSTVFRKLTLFDHNDASTQISCEAQPQLDLLVLESPETLRTADYHRIPRHAGLQAGAP ALKQAWEKVQDACISQNPYRLGEAATLSAVASQLLLPKPDFDLLLALVEECDLYGVNVAH SGSVVGLMLDRTRHDVDYIKWMLTQKKLTTHWPEQHLLRMVAGGVELQ >gi|283548478|gb|GG730299.1| GENE 553 628163 - 629362 968 399 aa, chain - ## HITS:1 COG:STM2057 KEGG:ns NR:ns ## COG: STM2057 COG0282 # Protein_GI_number: 16765387 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Salmonella typhimurium LT2 # 1 399 6 404 404 709 86.0 0 MAINAGSSSLKFQLLAMPQGEMICQGLIERIGMSDAQVTLKTPAQKWQETLPVADHREAV TLLLEKLLSHNIISSLQEIDGVGHRVAHGGESFKDSALVTDETLAEIDRLAELAPLHNPV NALGIAVFRQLLPETPAVAVFDTAFHQTLDEPSFIYPLPWRYYSELGIRRYGFHGTSHKY VSARLAEKLGVPLSALRVVCCHLGNGSSICAIKGGQSVNTSMGFTPQSGVMMGTRSGDID PSILPWIALREGKTPQQLNQLLNNESGLLGVSGISPDYRDVEHAADAGNHQAALALTLFA ERIRATIGSYIMQMGGLDALVFTGGIGENSARARAAICRNLNFLGLAVDEEKNQRNATFI QTENAMVKVAVINTNEELMIAQDVMRLAISETVTLGIPA >gi|283548478|gb|GG730299.1| GENE 554 629362 - 629814 278 150 aa, chain - ## HITS:1 COG:STM2056 KEGG:ns NR:ns ## COG: STM2056 COG4917 # Protein_GI_number: 16765386 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 1 150 1 150 150 244 78.0 6e-65 MKRIMLIGPSQCGKTSLTQCMRGEALHYQKTQAIVWSATTIDTPGEYLENRCLYSALLAS ACEADIIALVLNADAPWSPFSPGFTGPMNRPVIGLVTKADLANPQRISLVERWLVEAGAQ KVFVTSALENTGVDEMFIFLNAKELSCLTK >gi|283548478|gb|GG730299.1| GENE 555 629819 - 630169 320 116 aa, chain - ## HITS:1 COG:STM2055 KEGG:ns NR:ns ## COG: STM2055 COG4810 # Protein_GI_number: 16765385 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 1 116 1 116 116 207 96.0 3e-54 MERQPTTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDSVSAIGILTITPSEASIIA CDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMRFTACPITRT >gi|283548478|gb|GG730299.1| GENE 556 630169 - 630723 581 184 aa, chain - ## HITS:1 COG:STM2054 KEGG:ns NR:ns ## COG: STM2054 COG4577 # Protein_GI_number: 16765384 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 184 1 184 184 306 93.0 1e-83 MSQAIGILELTSIAKGMEAGDAMLKSANVNLLVSKTICPGKFLLMLGGDVGAVQQAIATG TSLAGDMLVDSLVLPNIHASVLPAISGLNSVDKRQAVGIVETWSVAACICAADRAVKASN VTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHESMWRQ MVEG >gi|283548478|gb|GG730299.1| GENE 557 630726 - 632081 906 451 aa, chain - ## HITS:1 COG:STM2053 KEGG:ns NR:ns ## COG: STM2053 COG4656 # Protein_GI_number: 16765383 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Salmonella typhimurium LT2 # 1 451 1 451 451 698 84.0 0 MKTAITAEPTLYDAQTIRERVRAAGVVGAGGAGFPAHVKLQAQVDTFLVNAAECEPMLKV DQQLMSVQADRLIRGVQYAMTATGASAGIIALKEKYQKAINALTPLLPAGIRLHILPDVY PAGDEVLTIWMATGRRVPPAALPVSVGVVVNNVQTVLNIARVVEQQYPVTRRTLTVNGAV AKPVTLSVPVGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDTPVSKTTGGLLVLP KSHALIQRRMQDERTVLSVAKTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYQQAATP QLLLTALTCSECNVCESVACPVGISPMRINRMLKRELRALNHRYEGPLNPEDEMAKYRLI PVKRLIAKLGLSDWYHDAPLVETDYPTSKTTLLLRQHIGASAIPCVQQGEHVVRGQCVAD VPAGALGAPVHASIDGIVSEITEQSITVIRG >gi|283548478|gb|GG730299.1| GENE 558 632078 - 633190 657 370 aa, chain - ## HITS:1 COG:STM2052 KEGG:ns NR:ns ## COG: STM2052 COG1454 # Protein_GI_number: 16765382 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Salmonella typhimurium LT2 # 1 370 1 370 370 612 83.0 1e-175 MKSFSLQTRLYSGQGSLDVLKRFTNKHIWIICDGFLARSPLIEKLRNALPADNRISIFSD ITPDPTISTVVQGIAQMQSLRPDVVIGFGGGSALDAAKAIVWFSRQFGIEIETCVAIPTT SGTGSEVTSACVISDPDKGIKYPLFNNALYPDMAILDPTLVVSVPPAITANTGMDVLTHA LEAYVSTKASDFTDALAEKAAQIVFQYLPVAVSKGDCLATRGKMHNASTLAGMAFSQAGL GINHAIAHQLGGQFHLPHGLANALLLTHVIHFNARDPRAAKRYARFAKACHLCPDNANDT AALNALVHHIELLKKQCAIPSLVDALKDAKQAWSQRIPSMVQAALADVTLQTNPRVADAS AVQELLEELL >gi|283548478|gb|GG730299.1| GENE 559 633201 - 634586 1095 461 aa, chain - ## HITS:1 COG:STM2051 KEGG:ns NR:ns ## COG: STM2051 COG1012 # Protein_GI_number: 16765381 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 461 1 464 464 790 90.0 0 MNTSELETLIRNILSEQLAPAKAEVKGNGIFPSVGEAIDAAHQAFLRYQQCPLKTRSAII SALREELTPHLASLAAESATETGMGNKEDKFLKNKAALDNTPGIEDLTTTALTGDGGMVL FEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSVYFSPHPGAKAVSLKLIAMIEDIAF RCCGIRNLVVTVTEPTFEATQQMMAHPKIAVMAITGGPGIVAMGMKSGKKVIGAGAGNPP CIVDETADLVKAAEDIINGASFDYNLPCIAEKSLIVVNAVAERLVQQMQSFGALLLNSEE VDKLRAVCLPEGMANKKLVGKSPATLLEAAGIPVPAKAPRLLIGIVNADDPWVTSEQLMP MLPVVTVSDFDSALTLALKVEEGLHHTAIMHSQNVSRLNLAARTLQTSIFVKNGPSYAGI GVGGEGFTTFTIATPTGEGTTSARTFARSRRCVLTNGFSIR >gi|283548478|gb|GG730299.1| GENE 560 634583 - 635590 732 335 aa, chain - ## HITS:1 COG:STM2050_1 KEGG:ns NR:ns ## COG: STM2050_1 COG2096 # Protein_GI_number: 16765380 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 271 83.0 1e-72 MAIYTRTGDAGTTALFTGQRVSKTHPRVEAYGTLDELNAALSLCVCVAKNPQHRQLLENI QLQLFWFSAELASESEQPNPEQRYISSEEIAALEAAIDTAMGRVPPLHSFILPGRSEAAS RLHFARTLARRAERRLVELSTDIAVRHVLMRYINRLSDCLYALARAEDHDAHQNDIIGKV AERYLAAIRTSATGESAMSLSFQELHQLTRAAVTRAEELQIPVVISIVDANGTQTVTWRM PDALLVSSELAPKKAWTAVAMKTATHELTPAVQPGAELYGLESHMQGKVVTFGGGYALWR EGVLLGGLGISGGSVEQDMDIAETAIAAINVRTHQ >gi|283548478|gb|GG730299.1| GENE 561 635599 - 635874 325 91 aa, chain - ## HITS:1 COG:STM2049 KEGG:ns NR:ns ## COG: STM2049 COG4576 # Protein_GI_number: 16765379 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 90 1 90 91 132 93.0 1e-31 MHLARVTGVVVSTQKSPSLVGKKLLLVRRVSADGELPASPASGDEVAVDSVGAGTGELVL LSSGSSARHVFSGPNEAIDLAIVGIVDTLSR >gi|283548478|gb|GG730299.1| GENE 562 635878 - 636369 334 163 aa, chain - ## HITS:1 COG:no KEGG:CKO_00788 NR:ns ## KEGG: CKO_00788 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 163 1 163 163 185 65.0 6e-46 MNNELLQRIIEEVVSRLKKRAENTLTLSVAQLREADPRTLCCRYSSLYILQADLPLLAQI AEGCPTDVSVVTIHEALACGVRVNISLQHRLLPAIPVKKLARLPLEFSDELGRIIVLHPD KLLSYADVAQLQGGVMVLRRRCVVTALAQDAVSRRNIQLIKQE >gi|283548478|gb|GG730299.1| GENE 563 636366 - 636998 432 210 aa, chain - ## HITS:1 COG:STM2047 KEGG:ns NR:ns ## COG: STM2047 COG4869 # Protein_GI_number: 16765377 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol utilization protein # Organism: Salmonella typhimurium LT2 # 1 210 1 210 210 350 87.0 1e-96 MDKQQLETTVAKVLDEMRERPIPLGISNRHIHLCAEDYNRLFPNHPISEKKGLLQPGQYA AEQTVTLVGPKGQLKNVRLLGPLRSTSQVEISRTDARTLGIAAPLRMSGNIQGTPGIRLV SPFAELDLTSGVIVAQRHIHMSPLDALILRVSHGDKVSVAINGDERRLIFDNVAVRVSPD MRLEMHIDTDEANAAGADNPQAFATLVTSR >gi|283548478|gb|GG730299.1| GENE 564 636998 - 637462 204 154 aa, chain - ## HITS:1 COG:STM2046 KEGG:ns NR:ns ## COG: STM2046 COG4577 # Protein_GI_number: 16765376 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 154 8 160 160 184 68.0 7e-47 MKQSLGLLEVSGLALAISCADVMAKAASITLVGLEKTNGSGWTVIKIIGDVASVQAAIST GASLADQKNGLVAQKVISRPGEGILSHSVTVQPEPVSESIPAVPQEETSVESSSPEAPQH AELISCNLCLDPACPRQKGEPRSLCLHSGKRGEA >gi|283548478|gb|GG730299.1| GENE 565 637487 - 637762 350 91 aa, chain - ## HITS:1 COG:STM2045 KEGG:ns NR:ns ## COG: STM2045 COG4577 # Protein_GI_number: 16765375 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 91 1 91 91 125 97.0 2e-29 MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLITVMVRGDVGAVKAAVDAG SAAASAVGEVKSCHVIPRPHSDVEAILPKSA >gi|283548478|gb|GG730299.1| GENE 566 637782 - 638132 156 116 aa, chain - ## HITS:1 COG:no KEGG:SSON_2064 NR:ns ## KEGG: SSON_2064 # Name: pduH # Def: putative propanediol utilization diol dehydratase reactivation protein # Organism: S.sonnei # Pathway: not_defined # 1 116 1 116 116 175 72.0 5e-43 MESNLTTPAIVIFTIGDCADAWNDVLLGIEEEGIPFVILQSQSSDVIHNAWLAACQSPLL VGIGCSREKLVVHYKNLPTSAPLFTLTYQQDSHARRSIGNNAARLVKGIPFRECRS >gi|283548478|gb|GG730299.1| GENE 567 638122 - 639954 1532 610 aa, chain - ## HITS:1 COG:no KEGG:CKO_00793 NR:ns ## KEGG: CKO_00793 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 610 1 610 610 1027 95.0 0 MRYIAGIDIGNSSTEVALATLDEAGTLNIINSALAETTGIKGTLRNVFGIQEALTLAAKN AGINVSNISLIRINEATPVIGDVAMETITETIITESTMIGHNPKTPGGVGLGVGITITPE DLLSRPADTPYILVVSSAFDFADVATMINASVRAGYQLTGVILQQDDGVLVSNRLTHPLP IVDEVLHIDRIPLGMLAAIEVAVPGKVIETLSNPYGIATVFGLNADETKNIVPMARALIG NRSAVVVKTPSGDVKARAIPAGNLELQSQGRTVRVDVAAGADAIMKAVGECPKLDNVTGE AGTNIGGMLEHVRQTMAELTNKPSQEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQAVGIA SMVKSDRLQMAMIAQEITQKLNIDVQVGGAEAEAAILGALTTPGTTRPLAILDLGAGSTD ASIINPKGEIIATHLAGAGDMVTMIIARELGLDDRYLAEEIKKYPLAKVESLFHLRHEDG SVQFFPAPLPPTVFARVCVVKPDELVPLPGELALEKVRAIRRSAKERVFVTNALRALRQV SPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGTEGPRNAVATGLIL SWYKAFAHGK >gi|283548478|gb|GG730299.1| GENE 568 639970 - 640488 564 172 aa, chain - ## HITS:1 COG:STM2042 KEGG:ns NR:ns ## COG: STM2042 COG4910 # Protein_GI_number: 16765372 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, small subunit # Organism: Salmonella typhimurium LT2 # 1 172 1 173 173 267 89.0 7e-72 MNTDAIESMVRDVLSRMNSLQGESATPATASSSVRSAKITDYPLANKHPEWVKTATNKTL DDFTLENVLSNKVTAQDMRITPETLRLQAEIAKDAGRDRLAMNFERAAELTAVPDDRILE IYNALRPYRSTKDELMAIADDLEHRYQAKICAAFVREAAALYVERKKLKGDD >gi|283548478|gb|GG730299.1| GENE 569 640503 - 641177 845 224 aa, chain - ## HITS:1 COG:mll6722 KEGG:ns NR:ns ## COG: mll6722 COG4909 # Protein_GI_number: 13475607 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Mesorhizobium loti # 51 224 577 751 756 119 41.0 6e-27 MEINEKLLRQIIEDVLSEMQTSDKPVSFRASAAASAPQAAAVQGDSFLTEIGEAKQGQQQ DEVIIAVGPAFGLSQTVNIVGIPHKNILREVIAGIEEEGIKARVIRCFKSSDVAFVAVEG NRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLLTLETYRQIGKNAARYAKRES PQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQELRVAL >gi|283548478|gb|GG730299.1| GENE 570 641188 - 642852 1779 554 aa, chain - ## HITS:1 COG:STM2040 KEGG:ns NR:ns ## COG: STM2040 COG4909 # Protein_GI_number: 16765370 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Salmonella typhimurium LT2 # 1 553 1 553 554 1098 98.0 0 MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGMVTELDGKSASEFD LIDHFIARYGINLARAEEVMAMDSVKLANMLCDPNVKRKDIVPLTTAMTPAKIVEVVSHM NVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAEGAWRGFDEQETTVAVARYAP FNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPW SKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSV SCIGVPSAVPSGIRAVLAENLICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFI SSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQ AVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQG GFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEE IKNIPGALDPNELG >gi|283548478|gb|GG730299.1| GENE 571 642871 - 643683 911 270 aa, chain - ## HITS:1 COG:STM2039 KEGG:ns NR:ns ## COG: STM2039 COG4816 # Protein_GI_number: 16765369 # Func_class: E Amino acid transport and metabolism # Function: Ethanolamine utilization protein # Organism: Salmonella typhimurium LT2 # 38 270 1 233 233 402 96.0 1e-112 MSSNELVEQIMAQVIARVATPEQQAIPENNHPTRETAMAEKSCSLTEFVGTAIGDTVGLV IANVDSALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTKGG AGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYANEAGHIEMQYTARASYALEKAFG APIGRACGVIVGAPASVGVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAV RQAVISAREIGKTVLGTLGSEPKNDRPSYI >gi|283548478|gb|GG730299.1| GENE 572 643683 - 643964 321 93 aa, chain - ## HITS:1 COG:STM2038 KEGG:ns NR:ns ## COG: STM2038 COG4577 # Protein_GI_number: 16765368 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; C Energy production and conversion # Function: Carbon dioxide concentrating mechanism/carboxysome shell protein # Organism: Salmonella typhimurium LT2 # 1 93 1 93 94 129 100.0 1e-30 MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDA GAAAARNVGEVKAVHVIPRPHTDVEKILPKGIS >gi|283548478|gb|GG730299.1| GENE 573 644489 - 645298 635 269 aa, chain + ## HITS:1 COG:STM2037 KEGG:ns NR:ns ## COG: STM2037 COG0580 # Protein_GI_number: 16765367 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Salmonella typhimurium LT2 # 1 264 1 264 264 442 89.0 1e-124 MNDSLKAQCIAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICIIWGLGISLAVYLTAGI SGAHLNPAITIALWLFACFPGRKVLPYTVAQVAGAFGGALLAYLLYGSLFTEYESAHQMV RGSLESLQLASIFSTYPAAALSVWQAALVEVVITSILMGMIMALTDDGNGVPRGPLAPLL IGILVAVLGASTGPLTGFAMNPARDFGPKLFAWMAGWGDVAMTGGRDIPYFIVPIVAPII GACAGAAIYRYFIGKNLPCNTCKLEENES >gi|283548478|gb|GG730299.1| GENE 574 645502 - 646413 489 303 aa, chain + ## HITS:1 COG:STM2036_1 KEGG:ns NR:ns ## COG: STM2036_1 COG4936 # Protein_GI_number: 16765366 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Predicted sensor domain # Organism: Salmonella typhimurium LT2 # 1 199 1 199 199 390 93.0 1e-108 MISASALNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPQHSTRC RMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVGLVDIL NVDDRWQADPELLSEFRNVPEMDYSRVIASADLLKLIVENCLKKQLNFVVIKDNPQQAEP VRANRTPNPHDSKMKKALRYIDAHLSDELRLEDVASHVYLSPYYFSKLFKKYQGIGFNAW VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINVISRG ESA >gi|283548478|gb|GG730299.1| GENE 575 646987 - 648366 1064 459 aa, chain + ## HITS:1 COG:STM2035 KEGG:ns NR:ns ## COG: STM2035 COG1797 # Protein_GI_number: 16765365 # Func_class: H Coenzyme transport and metabolism # Function: Cobyrinic acid a,c-diamide synthase # Organism: Salmonella typhimurium LT2 # 1 459 1 459 459 774 82.0 0 MAANFHAFVLAGTGSGCGKTTVTLGLLSLLKKRGLRVQPCKVGPDYLDTGWHTAVCGTAS RNLDSFMLPAPTLNALFREQMQHADIAVIEGVMGLYDGYGTDPNYCSTAAMAEQLGCPVI LLVDGKAVSTSIAATVMGFQHFDPTLNIAGVIVNRVNSETHYQLLKVAIERYCSVPVLGY VPRMDGVALPERHLGLVTARESVINQQPWQAFAATLEQTLDIDALLTLSQLTHFPAGEWP ALPATDAGEGLTLAIADDEAFNFYYPDNITLLERTGLKIVRFSPLHDTCLPDCQMIWLGG GYPELHAAALARNVSMLKQLRAAHQRGVAIYAECGGLMYLGSSLEDSHGDSWLMADIIPG HSKMGKRLTRFGYCEAQAAQQTLLAAAGEVLRGHEFHYSDFTPETPAVMHCRKVRDGKTL QAWSGGWQVGNTFASYLHVHFAQRPQMLNHWLAAARSAL >gi|283548478|gb|GG730299.1| GENE 576 648363 - 649322 938 319 aa, chain + ## HITS:1 COG:STM2034 KEGG:ns NR:ns ## COG: STM2034 COG1270 # Protein_GI_number: 16765364 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobD/CbiB # Organism: Salmonella typhimurium LT2 # 1 319 1 319 319 478 84.0 1e-135 MTILAWCVAWLLDFIIGDPQNWPHPVRWIGNLISAIQRVVRRYCHSDRALRIGGAAMWVV VVGLTWAVSWGVLTLATAIHPWLGWVVEVWMIFTVLAGRCLANAALDVERPLRAGNLAAS REKLSWIVGRDTSQLQPQQINRAVVETVAENTVDGIIAPLFFLLLGGAPLAMAYKAVNTL DSMVGYKHEKYRAIGMVSARLDDVANYIPARLSWLLLGMAAFLCRKDGSRALQIGWRDRY NHSSPNCAWSEASVAGALGIRLGGPNDYFGERVEKPWIGDAQRDISVDDISHTIRLMWVA STLALALFIALRWLLVGVA >gi|283548478|gb|GG730299.1| GENE 577 649333 - 649965 747 210 aa, chain + ## HITS:1 COG:STM2033 KEGG:ns NR:ns ## COG: STM2033 COG2082 # Protein_GI_number: 16765363 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin isomerase # Organism: Salmonella typhimurium LT2 # 1 209 1 210 210 316 81.0 2e-86 MQYIQQPQAIEAKSFDIIGEIIRETRPDYQFASPLHEAIIKRVIHTTADFDWLDILWFSS DVLEQFCAALSRSSVIYTDTTMALSGINKTLLAKFGGECRCYISDPRVVRTAKEQGITRS MAAVDIAVKEEGEKLFVFGNAPTALFRLLEHDVAVSGVVGVPVGFVGAQESKDALTQSNQ PAIAALGRKGGSNVAAAIVNAMLYHMQGAR >gi|283548478|gb|GG730299.1| GENE 578 649962 - 651098 1247 378 aa, chain + ## HITS:1 COG:STM2032 KEGG:ns NR:ns ## COG: STM2032 COG1903 # Protein_GI_number: 16765362 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiD # Organism: Salmonella typhimurium LT2 # 1 378 1 379 379 647 90.0 0 MSEAFDTPVWHNGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLNV ESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLDDTGVIALQGGEGVGTVTRKGIGL PVGSSAINRTPRQTIESAVREAIGPNRGAQIEIFAPEGEERAQKTYNSRLGILGGISIIG TTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDTQVVVTMSN FVGYMIEEAVRLGFRQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLE LLTLVSDCDTTEAAMEHIEAYGFQHIYNHLAKRICMRVLQTLRFTKNPPTCDAIMFSFDN QVLGSNRPVAEIAEEMQC >gi|283548478|gb|GG730299.1| GENE 579 651092 - 651697 518 201 aa, chain + ## HITS:1 COG:STM2031 KEGG:ns NR:ns ## COG: STM2031 COG2241 # Protein_GI_number: 16765361 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6B methylase 1 # Organism: Salmonella typhimurium LT2 # 1 201 1 201 201 320 77.0 8e-88 MLTVVGMGPAGLHLMTPAARDAVVSADVLVGGKRHLQQFPDFTGEQFALGANIPELLNWI SAHQQQRVVVLASGDPLFYGIGTRMVAHFGIGKVRIIPGISAVQYLCAQSGIDMNDMWLT SSHGRSVCFDELARHHKVGMVTDALCGPREIAQQLITRGKGHRWMVIGENLAMENERIHF LPVSEINADYDMNAVVILDER >gi|283548478|gb|GG730299.1| GENE 580 651726 - 652256 507 176 aa, chain + ## HITS:1 COG:STM2030 KEGG:ns NR:ns ## COG: STM2030 COG2242 # Protein_GI_number: 16765360 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6B methylase 2 # Organism: Salmonella typhimurium LT2 # 1 176 14 189 192 298 83.0 3e-81 MTKEAVRALALSKLELHRASHLIDIGAGTGSVSIEAALQYPGLRVTAIERNPAALRLLDE NRQHFACANIDIFPGVAPMTITEKADAIFMGGSGGHLTDLIDWSMRQLHPAGRLVMTFIL QENLNTALSHLDHLGVQGVDCLQLQVSSLTTLGSGHYFKPNNPVFVIACQKEGNHV >gi|283548478|gb|GG730299.1| GENE 581 652249 - 653022 1014 257 aa, chain + ## HITS:1 COG:STM2029 KEGG:ns NR:ns ## COG: STM2029 COG2875 # Protein_GI_number: 16765359 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-4 methylase # Organism: Salmonella typhimurium LT2 # 1 257 1 257 257 464 92.0 1e-131 MSEIFDPRSVWFVGAGPGDRELITLKGYRLLQQAQVVIYAGSLINTELLEYCPAGAECHD SAELHLEQILDLMEAGVKAGKTVVRLQTGDVSLYGSVREQGEELTKRGIDWQVVPGVSAF LGAAAELGVEYTVPEVSQSLIITRLEGRTPVPEREQLESFASHRTSMAIYLSVQRIHRVA ERLIDGGYPATTPVAVIYKATWPESQTVRGTLADIGDKVREAGIRKTALILVGDFLGSEY HYSKLYAADFSHEYRKA >gi|283548478|gb|GG730299.1| GENE 582 653003 - 654058 1127 351 aa, chain + ## HITS:1 COG:STM2028 KEGG:ns NR:ns ## COG: STM2028 COG2073 # Protein_GI_number: 16765358 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiG # Organism: Salmonella typhimurium LT2 # 1 351 1 351 351 614 86.0 1e-176 MNTVKPESIALFCLTPGGVALAKRLAAMLPVTCFTSEKLLEEGFIPFENGFANTARDAFM NYSALIFIGATGIAVRVLAPLVNDKFCDPAVVVIDERAQHVISLLSGHAGGANALARYLA GMLGADPVITTATDVNDMAALDTLAFQLNARMSDFRSAVKIVNQMLVSNKRVGLWWDNEL TQDVSHCDRRGFITVTDLNQLPELDALVCITLRTNLPDLPVPHWKLVPQRVVAGIGCRRD TPFPLLAALLARQLEAQQLDPLALKAIGSITLKKDEQGLIQLASCCRVPFETFTADALRE HEHRFPASSFVRKTVGTGSVSGPAAWLLSHGQLLGETLREQGVTITLGVSH >gi|283548478|gb|GG730299.1| GENE 583 654058 - 654783 888 241 aa, chain + ## HITS:1 COG:STM2027 KEGG:ns NR:ns ## COG: STM2027 COG1010 # Protein_GI_number: 16765357 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-3B methylase # Organism: Salmonella typhimurium LT2 # 1 241 1 241 241 458 95.0 1e-129 MLTVIGIGPGSQAMMTMEAVEALQAAEIIVGYKTYTHLVKAFTGDKQVIKTGMCKEIERC HAAIELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLG APLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVICFYNPRSRGREGHLARAFELLSAS KSAQTPVGIVKSAGRKKQEKWLTTLGEMDFEPVDMTSLVIVGNKTTYVQDGLMITPRGYV L >gi|283548478|gb|GG730299.1| GENE 584 654780 - 655565 643 261 aa, chain + ## HITS:1 COG:STM2026 KEGG:ns NR:ns ## COG: STM2026 COG2099 # Protein_GI_number: 16765356 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6x reductase # Organism: Salmonella typhimurium LT2 # 1 261 1 261 263 441 83.0 1e-124 MNYGDVLVMGGTSDARMLCQQLDAANVAYTLSVATPTGKQLAGDIKGQVRCGRLEREQMI AWLQENRTRWVIDASHPYAEVVSRNIMSACAAAGVLLSRYQRPEQLSGLTHPHLHTVQSI QQACEVARRFGKRVLLTTGSKDLAIWREGLAEKTLLARVLPVPDVIQQCADLGFGVGEIF ALCGPFSAEFNAAFYRQCQADVVITKASGAEGGYQEKVQPCLDAGIPCIVITRPAPLVTG EELLESQAAFGARLTRWLAAA >gi|283548478|gb|GG730299.1| GENE 585 655576 - 656370 933 264 aa, chain + ## HITS:1 COG:STM2025 KEGG:ns NR:ns ## COG: STM2025 COG4822 # Protein_GI_number: 16765355 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiK, Co2+ chelatase # Organism: Salmonella typhimurium LT2 # 1 264 1 264 264 484 90.0 1e-137 MKKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLKQRDGIDID TPLQALQKLAEQGYQDVAIQSLHIINGDEYEKIVREVQSMRPLFSRLTLGVPLLSSHEDY AQLMQALQQQMPALGENEKVVFMGHGASHHAFAAYACLDHMMTAQRFPARVGAVESYPEV DVLIESLAQEGVTAVHLMPLMLVAGDHAINDMASDEDDSWKTLFNAAGIPATPWLSGLGE NPAVRAMFVAHLQQALNVTLEEAA >gi|283548478|gb|GG730299.1| GENE 586 656367 - 657080 710 237 aa, chain + ## HITS:1 COG:STM2024 KEGG:ns NR:ns ## COG: STM2024 COG2243 # Protein_GI_number: 16765354 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-2 methylase # Organism: Salmonella typhimurium LT2 # 1 237 1 237 237 426 88.0 1e-119 MNGKLYALSTGPGAADLITVRAARTLGNLDILYAPAGRKGGDSLALSIVREYIGEQTEVR CCHFPMSADSAEKEAVWDEVAAALVQEVEAGKQVGFITLGDAMLFSTWVFLLQRIGNPDW LEIVPGVTSFAAIAARSKTPLAMEQQSLAVVSCTAPEAEIQQALKQHDSLVLMKVYGRFA RIKALLQQEGLLDCALMMSEATLPGEQCWRHLNEVSDDQPLPYFSTILINKQWEYAQ >gi|283548478|gb|GG730299.1| GENE 587 657077 - 657814 838 245 aa, chain + ## HITS:1 COG:STM2023 KEGG:ns NR:ns ## COG: STM2023 COG0310 # Protein_GI_number: 16765353 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Co2+ transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 408 92.0 1e-114 MKLEQQLKQLSFSGLAAALLLIIVPEKAFAMHIMEGFLPPMWALAWWLLFLPCLWYGLVR LRQIVQEDSHQKVLLALCGAFIFVLSALKIPSVTGSCSHPTGVGLAVILFGPGVVAILGA IVLLFQALLLAHGGLTTLGANGMSMAVIGPVVGYMVWKMACRAGLRRDVCVFLCAMLADL VTYFVTSVQLGVAFPDPSAGAMGSIVKFMGIFCLTQIPIAIAEGLLTVMIYDQLTKRQLI TAQGH >gi|283548478|gb|GG730299.1| GENE 588 657817 - 658098 405 93 aa, chain + ## HITS:1 COG:STM2022 KEGG:ns NR:ns ## COG: STM2022 COG1930 # Protein_GI_number: 16765352 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 93 1 93 93 173 93.0 6e-44 MKKTLILLGMVVALVILPFFINHGGEYGGSDGEAESQIQAIAPHYEPWFQPLYEPASGEI ESLLFTLQGSLGAAVIFYILGYTKGRQRRDDRA >gi|283548478|gb|GG730299.1| GENE 589 658085 - 658762 759 225 aa, chain + ## HITS:1 COG:STM2021 KEGG:ns NR:ns ## COG: STM2021 COG0619 # Protein_GI_number: 16765351 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 327 81.0 7e-90 MTGLDRLSYQSRWFHVSPVRKFVLWLVMMLLAFTLPPLGQGIELLLIAALSCWLLRISFR RWCRWMALPFGFLTVGVVTIVFSFSRDPQTLLASIPVGSYWLGVSAPGLVTANETFWRSL AALAATFWLVLNLPFPQLIILLKRAHVPRLLTEQILLTWRFIFILLDEALAIHRAQTLRF GYRSLPLGYRSLAMLVGLLFTRVLIRYQQMTTTLDIKLYQGDFHL >gi|283548478|gb|GG730299.1| GENE 590 658771 - 659586 336 271 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 15 247 145 375 398 134 37 2e-29 MLATSALWFRYQDDPILKGLTLDFSTHAVTGLVGANGCGKSTLFMNLSGLLRPQQGAVMW QGKPLDYSKRGLLALRQQVATVFQDPDQQIFYTDIDSDIAFSLRNLGVDEAEIARRVEDA LTLVDARHFRHQPIQCLSHGQKKRVAIAGALVLQAQYLLLDEPTAGLDPSGRTQMIEIIK RIVAQGNHVVISSHDIDLIYEVSDAVFVLRRGEVLTHGTPGEVFARTDLIEQAGLTQPWL VKLHTELGLPLCKTEAEFFSCMRENALKEAS >gi|283548478|gb|GG730299.1| GENE 591 659583 - 661103 1768 506 aa, chain + ## HITS:1 COG:STM2019 KEGG:ns NR:ns ## COG: STM2019 COG1492 # Protein_GI_number: 16765349 # Func_class: H Coenzyme transport and metabolism # Function: Cobyric acid synthase # Organism: Salmonella typhimurium LT2 # 1 506 1 506 506 855 83.0 0 MTQAIMLQGTASDVGKSVLVAGLCRIFYQDGLRTAPFKSQNMALNSGITPEGKEMGRAQI FQAEAAGITPDVRMNPVLLKPTSDRKAQVVLMGKVATDMDAVSYHEYKPRLREQILSVYN SLAQEFDVLVLEGAGSPAEINLRDRDIVNMGMAEMAQCPVVLVADIDRGGVFASIYGTLA LLHDHERARVKGVIINKFRGDVALLYSGIEQIEALTGVPVLGVMPWLDVDLEDEDGVALQ RGKYLRTDKRDIDIAVVQLPHISNFTDFNALAAQPDVRVRYVRQPEDLAGADLVILPGSK NTLGDLVWLRESGMAHGVVQLQRNNVPVVGICGGYQMLGDTIIDEVESGLGTLPGLGLLN TVTHFAQHKTTTLVEGQMSSSLPDWLAGAAGLSVRGYEIHMGETEFTAQCQSVMTLRKDG GNVADGAVTPDGLAFGTYLHGLFDSDEFTRALVNGLRVRKGLAPLDPTFHYAQYKSQQFD LLADAMRQHIDIEKIYTIMQQHREPV >gi|283548478|gb|GG730299.1| GENE 592 661103 - 661645 459 180 aa, chain + ## HITS:1 COG:STM2018 KEGG:ns NR:ns ## COG: STM2018 COG2087 # Protein_GI_number: 16765348 # Func_class: H Coenzyme transport and metabolism # Function: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase # Organism: Salmonella typhimurium LT2 # 1 180 2 181 181 305 85.0 3e-83 MILVTGGARSGKSRHAEALIADSPNVLYIATSQIFDEEMAARIQHHRDGRPAHWRTAERW QHLDELIAAANDPQEAILLECITTMVTNLLFALGGDSDPDSWDYAAMEQSIEDEIRALIA ACQQCPATVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGIGVKIK >gi|283548478|gb|GG730299.1| GENE 593 661642 - 662385 713 247 aa, chain + ## HITS:1 COG:ECs2787 KEGG:ns NR:ns ## COG: ECs2787 COG0368 # Protein_GI_number: 15832041 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 247 1 247 247 365 85.0 1e-101 MSKLFWAMLSFISRLPVPARWSQGLDFEHYSRGIVMFPLIGVVLGGLTGLVFMALQPWCG VPLAALFAILTLALLTGGFHLDGLADTCDGIFSARRRERMLEIMRDSRLGTHGGLALIFV LLAKVLVVSELALRGTPMLAALAAACVAGRGTAVLLMYRHRYAREEGLGNVFIGKVTGRQ TCVTLGLAAILAAVLLPGMRGVAALVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGEL IFLLALL >gi|283548478|gb|GG730299.1| GENE 594 662464 - 663474 983 336 aa, chain + ## HITS:1 COG:STM2016 KEGG:ns NR:ns ## COG: STM2016 COG2038 # Protein_GI_number: 16765346 # Func_class: H Coenzyme transport and metabolism # Function: NaMN:DMB phosphoribosyltransferase # Organism: Salmonella typhimurium LT2 # 1 334 19 352 356 526 86.0 1e-149 MLRAQQHIDGLLKPPGSLGRLESLAVQLAGMPGLKGMPHVKDKAMLVMCADHGVWDEGVA VSPKVVTAIQAANMTRGTTGVCVLAAQAGAKVHVIDVGIDADPIPGVVNMRVARGCGNIA QGPAMSRSQAEELLLEVMRYTRELAKDGVTLFGVGELGMANTTPAAAIVSVLTGSDAEDV VGIGANLPLSRVGNKVDVVRRAIAVNQPDRNDGIDVLAKVGGFDLVGMTGVMLGAASCGL PVVLDGFLSYSAALAACQIAPQIKPYLIPSHFSAEKGARTALAHLELDPYLNMGMRLGEG SGAALAMPIIEAACAMYHNMGQLAASNIVLPDGNQA >gi|283548478|gb|GG730299.1| GENE 595 663602 - 664531 859 309 aa, chain + ## HITS:1 COG:erfK KEGG:ns NR:ns ## COG: erfK COG1376 # Protein_GI_number: 16129931 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 303 1 303 310 514 84.0 1e-146 MRRVKLLCSLIMLLASQGAQAVSYPLPPEGSRLVGSPLTITIPPGNTQPLETFAAQYGQG LSNMLEANPGVDVFLPKSGSTLVVPQQLILPDTVREGIVINVAEMRLYYYPPGTNTVEVL PIGIGQAGRETPRNWVTAVERKQEAPSWTPTPNTRREYAARGETLPAFVPAGPDNPMGLY AIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDTVPVGTRVQLIDRPVKYSVE PDGSRWIEVHEPLSRNRSEYESDRKVPLPVTPALRTFINGNEVDVNRGNQALERRSGMPV NISLVQQHY >gi|283548478|gb|GG730299.1| GENE 596 664557 - 665240 246 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 198 1 199 223 99 31 7e-19 MSEIALHLQDVHVAYGNSQQSVLNGFSMSVRKGEIACLLGASGCGKTTVLRAVAGFERLQ RGEIYVSRRRVAGPGIHLPPEKRHVGMVFQEYALFPHLTAQQNVAFGLRRIPREEQQVRV AELLKMVELHSHASRYPHELSGGQQQRIALARALAPHPEILLLDEPFSSLDKRTRERLGN EVRDILRAAGQTALLVTHSEHEAQLMADHIGVVKMGQYQIKKTPHLT >gi|283548478|gb|GG730299.1| GENE 597 665251 - 666939 1696 562 aa, chain - ## HITS:1 COG:AGc717 KEGG:ns NR:ns ## COG: AGc717 COG1178 # Protein_GI_number: 15887757 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 31 555 27 552 558 456 50.0 1e-128 MDSINKPLQFPTLRGLVSGPQSLLTPLHLGALCVALGVLTPVVALIWQASQADLSHWDNL MTYVLPAALKNTVLLLAGVAVMVGVIGVGSAWAMTAWDFPGRKILSWALLLPLAMPTYIV AFAWLDLLHPIGPLQTFIRFLLGFDSPRQFRLPDLRSLSGAIILLGLVLYPYVYLTTRAM FISQPAHLLEAARTLGCSATGTFFRVALPMARPALAVGISLALLETLNDIGASEFLGVQT LTVTVYTTWISRSDLSAAAQIACMMLMFIFLILTLEFYGRRKQGFSSRSLREIQPTRVQG WRGWLLGAVISLPVVLGFLAPVLFLMWESAKRIGDNNLLSPSLLSALQNTLSLAAGTTLV VVCVSMLVAWSARHSAADNAMPGFRRGVMRLASLGYAVPGTILAIGFLTPAMAVDRWLAD LLDVRGLPLMSAGILLVICCAMRFQAIAIGALDSGLGRIPPSLEQASRLLGENGAGTFAR VHLPLLRPAIVSSALLVFADAMKELPTTLLLRPVNFETLATLLYAEAARGTYEEGAIAAL MIVLAGTLPVILLVRHQMTRRG >gi|283548478|gb|GG730299.1| GENE 598 666923 - 667960 1283 345 aa, chain - ## HITS:1 COG:AGc715 KEGG:ns NR:ns ## COG: AGc715 COG1840 # Protein_GI_number: 15887756 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 10 345 19 351 351 430 65.0 1e-120 MNALPRTGLRRITLASALVFSVSLPAFAQETLTLYTTREPGLIQPLLDSWTKTSGIKVST VYIKDGMLERVKAEGKNSPADLLMTVDAGNLIDLVEAGVTQPVESEALKTAIPANLRGAD NQWFALSMRARVLYAEKSLPIDNWHYEQLASPEYKGKVCIRSGQHPYNTALIAAMIAHHG EAKTEEWLRGVKANLARKATGGDRDVARDILGGICDIGLANSYYVGHMKNAKEGSDARQW GDAIKVVKPTFENGGTHVNISGAAVARYAPNKADAVKLMEYLVSAPAQQQYAKANFEYPV LKGVTLDPVISATIGDIDVDKTPLTEIVKYRKQASLLVDKVGFDQ >gi|283548478|gb|GG730299.1| GENE 599 668917 - 673533 4011 1538 aa, chain + ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 1003 1 981 1027 599 44.0 1e-169 MMKSSIKNNNSFFLSLKSKLIIWSQIVLQILFPLFTVFPVHAAPATTTKETTVAMPYSQE LSTLASSTASGTDGAKSAATGMATSAAASSVQQWLSQFGTARVQLNVDDNGNWDDSAVDL LAPLYDNKKAVLFTQLGLRAPDGRTTGNLGMGVRTFYLENWMFGGNVFFDDDFTGKNRRV GFGAEAWTNYLKLSANTYVGTTNWHSSRDFTDYNEKPADGYDIRAEGYLPAYPQLGAKLM YEQYYGDKVALFDTDHLQSNPSAVTTGISYTPVPLVQLAVDYKRGQDSMDDTQFQVNFRY DFGHDWRYQIDPENVKAERSLAGSRYDLVERNNQIVLQYKKKDEQGVSKLTLQTVADNAP ADGLTPNTLQVLATNSSNEPVRNASIAWSTSGDAKLDSLTAVTNAQGIAVVNLTNTSPAT VQVTAKSGNVSAMQDSHFNSVTVSHLILALDKDGSVADGVTPNSAIATVTDINNRPITNG KIVWSVDTPATLKNAQTTTDANGQAHMQYVSTQAGTVTIKASAGDLSATQQGSFVSNAVN AQITEFTVTTNNSPADGATPNKALVTVKDNNGNPVSGASVAVSSDKSTVSFVALKRARTG TASQTDANGQLTVYFTDTVAETTTLTATLDNGNTKNANAVFTANSATAQLQDLTLTRDGS YADGSTANTAEVTVKDVNGNPVTGLNVSWSADKATVKFASAAVTDGTGKAVISFTDTVAE TLTLKAQLDNGNNLTAQSRFVANAGTATLQNLKVTKDGSVANGSDANTAEVYVKDATGNP VVDQDVTWSTDKSGITLTPGGKTDGTGKTTVSYTSLTAQSFQLTARLGNGQNASAASLFV PDTASERISAFTVTTGAVANGTATNTATVTVVDAQNNAVPDADITWSVDGTAKLASTSGK TGPDGSLNVTLTDIKAETVNVKVQLASGSSQTQPSTFVADATTAKIGSYTVTTDALADGI ATNTGTVIVVDANSNPLSGVNVKWSVTGNAKLPDTTGTTGSDGVATVNLSDTTAETVTLT VDTGSESQGLPVRFIPDTNTAVIQTLTLDTTGSLANGSAANKVTATVVDGKGNILPDQAI TWTADKSTVRLTPSGNTGSDGRASVTFTDTVAETVILKAQLANGNNKIQSSQFVADASTA VITDLVVSPDNSRADGIQTNVATATVKDGTGNILANQNVRWTASRSSVVLTPSGITDANG QASVSMMDTEGGTVDVTATLDNTNAMKRTATFLSLNVVSLTSDVDSQKANNGDVITFTAT VKDSAGVAVANTPVTFTTTGSATLSAASVQTDGAGQAVVTLKDGVGESVTVKAVAGINAA DNGQTKPVTFVAAKITGVTAYGQTFAPDSGFPQTGLYGAEFQLVIDDDAANASNYTWSVD SGASGWLFVTSPGVLAMRGTPANSATVTITATPTAGGQPLTYTFTLKHWFTSEGTGSADP ADADTLCQSRGRELPGYSDFSNGAPSSYGTRAVGTMLGEWGNPSQYPFWSHVGDVEGMWT KDTSASTGQRIYVLWNNFVDEKVLTSASGEVDIVCKAF >gi|283548478|gb|GG730299.1| GENE 600 674208 - 674903 154 231 aa, chain - ## HITS:1 COG:no KEGG:Entcl_0627 NR:ns ## KEGG: Entcl_0627 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 231 1 232 232 207 42.0 3e-52 MKTKTQIDDNNVFDHYFSYAVSSKPMKAIEALFLHLLPYGRKILLKKNKCYRLNEEQDGI GLVLITDGLVSAINSDTGHFVSTLYPPSLLGLCHGYSAFYNVPGRIRSTLHAETDVSLFF IPLQRFVDVADKEELWHHVARILAHRIITMVNKEKTYIGMDSYTIIKSIIEEVWLYPENY RTHISLPHFIQKKSGLSRSRIMKILLDLKIGGYINIVKGRLTSVTKLPLSY >gi|283548478|gb|GG730299.1| GENE 601 675182 - 675670 316 162 aa, chain + ## HITS:1 COG:RSp0743 KEGG:ns NR:ns ## COG: RSp0743 COG3516 # Protein_GI_number: 17548964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 3 143 6 150 170 127 48.0 7e-30 MSNTQHKLDKVRPPRVQITYDVEIGDAQAAKELPLVVGVMGDFTQPEDNLRDRKFLNVNK DNFNEIMSSMKPEAEFMVDSVLPGTTGKLAVSLTFNSMDAFSPDNIVQQVEPLKKLMELR EQLSDLRNRAASNELLKLKLGELARQQFPGTDENASQSEDDA >gi|283548478|gb|GG730299.1| GENE 602 675667 - 677148 515 493 aa, chain + ## HITS:1 COG:RSp0744 KEGG:ns NR:ns ## COG: RSp0744 COG3517 # Protein_GI_number: 17548965 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 16 488 18 491 496 535 52.0 1e-152 MSSELMPNVVGTTSLSNELLDQVIDNTQAIRRESDRDRMKAQLNNFLAEVVSGAVTISSD LIGSIEQRITAIDELLSQQVSLIIHSSEFQKRESSWRGLHKLVQSSVTENTQIRLLQCTK QELIKDFKEASDFDQSLLFKSIYESEYGTFGGVPFSAFVGDFQFDNTPQDISLLEQISHV AAAAHAPFLSAIAPGMLSMNDFSELPRPRDLAKMFETTDYARWRSFRQNDDSRYIGLTLP RVLGRLPYGGKTIPAETFAFEEIISENDTGSDYLWVNSAWELAGRIIESFEEYGWCASIR GVEGGGLVKSLPAYNYVSSNGERVMQCPTQIAISDRREKELSELGFIPLVHCKGSDYAAF FAVQSINKPRLYNSDQANANARLSSQLPYILATSRFAHYLKSIVRDKIGSFMSRAECEEY LQKWIMQYVVASDNAGPETKARYPLREAKIDVVEVPGFPGTYRAIAWLKPHFQLEGLSMS LRLVADLPAAAGA >gi|283548478|gb|GG730299.1| GENE 603 677178 - 677660 423 160 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3296 NR:ns ## KEGG: EC55989_3296 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 8 159 14 167 168 88 30.0 9e-17 MAKLKDCQFIEIKIDNKVISGSSEEKKYSKWMEGYVPAGLNTVAGPDGTYFDAIQMSIMV TKETSSLYEQYLKRGYKEIVITTVHRGSDQYDPDYEIQRSVFNNCKIQSLNFEMRDKLFM DLSFIFEGMVEVTFNVPNAAETGLDKVGPIKYDIPEKTLK >gi|283548478|gb|GG730299.1| GENE 604 677709 - 678131 213 140 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_4920 NR:ns ## KEGG: Rahaq_4920 # Name: not_defined # Def: gpW/GP25 family protein # Organism: Rahnella_Y9602 # Pathway: not_defined # 4 136 3 134 138 66 32.0 3e-10 MNPSLLSRLSDNHPLSEEDDYHWSSSGRDVLLQELKMLFNSRSRLPDIEEIEFVNASIIN YGFNESFGQIVEVSARRQELEERLKNTIARFEPRLTQVSLTAIAEPSNSISFRLQAMYLQ EPIALELKWDDYTGRFYFNE >gi|283548478|gb|GG730299.1| GENE 605 678124 - 679923 628 599 aa, chain + ## HITS:1 COG:RSp0747 KEGG:ns NR:ns ## COG: RSp0747 COG3519 # Protein_GI_number: 17548968 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 1 575 1 592 616 268 30.0 2e-71 MNRLLSYYQKELGFLKQHGKIFASRFPKIARRLGIVEGESEDPHISRLIESFALLTSRIH QRLDDDMPEVIEALLSVLAPQFLRPLPSTCIVNIAADPLRSGISGKNILPAGSSLFSRQS TPVACQFRTVYPVNLLPLSLHEAELLFDTDELNWRLRLCFTLWPGARLSDETVRLYLHGP RNAVSTLYTLLCSEVDTLTLRKNGETFMLSADALSPAGFEAEEVLLAHDLRIDPIHILLM DYFYFPQKFSFIDLKLPVGFSAKGGESIEVLIVFQRNSLVGNLERMTGLVDVDFFRLHCT PAVNLFSMRAEPISLSDATAEYPVIPDTRHQAMMDVWAINQVYVQRKTENRIEQIPVAPL LEQQTSPHSGTESGLRWQSFYRKMVGKQHVERKQFIAFSMHKNRPPSASSEIVTLDILCT NHTVPYQMQYGHPDGDFDIEAPVAGLKITALTHPTQPINPPEKSDVRWRFLSQLSLNYQL LDGERGVQRLKDMLALYNFDESPDNIRQFNLIQSIDYQPVTARLIQSDPHSLVRGLELTV AFHQDALHEPDYYLLCSFLDRLLALYAPVNSFTRLTTCIDREMQTRRVWPIRAGKLSWL >gi|283548478|gb|GG730299.1| GENE 606 679914 - 680852 601 312 aa, chain + ## HITS:1 COG:RSp0748 KEGG:ns NR:ns ## COG: RSp0748 COG3520 # Protein_GI_number: 17548969 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 9 302 22 350 363 100 26.0 4e-21 MALMAIVSKYNLHQQIRVLLRKLRDGKAQDATLLDEKLFISSALSLDAPQGEVERLEQSH PDTPITLTTGYNGLTGALGALPTAYTEWMIDRHYRYGDRGAKAFIDIFGHRLYCLDHLAW QKHHLYALAESQAQSPLHTAVLALTGLLDATPSATRMQYTPPFISSAHSMLSLERFLSQK FGVPAQITPFTGGWREVAGYECCQLGGTSSSLANAPMLGRQRIEVSSCFDVIFGPMSVEE SRRFVSMGETVRDIWTSIRRYTGSVMDFSVSLTIDSTDTPVRSLGESALGLNLCLGSHPH QYQVRLADPVFN >gi|283548478|gb|GG730299.1| GENE 607 680863 - 682800 1255 645 aa, chain + ## HITS:1 COG:PA2373 KEGG:ns NR:ns ## COG: PA2373 COG3501 # Protein_GI_number: 15597569 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 77 644 68 667 668 283 32.0 8e-76 MPLIDELKKHQQQHLLCWNGDIANDLLLVALQGREAISSAYRYEIRSLTRMTETQLLRWH GENVSCRMGDGSQQQPQRYLHGVVTRVGFAQRTQDEAECILTLEPALSLLKMGRDMRVWQ NVSVPDLVTTLLSEHGIAQPDRQLHGDYPKREYCIQYRESAFDFIQRLLEEEGIYYFFRH SATEHTLVLADHPASHEPVKGDNLAWHHHGKILTPGAIDRWESTCTLLPGSVSLQGFNTF QAAPVSDEQSASGAEGHVENVSFIDITPQEDRGMVSRQSQRVMNAQEANASCFTGSVNAH WLCCGEVFTFTGHPSGNKPYRIQALNIDAVNNFDDHLSQCQCQIQAMNNEQPWLPPIQHL PPQVPGLLTASVVGPSSEEIHTDELGRIKIQFPWDSENPHDDTSSCWVQVVQPWAGSKFG AQFLPRVGSQVLVSFIQGHPDFPLVTGMVYNGQNKPPFSLPEEKNESGFMTRSSPSGSVD EGHRLSFNDKKGEELLTIVAQKDLSLAVRNNATSTIAANRSTELTKGDDRLTLKQGGLFV TLENGDLQQKIAGDAVTELNNGNYVLSVVGGSGTMKTDKALILESTQSIELKVGSNKISL SSSGISINGMTIAVEASATAELKGAMTTVSGSGMTQVSGGIINIG >gi|283548478|gb|GG730299.1| GENE 608 682810 - 683259 306 149 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3291 NR:ns ## KEGG: EC55989_3291 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 8 140 16 147 155 89 37.0 5e-17 MAQHQSHVQQLLASGEWEAALQQWVQAFPLKVVGIQLAAFMREAMPAAGSALLEAIERGF QQPDDGVRWQVFEQAKKVGFSTPVGALGLSLFWAYGSMTPAEQEPVYPDPALSPRLMYCA LVMLAVQLVEDPVEGATLLFSRCSAGEGA >gi|283548478|gb|GG730299.1| GENE 609 683259 - 683558 160 99 aa, chain + ## HITS:1 COG:all3319 KEGG:ns NR:ns ## COG: all3319 COG4104 # Protein_GI_number: 17230811 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Nostoc sp. PCC 7120 # 1 99 1 99 100 99 68.0 1e-21 MGQPAARVSDMHICPMVTPGVPPVPHVGGPILPPGVPTVLIGGLPAATVGAMATCVGPVD SIVMGSTKVFIANKPAARMGDSCAHGGTIVTGCPTVLIG >gi|283548478|gb|GG730299.1| GENE 610 683565 - 684632 555 355 aa, chain + ## HITS:1 COG:RSp0759 KEGG:ns NR:ns ## COG: RSp0759 COG3515 # Protein_GI_number: 17548980 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 26 349 3 326 337 120 28.0 4e-27 MITLPDFATLLRPITLDNPAGDNLEYDSIFDEIRLARESDPSFLPQDDWAVSDPKKADWG RVCSLSEQALREKSKDLQLACWLVEALAHRHGVPGLIAGIDFLNAFITQFWFHCWPSLED DGLTIRRARLVRLDRDVSQLLFCLPLLEQEISSLAHWKQTQAFEHKISVAPERRDELISQ EGDLTVATFESQASSFSAREIDQQAAQVKTLTAALAQLNAHYLSLSQDPEGELFTHSRQM VKDIADYLQRLAPRVSYQMDEMPLSPPDKYPEEGDVKSVAAQSRMQITDREMAVKQMLAI AHYFRQTEPSSPVPFLMERAARWANMTLTEWLEEMLNDSSSMRDINLVLTGQLSQ >gi|283548478|gb|GG730299.1| GENE 611 684629 - 685258 581 209 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_4927 NR:ns ## KEGG: Rahaq_4927 # Name: not_defined # Def: type VI secretion lipoprotein, VC_A0113 family # Organism: Rahnella_Y9602 # Pathway: not_defined # 8 180 9 179 191 203 54.0 4e-51 MRRLFSFALLLGAMLLSGCTSDSAMTATKEQAMKQAPAPFAQGAISLDIQTDPDLNAWHD VANSCTVLLVQAQKSSTLDKLLSNPFALKGLFSAAGAQDDILKVDRYAAMPGQRTTLHID RSENTRYIAIVAGYYPFPKKQHMAVVAIPVNSESHGWWNPVWQAHLAPLSLQLRLGREAI TQIQGAPQLPVSLSQHDVAASAAPSDRGE >gi|283548478|gb|GG730299.1| GENE 612 685262 - 686626 509 454 aa, chain + ## HITS:1 COG:RSp0740 KEGG:ns NR:ns ## COG: RSp0740 COG3522 # Protein_GI_number: 17548961 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 7 451 6 446 448 102 22.0 1e-21 MYPELQQIYWYSGVYLQPQHMQSLDLHHSYMLSRARQLAQPWNVGLIHCDFNPDTLVDFS LKIERLQAILPSGDYLEYPGNSMLQPRQLRGFWKQLEKPFTLWLALRRFDPAHVNVGDSP NSRWLTPHEPGVMKDVYFTGPECSVSRILYNVQILSDEEKDGIVDCELLPLMRLRYDNDR VMVDPTFCPPIVTLNGGTALKSLLDSVCAELANRARQFAEYKRPEQVKSANRNDITQTLA MRSLNRALPLLQHYCQTPTMHPWPIYGLLAQLIGELSSFSEQCSFDGVWVGEDLALLPYD HFDLYACFASASRVLTALLNILMLEDNTWIVLKPDERRIFCGNLQSLPWQKAEKIMLLLR SETLATAENIDGMGFKIAPASMISPLIQHALPGISATLLRPAPRGVPHRKDAFYFLLNLR DDLWKSVEQQQDIAFYWDDAPMDLQVQVIAMGEA >gi|283548478|gb|GG730299.1| GENE 613 686626 - 687243 288 205 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_4929 NR:ns ## KEGG: Rahaq_4929 # Name: not_defined # Def: type IV / VI secretion system, DotU # Organism: Rahnella_Y9602 # Pathway: Bacterial secretion system [PATH:rah03070] # 1 159 2 157 208 114 40.0 2e-24 MELLDSYLPVFKKALHIVDNPSEFSGYAESRLLCIKTLEQARSEANQCDVEEEEKAAAYF AVIAWLDELMLCSELPWRQQWQGERLQRKYLNTTLAGAHFFQRLTALDVGHQQARKVFLF CLQNGFHGQYGTVDDRSDLLALIEEQRKQCLQENWWAWPCDTPVASGIPDKKIAITRHKS LLPVVISGALFLYGALFFLFRYYVM >gi|283548478|gb|GG730299.1| GENE 614 687249 - 690674 1363 1141 aa, chain + ## HITS:1 COG:AGl1062 KEGG:ns NR:ns ## COG: AGl1062 COG3523 # Protein_GI_number: 15890651 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 358 30 404 1159 97 23.0 1e-19 MLKKLAYFTGWLVVLCLSLLFCFTLGLWQNWRTSSILLLWLLMLLLAVLLWALFLACLQL FRSRKERRWLAKYRLSRREYVLLKHWKTGASVIKRIQRKRHQLPWFLLIGEQSGKSTLLG SSGLPLFYGEMDDAVPGPTRTLRWWFFRRMGILDLSSNFLVGGAAFRQGWERIAHWCTKM PMPAGIIITLSVSELLNDESNTLHAMARKVRALIEPLIQHFGEQLPLHIIVTQCDRFPGF SLWQGQLSDAQRQQTLGYSWNIPPHIDGEDPHTLQPLFSALKEGLSSVRLSMGRPSHLSA QDYSLLLDFPENVARLEPPLRLFLASLCEPNAYFSHTSLSGVWFTATEPQANNRARRTSV FAHHLLTEGLCMLSQHRIRPRWYHRPKGKVFIAVLLAVCVGWLGISAMQTANRLQHDITH MSPTALAAFLEQDEQLPTASLMTFPFSPILRQQQTLAGARLARIVATPRPLPQTFQAYQQ RVLAASLEQQREYILQLANALLVWQEMRDHAILSVLQQRPAIVGELQQYRYPATASPLTR LALERYHMQSPEGEQWLQTARELLINLVNRAPSLEWLLSPSPQMPALHASTYWPSLSQDN TLSGGWTRKGEAMLAVWMAQIERAAGGVQPVFERAREQRFARKQDAWSQFLSNVSATLSK ASLPVLTHNQLIALSEGQSQAMQFANRAIEELDDVPSSQAQPWLTTLRSLQRLTLTSGRT PLMNKAQQIDSRFRHSLAAWLRAQPVAASVDNEQPVQQAWLQWQNARNEAVNDAMAQGPR SDRLTRGMFMIPAEGGEQNPLLKLTPALIRLKEHLSGTVTDTGSAAVWSLYEEDTHRLLA YAMMQSACWLNEQWKSQVIWPLGKDEEQRSYEEQQALSQKSVAEFLRGPAKAMLSATRHG LDAATYASMSVPLTTDFLLLARQVMTPDMLQDVPQRGSTLDADKRAMLQAKADGLTLQLA ELAKQKWKIQLSSMPATVPEGARVIPTGTQLTLHCQKGDQQLISMNFADQSGFVWQPGEC SGVTLSVLFPDFTVRYQLSGDDAWPAFIRRFPDGEAQLSSDEFGDDTALLNQLGIKHLLV RFKVSDPQPIEDAWQRWHDLTEQIAGLTDQITTIDERIKQRATDSLSEPISGLPDDIAQC H >gi|283548478|gb|GG730299.1| GENE 615 690693 - 693203 1207 836 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 8 814 2 789 815 469 34 1e-130 MNTHLKPIISKLTPEGRAAIDAAISLAVEQKHTEVAPAHLLMALLRQEGALFESLALQTG LSVDQLVDAVSHALMQTEVRQSNSPVFAKNLVEWLVNSWLLASASWGQSTLGPAAIFASL LEKDVTGIPHIQQVLHCDRQKAYAVLQACGGSVSRTGFDAMAETSVLEKYTRNLSELARR GELDPVLGREQEIRQMIDILLRRRQNNPILTGEPGVGKTALVEGLALRIAEGSVPPVLQS MELLTLDLGLLLAGASVKGEFENRLNLLLKALSHMPTPTILFIDEVHTLIGAGGQAGQSD AANLLKPALARGELRVIGATTWAEYKKYFEKDAALTRRFQVVKVAEPDIDNAMVMLRAVA PALSRHHNIPVLESAVGAAVNLSSRYIAGRQLPDKSVSLLDTACARVAVSQVHEPRELEA ITVQLRAIYSECNALRSEDSSPERQVHLIKQAADLQIRHDTLHEEWQCQRNLVHRLLNSQ DAKEIALARHELAVRHQKHAMVFERVDATCVADVVADWTGIPLGRMLEQEQQRQDALFDR LSERIIGQQHALTYISQQIRISRSGLGDPLKPTGVYLLAGPSGTGKTETSLALAELLFGG EHNLVTINMSEYQEAHTVSGLKGSPPGYVGYGQGGVLTEAVRRNPYSVILLDEVEKAHPD VMELFYQVFDKGVIEDAEGQVINFRNTLIIMTSNLASELLINAWASGERAVDAIANVIRP EFERVFSPALMGRMTLIPYLPLTSDVMAKIIMLKLQRLNERYQRVTAGRVSLVWSKGVIN WVAQHCQRQQSGARDIDHVLQEHILPLLAARVLQTPTAGKIKISINNHTPCLKNEN >gi|283548478|gb|GG730299.1| GENE 616 693292 - 694050 89 252 aa, chain + ## HITS:1 COG:no KEGG:PSPPH_3978 NR:ns ## KEGG: PSPPH_3978 # Name: not_defined # Def: hypothetical protein # Organism: P.syringae_phaseolicola # Pathway: not_defined # 37 237 684 870 887 108 33.0 2e-22 MKKTCGYSKDKFPGTSNIMTTRRYPSLNLGFNVDNIAWELGSSFLLFTAGQNKGQDLLIT SHGGYYPFGSDFIIPPRVVLSVLGPHKHSLIDPKIHNMVKPSLMPYAEVSDQGIQLGVVN RHQSPWGRPKEHPFQYHVQTDKSITGTYKAGRFRNYTLCKFEDDTELDYDGIRRFINSNH FGISIGDASRYTMRKMDVLSVRHRPLKMDPTLKDAITALIKNDIYYERIILCFCRSSVSP FASFKEDYYAMI >gi|283548478|gb|GG730299.1| GENE 617 694250 - 694777 345 175 aa, chain + ## HITS:1 COG:ECs4670 KEGG:ns NR:ns ## COG: ECs4670 COG3539 # Protein_GI_number: 15833924 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 8 174 6 198 200 87 32.0 1e-17 MEKRILAVATAAVLFSALSCGIANAADGQIKFTGSLTADACKVDTTSADQTVSMGKVAIS AFTDGQGTKASPTKFSLKLTDCPDTVTSAVVKFDGNADASNTDLLALDSDSDAAGVGIEI ADNTGAAIPIHQASTAYPLAVGDNTLEFVARYVSDTATVTAGAANATSDFTINYN >gi|283548478|gb|GG730299.1| GENE 618 695156 - 695563 152 135 aa, chain + ## HITS:1 COG:Z4969 KEGG:ns NR:ns ## COG: Z4969 COG3121 # Protein_GI_number: 15804091 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli O157:H7 EDL933 # 1 131 99 228 232 110 45.0 9e-25 MPKDRESVFWLNVKSIPAQSKNADGSVTRNTLQISVKTRIKLFYRPEGITETTKEAAERL SFKRTAKQLIVTNPTPYYFTFNTLKVGQKDVDSLSTMVPPKGEMQYTLNGTGNNVEWNYI NDFGGVSKMVTSPLK >gi|283548478|gb|GG730299.1| GENE 619 695662 - 698220 567 852 aa, chain + ## HITS:1 COG:STM3638 KEGG:ns NR:ns ## COG: STM3638 COG3188 # Protein_GI_number: 16766924 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 4 841 15 834 842 648 43.0 0 MKNFTYNRLAITLLYFFGNVSFAQDVFNLKALELDNPGMIPADLSQFSVPGGQLPGIYHV DILINGEKKDTRDVKFIKEPSGDITPELTIEQLSEYGVKIDSIKSLSQFDKNKIIAPLNS YISDSTIKFDFPNQMLKITIPQSQMETSARGYIPPQLWDEGIPALLASYDFTGSNTNLKH GGGGSDNYFLNLHSGLNAGAWRIRNYSTWNYNKDEKAATESKWDSINTWAQRDIKNIKGQ LVIGDTFTSSDIFDSVQFKGIQLISDDNMLPDSQRGFAPVIRGIANSNARVTVKQNNSVI YQSYVPPGAFVIDDLYPTSAGGDLNVTITESDGSERNFTQAFSNVPVMQRMGRLKYAYTV GKYRSSYDNGNEPDFGQITMLYGLSNRFTLYGGSQYSEQYQSFSFGVGTNLEVLGSISID VTNASADLENNENDSHKEGQSYRFQYMKNFDETDSTLSLAGYRYSTSGYYSFADVNDLNS DIYSGKTDDDAQYQRSHNKKNKIQLNFTQEILDGEWGSFSVNGYQQSYWQTDGYERNLTL GYNNSISDISFGINYTYSDTPYSDSADQQLAFNMSIPFSHWMPRSNTYVNYNSTSSRHGD TVQQLGLSGTALAGDNLSYSAMQGYNNQSRETNGQLSANYKGSYGNINTGYNYDHDSRQI NYGLQGSIVAHQYGVTLSQPVSGDMTAIALVRAPGAKNVNVINNTGVATDWRGYTIVPYV NSYRRTNIRLDTESFANDTDIDNTVYSIVPTAGAVVVADYKTHTGNRALFTVKRSDGSFV PFGATVTLSGDDRESIVNDDGQVYLTGLKETGTIHIAWGKGDANSCLSEYDLSNGYHDGG VDTLTLQCSSHN >gi|283548478|gb|GG730299.1| GENE 620 698517 - 698738 99 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832640|ref|ZP_06352381.1| ## NR: gi|283832640|ref|ZP_06352381.1| S-fimbrial adhesin protein SfaS [Citrobacter youngae ATCC 29220] S-fimbrial adhesin protein SfaS [Citrobacter youngae ATCC 29220] # 1 73 97 169 169 124 100.0 3e-27 MTLYKSTGDAENIAVQLQDQNTQSVLSNGTVDTVNVISTGNAVFNLQARAKTPLGGVTAG TIESLIEMTFSYN >gi|283548478|gb|GG730299.1| GENE 621 698746 - 699258 152 170 aa, chain + ## HITS:1 COG:fimF KEGG:ns NR:ns ## COG: fimF COG3539 # Protein_GI_number: 16132139 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 4 170 6 176 176 90 34.0 1e-18 MNKFILFCFYMILALNCFADQVSTITVTGNVHVAACRVDPSSQNVPVDLGKHSIYQLKNI GDSTDPVTFSIDLEDCPETTNSALIKLDGFSDTDNNQLIKLDDMPDSASGVGVAVYDNTG TIVPLWMPSAAYQLQKGSNLLTFTAKYVVSKLPVTNGIADATVSFTLNYQ >gi|283548478|gb|GG730299.1| GENE 622 699400 - 700233 49 277 aa, chain + ## HITS:1 COG:no KEGG:KP1_0601 NR:ns ## KEGG: KP1_0601 # Name: not_defined # Def: putative fimbrial adhesin precursor # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 2 277 42 317 317 90 32.0 9e-17 MGTINVDPTLKVGDVIASTTYDGMDQAIQTTFGAWYIYFKYSTKTPGTYHAIATNLDGVG VRMSQARISGSYYPYTYKGSCAGLISCTGATPSDLALQKIELIKTADVTESGDLSDGVFA YAQCDNGQTYTNFSFGNSHIISSTCSLDTNLTNVKLGDYKTTDFSGVGSTTETKLVSIPV TCTGAGAAFSLAVSSVNVADNSNGVIALDSGGASGIGVQLLQSDGITPAPLEGTSWSAGT AATGGNSINLYARYYQLADTVTSGNADANVTLTFNYK >gi|283548478|gb|GG730299.1| GENE 623 700509 - 701975 955 488 aa, chain - ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 6 485 5 484 489 680 68.0 0 MKISLLTSVISLLCMGQAMACTTILVGSQATDDGSFIVARNEDYSATNAKHMIIHPSAHH QQGSFKSSVNDFTWPLVKDALGYTAIHDFDTHEKSMGEVGYNSAGVGISATETIYNGKAV LKVDPYVEKTGITEDAIPTVILPQVHSAREGVELLGRIIEQKGAGEGFGVAFVDAKEIWY LESGSGHQWMATRLPADNYFVTANQGRLRHYDPKDQENYLASPTLVSFAESHGLYNSKDG IFDFHKAYSQDVENDITYNYPRVWTLQHMFTPALKTKVDEGKQFPVFLKSANKLSVNDVK KALRNHYQETPHDPYNNNNPQESWRPISVFRTQESHILQVRPNMPKAIGEVEYVAYGMSA LGVYVPYYQGITHYLPGYAKGTDEASDDSVSWTYRTLQTLAMQNYSAYAPDIQNAYAKFE QQTSLQQEKMEKEYLKIYQHEPHKAQQLLQNFEDKTMQDALNLTKQLTSQIITKMTHDTD LKYHFEGA >gi|283548478|gb|GG730299.1| GENE 624 702965 - 703762 601 265 aa, chain - ## HITS:1 COG:STM2001 KEGG:ns NR:ns ## COG: STM2001 COG3228 # Protein_GI_number: 16765336 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 265 1 265 265 473 88.0 1e-133 MIKWPWKEQETARNDDWPWDNALAIPLLVNLTEQEQARLIALAERFLQHKRLVALQGFEL DPLKSARIALLFCLPVLELGIEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRVVQSGQ SWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGDRASGIPAIPLRDIAGWEHDL HAAMNNIQDEIDLVGETACSIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFIQ FYRQNPMQRLRDNSEDGNYRSPNVH >gi|283548478|gb|GG730299.1| GENE 625 704115 - 705290 1370 391 aa, chain - ## HITS:1 COG:STM1995 KEGG:ns NR:ns ## COG: STM1995 COG3203 # Protein_GI_number: 16765331 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Salmonella typhimurium LT2 # 1 391 1 398 398 530 83.0 1e-150 MKRKVLALLLPALLAAGAANAAEIYNKNGNKLDLYGKVDGLRYFSDNPGDDGDQTYARLG FKGETQINEMLTGYGQWEYNIQANGTEGEGANSWTRLAFAGLGFGQNGTFDYGRNYGVVY DVEAWTDMLPEFGGDTYTQTDVYMTGRTNGVATYRNKGFFGQVDGLNFALQYQGNNEDGG SGEGTGNGDGRRLSRENGDGFGMSTSYDFDFGLSLGAAYSSSDRTNNQVAKGRNDHSYAN KYAGGETADAWTVGAKYDANNVYLAAMYAETRNMTAYGKGDGVEGGIANKTQNFEVVAQY QFDFGLRPSVAFLQSKGVDLGGWDHHSNGTPRYTDKDLVKYVDVGVTYYFNKNMSTYVDY KINLLDEDDSFYESNGIATDDIVAVGLVYQF >gi|283548478|gb|GG730299.1| GENE 626 705731 - 706423 537 230 aa, chain + ## HITS:1 COG:STM1993 KEGG:ns NR:ns ## COG: STM1993 COG1418 # Protein_GI_number: 16765329 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Salmonella typhimurium LT2 # 1 227 1 227 231 334 74.0 7e-92 MERQNWQLKFEAWLRDNHSGQDSAHDVFHFRRVWKTAQNLSTDATIDWLVVLTACYFHDL VSLPKNHPDRHRSSVLAAQETRRILMRDFPDFPQRCLPAVCHAIEAHSFSAKIAPETIEA KIVQDADRLEALGAIGLARVFAVSGALGVALFDAEDPFARRRRLDDKRYALDHFQTKLLT LPLTMQTEQGRRLAQHNADFLLTYMAKLSSELKGEYEMLDLDAIQPFKAR >gi|283548478|gb|GG730299.1| GENE 627 706500 - 707930 926 476 aa, chain + ## HITS:1 COG:STM1992 KEGG:ns NR:ns ## COG: STM1992 COG0270 # Protein_GI_number: 16765328 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Salmonella typhimurium LT2 # 1 476 1 476 476 832 84.0 0 MQDNFSVAGSMNPMTDDNEAAAQVILAKLLEIYDVKTLVAHLNGVGENRWSPAIFKRVVA NETWHRLSDNERAHLNSLLPTPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEW NKHAVRTYKANNYCDPLQHRFNEDIRDITLSHHDGVSDQQAAEHIRQHVPEHDVLLAGFP CQPFSLAGVSKKNALGRAHGFACDTQGTLFFDVVRIIDARRPAIFVLENVKNLKSHDQGK TFRIIMQTLDELGYDVADAHDNGPDDPKIIDGQHFLPQHRERIVLVGFRRDLQLKSDFTL RNIATCYPRRRTTLADLLEPTVEAKYVLTPVLWKYLYRYAKKHQARGNGFGYGMVYPGNP DCVTRTLSARYYKDGAEILVDRGWDMALGEKDFDDPSNQQHRPRRLTPRECARLMGFESP QGYQFRIPVSDTQAYRQFGNSVVVPAFAAVARLLEPKIKQAVAIREKENLHGRRSR >gi|283548478|gb|GG730299.1| GENE 628 707911 - 708378 396 155 aa, chain + ## HITS:1 COG:ECs2698 KEGG:ns NR:ns ## COG: ECs2698 COG3727 # Protein_GI_number: 15831952 # Func_class: L Replication, recombination and repair # Function: DNA G:T-mismatch repair endonuclease # Organism: Escherichia coli O157:H7 # 1 155 1 155 156 277 85.0 5e-75 MADVHDKATRSKNMRAIATRDTAIEKRLASVMTEQGVTFRVQDATLPGRPDFVVDDYRCV IFTHGCFWHHHNCYLFKVPATRTAFWLEKIGKNVQRDARDCEKLQALGWRVLIVWECALR GREKLDDEALSERVIEWICGGGATAQIDTLGIHLL >gi|283548478|gb|GG730299.1| GENE 629 708370 - 709290 958 306 aa, chain - ## HITS:1 COG:STM1990 KEGG:ns NR:ns ## COG: STM1990 COG0697 # Protein_GI_number: 16765326 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 306 1 306 306 429 86.0 1e-120 MRFRQLLPLFSALFALYIIWGSTYFVIRIGVESWPPLMMAGVRFLSAGILLTTFLLIRGH KLPPLRVLLNAALIGILLLAVGNGLVTVAEHQNVPSGIAAVVVATVPLFTLCFSHFFGIK TRKLEWMGIAIGLAGIIMLNSGGNLSGNPWGAVLILIGSMSWAFGSVYGSRITLPVGMMA GAIEMLAAGLVLMCASLLSGEKLTTMPTFSGFMAVAYLALFGSIIAINAYMYLIRNVSPA LATSYAYVNPVVAVLLGTGLGGESLALIEWLALGVIVFAVVLVTLGKYLFPLKADAVVAP SEKTLQ >gi|283548478|gb|GG730299.1| GENE 630 709235 - 709390 59 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMYSAKSALKSGNNCLKRIIPHGGNKKVQHSKRQNYRAGEIYNYLPLLNIC >gi|283548478|gb|GG730299.1| GENE 631 709469 - 710380 886 303 aa, chain + ## HITS:1 COG:STM1989 KEGG:ns NR:ns ## COG: STM1989 COG2354 # Protein_GI_number: 16765325 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 303 1 303 303 461 85.0 1e-129 MAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQQVSGVRANRELPVVWN VAKGSLVNKVILVPLALLISAFIPWAITPLLMVGGAFLCFEGVEKVLHTLQARKHQETPE ERQQRLASLAAQDPLTFEKDKIKGAIRTDFILSAEIVAITLGIVADAPLLNQVLVLSGIA LVVTVGVYGQVGIIVKLDDIGYWLAEKRSALAQSLGKGLLVVAPWLMKSLSVVGTLAMFL VGGGIVVHGISPLHHAIEHFAQQQSSLIALMLPTLLNLVLGFIIGGIVVLLVKTVARLRG VSH >gi|283548478|gb|GG730299.1| GENE 632 710458 - 710640 217 60 aa, chain + ## HITS:1 COG:STM1988 KEGG:ns NR:ns ## COG: STM1988 COG5475 # Protein_GI_number: 16765324 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Salmonella typhimurium LT2 # 1 60 21 80 81 94 80.0 5e-20 MVFSVSEEVTSKEGGPRMIVTGYASGMVECRWYDGFGVKREAFREDELVSGEQRSLCQDA >gi|283548478|gb|GG730299.1| GENE 633 710846 - 711073 308 75 aa, chain - ## HITS:1 COG:no KEGG:CKO_00990 NR:ns ## KEGG: CKO_00990 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 75 22 96 96 123 90.0 2e-27 MKTAKEYSDTAKREVSVDVDALLKAINEICESEIHRSQDDPERVSIDGRDYHTWHELADA FELDIHDFSVSEINR >gi|283548478|gb|GG730299.1| GENE 634 711236 - 711424 299 62 aa, chain + ## HITS:1 COG:no KEGG:SG1072 NR:ns ## KEGG: SG1072 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 62 1 62 64 122 96.0 6e-27 MKVNDRVTVKTDGGPRRPGVVLAIEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVEK ME >gi|283548478|gb|GG730299.1| GENE 635 711479 - 712102 323 207 aa, chain - ## HITS:1 COG:STM1982 KEGG:ns NR:ns ## COG: STM1982 COG2771 # Protein_GI_number: 16765320 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 353 89.0 1e-97 MSTIIMDLCSYTRLGLTGYLVSRGVKKREINNISSVDELSLACVSLQPAVVFINEDCFIH DPANSQQIKQIINQHPSTLFIVFMAIANVHFDEYLLVRKNLLISSKSIKPDSLDELLGDI LKKEVDIAINVNLPTLSLSRTESSMLRMWMEGQGTIQISDQMNIKAKTVSSHKGNIKRKI KTHNKQVIYHVVRLTDNVTNGIFVNMR >gi|283548478|gb|GG730299.1| GENE 636 712390 - 713175 822 261 aa, chain - ## HITS:1 COG:STM1981 KEGG:ns NR:ns ## COG: STM1981 COG1684 # Protein_GI_number: 16765319 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Salmonella typhimurium LT2 # 1 259 1 259 264 349 88.0 3e-96 MLQVTSVEWMQWLNLYFWPLLRILALISTAPILSERAIPKRVKLGLGVIITIVIAPSIPP ADVPIFSIGALWQAMQQILIGIALGFTMQFAFAAVRTAGELIGLQMGLSFATFFDPGSRL NMPVLARLIDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGGNPVNSNAFLALARAGSLIF INGLMLALPVMTLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC ERLFSEIFNLLADIVSEMPGK >gi|283548478|gb|GG730299.1| GENE 637 713184 - 713453 293 89 aa, chain - ## HITS:1 COG:STM1980 KEGG:ns NR:ns ## COG: STM1980 COG1987 # Protein_GI_number: 16765318 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Salmonella typhimurium LT2 # 1 89 1 89 89 101 98.0 4e-22 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIVAVFI AIIVAGPWMLNLLLDYVRTLFSNLPYIIG >gi|283548478|gb|GG730299.1| GENE 638 713463 - 714200 740 245 aa, chain - ## HITS:1 COG:STM1979 KEGG:ns NR:ns ## COG: STM1979 COG1338 # Protein_GI_number: 16765317 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 373 94.0 1e-103 MRRLLSITLAGLWLFSPVALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK ISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELK TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA QSFYS >gi|283548478|gb|GG730299.1| GENE 639 714200 - 714574 415 124 aa, chain - ## HITS:1 COG:STM1978 KEGG:ns NR:ns ## COG: STM1978 COG3190 # Protein_GI_number: 16765316 # Func_class: N Cell motility # Function: Flagellar biogenesis protein # Organism: Salmonella typhimurium LT2 # 1 123 2 124 125 155 78.0 2e-38 MNTQATVSQPAAVPGSPLVQVSGALLGIIVLILAAAWVIKRLGFAPKSTGTRGLKVAAST SLGPRERVVIVEVEDARLVLGVTASQINVLHTLPPAPADAEEKPASPADFQAMMKSLLKR PGRP >gi|283548478|gb|GG730299.1| GENE 640 714577 - 714990 665 137 aa, chain - ## HITS:1 COG:STM1977 KEGG:ns NR:ns ## COG: STM1977 COG1886 # Protein_GI_number: 16765315 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Salmonella typhimurium LT2 # 1 137 1 137 137 239 98.0 1e-63 MSDMNNPSDENTGALDDLWADALNEQKTTTTKSAADAVFQQLGGGDVSGALQDIDLIMDI PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV RITDIITPSERMRRLSR >gi|283548478|gb|GG730299.1| GENE 641 714987 - 715991 1016 334 aa, chain - ## HITS:1 COG:STM1976 KEGG:ns NR:ns ## COG: STM1976 COG1868 # Protein_GI_number: 16765314 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 632 97.0 0 MGDSILSQAEIDALLNGDSETKDEPISGIAKESDIRPYDPNTQRRVVRERLQALEIINER FARQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSP SLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYV RSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSR NEDQNWRNNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVP VLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK >gi|283548478|gb|GG730299.1| GENE 642 715996 - 716463 391 155 aa, chain - ## HITS:1 COG:STM1975 KEGG:ns NR:ns ## COG: STM1975 COG1580 # Protein_GI_number: 16765313 # Func_class: N Cell motility # Function: Flagellar basal body-associated protein # Organism: Salmonella typhimurium LT2 # 1 155 1 155 155 233 90.0 1e-61 MTDSAINKKSKRAIWIPLLVLITLAACATAGYSYWRMQQQPSASVKAEPAPPPAPVFFAL DTFTVNLGDADRVLYIGITLRMKDEATRARLNEYLPEVRSRLLLLFSRQNAATLATEEGK QQLIADIKETLATPLVVGQPKQVVTDVLYTAFILR >gi|283548478|gb|GG730299.1| GENE 643 716568 - 717782 1229 404 aa, chain - ## HITS:1 COG:STM1974 KEGG:ns NR:ns ## COG: STM1974 COG3144 # Protein_GI_number: 16765312 # Func_class: N Cell motility # Function: Flagellar hook-length control protein # Organism: Salmonella typhimurium LT2 # 1 404 1 405 405 319 65.0 7e-87 MITLPQLITTDTDVAAGLQSGKAVDSPEDFLALLAGALGAGDAQGKGAPLSLANLQAASS KLQKGLLQKNGESTQSLKLTDLLAQKELQTEASLADMTDAQQLLSALTPSLKVNALTTLG KVAQQDEKTTALSDDDLANLSALFAMLPGQPLATPAVDSTPTAVDATLSALSRGSAHGAI ADNAGELLPGDAKKGKADIASAGGSLDQTNNPTLTPLTAAAATRAEIDSAPSPTSIGVTA APLSGPQTHAQPLPTAAPVLSAPLGSQEWQQSLGQHVTLFTRQGQQSAELRLHPQDLGQV HISIKLDDNLAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSNISSESFAGHQQS SGQQQQAGRAQGPDIFAAEDDAILATPASLQAAARGDGAVDIFA >gi|283548478|gb|GG730299.1| GENE 644 717779 - 718222 486 147 aa, chain - ## HITS:1 COG:fliJ KEGG:ns NR:ns ## COG: fliJ COG2882 # Protein_GI_number: 16129889 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis chaperone # Organism: Escherichia coli K12 # 1 147 1 147 147 193 91.0 1e-49 MAQHGALATLKDLAEKEVDDAAVLLGEMRRGCQQAEEQLKMLIDYQHEYRNNLNNDMGQG ITSNRWINYQQFIQTLEKAIEQHRQQLNQWTQKVDQALNSWRDKKQRLQAWQTLQDRQTS AALLAENRLDQKKMDEFAQRAAMRKPE >gi|283548478|gb|GG730299.1| GENE 645 718244 - 719614 1554 456 aa, chain - ## HITS:1 COG:STM1972 KEGG:ns NR:ns ## COG: STM1972 COG1157 # Protein_GI_number: 16765310 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Salmonella typhimurium LT2 # 1 456 1 456 456 825 94.0 0 MTTRLTRWLNTLDSFEEKMSLLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQDGN ETQEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNIAGEGLQSGKQLPLGPALLGRV LDGSGKPLDGLPAPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGL FAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPAD VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPS VFAKLPALVERAGNGIHGGGSVTAFYTVLTEGDDQQDPIADSARAILDGHIVLSRHLAEA GHYPAIDIEASISRAMTALISEQHYARVRNFKQLLSSFQRNRDLVSVGAYAKGSDPMLDK AIALWPQLEAFLQQGIFERADWEDSLQALELIFPGV >gi|283548478|gb|GG730299.1| GENE 646 719614 - 720321 896 235 aa, chain - ## HITS:1 COG:STM1971 KEGG:ns NR:ns ## COG: STM1971 COG1317 # Protein_GI_number: 16765309 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Salmonella typhimurium LT2 # 1 235 1 235 235 330 87.0 1e-90 MSNELPWKVWTPDDLAPPMAEFVLADRSETPLAEESSEPELSAEQQLEQQLAQLQMQAHE QGYNAGLAEGRQKGHEQGYQEGLNQGLEQGQNQARAQHAPIAARMQQLVSEFQNTLDALD SVIASRLMQMALEAARQVIGQTPVVDNAALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV EEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDASVATRWQELCRLAAPGVV >gi|283548478|gb|GG730299.1| GENE 647 720314 - 721312 1321 332 aa, chain - ## HITS:1 COG:STM1970 KEGG:ns NR:ns ## COG: STM1970 COG1536 # Protein_GI_number: 16765308 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Salmonella typhimurium LT2 # 1 332 1 331 331 542 98.0 1e-154 MSNALTGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANVRQISNKQLTEVLAEF EQEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRDTTSGIETLNFMEPQSAA DLIRDEHPQIIATILVHLKRGQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVL NGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL VDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLS QVENEQKAILLIVRRLAETGEMVIGSGEDTYV >gi|283548478|gb|GG730299.1| GENE 648 721305 - 722978 1587 557 aa, chain - ## HITS:1 COG:STM1969 KEGG:ns NR:ns ## COG: STM1969 COG1766 # Protein_GI_number: 16765307 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Salmonella typhimurium LT2 # 1 557 1 560 560 892 88.0 0 MSATASTATQLKPLEWLNRLRANPRIPLIVAGAAAVAIVVAMVLWAKAPDYRTLFSNLSD QDGGAIVTQLTQMNVPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK FGISQFSEQVNYQRALEGELARTIETLGPVKRARVHLALPKPSLFVREQKAPSASVTVNL EPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQAGHLLTQSNTSSRDLNDAQLKYASD VEGRIQRRIESILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDDSQAVLRSRQLNV SEQIGSGAPGGVPGALSNQPAPANTAPIATPPANQQNAQTTQTTNNSSNAGPRSTQRNET SNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLTAEQMKQIEDLTREAMGFS DKRGDTLNVVNSPFTATDDSMGELPLWKQPFFIDQLMSAGRWLLVLLVAWILWRKAVRPQ LLRRSEEAKAAQEQTRIRQETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQRIREMSDND PRVVALVIRQWMSNDHE >gi|283548478|gb|GG730299.1| GENE 649 723195 - 723509 360 104 aa, chain + ## HITS:1 COG:ECs2676 KEGG:ns NR:ns ## COG: ECs2676 COG1677 # Protein_GI_number: 15831930 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Escherichia coli O157:H7 # 1 104 1 104 104 134 88.0 5e-32 MSAIQGIEGVIGQLQATAMSAKMQDVQPQPTVSFAGQLHAALDRISDVQTASRVQAEKFT LGEPGIALNDVMTDMQKASVSMQMGIQVRNKLVSAYQEVMSMQV >gi|283548478|gb|GG730299.1| GENE 650 723563 - 723796 315 77 aa, chain - ## HITS:1 COG:ECs2669 KEGG:ns NR:ns ## COG: ECs2669 COG0425 # Protein_GI_number: 15831923 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 77 1 77 77 144 98.0 5e-35 MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLEKGEILEVVSDCPQSINNIPLDARNHGYT VLDIQQDGPTIRYLIQK >gi|283548478|gb|GG730299.1| GENE 651 723793 - 724998 1428 401 aa, chain - ## HITS:1 COG:STM1965 KEGG:ns NR:ns ## COG: STM1965 COG2391 # Protein_GI_number: 16765303 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Salmonella typhimurium LT2 # 1 401 21 421 421 710 96.0 0 MSWQHFKQAWLIKFWAPAPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQVLQLFGVHA ELWGYYKLIHLDGSPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIMQAVVGGL IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAIGSWFGARFTLLPMFRIPVKMQKV SAASPLTQKPDQARRRFRLGMLVFIAMIGWALLTAMDKPKLGLAMLFGVGFGLLIERAQI CFTSAFRDLWISGRTHMAKAIIFGMAVSAIGIFSYVQLGVEPKIMWAGPNAVIGGLLFGF GIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATSWDKVNLLNT FGPLGGLLVTYLLLFTALMLIIGWEKRFFRRAGLTPAKESV >gi|283548478|gb|GG730299.1| GENE 652 725184 - 725597 528 137 aa, chain + ## HITS:1 COG:no KEGG:CKO_01010 NR:ns ## KEGG: CKO_01010 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 137 2 138 138 246 90.0 1e-64 MKKLAIVGAFLVLSGCAEVENYNDVVKTPAPAGLAGYWQSKGPQRSLVSPEAIASLVVTK EGDTLDCRQWQRVIALPGKLTMLSGDLTNVTVKRELYEIEREGNTLEYDGMTLQRVDRPT PECADALKKTPLATPLP >gi|283548478|gb|GG730299.1| GENE 653 725638 - 727125 1547 495 aa, chain - ## HITS:1 COG:ECs2666 KEGG:ns NR:ns ## COG: ECs2666 COG0366 # Protein_GI_number: 15831920 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 495 1 495 495 975 93.0 0 MKNPTLLQYFHWYYPDSGHLWPELAERAGGLNDIGINMVWLPPAYKGASGGYSVGYDSYD LFDLGEFDQRGTIPTKYGDKNQLLAAIDALKHNDIAVLLDVVVNHKMGADEKENIRVQRV NADDRTQIEDEIIECEAWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPTEDGIFKIVND YTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTKEIKYWARWVMEQTQCDGFRLDAVKHI PAWFYKEWIEHVQEVAPRPLFIVAEYWSHEVDKLQTYINQVEGKTMLFDAPLQMKFHEAS RQGRDYDMSQIFTDTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLREN GVPSVFYPDLYGAHYEDTGGDGETYPIDMPIIEQLAELILARQRFAHGVQTLFFDHPNCI AFSRSGTDEDPGCVVVLSNGDDGEKTINLGANYGNKTWRDYLGNREESVVTDENGEATFF CNGGSVSVWVIEDVL >gi|283548478|gb|GG730299.1| GENE 654 727194 - 727565 460 123 aa, chain - ## HITS:1 COG:no KEGG:STM1962 NR:ns ## KEGG: STM1962 # Name: fliT # Def: flagellar biosynthesis protein FliT # Organism: S.typhimurium # Pathway: Flagellar assembly [PATH:stm02040] # 1 121 1 121 122 188 90.0 7e-47 MTSAVEFINRWQRIALLSHSLLELAQRGEWDLLLEQEVTYLQSIEVVMEEQTPPGITRSI QDLVAGYIKQTLDNEQLLKTLLQQRLDELSNLIGQSTRQKTLNNAYGRLSGMLLVPDAPT APQ >gi|283548478|gb|GG730299.1| GENE 655 727565 - 727972 558 135 aa, chain - ## HITS:1 COG:STM1961 KEGG:ns NR:ns ## COG: STM1961 COG1516 # Protein_GI_number: 16765299 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Salmonella typhimurium LT2 # 1 135 1 135 135 219 91.0 1e-57 MYTASGTKAYAQVSLESGVMSASPHQLIEMLFDGANSALVRARLFMQQGDTVAKGEALSK AINIIDNGLKAGLDQENGGEIATNLSALYDYMIRRLLQANLRNDCQAIEEVEGLLGNIAE AWKQISPKASSQESR >gi|283548478|gb|GG730299.1| GENE 656 727988 - 729394 1441 468 aa, chain - ## HITS:1 COG:STM1960 KEGG:ns NR:ns ## COG: STM1960 COG1345 # Protein_GI_number: 16765298 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Salmonella typhimurium LT2 # 1 468 1 467 467 538 77.0 1e-153 MPSFTSLGVGSNLPLDTLLTNLTTAEKKRLNPITQQQSTNTARLTAYGTLKSALEKFQTA NTALNSADLFKSTTVTSSTEDLKVSTSAGAAPGTYTVSVTQLAQAQSLSTKSGISSTKEA LGDTSSDSRTIKIEQKGRKEPLEIKLGKDQTSLEGIRDAINDADSGISASIVKVKENDYQ LVLTADSGVDNKMTISVSGDSKLNDLLAYDSTAGSGNMKQLVEAKNALLKVNGIDIERPS NTITDAPQGVTLNLTKEVTDARITVTKSNDKATEAIKGWVDAYNSLLDTFSTLTKYTEVD PGAEAQDKNNGALIGDSAVRTIQIGIRAQFSNGASDGAFKTLGEIGITTDGTSGKLKIDD TKLKKALEDNTAATRQLLVGDGKETGITTKIATEVKGYLADDGIIDVAQDNINATLKKLT KQYLAVSNSIDDTVARYKAQFTQLDSMMSKLNSTSTYLGQQFSAMSNS >gi|283548478|gb|GG730299.1| GENE 657 729650 - 731131 1296 493 aa, chain + ## HITS:1 COG:STM1959 KEGG:ns NR:ns ## COG: STM1959 COG1344 # Protein_GI_number: 16765297 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Salmonella typhimurium LT2 # 1 493 1 495 495 318 54.0 1e-86 MAQVINTNSLSLLTQNNLNKSQSTLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKG LTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQASNGTNSDSDLSSIQAEITQRL SEIDRVSGQTQFNGVKVLAGDNTLKIQVGANDNETISINLKEITSSTLGLNTFSVTGDKA ATADQLVKDFGATGTMNYKLGATDYTADVKTGAIKDGAAAAVFVGAADNALVTTSGNTKV DETDGATITAAATAAATTGGTVGAKFTFKGTEWTAVAGTTANANGNGTYTAKVDGQDITM TVAGSTSAVGAGATLSITGGNIYEQGAAGSNKLTTHANNVAAKESDLVAAKATKTGGTLD VGGVAYAVDGSGVVTNGGEITFVKNAGTANASLVKQSQASEATRNQLKLIDTALAQVDTL RGDLGAVQNRFDSTITNLGNTVNNLTSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQ ANQVPQNVLSLLR >gi|283548478|gb|GG730299.1| GENE 658 731294 - 732013 725 239 aa, chain + ## HITS:1 COG:STM1956 KEGG:ns NR:ns ## COG: STM1956 COG1191 # Protein_GI_number: 16765294 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Salmonella typhimurium LT2 # 1 239 1 239 239 403 97.0 1e-112 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV AERLAIPVQEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLQQLLEGNLRQ RVMDAIEALPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL >gi|283548478|gb|GG730299.1| GENE 659 732070 - 732621 428 183 aa, chain + ## HITS:1 COG:no KEGG:CKO_01024 NR:ns ## KEGG: CKO_01024 # Name: not_defined # Def: flagella biosynthesis protein FliZ # Organism: C.koseri # Pathway: not_defined # 1 183 1 183 183 331 91.0 7e-90 MTVQQSKRRPLSRYLKDFKHSQTHCAHCLKLLDRITLVRRGQIVNKIAIARLDTLLDEAE WEQEKKEWVALCRFCGDLHCKEQSDFFDIIGFKQFLFEQTEMSHGTVREYVVRLRRLGNH LTEQNISHDLLQEGFLDENLAPWLPETSTNNYRIALRKYEQFKAHTHMGHMQKSSWTASS DIY >gi|283548478|gb|GG730299.1| GENE 660 732847 - 733647 1290 266 aa, chain + ## HITS:1 COG:ECs2659 KEGG:ns NR:ns ## COG: ECs2659 COG0834 # Protein_GI_number: 15831913 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 1 266 1 266 266 462 93.0 1e-130 MKLALLGRQALMGVMAVALVAGMSVKTYADEGLLNKVKERGTLLVGLEGTYPPFSFQGDD GKLTGFEVEFAEALAKHLGVKATLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDF STPYTVSGIQALVKKGNEGVIKTAADLKGKKVGVGLGTNYEEWLRQNVQGVDIRTYDDDP TKYQDLRVGRIDAILVDRLAALDLVKKTKDTLAVTGEAFSRQESGVALRKGNEDLLKAVD AAIAEMQKDGTLKALSEKWFGADVTK >gi|283548478|gb|GG730299.1| GENE 661 733755 - 734741 1235 328 aa, chain + ## HITS:1 COG:yedO KEGG:ns NR:ns ## COG: yedO COG2515 # Protein_GI_number: 16129866 # Func_class: E Amino acid transport and metabolism # Function: 1-aminocyclopropane-1-carboxylate deaminase # Organism: Escherichia coli K12 # 1 328 33 360 360 619 94.0 1e-177 MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGRDIFIKRDDVTPMAMGGNKLRKLEFLAA DALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLSNGNRLLLD LFNTQIEMCDALTDPNAQLQELATRIEAQGFRPYAIPVGGSNALGALGYVESALEIAQQC EGAVELSSVVVASGSAGTHAGLAVGLEQLMPDVELIGVTVSRSVADQKPKVVALQQDIAR ELELTASADILLWDDYFAPGYGTPNEEGMEAVKLLARLEGILLDPVYTGKAMAGLIDGIS QKRFKDEGPILFIHTGGAPALFAYHPHV >gi|283548478|gb|GG730299.1| GENE 662 734763 - 735431 842 222 aa, chain + ## HITS:1 COG:yecS KEGG:ns NR:ns ## COG: yecS COG0765 # Protein_GI_number: 16129865 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 222 1 222 222 370 93.0 1e-103 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFILALMRLSPLLPVRWLARFYIS VFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWE AGASIGMTRWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS RTLEVFTMYLAASLIYWVMATVLSALQNYFEEQLNRQEKEPK >gi|283548478|gb|GG730299.1| GENE 663 735428 - 736180 276 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 18 241 27 256 563 110 33 2e-22 MSAIEVRNLVKKFHGQTVLHGIDLDVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTI KVGEITIDTARSLTQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKAE ATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKSLFTHPQQPRT RQFLEKFLMQ >gi|283548478|gb|GG730299.1| GENE 664 736412 - 737134 326 240 aa, chain + ## HITS:1 COG:STM1950 KEGG:ns NR:ns ## COG: STM1950 COG2771 # Protein_GI_number: 16765288 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 240 1 240 240 403 82.0 1e-112 MQDHDFFTWRRSMLLRFQEMATAEDVYNELQQQTQHLEFDFYALCVRHPVPFTRPKTSLY TTYPKAWVAHYQSENYFAIDPVLKPENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMT QCLMLPNRALGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRF SKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI >gi|283548478|gb|GG730299.1| GENE 665 737201 - 737425 311 74 aa, chain - ## HITS:1 COG:no KEGG:ROD_19701 NR:ns ## KEGG: ROD_19701 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 74 1 74 74 103 94.0 2e-21 MSTPDFSTAENNQELANEVTCLKALLTLMLQAMGQADAGRVILKMEKQIALIEDQSQAAV FSSTVKQIKQAYRQ >gi|283548478|gb|GG730299.1| GENE 666 737885 - 738541 521 218 aa, chain + ## HITS:1 COG:STM1947 KEGG:ns NR:ns ## COG: STM1947 COG2197 # Protein_GI_number: 16765285 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 218 1 218 218 419 98.0 1e-117 MINVFLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRSNSVDVVLMDMNMPGI GGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS GQRYIASDIAQQMALSQIEPEKTETPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT VNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLTSQ >gi|283548478|gb|GG730299.1| GENE 667 738538 - 740370 1884 610 aa, chain + ## HITS:1 COG:STM1946 KEGG:ns NR:ns ## COG: STM1946 COG0322 # Protein_GI_number: 16765284 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Salmonella typhimurium LT2 # 1 610 1 610 610 1182 95.0 0 MTDQFDAKAFLKTVTSQPGVYRMYDTAGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALV AQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRG AKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVA GLVSEEEYAQQVEYVRLFLSGKDDQVLTQLIARMEKASQNLEFEEAARIRDQIQAVRRVT EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFV GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLART NAAVALTTKLSQQSTIAQRLTALASVLKLPAVKRMECFDISHTMGEQTVASCVVFDANGP LRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIEESKIPDVILIDGGKGQLGQAKAVFA ELDVTWDKQHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDH AIGGHRKKRAKVKSTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASIEEIAKVPGISQAL AEKIFYSLKH >gi|283548478|gb|GG730299.1| GENE 668 740426 - 740974 264 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 9 175 486 665 904 106 38 5e-21 MQFNIPTLLTLFRVILIPFFVLAFYLPFTWAPFVCALIFCIAAVTDWFDGYLARRWNQST RFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIAREIIISALREWMAELGKRSS VAVSWIGKVKTTSQMAALAWLLWRPNIWVEYAGIALFFVAAVLTLWSMFQYLSAARGDLL DQ >gi|283548478|gb|GG730299.1| GENE 669 741552 - 741893 151 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283832689|ref|ZP_06352430.1| ## NR: gi|283832689|ref|ZP_06352430.1| hypothetical protein CIT292_06650 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_06650 [Citrobacter youngae ATCC 29220] # 1 113 1 113 113 195 100.0 9e-49 MKLPQVFSYATLALLLLTVSATASVLQNQAEREQELSAALPAGQGAILTGGTDDFAFTLR ARNRIHRPFAVQDGIGDPIIMNGFQDHNDNPARDGFINNPARGRFMFNAPIRR >gi|283548478|gb|GG730299.1| GENE 670 742323 - 743303 1072 326 aa, chain + ## HITS:1 COG:PM1211 KEGG:ns NR:ns ## COG: PM1211 COG1305 # Protein_GI_number: 15603076 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Pasteurella multocida # 2 326 44 368 368 428 59.0 1e-120 MGSRGVVKLWIPLPVDTEFQQMTALAFSGNYKQAYVTTNNTYGAKTLFASWDDSQGDLQI KVDIDIETADREPLKQDALKSWQAPEQIIYSLDVKPYLLPTAHTPVDGLVLETARKITGN EQDPLKKARLIYEWVSSHMERDNDVIGCGTGDVAEILKSGKLKGKCTDISSVFVALARAS GIPARELFGIRLGKANKLERYSKSAFGKADSAGVADVSGGQHCRAEFYLAGYGWLPCDPA DVTKMRLAENKTQQDADVQAVNAYLFGNWEMNWVGFNYGRDFELYPATEQGTMNNFGYPY AEVDGDPINFYDPKAFSYSYVATEQR >gi|283548478|gb|GG730299.1| GENE 671 743281 - 743637 227 118 aa, chain + ## HITS:1 COG:no KEGG:Shew185_3073 NR:ns ## KEGG: Shew185_3073 # Name: not_defined # Def: mercuric transport protein MerT # Organism: S.baltica_OS185 # Pathway: not_defined # 2 118 4 120 120 85 45.0 5e-16 MSPQNNAKGAGLTLLTAAAAAVTAGLCCIGPLLYLLFGISAASFAVFTRFEFLRIPLMLL SLGLLLRVFWRLYFSRRLWCSGWLTLKQARILYWCALALILPVLFYPTLVAWFYEVFE >gi|283548478|gb|GG730299.1| GENE 672 743634 - 743915 216 93 aa, chain + ## HITS:1 COG:no KEGG:Sbal_3058 NR:ns ## KEGG: Sbal_3058 # Name: not_defined # Def: heavy metal transport/detoxification protein # Organism: S.baltica # Pathway: not_defined # 1 93 1 93 94 87 54.0 2e-16 MKIFTLAACLLLPLVVQAANQKVVLDIQNMTCSLCVISVNQALRETDGVIKAKSSLKTRQ AEAIVPEGFPTDTLLKAVAKTGYTATLNHIEQQ >gi|283548478|gb|GG730299.1| GENE 673 744124 - 744789 847 221 aa, chain + ## HITS:1 COG:yecA KEGG:ns NR:ns ## COG: yecA COG3318 # Protein_GI_number: 16129858 # Func_class: R General function prediction only # Function: Predicted metal-binding protein related to the C-terminal domain of SecA # Organism: Escherichia coli K12 # 1 221 1 221 221 393 86.0 1e-109 MKTGPLNESELEWLDDVLTKYNTDKAILDVSELDGLLTAVLSSPYEIEPEQWLVAIWGGA QYVPRWSSEKEMTRFMNLAFQHMADTADRLDEYPEQFEPLFGLREIDEHELTIVEEWCFG YMRGVALSDWSALPDTLKPALEAIALHGTEENFAVVEKLTPEAFDESVDAIRLAALDLHA YWMAHPQEAPVKAPVKVDAKVGRNDPCPCGSGKKYKQCCLH >gi|283548478|gb|GG730299.1| GENE 674 744816 - 745994 1226 392 aa, chain - ## HITS:1 COG:ECs2615 KEGG:ns NR:ns ## COG: ECs2615 COG0814 # Protein_GI_number: 15831869 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 1 392 12 403 403 600 90.0 1e-171 MAGTTIGAGMLAMPLAAAGVGFSITLVLLVGLWALMCYTALLLLEVYQHVPADTGLGTLA KRYLGRYGQWVTGFSMMFLMYALTAAYISGAGELLASSISDWTGTAISPTTGVLLFTFVA GGVVCVGTSLVDLFNRLLFSAKIIFLVAMLALLMPHIHKVNLLTLPLQQGLALSAIPVIF TSFGFHGSVPSIVSYMNGNIRKLRWVFITGSAIPLIAYIFWQLATLGSINSSTFMGLLAN HAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVAGR MQTGVVTFLPPLAFALFYPRGFVMALGYAGVALAVLALLIPAMLAWQSRKHNPQANYRVA GGAPALALVFMCGIVVIAVQFSIAAGLLPEVG >gi|283548478|gb|GG730299.1| GENE 675 746255 - 746494 287 79 aa, chain + ## HITS:1 COG:no KEGG:CKO_01041 NR:ns ## KEGG: CKO_01041 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 79 1 79 79 125 93.0 4e-28 MESIHGHEVLNMMIESGEQYSNASLEAAIAARFGEQARFHTCSAEGMTAAELVAFLAAKG KFIARDDGFSTHESKICRH >gi|283548478|gb|GG730299.1| GENE 676 746540 - 747037 561 165 aa, chain - ## HITS:1 COG:STM1935 KEGG:ns NR:ns ## COG: STM1935 COG1528 # Protein_GI_number: 16765276 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Salmonella typhimurium LT2 # 1 165 1 165 165 284 95.0 5e-77 MLKTEMIDQLNEQMNLELYSSLLYQQMSAWCSYHSFEGAAAFLRRHAQEEMTHMQRLFDY LTDTGSLPRINAVSSPFAEYASLDELFRVTYEHEQLITQKINELAHAAMTYQDYPTFNFL QWYVAEQHEEEKLFKSVIDKLSLAGKSGEGLYFIDKELATLDTQN >gi|283548478|gb|GG730299.1| GENE 677 747231 - 747566 314 111 aa, chain - ## HITS:1 COG:no KEGG:SG1119 NR:ns ## KEGG: SG1119 # Name: not_defined # Def: lipoprotein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 105 1 105 111 145 69.0 5e-34 MKTFILALLPFVLTGCTITKQAQVSEASAVTGVVRLTYNQAMLQTARTDDYVTQGTATKE CQRLGYASAEAFGQPVSTCSVYAGSLCLNTKITLAWQCRGVAVSQSPSFNY >gi|283548478|gb|GG730299.1| GENE 678 747832 - 748470 783 212 aa, chain + ## HITS:1 COG:STM1933 KEGG:ns NR:ns ## COG: STM1933 COG0698 # Protein_GI_number: 16765274 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Salmonella typhimurium LT2 # 1 212 1 212 212 400 90.0 1e-112 MKIALMMENSQASKNAIIHNELKAVADEKGFPVFNVGMSDENDHHLTYIHLGIMASILLN SKAVDFVVTGCGTGQGAMMSLNIHPGVVCGYCLDPADAFLFSQINNGNALSLAFAKGFGW GAELNVRYMFEKAFTGRTGEGYPPERKEPQVRNAGILNQVKAAVVKENYLDTLRAIDPEL VKTAVSGPRFQQCFFENCQDKSIEAFVREVIG >gi|283548478|gb|GG730299.1| GENE 679 748504 - 749925 1540 473 aa, chain - ## HITS:1 COG:mll1728 KEGG:ns NR:ns ## COG: mll1728 COG0477 # Protein_GI_number: 13471679 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Mesorhizobium loti # 17 470 21 472 477 338 45.0 2e-92 MSEQLTVENKRGLSPAALLVAGAFFMEFIDGTVIATALPDMAKSFGVQAVDLNIGISAYL ITLAVLIPASGWIADRFGARKVFTLALAIFTLASVLCGLSESLESFVAMRILQGVGGALM VPVGRLAVLRTTPKHQLITAIATLTWPALVAPIIGPPLGGFITSYANWRWIFFINVPLGI VAMALALRFIPDIHDDERRPFDIAGFVATSVAMVSLVYAMERLGTQQPQGWLTAGLLTLG IATFLFALRHFRRAAWPMIRLDAMSVPTFRVTMYGGSLFRASISAVPFLLPLMFLVGFGM NAFHAGSLVLAVFVGNLTIKPATTPLIRWLGFKKLLLINGALNVLALLACALITPQTPVW VILLVLYLGGVFRSIQFTGVSTLAFADVPASQMSYANTLFSTATQLAVGLGISLAAIGIR IGDEISEWLALGHIPGISFRLAFVAIAIICLVGMVDTLRLARDAGSAVSAKNG >gi|283548478|gb|GG730299.1| GENE 680 750055 - 750306 328 83 aa, chain + ## HITS:1 COG:no KEGG:ECH74115_2639 NR:ns ## KEGG: ECH74115_2639 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O157_EC4115 # Pathway: not_defined # 1 83 1 83 83 126 90.0 3e-28 MSQTLNADQELLSDVVACQLVIKQMLDVLDVIAPVEVREKMSSQLKSIDFSSHPAGADPV TMRAIQKAVALIELKFTPQSESH >gi|283548478|gb|GG730299.1| GENE 681 750444 - 750947 517 167 aa, chain - ## HITS:1 COG:STM1932 KEGG:ns NR:ns ## COG: STM1932 COG1528 # Protein_GI_number: 16765273 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Salmonella typhimurium LT2 # 1 167 1 167 167 270 85.0 7e-73 MAAVGIVHKLNTQMNLEFYASNLYLHLSEWCYDHSLTGTATFLRTQAQGNVTQMMRMFNF MKSAGANPIVKAIDFPGDELTSLEELFQKTLDEYQQRSSKLSRLTNEAEALNDEPTIDFL HDLEKEQQQDGVLLQTILDEVRSAKRAGLCMAQTDKHLLNVVNYQHH >gi|283548478|gb|GG730299.1| GENE 682 751501 - 752058 650 185 aa, chain + ## HITS:1 COG:STM1931 KEGG:ns NR:ns ## COG: STM1931 COG0693 # Protein_GI_number: 16765272 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Salmonella typhimurium LT2 # 1 185 1 185 185 318 84.0 3e-87 MKKVAVLLAPGFEEAEAIVTIDILRRLNIDVETLACAESRAVVSYHDVPMVTDSTLAARQ TCLYDAVVLPGGPQGSVNLAASEAVIQFVTRHDEAGKLICPVCSAAARVLGGNGLLKGRR YVCSGDLWQNVTDGKYIDAPVVEDGNLISGKGLGHIFDFALTLSARLLGDDIPVREHADH IYYRW >gi|283548478|gb|GG730299.1| GENE 683 752374 - 753363 1332 329 aa, chain + ## HITS:1 COG:araF KEGG:ns NR:ns ## COG: araF COG1879 # Protein_GI_number: 16129851 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 329 1 329 329 599 93.0 1e-171 MHKFTKALAAIGLAAIMSQSAIAESMKLGFLVKQPEEPWFQTEWNFADKAGKDLGFEVIK IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGPAIMAKARGYDMKVIAVDDQFANAKG KPMETVPLVMMAATKIGERQGQELYKEMQKRGWDVKSTAVMAITANELDTARRRTSGSME ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDNTVLGGVRATE GQGFKAPNVIGIGINGVDAVSELSKGEATGFYGSLLPSPDVHGYKSSEMLYNWVTKGVEP PMFTEVTDVVLITRDNFKEELAKKGLGGK >gi|283548478|gb|GG730299.1| GENE 684 753496 - 755010 1672 504 aa, chain + ## HITS:1 COG:ECs2608 KEGG:ns NR:ns ## COG: ECs2608 COG1129 # Protein_GI_number: 15831862 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Escherichia coli O157:H7 # 1 504 1 504 504 958 94.0 0 MQQSTPYLSFRGIGKTFPGVNALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPT TGTLAIRGQEVSFADTTTALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLL NYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIE NLFRVIRELRNEGRIILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAM VGRDLGDIYGWKSRPYGAERLRLHEVKAPGVRTPISLSVRSGEIVGLFGLVGAGRSELMK GLFGGTRITAGQVFIDERPIDIRKPGHAIEAGMMLCPEDRKAEGIIPVHSVRDNINISAR RKHVLGGCVINNGWEATNAEHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKV ILLDEPTRGIDVGAKHEIYNVIYALAARGVAVLFASSDLPEVLGVADRIVVMREGEIAGE LLHEQADERQALSLAMPKVSQAVA >gi|283548478|gb|GG730299.1| GENE 685 755025 - 756011 1039 328 aa, chain + ## HITS:1 COG:araH KEGG:ns NR:ns ## COG: araH COG1172 # Protein_GI_number: 16132221 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli K12 # 1 328 2 329 329 498 93.0 1e-141 MSSVSTSGSGAAKSALNLGRIWDQYGMLVVFAVLFLVCSLFVPNFATFINMKGLGLAVSM SGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINMTESLWIGVAAGLLLGILCGLVN GFVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDERFFTLGYANWFGLPAPIWIT VACFIVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFILSGLVSAIAGIILA SRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGVLILGTVENAMNLLNISP FAQYVVRGLILLAAVIFDRYKQKAKRTL >gi|283548478|gb|GG730299.1| GENE 686 756187 - 756990 420 267 aa, chain + ## HITS:1 COG:STM1929 KEGG:ns NR:ns ## COG: STM1929 COG1877 # Protein_GI_number: 16765271 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphatase # Organism: Salmonella typhimurium LT2 # 1 267 1 267 267 409 76.0 1e-114 MTASLTLPPEQSANCAYFFDLDGTLAEIKPYPDQVVVPKTILQLLHRLATHNAGALALIS GRSMAELDALTTPFRFPLAGVHGAERRDISGQTHIVRLAAGIEREAGALLQTALSKLPGT TLEAKGMAFALHYRQAPEHEAALVTLAECITHTWPQLAVQHGKCVVEIKPKGTNKGDAIA AFMQEAPFAGRIPVFFGDDLTDETGFEVVNRAGGISVKVGSGATLATWRLDGVRDVWRWL EQINSSQQQLNTTNNRRGDYGSFSRSI >gi|283548478|gb|GG730299.1| GENE 687 756965 - 758386 1182 473 aa, chain + ## HITS:1 COG:STM1928 KEGG:ns NR:ns ## COG: STM1928 COG0380 # Protein_GI_number: 16765270 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose-6-phosphate synthase # Organism: Salmonella typhimurium LT2 # 1 473 1 473 473 824 85.0 0 MGRLVVVSNRIASPDDKGSAGGLAVGVLGALKAAGGLWFGWSGDTGNEDKPIKKVTRGNI TWASFNLSEQDYEEYYCQFSNAVLWPAFHYRLDLVQFQRPAWEGYLRVNALLVDKLLPLL SEDDIIWVHDYHLLPFAYELRKRGVNNSIGFFLHIPFPTPEIFNALPPHQTLLEQMCDFD LLGFQTENDRQAFLDCLKTQTQVTSHSEKHHKAWGKTFRTEVYPIGIEPDEIARQASGPL PPKMAQLKAELKNVKNIFSVERLDYSKGLPERFQAYEALLEHFPQHHGKIRYTQIAPTSR GEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQYFDRKLLMKIFRYSDVGLVTPLR DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAGALNQALTMSL DERIARHAEMLETIIKNDIDNWQATFICDLRKVTSRQSKRQSPDNVTSCSKLA >gi|283548478|gb|GG730299.1| GENE 688 758404 - 758832 477 142 aa, chain - ## HITS:1 COG:ECs2603 KEGG:ns NR:ns ## COG: ECs2603 COG0589 # Protein_GI_number: 15831857 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 142 1 142 142 211 76.0 3e-55 MSYAHILVAVAATPESQQLLAKAVSIARPVNARISLITLVSDPELYNQFAAPMLEDLRGL MQEETQDFIDKLSKEAQYPIEHTFITYGALNEHILDVCRKHAVDLVIYGNHNQSFFSRAS CSAKSVIGASHVDVLLVPLAGD >gi|283548478|gb|GG730299.1| GENE 689 759626 - 759967 265 113 aa, chain + ## HITS:1 COG:no KEGG:SG1126 NR:ns ## KEGG: SG1126 # Name: flhD # Def: transcriptional activator FlhD # Organism: S.enterica_Gallinarum # Pathway: Two-component system [PATH:seg02020]; Flagellar assembly [PATH:seg02040] # 1 113 4 116 116 181 92.0 1e-44 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGISEEMADTLATLTLPQMVKLAET NQLVCHFRFDDHQTVTRLTQDSRVDDLQQIHTGIMLSTRLLSDIDDAARKKRA >gi|283548478|gb|GG730299.1| GENE 690 759970 - 760548 445 192 aa, chain + ## HITS:1 COG:no KEGG:CKO_01057 NR:ns ## KEGG: CKO_01057 # Name: not_defined # Def: transcriptional activator FlhC # Organism: C.koseri # Pathway: Two-component system [PATH:cko02020]; Flagellar assembly [PATH:cko02040] # 1 192 2 193 193 381 98.0 1e-104 MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQQEDGPLLALTRA WTLVRFVDSGLLELSTCNCCGGNFITHAHQPAGSFACSLCQPPSRAVKRRKLSQNAADII PQLLDEQIEQAV >gi|283548478|gb|GG730299.1| GENE 691 760673 - 761560 959 295 aa, chain + ## HITS:1 COG:STM1923 KEGG:ns NR:ns ## COG: STM1923 COG1291 # Protein_GI_number: 16765265 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Salmonella typhimurium LT2 # 1 295 1 295 295 541 97.0 1e-154 MLILLGYLVVIGTVFGGYMMTGGHLGALYQPAELVIIGGAGIGAFIVGNNGKAIKGTMKA IPMLFRRSKYTKAMYMDLLALLYRLMAKSRQQGMFSLERDIENPKESEIFASYPRILADA VMLDFIVDYLRLIISGNMNTFEIEALMDEEIETHESEAEVPANSLAMVGDSLPAFGIVAA VMGVVHALASADRPAAELGSLIAHAMVGTFLGILLAYGFISPLASVLRQKSAETTKMMQC VKITLLSNLNGYAPPIAVEFGRKTLYSSERPSFIELEEHVRAVRNPAAQQTTEDA >gi|283548478|gb|GG730299.1| GENE 692 761557 - 762486 677 309 aa, chain + ## HITS:1 COG:STM1922 KEGG:ns NR:ns ## COG: STM1922 COG1360 # Protein_GI_number: 16765264 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 554 93.0 1e-158 MKNQAHPIIVVKRRKHKGHGGGAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIA EYFRTPLATAVTGGNRISNSQSPIPGGGDDYTQQQGEVHKQPNIDDLRKRMEQSRLRKLR GDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAI APVLNGIPNRISLSGHTDDYPYANGEKGYSNWELSADRANASRRELVSGGLDDGKVLRVV GMAATMRLSDRGPEDAINRRISLLVLNKQAEEAILHENAESQNEPVSVLQQPAELPPASV PTSPPANPR >gi|283548478|gb|GG730299.1| GENE 693 762497 - 764539 2032 680 aa, chain + ## HITS:1 COG:STM1921 KEGG:ns NR:ns ## COG: STM1921 COG0643 # Protein_GI_number: 16765263 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Salmonella typhimurium LT2 # 1 680 3 671 671 1070 88.0 0 MDISDFYQTFFDEADELLADMEQHLLDLVPEAPDSEQLNAIFRAAHSIKGGAGTFGFTIL QETTHLMENLLDEARRGEMQLNADIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNA LRQLALEAKGETSPAVVNTARLSVVDSAAIQEEADAHPAPAGEEIKKRIVLSRLKSSEVD LLEEELGNLATLTDVVKGRDTLSATLDGNLAEDDIIAVLCFVIEADQIEFETVSAAPAAV DAEAATEAVAVIAKPQPVVVAPAVKAAATEAPHARAERDKPARASESTSIRVAVEKVDQL INLVGELVITQSMLAQRSNELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFS RFPRLVRDLAGKLGKQVELTQVGSSTELDKSLIERIIDPLTHLVRNSLDHGVELPEKRLE AGKSPIGNLTLSAEHQGGNICIEVTDDGAGLNRERILAKAISQGMPIHDNMSDDEVGMLI FAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGQGTTIRILLPLTLAILDG MSVRVADEVFILPLNAVMESLQPREEDLHPLAGGERVLEVRGEYLPLVELWKVFEVEGAK TEATQGIVVILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVALI VDVSALQGLNREQRVAITAA >gi|283548478|gb|GG730299.1| GENE 694 764561 - 765064 713 167 aa, chain + ## HITS:1 COG:STM1920 KEGG:ns NR:ns ## COG: STM1920 COG0835 # Protein_GI_number: 16765262 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Salmonella typhimurium LT2 # 1 167 1 167 167 283 92.0 8e-77 MTGMSNVTKLAGEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTN LRGVIVPIVDLRVKFSQSDVDYNENTVVIVLNLGQRVVGIVVDGVSDVLSLTTEQIRPAP EFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLDIAAAHMA >gi|283548478|gb|GG730299.1| GENE 695 765144 - 766403 1502 419 aa, chain - ## HITS:1 COG:RSc1957 KEGG:ns NR:ns ## COG: RSc1957 COG1301 # Protein_GI_number: 17546676 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Ralstonia solanacearum # 3 416 2 416 428 352 48.0 5e-97 MANANKLTLFIVIFMLAGILSGAVIHSYASHGVVTAWADNITLLTDIFLRLIKMVIAPLV FSTLTVGIMRLGETSTIGRVGGKAMIWFISSSVLSILVGLFVVSLEQPGSGLNLAIPLEA TDTGLAVGGMSLKGFLSHTIPTSIAEAMANNEILQIVVFSLFFGIGGASLGEKFNAPLVA ALDVVSHIMLKVTGYVMYVAPLAIFAAISSVISTQGLGILLNYASFIGGYYVAILLTCLV LLAAGYVMLKKEVFRLVSMLKDPVLVAFTTSSSEAAYPKTLEQLTKFGCSRNIVSFVLPI GYSFNLVGSMVYCSFASLFIAQAYNIHLSFAEITVLMLTLMLASKGIAGVPRSALVVLAA TIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLAQDEGLLEEEPELVEREA >gi|283548478|gb|GG730299.1| GENE 696 766808 - 768463 1595 551 aa, chain + ## HITS:1 COG:STM1919 KEGG:ns NR:ns ## COG: STM1919 COG0840 # Protein_GI_number: 16765261 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 551 1 553 553 730 86.0 0 MFNRIRVVTMLMMVLGVFALLQLVSGGLLFSSLQQNQQSFVISNDLRQQQSELTSTWDLM LQTRINLSRSSARMMMDASNQQSSAKNDLLKNAKTSLAQAETHYAKFKNITPLPEMAEAS GNVDEKYQQYHAALSELVQFLENGNMDAYFAQPTQGMQNALGEALGKYASVSEKLYAQAF DQSARDYHFAQWQLGILAVVLVLILVVVWYGIRQTLLNPLARVIAHIREIASGNLTAMLT VSGRNEIGELASTVDHMQRSLTETVTLVREGSDAIYSGTSEIASGNTDLSSRTEQQASAL EETAASMEQLTATVKQNADNARQASQLAKSASDTAQHGGKVVDSVVSTMHEIADSSKKIA DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIE DSVSRVDTGSVLVESAGETMNDIVTAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDR VTQQNASLVQESAAAAAALEEQASRLTQSVSTFRLASRPASTKPRDTRLPAAATASFSRQ NIEQDTNWETF >gi|283548478|gb|GG730299.1| GENE 697 768507 - 770108 1355 533 aa, chain + ## HITS:1 COG:ECs2595 KEGG:ns NR:ns ## COG: ECs2595 COG0840 # Protein_GI_number: 15831849 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 # 1 533 1 533 533 657 77.0 0 MFNRIRISTTLFLILILCGVLQIGSNGLSFWAFRDGFQNLNQVERSNQQRAALAQTRAVL LQASTALNKAGTLTALSYPPEDIKALMTLARDSLAQSESLFKRFMATSDTTEQGKALIGA TEKSFSQWHSDLAHQATWLENNQLSDFLTAPVQASQDAFDANVNAWQNNIDRVLQTAEDL SQRNYHMSGVIFATMVVLAVLLTSAALYWSRKMIVQPLAIIGSHFDSIAAGNLARPVAVY GRNEISAIFASLKKMQQALRETVSEVRRGSSAMHNGISEIAMGNNDLSSRTEQQAAALAQ TAASMEQLTATVGQNADNARQASGLTKSAADTAHKGGEQTSRVASTMHEISASSQKIGDI IGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIEES VTRVHQGSQLVDMAARTMTEIVSAVTRVNDIMGEIASASDEQRRGIEQVAQAVSQMDSVT QQNAGLVEEAASATGQLATQADHLSACVAFFKLEEQTVAKPELAQPQAVPVVS >gi|283548478|gb|GG730299.1| GENE 698 770128 - 771000 592 290 aa, chain + ## HITS:1 COG:STM1918 KEGG:ns NR:ns ## COG: STM1918 COG1352 # Protein_GI_number: 16765260 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Salmonella typhimurium LT2 # 1 290 1 288 288 547 93.0 1e-155 MTSSLPSGQTSLLLQMTQRLALSDAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRT LGLDDFGRYLSMLEANQNSAEWQAFINSLTTNLTAFFREGHHFPVLSDHARRRNGEYRVW SAAASTGEEPYSIAITLADTLGMAPGRWRVFASDIDTEVLEKARSGIYRLDELKTLSPQQ LQRYFMRGTGPHEGLVRVRQELAGHVEFSSVNLLDKQYNVPGPFDAIFCRNVMIYFDKTT QQDILHRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTVYAHAPGKDKA >gi|283548478|gb|GG730299.1| GENE 699 770997 - 772046 941 349 aa, chain + ## HITS:1 COG:ECs2593 KEGG:ns NR:ns ## COG: ECs2593 COG2201 # Protein_GI_number: 15831847 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Escherichia coli O157:H7 # 1 349 1 349 349 625 93.0 1e-179 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKYNPDVLTLDVEMP RMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYS EMIAEKIRTASRAKLAAHKPMAAPTTLKAGPLLSSEKLLVIGASTGGTEAIRHVLQPLPL SSPGILITQHMPPGFTRSFAERLNKLCQITVKEAEDGERVLPGHAYIAPGDKHMELARSG ANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAMNQAGAW TIAQNEASCVVFGMPREAINMGGVSEVVYLSQVSQQMLAKISAGQAIRI >gi|283548478|gb|GG730299.1| GENE 700 772064 - 772453 642 129 aa, chain + ## HITS:1 COG:ECs2592 KEGG:ns NR:ns ## COG: ECs2592 COG0784 # Protein_GI_number: 15831846 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Escherichia coli O157:H7 # 1 129 1 129 129 231 97.0 3e-61 MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQVGGFGFVISDWNM PNMDGLELLKTIRADGAMSSLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL NKIFEKLGM >gi|283548478|gb|GG730299.1| GENE 701 772464 - 773108 885 214 aa, chain + ## HITS:1 COG:STM1915 KEGG:ns NR:ns ## COG: STM1915 COG3143 # Protein_GI_number: 16765257 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 214 1 214 214 339 95.0 3e-93 MMQPQIKPVDEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQ MTAQAAERALNSVEASQPHQDAMEKGAKGLTKRWDEWFENPIELSDARELVTDTRQFLGD VPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQGARPKR ENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGF >gi|283548478|gb|GG730299.1| GENE 702 773267 - 774418 1012 383 aa, chain + ## HITS:1 COG:STM1914 KEGG:ns NR:ns ## COG: STM1914 COG1377 # Protein_GI_number: 16765256 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Salmonella typhimurium LT2 # 1 383 1 383 383 689 93.0 0 MAEESDDDKTEAPTPHRLEKAREEGQIPRSKELTSLLILLVGVCIIWIGGESLARRLAGM LSAGLRFDHSMVNDPNLILSQIILLIKDAMIALLPLITGVVLVALISPVMLGGLIFSGKS LQPKFSKLNPLPGIKRMFSAQTGAELLKAILKSTLVGSVAGFYLWHNWPEMMRLVAESPI TAMGNALDLVGMCALLVVLGVIPMVGFDVFFQIYSHLKKLRMSRQDIRDEFKQSEGDPHV KGKIRQMQRAAAQRRMMADVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGPVALR IREIGAEHRVPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGKP PPQPENLPVPEALDFMNEKNTDG >gi|283548478|gb|GG730299.1| GENE 703 774411 - 776489 2246 692 aa, chain + ## HITS:1 COG:flhA KEGG:ns NR:ns ## COG: flhA COG1298 # Protein_GI_number: 16129831 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli K12 # 1 692 1 692 692 1219 95.0 0 MANLVAMLRLPGNLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINVVGGLLVGVLQHGMSMGSAAE SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVTQLFSNPSVMLLSAAVLG LLGLVPGMPNLVFLMFTAALLGLAWWMRGRELKAPAEPQPVKMPENNSVVEATWNDVQLE DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRI LMKGVEIGSGDAYPGRWLAINPGTAAGSLPGEKTVDPAFGLDAIWIESALKEQAQIQGFT VVEASTVVATHLNHLIGQFAAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKV LQNLLDEKVPIRDMRTILETLAEHAPLQNDPHELTAVVRVALGRAITQQWFPGNEEVQVI GLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLAR FLRRSIPQLVVLSNMELSDNRHIRMTATIGGK >gi|283548478|gb|GG730299.1| GENE 704 776489 - 776881 342 130 aa, chain + ## HITS:1 COG:no KEGG:ROD_19231 NR:ns ## KEGG: ROD_19231 # Name: flhE # Def: flagellar protein FlhE # Organism: C.rodentium # Pathway: not_defined # 1 130 1 130 130 220 85.0 1e-56 MRNVLWLLFFPLFAQAAGEGAWQASAMGITLNHRGESASSAPLVPSQPVSGLMTLVAWRY ELNGPTPAGLRVRLCSQSRCVELDGQSGTTNGFNNVPAIEPMHFVWEVPGGGRLIPALRV QSNQVIVNYR >gi|283548478|gb|GG730299.1| GENE 705 777144 - 778730 1640 528 aa, chain + ## HITS:1 COG:YPO1226 KEGG:ns NR:ns ## COG: YPO1226 COG2211 # Protein_GI_number: 16121514 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Yersinia pestis # 13 502 2 483 498 389 40.0 1e-108 MKTPKIGLVNYFAYGSGDFLGAGTTALTAAWLLYFYTTFCGLSPIEATFIFATARVLDAA VSPLMGFLTDNFGSTWLGKRFGRRKFFILLGIPCVFSYSLMWVGDMGFWYYLLTYLIFDV VYTMILVPYETLVPEMTDDFKQKTKFSGARISMAQMSAILASFLPGILLTLFGKDNPVSF FYASLVFSVLCALMLTFVWFFTWERPRAEWTEAALRAEEEKKKLTFSQSMNRLFVELSST LRIRIFRQHLGMYLGGYIAQDVFNAVFTYYVVFVLMQEASMASNLLGTMAIFQFIAVIAM IPLCIRFGPAPSYRMVVVLFGASSLSYALLYYVGLSDVYSLLLLVSAIAGLGRGGINYVP WNTYTYIADVDEVITGQRREGIFAGIMTLTRKASQAGAVMLVGIVMQMSGFVSGQSVQPA AVSHTILLILSCGTLIVLALGFLVSLRFKLNLQTHSTLREETAKMRESGHPVPEGLSAKG RATLEMLSGMPYESLWGNNNIGYLNRNKPAAPKLEKGAALNSTLTEVK >gi|283548478|gb|GG730299.1| GENE 706 778731 - 779870 1333 379 aa, chain + ## HITS:1 COG:STM1911 KEGG:ns NR:ns ## COG: STM1911 COG4225 # Protein_GI_number: 16765253 # Func_class: R General function prediction only # Function: Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins # Organism: Salmonella typhimurium LT2 # 1 379 1 379 379 725 92.0 0 MIVYPVKHSPLLRQPEHFIARDELKTLIKKVTHNLVNIHDATGEFLLRLDDGRVIDTKGW AGWEWTHGVGLYGMYQYYQQTGDETMRDIIDSWFADRFAEGATTKNVNTMAPFLTLAYRY EETRNPAYLPWLDSWAEWVMHDMPRTEFGGMQHITLAEENHQQMWDDTLMMTVLPLAKIG KLLNRPEYIEEATYQFLLHVQNLMDKETGLWFHGWSYEGQHNFANARWARGNSWLTIVIP DFLELLDLPENNAVRRYLVQVLNAQIAALAKCQDESGLWHTLLDDPQSYLESSATAGFAY GILKAVRKRYVGQHYAPVAEKAIRGIVQHISPEGELLQTSFGTGMGHNLDFYRNIPRTSM PYGQAMAMLCLTEYLRKYF >gi|283548478|gb|GG730299.1| GENE 707 779842 - 781779 1708 645 aa, chain - ## HITS:1 COG:STM1910 KEGG:ns NR:ns ## COG: STM1910 COG0768 # Protein_GI_number: 16765252 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Salmonella typhimurium LT2 # 1 620 1 620 623 1131 88.0 0 MTFRDFEAEEKLFQRRVIVAFGLVVICFGILIYNLYNLQICQHQYYTTRSNANDIKMLPV APTRGMIYDRNGIPLVRNVTWYDISVTPYKIKDMDALIGQLTPIVDLTPDDIDQFRHELK SSSRYRPVVLKNALTDVEIARFSVNQFHFSGVNINSYEDRQYPYGAALAHVLGYVSKIND NDLKALDKKGLAENYAADHNIGKQGIERYYENELHGKTGYQEVEVDNHGRIVRLIKDVPP VAGKDIHLTLDLHLQQYIESLLAGQRAAVLVEDPHDGSVLAMVSTPSYDPNPFVKGISYQ DYNKLLQDKDLPLINRVTQGLYPPASTVKPYMAMSALLDGVITPQTSFFGAPTWTLPGTE RHYRDWKKSGHGMLDVTKAIEESADTFFYQVAYMMGIDRINSMLSQFGYGKPTGIDLDEE YNGLLPSREWKQKVHKKAWYQGDTISVGIGQGYWIATPIQMVKAMVALINNGKVIVPHLL LDEESGKTHTPYQAPEVPSQIASASSPYWGLVRQAMFGMANEPNGTGYKFFHTAPYGIAA KSGTSQVFSLKENQTYNAKMIPIRLRDHVFYTAFAPYKNPKVAVALILENGGSDGVTAAP VMRQIMDHLFVPQDNAAQTETTEQAGPIATAPPDAGIKNTYASIR >gi|283548478|gb|GG730299.1| GENE 708 782066 - 783799 2258 577 aa, chain - ## HITS:1 COG:STM1909 KEGG:ns NR:ns ## COG: STM1909 COG0018 # Protein_GI_number: 16765251 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 577 1 577 577 1115 95.0 0 MNIQALLSEKVSQAMIAAGAPADCEPQVRQSAKVQFGDYQANGMMAVAKKLGMAPRQLAE QVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAQHVQQALTCDRLGVTQPAKQTVVVDYS APNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN AGEMALADLEGFYRDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQ LTYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPM GVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYVPD SVPLEHHMFGMMLGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPDMPADELEKL ANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDENA LTNAQVIIREDREAQLAARLLQFEETLAVVAREGTPHVMCAYLYDVAGLFSGFYEHCPIL SAENEEIRNSRLKLAQLTAKTLKLGLDTLGIETVERM >gi|283548478|gb|GG730299.1| GENE 709 784038 - 784604 408 188 aa, chain + ## HITS:1 COG:STM1908 KEGG:ns NR:ns ## COG: STM1908 COG3102 # Protein_GI_number: 16765250 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 186 1 186 189 328 84.0 3e-90 MANWQTVEELHDISADLPHFTQALTDLSTRLGLDVTPLEADHISLRCHQNTTAERWRRGF EQCGELLSENIINGRPICLFKLHEPVCVQHWKFSIVELPWPGEKRYPHEGWEHIEIVLPG DAQTLNARALALLSDQGLSQPGIFVKTSSPKGERERLPNPTLAVSDGSVTIKFHPWSIET IVASERQE >gi|283548478|gb|GG730299.1| GENE 710 784607 - 785353 401 248 aa, chain + ## HITS:1 COG:cutCm KEGG:ns NR:ns ## COG: cutCm COG3142 # Protein_GI_number: 16132223 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Escherichia coli K12 # 1 247 1 247 248 410 82.0 1e-115 MTLLEVCCYSMECARTAQQNGADRIELCSAPKEGGLTPSLGVLRSVRQHIAIPVNPIIRP RGGDFCYTDGEFAAMLDDIAMVRELGFSGLVTGILDADGNVDMPRMEKIMAAAGPLKVTF HRAFDMCANPLNALQKLSQLGIARVLTSGQKSDAVQGLTKIMELITQAGAPIIMAGAGVR ASNLSLFLDAGVQEVHSSAGVWLASPMRYRNSGLSMSSDTQADEYSRYAVDGAAVAEMKA IIARHQAS >gi|283548478|gb|GG730299.1| GENE 711 785585 - 786553 1060 322 aa, chain - ## HITS:1 COG:STM1906 KEGG:ns NR:ns ## COG: STM1906 COG0500 # Protein_GI_number: 16765248 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 322 1 323 323 622 91.0 1e-178 MIDFGNFYQLIAKNHLSHWLETLPAQIAAWQRDQHGLFKQWSNAVEFLPELTPYRLDLLH SVTAESEQPLSDGQLKRIDTLMRNLMPWRKGPYSLYGVNIDTEWRSDWKWDRVLPHLSDL TGRTILDVGCGSGYHMWRMVGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGI EQLPALNAFDTVFSMGVLYHRRSPLEHLWQLKDQLVKDGELVLETLVVEGDENTVLVPGD RYAQMRNVYFIPSALALKNWLEKCGFVDVRIADVCVTTTEEQRRTEWMITESLADFLDPN DHSKTLEGYPAPLRAVLVARKP >gi|283548478|gb|GG730299.1| GENE 712 786550 - 787293 878 247 aa, chain - ## HITS:1 COG:ECs2580 KEGG:ns NR:ns ## COG: ECs2580 COG0500 # Protein_GI_number: 15831834 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 # 1 247 1 247 247 496 95.0 1e-140 MSHRDTLFSAPIASLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPNTQV YDLGCSLGAATLSVRRNIHHENCKIIAIDNSPAMVERCRRHIDAYKAPTPVEVIEGDIRD ITIENASMVVLNFTLQFLEPPERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNM HHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHQAGFEHSELWFQCFNFGSLVA LKAEVSA >gi|283548478|gb|GG730299.1| GENE 713 787334 - 787729 379 131 aa, chain - ## HITS:1 COG:ECs2579 KEGG:ns NR:ns ## COG: ECs2579 COG3788 # Protein_GI_number: 15831833 # Func_class: R General function prediction only # Function: Uncharacterized relative of glutathione S-transferase, MAPEG superfamily # Organism: Escherichia coli O157:H7 # 1 130 11 140 141 218 93.0 3e-57 MVSALYAVLGALLLIKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPVALVL LLFMEMNGAETWMVHICGLMLIAGRLMHYYGFHHRLFRWRRSGMSATWCSLLLMVLANLW YMPWELVFSLH >gi|283548478|gb|GG730299.1| GENE 714 787782 - 788600 663 272 aa, chain - ## HITS:1 COG:STM1903 KEGG:ns NR:ns ## COG: STM1903 COG1801 # Protein_GI_number: 16765245 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 272 1 272 272 485 87.0 1e-137 MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKAEIVTRWHAQTTDAFRF CFKFPATISHQAALRNCDDLVQEFFTRMSPLESRIGQYWLQLPATFGPRDLPALWQFLDA LPEAFTYGVEVRHQDFFAKGEAEQLLNRGLHERGVNRVILDSRPVHAAIPHTEAIRDAQR KKPKVPVHAVVTAKHPLVRFIGSDNMAQNRELFAVWLTKLSQWQQSTTPYLFLHTPDIAQ APELVDTLWADLRSALPEIGSAPSIPQQSSLF >gi|283548478|gb|GG730299.1| GENE 715 788597 - 789163 576 188 aa, chain - ## HITS:1 COG:STM1902 KEGG:ns NR:ns ## COG: STM1902 COG1335 # Protein_GI_number: 16765244 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Salmonella typhimurium LT2 # 1 188 1 188 188 330 87.0 1e-90 MLELNAKTTALVVIDLQEGILPFAGGPHTAHDVVTRAARLAEKFRAHGSPVVMVRVGWSD DYAEALKQPVDAQTPAKALPDNWWNYPAALGKCASDLEVTKRQWGAFYGTDLELQLRRRG IDTIVLCGISTNIGVESTARNAWELGFNLIIAEDACSAASADQHQGSMTHIFPRIARVRS VDEILQAL >gi|283548478|gb|GG730299.1| GENE 716 789433 - 791205 2164 590 aa, chain + ## HITS:1 COG:ECs2576 KEGG:ns NR:ns ## COG: ECs2576 COG0173 # Protein_GI_number: 15831830 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 590 1 590 590 1146 94.0 0 MRTEYCGQLRLSHEGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA SELRNEFCIQVTGTVRARDAKNVNADMATGEIEVLASDLTIINRSDSLPLDSNHVNTEEA RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT APQVREVMEALVRNLWLEVKGVDLGDFPIMTFAEAERRYGSDKPDLRNPMELVDVADLVK GVEFAVFSGPANDPKGRVAALRVPGGAALSRKQIDDYGNFIKIYGAKGLAYIKVTERAKG LEGITSPVAKFLNAEIVEAILARTGAQDGDMIFFGADNKKVVADAMGALRLKLGKDLNIT DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPEDAVANAYDMVING YEVGGGSVRIHNGDMQQTVFGILGINEQEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANEAALAELSIQVVKKAENN >gi|283548478|gb|GG730299.1| GENE 717 791207 - 791650 411 147 aa, chain + ## HITS:1 COG:STM1900 KEGG:ns NR:ns ## COG: STM1900 COG0494 # Protein_GI_number: 16765242 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Salmonella typhimurium LT2 # 3 147 6 150 150 243 84.0 1e-64 MKYKQPVSVLVVIYAKDTGRVLMLQRRDDPDFWQSVTGSLEEGETASQAALREVKEEVAI DVAREQLTLIDCQRTVEFEIFSHLRHRYAPGIMRNSESWFCLALPTEREIVFTEHLTYRW VNAHEAAQLTKSWSNRQAIEEFVINVA >gi|283548478|gb|GG730299.1| GENE 718 791679 - 792422 1070 247 aa, chain + ## HITS:1 COG:STM1899 KEGG:ns NR:ns ## COG: STM1899 COG0217 # Protein_GI_number: 16765241 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 246 1 246 246 437 97.0 1e-123 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN MTRDTLNRAIARGVGGDEDSNMETIIYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFSKT GGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMG KVRDALEAAGLKADSAEVTMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISD EVAATLE >gi|283548478|gb|GG730299.1| GENE 719 792457 - 792978 541 173 aa, chain + ## HITS:1 COG:STM1898 KEGG:ns NR:ns ## COG: STM1898 COG0817 # Protein_GI_number: 16765240 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Salmonella typhimurium LT2 # 1 173 1 173 173 302 98.0 2e-82 MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ PDYFAIEQVFMAKNADSALKLGQARGVAIVAATNQDLPVFEYAARQVKQTVVGIGSAEKS QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR >gi|283548478|gb|GG730299.1| GENE 720 793059 - 793670 698 203 aa, chain + ## HITS:1 COG:ECs2571 KEGG:ns NR:ns ## COG: ECs2571 COG0632 # Protein_GI_number: 15831825 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Escherichia coli O157:H7 # 1 203 1 203 203 373 97.0 1e-103 MIGRLRGIILEKQPPLVLLETGGVGYEVHMPMTCFYELPEAGQEAIIFTHFVVREDAQLL YGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREELGALVKLPGIGKKT AERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPVTDDAEQEAVAALVALGYKPQEASRM VSKIARPDASSETLIREALRAAL >gi|283548478|gb|GG730299.1| GENE 721 793679 - 794689 1112 336 aa, chain + ## HITS:1 COG:ECs2570 KEGG:ns NR:ns ## COG: ECs2570 COG2255 # Protein_GI_number: 15831824 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Escherichia coli O157:H7 # 1 336 1 336 336 622 96.0 1e-178 MIEADRLISAVSNTPEDLVDRAIRPKLLEEYIGQPQVRSQMEIFIQAAKLRGDALDHLLI FGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSP VVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR LEFYQVADLQHIVGRSARFMGLEMSDEGALEVARRARGTPRIANRLLRRVRDFAEVKHDG TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPEMP >gi|283548478|gb|GG730299.1| GENE 722 794768 - 795553 871 261 aa, chain - ## HITS:1 COG:STM1893 KEGG:ns NR:ns ## COG: STM1893 COG1108 # Protein_GI_number: 16765235 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 261 1 261 261 396 98.0 1e-110 MIELLLPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAV IAVTLMLAAGLVWLEKRPHLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLL AVTPDDLIAIAIGVVIVLAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTI GVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVGVGMIAVTGGLTFSAFYDTPAG PSVVLCAALLFIFSMMKKQAS >gi|283548478|gb|GG730299.1| GENE 723 795550 - 796305 222 251 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 202 1 212 305 90 30 4e-16 MTTLVSLENVSVSYGQRRVLSDVSLELRPGKILTLLGPNGAGKSTLVRVVLGLVAADEGV IKRNGQLRIGYVPQKLYLDTTLPLTVSRFLRLRPGTKKEDILPALKRVQAGHLMNAPMQK LSGGETQRVLLARALLNKPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD LHLVMAKTDEVLCLNHHICCSGAPEVVSMHPEFISMFGQRGAEQLGIYRHNHNHRHDLQG RIVLRRGNGHS >gi|283548478|gb|GG730299.1| GENE 724 796369 - 797328 482 319 aa, chain + ## HITS:1 COG:STM1891 KEGG:ns NR:ns ## COG: STM1891 COG4531 # Protein_GI_number: 16765233 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Zn2+ transport system, periplasmic component/surface adhesin # Organism: Salmonella typhimurium LT2 # 1 319 15 333 333 579 93.0 1e-165 MIGRIMLHKNTLLFAALSAALWGSATQAANAAVVASLKPLGFIASAIADGVTDTQVLLPD GASEHDYSLRPSDVKRLQDADLVVWIGPEMEAFMEKSVKNIPNAKQVTIAQLNDVKPLLM KGADDDDDDHGHNDAGGEKSDEHHHHGDYNMHLWLSPEIARASAVAIHEKLVELMPQSRA KLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEI QPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTS YSAFLNQLANQYASCLKGD >gi|283548478|gb|GG730299.1| GENE 725 797344 - 798663 1385 439 aa, chain + ## HITS:1 COG:STM1890 KEGG:ns NR:ns ## COG: STM1890 COG0739 # Protein_GI_number: 16765232 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Salmonella typhimurium LT2 # 1 439 1 439 439 832 94.0 0 MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPDSAPIVKTIELEKSEIR SLLPEASEPIDQAAQEDEAIPQDELDDKTSGEAGVHEYVVSTGDTLSSILNQYGIDMGDI SQLAASDKELRNLKIGQQLSWTLSAEGDLQRLTWEVSRRETRTYDRTATGFKMSSEMQQG DWVNSRIKGTVGGSFVASAKDAGLTSSEISAVIKAMQWQMDFRKLKKGDEFSVLMSREML DGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFMRFPTAKQFRISSNFNP RRLNPVTGRVAPHKGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAVRHGRTYTTRYM HLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGS DRTDYLAQVKEVVPQLRFD >gi|283548478|gb|GG730299.1| GENE 726 798783 - 799754 782 323 aa, chain + ## HITS:1 COG:ECs2565 KEGG:ns NR:ns ## COG: ECs2565 COG1560 # Protein_GI_number: 15831819 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1 323 1 323 323 614 92.0 1e-176 METKKKNIEYIPEFHKSFRHPRYWGAWLGVAAIAGIALTPASFRDPVLAKLGRLAGRLGK SSRRRALINLSLCFPERSEAERDAIVDEMFATAPQAMVMMAELAIRGPEKIQHRVDWQGL EIIEEMRRNDEKVIFLVPHGWGVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRF GGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVC HARVVPLFPVYDGKTHRLTIQVRPPMDDILTADDRTIARRMNEEVEIFVAPHLEQYTWIL KLLKTRKPGEIEPYKRKDLYPKK >gi|283548478|gb|GG730299.1| GENE 727 799801 - 801243 1575 480 aa, chain - ## HITS:1 COG:STM1888 KEGG:ns NR:ns ## COG: STM1888 COG0469 # Protein_GI_number: 16765230 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Salmonella typhimurium LT2 # 1 480 1 480 480 867 97.0 0 MSRRLRRTKIVTTLGPATDRDNNLEKIIAAGANVVRMNFSHGSPEDHKMRADKVREIAAK LGRHVAILGDLQGPKIRVSTFKEGKVFLNVGDKFLLDANLGKGEGDKEKVGIDYKGLPAD VVPGDILLLDDGRVQLKVMEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKA DIVTAAQISVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCDQNAMDDII LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAE VMDVANAVLDGTDAVMLSAETAAGQYPAETVAAMARVCLGAEKIPSINVSKHRLDVQFDN VEEAIAMSAMYAANHLKGVTAIIAMTESGRTALMTSRISSGLPIFAMSRHERTLNLTSLY RGVTPVHFDSETDGVVAANEAVNLLRDKGYLVSGDLVIVTQGDVMSTIGSTNTTRILTVE >gi|283548478|gb|GG730299.1| GENE 728 801352 - 802245 716 297 aa, chain - ## HITS:1 COG:STM1887 KEGG:ns NR:ns ## COG: STM1887 COG1737 # Protein_GI_number: 16765229 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 9 297 1 289 289 510 94.0 1e-144 MTHELTCIMNMLEKIQLKLEHLSKSERKVADIILASPDSAIHSSIAALALEANVSEPTVN RFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVDEDDSVESYTGKIFESAMASLDHVRQS LDNTAVNRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVIYSDDIVLQRMSCMN CSDDDVIVLISHTGRTKSLVELAQLARENDAMVIALTSPGTPLAREATLAITLDVPEDTD IYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKELLIKSDDR >gi|283548478|gb|GG730299.1| GENE 729 802590 - 804065 1813 491 aa, chain + ## HITS:1 COG:STM1886 KEGG:ns NR:ns ## COG: STM1886 COG0364 # Protein_GI_number: 16765228 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 491 1 491 491 994 97.0 0 MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQINPETRIIGVGRADWDKAAYTK VVREALETFMKEKIDEGLWETLSGRLEFCNLDVNDTAAFSRLGEMLDQKSRTTINYFAMP PSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSREINDQVGEYFEECQVYRIDHYLG KETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDQAGQMRDMIQNHL LQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGQKVPG YLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLF RESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADA YERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMI TRDGRSWNEFE >gi|283548478|gb|GG730299.1| GENE 730 804300 - 806111 1785 603 aa, chain + ## HITS:1 COG:ECs2561 KEGG:ns NR:ns ## COG: ECs2561 COG0129 # Protein_GI_number: 15831815 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli O157:H7 # 1 603 1 603 603 1165 95.0 0 MNPNLLRVTQRIIERSRDTRSAYLARIEQAKSTTVHRSQLACGNLAHGFAACQPDDKASL KSMLRNNIAIITSYNDMLSAHQPYEHYPAIIRQALHEANAVGQVAGGVPAMCDGVTQGQD GMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLVMAALSFGHLPSIFIPSGP MASGLANKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQ LPGSSFVHPDAPLREALTAAAARQVTRLTGNGNEWMPIGKMIDEKVVVNGIVALLATGGS TNHTMHLVAMARAAGILINWDDFSDLSDIVPLMARLYPNGPADINHFQAAGGVPVLMREL LNAGLLHEDVNTVAGFGLSRYTMEPWLNNGELDWREGAAKSLDSNVIASFDQPFSHHGGT KVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVLPAFDAGLLDRDCVVVVRHQGPK ANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRD GDIIRVNGQTGELTLLVDEEELASRQPHIPDLSASRVGTGREMFSALREKLSGAEQGATC ITF >gi|283548478|gb|GG730299.1| GENE 731 806146 - 806787 1016 213 aa, chain + ## HITS:1 COG:STM1884 KEGG:ns NR:ns ## COG: STM1884 COG0800 # Protein_GI_number: 16765226 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Salmonella typhimurium LT2 # 1 213 1 213 213 380 98.0 1e-106 MKNWKTSAEAILTTGPVVPVIVVNKLEHAVPMAKALVAGGVRVLEVTLRTACAMDAIRAI AKEVPDAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGSIPLIPGISTVSE LMLGMDYGLKEFKFFPAEANGGTKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLC IGGSWLVPADALEAGDYDRITKLAREAVEGAKQ >gi|283548478|gb|GG730299.1| GENE 732 806889 - 808067 1082 392 aa, chain - ## HITS:1 COG:purT KEGG:ns NR:ns ## COG: purT COG0027 # Protein_GI_number: 16129802 # Func_class: F Nucleotide transport and metabolism # Function: Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) # Organism: Escherichia coli K12 # 1 392 1 392 392 690 90.0 0 MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYPDAPAMHVAHRSYVIN MLDGAALRQVVEREKPHYIVPEIEAIATDMLVKLEQEGQHVVPCARATQLTMNREGIRRL AAEDLSLPTSSFRFADSETRFREAVAEIGYPCIVKPVMSSSGKGQSFIRSADQLAEAWSY AQQGGRAGAGRVIVEGVVNFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESWQPQQMS DLALARAQEIARKVVLALGGYGLFGVELFVCGDEVIFSEVSPRPHDTGMVTLISQDLSEF ALHVRAFLGLPVGAIRQYGPSASAVILPQLTSQNVTFDNVQATVGAGLQVRFFGKPEIDG SRRLGVVLATADSIEDAVERAKHAAAQVKVAG >gi|283548478|gb|GG730299.1| GENE 733 808200 - 808490 385 96 aa, chain + ## HITS:1 COG:STM1882 KEGG:ns NR:ns ## COG: STM1882 COG3141 # Protein_GI_number: 16765224 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 96 1 96 96 125 84.0 2e-29 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLEQSPVALEDEQREALSLW LAEQKDVLSAILKNGKLPAPQAVENDAHAEDDTQAA >gi|283548478|gb|GG730299.1| GENE 734 808612 - 808965 381 117 aa, chain + ## HITS:1 COG:no KEGG:EcHS_A1939 NR:ns ## KEGG: EcHS_A1939 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_HS # Pathway: not_defined # 1 115 1 116 118 171 79.0 1e-41 MYKKRALLSLLLLSASVSVFAANMESKNVQFPKCEGLDADGIAASVKRDYQQNRIARWAD DQKRVGQADPVAWVNTPDITGKDGKWTVPLTVRGKSADIHYRVKVDCKAGTAEYQPQ >gi|283548478|gb|GG730299.1| GENE 735 809060 - 809719 801 219 aa, chain + ## HITS:1 COG:STM1880 KEGG:ns NR:ns ## COG: STM1880 COG2979 # Protein_GI_number: 16765222 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 349 91.0 2e-96 MANWLNQLQSLLGQKGSSASSSGEQGLSKLLVPGALGGLAGLLVANKSSRKLLSKYGTSA LLMGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTERLILALVFAAKSDGHID AKERTAIEQQLREAGVEEQGRVLIERAIEQPLDPQRLAQGIRNEEEALEIYFLSCAAIDI DHFMERSYLNALGDALKIPQDVRDGIEQDLKAQKQALPG >gi|283548478|gb|GG730299.1| GENE 736 809806 - 811881 2156 691 aa, chain + ## HITS:1 COG:STM1879 KEGG:ns NR:ns ## COG: STM1879 COG1770 # Protein_GI_number: 16765221 # Func_class: E Amino acid transport and metabolism # Function: Protease II # Organism: Salmonella typhimurium LT2 # 1 680 1 680 683 1265 89.0 0 MLPKASRIPHAMTQHGDTRVDNYYWLRDDTRSQPDVLDYLQQENAYGHQVMASQQALQDR VLKEIIDRIPPQDASAPYVKNGYRYRHIYQPGCEYAIYQRQSAFSEEWDEWDTLLDGNQR AAHSEFYTLGGLAISPDNTIMALAEDYLSRRQYGVRFRNLQSGNWYPEVLDNVEADLVWA NDSQTFYYVRKHATTLLPYQVWRHTVGSPSSQDELVYEEADDMFYVSLHKTTSLHYVVVH IASATTSEVLLLDAELADAEPLLFLARRKDHEYSLDHYQHKFYLRSNREGKNFGLYRTRV RDEQAWEVLIPPRENVMLEGFTLFTDWLVVEERQQGLTSLRQINRKTREVIGIAFDDPAY VTWLAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHVW ITVRDGTEVPVSLVYHQKYFLKGKNPLLVYGYGSYGASMDADFSSSRLSLLDRGFVYAIA HVRGGGELGQQWYEDGKFLHKKNTFNDYLDVCDALLKMGYGAPSLCYGMGGSAGGMLMGV AINERPDLFHGVIAQVPFVDVLTTMLDESIPLTTGEFEEWGNPQDPQYYAYMKSYSPYDN VTAQDYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDRLLLLCTDMDSGHGGKSGRFK SYEGVALEYAFLIGLAQGTLSGQASAQALSK >gi|283548478|gb|GG730299.1| GENE 737 811863 - 812525 411 220 aa, chain - ## HITS:1 COG:exoX KEGG:ns NR:ns ## COG: exoX COG0847 # Protein_GI_number: 16129797 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 1 219 1 219 220 433 92.0 1e-121 MLRIIDTETCGLQGGIVEIASVDVVDGKIVNPMSNLVRPDRPISPQAMAIHRITEAMVAD KPWIEDIIPQYYGSDWYVAHNASFDRRVLPEMPGEWICTMKLSRRLWPGIKYSNMALYKS RKLSVQTPAGLHHHRALYDCYITAALLIDIMQTSGWTAEQMVDITGRPALLTTFTFGKYR GKPVSEVAERDPGYLRWLFNNLDSMSPELRLTLKHYLDNA >gi|283548478|gb|GG730299.1| GENE 738 812548 - 813204 217 218 aa, chain - ## HITS:1 COG:STM1877 KEGG:ns NR:ns ## COG: STM1877 COG0388 # Protein_GI_number: 16765219 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 1 218 1 218 218 334 76.0 7e-92 MSHWKIAAAQYEPLHTSVSENVAHHLQFIQAAAQCQCELLVFPALSLLGCVDENDSLPAP PDEALLEPLAHAAATYRMTIIAGLPVEHNNRFVKGIALFSPWMTSPLTFHQSHGACIARQ RNAISVVDSQPEGIDIDPTFSLFTSSQSVSEPELLSSTSRLQRFSHKFAIAVLMANARGS SALWDERGQLIVRADSGSLLLTGQRTPRGWQGDIIPLR >gi|283548478|gb|GG730299.1| GENE 739 813310 - 813540 285 76 aa, chain - ## HITS:1 COG:no KEGG:EFER_1231 NR:ns ## KEGG: EFER_1231 # Name: not_defined # Def: DNA polymerase III subunit theta # Organism: E.fergusonii # Pathway: Purine metabolism [PATH:efe00230]; Pyrimidine metabolism [PATH:efe00240]; Metabolic pathways [PATH:efe01100]; DNA replication [PATH:efe03030]; Mismatch repair [PATH:efe03430]; Homologous recombination [PATH:efe03440] # 1 76 30 105 105 128 90.0 9e-29 MNINLAKLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRDWFRERLIAHR LASVSLSRLPYEPKVK >gi|283548478|gb|GG730299.1| GENE 740 813684 - 814058 311 124 aa, chain + ## HITS:1 COG:STM1875 KEGG:ns NR:ns ## COG: STM1875 COG2372 # Protein_GI_number: 16765217 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Salmonella typhimurium LT2 # 1 124 1 124 124 149 76.0 1e-36 MASSASSLRNALIVLASLLAAPAALAHAHLTKQSPAANAEVTASPQALTLNFSEGVEPAF SGATLTGPQKETIKTGKATRSDRDKTQLIIPLTQTLEAGKYTVDWHVVSVDGHKTKGQYT FSVK >gi|283548478|gb|GG730299.1| GENE 741 814062 - 814931 795 289 aa, chain + ## HITS:1 COG:STM1874 KEGG:ns NR:ns ## COG: STM1874 COG1276 # Protein_GI_number: 16765216 # Func_class: P Inorganic ion transport and metabolism # Function: Putative copper export protein # Organism: Salmonella typhimurium LT2 # 1 289 2 291 291 358 71.0 5e-99 MLAFTWVALRFIHFATLMLVFGCALYGAWLAPVSVRRLMMRRFLRLQRHAAAWSFISATL MLAIQGGLMGSGWRDVVSTDVWGAVLQTQFGGIWLWQIILAMVTFVMTIIVPRNLSRLLV LLTIAQFILLAGVGHATLHSGVPGVIQRVNHALHLVCAAAWFGGLLPVLYCMRMAQGRWR DQAISTMMRFSRYGHLFVTGVLLTGIVNALFIVGVSGSWHMAYGQLLLLKGVLVMLMVAI ALANRYVLVPRMQDNDCMTLYFIWMTKLEWGIGAVVLAIVSLFATLEPF >gi|283548478|gb|GG730299.1| GENE 742 814952 - 815290 336 112 aa, chain + ## HITS:1 COG:no KEGG:ROD_18781 NR:ns ## KEGG: ROD_18781 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 112 1 112 112 190 86.0 1e-47 MKKIIISLLLLASSGAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRAGNALYVINPST LVQYPLNDVARQQVESGKTTAKPIEIIQIDDPAKPGEKMSLAPFVERAEKLC >gi|283548478|gb|GG730299.1| GENE 743 815866 - 816132 196 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085241|ref|ZP_06570989.1| ## NR: gi|291085241|ref|ZP_06570989.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 88 1 88 88 171 100.0 2e-41 MGGLAVALIATVAELVVLIFPGQAAPSAPPVIYHMLKCKEIAPTDVDSADDLSRKISDLT EHSDRATSVYCIIGSKSGEWDIYNGYEG >gi|283548478|gb|GG730299.1| GENE 744 816405 - 817046 477 213 aa, chain + ## HITS:1 COG:STM1853 KEGG:ns NR:ns ## COG: STM1853 COG0639 # Protein_GI_number: 16765194 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Salmonella typhimurium LT2 # 1 213 1 216 216 298 66.0 3e-81 MGQPDNIYQRVEGTNWRHVWVVGDLHGCFSLLMAKLRQCHFDPWQDLLVSVGDVIDRGPD SMRCLHLLRTRWIVAVRGNHEQMALDALATGEQLSWFMNGGAWFAHAEQPAATLALEACR QLPWILELRCQSGIHVVAHADYPDDDYQWQKEVDLQRVLWDRARLMNKGNGIRGADHFWF GHTPLRHRLDRGNLHYIDTGAVFGGELTLVQLQ >gi|283548478|gb|GG730299.1| GENE 745 817047 - 817262 153 71 aa, chain - ## HITS:1 COG:no KEGG:EFER_1237 NR:ns ## KEGG: EFER_1237 # Name: yebW # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 5 71 25 91 91 116 80.0 3e-25 MALPFEDGMFTLVLFVCYLDGGCEDIVVDVYKTEQQCLVSMDDQRIRNGGCLPADDYIDS FWRPAQEYSDF >gi|283548478|gb|GG730299.1| GENE 746 817342 - 817578 318 78 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A1994 NR:ns ## KEGG: SeSA_A1994 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 78 2 79 79 148 92.0 8e-35 MKTSVRIGAFEIDDAELHGESPGDRTLTIPCKSDPDLCMQLDAWDADTSVPALLNGEHSV LFREHYDRKSDAWIMRLA >gi|283548478|gb|GG730299.1| GENE 747 817679 - 819067 1129 462 aa, chain - ## HITS:1 COG:ZyebU_1 KEGG:ns NR:ns ## COG: ZyebU_1 COG0144 # Protein_GI_number: 15802248 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Escherichia coli O157:H7 EDL933 # 1 368 18 385 385 664 86.0 0 MREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLTLTAPYNWSLTPVPWCAEGFW IERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPERVMDVAAAPGSKTTQI AARMNNHGAILANEFSASRVKVLHANISRCGIANVALTHFDGRVFGAALPETFDAVLLDA PCSGEGVIRKDPDALKNWSVESNLDIAATQRDLLDSAFHALRPGGILVYSTCTLNRDENE NIMQWLIETYPDAVEFLPLGDLFPQAERALTPEGFLHVFPQIYDCEGFFVARLRKTAAIP ALPAPKYKVGNFPFSPLKGRESALITQAANACGLQWEDNLRLWQRDKEIWLFPTEIEPLI GNVRFSRLGVKLAETHNKGYRWQHEAVIALANPNHSHAFELTLAEAEEWYRGRDVYPQTA PTTDDVLVTFQHQPIGLAKRIGSRLKNSYPRDLVRDGKLFTG >gi|283548478|gb|GG730299.1| GENE 748 819180 - 821819 2854 879 aa, chain - ## HITS:1 COG:yebT KEGG:ns NR:ns ## COG: yebT COG3008 # Protein_GI_number: 16129787 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Escherichia coli K12 # 1 879 1 879 879 1605 90.0 0 MHMSQETPASQTEAQIKTKRRISPFWLLPFIALMIAGWLIWGSYEDRGNTVTIDFMSADG IVPGRTPVRYQGVEVGTVQDINLSKDLRKIEVRVSIKSNMKDALRKDTQFWLVTPKASLA GVSGLDALVGGNYIGMMPGTGEPEDHFVALDTQPKYRLNNGDLMLHLRAPDLGSLNSGSL VYFRKIPVGRVYDYTINPNKQGVTIDVLIERRFTNLVKKGSRFWNVSGVDADISLSGAKV KLESLAALVNGAIAFDSPEDSQPAVADDTFGLYQDLAHSQRGVIVKLDLPGGDGLKAGST SLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRDNTRIELHSPKLSLNDTNISSL LTGKTFELIPGEGEPRNQFTVIPAEQSLLHDPGVMTLTLTAPESYGIDAGQPLILHGVQV GQVIERTLSSKGVSFTVAIEPQHRALVQGDSKFVVNSRVDVKVGLDGVEFLGASASEWIS GGIRILPGTKGEMKKSYPLYANLEKAIENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKF EVGEVISVRPRADAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRA LKGAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAAGMPIRYLGI DIGQIQTLELITARNEVQAKAVLYPEYVQTFARSGTRFSVITPQISAAGVEHLDTILQPY INVEPGRGNPRRDFELQEATITDSRYLDGLSIVVEAPEAGSLNIGTPVLFRGIEVGTVTG LTLGSLSDRVMVAMRISQRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGI AFATPPGTPLAPKAQAGKHFLLQESEPKEWREWGTALPR >gi|283548478|gb|GG730299.1| GENE 749 821782 - 822939 701 385 aa, chain - ## HITS:1 COG:ECs2543 KEGG:ns NR:ns ## COG: ECs2543 COG2995 # Protein_GI_number: 15831797 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli O157:H7 # 1 385 43 427 427 681 88.0 0 MRSHQSAFCPRCQAKIRDGRDWSLTRLAAMAVTMLLLMPFAWGEPLLHIFLLGVRIDANV MQGIWQMTRQGDPLTASFVLFCVAGAPIILVTSIAYLWFGNILGMNLRPVLLMLERLKEW VMLDIYLVGIGVASIKVQDYAYLQPGVGLFAFIALVILSILTLSHLNVEQLWDRFYPQRP ARRPDEKLRVCLGCHFTGYPDARGRCPRCHIPLRWRRNQSIQKCWAALLASIVLLLPANL LPISIIYVNGGRQEDTIMSGILSLANSNIGVAAIVFIASILVPFTKVIVMFTLLISIHFN CEQGLRTRIKLLRIVTWIGRWSMLDLFVIALTMSLINRDQILAFTMGPAAFYFGAAVILT ILAVEWLDSRLLWDAHESGNARFAD >gi|283548478|gb|GG730299.1| GENE 750 823194 - 823691 296 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 3 147 6 150 165 118 40 1e-24 MNKSELYTDLNRDFQALMAGETSFLATLANTSALLYERLAQVNWAGFYLLENETLVLGPF QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDAASNAEIVLPITVENQIIG VLDIDSTAFGRFTEEDEEGLRTLVAQLETVLATTDYKKFFASVAG >gi|283548478|gb|GG730299.1| GENE 751 823788 - 824474 604 228 aa, chain + ## HITS:1 COG:proQm KEGG:ns NR:ns ## COG: proQm COG3109 # Protein_GI_number: 16132234 # Func_class: T Signal transduction mechanisms # Function: Activator of osmoprotectant transporter ProP # Organism: Escherichia coli K12 # 1 228 1 232 232 350 92.0 1e-96 MENQPKLNSSKEVIAFLAERFPQCFSAEGEARPLKIGIFQDLVERVEGEMNLSKTQLRSA LRLYTSSWRYLYGVKLGATRVDLDGNPCGELDEQHVEHARKQLEEAKARVQAQRAEQQAK KREAAAAAGEKEDAPRRERKPRPAPRRKEGAERKPRADKPAAKAPRAPREEQHTPVSDIS VLTVGQSLKVKAGNNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF >gi|283548478|gb|GG730299.1| GENE 752 824494 - 826542 2191 682 aa, chain + ## HITS:1 COG:STM1845 KEGG:ns NR:ns ## COG: STM1845 COG0793 # Protein_GI_number: 16765186 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Salmonella typhimurium LT2 # 1 682 1 682 682 1251 95.0 0 MNTFFRLTALAGLLALAGQALAVEDITRADQIPVLKEETQHATVSERVTSRFTRSHYRQF DLDQAFSAKIFDRYLNLLDYSHNVLLASDIEQYAKKKTVLGDELRTGKLDVFYDLYNLAQ KRRFERYQYALSVLARPMDFTGTDTFNLDRSKAPWPKSEAELNALWDGKVKFDELSLKLT GKTDAEIRETLTRRYKFAIRRLVQTNSEDVFSLAMTAFAREIDPHTNYLSPRNTEQFNTE MSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISVGDRIVGVGQTGKGMVDVIGWRL DDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRERIRLEDRAVKMSVKTVGKEKVGVL DIPGFYVGLTDDVKVQLQKLEKQNVSSVVIDLRTNGGGALTEAVSLSGLFIPSGPVVQVR DNNGKVREDSDTDGVVYYKGPLVVLVDRFSASASEIFAAAMQDYGRALIVGEPTFGKGTV QQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRVNGGSTQRKGVTPDIIMPTGNEETETG EKFEDNALPWDSIDAATYTKSDNLTPFGPELLKEHNARIANDPEFQYIMKDIARFNAMKD KRSIASLNYAQREKENNEDDALRLARINDRFKREGKPPLKKLDDLPKDYQEPDPYLDETV KIALDLAHLEKEKPAEQPANSQ >gi|283548478|gb|GG730299.1| GENE 753 826735 - 827616 904 293 aa, chain + ## HITS:1 COG:STM1844 KEGG:ns NR:ns ## COG: STM1844 COG0501 # Protein_GI_number: 16765185 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Salmonella typhimurium LT2 # 1 293 1 293 293 543 98.0 1e-154 MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGFGGSFISLLMSKWMALK SVGGEVIEQPRNERERWLMNTVANQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAV STGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNTFVIFISRILAQIAAGFMGG NRDEGEGSNGNPLIYFAVATVLELVFGILASIITMWFSRHREFHADAGSAKLVGREKMIA ALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTHPPLDKRIEALRSGEYLK >gi|283548478|gb|GG730299.1| GENE 754 827660 - 829033 1039 457 aa, chain - ## HITS:1 COG:yebQ KEGG:ns NR:ns ## COG: yebQ COG0477 # Protein_GI_number: 16129782 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 457 38 494 494 693 90.0 0 MEKIQADGLPLPLRYGAILTVVIGISMAVLDGAIANVALPTIATDLQASPASSIWVVNAY QIAIVVSLLSLSFLGDMFGYRRIYKCGLVVFLLASLFCALSDSLEMLTLARVAQGFGGAA LMSVNTALIRLIYPQRQLGRGMGINSFIVAVSSAAGPTIAAAILSISSWKWLFLINVPLG IIALLLAMRFLPPNSSRSNKPRFDLPSAVMNALTFGLLITALSGFAQGQSLKLIGAELVG LIVVGFFFIRRQLALPVPLLPVDLLRIPLFSLSICTSICSFSAQMLAMVSLPFFLQTVLG RSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGMAVMASGLFSLVLLPSSPSD LNIIWPMMLCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSTGAALVALML NHFGDSGTHVSLITASILASLAAIVSGLRITQPRVQA >gi|283548478|gb|GG730299.1| GENE 755 829209 - 830000 981 263 aa, chain + ## HITS:1 COG:STM1842 KEGG:ns NR:ns ## COG: STM1842 COG1414 # Protein_GI_number: 16765183 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 263 1 263 263 472 94.0 1e-133 MAIADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGY VAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETVHLGALDEDSIVY IHKIDSMYNLRMYSRVGRRNPLYSTAIGKVLLAWRDRDEVKEILDGIEYKRSTDRTITNT DELLVLLDKVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLHE YVAMLHTAARKISEQMGYNDYPF >gi|283548478|gb|GG730299.1| GENE 756 830115 - 830354 183 79 aa, chain - ## HITS:1 COG:no KEGG:CKO_01148 NR:ns ## KEGG: CKO_01148 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 79 18 96 96 131 91.0 7e-30 MRLIIRAIVLLALVWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTNSGL IGLSDCPLLRKSTVVIDNG >gi|283548478|gb|GG730299.1| GENE 757 830737 - 831021 209 94 aa, chain + ## HITS:1 COG:no KEGG:EFER_1250 NR:ns ## KEGG: EFER_1250 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 94 1 95 95 126 82.0 2e-28 MNEVLNSGALSFASLAVSVVVLVVGLVLWFFINRASSRTNEQIELLEALLDQQKRQNALL RRLCEANEPEKAAEPAAVAAKDEDDDIIRLVAER >gi|283548478|gb|GG730299.1| GENE 758 831832 - 832041 324 69 aa, chain + ## HITS:1 COG:ECs2533 KEGG:ns NR:ns ## COG: ECs2533 COG1278 # Protein_GI_number: 15831787 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 120 100.0 5e-28 MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG PAAVNVTAI >gi|283548478|gb|GG730299.1| GENE 759 832261 - 834006 1373 581 aa, chain + ## HITS:1 COG:STM1836 KEGG:ns NR:ns ## COG: STM1836 COG0768 # Protein_GI_number: 16765177 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Salmonella typhimurium LT2 # 1 579 1 579 581 1092 91.0 0 MKKKNDIDARNFTPVRFALLCVAILLSLGLLLGRVAWLQIVTPTNLVKQEDMRSLREVTI DSPRGMIIDREGRPLAVSVPVNAVWADPKTIISKGGVGYNERWQALAKTLNISLSSLAER VNSNPAGRFIYLARQISPQQAEWVDKLNLPGINLREESRRFYPAGHVAANLIGFTNIDGQ GIEGVEKSFNSQLMGKPGSRLVRKDKFGHVIENITEVMPVPAHELQLSIDERLQTVTEDA LDNAVTWNKAESGAAVLVNIATGEILSMASFPDFNPNNRDGAVLDDFRNRAISDTFEPGS TVKPLVIMTALQQGIVQPDSVIDTHPFNLDGHRIRDVGFYPELSLTGILQKSSDTGVSHL SLAMPVQKLLDTYKRFGFGEPTGLGLTGESSGLMPQRRYWSDLDRATFAFGYGLMVTPLQ LAHVYATIGSFGIYRPLSITRIDPPVIGTRVMPEELVHQVEHMMESVALPGGGGTKAAVR DYRVAVKTGTAKKIGDDGKYVDKYVAYTAGVAPASNPKFALVVVINNPQNGAYYGGAVSA PVFSQIMGDVLRLENVKPDGMPADSDHLLVMHGNNVSSPVR >gi|283548478|gb|GG730299.1| GENE 760 834070 - 834879 690 269 aa, chain + ## HITS:1 COG:rrmA KEGG:ns NR:ns ## COG: rrmA COG0500 # Protein_GI_number: 16129776 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli K12 # 1 267 1 267 269 471 82.0 1e-133 MSFSCPLCHQPLTQTKNSFICPERHQFDVAKEGYVNLLPVQHKRSRDPGDSAEMMQARRA FLDAGHYQPLRDAIVNVLAETLSTDNAAILDIGCGEGYYTHAFADTLTGGKTVGLDVSKV AIKAAARRYPQVTFCVASSHRLPFADASMDAIIRIYAPCKAQELARVVKPGGWVITATPG PRHLMELKGLIYDEVRLHAPHAEQLDGFILRQSIALGYQMQLKGSEAVALLQMTPFAWRA KPDVWETLAGKTTFDCQTDFSLHIWQRLN >gi|283548478|gb|GG730299.1| GENE 761 834876 - 835442 584 188 aa, chain - ## HITS:1 COG:ECs2531 KEGG:ns NR:ns ## COG: ECs2531 COG1971 # Protein_GI_number: 15831785 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 188 19 206 206 302 90.0 2e-82 MNLTATVFLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML ASKFVLEWNHWIAFILLIFLGGRMIIEGFRDNGDEDEEPPRRHGFWLLVTTAIATSLDAM AVGVGLAFLKVNIIATALAIGCATLMMSTLGMMIGRFIGPMLGKRAEILGGVVLIGIGAQ ILWAHFHG >gi|283548478|gb|GG730299.1| GENE 762 835875 - 836333 452 152 aa, chain - ## HITS:1 COG:STM1833 KEGG:ns NR:ns ## COG: STM1833 COG4811 # Protein_GI_number: 16765174 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 152 1 152 156 241 86.0 5e-64 MTITDLVLVLFILSLLAYAIYDQFIMPRRNGPALLTIALLPRSRVDSVIFIGLVAILIYN NITSHGAQFTTWLLCALVLMGLYLFWIRTPKIIFKQKGFFFANVWIEYNRIKEMNLSEDG VLVMQLEQRKLLVRVRNIDDLEKIYKLLISNQ >gi|283548478|gb|GG730299.1| GENE 763 836394 - 837245 1091 283 aa, chain - ## HITS:1 COG:STM1832 KEGG:ns NR:ns ## COG: STM1832 COG3716 # Protein_GI_number: 16765173 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 1 282 4 285 286 526 98.0 1e-149 MVDMTKTTTEKKLTPSDIRGVFIRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNDA RKQAIKRHLEFFNTHPYVAAPVLGVTLAMEEQRANGAEIDDGAINGIKVGLMGPLAGVGD PIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYGYRKGVDIVKDM GGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSTITGQDGQTRVTTVQTILDQLMP GLVPLLLTFACMWLLRKKVNPLWIIVGFFIIGIAGYAVGLLGL >gi|283548478|gb|GG730299.1| GENE 764 837258 - 838058 1019 266 aa, chain - ## HITS:1 COG:ECs2528 KEGG:ns NR:ns ## COG: ECs2528 COG3715 # Protein_GI_number: 15831782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1 266 1 266 266 377 93.0 1e-104 MEITTLQIVLVFIVACIAGMESVLDEFQFHRPLVACTLIGAVLGDMKTGIIIGGTLEMIA LGWMNIGAAVAPDAALASIISTVLVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAF QHAADKAAENGNLTALSWLHVSSLFLQAMRIAIPAVIVAISVGTSEVQSMLNAIPEVVTG GLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAAFTNFNLVALGVIGAVMAILYIQ LSPKYNRVAGAPVQAAGNNDLDNELD >gi|283548478|gb|GG730299.1| GENE 765 838117 - 839079 1209 320 aa, chain - ## HITS:1 COG:ECs2527_2 KEGG:ns NR:ns ## COG: ECs2527_2 COG3444 # Protein_GI_number: 15831781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 156 318 1 163 166 293 93.0 3e-79 MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTSK GVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETFMARDDNPSFDELVALAVE TGSEGVKALKAKPVEKAAPAPVAAPKAAAPAKPMGPNDYMQIGLARIDDRLIHGQVATRW TKETNVTRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGERVML LFTNPTDVERIVEGGVKITSVNIGGMAFRQGKTQVNNAISVDEKDIEAFRKLNERGIELE ARKVSTDQKLKMMDLIAKAK >gi|283548478|gb|GG730299.1| GENE 766 839539 - 841098 1967 519 aa, chain + ## HITS:1 COG:yoaE_2 KEGG:ns NR:ns ## COG: yoaE_2 COG1253 # Protein_GI_number: 16129770 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Escherichia coli K12 # 231 519 1 288 288 482 89.0 1e-136 MELLMDPQIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALIMRLG LLSVISWMVTLTKPLFTVMDYAFSGRDLIMLLGGIFLLFKATTELHERLENREHDTGQTK GYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVN QHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAIGFSIIIELFNQIARRNFIRHQS ALPLRARTADAILRLMGGKRQASAQMESDNPVPVPVPEGAFVEEERYMINGVLSLASRSL RGIMTPRGEISWVDADLSVAEIREQLLSSPHSLFPVCRGELDEIIGIVRAKELLVALEDG VDVAAIASASPAIVVPETLDPINLLGVLRRARGSFVIVTNEFGVVQGLVTPLDVLEAIAG EFPDADETPEIIADAGGWLVKGGTDLHALQQALDVDTLVDEDEDIATVAGLVIAANGHIP RVGDVIEVAPLSITIVEANDYRVDLVRIVKEQPSHDEDE >gi|283548478|gb|GG730299.1| GENE 767 841105 - 842568 1076 487 aa, chain - ## HITS:1 COG:yoaD_2 KEGG:ns NR:ns ## COG: yoaD_2 COG2200 # Protein_GI_number: 16129769 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 215 487 1 272 272 473 82.0 1e-133 MTFAHHAVEELDNVLLPLLAGRDMLLPLIGLPCSVARLPLSKQAARLQTVRSINLIQRGI LYCSSIFGYRNVPIRQLQAELPSQEPLLLLSTDHSIIKGSPILTQWYPSSADGEDGILEI VNIELLASMLLEPQPPQITNASLTVGNRHLLYGQGVVDTLPELNNEKRYQLSSQHFPFTV SVTGPGASELAIKHLPTQVPLAVILSLLVGYLAWLATANRMSFSWEINLALAAHEFELFC QPLLNAQTQQCMGVEILLRWDNPRQGWIPPEVFIPIAEEHNLIVPLTRHVIAETIQQRHV FPMSSQFHIGINVAASHFRHGTLLKDLNQYWFSQHPIQQLVIELTERDALLDVDYRLVRE LNRLGVKLAIDDFGTGNSSLSWLEKLRPDVLKIDKSFTSAIGTDAVNSTVTDIIIALGKK LNIELVAEGVETQAQAQHLRRHGVHLLQGFLYAKPMPLRDFPKWLAGSTPPPTRHNGRHS MPVMPFR >gi|283548478|gb|GG730299.1| GENE 768 842837 - 844201 1503 454 aa, chain - ## HITS:1 COG:STM1826 KEGG:ns NR:ns ## COG: STM1826 COG1760 # Protein_GI_number: 16765167 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Salmonella typhimurium LT2 # 1 454 1 454 454 890 95.0 0 MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGH HTDIAIIMGLAGNEPATVDIDSIPGFIRDVEARGRLLLAQGQHEVDFPQNDGMRFHNGNL PLHENGMQIHAYNGENVIYSKTYYSIGGGFIVDEEHFGQDAANEVCVPYPFKSATEMLEY CSSTGLSLSGMVMQNELALHSKKEIDEYFGNVWQTMQACIDRGMNTEGVLPGPLRVPRRA SALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY DHFIESVSPDIYTRYFLAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMAMRRTSAPRVS LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD >gi|283548478|gb|GG730299.1| GENE 769 844385 - 844963 494 192 aa, chain - ## HITS:1 COG:STM1825 KEGG:ns NR:ns ## COG: STM1825 COG0494 # Protein_GI_number: 16765166 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Salmonella typhimurium LT2 # 1 192 1 192 192 330 89.0 7e-91 MEYSSLTLDDFLSRFQLLRPQVNHAALNQRQAAVLIPVVRRPQPGLLLTQRSVHLRKHAG QVAFPGGAVDSSDASLIAAALREAHEEVAIPPSCVEVIGVLPPVDSVTGFQVTPVVGIIP PNLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDSHRVWLSWYEQYFVWGMTAGI IRELALQIGVKP >gi|283548478|gb|GG730299.1| GENE 770 844967 - 846328 983 453 aa, chain - ## HITS:1 COG:pabB KEGG:ns NR:ns ## COG: pabB COG0147 # Protein_GI_number: 16129766 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Escherichia coli K12 # 1 452 1 452 453 751 80.0 0 MKTLSPAVITLPWRQDAAERYFSTLSHLPWAMLLHSGHADHPHNRFDILVADPIATLVTY GEETVVHDGHATTRTLDDPMTVLHSALSARGIRPGYHPDLPFQGGALGLFGYDLGRRFES LPTIADRDIALADMVVGIYDWALIVDHQLQTVSLLSHSDVEARRKWLDAQQPPMAEPFTL TSAWQSNMSRAQYGEKFRQVQRYLHSGDCYQVNLGQRFQAHYQGDEWQAFVRLNHANRAP FSAFIRLEAGAILSLSPERFIQLENQHIQTRPIKGTLPRLDNPDADRQQALKLANSPKDR AENLMIVDLMRNDIGRVAVPGSVQVPELFVVEPFPAVHHLVSTITAHLPETLHATDLLRA AFPGGSITGAPKVRAMEIIDELEPHRRNAWCGSIGYMSFCGNMDTSITIRTLTAVDGQIY CSAGGGIVADSQEDAEYQETFDKVNRILHQLEN >gi|283548478|gb|GG730299.1| GENE 771 846412 - 846591 327 59 aa, chain + ## HITS:1 COG:ECs2520 KEGG:ns NR:ns ## COG: ECs2520 COG3140 # Protein_GI_number: 15831774 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 59 1 59 59 79 93.0 2e-15 MFAGLPSLSHEQQQKAVERIQELMSQGMSSGQAIALVAEELRASHTGERIVARFEDEDE >gi|283548478|gb|GG730299.1| GENE 772 846598 - 846942 520 114 aa, chain - ## HITS:1 COG:yoaB KEGG:ns NR:ns ## COG: yoaB COG0251 # Protein_GI_number: 16129763 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1 114 17 130 130 207 97.0 3e-54 MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSRI LDATLFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIIAAV >gi|283548478|gb|GG730299.1| GENE 773 847084 - 848994 1853 636 aa, chain + ## HITS:1 COG:STM1821 KEGG:ns NR:ns ## COG: STM1821 COG1199 # Protein_GI_number: 16765162 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Salmonella typhimurium LT2 # 1 636 1 636 636 1223 96.0 0 MTDDFAADGQLAKAIPGFKPREPQRQMAFAVSHAIEKSQPLVVEAGTGTGKTYAYLAPAL RAGKKVIVSTGSKALQDQLYSRDLPTVAKALEFTGKLALLKGRSNYLCLERLEQQALAGG DLPVQTLSDVILLRSWSNQTLDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPLYKECF VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA DQRVQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRARLKRLKEINQPGFSYW YECTSRHFTLALTPLTVADKFKEVMEQKPGCWIFTSATLSVNDDLHHFTARLGIDDAESM LLPSPFDYTRQALLCVPRNLPQTNQPGAARQLASMLRPIIEANNGRCFMLCTSHAMMRDL AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL PFTSPDDPLLKARMEDCRLRGGDPFEEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPTTE >gi|283548478|gb|GG730299.1| GENE 774 849173 - 849748 591 191 aa, chain + ## HITS:1 COG:yeaZ KEGG:ns NR:ns ## COG: yeaZ COG1214 # Protein_GI_number: 16129761 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Escherichia coli K12 # 1 191 41 231 231 309 84.0 2e-84 MVQEILAAGELALSDIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQ GAWRKNGATRVLAAIDARMGEVYWAEYQRDESGNWHGEETEAVLTPEQVHERLLQLSGEW VTVGTGWPAWPELGKDSGLTLSDGDVLLPAAEDMLPVAAQMLAAGKTVAVEHAEPVYLRN TVAWKKLPGKE >gi|283548478|gb|GG730299.1| GENE 775 849836 - 850420 743 194 aa, chain + ## HITS:1 COG:STM1819 KEGG:ns NR:ns ## COG: STM1819 COG3065 # Protein_GI_number: 16765160 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Salmonella typhimurium LT2 # 1 194 1 193 193 336 88.0 1e-92 MAVQKQLVKGVLAGVLALMLSGCVTIPDAIKGSSPTPQQDLVRVMNAPQLYVGQEARFGG KVVDIQNQQGKSRLEIATVPLDSGARPVLGEASRGRIYADVSGFLDPVDFRGQLVTVVGP ISGTVDGKIGSTPYKFMLMQVTGYKRWHITQQIVMPPQPIDPWFYGARGWPYGGYGGWGW YNPGPAQVQTIVTE >gi|283548478|gb|GG730299.1| GENE 776 850559 - 852310 1882 583 aa, chain + ## HITS:1 COG:STM1818 KEGG:ns NR:ns ## COG: STM1818 COG0318 # Protein_GI_number: 16765159 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 23 583 1 561 561 1107 95.0 0 MLTICLLPGVVMTTNMHFRGDVLKKVWLNRYPAGVPAEINPDRYQSLVELFEHSVRRYAD QPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAG MIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTSVQHVILTRMGDQLST AKGTLVNFVVKYIKRLVPKYHLPDAISFRSALQNGYRMQYVKPEVVSEDLAFLQYTGGTT GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTMNCLLFIELGGQ NLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQ QAVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEVKLVDDDDNE VPPGEPGELCVKGPQVMLGYWQRPDATDEIVKDGWLHTGDIAVMDEEGFLRIVDRKKDMI LVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDASLTDDALVTFCR RHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKG >gi|283548478|gb|GG730299.1| GENE 777 852395 - 853510 1292 371 aa, chain + ## HITS:1 COG:ECs2513 KEGG:ns NR:ns ## COG: ECs2513 COG0349 # Protein_GI_number: 15831767 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease D # Organism: Escherichia coli O157:H7 # 1 371 5 375 375 652 88.0 0 MITSDDALATLCEAVREFPAIALDTEFVRTRTYYPQLGLIQLFDGKHVALIDPQGITDWS PLRAILRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLSWGFAAMVEE FTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPITTTLMAETEASGWLPAALDECR LMQQRRQEILAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL WAVARYMPGSLGELDSLGLSGSEIRFHGKTLIALVEKAQALPEASLPQPLLNLMDMPGYR KAFKAIKALVAEVSAEQNLSVELLASRRQINQLLNWHWKLKPQQSLPELISGWRGELMSE RLNALLLEYPQ >gi|283548478|gb|GG730299.1| GENE 778 853558 - 854523 602 321 aa, chain - ## HITS:1 COG:yeaX KEGG:ns NR:ns ## COG: yeaX COG1018 # Protein_GI_number: 16129757 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli K12 # 1 321 1 321 321 505 76.0 1e-143 MSDYQMREVRVDRIERITAQVKRFTLTATSGEPLPAFQGGSHIIVQMRDGKNLYSNAYSL MSSPLDTSAYQIAVRLEEGSKGGSRFLHQNVKPGDTLTISTPNNLFALAPLAQKHLLIAG GIGITPFLSQLPELEHSQAEWQLHYCAPSQKSCAFHDELLQHRSASRIHLHLSSAGTRLD ITRLLADVEPGTHIYTCGPAALNDAVREAASRHGLCSEMLHFEQFAVEDKSGAAFTLVLA RSGREFVVPEEMTILQVIENNKAARVECLCREGVCGTCETTILEGEADHRDQYFSEDEKA SQQSMLICCSRAKGKRLVLDL >gi|283548478|gb|GG730299.1| GENE 779 854595 - 855719 1346 374 aa, chain - ## HITS:1 COG:ECs2511 KEGG:ns NR:ns ## COG: ECs2511 COG4638 # Protein_GI_number: 15831765 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit # Organism: Escherichia coli O157:H7 # 1 374 1 374 374 750 91.0 0 MSNLSPEFILPQNFCANPQDAWTIPARFYTDQQAFEHEQEHVFAKSWICVAHGSELAKPN DYVTREVIGENIVLVRGRDNVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDG NLAHARNCENVANFDSEKAHLTPVRLEEYAGFVFINMDPNAGSVEEQLPGLADKVIEACP EVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQY GFAKPSEQSFKFEEGVDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDAETTLQNYDIY FTNEELTEEQKELIEWYRNVFRPEDLRLVESVQKGLKSRGYRGQGRIMADTSGSGISEHG IAHFHNLVAQVFQE >gi|283548478|gb|GG730299.1| GENE 780 855765 - 857366 1634 533 aa, chain - ## HITS:1 COG:ECs2510 KEGG:ns NR:ns ## COG: ECs2510 COG1292 # Protein_GI_number: 15831764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Escherichia coli O157:H7 # 56 533 1 481 481 822 89.0 0 MLSNVKKKDVPLITISLVAILFIAATLSLFPQQSAQVANTLFNGVTRMLGSAVQILVLMA MGLVVWLATSKYGNIRLGEGKAEYSTLSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLN IAPRSQKALEFSLPYSFFHWGISAWATYTLASLTMAYHFHVRKNKGLSLSGIIAAITGVH PQGVWGRLVDLMFLIATVSALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILFSGGIF CLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNNIINAIGLTTQNFLQMSLF TDPLGNGEFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWALILGSTVGCWFFF GVMESYSIHQFVSGAIDVPQVMATLGGETAVQQVLMSLPAGKLFLVAYLAIMIIFLASHM DAVAYTMAATSTRNLQEGEDPQRSLRLFWCVVITLIPLSILFTGASLETMKTTVVLTALP FLAILLVKVGGFLRWVRQDYAHVPAHQIEDHLPETPVDAPVAPPAGTLLKGDN >gi|283548478|gb|GG730299.1| GENE 781 857622 - 858704 1218 360 aa, chain - ## HITS:1 COG:yeaU KEGG:ns NR:ns ## COG: yeaU COG0473 # Protein_GI_number: 16129754 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1 359 1 359 361 699 91.0 0 MKKTYRIAAIPGDGIGKEVLPEGIHVLRAAAERWGLSLSFEQMEWASCEYYAHHGKMMPD DWREQLQSFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGVPCPLA GKKPGDIDFYVVRENTEGEYSALGGRVSEGTEHEVVIQESVFTRRGVDRILRYAFELAQS RPRKTLTSATKSNGLAISMPYWDERVEAMAAHYPQIRWDKQHIDILCARFVMQPERFDVV VASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIAT IWAGAMMLDFLGNGDASYKAAHNGILAAIEQVIASGPKTPDMKGNATTQQVGEAISRALR >gi|283548478|gb|GG730299.1| GENE 782 858787 - 859725 814 312 aa, chain + ## HITS:1 COG:ECs2508 KEGG:ns NR:ns ## COG: ECs2508 COG0583 # Protein_GI_number: 15831762 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 312 1 312 314 596 90.0 1e-170 MKHKTQIMNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLH RTTRRVTITEEGERIYEWAQRILQDVDQMMDELSDVRQIPQGMLRIISSFGFGRRVVAPA LSALAKECPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPE FVAQHGVPKQLNDLSTFPCLVIKERDHPFGIWQMRNKEGAHSIKVTGPLSSNHGEVVHQW CLDGQGIALRSWWDVCDNIASGHLMHILPEYYQPANIWAVYVSRLATSAKIRITVEYLRR YFAENYPKFTLE >gi|283548478|gb|GG730299.1| GENE 783 859811 - 860077 332 88 aa, chain - ## HITS:1 COG:STM1816 KEGG:ns NR:ns ## COG: STM1816 COG0851 # Protein_GI_number: 16765157 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation topological specificity factor # Organism: Salmonella typhimurium LT2 # 1 88 1 88 88 148 100.0 3e-36 MALLDFFLSRKKSTANIAKERLQIIVAERRRSDAEPHYLPQLRKDILEVICKYVQIDPEM VTVQLEQKDGDISILELNVTLPEAEESK >gi|283548478|gb|GG730299.1| GENE 784 860081 - 860893 933 270 aa, chain - ## HITS:1 COG:ECs1669 KEGG:ns NR:ns ## COG: ECs1669 COG2894 # Protein_GI_number: 15830923 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor-activating ATPase # Organism: Escherichia coli O157:H7 # 1 270 1 270 270 497 97.0 1e-141 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDF VNVIQGDASLNQALIKDKRTENLFILPASQTRDKDALTREGVAKVLDDLKAMDFDFIVCD SPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEDPIKEHLLL TRYNPGRVNKGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYA DTVDRLLGEERPFRFIEEEKKGFLKRLFGG >gi|283548478|gb|GG730299.1| GENE 785 860917 - 861624 445 235 aa, chain - ## HITS:1 COG:STM1814 KEGG:ns NR:ns ## COG: STM1814 COG0850 # Protein_GI_number: 16765155 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation inhibitor # Organism: Salmonella typhimurium LT2 # 1 235 1 235 235 415 91.0 1e-116 MSNTPIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVVNVSGLESPVN WTALQEVVTSTGLRIIGVSGCKDARLKAEIDEMGLPLLTEGKEKTIRPAPVETPVPVTPP QNVTPITKTRLINVPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVYGMMRGRALAG ASGDREAQIFCTHLTAELVSIAGVYWLSDKIPAEFYGKAARLQLAENALTVQPLN >gi|283548478|gb|GG730299.1| GENE 786 861751 - 862044 260 97 aa, chain + ## HITS:1 COG:STM1813 KEGG:ns NR:ns ## COG: STM1813 COG3100 # Protein_GI_number: 16765154 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 97 14 110 110 160 88.0 7e-40 MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPTLAMMLPLDGRKKLVNADLEKV KQALTEQGYYLQIPPPPEDLLKQHLAAAKQNTSDAKR >gi|283548478|gb|GG730299.1| GENE 787 862114 - 862773 835 219 aa, chain + ## HITS:1 COG:STM1812 KEGG:ns NR:ns ## COG: STM1812 COG0179 # Protein_GI_number: 16765153 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 409 89.0 1e-114 MYQHHNWHGALLDYPVSKVVCVGSNYANHIKEMGGTTPEEPVLFIKPETALCDLRQPLAI PSDMGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDIQGKMKKAGQPWEK AKGFDNSCPLSGFIPVAEFTGDPQNTMLGLTVNGETRQHGSTADMIHHIVPLIAYMSRFF TLKAGDVVLTGTPAGVGPLSSGDELAISFHGETLTTRVL >gi|283548478|gb|GG730299.1| GENE 788 862866 - 863312 524 148 aa, chain + ## HITS:1 COG:ECs1676 KEGG:ns NR:ns ## COG: ECs1676 COG2983 # Protein_GI_number: 15830930 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 147 11 157 158 284 93.0 4e-77 MSDIPFWQSKTLDEMTDAEWESLCDGCGQCCLHKLMDEDTDEIYFTNVACKQLNIKTCQC RNYERRFEYEPDCIKLTRDNLPTFEWLPMTCAYRLLAEGKGLPEWHPLLTGSKAAMHGER ISVRHIAVKESEVRDWQEHILNKPSWAD >gi|283548478|gb|GG730299.1| GENE 789 863342 - 863683 373 113 aa, chain - ## HITS:1 COG:STM1808 KEGG:ns NR:ns ## COG: STM1808 COG3615 # Protein_GI_number: 16765149 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein/domain, possibly involved in tellurite resistance # Organism: Salmonella typhimurium LT2 # 1 113 1 113 113 210 89.0 4e-55 MSHLRIPANWKVKRSTPFFTKDNVPAALLSHHNTAAGVFGQLCVMEGTVTYYGFANEDAK EPEVKMVINAGQFATSPPQYWHRVELSDDAQFNINFWVEDDNHGDEMYQAKKS >gi|283548478|gb|GG730299.1| GENE 790 863794 - 864324 441 176 aa, chain - ## HITS:1 COG:STM1807 KEGG:ns NR:ns ## COG: STM1807 COG1495 # Protein_GI_number: 16765148 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond formation protein DsbB # Organism: Salmonella typhimurium LT2 # 1 176 1 176 176 308 93.0 3e-84 MLRFLNQCSRGRGAWLLLALTAFALELVALWFQHVMLLKPCVLCIYERSALFGVMGAGLV GAIAPKTPLRYVAMVIWIYSAWRGLQLAYEHTMIQLHPSPFMTCDFAARFPSWLPLDKWL PQVFVASGDCAERQWSFLTLEMPQWLLGIFAAYLVVAVLVVIAQPFKPKKRDLFGR >gi|283548478|gb|GG730299.1| GENE 791 864459 - 866006 1617 515 aa, chain - ## HITS:1 COG:STM1806 KEGG:ns NR:ns ## COG: STM1806 COG3067 # Protein_GI_number: 16765147 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Salmonella typhimurium LT2 # 1 510 1 510 514 869 93.0 0 MELSWGRAMWRNFLGQSPDWYKLALLVFLVVNPIIFFINPFIAGWLLVAEFIFTLAMALK CYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRL LLSIRSKSLLSLSFCIAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEDNNMLD DSHIDQHNKVVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFL RMSPVTVPVLICGLLTCVLVEKLRWFGYGETLPETVRDVLQQYDDQSRKQRTRQDKIKLI VQAIIGVWLVVALALHLAEVGLIGLSVIILATSLTGVTDEHAIGKAFTESLPFTALLTVF FSVVAVIIDQQLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAL EHGTISLNQYELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALP YTLVLTLVGLLCVEFTLVPLTEWMTQSGWLHFHNN >gi|283548478|gb|GG730299.1| GENE 792 866241 - 866960 768 239 aa, chain + ## HITS:1 COG:STM1805 KEGG:ns NR:ns ## COG: STM1805 COG2186 # Protein_GI_number: 16765146 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 239 1 239 239 477 96.0 1e-135 MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGW LTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQH PEKAQEVLATANQVADHADAFADLDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYF ANPEARGLALSFYRKLSELCEQGAHEQVYETVRRYGHDSGEIWHRMQKNLPGDLAIQGR >gi|283548478|gb|GG730299.1| GENE 793 868359 - 869891 1509 510 aa, chain - ## HITS:1 COG:ECs1683 KEGG:ns NR:ns ## COG: ECs1683 COG2719 # Protein_GI_number: 15830937 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 510 1 510 510 1019 97.0 0 MATIDSMNKDSTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAY SSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM AHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITQCEERYGVDEVEKLLDSCHALM NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKKEEEKTISEARRYPSEPQ ENLLYFMEKNAPLLESWQREVLRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDRYWF PDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRLFTVLDDDRHNYLEISAIHNEE GYREIRSRLSSQYNLSNLEPNIQIWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHR LWGFDVMLEQQNEDGSVELLERCPPRMNGL >gi|283548478|gb|GG730299.1| GENE 794 870214 - 871512 1249 432 aa, chain + ## HITS:1 COG:ECs1684 KEGG:ns NR:ns ## COG: ECs1684 COG0665 # Protein_GI_number: 15830938 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 836 93.0 0 MRVVILGSGVVGVTSAWYLSQAGHEVTVIDREPGPALETSAANAGQISPGYAAPWAAPGV PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK ALRASTGIEYEGRQGGTLQLFRTAQQYENATRDIAVLEDAGVPYQLLEANRLAEVEPALA EVAHKLTGGLRLPNDETGDCQLFTQRLAQMAEQAGVKFRFNTLVDKLLSEGEQIYGVQCG EEIIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYSLTIPVAQDDGAPVSTILDETYKIA ITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLFPRGGHVEQATFWTGLRPMTPD GTPVVGRTRYKNLLLNTGHGTLGWTMACGSGQLLSDILSGRTPAIPYDDLSVARYSPGFT PARPRHLHGAHN >gi|283548478|gb|GG730299.1| GENE 795 871525 - 872595 869 356 aa, chain + ## HITS:1 COG:ZdadX KEGG:ns NR:ns ## COG: ZdadX COG0787 # Protein_GI_number: 15801412 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli O157:H7 EDL933 # 1 356 1 356 356 660 89.0 0 MTRPILASIDLQALKQNLAITRQAAPDARVWSVVKANAYGHGIERVWNALGTTDGFAMLN LEEAITLRERGWKGPILMLEGFFHADDLKVYDKYRLTTCVHSNWQLKALQNARLNAPLDV YLKVNSGMNRLGFLPDRVSTVWQQLRAMPNVGEMTLMSHFADAEHPNGIQEAMTRIAQAT EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLKPVMTLSSEII GIQTLKAGDRVGYGGRYTASGEQRIGIVATGYADGYPRHAPSGTPVLVDGVRTTTVGTVS MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVASAAGTVGYELMCSLALRVPVVTV >gi|283548478|gb|GG730299.1| GENE 796 872701 - 874434 1798 577 aa, chain - ## HITS:1 COG:STM1801 KEGG:ns NR:ns ## COG: STM1801 COG3263 # Protein_GI_number: 16765142 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Salmonella typhimurium LT2 # 1 577 1 577 577 967 92.0 0 MDAAAIISLFILGSVLVTCSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF AYMVSNLALAVILLDGGMRTQASSFRVALGPALSLATVGVLITSGLTGMMAAWLFNLDLI EGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQNHE TALSWMFAVHIIQQFGLGIVLGLGGGYLLQQMINRISLPAGLYPLLALSGGILIFALTTA LEGSGILAVYLCGFLLGNRPIRNRFGILQNFDGLAWLAQIAMFLVLGLLVTPSDLLPIAI PALILSAWMIFVARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLEN ARLFFNVAFFVVLISLLFQGTSLSWAAKKAKVVVPPVGWPVSRIGLDIHPDNPWEQFVYQ LSADKWCVGAALRDLHMPEETRIAALFRDNVLFHPSGSTRLREGDVLCVIGRERDLPALG KLFSQSPPVSLDQRFFGDFILEASAKYADVALIYGLDDGTEYRDKQQTLGEIVQHLLGAA PVVGDQVEFAGMIWTVAEKEDNAVLKVGVRVAEDEDE >gi|283548478|gb|GG730299.1| GENE 797 874532 - 875446 709 304 aa, chain - ## HITS:1 COG:ECs1688 KEGG:ns NR:ns ## COG: ECs1688 COG1619 # Protein_GI_number: 15830941 # Func_class: V Defense mechanisms # Function: Uncharacterized proteins, homologs of microcin C7 resistance protein MccF # Organism: Escherichia coli O157:H7 # 1 303 1 303 304 518 80.0 1e-147 MSRFHLIAPSGYCINQQAALRGLARLTEAGHQVDNSAVIARRCQRFAGTEAERLADVNSL AHLKTPDTIVMAVRGGYGASRLLEGIDWQGLAARQQQNPLLLCGHSDFTAIQCGLLAQGN VITFSGPMLAANFGAEEMNAFTERHFWQALRNPHFTLEWQSEGPECATEGTLWGGNLAML ISLMGTPWMPTIKNGVLVLEDINEHPFRIERMLLQLYHAGILAQQNAIILGSFSGSAPND YDAGYSLDSVCAFLRARLSVPLISGLDFGHEQRTVTLPLGANAMLKNDKNGAQLTISGHP VLKS >gi|283548478|gb|GG730299.1| GENE 798 875419 - 876156 544 245 aa, chain + ## HITS:1 COG:ECs1687 KEGG:ns NR:ns ## COG: ECs1687 COG0741 # Protein_GI_number: 15830942 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli O157:H7 # 13 245 9 241 241 414 87.0 1e-116 MGQLSETGTWHFLATTKTKCISCRVGMSLSPQRQVPAIRIDDVKLRWFAFLVVLLAGCSS KQDYKNPPWNAEVPVKRAMQWMPISEKAGAAWGVSPQLITAIIAIESGGNPNAVSKSNAI GLMQLKASTSGRDVYRRMGWSGEPSTSELKNPERNISMGAAYLSILETGPLAGIEDPQVM QYAVVVSYANGAGALLRTFSSDRKKAINKINDLSPDEFIDYVAENHPAPQAPRYIWKLQQ ALDAM >gi|283548478|gb|GG730299.1| GENE 799 876168 - 876902 587 244 aa, chain - ## HITS:1 COG:STM1798 KEGG:ns NR:ns ## COG: STM1798 COG5581 # Protein_GI_number: 16765139 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted glycosyltransferase # Organism: Salmonella typhimurium LT2 # 1 243 1 243 244 397 81.0 1e-111 MSNYNEQFLKQNPLAVLGVLRDLNSQQVPLRISWSGGQFISKILAVSPDALIMDFGSQEY ENQAVQRASQVTIIAETQGAKVEFTLPQLKKGEYQRLPAFISSLPPSLWFVQRREYFRIG APLHPPYRCTVKMPDNSTLCFRLFDLSLGGMGGLLETAKPEGLVEGMRFSQVELNMEQWG VYHVDAQLISISERKVIDSKNETISTPRLSFRFLNVGPAVERNLQRIIFSLEREAREKAN KVRG >gi|283548478|gb|GG730299.1| GENE 800 877101 - 877355 316 84 aa, chain + ## HITS:1 COG:ymgE KEGG:ns NR:ns ## COG: ymgE COG2261 # Protein_GI_number: 16129158 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 84 1 84 84 100 88.0 8e-22 MGIIAWIVFGLIAGVIAKLIMPGRDGGGFILTCILGIVGAVVGGWLATMFGIGGDVSGFN LHSFLVAVVGAIVVLGVFRLVRRD >gi|283548478|gb|GG730299.1| GENE 801 877400 - 879112 1806 570 aa, chain - ## HITS:1 COG:treA KEGG:ns NR:ns ## COG: treA COG1626 # Protein_GI_number: 16129160 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli K12 # 1 569 1 564 565 922 82.0 0 MITPAIRHPGLLSVAIKLTLASTLFAFTSFAVNAEDMPAATPQPPDILLGPLFNDVQTAK LFPDQKTFADAVPNSDPLMILADYRMQKNQSGFDLRHFVQVNFTLPKDGEKYVPPAGQSL REHIDGLWPVLTRSTTDAEKWDSLLPLPEPYVVPGGRFREIYYWDSYFTMLGLAESNHWD KVSDMVANFAYEIDAWGHIPNGNRTYYLSRSQPPFFAFMVELLAQHDGDDALKKYLPQML KEYSYWMEGVETLQPGQQNKRVVKLDDGIILNRYWDDRDTPRPESWVEDIATAKSNPNRP ATEIYRDLRSAAASGWDFSSRWMDNPNQLGTLRTTSIVPVDLNALMYKMEKMIALASKAA GDDAKAAQYEGFANARQKGIEKHLWNDKEGWYADYDLKSHKVRNQLTAAALFPLYVNAAA KDRASKVATATQAHLLQPGGLATTSVKSGQQWDAPNGWAPLQWVAASGLQNYGQDNVAMD VTWRFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICAK EKPCDSVPASRPAPAGTASAEPKKQTQPTQ >gi|283548478|gb|GG730299.1| GENE 802 879285 - 880715 1272 476 aa, chain - ## HITS:1 COG:ycgC_3 KEGG:ns NR:ns ## COG: ycgC_3 COG1080 # Protein_GI_number: 16129161 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Escherichia coli K12 # 262 474 1 213 215 228 55.0 3e-59 MVNLVIVSHSAQLGEGVGALARQMLMGEGCKLAIAAGIDDPENPIGTDPIKVMEAIESVA DTDHVLVMMDIGSALLSAETALELLAPDIAAKVRLCAAPLVEGTLAATVSAAAGADIDRV VRDAMNALDAKCEQLGLPSPSAAKPASAELSPDADARSISIVVKNPNGIHVRPASRLVST LSGFNADMWLEKNGKCVIPDSLNQIALLQVRCNDTLRLIAKGEQAEDALAAFKQLAAENF GEALEPEQVNNVAAPVPSRATGTAFCYTPFSPAVARQSTAPLQTEAQRLRAAIQSTLNDL SELTALAEEKYSADIAAIFSGHHTLLDDPELLDMACDVMRENQCSAAWAWHQVLSDLSQQ YLQLDDPYLQARYIDIEDILSHSLQHLTGETAQIPAFTHPTILVADVIYPSTVLQLDPLT IKGICLRGGSNASHPAIIAREMGLCWMCQQGEALDGIKTGDAVTLDGVAHKITRAD >gi|283548478|gb|GG730299.1| GENE 803 880726 - 881358 672 210 aa, chain - ## HITS:1 COG:ECs1704 KEGG:ns NR:ns ## COG: ECs1704 COG2376 # Protein_GI_number: 15830958 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli O157:H7 # 1 210 1 210 210 365 88.0 1e-101 MSLTRTQIVNWLYHCGEIFTTESDFLTGLDREIGDADHGLNMHRGFSKVVEKLPSIADKD IGFILKNTGMVLLSSVGGASGPLFGTFFIRAAQVTQAHQSLTLDELYQMIRDGAEGVISR GKAEPGDKTMCDVWLPVVESLRQSCEQNLSVQAALEAASQQAELAAQSTITMQARKGRAS YLGERSIGHQDPGATSVMFMMQMLALASRE >gi|283548478|gb|GG730299.1| GENE 804 881370 - 882440 1371 356 aa, chain - ## HITS:1 COG:ycgT KEGG:ns NR:ns ## COG: ycgT COG2376 # Protein_GI_number: 16129163 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Escherichia coli K12 # 1 356 11 366 366 652 87.0 0 MKKLINRVEDVLHEQLAGLAKAYPSLALHQDPVYVTRADAPVMGKVALLSGGGSGHEPMH CGYIGQGMLAGACPGEIFTSPTPDKMFECAMQIDGGEGVLLIIKNYTGDILNFETATELL HESGIKVTTMVVDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLEACAALGRQL NNQGHSIGIAIGACTVPAAGQPSFTLQDNEMEFGVGIHGEPGIDRRTFTSLDQTVDEMFD TLLENGNYSRTLRHWDNVQGAWLEGKETKRALQNGDRVIALVNNLGATPLSELFGVYNRL ESRCQDAGIVIERNLIGSYCTSLDMTGFSITLLQVDDETLNLWDAPVHTPALNWGK >gi|283548478|gb|GG730299.1| GENE 805 882767 - 884041 1434 424 aa, chain - ## HITS:1 COG:STM1795 KEGG:ns NR:ns ## COG: STM1795 COG0334 # Protein_GI_number: 16765136 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 424 18 441 441 818 95.0 0 MDKLSYASDSSTSAWNTYLQQIERVAPYLGELSHWVDTLRHPKRALIVDIPVQMDDGTIR HFEGYRVQHNLSRGPGKGGVRYHPDVDLNEVMALSAWMTIKCAALNLPYGGAKGGVRVDP FSLSEGELERLTRRYTSEIGIIIGPQKDIPAPDVGTNGKVMAWMMDTYSMNHGTTVTSVV TGKPIHLGGSLGRDKATGRGVFVSGLEVARRANIEVEGARVAVQGFGNVGSEAARLFAAA GARVVAIQDHTATLFNATGIDMSALSAWQLEHKQIAGFPGAETIASEAFWSLEMDILIPA ALEGQITRHRAETLTCKLVLEGANGPTYPDADDVLASRGIVVVPDVVCNAGGVTVSYFEW VQDMASFFWSEEEINNRMDKIMTDAMVHVWEKAAEKSCTLRTAAYIVACERILLARKDRG IYPG >gi|283548478|gb|GG730299.1| GENE 806 884134 - 884298 83 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085264|ref|ZP_06571001.1| ## NR: gi|291085264|ref|ZP_06571001.1| hypothetical protein CIT292_06810 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_06810 [Citrobacter youngae ATCC 29220] # 16 54 1 39 39 75 100.0 1e-12 MRWPARPTGLIGMDSMGFSWEVNNYALTVLLLRLFCGVGNLICMFSKKHNLSDL >gi|283548478|gb|GG730299.1| GENE 807 884375 - 885055 442 226 aa, chain - ## HITS:1 COG:ycgE KEGG:ns NR:ns ## COG: ycgE COG0789 # Protein_GI_number: 16129125 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 1 225 18 242 243 365 80.0 1e-101 MTLRAWQRRYGLLKPQRSEGGHRLFDEEDIQRIEEIKRWISNGTPVGKVKALLETSTRET GDDWNQLQEEMMSILRMANPPKLRAKMLSLGRAYPVDALIDRVYLPVRQRLILDHNTSRI MNSMLDGALIEYVAVLLSETRRKSGRDAILMAWDVEDRTRLWLEAWRLSQAGWHIAILAE PIETPRPELFPGQTLFVWTGTTPTRRQNELLQHWNEQGYKVIFHGT >gi|283548478|gb|GG730299.1| GENE 808 885330 - 886541 454 403 aa, chain - ## HITS:1 COG:ycgF_2 KEGG:ns NR:ns ## COG: ycgF_2 COG2200 # Protein_GI_number: 16129126 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 161 403 1 243 243 357 71.0 2e-98 MLTTIIYRSHLRDDAPLYAIEDMVMAANLKNRRSDVTGILLFNGRHFFQLLEGPEEQVKE IYRCICNDPRHHNIVELMCDYAPARRFGKVGMELFDLQKHERAEVLQAVLNQGTSKFQLT YDDRALQFFRTFVLATEKSTYFEIPPADFWDFITDNSCTTLDETELASNTDYTFAFQPII DPLSQRVIALEALIRGKDGKTPAAYFEKLNTEEIYTADLESKKTAFAMARALNLGEKMLS INLLPMTMVNRPDAVNFLIHEIAANGLVPEQIIVEFTESEVISRFDAFAQAVKSLKAAGI CVAVDHFGAGYAGLLLLSRFQPDRIKISRELIADVHKSGPRQAIIQAIIKCCTSLEIQLS AVGIEKPEEWMWLESAGIELFQGNLFAPACLNGTPSVAWPEKK >gi|283548478|gb|GG730299.1| GENE 809 886859 - 887095 272 78 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1449 NR:ns ## KEGG: ECUMN_1449 # Name: ycgZ # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 78 1 78 78 123 84.0 2e-27 MQQHTVRIDSANAISRYFAKAHLPTQQETLGEIVTEILKDGRNLSRKSLCAKLLNRLEKA SGEDEQKHYNALIGLLFE >gi|283548478|gb|GG730299.1| GENE 810 887210 - 887413 117 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832836|ref|ZP_06352577.1| ## NR: gi|283832836|ref|ZP_06352577.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 67 24 90 90 123 100.0 4e-27 MNTAISLPALIKQLRLMKASETDAGRRQLIDSIIHDFTDFNPARMNPKPERTVDESVFSG SKKPKLH >gi|283548478|gb|GG730299.1| GENE 811 887449 - 887715 247 88 aa, chain + ## HITS:1 COG:no KEGG:ECS88_1227 NR:ns ## KEGG: ECS88_1227 # Name: ymgB # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 88 1 88 88 110 72.0 1e-23 MLQDMNVHRAIADKALSSYFRNAGELLADESVVLGQAVTNVILAGDKVNNKNIILSLIAS LESTTDVVQADIIRKTLEIVLRYTADDV >gi|283548478|gb|GG730299.1| GENE 812 887611 - 887808 88 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLCIVLIQNKNYTNPQHVLWVLEIYENIIISSDIVSRIAQHYFQGLSNNIGLNNVCCRLQ GSNQA >gi|283548478|gb|GG730299.1| GENE 813 887845 - 888138 97 97 aa, chain + ## HITS:1 COG:no KEGG:ECS88_1228 NR:ns ## KEGG: ECS88_1228 # Name: ymgC # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 63 1 63 82 69 49.0 4e-11 MANSIPENYIFQCALYKDVERKVMLKLGYVSDDALVQALSTQLRNEKNAILTDLYMQIMS HLQPDIRSEPRQINCDFSEVINDEYSSGTRQKCGIVD >gi|283548478|gb|GG730299.1| GENE 814 888092 - 888640 364 182 aa, chain + ## HITS:1 COG:STM1265 KEGG:ns NR:ns ## COG: STM1265 COG2771 # Protein_GI_number: 16764616 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 10 179 12 179 197 71 28.0 1e-12 MNIVQEHAKNAELWIEDIFIRRGLENILADIAFENDNMRLVFFTINYFDAVKKQNYDLRT HRLVLLIDGHLYQYLNDISFYRLPVDSGVDSIKKFICEIISIDTAHDRPSELNIILSERD KFILTQLGEGRTISEISTLLNLHLKTIYLTRQNLIKKLGCSGLIDFQGILQTPVFRNWLK HA >gi|283548478|gb|GG730299.1| GENE 815 888716 - 888889 58 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085267|ref|ZP_06571004.1| ## NR: gi|291085267|ref|ZP_06571004.1| collagen alpha-1(XXIV) chain [Citrobacter youngae ATCC 29220] collagen alpha-1(XXIV) chain [Citrobacter youngae ATCC 29220] # 1 57 1 57 57 119 100.0 5e-26 MYDKVNDHFIENPWVVLLQNLLGVPATILSGSTGGEDECGKQQIPGLPERDAYSASF >gi|283548478|gb|GG730299.1| GENE 816 888906 - 890489 755 527 aa, chain + ## HITS:1 COG:no KEGG:KPK_1305 NR:ns ## KEGG: KPK_1305 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 8 524 5 548 555 175 26.0 5e-42 MQASVPLRLLEVNSSLIWHWPYLQSVIAVMIRDQFNGLVINQQNLFSLLVSPSKYCQHGR ENLLREHQEHLLYLQRLCRYCRTSGIRVWLQGEALPRDGKIQEKHPEYALIDNSNADEIF WKNFYQHHLYEALEKLPGIDGIIVNLPRHQPYKASWVSTLPYLYKTLRTLGKKMVLRDYM EDEAASWQLINALQVLPPDVRVSIKAVAHGYRPGFVNNPLLTQLNGRIKWIEFDMWGLEY GWTLLPCYLLEEIQGRLSWVESMAGEELEAITGRLNWEWISNSSLINSVNSVNLHGLAMF GREIFMTEKQAFHCWLTDMLEHKVGMAEVNLFHQLYICSYEWMRKTPYILGHVLHYYSQV PESYALAVKQLQLHVRKSDDYALSTLFPVNDPDAGREQFQQLVLEKERALFLAQDSRNRL YQIIHSVAMSEEKKELFKRVWERVPWYTEMFNRVARSVAMKMMIDNYGHQSGISLFALTK EINELRLLATRLSEWMDKEEQQQPHYLAMLFDPARLISLADSLADNE >gi|283548478|gb|GG730299.1| GENE 817 890491 - 892287 1189 598 aa, chain - ## HITS:1 COG:SSO3036 KEGG:ns NR:ns ## COG: SSO3036 COG3250 # Protein_GI_number: 15899743 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Sulfolobus solfataricus # 45 576 11 551 570 207 29.0 7e-53 MLEKSNLAENAVECLHNEQYDIPYNTQNFNHTNLLFTGGRDAESLSGDWRFTLDLHDTGL RQKWHLLEKRDPETRRDPYDYDPFAGESVAVPGCWQMMNEKWFYFEGSAWYTREIDYLEQ DADERIFLRIGAANYDCKVFLNHQFIGNHYGGSTPFCAELTSVIQPGNNVLMICVNNTRT TDRLPLRNNDWFNYGGIYREIALYRTPQSYIRDLFVYLVPDGKYNRFAVKITVEGEAKEV NFTLAELGIAVTLPVINGVAEAELSAQPQIWSPECPKLYRVTASLGRDCVSDRVGFRQIE VVGTDIRLNGQSLYLRGVNCHEDDLLSGKMTSEADIRRRFKDAKELNCNYLRLAHYPHHE MAARIADEVGLLLWEEIPNYWAIDFKNPATQRDAHNQLMELIYRDRNRASVIIWSVGNEN ADTDERLDFMIMLVDAARKADPSRLVSAACLVNHAKMKIEDRLAEHLDIIGLNEYYGWYE ENFDDLLVLGENSSPSKPVVITETGAEGVISDNAPTSGPFSENYMADVYRKQTEYLPKLN YVRGFTPWLLYDYRTERRQNPYQKGFNCKGLITADKITRKKAFYILRDFYLQLKNAGA >gi|283548478|gb|GG730299.1| GENE 818 892655 - 893965 1078 436 aa, chain + ## HITS:1 COG:CC1508 KEGG:ns NR:ns ## COG: CC1508 COG0477 # Protein_GI_number: 16125755 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 11 434 12 430 431 357 45.0 2e-98 MGQLHGGVSNEAVKAGSTTSRYRWTICALLFFSVTINNLDRSILGLLAPMLQKDIGWNEI EYGNIVTAFQAAYALGLFLCGRIVDVYGARLVLPVALAIWSIAAMAHGMVGTVIGFIYAR IFLGLGESANFPSAVKVTAEWFPKRERAFATGIFNAGSNVGNVFAPVIIPWIALQWGWRE AFIVTGAVGLIWIAFWLLLYGKPEKIKKVNEDELAWIHQDDDAETVAQTTQKISWLGLLK YKQTWAFAVCKFLTDPIFWFFLFWIPKWLHDARDIDMAHMAMPLVLINVLATLGGLAGGY LPAWMVNRGIAVNKARKFTLLLCAICVLPILLVSNVSNLWVAVTLIGLAVAAHQGWSVNL YTSVSDMFPKQAVGAVVGIGCLIGSLGSILFTQATGHILQATGSYWSIFLMGGFAYLLGF LIMHLLIPTMSVAKFK >gi|283548478|gb|GG730299.1| GENE 819 893989 - 895101 1076 370 aa, chain + ## HITS:1 COG:no KEGG:CJA_3415 NR:ns ## KEGG: CJA_3415 # Name: not_defined # Def: hypothetical protein # Organism: C.japonicus # Pathway: not_defined # 56 347 51 337 397 102 27.0 4e-20 MSLTDNLLQERILAAKDKSLLWLKSMQLQNATPGVLRVSERHQAEQWPQMLLPGTYDGTM ARALLGDEIPEKKELADWILRHQQEDGYFELPGLNWSETWKGPDADKTRQYMRFHATNYC MGALEVLDQLDRLELPFIKPYLNPQYFWAWLAQRDMRDPWLEGNNIVNVGSFLLLEKQRD PQGPAAQRLQDMIFWHNQQSEPFSGFWGPGQQYSQEALLFALCGATHNLHVFYALDEDIP YFNQSMSRCLEQPLAIRSSCIDVDIIDILAHGHARCPYRRDEIEHWLRRMLVALLDFQNA DGGFPDTLLGERGYDGWVKGYKEPQGYSNTFATWFRWIAIAMIAQVLWPHWQNWRFRKTI GIGYFKAPSL >gi|283548478|gb|GG730299.1| GENE 820 895250 - 896344 1464 364 aa, chain - ## HITS:1 COG:STM1784 KEGG:ns NR:ns ## COG: STM1784 COG0012 # Protein_GI_number: 16765125 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Salmonella typhimurium LT2 # 1 364 1 363 363 677 93.0 0 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP QRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFESDNIIHVNNKVD PADDIDVINTELALSDLDTCERAIHRVQKKAKGGDKDAKAELAALEKCLPQLENAGMLRA LKNLTDEDKAAIKYLSFLTLKPTMYIANVNEDGFENNPYLDKVREIAAAEGSVVVAVCAA VEADIAELDDADREEFMAELGLEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTIPVGA TAPQAAGKIHTDFEKGFIRAQTIAFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNF LFNV >gi|283548478|gb|GG730299.1| GENE 821 896460 - 897044 557 194 aa, chain - ## HITS:1 COG:STM1783 KEGG:ns NR:ns ## COG: STM1783 COG0193 # Protein_GI_number: 16765124 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Salmonella typhimurium LT2 # 1 194 9 202 202 356 95.0 1e-98 MTIKLIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLRDEPKFFGYTSRVTLEGEDVR LLVPTTFMNLSGKAVGAMASFYRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI ISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEILFKDG LTKATSRLHTFKAQ >gi|283548478|gb|GG730299.1| GENE 822 897320 - 897601 185 93 aa, chain + ## HITS:1 COG:no KEGG:CKO_01260 NR:ns ## KEGG: CKO_01260 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 93 1 92 92 138 90.0 8e-32 MKRKNASLLGNVLMALGLVVMVGGVGYSILNQLPQFNLPQFFAHGAVLSIFVGGVLWLAG ARVGGHEQISDRYWWVRHYDKRCRRGDTNHRHN >gi|283548478|gb|GG730299.1| GENE 823 897724 - 899085 910 453 aa, chain - ## HITS:1 COG:YPO3719 KEGG:ns NR:ns ## COG: YPO3719 COG0527 # Protein_GI_number: 16123857 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Yersinia pestis # 8 453 16 461 461 522 62.0 1e-148 MTRIYPPSVVAKFGGTSVADFDAMNRSASIVLADQDVRLVVLSASAGVTNLLVELSEGLE THQQLDKLETLRAIQYNIISRLKQPSVISTEIDNLLNNIRNLAQTATLSPSDALSDELVS HGELMSSLLFTEVLRERHAEAGWFDARSVMRTNSSYGCAEPDLSTLHQLVETHLRPRLDQ AIMVTQGFIGRDAGGHTTTLGRGGSDYTATLLGEALHAARVDIWTDVAGIYTTDPRIAPR AKRIDHISFSEASDMAAHGAKVLHPATLIPAMRKSIPVFVGSSKDTAAGGTLVHNTTDNP PRYRALAVRRKQTLLRLHSLEAQPSCAFLAQAFAILSRHAVAVDLVTTSENCIALALDAT HATSGEDHILTTALFTALASHCRVEVETGLALVTLVGNQLTQAAGVCKDVFTWLEEHTVR MICHGASNDNLCILLPAEDADSAIRTLHNRLFE >gi|283548478|gb|GG730299.1| GENE 824 899705 - 901087 1480 460 aa, chain + ## HITS:1 COG:HI0949 KEGG:ns NR:ns ## COG: HI0949 COG0160 # Protein_GI_number: 16272887 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Haemophilus influenzae # 18 455 13 448 454 598 65.0 1e-171 MTDKVRIDTLSANSLPQSNDTFLARQAEFESNVRSYPRKLPLAIAKAQGVWITDVENNQY LDCLAGAGTLALGHNHPEVLQSIQSVITSGLPLHTLDLTTPLKDEFSSYLLSLLPGQGKE YCLQFTGPSGADAVEAALKLAKKVTGRSSIISFSGGYHGMTHGALSVTGNLSPKEAVSNM MAEVQFMPYPHQYRCPLGIGGEAGVKALTYYFENLINDVESGVRKPAAVILEAVQGEGGV NPAPVEWLQRIRKVTQEHGILLIIDEVQAGFARTGKLFAFEHAGIEPDIIVMSKAVGGGL PLAVLGIKKQFDAWAPGHHTGTFRGNQLAMATGLTTLKILKDDKIADKVAAQGEWLKGKL AELQKRYPVIGQVRGLGLMIGLEIVKPNEAQDHMGCYPADGELSALLQKKCFENGLILER GGRNGCVLRLLPSLLITNAELEIFLDKFENALLGAGMKPV >gi|283548478|gb|GG730299.1| GENE 825 901103 - 902566 1929 487 aa, chain + ## HITS:1 COG:HI0946.1 KEGG:ns NR:ns ## COG: HI0946.1 COG0076 # Protein_GI_number: 16272884 # Func_class: E Amino acid transport and metabolism # Function: Glutamate decarboxylase and related PLP-dependent proteins # Organism: Haemophilus influenzae # 13 484 17 497 511 523 55.0 1e-148 MSDVNPILSGSAQSIAAYQDAIEQSTQAVVEWLKQPEMYQGKTVEQLRERINLNFTSQGL GNQAAIERAVDYFLKDSLLVHHAQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQSPSA TIIEIKLIEWLREQVGYAAGDAGVFTSGGTQSNLMGLMLARDAFFARQGHSIQQNGLTGD LSKIKVFCSESAHFSVQKNMALMGLGYRSVTQVKTDAFSRMDLADLKDKLAQAQANGEQV MAIVATAGTTDAGAIDPLADIAALAAEHQIWMHVDAAWGGALLLSEKYRHFLNGLELADS VTLDFHKQFFQTISCGAFLLKDARHYELMRYQAAYLNSDFDEEHGVPNLVSKSLQTTRRF DALKLWMGLEALGKKQYAEIIDNGVTLARDVADFVKTQPHLELVMEPQLASVLFRFRPAS DDMAFVALLNQHIGDVLLASGSANVGVTEADGVTCLKLTLLNPTVCLEDVKVLLASVKAT AEQLLKA >gi|283548478|gb|GG730299.1| GENE 826 902647 - 904302 1847 551 aa, chain - ## HITS:1 COG:STM1781 KEGG:ns NR:ns ## COG: STM1781 COG0659 # Protein_GI_number: 16765122 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Salmonella typhimurium LT2 # 1 551 2 552 553 904 94.0 0 MPFRALIDACWKEKYTASRFTRDLIAGITVGIIAIPLAMALAIGSGVAPQYGLYTSAVAG IVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLMSGIFLILFGLARFGRLIE YIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPTINFGDAAIG IVTLGILIFWPHLGIRLPGHLPALLAGCAVMGIVNLAGGHVATIGSQFHYVLADGSQGNG IPQLLPQLVLPWNMPESNFTLSWGSLQALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHK ANSELIGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHAILVILALLVLAP LLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLMCMSLTVLFDMVIAISV GIVLASLLFMRRIARMTRLAPVNVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRIAGKRI VVLKWDAVPVLDAGGLDAFQRFVKKLPEGCELRVSNLEFQPLRTMARAGIQPIPGRLTFF PNKDAALADIL >gi|283548478|gb|GG730299.1| GENE 827 904454 - 905401 957 315 aa, chain - ## HITS:1 COG:STM1780 KEGG:ns NR:ns ## COG: STM1780 COG0462 # Protein_GI_number: 16765121 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Salmonella typhimurium LT2 # 1 315 1 315 315 593 100.0 1e-169 MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTC APTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSV GVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAI AKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERG AKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIPLTDEIKALPNVRTLTLSGMLAEAI RRISNEESISAMFEH >gi|283548478|gb|GG730299.1| GENE 828 905667 - 906515 623 282 aa, chain - ## HITS:1 COG:STM1779 KEGG:ns NR:ns ## COG: STM1779 COG1947 # Protein_GI_number: 16765120 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Salmonella typhimurium LT2 # 1 282 2 283 283 507 90.0 1e-144 MTHWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDEIDITLRNGGEIHLLTPVKGVA HEDNLIVRAARLLMKTAADSDRLPAGSGADISIEKRLPMGGGLGGGSSNAATVLVALNHL WQCGLSVDELAAIGLTLGADVPVFVRGHAAFAEGVGEILTPVEPEEKWYLVAHPGVSIPT PVIFNDPDLPRNTPKRSIKTLLKCEFGNDCEVIARKRFREVDAALSWLLEYAPSRLTGTG ACVFAEFDTESRARQVLEQAPEWLKGFVAKGVNLSPLHRALL >gi|283548478|gb|GG730299.1| GENE 829 906515 - 907204 751 229 aa, chain - ## HITS:1 COG:STM1778 KEGG:ns NR:ns ## COG: STM1778 COG3017 # Protein_GI_number: 16765119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein involved in outer membrane biogenesis # Organism: Salmonella typhimurium LT2 # 23 229 1 207 207 389 93.0 1e-108 MSDGGASIESYNCNVSQGFVIIMTLPDFRLIRLLPLAALVLSACTLNAPKGPGKSPDSPQ WRQHQQEVRALNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNA QPGNVELVDNKGKHYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLS EVNYSKDGKNWKVVYSAYDSKTQPAMPANMELSDGSQRIKLKMDNWIVK >gi|283548478|gb|GG730299.1| GENE 830 907350 - 908606 1348 418 aa, chain + ## HITS:1 COG:STM1777 KEGG:ns NR:ns ## COG: STM1777 COG0373 # Protein_GI_number: 16765118 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Salmonella typhimurium LT2 # 1 418 1 418 418 718 96.0 0 MTLLALGINHKTAPVSLRERVTFSPDTLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVE EQDNLQEALISWLCEYHNLNEDDLRNSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQ VKKAFADSQKGHLNATALERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESL STVTVLLVGAGETIELVARHLREHKVKKMIIANRTRERAQVLADEVGAEVISLSDIDARL QDADIIISSTASPLPIIGKGMVERALKNRRNQPMLLVDIAVPRDVEPEVGKLSNAYLYSV DDLQSIISHNLAQRKAAAVEAETIVAQETSEFMAWLRAQGASETIRDYRSQSEQIRDELT AKALAALQQGGDAQAIMQDLAWKLTNRLIHAPTKSLQQAARDGDSERLNILRDSLGLE >gi|283548478|gb|GG730299.1| GENE 831 908648 - 909730 1248 360 aa, chain + ## HITS:1 COG:ECs1716 KEGG:ns NR:ns ## COG: ECs1716 COG0216 # Protein_GI_number: 15830970 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Escherichia coli O157:H7 # 1 360 1 360 360 610 95.0 1e-174 MKPSIVAKLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSRCFTDWQQVQE DIETAQMMLDDPEMREMAQDELREAKEKCEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG GDEAALFAGDLFRMYSRYAESRRWRVEIMSASEGEHGGFKEVIAKISGEGVYGRLKFESG GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTT DSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVARRQQAEASERRNLLGS GDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEYQADQLAALSEQD >gi|283548478|gb|GG730299.1| GENE 832 909730 - 910563 257 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227996692|ref|ZP_04043706.1| (LSU ribosomal protein L3P)-glutamine N5-methyltransferase [Kangiella koreensis DSM 16069] # 46 259 69 283 304 103 31 4e-20 MDYQHWLREAISQLQASESPRRDAEILLEFVTGKGRTFILAFGETVLTEAQREQLATLVA RRQRGEPVAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPASACRILDLGTGT GAIALALASERPDCAVTAVDRMPDAVALAMRNTRHLAIDNVQVLQSDWFSALSGQQFDMI VSNPPYIDEQDPHLAQGDVRFEPLSALVAGENGLADIVHIIDSSRSVLTPGGYLLLEHGW QQGAAVREAFIRAGYLAVETCRDYGGNERITLGRLPS >gi|283548478|gb|GG730299.1| GENE 833 910560 - 910952 347 130 aa, chain + ## HITS:1 COG:ychQ KEGG:ns NR:ns ## COG: ychQ COG3094 # Protein_GI_number: 16129176 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 130 1 130 130 172 81.0 1e-43 MSTFSVLLNVHLISIALSVGLLTLRFWWRYTDAGLARARWTRIVPPVVDTVLLLSGVALM VKTHILPFTEQGTWLTEKLFGVIIYIVLGFIALDYRRARSQQARLVAFPLALVVLYIIIK LATTKIPLLG >gi|283548478|gb|GG730299.1| GENE 834 910956 - 911765 973 269 aa, chain + ## HITS:1 COG:STM1773 KEGG:ns NR:ns ## COG: STM1773 COG2912 # Protein_GI_number: 16765114 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 488 95.0 1e-138 MRSLADFEFNKAPLCDGMILASESIRLDFPTQTVYDELERLVSLAQEEISQLLSQDEQLE KLLALFYGEWGFTDTHGVYRLSDALWLDQVLKNRQGSAVSLGAILLWIANRLDLPLVPVI FPTQLILRIESLDGEMWLINPFNGETLNEHTLEVWLKGNISPVAELFNEDLDEADNAEVI RKLLDTLKSSLMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLECEHVALTDLSY FVEQCPEDPISEMIRAQINTISHKQIVLH >gi|283548478|gb|GG730299.1| GENE 835 911801 - 912655 1043 284 aa, chain + ## HITS:1 COG:STM1772 KEGG:ns NR:ns ## COG: STM1772 COG2877 # Protein_GI_number: 16765113 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Salmonella typhimurium LT2 # 1 284 1 284 284 561 98.0 1e-160 MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK ANRSSIHSYRGPGLEEGMKIFQELKQTFGVKVITDVHEASQAQPVADVVDVIQLPAFLAR QTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFHEGGNDKVILCDRGANFGYDNLVVD MLGFSVMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRGQVTELARAGMAVGLAGLFIEA HPDPAHAKCDGPSALPLAKLEQFLTQIKAIDDLVKSFDELDTEN >gi|283548478|gb|GG730299.1| GENE 836 912702 - 913415 254 237 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 234 4 239 242 102 33 8e-20 MSPFNGKSVLVLGGSRGIGAAIVRRFAADGASVTFTYSGSADAAKALADETGSHTAQTDS ANRDAVIDRVRQSGPLDVLVVNAGIVLFGDALEQDPDDVERLFRINIHAPWYAAVEAARQ MPDGGRIIIIGSVNGDRMPIAGMASYALSKSALQGLARGLARDFGSRGITVNVVQPGPID TDANPAEGPLKELMHSFMALKRHGRPEEVAGMVAWLAGPEAGFVTGAMHTIDGAFGA >gi|283548478|gb|GG730299.1| GENE 837 913455 - 914078 295 207 aa, chain + ## HITS:1 COG:STM1674 KEGG:ns NR:ns ## COG: STM1674 COG1309 # Protein_GI_number: 16765017 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 14 198 2 186 196 218 61.0 5e-57 MSAWFSVNGFVMSTTKYSRAPGRPRNFDPELAVAKVQPLFHAHGYDAVSVADVTQALNIK PPSFYAAFGNKIGLYERVLGRYVQTDAIPFDDILRSDRPVAESLAALLEEAARRYAADPQ APGCLVLEGTHSNDPQARQVARAFYSVAELKIHDFIAQRHPDVADSLTDYVSTTMLGLSG KARCGHTLERLLSSAQIASQAVLHQLS >gi|283548478|gb|GG730299.1| GENE 838 914107 - 915798 1053 563 aa, chain + ## HITS:1 COG:STM1472 KEGG:ns NR:ns ## COG: STM1472 COG1574 # Protein_GI_number: 16764818 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Salmonella typhimurium LT2 # 39 560 34 559 568 602 56.0 1e-172 MMGKMGRCFNTPPPAIRNATLAAILIGVSFLAHSQDKADVILYNGKLITMDEQQPNAQAL AVKGRHIIAVGNNETVKKWSGPNTREINLTGQTVIPGLIDAHLHGIRGGRTFLFETYWFD TKNLPDALNKLSQSAAQKTPAQWVAVAGSWIPEQFAEKRDPTVQELNQAVPHHPAYIQSL YDYALLNQKAIETLKLNNSQPDVPAGIVIERDDKGLATGKLRGTIGSFNQLFAQISQTGD VEKNLNAFVRYLNKRGVVGFIDPSAGHEQAYRDFFKLQQQQPLRIRVGYRLSAPPGNETE WFKQRLAFRPAMHDDGRIAFLGFGESLVMAMNDGVRMSSGFESSAESQQEQLKVLQLAAK EGVAVEIHAYTDDSADAILDVISEVAKSHDIAPLRWSIAHLNTGTPETIARMKKLGLAYS VQMGPYFESPAIERANGKTVAALSSPIQPALEQGVIVAGGTDATRIGVAGVWHAIEYHVT GKALDGSVRHDTRQLSREDALKMYTRNAAWLAFAEQQRGSLQAGKLADFAVLNQDIMAIP ADKLHQTESLLTFVDGQQVYPES >gi|283548478|gb|GG730299.1| GENE 839 915854 - 916954 1070 366 aa, chain - ## HITS:1 COG:STM1771 KEGG:ns NR:ns ## COG: STM1771 COG0387 # Protein_GI_number: 16765112 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/H+ antiporter # Organism: Salmonella typhimurium LT2 # 1 366 1 366 366 581 93.0 1e-166 MTQIHEAVKTRHKETSLVFPILALVVLFLWGSSQSLPVVIGINALALVGILSSAFSVVRH ADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTLMRDTLYSIIMIVTGGLVG FSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMALPGANFTTAQALLVALISAA MYGVFLLIQTKTHQSLFIYEHEDEGDDDDPHHGKPSAHSNMWHAAWLIIHLIAVIAVTKM NASPLETLLTELNAPVAFTGFLVALLILSPEGLGALKAVLNNQVQRAMNLFFGSVLATIS LTVPVVTLIAWATGNDLVFALGAPEMIVMVSSLVLCHISFSTGRTNVLNGAAHLALFIAY LMTIFA >gi|283548478|gb|GG730299.1| GENE 840 917229 - 917459 325 76 aa, chain + ## HITS:1 COG:STM1770 KEGG:ns NR:ns ## COG: STM1770 COG4572 # Protein_GI_number: 16765111 # Func_class: R General function prediction only # Function: Putative cation transport regulator # Organism: Salmonella typhimurium LT2 # 1 75 1 75 76 96 90.0 1e-20 MPYKSKSDLPESVQHVLPAHAQDIYKEAFNSAWEQYKDKSDRRDDASREETAHKVAWAAV KNDYQKGEDDKWHKKT >gi|283548478|gb|GG730299.1| GENE 841 917656 - 918351 547 231 aa, chain + ## HITS:1 COG:chaC KEGG:ns NR:ns ## COG: chaC COG3703 # Protein_GI_number: 16129181 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in cation transport # Organism: Escherichia coli K12 # 1 231 8 238 238 429 88.0 1e-120 MLTRDFLLNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDDGPVWIFGYGSLMWNPV LEFEESCTGTLVGWHRAFCLRLTAGRGTACQPGRMLALKEGGRTTGVAYRLSDASLEQEL SLLWKREMITGCYLPTWCQLALDDGRTVNALVFIMDPRHPLFESDTRAQVIAPLIAAASG PLGTNAQYLFSLEQELVKLGMQDDCLNDLVITVKRLLGENLPEGVIRPGFA >gi|283548478|gb|GG730299.1| GENE 842 918404 - 918649 177 81 aa, chain - ## HITS:1 COG:no KEGG:CKO_01286 NR:ns ## KEGG: CKO_01286 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 81 1 81 81 147 92.0 2e-34 MALVKASLKLFGGDTVVVRCSGRCHIHLMSEKNHVKDTQSDILSVQDRDNAWLTVPYTGV WNVLIDSHSQSLEHSISFIAA >gi|283548478|gb|GG730299.1| GENE 843 918912 - 919265 371 117 aa, chain - ## HITS:1 COG:STM1769 KEGG:ns NR:ns ## COG: STM1769 COG1553 # Protein_GI_number: 16765110 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Salmonella typhimurium LT2 # 1 117 1 117 117 208 91.0 2e-54 MQKIVIVANGAAYGSESLFNSLRLAIALREQDADLDLRLFLMSDAVTAGLRGQKPAEGYN IQQMLEILTAQNVPVKLCKTCTDGRGITPLPLIDGVAVGTLPELAQWTLDADKVLTF >gi|283548478|gb|GG730299.1| GENE 844 919474 - 920859 1191 461 aa, chain + ## HITS:1 COG:no KEGG:CKO_01295 NR:ns ## KEGG: CKO_01295 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 17 460 3 446 454 755 84.0 0 MSRIIYFPLAVFALLPLAGGIASAQSSFVHQAENPFDNNSDGLPDLGMAPESRAGEKHFA EMVKAFGEASMTDNGLDTGEQAKQFAFGQVRDTVSEQVNQRLESWLSPWGNASVGLQVDN EGSFTGSRGSWFIPWQDNQRYLTWSQLGLTQQNEGLVSNAGIGQRWVRDGWLLGYNTFYD NLLDENLPRGGLGAEAWGEYLRLSANYYQPFSSWQERSATQEQRMARGYDLTAQMRMPFY QHLNTSVSVEQYFGDRVDLFHSGTGYHNPVAVNLGLTYTPVPLVTVTAQHKQGENGISQN NLGLTLNYRFGVPLKKQLMVSEVANSRSLRGSRYDDPQRNSLPTLEYRQRKTLSVFLATP PWDLKPGETVALKVQVRSLHGIRHLAWQGDTQALSLTAGSSTRSAQGWTIIMPKWDSREG ATNRWRLSVVVEDELGQRVSSNEITLSLTEPFITVSENDPH >gi|283548478|gb|GG730299.1| GENE 845 920888 - 921538 864 216 aa, chain - ## HITS:1 COG:ECs1726 KEGG:ns NR:ns ## COG: ECs1726 COG2197 # Protein_GI_number: 15830980 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 216 1 216 216 336 97.0 3e-92 MSNLEPATILLIDDHPMLRTGVKQLVSMAPDITVVGEASNGEQGIELAESLDPDLILLDL NMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKAL QQAAAGEMVLSEALTPVLAASLRANRATSDRDVTQLTPRERDILKLIAQGLPNKMIARRL DITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF >gi|283548478|gb|GG730299.1| GENE 846 921531 - 923327 1635 598 aa, chain - ## HITS:1 COG:STM1766 KEGG:ns NR:ns ## COG: STM1766 COG3850 # Protein_GI_number: 16765107 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrate/nitrite-specific # Organism: Salmonella typhimurium LT2 # 1 598 1 598 598 1066 91.0 0 MFKRCLSPLTLVNQVALIVLLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRL LAAVPLDANDQTLLDEMEKTAFSPELTRAAQRDGQQAQLKALQDYWHTELAPGLAHAQTP DAVAQDVTRFVVGLDKLVTAFDHTTELRIERVVLLHRLMAVFMALLLVFTIIWLRVRLLA PWKQLLAMARAVSQRDFTQRAHISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAG LEHKNQILSFLWQANRRLHSQVPLCERLSPVLNGLQNLTLLHDIELRVYDLEDEDNHQEF TCQSTASCDEKGCHLCPRGTLPAIDGGITLKWRLADAHTQYGILLATLPHGRHLSHDQQQ LVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQG DVLPENSRELLGQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCQEYSARFGFTV KLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSHADEVVVTVAQNGKQIKLTVQDNGCG VPENAERSNHYGMIIMRDRAQSLRGDCRVRRRETGGTEVTVTFIPETNFTEVQGDTHE >gi|283548478|gb|GG730299.1| GENE 847 923667 - 925058 1476 463 aa, chain + ## HITS:1 COG:STM1765 KEGG:ns NR:ns ## COG: STM1765 COG2223 # Protein_GI_number: 16765106 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Salmonella typhimurium LT2 # 1 462 1 462 465 764 94.0 0 MSHSSAPERASGAVITEWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAV NLPKVGFNFTTEQLFMLTALPSVSGALLRVPYSFMIPLFGGRRWTAFSTGILIVPCVWLG FAVQDTTTPFSTFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSV MQLVAPLVVSLSIFAAFGSQGVEQPDGTQLYLANAAWIWVPFLAVLTLAAWFGMNELATS KASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPEVQILHYAFFGPLI GALARSAGGAISDRLGGTRVTLVNFVLMAVFSALLFLTLPSNGVGGSFIAFFAVFLALFL TAGLGSGSTFQMISVIFRKLTMDRVKAEGGSEEKAMREAATDTAAALGFISAIGAIGGFF IPKAFGTSLALTGSPVDAMKVFLIFYVACVAITWAVYGRHSKK >gi|283548478|gb|GG730299.1| GENE 848 925574 - 929317 4422 1247 aa, chain + ## HITS:1 COG:ECs1729 KEGG:ns NR:ns ## COG: ECs1729 COG5013 # Protein_GI_number: 15830983 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Escherichia coli O157:H7 # 1 1247 1 1247 1247 2516 95.0 0 MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKVVRSTHGVNCTGSCSW KIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMK MWREAKKLHSDPVDAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKT YGPDRVAGFSPIPAMSMVSYASGARYMSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPE SADWYNSSYILAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQ GTDAAMAMAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAAD LVDSLGQENNPEWKTVAINNNGEMVAPNGSIGFRWGEKGKWNLEQRDGTSGDETELQLSL LGSQDDIAEVGFPYFGGEGTEHFNKVELENVLLHKLPVKRLLLADGSTALVTTVYDLTMA NYGLERGLNDENCATSYDDVKAYTPAWAEKITGVSRAQIVRIAREFADNADKTHGRSMII VGAGLNHWYHLDMNYRGLINMLVFCGCIGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQ RPPRHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAP QLGTNPLRIADEAKKAGMTPVDYTVKALKEGSLRFAAEQPENGKNHPRNLFIWRSNLLGS SGKGHEYMLKYLLGTEHGIQGKDLGQQSGVKPEEVEWQDNGLDGKLDLVVTLDFRLSSTC LYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKAIAKKFSEVCVG HLGKETDVVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGVTAPHIMTVERDYPATYERF TSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPWLNTAIDAAEMILTLA PETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEH VSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKTVIGEKSN GNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEVDAKDLGIEDNDWIEVFN SNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIG GYAQLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK >gi|283548478|gb|GG730299.1| GENE 849 929314 - 930852 1900 512 aa, chain + ## HITS:1 COG:STM1763 KEGG:ns NR:ns ## COG: STM1763 COG1140 # Protein_GI_number: 16765104 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Salmonella typhimurium LT2 # 1 511 1 510 511 1075 98.0 0 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQE KWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGMDDYYEPFDFDYQNLHTAPEGSKA QPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYL PRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGK SEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTEHEKDLYQRQLDVF LDPNDPAVIEQALKDGIPLSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLS PIQSAADAGTLGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAET VDGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTF GDGCHGSDTKFNLFNSRRIDAVDVTSKTEPHQ >gi|283548478|gb|GG730299.1| GENE 850 930849 - 931559 967 236 aa, chain + ## HITS:1 COG:STM1762 KEGG:ns NR:ns ## COG: STM1762 COG2180 # Protein_GI_number: 16765103 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Salmonella typhimurium LT2 # 1 236 1 236 236 410 97.0 1e-115 MIELVIVSRLLEYPDAALWQHQQELFDALALSENLDKEDAQTLGVFLRDLTAQDMLDAQA SYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEY LAQLPKSEALGGLQDIAPILALLSARLQQRASRYAVLFDLLLKLANTVIDSDKVAEKIAD EARDDTPQALDAVWEEEQVKFFADRGCGESEISAHQRRFAGAVAPQYLNITTGGQH >gi|283548478|gb|GG730299.1| GENE 851 931559 - 932236 937 225 aa, chain + ## HITS:1 COG:ECs1732 KEGG:ns NR:ns ## COG: ECs1732 COG2181 # Protein_GI_number: 15830986 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Escherichia coli O157:H7 # 1 225 1 225 225 403 92.0 1e-112 MHFLNTFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGIL GIFAGHFLGMLTPHWMYEAWLPIAVKQKMAMFAGGASGVMCLVGGVLLLKRRLCSPRVRA TTTGADILVLSILVIQCALGLLTIPFSAQHMDGSEMMKLVNWAQTVVTFHGGASEYLDGV AFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQIVRARH >gi|283548478|gb|GG730299.1| GENE 852 933123 - 933269 81 48 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1528 NR:ns ## KEGG: ECUMN_1528 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 48 101 149 149 82 89.0 4e-15 MVVGEGFEPSKSMTADLQSTPFGRSGTPPRGNAIYWPASGGSGAHHIK >gi|283548478|gb|GG730299.1| GENE 853 933365 - 934207 807 280 aa, chain - ## HITS:1 COG:ECs1734 KEGG:ns NR:ns ## COG: ECs1734 COG0788 # Protein_GI_number: 15830988 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate hydrolase # Organism: Escherichia coli O157:H7 # 1 280 1 280 280 546 96.0 1e-155 MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFND VTLLADLDSALPDGSIRELTPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGN HETLRPLVERFDIPFELVSHEGLTRDEHDQKMADAIDAHQPDYVVLAKYMRVLTPTFVSR FPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHT YTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL >gi|283548478|gb|GG730299.1| GENE 854 934263 - 934718 202 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90021194|ref|YP_527021.1| ribosomal protein L20 [Saccharophagus degradans 2-40] # 4 127 3 131 134 82 36 8e-14 MSQLCPCGSAVEYSLCCYRYVSGAQVAPTPSHLMRSRYCAFVMKDADYLIRTWHPDCHAA AFRDDIIAGFAHAEWLGLTVFEQQTVDSENIGYVSFVARFSEQGKTGAIIERSRFLKENG QWYYIDGTRPQIGRNDTCPCGSGKKFKKCCG >gi|283548478|gb|GG730299.1| GENE 855 934830 - 935741 595 303 aa, chain + ## HITS:1 COG:ECs1736 KEGG:ns NR:ns ## COG: ECs1736 COG1752 # Protein_GI_number: 15830990 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Escherichia coli O157:H7 # 1 303 14 314 314 537 86.0 1e-152 MRKIKIGLALGSGAARGWSHIGVIKALKHMGIDVDIVAGCSIGSLVGAAYACNKLPALEQ WVCSFSYWDVLRLMDLSWRRGGLLRGERVFNQYRNVMPVESIEQCTRRFATVATNLSTGR ELWFTEGDLHLAVRASCSIPGLMSPVAHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDL QHDAHLMQQDLLSFNVSSDAEPGDGADELSWHGRLKERLSNITARRAVTAPTAMEIMTTS IQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASAAIAAGQLAVEKKMDELLPLVK TNV >gi|283548478|gb|GG730299.1| GENE 856 935831 - 936844 572 337 aa, chain + ## HITS:1 COG:STM1753_1 KEGG:ns NR:ns ## COG: STM1753_1 COG0784 # Protein_GI_number: 16765097 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Salmonella typhimurium LT2 # 1 134 1 134 134 249 91.0 8e-66 MTQPLVGKQILIVEDEPVFRSLMDSWFSSLGAITAVAGDGLEALDLLGHFTPDLMICDLA MPRMNGLKLVEYLRNRGDQTPILVISATENMSDIAKALRLGVDDVLLKPVKDLNRLRETV FACLYPNMFNSRVEEEERLFRDWDAMVGDPAAAAKLLQELQPPVSQVIAKCRINYRQLVA ADQPGLVLDIAPLSDHDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLTQQNQRLPE LGALLKQVNHLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNATLNTGSHQVQISNGVP LGTLGNTYLNQLSQRCESWQCQIWGAGGRLRLMLSAE >gi|283548478|gb|GG730299.1| GENE 857 937049 - 937957 919 302 aa, chain + ## HITS:1 COG:ECs1738 KEGG:ns NR:ns ## COG: ECs1738 COG1210 # Protein_GI_number: 15830992 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Escherichia coli O157:H7 # 1 302 1 302 302 570 96.0 1e-162 MAAINSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLV THSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVL CAHPVVGDEPVAVILPDVILDEYESDLSRENLAEMIHRFDETGSSQIMVEPVEDVTAYGV VDCKGVELSPGESVPMVGVVEKPKANVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQ LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGAEFKAWLEEEMGI KK >gi|283548478|gb|GG730299.1| GENE 858 938095 - 938508 483 137 aa, chain - ## HITS:1 COG:ECs1739 KEGG:ns NR:ns ## COG: ECs1739 COG2916 # Protein_GI_number: 15830993 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Escherichia coli O157:H7 # 1 136 1 136 137 188 96.0 3e-48 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVSERREEESAAAAEVEERTRKLQQ YREMLIADGIDPNELLNSMAAVKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIK KAMEEQGKQLDDFLIKD >gi|283548478|gb|GG730299.1| GENE 859 939144 - 939761 275 205 aa, chain + ## HITS:1 COG:STM1750 KEGG:ns NR:ns ## COG: STM1750 COG1435 # Protein_GI_number: 16765094 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Salmonella typhimurium LT2 # 1 204 1 204 205 374 92.0 1e-104 MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRAVVYTAEIDDRFGTGKVSSRIGLSSPAK LFNQNSSLFEEIRAENAQQRIHCVLVDESQFLTRQQVYELSEVVDRLDIPVLCYGLRTDF RGELFGGSEYLLAWSDKLVELKTICFCGRKASMVLRLDQSGRPFNEGEQVVIGGNERYVS VCRKHYKQAQSEGSLTAIQERHSHD >gi|283548478|gb|GG730299.1| GENE 860 939999 - 942677 2823 892 aa, chain - ## HITS:1 COG:STM1749_2 KEGG:ns NR:ns ## COG: STM1749_2 COG1454 # Protein_GI_number: 16765093 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Salmonella typhimurium LT2 # 448 879 1 432 445 845 96.0 0 MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMG IVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTA IFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNA LMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTF DNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQGKELKAVQDVILKNGALNAAIVGQP AYKIAELAGFSVPETTKILIGEVKVVDESEPFAHEKLSPTLAMYRAKDFEDAVDKAEKLV AMGGIGHTSCLYTDQDNQPERVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLG CGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHK RALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTVVRKGAELANSFKPDVI IALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSG TGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALE AYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLG VCHSMAHKLGSQFHIPHGLANALLISNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIAD HLGLSAPGDRTAAKIQKLLGWLEEIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQ CTGANPRYPLISELKQILLDTYYGREYSEGQTTAKTEAVAAPKAEKKAKKSA >gi|283548478|gb|GG730299.1| GENE 861 943165 - 943812 441 215 aa, chain + ## HITS:1 COG:STM1748 KEGG:ns NR:ns ## COG: STM1748 COG2095 # Protein_GI_number: 16765092 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Salmonella typhimurium LT2 # 1 214 1 214 215 357 95.0 7e-99 MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWT SLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGV VPLALPLMAGPGAISSTIVWGTRYHSAINLFGFFVAIALFALCCWGLFRMAPWLVRLLGQ TGINVITRIMGLLLMALGIEFIVTGIKSIFPGLLA >gi|283548478|gb|GG730299.1| GENE 862 944202 - 944600 60 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLVIVFVLPHYYGWFFNQTGNPVRIPVRHRRFSAVRWFIVLLLAITDFIYSGDSYDRLAS IIYVSPLPETRCYPVERNQLKIILINVKSSAKYLAGKYQMRFFTANTFYKFVNQFSFIRN KSHWQRLSNENS >gi|283548478|gb|GG730299.1| GENE 863 944590 - 946221 1829 543 aa, chain + ## HITS:1 COG:STM1746 KEGG:ns NR:ns ## COG: STM1746 COG4166 # Protein_GI_number: 16765090 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 543 40 582 582 978 91.0 0 MTNITKKSLLAAGILTALIAGNAATAAVVPAGVQLAEKQTLVRNNGSEVQSLDPHKIEGV PESNINRDLFEGLLISDVDGKPSPGVAEKWENKDFKVWTFHLRKDAKWSDGTPVTAQDFV YSWQRLANPNTASPYASYLQYGHIVNIDDIIAGKKPVTDLGVKAIDDHTFEVTLSEPVPY FYKLLVHSSVSPVPKAAVEKYGDKWTQPANIVTNGAYKLKDWVVNERIVLERNTNYWDNA KTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVHVDPYLCTYY YEINNQKAPFNDVRVRTALKLAMDRDIIVNKVKNQGDLPAYSFTPPYTDGAKLVEPEWFK WSQEKRNEEAKKLLAEAGYTAEKPLTFDLLYNTSDLHKKLAIAAASIWKKNLGANVKLEN QEWKTFLDTRHQGNYDVSRAGWCADYNEPTSFLNMVLSDSSNNTVHYKSPAFDKLIADTL KVTDEAQRSELYSKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYSGKDPMDNIHVKDLYI IKH >gi|283548478|gb|GG730299.1| GENE 864 946454 - 947374 938 306 aa, chain + ## HITS:1 COG:STM1745 KEGG:ns NR:ns ## COG: STM1745 COG0601 # Protein_GI_number: 16765089 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 306 1 306 306 538 96.0 1e-153 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIS TQYFSYLKQLAHGDFGPSFKYKDYTVNDLVASSFPVSAKLGAAAFILAVLVGVSAGVIAA LKQNTRWDYTVMGVAMTGVVIPSFVVAPLLVMIFAITLKWLPGGGWNGGALKFMILPMVA LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIVFNAIVDVLYAVI DPKIRY >gi|283548478|gb|GG730299.1| GENE 865 947392 - 948297 1117 301 aa, chain + ## HITS:1 COG:STM1744 KEGG:ns NR:ns ## COG: STM1744 COG1173 # Protein_GI_number: 16765088 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 301 2 302 302 517 97.0 1e-146 MLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQ FTYFDTDWGMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTL YGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR IVRGQTLSLKRKEFIEAAQVGGVSTVRIVIRHIVPNVLGVVVVYASLLVPSMILFESFLS FLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKD R >gi|283548478|gb|GG730299.1| GENE 866 948309 - 949322 589 337 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 34 317 33 311 329 231 43 1e-58 MSVIETSTAPLAQQQANALLNVKDLRVTFATPDGDVTAVNDLNFSLRAGETLGIVGESGS GKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPY MRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLGVVAGICDKVL VMYAGRTMEYGSARDVFYKPVHPYSIGLLNAVPRLDAEEEEMLTIPGNPPNLLRLPKGCP FQPRCPYAMEICSSAPPLEEFSPGRLRACFKPVEELV >gi|283548478|gb|GG730299.1| GENE 867 949319 - 950323 864 334 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 329 1 325 329 337 52 1e-90 MNTVTEQRKVLLEIADLKVHFDIKDGKQWFWQPSKSLKAVDGVTLRLYEGETLGVVGESG CGKSTFARAIIGLVKATDGKVAWLGKDLLGMKPDEWREVRSDIQMIFQDPLASLNPRMTI GEIIAEPLRTYHPKLPGQEVRDRVKAMMMKVGLLPNLINRYPHEFSGGQCQRIGIARALI LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL GHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDMERNKVIQLLEGELPSPINPPSGCVF RTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL >gi|283548478|gb|GG730299.1| GENE 868 950371 - 951207 506 278 aa, chain + ## HITS:1 COG:STM1741 KEGG:ns NR:ns ## COG: STM1741 COG1226 # Protein_GI_number: 16765085 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Salmonella typhimurium LT2 # 1 278 1 278 278 462 85.0 1e-130 MSGLVSSVRRALYRKLFDLNTRSGRRFEGMCALFALLSVIVIFVESGVGTQYHLTFEEWR VFVWLEIFITLVFTLEYLLRLCCWTNPAKYVFSFWGIIDLATILPLYVMWLWPEISLSYV FAWRAMRVLRVLRILKLLRFMPSLRIFWSAIKSARHQLILFYSFIAILMIVFGALMYLIE GPRYGFSTLNASVYWAIVTVTTVGYGDITPHTPLGRMVASVLILIGYSVIAIPTGLITTH MSSAFQHRQNQRKCPQCQQSEHEHSAQFCNRCGSKLPD >gi|283548478|gb|GG730299.1| GENE 869 951245 - 951574 524 109 aa, chain - ## HITS:1 COG:yciU KEGG:ns NR:ns ## COG: yciU COG3099 # Protein_GI_number: 16129209 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 109 27 135 135 197 94.0 3e-51 MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPAEDWQEH VDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKLCHILWRE >gi|283548478|gb|GG730299.1| GENE 870 951609 - 953069 1220 486 aa, chain - ## HITS:1 COG:STM1739 KEGG:ns NR:ns ## COG: STM1739 COG1502 # Protein_GI_number: 16765083 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Salmonella typhimurium LT2 # 1 486 1 486 486 963 97.0 0 MTTFYTVVSWLVILGYWVLIAGVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLSFGE LHLGKRRAERARAMWPSTAKWLNDLKACEHIFAQENSSVASSLFKLCERRQGIAGVKGNQ LQLLTSSDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQVAESLMAAARRGVHCRLMLD SAGSVAFFRSPWAAMMRNAGIEVVEALKVNLMRVFLRRMDLRQHRKMIMIDNYIAYTGSM NMVDPRFFKQDAGVGQWVDLMARMEGPVATAMGIVYSCDWEIETGKRILPPPPDVNIMPF EQASGHTIHTIASGPGFPEDLIHQALLTAAYSAREYLIMTTPYFVPSDDLLHAICTAAQR GVDVSIILPRKNDSLLVGWASRAFFTELLAAGVKIYQFEGGLLHTKSVLVDGELSLVGTV NLDMRSLWLNFEITLVIDDAGFGGDLAAVQDDYISRSRLLDARLWVKRPLWQRIAERLFY FFSPLL >gi|283548478|gb|GG730299.1| GENE 871 953212 - 953385 158 57 aa, chain + ## HITS:1 COG:no KEGG:ECIAI39_1585 NR:ns ## KEGG: ECIAI39_1585 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_IAI39 # Pathway: not_defined # 1 57 38 94 94 77 89.0 2e-13 MKRSRTEVGRWRMLRQASRRKARWLEGQSRRNMRIHTIRKCILNHQRNSLLFAIHGI >gi|283548478|gb|GG730299.1| GENE 872 953437 - 953733 220 98 aa, chain - ## HITS:1 COG:STM1738 KEGG:ns NR:ns ## COG: STM1738 COG2350 # Protein_GI_number: 16765082 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 98 1 98 98 175 93.0 2e-44 MLYVIYAQDIADSLDKRLSVRPAHLARLQLLHDEGRLLTAGPMPAVDSNDPGVAGFTGST VIAEFESLEAAQAWAEADPYVAAGVYAQVSVKPYKKVF >gi|283548478|gb|GG730299.1| GENE 873 953958 - 954674 566 238 aa, chain + ## HITS:1 COG:STM1737 KEGG:ns NR:ns ## COG: STM1737 COG0810 # Protein_GI_number: 16765081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein TonB, links inner and outer membranes # Organism: Salmonella typhimurium LT2 # 1 238 1 242 242 254 85.0 1e-67 MTLDLPRRFPWPTLLSVGIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVSPADLEPPQA VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKLVKKVVEQPKRDAKPAEPR PASPFENTAPARPTTSSAPATSKPAVSAPSGPRALSRNQPQYPARAQALRIEGRVKVKFD VTPDGRVENVEILSAQPANMFEREVKNAMRRWRYEAGKPGSGLVVNIVFRLNGATQIE >gi|283548478|gb|GG730299.1| GENE 874 954762 - 955163 416 133 aa, chain - ## HITS:1 COG:STM1736 KEGG:ns NR:ns ## COG: STM1736 COG1607 # Protein_GI_number: 16765080 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Salmonella typhimurium LT2 # 1 130 1 130 133 249 95.0 9e-67 MTTTNNTPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAIQAKEIAHGRVVTVRVE GMSFLRPVAVGDVVCCYARCVKRGTTSISINIEVWVKKVASEPIGQRYKATEALFIYVAV DKDGKPRPIPTLA >gi|283548478|gb|GG730299.1| GENE 875 955328 - 955867 557 179 aa, chain - ## HITS:1 COG:ECs1754 KEGG:ns NR:ns ## COG: ECs1754 COG2917 # Protein_GI_number: 15831008 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Intracellular septation protein A # Organism: Escherichia coli O157:H7 # 1 179 1 179 179 285 94.0 4e-77 MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAVVLIYSWVRYRKVEKMALITFVLVAV FGGLTIFFHNDEFIKWKVTVIYGLFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLN LAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLFFTLLSGVYIYRHLPQEDKS >gi|283548478|gb|GG730299.1| GENE 876 955922 - 956665 693 247 aa, chain - ## HITS:1 COG:no KEGG:CKO_01332 NR:ns ## KEGG: CKO_01332 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 247 1 247 247 355 95.0 6e-97 MSITAKSVYRDTGNFFRNQFITILLVSLLCAFITVVLGHAFSPTDAQIAQLSEGDQLTSS VGLFDLVQNMTPEQQQILLRASAASTFSGLIGNAILAGGIILMIQLISAGHRVSALRAIG ASAPVLPKLFILIFLTTLLVQIGIMLVVVPGILLAILLALAPVMLVQDKMGVFAAMRNSM RLAWSNMRLVAPAVIGWLLAKTLLLLFAPSFAVLTPNVGAVLANTLSNMISAVLLIYLFR LYMLIRQ >gi|283548478|gb|GG730299.1| GENE 877 956802 - 956960 70 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIQIKLELAFEILVKLIQINFDIFSLWKHLSLTGDKRCLFAHDAQRTTNVLA >gi|283548478|gb|GG730299.1| GENE 878 957064 - 957702 704 212 aa, chain + ## HITS:1 COG:ompW KEGG:ns NR:ns ## COG: ompW COG3047 # Protein_GI_number: 16129217 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein W # Organism: Escherichia coli K12 # 1 212 1 212 212 380 91.0 1e-105 MKKLTVAALALTTLLSGNAFAHEAGEFFIRAGSATVRPTEGAGGTLGSLGGFDVSNNTQL GLTFTYMATDNIGVELLAATPFRHKIGTAATGDIATVHHLPPTLMAQWYFGDSSSKLRPY VGVGVNYTTFFDEGFNNNGKDAGLSDLSLKDSWGAAGQVGMDYLINRDWLINMSVWYMDI DTTASYKLAGAQQHDSVRLDPWVFMFSAGYRF >gi|283548478|gb|GG730299.1| GENE 879 957834 - 958106 287 90 aa, chain + ## HITS:1 COG:no KEGG:CKO_01334 NR:ns ## KEGG: CKO_01334 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 90 2 91 91 118 65.0 8e-26 MLTRHQLQQKITLLEPFTGDDTVEFAVSVARELLNYMNKIEILEKVIATPVKLPYCSASP VCEIEAGYAAGVNDCREAIRRAGYPIEGDD >gi|283548478|gb|GG730299.1| GENE 880 958290 - 959762 1051 490 aa, chain + ## HITS:1 COG:ECs2095_2 KEGG:ns NR:ns ## COG: ECs2095_2 COG2199 # Protein_GI_number: 15831349 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli O157:H7 # 342 485 26 178 192 99 38.0 2e-20 MKIVQDKLRNRQALLVSGLITLIFTSLFLFIIYEQRIAAASEGVNRLQARMMDIFNDNEL IADAIGERYHHIKTGEQCGDISQFVPRNEDEWGINADPKRLHSATGTIIAQRTSHNALCM YTAAEFIRGMVNELNPGSFDAHRYIIAKNSDYFYWFMAADSRNFSFSNSEMARDITNFFY PPVDFYTRLLQKNVKNKALSSTNFYTDKITGEKAYSVVSYIYDLSGKEISDQIVAYLVYD HSKPELQEALTQAFDYHIPPALNVELVNLTNNESLCLSGRCTGQSRYMVRNFSEKYALHY SLSLGRFMARDSHAGIVILLAPFFFIIISFSLKSWLNESDLKVYIDTLTGCFNRRILDII KRRDLSHCSVVLLDCNKFKAVNDTWGHAAGDRALQIIANRMLSNTRTSHDIVIRTGGDEF MILLFRSQASDAIAIAQRISGQVSSHMFVVDGHTVPLSVSWGIAEVNGELDVAIQNADNA MYKMKNTKQG >gi|283548478|gb|GG730299.1| GENE 881 959795 - 960601 388 268 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1 249 1 248 263 154 35 2e-35 MERYDNLFAQLKDRKEGAFVPFVTLGDPSVEQSLKIIDTLIDAGADALELGIPFSDPLAD GPTIQEATLRAFAAGVTPSQCFEMLALIRQKHPTIPIGLLMYANLVFSKGIDEFYAQCEK VGVDSVLVADVPVEESAPFRTAALRHNIAPIFICPPNADEELLRQIASYGRGYTYLLSRA GVTGAENRAALPLHHLVEKLKKYGAPPSLQGFGISAPDQVTGAIEAGAAGAISGSAIVKI IEKNVAAPEQMLAELKAFVGAMKAATHR >gi|283548478|gb|GG730299.1| GENE 882 960601 - 961794 1377 397 aa, chain - ## HITS:1 COG:ECs1833 KEGG:ns NR:ns ## COG: ECs1833 COG0133 # Protein_GI_number: 15831087 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Escherichia coli O157:H7 # 1 397 1 397 397 776 96.0 0 MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFTDLLKNYAGRPTALT KCQNITQGTHTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASA LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS YDTAHYMLGTAAGPHPFPTIVREFQRMIGEETKAQILEKEGRLPDAVIACVGGGSNAIGM FADFINETSVGLIGVEPGGHGIESGEHGAPLKHGRVGIYFGMKSPMMQTEEGQIEESYSV SAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALK MMRENPEKEQLLVVNLSGRGDKDIFTVHDILKARGEI >gi|283548478|gb|GG730299.1| GENE 883 961805 - 963163 1207 452 aa, chain - ## HITS:1 COG:ZtrpC_1 KEGG:ns NR:ns ## COG: ZtrpC_1 COG0134 # Protein_GI_number: 15801916 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Escherichia coli O157:H7 EDL933 # 1 253 2 254 254 480 93.0 1e-135 MQTVLAKIVADKAIWVEARKQQQPLASFQNDVQPSSRDFYDALQGARTAFILECKKASPS KGVIRDDFDPAKIADVYKHYASAISVLTDEKYFQGSFDFLPIVSRIAPQPILCKDFIIDP YQIYLARFYQADACLLMLSVLDDEQYRQLAAVAHSLKMGVLTEVSNEEELERAIALGAKV VGINNRDLRDLSIDLNRTRQLAPRLGHGVTVISESGINTYGQVRELCHFANGFLIGSALM SHDDLHAAVRRVLLGENKVCGLTRAEDASAAYEAGAIYGGLIFVPTSPRAVSVEQARDVM SGAPLRYVGVFRNTGITDVCDKASALGLSAVQLHGSEDQTYIDALRDALPAQIQIWKALS VSETLPARDFQHVDKYVFDNGQGGSGQRFDWSLLSGQALDNVLLAGGLGADNCVNAAKTG CAGLDFNSGVESQPGIKDARLLASVFQTLRAY >gi|283548478|gb|GG730299.1| GENE 884 963167 - 964762 1766 531 aa, chain - ## HITS:1 COG:ECs1835_2 KEGG:ns NR:ns ## COG: ECs1835_2 COG0547 # Protein_GI_number: 15831089 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 197 531 1 335 335 589 97.0 1e-168 MADILLLDNIDSFTYNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGA PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF AGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHDTDRVCGFQFHPESILTTQGA LLLEQTLAWAQQKLEQTNTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALV SMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAAC GLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDDLGVCFLFAPKYHTGFRHA MPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGG MDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILSRLLQGKG EAAHEAAVAANVAMLMRLHGEEDLKTNAQTVINVLRSGAAYDRVTALAARG >gi|283548478|gb|GG730299.1| GENE 885 964762 - 966324 1579 520 aa, chain - ## HITS:1 COG:STM1723 KEGG:ns NR:ns ## COG: STM1723 COG0147 # Protein_GI_number: 16765067 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Salmonella typhimurium LT2 # 1 520 1 520 520 935 91.0 0 MQTQKPTLELLTCDAAYRENPTALFHQVCGARPATLLLESADIDSKDDLKSLLLVDSALR ITALGDTVTIQALSANGASLLPLLDAALPAGVENQQQPNLRHLKFPSVSPLLDEDARLCS LSVFDAFRLLQELVNVPAQEREAMFFGGLFSYDLVAGFEDLPLLEAGNRCPDYCFYLAET LMVIDHQKKSTRIQASVFTPSEAEKQRLNARLAQLSQQLTEPAPPLPVTEVPQMRCECNQ SDEEFSAVVRGMQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDND FTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELEMRTDHKELS EHLMLVDLARNDLARICTPGSRYVADLTKVDRYSFVMHLVSRVVGELRSDLDVLHAYRAC MNMGTLSGAPKVRAMQLIAEAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVEDGIATV QAGAGIVLDSVGQSEADETRNKARAVLRAIATAHHAQETF >gi|283548478|gb|GG730299.1| GENE 886 966587 - 967477 520 296 aa, chain + ## HITS:1 COG:STM1721 KEGG:ns NR:ns ## COG: STM1721 COG0613 # Protein_GI_number: 16765065 # Func_class: R General function prediction only # Function: Predicted metal-dependent phosphoesterases (PHP family) # Organism: Salmonella typhimurium LT2 # 1 293 1 293 293 535 92.0 1e-152 MGAALSDTNYAVIYDLHSHTTASDGRLTPEALVHRAVEMRVGTLAITDHDTTAGIAAARE EISRSGLALNLISGVEISTVWENHEIHIVGLNIDIAHPLMCEFLTQQTERRQQRARLIAE RLEKAHIPGAWEGALRLADGGAVTRGHFARFLVECGKATTIADVFKKYLARGKTGYVPPQ WCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVAHFAEHRGDAMEVAQCQQSPNER THLATLARQHQLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPEITERKV >gi|283548478|gb|GG730299.1| GENE 887 967474 - 968094 771 206 aa, chain + ## HITS:1 COG:STM1720 KEGG:ns NR:ns ## COG: STM1720 COG0009 # Protein_GI_number: 16765064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Salmonella typhimurium LT2 # 1 206 1 206 206 405 95.0 1e-113 MSQFFYIHPENPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLP DGHNFTLMCRDLSELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG LRVPSNPIALALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQQ PTTVIDLTDDSPVVLREGVGDVKPFL >gi|283548478|gb|GG730299.1| GENE 888 968195 - 969070 1128 291 aa, chain + ## HITS:1 COG:yciL KEGG:ns NR:ns ## COG: yciL COG1187 # Protein_GI_number: 16129230 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli K12 # 1 291 1 291 291 525 96.0 1e-149 MSEKLQKVLARAGHGSRREIESIIAAGRVSVDGKIATLGDRVEVTPGLKIRIDGHLISVK ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRDARWIAVGRLDVNTCGLLLFT TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL RELVELKPETTSKVAVEKDRRRMKANQIRRAVKRHSQVGGSRRPGGRSNNG >gi|283548478|gb|GG730299.1| GENE 889 969154 - 969744 547 196 aa, chain - ## HITS:1 COG:STM1718 KEGG:ns NR:ns ## COG: STM1718 COG2109 # Protein_GI_number: 16765062 # Func_class: H Coenzyme transport and metabolism # Function: ATP:corrinoid adenosyltransferase # Organism: Salmonella typhimurium LT2 # 1 196 1 196 196 367 90.0 1e-102 MSEERYQQRQQRVKERVDARVAAASDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVG VVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRESDTAACMSVWEHGKRMLADAE LDMVILDELTYMVAYDYLPLEEVISALNTRPAHQTVIITGRGCHRDILELADTVSELRPV KHAFEAGVKAQMGIDY >gi|283548478|gb|GG730299.1| GENE 890 969741 - 970502 696 253 aa, chain - ## HITS:1 COG:STM1717 KEGG:ns NR:ns ## COG: STM1717 COG1028 # Protein_GI_number: 16765061 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 1 253 1 253 253 454 91.0 1e-128 MHYQPKQDLLQDRIILVTGASDGIGREAAQTYARYGATVILLGRNDEKLRQVARAIADEN GTQPHWFTLDLLTCTADGCHQLAQRIAAHFPRLDGVLHNAGLLGDIGPMSEQNPQVWQAV MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYATSKFATEGMMQVLA DEYQNRHLRVNCINPGGTRTGMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMT FDAQPGRKPGIAQ >gi|283548478|gb|GG730299.1| GENE 891 970724 - 971770 1107 348 aa, chain + ## HITS:1 COG:STM1716 KEGG:ns NR:ns ## COG: STM1716 COG0616 # Protein_GI_number: 16765060 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Salmonella typhimurium LT2 # 1 348 1 348 348 546 89.0 1e-155 MELLSEYGLFLAKIVTVVVAIAVVAMLIVNATQRKRQRGELRVINLSDQYKEMKEDLSLA LLDGHQQKFWHKAQKKKHKLEAKAAKAKAKQGDSSSSDKPRVWVLDFKGSMDAHEVSALR EEVTAVLAVVKPQDQVVVRLESPGGVVHGYGLAASQLQRLRDKQIPLTVTVDKVAASGGY MMACVADKIVSAPFAIVGSIGVVAQIPNFNRFLKGKDIDIELHTAGQYKRTLTLLGENTE EGRQKFREDLNETHHLFKDFVQRMRPALDIEQVATGEHWFGQQALANGLVDEINTSDEVI LALMEGREVLSVRYIQRKKLMDRFTGSAAESADRLLLRWWQRGQKPLM >gi|283548478|gb|GG730299.1| GENE 892 971879 - 972130 409 83 aa, chain - ## HITS:1 COG:no KEGG:CKO_01350 NR:ns ## KEGG: CKO_01350 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 83 1 83 83 160 98.0 1e-38 MHKETQPIDRETLLIEANKIIREHEDTLAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPK STAVFNMFKHLAHVLSEKYHLID >gi|283548478|gb|GG730299.1| GENE 893 972529 - 975126 2637 865 aa, chain + ## HITS:1 COG:STM1714_1 KEGG:ns NR:ns ## COG: STM1714_1 COG0550 # Protein_GI_number: 16765058 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Salmonella typhimurium LT2 # 1 592 1 592 592 1123 95.0 0 MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEINANTTTPGGDALPLEVTH QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSRPSAPFITSTLQQAASTRLGFG VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVREYISDNFGKKYLPESANQYASKEN SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLVELTPAQHFTKPPARFSEA SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV AAEKDGKATGWSAFFVDGKWVEGKK >gi|283548478|gb|GG730299.1| GENE 894 975335 - 976309 1067 324 aa, chain + ## HITS:1 COG:STM1713 KEGG:ns NR:ns ## COG: STM1713 COG0583 # Protein_GI_number: 16765057 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 324 1 324 324 625 95.0 1e-179 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT PAGQEVIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP RVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAG NTSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLEPRIVFTATDADVIKTYVRLGLGV GVIASMAVDPISDPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV DTAVALRSNDDIEAMFKDIKLPEK >gi|283548478|gb|GG730299.1| GENE 895 976675 - 976764 84 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRKAWLAVFLGSAVFWIVVALVVWQVWG >gi|283548478|gb|GG730299.1| GENE 896 976768 - 976935 149 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283832917|ref|ZP_06352658.1| ## NR: gi|283832917|ref|ZP_06352658.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 55 1 55 55 66 100.0 8e-10 MSAPEQRSTVTPSPQDHEPESNTAAENGPQIPPSWTLSPEQRAFIDLFTDDEQKQ >gi|283548478|gb|GG730299.1| GENE 897 977242 - 979917 2679 891 aa, chain + ## HITS:1 COG:acnA KEGG:ns NR:ns ## COG: acnA COG1048 # Protein_GI_number: 16129237 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1 890 1 890 891 1669 92.0 0 MSSTLREASKDTLQVNDKTYRYYSLPLAAKTLGDITRLPKSLKVLLENLLRWQDENTVTE DDIHALAHWLKTAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPL SPVDLVIDHSVTVDRFGDDDAFEENVRLEMERNHERYVFLKWGQQAFSRFSVVPPGTGIC HQVNLEYLGKAVWSELQNGEWVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ PVSMLIPDVVGFKLVGKLREGITATDLVLTVTQMLRKHGVVGKFVEFYGDGLDTLPLADR ATIANMSPEYGATCGFFPIDDITLEYMRLSGRSEEQVELVGAYAKAQGMWRNPGDEPVFT SSLELDMGSVEASLAGPKRPQDRVALADVPKAFSASNELEVNSSLKDRQPVDYTMNGHQY QLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYL AQAGFTPYLDELGFNLVGYGCTTCIGNSGPLPDPIETAIKKGDLTVGAVLSGNRNFEGRI HPLVKTNWLASPPLVVAYALAGNMNINLTKDPLGHDRKGDPVYLKDIWPTAQEIARAVEQ VSTAMFHKEYAEVFEGTPEWKAIQVDRADTYGWQSDSTYIRLSPFFDGMQATPDPVQDIH GARILAMLGDSVTTDHISPAGSIKADSPAGRYLQSHGVERKDFNSYGSRRGNHEVMMRGT FANIRIRNEMVPGVEGGMTRHLPGTEVVSIYDAAMQYQQENVPLAVIAGKEYGSGSSRDW AAKGPRLLGVRVVIAESFERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEAIDITDLQN IKPGATVPVSLVRADGSKEVILCRCRIDTATELTYYQNDGILHYVIRNMLN >gi|283548478|gb|GG730299.1| GENE 898 979968 - 980558 777 196 aa, chain - ## HITS:1 COG:STM1711 KEGG:ns NR:ns ## COG: STM1711 COG0807 # Protein_GI_number: 16765055 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Salmonella typhimurium LT2 # 1 196 1 196 196 389 96.0 1e-108 MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALIFGDITGQTPVLARVHSECLTGDAL FSLRCDCGFQLEAALTHIAEEGRGILLYHRQEGRNIGLLNKIRAYALQDQGYDTVEANHQ LGFAADERDFTLCADMFKLLGVDEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPKNE HYLDTKAAKMGHLLSK >gi|283548478|gb|GG730299.1| GENE 899 980760 - 981530 536 256 aa, chain + ## HITS:1 COG:STM1710 KEGG:ns NR:ns ## COG: STM1710 COG0671 # Protein_GI_number: 16765054 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Salmonella typhimurium LT2 # 1 254 1 254 254 402 86.0 1e-112 MLSIAKRTAVGAGLLLIMPIAVWVSGWSWQPGHNVWWLKSLYWVTETVTQPWGIITHVAL CAWFLWCLRFRLKAAIMLFAILAAAILVGQGVKSWVKDRVQEPRPFVVWLEKTHHIPVDE FYTLKRKDRGHLVKEQLAEQRDIPTFLRKHWQKETGFAFPSGHTMFAASWALLAVGLLWP RRRTLTIVFLLIWATGVMGSRLLLGMHWPRDLVVATLISWLLVTLATWLAQRVCGPLTPP AQETKEIAQREQESQP >gi|283548478|gb|GG730299.1| GENE 900 981674 - 981982 201 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133578|ref|ZP_00203203.1| COG3771: Predicted membrane protein [Haemophilus influenzae R2866] # 1 89 2 90 97 82 37 1e-13 MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLIC GLFWLKVRVSLARAERKIKRLENQLAPATDVAVSADSSVVKE >gi|283548478|gb|GG730299.1| GENE 901 981989 - 983158 1237 389 aa, chain + ## HITS:1 COG:ECs1853 KEGG:ns NR:ns ## COG: ECs1853 COG2956 # Protein_GI_number: 15831107 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted N-acetylglucosaminyl transferase # Organism: Escherichia coli O157:H7 # 10 389 10 389 389 687 93.0 0 MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAA GLYDRAEDMFNQLTDETDFRVGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRIEIA HFYCELALQQMANDDMDRAMTLLKKGAAADKNSARVSIMMGRVYMLNGDYAKAVESLQRV ISQDKELVSETLEMLQSCYQHLGKNDEWAEFLRRAVEENTGAAAELMLADILEAREGSDT AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKC GFTAYTLYWHCPSCRSWSTIKPIRGLDGL >gi|283548478|gb|GG730299.1| GENE 902 983348 - 984085 579 245 aa, chain + ## HITS:1 COG:ECs1854 KEGG:ns NR:ns ## COG: ECs1854 COG0284 # Protein_GI_number: 15831108 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 410 90.0 1e-114 MTFTASSSSRAVTDSPVVVALDYSNRDKALAFVDRIDPRDCRLKVGKEMFTLFGPQLVRE LQQRGFDVFLDLKFHDIPNTTAHAVAAAADLGVWMVNVHASGGARMMTAAREALLPFGKD APLLIAVTVLTSMEASDLADLGVTLSPAQHAERLARLTQNCGLDGVVCSAQEAVRFKQAF GQAFKLVTPGIRPEGSEAGDQRRIMTPEQAQLAGVDYMVIGRPVTQSADPARTLKTIYAS LKRGA >gi|283548478|gb|GG730299.1| GENE 903 984086 - 984412 361 108 aa, chain + ## HITS:1 COG:yciH KEGG:ns NR:ns ## COG: yciH COG0023 # Protein_GI_number: 16129243 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 1 (eIF-1/SUI1) and related proteins # Organism: Escherichia coli K12 # 1 108 2 109 109 162 89.0 2e-40 MNDSNSRLVYSTDSGRIDEPKTAPDRPKGDGIVRIQRQTSGRKGKGVCLITGIDQDDAGL AKLAAELKKKCGCGGAVKDGVIEIQGDKRDLIKSLLEAKGMKVKLAGG >gi|283548478|gb|GG730299.1| GENE 904 984507 - 984725 321 72 aa, chain - ## HITS:1 COG:no KEGG:ECBD_2336 NR:ns ## KEGG: ECBD_2336 # Name: not_defined # Def: lipoprotein # Organism: E.coli_BL21_DE3 # Pathway: not_defined # 1 72 1 72 72 71 93.0 1e-11 MLVTSKKMTAAILALTLAMSLSACSNWSKRDRNTAIGAGAGAIGGAVLTDGSTLGTLGGA AVGGIIGHQVGK >gi|283548478|gb|GG730299.1| GENE 905 984994 - 985746 680 250 aa, chain - ## HITS:1 COG:STM1704 KEGG:ns NR:ns ## COG: STM1704 COG1349 # Protein_GI_number: 16765048 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 248 1 248 250 431 90.0 1e-121 MNSRQQSILQMVTDKGQMSVADLAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLNSD DVETRMMTNFTLKRELAEFAASLVNPGESVFIENGSSNALLARTLAEQKDVTIITVSSYI AHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIQQVHFSKAFIGIDGWQPDTGFTGRDM MRSDVVNAVLEKGAEVIVLTDSSKFDAIHPYTLGPLERFSRVVTDSKLSASVQMQLEHSG LTVNIIDTHA >gi|283548478|gb|GG730299.1| GENE 906 985828 - 986010 179 60 aa, chain - ## HITS:1 COG:no KEGG:CKO_01370 NR:ns ## KEGG: CKO_01370 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 60 4 63 63 90 85.0 2e-17 MSDIDAQRLAERIDTVLDILVAGDYHSAIHNLEILKTELLNTVKEDTQSLSAKPKAPWEI >gi|283548478|gb|GG730299.1| GENE 907 986193 - 988184 1718 663 aa, chain - ## HITS:1 COG:yciR_3 KEGG:ns NR:ns ## COG: yciR_3 COG2200 # Protein_GI_number: 16129246 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 401 660 1 260 261 497 92.0 1e-140 MKDVRERVTLYSYVGTHNPYWRLSEDCNILHFSLDETSKVDQTVELSAEQADRIREMTVI TSSLLMTLLIDDDDIPVHLVGRKINKREWAGSASAWDDTPSVARDLAHGLSFAEQVVSEA NSVIVILDRMGNIQRFNRLCEEYTGLKEREVIGQSVFTLFMSRREAAASRRNIEVFFREG NSYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFLICSGTDITEERRAQERLRVLANTD SITGLPNRNAIHELIGNAIENAGDTQVGIVYLDLDNFKKVNDAYGHMFGDQLLQSVSLAI LSCLDDNQLLARFGGDEFIVLATETSQSALEATASRILTRLRQPFRIGLIEVYTGCSIGI SLAPQHGQDCESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV RQVAKWRAKGINLRVAVNVSARQLADQTLFTALKQVLHDLNFEYCPIDVELTESSLIENE QLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPLDAIKLDQTFVRDVHKQPISQSLV RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAAAFERWYRRHLNK KTR >gi|283548478|gb|GG730299.1| GENE 908 988449 - 990383 2226 644 aa, chain - ## HITS:1 COG:STM1702 KEGG:ns NR:ns ## COG: STM1702 COG4776 # Protein_GI_number: 16765046 # Func_class: K Transcription # Function: Exoribonuclease II # Organism: Salmonella typhimurium LT2 # 1 644 1 644 644 1213 93.0 0 MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI VAVIHTEKDRESAEPEELIEPFLTRFVGKVQGKNDRLSIVPDHPLLKEAIPCRAARGVEH EFKEGDWAVAEMRRHPLKGDRTFFAELTQFITFADDHFVPWWVTLARHNLEKEAPDGVAT EMLDEGLVRQDLTALNFVTIDSASTEDMDDALYAEELADGKLQLTVAIADPTAWIAEGSK LDKTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTIAADGTIEDNITF FAATIESKAKLVYDNVSDWLEGTGDWQPENDAIAEQIRLLHRICLSRGEWRHNHALVFKD RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDTLGFGIYNVHMGFD PANADALAALLKTHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETIARPQDDTPLQMAERRRLNRM AERDVGDWLYARFLSDKAGTDARFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE LVCSQESGTVQIKGEVVYKVTDVIDVTIAEVRMETRSVIARPAA >gi|283548478|gb|GG730299.1| GENE 909 990473 - 991603 526 376 aa, chain - ## HITS:1 COG:yciW_1 KEGG:ns NR:ns ## COG: yciW_1 COG4950 # Protein_GI_number: 16129248 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 206 27 232 236 278 67.0 2e-74 MEQRRIVGKSHWYHETQSSTYPQDVLPLVPEAAHVDDSFLLDLAIPHDVLLPFQSWLTPA RKLAQLLFPAHVVLDRMHTFSAYERMSTALTVAQVYGVQRLCNHYAARLTPLPGPDSSRE SNHRLAQITQYARQLATSPAVIGVRDRQHLDAVGLTICDSILMNQIIGFVGFQARVVAVF QACCAHPIRRIPGLDIQQFAHASPFSATNATWHAAPLEPGQQHTRADYPNQLHALAPLLT HSPAVVDLLGSLISSTLRSDIPPQAFSLATLMTSRINGSVACFNEHAHTATDLADIITVL RQDERELQRWEQRHPVERVTLQAVQWLTRAPDRFSAALLTPLFDQSISSEQAINLLAWSG LCGWLNRLKIALGETY >gi|283548478|gb|GG730299.1| GENE 910 991816 - 992604 839 262 aa, chain - ## HITS:1 COG:ECs1861 KEGG:ns NR:ns ## COG: ECs1861 COG0623 # Protein_GI_number: 15831115 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 486 96.0 1e-137 MGFLSGKRILVTGLASKLSIAWGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSSIV LQCDVAEDASIDAMFAALGQSWPKFDGFVHSIGFAPADQLDGDYVNAVTREGFKIAHDIS AYSFVAMAKACRSILNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPE GVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI SGEVVHVDGGFSIAAMNELELK >gi|283548478|gb|GG730299.1| GENE 911 992719 - 992874 67 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085298|ref|ZP_06571011.1| ## NR: gi|291085298|ref|ZP_06571011.1| CytOchrome o ubiquinol oxidase subunit II [Citrobacter youngae ATCC 29220] CytOchrome o ubiquinol oxidase subunit II [Citrobacter youngae ATCC 29220] # 1 51 1 51 51 84 100.0 2e-15 MVISLKWQWLFVAYHDDMAFPDYASPDRIALRVMRKYKVSKALKWYYSGAS >gi|283548478|gb|GG730299.1| GENE 912 993047 - 993718 442 223 aa, chain + ## HITS:1 COG:STM1697 KEGG:ns NR:ns ## COG: STM1697 COG2200 # Protein_GI_number: 16765040 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Salmonella typhimurium LT2 # 1 178 1 178 198 183 49.0 2e-46 MHYHFIAEPMRDTTGKLLGVEMSARFAADTVRPLHADFIISAWNSEQKRNFMLEQIQLIA DKRGWFENNNLLCTLHLFDEMALLAIGDPAIRSALHAMPFIALELSERFLSSTICLNNLL INSLRDGPNALWLGDLGSGNVGASPLVCGHFDVVKLDRGFFLEQAEKPMFPVLIKNIREY CDRVAVEGVETSRLADEVSAAGVWAIQGSIFPSVAFSEVETLR >gi|283548478|gb|GG730299.1| GENE 913 993776 - 994594 443 272 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 256 3 263 329 175 34 1e-41 RESEMVETLLEVRNLSKTFRYRTGLFRRQTVEAVKPLSFTLRERQTLAVIGENGSGKSTL AKMLAGMIEPTSGELLIDDHPLKYGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLR LNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADE ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTA DVLASPLHELTRRLISGHFGEALTADAWRQDR >gi|283548478|gb|GG730299.1| GENE 914 994584 - 995576 470 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 14 321 31 324 329 185 36 7e-45 MPLLDIRNLTIEFRTGDDWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVAKDN WRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERIGRQLMQNIPAWT YKGRWWQRIGWRKRRAIELLHRVGIKDHKDAMRSFPYELTDGECQKVMIAIALANQPRLL IADEPTNAMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVMYCGQTVET APSKDLVTIPHHPYTQALIRAIPDFGSAMPHKSRLNTMPGAIPLLEQLPIGCRLGPRCPY AQRECIETPRLTGAKNHLYACHFPLNMERE >gi|283548478|gb|GG730299.1| GENE 915 995576 - 996466 1152 296 aa, chain - ## HITS:1 COG:STM1694 KEGG:ns NR:ns ## COG: STM1694 COG4171 # Protein_GI_number: 16765037 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 296 1 296 296 518 94.0 1e-147 MPYDSVYSEKRPPGTLRTAWRNFYGDASAMIGLYGCAGLAILCIFGGWFAPYGIDQQFLG YQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLLLGVVA GATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLTHAMFAVWLALLPRMVRSVYSM VHDELEKEYVIAARLDGATTLNILWFAVLPNITAGLITEITRALSMAILDIAALGFLDLG AQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLINLLGDGVRRAIIAGVE >gi|283548478|gb|GG730299.1| GENE 916 996453 - 997418 581 321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 1 318 1 317 320 228 35 9e-58 MIIFTLRRFLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSS INGQLISEQLKEVFPATMELCILAFGFALMVGIPIGMLAGITRNKWQDRCISALALMGFS IPVFWLALLLTLLFSLTLGWLPVSGRFDLLYEVKPVTGFAIIDAWLTDSPWRDEMLVSAI RHMVLPVLTLSVAPTTEVIRLMRISTIEVFDQNYVKAAATRGLSRLTILRRHVLHNALPP VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVIGSLVIIVNV ISDILGAMANPLKHKEWYALR >gi|283548478|gb|GG730299.1| GENE 917 997415 - 999058 1410 547 aa, chain - ## HITS:1 COG:STM1692 KEGG:ns NR:ns ## COG: STM1692 COG4166 # Protein_GI_number: 16765035 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 547 1 549 549 1005 92.0 0 MRLVLSSLIVMAGFLSGQAAAAPEQASHADIRDSGFVYCVSGQVNTFNPQKASSGLIVDT LAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHLRRDVPFQKTAWFTPTRKLNA DDVVFTFERIFDRQHPWHNVNGSSFPYFDSLQFADNVQSVRKLDNYTVEFRLTQPDASFL WHLATHYASVMSAEYADKLAKQDRQELLDRQPVGTGPYQLSENRAGQYIRLQRHEKFWRG TPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLSILRDDPRLRLTLRPGMNIAYL AFNTDKPPLNNPAVRHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKITEYN PEKSREQLKALGLENLTLQLWVPTSSQAWNPSPLKTAELIQADMAQVGVKVKIIPVEGRF QEARLMDMNHDLTLSGWATDSNDPDSFFRPLLSCAAINSQTNFAHWCNPEFDSILRKALS SQQLSSRIDAYDEAQNILARELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVAREK NDEVKKP >gi|283548478|gb|GG730299.1| GENE 918 999400 - 999792 210 130 aa, chain - ## HITS:1 COG:STM1515 KEGG:ns NR:ns ## COG: STM1515 COG3111 # Protein_GI_number: 16764860 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 130 1 130 130 174 62.0 2e-44 MKISFAPLLCCFLLPSAFADDNGGLKKDTAPPPAHALDEGYRGTENARIMTVQQAKTMHD GATISLRGNLIEDQGGDKFIFRDKTGSITTLIPLAVFDGRTVKPDQMIRINGSLDAKTQP PVVRVNQMQK >gi|283548478|gb|GG730299.1| GENE 919 999922 - 1000437 246 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 21 161 758 898 904 99 38 7e-19 MNTQYNEAKTRNELTKQVANRLIERGLTLTTAESCTGGNLAAALCAEADTAEFYDIGVIT FSDRAKQKMLGVRASTLEKYSAVSEQTVIEMSEGIRAQAETDISIAISGYAGPQGGEDGT PAGTVWFAWNFRGQIITKREYFSGDCQDVIEKAVRFSLAVLLEEASAWKND >gi|283548478|gb|GG730299.1| GENE 920 1000622 - 1001530 655 302 aa, chain + ## HITS:1 COG:AGl509 KEGG:ns NR:ns ## COG: AGl509 COG1028 # Protein_GI_number: 15890360 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 300 24 306 308 360 63.0 2e-99 MTDQNKGKQTTNKTNSERFPLPPFPHQKQPFPGLAGKMQPRPDHGEESYQGSGRLTGRKV LITGGDSGIGRAVAIAYAREGADVAINYLPEEEDDAREVVDLIKKAGRNVAAIPGDIRDE SFCNHLVKQAVDALGGLDILVNNAGRQQFCESIEELTTDEFDATFKTNVYAMFWITKAAI PHFSRDSVIINTSSVQAYEPSEILLDYAQTKAAIVAFTKSLAKQLAPKGIRVNAVAPGPY WTVLQCCGGQPQEKIEKFGANAPLGRPGQPVEIAPLYVTLAAEENSYTSGQVWGSDGGTG TL >gi|283548478|gb|GG730299.1| GENE 921 1001606 - 1002250 446 214 aa, chain - ## HITS:1 COG:all3305 KEGG:ns NR:ns ## COG: all3305 COG1357 # Protein_GI_number: 17230797 # Func_class: S Function unknown # Function: Uncharacterized low-complexity proteins # Organism: Nostoc sp. PCC 7120 # 5 203 240 435 496 72 25.0 5e-13 MTLALVGEKIDRNRFTGVKVENSTFFNCDFSGTDLSGTEFIGCQFYDRESQKGCNFSRAI LKDAIFKSCDLSMADFRNASALGIEIRHCRAQGSDFRGASFMNMITTRTWFCSAYITNTN LSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFSSFDWRAANFTHCDLTNSE LGDLDVRGVDLQGVKLDSYQASLILERLGIAVIG >gi|283548478|gb|GG730299.1| GENE 922 1002346 - 1003320 858 324 aa, chain - ## HITS:1 COG:ECs1880 KEGG:ns NR:ns ## COG: ECs1880 COG1221 # Protein_GI_number: 15831134 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 324 6 330 330 567 87.0 1e-162 MAGYKDNLLGEANSFIEVLEQVSHLAPLDKPVLVIGERGTGKELIANRLHYLSTRWQGPF ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKL LRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVSEGTFRADLLDRLAFDVVQLPPLR ERQSDIMLMAEHFAIQMCREIGLPLFPGFTDEAKETLLHYRWPGNIRELKNVVERSVYRH GTSDYPLDEIVIDPFRRHATPPQAQETRTASVALPLDLREFQQQQEKEFLQTSLQQAKFN QKKAAELLGLTYHQLRALLKKHQL >gi|283548478|gb|GG730299.1| GENE 923 1003491 - 1004159 1037 222 aa, chain + ## HITS:1 COG:STM1690 KEGG:ns NR:ns ## COG: STM1690 COG1842 # Protein_GI_number: 16765033 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Salmonella typhimurium LT2 # 1 222 1 222 222 258 94.0 5e-69 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSNSARALAEKKQLSRR IEQASAQQAEWQEKAELALRKEKEDLARSALIEKQKLTDLIVSLEHEVTLVDDTLARMKK EIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA EAESHNFGKQKSLDQQFADLKADDEISEQLAQLKAKMQQDKQ >gi|283548478|gb|GG730299.1| GENE 924 1004214 - 1004438 324 74 aa, chain + ## HITS:1 COG:no KEGG:SG1427 NR:ns ## KEGG: SG1427 # Name: pspB # Def: phage shock protein B # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 74 1 74 74 124 91.0 1e-27 MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRGELSQSEQQRLVELNQDAQRMRERIQAL EDILDAEHPNWRDR >gi|283548478|gb|GG730299.1| GENE 925 1004438 - 1004797 381 119 aa, chain + ## HITS:1 COG:STM1688 KEGG:ns NR:ns ## COG: STM1688 COG1983 # Protein_GI_number: 16765031 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Putative stress-responsive transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 119 1 119 119 213 87.0 6e-56 MGGINLNKKLWRIPQQGMVKGVCAGIAHYLDVPVKLVRILVVLSVFFGLAFFTIVAYIVL TFVLDPMPDNVVSGEQQPSSGELLDSVDRELAASEKRLREMERYVTSDTFTLRSRFRQL >gi|283548478|gb|GG730299.1| GENE 926 1004806 - 1005036 169 76 aa, chain + ## HITS:1 COG:no KEGG:SARI_01283 NR:ns ## KEGG: SARI_01283 # Name: not_defined # Def: peripheral inner membrane phage-shock protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 75 8 82 83 110 88.0 3e-23 MNNRWQRAGQRVKPGFKLAGKLVLLTALRYGPAGVAGWAVKSVARRPLKMLLALALEPLL SRAAAKLSKRYSGNQP >gi|283548478|gb|GG730299.1| GENE 927 1005201 - 1006907 1456 568 aa, chain + ## HITS:1 COG:ycjM KEGG:ns NR:ns ## COG: ycjM COG0366 # Protein_GI_number: 16129270 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli K12 # 1 568 1 568 568 883 73.0 0 MGPLPREMKVNQKIQKCLSEVYGDTFTSLHYAALIARLDKSQKLIKKHRKAHWDEGDVVL ITYADQFNGDDKKPLPTFNQFYNEWLKSTFSHVHLLPFYPWSSDDGFSVINYYQVAEETG DWNDIKQLGESSRLMFDFVCNHMSAKSEWFNNYLQQLDGYEDFFIAMDPDTDLSNVTRPR ALPLLTPFTLKDNTVRHLWTTFSDDQIDLNYANPLVLLAMVDVLLNYLEQGADYVRLDAV GFMWKEPGTTCIHLEKTHQLIKLFRAIADCVAPGTAIVTETNVPHKDNISYYGNGRDEAH MVYQFSLPPLVLHAVQRQDATTLCKWAQSLELPSSETTWFNFLASHDGIGLNPLRGLLPE EEIMRLVTELQQEGALVNWKNNPDGSRSPYEINVTYMDALTPGNSSNTERFARFILAHAI LLSFPGVPAIYIQSILGSRNDYKGVEALGYNRAINRKKYHIRQIEAELADETNLRHAVYH ELSRLIVLRRSNKAFHPDSDFKINSVTAAVMQIKRTAETGEEITGLFNISGHTQTISIDI ENGLDLISGKTISGKELTLHAWQVMWVK >gi|283548478|gb|GG730299.1| GENE 928 1006924 - 1008216 1351 430 aa, chain + ## HITS:1 COG:ycjN KEGG:ns NR:ns ## COG: ycjN COG1653 # Protein_GI_number: 16129271 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 429 1 429 430 751 89.0 0 MLKAKIVLISALVSCALVSGCKDDKKSSVSIEFMHSSVEQERQAVIAKLIERFEKENPGI SVKQVPVEEDAYNTKVITLARSGSLPEVIETSHDYAKVMDKESLIDRKAVAQVINGVGEN AFYDGVLRIVRTEDGTAWTGVPVSAWIGGVWYRKDVLAKAGLQEPKNWQQLLDAAQKLND PANKKYGIALPTAESVLTEQSFSQFALSNQANVFDAQGKITLDTPEMAQALQYYRQLAMN TMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPANVGFMVPTEKNSAVYGMLTS LTITAGQKTEETAAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVNTATWKDNAVIKA LGELPDQLIAELPNIQVFGAVGDKNFTRMGDVTGSGVISTMVHNVTVGKADLSTTMKASQ SKLDDLVEQR >gi|283548478|gb|GG730299.1| GENE 929 1008267 - 1009118 873 283 aa, chain + ## HITS:1 COG:ycjO KEGG:ns NR:ns ## COG: ycjO COG1175 # Protein_GI_number: 16129272 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Escherichia coli K12 # 1 283 11 293 293 459 96.0 1e-129 MPFAMLLLAPSLLLLGGLVAWPMISNIEISFMRLPLNPNIDSTFVGLSNYIRILTDPGFW HSLWMTVWYTALVVAGSTVLGLGVAMFFNREFRLRKTARSLVILSYVTPSISLVFAWKYM FNNGYGIVNYLGVDLLHLYDQAPLWFDNPGSSFALVVLFAIWRYFPYAFISFLAILQTID KSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGV YLYKTAFAFNDLGKAAAISVVLFVIIFAVILLTRKRVNLNGNK >gi|283548478|gb|GG730299.1| GENE 930 1009105 - 1009947 943 280 aa, chain + ## HITS:1 COG:ycjP KEGG:ns NR:ns ## COG: ycjP COG0395 # Protein_GI_number: 16129273 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Escherichia coli K12 # 1 280 1 280 280 451 96.0 1e-126 MAINKRTLGRIGFYCGLIVFLGITLFPFFVMLMTSFKSAKEAISLHPTLLPQQWTLEHYI DIFNPMIFPFVDYFRNSLVVSVTSSVVAVFLGVLGAYALSRLRFKGRMTINASFYTVYMF SGILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDG LNRLQIIFRITVPLAMSGLVSVFVYCFMVAWNDYLFASIFLSSASNFTLPVGLNALFSTP DYIWGRMMAASLVTALPVVIMYALSERFIKSGLTAGGVKG >gi|283548478|gb|GG730299.1| GENE 931 1009975 - 1011027 1244 350 aa, chain + ## HITS:1 COG:ycjQ KEGG:ns NR:ns ## COG: ycjQ COG1063 # Protein_GI_number: 16129274 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 350 1 350 350 667 94.0 0 MKKLVATEPRVAALVEYEDRAVSANEVKVRVRFGAPKHGTEVVDFRAASPFIDEDFNGEW QMFMPRAEGAPRGIEFGKFQLGNMVVGDVIECGSDVTDYAVGDSVCGYGPLAETVIFNAV NNYKLRKMPEGSSWKNAVCYDPAQFAMSGVRDANVRVGDFVVIVGLGAIGQIAVQLAKKA GASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGMEIKKLTGKQGADVIIETSGYADAL QSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRI EETCWELLMNGYLNCEDLIDPVVTFASSPESYMQYVDRHPEKSIKMGVTF >gi|283548478|gb|GG730299.1| GENE 932 1011044 - 1011832 1078 262 aa, chain + ## HITS:1 COG:ycjR KEGG:ns NR:ns ## COG: ycjR COG1082 # Protein_GI_number: 16129275 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Escherichia coli K12 # 1 262 4 265 265 501 90.0 1e-142 MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNLEEVKAAIKETGLPVTTACG GYDGWIGDFIEERRLNGLQQITRILEALAEVGGQGIIVPAAWGMFTFRLPPMTSPRSLAG DRKAVSDSLIYLDKVAERTGTVVYLEPLNRYQDHMINTLADARRYIVENNLKHVQIIGDF YHMNIEEDDMAQALHDNRDLLGHVHIADNHRYQPGSGTLDFSALFDQLREDNYQGYVVYE GRVRAENLPEAYRQSLAWLRTC >gi|283548478|gb|GG730299.1| GENE 933 1011843 - 1012898 701 351 aa, chain + ## HITS:1 COG:ycjS KEGG:ns NR:ns ## COG: ycjS COG0673 # Protein_GI_number: 16129276 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Escherichia coli K12 # 1 351 1 351 351 634 84.0 0 MKSALTSAPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQLLAEKYGNPQV WDDPQTMLREAKPDIVSICSPNRFHYEHTMLALKAGCHVMCEKPPAMTPDEALEMCKTAR RMGKVLAYDFHHRFALDTQLLREQVMAGALGEIYVTNVRALRRCGVPGWGVFTNKALQGG GPLIDIGIHMLDAAMYVLGFPAVKRVNAHSYQRIGTRKSSGQFGAWDPTTYSVEDSLFGT IEFHNGGILRLETSFALNIPEQSIMNVNFCGDLAGATLFPAQVYTDRDGTLDVLFRREIA DDNRHFRSMEAFVNHVQGEPVAIADAEQGVVIQQLVAALYESAETGTYVDL >gi|283548478|gb|GG730299.1| GENE 934 1012910 - 1015171 1552 753 aa, chain + ## HITS:1 COG:ECs1895 KEGG:ns NR:ns ## COG: ECs1895 COG1554 # Protein_GI_number: 15831149 # Func_class: G Carbohydrate transport and metabolism # Function: Trehalose and maltose hydrolases (possible phosphorylases) # Organism: Escherichia coli O157:H7 # 2 753 7 755 755 1154 74.0 0 MLTEPAFCPHSLNKYASLMTTGNGYMGIRASHEEAYTLQTRGMYLAGLYHRAGKGEINEL VNLPDVVGVEIALNGEIFSLTSGVIESWHRELDFASGELRRSLVWRAPGGARFAIQSRRF VSAQKLPLFAMEVAVTPLDGDASIGISTGIDATITNHGRQHLDETQVRVFGQHLLQGIYT TQDNRNDIAIATFCDVDGGAQRCFTAKERRLLQHSSVQAKTGQRVTLTKISWIDWASERS LSLETWGRQSLRNLEACARQGYDALLAESSANWHAWWQSRRVQVSSADMGDQRALDYALY HLRVMTPDHDERSSIAAKGLTGEGYKGHVFWDTEVFLLPFHLFTEPNTARSLLRYRWHNL SGAREKARRNGWQGALFPWESARSGEEETPEFAAINIRTGLRQKVASAQAEHHLVADIAW AVINYWHATGDLNFMSREGITLLLETAKFWISRAVMVNDRLEIHDVIGPDEYTEHVNNNA FTSYMAWYNVEQALDFARRLGCSDETFSHRAEHFLRHLWRPEMLPDGVLPQDDTFLSKPA IDLSRYKAKAGKQTILLDYSRAEVNEMQILKQADVVMLTYMLPEQFTPQACLANLRFYEP RTIHDSSLSKAIHGIVAARCGDSEQGYRFWREGSLIDLGDDPHSCDDGIHAAATGAIWLG AIQGFAGVNVRHGELHLAPALPAHWQTLSFPLRWQGIGMQVTINKAEIRISSAERVILWV NGEELAVQGESVIRYDGVITSTYGTATTKKDDE >gi|283548478|gb|GG730299.1| GENE 935 1015168 - 1015836 424 222 aa, chain + ## HITS:1 COG:ECs1896 KEGG:ns NR:ns ## COG: ECs1896 COG0637 # Protein_GI_number: 15831150 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli O157:H7 # 3 220 1 218 219 331 75.0 8e-91 MILKPQAIIFDLDGVITDTAHLHFLAWRQVADEIGIAIDEAFNDSLKGISRGESLQRILH HGGKAGDFTTETCAQLAERKNRLYVHSLRQLTVDSVLPGIRELLVTLREERIPVGLASVS LNAPTILQALDLRAYFDFCADAALITRSKPDPEIFLAACAGLGVDPQQCIGIEDAQAGID AINACGMRSVGIGTGLNGASLQLPSTEFLTWPCLSAFWQHDK >gi|283548478|gb|GG730299.1| GENE 936 1015847 - 1016926 924 359 aa, chain + ## HITS:1 COG:ECs1897 KEGG:ns NR:ns ## COG: ECs1897 COG3839 # Protein_GI_number: 15831151 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 359 1 359 360 660 90.0 0 MAQLSLQHIQKIYDNQVHVVKDFNLEIEDKEFIVFVGPSGCGKSTTLRMIAGLEEISGGD LLIDGKRMNDVPAKSRNIAMVFQNYALYPHMTVYDNMAFGLKMQKIAPAVIEERVNWAAQ ILGLRDYLQRKPGALSGGQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISKL HQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQVGAPKTVYNHPANMFVAGFIGSPAM NFIRGAIDGNKFVTETLKLTIPENKLAQLKAQGYEHQAVILGIRPEDIHPQSNNENNVSA KISVAELTGAEFMLYTIVGGHELVVRAGAVNDYHAGENIIIHFDMAKCHFFDAETEVAI >gi|283548478|gb|GG730299.1| GENE 937 1017006 - 1017911 894 301 aa, chain + ## HITS:1 COG:no KEGG:SARI_01294 NR:ns ## KEGG: SARI_01294 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 301 1 301 301 541 90.0 1e-152 MKTLLSATALAMCAGMACAQAAEKNDWHFNIGAMYEIENVEGQGEDMDGLAEPSVYFNAS NGPWKISLAYYQEGPVDYSAGKRGTWFDRPELEVRYQFLESEDVNFGLTGGFRNYGYHYV NEPGKDTANMQRWKVQPDWDVKLTDDLRFSGWLAMYQFVNDLSTTGYSDSRVESETGLNY TFNETVGLTVNYYLERGFNIDDSRNNGEFSTQEIRAYLPLSLGNTTLTPYTRIGLDRWTN WDWQDDPEREGHDFNRLGLLYAYDFQNGLSMTLEYAYEWENHDEGERDRFHYAGIGVNYA F >gi|283548478|gb|GG730299.1| GENE 938 1017943 - 1018953 590 336 aa, chain - ## HITS:1 COG:ECs1899 KEGG:ns NR:ns ## COG: ECs1899 COG1609 # Protein_GI_number: 15831153 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 331 1 331 332 553 84.0 1e-157 MSPTIYDIARAAGVSKSTVSRVLNKQTNISPEALEKVLRAIDELQYQPNKLARALTSSGF DAIMVISTRSAKTTAGNPFFSEVLHAITAKAEEVGFDVILQTSRSTEDDLQKCESKIKQK LIKGIIMLSSPADESFFARLDKYNVPVVVIGKVEGEYANVYSVDTDNYRDSITLTNALIE SGHSNIACLHAPLDVHVSIDRVNGYKASLQSHNIKIRDEWIIDGGYTHETALLASRKLLS QQPLPDAVFATDSLKLMSLYRVAAENDIAIPQQLAVVGYSNELLSFMLTPVPGGIDVPTQ QLGEQSCNLLFNLIAGEKGLQNITVSTHISLADSLV >gi|283548478|gb|GG730299.1| GENE 939 1018980 - 1019153 71 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085306|ref|ZP_06571013.1| ## NR: gi|291085306|ref|ZP_06571013.1| hypothetical protein CIT292_06951 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_06951 [Citrobacter youngae ATCC 29220] # 17 57 1 41 41 80 100.0 3e-14 MADILWSSLPNDNNHGMLTEKSKGTSHNVLPVEQCDLLARTMIMQSQYFLKNWRIVL >gi|283548478|gb|GG730299.1| GENE 940 1019184 - 1019501 415 105 aa, chain + ## HITS:1 COG:pspE KEGG:ns NR:ns ## COG: pspE COG0607 # Protein_GI_number: 16129269 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 103 1 103 104 168 76.0 2e-42 MFKKGVLALALVIGMPVYAAEHWIDVRVPEQYQQQHIQGAVNIPLKELKARIATEVPDKT DTVKLYCNSGRQSGQAKDMLSEMGYTQVTNEGGINQIALPKVENN >gi|283548478|gb|GG730299.1| GENE 941 1019638 - 1021041 1249 467 aa, chain + ## HITS:1 COG:ECs1900 KEGG:ns NR:ns ## COG: ECs1900 COG3106 # Protein_GI_number: 15831154 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli O157:H7 # 3 467 1 465 465 926 95.0 0 MAMKRLKNELNSLVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLLNIHAGARLPLLSCV REERLLGVKRVPQRDFGIPRFTYDEGLAQLYGSPPTWPTPTRGVSEIRLALRYKSNDSLL RHFKDTSTLYLEIVDYPGEWLLDLLMLAQDYLSWSRQMTGLLQGQRGEWSARWRQLCQGL DPLAPADENRLAEIAAAWTEYLHQCKQQGLHFIQPGRFVLPGDMAGAPALQFFPWPDVEQ YGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHFLRFDRQIVLVDCLQPLNSGPQA FNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLFAATKADHVTVDQHANMVSLLQQLI QDAWQNAAFEGISMDCLGLASVQATTSGLIDVKGEKIPALRGNRLSDGAPLTVYPGEVPA RLPGQAFWDSQGFQFEAFRPQVMDVDKPLPHIRLDAALEFLIGDKLR >gi|283548478|gb|GG730299.1| GENE 942 1021038 - 1022099 1224 353 aa, chain + ## HITS:1 COG:ECs1901 KEGG:ns NR:ns ## COG: ECs1901 COG3768 # Protein_GI_number: 15831155 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 352 1 352 353 612 92.0 1e-175 MSEPLKPRIDFSGPLDVEQNAAFKAQQMFNEMEAQTFAPATLDEPLEDEGQAEAAIDAAL RPKRSLWRKMVMGGLALFGVSVVAQGVQWTMNAWQTQDWIALGGCAAGALIVGAGVGSVV TEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHE TQNDREIVSLYAHLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLIN RIASLYGIELGYYSRLRLFRLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIG AGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRRQLIGQVKETLQKNKSPRES >gi|283548478|gb|GG730299.1| GENE 943 1022246 - 1023790 1265 514 aa, chain + ## HITS:1 COG:STM1683 KEGG:ns NR:ns ## COG: STM1683 COG3283 # Protein_GI_number: 16765026 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of aromatic amino acids metabolism # Organism: Salmonella typhimurium LT2 # 1 513 1 513 513 947 93.0 0 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFAELEFTNFSSLMAEIRR ISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKSKIEMANPASCQLFAHTPERM RNHTAAQLINGFNFQRWLESNPQDSHSEHVVINGQNFLMEITPVHLQGENQEQMLTGAVV MLRSTIRMGRQLQNMTTQDLSAFSQIIAVSAKMKHVVEQARKLATLSAPLLITGNTGTGK DLFAHACHLASPRAAKPYLALNCASIPEDAVESELFGHAGEGKKGFFEQANGGSVLLDEI GEMSPSMQTKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGLFREDLYYRL NVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLK NAIYRALTQLEGYELRPQDILLPDYDAATVAVGEEVMEGSLDEITSRFERSVLTQLYMNY PSTRKLAKRLGVSHTAIANKLREYGLSQQKKSEE >gi|283548478|gb|GG730299.1| GENE 944 1023845 - 1024351 648 168 aa, chain - ## HITS:1 COG:STM1682 KEGG:ns NR:ns ## COG: STM1682 COG2077 # Protein_GI_number: 16765025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 1 168 1 168 168 287 88.0 6e-78 MSQTVHFQGNPVAVAGAIPQAGSKAQAFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGV CAASVRKFNQLATEIDNTVVLCISADLPFAHSRFCGAEGLSNVITLSTLRNAEFLKNYGV EIAEGPLKGLAARAVVVIDENDNVVFSQLVNEITNEPDYTAALDVLKA >gi|283548478|gb|GG730299.1| GENE 945 1024467 - 1025453 861 328 aa, chain + ## HITS:1 COG:ycjG KEGG:ns NR:ns ## COG: ycjG COG4948 # Protein_GI_number: 16129286 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 321 15 335 335 512 84.0 1e-145 MRTVKVYEEAWPLHTPFVIARGSRTEAHVVVVELTENGVTGVGECTPYPRYGESDASVLA QIMSIAPQLENGLTREALQTLLPAGAARNAVDCALWDLSARQQQLPLAELVGCELAEVVT TAQTVVIGTPEQMAASAAALWERGARLLKVKLDARLISERMVAIRTAVPDATIIVDANES WRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFVHPLPICADESCHTRSSLKALHGR YEMVNIKLDKTGGLTEALALAVDAREQGFALMLGCMLCTSRAISAALPLTPQVSFADFDG PTWLASDAEPALHFTTGQLHLQDASAKD >gi|283548478|gb|GG730299.1| GENE 946 1025407 - 1026135 276 242 aa, chain - ## HITS:1 COG:ECs1905 KEGG:ns NR:ns ## COG: ECs1905 COG2866 # Protein_GI_number: 15831159 # Func_class: E Amino acid transport and metabolism # Function: Predicted carboxypeptidase # Organism: Escherichia coli O157:H7 # 1 238 21 258 262 448 92.0 1e-126 MTATRPRAERGAFPPGTEHYGRSLLGAPLIWFPATAADRESGLILAGTHGDENASVVTLS CALRTLNPSLRRHHVVLAVNPDGCQLGLRANANGVDLNRNFPAANWKAGETVYRWNSSAE ERDVVLLTGKHPGSEPETQALCQLIHRIHPAWVVSFHDPLACIEDPRRSELGAWLAQSFE LPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLQAMSNLLRWHPEDGAV RS >gi|283548478|gb|GG730299.1| GENE 947 1026320 - 1027933 1461 537 aa, chain + ## HITS:1 COG:mppA KEGG:ns NR:ns ## COG: mppA COG4166 # Protein_GI_number: 16129290 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 1 537 8 544 544 1023 95.0 0 MQHSVSVTCCALLVSSISLSWAADVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQ VIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNAQWSDGTPVTAQDFVYSWQ RLVDPKTLSPFAWFAALAGINNAQAIIDGKVAPDKLGVSAVDARTLKVQLDKPLPWFANL TASFAFYPVQKANVESGKEWTKPGNLIGNGAYVLKDRVVNEKLVVVPNTHYWDNAKTVLQ KVTFLPINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQ KGPTADSRVRLALSMTIDRRLMAEKVLGTGEKPAWHFTPDVTAGFEPEPSPFEQMSQEEL NAQAKTLLRAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTY IDSRNTGNFDVIRASWVGDYNEPSTFLSLLTSTHTGNISRFNNPAYDKVLTQATMENTEK ARNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPITNPEDVAYSRTMYIVKH >gi|283548478|gb|GG730299.1| GENE 948 1028091 - 1028786 422 231 aa, chain - ## HITS:1 COG:STM1665 KEGG:ns NR:ns ## COG: STM1665 COG3382 # Protein_GI_number: 16765009 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 226 1 226 228 323 69.0 2e-88 MLTHSPSISPEVYRTAPGFRALSIYVKAAPVLNPDVGGAALREACEAVLAGKPEWAESHL TAWADVFQSFGAKPKRTPCSADALRKRVLRDGMMPALDPVVDLYNAVSLRYAVPVGGENI SAYQGAPRLTIAEGTEPFDTMKEGAPVIEYPSPGEVIWRDNVGVTCRRWNWRQGIRTRLS VEAQQMWFILESLPQMPLEKLHEAGRMLIDGLEKMMPGLWFEITLIEDQHQ >gi|283548478|gb|GG730299.1| GENE 949 1028830 - 1029432 378 200 aa, chain + ## HITS:1 COG:STM1664 KEGG:ns NR:ns ## COG: STM1664 COG1396 # Protein_GI_number: 16765008 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 199 1 199 200 274 67.0 1e-73 MTKKVNLVTDAGADVSTVNEAVSQRIKQYRKQKKMSLDELSRQANVSKGMLVEIEGCKAN PSIALLCRLAAAMGVSVADFVDVGTKPTVHLIAEDEIPELWKGDKGGRARLLAGSGGPDM TELWMWEMQPGEKFASPGHSMGTLELFYVQTGTLTLGVQDHLYLVNSGCSATARTDVPHF YENRGENPLIFIMTVNEKAS >gi|283548478|gb|GG730299.1| GENE 950 1029662 - 1030531 932 289 aa, chain + ## HITS:1 COG:STM1676 KEGG:ns NR:ns ## COG: STM1676 COG0656 # Protein_GI_number: 16765019 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 1 289 1 289 289 567 93.0 1e-161 MEYSVLSNNRKMPMVGFGVFKVTDKEECKQSVLSAIRTGYRLIDTAAVYSNEDAVGEAVR EAIAEGLCTREELFITSKLWVQDMANYDMAKAGIEASLKKSGLEYFDLYLLHQAMGDYFS AWRALEEAYEAGKLKAIGVSNFYAHVLANFCETVRIKPMVDQVELHPYFAQPVAIETMKR YNVQPEAWAPLGGGRHKPYEDEMLQGIADAHQKTIAQVVLRWNVQRGVTVIPKSTRQERI AENFAIWDFSLTDSEMAQISALDLGYVGEAVKHFNPEFVRGCLGVKIHD >gi|283548478|gb|GG730299.1| GENE 951 1031420 - 1033819 1901 799 aa, chain + ## HITS:1 COG:STM2530 KEGG:ns NR:ns ## COG: STM2530 COG0243 # Protein_GI_number: 16765850 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 794 10 800 801 1375 81.0 0 MSKHENNRDSEFLSVTRRGFLKAGSALVTLPFVMSGQAAASENDIGVATETGGTTERVVQ TCSTFDCGGKCDIRAHVADGVITQITTRPDGDLDPEMPIMRACVRGRSYRKFIYHPDRLK YPMKRVGKRGEGKFERISWDEATTIIADNLQRITAKYGPECRFVHNNTATSGGTFSGDKM IRRLLNLTGGYLEYYHSVSMGNTAAATPYTYGTVATGNSLDTLVDTKLVVLWGHNPTETI FGHTNHYFQQMKQNGTRFIVVDPRYSDTVASLADEWIPLLPSTDNALMDAMMYVIISENL HDKDFIDRYTLGFDESSMPEGVPANESLVAYLMGDKDGIVKNPEWAEKITHVPAQTIRQL ARDYANTKPAALIQGWGPQRHNCGERTARGSTLLATITGNVGIKGGWAAGYGGCGNRKFA AGPEMPENPVKENISIMNWVQAADDASKVTSEDGLKGADKLKSNIRILFSLAGNYLANQN PDLHQAVKVLEDDSKIEFIVVSDLYMTPSARYADILLPETSFMERWNIGETWGTANYLIL SEKLINPEFERRSDYDWQREVAAKLGIESQFSEGRTEQQWIEHIWEQTRLSMPDEHLPTF SELLKTRKHLFKSKPYIAFEDNIRDPQNNPFPTPSGKIEIFSKRLYDMNNPEIPALSHYV PAHEGPEDELAKQFPLQLITWKGKNRANSTQYANPWLQEVQVQKLWINPLDAEKRGIRQG DTVRIHNQRGICQVPAEVTMRIMPGVVAMQAGAWWQPDADGVDHGGCPNVLSSARITPLA KGNSHQTMLVEVAKYESAV >gi|283548478|gb|GG730299.1| GENE 952 1033803 - 1034435 459 210 aa, chain + ## HITS:1 COG:ECs3383 KEGG:ns NR:ns ## COG: ECs3383 COG0437 # Protein_GI_number: 15832637 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 4 210 3 209 209 362 85.0 1e-100 MSQQYKEYPPVSDKQLGFFIDSSRCSGCKACQVACKDKHNLEVGRRFRRVYEVKGGGFIP TGQGGMANNVYAYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAW SCPYGAPQMNEEAGQMSKCDFCVDLQAKGEQPICVATCPLGAIKFGPIDELRAKYGNLCD VQGLPDSSITHPNLVIKPHQGSEKEEQQNA >gi|283548478|gb|GG730299.1| GENE 953 1034428 - 1035261 733 277 aa, chain + ## HITS:1 COG:STM2528 KEGG:ns NR:ns ## COG: STM2528 COG3302 # Protein_GI_number: 16765848 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Salmonella typhimurium LT2 # 1 276 1 268 269 191 48.0 1e-48 MHELPLLIFTLLVQGSVGMTLFLTLCAGTANRVPEARVQLLPVMLTACVAGGLGLIASTL HLGYPLNAFNALRHVASSWLSREIVFASFYLAALGLCTLIMLVRKQLVSVLLPLAALLGL VDVWCMSSIYAHTSVITWTHFNTWLMFYGSVGVLGAVALAWLPLLKTQAVAEKRQSLMRL AAILVVAIIAVRLLAQPAYMSYLANVSLSGVVTLPHQPLDAFNQISGLRLFTWAVSVIGS LLFAISAWRNRSVGLLVGGLLLVISEVLFRFIFFSIN >gi|283548478|gb|GG730299.1| GENE 954 1035264 - 1036136 106 290 aa, chain + ## HITS:1 COG:ECs3381 KEGG:ns NR:ns ## COG: ECs3381 COG1145 # Protein_GI_number: 15832635 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Escherichia coli O157:H7 # 14 288 8 282 284 186 34.0 4e-47 MLFRLTKPSTPPGVGASCLRKKFPRHVCQACVSICPVNAISLSPAGPEINDDECIRCGNC LFACPVDALQNLQPATRKYKNFSLVAPFSSVAPSVGELLMWHYLHRIRSVEMEIDNYPGW VEAVAALNIRLREFNAPVWQILSPQPKAVDIARRRLLPTNEVDVQSGVVACGRRARRQAF HGMSEYQLSLDTLQCMLCGACSRACPEEAICFTDGAFEFSSSICTGCLSCEAVCPVQSIY IKRLPGEKSVSRLPYMEKRCDCCQRKFYTFSPEADCCPICQRHTYGMREA >gi|283548478|gb|GG730299.1| GENE 955 1036149 - 1036712 536 187 aa, chain - ## HITS:1 COG:PA0942 KEGG:ns NR:ns ## COG: PA0942 COG1846 # Protein_GI_number: 15596139 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pseudomonas aeruginosa # 1 183 1 183 186 224 61.0 7e-59 MHDMSLFDVLDRLSGLTRMWFRQHPLLADLQPVQLSALMYLARCNRYSNTPLGVTDYLGL TKGTVSQSLKLLESKGLIVRKQDSRDKRSVHLQLTASATTLLDALLPPTFLVAGETVMGE RATVLKELLLELLRGIQRTSNVPGFGLCHSCRFHQKIGGQGFCNLTKEALSEEDSLLICR EHQPPEI >gi|283548478|gb|GG730299.1| GENE 956 1036829 - 1037059 303 76 aa, chain + ## HITS:1 COG:PA0941 KEGG:ns NR:ns ## COG: PA0941 COG0526 # Protein_GI_number: 15596138 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Pseudomonas aeruginosa # 1 76 1 77 77 93 62.0 1e-19 MTKARFYHAGCPVCVSAEQALLQHLSSDVEIDVIHLGEQPGRVTEAEQAGVKSVPALVID GNVLHINFGAPIEALK >gi|283548478|gb|GG730299.1| GENE 957 1037126 - 1037395 255 89 aa, chain + ## HITS:1 COG:ECs0191 KEGG:ns NR:ns ## COG: ECs0191 COG4568 # Protein_GI_number: 15829445 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1 75 1 74 86 57 37.0 4e-09 MNVTGKYHPIDCELHDYLEIACLYHYWLRIELTDGSCMNATALTTCTTRDKEEFLVVEYN GNPLKIRLDRLSAIAALTAGATFSAVSFR >gi|283548478|gb|GG730299.1| GENE 958 1037382 - 1037585 163 67 aa, chain - ## HITS:1 COG:no KEGG:KPK_2325 NR:ns ## KEGG: KPK_2325 # Name: not_defined # Def: transcriptional regulator, DeoR family # Organism: K.pneumoniae_342 # Pathway: not_defined # 7 67 167 227 256 108 78.0 8e-23 MLTSLIIIFDQGFIGGCAMSPESGLTGFDYADCEFKKAVIKQCNETIVALTSEKIPAVAR YVITNES >gi|283548478|gb|GG730299.1| GENE 959 1037628 - 1037795 246 55 aa, chain + ## HITS:1 COG:no KEGG:Kvar_2282 NR:ns ## KEGG: Kvar_2282 # Name: not_defined # Def: glyoxalase/bleomycin resistance protein/dioxygenase # Organism: K.variicola # Pathway: not_defined # 1 53 1 53 127 82 69.0 6e-15 MKIAHMALWTQDLEQQARFWVMFFDGKVNEKYCSNTNPGFESYFVRIGDEIEIVA >gi|283548478|gb|GG730299.1| GENE 960 1037968 - 1038597 410 209 aa, chain + ## HITS:1 COG:XF1766 KEGG:ns NR:ns ## COG: XF1766 COG0599 # Protein_GI_number: 15838367 # Func_class: S Function unknown # Function: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit # Organism: Xylella fastidiosa 9a5c # 5 206 50 252 260 199 53.0 4e-51 MQHQLDARQQAIIPIAAFTATGQSEKLDAALNAGLDAGLTLNEAKEILLQLYAYCGFPRS LNGLACLMSVVKSRRERGITDAEGNSATPPTEGWDSFQAGSRTQTQLVGRQVSGPLFDFA PAIDVWLKAHLFGDIFQRDVLNWKMRELATVSALAVLGGVNSQLKSHFAISLNIGITTNQ LFEFIAILEQHCGADIATNARAVLDECRL >gi|283548478|gb|GG730299.1| GENE 961 1038638 - 1039690 1012 350 aa, chain + ## HITS:1 COG:PA2275 KEGG:ns NR:ns ## COG: PA2275 COG1064 # Protein_GI_number: 15597471 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Pseudomonas aeruginosa # 1 350 1 350 353 491 67.0 1e-139 MVMNVKGYAALAVKEDLVPHSFVRRDPREDDVVIDILYSGVCHSDIHNAYNDWGGAKYPM VPGHEIIGRVVHVGKSVTKFAVGDLAGVGCMVDSCQHCSACEQGLEQYCEEGNTLTYNDI DRHDGLPTFGGYSDKIVVTEKFVVKVPEGIDLRGAAPLLCAGITTWSPLRHWQVGEGSKV AVVGLGGLGHMAIKLANALGAEVTLFTRSPGKEADARRLGASHVVLSTDPEQMKASANQF DLIIDTVPYVHDLNPYLPTLALSGTLVLVGYLGALDPFLNTVPLILGRKSVAGSVIGGIA ETQEMLDFCGQHGITADVEVINIQDINSAWQRMLKSDVKYRFVIDIASLK >gi|283548478|gb|GG730299.1| GENE 962 1039730 - 1040761 543 343 aa, chain - ## HITS:1 COG:STM1663 KEGG:ns NR:ns ## COG: STM1663 COG0668 # Protein_GI_number: 16765007 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Salmonella typhimurium LT2 # 1 341 1 341 343 572 81.0 1e-163 MIAELFMNNAFNLTVILSCCAALVLMSVWYHRGEKRSKGFIFHAAQFFVYAIIIGTFGSI ANNVIESYRLKFISPGVVDFICTSLIALILTVKLFLMINQFEKTQINKGRDITSARILSR VIKITIVVAIILLYGEHFGMSLSGLLTFGGIGGIAVGMAGKDILSNFFSGIMLYFDRPFS IGDWIRSPDRNIEGTVTEIGWRMTKINTFDHRPLYVPNSIFSSISVENPGRMTNRRIKTV IGLRYEDADKIEAVVGAVRQMLQNHPGIDQKQTLLVYFNEFADSSLNIMVYCFTKTTVWQ EWLAVQQDVYLKIISIVQTNGADFAFPSQTLYMDNPETSPSAL >gi|283548478|gb|GG730299.1| GENE 963 1041006 - 1041266 345 86 aa, chain + ## HITS:1 COG:no KEGG:ROD_16741 NR:ns ## KEGG: ROD_16741 # Name: not_defined # Def: putative outer membrane protein # Organism: C.rodentium # Pathway: not_defined # 1 86 1 86 86 142 89.0 4e-33 MIMAKLKTAKGHKFLLCLLGVFIIAASVVTRATIGGVIEQYNIPLSDWTASMYAIQSAMI CVYSMVFTILLAIPLGIYFLGGDEKH >gi|283548478|gb|GG730299.1| GENE 964 1041312 - 1042262 1094 316 aa, chain - ## HITS:1 COG:STM1661 KEGG:ns NR:ns ## COG: STM1661 COG0589 # Protein_GI_number: 16765005 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Salmonella typhimurium LT2 # 1 315 1 315 315 611 96.0 1e-175 MAMYKNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDFSYEMTTLLSPDERTAM RQGVISQRTAWIREQAKYYIEAGIPLEIKVVWHNRPFEAIIQEVMSARHDLVLKMAHQHD RLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAVNLASEEAYHNALNEKLVKET LQLAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFSIDE KVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIK PDQYQTPVEMDDEDDD >gi|283548478|gb|GG730299.1| GENE 965 1042866 - 1047359 4219 1497 aa, chain + ## HITS:1 COG:STM2513_2 KEGG:ns NR:ns ## COG: STM2513_2 COG3468 # Protein_GI_number: 16765833 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Salmonella typhimurium LT2 # 1050 1497 2 476 476 520 66.0 1e-146 MEIGYSTVFYPTQTPHVVEPESDGIHTFSTLKKSAVALSVATVLYAMNFPVHAATTSPIE AGAGQIVTVSDDVVDSEFESAALYAHDGGGISSDGYNIQGGAAGSAIMASGGGIVNVTNA TLSGNVTTFVNVDSGGQVALGDIQFDAGTGHPSEYILETGTGSIVNLYDTTINNLDTMLA AVSDNAFLELGNVQISAVSGSGASMIDAQSGSSIQLSQSSLSADGSDVISLDSSSSLNVN DSSLSATDTSGSTGYTVVDLKNNANMTAYNTSFTLNGTGFAAISAIEDSLIDLSSDSVIN VQGSNTSGVYLMNNSQLQLFDSTINVTGDNNYAINDQSSNDKTVLQNATINTTGSGNTGL YATGNYEIDTSNIAVDGASSYGITGRGAVGGIVGSTITASGDNSSALLLDDATQTLVLGS KLESQDAAAIVLEDSYNGKTDLTLSHTRVVGDSGLAIQAQDDTANAGTLANTVNVDANAG TTIDGDVVVQSTNANSTFTLGLTNSTLTGAIDAAEYAGTAIANIDANSLWTVTGDSTLNQ VNNDGTIALTADTDSYSTLHADDLTLASTSTLDVDLGAAEQASDAQQPLITTGNATLAGN LNISNSAGNVPNLDSLTSDKQLQSVTLIDSDTAITTNFDSLTMDAGVAPDYLTIGGQVNP NDNTQYDLSVGLSWFAGGMLSASPASGTFTLDAGKSFEVTSDLYDVSATSDWDGKTLTKK GDGTLILSGDNTYSGGTDIQDGELVAASVDALGSGDIDNSGLLTLDADGAFMLSQNLVTE EGATTNIDRGSTLQVNTLTQESGSTLGVYLDLASSQPVITANQADLNGGTLNITGISDDP SHAYTGSVTVIDAAQPISGDFDSLTIAGAPASEVDFLNVEGRVDSNDNTNYDLTFGLTWY ADSYNSMVPADGSFTIADKDQSFTLGTVLQDVSPNSVSNWDGKTLTKKGDGTLILDANNT YSGTTYVQDGTLWLDPDASIGAAGSQQQVEISQGATFGGSDAAVVNGSVQNDGTLRFDDT FTINGDVTNSGAIASALPGTQSGSDAQPDNTLVINGNYTGNGGSLTLNTYLGDDTSPTDK MVVNGNTSGDTTLYINQAGGGGAQTTDGIEVVQVNGESDGVFTQGNQVQAGLYEYRLYQD DSNGDWYLRSQSTDPDNGGGDDGGNGGGDDGGNGGGDNGNTTPQYRADIGAYLGNQWMAR SLQMQTLYDREGSQYHNADGSVWARFKAGSADSQAAGGNVDIDNNYSQFQLGGDVLTWHG EEQSLTAGVMGSYINADTDSTGNRGADGSRFSANGNVKGYNLGIYATWFANAKTHNGAYV DSWYQYGTYSNHVDDGDVGSQDYDSTANAVSMEMGYRYDIALANQNLVSLTPQAQVVWQN YQADSVTDNSGTRIDGQNSDSWTTRLGLRVDSSLRKDEHATIQPFAEVNWLHTNDDTSVS FDNAEVKQDLPDNRAELKVGIQANINQQWSVTAQAAGQTGNDNYSDLNGSLNVRYRW >gi|283548478|gb|GG730299.1| GENE 966 1047613 - 1049487 2217 624 aa, chain - ## HITS:1 COG:STM2513_2 KEGG:ns NR:ns ## COG: STM2513_2 COG3468 # Protein_GI_number: 16765833 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Salmonella typhimurium LT2 # 181 624 2 476 476 541 71.0 1e-153 MDFINVEGRVDSADPTNYDLTFGLTWYADRYNSMVPADGTFTLSDASQSFTLGAVLEDVD PNSDSGWDGKTLTKKGAGTLILDAVDTYSGATNVEEGTLWLDPDASIGVAGSQQLVDVAQ GAAFGGDNATVNGNVENSGSLYFDDTLTVNGDVTNSGAIVSGSGTIPLPATQLTDSGQPD NTLVINGNYTGNGGSLTLNTYLGDDTSPTDKLVVNGNTSGDTTLYINQSGGEGAQTTDGI EVVQVNGESDGVFTQGNQVQAGLYEYRLYQDDSNGDWYLRSQSTTPTPDPDDGGDDGGDG GDGGDTPVTPQYRADIGAYLGNQWMARSLQMQTLYDREGSQYHSADGSVWARFKAGSADS QAASGNVDMDNNYSQFQLGGDILTWGNGEQSLTVGLMGSYINADTDSTGNRGADGSRFTA SGNVDGYNLGVYATWFADAQNHSGMYVDSWYQYGTFNNSVDDGDVGSQDYDSTANAVSLE TGYRYDITLSNNNAVSLTPQAQVTWQNYQADSVTDNSGTRIDGQNGDSWTSRLGLRVDGK LHKNPNSVIQPFMEANWLHTSDDTSVSFDNSDVKQDIPADRAELKAGIQANINQQWSVTA QVAGEKGSNDYDDLNGSLNLRYSW >gi|283548478|gb|GG730299.1| GENE 967 1049415 - 1052606 2887 1063 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B2662 NR:ns ## KEGG: SeAg_B2662 # Name: not_defined # Def: ShdA # Organism: S.enterica_Agona # Pathway: not_defined # 558 1034 931 1405 2057 143 34.0 4e-32 MGLSLENRMNRSYNIVWNAARNMYMVTAEFVHSGGGVRRQVRIATIALGALLSASAYSDP YSDVIGPQSGASITIDNNVDIESYDGTTGIDSTTAGGTGVQINGGSYVSVQGGSGSLIGV NLDNGTNNDLGSGSSITVDNTSTESPGTITGLLVGNQQDNTSITADHLQITINPTPASSG TAYGFEDIGQGGSTDLGQGSSIGVTTNGLNAYGVYLEDGSGDFSMDDGSVWVGNPEYGIA QNQTVGIDSLGDASVNLGSDTSVIAYGKSNVTGISIGNSGSLTADSNLSVTVNAQGGMVE DGIVLDNNSHADLGTGGWVYADGASGLVQGITVNSGSSFTADNYYITLETTNTNSPSARG ILLDDGGASADLGYDSTIELSGFYSGAGIDMMEGSGTFSADYLTIDASGKWVYGIQEDGG SMDLGVGSTVSATGEAETIWVTGGDFTARGLTVNTAQSTGINAQGGAADNVVVNIGGDSV VDGRNVAEGGSTNGISATYAGFGGSTTTLNFNGTAVNRNEIYAVNGYGASAQFGGQTINI SNTDITMSGDGKSLGLWAVGDNDMTSGGVINGENLNIDMTDTGANSVGVMVQQGGMINLT GDTTIITDGGVAIRNAKTTENNGATLLPGGTITGSGKMTIEGDIISDGWGSIDLTMAAGS DFTGATSVNDDITDLDPDAYSTLNLTLANKAQWTVTDDSSLTNLTSDGKVVLDSDMANGT YSTLDADTLTLQDDSELDVDYAAATQASLDGTPLITGGDITLDGDLKISDSTVSDLSDIT SDQQLAQGQIVLIDADSAINGNFSSLSMNSASQPDYLAFSGQINPNDDTQYLLGAGLSWY ADSASTISTTAAHGTFTLDAGKSFEVTSALVDVAPDATTGWDGKTLTKKGDGTLILSGDN TYSGGTDIEDGELLATNVNALGTGDIDNSGQLTLDANSDFDLTQNITTESGGVTQIDQGS TLTVNTLTQEDNSSLNVYLDLASTQPVITTQQANLDGTLNITGVADDPNHQYTGSVTVID SAQDITSDFDSLTIAGAPARWTLLTSKGASTARIQPTTTSPSA >gi|283548478|gb|GG730299.1| GENE 968 1053252 - 1054004 750 250 aa, chain - ## HITS:1 COG:STM1660 KEGG:ns NR:ns ## COG: STM1660 COG0664 # Protein_GI_number: 16765004 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Salmonella typhimurium LT2 # 1 250 15 264 264 500 99.0 1e-142 MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFK AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETSM VCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRR FAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENSDALA VLAGHTRNVA >gi|283548478|gb|GG730299.1| GENE 969 1054199 - 1054714 483 171 aa, chain - ## HITS:1 COG:ogt KEGG:ns NR:ns ## COG: ogt COG0350 # Protein_GI_number: 16129296 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Escherichia coli K12 # 1 171 1 171 171 321 88.0 4e-88 MLNLLEDTIATPLGPLWVICDEQFRLRAVEWDQHSDRMAQLLDIHYRAEGYQRIAAKNPG GLSDKLAEYFAGNLSIIDTLETATAGTPFQREVWQALRTIPCGQVMHYGQLAEQLGRPGA ARAVGVANGSNPVSIVVPCHRVIGRNGTMTGYAGGVQRKEWLLRHEGYLLL >gi|283548478|gb|GG730299.1| GENE 970 1054928 - 1055491 514 187 aa, chain + ## HITS:1 COG:ECs1924 KEGG:ns NR:ns ## COG: ECs1924 COG2840 # Protein_GI_number: 15831178 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 187 1 187 187 336 86.0 2e-92 MNLDDASLFLDAMGDVQPLKGRADVHWQPTRNLRAPARIDTLQLDNFLSTGFLDIVPLSV PLEFRREGLQHGVTDKLRTGKYPQQASLNLVRQPVETCRQMLFSFILQAQQDGLRNVLVI HGKGRDDNSHANIVRSYVARWLTEFEDVQAYCAALPHHGGNGACYVALRKTAQAKQENWE RHAKRSR >gi|283548478|gb|GG730299.1| GENE 971 1055504 - 1056736 865 410 aa, chain - ## HITS:1 COG:ydaM_3 KEGG:ns NR:ns ## COG: ydaM_3 COG2199 # Protein_GI_number: 16129302 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 241 410 1 170 170 273 77.0 3e-73 MSIAALHSLDLLTLPVWIVSPHTEELVFANTVARELMQDPCFSSLRKGLFSTHAQNDLTM YLRDLRNHCNIVEILTVYRKGEETAMASRLSIRSLPDMGDIIIFESIETPTAQGLKASRS ANYQRNKQGFYARFFQTNSAPMLLIDPSRDGLIVDANLSALNFYGYSLDVMCQKHTWEIN MLGRHILPVMHEIAHLPGGHKPLHFVHKLADGSSRHVQTYAGPIEIYGNKLMLCIIHDIT EQKRLEQELEQAALRDALTGLLNRRHFYQVTEPQQTNAMSLTQDYSLLLIDTDRFKSIND LFGHLKGDDVLCALARTLESCVRKDDLIFRWGGEEFVVLLPRTSLDAALNLAEVIRAAVA KVTLPGLPRFTVSIGVARHETNESIDELFKRVDDALYKAKNEGRNRVLAA >gi|283548478|gb|GG730299.1| GENE 972 1056803 - 1058917 1255 704 aa, chain - ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 255 674 337 752 776 266 36.0 8e-71 MLHVSWDPVLIGISFVVAFIASFIALDSAGKVAISGRRESAFWRLSGGATLGMGIWSMHF IGMLAMKMSMPINYHFSLTAFSFFIALISATLAINIAISGNTLSTKRLVVATGILSAGVV TMHYVGMFAIIEHVAIAWDRSLVMLSVMIAVVASGVGLWLAFHLRQNTRRALINRLLAAL VMALAIASMHYTGMGAATFTHFGHTAHDGLSTQELSVWVCAVTLIILGIMLVVSMVDSQL RTSRLADSLHQLNCQLEHQVHYDALTGLANRTQIDACLRDCLRQSKLHQHQFALVFIDLD RFKVVNDTWGHHIGDQLLIASTQRIYSCLDSSMTLARLGGDEFILLVPHCNQESVSTLLT EIAATIGEPFTLYGHTIRVSLSAGSSIYPDHGSTLHELKVKADMAMYHVKQAGRNGWAIY NPEMEAIADTPPTFLQELAQALEHGQFELWYQPKYTAGDRSLTGFEALLRWHHPERGILL PAEFLPALEDTGLIIPVGKWVIQQACLQLYQWKSQGYTEWTLAVNLSPAQFEQHDIIDIV CNALAQYQLSPACLTLELTESTALKNLKRSVEVLNAFSALGITVSIDDFGTGYSNILMLK SLPARELKIDRLFIKDISDNSKNTKIVATIIDIAHSMNMRVVAEGIETEAQEILLTQMGC GVLQGFLYAKPLPAHKIHELIQTESDAIQKPVGQHLSHQQSITL >gi|283548478|gb|GG730299.1| GENE 973 1059331 - 1060440 662 369 aa, chain + ## HITS:1 COG:STM1657 KEGG:ns NR:ns ## COG: STM1657 COG0840 # Protein_GI_number: 16765001 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 358 1 358 384 431 70.0 1e-120 MLNDISVRTFIVLFLVITAVALNVVEIIFSAGADIIVATNTVSLLSLLCLWWYMTKYLVM PINTVKRSIEEVTSGNLAISIPEFGNNCAGRLIPGINSLSSNISTLVNEIRISSQTAMTL SEQLAERSAELSVKTEQQSGALMQTAANMDEIAVNTRNNADNTQIASARATMATQCARQG GELMVQVATNMRSITECAEQMTEIITLIDGIAFQTNILALNAAVEAARAGEHGKGFSVVA GEVRMLAHRSADAAKNIKQLIAQTHQNVQQGAAIVREAEKNMQDIVGGAGQLNQLMGEIL TTTQEQEKGIIRITHALAELENVTQSNAIMVDELSDSSGILKNQVIDLQSRTHQFRLSNT PEPAIRQRA >gi|283548478|gb|GG730299.1| GENE 974 1060583 - 1061536 911 317 aa, chain + ## HITS:1 COG:STM1656 KEGG:ns NR:ns ## COG: STM1656 COG0598 # Protein_GI_number: 16765000 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Salmonella typhimurium LT2 # 1 317 11 327 327 614 94.0 1e-176 MPDAVFAWQLDGRGGVKPLEDNDVIDSQHPCWLHLNYTHSESAQWLASTPLLPNTVRDAL AGESTRPRVSKVGDGTLITLRCINGSTDERPDQLVAMRLYMDERLIVSTRQRKVLALDDV VSDLQEGTGPVDCGSWLVDICDALTDHASEFIEQLHDKIIDLEDDLLDQQIPPRGFLALL RKQLIVMRRYMAPQRDVYARLASERLAWMTDDHRRRMQDIADRLGRGLDEIDACIARTGI MADEIAQVMQESLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGGGWQFGFSLFCILL VVLIGGVTLWLHRSKWL >gi|283548478|gb|GG730299.1| GENE 975 1062022 - 1063395 1248 457 aa, chain + ## HITS:1 COG:ECs1927 KEGG:ns NR:ns ## COG: ECs1927 COG0513 # Protein_GI_number: 15831181 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli O157:H7 # 1 457 1 457 457 830 91.0 0 MTAFSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLG LLQHIDAALFQMQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQ HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQT LLFSATWPEAIAAISGRVQQDPLTIEIDTVDALPAIEQQFFETSSHGKIPLLQKLLSQYQ PASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV AARGLDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRANILSEML QLKLNWLPAPGNGSILPLEAEMVTLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV HPAHVYVAVRQNVAHKAWKQLQNGKIKGKTCRVRLLK >gi|283548478|gb|GG730299.1| GENE 976 1063477 - 1064412 1128 311 aa, chain - ## HITS:1 COG:ECs1928 KEGG:ns NR:ns ## COG: ECs1928 COG0037 # Protein_GI_number: 15831182 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Escherichia coli O157:H7 # 1 311 1 311 311 617 94.0 1e-177 MQDNQQVTKKEQYNLNKLQKRLRRNVGEAIADFNMIEDGDRIMVCLSGGKDSYTMLEILR NLQQSAPISFSLVAVNLDQKQPGFPEHILPEYLQQLGVEYKIVEENTYGIVKDKIPEGKT TCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDG KHIVIRPLAYCREKDIERFSEAKGFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIE TMFSAMQNVVPSHLSDINLFDFKGIKHGSEVVNGGDLAFDREEIPLQPAGWQPEEDDAQL DELRLNVVEVK >gi|283548478|gb|GG730299.1| GENE 977 1064461 - 1064781 200 106 aa, chain - ## HITS:1 COG:ECs1929 KEGG:ns NR:ns ## COG: ECs1929 COG0582 # Protein_GI_number: 15831183 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Escherichia coli O157:H7 # 10 105 316 411 411 152 70.0 2e-37 MMMSIPRPFFISFAFLLHNAQKPYYSVSSSSARYHASVKRAGIRRRNPYHTRHTFACWLL SAGANPSFIANQMGHENAQMVYEIYSAWIEELNGEQVKMLNAKLAL >gi|283548478|gb|GG730299.1| GENE 978 1065069 - 1065503 472 144 aa, chain - ## HITS:1 COG:ECs1997 KEGG:ns NR:ns ## COG: ECs1997 COG0589 # Protein_GI_number: 15831251 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 144 25 168 168 245 92.0 1e-65 MNRTILVPIDISDSELTQRVIAHVEAEAKIDDAQVHFLTVIPSLPYYASLGLAYSAELPA MDDLKAEAKSQLEEIIKKFNIPTDRVHVHVAEGAPKDKILEMAKKLPADMVIIASHRPDI TTYLLGSNAAAVVRHAECSVLVVR >gi|283548478|gb|GG730299.1| GENE 979 1065585 - 1065797 226 70 aa, chain - ## HITS:1 COG:no KEGG:CKO_01421 NR:ns ## KEGG: CKO_01421 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 68 1 68 72 112 85.0 6e-24 MNHHPVKSSRIASVGYDESSRTLEIRFHQLATLQYQHVPARIFRDFLSVVSKGRFYDGVI KGKFPEIKIK >gi|283548478|gb|GG730299.1| GENE 980 1065943 - 1067070 1316 375 aa, chain - ## HITS:1 COG:STM1473 KEGG:ns NR:ns ## COG: STM1473 COG3203 # Protein_GI_number: 16764819 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Salmonella typhimurium LT2 # 1 375 1 377 377 533 85.0 1e-151 MNRKVLALVIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYFSDDANSDGDQTYMRMG FKGETQVNDMITGYGQWEYQVQANGTEGDKGDSWTRLAFAGIKVGDYGSFDYGRNYGVLY DVEAWTDMLPEFGGDSYTKADNFMTGRANGVATYRNTDFFGLVDGLNIALQYQGANEDQN GQEGTNNSGDRNVKNSNGDGFGISSTYDLGMGVSFGAAYTSSDRTNEQVNHSTAGGDKAD AWTAGVKYDANNIYLATMYSETRNMTPYGGSDGYSDTIANKTQNFEVTAQYQFDFGLRPE VSFLMSKGKDLATVNGNDDKDLVKYASVGATYFFNKNFSTYVDYKINLLDEDDSFYTRND ISTDDVVALGMVYQF >gi|283548478|gb|GG730299.1| GENE 981 1067440 - 1070964 3594 1174 aa, chain - ## HITS:1 COG:ydbK_2 KEGG:ns NR:ns ## COG: ydbK_2 COG1014 # Protein_GI_number: 16129339 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Escherichia coli K12 # 409 800 1 392 392 794 96.0 0 MQTIDGNGAVASIAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE GGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGQLTPFVLHVAARTIATHALSIF GDHSDVMTVRQTGCAMLCASSVQEAQDFALISQIATLKSRVPFIHFFDGFRTSHEINKIV PLADDTILGLMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTSEEVVEELMARGEKVGVLKVRL FRPFSARHLLRALPETARSIAVLDRTKEPGAQAEPLYLDVMTALAEAFNCGERETLPRVI GGRYGLSSKEFGPDCVMAVFNELNSAKPKPRFTVGIYDDVTNLSLPLPENTLPGTARLEA LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEHPIRSAYL ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSVDEVWSRLPQEVQAVLNQKKARF YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER NWQALALARESVAEVALQPVDPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVSPEAMESAPAS LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE KVNYDFFLNLPEIDRTKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML IANATGCSSIYGGNLPSTPYTTDVNGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVMRL LEQFADKIPAELNDALHAEATPELRREQVTALRQHLKDVEGAQQLLTDADALVEKSIWLI GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAESYPGPSLIIAYSPCEEHGYDLAL SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSDALAETLLNEQRFRRLNAQQP EVAEQLWKDATADLQKRYDFLAQLAGKAEKNGTE >gi|283548478|gb|GG730299.1| GENE 982 1071240 - 1071506 195 88 aa, chain + ## HITS:1 COG:STM1649 KEGG:ns NR:ns ## COG: STM1649 COG3042 # Protein_GI_number: 16764993 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Salmonella typhimurium LT2 # 38 88 1 51 51 63 94.0 1e-10 MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGMKAAMSSTGEANCAMIGGSLSVARQLD GSAIGMCALPNGKRCSEQSLAAGSCGSY >gi|283548478|gb|GG730299.1| GENE 983 1071520 - 1071939 384 139 aa, chain - ## HITS:1 COG:STM1648 KEGG:ns NR:ns ## COG: STM1648 COG3187 # Protein_GI_number: 16764992 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Heat shock protein # Organism: Salmonella typhimurium LT2 # 1 138 1 134 136 202 79.0 1e-52 MKNVVTLIALSMLMAGCVSSGKVSVSREQLQHHRFVLQSVNGKAVTVANNPPELSFGENM TVSGKMCNQFHGQGKLSDGELKVKDMAMTRMMCADPQLNALDGIVSEMFKQGAQVDLTAD QLTLATAEQTLTYKLADLM >gi|283548478|gb|GG730299.1| GENE 984 1072052 - 1073041 1295 329 aa, chain - ## HITS:1 COG:STM1647 KEGG:ns NR:ns ## COG: STM1647 COG1052 # Protein_GI_number: 16764991 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 329 1 329 329 638 94.0 0 MKLAIYSTKQYDKKYLQQVNDAFGFELEFFDFLLTEKTAKTAHGCEAVCIFVNDDGSRPV LEELKKQGVKYIALRCAGFNNVDLDAAKELGLQVVRVPAYSPEAVAEHAIGMMMTLNRRI HRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGIAALRILKGFGMRLLAFDPYPSAA ALELGVEYVDLKTLFAESDVISLHCPLTPENYHLLNQEAFEQMKNGVMVINTSRGALIDS QAAIDALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLT AEALTSISETTLQNLAQIDKGETCPNALF >gi|283548478|gb|GG730299.1| GENE 985 1073300 - 1073512 96 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTHSEAKRWATLMLKAALCDGMKPDEISRQVHLVCDHHGRECLEELIEEILIEAGRIGP KHSEGQLRHH >gi|283548478|gb|GG730299.1| GENE 986 1073678 - 1076317 2272 879 aa, chain + ## HITS:1 COG:no KEGG:CKO_01435 NR:ns ## KEGG: CKO_01435 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 879 1 879 879 1521 86.0 0 MKGKYKAVLALLLLFILVPLTLVMTLGLWVPTLVGVWLPVGTRIALDESPRLTRHGLHIP ELRYLVDDCPLARIAQADLSHPSRWLLNVRTVELDSACLAKLPQTEPSPVAPKTLAEWQS MLPNAWINIDNVILSPWQEWQGKLSLSLTPAIQQLRYQGEKVKFQGRLHGQNLTINELNV AAFADQPPVKLVGEFTMPLVPDGLPVSGHAVATLRLPQEPTLVDAELEWQENSGQLIVMA RDNADPLLDLPWEITRQQLTISDGRWNWPYQGFPLSGRLGMKVENWQAGLENAVVSGRLN VLTQGDAGKGNAVLTLGPGKLGIDNSEMPLQLIGEAKQGDLIFYAKLPARLTGSLNDPQL AFEPGALLRSRGRVIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILRAHENQMGGFELHLD GLANDFLPDAGRWQWRYWGEGSFTPMHARWDVAGKGEWHDNTLKLFDLSTGFDHLQYGTM TVENPRLVMDEPIVWVRDATQPTFSGALSLDAGNTVFTGGSVLPPSTLKFSVEGSDPTVF QFKGQLHAGAIGPVQLNGRWDGIRLRGQAWWPKQSLTVFQPLVPPDWKMKLREGELYAQV AFSAAPEQGFEAGGHGVLKGGSAWMPDNQINGVDFILPFRFSEGAWQLGTRGPVSLRIAE VVNQVTVKNMTADLQGAYPWREDNPLLLSDVSAELLGGKVIMQQLRMPQHDPALLRVQNI SSSELISAVNPKQFAMSGPVSGALPLWLDNEKWIIKDGWLTNPGPMTLRIDKDTADAVVK DNMAAGAAINWLRYMEITHSWTKINLDNLGVLTMQATVTGNSRVDGKVGTVNLNYTHEEN IFTLWRSLRFGDNLQAWLEQNAALPETHCWEGKECEEQQ >gi|283548478|gb|GG730299.1| GENE 987 1076314 - 1076505 226 63 aa, chain + ## HITS:1 COG:no KEGG:Entcl_2429 NR:ns ## KEGG: Entcl_2429 # Name: not_defined # Def: putative outer membrane lipoprotein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 63 1 63 63 101 82.0 8e-21 MKKITAMLGLLAAFLLAGCTPRIEVAAPKEPITINMNVKIEHEIHIKVDKDVESLLKSRS DLF >gi|283548478|gb|GG730299.1| GENE 988 1076513 - 1076836 392 107 aa, chain + ## HITS:1 COG:STM1644 KEGG:ns NR:ns ## COG: STM1644 COG3784 # Protein_GI_number: 16764988 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 107 1 107 107 149 73.0 1e-36 MKKQLTAILVALSFLTSNAWALTLNEARTQGRVGETLNGYLVALQTDAETQALVSEINKA RSASYQQLAESNNIPPEEVAKMAGQKLVARAKPGEYVQGINGKWLKK >gi|283548478|gb|GG730299.1| GENE 989 1076947 - 1077552 508 201 aa, chain + ## HITS:1 COG:ECs2010 KEGG:ns NR:ns ## COG: ECs2010 COG0558 # Protein_GI_number: 15831264 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli O157:H7 # 1 195 3 197 203 270 69.0 9e-73 MTLYQIKPAFQALLRPLMFWLHKKSVTANHITLAAMALSFVTGAVLVIFPRPEYFILLPG VLFVRMALNALDGMLARECNQQSRLGAILNESGDILSDLALYLPFMLLPGSNGLMVMVML FCAVMTEFCGVLAQTINGVRSYAGPLGKSDRALVFGAWGLALTFWPQLVQWSNVLWGVAT LLLIWTVINRCKSALREEGVK >gi|283548478|gb|GG730299.1| GENE 990 1077549 - 1078466 822 305 aa, chain + ## HITS:1 COG:YPO2816 KEGG:ns NR:ns ## COG: YPO2816 COG4589 # Protein_GI_number: 16123013 # Func_class: R General function prediction only # Function: Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase # Organism: Yersinia pestis # 8 303 12 307 309 371 67.0 1e-103 MMLLEKSLAVIFALLLVATVVNGLLVWRRPGKDWRELTLRIRTWWAIIVLFSLAILSPHW LALTFFALVSFMALKEFLTLAPSRQTDRMPLLWMFIAIPINYWLIGINWYGMFVVFIPVY AFLFLPVRMVIAGDTQGFLRYASQHHWSLMTTVFAFSHVAFLLVLPDDGKQTGALMVLFL VGLTEFNDIAQYLWGKSIGRIKVIPKVSPNKTLAGLVGGVATTTLLAALLGPLMTPLSIP LSLLAGFIIGISGFCGDVVMSAIKRDIGVKDSGTLLPGHGGILDRLDSLIFTAPVFFHFI RYFCY >gi|283548478|gb|GG730299.1| GENE 991 1078470 - 1079111 516 213 aa, chain + ## HITS:1 COG:YPO2815 KEGG:ns NR:ns ## COG: YPO2815 COG0204 # Protein_GI_number: 16123012 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Yersinia pestis # 2 204 1 203 210 242 54.0 3e-64 MLSSILRTLFTLCIVWPVIWLWLGLRIRHRERLPACGPAIIVANHNSHMDVFALLSLFPL RRQASVHPVAAADYFLRNKAMAWFALNILNIIPVSRKGRETNPLAQCEQALRDGKILILF PEGTRGEPGKLAPLKSGLWHLSQRVPDVPIIPVWLRGTEHIMAKGNRIPLPLFIDVNIGS ALSFHGDKHLFLDELRQQLLQLQQQTSGEQTHE >gi|283548478|gb|GG730299.1| GENE 992 1079104 - 1080864 1612 586 aa, chain + ## HITS:1 COG:ECs2012_1 KEGG:ns NR:ns ## COG: ECs2012_1 COG2267 # Protein_GI_number: 15831266 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Escherichia coli O157:H7 # 1 281 1 280 280 462 79.0 1e-130 MSNVRVPDERRFLTSDNIELFYRHWPATAPGAAPKAIVMFHRGHEHSGRLQHIVDELAMP DTAFYAWDARGHGHSPGQRGYSPSLARSVQDVEEFVRFAAADSQAAMEDVVVVAQSVGAV LAATWVHDYAPTIRGLVLASPAFKVKLYVPFARAGLTLMHRLRGLFFVNSYVKGKYLTHD AGRVESFNQDKHITRAIAVNILLDLYKTAERIVSDAAAITLPVQLLVSGDDFVVHRQPQI DFYQRLRNPLKELHVLPGFYHDTLGEKDRHLAFAKMRDFITTLYAMPPQRFDYSNEDRWS PGADTWRMLNGGPAPYSLDDIAYRGLRYGMKLLGTQSTGVRLGFETGFDSGSTLDYVYRN QPQGNGALGRLIDKNYLNNVGWQGIRQRKVHLQMLIRQAVAQLDEQGTPVHVVDIAAGHG RYVLDALEGEKAVRSILLRDYSELNVNKGREMIASRGMAEIARFEQGDAFNREQLAALEP RPALGIVSGLYELFPDNSLVKNSLAGLAEAIAPGGILIYTGQPWHPQLKTIAWSLTSHKD GKAWVMRVRTQGEMDALVREAGFEKCAQLIDEWGIFTVSMAVRRAS >gi|283548478|gb|GG730299.1| GENE 993 1080878 - 1082158 1001 426 aa, chain + ## HITS:1 COG:ynbD_1 KEGG:ns NR:ns ## COG: ynbD_1 COG0671 # Protein_GI_number: 16129372 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Escherichia coli K12 # 1 335 1 342 342 424 66.0 1e-118 MVQAVGWLLLLAPFFFLTYGKVNQFTAWQDAQYQNVGSIVFSWESAIPFIPWTIIPYWSL DLLYGLSLFVCTTRFEQRRLVLKLVLASIIACAGFLLFPLQFSFTRPEVTGTAGWLFAQL EQFDLPYNQSPSLHIILCWLLWRHFSRYLSGGWRWLCDGWFLLIAISVLTTWQHHFIDII TGLTAGMVIDWMVPESRRWRWCQPDAARLRLMRRYLLGATLCFAVAVLLTPWLLWPALAL LMIGCGYAGFGAAVTAKDPQGRLSPAAYWLLLPWRAGMWLSMRGFTRRLPALSPVLAGVY LGSFPRREPAQNAVLDVTFEFPRGRATASRVYRCVPMLDLAIPSESELQLAVNTLETLHG TQGTVLVHCALGLSRSAMVVAAWLLRYGHATTVEHAVAQIRASRPQVVLTDKHLEMLQQW QQKVTT >gi|283548478|gb|GG730299.1| GENE 994 1082242 - 1082535 242 97 aa, chain + ## HITS:1 COG:no KEGG:ROD_16301 NR:ns ## KEGG: ROD_16301 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 96 37 132 135 109 61.0 3e-23 MAWVLFVAQPGILRAVIALLCAVVWFGCWRLWLDERYFSLVTAENDTQAGEALCFIWRRE RLKTLTLVDRQAGALKQCRHTLCLVAALWAVWLVLLV >gi|283548478|gb|GG730299.1| GENE 995 1082634 - 1082825 90 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833015|ref|ZP_06352756.1| ## NR: gi|283833015|ref|ZP_06352756.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 63 1 63 63 101 100.0 1e-20 MWLLKWYVWNRWVFKLLSRDVAEPEQFLLHCWEENLAKCREYAAIWRDINRIHGKQVRVR AKK >gi|283548478|gb|GG730299.1| GENE 996 1082869 - 1083474 955 201 aa, chain - ## HITS:1 COG:acpD KEGG:ns NR:ns ## COG: acpD COG1182 # Protein_GI_number: 16129373 # Func_class: I Lipid transport and metabolism # Function: Acyl carrier protein phosphodiesterase # Organism: Escherichia coli K12 # 1 201 1 201 201 360 91.0 1e-100 MSKVLVLKSSILAGYSQSGQLSDYFVEQWREKHSADEITVRDLAANPVPVLDGELVGALR PSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGVTFR YTEKGPEGLVTGKRAVVLTSRGGIHKDTPTDLITPYLNVFLGFIGITDVNVVFAEGIAYG PEVASKAQSDAKAAIDSVVAA >gi|283548478|gb|GG730299.1| GENE 997 1083707 - 1087579 4474 1290 aa, chain + ## HITS:1 COG:STM1641 KEGG:ns NR:ns ## COG: STM1641 COG1643 # Protein_GI_number: 16764985 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Salmonella typhimurium LT2 # 1 1290 11 1300 1300 2483 95.0 0 MLQQQLDSLMLRDRQRFARRLHGVKKVKNPDAQQAIYQEMAKEIERAAGKVVLRTAARPV ISYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMDLGRGVKGLIGHTQP RRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQ YDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKHFNNAPIIEVS GRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGEREIRDTADAL NKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTAR ISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILR TNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQQTAYKLTPLG RQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHD KESDFLAFVNLWNYLGEQQKALSSNQFRRQCKVDFLNYLRVREWQDIYTQLRQVVKELGI PVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGLFKKPPKWTMV AELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIV AARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELEHKSRRRDILV DDETLFEFYDQRISHDVVSARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPN FWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSL PKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPDHLK ITFRVVDDKNKKLQEGRSLQDLKDALKGKVQETLSSVADDGIEQSGLHIWSFGQLPESYE QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLP NKAKLGLYFNPYGKVLDLIDDCISCGVDRLIDAHGGPVWTEEGFAALHEKVRAELNDTVV DIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMNGLVYRGFVTGNGFKRLGDTL RYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDDVKAIRWMIEE LRVSYFAQQLGTPYPISDKRILQAMEQISG >gi|283548478|gb|GG730299.1| GENE 998 1088108 - 1088641 545 177 aa, chain + ## HITS:1 COG:ECs0607 KEGG:ns NR:ns ## COG: ECs0607 COG3501 # Protein_GI_number: 15829861 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 173 1 173 633 269 80.0 2e-72 MPTGLRFTLEVDGLPPDALVVESFHLSQSFSTLFSLDISLVSQQLLSIDFSQVLENTAHL KIWQGTEIQRRVNGIVTWFEQGENDGHQMLYSMKVRPPLWRAGLRQNSRIFQNEDIKSIL GTILQENDVTDWSPLFSEAHPAREFCVQYGETDYDFLARMAAEEGLFFYEEHSPDTS >gi|283548478|gb|GG730299.1| GENE 999 1088751 - 1089629 446 292 aa, chain + ## HITS:1 COG:ECs0236 KEGG:ns NR:ns ## COG: ECs0236 COG3501 # Protein_GI_number: 15829490 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 3 200 361 558 713 299 71.0 3e-81 MEKPSVDGPQSATVTGPEGEEIFCDEHGRVRVKFNWDRYNPANQDSSCWIRVVQAWAGPG FGNLAIPRVGQEVIVDFLNGDPDQPIIMGRTYHADNPPPGGLPGTKTQMTIRSKTYKGSG YNELMFEDKTGQELLSMHAQKDMSTVVLNNRVTAVGANHVESVTGNQAINVQEGQVVVVH ADHKQQVKNMHDTLVGGNKVELVAGPCLINSATSLTLACGDAVITLTADGNISWYCNNFN IYAKKMGAITAADTVDINMDDATPGAIGAHFAPADIKGAVDAAFPPVKDTNK >gi|283548478|gb|GG730299.1| GENE 1000 1089650 - 1090081 331 143 aa, chain + ## HITS:1 COG:no KEGG:EFER_1979 NR:ns ## KEGG: EFER_1979 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 138 1 138 139 218 79.0 8e-56 MNYITHEGALTLPGCDDVVDETVNILKLPQRQASLVISRVRLAEGQSHEGYLSRQMAMLK KDSRHFLSSEPWPAMLGDIPALELTCSFEKQNVTIYQQLLCTQQTPHLMVITFTRLAPLD EAAAQWWLQVKASFIAHRDITQA >gi|283548478|gb|GG730299.1| GENE 1001 1090097 - 1094683 2309 1528 aa, chain + ## HITS:1 COG:STM0291 KEGG:ns NR:ns ## COG: STM0291 COG3209 # Protein_GI_number: 16763674 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Salmonella typhimurium LT2 # 224 1416 111 1253 1364 403 31.0 1e-111 MGSDFLAAKLHDPLVHTSLLADFVSSFVKGAIYVAVAVGAAAAATAAVAATIGSGGTAGP VVAFLISNIIIGGVGAGFGSLIDDIADGAGALVDDALDFFGMKGKPDGLIATGSPNVRIK KQPAARAAGKLPPAGELAKLEAEDAKKQEEDESAWDIAANIFFTLLPVAGLAKMAWDFLA DPAGSIQEMVAPTVAGANPHATPADEDKITCKKLHLIPPNELFLAEGSRTVRINSQPACR NGDRSTCEAVISHVQSGMKVRIGGPSEVVKNIRSGKNPFMGLAADVVVGLLTRKALGKSP KKRKTEGKEPHPHKERDPNAPCPIRGNPIHLPSGAKIQAGESELDFVLDGHIPLLWQRLY DSRNTQTGILGRGWRLPFETTIYRSASPDLTTPPRSDLTENSPDQFIYMDDAGRALKLGG LTSGDSAFYVDERFHVWRSKQDYFLIQTLAGEYSFFAPDPCRSGHWRLERIMDRHLNSLT LVYDATGVLTHIHDDDHLLVVRLQYENERLHKVWQSSEDGGHERLLVSYAFSPEGQLGHV IDANGDVTLRCEYGDIHGLIQALYYPAGRESHYRWQTFDAWTDEAGDVRPAHWRVIEHWI QESAHNDTPPVMLEHYGFDYDVPGQSLRLVQADRGESVWRWDALGQVTSERDESGAEWTY HWNSARQLLKSTDPLGNSQTFTYDEYGNIAVFTNALGEKTAITWLPGFSFPLRWIQPGQV VWSYEYNNIGDVISMTDPEGHITRLEWDTDGNNTVVHDAKGNALRYRYNRRGQVTEYRDC SDRVTRWCYDEWGRVTQHINAESHATHYGYTATDRLHTLTRPDGEFMQFDYDAAGELVRH QDYGRVLTLFTRNARGQVTQRTDPGGYTLRYEYDPLGRLKRLFNEKGEAYRFEYDAQDNL IQETGLTGIQKTYQRDALGQLLTQTETPTDGSTPLLTHFEYDALGRQTARMTPSRRTEYH YALHQTTVLDTTAEGTTTLRFDYDRLGRLLAEHNHGGDYRYEYDALGNRIAEHLPGEQTL RHLYYGSGHLLQTHLDSDCGREVIAEYERDVLLREIRRTQGTLNQYRAYNICGHLTRQSC GRNRPELATPLLDIRYHRNARDNLLRVSGRYHPGLPERDRDTGALQEDAFRYDERGQIVH HEQDGHGRTFSYDAAMNGLGDSGYRQPPGLPDAPGNVLTACKEYRYRWDGFGRLAQRDNV STGVKQRLHYDDRHRLIKVELLNDREWSKVEFRYDALDRRTEKRVWRHNTTLPVRTFFEW SGMRLCGERNDKVPLAHTLYLYEEGSWQPLARVDSYRGGSAPQQRVLYYHSLPNGFAPCL TNSEGEIVWRGRMQLWGTLRTEENRESYSMHPAHNLRFAGQYLDRETGLHYNTFRYYAPE SGRFTQLDPIGLNGGINLYAYVKNPLTWIDPLGLAGCNAQQRRNISDLRNGKDVTVRSVD EARALLDNMPDLRPHIDNFPARSGELYSGTKFSDVWKQPAGTYRGDLYNVKNPLSDVVHN SKNPLHDNNPHYNIIFGDGTKAGIIIVP >gi|283548478|gb|GG730299.1| GENE 1002 1094718 - 1095065 155 115 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833022|ref|ZP_06352763.1| ## NR: gi|283833022|ref|ZP_06352763.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 115 9 123 123 206 100.0 4e-52 MLKSIPLVERTIESSGNELFIIYNIIDDLDFDITLKKTYHSYEQLENSVLVFLSDEKKHS EDILIWSDDFSVKQKKAKKELFLRFDTGRLFLPDNGEGFIFDGDVNYMRTWIDKL >gi|283548478|gb|GG730299.1| GENE 1003 1095150 - 1095359 298 69 aa, chain - ## HITS:1 COG:no KEGG:SEN0274 NR:ns ## KEGG: SEN0274 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Enteritidis # Pathway: not_defined # 1 69 17 85 85 119 88.0 3e-26 MTTYYSQHPSLHLKGDWLAEAGFETGRGVTVKISEGCIVLMAESNEVQELREQLYQAKQV VKGVKDVLV >gi|283548478|gb|GG730299.1| GENE 1004 1095851 - 1096030 61 59 aa, chain + ## HITS:1 COG:no KEGG:PSEEN5274 NR:ns ## KEGG: PSEEN5274 # Name: not_defined # Def: hypothetical protein # Organism: P.entomophila # Pathway: not_defined # 1 59 1496 1554 1554 105 79.0 7e-22 MDQFKRNDGKVRYRKDYPIDSKTGRVYGHDDPKGNGHGSLPHINIKRADGTLVRIDITG >gi|283548478|gb|GG730299.1| GENE 1005 1096033 - 1096320 83 95 aa, chain + ## HITS:1 COG:no KEGG:PSEEN4585 NR:ns ## KEGG: PSEEN4585 # Name: not_defined # Def: hypothetical protein # Organism: P.entomophila # Pathway: not_defined # 7 95 12 100 100 89 53.0 5e-17 MNKLIESIERGKVRGIEEYKLIDGERYCYQYALKKIANKYVTYLFFIPESKMDVMEDYGS EEIKEFFSITDAINYFTSIGVDVSLFRAIKVVLPF >gi|283548478|gb|GG730299.1| GENE 1006 1096389 - 1096562 224 57 aa, chain - ## HITS:1 COG:no KEGG:SC0286 NR:ns ## KEGG: SC0286 # Name: yjiW # Def: hypothetical protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 57 17 85 85 82 65.0 5e-15 MTTYYSQHPSLHLKGYWLKEAGFKTGRGVTVKISDRWLREQLYQAKQMVKRMRDVIV >gi|283548478|gb|GG730299.1| GENE 1007 1097061 - 1097273 78 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTPGVHSSQNTALYHNDLVRALKDERVSKSNTICIDANSTPACTGFSHCEFYSRVEGHSV RLYGNGISIW >gi|283548478|gb|GG730299.1| GENE 1008 1097278 - 1098069 699 263 aa, chain + ## HITS:1 COG:ydcF KEGG:ns NR:ns ## COG: ydcF COG1434 # Protein_GI_number: 16129375 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 263 3 265 266 406 72.0 1e-113 MSQFPTLSATTLAAINTVGQWLAQSDFTGDITVQSDCVILAGNAVIPTLDAACRIAKDQQ VPLLISGGIGHSTRFLYDAIARHPRYNIIRTTGRAEAAILADIAHQFWQIPGEKIWVEDQ STNCGENARFSCALLNQATESIHTVIVVQDPTMQRRTMATFQRVTRDEPHAPRWLSFPGF IPELAQRQDGVDFVPAAEGLWSVDRYLSLITGELPRLRDDVSGYGPCGRDFIVHVDIPGN VEAAWQHLKSDTALSELLESRSL >gi|283548478|gb|GG730299.1| GENE 1009 1098271 - 1099710 1555 479 aa, chain + ## HITS:1 COG:ECs2021 KEGG:ns NR:ns ## COG: ECs2021 COG1012 # Protein_GI_number: 15831275 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli O157:H7 # 1 479 1 479 479 903 94.0 0 MSAPVQHPMYIDGQFVTWHDDAWIDVVNPATEEVISRIPDGRAEDARKAIDAAERAQPQW EALPAIERANWLRKISAGIRQRAGEISALIVAEGGKIQQLAEVEVAFTADYIDYMAEWAR RYEGEILQSDRPGENILLFKRALGATTGILPWNFPFFLIARKLAPALLTGNTIVIKPSEF TPNNAIAFAKIVDDIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVGAGEKIMAA AAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINTGQVCNCAERVYVQKGIYDQ FVNRLGEAMKAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVQEGARVVLGGKAVEG KGYYYPPTLLLDVRQEMAIMHEETFGPVLPVVAFTTLEEALAMANDSDYGLTSSIYTQNL NTAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIGGADGKHGLNEYLQTQVVYLQS >gi|283548478|gb|GG730299.1| GENE 1010 1099811 - 1100812 1329 333 aa, chain - ## HITS:1 COG:ECs2022 KEGG:ns NR:ns ## COG: ECs2022 COG0057 # Protein_GI_number: 15831276 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 333 1 333 333 601 91.0 1e-172 MSKIGINGFGRIGRLVLRRLLEVKSSVEVVAINDLTSPKILAYLLKHDSNYGPFPWSVDF TEDALIVDGKKIAVYAEKEAKNIPWKTTGAEIIIECTGFYTSTEKSQAHLDAGAKKVLIS APAGDMKTIVFNVNDDTLDASDQIISVASCTTNCLAPMAKALHDNFGIQLGTMTTIHAYT GTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPALSGKLKGHAQRVPVKTGSV TELVSVLSKKVTAEEVNNALKKATLNNESFGYTDEEIVSSDVIGSHFGSVFDATQTEITE VGDLQLVKTVAWYDNEYGFVTQLIRTLDKFIKL >gi|283548478|gb|GG730299.1| GENE 1011 1101002 - 1101532 631 176 aa, chain + ## HITS:1 COG:STM1639 KEGG:ns NR:ns ## COG: STM1639 COG3038 # Protein_GI_number: 16764983 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Salmonella typhimurium LT2 # 1 175 1 175 176 291 90.0 3e-79 MGNKYSGLQIGIHWLVFLLVIVAYSAMELRGFFPRSYRPAFNMVHVSCGITILTLMVARL LVRLKYPAPPIVPKPKPMMTGMAHLGHLVIYLLFIALPIIGLVMMYNRGNPWVAFGIVMP HAAEANAEMVGMLKTWHVTLANLGYFVIGLHAAAALMHHYFWKDNTLLRMMPRKRS >gi|283548478|gb|GG730299.1| GENE 1012 1101778 - 1102197 337 139 aa, chain + ## HITS:1 COG:STM1998 KEGG:ns NR:ns ## COG: STM1998 COG1974 # Protein_GI_number: 16765334 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Salmonella typhimurium LT2 # 1 137 1 137 139 199 72.0 1e-51 MLFFQPAKYRQTKHFPLFSDLVPCGFPSPAQDYIEKRIDLNDLLVQHPSATYFVKSSGDS MVGAGIGDGDLLIVDSARNPAHGDIVIAAIEGEFTVKRLQVHPVVMLKPENSAYAPIIIG SEDALDIFGVVTFIVKAAG >gi|283548478|gb|GG730299.1| GENE 1013 1102200 - 1103465 829 421 aa, chain + ## HITS:1 COG:umuC KEGG:ns NR:ns ## COG: umuC COG0389 # Protein_GI_number: 16129147 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1 421 1 422 422 700 80.0 0 MFALVDVNSFYASCEMAFRPDLKGKPVVVLSNNDGCVIACSAKARALGVTMGAPYFKQKD LFRRYGVVCFSSNYELYADMSSRVMSILEELSSHVERYSIDEAFCDLTGVRNCRDLTDFG LEIRATILQKTRLQVGVGIAQTKTLAKLANYAAKRWPQQTRGVVDLSNIDHQRKLMAALS VDKVWGVGRRISKKLDAMGIKTVRELADTDIRFIRKHFNVVLERTVRELRGESCLALEEF APVKQEIVCSRSFGEKLTDYNAMREAICTYASRAAEKLRGEHQFCRFISVFIKTSPFALT EPYYGNSASLKLLIPTQDTREIIRAATRSLDAIWREGQHYQKAGVMLGDFFSSGVAQLDL FDDSAPRRDSAELMRVVDRLNKKGRGTIWFAGQGIEQPWQMKREMLSPRYTTRFTDLLRV R >gi|283548478|gb|GG730299.1| GENE 1014 1104408 - 1104611 203 67 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A4454 NR:ns ## KEGG: SeSA_A4454 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 61 1 61 62 103 78.0 3e-21 MDEGYYWIRHCGVVQVAYYTNDKSEDLETGMIITGVWHLTRGDDICHNGEAEVLEGPLPQ PKNMLTS >gi|283548478|gb|GG730299.1| GENE 1015 1104977 - 1105192 153 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085337|ref|ZP_06352776.2| ## NR: gi|291085337|ref|ZP_06352776.2| putative oxidoreductase [Citrobacter youngae ATCC 29220] putative oxidoreductase [Citrobacter youngae ATCC 29220] # 1 71 1 71 71 113 100.0 6e-24 MGSIMSIYIYSLAAYVIGFIVMFALLVRGDKVCDLEFDLADTLFTSFLWPFYVVAILLIE VYEFFQRPKSR >gi|283548478|gb|GG730299.1| GENE 1016 1105720 - 1105995 227 91 aa, chain + ## HITS:1 COG:STM1628 KEGG:ns NR:ns ## COG: STM1628 COG1937 # Protein_GI_number: 16764972 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 91 1 91 91 154 97.0 3e-38 MPHSPEDKKRILTRVRRIRGQVDALERALESGEPCLAILQQIAAVRGASNGLMGEMVEIH LKDELVSGETTPDQRAVRMAEIGHLLRAYLK >gi|283548478|gb|GG730299.1| GENE 1017 1106028 - 1107146 1407 372 aa, chain + ## HITS:1 COG:STM1627 KEGG:ns NR:ns ## COG: STM1627 COG1062 # Protein_GI_number: 16764971 # Func_class: C Energy production and conversion # Function: Zn-dependent alcohol dehydrogenases, class III # Organism: Salmonella typhimurium LT2 # 1 372 1 372 372 705 97.0 0 MKSRAAVAFGPGQPLKIVEIDVAPPKKGEVLVKITHTGVCHTDAFTLSGDDPEGVFPAVL GHEGGGIVVEVGEGVTSLKPGDHVIPLYTAECGECKFCKSGKTNLCQAVRATQGKGLMPD GTTRFSYNGEPIYHYMGTSTFSEYTVCAEISLAKVNPQAPLDKVCLLGCGVTTGIGAVHN TAKVKEGDTVAVFGLGGIGLAVIQGAVQAKAGRILAVDTNPEKFKLAGEMGATDFINPND YDKPIQDVIVELTDGGVDFSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEIKTRP FQLVTGRAWRGSAFGGVKGRTQLPGMVEEAMSGKIRLDPFITHRLPLEQINEAFDLMHQG KSIRTVIHFGDN >gi|283548478|gb|GG730299.1| GENE 1018 1107316 - 1109004 1408 562 aa, chain + ## HITS:1 COG:STM1626 KEGG:ns NR:ns ## COG: STM1626 COG0840 # Protein_GI_number: 16764970 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 538 1 538 541 741 84.0 0 MDNTTSMQAQHKLGFLHQIRLVPLFSSILGGILLLFALSSGLASYFLMQADRDQRDVTDE IQVRMGLSNSSNHLRTARINMIHAGAASRIAEMDDMKANIAEAEKRIKQSQDGFNAYMSR TVKTSADEALDTELSASFKAYTDGLQPMLKYAKNGMFEAIINHENEQARPLDSAYNKVLL KAIEIRTARANHLSEQAHQRTQLGMAFMLGAFALALVLTVMTFIVLRRTVIHPLLRAAQR IEQISAGDLTMPEEPTGRSEIGRLSRHLQAMQHSLAKTVGTVRQGAEEIYRGTSEISARN TDLSSRTEQQAAAIEETAASMEELTATVKQNADNAHHASKLAEDASGKASRGGQMVSGVV KTMGNISGSSQKISEITAVINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAS RSAQAAKEIEGLISESVRLIDQGSGEVVAAGNTMTDIVDAVKRVTDIMLEIAAASDEQSR GIVQVSQAISEMDKVTQQNASLVEEASAAAASLEEQAARLTEAVGTFRLNGASAIKRAPM STTPGHLSPQASMVSGDNWETF >gi|283548478|gb|GG730299.1| GENE 1019 1109044 - 1110057 869 337 aa, chain - ## HITS:1 COG:ECs2027 KEGG:ns NR:ns ## COG: ECs2027 COG0583 # Protein_GI_number: 15831281 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 4 337 21 354 354 547 83.0 1e-155 MINVNNILLSSYQKRTTSLVTDTALFLTSLMEKNVLFNQRIRLRHLHTFVAVAQQGTLGR AAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTLPGEQFLTHAVRVLDALNTAGQ ALNQREESQNDVVRIGALPTAALGILPAVIGPFHKQQMETTLQVATMNNPMILAGLKSGE IDLGIGRMADPELMVGLNYELLFLESLKLVVRPNHPLLQETITLSRVMEWPVVVSPKGTA PRQHAETLLQSQGCKMPPGCIETLSASLSRQLTVDYDYVWFVPSGAVREDLRQATLVSLP VPTHGAGEPIGILTRVDVQLPSAAQILIAAIRKTVPF >gi|283548478|gb|GG730299.1| GENE 1020 1110198 - 1111100 783 300 aa, chain + ## HITS:1 COG:VC1687 KEGG:ns NR:ns ## COG: VC1687 COG1227 # Protein_GI_number: 15641691 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Vibrio cholerae # 1 296 1 300 301 227 44.0 2e-59 MIHVIGHLNPDSDAICTAAMTARWLTLRGQQATAWRLGEPNRETQFIFEQAGLTLPERLT FELTDRDVWLVDFTEPVQGPESLAESNVVGIIDHHRLGGLVTRLPPEVWVKPVGSSATLL WQLMTEDERSQLSPAEAVLLLGAALSDTVTLRSPTTTTDDRLAVDALAQKAGVDLDAFCR DLLSAKTSVEGMSARELLHKDIKTFTIHGHQVCVAQLELYALQQVETVLDDLRQEMARYA QEKSAALVVLMLTDINLGDTSLWFAGSALSDIPQPCKVEGMLSRKKQMLPWLESHLKPRQ >gi|283548478|gb|GG730299.1| GENE 1021 1111221 - 1112564 1147 447 aa, chain + ## HITS:1 COG:ECs2028 KEGG:ns NR:ns ## COG: ECs2028 COG5383 # Protein_GI_number: 15831282 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 803 89.0 0 MANTITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPTLHEKLANADEL ARLNVERHGAIRVGTAQELSTLRRMFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDDASLS RNPFRVFTSLLRLELIENVALRQKAAEILAKRDIFTPRCHELLDEFDAQGGFTPEQAQAF VHEALETFRWHQHATVDEATYHALHNEHRLIADVVCFPGCHINHLTPRTLDIDRVQSMMP ECGIEPKILIEGPPRREVPILLRQTSFKALEETVLFAGEMRGTHTARFGEIEQRGVALTP KGRALYDELLNKAGTGKDNLTHQLHLQEVFKAFPDSEFLLRQQGLAWFRYRLTPSGEAHR HAIRPDDDPQPLIERGWLVAQPIIYEDFLPVSAAGIFQSNLGNETQARSHGNASRDAFEQ ALGCAVYDEFVLYQEAEERSKRRCGLL >gi|283548478|gb|GG730299.1| GENE 1022 1112794 - 1114413 1878 539 aa, chain + ## HITS:1 COG:ECs2029 KEGG:ns NR:ns ## COG: ECs2029 COG3131 # Protein_GI_number: 15831283 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Escherichia coli O157:H7 # 1 538 13 550 551 1061 92.0 0 MAAVCGTSGIASLFSRAAFAAESDIADGKTVRFDFSVLQSMAHDLAQKPWGGAPRALPDT LAKLTPQAYNSIQYDAEQSLWNNVENRQLDAQFFHVGMGFRRRVRMFSVDDSTHMAREIH FRPELFKYNDAGVDTKQLEGQTDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQY GLSARGLAVDTYTDSKEEFPDFTAFWFETVKPGATSFTVYALLDSPSVTGAFKFVIHCEK TQVIMDVQNHIYARKDIKQLGIAPMTSMFSCGNNERRMCDTIHPQIHDSDRLAMWRGNGE WICRPLNNPQKLQFNAYTDNNPKGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNQWGK GTIGLMEIPTTGETLDNVVCFWQPEKSIKAGDELEFKYRLYWSAQPPVRSPLARVMATRT GMGGFPEGWAPGEHYPEKWARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYVE PIDGYRIQFDWYPTSDSTDPVDMRMFLRCQGDAISETWLYQYFPPAPDKRQYVDDREMR >gi|283548478|gb|GG730299.1| GENE 1023 1114580 - 1114804 198 74 aa, chain + ## HITS:1 COG:ydcH KEGG:ns NR:ns ## COG: ydcH COG2841 # Protein_GI_number: 16129385 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 20 73 1 54 55 67 70.0 5e-12 MFPEYRDLISRLKTENPRFLSLFEKHNSLDHEISRLEGSDGRGYSLDIVRLKKQKLHLKE DLLKILQKESVGES >gi|283548478|gb|GG730299.1| GENE 1024 1114896 - 1115441 718 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16129386|ref|NP_415944.1| ribosomal-protein-L7/L12-serine acetyltransferase [Escherichia coli str. K-12 substr. MG1655] # 1 177 1 177 179 281 76 1e-73 MPEVITINDTLELRAVEEQHVAPLHQLVLKNKTWLQQSLNWPQFVTSEEDTRKNVQGNMM LHQRGYAKMFLIFAQQNVVGVISFNQIEPLNKAAYIGYWLDEDRQGKGIMSQALQALIHH YAQRQEIRRFVIKCRVENVESNQVALRNGFQLEGCLRQAEFLNGDYYDVNLYARIIDGPS E >gi|283548478|gb|GG730299.1| GENE 1025 1115433 - 1116413 795 326 aa, chain - ## HITS:1 COG:no KEGG:CKO_01465 NR:ns ## KEGG: CKO_01465 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 326 1 326 326 503 76.0 1e-141 MAKYRLSDELRSFSYQDNGNKKSVLLRQLIALIDFNDVSAGTPGGWIDDESVLSQSGDCW IYDENAIAFYGASITGNARITQASVVRDGAQIGGAAWIDRAEISHHAEIRDNVTVQDSVI RGECLLSGNARVICGSEIIAARGLTRESDQLLKIYDRATISNSRVVHQAQIYGDAVINFA FIEHRAEVFDFARIEGNEENNVWICDCAKVYGHARVIAGTDEDAIPTLRYSSQVAEHAVV EGNCVLKHHVLVGGHATLRGGPIQLDDRILVEGHACILGEVLIENHIEITGQAHIEAFDD EAIHLRGPKVINGEQRITRTPIAGLF >gi|283548478|gb|GG730299.1| GENE 1026 1116527 - 1117528 923 333 aa, chain + ## HITS:1 COG:STM1609 KEGG:ns NR:ns ## COG: STM1609 COG1275 # Protein_GI_number: 16764953 # Func_class: P Inorganic ion transport and metabolism # Function: Tellurite resistance protein and related permeases # Organism: Salmonella typhimurium LT2 # 1 333 1 333 337 528 89.0 1e-150 MSKSKQSERVLNLPAGYFGMVLGIIGMGFAWRYASQIWPVSHWIGDALVILAMVIWGLLT LAFLRRLLHFPHSVLAEIRHPVMSSFVSLFPATTMLVAIGFVPWYRPLAIGLFSIGVVIQ LAYAAWQTAGLWRGAHPEEATTPGLYLPTVANNFISAMACGALGFNDAGMVFLGAGVFSW LSLEPVILQRLRSCGELPAVLRTSLGIQLAPALVACSAWLSVNGGEGDTLAKMLFGYGLL QLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGHGSESGFFHTLSIPLFIFTNF IIALLLIRTFALLMQGKLLIRTERAALLKSEDK >gi|283548478|gb|GG730299.1| GENE 1027 1117528 - 1118124 674 198 aa, chain + ## HITS:1 COG:STM1608 KEGG:ns NR:ns ## COG: STM1608 COG0500 # Protein_GI_number: 16764952 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 198 1 198 198 360 87.0 1e-99 MTLYDENYFTEKYDLTRTHSDVVEAAKIVKPGKTLDLGCGNGRNSLYLAANGYDVTAWDK NAMSIANLERIKAAEGLTNLHTQVADLNSLRFDGEYDFILSTVVLMFLEAKTIPGLIENM QRCTKPGGYNLIVAAMDTDDFPCTVGFPFAFKTGELRRYYSGWDLLKYNEDVGELHRTDE NGNRIKLRFATMLARKTA >gi|283548478|gb|GG730299.1| GENE 1028 1118280 - 1118951 650 223 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A1724 NR:ns ## KEGG: SeSA_A1724 # Name: not_defined # Def: putative lipoprotein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 222 1 222 222 378 86.0 1e-103 MRTQTLFKVAVLTGLLALSGCASKVTEPDKYSGFLKNYSDLKETKSATGQTVLRWVDPNY NESKYDNIVYNPVTYYPVPKPTTQVGQKVLDQLLTYTNTQLKSAISKRKPLVTTPGPRSL IFRGAITGVATSKEGLQFYEVIPVALLVAGTQMATGHRTMDTNLYFEGELIDAATNKPVI KVVRKGEGKDLNNESTPMAFETLKKVVDDMATDATMFDVNKKQ >gi|283548478|gb|GG730299.1| GENE 1029 1118986 - 1119894 905 302 aa, chain - ## HITS:1 COG:PA3897 KEGG:ns NR:ns ## COG: PA3897 COG0697 # Protein_GI_number: 15599092 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pseudomonas aeruginosa # 1 290 1 290 300 219 50.0 4e-57 MNALLYCLVVVIWGTTWIAIYLQQGPVSAPVSIFWRFAVASAVMIIILLVSGKLRKLSAR DHLFCLLQGGCVFCFNFWCFYTAAAWINTGLESVIFSMAVLFNAVNSFLFFGQKPPTRFY FAAGLGLTGIVTLFWQDLLNSGLNHSLLLGIGLSALGTFGFSLGNMISLRHQKKELEVLT TNSWAMLYGTLLIAAIALARGDDFTPQWTFSYLSALLYLAIFGSVIAFGAYFTLVGRIGP SKAAYSTLLFPLVALTLSTLYEGYIWQVNAIAGLVLILLGNLVMFARPEALMGKRLYRRR TA >gi|283548478|gb|GG730299.1| GENE 1030 1120080 - 1120949 647 289 aa, chain + ## HITS:1 COG:PA3898 KEGG:ns NR:ns ## COG: PA3898 COG2207 # Protein_GI_number: 15599093 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 1 288 1 289 293 204 40.0 2e-52 MSQPYGAFENLRKHNAVLHESVALHSGIQLAAWSNKRDTITQYCDHHTLSLYIADGYESY HKTARGWKNGGGPDRFCLMPKESESSWDIRDNLSFVHLYCTDAHLREVGEKVWDKSPYSF TLDEHTFGSDPGITAVYRQFLLDNDWQQPANHLTLSAASSLLLTHLIQHYSNVQWRLPSV TGGLAPATLRNVLAYIEAHLAYPITLSDLASEAALSEFHFARMFRQSMNMAPHQYVMQRR MAQAQHLVRYTSRSLSDIAMACGFSSASHFSNRFKQVTGKTPTQLRAAK >gi|283548478|gb|GG730299.1| GENE 1031 1120932 - 1122098 937 388 aa, chain - ## HITS:1 COG:ydcO KEGG:ns NR:ns ## COG: ydcO COG3135 # Protein_GI_number: 16129392 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in benzoate metabolism # Organism: Escherichia coli K12 # 1 384 88 471 478 521 78.0 1e-147 MRTFSIPLPTVLSGFVAVLVGYASSAAIIWQAAMAAGATTGQIAGWMTALGIAMGVSTLA LTLWYRAPVLTAWSTPGAALLVTGLHGVSIQDAIGIFIVANALIVLCGVTGLFARLMKII PHSLASAMLAGILLRFGLQAFNSLNSELILCGSMLVAWLAFKVRAPRYATIAAMLVGIII ALAKGDIVTNNVNLSPVLPEFIAPHFSFAHSISIALPLFLVTMASQNAPGIATMKASGYA LPVSPLIVFTGLLALLFSPFGVYSICIAAITAAICQSPEAHPDAKRRWLAAAAAGVFYLL AGVFGGSVTGLMAALPVSWIQMLAGLALLGTISGSLYQALHNEAERDAAIITFLVTASGL TLWGVGSAFWGLVAGGVCYAVLTLFRRT >gi|283548478|gb|GG730299.1| GENE 1032 1122204 - 1122740 396 178 aa, chain + ## HITS:1 COG:STM1605 KEGG:ns NR:ns ## COG: STM1605 COG1396 # Protein_GI_number: 16764949 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 177 1 177 178 301 81.0 5e-82 MDNLTLYLATTLRTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLN VPFSTFISPPESDGTPTFDPQQQAMVVTPLFPWDPQLCFDHFSILLAPGAISESTPHESG VIEHVVVINGLLDMCIDERWRTIKAGEGVRFAGDTPHSYRNSGEQTVHFHSLIHYPRS >gi|283548478|gb|GG730299.1| GENE 1033 1122820 - 1124781 1800 653 aa, chain + ## HITS:1 COG:ZydcP KEGG:ns NR:ns ## COG: ZydcP COG0826 # Protein_GI_number: 15801708 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 EDL933 # 6 653 20 667 667 1281 93.0 0 MRQQPHHLELLSPARDTAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR FGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD IRSVEKAKFLADVGFTQIVLARELSLEQINAIHQATDATIEFFIHGALCVAYSGQCYISH AQTGRSANRGDCSQACRLPYTLKDDRGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK IEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARSSAGRTEHFFTPSTEKTFHRGSTDYF VNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDVEVTEPLANGDGLNVLIKREVVGFRAN TVEKTGHNRYRVWPNEMPADLHKVRPHHPLNRNLDHNWQQALTKTSSERRVAVDIELGGW QEQLILTLTSEEGVSITHTLEGQFEEANNAQKALSNLQDGLAKLGQTLYYARDIQVNLPG ALFVPNGQLNQLRREAVEMLDAARLQCYQRGSRKPVSQPAPVYPQTHLSFLANVYNHKAR EFYHRYGVQLIDAAYEAHEEKGDVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN GDEVLTLKFDCRPCEMHVIGKMKHHILKMPLPGSIVASVSPEDLMKTLPKRKG >gi|283548478|gb|GG730299.1| GENE 1034 1124785 - 1125015 242 76 aa, chain - ## HITS:1 COG:no KEGG:ECL_02022 NR:ns ## KEGG: ECL_02022 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 74 1 74 76 97 71.0 2e-19 MFKKGLTGLLLASALFSGQLLATNQGHEYLQVQDADHVLRHTADSDELRVTAEESAADLR EHHFWQKSRKPDTHQG >gi|283548478|gb|GG730299.1| GENE 1035 1125205 - 1125330 141 41 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQSIWKRLMWLAILWGGSVLALAAVGMFFRLLMTAAGFKS >gi|283548478|gb|GG730299.1| GENE 1036 1125330 - 1126340 1145 336 aa, chain - ## HITS:1 COG:STM0361 KEGG:ns NR:ns ## COG: STM0361 COG1294 # Protein_GI_number: 16763741 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 336 1 336 336 454 75.0 1e-127 MGIDLSVIWFVIIVFATLMYIVMDGFDLGIGILFPAIQDADDRDVMVNSVAPVWDGNETW LVLGGAGLFGAFPLAYAVIVDALTIPLTLMLIGLIFRGVAFEFRFKATPAHRPFWDKAFL GGSILATFTQGVVVGAVLNGFSVTGRSYSGGPFDWLTPFTLFCGFGLVVAYALLGATWLV MKSENPLQDKMRGVAKKLLLAMLVVIAIISLWTPLAHSAIAERWFSLPNLWFLMPVPLLV ALISIWLWRSLGQQHSHALPFVLTLGLIFLGFSGLGISIWPHIIPPSITLWQAAAPAQSQ GFMLVGALLIIPIILVYTFWSYYVFRGKVQHGEGYH >gi|283548478|gb|GG730299.1| GENE 1037 1126340 - 1127743 1405 467 aa, chain - ## HITS:1 COG:STM0360 KEGG:ns NR:ns ## COG: STM0360 COG1271 # Protein_GI_number: 16763740 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 4 456 3 456 467 754 85.0 0 MFGLDAFHLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPIWRSLYHFWSKI FAVNFGMGVVSGLVMAYQFGTNWSGFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGW NRVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGYEIVNGQVVPVDWFAVIFNPSF PYRLLHMSVAAFLSSALFVAASAAWHLLRGNNTPAIRAMFSMALWMTLIVAPLQALIGDM HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMEQERTRYGLEIPALGSLILTHS LDKQVPALKEFPKEDRPNSTMVFWSFRIMAGLGMLMILLGAFALWLRYKQRLYTSRPFLR FALWMGPSGLIAILAGWVTTEVGRQPWVVYGLQRTADAVSAHGDLHMSISLLSFFVVYSS VFGVGYSYMIRLIRKGPQEDDPTIPPTGTPARPLSAAVLDSQPEAHR >gi|283548478|gb|GG730299.1| GENE 1038 1127955 - 1128962 404 335 aa, chain + ## HITS:1 COG:no KEGG:CKO_02131 NR:ns ## KEGG: CKO_02131 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 335 1 335 335 484 67.0 1e-135 MSGIDFVVLWVDSSDSAWQASFSQHKAASCHDAGAMHPARFRDMGIFNYWFRCVEKYAPW VRKIHLVTCGQIPAWLNVNHKKLNIVFHEQFIESKYLPTFNSNAIELNIHKINDLSDKFV LFNDDMFITAPLSEDFYFDHEKPNDFLILKRNPPTNKDNLIMGSSDFLNISILNSHFSKR EMMRENKRKYFNMCYKRRVLKNFTSRKEKFFEGFYSRHIPQPFLKSTFNEVWQAEEKLLR ETIGKKFREPLCLTQYLFRYWQLANGTFNPQNPLKRGKYFNLSPKSINDAIKTLTDGTPQ VCFNDTEILNDFDSVTNTLRTAFEKKFNEKSAFEL >gi|283548478|gb|GG730299.1| GENE 1039 1129107 - 1130516 1189 469 aa, chain + ## HITS:1 COG:STM1598 KEGG:ns NR:ns ## COG: STM1598 COG1167 # Protein_GI_number: 16764942 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 1 468 1 468 474 829 89.0 0 MKKYQRLAEQIRDQIASGVWQPGDRLPSLREQVVSSGMSFMTVGHAYQLLESQGRIIARP QSGYYVAARPERELAPPPEQVMRDEAVDINTYIFDMLQASRDASVLPFASAFPDPHLFPL QQLNRSLAQVSKTATAMSVIENLPPGNAELRHAIARRYAQQGMTISPDEIVITAGALEAL NLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSIATDVKEGIDLAALEQALQEYPV KACWLMTNSQNPLGFTLTAEKKAHLVALLEKYHVMLIEDDVYSELYFGREKPLPAKAWDR SDSVLHCSSFSKCLVPGFRIGWVAAGKHARRIQRLQLMSTLSTSSPMQLALVDYLSTRRY DAHLRRLRRQLAERKQQAWQTLLRHLPAEVKIHHNDSGYFLWLELPEPLDAGTLSAQALA HHISIAPGKMFSTSGSWTRFFRFNTAWHWGEREELAVKQLGKLIREMMK >gi|283548478|gb|GG730299.1| GENE 1040 1130846 - 1131991 1432 381 aa, chain + ## HITS:1 COG:ECs2044 KEGG:ns NR:ns ## COG: ECs2044 COG0687 # Protein_GI_number: 15831298 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Escherichia coli O157:H7 # 1 381 1 381 381 730 93.0 0 MSKQFALSSLCALSMTLMTAQAAEPPASLDKPEGRLDIIAWPGYIERGQTDKQYDWVSQF EKDTGCAVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT IDPRVVKGEWFNVGGKVYGTPYQWGPNLLMYNTKIFPTPPDSWNVVFVEQKLEDGKSNKG RVQAYDGPIYIADAALFVKATQPQLGITDPYQLTEKQYQAVIKVLSDQHALIHRYWHDTT VQMSDFKNEGVVASSAWPYQANALKAEGQPIATVFPKEGVTGWADTTMLHSEAKHPVCAY KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGYSYFDKIAFWKTPIAE GGKFVPYSRWTQDYIAIMGGR >gi|283548478|gb|GG730299.1| GENE 1041 1132110 - 1133024 960 304 aa, chain + ## HITS:1 COG:ydcT KEGG:ns NR:ns ## COG: ydcT COG3842 # Protein_GI_number: 16129400 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1 304 35 337 337 537 88.0 1e-153 MLGPSGSGKTTCLRLIAGFEQLSGGAITIFGKQASELPPWERDVNTVFQDYALFPHMSIL DNVAYGLMVKGIDKKQRHAKAREALDKVALGFVHERKPSQLSGGQRQRVAIARALVNEPR VLLLDEPLGALDLKLREQMQLELKKLQQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIE QVDSPRELYMRPRTPFVASFVGTSNVFDATMSANVCGLQGMFSLRPEHIRLNDAGGDVQA RGVIQAVQYQGAATRFELKLAGGEKLLVSQANLTGEMLPSTLSPGQQVMASWSRDVMVPL VEER >gi|283548478|gb|GG730299.1| GENE 1042 1133025 - 1133969 1084 314 aa, chain + ## HITS:1 COG:ECs2046 KEGG:ns NR:ns ## COG: ECs2046 COG1176 # Protein_GI_number: 15831300 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Escherichia coli O157:H7 # 1 314 1 313 313 483 95.0 1e-136 MAMNVLHSPPQPTSLNKISGFFWRNPGLGLFLLLLGPLMWFGIVYFGSLLTLLWQGFYTF DDFTMSVTPDLTLANLQALFNPANYDIILRTLTMAVAVTIASAILAFPMAWYMARYTSGK MKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLTHLGLEPLLISFLTLPAVGGNT LSTSGLGRFLVFVYIWLPFMILPVQAALERLPPSLLQASADLGARPRQTFRYVVLPLAIP GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIAL YLAFVKRLGAFDAL >gi|283548478|gb|GG730299.1| GENE 1043 1133959 - 1134765 718 268 aa, chain + ## HITS:1 COG:ydcV KEGG:ns NR:ns ## COG: ydcV COG1177 # Protein_GI_number: 16129402 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli K12 # 1 261 1 261 264 394 93.0 1e-109 MHSERAPWLLKLAAWGGVIFLHFPILIIATYAFNTEEAAFSFPPQGLTLKWFSVAAQRSD ILESVTLSLKIAALSTAIALVLGTLAAAALWRRDFFGKSAISLLLLLPIALPGIITGLAL LTAFKTINLEPGFLTIVVGHATFCVVVVFNNVVARFRRTSWSLVEASMDLGANGWQTFRY VVLPNLASALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL LVMLVTTLPILGAWWLTRDGDTLAGNGK >gi|283548478|gb|GG730299.1| GENE 1044 1134787 - 1136214 1593 475 aa, chain + ## HITS:1 COG:ECs2048 KEGG:ns NR:ns ## COG: ECs2048 COG1012 # Protein_GI_number: 15831302 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli O157:H7 # 1 474 1 474 474 825 86.0 0 MQHQLLINGELVNGEGEKQPVYNPATGELILEIAEASAAQVDAAVRAADSAFATWGQTTP KVRSELLLKLADAIADNAQTFAELESLNCGKPLHCVLNDEIPAIVDVFRFFAGAARTLQG QAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLT ALKLAEFAKDIYPAGVVNVLFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHIIQHTAPSI KRTHMELGGKAPVIIFDDADLDAVVSGVRTFGYYNAGQDCTAACRIYAQKGIYDALVEKL GAAVASLKIGAPNDESTELGPVSSLAHLERVAKAVDEAKALGHINVITGGKKVDGAGYYF APTLLAGAKQDDAIVQREVFGPVVSVTVFDDEDQVLAWANDSKYGLASSVWTRDVGRAHR FSARLQYGCTWVNTHFTLVSEMPHGGQKQSGYGKDMSVYGLEDYTVIRHVMIKHE >gi|283548478|gb|GG730299.1| GENE 1045 1136402 - 1137592 927 396 aa, chain - ## HITS:1 COG:VCA0267 KEGG:ns NR:ns ## COG: VCA0267 COG0477 # Protein_GI_number: 15601035 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Vibrio cholerae # 26 396 2 371 379 261 46.0 1e-69 MVMRHFSFSNNARLFSVSVDIAMNTRRRPPLWLLTLLIMFPQLVETIYSPALPGIATSFH ISSERAAQTLSVYFVAFAVGVALWGWLSDGIGRRRAMIAGLFCYGTGCGIAVVATDFSVL LLARMVSAIGAAAGSVVVQTMLRDSYESTALSRVFSVMGAALALSPVFGLLSGGWLASLY GHIGVFVALVLLAILLLILAVTLLPETRPENTIPPRMAVLFPRMARDGELWKNAMLIALL NTMLFSYYSLAPFLFGQLGWSARAFGWTGALLAFASLSGSLLNRRLLTTGLMAEQLVRYA CVLAMLSGLAAWRLQHTAWILIPVFGVVLAYGIAIPNVLSQALRRYREQAGAAGALFGLS YYLLLGMMLGIAGIVQQLGLVLTGCALLAWLFSLRR >gi|283548478|gb|GG730299.1| GENE 1046 1137628 - 1138389 443 253 aa, chain + ## HITS:1 COG:VCA0266 KEGG:ns NR:ns ## COG: VCA0266 COG2207 # Protein_GI_number: 15601034 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Vibrio cholerae # 8 250 9 252 257 220 45.0 2e-57 MKIAPDDAFNADSFDTPVIGIAADMGVHDSGRHSHLRHQLLFSAAGSITIELEQAQCLLP PRRAVWIPAGTVHRAIMRGVMAYRSLYFSTSLPLSNLPLQIVEVNPLFFEVIERMAFWSW DMPAAQQASLITVFCEEMRAARSENWTLQFPSDSRLDVWLEELRMGALPPRLNQLSRQVG ACERTIGRIFIRDTGMNYQNWRQQFRLLKAMEMLADGNPVSLVAQHLEFVSDSAFIAFFR QHTGTTPTRFTGN >gi|283548478|gb|GG730299.1| GENE 1047 1138467 - 1138682 78 71 aa, chain + ## HITS:1 COG:no KEGG:CKO_01480 NR:ns ## KEGG: CKO_01480 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 20 71 8 59 59 69 73.0 5e-11 MAERRPSLPADAAINQEVSHQANQPNLADIRLKSPTAAKILISTTVLLETFICATFRFSP YGYSTGYNYPQ >gi|283548478|gb|GG730299.1| GENE 1048 1139007 - 1141166 1621 719 aa, chain - ## HITS:1 COG:STM1595 KEGG:ns NR:ns ## COG: STM1595 COG4458 # Protein_GI_number: 16764939 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria, putative virulence factor # Organism: Salmonella typhimurium LT2 # 1 718 1 714 714 921 68.0 0 MSKMLNTAQAAIEWVTNTRQRSARLDDEADTLLTQLTLAAVHESALKATFSARSSVGLYG HSQSAKAHLLAALCSNANGKVNIVTPDRSFDYFSHINPGHAPTNMAIRFTREENPLHSEW PLRLRLLREAELVQLFITQFCALPDNRQVEKSIIEARLEKWQTLRQRHPVPGITAQDVAA IGRFWRACVPANQQQIDDALWHQFATLLPALDLTTRANAWALLWGEQPELTQQWLALAHT LQQTGNAQELAAPLSLLVDHFGLPAESFLTQVALNGNEAQSDVVVHPIENHQLLNAVSLS QTSLALLTRELVLTVEDAVLENVDLLDIPLAPDVHPHPLWQAKLGWMLEHYRQHLQPDVL LICNAVSTRAQTPAITRKLLGWVNDTQPVHDAALPGVVWAITPQDARFSTRQNLDESVQQ LMGKPGLHWGTLQALDKHSLQRLVEWLTQATSPQQRQARLTSLREQHQQRIRETLIGWLN TGDDESGSSESAIRQLQSQAAKHGELLEGLLPPMRIFESLLRIQQPREEQVIGLFNEEID LFAEVRDTLHSPESKETGYQAHKMWVNHVRQWCRDENNARRLRLEPRTLRQVADILVTTS YRLEMPQRLQRMMQRENVCAAQLHADIGDFITWLGYANVAEAQRPASRIQKGSAIFSAPV QQPMLRLTKLDEQPSHGASRYVYDWLVALYTRANENVGYQHPQDVTEADKKRLEALLSF >gi|283548478|gb|GG730299.1| GENE 1049 1141163 - 1144144 2870 993 aa, chain - ## HITS:1 COG:STM1594 KEGG:ns NR:ns ## COG: STM1594 COG4457 # Protein_GI_number: 16764938 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria, putative virulence factor # Organism: Salmonella typhimurium LT2 # 1 993 1 993 993 1869 90.0 0 MLVNLCDYKQSVTLIANSGVQFLDFGLTPQESAHHGRFVRKTANGPLLRLDFDLTTGRYT LPGSTGGQPEVVKPESTQTLHYSLDVLDGIWLPLPFLRFNPPRTFVEGPDNWARVQVRKL AQPDSAGNTHRVTLALDSQLTDHAPAALTPNENDLLNGTRFALAWHDNEIADFLDQTWID GWLRECFMHHVTQHENRSEQEIQQALRNFEYQAHWLNVLTLLGEQLSIPEVKLVTHTLST PAIPVDLILDIGNTHTCGVLIEDHGDANDGLRQTAELQVRSLSEPQFLNDPLFTSRLEFS EARFGKQHFSVESGRDDAFIWPSIVRVGDEARKLAMQRMGTEGSSGISSPRRYLWDETPV LHDWRFSQMNGKTQREPLATAFPLMNLMNDDGQPLFSLPQDDRLPVFSPQYSRSTLMTHM LCEILAQALGQINSVATRLRLGFPASPRQLRTLILTLPSAMPKQEREIFWLRMFEAIALV WKAMGWHPQDEDFTTRKQQEKSVVPVPEIQMEWDEASCGQLVWLYNEAISHYDGHTESFF NALARPDRLPEPGETKGRALRVASIDIGGGTTDMAVVHYQLDDGVGANVKITPHLLFREG FKVAGDDMLLDVIQRCVLPALQTRLQQAGVTDAAALLATLFGDSGRIDTQAILRQQTALQ LFMPLGHAVLSAWEQSDINDPVAGVHATFGELLSQPPTRNVMNYIQQAIDHALPAGSPAF DVLSVPLQVQFRQLQEALLAGQFTLTSPLHAVCEAISHYRCDILLVTGRPACLPGVQALI RHLQPVPVNRMIWMDNYRVHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKA ADIGAYSTVRYLGVLDNTVNTLRDENIWYHDIDLDKPGAKLDTRLHFPLRGNVTLGFRQL ANSRWPATPLYTLSINSAELAKTIAGDGVLNVRLQLRGGSKESGPEFFTLSDAWLQDGTP VAANALTLKLNTLADRRHSGSHYWIDSGSVYLK >gi|283548478|gb|GG730299.1| GENE 1050 1144149 - 1145456 1108 435 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B1567 NR:ns ## KEGG: SeAg_B1567 # Name: not_defined # Def: ssrAB activated gene # Organism: S.enterica_Agona # Pathway: not_defined # 1 435 1 439 439 612 76.0 1e-173 MAKTLLRSGNLDDYQAVGGGGQAVFDSALQIRETLRLRKQQAMVDCLAIPQINDNGDRVD WYSPIEGKAVAWKAADEEARFRALRYLGSTLENAASLSRKSLQSGKTALQLFGSLLEKAV QFPGENHVFLVDGKPVITFWGFVNLNENPRDDVLDCLRLADIPAVVTVTEPEPEEEIAAE ITFAEADTPLLTPVVEPPKPVEPESQPLAMISEPDVTPPPVQLKPARRLPLWSLPVAAVI IAAIVGPLLWKQQTASPVPAVAPITVAKAEMTALPELTSVLPLHRAEVIPAAKKEKPAAG PVVIAAIPKDALVMDASQMKAGTTRFLNGNWRVMVDVKDPVSGKAPSLRYQIQANKGTAR VVHGDNIVCRAEIFSGLHQSGELMIKSRGNARCTDGSRYPMPEITCKAGTNDVAACTARY DDHAEIPLTIKKIGA >gi|283548478|gb|GG730299.1| GENE 1051 1145739 - 1147337 1653 532 aa, chain + ## HITS:1 COG:PM0236 KEGG:ns NR:ns ## COG: PM0236 COG0747 # Protein_GI_number: 15602101 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Pasteurella multocida # 2 523 1 521 532 589 55.0 1e-168 MIARKTLLALALSAGLPSGAAFAANTDTIIYCSEASPESFNPQIASSGPSFVASSQVLYN RLINFDPVKNTPIPSLATDWTISPDGKIYTFTLRQGVKFNSNKFFKPSRDFNADDVVFSV LRQKDADHPYHKVSQGSYEYFNDVGLDKLIKEVKKLDDYHVQFVLNEPNAAFLADWGMDF ASILSAEYADAMLKKGTPENVDNWPIGTGPYVLQQYKQDSQIRYLANPNYWDGAVPTKHL IFSITPNVQTRLAKLQTNECQIIPAPAPVQFDEIKKNKDLTLHSVEALNVGYLAFNTEKK PFDNLLVRQALNYATDKKAIINAVFLGSGTVAKSPIPPNMMGFNKDLKDYAYDPQKAKDL LKQAGLENGFEATLWSMPVQRPYNPNSRRIAEMIQSDWAKVGVKAKIVSYEWGEYLSGMR KGEHDTALFGWMSDNGDPDNFADVLLGCDSIKTGSNAARWCDKEYNSLVQKAKLVSKPEE RAALYQQSQEIFYQQAPWIALANGKTFYATRSNVSGYSVNLMGSDFSKAKLN >gi|283548478|gb|GG730299.1| GENE 1052 1147355 - 1147588 387 77 aa, chain + ## HITS:1 COG:no KEGG:G2583_1807 NR:ns ## KEGG: G2583_1807 # Name: ydcY # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 77 1 77 77 103 93.0 2e-21 MSHLDEVSARVDAAIEESVITHMNELLIELSDDAALSREDRYTQQQRLRTAIAHHGRQHK EDMEARHEQLTKGGTIL >gi|283548478|gb|GG730299.1| GENE 1053 1147625 - 1148074 433 149 aa, chain - ## HITS:1 COG:ydcZ KEGG:ns NR:ns ## COG: ydcZ COG3238 # Protein_GI_number: 16129406 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 149 1 149 149 211 93.0 5e-55 MNQTLTLSFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLVGIVLFVSILWFKQGAA GFGELLSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVASQLIGGLALDILRSH GVPLRALVGPVCGAVLLVVGAWLVARRSF >gi|283548478|gb|GG730299.1| GENE 1054 1148071 - 1148589 531 172 aa, chain - ## HITS:1 COG:yncA KEGG:ns NR:ns ## COG: yncA COG1247 # Protein_GI_number: 16129407 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Escherichia coli K12 # 1 170 1 170 172 316 88.0 1e-86 MSIRFASKADCAAIAEIYNHAVLHTAAIWNDQTVDAENRIAWYEARQLMSYPVLVSEENG VVTGYASFGDWRNFDGFRHTVEHSVYVHPEHQGKGLGRALLGRLIEEARACGKHVMVAGI ESQNQASLHLHSTLGFKTTAQMPQVGTKFGRWLDLTFMQLQLDDRLEPDASR >gi|283548478|gb|GG730299.1| GENE 1055 1148627 - 1149202 495 191 aa, chain + ## HITS:1 COG:mll1444 KEGG:ns NR:ns ## COG: mll1444 COG1396 # Protein_GI_number: 13471465 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 1 171 1 171 187 202 56.0 2e-52 MNTIEDSINQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLS GAFGISMSMLIARAEMQEGKLLRFADQPVWHDPQSHYLRRHVSPRSDLPIDLVQIELPAG SDIPMPASSYVQARQLIWLQQGELVFVEGDVRHEMQAGDCLELGPPNDCRFINETAQPCV YLVVRLNHAVS >gi|283548478|gb|GG730299.1| GENE 1056 1149260 - 1150297 1180 345 aa, chain + ## HITS:1 COG:STM1589 KEGG:ns NR:ns ## COG: STM1589 COG2130 # Protein_GI_number: 16764933 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 345 12 356 356 654 89.0 0 MGQQTNRNRRWVLASRPHGAPVPDNFRLEEDEVATPGEGQVLLRTVFLSLDPYMRGRMSD EPSYSPPVEIGGVMVGGTVSRVVSSNHPDYQPGEWVLSYSGWQDYDISDGNGLVKLGDNP EHPSWALGVLGMPGFTAYMGLLDIGQPKAGETLVVAAATGPVGATVGQIGKLKGCRAIGV AGGAEKCRHATEVLGFDVCLDHHAHDFAQQLAKACPQGIDIYYENVGGKVFDAVLPLLNT SARIPLCGLVSGYNATSLPGGPDRLPLLMATLLKKRIRMQGFIIGQDYGHRIHEFQREMG RWVKEGKIHYREQITDGLENAPQTFIGLLTGKNFGKVVIRLADDA >gi|283548478|gb|GG730299.1| GENE 1057 1150329 - 1152449 1730 706 aa, chain - ## HITS:1 COG:STM1587 KEGG:ns NR:ns ## COG: STM1587 COG1629 # Protein_GI_number: 16764931 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Salmonella typhimurium LT2 # 1 706 1 706 706 1203 83.0 0 MTIFSARYTVFPVSLLPVFLSPFATAESEINEQTLIVSATPQAVSELDTPAAVSVVTGED MRLATPRINLSESLTSVPGLQVQNRQNYAQDLQLSIRGFGSRTTYGIRGIRLYVDGIPAT MPDGQGQTSNIDISSVQNIEVLRGPFSALYGNASGGVINVSTETGREPPTIEASSYYGSF DTWRYGLKATGALGDGTQPGDVDYTVSTTRFTTHGYRDRSSAQKNLANAKLGVRVDDASK LTLIFNSVDSEADDPGGLTGSEWHADPQQSPRAEQFDTRKTIKQTQAGLRYERQLSAQDD ISIMTYAGERETTQYQSFPMAPQLRPSHAGGVIALQRHYQGIDNRWTHRDDWGIPVTFTT GVNYENMSENRKGYNNFRLDDGVPEYGQKGDLRRNERNLMWNVDPYLQTQWQLTQKLSLD AGVRYSSVWFDSNDRYITPGNGDDSGDVSYHQWLPAGSLKYAMTDAWNIYLAAGRGFETP TINELSYRSDGQSGMNLGLQPSTNDTIEIGSKTRIGDGLFTAALFQTDTDDEIVVDSSNG GRTTYKNAGKTRRQGAELAWDQRFAGNWRVKAAWTWLDATYRSNVCSDQNCNGNRLPGIA QNMGFASLGYVPDEGWYAGTDIRYMSDIMANDENTAKAPSYTVVGLNTGYKFYYSSLMVD LFGRVDNLFDKAYVGSVIVNESNGRYYEPAPGRNYGVGINLAWRFE >gi|283548478|gb|GG730299.1| GENE 1058 1152711 - 1153772 1391 353 aa, chain + ## HITS:1 COG:ECs2056 KEGG:ns NR:ns ## COG: ECs2056 COG3391 # Protein_GI_number: 15831310 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 353 1 353 353 568 90.0 1e-162 MSLRHLFSPRLRGSLLLGSLLVASSFTTQAAEEMLRKAVGKGAYEMAYSQQENALWLATS QSRKLDTGGVVYRLDPVTLEVTQVIHNDLKPFGATINPTTQTLWFGNTVNSAVTAMDAKT GAVKGRLVLDARKRSEDVRPLQPRELVADDATNTVYISGIGKESVIWVVDGDAIKLKDTI QNTGKMSTALAVDSKAKRLYTANADGEFITIDTSTNKILSRKKLLDDGKEHFFINLSLDT AGNRAFVTDSKAAEVLVIDTRNGNVLAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID AKSYKVVKTFETPTFPNSLALSADGKTLYVSVKQKSTREQEATQPDDVIRIAL >gi|283548478|gb|GG730299.1| GENE 1059 1153909 - 1154130 216 73 aa, chain + ## HITS:1 COG:no KEGG:STM1585 NR:ns ## KEGG: STM1585 # Name: not_defined # Def: outer membrane lipoprotein # Organism: S.typhimurium # Pathway: not_defined # 1 73 1 73 73 106 79.0 3e-22 MKKPFICLCAGVMLFTLAGCTTDYVMTTKSGQTITTQGKPKLDKDTGMTSYTDQDGNARE INSNDVAQLIEAD >gi|283548478|gb|GG730299.1| GENE 1060 1154173 - 1155615 1827 480 aa, chain - ## HITS:1 COG:STM1584 KEGG:ns NR:ns ## COG: STM1584 COG1113 # Protein_GI_number: 16764928 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Salmonella typhimurium LT2 # 1 480 1 480 497 835 95.0 0 MNTHNTQAAEQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAG PALALVYLVCGIFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAM TGIVDITAVALYMHYWGAFGDVPQWVFALGALAIVGTMNMIGVKWFAEMEFWFALVKVLA IVIFLVVGTVFLGTGKPLDGNATGFHLITDNGGFFPHGLLPALVLVQGVVFAFASIELVG TAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVLLLPWNAYQAGQSPFVTFFSKLGV PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMSMGGSAPKFMAKMSRQQVPWAGILATL VVYVVGVFLNYLVPSQVFEIVLNFASLGIIASWGFIMVCQMRLRRAIKEGKTADVSFKLP GAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIASLPLIAILLVAGWFGVRKRVAEVHRTAP >gi|283548478|gb|GG730299.1| GENE 1061 1155948 - 1156946 1035 332 aa, chain + ## HITS:1 COG:AGl2803 KEGG:ns NR:ns ## COG: AGl2803 COG2141 # Protein_GI_number: 15891512 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 323 4 327 335 280 48.0 3e-75 MSYRLSILDKSPIGEGETAAMALARTLRLAQRAEEWGYHRFWIAEHHNTPQLASPSPELV IAWILGQTQRIRVGSGGVMLQHYSPYKVAENFNLLASLAPGRVDLGVGKAPGGLPLSTQA LQHGLHQDEKGSFADQLSQLNGWLALNGTESGETVFPTPIPPQPPEGFVLGASVQSAQLA AQSNWNFIFAAHLNGDRALLHDVLSFWQSHSARPTIVAVQVIVAESNDTAAQLAENVQIW GVELENGQRVTVASEEQALAFAAQAGSPPRKIARRELALLHGTAQEVMAKLNALHTQFGI DEFIIDTPVAQGDARLTSLRLLAQAHNTVEVL >gi|283548478|gb|GG730299.1| GENE 1062 1156946 - 1158067 968 373 aa, chain + ## HITS:1 COG:CAC0921 KEGG:ns NR:ns ## COG: CAC0921 COG1473 # Protein_GI_number: 15894208 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Clostridium acetobutylicum # 7 366 14 375 382 336 44.0 5e-92 MALGSTLIDWRRELHQHPELSLQEEATTARIHAWLHAADIDILPFNLKTGLVAEIGQGED VIALRADIDALPIEESADVPFRSLTPGVMHACGHDVHTSVMLGAALLLKQQETDLPGRVR ILFQPAEESFGGAKTLIRAGALQNVAAIFGMHNEPGLPVGDFATRGGAFYANVDRFVLRI NGKGAHAARPHEGKDAILLASQLVTVLQSVASRDVNTLDSVVLSVTRIQGGNTWNVLPES VELEGTLRTHRIEVQQQVKARVNDIAAGFAHAFGAQIDVIWHAGPTALVNDARWADIATA VAKQSGYTTHHAALHMGGEDFAVYLQNTPGAFVSIGSASEYGLHHPGFNPDERLIEPAAH YFAQLAKTAFAHL >gi|283548478|gb|GG730299.1| GENE 1063 1158093 - 1159406 966 437 aa, chain + ## HITS:1 COG:lin2437 KEGG:ns NR:ns ## COG: lin2437 COG2141 # Protein_GI_number: 16801499 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Listeria innocua # 1 434 1 434 440 537 58.0 1e-152 MAENRQLRLGTILHGASGNMSAWRHPAAQADASINFDFVKETALIAEKGKLDFIFVADGL YINEKSIPHFLNRFEPLTVLSALASITQHLGLVGTVSTSYSEPFTTARQFASLDHLSQGR AGWNVVTSPLEGSAKNYSRARHPEHAQRYRIADEYLQVVKGLWDSWEDDAFTRNKASGEF FNPQKLHTLNHHGDYFQVAGPLNIGRTPQGRPIIFQAGASADGKKLAAQHADAIFTHQES LAEAKAFYQDVKSQLENAGRHPDQLHIFQGVSVIVGDSAEDVERQYQTTAALVSISDALN YLGRYFEHHDFAQYPLDAPFPELGSLGENSFRSTTDEIKRNARERGLTLRQVALEAASPR PRFSGTPQQVADGLQQWFDEQAADGFIIQGGTPDTFPRFVEQVVPVLQARGLFRHEYPGT TLRASLGLATPANQFTQ >gi|283548478|gb|GG730299.1| GENE 1064 1159424 - 1160356 1225 310 aa, chain + ## HITS:1 COG:AGl2811 KEGG:ns NR:ns ## COG: AGl2811 COG0834 # Protein_GI_number: 15891517 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 36 308 38 309 312 263 54.0 2e-70 MQKKSVFLALSLAFSATVWANDVTINGTGVSLEANKTPINTAKNPQAIAQLPANLHLAVP GKFTVAIAGLSQPPLTVFADDNKTLIGSEADIARLVADSLGLELNVVPTSWEDWPLGVTS GKYDAAISNITVTKARKEKFDFATYRKDSLGFYVKTGSKLKKIEQAEDIAGLRIIVGSGT NQEAILLAWNDENVKKGLQPFTPVYTKDDAAQTLALQSGRADAYFGPNVIGAWKAALNGK TQLVGSVDGGWPKAAHIAVTLKKDSGLVLPVQTALNGVIGNGDYDKVLNRWGEGVERIPQ SEINPAGLGD >gi|283548478|gb|GG730299.1| GENE 1065 1160367 - 1160876 538 169 aa, chain + ## HITS:1 COG:AGl2808 KEGG:ns NR:ns ## COG: AGl2808 COG0454 # Protein_GI_number: 15891515 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 159 1 164 181 133 47.0 2e-31 MSDQFRVVSPEASELQPILNGLFGEYAARYGDYFSRDAEVELTEWYLAPQGLFVVLERNG EIIATGAYKPYDKDTAEIKRIWTKSSLRQQGLAARVVQELERRALLAGYSRIYLTTGFRQ PEAVRLYLSQGYDPQFDTARDPEEYSQPPFDGRLRFTKLLTIAGQARIA >gi|283548478|gb|GG730299.1| GENE 1066 1160886 - 1161812 1014 308 aa, chain + ## HITS:1 COG:AGl2810_1 KEGG:ns NR:ns ## COG: AGl2810_1 COG0765 # Protein_GI_number: 15891516 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 267 22 281 283 268 59.0 1e-71 MKTTDSIKVVPARYPMRTVGAVIALFVMAVIIQSVAFNPRWEWGVFARWFFDPVILSGLG QTLLLTLIGTLLSIIIGGLLALARLSSSWLLNGLAWGYIWLFRSLPLIVVLIVLYNFSYL YDTLTIGIPFTPIQWGSFETINVLGQFSTAVVGLTLVQSAYTAEIIRGGFLGVDHGQYEA AAALGLPAWRRTLRIILPQALRTILPAGFNEIISLAKGTAMVYVLAMPELFYTIQMIYNR TQEVIPLLMVGAVWYLVITSVLSLIQHIVERALARSERRSAINTARVTRAEKRSRQRPQQ EAAHVPLA >gi|283548478|gb|GG730299.1| GENE 1067 1161796 - 1162569 250 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 241 1 228 309 100 30 2e-19 MSHSPEGHISITGVSKYFGRHKALDNVSLEIPPGTVTVILGPSGSGKSTLLRTINHLERV DEGFIQIDGDYIGYRRQGDKLYELKEAEILCQRVNVGYVFQNFNLFPHLTVLENLIEAPI AHGLASRKAATERALTLLDAVGLRNKADAWSRHLSGGQQQRIAIARALALNPRVMLFDEP TSALDPELVGEVLDVIKALARSGTTLVVVTHEIGFAREVADQVVFMVDGKIVEQGSSEQV LNHPQHTRTQQFLSKVL >gi|283548478|gb|GG730299.1| GENE 1068 1162616 - 1163605 690 329 aa, chain - ## HITS:1 COG:mll7162 KEGG:ns NR:ns ## COG: mll7162 COG0604 # Protein_GI_number: 13475965 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Mesorhizobium loti # 1 329 1 329 329 319 51.0 5e-87 MSKVVVFKQTGGAEVLNIQEMQVPAPQSNEVQIRVHAIGINRAEIMYRTGQYIYQPNFPA RLGYEASGIVEAVGDNVHEFAPGDSVSVIPAFSFHEYGMYGEIVNAPVHAVVKHPENLSF AEAAASWMMYVTAFGALVEYANIGPGDNVLINAASSSVGLAAIQIANMLSAKPIAMTRTS EKRSQLLQLGAADVIASHEQDLVAEISRITDGKGTRVVFDPVGGPGVAKIAQVMPAGGIF FQYGSLDARDLSIPVIEILGRHLTFRGYEIFEITSDVEKLSRAKRFIFEGLQSGQLKPLI DKTFVFDDIVKAHQYMEANGQVGKIVVTL >gi|283548478|gb|GG730299.1| GENE 1069 1163695 - 1164624 317 309 aa, chain - ## HITS:1 COG:RSp1110 KEGG:ns NR:ns ## COG: RSp1110 COG0583 # Protein_GI_number: 17549331 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 6 295 4 294 315 260 43.0 3e-69 MRSSMFEYMNIFVQVVEQGGFARAAEVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSL TDEGEAFYQRTKVLLADVDDIMASFSPTRPPRGKLRVNAPLSLAHSVLVPALKDFQSRYP DIEMILTSTDRRIDLLAEGIDCMIRIGELQDSSLISRRLGAVKMVTCASPDYLQQHGIPQ TPEDLSRHQAVNFFSERHREALEWSFVSADETVSFTPAGRISVDNSDILLTGCLAGLGII RGVHAVLAPYLQSGQLVEVLANYAGESKPVSVLYPDRRHLAPRVRVFIDWLCELFCQQKP RLQRLLQNE >gi|283548478|gb|GG730299.1| GENE 1070 1164746 - 1165363 442 205 aa, chain + ## HITS:1 COG:yncG KEGG:ns NR:ns ## COG: yncG COG0625 # Protein_GI_number: 16129413 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli K12 # 1 205 1 205 205 354 80.0 7e-98 MIKVYGVPGWGSAISEVMLTLAEIPYHFVDVSGFDSAGASRDLLKKLNPLCQVPTLTLEN GEVMTETAAIALTILDRCPELSPPVGRSERQQFQRLLIWLVANVYPTFTYADYPDRWAPD APAQLKKNCIEYRKSLYMWLNDQLSAEPYAFGDQLTLLDVYLCVMRTWGPGHDWFQDNTP NISAIADAVCQHPRLRTVLKNNKII >gi|283548478|gb|GG730299.1| GENE 1071 1165401 - 1165628 358 75 aa, chain + ## HITS:1 COG:ZydcE KEGG:ns NR:ns ## COG: ZydcE COG1942 # Protein_GI_number: 15801678 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Escherichia coli O157:H7 EDL933 # 1 75 14 88 88 119 76.0 2e-27 MPHIDIKCFPRDLNDEQKSALAADITEVIIRHLQSKDSSVSVALTEIEPEAWQGVWDAEI APQMDTLIKKPGYRM >gi|283548478|gb|GG730299.1| GENE 1072 1165665 - 1165784 137 39 aa, chain - ## HITS:1 COG:no KEGG:ECL_02158 NR:ns ## KEGG: ECL_02158 # Name: not_defined # Def: putative hydrolase # Organism: E.cloacae # Pathway: not_defined # 2 39 620 657 657 72 86.0 5e-12 MLKQAQDSGDVKITDDGAKLNAMLGYMDKFEFWFNIVTP >gi|283548478|gb|GG730299.1| GENE 1073 1165806 - 1166423 572 205 aa, chain - ## HITS:1 COG:yddH KEGG:ns NR:ns ## COG: yddH COG1853 # Protein_GI_number: 16129421 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Escherichia coli K12 # 9 203 11 205 205 351 83.0 5e-97 MFIVMCYRSAKGIAMSHFRPIELKHASRLLNHGPTILITSRDEHTERRNVMAAAWSMPVE FEPPRIAIVVDKTAWSRELIERSGKFGIVIPGVAAANWTWAVGSVTGRAEDKFNCYGIPV VQGPVLGLPLIEAKCLAWMECRLLPATAAQEKYDTLFGEVVSAAADERAFMEGRWQFDDD KLNTLHHLGAGTFVTSGKRVIAGEK >gi|283548478|gb|GG730299.1| GENE 1074 1166540 - 1167385 871 281 aa, chain + ## HITS:1 COG:nhoA KEGG:ns NR:ns ## COG: nhoA COG2162 # Protein_GI_number: 16129422 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Escherichia coli K12 # 1 281 1 281 281 469 80.0 1e-132 MTPFLTAYFARIGWTGSASANIETLRALHLLHNSAIPFENLDVLLPREMQLDDVSLEEKL VTARRGGYCFEQNGILERALREMGFTVRSLLGRVVLANPSSLPPRTHRLVLVELQEEQWI ADVGFGGQTLTAPIRLQANITQQTPHGEYRLIQEGEDWILQFRHHEHWQSMYRFDLVVQH QSDFLMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTHYQDGHAVEQINLPDVA SLYTLLQERFGLGVDDAKHGFTEAELATVMAAFDTHPEAGK >gi|283548478|gb|GG730299.1| GENE 1075 1167445 - 1168347 935 300 aa, chain - ## HITS:1 COG:ECs2067 KEGG:ns NR:ns ## COG: ECs2067 COG0384 # Protein_GI_number: 15831321 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Escherichia coli O157:H7 # 1 298 1 295 297 511 84.0 1e-145 MKPQVYHVDAFTSVPFRGNSAGVVLHADGLSEAQMQLIARELRHSETAFLLTSDDSDVSD VRIRYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGRHRVDIAATENGYRIS LEQGEPGFEPPLGGAVRAAIIDALHLSEDDMLPGLPIQVATTGHSKVMIPLKSEVNLDAL SPDLHALTAISKEIGCNGFFPFQIRKGENATDGRMFSPAIGIVEDPVTGNANGPMGAWLV HHGLMAHDGKTLRVQGHQGRALGRDGIVDVTVTIRDNQPEKVTITGSAVILFHAEWAIDF >gi|283548478|gb|GG730299.1| GENE 1076 1168452 - 1169132 742 226 aa, chain - ## HITS:1 COG:STM1580 KEGG:ns NR:ns ## COG: STM1580 COG2181 # Protein_GI_number: 16764924 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Salmonella typhimurium LT2 # 1 226 1 226 226 382 86.0 1e-106 MIQYLNVFFYDIYPYLCGTVFILGSWLHYDYGQYTWRASSSQMLDKRGMVLWSNLFHIGI LGIFFGHLFGMLTPHWMYAWFLPIAVKQQMAMILGGVCGVLTLVGGAGLLVRRLTNSRIR ATSSTADILILCVLLVQCILGLTTIPFSAQHPDGSEMLKLVGWAQSVVTFQGGASAHLDG VAPIFRAHLVLGMTIFLLFPFTRLVHVWSAPLEYFTRRYQIVRSRR >gi|283548478|gb|GG730299.1| GENE 1077 1169129 - 1169824 809 231 aa, chain - ## HITS:1 COG:narW KEGG:ns NR:ns ## COG: narW COG2180 # Protein_GI_number: 16129425 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Escherichia coli K12 # 1 231 1 231 231 391 87.0 1e-109 MQILKVIGLLMEYPDALLWECKDDALALVSSDAPMLTEFSQGLLNAPLLDKQAEWCEVFD RGRATSLLLFEHVHAESRDRGQAMVDLLAQYEQVGLQLNCRELPDHLPLYLEYLSVLPEA QAKEGLQNVAPILALLGGRLKQRDTPWYQLFDALLLLAGSPLSSDSVTKQVGAETRDDTR QALDAVWEEEQVKFIEDNATACDSSPLQNYQRRFSQDVAPQYVDVSAGGPK >gi|283548478|gb|GG730299.1| GENE 1078 1169824 - 1171368 1654 514 aa, chain - ## HITS:1 COG:STM1578 KEGG:ns NR:ns ## COG: STM1578 COG1140 # Protein_GI_number: 16764922 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Salmonella typhimurium LT2 # 1 514 1 514 514 1077 95.0 0 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNVETKPGIGYPKNWEDQE EWQGGWVRDVNGKIRPRLGGKMGVITKIFANPVIPQIDDYYEPFTYDYQHLHSAPEGKNQ PTARPRSLIDGKRMDKIIWGPNWEELLGGEFSKRARDRNFEKMQKEMYGQFENTFMMYLP RLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSGKS EKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDADRIEEAASTEHETDLYERQCNVFL NPHDPAVIEEALKQGIPHNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSP IQSVADAGGLPHNGNILPAVESLRIPVQYLANMLSAGDTGPVLRALKRMMAMRHYMRSQT VEGVTDTRAIEEVGLTVEQVEEMYRYLAIANYEDRFVIPTSHREMARDAFPEKNGCGFTF GDGCHGSDTKFNLFNSSRIDAIDITEVRDKAEGE >gi|283548478|gb|GG730299.1| GENE 1079 1171365 - 1175105 4026 1246 aa, chain - ## HITS:1 COG:STM1577 KEGG:ns NR:ns ## COG: STM1577 COG5013 # Protein_GI_number: 16764921 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Salmonella typhimurium LT2 # 1 1246 1 1246 1246 2481 94.0 0 MSKLLDRFRYFKQKGDTFAEGHGQVMHTNRDWEDSYRQRWQFDKIVRSTHGVNCTGSCSW KIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLVRKRLIE LWRDALSRQPDPVLAWGSIMNDPQKCQSYRQVRGRGGFIRSNWKELNQLIAAANVWTVKT YGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYCDLPPASPMTWGEQTDVPE SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTIAITPDYSEVAKLCDQWLAPKQ GTDSALAMAMGHVILKEFHLDRPSDYFLNYCRRYTDMPMLVLLDARENGSYVPGRMLRAS DLIDGLGESNNPEWKTVAFNSEGELVVPNGSIGFRWGETGKWNLESLAAGAETELSLSLL GQHDDVAGVAFPYFGGNENPHFRSVKQEPVLVRQLPVKRLTLVDGSSCPVVSVYDLVLAN YGLDRGLDDVHSAQDYSEVKAYTPAWGEQITGVPRRHIEQIAREFADTAHKTHGRSMIIL GAGVNHWYHMDMNYRGMINMLVFCGCVGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNR PPRQMNSTSFFYNHSSQWRYEKLTAQELLSPLADASKFSGHLIDFNVRAERMGWLPSAPQ LNLNPLTVKAKAEQAGLSPVEYTAQALKSGDIRFACEQPDNGNNHPRNLFVWRSNLLGSS GKGHEYMLKYLLGTESGIQGEALGSSDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCL FSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKAFSEVCVGH LGQETDVVLQPLQHDSPAELAQPFDIQDWRKGECDLIPGKTAPNIAVVERDYPATYERFT SLGPLMDKLGNGGKGIAWNTQAEVDFLGKLNYTKRDGPAKGRPLIDTALDASEVILALAP ETNGQVAVKAWEALGAMTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLESEHV SYNAGYTNVHELIPWRTLSGRQQLYQDHAWMRAFGESLVAYRPPIDTRSVSEMRDVPPNG FPEKALNFLTPHQKWGIHSTYSENLLMLTLSRGGPIVWISETDAKELGIEDNDWIEAFNA NGALTARAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGG YAQLAYSFNYYGTVGSNRDEFIMIRKMKNINWLDDEGRDQVQEAKK >gi|283548478|gb|GG730299.1| GENE 1080 1175240 - 1176628 1096 462 aa, chain - ## HITS:1 COG:narU KEGG:ns NR:ns ## COG: narU COG2223 # Protein_GI_number: 16129428 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Escherichia coli K12 # 1 462 1 462 462 695 86.0 0 MSSSNEKNNRYLLTDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVAVNL NKIGFNFTTDQLFLLTALPSLSGAILRVPYSFMVPIFGGRRWTIFSTIILVIPCVWLGFA VQNTATPFGVFIIIALMCGFAGANFASSMGNISFFFPKAKQGSALGVNGGLGNLGVSVMQ LIAPLVIFVPMFTFLGVQGVPQADGALLSLANAAWIWVPLLLIATLAAGMGMNDIASSKA SIASQLPVLKRFHLWLLSLLYLATFGSFIGFSAGFAMLSKTQFPDVNILQLAFFGPFIGA LARSAGGVISDKFGGVRVTLINFMFMALFSALLFLTLPGSGEGNFVAFYLVFMGLFLTAG LGSGSTFQMIAVIFRKITIYRVKLRGGTEEQAQREAVTDTAAALGFISAIGAVGGFFIPK AFGSSLALTGSPVGAMKIFLVFYIVCVLVTWLVYGRRRPKQK >gi|283548478|gb|GG730299.1| GENE 1081 1176839 - 1177417 635 192 aa, chain - ## HITS:1 COG:STM1575 KEGG:ns NR:ns ## COG: STM1575 COG1309 # Protein_GI_number: 16764919 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 191 1 191 192 290 78.0 9e-79 MSYLNRDERREVILQAAMRVALEEGFTAMTVRRIAAEAHVATGQVHHHFASAGELKSQAF VRLIRTLLDAELVSENASFRERLHAMLGSEDGGFEPHIRLWREAQVLADKDSEIKSAYLL TMRMWHEETANIITQGQKAGEFLPSPDAADVAWRLIALVCGLDGMYVLGIEEMADPAFEH HLDRMISLELFN >gi|283548478|gb|GG730299.1| GENE 1082 1177535 - 1179022 1540 495 aa, chain + ## HITS:1 COG:STM1574 KEGG:ns NR:ns ## COG: STM1574 COG0477 # Protein_GI_number: 16764918 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 495 1 495 495 644 87.0 0 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLP MGALGDRIGFKRLLLLGGGVFGLASLAAAFAHNASWLIATRAVLAIGAAMIVPATLAGIR ATFAEQRHRNMALGVWAAVGSGGAAFGPLVGGMLLEHFYWGSVFLINVPIVIVVMALTAR LVPRQDGSRDQPLNFGHAIMLIVAILLLVYSAKTALKGHMATAAIALTLLTGALLLGQFV RIQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLTPYQAGLF MLPVMLASGFSGPIAGMLVSRLGLRCVATAGMALSAVSFYGLAMTDFSTQQIQAWVLMAL LGFSAASALLASTAAIMAAAPAEKAAAAGAIETMAYELGAGLGIAIFGLLLSRSFSASIL PPAGLNPQEIERASSSMGEAVQLAHSLPSSLSEALLAAAREAFTWSHSVALSSAGSMLIV LAVGMWFSLAKVQRQ >gi|283548478|gb|GG730299.1| GENE 1083 1179023 - 1179463 295 146 aa, chain - ## HITS:1 COG:STM1573 KEGG:ns NR:ns ## COG: STM1573 COG3791 # Protein_GI_number: 16764917 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 21 146 1 126 126 222 83.0 2e-58 MQTFTGRCLCGQSHFTVDVEMLDVYACHCTLCQKWSGGIAMYLEASAHPQMSADSAQPSH FPSSNRGERFFCSGCGCPLWFTLTGSDRYFVPWTLLELNEVDRRRLVLAAEIYTETQPAF WRLTGQYARLSGKEVEEMDYPCHLAH >gi|283548478|gb|GG730299.1| GENE 1084 1179547 - 1180626 1378 359 aa, chain - ## HITS:1 COG:STM1572 KEGG:ns NR:ns ## COG: STM1572 COG3203 # Protein_GI_number: 16764916 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Salmonella typhimurium LT2 # 1 359 1 362 362 545 85.0 1e-155 MKLKLVAVAVTSLLAAGAVNAAEVYNKDANKLDIYGKVHAQHYFSDDTSSDGDKTYARLG FKGETQINDQLVGFGQWEYEFKGNRSESEGSDKDKTRLAFAGLKFAEYGSFDYGRNYGVA YDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNTDFFGLVEGLNFAAQYQGKNDRN NEVEANGDGFGLSTTYEYEGFGVGATYAKSDRTDRQVRNGNNSLYASGQNAEVWAAGLKY DANNIYLATTYSETRNMTTFGKIDGIANKAQNFEAVAQYQFDFGLRPSVAYLKSKGKDLG NFGDQDLVEYVDLGATYYFNKNMSTFVDYKINLLDGNNFTRIAGVSTDNIVAVGLNYQF >gi|283548478|gb|GG730299.1| GENE 1085 1181085 - 1181966 625 293 aa, chain - ## HITS:1 COG:ECs2077 KEGG:ns NR:ns ## COG: ECs2077 COG0697 # Protein_GI_number: 15831331 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 293 1 293 293 443 85.0 1e-124 MTKQKATLIGLIAIVLWSTMVGLIRGVSEGLGPAGGAAMIFSLSGLLLIFTVGLPNISKI PVRYLIAGSVLFASYEICLALALGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTTW LVIPGLIIALIGVCWVLGGENGLNPDEIISNVASSPLSYFLAFLGAFIWATYCTVTNKYA KGCNGITVFVLLTAASLWVYYFMTPQPEMVFSTPVTIKMFTAALTLGFAYAAWNIGILHG NVTIMAVGSYFTPVLSSALAAVLLSAPLSLSFWQGALMVCAGSLLCWLATRRA >gi|283548478|gb|GG730299.1| GENE 1086 1182253 - 1182840 415 195 aa, chain + ## HITS:1 COG:STM1570 KEGG:ns NR:ns ## COG: STM1570 COG0243 # Protein_GI_number: 16764914 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 195 1 195 1015 403 96.0 1e-112 MDVSRRQFFKICAGGMAGTTVAALGFAPKMALAQARNYKLLRAKEIRNTCTYCSVGCGLL MYSLGDGAKNAKESIYHIEGDPDHPVSRGALCPKGAGLLDYVHSENRLRYPEYRAPGSDK WQRISWDEAFSRIAKLMKTDRDANFIEKNEQGVTVNRWLSTGMLCASAASNETGMLTQKF ARSLGMLAVDNQARV >gi|283548478|gb|GG730299.1| GENE 1087 1182889 - 1185300 2815 803 aa, chain + ## HITS:1 COG:STM1570 KEGG:ns NR:ns ## COG: STM1570 COG0243 # Protein_GI_number: 16764914 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 803 213 1015 1015 1606 95.0 0 MTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIY APIRSGTDITFLSGVLLYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAKKRQ YDKSSWNYQFDENGYAKRDETLSHPRCVWNLLKQHVSRYTPDVVENICGTPKEDFLKVCE VLASTSAADRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ GLTDLGLLSTSLPGYLTLPSEKQADLQTYLAANTPKATLADQVNYWGNYPKFFVSLMKSF YGNAAQKENDWGFEWLPKWDQSYDVIKYFNMMDSGKVTGYICQGFNPVASFPDKNKVVQC LSKLKYLVIIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRW LQWHWKGQDAPGEARNDGEILAGIYQRLRDMYRTEGGKAVEPVLKMSWNYKQPDEPHSEE VAKENNGYALEDLYDASGVLIAKKGQLLNSFALLRDDGTTSSSCWIYTGSWTEQGNQMAN RDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADPQGKPWDPKRMLIQWNGTKWTGNDIPD FNTAAPGSGTNPFIMQPEGLGRLFAIDKMAEGPFPEHYEPMETPLGTNPLHPNVISNPAA RLYEADKLRMGTKQDFPYVGTTYRLTEHFHTWTKHALLNAIAQPEQFVEISETLAAAKGI NNGDHVKVSSKRGFIRAVAVVTRRLRTLNVNGQQVETVGIPIHWGFEGVARKGFIANTLT PNVGDANSQTPEYKAFLVNIEKA >gi|283548478|gb|GG730299.1| GENE 1088 1185313 - 1186197 877 294 aa, chain + ## HITS:1 COG:STM1569 KEGG:ns NR:ns ## COG: STM1569 COG0437 # Protein_GI_number: 16764913 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 1 294 1 294 294 595 95.0 1e-170 MSMETQDIIKRSATNAITPPPQARDYKAEVAKLIDVSTCIGCKACQVACSEWNDIRDEVG HCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQ YANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCP TGAIHFGTKQEMLEMGEQRVAKLKARGFEHAGLYNPEGVGGTHVMYVLHHADQPELYHGL PKDPHIDTSINLWKGALKPLAAAGFIATFAGLIYHYVGIGPNKEVDDEEEDHHE >gi|283548478|gb|GG730299.1| GENE 1089 1186190 - 1186846 894 218 aa, chain + ## HITS:1 COG:STM1568 KEGG:ns NR:ns ## COG: STM1568 COG2864 # Protein_GI_number: 16764912 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 218 1 218 218 403 94.0 1e-112 MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFF GLLIFVALMFMFVRFVHHNIPDKKDIPWLKNIVEVLKGNEHKVADVGKYNAGQKMMFWSI MSMIFVLLITGIIIWRPYFAQFFPMQVVRYSLLIHAAAGIILMHAILIHMYMAFWVKGSI KGMIEGKVSRRWAKKHHPRWYREVERQEAKKESEEGVK >gi|283548478|gb|GG730299.1| GENE 1090 1186948 - 1187232 269 94 aa, chain - ## HITS:1 COG:yddM KEGG:ns NR:ns ## COG: yddM COG3093 # Protein_GI_number: 16129436 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Escherichia coli K12 # 1 94 27 120 120 158 91.0 2e-39 MKMANHPRPGDIIQEALDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI GSSPEMWLNLQNTWSLAEAQKNVDTSRLRRLAVQ >gi|283548478|gb|GG730299.1| GENE 1091 1187731 - 1189446 1582 571 aa, chain - ## HITS:1 COG:AGc1553 KEGG:ns NR:ns ## COG: AGc1553 COG0488 # Protein_GI_number: 15888191 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 19 491 17 493 504 237 34.0 5e-62 MSTLLTAQSLHVETAFGTLFDELSFTLKKGDRIGLMGYNGCGKSTLLKLLDGTISPTSGT ISQANYCHLARVEQHLPDDILPLTLQEAVLAQLPEHERAGQQWRVEALLAEMGFTAENLS LTAQTLSGGQHTRLLLARALMRNPDLLLLDEPGNHLDLPTLLWLEQFLQNWSGSFVVVSH DSQLLDAVTHGTWILRDRTIHAFDLPCSAARQALAERDASEALRHKAEQKEIDRVTASAK RLATWGRVYDNEDLSRKAKQMEKQVLRLKELQTEVTSGSQWTLTLQGDALRADRLLEMTN LSVAPAPGADTLFSIAGIRLKSGDRVAIVGRNGCGKSSLLRLIWQQFQSQLASPSLVLHP RVTLGYYDQTLHQLADNDSLFDALEAFAPQPEIRKMALISAGFPWVRHAQRVSTLSGGER SRLLFVGLTLARYSLLMLDEPTNHLDMEGKEALAETLQSYQGGVLLVSHDRQLISQSCNR FWFIDNGELSEWHDLDAINDRIRQTSTEITVPETVVEARAEISGDSDGLLEQLVELEQRL ADDLARKPKHQKPLLQAQWRQEIERLNSLLE >gi|283548478|gb|GG730299.1| GENE 1092 1189559 - 1189642 95 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLYCERFIVSHAFGDRQCSSVIGIVLR >gi|283548478|gb|GG730299.1| GENE 1093 1189755 - 1191452 2072 565 aa, chain - ## HITS:1 COG:sfcA KEGG:ns NR:ns ## COG: sfcA COG0281 # Protein_GI_number: 16129438 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1 565 10 574 574 1085 94.0 0 MENETKKLRSLYIPYAGPVLLEFPLLNKGSAFSAEERRNFNLLGLLPEVVETIEEQAERA WIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVHNHLDEMMPVIYTPTVGAACERFSEIYR RARGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYT ACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDEEYYEFVDEFIQAVKHRWPD VLLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAAVTVGTLIAASRAAGSQLSEQNIVF LGAGSAGCGIAEQIIAQIQREGLSEEAARQRVFMVDRFGLLTDKMPNLLSFQTKLVQKRE NLQHWDTQEDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPCPIVMPLSNPT SRVEATPQDIIAWTEGNALVATGSPFAPVVWKEKVFPIAQCNNAYIFPGIGLGVIASGAS RITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQTVSRAIAFAVGKMAQQQGVAVKTS AEALQQAIDDNFWQAEYRDYRRTSI >gi|283548478|gb|GG730299.1| GENE 1094 1191633 - 1191773 206 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15801657|ref|NP_287675.1| 30S ribosomal subunit S22 [Escherichia coli O157:H7 EDL933] # 1 44 1 44 45 84 88 3e-14 MKSNRQARHILGLDHKISNQRKVVTEGDKTNVVNNPTGRKRRADGK >gi|283548478|gb|GG730299.1| GENE 1095 1192002 - 1192433 583 143 aa, chain + ## HITS:1 COG:osmC KEGG:ns NR:ns ## COG: osmC COG1764 # Protein_GI_number: 16129441 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli K12 # 1 143 1 143 143 257 93.0 5e-69 MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGVKGTNPEELIGAAHAACF SMALSLMLGEAGFTPDAIDTTADVSLDKVEAGFAITKVALHSEVSVPGIDAAAFDGIIQK AKAGCPVSQVLNAEITLDYQLKS >gi|283548478|gb|GG730299.1| GENE 1096 1192480 - 1193250 834 256 aa, chain - ## HITS:1 COG:PA2003 KEGG:ns NR:ns ## COG: PA2003 COG1028 # Protein_GI_number: 15597199 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Pseudomonas aeruginosa # 1 256 1 256 256 348 71.0 4e-96 MNLTGKTALVTGSTSGIGLGIAQVLAHAGATLILNGFGDVEAAKDAVAQYGKTPGYHGAD LSDDAQIADMMRYAASEFGGVDILVNNAGIQHVSPIETFPVDKWNAIIAINLSSVFHTTR LVLPGMRARNWGRIINIASVHGLVASKEKSAYVAAKHGVVGLTKTIALETAQTGITCNAL CPGWVLTPLVQQQIDKRIAEGAEPDAARDALLAEKQPSREFVTPEQLGELALFLCSDGAA QVRGVAWNMDGGWVAQ >gi|283548478|gb|GG730299.1| GENE 1097 1193262 - 1194653 1643 463 aa, chain - ## HITS:1 COG:PA2004 KEGG:ns NR:ns ## COG: PA2004 COG2610 # Protein_GI_number: 15597200 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Pseudomonas aeruginosa # 1 463 1 463 463 609 78.0 1e-174 MSVLIALAALGLLMLAAYRGYSVILFAPIAALGAVLLTEPSAVGPAFTGLFMEKMVGFVK LYFPVFLLGAVFGKLIELSGFSRSIVAAAINILGRRHAIPVIVLVCALLTYGGVSLFVVA FAVYPFAAELFRQSNIPKRLIPATVALGAFSFTMDALPGTPQIQNIIPTSFFGTNAWAAP WLGLIGSLFIIFVGLIYLERQRRKAQAKNEGYGTELLNEPETPDNINLPNPIIAISPLIL VGVFNLLFTRWIPQWYGATHQLELPGLAKPITTEVGKITAIWAVEAALISGILLVVLFGY RNIKGRLAEGSRTAVGGAILAAMNTASEYGFGAVIAALPGFLVLSKALAAIPDPLLNEAI SITTLAGITGSASGGMSIALAAMSDTFIAAAHAANIPLEVFHRVASMASGGMDTLPHNGA VITLLAITGLSHRQAYGGIFAITVIKSLAVLFVIGVFYTTGIV >gi|283548478|gb|GG730299.1| GENE 1098 1194700 - 1195623 1024 307 aa, chain - ## HITS:1 COG:mlr6793 KEGG:ns NR:ns ## COG: mlr6793 COG1250 # Protein_GI_number: 13475669 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Mesorhizobium loti # 4 301 3 298 309 159 30.0 7e-39 MKNKPICVLGAGLMGIGIATHFARFGHDVWLYDTNSGRIAEISIVASGILDELIATEQFA AGEKASVVNRLHGTTSLQEIAGCGLLIEAIPERLELKHALYAQLEELIAPEAVIASNTSG LPPDALAEKLAHPERLLIAHFWNPPHFIPLVEIVPGTATKAEYLHELQQLLLSMQLEAVV LDRAAPGFVGNRLQFALLREALHIVKSGIASAEVVDQVMRASLGRRYAMVGPLEAADMTG LATVQDICRHLLPELATGSEMMSLVADKVANGDTGLRSGQGFYRWDDSRKEYIQQRREHQ LRFALKP >gi|283548478|gb|GG730299.1| GENE 1099 1195613 - 1196818 1194 401 aa, chain - ## HITS:1 COG:PA2001 KEGG:ns NR:ns ## COG: PA2001 COG0183 # Protein_GI_number: 15597197 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Pseudomonas aeruginosa # 1 393 1 392 393 502 70.0 1e-142 MQDVVIVAATRTPIGSFHGALAPLSAVELGSVVIHALLEKTAVAPEHVDEVIFGQVLTAG CGQNPARQTALRAGLPVTTPALTINLVCGSGLKAVHQAVQAIRCGDAQIVIAGGQESMSN APYFLDGARAGLRLGHASMKDSVVHDGLWDAFNDYHMGITAENLADKFVISREQQDAFAL RSQQKAAAAIEAGRFSAEITPVSVPQGKKPPRIVDRDEQPRPDTQADKLAQLKPAFRPGN GTVTAGNASSINDGAAAVMLMSAAKAAELNLPVLGRVASYAVSGVEPAIMGIGPVDASLQ CLKRAGWTLNEVDLIEANEAFAAQALAVGESLNWDRERVNVNGGAIALGHPIGASGCRIL VTLLHEMARRNAAKGLATLCVGGGQGVALAVERPQGVSHEK >gi|283548478|gb|GG730299.1| GENE 1100 1196829 - 1197485 880 218 aa, chain - ## HITS:1 COG:PA2000 KEGG:ns NR:ns ## COG: PA2000 COG2057 # Protein_GI_number: 15597196 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Pseudomonas aeruginosa # 2 217 3 218 218 370 87.0 1e-102 MLTREQMAMRVARELRDGYYVNLGIGIPTLVANYIPEGMDVMLQSENGLLGMGPFPTEDE IDADMINAGKQTVTARKGAAIFDSAQSFAMIRGGHVDLTVLGAFEVDVNGNIASWMIPGK MVKGMGGAMDLVAGADNIIVVMTHAAKNGESKLLPACTLPLTGVACIKRVLTDLALLEIA DGAFILRERAPGISVEEIVARTAGKLIVPENVPEMHFS >gi|283548478|gb|GG730299.1| GENE 1101 1197488 - 1198195 855 235 aa, chain - ## HITS:1 COG:PA1999 KEGG:ns NR:ns ## COG: PA1999 COG1788 # Protein_GI_number: 15597195 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Pseudomonas aeruginosa # 1 231 1 231 232 368 83.0 1e-102 MAGLDKRVATYQEALEGLTDNMTLLAGGFGLCGIPENLIAEVRRREVQGLTVVSNNCGVD GFGLGVLLETRQVRKVVASYVGENALFEKQVLSGELEAILTPQGTLAEQLRAGGAGIPAF FTATGYGTPVAEGKEVREFAGRPYILEQAITGDFALVKGWKADWYGNVIYRHTAQNFNPL MAAAGRITVVEVEEIVPPGELDPAAIHTPGIFVNRIIQGQFEKRIEQRTLRQKGA >gi|283548478|gb|GG730299.1| GENE 1102 1198338 - 1199228 820 296 aa, chain + ## HITS:1 COG:PA1998 KEGG:ns NR:ns ## COG: PA1998 COG0583 # Protein_GI_number: 15597194 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 3 290 1 288 306 340 65.0 2e-93 MGMSIKQLRAFLAVAHTLNFAHASERLNMSQPALSLAIKGLEDSLGGALLLRTTRKVTLT QEGETLLSMGRQLLADWENTEEAMRQRFTLQRGKISIAAMPSFAANVLPSVLKTFRDSYS GINVTVHDVINEQVIEMVSEGRVEMGIAFEPDYSGHLHFTPLGVDRFIAIVPPTCRLAGR ERIAWRELLTLDFITLQRPSAVRLMLEEQLVQSGHSLEVALESHQLVTIGRLVAKGLGGS AVPALCRTQMAELGATCIDLDTPVIQRRIGVLRSAHHKLSTASEVLVETLKKAYRA >gi|283548478|gb|GG730299.1| GENE 1103 1199242 - 1200183 616 313 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 2 301 8 318 329 241 39 8e-62 MSDYLLALQDVHVNFPARKNWLGKVTERVHALNGLDLQIRRGETLGIVGESGCGKSTLAQ LLMGMLKPSQGDFAHHGDKPFNGMQMVFQDPLSSLDPRLPVWRIITEPVWIQKRSAERER RILAEDLAQQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSEPDVIVLDEPTSALDISVQ AQILNLLVSLQARRNLTYVLISHNVSVVRHMSDRVAVMYLGQIVELGEAQQVLTHPAHPY TRLLLDSVPKTGTPLAEDLVVRKTELPGNRTLPQGCFFRDRCPLAIRGCENKQALLKSET GSEVRCWRAVNMS >gi|283548478|gb|GG730299.1| GENE 1104 1200176 - 1201174 469 332 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 324 3 327 329 185 34 9e-45 RKTVMTQPVLEIEDLHLSFPGYKADVHALNHVSLHINRGEIVGVVGESGSGKSVTAMLTM RLLPEGSYRIHQGRISLLGEDVLSASEKQMRQWRGARVAMIFQEPMTALNPTRRIGQQMV EVIRHHQALSRADARQKAIALLDEMQIPDAAEVMKRFPFELSGGMRQRVMIALAFSCEPE LIIADEPTTALDVTVQLQVLRLLKLKARASGTAVLFISHDMAVVSQLCDRLYVMYAGSVI ESGPTQTVIQHPTHPYSIGLLKCAPEHGEPRALLPAIPGTVPNLTCLPAGCAFRERCFAA GPRCEETPALSRQGGAEQQSACWYPQLETTHV >gi|283548478|gb|GG730299.1| GENE 1105 1201159 - 1202052 1086 297 aa, chain - ## HITS:1 COG:ECs2089 KEGG:ns NR:ns ## COG: ECs2089 COG1173 # Protein_GI_number: 15831343 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 297 2 298 298 465 85.0 1e-131 MLTQETPVAPQIGRRRTDWAKLFWMMKSSPLTLIGAAIIVLILLLMALSPWITPYDPNAI NLSARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSVVAGLVVVGIAGGLGSLLGCLSGVM GGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAVVRIPFYVRLARGQTLV VRQFTYVQAARTYGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQ PSAEWGAMVAIGRNYVLDQWWYCAFPGAAILITAVGFNLFGDGIRDLLDPKAGGKQS >gi|283548478|gb|GG730299.1| GENE 1106 1202052 - 1203074 299 340 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 70 332 46 310 320 119 27 5e-25 MTFWSILRQRCWGLILVVIGVCVITFIISHLIPGDPARLLAGDRASDEIVDNIRQQLGLN QPLYVQFFRYVSDIFQGDLGTSIRTGRPVLDELRIFFPATLELAFCSLLLALVIGIPLGI LSAVWRNRWLDHLVRLMAITGISTPAFWLGLGAIVLFYGHLQILPGGGRLDDWLDPPAHV TGFYLIDALLEGNGEVFFNALQHLILPSLTLAFVHLGIVARQIRSAMLEQLSEDYIRTAR ASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQAL DFPAVMGFAVVVSFAYVLVNLAVDLLYLWIDPRIGRGGAE >gi|283548478|gb|GG730299.1| GENE 1107 1203119 - 1204681 1897 520 aa, chain - ## HITS:1 COG:ddpA KEGG:ns NR:ns ## COG: ddpA COG0747 # Protein_GI_number: 16129446 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Escherichia coli K12 # 11 520 7 516 516 894 88.0 0 MKTTPALNAFFRPALIAVALAFALPAAQAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTV TYPSYQRLVQYKTEGGKGSTEVEGDLASGWKASDDQKEWTFTLKNDAKFADGTPVTADAV KQSFERLLKIGQGPAEAFPKDLKVEAIDNNTVKFTLSQPFAPFLYTLANDGASIINPAIL KEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYSGAKPTFKRVSVKIIGESA SRRLQLSRGDIDIADALPVDQLAALKQEGNVNVVDYPSLRVTYLYLNNSKAPLNQVDLRR AISWATDYKGMVNGILSGNGKQMRGPIPEGMWGFDDKAMQYSFDEAKAKAAWDKVVSKPE SLSFLYSDNDPNWEPIALSTQASLSKLGIKVKLEKLANATMRDRVGKGDYDIAIGNWSPD FADPYMFMNYWFESDKKGLPGNRSFYENGEVDKLLRSALATTDPVARTNDYQQAQTIVID EAAYVYLFQKNYQLAMNKDVKGFVFNPMLEQVFNIATMSK >gi|283548478|gb|GG730299.1| GENE 1108 1204697 - 1205284 614 195 aa, chain - ## HITS:1 COG:ddpX KEGG:ns NR:ns ## COG: ddpX COG2173 # Protein_GI_number: 16129447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Escherichia coli K12 # 1 193 1 191 193 322 80.0 4e-88 MSETPELVDLSVIFPSLHIDLKYATADNITGAPIYQEARCLLHSEAVTALAKSISIAQLA GLSLVVYDAYRPQQAQAVLWNACPDPQYVVDVAIGSNHSRGTAIDVTLMDERGNVLDMGA GFDEMHDRSHAWHPSVPPAAQRNRLLLNAIMFGGGFVGINSEWWHFELPDAARYPLLDDQ IACFPVTPITTQHPL >gi|283548478|gb|GG730299.1| GENE 1109 1205299 - 1206165 849 288 aa, chain - ## HITS:1 COG:SMc01602 KEGG:ns NR:ns ## COG: SMc01602 COG1737 # Protein_GI_number: 15965969 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 11 275 14 277 292 74 24.0 2e-13 MTAKPELLTRIERSFSQLTPSEKRVAGWLLAHAVQIPFETADGIAKAAGTSGITVGRYLR KLGFRNLEDAKASLREIPVVPYQPWGMNERLDSWHQQQSLPDRAHQSLLLEIDAITHVYQ LAQGETFLRIAQQLAHAEAVYILGIQSTRGIANAFFSHLEYLRPKVSYSEGLSGSWVESL NSGFNQPYVVITDVRAYSAVSRQYCRVATERQIPLALITDVWCPWARDYDLDLLQVKTDT GHFWDSLAPVSCLFNLLLSAVVAQLGDALAGRLQTNRQLQQQFGQFEQ >gi|283548478|gb|GG730299.1| GENE 1110 1206567 - 1206896 404 109 aa, chain + ## HITS:1 COG:no KEGG:SARI_01409 NR:ns ## KEGG: SARI_01409 # Name: hdeB # Def: acid-resistance protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 109 1 109 109 179 88.0 3e-44 MNKFSLSTAGILVAALLTSVSVNAATDSAKTEVTPKGMSCQEFIDLNPQTMAPVAFWVLN EDEDFKGGDYVDYNETVTTAVPLTVELCKKHPQSELSKIKDEIKKELSK >gi|283548478|gb|GG730299.1| GENE 1111 1207052 - 1208995 1717 647 aa, chain + ## HITS:1 COG:RSc3307 KEGG:ns NR:ns ## COG: RSc3307 COG0840 # Protein_GI_number: 17548024 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Ralstonia solanacearum # 170 641 183 643 646 260 39.0 5e-69 MAWYPTRISTRLTIGGILLLAVTTLVIVAIMLWRGQPRVVEINTALIEETGQGLTRQLST VLSRIEGETVSMSRLAEVLPTDESLYQSVVPHLIGEDKESIITGGGIWPEPDAFTAGVEK RSFFWARNAEGKLVYSNDYNVEGSSGYHNESWYQHAKGHSPNGCLWSDVYQDASSGVNMV TCSVPYLLAGKFAGVATTDIRLDNVATFMQQQGNSTGGYAFVVDKQGQILYFPQADLTKH KTINDLAQSAPWLISVENGLKSLRPADGVKTITLANDNVLNTASRVMLFPMADTGWVVGL VTPESRIVGLAKVMMQDVLEVLIPIMTLLLVGSWLVVRRLISRLDDTRRALDDIAQGEGD LTRRLDVRGKDEISAIAEAFNLFVDKISAILITVRSSSVVVANNAVSLADSNMELSSRVT QQAAALEESSAAMEQLNATVHQNASNTQLADELSDSTAQTANRCGDVMQGVISTMDNVSA SSGRMVEIVAVIDSIAFQTNILALNAAVEAARAGDAGRGFAVVASEVRTLAQRSATAAQE IKALIDESVSHVGSGSQQIHNAGERLGELVNNVRQVRQLMGEIRVAGEEQRKGVSEVTLA VTEMDSTVQQNASLIDDAAARTQALKEEAEQLALLVSSFRLPEPAVA >gi|283548478|gb|GG730299.1| GENE 1112 1209041 - 1209361 248 106 aa, chain - ## HITS:1 COG:ECs4473 KEGG:ns NR:ns ## COG: ECs4473 COG1566 # Protein_GI_number: 15833727 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli O157:H7 # 2 106 275 378 378 133 62.0 7e-32 MGDEAEIVFNGLPGLVVQGKVVSVAPVIPTGAYYAQGTLQSLNVTPGSNKVLVSIEVDNN QAEQQLPDGVAAQVAVYSAQHFEALSLLRKILLRMTSWMHYLYLDH >gi|283548478|gb|GG730299.1| GENE 1113 1209383 - 1210180 664 265 aa, chain - ## HITS:1 COG:yiaV KEGG:ns NR:ns ## COG: yiaV COG1566 # Protein_GI_number: 16131457 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli K12 # 1 265 1 265 378 331 61.0 1e-90 MEILLTLTYAAIVYVIFKVFKVPLNKWTLPSAVLGGVVMLGALILTMNYNHPYTEDAQKL VVGIPVVPQVTGVVSEVTDKINTPIKKGDVLFKIDPARYKAKLEKLEADIVTAKHDVLAL EEKRNSARLQLEQARAERDKYYKNYQRYQKGSQAKVNPFTANDIDTARQDYLAQDAAMNA ANAELNSIQKELDSTIHGQNSQIASLQAQIDEARFNYEQTIVRAPSDGYVSQLLVRPGTY ASRLPFKPVMVFIPAQKNQIVAAFR >gi|283548478|gb|GG730299.1| GENE 1114 1210183 - 1210524 123 113 aa, chain - ## HITS:1 COG:no KEGG:Kvar_1460 NR:ns ## KEGG: Kvar_1460 # Name: not_defined # Def: hypothetical protein # Organism: K.variicola # Pathway: not_defined # 1 104 1 107 114 133 64.0 2e-30 MLLNYVSLAILILVFLIVFYGVLILHDIPYEIAKKRNHPHLDAIHVAGWVSLFTLHAIWP FLWIWATLYSDKHGWHGNTSGHDTAELNARITLLEKTLEQTHSAYGPQDSKVN >gi|283548478|gb|GG730299.1| GENE 1115 1210566 - 1210751 87 61 aa, chain - ## HITS:1 COG:no KEGG:Ent638_3905 NR:ns ## KEGG: Ent638_3905 # Name: not_defined # Def: ion transport 2 domain-containing protein # Organism: Enterobacter_638 # Pathway: not_defined # 4 52 76 124 132 62 61.0 6e-09 MYDSLYFSITSFATVGYGDLLLPRFWEISGSLEGMTGALLTGWSVALLVAVVVLESGEKQ R >gi|283548478|gb|GG730299.1| GENE 1116 1211155 - 1211814 408 219 aa, chain + ## HITS:1 COG:no KEGG:Spro_3698 NR:ns ## KEGG: Spro_3698 # Name: not_defined # Def: CRP/FNR family transcriptional regulator # Organism: S.proteamaculans # Pathway: not_defined # 26 213 33 216 226 91 32.0 2e-17 MNFTEPSMTSNTEQTGSSEELLSTNIAILFNALLPLSEAQSLYRSGSFIMDSQGENGIWL LTEGRIVIRRRIDGLILASQQAPMMLGMAEFFLPTGNNFYDIEAVSPCTTHVVKKTDFMT IVNRDRLWESVAIVEAYIIQVMSQRDRLITSRTATDMVWGHLELLQQEPDDIRKRIPAVQ YIRERTGLSRSTIMDTLARLKRQGAIQLHRGHLICISAD >gi|283548478|gb|GG730299.1| GENE 1117 1211943 - 1213310 1145 455 aa, chain - ## HITS:1 COG:Z2217 KEGG:ns NR:ns ## COG: Z2217 COG1649 # Protein_GI_number: 15801647 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 46 454 27 438 439 668 79.0 0 MPASGFFSGKYQKKLANIFARCHGRVPLTNMKWFAVLVGSMLLLGSCSSQPPGSKVTPLP PVSKPQQSKEPVRGIWLATVSRLDWPPISSVNISSPAVRISLQQKALTDKLDNLKRLGIN TVFFQVKPDGTALWQSKILPWSDTLTGTIGQDPGYDPLQFMLDEAHKRGMKVHAWFNPYR VSVNTKPSTVAELNSTLSQTPSSVYVLHRDWIRTAGERFVLDPGIPEVRDWITSIVTEVV ENYPVDGVQFDDYFYTESPGSALNDSQTFRKYGQGFVSKADWRRDNTQRLIAQVSRTIKK LKPDVEFGVSPAGVWRNRSHDPAGSDTRGAAAYDESYADTRRWVQLGLLDYIAPQLYWPF ARDAARYDVLAKWWADVVKSTNTRLYIGVALYKVGEPSRKEPDWTVKGGVPELKKQLDLN ESEPHINGTILFREDYLNQPQTQEAVTYIRSRWGH >gi|283548478|gb|GG730299.1| GENE 1118 1213323 - 1213610 270 95 aa, chain - ## HITS:1 COG:YPO1157 KEGG:ns NR:ns ## COG: YPO1157 COG4628 # Protein_GI_number: 16121453 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 1 69 1 69 81 99 65.0 1e-21 MNAHNSKDPLHGVTLEMQVNALVDRFGWAELAQRININCFKNEPSVKSSLKFLRRTPWAR AEVEALYLDSLHDVTPFNNTTPAIDPWANSRNKKK >gi|283548478|gb|GG730299.1| GENE 1119 1213843 - 1214757 398 304 aa, chain - ## HITS:1 COG:RSc0625 KEGG:ns NR:ns ## COG: RSc0625 COG2207 # Protein_GI_number: 17545344 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Ralstonia solanacearum # 7 301 15 309 321 330 59.0 3e-90 MISDKSVEKLLGELSGDIAQRTPGTGDFPTAVEGLELFRRNEPAPPVSCLVPPSIVLVAD GAKIMWVGGEPYEYNTEKFLITSLDLPASSEVLQASTSRPCVGVAYKLDQRVLMELIAQG SLPPVKKRDATTGVGIGTITDVLLEPFCRLLSLLDEPEAIPVLGPLIQREIHYRLLMSDR SDHLRQIAAVDGHGYRIGKAIDWLKTNIASPLRVEELASRVQMSTPSFHQHFRQLAGMSP LRYQKWLRLNEARRLMLNDHYDVTTAAYAVGYESLSHFSREYTRMFGESPKRDITVLRKS AGKL >gi|283548478|gb|GG730299.1| GENE 1120 1215026 - 1216105 782 359 aa, chain + ## HITS:1 COG:PA2218 KEGG:ns NR:ns ## COG: PA2218 COG1073 # Protein_GI_number: 15597414 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Pseudomonas aeruginosa # 12 357 18 367 367 523 72.0 1e-148 MTLKSSARFFNGALLSGAMALMSTEAAVAQPAPGTADSSVRLVQTWDKTFPRSDKVDHQK VTFKNRYGITLAADVYFPKDRGNKKLAALVISGPFGAVKEQASGLYAQTLAERGFVTLAF DPSYTGESSGEPRNIASPDINTEDFMAAVDFIGLQPYVDRERIGVIGICGMGGIALNAVA VDKRVKAVVASTMYDMSRVMSKGYNDSVTPEQREQALEKMSLQRWEDAASSKPAYQPAYN KLKGGEAQFLVDYANYYMTKRGYHPRAVNSGNSWSVTTPMAFMNFPLMTYIKEISPRPIL FIHGEKAHSLYFSKTAYEAANQPKELLIVKDATHVDLYDRMDKIPFDNITAFFNKNLNK >gi|283548478|gb|GG730299.1| GENE 1121 1216236 - 1216550 178 104 aa, chain + ## HITS:1 COG:ECs3965 KEGG:ns NR:ns ## COG: ECs3965 COG4680 # Protein_GI_number: 15833219 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 104 1 104 104 128 58.0 3e-30 MHLISMKAITEGCERYPQHRKDILLFGRTIEKANCPTPEALRQFYPSLDNFKYLDKHYVI NISNNNLRVIALIFFESQKFYIRHIFNHTEYDKFTAQHRTKGKK >gi|283548478|gb|GG730299.1| GENE 1122 1216550 - 1216963 286 137 aa, chain + ## HITS:1 COG:ygjM KEGG:ns NR:ns ## COG: ygjM COG5499 # Protein_GI_number: 16130977 # Func_class: K Transcription # Function: Predicted transcription regulator containing HTH domain # Organism: Escherichia coli K12 # 1 137 1 137 138 131 52.0 4e-31 MIATEALKATQALIAAVPLLGDSPSEKDYNNALELVEELLIENPSSPLLDIVCARITEYE RQQPDIQALREEMAAIPAGLAVLRTLMDQYNLTISDFADEIGSKSMVSRVLKGERQLNVN HIKKLSDRFNISPAAFI >gi|283548478|gb|GG730299.1| GENE 1123 1217579 - 1218103 534 174 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|184158399|ref|YP_001846738.1| acetyltransferase [Acinetobacter baumannii ACICU] # 1 171 1 171 178 210 56 3e-52 MLETPRLIIRQWEDKDREPFAALNADPDVMRFFPSPLQKAESDLLADRFSDGIEARGWGF WAVELKETHQFVGSVGLHPQPDKFSFSPCTEIGWRLAKAYWHQGLATEAAEACLTFAFEE LRLNEVVSFTSVLNKPSERLMKRLGMKKIAEFAHPALPAEHILAQHVLYQIEFK >gi|283548478|gb|GG730299.1| GENE 1124 1218495 - 1219895 1434 466 aa, chain + ## HITS:1 COG:CAC1590 KEGG:ns NR:ns ## COG: CAC1590 COG0471 # Protein_GI_number: 15894868 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Clostridium acetobutylicum # 2 466 12 476 476 448 48.0 1e-125 MNRYLKVLICAIVAIAIWFTPVPEGLTELTWHILAIFITTVVAFILQPLPVGAIALIAIS FIMLTGMMTTSEALKGFSSTTVWLIVAAFLYAKGFIKTGLGRRIAYLLIRGFGGSSLRLG YTLALSDMIIAPATPSNTARAGGILFPIVRGVSSSFGSEPDQEPRKIGAYLMQTVFHSNC LSSSMFMTASAPNALIVSLAASTLFVDISWGMWTLSALVPGIVAFITLPLVIYKFYPPEI KKTPQAKALAQAELEKMGPVSRDERMTIGIFLLSLLAWSTSKLTGLDATAVALSGVCLML MTHVINWQDVQSEKGAWDILVWLGVMICMADKLNQLGLFKWFAVTTSALFTGIPWEITLT VLLVVYCYSHYFFAGSTPHVVAMYAAFGSVSVAAGAPPMMAALSLAFVTNLMSGISHYGN GPAVIYYGAGYVSQRDWWRLGFIVMLINIVIWFGLGAVWWKILGLW >gi|283548478|gb|GG730299.1| GENE 1125 1219929 - 1220885 774 318 aa, chain + ## HITS:1 COG:YPO2536 KEGG:ns NR:ns ## COG: YPO2536 COG1052 # Protein_GI_number: 16122754 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Yersinia pestis # 1 317 1 314 316 265 43.0 7e-71 MNLKEISVVIVGKLSDRLMEKVESTFTAYRLWELTDTDAFWAEKANDIQALVTSGNPVMG ASRALMEKCPNLKIIASNGVGYDSIDVAAANELGIIVTNTPGVLNDCVADIGMALLLNVA RRVNIADRYVREGRWPTEGRFPMATKVSGKRCGIVGLGNIGHAVARRAAAFEMDIHYYDP KPHNKPEWTAHNTLISLAEAVDFLVLTLPGGAKTRGLIDKEILRALGKNGYLISISRGSV VNETDLIHALENNVIAGAALDVYAHEPNVPEALIKLDNVVLTPHIASGTSETFNAMADLV FANLHAFFTGKPVITQVK >gi|283548478|gb|GG730299.1| GENE 1126 1220901 - 1221380 427 159 aa, chain + ## HITS:1 COG:yiaL KEGG:ns NR:ns ## COG: yiaL COG2731 # Protein_GI_number: 16131447 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 159 1 154 155 98 33.0 5e-21 MIYGDIALMTPCQIGALHPTIAKVIRYLSQNDLSLFPPGEKFYIQDDTIFFTVVEPMTKP LNECRPEVHRKYLDVHFLIAGQERICVSFDDGKNEVIETHPGERDVTFYAGDRIKDNVVT LTPGQFVIVFPEEVHRACYMVDHPEKIKKTVVKIDLSLL >gi|283548478|gb|GG730299.1| GENE 1127 1221393 - 1222136 639 247 aa, chain + ## HITS:1 COG:SMb20662 KEGG:ns NR:ns ## COG: SMb20662 COG1028 # Protein_GI_number: 16265117 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Sinorhizobium meliloti # 3 247 11 258 258 217 49.0 2e-56 MTKIALVTGGSKGIGFAAAKALYEMGYTVVVAARNEETLQHCAQGLSPERFVPMVADVAS EAAVQALFAAIKERFGRLDLLFNNAGNNSPAKTIEEISFEEWSRVFSVNVHSTFLCAKEA IKIMKAQSPMGGRIINNASISAMTPRLYTAPYTASKHAVTGLTKAISLDCRQFNIACGQI NIGNAETTLSSRMRKGVYQADGSIKTEDIMNVDDVAAAIKMMAQLPVTTNVLEITIMANT MPYVGRG >gi|283548478|gb|GG730299.1| GENE 1128 1222318 - 1223076 558 252 aa, chain + ## HITS:1 COG:ECs2126 KEGG:ns NR:ns ## COG: ECs2126 COG4106 # Protein_GI_number: 15831380 # Func_class: R General function prediction only # Function: Trans-aconitate methyltransferase # Organism: Escherichia coli O157:H7 # 1 250 1 250 252 406 76.0 1e-113 MADWNPSLYLQYGNERSRPAAELLGRVALENVRTAVDLGCGPGNSTALLHKRWPSAKVTG VDSSPNMLNEARKALPNCQFLEADIRSFQTEQPVDLLYANASLQWIPDHYDLFPYLVSLL GSNGVLAVQMPDNWLEPTHVLMREVAYEQGYPDRGRSPLPGVHAYYDILTDAGCDVDIWR TTYYHIMNSHQSIIDWVSSTGLRPWLQDLSENEQHHYLARYHELLQEQYPLQENGKILLA FPRLFIVARREV >gi|283548478|gb|GG730299.1| GENE 1129 1223207 - 1223566 169 119 aa, chain + ## HITS:1 COG:mlr0112 KEGG:ns NR:ns ## COG: mlr0112 COG3791 # Protein_GI_number: 13470413 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 7 117 6 115 132 68 35.0 3e-12 MSKVYIGGCLCGSIRFAAKSPNNSHTCSCDICQKHTGAPTVVWIEFNAENVTWTAGKPTT WRSSDASSRAFCPQCGSSIGAIDDAPVIALLAGTFDDPNDEDLAPEFHAFSDMKPAWWP >gi|283548478|gb|GG730299.1| GENE 1130 1223585 - 1224025 278 146 aa, chain - ## HITS:1 COG:AGc449 KEGG:ns NR:ns ## COG: AGc449 COG0454 # Protein_GI_number: 15887612 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 145 1 146 147 125 45.0 2e-29 MALIVRELREDDYVQWRPLWDGYLAFLGCELDESVTASTWQRTLTAGSGLFCRVAVLDER IIGFALCILHPGTWSTAPICYLEDLFVEAGQRGCGAGKALINALQEEGKRAGWSKLYWVT RTDNPARKLYDQFCQADDYVRYRMSI >gi|283548478|gb|GG730299.1| GENE 1131 1224054 - 1224968 796 304 aa, chain - ## HITS:1 COG:STM1527 KEGG:ns NR:ns ## COG: STM1527 COG3781 # Protein_GI_number: 16764872 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 304 12 315 315 542 89.0 1e-154 MIVRPQQHWLRLIFVWHGSVLSKIFSRLLLNFLLSIAVIIMLPWYTMLGIKFTLAPFSIL GVAIAIFLGFRNNACYSRYVEARHLWGQLMIASRSLLREVKTTLPDDVELGQFVRLQIAF AHCLRMTLRRHPQAEPLAKYLNEADLQAVFASQSPANRILLLMGEWLAVRRRSGQLSDIL FHSLNNRLNDMSAVLAGCERIANTPVPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI SVLISYTFISLDALAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDETNVPAKHMPDKH YQLT >gi|283548478|gb|GG730299.1| GENE 1132 1225177 - 1226628 1624 483 aa, chain - ## HITS:1 COG:ECs2128 KEGG:ns NR:ns ## COG: ECs2128 COG0246 # Protein_GI_number: 15831382 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 483 1 483 483 920 91.0 0 MQTLNRRDFPGAHYPERIIQFGEGNFLRAFVDWQVDLLNEHTDLNAGVVVVRPIESTFPP SLSTQDGLYTTIIRGLNEKGEAVSDARLIRSVNREISVYREYDEFLKLAHNPDMRFVFSN TTEAGISYHAGDKFEDAPAVSYPAKLTRLLFERFSHFKGAADKGWIIIPCELIDYNGDAL RELVLRYAQEWALPEAFIQWLDQANAFCSTLVDRIVTGYPRDEVAKLEAELGYHDAFLDT AEHFYLFVIQGPKSLAAELRLDKYPLNVLIVDDIKPYKERKVAILNGAHTALVPVAWQAG LDTVGEAMNDAEICAFVEKAIYEEIIPVLDLPRDELASFASAVTGRFCNPYIKHQLLSIA LNGMTKFRTRILPQLLAGQQASGKLPARLTFALAALIAFYRAERNGESYPVQDDAHWMTR FQQLWAQHRDRQISTEALVRTVLGVKEHWEQDLTQVSGLVEQVTADLDAILTQGMREAVK PLC >gi|283548478|gb|GG730299.1| GENE 1133 1226735 - 1227250 268 171 aa, chain - ## HITS:1 COG:PA1885 KEGG:ns NR:ns ## COG: PA1885 COG0454 # Protein_GI_number: 15597082 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pseudomonas aeruginosa # 10 171 9 173 177 191 58.0 7e-49 MASCKPCFVLSAAQILSRIDEFSDVLEQCVNDGASVSFMLPFNRDKSQPFWMNVAQSVAR GERIVLAAENAEGALVGTVQLVIDQPENQPHRADVAKLLVHTSARRSGVARALMNELESC ARQQGKTLLVLDTATGSGAELFYHNCGWQKAGVIPDYAQMPDGTTLFYKTL >gi|283548478|gb|GG730299.1| GENE 1134 1227331 - 1227690 84 119 aa, chain - ## HITS:1 COG:no KEGG:G2583_1888 NR:ns ## KEGG: G2583_1888 # Name: yneG # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 119 1 119 119 220 86.0 1e-56 MNSLDPLFARLAKSTFRSRFRLGQKERQYCLDKGAPVIEQHAADFIAKRLAPAFPANDGK QTPMRGHPVFIAQHATATCCRGCLAKWHDISQGVALNEQQQRYVVTVIYHWLVMQMNKP >gi|283548478|gb|GG730299.1| GENE 1135 1227690 - 1228616 840 308 aa, chain - ## HITS:1 COG:STM1525 KEGG:ns NR:ns ## COG: STM1525 COG2066 # Protein_GI_number: 16764870 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Salmonella typhimurium LT2 # 1 308 1 308 308 582 94.0 1e-166 MARAMDNSILETIVQQVRPLIGQGKVADYIPALASVDGSKLGIAICTVDGQHYQAGDAQE RFSIQSISKVLSLVVAMRHYQEEEIWQRVGKDPSGHPFNSLVQLEMEQGIPRNPFINAGA LVVCDMLQGRLSAPRQRMLEVVRALSGVPDIAYDATVARSEFEHSARNAAIAWLMKSFGN FNHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGHAFHLAEPVVTSMQARQINALMAT SGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAIAVWSPELDPAGNSLAGIAALEQLT QQMGRSVY >gi|283548478|gb|GG730299.1| GENE 1136 1228791 - 1230179 1407 462 aa, chain - ## HITS:1 COG:STM1524 KEGG:ns NR:ns ## COG: STM1524 COG1012 # Protein_GI_number: 16764869 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 462 1 462 462 746 84.0 0 MTITAATHAISVDPTSGERLTAMPWASAEEIAQALSLAASGYSEWKQTTVAHRALTLRHI GQALRNRAEEMAQCISREMGKPIKQARGEVAKSAALCDWYAEHGPGMLNPEPTLVENNQA VIEYRPVGTILAIMPWNFPLWQVMRGAIPILLAGNGYLLKHAPNVTGCAAIIAQVFADAD VPAGVYGWVNADNAGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDP FIVLNDADLDLAVKAAVAGRYQNTGQVCAAAKRFIIEEGIAAEFTARFVAAASALKMGDP LDEENDLGPMARFDLRDELHQQVEASLAEGARLLLGGEKISGPGNYYAVTVLGGVTPEMT AFRQELFGPVAAITVAKNAEHALALANDSDFGLSATVFTSDETLAQKMASRLECGGVFIN GYSASDARVAFGGVKKSGFGRELSHFGLHEFCNVQTVWKNRL >gi|283548478|gb|GG730299.1| GENE 1137 1230282 - 1231157 675 291 aa, chain + ## HITS:1 COG:STM1523 KEGG:ns NR:ns ## COG: STM1523 COG0583 # Protein_GI_number: 16764868 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 286 1 286 290 509 86.0 1e-144 MDLTQLEMFNAVAETGSITQAAAKVHRVPSNLTTRIRQLEADLGVDLFIRENQRLRLSPS GHNFLRYSQRILALVEEARMVVAGDEPQGLLSLGSLESTAAVRIPATLAEYNQRYPKIQF ALATGPSGTMLDGVLDGALNAAFVDGPITHPGLEGIPVYREEMMIVTPHGHPPIQRASDV NGCSIYAFRANCSYRRHFESWFHADRAMPGTIHEMESYHGMLACVIAGAGIALIPRSMLE SMPGHHQINAWPLSENWRWLNTWLVWRRGAMTRQLEAFIEVLNPQLPEDTD >gi|283548478|gb|GG730299.1| GENE 1138 1231154 - 1231885 709 243 aa, chain - ## HITS:1 COG:STM0164 KEGG:ns NR:ns ## COG: STM0164 COG1349 # Protein_GI_number: 16763554 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 3 241 13 251 255 326 68.0 2e-89 MDYLKGHNLATVEQLVAVTDASPATIRRDLIKLDQEGVISRTHGGVTLNRFIPSQPTTHE KMQRSLQEKQAIASAAAGLVKAGDAIVLDAGTTMIELARQLTHLPLRVITSDLHIALFFS EFKQIEVTIIGGRIDDSSQSCIGEHGRKLLQNVWPDIAFLSCNGWDLARGITAPTEEKAG VKRDLIANASRRVLLADSSKYGAWSLFNVTHLHALTDIVTDARLNEDVRVQLEQLPCQLT IAS >gi|283548478|gb|GG730299.1| GENE 1139 1231917 - 1232903 456 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 2 325 6 326 346 180 33 3e-43 MNNVIAVTMGDPAGIGPEIIIKSLTEGALSGAPVVVVGCAQTLRRIQALNITPAAELRVI DRVAQAQFSAGVINVIDEPLADPDALEPGVVQAQAGDLAYRCIKRATALALNGEVKAIAT APLNKEALHLAGHPYPGHTELLAQLTNSKDYAMVLYTDQLKVIHVTTHIALRKFLDTLSE ARVKTVIQVAHDFLRRVGYENPRIAVAGVNPHAGEHGLFGDEEIKIVGPAIQAMQAQGLN VTGPCPPDTVFMQCHEGMYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGT AFDIAWTGKAKSESMAVSIQLAMQITRD >gi|283548478|gb|GG730299.1| GENE 1140 1232896 - 1234140 936 414 aa, chain - ## HITS:1 COG:STM0162 KEGG:ns NR:ns ## COG: STM0162 COG3395 # Protein_GI_number: 16763552 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 9 410 2 418 423 251 42.0 2e-66 MSKHVANPKILVIADDFTGGNDAGVSLALTGMTVNVAFTLPCAEETDVLIVNSDSRALDA PQAAARVNTLALACHADPRALWLKKMDSTLRGNPGAEVEALMQVTGKNLAIVAPAYPQAG RTTEQGLCLVNGVPVTETEFASDPKTPVASADICAVLQAQTSIKCRAMSLSDGLQRLQEP TADTPQIWVVDAQSNADLDAIVGEAMKRNDSPLLVGSAGICDALARRVQAVSARRLLAIV GSMSEIAQRQIAAVSRDPQVETVFIDIEDMFRGAMGGYVARIIGVLASGKHCIVHTCPDN EARHHIPHLCERWQVSRAQLGEKICQFLGQLTRQVLDDVSPAALYLSGGDVAMAVAEALE ATGFRITDRVAQCVPYGHFAGGRWQRPVMTKAGGFGDETTLRQVLHAIEEKMSE >gi|283548478|gb|GG730299.1| GENE 1141 1234309 - 1235241 532 310 aa, chain + ## HITS:1 COG:AGpA199 KEGG:ns NR:ns ## COG: AGpA199 COG1454 # Protein_GI_number: 16119364 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 265 37 287 399 140 38.0 2e-33 MATINSTVISGSHAIPALEPLLSGKRQLLLVTDGNIVRLDAVAQIRTLLANDGRQVTLID NVPAEPGHHDVSALVKRVADLNVEMVIGIGGGSVLDVAKLLSVLCHPGSPSLEAMLAGEK PQQRVACVLIPATAGTGSEATPNAILAIPEQHTKTGIISPVLLPDYVALLPELTTSMPAH IASSTGIDALCHLIECFTATIANPVSDNAALIGLQKLLKNIETSVNEPNNLLAKLEMLWA SYYGGVAINHAGTHLVHALSYPLGGAVSSASRRCQCDFVGALHAGGSPFCRRQVRPGLGS GTGCRSHPER >gi|283548478|gb|GG730299.1| GENE 1142 1235156 - 1235467 237 103 aa, chain + ## HITS:1 COG:no KEGG:Kvar_2706 NR:ns ## KEGG: Kvar_2706 # Name: not_defined # Def: iron-containing alcohol dehydrogenase # Organism: K.variicola # Pathway: not_defined # 1 98 283 380 382 149 76.0 3e-35 MRVVRPFAVDKFAQVWDLVPDADLTLNAEEKSHALVAWFSALVKRLNLPDNLATLGVPSA DIPALADAALNVKRLMNNAPCQVSHDDVQAIYQTLFPDPITKE >gi|283548478|gb|GG730299.1| GENE 1143 1235471 - 1236355 782 294 aa, chain + ## HITS:1 COG:AGpA90 KEGG:ns NR:ns ## COG: AGpA90 COG0329 # Protein_GI_number: 16119295 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 292 4 291 298 248 43.0 7e-66 MNSKIRGVLTAIVTPFDHDGGLNLGELKNQVNRQLRAGNGIFCGGTNGEFFVLNEEEKIA VTRTCVEEVAGRAHVVAHIGEISTRDTIRLGKKVEKLGVDAVSVITPYFVPLKQHELIAH YTAIADALTVPVFLYNIPARTGNTIEPATARTLAAHPNIIGIKDSAGSYESLSGFLDAVK DIDGFDVLNGPDSLIHQGFVDGCSACISGLANVAPDEINAIWSRFNAGDVAGSHQAQESV TGLRTDLYKVAFSPAAVKKALQIMGHDVGASRYAVTFNEQQEIQIQQIINNYLR >gi|283548478|gb|GG730299.1| GENE 1144 1236403 - 1237353 707 316 aa, chain + ## HITS:1 COG:MK0297 KEGG:ns NR:ns ## COG: MK0297 COG0111 # Protein_GI_number: 20093737 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Methanopyrus kandleri AV19 # 15 314 12 313 522 208 40.0 1e-53 MNVICTSPSFAKYDQQPIAQLKEVGLELIMLPADAGLEALEPHLKETVAMIVAFTDVNAE LLAAAPNLKIVCKHGVGVDNIDLNATREKGIYVTNVPDANKHAVADFAFSLILNCARQLP QAIEQTRAGRWPRIFASDVYGKTIGIIGLGNIGKQVALRARGFNMRVLAYDAWQDAQFAK ENRVEYVSLDELTEQSDFITLHTPLTPETKDLFDFARMNKMKPSSYLINVSRGGVVNEED LLQALTEGVIKGAAADVFLDEPCDSHPLFALDNFIPTAHIAGYTEGAISNIGEQCVHNII EYVIHQHKPKNIMNEL >gi|283548478|gb|GG730299.1| GENE 1145 1237419 - 1238738 911 439 aa, chain + ## HITS:1 COG:RSp1614 KEGG:ns NR:ns ## COG: RSp1614 COG0477 # Protein_GI_number: 17549833 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 5 423 8 425 448 531 64.0 1e-150 MNDFAEKSRIRWWIAGLMWLAIAINYIDRTVLSAAAPHLIDELKLDPEMMGFIMAAFFWS YSLLQIPAGWFADRFGQKKGLGFAVAWWSIATSMMGLATGFKSLLALRLALGVGEAAAYP SNAGIAARWFPDSERATVSGLFDSASKFGGAVAMPLIVWMIYQFDWRMTFLIIGSVGIIW VIAWYFIYTENPEDHKKISTSEVKHIREGQKQKHGDKSVLPMRWYKLLRYRNIWAMCIGF FTINYTSYFFITWLPTYLVKDKGMDFIKMGMVAALPLLCGMVIEVIAGWASDRMVHKRIL SLTATRKLFLTIGLLMALCIGFAPFTDSVYMTVFLLCVAKSGTTVAASQVWALPGDVAPK NSVSIVAGLQNTVSNMGGAVGPIITGAIVAATGSFTWALVFSAALVVVGILNYLFLMGKV EPIIDSEHEALCMKEAQQH >gi|283548478|gb|GG730299.1| GENE 1146 1238922 - 1240118 1266 398 aa, chain + ## HITS:1 COG:STM1522 KEGG:ns NR:ns ## COG: STM1522 COG2814 # Protein_GI_number: 16764867 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 1 396 1 396 396 564 89.0 1e-160 MTTNTVSRKVAWLRVVTLAIAGFIFNTTEFVPVGLLSDIAQSFNMQTAQVGIMLTIYAWV VALMSLPFMLLTSQMERRKLLICLFVVFIASHMLSFLAWNFTVLVISRIGIAFAHAIFWS ITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRIVGQYFGWRTTFFAIGIGALVT LLCLMKLLPKLPSEHSGSLKSLPVLFHRPALMSLYLLTVIVVTAHYTAYSYIEPFVQAVA GLSANFATVLLLVLGGAGIVGSVIFGKLGNLHASMLISSAIALLTVCLVLLLPAADSEMH LAILSIFWGIAIMLIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHW SMSTIGYTGAIPAVVALIWSVIIFRKWPVSLEEQPQHS >gi|283548478|gb|GG730299.1| GENE 1147 1240155 - 1240820 653 221 aa, chain - ## HITS:1 COG:STM1521 KEGG:ns NR:ns ## COG: STM1521 COG2095 # Protein_GI_number: 16764866 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Salmonella typhimurium LT2 # 1 220 1 220 221 362 96.0 1e-100 MMDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQSLMASVYVFAIMMVAYY AGQLVMNTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAHESPEAKSKSEELEDEPTANIA FVPLAMPSTAGPGTIAMIISSASTVRHGSQFPDWVIMVAPPIIFAVVGVILWGCLRSSGG IMRLVGKGGIEAISRLMGFLLVCMGVQFIINGVLEIIKTYA >gi|283548478|gb|GG730299.1| GENE 1148 1241078 - 1241512 303 144 aa, chain + ## HITS:1 COG:STM1520 KEGG:ns NR:ns ## COG: STM1520 COG1846 # Protein_GI_number: 16764865 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 144 1 144 144 254 91.0 4e-68 MKSTSDLFNEIIPLGRLIYMVNQKKDRLLNDYLSPLDITASQFKVLCSIRCAVCITPVEL KKVLSVDLGALTRMLDRLACKDWIERLPNPHDKRGVLVKLTEHGAAICEQCHQLVGQDLH QELTKNLTADEVATLEHLLKRILP >gi|283548478|gb|GG730299.1| GENE 1149 1241531 - 1241914 317 127 aa, chain + ## HITS:1 COG:STM1519 KEGG:ns NR:ns ## COG: STM1519 COG2207 # Protein_GI_number: 16764864 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 126 18 143 144 227 95.0 4e-60 MSRRNTDTITIHSILDWIENNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS RKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRTTNMHGESRYLL PLNQCNC >gi|283548478|gb|GG730299.1| GENE 1150 1241945 - 1242163 253 72 aa, chain + ## HITS:1 COG:no KEGG:CKO_01553 NR:ns ## KEGG: CKO_01553 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 8 72 1 65 65 103 81.0 3e-21 MKILSYAMLALLFAVSGQSMAEQTAQPATQNGRDAMIMPPAHEQSPFDFNHMGAGSDKSD ELGVPYYNTRKL >gi|283548478|gb|GG730299.1| GENE 1151 1242208 - 1242441 83 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085381|ref|ZP_06352911.2| ## NR: gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] # 1 77 9 85 85 144 100.0 3e-33 MDAGSAPTQQADGIRRIARVATIFPPGAWDAREAAASLARSRVSVLQRKDEHEVNGTLSL GWHIHYFRQHRLILPET >gi|283548478|gb|GG730299.1| GENE 1152 1242742 - 1243641 971 299 aa, chain - ## HITS:1 COG:ECs2140 KEGG:ns NR:ns ## COG: ECs2140 COG0697 # Protein_GI_number: 15831394 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 299 1 299 299 406 84.0 1e-113 MSRKDGLLALLVVVVWGLNFVVIKVGLHNMPPLLLAGLRFLLVAFPAIFFVTRPKIPLSL LLGYGLTISFGQFAFLFSAIKVGMPAGLASLVLQAQAFFTIILGAFTFGERLQGKQLVGI ALAVFGVLVLIEASLNGQHVGMLGFMLTLAAALSWACGNIFNKKIMQHTSRPAVMSLVVW SALIPIIPFFLASALLDGPAQIVQSLAAIDMTTILSLIYLAFVATIVGYGIWGSLLGRYE TWRVAPLSLLVPVVGLASAVVLLDETLTGLQLLGALLIMAGLYINVFGFRLRKTAQVRG >gi|283548478|gb|GG730299.1| GENE 1153 1243840 - 1245027 924 395 aa, chain + ## HITS:1 COG:STM1516 KEGG:ns NR:ns ## COG: STM1516 COG0477 # Protein_GI_number: 16764861 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 395 1 395 395 560 84.0 1e-159 MNISLRRSTLALLASSLLLTIGRGATLPFMTIYLSRQYNLSVDLIGYAMTVALTIGVVFS LGFGILADKFDKKRYMLLAICGFASGFIAIPLVHNVAVVVLLFALINCAYSVFATVLKAW FADNLSATNKTKIFSLNYTVLNIGWTVGPPLGTLLVMQSINLPFWLAAACSAFPLVFIQT WVKRSTATSEGSNAAVWTPSVLLRDRALCWFTLSAFLASFVGGAFASCISQYVMVVANGD FAEKVVAVVLPVNAAIVVSLQYALGRRITAANIRPLMTVGTIFFVLGLVGFMFSGNSLWF WGISAALFTIGEVIYAPGEYMLIDNIAPAGMKASYFSAQSLGWLGAAVNPLVSGVILTTL PPWSLFVALIVAIVLAWALMIKGMRAKPWNQTAVC >gi|283548478|gb|GG730299.1| GENE 1154 1245068 - 1245766 269 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 221 1 226 245 108 28 1e-21 MLQVNELNQYYGGSHILRGVSFEARIGEVTCLLGRNGVGKTTLLKCLMGLIPVRSGSVLW QEKNVTHWKPHHRVKAGVAYVPQGRDIFPRLTVEENLLLGLSRFSAQDARRVPDDIYALF PVLQEMKHRRGGDLSGGQQQQLAIGRALASRPQLLILDEPTEGIQPSVIKEIGQVISQLA HRGDMAILLVEQFYDFAEQLADKYLLMSRGSIIQSGSGENMASEGVRGLVAI >gi|283548478|gb|GG730299.1| GENE 1155 1245776 - 1246573 230 265 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 24 257 1 231 245 93 27 5e-17 MQPDEGLFTRQLPGDKFRNQTDPVLQLEKINVNFDGFQALTDLTLNIGVGELRCIIGPNG AGKTTLMDVITGKTRPQSGRAIYDQSIDLTTFDSIAIARQGIGRKFQKPTVFEALTVAEN LELALKNDKSVWGSLRARLSGEQRDRIDEMLALLRLGNDRDRRAGLLSHGQKQFLEIGML LVQEPHLLLLDEPAAGMTDAETEYTAELFRQLAGKHSLMVVEHDMGFVETIADHVTVLHQ GRVLAEGSLRDVQANEQVIEVYLGR >gi|283548478|gb|GG730299.1| GENE 1156 1246573 - 1247646 1339 357 aa, chain - ## HITS:1 COG:YPO1189 KEGG:ns NR:ns ## COG: YPO1189 COG4177 # Protein_GI_number: 16121484 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Yersinia pestis # 1 355 1 355 358 469 83.0 1e-132 MTMPMTLTLARKAPRVTRILGLFLLLALIILPFLALLPADHPLAISVWTLTLAGKILCYA IVAVALDLVWGYAGMLSLGHGIFFALGGYAMGMYLMRQASGEGLPAFMSFLSWTELPWFW WGTQHFIWAMLLVVLVPGLLALVFGWFAFRSKIKGVYFSIMTQALTFAGMLLFFRNETGF GGNNGFTGFTTILGFPVTATSTRIALFLATVMLLVLALWLGLALARSKFGRILTAVRDAE NRLMFCGYDPKGFKLLVWTLSAVLCGLAGALYVPQVGIINPSEMSPTNSIEAAIWVALGG RGTLIGPVFGAVLVNGAKSLFTVIMPEYWQLFLGLIFIGVTLFLPRGVIGLFRKGDK >gi|283548478|gb|GG730299.1| GENE 1157 1247646 - 1249220 1385 524 aa, chain - ## HITS:1 COG:YPO1188 KEGG:ns NR:ns ## COG: YPO1188 COG0559 # Protein_GI_number: 16121483 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Yersinia pestis # 21 524 30 533 533 583 71.0 1e-166 MKAMRFIRGVMLLTWFLPWIAQASDADTFTAANRAQQATLLEQWAMNPDQQRLPVLAALR SESLLADSAKHAFVMDGSRVQPLGTAAAPDGELKKVRLTNRLRNLVAGTLAAHQLLSDSV TIRAGAARTLQREAMPGMLPFLQQRLAQESDADVKSALVIALANLQLTSTSPEVRRQAIE LLGASNDPETQAKLQPFTRAEHEPDARVRAAADESLNSIAHRMKIGDLLGQAFMGLSLGS ILLLAALGLAITYGLLGVINMAHGEMLMLGAYCTWIVQQLMGQFFPHWLAWYPVIALPVA FLFTAAVGMLLERGVIRHLYGRPLETLLATWGISLMLIQLVRMTFGAQNLEVANPAWLSG GIQVYANLILPWNRIVVLGFATLVLFFTWLLLNKTRLGLRVRAVTQNRNMAACCGVPTGR VDMLAFGLGSGIAGLGGVALSQLGNVGPELGQSYIIDSFLVVVLGGVGQLAGSVAAAFGL GIFNKILEPQVGAVLGKIIILVLIILFIQKRPQGLFALKGRVID >gi|283548478|gb|GG730299.1| GENE 1158 1249264 - 1250535 1294 423 aa, chain - ## HITS:1 COG:YPO1187 KEGG:ns NR:ns ## COG: YPO1187 COG0683 # Protein_GI_number: 16121482 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Yersinia pestis # 1 421 1 421 422 744 85.0 0 MQRRTFLKAFALSASVVAMGMSFSVQAADTIKIGIMHSLSGTMAISETPLKDVALMTIDE INAQGGVLGKKLEPVVVDPASNWPLFAEKARQLLSQDKVAVVFGCWTSVSRKSVLPVFEE LNGLLFYPVQYEGEEMSPNVFYTGAAPNQQAIPAVEYLMSEDGGSAKRFYLLGTDYVYPR TTNKILRAFLHSKGVADKDIEEVYTPFGHSDYQTIVAGIKKFAAGGKTAVVSTINGDSNV PFYKELANQGLKATDVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFESVDNAANKKFVAD YRAYAKAHKLPNADSVVTNDPMEATWVGLHMWAQAVEKAGTTDVDKVRAAMAGQSFAAPS GFTLTMDATNHHLHKPVMIGEIEGNGQFNVVWQTDEPVRAQPWSPYIAGNDKKSEQPVKT ASN >gi|283548478|gb|GG730299.1| GENE 1159 1251024 - 1251119 88 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLGNMNIFMAVLGIILFSGFLAAYLSHKWDD >gi|283548478|gb|GG730299.1| GENE 1160 1251402 - 1252328 508 308 aa, chain - ## HITS:1 COG:ydeH_2 KEGG:ns NR:ns ## COG: ydeH_2 COG2199 # Protein_GI_number: 16129494 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli K12 # 121 296 1 176 176 250 67.0 3e-66 MMKNAMEIDAILIELNKSIDAHYKWLVKMFRCAVSSNDTQPDIMGDNAHVVCQFGQWLNN QLLRNEDDCRYVNKINTAHEKMHLSGKDLLTAILEERSYPWHFNKFEDALLAFTSAVMDY KIYLLSIRSNIDVLTGLPGRRMLDESFDQQLIDAEPLNLYILLLDIDRFKHVNDTYGHLV GDVVLRALASNFLAWTRYDEVAYRYGGEEFIIIIRTKTDEQARQAGLRLCQLVGQKKIPY ADGEIAITVTAGITRAQRDEKLDTALGRADRAMYQGKQSGRNRCMFMDEREQITLVNADD GLSFHLSA >gi|283548478|gb|GG730299.1| GENE 1161 1252498 - 1254543 1627 681 aa, chain - ## HITS:1 COG:STM1512 KEGG:ns NR:ns ## COG: STM1512 COG0339 # Protein_GI_number: 16764857 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Salmonella typhimurium LT2 # 4 679 3 678 680 1067 80.0 0 MSLTNPFLHHSTLPYQAPQFDQIDVQHYRPAFDEGVRQKRAEIEAIVHNPQVADFANTLL ALEQSGALLTRVTSVFFAMTAAHTNDELQRLDEAFSAELASLANDIYLNSALFARVDAVW QRRHSLGLDSESFHLLEVIHQRFVLAGARLNEADKARLKALNTESATLTSQFNQRLLAAN KSGALVVDDVRLLDGLSAEEIAVAAETAQEKGLAASWVIPLLNTTQQPALAALRDRQTRE SLFTRAWTRAENNDANDTRAIIQRLVDIRMQQAKLLGFANYAAWKIADQMAKTPDAALAF MRAIVPAARLRALDEQAEIQKVIVQEHGQFDAEAWDWAFYAEQVRREKYALDEAQLKPYF ALDTVLNEGVFWTASQLFGIKFIERFDIPVYHPDVRVWEIFDHDGVGLALFYGDFFARES KSGGAWMGNFVEQSELNETRPVIYNVCNYQKPATGKPALLLWDDVITLFHEFGHTLHGLF AAQRYATLSGTNTPRDFVEFPSQINEHWASHPQVFARFARHVDTGEPMPQALRDKMQQAS LFNKGYDMTELLSAALLDMRWHSLEMSASSHPVEQFEQQALAAEGLDLKAVPPRYRSSYF AHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLTRENGQKFREAILSRGNSTDLAELY RQWSGRDPRMEPMLEHRGLSA >gi|283548478|gb|GG730299.1| GENE 1162 1254681 - 1255427 901 248 aa, chain + ## HITS:1 COG:ECs2148 KEGG:ns NR:ns ## COG: ECs2148 COG4221 # Protein_GI_number: 15831402 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Escherichia coli O157:H7 # 1 247 1 247 248 457 89.0 1e-129 MIVLVTGATAGFGECITRRFIENGHKVIATGRRQERLQELKDELGDRLYTAQLDVRNRAS IEEMMDTLPAEWRNIDVLVNNAGLALGLEPAHKASIEDWENMIDTNNKGLVYMTRAVLPG MVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAIRVTDIEPGLV GGTEFSNVRFKGDDAKAEKAYENTTALTPQDVTEAVWWVASLPAHVNINTLEMMPVAQTF AGLSVHRG >gi|283548478|gb|GG730299.1| GENE 1163 1255514 - 1256200 686 228 aa, chain + ## HITS:1 COG:ECs2149 KEGG:ns NR:ns ## COG: ECs2149 COG1802 # Protein_GI_number: 15831403 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 228 1 228 228 376 86.0 1e-104 MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLA ENGLIQIRPQRGSYVNKISLSQVQNGCFVRQAIECAVVRRAASLITDKQCYQLEQNLHQQ RIAIDRKQLNDFFLLDDEFHQKLALIAECQLAWDTVENIKATIDRVRYMSLDHISPPEML LRQHHDIFAALEKRDGDAVERAMMLHLQEIGESVQLIRQENSDWFSED >gi|283548478|gb|GG730299.1| GENE 1164 1256390 - 1256593 304 67 aa, chain + ## HITS:1 COG:no KEGG:ROD_14861 NR:ns ## KEGG: ROD_14861 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 67 11 77 77 98 86.0 8e-20 MKTYDRNRNAITTGSRVMISGTGLTGRITAIDTDGLTAEQIRRGKTVEIEGCEGKYTPVE LIRLGMN >gi|283548478|gb|GG730299.1| GENE 1165 1256669 - 1258135 1663 488 aa, chain - ## HITS:1 COG:ECs2151 KEGG:ns NR:ns ## COG: ECs2151 COG0246 # Protein_GI_number: 15831405 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 486 1 486 486 828 83.0 0 MQNKLLTAKATLPGYDRTKLVPRIVHLGFGAFHRAHQGVYADILAADHGSDWGYCEVNLI GGEQQIADLKQQDYLYTVAEMSADAWTARVVGVVKNALHAQVDGLESVLAAMCEPQVAIV SLTITEKGYCHSPATGQLMLDNPMIAADLQNPKQPKTAPGVVVEALARRKAAGLAAFTVM SCDNMPENGHVMRNVVTAYARRVDAELAAWIEQHVTFPSTMVDRIVPAVTPETLNKIEHI TGVRDPAGVACEPFRQWVIEDNFVAGRPAWEKAGAELVSDVIPFEEMKLRMLNGSHSFLA YLGYLAGYQHINDCMEDENYRLSARALMLQEQAPTLKVKGVDLQHYADLLIERYSNPALR HRTWQIAMDGSQKLPQRMLDSVRWHLAHGSHFDLLALGIAGWMRYVGGVDEQGQAIEISD PLLPTIQNAVRNSQEGEERVQALLAIDAIFGCELPQVEPFKKQVTEAYLALLAEGAKATV AKYAAKLK >gi|283548478|gb|GG730299.1| GENE 1166 1258301 - 1259680 1094 459 aa, chain - ## HITS:1 COG:ydfJ KEGG:ns NR:ns ## COG: ydfJ COG0477 # Protein_GI_number: 16129502 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 29 444 1 412 427 662 84.0 0 MNQEKHERSTKDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAM GTYGAGYIARIVGAFIFGKMGDSIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVL LVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFA LDREELLAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKMNTEENAPALSNSSENTLGA MFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFDKSIPTDALMISSVLGFITIPL LGWLSDKFGRRLPYIILNVSAIILAYPMLSIVVDKTYSPGVIMTALIVIHNFAVLGLFAL ENITMAEMFGARNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTNSWWPILAMVIAYSLI GLVSALLMPEVKDRDLSVLEDAAEVSQTDKARCSATQTS >gi|283548478|gb|GG730299.1| GENE 1167 1259734 - 1260753 632 339 aa, chain - ## HITS:1 COG:STM1506 KEGG:ns NR:ns ## COG: STM1506 COG1063 # Protein_GI_number: 16764851 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 339 1 339 339 592 82.0 1e-169 MKSIVIEKPNTLIVAERPVPEPSAGEVRVKVKLAGICGSDSHIYRGHNPFAQYPRVIGHE FFGVIDAVGEGVDRSRMGERVSVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEY AVVPAKNAWPIPDAVPDEHAVMVEPFTIAANVTGQIKPTENDIALIYGAGPMGLTTVQAL KRVYKVKTVVIADRIEERLSMAQQCGADWAINNGQQSLHDFLAEKGLKPTIIVDAACHPS ILQEAITLASPAARIVLMGFSSEPCQIVQQGITGKELSIYSSRLNANKFPVVIDWLVNGL INPNQLITHTFDYHHVTDAIELFEKDQQHCCKVLLTFTE >gi|283548478|gb|GG730299.1| GENE 1168 1260767 - 1261981 1322 404 aa, chain - ## HITS:1 COG:rspA KEGG:ns NR:ns ## COG: rspA COG4948 # Protein_GI_number: 16129539 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Escherichia coli K12 # 1 404 1 404 404 840 95.0 0 MKIVGAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLKDHVCPQLIGRDA HRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVY CHTTGHTVDDVLEDYARHKEMGFKAIRVQCGVPGMKTTYGMSKGKGLAYEPATKGQWPEE QLWSTEKYLDFTPKLFAAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSIEQYRLFWMEDP TPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRI ADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFD NGYMHPGDKPGLGIEFDEKLAAKYPYDPAYLPVARLEDGTLWNW >gi|283548478|gb|GG730299.1| GENE 1169 1262089 - 1262415 242 108 aa, chain - ## HITS:1 COG:ynfA KEGG:ns NR:ns ## COG: ynfA COG1742 # Protein_GI_number: 16129540 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 108 1 108 108 149 87.0 1e-36 MLKTTFLFFITALCEIIGCFLPWLWLKRGATAWLLVPAGVSLALFVWLLTLHPAASGRVY AAYGGVYVVTALLWLRFVDGVKLSLYDWSGALVALCGMLIIVAGWGRT >gi|283548478|gb|GG730299.1| GENE 1170 1262568 - 1262909 436 113 aa, chain + ## HITS:1 COG:no KEGG:SARI_01439 NR:ns ## KEGG: SARI_01439 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 113 15 127 127 181 88.0 8e-45 MKITLTKRLCLTAMLTLAAAVYTSSAFAETSKLVIESGDSAQSRQQAAMEKEQWNDTRQL RQKVNKRAEKEWDKTDAAFDSRDKCEQSANLNAYWEPNTLRCLDRRTGRTVTP >gi|283548478|gb|GG730299.1| GENE 1171 1262945 - 1263505 463 186 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116512426|ref|YP_809642.1| spermidine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 1 175 4 178 212 182 48 5e-44 MTSALSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRF VVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLASRAAKLAMDYGFTVLNLYKL YLIVDKENEKAIHIYRKLGFMVEGELIHEFFINGQYRNTIRMCIFQQQYLAEHKTSGPNL LQPTAQ >gi|283548478|gb|GG730299.1| GENE 1172 1263512 - 1264258 912 248 aa, chain - ## HITS:1 COG:no KEGG:CKO_01579 NR:ns ## KEGG: CKO_01579 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 248 1 248 256 434 83.0 1e-120 MIENYLLIPVKNVKKQTLLVFLCVVLVGCDNAKGLISFTPEMASFSNEFDFDPLRGPVKD FSQTLLNDKGEVTKRVVGTLSQEGCFDTLELHDIENNTGMALVLDANYYRDAETLEKKIR LQGKCQLAELPAAGVVWDTDDNGFVVSATGKEMKVQYRYDTEGYPLGKTTVSKDNTLKVD AKPSVDPQKKLDYTAVSVLNNHPLGNVKQTCKYDEYANPVSCQLVIIDESVKPAVEHHYS IENTIDYY >gi|283548478|gb|GG730299.1| GENE 1173 1264329 - 1264634 252 101 aa, chain + ## HITS:1 COG:no KEGG:CKO_01580 NR:ns ## KEGG: CKO_01580 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 101 2 102 102 154 85.0 1e-36 MKYITGIAALLLVAASPQVLAAPASCERVKSDIEQRIINNGVAESSFTLNIVPNDQADQP DSLVVGHCANDTHKILYTRTNSGNAPANSTPAQDGHAAEPQ >gi|283548478|gb|GG730299.1| GENE 1174 1264793 - 1267231 1818 812 aa, chain + ## HITS:1 COG:STM1499 KEGG:ns NR:ns ## COG: STM1499 COG0243 # Protein_GI_number: 16764844 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 812 2 813 813 1489 87.0 0 MSDTEQYGGISRRTLVKSSAIGSLALAAGGLSLPFGMRTAAAAVQQVLQPAEEKVVWGAC SVNCGSRCALQLHVKDDEVVWVESDTTGDDIYGQHQVRACLRGRSIRRRINHPDRLNYPM KRVGRRGEGKFERITWQEALDTISASLKNTVQKYGNEAVYINYTSGVVGGNITRSSPYAS LVARLMNCYGGFLSHYGTYSTAQIAAAMPYTYGSNDGNSTSDIENTKLVVMFGNNPAETR MSGGGITYFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLIN EDLVDQTFLDTYCVGYDEKTLPNDAPANGHYKAYILGNGDDGIAKTPQWASHITGIPAER IIKLAREIGSTKPAYICQGWGPQRQANGELTSRAIAMLPILTGNVGINGGNSGARESTYT ITIERMPLPDNPIKTQISCFSWTDAIARGPEMTATRDGVRGKDKLDVPIKFIWNYAGNTI TNQHSDINKTHEILQDDTKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGN MGYLIFIQPATSAKFERKPIYWIMSEVAKRLGDDVYQRFTEGRTQEQWLQYLYAKMLAKD SALPSYDELKKMGIYKRKDPNGHFVAYRKFRDDPQANPLKTPSGKIEIYSSRLAKIASTW ELQNDEVISPLPIYASTFEGWDDPKRSAFPLQLFGFHYKSRTHSSYGNIDVLQAACRQEV WINPVDAQKRGIANGDMVRVFNDRGEVRIPAKVTPRIVPGVSAMGQGAWHDADMSGDRID HGACVNTLTTQRPSPLAKGNPQHTNLVEIEKV >gi|283548478|gb|GG730299.1| GENE 1175 1267242 - 1267859 562 205 aa, chain + ## HITS:1 COG:STM1497 KEGG:ns NR:ns ## COG: STM1497 COG0437 # Protein_GI_number: 16764842 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 1 205 1 205 205 400 95.0 1e-112 MTTQFGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAGGDWQEDNGVWHQNVFA YYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAAK GHMTKCDGCHDRVADGKKPICVESCPLRALDFGPIDELRKKHGQLAAVAPLPGAHFTKPS IVIKPNANSRPTGDTTGFLANPKEV >gi|283548478|gb|GG730299.1| GENE 1176 1267861 - 1268715 915 284 aa, chain + ## HITS:1 COG:STM1496 KEGG:ns NR:ns ## COG: STM1496 COG3302 # Protein_GI_number: 16764841 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Salmonella typhimurium LT2 # 1 284 1 285 285 372 77.0 1e-103 MGNGWHEWPLVLFTVLGQCVAGALIVSGYGWLTAQDNVAKQRIVRSMFFLWLVMGIAFLA SVMHLGSPLRAFNSLNRIGASALSNEIASGSLFFAVGGLWWLVAFLGKMPAALGKIWLLV AMLLGVVFVLAMTNVYQIDTVPTWYNGYTTLAFFMTMLLSGPLFAALLLRAASVSFNAAR FTGIGVLALLVTVAVIVLQGVSLGDIHSSVQNASALVPDYGSLQVWRIVLLAAGLGCWIC PIIRRKQPSVGGLALGLILVLGGEIIGRGLFYGLHMTVGMAVAG >gi|283548478|gb|GG730299.1| GENE 1177 1268757 - 1269371 716 204 aa, chain + ## HITS:1 COG:ECs2297 KEGG:ns NR:ns ## COG: ECs2297 COG3381 # Protein_GI_number: 15831551 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli O157:H7 # 1 204 4 207 207 300 77.0 1e-81 MTHFSQRDNFSTAARVLGALFYYAPDSAEASALVSALKTDGWQAQWPLDPTTLAALAAQL QTEADESLPQAWQRLFVGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRDNGIQFAMQ QNEPEDHFGALLLLTAWLAENGRHAECEQLLAWHLLPWSTRFLDVLIEHADHPFYQALAE LARLTLAQWRSQLLIPVTDKPLFR >gi|283548478|gb|GG730299.1| GENE 1178 1269491 - 1270780 1031 429 aa, chain + ## HITS:1 COG:STM1490 KEGG:ns NR:ns ## COG: STM1490 COG0038 # Protein_GI_number: 16764835 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Salmonella typhimurium LT2 # 1 429 1 429 429 598 86.0 1e-171 MHHLHTYPDLRAMLRRLLIAALIGILAALAVAGFRHAMLFLEWLFLSNNTGSLVNAATNL SPLRRVLTPALGGLAAGLLLWGWQKFNRLRPQAPTDYMEALQTDGQFDVGASLVKSLASL LVVASGSAIGREGAMILLAALAASCFAKRFTPRAEWKLWIACGAAAGMTGAYHAPLAGSL FIAEVLFGTLILASLGPVVVSAVVALLTTNVLNDSNALLYTVHFTRELHALEYVMIISTG LAAGVCGPLFMWLMTTSHNGFLRLKLAPPWQLALGGLIVGLLSLLTPAVWGNGYSVVQSY LLSPPLLSVVSGILICKLVAVLASSGSGAPGGVFTPTLFVGLSVGMLLGRVWGFWLPGPD EVAILLGLTGMATLLAATTHAPIMSTLMVCEMTGEYRLLPGLLIACVVASVLSRTLRHDS IYRQHATEH >gi|283548478|gb|GG730299.1| GENE 1179 1270736 - 1271431 749 231 aa, chain - ## HITS:1 COG:STM1489 KEGG:ns NR:ns ## COG: STM1489 COG0132 # Protein_GI_number: 16764834 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Salmonella typhimurium LT2 # 1 231 1 231 231 416 93.0 1e-116 MLKRFFITGTDTSVGKTVVSRALLQALASGGKSVAGYKPVAKGSKETPEGLRNKDALVLQ SVSSIELPYQAVNPIALSEDESSVAHSGPINYTLLSNGLASLSEKVDHVVVEGTGGWRSL MNDLRPLSEWVVQEQLPVLMVVGIQEGCINHAILTAQAIASDGLPLIGWVANRINPGLAH YAEIIDVLGKKLPAPLIGELPYLPRAEQRELSQYIRLSMLGGVLSVDRVMA >gi|283548478|gb|GG730299.1| GENE 1180 1271557 - 1272777 279 406 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 146 394 63 317 323 112 28 1e-22 MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV QELEIKEAGSRGRPAVGLVVETEAWHYLSIRISRGEIFLALRDLSSKLVVEDCLEMPLVS ETPLLERVITQVDQFFIRHQQKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE ALENHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSVLELAQVRLKQSMSSSLHGQPLTVDAL CLAAMQGDLLAKDIISGVGTHVGRILAIMVNLFNPQKILIGSPLSKAADILFPTIADSIR QQALPAYSQHIVVESTQFTNQGTMAGAALVKDAMYNGSLLIRLLQG >gi|283548478|gb|GG730299.1| GENE 1181 1272896 - 1273804 217 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 3 245 1 239 305 88 27 2e-15 MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQIGARLLARTNRSVALT AAGKQFLADSRQILGLVNEAAARAERLHLGEAGELRIGFTSSAPFIKAVSDTLSLFRQRY PAVHMQTREMNTREQIAPLNEGTLDMGLLRNTQLPETLEREVILHEPLMAMIPRAHPLAQ KPVVTLAELANEPFVFFDPHVGTGLYDDILGLMRRYNLKPTIAQEVGEAMTIIGLVAAGL GVSILPASFKRVQLYEMCWIPIAEEDAVSEMWLVWPKHHEQSHAAQRFREQLLAAVQAIN LV >gi|283548478|gb|GG730299.1| GENE 1182 1273912 - 1275162 1183 416 aa, chain + ## HITS:1 COG:ECs2302 KEGG:ns NR:ns ## COG: ECs2302 COG0477 # Protein_GI_number: 15831556 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 415 1 416 417 669 92.0 0 MSRTTTVDTAPASDIDESVTPPEGFIKRGTSPFMRVTLALFSAGLATFALLYCVQPILPV LSHEFGVSPASSSVSLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASCCTLLSTMM TSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISG VFTDFFSWRIALAAIGCFALASALMFWKILPESRHFRPTSLRPKSLFINFRLHWRDKGLQ LLFAEGFLLMGSFVTLFNYIGYRLMLSPWELSQAVVGLLSVAYLTGTWSSPKAGSMTTRY GRGPVMLFSTGVMLVGLLMTLFTSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQ ASSLYLFSYYLGSSIAGTLGGVFWHSYGWNGVGGFIALMLVLALLVGARLHHRLHV >gi|283548478|gb|GG730299.1| GENE 1183 1275194 - 1275871 410 225 aa, chain - ## HITS:1 COG:YPO0983 KEGG:ns NR:ns ## COG: YPO0983 COG1266 # Protein_GI_number: 16121287 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Yersinia pestis # 7 217 2 210 216 82 31.0 8e-16 MSQDVDNQYIARTNAVAGCFSMFLLMFGLTFTPLFFPASQVLLAKGLLFPLLFMLEFVVL VPLYYFFFRKRDGLGKGIFSVRRFTFLFVGLLIIQLILPWFLGLRQTEAWVTSQVSLNSY ALWLSTLTLVFIAPVYEEIVFRGCLFNAFQYWFNNKTWLSSVVVSVIFAVMHTQYVDLRT LLMLFLVSQVLILARLKSNGLLMPITLHIAMNGTVIALQMAAQTL >gi|283548478|gb|GG730299.1| GENE 1184 1275964 - 1277436 985 490 aa, chain - ## HITS:1 COG:lin2727 KEGG:ns NR:ns ## COG: lin2727 COG0642 # Protein_GI_number: 16801788 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Listeria innocua # 183 485 176 457 459 125 26.0 3e-28 MIYRLSLSQRLTLVFTAIMLICAVAVSVVQLRNSQIYGDAMVQRLSMELASKIVKSEPLI DAGGEVNRQTLKGLFNHLMTLNPSVELYLISPTGDILADAAPPGHIQRQKITLQPIQRFL NSDALPVYGDDPRSNQQKVFSAAPVLLNGQLHGYLYIILQGENLHMLANTAWQKTLWNTV AGTLILVLLAGGIAGFLVWRWVTHPVKRLTGQVVKMEQDSISVIKLLAQKKPDPSPGNEI ALLNNAFIELAQHIAQQWDLLADSDRQRREFIANISHDLRTPLTSLLGYLEMLSLKADTI TPEENRHYLSIALRQGQKVRHLSQQLFELARLEHGGIKPQRERFAIGELIQDVAQKFDLP VATRHLQLHLDVTGPLPLVNADLSMMERVVTNLLDNAIRHTPDGGEVWLKVWRDEERLLA EVQDSGPGVEEGVRDELFQRPTALTPREQRGGLGLLIVRRMLELHGGDIHLVNSTPGACF RFSLPLADSP >gi|283548478|gb|GG730299.1| GENE 1185 1277433 - 1278155 765 240 aa, chain - ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 5 231 12 240 247 213 48.0 2e-55 MAGAKKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPG VDGLEICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALF RRQEAMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFS RQALLDQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKLAAAHAEPQS >gi|283548478|gb|GG730299.1| GENE 1186 1278344 - 1279348 659 334 aa, chain + ## HITS:1 COG:ECs2709 KEGG:ns NR:ns ## COG: ECs2709 COG2041 # Protein_GI_number: 15831963 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 591 85.0 1e-169 MQKKRPLREADVTAESVFFMQRRQILKALGIGAAAASLTSPTQANLLNWFKGNDRPPASA GKPLEFIKPEAWQSTLPLTPEDKVTGYNNFYEFGLDKADPAANAGSLRTDPWTLTIDGEV SKPLTLDHDALTTRFPLEERIYRMRCVEAWSMVVPWVGFPLHKLLALVEPTGHAKYVAFE TRYAPDEMPGQKDRFIGGGLKYPYVEGLRLDEAMHPLTLLTVGVYGKALPPQNGAPIRLT VPWKYGFKGIKSIVSIKLTRERPPTTWNRSAPNEYGFYANVNPHVDHPRWSQATERFIGS GGILDVQRQPTLLFNGYADEVASLYRGMDLRENF >gi|283548478|gb|GG730299.1| GENE 1187 1279349 - 1279975 439 208 aa, chain + ## HITS:1 COG:yedZ KEGG:ns NR:ns ## COG: yedZ COG2717 # Protein_GI_number: 16129918 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 196 1 196 211 257 75.0 9e-69 MRLTAKRITWLKALLHLAGFLPLVWLVWAVRHGELGADPGKDIQHFTGITALKFLLAALL VSPLARYAKQPLLFRTRRLLGLWCFAWATLHLTSYALLELGMQNLGLLGRELVARPWLTL GMMGWVILLLLTLTSTQAAQRKMGQRWQKLHNYVYLAAVLLPIHYLWSVKVLSPSPIIYA FCSVGLLALRYKKFLSKVRYKGVFMKSE >gi|283548478|gb|GG730299.1| GENE 1188 1280023 - 1281510 1352 495 aa, chain + ## HITS:1 COG:YPO2310 KEGG:ns NR:ns ## COG: YPO2310 COG2317 # Protein_GI_number: 16122534 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent carboxypeptidase # Organism: Yersinia pestis # 7 495 5 499 499 677 66.0 0 MSNSDNYHQLTRTFQRLSRFSHLSAIASWDMFTMMPPGGSKARGEALAELSVLEHQLLTD PKVAMWIAAAKQEDLNDVEQANLREMSRLHHQASLLPESLVEAKSLAGSRCEHAWRSQRP ANDWEGFAVNLKEVVKYSREEARLRAEAKGCSPYDALLDIFEPEMTSAQLDVLFADVKSW LPDLLTNVVAKQAQQTLIAPVGPFPTAVQRELGLETMAQLGFDFSAGRLDISAHPFCGGV PEDVRITTRYDENELLSALFGVIHETGHARYEQNLPRNWSGQPIALARSTAIHESQSLFF EMQLGRSKAFLTRLIPAVTRYFGNQAAFEESNFIAWNQRVKPGFIRVDADEVSYPAHVIL RYEIERALINGDIEVEDIPALWNEKMQEWLGLSTIGNYRNGCMQDIHWTDGGFGYFPSYT LGAMYAAQLFSAAQRALPDLNQSIEQGEFSALFDWLRQNIWQHGSRFTTEQLITQATGEP LSSRYFRAHLEARYL >gi|283548478|gb|GG730299.1| GENE 1189 1281648 - 1282037 338 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085391|ref|ZP_06352950.2| ## NR: gi|291085391|ref|ZP_06352950.2| acid shock protein [Citrobacter youngae ATCC 29220] acid shock protein [Citrobacter youngae ATCC 29220] # 1 129 10 138 138 81 100.0 2e-14 MKKVLALVVAAAMGLSSAAFAAETTTTTAPTTTTKAAPAKTTHHKKQHKAAPQKAQAAKK HTKQSTTKPAVEQKAPEQKAQAAKKHTKKAATKPAAEQKAPEQKAQAAKKQTKKPVKHDS AKPAAQPAA >gi|283548478|gb|GG730299.1| GENE 1190 1282308 - 1283129 570 273 aa, chain + ## HITS:1 COG:STM1484 KEGG:ns NR:ns ## COG: STM1484 COG3591 # Protein_GI_number: 16764829 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Salmonella typhimurium LT2 # 1 272 1 272 273 452 84.0 1e-127 MHKTIAVLLGSICLTPVVAHAEQPATSSAEAENIKTLFFGHDDRIKVTDPTQSPWDAIGQ LETASGNLCTATLISPHLALTAGHCLLTPPKGKPDKAVALRFVSKKGVWRYEIHGIEGRV ASSLGKRLKADGDGWIVPPSAAPWDFGLVVLRYPPSGITPLPLFEGDKAALTTALKTADR KVTQSGYPEDHLDDLYTHQDCVVTGWAQNSVLSHQCDTLPGDSGSPLMLKTDSGWQLIGV QSSAPAAKDRWRADNRAISVTGFRDKLEALAKG >gi|283548478|gb|GG730299.1| GENE 1191 1283164 - 1283493 565 109 aa, chain - ## HITS:1 COG:STM1483 KEGG:ns NR:ns ## COG: STM1483 COG2076 # Protein_GI_number: 16764828 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Salmonella typhimurium LT2 # 1 109 1 109 109 150 88.0 4e-37 MQQFEWVHGAWLGVAIVLEIVANVFLKFSDGFRRKAYGVLSLVAVLAAFSALSQAVKGID LSVAYALWGGFGIAATLAAGWVLFGQRLNNKGWIGVALLLAGMIMIKLA >gi|283548478|gb|GG730299.1| GENE 1192 1283480 - 1283842 350 120 aa, chain - ## HITS:1 COG:STM1482 KEGG:ns NR:ns ## COG: STM1482 COG2076 # Protein_GI_number: 16764827 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Salmonella typhimurium LT2 # 1 120 1 120 120 152 84.0 1e-37 MFYWILLGLAIAAEITGTLSMKWASVGHGNSGFILMLVMIALSYIFLSFAVKKIALGVAY ALWEGIGILFITLFSVLLFDETLSTMKVAGLVSLVLGIVLIKSGTRKPAKSGREVTHAAV >gi|283548478|gb|GG730299.1| GENE 1193 1284262 - 1285296 1117 344 aa, chain + ## HITS:1 COG:STM1481 KEGG:ns NR:ns ## COG: STM1481 COG0628 # Protein_GI_number: 16764826 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 1 343 1 343 344 476 94.0 1e-134 MAKPIITLNGLKIVIMLGMLVIILSGIRFAADIIVPFILALFIAVVLNPVVQRMVKLRIP RVLAVSLLIVIIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLKNLEPWLQRAGIGVS VDELVKYIDPNAAMTLVTNLLAQLSNAMSSIFLLLLTVVFMLLEVPQLPGKLQQMMSRPI EGMAAIQRAIDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLAFALNYIPNIG SVLAAIPPIAQVLVFSGLYDALVVLAGYLVINLVFGNILEPRIMGRGLGLSTLVVFLSLI FWGWLLGPVGMLLSVPLTIIVKIALEQTNGGQSIAVLLSDLNKA >gi|283548478|gb|GG730299.1| GENE 1194 1285328 - 1286524 969 398 aa, chain - ## HITS:1 COG:RSc0216 KEGG:ns NR:ns ## COG: RSc0216 COG0477 # Protein_GI_number: 17544935 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 9 383 3 381 409 288 46.0 1e-77 MRTREYASPVATASQTGLAFILILSGLMAFTSLSTDIYLPAMPTMATDLHGNVELTITGF LVGFTIAQLIWGPISDHLGRRKPLFIGMVLFIIGSAGCAMSTSITQIVFWRVFQALGACT GPMLARAMIRDLFARTRAAQMLSTLVLVMAIAPIAGPLIGGQIIRLSTWHAVFWLLVLIG ALMFVSLCWLPETLPEEKRVKASLTGAFRNYRSLLANGRFMRYTLSLTSYYVGAYAFITG SPFVYISYYHVDPQHYGWLFALNIVGVMAMSVVNRRLVQRHPLEQLLKYATMLAALAAVA LALLVKLESGGIVAIIVTVFLLFSMNGIIAATSTAAALDAVPNIAGSASALIGALQYGSG IISSLLLAAFSNGTPWTMAWIIALFTLLSAALASGTKR >gi|283548478|gb|GG730299.1| GENE 1195 1286669 - 1288057 1816 462 aa, chain - ## HITS:1 COG:ECs2308 KEGG:ns NR:ns ## COG: ECs2308 COG1282 # Protein_GI_number: 15831562 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase beta subunit # Organism: Escherichia coli O157:H7 # 1 462 1 462 462 816 95.0 0 MSGGLVTAAYIVAAILFIFSLAGLSKHETSQQGNNYGIAGMAIALIATIFGPDTGNVAWI LVAMIIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVGFNSYLYHDTGLEPILVNI HLTEVFLGIFIGAVTFTGSVVAFGKLRGKISSKPLMLPNRHKMNLAALVVSFLLLVVFVR TESVGLQVLALLVMTIIALAFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDL LIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGSDGSSTGSDEEVGEHREISAEDTA EMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGIKVRFGIHPVAGRLPGHMNVLLA EAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPRSPIAGMPVLEVWKAQNV IVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKAL >gi|283548478|gb|GG730299.1| GENE 1196 1288068 - 1289597 1738 509 aa, chain - ## HITS:1 COG:ECs2309 KEGG:ns NR:ns ## COG: ECs2309 COG3288 # Protein_GI_number: 15831563 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Escherichia coli O157:H7 # 1 509 1 510 510 916 93.0 0 MRIGIPRERLTNETRVAATPKTVEQLLKLGFSVAVESGAGQLASFDDKAFVQAGAEIVDG NAVWQSEIILKVNAPEEAQIPLLNPGTTLVSFLWPAQNPELLQKLAERNVTVMAMDSVPR ISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAA IGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSEAFIKAEME LFAAQAKDVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPNQV TTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVVRGVTV VREGEITWPAPPIQVSAQPQAAPKAAPEPKEEKKPVSPWRKYALMALVVILFGWLADVAP KEFLGHFTVFALSCVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFL SFIAVLIASINIFGGFTVTQRMLKMFRKN >gi|283548478|gb|GG730299.1| GENE 1197 1290123 - 1291067 953 314 aa, chain + ## HITS:1 COG:no KEGG:ROD_14601 NR:ns ## KEGG: ROD_14601 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 314 1 314 314 502 93.0 1e-141 MKLKNTLLASALISATAFSVNAATELTPEQAAALKPYDRIVVTGRFNAIGDAVTAVSRRA DKDGAASFYVVDTSDFGSGGNWRVVADIYKADAEKAEVSKNRIINGVMELPKDQAVLIEP YDTVTVQGFYRSQPEVNDAITKAAKEKGAYSFYIVRQVDANQGGNQRITAFIYKADAKKR IVQSPDAIPADSDAGRAALAAGGEAAKKVEIPGVATTASPSAEVGRFFETQSTKGGRYTV TLPDGTKVEELNKATAAMMVPFDSIKFTGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWS ERGNNMTISADLYK >gi|283548478|gb|GG730299.1| GENE 1198 1291254 - 1292636 1642 460 aa, chain + ## HITS:1 COG:ydgI KEGG:ns NR:ns ## COG: ydgI COG0531 # Protein_GI_number: 16129563 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 460 1 460 460 749 95.0 0 MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWAITGAGILLLAFAMLIL TRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSYLVIVFSALSFFTDTPELR LFGDGNTWQAIVGASTLLWIVHFLVLRGVQTAASINLAATLAKLLPLGLFIVLAFMLFKL DTFSLDFTGVALGVPVWEQVKNTMLITLWVFIGVEGAVVVSARARNKRDVGRATLLAVLA ALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEMMGPWGEIIIAAGLIVSVCGAYLSW TIMAAEVPFLAATHKAFPRIFARQNAQGAPSASLWLTNICVQICLVLIWLTGSDYNTLLT IASEMILVPYLLVGAFLLKIASRPLHKAVGVGASIYGIWLLYASGPMHLLLSVVLYAPGL LVFLYARKTHAHDNVLKRQEMALIGLLLVAAVPATWMLVG >gi|283548478|gb|GG730299.1| GENE 1199 1292673 - 1293395 621 240 aa, chain + ## HITS:1 COG:ECs2312 KEGG:ns NR:ns ## COG: ECs2312 COG1028 # Protein_GI_number: 15831566 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli O157:H7 # 1 240 1 240 240 437 88.0 1e-123 MGKKPPLPILITGGGRRIGLAVAWHFLNQKQPVIISYRTHYPAIDGLREAGALCIQADFS TDQGVLAFADEVKAHTNGLRAIVHNASAWVAEKPGIPLTEVLSGMMQIHVNTPYLLNHAL EALLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPEVKVNAIA PSLILFNESDDAEYRQQALNKSLMKTAPGEKEVIDLIDYLLTSCFVTGRSFALDGGRHLR >gi|283548478|gb|GG730299.1| GENE 1200 1293392 - 1293727 321 111 aa, chain - ## HITS:1 COG:STM1476 KEGG:ns NR:ns ## COG: STM1476 COG3136 # Protein_GI_number: 16764821 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein required for alginate biosynthesis # Organism: Salmonella typhimurium LT2 # 1 111 1 111 111 157 89.0 4e-39 MGLVIKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTTIV FSMWSIIPYFVYLVSLWYFTGFMRLPVALGGSVVCWSLSAWLLIFCWIKLH >gi|283548478|gb|GG730299.1| GENE 1201 1293854 - 1294597 896 247 aa, chain + ## HITS:1 COG:STM1475 KEGG:ns NR:ns ## COG: STM1475 COG0745 # Protein_GI_number: 16764820 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 240 1 240 243 387 85.0 1e-107 MNTIVFVEDDPEVGSLIAAYLARHDIEVIVEPRGDLAEERILHVQPDLVLLDIMLPGKDG MTICRDLRGRWQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQSE HSAQSKGIQAATIAPHTTLRFGALTIDPTNRSVLLSGEQVSLSTADFELLWELATHAGQI MDRDALLKNLRGVSYDGMDRSVDVAISRLRKKLLDNATEPYRIKTVRNKGYLFAPHAWDE QPQKSSH >gi|283548478|gb|GG730299.1| GENE 1202 1294730 - 1295758 702 342 aa, chain - ## HITS:1 COG:STM2783 KEGG:ns NR:ns ## COG: STM2783 COG3376 # Protein_GI_number: 16766094 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Salmonella typhimurium LT2 # 15 342 10 336 337 355 58.0 6e-98 MNLLFSLLKKRPNIILLVVILAGANVVAWLWAFSAFRNHTSLLALSLIAWCYGLRHAVDA DHIAAIDSATRKLMQQNKRALTTGAWFSLGHSTIVVLASIGIALTTSVFKQHMAWFQNIG GLIGTTVSAAFLLILAAINLVIFCHVWKAFRHLKRTGTYAGNPEEIAVSGPMNWIFRSAF RLVGKDWHMYFVGFLFGLGFDTATEISLLGISASSASSGMSVWSILVFPALFTCGMALID CLDSILMVEAYGWAFNKPQRKLYYNMTITGTSVIVALFIGGLEALGLLSDAFSLQGGMWD AVSNLSDHMGNVGFVIIGVFVGCWIISAVNYRWKKYDGLTFS >gi|283548478|gb|GG730299.1| GENE 1203 1295973 - 1296764 552 263 aa, chain + ## HITS:1 COG:no KEGG:Entcl_2562 NR:ns ## KEGG: Entcl_2562 # Name: not_defined # Def: beta-lactamase-like protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 262 1 262 268 489 84.0 1e-137 MIVLCKACGTSYEITHSHPQHCAICNDERQYVPAAGQQWIDFSALCASHTNKWKQHNSDL LSLRTVPDFAIDQRAFVLRTPEGNILWDCIATLDDATKMLITSLGGLKAIAISHPHYYTT MQDWAEEFNAPIYLHANDRKWVMRDSPWIRFWDGDTLELTREVSVIRLGGHFAGGCVLHW ARDEGVVLSGDIVQVTPGAHAVSFMWSYPNMLPLPAAAVSDIIRRLQAVKFKQLFGAFEG KDIMDNADEIVQRSGENYISCLG >gi|283548478|gb|GG730299.1| GENE 1204 1297201 - 1298502 1056 433 aa, chain + ## HITS:1 COG:STM1471 KEGG:ns NR:ns ## COG: STM1471 COG0642 # Protein_GI_number: 16764817 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 433 1 433 433 768 87.0 0 MKKLFVQFYLLLFVCFLVMTLLVGLVYKFTAERAGRQSLDDLMKSSLYLMRSELREIPPR DWGKTLKEMDLNLSFDLRVEPLNKYTLDAPTMQRLREGDIVALDDQYTFIQRIPRSHYVL AVGPVPYLYFLHQMRLLDVALMAFIAISLAFPVLIWMRPHWQEMLRLEAAAQRFGEGHLG ERLHFDNGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSENL TEQESHALNRDIGQLEALIEELLTYARLDRPQNELKLSVPDLPVWLTTHLEDVQSVNPDR AVRLRHLKSGDYGALDMRLMERVLDNLLNNALRYCQSTVQASLMLNGNQATLVVEDDGPG IAPDAREQIFEPFVRLDPSRDRATGGCGLGLAIVRSIALAMGGTVVCDESELGGARFCFS WPVWHNIPEISAA >gi|283548478|gb|GG730299.1| GENE 1205 1298576 - 1299505 1033 309 aa, chain + ## HITS:1 COG:no KEGG:CKO_01620 NR:ns ## KEGG: CKO_01620 # Name: not_defined # Def: DNA replication terminus site-binding protein # Organism: C.koseri # Pathway: not_defined # 1 309 1 309 309 513 87.0 1e-144 MARYDLVDRLNGTFRQMEQALALLNENLLQQTLLVARVFSLPEVVKEAEHAPLQSIDVKQ HLGKEAETLALGHYRHLFIQQQSENRSSKAAVRLPGVLCYQVDNAAQSALEEQIQRINQL KTTFERIVTVESGLVPAARFEWVHRHLPGLITLNAYRTLTLVKEPATLRFGWANKHIIKN LKRDEVLQQLEKSLTSPRSVHPWTREEWQAKLEREYQDIAALPQQAKLKIKRPVKVQPIA RVWYQGEQKQVQYACPTPLIALINNDNGMVVPDIGELLNYDADNVQHRFKPQAQPLRLII PRLHLYVAD >gi|283548478|gb|GG730299.1| GENE 1206 1299502 - 1300905 1313 467 aa, chain - ## HITS:1 COG:STM1469 KEGG:ns NR:ns ## COG: STM1469 COG0114 # Protein_GI_number: 16764815 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Salmonella typhimurium LT2 # 1 466 1 466 467 855 92.0 0 MVTVRRENDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPVSLIHALALTKRAAAKVNE DLGLLAEDKARAIMQAADEVLADKHRDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKSLIPQLTVLTKTLSDKSHSFAD IVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIENSLPHVAELALGGTAVGTGLNTHP EYARRVADELRVITCAPFVTAPNKFEALATCDALVHAHGALKGLAASLMKIANDVRWLAS GPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNV YRPMVIHNFLQSVRLLADGMESFNEHCAIGIEPNRERIDQLLNESLMLVTALNTHIGYDK AAEIAKKAHKEGLTLKASALALGYLTEAEFDSWVRPELMVGSMRPGS >gi|283548478|gb|GG730299.1| GENE 1207 1301047 - 1302693 483 548 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 76 531 38 482 508 190 32 2e-46 MSNKPFHYQHPFPLKKDDTEYYLLTSDYVSVAEFEGQEVIKVAPQALTLLARQAFHDASF MLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGILPTCQDTGTAIIVGKKGQR VWTGGGDEAALARGVYNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYSVDGDEYKF LCIAKGGGSANKTYLYQETKALLSPGKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAEA TLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKELLIEAQNLGLGAQFGGKYFAHDIRV IRLPRHGASCPVGMGVSCSADRNIKAMINREGIWIEKLEHNPGKYIPEELRQAGEGEAVR VDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERLDSGENLPQYIKDHPIY YAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAAGGSMIMLAKGNRSQQVTDACHKHGGF YLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFKQIQT SQCARCVK >gi|283548478|gb|GG730299.1| GENE 1208 1302956 - 1304131 1194 391 aa, chain + ## HITS:1 COG:manA KEGG:ns NR:ns ## COG: manA COG1482 # Protein_GI_number: 16129571 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Escherichia coli K12 # 1 391 1 391 391 656 86.0 0 MQKLINSVQNYAWGSKTALTELYGMANPAQQPMAELWMGAHPKSSSQVLGADGQTIALRD VIERDKSALLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNKHNSEIGFAKENAAGIPMD AAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVALLQPVSAAHPAIAHFLQEPCAERL SYLFASLLNMQDEEKSHALAILKSALNSQQGEPWQTIRLVADFYPNDSGLFSPLLLNVVK LNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDIPELVANVKFVAKPANQ LLTTPIKTAGELDFPIPVDDFAFSLHELTADGADISQQSAAILFCIEGQAVLSKGEQRLV LQPGESAFISANESPVNVSGTGRLARVYNKL >gi|283548478|gb|GG730299.1| GENE 1209 1304184 - 1305746 1687 520 aa, chain + ## HITS:1 COG:STM1466 KEGG:ns NR:ns ## COG: STM1466 COG5339 # Protein_GI_number: 16764812 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 19 520 1 502 502 759 77.0 0 MSLLQASSNAWFYFMDIEMKKSLVAAGVVVALGIVWTGGAWYTGKKLETHLAEMVTQAND QLKRYSPEAGIELSYQNYQRGVFNSQLQLVVKPIAGQQDSWLKPGQSIVLNETVDHGPFP LAQLKSLNLIPAMASVKTTLVNNDVTKPLFDIAKGETPFVINSRIGYGGDTRSDLSLKPL NYENGDEKVAFSGGEFQFTADKDGNAVSLTGEAQSGQVNAVNEYDQKVQITFTNLKTEGS SSIASFDERIGNQKLSLDKLAISVEGKELAVLEGMGIDGKSDLVNNGKTVNSQLDYTLNS LKLQGQDLGSGKLTLKVDQIDGAALHQFSQQYSAQTRALMSQVDVVQNPELYQQKVTEAF FNALPILMKGEPVITIAPLSWKNAKGETAFNLSLLLKDPTANTVEPQTLAQEVDRSVKSL DAKLTIPVDMATELMTQVGKIEGYQQEQAEGMAKQQVDILSSLGQTYHVTTKENNTIGSS LQYANGQVTLNGKQMPLDEFVGMFGMPTLEEPDAPVAPQQ >gi|283548478|gb|GG730299.1| GENE 1210 1305800 - 1306879 1009 359 aa, chain - ## HITS:1 COG:malI KEGG:ns NR:ns ## COG: malI COG1609 # Protein_GI_number: 16129578 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 18 359 1 342 342 565 83.0 1e-161 MIDKTFYPSRYREFSVFMAIAKKITIHDVALAAGVSVSTVSLVLSGKGRISSATGERVNA AIEQLGFVRNRQASVLRGGQSGVVGLIVRDLSTPFYAELTAGLTEALEAQGRMVFLLHGG KDGEQLAQRFTMLLNQGVDGVVIAGAAGSSDTLQQLAAEKGIPVVFASRASYMDDVDTVR PDNMQAAQLLVEHLIRHGHQRIAWLGGQSSSLTRAERVGGYCATLLKYGLPFHSDWVVEC SSSQKQAAEEVTALLRRNPTISAVVCYNEIIAVGAWFGLMRAGRQSGEIGVDRYFEQQIS LAGFADVAENALDDIPIIWACTPAREMGYTLAERMLQRIGHDEGQSRSLTLSARLVMQK >gi|283548478|gb|GG730299.1| GENE 1211 1306997 - 1308589 1596 530 aa, chain + ## HITS:1 COG:malX_1 KEGG:ns NR:ns ## COG: malX_1 COG1263 # Protein_GI_number: 16129579 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 450 1 450 450 804 92.0 0 MTTRTLPKITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVLTLIPALGNPVLQ AIFTWMSKVGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKG ILPTTDAAVLKANNVQNILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPDALAFFGGT RFVPIISSVIMGLVGLVIPLIWPVFAMGITGLGHIINSAGEFGPMLFGTGERLLLPFGLH HILVALIRFTEAGGTQEVCGHSVSGALTIFQAQLSCPTTQGFSESATRFLSQGKMPAFLG GLPGAALAMYHCARPENRHKIKGLLISGLIACVIGGTTEPLEFLFLFVAPVLYVIHALLT GLGFTVMAVLGVTIGNTDGNLIDFVVFGILHGLSTKWYLVPVVAAIWFAVYYAIFRFAIT RFNLKTPGREVEVASTIEKVMAGAPGKSGYNVPAILAALGGAENIVSLDNCITRLRLSVK DMSLVNVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEIAVLMNTVQA >gi|283548478|gb|GG730299.1| GENE 1212 1308600 - 1309772 966 390 aa, chain + ## HITS:1 COG:ECs2330 KEGG:ns NR:ns ## COG: ECs2330 COG1168 # Protein_GI_number: 15831584 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Escherichia coli O157:H7 # 1 390 1 390 390 698 83.0 0 MFDFSKVVDRHGTWCTQWDYVADRFGSADLLPFTISDMDFATAPCILEALTQRLSHGVLG YSRWKNDEFLAAIQHWFLTRHNTKIEPQSLVYGPSVIYMVSELIRQWSSAGDAVVIHTPA YDAFYKAIEGNQRVARAVELEKRADGWYCDMAVLEKVLSQPESKILLLCSPQNPTGKVWT HNELETMAELCQRHGVKVISDEIHMDMVWGDHPHIPWSNVARDSWALLTSGSKSFNIPAL TGAYGIIEDAQSRNDYLSALKGRDGLSSPAVLALTAHIAAYQQGANWLDALREYLTSNLH YVARELNAAFPELNWQVPQSTYLAWIDLRPLNIDDHTLQEALIHQQKIAIMPGYTYGEEG RGFVRLNAGCPRSKLEKGVQGLINAIRTIR >gi|283548478|gb|GG730299.1| GENE 1213 1310201 - 1310386 228 61 aa, chain + ## HITS:1 COG:STM1513 KEGG:ns NR:ns ## COG: STM1513 COG3729 # Protein_GI_number: 16764858 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1 60 1 60 60 65 93.0 2e-11 MAEHRGGSGNFAEDREKASEAGRKGGQHSGGNFKNDPQRASEAGKKGGQSSHGGGRKSDN S >gi|283548478|gb|GG730299.1| GENE 1214 1310479 - 1310976 627 165 aa, chain + ## HITS:1 COG:STM1729 KEGG:ns NR:ns ## COG: STM1729 COG3685 # Protein_GI_number: 16765073 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 165 1 165 167 213 84.0 1e-55 MHMKSIEDVFIHLLSDTYSAEKQLTRGLAKLARAASNEKLSTAFNAHLEETQGQIERIDQ IVEQEAGIKIKRIKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTL VTLAEQLGYKKAVKLLAETLEEEKQTDLKLTDLAVGNINKNAEKR >gi|283548478|gb|GG730299.1| GENE 1215 1311001 - 1311507 369 168 aa, chain + ## HITS:1 COG:STM1730 KEGG:ns NR:ns ## COG: STM1730 COG3685 # Protein_GI_number: 16765074 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 168 1 168 168 275 85.0 4e-74 MNHMQHYHDWLRDAHAMEKQAESMLESMASRIDNYPDVRARIEQHINETKRQITLLEEIL ERNDISRSVLKDSMSKMAAFGQSIGGMFPSDEIVKGAISGYVFEQFEIACYTSLLAAAKK VGDTASIPAIETILAEEREMADWLMKHLPQTTEQFLLRSDADGVVAKK >gi|283548478|gb|GG730299.1| GENE 1216 1311559 - 1312965 875 468 aa, chain + ## HITS:1 COG:STM0360 KEGG:ns NR:ns ## COG: STM0360 COG1271 # Protein_GI_number: 16763740 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 3 467 2 466 467 754 80.0 0 MPEFDAFYLARFQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRNNLWRSLYNFWLQI FAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLLYEVLTAFFLEAGFLGVMLFGW NKVSPALHFFTTCMVALGTLLSTFWILASNSWMQTPQGFSLENGHVIPQDWLAIVFNPSF PYRLLHMSIAAFLSSAMFVGASAAWHLLRGNDTPAIRKMFSMALWMALIVAPIQAVVGDM HGLNTLEHQPAKIAAIEGHWENSPGEATPLTLFGMPDMEEERTKYALAIPALGSLILTHS LDKQVPALKDFPKEDRPNSAIVFWSFRIMVGMGVLMIALGICSVWLRWRKRLYHSRPFQW FALLMGPAGLLALLAGWVTTEVGRQPWIVYGFLRTRDAVSLHSTTQIVISLLVFIVVYCT VFGVGYHYIFRLIKKGPQPVSELTSQTDGTPARPLSAAEPVTDEEEKI >gi|283548478|gb|GG730299.1| GENE 1217 1312965 - 1313975 996 336 aa, chain + ## HITS:1 COG:STM0361 KEGG:ns NR:ns ## COG: STM0361 COG1294 # Protein_GI_number: 16763741 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 336 1 336 336 424 72.0 1e-118 MDIDITVIWFVIIIFATLMYIVMDGFDLGIGMLFCIVHAPGERDVMVNSVAPVWDGNETW LVLGGAGLFGAFPLAYAVIADALAIPLTMMLIGLIFRGVAFEFRFKATPSHRLFWDYAFA GGSLLATVSQGIVVGAVISGFDISGRRFAGSALDWLTPFNVFCGLGLVAAYLLLGTTWLI MKSDGALQKRMRKLTRRVLIALLAVIAVVSIWTPLSWQYIAERWFTLPNFYWFVPVPILV TIFSLWIWRLSCDNTSHARPFILTLGLIFLGFSSLGISLWPYIIPPNITLWDAAAPPSSQ MFMLVGTLFIIPVILMYTAWSYYVFRGKVSDGEGYH >gi|283548478|gb|GG730299.1| GENE 1218 1314137 - 1315138 924 333 aa, chain + ## HITS:1 COG:STM1463 KEGG:ns NR:ns ## COG: STM1463 COG1816 # Protein_GI_number: 16764811 # Func_class: F Nucleotide transport and metabolism # Function: Adenosine deaminase # Organism: Salmonella typhimurium LT2 # 1 333 1 333 333 611 91.0 1e-175 MIDTSLPLTDVHRHLDGNIRAQTILDLGRQFNLTLPAQTLETLIPHVQVTSTEPDLVSFL SKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPGYMAMAHQLPVAGVVEAVI AGVREGCKTFGVEARLIGIMSRTFGEAACLQELDALLAHRDHITALDLAGDELGFPGSLF LSHFNQARDAGWHITVHAGEAAGPESIWQAIKELGAERIGHGVKAVEDRALMDYLAEHRI GIESCLTSNIQTSTVAALATHPLKTFLEHGVVASLNTDDPAVQGVDIIHEYTIAAPAAGL TREQIRQAQINGLEMAFLSNEEKRALREKVAAA >gi|283548478|gb|GG730299.1| GENE 1219 1315240 - 1316280 1030 346 aa, chain - ## HITS:1 COG:STM1462 KEGG:ns NR:ns ## COG: STM1462 COG0673 # Protein_GI_number: 16764810 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Salmonella typhimurium LT2 # 1 346 26 371 371 666 92.0 0 MSDNIRVGLIGYGYASKTFHAPLIVGTPGLELAAVSSSDEAKVKADWPTVTVVAEPKHLF NDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALARSLGRVLSV FHNRRWDSDFLTLKALLADGVLGEVAYFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPH LLDQAINLFGLPVSLTVDLAQLRPGAQSTDYFHAILTYPQRRVILHGTMLAAAESARYIV HGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTRIEGEEQVEETWLTVPGNYP AYYAGIRDALNGNGENPVPARQAIQIMELIELGLESAKHRSTLCLA >gi|283548478|gb|GG730299.1| GENE 1220 1316477 - 1316647 134 56 aa, chain + ## HITS:1 COG:no KEGG:SARI_01519 NR:ns ## KEGG: SARI_01519 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 5 56 22 73 73 88 88.0 7e-17 MPPVFMDKSKQMSSVMNRLIELTGWIVLAVSVILLGIANHIDNYQPPEPIASVQKK >gi|283548478|gb|GG730299.1| GENE 1221 1316939 - 1317154 200 71 aa, chain + ## HITS:1 COG:no KEGG:G2583_2020 NR:ns ## KEGG: G2583_2020 # Name: cnu # Def: OriC-binding nucleoid-associated protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 71 1 71 71 130 91.0 2e-29 MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDGDIINMYRAADHRRAELISGGRLFDVG QVPKSVWHYVQ >gi|283548478|gb|GG730299.1| GENE 1222 1317204 - 1317686 514 160 aa, chain + ## HITS:1 COG:no KEGG:SPC_2271 NR:ns ## KEGG: SPC_2271 # Name: ydgK # Def: hypothetical protein # Organism: S.enterica_Paratyphi_C # Pathway: not_defined # 1 160 1 160 160 218 85.0 5e-56 MNGMIDCARKPGEEMTTTPAQRIGGWLLGPLAWLLVALLSASLALLLYVTALATPQTFQA LGEQSTTNLLLWGVSFITAIAMWYYTLWLTIAFFKRRACVPKHYILWLLISVLLAIKAFA FSPVPDAFAVRQLLFPLLAAALLVPYFKRSQRVKTTFVNP >gi|283548478|gb|GG730299.1| GENE 1223 1317763 - 1318344 653 193 aa, chain + ## HITS:1 COG:STM1459 KEGG:ns NR:ns ## COG: STM1459 COG4657 # Protein_GI_number: 16764807 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Salmonella typhimurium LT2 # 1 193 1 193 193 286 98.0 2e-77 MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLID TWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPALYRLLGIFLPLITTNCAVLGVA LLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLM SLAFMGFSGLVKL >gi|283548478|gb|GG730299.1| GENE 1224 1318344 - 1318922 533 192 aa, chain + ## HITS:1 COG:ydgM KEGG:ns NR:ns ## COG: ydgM COG2878 # Protein_GI_number: 16129586 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Escherichia coli K12 # 1 191 1 191 192 337 90.0 6e-93 MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCHPY AEAIGSQGEKINRCAPGGEAVMLKIAALLNVDPQPIDGDEHDVTPVRMLAVIDENNCIGC TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIELRPVAETPDSWKWDLNT IPVRIIPVEQHV >gi|283548478|gb|GG730299.1| GENE 1225 1318915 - 1320939 1706 674 aa, chain + ## HITS:1 COG:Z2636 KEGG:ns NR:ns ## COG: Z2636 COG4656 # Protein_GI_number: 15802043 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Escherichia coli O157:H7 EDL933 # 1 673 1 675 740 989 88.0 0 MFKLFSAFRKNKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS VGDAVLRGQALTIGRGKMLPVHAPTSGTIVAIAPHSTAHPSALAELSVVIDADGEDRWIE RDGWADYRSRSREELIARIHQYGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT ADDRLMQDCAAQVVEGIRILAHILQPREILLGIEDNKPQAISMLRAVLADSHDISLRVIP TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAIKRAVIDGEPITERVVTLT GEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL LAPSASEMGETPEEKGCIRCSACADACPADLLPQQLYWFSKGQQHDKSTTHNIADCIECG ACAWVCPSNIPLVQYFRQEKAEIYAISQEEKRAAEAKARFEARQARLEREKAARLERHKS AAVQPAAKDHDAIAAALARVKEKQAQAMQPVVIQAGEKPDNSAVIAAREARKAQARAARA ENANTTEDSSAANDPRKAAVEAAIARAKARKLTQEAVTETAEPVDPRKAAVEAAIARAKA RKLEQQAATETTEPVDPRKAAVEAAIARAKARKLEQQAATETAEPVDPRKAAVAAAIARA QAKKAAQQQVVNEE >gi|283548478|gb|GG730299.1| GENE 1226 1320940 - 1321992 991 350 aa, chain + ## HITS:1 COG:ECs2339 KEGG:ns NR:ns ## COG: ECs2339 COG4658 # Protein_GI_number: 15831593 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Escherichia coli O157:H7 # 1 350 1 350 352 574 88.0 1e-163 MVFRIASSPYTHNQRQTSRIMMLVLLAALPGIAAQLWFFGWGTLFQIVLAAISALAAEAG VLKLRKQPIVPILKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP FNPAMIGYVVLLISFPVQMTSWLPPQEIAATVPGFFDALNVIFTGHTAGGSDMNALRMGI DGISQATPLDTFKTSLHAGRTVEQVMQYPIYSGMLAGAGWQWVNLAWLAGGVVLLWQKAI RWHIPVSFLLSLGVCATLGWLFSPESLASPQLHLLSGATMLGAFFILTDPVTASTTNRGR LIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHR >gi|283548478|gb|GG730299.1| GENE 1227 1322002 - 1322622 636 206 aa, chain + ## HITS:1 COG:STM1455 KEGG:ns NR:ns ## COG: STM1455 COG4659 # Protein_GI_number: 16764803 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Salmonella typhimurium LT2 # 1 206 1 206 206 356 86.0 2e-98 MLKTIRKHGITLALFAAGSTGLTAAINQLTKSTIDEQAALQQKVLFDQVLPGDRYNNVLS ESCYLVNAQALGKGTHRVYIARQDDRPVAAILEATAPDGYSGAIQLLVGVDFKGTVLGTR VTEHHETPGLGDKIELRLSDWITHFSGKTIGTGNDAHWAVKKDGGDFDQFTGATITPRAV VNAVKRAGLYAQTLPAQLPQLSACGE >gi|283548478|gb|GG730299.1| GENE 1228 1322626 - 1323318 913 230 aa, chain + ## HITS:1 COG:STM1454 KEGG:ns NR:ns ## COG: STM1454 COG4660 # Protein_GI_number: 16764802 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Salmonella typhimurium LT2 # 1 230 1 230 230 363 93.0 1e-100 MSEIKDVIVQGLWKNNSALVQLLGMCPLLAVTSTATNALGLGLATTLVLTLTNLTISALR RWTPSEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAA KKGPALSALDGFSIGMGATGAMFVLGSLREIIGNGTLFDGADGLLGSWAKVLRVEIFHTD TPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAEAAVADSPAGETGNV >gi|283548478|gb|GG730299.1| GENE 1229 1323318 - 1323953 418 211 aa, chain + ## HITS:1 COG:STM1453 KEGG:ns NR:ns ## COG: STM1453 COG0177 # Protein_GI_number: 16764801 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 421 97.0 1e-118 MNKAKRLEILTRLRDNNPHPTTELNFTSPFELLISVLLSAQATDVSVNKATAKLYPVANT PAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRK TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPSEFKVDCHHWLI LHGRYTCIARKPRCGSCIIEDLCEFKEKVDI >gi|283548478|gb|GG730299.1| GENE 1230 1324567 - 1326072 1751 501 aa, chain + ## HITS:1 COG:STM1452 KEGG:ns NR:ns ## COG: STM1452 COG3104 # Protein_GI_number: 16764800 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Salmonella typhimurium LT2 # 1 500 1 500 501 879 95.0 0 MSTANNKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAVVLAIGYALVAWSGHDAGIVYMGMA AIAVGNGLFKANPSSLLSTCYAKDDPRLDGAFTMYYMSVNIGSFFSMLATPWLAAHYGWS TAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINFRNLLLTIAGVVVLIAIATWLLH NQQIARMVLGVIAIGIVFIFGKEAFTMHGAARRKMIVAFILMLEAIIFFVLYSQMPTSLN FFAIRNVEHSILGIAFEPEQYQALNPFWIIIGSPILAAIYNKMGDNLPMPTKFAIGMVLC SGAFLILPLGAKFATDAGIVSVNWLIISYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM GSWFLTTAGANIIGGYVANMMAVPENVTDPLMSLEVYGRVFLQIGVATAVIAVLMLLTAP KLNRMTQDDDVNEKASKAATA >gi|283548478|gb|GG730299.1| GENE 1231 1326178 - 1326783 718 201 aa, chain + ## HITS:1 COG:ECs2344 KEGG:ns NR:ns ## COG: ECs2344 COG0625 # Protein_GI_number: 15831598 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1 200 1 200 201 339 87.0 2e-93 MKLFYKPGACSLASHITLRESGKDFTLDGVDLMKKRLENGDDFFAVNPKGQVPALLLDDG TLLTEGVAIMQYLADTVPDRQLLAPTSSLSRYKTLEWLNYIATELHKGFTPLFRPDTPEE YKPTVRAQLEKKLQYVNESLQNNQWICGPRFSIADAYLFTVLRWAYAVKLNMAGLSNIDA YMARMAERPAVAAALKAEGLS >gi|283548478|gb|GG730299.1| GENE 1232 1326891 - 1327751 928 286 aa, chain - ## HITS:1 COG:pdxY KEGG:ns NR:ns ## COG: pdxY COG2240 # Protein_GI_number: 16129594 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal/pyridoxine/pyridoxamine kinase # Organism: Escherichia coli K12 # 1 286 2 287 287 526 91.0 1e-149 MKNILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLT DIVQGIADIDKLHTCDAVLSGYLGSAEQGEHILGIVRKVKAANPQAKYFCDPVMGHPEKG CIVAPGVAEFHVRHALPASDIIAPNLVELEILCEHAVHNVTEAVTAARELIAQGPEIVLV KHLARAGISPDRFEMLLVTAEQAWHISRPLVDFGARQPVGVGDVTSGLLLVKLLQGASLQ QALEHVTAAVYEVMIATKEMHEYELQVVAAQDRIAQPEHYFSATQL >gi|283548478|gb|GG730299.1| GENE 1233 1327816 - 1329090 829 424 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4 421 7 414 418 323 42 2e-86 MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKR FQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEDTVQEWVDKIRKQVAPFLDFDCGDNS AIAANNYDWFGGMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQG YDFACLNKLHGVALQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTE GGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMDIEEINALEEEDKNSGKAPRAQ YVLAEQVTRLVHGEEGLVAAKRITESLFNGNLSDLSEADFEQLAQDGVPMIEMEKGADLM QALVDSELQPSRGQARKTIASNAVTINGEKQSDPEYFFQESDILFGRYTLLRRGKKNYCL ICWK >gi|283548478|gb|GG730299.1| GENE 1234 1329217 - 1329873 630 218 aa, chain - ## HITS:1 COG:pdxH KEGG:ns NR:ns ## COG: pdxH COG0259 # Protein_GI_number: 16129596 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxamine-phosphate oxidase # Organism: Escherichia coli K12 # 1 218 1 218 218 412 93.0 1e-115 MSDNDELQQIAHLRREYTKGGLRRRDLPAEPLALFERWLGQACDAKLADPTAMVVATVDE NGQPYQRIVLLKHYDDKGLVFYTNLGSRKAHQIEKNPRISLLFPWHTLERQVMVIGKAER LSTLEVVKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGG FRVSIEQIEFWQGGENRLHDRFLYQREDNAWKIDRLAP >gi|283548478|gb|GG730299.1| GENE 1235 1329933 - 1330256 326 107 aa, chain - ## HITS:1 COG:STM1447 KEGG:ns NR:ns ## COG: STM1447 COG3895 # Protein_GI_number: 16764795 # Func_class: R General function prediction only # Function: Predicted periplasmic protein # Organism: Salmonella typhimurium LT2 # 1 107 3 109 109 190 84.0 5e-49 MKKLLLLCLPVLLSGCSVYNQFVERMQTDTLEYRCDEKPLTVKLNNTRQEVNFVYDNQLL NLKQGMSASGARYTDGIYVFWSKGDEATVYKRDRIVLNNCQLQNPKR >gi|283548478|gb|GG730299.1| GENE 1236 1330350 - 1331471 894 373 aa, chain - ## HITS:1 COG:STM1446 KEGG:ns NR:ns ## COG: STM1446 COG2377 # Protein_GI_number: 16764794 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted molecular chaperone distantly related to HSP70-fold metalloproteases # Organism: Salmonella typhimurium LT2 # 1 373 1 373 373 645 85.0 0 MKSGRFIGVMSGTSLDGVDVVLATIDETMVAQQASLTWPIPIHVKQAILDICQGQQLTLS QFGQLDAQLGYLFAEAVNALLAQEKLKPQDIVAIGCHGQTVWHEPTGSAPHTLQIGDNNQ IVARTGVTVVGDFRRRDIALGGQGAPLVPAFHQALLAHPTERRMVLNIGGIANLSLLIPQ QPVRGYDTGPGNMLMDAWIWRQCGQPYDKDAQWASSGTVILPLLQNMLNDPYFSAPAPKS TGREYFNYGWIERYLAHFPGISPRDVQATLAELTAVTISEQVLLSGGCERLMVCGGGSRN PLLMMRLAALLPGTEVCSTDEAGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASEPSV LGAIFPANPRTQS >gi|283548478|gb|GG730299.1| GENE 1237 1331746 - 1332213 444 155 aa, chain + ## HITS:1 COG:STM1445 KEGG:ns NR:ns ## COG: STM1445 COG3133 # Protein_GI_number: 16764793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein # Organism: Salmonella typhimurium LT2 # 1 155 1 155 155 197 93.0 5e-51 MIKRVLIVSLMGVSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVHVRPVQIQGGDDAN VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQGAMNKTQGVELEIRKDD GNTIMVVQKQGATKFSAGQRVVMANNGSQVTVSPR >gi|283548478|gb|GG730299.1| GENE 1238 1332259 - 1332699 314 146 aa, chain - ## HITS:1 COG:ECs2351 KEGG:ns NR:ns ## COG: ECs2351 COG1846 # Protein_GI_number: 15831605 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 146 1 146 146 229 92.0 1e-60 MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGI EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEAVINKTRGEILEGI SAEEIDLLIKLVARLEHNIIELQSQG >gi|283548478|gb|GG730299.1| GENE 1239 1332892 - 1333128 187 78 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1934 NR:ns ## KEGG: ECUMN_1934 # Name: ydhI # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 78 1 78 78 93 79.0 3e-18 MKFMFNATGLPLQDLMIGASVYFPPVFKAFVAGFILWLVVHRLLRDWIYSGEIWHPLLMD LSLFTLCVCLAFVMLIAW >gi|283548478|gb|GG730299.1| GENE 1240 1333218 - 1333994 767 258 aa, chain + ## HITS:1 COG:STM1442 KEGG:ns NR:ns ## COG: STM1442 COG1566 # Protein_GI_number: 16764790 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Salmonella typhimurium LT2 # 1 256 42 297 298 434 85.0 1e-122 MQSPWTRDGKVRAEQVGIAPQVSGSISELNIKDNQLVNKGDILFVIDKTPFQIAVLNAQA QLAKAQSDLTKANNEAKRRRNLSQNFISAEDLDSALLNVKAMQATVEAAQASLRHAQWQL AQTVVKAPVTGWVTNLSTRSGDYASTGKPLFALVDSNSFYVMGYFEETKLRHIRDGAPAR ITLYSGNVALQGHVSSIGRAIYDQSVESNSGLVPDIKPNVPWVRLAQRVPVRIEFDALPH DVTLVSGTTCSVSIGQSK >gi|283548478|gb|GG730299.1| GENE 1241 1333991 - 1336006 1401 671 aa, chain + ## HITS:1 COG:STM1441 KEGG:ns NR:ns ## COG: STM1441 COG1289 # Protein_GI_number: 16764789 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 670 1 670 679 1143 87.0 0 MKFPTLTPANLPWFKATSGQWRYALRNTIAMCLALTFAYYLDLDEPYWAMTSAAVVSFPT VGGVISKSLGRIAGSLLGATAALMIAGHTLNEPWLFLLSMSAWIGFCTWACAHFTNNAAY AFQLAGYTAAIIAFPMVHITEVTQVWDIAQARVCEVIVGILCGGMMMMILPSTSDGTALL TALKNMHARLLEHASLLWQPETTDAIRTAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL LNSLLHQQLRMTSVISSLRRMLLNWPNPPANTRDIIEQLLGALVKSDTNSYTVARIIAPL RPTDARDYRHVAFWQRLRYFCRLYLRSSHYLRLLESGVTAERINIARTPGLARHTDNAEA IWSGLRTFCTLMLIGAWSIGAQWESGSGALTLAAISSVLYSAVAAPFKSLSLLMRTLVLL SLFSFVVKFGLMVQITDLWQFILFLFPLLVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT NPPVYDYAGFLNDNTAKIAGVALSWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPA LSENEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVLWQLRAWETRSDPLARVR DVCISLLRDVMSERGVQQRPLNATLSELQRICDTLAHHHQPAAQELSALIWRLHCSLSQL EQAPPPGTLSH >gi|283548478|gb|GG730299.1| GENE 1242 1336007 - 1336531 696 174 aa, chain - ## HITS:1 COG:STM1440 KEGG:ns NR:ns ## COG: STM1440 COG2032 # Protein_GI_number: 16764788 # Func_class: P Inorganic ion transport and metabolism # Function: Cu/Zn superoxide dismutase # Organism: Salmonella typhimurium LT2 # 1 174 1 173 173 256 82.0 1e-68 MKRLSVAIITLLACAGAQAASEEKVTINLVTSQGVGQAIGTVAITETAKGLEFTPDLKAL PPGEHGFHVHANGSCQPAIKDGKASAAEAAGGHYDPHDTGKHEGPEGAGHMGDLPLLVVN SEGNATTPVIAPRLKTLDEVKGKALMIHVGGDNMSDQPKPLGGGGARYACGVIK >gi|283548478|gb|GG730299.1| GENE 1243 1336613 - 1337509 974 298 aa, chain - ## HITS:1 COG:ydhF KEGG:ns NR:ns ## COG: ydhF COG4989 # Protein_GI_number: 16129605 # Func_class: R General function prediction only # Function: Predicted oxidoreductase # Organism: Escherichia coli K12 # 1 298 1 298 298 558 89.0 1e-159 MVQRITIAPQGPEFSRFVMGYWRLMDWNMSTRQLVSFIEEHLDLGVTTVDHADIYGGYQC EAAFGEAMKLAPHLREKMQIVTKCGIATTARTENALGHYITDSAHIIASAEQSLKLLATD HIDLLLIHRPDPLMDADDVADAFKTLHHSGKVRHFGVSNFTPAQFSLLQSRLPFTLATNQ VEISPVHQPLLLDGTLDQLQQLRIRPMAWSCLGGGRLFNDDAFQPLRNELAAIAEELNAQ SIEQVVYAWILRLPSQPLPIIGSGKIERVRAAIESEALSMSRQQWFRIRKAALGYDVP >gi|283548478|gb|GG730299.1| GENE 1244 1337559 - 1337864 111 101 aa, chain - ## HITS:1 COG:ydhL KEGG:ns NR:ns ## COG: ydhL COG3313 # Protein_GI_number: 16129606 # Func_class: R General function prediction only # Function: Predicted Fe-S protein # Organism: Escherichia coli K12 # 15 101 39 125 125 152 85.0 1e-37 MALARNSVNVFNSYINLTKGGDVAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFN WQKMSDAQKQEVLRLCRQRLMRKLRANKPNPPEEPHQPSLF >gi|283548478|gb|GG730299.1| GENE 1245 1337900 - 1338499 612 199 aa, chain + ## HITS:1 COG:ydhM KEGG:ns NR:ns ## COG: ydhM COG1309 # Protein_GI_number: 16129607 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 199 1 199 199 340 85.0 1e-93 MNKATEHDTREHLLATGELLCMQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML ERHYAAYHQRLATHFDTGAGNYRDRILAYYQETLNQFSQHGIISGCLTVKLSAEVCDLSE DMRTAMDKGARHIIVLLAQALEKGQANHCLSFVGEPLQQAQVLYALWLGANLQAKISRSA TPLENALAHVKTIITTPGV >gi|283548478|gb|GG730299.1| GENE 1246 1338554 - 1339651 1220 365 aa, chain + ## HITS:1 COG:nemA KEGG:ns NR:ns ## COG: nemA COG1902 # Protein_GI_number: 16129608 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1 365 1 365 365 649 92.0 0 MSSEKLFSPLKVGAITAANRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEAT QISAQAKGYAGAPGLHSEAQIAAWKKITAGVHAEQGHIAVQLWHTGRISHASLQPNGQAP VAPSAISAGTRTSLRDENGLATRADTSMPRALETEEIPGIVNDFRQAIANAREAGFDMVE LHSAHGYLLHQFLSPTSNQRTDQYGGSVENRARLVLEVVDAGIKEWGADRIGIRVSPIGT FQNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGAPYSDAFREKVRARFHGPIIG AGAYTPEKAEALIEKGLIDAVAFGRAYIANPDLVARLQHKAELNPQRAESFYGGGAEGYT DYPTL >gi|283548478|gb|GG730299.1| GENE 1247 1339749 - 1340156 216 135 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900839|ref|NP_345443.1| lactoylglutathione lyase [Streptococcus pneumoniae TIGR4] # 2 127 4 126 126 87 38 2e-15 MRLLHTMLRVGDLQRSIEFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETSEAVIELTYN WGVDKYELGTAYGHIALSVDNAAEACERIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYK IELIEEKDAGRGLGD >gi|283548478|gb|GG730299.1| GENE 1248 1340251 - 1340898 628 215 aa, chain + ## HITS:1 COG:STM1434 KEGG:ns NR:ns ## COG: STM1434 COG0847 # Protein_GI_number: 16764782 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Salmonella typhimurium LT2 # 1 214 1 214 215 423 94.0 1e-118 MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHF HVEPFEGANLQPEALAFNGIDPNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAH NATFDHSFMMAAAERASLKRNPFHPFVTFDTAALSGLSLGQTVLSKACLAAGMEFDGNQA HSALYDTERTAVLFCEIVNRWKRLGGWPLPVPEEA >gi|283548478|gb|GG730299.1| GENE 1249 1340950 - 1341297 409 115 aa, chain - ## HITS:1 COG:STM1433 KEGG:ns NR:ns ## COG: STM1433 COG0278 # Protein_GI_number: 16764781 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin-related protein # Organism: Salmonella typhimurium LT2 # 1 115 1 115 115 224 98.0 3e-59 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA ELPKYANWPTFPQLWVDGELVGGCDILIEMYQRGELQQLIKETAAKYKTEEPDAE >gi|283548478|gb|GG730299.1| GENE 1250 1341704 - 1342462 366 252 aa, chain + ## HITS:1 COG:STM1432 KEGG:ns NR:ns ## COG: STM1432 COG0791 # Protein_GI_number: 16764780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Salmonella typhimurium LT2 # 1 252 35 284 284 300 71.0 2e-81 MAHASKQARTTPTSSHTVKTVDKKKSATKSQKTAKTNKKSATKTTSKTSTKTTSSSKRTA TPAKSTKTANRRSKTAVAQTAAVTWTEKCTPRKGHQPRCVKVKTTAPTSLADAHKVKVQK ATKTAMSTLMSQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAA PIERGELKNGDLVFFRTQGRGTADHVGVYIGNGKFIQSPRSGQEIQITSLSEDYWQRHYV GARRVMTPKTIR >gi|283548478|gb|GG730299.1| GENE 1251 1342590 - 1343171 459 193 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 193 1 199 201 181 44 1e-43 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS EGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFADFKAQFTDAAIKNFG SGWTWLVKGADGKLAIVSTSNAGTPLTTDATPLMTVDVWEHAYYIDYRNARPGYLEHFWA LVNWEFVAKNFAA >gi|283548478|gb|GG730299.1| GENE 1252 1343211 - 1344380 1254 389 aa, chain - ## HITS:1 COG:ydhP KEGG:ns NR:ns ## COG: ydhP COG2814 # Protein_GI_number: 16129615 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 389 1 389 389 544 93.0 1e-155 MKLNYPLLALAIGAFGIGTTEFSPMGLLPVIAKGVDVSIPAAGMLISAYAVGVMVGAPLM TLLLSHRARRNALIFLMAIFTLGNVLSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAAS VVPKHKQASAVATMFMGLTIANIGGVPAATWLGETIGWRMSFMATAGLGVIAMISLFFSL PKGGAGERPDVRSELAVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLHSITHATSAFVT GMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNELGAAIGMVVW GAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPV MGAIVAGLALLLVFVSARRQPEEVCTASS >gi|283548478|gb|GG730299.1| GENE 1253 1344557 - 1344646 154 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTDLKFSLVTTIIVLGLIVAGGLTAALH >gi|283548478|gb|GG730299.1| GENE 1254 1344944 - 1345969 1071 341 aa, chain + ## HITS:1 COG:STM1430 KEGG:ns NR:ns ## COG: STM1430 COG1609 # Protein_GI_number: 16764778 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 341 1 341 341 682 96.0 0 MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNSLEKQQAYLSMMAQKRVDGLL VMCSEYPESLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFEGGYMAGRYLVERGHRE IGVIPGPMERNTGAGRLAGFMKAMEEALIKVPENWIVQGDFEPESGYRAMQQILSQSHRP TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARFFTPALTTIHQPKDSLGET AFNMLLDRIVNKREESQSIEVHPRLVERRSVADGPFRDYRR >gi|283548478|gb|GG730299.1| GENE 1255 1345966 - 1346895 747 309 aa, chain - ## HITS:1 COG:ECs2368 KEGG:ns NR:ns ## COG: ECs2368 COG0583 # Protein_GI_number: 15831622 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 307 1 307 310 585 93.0 1e-167 MWSEYSLEVVDAVARNGSFSSAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTP AGAWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDD VELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYTFRDMGMLSWSCVVASHHPLAS MPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV PTHFAKPWIDNGKWVALQLENPFPDAACCLTWQQNDTSPALSWLLDYLGDSETLNKEWLR EPDEAPAQA >gi|283548478|gb|GG730299.1| GENE 1256 1347006 - 1348211 1169 401 aa, chain + ## HITS:1 COG:ECs2369 KEGG:ns NR:ns ## COG: ECs2369 COG0477 # Protein_GI_number: 15831623 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 401 1 403 403 609 86.0 1e-174 MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQSDLQTPASAVSASLSLFLAGFAVAQLL WGPLSDRYGRKPILLLGLSIFALGSLGMLWVENAAGLLALRFIQAVGVCAASVIWQALVT DYYPSQKVNRIFATIMPLVGLSPALAPLLGSWILVHFSWQAIFATLFAITLVLMLPALRL KPTAKARYDSQDKLTFATLLRSKAYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVI GLSYVPQTIAFLIGGYGCRAALQKWQGRQMLPWLLILYAISVVATWATGFIHHVALAEIL IPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSWLIATPLL TTTSVMLTTVLLAAMGYKMQSQTNPPRQAEDRAQIAHGESH >gi|283548478|gb|GG730299.1| GENE 1257 1348502 - 1349650 1071 382 aa, chain + ## HITS:1 COG:cfa KEGG:ns NR:ns ## COG: cfa COG2230 # Protein_GI_number: 16129619 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Escherichia coli K12 # 1 382 1 382 382 736 89.0 0 MSSSCIEDVSVPDDDWYRITNELLSRAGITINGPAAADIRVKNPDFFKRVLQEGSLGLGE SYMDGWWECDRLDIFFTKVLRAGLENQLPRNFKDTLRIATARLFNLQTKKRAWVVGKEHY DLGNDLFTRMLDPYMQYSCAYWKDADTLESAQQAKLKMIAEKLQLKPGMRVLDIGCGWGG LSHFMASQYGVNVVGVTISAEQQKMAQARCEGLDVTILLQDYRDLNDKFDRIVSVGMFEH VGPKNYNTYFEVVDRNLKQDGLFLLHSIGSNKTDNNVDPWINKYIFPNGCLPSVRQIANA SEPHFVMEDWHNFGADYDTTLMAWHERFMRSWPEIADNYTERFKRMFSYYLNACAGAFRA RDIQLWQVVFSRGVEHGLRVPR >gi|283548478|gb|GG730299.1| GENE 1258 1349696 - 1350337 753 213 aa, chain - ## HITS:1 COG:ribC KEGG:ns NR:ns ## COG: ribC COG0307 # Protein_GI_number: 16129620 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Escherichia coli K12 # 1 212 1 212 213 388 91.0 1e-108 MFTGIVQGTAKLVSIDEKPNFRTHVVELPEYMLDALETGASVAHNGCCLTVTEINGNQIS FDLMKETLRITNLGDLKVGDMVNVERAAKFSDEIGGHLMSGHIMTTAEVSKILTSENNRQ VWFKVQDPSLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV NIEIDPQTQAVVDTVERVLAARESAISNVAGEV >gi|283548478|gb|GG730299.1| GENE 1259 1350556 - 1351929 1546 457 aa, chain + ## HITS:1 COG:STM1425 KEGG:ns NR:ns ## COG: STM1425 COG0534 # Protein_GI_number: 16764773 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Salmonella typhimurium LT2 # 1 457 1 457 457 768 94.0 0 MQKYVSEARQLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILF GHGLLLALTPVIAQLNGSGRRDRIAHQIRQGFWLAGSVSVLIMVVLWNAGYIIRSMHNID PALAEKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPAMVMGFLGLLVNIPVNYVFIY GHLGMPELGGVGCGVATAAVYWVMFAAMLSYVKRARSMRDIRNERGFQKPDSAVMMRLIQ LGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVG YRLGQGSTLEAQTAARTGLGVGVCMAVVTAIFTVTFREHIALLYNKNPEVVALAAQLMLL AAVYQISDSIQVIGSGVLRGYKDTRSIFFITFTAYWVLGLPSGYILALTDLVVDRMGPAG FWMGFIIGLTSAAVLMMLRMRYLQRQPSAVILQRAAR >gi|283548478|gb|GG730299.1| GENE 1260 1351968 - 1352666 300 232 aa, chain - ## HITS:1 COG:PM1836 KEGG:ns NR:ns ## COG: PM1836 COG0564 # Protein_GI_number: 15603701 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Pasteurella multocida # 11 232 8 219 219 168 41.0 6e-42 MSTILDTFIAPPCYDEIEILYQDEHLVLINKPAGLLSLSGKNPQNLDSVHHRLVQIYPGC TLVHRLDFGTSGLMVIARNKAINAALCQQFSQRVVTKAYSALLCGHLENDAGVIDAAIAK DPALFPRMSICAMNGKPARSRYQVIERFLHRQEDGALLPLTRVQLTPETGRTHQLRIHCQ QLGHPILGCDLYGGRLWPGTERTPRLMLHASALHFRHPVSERWMNAESASPF >gi|283548478|gb|GG730299.1| GENE 1261 1352801 - 1353592 544 263 aa, chain + ## HITS:1 COG:PA2770 KEGG:ns NR:ns ## COG: PA2770 COG0384 # Protein_GI_number: 15597966 # Func_class: R General function prediction only # Function: Predicted epimerase, PhzC/PhzF homolog # Organism: Pseudomonas aeruginosa # 3 262 2 259 259 224 47.0 2e-58 MQQIDFYMVDAFSTTTFGGNAAAVCPLPDWLPDETLLKMSKQHNQSETAFFVANDNGFEL RWFTTQGEINLCGHATLAAAHVIFEHLDYPDTTLHFATRFVGPLTVTRSGEWLTLDFPAW ESEPVVPPALLLEALGITEYKEVRAARDYMVVLEDQHQVEAVRPNIHAMVPLGKMVCITA PGDGEYDFVSRFFCPGEAVAEDPVTGSAHSMLIPYWAAKLNKTQMLARQVSERGGDLRCQ LADSRVYIGGQATTYLTGKVLLR >gi|283548478|gb|GG730299.1| GENE 1262 1353627 - 1353935 428 102 aa, chain + ## HITS:1 COG:no KEGG:SPAB_04307 NR:ns ## KEGG: SPAB_04307 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 101 1 101 103 150 71.0 1e-35 MSNKLVQMHFTFHGPFGAEMSQQLVELAESINQEPGFIWKIWTENEANHEAGGIYLFQDE DSAQAYINKHTARLKHLGVEEVIFKMFDVNEPLSKINHGHIG >gi|283548478|gb|GG730299.1| GENE 1263 1354173 - 1354568 285 131 aa, chain + ## HITS:1 COG:RSp1515 KEGG:ns NR:ns ## COG: RSp1515 COG0251 # Protein_GI_number: 17549734 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Ralstonia solanacearum # 16 128 15 128 130 138 62.0 2e-33 MPPDITLNASAGSFPPAGHYSHSTTAGGFVFISGQLPVTRDGEKKADASFEEQTRLALQN VDACLAGAGVSRQHLVSVRVYVTDINQWPTFNRIYGEWIGDFRPARAVAGVAELHYGFAV EIEAIALAPQA >gi|283548478|gb|GG730299.1| GENE 1264 1354596 - 1355564 814 322 aa, chain + ## HITS:1 COG:SPCC320.14 KEGG:ns NR:ns ## COG: SPCC320.14 COG1171 # Protein_GI_number: 19075215 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Schizosaccharomyces pombe # 3 321 4 322 323 480 75.0 1e-135 MTDMTLPDYNDVVAAAERIADYANKTPVMTSRTVNEEFGAEVFFKCENFQRMGAFKFRGA MNALRQFTPQQRAAGVVTFSSGNHAQAIALSAKLLGIPATIIMPHDAPAAKVAATKGYGG NVVVYDRYTEDREKIGRDLAEKQGLTLIPPYDHPHVIAGQGTATKELIEEVGPLDVLFVC LGGGGLLSGSALAARHLPPDCIIYGVEPEAGNDGQQSFRSGNIVHIDTPKTIADGAQTQH LGQYTFQIIQQNVNDILTVSDNELVTAMKFIAERMKIVVEPTGCLGFAAARARKSELQGK KVGIIISGGNVDISRYGEFLAG >gi|283548478|gb|GG730299.1| GENE 1265 1355688 - 1356329 497 213 aa, chain + ## HITS:1 COG:RSp1517 KEGG:ns NR:ns ## COG: RSp1517 COG2964 # Protein_GI_number: 17549736 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 5 209 6 212 214 184 44.0 1e-46 MPKTDNNSLLSQIDTIARGLSETFAPFCEVVVHDLNNPEHAILSIHNNLSGRKQGQPATE LGLARIASPDFPAIVANYSNQFADGRPVKSTSIGIKDEEGKYVAALCLNVDMTLFRGMQS ALARFTETESSPIKEHIDPGSNEVIRQRIDDYAAKRATTARALKPKDRRILIQQLREDGL LNVRKSMDTVAQHLGVSRATAYLYARQSTQAQD >gi|283548478|gb|GG730299.1| GENE 1266 1356742 - 1357236 427 164 aa, chain + ## HITS:1 COG:AGl2662 KEGG:ns NR:ns ## COG: AGl2662 COG3915 # Protein_GI_number: 15891441 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 164 7 168 168 194 56.0 8e-50 MRLIIMLLSLVVSTQVWAGELSKPTGKVLLTLSGNIENTNENGKAVFDAASLEKLGMVSF QTTSPWYNGRTTFTGIPLQKLMDYVGAQGSVVKVTALNDYTTVIPLSDFKKYNVILALKI NGKYMRIRDKGPLFIVYPYDSIPELNNQIYYSRSAWQVSRMDIE >gi|283548478|gb|GG730299.1| GENE 1267 1357254 - 1359182 1090 642 aa, chain + ## HITS:1 COG:RSc1545 KEGG:ns NR:ns ## COG: RSc1545 COG5001 # Protein_GI_number: 17546264 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain # Organism: Ralstonia solanacearum # 226 640 343 758 776 286 38.0 6e-77 MNRILAGIIFFLFISTGYISFLVHERQQELQKLTHYTDSWSAAQMVSQYYRFESLLGLYT IDETMSLDDVRLRLDIMLSQSDLIKEGDLGHYIESNKAHSELALKLENTLNYLDVNLEKM NRAELQAYLKKMHTLDSQLGRLSSGALNKDVNSINNANLKIQTLYYIYSATSVLLIILSA ILGVLIFFQNRNILRAHLQVKSLAEELQKSKEKLQIQNAKLEYDVYHDSLTDMNNRQFFW GNLNQKIEIAEKNNDSVTVMLFDLDRFKEVNDTYGHDAGDILLRQISDRLTAMSLTSDTL YRLGGDEFAFLSSGLTESQAVSLAQKICDFISQPYTIYNTVINITTCVGIVISETERRSD YLYKFADLALYEAKNEGSGKIKVFRQWMLEKLQESRTLEHDMAMALVNKEFVVYYQPIVD SFSRKIYSYEALIRWIHPLKGLLSPDSFIPVAEKTGMINAMGKSVLEIACMEAASWAVPA KISVNVSPVQLSSKAFAGIVLTILKETGLPAERLELEVTESSLFTESNTPMNTLNKLRAL GVKISIDDFGTGYSSLSRLSKLAFDKIKIDKSFVHSISTQEDALNIIKLITGMAKSLNMK AVAEGVETQEQLEKLQALGCDFAQGYLFGKPQPGIDGKIRHG >gi|283548478|gb|GG730299.1| GENE 1268 1359256 - 1359732 337 158 aa, chain + ## HITS:1 COG:RSc2674 KEGG:ns NR:ns ## COG: RSc2674 COG0386 # Protein_GI_number: 17547393 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Ralstonia solanacearum # 1 150 1 151 165 202 60.0 2e-52 MTNFYQFSATSLQGQHISMNDYAGKLVLVVNTASHCGFTPQYAGLEALYKKYAAQGLVVL GFPCNQFGKQEPGGADAIAQTCHINYGVTFPMFEKVDVNGAAAHPVFRYLKDELPGVLGG RIKWNFTKFLIGRDGKPLKRFAPFTTPDKIEPVILAAI >gi|283548478|gb|GG730299.1| GENE 1269 1359983 - 1360699 637 238 aa, chain + ## HITS:1 COG:yeeN KEGG:ns NR:ns ## COG: yeeN COG0217 # Protein_GI_number: 16129927 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 238 1 238 238 415 92.0 1e-116 MGRKWANIVAKKTAKDGATSNIYAKFGVEIYAAAKQGDPDPETNSSLKFVIERAKQAQVP KHVIDKAIDKAKGGSDETFVQGRYEGFGPNGSMLVVETLTSNVNRTIANVRMIFNKKGGN IGAAGSVSYMFDNTGVIVFTGTDPDRIFEILLDAEVDVRDVTEDEGNIVIYTEATDLHKG IAALKAAGITEFSTTELEMIAQSEIELSPEDLEIFTGLVDALEDDDDVQKVYHNVANI >gi|283548478|gb|GG730299.1| GENE 1270 1360659 - 1360850 104 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMFKKYIITLQTSNYKLKKSVFMADFLSYMTFRICVSFMVFLFGAIPEPEPFSLQRQPAN TSV >gi|283548478|gb|GG730299.1| GENE 1271 1360954 - 1362063 1131 369 aa, chain + ## HITS:1 COG:PA2651 KEGG:ns NR:ns ## COG: PA2651 COG0628 # Protein_GI_number: 15597847 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Pseudomonas aeruginosa # 25 349 25 349 352 313 51.0 4e-85 MRFNGLTKGFFIFILAVVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGL ASLITIAIICLIVFIPLMVILSSLAIELNVVYTKLQQNDTQFPEVVTSILSYLPGWARGF LAEHNLDNAAEIQKKLSNIALQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGP YLVRQILDSLPLSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVL WGALMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVG KDTKMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHEGNVEGIDEAFM EEGKNPPDL >gi|283548478|gb|GG730299.1| GENE 1272 1362182 - 1363966 1573 594 aa, chain + ## HITS:1 COG:AGl3494_1 KEGG:ns NR:ns ## COG: AGl3494_1 COG2770 # Protein_GI_number: 15891865 # Func_class: T Signal transduction mechanisms # Function: FOG: HAMP domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 286 1 286 286 166 35.0 2e-40 MRIATITNWAYSATVCLTIASGAVMLMASSADNTERQAVEQRYKFDQLTEEAELDAWSLS DMAREYVIAKDPQALNAYRQKEASLKAVEHRLAALKDLGATGEELALLHEGLQIIDALQD EQAAALASIARGEDPQAIALLFGKSYEQELERAQDRIDHFRQLLDNRVRNTIDDATQASR TLRTASEVMVGLTALLFLFVLGFILKRRVLRPVVRLSDVVNRLASQDYAVETPSFNQIDE IGDMAQAIRIFRENGLARQRLEKERDADWGIRELLARMTQRLQGCESFADVINVAELFAP NIAPGIAGRLYILDREPWQMRCVAQWLAPEGKAEAFHPDECWAVRRGQSHPPVQGKPDIA CYHLPESCQQHTLCVPLIAQGEAIGLLSFQNLSDDSSPSRAYLELMAEALGLALANQRLR DALLEKALYDPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKNINDRFGHEA GDSVIKSIAAIIQRVVHDSGLAFRYGGEEFLVLLAGADEQAANGFATDIYNGVRELSLRF GVSDIGHVDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLEAS >gi|283548478|gb|GG730299.1| GENE 1273 1364185 - 1365189 952 334 aa, chain + ## HITS:1 COG:STM4508 KEGG:ns NR:ns ## COG: STM4508 COG0180 # Protein_GI_number: 16767752 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 334 1 334 337 571 84.0 1e-163 MNNKTIILTGDRPTGPLHLGHYVGSLRQRAALQHDYQQFILVADLQGLTDNGSTPQKIQN NIPEVLADYLAAGIDPSLTTVCLQSALPALAELTALYMNIVTVARVERNPTVKNEIAQKG FARSLPVGFLVYPISQAADITAFKAEVVPVGDDQLPMIEQTNEIVHKMNSLLPTPVLTHC KALLSATSRLPGIDGNAKMSKSLGNTILLSASEETIHRAVSAMYTDPNHLKVSDPGQIDG NMVFTYLDAFHPDKIKVAEMKAHYQRGGLGDRACKNELEMCLQELIAPMRERRATYIQDK GMLMAMLKKGSEQAHEVTQQTLREVKQGLGLPVF >gi|283548478|gb|GG730299.1| GENE 1274 1366476 - 1368083 969 535 aa, chain + ## HITS:1 COG:ydhS KEGG:ns NR:ns ## COG: ydhS COG4529 # Protein_GI_number: 16129624 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 532 1 533 534 763 67.0 0 MNKIAIVGTGPTGIYTLLALLKHQTPLSISLYEQSNEAGVGMPYSDEENSRLMLANIASI EIPPITSSYLDWLRQQSVEHLARYGVEHASLHDRQFLPRILLGEYFRDQFLSLVDIASQQ GFSIRVHESCQVKDVKATTDGVVIYSDHNDVEHVDLAVIATGHVWPDAQSASRTFFPSPW TGLMEAKIPACRVGILGTSLSAIDAAMAVVVQHGRFVSDDMQGIHFERNEGSEDLRIVLM SRSGILPEADFYCPLPYEPLTVVTADALKQCIADGAAGLLDRVFTLIAKEIALADPDWSK EIALSSLNADSFTDVWFAARKKHDPFRWAAANLEEVERNKRDKHTVAWRYAILRLHEAVQ EIVPWLDEEDRERFNNGLARVFIDNYAAIPSQSIRRILALREAGILNIRALGQDYQLRQQ EKMTVIHAQGEIHKFDVFIDARGQKALKIKDLPFPSLRDQLQSTNDEIPDVGDDYTLQAP DIVRGRIALAALPWLMHDQPFVQGLTACAEIGHCIAQAISRPATRLRRRLPYYEA >gi|283548478|gb|GG730299.1| GENE 1275 1368088 - 1368810 750 240 aa, chain + ## HITS:1 COG:PM1146 KEGG:ns NR:ns ## COG: PM1146 COG0725 # Protein_GI_number: 15603011 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Pasteurella multocida # 7 236 3 237 241 179 42.0 4e-45 MSASIPLFAAGSLRPALTPLINHFTRMTGINVKVEYGPAGLLRERIEAGEPCALFASANR SHPQHLLAQHNAIATHTFSWNQLGLVTNRSGEWLDLLLNPTLRIGTSTPGCDPSGDYTWA FFDKMDALEPGLGQQLRERAVPLVGGRDTVKIPPGELASAWILRQELADLFIGYAHYAKT LRALPGVRYVAIPTEYNIECEYQLAVLEASKDVLALVEFMLGHDGQEFLTAAGFLPLRGE >gi|283548478|gb|GG730299.1| GENE 1276 1368773 - 1369549 575 258 aa, chain - ## HITS:1 COG:PM1147 KEGG:ns NR:ns ## COG: PM1147 COG1120 # Protein_GI_number: 15603012 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Pasteurella multocida # 1 249 1 246 246 223 48.0 2e-58 MKSVALCVNQLTYGYRAPLFDPLTFCCRKGEVWAVLGRNGLGKTTLLDTLTGTRPALGGN IDNDGGIGIVAQHCHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQKRAAQALEQLHIAHL AACSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLARQQGCS VLFSTHDPLHALQIATHTLLLLPDGKWLAGPTDSIVTEENLSEAYGLPLRKLKVENYQTP FIAPLFSIRREEVKNQRR >gi|283548478|gb|GG730299.1| GENE 1277 1369546 - 1370550 1068 334 aa, chain - ## HITS:1 COG:PM1148 KEGG:ns NR:ns ## COG: PM1148 COG0609 # Protein_GI_number: 15603013 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Pasteurella multocida # 14 332 15 338 340 301 57.0 1e-81 MQLSNRILPQQPLLMAVVLLLGVSSLCLGQYPLSLREVFYHLTHYSDDAGIASQIVWTVR LPRILIALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPWLMMG STFLFGLTALILVYAIAALQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIV FWLLGSFATANWHKVLLLAIPVGVAATVLYQLRWRINLLSLNDKDAKALGVAVVPLRRSV LVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIAR TLMPAEIPLGIITALFGAPLFAFLLIRNSRRRKQ >gi|283548478|gb|GG730299.1| GENE 1278 1370537 - 1371592 1036 351 aa, chain - ## HITS:1 COG:PM1149 KEGG:ns NR:ns ## COG: PM1149 COG0614 # Protein_GI_number: 15603014 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Pasteurella multocida # 19 345 22 348 350 446 64.0 1e-125 MFTLRSFVLVCASMLFAFSAQADRTITDQLGRQVTIPDHVDKVVVLQHQTLNILVQLNAQ QDIVGVMSSWKKQLGPEFARFMPTIATLPTPGDLTHVNIESLLAIHPQVVFVANYAPAEM IQQIQNAGIPVVAISLRQDAAGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKPQAE ALIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAAS VKGARQVSLEQVLAWNPQVIFVQDRYPQVVTEIQNDPNWQGIDAVKNHRVWLMPEYAKAW GYPMPEALAIGELWMAKKLYPDAYKDVDVDARAQDYYQRFYRVNWQSDAAK >gi|283548478|gb|GG730299.1| GENE 1279 1371769 - 1373031 1326 420 aa, chain - ## HITS:1 COG:goaG KEGG:ns NR:ns ## COG: goaG COG0160 # Protein_GI_number: 16129263 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli K12 # 1 418 1 418 421 641 79.0 0 MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTIIDIEGNEYIDFAAGIAVLNTGHRHPR LVQAVEAQLQAFTHTAYQIVPYENYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKI ARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGISTA DSIKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPPEFVAAIRRICDEHGIVMIADEV QSGFARTGKLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGN PLSIAAAHAVLDIIRDEQLCQRAAALGEQLRASLTDAQAWCPELTEVRGLGSMIAAEFCD AATGEPSAAAAQRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALEIIKSATK >gi|283548478|gb|GG730299.1| GENE 1280 1373138 - 1374613 1185 491 aa, chain + ## HITS:1 COG:YPO2845 KEGG:ns NR:ns ## COG: YPO2845 COG1167 # Protein_GI_number: 16123040 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Yersinia pestis # 22 487 26 492 501 519 54.0 1e-147 MRSLAGDVIKQAFSQQTDEKLHRRLYAAICNCILEGSLKPATRMPPSRDLAGELTLSRNT VLRVYEQLQAEGYISARTSSGTFVTDSVLDNLDLRPRKETVSASLEDHTSLSARCLELLG HASASPRQWGAFVPGVPDVQHFPHRVLKKIQDRLARRLRPEFLTYDAAGGVSELKEALAD YLRTARGVRCSPDQILITEGIHQALDLVTRSLCNPGDNAWIEEPGYWGIKNILRINAVNF SAIPVDEQGMIPPDAAEPAPKLIFVTPSHQYPLGSVMSLSRRQQLLFRARETRSWIIEDD YDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKPLAAPLKKVHNDL YRGGHLLIQAALAEFIREGYYAAHIRKMRQLYGRRRQTLVELISRQLGENYLSAFSSNAG LHMILQLPGGSDDVAIAQQANAQGLLVRPLSRYYVNEEKRSGLLLGFASIEEHEMAAAFT RLVGIIRVNAA >gi|283548478|gb|GG730299.1| GENE 1281 1374657 - 1375865 1028 402 aa, chain - ## HITS:1 COG:PA2266 KEGG:ns NR:ns ## COG: PA2266 COG2010 # Protein_GI_number: 15597462 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Pseudomonas aeruginosa # 23 399 31 418 439 328 46.0 8e-90 MRNVTVLAACLFTASVSAAESDGEYIARISDCVACHTTEGGAAMAGGKKFPTPVGDIYST NITPDKAQGIGNYAYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDDDVQALYRYFMHD VTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPAATVESENTGDNAALVKRGAYLVEGP GHCGSCHTPRGMAMNEKAYSNADPEYLSGAMIDGWYAPSLRGSGMSEQALKSLLLTGKSK HAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSAKPEAGRTAAATVAWSSSAEAGKV TYNRYCSTCHGLEGKGTDDNAPSLNNNPLVMVDDPTPLYRVIAHGAETPTTRGSVSFKMP AYNGVLSDSEMRDVINYLRKSWGEGNGEVSQEDLAGVKKASH >gi|283548478|gb|GG730299.1| GENE 1282 1375869 - 1377761 1552 630 aa, chain - ## HITS:1 COG:no KEGG:EbC_23290 NR:ns ## KEGG: EbC_23290 # Name: not_defined # Def: twin-arginine translocation pathway signal # Organism: E.billingiae # Pathway: Arginine and proline metabolism [PATH:ebi00330]; beta-Alanine metabolism [PATH:ebi00410] # 1 630 1 630 630 1025 74.0 0 MAITRRDFLNGVAVTVAAGLTPLEWVRAAGKEHAFIDGSYYPPALTGLRGNHPGSFEMAH AVGREHKRFDLNALPIEEEYDLVIVGGGISGLAAGCFWRQLAGQNSRILILDNHDDFGGH AKRNEFTHSGKKLIGYGGSEAFQSPAHNFSPEVQKLMETLGVSVTRLKESFDVNFYPDWQ LSRGVFFDKKNFGETKIVSGDPGRAVSDDIPPNRLNGRNIEDFINDFPLNENDRKALIDL HVRPGDYLPGMTVDEKMEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISC SDARACALPGMEALGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMVPNALPGNTM EDSVLARLHYEKLDLPENTTRLRLNSTVINAVNVQDGVVVSYLRDGKMHRVRGKNTIMAG YNMLIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVK LDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMI RSQLQEMFGSTGFDNQRDIAAITVNRWAHGYAYYPNSLFDDMDKMPEIIERARKPVGRIT IANSDSDWGAYAHTAIDQAWRAVNELKEMG >gi|283548478|gb|GG730299.1| GENE 1283 1377794 - 1379224 1046 476 aa, chain - ## HITS:1 COG:SMc01656 KEGG:ns NR:ns ## COG: SMc01656 COG1012 # Protein_GI_number: 15966021 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Sinorhizobium meliloti # 28 472 16 473 475 423 45.0 1e-118 MKTLKHFINGQYVAGSSEDTFELVSPVDGETYALSPNAGAAEVEQAYSAAEAAFSIWKKS TPAQRQKALLRLADEIERNVERLVNAQSQETGQLRHFIEKEEIAASCDAIRFFAGAARCL EGKAAGEYSAGFTSTIRREPLGIVGQVTPWNYPFMMAVWKIAPALAAGNTVVLKPSDTTP VSTLLLAELAAPLFPRGAFNVVLGKANTGSLVVSNPQASLVSITGSVRAGLQVAASAAAN LTRAHLELGGKAPAVVFADADMDKAIAAIVTAGFFNAGQDCTAATRILVEQSIYAEFLEK LVQKTKSIKFGPPEDQDALYGALNSRNQLEQVKGFIDRLPPHAKIETGGHAGSGPGFYFE PTIVSGLHQHDEAIQHEVFGPVMTIQSFSGDEDALLKANDVEYGLAASVWTSNHGRAQRF CIDLDFGTVWINSHIPLCAEMPHGGFKKSGYGKDLSSYSLDEYTRVKHIMCDISVC >gi|283548478|gb|GG730299.1| GENE 1284 1379538 - 1380263 421 241 aa, chain + ## HITS:1 COG:CAC2546 KEGG:ns NR:ns ## COG: CAC2546 COG2186 # Protein_GI_number: 15895808 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Clostridium acetobutylicum # 7 234 1 231 231 65 25.0 8e-11 MITHAVIFAPIGQVSRSDQIVQRLSNAIITGLLEPKEQLPNETDLAKMMGVSHITIREAL NTLRANNLIHTVRGRNGGSFVCENIDGKNSPLHPFKAISTDYLSDLGEMHCAIISHSARL ASRRMTGADIAKFREFVEVLRKAKSPELMTQADMRCLLAIAASSHSARLANQELQVQAEW ASLVAILYRTDSIHAEIIALYSALADALAAHDEAQSVQLATQIIDTFTYYLIEKKLKYNS N >gi|283548478|gb|GG730299.1| GENE 1285 1380288 - 1380986 584 232 aa, chain + ## HITS:1 COG:no KEGG:Entcl_3825 NR:ns ## KEGG: Entcl_3825 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 229 1 229 230 298 62.0 1e-79 MSSSTSLSALIHKIDDITVSTVDSTVALARSIHEAISGMQKASAEVVLDPSVRSTVQQHI KRTLNDNHYCSGAGFASHIESTATTKEYWLLEWWYKKDNGLSQAHLDLDQATQQRLDFRT FEWFKHSPPAGKAYIHGPYVDYICNISYTLTSAVPVYYNDQFLGVAAVDLLVSQIEAELL SCAHPDYVILTNLENRIIFSSWPRFRVGELLSPANSTVVYQSDYFILYHYQN >gi|283548478|gb|GG730299.1| GENE 1286 1381007 - 1382488 1516 493 aa, chain - ## HITS:1 COG:PA1147 KEGG:ns NR:ns ## COG: PA1147 COG0531 # Protein_GI_number: 15596344 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Pseudomonas aeruginosa # 17 474 20 485 496 197 30.0 5e-50 MEQTPDKKNDNFQKDGKEQFNRSIGLISNFALGFTYLSPLTAVYSLFALAVTLAGPPAVW WILIVACGQLLVALVFGEVASQYPITGGLYPWARRLWGKKYAWIAAWIYLWALVVTITSI AEYTSTFVESLFLYGQTPATMLLTSVLLLLLMMAVNMSGTKNLARVAKIGFWCEIVSVIA LGIYLLIFHRSQPFSVIFDSMGVLAQDGSYSTAFMSAALMGLFMFFGFEACGNVAEEVQN PSKKIPVAMILSIVFGAISAIISVMGYLLASPNLVSIVNGKTSDPIPAILNEALGETGAT VFIIVAIVAMLSCILSLQAALSRLIFSFSRDRMLPGSEWMSKISKNGVPDNAMVVSCLLP VIICVWVYFQPDNLSRITAFAVIGIYISFQMVVLAALRQRLKGWKPAGEWTIGGWGVFVN VLALAYGVCGIWLLAQPADSSDFIDRWTVLFGLAIVVGSGLIYMFLTRPFGRSAAPENDA IAYANKLNMGQDN >gi|283548478|gb|GG730299.1| GENE 1287 1382788 - 1383690 680 300 aa, chain - ## HITS:1 COG:MK1607 KEGG:ns NR:ns ## COG: MK1607 COG0329 # Protein_GI_number: 20095043 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Methanopyrus kandleri AV19 # 6 243 4 243 300 104 28.0 2e-22 MTTVAQIQGVNPIVALPFTSQGDVDFTSFRRLLAHLSGVGVNGLTLFGIASEFPKLDDSE RLQLAEIFIADLAGKGVFRALSVTDHSTDLAVRRARRYQSMGADALMLLPPFFLQPSLAA VQAHISAVLEAVTIPVMVQYAPGETGFPVSPTQLAEVAKRYPHAVFKIECNPPVDYTREF LQQAPEAHVLNGYAGLYMLQMLGVGGKGVMPGCSFSEIYVRIYRHWLAGEYQQAAQLHEA LLPYIQRWMQHCEYIIQVEKTILQRRGIINDDYCRKPGWSLTNEDVKHIDSFISRFSLLA >gi|283548478|gb|GG730299.1| GENE 1288 1383690 - 1385402 1313 570 aa, chain - ## HITS:1 COG:MA3373 KEGG:ns NR:ns ## COG: MA3373 COG0129 # Protein_GI_number: 20092187 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Methanosarcina acetivorans str.C2A # 19 564 6 552 553 457 46.0 1e-128 MSSCGSGCAGCGGEHFNPILSGDDGALKRALYKSMGHTDAQLRRPVIAVVNSYTNATAGH ANLNELTAHVLKGIDEAGGVGMVFGTIAPCDGIAEGHLGMRYILAAREIIASSIEVMMRA HRFDGMVLLGSCDKIVPAMLMAAARLDIPAILVNGGPMYPAEYKGKHWDGNIVTEAIGWK RRGEIDEAEFRHIEDIAEPGHGSCTMYGTANTMCCIAEVLGMSLPGSSMLPAISRERRDC AYATGMTAVDLVKRGVNARQIITRASIRNAMAYLLATGGSTNAILHLQAIYYEAELGHLP LSEFDALSHQVPLVASLYPASEYDMIDFWQAGGVAAVEKEIANLLDLNCLTVNGQKKGEW LMDVPSTRRPDVIHTLAIPVRNESGVAVLHGNLSPMGCVVKPAAVPEHLMVFTGPAVVFN SEDEAVESILSGDIQPGSVLVLRYEGPKGGPGMPEMYKPMKFLEGMNLSDSCALITDGRF SGSNRGLFVGHISPEASDGGVLALVETGDSISIDIPQRTLTLNVADTILAERQQCCQLVH KEVPRGFLRLYRRWALPAAQGAVLADKEDL >gi|283548478|gb|GG730299.1| GENE 1289 1385399 - 1386769 1046 456 aa, chain - ## HITS:1 COG:RSc2352 KEGG:ns NR:ns ## COG: RSc2352 COG0477 # Protein_GI_number: 17547071 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 11 435 24 441 442 417 53.0 1e-116 MNTRTLDTENKNAVYRKVTRRLIPFLILCYFFAYLDRVNVGFAKLHMQDALNLSDTVYGI GAGIFFIGYFIFEVPSNLLMQRFGPRFWIARIMASWAVLSALTVFVTTPTQFYIVRFLLG VAEAGFFPGIVYYLTLWFPSWRSARTLGLFILVTPLSTIIGSPLSGLILKMFEGVGHLHN WQWLFLVEAIPSFLLAFVVLRYLDNDVKSARWLSNDEKALIEQDLQKDQLDKVAANAGMP QHSLSAMFRNRFVWLLALIFFSFNIGYYGINFWLPSIIKSSGVQDDFAIGLLAAVPYIFG AACMLWNSRHSDLKQERRWHIAIPAIVGAIGLTFSALNEGSTFWMMAWICVAMSGTLSLI PTYISLPGTLLSGTAAAAGIALVNSIGNLAGFFGPTVLGWLKDNTGSTSSGLYILAGFLV LCAPLIFLIPARLINPRDRQVLKTTENNVSTKRGHI >gi|283548478|gb|GG730299.1| GENE 1290 1386798 - 1387451 438 217 aa, chain - ## HITS:1 COG:BMEII0358 KEGG:ns NR:ns ## COG: BMEII0358 COG0800 # Protein_GI_number: 17988703 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Brucella melitensis # 10 213 7 208 210 159 40.0 5e-39 MDSFDFASLWQKTPLPMIAILRGLTPEEAPQIGDVLLEAGFTWLEVPLNSPRALESISLL RERVGMRAIVGAGTVLTAEQVDSVVDAGGQVIISPNMNPSVIRRSRERGAISLPGVATPS EAFTALDAGASGLKFYPAEMISPDILRAMCVVLPPHVVCMPVGGIAAETQQLQSWCRAGA KGFGCGGGLYRAGADSEQVRHNALAYAQAWQRVTSRA >gi|283548478|gb|GG730299.1| GENE 1291 1387438 - 1388343 568 301 aa, chain - ## HITS:1 COG:STM3829 KEGG:ns NR:ns ## COG: STM3829 COG3734 # Protein_GI_number: 16767114 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-galactonokinase # Organism: Salmonella typhimurium LT2 # 1 289 1 286 292 178 39.0 1e-44 MEREWIAIDWGTSNFRAWLLAGNDVLDKRSASAGLLHVEPGRFDATLKTLLSEWVAESTP MIVMAGMVGSQQGWHEVDYCPLPAGADSLLARRKTFTTSWGSDAWIVPGLCKSASGDMPD VMRGEEIQLLGLSLLEEIDNFQAILPGTHSKHVRMQQRQIVDFSTYMTGELYQVLISHSI LGRGLPDAAPDDKAFLLGVDVSRRHAALSQLLFSARTLRLSGDIPAESVGDYLSGLLIGL EFTPDNTGPVWLVGSAALTRRYQLAANVFGIQTCCIDGDRCFIAGMQSLQQRLTEKQNGQ F >gi|283548478|gb|GG730299.1| GENE 1292 1388536 - 1389267 602 243 aa, chain + ## HITS:1 COG:mll7079 KEGG:ns NR:ns ## COG: mll7079 COG2186 # Protein_GI_number: 13475898 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Mesorhizobium loti # 7 228 26 245 268 126 38.0 3e-29 MTTSLATISETITRDLAMKIIRGTLSDGDMLPGENELAVQYSASRTSVRNALHVLSAKGL LSIQAKRRSTVNPRELWSYLDTDVLGWMEEVGISPDVAEQLVVTRLMFEPNAAVLAAANA TARDLAAIEEAWTLMSRGQQQDQVALFEEGDLAFHTALLKSCHNPFLMSIGNALSAAMML SFKQTQESSARETEHAVEQHRLLLEAIRLRQGVTARECMRDIILSAANRHLWATLPEKYA HLI >gi|283548478|gb|GG730299.1| GENE 1293 1389361 - 1389501 175 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEIDLDNLVFDGLEEAQERNAERLEDADKKAQEIIADNDCGDACKI >gi|283548478|gb|GG730299.1| GENE 1294 1389553 - 1390446 596 297 aa, chain - ## HITS:1 COG:YPO2807 KEGG:ns NR:ns ## COG: YPO2807 COG0583 # Protein_GI_number: 16123005 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Yersinia pestis # 1 296 1 296 297 377 62.0 1e-104 MLRDNFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAP TEAGERLINSISPRFDDIETELLALTDVRQRVAGNIRLTLGEHALQSTVWPALEPFLQAY PDVNVEMTLDNSLTDIVAGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPAYFSRHGK PLTPHDLQKHNCINLRMPTLGGLYAWEFSKRGQDLRIRVEGQLIFNNLPPRISAAIAGIG LAFVPEDSVEQAVADGALEKVLEDWCEPFQGYYLYYPSRRQHTAAFAQLIEALRYTG >gi|283548478|gb|GG730299.1| GENE 1295 1390657 - 1391490 947 277 aa, chain + ## HITS:1 COG:PA2204 KEGG:ns NR:ns ## COG: PA2204 COG0834 # Protein_GI_number: 15597400 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Pseudomonas aeruginosa # 13 274 7 264 268 270 53.0 3e-72 MMATKIHSAKKTLLALSVLLASGISASQAQADQLADIKAAGVVKVATFDANPPFGSIDAK THKIVGYDVDFAEALAKSLGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVID FSVPYFVTGQQFLVPAKSPDKLDEYSKARIGAVKGTTGEQALHQRFPQSRVLAYDDIPLA LTALRNGNVQAITQDSTILAGLLGGAPDKADFKILPDLLSKEEIGVGVKKGEPALLKAVN DELLKLESTGQAAKIYDVWFGPETKNPQPRTFKIEAR >gi|283548478|gb|GG730299.1| GENE 1296 1391492 - 1392310 308 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 38 241 20 223 223 123 35 4e-26 MLTALFHRCAASATDFAHLRQASVELRDVIKQYGPHTVLNGVSLSVEPGEVVTILGPSGS GKSTLIRLINQLESLSGGEIYIDDKPIGQLRGAALRQLRSRIGFVFQQFNLYSHLTALQN IALALEYVHGWNKTEAKRRALELLDQVGLAEKADAYAAQLSGGQQQRVAIARALASSPQI ILFDEPTSALDPETIGEVLQVMKNLAHSGITMIVVTHEMHFAREIADRVVFIDGGDILEV APPEDFFTRPQHPRTQRFLKKVLDPLHQELPL >gi|283548478|gb|GG730299.1| GENE 1297 1392310 - 1393095 420 261 aa, chain + ## HITS:1 COG:YPO4110 KEGG:ns NR:ns ## COG: YPO4110 COG0765 # Protein_GI_number: 16124218 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Yersinia pestis # 2 223 5 224 245 154 41.0 2e-37 MHAMDWQGVLSGQPLQWIISGFLTTLWVTLAGVVLATLFTILLLSLRLTGNRFAKAVVGV WVSVFRNTPLLVQLMFWYFAAWNWLPREMITFINAEHPWSVLPGDVWWLTPEFLCSAWGL GVFTSAFLIEEVSSGLQAVSGGQREAAVAQGFSAWAILRHILLPQGLANAWQPIVGQYLN LMKLSSLASGIGFAELTYQVRQIESYNAHALEAFAVGTALYLLTGIVLDILLTRLGPKPA SGHPFRVRTPPFSFRSIQHDR >gi|283548478|gb|GG730299.1| GENE 1298 1393085 - 1393762 651 225 aa, chain + ## HITS:1 COG:YPO4109 KEGG:ns NR:ns ## COG: YPO4109 COG0765 # Protein_GI_number: 16124217 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Yersinia pestis # 4 223 2 224 251 151 41.0 1e-36 MIANISVITDNLDYLLWGRATEGQPGGVLLTMLMAIGAALLALPGGIALACCAWRFPGAV RNGLFIWAGFIRGIPLIFVIFWMWYLLPMLTGSDLPGAVTVTLALAWFTAASVMHSVYAG ISALPGGQYEAAVVQGFHPFQALRLILLPQVLRNVMPSLTGIFIGLLKDTSLAFIVNVPE LTTVAGQVNSRVQIYPAAIFIFTGLVYYLLCFSLEKITRRRFALR >gi|283548478|gb|GG730299.1| GENE 1299 1393772 - 1394584 350 270 aa, chain - ## HITS:1 COG:no KEGG:CKO_01694 NR:ns ## KEGG: CKO_01694 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 270 1 270 270 373 71.0 1e-102 MMITRNDLRAWRVGPVMYRWFLRAFPAGGCYADVHRALQREGYIDWANSLVEYGWSKWRS EEGFVQQDIRAMGNLSCAQTAGGSNRPLASAEDNVSFGCADDNIKIASAGYAAQIASAGY SVHIGCVGYNAHIGSSGDRGRIAVAGNSARISCVGDGTRIASTGTRVRISSLGDRNRIAS SGDLAQLACFGAESKIANCADNIHIIASGENAVVASTGAVDSIILGPGGCAALAYHDGER MRFALAVEGENNIRAGVKYRLNEDHQFVEC >gi|283548478|gb|GG730299.1| GENE 1300 1394588 - 1395373 571 261 aa, chain - ## HITS:1 COG:ECs2377 KEGG:ns NR:ns ## COG: ECs2377 COG4117 # Protein_GI_number: 15831631 # Func_class: C Energy production and conversion # Function: Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) # Organism: Escherichia coli O157:H7 # 1 261 1 261 261 391 77.0 1e-109 MNASQNAEQFHAQLAQYVPMFSPDYWPVWLVIAGLMLVGMWLVLALHAMLRFRAAHKASA GHGEKVYLYSKAVRLWHWSNALLFLLLLVSGLVNHFSAVSASVMKSLLTVHEVCGFLLLA CWIGFVLINLIGGNGHHYIIQRQGWIGRAQRQTRFYLFGIMQGESHPFPASTRSKFNPLQ QAAYVAVMYGLLPLLLISGLLSLYPSVVGDLFPGVRYWLLQAHFALAIISLFFIFGHLYL CTTGRTPGETFKCMVDGYHRH >gi|283548478|gb|GG730299.1| GENE 1301 1395370 - 1396038 400 222 aa, chain - ## HITS:1 COG:ydhX KEGG:ns NR:ns ## COG: ydhX COG0437 # Protein_GI_number: 16129627 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 222 18 239 239 410 86.0 1e-114 MSFTRRKFVIGMGTVIFFTGPGQNLLASPRSTQGVRYVMIHDESLCNGCNICARACRKTN HVPDQGSRLSIAHIPVSDNDNETLYHYFRQSCQHCDDAPCIEVCPTGASWRDENGIVRVD KSSCIGCSYCIGACPYQVRYLNPRTKVADKCDFCAESRLAKGFPPICVNACPEHALIFGR EDSPEIQTWLRENKYYEYQLAGAGKPHLYRRFGQHLIKKENV >gi|283548478|gb|GG730299.1| GENE 1302 1396103 - 1396768 529 221 aa, chain - ## HITS:1 COG:no KEGG:CKO_01697 NR:ns ## KEGG: CKO_01697 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 17 221 12 214 214 283 72.0 4e-75 MTNVSNVLAPTEALPDEVDSQKRQWLQAFHSPAEQVNAPQVTEPASPESIVAEFIRQHSA SGQLVARSLFLLPPYSVPETDLTALLDTLCQGANEADITCVHGAEETYFYSTQTMTANYA SMCLQVMENDICRAIAEAVRFDCQTYPRPYKVAMLMQPPYRFESGQVAAALSAMETHPDY ADIRTVESSNAEPYLFSERFMSYGKAYGLCEWFEVEQYQNP >gi|283548478|gb|GG730299.1| GENE 1303 1396779 - 1398881 2138 700 aa, chain - ## HITS:1 COG:ydhV KEGG:ns NR:ns ## COG: ydhV COG2414 # Protein_GI_number: 16129629 # Func_class: C Energy production and conversion # Function: Aldehyde:ferredoxin oxidoreductase # Organism: Escherichia coli K12 # 1 700 1 700 700 1399 92.0 0 MANGWTGNILRVNLTTGNITHEDSSKFKKFVGGMGFGYKIMYDEVPPGTMPFDEGNKLVF ATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDAIIIEGKSASP VWISIKDDKVSIEKADFLWGKGTRATTEEICRITSPETCVAAIGPAGENLVPLSCMINSR NHSGGAGTGAVMGSKNLKAIAVEGTKGVNIADRKEMKRLNDYMMTELIGANNNHVVPSTP QAWAEYSSPNSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKY TVKMSGCHSCPIRCMSQLNVPRVKDFGVPSTGGNTCVANFVHTTIFPHGPKDFDDKDDGR VVGNLIGLNLFDDYGIWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDPNF IKDFYYRLAHRVGELSHLADGSYAIAERWGLGEEYWGYAKNKLWSPFGFPVHHANEASAQ VGAITNCMFNRDCMTHTHINFIGSGLPLKLQREVAGELFGSQDAYDETKNYTPINAAKIK YAKWTLLKVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLDLEAKFFQAVTGDETTQASLDL AAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPTIPAFTEGTDKMDREDMRQSLT MFYQEMGWDPELGCPTRETLNRLGLEDVAADLAAQDLLPA >gi|283548478|gb|GG730299.1| GENE 1304 1398993 - 1399619 216 208 aa, chain - ## HITS:1 COG:ECs2381 KEGG:ns NR:ns ## COG: ECs2381 COG0437 # Protein_GI_number: 15831635 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 208 1 208 208 345 92.0 3e-95 MNQVDRPFLDCGLTRLEFLRISGKGLAGLTIAPALLSLFGCKQEDVDSGTVGLINTPKGV LVTQRARCTGCHRCEISCTNYNDGAVGTFFSRIKIHRNYFFGDDGVGSGGGLYGDLNYTA DTCRQCKDPQCMKVCPIGAITWKQEDGCIAVDHKRCIGCSACTTACPWIMATVNTETKKS SKCVLCGECANACPTGALKIIEWKDITV >gi|283548478|gb|GG730299.1| GENE 1305 1400098 - 1400307 242 69 aa, chain - ## HITS:1 COG:no KEGG:ROD_13791 NR:ns ## KEGG: ROD_13791 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 69 1 69 69 110 91.0 3e-23 MGNQTKDDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTTLANQRVKRSELEKQAI ETVIKALAG >gi|283548478|gb|GG730299.1| GENE 1306 1400400 - 1400984 456 194 aa, chain - ## HITS:1 COG:STM1387 KEGG:ns NR:ns ## COG: STM1387 COG4566 # Protein_GI_number: 16764737 # Func_class: T Signal transduction mechanisms # Function: Response regulator # Organism: Salmonella typhimurium LT2 # 1 193 1 193 206 286 77.0 2e-77 MAIIHLLDDDIAVTQACAFLLESMGYEVCCWNQGDTFLAEANLHQVGVLLLDMRMPVMDG HAVHEAMRQRESTLAVVFLTGHGDVPMAVEQMKRGAVDFLQKPVSAGPLQAALEHALQIS DVAFARQEIVACYQMLTPKERELAQWVAKGLMNREIADAMNIAVRTVEVHRARVMEKMRA GSLAELVNRLQRIQ >gi|283548478|gb|GG730299.1| GENE 1307 1400959 - 1402740 1537 593 aa, chain - ## HITS:1 COG:STM1386 KEGG:ns NR:ns ## COG: STM1386 COG0642 # Protein_GI_number: 16764736 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 593 1 592 592 887 76.0 0 MGRNVVKCLTVLASLWMLSGAVRAQTWNIGVLAMRGEVSTRHHWQPLETLLNQQIPGEQF HIQPLDLHQMQEAVNRGTVQFVVTNPAQFVQLNSRSALRWLASLRSTRGGKAASNVIGSA ILVRRDSGITSAHDLIGKTVGAIDAQAFGGYLLGYKALSDAGLRPERDLRLTFTGFPADA LLYLLREKAVQAVIVPVCLLENMDEEGLIHKADFRIVLDRPTSIPCLTSTPLYPDWSFAA LPAVSDELADRVTRVLFNAPQNATFRWGAPASTREVEALLRAVRQHPQQRQLWLDVKSWF IQHRLAMGAIAVALLVLTLNYIWVMLLVRRRGRQLERNSILLRKQEQALETARQMSVLGE MTSGFAHELNQPLSAIRHYAQGCLIRLRGQDAQHPLLSALEHIDAQAQRGADTLRNLRLW VSQAQGNPVMTDDWRAINVHDAIYHVWQLLRMPQQFPEVALQTRVNKTLTLTLPSVLLEQ VLANLVLNAAQAGALTVWFSALCEDEGMSIQVQDNAGGIDEAQLYQAFQPFMTTRKEGMG LGLAICQRLVRYANGEIDIKNQQAPDGKAGVVVTLHFKQNREAGRSGNHSSAG >gi|283548478|gb|GG730299.1| GENE 1308 1402919 - 1403653 535 244 aa, chain + ## HITS:1 COG:STM1385 KEGG:ns NR:ns ## COG: STM1385 COG0437 # Protein_GI_number: 16764735 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 1 244 7 250 250 450 90.0 1e-126 MDSSKRQFLQQLGVLTAGASLVPLAQAQFPFSPERHEGSLQHRYAMLIDLRRCIGCQACT VSCAIENQTPQGEFRTLVNQYQVQITGQHSVTNVLLPRLCNHCDNPPCVPVCPVQATFQR KDGIVVVDNTRCVGCAYCVQACPYDARFINHETQTADKCTFCVHRLEAGLLPACVESCVG GARIIGDINDPHSRISQMLREHHDAIKVLKPENGTAPHVFYLGLDEAFVTPLMGRAQPAL WQEV >gi|283548478|gb|GG730299.1| GENE 1309 1403654 - 1404676 983 340 aa, chain + ## HITS:1 COG:no KEGG:STM1384 NR:ns ## KEGG: STM1384 # Name: ttrC # Def: tetrathionate reductase complex subunit C # Organism: S.typhimurium # Pathway: Two-component system [PATH:stm02020] # 1 340 1 340 340 447 76.0 1e-124 MNHSLIIEEVLAHPQDVSWLPWAVQYFFFIGIAACAALFACVLHWRKQETPELENLTLLI ALTCAITAPLALTADLHQTARVWHFYAYPTPWSWMPWGALFLPLFTGFLGLWFLAQHVKQ LTLKSYSVTKWLAVGSALSAIGLLVYTGREVSVVQARPVWFSYAFPVAMFLSALQTFLAL LIAATKSEGSVLRKLAWGQIIALVALAIVVAIWASGNTLSGTAIRQWLDVASSARHYAFG WVALWLVSLGLCGLVLRYPLLRPLRILLAFSAMALCWLMRWTLLIQVQTVPKFNAQFNPY TLPGGTDGWLAIVGTFGLWIALIVIIREALSAIARRIQHG >gi|283548478|gb|GG730299.1| GENE 1310 1404669 - 1407734 2714 1021 aa, chain + ## HITS:1 COG:STM1383 KEGG:ns NR:ns ## COG: STM1383 COG0243 # Protein_GI_number: 16764733 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 1021 1 1020 1020 1759 83.0 0 MANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRALDGLLDGTSGKITRDRIFGNSLIPEAN AQPHWQQNPQQVISMTQCFGCWTQCGVRVRVDSEQGKVLRIAGNPYHPLSHEHHIDSSVP FATAMAQLAGESGLDARSTACARGATLLEGLYSPLRILEPMKRVGKRGEGKWQRISFEQL ITEVVEGGDLFGEGHVDGLRAIHDPNTPLDARHPGFGPKSNQLLVTNTSDEGRDTFLRRF ALNSFGSKNFGAHGAYCGLAYRAGSGALMGDLDKNTHVKPDWDNVEFALFMGTSPAQSGN PFKRQARQLASARLRDDFRYVVVAPALPLTTVLADDRGHWQPVRPGSDSALAMGMMRWII EKQRYNADYLAIPGVQAMQLAGEKSWSNATHLVITDEIPNLAGQHLTLAHLSANAAQEPV VINAAGEIVAASSCQRAQLFVTRAVTLADGQTVTVKSSFQCLKESAEKLTLAQYSQQCGV SEADIIALADAFTRHGRKAAVVTHGGMMAGNGFYNAWSVMMLNALIGNLSLEGGVFVGGG KFNGATDGPRYNMDSFTGKVKPKGLSIARSKTAYESSEEYRNKVAAGQSPFPAKAPWYPF VAGQLTELLVSALEGYPYPLKAWISNMTNPFYGIAGLRGVAEEKLKDPARLPLFIAIDAF MNETTALADYIVPDTHNFESWGFSAPWAGVASKATTARWPVVKPATSSAADGQPASMESF CIAVAKRIGLPGFGDNAITDPQGNRYPLNRAEDYYLRLAANIAFMGKAPVAEAQPEDITL TGVQRIMPVIKQTLKADEISRVAFVYSRGGRFAPASSGRVEDRVGNAWEKPLQIWNADVA AHRHAITGERYSGCPAWYPSRLSDGRAVEELFPEQEWPLKLISFKSNTMSSATAVIPRLH HLKPVNLVALNPQDGQRYGLAHGDIVRITTPGGQAQAQISLLHGVMPGVIAIEHGYGHKE MGAAQHTLDGEPMAFDAQIRSGINLNDLGFADPTRQVTNTWLDWVSGAAVRQGLPARIER V >gi|283548478|gb|GG730299.1| GENE 1311 1407827 - 1408639 1172 270 aa, chain - ## HITS:1 COG:SA0771 KEGG:ns NR:ns ## COG: SA0771 COG1464 # Protein_GI_number: 15926499 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 25 267 33 271 273 241 54.0 9e-64 MKKSLTLLAAATLSALSFAAWADTLTVGASNVPHAEILEQAKPILAKQGIDLEIKPFQDY ILPNTALAGREIDANYFQHIPYLNSVIKDHAGDKTYDFVSAGAIHIEPIGIYSKKVKSLK DLPEGGKVIMRDAVSEEGRILSIFEKEGVIKLKPGVDKVTARISDIVENPKKLKFLPNVE AALLPQMYNNDEGDAVVINANYAIDAGLDPVKDPIAVESGENNPYANIITVHRGDEKKKD IAALVNVLHSKEIQDWIRTKYKGAVIPVNN >gi|283548478|gb|GG730299.1| GENE 1312 1408661 - 1409329 854 222 aa, chain - ## HITS:1 COG:BH3480 KEGG:ns NR:ns ## COG: BH3480 COG2011 # Protein_GI_number: 15616042 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Bacillus halodurans # 5 222 1 218 218 261 67.0 8e-70 MAEELFPHLKWDQLLAATQETLYMTALSGVATFVLGVALGLALFLTARGGLFPNRAVYSA ISLVVNIFRSIPFIILIVLLIPFTKAMVGTILGANAALPALIVGAAPFYARLVEIALREV DKGVIEATRSMGARLSTLIFRVLLPESSPALVSGITVTLIALVSYSAMAGVIGAGGLGNL AYLEGFQRNHSDVTLVATVTILLIVFIIQLCGDVITSLLDKR >gi|283548478|gb|GG730299.1| GENE 1313 1409322 - 1410344 955 340 aa, chain - ## HITS:1 COG:lin2514 KEGG:ns NR:ns ## COG: lin2514 COG1135 # Protein_GI_number: 16801576 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Listeria innocua # 1 337 1 338 340 382 57.0 1e-106 MIVLKNISKVFTPGRLAITAVDNVNLTVEQGQIYGIIGYSGAGKSTLIRLLNGLEKPTSG SVTINGHDISAARGESLRQARLKISMVFQHFNLLWSRTVSENIAFSMQIAGAPKVSINAR VAELITLVGLSGRENAYPSQLSGGQKQRVGIARALANNPDVLLCDEATSALDPQTTDQIL DLLLDINRRFKLTIVLITHEMHVVRKICDRVAVMENGKVVEEGDVLNVFTHPQQPITRQF VRQVSQYAEEDEFNPQLASELGGVVIKLTFTGQRTHRPVVGELTLRYGLPFNILHGKMTQ TAHGAFGQLWVQVVATEQQLNNILADLRHSDIDGEVILHG >gi|283548478|gb|GG730299.1| GENE 1314 1410853 - 1412079 893 408 aa, chain + ## HITS:1 COG:STM1382_2 KEGG:ns NR:ns ## COG: STM1382_2 COG0524 # Protein_GI_number: 16764732 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 101 407 1 307 308 476 83.0 1e-134 MFKEERRATILNLLIKDHSVSVSKLAVLFNVSQETIRSDLCYFQKTGMLVRCYGGGIVNR QALNKLITENKIDISGTISTPANKDIRLSKEEAKMSGKVCILGSFNIDVSATVPWLPQSG ESILASQFGFYPGGKGANQALAANNAGADVHFIFKVGKDQFSAFALNHIIQSGINSYSAY QTDEAPTGSALIYVSAEDGDNIIAIYPGANMTLSKQEINEQRGYISEANVLLMQLETNID AIEEFVRLGKSENKTIILNPAPYTKNIHHLLSSIDILTPNETEASFLSGITITDIDDAQK AGNIILQSGVGKVIITLGAQGSLLCERHRTLFIPAWSAVVKDAAGAGDAFNGALATSLAR KSDLVSAIQYASAFASLAVEQEGASSMPQHEQVLHRMRTQSHDIVNIK >gi|283548478|gb|GG730299.1| GENE 1315 1412092 - 1412829 641 245 aa, chain + ## HITS:1 COG:STM1381 KEGG:ns NR:ns ## COG: STM1381 COG5426 # Protein_GI_number: 16764731 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 433 80.0 1e-121 MKILFIGESWHIHMIHSKGYDSFTSSKYEEGADYLLSCLRQQNITIDYMPAHIVQTRFPQ TVEELDVYDAIVISDIGSNTFLLQNKTFYQMNIIPNALALIKEYVANGGGLLMIGGYLSF TGIEAKANYKNTLLADVLPVEMLDYDDRVEIPQGCSPINTDEQHVITQNLTQWPPLLGYN KLRAKANSTTLVKINDDPLLVLGKYNKGKVGCFASDCAPHWGSPQFMQWEHYTPFWCNVL HAIKK >gi|283548478|gb|GG730299.1| GENE 1316 1412891 - 1413784 458 297 aa, chain + ## HITS:1 COG:STM1380 KEGG:ns NR:ns ## COG: STM1380 COG0596 # Protein_GI_number: 16764730 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 1 296 1 296 297 438 71.0 1e-123 MQNHYKYGEMFCDGILTSYRIYGDPASPLMPLIILHGGPSGGFDYLLNYHQLSTDGRMVV FYDQYGCGRSTHFPLADASFWTIERYLQQLHQLICHLNIGLRYALLGHSWGGMLAAEHAC RQPEGLGGVIYASSPASIPLWQSEVLRLFKALTAGADAMPDETIMQAKIYQHPPEQLIAY YARHVYSLRQEPLHIQRANAQFAADPTAYHILWGANELAVNGTLAQWDITGSLHKIRCPG LVLRGEHDQATSQVVQPLITQITHCRSVTIPDSSHNPHEENTEPCLTAVREFLRGLD >gi|283548478|gb|GG730299.1| GENE 1317 1413805 - 1415148 1155 447 aa, chain + ## HITS:1 COG:STM1379 KEGG:ns NR:ns ## COG: STM1379 COG0531 # Protein_GI_number: 16764729 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 1 447 1 447 447 691 88.0 0 MSKIKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVYIIGAIAMFFTAHSYST LSKHISSSGSAYTYAGVCINPAVGFLTGWILLLDYLLFPTLVAVLGGVAVHAILPQIPIW VWPLIYVAIGTGINYLGIQQTAKFDKLLVFIQLGILAIFVVLILRLLMLDSSHVSFSFKP FFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEGGGKAVSKATLLALILATVLFII VVTFAAFATGKVDSFADGTETNEAFFTIAGNVGGIWLKVAFSIIVAFVCAVGNIITAQTA VSRVLFSMGRDKMLPTFLAHVHSKRKTPDYAILFTGAVTLFLSYLFSGKIESISTLVNFG ALFAFFVVNLCVFVLYNVKMKEHRRLFPHVISPVLGMVVIGYVCMNMNIHALTLGIIWSV IGLAVLWYRKAHKQDINIDLEGRKLLD >gi|283548478|gb|GG730299.1| GENE 1318 1415562 - 1416974 1653 470 aa, chain + ## HITS:1 COG:STM1378 KEGG:ns NR:ns ## COG: STM1378 COG0469 # Protein_GI_number: 16764728 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Salmonella typhimurium LT2 # 1 470 1 470 470 847 96.0 0 MKKTKIVCTIGPKTESEEMLTKMLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKK AAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNSEIVAVTYEGFTKDLSVG NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIF GCEQGVDFVAASFIRKRSDVVEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGI MVARGDMGVEIPVEEVIFAQKMIIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVAN AILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDFNNDSRKLRITEAVCR GAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNETTARQLVLSKGVVAQVV KEISSTDDFYRLGKEVALESGLAQKGDVVVMVSGALVPSGTTNTASVHVL >gi|283548478|gb|GG730299.1| GENE 1319 1417284 - 1417520 312 78 aa, chain + ## HITS:1 COG:STM1377 KEGG:ns NR:ns ## COG: STM1377 COG4238 # Protein_GI_number: 16764727 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Murein lipoprotein # Organism: Salmonella typhimurium LT2 # 1 78 1 78 78 103 98.0 8e-23 MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD DAARANQRLDNAATKYRK >gi|283548478|gb|GG730299.1| GENE 1320 1417589 - 1418593 952 334 aa, chain - ## HITS:1 COG:ECs2385 KEGG:ns NR:ns ## COG: ECs2385 COG1376 # Protein_GI_number: 15831639 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 537 85.0 1e-153 MKRASVITLMLIGAYSAIQAAWAVDYPLPQANSRLVGQNQTYTVQEGDKNLQAIARKFDT AAMLILEANNTIAPVPKPGTLITIPSQLLLPDAPREGIIVNLAELRLYYYPPGENIVQVF PIGIGLQGLETPVMETRIGQKIPNPTWTPTAGIRKRSLERGITLPPVVPAGPNNPLGRFA LRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFAQVRTGTPVRVINEPIKYS IEPNGMRYVEVHRPLSPEEEQNVQTMPYVLPAGFTQFKDNDAVDNSLVERALYRRAGYPV TVTAGQASVVSKGAEVKSARNGAPGEDAEVRATQ >gi|283548478|gb|GG730299.1| GENE 1321 1418717 - 1419133 415 138 aa, chain - ## HITS:1 COG:STM1374 KEGG:ns NR:ns ## COG: STM1374 COG2166 # Protein_GI_number: 16764724 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Salmonella typhimurium LT2 # 1 138 1 138 138 241 86.0 2e-64 MAALPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELDANDRCPANSIQGCQSQVWIVMR QHADGIIALQGDSDAAIVKGLIAVVFILYDRMTAQDIVNFDVRPWFEKMALAQHLTPSRS QGLEAMIRAIRTKAATLS >gi|283548478|gb|GG730299.1| GENE 1322 1419146 - 1420366 1142 406 aa, chain - ## HITS:1 COG:csdB KEGG:ns NR:ns ## COG: csdB COG0520 # Protein_GI_number: 16129636 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli K12 # 1 406 1 406 406 761 90.0 0 MTFPIEKVRADFPVLTREVNGLPLAYLDSAASAQKPNQVIDAEAEFYRHGYAAVHRGIHT LSAQATEKMENVRKLASLFINARSAEELVFVRGTTEGINLVANSWGSSNVRAGDNIIISE MEHHANIVPWQMLCARVGAELRVIPLNTDGTLQLEALPALFDERTQLLAITHVSNVLGTE NPLSEMIELAHQHGAKVLVDGAQAVMHHSVDVQALDCDFYVFSGHKLYGPTGIGVLYARD ALLQEMPPWEGGGSMIATVSLSQGTTWAKAPWRFEAGTPNTGGIIGLGAAIEYVTALGLA EISEYEQFMMRYALEQLADVPDLTLYGPDNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRT GHHCAMPLMAYYNVPAMCRASIAMYNTHEEVDRLVTGLKRIHHLLG >gi|283548478|gb|GG730299.1| GENE 1323 1420363 - 1421634 1071 423 aa, chain - ## HITS:1 COG:ECs2388 KEGG:ns NR:ns ## COG: ECs2388 COG0719 # Protein_GI_number: 15831642 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli O157:H7 # 1 421 1 421 423 671 81.0 0 MAGLANSSNVLQQWHHLFETQGETRSRHAQHHLQQMLRLGLPTRKHEDWKYTPLEGLTNS RFVSSISAITSAQCDALAPAIDAVRLVFVDGQFCPMFSDSVDGSGFDITVDDERQMLPTA IQPEVFLHLTESLSRSVTHILVKRNQRPAKPLLLLHITQGLTGDEVNTAHYRHHLELAEG AEATVIEHYVSLSELRHFTGARLTMNVAANAHLHHIKLAFENPLSHHFAHNDIHLSADAS AVSQSFLLGGAVLRHNTSTQLNGENTTLRLNSLAMPVKNEVCDTRTWLAHNKGYCNSRQL HKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEIYADDVKCSH GATVGRIDDEQMFYLRSRGIGQQDAQQMILYAFAAELTEALRDETLKQLVLARIAHRLPG GVA >gi|283548478|gb|GG730299.1| GENE 1324 1421609 - 1422355 854 248 aa, chain - ## HITS:1 COG:ECs2389 KEGG:ns NR:ns ## COG: ECs2389 COG0396 # Protein_GI_number: 15831643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, ATPase component # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 470 95.0 1e-132 MLSIKDLQVSVEDKAILRGLSLEIRPGEVHAIMGPNGSGKSTLSATLAGRDDYEVTGGTV EFNGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGEESLDRFDF QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPQLCILDESDSGLDIDA LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG YGWLSEQQ >gi|283548478|gb|GG730299.1| GENE 1325 1422372 - 1423859 1556 495 aa, chain - ## HITS:1 COG:ynhE KEGG:ns NR:ns ## COG: ynhE COG0719 # Protein_GI_number: 16129639 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Escherichia coli K12 # 1 495 14 508 508 986 95.0 0 MSRNTEATDDVNTWAGGHLNYKEGFFTQLKTDELAKGINEEVVRAISAKRNEPDWMLEFR LNAFNAWLAMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDETCASEPGAVQQTGANAFLS KEVEDAFAQLGVPVREGKEVAVDAIFDSVSVATTYRDKLAEQGIIFCSFGEAIHDHPELV KQYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCPMELSTYFRINAEKTGQFERTIL IADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKDAEVKYSTVQNWFPGDGNTGGILNF VTKRALCEGENSKMSWTQSETGSAITWKYPSCILRGDNSIGEFYSVALTSGHQQADTGTK MIHIGKNTKSTIISKGISAGHSQNSYRGLVKIMPAATNARNYTQCDSMLIGADCGAHTFP YVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAV EAQKLLAISLEHSVG >gi|283548478|gb|GG730299.1| GENE 1326 1423868 - 1424236 403 122 aa, chain - ## HITS:1 COG:ECs2391 KEGG:ns NR:ns ## COG: ECs2391 COG0316 # Protein_GI_number: 15831645 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 122 1 122 122 229 86.0 7e-61 MELHSGTFNPDDFTWRGLTLTPAAAAHIRELVAKQPDMMGVRLGVKQTGCAGFGYVLDTV RQPEKDDLLFETDGARLYVPLQAMPFIDGTEVDFVREGLNQLFKFHNPKAQNECGCGESF GV >gi|283548478|gb|GG730299.1| GENE 1327 1424642 - 1428115 757 1157 aa, chain - ## HITS:1 COG:YPO3984_2 KEGG:ns NR:ns ## COG: YPO3984_2 COG3468 # Protein_GI_number: 16124111 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Yersinia pestis # 658 1157 1 476 476 263 35.0 1e-69 MIGLLFSTSTEIAKAQTIADNTSTNVLAGYSSSSSTSDTPELFALNAGTITSPGALNIVT TGGNSEGVLAQSGGTVNLNGVSTITTSGGDSSGIKVDGTGSLVTSQGDLNITANGSSYGI YALNGGKVDVSTGTLNVTANNDASANGPYSAIEASGNGTSVIVNAGGLIQTSSLLPSGGG VNSSAVNASNGASIELNGTSSSKLNIKTVGDTAHGISMDANGVGTSVHGSNLAIATSGAN ANGVFVGDDFLLSDSTVTTSGTDADGIKFLGSNSTGVIQNSSIATSGATANGISVIAGGD SQLNGVSINTTGDESFGIYATSSGNVSSQGLLSVNSTGSGSSAIVAQDNSNVDVRDRFNI VSTGDDASAISATDSSTITLSGTGTIEKNSSSSIFTTSAIYAASGSSVSIQGTDAININT TGANIHGAYVDGSGDLNNPTSISLTNTKISTAGVGALGAYAIKEGATLNVVDSNINTKNS SAAGVMTRDGAIANISNSNILTESHISAAVRAVSGGKINVTDSALETKGNYSPGVSLEGG DVVLTNTTVNTTNSIQSPAILQNRGVSTLSMTGGELSSLAGESIYAIEGNGTIQLNEVNS TVNNGVFIQNTGAAALEVNADANSVVSGDAINTSSSTASLSLNNGSVWTGKAVDMTNLNI ANGSQWNVTGDSNSAAITLNSALINFQSSSVNDVKTITTNSFSGNNGTINFNTVLNEGDA NTVTDKIVVNGDAAGSHKININQIGGTGALTVNDGIKLASISGQDTSSVTLSKPVVAGAY EYLAYNGGQSGNGWYLRSTLEPTPEPTEEPTPNPTPEPTPNPTPNPTPEPTPNPTPAPTS EPSYNPSVPGYVIAPYLNRMYGYQTVGTLHERVGEQENIKKESNMPQGAWGRIGGGETKS NADRFNYDADTWFAQLGGDLYNNFDEDGTRVHSGVFATFGQVSTSAKDSVRGMYQGRSTT TGKINSKGYGVGAYYTSYFSNDVYVDTVAQYTHYRNEYNSIYGSDATQDGDGVTLSVEAG KPFKYTNGLYLEPQVQLMYQYLHLDATNDGVAYVKSTSDNSGLARIGGRLGYDSVKTSNA HPYLTANVLTNIGRSPDVTVSSVKFNQDYSDQWYEVGGGFTGDITKNASLYADMKYQHDF EGNMHGFAGNLGIRVNW >gi|283548478|gb|GG730299.1| GENE 1328 1429110 - 1429730 241 206 aa, chain + ## HITS:1 COG:no KEGG:XNC1_2312 NR:ns ## KEGG: XNC1_2312 # Name: not_defined # Def: hypothetical protein # Organism: X.nematophila # Pathway: not_defined # 1 201 4 202 210 87 27.0 3e-16 MMKPNDEMKLIISKWLSSGAARIIIKSEIGIERTLGVKPNNTDFVFLTEGAMDIRRTMDD LVFCTALAPYIMSGTDHPESEAYFYGEIRAHSVAYRIKKETALNLVEKFNLFKELWIVEK YKSQAIWRRDANLNGASVKVAIGELITVLSMLPPEFRKSISVYKFLQERTKYSKSTIMRV VNHYRDNGQLDIKNGILIEWIPKEKG >gi|283548478|gb|GG730299.1| GENE 1329 1429736 - 1430332 115 198 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833350|ref|ZP_06353091.1| ## NR: gi|283833350|ref|ZP_06353091.1| hypothetical protein CIT292_07382 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_07382 [Citrobacter youngae ATCC 29220] # 1 198 1 198 198 394 100.0 1e-108 MGFHIHTYCAYTRQGVLGLIDEIFKTSQPDEVIHIFDLIENPHPILLLNKIKNYMRITLD EPQKIIAICNKQTADFLRKFSILCITPTESILNWVDILKKAKAYTKWSAASIPELEHHYA SKPLTNKDFFILEHLCQGYSFSEISELSGLNAKIVYARLSKIKCEFNLERNNIHLAYAFI LESRTNYFHCSQQSNYHF >gi|283548478|gb|GG730299.1| GENE 1330 1430584 - 1431447 676 287 aa, chain - ## HITS:1 COG:YPO0799 KEGG:ns NR:ns ## COG: YPO0799 COG0583 # Protein_GI_number: 16121111 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Yersinia pestis # 2 284 6 289 302 233 44.0 2e-61 MAATVFNHICDLGSLSAAARALGLSRPMVSRYLDEMEKWAGARLIHRSSRRLTITPAGEE ALVKTRSLARISLDIAAASAAQIPAGTLRVACAHFTAMHILAPVLPDFLARYPQLRIEVE INNQPVSLVGERIDVAIRITDNPEPGTIARRLGDCESVLCASVDYLHQHGTPATIDDLTQ HNCLYYSGFAGKSWHFLNAQEQAISVAIKGNLSAGISSLLCESALAGMGIALVPEPEARE GLAQGKLVRLLPELQPKCLPIYGLYLSREHQPAGLRLLLDAISETMR >gi|283548478|gb|GG730299.1| GENE 1331 1431582 - 1432433 939 283 aa, chain + ## HITS:1 COG:VCA1049 KEGG:ns NR:ns ## COG: VCA1049 COG0491 # Protein_GI_number: 15601800 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Vibrio cholerae # 5 283 17 292 292 289 52.0 4e-78 MKVKTLALLLPLFSSSLFAAPLQLDVYNPQDKAIFPVSSTLVSGPKEAILFDAQFSTKDG EKLVQMIRASGKTLKAIVITSGDPDFYFGLQPIVNAFPQVKVLATPHVVEHIRATKEAKL QFWGPQMKDGAPTSLTVPQATTQTHFTVDGETLELRHPNDYAAYVWIPANRAIIGGTGVA SGIHVWTADTQSAEQRSAWRNVLGEMQNLQPTQVVPGHYIGERPTGDKAIRFTRDYLQSF EQALSANKGSAYVIKTMTAAWPGLADESSLELSAKVNSGEMKW >gi|283548478|gb|GG730299.1| GENE 1332 1432502 - 1432690 290 62 aa, chain - ## HITS:1 COG:no KEGG:SSON_1471 NR:ns ## KEGG: SSON_1471 # Name: not_defined # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 62 28 89 89 104 91.0 1e-21 MSTQLDPAQLAIEFLRRDKTDLSPAQYLKRLKQLELEFADLLTLSSTELKEEIYFAWRMG VH >gi|283548478|gb|GG730299.1| GENE 1333 1432768 - 1433178 436 136 aa, chain - ## HITS:1 COG:STM1366 KEGG:ns NR:ns ## COG: STM1366 COG2050 # Protein_GI_number: 16764716 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Salmonella typhimurium LT2 # 1 136 1 136 136 249 88.0 1e-66 MIWKREVTLEALNAMGEGNMVGLLDIRFEHIGEKTLEATMPVDHRTKQPFGLLHGGASVV LAESMGSVAGYLCTQGDQKVVGMEVNANHIRSAREGRVRGVCSAIHTGSRHQVWQIEIFD EQGRMCCTSRLTTAIL >gi|283548478|gb|GG730299.1| GENE 1334 1433175 - 1436231 2578 1018 aa, chain - ## HITS:1 COG:ZydiJ_1 KEGG:ns NR:ns ## COG: ZydiJ_1 COG0277 # Protein_GI_number: 15802099 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli O157:H7 EDL933 # 1 542 1 542 542 1056 92.0 0 MIPQISQAPGVVQLVLNFLQALEQQGFTGDTATSYADRLTMSTDNSIYQLLPDAVVFPRS TADVALIARLAAEPLFSSLIFTPRGGGTGTNGQALNQGIIVDMSRYMSRIIEINPQEGWV RVEAGVIKDQLNQFLKPYGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGI RAVLMGGDILDTQPMPVELAQTLGKSNTTIGRIYKTVFERCRDNRQLIIDKFPKLNRFLT GYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARLDITPLPKVRQLVNVKYDSFDSALR NAPVMVEARALSVETVDSKVLNLAREDIVWHSVSELITDVPDKEMLGLNIVEFAGDDEAL IDSQVRALCARLDGLIARQEAGVIGWQLCTELAGVERIYAMRKKAVGLLGNAKGAAKPIP FAEDTCVPPEHLADYIAEFRALLDSHGLSYGMFGHVDAGVLHVRPALDMCDPQQEVLMKR ISDDVVALTAKYGGLLWGEHGKGFRAEYSPAFFGEELYRELRKVKSVFDPQNRLNPGKIC PPEDVDAPMMKVDAVKRGTYDRQIPLAVRQEWRGAMECNGNGLCFNFDAKSPMCPSMKIS LNRIHSPKGRATLVREWLRLLADRGIDPIQLEKELPEKRASLRTLIARTRNSWHARKGEY DFSHEVKEAMSGCLACKACSTQCPIKIDVPEFRSRFLQLYHTRYLRPLRDHMVATVESYA PLMARAPKTFNFFIDQPLVRNLAKKHIGMVDLPLLSAPSLQRQMVGHRSANMTLEQLELL GPEQKARTVLVVQDPFTSYYDAQVVADFIRLVEKLGLQPVLLPFSPNGKAQHIKGFLNRF AKTAKKTSEFLNRVAKLNIPMVGVEPALVLCYRDEYKLALGEQRGDFHVLLVNEWLSTVV ASQQPVAVAGEPWYFFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHE VKNHQNSLGIYELSWRQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPLQALLEIIG >gi|283548478|gb|GG730299.1| GENE 1335 1436445 - 1437545 1309 366 aa, chain + ## HITS:1 COG:STM1364 KEGG:ns NR:ns ## COG: STM1364 COG0628 # Protein_GI_number: 16764714 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 1 363 1 363 372 538 89.0 1e-153 MVNFRQPRDIAQVLLTVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPILLRLQKILW GRRSLAVLVMTLLLVLLFIIPIALLVNSIVDGSGPLIHAVTAGDMTLPDLAWLNNIPLVG AKMYGAWHSLLDMGGSAIMAKVRPYIGATTTWFVGQAAHIGRFMMHCGLMLLFSALLYWR GEQVALGIRHFACRLASKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAVTGVPY ATLLAVLMILSCLVQLGPLPVLVPAIIWLYWTGDSTWGTVLLVWSGVVGTLDNVIRPMLI RMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSWRLFSAWVNEAPAPGSDPDELLA EIESNK >gi|283548478|gb|GG730299.1| GENE 1336 1437996 - 1438352 234 118 aa, chain + ## HITS:1 COG:no KEGG:SeAg_B1810 NR:ns ## KEGG: SeAg_B1810 # Name: not_defined # Def: putative cytoplasmic protein # Organism: S.enterica_Agona # Pathway: not_defined # 1 118 2 119 119 164 66.0 1e-39 MNALELQAIRHIFAMTVEESAMYISRDNNVAAWQQWENGEREIPQVIVHICAEMKARRKA RINAIIDKINNRIGNNTMRFFPDLNSFQTVYHHNDFLDWKIYQSAAVELYAHDLERLC >gi|283548478|gb|GG730299.1| GENE 1337 1438401 - 1439621 1259 406 aa, chain + ## HITS:1 COG:ydiM KEGG:ns NR:ns ## COG: ydiM COG0477 # Protein_GI_number: 16129646 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 405 1 401 404 575 79.0 1e-164 MKNTYFSTAIGLYLNYLVHGMGVILMSLNMSSLEHQWQTNAAGVSIVISSLGIGRLSVLL MAGMLSDRYGRRPFIIFGMVCYLIFFVGIINTHSIFIAYAFGFLAGMANSFLDAGTYPSL MEAFPRSPGTANILIKAFVSSGQFLLPMIISLLVWAELWFGWSFLLAAAIMVLNGAFLFR CRFPPHPGHQTAVKALPAKRETRQPEHRCSILDLASYTLYGYIAMATFYLVSQWLAQYGQ FVAGMPYTLSIKLLSIYTCGSLLCVLITAPLARKAGRATSLLMLYTFVSFIALLTVCLHP TPYVVIAFAFVIGFSSAGGVVQIGLTLMAARFPYAKGKATGIYYSAGSIATFTIPLITAR ISETSIAHIMWFDTGIAAVGFLLALFIGYRSRIALKHQLKMATVAE >gi|283548478|gb|GG730299.1| GENE 1338 1439860 - 1441095 1051 411 aa, chain + ## HITS:1 COG:STM1360 KEGG:ns NR:ns ## COG: STM1360 COG0477 # Protein_GI_number: 16764711 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 411 1 411 411 646 90.0 0 MSQNKTFNTPFLLAITCIYLSYFLHGISVITLAQNMTSLAEKFSTDNAGIAYLISGIGLG RLVSILFFGVLSDKFGRKAIILLGAILYMLFFFGIPASPNLMIAFILAVCVGVANSALDT GGYPALMECFPKASGSAVILVKAMVSFGQMIYPIVVSTMLLNHIWYGYAVVIPGVLFVVI TLMLLKSRFPSQMVDAGIAKELPQMNSKPLVWLEGVASVMFGVAAFSTFYVIVVWMPKYA MAFAGMAEADALKTISYYSMGSLVCVFIFAALLKKMVRPIWANVFNAGLATITAAVIYLY PSPLVCNAGSFLIGFSAAGGILQLGVSVMSEFFPRSKAKVTSVYMMMGGVANFIIPLITG YLSNIGLQYIIVLDFAFALLAFITAIIVFIRYYRVFDIPKNDVRLGERYFQ >gi|283548478|gb|GG730299.1| GENE 1339 1441117 - 1441983 1095 288 aa, chain + ## HITS:1 COG:ydiB KEGG:ns NR:ns ## COG: ydiB COG0169 # Protein_GI_number: 16129648 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli K12 # 1 288 1 288 288 536 92.0 1e-152 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNSTFANAIAGLKALK MRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGF DIKGKTMVLLGAGGASTAIGAQAAIEGIKEIKLFNRKDEFFEKAQAFAKRVNENTDCVVT VIDLADRQAFADALATADILTNGTKVGMKPLDNESLVTDVSLLRPELLVTECVYNPHMTK LLQQAQLAGCKTIDGYGMLLWQGAEQFKLWTGKDFPLEYVKQVMGFAA >gi|283548478|gb|GG730299.1| GENE 1340 1442020 - 1442778 828 252 aa, chain + ## HITS:1 COG:STM1358 KEGG:ns NR:ns ## COG: STM1358 COG0710 # Protein_GI_number: 16764709 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Salmonella typhimurium LT2 # 1 252 1 252 252 397 84.0 1e-110 MKTVTVRNLVIGEGAPKIIVSLMGKDIATVKSEALAYREADFDILEWRVDHFSDVASTDA VLEAARAIRDVMADKPLLFTFRSAKEGGEQALSVENYIALNRAAVDSGLVDMIDLELFTG DELVKATVEYAHAKNIIVIMSNHDFHKTPAAEEIIQRLRKMQELGADIPKIALMPQNKTD VLTLLGATLEMQERYADRPIITMSMAKTGVISRLAGEVFGSAATFGAVKKASAPGQISVT DLRSVLTILHQA >gi|283548478|gb|GG730299.1| GENE 1341 1442933 - 1444528 1459 531 aa, chain + ## HITS:1 COG:ECs2401 KEGG:ns NR:ns ## COG: ECs2401 COG4670 # Protein_GI_number: 15831655 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase # Organism: Escherichia coli O157:H7 # 1 531 1 531 531 1010 93.0 0 MKLSRPERINGRVPVLSAADAVNYIPDEATLCVLGAGGGILEATTLITALADKYKNSQSP RNLSLISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIAAYNYPQGV LTQTLRASAAHQPGILSDIGIGTFVDPRQQGGKLNEVTTEDLIKLVEIDNKEYLYYKAIA PNIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKAV RIPGYLVDIVVIDPDQTQLYGGAPVNRFISGDFVLDDSLQTALPLNQRKLVARRALFEMR KGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMT SQFDFYHGGGLDVCYLSFAEVDRHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTA GSLKTEVADGKLTIVQEGRVKKFVNELPEVTFSGKIALERGLDVRYITERAVFTLKEDGL HLVEIAPGVSLQEDILDKMDFTPIISPELKLMDERLFIDASMGFVLPDAAN >gi|283548478|gb|GG730299.1| GENE 1342 1444542 - 1445693 1381 383 aa, chain + ## HITS:1 COG:ECs2402 KEGG:ns NR:ns ## COG: ECs2402 COG1960 # Protein_GI_number: 15831656 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1 383 19 401 401 780 96.0 0 MDFSLTEEQELLLASIRELITSNFPEEYFRTCDQTATYPKEFMRALADNGISMLGVPEEF GGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTMETGDPAY ALALTEPGAGSDNNSATTSYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPEPKDPKKA FTLWWVDSKKPGIKVNPLHKIGWHMLSTCEVYLDDVEVEESDMVGEEGMGFLNVMYNFEM ERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIENMRNMVLK VAWQADQEQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERI GGGTDEIMIYVAGRQILKDYQNK >gi|283548478|gb|GG730299.1| GENE 1343 1445747 - 1446637 582 296 aa, chain - ## HITS:1 COG:STM1355 KEGG:ns NR:ns ## COG: STM1355 COG2207 # Protein_GI_number: 16764706 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 294 1 294 296 517 83.0 1e-146 MYQRCFDNAMETLFEQGKTPKFSRFVISDDPNWESGHHVHDNETELIYVKKGVARLIIDS SLYVAHAGDIVVIEQGRLHAVASDSSAPATTYTCALYGFRFNGWQDNQLLQTHSCPVISV SQGKEVIKSIFNELGIMVPQCKTNLTSSAFDAFAYALTVLYYENFKNAYRSEQGYIKKDV LIKDVLVYLNNNFREKITLEQLSKKFRASVSYICHEFTREYRISPINYVIQRRMTEAKFS LTNTEASLAEISWRVGYENVDHFAKLFQRHVGCTPSDYRKQFKNNLAEQECLMPEL >gi|283548478|gb|GG730299.1| GENE 1344 1447172 - 1447909 708 245 aa, chain + ## HITS:1 COG:STM1354 KEGG:ns NR:ns ## COG: STM1354 COG2086 # Protein_GI_number: 16764705 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Salmonella typhimurium LT2 # 1 245 10 254 254 378 80.0 1e-105 MPEEQDIVVTPQRSLNFDRADAKISQFDLNAIEAAAQLSAEGDEIVALTVGGSLLQNSKV RKDVLSRGPDSLFMVQDPQLEHALPRDTAQALACAAKSMDFDLLLFGEGSGDIYAQQVGL LVGELLQLPVINAVSNIQRNGDRLVVERTLEDEVEVIDLPLPAVLCVTSDINTPRIPSMK AILGAGKKPVTPWQASDIGWTPASPLAELVSLTVPPQTERKHIILENDSAEAIAELADHL KKALN >gi|283548478|gb|GG730299.1| GENE 1345 1447931 - 1448866 867 311 aa, chain + ## HITS:1 COG:STM1353 KEGG:ns NR:ns ## COG: STM1353 COG2025 # Protein_GI_number: 16764704 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 311 1 311 311 475 77.0 1e-134 MSKLANVWVFSDNVERYAELMAGARQWGEQVHLIVQGNEQAGQVKPLGADKIVVLEAASG LQRVENYAKTIAALMQEHAGLLLMPATKRAKSLGARLSIQLNAAMVNDAVAVALEDGNLF AEHRMYGGLAFGKEKIKSALAIITLAPGVLEAVEANASHVCPVVCATYIAPRHEIVCQER RAKSVSSVDLSKAKRVVGVGRGLVAQNDLEMVRQLASVLDAEVGCSRPIAEGENWMERER YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKKAPIFNYADYGLVGDIYK VVPALIEHLSR >gi|283548478|gb|GG730299.1| GENE 1346 1448922 - 1450211 1327 429 aa, chain + ## HITS:1 COG:ydiS KEGG:ns NR:ns ## COG: ydiS COG0644 # Protein_GI_number: 16129655 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 429 1 429 429 716 84.0 0 MSDEKFDAIVVGAGVAGAVAGYVMAKAGLDVLVIERGNSAGSKNMTGGRLYAHSLERIMP GFAQEAPLERKVTREKISFLTDESAVTLDYHREKDNAPAQDSYTVLRNRLDPWLMDKAEQ AGAQFIPGVRVDALIREGNKVTGVQAGDDILEANIVILADGVNSMQGRSLGMVPPSSAHH YAVGVKELIGLPQAVIADRFNLSGDEGAAWLFAGSPSDGLMGGGFLYTNRDSVSLGLVCG LGDIAHATKSIPQMLEDFKQHPTIRPLIAGGELLEYSAHMVPEGGLAMVPKLVDDGVMIV GDAAGFCLNLGYTVRGMDLAIASAEAAAQTAIAAKERQDFSASSLMDYKRALEQGCVMRD LQHFRKIPALMENPRLFTQYPRMVADIMNDMFTVDGRPNQPVRKMMMSHAKQIGLMNILK DGIKGATAL >gi|283548478|gb|GG730299.1| GENE 1347 1450208 - 1450501 323 97 aa, chain + ## HITS:1 COG:ECs2407 KEGG:ns NR:ns ## COG: ECs2407 COG2440 # Protein_GI_number: 15831661 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli O157:H7 # 1 97 1 97 97 188 86.0 2e-48 MSQDNTVNVDVKLGVNKFNVDEGHPHIILAEHPDMNEFRKLLKACPAGLYKQDESGNIHF DSAGCLECGTCRVLCGDTILEQWEYPVGTFGIDFRYG >gi|283548478|gb|GG730299.1| GENE 1348 1450584 - 1452221 990 545 aa, chain + ## HITS:1 COG:STM1350 KEGG:ns NR:ns ## COG: STM1350 COG0318 # Protein_GI_number: 16764701 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 1 544 1 545 546 988 85.0 0 MSITLTFNAERRDAWRQQGLWGDASLGDYWRQTARAMPDKIAVVDNHGASYTYAALDSAA SSLATWFLTCGIQPGDRVAFQLPGWCEFTIIYLACLKTGAVSVPLLPAWREAELVWVLNK CKAKIFFAPTLFKQTRPVDLILPLQNQLPHLQQIVAVDKLAPATTSLALSQLLLAPPLSQ TINVHADELAAVLFTSGTEGMPKGVMLTHNNILASERAYCARLNLTWQDAFLMPAPLGHA TGFLHGVTAPFLIGARSVLLDIFTPDACLDLLEQQRCTCVLGATPFVYDMLCSMEKRPTD LSSLRFFLCGGTTIPQKIARDCQRLGIKLLSIYGSTESSPHALVNLDDSLSRMMTTDGYA AAGVEIKVVDEARNTLPAGVEGEEASRGPNVFMGYLDEPELTARALDKEGWYYSGDLCRM DEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPRIHDACVVAMPDERLGERSCAYVV LKPPHHSLSLESVVAFFSRKRVAKYKYPEHIVVVDKLPRTASGKIQKYQLRQDIIKRLSM ESVAG >gi|283548478|gb|GG730299.1| GENE 1349 1452317 - 1454695 2545 792 aa, chain - ## HITS:1 COG:ppsA KEGG:ns NR:ns ## COG: ppsA COG0574 # Protein_GI_number: 16129658 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Escherichia coli K12 # 1 792 1 792 792 1573 96.0 0 MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVSVPNGFATTADAFNQFL DQSGVNQRIYELLDKTDIDDVTALAKAGAQIRQWIIDTPFQPELENAVRDAYAQLSADDA HASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAIKHVFASLFNDRAISYRVHQG YDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQVVFITSAWGLGEMVVQGAVNPDE FYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHGKQVTIEDVPQEQRDIFSLTNAEVQ ELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQARPETVRSRGQVMERYTLHAQGKIIA EGRAIGHRIGAGPVKVIHDISEMNRIEPGDVLVTDMTDPDWEPIMKKAAAIVTNRGGRTC HAAIIARELGIPAVVGCGDATERMKDGEKVTVSCAEGDTGYVYAEMLDFSVKSSSVETMP DLPLKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMIGVHPRALLEFDDQTPELQNE IRGMMKGFDSPREFYVGRLTEGIATLGAAFYPKRVIVRMSDFKSNEYANLVGGERYEPHE ENPMLGFRGAGRYVADSFRDCFALECDAVKRVRNDMGLTNVEVMVPFVRTVAQAKAVVEE LARQGLKRGENGLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVS ELFDERNDAVKALLSMAIRAAKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTV VQTWLSLAELNK >gi|283548478|gb|GG730299.1| GENE 1350 1455024 - 1455857 740 277 aa, chain + ## HITS:1 COG:STM1348 KEGG:ns NR:ns ## COG: STM1348 COG1806 # Protein_GI_number: 16764699 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 277 1 277 277 541 97.0 1e-154 MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTINSITLPFVENESRARAVKDQIDAIY QQTGVRPLVFYSIVLPEIRSIILQSEGFCQDIVQALVAPLQREMKLDPTPIAHRTHGLNP GNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMQFGIRAAN YPFIADDMDNLVLPTSLKPLQHKLFGLTIDPERLAAIREERRENSRYASLRQCRMEVAEV EALYRKNQIPWLNSTNYSVEEIATKILDIMGLNRRMY >gi|283548478|gb|GG730299.1| GENE 1351 1455983 - 1457029 900 348 aa, chain + ## HITS:1 COG:STM1347 KEGG:ns NR:ns ## COG: STM1347 COG0722 # Protein_GI_number: 16764698 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Salmonella typhimurium LT2 # 1 348 1 348 348 676 91.0 0 MNRTDELRTARIDNLVTPAELAQRHPVSSAVARHVTDSRRRIEKILNGEDPRLLVIVGPC SIHDLDAAVEYATRLQTLREKYQTRLEIVMRTYFEKPRTVVGWKGLISDPDLNGSYRVNH GIELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSC PVGFKNGTDGNTRIAVDAIRASRASHMFLSPDKTGQMTIYQTSGNPYGHIIMRGGKKPNY YAEDIAAACDTLHEFSLPEHLVVDFSHGNCQKQHRRQLDVCDDVCQQIRNGSTAIAGIMA ESFLREGTQKIVSGQPLVYGQSITDPCLNWEDTERLVEKLASAVDSRF >gi|283548478|gb|GG730299.1| GENE 1352 1457199 - 1457387 210 62 aa, chain + ## HITS:1 COG:STM1346 KEGG:ns NR:ns ## COG: STM1346 COG4256 # Protein_GI_number: 16764697 # Func_class: P Inorganic ion transport and metabolism # Function: Hemin uptake protein # Organism: Salmonella typhimurium LT2 # 1 62 1 63 63 65 57.0 3e-11 MSRMDNTTATPAKEKTPPVVAATERRIDSKSLLGKEGRVIIEHDGQHYLLRQTHAGKLIL TK >gi|283548478|gb|GG730299.1| GENE 1353 1457462 - 1459447 2243 661 aa, chain + ## HITS:1 COG:ECs4380 KEGG:ns NR:ns ## COG: ECs4380 COG1629 # Protein_GI_number: 15833634 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 18 661 18 660 660 1094 84.0 0 MPHLHTASLRPSLLALAIVSNLPVVAYAAADDITVTATGNARSAFEAPMMVSVIDAAAPE NQTASSAADLLRTVPGLTLDGTGRTNGQDVNLRGYDRRGVLVLVDGVRQGTDTGHLNSTF LDPALIKRIEVVRGPSALLYGSGALGGVIAYDTANAKDLLEAGQNSGYRVFGTAATGDRS LGMGASAFGRTDTLDGLLAWSSRDRGNLRQSDGTTAPNDEAINNMLAKGSWKIDSAQTLA GSLRYYNNDAREPKNPQTSSADATSNPMTDRSTIQRDAQLTYSLAPADNNWLNADARIYW SEARINAQNTDNTGEFRKQTTKGGKIDNRSRLFTDSFASHLLTYGGEYYRQEQHPGGATT GFPQAKIDFSSGWLQDEITLRDLPVTLLGGTRYDAYRGSSDGYEDVDADKWSSRAGLTVA PADWLMLFGSYAQAFRAPTMGEMYNDAKHFSIGRFYTNYWVPNPNLRPETNETQEYGFGL RFDDLLMASDALEFKASYFDTKAKDYISTSVDFAAATTMSYNVPNAKIWGWDVMAKYSAD LFSLDMAYNRTRGKDTDTGEYISSINPDTVTSKLNVPIAHSGFSVGWIGTFADRSTHISS SYAKQPGYAVNDFYVSYQGQQALKGMTTTLVLGNAFDKEYWSPQGIPQDGRNGKIFVSYQ W >gi|283548478|gb|GG730299.1| GENE 1354 1459495 - 1460526 887 343 aa, chain + ## HITS:1 COG:ECs4379 KEGG:ns NR:ns ## COG: ECs4379 COG3720 # Protein_GI_number: 15833633 # Func_class: P Inorganic ion transport and metabolism # Function: Putative heme degradation protein # Organism: Escherichia coli O157:H7 # 1 342 1 341 342 560 80.0 1e-159 MNHYTRWLELKKEHPGKYARDIAGMMNISEAELTFARVGHDAWRLRGNIREILGALETVG ETKCICRNEYAVHEQVGAFTNQHLNGHAGLVLNPRALDLRLFLNQWASAFHISEITAHGE RQSIQFFDHQGDALLKVYATQNTLTEEWAALLARFIFAENPPLVLQPVNNSAPAAVTADA RTVDQEWRAMTDVHQFFGLLKRHDLTRQQAFNLVGDDLACKVANSALAQLLDAARQDGNE IMVFVGNRGCVQIFTGVIEKLVPMKGWLNIFNPAFTLHLLEESVAETWVTRKPTADGHVT SLELFAADGTQIAQLYGQRTEGEPEQRQWRAQIDALTTNGLAV >gi|283548478|gb|GG730299.1| GENE 1355 1460523 - 1461344 752 273 aa, chain + ## HITS:1 COG:YPO0281 KEGG:ns NR:ns ## COG: YPO0281 COG4558 # Protein_GI_number: 16120620 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type hemin transport system, periplasmic component # Organism: Yersinia pestis # 4 272 12 278 279 263 56.0 4e-70 MNKLLLLIALLPIAALAVPDERVVVLGGDVTEIVYALGAQSTLVARDSTSQWPEAANALA DVGYLRQLNAEGILATRPTLVLASAQAQPSLALKQLEQSNVRVVTIPASNDLNAIDEKIR VIAAATHREADGETLRTRLRQEMTALPSSELNKRVLFILNHGGMTAMAAGQQTAADAAIR AAGLRNAMQGVNRYQPLSPEGVIASQPDLVVISRDGVKAMGGETNLWALPGLAQTPAGRN KQVLQVDDMALLGFSIRTPQAILQLRAKAEQLP >gi|283548478|gb|GG730299.1| GENE 1356 1461386 - 1462336 1009 316 aa, chain + ## HITS:1 COG:YPO0280 KEGG:ns NR:ns ## COG: YPO0280 COG0609 # Protein_GI_number: 16120619 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Yersinia pestis # 9 312 25 329 334 324 66.0 1e-88 MLVVVTILATGFGALRLPVSLLWRDDDEALRQIWLTIRLPRVLLALVIGGSLALAGCVMQ GLFRNPLADPGLLGISSGAACAVALWVVLPVSLPALLMLYAPMLAAFLGALAATVVIFIL SQQRNGSLSRLLLVGIAINALCGAAVGVLSWVSNDAQLRQLSLWGMGSLGAAQWSTLLAM TSLTIPTVLIIWRLAPALNLLQLGEEEAHYLGVNVHRIQRILLLCSALLVAAAVAVSGVI GFIGLVIPHLMRMWLGADHRAVIPGSVLAGAFLLLIADTLARTSVAPAEMPVGLLTSLLG APWFLWLIFRQRGPHG >gi|283548478|gb|GG730299.1| GENE 1357 1462329 - 1463108 232 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 14 228 289 507 563 94 31 3e-17 MAEHFIAEKLHYRAAGRSVIDDVSLTLAKGELVALIGPNGAGKSTLLRLLTGFLKPVTGR CALAGKALDDWPTQTLSRHRAVMRQQTQLGFDWPVETVIAMGRAPWTQRSEPRLIAQVME ITGCSPLAGRQYAALSGGEQQRVQLARALAQLWCDGAPRGWLFLDEPTSALDLYHQQHLL RLLKKLVASGALHVCIVLHDLNLAALWADRIVLLHNGRLVSQGTPADVLQADDLKRWYGA QVHVGHHPTSASPQVFLVP >gi|283548478|gb|GG730299.1| GENE 1358 1463105 - 1464547 1362 480 aa, chain - ## HITS:1 COG:ECs2413 KEGG:ns NR:ns ## COG: ECs2413 COG0397 # Protein_GI_number: 15831667 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 480 1 478 478 818 82.0 0 MTLSFTTRWRDELPATYTALSPTPLKNAHLIWHNDALAEQLAIPAALFDISDGSGVWGGE SLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQQLADGSTLDWHLKGAGLTPYSRMG DGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVYRETVEAGAMLVRVAQSHMRF GHFEHFYYRREPEKVRQLADFAIRHYWPHWQEEADKYQLWFSDVVTRTANLIADWQAVGF AHGVMNTDNMSILGLTMDYGPYGFLDDYVPDFICNHSDHQGRYSFDNQPAAALWNLQRLA QTLSPFIPIEALNDALDRYQLALLTRYGQRMRQKLGFFSEQKNDNELLSELFSLMARERS DYTRTFRMLSLTQQHSAHSPLRDEFIDRAAFDDWFTRYRSRLQQDNVDDAVRQTQMQAAN PAMVLRNWLAQRAISQAEQGDYAELHRLHQTLRTPFVDRDDDYVSRPPDWGKRLEVSCSS >gi|283548478|gb|GG730299.1| GENE 1359 1464609 - 1465322 200 237 aa, chain - ## HITS:1 COG:STM1344 KEGG:ns NR:ns ## COG: STM1344 COG2200 # Protein_GI_number: 16764695 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Salmonella typhimurium LT2 # 1 234 1 234 237 288 64.0 6e-78 MIVSLDTLYHSELSFLPARSEKGDLKYVDIITSFASAHGDVRIPTELVLPRMSDEEQCRL FAEKLELIETCQHFFIQRKVSAWINLTPAMANILLSDAGYASQVERFSFLELTINESYPA LNNGKDNPTLAALAARFPLILKNYGAGGISTRAIFDGLFRRVVLDKNFVQQRIAHISFEP FMRAIQAQISPSCESIIISGIDTQEMLARVLPLGFSAMQGGLWPAVPPAQIISLSRI >gi|283548478|gb|GG730299.1| GENE 1360 1465642 - 1466106 273 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856514|ref|ZP_02479226.1| 50S ribosomal protein L1 [Haemophilus parasuis 29755] # 40 154 65 174 175 109 45 5e-22 MRFWLLFITALFLAGCSSHRAPAPNAHLSDSIAVIAGLNDQLQTWRGTPYRYGGMSRSGV DCSGFVLMTMRDKFDLQLPRDTRKQSKIGTEIDKDDLLPGDLVFFKTGSGESGLHVGIYD TNNQFIHASTSRGVMRSSLDNVYWRKNFWQARRI >gi|283548478|gb|GG730299.1| GENE 1361 1466184 - 1466921 494 245 aa, chain - ## HITS:1 COG:STM1342 KEGG:ns NR:ns ## COG: STM1342 COG4138 # Protein_GI_number: 16764693 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 245 5 249 249 394 82.0 1e-109 MQLQNVAESTRLGPLSGEIKAGEILHLVGPNGAGKSTLLARMAGLTTGEGGIIFGDMPLE EWPAAKLAQYRAYLAQQQNPPFAMPVWHFLTLHQPDKARTGQLQDVADALGLGDKLGRGV NQLSGGEWQRVRLAAVILQICPQANPFGQLLLLDEPMNSLDVAQQNALDRLLSQLCLQGI AIVMSSHDLNHTLRHAHKAWLLKRGKLLASGPRDAVLTPANLSQAYGVNFRRLDIEGHRM LISTT >gi|283548478|gb|GG730299.1| GENE 1362 1466933 - 1467484 531 183 aa, chain - ## HITS:1 COG:STM1341 KEGG:ns NR:ns ## COG: STM1341 COG0386 # Protein_GI_number: 16764692 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Salmonella typhimurium LT2 # 1 182 1 182 183 330 84.0 6e-91 MQNTILNTEVTTIDGEVTTLQPYSGNVLLIVNVASKCGLTPQYEQLENLQKAWHQQGFNV LGFPCNQFLGQEPGSEDEIKTYCSTTWGVTFPMFSKIEVNGEGRHPLYQKLINAAPTAVA PADSGFYERMASKGRAPLYPDDILWNFEKFLVGRDGQVLQRFSPDMTPEDPILVQSIKTA LAN >gi|283548478|gb|GG730299.1| GENE 1363 1467545 - 1468525 905 326 aa, chain - ## HITS:1 COG:STM1340 KEGG:ns NR:ns ## COG: STM1340 COG4139 # Protein_GI_number: 16764691 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type cobalamin transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 326 1 326 326 475 94.0 1e-134 MLTFALQQQRRNVRWILSLSVLMLLATILSLCAGEQWIAPGDWFSARGDLFVWQIRFPRT LAVLLVGAALALSGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPGWALGLC AIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSFDLRQLMYWMM GGFGGVDWHQAWLMVALVPVLVWICCQSQPMNMLALGETSARQLGLPLWFWRNLLVVATG WMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGAIALLFADVVARLALAS AELPIGVVTATLGAPVFIWLLLKAAR >gi|283548478|gb|GG730299.1| GENE 1364 1468805 - 1469104 318 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826992|ref|YP_001291745.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG] # 3 92 4 93 96 127 66 3e-27 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKEE >gi|283548478|gb|GG730299.1| GENE 1365 1469109 - 1471496 2867 795 aa, chain - ## HITS:1 COG:ECs2420_2 KEGG:ns NR:ns ## COG: ECs2420_2 COG0072 # Protein_GI_number: 15831674 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Escherichia coli O157:H7 # 140 795 1 656 656 1234 93.0 0 MKFSELWLREWVNPAIDSDALSNQITMAGLEVDGVEPVSGAFNGVVVGEVVECAQHPNAD KLRVTKVNVGGDRLLDIVCGAPNCRQGLKVAVATVGAVLPGDFKIKAAKLRGEPSEGMLC SFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVA VLNQAPLVEPEMAPVAATISDVLPIQVDAVEACPRYLGRVVKGINVKAPTPLWMKEKLRR CGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGSEAKLNAD TLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRY ERGVDPALQYKAMERATRLLIDICGGEAGPVIDVTNEATLPKRATITLRRSKLDRLIGHH IADEQVSDILRRLGCEVTEGQGEWKAVAPSWRFDMEIEEDLVEEVARVYGYDNIPNTPIQ AGLIMGTHREADLSLKRVKTMLNDKGYQEVITYSFVDPKIQALLHPGEESLLLPSPISVD MSAMRLSLWTGLLSTVVYNQNRQQNRVRIFETGLRFVPDTQANLGIRQDLMLAGVICGNR HDEHWNLAKETVDFYDLKGDLEAVLDLTGKLADIQFKAEANPALHPGQSAAIYLKGERIG FIGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREVSRFPANRRDIAVVVAENVPA ADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAK CVEALKERFQASLRD >gi|283548478|gb|GG730299.1| GENE 1366 1471512 - 1472495 1320 327 aa, chain - ## HITS:1 COG:ECs2421 KEGG:ns NR:ns ## COG: ECs2421 COG0016 # Protein_GI_number: 15831675 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Escherichia coli O157:H7 # 1 327 1 327 327 655 97.0 0 MSHLAELVASATAAINQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI NEAKEQVQQALNARKAELESAALNARLAEETIDISLPGRRIENGGLHPVTRTIDRIESFF GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDATRLLRTQTSGVQIRTMKE KQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNINFTNLKGTLHDFLRNFFEEDLQ VRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEIYSGFAFGMGME RLTMLRYGVTDLRSFFENDLRFLKQFK >gi|283548478|gb|GG730299.1| GENE 1367 1472906 - 1473262 578 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227332857|ref|ZP_03836513.1| hypothetical protein CIT292_02379 [Citrobacter youngae ATCC 29220] # 1 118 1 118 118 227 100 2e-57 MARVKRGVVARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQKKRQFRQL WIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA >gi|283548478|gb|GG730299.1| GENE 1368 1473313 - 1473525 358 70 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|110805473|ref|YP_688993.1| 50S ribosomal protein L35 [Shigella flexneri 5 str. 8401] # 1 70 1 70 70 142 98 7e-32 MEVIKMPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDL GLVIACLPYA >gi|283548478|gb|GG730299.1| GENE 1369 1473607 - 1474083 655 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 1 157 3 159 159 256 78 2e-66 EVRLTGLEGEALGIVSLREAIEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSK EQKKKQKVIQVKEIKFRPGTDDGDYQVKLRSLVRFLEDGDKAKITLRFRGREMAHQQIGM EVLNRVRDDLSELAVVESFPTKIEGRQMIMVLAPKKKQ >gi|283548478|gb|GG730299.1| GENE 1370 1474153 - 1476081 2080 642 aa, chain - ## HITS:1 COG:STM1333 KEGG:ns NR:ns ## COG: STM1333 COG0441 # Protein_GI_number: 16764684 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 642 1 642 642 1328 97.0 0 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKATIAGRVNGELVDASDLIEHDAKLSII TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVVDNGFYYDIDLDRTLTQEDVDAL EKRMHELAEKNYDVIKKKVSWYEARETFVKRGETYKVSILDENIAHDDKPGLYHHEEYVD MCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAA KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMD RVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGS CHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDEVNACIRMVYDMYSTFGFEKIVVKL STRPEKRIGSDEMWDRAEADLAVALEENNIPFEFQLGEGAFYGPKIEFTLYDCLDRAWQC GTVQLDFSLPSRLSASYVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPV QVVVMNITDSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKE VEAGKVAVRTRRGKDLGSLDVNEVIEKLQQEIRSRSLQQLEE >gi|283548478|gb|GG730299.1| GENE 1371 1476264 - 1476491 57 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085452|ref|ZP_06571071.1| ## NR: gi|291085452|ref|ZP_06571071.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 75 1 75 75 145 100.0 9e-34 MLRADQSSNQRALHDVNQFTGTLTPLLHWRKGISSGPKKDNADRSLCEETRKMVVILLVI YAAMLMLRWAATIWG >gi|283548478|gb|GG730299.1| GENE 1372 1476657 - 1477415 630 252 aa, chain - ## HITS:1 COG:ECs2428 KEGG:ns NR:ns ## COG: ECs2428 COG3137 # Protein_GI_number: 15831682 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative salt-induced outer membrane protein # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 429 90.0 1e-120 MKLLKTVPAAFMLTGGLLASMHAAADDSVFTVMDDPSSAKKPFEGNLNAGYLAQSGNTKS SSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAVGGRSRYNMTDYDYLFGQASW LTDRYNGYRERDVLTLGYGRQFLNGPVHSFRFEFGPGVRYDEHTDGTTETQPLGYASGAY AWQMTDNTKFTQGVSVFGADDTTLNSETALNVAINEHFGLKVAYNVTWNSEPPATAPEHT DRRTTVSLGYRM >gi|283548478|gb|GG730299.1| GENE 1373 1477703 - 1478632 901 309 aa, chain + ## HITS:1 COG:pfkB KEGG:ns NR:ns ## COG: pfkB COG1105 # Protein_GI_number: 16129677 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Escherichia coli K12 # 1 309 1 309 309 527 88.0 1e-150 MVRIYTLTLAPSLDSATITPQIYPEGKLRCTSPVFEPGGGGINVARAIAHLGGTATAIFP AGGATGEHLVALLADENVPVSTVEAKDWTRQNLHVHVESSGEQYRFVMPGAALTDDEFYQ LQDQVLEIESGALLVISGSLPPGVQLEKLTRLVTTAQKQGIRCIVDSSGEALTAALAIGN IELVKPNLKELSVLVNRELTQPDDVRKAAQEIVQTGKAHRVVVSLGPQGALGVDRDTCVQ VVPPPVKSQSTVGAGDSMVGAMTLKLAENAPFEDIVRFGVAAGSAATLNQGTRLCSLDDT QKIYSYLAQ >gi|283548478|gb|GG730299.1| GENE 1374 1478902 - 1479762 918 286 aa, chain + ## HITS:1 COG:STM1324 KEGG:ns NR:ns ## COG: STM1324 COG3001 # Protein_GI_number: 16764675 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Salmonella typhimurium LT2 # 1 286 1 286 286 550 93.0 1e-156 MWQAISRLLSEQLGEGEIELRNELPGGEIHAAWHLRYAGRDFFVKCDERELLTGFTAEAD QLELLSRSQTVSVPKVWAVGADRDYSFLVMDYLPPRPLDAHNAFILGQQLAHLHEWSDQP QFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVGHVQQRL ASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLAMLPLHTDQPPQIYDGYQ SVSPLPLDFLDRQPVYQLYTLLNRAILFGGQHLVVAQKAMERLLAV >gi|283548478|gb|GG730299.1| GENE 1375 1479817 - 1480353 472 178 aa, chain - ## HITS:1 COG:no KEGG:STM1323 NR:ns ## KEGG: STM1323 # Name: yniB # Def: regulatory protein # Organism: S.typhimurium # Pathway: not_defined # 1 178 1 178 178 306 89.0 3e-82 MTYQQAGRIAVLKRLVGWVIFIPALISTLVSVLKFMYAHSEKQEGINAVMLDFAHVMIDM MRVNTPFLNVFWYNSPTPDFQSGLNIGFWLIFILIFIGLALQDSGARMSRQARFLREGVE DQLILEQAKGSEGLSRTQIESRIVVPHHTIFLQIFPLYILPVIVIVIGYFFFSLLGFL >gi|283548478|gb|GG730299.1| GENE 1376 1480521 - 1481189 744 222 aa, chain + ## HITS:1 COG:STM1322 KEGG:ns NR:ns ## COG: STM1322 COG0637 # Protein_GI_number: 16764673 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Salmonella typhimurium LT2 # 1 222 1 222 222 379 86.0 1e-105 MSTQRQILAAIFDMDGLLVDSEPLWDRAELDVIASLGVDITRRHELPDTLGLRIDMVVDL WFAQQPWNGPTRQEVTGRIITRAIALVEETKPLLPGVREAVALCKSQGLKIGLASASPLH MLEKVLTMFDLRNSFDALASAEKLPYSKPHPQVYLDCAAQLGINPLSCVALEDSVNGMIA SKAARMRSIVVPAHENQADPRFVLADVKLPSLTELTAVHLRG >gi|283548478|gb|GG730299.1| GENE 1377 1481310 - 1482089 195 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 43 254 8 238 242 79 26 5e-13 MKIGVNMIQDAFRLVDKVAIVTGCDTGLGQGMALALAEAGCDVVGVNRKIPHETAEKINA LGRRFMAIQADLSQQDALSGIVTQTVAAFGRVDILVNNAGTIRRQDALEFSEKDWDDVMN LNLKSVFFLSQAVARQFVAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVLGITRLLAN EWAAQGINVNAIAPGYMATNNTQQLREDSERNQEIIDRIPAGRWGIPDDLKGPVVFLASS ASDYIHGYTLAVDGGWLAR >gi|283548478|gb|GG730299.1| GENE 1378 1482185 - 1482772 424 195 aa, chain + ## HITS:1 COG:ECs2434 KEGG:ns NR:ns ## COG: ECs2434 COG1988 # Protein_GI_number: 15831688 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli O157:H7 # 1 195 5 199 200 353 91.0 1e-97 MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLLPDIDHPKSLLGQRLKW ISKPIARAFGHRGFTHSLLAVFALLATFYLKVPDTWIIPADALQGMVLGYLSHILADMLT PAGVPLLWPCRWRFRLPILVPQKGNQLERFLCMALFAWAIWMPQTVQENSAVRWSSQMIN TLQMQFNRFITHQVD >gi|283548478|gb|GG730299.1| GENE 1379 1482908 - 1484299 1944 463 aa, chain + ## HITS:1 COG:STM1320 KEGG:ns NR:ns ## COG: STM1320 COG1823 # Protein_GI_number: 16764671 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Salmonella typhimurium LT2 # 1 463 1 463 463 736 97.0 0 MNFPLIANIIVFVVLLFVLAQARHKQWSLAKKVLVGLVMGVVFGLALHTIYGSDSQVLKD SVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAA LVGVLVTNLFGLTAEGLVQGGAETARLNAIETNYVGKVADLSVPQLVLSFIPKNPFADLT GANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLVAIDTLQSWVMKLVRLVMQLTPYG VLALMTKVVAGSNLQDIIKLGSFVVASYLGLGIMFVVHGILLGVNGVSPLKYFRKVWPVL TFAFTSRSSAASIPLNVEAQTRRLGVPESIASFAASFGATIGQNGCAGLYPAMLAVMVAP TVGINPLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPL IDMGRTALNVSGSMTAGTLTSQWLKQTDKTILDSDDNAELAHR >gi|283548478|gb|GG730299.1| GENE 1380 1484364 - 1484603 109 79 aa, chain - ## HITS:1 COG:no KEGG:KP1_2271 NR:ns ## KEGG: KP1_2271 # Name: cedA # Def: cell division modulator # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 77 32 108 110 140 89.0 1e-32 MKPLRQQNRPVISYVPRVEPAPPEHAVKMDAFRDVWILRGKYVAFVLMGESFQRSPAFTV PESAQRWANQIRQENELSD >gi|283548478|gb|GG730299.1| GENE 1381 1484820 - 1487078 1967 752 aa, chain + ## HITS:1 COG:ECs2438 KEGG:ns NR:ns ## COG: ECs2438 COG0753 # Protein_GI_number: 15831692 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Escherichia coli O157:H7 # 1 752 1 753 753 1344 86.0 0 MSQQDKHPLHHTAPVHNASESKPGLDSLAPADGSHRPTPEPTPPGMQPTTSGSLKAPDVR NDKLNTLERFRKGSEDFALTTNQGVRIADDQNSLRAGNRGPTLLEDFILREKITHFDHER IPERIVHARGSAAHGYFQSYVDLSATTKADFLSEENKITPVFVRFSTVQGGAGSADTVRD IRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWD YVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAQGKATFVRFHWKPLAGKAS LVWDEAQKLTGRDPDFHRRDLWEAIEAGDYPEYELGLQLIPEEDEFKFDFDLLDPTKLIP EELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGIDFTNDPLLQGRLFSYTDTQIS RLGGPNFHEIPINRPTCPYHNFQRDGMHRMDIDTNPANYEPNSINDNWPRETPPGPKRGG FESYQERIEGNKIRERSPSFGEYYAHPRLFWLSQTPIEQQHIIGGFSFELSKVTRPYIRE RVVDHLAHIDTTLAQSVASNLGFELTEEQTRISPPPDVNGLTNAPSLSLYAGSQGDIKGR VVAILLNDQVKADDLLTIMQALQAKGVHAKLLYSRMGNVVADDGSVLTIAGTFAGSPSLT VDAVIVPGGNIADIAMNGDAKYYLLEAYKHLKPIALAGDARQFKAVLDITNQREDGVVEA DGADAQFMDTLLKLMAAHRVWSRAGKIDAIPA >gi|283548478|gb|GG730299.1| GENE 1382 1487116 - 1487874 609 252 aa, chain - ## HITS:1 COG:STM1317 KEGG:ns NR:ns ## COG: STM1317 COG3394 # Protein_GI_number: 16764668 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 252 1 252 252 437 82.0 1e-122 MERLLIVNADDFGLSKGQNYGIVEACRNGVVTSTTALVNGAAIDHAVQLSRDIPALAVGM HFVLTLGRPLTPMPGLTRDGLLGKWIWQMAEEDALPLDEISQELAAQYQRFIDLFGREPT HLDSHHHVHMFPQIFPIVASFAAERGIALRIDRQAVFQASDLPETLRTSQGFSSEFYGEA ISEALFLHTLDASADRGESSLEVMCHPAFIDDAIRQSAYCYPRLTELDVLTSSSLKYAIA ERGYRLGSFLNV >gi|283548478|gb|GG730299.1| GENE 1383 1487887 - 1489242 1712 451 aa, chain - ## HITS:1 COG:STM1316 KEGG:ns NR:ns ## COG: STM1316 COG1486 # Protein_GI_number: 16764667 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases # Organism: Salmonella typhimurium LT2 # 1 451 1 451 451 881 92.0 0 MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKEKLDIIFDLCQRMID KAGVPMKLYKTLDRREALKDADFVTTQLRVGQLKAREKDERIPLSHGYLGQETNGAGGLF KGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTNFKKFIGVCNIPIGMKM FISDVLALKESDDLSIDLFGLNHMVFIKDVLVNGVSRFDELLDGVASGELKASTVKNIFD LPFSEGLIRSLKLLPCSYLLYYFKPKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNP ELNVKPKELEQRGGAYYSDAACEVINAIYNDKQTEHYVNVPHHGHVDNIPADWAVEMTCT LGRNGATPHPRITHFDEKVLGLIYTIKGFEVAASNAALSGELNDVLLALNLSPLVHSDRD AEILARELILAHEQWLPNFAGCIEKLKSEQH >gi|283548478|gb|GG730299.1| GENE 1384 1489367 - 1490206 902 279 aa, chain - ## HITS:1 COG:celD KEGG:ns NR:ns ## COG: celD COG2207 # Protein_GI_number: 16129689 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 279 2 280 280 476 89.0 1e-134 MQLQINAPEIKTVHEQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYYQEING KRVLLERGDFVFIPLGSHHQSFYDFGATRILNVGISKRFFEQHYHPLLPFCFVASQVYRA NNSFLTYIETVIASLNFRESGLDEFVEVVTFYIINRLRHHREEQVLDDIPQWLKTTVETM HDKRQFSENALENMVQLSAKSQEYLTRATQRYYSKTPMQIINEIRINFAKKQLEMTNYSV TDIAYESGYSSPSLFIKTFKKLTSFTPNSYRKKLTEFNQ >gi|283548478|gb|GG730299.1| GENE 1385 1490220 - 1490567 541 115 aa, chain - ## HITS:1 COG:STM1314 KEGG:ns NR:ns ## COG: STM1314 COG1447 # Protein_GI_number: 16764665 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 115 1 115 115 157 87.0 5e-39 MLDIENIVDTQSEAEELEEVVMGLIINSGQARSLAYGALKLAKQGDFASAKTMMEQSRLA LNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARELIAELIELHEKLK >gi|283548478|gb|GG730299.1| GENE 1386 1490621 - 1491979 1511 452 aa, chain - ## HITS:1 COG:STM1313 KEGG:ns NR:ns ## COG: STM1313 COG1455 # Protein_GI_number: 16764664 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 452 1 452 452 766 94.0 0 MSNAIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMFVLINNVFLSFGEGSF FYSMGIRLDASTIETLNSLKGIGGNVYNGTLGIMSLMAPFFIGMALAEERKVDSLAAGLL SVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVAEMFTFVVHRNWVIKLPDSVP TSVSRSFSALIPGFLILSIMGIIAWALNTWGTNFHQIIMDSISTPLASLGSVVGWAYVIF VPLLWFFGIHGSLALTALDSGIMTPWALENISIYQQFGSVDAALEAGKTFHVWAKPMLDS YIFLGGSGATLGLIIAIFLASRRPDYRQVAKLALPSGLFQINEPILFGLPIIMNPVMFIP FILVQPILAAITLAAYYSGIIPPITNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIAT LVYLPFVVVANKAQNVIDQEESEEDIANALKF >gi|283548478|gb|GG730299.1| GENE 1387 1492067 - 1492387 400 106 aa, chain - ## HITS:1 COG:ECs2444 KEGG:ns NR:ns ## COG: ECs2444 COG1440 # Protein_GI_number: 15831698 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Escherichia coli O157:H7 # 1 93 1 93 106 168 97.0 3e-42 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGPAADVVLLGPQI AYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN >gi|283548478|gb|GG730299.1| GENE 1388 1492689 - 1493027 389 112 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_1315 NR:ns ## KEGG: ECIAI39_1315 # Name: osmE # Def: DNA-binding transcriptional activator OsmE # Organism: E.coli_IAI39 # Pathway: not_defined # 1 112 1 112 112 204 97.0 6e-52 MNKNLTGILGAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK >gi|283548478|gb|GG730299.1| GENE 1389 1493236 - 1494012 747 258 aa, chain + ## HITS:1 COG:ECs2446 KEGG:ns NR:ns ## COG: ECs2446 COG0171 # Protein_GI_number: 15831700 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Escherichia coli O157:H7 # 1 249 1 249 275 461 92.0 1e-130 MTLQQEIIKALGAKPHINAEEEIRRSVDFLKSYLQTYPFLKSLVLGISGGQDSTLAGKLC QMAISELRQETGNDALQFIAVRLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQ ALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEAITGFFTKYGDGGTD INPIFRLNKRQGKQLLAALGCPEHLYKKAPTADLEDDRPSLPDEAALGVSYDNIDDYLEG KTLDAEIDKKNRRLVSED >gi|283548478|gb|GG730299.1| GENE 1390 1494194 - 1495081 475 295 aa, chain + ## HITS:1 COG:STM1309 KEGG:ns NR:ns ## COG: STM1309 COG0322 # Protein_GI_number: 16764660 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Salmonella typhimurium LT2 # 1 289 10 298 302 488 80.0 1e-138 MVRRQSAPRLTLEAAAIYEYPEHLRPFLSALPAVPGVYLFHSESDTLPLYIGKSVNIRSR VLSHLRTTDEAAMLRQSKRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQ LTEQTVQVVYSRDIDFSHAPNLFGLFANRRAALQTLQSLADEQQLCYGLLGLEPLSRGRA CFRSALKRCAGACCGKESPQAHHARLLEALERVRVICWPWNSAIALQETRAEMTQYHIIN NWLWLGAVSTLDEAATLARMPAGFDHDGYKILCRPVLSGQYKIIELNPENAPASS >gi|283548478|gb|GG730299.1| GENE 1391 1495041 - 1495667 309 208 aa, chain - ## HITS:1 COG:ydjR KEGG:ns NR:ns ## COG: ydjR COG3758 # Protein_GI_number: 16129696 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 15 208 19 212 212 333 79.0 1e-91 MAGCLRQVAALRRSGGMMEYFDIRKMPVNLWRNGAGETREICCFPPATRDFHWRASIASL AANGEFSLFPGVERVITLLEGGEVTLEEANAFTHTLKRHQPFTFAGDKVVKAKLTEGQMS MDFNIMTRRDVCQAKVRVADRTFTTFGSRGGVVFVISGAWQLGEKLLTADQGASWHDGKH TLRLLEREGKLLFSEINWMPGHSPDSVQ >gi|283548478|gb|GG730299.1| GENE 1392 1495966 - 1496451 587 161 aa, chain - ## HITS:1 COG:spy KEGG:ns NR:ns ## COG: spy COG3678 # Protein_GI_number: 16129697 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Escherichia coli K12 # 1 161 1 161 161 216 95.0 1e-56 MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHNGKFAPHHDMMFKDLNLTDA QKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDSFDKAKAEAQIAKMEEQRKANMLAHM ETQNKIYNILTPEQKKQFNANFEKRLTERPAQKGKMPEAAE >gi|283548478|gb|GG730299.1| GENE 1393 1496802 - 1497767 994 321 aa, chain - ## HITS:1 COG:STM1307 KEGG:ns NR:ns ## COG: STM1307 COG2988 # Protein_GI_number: 16764658 # Func_class: E Amino acid transport and metabolism # Function: Succinylglutamate desuccinylase # Organism: Salmonella typhimurium LT2 # 1 321 1 321 322 481 72.0 1e-135 MDNFLALTLAGTTPAKTQGATHGFGWQWFGQGILELTPAAPVEQSLVLSAGIHGNETAPV EILDSLLSRLFNGELTLAWRLLVILGNPQALAAGKRYCHSDLNRMFGGRWQLFAASEETH RAHELELCLDDFYSRAKEPARWHLDLHTAIRGSHHIRFGVLPQRNVAWDEDFLDWLGDAG LEALVFHQTPGGTFTHFSAEHFGALACTLELGKALPFGQNDLSRFAQTADALALLLQGER MPGGETSPLRYRVVSQITRRSDDFILHMDNQTLNFTPFREGTLLAQDGDERFTVTHDVEY VLFPNPNVGCGLRAGLMLEKL >gi|283548478|gb|GG730299.1| GENE 1394 1497760 - 1499103 1228 447 aa, chain - ## HITS:1 COG:astB KEGG:ns NR:ns ## COG: astB COG3724 # Protein_GI_number: 16129699 # Func_class: E Amino acid transport and metabolism # Function: Succinylarginine dihydrolase # Organism: Escherichia coli K12 # 1 442 1 442 447 749 82.0 0 MKTREINFDGLVGLTHHYAGLSFGNEASTSHRFQVSNPRLAAKQGLLKMKALADAGFLQA VIPPHERPYLPALRQLGFGGSDEQILDKVARQAPHWLSSVSSASPMWVANAATVSPSADS LDGKVHLTVANLNNKFHRSLEAPTTEALLRAIFRDENSFAIHGALPQVALFGDEGAANHN RLGGDYGDPGVQLFIYGREEGNASQPQRYPARQSREASEAVARLNLVNPHQLVFAQQNPD VIDLGVFHNDVIAVSNRQVLFCHQQAFVRQQALLEQLRRQVAGFTPLEVPAAEVSVQDAV TTYLFNSQLLSRDDGSMMLVLPQECREHAGVWRYLSRLLEDDNPIDDLRVFDLRESMSNG GGPACLRLRVVLTPQEQQALNPAVIMNDTLFNTLNNWVDRYYRDRLIAADLADPQLLREG REALDTLTQLLNLGSVYPFQQERTRHG >gi|283548478|gb|GG730299.1| GENE 1395 1499100 - 1500578 1448 492 aa, chain - ## HITS:1 COG:astD KEGG:ns NR:ns ## COG: astD COG1012 # Protein_GI_number: 16129700 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 489 1 489 492 833 84.0 0 MTLWINGDWMTGLGERRMKTNPVSGDALWQGNDADATQVAQACRAARAAFAGWAKQSFSA RQAIVEKFASLLESNKAELTQIIAQETGKPRWEAATELTAMINKIAISVQAYHARTGERH SELPDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGEAV TKLWEQAGLPPGVLNLVQGGRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKIL ALEMGGNNPLIIENPEDIDAAVHLTIQSAFVTAGQRCTCARRLLVKKGAQGDAFLARLVE VSQRLMPGSWDAEPQPFLGGLISEQAARHVSDAWQRLASLGGRTLLAPRLVKAGTSLLTP GIIELSGVANVPDEEVFGPLLGVWRYDSFDDAIRMANNTRFGLSCGLVSPDRSQFDQLLL EARAGIVNWNKPLTGAASTAPFGGVGASGNHRASAWYAADYCAWPMASLESPALTLPSAL SPGLDFSREDKL >gi|283548478|gb|GG730299.1| GENE 1396 1500575 - 1501609 1186 344 aa, chain - ## HITS:1 COG:ECs2453 KEGG:ns NR:ns ## COG: ECs2453 COG3138 # Protein_GI_number: 15831707 # Func_class: E Amino acid transport and metabolism # Function: Arginine/ornithine N-succinyltransferase beta subunit # Organism: Escherichia coli O157:H7 # 1 344 1 344 344 675 90.0 0 MMLIRPIERADITALMQLAGKTGGGLTSLPANEATLMARIERSLQTWRGELPKSEQGYVF VLEDSASGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSS ELCSLFLDPDWRKEGNGYLLSKSRFMFMAAFRDRFNEKVVAEMRGVIDEHGYSPFWESLG KRFFSMEFSRADFLCGTGQKAFIAELMPKHPIYTHFLSEEAQSVIGQVHPQTAPARAVLE KEGFRYRNYVDIFDGGPTLECDIDRVRAIRKSRLVEVVEGQPATGDYPACLVANENYQNF RVMLVRADPDIQRLVLTAAQLDALKCHAGDHVRFVRLCAEEKTA >gi|283548478|gb|GG730299.1| GENE 1397 1501606 - 1502826 1293 406 aa, chain - ## HITS:1 COG:ECs2454 KEGG:ns NR:ns ## COG: ECs2454 COG4992 # Protein_GI_number: 15831708 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli O157:H7 # 1 406 1 406 406 752 88.0 0 MSLSITRENFDEWMMPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPAL REALNDQASKFWHTGNGYTNEPVLRLAKKLIDATFAERVFFCNSGAEANEAALKLARKYA HDRFGNQKSGVVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAVYNDLDSASQLI DDTTCAVIVEPVQGEGGVVPATNAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMH YGVTPDLLTTAKALGGGFPIGALLATEDCASVMTVGTHGTTYGGNPLASAVAGKLLDIVN TPDVLNGVKQRHDWFVERINAINERFGLFSEIRGLGLLIGCVLNTDFAGKAKLISQEAAN AGVMVLIAGANVVRFAPALNVSEEEVATGLDRFALACERIKAGGSS >gi|283548478|gb|GG730299.1| GENE 1398 1503271 - 1504077 746 268 aa, chain + ## HITS:1 COG:xthA KEGG:ns NR:ns ## COG: xthA COG0708 # Protein_GI_number: 16129703 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Escherichia coli K12 # 1 267 1 267 268 513 91.0 1e-145 MKFVSFNINGLRARPHQLAAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQK GHYGVALLTKETPIAVRRGFPNDGEEAQRRIIMAEIPSPLGSITVINGYFPQGESRDHET KFPAKAAFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFL PEEREWMERLLGWGLVDTYRHAWPEKNDQFSWFDYRSKGFDDNRGLRIDLLLASNPLAER CEETGIDYEIRSMEKPSDHAPVWAKFRV >gi|283548478|gb|GG730299.1| GENE 1399 1504397 - 1504957 529 186 aa, chain + ## HITS:1 COG:ydjX KEGG:ns NR:ns ## COG: ydjX COG0398 # Protein_GI_number: 16129704 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 2 176 62 236 252 241 76.0 5e-64 MFGYTFYILLFIIAALCLIPGSILVIVGGILFGPVAGTLISLVAATLASALSFLLARWLG RDLLLKYVGHTATFQAIEKGIAHSGVDFLILTRLVPLFPYNIQNYAYGLTAIPFWSFTAI SAVTTLPGIFIYTLMSHELASGGITLAFIGKLSVAGLALFILIQAAKAWARHKHIDPASG HQCVDK >gi|283548478|gb|GG730299.1| GENE 1400 1504963 - 1505664 596 233 aa, chain + ## HITS:1 COG:ydjZ KEGG:ns NR:ns ## COG: ydjZ COG0398 # Protein_GI_number: 16129706 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 230 3 232 235 315 74.0 5e-86 MNKARLTRYYRISLLALLLLALMAWAWIPGVSDFLHRSLAAFAPLDQHALESFIRSYGPQ AAVVSFFLMILQAIVAPIPAFVITFANASLFGAFWGGVLSWSSAMAGAALCFFIARVLGR SAVEKLTGKTVLNNMDAFFERYGKHTILICRLLPFVPFDPVSYAAGLTSIRFRHFLIATG IGQLPATIVYSWAGSLLTGGAFWFVTGLFILFALSVVIAVARSLYLERQRNKT >gi|283548478|gb|GG730299.1| GENE 1401 1505696 - 1506865 1168 389 aa, chain + ## HITS:1 COG:ynjB KEGG:ns NR:ns ## COG: ynjB COG4134 # Protein_GI_number: 16129708 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Escherichia coli K12 # 16 389 18 389 389 576 82.0 1e-164 MRYCLLCLSLLLSPLATFAQDAHWQQIKNDARGQTVWFNAWGGDNAVNQYLDWVSAEMKT HYAINLKIVRLADAADAVKRIQTEAASGRTTGGSVDLLWVNGENFRTLKEAGLLQAQWAQ TLPNWRYVDTQKPVTEDFAIPTEGAESPWGGAQLTFIARRDLTAQPPQSPQALLEFAQAH PGTVTYPRPPDFTGTAFLEQLLIMLTTKPQALKIAPDTATFADVTAPLWHYLDTLHPALW RAGKDFPPTPARMDALLNGGVLRLSLTFNPAHAQQKVASGELPKTSYSFGFSQGMIGNVH FVAIPANARASAGAKVVANFLLSPEAQRRKADASVWGDPSVLDPQKLPDEQRDALLAHIP QGLPAVLPEPHAAWVNALEQEWLRRYGTH >gi|283548478|gb|GG730299.1| GENE 1402 1506838 - 1508373 1467 511 aa, chain + ## HITS:1 COG:ynjC KEGG:ns NR:ns ## COG: ynjC COG4135 # Protein_GI_number: 16129709 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Escherichia coli K12 # 16 511 1 496 496 509 69.0 1e-144 MATPLRYALILLLWGIMAAVYLPLVPATFSLAGPALSATHWLALFDDPQLPQALLATLVS VGLATLGALALALAAILFLWPGAGWARLCTRLPWLLAIPHVAFATSMLLVFAEGGILWQW LPLLNPQPDRYGIGLGITLAVKESAFLLWILSALLSEKQLSQQVIVLDSLGYSRLQCLNW LVLPSIAPALGKAMLAIVAWSLSVVDVAIILGPGNPPTLAVLSWQWLSQGDAEQQAKGAL ASLLLVLLLLLIALAGYLFWRGWRRAIPAASGIRLRFSSCAPGRALAQLLPVSGVVCALI LALVANYSSLNSEALSNSLLLGLLSTVLALLILFAWLEWGPQTGHRWVWLPIILPALPLV TGQYLLALYTGQDGLMMTIVWGHMLWVMPWMLFVLKPAWQRIDPRLILIAQTLGWARGRI FWRVKCPLLLRPALIAFAVGFSVSIAQYMPTEWLGAGRYPTLTTEAVALSSGGSTAVLAT QALWQLLLPLFVFALTAFFAAWLGRFRQGLR >gi|283548478|gb|GG730299.1| GENE 1403 1508373 - 1509005 203 210 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 192 4 199 223 82 30 6e-14 MLTVQSVSLYQGATTLLKDVNFQVNKSDIVTIMGPSGSGKSSLFSWMVGALSPQFQAVGE LWLNGSRIDLLPTAQRQIGILFQDALLFDHFSVGQNLLLALPASLQGSARRHAVENALAR ADLAGFYQRDPASLSGGQRSRVALLRALLAQPQALLLDEPFSRLDASLRDTFRQWVFTEV RKLDIPVVQVTHDAQDIPPAGRVLQMENWA >gi|283548478|gb|GG730299.1| GENE 1404 1509094 - 1510401 1459 435 aa, chain + ## HITS:1 COG:ynjE KEGG:ns NR:ns ## COG: ynjE COG2897 # Protein_GI_number: 16129711 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Escherichia coli K12 # 1 435 6 440 440 757 87.0 0 MKRVSQMTALALALGLACASSWAAETAQTLTLNQLQQKQGAAIDTRQSAFYNGWPQSLNG PSGHEPSALNLSAAWLDKMNDEQLSAWVKAHQLNTATPVALYGSNSDMQAVKSRLQKVGF SQIATLSDALADPARLQRLPHFEQLVYPQWLHDLQQGKEVTAKPSGDWKVIEAAWGAPKL YLLSHIPGAGYIDTNEVESEPLWNKVSDAQLKAMLAKHGIRHDTTVILYGRDVYAAARVA QIMLYAGVKDVRLLDGGWQTWSDSGLPVERGTPPTVKPEPDFGVAIPAQPQLMLNMEQAR GLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTM RSADDIAAMWKQWNILPQQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSNP KNPVASGERGPDASK >gi|283548478|gb|GG730299.1| GENE 1405 1510502 - 1511125 649 207 aa, chain - ## HITS:1 COG:ynjF KEGG:ns NR:ns ## COG: ynjF COG0558 # Protein_GI_number: 16129712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Escherichia coli K12 # 1 206 3 208 208 328 90.0 4e-90 MLDRHLHPRLKPLLHHCVGLLDKPAITPDGLTLVGFAIGVLALPFLALGWYPAALVVIVL NRLFDGLDGALARRRGLTDAGGFLDISLDFLFYALVPFGFILAAPQQNALAGGWLLFAFI GTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTETILLFVLGCLFPAYFAVLAWV FGALCWMTTFTRIWSGYLALKAVQRQT >gi|283548478|gb|GG730299.1| GENE 1406 1511118 - 1511687 495 189 aa, chain - ## HITS:1 COG:ECs2459 KEGG:ns NR:ns ## COG: ECs2459 COG2128 # Protein_GI_number: 15831713 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 10 180 5 175 182 214 56.0 6e-56 MNDPHSWVSPLTRIPFSLRPLVATQKKHYGDVLHPTRWWGRMPFLFWLVALFVGFLERKK ARLTPVMRALLMTRVSQVCHCAFCVDANSLRLAERCGALDKVLQVANWQASALFSAEERV ALAYADAVTATPPQVDETLKTQMKQYFTDDVITEMTALIAFQNLSARFNAALDIPSQGLC DSFKGRPHA >gi|283548478|gb|GG730299.1| GENE 1407 1511768 - 1512181 389 137 aa, chain + ## HITS:1 COG:ynjG KEGG:ns NR:ns ## COG: ynjG COG0494 # Protein_GI_number: 16129713 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli K12 # 1 135 1 135 135 204 80.0 3e-53 MKTLDVVAAIIERDGKILLAQRAPDADQPGMWEFAGGKVEPGESQPQALVRELREELGIE AAVGRYIASHQREVSGRLIHLHAWHVPSFQGELNAYEHQDIVWCLPEEALRYPLAPADIP LLDAFILLRAARPADSS >gi|283548478|gb|GG730299.1| GENE 1408 1512141 - 1512416 212 91 aa, chain - ## HITS:1 COG:no KEGG:ROD_12981 NR:ns ## KEGG: ROD_12981 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 90 1 90 91 139 75.0 3e-32 MRRLIMAGALALVSSATLANQLYRPDVQVNVPPEVFSSSGQRAQPCSQCCIYQDQNYSEG AVIKADGVLLQCQRDDKTISSNPLVWRRVKE >gi|283548478|gb|GG730299.1| GENE 1409 1512654 - 1513997 1696 447 aa, chain + ## HITS:1 COG:STM1299 KEGG:ns NR:ns ## COG: STM1299 COG0334 # Protein_GI_number: 16764650 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 447 1 447 447 875 95.0 0 MDQTCSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPRYRQMSLLERLVEPERV IQFRVVWLDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALT TLPMGGGKGGSDFDPKGKSEGEIMRFCQALMTELFRHLGPDTDVPAGDIGVGGREVGFMA GMMKKLSNNSACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGLSFEGMRVAVSGS GNVAQFAIEKAMEFGARVVTASDSSGTVVDESGFTKEKLARLCAIKDSRDGRVADYAREF GLTYLEGKQPWSVPVDIALPCATQNELDVDAARVLIANGVKAVAEGANMPTTIEATDLFL EAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACVEYGGES KQTNYVRGANIAGFVKVADAMLGQGVI >gi|283548478|gb|GG730299.1| GENE 1410 1514088 - 1516031 1828 647 aa, chain - ## HITS:1 COG:topB KEGG:ns NR:ns ## COG: topB COG0550 # Protein_GI_number: 16129717 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Escherichia coli K12 # 1 644 1 646 653 1245 93.0 0 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR WSLVDLPIVPDKWQLQPRPSVTKQLNVIKRFLHEASEVIHAGDPDREGQLLVDEVLDYLQ LAPEKRQQVQRCLINDLNPQAVERAIERLRANSEFIPLCVSALARARADWLYGINMTRAY TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPAEERFTAIW QPSEACEPYQDEEGRLLNRTLAEHVVNRINGQPAFVTSYNDKRESESAPLPFSLSALQIE AAKRFGLSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHAVMNAISVHAPDLLP QPAVNPDTRNRCWDDKKVDAHHAIIPTARSSSINLTDNESKIYNLIARQYLMQFCADAVF RKCVIELDIAKGKFVAKARFLAEAGWRTLLGNKERDEDNDGTPLPVVAKDDELLCEKGEV VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGF LVKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESILTQISEKQCRYQDFMQPLVGTLY QLIDQARSTPVRRFRGIAAPGGAGEKKKSAPRKRPAKKSPPSEEASL >gi|283548478|gb|GG730299.1| GENE 1411 1516036 - 1517079 1464 347 aa, chain - ## HITS:1 COG:STM1297 KEGG:ns NR:ns ## COG: STM1297 COG0709 # Protein_GI_number: 16764648 # Func_class: E Amino acid transport and metabolism # Function: Selenophosphate synthase # Organism: Salmonella typhimurium LT2 # 1 347 1 347 347 630 92.0 1e-180 MSEQAIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLVGNETRDDAAVYDLGNG TSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAIAILGWPLDKLAPEIARE VTEGGRFACRQAGIALAGGHSIDAPEPIFGLAVTGVVPTERVKKNSTAEAGCRLFLTKPL GIGVLTTAEKKSLLKDEHIGLATEVMCRMNIAGAAFADIDGVKAMTDVTGFGLLGHLSEM CQGAGVQAQIVYQDIPKLPGVEEYIAQGAVPGGTQRNFASYGHLMGEMPQSVRDLLCDPQ TSGGLLLAVTPEAEAEVKAAAAQFGIDLTAIGELVEARGGRAMVEIR >gi|283548478|gb|GG730299.1| GENE 1412 1517196 - 1517747 593 183 aa, chain - ## HITS:1 COG:STM1296 KEGG:ns NR:ns ## COG: STM1296 COG0778 # Protein_GI_number: 16764647 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 312 86.0 2e-85 MDALELLITRRSASRLVEPAPTGEQLQNILRAGMRAPDHKTLQPWQFFVIEGEGRERFSA VLEKGAIAAGSDEKAREKARTAPFRAPLIITVVAKCEENDKVPLWEQEMSAGCAVMAMQM AAVAQGFGGIWRSGALTESAEVREAFDCRPQDKIVGFLYLGTPQLKASTTISPADPSAFV CYF >gi|283548478|gb|GG730299.1| GENE 1413 1517923 - 1519779 2013 618 aa, chain + ## HITS:1 COG:sppA KEGG:ns NR:ns ## COG: sppA COG0616 # Protein_GI_number: 16129720 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Escherichia coli K12 # 1 618 1 618 618 1096 88.0 0 MQTLWRFIAGFFKWTWRLLNFVREFVLNLFFIFLVLVGVGIWMQVSSSNTSEHAERGALL LDISGVIVDKPSSTSRLSVIGRQLFGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDL KNFAGADQPSMQYIGKALREFRDSGKPVFAVGDNFSQGQYYLASFANKIYLSPQGSVDLH GFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYL DTVAANRQIPAQQVFPGAQAMLDGLTKVDGDTAKYALDNKLVDALASSAEVEKILTKQFG WSKADKNFRAVSYYDYTLKTPADTGESIGVIFANGAIMDGEETPGNVGGDTTAAQIREAR LDPKVKAIVLRVNSPGGSVSASEVIRAELAAAKAAGKPVVVSMGGMAASGGYWISTPASY IVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVATSPLADISITKALPPEVQQMMQLS IENGYKRFITLVADARKTTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA KLKQWHIEYYQDEPTFMDMVIDSMSGSVRAMLPEAIQAMLPPPLASAASVVKAESDKLAA FNDPQNRYAFCLTCANVR >gi|283548478|gb|GG730299.1| GENE 1414 1519776 - 1520930 539 384 aa, chain - ## HITS:1 COG:RSp0044 KEGG:ns NR:ns ## COG: RSp0044 COG4977 # Protein_GI_number: 17548265 # Func_class: K Transcription # Function: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain # Organism: Ralstonia solanacearum # 43 375 5 338 387 189 33.0 9e-48 MCFITVPGNVAPSPGFKPEPEVKKNQITLPPGGKADRDIITAIDANQTEMPVRPQLNVGI VLWPEFPLLALAGLTDALRHAADMGDDSQKIRCSWRLMSATPEQPVFSSSGMAMMPDSAF VAPEQFDYIVVIGGLLRSMAKADPAARRYLHLAHQRNIPLVGVCTGSFVLAQEGFLQGLT AAVHPWHLNDFKTQFPLLSARTGVDFHEEKGILTCPGGISTIGLATELIRRHCGPDRATK AIFQMSVPNRIDSTSVAVSRAIGFTHVSDSRLRKAVFLIEKGLVKPISTQWLAAEVNLSP RQLTRLFNAEFSQSPGEFIRSARLRYAHWLLINSGERVTEIALRLGFSDCAHFIRMFSRE FGCTPGDCRNTRINAAPSGAAFDG >gi|283548478|gb|GG730299.1| GENE 1415 1520864 - 1521799 438 311 aa, chain - ## HITS:1 COG:PA1411 KEGG:ns NR:ns ## COG: PA1411 COG0697 # Protein_GI_number: 15596608 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Pseudomonas aeruginosa # 2 293 1 292 303 208 45.0 1e-53 MIRKRIDNAAILLMVVICGVWGSQQVAIKSAAADMSPFLQVGLRSAIAALLIGLLFHRRD NIFGRLRERSIARMGTVVGLLFALEFVLVSVGITLTTASHMALYLYTAPLFSAVGLHIIL PEERLSRLQWCGLGIAFFGIAVAVMCVPHDGNTQWSLAGDLCGLFAGIAWGTSSVVIRCS RLATIPSSCTLFYQLAITGIVLLLIGLMLGETTIHMTSTLMVSLTFQTLVVAFSSYLIWF TLLRNYHVASLGTLVLMTPAMGIIAGVMFLGESLQPAFIVGALLILTGLLCVSLPSRATL RHRPGLNRSLK >gi|283548478|gb|GG730299.1| GENE 1416 1522000 - 1523016 915 338 aa, chain + ## HITS:1 COG:ECs2474 KEGG:ns NR:ns ## COG: ECs2474 COG0252 # Protein_GI_number: 15831728 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Escherichia coli O157:H7 # 1 338 1 338 338 651 94.0 0 MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYDPLMDS SDMTPEDWQHIAEDIKSHYDDYDGFVILHGTDTMAFTASALSFMLENLGKPVIVTGSQIP LAELRSDGQINLLNALYVAANYPINEVTLFFNNRLFRGNRTTKAHADGFDAFASPNLAPL LEAGIHIRRLGTPPAPHGTGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILR SYGVGNAPQNKEFLKELEDASSRGIVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADM TVEATLTKLHYLLSQGLDTQSIREAMSQNLRGELTPDE >gi|283548478|gb|GG730299.1| GENE 1417 1523030 - 1523668 814 212 aa, chain + ## HITS:1 COG:ECs2475 KEGG:ns NR:ns ## COG: ECs2475 COG1335 # Protein_GI_number: 15831729 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Escherichia coli O157:H7 # 3 211 10 218 219 365 82.0 1e-101 MARALLLVDLQNDFCAGGALAVPQGDSTIDIANRLIDWCASRGDTVVASLDWHPANHGSF ASQHQVEPYSQGQLDGLAQTFWPDHCVQNSEGAALHPLLNQRAITQTFTKGENPLVDSYS AFFDNGRRQATALNAWLLEHRVAELIIMGLATDYCVKFTVLDALDLGYTVSVITDGCRGV NIHPQDSANAFMEMAAAGATLYTLDDWLETQP >gi|283548478|gb|GG730299.1| GENE 1418 1523706 - 1525064 895 452 aa, chain - ## HITS:1 COG:ydjE KEGG:ns NR:ns ## COG: ydjE COG0477 # Protein_GI_number: 16129723 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 449 1 449 452 674 83.0 0 MEQCDPIGARLDRLPLSRFHFRIFGIISFSLLVTGFLSYSGNVVLAKLVSTGWSNNYLNA AFTSALMFGYFVGSLSGGFIGDYLGRRKAFRINLLIVGVSACAATFVPNMYWLIFFRCLM GIGMGALIMVGYASFTEFIPPTVRGKWSARLSFVGNWSPMLSAAVGVVVIACLSWRMMFL LGGATMLLAWYLSGKYFIESPRWLAGKGQRSEAEKHLVQVESQIEKEKKIILPSCHSDCL TMKSGVESGSFWLLFKGQMLRCTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVTKSIF MTAIIMIGAPVGIFIAAMVIDRFPRRLFGSFLLVIIALLGYFYSIQTEEWAILSYGLVMI FFLYMYVCFASAVYVPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAILLTRYGSTTVFI VLGVMLVLCALILLCFGIETRKVSLEEISTLA >gi|283548478|gb|GG730299.1| GENE 1419 1525205 - 1525963 561 252 aa, chain - ## HITS:1 COG:ECs2479 KEGG:ns NR:ns ## COG: ECs2479 COG1349 # Protein_GI_number: 15831733 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 418 89.0 1e-117 MAAKDRIQAIKQMVANDKKVAVSNLSTIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT TALSDNIHFYKRAKSFFEEKQIIARNALPFIKNKTTMAADSSSTAMELLKLLKERNDLTL LTNSAEAFHELAQSEINVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDMQS GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLVDFSHINYLITNKAPGAEWI AFCKQNNIQLVY >gi|283548478|gb|GG730299.1| GENE 1420 1526099 - 1527082 958 327 aa, chain - ## HITS:1 COG:ydjG KEGG:ns NR:ns ## COG: ydjG COG0667 # Protein_GI_number: 16129725 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 325 1 325 326 583 85.0 1e-166 MKMIPLGSTDITLSRMGLGTWAIGGGPAWNGDLDLQVCIDTIVEAHRCGINLIDTAPGYN FGNSEVIVGQALKKLPRSEIVVETKCGIVWERTGSLFNKVGDRQLYKNLTPESIREEVDA SLQRLGIDSIDIYMTHWQSVEPCFTPIAETVDTLNALKREGKIRSIGAANVDAGHIREYL KHGELDIIQAKYSILDRALEAELLPLCQQNGIIVQVYSPLEQGLLTGTIARDYIPGGARA NKVWFQRENMLRVIDMLEQWRPLCEKYSCTIPALALAWILKQSDLITLLSGATAPEQVRE NVEALTIALTDDDSSLMRRMAEALDIK >gi|283548478|gb|GG730299.1| GENE 1421 1527092 - 1528039 876 315 aa, chain - ## HITS:1 COG:ydjH KEGG:ns NR:ns ## COG: ydjH COG0524 # Protein_GI_number: 16129726 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli K12 # 1 315 8 322 322 551 89.0 1e-157 MDNIEVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL MSRVGDDAAGHFIVDHCRRENIDIQSLKQDADIDTSINVGLVTADGERTFVTNRNGSLWK LNINDVDFERFSQAKLLSLASIFNSPLLDGEALTAIFTQAKAQQLIICADMIKPRLNETL DDIREALGYVDYLFPNFEEAKLLTGKETLDEIADSFLNCGVKTVVIKTGKRGCFIKRTDM KMEVPAVSGITALDTIGAGDNFASGFISALLEGKPLRDCALFANATAAISVLSVGATTGV KNRKLVEQLLDEYEG >gi|283548478|gb|GG730299.1| GENE 1422 1528044 - 1528880 953 278 aa, chain - ## HITS:1 COG:ydjI KEGG:ns NR:ns ## COG: ydjI COG0191 # Protein_GI_number: 16129727 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli K12 # 1 278 1 278 278 530 94.0 1e-150 MLADIKYWENDAQNKHYAIAHFNVWNAEMLMGVIDAAEESKSPVIISFGTGFVGNTSFED FSHMMVSMAKKASVPVITHWDHGRSMEIIHNAWVHGMNSLMRDASAFDFEENIRLTKEAV DFFHPLGIPVEAELGHVGNETVYEEALAGYHYTDPSQAAEFVERTGCDSLAVAIGNQHGV YTSEPKLNFDVVKRVREAVSVPLVLHGASGISDADIKKAISLGISKINIHTELCQAAMVA VQENQNQPFLHVEREVRKAVKERALEKIKLFGSDGKAE >gi|283548478|gb|GG730299.1| GENE 1423 1528905 - 1529948 1063 347 aa, chain - ## HITS:1 COG:ydjJ KEGG:ns NR:ns ## COG: ydjJ COG1063 # Protein_GI_number: 16129728 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 346 1 346 347 670 93.0 0 MKNSKAILKTPGTMKIIAADIPVPKEHEVLIKVEYVGICGSDVHGFESGPFIPPKDPNQE IGLGHECAGTVVAVGSRVSKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPN YRGALTHYLCHPESFTYKLPDNMDTMEGALVEPAAVGMHAAMLADVKPGKKIVILGAGCI GLMTLQACKCLGATDIAVVDVLEKRLAMAAQLGATTVINGAKEDTVARCQQFSGDMGADI VFETAGSAITVKQAPYLVMRGGKIMIVGTVPGDSAINFLKINREVSIQTVFRYANRYPVT IEAISSGRFDVKSMVTHIYDYEDVQRAFDESVNNKREIIKGVIKVNH >gi|283548478|gb|GG730299.1| GENE 1424 1529966 - 1531345 1085 459 aa, chain - ## HITS:1 COG:ydjK KEGG:ns NR:ns ## COG: ydjK COG0477 # Protein_GI_number: 16129729 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 459 1 459 459 785 93.0 0 MEQIAKPHCGARLDRLPDCRWHTSMFAMVAFGLLVCWSNAVGGLILAQLKELGWTDNSTT ATFSAITTAGMFLGALGGGIIGDKTGRKNAFILYEAIHIISMVVGAFSPNMTFLIACRFV MGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLIGTEWNW RVQLLIPAVLSLIATVIAWRSFPESPRWLESRGRYQEAEQVMRAIEEGVIQQTGKPLPPV VMDDDGKQPRSVPYSALLTGVLLKRVILGSFVLIAMNVVQYTLINWLPTIFMTQGINLKD SIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLVLIAALGYIYSLQTSMLLITLIGF FLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLNGYGVTG VFVLLGAVSIIVAVAIATIGIETKGVSVESLGIDAVTSK >gi|283548478|gb|GG730299.1| GENE 1425 1531372 - 1532448 1123 358 aa, chain - ## HITS:1 COG:ECs2485 KEGG:ns NR:ns ## COG: ECs2485 COG1063 # Protein_GI_number: 15831739 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli O157:H7 # 1 358 1 358 358 715 95.0 0 MKALARFGKAFGGYKMIDVPEPVCGPDDVVIEIKAAAICGADMKHYNVDSGSDQFNSIRG HEFAGRIVQVGDKVKDWKVGQRVVSDNSGHVCGVCPACEQGDFLCCTEKVNLGLDNNTWG GGFSKYCLVPGEILKIHRHALWEIPQGVDYEEAAVLDPICNAYKSIAQQSKFLPGQDVVV FGTGPLGLFSVQMARIMGAVNIVMVGLEEDVAVRFPIAKELGATAVVNGSTEDVVARCQE ICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRVGMGFKPLDFSINDITAWNKSIIGH MAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQWRNGFDAMVDKTAIKVIMTYDFDE >gi|283548478|gb|GG730299.1| GENE 1426 1532745 - 1533998 1333 417 aa, chain + ## HITS:1 COG:BH0916_1 KEGG:ns NR:ns ## COG: BH0916_1 COG3325 # Protein_GI_number: 15613479 # Func_class: G Carbohydrate transport and metabolism # Function: Chitinase # Organism: Bacillus halodurans # 86 414 131 446 450 158 34.0 2e-38 MKLLPLLAALPLLCASVVSANSLMSVGYFNGGGDVTAGPGGDINKLDVRQITHLNYSFGL IYNNEKDETNDALKDASKLHQIWLSEKVQADLQKIPTLRKQNPNLKVLLSVGGWGARGFS GAAATKETRAVFIRSAQEIIEKYGLDGIDLDWEYPVNGAWGLVESQPADRANFTALLKEL RAALGHKKLLTIAVGANAESPKSWVDVKAIAPSLDYINLMTYDMAYGTQYFNSNLYDSTK WPTVAAADKYSADFVVNNYLAAGLKPSQMNLGIGFYGRIPKRAVEPGIDWSKPDAQKNPV TQPYFQPAQIELFKSLGVDLSKDTYVKYNDIVAKLINDPQKRFSQHWDDEAKVPWLSVQS TDGKPLFALSYENPRSVAIKADYIKSKGLGGAMFWEYGADDSNQLAKQLADSLGIKH >gi|283548478|gb|GG730299.1| GENE 1427 1534092 - 1534436 372 114 aa, chain + ## HITS:1 COG:no KEGG:ROD_12761 NR:ns ## KEGG: ROD_12761 # Name: not_defined # Def: putative endonuclease # Organism: C.rodentium # Pathway: not_defined # 1 114 1 114 114 229 97.0 3e-59 MAFIPKNYARLEVGYREKALKLFPWVCGRCSREFVYSNLRELTVHHIDHDHSNNPEDGSN WEMLCLYCHDHEHSKYTEADQYGSTVVAGEDAQKAVGEAKYNPFADLKAMMNKK >gi|283548478|gb|GG730299.1| GENE 1428 1534480 - 1534755 388 91 aa, chain - ## HITS:1 COG:ECs2486 KEGG:ns NR:ns ## COG: ECs2486 COG3139 # Protein_GI_number: 15831740 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 90 16 105 105 148 86.0 2e-36 MNLDEMINSMTPEVYQRLSTAVELGKWPDGVALTAEQKENSLQLVMLWQARNNTDAQHMT IDTNGEMVMKSKQQLKVEFGITPEPIATFKS >gi|283548478|gb|GG730299.1| GENE 1429 1534798 - 1535211 285 137 aa, chain - ## HITS:1 COG:ECs2487 KEGG:ns NR:ns ## COG: ECs2487 COG0229 # Protein_GI_number: 15831741 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 264 90.0 3e-71 MANQPSPEELKKNLTEMQFYVTQNHGTEPPFTGRLLHNKRDGIYHCLICDKPLFRSETKY DSGCGWPSFYEPVSEEAIRYIKDTSHGMQRIEIRCGNCDAHLGHVFPDGPKPTGERYCVN SASLNFTDGENGEQIKG >gi|283548478|gb|GG730299.1| GENE 1430 1535553 - 1536548 1100 331 aa, chain + ## HITS:1 COG:STM1290 KEGG:ns NR:ns ## COG: STM1290 COG0057 # Protein_GI_number: 16764641 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 331 1 331 331 625 96.0 1e-179 MTIKVGINGFGRIGRIVFRAAQERSDIEIVAINDLLDADYMAYMLKYDSTHGRFNGTVEV KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLT GPSKDNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV VDLTVRLEKAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA LNDNFVKLVSWYDNETGYSNKVLDLIAHISK >gi|283548478|gb|GG730299.1| GENE 1431 1536624 - 1537508 792 294 aa, chain + ## HITS:1 COG:STM1289 KEGG:ns NR:ns ## COG: STM1289 COG0676 # Protein_GI_number: 16764640 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzymes related to aldose 1-epimerase # Organism: Salmonella typhimurium LT2 # 1 294 1 294 294 533 89.0 1e-151 MINKIFALPVIEQLTPVLSRRQLDELEVIVVDHPQVKASFALQGAHLLSWKPNGEEEVLW LSNNTPFKTGVALRGGVPICWPWFGPAAQPGLPSHGFARNLPWTLKAHNEDDNGVVLTFE LQSCAETRQLWPHEFCLLARFKVGATCEMELEAHGEFETTSALHTYFNVGDIASVKVSGL GDRLIDKVNDAREDVLADGIQTFPDRTDRVYLNPEACSVIHDDALNRNIDVIHHHHLNVV GWNPGPALSVSMGDMPDDGYKTFVCVETAYATAPQKATAEKPSRLAQTIRVAKR >gi|283548478|gb|GG730299.1| GENE 1432 1537617 - 1538471 865 284 aa, chain - ## HITS:1 COG:STM1288 KEGG:ns NR:ns ## COG: STM1288 COG0656 # Protein_GI_number: 16764639 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 2 283 3 284 285 444 78.0 1e-125 MTAKQVMFTEQVSLPAIGQGTWYMGEDAGRRQDEVAALQAGLDLGLKLIDTAEMYADGAA EEVVGEALAGRRDSAFLVSKVYPWNAAGQKAITACEASLRRLKTDYLDLYLLHWTGDFSF ADTVNAMETLIDQGKIRRWGVSNLDYDDMQALWQVSGGQHCATNQVLYHLASRGIEYDLL PWCQQQQMPVMAYSPLAQAGRLRRDLFSNPVVNDIARTHNVSAAQILLAWVIRLPGMIAI PKAANVAHVEQNAAALEITLSADELKQLDKAYPAPKGKTALDMA >gi|283548478|gb|GG730299.1| GENE 1433 1538650 - 1539000 265 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283833454|ref|ZP_06353195.1| ## NR: gi|283833454|ref|ZP_06353195.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 116 1 116 116 204 100.0 2e-51 MKKLIIAVALMTLSAAPAYAISEAYRQQLQHEHKTQVSDANAPLRASKLTPVHVNKLGVD FKRGADGIAYINGNPAANDENNADAQSYSAGLISVIVYKNGKINAMKEGKYLGRLK >gi|283548478|gb|GG730299.1| GENE 1434 1539011 - 1539238 154 75 aa, chain - ## HITS:1 COG:no KEGG:YE1871 NR:ns ## KEGG: YE1871 # Name: not_defined # Def: putative lipoprotein # Organism: Y.enterocolitica # Pathway: not_defined # 1 55 7 61 142 67 60.0 2e-10 MIAMIGGVLTGCSTEASRMNACESKSVSRDACYIAEQNRQATINAAAEKQAMENAQSLYS SDDTHSSHHHKHDKY >gi|283548478|gb|GG730299.1| GENE 1435 1539836 - 1540582 933 248 aa, chain - ## HITS:1 COG:STM1286 KEGG:ns NR:ns ## COG: STM1286 COG3713 # Protein_GI_number: 16764637 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Salmonella typhimurium LT2 # 1 248 1 248 248 365 74.0 1e-101 MTKLKLLALGVLAATAVSTAQAESQWTVGAGVGVINSPYKQYDRDVYPVPVVTYEGDNVW FHGLGGGYYLWNDTADKLSIMAYYDPTHFKPGDSDSHALRQLDKRKSSLMAGLSYVHNTQ YGFLRTALAGDTLDNSNGFVWDLAWLYRYTNGALTLTPGIGVQYSSENYNDYYYGVSNNE SRRSGLKSYSADDGWDPYLELTASYNFLGNWNVYGTGRYVRLSDEVKDSPMVDKSWSGIF SVGVTYKF >gi|283548478|gb|GG730299.1| GENE 1436 1541016 - 1542950 2141 644 aa, chain + ## HITS:1 COG:STM1285 KEGG:ns NR:ns ## COG: STM1285 COG2766 # Protein_GI_number: 16764636 # Func_class: T Signal transduction mechanisms # Function: Putative Ser protein kinase # Organism: Salmonella typhimurium LT2 # 1 644 1 644 644 1281 98.0 0 MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPVMVDTAHEPRL SRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGGKSSLA ERLKSLMQRVPIYVLSANGERSPVNDHPLCLFNPQEDAQILEKEYGIPRRYLGTIMSPWA AKRLHDFGGDITKFRVVKVWPSILEQIAIAKTEPGDENNQDISALVGKVDIRKLEHHAQN DPDAYGYSGALCRSNQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGT LETLSRFTILSRLKEPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLS TRFAFKILSRVFNFDHAEVAANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYA EFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS >gi|283548478|gb|GG730299.1| GENE 1437 1543042 - 1544355 950 437 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739530|ref|ZP_02146940.1| 50S ribosomal protein L34 [Phaeobacter gallaeciensis BS107] # 11 437 1 442 445 370 44 1e-100 MANSWQYGGLMTWFIDRRLNGKNKSTVNRQRFLRRYKSQIKQSISEAINKRSVTDVDSGE SVSIPTDDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGE GQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGFTSNGVPANISVVRSL QNSLARRTAMTAGKRRELHALEADLETIAKSEPAQLLEEERLRKEIAELRAKIERVPFID TFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVV YIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDDVVKERYDPAQWNIYAAQASDGDNW ADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFENFAMQHIRDQDDI YPVFRELFHKQSTTSNN >gi|283548478|gb|GG730299.1| GENE 1438 1544611 - 1545999 1024 462 aa, chain + ## HITS:1 COG:STM1283_2 KEGG:ns NR:ns ## COG: STM1283_2 COG2199 # Protein_GI_number: 16764634 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Salmonella typhimurium LT2 # 297 459 1 163 167 264 80.0 3e-70 MNAYMRYINEKADSSFLYDKYTNQSIAAHLMRTFSSPKEPASVEQQKALCDAFGSVNGTH GLNLTAHNYRPLHGTLQTTSTKCNGQLEDVFLLPSFDQAVNVNRLQKDYGQGLGTLEYKF RYYVDLKNNYVYFYNLIDSRKFAIHNWTFLQKGTLGIDQNDIDGIFTGRTVISSIYEDNL TEKKVMSFLTPVYYAGKLKGVVMVDINKENLKNIFYTSDRPLVWRYLNVTLSDISSGKEI HVHQSETNLLRYVHYEKDIPGGIRVTLSLDFMYFVVSSWKIFAFYLLATILLLNMVRTHF RLYHNVTRENISDAMTGLYNRKILTPMLEQRLQQLVNTGTLVTFIAIDCDKLKVINDTLG HKEGDRIITLLAKAIQTSIRKSDYAIRLGGDEFCIILIDHPSELTHRLLERIRYNLQIIA QDISISFSVGIYNMQPNDTIDDAYKASDAQLYLNKQKKRTDV >gi|283548478|gb|GG730299.1| GENE 1439 1546044 - 1546547 553 167 aa, chain + ## HITS:1 COG:ECs2496 KEGG:ns NR:ns ## COG: ECs2496 COG2606 # Protein_GI_number: 15831750 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 165 1 165 167 286 87.0 1e-77 MTEVNKDNATHQRLISLLSEQGATYRVVSHEAVGKCEAVSEIRGTALGQGAKALVCKVKG NGVNQHVLAILSADQQADLSLLASHIGGLRASLASPAEVDELTGCVFGAIPPFSFHPNLK LVADPLLFERFTEIAFNAGMLEKSVIMDTADYLRIAQPELIPFRREQ >gi|283548478|gb|GG730299.1| GENE 1440 1546687 - 1547133 594 148 aa, chain + ## HITS:1 COG:yeaL KEGG:ns NR:ns ## COG: yeaL COG2707 # Protein_GI_number: 16129743 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 148 1 148 148 184 95.0 5e-47 MFDVTLLILLGLAALGFVSHNTTVAVSILVLIIVRVTPLNTFFPWIEKQGLTVGIIILTI GVMAPIASGTLPPSTLIHSFVNWKSLVAIAVGVVVSWLGGRGVTLMGSQPQLVAGLLVGT VLGVALFRGVPVGPLIAAGLVSLIIGKQ >gi|283548478|gb|GG730299.1| GENE 1441 1547117 - 1547908 739 263 aa, chain - ## HITS:1 COG:STM1279 KEGG:ns NR:ns ## COG: STM1279 COG2207 # Protein_GI_number: 16764630 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 257 1 257 264 401 85.0 1e-112 MLGLRLDGYEPDLHHDTAVAFCIQAHEDELFSPLHQHRKGQLILALHGAITCEVENAMWV VPPQYAVWIPGEIPHSNHVTVGAQLCFLFIEPQAVVMPERCCTLKIAPLCRELILALASK TDAQRLEPPTQRLTQVLFDELPQQPQEQLQLPVSDHPKIRRMVATMAREPAQWQTLGQWA NIFAMSERNLARLVVKETGLSFRRWRHQLQLILALQALIDGHNVQQVAHMLGYDSTTAFI TMFKKGLGQTPGRYLNGLATASQ >gi|283548478|gb|GG730299.1| GENE 1442 1548017 - 1549195 713 392 aa, chain + ## HITS:1 COG:ZyeaN KEGG:ns NR:ns ## COG: ZyeaN COG2807 # Protein_GI_number: 15802205 # Func_class: P Inorganic ion transport and metabolism # Function: Cyanate permease # Organism: Escherichia coli O157:H7 EDL933 # 3 389 6 392 393 509 81.0 1e-144 MPSSRNKSAALLIAGILMIATTLRVTFTGAAPLLDAIRADYDLSTAQTGFLTTLPLLAFA LVSPLAAAVARRWGIERSLFAAMLLICAGIAIRSLPSPGLLFSGTAIIGCGIALGNVLLP GLIKRDYAQHVAKLTGAYSLTMGAAAALGSAMVVPLALNGFGWRGALMVLMAFPLLALII WLPQCRQTANASLSNSRALHSRAIWRSSLAWQVTLFLGINSLIYYVIIGWLPAILISHGY SEAQAGSLHGLLQLATAAPGLLIPLVLNRFKDQRTIAALVSVMCAVGAAGFALMPNQALL WTMLFGFGSGATMILGLTFIGLRASSAHQAAALSGMAQSVGYLLAACGPPLMGKIHDING SWIIPLAGVALLAILMAVFGLCAGRNREIANA >gi|283548478|gb|GG730299.1| GENE 1443 1549234 - 1549941 679 235 aa, chain - ## HITS:1 COG:PA2268_1 KEGG:ns NR:ns ## COG: PA2268_1 COG0504 # Protein_GI_number: 15597464 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Pseudomonas aeruginosa # 4 234 3 234 246 211 49.0 1e-54 MDISPIKDTLRIALVGDYSPDIVAHQAIPLAIDDAAAVLELVADYDWLTTSDINSSEDLI GYDAIWVVPGSPYRHPEGALIAIRYARENSIPFLGTCGGFQHAILEYARNVLGWSDAAHA ETDTSGRMVIAPLTCSLVEKTDDIELRANTLIAKAYGRDAISEGYHCNYGVSDAFAAELE SGDLRVTGWDDAGDIRAIELVTHPFFVGTLFQHERGALAGKPVPLVQAMLRAARG >gi|283548478|gb|GG730299.1| GENE 1444 1550140 - 1550487 345 115 aa, chain + ## HITS:1 COG:ECs2501 KEGG:ns NR:ns ## COG: ECs2501 COG3189 # Protein_GI_number: 15831755 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 113 8 120 122 179 77.0 1e-45 MNIQCKRVYDPAETSDGYRVLVDRLWPRGIKKTDLACNEWNKALTPSSDLRKAFHAELID FSHFSRQYRTELAQQQQEGKRLADIARQQTLTLLYAAKNTQQNHALVLAEWLRQC >gi|283548478|gb|GG730299.1| GENE 1445 1550495 - 1550746 134 83 aa, chain - ## HITS:1 COG:yoaF KEGG:ns NR:ns ## COG: yoaF COG3042 # Protein_GI_number: 16129747 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Escherichia coli K12 # 1 83 1 84 84 118 76.0 2e-27 MKLASVVLPGMLVLAGCSTTQPEAPMPPKIGMANPASVYCEQKGGSLIAVQTPQGVRSDC KLPGGEVIDEWSLWRRDHPAAGK >gi|283548478|gb|GG730299.1| GENE 1446 1550932 - 1551957 757 341 aa, chain + ## HITS:1 COG:yeaP_1 KEGG:ns NR:ns ## COG: yeaP_1 COG2203 # Protein_GI_number: 16129748 # Func_class: T Signal transduction mechanisms # Function: FOG: GAF domain # Organism: Escherichia coli K12 # 1 167 44 210 210 251 73.0 1e-66 MSDMILARVSQSLATEQSVESLVRQLLEMLEVVTEMESTYLTKVDLDARLQHILYARNSK QMQIPEGLSVPWDETLCKRAIEDNCLYSDNVPARWPECSAARALEITTFLSTPVHLPDGT FYGTLCATSRRQQALSERGEQVLHLFAGLIAQSIQKESLVAQLREANAALIAHSYTDALT GLPNRRSIFENVETLFSLARHLRQKVVVAYIDLDDFKLINDRFGHEVGDRFLIQVGQRLL RDCSDNDILGRLGGDEFLVVSLSPEEERNQQQRLQKVKNQLQQQICGDYHLGSVHLFYPG ASLGVVEIDPRETDVNCALHMADSAMYQDKKRQGKTTFVVH >gi|283548478|gb|GG730299.1| GENE 1447 1553031 - 1553279 397 82 aa, chain - ## HITS:1 COG:YPO1181 KEGG:ns NR:ns ## COG: YPO1181 COG2261 # Protein_GI_number: 16121476 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 1 82 26 107 107 99 81.0 1e-21 MGIISWVIFGLIAGILAKWIMPGKDGGGFFMTIILGVVGAVVGGWISTFFGFGKVDGFNF GSFVVAVIGAIVVLFIYRKIKS >gi|283548478|gb|GG730299.1| GENE 1448 1553642 - 1555789 1902 715 aa, chain + ## HITS:1 COG:YPO0344 KEGG:ns NR:ns ## COG: YPO0344 COG0243 # Protein_GI_number: 16120679 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Yersinia pestis # 1 713 1 711 715 1070 70.0 0 MKKITSVCPYCGAGCKLKLVVENNKIIRAEAAEGVTNQNQLCLKGYYGWDFLNDTRLLTP RLTRPMIRYEKGGKFTPVSWDEAIRYTAKRLSEIKNTYGPRAIMTTGSSRGTGNETNYVM QKFARGVLNTNNVDCCARVCHGPSVAGLQETLGNGAMSNSISDIENSKCLLIFGYNCADS HPIVARRVIKARQNGAKIIVCDPRRIETARIADQHLQLKNGCNMALVNAFGHVLIEEQLY DHEYVQKHTEGLEPYWKIVKDYAPEAVEHLTGVPAQQVRQAMRTFAAAPSATVMWGMGVT QFGQAVDVVRGLSSLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNQFPGYQDVTDF AVREKFATAWGIDVNLMDDKVGTRITEVPHLAIEGKIKAYYIMGEDPLQTEADLGLVREG FNALDFIVVQDIFMTKTAEMADVLLPATSWGEHGGVFTCADRGFQRFEKAIEPRGDVKRD WEIISLLASEMGYPMQYQNNQQIWDEMRELCPLFYGVTYEKMGEMGHVQWPCPDLDHPGT PYLYAHSQFDTPNGKGKLFAAPWRAPAEVPDENYPLVLCTVREVGHYSCRSMTGNCAALQ ALADEPGYVQINTDDAEKLGIRHRDLVWVSSRRGKVISRADVSERINAGTVYMTYQWWIG ACNELTQDNLDPISKTPETKYCAVKIEHISDQKWAEKYAAQTYSEMKSRLCEAIA >gi|283548478|gb|GG730299.1| GENE 1449 1555841 - 1556485 582 214 aa, chain - ## HITS:1 COG:no KEGG:CKO_01822 NR:ns ## KEGG: CKO_01822 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 214 4 217 218 302 74.0 5e-81 MKLNTRLTFSAFILGLVLVAIPFTANWHLPLLNGTVVTWIENGQALWLLFGAVFTLCYIR PLSRPEGEKQFWLWAAVWWLVLLGRSTSWGRDYFPEHPKLLFRAISVVLIAMIILPVLLS KRLRQDIARRVRNEPLPLWLLAITVCAFLISDTVEHHRLLSPVFLHNASYGDLIEELYEL PFMVGLFLMNLGFMQRDKQQESVSVCFSEPHLAK >gi|283548478|gb|GG730299.1| GENE 1450 1556705 - 1556887 310 60 aa, chain - ## HITS:1 COG:no KEGG:CKO_01823 NR:ns ## KEGG: CKO_01823 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 60 1 60 60 95 95.0 5e-19 MGKATYTVTVTNNSNGVSVDYETEAPMTLLVPDVAADVIKDLVNTVRSYDTENEHEVCGW >gi|283548478|gb|GG730299.1| GENE 1451 1556891 - 1557253 300 120 aa, chain - ## HITS:1 COG:STM1271 KEGG:ns NR:ns ## COG: STM1271 COG3615 # Protein_GI_number: 16764622 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein/domain, possibly involved in tellurite resistance # Organism: Salmonella typhimurium LT2 # 1 120 1 120 120 213 85.0 9e-56 MLQIPQNHIHTRSTPFWNKETAPAGIFERHLDKGTRAGVYPRLSVMQGAVKYLGYADEHS PEPVEVMVIEAGQFGVFPPEKWHHIEVMTDDTYFNIDFFVAPEVLMESANQRKVVRTGKE >gi|283548478|gb|GG730299.1| GENE 1452 1557426 - 1558064 613 212 aa, chain - ## HITS:1 COG:yeaS KEGG:ns NR:ns ## COG: yeaS COG1280 # Protein_GI_number: 16129752 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli K12 # 1 212 1 212 212 308 88.0 7e-84 MFAEYGVLNYWTYLVGAIFIVLVPGPNTIFVLKNSVGRGVKGGYLAASGVFIGDAVLMFL AYAGVAALIKTTPVLFNIVRYLGAFYLLYLGAKILYATLKSKASDAAAEEVPFGAIFKRA LILSLTNPKAILFYVSFFVQFIDVNAPHSGLSFFILAITLEIVSFFYLSFLIFSGAFVTQ YIRTKKKLAKVGNSLIGLIFVGFAARLATLQS >gi|283548478|gb|GG730299.1| GENE 1453 1558202 - 1558756 493 184 aa, chain - ## HITS:1 COG:STM1263 KEGG:ns NR:ns ## COG: STM1263 COG3443 # Protein_GI_number: 16764614 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted protein # Organism: Salmonella typhimurium LT2 # 1 184 32 215 215 308 80.0 5e-84 MSEAEQKASEGVFNDNQVRNRALSDWDGMWQSVYPYLVSGELDPVFKKKAEKDKSKTAEQ IKDYYRKGYATNVDTIGIENGVMEFHTGNQVVSCKYDYAGYKILHYKSGKKGVRYLFECK ADNSNAPKYVQFSDHVIAPRKSSHFHIFMGNTSQAALLEEMENWPTYYPYQLKGEEVVDE MLHH >gi|283548478|gb|GG730299.1| GENE 1454 1558927 - 1559532 202 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 19 191 40 231 329 82 29 8e-14 MLCCRDLVIRQGGKVLWQNLSFSLRPGERIGICAPSGTGKTTLGRVLAGWQKPTSGDILI DGQPLPIHQYCPLQLVPQHPELTFNPRRSTGDAVRDAWRPGAEILTRLHIKPEWLTRRPG QLSGGELARIAILRALDPRTRFLIADEITAQLDPSIQRDIWALLLEECQRRPLGMLIISH QQALLDQICTRALLPGADLRV >gi|283548478|gb|GG730299.1| GENE 1455 1559516 - 1560310 538 264 aa, chain - ## HITS:1 COG:STM1258 KEGG:ns NR:ns ## COG: STM1258 COG1123 # Protein_GI_number: 16764610 # Func_class: R General function prediction only # Function: ATPase components of various ABC-type transport systems, contain duplicated ATPase # Organism: Salmonella typhimurium LT2 # 1 256 1 256 265 360 75.0 1e-99 MLSLRQVSLDVARYRWFGARKWSPLLQDISFDVAPGQMVALVGGSGEGKSLLLQCLLDLL PENLRLHGAITLDGKMLDGDDIRECRGNTFSYVPQGVQALNPLLSIEKHLRRASQLSGQA WNVGQIEQLLQRSQLETSVLDAFPRQLSGGMAKRVLACHASLSQARYILADEITAWLDAP LANQLLEQLRGLCEQGAGVLWVTHDLTLAARHADRIVALHQGSVSDNVSREQLLCGDISE HLQRQWRALPERNQLFGARDAVLS >gi|283548478|gb|GG730299.1| GENE 1456 1560304 - 1561116 671 270 aa, chain - ## HITS:1 COG:STM1257 KEGG:ns NR:ns ## COG: STM1257 COG1173 # Protein_GI_number: 16764609 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 270 1 270 270 428 86.0 1e-120 MLYNPTPTLIRLLLSFSCLVFIAVYGAATLDNPLNVNLLARHLPPDALHWFGTDNLGRDL WARCFQGALTSLQIGIGAALCSGFIALMMAAVSRIHPRLDVLMRLITDAMLSMPHLLLLI LICFTLGGGKNGVIMAVALTHWPRLALILRAEAERVAHSDYLTLTWRLGHGHFYCWRYHY LPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGDWWLVL FPGLMLFSLVMLFDQLARAVHRLWLRGDVC >gi|283548478|gb|GG730299.1| GENE 1457 1561106 - 1562080 740 324 aa, chain - ## HITS:1 COG:STM1256 KEGG:ns NR:ns ## COG: STM1256 COG0601 # Protein_GI_number: 16764608 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 324 1 324 324 520 84.0 1e-147 MKSVLGHFLRLVVLLVLVAAGTFMLLSFSPVDPIRAYIGNDLLHVPPEQYARIAARWGLD QPLWERFSHWFLRVLQGDLGYSMLFNAPVASVIKERFATSFALLGGAWLLSGILGTAMGF VAGRYLNRWPDKAICRLSYLLSSLPTFWIGMLLLALFAVRWPMFPVCCAWEPGNSSEMAT LTERLRHLVLPVCALSLLGLGQITLHTRESIASVMKSEFVRFARSQGDKGWSLLRHQVLR HAITPALCLQFASLGELLGGALLAEKVFAYPGLGQATIDAGLRGDLPLLMGIVLFSTVLV FIGNSLSTWFVHLLNRALERPDAL >gi|283548478|gb|GG730299.1| GENE 1458 1562080 - 1563666 1634 528 aa, chain - ## HITS:1 COG:STM1255 KEGG:ns NR:ns ## COG: STM1255 COG0747 # Protein_GI_number: 16764607 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 528 17 544 544 958 88.0 0 MIKGKLALLTCALTLALTSPLFAAQNAGEGQTLKLAIGPEPTEGFDPMLGWSHGSYLLLH APLLKQNADMSWGNLLTEKVVTSADGKTWTLTLKPDLKFSDGSPLTADDVVFTYNKAAKS GGKIDMGNFAHASLKDSRTVEVTLSSPQSTFVNVLGSLGIVPAKLYNEKTFAKNPIGAGP YRLVSFQPGQQLIVEANPWYAGKKNDFSKLVFVFLDEDNAYAAARSGQLGLVRIAPSMAV APQQQNLKLWVRDSVENRGIVFPMVPAGKKDANGYPIGNDITADIAIRRAINYAINRKQL ADQVMEGHAIPAYSAVQGLPWQGQSVAFKDGDSEKARTILEEAGWKVGKDGVRVKEGKEA RLTLWYASGDSTRRDLAEAVRAMLEPVGIQVSLQSGSWETVERHMHANPTLFGWGSLDPM ELFHHYSSQAAGVEYYNPGYYSNPVVEQHLKQAIDAPDWQKALPFWQQVEWDGKQGAGVQ GDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSLLNNLDEWTWTCR >gi|283548478|gb|GG730299.1| GENE 1459 1564097 - 1566184 2166 695 aa, chain + ## HITS:1 COG:ECs1360 KEGG:ns NR:ns ## COG: ECs1360 COG4771 # Protein_GI_number: 15830614 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli O157:H7 # 1 695 1 696 696 995 72.0 0 MRLKPVASVVLSCMGFTSPLVFAEDVMVVTASGYEKKITNAAASVSVISQQELQTNKYND LGEALRAVEGVDVESSTGKTGGLEISIRGMPASYTLILIDGIRQNGSSDVTPNGFSAMNT SFMPPLAAIDHIEVIRGPMSTLYGSDAIGGVVNIITKKSTDKWSTSINTGVNLQESNKWG NSTVANFWSSGPLIAGVLDMQVRGSTTQRQGSSVTSLSDTASTRVPYPTESENYNIGTRL DWKTSENNTLWLDLDSARQRYDNDDGQLGNLTGGYDKTLRYERNKVTLGHDTALTFGTWK SSLGWNETENKGRQLVSSALTPENAGRAGDARELKNTNVILDSVLLTPLGDSHLLTLGGE YWDARMKDGVVLANTGETFHQKTWAAYAEDEWHILDSLALTAGTRYEHNDVFGGHLSPRA YMVWDVSDEWTLKGGVTTGYKAPSLSQLHNGISGVTAQGTVNTVGNPDLKPEESISYETG LYYENDAGLNANVTGFYTEYKNKIVSYSIDDNTNSYTNSGKARTDGIEFASTFPLWSDVL SLSLNYTYTQSKQKDGDNKGAPLSYTPKHMANARLNWQATEEMNAWLSARYRGKAPRFTE NYANLSAVQKAVYDDKGADLKAWTVLDMGMSYKLTKDLTLNTAVNNVLDKDFSEVKLYQV GRNSTYAGDYYQTAQSTTGYVNPGRNYWVSLNYQF >gi|283548478|gb|GG730299.1| GENE 1460 1566538 - 1566816 187 92 aa, chain + ## HITS:1 COG:no KEGG:ETA_07070 NR:ns ## KEGG: ETA_07070 # Name: bor # Def: lipoprotein # Organism: E.tasmaniensis # Pathway: not_defined # 1 90 5 94 96 105 57.0 5e-22 MIAIIAATALSGCAQQTFKINNGIAEKPTQETKQTFFVNGIGQSHTIDAASVCGGADKVV RTEVQESGMDVFLRIITIGIYTPREARVYCSK >gi|283548478|gb|GG730299.1| GENE 1461 1566995 - 1567201 169 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085496|ref|ZP_06353223.2| ## NR: gi|291085496|ref|ZP_06353223.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 8 68 1 61 61 108 100.0 2e-22 MADITLTMDRDSSRAVPVVHKKKLAAHSKIKYTNRAQLAIAALLFLGGIAGVTGLALYFM VQEGVFLY >gi|283548478|gb|GG730299.1| GENE 1462 1567369 - 1568892 518 507 aa, chain - ## HITS:1 COG:ycgG_2 KEGG:ns NR:ns ## COG: ycgG_2 COG2200 # Protein_GI_number: 16129131 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli K12 # 237 507 1 271 271 452 79.0 1e-127 MRKALLPIFAAVCLLLIGVFILNMQLWYSSSREALGGARYAANNMDNILDEAFQATDTAK LITEKKCDLESQYQLGTEAALRPHLRTLIIIRQGKVWCTSLPGNRILLKQIPVIPDTNLL LTSAQNTVNEIPVLLYQTHFQTNRIIVTISGVHIRGALNVPFKGVTYSLRVGDKVLGLLM DVKAFPVGVPQSGQVNSTKYPFSIIFDQPPLFSLKRLVTNGLGILLFILLISAAVAYAID KYLNKNDTPEETLRRAIEKGEIVPFYQPIVNGRDGTLRGVEVLARWKHPRAGYISPASFI PVAEKSGLIVPLTQHLMMQVAANMNSIASKLPSGFHVGINFSASHIMSPTFEEECLRYRE SFSRNDLNLVIEVTEREPLHVDDNLVQRLNTLHENGFVIALDDFGTGYSGLSYLHDLHID YIKIDQSFVGRVNNLPDSTRILDCVLDLARKLSLSIVAEGVETKAQLDYLNKNNIVFLQG YYFYKPVTFTEFVFILLSKPKVDVFVE >gi|283548478|gb|GG730299.1| GENE 1463 1569267 - 1569806 116 179 aa, chain + ## HITS:1 COG:yodB KEGG:ns NR:ns ## COG: yodB COG3038 # Protein_GI_number: 16129920 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli K12 # 1 176 11 186 186 260 73.0 1e-69 MSRFSRLQIYLHWLTLVLIAITYAAMEFRGWFPKGSTPYLLMKETHYNAGVFVWFLMIIR LILKHKYDDPAIIPTPPEWQRISAKLMHITLYVSFLALPLLGIFTMAYGGKSWSFLGLNI PPFVHSNGEVKAVVKTIHETLANVGYFLIAAHAGAALFHHAIQKDNTLLRMMPEHKHLK >gi|283548478|gb|GG730299.1| GENE 1464 1570009 - 1570251 179 80 aa, chain + ## HITS:1 COG:no KEGG:EFER_0437 NR:ns ## KEGG: EFER_0437 # Name: not_defined # Def: virulence protein MsgA, DinI-like family # Organism: E.fergusonii # Pathway: not_defined # 1 80 1 80 80 135 88.0 5e-31 MFVELVYDKRNFDGLPGAKDIILGELRKRVHRIFPDADVRVKPMLTLPAINTDASKHEKE QISRTVQEMFEEADMWLVSE >gi|283548478|gb|GG730299.1| GENE 1465 1570404 - 1571654 1566 416 aa, chain - ## HITS:1 COG:icd KEGG:ns NR:ns ## COG: icd COG0538 # Protein_GI_number: 16129099 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Escherichia coli K12 # 1 416 1 416 416 827 97.0 0 MESKVVVPAEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPPMIKVVDAAVEKAYKGE RKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQ ELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLR EEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA FKDWGYQLAREEFGGELIDGGPWVKIKSPKSGKEIVVKDVIADAFLQQILLRPAEYDVIA CMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSA EMMLRHMGWVEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM >gi|283548478|gb|GG730299.1| GENE 1466 1571856 - 1572473 384 205 aa, chain + ## HITS:1 COG:STM1237 KEGG:ns NR:ns ## COG: STM1237 COG1187 # Protein_GI_number: 16764592 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Salmonella typhimurium LT2 # 1 205 11 215 221 348 86.0 3e-96 MQKTSFRNHRVERFSSRQLTKQRKENQPKRVVLFNKPYDVLPQFTDEAGRKTLKDFIPVP GIYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGEPTPEALEALRTGVA LNDGPTLPAGVEVVEEPAWLWPRNPPIRERKNIPTRWLKVTLYEGRNRQVRRMTAHVGYP TLRLIRYAMGNYTLDNLANGEWREL >gi|283548478|gb|GG730299.1| GENE 1467 1572517 - 1573446 710 309 aa, chain + ## HITS:1 COG:no KEGG:ESA_01756 NR:ns ## KEGG: ESA_01756 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 2 297 6 298 306 191 38.0 2e-47 MDKRIIAAIILCGVSPLSYAAQDCEAAAGIAAGAADYLYETAQVRTTSRLHFNSAPEVEC QLPAFLVNGDTVEVLREARSAQLADNAPVHTFRYVRYRDAKGMFATGWVAAEGLVPLTTP LPVNPACEKWANEKMQQREKKPPVADNHYQVTGTDRAWFYSMPTEQCRSQSVFLVPGDII SAQEQSKDDFIEAVYYTADRHIVRGWLKKSQLQALDSGDRYREDINPLSTDKATRVATLN LRHDYQCIFYESWNEKNEIAIIVREDHQTALCRGAAADPLTAPAIADISINKTTGEVSSP DVAEGFAEE >gi|283548478|gb|GG730299.1| GENE 1468 1573456 - 1573917 257 153 aa, chain + ## HITS:1 COG:STM1235 KEGG:ns NR:ns ## COG: STM1235 COG0494 # Protein_GI_number: 16764590 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Salmonella typhimurium LT2 # 1 153 1 153 153 288 86.0 3e-78 MFKPHVTVACIVHAEDKFLVVEETINGKALWNQPAGHLEADETLVQAAARELWEETGIKA QPQHFIRMHQWIAPDRTPFLRFLFSIELANMCATEPHDSDIDCCRWVSAEEIISAPNLRS PLVAESIRCYQSGQRYPLAMIGEFNWPFTEGVK >gi|283548478|gb|GG730299.1| GENE 1469 1573971 - 1575077 1252 368 aa, chain + ## HITS:1 COG:trmU KEGG:ns NR:ns ## COG: trmU COG0482 # Protein_GI_number: 16129096 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Escherichia coli K12 # 1 368 16 383 383 726 96.0 0 MSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQA VCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG ADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRK IAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGEDIGQHQGLMYHTL GQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGHEHPRLMSVGLVAQQLHWVDREPF TGTMRCTVKTRYRQTDIPCTVKALDAERIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGII EQRLPLPV >gi|283548478|gb|GG730299.1| GENE 1470 1575112 - 1575753 676 213 aa, chain + ## HITS:1 COG:STM1233 KEGG:ns NR:ns ## COG: STM1233 COG2915 # Protein_GI_number: 16764588 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in purine metabolism # Organism: Salmonella typhimurium LT2 # 1 213 3 215 215 374 95.0 1e-104 MAKNYYDITLALAGICQSARLVQELAHQGHCDADALHVSLNSIIDMNPSSTLGVFGGSEA NLRLGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSAAKGAMDTLGDRINGLQRQL DHFDLQSETLMSAMAGIYVDVISPLGPRIQVTGSPAILQSPQVQAKVRASLLAGIRAAVL WHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL >gi|283548478|gb|GG730299.1| GENE 1471 1575757 - 1577127 1653 456 aa, chain + ## HITS:1 COG:ECs1603 KEGG:ns NR:ns ## COG: ECs1603 COG0015 # Protein_GI_number: 15830857 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Escherichia coli O157:H7 # 1 456 1 456 456 917 97.0 0 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFA ADAIGFLDAIVANFNEEDAARIKTIERTTNHDVKAVEYFLKEKVADIPELHAVSEFIHFA CTSEDINNLSHALMLKTARDEVVLPYWRQLIDAVKDLSVQYRDIPLLSRTHGQPATPSTL GKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ WNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYVALNHFKQKTIAGEIGSSTMPH KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQST LKGVSKLEVNREHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMK QFIDGLALPEEEKTRLKAMTPANYIGRAITMVDELK >gi|283548478|gb|GG730299.1| GENE 1472 1577229 - 1581248 2740 1339 aa, chain - ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 7 1004 10 986 1027 591 45.0 1e-167 MKPVYTDNILLNIKSRIIIWSQILLQALFPLFTVFPVHAAPATTTKETTVAMPYSQELST LASSTASGTDGAKSAATGMATSAAASSVQQWLSQFGTARVQLNVDDNGNWDDSAVDLLAP LYDNKKAVLFTQLGLRAPDGRTTGNLGMGVRTFYLENWMFGGNVFFDDDFTGKNRRVGFG AEAWTNYLKLSANTYVGTTNWHSSRDFTDYNEKPADGYDIRAEGYLPAYPQLGAKLMYEQ YYGDKVALFDTDHLQSNPSAVTTGISYTPVPLVQLAVDYKRGQDSMDDTQFQVNFRYDFG HDWRYQVDPENVKTERSLAGSRYDLVERNNQIVLQYKKKDEQGVSNLNLQVTVDNSPSDG LTPNTAQVQATDKDGQPVRNAAISWTTTGSAKFASATSMTNDSGVATVNYTDTVAEAVNI TATSGAVTASQNSHFNEVTVSSVTLKITKDNSVADGQTANQAQATVTDINGRAIANSKVS WSVGSPAVLKNAGGTTDANGNVTADFTSTVAGAATISVTAGDKSASGEGHFTANAATAVI DTMEVTRNNSPANGTTANMVKVTAKDSSGAPMSGVNVTLGADKGTVVFGAKLSKARAAAG SAYQTDAQGSLTVGFTDTVAESVVLTATLDNGNAKTASASFVADSSTAGVGDLTTTSGAL ANGIATNQATVTVVDTNNNPLPNVEVTWSQDGSAVLGTSAKTDASGKTSITFTDKKAETV NITATINGGSSLSKPSTFVADSSTARVSDLAATSGALANGSATNQATVTVVDTNNNPLPN VEVTWSQDGSAVLGTSAKTDASGKTTVTFTDTKAETVNITATVSGGSSLTKASKFVADSG SSKVNDLTVTTGALANGIATNQATVTVVDANNNPLPDAEVTWSQDGSAVLGTSAKTDADG KATVKFTDTKAETVNVKATVASGDSLSKPSEFIADVSTAKLLSLTVTKDGSSINGTDANT AEAIVVDANNNPLAGQTVQWSSDKTTVTLTPTNGGVSDANGKATVSYTDTVSESLTLTAT INGSVLSKPSSFTDDAIIASISPTTNNVLGDGSQTNEVTVIVKNAAGQALSGKNIHWTVS TSTASLQSSATVTGGDGSSSVKLTDTEGEAVTVTATLDNGQSDGTTVTFTKVLVLSLTSA SGPGGYQNLLTVTATVQDKHNQPVSGVAVNWDTTSNDLLVTSSSGNTTNSNGQAVFQFES KVVSNFSPVASIQSGTAVVSKSTSLSYTADYSAPIIYSVTPDATSLSAAELSNGFSFVVQ PWKGMVKGQDIDCQYNYTSGRILDDVVVSDDNWGKATTLVTQAFPSTDAPTSGQRFCGYL TLSGSLGQRSAQTTVNVSR >gi|283548478|gb|GG730299.1| GENE 1473 1582447 - 1583067 646 206 aa, chain + ## HITS:1 COG:phoP KEGG:ns NR:ns ## COG: phoP COG0745 # Protein_GI_number: 16129093 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli K12 # 1 200 1 200 223 366 96.0 1e-101 MRVLVVEDNALLRHHLKVQLQDLGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGL SLIRRWRSNDVSLPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNS GLASQIISLPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP DAELRESHTIDVLMGRLRKKNPGAIS >gi|283548478|gb|GG730299.1| GENE 1474 1583119 - 1584582 1208 487 aa, chain + ## HITS:1 COG:STM1230 KEGG:ns NR:ns ## COG: STM1230 COG0642 # Protein_GI_number: 16764585 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 487 1 487 487 884 89.0 0 MNKLLRHFFPLSLRVRFLLATAGVVLVLSLAYGIVALVGYSVSFDKTTFRLLRGESNLFY TLAKWDNGKINVELPENLDMQSPTMSLIYNENGKLLWAQRNVPWLTQSIQPDWLKTNGFH EIEANVDATSTLLGADHSAQQQLKEVREDDDDAEMTHSVAVNVYPATARMPQLTIVVVDT IPIELKRSYMVWSWFVYVLVANLLLVIPLLWVAAWWSLRPIESLAREVRELEEHHREMLN PATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSMRNEKMNV SDAEPIMLEQISRISQQIGYYLHRASMRGSSALLSRELHPVAPLLDKLTSALNKVYQRKG VNINLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISAQLSEDQLHILVEDDGPG IPHSKREVVFDRGQRVDTLRPGQGVGLAVAREITEQYDGQIIAGDSLLGGARMEVIFGRQ QPGQKDE >gi|283548478|gb|GG730299.1| GENE 1475 1584674 - 1585795 1206 373 aa, chain + ## HITS:1 COG:ECs1573 KEGG:ns NR:ns ## COG: ECs1573 COG2850 # Protein_GI_number: 15830827 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 373 4 376 376 721 95.0 0 MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPLSPDELAGLAMESEVDSRLVSHQDGK WQVSHGPFESYDHLGENNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG GVGPHLDQYDVFIIQGTGRRRWRVGEKLQLKQHCPHPDLLQVDPFEAIIDEELEPGDILY IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGSTYYSDPDLPPRDHPA DVLPQEMDKLREMMLGLINQPEHFQQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQG DVLVRLGGLRVLRIGDDIYANGEKIDSPHRPALEALASHIVLTAENFEDALEDPSFLATL AALVNSGYWFFEG >gi|283548478|gb|GG730299.1| GENE 1476 1585898 - 1587124 1538 408 aa, chain - ## HITS:1 COG:ECs1572 KEGG:ns NR:ns ## COG: ECs1572 COG2195 # Protein_GI_number: 15830826 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli O157:H7 # 1 406 1 406 408 788 94.0 0 MDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLQLLKQQLEEMGLVNISLSEKGTLMA TLPANVAGNIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVL HQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLIQKEIPHGDIRVAFTPDEEVGKGAK HFDVAAFDAQWAYTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAAR IHAEVPADESPETTEGYEGFYHLASMKGTVDRADMHYIIRDFDRKQFEARKRKIMDIAKK VGKGLHPDCYIELVIEDSYYNMREKVIEHPHVLDIAQKAMRDCDIEPVLKPIRGGTDGAQ LSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAKPQ >gi|283548478|gb|GG730299.1| GENE 1477 1587393 - 1588511 1065 372 aa, chain + ## HITS:1 COG:ECs1571 KEGG:ns NR:ns ## COG: ECs1571 COG3842 # Protein_GI_number: 15830825 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 372 7 378 378 702 95.0 0 MNKQPRPLSPLVQLAGIRKSFDGKEVISSLDLTINNGEFLTLLGPSGCGKTTVLRLIAGL ETVDSGHIMLDNQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAADIPP RVTEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQM QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGKIEQDGTPREIYEEPKNLFVAG FIGEINMFNATVIERLDDQRVRANVEGRECNIYVNFAVAPGQKLHVLLRPEDLRVDEIND DNHIEGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMAINWVE SWEVVLADEEHK >gi|283548478|gb|GG730299.1| GENE 1478 1588522 - 1589352 1095 276 aa, chain + ## HITS:1 COG:STM1225 KEGG:ns NR:ns ## COG: STM1225 COG1176 # Protein_GI_number: 16764580 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Salmonella typhimurium LT2 # 1 273 10 282 287 437 95.0 1e-122 MVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLENYARLLDPLYFEVLVHSL NMALIATLACLVLGYPFAWFLVKLPEKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGY LNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGA SKLQTFTRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRD WPFGAATSITLTIVMGLMLLVYWRASRLLNKRVELE >gi|283548478|gb|GG730299.1| GENE 1479 1589349 - 1590128 878 259 aa, chain + ## HITS:1 COG:ECs1500 KEGG:ns NR:ns ## COG: ECs1500 COG1177 # Protein_GI_number: 15830754 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Escherichia coli O157:H7 # 1 258 1 258 264 409 97.0 1e-114 MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTKWYGLLVNNDSLLQAA QHSLTMAVLSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFM LIGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPL AMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLVL SLVMVIASQLIARDKTKGR >gi|283548478|gb|GG730299.1| GENE 1480 1590156 - 1591202 1609 348 aa, chain + ## HITS:1 COG:STM1222 KEGG:ns NR:ns ## COG: STM1222 COG0687 # Protein_GI_number: 16764577 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Salmonella typhimurium LT2 # 1 348 1 348 348 631 95.0 0 MKKWSRHLLAAGALALGMSAAHANDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYE SNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSTLTNFHNLDPEMLNKPFD PNNDYSIPYIWGATAIGVNSDAIDPKTVTSWADLWKPEYKGSLLLTDDAREVFQMALRKL GYSGNTTNPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAYVARQAG TPLEVVWPKEGGIFWMDSLSIPANAKNKEGALKLINFLLRPDVAKEVAETIGYPTPNLAA RKLLSPEVANDKTLYPDAETINKGEWQNDVGSASAIYEEYYQKLKAGR >gi|283548478|gb|GG730299.1| GENE 1481 1591304 - 1592125 731 273 aa, chain - ## HITS:1 COG:ycfY KEGG:ns NR:ns ## COG: ycfY COG0846 # Protein_GI_number: 16129083 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Escherichia coli K12 # 1 273 1 273 279 508 91.0 1e-144 MLSRRGHRLSRFRKNKRHLRDRLRQRIFFRDRVVPELMEKPRVLVLTGAGISAESGIRTF RAADGLWEEHRVEDVATPEGFSRNPELVQSFYNARRRQLQQPEIQPNAAHIALAKLEAEL GDRFLLVTQNIDNLHERAGSQNIIHMHGELLKVRCAQSGQILEWTGDVTREDKCHCCQFP APLRPHVVWFGEMPLGMDEIYMALAMADVFIAIGTSGHVYPAAGFVHEARLHGAHTVELN LEPSQVGSEFEEKYYGPASQVVPEFVEKLLKGL >gi|283548478|gb|GG730299.1| GENE 1482 1592141 - 1593073 987 310 aa, chain - ## HITS:1 COG:ycfX KEGG:ns NR:ns ## COG: ycfX COG1940 # Protein_GI_number: 16129082 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Escherichia coli K12 # 8 310 1 303 303 577 92.0 1e-165 MLHQGAVMYYGFDIGGTKIALGVFDNHRRLQWETRVPTPRDSYDAFLDAVCNLVTEADQR FGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSE AWDDEFTQYPLVMGLILGTGVGGGLVLNGKSITGRSYITGEFGHIRLPVDALTLMGFDFP LRRCGCGQLGCIESYLSGGGFAWLYQHYYHQPLDAREIIALWEQGDEQARAHVERYLDLL AVCLGNILTIVDPDLVVIGGGLSNFSAITTQLADRLPRHLLPVARVPRIEQARHGDAGGM RGAAFLHLTD >gi|283548478|gb|GG730299.1| GENE 1483 1593102 - 1594346 1270 414 aa, chain - ## HITS:1 COG:ECs1496 KEGG:ns NR:ns ## COG: ECs1496 COG4591 # Protein_GI_number: 15830750 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Escherichia coli O157:H7 # 1 414 1 414 414 699 91.0 0 MASPLSLLIGLRFSRGRRRGGMVSLISVISTVGIALGVAVLIVGLSAMNGFERELNNRIL AVVPHGEIEAVNQPWNNWQEALDKVQKVPGIVAAAPYINFTGLVESGANLRAVQVKGVDP KQEQRLSALPSFVQNHAWDNFKAGEQQIIIGKGIADALKVKQGDWVSIMIPNASADHKLQ QPKRVRLHVTGILQLSGQLDHSFAMIPMEDAQQYLDMGSSVSGIALKVNDVFNANKLVRD AGEVTNNYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSG DIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSLIGVVIGVIVSLQLTPIINGIEALIGHQF LSGDIYFIDFLPSELHWLDVIYVLATALVLSLLASWYPARRASNIDPARVLSGQ >gi|283548478|gb|GG730299.1| GENE 1484 1594346 - 1594663 286 105 aa, chain - ## HITS:1 COG:STM1218 KEGG:ns NR:ns ## COG: STM1218 COG1136 # Protein_GI_number: 16764573 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 105 129 233 233 186 97.0 8e-48 MLKAVGLEHRASHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFELL GELNRSQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE >gi|283548478|gb|GG730299.1| GENE 1485 1594686 - 1595048 447 120 aa, chain - ## HITS:1 COG:STM1218 KEGG:ns NR:ns ## COG: STM1218 COG1136 # Protein_GI_number: 16764573 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 118 1 118 233 236 98.0 1e-62 MNKILLQCDNLCKRYQEGTVQTDVLHDVSFCVGEGEMMAIVGSSGSGKSTLLHLLGGLDT PTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKTG >gi|283548478|gb|GG730299.1| GENE 1486 1595041 - 1596240 1308 399 aa, chain - ## HITS:1 COG:STM1217 KEGG:ns NR:ns ## COG: STM1217 COG4591 # Protein_GI_number: 16764572 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Salmonella typhimurium LT2 # 1 399 38 436 436 676 94.0 0 MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNIL GLMPQAVLSSEQGSLNPQQLPEKAVVLNGVNRVAPITTGDVVLQSARSVAVGVMLGIDPA QKDPLTPYLVNVKQTDLQPGKYNVILGEQLAGQLGVNRGDQIRVMVPSASQFTPMGRLPS QRLFTVIGTFAANSEVDGYQMLTNIQDASRLMRYPVGNITGWRLWLNEPLKVDTLSQQTL PQGTKWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAIL QTQGLTPRQIMMVFMVQGASAGIIGTLLGAGLGALLASQLNNLMPIIGVLLDGAALPVAI EPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE >gi|283548478|gb|GG730299.1| GENE 1487 1596502 - 1597566 856 354 aa, chain + ## HITS:1 COG:ycfT KEGG:ns NR:ns ## COG: ycfT COG4763 # Protein_GI_number: 16129078 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 352 1 352 357 485 76.0 1e-137 MNKKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSQTLSKCWIYLNLYLAPFRMP VFFFISGYLIRRYIDSVPWTTCVNKRIWSIAWVLVLWGVVQWLALVALNNWLAPQRDLSH AANAAYAGSITGFTHGMLTASTSLWYLYALIVYFVLCKIFNHWALPMLALFVVLSVAINF VPTPWWGMNSVMRNLPWYSLGAWFGATLMVWIKEVPLRRHTLVFMVSVVAAVVAWLANIS LLLSLLSIVLIMKLFYQFEQRFGMRASSPLSVIGANTIAIYTTHRILVELFSLTLIPRIN HAAWPAYAELALLLVYPFACLLLCTLFGLLVRKISQKTVADLLFSPPSLSTASR >gi|283548478|gb|GG730299.1| GENE 1488 1597685 - 1601131 3828 1148 aa, chain + ## HITS:1 COG:STM1216 KEGG:ns NR:ns ## COG: STM1216 COG1197 # Protein_GI_number: 16764571 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Salmonella typhimurium LT2 # 1 1148 1 1148 1148 2169 94.0 0 MPEQHRYTLPAGASDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDIETSAERFQADTL SRFENRGVDPMRPLLPPHSLWLRVDELFSELKRWPRVQLKTETLANKAANTNLGFQKLPD IAVQAQQKAPLDALRKFLEGFTGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAVD NGRYLMIGAAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDARLYVPVSSLHLISRYAGGAEENA PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKL KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIGI GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG EDQSGSMESIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDEYIPDV NTRLSFYKRIASAKGETELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKTRIDWVRQFMR QLEENAVA >gi|283548478|gb|GG730299.1| GENE 1489 1601279 - 1602244 770 321 aa, chain + ## HITS:1 COG:STM1215 KEGG:ns NR:ns ## COG: STM1215 COG1376 # Protein_GI_number: 16764570 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 321 1 321 321 540 86.0 1e-153 MLNNKRLPRWLAFFTLAATFALALPAQANTWPLPPPGSKLVGKNTVHVVEDNGGSLEAIA KKYNVGFLALLQANPGVDPYVPRPGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGT NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKANGIDLPAVVPAGP DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVKPGTKVNI INTPIKASVEPNGVRLVEVHQPLSEKINDDPQLLPIVLNASMQTFKNAAQTDAAVMEHAM EIRSGMPVDVTRHHDVAQQPM >gi|283548478|gb|GG730299.1| GENE 1490 1602331 - 1602588 347 85 aa, chain - ## HITS:1 COG:no KEGG:ECO103_1157 NR:ns ## KEGG: ECO103_1157 # Name: ycfR # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 85 1 85 85 122 91.0 4e-27 MKNVKTLFVAAVLSSLSFASFAAVEVQATPAGQQKVGTISANAGTNLGSLEDQLAQKADE MGAKSFRITSVTGPNTLHGTAVIYK >gi|283548478|gb|GG730299.1| GENE 1491 1602832 - 1603467 404 211 aa, chain + ## HITS:1 COG:STM1213 KEGG:ns NR:ns ## COG: STM1213 COG1309 # Protein_GI_number: 16764568 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 352 88.0 3e-97 MTTETTGCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEF TNKEGLFRAVLDRYIARFAAKHEAQLFCEEKSLQSALEDYFTAIATCFTSKDTPAGCFMI NTSATLAASSREIAHTVKSRHAMQEQTLTQFLRQRQQRDEIPAHCDVQKLAEYLNCILQG MSISAREGASFEKLMQIARTTLRLWPELIKA >gi|283548478|gb|GG730299.1| GENE 1492 1603716 - 1605896 2554 726 aa, chain + ## HITS:1 COG:YPO0994 KEGG:ns NR:ns ## COG: YPO0994 COG1629 # Protein_GI_number: 16121296 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 2 726 3 726 726 1046 71.0 0 MHKRLWVLNPLLLSLTLPAIAAEEENLIVSANRSQRTVAEMAQTTWVIEGSEIEQQVQGG KEFKDVLAQLIPGIDVSSQGRTNYGMNMRGRAIVVLIDGVRLNSSRTDSRQLDSIDPFNI AHIEVISGATSLYGGGSTGGLINIVTKKGQPEREVELELGSKSGFNNSNDHDERVAVAVS GGTDRASGRMSVAYQRFGGWYDGNNDALLLDNTQTGLQHSDRLDVMGTGTIELDDNRQLQ LVTQYYKSQGDDDYGLDLGENMSAVTGNGKAYTSSGLNSDRIPGTERHLISLQYSDADFF GQNLVSQIYYRDESLKFYPFPTLSKGKVTSFSASQQDTDQFGAKITLNSQVTDSWELTWG LDADHETFDSNQEFFDLAWSLPSGGMDNRTAYTTGRYPGYSITNFAPFLQNSYDINDIFT LSGGVRYQWTENRVDDFIGYAQQQGIATGLANSADTIPGGKTDYDNFLFNAGILAHLTDR QQTWFNFSQGVELPDPGKYYGNGTYSLVGDHYQLLRSVNVADSRLEGIKVNSYELGWRYT GDSLRTQLAAYYSTSDKSIVINRNDMTINVQPDDRRIYGLEGAVDYFIADTDWSLGGNFN VIKSEVKKNGKWQKWDVTLASPSKATAWVGWAPEPWTLRVQSQQTFDLTDGSGNKLDGYN TMDFIGSYQLPLGKLTFSVENLLNEEYTTLWGQRAPLLYSPTYGSPSLYEYKGRGRTFGL NYALTF >gi|283548478|gb|GG730299.1| GENE 1493 1605954 - 1606493 649 179 aa, chain - ## HITS:1 COG:ycfJ KEGG:ns NR:ns ## COG: ycfJ COG3134 # Protein_GI_number: 16129073 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Escherichia coli K12 # 1 178 1 178 179 287 93.0 6e-78 MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIKESVKTPRQECRNVTVT HRKPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDIATVAGALGGGYAGNQIQGSMQEND TYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKDPGAQIPLDNNGQLVLNNKA >gi|283548478|gb|GG730299.1| GENE 1494 1606662 - 1607966 1506 434 aa, chain - ## HITS:1 COG:ndh KEGG:ns NR:ns ## COG: ndh COG1252 # Protein_GI_number: 16129072 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Escherichia coli K12 # 1 434 1 434 434 845 97.0 0 MTTPLKRIVIVGGGAGGLEMATQLGKKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLD EGVDALSYLAHARNHGFQFQLGSVVDIDREAKTITIAELRDEKGDLLVPERKVPYDTLVM ALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGA TGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISSAAHNELTKLG VRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFMKDIGGLETNRINQLVVEP TLQSTRDPDVYAIGDCASCARPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKAYQYK DHGSLVSLSNFSTVGSLMGNLTRGSMMVEGRIARFVYISLYRMHQIALHGYFKTGLMMLV GSINRVIRPRLKLH >gi|283548478|gb|GG730299.1| GENE 1495 1608202 - 1608744 695 180 aa, chain - ## HITS:1 COG:ECs1486 KEGG:ns NR:ns ## COG: ECs1486 COG3150 # Protein_GI_number: 15830740 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 1 180 20 199 199 369 97.0 1e-102 MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDD RPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPYENMEGKIDRPEEYADIATKCVTNFR EKNRDRCLVILSRHDEALNSQRSSEELHHFYEIVWDEEQTHKFKNISPHLQRIKAFKTLG >gi|283548478|gb|GG730299.1| GENE 1496 1608766 - 1609791 944 341 aa, chain - ## HITS:1 COG:STM1209 KEGG:ns NR:ns ## COG: STM1209 COG1472 # Protein_GI_number: 16764564 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Salmonella typhimurium LT2 # 1 341 1 341 341 641 93.0 0 MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPEQLRELVRQIRSASRNHLVVA VDQEGGRVQRFREGFTRLPAAQSFAALHGLEEGGKLAQDAGWLMASEMIAMDIDISFAPV LDVGHISAAIGERSYHADPLKALAMATRFIDGMHAAGMKTTGKHFPGHGAVTADSHKETP TDPRSEAEIRAKDMSVFRTLITENKLDAIMPAHVIYSDVDPRPASGSPHWLKTVLRQELG FDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPINAERV TRLYHKGSFSRQELMDSARWKTVSAQLNQLHERWQEEKAGH >gi|283548478|gb|GG730299.1| GENE 1497 1610607 - 1611248 610 213 aa, chain - ## HITS:1 COG:ECs1483 KEGG:ns NR:ns ## COG: ECs1483 COG3417 # Protein_GI_number: 15830737 # Func_class: R General function prediction only # Function: Collagen-binding surface adhesin SpaP (antigen I/II family) # Organism: Escherichia coli O157:H7 # 1 213 1 213 213 324 87.0 7e-89 MIKMNRYALLAALAMFLSGCVAQREPAPVEEVKPVPEQPAQPQQPVPVVPSVPAIPQQPG PIEHEDQTAQPAPRQRHYDWNSAMQPMVGKMLQADGVKAGGVLLVDSVNNRTNGSLNAGE ATETLRNALANNGKFTLVSAQQLAVAKQQLGLSPNDSLGTRSKAIGIARNVGAQYVLYSS ASGNVNSPALQMQLMLVQTGEIIWSGKGAVQQQ >gi|283548478|gb|GG730299.1| GENE 1498 1611262 - 1611636 236 124 aa, chain - ## HITS:1 COG:STM1206 KEGG:ns NR:ns ## COG: STM1206 COG5633 # Protein_GI_number: 16764561 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Salmonella typhimurium LT2 # 1 124 1 124 124 209 86.0 7e-55 MTRGCIALSLGLLLLAGCRSHPEIPVSDEQSLVMESTILAAGITAEQPVLTTSDIQASAS SRLYNERQESVTVHYRFYWYDARGLEMHPLEAPRSVTIPAHSSVTLYGSANFLGAHKVRL YLYL >gi|283548478|gb|GG730299.1| GENE 1499 1611639 - 1611998 440 119 aa, chain - ## HITS:1 COG:STM1205 KEGG:ns NR:ns ## COG: STM1205 COG0537 # Protein_GI_number: 16764560 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Salmonella typhimurium LT2 # 1 119 1 119 119 198 98.0 2e-51 MAEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVTAEHEQ ALGRMITVAAKIAEQEGIAADGYRLIMNTNRHGGQEVYHIHMHLLGGRALGPMLAHKGL >gi|283548478|gb|GG730299.1| GENE 1500 1612238 - 1612861 422 207 aa, chain - ## HITS:1 COG:STM3997 KEGG:ns NR:ns ## COG: STM3997 COG0526 # Protein_GI_number: 16767262 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 276 64.0 2e-74 MKKISVFIAGLCLAFDVSAAQVTEGQQYISLNKTVHDVPSVLEFFSFNCPHCYQFEQVMH VSSRVAAQLPHDVKIIKYHVDFLPPLGKELSHAWAVAMALGIEDKIESSMFDAVQITRSI HSSADIRQVFIDAGIKPNVYDGAWDSFAVKALVSQQEKAANDVELQGVPAMFVNGKYQIN MQGMDTSDMNAFVQEYASTVNALLNKK >gi|283548478|gb|GG730299.1| GENE 1501 1613116 - 1613718 343 200 aa, chain + ## HITS:1 COG:mlr2120 KEGG:ns NR:ns ## COG: mlr2120 COG1309 # Protein_GI_number: 13471975 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 1 180 1 175 195 115 38.0 6e-26 MRYAKDHKEETRKRIIGVASQRFREEGIEKVGVAALMHDAHLTVGGFYSHFKSKEELIHE AIARAAEETYCKTFGGPDNAESLTLRQILTRYLSVEHRDAPASGCVVAALSSELMNRPED TRAMVSDKIMEKIHRIADCLAEDVDMDTRMRVARSVWAIMVGTLQLSRLIPDNKMSVQIL KDGIDNALALAGQTGMRQQK >gi|283548478|gb|GG730299.1| GENE 1502 1613732 - 1614628 292 298 aa, chain - ## HITS:1 COG:AGc448 KEGG:ns NR:ns ## COG: AGc448 COG0583 # Protein_GI_number: 15887611 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 293 1 293 296 340 62.0 2e-93 MDRTQLSQLIVFITVAEAGSFRAAADRLGIAPSAVSHAVSALEASMGLRLLARTTRSTRP TEEGANLLSRVTGPLAEIKAGFSGVMEGAQAPSGPLRVTMPLLAAETIILPRLAAFSARY PAIELDIRASDIFEDIVESGCDAGLRLGENLEADMIAVRADTPRRSVIVGAPSYFAGNPK PAHPRDLAGHNCIRRRFESGRVYRWELAHDGRAITVDVRGNLILPHQEHIRQAALAGVGL AFLFEDRVREDLREGRLVTVMEEWCPWFDGFYIYYPSRRQMRPALRAFIDFFRAPNAT >gi|283548478|gb|GG730299.1| GENE 1503 1614734 - 1615549 705 271 aa, chain + ## HITS:1 COG:AGc447 KEGG:ns NR:ns ## COG: AGc447 COG0667 # Protein_GI_number: 15887610 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 271 37 309 369 373 66.0 1e-103 MKQRQIGTMTVSAVGLGCMGLSQAYGAQDEAASIDTLHRAIELGVTFFDTAEVYGPWRNE ILLGKALKAHRDKVIVATKFGFTYNREQTEFGQITGTDGRPENARRVAEASLKRLQTEAI DLYYLHRADPKIPIEETVGAMAELVAEGKVRTIGLSEVSSETIRRAHAVHPVAAVQSEYS LWTRDVETNGVLETCRELGIAFVPFSPLGRGFLTGQVPATNTLDATDFRRNMPRFQQEHI EANRLLVKVIEDMAARKGVTAAQIALAWVLA >gi|283548478|gb|GG730299.1| GENE 1504 1616086 - 1617540 1127 484 aa, chain - ## HITS:1 COG:yeeO KEGG:ns NR:ns ## COG: yeeO COG0534 # Protein_GI_number: 16129928 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Escherichia coli K12 # 1 484 64 547 547 773 86.0 0 MNVSAALRQVASRTPWYAKRKSYKVLFWREITPLAVPIFLENTCVLLMGVLSTFLVSWLG KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTIFAS ILAAVIHYFGEQIIDVVAGEATPDVKALALTYLELTVLSYPAAAIALIGSGALRGAGNTK IPLLINGGMNILNIIISSILIYGVFSWQGLGFVGAGLGLTISRYIGAIAIIWVLMIGFNP ALRIPFKSYFKPLNLAIIWEVMGIGIPASIESVLFNGGKLLTQMFVSGMGTSVIAGNFIA FSIAALINLPGNALGSASTIITGRRLGNGQIAQAEIQLRHVFWLSTIGLTAIAWLTAPFA GVMASFYTHDQDVKEVIVILIWLNAAFMPIWAASWVLPAGFKGARDARFAMWVSMLGMWG CRVVAGYTLGIVLGWGVVGVWLGMFFDWAVRAVLFYWRMVTGRWLWKYPRPEREKYVKQP VAPE >gi|283548478|gb|GG730299.1| GENE 1505 1617998 - 1618117 81 39 aa, chain + ## HITS:1 COG:YPO1917 KEGG:ns NR:ns ## COG: YPO1917 COG0582 # Protein_GI_number: 16122165 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 1 37 319 355 420 63 72.0 1e-10 MSESTTNRALRLMGYDTKTDICRHGFRAIACSAQVESEQ >gi|283548478|gb|GG730299.1| GENE 1506 1618145 - 1618711 139 188 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283833527|ref|ZP_06353268.1| ## NR: gi|283833527|ref|ZP_06353268.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 188 90 277 277 382 100.0 1e-105 MNGFSFVNYINKNGAVVDGWVRNEDIIADDDQQKELTYSDFSWKINGQNVNLLGKATPEL NTWGKESGLKLPEPDNHGFNHGFESWALIIKNAMVIISQTNDIIERRLGFNDTYVSGITF VDDKYETARGVKVGDDWRVVTSKYGTKSKLDSGDECRFYQYFDMKLSFCLDSSDKVQSIL FENYPIKP >gi|283548478|gb|GG730299.1| GENE 1507 1619249 - 1619422 85 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNSPISLIISLKLYPVESGDSVAGWTRFDVLNQNLYEGYQGDYQEQAPVKESGANGR >gi|283548478|gb|GG730299.1| GENE 1508 1619394 - 1620200 159 268 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085518|ref|ZP_06353270.2| ## NR: gi|291085518|ref|ZP_06353270.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 268 2 269 269 479 100.0 1e-134 MKKILISVFIFFTVADAYGTCLSMDSSDSTTSITPPKEVMVGGIKRLYFYSSPNASCKQG NVFVINDDKLLAYYKSNGYVFVNYFDRNGKVIDGWVAENGLTNLPENKNNAVRPLSSIDF QVSYKNSSSISLGVTDLQFNAWAKNNKLNVSEPTLAGIDENNWSLSFSGGYIVFNEANAI IKNRLKYAVEPNSYETYLADFNISGSEFKTSRGISIGDEWNKVSDKYGIGETDEGDSCMY YPYFNKKITFCKNNNRVESIELTDIINN >gi|283548478|gb|GG730299.1| GENE 1509 1620288 - 1620758 79 156 aa, chain - ## HITS:1 COG:no KEGG:Ctu_19390 NR:ns ## KEGG: Ctu_19390 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 14 153 38 182 185 118 43.0 8e-26 MKPNLKLLTIFCALLLSIFSNFSFGASDISRSPESVVSHFYFDYLTAWDDSDVGHGLEQS QQAIDSFTTKHLQKLKSEDDSGSDYFTNVQEICPEWVSEITTNISLLNNDKAIVELTLGH LDSESKYKINLVKNNDRWLMDSVSFVSSATGHCADN >gi|283548478|gb|GG730299.1| GENE 1510 1620673 - 1620897 110 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSEAPKLKFEKMDKSKAQNIVSNFKLGFMVYIFPYSEFASLLAFKQSVVKIFTVNFVSLN NICNDEIRRQEYKI >gi|283548478|gb|GG730299.1| GENE 1511 1620966 - 1622270 209 434 aa, chain - ## HITS:1 COG:no KEGG:YPTB3598 NR:ns ## KEGG: YPTB3598 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis # Pathway: not_defined # 19 427 18 388 395 99 24.0 3e-19 MRWSQLFVVMVLFCQCAFAKDINYEPQELSPDYVKRLVSVFEKDLPDILKKLGFNNNVND ESVIRSYKNGDGKSILIGNLKNDNTDYALVPFTVLGDNGGASATYASEDDYYAVYHETPS GWVHISDLLLDSSMNQVNDETYTLDGIMDGFITAHTNSSYSFYNKKKGWTNLKRTENFMI KFHDDDLAKPFLVWLPAPTVLDNPVSFNVLDGQTNSENIGALFGPESGQSDEQFFYTVNY APLDKYVYHQYSNAAFIQKDNHFILGSLVGVPDNLTLEFNGVNVDNNITPDQLIKMFQGK YQITVTDADNAIDRRNNQFVEDDPDSNHGIVTIQNAATGLFDSDIKTPQGDHLFSKRLPW YTDGFDNWLNLPDTQSNPGDQKRAKYFNTTEITYTKSIGVDFPEEKLSPRAMFYFYKQRL VAIYMYYFYWVAED >gi|283548478|gb|GG730299.1| GENE 1512 1622416 - 1622961 325 181 aa, chain - ## HITS:1 COG:no KEGG:AXYL_05524 NR:ns ## KEGG: AXYL_05524 # Name: not_defined # Def: hypothetical protein # Organism: A.xylosoxidans # Pathway: not_defined # 1 178 3 179 193 111 35.0 1e-23 MSSEQFYKDMIAIAKAARKDEFDHIVSRPPTQEAVDLIKEKTGVKIPDNLLAFSLQYNGL SIFAKEELWPEPEFLEVRQAWEFQSGVILLGIEAEQLPEWASIMSIYDQFVERFGVRDIL PLLRVYGKTGHFWGARKDGAFVEVDGDEVTVVNKSFLEVYSEQIHALIERMHKWMAQKNK Q >gi|283548478|gb|GG730299.1| GENE 1513 1623070 - 1624032 -4 320 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283833533|ref|ZP_06353274.1| ## NR: gi|283833533|ref|ZP_06353274.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 141 320 1 180 180 360 100.0 8e-98 MPTGLSDTEGSYIRYRYENLFFYFDIKSFKRVSLFEKIHNNGTLYLIAQRKYGGHYWVHW LSDGSGNVLTFQSVSEAREKFKQCTSSSMLSLLVFATLSVVTYYFTDLYWLFFVWLTIFL CSLSWTLTSYSSLKQVSHPVMTELEGVINNATLDLFKYPSYIDDSSTVNVDSLKENLPDD LILIEGVASLTTIIKHDQFNSRQGIASDYVSVYMKCDDLDIQFQWNRVDKDYVALWGCLP PFISSGDEIIIMFNESQTMETNINRRITHGNKRGDYIYPVYVYNKVTGSLYRSAFSIGRK DKSIFQNISKSYPCYTNSNK >gi|283548478|gb|GG730299.1| GENE 1514 1624447 - 1624749 120 100 aa, chain - ## HITS:1 COG:no KEGG:Ctu_35740 NR:ns ## KEGG: Ctu_35740 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 42 81 3 42 325 79 87.0 4e-14 MQIIREIASSLGFTRCFIILKSGVSILEFVYRTDYGVIPWIFFEKFKPAEYEFTYGAEED SEHHNALQVGLVAWFYLDKGHYWLLMKRDDCGSVFIPVEE >gi|283548478|gb|GG730299.1| GENE 1515 1624911 - 1625711 536 266 aa, chain + ## HITS:1 COG:no KEGG:ROD_20821 NR:ns ## KEGG: ROD_20821 # Name: not_defined # Def: putative lipoprotein # Organism: C.rodentium # Pathway: not_defined # 1 263 45 307 309 472 93.0 1e-132 MPFAIMHEAVHGVASRYDWGNRLIGIVAGWAFPTSFLLQRRAHLNHHDNNRTDGELYDYY LDHQPKWLRNIWLYGGNLLGLYYFCVVLGNAIWLVAWWFYRSDVFVKKIGPALGFGAQIP ELIKLPPLAVWCELALAFVYQALLFWLLDLNILGYIACLWAFGLHWSALQYVNHAWTRRD IKNGAWNLKVLPFSRWLALNYYCHLAHHQHPAAPWFELPSLVDDQPRPTFWRIYFSLWRH GVRPAPPMGAPADIEFVFPAEKAPGR >gi|283548478|gb|GG730299.1| GENE 1516 1626527 - 1627021 275 164 aa, chain + ## HITS:1 COG:slr0309 KEGG:ns NR:ns ## COG: slr0309 COG1032 # Protein_GI_number: 16331878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Synechocystis # 1 127 285 412 473 82 31.0 4e-16 MQQIGKPTNRVSEYRRQISKLRENGIASLGCFVLGFDEDTEQSIHQTIKDIPALGLDLVR FSVLTPLPGTSLHQRLVNENRILTNDLSLYDNEHIVFKPKNMSPERLQALLHDAWRESYQ VKHILHRALSRPGSRWLRLAANIGFRLYAARLRREKVALFRPEG >gi|283548478|gb|GG730299.1| GENE 1517 1627018 - 1627608 550 196 aa, chain - ## HITS:1 COG:no KEGG:ROD_20831 NR:ns ## KEGG: ROD_20831 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 196 1 196 196 328 85.0 7e-89 MKKIVFLLLTLTSLSAFASTSDEAIHRELRQAVVLVESAINSGEYDKMLPVLSKDLRATP ITQEFIHGKEGIGPYFHKWFGKDKFLKSLNISLTADTQTELSADRTWGVVYGKGMEKYIL NDGRSYDIPTRWTATVVLEEGHWKIRTIHFGTNFVDNPLINEATQAINKVMYGAGGGGLL VGLILGFFLFRRKSQN >gi|283548478|gb|GG730299.1| GENE 1518 1627565 - 1628209 414 214 aa, chain - ## HITS:1 COG:YPO2813_1 KEGG:ns NR:ns ## COG: YPO2813_1 COG0671 # Protein_GI_number: 16123010 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Yersinia pestis # 1 195 1 200 332 77 32.0 2e-14 MNESFATRLKYYLLWMLPVSAVFFGLYPAINIFTTARNDTLALWLPVELSIPFIPAFIWV YLSMYLIILVPLFFLNLQEQKRLAITLMGVTIVGAIIFLLFPARLGFVRQLPDDPLYHML FALLLSLDRPHNLVPSLHVAWSYTVVLAITRRPRGWISPVLYLWFIAIGLSTLLIHQHHL LDVVTGFLLSLLVFYFTGKVYEKNRLPSVNPHQS >gi|283548478|gb|GG730299.1| GENE 1519 1628216 - 1629559 670 447 aa, chain - ## HITS:1 COG:slr0309 KEGG:ns NR:ns ## COG: slr0309 COG1032 # Protein_GI_number: 16331878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Synechocystis # 12 422 26 426 473 178 30.0 2e-44 MKLTLIKPNIGRKEHSLYVDEGRMEPLMLGILAALTPPDVEVVLYDDRMECIPYDEQTDL VAITVETFTARRAYEIADEYRQRGVKVVMGGIHATLLPEEVQQHADSVFTGDAETRWQEM IDDARVGRLKPRYDAPVGVGQVDGCHQALLPRRNVFRGKGYLPISLMQFSRGCRYACNFC AVSQYFGRRHYLRQVDDVVREITAQNSRFIFFVDDNIASDHRALAELCHALIPLKINWIS QASLDVTNNRPLMTLMEKSGCWGNVMGFESITPASLHDARKSPNVRRFNHYRDEIAALRD YGLQTWAAFTLGYDHDTPDSIARTVDFALQNRFAFAAYNILMPYPNTPLYNQLRQQGRLL FDGQWWLHPEYRFNQAAFLPQGMSPELLTDLCHQARSRFNSLPSIVRRFSDLRMTFQSFS RMSAFWRYTLLFRKEVHKKHRMRFGLR >gi|283548478|gb|GG730299.1| GENE 1520 1629556 - 1630839 753 427 aa, chain - ## HITS:1 COG:slr0309 KEGG:ns NR:ns ## COG: slr0309 COG1032 # Protein_GI_number: 16331878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Synechocystis # 12 391 36 415 473 187 32.0 3e-47 MGDYRTRDAMTPLSMGILAALSPGHDIVFYDERLERLPLSLPDVDLVAISIETFTARRGY QLADRYRQQGIKVVMGGFHATFMPDEVAKHADCVVSGDAEGAWEQLLLDAERGELQSRYE GSRQRGLDDYRLDRSIFTDKHYAPLALIQYSRGCRFACDFCSIHAFYPDGVRTRPVEQIR AEIEALPPGRFIAFVDDNLFASRKKLESLLAVLTPLKRRWGCQISIDVARDAALLDRLAQ AGCGFALMGFESLNSANLRQMGKQWNHAAGDYRQVIRALHARGICVYGTFIFGYDGDTPD TVRQCLAFAQENRLEIANFNLLIPTPGSSLYARLKEEGRLLLPDWWVSPDYRYGDPIFTP KGMSAQALTELCFWARTQFYSYPSIARRLLRINPARKWKNTLIALLANWVSHKEIARKQG KRLGEME >gi|283548478|gb|GG730299.1| GENE 1521 1630863 - 1631888 329 341 aa, chain - ## HITS:1 COG:no KEGG:ROD_20871 NR:ns ## KEGG: ROD_20871 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 341 1 341 341 488 72.0 1e-136 MHVVTATPQRNACLLRLLEENAMHGDIDLVMTRRPEYFSPLNNFGIEHSALALEGDRAVG MCRLTEHAGFANGEQHQLGYLGGLRISLSHRHRIRVLRAGFQHLRQLNSPERCYTSIASD NHRALRLLERGVAGLPAYRFLGDMHSLAISRRRGKRHHLWRIMPAERYDEAIDCYHRSAR RRQLAPALNVDWLRDSGATVLGCGGNNSLDACAVLWDQQAYKQVFVARYSLRAALLRPLY NGYAMAAGRIPLPGVGRTLDQSFLAFLAANDEEQLPALIEDALAWCSTRIMTVGIPAGFP GGERLINRTRAMVYHTRLYGVELSAQPEWDNRIVWPEIALL >gi|283548478|gb|GG730299.1| GENE 1522 1631888 - 1633234 960 448 aa, chain - ## HITS:1 COG:slr0309 KEGG:ns NR:ns ## COG: slr0309 COG1032 # Protein_GI_number: 16331878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Synechocystis # 26 414 36 421 473 197 31.0 2e-50 MRLTFIHPAIGHRKNESYLRSWQMEPLPVAALKGLTPASIETRFYDDRMERIPYDEPTDA VAIPVETYTARRAYQIASEYRRRGVPVIMGGFHVTLVPDEAARFADAIVIGEAESVWAEV IDDLRHRTLKPRYQGQQTDLRQVKVDRSLFQGKRYLPIGLIETGRGCRFPCEFCAVQTFY QRRYRRRDIDSVLSELNVLKAQKKLFFFVDDNFAGSLRESREVLPALAQANVRWVTQMSI NAAHDEGFVQALARAGCRGVLIGFESLNEENLLLMNKRVNTMKGGFSAALANLRRNGIAV YGTFVFGYDHDTLESFSEAVEFAREQSMYIAAFNHMTPFPGTPLYSRLEAEKRLRFDTWW LDDAYRYNELPFFPTNLTPQQVTDGCLAARKAFYGWRSMFQRSWRNRNDFFMLRNYFPIN LLHHNEIGARNGYPLGDEGWQGALLEVR >gi|283548478|gb|GG730299.1| GENE 1523 1633238 - 1634626 903 462 aa, chain - ## HITS:1 COG:slr0309 KEGG:ns NR:ns ## COG: slr0309 COG1032 # Protein_GI_number: 16331878 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Synechocystis # 39 420 36 413 473 228 35.0 3e-59 MDHLMYSQQRKMKLVLISPKGPLYRSRGGIFKRSLRYQPLTLTTLAALVPKTLPVEVSLI DESICEIPEDLDADLIGMTVITGTAARAYELAAGFRAKGITVVLGGPHVTLLPQEAARHA DSICVGYAEQSWPELITDFLNGNLQPQYLQGEDFHLDDPQLPFPQRERFDSKHFLTQSVF EATRSCAHNCEFCVAPSAWGRKQFQHPVEWVINDIRQFVSRTGKRKLIFVDLNLVSDIGY AKALFSALIPLKIKWFGLSTVLIAHNHELMELMARSGCKGLLLGLETVSDGSLKDAGKKF NGSVDYKMLIGDLHRLGISVQGCFVFGLDHDTTDVFDRTVELAIESGIDLPRFSVLTPFP GTPLYRRLEEEKRILTKDWSLYDAQHVVFQPNLMSVRELEQGHERAWKKVYRYRSIARRL WNAKNFQPLALTANLGYRFYAHHLHEFYTCDWPIEYSPERSA >gi|283548478|gb|GG730299.1| GENE 1524 1634633 - 1636159 671 508 aa, chain - ## HITS:1 COG:no KEGG:ROD_20901 NR:ns ## KEGG: ROD_20901 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 5 508 7 510 510 808 76.0 0 MNNCWHHFQQSHFRPPGSPRERQARWLMDCLRANQTSLYGEEKGFAAIGSIEEFQQRVPV VEYETLAPLIERVAQGQRNVLFCENALAFEKTGGSHSGGKLIPYSARGLADFRHALTGWL CETIRGHHLAQGHAYWSLSPVATRREFTCCGIPVGAGDALYLGEENLTAFAGLSAVPLSV GDVEEVADWQLLTLYFLVCCRDLKLISVWSPAFLTSLLAGLQTRQQALLALLSCGGDVAG HSLGADAEALCRYQRYLLLQETRQLWPELAVISCWADAASRMLADEMMQHFSGVYLQPKG LLSTEAVISVPDAHGQPTLCVDSNFYEFISDNGAILLADELVEDGEYSVIVTTNSGLYRY HTGDRVKCTGESEGIPTLRFIGRGEVYSDLVGEKLTEPFVISCLASLQGFAALAPDISTP GYVLLLDKALSGRNQPHLNDIENQLRHNPQYDYAWRLGQLAPLRCMFIDNPTDRYLCWRQ RQGKRLGDIKIPVIFTADDWRDVFQAGV >gi|283548478|gb|GG730299.1| GENE 1525 1636152 - 1636868 384 238 aa, chain - ## HITS:1 COG:no KEGG:ROD_20911 NR:ns ## KEGG: ROD_20911 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 238 4 241 241 397 81.0 1e-109 MANYRAYFQKISTLTDVRREQMAEIYFQSYAGSEFSRFLFDLENKDETLLLEYRGQLVGF SNVKFYEQEQAIIVYSGDTIVMPEHWKQQVLHRAWIMRMGLLKAQVPNKKLYWFLLVKGV RTYKYLKVFARKFYPHWLRDEPELQRLASHLAAEKFGPLYNVVNGVVECPPQYGYLKESL ARIPASLHSRAEVDFFLRKNPHYALGHELVCLCELAQDNFSPRYKKWFTHPEVEFFHE >gi|283548478|gb|GG730299.1| GENE 1526 1637024 - 1637380 189 118 aa, chain - ## HITS:1 COG:no KEGG:ROD_20921 NR:ns ## KEGG: ROD_20921 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 117 135 251 252 206 82.0 3e-52 MNIINIKYNQPLTILERAYGYFTDSRSIEQFTYQLGPLKEWTLADDFSLEVTLSSLRKRP ERDGGWSLMKSRAIDCLQPGQVLENDSDNLNLTLVFGKNFPDTLVCQMGDSDLLGATE >gi|283548478|gb|GG730299.1| GENE 1527 1638056 - 1642624 2624 1522 aa, chain - ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 6 995 16 988 1027 559 43.0 1e-157 MYFTDLKKKFLIWTQVFSQILLPFVTTFPVHAASETQTKQADTVPYSDTFSSLASTVSSN GSDGLKNMATNAATGAAASTLEEWLSRFGTARVNLSVDNDGHWDQSSVDLLTPLYDNKKS VWFTQMGLRAPDGRVTGNFGTGVRTFYLDNWMFGGNVFFDDDFTGKNRRVGFGAEAWTNY LKLSANTYVGTTDWHNSRDFDDYYEKPADGFDIRAEGYLPAYPQLGAKVVYEKYYGNKVA LFDTDHLQNNPSAVTTGISYTPVPLVSLAANYRQGQDSMNDAQFQVNIRYDFGHDWRYQL DPENVQAMRTLAGSRYDLVERNNQIILQYKKKSAQGVSKLTLQSVTDHSPADGLTQNTLQ VIATNSDNVPVRNAPVTWKTTGSAKLDSSAGVTNDNGVATVNLTNTSPETVELTAQSGSV TATQASHFDVVTVSHIVLTLSKDGSVADGVTTNNAVATVTDINNRPIANSKVAWTATAPA TLKNAELTTDVSGQARTQIVSTSAGAFALKASAGDLSATQTTHFVADNADAQITAFEVTT NNSPANGSTPNVALVTVKDPTGNPVSGANVDISADKTTVSFAAAKRATTTQQTDANGQLR VSFTDTVAETVTLTATLANGNNKTASAQFTADSSTAQLQNLQVTKNNSAANGTAANAAEV YVKDAKGNAISGMTVSWKADKSTVKFAGASTTDSNGKATVNFTDTTAESITLTATLVNGS NASANAQFIADSSSAQLQNLLVTKDGSVANGTAANVAEVYVKDATGNPIADQDVTWSADK AGVTFNPGGKTDASGKTTVSYSSTIAQTFQLSAAIQNGDKVSTSSLFVADTTSERIASFD VTTGAIANGSATNAAAVVIVDANNNPVSNATISWSVNGSAVLSAPTTKTDSAGKAAITLT DLKAEAVQVTVKLDSGTSLTKAVEFVADANSAQIGTFTVTTGAIADGSATNTGNISVVDT NNNPVPNATVTWNVTGSAKVGASSTTDASGNATITVTDTKAEDVTLTATVNGVSQGRPMT FVVDASKVNIQSLTVDIDNSAANGSASNKAVATVVDQNGNPVANQTVTWKSDRFTTTLTP SGVTDAEGKTSLTFTDTKAEPVLITATLSNGNSKSVNSTFVADSATAIVTQIAVNPDNSL ADGVTANVAKATVTDANGNALSGQQITWTADRSSVVFTPSGATDIGGNATASFTDTIGGS VNITATLENGNALTKSANFLSEQVTSLTSDLTTQDANGTDVITFTAKLTDSSAKPVANAA VLFSHTGDAVLSATEVNTDANGLAKITVKSTTEGSVTVTAKSKVNTSDVGQSRTVTFTSK HITTLLANGYTFATSTGFPSIGFSGATFQALIDNNATNNSDYTWSINQSWATVDNTGTVT FNNKPGTSTNALTISARPKAGGTVQSYTFFVKRWFVSAGQATGDETAPDGICSGMGMSVP SYTVMSNSGVGGYADRGAMGTLFGEWGNMNVFPSFSTPGAEGAGWTAEQGRNSRTYFFWG SGEVYDNNPNGKPMDVTCTESI >gi|283548478|gb|GG730299.1| GENE 1528 1643855 - 1644541 148 228 aa, chain + ## HITS:1 COG:no KEGG:Entcl_0627 NR:ns ## KEGG: Entcl_0627 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 9 228 12 232 232 185 41.0 2e-45 MLNKYGAQETIHHFEFAQKTKPLTSIKNVYSKLEAIGKPFELNTGMRLYFRDENQLSYII FLVEGCFSVYHQSSELNIGIGFSPTILNLVGIYNQYHEGQKPPRHFMVAETHCKGFKVPL ETFIEQCNTHYLWPDISQILVQRLMVMSMIEEQLVCSDAYSAVRSILLEIWLYPEDIRNN FNITSVIQRRTNLSRSRVMDILSALKQGGYIKIRTGKLIELNFLPKAF >gi|283548478|gb|GG730299.1| GENE 1529 1644762 - 1645052 85 96 aa, chain - ## HITS:1 COG:no KEGG:ECS88_3285 NR:ns ## KEGG: ECS88_3285 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 90 10 99 102 84 48.0 2e-15 MIQDHIAEKLEAAGLWRRAATRWLNVMLRIEYTVAEREWIRQRRIYCQSKITPVAVPEPL NFSDIARAASTTQARMGINKPRGITLRLQTEPPAEK >gi|283548478|gb|GG730299.1| GENE 1530 1646269 - 1646520 185 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085527|ref|ZP_06353292.2| ## NR: gi|291085527|ref|ZP_06353292.2| late histone H1 [Citrobacter youngae ATCC 29220] late histone H1 [Citrobacter youngae ATCC 29220] # 1 83 5 87 87 75 100.0 9e-13 MKKLALALAACSLLAWNVADAAGGQIATQAKTACQNNQTQCSQAKSAAKEKAQKETQAAK DACAKNQTACDNAKTAAKNAVKK >gi|283548478|gb|GG730299.1| GENE 1531 1646622 - 1647611 543 329 aa, chain - ## HITS:1 COG:no KEGG:Ctu_30590 NR:ns ## KEGG: Ctu_30590 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 30 329 1 289 289 202 36.0 1e-50 MNIHFAHTATRVSLIVLSLASHTAVAEMQLTDVDEQQINALFDRWNDVFNRASDAKPQTL YADQVEWYGQSLSAQQVTEREAAFVNKNKDYHQSIISEPAIQAVYEDPAEAASDDVRVTF VKEVSPPSGKEQNYPAEFLVKKLPQGWRIVSETDGVTRFNQKMKSGEEGDASVAKGKFDG RHESYVWTTSFDPRTGGICTEESDCNSLLWNSDPEIAPVYVTDRLIEGVIALPALDNSGR DRVVVHTGWWMGGWSPLYLYDIQQKQWIRDIPPITYNINFEENLTDDVIIKPDAARPGWV KIVNGDMDAVANNSDEVTKTTTERLLVLQ >gi|283548478|gb|GG730299.1| GENE 1532 1647632 - 1648402 615 256 aa, chain - ## HITS:1 COG:ECs3108 KEGG:ns NR:ns ## COG: ECs3108 COG4676 # Protein_GI_number: 15832362 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 254 1 256 258 315 61.0 4e-86 MRKLSFLGVLAIPFIAHAANGESVAIDAPLAGWHNQTGEKSYYSQQVNYPASSVNTRSDQ SVDAQIKGAIHGLPKGAQKPGVLVVNGISMPLRIEDDGSFQRPYIFPSGSNSVEVRSPDR QAAHRVQFYSRPGQGNVPAKLRIVLSWDSDNTDLDLHVVTPDGEHAWYGNRELQNGGALD MDVTTGYGPEIFSTPTPEKGPYLVYVNYFGGYGQQVLTTAQVSLVTNEGTPDEKQETFVI PMRNPGELTLIKRFVY >gi|283548478|gb|GG730299.1| GENE 1533 1648408 - 1650054 1102 548 aa, chain - ## HITS:1 COG:PA4488 KEGG:ns NR:ns ## COG: PA4488 COG5445 # Protein_GI_number: 15599684 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Pseudomonas aeruginosa # 4 548 11 549 549 547 54.0 1e-155 MRKLLFIVLLLASAAADAKGLALAWRRDNQDILLNLQAGQGEVAHQPLPAGLTTPLGSVW KLFVYAWLTDNNVADNPYHCTGQSSEEVYCCSVGQSIDREKALVQSCGLYFAPERWHIDA SDWRRYWQKRGGPAWLDDLHLLQPGTEVTVSSLLTALQQMPAQAEARKALLNLMVISPEN PLASALGGRLRVKTWSWHNPQAVDQREGGFAGWLTDGTPVWAGGPGTSKTVLAAYATALD KTLPVTSPVDPEECVDSRLFARYPIDAVYRVGETPAMVEGQLRGQFRVVFKNGNQLNIRS QGELYLRGAEHRWQILAHLSREEYVARVLEREASAKPTEAAKALAVVIRTYLQQQASHTN DCLYIEDSSSRQRVAPRPASAASRKIADWTSGLVLSGSPVQYHSYLTAENQLSWEHAVAL ADQGMRFDVILAQVWPQATLSSWEHAVSECHAMPEAKEWLLKQQRAWRSTLDREPGYAAT SQFAVCQLEHTGTPWVDRSRRRIYIRAFLRLQDRLDLTHEYLHLAFDGYPSGLDEAYIEG LARHLLME >gi|283548478|gb|GG730299.1| GENE 1534 1650058 - 1654683 4266 1541 aa, chain - ## HITS:1 COG:PA4489 KEGG:ns NR:ns ## COG: PA4489 COG2373 # Protein_GI_number: 15599685 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Pseudomonas aeruginosa # 24 1531 6 1505 1516 1572 54.0 0 MDTRSIESQLYRFVPFKLFNTVARYCLSLLAAVLILAPVTKSVADDYLPSSGYQPIGDTF FLLADSSFTSQEVAKVRLEAPGRYAQRFNTQEYGGADIRLYKITDPLAFLRQQKNLHRIT VAASYQGEGLSNTLSWLWDNWYGKSRRVMQSAISASARKQAIDVLPELKIGNAILAPTTY DHQPQFAPLKQFPLLKQFRYPLWDAKPIQPPAEVAMEGASSEFRETESGNVYIPLGKLKP GLYLVEALLGSYRATTMVFVSDSVVMSKISHNEAYAWVADKHAGKPVANATVLWSDGLGI LSSGVTQNDGSLRLSHVAPERSYLFGQDAQGGVFVSENFYYDSEIYDTKVYMFTDRPLYR PGDTVNIKMLARDYKNARDSVAAPAGKMKLTVVDANGMPVQSMNLTMDPHTGANTAFHLG KTATAGGYELQLQYGGAIYSSAFRVASYIKPPFEVSMLLSKPDYHSGEPISGTIELHYPD GRPVANAHVALSLYSQQLSMVGNDLQYQGRFPVDMKSTDFISNAQGQVALNLPAAEKPSR YLLTVSASDGEAFRVKASKEILIERGAAHYSLQAGQRFSKVNEPVTFHYSSAQPTAVKPT SYEWLRLEDQHTESAPIPASSTDSLTVTFRQPGTYNLMLRSANGMLLGATSHSVSGNDVK ANIGNVEIVLDKAQYQVGDVAKALITFPEPVSEALLTLERDRVEASALLSKGGDWLQLTR ISDTQYQAAIPVKATFAPNLTFSVLYTLHGQYSFQNAGIRVAIPKIAVNIVSDKLHYRPG DIVNVTISTSLQGKPVSAHVTASVVDEMIYALQPEITPTIDQFFNHPRRNNVRTSSSLSF ISYDQALSGMPGAPGRANYSARSVKMLERARRENVDTAAWQPTLTTNAQGQATFSFRMPD SLTRWRMTARAQNDDGLVGESTQYVTSDKPVYLKWSGPREFRHGDKPALGVFVFSEQAAK QTVELYTNYADNELHQMVTLHQGANYIALPHVPVVDGQWMGEIRQNGKTLDALSVNLRLT NENWSEKTNAAIVLSAGDNPLYLPPNATDISLRFTNTPQALYQSILDDLLSQPYGGAINT ASRLLPLSVAWPQMQQGDAQDIASLRAAIQNSRLRLIQMAGPGAAFTWWGEAGDGDAFIT AYAYYADWYASQALGLTLPDDHWSRMLALYSEQADEMPLLQRALVLTFADDMNLPVLTLA QGVEENFASRMADEPDDSSMSSSDSLVMADPTSPLGDAVARVLIYDLLQKHGHALSADEQ AMLQHSEEFIAASGQPFAQAAVLRGSRTNGQQAQTLLRQLAPNQPTLERALSLTWLSRTL QLATPVAEPVIQQAGWIKKKGVDGESFWQWRGHGVPDSVNVSNLDNPAEALVSLALPQGA PAPQNHVAKVEIRHHLMRLVAEKDALTFHLTPVTDGQVTSDALYLDQVTLTATGDTPLSW GEIQVPLPPGADVESTTWGIQIQSSDKEGAEPISLAQDNHESGTLHYMVPVKTLQGEQTF SHLVRFSQKGDFTLPPVRYQQVYAPQNVVYETDGIKAIQVR >gi|283548478|gb|GG730299.1| GENE 1535 1654617 - 1655285 395 222 aa, chain - ## HITS:1 COG:PA4490 KEGG:ns NR:ns ## COG: PA4490 COG3234 # Protein_GI_number: 15599686 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 34 222 24 212 212 301 73.0 4e-82 MACAVKGRCLVAAALLGIALLGVHTGWAQEAYVAQKLDPPQSSIFQAWFVRIVREQLRQG PTPRWYQHDCAGLVRFAANEALKHHDALWLRSNGMSNRYLPPELDITDNQRLLAQHWQLG AGKTSPYVDVARLIQYNARLVGRDINQARPGDLLFFDQGDDQHLMIWMGQFIAYHTGTVT KTDNGMRAVSVQQLMTWNDTRWIPDQSNPNFIGLYRLNFLTQ >gi|283548478|gb|GG730299.1| GENE 1536 1655270 - 1656964 1262 564 aa, chain - ## HITS:1 COG:PA4491 KEGG:ns NR:ns ## COG: PA4491 COG4685 # Protein_GI_number: 15599687 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 57 561 81 586 589 462 47.0 1e-130 MMSAIPVPFYRKKSVKISVAVSVILIGAIATYAAMSTMREKDPVIAAWAPKNDLGVDILK PDVLIDSLSLSKLPADILSVPFLKNTLTEDFVFYYQNNADKLGLMGSLQRIVYEHHLTLK DSLINELLDQPAKIALWRDRKGKLNHFIMVIHRGGLAKMLEPLAHVVASDSQLSKASPET IRVGSRDIALYKLRYNGQKSLLFASDGDKMVLLSGEGFLFKGDQQVADTTALLNDLFHDK QPWNEGFSLPSAAGNEAKNALQQRISVRSSYLAMGYQRFIPAFEGVRFDKDAKGWHSYLA LNGSDESEETSLDFSPVWQTMPSGAGLCVALPLSRRMPAYMLRHAGITPEVSQQIGDQFS GTAGLCWYPQSRLYSPLLVAQLTDAPGKSWDDSLATLFSQFVGKPSQPVEATNDNGVQRW QREIPSRYAPYPASQSHHPDAAGRFFRVSLAHYQQTVVFSLDDTLVDNAMRTLRKNFPPM SDVLPAKNTTALYFAPARLADIFKQEAYSSLPQEMEPVFYNAAQTLLYPRLAALAKEPAY AVTLPQGADVESAPHWVPLQWLAQ >gi|283548478|gb|GG730299.1| GENE 1537 1657027 - 1657515 477 162 aa, chain - ## HITS:1 COG:no KEGG:HCH_06499 NR:ns ## KEGG: HCH_06499 # Name: not_defined # Def: hypothetical protein # Organism: H.chejuensis # Pathway: not_defined # 13 150 9 150 153 78 35.0 9e-14 MSVSDEIINAESQEEFLSSESEKPPYKLYSVGGVAIATFFASVLMGGIFMAINYKRLGNK VAAWKTLGLSFLALVANLVIAGLLPANIPPMILSLPFLLAMGQIMNQQQGRFLTEHVNNQ GQLESKWKAFGIAFITMLAVGALLYVLFILSLSLLSPELLNG >gi|283548478|gb|GG730299.1| GENE 1538 1657624 - 1658250 135 208 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283833559|ref|ZP_06353300.1| ## NR: gi|283833559|ref|ZP_06353300.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 208 1 208 208 381 100.0 1e-104 MYIEYELSESEKQIAKIYLKRAYMKKVIKLNSDKRNLKKSMGAFSLQISVSIVIVLIIFS VFYFSYIPFTPTNVITYCVSIFISLIIIGVIKPMVLDKLYLKHISILNNSYHCRRKNILS LDVYNYMYRTERVVNKWNKIRLNIDDATGEVVFHNGVTQVFDRQTMIHHDIFRGVSFYSF VDSKTNKRNILPIPCGNGNQEQFLMALL >gi|283548478|gb|GG730299.1| GENE 1539 1658337 - 1659536 903 399 aa, chain - ## HITS:1 COG:NMA1480 KEGG:ns NR:ns ## COG: NMA1480 COG2755 # Protein_GI_number: 15794380 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Neisseria meningitidis Z2491 # 45 399 44 391 397 183 33.0 6e-46 MVKNKKYVAVGALCVAVVTALSACNDNGNASLQKGAAEANAMQAGKLTDYGESHLPRLAE KLRHSQSELTHIVFLGDSHTAADFFSGSLRQHFQSVYGDGGAGFISPMAVPGNRYSNVYF QNTYGLKLVTSRRDKNPDFTLGGNIVTPVSSNNGAQVVVRAPQGREQVQALYASPSAGQW SVNGAKYALAATGNGWAFSQPVTVGSTFSWSMSTAAPTALAGLMLTSTNGHGVVLSALGI NGAQVSMLDKWQNNWGGALKQLAPDMVILAYGTNEAFNTDLSLEAYRQTLQRQIETIRQS TPDAAILLIGPGSSIMHKQGQGCAQRQPALLKPIIAVQQQVARQERTLFWNWFDFMGGDC AIERWAAQGKARPDLIHLASEGYQESANALFGDLSAVLK >gi|283548478|gb|GG730299.1| GENE 1540 1659543 - 1660646 616 367 aa, chain - ## HITS:1 COG:NMB1274 KEGG:ns NR:ns ## COG: NMB1274 COG2845 # Protein_GI_number: 15677142 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis MC58 # 19 361 10 316 327 219 37.0 9e-57 MQVSDYSHIVYQTIKVSIAILVSALGVVWINQQAFNEYWMLHFHRETPWENTDAHWWSYG ATVGNALNSSEENFLKVLSGEKDDPAPAVPPVMVKSADCSALSLPHPSPVMTASNGPSSA IPPSDAQSQQPAAGSSPELISVLGPMKTSPEKVVLPAGKKVLMIGDSMMEGVAPQIISLL KKEHQIGGVNLSKRSTGLAYPSFFNWPKTTENALVREPDIGLLIVFMGPNDPWDMPSERN RHFLKFKSAEWESEYRQRIERILASAQQRNIPVIWALPPVMRKSKLNAGVSYLDTLYASE VSNSGGVTVDVNTLFGYKDNHYSPNAVIDGKKMRVRADDGIHYSPEGQRLIARAILTKIQ FPEKNKE >gi|283548478|gb|GG730299.1| GENE 1541 1660633 - 1662036 1117 467 aa, chain - ## HITS:1 COG:Cj0611c KEGG:ns NR:ns ## COG: Cj0611c COG1696 # Protein_GI_number: 15791971 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Campylobacter jejuni # 4 467 3 458 458 239 36.0 1e-62 MAEFFTPEFFLCFAIFFIVYWLVAPWAKVQNVLLLIAGYWLLYEAGWQALVIHLSLSLSV LLLVFLAMKGKGTKYLPLALMAIVLLYFFIFKYFSPLMVWGQGIIEALNLTFSLPMANIL LPLGLSFYLFNAISLVMAVIRGDIRDVNVISVLLYMNFMPTIIAGPINRATLLMPQIDSV HRSIIAYQRAIWLIVLAIVKLFWLSAWLDQQFVATVFSAPQREYGLASLAAVYGWAWEIY FNFSGYTNLVTGIALLLGYQIGDNFRHPYLAANMQDFWRRWHISLSTFIRDYIYIPLGGN RKGFWRAQLNVMIAMVLSGLWHGAGGTFIVWGALHGVGVVIYNVWTKWLKVKWSLTIPPV VARLLTFNFVCLAWIFFKANSLSDALLIVENICTVHIASVSMASACAVIASTLLIVIYPS VITLRTRCVPILNDIKWYAIPLVVIPVLTITFILAPTGIPGFIYAGF >gi|283548478|gb|GG730299.1| GENE 1542 1662806 - 1663774 995 322 aa, chain - ## HITS:1 COG:ECs2783 KEGG:ns NR:ns ## COG: ECs2783 COG0583 # Protein_GI_number: 15832037 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 7 322 1 316 316 561 90.0 1e-160 MYPERKVNFQQLKIIREAARQDYNLTEVANILYTSQSGVSRHIRELEDELGIEIFIRRGK RLLGMTEPGKALLAIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPAVIKA FRELFPEVRLELIQGTPQEIDVLLQNGGADIGIASERLSSDPLLVAFPWFRWHHSLLVPH DHPLVNTSPLTLESIAHWPLITYRQGITGRSRIDEAFARKGLVPDIILSAQDSDVIKTYV ALGLGIGLVAEQSSVEQEEGALTRLDTRHLFDANTVWLGLKRGQLQRNYVWRFIELCNAG LSVEEIKRQAMEPDEVMIDYQI >gi|283548478|gb|GG730299.1| GENE 1543 1663858 - 1664775 758 305 aa, chain - ## HITS:1 COG:nac KEGG:ns NR:ns ## COG: nac COG0583 # Protein_GI_number: 16129930 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 305 1 305 305 470 84.0 1e-132 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQIATLEGELNQQLLIRTKRGVTPTEA GKVLYTHARTILRQCEQAQLAVHNVGQTLSGQVSIGLAPGTAASSITMPLLQAVRAELPD VLVYLHENSGAVLNDKLLSGQLDMAVLYERSPVAGIYSQPLLKEDLFLVGTRDCPGQSVD LTAVAQMNLFLPRDYSAVRIRVDEAFSLRRLTAKVIGEIESISTLTAAIASGMGVTVLPE SAARSLCNAANGWMARITTPSMSLPLSLNVSARGSLSPQAQAVKEILLSLVSCPALENRE LQLVS >gi|283548478|gb|GG730299.1| GENE 1544 1665344 - 1666609 375 421 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|239523764|gb|EEQ63630.1| 30S ribosomal protein S15 [Helicobacter pullorum MIT 98-5489] # 10 400 10 392 397 149 28 7e-34 MALTDTAIRKLRPTDKPFKLGDSSGLYLLIKPNGSKLWYMKYRIDGKEKKLAFGPYPDVS LLTARQLRDSARSKMREGVDPSVDKKIAQQKKKNGQTFRQIAMNWHADHRRWSEHYATTV QRRLEMYVFPDIGDRLIDQIETEDLLFTLRKVESKGFLEITARLKNYVTDIMHYAVKKLL LKANPALYLDGEFAAPETNHYPALSLDKLPELLSRTDNYCGRLLTKYALKLSLLFFVRSS ELRFARWSEIDWQQKLWIIPEEREQIENVRFSYRGSKMKIQHIVPLSDQAIEILRQIEAL SGHLAFIFPGEYDQDKCMSDNTVNKALRVMGYDTKKDVCGHGFRAMACSALSESGLWSKE AIEKQMSHQERNSVRAAYIHKAEYLEERINMMQWWSDYLDANAGGYVSPYLYASMTENHH H >gi|283548478|gb|GG730299.1| GENE 1545 1667096 - 1668292 905 398 aa, chain + ## HITS:1 COG:PAB0761 KEGG:ns NR:ns ## COG: PAB0761 COG0477 # Protein_GI_number: 14521351 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pyrococcus abyssi # 41 392 27 356 372 59 22.0 9e-09 MKHLTHPSTPLTDTRSRRRALFAGCGAHAAHDGLTDVIYVLLPLWQAQFAMSYAWLGLLR GSYSGMMAISQLAAGSLARHWGRERLLVIGTALVGVAWFLAGMAGGLTMLLLALLLGGLG ASVQHPLASSLITDAHKSGGGVKEALAQYNFAGDIGKTLLPGLVGILLAVINWRESAALL GVFGLAAAGLLWWLLPSKPVHSDMTAKATSLTPGIASSRGLYVLTIIGMLDSAARMGFLT FLPFLLKEKGAGITATGLALTLLFVGGAFGKLFIGYVGARIGMVKTVWLTEFTTAVLIIM AVYLPFLALMMMLPVLGLMLNGTSSVLYGAVPDLAGRKNIEQAFAIFYTGTTGGGTVAPI LFGRFGDISGIPHAIMLLAATLLLTLPLAWYVGRRQEA >gi|283548478|gb|GG730299.1| GENE 1546 1668342 - 1669565 676 407 aa, chain + ## HITS:1 COG:mlr5883 KEGG:ns NR:ns ## COG: mlr5883 COG0436 # Protein_GI_number: 13474900 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Mesorhizobium loti # 11 402 2 393 396 330 43.0 2e-90 MNTGKPPPGRLSHRALKLSAPGTSSMRSKANALKESGVQIINFAAGELAFDACQYMKAGA IDAVNGAKNRYTPPLGLPQLRETISRHVSQRCGIPVAASEIAVTAGAKQALFNTAMVLLN PGDEVIVPRPYWETLPTQIQLAGATPIFVDTRDDNYHLSCRAVEMALTPRTRMIVINTPN NPAGTVYQREQLTETGKLALEHGLWVVFDECYRTLLRPPHEHHNILSLVPALKSQTVLVD SFSKSLAVTGWRVGYACGPSDVITAMHNLQGHTTSNPNSLAQWAALDTLNADTRAFTDEV NQFLETQRQVACSHLDQIDSISYAPAEGAFYLYIDISRLSGRRHDDTRICDVEHLADLLL SEAHIAVVPGSGCGDPGSIRISYAVSHVELIEGLTRFEQFISKLVAD >gi|283548478|gb|GG730299.1| GENE 1547 1669643 - 1670488 303 281 aa, chain + ## HITS:1 COG:no KEGG:PFL_2139 NR:ns ## KEGG: PFL_2139 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens # Pathway: not_defined # 1 274 1 275 276 416 71.0 1e-115 METLKDTFTDYVNLALVDVQDRHLVDALICGFHHHSDKLNKYCSTYEYITSGNWTTSSLC TFFCGWRSPDGAAHAVSAIIVRLLQESEPMGDDNRLNMLEAARHCGEIIVEDVGLGEMRA HLHHSKLYYRMASAICGSDNWRLQDRFLDPLTSEFSAWVGQKRPLAQDLTEAIEMMMLTE LFNTGEYNLMTPMWKRWLQDVRGHSSAEASRIATFLSAHCGRVEARHFQHATEALCLYTA STGQQINYQRIENLSREYVARACEHLEKMAAVLKHETVSVD >gi|283548478|gb|GG730299.1| GENE 1548 1670548 - 1671441 291 297 aa, chain + ## HITS:1 COG:mlr9115 KEGG:ns NR:ns ## COG: mlr9115 COG2513 # Protein_GI_number: 13488216 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Mesorhizobium loti # 7 292 7 287 318 125 27.0 7e-29 MVNNNVFRSDLATLFNDKRCLRVLEAHSPLSALLAEHTRLELVTGEHVSYDAIWSSSLTD STLRGLPDIEILTPGNRLHGIHEIFDVCSMPLIYDADTGGKPEHFAIYIKMLERAGVAAV VIEDKCGLKKNSLLGNSVRQEQESVESFCEKIRIGCASREHPNMMVIARCESLILDNGMA DAIARSVAYVEAGADAIIIHSRGKDGREILEFAKLFRQPGVQVPLICIPTSYTHLRFDEL ENAGFNGVIYANHMLRGSYLAMRNIATGILANGRTQELESSCLGIDEILDLVPGTRW >gi|283548478|gb|GG730299.1| GENE 1549 1671743 - 1672207 194 154 aa, chain + ## HITS:1 COG:no KEGG:YPTB1664 NR:ns ## KEGG: YPTB1664 # Name: not_defined # Def: hypothetical protein # Organism: Y.pseudotuberculosis # Pathway: not_defined # 1 154 1 152 152 253 81.0 1e-66 MDTVEELNGTYFYAGKSNLTAAELLFMVFCENTASQFGIGVADFGAIVALVSGRNNLWTR AKPIGATKGTSYASKAARTVFKKSKFPFGISLPTWLGGYTPWTARRVMVRNIAPFVGRSI PLIGEIILASDVSQITYRTLRDYNTIARGNDKLW >gi|283548478|gb|GG730299.1| GENE 1550 1672201 - 1672527 232 108 aa, chain + ## HITS:1 COG:no KEGG:SG2035 NR:ns ## KEGG: SG2035 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 108 1 108 108 181 85.0 6e-45 MVASLEQQVYELVRPYAGTYLFNIRQMELAPEIDLDTDLNIDELEAEDLMNKFFEQLNVE RGNFRIETYFPHPLFSWNPFKKTESIPVPDFTIGMLIESAKAGRWLYD >gi|283548478|gb|GG730299.1| GENE 1551 1672546 - 1673031 339 161 aa, chain + ## HITS:1 COG:YPO0973 KEGG:ns NR:ns ## COG: YPO0973 COG3157 # Protein_GI_number: 16121277 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Yersinia pestis # 1 161 1 163 163 202 60.0 3e-52 MAVPVHLFLTDDGGAVIRGSSDVKDREGSIELRSLHHSLAIPTDPMTGKVTGTRQHSPFQ FTKELDSSSPYLFKATATGQTLKSAEFRFYHINDAGQEVEYYRITLENVKVISVSPVMHD TRGCPGTGHMEEVALNYEKITHLYKDGNLLAHDAWNERQTA >gi|283548478|gb|GG730299.1| GENE 1552 1673834 - 1674511 512 225 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833573|ref|ZP_06353314.1| ## NR: gi|283833573|ref|ZP_06353314.1| hypothetical protein CIT292_07643 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_07643 [Citrobacter youngae ATCC 29220] # 1 225 1 225 225 454 100.0 1e-126 MSSLSDLKERLQYFCYSASPCGESEELLTILDINRKPCGVMHKECAIRWLGYTEAWRERF PGEPVYHHTSTFRLALEILSSHTLNQATVIRKLADTDFYSPDDLRQIRQSLSSVLYGFGF RLAEVRIACGYHEVQGGLYALTESLFQLATAVFSDHTQQLPLERAWLDNLAQSLTLKVIT LDEMLLQPGCFEGDESATDELSAVSTAMKSLLLDVALVRGGCWQQ >gi|283548478|gb|GG730299.1| GENE 1553 1674524 - 1674727 319 67 aa, chain + ## HITS:1 COG:no KEGG:Entcl_4051 NR:ns ## KEGG: Entcl_4051 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 67 2 67 67 72 65.0 4e-12 MNLTPVEPNASELVGRSRVLTEVMLENPDETGPNYILLILLAEQLQRLHDILEADEVRRM QEDESPL >gi|283548478|gb|GG730299.1| GENE 1554 1675540 - 1676406 667 288 aa, chain + ## HITS:1 COG:YPO1092 KEGG:ns NR:ns ## COG: YPO1092 COG0582 # Protein_GI_number: 16121393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 1 287 4 290 298 332 61.0 4e-91 MGRLGGEMKALAKHCGGSHKTVNDRIHIMQRFDLHLRALNVQIQRVAQIKVRHIENYIHE RLAQGIGKRTLQNEMASLRAVLQQAGRKQMAEHERLTNKSLGLSGASRNGARQAITPEHY RYVLEVARVKDPGLAAALELSRLMGLRSQEAVQSAQSLKTWKQAIERGETRLTVVFGTKG GRPRETVILDTSAVKKALDNALAVTESRNGRLINKPDLKSAMDYWHNQAVRIGLTGAYSP HSLRYAWAQDAICHYLAQGFSRKETLAMVAMDLGHGDGRGRYVEQVYG >gi|283548478|gb|GG730299.1| GENE 1555 1676569 - 1676928 107 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833577|ref|ZP_06353318.1| ## NR: gi|283833577|ref|ZP_06353318.1| hypothetical protein CIT292_07648 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_07648 [Citrobacter youngae ATCC 29220] # 1 119 1 119 119 234 100.0 1e-60 MKLTFLTLLILHINSLVDSGKYNDITIDDIHDAIEKKSLLQFIKKRCGKDIDLSLHLYEG INFESEYEERMNSLYYGYAGNESRKWGVRNQGLCLMLAWTNELIQMYASFPNEYPLEID >gi|283548478|gb|GG730299.1| GENE 1556 1676937 - 1677158 57 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283833578|ref|ZP_06353319.1| ## NR: gi|283833578|ref|ZP_06353319.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 73 1 73 73 117 100.0 2e-25 MLTVLDLQTIASYGGGMIIDAKSITINDLKSIASYASNKQAQIIIKNASIIPAIELQSIA SFSKGCVVFDFCG >gi|283548478|gb|GG730299.1| GENE 1557 1677740 - 1678216 54 158 aa, chain + ## HITS:1 COG:no KEGG:Alvin_2533 NR:ns ## KEGG: Alvin_2533 # Name: not_defined # Def: hypothetical protein # Organism: A.vinosum # Pathway: not_defined # 4 157 2 154 155 96 34.0 4e-19 MDTETITQLLFVQQRLQILHLGKHYGEFPDSYLYAWERGVYPFFDGTDGSVDKKPHELYK DSFSISESEVEFIIKRFNKAYDEKEKLSFYKLEDELHISSRTKSGWTRGKLLRICRYIFL EEEYDTLFWSNLIENGACPAEAHGILRKFDRDSDIHFY >gi|283548478|gb|GG730299.1| GENE 1558 1678653 - 1680056 225 467 aa, chain - ## HITS:1 COG:no KEGG:Shewana3_3856 NR:ns ## KEGG: Shewana3_3856 # Name: not_defined # Def: hypothetical protein # Organism: Shewanella_ANA3 # Pathway: not_defined # 1 467 1 480 480 674 64.0 0 MKVTILNEPLLEFGRGTHICPRSGIETLGVYDTRDENRKSEIRLGIVGRGEGIDALDLWL ERCRQGILGKESNLPNLFRGFGGVNERYGFSTRLLSSPAYTRPLQKSELNKILRLTNRDE RVRAAVNLFYEQIRFLAENRVVDVVVCVIPGDMFDLLTQSSASDDNLEDELEHNFRRLLK ATSMHLGVPLQLVLEKTINQDKIASQQDDATKAWNFITALYYKGNRTVPWRLVEEKYKPR SCYVGIGFYKSRDGDTVSTSLAQVFDEFGHGVILRGTPAALDKDDRRPYMNEQMAYELLC AALSEYDSALMHMPARVVIHKSSGFRDTEIQGFNRALDERSIRSRDYVSITDVDIRLFND SNYPPKRGTLLTFSENDGVLYTRGYIDYYKTYPGMYIPNPIRVMAYENDSSLEELCEEIL GLTKMNWNNTQLDGRLPITLECARKVGEIMKYVDPQQKPQVSFSFYM >gi|283548478|gb|GG730299.1| GENE 1559 1682445 - 1686881 2342 1478 aa, chain + ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 17 1001 69 1022 1027 527 40.0 1e-147 MPYGDTMSTLASAISDNGSEGLKSAAQNAATGAAASTVEEWLNNFGTAKVNLSVDNDGNW DQSSIDLLTPIYDNKKAVWFTQFGLRAPDDRVTGNIGTGVRTFYTENWMFGGNIFFDNDF TGKNRRVGFGAEAWTNYLKLSANSYVGTTNWHDSRDFDDYYEKPADGFDIRAEAYLPEYP QVGAKAMYEKYYGNNVALFDTDHLQSNPSAVTLGISYTPIPLVSLATNYRKGQDSMDDAQ FQVNVRYDFGHDWRYQINPDNVRAMRTLAGSRYDLIERNNQIILQYKKKEEQGVSKLAIQ AITDNSPADGLTQNTLQAIATNRDNVPVANAPITWATTGSARVDTPTSVTNSQGIAIVNL TNTTVEAVQVTANSGAVAASMTSHFNAVTVSNLALAITKDGSVADGMTPNAAVATVTDIN NRPIANTKVSWVVSSPAVLKNADVSTDANGQARTEFISTQAGPATLKVSAGDMMAEQKSS FVSNSANAQITDFTVTTNNSPANGTTPNMALITVKDTNGNAVSNVNVSVTADKSTVSFIA LKSARTAGAAMQTDVNGQLRVALTDSVVEAVTLTASLDNGNTRTASVQFTADATTAQIQD LKIIKDKSTANGSMANSAEVYVRDVNGNAVSGAQVNWSADKPTAAFSASAVTDVSGKTTV QFTDSVAEAVTIKAQLANGSSMTASSSFIADTATAQLQDLLVTKNGSAANGSDANTAQVY VKDAAGNPIQNQDVTWSVDKTGITLVSGGKTDATGKTTVSYTSTVAQTFQLTATLQNGNQ LSASSLFIADSASEKISAFIVTSGAVANGSATNTATVTVTDANNNPVQNVAVAWSADGSA TLSSASDKTDAAGQAKITITDLKSETVNITVNLDSGVSQTKSVEFIADSNSAKINTFTVT TGAIADGTTTNSGNVSIVDTNNNPVANATVTWSVTGSAKVSAASSSTDIDGNAAITITDT KAEDVTLTVTVNGSSQGKAMTFVADASKAVIQSLTLDTNSSVANGSAQNKATITVVDENG NPVANQTIGWSADKGTVTLTPSGKTDMAGKASVTFSDTKAETVAITATLTNGNHASVSSL FVADSTTATVVSIIVNPNNNLADGSGTNVATALVEDANGNPLQGQVVTWSADRTSVKLTP AGNTDMNGRASVSLTDTVGGVVNITATLNNGDSGTQQANFLAITLSALSSDLTTQDADGS DGIIFTATLKDSSGAVVSNSPVAFIVTSGSGTLSAAEAISNASGQATVKLTATTPGSVTV SAKSKINAADPGQSRTVTFTEMKFTDIQVNGHSYNSNAGFPQTGFVGATFQLYINDDTSR NTVYDWTASQNWVSVDSTGIVKFTSSPDAGSRSVTISATPKSGGTPLVYSFSIQHWFSNQ STTSDATTAASRCAAQGYSAAPYKLLTNAAVNSTGSRKIGTLWGEWGSMGAYGNGWKSDA YWAQEPYTTPGEYYGVNLSSGYLTFADENHPYYTVCIQ >gi|283548478|gb|GG730299.1| GENE 1560 1687005 - 1687613 263 202 aa, chain - ## HITS:1 COG:no KEGG:KPK_2631 NR:ns ## KEGG: KPK_2631 # Name: not_defined # Def: transcriptional regulator, LuxR family # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 195 1 195 206 271 66.0 1e-71 MINILIKESDSLFQYGLTSFFNEFFVHEDQRIDFNFSYTSESVKMADIIVLSLCPGESFI CFPELLKRKGGIVIGFIDDEMRVSAQSSCFQDIIFISRRAPVTQVRAVLHAAWQRTQREG YRQSSVSCFDCQQQTLTPQQIRIMIGLYKGRSIMQIADELMISDKTVFAHKYIAMRKFNL RSDYELILLVNKMIEREICKIF >gi|283548478|gb|GG730299.1| GENE 1561 1687768 - 1688367 377 199 aa, chain - ## HITS:1 COG:YPO3881 KEGG:ns NR:ns ## COG: YPO3881 COG3121 # Protein_GI_number: 16124014 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Yersinia pestis # 2 192 54 240 248 140 44.0 1e-33 MLFNSNAYPVIVQSWVDDGSPDGTPEKAINSPVMPLPGIFRLEPGERKSLRLLATQMPLP TDREALYWLNIYEIPPADAHLPKEAMVVKVAVRLQLKLFCRPAHLEQAVDDVAAKQQFSI IRQPGSLALKVANPTPYYATFDSAEVTDGTESQQINIGMLAPFASKTLRLNGNQLSFPKK VHFLLINDDGNRVERNDTL >gi|283548478|gb|GG730299.1| GENE 1562 1688493 - 1689839 689 448 aa, chain - ## HITS:1 COG:no KEGG:Rmet_1664 NR:ns ## KEGG: Rmet_1664 # Name: not_defined # Def: hypothetical protein # Organism: R.metallidurans # Pathway: not_defined # 9 448 24 475 475 360 50.0 5e-98 MKKHLFMPMLLVVGIGLPQLSWAMCYRITGTNTNSASNYYTEPGKGTAASWDGMPDGAGS IGTLPTVVNLNNSAFQPDGTLLATGIVPMVGNQIYNPEQILFRCQSSDINNLYEYYATNG DSTYAGHVEVGTAAGLPQSYQTYVPGMALRATNMLTGEYYSRYWKARQLTNLDTDSQGWL LVKAKNFSNTKVELFRLSTSAGGWGATSTGIYPQSQPATYIAFKGPGFSNGLSVGADSNS QYDGWYGYWPGGVNLYNRLYIRRSATCVVNNVTPFVLFPTISVSQLQAGATVRQPINISF NCQTGSPANSGVTSFTSGVAANQTAMGILVNPDNAATATSLGLTSGSGVTYLVSDNYGTD PSVATGVGIQISRTNGTPLNLLSSLSGSVLGGNAAGWYPLLDDAVGGSVVSGVTTYTKTL NATLKALPGKPVTAGKVSATAQVIIQVQ >gi|283548478|gb|GG730299.1| GENE 1563 1689855 - 1692506 1356 883 aa, chain - ## HITS:1 COG:YPO3879 KEGG:ns NR:ns ## COG: YPO3879 COG3188 # Protein_GI_number: 16124012 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Yersinia pestis # 59 882 39 875 875 677 45.0 0 MNMINKIPPQDDFFKNKSIFALGLPFECKTRLKPLVLLLWMMTPLMVSASDVLVPAKTEQ FEFDNSMLIGSAKDQNILSRFDKADAVAPGEYQVDIFINGNFYNRETLLFSADKQKQVSP CFSREQLVAIGILPGSIQAKDDHDTCLRVTEQVQGSSAQFDFSLLRLNVLIPQAQMMRTA RGAVPLESLTAGETVFFTNYDSNFYRTQASGNYNSDSTYLGLNSGINLGLWQLRQLSNYT RYSTNNGPDSSHWKSVRTYVQRPLQAINSELTLGDSYTSGSFFSSLGFLGIQLETDDRMI PESQRGYAPTIRGIASTTAKVTVSQSGTQIYQTTVAPGAFVIDDLYPTSYEGDLVVEVQE ADGRVSSFTVPFAAVPGSMRPGRSHVSLSAGQVRDIGDSNDMFADATWQTGLTNAITANS GVRVSDGYQALLGGAVFASELGAFGVNAVYSRANMFGNYLTGWRFGTNYSRTFVPTSTTL ALAGYRYSTQGYRDLTDVLGVRSAANSDSTWTSSTYEQRNQFVVTLSQGLGQLGQTYVSG STTTYRGGRGRDTQYQVGYSNHYNSLSYNLSLSRQQTGRTRYGVQSTDVNDGSSFSNSRT ENVFMFSVSLPLGAGSRSPILTSGYSHQSDNGGHDSYQSSLTGTLGESQNTAYSLNAAYD NGGGGSSAGASLTQQLPFATIGGSLSHGKDYTQYGASARGAVVAHAGGVTPGPYLSDTFA LVEAKGASGAEVGGGMGATINDSGYALVPSVIPYTFNDITLNAKGISNPNAELIDNQQRV APYSGAMVKVHFRTLEGYALLIRLAAGGEEQLPLGADVYDNKNRVIGLVGQGNQIYARAS SRQGTLKIKLGDAAAGQCLVNYDLRDLEMNKSMYHLTLPCRRN >gi|283548478|gb|GG730299.1| GENE 1564 1692559 - 1692909 115 116 aa, chain - ## HITS:1 COG:PA2129 KEGG:ns NR:ns ## COG: PA2129 COG3121 # Protein_GI_number: 15597325 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Pseudomonas aeruginosa # 1 115 133 247 248 82 35.0 2e-16 MSVILRNRLKIFYRPKDIVGDPDSVAKQIHFSLKEDNGRWELVAENTSGYYASVITASLS VGAQNIPFQASMIPPKTTVTWPTNKKGQSISAASKVKFTLINDYGGQTYAQADLAR >gi|283548478|gb|GG730299.1| GENE 1565 1693357 - 1693896 176 179 aa, chain - ## HITS:1 COG:YPO1922 KEGG:ns NR:ns ## COG: YPO1922 COG3539 # Protein_GI_number: 16122170 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Yersinia pestis # 25 178 22 175 176 122 51.0 4e-28 MNKKLIAVVFTSATVLGTASTTVYADNTIKFQGEVADQTCTVNVNGNASSPLVLLPTVPA SSLTTAGTTAGTTNFTIDISGCTASTSSTAIKTIFVGNNLTTNGRMGNTGSATNVSLQLV DPATPATPLDLTGQTGAPGLNLAANATSASHDFAVQYYSEGSATAGSVLGSVQYAISYQ >gi|283548478|gb|GG730299.1| GENE 1566 1694377 - 1695042 193 221 aa, chain + ## HITS:1 COG:no KEGG:KPK_2637 NR:ns ## KEGG: KPK_2637 # Name: not_defined # Def: cyclic nucleotide-binding domain protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 18 221 21 223 223 207 48.0 4e-52 MNPIDTKHLSSDYSNSTLAKKPLEHIQILLDAIAPYGEKITSVKGEVLRYQTNGRRYCYL LESGSISLNRRGDGMVLNSERSPFIMGISNQSAYGDRLYVRALEKSSLIRLPLERFNLLL EKFSLWESTCALLIYTSSRIFEHCTMITQMSSYDIVKFHLNQLMHESPSYRTSITAANYI KERTYLSRSSIMRIISDIKSAGLLSIEKGVLIDLKPLPLKY >gi|283548478|gb|GG730299.1| GENE 1567 1695141 - 1695779 271 212 aa, chain + ## HITS:1 COG:no KEGG:ECL_02384 NR:ns ## KEGG: ECL_02384 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 14 212 11 209 209 162 41.0 7e-39 MSDSFWATKLMTPSPFTESIIAKLEPHCEIRNISPRKRLYPKSGGKYYCYLLLKGYVSYH RDKNDIAVLTASAPTLFGLNYIASENITTYIKTLPPAIIGVMPLEKAIEIIEEHHLWKAV AQHMMVLSNKLYIINEQMSAPTSYELIKFLLLQLMSENESYRKSITAVNYILGKTQLSRS GIMRILTNLKAGGYIEIHRGCLIRLNKLPAKF >gi|283548478|gb|GG730299.1| GENE 1568 1696052 - 1696438 279 128 aa, chain - ## HITS:1 COG:PH1844 KEGG:ns NR:ns ## COG: PH1844 COG0438 # Protein_GI_number: 14591592 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pyrococcus horikoshii # 8 118 265 379 381 74 33.0 4e-14 MVGHQNRPEDWFPAFDITISPSFYDEGVPQGVMQAMACRIASIATDAGGTQDVVKNNHSG LLIPMNNLVAIQESIEKLYHNSSLREQLAEQGYKTVMANFTQDKMLDAMEDIFARAIQGN KLSDPVRQ >gi|283548478|gb|GG730299.1| GENE 1569 1696572 - 1697042 -174 156 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MANRKPATTPIKNLFSGKLSAVLHVCFSRGLNRCISTPLGTDVDWENGTPTAEYCKRSAS PVVTIWLHLRENSQRFAIFFRISPDECRVLIIGAIDNVIETSAQSQVSMELWQLITSISF RCSKNQVRSILKLAQFFLINGKLTTFNPACLAAVLR >gi|283548478|gb|GG730299.1| GENE 1570 1697485 - 1698252 289 255 aa, chain - ## HITS:1 COG:RSp1229 KEGG:ns NR:ns ## COG: RSp1229 COG0596 # Protein_GI_number: 17549450 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Ralstonia solanacearum # 19 238 29 255 272 79 28.0 7e-15 MQSLFSLTAGASVRWHDLPGWGTPVVFIHGLGCASSYEYPRIVADPAFGGRRAILIDLPG YGFSDKPRDYDYSITHQADVVIEVVNALMLPRCHIYGHSMGGSIAIEVAERLRGRTDKLV VSEPNFYAGGGEYSRLLVAKPEADFISQEYDRILANHTTPWKGSAQNAAPWAMWRGAKSL IDGTSPSWMETFLNLSCSRTLIFGEQSLPDSDFQYVHHKGISVAIVPQAGHSMSWENPSA LAAALHKEFSQEPSL >gi|283548478|gb|GG730299.1| GENE 1571 1698506 - 1698778 155 90 aa, chain - ## HITS:1 COG:no KEGG:ECL_04312 NR:ns ## KEGG: ECL_04312 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 76 93 168 175 105 75.0 5e-22 MRCERLTQIWLKNLELSTHEQIMLRLLRAGMTMDEVANKLNTSVKSLYRERTQLYERLGM ANFNEACLFIFKNELLKYPRELPDRAESRK >gi|283548478|gb|GG730299.1| GENE 1572 1699708 - 1702158 1057 816 aa, chain + ## HITS:1 COG:no KEGG:ECL_04313 NR:ns ## KEGG: ECL_04313 # Name: pgaA # Def: biofilm PGA synthesis protein PgaA # Organism: E.cloacae # Pathway: not_defined # 1 816 15 826 826 1056 67.0 0 MERMAHFNKLFIYHNTTLSCSISLLLLCPTLAQGVEKSVYDQQIQQARIGHYAPYLQYVQ YYQQHNALNPEQVADWLQIALWAKRDHDVIQVWLRYQVYMPLPARGVAAAAQSWRNLKEW QNALSLWKQACDLEPNNDDYRIGYIKTLADAHMDKQALREAKKLLAEQQTLAHLQTLAYV YQMQGKNRDRLLIDTLAHNINPDDSELRINLVNSLESNRVSIPALKLAPKIKLLPASYRS LELNDAAERVRLAGMPTLTEQQRIKLAQATLKRYDALLTLWKNDPHAQSDIIQARTDRLG ALYAAGYYAKVISEYQSLKSTQPAFPDWAIGWVIASYLKEKNARAAFDLLAQHPKYKPDP QDDEHALFFALLDTGQYRAAQQYVNRIAQNTPWARYDYGDASAQPNDQWLIGQSLKFQYL LMTNALPQAESLAQHLATSAPGNQGLQIDYASLLQARGLPHAAEQKLKMAEALEPSNIEL ERQQAYVAMDLQEWQQLDLLTDDVIARTPLDESTKNLGRVRDVHHFSELRITAGKGLYSD NPVSGTHDLSGDAALYGPPIADNWRLFAGTHFAQGHFDEGKGSSRSLFGGAEWRPRDLWA EVEVSNNNFHGNNKPGGRLSAKYIPNDNWQIGGNLERISRATPLRALRNGISSNRADTWL RWYQNERREYQFSIAASKFSDHNRRQEYALTGKERLWQAPALTLDLEPEISASANSLSHT DYYNPRRDLSATASFSINHLMYRHYDTLWSQQLIAGAGSYWQKNQSTGAITLLSYGQRLQ WNNVLDTGVMLNWDKRPYDGKRESNLAITFDANLRF >gi|283548478|gb|GG730299.1| GENE 1573 1702167 - 1704182 988 671 aa, chain + ## HITS:1 COG:YPO1952 KEGG:ns NR:ns ## COG: YPO1952 COG0726 # Protein_GI_number: 16122198 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Yersinia pestis # 11 671 11 672 673 729 53.0 0 MLNKSIRCSLLVIGCLIIGANAFAKVISFIPPKQRPQLEASKPWPKNHFLVLAYHDIEDD AADQRYLTVRTSALNEQISWLLHNGYNAISVQDILDAHDGYKTLPPKAFLLSFDDGYSSF YTRVWPLLQAWNVPALWAPVGSWVDTPARQNVNFGGLMTPRERFATWDMVRELSHSPLVE IGAHTWASHYGIQANPQGSLEPAAANRFYNKTTGRYETDQQFTRRIADDVRKVTAKITQV TGTPPRAWVWPYGAANGMSFAIAKKQGYKLAFTLEDGLADVRALDNIPRLLISGNPSLKA FANTVLQIQEPEPVRAMHVDLDYVYDRNTAQLTRNIDKLIQRVYDMKISHVFLQAYSDPR GDGNVTALYFPNRHLPVRADIFNFIAWQLQTRAKVKVYAWMPVLSFHLAPSLPRVQRWDP VTGHSWTATTPYVRLSPWSREVRRQVTDIYEDLARYSAFDGILFHDDAVLTDAEDVSPDA LIAWKKTGSPFPISSIAQNPAALRAWTRFKSQALIGFTQNLGQAVKNLRGPQIKTARNIF ALPVIDPAGEERYAQNFDDFLAAYDWTVPIAVPQMGVMTADESNAWLARLVNAVATRTGA MNKTIFELHFSDKEQQPRNVPPDRDLIEKMRQLRLSGVNNYGYYPDDFIKNQPDISDIRP EFSSYWYPNND >gi|283548478|gb|GG730299.1| GENE 1574 1704175 - 1705506 660 443 aa, chain + ## HITS:1 COG:YPO1953 KEGG:ns NR:ns ## COG: YPO1953 COG1215 # Protein_GI_number: 16122199 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Yersinia pestis # 1 443 1 443 444 630 69.0 1e-180 MTDRIIAFSILCLVFGLPFGVAIIFTGELILNFVFFWPLFMSVLWITGGLYFWLKLERHW SWDNNTPPPTLAGDPLISILIPCFNEEKNARDTVSAALAQRYSNIEVIAINDGSSDNTAN VLQQLGQEHPHLRVINLAENQGKAVALKAGAAAARGDLLVCIDGDALLSRDAAAYLVAPL IQYPYVGAVTGNPRIRTRSTLIGRIQVGEFSSIIGLIKRTQRIYGRVFTVSGVIAAFRRQ ALADVGYWSEDMITEDIDISWKLQLSHWDIFFEPRALCWILMPETLKGLWKQRLRWAQGG AEVFLVNLRKLVRWEHHRMWPLLLEYALSTLWAFAYVVTVMLFIVSHIVPLPENLTVDSL FPPQFTGLLLGVMCLIQFGASLYIERRYEKNVASSLFWVIWFPVVYWMIGLFTTVFAFPK VMLKRQRARARWISPDRGKGSIE >gi|283548478|gb|GG730299.1| GENE 1575 1705503 - 1705967 169 154 aa, chain + ## HITS:1 COG:no KEGG:ECL_04316 NR:ns ## KEGG: ECL_04316 # Name: pgaD # Def: biofilm PGA synthesis protein PgaD # Organism: E.cloacae # Pathway: not_defined # 1 139 1 139 142 174 74.0 1e-42 MNENTLILTERRRLPRLFDSLLTLLAWCGFLFCLYINLLMQITEQNDSVLETIIASFYTV LIYLLIAMLNGWLLIVWYHYNRRHPHTRRHGRLSSLNPDELARSFNVDPRIISEMSQYNL LTVYHDHIGHIIDLRISHQYSSLPRKPATGEKAQ >gi|283548478|gb|GG730299.1| GENE 1576 1707082 - 1707768 383 228 aa, chain + ## HITS:1 COG:no KEGG:Entcl_0627 NR:ns ## KEGG: Entcl_0627 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 11 228 14 232 232 241 52.0 2e-62 MPYEPDSSNSLHAFDFAMKTKPHMAIKALHDKLHSFGTPVTLEAGEELFFSEDKETAFIF LLYEGCISACHFNTGLHAGTGFGPTIIGLIDGYSLYYGVEKRPRHYIVAETECKGCKVPL DKFVEQCDKHDLWHDIARILAQRLMTMSAMEEELVGRDAYGSIRAVLIELWLYPEDIRSQ LNIAAFIQKRTNLSRSRIMAVLSALKEGGYITIKTGKLIDLNKLPKAF >gi|283548478|gb|GG730299.1| GENE 1577 1708228 - 1710969 2569 913 aa, chain + ## HITS:1 COG:STM0373_2 KEGG:ns NR:ns ## COG: STM0373_2 COG3468 # Protein_GI_number: 16763753 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Salmonella typhimurium LT2 # 477 913 18 467 467 437 63.0 1e-122 MKSNGKFYKTKIALACSLGLAFQASATDVSNGTWDTFTYDGTSDAAIYQGYVDWNTTDAD GNIYPVINNSVVNGVISTNYLDADTANPNSLSISNTTIHGMVTSACMTSGCTTTVQNYND PLELTVDNSTIDDSYEHFDYQNADGTTSGTIPTYALGTAITLGQESDIAIQNNSHVAGIT LGQQQQDYADSGSTDSFVDNITVTDSTVTSGSWTELDTTGFYGQSEKPSDYNGAATMTVN YDVNGDGTIDNSDQIVNMNDVALAAIDNPSSEESMKTNATFSNSTLTGDVLFVSSFNTGF APEGQDTNADGVIDSNMGYSDDSLNQDEMNLTLDNGSKWVGAAISDVQATADLYDVAANS LWPSSTYNADTGYISGNEVFQSGVFNVALDHGSEWDTRKASAVDTLTVSNGSQVNVESSS LLADSIALNNSSSMNIGDDGKVAANSINIDSNSYVDLTEETAQLYANTITVSNNAALELG TGEVDTHNMVLTSGGQLDVGSRDYVLNSNMNTGYTNGDTTDATDYGVVGLNSDGHLAVNG DVAGNYQVRIDNATGEGSVADYKGHELIRVYDDNADTTASFTAANKADLGAYQYEAQQQG DSVVLKQDGLTDYANIALSIPSANTNIWNLEQDALANRLDNGRHAQQGADTGGAWISYIG GHFNADTDTLSYDQDVNGIMVGLDKAIDGNYAKWIVGAAAGFAKGDIDQNSGHVDQDSQS ARLYASAKFDNNIFVDSSINYSHFDNDLSATMTNGNSVNGNGISSDAWGFGLKAGYDWKY DQNGYVTPYASVSGLFQDGDNYQLSNNMSVDSQSYDSMRYEAGVSTGYTFAFGDQSFTPF AKIAYVYDDSNSNSANVNGDDIDNGVEGSAVRAGLGGQFNFTKNFSAYASGDYLGGGDVD QDWSANAGVKYTW >gi|283548478|gb|GG730299.1| GENE 1578 1711039 - 1711602 306 187 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085556|ref|ZP_06353341.2| ## NR: gi|291085556|ref|ZP_06353341.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 187 7 193 193 357 100.0 2e-97 MIHFLSSSQDKFLELGMQHAIDEFSEPTPKNANNTLVFLADSRTPFDSLLSLSRHKSLAT YQRLIIISDVLNSECVKRFIPGTLPFHIIRSRAPIALLLAQIKKLLKEGAFITSGYNRGL LTNKEKSSFFAIYNAYRHPNNSDNWLLASKVKSHYKHRIMKKLSIPNNVSFSFLINSCGF NWIISFL >gi|283548478|gb|GG730299.1| GENE 1579 1711859 - 1712068 62 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYMHLRNVRNAFLGKRISVFCIHGRVFSSWVFYLYCVLYACFLFDKVFYCQIFGEMLPTA ITDVFESCA >gi|283548478|gb|GG730299.1| GENE 1580 1713106 - 1714422 1612 438 aa, chain + ## HITS:1 COG:ECs2778 KEGG:ns NR:ns ## COG: ECs2778 COG0477 # Protein_GI_number: 15832032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 436 1 436 438 745 90.0 0 MDSTLTSTGPQPDASSLNRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPT MGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGMIPSFDAI GWWAPVLLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGL VSLISSQTTDEQFLSWGWRIPFLFSIVLVLGALWMRNRMDESAEFEQQQQAPQPAKKRLP VVEALIRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNVGLLVGGLSC LTIPCFAWLADRFGRRRVYITGALVGTLSAFPFFMALEAQSIFWIVFFAIMLANIAHDMV VCVQQPMFTGLFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTFSGGDWHSVAIYLMA GCLISATTALLMRDKHHD >gi|283548478|gb|GG730299.1| GENE 1581 1714540 - 1715994 1423 484 aa, chain + ## HITS:1 COG:ECs2779 KEGG:ns NR:ns ## COG: ECs2779 COG0775 # Protein_GI_number: 15832033 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Escherichia coli O157:H7 # 1 484 1 484 484 937 93.0 0 MNNKGASLTPAQALDKLDALYEQSVNALRSAIGKYIETGTLPDVIARHNGLFVYPSLRVT WDGSATNPPKTRAYGRFTHAGCYTTTITRPSLFRPYLEEQLTLLYQDYDAHISVEPSQHE IPYPYVIDGSELTLDRSMSAGLTRHFPTTELSQIGDETADGIFHPAEFSPLSHFDARRVD FSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPYIALSCAGGIWIT AETEAPEEAISDLAWKKHQMPAWHLITADGQGITLVNIGVGPSNAKTICDHLAVLRPDVW LMIGHCGGLRESQTIGDYVLAHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKEVSG MPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESATIAAQGYRFRVPY GTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDRLRAEGDRLHSRKLRTFNE PPFR >gi|283548478|gb|GG730299.1| GENE 1582 1716010 - 1717788 1694 592 aa, chain + ## HITS:1 COG:mlr1535 KEGG:ns NR:ns ## COG: mlr1535 COG0006 # Protein_GI_number: 13471534 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Mesorhizobium loti # 7 587 1 591 597 440 42.0 1e-123 MHNSTPLSALRNLLIAQGLDGMIVPRADAHQSEDCTPHDNKLAWLTGFSGSAGLALVLRD RALIFVDGRYQVQVRNEVSLDDFEIHHLHDEPLADYLQSHVAADTRIGFEPLLMVNSQFE ALSATHCELVPLEQDPFDQIWCDRPAAPCGIIREMPLEISGESSTQKRARVVELLAQHQA DVLAITLPDNIAWLLNVRGSDLAMVPVPFSFALLHRSGELEWFVDSNKTQQLPASLLNTL TLAPQESFLARCQQLANGKRFLVDKDYAPVALRFAIEEHGGNVLWAPDPITLMKAHKNDV ELAGYRECHEQDGAAWVNFLAWLAHEVPLREAAGNPVTELEAQAKQLAFRQQQPGFIEQS FSTISASASNAAMCHYHSSEKTNTPITSQAMYLNDSGGQYQNGTTDTTRTLAFGPQDPQR RLHYTAVLKGFLSLISLQFPSGTQGHQLDAFSRRALWDLGLDFDHGTGHGVGHQLLIHEQ PHRIAKKVNPWPLVAGNIITIEPGYYLAGQYGIRIENQVEIINSRPGFCRFSTLTLVPID LNLVDLHLLSDAEKQWIDDYHQQVRETLSPRVNAEARPWLFAATAPIRVQAS >gi|283548478|gb|GG730299.1| GENE 1583 1717844 - 1719277 1521 477 aa, chain - ## HITS:1 COG:ptsG_1 KEGG:ns NR:ns ## COG: ptsG_1 COG1263 # Protein_GI_number: 16129064 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli K12 # 1 395 1 395 397 729 98.0 0 MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMP LIFAIGVALGFTNNDGVSALASVVAYGIMVKTMAVVAPLVLHLPAEEIAAKHLADTGVLG GIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVILSFIWPPIGTAIQ TFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRY MAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPI EFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIV GIGYAIVYYTIFRVLIKALDLKTPGREDATEDSKAGASGEMAPALVAAFGGKENITNLDA CITRLRVSVADVAKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNS >gi|283548478|gb|GG730299.1| GENE 1584 1719694 - 1720491 820 265 aa, chain - ## HITS:1 COG:ECs1478 KEGG:ns NR:ns ## COG: ECs1478 COG0084 # Protein_GI_number: 15830732 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli O157:H7 # 1 265 1 265 265 496 93.0 1e-140 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRSMRELVGERDNV VFSCGVHPLNQDETYDVEALRRYAAEEGVVAMGETGLDYFYTPETKGRQQESFIHHIQIG RELHKPVIVHTRDARADTLSILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIV TFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMTRDVAEYMAVVKGVAVE ELAQATTDNFARLFHIDASRLQSVR >gi|283548478|gb|GG730299.1| GENE 1585 1720502 - 1721506 702 334 aa, chain - ## HITS:1 COG:STM1201 KEGG:ns NR:ns ## COG: STM1201 COG0470 # Protein_GI_number: 16764556 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 497 81.0 1e-140 MKWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLMCQQPEGHKSCG HCRGCQLMQAGTHPDYYSLLPEKGKSTLGVDAVREVSEKLYEHSRLGGAKVVWIPEAAQL TDAAANALLKTLEEPPAQTWFFLASREPARLLATLRSRCRLHHLAPPAESYAISWLSREV TASPEALLSALRLSAGSPGAALTLLQAESWAHRTDFLAALANTLRSGDWYILLAALNHDR AAARLHWLATLFTDALKRPYGISHLTNPDALDLISSLAERLSVARIQAILGDVCHCRQQL LNVTGINRELVLTDLILRIEHYLQPGTVLPVPHL >gi|283548478|gb|GG730299.1| GENE 1586 1721503 - 1722144 669 213 aa, chain - ## HITS:1 COG:ECs1476 KEGG:ns NR:ns ## COG: ECs1476 COG0125 # Protein_GI_number: 15830730 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Escherichia coli O157:H7 # 1 213 1 213 213 366 92.0 1e-101 MGSNYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLVLDIKSV GDEIITDKAEVLMFYAARVQLVETVIKPALARGAWVIGDRHDLSTQAYQGGGRGIDQNML ATLRDAVLGDFRPDLTIYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAK DASIRTIDATQPLEAVMADIRNTITRWVKEQGA >gi|283548478|gb|GG730299.1| GENE 1587 1722134 - 1723156 1151 340 aa, chain - ## HITS:1 COG:yceG KEGG:ns NR:ns ## COG: yceG COG1559 # Protein_GI_number: 16129060 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Escherichia coli K12 # 1 340 1 340 340 610 90.0 1e-174 MKKLLLVVLLLLVVLGIAAGVGMWKVRHLADSKLLIKEETIFTLKAGTGRLALGEQLYVD KVINRPRVFQWLLRVEPDLSHFKAGTYRLTPDMTVREMLLLLESGKEAQFPLRLVEGMRL SDYLKQLRDAPYIEHTLSDDNYETVAQALKLENPQWLEGWFWPDTWMYTANTTDVALLKR AHQKMVKAVDTVWEGRADGLPYQDKNQLVTMASIIEKETAVASERDQVASVFINRLRIGM RLQTDPTVIYGMGTRYNGKLSRVDLETPTAYNTYTITGLPPGPIAMPGEASLQAAAHPAK TPYLYFVADGKGGHTFNTNLASHNRSVQDYLKVLKEKNGQ >gi|283548478|gb|GG730299.1| GENE 1588 1723159 - 1723968 391 269 aa, chain - ## HITS:1 COG:STM1198 KEGG:ns NR:ns ## COG: STM1198 COG0115 # Protein_GI_number: 16764553 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 428 75.0 1e-120 MFLINGCEQNLLAASDRATQFGDGCFTTARIIDGEVCLIAAHLKRLQDACQKLLIAFEQW SELQNEMKMLAQGHARGVLKVIISRGSGGRGYSGANCYAATRILSVSAYPAHYDCWRERG ITLALSPVRLGRNPLLAGLKHLNRLEQVLIRSHLEQTDADEALVLDSEGWVTECCAANLF WRKGHVVYTPRLDQAGVNGIMRQFCIRMLAQSPFNIVERYVGLEEVMQADEIVVCNALMP VIPVRACGDTQLSSRLLFDFLAPLCEHPN >gi|283548478|gb|GG730299.1| GENE 1589 1724105 - 1725346 1245 413 aa, chain - ## HITS:1 COG:STM1197 KEGG:ns NR:ns ## COG: STM1197 COG0304 # Protein_GI_number: 16764552 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Salmonella typhimurium LT2 # 1 413 1 413 413 727 96.0 0 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENAHRIGAAIGSGIGGLGLIEENHT ALVNGGPRKISPFFVPSTIVNMVAGHLTIMYGLQGPSISIATACTSGVHNIGHAARIIAY GDADAMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMVV LEEYEHAKARGAKIYAEVVGFGMSSDAYHMTSPPENGAGAALAMVNALRDAAIEAGQIGY VNAHGTSTPAGDKAETQAVKSVFGDAASRVMVSSTKSMTGHLLGAAGAVESIFSILALRD QAIPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKKI >gi|283548478|gb|GG730299.1| GENE 1590 1725432 - 1725668 455 78 aa, chain - ## HITS:1 COG:ECs1472 KEGG:ns NR:ns ## COG: ECs1472 COG0236 # Protein_GI_number: 15830726 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Escherichia coli O157:H7 # 1 78 1 78 78 108 100.0 2e-24 MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA EKITTVQAAIDYINGHQA >gi|283548478|gb|GG730299.1| GENE 1591 1725824 - 1726558 260 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 6 243 4 242 242 104 30 2e-20 MNFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSESGAQAISDYLGANGKGLMLNV TDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKA VMRAMMKKRHGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVA PGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIASAVAFLASDEASYITGETLHVNGG MYMV >gi|283548478|gb|GG730299.1| GENE 1592 1726571 - 1727500 1053 309 aa, chain - ## HITS:1 COG:STM1194 KEGG:ns NR:ns ## COG: STM1194 COG0331 # Protein_GI_number: 16764549 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 507 94.0 1e-143 MTQFAFVFPGQGSQTVGMLSEMAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKTW QTQPALLTASVALYRVWQQQGGKTPALMAGHSLGEYSALVCAGVIGFADAVRLVELRGKF MQEAVPEGTGGMSAIIGLDDAAIAKACEESAEGQVVSPVNFNSPGQVVIAGHKEAVERAG AACKAAGAKRALPLPVSVPSHCALMKPAAEKLAVELQKITFNAPTVPVVNNVDVKCETTA DAIRDALVRQLYSPVQWTKTVEFMASQGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEP AALSAALEQ >gi|283548478|gb|GG730299.1| GENE 1593 1727516 - 1728469 871 317 aa, chain - ## HITS:1 COG:STM1193 KEGG:ns NR:ns ## COG: STM1193 COG0332 # Protein_GI_number: 16764548 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Salmonella typhimurium LT2 # 1 317 1 317 317 594 95.0 1e-170 MYTKIIGTGSYLPEQVRTNADLEKMVETSDEWIVTRTGIRERHIAAPNETVATMGFAAAN RALEMAGIDKEEIGLIVVATTSSTHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALS VADQYVKSGAVKHALVVGSDVLARTCDPTDRGTIIIFGDGAGAVVLSASEEPGILSTHLH ADGRYGELLTLPNADRVNPDNPIHLTMAGNEVFKVAVTELAHIVDETLEANNLDRSALDW LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKAGQLIL LEAFGGGFTWGSALVRF >gi|283548478|gb|GG730299.1| GENE 1594 1728547 - 1729596 560 349 aa, chain - ## HITS:1 COG:ZplsX KEGG:ns NR:ns ## COG: ZplsX COG0416 # Protein_GI_number: 15801207 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Escherichia coli O157:H7 EDL933 # 1 346 1 346 346 611 95.0 1e-175 MGGDFGPTVTVPAALQALNSNSQLTLLLVGDPDTITPLLAKADFEQRSRLQIIPAQSVIA SDARPSQAIRASRGSSMRVALELVKEGRAQACVSAGNTGALMGLAKLLLKPLEGIERPAL VTVLPHQQKGKTVVLDLGANVDCDSTMLVQFAVMGSVLAEEVVGIANPRVALLNIGEEET KGLDSIRDASAVLKTIPSINYIGYLEANELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFL SLLKSQGEGKKRSWWLLLLKRWLQKSLTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQ RAFEVAIEQAVQAVQRQVPQRIAARLESVYPAGFELLDDGESATSRAHR >gi|283548478|gb|GG730299.1| GENE 1595 1729749 - 1729922 291 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227332625|ref|ZP_03836281.1| hypothetical protein CIT292_02120 [Citrobacter youngae ATCC 29220] # 1 57 1 57 57 116 100 4e-24 MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEQHLRHHITADGFYRGRKVIAK >gi|283548478|gb|GG730299.1| GENE 1596 1729939 - 1730460 390 173 aa, chain - ## HITS:1 COG:ECs1466 KEGG:ns NR:ns ## COG: ECs1466 COG1399 # Protein_GI_number: 15830720 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Escherichia coli O157:H7 # 1 173 1 173 173 298 92.0 3e-81 MQKVKLPLTLDPVRTAQKRLDYEGIYTSDLVERVADSVVSVDSDVECSMSFAIDNQRLAV ITGDAKVSVTLECQRCGKPFPLHVHTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL AMVEDEIILSLPVVPVHDSEHCEVSEADMVFGELPDEAQKPNPFAVLASLKRK >gi|283548478|gb|GG730299.1| GENE 1597 1730658 - 1731242 502 194 aa, chain + ## HITS:1 COG:STM1189 KEGG:ns NR:ns ## COG: STM1189 COG0424 # Protein_GI_number: 16764544 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Salmonella typhimurium LT2 # 1 193 1 193 194 350 90.0 1e-96 MPQLILASTSPWRRALLEKLAIPFECAAPEVDETPLPGEAPRHLVLRLAQKKAQSLAHRY PAHLIIGSDQICVLDGEITGKPLTEENARQQLLKASGNIVTFYTGLALYNSATGHLQTEV EPFDVHFRHLSESEIDDYLRKERPLHCAGSFKSEGLGIALFERLEGRDPNTLIGLPLIAL CQMLRREDMNPLKA >gi|283548478|gb|GG730299.1| GENE 1598 1731375 - 1732370 186 331 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 109 318 83 282 287 76 29 6e-12 MCGANLDGYLKSAPMKTETPAVKTVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGE VRVNKKRIKPEYKLEDGDIVRIPPVRVADREEEAISPNLQKVAALTDVILYEDDHILVLN KPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQ LREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVNQEGKPSETRFKVEERY AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDKQLADTGLNRLFLHAAALK FTHPGTGEVMRIEAPMDKQLKRSLEVLRSKA >gi|283548478|gb|GG730299.1| GENE 1599 1732903 - 1736154 2996 1083 aa, chain + ## HITS:1 COG:STM1185 KEGG:ns NR:ns ## COG: STM1185 COG1530 # Protein_GI_number: 16764541 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Salmonella typhimurium LT2 # 1 1083 1 1067 1067 1286 79.0 0 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY GAERHGFLPLKEIAREYFPASYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME TPHYSVLRVRKGEETPTLSYLLPKLHEEAMELPSEQEYVERKQPEQPALATFAMPDVPPA PTVQEPAVKAAAPKAAVATAATDSQPGLISRFFSALKSIFGGSEEVKPVEQPAPKAEEKT ERQQDRRKPRQNNRRDRNDRRDNRDSRGDRDNRNERAENGENRDDNRRNRRQAQQQNAEA RDNRQPSSDVADKAKSGDEPQTPRRERNRRRNDDKRQAQQEVKELNQAEQPVQDSEQEER VRQPQTRRKQRQLSQKVRYTDSATVEADVATAAVAAETVVAQSAEQSVPAAPRTELAKVD LPAVVAPEQEDNSEARDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACA SPELASGKVWIRYPVVRPQDQQVEEQREQEVHHQQTAPAAIEPQVAAAAVEQIVDTPAPV ETVQPEVVVAEPQVAVVETTHPEVIATPVEEQPQIIAESDAPVAEEIAAEAEPVVEAAAE VEAKAAAETVASEPEVVEDVAEAAPTVEEVAAPQEVQEPVAAPVVEAEIVKAEVVATSVN AEHLHSHATAPMTRAPAPEYVPEAPRHSDWQRPAFAFEGKGAAGGHSATHHATAPATRPQ SVE >gi|283548478|gb|GG730299.1| GENE 1600 1736180 - 1737094 685 304 aa, chain - ## HITS:1 COG:slr1245 KEGG:ns NR:ns ## COG: slr1245 COG0583 # Protein_GI_number: 16330422 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 1 285 7 289 302 172 32.0 6e-43 MRTFVRIVEAGSLSAAAKQMGTTQATVSRRLQSLETLLGVKLIMRTTHAMKLTDDGERGY QHAKNIIDAWLALEDGLNVKEDEPVGMLRVRAPHAFGQQQLLEPLLQFLSRYPQLSVEWM LNDKTVDFLSDNIDCAIRVGAEVDPATVSVLLAEVPRSMVASPALLEQYGELSHPEQLSA LPWIAVNTFFQHSVSLLHQPRNKPVTLTIAPRLSTDSIYVARNAALAGLGVTIVSSWMVE EDIASGRLVLLLPEWHAASLPVHLVYPWARYYPTRLRKFLALMKDVMPQLSGMKRVADAK KSRP >gi|283548478|gb|GG730299.1| GENE 1601 1737242 - 1738441 1347 399 aa, chain + ## HITS:1 COG:RSp0078 KEGG:ns NR:ns ## COG: RSp0078 COG0477 # Protein_GI_number: 17548299 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 5 393 13 396 399 219 40.0 1e-56 MNTHTALSRWVIFVLALGAGFSVAAIYYAQPLLPLMGQDLALSITGMGLVPTLTQAGYAL GILFLLPLGDRYDRRTLILLKSLSLAVLLLACSFTGQLHSLLIVSLLLGMAATMAQDIVP AAAILAPEGKQGKTVGTVMTGLLLGILLSRTVSGVVGEAFGWREMYQLAAASIAVITAIM WKVLPRFTAHSTLSYPSLMLSMAQLWQRYPALRRAALAQGFLSIAFSAFWSTLAVMLSEH YRMGSAMAGAFGIAGAAGALAAPLAGHLADKVGAAKVTQLGALLVTVSFSLMFLLPALPV QGQWLLIALSAVGFDLGLQSSLVAHQNLVYGLEPQARGRLNALLFTMVFIGMALGSILGS QVYALANWEGVVALATLSGALALVIRLTGNLSLNKTTVA >gi|283548478|gb|GG730299.1| GENE 1602 1738517 - 1739470 1178 317 aa, chain - ## HITS:1 COG:STM1184 KEGG:ns NR:ns ## COG: STM1184 COG1344 # Protein_GI_number: 16764540 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Salmonella typhimurium LT2 # 1 317 1 317 317 460 86.0 1e-129 MRISTQMMYQQNMRGITNSQAEWMKFGEQMSTGKRVINPSDDPIAASQAVVLSQAQAQNS QYTLARTFATQKVSLEENVLNQVTTAIQAAQEKIVYAGNGTLSDDDRASLATDLQGIRDQ LMNLANSTDGNGRYIFGGYKTESAPFAQADGSYNGGTTNVTQQVDASRTMVIGHTGDKIF ASLTSNAVPEPPGSTQEKNLFKMLDSAIAELNTPIAGDDVAKDKAAAAIDKTSRGLKNSL NNVLSVRAELGTQLSELSSLDSLGADRALGQTQQMSNLVDVDWNAAISSYVMQQAALQAS YKTFTDMQGMSLFQLNR >gi|283548478|gb|GG730299.1| GENE 1603 1739485 - 1741113 1409 542 aa, chain - ## HITS:1 COG:ECs1460 KEGG:ns NR:ns ## COG: ECs1460 COG1256 # Protein_GI_number: 15830714 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Escherichia coli O157:H7 # 1 542 9 547 547 724 81.0 0 MSGLSAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQREYD SFITNQLRAAQNQSSGLTTRYEQMSKIDNLLSSKTSSISTSMQDFFTSLQTLVSNAEDPA ARQALIGKADGLVNQFRTTDQYLRDQDKQVNTAIKASVDQINNYSKQIASLNDQISRLTG VGAGASPNDLLDQRDQLVSELNQIVGVEVSVQDGGTYNVTMANGYSLVQGSNARQLAAVP SSDDPSRTTVAYVDGVAGAVEIPEKLLNTGSLGGLLTFRSQELDQTRNTLGQLALAFADA FNTQHKEGFDANGDKGGNFFDIGSPAVLSNTKNQGTGSLDVKMTDSSAVQATDYKIVFDG TDWQVTRLADNTSFKATVTGGKMSFDGMEITVGAGAKPNDSFTVKPVSDAVIEMKVLVTD ESKIAMASEKNTDPAADTGASDNRNGQKLLDLQTKETVGNKTFNDAYATLVSDVGNKTAT LKTSSTTQNNVVKQLYNQQQSISGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALIN IR >gi|283548478|gb|GG730299.1| GENE 1604 1741202 - 1742152 1037 316 aa, chain - ## HITS:1 COG:STM1182_1 KEGG:ns NR:ns ## COG: STM1182_1 COG3951 # Protein_GI_number: 16764538 # Func_class: M Cell wall/membrane/envelope biogenesis; N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Rod binding protein # Organism: Salmonella typhimurium LT2 # 1 170 1 170 170 267 88.0 2e-71 MIGDSKLLTSAAWDAQALNELKAKAGQDPAANIRPVARQVEGMFVQMMLKSMREALPKDG VFSSDSTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTQGQTQPADDAPQVPMKFPLET VTSYQNQALTQLVRKAIPRATESHDEPLSGDSKDFLAQLSLPAKLASQQSGVPHHLILAQ AALESGWGQRQIRRENGEPSFNIFGVKASGSWKGPTTEITTTEYENGEAKKVKARFRVYS SYLEALSDYVGLISRNPRYAAVTAAATAEQGAQALQNAGYATDPHYARKLTSMIQQLKSM SEKVSKTYSTNIDNLF >gi|283548478|gb|GG730299.1| GENE 1605 1742152 - 1743249 1083 365 aa, chain - ## HITS:1 COG:STM1181 KEGG:ns NR:ns ## COG: STM1181 COG1706 # Protein_GI_number: 16764537 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Salmonella typhimurium LT2 # 1 365 1 365 365 533 92.0 1e-151 MFKSLVGMVLVLATAFAHADRIRDLTSVQGVRENSLIGYGLVVGLDGTGDQTTQTPFTTQ TLNNMLSQLGITVPTGTNMQLKNVAAVMVTAQFPAFGRQGQTIDVVVSSMGNAKSLRGGT LLMTPLKGVDSQVYALAQGNILVGGAGAAAGGSSVQVNQLNGGRITNGATIERELPSQFG AGNTINLQLNNEDFAMAQQITDTINRSRGFGSATALDARTIQVRVPSGNSSQVRFLADIQ NMEVNVTPQDAKVIINSRTGSVVMNREVTLDSCAVAQGNLSITVNRQANVSQPDTPFGGG QTVVTPQTQIDLRQSGGSLQSVRSSANLNNVVRALNALGATPMDLMSILQSMQSAGCLRA KLEII >gi|283548478|gb|GG730299.1| GENE 1606 1743262 - 1743960 601 232 aa, chain - ## HITS:1 COG:STM1180 KEGG:ns NR:ns ## COG: STM1180 COG2063 # Protein_GI_number: 16764536 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Salmonella typhimurium LT2 # 1 232 1 232 232 402 93.0 1e-112 MRKYALHPYPILALLVVSLTGCAWIPATPLVQGATSAQPIPGPTPVANGSIFQSAQPINY GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNE RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF SGVVNPRTISGSNSVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM >gi|283548478|gb|GG730299.1| GENE 1607 1744018 - 1744800 1013 260 aa, chain - ## HITS:1 COG:STM1179 KEGG:ns NR:ns ## COG: STM1179 COG4786 # Protein_GI_number: 16764535 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Salmonella typhimurium LT2 # 1 260 1 260 260 434 99.0 1e-121 MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGIVSVTQQGQAAPVQVGQLNLTTFMN DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY EINSKAVSTTDQMLQKLTQL >gi|283548478|gb|GG730299.1| GENE 1608 1744814 - 1745569 740 251 aa, chain - ## HITS:1 COG:flgF KEGG:ns NR:ns ## COG: flgF COG4787 # Protein_GI_number: 16129040 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli K12 # 1 251 1 251 251 396 93.0 1e-110 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVVAS TPGADMTPGQMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGAIQVSPTGELTIQGHPV IGEAGPIAVPEGSEVTIAADGTISALNPGDPANTVAPVGRLKLVKATGSEVQRGDDGMFR LSAAAQATRGPTLQADPSIRVMSGVLEGSNVKPVAAMSDMIANARRFEMQMKIISSVDDN AGRANQLLSMS >gi|283548478|gb|GG730299.1| GENE 1609 1745590 - 1746825 1489 411 aa, chain - ## HITS:1 COG:STM1177 KEGG:ns NR:ns ## COG: STM1177 COG1749 # Protein_GI_number: 16764533 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Salmonella typhimurium LT2 # 1 411 1 403 403 556 85.0 1e-158 MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGAASFADMFAGSKVGLGVKVAGITQD FTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRNIVNMQGLQLTGYP ATGTPPTVQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDKVPAKTPFDPSDADTYNK KGTVTVFDSQGNAHDMNIFYVKNAQSNTWEVHTQDASTGDPAQSAGFMRFNENGVFLGIS ATATGAPAGTDIQITTGQINGADAADFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSY QINNDGTVVGNYSNEQKQVLGQIVLANFANNEGLASQGDNVWAATQSSGVALLGTAGEGN FGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR >gi|283548478|gb|GG730299.1| GENE 1610 1746852 - 1747550 891 232 aa, chain - ## HITS:1 COG:STM1176 KEGG:ns NR:ns ## COG: STM1176 COG1843 # Protein_GI_number: 16764532 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Salmonella typhimurium LT2 # 1 232 1 232 232 309 84.0 3e-84 MSVAVTMNDPSNAGVKAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTT QLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTILTGKGTEEGAKT TTTPFGVELQQPADKVTATITDKDGKVIRSIDIGGLKAGVHTFTWDGTMTDGTDAPGGSY NVSIAASNGGTQLVAQPLQFALVQGVIRSNGGNTLDLGTYGTTTLDEVRQII >gi|283548478|gb|GG730299.1| GENE 1611 1747562 - 1747966 451 134 aa, chain - ## HITS:1 COG:ECs1452 KEGG:ns NR:ns ## COG: ECs1452 COG1558 # Protein_GI_number: 15830706 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Escherichia coli O157:H7 # 1 134 1 134 134 217 96.0 5e-57 MALLNIFDIAGSALTAQSKRLNVAASNMANADSVTGPDGQPYRAKQVVFQVDAAPGAATG GVKVADVIESQAPDKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANVEVLN TVKSLMLKTLTLGQ >gi|283548478|gb|GG730299.1| GENE 1612 1747970 - 1748386 346 138 aa, chain - ## HITS:1 COG:STM1174 KEGG:ns NR:ns ## COG: STM1174 COG1815 # Protein_GI_number: 16764530 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Salmonella typhimurium LT2 # 1 138 1 138 138 231 89.0 3e-61 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDLDFASELKKVMVRGREQT GGVSLTLTSAQHIPAQTVSTPSTELLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQMGL TALGGQIKGMMNVLQGGN >gi|283548478|gb|GG730299.1| GENE 1613 1748544 - 1749203 550 219 aa, chain + ## HITS:1 COG:STM1173 KEGG:ns NR:ns ## COG: STM1173 COG1261 # Protein_GI_number: 16764529 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 347 83.0 7e-96 MQTFKRGIVVAALLFSPMTLAQDLNSQLTAWFSQRLAGFSDEVVVTIRTSPNLLPSCEQP ALSVSGNAKLWGNVNVLARCANEKRYLQVNVQATGNYVVAAAPVARGSALTPASVTLKRG RLDQLPPRAVLDLNQVQDAVSLRDLVPGQPIQLSMLRQAWRIKAGQRVLVIANGEGFRVN AEGKALNNAAVAQNARVRMISGQVVSGVVDSDGNILINL >gi|283548478|gb|GG730299.1| GENE 1614 1749296 - 1749589 330 97 aa, chain + ## HITS:1 COG:STM1172 KEGG:ns NR:ns ## COG: STM1172 COG2747 # Protein_GI_number: 16764528 # Func_class: K Transcription; N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Negative regulator of flagellin synthesis (anti-sigma28 factor) # Organism: Salmonella typhimurium LT2 # 1 97 1 97 97 117 89.0 4e-27 MSIDRTSPLKPVSTVQPRETSDTPVQKARKEKTTATNSTSVMLSDAQAKLMQPGTNDINM ERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK >gi|283548478|gb|GG730299.1| GENE 1615 1749593 - 1750015 513 140 aa, chain + ## HITS:1 COG:STM1171 KEGG:ns NR:ns ## COG: STM1171 COG3418 # Protein_GI_number: 16764527 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar biosynthesis/type III secretory pathway chaperone # Organism: Salmonella typhimurium LT2 # 1 140 1 140 140 195 88.0 2e-50 MTRLSEILDQMTTVLNDLKTVMDAEQQQLSAGYINGSQLQRITEEKSSLLATLDYLEQQR RQEHDATRSANDEIAERWQTITQKTQHLRDLNQHNGWLLEGQIERNQQAIHVLKPHQEPA LYGANGQTSTAHRGGKKFSI >gi|283548478|gb|GG730299.1| GENE 1616 1750093 - 1751628 1021 511 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145628098|ref|ZP_01783899.1| 30S ribosomal protein S20 [Haemophilus influenzae 22.1-21] # 3 502 5 516 524 397 40 1e-109 MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAF SQAFVPILAEYKSKQGEDATRVFVAYVSGLLTLALAVVTVAGMLAAPWVILVTAPGFADT ADKFALTTQLLRITFPYILLISLASLVGAILNTWNRFSIPAFAPTFLNISMIGFALFAAP YFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRVNFRDAGAMRVVKQMGPAILGV SVSQISLIINTIFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFSSGNH DEYCRLMDWGLRLCFLLALPSAVALGILAKPLTVSLFQYGKFTAFDAAMTQRALVAYSVG LIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLIMTQLMNLAFIGPLKHAGLSLSIGLAACL NASLLYWQLRKQKIFTPQPGWAWFLARLVISVLVMSAALVGMLYIMPDWSQGTMLWRLLR LMAVVVAGIAAYFAALAVLGFKVKEFVRRTA >gi|283548478|gb|GG730299.1| GENE 1617 1751870 - 1752793 776 307 aa, chain - ## HITS:1 COG:STM1169 KEGG:ns NR:ns ## COG: STM1169 COG0673 # Protein_GI_number: 16764525 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Salmonella typhimurium LT2 # 1 307 1 307 307 526 82.0 1e-149 MNKLRIGVVGLGGIAQKAWLPVLGSSADWTLQGAFSPSREKALRVCDTWRIPYVDSLVNL AKTCDAVFVHSSTATHYAVVSELLHAGVHVCVDKPLAENLREAEQLVELAARKKLTLMVG FNRRFAPLYQDLKAQLGNAASVRIDKHRTDSVGPHDLRFTLLDDYLHVVDTALWLAGGNP QLNSGTLLTNDAGAMLYAEHHFSVDQLQITTSMHRRAGSQRESVQAVTDGGLIDVTDMRE WREERGHGVVHKPIAGWQTTLEQRGFAGCARHFIECVQNQTVPQTAGEQALLAQRVVEKL WREAMAE >gi|283548478|gb|GG730299.1| GENE 1618 1752795 - 1753442 686 215 aa, chain - ## HITS:1 COG:STM1168 KEGG:ns NR:ns ## COG: STM1168 COG3132 # Protein_GI_number: 16764524 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 215 1 215 215 357 90.0 7e-99 MKYELTATEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNREPVMNLSEAEVQDQLD NLVKRHFLRTVSGFGNRVTKYEQRFCNSEFGNLKLSAAEVALVTTLLLRGAQTPGELRSR ASRMYEFSDMAEVESTLEKLATREDGPYVIRLAREPGKRESRYMHLFCGDVDEPIATADE LPVASGDLQARVEALETEVAELKQRLDSLLAHLGD >gi|283548478|gb|GG730299.1| GENE 1619 1753475 - 1754059 1009 194 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16764523|ref|NP_460138.1| ribosomal-protein-S5-alanine N-acetyltransferase [Salmonella typhimurium LT2] # 1 194 1 194 194 393 94 1e-107 MFGYRSNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPIRDESHCYPSGWQ ARLSMISEFHKQGTAYYFALLDPEEKEIIGVANFSNVVRGSFHACYLGYSIAQKWQGQGL MYEALTSAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDH VLTALTTSEWTPGR >gi|283548478|gb|GG730299.1| GENE 1620 1754376 - 1755527 1386 383 aa, chain + ## HITS:1 COG:STM1166 KEGG:ns NR:ns ## COG: STM1166 COG0477 # Protein_GI_number: 16764522 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 383 20 402 402 632 93.0 0 MLVVLGFFVVFPLISIRFVDQMGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI VTGMLMRAAGFATMGIAHEPWLLWFSCFLSGLGGTLFDPPRSALVVKLIRPEKRGRFFSI LMMQDSAGAVVGALLGSWLLQYDFRLVCATGAILFVLCAAFNAWLLPAWKLSTVKIPVRE GMSHVMHDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTL LYPIARWSEKRFRLEHRLMAGLLLMSLSMMPIGLVGNLQQLFTLICTFYIGSIIAEPARE TLSASLANARARGSYMGFSRLGLAIGGAIGYVGGGWLFDMGKALAQPELPWMMLGIIGFI TFLALGWQFSLKRPTRGMLEPDA >gi|283548478|gb|GG730299.1| GENE 1621 1755642 - 1756202 761 186 aa, chain + ## HITS:1 COG:no KEGG:CKO_02000 NR:ns ## KEGG: CKO_02000 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 186 42 227 227 332 91.0 4e-90 MKKLFFAAALIVGGLLVGCNQLTQYTVSEQEINQALAKHNNFSKDIGLPGVAEAHIVLSN LASQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFNKEKGAIYLQEMEVVD ATVTPEKMQSVLQTLMPYLNQSLRNYFNQQPAYILRDDSSQGEALAKKLAKGIEVKPGEI IIPFTD >gi|283548478|gb|GG730299.1| GENE 1622 1756308 - 1757354 956 348 aa, chain + ## HITS:1 COG:pyrC KEGG:ns NR:ns ## COG: pyrC COG0418 # Protein_GI_number: 16129025 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase # Organism: Escherichia coli K12 # 1 347 1 347 348 676 93.0 0 MTAPSQVLKIRRPDDWHLHFRDGDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVDAAIAYR QRILDAVPAGHDFTPLMTCYLTDTLDPNELERGFNEGVFTAAKLYPANATTNSTHGVTSI DAIMPVLERMEKLGMPLLVHGEVTHADIDIFDREARFIETVMEPLRQRLTALKVVFEHIT TKDAAEYVRDGNELLAATITPQHLMFNRNHMLVGGIRPHLYCLPILKRNVHQQALRELVA SGFSRAFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAAVFEEMNALAHFEAFCSLNG PGFYGLPVNETFIELERMEHQVPESIALEDDTLVPFLGGETVRWSVKN >gi|283548478|gb|GG730299.1| GENE 1623 1757420 - 1757665 331 81 aa, chain + ## HITS:1 COG:no KEGG:CKO_02002 NR:ns ## KEGG: CKO_02002 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 81 1 81 81 145 93.0 4e-34 MRIEVTIAKTSPLPAGAIDALAGELSRRIHHHFPDNEGNVTVRYAGANNLSVIGATKEDK ERISEILQETWESADDWFINE >gi|283548478|gb|GG730299.1| GENE 1624 1758004 - 1758261 194 85 aa, chain + ## HITS:1 COG:no KEGG:CKO_02005 NR:ns ## KEGG: CKO_02005 # Name: bssS # Def: biofilm formation regulatory protein BssS # Organism: C.koseri # Pathway: not_defined # 2 85 1 84 84 163 97.0 2e-39 MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRPDPDGTEVGQTLWLTTDVARQ FISILEAGIAKIESGDYQVNEYQRH >gi|283548478|gb|GG730299.1| GENE 1625 1758376 - 1759494 940 372 aa, chain + ## HITS:1 COG:solA KEGG:ns NR:ns ## COG: solA COG0665 # Protein_GI_number: 16129022 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1 371 1 372 372 688 86.0 0 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMIDAHMPPHQQGSHHGDTRLIRHAYGEGEKY VPLVLRAQKLWDELSTQNEEPIFVRSGVINLGPADSAFLATAAQSAKQWQLNVEHLDAAA IMARWPEIRVPENYIGLFEAESGFLRSELAIKTWIRLAEEAGCAQLFKCPVSAIRHSDDG VTVETADGDYHAKKALVSAGTWVQTLVPELPIRPVRKVFAWYQADGRYSVKNNFPAFTGE LPNGDRYYGFPAENDELKIGKHNGGQEIHSAEERKPFAAVASDGSEAFPFLRTVLPGVGC CLHGASCTYDNSPDEDFIIDTLPEHDNTLIVSGLSGHGFKFASVLGEIAADFAQDKPSDF DLTPFRLSRFKR >gi|283548478|gb|GG730299.1| GENE 1626 1759547 - 1759660 122 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRRIFHYLVNNIREHLMLYIILWSLLAIMDVIYIMFF >gi|283548478|gb|GG730299.1| GENE 1627 1759924 - 1760490 383 188 aa, chain + ## HITS:1 COG:ECs1435 KEGG:ns NR:ns ## COG: ECs1435 COG3038 # Protein_GI_number: 15830689 # Func_class: C Energy production and conversion # Function: Cytochrome B561 # Organism: Escherichia coli O157:H7 # 1 187 1 187 188 287 80.0 7e-78 MQFTNTPQRYGVVSAALHWLMAIAVYGMFALGLWMVTLSYYDGWYHQAPELHKSIGILLM MGLVVRVVWRLFSPPPAALTSYSRLTRIAAAMGHLTLYALLFSIVISGYLISTADGKAIS VFGWFDIPATLANAGAQADLAGSLHLWLAWTVVVLSLLHGLMALKHHFIDNDDTLNRMLG KSSSDNGA >gi|283548478|gb|GG730299.1| GENE 1628 1760492 - 1761067 731 191 aa, chain + ## HITS:1 COG:STM1157 KEGG:ns NR:ns ## COG: STM1157 COG2353 # Protein_GI_number: 16764513 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 191 1 191 191 346 93.0 2e-95 MKKNLLGLTLASLLFTTGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFT FDEKNPAADKVNVTINTNSVDTNHAERDKHLRSAEFLNVAKFPQATFSSTSVKKEGNDLD ITGNLTLNGVTKPVTLDAKLIGQGGDPWGGTRAGFEAQGKIKLKDFNITTDLGPASQEVD LIISVEGVQQK >gi|283548478|gb|GG730299.1| GENE 1629 1761115 - 1762167 811 350 aa, chain - ## HITS:1 COG:ECs1433 KEGG:ns NR:ns ## COG: ECs1433 COG1054 # Protein_GI_number: 15830687 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Escherichia coli O157:H7 # 1 350 1 350 350 676 90.0 0 MPVLHNRISNDALKAKMLAETEPRTTISFYKYFTIADPQHTRDALYQMFTALNVFGRVYL AHEGINAQISVPQSNVAAFRQQLYAFDPALDGLRLNIALDDDGKSFWVLRMKVRERIVAD GIDDPDFNASDVGDYLKAAEVNAMLDDPDAVFIDMRNHYEYEVGHFENALEIPADTFRDQ LPKAVEMMQEHKDKKIVMYCTGGIRCEKASAWMKHNGFSKVWHIEGGIIEYARKAREQGL PVRFIGKNFVFDERMGERISEDVIAHCHQCGTACDSHTNCKNDGCHLLFIQCPACAQKYN GCCSELCREESELPEEEQRRRRAGRENGNKIFNKSRGRLNTKLGIPDPAQ >gi|283548478|gb|GG730299.1| GENE 1630 1762387 - 1763307 818 306 aa, chain + ## HITS:1 COG:ECs1432 KEGG:ns NR:ns ## COG: ECs1432 COG1560 # Protein_GI_number: 15830686 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 579 89.0 1e-165 MTNLPKFSAALLHPRYWLTWLGIGILWLIVQLPYPILYKLGCALGRLALRLMKRRAKIVS RNLELCFPQMSEQERQQMVVKNFESVGMGVMETGMAWFWSDKRISRWTEVIGMEHVRDVQ AQKRGILLVGLHFLTLELGARQFGLQQPGIGVYRPNDNPLLDWLQTWGRMRSNKSMLDRK DLKGMIKALKKGEVVWYAPDHDYGPRASVFVPLFAVEQAATTSGTWMLSRMSNACLVPFV PRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKIVEQCIMMAPEQYMWLHRRFKTRPE GAPSLY >gi|283548478|gb|GG730299.1| GENE 1631 1763463 - 1764683 1172 406 aa, chain + ## HITS:1 COG:yceE KEGG:ns NR:ns ## COG: yceE COG0477 # Protein_GI_number: 16129016 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 405 1 407 408 647 90.0 0 MSPSDAPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVESLGVTGHSALNMWSGLVFSI TFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMLLMGLAQNIWQFLVLRALLGLLGG FIPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADQYGLRPVFFITASVL LVCFILTLFFIRENFQPVSKKEMLHIREVVASLKKPKLVLSLFVTTLIIQVATGSIAPIL TLYVRELAGNVSNIAFISGMIASVPGVAALISAPRLGKLGDRIGPEKILIVALIISVLLL IPMSFVQTPWQLGVLRFLLGAADGALLPAVQTLLVYNSTNQIAGRIFSYNQSFRDIGNVT GPLMGAAISANYGFRAVFCVTAGVVLFNAIYSWNSLRRRRSAELAG >gi|283548478|gb|GG730299.1| GENE 1632 1764748 - 1765605 282 285 aa, chain - ## HITS:1 COG:ZycdT_2 KEGG:ns NR:ns ## COG: ZycdT_2 COG2199 # Protein_GI_number: 15801016 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli O157:H7 EDL933 # 94 280 1 190 202 160 45.0 2e-39 MLAIAVLAHSLASYNPGMTLEITSLKPDNVTVHWHIGYIYSLIVAWGLVLLYLVIKTKTH NILWKSIGLLCCSGILTNVLLLSLDEYSMYIWYISRGIEVISTLCIISILMYNTFIILKK ETDSAIKDAMTKIYNRKLFYRTLKASLTKGAVCVMVLDIDKFKRINDTYGHQEGDRVIIS IVDIINNSIRDTDIFARIGGEEFAILLKCKDKDEAIVVAERIRRNVENGTTLPNAYDLKE KMTISIGVYCSNATDESADKVVSYADAALYDAKNSGRNKVCYYSH >gi|283548478|gb|GG730299.1| GENE 1633 1766756 - 1767148 511 130 aa, chain + ## HITS:1 COG:no KEGG:SARI_01845 NR:ns ## KEGG: SARI_01845 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 6 130 1 124 124 163 88.0 3e-39 MAKNDMYFYATLEEAIDAAREVFLADNPDLDPDEASVQQLSVQKYVLQDGDIMWQAEFFA DEDDVDGECLPMLSGEAAQSVFDGNYDEIEIRQEWQEENTLHEWDEGEFQLEPPLDTEEG QTAADEWDER >gi|283548478|gb|GG730299.1| GENE 1634 1767149 - 1767349 188 66 aa, chain - ## HITS:1 COG:ECs1428 KEGG:ns NR:ns ## COG: ECs1428 COG5645 # Protein_GI_number: 15830682 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 3 66 12 75 75 130 95.0 6e-31 MCFLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYVTIFDLPFSLVFDTLLLPLDI HHGPYE >gi|283548478|gb|GG730299.1| GENE 1635 1767451 - 1769949 2683 832 aa, chain - ## HITS:1 COG:STM1151 KEGG:ns NR:ns ## COG: STM1151 COG2943 # Protein_GI_number: 16764507 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane glycosyltransferase # Organism: Salmonella typhimurium LT2 # 3 832 13 842 847 1602 95.0 0 MPLSDIEKAALPKTDIRAVHQALDAEHRTYSREDDSPQGSVKARLQQAWPDSLAKEQLIK DDEGRDQLQAMPKATRTSMFPDPWRTNPVGRFWDRLRGRDVTPRYLSRLTKEEQESEQKW RTVGTIRRYTLLILTLAQTIVATWYMKTILPYQGWAFINPVDMMGQDLWVSFMQLLPYML QTGILILFAVLFCWVSAGFWTALMGFLQLLIGRDKYSISASTVGDEPLNPEHRTALIMPI CNEDVDRVFAGLRATWESVKATGNAEHFDVYILSDSYNPDICVAEQKAWMELIAEVQGEG QIFYRRRRRRVKRKSGNIDDFCRRWGNQYSYMVVLDADSVMSGDCLSGLVRLMEANPNAG IIQSSPKASGMDTLYARCQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHC ALAPLPGEGSFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRW CHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFL QPRQLFPVWPQWRPELAIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFIRVTLSLLLE VLFSVLLAPVRMLFHTVFVVSAFLGWEVVWNSPQRDDDSTPWGEAFMRHGSQLLLGLVWA VGMAWLDLRFLFWLAPIVFSLILSPFVSVISSRSTVGLRTKRWKLFLIPEEYSPPQVLVD TDTYLVMNRNRTLDDGFMHAVFNPSFNALATAMATARHRVSNVLEIARDRHVEQALNETP EKLNRDRRLVLLSDPVTMARLHYRVWNSPDKYSSWVNYYQGLTLNPLALRKK >gi|283548478|gb|GG730299.1| GENE 1636 1769972 - 1771507 1495 511 aa, chain - ## HITS:1 COG:STM1150 KEGG:ns NR:ns ## COG: STM1150 COG3131 # Protein_GI_number: 16764506 # Func_class: P Inorganic ion transport and metabolism # Function: Periplasmic glucans biosynthesis protein # Organism: Salmonella typhimurium LT2 # 1 511 1 511 511 999 95.0 0 MMKMRWLGAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQ QIQFNRDKAYWSNLKTPFKLEFYHQGMYFDTPVKINEVTATAVKRIKYSPDYFNFGDVQH DKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVLGAGQVYGLSARGLAIDTALP SGEEFPRFREFWVERPKPTDKRLTIYALLDSPRATGAYRFVIIPGRDTVVDVQSKVYLRD KVGKLGVAPLTSMFLYGPNQPSPTTNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVS SFAMENPQGFGLLQRGRQFSRFEDIDDRYDLRPSAWITPKGDWGKGKIELVEIPTNDETN DNIVAYWTPDQLPEAGKEMNFKYTLTFTRDEDKLHAPENAWVQQTRRSTGDVKQSNLIRQ PDGTIAFVVDFTGADMKKLPQDTPVTAQTSIGDNGEIVESSVRYNPVTKGWRLMLRVKVK DVKKTTEMRAALVNADQTLSETWSYQLPANE >gi|283548478|gb|GG730299.1| GENE 1637 1771778 - 1772938 813 386 aa, chain + ## HITS:1 COG:no KEGG:CKO_02020 NR:ns ## KEGG: CKO_02020 # Name: mdoC # Def: glucans biosynthesis protein # Organism: C.koseri # Pathway: not_defined # 1 385 1 385 386 595 85.0 1e-168 MSSVSPPREYFLDSIRAWLMLLGIPFHISLIYSTHTWHVNSAEPSWWLTLFNDFIHAFRM QVFFVISGYFSYMLFLRYPLKRWWKVRVERVGIPMLTAIPLLTLPQFIMLQFVKGKADSW HTLSGYDKYNTLAWELISHLWFLLVLVILTTLSIWVFTRMKNRLTRRESTSAAPVSMTRL TLIFILLGVGYAAVRRTIFILYPSILSDGMFNFIVMQTLFYLPFFLLGALAFINPDLKAL FTRSSRGCTIGAALAFVAYLVNQRYGNGDAWMYETEYVITMVMGLWMVNVVFSLGHRLLN FQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHISSNLLGFFCGLLFVVGIAVILYEIH LRIPVLKFLFSGKPPVKQDKNKAVAG >gi|283548478|gb|GG730299.1| GENE 1638 1772959 - 1774380 1118 473 aa, chain - ## HITS:1 COG:STM1148 KEGG:ns NR:ns ## COG: STM1148 COG1502 # Protein_GI_number: 16764504 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Salmonella typhimurium LT2 # 2 473 23 494 494 853 88.0 0 MTRLERAITPLCAKHPGECGILALDDSLDAFAARYRLTEMAERTLDVQYYIWENDMSGLL LFSVLLAAAKRGVKVRLLLDDNNTPGLDDTLRLLDTHPNIEVRLFNPFSFRILRALGYLT DFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEQPLFSDLDVMAIGPVVKDVADDF ERYWHCRSVSTLQNVLEMAESNSSQRIELPESWYNDDITRRYLHKLETSQFMTSLDRQSL PLIWAKTRLLSDDPVKGEGKAPRHSLLPQRLFDVMGSPGERIDIISAYFVPTRAGVAQLL RLVRKGVKIAILTNSLAANDVAIVHAGYARWRKKLLRYGVELYELKPTRERVSVVHDRGL TGNSGSSLHAKTFSIDGRKVFIGSLNFDPRSTLLNTEMGFVIESEVLAELIHKRFMQSQR DMAWQLRLDRWGRINWVDRLSGGEQVLKKEPATGFWKRVLVKLASVLPIEWLL >gi|283548478|gb|GG730299.1| GENE 1639 1774382 - 1774924 169 180 aa, chain - ## HITS:1 COG:ECs1423 KEGG:ns NR:ns ## COG: ECs1423 COG2110 # Protein_GI_number: 15830677 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Escherichia coli O157:H7 # 1 177 1 177 177 270 75.0 2e-72 MQSRVHVVHGDITTIAVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVIQQQGEC PPGHAVITLAGALPAKAVIHTVGPVWQGGGHHEAERLEEAYLNTLQLALANGYQSIAFPA ISTGAYGYPRAAAAEIAVNTVLRFITRRALPDQIYFVCFDEENAQLYKRLLTRQGDDNTD >gi|283548478|gb|GG730299.1| GENE 1640 1775025 - 1775345 193 106 aa, chain - ## HITS:1 COG:no KEGG:CKO_02023 NR:ns ## KEGG: CKO_02023 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 8 106 9 107 107 102 54.0 5e-21 MCTVVNRIFSASLCTLSLFTLPVMAQQITPGGVIHFRGAIVEAPCDVSARQQQIELSCMR NGSTHNSLYNHQQVTTAPQDVQQIAIVKMHYLNEQKNMAILNIEYK >gi|283548478|gb|GG730299.1| GENE 1641 1775497 - 1775829 251 110 aa, chain - ## HITS:1 COG:no KEGG:SARI_01853 NR:ns ## KEGG: SARI_01853 # Name: csgC # Def: putative autoagglutination protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 106 33 138 140 144 74.0 9e-34 MHTLLLIAALANQITFNTTQQGDMYTVIPQVTLTQPCVCEIQVLAVRQGKGGQSQSQQKT SLSVPANRPIELTKLSFNISAEDSVKIIVTVSDGQSLHLSQQWPDSTHSP >gi|283548478|gb|GG730299.1| GENE 1642 1775891 - 1776340 344 149 aa, chain - ## HITS:1 COG:no KEGG:SARI_01854 NR:ns ## KEGG: SARI_01854 # Name: not_defined # Def: cryptic curlin major subunit # Organism: S.enterica_arizonae # Pathway: not_defined # 1 149 1 144 144 168 75.0 6e-41 MKLLKVAAFAAIVVSGSALAGVVPQWGGNHHGGGSNYGPDSSLSIYQYGSNNAANALQSD ARKSDVTITQHGRGNGAVVGQGADDSTISLKQTGFQNNATIDQWNAKNADISVTQFGGRN GALVNQTASDSNVLIQQVGFGNNATANQH >gi|283548478|gb|GG730299.1| GENE 1643 1776381 - 1776863 235 160 aa, chain - ## HITS:1 COG:no KEGG:CKO_02026 NR:ns ## KEGG: CKO_02026 # Name: not_defined # Def: curlin minor subunit # Organism: C.koseri # Pathway: not_defined # 1 160 1 160 160 220 86.0 2e-56 MYDQVQGDNMKNKLLFMMFTILGVPGIASATSYDLANSEYNFAVNELSKSSFNQAAIIGQ VGTANSANTRQGGSKLLSVISQEGSGNRAKTDQTGSYNFAYIDQVGSSNDASIKQGSYGN TAVIIQKGSGNKANITQYGTQKTAVVVQRQSQMAIRVTQR >gi|283548478|gb|GG730299.1| GENE 1644 1777597 - 1778247 446 216 aa, chain + ## HITS:1 COG:STM1142 KEGG:ns NR:ns ## COG: STM1142 COG2771 # Protein_GI_number: 16764498 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 216 1 216 216 397 94.0 1e-111 MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLALTGKLHNIQRSLDDISSGCIILMDM MEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYRDIENWPHINGVFYATEDEQRVVSG LQGVLRGECYFSQKLASYLITHSGNYRYNSTESAILTHREKEILNKLRIGASNIEIARSL FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR >gi|283548478|gb|GG730299.1| GENE 1645 1778252 - 1778644 96 130 aa, chain + ## HITS:1 COG:no KEGG:CKO_02030 NR:ns ## KEGG: CKO_02030 # Name: not_defined # Def: curli assembly protein CsgE # Organism: C.koseri # Pathway: not_defined # 1 130 1 131 131 231 92.0 8e-60 MKRYLTWIVAANLLLAAGNLHAAVEVEVPGLLTDHTVSSIGHDFYREFSDKWESEYTGNL TINERPSARWGSWITITVNQDVIFQTFLFPTKRDFDKIVVFALAETEEALNRRQIDQTLL STSDLARDEF >gi|283548478|gb|GG730299.1| GENE 1646 1778700 - 1779083 282 127 aa, chain + ## HITS:1 COG:no KEGG:ROD_10961 NR:ns ## KEGG: ROD_10961 # Name: csgF # Def: curli production assembly/transport component # Organism: C.rodentium # Pathway: not_defined # 1 127 11 138 138 194 93.0 8e-49 MLISPLSWAGNMTFQFRNPNFGGNPNNGSFLLNSAQAQNSYKDPSAGDYGIETPSALDNF TQAIQSQILGGLLTNINTGKPGRMVTSDFIVDIANRDGQLQLNVTDRKTGRTSTIEVSGL QNQSTDF >gi|283548478|gb|GG730299.1| GENE 1647 1779109 - 1779942 681 277 aa, chain + ## HITS:1 COG:ECs1414 KEGG:ns NR:ns ## COG: ECs1414 COG1462 # Protein_GI_number: 15830668 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in formation of curli polymers # Organism: Escherichia coli O157:H7 # 1 277 1 277 277 528 94.0 1e-150 MQRLLIMVAVILLSGCLTAPPKEAAKPTLMPRAQSYKDLTHLPMPTGKIFVSVYNIQDET GQFKPYPASNFSTAVPQSATAMLVTALKDSRWFVPLERQGLQNLLNERKIIRAAQENGTV AINNRIPLQSLTAANVMVEGSIIGYESNVKSGGVGARYFGIGADTQYQLDQIAVNLRVVN VSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGEIGYTSNEPVMLCLMSAIETGVI FLINDGIDRGLWDLQDKKQVDNEILVKYRHMSVPPES >gi|283548478|gb|GG730299.1| GENE 1648 1779987 - 1780469 564 160 aa, chain - ## HITS:1 COG:no KEGG:SG1984 NR:ns ## KEGG: SG1984 # Name: ycdZ # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 160 17 176 176 237 86.0 1e-61 MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQGGLKGLWISACTLLSG VVWALVIINGSALAPHMDIVGYVMTGIVAFLMCIQAKQWLLSFVPGTFIGACATFAGQGN WQLVVPSLALGLVFGYAMKNSGLWLASRRENRLSSTLTSK >gi|283548478|gb|GG730299.1| GENE 1649 1780571 - 1781125 701 184 aa, chain - ## HITS:1 COG:ycdY KEGG:ns NR:ns ## COG: ycdY COG3381 # Protein_GI_number: 16128998 # Func_class: R General function prediction only # Function: Uncharacterized component of anaerobic dehydrogenases # Organism: Escherichia coli K12 # 1 184 1 184 184 322 88.0 4e-88 MNEFSILCRVLGSLFYRQPQDPLLVPLFTLISEGKLSASWPLEQDELLARLQKSCDMPQL AADYNALFVGDECAVPPYRSAWVEGAKESDVRAFLSARGMPLADTPADHIGTLLLAASWL EDQSAEDESEALETLFVDYLLPWCGTFLGKVEAHANTPFWRTMAPLTRDAIGAMWDELQE DADE >gi|283548478|gb|GG730299.1| GENE 1650 1781149 - 1781886 688 245 aa, chain - ## HITS:1 COG:STM1136 KEGG:ns NR:ns ## COG: STM1136 COG1387 # Protein_GI_number: 16764492 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 440 90.0 1e-124 MYPVDLHMHTVASTHAYSTLSDYIAEARRKGIKLFAITDHGPDMADAPHHWHFINMRIWP RVVDGVGILRGIEANIKNIEGEIDCSGPMFTSLDLIIAGFHEPVFAPHDKDTNTQAMIAT MASGNVHIISHPGNPKYPVDITAIAQAAAKYQVALEINNSSFLHSRKGSEDNCRAVAAAV RDAGGWVALGSDSHTAFTLGEFGECRKILDDVNFPEERILNVTPKRLLAFLESRGMEPIA EFAEL >gi|283548478|gb|GG730299.1| GENE 1651 1782098 - 1783036 812 312 aa, chain - ## HITS:1 COG:STM1135 KEGG:ns NR:ns ## COG: STM1135 COG0111 # Protein_GI_number: 16764491 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 312 1 312 312 542 83.0 1e-154 MDIIFYHPTFDTTWWINALAKAIPDANVREWKAGDNAHADYALVWHPPVEMLAGRKLKAV FALGAGVDSILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQAL KNQAKWQPLQEYTRDEFTIGIMGAGVLGAKVAESLQAWGFPLRCWSRTRKSWSGVESFAG TGELGAFLSQTRVLINLLPNTAETVGIINAGLLSQLQDGAYVLNLARGVHLNEDDLLASL DSGKVKGAMLDVYSREPLPETSPLWKHPRVAMTPHIAAVTRPAEAVDYISRTILDLESGK PVTGQVDRVRGY >gi|283548478|gb|GG730299.1| GENE 1652 1783880 - 1784470 299 196 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227375595|ref|ZP_03859062.1| acetyltransferase, ribosomal protein N-acetylase [Thermobaculum terrenum ATCC BAA-798] # 1 189 7 194 197 119 37 5e-25 MTPTLQGSLVTLRPLLETDAQLLIDAAADGELWSLPFTVVPSADTADSYIQKALKGQAEG TVMPFAVTLSSDQRVIGSTRFWKIDRENRKLEIGHTWYSQSWQKTAANTESKLLLLRYAF EQLKCVRVQFTTDVLNERSQAAILRLGAVQESIIRNERIMPDGRKRTSIRYSIIDDEWPQ VRTNLERRLSGYRKEK >gi|283548478|gb|GG730299.1| GENE 1653 1784828 - 1785151 140 107 aa, chain + ## HITS:1 COG:BMEI0152 KEGG:ns NR:ns ## COG: BMEI0152 COG2329 # Protein_GI_number: 17986436 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Brucella melitensis # 1 102 1 102 120 109 54.0 1e-24 MIAVLFEADALPEAQERYLQLASELKPLLSHTPGFISIERYQSLTTPGKILSLSWWEDEE SVAEWKKNMMHQAAQEEGRQSIFSFYRIRVTRVFHDYSSDKRTNQQV >gi|283548478|gb|GG730299.1| GENE 1654 1785504 - 1786094 255 196 aa, chain - ## HITS:1 COG:RSp0438 KEGG:ns NR:ns ## COG: RSp0438 COG1335 # Protein_GI_number: 17548659 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Ralstonia solanacearum # 12 194 12 194 197 212 55.0 4e-55 MSNQLSNISKNSALLVMDFQTIILNNFLPQESAGNVIRNTASLITAARAAGVPVIYISVG FRKGYPEVSKNNTIFSSIKENGIFIADNESTAIHPDVAPAENEVVIVKRRVGAFSFTELE MILRAQGIENLILTGVTTSGVVLSTVGQAFDLDYRLIVVSDCCADPDHDTNVFLLEKILP QHAFVTSSSEISKAWA >gi|283548478|gb|GG730299.1| GENE 1655 1786129 - 1787334 791 401 aa, chain - ## HITS:1 COG:RSp0437 KEGG:ns NR:ns ## COG: RSp0437 COG0477 # Protein_GI_number: 17548658 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 1 387 1 385 406 454 69.0 1e-127 MTQFYNSFWRRNLLVCFIGSFSTVFAMTLMLPFLPLYVEELGVSGHAAVVQWSGVAFSAT FITAGLIAPVWGKLGDRYGRKSMLVRASLGMAVTVSLMGLVTNIWQLVGLRLLVGLAGGY SSGATILIAVQAPRERAAWALGIVSSGVMAGNLVGPLAGGWLPGLIGIRTTFFCAGALIF LSFIMTLTLIREEVHKPADTVAKTGVSWSLLPARPVIICMLCTGLLLMLANMSIEPIITV YVRTLVSDASQITKVAGYVMAAAALGSIISASWLGKLADRIGHLRIITLALTAAGLLLIP QAFVTSGWQLIALSFLMGLALGGLLPCIAAVIRHRVPEGMVGSILGYSVAAQFAGQFIGP LIGGFVGGHIGMRAVFLATSCILLAGAAWNFKYIASQQRAD >gi|283548478|gb|GG730299.1| GENE 1656 1787381 - 1788070 95 229 aa, chain + ## HITS:1 COG:RSp0436 KEGG:ns NR:ns ## COG: RSp0436 COG1802 # Protein_GI_number: 17548657 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Ralstonia solanacearum # 27 228 1 202 205 204 54.0 1e-52 MHFTVNFWEIIAVMSQASEVENQLRKLILNMELGPGERLTERWAEATFNASRTPVRAALQ KLESEGLVCRDGLRWMVAPIDVAEVEQLCIYREILEVSALKLSASHMTEEQLNGLENLLK EKNADTSEGILDDAGTRFHLELTRLCQNLFIIEGVSDALRRLSRARWLDKAPSNPAWDDH REIIAALRSRNTDKAAELLAVHLCESRLRLLEAINSSRRSLRARGIAIS >gi|283548478|gb|GG730299.1| GENE 1657 1788198 - 1788896 489 232 aa, chain - ## HITS:1 COG:PA2280 KEGG:ns NR:ns ## COG: PA2280 COG0431 # Protein_GI_number: 15597476 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Pseudomonas aeruginosa # 26 232 24 230 230 311 73.0 8e-85 MEHFPALNADCFDWQIAERLELQEPPRILILYGSVRERSYSRFAAEEVGRLLTAMGAEVR LFNPSDLPLPDDAPDTHPKVIELRGLVRWSDGMVWSSPERHGAMSAVMKAQIDWIPLSEG AVRPSQGKTLAVMQVCGGSQSFNVVNQMRILGRWMRMFTIPNQSSVAKAWQEFDENGRMK PSSWYDRIVDVAEELFKITLLLKGQTGYLADRYSERKESHEELSSRVNQNKI >gi|283548478|gb|GG730299.1| GENE 1658 1788985 - 1789305 131 106 aa, chain + ## HITS:1 COG:arsR KEGG:ns NR:ns ## COG: arsR COG0640 # Protein_GI_number: 16131373 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli K12 # 2 106 4 108 117 135 61.0 2e-32 MLQPVQLFKILSDETRLAIVMLLRESGELCVCDICAATTESQPKISRHMAILREAKLVLD RREGKWIHYRLSPHMPAWAAETITASWQCLREDVAKWLEKSACTSC >gi|283548478|gb|GG730299.1| GENE 1659 1789349 - 1790638 1119 429 aa, chain + ## HITS:1 COG:arsB KEGG:ns NR:ns ## COG: arsB COG1055 # Protein_GI_number: 16131374 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Escherichia coli K12 # 1 429 8 436 436 609 88.0 1e-174 MLLAGSIFILTLVLVIWQPRGLSIGWSASIGAVLALGTGVIHIDDIPVVWHIVWNATAAF IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTSIVLLGAAVAALFANDGAALILTP IVIAMLLALGFSQTTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLGFTQYASVMV PVNLAAIAATLVMLHLFFRRDIPAKYDVSLLKMPASAIKDPATFRTGWIVLLFLLVGFFV LEPLGIPVSAIAAVGAAVLFMVAKRGHAINTGKVLRGAPWQIVIFSLGMYLVVYGLRNAG LTESLSAVLNMLANKGLWAATFGTGFLTAFLSSVMNNMPTVLIGALSIDGSAATGVVREA MIYANVIGCDLGPKITPIGSLATLLWLHVLAQKNMTITWGYYFRTGIIMTLPVLFVTLAA LAWRLSVTL >gi|283548478|gb|GG730299.1| GENE 1660 1790651 - 1791076 560 141 aa, chain + ## HITS:1 COG:arsC KEGG:ns NR:ns ## COG: arsC COG1393 # Protein_GI_number: 16131375 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Escherichia coli K12 # 1 141 1 141 141 248 85.0 3e-66 MSNITIYHNPACGTSRNTLEMIRNSGNEPTIIYYLDTPPTRDELIKLISDMGISVRALLR KNVEPYEQLGLGEDKFSDEQLIDFMLQHPILINRPIVVTPLGTRLCRPSEGVLDILPEGQ QGSFTKEDGEKVIDETGKRVK >gi|283548478|gb|GG730299.1| GENE 1661 1791367 - 1791981 -58 204 aa, chain - ## HITS:1 COG:no KEGG:EAMY_0569 NR:ns ## KEGG: EAMY_0569 # Name: not_defined # Def: hypothetical protein # Organism: E.amylovora # Pathway: not_defined # 1 204 111 314 314 380 94.0 1e-104 MLAKSQTFDTDWQRIALEKYIPQLVVWALPMANYCYSNASRIESVIQSKLIKSFDLRGFF NIKQLSILGKIEYPYMEKVKVFIIDTPDLDPASQLIFSNLYNKKTDDNFCKEFRSQFKNE IFQRESEIQRKRTIREHKVSHYENYGKPWTLKEMEKLRVMLVDFDLSPTEISTYLGREPR SISKKISENDKVTNFKWRESVGWL >gi|283548478|gb|GG730299.1| GENE 1662 1792671 - 1793324 353 217 aa, chain + ## HITS:1 COG:SMb21507 KEGG:ns NR:ns ## COG: SMb21507 COG1280 # Protein_GI_number: 16265085 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Sinorhizobium meliloti # 1 207 1 210 218 155 45.0 4e-38 MPSIETFITFLLALTLLEISPGPDMMLTIARGVGQGRRIALLTVLGNVFVAGFVQVSFLV LGLVTVVHAWPVALDLLRWAGAAYLMWLGIKMIATSGTDTRLRKTAKISDWNAVKEGALN SLTNPKSLLFMFAFLPQFVDPAVGPVWLQLLVLGSIQKLAGIVSLGSVAMASGTFGNWLG KHPGFIKWQERFTGVVMIGLGIRMLFSGSGVVSKSAS >gi|283548478|gb|GG730299.1| GENE 1663 1793512 - 1794363 41 283 aa, chain + ## HITS:1 COG:no KEGG:PC1_2708 NR:ns ## KEGG: PC1_2708 # Name: not_defined # Def: hypothetical protein # Organism: P.carotovorum # Pathway: not_defined # 1 283 1 283 283 461 79.0 1e-128 MKNIIDSALGESLLFSGTRFLFMGEAIHGVSEFSRLKMDIAERYFRKQTILIFEADSSGM LFSHQRSEDVSFRLNNFPLIMRTQEMREFLIWAISRQIPCLGIDCIPRRPLDNFPREWHS RRKQETEDYFEAKSSHDFFEWREMKMANQLINLASCYPEHRMFIMLHNLHIKRFGSQERG GLKLKSVREYFEDFFPEQSHSVAQLARCGTALNNDLTPFSFKINDPLSLENCSGLDNCIL LTESQMPDTCITWHHAFERESITPKKQYEGCFIFNEVHPPVLV >gi|283548478|gb|GG730299.1| GENE 1664 1794583 - 1795068 62 161 aa, chain + ## HITS:1 COG:SMb21092 KEGG:ns NR:ns ## COG: SMb21092 COG0454 # Protein_GI_number: 16264419 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Sinorhizobium meliloti # 14 157 19 157 158 66 29.0 2e-11 MNITICKPSEYDDLVDIFIEMETYYNQKLCLSRSDMTAYLRDKVFAADSNAEVHKVVCDG VIAAFSCVSVMYPSPRFSGQMFIKELFVSAPFRRAGIGRKMMGFIASRAQERGCFQLDWL SVAADPLAQKFYKSLGAQIIKSVNYHRVSGQKINELARSVG >gi|283548478|gb|GG730299.1| GENE 1665 1795255 - 1795674 218 139 aa, chain - ## HITS:1 COG:STM1857 KEGG:ns NR:ns ## COG: STM1857 COG0454 # Protein_GI_number: 16765198 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 1 139 1 139 139 264 87.0 3e-71 MDIQVVHNVTEYDREELLTGLRSYNAQFIDFSKHGQLGVYCRNESGEMVGGLIADRKGPW LCIDYLWVSESVRSGGLGSKLVSMAEKEGVLKGCIHGLVDTFSFQALPFYEKQGYILQMS LPDFPKVGSQRHYLVKTNL >gi|283548478|gb|GG730299.1| GENE 1666 1795885 - 1796742 265 285 aa, chain - ## HITS:1 COG:PA1239 KEGG:ns NR:ns ## COG: PA1239 COG4757 # Protein_GI_number: 15596436 # Func_class: R General function prediction only # Function: Predicted alpha/beta hydrolase # Organism: Pseudomonas aeruginosa # 1 279 14 287 294 137 35.0 2e-32 MNSIIIPVNQGGFLAATVWERSNAKAMVIIHPATAVVQAFYKGFAEYLFSRGFSVLTYDY RGTGLSKSGRVCHYSVSMSDWIEQDVGCITTWAKAHFPGVSLLAVGHSVGGHAVLLSSAT QALQAAVIVASHAGVTSTIKRTVEKVRVWCLLRVLAPVLCRIFGYMPARRLGLGEDLPAP VMRQWGKWSAMPGYFYDDPDWNARQRAGEITLPVLVMGFDDDPWANPEAIARLLEPVQNA KIECREIRRADFGLSSIGHMGFFRARCAEKLWPVVGQWLESQCPD >gi|283548478|gb|GG730299.1| GENE 1667 1796970 - 1797242 155 90 aa, chain + ## HITS:1 COG:ECs1614 KEGG:ns NR:ns ## COG: ECs1614 COG2076 # Protein_GI_number: 15830868 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 90 21 110 110 122 74.0 1e-28 MKFSDGFTRLWPSVATIVCYCIAFYLLAQTLSTIPTGIAYAIWSGAGIVLISLLGWLVSG QKLDFPAIAGMFLICAGVLVINIFSKSSAH >gi|283548478|gb|GG730299.1| GENE 1668 1797290 - 1797451 93 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085595|ref|ZP_06571121.1| ## NR: gi|291085595|ref|ZP_06571121.1| hypothetical protein CIT292_07772 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_07772 [Citrobacter youngae ATCC 29220] # 1 53 1 53 53 92 100.0 1e-17 MLDALLALRIFPNFRACAGLMLSATRLAEFLSRFGVFTAGDSFNANKNPRDCV >gi|283548478|gb|GG730299.1| GENE 1669 1797518 - 1797970 273 150 aa, chain + ## HITS:1 COG:STM4457 KEGG:ns NR:ns ## COG: STM4457 COG2801 # Protein_GI_number: 16767702 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 135 1 135 148 185 67.0 2e-47 MAKARFTEEQIADFLCQSKSGVPNKTLCEKYEFSPSTLRRWQELHAESIRQELRQIEANA SMVFLCFFCVAFILAVAFTRLAGALAIPPFLIYCVSYIRRFRKISAKHIKEQDIFLSRSG KGGYNAFYTLSWSFIVLFAFILGGVIVQLF >gi|283548478|gb|GG730299.1| GENE 1670 1798259 - 1798429 132 56 aa, chain + ## HITS:1 COG:no KEGG:SC3412 NR:ns ## KEGG: SC3412 # Name: yhfL # Def: putative outer membrane lipoprotein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 56 27 82 82 101 82.0 7e-21 MLRFAKITIVAGILATLTACTGHIENKKNDCSYDYFLHPAISISKMIGGCGPAVDQ >gi|283548478|gb|GG730299.1| GENE 1671 1798535 - 1799116 44 193 aa, chain - ## HITS:1 COG:STM3583 KEGG:ns NR:ns ## COG: STM3583 COG2091 # Protein_GI_number: 16766869 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Salmonella typhimurium LT2 # 1 189 1 188 192 217 58.0 1e-56 MYSITLGRVSVLSQHRLPPTLYDQAPQGVRRAEWLAGRALLVHTFTDLPEMIYGIRGKPA FLAGSPYFFNLSHSGDYIALLLSDEGDVGCDIEVCRPLARWRALANTLFCQEERRALDQY PPEHQLAAFWHLWTRKEAIIKQSGGSITQLPEINSLQTIDNIWVNHLQFGELCLAVCTPT PFSLAENIINDIT >gi|283548478|gb|GG730299.1| GENE 1672 1799138 - 1800262 878 374 aa, chain - ## HITS:1 COG:no KEGG:ECED1_3624 NR:ns ## KEGG: ECED1_3624 # Name: yghO # Def: putative DNA-binding transcriptional regulator # Organism: E.coli_ED1a # Pathway: not_defined # 1 374 7 380 380 639 78.0 0 MLAVERVTCKRELKAFINFPASLYGNDPHWISPLFVERSEHLSKKNPGVEHIQWQAWVAK DNGRVVGRITAQIDTLHRKLYGADTGHFGMIDAIDDPDVFRALFTTAEAWLESQGAREIT GPFSLNINQESGLLIDGFDTPPSTMMPHGKPYYSANIEQLGYTKGIDLLAYWMQRTDLSF PGALTRMMESAREKVTIRCINRQRFNEEMQVLREIFNSGWQQNWGFVPFTDYEFATMGKQ LKYLVPDDMIYIAEIDSVPCAFIVGLPNINEAIADLNGRLAPFGWAKLLWRLKVKGVHTA RIPLMGVRHEYQFSRIGPVIALLLIEALREPFEKHRIDALEMSWILESNTGMRTILERIG AVPYKRYRLFKKSL >gi|283548478|gb|GG730299.1| GENE 1673 1800567 - 1802300 940 577 aa, chain + ## HITS:1 COG:CC1165 KEGG:ns NR:ns ## COG: CC1165 COG0318 # Protein_GI_number: 16125417 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Caulobacter vibrioides # 12 561 11 563 567 447 43.0 1e-125 MTEVVSTRRPPMRHADFPTLVEALDYAALGSAGMYFYDRRNRLTSTLEYSELKHRAMSGA RKLLSLNLKKGARVALIAETNSGFVEAFFACQYAGLIAVPLAVPMGVGQRDSYTAKLKML LASCKPAAIVSGDEWLSIVRDAAVDIPAIHILSHEAVADLPESDVELPLPSPNDVAYFQY TSGSTRFPRGVIITHHAVMSNLQVISRDGIKVRADDRCVSWLPFYHDMGLVGCLLTPVAT QVSVDYLRTQDFAMRPMQWLKLISKNRGTVSVAPPFGYDLCLRRSNDEDLSGLDLSCWRV AGVGAEPISAERLNNFSEHFGQVAFDRQAFMPCYGLAENALAVSFSAESLGALTDEVDRD ILEYQGKAVPPVKSTRAVSTFINCGKALPGHQIDIRSAAGVSLPEREVGHIFISGPSLMS GYFQDPASQESIKTAGWLDTGDLGYLLNGDLYVTGRKKDLIIIRGRNIWPQDIEYVAELE PEIHSGDAIAFVTAHEQLVLQIQCKVTSEERRAQMVRSLSARIQSEFGIKADIELLPPHS IPRTSSGKPARSEAKKRYLTALTDAITSPLQLTGYAQ >gi|283548478|gb|GG730299.1| GENE 1674 1802297 - 1803217 470 306 aa, chain + ## HITS:1 COG:CC1164 KEGG:ns NR:ns ## COG: CC1164 COG0702 # Protein_GI_number: 16125416 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Caulobacter vibrioides # 5 287 9 286 317 107 32.0 3e-23 MTKTVAVTGATGFIGKHIVEALLTKGFMVRALTRGHHNSCDNRLAWVHGSLEDTRSLSAL VTDADYVVHCAGQVRGHTEDIFTQCNVTGSLRLLQAAGLNGQCQRFLFISSLAARHPELS WYAKSKYDAEQQLTAMAAKMGVPLGVFRPTAVYGPGDKELKPILNGLLRGFLPQFNTPEA RLSFLHVYDLADAVCQWLITEPVPTGAHELCDGIAGGYDWKHIRAIGEAVRHAPVRTVGI PLSVLKFMARLNAATFFVSRKEPMLTPGKIRELVHLDWSASNESLSEKMNWTPRVSLEQA LRDRLF >gi|283548478|gb|GG730299.1| GENE 1675 1803268 - 1803507 225 79 aa, chain + ## HITS:1 COG:no KEGG:EbC_37150 NR:ns ## KEGG: EbC_37150 # Name: not_defined # Def: putative acyl carrier protein # Organism: E.billingiae # Pathway: not_defined # 1 79 8 86 86 98 73.0 9e-20 MDYILCCLQEMVAGKAEIKPDSDLVNELGLESIKVMDLLMMLEDKFDVSIPLNILLDVRT PEQLLNALMPLLESSYGSL >gi|283548478|gb|GG730299.1| GENE 1676 1803494 - 1804666 975 390 aa, chain + ## HITS:1 COG:CC1162 KEGG:ns NR:ns ## COG: CC1162 COG0156 # Protein_GI_number: 16125414 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Caulobacter vibrioides # 1 388 1 389 404 418 54.0 1e-117 MGLYDRFTHLAHERKQLQVSGINPFGTCIDDIYSATEGRIGTQKVILAGTNNYLGLTFNA LAIAQGQAALASQGTGTTGSRMANGSYGPHLALEREIAEFFGRSTAIVFSTGYTANLGII STLATRGSVVLLDADSHASIYDACALGGAEIIRFRHNDAKDLERRMVRLGERARDAIIIV EGIYSMLGDVAPLAEIVDIKRRLGGYLIVDEAHSFGVMGPTGRGLAEAVGVEQDVDIIVG TFSKSLASIGGFAVGFDDMDVLRYASRPYIFTASPSPSSIASVRSSLGTIAQHPELREKL WRNAHLLYQGLSALGFTLGPNISPVVPVMIGTKEEGLMFWRQLISLGVYVNLVLPPAAPS GMTLLRCSVNAEHTEAQINSIIQAFSALRK >gi|283548478|gb|GG730299.1| GENE 1677 1804734 - 1805816 608 360 aa, chain - ## HITS:1 COG:VC2499 KEGG:ns NR:ns ## COG: VC2499 COG0795 # Protein_GI_number: 15642495 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Vibrio cholerae # 12 355 20 354 356 136 26.0 6e-32 MNIFSRYLIRYVFIGFAAAAGILLPLFTTFNLINELDDVSPGGYRWPQAVIVVLMTLPRN LIDLSPFIALLGGIAGLGHLSKTMELTAIRSTGLSIFKIAMITLTAGVMIIALLAVTDEW IAAPLQQHALRIRTTAMAQDPNADHQKNNMLWARRGDAFATIKSLDAKNQPVGIEIFHYR PDLSLETYIYAEKGRVLKNGTWTLEGVYEKRWLDGRETTEVHKQQQWKSIFTRINLEMLT MPAGSFSIKQLRSYISYLQDTGQPSIEFRVALWQKLGRPLLTLAMMLLAIPFTFSIPRSP GIGSRLAMGVIVGLLTYISDQIIVNIGILFDLQVQLTVLCPPVALLIIALILVSRFNRQE >gi|283548478|gb|GG730299.1| GENE 1678 1805813 - 1806883 516 356 aa, chain - ## HITS:1 COG:PA3828 KEGG:ns NR:ns ## COG: PA3828 COG0795 # Protein_GI_number: 15599023 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Pseudomonas aeruginosa # 3 345 2 350 372 124 30.0 2e-28 MRLIERYIMFEVSRLVAIIVGFLIFIFAIYSAQRYLTDAANGTLALTAVLAIVFYKVIIA LEMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSMF GRPWAYMQIYRLEQQSQSELDISHLRARKFNVNDHGHMILAATISPDTGHLTDMLIYTPS ENTSSLFRAHCGDITNPSPLTPSVALHSGTSYRLDHHNGQGDNGQIFQRLNIQLKPLMQN PITRRKASSMTALRTSTDPGDTAELQWRISRGINALLMALLAVSVSRVKPRQGRFSTLIP LSLLFTCIFYGGNVCRTLVANGALPVIPGVWLVQILMLFGVGMLIVRDTSGRVLFR >gi|283548478|gb|GG730299.1| GENE 1679 1806944 - 1807267 247 107 aa, chain - ## HITS:1 COG:STM4405 KEGG:ns NR:ns ## COG: STM4405 COG3054 # Protein_GI_number: 16767651 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 2 105 80 183 185 139 62.0 9e-34 MLIKAVKNANFPGELFQPTTIVNTDDEIFGTGFFVLGKIEKNKRNYPWAQFIIDSNGVGR MAWKLNEESSTIIVLNKDGDVQWVKDGALTEQEVNQVIIMVRKLIGG >gi|283548478|gb|GG730299.1| GENE 1680 1807539 - 1808366 535 275 aa, chain - ## HITS:1 COG:no KEGG:E2348C_3269 NR:ns ## KEGG: E2348C_3269 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 274 1 273 274 310 56.0 4e-83 MTKEKISSAITQRLFTAIDEDDVVDEYVDLPAKIHLQYSQKTLQKNYALCLQLWQEGCSR QALLSLVLKQLREGHLSDREKAQYKYMRARYKHLRFAQRLYLRSHYSGFIFNKTTVALGH FQDGFRNNNDKLTLTYGNKLRRFYLSSPVWAFVQYALGHGRLETSDGFAAYCRNQIAKLR AMVEKPLVTGSEFHDIRKIISQQVSFYDTLRSIEPDNLDAYKISRFLAAINGLMGRKHDE MVLANLEKHQPYETPAALDEQIRQRLEIFLARYPS >gi|283548478|gb|GG730299.1| GENE 1681 1808359 - 1809699 793 446 aa, chain - ## HITS:1 COG:yghQ KEGG:ns NR:ns ## COG: yghQ COG2244 # Protein_GI_number: 16130883 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 37 350 12 325 325 490 78.0 1e-138 MKKWFSDGAFRTILRNSAYLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIIQSYTKAI SDFVKFQTWQFVVQYGTPALEKNDSQQFRDVISFSFGLDIASGAVAIIGGMVLLPFISHS LGLDSNSFWLAVLYCTLIPSMASSTPTGILRVVNRFDLMAVQQATKPFLRALGSVVVYYN HWGFAGFVVTWYASNLIGGSMYWWFAARELRRRNIRNALRPRLFAPARRIKGAWGFVWAT NIAHSIWAARNSCSTVLVGIILGPAAAGLFKIAMTFFDAAGTPASLLKKSFYPEVMRLDP KTKQPWQLGLKSAFLAGGVGLLVAAVFILSGKPLISFVFGLKYLQAYDLIQIMLAAIVVS MVGFPLEALLLMAGKQRIFVTTQTIASVLYIVLLIVFSHMFGVIGAAFAYFSGQCLDILS SLGPTIQAYRRRHSLNFNVPSKAAND >gi|283548478|gb|GG730299.1| GENE 1682 1809859 - 1810614 530 251 aa, chain - ## HITS:1 COG:no KEGG:JW2952 NR:ns ## KEGG: JW2952 # Name: yghR # Def: hypothetical protein with nucleoside triphosphate hydrolase domain # Organism: E.coli_J # Pathway: not_defined # 2 241 11 250 252 339 69.0 5e-92 MTKVSSQLEYIPGLIAVVGCDGSGKSTLTADLVEHLEKQWVVERRYLGLVSGETGDKIKR LPLIGTWLERRLAAKSSKTQSMSTGSPALWAILIMYIFSLRRMAKMRKVQRLTQTGMLII GDRYPQAEFSGFHYDGPGIGIERVSGWLKCYLAKRERQLYQKMACYRPQLIIRLDIDIET AFSRKQDHDYEELRDKIAVMTQINYNGSNILELDSRMPYPMVLEKALDAATSVAMSSQRR TTKNHHQPIYQ >gi|283548478|gb|GG730299.1| GENE 1683 1810669 - 1811385 21 238 aa, chain - ## HITS:1 COG:no KEGG:ECP_3070 NR:ns ## KEGG: ECP_3070 # Name: not_defined # Def: ATP-binding site; other site # Organism: E.coli_536 # Pathway: not_defined # 13 235 7 229 232 317 68.0 2e-85 MCDPKSGETYTRSTVRVIAIVGCDGSGKSTLAAELVNHLTRQTPTKLFYLGQSSGRICEW ILTLPIIGHSLGQYLLKKAGRVHSRPGTPPGNITALVIFLLSCWRAYKFHRMLIGCQRGE LLITDRYPQAEIPGFSVDGPQLAKTTQGNWWIRKLRAAELKLYHWMASYPPLLLIRLAVD EQTAYSRKPDHNRVRLREKIALTSHLNFNGAEILDLDGREPAAQVLEKSLFAIRAHCL >gi|283548478|gb|GG730299.1| GENE 1684 1811547 - 1812272 366 241 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_3470 NR:ns ## KEGG: ECUMN_3470 # Name: yghT # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 229 1 229 230 347 74.0 2e-94 MQSKTPPLIAVIGSDGSGKSSVCEHLIIFLQKYGPATQVHLGKQAGNVERAVIKIPLLGR ILNKKISKHKVKDAKKLPGPVPALVITSFVIRRVFRFRRMLALRQRGMIILADRFPQTQI PGAYDGTVFPANVTGSAFVSWLAGLERSAFAWMTRHKPDLVIKLNVDLDVACARKPDHRR ESLAKKIAVTPQLTFDGAPLVDIDANMPLEEVLRDTEAAVARFMAARGYVDEHQTIATSH N >gi|283548478|gb|GG730299.1| GENE 1685 1812343 - 1813842 711 499 aa, chain - ## HITS:1 COG:STM3589 KEGG:ns NR:ns ## COG: STM3589 COG0306 # Protein_GI_number: 16766875 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Salmonella typhimurium LT2 # 1 497 1 498 498 675 73.0 0 MLYLFTDLDISTGLLLLLALIFVLFYEAINGFHDTANAVATVIYTRAMRPQLAIVMAAVF NFLGVLLGGLSVAYAIVHMLPTDLLLNMSSARGLAMVFSMLSAAIIWNFGTWYLGLPASS SHTLIGAIIGIGLTNALTTGSSVIKALNIPEVCNILASLIVSPFVGLVAAGTLIYLLQRY WNGTKKRARIHRPPAERKKKGGKKKPPFWTRIVLIFSAAGVAFSHGANDGQKGIGLIMLV LVGIAPAGFAVNMRSSGYDITRTHDAISNIKAYLQRHPDRLQQITQTASLPASNTADKPA GFHCHPANAMATLDQAETMLSGNLKRYSALDSSQRSQLRRMLLCIADTTTQLSEQQGIDH DDRWLLNKLRTDILITVEYAPVWIIIAVALALGIGTMIGWRRVTATIGEKIGKEGMTYAQ GMAAQITAALSIGLASFAGMPVSTTHVVSSAVAGTMIIDGGGLQRKTVTSILMAWVFTLP AAIILAGSLFWIALQLIQP >gi|283548478|gb|GG730299.1| GENE 1686 1814500 - 1817019 3324 839 aa, chain - ## HITS:1 COG:HI0643 KEGG:ns NR:ns ## COG: HI0643 COG0243 # Protein_GI_number: 16272586 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Haemophilus influenzae # 1 836 1 821 825 880 52.0 0 MKKNNDHDMAEQSQEAGMNLTRRRFLAGAGALMAAPLLAGMWPRSALAEAISQAMPQFVA LRQAESGILTGAHWGAFEAIVRDGKMVDVRPVKDDPYPNELITMAPHQVYAENRIKYPMV RKSWLEGGAKDCKPELRGRDEWVRVSWDKALHLVAGEISRLQKEHGPSSIYAGSYGWKSV GMFHNPRTLLQRMMNLAGGFVGYSGDYSTGAAQVIMPHVVGSVEVYEQQTAWPNVIENTE LVVMIGCNPMITLKNSWNLPDHVSQTGFEALKKKGTRMICIDPVHSDSARMLGAEWIGPH SYTDCALMAGIAHTLLVEKLHNADFLKTYTVGFDKFEAYLTGQDDGIVKDANWAADVSGV DAEVIKQLARDMAKHRTMIMGGWGIQRQHHGEQAHWMMVTLASMLGQIGLPGGGFGFSYH YSSGGSPTARGGILAGISAGSPTSPAAKDITPFPVARIADALANPGKTIDYNGTKVTYPD IKMVYVAGGNTFHQHQDTNNLVKAWQNPETVVVNEPYWTATAKHADIVLPVTTTYERNDM DMGGDYSQLYVFPLHQCVPPQHEAKNDFDVFAGIAEILGVHDAFTEGKDEMLWLKGMYDE MKAQARNARVALPPFDMFWASNNYIRFPIPEENKQWVRFADFRENPLLNPLGTPSGKIEI YSDAIAKMGYEDCKAIPTWMPPHEWYRGPEAAKYPLSLNTGHPINRLHSQLDNTPLRKKY AVADREAIWIHPKDASARGISAGDLVRAFNDRGQILVGAVITDHVREGVVRISEGAWFDP ADPSQPGSLCKNGNVNCLTFDVGSSSLAQGNCGQMSQLQIEKYTGPVLQNTAHDVPVGA >gi|283548478|gb|GG730299.1| GENE 1687 1817029 - 1818192 1224 387 aa, chain - ## HITS:1 COG:ECs2583 KEGG:ns NR:ns ## COG: ECs2583 COG3005 # Protein_GI_number: 15831837 # Func_class: C Energy production and conversion # Function: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit # Organism: Escherichia coli O157:H7 # 10 378 3 362 366 282 40.0 7e-76 MRKLSLERSGRRKIIFIALLVGIIIGVVLLAGTATIMHKTSDTEFCVSCHTMQQPLAEYQ GSVHFQNDKGIRAECADCHVPHQPIDYMLTKIGALKDVWGEMTGKIDTPEKYEAHKLAMA QSVWDGLKKSDSATCRSCHDYKAMDILAQTPEARKQHPVAIKEGETCIDCHKGVAHILPN MSGLAAAGASELANAAAKTPATATTLYTIQTQPFWLNEKASDHNDGNLMASTEVQVVKRD GDMVLADVKGWQQDGVTEAFYAARGKRIMSALLGEEARKALKVNSTVTDEETKQVWHEVD LQVWLPAKSLIGDQQKIWAYASDLMANNCTGCHGLTELNRFNANQWIGVVKGMSGRTSLT QEQVRLLTQYVQKHASDMPAAADQDKK >gi|283548478|gb|GG730299.1| GENE 1688 1818418 - 1819284 815 288 aa, chain - ## HITS:1 COG:YPO2742 KEGG:ns NR:ns ## COG: YPO2742 COG4235 # Protein_GI_number: 16122946 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Yersinia pestis # 5 287 4 293 408 187 41.0 2e-47 MIVAFLIMMILLLGTAALLFIPWSGRQRVDRNTMNHMIYRARLQELNEDIAPVNAAQQQQ LVDDLRLNLLEDLPESPKTDNKNSSYWVYILGVIILTSLCVGVFVRTSYVTRVMEWQQVV QQTPQLMQRVMDPQGKPLSQEELFRLALGLRSRLQQYPADQLSWTMLGRLQLVLNNPGAA LQAFDKARQLAPDNADAQLGYTEALLHSSDPNDSREAQQLLDTLLKNNHNDVRVLSLAAF NAFEHQQYDKAIAAWQLMLKLLPPDDSQREIIIRSIDRAKKEQIATLK >gi|283548478|gb|GG730299.1| GENE 1689 1819281 - 1819748 552 155 aa, chain - ## HITS:1 COG:YPO2741 KEGG:ns NR:ns ## COG: YPO2741 COG3088 # Protein_GI_number: 16122945 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Yersinia pestis # 18 150 17 148 170 164 68.0 6e-41 MRAILITLLTALISFQALAAIDTYPFKNEAQEQQFRQLTEQLRCPKCQNNSIADSNSMIA ADMRKKVWQLMEQGQSNQQITEYMVARYGNFVTYEPPVTPATIILWLLPACFVLGGALVI FRLSRRPRAARETELSPQEQARLQTLLDDNKRTLK >gi|283548478|gb|GG730299.1| GENE 1690 1819745 - 1820302 722 185 aa, chain - ## HITS:1 COG:ECs3084 KEGG:ns NR:ns ## COG: ECs3084 COG0526 # Protein_GI_number: 15832338 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 184 1 184 185 291 72.0 7e-79 MNRKVLYLPLVIFLVLVAALMWQLLRNSEGDDPTALESALVGKPLPAFHLASLEKPDVML DASSIINGKPVLLNVWATWCPTCRAEHQYLRSLAAQGIRIVGINYKDDRRKALDWLQELG NPYALGVFDGDGMLGLDLGVYGAPETFLIDGKGIIRYRHAGDVNEQVWQEEILPLWKKYS QQGGA >gi|283548478|gb|GG730299.1| GENE 1691 1820299 - 1822254 2499 651 aa, chain - ## HITS:1 COG:YPO2739 KEGG:ns NR:ns ## COG: YPO2739 COG1138 # Protein_GI_number: 16122943 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Yersinia pestis # 1 650 1 650 656 933 75.0 0 MIPEIGHFLLCLALGISCLLGLYPTWGAMRQDTRMMALAKPLSFAMFAAILGSFLILVYA FVVNDFTVQYVASNSNTLLPVWYRVAATWGAHEGSLLLWVLLMSGWTFAVAALSRNIPLE ASSRVLAVMGMISFCFLVFILLTSNPFVRTLPDFPIEGRDLNPMLQDIGLIFHPPMLYMG YVGFSVAFAFAIASLMTGRLDSAWARWSRPWTLAAWSFLTVGIVLGSAWAYYELGWGGWW FWDPVENASLMPWLAGTALIHSLSVTEKRGSFKSWTVLLAILAFSLCLLGTFLVRSGVLI SVHSFASDPTRGLFILALLVITIGGSLLLFAVKGGKVRSRVRHELWSRESLLLGNNVLLI AAMLVVLLGTLLPLIHKLLGLGSISIGEPFFNSLFIALMIPFSLLLGIGPLVRWRRDEFH KLRKRLLIAALVSIVLAVALPWLMQDHIKAMTVLGLLMSLWALVLTVMEVVERATDRHTF WRGLTRLGRSHWGMVAGHVGLVVTVIGIAFSQNYSIERDVRMKPGDSVDIHQYHFVFRDV QDITGPNYFGGEAVIDVSQNGRHVSTLRAEKRVYSSSRMEMTEAAIDGGLARDLYAALGE ELNDGSWAVRLYYKPFVRWIWFGGMLMALGGVLCILDPRYRLRKSLPENAQ >gi|283548478|gb|GG730299.1| GENE 1692 1822251 - 1822727 620 158 aa, chain - ## HITS:1 COG:ECs3086 KEGG:ns NR:ns ## COG: ECs3086 COG2332 # Protein_GI_number: 15832340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c-type biogenesis protein CcmE # Organism: Escherichia coli O157:H7 # 1 147 1 147 159 226 72.0 1e-59 MNPRRKVRLWLACGVLGGLALTVGLVMYALSANIDLFYTPGEVIYGKRENGQKPELGQRL RIGGMVMPGSVKRDDKTLDVTFKLYDARGVVEVSYTGILPALFREGQGVVAQGTLQDATH IRAKEVLAKHDENYTPPEIKEAMDENHHPAGKPQGAAQ >gi|283548478|gb|GG730299.1| GENE 1693 1822724 - 1822945 327 73 aa, chain - ## HITS:1 COG:YPO2737 KEGG:ns NR:ns ## COG: YPO2737 COG3114 # Protein_GI_number: 16122941 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Heme exporter protein D # Organism: Yersinia pestis # 1 64 1 64 100 66 64.0 2e-11 MTSAFHTWRDFWQMGGYAFYVWLAVAVTLLSLLLLVWHTRWQRRALLADVRRQQARERRV AAAREQAAKGESL >gi|283548478|gb|GG730299.1| GENE 1694 1822942 - 1823688 789 248 aa, chain - ## HITS:1 COG:ECs3088 KEGG:ns NR:ns ## COG: ECs3088 COG0755 # Protein_GI_number: 15832342 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 242 1 242 245 351 79.0 8e-97 MWKALHQLAIPERLYKVCGRFIPLMAVLSALFLAVGCIWGFVYAPADYQQGESYRIMYLH VPAAIWSMGIYGSMAVTAFVGLIWQMKMADKAVMAMALPGAVYTFIALVTGSAWGKPMWG TWWVWDARLTSELVLLFLYVGVIGLYHAFDDRRLAGRAAGILVLVGVVNLPIIHFSVEWW NTLHQGSTNMQKTIDPSMRMPLRLTIFGFLFLFITLTLMRMRNLILLQERRRPWVAQLAA GRKSEVNS >gi|283548478|gb|GG730299.1| GENE 1695 1823725 - 1824384 840 219 aa, chain - ## HITS:1 COG:ECs3089 KEGG:ns NR:ns ## COG: ECs3089 COG2386 # Protein_GI_number: 15832343 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Escherichia coli O157:H7 # 1 219 2 220 220 223 77.0 3e-58 MIKQIFWRDLRLAFRNCAEIINPLWFFLIIVTLFPLSIGPEPQLLRQIAPGIVWVAALLS SLLAMERLFRDDWQDGSLQQMMLMPVPLSLVVLAKVAAHWVVSGLPLLIISPLIATLFGL SVAEWQVLALTLLLGTPTLSFIGAIGVGLTVGLRRGGVLLSLLVLPLMIPLLIFATAAVG AAQMLLPVDGYLAILGAFLAGSATLSPFATAAALRISVQ >gi|283548478|gb|GG730299.1| GENE 1696 1824381 - 1825004 379 207 aa, chain - ## HITS:1 COG:ECs3090 KEGG:ns NR:ns ## COG: ECs3090 COG4133 # Protein_GI_number: 15832344 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, ATPase component # Organism: Escherichia coli O157:H7 # 1 204 1 204 205 228 61.0 5e-60 MLEIKNIACLRDERQLFCRLSCSIQSGEVVQISGPNGAGKTSLLQLLTGLSTPSEGQILW QGKPLHRMRDDWHRQLLWLGHQVGVKGGLTAEENLRFYHPEASLEARWQALEQVGLVGFE DVAVAQLSAGQQRRVALARLWLSRATFWILDEPFTALDVTGVQKLTSRLEQHVAQGGAVI LTTHQPLRPLCVPLRTIMLNEYEAAVA >gi|283548478|gb|GG730299.1| GENE 1697 1825371 - 1825664 321 97 aa, chain + ## HITS:1 COG:mlr3009 KEGG:ns NR:ns ## COG: mlr3009 COG2350 # Protein_GI_number: 13472645 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Mesorhizobium loti # 5 93 8 95 101 90 51.0 7e-19 MSVTYVVVLTYIKPLNEVDSLLPAHVEWLKKGYAEGLFLASGRKIPRSGGVILAKCDEME KLERYLSQDPFQQAGVAKVELIPFEATMTTAALKDIL >gi|283548478|gb|GG730299.1| GENE 1698 1825715 - 1826503 715 262 aa, chain - ## HITS:1 COG:ECs1266 KEGG:ns NR:ns ## COG: ECs1266 COG1702 # Protein_GI_number: 15830520 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Escherichia coli O157:H7 # 1 262 93 354 354 489 93.0 1e-138 MGRQKAVIKARREAKRVLRRDSRSHKQREDESVTSLVQMGGVEAIGMARDSRDATPITAR NEAQAHYLNAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDL GFLPGDVSEKFAPYFRPVYDVLVKRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVV ILDEAQNVTAAQMKMFLTRLGENVTVIVNGDVTQCDLPAHVRSGLSDALARFEEDEMVGI VRFNKDDCVRSALCQRTLNAYN >gi|283548478|gb|GG730299.1| GENE 1699 1826482 - 1826778 145 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085604|ref|ZP_06571122.1| ## NR: gi|291085604|ref|ZP_06571122.1| protein PhoH [Citrobacter youngae ATCC 29220] protein PhoH [Citrobacter youngae ATCC 29220] # 1 98 1 98 98 191 100.0 1e-47 METSCTGHVFHSSSSTLRGRFSSGSHFVTAKFLSLSLLILVTDALLGARSRVRCLIQKQA MAYKEANPQMFVRIIVPPAARVMYTYNSRCYPWEDKKQ >gi|283548478|gb|GG730299.1| GENE 1700 1827027 - 1828310 1236 427 aa, chain - ## HITS:1 COG:ycdB KEGG:ns NR:ns ## COG: ycdB COG2837 # Protein_GI_number: 16128983 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Escherichia coli K12 # 1 425 1 421 423 766 88.0 0 MQQDNENGVSEPSRRRLLKGMGALGGALALAGGCPVAHAQKPQSAPGTLSPDARSEVQPF YGQHQAGILTPQQASMMLVAFDVLASDKADLERLFRLLTRRFAFLTTGGPAPDTPNPRLP PMDSGILGAYIAPDNLTITLSVGSSLFDERFGLQTQMPKKLQKMTRFPNDSLDAALCHGD LLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPVNLLGFKDG TANPDATDAKLMQNVVWVTDGQGEPVWAQGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGR DKHTGAPLGMQHEHDVPDYASDPEGEVIALDSHIRLANPRTKETESSLMMRRGYSYSLGV TNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKTADHYL GQSLLEA >gi|283548478|gb|GG730299.1| GENE 1701 1828316 - 1829443 1505 375 aa, chain - ## HITS:1 COG:ECs1264 KEGG:ns NR:ns ## COG: ECs1264 COG2822 # Protein_GI_number: 15830518 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted periplasmic lipoprotein involved in iron transport # Organism: Escherichia coli O157:H7 # 1 375 1 375 375 654 90.0 0 MTLNFRRSALQLGITALFVSAFSAQAADIPQVKVTVNDKQCEPMTITVNAGKTQFIIQNH SQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGSAT TDAAQSDALLGLSGAITEYKAYVTAETTQLVAGTKAFTDAIKAGDVEKAKSLYAPTRQHY ERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNSTKGMDKYADQLN SDVLDLQTRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVDGAQK IVNLLRPQLQKSNAELLAKVDANFKKVDTILSKYRTKDGFETYDKLTDADRNALKGPITT LAEDLSQLRGVLGLD >gi|283548478|gb|GG730299.1| GENE 1702 1829502 - 1830335 1018 277 aa, chain - ## HITS:1 COG:ECs1263 KEGG:ns NR:ns ## COG: ECs1263 COG0672 # Protein_GI_number: 15830517 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Escherichia coli O157:H7 # 1 276 1 276 276 442 94.0 1e-124 MFVPFLIMLREGLEAALIVSLIASYLKRTQRGRWIGVMWIGVLLAAALCLGLGIFINETT GEFPQKEQELFEGIVAVIAVAILTWMVFWMRKVSRNVKVQLEQAVDNALQKGNHHGWALV MMVFFAVAREGLESVFFLLAAFQQDVGIWPPLGAMLGLATAVVLGYLIYLGGIRLNLGAF FKWTSLFILLVAAGLAAGAIRAFHEAGLWNHFQDVAFDISSVLSTHSLFGTLMEGIFGYQ EAPSVSEVAVWFIYLIPALIMFALPPRSGATASRTAP >gi|283548478|gb|GG730299.1| GENE 1703 1831080 - 1832588 1885 502 aa, chain - ## HITS:1 COG:STM1125 KEGG:ns NR:ns ## COG: STM1125 COG0591 # Protein_GI_number: 16764482 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Salmonella typhimurium LT2 # 1 502 1 502 502 867 94.0 0 MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWL LMGLPGAIFLSGISESWIAIGLVLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFED KSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATIIYTFIGGF LAVSWTDTVQASLMIFALILTPVMVVIGVGGFDDSLEVIKQKSIENVDMLKGLNFVAIIS LMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLGGAVAVGFFGIAYFNNNP SLAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKA FLRKNASQQELVWIGRIMVLVVALVSIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSV MWSRMTRNGALAGMIIGAVTVIVWKQFAWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAM QQRFAEADAHYHSAPPSRLQAE >gi|283548478|gb|GG730299.1| GENE 1704 1833011 - 1836973 4627 1320 aa, chain + ## HITS:1 COG:putA_2 KEGG:ns NR:ns ## COG: putA_2 COG4230 # Protein_GI_number: 16128980 # Func_class: C Energy production and conversion # Function: Delta 1-pyrroline-5-carboxylate dehydrogenase # Organism: Escherichia coli K12 # 526 1320 1 795 795 1419 90.0 0 MGTTTMGVKLDDATRERIKTAASRIDRTPHWLIKQAIFNYLERLENDDALPELPALLAGA ANEGEESITPQNEAHQPFLEFAEQILPQSVSRAAITAAYRRAETDAVPMLMEQARLPQPI AEQAHKLAYQLADKLRNQKTASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKAT RDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSG EPLVRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAY LVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMDELYPRLKSLTLLA RQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPFVIDYLIDL ATRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLI YPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIY APVGTHETLLAYLVRRLLENGANTSFVNRIADTTLPLDELVADPVDAVEKLAQQEGQAGL PHPKIALPRDLYGKGRENSGGLDLANEHRLASLSSALLNSALQKWHAKPILEHPVADGEM TPVVNPAEPKDIVGYVREATHSEVEQALQNAVNNAPIWFATPPQERAAILHRAAVLMEGQ MQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFDNETHRPLGPVVCISPWNF PLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGA QLTSDERVRGVMFTGSTEVATLLQRNIATRLDAQGRPIPLIAETGGMNAMIVDSSALTEQ VVVDVLASAFDSAGQRCSALRVLCLQDDIADHTLKMLRGAMAECRMGNPGRLTTDIGPVI DEEAKTNIERHIQAMRAKGRPVFQAARENSDDAREWQTGTFIAPTLIELESFDELQKEVF GPVLHVVRYTRNNLGNLIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVG AVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPENALGITLARQDADYPVDAQLKAALV QPLAALTDWAADRPSLRALCQQFGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDE QDALVQVAAVASVGSLILWPDDAFHRELAKRLPAAVSGRIQFARADNIATQPFDAVIFHG DSDQLRALCEAVAAREGAIVSVQGFARGESNILLERLYVERSLSVNTAAAGGNASLMTIG >gi|283548478|gb|GG730299.1| GENE 1705 1837162 - 1837557 289 131 aa, chain + ## HITS:1 COG:STM1123 KEGG:ns NR:ns ## COG: STM1123 COG3755 # Protein_GI_number: 16764480 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 130 1 130 131 182 83.0 1e-46 MKRIVLTCAALLLSGQALADDCASANTQAEMNTCAAEQFKAADAKLNETYQNALKRAAPP QRDLLKKAQTSWISLRDADCALISSGTEGGSVQAMISSQCLTDKTNEREAFLASLLQCEE GDLSCPLPPAS >gi|283548478|gb|GG730299.1| GENE 1706 1837554 - 1838192 769 212 aa, chain - ## HITS:1 COG:STM1122 KEGG:ns NR:ns ## COG: STM1122 COG1309 # Protein_GI_number: 16764479 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 212 1 212 212 359 87.0 2e-99 MVQRAEKKTGKRLQAVSAKRQAILTAALNIFSQYGIHGTRLEQVAEQAGVSKTNLLYYYS SKEGLYIAVLRQILDVWLAPLKAFREDFAPLVTIKEYIRLKLEVSRDYPQASRLFCMEML AGAPLLMAELEGDLKALIDEKSALIAGWVSSGKLAPVDPHHLIFMIWASTQHYADFAPQV EAVTGATLRDEAFFNQTVESVQRMIIEGIRVR >gi|283548478|gb|GG730299.1| GENE 1707 1838379 - 1838552 97 57 aa, chain - ## HITS:1 COG:STM1728 KEGG:ns NR:ns ## COG: STM1728 COG3729 # Protein_GI_number: 16765072 # Func_class: R General function prediction only # Function: General stress protein # Organism: Salmonella typhimurium LT2 # 1 57 1 57 60 60 89.0 5e-10 MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKNSHGSNKS >gi|283548478|gb|GG730299.1| GENE 1708 1838938 - 1839534 705 198 aa, chain + ## HITS:1 COG:STM1119 KEGG:ns NR:ns ## COG: STM1119 COG0655 # Protein_GI_number: 16764477 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Salmonella typhimurium LT2 # 1 198 1 198 198 347 96.0 6e-96 MAKVLVLYYSMYGHIETMAHAVAEGANKVDGAEVIIKRVPETMQPEIFLKAGGKTQNAPV ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQ EQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELS IARYQGEYVAGLAVKLNG >gi|283548478|gb|GG730299.1| GENE 1709 1839555 - 1839782 352 75 aa, chain + ## HITS:1 COG:no KEGG:t1802 NR:ns ## KEGG: t1802 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 1 75 1 75 75 120 98.0 1e-26 MPTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDK DSLFWGEQTIERKNV >gi|283548478|gb|GG730299.1| GENE 1710 1839821 - 1841062 1405 413 aa, chain - ## HITS:1 COG:no KEGG:SSON_1012 NR:ns ## KEGG: SSON_1012 # Name: agp # Def: glucose-1-phosphatase/inositol phosphatase # Organism: S.sonnei # Pathway: Glycolysis / Gluconeogenesis [PATH:ssn00010]; Microbial metabolism in diverse environments [PATH:ssn01120] # 1 413 1 413 413 764 90.0 0 MNKSLIAAAVAGAVLLSSAAQAQTAPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPKQ WPEWDVPGGQLTTKGGVLEIYMGHYMREWLAEQGMVKTGECPAPDTVYTYANSLQRTVAT AQFFVTGAFPGCDVPVHHQEKMGTMDPTFNPVITDDSAAFSQQAVQAMEKERSKMQLNDS YQLLEQMTNYKDSPSCKEKQQCSLTDAKDTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYY EGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVAQNVAKPLVKYIDKALVTERA KAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSNANRDLMKIE YVYQSSQQLRNADVLTLKSPAQRVTLELKGCPVDANGFCPIDKFDSVLNEAAK >gi|283548478|gb|GG730299.1| GENE 1711 1841150 - 1841857 545 235 aa, chain - ## HITS:1 COG:BMEI0150 KEGG:ns NR:ns ## COG: BMEI0150 COG0640 # Protein_GI_number: 17986434 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Brucella melitensis # 21 230 33 243 243 155 44.0 4e-38 MASVMLSEEEGELESQMALTAAVMADKSRSRMLCALMDGRAWTATELSAVADVSPSTASA HLARLCEQHFVVALAQGRHRYFRLAGADIAELLERLMGVAWAASTPRKITTPLSLRHART CYDHLAGEVAVRLFDTLVSRQWLTPEGETLTELGQEKLTEMGIVLFAGSSRRKLTCGCLD WSERRYHPGGVLGATLLRWFTEQKWIKTQTGSRHVTFTSLGIRKLQSEFGIKTTG >gi|283548478|gb|GG730299.1| GENE 1712 1841926 - 1842681 753 251 aa, chain - ## HITS:1 COG:AGc4214 KEGG:ns NR:ns ## COG: AGc4214 COG0730 # Protein_GI_number: 15889593 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 250 29 273 276 213 54.0 3e-55 MTSSLAFGPSLVMMIAATFVLAGMVKGVTGMGLPTVAMGILGSLISPVAAAAMLLLPSLI SNLFQFGGGGNTRRLLKRLWPMLLTVVVATLLASAWISGGDTARTQFALGVALVAYALWT LAGKTIAVSPQREKPYSLVVGFVTGLLTGGTGVFVMPAVPWIQSLGFEKDELVQALGISF TFSTLALALGLWWHNALPVQSLSLSALAIVPALMGQWMGTRVRRVISPLVFKRCFLLCLL GLGVEMMVRAA >gi|283548478|gb|GG730299.1| GENE 1713 1842817 - 1843323 500 168 aa, chain - ## HITS:1 COG:STM1116 KEGG:ns NR:ns ## COG: STM1116 COG0526 # Protein_GI_number: 16764474 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 1 168 1 168 168 236 76.0 1e-62 MVSKLRRWLREGAILLVLLAGAMLLMDAWRAPQLPASFDSTPLQTLDGETVTLATLSQDE PVLLYFWASWCGVCRFTTPEVARLRSEGENVMTIALRSGSEAEVSRWLLRKGVDFPVIND ADGAISRSWAISVTPTLVVMSQGRVVSTTSGWTSYWGMKLRLWWAKTF >gi|283548478|gb|GG730299.1| GENE 1714 1843313 - 1843936 887 207 aa, chain - ## HITS:1 COG:STM1115 KEGG:ns NR:ns ## COG: STM1115 COG1651 # Protein_GI_number: 16764473 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Salmonella typhimurium LT2 # 1 206 1 206 207 333 83.0 1e-91 MKMMIVLLLSLFSAVSVAKEPAPFTPEQEKQIEALIQEALFNDPNSPRIGAKQAKLTLIN FTDYNCPYCKQLDPMLEKIVQKYPDVAVVIKPLPFKGESSELSARTALMTWREHPQQFLA LHEKLMQKKGYHTDVSIKQAQEKAGATPVTLDAQSAETLSTNLQLARLVGVQGTPATIVG DELIPGAVPWETLEEVVKEKLAAANGQ >gi|283548478|gb|GG730299.1| GENE 1715 1843933 - 1845813 1607 626 aa, chain - ## HITS:1 COG:STM1114_2 KEGG:ns NR:ns ## COG: STM1114_2 COG4232 # Protein_GI_number: 16764472 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Salmonella typhimurium LT2 # 282 625 1 344 345 568 84.0 1e-161 MITVFRQALLCLLLLWLPISWAAEPGWLRSPDNDHASVRLRADTSASGETRLLLDVKLED GWKTYWRSPGEGGVAPSIAWNGEMAAVDWFWPTPARFEVANITTQGYHDRVTFPMVVRGR SPATLSGVLTLSTCSNVCLLTDFPFSVTPTTQDPTFAHDYAQAMGQVPLASGLTDSLRAG ARAGELVVEAQRAGGWTAPGLYLDTVDDADFGMPQIHVDGETLRATVPVHDSWGEGAPDL RGKSVTLVLADNGVAQESRLAIGEAPAGDNASLPLWQVALMALLGGLILNLMPCVLPVLG MKLGSILLVEEKSRRQIRRQFLASVAGILVSFMTLALLMTVLRLTHQALGWGIQFQNPWF IGVMVVVMLTFSASLFGWFEFRLPSAMTTTLATHGGNGLSGHFWQGAFATLLATPCSAPF LGTAVAVALTASLPTLWGLFIALGVGMSLPWLLVALRPGLALRLPRPGRWMNILRRLLGV MMLGSAIWLATLLLPHLGLTGQSTAKESVNWQPLSEQAIEDALAQHKRVFIDVTADWCIT CKVNKYNVLQKEDVQAALQQPDVVALRGDWTLPSAAITEFLKKRGQVAVPYNQIYGPGLP DGQALPTLLTRDAVLQTLTDAKGVTP >gi|283548478|gb|GG730299.1| GENE 1716 1845862 - 1846224 279 120 aa, chain - ## HITS:1 COG:no KEGG:SG1002 NR:ns ## KEGG: SG1002 # Name: scsA # Def: copper-sensitivity suppressor membrane protein A # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 120 1 120 120 154 83.0 1e-36 MAKRQRMGWWFLCLACVVVMVCTAQRMAGLHALQMNTVATSVVVSEQAQPDEATPVTPCE LSAKSLLAAPPVLFEGMILALCLLLSLLAPVRAFRLPFFPPRAISPPTLRVHLRFCVFRE >gi|283548478|gb|GG730299.1| GENE 1717 1846472 - 1847392 1114 306 aa, chain + ## HITS:1 COG:cbpA KEGG:ns NR:ns ## COG: cbpA COG2214 # Protein_GI_number: 16128966 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone # Organism: Escherichia coli K12 # 1 306 1 306 306 569 91.0 1e-162 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKETDAEARFKEVAEAWEVLSDEQ RRAEYDQLWQHRNDPQFNRQFQQGEGQSYSAEDFDDIFSSIFGQHARQSRQRHASRGHDI EIEVAVFLEETLTEHSRTISYNLPVYNAFGMVEREIPKTLNVKIPAGVGNGQRIRLKGQG TPGENGGPNGDLWLVIHIAPHPLFDIVNQDLEVVVPLAPWEAALGAKVTVPTLKESILLT IPAGSQAGQRLRIKGKGLVSKKHTGDLYAVIKIVMPPKPDDASAALWQQLADAQKTFDPR REWGKA >gi|283548478|gb|GG730299.1| GENE 1718 1847392 - 1847685 431 97 aa, chain + ## HITS:1 COG:no KEGG:CKO_02067 NR:ns ## KEGG: CKO_02067 # Name: not_defined # Def: chaperone-modulator protein CbpM # Organism: C.koseri # Pathway: not_defined # 1 96 1 100 101 138 77.0 8e-32 MANVTVTFTITEFCLYTGVSEEELHEIVGLGVIEPHDDETFDDHALTVMRRAVRLRQELE LDWPGIAVALTLLEENAQLRQENRLLRQRLSRFIAYS >gi|283548478|gb|GG730299.1| GENE 1719 1847808 - 1849085 1362 425 aa, chain - ## HITS:1 COG:PA2266 KEGG:ns NR:ns ## COG: PA2266 COG2010 # Protein_GI_number: 15597462 # Func_class: C Energy production and conversion # Function: Cytochrome c, mono- and diheme variants # Organism: Pseudomonas aeruginosa # 32 418 30 419 439 446 55.0 1e-125 MTIQWKALLPVLPLALLASAVQAGTTSQNLSQGQQLAAAGDCVACHTAAGGKAYAGGLKM STPIGAVYSTNITPDKETGIGNYRYEDFVKAVREGVAKDGRNLYPAMPYTSYAKITDRDM HILYDFFMQQVPAVKQQNRDSDIPWPLSMRWPLSIWNGIFHDDAVFMPDGAQSAQWNRGA YLVQGLAHCGTCHTPRGIGFQEKALDQNGAAYLTGGTLEGWHAPDLTGNVKSGLGRWSAQ EITEFLKTGRTDNSAAFGSMTDVVAHSTQHLSDDDLAAVAVYLKSLKSSDPQAVAPKADT ETSLALIKGDMSKPGAQEYMDNCSACHRIDGQGYAKTFPALAHNSAVLSDDPSSLISVVL RGGQMAVTQDAPTGLTMPDFAWRLDDKQVASLLTFVRSSWGNNAPAVTADDVKKLRKDLQ ETKQQ >gi|283548478|gb|GG730299.1| GENE 1720 1849099 - 1850778 1630 559 aa, chain - ## HITS:1 COG:PA2265 KEGG:ns NR:ns ## COG: PA2265 COG2303 # Protein_GI_number: 15597461 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Pseudomonas aeruginosa # 1 559 1 591 591 660 53.0 0 MTIKKEPVDVVIVGFGWTGSLMAMELADSGLKLFQNASKETVTVRHTQSDTALPYRRFGS FLPGDGVGGAGVHWNGMLWRPLEADLKMRSTVIEKYGADFIPADMTVQDYPFTYQEMEPF FDKYEKICGTAGQAGNVQGQIMEGGNPFEAERRNPYPTKALKQQYSGILFSKAAKELGYH PFPVPAANCSEPFTNPYGVQLGVCNYCGFCERFGCFNYSKASPQSCVLPALKQYNNFELR TESQVLRVNTDSTGKKATGVTYIDANGQEVEQPASLVVLSAFQLHNVRLLLLSKIGKPYD PVTGEGVVGRNYAYQMNGGISLFFNEDHDFNPFAATGTTGMFIDDFNAENFDHSKLGFVG GATISATITGGRPIQQMSTPKDAPKWGSGWKKAIKESYLHTMNVGSSGSVMPYKQCYLDL DPTYKDLHGQPLLRMTFDWQPNELKMTHFIGTKAEEIVKKINPPHYEMGFKKMDAHYDVR PYQSTHTTGGAVMGDNPKTSVVNKYMQSWDVPNVFVLGACCFPQNLAYNPTGIVGATALF AAHAIRTQYLANPGPLVQA >gi|283548478|gb|GG730299.1| GENE 1721 1850781 - 1851506 590 241 aa, chain - ## HITS:1 COG:no KEGG:ROD_10561 NR:ns ## KEGG: ROD_10561 # Name: not_defined # Def: putative gluconate dehydrogenase subunit # Organism: C.rodentium # Pathway: Pentose phosphate pathway [PATH:cro00030]; Metabolic pathways [PATH:cro01100]; Microbial metabolism in diverse environments [PATH:cro01120] # 1 241 1 241 241 444 90.0 1e-123 MSNNGNEGVPSRRRFLQQTLAIIPLTAMGGSLVTLSTSAASASSEGVSAQYVPRFFNNDE WMFVLAAVDRLIPADEYGPGAVSEGVPVFIDKQMELPYGYGHLWYMQGPFADAVPELGYQ SHLVPRETWRRGIKAVNQWCLEKQQKNFAELTHPQQEEVLRQLESGTLTFENVPGKIFFT QMLENTKEGYLADPLHGGNQTMASWKLIGFPGARADYQQVMDNPGKPYPLGPVSISGKRS V >gi|283548478|gb|GG730299.1| GENE 1722 1852174 - 1853802 1534 542 aa, chain - ## HITS:1 COG:YPO2182 KEGG:ns NR:ns ## COG: YPO2182 COG4166 # Protein_GI_number: 16122412 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Yersinia pestis # 5 542 6 545 545 556 51.0 1e-158 MTQDKSKVFTFTLLAACLISVNGAARAANVPAGTILAEKQELVRNNGSEPASLDPHKVES NVEFNLISDMFDGLVAVKPDGSIEPRLAVSWENKGNTVWTFHLRPGITWSDGSAITAQDV VWSWQRLVSPQTASPYASYLGNMHVVNAVDIALGNKDPATLGVKALDDTTLEITLTQPTA AFLAMLAHPSLVPLDKVLIGRFGDKWTRPEHFVSSGAYKLSQWVVNERIVAERNPHYWDD RHTVINKVTYLPISSESADVNRYKAGEIDIVYSVPVNQFAQLKKTMGDELYVSPQLSTYY YQFNTTRPPFNDPRVRRALNMALDKDIIAQKVMGQGQRAAWVISQPEIGGVQLHAPEYAS WPLDKRIAEAKKLLTEAGFGPEHPLSVNLLYNTFETHQRIAIAASSMWKKNLGVEAKLQN QEWKTMLDTMHTGNFDVVRYAWIADYDDASSFLNVFRTGDSENTARYSNPAFDEAMRNAA KASSLEERGKYYQQAEDLLGEDVPAIPIYHYVRTHLVKPWVGGFAPDNLGNYYTKDMFIK KH >gi|283548478|gb|GG730299.1| GENE 1723 1854072 - 1854731 890 219 aa, chain + ## HITS:1 COG:yccA KEGG:ns NR:ns ## COG: yccA COG0670 # Protein_GI_number: 16128937 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1 219 1 219 219 317 96.0 8e-87 MDRIISSSRDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY GLMFLTYKTADKPVGILSAFAFTGFLGYILGPILNTYLSAGMGDVIGMALGGTALVFFSC SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFET SNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD >gi|283548478|gb|GG730299.1| GENE 1724 1854820 - 1855149 516 109 aa, chain + ## HITS:1 COG:STM1084 KEGG:ns NR:ns ## COG: STM1084 COG2920 # Protein_GI_number: 16764443 # Func_class: P Inorganic ion transport and metabolism # Function: Dissimilatory sulfite reductase (desulfoviridin), gamma subunit # Organism: Salmonella typhimurium LT2 # 1 109 1 109 109 203 94.0 5e-53 MLIFEGKEISTDSEGYLKDTTEWSEPLAVAIADNEGITLSAEHWEVVRFVREFYLEFNTS PAIRMLVKAMANKFGEEKGDSRYLYRLFPKGPAKQATKIAGLPKPVKCI >gi|283548478|gb|GG730299.1| GENE 1725 1855146 - 1855427 238 93 aa, chain - ## HITS:1 COG:STM1083 KEGG:ns NR:ns ## COG: STM1083 COG1254 # Protein_GI_number: 16764442 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Salmonella typhimurium LT2 # 1 93 1 93 93 166 82.0 1e-41 MSKVCIIAWVYGRVQGVGFRYTTQHEAQRLGLTGYAKNMDDGSVEVVACGESEQVEQLMK WLKAGGPRSARIDRVLSEPHRPGDELKGFSIRY >gi|283548478|gb|GG730299.1| GENE 1726 1855522 - 1856712 585 396 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 22 389 21 386 396 229 33 3e-58 MSVRLVLAKGRDKSLLRRHPWVFSGAVARMEGKANLGETIDIVDHQGKWLARGAYSPASQ IRARVWTFDQSESIDIDFFTRRLQQAQTWRNWLAKKDGLDSYRLIAGESDGLPGITIDRF GNFLVLQLLSAGAEYQRAALISALQIVFPDCAIYDRSDVAVRKKEGMELTQGPVTGELPP ALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRYVENQRVLNCFSYTGGFAVSALM GGCRQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRAYRDRGEKFDVIVMD PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGVLLTFSCSGLMTTDLFQKIIADAAIDA GRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRIM >gi|283548478|gb|GG730299.1| GENE 1727 1856770 - 1857087 395 105 aa, chain + ## HITS:1 COG:ECs1050 KEGG:ns NR:ns ## COG: ECs1050 COG3785 # Protein_GI_number: 15830304 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 105 18 122 122 190 94.0 7e-49 MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLDEPSADELAVNNELRAAPWYHVVMEDDN GLPVHTYLAEAQLSSELQEEHPEQPSMDELARTIRKQLQAPRLRN >gi|283548478|gb|GG730299.1| GENE 1728 1857146 - 1857559 577 137 aa, chain - ## HITS:1 COG:yccU KEGG:ns NR:ns ## COG: yccU COG1832 # Protein_GI_number: 16128932 # Func_class: R General function prediction only # Function: Predicted CoA-binding protein # Organism: Escherichia coli K12 # 1 137 28 164 164 257 97.0 4e-69 MKETDIAGILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQG YATLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLAV VMDRCPAIEIPRLGLAK >gi|283548478|gb|GG730299.1| GENE 1729 1857732 - 1858394 468 220 aa, chain + ## HITS:1 COG:STM1077 KEGG:ns NR:ns ## COG: STM1077 COG3110 # Protein_GI_number: 16764436 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 355 83.0 5e-98 MKAGIVTALIALCLPVTVFATSLRLSNDIDLLVLDGKKVSSSLLRGADSIELENGRHQLV FRVEKTIRLSGHEERLYISPPLVISFDTQLVSQVNFHLPRLNNEREASHFDAAPRVELLD GDAMPIPVKLDILSITSTAKIVDYEMETERYNKAAKHASLPQFATMMADDSALLSGVSEL DRVPPQSQTLTEQRLKFWFGQADAQTRSNFLQWAQKQPSS >gi|283548478|gb|GG730299.1| GENE 1730 1858488 - 1858946 460 152 aa, chain + ## HITS:1 COG:STM1076 KEGG:ns NR:ns ## COG: STM1076 COG1803 # Protein_GI_number: 16764435 # Func_class: G Carbohydrate transport and metabolism # Function: Methylglyoxal synthase # Organism: Salmonella typhimurium LT2 # 1 152 1 152 152 299 96.0 1e-81 MELTTRTLPARKHIALVAHDHCKKMLMSWVERHQPLLEKHVLYATGTTGNLIQRATGMDV NAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNV STADFIIQSPDFNDATDILIPDYARYLAERLK >gi|283548478|gb|GG730299.1| GENE 1731 1858979 - 1861033 1592 684 aa, chain - ## HITS:1 COG:helD KEGG:ns NR:ns ## COG: helD COG0210 # Protein_GI_number: 16128929 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Escherichia coli K12 # 1 684 1 684 684 1184 86.0 0 MELKATSLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLLAIHCKRGLVWGELEFV LPDDKVVRLHGTEWTETQRFHHHLNTLWQQWSQEMSEVAAGVLQQQLDAIAARTSENKWL TRSQTSGLQQQILRAFAALPLPVHRLEEFENCRDALRQCQAWLKDIEACRLQHNQAYTDA MLAEHAEFFQRIESSPLNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLARGEAA AEQILLLAFGRKAAQEMDDRIRERLNTDEVTARTFHSLALHIISQGSKKVPTVSKLENDA VARNKLFVTTWRQQCSEKKAQAKGWRQWLEEEMQWSVPEGNFWDDEKLQRRLASRLDRWV SLMRMHGGAQAEMIANAPEEIRDLFSKRIKLMAPLLKAWKSALKDENAVDFSGLIHQAIV ILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGAQL SLTTAFQQNFGEGDRCHLDTTYRFNSRIGEVANQFIQQNPHQLTKPLNSLTTGDKKAVTL LDENQLDLLLDKLSGFVKAEERILVLARYHHLKPASLEKAATRWPKLQLDFMTIHASKGQ QADYVIVVGLHEGNDGFPAPARESIMEEALLPAVEDFPDAEERRLLYVALTRARHRVWLL FNKETPSCFVDELKRLDVPVARKP >gi|283548478|gb|GG730299.1| GENE 1732 1861159 - 1861605 422 148 aa, chain + ## HITS:1 COG:STM1074 KEGG:ns NR:ns ## COG: STM1074 COG3304 # Protein_GI_number: 16764433 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 133 1 133 148 228 94.0 2e-60 MRTVLNILNFVLGGFATTLAWLLATLVSIVLIFTLPLTRSCWEITRLSLFPYGNEAIHVD ELNPAGKNVLLNTGGTLLNIFWLIFFGWWLCLMHIVSGIAQCFTIIGIPVGIANFKIAAI ALWPVGRRVVSVEVARAAREANARRRFE >gi|283548478|gb|GG730299.1| GENE 1733 1861624 - 1863777 1488 717 aa, chain + ## HITS:1 COG:STM1073 KEGG:ns NR:ns ## COG: STM1073 COG1289 # Protein_GI_number: 16764432 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 707 1 707 717 1317 93.0 0 MLSPLLKRYTWNSTWLYYVRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRL AGRLRNLIITLVCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAFGAL LIAIYTMLGTSLYDQWYQQPILLLAGAIWYNLLTLTGHLLFPIRPLQDNLARSYEQLAHY LELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY YFVAQDIHERASSSHIQYQTLRDHFRHSDVMFRFQRLMSMQGQACTQLSRCILLRTPYQH DPHFERVFTHIDAALDRMRASGAPADLLNTLGFLLSNLRAIDAQLATIESEQAQVLSRNE SENQLADDSPHGFSDIWLRLSRNFTPESALFRHAVRMSLVLCVGYAIIQVTGMNHGYWIL LTSLFVCQPNYNATRHRLALRIIGTLVGIAIGLPILWFVPSLEGQLILLVITGVLFFAFR NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLP RVIERATDANCRYLDAILEQYHQGRDNRMAYRIARRDAHNRDAELASVVSNMSSEPDVTA QTRETAFRLLCLNHTFTSYISALGAHREQLTNPEVLALLDDAVCYVDDALHYQPADEQRV HQALEGLKHRIQHLEPRPDSKEPLVVQQVGLLIALLPEIRRLQQQIAVLPSNTPVPA >gi|283548478|gb|GG730299.1| GENE 1734 1863755 - 1864369 444 204 aa, chain - ## HITS:1 COG:STM1072 KEGG:ns NR:ns ## COG: STM1072 COG3070 # Protein_GI_number: 16764431 # Func_class: K Transcription # Function: Regulator of competence-specific genes # Organism: Salmonella typhimurium LT2 # 1 199 1 199 201 313 76.0 1e-85 MKELSYARIYKSQEYLASLGTINYRSLFGSYSLTVGDTVFAMVAKGELYLRACEQSVQYC AKNSPVWLTFIKRGRPVVLNYYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLR ELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNNPALTVKTLYALEGAVGGVHE AALPAVRRQELVEWVSSLTPEPGY >gi|283548478|gb|GG730299.1| GENE 1735 1864715 - 1865095 412 126 aa, chain + ## HITS:1 COG:ECs1042 KEGG:ns NR:ns ## COG: ECs1042 COG5404 # Protein_GI_number: 15830296 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: SOS-response cell division inhibitor, blocks FtsZ ring formation # Organism: Escherichia coli O157:H7 # 1 126 44 169 169 186 88.0 1e-47 MMTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQSAGLPLTKVMQISQLSPCNTLESM VRALRTGNYSVVIGWLAEELTEDEHAELVKAADEGNAMGFIMRPVRAQSLAGRQHSGLKI HSNLYH >gi|283548478|gb|GG730299.1| GENE 1736 1865453 - 1866511 971 352 aa, chain + ## HITS:1 COG:STM1070 KEGG:ns NR:ns ## COG: STM1070 COG2885 # Protein_GI_number: 16764429 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Salmonella typhimurium LT2 # 1 352 1 350 350 598 89.0 1e-171 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDIGNNQINNAGPTHESQLGA GAFGGYQVNPYVGFEMGYDWLGRMPYKGYTDETHNNGAFKAQGVQLTAKLGYPITDDLDV YTRLGGMVWRADAKNNTGFKDHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDANTV GGRPDNGLLSVGVSYRFGQQEEAAPVVVAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEG QQALDQMYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPADK ISARGMGESNPVTGNTCDNVKARAALIDCLAPDRRVEIEVKGIKDVVTQPQA >gi|283548478|gb|GG730299.1| GENE 1737 1866603 - 1867055 398 150 aa, chain - ## HITS:1 COG:ECs1040 KEGG:ns NR:ns ## COG: ECs1040 COG3120 # Protein_GI_number: 15830294 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 150 1 150 150 233 91.0 8e-62 MKYQQLENLESGWKWKYLVKKHREGELITRYVEASAAKEAVDLLLTLENEPVRVNAWIEE HMNPALLNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFMVWQRLAGLAQRRGKTLSETIV QLIEDAEHKEKYANKMSTLKQDLQALLGKE >gi|283548478|gb|GG730299.1| GENE 1738 1867241 - 1869001 1527 586 aa, chain + ## HITS:1 COG:STM1068 KEGG:ns NR:ns ## COG: STM1068 COG1067 # Protein_GI_number: 16764427 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent protease # Organism: Salmonella typhimurium LT2 # 1 586 1 586 586 1042 88.0 0 MTITKLAWRDLVPDTDSYQEVFAQPHVTDDTDTLLSDTQPRLQFALEQLLQRWTTSSFML VKAPEELEYLNLIATAARPLHTDAGSLTGGHYDISGHTIRYRAAEKAEDNFATLTQVVNA DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLVISLRTLLAQPLLWMRLKAIVSHERF DWVAFDESRPLPVSVPPMPLKLKVILVGERESLADFQDMEPELAEQAIYSEFEDNLQIVD AETMTQWCQWVTHTATRNNLPYPAPDAWQVLIREAVRYTGEQDTLPLNPLWIIRQFKEVA PLCEGETCTAEQFSLMLAQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEF PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE KIEGFFAICQQRELTGTQGVIIPSANVRHLSLQPALLQAIEEEKFTIWAVDDVTDALPLL LNLVWDGEGQTTLMQTIQERIATATQQEGRHRFPWPLRWLNWIIPN >gi|283548478|gb|GG730299.1| GENE 1739 1869070 - 1869588 773 172 aa, chain + ## HITS:1 COG:ECs1038 KEGG:ns NR:ns ## COG: ECs1038 COG0764 # Protein_GI_number: 15830292 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 # 1 172 1 172 172 341 98.0 4e-94 MVDKRESYTKEDLLASGRGELFGAKGPQLPAPSMLMMDRVIKMTETGGNFDKGYVEAELD INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTANDLKVGLFQDTSAF >gi|283548478|gb|GG730299.1| GENE 1740 1870129 - 1870692 512 187 aa, chain - ## HITS:1 COG:STM1065 KEGG:ns NR:ns ## COG: STM1065 COG3009 # Protein_GI_number: 16764424 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 187 1 187 187 327 89.0 8e-90 MKKWLVVMMAVWLTSCSSSGENKSYYQLPIAQGGVQSTANQGNRLLWVEQVAVPDYLAGN GVVYQTSDVQYVIANNNLWASPLDQQLRNTLVTNLSMQLPGWVVASQPLGSTQDTLNVTV TGFHGRYDGKVIVSGEWLLNHQGQLIKRPFHIEAVQTKDGYDEMVKVLANAWSQEATAIA QELKRIP >gi|283548478|gb|GG730299.1| GENE 1741 1870689 - 1872329 1739 546 aa, chain - ## HITS:1 COG:STM1064 KEGG:ns NR:ns ## COG: STM1064 COG3008 # Protein_GI_number: 16764423 # Func_class: R General function prediction only # Function: Paraquat-inducible protein B # Organism: Salmonella typhimurium LT2 # 1 546 1 546 546 1011 92.0 0 MESKSGEAKVQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEVTLITTNAEGIEGGKT TIKSRSVDVGIVESATLTDDLTHVEIKARLNSGMEKLLHKDSVFWVVKPQVGREGISGLG TLLSGAYIELQPGNKGNKLENYQLLDSPPLAPPDAKGIRVILDSKKAGQLSPGDPVLFRG YRVGSVETSTFDAQKRTISYQLFINAPNDRLVTSNVRFWKDSGIAVDLTSAGMRVEMGSL STLFGGGVSFDVPEGLEQGEPVGQQSAFNLYDDQKSIQDSLYTDHIDYLMFFKDSIRGLQ PGAPLEFRGIRLGTVSKVPFFSPNMRQVFNNDYRIPVLVRIEPERLKAQLGEETDVGAHL AELLKRGLRASLKTGNLVTGALYVDLDFYPKEPPITGVREFNGYQIIPTVSGGLAQIQQR LMDALDKINNLPLNPMIEQATNTLSESQRTMKHLQTTLDNMNKITSSKSMQDLPADMQTT LRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNDKSNALVFEAKDKKDPE PKRAKQ >gi|283548478|gb|GG730299.1| GENE 1742 1872334 - 1873587 805 417 aa, chain - ## HITS:1 COG:ECs1034 KEGG:ns NR:ns ## COG: ECs1034 COG2995 # Protein_GI_number: 15830288 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein A # Organism: Escherichia coli O157:H7 # 1 417 1 417 417 747 91.0 0 MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVEWDAPRQRPTAYVLAALF MLLLSNLFPFVNMNVAGVASEATLLEIPSVLFSEDYASLGTFFILFVQLVPAFCLLTILL LVNRVEMPDRLKAGLARVLFQLKSWGMAEIFLAGVLVSFVKLMAYGDIGVGSSFIPWCFF CVLQLRAFQCVDRRWLWDDIAPMPAINQDLKPGVPGIRQGLRSCSCCTAILPADEPVCPR CGTKGYVRRKNSLQWTMALLFTSVMLYLPANILPIMITDLLGSKLPSTILEGVVLIWSEG SYPVAAVIFIASIMVPTLKMIAIAWLCWDAKGHGKRDSERMHLIYEVVEFVGRWSMIDVF VIAVLSALVRMGGLMNIYPAMGALMFALVVIMTMFSAMTFDPRLSWDREPEPDHEES >gi|283548478|gb|GG730299.1| GENE 1743 1873603 - 1875510 2119 635 aa, chain - ## HITS:1 COG:STM1062 KEGG:ns NR:ns ## COG: STM1062 COG0488 # Protein_GI_number: 16764421 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Salmonella typhimurium LT2 # 1 635 1 635 635 1138 94.0 0 MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI IYEQDLVVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMTDPSDKNLNEM ARVQEMLDHHNLWQLESRINEVLAQLGLDPNAALSSLSGGWLRKAALGRALVSNPRVLLL DEPTNHLDIETIDWLEGFLKSFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERRE VMGTAKMQVEEASRSGKIVFEMENVDYQVDGKQLVKDFSAQVQRSDKIALIGPNGCGKTT LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARSQQSQYVAFKQPI AKKTEEAVAPKAEIVKRGTSKLSYKLQRELELLPALLEELEAKLEALQAQVADAAFFSQP HEQTQQVLANLNEAEQELEQAFERWEYLESLKSGA >gi|283548478|gb|GG730299.1| GENE 1744 1875523 - 1877631 2425 702 aa, chain - ## HITS:1 COG:STM1061_1 KEGG:ns NR:ns ## COG: STM1061_1 COG0116 # Protein_GI_number: 16764420 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Salmonella typhimurium LT2 # 1 379 1 379 379 724 93.0 0 MNSLFASTARGLEELLKTELENLGALECQVVQGGVHFKGDTRLVYQSLMWSRLASRIILP MGECKVYSDLDLYLGVQAIDWTEIFNPGATFAVHFSGLNETIRNSQYGALKVKDAIVDAF TRKNLPRPNVDRESPDLRINVWLNKDTASIALDLSGDGLHQRGYRDRAGQAPIKETLAAA IVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGLHRGYWGFSGWAQHDDAVWQEVK AEAQVRARKGLADYTSHFYGSDSDARVIEKARSNARRAGIADLMTFEVKDVAKLSNPLPK GPYGTVISNPPYGERLDSEPALIALHSLLGRTMKNQFGGWNLSLFSASPDLLSSLQLRAD KQFKAKNGPLDCVQKNYHVAEATADSKPATVAEDYANRLRKNIKKLEKWARQEGIECYRL YDADLPEYNVAVDRYGDWVVVQEYAPPKTVDAQKARQRLFDIIAATLSVLEIAPNKLVLK TRERQKGKNQYQKMNEKGEFIEVSEYNARLWVNLTDYLDTGLFLDHRIARRMLGQMSKGK DFLNLFSYTGSASVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLSGRAHRLIQADCLG WLRDANEQFDLIFIDPPTFSNSKRMEDSFDVQRDHLALMRDLKRLLRKEGTIMFSNNKRG FRMDLDGLAELGLKAQEITQKTLSQDFARNRQIHNCWLITAA >gi|283548478|gb|GG730299.1| GENE 1745 1877772 - 1878836 719 354 aa, chain + ## HITS:1 COG:ycbX_1 KEGG:ns NR:ns ## COG: ycbX_1 COG3217 # Protein_GI_number: 16128914 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1 259 15 273 273 499 90.0 1e-141 MRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPFHDGLHLTAPDGS SALVRFADFASQDAPTEVWGNHFTARIAPAAINQWLSAFFSRDVQLRWVGPQLTRRVKRH ADVPLSFADGYPYLLANEASLRDVQQRCPASVKMEQFRPNLVVSGAAAWEEDTWKTIRIG DVIFDVAKPCSRCIFTTVSPEKGQKHPSGEPLATLQTFRTAVDNGDVDFGQNLIARNSGV IRVGDEVEILSTGPARVYGAAETDDTVPVQQPDATVLIEWQGKTFRGNNQQVLLEQLENQ GIRIPYSCRAGICGCCRIRLVEGEVSPLKKSAMGDDGTILCCSCVPKTAIRLES >gi|283548478|gb|GG730299.1| GENE 1746 1878833 - 1879375 669 180 aa, chain - ## HITS:1 COG:no KEGG:CKO_02122 NR:ns ## KEGG: CKO_02122 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 180 8 187 187 338 91.0 5e-92 MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAFSPSGFCVDDAALYFSF EEKCRYLDLAKEQKAELVLNALVAIRYLKPQMPKSWHFVAHDINWSPMVGDAACVDLSDT DEQVNLLVVEPGENAALCLLAQPGVVIAGRTMQLGDAIKIMNDRLKPQAIVDSFSLEQAV >gi|283548478|gb|GG730299.1| GENE 1747 1879541 - 1880551 1045 336 aa, chain - ## HITS:1 COG:STM1058 KEGG:ns NR:ns ## COG: STM1058 COG0167 # Protein_GI_number: 16764417 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 336 1 336 336 652 96.0 0 MYYPFVRKALFQLDPERAHELTFQQLRRITGTPLEALVRQKVPAKPVTCMGLTFKNPLGL AAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGV DNLVENVKKSHFDGILGINIGKNKDTPVENGKDDYLICMEKVYAYAGYIAINISSPNTPG LRTLQYGEALDDLLTAIKNKQNDLQAIHHKYVPVAVKIAPDLSLEELIQVADSLVRHNID GVIATNTTLDRSLVQGMKNCDQMGGLSGRPLQLKSTEIIRQLSQELKGQLPIIGVGGIDS VIAAREKIAAGATLVQIYSGFIFKGPPLIKEIVSNI >gi|283548478|gb|GG730299.1| GENE 1748 1880495 - 1880635 60 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|213615837|ref|ZP_03371663.1| ## NR: gi|213615837|ref|ZP_03371663.1| hypothetical protein SentesTyp_15729 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] # 1 44 1 44 45 71 88.0 2e-11 MSALWIELEKGFTNEGVVHELSWIPGVQTGGVLCAIASKKGIDLRQ >gi|283548478|gb|GG730299.1| GENE 1749 1880794 - 1881369 803 191 aa, chain + ## HITS:1 COG:ZycbP KEGG:ns NR:ns ## COG: ZycbP COG0431 # Protein_GI_number: 15800798 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Escherichia coli O157:H7 EDL933 # 1 191 1 191 191 320 87.0 9e-88 MRIITLAGSPRFPSRSSALLEYAREKLNGQDVEVFHWNLHNFAPEDLIYARFDSPALKTF VEQLHDADGLIVATPVYKAAYSGALKTLLDLLPERALEGKVVLPLATGGTVAHLLAVDYA LKPVLSALKAQEILHGVFADDSQVIDYQHKPQFTPNLQLRLDNALDAFWLALHRRDVQPP QLNALRGAAHA >gi|283548478|gb|GG730299.1| GENE 1750 1881362 - 1882336 870 324 aa, chain + ## HITS:1 COG:ssuA KEGG:ns NR:ns ## COG: ssuA COG0715 # Protein_GI_number: 16128903 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Escherichia coli K12 # 12 324 21 333 333 534 87.0 1e-151 MLNLLRRGTPWLALAGLLSLSTLAHAAESTPDALRIGYQKGSVGMALAKSHQLLEKRYPQ TKISWVEFPAGPQMLEALNIGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILV PKNSPIQSVAQLKGHKVAFQKGSSAHNLLLRALQQAGLKFTDIQPTYLTPADARAAFQQG NVDAWAIWDPYYSAALLQGDVRVLKDGSDLKQTGSFYLAARPYAEKNGEFVLGVLDTFSQ ADALTLSQRQQSITLLAKTMGLPEPVIASYLDHRPPTTISPVSASVAALQQQTADLFYDN RLVPKKIDIRQRIWQPTQHAGAKL >gi|283548478|gb|GG730299.1| GENE 1751 1882333 - 1883478 1189 381 aa, chain + ## HITS:1 COG:ECs1018 KEGG:ns NR:ns ## COG: ECs1018 COG2141 # Protein_GI_number: 15830272 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Escherichia coli O157:H7 # 1 381 1 381 381 714 93.0 0 MSLNMFWFLPTHGDGHYLGTEESSRPVDHAYLQQIAQAADRLGFTGVLIPTGRSCEDAWL VAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDG VFLDHTERYEASAEFTQIWRRLLQGETVDFNGKHMHVRGAKLFFPPVQQPRPPLYFGGSS DVAQDLAAEQVDLYLTWGEPPEQVKEKIEQVRAKAAALGRKIRFGIRLHVIVRETTDEAW QAAERLISHLDDDTIAKAQAAFSRTDSVGQQRMAALHNGKRDKLEISPNLWAGVGLVRGG AGTALVGDGPTVAARINEYAALGIDSFVLSGYPHLEEAYNVGELLFPHLDVSIPEIPQPQ RLHQQGEAVANEFIPRKVAQS >gi|283548478|gb|GG730299.1| GENE 1752 1883489 - 1884280 948 263 aa, chain + ## HITS:1 COG:ssuC KEGG:ns NR:ns ## COG: ssuC COG0600 # Protein_GI_number: 16128901 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1 263 16 278 278 404 92.0 1e-113 MTTPKNRWLLRLAPWFLPLGLVAIWQIASSMGWLSTRILPSPEGVVEAFWTLSASGELWQ HLAISSWRALVGFSIGGSIGLTLGLISGLSRWGERLLDTSVQMLRNVPHLALIPLVILWF GIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGFSLFIHVILPGALPS IMVGVRFALGLMWLTLIVAETISANAGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV SAQLLERVWLRWNPAYHVKEATV >gi|283548478|gb|GG730299.1| GENE 1753 1884277 - 1885044 268 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 26 211 20 219 223 107 37 2e-21 MNTARLNQGTPLLLNAVTKKYAANTVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGL ESPSSGALLAGTTPLADIQDDTRMMFQDARLLPWKTVIDNVGLGLKGQWRDAARNALAAV GLENRALEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ DHGFTVLLVTHDVSEAVAMADRVLLIEDGKIGLDLTVDIQRPRRLGSVRLAELEAEVLNR VMKRGENEVQLRKQG >gi|283548478|gb|GG730299.1| GENE 1754 1885116 - 1887728 3087 870 aa, chain - ## HITS:1 COG:ECs1015 KEGG:ns NR:ns ## COG: ECs1015 COG0308 # Protein_GI_number: 15830269 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase N # Organism: Escherichia coli O157:H7 # 1 870 1 870 870 1682 94.0 0 MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAEKTVVTAVSQAVRHGASSAPLRLDGEDLT LVSIHVNDEPWTEYKEEEGVLVISQLPERFTLRIVNEISPAANTALEGLYKSGDALCTQC EAEGFRHITWYLDRPDVLARFTTKIIADKTQYPFLLSNGNRVAQGELENGRHWVQWQDPF PKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEER FGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYF HNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRISNVRTMRGLQFAEDASPM AHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEANFQKGMQLYFERHDGSAATCDD FVQAMEDASNVDLSHFRRWYSQSGTPILTVRDDYNPSTEQYTLTISQRTPATPDQAEKHP LHIPFALELYDNEGKAIPLQKGGHPVNSVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPV KLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPAHVADAFR AILLDEKIDPALAAEILTLPSVNEMAELFDIIDPVAITEVREALTRTLATELADEFLAIY NANHLDEYRVEHADIGKRTLRNACLRFLAFGETHLADTLVSKQYREANNMTDALAALSAA VAAQLPCRDALMQEYDDKWHHDGLVMDKWFILQSTSPARNVLETVRGLLKHRSFSMSNPN RIRSLIGAFAGSNPAAFHAEDGSGYQFLVDMLTELNSRNPQVASRLIEPLIRLKRYDAKR QAKMRAALEQLKGLENLSGDLFEKITKALA >gi|283548478|gb|GG730299.1| GENE 1755 1888058 - 1889197 1103 379 aa, chain + ## HITS:1 COG:STM1004 KEGG:ns NR:ns ## COG: STM1004 COG1488 # Protein_GI_number: 16764364 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Salmonella typhimurium LT2 # 1 379 22 400 400 735 91.0 0 MQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVNAMQHLRLQEDEYQWLSGLPFFK ADYLAWLRDFRYKPEQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHRYRSPES GVPQALNELESKLVEFSALTKNVDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGT SNYDLARRLSLTPMGTQAHEWFQAHQQISPELATSQRVALAAWLNEYPDQLGIALTDCIT MDAFLRDFGVEFATRYQGLRHDSGDPVEWGEKAIAHYEKLGIDPQSKKLVFSDNLDLNKA VELYRHFSSRVQLSFGIGTRLTCNIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDK AFVRALRKAFDLPHIKKAS >gi|283548478|gb|GG730299.1| GENE 1756 1889363 - 1890763 1594 466 aa, chain + ## HITS:1 COG:asnS KEGG:ns NR:ns ## COG: asnS COG0017 # Protein_GI_number: 16128897 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 466 1 466 466 931 95.0 0 MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPN YNQDVLRLTTGCSVIVTGKVVASPGQGQSFEIQATEVEVTGWVEDPDTYPMAAKRHSIEY LREVAHMRPRTNMIGAVARVRHTLAQALHRFFHEQGFFWVSTPLITASDTEGAGEMFRVS TLDLENLPRNDQGKVDFDKDFFGKEAFLTVSGQLNGETYACALSKIYTFGPTFRAENSNT SRHLAEFWMLEPEVAFANLDDVAGLAEAMLKYAFKAVLAERADDMKFFAERVDKDAISRL ERFIDADFAQVDYTDAVSILEKCGKQFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYP KDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMLEMGLNKEDYWWY RDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF >gi|283548478|gb|GG730299.1| GENE 1757 1891525 - 1892598 1398 357 aa, chain + ## HITS:1 COG:ompF KEGG:ns NR:ns ## COG: ompF COG3203 # Protein_GI_number: 16128896 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 357 1 362 362 533 84.0 1e-151 MMKRNILAVVIPALLVAGAANAAEVYNKDGNKVDIYGKAVGLHYFSKHNGENAYAGDGDQ TYARLGFKGETQINDQLTGYGQWEYNFAGNNAEGSNAQDGNKTRLAFAGLKFGDAGSFDY GRNYGVVYDALGYTDMLPEFGGDTAASDQFFSQRNGGLATYRNSNFFGLVEGLNFAVQYL GKNERDDVRRSNGDGVGGSISYEFDGFGIVGAYGAADRTDAQQNPALRGHGDKAEQWATG VKYDANNIYLAANYSETHNATRIANGYANKTEDVLLVAQYQFDFGLRPSLAYTKSKGKDI EGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF >gi|283548478|gb|GG730299.1| GENE 1758 1892782 - 1893972 1092 396 aa, chain + ## HITS:1 COG:aspC KEGG:ns NR:ns ## COG: aspC COG1448 # Protein_GI_number: 16128895 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 396 1 396 396 783 95.0 0 MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTPVLTSVKKAEQYILENE TTKNYLGIDGIPEFGRCTQELLFGKESSLITDKRARTAQTPGGTGALRVAADFLAKNTSA KRVWVSNPSWPNHKSVFNSAGLEVREYNYYDAANHSLDFDALLASLNEAQAGDVVLFHGC CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAALHKELIV ASSYSKNFGLYNERVGACTLVAADAESVDRAFSQMKSAIRANYSNPPAHGASVVATILSN DALRAIWEQELTDMRQRIQRMRLLFVNTLQEKGASRDFSFIIKQNGMFSFSGLTKEQVLR LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL >gi|283548478|gb|GG730299.1| GENE 1759 1894023 - 1894670 756 215 aa, chain - ## HITS:1 COG:STM0997 KEGG:ns NR:ns ## COG: STM0997 COG0491 # Protein_GI_number: 16764357 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Salmonella typhimurium LT2 # 1 215 1 215 215 429 94.0 1e-120 MNYRIIPVTAFAQNCSLIWCEQTRLAALVDPGGDAEKIKQEVEASGLTLMQILLTHGHLD HVGAAAELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLGDCEPLTPDRWLNDGDRVSVG NVSLQVLHCPGHTPGHVVFFDEQSKLLISGDVIFKGGVGRSDFPRGDHSQLIDAIKRKLL PLGDDVTFIPGHGPLSTLGNERLHNPFLQDEMPVW >gi|283548478|gb|GG730299.1| GENE 1760 1894699 - 1895247 435 182 aa, chain - ## HITS:1 COG:ECs1009 KEGG:ns NR:ns ## COG: ECs1009 COG3108 # Protein_GI_number: 15830263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 182 1 182 182 354 96.0 4e-98 MDKFDANRRKLLALGGIALGAAILPTPAFATLSTPRPRILTLNNLHTGESIKAEFFDGRG YIQDELAKLNHFFRDFRANKVKSIDPGLFDQLFRLQGLLGTRKPVQLISGYRSIDTNNEL RARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRAGGVGYYPSSNFVHIDTGPAR HW >gi|283548478|gb|GG730299.1| GENE 1761 1895425 - 1897176 1426 583 aa, chain - ## HITS:1 COG:STM0995 KEGG:ns NR:ns ## COG: STM0995 COG2989 # Protein_GI_number: 16764355 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 583 1 613 613 981 81.0 0 MLLNKMCGRRLSAISLCLAVTFAPLFNAQADEPEMIPGDSSAAVSEQPTALSQPQVQASA TAIMAGIQPLPEGMSVDKARAELQSQLPAGFTPVYMSQLELLYAARDMKPMWENRDAVKA FQQQLAEVAIAGFQPQFTTWVALLTDPAVTGQARDIVLSDALMGYLHFIANIPVKGNHWL YSNKPYVLATPPISVINQWQVALDNGQLTSFIAGLAPQHPQYAAMHESLLKLVSDTRPWP QLTSTSTLRPGEWSNDIPALREILRRTGMLESVVSTAAKEGRSAYGSELVEAVKRFQTWQ GLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPGDLSTGIMVNIPAYSLVYYQNG NQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGY TVMRGWNSKETIDPWQVDWATITASNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTP NHNLFQKDTRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPV NLYYLTAFVGADGRTQYRTDIYNYDLTARSSAQIVAKAEQLIR >gi|283548478|gb|GG730299.1| GENE 1762 1897437 - 1901897 5561 1486 aa, chain - ## HITS:1 COG:mukB KEGG:ns NR:ns ## COG: mukB COG3096 # Protein_GI_number: 16128891 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1 1486 1 1486 1486 2414 94.0 0 MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF RNTTEAGATSGSRDKGLHGKLKAGVCYSMLDVLNSRHQRVVVGVRLQQVAGRDRKVDIKP FAIQGLPMSVQPTQLVTETLNERQARVLSLPELKEKLDEIEGVQFKQFNSITDYHSLMFD LGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR ENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRIHLDKALEYRRELHTSRK QLAAEQYKHVDMARELGEHNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYEADLEEL QVRLEEQNEVVAEAVDRQDENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYTQAI QALSRAKDLCHLPDLTADSAAEWLETFQAKEQEATEKLLTLEQKMSVAQTAHSQFEQAYQ LVAAINGPLARGEAWSVARELLREGVEQRHLAEQVQPLRMRLSELEQRLREQQDAERLLA EFCKRQGKQFDIDELEALHQELEARIAALSDSVSSASEQRMTLRQEQEQLQSRIQHLMKR APVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEI ERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSLI TEQLEGLTDCPEDLYFIEGDPQSFDDSVFSVDELENAVVVKTAERQWRYSRFPTVPIFGR AARESRIETLHAEREGLSERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEADPEAEIRQ LNSRRVELERALTNHENDNQQSRMQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIRE RLDEAQEAARFVQQHGNQLAKLEPIVSVLQNDPEQFEQLKEDYAYSQQMQRDARQQAFAL TEVVQRRAHFSYSDSAEMLSGNSDLNEKLRARLEQAEAERTRAREALRSHAAQLSQYNQV LASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRARRNQLEK ALTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAY LSGDELRSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQ DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQ GLQSVSFGQVNSVRLNVNVRETHATLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM VVQSWEDEGRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPEPLPGTEDASSQAS >gi|283548478|gb|GG730299.1| GENE 1763 1901897 - 1902601 746 234 aa, chain - ## HITS:1 COG:STM0993 KEGG:ns NR:ns ## COG: STM0993 COG3095 # Protein_GI_number: 16764353 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Salmonella typhimurium LT2 # 1 234 1 234 234 431 96.0 1e-121 MSLTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNHAFLMDFQEYFEEFYSR YNVELIRAPEGFFYLRPRSTTIIPRSVLSELDMMVGKILCYLYLSPERLANEGIFTQQEL YDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRI TESVFRFGADVRSGDDPREAQRRLIRDGEAMPVENRLQLNDEPEENQPDSGEEE >gi|283548478|gb|GG730299.1| GENE 1764 1902582 - 1903904 1543 440 aa, chain - ## HITS:1 COG:mukF KEGG:ns NR:ns ## COG: mukF COG3006 # Protein_GI_number: 16128889 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Uncharacterized protein involved in chromosome partitioning # Organism: Escherichia coli K12 # 1 440 1 440 440 819 97.0 0 MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVS DAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREF STLRLSMQLSIVAGELKRAADAAAEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRIMDE QQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDAT MAHDDLHFVDKLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQR LRQSVQTYFDDPWALTYANADRLLDMRDEEMVLRDEEVTGELPADLEYEEFNEIREQLAA IIEEQLAIYKSRQTPLDLGLVVREYLAQYPRARHFDVARIVIDQAVRLGVAQADFTGLPA KWQPINDYGAKVQAHVIDKY >gi|283548478|gb|GG730299.1| GENE 1765 1903897 - 1904700 615 267 aa, chain - ## HITS:1 COG:STM0991 KEGG:ns NR:ns ## COG: STM0991 COG0500 # Protein_GI_number: 16764351 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 267 1 267 267 496 88.0 1e-140 MRDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRLLATLGEQKLHILDAGGGEGQTAI KMAERGHFVTLCDLSGEMIARAQQAAEAKGVSGNMHFIQCAAQDVTAHLETPVDLILFHA VLEWVTDPVSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQVGMPKRKKRTL SPDYPRDPEQVYQWLEEIGWQITGKTGVRVFHDYLRDKHKQHDDYEMLLELETRYCRQEP YISLGRYIHVTAIKSPARAADARIIYE >gi|283548478|gb|GG730299.1| GENE 1766 1904836 - 1905600 865 254 aa, chain + ## HITS:1 COG:STM0990 KEGG:ns NR:ns ## COG: STM0990 COG1434 # Protein_GI_number: 16764350 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 251 1 251 258 398 88.0 1e-111 MLFTLKKVIGGMMLPLPLMLIMMGIGLALVWFSRFQKTGKVCISLSWLALLLLSLQPVAD SLLKPIEDSYPTWQDTQKVEYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRANP GSKLIFTGAAAKTNNVSTAEAGARVAESLGIPRSEIITLDKPKDTEEEAAAVKHAIGDAP FLLVTSASHLPRAMIFFQQAGLHPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRVGYE TLGRIWQWLKGAEH >gi|283548478|gb|GG730299.1| GENE 1767 1905694 - 1906587 837 297 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B0995 NR:ns ## KEGG: SeAg_B0995 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Agona # Pathway: not_defined # 1 297 1 297 297 556 93.0 1e-157 MEQLRAELSHLLGEKLSRIECVNEKVDTALWALYDSQGNPMPLMARSFTTPGMAQQLAWK TSMLARSGTVRMPVIYGVLTHEEHPGPDVLLLERLRGVPVEAPARTPERWEHLKDQIVEG LLSWHRQDSRGCVGAVDNTQENIWPSWYRQRVEVLWTTLNQFQNTGLTMQDKRILFRTRE CLPDLFAGFNDNCVLIHGNFSLRSMLKDARSDQLLAMVGPGLMLWAPREYELFRLMDNAL AESLLWQYLQRAPVAESFIWRRWLYVLWDEVTQLVNTGRFNRSNFDLATKSLLPWLA >gi|283548478|gb|GG730299.1| GENE 1768 1906751 - 1907497 962 248 aa, chain - ## HITS:1 COG:STM0988 KEGG:ns NR:ns ## COG: STM0988 COG1212 # Protein_GI_number: 16764348 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Salmonella typhimurium LT2 # 1 248 1 248 248 469 95.0 1e-132 MSFVVIIPARYASTRLPGKPLLDINGRPMIVHVLERARESGAERIIVATDHEDVARAVEA VGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQ VGMATLAAPIHSAEEAFNPNAVKVVLDSEGYALYFSRATIPWDRDRFAKSLETVGDTFLR HLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAKEVPGTGVDTAEDL ERVRAEMR >gi|283548478|gb|GG730299.1| GENE 1769 1907494 - 1907676 187 60 aa, chain - ## HITS:1 COG:ECs1000 KEGG:ns NR:ns ## COG: ECs1000 COG2835 # Protein_GI_number: 15830254 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 60 1 60 60 117 98.0 5e-27 MDHRLLEIIACPVCNGKLWFNQEKQELICKLDNLAFPLRDGIPVLLETEARVLTADESKS >gi|283548478|gb|GG730299.1| GENE 1770 1907728 - 1908960 895 410 aa, chain - ## HITS:1 COG:ycaQ KEGG:ns NR:ns ## COG: ycaQ COG3214 # Protein_GI_number: 16128883 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 408 1 408 410 684 84.0 0 MSLPHLSLTDARHLHLAAQGLLKKTRRRATPADILATISRMSLLQIDTINVVARSPYLVL FSRLGDYSPQWLDDSLRQGELMEYWAHEACFMPRSDFMLIRHRMLAPEKMGWKYKAAWME EHAHEIERLLQHIHHNGPVRSADFEHPRQGTSGWWEWKPHKRHLEGLFTAGKVMVVERRN FQRVYDLTHRVMPHWDDERDRLSQEEAEIAMLDNSARSLGIFREQWLADYYRLKRPALKN WCDVRKEQQQILPVEVEGLGTLWLHSDLQPLLEQALAGKLTATHSAVLSPFDPVVWDRKR AEQLFDFSYRLECYTPAEKRQYGYFVLPLLHRGQLVGRMDAKMHRKTGVLDVISLWLQDG VKPGATLQKGLFQAIDDFARWQQATRVTLGRCPEGLFAGARHGWEIAPAR >gi|283548478|gb|GG730299.1| GENE 1771 1909002 - 1909979 490 325 aa, chain - ## HITS:1 COG:ECs0998 KEGG:ns NR:ns ## COG: ECs0998 COG1663 # Protein_GI_number: 15830252 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Escherichia coli O157:H7 # 1 323 1 324 328 536 83.0 1e-152 MIARIWSGESPLWRLLLPLSWLYGLVSGGIRLCYKLGLKRAWRAPVPVVVVGNLTAGGNG KTPVVIWLVERLQQRGIRVGVVSRGYGGKAAAYPLLLNADTTTAEAGDEPVLIYQRTGVP VAVSPDRADAVKSILAHHDVQIIVTDDGLQHYRLARDIEIVVIDGERRFGNGWWLPAGPM RERAGRLKSVDATIVNGGSPLPGEIPMRLEPGLAVNLRTGERRNVAQLTNIVAMAGIGHP PRFFATLEACGARPEKCIALADHQSLAYSDVSAFSDAGQTLVMTEKDAVKCRAFADANWW YLPVDAHLSGDRPDALLDSLISLIR >gi|283548478|gb|GG730299.1| GENE 1772 1909976 - 1911724 280 582 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 344 569 132 355 398 112 35 8e-23 MHNDKDLSTWQTFRRLWPTIAPFKSGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD RSVLLWMPLVVIGLMIVRGLTSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVLAPIVSV AIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMENLTAGTITVVFSSMIALMRPLKS LTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDLEFRNVTFTYPGREVPALR NINLNIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGQILMDGHDLREYTLASLRDQVA LVSQNVHLFNDTVANNIAYARTDLYSREQIEKAAQMAYAMDFINKMDNGLDTVIGENGVL LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS TIEQADEIVVVEDGLIVERGTHSELIEQRGVYAQLHKMQFGQ >gi|283548478|gb|GG730299.1| GENE 1773 1911761 - 1914025 933 754 aa, chain - ## HITS:1 COG:ycaI_1 KEGG:ns NR:ns ## COG: ycaI_1 COG0658 # Protein_GI_number: 16128880 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Escherichia coli K12 # 1 428 27 454 454 583 71.0 1e-166 MKITTVSTCALCGIFPLALLPVLPDMLRIGVVFCLACLLCLFPHKYMRFAGLTLLFFLWG IMAAKDALWAGNTLPAKNQRAIVRITGTDNMTTHYGQITHLEGRRIFPAQGIVLYGQYLP GDVCAGQTWAMTLKVRAVHGQLNEGGFDSQRYALAQHQPLTGRFLQASVITPQCSLRSRY LASLKAALADYPWQQVILGLGMGERLSVSQEVKTIMRDTGTAHLMAISGLHIAFAALLAG GLIRGGQFFMPTKWICWQVPLIGGIVCATFYAWLTGLQPPALRTIIALMVWGGLKISGRQ WSGWSVWICCLAAIVVVDPVAILSQSLWLSAFAVAALIFWYQWIPLPDWPRARSGRMLLA LTHLQLGITVLLLPVQISMFHGISLTSFVANLFAVPLVTFISVPLILAGMLVHLTGLDVL ESGLWYLADRSLAVLFWGLNALPQGWINIDARWQWLAFLPGLLLVAYRLNVWRTIPAVCI AVFLILSAPLWRAPRTDAWQVHMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSAQQLII PWLRWHNLEPEGVILSHEHMDHRGGLRSLQQAWPYLWIRSPLGWKNHLPCFRGERWQWQG LTFSAHWPLRANTAQGNNRSCVVKVDDGHQSILLTGDIESPAEQKMLSHYWSHLQATVMQ VPHHGSNTSSSLALIQRVGGQAALASASRYNAWRLPSSKVKRRYRQQDYQWLDTPHQGQI TLDFYPQTWRIRGMRDQILPRWYHQWFGVSEDNG >gi|283548478|gb|GG730299.1| GENE 1774 1914232 - 1914516 331 94 aa, chain - ## HITS:1 COG:STM0982 KEGG:ns NR:ns ## COG: STM0982 COG0776 # Protein_GI_number: 16764342 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Salmonella typhimurium LT2 # 1 94 1 94 94 172 97.0 2e-43 MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT GRNPKTGDKVDLEGKYVPHFKPGKELRDRANIYG >gi|283548478|gb|GG730299.1| GENE 1775 1914801 - 1916474 2785 557 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157146403|ref|YP_001453721.1| 30S ribosomal protein S1 [Citrobacter koseri ATCC BAA-895] # 1 557 1 557 557 1077 98 0.0 MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGEL EIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEEAATVTGVINGKVKGGF TVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSA ERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDE ITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGV EGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKNNPWQQFAET HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVL QVDAERERISLGVKQLAEDPFNNWVALNKKGAIVNGKVTAVDAKGATVELADGVEGYLRA SEASRDRVEDATLVLSVGDDVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDA NFSNNAMAEAFKAAKGE >gi|283548478|gb|GG730299.1| GENE 1776 1916588 - 1917271 256 227 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 7 223 36 286 863 103 29 5e-20 MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVTSEDAL VPLASHLDVRFISTDGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAF REAPGLIADGRDMGTVVFPDAPVKIFLDASSHERAHRRMLQLQEKGFSVNFERLLAEIEE RDYRDRNRAVAPLVPAADALVLDSTRLSIEQVIEKALQYARQKLALA >gi|283548478|gb|GG730299.1| GENE 1777 1917443 - 1918204 739 253 aa, chain - ## HITS:1 COG:STM0979 KEGG:ns NR:ns ## COG: STM0979 COG0501 # Protein_GI_number: 16764339 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Salmonella typhimurium LT2 # 1 253 1 253 253 400 91.0 1e-111 MKHKSLFLALAVSAILLAGCKNGVNGDLVASSGMAAYKAATLSDADVKALSNSSCKQVDS ENQLAGAKSKYTKRLNKIAKALGNNIDGTPVNYKVYITSDINAWAMANGCVRVYSGLMDL MTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAISATSGVASQLSQSQLGDLAEG VINSAFSRSQESDADDFSYDLLKKRGINRQGLVTAFDKFATMDAGHAKSLMDSHPASDER AQHMRERIAADKK >gi|283548478|gb|GG730299.1| GENE 1778 1918343 - 1919626 1535 427 aa, chain - ## HITS:1 COG:ECs0991 KEGG:ns NR:ns ## COG: ECs0991 COG0128 # Protein_GI_number: 15830245 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 427 1 427 427 774 91.0 0 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALANGTTVLTNLLDSDDVRHMLNALNAL GIRYTLSADRTRCEIIGNGGALHAEGAVELFLGNAGTAMRPLAAALCLGSNDIVLTGEPR MKERPIGHLVDALRQGGANIEYLEQENYPPLRLRGGFTGGQVEVDGSVSSQFLTALLMTA PLAPQDTTIAIKGELVSKPYIDITLNLMKTFGVEIENQNYQRFVVQGQQQYQSPGAYLVE GDASSASYFLAAGAIKGGTVKVTGIGRYSMQGDIRFADVLEKMGATITWGDDFIACTHGE LNAVDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVE EGHDFIRITPPAKLQFADIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQL ARISTPA >gi|283548478|gb|GG730299.1| GENE 1779 1919696 - 1920748 1048 350 aa, chain - ## HITS:1 COG:STM0977 KEGG:ns NR:ns ## COG: STM0977 COG1932 # Protein_GI_number: 16764337 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Salmonella typhimurium LT2 # 1 350 13 362 362 683 91.0 0 MLPAEVLKLAQQDLRDWNGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLSIPSNYKVLFC HGGGRGQFAGIPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVIDAKVTVDGLRAVK PMSEWQLSDNAAYLHYCPNETIDGIAIDETPNFASNVVVTADLSSTILSAPLDVSRYGVI YAGAQKNIGPAGLTIVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLV FKWLKEQGGVNAMNKINQQKAELLYGVIDNSDFYRNDVAKSNRSRMNVPFQLADSALDKL FLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVDFERRRG >gi|283548478|gb|GG730299.1| GENE 1780 1920998 - 1921690 630 230 aa, chain - ## HITS:1 COG:ycaP KEGG:ns NR:ns ## COG: ycaP COG2323 # Protein_GI_number: 16128873 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 230 1 230 230 412 86.0 1e-115 MKAFDLQRMALDKMPMEFLGEVALRSLYTFILVFLFLKLTGRRGVRQMSLFEVLIILTLG SAAGDVAFYDDVPMIPVLVVFITLALLYRLVMWLMAHSEKLEDLLEGKPVVIIEDGELSW SKLNRANMTEFEFFMELRLNGVEQLGQVKLAILETNGQISVYFFADEDVKPGLSILPKHC TQRFKVMPEAGDYACVRCSEVVQMSAGDHQLCPRCANPEWSKASRAKRVT >gi|283548478|gb|GG730299.1| GENE 1781 1921826 - 1923586 2181 586 aa, chain + ## HITS:1 COG:ECs0988 KEGG:ns NR:ns ## COG: ECs0988 COG1944 # Protein_GI_number: 15830242 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 586 4 589 589 1122 93.0 0 MTQTFIPGKDAALEDSIALFQQKLLDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNG KGATKKAALASALGEYFERLSTNYFFADFWLGDTIANGPFVHYPNEKWFPLTEDDDVPEG LLDARLRAFYDPENELTGSMLIDLQSGNEERGVCGLPFTRQSDNQTVYIPMNIIGNLYVS NGMSAGNTPNEARVQGLSEVFERYVKNRIIAESISLPEIPAEVMARYPAVVESIAKLEAE GFPIFAYDGSLGGKYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDL DVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLM AIFKQEDKDVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNAMGTHLRETLLSLPGS EWDKEDYLNLIAQLDEEGFDDFTRVRELLGLATGADNGWYTLRIGELKVMLALAGGDLEQ ALIWTEWTMEFNASVFSAERANYYRCLQTLLLLSLEEDRQPLQYLNAFVRMYGADAVEAA SAALSGEAPFYGLQRVDGDLQAFPAHQSLLKAYEKLQRAKAAHWSK >gi|283548478|gb|GG730299.1| GENE 1782 1923991 - 1924848 746 285 aa, chain + ## HITS:1 COG:ECs0987 KEGG:ns NR:ns ## COG: ECs0987 COG2116 # Protein_GI_number: 15830241 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Escherichia coli O157:H7 # 1 285 1 285 285 517 96.0 1e-146 MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTG TMPFGMAKLIGGICFSLGLILCVICGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYVG NLIGALIFVLLMWLSGEYMTANGAWGLNVLQTADHKVHHTFVEAVSLGILANLMVCLAVW MSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFATPEFWTAVGSSPE NFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRGNDHH >gi|283548478|gb|GG730299.1| GENE 1783 1924908 - 1927190 2544 760 aa, chain + ## HITS:1 COG:STM0973 KEGG:ns NR:ns ## COG: STM0973 COG1882 # Protein_GI_number: 16764333 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Salmonella typhimurium LT2 # 1 760 1 760 760 1551 98.0 0 MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATDATTKLWDSVME GVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQTEAPLKRAIIPFGGIKMVE GSCKAYNRELDPMLKKIFTEYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIG DYRRVALYGIDFLMKDKYAQFVSLQSDLENGVNLEATIRLREEIAEQHRALGQIKEMAAK YGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRVSTFLDAYIERDIKAGKITEQ DAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGVDGRTLVTKNSFRFLNT LYTMGPSPEPNITVLWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACC VSPMVVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNFDEVMDRM DHFMDWLAKQYVTALNVIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAI KYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDSRVDDMAVDLVERFMKKIQKLTTYRNAIP TQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYA KDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAM EHPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM >gi|283548478|gb|GG730299.1| GENE 1784 1927376 - 1928116 950 246 aa, chain + ## HITS:1 COG:ECs0985 KEGG:ns NR:ns ## COG: ECs0985 COG1180 # Protein_GI_number: 15830239 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 510 97.0 1e-144 MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVDELMKEV VTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDEL LEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLSNKDIKVWIRYVVVPGWSDDDDS AHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQY GHKVMY >gi|283548478|gb|GG730299.1| GENE 1785 1928258 - 1931389 2451 1043 aa, chain - ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 49 923 81 929 1027 674 57.0 0 MSATVRAAELSQNTHSADKDNINSPYSAQMTQAATALSSGNAAGAGASMASGYAGDSVEK WLSQFGTARVQLNVDDKGNWDDSAIDFLAPLYDSQKAMLFTQLGLRAPDDRVTGNFGLGV RTFYTDNWMFGGNVFFDDDFTGDNRRVGFGAEAWTNNLKLSANTYLGTTNWHSSRDFDDY YEKPADGFDVRAEGYLPAYPQLGAKLMYEQYYGDKVALFDKDDLQSNPSAVTVGVSYTPV PLITAAVDYRRGQDSMDETHFGVNFRYNFGQSLSSQLSSSEVQNLRSLAGSRYDLVERNN EIVLQYKEKKQNNAVADMLLTTVKDNSPADGVTANTVTVRATTSDGTPVRNTVISWSIVG GAQQQAKAAAGSAADDAALSAGSSVTDSNGNASVNITSKTAGQVAVQATSGDISRTATTT FVQSVGSLDLVLTQNNSPADGSSQNAGKVTVKDTNGNVMSGVAISWGVNNGAKVVASDVQ SNAQGEATIHYTNTKGGAVTLTASAAGKTASVNSAFTSQSEVSAVSVTTTTNNAPANNSA TNAAQALVTDGNGQPMANTSVTWSISGSSTATLSSAATVTTNAQGVANVTFKDSVAETVT IVANAGGRSGSSSAIFTQTAATNILVTVQQNNATADGTSANTVVAKVTDSSGQAVANAVV TWSVGGSAKATSPVTVNTNASGEATLSVSDSVAESVTVSASANGAQGQATVTFVPAVSSV FVAVTANNALADGSSVNTFRATVTSPSGQPVANTSITWSLSSSTANGTSSLNATTDASGN AVLSVTDTVAETVTATAKAGNIQGQATATFNPASVEVSAVTVTVPTNNQMADGSATNQAQ ALVTDANNQPLANVQVTWSITGSATVNATTPLSVTTDSNGVATLRFTDTVGENVTVTAMA GGKQGQATATFVSAAFGPLVIELEHGTGTSAINVATVSDGLELTVDAYPGMAEGDQITAS FKVTGDVNPDSPGGTILPDITLPVHTVTASEVGQPIVLTFDGSGMLGFQGETTPLTGTGT AIVVKPSTQQQISDSTSRVFDTW >gi|283548478|gb|GG730299.1| GENE 1786 1932439 - 1933587 1218 382 aa, chain - ## HITS:1 COG:ECs0983 KEGG:ns NR:ns ## COG: ECs0983 COG0477 # Protein_GI_number: 15830237 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 382 1 382 382 585 88.0 1e-167 MSIYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAHENLPTWQVGMVSSSYFTGNLVGTLL TGYLIKRLGFNRSYYIASFIFAAGCVGLGIMVGFWSWLTWRFIAGVGCAMIWVVVESALM CSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNVLPWVTGTILAGVLPLLFARI ANQQGDEQHSTPIVSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGVSNASIGFW MAVLVSAGILGQWPIGRLADKLGRLLVLRVQVFVVIVGSIAMLNQAAMAPALFMLGAAGF TLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDSLLFIMIASV SFIYLLMLLRKTGHTPNSIAHI >gi|283548478|gb|GG730299.1| GENE 1787 1934013 - 1934876 897 287 aa, chain - ## HITS:1 COG:STM0966 KEGG:ns NR:ns ## COG: STM0966 COG3302 # Protein_GI_number: 16764327 # Func_class: R General function prediction only # Function: DMSO reductase anchor subunit # Organism: Salmonella typhimurium LT2 # 1 287 1 287 287 423 91.0 1e-118 MGSGWHEWPLMIFTVFGQCVVGGFIVLALALMKGELRPESQQRVIACMFGLWVLMGIGFI ASMLHLGSPMRAFNSLNRVGASALSNEIASGSVFFAIGGIGWLVAVLKKMPLALRNVWLV ITMVLGVVFVWMMVRVYNTIDTVPTWYSVWTPLGFFLTLFMGGPLLGYLLLRIAGVDGWA MRLLPAISVLALVVSAIMSVMQGAELATIHSSIQQASALVPDYGSLMAWRIVALALALCC WIVPQVKGYQPAVPLLSVAFILLLVGELIGRGVFYGLHMTVGMAVAS >gi|283548478|gb|GG730299.1| GENE 1788 1934878 - 1935495 556 205 aa, chain - ## HITS:1 COG:dmsB KEGG:ns NR:ns ## COG: dmsB COG0437 # Protein_GI_number: 16128862 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 205 1 205 205 396 94.0 1e-110 MTTQYGFFIDSSRCTGCKTCELACKDFKNLTPDVSFRRIYEYAGGDWQEDNGVWHQNVFA YYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEK GHMTKCDGCHDRVAEGKKPICVESCPLRALDFGPIEELRKKHGTLAAVAPLPGAHFTKPS IVIKPNANSRPTGDTTGYLANPKEV >gi|283548478|gb|GG730299.1| GENE 1789 1935506 - 1937950 2471 814 aa, chain - ## HITS:1 COG:STM0964 KEGG:ns NR:ns ## COG: STM0964 COG0243 # Protein_GI_number: 16764325 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 813 1 813 814 1617 95.0 0 MKTKIPDAVLAAEVSRRGLVKTTAIGGLAVASSAFTLPFTRIANAAEALNPAPRNEKVIW SACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRL KYPMKRVGKRGEGKFERISWDEAYEIIASNMQRLIKDYGNESIYLNYGTGTLGGTLTRSW PPGKTLVARLMNCCGGYLNHYGDYSSAQIAAGLNYTYGGWADGNSPSDIENSKLVVLFGN NPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGL AYVLIAENMVDQPFLDKYCVGYDEKTLPAGAPKNGHYKAYILGQGKDGTAKTPEWAAQIT GIPADRIIKLAREIGSAKPAYISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGA REGSYDLPFERMPTLENPVETSISMFMWTDAIERGPEMTALRDGVRGKDKLEVPIKMIWN YAGNCLINQHSDINRTHEILQDEKKCEMIVVIDCHMTSSAKYADILLPDCTASEQMDFAL DASCGNMSYVIFTDRAIKPRFECKTIYQMTSELAKRLGVEQQFTEGRTQEEWMRHLYEQS RKAIPELPGFEEFRKQGIFKQRDPEGHHVAYKAFREDPKANPLTTPSGKIEIYSQALAEI AATWELPEGDVIDPLPIYTPGFESLGDPLVEKFPLQLTGFHYKSRVHSTYGNVDVLKASC RQEMWINPLDAQRRGINNGDKVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKR VDQGGCINVLTTQRPSPLAKGNPSHTNLVQVEKV >gi|283548478|gb|GG730299.1| GENE 1790 1938158 - 1939450 1641 430 aa, chain - ## HITS:1 COG:STM0963 KEGG:ns NR:ns ## COG: STM0963 COG0172 # Protein_GI_number: 16764324 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 430 1 430 430 845 97.0 0 MLDPNLLRNEPDAVAEKLASRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQ AKARGEDIESLRLEVNKLGEELDAAKAELDTLQAEIRDIALTIPNLPADEVPVGKDENDN VEVSRWGTPREFDFEVRDHVTLGEMHTGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFM LDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEV PLTNLVRDEIIDEDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED SMEALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCS NVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIQVPEVLR PYMNGLEFIG >gi|283548478|gb|GG730299.1| GENE 1791 1939543 - 1940886 1081 447 aa, chain - ## HITS:1 COG:ECs0977 KEGG:ns NR:ns ## COG: ECs0977 COG2256 # Protein_GI_number: 15830231 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 839 96.0 0 MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG TGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMSD KARGYGDQDIVLPKETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKTELLTEI AGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS EDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADA RERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYRPTN RGLEGKIGEKLAWLAGQDQNSPIKRYR >gi|283548478|gb|GG730299.1| GENE 1792 1940897 - 1941508 755 203 aa, chain - ## HITS:1 COG:ECs0976 KEGG:ns NR:ns ## COG: ECs0976 COG2834 # Protein_GI_number: 15830230 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane lipoprotein-sorting protein # Organism: Escherichia coli O157:H7 # 1 203 2 204 204 366 94.0 1e-101 MKRIAITCALLSSFVVSSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDL WVKRPNLFNWHMTQPDESILVSDGKTLWFFNPFVEQATATWLKDATGNTPFMLIARNQAS DWQQYNIKQNGDDFVLTPKTSSGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQN GAIEPSKFTFTPPQGVTVDDQRK >gi|283548478|gb|GG730299.1| GENE 1793 1941620 - 1945558 3743 1312 aa, chain - ## HITS:1 COG:YPO1376 KEGG:ns NR:ns ## COG: YPO1376 COG1674 # Protein_GI_number: 16121656 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Yersinia pestis # 583 1312 487 1305 1305 907 66.0 0 MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSFNPSDPSWSQTAWHEPI HNLGGIPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQASDEYVDYFAVSLRIIGVL ALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPMLHSSGGTLTLLCIWAAGLTLFTG WSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYEDEEESVDAADGKPHESRRARIL RGALARRKRLAEKFTNPLGRHTDAALFSGKRMDDEDEIEYSARGVVADPNDVLFSGNRAT LPEYDELDPLLNGHSVTEPVAAAAAATTASQAWSAPVDPLLQTSPVTSTVMEQSTPAVAW QSAPGPQTGDAVIAPAPEGYPQPAQYVQPPVQQPYEPWQQPVAQENPQPEYYAPQTPEPI YAQPVAPQPQEFTAQQNWQPEPVYQPEPEPQPVYQQEPGFQQPSAFQQSVVEQPSVVEPE PVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPAEEPERVKPSMPSMPTAASI PPVESVAAAAPLAAGVKSAALGAGAAAAAPVFSLAGSGAPRPQVKEGIGPQLPRPNRVRV PTRRELASYGIKLPSQRMAEEKAREEQLDTDAYSDDEIDAMQQDELARQFAQSQQHRYGE AYQNDTSQTDDEDLDAEAELARQFASSQQQRYSGEQPAGANPFSLDDFEFSPMKTLVDDG PHEPLFTPGVMPEPAPQYQEPVAPQQHYQQPAQPVAPQQHYQQPAQPVAPQQHYQQPAQP VAPQQHYQQPAQPVTPPPQDSLIHPLLMRNGDSRPVQRPSTPLPSLDLLTPPPSEVEPID TFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSL STAAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNSSPLTVVLGKDIAGEPV VADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPH LLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAGRMGRPIPDPYW KPGDSMDVQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQ RPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSAPNSTIPVRV HGAFVRDEEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVT QKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFE >gi|283548478|gb|GG730299.1| GENE 1794 1945693 - 1946187 493 164 aa, chain - ## HITS:1 COG:STM0959 KEGG:ns NR:ns ## COG: STM0959 COG1522 # Protein_GI_number: 16764320 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 164 1 164 164 311 99.0 2e-85 MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG YTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTR VPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR >gi|283548478|gb|GG730299.1| GENE 1795 1946734 - 1947702 717 322 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 10 317 5 306 306 280 48 2e-73 MGATKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPHDL TGPLLMERMHEHAIKFETEIIFDHISKVDLQNRPFRLTGDSGEYTCDALIVATGASARYL GLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDS FRAEKILIKRLMDKVENGNIVLHTHRTLEEVTGDQMGVTGLRLRDTQNPDNVESLDVAGL FVAIGHSPNTAIFDGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSA GTGCMAALDAERYLDGLADACK >gi|283548478|gb|GG730299.1| GENE 1796 1947817 - 1949583 1550 588 aa, chain + ## HITS:1 COG:STM0957 KEGG:ns NR:ns ## COG: STM0957 COG4988 # Protein_GI_number: 16764318 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Salmonella typhimurium LT2 # 1 588 1 588 588 1001 91.0 0 MNKTRQKELTRWLKQQSVISQRWLNISRLLGFVSGLLIVAQAWLMARILDHMIMGNIPRE ALLLPFVVLVLIFILRAWVVWLRERVGFHAGQNIRFEIRRQVLDRLQQAGPAWIQGKPAG SWATLILEQIDDMHDYYARYLPQMALAVCVPLLIVAAVFPSNWVAALILLGTAPLIPLFM AMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAETESIRAASQDFRQRTM EVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLASGFLALILAPEF FQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPERGDIELATKDAVSIEAQDLIITSP EGKVLAGPLNFTLAAGQRAVLVGRSSSGKSSLLNVLSGFLSYQGSLRINGFELRDLAPDS WRKQLSWVGQNPQLPAATLRENVLLARPDASEEQLQAALDSAWVSEFLPLLPQGVDTPVG DQAARLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALSAASRRQTTLMV THQLEDLADWDAIWVMQDGQIVEQGSWAELSAANSAFATLLAHRQEDI >gi|283548478|gb|GG730299.1| GENE 1797 1949584 - 1951305 1788 573 aa, chain + ## HITS:1 COG:STM0956 KEGG:ns NR:ns ## COG: STM0956 COG4987 # Protein_GI_number: 16764317 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components # Organism: Salmonella typhimurium LT2 # 1 573 1 573 573 943 87.0 0 MRALLPYLTLYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAVVGVTGIYSFNYM LPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLSRYGQGELL NRVVADVDTLDHLYLRVLSPLVGAFVVIMVVTLGLSVLDFTLAVTLGGIMLLTLFILPPL FYQAGKRTGQSLTHLRGQYRQQLTSWLQGQAELTIFGASERYRAQMEATELQWHEAQRRQ SELTALSQAIMLLVGALAVIMMLWMASGGVGGNTQPGALIALFVFCALAAFEALAPVTGA FQHLGQVIASALRITELTEQQPEVTFPDTASPVSEQLALTLREVSFSYPGQAQKALDTLS LQAKPGEHIAILGRTGCGKSTLLQLLTRAWDPQSGDILINDRPISALNEDTLRQIISVVP QRVHLFSATLRDNLLLAAPHASDEALSAILCRVGLEKLLEDDGLNAWLGEGGRQLSGGEL RRLAIARALLHDAPLMLLDEPTEGLDATTESQMLELISDVMRNKTVLMVTHRLRGLSRFD QIIVMDNGQIIEQGNHADLLARQGRYYQFKQRL >gi|283548478|gb|GG730299.1| GENE 1798 1951350 - 1952054 398 234 aa, chain + ## HITS:1 COG:aat KEGG:ns NR:ns ## COG: aat COG2360 # Protein_GI_number: 16128852 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Leu/Phe-tRNA-protein transferase # Organism: Escherichia coli K12 # 1 233 1 233 234 429 86.0 1e-120 MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWS PDPRAILWPDKFHLSRSMKRFHKNSPYRVTLNYAFGQVIEGCANDREEGTWITHDVVDAY HRLHELGHAHSIEVWRQNELVGGMYGVAQGTLFCGESMFSRQENASKTALLVFCAEFIRQ GGKLIDCQVLNSHTASLGAIETPRREYLEHLSRLRQQRLPSHFWIPRTLFSPQG >gi|283548478|gb|GG730299.1| GENE 1799 1952340 - 1952558 261 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 70 1 70 72 105 67 1e-20 MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY DLSKGRIVFRSR >gi|283548478|gb|GG730299.1| GENE 1800 1952639 - 1953550 645 303 aa, chain - ## HITS:1 COG:STM0952 KEGG:ns NR:ns ## COG: STM0952 COG0583 # Protein_GI_number: 16764313 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 303 1 303 303 489 90.0 1e-138 MTKPDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNV TEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGVVKLTCPVTLLHVHIGPMLARFMARY PDVSVQLEATNRRVDVIGEGLDVAIRVRPRPFEDSDLVMRVLADRGHRLYASPRLIERMG PVHSPAELTRWPGLSLASGKHVHRWELFGPQGARAEVHFTPRMITTDMLALREAAVAGVG VVQLPQLMVKAQLAAGELVALLDGWEPKREIIHAVFPSRRGLLPSVRALVDFLTEEYARM IED >gi|283548478|gb|GG730299.1| GENE 1801 1953659 - 1954519 862 286 aa, chain + ## HITS:1 COG:STM0951 KEGG:ns NR:ns ## COG: STM0951 COG1741 # Protein_GI_number: 16764312 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Salmonella typhimurium LT2 # 1 286 1 286 286 532 92.0 1e-151 MKQVTGVYTAPRPHWVGDGFPVRSMFSYQSHAEQLSPFLLLDYAGPHTFTPGNEKRGVGE HPHRGFETVTIVYSGEVEHRDSTGRGGIIGPGDVQWMTAGAGILHEEFHSPEFTRRGGEL EMVQLWVNLPSKDKMAVPGYQGITSDVIPTVALPDEAGSVRVIAGSYEETKGPAHTFSPL NVWDMRLQRNHQLTLSQPEGWSTALVVLKGNITVNGTTPASEAQLVVLSQQGKTLHIEAT SDAIVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI >gi|283548478|gb|GG730299.1| GENE 1802 1954536 - 1955213 808 225 aa, chain + ## HITS:1 COG:STM0950 KEGG:ns NR:ns ## COG: STM0950 COG1335 # Protein_GI_number: 16764311 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 386 95.0 1e-107 MSSPANFNGSRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPV ITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNEDFVKAVKATGRKTLIIAGTI TSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTAAVASEIQG TWNREDAAEWAEVYTKVFPAYQLLIESYSKAQEVVTNGEKLDSQR >gi|283548478|gb|GG730299.1| GENE 1803 1955916 - 1958585 2017 889 aa, chain + ## HITS:1 COG:no KEGG:ESA_00983 NR:ns ## KEGG: ESA_00983 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 81 422 4 344 541 316 57.0 4e-84 MSDSVLAGTSLILYTGKNYAGTQQSVTHGVTGELAASSASWDYASAAMSSMQVFIFSDVS TADASASYLGHAEDLLSTSVSDLTALYPSATQFPLNFLGLNPAIATLVRLVIDPEQAAPD AVASTAQVGGSTTNITTLSLQGHPGALGFVSLTEGSSVVATCPYGTYNSADGTIDWSGKM GSVALEYTGGRIVVVSTSGFPDGWDFGAPEQQADGSWTVALNGGVPAGNEIAAISASPAS IVNDGSSASVITASVVNANGLPVSGVTVNWSTTAGSLSVASSVTSANGKATTSLTDSGAA GLVTVTAAISGSSKSTQVTVTDSKAGYVLASLAADKNTLLNDGTDLVKLTATVKDGSGNL ISGVPVYWSTTLGTLNHAEQDSDTVGESHAKLTDTGDTGTASITARLDDGSSKQTTISIQ NSGAKELLIMGARSSNRAYGEYIESRLVALDKQTFAPVIADWNYDGQQEVLSATNMIDVY PGKILNISASGYASVALNVSNVIGSGGWYDENDDPGSHGAFAARKNSGDIVVWGEDTRGA IPPLAEDNYGASFLCASAGAFAAIRGNNTIFSWGNVDDGGETPADIKTQAGIIDVRSSRG TFLIRSTVSPYIQTWGRGVTTDIGQVDLTVPAYIASKSDIQRLQMTEDAACAINQAGQVY TWGDASCGGSITSDIQSLTGVTACYSSRRAFAVLFNNGMVKAWGDTAYGGDASAVSGITD IVRVCATESAFLALRRNGQIVAWGEASQGASIPTDYKNYTDIVDIKSSYGAFAALRSNGQ VICWGEKTHGGNSSDTTSFTNVIAITGTSWSFAALHKDGTVSAWGNSSYGGDTTAVKDDL VNVCAIYPNSRAFFALKTDGSFVAWGDSISGGDQTKVPSSLTGNITYLA >gi|283548478|gb|GG730299.1| GENE 1804 1959401 - 1960276 366 291 aa, chain + ## HITS:1 COG:no KEGG:Bcenmc03_4705 NR:ns ## KEGG: Bcenmc03_4705 # Name: not_defined # Def: HvnC; halovibrin # Organism: B.cenocepacia_MC0-3 # Pathway: not_defined # 25 289 42 302 324 207 44.0 5e-52 MTLPTAQGYMATFSYSDSDQVVTDVASVLTAQYNDTRRFCNTASRPAYLCSGVTLRATDS SKSEPWTPDSKNISSGGTSFSYLRKDAKYSNLAYDRPNGYILYPQDDRLANQIQIDVLCA FPIDGATDIRDDGGCGTSTRATVNNEECQLQGIFTAEQWLNLYDSGGHNHDNQCGFIVSL NPAYNQGFDVADAFMQTIDAMTLLSGESLAEQNEMRLQTWGADKTTLAKLPLQAFFYLNG SSSGLTNAQKNQQTYYSEYNIAVPIVKITLPTSSAQDAQFSYSASDQKVPM >gi|283548478|gb|GG730299.1| GENE 1805 1961408 - 1962067 386 219 aa, chain + ## HITS:1 COG:PSLT041 KEGG:ns NR:ns ## COG: PSLT041 COG0583 # Protein_GI_number: 17233493 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 171 1 171 297 68 28.0 7e-12 MTVLMSRKLKYFIVSFETRCINLAAEKLCVTRSPLTRVLYELEGMMGDKLFNRRYNQLEP TELACSLYEELKPTYDLLCGVENKFNSSNRMSALELLCDLSVPYVLYQHILIKLKTLHPG IVCRRVFVSNDEIKSLSLNPQTILLSFRKIDMPEGFTLQSEGDDSVFLLAPGHLSEEEMK DFDTMKDIILYIRKDILSSETKGFVTNALKHFLPYVKIQ >gi|283548478|gb|GG730299.1| GENE 1806 1962119 - 1962286 63 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085640|ref|ZP_06353572.2| ## NR: gi|291085640|ref|ZP_06353572.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 55 13 67 67 105 100.0 1e-21 MMLIPGWLSSFFAPPNTQKIKIPGVSIHRGLYINKKNKDRKLLKEIKDVLFLSNH >gi|283548478|gb|GG730299.1| GENE 1807 1962648 - 1963001 124 117 aa, chain - ## HITS:1 COG:no KEGG:ESA_00988 NR:ns ## KEGG: ESA_00988 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 116 1 116 116 129 57.0 4e-29 MSNKITFGELLSAFISQPIEAIKIMFILTLGEVGRWLYGGGRFRERAGDLIISLLLFYLI RPHIANLPPLFGTKISSGAIAISIALLGTHGISQLLIYTVKKRTGIDFSEQINKDKK >gi|283548478|gb|GG730299.1| GENE 1808 1963017 - 1963244 88 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQCLSLIDILYPQKPVQQKFIFEYACCQNLVQALSTYPLIYINHTNSSASPNENIGKQSK AVFLEQLNTLALPSR >gi|283548478|gb|GG730299.1| GENE 1809 1963145 - 1963402 99 85 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0792 NR:ns ## KEGG: Ent638_0792 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 85 149 233 235 87 48.0 2e-16 MFAEYMGAKNILILGYDCSVADGLHWHGQHTMTGNPTELLTKIWQSEFLSLSHYLDGKAR VFNCSRKTALDCFPIFSFGEALELV >gi|283548478|gb|GG730299.1| GENE 1810 1963752 - 1964375 386 207 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0794 NR:ns ## KEGG: Ent638_0794 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 205 1 204 204 239 55.0 7e-62 MKAFTETLNQGLVWLPELGIGHYPVPQDCRPYDDSYFSNYQSLADTVIGKKLTQARIDMI ARHYTGSVVDVGIGSGIFVESRAHTTGYDVNPKGIEWLRQRDLWSDLYQHTYPALSFWDS LEHIDRPDIAVAQSQRWVFVSIPVFRNGEHVLRSKHFKPAEHIWYWSHEGVISWFLEQGF ALAEYNDIESQHGREGIHSYAFVRIFQ >gi|283548478|gb|GG730299.1| GENE 1811 1964359 - 1965225 118 288 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0793 NR:ns ## KEGG: Ent638_0793 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 4 287 6 286 313 291 49.0 2e-77 MCKLFFEGMYGLGDNIYQRPFLRHFPGAYVRTPWPELYCDLDIHCVRSKTKLHAQRKNEE RTQYSFINLPDNVQRVRIGYSPADLQKYGVIGTFRKQFNINDPLEYDLPDFNDRYEGIPF EQRIAIIRPATLRREWESSARNPEPDYINHAAHILRQEGFFVISIADTEPDIEWIIGTPP AADLNLINGELTLTQLCTLYKQATCVVSPVGFSIPMSIAYRTPLFVIGGGRGGHNAPEIL TDPEMPLNKIKWALPDNYCRCTMAKHDCSKTIAHFDDKFYGWLNESVY >gi|283548478|gb|GG730299.1| GENE 1812 1965259 - 1965420 74 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALTTVLTPVTAILSFKELFSARLKLKKRHMQQVHFSHTALSKVAGDIYNTIR >gi|283548478|gb|GG730299.1| GENE 1813 1965521 - 1969840 2557 1439 aa, chain - ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 903 81 978 1027 748 60.0 0 MATGAAANSVEEWLSHFGTAEVNLNTDENGNWDNSSIDFLAPLYDNKKSVLFTQLGLRAP DGRTTGNIGMGVRSFNTENWMFGGNVFFDDDFTGKNRRVGIGAEAWTDYLKLAANSYIGT TEWHSSRDFADYNEKPADGFDIRAEGYLPAYPQLGAKVMYEQYYGENVALFDKDHLQNDP SAVTMGLNYTPISLVTAGIDYKRGQDSQDDVKFSLNFRYAIGESWSQQTSADQVALRRSL AGSRYDLVNRNNEIILQYKKKDAELVLADMTLVATKDHSPADGTTANMVTLQAITSDHKP VPGATIAWAVTGGAQLSSKNSVTDANGDASVSLTNTTAEQVSVTASSGGVTRAIDLSFTQ SVASLGLVLTKNHSKADGIDQNIGQVTVKDASGKVLPGIALAWHLDNGAVITSSDNTTNA DGQATVHFTSTKAGLVKLSASAEGKTESINADFASPPVSSIEVSMTTNNAIADGSSTDVA QAQVTDSAGLPIPDTSVTWTVSGSAIATTATVVNTDNNGKATLKLTDSVAENVVVTVTAE GKTGSTTALFSAAPVNNVSVNMVTNNVQADGSTPDVARAVVKDANGQPMADTSVTWTVSG NAKAASATTVNTDTNGVATLNLTDTVAENVAVNAVAEGKSGSATATFTAIPVDSVAVTMK TNDVYADGSTPNVAQAVVKDASGQPMADTRVSWTVSGSAKAASATTVNTDANGVATLELT DTVAESVIVNAAADGKSGNATAIFTPLPVNSVTVTMKTNNVQADGSTPDVAQAVVKDANG QPMADTRVTWTISGNAKAVSATTVNTDTNGVATLDLTDSVVESVTVTATADDKSGSDTAI FSAIPVDKVAVTITTDNSPADNGTTNAAQALVTDAKGQPMANVSVNWAITGSTTATAGSP ETVMTNTSGIAVLTLKDSEPEVVTVTANAGGKSDSATTTFTPREAKNIALKVTEDNAIAD NTAINTVQATVDDGYGKPIKNVSVTWSIGGSSTAKLSTPAIATTDENGIVTVSLTDPVAE PVHVIASSAGLTNTTSVTFVPVPVGDVAVTMTTDNSPADNETNNIAQAKVTDAKGQPMAD VSVTWAITGSTTASTSSAETVTTDASGIATLKLKDSVPESVTVTANAGGQSGSTTTTFVA REVATITLTATGDNAIADNTELNTVQALVKDGNDKPIQNANVSWSISGSSTATLSTAVMV TTDANGIANVSLKDSQPESVNVTASSGGISNTASVTFTPVPAASVVVTMTTPSSPADGST PNVAQALVTDAKGQPMANVSVSWTMSGKAQAASATTVNTDANGIATFSLTDTTMEFVTVT ATAAGLSGSAQAQFSGLDVDHLTIVTLIDGKGIRYGQPNEVEVTAYDTKGQPMQGVGIKL TSGSTSAYFTSPDIGVTDGSGKFTAYVMASIPGGTIITATTTNSSGAARTAQVAVHFTS >gi|283548478|gb|GG730299.1| GENE 1814 1970653 - 1971306 460 217 aa, chain - ## HITS:1 COG:no KEGG:Entcl_0627 NR:ns ## KEGG: Entcl_0627 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 5 217 14 232 232 109 32.0 1e-22 MAEPVNAFHSIQTDKPVQHINALIGPLSCDRRVTVFDAGTQKPFPHISEHVGPIIVVLEG GFEIRRTDGLVLVRGGGPYVLGLGEALYGRGRHTIYCTTALNIVSLSKEEAFEIVDKESL WSHVANLLAWQLQLMVARDEELTSVDAYTMIRAKLSELYMLKTQFGLSFNIVDFIQQRTN LSRSIIHQVISELKRGEYITIVRGRLVDMKSSLPQKY >gi|283548478|gb|GG730299.1| GENE 1815 1972289 - 1973308 926 339 aa, chain + ## HITS:1 COG:no KEGG:ESA_00986 NR:ns ## KEGG: ESA_00986 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 9 337 6 332 339 101 31.0 5e-20 MILADSDHIVAVHADPQVAVIPVSKVVTLTAAVADASGAPVSGVTVYWANTLPPVTLVTS ETDSSGVATLEITLSSLPEGLGVYRYIAYLDSDISTSMQVDVRIADNTVSLPLVTDGGDL DLDKYDIANGVTVSIQAYAQASRGDQVSFYWDEIHSVSKFIDDPATFFPWNINVNEDLPP EALVDGTYTLYYQYTDSQGNIAVSLPRMETVSGGEPAATLPAADFPEADANNGYINARQA LDGTPARLYWPGIAVNDTVTMTWMVYDQNGVQVAKDIALTGTVDAEDLKNNYLEILIPAA DIPQGIQLGTAEAWYSMTPANGDTVKTSAVATIGIDTQA >gi|283548478|gb|GG730299.1| GENE 1816 1973363 - 1975423 586 686 aa, chain + ## HITS:1 COG:no KEGG:ESA_00985 NR:ns ## KEGG: ESA_00985 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 19 682 2 674 684 388 41.0 1e-106 MQTTSPANSVLYPPQLPQMSNGSIDSADLIQEPGVLIVINESPNATQGDYLTLYWNGIQS GLLYIESDSPENYFPWNITIDADLVPDGSYPLYYTRLDAHGNIAVSDTVIAIVRRSDTGI LPAPIFPEANDSNTITGDALADGSTLVQIPAYTGMATGDDVFVYWVGADNTGNVVQDSVY SLMHSVSSTEAGHPFSVQIPAPYVSVIGTGKASAWYTVQPAAGGRARNSDTATANIDTAQ TALLAPYFPEGNDGWIDSSEAMDGTPVAVRAYLGATAGDIVTVSWQGYAKEVPVIASSGS ILHTLTSAEIATGFSVVVPAADIEAVGIGTLQAWYSVEFVGDGSGISATATVNIDTVHTQ LFPAPTLPEAAGDNTIDSTEYADGTPMQISYPSLMEDDVVTLYWQGYLSDGITPVDGTAW SLVHPVTAAESAAGVFTEIVPASAISPIGNGMATAYYTVVLANRRGIAESMPTNVEIATQ SASTLRMNCTTGAPIFDPTVQVRPINTVTLHGPAGEDVTLSLSSTSDAWFNPDGTKTLNI RLDSTGKSSAQVYCFTTGNVTVTAYLQTDPTQDASGVMTFTSWLSGQGDLQYYGMSSNAE ADGETLCSVYLQTSAISTATQARLTLNNNSATIASSGSQVAFVNVSSTHAGSFDLTDKVV EAADFTLMLVDTDDYITGSVTFITPM >gi|283548478|gb|GG730299.1| GENE 1817 1975596 - 1976072 348 158 aa, chain + ## HITS:1 COG:no KEGG:SARI_00646 NR:ns ## KEGG: SARI_00646 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 2 156 1 155 161 189 58.0 4e-47 MINKESKIIPLLRQEEGVRYTPYLDSLGYPTTGVGFKLGPQGAPLSHYTFTLSDSVIDAW LENNIAHTLTAMMENSEIAIALKHCHQPRQDILISMGYQMGVTGLGNFHHMLSAMIQEDW NNAADQMLNSTWAKQTPGRAHRHAEVMQSGMWLPTYEI >gi|283548478|gb|GG730299.1| GENE 1818 1976302 - 1976955 249 217 aa, chain + ## HITS:1 COG:no KEGG:ESA_00985 NR:ns ## KEGG: ESA_00985 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 4 200 476 674 684 176 56.0 6e-43 MAILQMSCSTGAPFFDPTVPVRPMNTLSLLGSAGSDVVLSLPSGSDAWFYPDGVQTLQLR LDADGAGSAQVYSFSTGNVLANVYVVTNPVEQTSASMTFTDWLKGQGELSLYGMSTGAQA DGNTHCSVYLQTNSASAATQAALSLTTGSAIITISGKQKAFEDVSSHVGSFDITDNVIEA ATFTLSLVDTEDYVSGILSFVEPLHYIAEKFSFQQMS >gi|283548478|gb|GG730299.1| GENE 1819 1977071 - 1978198 1197 375 aa, chain - ## HITS:1 COG:ECs0939 KEGG:ns NR:ns ## COG: ECs0939 COG2265 # Protein_GI_number: 15830193 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli O157:H7 # 1 374 1 374 375 682 88.0 0 MQCALYDAGRCRSCQWIEQPVSHQLTAKMADLRQLLAEHAVAEWRAPVSGPESAFRNKAK MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG ELKYLLLTESQFDGGMMLRFVLRSDVKLAQLRAALPWLQAQLPQLKVIAANIQPVHMAIM EGETEIFLTEQQALAERFNDVPLWIRPQSFFQTNPVVAGHLYATARDWVRQLPVDHMWDL FCGVGGFGLHCATPQMKLTGIEIAPEAIACAKQSAQELGLQNLHFQALDSTQFATAQGEV PDLVLVNPPRRGIGKPLCDFLSHMAPRFIIYSSCNAQTMAKDIHELPGYRIDRVQLFDMF PHTAHYEVLTLLSRR >gi|283548478|gb|GG730299.1| GENE 1820 1978335 - 1978751 372 138 aa, chain - ## HITS:1 COG:no KEGG:CKO_02248 NR:ns ## KEGG: CKO_02248 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 138 25 162 162 228 89.0 6e-59 MQVAALAIIMIRCLDLLMIFNTLGFRGTSEFIHRSVQTWNLTLVFLGSLALLFIEIYCAF SLVKGRNWARWIYLLTQIIASIYLWAASLGYGYPELFSIAGESKREILRTLVMQKLPDML VLLLLFVPASSRRFFRLQ >gi|283548478|gb|GG730299.1| GENE 1821 1978883 - 1979728 808 281 aa, chain - ## HITS:1 COG:STM0880 KEGG:ns NR:ns ## COG: STM0880 COG1177 # Protein_GI_number: 16764242 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Salmonella typhimurium LT2 # 1 281 1 281 281 452 95.0 1e-127 MNNLPVVRSPWRIFILVLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDTA MISAVGMSLTIAAGAATMAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLS LLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGAT PLKVFFVITLPMIMPAVISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNP EINALATLILGVVGIIGFIAWYLMARTEKQRIRDIQRARRG >gi|283548478|gb|GG730299.1| GENE 1822 1979725 - 1980678 1096 317 aa, chain - ## HITS:1 COG:STM0879 KEGG:ns NR:ns ## COG: STM0879 COG1176 # Protein_GI_number: 16764241 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Salmonella typhimurium LT2 # 1 317 1 317 317 522 93.0 1e-148 MSTLEPPARVDKAGRFTLFISRLQMKHGRKLVIALPYVWLILLFLLPFLIVFKISLSEMA RAIPPYTDLIAWADDQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAGISTICCLLLGYPL AWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNVLMWLGVIDQPLTI LHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGG IIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIV PIMWFHKYQQKSVGEHG >gi|283548478|gb|GG730299.1| GENE 1823 1980688 - 1981821 1337 377 aa, chain - ## HITS:1 COG:STM0878 KEGG:ns NR:ns ## COG: STM0878 COG3842 # Protein_GI_number: 16764240 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Salmonella typhimurium LT2 # 1 377 1 377 377 726 93.0 0 MNDATPRPQAKIRKALTPLLEIRNLTKSFDGQHAVDDVNLTIYKGEIFALLGASGCGKST LLRMLAGFEQPTTGQIMLDGVDLAHVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDK LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL DKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH PTTRYSAEFIGSVNVFEGLLKERQEDGLVIESPGLVHPLKVDADASIVDNVPVYVALRPE KIMLCEAPPPDGYNFAVGEVVHIAYLGDLSVYHVRLKSGQMLSAQLQNEHRYRKGLPTWG DEVRLCWDADSCVVLTV >gi|283548478|gb|GG730299.1| GENE 1824 1981960 - 1983072 1273 370 aa, chain - ## HITS:1 COG:STM0877 KEGG:ns NR:ns ## COG: STM0877 COG0687 # Protein_GI_number: 16764239 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Salmonella typhimurium LT2 # 1 370 1 370 370 718 96.0 0 MTALNKKWLSGLVAGALMSISAGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVIYD VFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPGWKNLDPELLKLV GKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGPDAPVDSWDLILKPENLEKLKSCGVSFL DAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDTCV AIGWAGDVWQAANRAKEAKNGVNISFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLL RPDVIAHISDHVFYANANKEATALVSQEVRDNPGIYPPADVRAKLFTLKVQDPKIDRVRT RAWTKVKSGK >gi|283548478|gb|GG730299.1| GENE 1825 1983506 - 1983982 496 158 aa, chain - ## HITS:1 COG:no KEGG:CKO_02254 NR:ns ## KEGG: CKO_02254 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 158 1 158 158 275 92.0 4e-73 MTSLVVPTLDTLRQWLDDLGMSFFECDTCQALHLPHMQNFDGIFDAKIDLVDNVILFSAM AEVRPSALLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVTPGVTFEQFECFV RQSEEQISMVILEAGAHQLLFNAEEDTQNSNAEVHFLH >gi|283548478|gb|GG730299.1| GENE 1826 1984073 - 1984975 1490 300 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|237781815|ref|YP_002848762.1| ribosomal protein S6 modification protein [Citrobacter sp. 30_2] # 1 300 1 300 300 578 98 1e-163 MKIAILSRDGTLYSCKRLREAAMQRGHLVEIIDPLSCYMNISPAASSIHYKGRQLPHFDA VIPRIGSAITFYGTAALRQFEMLGSYPLNESVAITRARDKLRSLQLLARQGIDLPITGIA HSPDDTSDMIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVVDAFRGLNAHILVQEYI KEAKGRDIRCFVVGDEVVAAIERRAKEGDFRSNLHRGGVATIANITPREREIALKAAQTM GLDVAGVDILRAERGPLVMEVNASPGLEGVEKTTGIDIAAKMIQWIERHATPEFCLKIGG >gi|283548478|gb|GG730299.1| GENE 1827 1985035 - 1985757 786 240 aa, chain - ## HITS:1 COG:ECs0931 KEGG:ns NR:ns ## COG: ECs0931 COG0778 # Protein_GI_number: 15830185 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Escherichia coli O157:H7 # 1 240 1 240 240 417 85.0 1e-117 MTPTIDLLRSHRSIRHFTDDVISDAQREAIIAAAQGTSSSSFLQCTTIVRITDKTLRESL ATLSGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALTAAE SLGLGGVFIGGLRNNIEPVTELLKLPQHVLPLFGLCLGWPADNPDIKPRLPAALVVHENQ YQPLNTDLLSQYDEQLAHYYLTRGSNTRRDTWSDHIRRTIIKESRPFILEYLHKQGWATR >gi|283548478|gb|GG730299.1| GENE 1828 1985741 - 1986031 323 96 aa, chain - ## HITS:1 COG:no KEGG:SPAB_02616 NR:ns ## KEGG: SPAB_02616 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 96 1 96 96 110 68.0 1e-23 MRTMGVLPKSVLMLEMMGMVLLSLALLSLNDYLALPAPLNSPLAWIVMIFLGVLLMLPAA VILMWRIAQMLAPQLMSRAPDDSSRIARDKKDDSNH >gi|283548478|gb|GG730299.1| GENE 1829 1986204 - 1986467 393 87 aa, chain + ## HITS:1 COG:STM0872 KEGG:ns NR:ns ## COG: STM0872 COG0695 # Protein_GI_number: 16764234 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Salmonella typhimurium LT2 # 1 87 1 87 87 177 94.0 6e-45 MFAVIFGRPGCPYCVRAKELAEKLSSEHDDFNFRYIDIHAEGITKADLEKTVGKPVETVP QIFVDQKHIGGCTDFEAWAKENMNLFA >gi|283548478|gb|GG730299.1| GENE 1830 1986502 - 1986900 82 132 aa, chain - ## HITS:1 COG:no KEGG:SARI_02059 NR:ns ## KEGG: SARI_02059 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 7 130 1 123 125 191 83.0 9e-48 MCQEERLKHKQSWAGAICCFVLFIVVCLSLTLNVKGAFKAAGHPEVGLLFFILPGAAASF FSHRREVLRPLLGAMLAAPCCLLLMRFVFMPTRSLWQELAWLFSAVFWCALGALCFLFIS SLFNQHQRRKKN >gi|283548478|gb|GG730299.1| GENE 1831 1987152 - 1988837 1859 561 aa, chain + ## HITS:1 COG:STM0870 KEGG:ns NR:ns ## COG: STM0870 COG2985 # Protein_GI_number: 16764232 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 1 561 1 561 561 1030 98.0 0 MNINVADLLNGNYILLLFVVLALGLCLGKLRLGSVQLGNSIGVLVVSLLLGQQHFSINTD ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAMLIALGLGRLFGWDIGL TAGMLAGSMTSTPVLVGAGDTLRHSGMAGTQLSTALDNLSLGYALTYLIGLVSLIVGARY LPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWADGKNLRELGIYR QTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDM RIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGD ARRVKTIADRIGFISIHSQVTDLLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAG IMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGIGNGLGAVGGQMLIAGL VVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYA IANVLLTLAGTLIVIVWPGLG >gi|283548478|gb|GG730299.1| GENE 1832 1989812 - 1990330 0 172 aa, chain + ## HITS:1 COG:no KEGG:ECB_00840 NR:ns ## KEGG: ECB_00840 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 3 172 99 268 268 246 74.0 4e-64 MYAICFFGPTLVQTIKTPSNSTLLYWKKSGESFYISNKQATAATILATPAWEISKDDCKQ SSFASSGNYKLLTIEQKEDLCKLLTTDEGNVYIDKAVKKFVKAKFFIYSFVPMAIFILLW LSLGLMLTIHYSKKVRKYILTEQKSAIHWANGEFKSEGIYAIYQELEHKPRY >gi|283548478|gb|GG730299.1| GENE 1833 1990960 - 1991454 35 164 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085647|ref|ZP_06353597.2| ## NR: gi|291085647|ref|ZP_06353597.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 164 7 170 170 295 100.0 6e-79 MTFSDETIMACQITAAIFMGWDYFMPKSHRKLLNRKLREYFSGVQCNVDKDIGKTVEYII VGIRPILLSLLMVVVGIVIMRLSIKLSDLSPWLFLISNLTSLTIFCVGFNYLLGVFVKII TPLGLGGIFRLTTTFLLNTEKGPVAGVGFLALVISFIMRYCNIN >gi|283548478|gb|GG730299.1| GENE 1834 1991697 - 1992611 247 304 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631297|ref|ZP_00156835.1| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily [Haemophilus influenzae R2866] # 8 272 6 261 290 99 27 5e-19 MPYILLSLAACFWGGNYVVGHVLVAEVNPIVLSAARWIFTAMLLVALYFRQVAEQWSAMR KSFGTIVFLALCGQVLFPLTLYIGLQYTTSLNAAIYMSTTPALVLLINKFFFKERISARN IAGVILSTVGVIWLVSQGDMMHARVFAHLNQGDFWTMGSALSWAVYCAFLRIKPREVKGN AFVAVSALLGAMVLIPVLAVELMRNGMPGWDSYANTGVITGLAYLVIFPSWLSYLLWNKG ISAIGATRGEIYSHLIPLSGGLFSVMFLHVTLHSYHLVSALVIVCGIALCSRPTAKRIAQ ERAV >gi|283548478|gb|GG730299.1| GENE 1835 1992714 - 1993628 427 304 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149913192|ref|ZP_01901726.1| 50S ribosomal protein L35 [Roseobacter sp. AzwK-3b] # 6 296 4 292 305 169 32 7e-40 MKFTLRQLEFYIALAETLQISKAAARCHISQSSMTIAMRNLEEALDVQLFVRYPKGVKLT AEGERFLAHACNIINCSRSAVDALHDRSEILTGTVRIGIAETLSAYLIPDILNDIERRFP LLELVFHEATAPQLVQALREQKVDFCLLLTSNIGHDTDLEIETFIRSQRRLWTSIGHPLQ SQSSIRLIDVVKLPFLLLETDKYPDVIIDYWQQRGFTPNICFRSNSFEAIRSLVAKGRGI TILSDLVYRPWSLDGLRVMHRTIDDFITWMDVGTVKIAAQPLTPEAMKVIDFLRQAITRL DKPF >gi|283548478|gb|GG730299.1| GENE 1836 1993634 - 1994182 454 182 aa, chain - ## HITS:1 COG:ECs0926 KEGG:ns NR:ns ## COG: ECs0926 COG3226 # Protein_GI_number: 15830180 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 178 1 178 178 296 84.0 2e-80 MRRANDPLRREKIVQATLEAVITYGVHGVTHRKIATIAGVPLGSMTYYFSGIDELLMEAF GRFTAMMSQQYQAFFADVADAQAACHAITEMIYSSQVTTPDNMELMYQLYAFASRKPTLK TVMQNWMLRSQQTLEQWFEPVTARALDAFLEGMTLHFVTDKKPLSREDILVMVERIAGLS QR >gi|283548478|gb|GG730299.1| GENE 1837 1994228 - 1994380 75 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085649|ref|ZP_06571142.1| ## NR: gi|291085649|ref|ZP_06571142.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 50 47 96 96 72 100.0 8e-12 MAGVRVAQEAINNPGKKKNVKSAQVRRLKALRDEMPVMNSSQTKEGRRQH >gi|283548478|gb|GG730299.1| GENE 1838 1994349 - 1995476 1242 375 aa, chain + ## HITS:1 COG:ybjJ KEGG:ns NR:ns ## COG: ybjJ COG0477 # Protein_GI_number: 16128813 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 375 28 402 402 561 90.0 1e-160 MASWATRTPAIRDILSISTAEMGAVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMSCA VLGMAILSVALWLHSAWLFAFGLGVFGASFGAAEVAINVEGAAVEREMNKTVLPMMHGFY SLGTLAGAGVGMMLTAFSVPATVHILLAAMVAITPIFIAIKAIPDGTGKNAADGSHSGEK GLPFYRDIQLLLIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVG RFTGGWFIDRYSRVAVVRASALMGALGISLIIFVDSTWVAGVSVILWGLGASLGFPLTIS AASDTGPDAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVLIAAIVAKA VAKPDLKNTPVMENS >gi|283548478|gb|GG730299.1| GENE 1839 1995476 - 1996291 779 271 aa, chain + ## HITS:1 COG:STM0867 KEGG:ns NR:ns ## COG: STM0867 COG0561 # Protein_GI_number: 16764229 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 269 1 269 271 451 82.0 1e-127 MSIKLIAVDMDGTFLSDQKTYNRERFMAQYRQMKKQGIRFVVASGNQYYQLISFFPELAS EISFVAENGGWVVSEGKDIFNGELAKDDFQTIVEHLLTRTDIEVIACGKNSAYTLKKYSD EHKSVSAMYYHRLEFVDDFENLNDVFFKFGLNISDDCIPLVQADLHEAIGDIMVPVHTGY GSIDLIIPGVHKANGLRLLQQRWDISDNEVAVFGDGENDIEMLRQAGFSFAMANAHAPVI RAAKYRAGSNNEEGVLDVIDRVLKNEAPFTH >gi|283548478|gb|GG730299.1| GENE 1840 1996400 - 1996681 207 93 aa, chain + ## HITS:1 COG:no KEGG:SSON_0828 NR:ns ## KEGG: SSON_0828 # Name: ybjH # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 93 3 93 94 100 82.0 2e-20 MKKSVLMAALLLGFTGTALAQSVTVDVPSGYKVVVVPSSVSVPQAVSVTTAPQTVYVAPT PAPAPVYRAHPYARHVASVGEGMVIEHQIDDHH >gi|283548478|gb|GG730299.1| GENE 1841 1996872 - 1998104 1433 410 aa, chain - ## HITS:1 COG:ECs0922 KEGG:ns NR:ns ## COG: ECs0922 COG0477 # Protein_GI_number: 15830176 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 409 1 409 410 670 90.0 0 MQNRLSSGARLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVVEQYNAGLDWVPTSMTA YLAGGMFLQWLLGPLSDRIGRRPVMLTGVLWFIVTCLATLLAQNIEQFTFLRFLQGISLC FIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWVHILPWEGMFILFAAL ASISFFGLQRAMPETATRLGEKLSIKELGKDYKLVLKNGRFVAGALALGFVSLPLLAWIA QSPIIIISGEHLSSYEYGLLQVPIFGALIAGNLALARLTSRKTVRSLIIMGGWPIAVGLV IAAAATVVSSHAYLWMTAGLSVYAFGIGLANAGLVRLTLFASEMSKGTVSAAMGMLQMLI FTVGIELSKHAYLLGGNGLFSLFNLASGVLWLILMVIFLKDKRVGNSRKI >gi|283548478|gb|GG730299.1| GENE 1842 1998352 - 1999011 671 219 aa, chain + ## HITS:1 COG:STM0865 KEGG:ns NR:ns ## COG: STM0865 COG0671 # Protein_GI_number: 16764227 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Salmonella typhimurium LT2 # 18 219 1 202 202 311 79.0 4e-85 MLSPLWAFLTITLSLEVMLENLNNSLFYLINATPDSAQWAISLAIFIAKDLISIVPLLAV VLWLWGPRAQVTLQRQLVIKMAMALIVGLTISWLMGHLFPHDRPFVNHIGYTFLHHAADD SFPSDHGTVIFTFALAFLFWHRLWTGALLMVVAVAIAWSRVYLGVHWPLDMLGGLLAGLI GCLSAQMIWQRFGAILYFGLQSCYRTCFALPIRKGWVRD >gi|283548478|gb|GG730299.1| GENE 1843 1999076 - 1999834 740 252 aa, chain + ## HITS:1 COG:STM0864 KEGG:ns NR:ns ## COG: STM0864 COG1349 # Protein_GI_number: 16764226 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 252 1 252 252 466 87.0 1e-131 METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNNDAPVVLLGGYIVLEP RSANHYLISDQKSRLVDEKRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAI CYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPLDFQETLNNLCPDIAFYSAAGVHIEK GATCFNLEELAVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDKRPDDEFV EYAKAQRIKLMY >gi|283548478|gb|GG730299.1| GENE 1844 1999879 - 2001102 1255 407 aa, chain - ## HITS:1 COG:ECs0919 KEGG:ns NR:ns ## COG: ECs0919 COG1686 # Protein_GI_number: 15830173 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Escherichia coli O157:H7 # 8 407 1 400 400 744 93.0 0 MDTRVAFMTQYFSSLRSFAAGSALLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVL AEGNADEKLDPASLTKIMTSYVVGQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFL KPGDQVAVSDLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH GLDAAGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDG MKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKP DATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASFTLTEPQLTAPLKKGQVVGT IDFQLNGKSIEQRPLMVMEAVEEGGFFSRMWDFVMMKFHQWFGGWFS >gi|283548478|gb|GG730299.1| GENE 1845 2001411 - 2002037 642 208 aa, chain + ## HITS:1 COG:STM0862 KEGG:ns NR:ns ## COG: STM0862 COG0625 # Protein_GI_number: 16764224 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 1 208 1 208 208 350 83.0 1e-96 MITLWGRNNSTNVKKVLWTLEELELPYNQILAGGQHGGNRDADYLAMNPNGLVPLLRDDE TDVLLWESNTIVRYLAAQYGQKRLWVEAPAARAVGEKWMDWANQTLSPTHRVILFGLVRT PADQRDMAAIEASAQACDNLFAILDNALADQPWFSGAEFGTADIAIAPFVYNLFNVGLTW TPRPHLERWYQQLTERPAFQKVVMIPVS >gi|283548478|gb|GG730299.1| GENE 1846 2002043 - 2003140 891 365 aa, chain - ## HITS:1 COG:ECs0917 KEGG:ns NR:ns ## COG: ECs0917 COG2133 # Protein_GI_number: 15830171 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose/sorbosone dehydrogenases # Organism: Escherichia coli O157:H7 # 1 365 1 369 371 598 79.0 1e-171 MRRLFLCAIPLALFSSYANAVKVEVLQTKLDHPWSLAFLPDNRGMLITLKGGQLRLWQPG KGLSDPLTGVPKVWANGQGGLLDVALAPDFAQSRRVWLSFAEADSEGKAGTAVGYGHLSD DLKHLQAFQTVFRQQPKLSTGNHFGGRLVFDGHGYLFIGLGENNQRATAQDLDKLQGKVV RLTDEGKIPPDNPFVNQAGARAEIWSYGIRNPQGMAMNPWSDALWLNEHGPRGGDEINIP ARGKNYGWPIATWGVNYSGLKIPEAKGQIVAGTEQPIFYWEKSPAVSGMAFYHSDTFPQW RQKLFIGALKDKEVIVLSVKGNAVTEDGRILQDRGQRILDVRVGPDGYLYVLTDESDGEL LKVSP >gi|283548478|gb|GG730299.1| GENE 1847 2003243 - 2003626 301 127 aa, chain - ## HITS:1 COG:no KEGG:CKO_02273 NR:ns ## KEGG: CKO_02273 # Name: bssR # Def: biofilm formation regulatory protein BssR # Organism: C.koseri # Pathway: not_defined # 1 127 12 138 138 188 85.0 5e-47 MVVDRLRTDLLNKLINARIELAAYLLLRKAKGYMSVSESDRLRDNFFVLNRELHEQSQLH GMHLDQEEWNALHRAEGALAAAAVCLMSGHHDCPTFIAVNAEKLENCLTTLTLSIQCLQS YPTLEHV >gi|283548478|gb|GG730299.1| GENE 1848 2003847 - 2004773 495 308 aa, chain + ## HITS:1 COG:ECs0642 KEGG:ns NR:ns ## COG: ECs0642 COG0583 # Protein_GI_number: 15829896 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 13 296 7 290 300 98 27.0 1e-20 MSKANDAEKIRTLSKIDLNLLTIFCLIYSVGSISRVADMLNISPSAVSQSLRKLREMMGD NLFVRSGNALLPTVYSDELYDNTIPIIDKLSSLMPLSTPGAKKRLTLYTESFISPIVIPD VTARIIDTDADISLLHLTADLNEQSIIELLNMRQADAVFSTFSVESASLSCQKICDMRLV LVASQKNALYGSSISEAQFRNANLVGYNTKNEKIIYHRSIVDKKFRTGERCLLTSSFTAI LTIVSNTHCVGVIPEKVFATHAHLYGLKKINTPFPLPQFSVFASSRKDSNTHKILSPILA DLQTTSLL >gi|283548478|gb|GG730299.1| GENE 1849 2005046 - 2006305 1193 419 aa, chain - ## HITS:1 COG:glgP KEGG:ns NR:ns ## COG: glgP COG0058 # Protein_GI_number: 16131302 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Escherichia coli K12 # 14 414 14 413 815 650 80.0 0 MYISPLPLAADSDVDKLRDDIANKLLFTIGKDPAIATKREWLNATLYAVRDRMVERWHRS NRAQFSQDARQVYYLSMEFLIGRTLSNALLSLGIYDEVKSALEAMGLELEELIDEENDPG LGNGGLGRLAACFLDSLATLGLPGCGYGIRYNYGMFKQNIVNGVQKESLDYWLEYGNPWE FKRHNTHYKVRFGGRLQQEGNKTRWLETEDILAVAHDQIIPGYATDTTNTLRLWNVQINS EVNAGKLNLQEDFAAEVENKYHFDRISRVLYPDDSTDAGRELRLRQAYFLASATIQDILS RHYQLHRTYDNLADKIAIHLNDTHPVLAIPELMRLLIDHHQFSWDNAFDVTCQIFSYTNH TLMSEALETWPVEMLSRILPRHLQIIFEINDRFLKTLQERYRDDSELLQRVSFLCVSPT >gi|283548478|gb|GG730299.1| GENE 1850 2006358 - 2006543 57 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085653|ref|ZP_06571144.1| ## NR: gi|291085653|ref|ZP_06571144.1| putative glycine cleavage system T protein [Citrobacter youngae ATCC 29220] putative glycine cleavage system T protein [Citrobacter youngae ATCC 29220] # 1 61 1 61 61 107 100.0 2e-22 MKDIVLQSKLEMAKTLYANGVSLYYISLATGLSWRVLMTELTFIASHEIIRQKADARKPR V >gi|283548478|gb|GG730299.1| GENE 1851 2006775 - 2008082 618 435 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228000795|ref|ZP_04047796.1| SSU ribosomal protein S12P methylthiotransferase [Brachyspira murdochii DSM 12563] # 1 435 1 439 440 242 35 5e-62 MAKIGFISLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEA IGEALNENGKVIVTGCLGAKVDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFQ SLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAKRLVDAGV KEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVDLCEQLSKLGIWTRLHYVYPYPHVDD VIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIV GFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANDLPDQIPEEVKEERWNRFMQL QQQISAERLQEKVGREILVIVDEVDEEGAIGRSMADAPEIDGAVYLNGETQVKPGDIIRV KVENADEYDLWGTRV >gi|283548478|gb|GG730299.1| GENE 1852 2008177 - 2009046 989 289 aa, chain - ## HITS:1 COG:ECs0911 KEGG:ns NR:ns ## COG: ECs0911 COG1173 # Protein_GI_number: 15830165 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 289 15 303 303 502 92.0 1e-142 MPLVKPEQIRTPWHEFWRRFRRQHMAMFAGLFVLALIAVAIFARWLTPFDAENYFDYDRL NDGPSMLHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVLIGAAIGTVLGLLAGYYEGWWD RLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQT FIESARSIGASDATIIFNHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEW GAMLNEARADMVIAPHVAIFPAVAIFLTVLAFNLLGDGLRDALDPKIKG >gi|283548478|gb|GG730299.1| GENE 1853 2009091 - 2010011 963 306 aa, chain - ## HITS:1 COG:STM0850 KEGG:ns NR:ns ## COG: STM0850 COG0601 # Protein_GI_number: 16764212 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 306 1 306 306 525 92.0 1e-149 MLNYVFKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAEVIELVRTQLGLDQP LHVQFWHYMTNVLQGDFGTSMVSRRPVSEEIASRFMPSLWLTIASMAWAVLFGMTAGIIA AVWRNRWPDRLSMTLAVTGISFPAFALGMLLMQIFSVELGWLPTVGADTWLHYILPSITL GAAVAAVLARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAIN PAIRYK >gi|283548478|gb|GG730299.1| GENE 1854 2010058 - 2011596 1848 512 aa, chain - ## HITS:1 COG:STM0849 KEGG:ns NR:ns ## COG: STM0849 COG0747 # Protein_GI_number: 16764211 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 512 1 512 512 910 90.0 0 MTKIVARKWLVAVGVASALAAAPGWAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQ GLFGLDKEMKLKNVLAESYTVSDDGLTYTLKLRQGVKFQDGTDFNADAVKANLDRASNPE NHLKRYNLYKNIDKTEVVDPSTVKITLKQPFSAFINILAHPATAMISPAALKKYGKEIGF HPVGTGPYQLETWNQTDFVKVKKFAGYWQQGLPKLDTITWRPVTDNNTRAAMLQTGEAQF AFPIPYEQAALLAKNKNLELVASPSIMQRYISMNVTQKPFDNPKVREALNYAINRQALVK VAFAGYATPATGILPPSIAYAQSYTPWPYDPAKARELLKEAGYPNGFTTTLWSSHNHSTA QKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKAQKESGVRMFYTGWSASTGEADWAL SPLFASQNWPPTLFNTAFYSNKQVDSDLAAALQTNDPAQKAKLYKDAQDIIWKESPWIPL VVEKLISAHSTSLTGFWIMPDTGFSFDDADLK >gi|283548478|gb|GG730299.1| GENE 1855 2011625 - 2013496 822 623 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 12 572 8 528 563 321 35 1e-85 MPHSDELDFSDVLSVNNLNIAFEQEQQRTSAVRNLSFRLKRGETLAIVGESGSGKSVTAL SLMRLIEQAGGEVRCDEMLLRRRNRQVIELGEQSASQMRHVRGADIAMIFQEPMTSLNPV FTVGEQIAESIRLHQGASHEEAMLEAKRMLDQVRIPEAKAILSRYPHQLSGGMRQRVMIA MALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQQDMSMGVIFITHDMGVVADIADRVL VMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMSGHELPRRFPLISLHDPGHVEP QTEQDTVVEGEPILRVRNLVTRFPLRSGIFNRVTREVHAVENVSFDLWPGETLSLVGESG CGKSTTGRALLRLVESQRGEIIFNGQRIDTLAASKLQPLRRDIQFIFQDPYASLDPRQTV GYSILEPLRVHGLLQGDAAAKRVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL NPKVIIADESVSALDVSIRGQIINLLLDLQRDMGIAYLFISHDMAVVERISHRVAVMYLG QIVEIGTRRAVFENPQHPYTRKLMAAVPVADPSHHRPQRVLLSDDIPSNIRKRGEEIPPV SLQLVGPGHYVARGQPENALSRL >gi|283548478|gb|GG730299.1| GENE 1856 2013483 - 2014448 922 321 aa, chain - ## HITS:1 COG:Z1051m KEGG:ns NR:ns ## COG: Z1051m COG1446 # Protein_GI_number: 15804993 # Func_class: E Amino acid transport and metabolism # Function: Asparaginase # Organism: Escherichia coli O157:H7 EDL933 # 1 321 1 321 321 531 88.0 1e-151 MGKAVIAIHGGAGAITRSQLSQEQELRYIQALSDIVETGQRMLEDGRSALDVVTEAVRLL EECPLFNAGIGAVYTRDETHELDACVMDGNTLKAGAVAGVRHLRNPILAARLVMEHSPHV MMIGEGAENFAIAQGMDRVSADIFSTPERYAQLLAARTAGETVLDHNATPLDENNKMGTV GAVALDMFGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNANVAVSCTGTGEVFIRAL AAYDIAALMDYGGLSLSEACERVVMEKLPALGGSGGLIAVDHEGNVALPFNSEGMYRAWG YAGDTPTTGIYREKGDTVATQ >gi|283548478|gb|GG730299.1| GENE 1857 2014640 - 2015230 330 196 aa, chain - ## HITS:1 COG:STM1264 KEGG:ns NR:ns ## COG: STM1264 COG1708 # Protein_GI_number: 16764615 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferases # Organism: Salmonella typhimurium LT2 # 1 191 67 257 262 210 56.0 1e-54 MQELLTISAPPGTSERYRALEVTIVLYSQMVPWRFPPVREMQFGEWLRDDIRAGVYEPAL VDPDISILLTQARRASVPLFGEPADILFNAIPPGDVLQTFRHTLEQWQHPADLEGDERNI ILALARIWYSVVTGSIAAKDEAASWLMPRLPVEYADTLQAACAEYLGVTKTDWANAMPSV ERFVWYAKKQITDLLA >gi|283548478|gb|GG730299.1| GENE 1858 2015635 - 2016870 1216 411 aa, chain + ## HITS:1 COG:STM0846 KEGG:ns NR:ns ## COG: STM0846 COG0303 # Protein_GI_number: 16764208 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Salmonella typhimurium LT2 # 1 411 3 413 413 744 90.0 0 MEFTAGLMPLETALSQMLSRVTPLTAVETLPLVQCFGRILATDVVSPIDVPGFDNSAMDG YAVRIADLHSGLPLAVAGKAFAGQPFHGEWPAGTCIRIMTGAPVPAGCEAVVMQEQTEQT DDGVRFTADARSGQNIRLRGEDIANGAVVFPAGTRLTTAELPVLASLGIADVPVVRKVRV ALFSTGDELQLPGQPLGDGQIYDTNRLTVHLMLQQLGCEVINLGIIRDDPNALRAAFIEA DSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGLPGN PVSAALTFYQLVQPLLAKLSGNTACGLPPRQRVRTASRLKKTPGRLDFQRGVLQRTAEGE LEVTTTGHQGSHIFSSFSQGNCFIVLERDRGNVEAGEWVEVEPFNALFGGL >gi|283548478|gb|GG730299.1| GENE 1859 2016870 - 2017619 784 249 aa, chain + ## HITS:1 COG:moeB KEGG:ns NR:ns ## COG: moeB COG0476 # Protein_GI_number: 16128794 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Escherichia coli K12 # 1 249 1 249 249 451 89.0 1e-127 MAELSDQEMMRYNRQIILRGFDFEGQEALKEARVLVVGLGGLGCAATQYLAGAGVGHLTL LDFDTVSVSNLQRQTLHSDATVGQAKVLSARDALARINPYIAITPVNALLDDSEIHALIA KHDLVLDCTDNVSVRNQLNIGCFTAKVPLVSGAAIRMEGQITVFTYQEGEPCYRCLSRLF GENALTCVEAGVMAPLIGVIGSLQAMEAIKLLANYGKPASGRIVMYDAMTCQFREMKLMR NPGCEVCSR >gi|283548478|gb|GG730299.1| GENE 1860 2017706 - 2018368 784 220 aa, chain - ## HITS:1 COG:ECs0903 KEGG:ns NR:ns ## COG: ECs0903 COG0176 # Protein_GI_number: 15830157 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Escherichia coli O157:H7 # 1 220 25 244 244 360 88.0 1e-100 MELYLDTSDVAAVTALARIFPLAGVTTNPSIVAAGKQTLEALLPQLHEATGGQGRLFAQV MATTAEGMVSDARKLRSIVADIVVKVPVTKEGLAAIKLLKEEGIPTLGTAVYGAAQGLLA ALAGAEYVAPYVNRVDAQGGDGIQTVIDLQNLLKMHAPHAKVLAASFKTPRQALDCLLAG CEAITLPLDVAQQMISSPAVDAAVAKFEHDWQGAFGRTSI >gi|283548478|gb|GG730299.1| GENE 1861 2018501 - 2019400 727 299 aa, chain + ## HITS:1 COG:STM0844 KEGG:ns NR:ns ## COG: STM0844 COG1180 # Protein_GI_number: 16764206 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Salmonella typhimurium LT2 # 1 299 1 299 299 538 89.0 1e-153 MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDLLYDARLCLDGCDLCAQ AAPAVIERALSGLLIHREKLTDDTFAALTDCCPTQALTVCGEVKSVHDIMSTVLRDKPFY DRSGGGLTLSGGEPFMQPELAAELFKASHDAGIHTTVETCLHVPWKYIEPSLPNVDLFLA DLKHVAAAPFKQWTDGSASRVLDNLKKLAAAGKKIIIRVPLIQGFNADEAAIQAITDFAA DELHVGEIHFLPYHTLGINKYHLLSQPYNAPDKPLDAPALLEFALQYASRKGLTATLRG >gi|283548478|gb|GG730299.1| GENE 1862 2019406 - 2021838 2876 810 aa, chain + ## HITS:1 COG:ybiW KEGG:ns NR:ns ## COG: ybiW COG1882 # Protein_GI_number: 16128791 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Escherichia coli K12 # 1 810 1 810 810 1636 95.0 0 MTTLKLDTLSDRIKAHKTALIHIVKPPVCTERAQHYTEMYQQHLDKPIPVRRALALAHHL AERTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEENKRVL HEVCPWWRGQTVQDRCYGMFTDEQKGLLETGIIKAEGNMTSGDAHLAVNFPLLLEKGLDG LRHKVDERRSRINLTCLEDLHGDQFLKAIDIVLEAVSLHIERFAALARKMASTETRASRR EELLTMAENCDVIAHEPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPFYRRD VELNQSLDREHAIELLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVNGQAV DAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVI PEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLAALEGGRDATSGK VFLPQEKALSAGNFNNFAEVMDAWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVD DCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGAIGQQQLAAALADDFD GLTHEQLRQRLINGAPKYGNDDDSVDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAG TSSISANVPFGAATMATPDGRKARTPLAEGASPASGTDHLGPTAVIGSVGKLPTGSILGG VLLNQKLNPATLENESDKQKLMILLRTFFEEHKGWHIQYNIVSRETLLEAKKHPDQYRDL VVRVAGYSAFFTALSPDAQDDIIARTEHML >gi|283548478|gb|GG730299.1| GENE 1863 2022061 - 2022876 835 271 aa, chain + ## HITS:1 COG:ybiV KEGG:ns NR:ns ## COG: ybiV COG0561 # Protein_GI_number: 16128790 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Escherichia coli K12 # 1 270 1 270 271 499 90.0 1e-141 MTIKVIVTDMDGTFLDDAKNYDRARFMAQYQELKKRDIEFVVASGNQYFQLISFFPELKD EISFVAENGALVFEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSEHAPE SFVALMSKHYHRLKPVKDYQDIDDVLFKFSLNLPDQQIPLVIDHLHTALDGIMKPVTSGF GFIDLIIPGLHKANGISRLLKRWNLSPQNVVAIGDSGNDAEMLKMAHYSFAMANAAESIK TIARFQTDDNNHQGALNVIQAVLDNTSPFNV >gi|283548478|gb|GG730299.1| GENE 1864 2023023 - 2024285 1258 420 aa, chain + ## HITS:1 COG:no KEGG:G2583_1049 NR:ns ## KEGG: G2583_1049 # Name: ybiU # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 419 1 419 421 817 93.0 0 MAFTFTCDTLPADHKAAIRQMKQQLRAQLGDVQLIFNQLSDAIATRVAEINALKAQGSPV WPVLPYADIKAGRVSAEQREEIKRRGCAVIKGHFPREQALAWDQSMLDYLDRNRFDDIYK GPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESEGKQWFNPDV SVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGKLAEYDPWQAAHR TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRPLLDDVPED ELCGVAPGRVLPISAQWHPLLIEALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVM YIPAAPMCEKNLAYAHKVKVALEKGASPGDFPREDYETYWEGRFTLEDLNIHGKRALGII >gi|283548478|gb|GG730299.1| GENE 1865 2024366 - 2025961 2129 531 aa, chain - ## HITS:1 COG:ECs0897 KEGG:ns NR:ns ## COG: ECs0897 COG0488 # Protein_GI_number: 15830151 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 530 1 530 530 1019 95.0 0 MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSL DPNERIGKLRQDQFAFEEFTVLDTVIMGHAELWAVKQERDRIYALAEMSEEDGYKVADLE VQYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSDPDILLLD EPTNNLDIDTIRWLEQTLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEY MTAATQARERLLADNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIKLEEVKAS SRQNPFIRFEQDKKLFRNALEVEALTKGFDEGPLFKNFNLLLEVGEKIAILGANGVGKST MLKTLVGDLQPDNGTVKWSENAQVGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQVVRS FLGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMA LEMYQGTLIFVSHDREFVSSLATRVIEITPERVVDFTGNYEDYLRSKGIDG >gi|283548478|gb|GG730299.1| GENE 1866 2026119 - 2027108 1107 329 aa, chain + ## HITS:1 COG:STM0837 KEGG:ns NR:ns ## COG: STM0837 COG1376 # Protein_GI_number: 16764199 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 24 329 1 306 306 580 95.0 1e-165 MRAQHYINLNPLACLALNLAYMKMNMKLTTLFAAALAVVGFCNTASAVTYPLPTDGSRLI GQNQVITIPEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTV HEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKM HAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDD IKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGGEIVPITLNKNI TSVTGQSDVDQTVVDQAVQNRSGMPVRLN >gi|283548478|gb|GG730299.1| GENE 1867 2027203 - 2028312 995 369 aa, chain - ## HITS:1 COG:STM0836 KEGG:ns NR:ns ## COG: STM0836 COG0471 # Protein_GI_number: 16764198 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Salmonella typhimurium LT2 # 1 369 1 369 370 546 85.0 1e-155 MSFPLLRALQRDRFFQLLIIVGVVLSLFTPFTPRSWPGAIDWRTIITLSGLMLLTKGVEL SGYFDVLGRKMTRRFHTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTITLKKLCAIPV NRLIIFEALAVNAGSLLTPIGNPQNILMWGRSGLSFAAFTWQMAPLAGAMMLTLVALCWF SFPNKALHYHTGTRAPDWQPRLVWSCLALYLIFLTALELKQELWGLAIVAAGFMVLARRV ILSVDWTLLLVFMAMFIDVHLLTQLPALQGITHQIGTLSAPGLWLTAIGLSQFISNVPST ILLLNYVPPTLLLAWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHWYSLPMLIWAAL VGYVLLQVM >gi|283548478|gb|GG730299.1| GENE 1868 2028309 - 2028782 581 157 aa, chain - ## HITS:1 COG:STM0835 KEGG:ns NR:ns ## COG: STM0835 COG1321 # Protein_GI_number: 16764197 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 252 89.0 2e-67 MSRRAGMPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIIEVGEARQVDM AARLGVSQPTVAKMLKRLASVGLIEMIPWRGVFLTAEGERLAQESRERHQIVENFLLMLG ISPEIARRDAEGMEHHVSKETLEAFSRFTQQQGTGSE >gi|283548478|gb|GG730299.1| GENE 1869 2028969 - 2029097 107 42 aa, chain + ## HITS:1 COG:no KEGG:SC0831 NR:ns ## KEGG: SC0831 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 42 1 42 42 70 90.0 2e-11 MNEFKRCIRVFSHSPFKVRLMLISMLCDMINSKPEQDKPSQK >gi|283548478|gb|GG730299.1| GENE 1870 2029374 - 2030954 1580 526 aa, chain + ## HITS:1 COG:ybiP KEGG:ns NR:ns ## COG: ybiP COG2194 # Protein_GI_number: 16128783 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Escherichia coli K12 # 1 526 1 526 527 949 86.0 0 MNLTLKESIIARSRAISPWTGLYFLQSLLINLALGYPLSLLYSVAFTCILTLLWRSAPRA QKVLIGICSLIAAMYFPFGQAYGSPNFNTLLALHSTNMEESTEILTIFPWYSYLVGVFIF ALGVIAVRRKKEAQKRSWNKFDSVCLLFSVVAFFVAPVQNLAWGGVFKLKDSGYPVFRFA KDVIVNNNEVLDEQERMAKLSSVKDSWTVTSVKPKYHTYVVVIGESARRDALGAFGGHWD NTPFASSVNGYLFADYIAASGSTQKSLGLTLNRVVDNKPQFQDNFVTLANRAGFQTWWFS NQGQIGEYDTAIASIAKRADEVHFLKNGDFEADKNTRDEALLKMTAQVLATERTQPQLIV LHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRQLYGQLRNSGSSFSMVYF SDHGLAFKERGKEVQYLAHDDQFQQNFQVPFMVLSSDDKAHRVIKARRSANDFLSFFSQW TGISAKEITNSYRFISEKKAGPVYITNFKLQKVDYNHLGTDIFSTK >gi|283548478|gb|GG730299.1| GENE 1871 2031089 - 2031604 439 171 aa, chain - ## HITS:1 COG:STM0833 KEGG:ns NR:ns ## COG: STM0833 COG3637 # Protein_GI_number: 16764195 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Opacity protein and related surface antigens # Organism: Salmonella typhimurium LT2 # 1 171 1 171 171 275 90.0 4e-74 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGAANKMNGFNLKYRYEQDNNPL GVIGSFTYTEKDRTDASGDYNKTQYYGITAGPAYRLNDWASIYGVVGVGYGKFQNAATPA DNHTTSDYGFSYGAGLQFNPIENVALDFSYEQSRIRSVDVGTWIAGVGYRF >gi|283548478|gb|GG730299.1| GENE 1872 2032005 - 2032892 919 295 aa, chain + ## HITS:1 COG:ECs0891 KEGG:ns NR:ns ## COG: ECs0891 COG5006 # Protein_GI_number: 15830145 # Func_class: R General function prediction only # Function: Predicted permease, DMT superfamily # Organism: Escherichia coli O157:H7 # 1 295 1 295 295 449 91.0 1e-126 MPGSLRKAPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV DFIWVALAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILTGQRAGAEHGPATVA VGSLIAALVFVPIGALQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT LMSMEPALAAVSGMIFLGETLTLIQTLALGAIIAASMGSTLTIRKEPQIKQVDVN >gi|283548478|gb|GG730299.1| GENE 1873 2033196 - 2033699 674 167 aa, chain + ## HITS:1 COG:STM0831 KEGG:ns NR:ns ## COG: STM0831 COG0783 # Protein_GI_number: 16764193 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Salmonella typhimurium LT2 # 1 167 1 167 167 290 94.0 6e-79 MSTAKLVKTKASALLYTRNDVTDSEKKATVELLNQQVIQFIDLSLITKQAHWNMRGANFI AVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHSVQDHLKE LADRYAVVANSVRKAISEAKDEDTADIFTAASRDLDKFLWFIEANIE >gi|283548478|gb|GG730299.1| GENE 1874 2034065 - 2034811 965 248 aa, chain + ## HITS:1 COG:ECs0889 KEGG:ns NR:ns ## COG: ECs0889 COG0834 # Protein_GI_number: 15830143 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 456 98.0 1e-128 MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAVAKE LKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANN NDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTSRADAVLHDT PNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELREKVNGALKTLKENGTYNEIYK KWFGTEPK >gi|283548478|gb|GG730299.1| GENE 1875 2034950 - 2035609 874 219 aa, chain + ## HITS:1 COG:STM0829 KEGG:ns NR:ns ## COG: STM0829 COG0765 # Protein_GI_number: 16764191 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 369 96.0 1e-102 MQFDWSAIWPAIPLLIEGAKMTLWISILGLAGGLVIGLAAGFARTFGGWIANHVALVFIE VIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAVVTIMINSGAYIAEITRGAVLSIHKGF SEAGLALGLSRTETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEI IAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKIL >gi|283548478|gb|GG730299.1| GENE 1876 2035606 - 2036328 599 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 235 47 8e-60 MIEFKNVSKHFGPTQVLHNIDLNIKQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEQAEKLAKEL LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQALIENPPSQRLQEFLQHVS >gi|283548478|gb|GG730299.1| GENE 1877 2036446 - 2038683 1982 745 aa, chain + ## HITS:1 COG:ECs0886_2 KEGG:ns NR:ns ## COG: ECs0886_2 COG0668 # Protein_GI_number: 15830140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 431 745 1 311 311 543 92.0 1e-154 MRWILLVLFCLLSIPSHAVTIPGVTTTASADPQTPPAKEPDVEQKKAAYAALADVLDNEA SRQELIGQLRKVAATPPPEPVPVIVPPTLTEEKTVLENVTDISRHYSEALSDRFAQLYRN ITDAPHKTFNPQTFTNALTHFLMLAASVFGFYWLIRLCALPLYRKMGQWARRKNRERSNW LQLPAMIVGAFIIDLLLLALTLFIGQILSDRMNAGSRTIAFQQSLFLNAFALIEFFKAIL RLIFCPTVAELRPFNIQDAGARYWNRRLSSLSSLIGYGLIVAVPIISNQVNVQVGAMANV IIMLCITLWALYLIFRNKKEITQHLLNLAERSLAFFSLFIRAFALVWHWLASAYFIVLFF FSLFDPGNSLKFMMGATLRSLVIIGIAAFISGMLSRWIAKTITLSPHTQRSYPELQKRLN GWLSTALSVARILTVCVAVMLLLNAWGLFDFWNWLHYGAGEKTVDILIRIALILFFSAIG WTILASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPL LAGAGALGLAISFGSQTLVKDIITGIFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVR QDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVAAVMEKDDIR GLIIGEPSFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANARAPVQTY QVLPAPANSPASAASEPLPPTEPTL >gi|283548478|gb|GG730299.1| GENE 1878 2038680 - 2039606 816 308 aa, chain - ## HITS:1 COG:ybiN KEGG:ns NR:ns ## COG: ybiN COG3129 # Protein_GI_number: 16128775 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Escherichia coli K12 # 1 308 28 335 335 568 85.0 1e-162 MSPQKPGLHPRNRHNGRYDLATLCQVTPELTQFLTLTPGGEQSVDFANPQAVKALNKALL AHFYAVKNWDIPEGFLCPPVPGRADYIHHLADLLGETTGTIPANASVLDVGVGANCIYPL IGAHEYGWRFTGSETSSEAFNSAQAIVNANPGLTRAIRLRRQKDAASIFNGIIHKNEQYE ATVCNPPFHDSAASARAGSERKRRNLGQDKDDALNFGGQQQELWCEGGEVAFIKKMIAES QAFGRQVMWFTTLVSRGENLPPLYHALTDVGAVKVVKKEMAQGQKQSRFIAWTFMDNDQR RRFMARKR >gi|283548478|gb|GG730299.1| GENE 1879 2039817 - 2040077 387 86 aa, chain + ## HITS:1 COG:no KEGG:EC55989_0850 NR:ns ## KEGG: EC55989_0850 # Name: ybiM # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 86 49 134 134 122 70.0 4e-27 MKKCLTLLAATVLTGMTFASFAAQPNTSPATGQLQASGTVFATGASNLSDLEDKLAEKAK EQGAKGFVVNSAGGKNQMYGSATIYK >gi|283548478|gb|GG730299.1| GENE 1880 2040219 - 2040485 224 88 aa, chain + ## HITS:1 COG:STM0825 KEGG:ns NR:ns ## COG: STM0825 COG1734 # Protein_GI_number: 16764187 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Salmonella typhimurium LT2 # 1 88 1 88 88 141 86.0 3e-34 MASGWANDDAVNEQINNTIEDAVARARGELPTGESLYECEECGNPIPQARRVAVPGVRLC ITCQQDKDSHNSAFSGYNRRGSKDSQLR >gi|283548478|gb|GG730299.1| GENE 1881 2040787 - 2041047 337 86 aa, chain + ## HITS:1 COG:no KEGG:SC0820 NR:ns ## KEGG: SC0820 # Name: ybiJ # Def: hypothetical protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 86 38 123 123 97 87.0 1e-19 MKNIKFAVAAIALSTLSFGVFAAEPVSSTQAQSMNKIGVVSADGATTLDGLEAKLAEKAA AAGATGYNITSAVGNDKMSGTAVIYK >gi|283548478|gb|GG730299.1| GENE 1882 2041146 - 2042231 1222 361 aa, chain - ## HITS:1 COG:ECs0879 KEGG:ns NR:ns ## COG: ECs0879 COG2055 # Protein_GI_number: 15830133 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 359 1 359 361 627 85.0 1e-179 MNSGHRFHVPTLHAFIQAVFHQMGSNEQEARLVADHLIASNLAGHDSHGIGMIPSYIRSF SQGHLQINRHAKVVKDAGAVITLDGDCAFGQVAAHEAITLGIEKARQYGIAAVALHNSHH IGRIGYWAEQCAAAGFVSVHFVNVVGIPMVAPFHGRDSRFGTNPFCVVFPRKNTFPLLLD YATSAIAFGKTRVAWHKGEPVAPGCLIDAEGAPTTDPAVMQVSPLGSLLTFAQHKGYALA AMCEIMGGALSGGKTTHEESLQTSADAIINCMTTIIMNPELFGAPDCDKQVAAFAEWVKA SPHADDAPILLPGEWEVNTRQARMEQGIPLDAGSWQAICEAARQIGMPEDVLQAFRQRLE Q >gi|283548478|gb|GG730299.1| GENE 1883 2042124 - 2042351 102 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIGHQPRFLLVTPHLVKNGLNKGVQRRHMEAMSTVHCYLLLCCVFVVFLIFQQTMLRHGS QEINKRAEISRCYKG >gi|283548478|gb|GG730299.1| GENE 1884 2042393 - 2043361 1276 322 aa, chain - ## HITS:1 COG:STM0822 KEGG:ns NR:ns ## COG: STM0822 COG0547 # Protein_GI_number: 16764185 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Salmonella typhimurium LT2 # 1 322 1 322 324 567 87.0 1e-161 MDYRKIIKEIGRGKNHARDLDKDTARGLYTHMLNGDVPDLEMGGVLIALRIKGEGEAEML GFYEAMQNHTIRLTPPVAKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSED PTRVLTETIFELMGITPTLHAGQAQAKLDGHEPVFIPVSALCPPLEKQLAMRWRMGVRNS AHTLAKLATPFAEDAALRLSSVSHPEYVSRVAKFFSDIGGRGLLMHGTEGEVYANPQRCP QISLIDSSGVRVLQDRQSEMPDEPVPLPVAKDPETTARWIERCLAGSEPVPASLKIQMAC CLVATGESATLAEGLARVGQSF >gi|283548478|gb|GG730299.1| GENE 1885 2043391 - 2045541 2098 716 aa, chain - ## HITS:1 COG:ECs0877 KEGG:ns NR:ns ## COG: ECs0877 COG1199 # Protein_GI_number: 15830131 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Escherichia coli O157:H7 # 1 716 1 716 716 1337 92.0 0 MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLSGEEGRHLAIEAPTGVGK TLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLRKIIPDLRFTAAFGRGRYVC PRNLAALASTEPNQQDLLAFLDDDLTPNNQEEQKRCARLKGDLDTYKWDGLRDHTDIAID DGLWQRLSTDKASCLNRNCHYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPEA KNLLLVLDEGHHLPDVARDALEMSAEISAPWYRLQLDLFCKLVATCLEQFRPKTTPPLAN AERLNGHCEELYELISSLNNILNLYMPATQEAEHRFAMGELPAEVMEICQRLAKLTEMLR GLAELFLNDLSEKTGTHDIVRLHRVILQMNRALGMFEAQSKLWRLASLAQSSGAPVSKWA TREVRDGQIHVWFHCVGIRVSDQLERLLWRSVPHIIVTSATLRSLNSFSRLQEMSGLKEK AGDRFVALDSPFNHVEQGKIVIPQMRYEPLMENEEQHIAEMAAYFREQLESKKHQGMLVL FASGRAMQRFLEHVTDLRLLLLVQGDQPRYRLVELHRNRVQNGERSVLVGLQSFAEGLDL KGDLLTQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPAASFNLIQQVGRLIRS HGCWGEVVIYDKRLLTKNYGKRLLNALPIFPIEQPAVPDVIVKPKEKVKPTRRRRR >gi|283548478|gb|GG730299.1| GENE 1886 2045719 - 2047140 1229 473 aa, chain - ## HITS:1 COG:CAC1590 KEGG:ns NR:ns ## COG: CAC1590 COG0471 # Protein_GI_number: 15894868 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Clostridium acetobutylicum # 12 473 15 476 476 356 42.0 7e-98 MSTNSVAGKSILAFLIPLAIGGMIWFYPVPDGLTPQAWHMFAIFAATIAAILTQPLPSGA VMLIALCVVIFTKTLPEAKALSGFASGTVWLIFCAYVLSLGFVTSGLGKRIAYKMLSLFG GSSLGIAYSLGVSDLIMAPAMPSVTARSGGIIFPITRSINDVLGSAPGVTGKRIGDFLTM VCFQFTPITGAIFLTGMAANPLVASLAKSSLGVEITWGGWFISAVVPAMACFCLMPLLVY KLLDPELKRTPEAKAMGKQALGELGAMSSNEKKVAFGFVLALVGWGTSLITGLSATSVGL GLAAYLFASGAVSWKSLLNDHAAWDTVIWFSVIISLATGLADLGFIKWMTIKLGSGIQGF GAIESFILLGILYIYVHYLFATATGHVAALYAPFAATAIAAGAPPMMVAICFGIFSNLMW GNTEYGGGPGPIYFAQGYFERPRFYKINLCVVTANVIIIFAVGMLWWKLLGYY >gi|283548478|gb|GG730299.1| GENE 1887 2047174 - 2048526 1453 450 aa, chain - ## HITS:1 COG:SPBC8E4.05c KEGG:ns NR:ns ## COG: SPBC8E4.05c COG0015 # Protein_GI_number: 19113634 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Schizosaccharomyces pombe # 1 443 1 444 447 399 45.0 1e-111 MASNVLDSVLFRDSFGTPAMRAVFDDRELVRKYVEVEVALAKAQARCGVIPEAAAQEIAE KCNADTLDFDLLRHETEIVGYPILPLVHQISKQAGESGGYVHWGATTQDIMDTAVVLQIR DAFTLIETDMDKLRATLADLARRYRDTPMAGRTHLQQALPVTFGYKAAIWLDMFERHAER LTQARPRVLVGEFAGAAGTLASLGDKGLAVQKAMMEELGLNVPTSTWHVARDGFAEAVNL LAVITGSLGKIAYDVMLLAANEFGELYEPFVKGRGASSTMPQKRNPISSELMLACAKGVR QQAGLMLDAMVQDLERATGPWHAEWIAIPESFVLSAGALHQANFMLAGLIVDEAAMKRNL GMTNGLIVAEAVMMGLAPYIGRQDAHDVVYDACRIVNEQGGRLADVLNTMPSVSERLDPQ LIEELTDPANYLGMAPAMVDQVLAKYMSQK >gi|283548478|gb|GG730299.1| GENE 1888 2048729 - 2049463 435 244 aa, chain + ## HITS:1 COG:BMEII0116 KEGG:ns NR:ns ## COG: BMEII0116 COG2188 # Protein_GI_number: 17988460 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Brucella melitensis # 5 209 10 211 244 72 29.0 6e-13 MKESLYKRIARELAQQISVGTFAPGSLFPTEMELCETWQVSRHTMREALRELTEQGLISR RKGAGTRVCEPKANGVNHPLSHLEDLLLLAKNNLRVIKKIDEIVADIELSQMIGCPPGSR WLHIASTREDAQNPDAPICWTDSYASTDYAKLRTYIRDDPHSLISDLIETHYGIKSHEVH QTITAVGVPKKMAKILNVAPDSPAMRIVRRYLDREGKVFETTISVHPAGRYTCSIVLKSQ SSGE >gi|283548478|gb|GG730299.1| GENE 1889 2049532 - 2050875 1499 447 aa, chain - ## HITS:1 COG:STM0820 KEGG:ns NR:ns ## COG: STM0820 COG0513 # Protein_GI_number: 16764183 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 1 433 1 440 454 750 93.0 0 MSFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL QHLVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK RQNLLFSATFSDDIKSLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGAGRGQQPRRQDGGAPKA KPRSGEGKPAGDKPRPPRRPRRPSSAQ >gi|283548478|gb|GG730299.1| GENE 1890 2051097 - 2051774 724 225 aa, chain + ## HITS:1 COG:ECs0874 KEGG:ns NR:ns ## COG: ECs0874 COG1309 # Protein_GI_number: 15830128 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 223 5 227 227 384 86.0 1e-107 MNTSTMTTKGEQAKNQLIAAALAQFGEYGLHATTRDIAAQAGQNIAAITYYFGSKEDLYL ACAQWIADFIGSQFRPHAEEAERLFAQPQPDRGAMRELILRACKNMIMLLTQDDTVNLSK FISREQLSPTAAYQLVHDQVINPLHTHLTRLIAAYTGRDADDTQMILHTHAILGEVLAFR LGKETILLRTGWSQFDEDKTTLIEQTVTCHIDLILQGLTQRSLDS >gi|283548478|gb|GG730299.1| GENE 1891 2051771 - 2052766 1096 331 aa, chain + ## HITS:1 COG:STM0818 KEGG:ns NR:ns ## COG: STM0818 COG0845 # Protein_GI_number: 16764181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Salmonella typhimurium LT2 # 1 331 1 331 331 512 87.0 1e-145 MKKPVVLGLVIAALVAVIAGGTWWYQSRQDNGLMLYGNVDIRSVNLSFRVGGRLASLAVD EGDAITAGQVLGELDHAPYENALMQAKANVAAAQAQYDLMLAGYREEEIAQTAAAVKQAQ AAYDYAQNFYNRQIGLWKSRSISANDLENARSSRDQALASLKSAQDKLTQYRSGNRPQDI EQAKATLEQAQAELAQAELNLHDTTLTSPSDGTLLTRAVEPGSMLNEGGTVLTLSLTRPV WVRAYVDERNLSQAQPGREILLYTDGRPDKPYHGKIGFVSPTAEFTPKTVETPDLRTDLV YRLRIVVTDADDALRQGMPVTIKFGDEARHE >gi|283548478|gb|GG730299.1| GENE 1892 2052759 - 2054495 210 578 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 329 546 1 226 245 85 25 1e-14 MNDAVITLNGLMKTFAGMEKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPD AGSAAVIGFDPIKNDSALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEAREKTFA RLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQM VHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGDPTQLTQTMAGRSFLMSSPQE NNRRLLQRVLKLPQVSDGMIQGKSVRLILKKEATARQIQNANGMPEIILNATAPRFEDAF IDLLGGAGTSESPLGAILHTVEGSPDETVIEAKALTKKFGDFAATDHVDFAVQRGEIFGL LGPNGAGKSTTFKMMCGLLVPTSGKALVLDMDLKVSSGKARQHLGYMAQKFSLYGNLTVE QNLRFFSGVYGLRGRAQKEKIDRMSEAFGLKSIASQATDELPLGFKQRLALACSLMHEPD ILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIAS GTPDDLKAKAADSDTPDPTMEQAFITLINDWDKEHAHE >gi|283548478|gb|GG730299.1| GENE 1893 2054488 - 2055621 1382 377 aa, chain + ## HITS:1 COG:STM0816 KEGG:ns NR:ns ## COG: STM0816 COG0842 # Protein_GI_number: 16764179 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Salmonella typhimurium LT2 # 3 377 2 376 376 676 95.0 0 MSNSALSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILL EQQSEEALDFTHTMTGSPYIDATISDNRQELVEKMQAGRIRGLVVIPVDFAQQMARPGDT APIQVITDGSEPNTANFVQGYVEGIWQIWQQQRAEDRGESFEPLIDVQTRYWFNPAAISQ HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEVTRVELLLCKLIPYYFLGML AMLLCMLVSVFILGVPYRGSLLILFFITSLFLLSTLGMGLLISTITRNQFNAAQVALNAA FLPSIMLSGFIFQIDSMPAIIRAVTYIIPARYFVSTLQSLFLAGNIPVVLIINVLFLIAS AVMFIGLTWLKTKRRLD >gi|283548478|gb|GG730299.1| GENE 1894 2055632 - 2056738 1176 368 aa, chain + ## HITS:1 COG:STM0815 KEGG:ns NR:ns ## COG: STM0815 COG0842 # Protein_GI_number: 16764178 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 368 1 368 368 672 97.0 0 MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAVYNEDNGKH SVELTQRFARASAFTHVLLLKSPQEIQPTIDTQKALLLVRFPANFSRNLDTFQQAPMQII LDGRNSNSAQIAANYLQQIVKEYQQELMDGKPKPNNSELVVRNWYNPNLDYKWFVVPSLI AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAI GIWAYHIPFAGSLGLFYFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSG YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLKIVWGSLWPLLVIAATTGSAAY AMFRRKVM >gi|283548478|gb|GG730299.1| GENE 1895 2056700 - 2057110 459 136 aa, chain - ## HITS:1 COG:no KEGG:ROD_07911 NR:ns ## KEGG: ROD_07911 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 136 1 136 136 204 91.0 7e-52 MRWQQRVRVATGLSCWQIVLHLLVVALLVMGWMSGTLVHVGLGLCVVYGVTVLLMLALQR HHEQRWRDVADVLEELTTTWYFGAAMIVLWLLSRVLQNNVLLALAGLVILAGPAVVSLLA KDKKLHHLASKHRIRR >gi|283548478|gb|GG730299.1| GENE 1896 2057243 - 2058004 567 253 aa, chain + ## HITS:1 COG:ECs0868 KEGG:ns NR:ns ## COG: ECs0868 COG3568 # Protein_GI_number: 15830122 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Escherichia coli O157:H7 # 1 253 1 253 253 456 87.0 1e-128 MARPTERFSFNVLTINTHKGFTAFNRRFILPELREAVRTVGADIVCLQEVLGAHEVHPLH VENWPDTTHYEFLADTMWSDFAYGRNAVYPQGHHGNAVLSRYPIEHFENRDVSVGASEKR GVLYCRIVPPMLSHPVHVMCVHLGLREAHRQAQLAMLADWVNALPEGEPVVVAGDFNDWR QKANHPLKANADLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNANASTPTALALRHWRH LSDHAPLSAEIHL >gi|283548478|gb|GG730299.1| GENE 1897 2058001 - 2059242 1071 413 aa, chain + ## HITS:1 COG:STM0812 KEGG:ns NR:ns ## COG: STM0812 COG1502 # Protein_GI_number: 16764175 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Salmonella typhimurium LT2 # 1 412 1 412 413 746 85.0 0 MKYDWREGNQIQLLENGDRYYPAVFDAIEQAQQKIILETFIWFEDAVGKQLHAALLSAAR RGVKAEVLLDGYGSPDLSDSFVNTLTAAGIVFRYYDPRPRLFGMRTNLFRRMHRKIVVID DRVAFVGGINYSAEHMSDYGPEAKQDYAVRVEGPIVADILTFVLENLPGQSAVRRWWRRH HRAIENHRPGEAQVLFVWRDNDEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHAL RKAARRGVRVKLIVQGEPDMPIVKVGARLLYNYLVKGGVHVYEYRRKPLHGKVALMDDHW ATVGSSNLDPLSLSLNLEANLIIHDRTFNQTLRDNLNTIIAQDCKRVDESMLPKRTWWNL TKSVLAFHFLRHFPALVGWLPAHTPRLTEVEPPAQPAMETQDRIQTEDVGGKS >gi|283548478|gb|GG730299.1| GENE 1898 2059242 - 2060204 986 320 aa, chain + ## HITS:1 COG:STM0811 KEGG:ns NR:ns ## COG: STM0811 COG0392 # Protein_GI_number: 16764174 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Salmonella typhimurium LT2 # 1 320 1 320 320 489 89.0 1e-138 MAKAHSRWRLAKKILTWLFFIAVIVLLVIYASKVNWEEVWTVIRDYNRTALLGAVGLAIV SYLLYGCYDLLGRYYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPG STITRIFSLSITTNWLGYILLGGFIFTFGVVELPAHWYIDQGTLRILGVSLLLIIAVYLW FCAFAKHRHITIRGQKLVLPSWKFAVAQMAISSTNWMVMGAIIWLLLGQDINYFFVLGVL LVSSIAGVIVHIPAGIGVLEAVFMALLAGEDTSQGKIIAALLAYRVLYYFIPLLLALICY LLLESRTKKLRAKNEKAMAK >gi|283548478|gb|GG730299.1| GENE 1899 2060288 - 2060992 956 234 aa, chain - ## HITS:1 COG:ybhL KEGG:ns NR:ns ## COG: ybhL COG0670 # Protein_GI_number: 16128754 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli K12 # 1 234 1 234 234 345 89.0 6e-95 MDRFPRSDSIVQARSGLQTYMAQVYGWMTCGLLLTAFIAWYAANSSAFMELLYTNRIFFF GLVIAQLALVFVLSGMIHKLSAGVTTTLFMLYSVLTGLTLSSIFIIYTASSIASTFVVTG GMFGIMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVG LTAYDTQKLKNIGEQIDLRDSSNLRKYAILGALTLYLDFINLFLMLLRIFGNRR >gi|283548478|gb|GG730299.1| GENE 1900 2061034 - 2061486 541 150 aa, chain - ## HITS:1 COG:moaE KEGG:ns NR:ns ## COG: moaE COG0314 # Protein_GI_number: 16128753 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Escherichia coli K12 # 1 150 1 150 150 273 92.0 1e-73 MAETRIVVGHAPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVQALTLEHYPGMTE KALAEIVDEARTRWPLGRVTVIHRIGALWPGDEIVFVGVTSAHRSSAFDAGQFIMDYLKT RAPFWKREATPEGERWVDARDSDKQAAKRW >gi|283548478|gb|GG730299.1| GENE 1901 2061488 - 2061733 332 81 aa, chain - ## HITS:1 COG:STM0805 KEGG:ns NR:ns ## COG: STM0805 COG1977 # Protein_GI_number: 16764168 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Salmonella typhimurium LT2 # 1 81 3 83 83 135 86.0 1e-32 MIKVLFFAQVRELVNTDALEVTAEFPTVEALRQHLAEKGDRWALALEDGKLLAAVNQTLV SFDHPLNAGDEVAFFPPVTGG >gi|283548478|gb|GG730299.1| GENE 1902 2061726 - 2062211 605 161 aa, chain - ## HITS:1 COG:ECs0861 KEGG:ns NR:ns ## COG: ECs0861 COG0315 # Protein_GI_number: 15830115 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Escherichia coli O157:H7 # 1 161 1 161 161 286 96.0 1e-77 MSQLTHINAAGEAHMVDVSGKAETVREARAEAFVTMRSETLAMIIDGSHHKGDVFATARI AGIQAAKRTWDLIPLCHPLMLSKVEVNLHAEPEHDRVRIETLCRLTGKTGVEMEALTAAS VAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVDAHD >gi|283548478|gb|GG730299.1| GENE 1903 2062214 - 2062726 642 170 aa, chain - ## HITS:1 COG:ECs0860 KEGG:ns NR:ns ## COG: ECs0860 COG0521 # Protein_GI_number: 15830114 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Escherichia coli O157:H7 # 1 170 1 170 170 328 95.0 3e-90 MSQVSAEFIPTRIAILTVSNRRGEEDDTSGHYLRDSALEAGHQIVDKAIVKENRYAIRAQ VSAWIASDDVQVVLITGGTGLTDGDQAPEALQPLFDREVEGFGEVFRMLSFEEIGTATLQ SRAIAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTRPCNFHPHLKK >gi|283548478|gb|GG730299.1| GENE 1904 2062746 - 2063735 940 329 aa, chain - ## HITS:1 COG:STM0802 KEGG:ns NR:ns ## COG: STM0802 COG2896 # Protein_GI_number: 16764165 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Salmonella typhimurium LT2 # 1 329 1 329 329 650 94.0 0 MGSQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNNGFLNVDEIRRVTRAFA SLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLARDAAAWRDAGLTAL NVSVDSLDARQFHAITGQDKFQQVMAGIDAAFDAGFEKVKVNTVLMRDVNHHQLDTFLAW IQPRPIQLRFIELMETGEGSSLFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHP DYAGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLFGEGGVNLRDLLEDDAQQSALEERI SAALLEKKQTHFLHQNNTGITQNLSYIGG >gi|283548478|gb|GG730299.1| GENE 1905 2064199 - 2065107 996 302 aa, chain + ## HITS:1 COG:STM0801 KEGG:ns NR:ns ## COG: STM0801 COG0391 # Protein_GI_number: 16764164 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 302 1 302 302 506 91.0 1e-143 MRTRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAW GDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRN LLKVDAHLIPMSELPVDLMAIDDQGHEVYGEVNIDQLTIPPQELMLSPKVPTTREAVEAI AEADLILIGPGSFYTSLMPILLLDEMSQALRRTPAPMVYIGNLGRELSLPAASLTLNDKL AIIEQYVGKKVIDAVVVGPKVDVSAVTDRVVIQEVLEASDIPYRHDRQLLHSALEKAVQS LG >gi|283548478|gb|GG730299.1| GENE 1906 2065200 - 2067221 2527 673 aa, chain - ## HITS:1 COG:ECs0857 KEGG:ns NR:ns ## COG: ECs0857 COG0556 # Protein_GI_number: 15830111 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Escherichia coli O157:H7 # 1 673 1 673 673 1204 95.0 0 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISR YTIYPKTHYVTPRERIVQAMEEIKVELAERRKILLANNKLLEEQRLSQRTQFDLEMMNEL GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLD PVIEVRPVATQVDDLLSEIRTRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG RAARNINGKAILYGDKITASMARAIGETERRREKQQRYNEEHGITPQGLNKKVVDILALG QSIAKTKAKGKGKSRAGAKSDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRD QLHQLRELFIAAS >gi|283548478|gb|GG730299.1| GENE 1907 2067839 - 2068537 623 232 aa, chain - ## HITS:1 COG:bioD KEGG:ns NR:ns ## COG: bioD COG0132 # Protein_GI_number: 16128746 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Escherichia coli K12 # 1 225 1 225 225 349 79.0 2e-96 MTKTYFVTGTDTEVGKTIASCALLQAAGQQGLRAVGYKPVASGSEMTAEGLRNSDALALQ RHSVVAVDYAAINPYTFAEPTSPHIISADEGRPILASVMSAGLRSLEKQADWVLVEGAGG WFTPLSPTLSFSDWVKTEQLPVILVVGVKLGCINHAILTALAVQQAGLTLAGWVANDVTP PGKRHAEYMATLRRVLAAPLLGEIPWLAEEPERASTGRYIDLSVLSLAASVR >gi|283548478|gb|GG730299.1| GENE 1908 2068530 - 2069285 801 251 aa, chain - ## HITS:1 COG:STM0796 KEGG:ns NR:ns ## COG: STM0796 COG0500 # Protein_GI_number: 16764159 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 251 1 251 251 348 76.0 6e-96 MAQVNKQAIAAAFGRAASHYEQHAELQRQSADALLALLDGRTFSRVLDAGCGPGRMSRYW RELGSEVCALDLSAQMLAEAQRHSVAHRYLLADIEAIPQAAATFDLAWSNLAVQWCSDLR GALDELYRVVRPGGTVAFSTLAQGSMPELRQAWRAVDNREHANRFLPVEQLEHALRGWDV KYQTHAVTLWFDDALNAMRSLKGIGATHLHDGREQRVLTRSQLRQLQLAWPCQQGKYPLT YHLFLGVIQRD >gi|283548478|gb|GG730299.1| GENE 1909 2069272 - 2070426 1212 384 aa, chain - ## HITS:1 COG:STM0795 KEGG:ns NR:ns ## COG: STM0795 COG0156 # Protein_GI_number: 16764158 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 384 1 384 385 581 82.0 1e-166 MTWQQKIDDALTARRRADAWRQRYAVTQGAGRWLQADGRQYLNFSSNDYLGLSHHPQIIC AWQQGAARFGVGSGGSGHVSGYSVAHQALEEELAQWLGYDRALLFISGFAANQAVIAALM GKEDRIVADRLSHASLLEAASLSPAVLRRFTHNDSQHLQRLLAAPCPGQQLVVTEGVFSM DGDSAPLAEIHAVAERQGAWLLVDDAHGVGVTGAEGRGSCWRQQVKPELLVVTFGKGFGV SGAAILCSDNVADYLLQFARHLIYSTSMPPAQAQALRAALALIRSREGDERREKLAMLIQ RFRNGVNTPDFTLANSTSAIQPLIVGDNHKALQLADALRQQGCWVTAIRPPTVPAGTARL RLTLTQAHEVQDIDRLLEVLHGAG >gi|283548478|gb|GG730299.1| GENE 1910 2070423 - 2071463 1271 346 aa, chain - ## HITS:1 COG:bioB KEGG:ns NR:ns ## COG: bioB COG0502 # Protein_GI_number: 16128743 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Escherichia coli K12 # 1 346 1 346 346 662 94.0 0 MAHSSRWTMSQVTELFEKPLLDLLFEAQQVHRQHFDPQQVQVSTLLSIKTGACPEDCKYC PQSSRYKTGLETERLMEVEQVLDSARKAKQAGSTRFCMGAAWKNPHERDMPYLEQMVQGV KALGLEACMTLGTLNETQAQRLANAGLDYYNHNLDTSPEFYGNIITTRSYQERLDTLDKV REAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPNEDK DLLLFRKLGLNPQQTAVLAGDNEQQQRLEQALRTPDTDDYYNAATV >gi|283548478|gb|GG730299.1| GENE 1911 2071540 - 2072829 1268 429 aa, chain + ## HITS:1 COG:STM0793 KEGG:ns NR:ns ## COG: STM0793 COG0161 # Protein_GI_number: 16764156 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Salmonella typhimurium LT2 # 1 428 1 428 429 808 89.0 0 MTTDDLAFDQRHIWHPYTSMTSPLPVYPVARAEGCELVLASGERLIDGMSSWWAAIHGYN HPQLNAAMKTQIDAMSHVMFGGITHAPAIALCRQLVAMTPESLECVFLADSGSVAVEVAM KMALQYWQAKGESRQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQS RMDGEWDELDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRIRKMCDREGI LLIADEIATGFGRTGKLFACEHADITPDILCLGKALTGGAMTLSATLTTRQVAETISNGE AGCFMHGPTFMGNPLACAVASASLSLLNTGEWRSQVAAIEAQLRAELAPAADSSWVADVR VLGAIGVIETTQPVNMAALQKFFVEQGVWVRPFGKLIYLMPPYIIQPEQLRRLTQAVNEA VRHATFFSD >gi|283548478|gb|GG730299.1| GENE 1912 2072887 - 2073363 572 158 aa, chain + ## HITS:1 COG:STM0792 KEGG:ns NR:ns ## COG: STM0792 COG1881 # Protein_GI_number: 16764155 # Func_class: R General function prediction only # Function: Phospholipid-binding protein # Organism: Salmonella typhimurium LT2 # 1 158 1 158 158 303 95.0 1e-82 MKLISNDLRDGEKLGHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCFDPDAPTGSG WWHWVVVNLPADTRVLTQGFGSGLVALPDGVIQTRTDFGKAGYGGAAPPKGETHRYIFTV HALDVERIDVDEDASGAMVGFNVHFHSLASASITAMFS >gi|283548478|gb|GG730299.1| GENE 1913 2073459 - 2074979 1698 506 aa, chain - ## HITS:1 COG:STM0791 KEGG:ns NR:ns ## COG: STM0791 COG2986 # Protein_GI_number: 16764154 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Salmonella typhimurium LT2 # 1 506 1 506 506 858 89.0 0 MNTMTLTPGQLTFAQLRDIWQQPVKLRLDAGAIDAINASVACVNNIVAEGRTAYGINTGF GLLAQTRIATEDLQNLQRSLVLSHAAGVGEALDDAMVRLIMVLKINSLARGFSGIRLSVI EALIALVNAEVYSLIPAKGSVGASGDLAPLAHMSLTLLGEGKARWQGEWLPATEALKKAG LEPITLEAKEGLALLNGTQASTAFALRGLMEAQELFASATVCGALTTEAVLGSRRPFDAR IHAARGQRGQIDAAALYRHVLTDSSALSQSHHNCEKVQDPYSLRCQPQVMGACLTQMRQV MDVLLVEANAVSDNPLVFAEEGDVISGGNFHAEPVAMAADNLALAMAEIGALSERRIALM MDKHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSM APAAGRRLWEMAANTRGVIAVEWLAACQGIDLREGLTSSPLLEQARQALREQVAHYTQDR FFAPDIECATELLAQGTLLKLLPEFL >gi|283548478|gb|GG730299.1| GENE 1914 2074981 - 2076666 1907 561 aa, chain - ## HITS:1 COG:YPO4017 KEGG:ns NR:ns ## COG: YPO4017 COG2987 # Protein_GI_number: 16124140 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Yersinia pestis # 2 561 3 562 563 1005 85.0 0 MSHSKYRQQDIRAPRGATLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARD WECYDAIVNALTQLETDETLLIQSGKPVGVFKTHDNAPRVLIANSNLVPHWATWEHFNEL DARGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLSGRWVLTAGLGGMGGA QPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIEKYTREGKAVSIALC ANAADIVPELVKRGVRPDMVTDQTSAHDPLHGYLPSGWRWEEYQAKAVSDPQGTVQAAKR SMATHVEAMLAFHKMGVPTFDYGNNIRQMAKEMGVENAFDFPGFVPAYIRPLFCRGIGPF RWVALSGDPQDIYKTDAKVKEIVADDKHLHHWLDMARERINFQGLPARICWVGLEWRQKL GLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTAS GATWVSLHHGGGVGMGFSQHAGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYDIA VECAVEEGLNLPMVAATQEKR >gi|283548478|gb|GG730299.1| GENE 1915 2076831 - 2077550 819 239 aa, chain - ## HITS:1 COG:STM0789 KEGG:ns NR:ns ## COG: STM0789 COG2188 # Protein_GI_number: 16764153 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 4 239 6 241 241 394 83.0 1e-110 MLPSRSAPAPFYEKVKQEISEKIASGIWQAHDRIPSEAELVAQYGFSRMTINRALRELTD EGLLVRLQGVGTFVAEPKGQSALFEIRSIADEINARQHQHRCQVLTLERTQANAQQALVL NVKEGTSIYHSVMVHYENDLPVQIEDRCVNAEIVPEYLAQDYSQTTPHAYLSLIAPLTEG EHIVEAVRASAEECALLNIKEHDPCLLIRRKTWSASSIVSHARLLFPGSRYRLQGRFMS >gi|283548478|gb|GG730299.1| GENE 1916 2077637 - 2078578 844 313 aa, chain - ## HITS:1 COG:STM0788 KEGG:ns NR:ns ## COG: STM0788 COG0010 # Protein_GI_number: 16764152 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Salmonella typhimurium LT2 # 1 312 1 312 313 479 79.0 1e-135 MSHWQPASPALWQGRDDRAESPTALRLFQTITLSPAFSPELYHQQIALLGFACDEGVKRN QGRTGAAGAPDALRKALANLASHDGHHRLVDLGNIVAQAPDLEGAQQALRKAVQRCQQEN MRTFVLGGGHETAFAHGAGVLDAFPQAKVGIINLDAHLDLRHADQATSGTPFRQLAHLCD EQQRGFHYACIGVSRAANTQALWDEAQRLGVTVVEDLHCDTAQAQIAQFASGVDVIYLTI DLDVLPVWEMPAVSAPAALGVPLATLLRLIEPLCRSGKLQAVDMVEFNPRFDDDGRAARV AARLGWQIAHWWL >gi|283548478|gb|GG730299.1| GENE 1917 2078575 - 2079798 973 407 aa, chain - ## HITS:1 COG:STM0787 KEGG:ns NR:ns ## COG: STM0787 COG1228 # Protein_GI_number: 16764151 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Salmonella typhimurium LT2 # 1 407 1 407 407 668 79.0 0 MQQFFPDDVIWRNVRLATMDPERDNPYGLVDGHALIVRQGKIRAIVPESSLYLTHDNTFD MQGRLVTPGLIDCHTHLVFGGNRAGEWEQRLNGVSYQQISAQGGGINATVSATRRATDEQ LFHVAHQRMERLIKEGVTLLEIKSGYGLDLQTEEKILRVAAALAAENVIEISPTLLAAHA TPAEYRGDPDGYITLVCETILPQLWEQGLFETVDLFCESVGFTLAQSERVFQAAQALGIP VKGHVEQLSLLGGAQLVSRYHGLSADHIEYLDEAGVAAMSQSGTVGVLLPGAFYFLKEQQ RPPVALLRQYQVPMAVATDFNPGTSPFISLHWAMNMACVQFGLTPEEAWAGVTRHAARAL GRHATHGQLKAGFVADFVVWDAELPVEILYEPGRNPLYQRVFKGQLS >gi|283548478|gb|GG730299.1| GENE 1918 2079992 - 2081305 1411 437 aa, chain + ## HITS:1 COG:STM0786 KEGG:ns NR:ns ## COG: STM0786 COG4677 # Protein_GI_number: 16764150 # Func_class: G Carbohydrate transport and metabolism # Function: Pectin methylesterase # Organism: Salmonella typhimurium LT2 # 11 437 1 427 427 738 88.0 0 MDNFQSPEQPVNISSVSRLALAMAFGVTLTACSSTPPDQKPSDQTAPGTSSRPILSANEA KNFVAAHYFSALTPNTAPWSPSAISLPAQPDFVVGPAGAQGVTHTSIQAAVDAAIVKRTN KRQYIAIMPGEYQGTVYIPAATGSLTLYGTGEKPLDVKIGQAIDGDMSTADWRHTVNPGG KYMPGKPAWYMFDNCQNKRGANIGVMCSAVVWSQNNGLQLQNLTIENNLGDSVDAGNHPA VALRTDGDKVQINNVNILGRQNTFFVTNSGVQNRLENDRQPRTLVTNSYIEGDVDIVSGR GAVVFDNTDFRVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFTASGDGVAQLGRSLDVD SNTNGQVVIRDSVINEGFNMAKPWADSVISKHPFTGNTGAEDDKGEIQRNLNDTNFNRMW EYNNRGIGSKVVAEPKQ >gi|283548478|gb|GG730299.1| GENE 1919 2081403 - 2083664 2091 753 aa, chain - ## HITS:1 COG:ybhJ KEGG:ns NR:ns ## COG: ybhJ COG1048 # Protein_GI_number: 16128739 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Escherichia coli K12 # 1 751 9 759 761 1365 87.0 0 MIKLYEKGIYLSGNNEIIAEENLPEYICKEEAKKGTIAWSILAAHNTSGDMNKLKIKFDS LTSHDITFVGIIQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHMFGLSAAQRYGG IFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDI DYPGVVAVYLTGKPAAGVGPQDVALAIIGAVFKNGFVKNKVMEFVGPGISHLSTDFRNSV DVMTTETTCLSSVWQTDDETRSWLALHGREQDYRQLNPQPMAWYDGCIYVDLSAIKPMIA LPFHPSNVYEIATLNENLTDILREVEIESSRIAQGKASLSLLDKVENGRLKVQQGIIAGC SGGNYENVIAAAQALHGQSCGSDAFSLSVYPSSQPVFMDLAQKGVVADLLGAGAIIRTAF CGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPGNGQMSAVALMDARSIAATAASGGYLT AATELDCWDTVPDYAFNPAPYKNRVYQGYVKGATQQPLIYGPNIKDWPDMGALTENILLK VASKILDDVTTTDELIPSGETSSYRSNPLGLAEFTLSRRDPGYVARSKAAAGLEKRRLAG DVSELAPVFERIRQIAGHENVQPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIA QEYATKRYRSNVINWGMLPLQMAEKPTFDVGDYIYIPGIRRALDECSSAIDAYVLHEDGR VSEISLYMESLTAEEREIIKAGSLINFNKARLA >gi|283548478|gb|GG730299.1| GENE 1920 2083728 - 2085161 1281 477 aa, chain - ## HITS:1 COG:ybhI KEGG:ns NR:ns ## COG: ybhI COG0471 # Protein_GI_number: 16128738 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1 477 1 477 477 748 90.0 0 MNVKSLWKLILILVIPCIIGFLPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIA VAASMVIVGNLGHGVLKTSSVLSGYASGTTWLVFSAFTLSAAFVTTGLGKRIAYILIGKI GNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPDKSPRRVGHYLM MTVYMVTKTTSYMFFTAMAGNILALKMINDICHLQLSWGAWALAASLPGLVMLVVTPLAI YFMYPPEIKKVDNKTIAKAGLEDLGPMKVREKMLLGIFVLALLGWIFSKTLGVDESTVAI VVMGMMLLLGVVTWDDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFDWLAELFKNNLDFG NHGNVAFFVILFLSIIVRYFFASGSAYIVAMMPVFAMLANVSGAPLMLTALALLFSNSYG GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAMLTFLTFLVHITLGIWWWNMLIGWNML >gi|283548478|gb|GG730299.1| GENE 1921 2085244 - 2086296 780 350 aa, chain - ## HITS:1 COG:ECs0797 KEGG:ns NR:ns ## COG: ECs0797 COG2828 # Protein_GI_number: 15830051 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 350 1 350 350 566 80.0 1e-161 MKKIPCVMMRGGTSRGAFLLAQDLPQEETLRDEVLIGIMGSGNALEIDGIGGGNPLTSKV AIISRSNDPQADIDYLFAQVLVHEKRVDTTPNCGNMLSAVGAFAIEKGLIAASAPTTRVR IRNVNTNTFIEADIQTPHGVVEYEGTARIDGVPGTSAPIALTFLNAAGSKTGHIFPTGQQ IDYFDSVPVTCMDMATPVVIIPAEYLGKTGYELPEDLDADSELLSRVESIRLQAGQAMGL GDVSNKVIPKPILISSARNGGAINVRYFMPHSCHKALAITGAIAIASSCAINGTVTRQVT AGAQYGNITIEHPGGVLDIYLTNEGDEPSTIRASVIRTARKIFAGDVYLP >gi|283548478|gb|GG730299.1| GENE 1922 2086596 - 2087408 481 270 aa, chain + ## HITS:1 COG:ybhD KEGG:ns NR:ns ## COG: ybhD COG0583 # Protein_GI_number: 16128736 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 270 62 330 338 475 82.0 1e-134 MEEYLHTPLFERTTRKVALTKAGKMLLPQARDLIRSLDETIFNISEMNTHHHHGMVTLSC IPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNEADFGINMNNITNASIDF TPLVNEPFVLACRRDHPLANKQLVEWQELLQYKLIGVRPSSGNRLLIEQHLADKPWKLDW FYEVRHLSTSLGLVEAGLGVSALPGLAMPQTPHPTLIGIPLIEPVIRRTMGVIRRKDAVL SPPAERFFSLLLNLWAEEKDNLWTTVAEHQ >gi|283548478|gb|GG730299.1| GENE 1923 2087487 - 2088482 1039 331 aa, chain - ## HITS:1 COG:ybhE KEGG:ns NR:ns ## COG: ybhE COG2706 # Protein_GI_number: 16128735 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Escherichia coli K12 # 1 331 1 331 331 644 93.0 0 MKQTVYTASPESQQIHVWSLNHEGSLTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRV LAYRIAPDDGALTFVAESALPGSPTHISTDHKGRFVFVGSYNAGSVSVTRLEDGLPVALV DVVEGLDGCHSANISPDNRILWVPALKQDRICLFDVSEDGHLVAQEPAEVTTVEGAGPRH MVFHPNKQYAYCVNELNSSVDVWELKDPHGKIECVQTLDMMPTDFSDTRWAADIHITPDG RHLYACDRTASLITVFSVSEDGSVLTKEGFQPTETQPRGFNIDHSGKYLIAAGQKSHHIA VYEIAGEQGLLTEKGRYAVGQGPMWVVVNAY >gi|283548478|gb|GG730299.1| GENE 1924 2088647 - 2089465 950 272 aa, chain + ## HITS:1 COG:STM0784 KEGG:ns NR:ns ## COG: STM0784 COG0561 # Protein_GI_number: 16764148 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 272 1 272 272 518 90.0 1e-147 MTARVIALDLDGTLLTPKKTLLPSSLEALSRAREAGYQLIIVTGRHHVAIHPFYQALALD TPAICCNGTYLYDYQAKKVLESDPLPVDQALQLIDLLDEHQIHGLMYVDNAMLYERPTGH VVRTANWAQTLPPEQRPTFTQVSSLAQAARDVNAVWKFALTDEDIPKLQQFGKHVEQQLG LECEWSWHDQVDIARKGNSKGRRLTRWIEAQGGTMENVIAFGDNFNDISMLEAAGTGVAM GNADDAVKARANIVIGDNTTDSIAKFIYTHLL >gi|283548478|gb|GG730299.1| GENE 1925 2089466 - 2090524 1231 352 aa, chain - ## HITS:1 COG:STM0783 KEGG:ns NR:ns ## COG: STM0783 COG4148 # Protein_GI_number: 16764147 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 352 1 352 352 636 94.0 0 MLELNFSQTLGTHCLALNETLPASGITAIFGVSGAGKTSLINAISGLTQPQSGRIVLNGR VLNDVENGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMTGQFDKLVALLGIEQ LLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLAREINI PMLYVSHSLDEILHLADKVMVLENGQVKAFGSLEDVWGSSVMHPWLPKEQQSSILKVSVL EHHPHYAMTALALGDQHLWVNKLEQPLQSVLRIRIQASDVSLVLQPPQQTSIRNILRAKV AQCYDDHGQVEVQLEVGGKTLWARISPWARDELGIKPGLWLYAQIKSVSITA >gi|283548478|gb|GG730299.1| GENE 1926 2090527 - 2091216 693 229 aa, chain - ## HITS:1 COG:STM0782 KEGG:ns NR:ns ## COG: STM0782 COG4149 # Protein_GI_number: 16764146 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 357 96.0 1e-98 MILTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCRFPGKALLDSVLHLPLVLPPV VVGYLLLVAMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDV KLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRT IPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISRERTGR >gi|283548478|gb|GG730299.1| GENE 1927 2091216 - 2091989 983 257 aa, chain - ## HITS:1 COG:ECs0791 KEGG:ns NR:ns ## COG: ECs0791 COG0725 # Protein_GI_number: 15830045 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 257 1 257 257 435 92.0 1e-122 MARTWLRLFAGATLSLSVAGYALADEGKITVFAAASLTNAMQDIATQYKKEKNVDVVSSF ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKSMDTATRATLLGNSLVVVAPKASAQQ EFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLAPKLAPAEDVRGAL ALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAIVDGHKNATVSAFYDYL KGPQAAEIFKRYGFTTK >gi|283548478|gb|GG730299.1| GENE 1928 2092189 - 2092338 155 49 aa, chain - ## HITS:1 COG:no KEGG:EFER_2347 NR:ns ## KEGG: EFER_2347 # Name: not_defined # Def: outer membrane or exported # Organism: E.fergusonii # Pathway: not_defined # 1 49 35 83 83 88 97.0 7e-17 MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGIGQKDQSRQNH >gi|283548478|gb|GG730299.1| GENE 1929 2092469 - 2093257 838 262 aa, chain + ## HITS:1 COG:ECs0789 KEGG:ns NR:ns ## COG: ECs0789 COG2005 # Protein_GI_number: 15830043 # Func_class: R General function prediction only # Function: N-terminal domain of molybdenum-binding protein # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 402 90.0 1e-112 MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSE QTLVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISR FSLQTSARNQWFGTITARDHDQVQQHVDVLLADGETRLKVAITAQSGERLGLEEGKEVLI LLKAPWVGITQDDAIAQAADNQLHGTVSHIERGAQQCEVLMTLPDGQTLCATLPVEQTHA LAEGAQATAYFNADKVIIATLC >gi|283548478|gb|GG730299.1| GENE 1930 2093325 - 2094797 177 490 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 261 465 5 199 311 72 28 7e-11 MSSLQISQGTFRLSDTKTLQLDALTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGER HCQFTRITRLSFEQLQKLVSDEWQRNNTDLLSPGEDDTGRTTAEIIQDEVNDPTRCAALA QQFGISALLNRRFKYLSTGETRKTLLCQALMSAPDLLILDEPFDGLDVASRRQLAELLAD LHQSGFTLVLVLNRFDEIPAFVQFAGVLADCTLTETGAKADLLQQALIAQLAHSERLEGI QLPEPDEPSVRRTLSDNAPRIVLNDGVVSYNDRPILHHLTWQVNPGEHWQIVGPNGAGKS TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVIL SGYFDSIGIYQAVSDRQHKLVQRWLDILGMDKRTADAPFHSLSWGQQRLALIVRALVKHP TLLILDEPLQGLDPLNRQLIRRFVDVLIGEGETQLLFVSHHAEDAPACITHRLEFVPDGD IYAYRQTSLR >gi|283548478|gb|GG730299.1| GENE 1931 2095015 - 2096031 1084 338 aa, chain + ## HITS:1 COG:STM0776 KEGG:ns NR:ns ## COG: STM0776 COG1087 # Protein_GI_number: 16764140 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Salmonella typhimurium LT2 # 1 338 1 338 338 682 95.0 0 MRVLVTGGSGYIGSHTCVQLLKNGHEVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR NEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVNAMRAANVKNFI FSSSATVYGDQPQIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAIFGNDYPTEDGTGVRDYIHVMDLA DGHVAAMEKLAGKQGVHIYNLGAGIGSSVLDVVNAFSKACGKPVNYHFAPRRDGDLPAYW ADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYSD >gi|283548478|gb|GG730299.1| GENE 1932 2096041 - 2097087 1050 348 aa, chain + ## HITS:1 COG:galT KEGG:ns NR:ns ## COG: galT COG1085 # Protein_GI_number: 16128726 # Func_class: C Energy production and conversion # Function: Galactose-1-phosphate uridylyltransferase # Organism: Escherichia coli K12 # 1 348 1 348 348 685 95.0 0 MTQFNPVDRPHRRFNPLTGQWILVSPHRAKRPWQGAQETPSKQVLPAHDPDCFLCAGNTR VTGDKNPDYTGTYVFTNDFAALMSDTPDAPDSHDPLMRCQSARGTSRVICFSPDHSKTLP ELSVPALTEIVKTWQEQTADLGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAE REDRLQKAYFAEQGAPMLIDYVRRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAH VLRMTDLTDEQRADLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY PPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDIHFRESGV >gi|283548478|gb|GG730299.1| GENE 1933 2097091 - 2098239 1390 382 aa, chain + ## HITS:1 COG:STM0774 KEGG:ns NR:ns ## COG: STM0774 COG0153 # Protein_GI_number: 16764138 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Salmonella typhimurium LT2 # 1 382 1 382 382 724 92.0 0 MSLKEKTQSLFAETFGYPATHIIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAARD DRKVRVIAADYDNQMDEFSLDAPIIAHDSQQWSNYVRGVVKHLQKRNNAFGGADLVISGN VPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISAL GKKDHALLIDCRTLGTKAVSMPEGVAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQP ALRDVSFETFSAVAHELDPIVAKRVRHVITENARTVEAANALEKGDLLRMGQLMAESHAS MRDDFEITVPQIDTLVEIVKATIGDKGGVRMTGGGFGGCIVALIPQDLVPAVQQAVAEQY EAKTGIKETFYVCKPSQGAGQC >gi|283548478|gb|GG730299.1| GENE 1934 2098233 - 2099273 921 346 aa, chain + ## HITS:1 COG:STM0773 KEGG:ns NR:ns ## COG: STM0773 COG2017 # Protein_GI_number: 16764137 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 345 1 345 346 629 87.0 1e-180 MLNEIPVMAPDGQPFRLLTLRNDAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPE QYLEQAAFLGASIGRYANRIANSRYTFDGETIELLPSQGDNQLHGGPDGFDKRRWQIVNQ NDRQVLFALTSDDGDQGFPGNLCATAQYRLTDDNRISITYRATVDKPCPVNLTNHVYFNL DGDKTDVRQHKLQILADEYLPVDEMGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRK VKGYDHAFLLQAQGNARTPVARVWSQDEKLQMVVYTSAPALQFYSGNFLGGTPSRGPDAY EDWQGLALESEFLPDSPNHPEWSQPDCFLRPGEEYASVTEYQFIPA >gi|283548478|gb|GG730299.1| GENE 1935 2099507 - 2100259 1198 250 aa, chain + ## HITS:1 COG:STM0772 KEGG:ns NR:ns ## COG: STM0772 COG0588 # Protein_GI_number: 16764136 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Salmonella typhimurium LT2 # 1 250 1 250 250 468 97.0 1e-132 MAVTKLVLVRHGESQWNNENRFTGWYDVDLSEKGVGEAKAAGKLLKEEGYSFDFAYTSVL KRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFA VTPPELTKDDERYPGHDPRYAKLTDKELPVTESLALTIDRVIPYWNETILPRMKSGERVI IAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEFDENFKPLKHYYLGNADEIAAKA AAVANQGKAK >gi|283548478|gb|GG730299.1| GENE 1936 2100367 - 2101419 1243 350 aa, chain - ## HITS:1 COG:STM0760 KEGG:ns NR:ns ## COG: STM0760 COG0722 # Protein_GI_number: 16764125 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Salmonella typhimurium LT2 # 1 350 1 350 350 675 93.0 0 MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVAHARKAIHKILKGSDDRLLVVIGP CSIHDPAAAKEYAARLLALREELNGELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQIN DGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLS CPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPN YSAQHVADVKEGLVKAGLAPQVMIDFSHANSSKQFKKQMDVAKDVCGQVAGGEKAIIGVM IESHLVEGNQNPDSGESLTYGKSITDACIGWEDTDAVLRQLADAVKARRG >gi|283548478|gb|GG730299.1| GENE 1937 2101736 - 2102110 322 124 aa, chain + ## HITS:1 COG:no KEGG:CKO_02387 NR:ns ## KEGG: CKO_02387 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 124 1 124 124 149 83.0 4e-35 MHMTKLTSLFLTATLSLASGAALAAETNAQSNNGQANSSADAGQVAPDARENVAPNNVDN NNVNSGGTMLHPNGSSMNHEGMTKDEMHKNTMCKDGRCPDVNKKVETGNGVNNDADTKTD GTTQ >gi|283548478|gb|GG730299.1| GENE 1938 2102224 - 2103165 736 313 aa, chain + ## HITS:1 COG:STM0758 KEGG:ns NR:ns ## COG: STM0758 COG1230 # Protein_GI_number: 16764123 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Salmonella typhimurium LT2 # 1 312 1 312 312 496 88.0 1e-140 MAHSHTHTSPEQPKDNNARRLLFAFCITAGFMLLEVVGGILSGSLALLADAGHMLTDAAA LLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFHTPRPVA GGMMMIIAVAGLLANVLAFWVLHRGSEEKNLNVRAAALHVMGDLLGSVGAIIAALIIIWT GWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPVALDIAALQRHLSRDIPEVRNVH HVHVWMVGEKPVMTLHVQVVPPHDHDALLERIQHFLIHHYQIEHATIQMEYQPCNGPDCH LYQGVSGHAHHHH >gi|283548478|gb|GG730299.1| GENE 1939 2103162 - 2103881 800 239 aa, chain - ## HITS:1 COG:ECs0779 KEGG:ns NR:ns ## COG: ECs0779 COG3201 # Protein_GI_number: 15830033 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 380 92.0 1e-105 MDFFSTQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEKISNYVFGLINVTLFAI IFFQIQLYASLLLQVFFFAANIYGWYAWSRQTNQHEAELKIRWLPLPKAIGWLAACVVAI GLMSVYIDPVFAFLTRIAVNIMQGLGLQVAAPELQPDAFPFWDSCMMVLSIVAMILMTRK YVENWLLWVIINVISVVIFALQGVYAMSLEYMILTVIALNGSRMWINSARERGSHALSH >gi|283548478|gb|GG730299.1| GENE 1940 2103909 - 2104952 805 347 aa, chain - ## HITS:1 COG:STM0756 KEGG:ns NR:ns ## COG: STM0756 COG0379 # Protein_GI_number: 16764121 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Salmonella typhimurium LT2 # 1 347 1 347 347 654 93.0 0 MSVMFDPEAAIYPFPPKPAPLSVDEKQFYREKIKRLLKERDAVMVAHYYTDPEIQQLAEE TGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCP IDAFSAFCDAHSDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDSLGEKIIWAPDRH LGNYVQKQTGADVLCWQGACIVHDEFKTQALTRMKGLYPDAAILVHPESPQSIVDMADAV GSTSQLINAAKSLPHQQLIVATDRGIFYKMQQAVPEKELLEAPTAGEGATCRSCAHCPWM AMNGLKAIAEGLEQGGAAHEIHVDAALRKGALLPLNRMLEFAATLRA >gi|283548478|gb|GG730299.1| GENE 1941 2106166 - 2106954 629 262 aa, chain - ## HITS:1 COG:ECs0777 KEGG:ns NR:ns ## COG: ECs0777 COG1729 # Protein_GI_number: 15830031 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 262 1 263 263 344 88.0 9e-95 MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQ QQLSDNQTDIDSLRGQIQENQYQLNQVVERQKQILLQMSNLSGTSAPAAQSAGGDQSGAA TPAPDAGAAATSGAPAQTGDANTDYNAAIALVQDKSRQDDAIEAFQNFIKKYPDSTYLPN ANYWLGQLNYNKGKKDDAAFYFASVVKNYPKSPKAADAMYKVGVIMQDKGDTAKAKAVYQ QVITKYPGTDGAKQAQKRLSAM >gi|283548478|gb|GG730299.1| GENE 1942 2106964 - 2107482 613 172 aa, chain - ## HITS:1 COG:ECs0776 KEGG:ns NR:ns ## COG: ECs0776 COG2885 # Protein_GI_number: 15830030 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 1 172 1 173 173 285 98.0 3e-77 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGSGNMSSEEQARLQ MQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISL GERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY >gi|283548478|gb|GG730299.1| GENE 1943 2107517 - 2108809 1309 430 aa, chain - ## HITS:1 COG:STM0748 KEGG:ns NR:ns ## COG: STM0748 COG0823 # Protein_GI_number: 16764118 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic component of the Tol biopolymer transport system # Organism: Salmonella typhimurium LT2 # 1 430 1 430 430 796 96.0 0 MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKWAGPGAAPEDIGGIVGA DLRNSGKFNPLDRSRLPQQPGTAAEVQPAAWSALGIDAVVVGQVTPNPDGSYSVAYQLVD TGGAPGTVLAQNTYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPY ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQ NLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQDADVSSDGKFMVMVSSANGQQHIAK QDLVAGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ VKFPAWSPYL >gi|283548478|gb|GG730299.1| GENE 1944 2108938 - 2110140 1002 400 aa, chain - ## HITS:1 COG:STM0747 KEGG:ns NR:ns ## COG: STM0747 COG3064 # Protein_GI_number: 16764117 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane protein involved in colicin uptake # Organism: Salmonella typhimurium LT2 # 1 400 1 407 407 238 68.0 2e-62 MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDEHIDASAGGGGGSSIDAVMVDPGAV VQQYDRQQQQQASAKRAEEQREKQAQQQAEELREKQAAEQERLKQLEKERLAAQEKVREQ AEQQKLAEAAAAKAQEQQKQAEEAAAKAAADAKAKADAQAKKAAADAQKKAEAEAAKAAA DAKKVAEAQAAKAAADAAKKAQAEAAKQAAAEKAAAEKAEKAAAAKAAAAEKAAADKKAA AEKAAADKKAAADKAAAAKKAAAEKAAAAAGVDDLLGDLSSGKNAPKSGGGAKGSGQPSK DSGTSGANGGATGADISAYARQIQLAIQSRLFDAGLYQGKQCVLHINLGADGTLKSVTSE GGDPALCQAALAAARSANIPKPPSQAVYEKIKDAKLDFKL >gi|283548478|gb|GG730299.1| GENE 1945 2110205 - 2110633 502 142 aa, chain - ## HITS:1 COG:STM0746 KEGG:ns NR:ns ## COG: STM0746 COG0848 # Protein_GI_number: 16764116 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Salmonella typhimurium LT2 # 1 142 1 142 142 210 92.0 6e-55 MARTRGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSND EPPVIIEVSGVGQYSVVVEKDRMDQLPPEQVIAEAKSRLQTNPKTVFLIGGAKDVPYDEI IKALNLLHSAGVKSVGLMTQPI >gi|283548478|gb|GG730299.1| GENE 1946 2110637 - 2111320 859 227 aa, chain - ## HITS:1 COG:STM0745 KEGG:ns NR:ns ## COG: STM0745 COG0811 # Protein_GI_number: 16764115 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Salmonella typhimurium LT2 # 1 227 4 230 230 405 98.0 1e-113 MNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAASREAEAFEDKFWSGIELS RLYQESQGRRDNLAGSEQIFYSGFKEFARLHRANSHAPEAVVEGASRAMRISMNRELETL ETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLF AAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTVSESNKG >gi|283548478|gb|GG730299.1| GENE 1947 2111326 - 2111730 378 134 aa, chain - ## HITS:1 COG:STM0744 KEGG:ns NR:ns ## COG: STM0744 COG0824 # Protein_GI_number: 16764114 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Salmonella typhimurium LT2 # 1 134 1 134 134 249 97.0 1e-66 MNKYMFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLAERVAFVVR KMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVNAENTVLNEAEVLIVCVDPLKMK PRALPKSIVAEFKQ >gi|283548478|gb|GG730299.1| GENE 1948 2111994 - 2112287 259 97 aa, chain - ## HITS:1 COG:ECs0770 KEGG:ns NR:ns ## COG: ECs0770 COG3790 # Protein_GI_number: 15830024 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 97 1 97 97 151 82.0 2e-37 MTNIIAMLYNAMDKRPLRALSFVLAIVLAGCIFWDPSRFAAKTSELEIWHGFLLMWAVCA GIIHGVGFRPRAVHWQGIFCPLIADIVLVVGLFFFFF >gi|283548478|gb|GG730299.1| GENE 1949 2112287 - 2112400 112 37 aa, chain - ## HITS:1 COG:STM0742 KEGG:ns NR:ns ## COG: STM0742 COG4890 # Protein_GI_number: 16764112 # Func_class: S Function unknown # Function: Predicted outer membrane lipoprotein # Organism: Salmonella typhimurium LT2 # 1 37 1 37 37 59 91.0 2e-09 MWYFAWILGTLLACAFGIITALALEHVESGKAGQEDS >gi|283548478|gb|GG730299.1| GENE 1950 2112415 - 2113554 1475 379 aa, chain - ## HITS:1 COG:STM0741 KEGG:ns NR:ns ## COG: STM0741 COG1294 # Protein_GI_number: 16764111 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 379 1 379 379 682 96.0 0 MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDMRWRNMWD WGIFIGSFVPPLVIGVAFGNLLQGVPFHVDEYMRLYYTGNFFQLLNPFGLLAGIVSVGMI ITQGATYLQMRTVGELHLRARATSQVAALVTLVCFALAGVWVIYGIDGYVVTSALDHHAA SNPLTKEVARVAGAWMVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFVFSSLTLA CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQRTLNLMTWVAVVFVPIILLYTGWCYW KMFGRITKEDIESNTHSLY >gi|283548478|gb|GG730299.1| GENE 1951 2113570 - 2115138 1924 522 aa, chain - ## HITS:1 COG:STM0740 KEGG:ns NR:ns ## COG: STM0740 COG1271 # Protein_GI_number: 16764110 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 1 522 1 522 522 981 94.0 0 MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR LGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFNFETMRMEMLSFSELVLNPVA QVKFVHTVASGYVCGAMFVLGISSYYMLRGRDFAFAKRSFAIAASFGMAAILSVIVLGDE SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDAQENHFAIQIPYALGIIATRSV DTPVIGLKDLMVQHEERIRNGMKAYQLLEELRAGTTDQAVRDQFNSMKKDLGYGLLLKRY TDKVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGILMLAIIAASFWTVIRNRIGEKK WLLRTALYAIPLPWIAIESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLICG LYTLFLVAELYLMFKFARLGPSSLKTGRYHYEQSTVTSQPAR >gi|283548478|gb|GG730299.1| GENE 1952 2116357 - 2116806 524 149 aa, chain + ## HITS:1 COG:Z0895 KEGG:ns NR:ns ## COG: Z0895 COG2185 # Protein_GI_number: 15800444 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) # Organism: Escherichia coli O157:H7 EDL933 # 1 149 22 170 170 254 87.0 4e-68 MKKSTLVIGVIGADCHAVGNKVLDRVFTAHDFHVINLGVMVSQDEYIDAAIETGADAIVV SSIYGHGDIDCLGLRERCIERGLGDILLYVGGNLVVGKHDFADVEVKFKEMGFNRVFAPS HDLEDVCALIANDIRQHNGLEQRCLEEAI >gi|283548478|gb|GG730299.1| GENE 1953 2116806 - 2118200 1112 464 aa, chain + ## HITS:1 COG:no KEGG:CKO_02417 NR:ns ## KEGG: CKO_02417 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 462 1 462 462 880 91.0 0 MQTVSVDIGSTWTKAALFAQEGEELTLVNHVLTPTTTHHLADGFFASLNQVLNVADARPL LKSGEVQLKYSSSAKGGLAVAAMGLVPSITLESAKVTAHSAGAKIAQYYSYKLNRHDIQE LESSPPDILLFTGGTDGGEESYGLANARALAGSKLDCAIIYAGNRDIQDEIQTILGHKDL TTVDNILPDLDHPNPFAARQAICDVFLSRIVKGKGLDVIVGETGEEPMPTPWTVYELVKA ISDYDNAWKEFMLIDMGGATTDVYSASANTLSPDTVLHGVPEPFVKRTVEGDLGMRVSAV VVGESTQDMVKVIFAQQPQREEAFYRYLRHLVGQPDYLPLSEEEKYFDTLLAGLCVGYAA ERHAGTKKQVCTCVGNVDLQMGRDLTTVRKVVGSGGWLSRASQFDIHNWLKYRELDDQGK RILLPNQFEYYRDSNGLLPLLANVARLYPQAAARTSIQCLTLQN >gi|283548478|gb|GG730299.1| GENE 1954 2118213 - 2119658 1567 481 aa, chain + ## HITS:1 COG:ECs0762 KEGG:ns NR:ns ## COG: ECs0762 COG4865 # Protein_GI_number: 15830016 # Func_class: E Amino acid transport and metabolism # Function: Glutamate mutase epsilon subunit # Organism: Escherichia coli O157:H7 # 1 481 1 481 481 911 90.0 0 MELRNKKLTHDEFMTERHQVLQTWETGKDVENFEDGVKYQQSIPDKKRFSLALLKADQEG RTLSQPRAGVALMDEHIELLKTLQEECDLLPSTIDAYTRLNRYEEAAVGIQKSIEAGTSK LNGLPVVNHGVAACRRMTESLEKPIQVRHGTPDARLLAEIAMASGFTSYEGGGISYNIPY AKRVTLEKSIRDWQYCDRLMGLYEENGIRINREPFGPLTGTLIPPFMSHAVAIIEGLLAL EQGVKSITVGYGQVGSLTQDIAAIQALRELSHEYFHNHGFDDYELSTVFHQWMGGFPEDE AKAFSVIAWGAAVAGMSGATKVITKSPHEAFGIPTAAANAQGLKASRQMLNMVSDQKFPQ CAAVEQEVELIKSEVRAVLKKVFELGNGDIARGTVLAFEAGVLDVPFAPAACNAGKILPV RDNTGAIRILEAGAVPLPKDILALHHDYVAERAHFEGRKPSFQMVIDDINAVSHSKLIGR P >gi|283548478|gb|GG730299.1| GENE 1955 2119658 - 2120899 1473 413 aa, chain + ## HITS:1 COG:ECs0761 KEGG:ns NR:ns ## COG: ECs0761 COG3799 # Protein_GI_number: 15830015 # Func_class: E Amino acid transport and metabolism # Function: Methylaspartate ammonia-lyase # Organism: Escherichia coli O157:H7 # 1 413 1 413 413 816 92.0 0 MKIKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGSPVTPGFTSVRQAGECVSVQLILE NGAVAVGDCAAVQYSGAGGRDPLFLAENFIPFLNDHIKPLLEGRDVDAFLPNARFFDQLR IDGHLLHTAVRYGLSQALLDAAALATGRLKTEVICDEWQLPCVPEAIPLFGQSGDDRYIA VDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSNRILTLRTSERYHPTLHIDVY GTIGLIFDMDPVRCAEYIASLEAEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGS GVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHAMEAYQGGT CNETEISARTCVHVALAARPMRMLVKPGMGFDEGLNIVFNEMNRTIALLQTKD >gi|283548478|gb|GG730299.1| GENE 1956 2120903 - 2122273 1524 456 aa, chain + ## HITS:1 COG:no KEGG:Entcl_1731 NR:ns ## KEGG: Entcl_1731 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 456 1 456 456 897 96.0 0 MARTFKILSPTAILGYGFPEESFRKAMEESPDLIAVDAGSSDPGPHYLGAGKPFTDRAGV KRDLRYMIVAGVKNNIPVVIGTAGGSGAAPHLEWCRQIIHEIAQEEKLSFSMALIPSDVD KEIVHQALDNGKITALDFVPELTHEAIEESTYIVAQMGVEPFQRALKAGAQVVLGGRAYD PACFAALPIMQGFDEGLALHCGKILECAAIAATPGSGSDCAMGIIDDNGFTLKAFNPMRK FTETSAAAHTLYEKSDPYFLPGPGGVLNLKACTFTQVNEGEVYVSGSRHEETPYALKLEG ARQVGFRCLTIAGTRDPIMIAGIDTILEEVQASVKRNLSLNDDSIRMTFHLYGKNGVMGN HEPMKTAGHELGILLDVVAPTQDIANSVCSLVRSTLLHYGYENRIATAGNLAFPFSPSDI QSGPVYEFSIYHLIEASDALRFDFHIEQVTPEGVQA >gi|283548478|gb|GG730299.1| GENE 1957 2122270 - 2122587 310 105 aa, chain + ## HITS:1 COG:no KEGG:Entcl_1730 NR:ns ## KEGG: Entcl_1730 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 105 1 105 105 203 93.0 2e-51 MKHSICSLAQVIRSKNAGPYELVLDILFKTREDYQRVKRSEQLTPQLIAGLYNVKPDFIH NIVWFDPANAVKIVMPRDIISGNIGDNDVYGAQQHAPLLSIEFDL >gi|283548478|gb|GG730299.1| GENE 1958 2122780 - 2124063 1304 427 aa, chain + ## HITS:1 COG:ECs0758 KEGG:ns NR:ns ## COG: ECs0758 COG1301 # Protein_GI_number: 15830012 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli O157:H7 # 1 407 9 415 426 573 83.0 1e-163 MIILGLILGMIAGVAINNMVAAETAKSYAADISIFTTIFLRMVKMIIAPLVISTLVVGIA KMGDAKTLGRIFSKTFFLFICASLLSIALGLVIVNIFQPGAGINFVPHDAGAVAAVKSEP FTLKVFISHAVPTSIVDAMARNEILQIVVFSIFLGCSLAAIGEKAEPIVKVLDSLVHVML KLTGYVMLFAPLTVFAAISGLIAERGLGVMVSAGIFMGEFYLTLGMLWAILIGLSTMIVG PCIARLTKSILEPALLAFTTSSSEAAFPGTLDKLEKFGVSSKIASFVLPIGYSFNLVGSM AYCSFATVFIAQACNIELSMGEQITMLLILMLTSKGMAGVPRASMVVIAATLNQFNIPEA GLILLMGVDPFLDMGRSATNVMSNAMGAAIVGRWEGEHFGQGCRGTAPVKSPEQERPVTE QSEVAMS >gi|283548478|gb|GG730299.1| GENE 1959 2124189 - 2125190 1178 333 aa, chain + ## HITS:1 COG:ECs0538 KEGG:ns NR:ns ## COG: ECs0538 COG2066 # Protein_GI_number: 15829792 # Func_class: E Amino acid transport and metabolism # Function: Glutaminase # Organism: Escherichia coli O157:H7 # 33 330 11 308 310 266 47.0 4e-71 MNKTLLGVSLFSFSVLFSATAFAQTTPDYAKLIEQAHQKYKSNNDGKVADYIPALATYSP KNFAITIATVDGKIYQVGDVNKPFPMESLSKVFTMALAMEQHGPQVVLDKLGANATGMPF NAGLAVELTKGAPENPLVNAGAMSTVSLIEAKDKTDRWNKILDNLNVWADATLTVNEPVF KSEMETNQHNQALAKLMESYNSFYGNTDEAVEIYTRQCSVDITVEQLAKMGAVLANKGKS PFNGKQLLNEKYVPQVLAEMAIAGLYDGSGKWLYSVGIPAKSGVGGGMVAVVPGEYAIAV YSPPLDAAGNSVRAQQTIEYVAEATKANVFLAK >gi|283548478|gb|GG730299.1| GENE 1960 2125282 - 2126934 423 550 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 68 532 31 484 508 167 29 2e-39 MSKPFVWQELFVQSKDSTEYELLSNQHVTVSELDGEEVIKVAPEALTLLAQHAFYEASFF LRAGHLKQIASILHDPQASGNDKYVALQLLRNAEVSAKGVLPNCQDTGTATIVACKGQHV WTGGDDAEALSKGVYTTFTENNLRYSQNAPLDMYTEVNTQTNLPAQIDISATPGNEYRFL FVNKGGGSANKAALFQETKSILQPEKLTAFLIEKMKSLGTAACPPYHIAFVVGGLSADQA LKVAKLASTKYYDNLPTSGNELGQAFRDTALEAELLNASREFGIGAQFGGKYFAHDIRVI RLPRHGGSCPIAMALSCSADRNIKAKINKHGIWLEKLEHNPGKFIPDSQRVENGAQTVQL DLNRPLHEILRDLSALPIGTRLSLSGPIVVARDIAHANIKARLDNGEPMPEYMKKHIVYY AGPAKTPENQACGSMGPTTGGRMDGYVDTFQAQGGSLIMLTKGNRSQQVTDACHKHGGFS LGSIGGAAALLAQQYVKSLHCLEYPELGMEAVWMMEVKNMPAFVLVDDKGNNFFSQFEQQ HRCATCPAGH >gi|283548478|gb|GG730299.1| GENE 1961 2126944 - 2127546 712 200 aa, chain + ## HITS:1 COG:ECs0756 KEGG:ns NR:ns ## COG: ECs0756 COG2109 # Protein_GI_number: 15830010 # Func_class: H Coenzyme transport and metabolism # Function: ATP:corrinoid adenosyltransferase # Organism: Escherichia coli O157:H7 # 1 200 1 200 200 343 85.0 1e-94 MEARANNDRHRQRQQKLKEQVDTRVAAATEKKGILIVFTGNGKGKSTAAFGTATRAVGHG KTVGIAQFIKGQWDNGEYNTLQPLGVEFHIMGTGFTWETQNRQADIEAATVVWQESKRML ADAHYDLVVLDELTYMLAYHYLDTHEVISAIENRPVGQSVIVTGRGCHAQLLELADTVSE IRPVKHAFDSGIQAQMGIDW >gi|283548478|gb|GG730299.1| GENE 1962 2127634 - 2128548 552 304 aa, chain - ## HITS:1 COG:ECs0755 KEGG:ns NR:ns ## COG: ECs0755 COG0583 # Protein_GI_number: 15830009 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 5 301 1 297 301 515 86.0 1e-146 MEEVMRGKIPKTELLVTFEVVARHESYTRAAEELALTQSAVFRQVNALEDFLNTSLFNHA KKRIFLNAAGKYYLNIVKETLNKLERDTTTIMTWQPTVQVIELAVNPTFSTHWLIPNLRE FNKLNPDIIVNIHSLANIGDFLNREYDAAIMREDFYSPWSGVEYLFEEEILPVCSRCLLA EADRKLSVEELLNEFPLLHQSTRIKGWQEWFALSNISSPLVNKGPRFDLLSMLIAAVRSN LGVALLPRFAIQHDLDSGDMVIPCDVPMRTGNRFIMTWREEKAESAHLQIFRDWLLNKSV VSPA >gi|283548478|gb|GG730299.1| GENE 1963 2128942 - 2129730 661 262 aa, chain + ## HITS:1 COG:lin1164_1 KEGG:ns NR:ns ## COG: lin1164_1 COG0007 # Protein_GI_number: 16800233 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Listeria innocua # 5 248 2 245 252 270 54.0 2e-72 MKTFGKVWLVGAGPGDISLLTLKAMMCIKQADVIIYDRLVNPKILEWALPDCLLINVGKN PGFHCVPQDEINALLIRYAQTHNNIVRLKGGDPYVFGRGAEEVEDLVETGIPFEVVPGIS STIGGLTYAGIPVTHRDFASGFHVVTGHTREGNQQQDWRQLAKLNGTLVIVMGIANLAFI CEELLMGGKSADTPAALIMSATRENQRRLTCTLGSLLSKAQEANIAPPALIVIGDVVTLS DRLSFIPEAITLPENLYCESLA >gi|283548478|gb|GG730299.1| GENE 1964 2129709 - 2130449 376 246 aa, chain - ## HITS:1 COG:lin1114_2 KEGG:ns NR:ns ## COG: lin1114_2 COG2207 # Protein_GI_number: 16800183 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Listeria innocua # 101 240 1 141 145 111 40.0 1e-24 MRADERYRVGCQKCDKQCAFEGVKQLKPRILTCHAGLSLFSMPLIDEGHLYGFIVCGQVR PKYQEYKTIVIDNKSSWMDDPKIKAEWGQVAVVDNNTLVASANLLSFIVDNYAKEQQSAQ VSASPTRYIRHYVTEPSRHEKKLLAALRYIDENLYGELSLESVAAHVCLSANYFSRFFKK RLGVNFKTWVSQKKMQKAGELLHDPEHSIDSIARKLQYAQTSYFCRVFRAAHQTSPQSFR HARLSQ >gi|283548478|gb|GG730299.1| GENE 1965 2130825 - 2131694 1197 289 aa, chain - ## HITS:1 COG:STM0739 KEGG:ns NR:ns ## COG: STM0739 COG0074 # Protein_GI_number: 16764109 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 289 1 289 289 507 99.0 1e-143 MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKGGTTHLGLPVFNTVREA VEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI GPNCPGVITPGECKIGIMPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG DPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAYIKDHVTKPVVGYIAGVTAP KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVIK >gi|283548478|gb|GG730299.1| GENE 1966 2131694 - 2132860 1453 388 aa, chain - ## HITS:1 COG:STM0738 KEGG:ns NR:ns ## COG: STM0738 COG0045 # Protein_GI_number: 16764108 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Salmonella typhimurium LT2 # 1 388 1 388 388 710 98.0 0 MNLHEYQAKQLFARYGLPAPVGYACNTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV KVVNSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRR VVFMASTEGGVEIEKVAEETPHLIHKVALDPLAGPMPYQGRELAFKLGLEGKQVQQFTKI FMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQADLREMRDQSQEDP REAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTE AFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKK LADSGLNIIAAKSLTDAAQQVVAAVEGK >gi|283548478|gb|GG730299.1| GENE 1967 2132952 - 2134175 1633 407 aa, chain - ## HITS:1 COG:STM0737 KEGG:ns NR:ns ## COG: STM0737 COG0508 # Protein_GI_number: 16764107 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Salmonella typhimurium LT2 # 1 407 1 402 402 712 94.0 0 MSSVDILVPDLPESVADATVATWHKKPGDAVRRDEVLVEIETDKVVLEVPASADGILDAV LEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKDSTPAQRQQASLAEQNNDALSPAIRR LLGEHNLEASDIKGTGVGGRITREDVEKHLAKAPAAKDEAKAPAAAPAPQPQLGARGEKR VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGDAFEKRHGIRLGFMSFY VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDLLGMADIEKN IKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAV DGKVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV >gi|283548478|gb|GG730299.1| GENE 1968 2134190 - 2136991 2990 933 aa, chain - ## HITS:1 COG:STM0736 KEGG:ns NR:ns ## COG: STM0736 COG0567 # Protein_GI_number: 16764106 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Salmonella typhimurium LT2 # 1 933 1 933 933 1879 95.0 0 MQNSALKAWLDSSYLSGSNQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQLHS KTRDYFRRQALITPRYSSTISDPDANVKQVKVLQLINAYRFRGHQHANLDPLGLWQQEKV ADLDPSFHDLTDADFQESFNVGSFAGGKDTMKLSDLVVALKQTYCGPIGAEYMHITSTEE KRWLQQRIESGRAAFSSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLK EMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMG FSSDIETEGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAV TGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIF HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKH PTPRKIYADKLEADNVATLEDATEMVNLYRDALDAGECVVKEWRPMNMHSFTWSPYLNHE WDENYPNKVEMKRLQELAKRISTVPDAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLA YATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQANGSTYTPLQHVHNGQGTFRVWDSVLS EEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH GYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKS LLRHPLAVSSLDELANGTFLPAIGEVDELDPKGVKRVVMCSGKVYYDLLEQRRKNDQKDV AIVRIEQLYPFPHKAVQEALKPFAHVHDFVWCQEEPLNQGAWYCSQHHFREVIPFGSALR YAGRPASASPAVGYMSVHQKQQQDLVNDALNVD >gi|283548478|gb|GG730299.1| GENE 1969 2137365 - 2138081 682 238 aa, chain - ## HITS:1 COG:ECs0749 KEGG:ns NR:ns ## COG: ECs0749 COG0479 # Protein_GI_number: 15830003 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Escherichia coli O157:H7 # 1 238 1 238 238 483 95.0 1e-136 MKLEFSVYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALMQLKEKDPSLSFRRSCREGVC GSDGLNMNGKNGLACITPVSALNQPGKKIVIRPLPGLPVVRDLVVDMGQFYAQYEKITPY LLNNGKNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYR FLIDSRDTETDSRLEGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLKRSA >gi|283548478|gb|GG730299.1| GENE 1970 2138097 - 2139863 2209 588 aa, chain - ## HITS:1 COG:ECs0748 KEGG:ns NR:ns ## COG: ECs0748 COG1053 # Protein_GI_number: 15830002 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Escherichia coli O157:H7 # 1 588 1 588 588 1118 96.0 0 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNT HEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELDHMGLPFSRLDNGTIYQRPFG GQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNADGAIVGC TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ FHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREG RGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGI PTKVTGQALTVNEQGEDVVIPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAVGLHLQ ESIAEQGDLLDATEEEIDASLARLNRWNGNRNGEDPVAIRKALQECMQHNFSVFREGDAM AKGLEELKAIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAH SRFDFPERDDENWLCHSLYLPESETMTRRQVNMEPKLRPAFPPKIRTY >gi|283548478|gb|GG730299.1| GENE 1971 2139863 - 2140210 510 115 aa, chain - ## HITS:1 COG:STM0733 KEGG:ns NR:ns ## COG: STM0733 COG2142 # Protein_GI_number: 16764103 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase, hydrophobic anchor subunit # Organism: Salmonella typhimurium LT2 # 1 115 1 115 115 148 98.0 2e-36 MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTFEVWTGFFSSAFTKVF TLLALFSILIHAWIGMWQVLTDYVKPLAVRLILQLAIVVALVVYVIYGFVVVWGV >gi|283548478|gb|GG730299.1| GENE 1972 2140204 - 2140608 276 134 aa, chain - ## HITS:1 COG:ECs0746 KEGG:ns NR:ns ## COG: ECs0746 COG2009 # Protein_GI_number: 15830000 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Escherichia coli O157:H7 # 6 134 1 129 129 194 86.0 5e-50 MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSP EGFLAASSIMNNFFVELIMWGILIALAYHAVMGIRHLLMDFGYIEETLEAGTRSAKICFV IIVVLSLLAGVLVW >gi|283548478|gb|GG730299.1| GENE 1973 2141306 - 2142589 1502 427 aa, chain + ## HITS:1 COG:STM0730 KEGG:ns NR:ns ## COG: STM0730 COG0372 # Protein_GI_number: 16764100 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Salmonella typhimurium LT2 # 1 427 1 427 427 878 96.0 0 MADTKAKITLNGDAAIELDVLKGTLGQDVIDIRSLGSKGMFTFDPGFTSTASCESKITFI DGDEGILLHRGFPIDQLATESNYLEVCYILLYGEKPTQEEYDEFKTTVTRHTMIHEQITR LFHGFRRDSHPMAVMCGVTGALAAFYHDSLDVNNARHREIAAFRLLSKMPTMAAMCYKYS IGQPFVYPRNDLSYAGNFLNMMFSTPCEKYEVNPILERAMDRILILHADHEQNASTSTVR TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFR LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELEHIALNDPYFIEKKLYP NVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWNEMHTDGMKIARPRQLYTGYDKRD FKSDIKR >gi|283548478|gb|GG730299.1| GENE 1974 2142922 - 2143263 158 113 aa, chain + ## HITS:1 COG:no KEGG:CKO_02442 NR:ns ## KEGG: CKO_02442 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 111 45 155 156 180 84.0 2e-44 MKTNYIILGNVYHIENVMSIYDELSTIDFTKTASEEALRLDEDLFQLTQNNGVIIDIGWY PSLDEKGEFLIQVISGGDWDHPMIKTSSGWDKNELSEKLSRVLGQLPFILKVE >gi|283548478|gb|GG730299.1| GENE 1975 2143677 - 2144081 104 134 aa, chain + ## HITS:1 COG:NMB1980 KEGG:ns NR:ns ## COG: NMB1980 COG4316 # Protein_GI_number: 15677809 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis MC58 # 13 118 17 117 139 99 52.0 1e-21 MTITVTVQAQLIVGEAQVIESLAPEGSYTAVFEDDGQTGYFYALDESIDGNPIKDVLHIY NAEDVSDGHIPSDVKIGWSEDSKKCVLLINGYPHGVFDFESKNGYCRSGFPPTISKEWSI FGHAWNDAVDDFFR >gi|283548478|gb|GG730299.1| GENE 1976 2144213 - 2145262 707 349 aa, chain + ## HITS:1 COG:abrB KEGG:ns NR:ns ## COG: abrB COG3180 # Protein_GI_number: 16128690 # Func_class: R General function prediction only # Function: Putative ammonia monooxygenase # Organism: Escherichia coli K12 # 1 348 16 363 363 437 79.0 1e-122 MPVLQWSLLFLLSLLLSLFFLLIHLPGALLLGSMIAGIIFSMRGISLRPPRCTFLGAQAI LGCMIAQNLTGSILTTLAVHWPMVVAILLATLISSAVIGWLLVRYSNLPGNTGAWGSSPG GAAAMVAMAQDYGADIRLVAFMQYLRVLLVVGAAALVTRLVMGDQAQTVNQQIVWFPPLS INLLSTILLAAVAGTAGRLLRIPSGVMLLPMLAGALLNASGMMVIELPEWLLAIAYMAIG WQIGLGFDKQIFLMALRPLPQILLSIFSLMAICAAMAWGLAHYMQIDFLTAYLATSPGGV DSVAVIAAGSHADMALIMAMQTLRLFSILLTGPAVARFISAHAPKNSSS >gi|283548478|gb|GG730299.1| GENE 1977 2145270 - 2146058 511 262 aa, chain - ## HITS:1 COG:no KEGG:CKO_02446 NR:ns ## KEGG: CKO_02446 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 262 1 263 263 443 84.0 1e-123 MKSNNINAAILMATLVMPATGVMAAENNATPVSQVKSTPFTTVYFAPRTQYRTASKGFLQ RLMLTGVVQDSDSIFKSMYWSFETDADLGKNMDQWKSSYQEAEFNKPFVLGDSDFWLEPG VVFHWESAGSRIDPYIGIGYHFDPTLGAVLRYRYNHQNHDSETLQGDWDDSSEHRIDIYL TKYFTPNFWVQYNPTYYSKTHGDKFEYANGKNHTLQHNFVFNFHTTPRFYPFFELGYLDK YQDGDDTKNEYQIRVGFKYNLN >gi|283548478|gb|GG730299.1| GENE 1978 2146139 - 2147329 733 396 aa, chain - ## HITS:1 COG:no KEGG:CKO_02447 NR:ns ## KEGG: CKO_02447 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 396 1 396 396 758 90.0 0 MSVTIRKEPIVPVVLRSGERAAIAQKIRRALPVILSAIDRNRDYFGLRYPDAACENGRYP IIDNQEWTTSFWTGQLWLAWEWTRNDAYRTLAEQHVRSFGERIARRDHTNHHDLGFLYSL SCIAANKLTGNREAIYIAQQAAEVLMERYHEKCGIIQAWGELDNPEQQGRMIIDCNMNLP LLYQASASTGDPRYAEAAKNHIEQARRYIAREDGSTFHTYYMDVHTGEPRFGNTHQGFSD DSCWSRGQAWGVYGFLLNYLYTGDERLLELSQTLANYFINRLPEDLVCYWDLALTDPNSE RDSSASAILACALLELVKQLPVTHPDRESYEALALRMIARMLDGYLNTAHKAGEGLLKHS VYYFKGNVGVDECCSWGDYFLMEAMTRATSCWNSYW >gi|283548478|gb|GG730299.1| GENE 1979 2147351 - 2148616 1444 421 aa, chain - ## HITS:1 COG:ECs3241 KEGG:ns NR:ns ## COG: ECs3241 COG0477 # Protein_GI_number: 15832495 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 9 392 8 391 415 223 32.0 5e-58 MTNPVQSTRSAYIKLSLFVFLFTFTWAASFGLYAIWLGDKAGLDGVEIGTVFAVNGVFAV VIKPVYGYIMDKMGMKKHLLYFVCLVSALMAPFFIWCYLPLLQTHFISGMIVGALFFSLG WYAGVAAEESYVDRFSRLYAMEFGRIRMWAALGWATASSFSGYLYNISPKINFVISSVSA LCMFAVLLTLKVDHFGQEENDVLSKEKIVIGDVFELLRNKKFWTFALYIAGVAWMMFIAE QQFSRYFVTFFSTKEEGNAMFGYMSTAQSAAEFFGMMLVPAIINRIGAKQGMILTGLVIS LRLIISGLTNDPLIICLVKPLYGIEIALILVSVFKYIAEHFDKRVNATMYLLGYQAMIYV GSIVVAPPAGYAYQKIGFEHTYLIMGVIALVFTGISAITLSTCYHHKKTITAPVHGQEAT H >gi|283548478|gb|GG730299.1| GENE 1980 2148641 - 2150422 1025 593 aa, chain - ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 21 568 36 580 617 371 37.0 1e-102 MRARQEYAEKARQWLASAIPHLSRDNTRLDVGETSAQYPMDIAGMEGFARLLWILSPLLS GGEASEYRETFIRGIRHGCDPDHPGYWGNLVDNDQRCVEMAAFGVALALPNTGLWDALTT DEQDNLERWLRQSADIQIPGNNWHFFPVLVQVGLKCVGRHYDMMVINKHLNAIEPFWLGN GWYSDGAGKPRDYYISSGFHFYSLLYSHLMQDADPERCLRYRQRARQFAKDYIYYFTSDG DAIPFGRSLTYRFVQVAFWSAVIWTGLDVFTIPIIKGVILRHLDWWFAQPFIGPDGLFTL GYTYPNLVMTEDYNSPCSPWWACKALLILALPEQSAFWQAESAPLPEPEPIHPIKEAGQF IIHDDDNRHAWMLMSGQYDRNNFVNFDAKYGKFAYSSQFGFTLERGHYGLNHAACDSMLM LCEQDNYWRGRRECDVVEMTDALIRSRWLPWHDVVVTTWLIPLQQGHIRIHRVETARTLD SAEGGFALNCHQLIATQTVQHGVTLRASCGVCQITDLLAERQPEVVTTPPNSNILYASPG AIPCLRSTLMPGTHWLACAINATSLSSLPPPVAMAFDRESQVLTLGVKTLEII >gi|283548478|gb|GG730299.1| GENE 1981 2150613 - 2151461 742 282 aa, chain + ## HITS:1 COG:BH1906 KEGG:ns NR:ns ## COG: BH1906 COG2207 # Protein_GI_number: 15614469 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Bacillus halodurans # 34 277 36 287 299 72 22.0 6e-13 MQQTEDSRYLEHINLNDRSIYFNRMKDMPANYYHWHQCVEILSVSQGVGIALMEHQQYTV KPGRIFIFPPGKLHKVFVEQDDRNIYHRTTLHFNGPQIEQYLRDFPRQQMLLRQLCSRGE KARVFDVGDVQAVIETLLSRFEEQIKGQTFSISDSAFLVMQLISLLPHQAQATGQNTFSV SIIRWIETHFHQCCSLEDIASEMGCSRGHASRRFHEETGGTIQEYLMMRRIRQACELLLH TNGSVRDIATQVGFSEYAWFITCFRKNMGKTPLQYRKTYASV >gi|283548478|gb|GG730299.1| GENE 1982 2151464 - 2152255 766 263 aa, chain - ## HITS:1 COG:STM0728 KEGG:ns NR:ns ## COG: STM0728 COG0266 # Protein_GI_number: 16764098 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Salmonella typhimurium LT2 # 1 262 1 262 263 486 87.0 1e-137 MPEGPEIRRAADNLEAAVKGKPLMDVWFAFEQLKPYQSQLIGQRVTRLETRGKALLTHFS NGLTLYSHNQLYGVWRVVETGNVPQTSRVLRVRLQTRDKTILLYSASDIDMLTPEQLTTH PFLQRVGPDVLDLRLTPDDVKARLLSPRFRNRQFSGLLLDQAFLAGLGNYLRVEILWQVG LTGQHKASQLSDEQLDALAHALLDIPRLSYNTRGLVDENKHHGALFRFKVFHRDGEACER CGGIIEKTTLSSRPFYWCPGCQT >gi|283548478|gb|GG730299.1| GENE 1983 2152270 - 2152914 520 214 aa, chain - ## HITS:1 COG:YPO2703 KEGG:ns NR:ns ## COG: YPO2703 COG2039 # Protein_GI_number: 16122907 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Yersinia pestis # 1 214 1 215 215 300 68.0 1e-81 MKTVLITGFEPFGGESVNPSWEVVSSLDNAIIGGCRVVARQLPCVFGESLAVLNGAIDAL SPSLVLAVGQAGGRTDITVERVAINVDDARIADNQGQQPIDVPIVADGPAAWFSTLPIKA MVVAMRNAGIPASVSQTAGTFVCNHVMYGLLHKLRDVPTVKGGFIHIPYLPQQAAQHPGA PSMASETVRRALEVAIATALQLESDIAVTGGATH >gi|283548478|gb|GG730299.1| GENE 1984 2152924 - 2153919 1218 331 aa, chain - ## HITS:1 COG:YPO2702 KEGG:ns NR:ns ## COG: YPO2702 COG3817 # Protein_GI_number: 16122906 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 1 331 1 339 339 485 79.0 1e-137 MNFQQSYLYWLAGAVLLIVALMSWQDKANPRRFTTGLFWGIYGVLFLLGDWTYSLFGDKR AVHIAVGVAVVVLALIAGFGGVKLGSYHQRTQQQREESASRLGNRLFFPALAIPVVTVIG VLMFNHIPGLQDALFGPGNHATLVTLFSMTAGSLIGLAMAIKMTHERVHQPIQEARRLLD SIGWAFILPQILATLGLLFTAAGVGSGISWLTQEYLAVDSRFIAVAVYTIGMALLTMVMG NAFAAFPIVTAGIGIPILVLQHGGNPAVMAAIGMFSGYCGTLMTPMAANFNIVPAALLEL PDKNAVIKAQVPTGILLLLVNVFLMYFLMFL >gi|283548478|gb|GG730299.1| GENE 1985 2153916 - 2154638 904 240 aa, chain - ## HITS:1 COG:YPO2701 KEGG:ns NR:ns ## COG: YPO2701 COG3819 # Protein_GI_number: 16122905 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Yersinia pestis # 1 240 1 243 243 346 81.0 2e-95 MGEAISLWPLTGIAVIVVGFLLRFNPVLVVIIAGIVTGLAAHMPIATILEKLGEGFLNTR NLPFILLIPLAVIGLLERHGLKERAQAWIAKIRSATSGRLLIVYLFIREATAALGLTSLG GHPQMVRPLLAPMAEGAAEKNHGEIPGAVRYRLRAMSAATDNVGLFFGEDIFVAFGAIIF MHNFMLESGGIQTEPLHIALWGIPTAICAFLIHGTRLWRLDSYLQREVAKANAAAKGEVK >gi|283548478|gb|GG730299.1| GENE 1986 2154693 - 2155427 654 244 aa, chain - ## HITS:1 COG:STM0714 KEGG:ns NR:ns ## COG: STM0714 COG1540 # Protein_GI_number: 16764084 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Salmonella typhimurium LT2 # 1 244 1 244 244 391 83.0 1e-109 MKIDLNADLGEGCANDAALLQLVSSANIACGFHAGDAQTMLSSVREALKNGVAVGAHPSF PDRENFGRSAMTLPAQTVYAQTLYQIGALAAITRAEGGVMRHVKPHGMLYNQAAKDPQLA DAIAKAVHACDPSLILVGLAGSELIRAGEHYGLVTRQEVFADRGYQADGSLVPRSQPGAL IENEEQALTQTLEMVQSGRVKSHSGTWASVTAQTVCIHGDGEHALAFARRLRSAFNACNI QISA >gi|283548478|gb|GG730299.1| GENE 1987 2155417 - 2156349 952 310 aa, chain - ## HITS:1 COG:STM0713 KEGG:ns NR:ns ## COG: STM0713 COG1984 # Protein_GI_number: 16764083 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Salmonella typhimurium LT2 # 1 310 1 310 310 547 86.0 1e-155 MLNIIRAGMYTSVQDGGRHSFRQSGISHCGALDKPALNVANLLVGNDANAAALEITLGQL VVEFEADGWFALTGAGCEAHLDRTPVWSGWRLPVKAGQRLTLKRPHHGMRSYLAVAGGFD VPEVMGSRSTDLKVGIGGLEGRLLRDGDRLAIGASTRQFSGPQGVKQLMWGNHIRALPGP EYQEFDEVSQASFWRSPWQLSPQSNRMGYRLQGQPLTRTTDRELLSHGLLPGVVQVPHNG QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARHDRQRYLE QLTWRLNNEN >gi|283548478|gb|GG730299.1| GENE 1988 2156343 - 2156999 640 218 aa, chain - ## HITS:1 COG:ECs0736 KEGG:ns NR:ns ## COG: ECs0736 COG2049 # Protein_GI_number: 15829990 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Escherichia coli O157:H7 # 1 218 1 218 218 374 86.0 1e-103 MQRARCYLLGETAVVLELEPPITLATQKRIWRLAQRLVDAPNVLEAIPGMNNITVTLRDP QTLALDAIERLQRWWEESEALEPDSRFIEIPVTYGGAFGPDLAEVARHSGLSDKQVVELH ASVDYVVWFIGFQPGFPYLGSLPEPLHTPRRSEPRLLVPAGSVGIGGSQTGIYPLATPGG WQLIGRTSVALFDPKREEPILLRAGDTVRFVPQKEGVC >gi|283548478|gb|GG730299.1| GENE 1989 2157016 - 2157759 888 247 aa, chain - ## HITS:1 COG:STM0711 KEGG:ns NR:ns ## COG: STM0711 COG0327 # Protein_GI_number: 16764081 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 247 1 247 247 486 97.0 1e-137 MKNTELEQLINDKLNSAAISDYAPNGLQVEGKETVHKIVAGVTASQALLDEAVRLQADAV IVHHGYFWKGESPVIRGMKRHRLKTLLENDINLYGWHLPLDAHPELGNNAQLATLLGITV LGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDTGPENVQRVAWCTGGGQSFID SAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTF IDIPNPA >gi|283548478|gb|GG730299.1| GENE 1990 2158049 - 2159530 1694 493 aa, chain + ## HITS:1 COG:STM0710 KEGG:ns NR:ns ## COG: STM0710 COG3104 # Protein_GI_number: 16764080 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Salmonella typhimurium LT2 # 1 493 1 493 493 854 92.0 0 MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYV TPILGGYLADKVLGNRMAVMIGAFLMAVGHLVLGASEMAPAFLYLSLAIIVCGYGLFKSN VSCLLGELYQPEDPRRDGGFSLLYAAGNIGSIIAPIACGYVQEEYSWAMGFALAAIGMLA GLVIFLCGNRHFAHTTGVNKAVLCTKKYLLPNWAWLLVLLVAAPLLITVLFWKEWSVYAL IVATVIGLAVLAKIYRQAQTQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVN REILGYSVPTAMFQSVNAFAVMLCGIVLAWVVKESVGGNRAVRIWGKFALGLGLMSAGFC ILTVSARWSAAYGHSSMPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML LSGAIANYLAGAIADQTSQGSFDAAGAINYSINAYIDVFSEITWGALACVVLVLLIWLYQ SLKFRNRPLAVES >gi|283548478|gb|GG730299.1| GENE 1991 2159581 - 2160495 448 304 aa, chain - ## HITS:1 COG:STM3508 KEGG:ns NR:ns ## COG: STM3508 COG5464 # Protein_GI_number: 16766796 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 303 1 303 304 437 69.0 1e-122 MTMPTTSTPHDAVFKTFLHHPETARDFLDIHLPAELRMLCDLNSLKLESESFIEADLRSR YSDVLWSVRTRDGDGYVYVVIEHQSSAEPHMAFRLLRYAMAAMQRHLDAGHKELPLVIPM LFYHGCRSPYPYSLCWLDAFADPVAARQLYSSAFPLVDITVVPDNEIMAHRRMALLELMQ KHIRQRDLMGLVEQLATLLLTGCANDTQLQAMFNYILQSGDESRFNEFMQEIAQRIPQHK ERLMTIAERLRLDGLQEGLQQGLRQGKREAALRIAQTMLEQGIDRAMVLLVTGLTEEELA ASHA >gi|283548478|gb|GG730299.1| GENE 1992 2160657 - 2162075 1248 472 aa, chain - ## HITS:1 COG:STM0709 KEGG:ns NR:ns ## COG: STM0709 COG0415 # Protein_GI_number: 16764079 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Salmonella typhimurium LT2 # 1 471 1 471 473 808 83.0 0 MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS LPQVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASGA LDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRLS ASLATGGLSPRQCLNRLLAEQPQALEGGAGSVWLNELIWREFYRHLMTYHPALCRHQPFI RWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKDLLID WRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIRQW LPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE >gi|283548478|gb|GG730299.1| GENE 1993 2162097 - 2163050 746 317 aa, chain - ## HITS:1 COG:STM1389_1 KEGG:ns NR:ns ## COG: STM1389_1 COG1683 # Protein_GI_number: 16764739 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 160 1 161 161 206 56.0 7e-53 MSEKIPVGISACLLGETVRYDGGHKRLAFAVEELSPWVTFEPVCPEMGIGLPVPRPALHL VKEDDTVSLRFSDKREGDLTEAMTTFSQRQSARMEHLCGYIVCAKSPSCGMERVRVYDAE GKNNRKAGRGIFTSVLMSTLPWLPVEEDGRLHDPQIRENFVERIYALHELNGIRQQGLTR GALIDYHSRYKLLLLAHSQAEYRDLGRFVAAISEWQDLQAFFVEYRLRLMNLLAHLPSRR NHTNVLMHVQGYFRTQLNSRQRQELASLIDGYRRATQPLLAPITLLKHYMAEYPDAYLSG QRYFNPWPEALRLRYGR >gi|283548478|gb|GG730299.1| GENE 1994 2163139 - 2163345 307 68 aa, chain - ## HITS:1 COG:no KEGG:CKO_02461 NR:ns ## KEGG: CKO_02461 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 68 34 101 101 125 91.0 4e-28 MDFYKEYPAHIVFLRRTFAVVAGVLALPVMLFWKDRARFYSYLHRVWSKTSDKPVWMEQA EKATCDFY >gi|283548478|gb|GG730299.1| GENE 1995 2163540 - 2163743 77 67 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_0725 NR:ns ## KEGG: EcE24377A_0725 # Name: kdpF # Def: K+-transporting ATPase, F subunit (EC:3.6.3.12) # Organism: E.coli_E24377A # Pathway: Two-component system [PATH:ecw02020] # 1 67 1 67 67 80 86.0 2e-14 MVFAIFILFLHPARRFLRNLCKQKSTLWLSHLCHWRCTVSAGVITGVVLVVLLLGYLVYA LINAEAF >gi|283548478|gb|GG730299.1| GENE 1996 2163743 - 2165422 1967 559 aa, chain + ## HITS:1 COG:kdpA KEGG:ns NR:ns ## COG: kdpA COG2060 # Protein_GI_number: 16128674 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, A chain # Organism: Escherichia coli K12 # 1 557 1 557 557 883 88.0 0 MAAQGFLLIASFLLVLFVIARPLGFGLARLINNTSLPGLAGAERLLWRGLGISQQEMNWR QYLLAILTLNALGLLVLFLMLMTQNLLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYAG ETTLSYFSQMAGLTVQNFLSAATGIAVIFALARAFTRQSMSTLGNAWIDLVRITLWILVP IALLIALFFIQQGALQNILPYQPITTLEGVKQLLPMGPVASQEAIKMLGTNGGGFFNANS AHPFENPTALTNLVQMLAIFLIPTALCFAFGDVVGDRRQGRTLLWAMSLIFVICVAVVMW AEVQGNPHLMQLGADSNINMEGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGM VPMWLMQIGEVVFGGVGSGLYGMLLFVLLAVFIAGLMIGRTPEYLGKKIDVREMKMTALA ILVTPALVLLGTAIAMMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANTPF WNCLLALCMFFGRFGVIIPVMAIAGSLVSKKSQPASPGTLPTHGALFVGLLIGTVLLVGA LTFIPALALGPVAEYLSLH >gi|283548478|gb|GG730299.1| GENE 1997 2165443 - 2167491 2630 682 aa, chain + ## HITS:1 COG:ECs0725 KEGG:ns NR:ns ## COG: ECs0725 COG2216 # Protein_GI_number: 15829979 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity K+ transport system, ATPase chain B # Organism: Escherichia coli O157:H7 # 1 681 1 681 682 1178 93.0 0 MSRKQLALFEPSLVAQALMDAVKKLSPHTQWRNPVMFIVWLGSLLTTLLTLAMATGYMPG NPWFTGAISLWLWITVLFANFAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAMDH VPADELRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGT RILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLLATATLW PFSAWGGSAVSITVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGD VDVLLLDKTGTITLGNRQASDFLPAQGVDEKTLADAAQLSSLADETPEGRSIVVLAKQRF NLRIRDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVEQKV ENVARLGATPLVVAEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAA IAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQ AAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYP QLNALNVMGLHSPDSAILSAVIFNALVIVFLIPLALKGVSYKPLSASAMLRRNLWIYGLG GLVVPFIGIKAIDLLLTLLGLA >gi|283548478|gb|GG730299.1| GENE 1998 2167542 - 2168066 555 174 aa, chain + ## HITS:1 COG:STM0704 KEGG:ns NR:ns ## COG: STM0704 COG2156 # Protein_GI_number: 16764074 # Func_class: P Inorganic ion transport and metabolism # Function: K+-transporting ATPase, c chain # Organism: Salmonella typhimurium LT2 # 1 174 15 188 194 251 77.0 3e-67 MLITGGAYPLLTTALGQWWFPHQANGSLIREDRVVRGSELIGQNFTAAGYFQGRPSATAE MPYNPMASGGSNLAVSNPELDKQLQSRIAALRAANPQANPAVPLELVTASASGLDNNLTP AAVAWQIPRVAQARNLSVEEVTRLVAQYTQKPLVSFIGQPVVNLVELNLALDRL >gi|283548478|gb|GG730299.1| GENE 1999 2168066 - 2170750 2524 894 aa, chain + ## HITS:1 COG:kdpD KEGG:ns NR:ns ## COG: kdpD COG2205 # Protein_GI_number: 16128671 # Func_class: T Signal transduction mechanisms # Function: Osmosensitive K+ channel histidine kinase # Organism: Escherichia coli K12 # 1 894 1 894 894 1618 90.0 0 MTDEPLRPDPDRLLEQTTASHRGKLKIFFGACAGVGKTWAMLTEAQRLRAQGLDVLVGVV ETHGRKETAALLDGLSLLPLKRHARHGRHISEFDLDAALARRPALILMDELAHSNAPGSR HPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGIQVRETVPDPFFDAADDVVLV DLPPDDLRQRLNEGKVYIAGQAERAIEHFFRKGNLIALRELALRRTADRVDDQMRAWRGR PGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLAARLGSVWHAVYVETPALHRLPEKQRR AILSALRLAQELGAETATLSDPAEDKAVIRYAREHNLGKIVLGRPTTRRWWRSDSFADKL AHRAPDLDLMIVALDEPPSRPTLQTTDNRTFKDKWRVQIQGCVVAVALCAIITLIAMQWL MAFDAANLVMLYLLGVVVIALFYGRWPSVLATFINVASFDLFFIAPRGTLAVSDVQYLLT FTVMLTVGLVIGNLTAGVRYQARVARYREQRTRHLYEMSKALAVGRSQQDIAATSEQFIA STFQARSQVLLPDEHGKLAPLTHQQGMTPWDDAIAQWSFDKGQPAGAGTDTLPGVPYQIL PLKSANKTHGLLVVEPGNLRQLMIPEQQRLLETFTLLVASALERLTLTASEEQARFASER ESIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNN LLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSAPINLSLPEPLTLIHVDGPLFER VLINLLENAVKYAGPQAQIGIDASVDGEHLQLDVWDNGPGIPSGMEQRVFDKFSRGNKES SVPGVGLGLAICQAIVDVHGGTISAHNRAQGGACFRVTLPQEVPPELEDFHEDM >gi|283548478|gb|GG730299.1| GENE 2000 2170747 - 2171424 625 225 aa, chain + ## HITS:1 COG:STM0702 KEGG:ns NR:ns ## COG: STM0702 COG0745 # Protein_GI_number: 16764072 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 407 92.0 1e-113 MTNVLIVEDEQAIRRFLRTALEADGLRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDG IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHA SGASPEPVVHFSNVKVDIAARLVHRGDEEIHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV WGPNAVEHSHYLRIYMGHLRQKLELDPARPRHFLTETGIGYRFMP >gi|283548478|gb|GG730299.1| GENE 2001 2171522 - 2173162 1922 546 aa, chain - ## HITS:1 COG:STM0698 KEGG:ns NR:ns ## COG: STM0698 COG0033 # Protein_GI_number: 16764068 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglucomutase # Organism: Salmonella typhimurium LT2 # 1 546 1 546 546 1068 97.0 0 MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPTAGNAEHAVKFGTSGHRGSAGRHSFNEPH ILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPT PAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANAL LANGLQGVKRMSLDAALASGHVKEQDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSG IEYWKRIAQHYNLNLTIVNDHVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLA FANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPQWGKDVAVGKTLVSSAMIDRVVN DLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAE ITAVTGKNPQEHYNELAARFGAPSYNRLQAGATSAQKAALSKLSPEMVSASTLAGDPITA RLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVS EVLKNA >gi|283548478|gb|GG730299.1| GENE 2002 2173187 - 2173729 484 180 aa, chain - ## HITS:1 COG:STM0697 KEGG:ns NR:ns ## COG: STM0697 COG3057 # Protein_GI_number: 16764067 # Func_class: L Replication, recombination and repair # Function: Negative regulator of replication initiationR # Organism: Salmonella typhimurium LT2 # 1 180 1 180 180 320 90.0 6e-88 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPVTPVVKDVRAVQAVVEAKP VNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLVLSTLYSLDQNAFAEATESLHGRTRVYF AADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMVEHIMQSMQFPAELIEKVCGTI >gi|283548478|gb|GG730299.1| GENE 2003 2173863 - 2174696 760 277 aa, chain + ## HITS:1 COG:ybfF KEGG:ns NR:ns ## COG: ybfF COG0596 # Protein_GI_number: 16128662 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 21 274 1 254 254 452 87.0 1e-127 MWQNGQHDTLTRECEKKNFAMKLNIRAQSAQNPHNNSPIVLVHGLFGSLDNLGILARSLV ADHDIIQVDMRNHGLSPRSPEMNYPAMAQDLVDTLNDRQIEKAIFIGHSMGGKAVMALTA LAPDRIDRLVAIDIAPVDYHVRRHDEIFAAINAVTDAQATSRQQAASVMRQHLQEEGVIQ FLLKSFVDGEWRFNVPVLWDQYPHIVGWETVPAWEHPALFIPGGNSPYVSEAYREQLLAQ FPQARAHVIAGAGHWVHAEKPEAVLRAIRRYLNEQAN >gi|283548478|gb|GG730299.1| GENE 2004 2174825 - 2175112 346 95 aa, chain + ## HITS:1 COG:no KEGG:KP1_1661 NR:ns ## KEGG: KP1_1661 # Name: not_defined # Def: LexA regulated protein # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 95 24 118 120 126 93.0 2e-28 MAKEQTDRTTLDLFAQERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAD AVDALNELAEARNMSRSELIEEMLMNQLSALRGQA >gi|283548478|gb|GG730299.1| GENE 2005 2175268 - 2175798 776 176 aa, chain + ## HITS:1 COG:ECs0715 KEGG:ns NR:ns ## COG: ECs0715 COG0716 # Protein_GI_number: 15829969 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 344 98.0 5e-95 MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEGYDILLLGIPTWYYG EAQCDWDDFFPTLEDIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHW PTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEIINA >gi|283548478|gb|GG730299.1| GENE 2006 2176088 - 2176534 421 148 aa, chain + ## HITS:1 COG:ECs0714 KEGG:ns NR:ns ## COG: ECs0714 COG0735 # Protein_GI_number: 15829968 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Escherichia coli O157:H7 # 1 148 1 148 148 277 98.0 4e-75 MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN QFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVVEFSDDSIEARQREIAAKHGI RLTNHSLYLYGHCAEGDCREDEHAHDGK >gi|283548478|gb|GG730299.1| GENE 2007 2176654 - 2177580 675 308 aa, chain + ## HITS:1 COG:STM0692 KEGG:ns NR:ns ## COG: STM0692 COG0583 # Protein_GI_number: 16764062 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 306 1 306 308 502 86.0 1e-142 MELRQLRYFVRIVETGSMGSAALDLNIGVSALSQQMTRLENELAIRLLQRTSRGVTPTSA GMAFYSQAQLALRHADDAILAARKSRLSGHVSVGMAPSTASVLGMPFINAMRESYSDVRL HVVESLSGNLERMINTRQIDLAIVFQKEKILRWSARPILEERLFLIGTHALLADIADDNI APAQLASIPLIMPSPGHGLRGRLEAICQEHALNIEIATEIDGLALLMSAVRSGIGATLQP GAAISHLDKDTLRVIGVHNPILSRPNFLVSLSDDELTPAGLAARVVLTKVMHQLVETGSW PGAILYNN >gi|283548478|gb|GG730299.1| GENE 2008 2177678 - 2179081 1293 467 aa, chain + ## HITS:1 COG:STM0691 KEGG:ns NR:ns ## COG: STM0691 COG1053 # Protein_GI_number: 16764061 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Salmonella typhimurium LT2 # 1 467 1 467 467 900 93.0 0 MVDVLVIGGGNAALCAALSAREQGASVLLLEAAPREWRGGNSQHTRNLRCMHDAPQDVLV ESYPEEEFWQDLRRVTEGNTNEALARLVIRTSSQCRDWMRQHGVNFQPPLSGALHVARTN AFFMGGGKALVNAYYRSAEKLGVQIRYDTPVQALELRNGEFVAALAGEERITAKSCVLAA GGFESNREWLREAWGENERGEWPADNFLIRGTRFNQGVLLKFMMDAGADIIGDPSQSHCV AIDARAPLYDGGICTRVDCVSLGIVVNRDAERFYDEGEDFWPKRYAIWGRLVAQQPGQIG YSIIDSKAIGHFMPPVFPGAQANTLAELAHQLGLDAERFTHTVTQYNNACQAGQFDHTVL DNCATKDLLPAKTHWARPLDQPPYYGYALRPGITFTYLGLKVNERAAVHFAGLPSRNLFV AGEMMAGNVLGKGYTAGVGMSIGTTFGCIAGKEAALAAGKEARHEAA >gi|283548478|gb|GG730299.1| GENE 2009 2179068 - 2180207 1037 379 aa, chain + ## HITS:1 COG:no KEGG:Kvar_3668 NR:ns ## KEGG: Kvar_3668 # Name: not_defined # Def: CitB domain protein # Organism: K.variicola # Pathway: not_defined # 1 379 1 379 379 680 91.0 0 MKQLEKLIIEAQIITEPEAEVERVMQVCNACRYCEGFCAVFPAMTQRLEFGKADINYLAN LCHNCGACLHACQYAPPHEFAINVPKAMAEVRLETYQHYAQPAAFGTLYRRAGVTVTLAL VFGLILFLLLAIGLTGSLFHPPLAGDFYQIFPHNLLAWMFGSVFILAIGLLMAGVIRFWR EISPGMPRSVEIAQASHDALTLKYLDGGHGKGCNEADDAFTLMRRRFHHFTFYGFMLCFA ATIVATGYHYVAGIEAPYPFFSVPVMLGTLGGIGLVVGPAGLLWLNLKRSPLHGDARQKP MDRGFILLLLLTSVTGLALLAGRDTSLMAILLAVHLGVVIALFLTIPYGKFAHGFYRCAA LLKWAIEKRRGKQTGVAGD >gi|283548478|gb|GG730299.1| GENE 2010 2180403 - 2180735 317 110 aa, chain - ## HITS:1 COG:no KEGG:SARI_02253 NR:ns ## KEGG: SARI_02253 # Name: not_defined # Def: putative lipoprotein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 110 1 110 110 162 85.0 5e-39 MKKLILIAVMASGLVACAQSPSPKEDSRLKEAYSACINTAQGSPEKIEACQSVLNVLKKE KQHQQFANEESVRVLDYQQCIQATRTGNDQSVNADCDKVWQEIRSKNAAQ >gi|283548478|gb|GG730299.1| GENE 2011 2180785 - 2182191 1799 468 aa, chain - ## HITS:1 COG:no KEGG:CKO_02479 NR:ns ## KEGG: CKO_02479 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 468 1 468 468 850 95.0 0 MRTFSGKRSTLALAIAGITAMSGFVVAPQAHAEGFIDDSTLTGGIYYWQRERDRKDVTDH DKYKTNLSHSTWNANLDFQSGYAADMFGIDIAAFTAIEMNESSESGHPNEIAFSSKNKGY DEDYSGDKSGISLYKAAAKFKYGPAWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANF DYGDAGALSFSYMWANEYKAPWHTEVDKFYQADKKTSVDYLHSIGAKYDFKNNLLLEAAF GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGY KVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG AMYDLKNWNLPGWAVGASYVYAWDAKPSTWQINPDAYYDKNRTIEESSYSLDAVYTLQDG RAKGTMFKLHFTQYDNHSDIPSWGGGYGNIFQDERDVKFIVIAPFTIF >gi|283548478|gb|GG730299.1| GENE 2012 2182626 - 2184293 2056 555 aa, chain - ## HITS:1 COG:STM0686 KEGG:ns NR:ns ## COG: STM0686 COG0008 # Protein_GI_number: 16764056 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Salmonella typhimurium LT2 # 1 555 1 555 555 1149 97.0 0 MSEAEARPSNFIRQIIDEDLASGKHTTIHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQG QCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWTGDIRYSSDYFDQLHAYAVELINKGLA YVDELSADEIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMA SPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL YDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR GYTAAAIREFCKRIGVTKQDNTIEIASLESCIREDLNENAPRAMAVIDPVKLVIENYPQG ESELVTMPNHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLVMGKEVRLRNAYVIK AERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPIEIRLYDRLFSV PNPGAAEDFLSVINPESLVIKHGYGEPSLQAAVAGKAFQFEREGYFCLDSRYATADKLVF NRTVGLRDTWAKAGE >gi|283548478|gb|GG730299.1| GENE 2013 2184481 - 2186430 2217 649 aa, chain - ## HITS:1 COG:STM0685_1 KEGG:ns NR:ns ## COG: STM0685_1 COG1263 # Protein_GI_number: 16764055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Salmonella typhimurium LT2 # 1 388 1 388 388 679 94.0 0 MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVPFIAQAGGAIFDNLALIFAIGV ASSWSKDSAGAAALAGAVGYFILTKAMVTINPAINMGVLAGIITGLVGGAVYNRWSGIKL PDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQNAIHAGGEWIVGAGALGSGIFGFI NRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINRFYAGDGTAGMFMSGFFPIMMFG LPGAALAMYFAAPKARRPMVGGMLLSVAITAFLTGVTEPLEFLFMFLAPLLYLLHALLTG ISLFVATLLGIHAGFSFSAGAIDYVLMYNLPAASKNVWMLVAMGLVFFVIYFVLFSAVIR MFNLKTPGREDKEDDIVTEEANSNTEEGLAQLATSYIAAVGGTDNLKAIDACITRLRLTV ADSGRVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDEMKKVVARGPVAAASGESAP AAAAPVAKPQAVANAVTVEALVSPITGDVVALEQVPDEAFASKAVGDGVAVKPTDKIVVA PAAGTIVKIFNTNHAFCLETVKGAEIVVHMGIDTVALEGKGFKRLVEEGAEVTAGQPILE MDLDFLNANARSMISPVVCSNSDDFGALVIKAEGHVVAGQTPLYEIKGK >gi|283548478|gb|GG730299.1| GENE 2014 2186774 - 2187574 793 266 aa, chain + ## HITS:1 COG:STM0684 KEGG:ns NR:ns ## COG: STM0684 COG0363 # Protein_GI_number: 16764054 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Salmonella typhimurium LT2 # 1 266 1 266 266 548 98.0 1e-156 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPLTAYKALVEMHKAGQ VSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDGDVSQ VPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEGNVNHMWTISCLQLHPKAVVVCD EPSTMELKVKTLKYFNELEAENIKGL >gi|283548478|gb|GG730299.1| GENE 2015 2187636 - 2188784 1117 382 aa, chain + ## HITS:1 COG:STM0683 KEGG:ns NR:ns ## COG: STM0683 COG1820 # Protein_GI_number: 16764053 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Salmonella typhimurium LT2 # 1 380 1 380 384 723 93.0 0 MYALTQGRIFTGHEILDDHAIVVANGLIDSVCPLAELPAGIEQRSLNGAIVSPGFIDVQL NGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDDLMKQGVRVMREYLAK HPNQALGLHLEGPWLNLVKKGTHNPGFVRQPDAALVDFLCDNADVITKVTLAPEMVPVEV ITKLVNAGIVVSAGHSNATVKEAKIGFRAGITFATHLFNAMPYITGREPGLAGAILDEAD IYCGIIADGLHVDYVNIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRNGLCV DENGTLSGSSLTMIEGVRNLVEHANIALDEVLRMATLYPARAIGVDKQLGSIAPGKVANL TAFTHDFKIIKTIVNGNEVVTE >gi|283548478|gb|GG730299.1| GENE 2016 2188793 - 2190013 293 406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 155 395 71 317 323 117 30 2e-24 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERG LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDTTLTLYDMSSKVVAEEHYPLPER TQETLEFALLNTIATFIDSCQRKIRELIAISVILPGLVDPESGVIRYMPHIQVENWGLVE ALEKRFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG NVGEIGHIQVEPLGERCHCGNFGCLETIAANASIEHRVQNLLKQGYPSRLTLDDCSIKAI CKAANKGDNLAAEVIEHVGRHLGKTIAIAINLFNPQKIIIAGEITEADKVLLPAIESCIN TQALKAFRHNLPVVRSTLDHRSAIGAFALVKRAMLNGTLLQRLLES >gi|283548478|gb|GG730299.1| GENE 2017 2190180 - 2190932 688 250 aa, chain + ## HITS:1 COG:STM0681 KEGG:ns NR:ns ## COG: STM0681 COG0647 # Protein_GI_number: 16764051 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 250 1 250 250 510 98.0 1e-144 MAIKNVICDIDGVLMHDNVAVPGAAEFLTGILEKGLPLVLLTNYPSQTGQDLANRFATAG VNVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETR SYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPW IIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWI YPSVAEIDVI >gi|283548478|gb|GG730299.1| GENE 2018 2191230 - 2192894 1773 554 aa, chain + ## HITS:1 COG:STM0680 KEGG:ns NR:ns ## COG: STM0680 COG0367 # Protein_GI_number: 16764050 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthase (glutamine-hydrolyzing) # Organism: Salmonella typhimurium LT2 # 1 554 1 554 554 1112 95.0 0 MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYACDNAILAHERLSIVDVNAGA QPLYNVKKTHILAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQG MFAFALYDSEQDAYLIGRDHIGIIPLYMGYDEHGNFYVASEMKALVPVCRTIKEFPAGSY LWSKDGEIRQYYQRDWFEYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDS SVISAITKKYAARRVEDQERSEAWWPQLHSFAVGLEGAPDLKAAQEVANHLGTVHHEIHF TVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY FHKAPDAKELHEETVRKLQALHMFDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQD KMCGNGKMEKHVLRECFESYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAEQVSDQQLET ASFRFPYNTPSSKEAYLYREIFEELFPVASAAECVPGGPSVACSSAKAIEWDEAFKTMND PSGRAVGVHQSAYK >gi|283548478|gb|GG730299.1| GENE 2019 2193947 - 2195134 1200 395 aa, chain - ## HITS:1 COG:ubiF KEGG:ns NR:ns ## COG: ubiF COG0654 # Protein_GI_number: 16128645 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 5 395 1 391 391 713 90.0 0 MIDHMTNQPTEIAIVGGGMVGGALALGLAQHGFTVTVIEHAAPAPFVADGQPDVRISAIS SASVSLLKGLGVWDTVQGMRSHPYRRLETWEWENAHVMFDAAELKLPLLGYMVENTVLQQ ALWQALEAHPKVTLRVPASLLSLHQHHDRHELELAGGEKIRARLVIGADGANSQVRKMAG IGIHAWQYAQSCMLITVQCENAPGDSTWQQFTPDGPRAFLPLFDNWASLVWYDSPARIRQ LQGLNMSQLQTEIAKHFPSRLGNVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPL AGQGVNLGFRDVDALIDVLVNARSYGESWASQQVLKRYQNRRMTDNFIMQSGMDLFYAGF SNNLQPLRIMRNLGLMAAERAGVLKRQALKYALGL >gi|283548478|gb|GG730299.1| GENE 2020 2195270 - 2196700 484 476 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229230948|ref|ZP_04355465.1| SSU ribosomal protein S12P methylthiotransferase [Desulfotomaculum acetoxidans DSM 771] # 1 443 17 462 462 191 29 2e-46 MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVF HQLGRWKLLKEKNPNLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINKVRG STSRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTT SHPIEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARP DIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK KQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGAPEM VGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAESPESVIARTRKENDLGVGIYQP >gi|283548478|gb|GG730299.1| GENE 2021 2196945 - 2197991 1264 348 aa, chain + ## HITS:1 COG:STM0669 KEGG:ns NR:ns ## COG: STM0669 COG1702 # Protein_GI_number: 16764046 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Salmonella typhimurium LT2 # 1 348 14 361 361 630 96.0 1e-180 MNIDTCEITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRDNHFKLTGRPICVTAAA DILRSLYVDTAPMRGQTQDIEPEQIHLAIKEARVLEQSADSVPEFGKAVNIKTKRGVIKP RTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFII LDESQNTTIEQMKMFLTRIGFNSKAVITGDITQIDLPRSTKSGLRHAIEVLAEVDEISFN FFHSEDVVRHPVVARIVTAYEAWEEAEQKRKAEQAAERKREAQEQEQK >gi|283548478|gb|GG730299.1| GENE 2022 2197988 - 2198461 737 157 aa, chain + ## HITS:1 COG:STM0668 KEGG:ns NR:ns ## COG: STM0668 COG0319 # Protein_GI_number: 16764045 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 259 89.0 1e-69 MSQVILDLQLACEDESGLPTESQFQGWLDAVIPQFQEESEVTIRLVDDAESHELNLTYRG KDKSTNVLSFPFEAPPGIEMPLLGDLIICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL GYDHIEDDEAEEMESLETEIMLALGYEDPYIAEKIAE >gi|283548478|gb|GG730299.1| GENE 2023 2198620 - 2199498 960 292 aa, chain + ## HITS:1 COG:STM0667 KEGG:ns NR:ns ## COG: STM0667 COG4535 # Protein_GI_number: 16764044 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorC # Organism: Salmonella typhimurium LT2 # 1 292 1 292 292 496 97.0 1e-140 MSDDNSHSSDTLTSKKGFFSLLLSQLFHGEPKNRDELLELIRDSGQNDLIDEDTRDMLEG VMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK DLLPFMRSDAEAFSMEKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVT IEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTIRALAPIEDFNDAFGTHFSDEEVDTIG GLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVRIPDDSPQPKLDE >gi|283548478|gb|GG730299.1| GENE 2024 2199523 - 2201061 1869 512 aa, chain + ## HITS:1 COG:STM0666 KEGG:ns NR:ns ## COG: STM0666 COG0815 # Protein_GI_number: 16764043 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Apolipoprotein N-acyltransferase # Organism: Salmonella typhimurium LT2 # 1 512 1 512 512 938 91.0 0 MAFAPLIERQRIRLLLALLFGACGTLAFSPYDIWPAAIVSLMGLQALTFNRRPLQSAAIG YFWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLSLYTGLFAGVLSRLWPKTT WLRVAIAAPVVWQITEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPVMGVEAINFLLMMVS GLLALALVTRNWKPLIAGVVLFALPFPLRYIQWYTLEPEKTTQVSMVQGDIPQSLKWDEG QLLNTLKIYLDATQPEMGKSQLIIWPESAIPDLEINQQRFLSMMDDLLRSKNSTLITGIV DARLNKQNRYDTYNTIITLGKDSPYSYDSSNRYNKNHLVPFGEFVPLESILRPLAPFFDL PMSSFSRGPYVQPQLHAHGFKLTAAICYEIILGEQVRDNFHPDTDYLLTISNDAWFGKSI GPWQHFQMARMRSLELARPLLRSTNNGITAVIGPQGEIQAMIPQFTRQVLTTSVTPTTGL TPYARTGNWPLWLLTALFGFGAIVISLRQRRR >gi|283548478|gb|GG730299.1| GENE 2025 2201415 - 2202368 1109 317 aa, chain + ## HITS:1 COG:STM0665 KEGG:ns NR:ns ## COG: STM0665 COG0834 # Protein_GI_number: 16764042 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Salmonella typhimurium LT2 # 11 317 2 308 308 576 96.0 1e-164 MGINASLAQTIKELDMQLRKLATAMLVMGMSAGLAHAEDAAPAAGSTLDKIAKNGVIVVG HRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNG TFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLAKKGGDIKDFADLKGKAVVVTSGTTSE VLLHKLNEEQKMDMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIV GKPQSQEAYGCMLRKDDPEFKKLMDDTIANAQTSGEAEKWFDKWFKNPIPPKNLNMNFEL SDEMKALFKEPNDKALN >gi|283548478|gb|GG730299.1| GENE 2026 2202531 - 2203271 861 246 aa, chain + ## HITS:1 COG:gltJ KEGG:ns NR:ns ## COG: gltJ COG0765 # Protein_GI_number: 16128637 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli K12 # 1 246 1 246 246 449 95.0 1e-126 MSIDWNWGIFLQQAPFGNTTYLGWLWSGFQVTVALSITAWIIAFLIGSLFGILRTVPNRF LSGIGTLYVELFRNVPLIVQFFTWYLVIPELLPENIGMWFKSELDPNIQFFLSSMLCLGL FTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLV KNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAVIMLVMNLVERKIRLP GNMGGK >gi|283548478|gb|GG730299.1| GENE 2027 2203271 - 2203945 910 224 aa, chain + ## HITS:1 COG:STM0663 KEGG:ns NR:ns ## COG: STM0663 COG0765 # Protein_GI_number: 16764040 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 224 1 224 224 357 96.0 7e-99 MYEFDWSSIVPSLPYLLDGLIITLKITVTAVVIGIVWGTILAVMRLSSFAPIAWFAKGYV NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKTDIRLISAMVAFSMFEAAYYSEIIRAGI QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF FRTASTIGERDGTQVEMILFAGAVYFVFSLSASLLVSYLKKRTV >gi|283548478|gb|GG730299.1| GENE 2028 2203945 - 2204670 556 241 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 218 45 8e-55 MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGVITV DGTVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPARAKAQKL LERVGLAAHAEKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV ELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKEEFFANPKSDRAKDFLAKIL H >gi|283548478|gb|GG730299.1| GENE 2029 2204787 - 2205722 997 311 aa, chain + ## HITS:1 COG:ECs0690 KEGG:ns NR:ns ## COG: ECs0690 COG1957 # Protein_GI_number: 15829944 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli O157:H7 # 1 311 1 311 311 601 94.0 1e-172 MALPILFDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPDKTLRNVLRMLTLLNRTD IPVAGGAVKPLMRDLIIADNVHGESGLDGPALPEPAFTPQSCTAVELMAKTLRESPEPLT IVSTGPQTNVALLLNSHPELHAKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQS GIPVVMAGLDVTHKAQIHREDTERFRAIGNPVSTIVAELLDFFFEYHKDEKWGFIGAPLH DPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVVDYYFLSGNKPNATVMVDVDRQGFV DLLAERLRYYA >gi|283548478|gb|GG730299.1| GENE 2030 2205829 - 2206311 568 160 aa, chain - ## HITS:1 COG:no KEGG:APECO1_1413 NR:ns ## KEGG: APECO1_1413 # Name: ybeL # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 160 1 160 160 286 91.0 2e-76 MNKVAQYYRELVASLSERLRNGERDIDALVEQARQRVMQTGELTRTEVEEVTRAVRRDLE EFALSYEESLDEETDSVFMRVIKESIWQELADITDKTQLEWREVFQDLSHHGVYHSGEVV GLGNLVCEKCHFHLAVYTPDVLPLCPKCGHDQFQRRPFEP >gi|283548478|gb|GG730299.1| GENE 2031 2206547 - 2209129 3488 860 aa, chain + ## HITS:1 COG:leuS KEGG:ns NR:ns ## COG: leuS COG0495 # Protein_GI_number: 16128625 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 860 1 860 860 1722 95.0 0 MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGD VIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD WSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCD TKVERKEIPQWFIKITAYADELLRDLDNLDHWPDTVKTMQRNWIGRSEGVEITFDVNGYD NTLTVYTTRPDTFMGATYLAVAAGHPLAQKAAANNPELAAFIDECRNTKVAEAEMATMEK KGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFATKYGLTIKPVI LTAEGAEPDLSQQALTEKGVLFNSGEFDGLDFEAAFNAIADQLVAKGVGERKINYRLRDW GVSRQRYWGAPIPMVTLEDGTVLPTPEDQLPVILPEDVVMDGITSPIKADPEWAKTTING MPALRETDTFDTFMESSWYYARYTCPQYNEGMLDPEAANYWLPVDIYIGGIEHAIMHLLY FRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGANGERNWVSPVDAIVERDEKGR IVKAKDAEGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQE SGVEGANRFLKRVWKLVYEHTTKGDVAALNVDALSEDQKALRRDVHKTIAKVTDDIGRRQ TFNTAIAAIMELMNKLAKAPQEDEQDRALMQEALLAVVRMLNPFTPHVCFTLWQALKGEG DIDNAPWPVADESAMVEDSTLVVVQVNGKVRGKITVPVNATEEQVRERAGQEHLVAKYLD GVTVRKVIYVPGKLLNLVVG >gi|283548478|gb|GG730299.1| GENE 2032 2209240 - 2209737 423 165 aa, chain + ## HITS:1 COG:STM0647 KEGG:ns NR:ns ## COG: STM0647 COG2980 # Protein_GI_number: 16764024 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rare lipoprotein B # Organism: Salmonella typhimurium LT2 # 1 165 33 196 196 222 75.0 3e-58 MKTMILNTGDPNGPLSRAVRNQLRLNGVTLLEDGSMRKDVTSLRLGAVSISQDTASVFQN GQTAEYQMVMSVSATVLIPGHDIYPISAKVYRSFFDNPQAALAKDNEQDLIVREMYDKAA EQLIRKLPSVHVADAQSSSADAEPATTKAAAPTSSPARVSTTLGN >gi|283548478|gb|GG730299.1| GENE 2033 2209737 - 2210768 835 343 aa, chain + ## HITS:1 COG:STM0646 KEGG:ns NR:ns ## COG: STM0646 COG1466 # Protein_GI_number: 16764023 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Salmonella typhimurium LT2 # 1 343 1 343 343 560 91.0 1e-159 MLKLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRQAAATQGFEEHHAFTLDNSTD WGEIFSLCQAMSLFASRQTLLLQLPENGPNAAINEQLASLVTLLHDDLLLIVRGNKLTRA QENAAWYTGLAKNAVQVSCQTPEQAQLPRWVAARAKLNNLQLDDAANQLLCYCYEGNLLA LAQALERLALLWPDGKLTLPRVEKAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEG SEPVILLRTIQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGDALNRLTPAQLRQ AVTLLTRTEITLKQDYGQSVWGELEGLSLLLCHKSLADVFIDG >gi|283548478|gb|GG730299.1| GENE 2034 2210761 - 2211411 600 216 aa, chain + ## HITS:1 COG:STM0645 KEGG:ns NR:ns ## COG: STM0645 COG1057 # Protein_GI_number: 16764022 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Salmonella typhimurium LT2 # 4 216 1 213 213 371 84.0 1e-103 MVDMKSLQALFGGTFDPVHYGHLKPVEILANLIGLSRVIIMPNNVPPHRAQPEASGEQRK RMVELAIADKPLFSLDERELKRDTASYTAQTLHEWREEQGPDVPLAFIIGQDSLLTFPSW HDYDTILGNTHLIVCRRPGYPLEMAQEKHQQWLEDHLTHSPEDLHNLPCGKIYLAETPWF NISATLIRERLEKGEPCDDLMPGAVLDYINQQGLYR >gi|283548478|gb|GG730299.1| GENE 2035 2211386 - 2212480 823 364 aa, chain - ## HITS:1 COG:STM0644 KEGG:ns NR:ns ## COG: STM0644 COG0079 # Protein_GI_number: 16764021 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Salmonella typhimurium LT2 # 1 364 1 364 364 545 73.0 1e-155 MSLLKSAHGGNTREAAELLGISPEQLLDFSANINPLGMPAGLKRAIVDNLDCAERYPDVD YAQLHAALAEHHQIPASWILAGNGETESIFTLVHGLKPRHAMIVTPGFAEYRRALQGGEC TIHEFALCEDDGWQLTGAILDALTSELDCLFLCTPNNPTGLLPDNHLLRAIATRCAWLGI ALILDEAFIDFIAGEPGFIPLLHENPHIWVLRSLTKFYAIPGLRLGYLVNSNPQAVAQMR SRQMPWSINAFAALAGGIILRDSAYQQATWEWLEQEGGRFDRQLQDLPGLTVYPGRANYR LLRCDRADIDLQRAMLEQHVLIRSCANYPGLDARYYRVAVRSQEENNRLLAALRQVLSGT ALVD >gi|283548478|gb|GG730299.1| GENE 2036 2212577 - 2213188 284 203 aa, chain + ## HITS:1 COG:STM0643 KEGG:ns NR:ns ## COG: STM0643 COG0406 # Protein_GI_number: 16764020 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Salmonella typhimurium LT2 # 1 200 1 200 202 325 77.0 3e-89 MRLWLVRHGETDANVAGLYSGHAPTALTARGIAQAQTVGTLLRNVPVDNVLCSELERARH TARLVLAERDLPVRIMPELNEMFFGDWEMRHHRDLAREDAENYALWCNDWQNATPTNGES FQAFSQRVERFIAQLADYKACQNLLVVSHQGVLSVLIARLLSMPAAAMWHFRVEQGCWSA IDLHDDFAVLKVLNSRAVWREGE >gi|283548478|gb|GG730299.1| GENE 2037 2213443 - 2213760 250 105 aa, chain + ## HITS:1 COG:STM0642 KEGG:ns NR:ns ## COG: STM0642 COG0799 # Protein_GI_number: 16764019 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Salmonella typhimurium LT2 # 1 105 1 105 105 186 96.0 1e-47 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR TAGLLPLGVEGENVADWIVVDLGDVIVHVMQEESRRLYELEKLWS >gi|283548478|gb|GG730299.1| GENE 2038 2213764 - 2214231 518 155 aa, chain + ## HITS:1 COG:ECs0674 KEGG:ns NR:ns ## COG: ECs0674 COG1576 # Protein_GI_number: 15829928 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 155 1 155 155 303 99.0 9e-83 MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQM LAAAGKNRIVTLDIPGKPWDTPQLATELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE >gi|283548478|gb|GG730299.1| GENE 2039 2214262 - 2216163 1876 633 aa, chain + ## HITS:1 COG:STM0640 KEGG:ns NR:ns ## COG: STM0640 COG0768 # Protein_GI_number: 16764017 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Salmonella typhimurium LT2 # 1 633 1 633 633 1253 95.0 0 MKLQNSFRDYSAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIK LVPIPPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNIQDTLDALRNVVDLTDDDIAAFK KERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVS KINDKDVDRLDKDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLK EVAPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSMPSYDPNLFVDG ISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTGLFDPGWWQL PGSEKRYRDWKKWGHGHLNITRSLEESADTFFYQIAYDMGIDRLSEWMSKFGYGQYTGID LAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGLVKV PHLLMSTAENGKQVPWVQPHEPPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFAGAPYK IAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYDKPQVAVAMILENGGAGPAV GTIMRQILDHIMLGDNNTNLPAENPAVAAAEDQ >gi|283548478|gb|GG730299.1| GENE 2040 2216166 - 2217278 1057 370 aa, chain + ## HITS:1 COG:STM0639 KEGG:ns NR:ns ## COG: STM0639 COG0772 # Protein_GI_number: 16764016 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Salmonella typhimurium LT2 # 1 370 1 370 370 615 98.0 1e-176 MTDNPNKKTFWDKIHIDPTMLLILLALLVYSSLVIWSASGQDIGMMERKVGQIAMGLVIM VVMAQIPPRVYEGWAPYLYIFCIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAV PLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS WRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGL RGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLTLYILLIMRGLWIAARAQT TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIH THRKMLSKSV >gi|283548478|gb|GG730299.1| GENE 2041 2217289 - 2218383 824 364 aa, chain + ## HITS:1 COG:rlpA KEGG:ns NR:ns ## COG: rlpA COG0797 # Protein_GI_number: 16128616 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipoproteins # Organism: Escherichia coli K12 # 1 362 1 359 362 491 85.0 1e-138 MRKQWLGICIAAGMLAACSNDDGQQQVAVAPQPAVCNGPIVEISGADPRFEPLNPTANQD YQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFDPMQLTAAHPTLPIPSYAR ITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSNNTKVRIDPIIVAQDGSLSGP GMACTTVAKQTYALPARPDLSGGGATSSAPDAGQPQNDIRPISNSTLKSEDTSGAPVNSS GFLGAPTTLAAGVLEGSEPTPAPQPVTAAPAASTAPVSAPAAVAAPAATANGNYVVQVGA VSDQTRAQQYQKRLSQQFGVPGRVVQNGAVWRIQMGPFASKAEATSLQQRLQSEAQLQSF ITGV >gi|283548478|gb|GG730299.1| GENE 2042 2218526 - 2219737 1226 403 aa, chain + ## HITS:1 COG:STM0637 KEGG:ns NR:ns ## COG: STM0637 COG1686 # Protein_GI_number: 16764014 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Salmonella typhimurium LT2 # 1 403 1 403 403 804 97.0 0 MKTTFSARFVQRMALTAALCAASLSAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL AEQNADSRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH GLDADGQYSSARDMAMIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDG IKTGHTDKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKV GKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASYVLNTTELHAPLQKNQVVGT INFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKLMFHHWFG >gi|283548478|gb|GG730299.1| GENE 2043 2219844 - 2220107 349 87 aa, chain + ## HITS:1 COG:STM0636 KEGG:ns NR:ns ## COG: STM0636 COG2921 # Protein_GI_number: 16764013 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 87 1 87 87 156 98.0 8e-39 MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYSPTVKPSSKGNYHSVSI TITATHIEQVETLYEELGNIDIVRMVL >gi|283548478|gb|GG730299.1| GENE 2044 2220197 - 2220862 680 221 aa, chain + ## HITS:1 COG:ECs0668 KEGG:ns NR:ns ## COG: ECs0668 COG0321 # Protein_GI_number: 15829922 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase B # Organism: Escherichia coli O157:H7 # 31 219 1 189 191 359 88.0 2e-99 MSIYGDAVLYQDKILVRQLGLQPYEPVSLAMHEFTDTRDENSHDEIWLVEHYPVFTQGQA GKAEHVLMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELVTLLEQTVVNT LAEIGIDAHPRADAPGVYVGEKKICSLGLRIRKGCSFHGLALNVDMDLSPFLRINPCGYA GMEMAKVSQWDSAATTESVRPRLLANILALLGNPPHEYVAD >gi|283548478|gb|GG730299.1| GENE 2045 2221069 - 2222034 899 321 aa, chain + ## HITS:1 COG:ECs0666 KEGG:ns NR:ns ## COG: ECs0666 COG0320 # Protein_GI_number: 15829920 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 646 97.0 0 MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMR KNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPLKLA QTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPSIKIETLVPDFRGRMDRAL DILTATPPDVFNHNLENVPRIYRNVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGE TNAEIIEVMRDLRSHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEAMAMGFTHAA CGPFVRSSYHADMQAKGLEVK >gi|283548478|gb|GG730299.1| GENE 2046 2222132 - 2222335 334 67 aa, chain - ## HITS:1 COG:STM0632 KEGG:ns NR:ns ## COG: STM0632 COG1826 # Protein_GI_number: 16764009 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Salmonella typhimurium LT2 # 1 67 1 67 67 76 89.0 9e-15 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGTAIKGFKKAMNDDNADANKEADGSVQA EKLSHKE >gi|283548478|gb|GG730299.1| GENE 2047 2222464 - 2223252 480 262 aa, chain - ## HITS:1 COG:ECs0664 KEGG:ns NR:ns ## COG: ECs0664 COG0388 # Protein_GI_number: 15829918 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Escherichia coli O157:H7 # 1 262 1 262 262 407 82.0 1e-113 MFVAAGQFAVGPSWEKNAETCALLMSQAAGEGVSLLVLPEALLARNDIDPDLSVKSAQLL EGGFLTRLLRESAQNAMTTILTIHVPSVPGRAFNMLVALRGGRVVAHYAKLHLYDAFAIQ ESRNVDAGDAIAPLLEVDGLKVGLMTCYDLRFPELALAHALQGADILALPAAWVRGALKE HHWATLLAARALDATCYVIAAGECGNKNIGQSRVIDPFGVTIAAAAETPALIMAEVSAER VKQVRAQLPVLINRRFAPPQLL >gi|283548478|gb|GG730299.1| GENE 2048 2223412 - 2223726 336 104 aa, chain + ## HITS:1 COG:ECs0663 KEGG:ns NR:ns ## COG: ECs0663 COG0239 # Protein_GI_number: 15829917 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Escherichia coli O157:H7 # 1 104 24 127 127 159 89.0 8e-40 MRFNPLHQAIPFGTLAANLLGAFIIGMGLAWFNRMTNIDPMWKVLITTGFCGGLTTFSTF SAEVVFLLQEGRLGWAMVNVLVNLLGSFAMTALAFWLVSASSAH >gi|283548478|gb|GG730299.1| GENE 2049 2223778 - 2223987 349 69 aa, chain - ## HITS:1 COG:ECs0662 KEGG:ns NR:ns ## COG: ECs0662 COG1278 # Protein_GI_number: 15829916 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 69 1 69 69 124 100.0 4e-29 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG PSAANVIAL >gi|283548478|gb|GG730299.1| GENE 2050 2224176 - 2224739 660 187 aa, chain - ## HITS:1 COG:no KEGG:CKO_02535 NR:ns ## KEGG: CKO_02535 # Name: pagP # Def: palmitoyl transferase # Organism: C.koseri # Pathway: not_defined # 1 187 1 187 187 327 89.0 2e-88 MIVAKRYFLIFSFLFIQLAFIPQGAAEDKGWFATFKDNVSETWRQPEHYDLYVPVITWHA RFAYDKEKTDRYNERPWGAGFGQSRWDDKGNWHGLYIMAFKDSFNKWEPIGGYGWEKTWR PLADENFRTGLGFTAGFTARDNWNYIPVPVLLPLASIGYGPATFQMTYIPGTYNNGNVYF AWLRFQF >gi|283548478|gb|GG730299.1| GENE 2051 2225202 - 2226587 1457 461 aa, chain + ## HITS:1 COG:STM0627 KEGG:ns NR:ns ## COG: STM0627 COG3069 # Protein_GI_number: 16764004 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Salmonella typhimurium LT2 # 1 460 1 460 461 631 95.0 1e-180 MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLILLIISAVMGHKVLPSSAATTGYT ATDIVEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLM IAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILSPTSGD VVLAAKAAEMPLIDFAFKTTLPISIAAIIAMAIAHFFWQRYLDKKENISHEMLDVAEITT TAPSFYAILPFTPIVGVLIFDGKWGPQLHIITILVLCMLIAAVLEFVRGFNTQKMFSGLE VAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVILTML AAMTTGSGNAPFYAFVEMIPKLAHSSGINPAYLSIPMLQASNLGRTISPVSGVVVAVAGM AKISPFEVVKRTSVPVMVGLLVVIIATEVMVPGSSSAVVGN >gi|283548478|gb|GG730299.1| GENE 2052 2226704 - 2227384 261 226 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 5 223 1 221 226 105 27 1e-20 MTEPLTLLIVEDETLLAEMHAEYIRHIPGFSQIWLAGNLAQARMMIERFKPGLILLDNYL PDGKGITLLHELTQARYPGGVVFTTAASDMETVSEAVRSGAFDYLVKPIAYERLGQTLTR YQQRRRMLAGNDSASQKQIDEMFNAYARGEPKGDLPTGIDALTLNAVLKLFADPTVHHTA ETIAQALTISRTTSRRYLEYCASRHLIIAEIIHGKVGRPQRIYHGG >gi|283548478|gb|GG730299.1| GENE 2053 2227353 - 2229014 1396 553 aa, chain - ## HITS:1 COG:STM0625 KEGG:ns NR:ns ## COG: STM0625 COG3290 # Protein_GI_number: 16764002 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Salmonella typhimurium LT2 # 1 553 1 553 553 989 89.0 0 MAEQKNKTRFPFFRSLAFPLRIFLLILVVSVLIIAALAQYFTASFEDYLTTHVRDMAMNQ AKIIASNDSIITAVKHRDYKRLATIADKLQSGTDFDYVVIGDTHSIRLYHPNPEKIGYPM QFTKPGALEKGESYFITGKGSIGMAMRAKTPIFDDDGKIIGVVSIGYLISKIDSWRSDFL LPMAGVFILLLLVLMLLSWFFAAHIRRQMLGMEPKQIARVVRQQEALFSSVYEGLIAVDP DGYITAINRSARKMLGLSSPGRKWLGKPVNEVVRPADFFTQQIAEQRQDAMVNFNGLSVI ANREAIRSGEELLGAIISFRSKDEIATLNAQLTQIKQYVESLRTLRHEHLNWMSTINGLL QMKEYDRVLAMVQGESQAQQQLIDSLRGAFADRQVAGLLFGKVQRARELGLTMTIVPGSQ LHQLPEGLDSTEFAAIVGNLLDNAFEASLRTQQGNNVVELYLSDEGDDVVIEVADQGCGV PEALREKIFEQGVSTRTDEPGEHGIGLYLIASYVRRCDGVITLEDNSPCGTLFSLFLPKV KKNNDGTINATDR >gi|283548478|gb|GG730299.1| GENE 2054 2229456 - 2230481 1053 341 aa, chain + ## HITS:1 COG:STM0624 KEGG:ns NR:ns ## COG: STM0624 COG3053 # Protein_GI_number: 16764001 # Func_class: C Energy production and conversion # Function: Citrate lyase synthetase # Organism: Salmonella typhimurium LT2 # 1 341 18 358 358 636 89.0 0 MAAIAQFLKENDLSVDTTVEVFITVTRDDRLIACGGIAGNIIKCVAICESVRGEGLALTL ATELINLAYERHCTHLFIYTKTEYESLFKQCGFSTLTSVPGIMVLMENSTTRLKRYAESL AKQRHEGKKIGCIVMNANPFTDGHRFLIQQAAAQCDWLHLFLVKEDTSRFPYEDRLDLVL KGTKDIPRLTVHRGSEYIISRATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHR FVGTEPYCTVTSQYNNDMRYWLETPTLPAPPIELVEIERLCFREMPISASWVRKLLVKKD LTAIASLVPDATLHYLQSMAERASSGAAVRQNTPALATGEK >gi|283548478|gb|GG730299.1| GENE 2055 2230478 - 2230774 347 98 aa, chain + ## HITS:1 COG:ECs0656 KEGG:ns NR:ns ## COG: ECs0656 COG3052 # Protein_GI_number: 15829910 # Func_class: C Energy production and conversion # Function: Citrate lyase, gamma subunit # Organism: Escherichia coli O157:H7 # 1 98 1 98 98 173 93.0 8e-44 MKINQAAVAGTLESGDVMIRIAPLDSQDIDLQVNSSVEKQFGDAIRATILDVLSRYNVRG VQLNVDDKGALDCILRARLEALLARAGGIPALPWEDCQ >gi|283548478|gb|GG730299.1| GENE 2056 2230771 - 2231679 1226 302 aa, chain + ## HITS:1 COG:STM0622 KEGG:ns NR:ns ## COG: STM0622 COG2301 # Protein_GI_number: 16763999 # Func_class: G Carbohydrate transport and metabolism # Function: Citrate lyase beta subunit # Organism: Salmonella typhimurium LT2 # 1 302 1 302 302 517 94.0 1e-146 MIAESLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLEDSVALREKDTARRMVY HALQHPLYHDVETIVRVNALDSEWGINDLEAVVRGGADIVRLPKTDTAQDVTDIESEILR IEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGIALGAEDYVRNLRTERSPEGT ELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLHEASHIKQLGFDGKSLINPRQIELL HNLYAPTRKELAHARLVVEAAEAAAREGRGVVSLNGKMVDSPVIERALLVISRAELSGIR EE >gi|283548478|gb|GG730299.1| GENE 2057 2231689 - 2233221 1698 510 aa, chain + ## HITS:1 COG:STM0621 KEGG:ns NR:ns ## COG: STM0621 COG3051 # Protein_GI_number: 16763998 # Func_class: C Energy production and conversion # Function: Citrate lyase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 510 1 509 509 905 91.0 0 MTQKIEQSQRQDRVATWSRHAESELSAYQSTAKAELQKQKPRDKKLCANLEDAIRRSGLQ DGMTISFHHAFRGGDLTINLVMDAIASMGFKNLTLASSSLSDCHAPLVEHIRQGVVSRIY TSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELSIDVAFLGVPSCDPSGNANGYT GKACCGSLGYARVDAENARQVVLLTEQLLTYPHNPASITQDQVDLIVQIDQVGDADKIGA DATRMTTNPRELLIARSAADVIANSGYFNEGFSLQTGTGGASLAVTRFLEDKMRSRDIHA DFALGGITATIVDLHEKGLIRKLLDVQSFDSAAAKSLARNPNHIEISANQYANWGSKGAS VDRLDVVVLSALEVDTSFNVNVLTGSDGVLRGASGGHCDTAVAAALSIIVAPLVRGRIPT LVDNVLTCVTPGSSVDILVTDHGIAVNPARPELAERLKEAGMKVVSIEWLRERAQQLTGQ PRAIEFTDRVIAVVRYRDGSVIDVVHQVKE >gi|283548478|gb|GG730299.1| GENE 2058 2233225 - 2233779 473 184 aa, chain + ## HITS:1 COG:STM0620 KEGG:ns NR:ns ## COG: STM0620 COG3697 # Protein_GI_number: 16763997 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) # Organism: Salmonella typhimurium LT2 # 1 181 1 181 183 275 82.0 3e-74 MHLLPEHATCHAVSIPGLLASRDERQARQQAWLSRHHAPLVSFTVVAPGPVKDSALTRRI FNHGVTALLALAEKSAWLVREQTALVSASGPEGLLAIEAPAHNLKLATIGLEHSHPLGRL WDIDVLTPEGEILSRRHFALPARRCLLCGQSAAECARGKTHALSDLLTQMEALLHDADSR HINQ >gi|283548478|gb|GG730299.1| GENE 2059 2233748 - 2234653 833 301 aa, chain + ## HITS:1 COG:citG KEGG:ns NR:ns ## COG: citG COG1767 # Protein_GI_number: 16128596 # Func_class: H Coenzyme transport and metabolism # Function: Triphosphoribosyl-dephospho-CoA synthetase # Organism: Escherichia coli K12 # 2 293 1 292 292 451 81.0 1e-127 MMPIPATSTSNAVLPLDLPDAYATLAWRAMLTEVNLSPKPGLVDRINNGAHKDMALEDFY RSAEAIQTWLPRFIEYGAFSAQQSPEDVLQGLRPLGMACEADMFRATAGVNTHKGSIFSL GLLCAAIGRLLQLRLTVTAETLCSTAAAFCRGLTGRELRQNNQQLTAGQRLYQQLGLTGA RGEAEAGYPLVIEHALPHYRALLAEGRDPELALLDTLLLLMSVNGDTNVASRGGAEGLRW LQQQAATLLQQGGIRTPADLEYLRQFDQQCIERNLSPGGSADLLIVTWFLAQISQVHHYH N >gi|283548478|gb|GG730299.1| GENE 2060 2234677 - 2236140 1958 487 aa, chain + ## HITS:1 COG:STM0618 KEGG:ns NR:ns ## COG: STM0618 COG0471 # Protein_GI_number: 16763995 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Salmonella typhimurium LT2 # 1 487 1 487 487 833 96.0 0 MSLAKDKIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISF IAVTICVIGSNYLLFDASELADPAFKAGKQALKWGLAGFSSTTVWLVFGAFIFALGYEVT GLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKS FPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVNKIAGIQISWLQWFLSF LPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGDELKTMGKLTRKELTLIGLVLLSLGL WVFGGKLIDATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGF IDWFANTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVP MEHLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYIAMLLLVGW PILAMWS >gi|283548478|gb|GG730299.1| GENE 2061 2236251 - 2237057 597 268 aa, chain + ## HITS:1 COG:rna KEGG:ns NR:ns ## COG: rna COG3719 # Protein_GI_number: 16128594 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonuclease I # Organism: Escherichia coli K12 # 1 268 1 268 268 458 81.0 1e-129 MTSTWRYSSLLAAFLLPVSAAQADALQAKQYADFDSYVLALSWQSGFCQSQHERNRQEPD ECRLQKELADKADFLTVHGLWPSLPKSIAARGVDNRRWMRFGCATRPIPNLPEARASRKC AAPETGLSLESAAKLSAVMPGAGGTSCLERYEYAKHGACFGFDPDVYFGTMVRLNNEVKN SEAGKFLADNYGKTVSRRAFDAAIAKSWGKESVKAVKLSCHGNPAYLTEIQLSLKTDTIN QPLSAQSFLSQPHPGNCGKQFIIDKAGY >gi|283548478|gb|GG730299.1| GENE 2062 2237099 - 2237722 560 207 aa, chain - ## HITS:1 COG:RSc1820 KEGG:ns NR:ns ## COG: RSc1820 COG1853 # Protein_GI_number: 17546539 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Ralstonia solanacearum # 1 201 6 206 207 237 56.0 1e-62 MYFYQPSQGHGLPHDPLNAIIGPRPIGWIASRDSNGRHNLAPYSFFNCFNYHPPIIGFAS SGWKDSVQNIVETGEFVWNLTTLELASAMNETSASLPHGEDEFFAAGLSKADSRIVGVPR VAQSPVNFECRLSQTLQLTTADGAPVETWLVLGEVVGIHIDETLLEEGIYQTAKAKPVLR AGGPTAYYSISETHRFDLVRPDARLQR >gi|283548478|gb|GG730299.1| GENE 2063 2237819 - 2238649 868 276 aa, chain - ## HITS:1 COG:MA0993 KEGG:ns NR:ns ## COG: MA0993 COG0596 # Protein_GI_number: 20089870 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Methanosarcina acetivorans str.C2A # 7 276 4 273 273 377 64.0 1e-104 MSQYDKLTLKDGSYLHFKDWGSGQPIVFSHGWPLTADAFEDQMLFLGSKGFRVIAHDRRG HGRSAQPWDGHNMDQYADDLAELTAHLNLKDAVHVGHSTGGGEVARYIGRHGTQRVAKAV LIGAVTPIMIKTDFNPNGVPKEVFDGIREGVINDRAAFFYELTAAFYGYNRPGAKESKAV RESFVEQGLQGSIKALYDCIHAFSETDLREDLKKMTIPTLVIHGDDDQIVPFETCGKVAA EILPDAQLKVYAGGSHGICTTHKQQINGDLFNFIQS >gi|283548478|gb|GG730299.1| GENE 2064 2238926 - 2239336 474 136 aa, chain + ## HITS:1 COG:ECs0649 KEGG:ns NR:ns ## COG: ECs0649 COG0782 # Protein_GI_number: 15829903 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1 135 1 135 136 246 93.0 9e-66 MSRPTIIINDLDAERIDRLLEQPAFAGLPIADALNAELDRAQMCSPETMPHDVVTMNSRV KFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLE VIELEYQPEAAGDYLR >gi|283548478|gb|GG730299.1| GENE 2065 2239524 - 2239952 450 142 aa, chain + ## HITS:1 COG:STM0614 KEGG:ns NR:ns ## COG: STM0614 COG0589 # Protein_GI_number: 16763991 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Salmonella typhimurium LT2 # 1 142 1 142 142 244 94.0 5e-65 MYNTIIMPVDVFEMELSDKAIRHAEFLAQEKGVIHLLHVLPGSASLSLHRFAADVRRFEE HLQHEAETRLQTMVGHFSIDPSRIKQHVRFGSVRDVVNELGEELNADVVVIGSRNPSIST HLLGSNASSVVRHATLPVLVVR >gi|283548478|gb|GG730299.1| GENE 2066 2239995 - 2240942 477 315 aa, chain - ## HITS:1 COG:PA0248 KEGG:ns NR:ns ## COG: PA0248 COG2207 # Protein_GI_number: 15595445 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 2 290 5 286 288 137 27.0 2e-32 MTTTIPTYALYGEQSEPGWENFFNVEMISLRSKPLNWKASPHIHDSLIQTLFIQSGEVDV LMNYTRMKVNGPGLILVPAQTVHGFDYRPGTEGMTITASQGPMESVMGLLAPNVLTLMHK PCVIPLDGSPEDGKIIQGFYQSLQKEMQKPRVNHKAMCISIFISILVHLTRISTLTEEQQ KFDICSRKASQINKFLLLVDQRFRQRLTVNDYSEEMGMSPGHLSRLCRITLGMSSLDVIN MRVLQEAQQELVYTSKTIKQLAAFLGFNDEAYFTRFFHKHTGVSPGLFRELALQKISTEE VCQVMGDAHEKECIT >gi|283548478|gb|GG730299.1| GENE 2067 2241007 - 2242221 867 404 aa, chain - ## HITS:1 COG:CC2325 KEGG:ns NR:ns ## COG: CC2325 COG1804 # Protein_GI_number: 16126564 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Caulobacter vibrioides # 4 394 2 390 396 187 31.0 5e-47 MRPLEGVKVVDLTSFLAAPTVARILGDWGADVIKIEPPIGDPGRTQASVFNMPYEDDENP AFDISNANKRFLCLNLKQERAKEIAWRILSTADVVVTSYRTKALERLGFSWEELHLRFPR LIFAQILGYGEQGPEKDTAGFDATAYVCRGGILGSTNERGETPINSVNGFGDFQASMCLV SGVCAALYGRTLSGRGDKVTVSLHHTALFMMSIAVTSAQYGNVYPKSRCEVANPFNNTYK TLDGRWMVICIPEYDRFFNKFMTLLGREDLVDSPEFCRIADVNLHGRNRDIIRIISEQVA KRSLDEMMQMLKQNDFAHEKGFTPDEILDDEQAWATDCLRNVEYITGNRRVLVTPPVNIG SMGPAQIRPSRGLGHDSQQILLEYGYSVEEIERLNADGAVIMPA >gi|283548478|gb|GG730299.1| GENE 2068 2242252 - 2243454 908 400 aa, chain - ## HITS:1 COG:STM1543 KEGG:ns NR:ns ## COG: STM1543 COG0477 # Protein_GI_number: 16764888 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 2 377 37 411 428 167 29.0 4e-41 MQEYGWSAMQFGWVSTAFFIGYAVTMLPAGLLADRFGGGVVLVTGTLWWAVFTFLTPLGS TLGIMMLLRILVGIGQGLLVPANFSLAAKWVPKHEAGMATGLLQIGCPTGIAVAMVLAAW IVQRWDWQAVFYVVSVPGVLWCLLWWKLGSNRPQQDKFITQGERDYILAGQVSTEISPAT QNEPLSKGDILATPSVWACALCYFCTNYLFFLFMTWLPTYFAMGRGIDLKQSAIFSMLPY LVAIFAYPLGGVVTDAACRRFGQNVGRKISPVLGLLLAGVFLILGTQANSLWSAATLISA SNFFLCFTMAAHFSIPIIFSQKDTGMLVGLNGVFGTLAGILSPVLAGWVIDVSGGQYEYA LYLGAGVAIVGAFFMLIARIRPIEKKSARVSAGGRKGFAG >gi|283548478|gb|GG730299.1| GENE 2069 2243690 - 2244856 1015 388 aa, chain - ## HITS:1 COG:CC1798 KEGG:ns NR:ns ## COG: CC1798 COG1960 # Protein_GI_number: 16126042 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Caulobacter vibrioides # 9 385 7 381 381 220 34.0 3e-57 MSILSQQQLEALKKKVRKVTETELEEIQLEVERTNVFPDSYYDVCRKNDLFRLAMPEEFG GMGLNCEQFFSVMEEFCRGPGGMRMNLHHANGLNWRIMYDHGAEDLRAKWLPLLANKDAY INFALTEADCGSGADIRTTAVKKGDKYILNGTKTLISHTDISDGSYVIAVTDENKRKKGG LTAFFIETNTPGYYIDPMPHMMGCRGAGHAYLRFENCEVPAHNIMGKEGDGLDIFMNALA HSRAMIAVTCLGMSQRFLELAIARAKDRVTFGKALASRQAIQQTLADMGTQVHALRVMLR DCAQKFDRGEDIEMVSAMCKLHGIDTVRTVSDSCLEIFGGIGYFEDNPYGPVERMYRDAR ALWFEEGPRTVQRLTIARPLIAAGGEIR >gi|283548478|gb|GG730299.1| GENE 2070 2245250 - 2246395 1023 381 aa, chain + ## HITS:1 COG:ECs2402 KEGG:ns NR:ns ## COG: ECs2402 COG1960 # Protein_GI_number: 15831656 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1 380 19 399 401 575 69.0 1e-164 MDFSLTEEQELLLASIRELITRDFPEEYFKTCDENGAFPSKFFQALAESGVGLLGIPEEL GGIPADMMTQVLVLEEIARMGAPAYIMTEGQCIHNMQRFGNAEQLAKTAEVGLTGIPAYS LAFTEPQAGSDNNRVATTYTRKNGKVYLNGQKTFITGAKDYPYMLVLARNPEPEDPKRCF TLWWVDPNMPGVKRNSLHKIGWHMVSNCEVFLDNVELEESAMVGREGYGFIHMMENFDIE RIVIAAHSLGVAECAFEDAARYANQRIQFDKNIGQFQMIQLKLTQMAIKIQNMKNMVYRT AWECDNDLPMRLSAPMCKLYCAQSACEVIDDAMQILGGLGYTNDSRVSRFWRDTRVNRIG GGTDEIMVYISARQILKQYEK >gi|283548478|gb|GG730299.1| GENE 2071 2246407 - 2247171 829 254 aa, chain + ## HITS:1 COG:ydiQ KEGG:ns NR:ns ## COG: ydiQ COG2086 # Protein_GI_number: 16129653 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli K12 # 1 254 1 254 254 305 62.0 5e-83 MKLLACYKLVAEEQDITITADRTLDTTRAGEKISPFDLNAIEEAVLLAGENDEVMALCVG GQALDNAKLRKDLLSRGPHGLYLVRDERLSVALAHETSRVIAAAAKKIGFDLLLCGEGSG DLYAQQTGLRVGEMLHLPTVNAVSHIEIHDGYVTVERTLENEIEIIDVPLPAVLCVTSDI NEPRIPSMKAILGAGKKPVTQWTADDIGWSPVAPDTEMVNIYAPQQTERKHIIIEGDGAE DIARLAEHLSKVLN >gi|283548478|gb|GG730299.1| GENE 2072 2247192 - 2248148 711 318 aa, chain + ## HITS:1 COG:ydiR KEGG:ns NR:ns ## COG: ydiR COG2025 # Protein_GI_number: 16129654 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1 318 1 312 312 386 61.0 1e-107 MSKINQVWVVSDSADRYADLLAGAKQFGEHVSAVIWDESEALQVQHADAVYVLSGKSEQQ RLENYAETLVALIQNTEKGASALRTGTLILLAATRRGKSLAARLSVLLQSALINDATSLA LENDELYAEHRMYGGLAFGREKINTPTAIVTVSSGVFEPLEENAPHQRAPIPVSYVPPQH ALLCKARRAKSVSSIDLSKARRVVGIGRGLAAKDDLHMIWELAAALNAEVGCSRPIAEGE HWMDRERYIGVSGVLLKTDVYLALGISGQIQHMVGGNGAKTIVAINKDKNAPIFQYADYG LVGDIYKVVPALTELLQR >gi|283548478|gb|GG730299.1| GENE 2073 2248194 - 2249486 892 430 aa, chain + ## HITS:1 COG:ECs2406 KEGG:ns NR:ns ## COG: ECs2406 COG0644 # Protein_GI_number: 15831660 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli O157:H7 # 1 430 1 429 429 598 69.0 1e-171 MSDEKFDAIIVGAGISGCIAAYVMAKAGLDVLVIERGDTAGSKNMTGGRLYTHSLEEIMP GFTHIAPVERKVVRERISFLTAESAVTLDYLASTPQQAPIAESWTVLRHTFDSWLMAQAE AVGAQFITGVRVDSLIRQNGRVTGVQAGDDTLEANVVLLADGVNSLLGRAIGMVPESSPH HYAVGVKEVISLPSAQIQERFGLTGNEGAAWLFAGSPSDGLMGGGFLYTNRDTLSLGLVC GLDGIEHARKTVPQMLEDFKQHPAIRPLIEGGTLQEYSAHLVPEGGIDMVPTLVENGVMI VGDAAGMCLNLGYTVRGMDLAITAANVAAQTVITAKNANDFSKEKLQDYPNALEKSAVLR DMRHYRRLPAMMENPRIFQQYPQMATDLMASLFTVNGKAPASLCSTVLAHGKKIGLINLL KDGIKGVRAL >gi|283548478|gb|GG730299.1| GENE 2074 2249483 - 2249767 115 94 aa, chain + ## HITS:1 COG:ECs2407 KEGG:ns NR:ns ## COG: ECs2407 COG2440 # Protein_GI_number: 15831661 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli O157:H7 # 3 94 6 97 97 163 76.0 6e-41 MNTVNVDVKLGTNKFRVDESHPHIILVENPDREQFRKLILACPAGLYRQDDAGNIHFDYA GCLECGTCRVLCSHTILQKWEYPQGTFGVEFRFG >gi|283548478|gb|GG730299.1| GENE 2075 2249836 - 2251158 835 440 aa, chain + ## HITS:1 COG:RSc1093 KEGG:ns NR:ns ## COG: RSc1093 COG0477 # Protein_GI_number: 17545812 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Ralstonia solanacearum # 7 431 8 432 454 302 43.0 9e-82 MSVQNQIDISTILDKHPISKRQWFIVFLGFFVLGIDGFDVTAIGYIAPALIDHWQLSKQD LGPVMMSGLLGLAAGSLISGPLADRYGRKKLIIGSVVFFGLSSLLSAGAWNLSSLTFFRF ITGLGLGAAMPNITTLVAEYAPHRYRSRLSTVIHCGFNSGAALGGILSQQLLGEFGWRAV LVAGGILPLLLALVLLRCLPESMPYLVQHAGNDARLVRLLNLFIPGIADKDTRFYTTEPQ KARASTAKSLLHPPYTLGTVALWLTLFVGLFSVYLLSSWLPLMIKDAGLTLSQAVIMGSV FQIGGMMGNFCIGIEMDRWGKHQALILTLSGSICGALILGLCTPSLFLLYALILILGFTL NGINPGCYALAAHFYPTSIRATGVGWATGIGRLGAITSAGVGSLMLAAGWTFSDVFLFLP LPLLAGALAMYCKKRTPSET >gi|283548478|gb|GG730299.1| GENE 2076 2251162 - 2252823 706 553 aa, chain + ## HITS:1 COG:STM1350 KEGG:ns NR:ns ## COG: STM1350 COG0318 # Protein_GI_number: 16764701 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 1 539 1 539 546 773 65.0 0 MTTNLKINAEHKAQYRQQGHWGDATLADYWYLSAKAYADKVAVTDNRGDNYTYKALDIAA GRLASWLIDAGIRPGDRVALQLPGWCEFTIIYLACLKSGAAIVPLLPAFRECELTWILNK CRARILFTPTSFKNGNPAEMIAALRSDLPWLEQVVAVDKLAPARTGPVLSQILNDSPPIA HHVLTHSDDLAAVLFTSGTEGHPKGVMLTHNTIIASERTFCAALNINWTDSILMPAPLAH ATGFLHGVTAPFLTGASSVLMDIFSPQECLALLAQERCTCIMGATPFVCDLLYASKAQRS SLSSLRFFLCGGTTIPGKLLQECHQAGIQLLGVYGSTESAPHAIVRPHESLAHQMNTDGR AAAGVEVRVVDRKKMTLAANNEGEEASRGPNVFVGYLDEPELTDQVLDDDGWYYSGDYCR MDKDGYIKITGRKKDVIVRGGENISSREIEDILLLHPDIHDAGVVAMPDKRLGERSCAYV VLNHPQKTLQLADIIAFFAQRRIAKYKYPEYLVVIDKLPRTASGKIQKYILRQDILQRLA SLSQETADLTTSA >gi|283548478|gb|GG730299.1| GENE 2077 2252981 - 2253397 219 138 aa, chain + ## HITS:1 COG:TP0823 KEGG:ns NR:ns ## COG: TP0823 COG2033 # Protein_GI_number: 15639809 # Func_class: C Energy production and conversion # Function: Desulfoferrodoxin # Organism: Treponema pallidum # 6 134 24 125 128 73 33.0 1e-13 MAKRDATSPIACCGKTLVALRVNDATATDALAQQHQPLMTISGGFESNTLSVTVGNPAHP MTVDHYLEWIFIYTFQGGQFKYLPPGAPPEATFALADNDAYVYCDRPICKGKLCKFNCKR GFSAYTWCNQHGLWRYTF >gi|283548478|gb|GG730299.1| GENE 2078 2253499 - 2255064 419 521 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 213 515 2 303 306 166 31 6e-39 MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLTEIAELSEKVTFKEDNTLAV RKPSFLITNPGSHQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQALLEQIRDIEGDFE FETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQNEITDRNVMGVPAVFMNGKE FGQGRMTLTEIVAKVDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGL MGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVDDYDVDVIDSQSASKLVPAAQEG GLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQNKLRSLKNVDIILNAQTTEVKGD GSKVTGLEYRDRVSGDIHSVELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETSV KGVFAAGDCTTVPYKQIIIATGEGAKASLSSFDYLIRTTVA >gi|283548478|gb|GG730299.1| GENE 2079 2255215 - 2255778 614 187 aa, chain - ## HITS:1 COG:STM0608 KEGG:ns NR:ns ## COG: STM0608 COG0450 # Protein_GI_number: 16763985 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 1 187 1 187 187 378 98.0 1e-105 MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEE LQKLGVDVYSVSTDTHFTHKAWHSSSDTIAKIKYAMIGDPTGALTRNFDNMREDEGLADR ATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAPS LDLVGKI >gi|283548478|gb|GG730299.1| GENE 2080 2256154 - 2256900 786 248 aa, chain + ## HITS:1 COG:ECs0643 KEGG:ns NR:ns ## COG: ECs0643 COG1651 # Protein_GI_number: 15829897 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Escherichia coli O157:H7 # 12 248 32 268 268 419 86.0 1e-117 MFKRTLLLALLPAIAHAEELPAPVKAIEKQGITILKPFDAPGGMKGYLGKYQDMGVTIYV TPDGKHAISGYMYNEKGENLSNALIEKEIYAPAGREMWQRMEKATWILDGKKEAPVIVYV FADPFCPYCKQFWQQARPWVESGKVQLRTLLVGVIKPESPATAAAILATKDPAKTWHDYE ASGGKMKLEIPATPSAEQMKVLNINQKLMDDLGANVTPAIYYMSKDNTLQQEVGMPDKEK MEIIMGNK >gi|283548478|gb|GG730299.1| GENE 2081 2257103 - 2258008 659 301 aa, chain + ## HITS:1 COG:STM0606 KEGG:ns NR:ns ## COG: STM0606 COG0583 # Protein_GI_number: 16763983 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 297 1 297 300 367 65.0 1e-101 MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS GKGITPTVTGINLHHHLEKDLNTLEQTINIMHGSTLKKKFIIYSPQISTFIPVKELFQFI RKDAYVEIEHHDILTSTETAEDLLAYRKTDLVLTTVPIYNRSIVCTPFKTHETILVCNGN HPRLDKLNTLAGILEEQFTMYYSEDKGIKQFQSKAEHLLANRKIGFRSDSLMSIANVIAC TDIIGMLPRAMFELYQPSLNLKEIKVDVALPSNTLYLMYNRSSLNNQSFADFINRITLDI N >gi|283548478|gb|GG730299.1| GENE 2082 2258165 - 2259388 825 407 aa, chain + ## HITS:1 COG:STM0605 KEGG:ns NR:ns ## COG: STM0605 COG3969 # Protein_GI_number: 16763982 # Func_class: R General function prediction only # Function: Predicted phosphoadenosine phosphosulfate sulfotransferase # Organism: Salmonella typhimurium LT2 # 1 407 1 407 411 738 87.0 0 MSVYKIPLSQNVLEAAQERITWTLETLPRVCVSFSGGKDSGLMLHLTATLARQLHKKINV LFIDWEAQFSCTIDYVQALREHYADVIEQFYWVALPLTTQNSLSQFQPEWQCWEPNTQWV RQPPADAITDPAYFSFYQPGMTFELFVREFADWFSEKRPAAMLVGIRADESFNRFVAIAN SHKQRFADDKPWTTAAPGGHTWYIYPIYDWKTADIWTWFAKTRLPCNPLYNLMYQAGVPT RYMRICEPFGPEQRQGLWLYHVIEPQRWAAMCARVSGVKSGGIYAGQDNHFYGHRKILKP EHLSWQEYAMLLLDSMPEQTSEHYRNKIAVYLQWYKKKGMDDIPQSQEKDIGSKDIPSWR RICKVLLNNDYWCRALSFSPTKAKNYQRYNERMKTKRQEWGLLCNND >gi|283548478|gb|GG730299.1| GENE 2083 2259373 - 2259990 592 205 aa, chain + ## HITS:1 COG:STM0604 KEGG:ns NR:ns ## COG: STM0604 COG1475 # Protein_GI_number: 16763981 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 205 1 205 205 348 85.0 4e-96 MQQRLTQELLGFLSGLSEKERIEAINEFRMAIHSVSPFREEPVDCVLWVKSDHISPNDYN PNNVAPPEKKLLLKSIEADGFTQPIVVVHSTEEEYEIIDGFHRHELGAGKAALKSRLKGY LPVACLERERHERMAATIRHNRARGRHQIGAMSEIVRELSQLGWSEEKIGKDLGMDEDEV LRLKQINGLQELFADRRFSKAWTVK >gi|283548478|gb|GG730299.1| GENE 2084 2259991 - 2261151 1095 386 aa, chain - ## HITS:1 COG:ECs0639 KEGG:ns NR:ns ## COG: ECs0639 COG0436 # Protein_GI_number: 15829893 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli O157:H7 # 1 383 1 383 386 672 86.0 0 MSNNPLIVQSKLPNLGTTIFTQMSALAQQHQAINLSQGFPDFDGPHYLQERLAYHVAHGA NQYAPMTGVQPLREAIADKTAQLYGYKPDATSEVTVTAGATEALYAAITALVRPGDEVIC FDPSYDSYAPAVELSGGVVKRIALQPPSFRVDWQEFSALLSERTRLVILNTPHNPSATVW HHADFDALWQAIKEREIFVISDEVYEHICFAGQGHASVLAHSQLRERAVAVSSFGKTYHM TGWKVGYCVAPAAISAELRKVHQYLTFSVNTPAQLALADMLREDPTHYHGLPAFYQKKRD VLVNALRDSRLEILPCEGTYFLLVDYSAVSELDDVAFCQWLTKEVGVAAIPLSVFCADSF PHKLIRLCFAKQESTLLAAAERLVLL >gi|283548478|gb|GG730299.1| GENE 2085 2261283 - 2262371 1018 362 aa, chain + ## HITS:1 COG:STM0602 KEGG:ns NR:ns ## COG: STM0602 COG0371 # Protein_GI_number: 16763979 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 362 1 362 362 587 85.0 1e-167 MSNTEIRVVTGPANYFSHTGSLSRLHDFFTPDQLSHAVWVYGERAIAAARPYLPDAFHLA DVKHLLFSGHCSETDVGQLAKDAGQDRSIVIGVGGGTLLDTAKALARRLDLTFVAIPTIA ATCAAWTPLSVWYNDAGQALHFEIFDDANFLVLVEPRIILNAPEAYLLAGIGDTLAKWYE AVVLAPQPETLPLTVRLGINGALAIRDVLLESSEQALADKQRGELTLAFCDVVDAIIAGG GMVGGLGERYTRVAAAHSVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLVT AYRRFNLPTRLAQLDVDIANRAEIDKVIAHTLRPVESIHALPVTLTPDTLRAAFEKVESF TV >gi|283548478|gb|GG730299.1| GENE 2086 2262470 - 2262667 324 65 aa, chain - ## HITS:1 COG:STM0601 KEGG:ns NR:ns ## COG: STM0601 COG2879 # Protein_GI_number: 16763978 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Salmonella typhimurium LT2 # 1 65 1 65 65 124 90.0 4e-29 MFETLSKAGKYLGQTARLMIGVPDYDNYVEHMRVTHPDQTPMTYEEFFRERQDARYGGKG GAKCC >gi|283548478|gb|GG730299.1| GENE 2087 2262731 - 2264836 2733 701 aa, chain - ## HITS:1 COG:cstA KEGG:ns NR:ns ## COG: cstA COG1966 # Protein_GI_number: 16128581 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Escherichia coli K12 # 1 701 1 701 701 1265 97.0 0 MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCVYLIAYRFYGLYIAKNV LALDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWL LAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAM IVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRIGEVSVIGLVFLVFAIISGGWVA ESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI MRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQA CFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGTADVVASAAQVVSSWG FAITPDTLHQIANEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEA LFILTAVDAGTRAARFMLQDLLGVVSPSLKRTDSLPANLLATALCVLAWGYFLHQGVVDP LGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQK AFSPDAKIGFLAIANKFQAMIDSGNIPAQYTQSQLTQLVFNNRLDAGLTIFFMVVVVVLG LFSIKTALAALKEDKPTSKETPYEPMPENVEEIVAQAKGAH >gi|283548478|gb|GG730299.1| GENE 2088 2265020 - 2265433 423 137 aa, chain - ## HITS:1 COG:ybdB KEGG:ns NR:ns ## COG: ybdB COG2050 # Protein_GI_number: 16128580 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli K12 # 1 137 1 137 137 261 94.0 4e-70 MIWKRHLTLDELNATSHNTMVAHLGINYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAA LAETLGSMAGYLMTRDGQCVVGTELNATHHRAVSQGKVRGVCQPLHLGRQNQSWEIVIFD EQGRRCCTCRLGTAVMG >gi|283548478|gb|GG730299.1| GENE 2089 2265436 - 2266191 713 251 aa, chain - ## HITS:1 COG:STM0598 KEGG:ns NR:ns ## COG: STM0598 COG1028 # Protein_GI_number: 16763975 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 1 251 1 251 251 422 90.0 1e-118 MGEFDFAGKTVWVTGAGKGIGYTTALAFVDAGAKVIGFDREFSRQAYPFATEVLDVADAD AVAEVCQRVLQTSERLDVLVNAAGILRMGATDALSAEEWLQTFAVNVGGAFNLFQQTMAQ FRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGCGVRCNVVSPGST DTDMQRTLWHSDDAEQQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQD IVVDGGSTLGA >gi|283548478|gb|GG730299.1| GENE 2090 2266191 - 2267048 1005 285 aa, chain - ## HITS:1 COG:STM0597_1 KEGG:ns NR:ns ## COG: STM0597_1 COG1535 # Protein_GI_number: 16763974 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate hydrolase # Organism: Salmonella typhimurium LT2 # 1 215 1 215 215 411 90.0 1e-115 MAIPKLQAYALPTALDVPANKVDWAFEPERAALLIHDMQDYFIGFWGDNCPMMEQVVANI AALRQFCKEHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKIVEALAPDEADTL LVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD FSRDEHLMSLKYVAGRSGRVVMTQELLPTPVPTSKEALRSVILPLLDESEEPMDDENLID YGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWTLLSREVK >gi|283548478|gb|GG730299.1| GENE 2091 2267062 - 2268672 1676 536 aa, chain - ## HITS:1 COG:entE KEGG:ns NR:ns ## COG: entE COG1021 # Protein_GI_number: 16128577 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Peptide arylation enzymes # Organism: Escherichia coli K12 # 1 536 1 536 536 998 89.0 0 MSIPFTRWPEDFARRYREKGYWQDLPLTDILTRHADSDRTAVIDGERHLSYRQLNQATDN LACSLRRQGIKPGETALVQLGNVAELYITFFALLRLGVAPVLALFSHQRNELNAYARQIE PALLIADRQHALFSGDDFLNTFVAEHNSVRVVQLRNDEGEHNLQTAIDRPAVDFTATPSP ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSNEICRFTGETRYLCAIPAAHNYAMSS PGALGVFLAGGTVVLAADPSATLCFPLIERHQVNVTALVPPAVSLWLQAIAEWGSNAQLA SLTLLQVGGARLSASLAARIPSEIGCQLQQVFGMAEGLVNYTRLDDSPERIINTQGRPMC PDDEVWVADADGNPLPQGATGRLMTRGPYTFRGYFKSPEHNASAFDANGFYCSGDLIAID QDGYITVQGREKDQINRGGEKIAAEEIENLLLRHPMVIHAALVSMDDELMGEKSCAWLVV KAPLRAVQVRRFLRDQGVAEFKLPDRVECVESLPLTAVGKVDKKQLRQWLASRSLA >gi|283548478|gb|GG730299.1| GENE 2092 2268682 - 2269857 1142 391 aa, chain - ## HITS:1 COG:STM0595 KEGG:ns NR:ns ## COG: STM0595 COG1169 # Protein_GI_number: 16763972 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Salmonella typhimurium LT2 # 1 391 1 391 391 668 84.0 0 MDTSLAEEKTQTMPTLASDSFFFMSPYRSFTTSGCFARYAEPAIDGDSPDSPFQQNMHAL FADAKSQGIANPIMVGAIPFDTRQPSSLFIPQSWQSFSRTAKQQSSRYFDGHQALNVVER KAIPEQDFFEEMVARAAALTATPEVDKVVLSRLIDITTDANIDSGALLERLVAQNPASYN FHVPIEDGGVLIGASPELLLRKEGDHFSSLPLAGSARRQPDDVLDREAGIRLLASEKDRH EHDLVTQAMKAVLRDRCRELQLPSSPQLVTTPTLWHLGTPFEGKANAQENALTLACLLHP TPALSGFPHQVARKLIAELEPFDRELFGGIVGWCDAEGNGEWVVTIRCAKLLRNQVRFFA GAGIVPASSPIAEWRETGAKLSTMLNVFGLH >gi|283548478|gb|GG730299.1| GENE 2093 2270045 - 2271001 1005 318 aa, chain + ## HITS:1 COG:STM0594 KEGG:ns NR:ns ## COG: STM0594 COG4592 # Protein_GI_number: 16763971 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe2+-enterobactin transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 318 1 318 318 506 83.0 1e-143 MRLPSFFRPVLLLAGLFISGISLGHAADWPRQVTDSRGTHTLEHKPQRIVSTSVTLTGSL LAVDAPVIASGATTPNNRIGDAQGFLRQWSDVARERKLSRLYIGEPSAEAVAAQMPDLIL VSATGGDSALALYDQLSAIAPTLIINYDDKSWQSLLTQLGEITGQEQQAAARIAEFDKQL QAVKQRITLPPQPVSALVYTAAAHSANLWTPESAQGKLLEQLGFTLASLPAGLHTSQSQG KRHDIIQLGGENLAAGLNGEALFLFAGDSQDADAIYANPLLAHLPAVQNKRVYALGTETF RLDYYSATLLLQRLSTLF >gi|283548478|gb|GG730299.1| GENE 2094 2271056 - 2272294 1433 412 aa, chain - ## HITS:1 COG:STM0593 KEGG:ns NR:ns ## COG: STM0593 COG0477 # Protein_GI_number: 16763970 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 408 1 408 414 540 91.0 1e-153 MNRQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQIQMMTQSTWQVGLSVTL TGSAMFIGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWD GFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMLGGLLLATGGVAWNYG LAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAAFRFLLASPLIGGIALLGGLLTMAS AVRVLYPALAINWQMSSAQIGLLYAAIPLGAAVGALTSGQLAHSLRPGLIMLGSTVASFL AIGLFGLMPVWQLGVVCLALFGWLSAVSSLLQYTLLQTQTPEAMLGRINGLWTAQNVTGD AIGAALLGGLGAMMTPVASASVSGFGLAIVGLLLLLLLGEVRRFRQEPVNAG >gi|283548478|gb|GG730299.1| GENE 2095 2272404 - 2273411 1204 335 aa, chain + ## HITS:1 COG:STM0592 KEGG:ns NR:ns ## COG: STM0592 COG0609 # Protein_GI_number: 16763969 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 334 1 334 335 426 90.0 1e-119 MSCSVSATRAFAVPGLLLLLVLTTVLSLVIGAKSLPASVVLDALTGSCQSADCTIVLDAR LPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNSGASFAIVLGASLFGFSSPQEQ LLMAFSGALVASLIVAFTGSQGGGQLSPVRLTLAGVALGAVLEGLSTGIALLNPDVYDQL RFWQAGSLDIRSLQTLKVVLAPTLIAAAVALFLSRALNSLSLGSDTATALGSKVARTQFI GLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPSLLLIADIIG RVIVPGELRVSVVSAFIGAPVLIFLVRRKSRGGGA >gi|283548478|gb|GG730299.1| GENE 2096 2273411 - 2274400 1149 329 aa, chain + ## HITS:1 COG:STM0591 KEGG:ns NR:ns ## COG: STM0591 COG4779 # Protein_GI_number: 16763968 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterobactin transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 329 1 329 329 424 90.0 1e-118 MHLSRRLIISSLLLVAGCLAVGLWSLRSGVVTLETQQIIAALFGDAPRSITLVVTEWRLP RVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQHLTAIALA AMLGGVLTSLVVWALAWRNGIDTFRLIIIGIGIRAMLVAFNTWLLLKASLETALTAGLWN AGSLNGLTWAKTWPSAPLIIVMLVCAALLVRRMRLLEMGDDSARALGVSVERSRLMMMLV AVVLTAAATALAGPISFIALVAPHIARRLSGTSRWGLTLSALCGALLLLMADLRAQQLFM PYQLPVGVVTVSLGGIYLIVLLIQESRKK >gi|283548478|gb|GG730299.1| GENE 2097 2274397 - 2275197 201 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 8 232 9 228 309 82 25 1e-13 MIDSVARLRGDQLTLGYGKFTVAENLNVSIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA HGKVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRQED ETAVNTAMQATGIAHLAAQSVDTLSGGQRQRAWIAMVLAQETSIMLLDEPTTWLDISHQI DLLELLSELNREKGYTLAAVLHDLNQACRYATHLIALRDGKIIAEGAPKEIVTAELIEKI YGLRCMIIDDPVAGTPLVVPLGRNNK >gi|283548478|gb|GG730299.1| GENE 2098 2275243 - 2276376 1112 377 aa, chain - ## HITS:1 COG:STM0589 KEGG:ns NR:ns ## COG: STM0589 COG3765 # Protein_GI_number: 16763966 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Salmonella typhimurium LT2 # 1 377 1 378 378 573 78.0 1e-163 MSSLNIKQDNVSEFTAYPQPTAQANEIDLINLVEILWRARTKIVATVFAFACVGILVSFL LPQKWTSQAIVTPAEPVQWQNLENTLTKLRVLDMDINVSRGDVFNLFIKKFQSPSLLEEY LRSSPYVMEQLKGADIDEMDLHRAIVRLSEKMTAVDSNAGKKNETSLYTAWTLSFTAPQA EEAQAVLQGYIHYISDIVVKETLEDIRNKLSIKTSYEKERLEMDRVRLKNQLEANIQRLN YSLEIANAAGIKKPVYSNGQAVKDDPDFSISLGADGITRKLEIEKSVTDVAEINGELRNR QYHVDQLLAMNVSDVKFTPFKYQLSPSLPVKKDGPAKSMIVILAALLGGMVACGGVLLNY AMVSRKQKMTFIEQQLV >gi|283548478|gb|GG730299.1| GENE 2099 2276606 - 2280496 3133 1296 aa, chain - ## HITS:1 COG:STM0588_1 KEGG:ns NR:ns ## COG: STM0588_1 COG1020 # Protein_GI_number: 16763965 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Salmonella typhimurium LT2 # 1 1061 1 1061 1061 1697 81.0 0 MTQRLPLVAAQPGIWMAEKLSTLPSAWSVAHYVELTGELNAPLLAKAVVAGLEQADTLRM RFSEDNGDIWQWVDPTLTFAQPEILDLREKANPHDAARALMQADLQQDLRADGGKPLVFH QLIQVGDKRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAWQSGESTPDSPFTPFAEVVEE YLQYRHSEAWQRDGAFWTEQRRQLPPPASLSNKPLPGRSASADIIRMKLTAPEGSFRQLA ARMPDVQRADLALALVALWLGRLCSRMDYAAGFIFMRRMGSAALTSTGPVLNVLPFAVRL DAAESLPALALRLAGQLKKMRRHQRYDAEQIVRDSGRAAGAEPLFGPVLNVKIFDYQLNI PGVQAQTHTLATGPVNDLELALFPDENGGLSIEILANKQRYEAETLAQHASRLIALIEQF ANNPSLCCGDAGMLLPTEHERLEKINATTVEIPSTTLSALVAEQAEKTPDATALADARYQ FSYREMRQQVVALAQVLRERGVRPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYP DDRLRMMLEDAKPKLLIATDEQLARFSDIPGLESLCYNAPLPAGEAAPLALSQPGHTAYI IFTSGSTGRPKGVMVGQTAIVNRLLWMQDRYPLTAEDVVAQKTPCSFDVSVWEFFWPFIA GAKLVMAEPEAHRDPLAMQQFFAQYGVTTTHFVPSMLAAFVASLTPESAQESCASLKRVF CSGEALPADLCREWELLTHVPLHNLYGPTEAAVDVSWYPAWGEALAAVTGNSVPIGYPVW NTGLRILDAMMRPVPFGVAGDLYLTGIQLAQGYLGRADLTASRFIADPFNAGERMYRTGD VARWLENGAVEYLGRSDDQLKIRGQRIELGEIDRAMQQLPDVEHAVAHACVFNQAAATGG DARQLVGYLVSQSGLPLDTSALRERLRAKLPAHMVPTVLLQLAELPLSANGKLDRKALPM PQLTSRTSGRAPRAGTETIIAQSFAALLDCEVNDVEADFFALGGHSLLAMKLAAQLSRVF ERQVTPGQVMVASTVEQLSALLESNDDEQSQRLGFETLLPLRESHGPALFCFHPASGFAW QFSVLSRYLSPQWSIIGIQSPRPDGPMQTAENLDAVCDHHLATLLSQQPHGPYYLLGYSL GGTLAQGIAARLHARGEEVAFLGLLDTWPPETQNWQEKEANGLDPAVLAEIAREREAFLA AQQGNASDALFSAIEGNYADAVRLLTTAHSVPFAGHATLFVAERTLPQGVSPESSWSPWI ASLDVYRQDCAHVDIISPTSFETIGPVISALINKSV >gi|283548478|gb|GG730299.1| GENE 2100 2280493 - 2280711 162 72 aa, chain - ## HITS:1 COG:STM0587 KEGG:ns NR:ns ## COG: STM0587 COG3251 # Protein_GI_number: 16763964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 72 1 72 72 97 77.0 5e-21 MEFSNPFDNPQGQFYILQNPQRQFSLWPQQCSLPAGWQVACEPQSQEACQQWLDTHLNTL TPANYAEVQEAQ >gi|283548478|gb|GG730299.1| GENE 2101 2280742 - 2281959 826 405 aa, chain - ## HITS:1 COG:STM0586 KEGG:ns NR:ns ## COG: STM0586 COG2382 # Protein_GI_number: 16763963 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Salmonella typhimurium LT2 # 6 405 5 404 404 603 77.0 1e-172 MAVTTLKTGSDAWWQSKKGPEWEREENGNYRVTFWWRDPQGTEKESAIRRVWVYITGVTD HHQNVPPQSMQRINGTNVWCWSISLSANWRGSYCFIPTARDDIFTALAVGEAPDRTALRE GWRQLLPQAIADPLNPQSWRGGRGHAVSALEMPEAPVQPGWDCPENPDSPAVCLQWHSER LGNTRRVWVFTTGESRPEERPLAILLDGQFWAQSMPVWPALTSLTRRGDLPPAVYLLIDA IDTPHRSRELPCNADFWLAVQQELLPLVKTSTAFSDDPQRTVIAGQSFGGLSALYAGLNW PARFGCVLSQSGSYWWPHRGGHQDGAIIEQLKAGTLHVQGLRIVLEAGLREPIIFRANQA LYHQLPSAPQSIFWRQVDGGHDALCWRGGLMQGLMTLWQPLTHTI >gi|283548478|gb|GG730299.1| GENE 2102 2282213 - 2284486 2755 757 aa, chain + ## HITS:1 COG:STM0585 KEGG:ns NR:ns ## COG: STM0585 COG4771 # Protein_GI_number: 16763962 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Salmonella typhimurium LT2 # 1 757 1 751 751 1336 90.0 0 MNNKIHSLALLVNLGIYGVALPAMAEDQTDNAAVSHEDTIVVTAAQQNLQAPGVSTITAD EIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSR NSVRQGWRGERDTRGDTAWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSNEWH GSWDTYFNAPEHKDEGSTKRTNFSLNGPMGGDFSFRLYGNLDKTQADAWDINQGHQSERT GTYANTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTNTNQLVK DNYGKETNRLYRQNYSLTWNGGWDNGVTTSNWAQYEHTRNSRTPEGLAGGTEGIFDPNAS QKYVDADLNDVMLHSEISIPLDLLVNQNLTLGTEWNQQRMKDMLSNSQTFMGGDIPGYSS TNRSPYSDAEIFSLFAENNMELTDSTMLTPGLRFDHHSIVGDNWSPSLNLSQGLGSDFTL KMGIARAYKAPSLYQLNPNYILYSKGQGCYATGSATGIGCYMMGNDDLKAETSINKEIGL EFKRDGWLAGVTWFRNDYRNKIEAGTVPFDRTSITSKGKTTYTDIYQWENIPKAVVEGLE GTLNVPVSETVNWTNNITYMLQSKNKETGERLSIIPEYTLNSTLSWQAREDLSLQSTFTW YGKQQPKKYDYQGKPVTGSSASEVSPYSIVGLSATWDVTKNVSLTGGVDNVFDKRLWREG NAQTTGDIVTGNYMAGAGAYTYNEPGRTWYMSVNTHF >gi|283548478|gb|GG730299.1| GENE 2103 2284535 - 2285188 269 217 aa, chain + ## HITS:1 COG:STM0584 KEGG:ns NR:ns ## COG: STM0584 COG2977 # Protein_GI_number: 16763961 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phosphopantetheinyl transferase component of siderophore synthetase # Organism: Salmonella typhimurium LT2 # 1 216 1 215 234 256 62.0 3e-68 MRTTHTPLPFADHTLHFVGFDPASFHEHDLLWLPHHAQLSASGRKRKAEHLAGRIAAVHA LGEFGHKTVPGIGAQRQPVWPQALFGSISHCASTALAVVSTHPVGVDIETIFTPQTAVEL SDVIIDNHERQIMHHASLPFPLALTLAFSAKESLYKAFSAYTTHLPGFTSANVIALTPTQ LTLQIQPLFSPNLAGRRINVRWCQRDRQVITLCDVIF >gi|283548478|gb|GG730299.1| GENE 2104 2285178 - 2286875 1018 565 aa, chain - ## HITS:1 COG:YPO1955 KEGG:ns NR:ns ## COG: YPO1955 COG1670 # Protein_GI_number: 16122201 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Yersinia pestis # 5 230 67 293 299 201 43.0 3e-51 MPEINLYGQTVGDVVPDWKGAAVLPREELVGLYCRLVPLDADSHAADLFDAYAQAPDDRD WTWLASSRPTSVEATVGWIEAKSTDASLIPYAVVEQRSGRAVGLVCFMAIEREHGSVEIG HVTWSPRMKNTVLGTESVWLLLRQAFASGYRRVEWKCDSLNTASRRAAERLGFIFEGRFR QKIVRKGRNRDSDWLSIIDGEWPQRDAALQRWLAVDNFDANGQQRRSLAECFSCETVNVE TVQTQRQDYQQRWQQEYGPVAQTPPAPLADFLAAQPHNPNPVYDTLSSRAGLAALTKANV STSKPMAAIINTEVDTGKRRIPVRIYRPTLTGEPKVVVFIHGGGHLSGSVEVYDPIARHL AMATGNTVVSVDYRRAPENPYPAGLADAKAAVENVWSLLDSQHIPYTRQLTLIGDSGGGA FSATLAASFSREQPGFIQRLVLIYPSLDYTLNWPSVQENGSGKLLDESKIRWYFQQYFRN GEDRKQASPLYLPLGQNFPPTLVFSGGLDPLRDEGFAFVARLQAEGISVQHEHFPGMTHA YLMLEDKVTQAAQATYQAIGEFVKK >gi|283548478|gb|GG730299.1| GENE 2105 2287020 - 2288138 828 372 aa, chain + ## HITS:1 COG:STM0583 KEGG:ns NR:ns ## COG: STM0583 COG2170 # Protein_GI_number: 16763960 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 372 1 372 372 669 82.0 0 MPLPDFHVSDPFTLGIELEMQVVNPPGYDLSQDSSRLIDAIKPQLTAGEVKHDITESMLE MATGVCRNIDQADAELSAMQQIIMQVAAEHHLAICGGGTHPFQKWQRQEVCDDERYRRNL ENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSRFVPHFIALSAASPYMQTSDTQFAC ARLNIFSGFPDNGPMPWINSWQEFTGLFRRLAYTSMIDSIKDLHWDIRPSPHFGTVEVRV MDTPLTLRHAVNMAGLIQSIAHWLLTQRPFKHQERDYLLYKFNRFQACRFGMAGIVTDVN TGEGHRLADDTLRLLENVAASADKVGATSAIEALRLQVKHGHDEAQNMRNFVAEGGSLSG LVKKHCEIWAGR >gi|283548478|gb|GG730299.1| GENE 2106 2288205 - 2288453 381 82 aa, chain + ## HITS:1 COG:no KEGG:CKO_02586 NR:ns ## KEGG: CKO_02586 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 82 1 82 82 108 85.0 7e-23 MKHPLESLMTAAGILLLAFLSCLLLPAPSLGLVLAQKLVATFHLMDLNQFYTLLFCLWFL LLGVIEYFVLRYVWRRWFSLAN >gi|283548478|gb|GG730299.1| GENE 2107 2288475 - 2288816 422 113 aa, chain - ## HITS:1 COG:STM0581 KEGG:ns NR:ns ## COG: STM0581 COG2207 # Protein_GI_number: 16763958 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 113 1 113 113 210 93.0 5e-55 MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYIRERKL LLAARDLRDTDQKVYDICLKYGFDSQQTFTRIFTRTFSQPPGAYRKENHSRTH >gi|283548478|gb|GG730299.1| GENE 2108 2288834 - 2289946 1059 370 aa, chain - ## HITS:1 COG:XF1739 KEGG:ns NR:ns ## COG: XF1739 COG2220 # Protein_GI_number: 15838340 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Xylella fastidiosa 9a5c # 28 365 32 368 385 326 46.0 4e-89 MKPLTVCVVVIMLIAATASLPFVLNAGFGQAPQGAQLSQVEQSPHYRDGQFHNQLPTPGY TGNKGMLAAWWEFLVAKRENARPAQPLPLVATDLAGLSPQQDTLVWLGHSSWYLQLAGQR ILIDPVFSNYAAPFSFLNKAFAGDYPWTAQAMPEIDLLIISHDHYDHLDLATIKALMPKI KRVITPLGVGSHLRYWGMRSEIIEERDWNQSVRVTDSLIVHVLPARHFSGRGIKRNQTLW ASFMFETPEQNVYYSGDSGYGPHFKAIGEQFGAVDLAIMENGQYDQDWKFIHMMPEETAQ AAADLHAKAVVPGHAGRFVLAKHTWDEPYKRLAFASRHQDYRLLTPMLGEPVILSEPDQQ FTAWWQQATQ >gi|283548478|gb|GG730299.1| GENE 2109 2290136 - 2290717 501 193 aa, chain + ## HITS:1 COG:STM0580 KEGG:ns NR:ns ## COG: STM0580 COG1309 # Protein_GI_number: 16763957 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 193 1 193 193 310 83.0 1e-84 MARPKSEDKKLALLEAATTAFAQSGIAASTAVIARNAGVAEGTLFRYFATKDDLINELYL FLKHDLCQSMMANLDRSVTDAKTMTHYIWNSYISWGLNHTCGHRTIRQLAVSEKISKETE QQADDMFPELRDLCHRSVRPEFMSDEYRAFGDGLFLSLAETTMEFAARNPARASEYISMG FEAMWRALTHEEK >gi|283548478|gb|GG730299.1| GENE 2110 2290717 - 2291085 322 122 aa, chain + ## HITS:1 COG:STM0579 KEGG:ns NR:ns ## COG: STM0579 COG2315 # Protein_GI_number: 16763956 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 121 1 121 122 203 77.0 5e-53 MDGQTLHASAKRIALELPFTEHCWPFGPEYDVFRVGGKIFMIIMAHRGRPLVNLKSEPQK ALLNQQIYRSIEPGYHMNKKHWISVYPGDDINESLLTELVNDSWHRVVDGLPKRDQKRLR PG >gi|283548478|gb|GG730299.1| GENE 2111 2291334 - 2291987 829 217 aa, chain + ## HITS:1 COG:STM0578 KEGG:ns NR:ns ## COG: STM0578 COG0778 # Protein_GI_number: 16763955 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Salmonella typhimurium LT2 # 1 217 1 217 217 382 88.0 1e-106 MDIVSVALKRYSTKAFDPNKKLTAEQAEKLKTLLQFSPSSTNSQPWHFIVASTDEGKARV AKSAAGGFVFNERKMLDASHVVVFCAKTAMDDAWLERVVDQEERDGRFATPEAKAANHKG RTFFADLHRKDLKDDNHWMAKQVYLNVGNFLLGVAAMGLDAVPIEGFDAAVLDAEFGLKE KGFTSVVVVPVGHHSVEDFNATLPKSRLPQETTLTEV >gi|283548478|gb|GG730299.1| GENE 2112 2292029 - 2292895 693 288 aa, chain - ## HITS:1 COG:PA1263 KEGG:ns NR:ns ## COG: PA1263 COG1396 # Protein_GI_number: 15596460 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 19 285 48 314 314 284 54.0 1e-76 MAVIAQQESAVILPDDSRKQLGAFLRARRENLDPQRLGLPRIGRRRTPGLRREEVAMLAN VGVTWYTWLEQGREVNPSQAVLLNVASALQCSPLETRHLFVLAGLTPPESTPVRVCEGIA PGTRKMLDSLMPQPASIQKPSFDIVAWNDSFCRLMGVDFSTLPSEDRNCIYLYLTNETWR SRIENCDVLPTFVSYFRAAMAEHRSDPVWENKLARFFAASSEFEALWHQRYDVRGVENQV KNFVHPQLGRFSLQQMYWYSAPRNGSRLLVYLPMDEAGEQALAWLNRQ >gi|283548478|gb|GG730299.1| GENE 2113 2293063 - 2294442 1234 459 aa, chain + ## HITS:1 COG:PA1262 KEGG:ns NR:ns ## COG: PA1262 COG0477 # Protein_GI_number: 15596459 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 1 454 23 477 480 389 57.0 1e-108 MLPLIDTSITNVALDSITQSLQASTTQLELIVALYGVTFAVCLALGSKLGDNYGRRRLFM TGVVLFGIASLLCGMANSIHMLLAARVLQGAGAALIVPQILATLHVTLKGTAHARAISLY GGIGGIAFIVGQMGGGWLVSADIAGLGWRNAFFINVPICLLVLMFSKRYVPETTRETRTR IDWLGTSSLAAILCCLLFPMALGPETGWPWQTQVALVAILPLGWWMRSNALRQEQNGQHP LLPPRLLKLSSIRFGVLIALLFFSAWSGFMFCMALTLQAGLGMAPWESGNSFIALGAAYF ISACYAPRLIARYSTGRILLTGLVIQIVGLIGLMLTFWYSGMHTTAITLVPATAFIGYGQ ALIVNSFYRIGMRDIATHDAGAGTTILSTLQQATLGLGPAVLGALFLHLQQHYHGDYTRS VIGFLAVEATMMTVLLLTTLLFRRTLNINPVCASIAAKP >gi|283548478|gb|GG730299.1| GENE 2114 2294514 - 2295758 1072 414 aa, chain + ## HITS:1 COG:STM0569 KEGG:ns NR:ns ## COG: STM0569 COG0668 # Protein_GI_number: 16763946 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Salmonella typhimurium LT2 # 1 413 1 414 415 753 92.0 0 MQELISQVEELGIEINHTTSLVMIFGIIFITAIIVHVILHWVVLRAFEKRANASSRLWLQ IITQNKLFHRLAFTLQGIIVNIQAALWLQKGSEAAEILVTCAQLWIMMYALLSLFSLLDV ILNLSQKLPAASQLPLKGIFQGIKLIGAIIVGILMISLLIGQSPAILISGLGAMAAVLML VFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPT WSLVSDSFKNWSGMSASGGRRIKRSISIDATSIHFLDEDERQRLHKAHLLKPYLTTRHQE IDEWNQQLDAPESVLNHRRMTNIGTFRAYLNEYLRHHPRIRKDMTLMVRQLAPDDHGLPI EIYAFTNTVVWLEYESIQADIFDHIFAVIEEFGLRIHQSPTGNDIRALSGTFQR >gi|283548478|gb|GG730299.1| GENE 2115 2295813 - 2297207 1648 464 aa, chain - ## HITS:1 COG:STM0568 KEGG:ns NR:ns ## COG: STM0568 COG1113 # Protein_GI_number: 16763945 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Salmonella typhimurium LT2 # 1 463 1 463 464 812 95.0 0 MKNASTASDTSVSDAASTNEPTLQRGLQNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAV LLGYGVAGVIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGM AELTAAGIYMQYWLPDVPTWIWAAAFFVIINAVNLVNVRLYGETEFWFALIKVLAIIGMI GFGLWMLFSGHGGEHASIDNLWRYNGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAQ DPQKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASAL NFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPVNSLFLSGAITSLVV LINYVLPQKAFSLLMALVVATLLLNWIMICLAHLRFRAAMRRKGRDTQFKALLYPAGNYL CIAFLGMILVLMCTMDDMRLSAILLPVWILFLFVAFKLLRRKSR >gi|283548478|gb|GG730299.1| GENE 2116 2297501 - 2298676 1108 391 aa, chain + ## HITS:1 COG:STM0567 KEGG:ns NR:ns ## COG: STM0567 COG1076 # Protein_GI_number: 16763944 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Salmonella typhimurium LT2 # 1 391 1 391 391 464 81.0 1e-130 MNKIIKRLEIVKSAIELEDEDIIFQQVAHLKNEPLSVVPGTIVQAIEARRFNDALREITA WLQSQRAISTWQDPAIAASKLELKALETQLRDLIDKRNTRIQILDDFNDLYHLRLGPLMS RILELRKQLAASAQRKQEAERKRREKDYQSCQHYISQAVDQLTRLKQHWMNLNSDSHESV EIRQRIQQQTELITALLAEIRELENDFSRQDDGATRRAQEEASHEYDEYQEQQQDAQHRF TRDQRLSPDERSELKRLWRQASRLCHPDVVADDLKEKAHQMMVQLNQARQNADLAAVRAL LTQLQSGLEPMMASDRLNDLQHLRSKIQQLREQINALLNEISELEAENAWRLASSVTDKE AYFSDQQRALTEIRNTLEQQVHQVEQELLAG >gi|283548478|gb|GG730299.1| GENE 2117 2299293 - 2299871 408 192 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283834140|ref|ZP_06353881.1| ## NR: gi|283834140|ref|ZP_06353881.1| transcriptional regulator, LuxR family [Citrobacter youngae ATCC 29220] transcriptional regulator, LuxR family [Citrobacter youngae ATCC 29220] # 1 192 1 192 192 369 100.0 1e-101 MSKAIFLGDSLYPWLGMREILRGSSLYIDIAYYSSQTLPAVKILPDETDLIIINPDKSGF LKYARIIRNMAIRPATKIIVLADEATFSVFQTVCGKSMQLLDQDASLDRLLHAVTRITQN KKQNHIKALYNKITANEFNVMMMLARGWSLAQIAGASQKSEKTIGAYKSNIAKKLGKNNT RLKYTISHYSQP >gi|283548478|gb|GG730299.1| GENE 2118 2300068 - 2309406 10116 3112 aa, chain + ## HITS:1 COG:BMEII0148 KEGG:ns NR:ns ## COG: BMEII0148 COG3468 # Protein_GI_number: 17988492 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Brucella melitensis # 1843 2629 544 1351 2554 296 37.0 7e-79 MNKVYSIIWNAALGIWVVVSELTKGKKKSSSRKTVAVLAAGALSGASMLASAAPIIDIGD HNISTDYQRGISAGVYDGIHNYGFLYEDNTTGQALNISGAIPAITPGQSGVVESTTIREL LQTGKITLKATSPDQSVKTISTEEELAEYLTHTQSAKPSQSADFDIVDPALPGEPETIKV FDTSTLAGFITESQIGDSVLNTYDAQQTQIYKQFGIALATNGATANLNIGDDTLHVRHQA NTIELLAKDSSLLEAQGANSQVNWQSDNYIKFNAAPVIPTKTFNGSKITSVFGGDVTLMT YGYNDAGEVIETGEKTFSITTAAELAEFNSWLLGESDDAAQKPDGQKVSQIQLWLDVENS QITTVSAAQAKYAELIDDLLTSGKQSDVISWDYDVWTDGESHSNNTTAERGELHAIYANG TGTAGTLNKDAIIAVDGSINGVMKALDGGVITNLGELNALRTTTGQSLAIGMLAKDATAT NHGTINSGLFIDKDGNQNVSSYGAFGMQGQGASVITNEGTINQAITTDNFGTASAADPWS KDDPETSLTLAIGMQLSNDAQGTNNGDINIVNGHKDKNPFGSGTAFGVEVADNATFTNAQ NASIYLGRSANNLSQDAILPGGASPSAGIMTKSAKEVINNGLITLGAGIRNAAGILIGNA TGDVLNTGTIVINGDSRGGTSKNYGITVRDSGAENGQIIRNDGKINVNGNNNVGIHVSAN KKNAEVTTSDSGSIVVDGNGGVGNRNYAIWAEGGANGQATVNVYSDIILNKAGNIGVHVR DNAIANVDTLSSPAFNNTDQIGYYLYGKGATANIGQAVMNDNAKDRTTIFRIANGALLAG NTTNPKDQSTSNLNLTLSGNKSVGVLATGAGSSVDTGEATFTVKGTDSAALVIEGGAKGT ISEKTTINLTGESTVAGVVDGQAHHLNGNTQGNAAATTLTSNARITSEASGNKVIAYVAR NLGNLLLDTQSIIDLASVDSIGVDVQKGGSLTNDSSSALHVSNGIGVRASGSNAQINKLG KIQVDDGTAGVLLTEGASLLINGSNGDSITTNGSADGIRLAEGAGALAAQSVLIRAEGTG AGIQNDANNTNITLRDVTIDSNDGPGIRTSVALTMNDGQNNLLNVNGKGTGFAFEQRNGD AVTGDLTIGKGYTIKVLSSEGSGIRANTDGRITTKADISVSNSAGGSAIIAKNVSALKNS GKIISASTTSPVIDASGDSSKTITNTGTLQAINDTVVAIQSGKGNDTIDISGGITSGVIN TGEGRDIFNWHSGAYAGEVNFSGTGGNNKANIGNVTLDKTRHIITAAGTGNALTFTDTKD AKIGSLASDNLNVGTNIGTGWDSLTISGSNADVRVVENLALASKTIAVNDGATLRTGDHV EPTSTAASIGDYNVTTQGTGSKVVFDTQGDASAAQIYRGIISGDGKFERAAGGTTIFTAN NSYTGSTTIAQTGTLQLGDGGNEGEVSAVSDIIDDGVLAINRANNVLLNGVISGIGALQQ IGGGITRLTGNNAYTGDTTVTNGTLLVNGDQSAARGATTVSGTSTLGGNGVIGGNVLMND ATTLSAGDGGAGTLTINGNLQLGSKTTSAFELGNAYTPGGALNDLVNVAGDLQLDGTLDV TTSQGGHFGPGVYRIYNYGGALNNQTLELGAVPDSQDKSNIFVQTSIDKQVNLVNANGVT LQFWDGETVNQSHGASGIEGNNKIDGGDGKWMAIGSLGDNNWTTATGEGNAPWAQKSFAV FTAAPGIVTVDNAAGDVHFSGAQFDADGYVVKGDALNAYATTENATHAGQTPGTGELLLR VGAGGAGQNYTATIESILREASTNDKLTLVKTDLGRLILSGDNEYRGGTRIDGGTLQISA DGNLGQSGTDLAINNGSTLQMGADLTSNRTIVLGANDNAAVFDLNSHHFTPTGEISGDGK LKVTSSSSDAGSVLSFDRANSYKGDTEIAGTGNINNVTVNVSKTGAFGSNESSTVNVNKG ATLNVSGTDTSLKSLTMNVADSLLTLADNVTAASAMLNLTGAAKAVLTHNATAGNATVNV AKDSTLALEEDSSGGNATVNNSGLMTFADQAMAENTVVKNLAGGKVDISAVDSATSIGSL SGAGNVELGNNALSLGNLHLDDTISGIISGNDGSLVKIGDGTLTLTGDNAYTGTTDVNEG VLLVNGNQSAATGQVTVKSGATLGGNGIIGGAVDVLDDGHITAGAAINSVGKLTTGSLTL SDNAQLDYQFGQAYTPGGAFNDLIDVNGDLTLDGKLNIETSPGGSFDVGVYRVINYTGTL TNNVMDIASAPEAADSLYVQTSVKNQVNLVNHAGLTLRFWDGTGGENGELKNNGVINGGD GIWQSSQGNDNWTTDESTPEGALNAPFTDAAFAVFQGEAGNVTVDNSKGDVIISGAQFAT DGYRVGGEAITTDTANTLIRVGDGTVEGASYTATIDSVIRGTGGLNKGDLGTLILTGDNT YSGGTTITSGTLQVAGDTNLGAPETGITFNGGTLKYGAAFDTARQVTLESGGGTFDTNGH DVSLLTEVEGNGHLTKTGKGSLTLTLDNTYTGGTTIEQGVLQLGNGGNIGSIQGDIIDNG VLNVNRADTLALTGNISGEGQLHQTGSGTTELLGANSYSGATLIANGVLQAGNTNTLSAA SHHYVVADTTLNTQGYNQTVAGLSNGGDVSLLGQQTGTTLTVKGDYRGEQGTINMAATQN ASGAGIADRLIIDGGNASGSTLLDIDGSGLGAPTVGDGIEVVTALNGATTTAQTSRDAFH LAADRMAAGAFEYQLHAGNAQGQGENWYLRSEYRPETMLYSGLASVVRQGDISLLGNMHQ RMGDEVKPGIDEDNRAWARMIGYSGKTKLDDAAGTQTSSHTMGIQVGVDMYANESWKAGM YTSILDIDSNVKGTKTGSNGKGGNIDDNAFYVGGYATWFSGDGMYVDNVLQYGNHKSRLA ATGNNGSYTVRGNTLTASTEVGKSFRLGASAWSLEPQAQLIYQYSDFDNGQLDGVTQTKV KMDTADSFTARLGVRLVADYGTNHGKFQPYGRVNVWQGLGSKDKTHFSNAVATTTLESSQ QYSSTEVAAGLSWSIDRNLQVYGELGTQFSNGGSKSQVEAPVNASIGFKKSF >gi|283548478|gb|GG730299.1| GENE 2119 2309550 - 2310317 746 255 aa, chain - ## HITS:1 COG:YPO0998_4 KEGG:ns NR:ns ## COG: YPO0998_4 COG2200 # Protein_GI_number: 16121300 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Yersinia pestis # 11 252 9 250 254 206 42.0 3e-53 MFNSDEVLIALEQALNTSQLYMVYQPIFDLRTQQISGFEALMRWNSPQMGMISPDIFITL LEDSGNIVSIEDMVARTPWDVATSWSDPLVLSVNISALEFCDPLLPQRVRNNLAVSGLAP HRCQIEVTETSPLRDSQVAAKNMTELKAIGVKLALDDFGTGHANLNYLLKYPFDTLKIDK EFVAGIEPDTRSTKIVEGIISLAHNFGIEVLAEGVETQSELDRLMQIGCDKIQGFFISPP VLAEEIPLLLTQYNR >gi|283548478|gb|GG730299.1| GENE 2120 2310417 - 2311004 242 195 aa, chain - ## HITS:1 COG:no KEGG:KPK_0838 NR:ns ## KEGG: KPK_0838 # Name: not_defined # Def: transcriptional regulator, LuxR family # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 184 4 188 194 103 30.0 4e-21 MLMCGSDNFVGNGMFAYLTSKHVPVQTFQFEDMLHQSSLCQHQTMIFNIINNEQPCSDVV QFLNKNRFKFYNNVVVIVADSLVAKLCVELLYVEKTIVLTEKSSLRDFAQLATLSIGKWN PRLYRSQKRLTEREQQILSLLVSGYTAKEISELVGLNYKTIQAHKMRVVTKLGLNNTSDL NKLIVRFTHRMSFLP >gi|283548478|gb|GG730299.1| GENE 2121 2311020 - 2311715 490 231 aa, chain - ## HITS:1 COG:no KEGG:CKO_02608 NR:ns ## KEGG: CKO_02608 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 231 1 231 231 282 70.0 8e-75 MSFGLAKDNKFEIIAILREELHKKTKLEVLCENSSVITQLEKVDFERFVISGHEDIVPEK VQYFILHSESGIVKFSARFEQNPSAGAEAGLSYLIPDMIFFAQQRQNQRFSFLKGYDFFC FGRYKNGENYSFKIKNISQGGCALIVKDVNARFVYKDAVIKNASLEFDTFGSLRLDLKVI DVVTINEFDEDNQLYSCHQISCEFDFKNRREEAEVEKIIIKFLMSNKIKSL >gi|283548478|gb|GG730299.1| GENE 2122 2312437 - 2315580 3851 1047 aa, chain - ## HITS:1 COG:ybdE KEGG:ns NR:ns ## COG: ybdE COG3696 # Protein_GI_number: 16128558 # Func_class: P Inorganic ion transport and metabolism # Function: Putative silver efflux pump # Organism: Escherichia coli K12 # 1 1047 1 1047 1047 1897 91.0 0 MIEWIIRRSVANRFLVMMGALFLSVWGTWTIINTPVDALPDLSDVQVIVKTSYPGQAPQI VENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGK LPAGVSAEMGPDATGVGWIFEYALVDRSGKHDLAELRSLQDWFLKYELKTIPNVAEVASV GGVVKQYQVVVDPMKLTQYGISLADVKSALDTSNQEAGGSSVEMAEAEYMVRASGYLQTL DDFNNIVLKTGADGVPVYLRDVARVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREV ISAVKAKLDTLKSSLPEGVEVVTTYDRSQLIDRAIDNLSYKLLEEFIVVALVCALFLWHL RSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEE WGHQHPDEKLDNATRWKVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAF TKTYAMAGAAFLAIVVIPILMGFWIRGKIPAESSNPLNRFLIRIYHPLLLKVLHWPKTTL LVAVLSILTVIYPLNKVGGEFLPQINEGDLLYMPSTLPGISAAQAADMLQKTDKLIMTVP EVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQWRPGMTMDKIIAELDKTVRLPGLAN LWVPPIRNRIDMLSTGIKSPIGIKVSGNVLADIDATAEQIEEVARTVPGVSSALAERLVG GRYLNVDINREKAARYGMTVGAVQLFVSSAVGGAMVGETVEGIARYPINLRYAQSYRDSP EALRNLPILTPMKQQITLGDVADVTVVSGPSMLKTEDARPTSWIYIDARDRDMVSVVNDL KKAIAENVRLKPGTSVAFSGQFELLERASHKLKLMVPMTLMIIFVLLYLAFRRFGEALLI ITSVPFALVGGIWFLYWMGFHMSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAEPALEN PQTFTADKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGM ITAPLLSLFIIPAAYKLMWLHRHRNQK >gi|283548478|gb|GG730299.1| GENE 2123 2315592 - 2316884 1137 430 aa, chain - ## HITS:1 COG:ECs0612 KEGG:ns NR:ns ## COG: ECs0612 COG0845 # Protein_GI_number: 15829866 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 6 414 1 403 407 630 77.0 1e-180 MASLNIKNTALILSGMIVGGIISVGIYSHYSSAKVTAETGQASQKEARKVLFWYDPMYPN TRFDKPGKSPFMDMDLIPKYADEETASASAPGVRIDPTQTQNLGLKTEPVRRGPLHYAQT FPANVSYNEYQFVIVQARSAGFIEKVYPLTVGDKIKKGSPLIDLTIPDWVEAQSEYLLLR ETGGSATQVEGILERLRLAGMPETDIQRLKSTRKIQTRFTLKAPIDGVITAFDLRTGMNI SKDNVVAKIQGMDPVWVSASVPESIAWLIKDASQFTITVPAWPDKTFTISKWSILPSVDA TTRTLQLRLQVDNADEALKPGMNAYLQLKTQSEPMLLIPSKALIDTGTEQRVITVDSEGR FVPKQVAVFHESQGLTAIRSGLTEGEKVVSSGLFLIDSEANISGALDRMRAQNGGAQDAA ATPAQAAHSY >gi|283548478|gb|GG730299.1| GENE 2124 2316961 - 2317308 390 115 aa, chain - ## HITS:1 COG:ylcC KEGG:ns NR:ns ## COG: ylcC COG5569 # Protein_GI_number: 16128556 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 115 1 110 110 129 61.0 1e-30 MKTTAKAVLFSLFSVVMFNAQANEHQHGEMMNMQPAAQQENVISATGVIEAVDMESKKIT IKHDPIPAVNWPAMTMRFTLVADTKADDIKPGDKVAFTFVQQGNLSVLRDIHTSK >gi|283548478|gb|GG730299.1| GENE 2125 2317341 - 2318723 480 460 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 3 458 2 456 460 189 28 5e-46 MSKFKLLTLSAVFVLAGCSLAPDYQRPALPVPQQFSLSQNALVSAPVGYQDTGWRTFFVD PQVKALIGEALANNRDLRMAVLKVQEARAQYGVTDADRYPQITAGSSGTYSGKLKGDSST DREFEAGLNLSFDLDFFGRLKNMSEADRQNFFASEEARRAVHISLISNVSQSYFNQRLAY AQLQIAEETLQNYQRSYAFVEKQLVTGSTNVLALEQARGVIESTRSEIAKRKGELAQANN ALQLLLGTYGKLPDDRARSDGDIKPVTLPPSLPSQILLQRPDILEAEHGLMAANANIGAA RAAFFPSITLTSSASSSSSDLSNLFNAASGMWNFVPKIDIPIFNAGRNQSNLDLAEIRQQ QSVVNYEQKIQSAFKEVADALDLRQSIADQISGQQRYLTSLQITLQRARALYQNGAVSYI EVLDAERSLFATQQSLLDLNYSQQVNEIKLFAALGGGWVE >gi|283548478|gb|GG730299.1| GENE 2126 2318918 - 2319601 835 227 aa, chain + ## HITS:1 COG:ECs0609 KEGG:ns NR:ns ## COG: ECs0609 COG0745 # Protein_GI_number: 15829863 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 227 1 227 227 424 96.0 1e-119 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW DMNFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEVPDGQ >gi|283548478|gb|GG730299.1| GENE 2127 2319591 - 2321042 983 483 aa, chain + ## HITS:1 COG:ybcZ KEGG:ns NR:ns ## COG: ybcZ COG0642 # Protein_GI_number: 16128553 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 479 1 479 480 744 77.0 0 MVSKRWRRPFSLATRLTFFISLATIASFFAFAWIMIHSVKVHFAEQDINDLQEISATLER ILNQPDETESRRLETLKNVVAGYSNVILSLEDSNQKAIFHSPGAPDLRQLIASARPDKNT HASDVFIISGPTLLTPKHTHGQKTSSKWRMIRLPVGQLADGKPAYTLYLALSIDFHLHYI NDLKNKLIMTASLISMMIVFIVLFAVYKGHEPIRNVSRRIQNITSKDLDVRLDPQAVPIE LEQLVSSFNHMIERIEDVFKRQSNFSADIAHEIRTPITNLVTQTEIALSQTRSPKELEDV LYSNLEEFGRMSKMVSDMLFLAQADNNQLIPEKTALNLADEVGKVFDFFEAWAEEREIGL RFEGRECWVSGDPLMLRRAMSNLLSNAMRYTPKGESVTVRVTEADELVQIVVENPGPPIP PQHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVIAHQGKVAVTSDSHATRFTLTLPR HAI >gi|283548478|gb|GG730299.1| GENE 2128 2321163 - 2321372 225 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085733|ref|ZP_06353892.2| ## NR: gi|291085733|ref|ZP_06353892.2| putative copper-binding protein PcoE [Citrobacter youngae ATCC 29220] putative copper-binding protein PcoE [Citrobacter youngae ATCC 29220] # 1 69 2 70 70 76 100.0 6e-13 MNKMSSFLAIAFFISAGVNAAETSSHAQSFSQMNEHEKAMVVHQSTNNGHSYAHEQQAEK HRAQANSAQ >gi|283548478|gb|GG730299.1| GENE 2129 2321456 - 2322259 499 267 aa, chain + ## HITS:1 COG:STM2950 KEGG:ns NR:ns ## COG: STM2950 COG1237 # Protein_GI_number: 16766256 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily II # Organism: Salmonella typhimurium LT2 # 1 263 1 263 265 397 68.0 1e-110 MALTLTVLLENRRAAGANKSLRAKPGLSLLVQDETTTILFDTGPDNSFILNAAQMGIDLT QLTAVVLSHGHYDHCGGVPWLADNSRIICHPQIACERYAAITLAGTPRRIKKLSCDNDYS RLNVEYTREPVAISDRFLWSGEINVPTPRAYGVIRGKTPQPDYISDEGVLIYKSERGLVI ITGCGHRGIENIVRHCQNITGIRHIHALIGGFHLRAASPAKLWRTRQFIKQQRPEKLLGC HCTGSWGRLWLPGTEAPATGDVIVLAD >gi|283548478|gb|GG730299.1| GENE 2130 2322446 - 2322874 598 142 aa, chain + ## HITS:1 COG:STM1652 KEGG:ns NR:ns ## COG: STM1652 COG0589 # Protein_GI_number: 16764996 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Salmonella typhimurium LT2 # 1 142 1 144 144 161 59.0 3e-40 MYRSILVPIDISEADLTRHVVPQVQAHAKTAKVHFLAVIPTVPFYASLGLAYSSEFPDRS GLQAKASEKLEEIVKQFNIPAGRSQTHVVYGPPKDQILKLAEAVDAELIIIASHKPGFST YLLGSTASAVVRHAKCPVLVVR >gi|283548478|gb|GG730299.1| GENE 2131 2323223 - 2323456 118 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085735|ref|ZP_06353895.2| ## NR: gi|291085735|ref|ZP_06353895.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 3 77 1 75 75 127 100.0 3e-28 MAMLNIEEFLNRWKGGRGMLSKIINILNTCILKSGAMRAELLPGDFLDTLERAEKINIRI LRQQLKQKALTQQVLTV >gi|283548478|gb|GG730299.1| GENE 2132 2323440 - 2324033 335 197 aa, chain + ## HITS:1 COG:STM0552 KEGG:ns NR:ns ## COG: STM0552 COG2771 # Protein_GI_number: 16763932 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 195 1 195 198 275 69.0 4e-74 MLSIAIKEENSHFEHGLKIIISHLANQWHQEIRFLPVEEIDRADIAFISLDEDWPSAECY QVPVHTRRQHRVVICNRNDKDKLMFRPCLYMLPLIYREDDVDEITKKLVLILQKRALRNS VPATICHFCTTRNFSVAERQFLMFLASGYTLAETARLLSVSDLHAKATRRSIMKKLHVKN DQQFLRYIRAHLSFLQN >gi|283548478|gb|GG730299.1| GENE 2133 2324420 - 2325142 257 240 aa, chain + ## HITS:1 COG:no KEGG:CKO_02621 NR:ns ## KEGG: CKO_02621 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 240 1 240 240 231 54.0 3e-59 MHSAKRRERHRRIRNANCTHQYPYCTSQVFDQLEYLTQKIEYTIPGDTISQAIITTDYYL AYALSRHLFSGTRTAIFQSIESALCSLQEPVISQLVVDMAGLTLSYFDILQCLRQLIKQR NDIQIFILLSRHDEDLKTFISLSGPFYILSRSLRLPEMRQALLSPVVNYIHSRRINQIDW EMIALLLQGETLKKIALLQTQPYHRIIYRLNQLITRLGLPNRQRFLHLIHRLKVTYHHLI >gi|283548478|gb|GG730299.1| GENE 2134 2325728 - 2326360 452 210 aa, chain + ## HITS:1 COG:STM0549 KEGG:ns NR:ns ## COG: STM0549 COG2197 # Protein_GI_number: 16763929 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 210 1 210 210 355 89.0 2e-98 MKPASVIIMDEHPIVRMSIEVLLEKNSNIQVVLKTDDSRAAIEHLRTYPVDLVILDIELP GSDGFTLLKRIKSLQEKTRVLFLSSKSESFYAGRAIRAGANGFVSKRKDLNDIYNAVKMI LSGYSFFPSDTLNFINNINAQKGVLNDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKT ISAHKANIYSKLGLHTIVELIDYAKMHELM >gi|283548478|gb|GG730299.1| GENE 2135 2326410 - 2326946 387 178 aa, chain - ## HITS:1 COG:STM0548 KEGG:ns NR:ns ## COG: STM0548 COG3539 # Protein_GI_number: 16763928 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 21 178 15 172 172 245 79.0 3e-65 MTNKQTPAAWALLAIVPMLTFSALCQAASSLGEINIELRGNVVDFTCAAIASDSNKTVDL GTWPTKQLQTSGDTTQPVSFTLKLEGCPPGSASITFSGTPAPGTTLLALDNSVMAQKVAI ELRDSDRTRLPLEQASQAVSIDENGNATLTFFANYIALADGVQPGVARADATFMINYN >gi|283548478|gb|GG730299.1| GENE 2136 2326939 - 2327946 761 335 aa, chain - ## HITS:1 COG:STM0547 KEGG:ns NR:ns ## COG: STM0547 COG3539 # Protein_GI_number: 16763927 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 335 1 335 335 555 83.0 1e-158 MKRQTGLLLASALLLMAQSSWATVCQNSNGTPTDVFYDLSNVFNSSNNQPGQVVTLPEKS GWIGVNATCPAGTWVDYTYRSYVTDLPVQSTEGGFQYLKLNDYLLGAMSITDSYAGLFYP PRNYIRMGVDGNVSKQKPFGVQDSNLVFKLKVIRSFINMVPIPRQTMFRVYVTTTTGDAL STPVYTISYSGKVEVPQNCEVNAGQIVEFDFGDIGASLFSQAGAGNRPEGINPQTKTVAI KCTNVAAQAYLTMRVEAEKASGQMMVSNNPDLGFIVADSRGNPLTPNNLSSNIPFQLDDN AAASVGIRAWPVSVTGNKPTEGPFTARGYLRVDYD >gi|283548478|gb|GG730299.1| GENE 2137 2327951 - 2330572 2354 873 aa, chain - ## HITS:1 COG:STM0546 KEGG:ns NR:ns ## COG: STM0546 COG3188 # Protein_GI_number: 16763926 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 1 870 1 870 870 1459 83.0 0 MNKTTYFPDLLPGVTPPLAGVALSTLAALFPSLSHGESYFNPAFLSADTATVADLSRFEK GNHQPEGVYRVDIWRNDEFVATQDIHFASSAGKAGEKSGGLMPCFGLDWVKRLGVNIAAF PALSKDPNATCINLPEAIPGSEIAFDFSTLRLNISLPQASMLNSARGYIPPDEWDEGIPA ALINYNFTGSRGSDTDSYFLSMLSGLNYGPWRLRNNGAWSYSKGDGYRSQSWKNIGTWLQ RAVIPLKGELVMGDSNTGNDVFDSVGFRGARLYSSDSMYPDSLQGYAPTVRGIARTAAKL TIRQNGYVIYQSYVSPGAFSITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE GRFKYDVVAGDFRSGNSQQSSPFFFQGTLIAGLPEGYTAYGGTQLASRYAAVVLGTGRNL GDWGAVSVDLTHARSQLADDSTHQGQSLRFLYAKSLNNFGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYEYEYDSEGNRHDVPDVKSYHNLSYSKKGRFQVNISQNLGDYGSLYISGSQQ TYWNTSDTNTWYQLGYASGWQGISYSLSWSWSESVGIADTDRILAFNMSVPFSLLSGRRY SRDNVLDRTYATFNANRNSDGQNSWQSGIGGTLLDGRNLSYSVNQGHSSTNGYSGNASAN WQAAYGTLGVGYNYDRDQHDYNWQLAGGVIGHEDGITLSQPLGDTNVLIKAPGAQGVRIE NQTGVQTDWRGYAVMPYATVYRYNRVALDTNSMNNNTDVENNVSSVVPTQGALVRATFDT RIGVRALMTAKYAGKPVPFGSVVRENTSGVTSMVGEDGQIYLSGLPLKGELLIQWGEGAN ARCVAHYALPEVSLKQAVTLTNVTCESPAARQE >gi|283548478|gb|GG730299.1| GENE 2138 2330580 - 2331272 636 230 aa, chain - ## HITS:1 COG:STM0545 KEGG:ns NR:ns ## COG: STM0545 COG3121 # Protein_GI_number: 16763925 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Salmonella typhimurium LT2 # 1 229 1 229 230 345 78.0 3e-95 MFNHLKSGFILLLALFSAASAQAAGGIALGATRVIYPADAKQTSLSISNSDTKERYLVNS WIENSAGAKEKSFVVTPPLFVSEAKSENTLRIIYAGAPLPKDRESLFWMNVKAIPSVNKN SLEGKNVLQLAILSRIKLFVRPNNLAQIPEDAPGMLQFSRSGNHLKINNPSAYYVTLVNL NVGKTKIDNVMVAPKSDTQVLLPTGVQGNVTFQTVNDYGAVTTAQTVSVR >gi|283548478|gb|GG730299.1| GENE 2139 2331314 - 2331856 222 180 aa, chain - ## HITS:1 COG:STM0544 KEGG:ns NR:ns ## COG: STM0544 COG3539 # Protein_GI_number: 16763924 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 4 180 1 177 177 267 72.0 6e-72 MRQMIGKGVALAGMLCVMPALANTVILESGRLHLRGQLVNGACTVATDSQNLRVQMGQYR SNAFSGTGSFATTSVPFSLRLTSCSSDVYDHVGIAFAGVTPAEDPQVFLASGDASAASGI GLALFDERQRQIIPNALPLHYAPIITQEMTFHFTARYRAVSENITPGILRSDVWFTLVYP >gi|283548478|gb|GG730299.1| GENE 2140 2331925 - 2332494 609 189 aa, chain - ## HITS:1 COG:STM0543 KEGG:ns NR:ns ## COG: STM0543 COG3539 # Protein_GI_number: 16763923 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 189 1 185 185 221 82.0 7e-58 MKHKLIASSVIASLMLVAGAAVAAEPAATDPVSVSGGTVHFEGELVNAACAVSTQSSDQV VTLGQYRTASFTAVGDTTAQIPFTIVLNDCDPKVAATAAVAFSGQTDITNNNLLAVSSSD NSTTAGGVGIEILDNTSTALKPDGATFSTAQALVEGTNTLRFSARYKATATSATPGQANA DATFIMKYE >gi|283548478|gb|GG730299.1| GENE 2141 2333069 - 2333935 919 288 aa, chain + ## HITS:1 COG:STM0542 KEGG:ns NR:ns ## COG: STM0542 COG0190 # Protein_GI_number: 16763922 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Salmonella typhimurium LT2 # 1 284 1 284 288 541 97.0 1e-154 MAAKIIDGKTIAQQVRSEVAQKVQARLAAALRAPGLAVVLVGSNPASQIYVASKRKACDE VGFVSRSYDLPETTSEAELLELIDTLNADTTIDGILVQLPLPAGIDNVKVLERIAPDKDV DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELL LAGCTTTVTHRFTKDLRRHVEHADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLENGKV VGDVVFEDAAARASYITPVPGGVGPMTVATLIENTLQACVEYHDVKDV >gi|283548478|gb|GG730299.1| GENE 2142 2333937 - 2334149 314 70 aa, chain + ## HITS:1 COG:STM0541 KEGG:ns NR:ns ## COG: STM0541 COG2501 # Protein_GI_number: 16763921 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 70 1 70 70 124 91.0 4e-29 MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIGEGLVKVDGVVETRKRCKIVAGQTVS FEGHSINIVA >gi|283548478|gb|GG730299.1| GENE 2143 2334048 - 2334293 106 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNDSRHDVRFEWKNNMLTVHCEVVMKSFSENEGAVAGQGVNLIRPRGSCDDVNAVTFKA DGLTGNDFAAFTRFNNAVDLH >gi|283548478|gb|GG730299.1| GENE 2144 2334273 - 2334797 565 174 aa, chain + ## HITS:1 COG:ybcI KEGG:ns NR:ns ## COG: ybcI COG1988 # Protein_GI_number: 16128511 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 173 1 173 173 263 87.0 9e-71 MPTIVTHAAVPLCLGLGLGLSVIPPRLLFTGVVLAMLPDADVLSFKLGVAYGNVFGHRGF THSLLFAFVVPLLCVLIGRRWFKAGLIRCWLFLTVSLLSHSLLDSITTGGKGVGWLWPWS DERFFAPWQVIKVAPFALSRYATPYGHQVIISELLWVWLPGMVMVGVLRWYRKY >gi|283548478|gb|GG730299.1| GENE 2145 2334891 - 2336276 1832 461 aa, chain - ## HITS:1 COG:ECs0588 KEGG:ns NR:ns ## COG: ECs0588 COG0215 # Protein_GI_number: 15829842 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 461 1 461 461 900 96.0 0 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYK LKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHSDFDALNILRPDLEPRATHHIAE IIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGQLSRQDLDQLQAGARVDVVDVKRNPMD FVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIA QSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETIRYFLMSGHYRS QLNYSEENLKQARSALERLYTALRGTDKSVAPAGGEAFEARFIEAMDDDFNTPEAYSVLF DMAREVNRLKGEDMAAANGMASHLRKLSSVLGLLEQEPEAFLQSGAQADDGEVAEIEALI QQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK >gi|283548478|gb|GG730299.1| GENE 2146 2336480 - 2336947 311 155 aa, chain + ## HITS:1 COG:no KEGG:YPDSF_1194 NR:ns ## KEGG: YPDSF_1194 # Name: not_defined # Def: lipoprotein # Organism: Y.pestis_Pestoides # Pathway: not_defined # 19 153 23 156 157 139 47.0 3e-32 MSAIPSRVARCVIFTLPFLLSGCIYHDYPAPQVEGTLTHAGEPLAGVAVSLTEFDRQIAT VQTDSNGHFLLVPQGDWQVFIPIGPQDRLSRWTLTTTDHQGQELNIYTDGRFGGAFSGYS GNDRVKLSCELSPAETKNNQQESNPLCEPIPDSAP >gi|283548478|gb|GG730299.1| GENE 2147 2337067 - 2337561 590 164 aa, chain + ## HITS:1 COG:STM0536 KEGG:ns NR:ns ## COG: STM0536 COG0652 # Protein_GI_number: 16763916 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Salmonella typhimurium LT2 # 1 164 1 164 164 322 98.0 2e-88 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMK QKATKEAIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVADNDFLNFSGESMQGWGY CVFAEVVEGMDVVDKIKGVSTGRSGMHQDVPKEDVIIENVTVSE >gi|283548478|gb|GG730299.1| GENE 2148 2337564 - 2338286 594 240 aa, chain + ## HITS:1 COG:ybbF KEGG:ns NR:ns ## COG: ybbF COG2908 # Protein_GI_number: 16128508 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 240 1 240 240 450 89.0 1e-127 MATLFIADLHLCTEEPAITAGFLRFLAGDARKADALYILGDLFEAWIGDDDPNPLHHEIA AAIKALADSGVPCFFIHGNRDFLLGKRFARESGMTLLPEEKVLDLYGRKVLIMHGDTLCT DDAGYQAFRAKVHQPWLQKLFLALPLFIRQRIAAKMRADSKAANSSKSLAIMDVNQQAVI SELEKHQVQWLIHGHTHRPAVHELTANGQPAFRVVLGAWHTEGSMIKVTPDDVELIAFPF >gi|283548478|gb|GG730299.1| GENE 2149 2338405 - 2338914 574 169 aa, chain + ## HITS:1 COG:ECs0585 KEGG:ns NR:ns ## COG: ECs0585 COG0041 # Protein_GI_number: 15829839 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Escherichia coli O157:H7 # 1 169 1 169 169 269 97.0 2e-72 MSSRNNPARVAIVMGSKSDWATMQFAAEIFEMLDVPHHVEVVSAHRTPDKLFSFAEGAEE NGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLA IGKAGAANAALLAAQILATHDKALHQRLNAWRKAQTDEVLENPDPRGAA >gi|283548478|gb|GG730299.1| GENE 2150 2338911 - 2339978 1420 355 aa, chain + ## HITS:1 COG:STM0533 KEGG:ns NR:ns ## COG: STM0533 COG0026 # Protein_GI_number: 16763913 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Salmonella typhimurium LT2 # 1 355 1 355 355 667 90.0 0 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTR ELARHPAFVNRDVFPIIADRLTQKQLFDKLGLATAPWQLLADKSEWPAVFNKLGELAIVK RRVGGYDGRGQWRLRANETEQLPDDCYGECIVERGINFSGEVSLVGARAHDGSTVFYPLT HNLHQDGILRTSVVFPQANARQQAQAEAMLSAIMLELGYVGVMAMECFITPEGLLINELA PRVHNSGHWTQNGASISQFELHLRAITGLPLPTPVVNNPSVMVNLIGSDLNYDWLKLPLV HLHWYDKEVREGRKVGHLNLSDSDTARLSATLEALIPLLPPEYASGIIWAQSKLK >gi|283548478|gb|GG730299.1| GENE 2151 2340075 - 2341160 1056 361 aa, chain + ## HITS:1 COG:STM0513 KEGG:ns NR:ns ## COG: STM0513 COG2603 # Protein_GI_number: 16763893 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Salmonella typhimurium LT2 # 6 361 9 364 364 592 80.0 1e-169 MNDGTDYRAILLADTPIIDVRAPVEFQQGAMPGAVNLPLMNDDERAAVGTCYKRQGPEAA LELGHQLVSGETRQQRMKAWQDACRQHPKGYLCCARGGQRSHIVQQWLHESGIDYPLIKG GYKALRQAVIQLTEELVQKPIVLIGGCTGNGKTQLVQQQPNGVDLEGLAHHRGSSFGRTV EPQLSQASFENLLAVNMLKIDSRQDLRQWVLEDEGRMIGANHLPECLRERMTEASIAVVD DPFELRLERLREEYFVRMHHDFTHAYGENQGWQEYSEYLHHGLFAIRRRLGLQRFAELTA LLDVALDEQQATGSTDAHMGWLVPLLNEYYDPMYRYQLEKKAAKIVFRGTWQDVAGWLNA Q >gi|283548478|gb|GG730299.1| GENE 2152 2341161 - 2341820 941 219 aa, chain - ## HITS:1 COG:STM0512 KEGG:ns NR:ns ## COG: STM0512 COG2011 # Protein_GI_number: 16763892 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 218 1 218 219 306 94.0 2e-83 MDDLLPDLTLAFNETFQMLSISTVLAIIGGLPLGFLIFVTDRHLFWQNRFVYLLSSVLVN IIRSVPFVILLVLLLPLTQFLLGNTIGPIAASVPLSVAAIAFYARLVDSALREVDKGIIE AAEAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYSAMAGIVGGGGVGDLAIRFGY YRYETQVMIVTVVALIILVQVVQVLGDWLAKRADKRDRR >gi|283548478|gb|GG730299.1| GENE 2153 2341813 - 2342829 1062 338 aa, chain - ## HITS:1 COG:STM0511 KEGG:ns NR:ns ## COG: STM0511 COG1135 # Protein_GI_number: 16763891 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 338 1 338 338 597 92.0 1e-170 MIEIDKVCVDFTAGRGPSTRAVDDVSLRIGAGEIFGIVGTSGAGKSTLLRTLNALTRPSQ GCVKVNGVEISALEGAHLRKARQRIGMIFQHFNLMHTRTVAQNVAFSLKAAGWERSKIGP RVSEILALVGLSDKANRFPVQLSGGQKQRVGIARAIANHPDVLLCDEPTSALDLETSATI LALLKQINQQLGITIVLITHEMNVIKSICDRVAVMSGGKVVETGEVFDVFAHPQHPFTQQ LVSHTLNLTLPERLRQHLPGQLLKILFIGDSAEQPVLSEVAVKFGVAVNILHGKIEYIGE RALGILVVQLTAPHNPSAVDVAVEHIRQRTAQVEVIRG >gi|283548478|gb|GG730299.1| GENE 2154 2342891 - 2343721 1137 276 aa, chain - ## HITS:1 COG:STM0510 KEGG:ns NR:ns ## COG: STM0510 COG1464 # Protein_GI_number: 16763890 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Salmonella typhimurium LT2 # 1 274 1 274 276 506 94.0 1e-143 MGLRQSLRVATGALLLACGLQFAHANSDPHTIVFGVAPGPYGDMVKQAIAPTLKEKGYKV VVREFSDYVQPNMALSNGSIDANLFQHSLYFDKFTADKGLKLSKLIVVPTAGMGFYSRKI KSLDELKKGDVITLSNDPTNLARGLRFLQSIGLITIKDNIDPTKASERDIASNPKGLVFK PLEAAQLPRTLDGVTGALVNGNFAVAAKLDLSSAIKQEHLDENLKNIIAVRSEDADKPFA KDIVEAVKSPAYRAVIDDPQNIYSAFQKPEWMSAAQ >gi|283548478|gb|GG730299.1| GENE 2155 2343992 - 2345080 1342 362 aa, chain - ## HITS:1 COG:STM0509 KEGG:ns NR:ns ## COG: STM0509 COG3203 # Protein_GI_number: 16763889 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Salmonella typhimurium LT2 # 1 362 16 377 377 620 89.0 1e-177 MALTTFASQAEITVLKQDPQAGNPLSRLNFTVGGSIRPQFQNMAGDDGKNGYKRNGFDGG TRFRFAADYYLFDDISWVSYYELGVNFPAMFNWDNHYADGANDTTRRMLYTGLKSATWGT LTFGQQNSIYYDVVGAKTDIWDYDMIGQAPGNGINGDYDGSYRTRKSLKYKKTVGDVDLY ASYLFSDDYNPNNGLRYKRKGGGSLGVDYRITDDLTWGTAWNYTRAEMRGDGSKTYDQNI VGTALSWKPDNWTFSMGGGWYQNFMTTKKVSVNDYFAGDAWGLEYFAGYTFPVGQYALKS VQPYFMGDRIEYVNGRNYLRTDNGVGISFQLDYGFRVDYEHVFTSSTDNLGDMNLVRLRY DF >gi|283548478|gb|GG730299.1| GENE 2156 2345313 - 2347727 2707 804 aa, chain - ## HITS:1 COG:ybbP KEGG:ns NR:ns ## COG: ybbP COG3127 # Protein_GI_number: 16128480 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component # Organism: Escherichia coli K12 # 1 802 1 802 804 1295 89.0 0 MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALQSS RTVPKAWIDEARQRGLKVGEQLTFATMTFARDTPQLANVKAVDDVYPMYGTLQTNPPGLK PQPGSVLLAPRLMALLNLKIGDSIDVGDATLRIAGEVVQEPDAGFNPFQIAPRLMMSMAD VEKTAAVQPGSRVTWRYKFGGTPQQLDAYEKWLLPQLKPEQRWYGLEQDDGALGKSLERS QQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAILKTLGAGRAQLRRLIVGQWLMVLA LSGVTGGLFGLLFERVLVVLLRPVLPGELPPASPWPWLWALGTMTVISLLVGLRPYRLLL ATQPLRVLRRDVVANVWPLKFYLPVVTIVVVALLAGLMGGSLLLWAVLAGAVVLALVCGV LGWMLLNVLRGLTLTSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR WQQQMPPESPNYFLINIASEQVVPLKAFLSEHQVIPESFYPIVRARLTAINEKPTEGNQD EALNRELNLTWQDARPDHNPITAGSWPPKAGEVSMEEGLAKRLNVKLGDRVTFMGDTQDF SATVSSLRKVDWESLRPNFFFIFPSGALDDQPQSWLTSFRWENGNGMLTQLNREFPTISL LDIGAILKQVSQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAG KKLLRTTLWCEFAMLGMVAGLVAAIGAETALAVLQTRVFDFPWEPDWRLWVVLPLCGALL LSLCGGWLGSRLLKGKALFRQFNS >gi|283548478|gb|GG730299.1| GENE 2157 2347724 - 2348410 321 228 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 25 228 20 223 223 128 37 1e-27 MPAENIVEVHRLKKSVGQGDHELSILTGVELVVKRAETIALIGESGSGKSTLLAILAGLD DGTSGEVSLVGQALHAMDEEARAQLRARHVGFVFQSFMLIPTLNAQENVELPALLRGENS GKSRDGAKTLLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ TGDKIADLLFSLNREHGTTLILVTHDPQLAARCDRRLRLVNGQLQEEA >gi|283548478|gb|GG730299.1| GENE 2158 2348348 - 2349004 659 218 aa, chain + ## HITS:1 COG:tesA KEGG:ns NR:ns ## COG: tesA COG2755 # Protein_GI_number: 16128478 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Escherichia coli K12 # 12 218 2 208 208 385 94.0 1e-107 MITLTDGFLKTMNFNNVFRWHWPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSASAAWP ALLNNKWQTKTPVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFAPAQT EQTLRTILQNVKAANAEPLLMQIRLPANYGRRYNETFSAIYPKLAKEFDIPLLPLFMEEV YLKPQWMQDDGIHPNRDAQPFIADWMAKQLTPLVNHDS >gi|283548478|gb|GG730299.1| GENE 2159 2349033 - 2349803 226 256 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 1 255 3 249 259 91 30 1e-16 MQKSVLITGCSSGIGLESAFELKRQGFQILAGCRKPDDVVRMNSKGFTGVLLDLDSPESV DRAADEVIALTDNRLYGIFNNAGYGVYGPLPTISREQMEQQFSANFFGAHQLTMRLLPAM LPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIR TRFTENVNQTQSDAPVENPGIAARFTLGPEAVVAKVRHAFESDKPKLRYPVTLVTWAVML LKRLLPGRIMDKILQG >gi|283548478|gb|GG730299.1| GENE 2160 2349862 - 2350716 1286 284 aa, chain + ## HITS:1 COG:ECs0555 KEGG:ns NR:ns ## COG: ECs0555 COG3118 # Protein_GI_number: 15829809 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin domain-containing protein # Organism: Escherichia coli O157:H7 # 1 284 13 296 296 440 89.0 1e-123 MSTQNIVNINESNLQQTLEQSMTTPVLFYFWSERSQHCLQLTPVLENLAAQYNGQFILAK LDCDAEQMIASQFGLRAIPTVYLFQNGQPVDGFQGPQPEEVIRALLEKVLPSEEELKARQ AIEFIEAGNHAEALPLLKEAWQLSNQSSEIGLLLAETQIALNRSDDAEAVLKTIPLQDQD TRYQGLVAQIELLKQAADTPEIQQLQQQVASNPQDAALATQLALQLHQVGRNEESLELLF SHLKKDLTAADGQARKTFQEILAALGTGDALASKYRRQLYALLY >gi|283548478|gb|GG730299.1| GENE 2161 2350822 - 2351601 952 259 aa, chain - ## HITS:1 COG:STM0503 KEGG:ns NR:ns ## COG: STM0503 COG0390 # Protein_GI_number: 16763883 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 258 1 258 259 424 91.0 1e-119 MNEHNITNESLALAMMLVVVAILISNKEKLALEKDILWSVCRAVVQLIIVGYVLKYIFGV NHSILTLLMVLFICFNAAYNAQKRSKYIDNAFLSSFIAITAGAGLTLSVLVLSGSIEFTP MQVIPISGMIAGNAMVAVGLCYNNLGQRFNSEQQQIQEKLSLGATPKVASAPLIRDSIRA SLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT YRKFYNSRHQLVVTPLKKP >gi|283548478|gb|GG730299.1| GENE 2162 2351588 - 2352265 258 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 16 222 31 245 329 103 28 3e-20 MEESSILLQLKNVAWQAGATQILNNICFDLRAGEFKLITGQSGCGKSTLLKIVASLISPT AGEIRFEGKEINTLKPEAYRQQVSYCAQTPALFGDTVYDNLIFPWQIRDKSPEPDVFLED LARFQLPETILKKNINELSGGEKQRVSLIRNLQFLPKILLLDEITSALDEANKRNVNELI HHYVRDKNIAVLWVTHDKDEIDHADNVITLQPHAGEMQEVSNERA >gi|283548478|gb|GG730299.1| GENE 2163 2352400 - 2353317 1408 305 aa, chain + ## HITS:1 COG:STM0501 KEGG:ns NR:ns ## COG: STM0501 COG0330 # Protein_GI_number: 16763881 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Salmonella typhimurium LT2 # 1 305 1 305 305 518 94.0 1e-147 MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFMDRIGRKIN MMEQVLDIPSQEVISKDNANVAIDAVCFIQVIDAPKAAYEVSNLELAIINLTMTNIRTVL GSMELDEMLSQRDNINTRLLHIVDEATNPWGIKITRIEIRDVRPPAELIEAMNAQMKAER TKRAYILEAEGIRQAEIVKAEGEKQSKILIAEGERQSAFLQAEARERSAEAEARATQMVS EAIAAGDIQAVNYFVAQKYTEALQHIGSSNNSKVVMMPLDASSLMGSIAGIAELVKDSAS ERKKS >gi|283548478|gb|GG730299.1| GENE 2164 2353314 - 2353772 483 152 aa, chain + ## HITS:1 COG:ZybbJ KEGG:ns NR:ns ## COG: ZybbJ COG1585 # Protein_GI_number: 15800225 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Escherichia coli O157:H7 EDL933 # 1 150 1 150 152 207 82.0 8e-54 MIAMILVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLMVWLVPLDWAWQGTMF ALLTLLAAWLWWKWLAKRVQQQKPADSHLNQRGQQLVGRRFILETALVNGRGHMRVGDSS WPVSARDDLSAGTQVEVIAVEGITLIIKAISH >gi|283548478|gb|GG730299.1| GENE 2165 2353793 - 2355946 2317 717 aa, chain + ## HITS:1 COG:no KEGG:ETA_19300 NR:ns ## KEGG: ETA_19300 # Name: not_defined # Def: hypothetical protein # Organism: E.tasmaniensis # Pathway: not_defined # 3 717 4 718 718 627 47.0 1e-178 MFRKTSLAVALCSLLAGAPQAFASFDMEDCKWSDDSCLLKGTPTFNPENDSRDNLLRLLS QEKSFDLPVQSMPEDITRSRDFYFAYHPQWDQAAPQPAAASAQSEDTTLTQQLAALDIEP PSFANQNGYDNDLENRYVSNNRQSVSQFIAALMADATLNTDQRRLLAQARLDLWGRATKE QIAESLAALPADSTSLLYKTYLTGAAHFYDQNYEGAEHDFTIVLHNGSPWLMETAQYMLM RTALNKSSKYSDGQYGDFNIDNINRKDAAQAQKEAQNYLQRWPQGRYADSTRGMLRRINW YLQAWPQLAGLYEQTLQQAADAQQLRKIVIEYDNVYGMAFYEQSVLEAFPDAPRVSYIEL LRALRLNSDNKPTLTQAQLDASKPVFEQSQKLPLWRDLQLNLWLATGNYAAIIQAVAPAQ KLAPRDTLAFSEQVLYGEALMGQKNWAAARDFWQQLLTLSQDNEQRQYVQAKLAATLVYS GNVAAIFAPESAVTNLRFRSQVLKTQATPEQLRQQAVHGTNNEERTIALHTLLVRDLTEN RFGDWLNDKKLVSDITPPVIDEAFNDVNLSTFDWNGDAAQAGYTCRSLNETVTALNKKAD DAHALNCLGEFFRTTQTHVDLWKNSTGNDVLEAAISRKQPFGQFDRQSYYQQVITSPTAE VEDKSFALYRAIMCYAPSGSNECGGEDVDKLQRKGWFTQLKTQYPGSPWAQKLKYYW >gi|283548478|gb|GG730299.1| GENE 2166 2355916 - 2356632 665 238 aa, chain + ## HITS:1 COG:no KEGG:ETA_19310 NR:ns ## KEGG: ETA_19310 # Name: not_defined # Def: hypothetical protein # Organism: E.tasmaniensis # Pathway: not_defined # 1 234 1 238 240 308 67.0 9e-83 MGAKTQILLVTALLVGQVQATDVVTARDHPAFWLWSGVKASDELKNAQTVYLHQGEVLVR SGDVVFQRLGLPVSRLTFPSIWLTVRFTTLDVPEAIPARIIRLMQRWQSTGNHVVGLQVD FDAATHQLADYARFLQQLRQRLPAEFALGVTGLLDWAKTGDVATLNALAIDELVVQSYQG RHTVTNYQAYLPALSRLRIPFKLGLVQNGSRDPQAEAKLEKSPWYRGTVVFMLNPSRR >gi|283548478|gb|GG730299.1| GENE 2167 2356629 - 2357039 376 136 aa, chain - ## HITS:1 COG:STM0499 KEGG:ns NR:ns ## COG: STM0499 COG0789 # Protein_GI_number: 16763879 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 135 1 135 138 248 92.0 2e-66 MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYNQQHLNELTLLRQARQVGFNL EECGELVNLFNDPARHSADVKKRTLEKVADIERHISELQAMRLHLLALAESCPGDDSAEC PIMDNLSGCCHHKAKA >gi|283548478|gb|GG730299.1| GENE 2168 2357149 - 2359650 3087 833 aa, chain + ## HITS:1 COG:STM0498 KEGG:ns NR:ns ## COG: STM0498 COG2217 # Protein_GI_number: 16763878 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Salmonella typhimurium LT2 # 1 832 1 832 833 1415 93.0 0 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVTVTEAHVTGSASAQALIETIKQAG YGAELSHPKAKPLAESSIPSEALAAVPSELPAATADDDSQQLLLNGMSCASCVTRVQDAL QSVPGVTQARVNLAERTALVMGSASAEELVKAVEKAGYGAEAIEDDVKRRERQQETAVAT MKRFRWQAAVALLLGVPVMVWGMIGDNMMVSDDNRSLWLAIGLATLAVMVFAGGHFYRNA WKSLMNGTATMDTLVALGTGVAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHM LEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQAGMLLRLTTGDRVPVDGEI TQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQ AQSSKPEIGKLADRISSVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTVLIIACPC ALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTIVFDKTGTLTEGKPQVVAIKTF GTTDEALAIRLAAALEQGSSHPLARAILDKAGDVTLPQVNGFRTLRGLGVSGETEGHALL LGNQALLNEQQVDTTEMEAEITAQASQGSTPVLLAIDGKAAALLAVRDPLRGDSVAALQR LHRAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDG INDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALSISRATLRNMKQNLLGA FIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE >gi|283548478|gb|GG730299.1| GENE 2169 2359804 - 2360598 703 264 aa, chain + ## HITS:1 COG:ECs0535 KEGG:ns NR:ns ## COG: ECs0535 COG3735 # Protein_GI_number: 15829789 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 264 1 264 264 424 81.0 1e-119 MDLLYRVKNFFTALRGNRYTWPAIDISLPGNRHFHLIGSIHMGSRDMAPLPAKLLKKLNR ADALIVEADVSGDDAPFANLPSFAALEERISTAQLDNLHKVTSELGISPSLLSTQPLWQI AMVLQATQAQQLGLRAEYGIDYQLLKAAKQADKPVIELEGASSQIELLCQLPDNGLALLD DTLTHWHTNARLLQQMMGWWLKTPPRNSELTLPNTFSQSLYDVLMHQRNVAWRDRLRTLP AGHYVVAVGALHLYGEGNLPEMLR >gi|283548478|gb|GG730299.1| GENE 2170 2360800 - 2361279 569 159 aa, chain + ## HITS:1 COG:ybaK KEGG:ns NR:ns ## COG: ybaK COG2606 # Protein_GI_number: 16128465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 159 1 159 159 277 93.0 7e-75 MTPAVNLLEKNKISFQIHTYDHDPSETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLA VAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPA QTFDTIYVSGGKRGLDIELAASDLAKILDAKFADIARRD >gi|283548478|gb|GG730299.1| GENE 2171 2361460 - 2363112 1929 550 aa, chain - ## HITS:1 COG:ushA KEGG:ns NR:ns ## COG: ushA COG0737 # Protein_GI_number: 16128464 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Escherichia coli K12 # 1 550 1 550 550 1036 90.0 0 MTFLKRGVALALLAAFALAGQPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLAAQK TLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFD NPLTVLRQQEKWSKFPFLSANIYQKSTGERLFKPWAIFKRQDLKIAVLGLTTDDTAKIGN PEFFTDIEFRKPADEAKLVIQELNVTEKPDIIIAATHMGHYDNGNHGSNAPGDVEMARSL PAGSLAMIVGGHSQDPVCMASENKKQVDYVPGTPCAPDKQNGIWIVQAHEWGKYVGRADF EFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVLYTPEIAENQQMLSLLTPFQNKGKAQL DVKIGSVNARLEGDRSKVRFVQTNMGHLLLAAQMARTSADFGVMSGGGIRDSIEGGDITY KSVLKVQPFGNIVVYADMSGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKI KGEPVDPAKTYRMATLSFNATGGDGYPRIDNKPGYVNTGFIDAEVLKEYVQKNSPLDAGA YEPKGEVSWQ >gi|283548478|gb|GG730299.1| GENE 2172 2363287 - 2364507 1232 406 aa, chain + ## HITS:1 COG:ECs0532 KEGG:ns NR:ns ## COG: ECs0532 COG0477 # Protein_GI_number: 15829786 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 405 1 405 406 639 94.0 0 MAISEPTQPAAGASASVAKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQSEFSLTFM QIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLSGLVLLAMAGSFHMVLLAA ALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNV AWFVLAALLAIVVLAQISRWYAAQHRMSKRKPKVAIVNPLPRNKVVLAVSILLVLIFSKY FYMASISSYYTFYLMQKFGLSVQNAQLHLFAFLFAVAAGTVIGGPLGDKIGRKYVIWGSI LGVAPFTLVLPYATLEWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAF GMGGLGAAVLGLIADHTSIDLVYKICAFLPLLGILTIFLPDNRHKA >gi|283548478|gb|GG730299.1| GENE 2173 2364733 - 2366412 515 559 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 4 516 5 508 618 202 27 4e-50 MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPEL AELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVMGWSLMVGIVF GLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLMMVLTLVLLPAVAGMLEKEDV GFASLAVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAF GAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQ QPLAVLGTLAIIVFGKSVAAYFLVRLFGHSQRTALTIATSLAQIGEFAFILAGLGMALNL LPQAGQNLVLAGAILSIMLNPVLFAVLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHA LLIGFGRVGSLLGEKLMAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMNLAHLD CARWLLLTIPNGYEAGEIVASAREKCPSIEIIARAHYDDEVEYITERGANQVVMGEREIA RTMLELIETPPAGDVATAS >gi|283548478|gb|GG730299.1| GENE 2174 2366503 - 2367807 1498 434 aa, chain - ## HITS:1 COG:STM0491 KEGG:ns NR:ns ## COG: STM0491 COG0524 # Protein_GI_number: 16763871 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 1 434 1 434 434 871 94.0 0 MKFPGKRKSKHYFPVSARDPLLQQIQPENETSAAWVVGIDQTLVDIEAKVDDDFVKRYGL SAGHSLVIADDVAEALYQELMRENLITHQFAGGTIGNTMHNYSVLADDRSILLGVMCSNI EIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESGERTFAISPGHMNKLRADSIP EAVIAGASALVLTSYLVRCEPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIADNPQWW QAFLKEHVSILAMNEEEAEALTGENDPLLASDKALDWVDLVLCTAGPVGLYMAGFTEEEA KRKTQHPLLPGAIAEFNQYEFSRAMRHKDCTHPLRVYSHIAPYMGGPEKIMNTNGAGDGA LAALLHDITANSYHRSNVPNSSKHKYTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGL PEREDSLEESYWER >gi|283548478|gb|GG730299.1| GENE 2175 2367961 - 2368920 680 319 aa, chain + ## HITS:1 COG:STM0490 KEGG:ns NR:ns ## COG: STM0490 COG0657 # Protein_GI_number: 16763870 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Salmonella typhimurium LT2 # 1 319 1 319 323 527 77.0 1e-149 MKPENKIPVLDKISDEMKAVVNFHRDDLPPWPAVDDFVAQRKHYIHERQLWNADAPQMNT RECVISTTRGPVATRIYSPQSHSQATLYYLHGGGFILGNLDTHDRIMRLLALYTQCTVIG IDYSLSPEARFPQAIEEIVAVCQYFHQHAADYALNVNHIGFAGDSAGAMLALASALWLRD KQIACGKVAGILLWYGLYGLQDSPSRQLMGGAWDGLTREDLQMYENAYLSSADDRESPYY CLFNNDLTRDVPPCFIAGAEFDPLIDDSRLLFQTLQTHQQPCQYKMYPGTLHAFLHYSRM MKIADEALREGARYFKAQL >gi|283548478|gb|GG730299.1| GENE 2176 2368917 - 2369879 1002 320 aa, chain - ## HITS:1 COG:STM0489 KEGG:ns NR:ns ## COG: STM0489 COG0276 # Protein_GI_number: 16763869 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Salmonella typhimurium LT2 # 1 320 1 320 320 587 90.0 1e-167 MRQTKTGILLANLGTPDAPTPEAVKRYLRQFLSDQRVVDTSRLLWWPLLRGVILPLRAPR VAKLYQSIWMEDGSPLMVYSKAQQKALAQRLPNTPVALGMSYGSPSLESAVDELLASGVE HIVVLPLYPQYSCSTVAAVWDELARILARKRAIPGVSFIRDYADDSAYIDALAKSARDAF AKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGRE PWLTPYTDETLKMLAEKGTRHIQVMCPGFAADCLETLEEIAEQNREIFLEAGGKQYEYIP ALNATPEHIEMMVKLTAAYR >gi|283548478|gb|GG730299.1| GENE 2177 2370107 - 2370751 973 214 aa, chain - ## HITS:1 COG:STM0488 KEGG:ns NR:ns ## COG: STM0488 COG0563 # Protein_GI_number: 16763868 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Salmonella typhimurium LT2 # 1 214 1 214 214 393 97.0 1e-109 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI VGRRVHAASGRVYHIKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG YYSKEAQAGNTKYAKVDGTQAVADVRAALEKILG >gi|283548478|gb|GG730299.1| GENE 2178 2370984 - 2372858 2549 624 aa, chain - ## HITS:1 COG:STM0487 KEGG:ns NR:ns ## COG: STM0487 COG0326 # Protein_GI_number: 16763867 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Salmonella typhimurium LT2 # 1 624 9 632 632 1165 97.0 0 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGD GELRVRVSFDKDKRTLTIADNGVGMNRDDVIDHLGTIAKSGTKSFLESMGSDQAKDSQLI GQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKDDRGTEITLHL REGEDEFLDDWRVRSIISKYSDHIALPVEIEKSEEKDGETVVSWEKINKAQALWTRNKSE IKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLY VQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRSALTKRVLQML EKLAKDDAEKYQTFWKQFGLVLKEGPAEDHANQETIAKLMRFASTHTDSSAQTVSLEEYV SRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPF QSVAKADESIDKLADEVDESAKEAEKALTPFVERVKTLLGDRVKEVRLTHRLTDTPAIVT TDADEMSTQMAKLFAAAGQAVPDVKYIFELNPDHVLVKRTADTQDEAQFKEWVELLLDQA LFAERGTLEDPNQFIRRMNQLLVS >gi|283548478|gb|GG730299.1| GENE 2179 2372969 - 2373574 460 201 aa, chain - ## HITS:1 COG:STM0486 KEGG:ns NR:ns ## COG: STM0486 COG0353 # Protein_GI_number: 16763866 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Salmonella typhimurium LT2 # 1 201 1 201 201 387 97.0 1e-108 MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADC RTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGP DDIGLDRLEQRLASEQINELILATNPTVEGEATANYIAELCMQYGVEASRIAHGVPVGGE LEMVDGTTLSHSLAGRHKIKF >gi|283548478|gb|GG730299.1| GENE 2180 2373574 - 2373903 228 109 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5 109 9 114 114 92 41 8e-17 MFGKGGLGNLMKQAQQMQEKMQQMQEEVAKLEVTGESGAGLVKVTINGAHNCRRVEIDPS LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF >gi|283548478|gb|GG730299.1| GENE 2181 2373961 - 2375886 1964 641 aa, chain - ## HITS:1 COG:STM0484 KEGG:ns NR:ns ## COG: STM0484 COG2812 # Protein_GI_number: 16763864 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Salmonella typhimurium LT2 # 1 641 1 642 642 1051 92.0 0 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV EQIRHQLEHILKEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASGDGQVSTDAVSTM LGTLDDDQALSLVEAVVAADGERVMTLVNDAAARGIEWEALLVEMSALLHRIAMVQLLPA ALGSDMAAVEQRMRELARIVPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPQQQSAPVQQNVPLSEATSQVLAARSQLQRA QGATKPKKSEPAAASRARPVNNAALERLASVTERVQARPAVSALEKAPTKKEAYRWKATN PVAEVKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSLLSLPKLVEQVALN AWKEENGNVVCLHLRSSQRHLNSSGAQQKLAEALSALTGSTVELTIVEDDNPAVRTPLEW RQAIYEEKLAQARESIIADNNIQTLRRFFDADLDEESIRPI >gi|283548478|gb|GG730299.1| GENE 2182 2376004 - 2376555 841 183 aa, chain - ## HITS:1 COG:STM0483 KEGG:ns NR:ns ## COG: STM0483 COG0503 # Protein_GI_number: 16763863 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 347 96.0 1e-95 MTATAQQLEFLKNSIKSIHDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKV VGTEARGFLFGAPVALGLGVGFVPVRKPRKLPREVIAESYELEYGTDQLEIHVDAIKPGD KVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDLGGEQRLEKQGLTCYSLVPF PGH >gi|283548478|gb|GG730299.1| GENE 2183 2376750 - 2377127 320 125 aa, chain - ## HITS:1 COG:STM0482 KEGG:ns NR:ns ## COG: STM0482 COG2832 # Protein_GI_number: 16763862 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 124 1 124 125 176 92.0 8e-45 MQRIILIIIGWIAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHHWLLYRSWFGGYL RHWQKHRAMPPGAKPRAILLILITFGISLWLVNMMWVRGLLLVILACLLIFMWRIPVVDE KQQKH >gi|283548478|gb|GG730299.1| GENE 2184 2377197 - 2377724 448 175 aa, chain + ## HITS:1 COG:STM0481 KEGG:ns NR:ns ## COG: STM0481 COG3923 # Protein_GI_number: 16763861 # Func_class: L Replication, recombination and repair # Function: Primosomal replication protein N'' # Organism: Salmonella typhimurium LT2 # 5 175 1 171 171 189 74.0 2e-48 MKTVMLLQTLENQFNRLRQRCAPLAHHATLSARFDRQLFHTRSSLLQACLDEAEDNLTAL RRAVDQQQLPQISWLAEHLASQLEAISRETASWSLREWDSASPGLARWQRKRVQHQEFER RLVEMTRERKERLTQATSFEEQQKLHREVEAFEARLARCRHALARIENVLARLTR >gi|283548478|gb|GG730299.1| GENE 2185 2377738 - 2377905 203 55 aa, chain + ## HITS:1 COG:no KEGG:ROD_05241 NR:ns ## KEGG: ROD_05241 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 54 1 54 55 81 94.0 1e-14 MSLENAPDEVKLAVDLIVLLEENQLPARTVLRALEIVMRDYENKLKSAEGASQTD >gi|283548478|gb|GG730299.1| GENE 2186 2377975 - 2378886 720 303 aa, chain + ## HITS:1 COG:STM0479 KEGG:ns NR:ns ## COG: STM0479 COG5464 # Protein_GI_number: 16763859 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 303 1 311 311 465 76.0 1e-131 MERLPTTPHDAVFRQMLTQKEVARDFLQIHLPEAFLNICDMETLTLESGSFIEDDLRTCY SDILYSLQTKHGPGYVYALIEHQSKPDKLMAFRLMRYAVAAMQHHLNAGHKTLPLVVPVL FYHGTESPWPYTLNWHQLFSEPQLAKALYGNEFALVDLTIMPDNQIMQHQRVAMLELLQK HIRQRDLSELLDQLITLLTQDRLSKYQLDVLINYMLKAGNTTEPGVLVRQLAQSAPQYKE QLMTIAEWLEEKGRAEGMQQGLEKGRQAEARSIAQKMLARGLEPDLITHLTGLTQEELTA LTH >gi|283548478|gb|GG730299.1| GENE 2187 2378926 - 2382285 3437 1119 aa, chain - ## HITS:1 COG:ECs0518 KEGG:ns NR:ns ## COG: ECs0518 COG3264 # Protein_GI_number: 15829772 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 1119 3 1120 1120 1879 89.0 0 MLQLYKRSQHLIAIAFLFFILLLSCQSSAFARAQQSGELPTKADIQSQLDALSKQKDLSA QDKLVQQDLIDTIATLDKIDRVKDETVQLRQKVAEAPEKMRQATDALNSLSDVDNDDETR KTLSTLSLRQLESRVAQVLDDLQSAQNDLAAYNSQLVSLQTQPERVQNAMYTASQQMQQI RNRLDGNSVGEAALRPSQQVLLQAQQALLNAQIDQQRKSLEGNTVLQDTLQKQRDYVTAN SNRLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPDEAERIQSNPLVKQELDVNHQLSQRLI AATENGNSLMQQNIKVKNWLDRALQSERNVKEQIAVLKGSLLLSRILYQQQQTLPSADEL SDMTNRIADLRLEQFEVNQQRDALFQNDAFVAKLEEGHSNDVNGEVHDALLQVVDMRREL LDQLNKQLGNQLMMAINLQINQQQLMSVSKNLKGILTQQIFWVNSNRPMDWDWIKAFPQT LKDQFKSMKITVNWEKAWPAVFIAFLAGLPLLLIAGLIRWRLKWLKEYQAKLAAAVGNLR NDSQLNTPKAILIDLIRALPACLIILAVGLILLTMQLNISDLLWAFSKKMTVFWLVFGLC WKVLEKDGVAIRHFGMPAKQTSHWRRQIVRISLALLPLNFWSVVAELSPLNLMDDVLGQS VIFLNLLLIAFLVWPMCRESWRDKESHGLRLVTITVLSIIPIALMVLTATGYFYTTLRLS GRWIETVYLVIVWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPTIA LEQVNQQTLRITMLVMVALFGVLFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKSVT MGSLLFAIIASMVAWALIRNLPGLLEVLVLSRLKMRQGASYAITTILNYAIIAIGAMTVF GSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTFSGTVS KIRIRATTITDFDRKEVIIPNKAFVTERLINWSLSDTTTRLVIRIGVAYGSDLDKVKKVL LQAAMEHPKVMHDPEPAVFFTAFGASTLDHELRLYVRELRDRSHTVDELNRAVDRLCREN DIDIAFNQLEVHLHNAKGDTVTEVKRDIIKGDDPTPSVG >gi|283548478|gb|GG730299.1| GENE 2188 2382419 - 2383069 324 216 aa, chain - ## HITS:1 COG:STM0477 KEGG:ns NR:ns ## COG: STM0477 COG1309 # Protein_GI_number: 16763857 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 211 1 211 217 350 82.0 9e-97 MARKTKQQAQETRQHILDVALRLFSQQGVSSTSLAEIAKAAGVTRGAIYWHFKNKSDLFS EIWELAKPNIDELEIEYQAKFPDDPLSVLREILIYVLEATVTEERRRLLLEIIFHKCEFV GEMATVQLAQRSLCIENYDRIEQTLRHCMNANMLPENLNTRRVAVLLRSYITGIIENWLF APESFDLKKEAREYVAVLLEMCLLCPSLRVNAAKTC >gi|283548478|gb|GG730299.1| GENE 2189 2383211 - 2384404 1330 397 aa, chain + ## HITS:1 COG:ECs0516 KEGG:ns NR:ns ## COG: ECs0516 COG0845 # Protein_GI_number: 15829770 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli O157:H7 # 1 397 1 397 397 612 91.0 1e-175 MNKNRGLTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPEVGVVTLKTEPLQITTELPGRT SAFRIAEVRPQVSGIILKRNFTEGGDIEAGVSLYQIDPATYQAAYESAKGDLAKAQAAAN IAQLTVKRYQKLLGTKYISQQDYDSALADAQQANAAVVAAKAAVETARINLAYTKVTSPI SGRIGKSSVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG KAKVELVTSDGIKFPQAGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG TNPTALLVPQQGVTRTPRGDASALVIGADNKVETRQIVASQAIGDKWLVTDGLKPGDRVI VSGLQKVRPGAQVKAQEITADNNQQAASGSQPEQSKS >gi|283548478|gb|GG730299.1| GENE 2190 2384427 - 2387576 3162 1049 aa, chain + ## HITS:1 COG:STM0475 KEGG:ns NR:ns ## COG: STM0475 COG0841 # Protein_GI_number: 16763855 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Salmonella typhimurium LT2 # 1 1048 1 1048 1049 1897 93.0 0 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAIAITAMYPGADAETVQNT VTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQNKLQLAMPLLPQ EVQQQGVSVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDTISRTSGVGDVQLFGS QYAMRIWMDPNKLNNFQLTPVDIINALKTQNAQVAAGQLGGTPPVKGQQLNASIVAQTRL TNTEEFGKILLKVNQDGSQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANAL DTANAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQ NFRATLIPTIAVPVVLLGTFAVLAIFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFDKSTHHYTDSVGGILRSTGR YLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMAQLPAGATQERTQKVLDEVTNYYLT KEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGEENKVEAITGRAMGAFSQIKD AMVFAFNLPAIVELGTATGFDFQLIDQAGLGHEKLTQARNQLFGEVAKHPDLLVGVRPNG LEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR MLPEDIGNWYVRGGDGQMVPFSAFSTSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA MAMMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFS VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL IEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIF FVPVFFVVVRRRFSRKNEDIEHSHSVDHH >gi|283548478|gb|GG730299.1| GENE 2191 2388067 - 2388441 214 124 aa, chain + ## HITS:1 COG:no KEGG:SG0484 NR:ns ## KEGG: SG0484 # Name: ybaJ # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 124 1 124 124 243 97.0 2e-63 MDEYSPKRHDIAQLKFLCETLYHDCLANLEQSNHGWVNDPTSATSLQLNELIEHIATFAL NYKIKYNEDNKLIAQIDEYLDDTFMLFSSYGINTQDLQKWRKSGNRLFRCFVNATRANPV SLSC >gi|283548478|gb|GG730299.1| GENE 2192 2388469 - 2388687 148 72 aa, chain + ## HITS:1 COG:no KEGG:KPN_00441 NR:ns ## KEGG: KPN_00441 # Name: hha # Def: hemolysin expression-modulating protein # Organism: K.pneumoniae # Pathway: not_defined # 1 72 12 83 83 134 100.0 1e-30 MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY DKIPTSVWKFIR >gi|283548478|gb|GG730299.1| GENE 2193 2388868 - 2389419 522 183 aa, chain + ## HITS:1 COG:STM0472 KEGG:ns NR:ns ## COG: STM0472 COG0110 # Protein_GI_number: 16763852 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 321 83.0 4e-88 MSKEKQKMIAGELYRPADETLRNDRLRARQLTHRYNLTAPDEKSERQAILHDLLGQSEGA YIEPSFRCDYGYNIYLGKEFYANFDCVMLDVCPIHIGDNCMLAPGVHIYTATHPLDATER NSGLELGKPVTIGNNVWIGGRAVINPGVTLGDNVVVASGAVVTKSVPANSVVGGNPARII KTL >gi|283548478|gb|GG730299.1| GENE 2194 2389536 - 2390006 452 156 aa, chain + ## HITS:1 COG:no KEGG:ROD_05131 NR:ns ## KEGG: ROD_05131 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 153 1 153 156 270 86.0 2e-71 MTEIQRLLTETIDDLNIREKRDNKPRFSISFIRKHPGLFIGMYVAWFATLAVMLQSETLV DSVWLLVVLFIILNGFFFFDVAPRYRYEDIDVLDFRVCYNGEWYNTRFVPSSLIDTILRS PAVDSEHKAQLQKMISRKGELSFYDVFTLTRPQTSR >gi|283548478|gb|GG730299.1| GENE 2195 2390083 - 2390223 240 46 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227332016|ref|ZP_03835672.1| hypothetical protein CIT292_01461 [Citrobacter youngae ATCC 29220] # 1 46 1 46 46 97 100 3e-18 MQVLNSLRSAKQRHPDCQIVKRKGRLYVICKTNPRFKAVQGRKKRR >gi|283548478|gb|GG730299.1| GENE 2196 2390225 - 2390485 432 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|237781419|ref|YP_002848366.1| 50S ribosomal protein L31 type B [Citrobacter sp. 30_2] # 1 86 1 86 86 171 91 2e-40 MKPNIHPFYRTVVFHDTSANEYFKVGSTIRTEREIEYEGKTYPYVTLDISSKSHPYYTGK QKTFDNEGSAARFQKRFGHFISAKRG >gi|283548478|gb|GG730299.1| GENE 2197 2390673 - 2392226 1330 517 aa, chain + ## HITS:1 COG:STM0468 KEGG:ns NR:ns ## COG: STM0468 COG4943 # Protein_GI_number: 16763848 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Salmonella typhimurium LT2 # 1 517 1 516 516 768 72.0 0 MTTRHLISLVTGVLFLSILAPVGLSLWLAHRQVETKFIDELDMFSTRVALRTERVGEQAK KALRHIEDFQGVPCSEEHLLEMRRLSYSYRYIQEVLYLKDNIPQCSSLEKSSQAAAFPPA MKITSDGYRAWLTTQNDLGIKRFMAALGSEHYVVMVDPGSFIDVIPFGSWPIEVTIIGTV RNVVVASSADLPADVLQHVKQEHSITHFQKDGSLFNARPFPELGITIVTWASTLPLQKTW HRQALIWLPAGIIIGLLTAAFILRILRRLQSPHHQLQDAIQHRDIKVHYQPIISLKTGKV VGAEALARWQQADGSYLSPDIFVAMAQETGLSEPLTRLIIESVFDDLGKWLRQHPEQHIS INLESADLASETLPALLSHKVNQWQLQPAQIALELTEREFADPKNSAPFIAKYRQAGHSI YIDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYNNVTPHIIEIAKTLKLEMVAEGIET ENQEAWLRQHGVQYGQGWLYSKALPKAEFILWAGKRL >gi|283548478|gb|GG730299.1| GENE 2198 2392278 - 2392631 425 117 aa, chain - ## HITS:1 COG:ECs0509 KEGG:ns NR:ns ## COG: ECs0509 COG5507 # Protein_GI_number: 15829763 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 117 1 117 117 192 87.0 1e-49 MKYVDGFVVAVPAENKEAYIAMAAKAAPLFKEFGALRVVECWADDVPDGKLTDFRMAVKA QDHEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFAPIMEE >gi|283548478|gb|GG730299.1| GENE 2199 2392696 - 2393325 632 209 aa, chain - ## HITS:1 COG:HI0522 KEGG:ns NR:ns ## COG: HI0522 COG2364 # Protein_GI_number: 16272466 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Haemophilus influenzae # 8 184 29 205 218 107 36.0 2e-23 MLRRLLQLYIGLALYGVSTAMFVRADLGADPWNVFHLGVANLLSMNIGVVIIAVGVLVLL AWIPLRQRPGFGTLSNVIMIGLAADAALVVIPGFESLPARGALLVTAVILNALATSLYIG AGFGAGPRDGLMTGIHALTGWPVRRIRTAIEVSVLLTGWLLGGTVGVGTVLYALAIGPLI QICLPWFRYQPQSRIRARSESGARSPAGD >gi|283548478|gb|GG730299.1| GENE 2200 2393413 - 2394840 844 475 aa, chain + ## HITS:1 COG:BS_ydfD KEGG:ns NR:ns ## COG: BS_ydfD COG1167 # Protein_GI_number: 16077604 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus subtilis # 24 442 11 458 482 155 26.0 2e-37 MSSRRYGSQSLQRLLGHWQESPSRTPIWRQLAEALRLLILDGRLALDSRLPGERELAAVL EVSRTTVASAMAQLREEGYLESRHGSGSRVILPEHIRHVPTRTSTGTALDLSTAALSAGP EIHQAYQQALSAMPQHLLSSGYLPQGLSVLRESIARHYCDRGLPTQPDEIMVVNGAVSGL ALILRLLTGPGDRVVVDHPTYPLAIAAIQGASCRPVGVSLPEHGWDTAGLVATIAQTAPR MAYLMPDFHNPTGRCMDAATRQVVADIAERTHTTLVVDETMVNLWYDAPPPPPLAAFNRD APIILLGSAGKSFWGGLRLGWIRASSRTIAALVQTRDTFDLGSPVLEQLATSWLLDNAGG FFPERRRLLTSQRDLCSSLMNTHFPEWQFTQPQGGLSFWVELPDTLATLFATRAESAGIQ LGTGTRFGLDGAFDRFLRMPFALPDDTARAAFRVLQPIWDNLRLQASSGKIRKII >gi|283548478|gb|GG730299.1| GENE 2201 2395169 - 2395480 344 103 aa, chain + ## HITS:1 COG:STM0466 KEGG:ns NR:ns ## COG: STM0466 COG3695 # Protein_GI_number: 16763847 # Func_class: L Replication, recombination and repair # Function: Predicted methylated DNA-protein cysteine methyltransferase # Organism: Salmonella typhimurium LT2 # 1 103 27 129 129 197 98.0 5e-51 MDIQDTFPQRVWQIVASIPEGFVTTYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRV VNRHGTISLTGPDLQRQRQALLAEGIVVSGSGQIDLQRYRWVY >gi|283548478|gb|GG730299.1| GENE 2202 2395512 - 2396081 562 189 aa, chain - ## HITS:1 COG:STM0465 KEGG:ns NR:ns ## COG: STM0465 COG3126 # Protein_GI_number: 16763846 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 189 1 189 189 236 89.0 2e-62 MKLVHMVSGLAVAVALAACADKSADIQTPAPSPNTSISDTQSKIQQPNVSGTVWIRQKVA LPPDAVLTVTLSDASLADAPSKVLSQKAVRTEGKQAPFSFVLPFNPADIQPNARILLSAA ITVNGKLVFITDTVQTVINQGGTKADLTLVPVQQTAVPLNADGGATTTVPSTSPTQVNPS SAVPAPTQY >gi|283548478|gb|GG730299.1| GENE 2203 2396196 - 2396588 482 130 aa, chain - ## HITS:1 COG:STM0465 KEGG:ns NR:ns ## COG: STM0465 COG3126 # Protein_GI_number: 16763846 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 128 1 128 189 178 90.0 2e-45 MKLVHMVSGLAVAVALAACADKSADIQTPAPSPNTSISDTQSKIQQPNVSGTVWIRQKVA LPPDAVLTVTLSDASLADAPSKVLSQKAVRTEGKQAPFSFVLPFNPADIQPNARILLSAA ITVNGKLVSS >gi|283548478|gb|GG730299.1| GENE 2204 2396800 - 2397660 855 286 aa, chain + ## HITS:1 COG:ECs0506 KEGG:ns NR:ns ## COG: ECs0506 COG1946 # Protein_GI_number: 15829760 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA thioesterase # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 506 90.0 1e-143 MSLALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSF HSYFLRPGDSQKPIIYDVEVLRDGNSFSARRVAAIQNGKPIFYMTASFQAAEDGFEHQKT MPDAPGPDELKSETEIARSVAHLLPPLLKEKFINDRPLEVRPVEFHNPLKGHVAPPTRQV WIRANGELQDDLRVHQYLLGYASDLNFLPVALQPYGIGFLEKGIQIATIDHSMWFHRPFN INEWLLYNVESTSASGARGFVRGEFYTQDGVLVASTVQEGVMRNRN >gi|283548478|gb|GG730299.1| GENE 2205 2397733 - 2399019 1672 428 aa, chain - ## HITS:1 COG:ECs0505 KEGG:ns NR:ns ## COG: ECs0505 COG0004 # Protein_GI_number: 15829759 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Escherichia coli O157:H7 # 1 428 1 428 428 707 96.0 0 MKIATMKTGIASLALLPGLAMAAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRG KNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNFNWVLLKNIALTAVTGSFYQY IHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLATHGA LDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAG SAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAVAGLVGVTPACGY IGVGGALIIGVVAGLAGLWGVTMLKRFLRVDDPCDVFGVHGVCGIVGCILTGVFAASSLG GVGFAEGVTMGHQLLVQLESVAITIVWSGVVAFIGYKLADMTVGLRVPEEQEREGLDVNS HGENAYNA >gi|283548478|gb|GG730299.1| GENE 2206 2399051 - 2399389 418 112 aa, chain - ## HITS:1 COG:YPO3143 KEGG:ns NR:ns ## COG: YPO3143 COG0347 # Protein_GI_number: 16123305 # Func_class: E Amino acid transport and metabolism # Function: Nitrogen regulatory protein PII # Organism: Yersinia pestis # 1 112 1 112 112 195 98.0 2e-50 MKLVTVVIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVK IDVAIADDQLDEVIDVISKAAYTGKIGDGKIFVAELQRVIRIRTGETDEAAL >gi|283548478|gb|GG730299.1| GENE 2207 2399597 - 2401375 220 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 346 565 135 355 398 89 33 7e-16 MRSFGQLWPTLKRLLAYGSPWRKQLAIAVVMLWVAAAAEVSGPLLISYFIDNMVAKNNLP LAMVAGLVAAYVGLQLLAAGLHYAQSLLFNQAAVGVVQQLRTDVMDAALRQPLSAFDTQP VGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLEWRMALVAMVIFPAVLV VMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMA RMQTLRLDGFLLRPLLSLFSALILCGLLMLFSFTSGSSIEVGVLYAFISYLGRLNEPLIE LTTQQSMLQQAVVAGERVFELMDGPRQGYGDDGQPLKSGDIEVDNVSFAYRDDNLVLQNI SLSVPSRSFVALVGHTGSGKSTLASLLMGYYPLTQGEIRLDGRPLSSLSHGVLRQGIAMV QQDPVVMADTFLANVTLGRDISEERVWQALETVQLAELARGLSEGIHTRLGEQGNNLSVG QKQLLALARVLVATPQVLILDEATASIDSGTEQAIQQALEAVREHTTLVVIAHRLSTIVD ADTILVLHRGQAVERGTHQQLLAAQGRYWQMYQLQLAGEELAASVNEDSAIA >gi|283548478|gb|GG730299.1| GENE 2208 2401368 - 2403140 212 590 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 349 561 35 253 329 86 29 6e-15 MRLFAQLSWYFRREWRRYLGAVALLIIIAILQLIPPKVVGIIVDGVTAQRFTTERLLMWV GTIALIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSRQHPEFYLRHRTGDLMARA TNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLIALLPMPVMALMIKRYGD RLHNRFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNLRVARI DARFDPTIYIAIGMANLLAIAGGSWMVVHGSLTLGQLTSFMMYLGLMIWPMLALAWMFNI VERGSAAYSRIRAMLAEAPVVNDGTEPVPEGRGELAVAIREFCYPQTTLRALENVNFQLK PGQMLGICGPTGAGKSTVLSLIQRHFDITQGDIRFHDIPLTRLQLDSWRSRLAVVSQTPF LFSDTVGNNIALGRPQATQEEIEHVARLASVHEDILRLPQGYDTEVGERGVMLSGGQKQR ISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEI IVMQHGHIAQRGQHDSLVQQPGWYRDMYRYQQLEAALSDAPESNEEAANA >gi|283548478|gb|GG730299.1| GENE 2209 2403185 - 2403643 503 152 aa, chain - ## HITS:1 COG:ybaO KEGG:ns NR:ns ## COG: ybaO COG1522 # Protein_GI_number: 16128432 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 152 30 181 181 295 94.0 2e-80 MLDKIDRKLLGLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLGRVALLDPEKL GLGLTAFVLIKTQHHSSEWYCRFVTEVTGMPEVLGFWRMAGEYDYLMRVQVADMKSYDEF YKRLVNSVPGLSDVTSSFAMEQIKYTTALPIE >gi|283548478|gb|GG730299.1| GENE 2210 2403760 - 2404815 1101 351 aa, chain + ## HITS:1 COG:STM0458 KEGG:ns NR:ns ## COG: STM0458 COG0031 # Protein_GI_number: 16763839 # Func_class: E Amino acid transport and metabolism # Function: Cysteine synthase # Organism: Salmonella typhimurium LT2 # 1 348 1 348 351 663 89.0 0 MMNSSWVKNAINEINADYQRSADTHLIRLSLPAFPGIQLYLKDESTHPTGSLKHRLARSL FLYGLCNGWIKEGTTIIESSSGSTAVSEAYFARLLGLPFIAVMPSCTAKRKIEQIEFYGG RCHFVESACEIYAASEQLARELNGHYMDQFTYAERATDWRGNNNIADSIFRQMQCEPNPV PRHIVMSAGTGGTSATIGRYIRCQGYDTRLMVVDPENSVFLPFWQDRDATLRSPVGSKIE GIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLETQLGRKVGASTGTNMWGTLQLAARM RDAGETGSLVTLLCDSGERYLETYYNPQWVDTHIGDLTPWKAELAQLLNTR >gi|283548478|gb|GG730299.1| GENE 2211 2404866 - 2405684 788 272 aa, chain - ## HITS:1 COG:STM0457 KEGG:ns NR:ns ## COG: STM0457 COG0561 # Protein_GI_number: 16763838 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 272 1 272 272 504 89.0 1e-143 MARLAAFDMDGTLLMPNHHLGDETLSTLARLRERDITLTFATGRHVLEMRHILGSISLDA FLITGNGTRIHSIEGDVLHRQDLDPNVADTVLHQKWDTTASMHVFNDNGWFTGQEIPSLL QAHVYSGFRYQIVDVKRIPAHQVTKICFCGDHDTLIRLRIQLNEALGEQANLCFSAVDCL EVLPLGCNKGSALAVLSDHLGYSMAECMAFGDAMNDREMLSSVGRGLIMGNAMPQLIAEL PHLSVIGHCRNQAVSHFLTHWLDNPHLPYSPE >gi|283548478|gb|GG730299.1| GENE 2212 2405785 - 2407485 1205 566 aa, chain + ## HITS:1 COG:STM0456 KEGG:ns NR:ns ## COG: STM0456 COG4533 # Protein_GI_number: 16763837 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 565 1 565 566 950 83.0 0 MRLLNRLNQYQRLWQPSNGEPQSATIGELAERCFCSERHVRTLLKQAQDAGWLEWHAQSG RGKRGQLCFLVTPDSLRNTMMEQALQKGEQLNVLELAQLAPGELRTLLQPFMGGQWQNDT PTLRIPYYRQLDPLHPGFLPGRAEQHLAGQIFSGLTRFDTNTQRPCGDLAHHWNISADGL RWDFYIRSTLYWHNGDAVSSTQLHQQLLMLLELPTLNKLFISVKRIEVTHPQCLTFVLHR PDFWLAHRLASYSSHLAHPEHPFVGTGPFRLTLFTPELVRIESHDHYHLSHPLLKAIEYW ITPQLFSQDLGTSCRHPVQIAIGKPEELPMLSQVSSGISLGFCYLTLKKSARLNTLQARR LVNIIHRSSLLQTLNVDENLITPSNALLPGWTIPQWDELDEVALPEKLTLAYHLPVELHA MAEQLRQALALLGCELTLIFHNAKNWDGNHPLAQADLMMGDRLIGEAPEYTLEQWLRCDQ LWSHVLNAPEYTHLQTTLDALQVQANEDDRHAALQQVFATLMHDATLTPLFNYHYRISAP PGVNGVRLNPRGWFEFTEAWLPPPSA >gi|283548478|gb|GG730299.1| GENE 2213 2407550 - 2408245 704 231 aa, chain + ## HITS:1 COG:ECs0498 KEGG:ns NR:ns ## COG: ECs0498 COG0603 # Protein_GI_number: 15829752 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Escherichia coli O157:H7 # 1 231 1 231 231 462 94.0 1e-130 MKRAVVVFSGGQDSTTCLAQALHQYDEVHCVTFDYGQRHRAEIDVARDLALKLGARAHKV LDVTLLSELAVSSLTRDNIPVPDYEPDANGIPNTFVPGRNILFLTLAAIYAYQVQAEAVI TGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWALADYWGKLDL VRAETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKPAVMAAMKQKTGLK >gi|283548478|gb|GG730299.1| GENE 2214 2408304 - 2408702 506 132 aa, chain - ## HITS:1 COG:STM0454 KEGG:ns NR:ns ## COG: STM0454 COG0824 # Protein_GI_number: 16763835 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Salmonella typhimurium LT2 # 1 132 1 132 132 245 96.0 1e-65 MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENTDSFQWMTAHNIAFVVVNININY RRPAVLSDLLTITSQVQQLNGKSGVLNQTITLEPEGQVVADALITFVCIDLKTQKALPLE GELREKLEQMVK >gi|283548478|gb|GG730299.1| GENE 2215 2408809 - 2409183 288 124 aa, chain - ## HITS:1 COG:STM0453 KEGG:ns NR:ns ## COG: STM0453 COG1555 # Protein_GI_number: 16763834 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Salmonella typhimurium LT2 # 1 124 1 124 124 168 84.0 3e-42 MKHGIKALLITLSLTCAGMAQSALAAEPVAKSQATQLKADASGTAQSKATQPAKASDDEG TRVSINSASAEELARVMNGVGLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSSLVERNLA VLTL >gi|283548478|gb|GG730299.1| GENE 2216 2409330 - 2411204 2348 624 aa, chain - ## HITS:1 COG:ybaU KEGG:ns NR:ns ## COG: ybaU COG0760 # Protein_GI_number: 16128426 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli K12 # 1 623 1 623 623 984 88.0 0 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGKNYAAKVNGQEISRGQFENAFN SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVKQA IFTTPSFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAGTDFMLKGET DELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRVSYIKLDA AAMQETASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFAALAK EKSADIISARKGGDMGWLEESTTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDDVQPAQ VKPLSEARDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLAGAEQAAGMKAVETGWFS RDSLPKELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEHKAEAVKPLA EVKEQVTALVKHNKAVQQAKLDADKLLADLKAGKGDDAMKAAGLSFGEAKTLSRTGQDPL SQAAFGLSLPAQDKPSYGVANDMQGNVVLLALEEVKAGSMPEAQKKAMVQGITQNNAQIT FEALMSNLRKAAKIKVGDALEQQQ >gi|283548478|gb|GG730299.1| GENE 2217 2411473 - 2411745 355 90 aa, chain - ## HITS:1 COG:YPO3154 KEGG:ns NR:ns ## COG: YPO3154 COG0776 # Protein_GI_number: 16123316 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Yersinia pestis # 1 90 1 90 90 127 93.0 4e-30 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG RNPQTGKEITIAAAKVPGFRAGKALKDAVN >gi|283548478|gb|GG730299.1| GENE 2218 2411955 - 2414309 3092 784 aa, chain - ## HITS:1 COG:STM0450 KEGG:ns NR:ns ## COG: STM0450 COG0466 # Protein_GI_number: 16763831 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Salmonella typhimurium LT2 # 1 784 1 784 784 1464 98.0 0 MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEAST DEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLDSP AIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADK QSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE LGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQ VPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV GKTSLGQSIAKATGRKYIRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLF LLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP LLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIVGIIRYYTREAG VRSLEREISKLCRKAVKQLLLDNSLKHIVINGENLHDYLGVQRFDYGRADNENRVGQVTG LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINSDFYE KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLK EKLLAAHRGGIKTVLIPDENKRDLEEIPDNVIADLDIHPVKRIEEVLSLALQNEPSGMQV VTAK >gi|283548478|gb|GG730299.1| GENE 2219 2414494 - 2415768 1702 424 aa, chain - ## HITS:1 COG:ECs0492 KEGG:ns NR:ns ## COG: ECs0492 COG1219 # Protein_GI_number: 15829746 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease Clp, ATPase subunit # Organism: Escherichia coli O157:H7 # 1 424 1 424 424 808 98.0 0 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT SKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAQSDKASEGELLSQVEPEDLIKFGL IPEFIGRLPVVATLSELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFREEALDAIAK KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIGGQSKPLLIYGKPEAQQ ASGE >gi|283548478|gb|GG730299.1| GENE 2220 2415895 - 2416518 745 207 aa, chain - ## HITS:1 COG:STM0448 KEGG:ns NR:ns ## COG: STM0448 COG0740 # Protein_GI_number: 16763829 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 410 98.0 1e-115 MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFMTGQVEDHMANLIVAQ MLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIER DTERDRFLSASEAVEYGLVDSILTHRN >gi|283548478|gb|GG730299.1| GENE 2221 2416765 - 2418063 1746 432 aa, chain - ## HITS:1 COG:STM0447 KEGG:ns NR:ns ## COG: STM0447 COG0544 # Protein_GI_number: 16763828 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Salmonella typhimurium LT2 # 1 432 1 432 432 729 97.0 0 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNVVAQRYGA SVRQDVLGDLMSRNFVDAIIKEKINPAGAPNYVPGEYKLGEDFTYAVEFEVYPEVELTGL EAIEVEKPVVEVTDADVDVMLDTLRKQQATWKDKDGAADAEDRVTIDFTGSVDGEEFEGG KASDFVLAMGQGRMIPGFEEGVKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKV EERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANDI DVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNEL KADEERVKGLIEEMASAYEDPKEVVEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEK ATSFNELMNQQA >gi|283548478|gb|GG730299.1| GENE 2222 2418410 - 2418727 266 105 aa, chain - ## HITS:1 COG:STM0446 KEGG:ns NR:ns ## COG: STM0446 COG0271 # Protein_GI_number: 16763827 # Func_class: T Signal transduction mechanisms # Function: Stress-induced morphogen (activity unknown) # Organism: Salmonella typhimurium LT2 # 1 105 1 105 105 202 95.0 1e-52 MMIREQIEEKLKAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMI YGTLTAELSTTVHALALHTYTIKEWEALQDTIFASPPCRGAGSIA >gi|283548478|gb|GG730299.1| GENE 2223 2419033 - 2419611 649 192 aa, chain + ## HITS:1 COG:yajG KEGG:ns NR:ns ## COG: yajG COG3056 # Protein_GI_number: 16128419 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized lipoprotein # Organism: Escherichia coli K12 # 1 192 35 226 226 332 92.0 2e-91 MFKKILFPLVAMFMLAGCATPPTTIEVSPKITLPQQDPSLMGVTVSINGADQRQDQALAK VTRDNQLVTLTASRDLRFLLQEVLEKQMTARGYMIGPNGAVNLQIIVNQLYADVSQGSVR YNIATKADIAIIATAANGNKMTKNYRASYSVEGALQASNKNIADAVNSVLTDTIADMSQD TSVHDFIKQNAR >gi|283548478|gb|GG730299.1| GENE 2224 2419656 - 2421131 1478 491 aa, chain + ## HITS:1 COG:STM0444 KEGG:ns NR:ns ## COG: STM0444 COG0477 # Protein_GI_number: 16763825 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 490 1 490 491 789 92.0 0 MSSHYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYV FKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLISIAAMGFLEPGTQLRWMAALAVVIAFC SASQDIVFDAWKTDVLPTEERGAGAAISVLGYRLGMLVSGGLALWMADRWLGWQGMYWLM AVLLIPCIIATLLAPEPTDAIPVPKTLEQAVAAPLRDFFGRNNAWLILLLIVLYKLGDAF AMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGILQG ASNAGYWLLSITDKHMFSMAAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSAL SAVGRVYVGPVAGWFVEAHGWPTFYLFSVFAAIPGLLLLLVCRQTLEHSWQNESFMPRTE FRGAYGLALMTLVVGCCLLAVWLLLLTLNALDYTNFSFLPELLEISVVVAVCGVVFGGLL DFLALRKTRLA >gi|283548478|gb|GG730299.1| GENE 2225 2421593 - 2422549 811 318 aa, chain + ## HITS:1 COG:STM0443 KEGG:ns NR:ns ## COG: STM0443 COG1622 # Protein_GI_number: 16763824 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 318 1 318 318 621 96.0 1e-178 MRLRKYNKSLGWLTLIAGTTLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAIL MAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVEFKVTSNSVMNSFFIPRLG SQIYAMAGMQTRLHLIANEVGTYDGISASYSGPGFSGMKFKAIATKDRAEFDQWVAKAKQ SPNTMNDMAAFEKVAVPSEYNQVEYFSNVKPDLFKDVINKFMAHGKSMDMTQPEGEHSAH EGMEGMDMSHAESANSRG >gi|283548478|gb|GG730299.1| GENE 2226 2422561 - 2424552 2154 663 aa, chain + ## HITS:1 COG:ECs0485 KEGG:ns NR:ns ## COG: ECs0485 COG0843 # Protein_GI_number: 15829739 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Escherichia coli O157:H7 # 1 663 1 663 663 1197 94.0 0 MFGKLTLDAVPFHEPIVMVTIAAIIIGGAALLGLITYFGKWTYLWKEWLTSVDHKRLGIM YVIVAIVMLIRGFADAVMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLSLGVGEFAQTGWLAYPPLSGIE YSPSVGVDYWIWAVQLSGIGTTLTGINFFVTIIKMRAPGMTMFKMPVFSWASLCANILII ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSE VAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTG VKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF HNVIIGGVVFGCFAGMTYWWPKAFGFTLNETWGKRAFWFWIIGFFVAFMPLYVLGFMGMT RRLSQQIDPQFHPMLVVAACGAALIALGILCQFIQMYVSIRDRDQNRDLTGDPWGGRTLE WATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKQPAHYEEIHMPKNSGAGIVITAFAT LFGFAMIWHIWWLAIASFAGMIISWIVKSFDEDVDYYVPVQEVEKLENQHFDEITKAGLK NGN >gi|283548478|gb|GG730299.1| GENE 2227 2424542 - 2425156 761 204 aa, chain + ## HITS:1 COG:STM0441 KEGG:ns NR:ns ## COG: STM0441 COG1845 # Protein_GI_number: 16763822 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Salmonella typhimurium LT2 # 1 204 1 204 204 364 98.0 1e-101 MATDTLTHATAHAHEHGHHDAGQTKIFGFWVYLMSDCILFSILFATYAVLVNGTAGGPTG KDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFIGMELYEF HHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCL SLFWHFLDVVWICVFTVVYLMGAM >gi|283548478|gb|GG730299.1| GENE 2228 2425156 - 2425485 355 109 aa, chain + ## HITS:1 COG:STM0440 KEGG:ns NR:ns ## COG: STM0440 COG3125 # Protein_GI_number: 16763821 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Salmonella typhimurium LT2 # 1 109 1 109 109 157 94.0 4e-39 MSHSNESGGASHGSVKTYMTGFILSIILTVIPFWMVMTGSASPAVILGTILAMAVVQILV HLVCFLHMNSKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH >gi|283548478|gb|GG730299.1| GENE 2229 2425500 - 2426387 1086 295 aa, chain + ## HITS:1 COG:STM0439 KEGG:ns NR:ns ## COG: STM0439 COG0109 # Protein_GI_number: 16763820 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Salmonella typhimurium LT2 # 1 295 2 296 296 522 97.0 1e-148 MFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYID RDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYV GVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDSGALILLAIFSLWQMPHSYAIA IFRFKDYQAANIPVLPVVKGISVAKNHITLYIVAFAIATLMLTLGGYAGYKYLIVAAAVS VWWLGMALRGYKVEDDRVWARKLFGFSIIAITALSVMMSVDFMVPNSQNLLTYVW >gi|283548478|gb|GG730299.1| GENE 2230 2426610 - 2427974 1502 454 aa, chain + ## HITS:1 COG:yajR KEGG:ns NR:ns ## COG: yajR COG0477 # Protein_GI_number: 16128412 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 454 3 456 456 724 88.0 0 MNDYKMTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEALIGLAIGIYGLA QAVFQIPFGLLSDRIGRKPLIVGGLAVFVLGSVIAALSDSIWGIILGRALQGSGAIAAAV MALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHALGLHALFWMIAALATTGIV LTIWVVPNSTSHVLNRESGMVKGSFSKVLAEPKLLKLNFGIMCLHILLMSTFVALPGQLA KAGFPAAEHWKIYLVTMLLSFVSVVPFIIYAEVKRQMKRVFLACVLLILVAEIVLWNANI RFWGLIAGVQIFFLAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGW VVEMFDGQAVFLAGALLAAIWLLVASTMKEPPYVSSLRVEIPPEIAADDTLKQRLLAKEG ISEVLIVAQEHSAYVKIDSKVTNRFEVEQAISQA >gi|283548478|gb|GG730299.1| GENE 2231 2428069 - 2428560 784 163 aa, chain - ## HITS:1 COG:STM0435 KEGG:ns NR:ns ## COG: STM0435 COG1666 # Protein_GI_number: 16763815 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 163 7 169 169 270 93.0 1e-72 MPSFDIVSEVDLQEARNAVDNASREVESRFDFRGVEATFELNESNKTIKVLSESDFQVNQ LLDILRAKLLKRGIEGTSLDVPETFVHSGKTWFVEAKLKQGIESAVQKKIVKLIKDSKLK VQAQIQGEEIRVTGKARDDLQSVMALVRGGDLGQPFQFKNFRD >gi|283548478|gb|GG730299.1| GENE 2232 2428735 - 2429646 706 303 aa, chain + ## HITS:1 COG:STM0434 KEGG:ns NR:ns ## COG: STM0434 COG1893 # Protein_GI_number: 16763814 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Salmonella typhimurium LT2 # 1 303 1 303 303 562 87.0 1e-160 MKITVLGCGALGQLWLTTLCKHGHEVQGWLRVPQPYCSVNLIDTDGSVFNESLTANDPDF LAKSDLLLVTLKAWQVSDAVKGLAAILPETTPILLIHNGMGTIEELQSIKQPLLMGTTTH AARRDGNVIIHVAQGTTRIGPAREQDGDFSYLAETLQEVLPDVAWHNNIRAELWRKLAVN CVINPLTALWDCPNGELRQHPEKIALICEEVAAVIEREDHHTSADDLRYYVEQVIDSTAE NISSMLQDIRAMRHTEIDYITGYLLKRARAHGIAVPENARLFEMVKRKESEYERSSTGLS RPW >gi|283548478|gb|GG730299.1| GENE 2233 2429609 - 2430199 563 196 aa, chain + ## HITS:1 COG:ECs0478 KEGG:ns NR:ns ## COG: ECs0478 COG0693 # Protein_GI_number: 15829732 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli O157:H7 # 1 196 3 198 198 354 91.0 4e-98 MSAQALVCLAPGSEETEAVTTIDLLVRGGIQVTTASVASDGGLTIVCSRGVKLLADAPLV EVADGDFDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFP IGNMTGFPALKDKIPAEQWQDKRVVWDPRVNLLTSQGPGTSIDFGLKIIDLLVSREKAHE VASQLVIAAGIYNYYE >gi|283548478|gb|GG730299.1| GENE 2234 2430232 - 2431284 823 350 aa, chain + ## HITS:1 COG:no KEGG:Varpa_0262 NR:ns ## KEGG: Varpa_0262 # Name: not_defined # Def: hypothetical protein # Organism: V.paradoxus_EPS # Pathway: not_defined # 40 347 38 347 351 126 29.0 1e-27 MKGYLSTLALLLLSSHASATQLEIKNLEYRYPNSTEMQYRVPWFTSTDNPQVAKRINDYI FASFINQLPGNSPQTTVNQFANSEMNPTANLDYAVEYRDDKILSLNITVEGCGAYCESYN VPVNFDLASGAAITLSDLFSRSTMAELNTRIRKDIRSQIDTFVAAQKEGEDSGYAEFYAS CATYTDGLYYIDKFSLQKDHLAFLNGRCSNHANRAGDELGDFTTKIPTEELHNQFTPYGQ YLTGAKSTTPVEPTPGIDGKVMYGTLGKSMRIVLKVDCNYGDFFEGAYFYQKFGAPIELT GKCDTANNQHYELKTSAEEQSKEKITLDLKDGVYQGVWESNGKTLPVRFE >gi|283548478|gb|GG730299.1| GENE 2235 2431385 - 2432782 1816 465 aa, chain - ## HITS:1 COG:ECs0477_1 KEGG:ns NR:ns ## COG: ECs0477_1 COG0301 # Protein_GI_number: 15829731 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 385 18 402 402 727 93.0 0 MRLRFIKILTGNIRNVLKHYDEDLAVVRHWDHVEVRAKDESQRLDIRDALTRIPGIHHIL EVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIE SARVKLTKPDVTVNLEIENDRLLLVKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYML MRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFIAINFEPVVGEILEKVDD GQMGVVLKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLI SHDKEHIINLAREIGTEDFARTMPEYCGVISKSPTVKAVKAKIEAEEENFDFSILDKVVE EANNIDIRDIAQQTQQTVVEVETVSGFGPNDVILDIRSVDEQDDKPLKVEGVDVVPLPFY KLSTKFGDLDQSKTWLLWCERGVMSRLQALYLREQGFENVKVYRP >gi|283548478|gb|GG730299.1| GENE 2236 2433042 - 2433284 328 80 aa, chain + ## HITS:1 COG:ECs0476 KEGG:ns NR:ns ## COG: ECs0476 COG1722 # Protein_GI_number: 15829730 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Escherichia coli O157:H7 # 1 80 1 80 80 110 92.0 6e-25 MPKKNEAPASFETALSELEQIVTRLEGGDLPLEEALNEFERGVQLARQGQVKLRQAEQRV QILLSDTEDAALTPFTPDNE >gi|283548478|gb|GG730299.1| GENE 2237 2433285 - 2434184 929 299 aa, chain + ## HITS:1 COG:STM0423 KEGG:ns NR:ns ## COG: STM0423 COG0142 # Protein_GI_number: 16763803 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Salmonella typhimurium LT2 # 1 299 1 299 299 486 92.0 1e-137 MDFTQQLQACVEQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGQMFG VSLSTLDAPAAAVECIHAYSLMHDDLPAMDNDDLRRGLPTCHVKFGEANAILAGDALQTL AFSIISDAPMPEVADRDRIAMLSELAQASGIAGMCGGQALDLEAEGHQVELDALERIHRH KTGALIRAAVRLGALSAGDKGRECLAILDKYAESIGLAFQVQDDILDVVGDTATLGKRQG ADQQLGKSTYPALLGLEQARNKARDLIEDARQSLSLLAAQSLDTSALEALADYIIQRDK >gi|283548478|gb|GG730299.1| GENE 2238 2434209 - 2436071 2059 620 aa, chain + ## HITS:1 COG:ECs0474 KEGG:ns NR:ns ## COG: ECs0474 COG1154 # Protein_GI_number: 15829728 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Escherichia coli O157:H7 # 1 620 1 620 620 1241 96.0 0 MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELT VALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSV GHSSTSISAGIGIAVAAEKEGKERRTVCVIGDGAITAGMAFEAMNHAGDIKPDMLVILND NEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPG TLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHIMTKKGRGYEPAEKDPITFHA VPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFP DRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQVLHDVAIQKLPVLFAVDR AGIVGADGQTHQGAFDLSFLRCIPEMVIMAPSDENECRQMLFTGYHYNNGPSVVRYPRGN AVGVELTPLEKLPIGKGLVKRHGEKLAILNFGTLMPEAAQVAESLNATLVDMRFVKPLDE TLILEMAAQHDVLVTIEENAIMGGAGSGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQDEA RAELGLNAAGIEAKIKAWLA >gi|283548478|gb|GG730299.1| GENE 2239 2436128 - 2437102 1030 324 aa, chain + ## HITS:1 COG:yajO KEGG:ns NR:ns ## COG: yajO COG0667 # Protein_GI_number: 16128404 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 324 25 348 348 627 95.0 1e-180 MQYNTLGKTDLRVSRLCLGCMTFGEPNRGNHAWTLPEESSRPIIKRAIEGGINFFDTANS YSAGSSEEIVGRALRDFTRREDVVVATKVFHQVDDLAEGLSRAQILRSIDDSLRRLGMDY VDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMHASQFAQALALQKQHGWAQFV SMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGRLTRPWGETTARLVSDEVGKNLY SESDENDAQIAARLAGVSEELGVTRAQVALAWLLSKPGVAAPIIGTSREEQLDELLNAVD LTLKPEQIAELETPYKQHPVVGFK >gi|283548478|gb|GG730299.1| GENE 2240 2437206 - 2437784 458 192 aa, chain - ## HITS:1 COG:STM0420 KEGG:ns NR:ns ## COG: STM0420 COG1267 # Protein_GI_number: 16763800 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Salmonella typhimurium LT2 # 21 192 1 171 171 299 91.0 2e-81 MWKAFTLRAMENPSRSTGKDMTILPRLKKDVAKSRLSMRNPWHLLATGFGSGLSPIIPGT MGSLAAIPFWYLMTFLPWQLYSLVVMLSICIGVYLCHQTAKDMGVHDHGSIVWDEFVGMW ITLMALPTLDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGTGIMIDDIVAGILSAGIL YFIGHHWPVGII >gi|283548478|gb|GG730299.1| GENE 2241 2437702 - 2438679 1025 325 aa, chain - ## HITS:1 COG:thiL KEGG:ns NR:ns ## COG: thiL COG0611 # Protein_GI_number: 16128402 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Escherichia coli K12 # 1 325 1 325 325 582 88.0 1e-166 MACGEFSLIARYFDRVRTSRLDVETGIGDDCALLNIPEKQTLAISTDTLVAGNHFLPDID PADLAWKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLEAFSDGLFELLNYYDMQLIG GDTTRGPLSMTLGIHGYVPVGRALKRSGAKPGDWIYVTGTPGDSAAGLAILQDRLQVADA QDADYLLKRHLRPTPRILQGQALRDLASAAIDLSDGLISDLGHIVNASGCGARVNVDALP YSTAFSQHVEPEQALRWALSGGEDYELCFTVPEINRGALDVALAHLGTSFTCIGQMSADV EGVHFTRDGKPVTFDWKGYDHFAAP >gi|283548478|gb|GG730299.1| GENE 2242 2438756 - 2439175 524 139 aa, chain - ## HITS:1 COG:STM0418 KEGG:ns NR:ns ## COG: STM0418 COG0781 # Protein_GI_number: 16763798 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Salmonella typhimurium LT2 # 1 139 1 139 139 247 100.0 4e-66 MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSA YLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAEDSH KFVNGVLDKAAPVIRPNKK >gi|283548478|gb|GG730299.1| GENE 2243 2439195 - 2439665 580 156 aa, chain - ## HITS:1 COG:ECs0468 KEGG:ns NR:ns ## COG: ECs0468 COG0054 # Protein_GI_number: 15829722 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 254 98.0 6e-68 MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQVKDENITVVWVPGAYEL PLAADALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQDSGIPVAFGVLTTE SIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA >gi|283548478|gb|GG730299.1| GENE 2244 2439756 - 2440859 1096 367 aa, chain - ## HITS:1 COG:ribD_2 KEGG:ns NR:ns ## COG: ribD_2 COG1985 # Protein_GI_number: 16128399 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Escherichia coli K12 # 144 367 1 224 224 393 86.0 1e-109 MQDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAG EKAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGI DVSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDV QRLRAQSHAILTSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTP EHRIVQQPGETWIVRTQDDTRHWPESVRSIKVPEHNGHLDLVVLMMQLGKQQINSIWVEA GPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV CLHLITA >gi|283548478|gb|GG730299.1| GENE 2245 2440863 - 2441312 432 149 aa, chain - ## HITS:1 COG:STM0415 KEGG:ns NR:ns ## COG: STM0415 COG1327 # Protein_GI_number: 16763795 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Salmonella typhimurium LT2 # 1 149 1 149 149 275 97.0 2e-74 MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP FNEDKLRSGMLRALEKRPVSSDDVEMALNHIKSQLRATGEREVPSKMIGNLVMEQLKKLD KVAYIRFASVYRSFEDIKEFGEEIARLQD >gi|283548478|gb|GG730299.1| GENE 2246 2441467 - 2442006 511 179 aa, chain + ## HITS:1 COG:no KEGG:CKO_02749 NR:ns ## KEGG: CKO_02749 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 179 7 185 185 290 91.0 2e-77 MTRRYLRILLVGSLFSLSACAQQSEVRQMHQSVSTLNKEMTQLNQETVKITQQNMLNAKS TSGAYLLPGSKTPARLESQIGTLRMSLMNIAPNADGTRLTLRIQGESNTPLPAFSATVEY GQIQGTTENYQEVNVQNQLVNAPASILAPSDVDIPLQINGLSPDQLGFVRIHDVQPVSQ >gi|283548478|gb|GG730299.1| GENE 2247 2442360 - 2443292 1213 310 aa, chain + ## HITS:1 COG:STM0413 KEGG:ns NR:ns ## COG: STM0413 COG3248 # Protein_GI_number: 16763793 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Nucleoside-binding outer membrane protein # Organism: Salmonella typhimurium LT2 # 24 310 1 287 287 496 94.0 1e-140 MKCIETQIAHFSFPKGISNSGIHMKKTLLAAGAVLALSSSFTANAAENDKPQYLSDWWHQ SVNVVGSYHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGS PLFMEIEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTG LPMGLSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVPITQVWGGQLTYIGFTNFDWGSD LGDDPNRTSNSIASSHVLALNYDHWHYSVVARYFHNGGQWKGGDTLNWGEGDFSAKSTGW GGYLVVGYNF >gi|283548478|gb|GG730299.1| GENE 2248 2444171 - 2445142 1081 323 aa, chain - ## HITS:1 COG:ECs0460 KEGG:ns NR:ns ## COG: ECs0460 COG0341 # Protein_GI_number: 15829714 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecF # Organism: Escherichia coli O157:H7 # 1 323 1 323 323 591 95.0 1e-169 MAQEYTVEQLNHGRKVWDFMRWDYWAFGISGFLLIAAVVIMGVRGFNWGLDFTGGTVIEI TLEKPADMDVMRDALEKAGFVEPLLQNFGSSHDIMVRMPPTEGADGGQVLGSKVLSVINE STNQNAAVKRIEFVGPSVGADLAQTGAMALMAALISILVYVGFRFEWRLAAGVVIALAHD VIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS LTQTLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLG MKREHMLQQKVEKEGADQPSILP >gi|283548478|gb|GG730299.1| GENE 2249 2445153 - 2446967 2218 604 aa, chain - ## HITS:1 COG:ECs0459 KEGG:ns NR:ns ## COG: ECs0459 COG0342 # Protein_GI_number: 15829713 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Escherichia coli O157:H7 # 1 604 12 615 615 1076 95.0 0 MLVVVIVVGLLYALPNLYGEDPAVQITGVRGAAASEQTLIQVQKTLQEDKITPKSVALEE GAILARFDSTDTQLRAREVLMGVLGDQYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGV HFLMEVDMDTALSKLQEQNIDSLRSDLREKGIPYTTVRKEDNYGLSITFRDSNARDEAIS YLSKRHQDLVISSQGSNALRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQ PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE YKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIA PIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIV GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAINEGYAGAFS SIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVK KLSI >gi|283548478|gb|GG730299.1| GENE 2250 2447028 - 2447360 559 110 aa, chain - ## HITS:1 COG:ECs0458 KEGG:ns NR:ns ## COG: ECs0458 COG1862 # Protein_GI_number: 15829712 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Escherichia coli O157:H7 # 1 110 1 110 110 195 97.0 1e-50 MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKNLMNSIAKGD EVLTNGGLVGRVTKVAESGYIAIALNDTTEVVIKRDFVAAVLPKGTMKAL >gi|283548478|gb|GG730299.1| GENE 2251 2447383 - 2448510 916 375 aa, chain - ## HITS:1 COG:STM0405 KEGG:ns NR:ns ## COG: STM0405 COG0343 # Protein_GI_number: 16763785 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Salmonella typhimurium LT2 # 1 375 1 375 375 790 98.0 0 MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPEEVEATGAQIILGNTFH LWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIRKITEQGVHFRNPINGDPI FLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRDRFDSLGNKN ALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVGEPKEDMHRILEHVCPQIPADKP RYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKHKSDTSPLDA ECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTD FYQRQGRPVPPVNVD >gi|283548478|gb|GG730299.1| GENE 2252 2448719 - 2449783 1287 354 aa, chain - ## HITS:1 COG:ECs0456 KEGG:ns NR:ns ## COG: ECs0456 COG0809 # Protein_GI_number: 15829710 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Escherichia coli O157:H7 # 1 353 1 353 356 651 92.0 0 MRVTDFTFELPESLIAHYPQAERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNN TRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESIKATMV ARHDALFEVEFDDERSVLDILNAIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPT AGLHFDERLLAKLREKGIEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAV LAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIAPFFGDTQIFIYPGYQYKVIDALVTNF HLPESTLIMLVSAFAGYKNTMHAYHEAVKAEYRFFSYGDAMFITYNPQAISERP >gi|283548478|gb|GG730299.1| GENE 2253 2449874 - 2450455 559 193 aa, chain + ## HITS:1 COG:STM0403 KEGG:ns NR:ns ## COG: STM0403 COG3124 # Protein_GI_number: 16763783 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 193 1 193 193 311 86.0 3e-85 MNFLAHLHLAHLADSSLSGNLLADFVRGNPAASFPPDVVEGIFMHRRIDVMTDNLPQVRE AKEWFRSETRRVAPITLDVMWDHFLSRHWPEISPDFPLTEFVRYARTQVTTILPESPPRF INLNNYIWSEKWLERYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDTHYDALEERFWQF YPQMMEQAQRKTL >gi|283548478|gb|GG730299.1| GENE 2254 2450624 - 2451226 821 200 aa, chain + ## HITS:1 COG:STM0402 KEGG:ns NR:ns ## COG: STM0402 COG0450 # Protein_GI_number: 16763782 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 1 200 1 200 200 404 95.0 1e-113 MVLVTRQAPDFTAAAVLGSGEIVENFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKR YEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGAVKYAMVADIKREIQKAYGIEHPE AGVALRGSFLIDANGVVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKE GMNASPDGVAKYLTENVSSL >gi|283548478|gb|GG730299.1| GENE 2255 2451302 - 2453170 2152 622 aa, chain - ## HITS:1 COG:PA2699 KEGG:ns NR:ns ## COG: PA2699 COG1574 # Protein_GI_number: 15597895 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase with the TIM-barrel fold # Organism: Pseudomonas aeruginosa # 4 622 2 612 612 972 74.0 0 MSQTATLILTHGKIHTLDRQNPQVEAVAIVNGKILATGSHDRIMSFAAEGTKIVDLQGHT VIPGLNDSHLHLIRGGLNYNLELRWEGVPSLVDALRMLKEQADRTPSPQWVRVVGGWSEF QFAERRMPTLEELNEAAPDTPVFVLHLYDRALLNRAALKAVGYTKATPDPAGGEIVRDGN GNPTGMLIAKPNAMILYSTLAKGPKLPLEMQVNSTRQFMRELNRLGLTSAIDAGGGFQNY PEDYEIIEQLHANKQMTVRIAYNLFTQRPKQELDDFERWTDMLKPGQGTDFYRANGAGEM LVFSAADFEDFLQPRPDLPEGMEEELERVVRHLVEHRWPFRLHATYDESISRMLDVFEKV NRDIPFNGLHWFFDHAETITERNIERVKALGGGIAVQHRMAFQGEYFVDRYGKDAVKHTP PVAKMLAADVPVGLGTDATRVASYNPWTALYWLVSGRTVGGMAMYGDNNRLPRDVALELW TAGSAWFSSEQGKKGRIEKDQLADLVVLSKDYFSVPEEEIKGIESVMTIVDGKVVYAAGH FTPLAPPAIPVVPDWSPVVKVPGHYRSAPPVAAKVGAMVQMHQCCGSCGVHGHQHDIARK SGIPVSDDRAFWGALGCSCFAF >gi|283548478|gb|GG730299.1| GENE 2256 2453192 - 2453737 600 181 aa, chain - ## HITS:1 COG:DR2141 KEGG:ns NR:ns ## COG: DR2141 COG3224 # Protein_GI_number: 15807135 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 3 180 7 184 184 105 35.0 5e-23 MAQNKHVTLVITHTLQPEQAQRYEQWLGKIMPVAAEFPGHLGANVIRPADGDSLWNIIIR FDTLEHLYNWTQSDTRRVLVEEIAPLLAEGDKTEIRTEAAFWFTPPAPHVRQPRRWKQFL ITLLVIFPSTNLVPWLTGIVLPAMKGSLLLHLINDACVVALVVWFWMPIVTRLFAGWLKK A >gi|283548478|gb|GG730299.1| GENE 2257 2453912 - 2454553 820 213 aa, chain - ## HITS:1 COG:PA2698 KEGG:ns NR:ns ## COG: PA2698 COG1335 # Protein_GI_number: 15597894 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Pseudomonas aeruginosa # 5 211 6 213 226 290 67.0 1e-78 MSIRELIDPKNSTLIFIDHQPQMSFGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVET KSFSGYIWPELLAVHPDVKPIERTSMNSWEDAAFVKAVEATGRKKLIISALWTEVCLTFP ALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVPVTWQQVLLEYQRDWSRKETY DAVMDLVREHSGAYGMGVDYAYTMVHGAPERKA >gi|283548478|gb|GG730299.1| GENE 2258 2454827 - 2455729 869 300 aa, chain + ## HITS:1 COG:ECs2817 KEGG:ns NR:ns ## COG: ECs2817 COG0583 # Protein_GI_number: 15832071 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 299 8 306 316 304 50.0 2e-82 MRINLDVLLILDALDKQGSFAAAAESLFKTPAALSYMIQKLESDLNIELLDRSGHRAKFT DTGLMMLEKGRLLLSAAKDLEKQAVQLSSGWEKELAIALDESFPFATLLPIIDEFHALNK QTRLSFTHHTLAGSWEELTHNGADIILGAINEPPTSAAWSYKMLGTLDNVFVVAPEHPLA TAPDGLTNEQLCLHRAIVISDSARFCHPLQTNLMDEQAQIRVDDFHSKVMLLRAGIGCGF LPRHIASPWLATGELVEKTVISFRQKDVAYMAWRNSRDGLAQRWWRETLLANLEIARLYQ >gi|283548478|gb|GG730299.1| GENE 2259 2455723 - 2457540 1405 605 aa, chain - ## HITS:1 COG:ECs0453 KEGG:ns NR:ns ## COG: ECs0453 COG0366 # Protein_GI_number: 15829707 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 603 2 604 605 1088 86.0 0 MLNAWHLPVAPFVKQNKDQLTITLWLAGENSPQRVTLRAENDNEEISLSMHKRRSQPHPG VTAWRAAIDLACGQPRRRYSFKLLWPDRQLWFTPQGFSRFPPARLEQFAVDVPDNGPQWV ADQIFYQIFPDRFARSQSREAAQDNVYYHHAAGHEIVRREWDEPLTAQAGGSTFYGGDLD GISEKLPYLKTLGVTALYLNPVFTAPSVHKYDTEDYRHVDPQFGGDRALLRLRHATQRQG MRLILDGVFNHSGDSHPWFDRHNRGTDGACYNPDSPWRDWYHFSADGVALDWLGYASLPK LDFSSESLVNEIYRGEDSIVRHWLKAPWSMDGWRLDVVHMLGEAGGARNNLRHVAGITQA AKETQPAAYVVGEHFGDARQWLQADAEDAAMNYRGFTFPVWGFLANTDISYDPQSIDAQT CMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKSLLGKDVVRLPLAVVWLFTWPGVPCIY YGDEVGLDGNNDPFCRKPFPWQPEKQDANLLALYQRLAKLRHQSQALRHGGCQVIYAEDN VVVFVRALNRQRVLVAINRGHACEVVLPASPLLRVAQWQRKEGKGLLADDILTLPAISAS VWMGH >gi|283548478|gb|GG730299.1| GENE 2260 2457678 - 2459051 1723 457 aa, chain - ## HITS:1 COG:STM0400 KEGG:ns NR:ns ## COG: STM0400 COG1113 # Protein_GI_number: 16763780 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Salmonella typhimurium LT2 # 1 456 1 456 456 780 96.0 0 MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMR ALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPA VPHWIWVLSVVLIICAINLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQ PTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVP MRILVFYVGTLFVIMSIYPWNQVGTDGSPFVLTFQHMGITFAAGILNFVVLTASLSAINS DVFGVGRMLHGMAEQGSAPKMFAKTSRRGVPWVTVMVMTIALLFAVYLNYIMPENVFLVI ASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVTTTVVGLIFLVFIIALIG YHPDTRISLYVGFAWIALLLVGWVFKRRRERQLAEAQ >gi|283548478|gb|GG730299.1| GENE 2261 2459131 - 2460450 1485 439 aa, chain - ## HITS:1 COG:STM0399 KEGG:ns NR:ns ## COG: STM0399 COG1114 # Protein_GI_number: 16763779 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 439 1 439 439 716 95.0 0 MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV VALAKVGGGVDSLSTPIGKVAGLLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSAL PLFIYSVVYFAIVILVSLYPGKLLDTVGNFLAPLKILALVVLSVAAIVWPAGPISNAMEA YQTAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTESRLLTRYTVWAGLMAGVGLT LLYLALFRLGSDSAILVDQSANGAAILHAYVQHTFGGAGSFLLAALIFIACLVTAVGLTC ACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSHLIQISIPVLTAIYPPCIALVVLSFT RSWWHNSSRVIAPAMFISLIFGILDGIKASAIGGVLPAWTQRLPLAEQGLAWLMPTVVMV ILAIIWDRAAGRQVTSSAH >gi|283548478|gb|GG730299.1| GENE 2262 2460855 - 2462150 1121 431 aa, chain - ## HITS:1 COG:STM0398 KEGG:ns NR:ns ## COG: STM0398 COG0642 # Protein_GI_number: 16763778 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 431 1 431 431 806 90.0 0 MLERLSWKRLVLELILCCIPAFILSAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVD RSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGI FWCNGLAQQVLGLRWPDDNGQNILNLLRYPEFTQYLKTRDFSRPINLVLNTGRHLEIRVM PYTDKQLLMVARDVTQMHQLEGSRRNFFANASHELRTPLTVLQGYLEMMQEHPLEGTTRE KALHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEHEAQTLSQNNHT FTFDIDSHLSVRGNEDQLRSAISNLVYNAVNHTPAGTHIAVRWQHIASGAEFSVADNGPG IAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALHHHDSRLNIESTPGKGTRFSFV IPERLMAKSND >gi|283548478|gb|GG730299.1| GENE 2263 2462201 - 2462890 774 229 aa, chain - ## HITS:1 COG:STM0397 KEGG:ns NR:ns ## COG: STM0397 COG0745 # Protein_GI_number: 16763777 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 444 96.0 1e-125 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS GLQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL RRISPMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLL NHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFSTRF >gi|283548478|gb|GG730299.1| GENE 2264 2463081 - 2464283 1131 400 aa, chain + ## HITS:1 COG:ECs0448 KEGG:ns NR:ns ## COG: ECs0448 COG0420 # Protein_GI_number: 15829702 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 713 86.0 0 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQCHHVDAIIVAGDIFDTGSPPSYAR ELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNTTVIASAGHAPQMLSQRDG SPGAILCPVPFLRPRDIITSQAGLTGQEKQQHLLSAITDYYQQQYQDACTLRGDRNLPII ATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQVIGGTEHIRYCGS PIPLSFDECGKSKCVHLVSFADGKLSAVENLTVPVTQPLAVLKGDLAAITAQLEQWRGAQ QEPPVWLDIEITTDDYLHDMQRKIQALTEDLPVEVLLVRRSREQRERIMANERRETLSEL SVTEVFDRRLALEELEDAQRERLNQLFSTTLHTLAGEADA >gi|283548478|gb|GG730299.1| GENE 2265 2464280 - 2467429 3211 1049 aa, chain + ## HITS:1 COG:ZsbcC KEGG:ns NR:ns ## COG: ZsbcC COG0419 # Protein_GI_number: 15800123 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Escherichia coli O157:H7 EDL933 # 1 1047 1 1047 1047 1143 74.0 0 MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR LNTVSQSQNDLMTRDTAECLAEVEFEVRGEAYRAFWSQNRARNQPEGNLQAPRVELARCA DGKILADKVKDKLEMTAELTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE IYGHISAMVFEKHKAARTELEKRQAQASGVALLAAEQVQSLTESLQVLTDEEKQYLTSQQ AQQQHLNWLTRQNELQTDINRHQQALQAALQAQEDAQPQLAALSLAQPARALRPHWERIQ EQTATIARTRQKIQEVNTRLQSSLALRGRIRQQAQAQSSAMLAGQQTLTDWLSEHDRFRL WSSELAGWKALLAQQSEASAQLRQWQQLRENDTRKLNALALPTLTLSAQEVTEALAQHVQ RRPLRQRLSNLHGQIAPRQKQLAQLRVSLEQRQQELTQHNAALAEKRQRYKEKNQQLADV RTICEQELRIKDLESQRALLQSGMPCPLCGSTSHPAIERYQTLELSVNQARREALEKEVK TLADEGSTLRGQLEAITQQLQRDEREAQTLSQEEQALTQEWQTVIASLNVTLQPQDDIAP WLAAQEEHEQQLHQLSLRHTLQAQITAHTEQITLLQQHIDQRQTTLAAELTRHGLSLPAE GETTAWLNERANEAQMWQQRQNELTELQARIAQLTPLLETLPETEALSENSEDLSLENWR QVHDDCLSLQGQWQTLQQQEAQDVQRAAEIQAQFDAALQASVFDDLNTFVDALLDEETFN RLEQLKQSLESQRQQAQTLLNQARQALAAHQQQQPTGVDLTLSAQHLRDALAQLTQQLRD NTTRQGEIRQQLRQDAENRQQQQALMQEIEQVTQQVEDWGYLNALIGSKEGDKFRKFAQG LTLDNLVWLANNQLTRLHGRYLLQRKASEALELEVVDTWQADAVRDTRTLSGGESFLVSL ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATGKTIGVISHVEAMK ERIPVQIKVKKINGLGYSKLDKVFAVESA >gi|283548478|gb|GG730299.1| GENE 2266 2467594 - 2468763 1051 389 aa, chain + ## HITS:1 COG:ECs0446 KEGG:ns NR:ns ## COG: ECs0446 COG2814 # Protein_GI_number: 15829700 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli O157:H7 # 1 380 1 380 394 540 87.0 1e-153 MKKVVFSLALGTFGLGMAEFGIMGVLTELARDVGISIPAAGHMISFYAFGVVLGAPIIAL FSSRFSLKHILLFLVTLCVIGNAIFTLSSSYFMLAVGRLVSGFPHGAFFGVGAIILSKLA RPGKVTAAVAGMVSGMTVANLVGIPVGTWLSQEFSWRYTFLLIAVFNIAVIVSVAFWVPN ISDEAKGKLSEQFHFLKSPAPWLIFSATMFGNAGVFAWFSYVKPYMMYISGFSETLMTFI MMLVGLGMVLGNLLSGRLSGRYTPLRIAVVTDFVIVLALLLLFAFGGIKAASLTFAFICC AGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGFAYNYVTLP AALLSFSAMSSLLIYGYLKRGVQQVARAT >gi|283548478|gb|GG730299.1| GENE 2267 2468770 - 2469678 278 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 4 298 7 312 323 111 30 1e-22 MRIGIDLGGTKTEVIALGDAGEQLFRHRLPTPRDDYRQTIETIAALVEMAEKSTGQSGTV GMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSTRLNREVRLANDANCLAVSEAVDGAAA GAQTVFAVIIGTGCGAGVALNGRAHIGGNGTAGEWGHNPLPWMDEDELRFRQEVPCYCGK QGCIETFISGTGFATDYQRLSGKPLKGSEIIDQVNARDTLAEQALSRYERRLAKSLAHVV NILDPDVIVLGGGMSNVDRLYQNVPNLIKQFVFGGECETPLRKALHGDSSGVRGAAWLWP QT >gi|283548478|gb|GG730299.1| GENE 2268 2469770 - 2470681 1052 303 aa, chain + ## HITS:1 COG:STM0392 KEGG:ns NR:ns ## COG: STM0392 COG2974 # Protein_GI_number: 16763772 # Func_class: L Replication, recombination and repair # Function: DNA recombination-dependent growth factor C # Organism: Salmonella typhimurium LT2 # 1 303 1 303 303 553 95.0 1e-157 MLWFKNLMVYRLSRDVSLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTA NGQIIICARKEEKILPSPVIKQALEAKIFKLEAEQGRKLKKTEKDSLKDEVLHSLLPRAF SRFSQTMMWIDTVNDLIMVDCASAKKAEDTLALLRKSLGSLPVVPLTMENPIELTLTEWV RSGTTAQGFQLLDEAELKAILEDGGVIRAKKQDLVCDEIAVHIEAGKLVTKLALDWQQRI QFVMCDDGSVKRLKFSDELRDQNEDIDREDYAQRFDADFILMTGELAALIKSLVEGLGGE AQR >gi|283548478|gb|GG730299.1| GENE 2269 2470730 - 2471014 314 94 aa, chain - ## HITS:1 COG:STM0391 KEGG:ns NR:ns ## COG: STM0391 COG3123 # Protein_GI_number: 16763771 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 94 1 94 94 157 90.0 4e-39 MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAAPEEMTVISGALNVLLPGET EWKVYAAGDVFNVPGSSEFHLQVAEPTSYLCRYL >gi|283548478|gb|GG730299.1| GENE 2270 2471086 - 2471763 825 225 aa, chain - ## HITS:1 COG:no KEGG:STM0390 NR:ns ## KEGG: STM0390 # Name: aroM # Def: hypothetical protein # Organism: S.typhimurium # Pathway: not_defined # 1 224 1 224 225 335 83.0 8e-91 MGTSLAILTIGVVPMCEVLPLLTEYIDEQHITHHSLLGQMRREDVMAEYGVSAGDEPLLT LLSDHQLAHVSRQKVERSLQSIVEVLDNQGFDVILLMSTASIARLTARNSILLEPLRIIP PLVASIVDGHQVGVIVPVAELLKAQTQKWQVLQTPPVYAVANPIAGSEQQLIDAGQELLA QGADVIMLDCLGFNQRHRDLLQKSLDVPVLLSNVLIARLASELLA >gi|283548478|gb|GG730299.1| GENE 2271 2472011 - 2472202 101 63 aa, chain - ## HITS:1 COG:no KEGG:CKO_02782 NR:ns ## KEGG: CKO_02782 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 63 1 63 63 84 88.0 2e-15 MPTKPPYPRQATIVTVEKGTPGQTVTWYQLRADHPEPNSLISEHPSAQEAMDAKKRYEDP EKT >gi|283548478|gb|GG730299.1| GENE 2272 2472229 - 2472774 517 181 aa, chain - ## HITS:1 COG:STM0388 KEGG:ns NR:ns ## COG: STM0388 COG0703 # Protein_GI_number: 16763768 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Salmonella typhimurium LT2 # 1 181 1 181 181 264 74.0 8e-71 MTQPLFLVGPRGCGKTTTGMALAKAIDYQFVDTDRWLQSHVQMTVAEIVEREGWEGFRAQ ETAALQAVTAPATVVATGGGIILTEFNRRYMRNHGVVIYLSAPVSVLVDRLEATPEEGLR PTLTGKPLTEEVEEVLAQRDVLYREAAHYIVDATNAPSQVVEDILGILSQAAPRLQGGVY T >gi|283548478|gb|GG730299.1| GENE 2273 2472960 - 2473415 337 151 aa, chain - ## HITS:1 COG:ECs0436 KEGG:ns NR:ns ## COG: ECs0436 COG1671 # Protein_GI_number: 15829691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 151 41 191 192 269 91.0 2e-72 MTIWVDADACPNVIKDILYRASERMQMPLILVANQNLRVPPSRFIRTLRVPAGFDVADNE IVRQCSAGDLVITADIPLAAEAIEKGAAALNPRGERYTEATIRERLMMRDFMDTLRASGI QTGGPDSLSPRDRQHFAAELDKWWLEVQRRK >gi|283548478|gb|GG730299.1| GENE 2274 2473689 - 2474498 917 269 aa, chain + ## HITS:1 COG:STM0386 KEGG:ns NR:ns ## COG: STM0386 COG0345 # Protein_GI_number: 16763766 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 470 94.0 1e-132 MDKKIGFIGCGNMGKAILGGMIASGQVLPGQIWVYTPSPDKVAALRDQYGINAAQSAQEV AQIADIVFGAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMP NTPSLVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEAMIHPVVGVSGSAPAYVF MFIEAMADAAVQGGMPRAQAYKFAAQAVMGSAKMVLETGKHPGELKDMVCSPGGTTIEAV RVLEERGFRSSVIEAMVKCMEQSEKLSRS >gi|283548478|gb|GG730299.1| GENE 2275 2474516 - 2475478 723 320 aa, chain - ## HITS:1 COG:STM0385_2 KEGG:ns NR:ns ## COG: STM0385_2 COG2199 # Protein_GI_number: 16763765 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Salmonella typhimurium LT2 # 150 320 1 171 171 311 85.0 1e-84 MFFPVASVLVSQPITGGWWLLLVGWAFVWPHLAWQLASKADDPLHSELTNLKVDAILAGM WIGIMGANLLPSTALLIIICINLMGAGGMRVFLAGAVLMAVACLVTLQLANIPVAVNSSQ LNVALSLPVLVIYPLLFAWVSYQAITRLAEHKRRLQVMSTRDGMTGVYNRRHWELLLRNE FDNCRRYQRDATLLIIDIDHFKSINDTWGHDVGDQAIVALTRQLQMTLRGSDVIGRFGGD EFAVIMCGTPATSAIAAMSRVHERLSQLRLSCAPQVALRISVGVAPLTSETEHYREWLKS ADMALYKAKNSGRNRTEAAA >gi|283548478|gb|GG730299.1| GENE 2276 2475722 - 2476042 249 106 aa, chain - ## HITS:1 COG:no KEGG:G2583_0492 NR:ns ## KEGG: G2583_0492 # Name: not_defined # Def: phosphate starvation-inducible protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 106 7 112 112 150 90.0 2e-35 MKITLLMTLLFGLIFLTTVGAAEKTLTPQQQRMTTCNQQATAQSLKGDARKTYMSDCLKN SKSAPEEKSLTPQQQKMRECNVKATEQSLKGDDRNKFMSACLKKSA >gi|283548478|gb|GG730299.1| GENE 2277 2476140 - 2477555 1411 471 aa, chain - ## HITS:1 COG:ECs0433 KEGG:ns NR:ns ## COG: ECs0433 COG1785 # Protein_GI_number: 15829687 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Escherichia coli O157:H7 # 1 471 24 494 494 799 90.0 0 MKQSALAIALLPLLFTPVINAETSTVAVMDNRAAHGDITTPGGARRLSADQTAALRESLN DKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALDKKTGKPDY VTDSAASATAWTTGVKTYNGALGVDIHEKDHATILEMAKAAGLATGNVSTAELQDATPAA LVAHVTSRKCYGPSVTAEKCPTNALEKGGKGSITEQLLNARADVTLGGGAKTFAETAAAG EWQGKTLREQALARGYQMVSDAATLAAITEANQDKPLLGLFSDGNMPVRWEGPKASYHGN LDKPVVTCTPNPKRDNTVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQ IGETVDLDEAVQRALAFAKKDGNTLVVVTADHAHASQIVAPDTKAPGLTQALNTKDGAVM VISYGNSEEESQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK >gi|283548478|gb|GG730299.1| GENE 2278 2477655 - 2477900 293 81 aa, chain - ## HITS:1 COG:no KEGG:ROD_04261 NR:ns ## KEGG: ROD_04261 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 59 20 78 105 65 66.0 1e-09 MKNLVTELLLKLAQKEEESQELAAQVETLEQVITEMLRNMAWHERQIQLRQIEAALAGVN RVPAFLTTLHNAGESVSKRFE >gi|283548478|gb|GG730299.1| GENE 2279 2478206 - 2479402 1040 398 aa, chain - ## HITS:1 COG:STM0382 KEGG:ns NR:ns ## COG: STM0382 COG0477 # Protein_GI_number: 16763762 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 398 1 398 403 627 93.0 1e-179 MESWRVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEALSMWSGLTYSVTFLISA IVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVWQLFLLRGVMGLTSGYIPNAM ALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFIADHIGLRAVFCITAALLVVSFLV TLFLIKEGVRPTIKKSERLSGKAVFASLPYPALVISLFITTMVIQLCNGSIGPILALFIK SMVPDSSNIAFLCGLIASVPGLSALISAPRLGKLGDRIGTERILMATLIFAVVLFFAMSW VTTPLQLGILRFLLGFADGAMLPAVQTLLVKYSSDQITGRIFGYNQSFMYLGNVAGPLMG ATVSAMAGFRWVFIATASIVLINIWQLAIALRRRRRAR >gi|283548478|gb|GG730299.1| GENE 2280 2479704 - 2480798 1306 364 aa, chain + ## HITS:1 COG:ECs0431 KEGG:ns NR:ns ## COG: ECs0431 COG1181 # Protein_GI_number: 15829685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli O157:H7 # 1 364 1 364 364 687 93.0 0 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLN SDDPAHIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML RVANLPFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGL PLFVKPANQGSSVGVSKVTSEAQYNQAVALAFEFDHKVVVEQGIKGREIECAVLGNDRPQ ASTCGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMAR VDVFLTAENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALERHAADSAL KTSM >gi|283548478|gb|GG730299.1| GENE 2281 2480824 - 2481042 337 72 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_0376 NR:ns ## KEGG: ECIAI1_0376 # Name: yaiZ # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 72 45 114 114 127 90.0 2e-28 MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAQGWQTYAVGLVTWVISFWLAGLIIR RRVDEEEAKDAQ >gi|283548478|gb|GG730299.1| GENE 2282 2481306 - 2481629 349 107 aa, chain + ## HITS:1 COG:no KEGG:ROD_04201 NR:ns ## KEGG: ROD_04201 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 104 1 102 102 176 81.0 3e-43 MADFTLSKSLFKGKHRDTSSLPGNIAYAVFVLFCFWAGAQILNLLAHAPGIYEQLMQLQM QETGRPRVEIGLGVGTLFGLIPFLLGSLILGAVATIMHWRRRHHKDD >gi|283548478|gb|GG730299.1| GENE 2283 2481614 - 2482717 993 367 aa, chain - ## HITS:1 COG:no KEGG:CKO_02800 NR:ns ## KEGG: CKO_02800 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 362 1 362 364 652 89.0 0 MSTVSRLYPWSGLAALVLVGCSSQPAQPLKKGEKAVDVASVVRQKMPASVKDRDAWAQDL AKTFESQKLVPTVENICSVLAVAQQESNYQADPAVPGLSKIAWKEIDRRAERMHIPLFVV HTALKINSPTGKSYSERLDTVKTEKQLSAIFDDFINMVPMGQTLFGSLNPVHTGGPMQVS IAFAEQHASGYPWKMAGTVRQEVFSRRGGLWFGTYHLLNYPANYSAPIFRFADFNAGWYA SRNAAFQNAVSKASGVKLALDGDLILYGSSEPGKTELAVRKLAGKLGMSESEIHRQLQKG DSLAFEETALYEKVYKLAEAKSGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDDRRAK CMAQSSL >gi|283548478|gb|GG730299.1| GENE 2284 2482732 - 2483952 1377 406 aa, chain - ## HITS:1 COG:STM0376 KEGG:ns NR:ns ## COG: STM0376 COG1133 # Protein_GI_number: 16763756 # Func_class: I Lipid transport and metabolism # Function: ABC-type long-chain fatty acid transport system, fused permease and ATPase components # Organism: Salmonella typhimurium LT2 # 1 406 1 406 406 721 91.0 0 MFKSFFPKPGPFFISAFIWALVAVVFWQAGGGTWVAHITGASQDVPISAARFWSLDYLIF YAYYILCVGVFALFWFIYSPHRWQYWSILGTSLIIFVTWFLVEVGVAVNAWYAPFYDLIQ TALSAPHKVKIEQFYHEVGIFLGIALIAVVIGVMNNFFVSHYVFRWRTAMNEHYMAHWQH LRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPDLPIIGHVP YGLVIAAIVWSLMGTGLLAIVGIKLPGLEFKNQRVEAAYRKELVYGEDDATRATPPTVRE LFHAVRQNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG QVRGSFQYLINSWTTLVELMSIYKRLRSFERELDGQDIQEVTHTLS >gi|283548478|gb|GG730299.1| GENE 2285 2484335 - 2485492 998 385 aa, chain + ## HITS:1 COG:ECs0426 KEGG:ns NR:ns ## COG: ECs0426 COG1680 # Protein_GI_number: 15829680 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli O157:H7 # 1 385 1 385 385 703 91.0 0 MKRSLLFSAALCAASLTSVQAAQPITDPVFASDIVDRYADHIFYGSGATGMALVVIDGNQ RVFRSFGETRPGNNVHPQLDSVIRIASITKLMTSEVLVKLLDQGTVKLNDPLSKYAPPGA RVPTYQGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWSYLSTATLKVAPGSQ ASYSNLAFDLLADALGTAAGKPYPQLFEEKITRPLGMKDTTFTPSPDQCRRLMVAEKGAS PCNNTLAAMGSGGVYSTPGDMMRWMQQYLSSDFYHRSQQADRMQTLIYQRTQLTKVIGMD VPGKADALGLGWVYMAPKNGRPGIIQKTGGGGGFITYMAMIPQQNVGAFVVVTRSPLTRF TNMSDGINDLVAELSGNKPQVIPAS >gi|283548478|gb|GG730299.1| GENE 2286 2485494 - 2486117 202 207 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_0411 NR:ns ## KEGG: ECUMN_0411 # Name: yaiV # Def: putative DNA-binding transcriptional regulator # Organism: E.coli_UMN026 # Pathway: not_defined # 1 207 16 222 222 333 75.0 3e-90 MLSTNKPLPEFSKLDKCLSKYGKHFECDNDKEIIYSSDINSDDTFIISSGVVSLRRGENV LVGIAQAPFILGLSDGVMKTDIQYRLMTESYCTGYHLPALQTINIIEQCQLWREAFCWLA WQNRMLEMRDLQLIGNNSYDQIRATLISMTKWDEGLRSRIGVMNYIHQRTRISRSVVAEV LAALRKGGYIEMNKGKLVSINRLPFEY >gi|283548478|gb|GG730299.1| GENE 2287 2486208 - 2489129 3124 973 aa, chain - ## HITS:1 COG:ECs0424_2 KEGG:ns NR:ns ## COG: ECs0424_2 COG3468 # Protein_GI_number: 15829678 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 509 973 3 471 471 626 85.0 1e-179 MHTWKKKLVVSQLALACTLAITSQANASTDISGTSYTTFTHYNDASYADGVYYDGYVGWN NYDADSIYNGDIYPVINNATVNGVISTYYLDDGLATNSNTNSLTIKNSTIHGMVTSECMT TDCTNRTGTDYYYDRLAMSVINSTIDDNYEHYTYNGSYNDAVDSHVVDVYNMGTAITLDQ EVDLSITNNSHVAGITLTQGYEWEDIDDNTVSTGVNSGEVFNNTITVADSTVTSGSWSDE GTSGWFGNTSNASDYSGSYTADDIALAVIAHPDADNAMQTTATFDNSTLMGDVLFSSNFD ENFFPNGADTYRDTDADLDTNGWDGTDRLDLTLNNGSKWVGAAMSVHQTDTDGDGVYDSY GVGTEATATLIDIAANSLWPDSTYGIDSDSSAYGEDGHVVGNAVYQSGLFNVTLNGASQW DTTKTSLIDTLSINSGSVVNVGDSSLVSDSISLTGASALNINEDGHVATDTLSIDNSTVT IADDVAAGWSVGSAALYANTINLTNNGVLDVGNSTGNALQVDTLNLTSYTDAYNNVNAGV FDINSSNYVLNADLTNDRTNDKTQANYGYGVIAMNSDGHLTINGNGDSDTSYDQSEVDNY GDHVAAATGNYKVRIDNATGAGSIADYKGNELIYVNDTNSTATFSAANKADLGAYTYQAQ QQGNTVVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLVDNGGAWVSYF GGSFDADNGTINYDQDVNGIMVGVDSKIDGNNAKWIVGAAAGFAKGDLSDRSGQVDQDSQ TAYIYSSARFANNIFVDGNLSYSHFNNDLSASMSNGQYVDGSTSADAWGFGLKLGYDLKL GDAGYVTPYGSVSGLFQSGDDYKLSNDMKVDGQSYDSMRYELGVDAGYTFAYSDDQALTP YFKLAYVYDDSNNDSNVNGDSIDNGVEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVD QDWSANVGVKYTW >gi|283548478|gb|GG730299.1| GENE 2288 2489635 - 2490609 1148 324 aa, chain + ## HITS:1 COG:STM0372 KEGG:ns NR:ns ## COG: STM0372 COG0113 # Protein_GI_number: 16763752 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Salmonella typhimurium LT2 # 1 324 1 324 324 603 96.0 1e-172 MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEELDDFKAIDAMPGVMRIPEKH LAREIERIANAGIRSVMTFGISHHTDDTGSDAWKEDGLVARMSRICKQTVPEMIVMSDTC FCEYTSHGHCGVLCDHGVDNDLTLANLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALD AAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKTYQMNPMNRREAIRESLLDEAQG ADCLMVKPAGAYLDILRDIRERTELPIGAYQVSGEYAMIKFAAMAGAIDEEKVVLESLGS IKRAGADLIFSYFALDLAEKKILR >gi|283548478|gb|GG730299.1| GENE 2289 2490689 - 2491540 880 283 aa, chain - ## HITS:1 COG:tauD KEGG:ns NR:ns ## COG: tauD COG2175 # Protein_GI_number: 16128353 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Probable taurine catabolism dioxygenase # Organism: Escherichia coli K12 # 1 283 1 283 283 535 93.0 1e-152 MSERLNITPLGPYIGAQITGADLARPLSDNQFEQLYHAVLRHQVVFLREQVITPQQQRAL ALRFGDLHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIDTPPAGAILAAKELP STGGDTLWTSGIAAYEALSSPFRQLLSGLRAEHDFRKSFQEYKYRQTPEEHQRWLDAVAK HPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVTEKESEALLSFLFAHITKPEFQVRWRW QPNDVAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRAG >gi|283548478|gb|GG730299.1| GENE 2290 2491537 - 2492367 1130 276 aa, chain - ## HITS:1 COG:tauC KEGG:ns NR:ns ## COG: tauC COG0600 # Protein_GI_number: 16128352 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component # Organism: Escherichia coli K12 # 1 276 1 275 275 391 90.0 1e-109 MSVVINDKPRRPRAQYWRWPFSRQITLSLGTLAVILALWWMVAALQLISPLFLPPPGQVL QKLLTIAGPQGFMDATLWQHLAASLTRIVVALLAAVLLGIPVGIAMGLSPTIRGILDPII ELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSL GASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLAT DVVLAGIAVIAVIAFILELGLRALQRRLTPWHGEVQ >gi|283548478|gb|GG730299.1| GENE 2291 2492364 - 2493131 279 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 205 1 215 245 112 32 1e-22 MLQISHLAASYGGKAVLEDINLTLDSGELLVVLGPSGCGKTTLLNLIAGFVPYQYGSITL SGKKVDGPGADRGVVFQNEGLLPWRNVQDNVTFGLQLAGMEKPQRQRIAQDMLQKVGLEG AGKRFIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWHETGK QVLLITHDIEEAVFMATELVLLSPGPGRVLERLPLNFARRFVAGEPSRSIKSDPQFIAMR EYVLSRVFEQREAFS >gi|283548478|gb|GG730299.1| GENE 2292 2493144 - 2494106 1232 320 aa, chain - ## HITS:1 COG:tauA KEGG:ns NR:ns ## COG: tauA COG4521 # Protein_GI_number: 16128350 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type taurine transport system, periplasmic component # Organism: Escherichia coli K12 # 1 320 20 339 339 569 97.0 1e-162 MANSSRNALLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDS GASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKNISKPEDL IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAV NALEKDGKVLTDSSQVGEWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANPD EWLKQPENISKLARLSGVPEADVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLKEQ GKVPAVATDYSQYVTDRFVQ >gi|283548478|gb|GG730299.1| GENE 2293 2494435 - 2495064 767 209 aa, chain + ## HITS:1 COG:ECs0418 KEGG:ns NR:ns ## COG: ECs0418 COG2197 # Protein_GI_number: 15829672 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 14 209 14 209 209 350 89.0 9e-97 MIHVVLVDDHVVVRSGFAQLLSLEDDLNVTGQFSSAAEAWPALLHDDVNVAVMDIAMPDE NGLSLLKRLRAQKPGFRAIILSIYDSPTFVQSALDAGASGYLTKRCGPEELVQAVRSVGM GGHYLCADALRALRGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFKLDLSHKTVHVH RANVLGKLQCHSTIDLVHFALDHQLLTGH >gi|283548478|gb|GG730299.1| GENE 2294 2495064 - 2496605 1362 513 aa, chain + ## HITS:1 COG:ECs0417 KEGG:ns NR:ns ## COG: ECs0417 COG3851 # Protein_GI_number: 15829671 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, glucose-6-phosphate specific # Organism: Escherichia coli O157:H7 # 1 512 1 512 513 776 82.0 0 MSRSLRHWVISLFILLAWGSGWLMLWTLGFYLTHNGQQSALFLPHGVYLALLILLSRRYW PALVLPPVLMLFWLHSEQLLNGYTLLAAPFISLIPASIGQSYWHRFPLYWQRLTLLLTAV TVTSLLNTALLSPFIESPATLIGLASFTGGVLLTPFVYLLYEFLRQQHRYHLLGLDTTNP PLRASLIIWCSLFFIIGIGTQMVLSPDIERLLLIVVFLPNVVMAWKFGWQGGVLSGLLGS MMITIARQIGVGFSNLLELEIFLATQALLGIGLGIAISRQQHLAQNLHHYRQRLEAELTA RRALTEQLIRTEENTRKNLARELHDEIGQNITAIQIQSQLVIRAPGREQTLEAANQINDL ARRIHHSTRQLLRQLRPPALDELSFKDALHHLVNEFAFAERGICCRFDYQLENTPENETV RFTLYRLLQELLNNVCKHADASEVSITLRQREQRLSLEVDDNGVGILPDKIPGFGIHGMR ERVSALGGELTLESNNGTRVIVNLPTNLQQTSR >gi|283548478|gb|GG730299.1| GENE 2295 2496691 - 2496996 361 101 aa, chain + ## HITS:1 COG:ECs0416 KEGG:ns NR:ns ## COG: ECs0416 COG2271 # Protein_GI_number: 15829670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 3 101 6 104 434 185 91.0 1e-47 MHARETDQQYRTLRPRLLMCMVIGYAAFYLTRKSVNYVLPALQTDLGLDKGDIGLLGSLF YLTYGLSKFTAGLWHDSHGQRAFMGIGLFATGVLNVVFAFG >gi|283548478|gb|GG730299.1| GENE 2296 2497129 - 2497986 956 285 aa, chain + ## HITS:1 COG:ECs0416 KEGG:ns NR:ns ## COG: ECs0416 COG2271 # Protein_GI_number: 15829670 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 1 285 150 434 434 442 94.0 1e-124 MSINIGGAIIPLISAFAAHWWGWQAAMLAPGIISMALGIWLTLQLKGTPREEGLPTVGEW RHDPLELRQEQQSPPMGLWQMLRATMLKNPMIWLLGVSYVLVYLIRIALNDWGNIWLTES HGVNLLSANATVMLFEVGGLLGALFAGWGSDLLFSGQRAPMILLFTLGLMVSVAALWLAP VHHYALLAVCFFTVGFFVFGPQMLIGLAAVECGHKAAAGSITGFLGLFAYLGAALAGWPL SLVIERYGWSGMFSLLSVAAVFMGLLLMPLLIAGITPSLSQRIKQ >gi|283548478|gb|GG730299.1| GENE 2297 2497839 - 2499014 892 391 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167854980|ref|ZP_02477755.1| 50S ribosomal protein L13 [Haemophilus parasuis 29755] # 45 389 2 344 346 348 47 8e-94 MAAVAGHRTLRLVGNVQFALGCRCFYGFIADAIAHCGHYPFSQSKDKTMKLTLTSTLIAS ALALAAFSSAAQAQGRLVVYCSATNEMCETETKAFGDKYDVKTSFIRNGSGSTLAKVDAE KKNPQADVWYGGTLDPQSQAGEMGLLQPYKSPNLTQIMEKFRDPAKVKGNLSSAVYVGIL GFGVNTQRLKEKNLPVPKCWKDLTKPEYKGEIQIADPQSSGTAYTALATFAQLWGEDQAF DYLKQLNANVSQYTKSGIAPARNAARGETAIGIGFLHDYSLEKEQGAQLELISPCEGTGY EIGGVSILKGARNLDNAKLFVDWVLSKDAQELAWKKGKSYQILTNTTAETSPNSLKLDDL KLINYDMDKYGSTDVRKALINKWVSEVKMGK >gi|283548478|gb|GG730299.1| GENE 2298 2499084 - 2501162 2688 692 aa, chain + ## HITS:1 COG:ECs0414 KEGG:ns NR:ns ## COG: ECs0414 COG1178 # Protein_GI_number: 15829668 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Escherichia coli O157:H7 # 1 692 1 692 692 1138 94.0 0 MSHTLALHPVKKRDAIFLWVLLGWLAFALLPSWSLDYGLLESTREEILAAYGWSQFNISW LWYLLPSLLLVRPFHEARREQRSRHYLDAGWAFFCMAFIVASATLEGRGLGYATIVLFVA LGAIMTLALTRLEWLGGDRFVIGSLTAIVALIGIFIVWPSIAIFIPMFTNDAGEFAPLAF MNVLSQAHIIQVILNSIMLSIAVGVGCTFFGMVLAIYTTRIARRSAIIGRIFSILPIVTP PFVVGLGVTLMMGRSGYITEFMVDWFGLTNTNWLYGFTGIWLAQVLAFTPMAFMILDGAI KTIHPSLEEASYTLRASRWQTFNGVFVPLLKPALANAFLIVVVQSLADFSNPLVLGGNFD VLATQIYFYITGSQLDYQAASTLGAFLLLFSLLVFCVQYMWIGKRSYVTVSGKSYRGDVQ PLPVTLVWSVIAILAVWIAFNALLYGSIFYGSFTVNWGVDYTLTLANFTKLFGQGMSDGA WPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYI LAFNSAPVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTIT HILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYG SILIVVMLAIIFIFDWLIGESRTSRSKAKNQA >gi|283548478|gb|GG730299.1| GENE 2299 2501174 - 2502220 1247 348 aa, chain + ## HITS:1 COG:afuC KEGG:ns NR:ns ## COG: afuC COG3842 # Protein_GI_number: 16128247 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Escherichia coli K12 # 1 346 5 350 352 676 95.0 0 MSQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSE GQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVSRSEVKTRVKEA LAMVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIR ELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYRQPASRFMASFMGDA NLFPAAFSEDFVDIYGYRLPKPLHFAVQGEGTVGVRPEAITLSDRGEESQRCAIRHVAYM GPQYEVTVEWHGQEILLQVNATRLQPDVGEQYYLEIHPYGMFVLADTV >gi|283548478|gb|GG730299.1| GENE 2300 2502310 - 2503242 1126 310 aa, chain - ## HITS:1 COG:yagD KEGG:ns NR:ns ## COG: yagD COG2040 # Protein_GI_number: 16128246 # Func_class: E Amino acid transport and metabolism # Function: Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) # Organism: Escherichia coli K12 # 1 309 1 309 310 551 93.0 1e-157 MSQHNPLRALLEKQDFLLLDGAMATELEARGCNLADSLWSAKVLVENPQLIREVHLDYYR AGAQCAITASYQATPAGLAARGLDEAQSKALIGKSVELARKAREAYLAENPQAGTLLVAG SVGPYGAYLADGSEYRGDYQRSVGALQAFHRPRVEALLDAGADLLACETLPNFTEIGALA ELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALEKTTAALQ HLHGLTALPLVVYPNSGEQYDAASKTWHHHGEHCAHLADYLPQWRAAGARLIGGCCRTTP KDIAELNAQR >gi|283548478|gb|GG730299.1| GENE 2301 2503366 - 2504577 1694 403 aa, chain - ## HITS:1 COG:mhpT KEGG:ns NR:ns ## COG: mhpT COG0477 # Protein_GI_number: 16128338 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 11 396 28 412 418 510 90.0 1e-144 MTTRTPASRRLTLTVGLCFFVALMEGLDLQAAGIAAVGIAQAFALDKMQMGWIFSAGILG LLPGALVGGMLADRYGRKRILIGSVALFGLFSLATAISWDFSSLVFARLMTGVGLGAALP NLIALTSEAAGPRFRGTAVSLMYCGVPIGAALAAALGFSGLASAWQTVFWVGGVIPLLLV PLLMRWLPESQVYAQQTQVTAAPLRALFAPATVTATLLLWLCYFFTLLVVYMLINWLPML LVEQGFRPSQAAGVMFALQIGAASGTLILGALMDKLRPVVMSLLIYTGMLASLLALGTVS TFSGMLMAGFVAGMFATGGQSVLYALAPLFYSTQIRATGVGTAVAVGRLGAMSGPLLAGK MLALGTGTVGVMAASAPGILLAGLAVFILMSRKSQMTVQASGT >gi|283548478|gb|GG730299.1| GENE 2302 2504646 - 2505659 1527 337 aa, chain - ## HITS:1 COG:mhpE KEGG:ns NR:ns ## COG: mhpE COG0119 # Protein_GI_number: 16128337 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli K12 # 1 337 1 337 337 610 97.0 1e-175 MNGKKLYISDVTLRDGMHAIRHQYSLENVRQIAKALDDARVDSIEVAHGDGLQGSSFNYG FGAHSDLEWIEAAADVVQHAKIATLLLPGIGTIHDLKNAYQAGARVVRVATHCTEADVSA QHIQYARELGMDTVGFLMMSHMTTPENLAQQAKLMENYGATCIYVVDSGGAMNMSDIRAR FRALKAVLKPETETGMHAHHNLSLGVANSIAAVEEGCDRIDASLAGMGAGAGNAPLEVFI AAADKLGWQHGTDLYALMDAADDLVRPLQDRPVRVDRETLALGYAGVYSSFLRHCEVAAA RYGLSAVDILVELGKRRMVGGQEDMIVDVALDLRNGK >gi|283548478|gb|GG730299.1| GENE 2303 2505656 - 2506606 1145 316 aa, chain - ## HITS:1 COG:mhpF KEGG:ns NR:ns ## COG: mhpF COG4569 # Protein_GI_number: 16128336 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acetaldehyde dehydrogenase (acetylating) # Organism: Escherichia coli K12 # 1 316 1 316 316 532 93.0 1e-151 MSKRKVAIIGSGNIGTDLMIKILRHGVHLEMAVMVGIDPESDGLARARRMGVATTHEGVT GLMAMPEFADIDIVFDATSAGAHVKNDAALRAVKPGIRLIDLTPAAIGPYCVPVVNLAAN VDQQNVNMVTCGGQATIPMVAAVSRVAKVHYAEIIASIASKSAGPGTRANIDEFTETTSK AIEVVGGAEKGKAIIVLNPAEPPLMMRDTVYVLSEAASQVEIEASINEMAAAVQAYVPGY RLKQRVQFEVIPQDKPVNLPGIGQFSGLKTAVYLEVEGAAHYLPAYAGNLDIMTSSALAT AEKMAQSLARQAGEAA >gi|283548478|gb|GG730299.1| GENE 2304 2506603 - 2507412 946 269 aa, chain - ## HITS:1 COG:mhpD KEGG:ns NR:ns ## COG: mhpD COG3971 # Protein_GI_number: 16128335 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Escherichia coli K12 # 1 269 3 271 271 486 89.0 1e-137 MTNLNLEQLAADLRQAEENGEAIAPLRELIGVDNADAAYAIQRINVQYDVARGRRVVGRK VGLTHPKVQQQLGVDQPDFGTLFADMCYGDNDTIPFSRVLQPRIEAEIALVLNRDLPNAD TTFDELYNAIEWVLPALEVVGSRIRDWSIKFVDTVADNASCGVYVVGGPAQRPAGLDLKN CAMKMTRNNEEVSSGRGSECLGHPINAAVWLARKMASLGEPLRAGDIILTGALGPMVAVN AGDRFAAHIDGIGSVAVTFSAAVTKGSQS >gi|283548478|gb|GG730299.1| GENE 2305 2507422 - 2508288 1098 288 aa, chain - ## HITS:1 COG:mhpC KEGG:ns NR:ns ## COG: mhpC COG0596 # Protein_GI_number: 16128334 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 288 22 309 309 571 92.0 1e-163 MTYQPQTEAATSRFLEVQEAGETLRVHFNDCGQGEETVVLLHGSGPGATGWANFSRNIDP LVEAGYRVILLDCPGWGKSDGIVNRGSRSDLNARILKSVVDRLDIQKIHLLGNSMGGHSA VAFTLSWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYREPTIENLKLMMEIFVFD TSDLTEALFEARLNNMLSRRDHLENFVQSLEANPKQFPDFSPRLGEIKAQTLIVWGRNDR FVPMDAGLRLLSGITGSELHIYRDCGHWAQWEHADAFNQLVLNFLARP >gi|283548478|gb|GG730299.1| GENE 2306 2508317 - 2509261 943 314 aa, chain - ## HITS:1 COG:no KEGG:SSON_0295 NR:ns ## KEGG: SSON_0295 # Name: mhpB # Def: 3-(2,3-dihydroxyphenyl)propionate dioxygenase (EC:1.13.11.16) # Organism: S.sonnei # Pathway: Phenylalanine metabolism [PATH:ssn00360]; Microbial metabolism in diverse environments [PATH:ssn01120] # 1 314 1 314 314 603 93.0 1e-171 MHAYLHCLSHSPLVGYVDPAQAVLDEVNGVIASARARIAAFEPELVVLFAPDHYNGFFYD VMPPFCLGVGATAIGDFGSAAGELPVPTDLAEACAHAVMKSGIDLAVSYNMQVDHGFAQP LEFLLGGLDKVPVLPVFINGVATPLPGFQRTRMLGEAIGRFASSLNKRVLFLGSGGLSHQ PPVPELAKADAHMRDRLLGSGKQLPENERELRQQRVISAAEKFVQDQHSLHPLNPVWDNR FMTLLEQGRLQELDAVSNEELSAMAGKSTHEVKTWVAAFAAISAFGNWRSEGRYYRPIPE WIAGFGSLSATTQN >gi|283548478|gb|GG730299.1| GENE 2307 2509263 - 2510927 1858 554 aa, chain - ## HITS:1 COG:mhpA KEGG:ns NR:ns ## COG: mhpA COG0654 # Protein_GI_number: 16128332 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 554 1 554 554 1030 89.0 0 MTTINPDIQPAVQHSVQVAIAGAGPVGLMMANYLGQMGIEVLIVEKLDTLIDYPRAIGID DEALRTMQSVGLVENVLPHTTPWHAMRFLTPKGRCFADIQPMTDEFGWSRRNAFIQPQVD AVMLEGLSRFPNVRCLFSRELEAFSQQNGEVTLNLKAPDGQRETVKAQWLVACDGGASNI RRSLNVPFEGKTAPNQWIVVDIANDPLSTPHVYLCCDPVRPYVSAALPHAVRRFEFMVMP GETEAQLSEPQNMRQLLSKVLPNPDNVEPIRQRVYTHNARLAERFRIDRVLLAGDAAHIM PVWQGQGYNSGMRDAFNLAWKLALVINGKAGDALLDTYQQERRDHAKAMIDLSVTAGNVL APPKRWHGAVRDGVSWVLNYIPPVKRYFLEMRFKPMPQYHAGALVREGEAKTSPVGKMFI QPKVTLESGDVTLLDNVIGPNFAVIGWGCNPLWGMSEAQIQQWRALGTRFIQVVPDTQIS TDQDNHDGVIRIGDTQNRLRAWFAQHNAALVVMRPDRFVAAIAIPQTLGSTLNKLASVMT LTRVNADLPVEKVA >gi|283548478|gb|GG730299.1| GENE 2308 2511119 - 2511931 734 270 aa, chain + ## HITS:1 COG:ECs0401 KEGG:ns NR:ns ## COG: ECs0401 COG1414 # Protein_GI_number: 15829655 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 270 39 308 315 464 92.0 1e-131 MKNDESTEYKTVRGLTRGLMLLNMLNRLDGGASVGLLAELSGLHRTTVRRLLETLQDEGY VRRSLSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLREVIWPTDVSTLDVDAMVV RETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPENERQELIEMLASRPGEAFQLAR EPLKLNAILTRARKDGFGQNYRGWDQEEKIASIAVPIRSEQRVIGCLNLVYMASAMTIEQ AAEKHLPALQKVAKQIEDGVESQDILVAGR >gi|283548478|gb|GG730299.1| GENE 2309 2512040 - 2512435 155 131 aa, chain + ## HITS:1 COG:VCA0401 KEGG:ns NR:ns ## COG: VCA0401 COG0346 # Protein_GI_number: 15601164 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Vibrio cholerae # 8 129 9 131 137 159 61.0 2e-39 MRTNKKCLGYISIVVDDYDRAIDYYVNKLGFTLIEDTPQPGKRWVVVSPNPESDCHLLLA RAANETQEAFIGNQCGGRVFLFLQTDDFWRDYHAMKSAGVQFCEAPREEEYGTVVVFEDH HGNRWDLLQRK >gi|283548478|gb|GG730299.1| GENE 2310 2512582 - 2513058 580 158 aa, chain - ## HITS:1 COG:no KEGG:CKO_00840 NR:ns ## KEGG: CKO_00840 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 157 1 157 157 281 94.0 4e-75 MNGTITTWFKDKGFGFIKDENGDNRYFHVIKVANPELIKKDAAVTFEPTTNNKGLSAYAV KVIPDSKYIYIAGERLKLTSIKSYLVYSEEVPAETRIDKENAVLSVGVLMNSIRPKSDVK PGEMRTLKKLAITTFQGTTLIFSEDEIDIDATVKLLKV >gi|283548478|gb|GG730299.1| GENE 2311 2513145 - 2513390 326 81 aa, chain - ## HITS:1 COG:no KEGG:ECS88_1441 NR:ns ## KEGG: ECS88_1441 # Name: ymjA # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 1 81 1 81 81 112 75.0 4e-24 MNNDIPLKYYDIADEYATEAAKPVSDAERDALAHYFQQLIVRLMNNEEIGEEAQQEMATV AGVDAQRIDDIAEFLNRWGNE >gi|283548478|gb|GG730299.1| GENE 2312 2513760 - 2514554 914 264 aa, chain + ## HITS:1 COG:Z0443 KEGG:ns NR:ns ## COG: Z0443 COG2220 # Protein_GI_number: 15800076 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Escherichia coli O157:H7 EDL933 # 1 258 1 258 258 418 77.0 1e-117 MNITQIRNATQRITFGGKTFLIDPMLAAKGAYPGFTGTARAEIRNPTVDLPVDIATLLNV DALIVTHLHQDHWDEAAARIVPKDKPIYVQNEQDAQVLRGQGFTQLTVLTHSTRLGDITL RKTGGQHGSDRAYAIPQMAERLGDACGVILQHPAEKTLYLVGDTIWRDEVENNMRTFQPD VVIVNAGFAHVIGFGPIIMGAEDVLKTHFTLPEAQIVATHMEAINHCLLTRTDLKAYARD NQIAQFVNVPEDGETLTFLMPAEE >gi|283548478|gb|GG730299.1| GENE 2313 2514556 - 2515506 805 316 aa, chain + ## HITS:1 COG:ECs0399 KEGG:ns NR:ns ## COG: ECs0399 COG4977 # Protein_GI_number: 15829653 # Func_class: K Transcription # Function: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain # Organism: Escherichia coli O157:H7 # 1 315 1 315 317 507 75.0 1e-143 MQPLNVAIVAVEDFSPFHFSVPCIIFSDRVAAKKRFEVQLCAEQPGIISSQDGFSITAAY GYDAVAAADIVVLPYWGATAHRPPQSLLDALNRARQNGAQIVGLCLGAFVLGYAGLLDGK RAATHWEFEQDFQARFPAARLDINALYVDDDGIITSAGTAAALDCCLYVIRQRFGSTVAN QIARRMIVPPHREGGQAQFIEQPVAKNTQDQRINALLDYLRQHLHEPHNLDALAQRVMMS RRTLSRHFMKATGSSVAEWLIAERLRHSQELLESSQLPVERIAERVGFQSPVTWRQHFKA HFGVSPAEWRKTFRGA >gi|283548478|gb|GG730299.1| GENE 2314 2515658 - 2516740 847 360 aa, chain + ## HITS:1 COG:ECs0398 KEGG:ns NR:ns ## COG: ECs0398 COG1609 # Protein_GI_number: 15829652 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 356 1 356 360 545 81.0 1e-155 MKPVTLYDVADHAGVSYQTVSRVVNQASHVSAKTRQKVEAAMAELNYIPNRVAQQLAGKQ TSLIGVVTANLALHAPSQIVAAIKSRADQSGASVVIAMVERSGVEGCKAAVHNLLSQRVT GLIINYPLDEADAIAVAAACGTVPVLFLDVSDQTPINSVIFSHDDGARLGVEHLVQHGHQ RIALLSGPRTSVSARLRHAGWHKYLAHYQLQPVAELEGDWSAMSGFQQTLHLLNDGNLPT AMLVANDQMALGAMRAISEFGLRVAMDISVIGYDDTEDSACYIPPLTTIRQDFSLLGETS VDRLLQLPRGESTVGNQLLPVTLVQRKTVLPPETQTPSPLALADSLIQLARQVSQLTPKL >gi|283548478|gb|GG730299.1| GENE 2315 2516862 - 2519939 2674 1025 aa, chain + ## HITS:1 COG:lacZ KEGG:ns NR:ns ## COG: lacZ COG3250 # Protein_GI_number: 16128329 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Escherichia coli K12 # 1 1024 1 1021 1024 1710 80.0 0 MNLNTDSLSAVLARRDWENPGVTQLNRLEAHPPFCSWRSADEARQNQPSPHQRSLNGKWR FYWFAAPEAVPESWLTSDLPQADAIDVPSNWQMSGYDAPIYSNITYPFPVNPPYVPADNP TGCYSLTFNIEGAWLNEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSDYLLR GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPITHIRDLRITPRFNDDFSRAV LEAEVRVAGNVGDDLRVTLQLWNGETLTGEATSPPGSEIIDERGAYHDRATLRLNVENPA LWSAETPHLYRAVVQLHTAGGVLIEAEACDVGFRQVQIENGLLLLNGKPLLIRGTNRHEH HPVNGQVMDEATMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHG MVPMNRLSDDPAWLPAMSQRVTRMVQRDRNHPSIIIWSLGNESGHGVNHDALYRWLKSED PTRPVQYEGGGANTAATDIICPMYARVDQEQPFPAVPKWSIKKWLSMPGEQRPLILCEYA HAMGNSLGGYAKYWQAFRQYPRLQGGFVWDWVDQSLLKYDENGKAWSAYGGDFGDTPNDR QFCMNGLVFADRAPHPSLYEAKHAQQFFQFTLLPGAERQIEVTSEYLFRRSDNEVLHWSI AQDGNQLAAGEIVLDIAPQGRQIITLPDIPMPETAGQLWLTVRVEQPQATAWSDAGHISA WQQWKLEEKLNLLQPPRAGSAPRLTVSENAFTVAVNNKRWQFDRQSGLLTQYWIGDTAQL LTPLTDQFTRAPLDNDIGISEATRIDPNAWVERWKAAGHYRAEPQLLLCEAEALANSVLI ATTHAWQYQGETLFISRKSYRIDGHGEMQITVDVDVASGTPHPARIGLSCQLAQVAERVN WLGLGPHENYPDRLSAACFDRWDLSLDEMYTPYVFPSENGLRCGTRELHYGAHRWRGDFL FNISRFSQQQLMATSHRHLLQPEAGTWLNIDGFHMGVGGDDSWSPSVSPEFLLSAGRYHY QLSWR >gi|283548478|gb|GG730299.1| GENE 2316 2520142 - 2520390 197 82 aa, chain + ## HITS:1 COG:no KEGG:ETAE_1353 NR:ns ## KEGG: ETAE_1353 # Name: yceK # Def: predicted lipoprotein # Organism: E.tarda # Pathway: not_defined # 6 79 15 88 101 85 47.0 7e-16 MALFISALLSGCGSINARTEGEDSNTYYVGTHHDIDKLKNPGAYDYNYFDLALLFIDVPL SFVADTVYAPFDYYHGPYKKTK >gi|283548478|gb|GG730299.1| GENE 2317 2520434 - 2522320 2195 628 aa, chain - ## HITS:1 COG:STM0371 KEGG:ns NR:ns ## COG: STM0371 COG0365 # Protein_GI_number: 16763751 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Salmonella typhimurium LT2 # 1 628 1 628 628 1210 91.0 0 MSYSEFYQRSITQPESFWAEQAQRIDWQQPYTQVLDHSNPPFARWFCGGKTNLCHNAIDR WVEKQPEALALIAVSSETEEERTFTFRQLYDEVNVAAAMLLSLGVQRGDRVLVYMPMIAE AHIMLLACARIGAIHSVVFGGFASHSVAARIDDAQPVIIVSADAGARGGKILPYKKLLDD AISQAQHQPRHVVLVDRGLAKMARVEGRDLDFAALRQQHLGARVPVTWLESNETSCILYT SGTTGKPKGVQRDVGGYAVALATTMDTIFGGKAGGVFFCASDIGWVVGHSYIVYAPLLAG MATVVYEGLPTYPDCGVWWKIVEKYQVSRMFSAPTAIRVLKKFPTAQIRNHDLSSLEVLY LAGEPLDEPTASWVTQTLGVPVIDNYWQTESGWPIMAIARGLDDRPSRLGSPGVPMYGYN VQLLNEVTGEPCQANEKGMLVIEGPLPPGCIQTIWGDDERFVHTYWSLFSRQVYATFDWG IRDADGYYFILGRTDDVINVAGHRLGTREIEESISSYPNVAEVAVVGVKDALKGQVAVAF VIPKQSDSLEDRDIAHSEEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQA ICEGRDPGDLTTIDDPASLQQIRQAIEE >gi|283548478|gb|GG730299.1| GENE 2318 2522361 - 2523812 1824 483 aa, chain - ## HITS:1 COG:ECs0387 KEGG:ns NR:ns ## COG: ECs0387 COG2079 # Protein_GI_number: 15829641 # Func_class: R General function prediction only # Function: Uncharacterized protein involved in propionate catabolism # Organism: Escherichia coli O157:H7 # 1 483 1 483 483 973 95.0 0 MSAHISNVRPDFDREIVDIVDYVMNYEITSQVAYDTAHYCLLDTLGCGLEALEYPACKKL LGPVVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGI LATADWLSRNAVAAGKAPLTMKKVLTGMIKAHEIQGCIALENSFNRVGLDHVLLVKVAST AVVAEMLGLSRDEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAK TGEMGYPSALTAKTWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAA MTLYEQLQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGR LTAADYEDGVAQDKRIDALREKIACFEDPAFTADYHDPEKRAIANAITLEFTDGSRFEEV VVEYPIGHARRRHDGMPKLVEKFKINLARQFPTRQQQRILDVSLDRARLEQMPVNEYMDL YVI >gi|283548478|gb|GG730299.1| GENE 2319 2523850 - 2525019 1426 389 aa, chain - ## HITS:1 COG:prpC KEGG:ns NR:ns ## COG: prpC COG0372 # Protein_GI_number: 16128318 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Escherichia coli K12 # 1 388 1 388 389 756 96.0 0 MSDTTILQNSTHVIKPKKSVALSGVAAGNTALCTVGKSGNDLHYRGYDILDLAQQCEFEE VAHLLIHGKLPTRDELTAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCT LPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGE KPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANE VSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGS LKMYNIADRLEEVMWETKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIE QRQDNKIIRPSANYTGPEDRVFVPIEKRC >gi|283548478|gb|GG730299.1| GENE 2320 2525145 - 2526026 1011 293 aa, chain - ## HITS:1 COG:prpB KEGG:ns NR:ns ## COG: prpB COG2513 # Protein_GI_number: 16128316 # Func_class: G Carbohydrate transport and metabolism # Function: PEP phosphonomutase and related enzymes # Organism: Escherichia coli K12 # 1 292 1 292 296 523 93.0 1e-148 MSLHSPGLAFRAALSKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLG ISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVKSMIKAGAAALHIEDQIGA KRCGHRPNKAIVSKEEMVDRIRAAVDARTDPNFVVMARTDALAVEGLEAAIDRAQAYVEA GADMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSANVAMALYPLSAF RAMNRAAERVYNVLRQEGTQKSVIDIMQTRNELYESINYYQFEEKLDALYTKK >gi|283548478|gb|GG730299.1| GENE 2321 2526279 - 2527889 1535 536 aa, chain + ## HITS:1 COG:ECs0384 KEGG:ns NR:ns ## COG: ECs0384 COG1221 # Protein_GI_number: 15829638 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Escherichia coli O157:H7 # 7 530 4 527 528 867 84.0 0 MADTHFPPRVNDDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFEKAVTYIRKKL ATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAKAGKLTSSIGVITYQETIP ALLAFQKTFNLQLEQRSYTTEEDARGQINELKANGTQAVVGAGLITDLAEEAGMTGIFIY SAATVRQAFVDALDMTRLTLRRNGQYASGDTLRTRYALGDMRGHSPQMEQVRHTIMLYAR SRAPVLIQGETGTGKELAAQAIHREFFTRQDNRRGKPSPPFVAVNCGAITESLLEAELFG YEDGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPI PVDVRVISATHCNLEQEMKQGEFRTDLFYRLSILRLKLPPLRERLPDILPLAEGFLKQSL AELDAPFSDAVRKGLALSQHTLLNYGWPGNIRELRNMMERLALFLSVEPQPDLNEQFLQQ LLPELAAVAAPPLVTSSLTPQQVLAQFNGDKTAAARYLGISRTTFWRRLKENPPVQ >gi|283548478|gb|GG730299.1| GENE 2322 2527922 - 2528197 280 91 aa, chain - ## HITS:1 COG:no KEGG:CKO_02832 NR:ns ## KEGG: CKO_02832 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 91 1 91 91 122 85.0 6e-27 MKTGIKVLIGALAFVVSNAYAAEFMTKVEFEKVESQYTKIGDISTSNEVSAADAKEDLLK KAEEKGADVVVLTSGQTDNKIHGTANIYKKK >gi|283548478|gb|GG730299.1| GENE 2323 2528385 - 2529932 1052 515 aa, chain - ## HITS:1 COG:no KEGG:Sterm_1912 NR:ns ## KEGG: Sterm_1912 # Name: not_defined # Def: hypothetical protein # Organism: S.termitidis # Pathway: not_defined # 341 509 45 208 212 68 26.0 8e-10 MAEPQYLFAEIPLSRSAFERWLKSSPCTVSHWPEWADSNRPDEENAASVLDALMPFFTAE PELQQCLLLHDKQQGVLHCALWLRYEEMRATMMQMVALLRGTAPFMTAKAHGRVQHGENC CGTLTLTRSDSRWTAECEALSFPEWSRAWLHSLGEGSDAQWMDAKLFNALKRRYNHYLLN ASPEKPILIKKTEYYSNGREVIDYDGNRIPGANPLTFKRLCHTYFDTLYTDGQAVWIDSM SLRLYRYKIADNLTPERIQVLEEGYDSDFLVRIDDKVWFRAQDNVPQPFYLTSLTIDPDS FHRLKYGEYADKNALYRNMGNSGLRVVKDLHPKDIVNIVGEFVITKNAVLYFGEVLALAD AKSFRSLKYDFYCDDRHVWLRNNLLEKLDSQTFRFIALEHDLVADSRHVYYGAQYIVDAD PQTLEVLMRGPFLFWRDKESIWYHNTKLAGADVTQGEIEIYPGSVFCRIGNRIWGMATEL EDVDIASFVVTEWDYAEDKHGRFYRNRRLDKTDYA >gi|283548478|gb|GG730299.1| GENE 2324 2530090 - 2530737 757 215 aa, chain + ## HITS:1 COG:ECs0382 KEGG:ns NR:ns ## COG: ECs0382 COG1280 # Protein_GI_number: 15829636 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1 215 9 223 223 349 86.0 2e-96 MESLFMEPLHAVVLTVSLFVLTFFNPGANLFVVVQTSLASGRRAGVMTGLGVALGDAFYS GLGLFGMATLITQCEEVFSLIKIVGGAYLLWFAWNSIRHQATPQMPALQQPLSAPWYVFF RRGLLTDLSNPQTVLFFISIFSVTLSAETPTWARLMAWAGIVLSSIIWRIFLSQAFSLPA VRRAYGRIQRIASRVIGAIIGVFALRLIYEGISHR >gi|283548478|gb|GG730299.1| GENE 2325 2530823 - 2532211 1480 462 aa, chain + ## HITS:1 COG:ECs2095_2 KEGG:ns NR:ns ## COG: ECs2095_2 COG2199 # Protein_GI_number: 15831349 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Escherichia coli O157:H7 # 273 461 1 189 192 177 44.0 5e-44 MEQVDPVNDTLLLTEWQALLRQTPPEVHTVLTSLSDEELRHLVNVFYDYMLSHAESALFL NTEQVSARLSGSMFDWLRSVLGSANEDLSQLLAKQRKIGVVHARIGLPIDLVNRGARKLK DELYRVLKKKADYSPALLSDAICFSSLAMDTALEAMTVSYSPSYQNSMHTQEQYRLQTIY DDVNVERERQIRSFTDWENQFIYNIATGMPFGELVLLANSDFGMWFAHKGKYILGNGNLL KEMEALIAEIDNRLTTTLSHQHLATDPERMSLLQDVRQLSAKIHFLLASMFDALVKQENG KDSLTQLLNRRFIPTIMRREISLALHTRKPFTLAMLDIDYFKQINDSYGHNTGDMTLKNV AAVIYDHIRSSDYVFRYGGEEFMILLVESDRSQASIILETLRMKIADLRMAASATEAFSV TVSIGIAEYDYHPDYKQLVDKADRALYLAKSNGRDRVEIFQE >gi|283548478|gb|GG730299.1| GENE 2326 2532243 - 2532422 71 59 aa, chain - ## HITS:1 COG:no KEGG:plu4427 NR:ns ## KEGG: plu4427 # Name: not_defined # Def: hypothetical protein # Organism: P.luminescens # Pathway: not_defined # 9 59 11 61 74 73 80.0 4e-12 MLIAGQINTLRAYPIRAILLAILNLGSARNPHVLRVRSGFCALSVFKLPAPITPTGIGS >gi|283548478|gb|GG730299.1| GENE 2327 2532580 - 2533674 701 364 aa, chain + ## HITS:1 COG:ECs1147 KEGG:ns NR:ns ## COG: ECs1147 COG0348 # Protein_GI_number: 15830401 # Func_class: C Energy production and conversion # Function: Polyferredoxin # Organism: Escherichia coli O157:H7 # 1 364 1 357 357 546 72.0 1e-155 MNGKKRTRWQRRPGTTGGKLPWNDWRNASTWRKATQFLLLAINIYIGVTFYYWVRYFETA GTSVYIPRPGGIEGWLPIAGLMNIRYTLETGFLPPIHAASMLLLVAFILISLLLKKAFCS WLCPVGTLSELLGSLGKKVLGRNFTPPRWLDIPLRSLKYLLLAFFLYIALSMPAQGIQYF LMSAYGMIIDVKMLDFFRHIGPATLIFMVVISVLSLFIRNAWCRYLCPYGVLLGLFSLLS PFKIRRNADSCIDCGKCAKNCPSAIPVDRLIQVRTVECTGCMTCVGSCPVASTLSFSLHT PPGEQENGKSLPRQTALSGVVMTILVLGILFATIGYAVYANVWDTPVPDRMYFQLIPKAK TIGH >gi|283548478|gb|GG730299.1| GENE 2328 2533847 - 2534356 489 169 aa, chain + ## HITS:1 COG:no KEGG:CHAB381_1312 NR:ns ## KEGG: CHAB381_1312 # Name: not_defined # Def: hypothetical protein # Organism: C.hominis_BAA-381 # Pathway: not_defined # 6 167 10 168 169 88 31.0 1e-16 MTKIKLALLLPLFLAGCTMSDGELRNAYAQHYQQPTAYVEAYKQKIAGMDINTLAQYAAT EDKKKMRGQPRLKIDEFITIENVQAKGNRVVYDYSLSESWQALSADKQREKQSNMNKDLI YRTCSLETVRLAQAKGLEEEHNYYSQYPDKIAFTLRTSSQICLQNGFTK >gi|283548478|gb|GG730299.1| GENE 2329 2534917 - 2537007 2417 696 aa, chain - ## HITS:1 COG:STM0364 KEGG:ns NR:ns ## COG: STM0364 COG1629 # Protein_GI_number: 16763744 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Salmonella typhimurium LT2 # 1 696 7 702 702 1258 89.0 0 MFTKTRLALLVGWVTGSVAFPLLAQETTKNDTVVVTSQMQSGATKLATPDIETPQSVSII TREQFEEQGATSVRQAVSYTPGVYSNQIGASNRFDYIVLRGFSDGSLDNVYLDGLKMMGD TNSHSSLVVDPWFLEDIEVVRGPASVLYGRSSPGGIVALTSRKPSFDAGGEVKLFAGNNN QRGAAFDVTGALDDNDRVAARLSGMTRYADSQFGPLKEERYALMPSLTWRITDQTRLDLM AYLHRDPEGGSHSGLPYDGTVVPHYGQKISNTFYEGEDDYDKYDRRENMVGYNIEHLFDN GWSVRQKLRYLHTDVELNQVYAAGWLNETELNRGYSGSDENMSAITLDNQLDGSFDTWQV NHRLLVGIDYQDRSNNTTGYYGAFPPIDAFNPVYGAKPDYIDMYAREKHKLRQTGYYLQD QMSWDRWRITLGGRYDRVSVSNIDKINDTRSDLNKDNVSTRAALLYLFDNGFAPYVSYST AFTPTSFADENGNLLDPMKGKQWEAGLKYEPEGLNSQFSASVFRINQTNIATKEEPTDPY RSIGEIESEGVELEAISQLTDSFRLQAAYTYTDIRYKKSSPEEQGKRAVYAPRNQASTWL SYDVKSGPLDGLTLGSGVRYVNGITSDRLNTHTLPSYTLVDMVIGYDLTKIGIKGLSAQV NVNNLTDKRYVAACNSLSYCYFGAERSIVGSVSWKF >gi|283548478|gb|GG730299.1| GENE 2330 2537147 - 2538130 653 327 aa, chain - ## HITS:1 COG:STM0363 KEGG:ns NR:ns ## COG: STM0363 COG2207 # Protein_GI_number: 16763743 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 8 323 9 322 334 409 66.0 1e-114 MNNTTPLNASGRVARIFSVSEFMDFGERYGIDYRFPLLAQKADLPSCSPVLQGEIEEMTL PCGMCVTHSDVQVLQPYETTSRHSSPLYMLVVLDGCVILTLNGQEHVVRSGMAFSSRLSE HQTMCARHHADRKLRTLSLGLYPDGAWRTGLLESLMREWERCQTPTLIWQVPGFLLSGLE YAQQGALSNVSRQLMLEGLILQLFGHGLSVCQVESGKRLAASGEQQRLEIVRRLLEQNPE HDHTLNELAQRAAMSPSSLRSKFRAAYGCPVFDYLRDCRLERARGYLLAGHSVQQAAWMS GYQHATNFSTAFRRRYGFSPGDMLKLC >gi|283548478|gb|GG730299.1| GENE 2331 2538306 - 2539889 718 527 aa, chain - ## HITS:1 COG:YPO1675 KEGG:ns NR:ns ## COG: YPO1675 COG0840 # Protein_GI_number: 16121939 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Yersinia pestis # 1 518 1 520 557 273 37.0 7e-73 MLKNMRIKTSLLLLLLVFTFMQFLSNGFELVDLKGTQKSTLLLHNIVKEQDSLHNVVGAV YKVRSILDNIQLQNMAETQQTLKQVQDEIAYARKQFTIFWNIPGLTADDPQVGKIVRTAF EQQMNAEQKYVDKLNEAISSGNIVDTSASANAELLVSRKNFDSEIGNYYKSTMLVGENIV DQTHVQFNTSILKISLLLAVTVLIFIICNIWINRTIIQPLNIVSEHFSRIGKGDLSHPVK VPGNNEIGLLCLNLQHMQNGLRETVTTIRDGVESINIGMQEIASGNSDLSTRTEQQAAAV VETAASMEQISVTTKNNTDKSHQASAMTSESTEMALRGERLMSDMVEKIHLISRNAQSVN EISHVIDSIAFQTNILALNAAVEAARAGESGRGFAVVASEVRTLAQRSAASAKEISELVA KAAISVKEGVEIAENSGAMMADIARAIRNINILMEDISGASGEQSSGIEQIRVAVTQMEQ VTQQNASLVEEIAATTGSVEEQSAMLSQAVAVFQIEEDPQQGIQHNQ >gi|283548478|gb|GG730299.1| GENE 2332 2540136 - 2540384 104 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834357|ref|ZP_06354098.1| ## NR: gi|283834357|ref|ZP_06354098.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 82 1 82 82 139 100.0 6e-32 MNRELLKQKLEIATEWIRLSDTADNLSISFRGILEIGESSSAPDSSTPLLRLENEMATIA VDSMSWVRVPADRQEKVTVYIL >gi|283548478|gb|GG730299.1| GENE 2333 2540400 - 2540999 238 199 aa, chain - ## HITS:1 COG:no KEGG:Pat9b_4517 NR:ns ## KEGG: Pat9b_4517 # Name: not_defined # Def: hypothetical protein # Organism: Pantoea_At-9b # Pathway: not_defined # 12 166 13 167 217 99 30.0 7e-20 MRHRYQDDLEAFTWSALVAIGIAIQDHKIHSKMSEHIFIMHWLAVAKKRKLFSRSIVNEL QWLIDEGKKKSLNAQLKFKIEYLYATSSGDVTMQNNYFKFTHAIEMLRNNGWESFLLTPE KWRDLHDNIKVRKGNFIFMDDTRLQECFGVQGEIVKPFCIRAHGDVDFAKLTFIQHNLPV EFVKDISNEFHHFQFLTDK >gi|283548478|gb|GG730299.1| GENE 2334 2541326 - 2542687 1184 453 aa, chain - ## HITS:1 COG:PM0230 KEGG:ns NR:ns ## COG: PM0230 COG3069 # Protein_GI_number: 15602095 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 2 443 1 437 449 281 44.0 2e-75 MIQVLIALLVIVVVARLILKGYRAEPVLFIAGLVLMICTALTGWGSVLPKGVAGTGISFL DPFEVMRDLFSTRAADLGLMIMALMGFAHYMDHIGANEAVVRVVTKPLRALRSPYILLFF SYLLASLLQLAIPSATGLAVLLMGTMFPIMLGLGLSAASAAGVIATSLGVAYTPTAIDAI RGSKAVNMDVVEYVVYHQGPAALATVLVVGVCHFFWQRYCDRKAGTLPREIGSAEVTDSG TAPACYALLPMLPILMAVASSEMFVKGINLNIITIVLISMAICMLIEWLRVRDLKAVCEG FSHFLKGMGAAFTGVVGLLVAAGVFAHGIKVIGAIDQLILMAEHVGLPPFAMAVVFALVT LAAAIIMGSGNAPFLAFVELIPQIAASMGANAVAMILPMQQASHMGRAISPVSGVVIAVS SGAKITPFDVVKRTAVPLIVGFVTHTLIIGIFY >gi|283548478|gb|GG730299.1| GENE 2335 2542684 - 2543940 983 418 aa, chain - ## HITS:1 COG:FN0733 KEGG:ns NR:ns ## COG: FN0733 COG2195 # Protein_GI_number: 19704068 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Fusobacterium nucleatum # 5 405 11 407 412 337 43.0 4e-92 MDIVERFINYTKINTTTSRENGANGIMPSSAGQMTLAKMLAAELEALGMENIEVRDTAIV TATLPGNTDDTVPVVSFFGHLDTSAEQTADTNAQRLHYSGGDLCLNKELNIFLRESEFPE LKNYIGDDLLVTDGTSLLGADDKAAIAAIMNALQYLVTHPEIKHGPVKVGFVPDEEQGLR GAKAFDVAGFGADFGYTLDCCGIGEFVYENWNAGDAEIIFTGQSAHPMSAKGKLKNSLLM AHKFIAMLPGGEAPEYTQGREGYYWVKQLQGNSARTVLKLDIRDFTEEGYKARMAFIRQL AVSTCALWGENSVVCHLTDRYANVSNSLQGDAHYPIDIALRAYQKCGITPAPVAMRGGYD GAVLSQKGLPCPNIFTGAHNFHSIYEYLPVRSLRAASDVVVAVIEETFAEFTQGRAQS >gi|283548478|gb|GG730299.1| GENE 2336 2545207 - 2545464 311 85 aa, chain + ## HITS:1 COG:STM4501 KEGG:ns NR:ns ## COG: STM4501 COG3811 # Protein_GI_number: 16767745 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 85 1 85 85 128 90.0 2e-30 MNLSRQEQRTLHVLAKGGRIVHVRDASGRVTSVECYSREGLLLCDCTLEVFKKLRTKKLI KSVKGQPYRINTTGLNNVRAQLDNR >gi|283548478|gb|GG730299.1| GENE 2337 2545475 - 2546221 594 248 aa, chain + ## HITS:1 COG:STM4500_2 KEGG:ns NR:ns ## COG: STM4500_2 COG0500 # Protein_GI_number: 16767744 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 248 1 248 248 395 75.0 1e-110 MDIPKIFTISESAHRIHNPFTAQKYATLGQALRMAPGTRILDLGSGSGEMLCTWARDHGI CGVGIDMSQLFSQQATQRAAELGVEKQVSFVHADATGYIAEEKFDIAACVGATWIAGGVA GTVRQLEQSLKPGGIMLIGEPYWRQMPATEKIAQACGATSVTDFLSLPELVSSFELLGYD VVEMVLADQEGWDRYEAAKWLTMRRWLEAHPDDEFATEVREQLSSSPGRHVAFTREYVGW GVFALMKR >gi|283548478|gb|GG730299.1| GENE 2338 2546265 - 2546840 436 191 aa, chain - ## HITS:1 COG:PA4336 KEGG:ns NR:ns ## COG: PA4336 COG0693 # Protein_GI_number: 15599532 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Pseudomonas aeruginosa # 2 185 5 188 194 295 79.0 4e-80 MKKILMLVGDYAEDYETMVPFQALQMLGHRVDAVCPDKSQGDYVQTAIHDFDGAQTYSEK PGHRFTLNANFAEARAADYDALLIPGGRAPEYLRLNPDVIQLVQDFNSAGKPIAAVCHGP QLLAAAGVLENRTCSAYPACAPEVRLSGGHYADIGIDQAHVDGNLVTAPAWPAHPQWLAK FVEVLMKPASK >gi|283548478|gb|GG730299.1| GENE 2339 2546990 - 2548378 1780 462 aa, chain - ## HITS:1 COG:ycjJ KEGG:ns NR:ns ## COG: ycjJ COG0531 # Protein_GI_number: 16129257 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 449 19 467 479 748 88.0 0 MSTNTPVELVAQPGKAQLRKSLKLWQVVVMGLAYLTPMTVFDTFGIVSGVSNGHVPASYL LALAGVLFTAISYGKLVRQFPQAGSAYTYAQKAINPHVGFMVGWSSLLDYLFLPMINVLL AKIYLSALFPGVAPWIWVVMFVAILTAANLKSVNLVANFNALFVLVQVAIIVVFIFLVVQ GLHKGEGVGTVWSLQPFISQNAHLIPIITGATIVCFSFLGFDAVTTLSEETPDAARTIPK AIFLTALYGGLIFIAASFFMQLFFPDISRFKDPDAALPEIALYVGGKLFQSIFLCTTFVN TLASGLASHASVSRLLYVMGRDNVFPEKYFGYVHPKWRTPALNVIMVGIVALSALFFDLV TATALINFGALVAFTFVNLSVFNHFWRREGRKHTWQEKLHYLVLPMVGAATVAVLWVNLE VTSLTLGLVWAGVGLVYLAWLTGRFRKPPPQFDAAKSERAWE >gi|283548478|gb|GG730299.1| GENE 2340 2548722 - 2550140 1386 472 aa, chain - ## HITS:1 COG:ycjK KEGG:ns NR:ns ## COG: ycjK COG0174 # Protein_GI_number: 16129258 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Escherichia coli K12 # 1 472 27 498 498 894 90.0 0 METNIVEVENFVQHSEERRSSAFAREVKQYLERYPNTQYVDVLLTDLNGCFRGKRIPVAG LSKVEKGCYFPASVFAMDILGNVVEEAGLGQELGEPDRTCVPVLGTLTPSAADPECIAQM MLTMLDEDGAPFDVEPRNVLNRLWQKLRQRGLFPVVAVELEFYLLDRKRDPEGYLQPPCA PGTDDRNTQSQVYSVDNLNHFADVLNDIDELARLQLIPADGAVAEASPGQFEINLYHTDN VLDACDDALALKRLVRLVAEKHKMHATFMAKPYEEHAGSGMHIHISIMNNKGENILADAN GDDSALLKRALAGMIDLMPASMALLAPNVNSYRRFQPGMYVPTQASWGHNNRTVALRIPC GDRDNHRVEYRVAGADANPYLVMATILAGILHGLDNELPLQEEVEGNGLEQEGLPFPIRQ SDALWKFMQNDSLRELLGERFSHVYHACKNDELIQFERLITDTEIEWMLKNA >gi|283548478|gb|GG730299.1| GENE 2341 2550353 - 2551117 372 254 aa, chain + ## HITS:1 COG:ycjL KEGG:ns NR:ns ## COG: ycjL COG2071 # Protein_GI_number: 16129259 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Escherichia coli K12 # 1 254 5 258 258 434 83.0 1e-121 MGNIFDKPVIGVVMCRNRLKGHETQTLQEKYLNAVLNAGGLPIALPHALAEPELLNALLP KLDGIFLPGSPSNVQPHLYGENGDESDADPGRDLLSMALITAGLERRIPIFAICRGLQEL VVATGGTLYRRLCDHPQFLEHREDAELPVEQQYAPSHEVQVQQGGLLSQLIPGCSTFWVN SLHGQGAKTLGPQLRVEARSQDGLVEAASVHDHPFALGVQWHPEWNSSEYALSRLLLEGF ITACQNHLAEKQRL >gi|283548478|gb|GG730299.1| GENE 2342 2551143 - 2551700 394 185 aa, chain + ## HITS:1 COG:ECs1876 KEGG:ns NR:ns ## COG: ECs1876 COG1396 # Protein_GI_number: 15831130 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 185 1 185 185 333 95.0 2e-91 MSDDGLAPGKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYG LSLSEFFAEPEKPDEPQVVINQEDLIEIGSQGVSMKLVHNGNPNRTLAMMFETYQPGTTT GERIKHQGEEIGTILEGEVILTINGQTYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH TPTTF >gi|283548478|gb|GG730299.1| GENE 2343 2551838 - 2553325 1652 495 aa, chain + ## HITS:1 COG:aldH KEGG:ns NR:ns ## COG: aldH COG1012 # Protein_GI_number: 16129261 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli K12 # 1 495 1 495 495 829 83.0 0 MNFQNLKYWREKASHYSPETRLFINGEYCAAADNETFITLDPAGQRPLAKVARGKKADVD RAVTAARTVFERGDWSQASPAERKAVLHKLADLMEQHHEELALLETLDTGKPIRHSLRDD IPGAARAIRWYAEAIDKVYGEVATTSLNDLALIVREPVGVIAAIVPWNFPLLLACWKLGP ALAAGNSVILKPSEKSPLTAIRLAALAKKAGLPDGVLNVVSGYGHEAGQALSQHPDVDAI TFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLPKAAANAAAGIFYNQGQ VCIAGTRLLLEESIADEFIALLKEQAKNWQPGNPLDPETTMGTLIDNAHADTVETFIRDG ETQGTLALDGRSHVHPAAIGPTIFVDTAPQAHVSRDEIFGPVLVITRFSSEAEALALAND SDYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHAL EKFSELKTIWISLES >gi|283548478|gb|GG730299.1| GENE 2344 2553328 - 2554608 1647 426 aa, chain + ## HITS:1 COG:ordL KEGG:ns NR:ns ## COG: ordL COG0665 # Protein_GI_number: 16129262 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Escherichia coli K12 # 1 426 1 426 426 790 87.0 0 MTEHTSSYYAASANQYEPFPTLSESVSCDVCVVGGGYTGLSSALHLAEMGYDVVLLESAR IGFGASGRNGGQLVNSYSRDIDVIERSYGPDAAKMLGSMMFEGGNIIRERIKRYQIDCDY RPGGLFVALNHKQMETLEEQKSNWERYGNTQLELLDSSEIRREVSSDRYVGALLDHSGGH IHPLNLAIGEANAIRLNGGRIFEQSPVTRIQHTSPAVVSTEKGQVTARFVIVAGNAYLGD KLEPALAKSSMPCGTQVLTTEPLSAEMARSLIPKNYCVEDCNYLLDYYRLTGDNRLLYGG GVVYGARDPDDIERLVMPKLLKTFPQLQGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYM QGYSGHGVTCTHLAGRLISELLRGDAERFDAFANLPHYPFPGGRSLRIPFTAMGAAYYSL RDRLGV >gi|283548478|gb|GG730299.1| GENE 2345 2554817 - 2555944 687 375 aa, chain + ## HITS:1 COG:STM1786 KEGG:ns NR:ns ## COG: STM1786 COG1740 # Protein_GI_number: 16765127 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Salmonella typhimurium LT2 # 4 375 2 372 372 710 92.0 0 MNTNNEETFYQAMRRKGVSRRSFLKYCSLAATSLGLGAGMTPRIAWALENKPRIPVVWIH GLECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDILRQYHGRYIL AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATP IDKVITDKPIVKVPGCPPIPDVMSAIITYMVTFDRLPELDRLGRPQMFYGQRIHDKCYRR AHFDAGEFVESWDDDAARKGYCLYKMGCKGPTTYNACSTTRWNGGVSFPIQSGHGCLGCS ENGFWDRGSFYSRVVDIPQIGTHSTADTVGLTALGVVAAGIGVHAVASAVNQHNRHKQQL ADAGQQSSDHKDKQA >gi|283548478|gb|GG730299.1| GENE 2346 2555941 - 2557734 1760 597 aa, chain + ## HITS:1 COG:STM1787 KEGG:ns NR:ns ## COG: STM1787 COG0374 # Protein_GI_number: 16765128 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Salmonella typhimurium LT2 # 1 597 1 597 597 1222 94.0 0 MSTSYQTQGYTLNNAGRRLVVDPITRIEGHMRCEVNIDEQNIITNAVSCGTMFRGLEIIL QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL VHFYQLAGMDWIDVLNALKADPRATSQLAQSLSAWPMSSPGYFFDVQNRLKKFVEGGQLG IFRNGYWGHPQYKLSPEANLMGFAHYLEALDFQREIIKIHTVFGGKNPHPNWIVGGMPCA INIDQSGAVGAVDMERLNLVQSIISRTADFINNVMVPDALAIGQFNKPWSQIGAGLSDKC VLSYGAFPDIANDFSDKSLLMPGGAVINGDFNNVLPVDLADRQQIQEFVDHAWYRYPDDQ LGRHPFEGITEPWYNPGDVKGSDTDIQQLNEQERYSWIKAPRWRGHAMEVGPLARTLIAY HKGDAATIESVDRMMSALKLPLSGMQSTLGRILCRAHEAQWAVSKLQYFFDKLMTNLKNG NLATANTEKWEPESWPQHCRGIGFTEAPRGALGHWASIRDQKIDLYQCVVPTTWNASPRD PKGQIGAYEAALMGTQMAIPDQPLEILRTLHSFDPCLACSTHVLGDDGSELIAVQVR >gi|283548478|gb|GG730299.1| GENE 2347 2557753 - 2558487 579 244 aa, chain + ## HITS:1 COG:STM1788 KEGG:ns NR:ns ## COG: STM1788 COG1969 # Protein_GI_number: 16765129 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I cytochrome b subunit # Organism: Salmonella typhimurium LT2 # 1 244 1 243 243 419 88.0 1e-117 MTGKISPRVGEARDAAVSHYVFEAPVRLWHWLTVGCMLILMVTGYFIGRPLPSVSGEATY LFYMGDIRLAHFAAAMVFTVILLMRIYWAFVGNRYSRELFIVPVWRRSWWRGAFSVVRWY LFLEKKPGEDIGHNPVAQAAMFGYFLLSVFMILTGFALYSEHSQYAIFTPFRYVTAFFYW IGGNSLDIHSWHRLGMWFIAAFIMGHVYMAIREDIMSDDTVISTMINGYRSHKFAKRQHD KEAS >gi|283548478|gb|GG730299.1| GENE 2348 2558484 - 2559065 783 193 aa, chain + ## HITS:1 COG:ECs1131 KEGG:ns NR:ns ## COG: ECs1131 COG0680 # Protein_GI_number: 15830385 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 192 1 192 195 317 85.0 7e-87 MSEPNVIVMGLGNLLWADEGFGIRLAERLYAHYHWPESVEIVDGGTQGLNLLGYVEQASH LLLLDAIDYGLAPGTLQTYAGEKVPSYLSAKKMSLHQNSFSEVLALADIRGHLPAHIALV GLQPVQLDDYGGSLTDIARAQLPAAEQAALTQLAAWGIAPQKIDETRCLNYECLSLENYE GVRIRQYRVTLER >gi|283548478|gb|GG730299.1| GENE 2349 2559071 - 2559472 574 133 aa, chain + ## HITS:1 COG:no KEGG:NT01EI_3405 NR:ns ## KEGG: NT01EI_3405 # Name: not_defined # Def: hydrogenase-1 operon protein HyaE # Organism: E.ictaluri # Pathway: not_defined # 1 132 1 132 132 205 79.0 4e-52 MLNDKPFSALWQRMLAKGWQPLTASELDDWATRVGNGVVLLSSDPRRTPEVSDNPVMIAE LLREFPQFAWHIAMADLAHSEAIGDRFGVFRFPATLVFIHGELRGILSGIHPWADLLNLM RPLVEERIPSESV >gi|283548478|gb|GG730299.1| GENE 2350 2559472 - 2560329 756 285 aa, chain + ## HITS:1 COG:no KEGG:SSPA1010 NR:ns ## KEGG: SSPA1010 # Name: not_defined # Def: hydrogenase-1 operon protein HyaF # Organism: S.enterica_Paratyphi_AKU12601 # Pathway: not_defined # 1 281 1 281 282 423 77.0 1e-117 MSESFFHLLGPGTQPGDDSFSMNPLPLTCRVNSDPSMATLENCPHSPAVMALLADVRHQL TQRIPTKQDVLGWDLSALSADDLTFLNTLLGEGEVSVRIQHADGRASEMQESIFCGIWRV RCQNDEGQWEEHLEAGSAPRALWQAATLNTLPDDTLLPPPIDGLMNGLTLAQELLAHVRD PATLPHSINLTQLPLSNADRLFLARLCGEGRIQIRTIGYGESQIDATALRHVWHVRCLDT LKGPLLESYEICPLPELVLAAPEDLLDSLERLDEVCDWLASGPPA >gi|283548478|gb|GG730299.1| GENE 2351 2560420 - 2561964 1739 514 aa, chain + ## HITS:1 COG:STM1792 KEGG:ns NR:ns ## COG: STM1792 COG1271 # Protein_GI_number: 16765133 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Salmonella typhimurium LT2 # 1 504 1 504 514 911 93.0 0 MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETLFVVTGKTVYRDMTRFWGKLFG INFALGVATGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQR LNKYQHLLVTWLVAFGSNISALWILNANGWMQYPTGARFNIDTLRMEMSSFSELVFNPVS QVKFVHTVMSGYVAGAMFVMSISAWYLLRGRCREFALRSFAIGSVFGTLAILGTLQLGDS SAYEVAQLQPVKLAAMEGEWQTEPAPAPFHVIAWPQQEQERNAFSVKIPALLGILATHSL DTPVPGLKNLMADALPRLQRGREAWLLLQEIAKGNRTPQALKAFHAVENDLGYGILLANY APDMNHVTPAQYQAAQRGAIPQVAPVFWSFRIMIGCGSLLLLVLAIALIQTLRMRIDQHR WVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALSAGQLAFSMGLILT LYTLFLIAEVYLMQKYARLGPDAMQSQQPAQQQG >gi|283548478|gb|GG730299.1| GENE 2352 2561976 - 2563112 1026 378 aa, chain + ## HITS:1 COG:STM1793 KEGG:ns NR:ns ## COG: STM1793 COG1294 # Protein_GI_number: 16765134 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Salmonella typhimurium LT2 # 1 378 1 378 378 564 87.0 1e-161 MLDYETLRLIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARSEDERRVLINSVGAHWEGN QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRRIWD TGLVIGSLVPPVIFGIAFGNLFLGVPFIFTPQLHVQYLGSFWELLSPFALLCGALSLMLV ILQGGVWLQLKTDGVIRQRALSATSRSAMLVVLCFLLAGYWLWTGIDGFVLLSQDPNGPS NPLLKAVAILPGAWMAHFYQSPLLLIIPLLGMIFPILALYACTQRRTVWGFLFASLTQAC VIFTAGITLFPFVMPSGAHPLSSLTVWDSTSSQMTLSIMLVIVLIFLPIVLLYTVWSYYK MLGRINVETIRRHNHELY >gi|283548478|gb|GG730299.1| GENE 2353 2563125 - 2563214 175 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWYLFWFVGILLMCALSTLALVWLESRQK >gi|283548478|gb|GG730299.1| GENE 2354 2563346 - 2563738 377 130 aa, chain + ## HITS:1 COG:SMc00812 KEGG:ns NR:ns ## COG: SMc00812 COG0346 # Protein_GI_number: 15964510 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Sinorhizobium meliloti # 1 128 1 126 127 90 44.0 6e-19 MFSYIMLGTNDLPRAIQFYDPLMEMLGQPQAGRNEEGASWGTFNDNHTVGLCIGSPFDSQ PASVGNGTMVALKARSVEHIEQLYALALSLGGADEGAPGHRPQYGQGFYSAYVRDPDGNK LAFVYYAPVA >gi|283548478|gb|GG730299.1| GENE 2355 2563923 - 2564273 336 116 aa, chain - ## HITS:1 COG:STM4071 KEGG:ns NR:ns ## COG: STM4071 COG1917 # Protein_GI_number: 16767337 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Salmonella typhimurium LT2 # 29 116 1 88 88 135 70.0 2e-32 MIKSNEAQHEYRFGDSGPKYLIRGPVCDMGVVMLQPGQSFPNHRHIEACEIFYTLAGEVT LYLNGEPYTLGSGDVLHCDPGEAHFLVNRGEVPWKGVFVKSPHIPGDSHPVEPTAY >gi|283548478|gb|GG730299.1| GENE 2356 2564286 - 2565878 1425 530 aa, chain - ## HITS:1 COG:ydeV KEGG:ns NR:ns ## COG: ydeV COG1070 # Protein_GI_number: 16129470 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 530 1 530 530 979 89.0 0 MARLCTPSESTHYLMALDAGTGSVRAVIFDLEGKQIAVGQAEWRHLAVPDVPGSMEFDLG KNWQLACECIRQALHNAGIAPEAIAAVSACSMREGIVVYDAEGTPVWACANVDARAAREV SELKEIHDYTFESEVYRSTGQTLALSAIPRLLWLAHHRSDIYRRASTVTMISDWMAYMLS GELAVDPSNAGTTGLLDLKTRDWKPSLLQMAGLRSDILSPVKETGTMLGRVTAQAAAQCG LKAGTPVVVGGGDVQLGCLGLGVVRPAQTAVLGGTFWQQVVNLPAPIVDPEMNVRVNPHV IPGMVQTESISFFTGLTMRWFRDAFCAEEKLIAERLGVDTYTLLEDMASRVPAGAWGVMP IFSDRMRFKSWYHAAPSFINLSIDPEKCNKATLFRALEENAAIVSTCNLQQIADFTGIHP ASLVFAGGGSKGKLWSQILADVSGLTVNVPVVKEATALGCAIAAGVGAGIWSSMAETGER LVRWEREHVPDKEKHELYRESREKWQAVYQEQLGLVDHGLTNSLWKAPGL >gi|283548478|gb|GG730299.1| GENE 2357 2565986 - 2566942 995 318 aa, chain - ## HITS:1 COG:ECs2119 KEGG:ns NR:ns ## COG: ECs2119 COG2390 # Protein_GI_number: 15831373 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Escherichia coli O157:H7 # 1 315 1 315 317 501 83.0 1e-142 MTINDPMISEQGMCEEELVARIAWFYYHDGMTQSDISNRLGLTRLKVSRLLEKGHQSGII RVQINSRFEGCLEYETELRRRFDLSNVRVIPGLPGADACIRLGIGAAHMLMESLQPQQIL AAGFGEAAMNTLKRLSGFISAQQIRLVTLSGGVGPYMTGIGQLNAACPVSIIPAPLRASS AEIARTLKNENSVQDVLLAAQAADAAIVGIGAINQKDEATIIRSGYITKGEQLMIGRKGA VGDILGYFFDAEGQVIPDMKIHDELIGLTLNTLKTIPTVIGVAGGVNKAEAIAAAMKGGY INALVTDQETAAAIVSGQ >gi|283548478|gb|GG730299.1| GENE 2358 2567198 - 2568745 224 515 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 258 477 2 219 312 90 29 2e-16 MSHEKIAPLLSAQAVCKQYSGVKVLKGIDFVLRKGEVHALLGGNGAGKSTLMKIIAGITP ADSGSIEIEGSRCTKLTPILAHQLGIYLVPQEPLLFPSLTVKENVLFGLPKHQSSTQKMS AMLGALGCQFDINSPAGSLDVADRQMVEIMRGLMRDSRILILDEPTASLTPAETDRLFSR LRELLSTGVGIVFISHKLPEIRQIADYISVMRDGTIALSGKTADLTTDEIIQAITPASRT NALSATQKLWLELPGNRPQHDAGTPVLSLENLTGEGFMNVSFEVRAGEILGLAGLVGAGR TELAETLYGLRPLRAGRILLGGKDISALSTRERLQSGLVYLPEDRQSSGLNLDASLAWNV CALTHNHSGFWANPAKDSATLERYRRALNIKLNDPEQPARTLSGGNQQKILIAKCLEASP QVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLFISSDLEEIEQMADRVYVMHQGETG TDALQGDEINVDTIMHVAFGDSTSGTTPHTGEAPC >gi|283548478|gb|GG730299.1| GENE 2359 2568739 - 2569788 1336 349 aa, chain + ## HITS:1 COG:STM4075 KEGG:ns NR:ns ## COG: STM4075 COG1172 # Protein_GI_number: 16767341 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 349 1 347 347 483 85.0 1e-136 MLKFIQNNREATALLAVLLLFVLPGMLDSQYLSVQTLTMIFSSAQILMLLAMGATLVMLT RNIDVSVGSITGMCAVLLGLLLNAGYPLPVACVATLLLGLLAGFINGVLVAWLKIPAIVA TLGTLGLYRGVMLLWTGGKWIEGLPAQLKQLSAPVFLGISAIGWLTLLLMLLMAWLLAKT AFGRCFYATGDNLQGARQLGVRTEAIRILAFSLNGCMAALAGIVFASQIGFIPNQTGTGL EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLAV LVFDGRLRCALERNIRRQKYARFTPQPQPRPSAKSAADTVRTAKKREVA >gi|283548478|gb|GG730299.1| GENE 2360 2569788 - 2570786 1198 332 aa, chain + ## HITS:1 COG:STM4076 KEGG:ns NR:ns ## COG: STM4076 COG1172 # Protein_GI_number: 16767342 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 332 2 333 333 474 84.0 1e-133 MTHLHRYGWELALAALLVIEILGFGALNPRLLDLNVLLFSTSDFICIGIVALPLTMVIVS GGIDISFGSTMGLCAIALGVMFQGGVPLPLAIILTLALGTLCGLINAGLIIYTGVNPLVI TLGTLYLFGGSALLLSGMAGATGYEGIGGFPQGFTDFANLDVLGLPVPLIFFLVCVLFFW LLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLYALYAMTGFASAVAAVLLVSYFGSARS DLGASFLMPAITAVVLGGANIYGGSGSILGTAIAALLVGYLQQGLQMAGVPNQISSALSG ALLIVVVVGRSVSLHRQQIKDWMARRRAVRQA >gi|283548478|gb|GG730299.1| GENE 2361 2570813 - 2571835 1162 340 aa, chain + ## HITS:1 COG:yneA KEGG:ns NR:ns ## COG: yneA COG1879 # Protein_GI_number: 16129475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 340 1 340 340 579 88.0 1e-165 MTIQSIKKIAVISTLSLAAFTLNAYAAERIAFIPKLVGVGFFTSGGNGALEAGKALGVDV TYDGPTEPSVSGQVQLINNFVNQGYNAIVVSAVSPDGLCPALKRAMQRGVKVLTWDSDTK PECRSYYINQGTPAQLGGMLVDMAANQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKITK DHPGWEVVTTQFGYNDATKSLQTAEGIIKAYADLDVIIAPDANALPAAAQAAENLKNTSV AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGDMSTGDKLDIPGVG QVEVSPNSVQGYSYEAKGNGIVLLPERVVFTKENIDKYDF >gi|283548478|gb|GG730299.1| GENE 2362 2571864 - 2572739 856 291 aa, chain + ## HITS:1 COG:yneB KEGG:ns NR:ns ## COG: yneB COG1830 # Protein_GI_number: 16129476 # Func_class: G Carbohydrate transport and metabolism # Function: DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes # Organism: Escherichia coli K12 # 1 290 1 290 291 561 93.0 1e-160 MADLDDIKDGKDFHTDTPQRNTPFTLKGCGALDWGMQSRLSRIFNPETGRTVMLAFDHGY FQGPTTGLERIDINIAPLFPLADVLMCTRGILRSVVPPATNKPVVLRASGANSILTELSN EAVALSIDDAVRLNSCAVAAQVYIGSENEHQSIKNIIQLIDAGIKVGMPTMAVTGVGKDM VRDQRYFSLATRIAAEMGAQIIKTYYVDKGFERIAAGCPVPIVIAGGKKLPEREALEMCW QAIDQGASGVDMGRNIFQSDHPVAMMKAVHAVVHRNETAERAYELYLSEKN >gi|283548478|gb|GG730299.1| GENE 2363 2572790 - 2573080 310 96 aa, chain + ## HITS:1 COG:ECs2125 KEGG:ns NR:ns ## COG: ECs2125 COG1359 # Protein_GI_number: 15831379 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 96 1 96 96 169 89.0 9e-43 MHVTLVEINVHEDKVDEFIDVFRLNHLGSVQEEGNLRFDVLQDPEVKSRFYIYEAYKDEA AVAFHKTTPHYLACVEKLESLMSCPRKKRVFNGLMP >gi|283548478|gb|GG730299.1| GENE 2364 2573091 - 2573834 317 247 aa, chain + ## HITS:1 COG:STM4080 KEGG:ns NR:ns ## COG: STM4080 COG0036 # Protein_GI_number: 16767346 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Salmonella typhimurium LT2 # 1 239 1 237 254 317 62.0 1e-86 MNRSFSGLHRAECVSLLKRYPLSIGILAGQWLKLGEYLQDLRALEQPVLHLDLMDGHFCP QFTVGPWAIAQLPQQMIKDVHLMVDNPWPVVQASVKAGAHCVTLQVENTPHLHHMLHWLG EQNAEVSGGKMPVLRGISLCPATPLEHILPVIEDVEIVQILAVNPGYGSKLSRSALLRRI AQVVALLNAAGKRDAILLTVDGSLNLEELPEIIASGVDRVVSGSALFRNDALADNISRWL TTIHSAK >gi|283548478|gb|GG730299.1| GENE 2365 2573812 - 2574027 87 71 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVAIMKMNKTRERFMPFIAPLCCRTLPLHDLLPVDIQAFYQGSVELNGEWQIVGALVTKE NVVVLISLNEL >gi|283548478|gb|GG730299.1| GENE 2366 2574213 - 2575334 754 373 aa, chain + ## HITS:1 COG:sgcX KEGG:ns NR:ns ## COG: sgcX COG1363 # Protein_GI_number: 16132126 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Escherichia coli K12 # 1 373 11 383 383 739 96.0 0 MSFSVQETLFSLLQHNAISGHENAVAEVMLREFRRQAKEVWRDRLGNVVARYGSDKPDAL RLMIFAHMDEVGFMVRKIEPSGFLRFERVGGPAQVTMSGSVVTLAGDNGPVMGCIGIKSY HFAKGDERTQSPAVDKLWIDIGAKDKDDAIRMGIQVGTPVTLYNPPQLLANDLVCSKALD DRLGCTALLGVADAIGTAELDIAVYLVASVQEEFNIRGIVPVLRRVKPDLAIGIDITPSC DTPDLHDYSEVRVNQGVGVTCLNYHGRGTLAGLITPPRLIRMLEQTALEHNIPVQREVAP GVITETGYIQVEQDGIPCASLSIPCRYTHSPAEVASLRDLADCIRLLTALAGMPAAHFPV EPDSGATQEAHPL >gi|283548478|gb|GG730299.1| GENE 2367 2575331 - 2575609 273 92 aa, chain + ## HITS:1 COG:STM1613 KEGG:ns NR:ns ## COG: STM1613 COG3414 # Protein_GI_number: 16764957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Salmonella typhimurium LT2 # 1 92 2 93 93 147 93.0 5e-36 MKKILVACGTGMSTSTMIAHKLQAFLTEQGIAATTAQCCLNEIPLNCNGMDLLVTSMRTN SDYGIPTLNGAALLTGINDDALKQQIKALLTQ >gi|283548478|gb|GG730299.1| GENE 2368 2575621 - 2576934 1397 437 aa, chain + ## HITS:1 COG:sgcC KEGG:ns NR:ns ## COG: sgcC COG3775 # Protein_GI_number: 16132125 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIC component # Organism: Escherichia coli K12 # 1 437 1 437 437 699 99.0 0 MFDYILSLGGTVFVPIIMIVIGLIFRIPWLQAIKAGVTVGIGFVGMGLVIVMAIDSLSPP IKVMIERFGLTLHVFDVGAGPASGVGYATAIGAMIIPVIFLLNVAMLVTRLTKTMNVDIY NYWHYAITGTVVQLMTGSLIYGVLGAICHAALSLKMADWTAKRVQNIVGLEGISIPQGYG SSSVPLFVLLDAIYEKIPFMKGRNIDAQEIQKRYGMVGDPVIIGVVLGLIFGLAAGEDFK GCASLMITVAAIMVLFPRMIRLIVEGLMPISDGARKFFQKYFKGREVYIGLDTAVTLGHP TTIAVGLLLIPIMLILASILPGNKVLPLADLPVAPFFICMATVIHRGDLIRTLISGVIVM ITVLLIATQFAPYFTEMALKGGFSFAGESAQISALSVGNMFGWSISELMSLGIIGVVVAV GIVASVVLFLRKRELSE >gi|283548478|gb|GG730299.1| GENE 2369 2576947 - 2577753 878 268 aa, chain + ## HITS:1 COG:sgcQ KEGG:ns NR:ns ## COG: sgcQ COG0434 # Protein_GI_number: 16132124 # Func_class: R General function prediction only # Function: Predicted TIM-barrel enzyme # Organism: Escherichia coli K12 # 1 268 1 268 268 543 97.0 1e-154 MSWLKEVIGTEKAVIAMCHLRALPGDPGFDAQLGMNWVIDKAWEDLMALQNGGVDAVMFS NEFSLPYLTKVRPETTAAMARIIGQLMSDIRIPFGVNVLWDPIASFDLAMATGAKFIREI FTGAYASDFGVWDTNVGETIRHQHRIGAGAVKTLFNIVPEAAVYLGNRDICSIAKSTVFN NHPDALCVSGLTAGARTDSALLKRVKETVPDTVVLANTGVCLENVEEQLSIADGCVTATT FKKDGVFANFVDQARVSQFMEKVHHIRQ >gi|283548478|gb|GG730299.1| GENE 2370 2577884 - 2578315 331 143 aa, chain + ## HITS:1 COG:sgcA KEGG:ns NR:ns ## COG: sgcA COG1762 # Protein_GI_number: 16132123 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1 143 1 143 143 276 97.0 1e-74 MINDIKWVQAQREATDWRQAVEIATRPLVAYGAAQPCYVNGIIENTLNWGPYYLIAPGIA LPHARPEQGANYNQVSITTLRTPVAFGHEECDPVWLLLCVSATDANAHILTIQRISQFID SPQRLAAVRNASTDDALFALVSG >gi|283548478|gb|GG730299.1| GENE 2371 2578327 - 2578959 539 210 aa, chain + ## HITS:1 COG:sgcE KEGG:ns NR:ns ## COG: sgcE COG0036 # Protein_GI_number: 16132122 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Escherichia coli K12 # 1 210 1 210 210 379 94.0 1e-105 MILHPSLASANPLHYGRELTALDNLGFGTLHLDIEDSSFINNITFGMKTVQAVARQTPHP LSFHFMVARPQLWFNALAEIRPAWIFVHAETLDYPSETLAEIRHTGARAGLAFNPATPID AWRYLAPELDGLMVMTSEPDGQEQRFIPSMCEKIRKVRTAFPQTECWADGGITLVAAQQL AAAGAQHMVIGRALFSSSDYRATLAQFATL >gi|283548478|gb|GG730299.1| GENE 2372 2578976 - 2579758 507 260 aa, chain + ## HITS:1 COG:sgcR KEGG:ns NR:ns ## COG: sgcR COG1349 # Protein_GI_number: 16132121 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli K12 # 1 260 1 260 260 531 98.0 1e-151 MSQQRPDRIKQMLHYLWQHRHLSTQQAMELFGYAEATVRRDFQYIANQYPGMIRGHGCLD FDASTDDKEYVFDVKRTLQSVAKREIAALARTMIKDGDCFFLDSGSTCLELAKCLADARV KVICNDIKIANELGCFPHVESYIIGGLIRPGYFSVGESLALEMINAFSVERAFISCDALS LETGITNATMFEVGVKTRIIQRSREVILLADHSKFDAVEPHAVATLSCIKTIISDSGLPE TIAQRYQRAGCQLFLPHSIK >gi|283548478|gb|GG730299.1| GENE 2373 2580059 - 2580847 570 262 aa, chain + ## HITS:1 COG:yjhI KEGG:ns NR:ns ## COG: yjhI COG1414 # Protein_GI_number: 16132120 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 262 1 262 262 521 97.0 1e-148 MVRKGCNSLVRAEKILTHIAWVGVASYMELLNKFQYPKSSLLNLLEVMVECGFLIKNKNG HYSLGIKNYELGCQALHRQNIFEVTKRPMQELSLKSGLVCHLGAMESISAIYLDKIESPD SVPTRKSWIGKKLELHITALGKALLAWKTREELDYFLEALTLTPHTRNTFTDKKLFLEEL QKTRLRGWAIDNEESTYGAVCLSMPVFNMYNRVNYAISLSGDPVVYSGNKIDSYLELLRK CAGQISYGLGYRNENEHLRKGN >gi|283548478|gb|GG730299.1| GENE 2374 2580798 - 2581757 814 319 aa, chain + ## HITS:1 COG:yjhH KEGG:ns NR:ns ## COG: yjhH COG0329 # Protein_GI_number: 16132119 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli K12 # 1 319 1 319 319 628 96.0 1e-180 MGWDTETKMSIYEKETEVMKKFSGIIPPVSSTFHRDGTLDKTAMREVADFLINKGVDGLF YLGTGGEFSQMNTAQRMALAEEAVTIVDGRVPVLIGVGSPSTDEAVKLAQHAQACGAEGI VAINPYYWKVAPRNLDDYYQQIARSVTLPVILYNFPDLTGQDLTPETVKRLALQNENIVG IKDTIDSVGHLRTMINAVKSVRPSFSVFCGYDDHLLNTMLLGGDGAITASANFAPELSVG IYRAWREGDLATAATMNKKLLQLPAIYALETPFVSLIKYSMQCVGLPVETYCLPPILEAS EEAKEKVRALLTAQGILPV >gi|283548478|gb|GG730299.1| GENE 2375 2581768 - 2583735 1786 655 aa, chain + ## HITS:1 COG:yjhG KEGG:ns NR:ns ## COG: yjhG COG0129 # Protein_GI_number: 16132118 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Escherichia coli K12 # 1 655 1 655 655 1291 98.0 0 MSVRNIFADESHAIYTVRTHADGPDGELPLTAEMLINRPSGDLFGMTMNAGMGWSPDELD RDGILLLSTLGGLRGADGKPVALALHQGHYELDIQMKAAAEVIKANHALPYAVYVSDPCD GRTQGTTGMFDSLPYRNDASMVMRRLIRSLPGAKAVIGVASCDKGLPATMMALAAQHDIA TVLVPGGATLPAKDGEDNGKVQTIGARFANGELSLQGARRAGCKACASSGGGCQFLGTAG TSQVVAEGLGLAIPHSALAPSGEPVWQEIARASARAALNLCNKGITTREILTDKAIENAM TVHAAFGGSTNLLLHIPAIAHQAGCHIPSVDDWIRINKRVPRLVSVLPNGPVYHPTVNAF MAGGVPEVMLHLRSLGLLHEDVMTVTGSTLKENLDWWEHSERRQRFKQLLLDQEQINADE VIMSPQQAQARGLTSTITFPVGNIAPEGSVIKSTAIDPSVIDEQGIYYHKGVAKVYLSEK SAIYDIKHDKIKAGDILVIIGVGPSGTGMEETYQVTSALKHLSYGKHVSLITDARFSGVS TGACIGHVGPEALAGGPIGKLRTGDIIEIKIDCRELHGEVNFLGTRSDEQLPSQEEATAI LNARPSHQDLLPDPELPDDTRLWAMLQAVSGGTWTGCIYDVNKISAALRDYMNKN >gi|283548478|gb|GG730299.1| GENE 2376 2583842 - 2585191 1038 449 aa, chain + ## HITS:1 COG:yjhF KEGG:ns NR:ns ## COG: yjhF COG2610 # Protein_GI_number: 16132117 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1 449 1 449 449 687 97.0 0 MPLIIVVAGIALLLLLTIRIKLNTFVSLIIVSIAVAIASGMDLSKVVTSVESGLGGTLGH IGLIFGFGVMLGRLLADAGGAQRIALTMLNYFGQKKLDWAVVCSAFIVGIALFFEVGLIL LVPILFAIAREAKVSPMFMCVPMLSGLLVAHGFLPPHPGPTVIAREYGADVGLVLIYGII VGIPTFIICGPILNKFCQRIIPDAFKKEGNIASLGAPRRFSESEMPGFRISFLTAMLPVI LMAVVTIIQMTHAKSAADSGLFYNVILFLGNSTIAMLISLLFAIYTMGLGRGKTIPDLMD SCGKAIAGIAGLLLIIGGGGAFKQVLIDSGVGQYISTLVSGMDINPILMAWGVAAFLRIC LGSATVAAISTAGLVIPLLAVHPNTNLALITLATGAGSCICSHVNDASFWMIKDFFGLTT KETLLSWTLMSTLLSICGLVFILLASLVL >gi|283548478|gb|GG730299.1| GENE 2377 2585422 - 2586708 305 428 aa, chain - ## HITS:1 COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 424 1 428 433 322 45.0 1e-87 MVMVQFFIVLIFLYIGMRVGGIGVGFAGGAGVLVLGILGAKPGNMPMLVIVFIMVVIIAI SAMQEAGGIDYLVRLTERLLRRYPRLLVVTAPISTWLLTMMASTGQVSFACMPVIVGVAK ENNIKPTRALALSVSASLLGIVASPISAAVIFFSGILEKNNHGWGYIELISVSIPATFFA LLFASFFYLCWDRFKQQDQLNNQPYIKEESIHQEVLPGARRAVLIFIIGLVVVLVYAIVA SPKLGIISHPVMNSGQVRIGVMMGVALLIVACCRVNVHKISSTSVFKTGMTSCICILGVA WLGSTFMDNNQQWLQAMVSGYLLHSPWLLALVIMLVSCFLYSQAASTQILFPAALSMGVA PGILVACFPATASLFILPNYPTLLAAVELDDTGSTHLGNKIIDHPFLLPGLITTLLSIAF AFALSLLI >gi|283548478|gb|GG730299.1| GENE 2378 2586833 - 2587678 437 281 aa, chain - ## HITS:1 COG:STM0331 KEGG:ns NR:ns ## COG: STM0331 COG0179 # Protein_GI_number: 16763711 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Salmonella typhimurium LT2 # 1 274 1 275 292 343 59.0 3e-94 MRLLSFNVNGKEKYGLVAPEGIIDLQKFFPQYSDLRALIPHLNEINLQLLGEGKIDYTFA EIRFLPVIPNPKKIICAGMNYKKKRDEVNDKKSDPTLFIRFEDSQTGHLTGLKKPECSNE FDYEGELALVIGHAGSHIPEAEALDYVAGYSCYMDGSVRDWQHTWFTAGKNWPCTGGFGP WLITADEIPNPQNLDIVTRLNGRTVQHDNTHSMVHSIAELISYISTFSPLSPGDVILTGS PNGAGKNRIPPLFMQSGDVVEVEIERIGCLTNSVISDKSSN >gi|283548478|gb|GG730299.1| GENE 2379 2587758 - 2589155 509 465 aa, chain - ## HITS:1 COG:AGpA571 KEGG:ns NR:ns ## COG: AGpA571 COG0477 # Protein_GI_number: 16119622 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 465 19 461 461 489 60.0 1e-138 MSTLVLNTCDSAADTSISPAQLVARIERLPVTRKLIFIRIVTGISTFFDSYTVLAIAFAM PELIAEWHLTPFFVGLIIAASYAGQLVGAIAFGSLAEKIGRLSVLKITILMFVTMSAACL FSWNGWSLMAIRFLQGIGIGAEVPVASAYINEFIGSKKRGRFFLLYEVIFPVGLMFAGIA GYFLVPMYGWKAMFWVGLIPPLIAMPLRWLMPESPRWLISKGRMSEANQVISSLEHEVIR SGRVLDTPQITVFSFPANKGKGGWKELFSGIYLKRTLMLWGLWLSAYLVNNGMITWLPTL YRSAFHLSVPQSLVYGWITSAAGVVASVTCALLIDKVGRKRWYSAAFCLAALALGILGLS GASGAFQVLIFASLAYAIMQTVTFSLYLYSAELYPTRLRTIGTGLGSAWLRAGSSLGTLL VGVIVAHYGVRYVFDLFGIIALSGGVITILFAIETKDAILEVLSP >gi|283548478|gb|GG730299.1| GENE 2380 2589419 - 2590348 731 309 aa, chain - ## HITS:1 COG:AGpA569 KEGG:ns NR:ns ## COG: AGpA569 COG0329 # Protein_GI_number: 16119621 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 308 1 305 313 393 64.0 1e-109 MINIDLRGLTPAPVTPFTREGKIDFDAIQRLGSWLGSIDGVKGLVVLGHAGEGTFLTQKE QADVIRAFVKSVDGKLPIIAGITGEGTEVAALEAKRAVEAGASAGLLYPSHGWLRFGYQK GAAQDRYRVVYEESGLPLILFQYPDNTKATYDLQTLLDISAQPGVFAMKNGVRNMRRWDT EIPVIRRERPDLQILSCHDEYLLHTAFDVDGFLVGYGNIAPEPLIEMIKAGKAGDYVKAR QIHDRLLPVTKSVYHRGSHMEGTVALKHALVARGILEHATVRSPLLPLENGAEKEIHDAI RAAELARVN >gi|283548478|gb|GG730299.1| GENE 2381 2590597 - 2591628 486 343 aa, chain - ## HITS:1 COG:AGpA567 KEGG:ns NR:ns ## COG: AGpA567 COG1609 # Protein_GI_number: 16119620 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 17 338 29 352 357 328 55.0 1e-89 MDHESGHNDLSEKKLATMRDVARVAGVSVSTVSRILDERLPASRSASAEKVRQVANELGY RRDYVASSLRRGDTGTLGVLVPRLTDAVTAMLFEEIARAAARRGYFAIVATCGDSQEHER IAVESLLDRRVDGLIMSTCRLDDPLPQDLRERNIPHVLALRTDGFSPSSIGDDELGGYLA TRHLIDLGHKDIGLIGGPDFASSARNRRTGFERAMKEAGLIIRPEWCRTSDFSISSGELQ GAAILSQSQRPSALFAVNDELAIGVLAAAHHQGIVIGKDLSLVGYNDIPLVSRLPVALTS VKTPLEHIASNAVDMLLNPDSKHNQRIATPSLIPRRSTLPPHK >gi|283548478|gb|GG730299.1| GENE 2382 2592086 - 2592283 87 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283834406|ref|ZP_06354147.1| ## NR: gi|283834406|ref|ZP_06354147.1| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase [Citrobacter youngae ATCC 29220] 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase [Citrobacter youngae ATCC 29220] # 1 65 1 65 65 103 100.0 6e-21 MVIQTIAAKYVVASRSVPLLTILLAKLELCPITQRSTTLGPPTFLNAYTIPALEIKGRRV EGRSP >gi|283548478|gb|GG730299.1| GENE 2383 2592437 - 2593780 683 447 aa, chain + ## HITS:1 COG:PA2291 KEGG:ns NR:ns ## COG: PA2291 COG3659 # Protein_GI_number: 15597487 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Carbohydrate-selective porin # Organism: Pseudomonas aeruginosa # 7 447 15 452 452 375 43.0 1e-104 MKRIFFGGLLTLIALLVTDLAYADSPPFSATGQYMTGDWGGTRTSLKKLGYNFTLDYSSM MAANLAGGYDKDKTARYSDQFTFGADLNLEKILGISDGEFKTSLIDRNGRDLTQDRLQDP RAPVMGSGVQSNYGRGQTWHVEQFWYRQSWWKHALDIKLGLMPVGEDFDNNGCFFQNLSL CGALAGHGSGVWYNTPIGQWGTRLKYSIMPTLYAQVGAFQYNPNYATRHGSFELDGTGHQ GYMYVAEIGYLPTFGPAALSGAWKAGAWYNTADANDVLDDDNGDPYVLSKNAPLQHNGRY GGYIYLLQQVTGTGKGTPRGLSLFWHLAINDRDTATMDYQTQLGAVYKGPFSGRPLDFIG LGVSKMHANSRLAHKAQLLNQEKGINDYDDPAYTPVRHSEYVTELNYSLKLTPWFTLRPN LQFLVHPGGVEEIKNAWVVGSQVAIRF >gi|283548478|gb|GG730299.1| GENE 2384 2594156 - 2594302 61 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQLTEQTETASGTLCLYSNSIYNFMYQPNSKHCPSVKTFPTSGHKEAD >gi|283548478|gb|GG730299.1| GENE 2385 2594342 - 2595106 279 254 aa, chain - ## HITS:1 COG:jhp1494 KEGG:ns NR:ns ## COG: jhp1494 COG4735 # Protein_GI_number: 15612559 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Helicobacter pylori J99 # 1 251 1 250 253 246 49.0 3e-65 MAYRYDEDLEFLSKCSDEDLKGLVDCLIYDKDYETRWTEELSSNENYKKYKPQHSKYWRE IGGEIQCFGGNTFATMLRGGKGVKYREVLTDVCDKLKVNYNNKSSIENIEQCLMLKILND AFEKMSSEELKEFAREIGVKNLDGLTAKALVSAFQIIFKAGGFKSYKLTLIIANAILKAL IGRGLSFGGNIILTRAMAVLTGPIGWAITAIWTLVDIGGTAYRVTIPAVIQVAALRSKIA NAGSEDLAAEITLD >gi|283548478|gb|GG730299.1| GENE 2386 2595120 - 2595545 182 141 aa, chain - ## HITS:1 COG:no KEGG:Sputcn32_2913 NR:ns ## KEGG: Sputcn32_2913 # Name: not_defined # Def: XRE family transcriptional regulator # Organism: S.putrefaciens # Pathway: not_defined # 1 117 13 128 140 71 37.0 9e-12 MRDIREEKGVTQAEIAEKLGMTSAGWGKVENGKSTLSVENLMKFCKLVDIDAQKILTISQ KTAKDLIQNGWAVSYSQVENDGLIEARGFSALANSKVDSGLQKAIKEGVDKSIADNAKNN ILKYASIYASISNMLPIKFKR >gi|283548478|gb|GG730299.1| GENE 2387 2596127 - 2596237 59 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVLLGVCVKIEKIKILLNHDDFWSGIVPLIPNTTD >gi|283548478|gb|GG730299.1| GENE 2388 2596286 - 2596474 85 62 aa, chain - ## HITS:1 COG:no KEGG:KPK_A0087 NR:ns ## KEGG: KPK_A0087 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 62 1 62 62 67 56.0 2e-10 MLKPEVIESAIAEMATQQGVTLNAADKLELRCRVAGTLAAKERHRQRMTAQEYHWRKPSP RR >gi|283548478|gb|GG730299.1| GENE 2389 2596754 - 2597065 105 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085823|ref|ZP_06354152.2| ## NR: gi|291085823|ref|ZP_06354152.2| hypothetical protein CIT292_08582 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_08582 [Citrobacter youngae ATCC 29220] # 1 103 11 113 113 215 100.0 9e-55 MLIAAIQPVLAANYCRADIFMGRASFCEGEAEVKNFPVRQDSGEYHDCDIFMGNVSNCRG SSNRKLWPVRQPDGTYENCNIFMGKARFCQGESDVKAFPIERN >gi|283548478|gb|GG730299.1| GENE 2390 2597081 - 2597653 241 190 aa, chain - ## HITS:1 COG:no KEGG:SBO_3738 NR:ns ## KEGG: SBO_3738 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii # Pathway: not_defined # 5 171 6 190 213 101 33.0 1e-20 MSDGVIVEFSESPMWDRNIAIHEAGHAMAAWFTGARQIEISIADEFRIARLANGKEVDDC RAVCSHLPARKDELAQMVVSFSGVMAQHLYSGEPPEKLLENGGKGDASDIRKVLEQYRNQ GATGDDCDKLYSRAYLISLKLVKHYWWEIIALAKMVEHYNYVAPNKVSSMLSYFVSTQHI CCSLEDLESE >gi|283548478|gb|GG730299.1| GENE 2391 2597717 - 2597896 151 59 aa, chain - ## HITS:1 COG:no KEGG:E2348C_3896 NR:ns ## KEGG: E2348C_3896 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 1 58 32 89 89 77 74.0 1e-13 MKKPNVKPVLLSGDQFAAICKIQERERQRSDIGVAPSVHQIARGLVAKALESIAVEGSV >gi|283548478|gb|GG730299.1| GENE 2392 2597877 - 2598065 325 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085825|ref|ZP_06354155.2| ## NR: gi|291085825|ref|ZP_06354155.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 62 3 64 64 79 100.0 7e-14 MAIYDQKLAAGNPQSAGRKLFGREQAEQLRMRNNFNNECRNLEKANEANAKFWSEQDEKA KR >gi|283548478|gb|GG730299.1| GENE 2393 2598078 - 2598641 385 187 aa, chain - ## HITS:1 COG:no KEGG:E2348C_3895 NR:ns ## KEGG: E2348C_3895 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_0127 # Pathway: not_defined # 20 185 16 181 183 252 81.0 7e-66 MKQIANVNLESDSAGGTVEVTYSDDSFERLTCSLPVALVIANLATTLKQERATRIATGDR LRRMYTRDSDMITRSGSGASPTSTAPTAMNAEFMRLVRAVAPKYDNALPDTDPRLVALDV LRYAPAEAFSAVHPTPMSEIQLDQAIDVLEQVGDYMKANNIEPKILTTGDAIRSINADNA SFWHRTK >gi|283548478|gb|GG730299.1| GENE 2394 2599772 - 2602453 1129 893 aa, chain - ## HITS:1 COG:Z1843 KEGG:ns NR:ns ## COG: Z1843 COG5519 # Protein_GI_number: 15801311 # Func_class: L Replication, recombination and repair # Function: Superfamily II helicase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 507 888 1 384 386 540 70.0 1e-153 MKDNFINDVRIKAAGHWQTIFERLGIPTNRSEGPCPACGGNTRYRFDDKDGRGTYFCSHC GAGTGLDLVMKVSQCGAREAAVMVAEVMALPLPEQKPAREKPQTDIVAKVAALAAKAVSG QSEYLTSKGLQRPFPLLADGSMLITLTNVAGAITGAQIIKPDGSKRLVAGTVKKGSFFVV NSAENTETVVISEGLATAISVLQLRQIATIIAAIDAGNLPAVAMAMRQRYPNAQIIIAAD NDQIGGSDGIEGVKVNTGKEAAEKAAKAVSGWVSMPPVDFKADWNDYHQQYGLEAATAAF NDSMYQPEGKKVGATLTAIDGGKKKNDIDDDLKPRVESRADGIHWITPKVDKDTGEIINT EAWLCSPLEIAGAGSDNARQRFLILRWDVPGNRGQVTRALPWEDIGDREGWRTLKNGGVS VTTKPSLRAILADWLQRTGSGKEWQISHTTGWHCGAYIMPDGDVIGEPEIPLLFSGRSAA AGGYTVSGTPESWRDSVARLALGNPSMMLGVAAALSAPLIGLVGADGFGVHLFEQSSAGK TTTANIASSLYGEPDALRLTWYGTALGIANEAEAHNDSLLPLDEVGQGSSAKDVATSAYT LFNGAGKLQGAKEGGNRELKRWRTVAISTGEMDIETFLSAGGLKVKAGQLVRLLNLPMEK SVSHHEYQNGKQHADALKEAYQTNHGAAGREWIKWLAGHQQEAKQAVKAAQERWRSLIPA DYGEQVHRVGERFAILEAALVLGMPVTGWGEQESRDAIQHGFNAWVKEFGTGNREHKQII EQAEAFLNAYGLSRFAPFPYSPADMPIRDLAGYRQKGEHDESPVVFYTFPAAFEKEIAQG FNAKQFARVLAGAGVLKPPASGRGYQRKSPRIDGRQINVYVLQLRPDEIEGEE >gi|283548478|gb|GG730299.1| GENE 2395 2602450 - 2602668 108 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834417|ref|ZP_06354158.1| ## NR: gi|283834417|ref|ZP_06354158.1| hypothetical bacteriophage protein [Citrobacter youngae ATCC 29220] hypothetical bacteriophage protein [Citrobacter youngae ATCC 29220] # 1 72 1 72 72 141 100.0 1e-32 MEKKLTGSPASGFARPVIRKGDKWKDKRGCLVTVESYRFNRVTFYRDGYSSPCVQSDLRF LTEFQPVGEVKP >gi|283548478|gb|GG730299.1| GENE 2396 2602671 - 2602967 224 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834418|ref|ZP_06354159.1| ## NR: gi|283834418|ref|ZP_06354159.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 98 1 98 98 180 100.0 4e-44 MNLYNDFVRTDFPDTDKSDLQMLSSRAECAADSILNGIAAVGKMMFYVGGAENGEYEPSA TDFRDIGGMLMELMPLARALSDTAANAEYQSRQMTKGK >gi|283548478|gb|GG730299.1| GENE 2397 2602964 - 2603836 496 290 aa, chain - ## HITS:1 COG:no KEGG:KPK_A0175 NR:ns ## KEGG: KPK_A0175 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 2 167 3 168 170 286 90.0 7e-76 MNLQTLTAKARELRGNIVKAVSTKGSRTMTPVYDRDEQRKLRERIQQTQPDWVLLWWDIS TVTGWRTSDVCNLRYSCVNWETGQATIIVAKQTKAAEARATRKGIEIVRQQRKDAARLAA DHIAYMKWDSIGCDELAADMNDEEQAIVFELVAKADVKHDTKQLPPGIIKRLRDRQERNL VEDDLVFSRSQIESNRCQYMEGSVTRQTIWRKLHDVMQWFTRFINAKLRLSAYSSRKIAA FNLMSAGGEQGLLVASEMLGHSNPAITRTYLQLGSKASAIQSRLAMEVTA >gi|283548478|gb|GG730299.1| GENE 2398 2603846 - 2604013 138 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834420|ref|ZP_06354161.1| ## NR: gi|283834420|ref|ZP_06354161.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 55 1 55 55 98 100.0 1e-19 MLNSFKVRGKGFNSHGSEVRFQYQVDAEHFLSATFIATSMAELAGLSDIRITYVS >gi|283548478|gb|GG730299.1| GENE 2399 2604006 - 2604329 167 107 aa, chain - ## HITS:1 COG:no KEGG:SbBS512_E4078 NR:ns ## KEGG: SbBS512_E4078 # Name: not_defined # Def: hypothetical protein # Organism: S.boydii_CDC3083-94 # Pathway: not_defined # 1 99 130 228 262 108 53.0 6e-23 MGAEQSAPVTLYAGYANPVQLTTLEIGVSGGGNFTQYKEAAIMATTLATPQTKFIWLIAA VRRDCSTIKAVIHHIAAHSEREARRTLVRDHVCFFAGRLPIAGADHA >gi|283548478|gb|GG730299.1| GENE 2400 2605102 - 2605308 149 68 aa, chain - ## HITS:1 COG:ECs3513 KEGG:ns NR:ns ## COG: ECs3513 COG3311 # Protein_GI_number: 15832767 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 68 1 68 68 85 60.0 3e-17 MSENARSFIRLAEVKRRTGYSKAWLYRLISQNRFPKPVKIGARSIAFVEGEIDAWISERI AESRGEVA >gi|283548478|gb|GG730299.1| GENE 2401 2605496 - 2606206 294 236 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085828|ref|ZP_06354165.2| ## NR: gi|291085828|ref|ZP_06354165.2| putative Z3947 protein [Citrobacter youngae ATCC 29220] putative Z3947 protein [Citrobacter youngae ATCC 29220] # 1 236 45 280 280 444 100.0 1e-123 MTRKIILFNGIKEDLANGISKDFLLKSLIHLSTRNDLILTGHDVIENSSIDEMWMFDFID LYADLHEQTPEVMNAINAMLKKHLEKNRINKIEGNSSSWDDSEYSTTLSNDLNLYTPLSD DYPGIKRFIRVDLNNNDEKIMRDFSEWLANERKINNEGDRSQKKTDNDLKKLCEYKVLPY IDLFLWGEITGITLTQFQLAQLLFPDEFEVDIKDRLRSVTRPKAMELLESRVDTFM >gi|283548478|gb|GG730299.1| GENE 2402 2606440 - 2607654 409 404 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 10 389 14 403 406 162 28 8e-38 MKLNARQVDTARPKEKPYKLSDGGGLYLLVNPNGSRYWRMKYRVSGKEKLLALGVYPEVT LADARAKRDEAKRGIAGGIDPNEAKREEKIAREANVRNTFKEIACEWHASKLYKWSDGYA SDIMEAFNKDVFPYIGKKPIAEIKPLELLNVLRRMEGRGATEKAKKVRQRCGEVFRYAIV TGRAEYNPAPDLTSAMQGHESRHYPFLNASELPAFFDALSSYSGSMLVVLAARLLIITGL RTGELRGATWQEIDADAAVWEIPAERMKMRRPHIVPLSSQAQAIIARIREMTGRYPHMFP GRNDPRKTMSEASINQVFKRIGYGGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN SIRGTYNHAQYLDGRREMLQWYADYMDALEHRENVIHGAFGKGA >gi|283548478|gb|GG730299.1| GENE 2403 2607741 - 2607935 69 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRYQRERYNAEYKGFLWTLVDVRRCLNGADNRSRTYDLRITNALLYQLSYIGPEKDMTTN VSTG >gi|283548478|gb|GG730299.1| GENE 2404 2608011 - 2609261 1546 416 aa, chain - ## HITS:1 COG:STM0322 KEGG:ns NR:ns ## COG: STM0322 COG0014 # Protein_GI_number: 16763704 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyl phosphate reductase # Organism: Salmonella typhimurium LT2 # 1 416 1 416 416 748 93.0 0 MLEQMGIAAKAASYKLALLSSREKNRVLEKIADELEAQTESILSANKQDVEQARENGLSE AMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRVPLGVIGVIYE ARPNVTVDVASLCLKTGNAVILRGGKETYRTNAATVAVIQKALEACGLPAAAVQSIDNPD RALVTEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDDSAEIAPALK IIVNAKTQRPSTCNTVETLLVHQDIAERFLPALSHKMAESGVTLHGDEIVMQVLNGPAKL VPLKPEELDNEFLSLDLNVVVVENMDGAIAHIREHGTQHSDAILTRTIGNANRFVNEVDS SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDDTIRA >gi|283548478|gb|GG730299.1| GENE 2405 2609273 - 2610376 1317 367 aa, chain - ## HITS:1 COG:STM0321 KEGG:ns NR:ns ## COG: STM0321 COG0263 # Protein_GI_number: 16763703 # Func_class: E Amino acid transport and metabolism # Function: Glutamate 5-kinase # Organism: Salmonella typhimurium LT2 # 1 367 1 367 367 677 96.0 0 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQMLLTRADMEDRERFLNARDT LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQQGLFTADPR TNPQAELIKDVHGIDDALRAIAGDSVSGLGTGGMGTKLQAADVACRAGIDTIIAAGSKPG VIGDVMDGVSVGTRFHAQASPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGI KSVTGNFSRGEVIRICNLEGRDIAHGVTRYNSDALRRIAGHHSQQIDTILGYEYGPVAVH RDDMITR >gi|283548478|gb|GG730299.1| GENE 2406 2610666 - 2611721 1287 351 aa, chain + ## HITS:1 COG:STM0320 KEGG:ns NR:ns ## COG: STM0320 COG3203 # Protein_GI_number: 16763702 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Salmonella typhimurium LT2 # 1 351 1 350 350 580 90.0 1e-165 MKKSTLALAVMGIVASASVQAAEIYNKNSNKLDLYGKVKAMHYMTDYDSKDGDQSYIRLG FKGETQINDELTGYGRWEAEFAGNKAESDSNQQKTRLAFAGLKLKNLGSFDYGRNLGALY DVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVVDGLDLTLQYQGKNQDRD VKKQNGDGFGTSVTYDFGGSDFAVSGAYTNSDRTNQQNLQTRGTGDKAEAWATGFKYDAN DIYIATFYSETRNMTPISGGFANKTQNFEAVVQYQFDFGLRPSLGYVLSKGKDIEGVGNE DLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLGINDDDIVAVGMVYQF >gi|283548478|gb|GG730299.1| GENE 2407 2611779 - 2612180 433 133 aa, chain - ## HITS:1 COG:no KEGG:SG0330 NR:ns ## KEGG: SG0330 # Name: crl # Def: DNA-binding transcriptional regulator Crl # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 133 1 133 133 252 91.0 3e-66 MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNVKPAPEKREFWGWWMEL EAQEKRFTYSYQFGLFDKDGNWTAVPVKESEVVERLEYTLREFHEKLRGLLTSLDLALEP ADDFNDEPVKLTA >gi|283548478|gb|GG730299.1| GENE 2408 2612238 - 2613482 1288 414 aa, chain - ## HITS:1 COG:yafA KEGG:ns NR:ns ## COG: yafA COG1073 # Protein_GI_number: 16128225 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Escherichia coli K12 # 1 414 1 414 414 797 90.0 0 MSQANLSEVLFKPRFKHPETSTLVRRFNHGAQPSVQSALDGKTVPHWYRMVNRLMWIWRG IDPREILEVQARIVMSEAERTDKELYDTVIGYRGGNWIYEWAKQAMDWQQKASMEEDPQV SGRHWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEAAQRLPGTLREMEFAVAGGAP ITGFLHMPKGDGPFPTVMMCGGLDSMQTDYYTLYERYFAPRGIAMLTLDMPSVGFSSKWK LTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESSRLKAVACLGPVV HALLSDPQRQASVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLS GFWKNDPFSPEEESRLITSSSSDGKLLEIPFNPVYRNFDKGLQEITKWINQRLC >gi|283548478|gb|GG730299.1| GENE 2409 2613583 - 2614041 606 152 aa, chain - ## HITS:1 COG:STM0317 KEGG:ns NR:ns ## COG: STM0317 COG0503 # Protein_GI_number: 16763699 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Salmonella typhimurium LT2 # 1 152 1 152 152 306 99.0 9e-84 MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCI SSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRP LVDDYVIDIPQDTWIEQPWDMGVVFVPPISGR >gi|283548478|gb|GG730299.1| GENE 2410 2614303 - 2615760 1825 485 aa, chain + ## HITS:1 COG:ECs0264 KEGG:ns NR:ns ## COG: ECs0264 COG2195 # Protein_GI_number: 15829518 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Escherichia coli O157:H7 # 1 485 1 485 485 945 94.0 0 MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHILSWAQEKGFHVERDQVGNILIRKP ATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGM ASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGC AGGIDFTSNLLLSREAIPAGFQSFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE ELDLRLVDFNGGTLRNAIPREAFATLAVAADKVDALKALVNTYQDILKNELEAKEKNLAL LLDAVANDKAALTTQSRDAFVRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQI HCLVRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFN KTPNIQIIHAGLECGLFKKPYPDMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLK SIPAK >gi|283548478|gb|GG730299.1| GENE 2411 2615895 - 2616950 896 351 aa, chain - ## HITS:1 COG:dinP KEGG:ns NR:ns ## COG: dinP COG0389 # Protein_GI_number: 16128217 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 1 351 1 351 351 663 91.0 0 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG MALKLCPHLTLLPGRYDAYKEASRQIQAIFSRYTSLIEPLSLDEAYLDVTDSAHCHGSAT LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPADVPEFLRTLPLGK IPGVGKVSAAKLESMGLRTCEDVQKYDLAMLLKRFGKFGRVLWERSQGIDERDVNNDRLR KSVGVERTLAEDIHEWSECEAIIERLYPELERRLTKVKPDLLIARQGIKLKFNDFQQTTQ EHVWPRLNKEDLIATARKTWDERRGGRGVRLVGLHVTLLDPQIERQLLLGL >gi|283548478|gb|GG730299.1| GENE 2412 2617017 - 2617658 461 213 aa, chain - ## HITS:1 COG:no KEGG:ROD_03301 NR:ns ## KEGG: ROD_03301 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 212 1 212 213 303 63.0 5e-81 MIDVTHIIPLDIHTDNVTDVVCQGAHFDKVSGIWYTEPHELNEALRDYVYNTGSFNIVAP YYLVITSKMHCWNCHQLTHIHGVMFTRFIRKEQDGKGWQSVRRNSFLFHINSLPEEIKKN IKASNYYLDKSKTTGLRYWMNHCEICGERLGDYELFCVENDAFRLMTIEKLLRAKIRKVN KLFVSTAGNPAEHTTSDIVRYLCDARFIMNGPA >gi|283548478|gb|GG730299.1| GENE 2413 2617713 - 2618711 986 332 aa, chain - ## HITS:1 COG:mbhA KEGG:ns NR:ns ## COG: mbhA COG1360 # Protein_GI_number: 16128216 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Escherichia coli K12 # 53 324 7 259 261 391 78.0 1e-108 MRKGPNRRDRGAKTTIIRRQIKKNHAGHHGGAWKVAFADFTLAMMALFMTLWIVNSVSKA DRENIVAALHGQSIFNGGGMAPLNKLGKQPIAPGAQKKNVTRNKLDKTVNPQETARITEE NAKKALDVNEKTALLKQKSAQELGELATDINVIARKAHMETNLEMEIVPQGLRVLIKDDQ NRNMFERGSAKIMPFFKSLLVELAPVFDSLDNKIIITGHTDAMSYKSNIYNNWNLSGDRA LSARRVLEDAGMPQDKVMQVSAMADQMLLDAKNPESAGNRRIEIMVLTQSASDTLYQYFG QHGEKVVQPLVDKLDKQKQVTSLRQHPVPAAH >gi|283548478|gb|GG730299.1| GENE 2414 2618714 - 2619577 1100 287 aa, chain - ## HITS:1 COG:YPO0746 KEGG:ns NR:ns ## COG: YPO0746 COG1291 # Protein_GI_number: 16121064 # Func_class: N Cell motility # Function: Flagellar motor component # Organism: Yersinia pestis # 1 284 1 284 288 339 67.0 4e-93 MQKIFGLLVVLGCVFGGYFEAGGQLIAIWQPAEIIIIVGAGLGAMIIGNPVHVLKEIAHQ IKGVISKKKMGPEFQRQLLMCLYELLEMVQNGGLRMLDQHIEQPEESTIFQKYPLVLTQK RLVTFIADNFRLMAMGKIDAHELEGILDQELDTAEESLLTPSRSLQRTAEAMPGFGICAA VLGIIITMQSIDGSIALIGLKVAAALVGTFLGVFICYCLMDPLANAMEQQARAEHSLLEC VRTVLVAQAGGKPTLLAVDAGRKLLHLASKPTFANLDAWVNAMLEQE >gi|283548478|gb|GG730299.1| GENE 2415 2619607 - 2620323 678 238 aa, chain - ## HITS:1 COG:YPO0745 KEGG:ns NR:ns ## COG: YPO0745 COG1191 # Protein_GI_number: 16121063 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Yersinia pestis # 7 232 2 228 231 220 52.0 2e-57 MIQDAYESEDFNATPVLTPKQESHYLQAYLPLVRKVVRQLAPQCTCVMDRQDMEQTALMG LLNAIRRYGQPDEGFAGYAVHRIRGAILDELRSLDWRPRQLRQKYHQIKDLIRDARTQLG HEPSWEELSRLGLSSEDYQEYQQLEGAETLASLDELLNGDMPIAPLEGRGLEEQFVTQEM LSYALSQLSEKEGLVLSMYYQHDMNLKEIALVLGLTEARICQMNKKITHKIRDCLYPD >gi|283548478|gb|GG730299.1| GENE 2416 2620344 - 2620814 461 156 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_0281 NR:ns ## KEGG: EcSMS35_0281 # Name: lafF # Def: lateral flagellar basal body-associated protein LafF # Organism: E.coli_SECEC # Pathway: not_defined # 1 156 1 155 155 160 59.0 2e-38 MKKIVIACLISSVVALGIAGGAGWGVYHYMKKGTTAAAEKPAHEAEDSQDESSSIFVSLP ETVVTLHDNEGGDRYMVAELVMVVDTEKDAEKIKKDEPLYQSITVDELSNMKYEDIRALK ISEIRKKIFENLKAELAKRKMATPYKDILVKKVVFQ >gi|283548478|gb|GG730299.1| GENE 2417 2620822 - 2621994 618 390 aa, chain - ## HITS:1 COG:YPO0743 KEGG:ns NR:ns ## COG: YPO0743 COG3144 # Protein_GI_number: 16121061 # Func_class: N Cell motility # Function: Flagellar hook-length control protein # Organism: Yersinia pestis # 63 363 56 361 393 79 30.0 1e-14 MNPVLLAPASASAKAAPETATISASASPASSDTFSLPQSGLNAAVERLIGAKLSHQQTSA AEHKQDDANPAAMQALLAMLLAQPTQAAPADVQKQPDGEMLKMLAQAQTTRPGSSLLRQL ASAMAQPEKTSAPSAGQHATDLSSLPPKLQTLLASLSEDLPSATPDQQAKLATFSAQDLR AIAPEPASLSTSQQISARVKSTQSPSPRPVVERKTAGVTVSPALSTQSLLNTAAQGNQPV NPLTGHNIVSTPVSAPVTMSTEELGEKLTALLKDRIQFQIGQQQQVSTIRLDPPSLGKLE IAVQLDAGKLMVHIGANQSDVCRSLQQFSENLRQHLTAQNFMEVNVQVSSEGQSQQQQQQ SGHQQDEVTSALTLNDEPQFQQNESVLIKV >gi|283548478|gb|GG730299.1| GENE 2418 2621991 - 2622308 205 105 aa, chain - ## HITS:1 COG:no KEGG:EcolC_3355 NR:ns ## KEGG: EcolC_3355 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 4 105 2 103 103 100 65.0 3e-20 MERERQQQQLYALVAAMNDALDQKRWRRLPGLHQQVMRDFHAYAAWETDAEALREVKSRM LIAFEALIARRTQRAEELKARMDKHQQNQEGMLAYSMVNLISEKA >gi|283548478|gb|GG730299.1| GENE 2419 2622313 - 2622705 494 130 aa, chain - ## HITS:1 COG:YPO0741 KEGG:ns NR:ns ## COG: YPO0741 COG1516 # Protein_GI_number: 16121059 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport; O Posttranslational modification, protein turnover, chaperones # Function: Flagellin-specific chaperone FliS # Organism: Yersinia pestis # 11 125 11 124 126 128 60.0 3e-30 MYDTQDGYSQYKEMDLAARTAAASPLELVLVLFSGLMDELERAKSHIENKRYERKAQSIN KCIDILNALTSSLEFETGGELVVNLSRLYDHCVYRLYEASGELSLEKIDEVILILTNLRT GWEGLSAKLG >gi|283548478|gb|GG730299.1| GENE 2420 2622739 - 2624064 1464 441 aa, chain - ## HITS:1 COG:YPO0740 KEGG:ns NR:ns ## COG: YPO0740 COG1345 # Protein_GI_number: 16121058 # Func_class: N Cell motility # Function: Flagellar capping protein # Organism: Yersinia pestis # 26 440 25 418 425 123 26.0 8e-28 MSFTSPIQKLAQEFAYADIATQAANLQNQQNELDAESNGLDSLSSALTDFQSAIDALNSD TDGPLTFSATSSNDSNTISANSEAQAGTYSFYVSALAQAQQTTFSMSDDQYSASGTFTLS MDDGTTMDIDLAAADEDGDSFIDANELVDAINNSDDNPGVSAALVKTDGTTTIMLTSDTT GAQSGFSVSVTGNTDLAAAESSSEQLITNPQDAEIHLGSQTGPAITSSTNTFDDVIPGVT MTFSEVSDPDDPNDVTTFTVAEDSSGSQAKVQTFVDAYNTLIDTIDSLTSYGDDGTAAGV FAGDAGMNSLANQMDDIAHASYGGVSIVDYGITLDSDGHLQIDSTQFSEEMEENPDGLTS IFVGDDSMVAQMDDLMESYLDSSNGIIAMRQENIDNQQSKIQDESDQLTETYNTNYDRYV EEYTNTLVEVYTMKVSMAAFM >gi|283548478|gb|GG730299.1| GENE 2421 2624261 - 2625175 1048 304 aa, chain - ## HITS:1 COG:TP0792 KEGG:ns NR:ns ## COG: TP0792 COG1344 # Protein_GI_number: 15639779 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Treponema pallidum # 4 304 3 286 286 113 28.0 5e-25 MLSINTNTASMSAVNAINKSSASLSTSMERLATGNRINSSADDAAGKQIASRLTAQSSGM GVALSNINDATAMLQTADSMFDEMTDVLGRMKDLSTQAANGTYSDEDLQAMQDEYDELGQ QMSDMLQNTTYGGTNLFGVSGTSNTGKDGLFQSGVTFQVGAESSDTMTVDISSQLDDLVG ALGDVSASFRGDQADATGNAGVSGGSELTTSGSANAMIGTIQTAMDDVSKIQSKLGASIN RLNDTAANLTSMQDNTEVAIGNIMDTDYATEASNMTQQQVLMQTGITMLKQSNSMSSMVS SLLQ >gi|283548478|gb|GG730299.1| GENE 2422 2625731 - 2626681 604 316 aa, chain + ## HITS:1 COG:YPO0736_1 KEGG:ns NR:ns ## COG: YPO0736_1 COG3710 # Protein_GI_number: 16121054 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Yersinia pestis # 2 134 13 142 181 103 44.0 4e-22 MSIVVNNWRMDSSLNALIHCETGEIRRLGEYHFILLETLAKNADVVLSRSYLMTAVWKNR IVGGNSLPTAVHALRVAIDDDGKQQEIIKTIPKKGYLFNKKYLIEIIDHNETEVDDSIVD EAEKSTEAAEALAPEGMSSPTEKEKITIFNNQLPSRQQRKPVARRHPYRAVLITLPVIVI ALLLFGLISYFKAPSVAKMEEAPQLVKETLENTDRIAVYQLYDPGENKKSSSFVSQHILP GVEQINPLLVAHNASMTLYYRVSMNKLALDIVLNNQCNDKWQLALSFDNWLNKDNEMNGI LIKEVEKMLNEMPKCK >gi|283548478|gb|GG730299.1| GENE 2423 2626659 - 2627138 264 159 aa, chain + ## HITS:1 COG:no KEGG:ROD_03181 NR:ns ## KEGG: ROD_03181 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 150 1 150 157 152 48.0 5e-36 MKCQNANNFFFPGLSAFTLFCTFMAYAHIENTVIANYDLTTGKNVHYELIANPLDKSTTI TLVPLEQNNKMSSTFKVASCINHYTGSYKQGEFHFSTTKTDQNDSRMANLGAFVTEHNLH TWWLHINPQQNLIFTRDVGSLLITDSSVFNFSTKACHQD >gi|283548478|gb|GG730299.1| GENE 2424 2627135 - 2628136 803 333 aa, chain - ## HITS:1 COG:no KEGG:ROD_03171 NR:ns ## KEGG: ROD_03171 # Name: lafW # Def: lateral flagellar putative hook associated protein # Organism: C.rodentium # Pathway: not_defined # 1 332 1 332 333 395 70.0 1e-108 MQVGLNTTSLSGSGALHSSVQQHTVVQNAPVRQKLPATASDYPASPLITTRPQRYSVQLN DQLTTLQQADHYLGQLEQHLLDYRHASRRGGQAQQQKGAELSQWLDKRTALSGGAVDRQL RPVLQGEARVTFHAPELAQMLQKEAISSRMFSVSDGRQTQHSAVVVGEDLDPGQYKMMMS NALRRVGVQVHDRQGALTFSTTEKQWPQIQQTLSVRDVDAKTSAFTPLKTFADPSRSEEL QQHISQGGARTQDGLQQALDSIGDQRAQMAAQQEKARQLIDGMARFPQAESAVKASESLG GVLDHANHNYQVLAQAVNGQARLSSQTVRSLLS >gi|283548478|gb|GG730299.1| GENE 2425 2628162 - 2629091 1164 309 aa, chain - ## HITS:1 COG:YPO0733 KEGG:ns NR:ns ## COG: YPO0733 COG1344 # Protein_GI_number: 16121051 # Func_class: N Cell motility # Function: Flagellin and related hook-associated proteins # Organism: Yersinia pestis # 1 309 1 307 307 133 27.0 4e-31 MRVTAQQSYVSMTQSFNDLSSDLSHVVTQMATGKSILLPSDDPIAATRITELNRQQSALD QYQTNIDSATAGMSQQESILDGVNNDLLAIRDDLLEAANGTNTAESLSSLGQDIQSMTEA MVAALNYQDEDGHYVFGGTVNDRPPIVAVDDDGDGVTDSYSYQGNSEHRQTTVSNGVEVD TNVAVSDFFGDSLDVLNTLTSLSKELQDPSVDPADPQVQSDIQNAIDTVDVASDELNASI ATIGETQNTMTMLSGAQTDISTSNDQLISQLSDLDYGPASITFTGLEMAMQATLKTYSKV SELNLFSVI >gi|283548478|gb|GG730299.1| GENE 2426 2629110 - 2630486 1568 458 aa, chain - ## HITS:1 COG:YPO0732 KEGG:ns NR:ns ## COG: YPO0732 COG1256 # Protein_GI_number: 16121050 # Func_class: N Cell motility # Function: Flagellar hook-associated protein # Organism: Yersinia pestis # 1 456 1 452 453 289 38.0 8e-78 MDMINIGYSGASTAQVELNVTAQNTANAMTDGYTRQVAITSTIGASSGSANSAGNGVQVD SIRRVSNQYQVNQVWYAASDYGYYNTQQEYLTQLETVLSDDNSSLSGGFDNFFAALNEAT TSPDDSALREQVISESGALALRVDNTLDYIDSQSSEIVSQEKAMVAQVNTLTSGIASYNQ QIAEAEANGDNASALYDARDQMVEQLSGIMDVQVNIDDEGNYNVTLQNGQPLVSGQESST IELDTNADGTQSMSLTFAGTTSSMNTDTGGSLGALFDYQNEVLTPLTGTINSMAEQFADA VNTQLAQGYDLNGNPGEPLFIYDENSSDGPLEVNPDITADELAFSSSPDESGNSDNLQAL INISTEPLDIEGLGSVTVGEACSSIISNIGIYSQQNQTEAEAAANVYSEAQNQQSSVSGV SMDEEAVNLITYQQIYEANLKVISTGADIFDSVLEMCS >gi|283548478|gb|GG730299.1| GENE 2427 2630585 - 2630896 429 103 aa, chain - ## HITS:1 COG:YPO0731 KEGG:ns NR:ns ## COG: YPO0731 COG3951 # Protein_GI_number: 16121049 # Func_class: M Cell wall/membrane/envelope biogenesis; N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Rod binding protein # Organism: Yersinia pestis # 23 97 20 94 97 79 49.0 1e-15 MADIKVNHSGGIDGSDALMGPKIKDNDLQKAAQQFEAIFLRNMLKEMRKTNEIFDSKDNP FNSDSVRMMQGFYDDQLCNTLAQQHGIGIAEMIVKQLSPHHKG >gi|283548478|gb|GG730299.1| GENE 2428 2630896 - 2632017 1260 373 aa, chain - ## HITS:1 COG:YPO0730 KEGG:ns NR:ns ## COG: YPO0730 COG1706 # Protein_GI_number: 16121048 # Func_class: N Cell motility # Function: Flagellar basal-body P-ring protein # Organism: Yersinia pestis # 15 373 12 370 370 436 69.0 1e-122 MQHLSGRWINALNGIVISLSLALPGTTQAQSLESLVNVQGVRENQLVGYSLVVGLDGTGD KNQVKFTNQTITNMLRQFGVQLPSKIDPKVKNVAAVAVSATLPPMYSRGQTIDVTVSSIG DAKSLRGGTLLLTQLHGADGEVYALAQGSVVVGGMNATGASGSSVTVNTPTAGLIPNGAS VEREIPSDFQMGDTITLNLKRPSFKDANNIAAAINASFGGIATAESSTNVSVRAPTSPGA RVAFMSQLDDVQVQAEKVRARVVFNSRTGTVVMGDGIALHAAAVSHGSLTVSINESSNVS QPNAFAGGRTAVTPQSNISVNHARPGMISLPESSSLKTLVNALNSLGATPDDIMSILQAL HEAGALDADLEVI >gi|283548478|gb|GG730299.1| GENE 2429 2632032 - 2632778 692 248 aa, chain - ## HITS:1 COG:YPO0729 KEGG:ns NR:ns ## COG: YPO0729 COG2063 # Protein_GI_number: 16121047 # Func_class: N Cell motility # Function: Flagellar basal body L-ring protein # Organism: Yersinia pestis # 28 248 1 221 221 288 63.0 5e-78 MQVYPAYELLSFVGRISVALSGRNRQNVKNYLWLVVLLPLLSGCESQAILVKKNDEFFAP PKTEAPPTADGRAGGVFETGYNWSLTADRRAYRVGDILTVMLEESTQSSKQAKTNFGKNN TVDIGAPTLFGHTKDNLSASVDANRDFNGTATSQQQNSLRGEITVSVHSVQSNGILEIRG EKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRL FNHPLFPI >gi|283548478|gb|GG730299.1| GENE 2430 2632800 - 2633585 961 261 aa, chain - ## HITS:1 COG:YPO0728 KEGG:ns NR:ns ## COG: YPO0728 COG4786 # Protein_GI_number: 16121046 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Yersinia pestis # 1 261 1 261 261 330 68.0 2e-90 MNAALWISKTGLSAQDAEMSAIANNIANVNTTGFKRDRVMFQDLFYQTQEAPGAMLDQNN IMPTGMQFGSGVRIVGTQKTFTEGNVETTDNTMNVAIMGQGFWQVQKANGDIAYTRDGNL QVNADGVLTNAQGLPLQPEIDVPAGSTQVAFAPDGTVSAILPGDSDPTELGQLTLVNFAN PAGLSAEGDNLYLETAASGQPTEGIPGEDGLGTLQDGALEGSNVDIVNEMVAMITVQRAY EMNAKMVSAADDMLQFISQTL >gi|283548478|gb|GG730299.1| GENE 2431 2633616 - 2634353 858 245 aa, chain - ## HITS:1 COG:VC2196 KEGG:ns NR:ns ## COG: VC2196 COG4787 # Protein_GI_number: 15642195 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Vibrio cholerae # 1 245 1 249 249 163 43.0 3e-40 MDRLIYTALSGATQTLLEQQISANNLANVNTNGFRADMAMASNDKVKGGGFDTRFMAKES PSGVNDSTGVAEKTERPLDVAIQGSGYIAVQDKAGNEVYTRNGNIQQDDQGQLTIDGNVV LGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDIDRLKLVDIPVANLAKNSEGMLV TADGIPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDLSDSGNR LLRGS >gi|283548478|gb|GG730299.1| GENE 2432 2634363 - 2635565 1424 400 aa, chain - ## HITS:1 COG:YPO0725 KEGG:ns NR:ns ## COG: YPO0725 COG1749 # Protein_GI_number: 16121044 # Func_class: N Cell motility # Function: Flagellar hook protein FlgE # Organism: Yersinia pestis # 1 400 1 413 413 291 46.0 2e-78 MSYEIAATGLNAVNEQLDGISNNIANSGTVGYKSMTTQFSAMYAGTQAMGVSVAGSAQSI STGGSMVSTGNALDLAINDDGFFVMCDSAGNISYTRAGSFVTDKNGYIVNASGDYLQGYP VDDSGTLQTGTVTDIQIKTGNIPAQATDSMTFTANFDASDETIDRTSVPFDANNSDTYTD SYTTTVYDSLGNEHSVSQYFTKTGDNTWEVQYTFDGEAQSGVPATTLTFDPNTGKLTDPT TPQTITFTTDEAAPISMTVDYSDCTQYGSDFSVTTNSATGYASATQNGVQVDDDGKVYAT YSNGERMLQGQVVLATFPDENGLQAVSGTAWVQTGESGTPLIGTPGSGSCGTLSSGMLES SNVDITNELVNLMTAQRNYQANTKVISTSTQLDQALFQAM >gi|283548478|gb|GG730299.1| GENE 2433 2635592 - 2636479 1113 295 aa, chain - ## HITS:1 COG:YPO0724 KEGG:ns NR:ns ## COG: YPO0724 COG1843 # Protein_GI_number: 16121043 # Func_class: N Cell motility # Function: Flagellar hook capping protein # Organism: Yersinia pestis # 70 263 31 217 218 130 38.0 4e-30 MNTLALYAQSQALASSQEKTTAVAENNVGATAQSTNVGDSSSSTTSSTTDTSDTSSTTTT TTSTETSAVDTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANTNAVL MSNIQVMALGNMVGDDIMVQTTTLDIEDNSKAIQGRVTLDDSCTDVDLHFTDEAGDDYTV SLISEGETSVGPGQVDFDINPADYGIPPGDYNVSVVTNTGEEEVPIEVTGQVEDVRIPLD GSTPVLNVDGVGEVPFTMITQFGVPDSTDGTSGSDDTTPPDTDDGSNNANSNMVL >gi|283548478|gb|GG730299.1| GENE 2434 2636479 - 2636910 512 143 aa, chain - ## HITS:1 COG:YPO0723 KEGG:ns NR:ns ## COG: YPO0723 COG1558 # Protein_GI_number: 16121042 # Func_class: N Cell motility # Function: Flagellar basal body rod protein # Organism: Yersinia pestis # 1 142 1 140 141 164 66.0 6e-41 MSFTDIYQISGSAMTAQTIRLNTVASNMANAESPASSEAQAYKARSPVFAAVYNNSLIGG HNRHAIDGASVQVQDVMQSGGAVKRYEPHHPMADQNGFVWYPDVNVVEQMADMMSASRDF ETDVDVLNNVKSMQQSLLKLGEV >gi|283548478|gb|GG730299.1| GENE 2435 2636913 - 2637260 341 115 aa, chain - ## HITS:1 COG:YPO0722 KEGG:ns NR:ns ## COG: YPO0722 COG1815 # Protein_GI_number: 16121041 # Func_class: N Cell motility # Function: Flagellar basal body protein # Organism: Yersinia pestis # 1 115 1 148 148 139 53.0 1e-33 MGISFQQALGVHPLAVKLRLERTELLTANLANVDTPNFKAKDIDFATEMQRASRTNVLPE VDVKYRVPMQPSEDGNTVELNTEQARFSQNSMDYQSSLTFLNLQLSGIKEAIEGK >gi|283548478|gb|GG730299.1| GENE 2436 2637343 - 2638110 439 255 aa, chain + ## HITS:1 COG:YPO0721 KEGG:ns NR:ns ## COG: YPO0721 COG1261 # Protein_GI_number: 16121040 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones # Function: Flagellar basal body P-ring biosynthesis protein # Organism: Yersinia pestis # 22 253 2 233 237 166 36.0 6e-41 MRLPSYVRKLSFPFAAEIWLALCCVIPAHAAVHPIQHSARDQINAQVLSAASHEIDALAR KQQWQDYRYTFNIYIPSAVSTSARCASTPQVTSSTSPEMALSRMNFVVSCPGSNGWQFNV AVRPDVSIPVVMPKSLIARDTVITADDLQLKKFNISNQREGLMTNMDEAIGLTSKRALQP GKPITRSELVLPVLVKRDQPVMIVSHMAGITASMPGVALKNGRKGEVIKIRNSSSQRIIS GVVDDTGVVTTLAAQ >gi|283548478|gb|GG730299.1| GENE 2437 2638210 - 2638497 234 95 aa, chain + ## HITS:1 COG:no KEGG:ROD_03031 NR:ns ## KEGG: ROD_03031 # Name: lfgM # Def: lateral flagellar anti-sigma factor 28 protein # Organism: C.rodentium # Pathway: Flagellar assembly [PATH:cro02040] # 1 94 1 95 95 82 65.0 4e-15 MKITPTLPGNRPASTTEQACADKSSVQTSASSSATLSADDITQAGLQTAQQTLNSDTQSD IDYDKVAQMQAMLASGNMQVDTDRLAGDMLSFFQK >gi|283548478|gb|GG730299.1| GENE 2438 2638510 - 2638938 389 142 aa, chain + ## HITS:1 COG:no KEGG:ROD_03021 NR:ns ## KEGG: ROD_03021 # Name: lfgN # Def: lateral flagellar chaperone protein # Organism: C.rodentium # Pathway: Flagellar assembly [PATH:cro02040] # 1 141 1 141 142 193 78.0 2e-48 MSTRLQQVKTLLQGIREDGTRYDALRHQLEQQRLCMIRRDSDELLAVNELIQQHYEQLQN SSHQRRSLLQLLGVSADRAGMEQVFSWLPGVQKSAAEGWWQSLEQKAKRCKMYNEKNGDL LIRQYEFIQAFLGTEPDFIYQR >gi|283548478|gb|GG730299.1| GENE 2439 2639073 - 2640017 750 314 aa, chain + ## HITS:1 COG:no KEGG:ROD_03011 NR:ns ## KEGG: ROD_03011 # Name: lafV # Def: lateral flagellar associated protein # Organism: C.rodentium # Pathway: not_defined # 1 312 1 312 314 359 63.0 7e-98 MSMIDCYEPDFVRLFLSHHPDSALLVNMRWKTEVRQSLLLTDPDSCQAALGDPDAFVLHT SKCAADPASPALSPRDRVLNQSALNTITLAGLSPELRLYALGIMLSFGEKCPGDSDPTLE KLASLPQVLAGHAQSGKLQEQFAQLPSLPQLQREMITQMGNCDFNWELLPESARKLTLPL QVSLLMLQDANSEALLQQQLQDQWLPTWERYFEQETWIFSNYLIYRLYHDTFPQHDDESA LQRFFWLVADVFMIRTLFCLWTMDDSVLSHDEIYALFALFEAWRNSENASSLRQHILNIL PGDPLLSAFSLITR >gi|283548478|gb|GG730299.1| GENE 2440 2640074 - 2642635 2067 853 aa, chain + ## HITS:1 COG:YPO1382 KEGG:ns NR:ns ## COG: YPO1382 COG3306 # Protein_GI_number: 16121662 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase involved in LPS biosynthesis # Organism: Yersinia pestis # 267 469 7 217 224 109 33.0 3e-23 MPETSKARSALTGIVKTLDTGREKPFVSVVTPTWNRGAFLPYLLYMYRYQDYPADRRELV ILDDSPQSHQSIINRLTQNHPEKFNIRYIYHPEKLTLGKKRNMLNELALGEYILCMDDDD YYPADKISYTIDMMQRHRALISGSDQIPIWYSHINRLFKSRSFGPQNILNGTFCYHRNYL KKHRYDDECNLGEEEGFTNQFTVNPLQLPGERTIICISHSQNTFDKDFVLGSSEPQGTSL AQAVTDPMLKNWYQSLHNATHHQPIRWDYIDQVVIVNLDSRPDRLAHIQQELTFLNFPAE KVTRLAASVATNGQIGRSQSHMRALQLAQLKGWKNYLLLEDDSVILKQEKHIRVLNSLLS ALPSFPWEVVILGGEIKQGSELKSLQGMIHARDCNKVCAYLVNGSYYPTLAQQMEHDLSD TLEGQWQPLLREGKWLSCYPSICYQRAGYSDIEKKDTDNIGYYFNKINKKPETVNALVSN SLPAASPHINAIGLYMETSLHYAVYRPIITALQAMGHTCSLLVSDKIHKSFLDEMTATIK TINNPALGGMRLSTAVEQRQRFKCLVSPYYTPLLNGLADTHVRAMYGLAKEEWNHAWWNA FYHRILCYSHYSQQALDIGGSAKVVGNPRFDEWHNHTFDNTLPKSLKLNAKKQTILYAPT YGALSSLPHWAEQLGRLSHEYNIVTKLHHGTLHRPEEAASLALAQRYLKNRLDDPQHLLA LITQADYVLTDSSGFIFDAIHMNKRVILLSWPDMPSLLDGQQSFSTPDSADQRIRDILPV AQDIQGLRNALSDAFDWAALETPLAEIRHHYCDAFMDGQAGKRAAQEIAALLTETENAHS NTLLHSLQRKFFS >gi|283548478|gb|GG730299.1| GENE 2441 2642688 - 2643944 215 418 aa, chain - ## HITS:1 COG:no KEGG:CKO_02888 NR:ns ## KEGG: CKO_02888 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 415 1 412 415 469 53.0 1e-130 MGFLGRFPLRKIVEKYQVTHLVETGYGIGNSCRMALSAGFHHALSCEIYQPLYEKALQEK NENITVCPDDSLSFLNSEAVNDILRSRRSLIFLDAHYPGSDYCNEHYRSDEWDKDIRLPL INELRILEGKIDNAIVIIDDCRIYLKDFAVTSGTLPEYADHGFDRANEFIGLLESFADTH SLHWHPEDTGYAVLWPHSLAGEVIKPLILPGDVTSKFLINRGVVGTTSMSVNRRLMDARF TSRWFVGAGLDIGGGPDSIGIYRSLFPLMRTVTVYDLPQGDAQYLDNVSDDSFDFVYSAH CLEHVVDPFIAINNWMRVLKPNGHLIITVPDEDMYEQKVWPSTFNTDHKHTFSIFKKSSW SPVSINVLELIQTITANHDVQKIELLNHSYLSGLPRFDQTRTPFAESGIEIVIKKRPQ >gi|283548478|gb|GG730299.1| GENE 2442 2643981 - 2646077 351 698 aa, chain - ## HITS:1 COG:no KEGG:CKO_02890 NR:ns ## KEGG: CKO_02890 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 375 691 10 326 329 223 33.0 3e-56 MKIKLFIETKEVTLPLQMANFIHGVDEGGVVNVFLICSNTLNEKWLAKSSNIVIRYNEFT LLSALDKISHVLINQRPTAIDIHAALAESYDLLLPLLMRLNLLRSIIHLHVYEGNTGELV AAAALEKLPLHLFNKLAVGYANKINMAMDNNKIIPKEEWNIAAGYAWHKVLTTTYYLQEN SALKNSKKLPCENTPLVDEHKITHFLALFKIPYGIYAQLQKIGTSSLLLLSTSPRFPSLK KQHQEALVDVIQHAIKEFAISEEKILLFREKKEGEVDGEILRQLGCRAIKLPELITLNFL KVLQILPLAIAGYFSDELYQAPEKSILFFLTTELPEDTDKYAGHINFSNKKIYHVNELVG VKPGSFKKRIFYCPGSMGDAIYALGCLTAFRECHDEDFIFIAHKLYHDLIASSPVVAQYW DINALTEDAFIDIAIARQENKFHFLGHWEDIVASEHMTDAFIGDSIHNHSLCNKQPIISL ASLDKKNVNDFIHNHHLQKEKTVLLHPNIGSPNRTWTEKGWNQLAKYFIAAGWKVVIIGS DNNKYQEKKMMDIDIPEAINCINQFSMLEMIYLMERCQLLVACDSGPVALAGLTSIAICA LYSIIPASYRLPYRNGRYGWNAMGIDTECQFGQCGHLIMSPQFFKNKLGKEFTRPRGDEF SVWCPNDKKYRCMKKVTAEYFWHQIQLFLSSDDYVKNS >gi|283548478|gb|GG730299.1| GENE 2443 2646085 - 2646522 268 145 aa, chain - ## HITS:1 COG:aq_1368 KEGG:ns NR:ns ## COG: aq_1368 COG0615 # Protein_GI_number: 15606564 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Aquifex aeolicus # 13 138 6 130 168 130 51.0 7e-31 MLVKTEDAGAGMKTIITFGTFDVFHIGHLRILERAGQLGERLIVGVSSDALNMQKKGRMP VYNQNDRMGIVAGLKCVDSVFLEESLEKKADYIRQFNADTLVMGDDWAGRFDSLSYLCEV IYFPRTPSISTTSIIEVITYQYQNL >gi|283548478|gb|GG730299.1| GENE 2444 2646486 - 2646929 518 147 aa, chain - ## HITS:1 COG:no KEGG:ROD_02961 NR:ns ## KEGG: ROD_02961 # Name: lfiJ # Def: lateral flagellar export/assembly protein # Organism: C.rodentium # Pathway: not_defined # 1 145 1 145 147 192 82.0 4e-48 MRQIIDTLAQLQRLRDKSVKDMTVQLAKQQQVCAGFDSNIKALGYLIQKTGPGVDAPSVE SLKNVTGYKGTLRTVIAWQEQEKTLAKIKEQRIQKNLVAAACEEKIVAMTLEDKRDELSN EAQVKEQKAVDEIAAQCWLRQKTLGLV >gi|283548478|gb|GG730299.1| GENE 2445 2646932 - 2648272 1271 446 aa, chain - ## HITS:1 COG:YPO0717 KEGG:ns NR:ns ## COG: YPO0717 COG1157 # Protein_GI_number: 16121036 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Yersinia pestis # 1 444 1 444 446 643 73.0 0 MSDLSSFDNALRSIESIPLARVAGRLVRVNGILLESVGCPLVTGQLCRVESANHTLIDAQ AVGFNRDITYLMPFKHPVGLMAGARVFPEEKAQEILISESWLGRVVNGLGESLDAKGRLT GNDVLPPQAPSINPLTRRSVNQPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMI TRQTKADIVVVGLIGERGREVKEFIDHSLGAEGLAKSIIVAAPADESPLMRLKATELCHS IAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNS ESEGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCM TQVTPYEHQQSARLLKQNYAAYMEIKPLIPLGGYVAGADPSVDKAVKVFPAIERFLRQEV SEPASLELVQSRLQALFPQPKKTEGK >gi|283548478|gb|GG730299.1| GENE 2446 2648265 - 2648975 911 236 aa, chain - ## HITS:1 COG:YPO0716 KEGG:ns NR:ns ## COG: YPO0716 COG1317 # Protein_GI_number: 16121035 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway protein # Organism: Yersinia pestis # 9 236 14 239 239 219 49.0 3e-57 MAIETIRGRYRLHRFPPRQRHLQAEQLTPGITPADYQRQLMDGFQEGLQKGFEQGMTEGQ EQGFQEGHQKGHDEGRRQGYTEGSLAGQQEGRKQFERAALPLEAIAGKVNDYLTHIQRKQ REDLLQLVEKVTRQVIRCELALQPTQLLSLVEEAISAFPAMPASLQVLLSNEEFNRIKDV APEKVAEWGLTPSPDLQAGECRVITDKSELDIGCEHRLDQCMSALKESLLPEPTGE >gi|283548478|gb|GG730299.1| GENE 2447 2648979 - 2649995 1381 338 aa, chain - ## HITS:1 COG:YPO0715 KEGG:ns NR:ns ## COG: YPO0715 COG1536 # Protein_GI_number: 16121034 # Func_class: N Cell motility # Function: Flagellar motor switch protein # Organism: Yersinia pestis # 15 338 1 324 324 400 68.0 1e-111 MSELTINNGSNNSYLEQAAILLLCLGEEAAATVMQKLSREEVVRLSENMARLSGVKTSMA KKVINNFFDEFREQSGINGASRSMLQGILNKALGTEIASSVINGIYGDEIRSRMARLQWV EPRQLAILISEEHLQLQAVFLAFLTPEISATVLSYMNESVQNEILYRVAKLNDVNRDVVD ELDRLIERGLSVLSEHGSKVKGIKQAADIVNRFQGNQQVILDQLRERDEDVLEQLQDEMY DFFILSRQTDEVRRRLLDEVPMEDWAVALKGTEALLRRSIYAVMPKRQVQQLEAITSRLG PVPVSRIEQIRREIMGIARELEEAGEIQLQLFAEQTAE >gi|283548478|gb|GG730299.1| GENE 2448 2649973 - 2651655 1735 560 aa, chain - ## HITS:1 COG:YPO0714 KEGG:ns NR:ns ## COG: YPO0714 COG1766 # Protein_GI_number: 16121033 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway lipoprotein # Organism: Yersinia pestis # 18 560 13 544 546 442 46.0 1e-123 MNELIKKVTQFLPSFSFRLDGNKRLALLAAAAVAATAIIVSVLWNGNHGYVSLYGSQENL PVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGVQAMLPSGYELMDKDEV LGASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDEPQNSASVVVR LHYGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGAGEAVSAATRKRDQ ILKDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHYGDTPKVNREETVLD SDTNQIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPAALSKHSENKRDYSWDRSV EHIQHPGFDIKRLNVAVVLNQSAPALKNWKPEQTTQLTALLNNAAGIDAKRGDNLSLSLL NFVPQSVPVEPVVPLWKDDSILAWVRLIGCGLLALLLLLFVVRPLMKRLTAERRRTPTPE LALDAAPIAIPADKTHFAAAEDERKNIELPSFPGDDSLPSQSSGLEVKLEFLQKLAMSDT DRVAEVLRQWITSNERIDNK >gi|283548478|gb|GG730299.1| GENE 2449 2651660 - 2652013 300 117 aa, chain - ## HITS:1 COG:YPO0713 KEGG:ns NR:ns ## COG: YPO0713 COG1677 # Protein_GI_number: 16121032 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar hook-basal body protein # Organism: Yersinia pestis # 13 117 13 126 126 66 41.0 1e-11 MSINTIAPASTMQTQMMQDMQQMKAVAQAPVLSPMQVNGQLASSSVSFDRVMQGALNHVD RFQQVAEQQQTAIEMGKSDDLAGAMIASQQASLSFSALVQVRNKVASGFNDLMSMSV >gi|283548478|gb|GG730299.1| GENE 2450 2652061 - 2653047 729 328 aa, chain - ## HITS:1 COG:YPO0712 KEGG:ns NR:ns ## COG: YPO0712 COG2204 # Protein_GI_number: 16121031 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Yersinia pestis # 4 326 16 338 342 385 59.0 1e-107 MFELIAEAASSINVFSMARRIAAFNVPVLIHGETGTGKECIAKFIHSIAFAQQPSAPYIG VNCAAIPENMLEATLFGYDKGAFTGAVATVPGKMELANNGTLLLDEIGDMPLALQAKILR VLQEQQVERLGSNRLIKLNFRLIACTNKNLEEEVAAGRFREDLYYRMSVIPLTMPPLRER MEDIIPLAESFIKKYSTVLVKNIKLSESSRRALLSYAWPGNVRQLENAIQRGMILNRDGV IYPDTLGLPSIESDSWSEPQWQPKPSAQITTSDNLGQHGRSAQYQYIADLMRKYQGNKTK IADLLGITPRALRYRLASMRKQGIEIFS >gi|283548478|gb|GG730299.1| GENE 2451 2653642 - 2654505 535 287 aa, chain + ## HITS:1 COG:no KEGG:ROD_02331 NR:ns ## KEGG: ROD_02331 # Name: lfiM # Def: lateral flagellar C-ring switch protein # Organism: C.rodentium # Pathway: Bacterial chemotaxis [PATH:cro02030]; Flagellar assembly [PATH:cro02040] # 1 287 1 288 288 455 80.0 1e-126 MLKYSQTPGIFKLEGNRLGRPYHRLPTMFTGSFDTIESHLGNYFLKKHRTNITLKKIHCE MDVINKSAELLVSQVGHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRS RLALDISNIIFNKNISGIPLTLKPDSSTVQTHWAYQLTFVLGDEENCSFRILLDDSHTDY ILNLIRRSEHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLTTIKP GDILPIAMPDTFPVYIGKSELFNALIVEDKDKLFLSELTSKTEKSYE >gi|283548478|gb|GG730299.1| GENE 2452 2654498 - 2654869 565 123 aa, chain + ## HITS:1 COG:YPO0710 KEGG:ns NR:ns ## COG: YPO0710 COG1886 # Protein_GI_number: 16121029 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar motor switch/type III secretory pathway protein # Organism: Yersinia pestis # 15 122 35 136 137 101 53.0 3e-22 MSKPEDILEQGFELAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVE VMLADLLNIDDDTVIEMDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTHEIND LAP >gi|283548478|gb|GG730299.1| GENE 2453 2654866 - 2655624 806 252 aa, chain + ## HITS:1 COG:YPO0709 KEGG:ns NR:ns ## COG: YPO0709 COG1338 # Protein_GI_number: 16121028 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliP # Organism: Yersinia pestis # 16 249 23 256 256 257 67.0 1e-68 MKRALTLTLLLGISLLILSPFACAQGGDIPLLNVISHGNSQEYSVKIQVLILMTLVGILP TLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWINIYDHAVVP FENDQITLPDALSTAASPLKRFMLAQTNKKAIAQIMTIANAKGNAADQDLSIVVPAYVLS ELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWALTVG TLTSSIRGLGLG >gi|283548478|gb|GG730299.1| GENE 2454 2655637 - 2655909 298 90 aa, chain + ## HITS:1 COG:YPO0708 KEGG:ns NR:ns ## COG: YPO0708 COG1987 # Protein_GI_number: 16121027 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliQ # Organism: Yersinia pestis # 2 89 1 88 89 74 60.0 5e-14 MLTIDVAADIVASGIKVVIILVCVLVVPSLLVGMLVSIFQAVTQINEQTLSFLPRLIVTL AVLGICGKWMIVQLSDLCVHLFTQAAILVH >gi|283548478|gb|GG730299.1| GENE 2455 2655911 - 2656693 745 260 aa, chain + ## HITS:1 COG:YPO0707 KEGG:ns NR:ns ## COG: YPO0707 COG1684 # Protein_GI_number: 16121026 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FliR # Organism: Yersinia pestis # 5 257 4 257 257 239 55.0 5e-63 MRETDVTQLSNLILGMWFPFVRIMAFIHYAPVLDNAALTIRIRIILSLALAFIITPLIPH PVPDNLLSINSIILTAEQFLWGMLFGLMLQFLFLALQLAGQILSFNMGMSMAVMNDPSSG ASTTVLAEMINIYAVILFFAMDGHLLLVSILFKGFTYWPIGNALHPQSLRTISLALGWVL AAATLLALPTTFIMLIVQGCFGLLNRIAPPLNLYSLGFPINMLAGLICFATLLYNLPDHY LHLANFVLQQLDALKGHYGG >gi|283548478|gb|GG730299.1| GENE 2456 2656683 - 2657822 1180 379 aa, chain + ## HITS:1 COG:YPO0706 KEGG:ns NR:ns ## COG: YPO0706 COG1377 # Protein_GI_number: 16121025 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhB # Organism: Yersinia pestis # 4 377 3 376 377 394 51.0 1e-109 MADSSSEEKTEKPSAQKLRKARQEGQIPRSKDMGLAASLFAAFMVISSSFPWYEDFVRES FISVHQYAQNINDPDIIGQFLEHHLLILGKFILTLLPMPVAALFASLVPGGWLFLPKKIL PDFSKLSPLKGISRLFSTDHLVDTGKMTLKAIVLLVMLWISVRNNVAAFLGLQELYFKQA ISDGLALYSSIMRNFVILFVFFAVIDVPLAKKMFTKGLKMTKQEVKEEYKNQEGKPEVRA RIRRLQRQMAMGQIRKVVPKADVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIR QVAAESNIEIVEFPKLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMKHWRDGSQARPS LNRHISIPKEVLKLDAENN >gi|283548478|gb|GG730299.1| GENE 2457 2657806 - 2659899 2283 697 aa, chain + ## HITS:1 COG:ECs0257 KEGG:ns NR:ns ## COG: ECs0257 COG1298 # Protein_GI_number: 15829510 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis pathway, component FlhA # Organism: Escherichia coli O157:H7 # 125 697 7 579 579 1006 91.0 0 MPKTTKQLLALLRNGNIGIPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSA KRPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHMGAGAAGKVIESFGQVVIGGNFVV GFVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQARR KDVAGEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYDLSAEAAFQQYVLM TIGDGLVAQIPSLLLSTAAAIIVTRVSDSGDIATDVRSQLLASPSVLYTATSIMFVLAVV PGMPHFPFLIFSALLGFTAWRMSKRPKVAETEEKNLETLTKTIAETTEQQVSWETIPLIE PISLSLGYKLVALVDKSKGNPLTQRIRGVRQVISDSNGVLLPEIRIRENFRLKPTQYAIF INGIKADEADIPSDKLMALPSSETYGEIDGVLGHDPAYGMPVTWIVPAQKAKALNMGYQV IDSASVIATHVNKIIRSYIPELFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYR ALLIDGVSLRDIVTIATVLVASSAVTKDHILLTADVRLALRRSITHPFVRKDELAVYTLN SELENLLANVVNQAQQSGKVVLDSVPVDPNMLNQFQTNMPQIKEQMKAAGKEPVLLVAPQ LRPLLARYARLFAPGLQVLSYNEVPDELELKIMGALS >gi|283548478|gb|GG730299.1| GENE 2458 2659937 - 2660698 626 253 aa, chain - ## HITS:1 COG:yafL KEGG:ns NR:ns ## COG: yafL COG0791 # Protein_GI_number: 16128213 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Escherichia coli K12 # 1 253 1 249 249 385 75.0 1e-107 MFFVSAPRRLLPGLLSLCVVLSSPSVAKVQPGLSDAHLSYAAQLRMRNRARLLKHYYAQV KKQASYVVEGNAQSKSALRQQNRTLIKQHPEWFPGPLKASDHRWQELAENAHFLSSDHLH NITEVAIHRLEQQLGKPYLWGGTNPDEGFDCSGLIFYAYNKILAAKLPRTANEMYHYRRA TIVSNRDLRRGDLVFFHIHSRDIADHMGVYLGQGQFIESPRTGETIRVSNLSDDFWRDHY LGARRILTENTIL >gi|283548478|gb|GG730299.1| GENE 2459 2661048 - 2661788 658 246 aa, chain + ## HITS:1 COG:ECs0251 KEGG:ns NR:ns ## COG: ECs0251 COG3034 # Protein_GI_number: 15829505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 452 90.0 1e-127 MRKIAFFLAMLLLPCVSFAGLLSSNSPTAPVSKEYKQQLMGSPVYIQIFKEERTLDLYVK MGEQYQLLDSYKICNYSGGLGPKQRQGDFKSPEGFYSVQRGQLKPDSRFYKAINIGFPNA YDRAHGYEGKYLMIHGACVSVGCYAMTDNGIDEIFQFVTGALVFGQPSVQVSIYPFRMTD ANMQRHKFSYYKDFWAQLKPGYDYFEQTHKPPTVSVVNGRYVISKPLSHEVVQPQLASNY SLPETK >gi|283548478|gb|GG730299.1| GENE 2460 2661759 - 2662526 662 255 aa, chain - ## HITS:1 COG:yafJ KEGG:ns NR:ns ## COG: yafJ COG0121 # Protein_GI_number: 16128209 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Escherichia coli K12 # 1 255 1 255 255 528 95.0 1e-150 MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPI AKLVQDYPIKSCSVIAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLSGYKSLETG NFRPVGETDSEKAFCWLLHKLAERYPRTPGNMTAVFKYIAMLAGELREKGVFNMLLSDGR YVMAFCSTNLFWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKI MPGEWALFCLGERVV >gi|283548478|gb|GG730299.1| GENE 2461 2662689 - 2663267 708 192 aa, chain - ## HITS:1 COG:STM0310 KEGG:ns NR:ns ## COG: STM0310 COG0279 # Protein_GI_number: 16763693 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Salmonella typhimurium LT2 # 1 192 1 192 192 369 97.0 1e-102 MYQDLIRNELSEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAM HFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYVFSRYVEAVGREGDVLLGIST SGNSGNVIKAIAAAREKEMKVITLTGKDGGKMAGSADIEIRVPHFGYADRIQEIHIKVIH ILIQLIEKEMVK >gi|283548478|gb|GG730299.1| GENE 2462 2663507 - 2665951 2790 814 aa, chain + ## HITS:1 COG:ECs0248 KEGG:ns NR:ns ## COG: ECs0248 COG1960 # Protein_GI_number: 15829502 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli O157:H7 # 1 814 13 826 826 1614 95.0 0 MMILSIIATVVLLSVLFYHRVSLFLSSLILLAWTAALGVAGLWSVWLLVPLAIILVPFNF TPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPQL TAEEQAFIDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSA YAQARVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKNHYLPRLARGQEIPCFAL TSPEAGSDAGAIPDTGVVCMGDWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEK LLGGEEELGITCALIPTSTPGVQIGRRHFPLNVPFQNGPTLGKDVFVPIDYIIGGPKMAG QGWRMLVECLSVGRGITLPSNSTGGVKSVAMATGAYAHIRRQFKISIGKMEGIEEPLARI AGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGES NFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLF KHIGHVGSNKVRSFWLGLTRGLTSSTPTADATKRYYQHLNRLSANLALLSDVSMAVLGGS LKRRERISARLGDVLSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYKAEQAMDDLL KNFPNRLVAGLLSVVIFPTGRHYHAPSDKLDHKVAKILQVPSATRSRLGRGQYLTPSEHN PVGLLEEALLDVIAADPIHQRICKELGKNLPFTRLNELAHNALAKGLVDKDEAEILVKAE ASRLRSINVDDFDPEELATQPVKLPEKVRKVEAA >gi|283548478|gb|GG730299.1| GENE 2463 2666060 - 2666827 660 255 aa, chain + ## HITS:1 COG:STM0308 KEGG:ns NR:ns ## COG: STM0308 COG0388 # Protein_GI_number: 16763691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 1 255 1 255 255 468 85.0 1e-132 MPGLKITLLQQPLIWMDGPANLRHFDRQLETVNGRDVIVLPEMFTSGFAMEAANKSLPQE EVVSWMRAKAQQTNALIAGSAAIQSERGPVNRFLLVEPEGDVHFYDKRHLFRMADEHQHY QAGEARVIFVWRGWRILPLVCYDLRFPVWSRNRNDYDLALYVANWPAPRSLHWQVLLTAR AIENQAYVAGCNRVGTDGNGHHYRGDSRVINPQGEVIATAEPHQATRIDAELSLSALREY REKFPAWQDADPFTL >gi|283548478|gb|GG730299.1| GENE 2464 2667011 - 2667421 447 136 aa, chain + ## HITS:1 COG:STM0307 KEGG:ns NR:ns ## COG: STM0307 COG3678 # Protein_GI_number: 16763690 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Salmonella typhimurium LT2 # 1 134 1 134 135 195 79.0 2e-50 MKNFVRMTLLAATVAGASFSTFAANVSNVPAPAQDPVVQHLKLTNDQVAQIKKLHQQLET NVGQISVKDVKDGALIDVIKSGKWDEAAVKNQLSAFSNIEQQARYYRVKYYFDLNKVLTP EQRQQVQKDIAQTLSE >gi|283548478|gb|GG730299.1| GENE 2465 2667437 - 2668156 452 239 aa, chain - ## HITS:1 COG:no KEGG:ECL_00059 NR:ns ## KEGG: ECL_00059 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 23 232 13 220 226 99 33.0 1e-19 MNRLSEQARYVPELPRNAELLRITGIRLQRIHFFDDASLDVREVLSQVRTPLPLDLFFKH LSVTAKQQLFMWQMQRVLALPGSYSLNLSVRMLTCPSWISRLTKQTHQGRIVIEIQDPGT MMRLEKAEQQAVGIAIKTLVRHGFRVWLDDVSPELFFVWRLSGIRFDAIKIESGMFHQFR SSEWQLRVLVNQFRGLGERIVIEGVETAQDYAICRMSGADAVQGFFFEQETVLKGLNHC >gi|283548478|gb|GG730299.1| GENE 2466 2668158 - 2669822 1298 554 aa, chain - ## HITS:1 COG:VC0393 KEGG:ns NR:ns ## COG: VC0393 COG3307 # Protein_GI_number: 15640420 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Vibrio cholerae # 10 535 21 568 597 153 28.0 8e-37 MNALNLIAPLPAQKVLLIISLLFWCGVMHLYWPNNGGSGLSLPLNITSWIYAAVLAASTA MLLPRRRWRITVPAAGFIVGALILTLLCLLTPDVWQPEALLVAGALLGGVLIYLVTLQIP LTAHSLTALLALLWGACVIECLAFIYQYWHWPGVDYWEFAWRHGTRPYGIFQQVNLLASF TACGVLLSALLFLRLRGRYRIVGGIALAMMGFVLHESQSQTGYLSLLVGEVLLLAVFPVQ RRTLLRLLLPLALGMATGAAARHFLSVATVDHLTTSHVRWTVLKTSLALFAERPWMGWGV GSFAAIFLERAGPLGLSSISHPHNELVLWLVEGGLVGLAGALCFIAGGLWLWLHGNRWRR ACLVAALPVVIHMLTEYPVRQSTAHWLVLILLLRCADSARKRVRLTRLTTSLIRVLAVIS FLIATPLLLLTLQTQQQLTLAERQSTQWQLAESLPVGGWLLATRYRFDLQMGYLQRYQRT QDARWLEAVRRWAPGYVRAHPDPNIAFTQILLALQQRDLVEARRLATRFYLIYPNDRRIS WLQDARRPFNQNME >gi|283548478|gb|GG730299.1| GENE 2467 2669827 - 2670369 450 180 aa, chain - ## HITS:1 COG:yfcP KEGG:ns NR:ns ## COG: yfcP COG3539 # Protein_GI_number: 16130268 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 6 179 18 178 179 79 31.0 4e-15 MTFRTLIAVSALLFGATIQADTKLVGGDMYFHGTIRALACSLAPGGDKIEVDFGQIATQD LYLSGRSKPEKFSIQLRDCNPEVFRGISVTFSGKEDAELTDHLALDSSEQGGASGIGIGM SEEDGTAIRLDESTSVTEITEGSMTLNFLAWVAAEPSAIKNQSLEYGPFSASGTWTLNYQ >gi|283548478|gb|GG730299.1| GENE 2468 2670379 - 2671443 910 354 aa, chain - ## HITS:1 COG:STM0174 KEGG:ns NR:ns ## COG: STM0174 COG3539 # Protein_GI_number: 16763564 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 9 354 4 359 359 73 23.0 5e-13 MSVLRKALLWVVLAGCPLAGQAFTQGEGEPEGGSPHQYDIELSSLDVSKNHVGGRTEPFT WNLGSWYVVNFYCEQADISREPIYYTTTTTMPPSDQGANRFRLNEYLDVEVQVWVAGRYN KYVQAPFTNVSNRNSNNSCKKRKGYTRATNVESGSKGKVTFIVTKPIINGINITSQSLVE VAGRMGGAGPTPTTAISRVVIKSGLITVPDKCTFNRGDKISIEFGDLPGSAAKLNGTNYS KSIPIHVVCEGGSFDQGALNINLGVQTTTASGTAGFNGNLLGTLSGGQKRDDLGIMLKDE SGGTVVPNQFYNVKGFYQNQGDWNLTAAPVAKPGVGSVKEGEFEASATVVAQFQ >gi|283548478|gb|GG730299.1| GENE 2469 2671440 - 2672045 585 201 aa, chain - ## HITS:1 COG:ECs5274 KEGG:ns NR:ns ## COG: ECs5274 COG3539 # Protein_GI_number: 15834528 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 28 200 60 214 215 59 25.0 4e-09 MKKMLCALLMAGMACQAQAASGRQDMSNVSGEYGNVRFHGRVYVSPCVLDMASRDQTINL GDISASQFRHGGDRSDPVLVTLYLNGCLKGSGHTLRDFPGQTSEMPELAYSTVERGVSMT LMAEGAPENSDLGRIRGDVRGAGIRLLTERNQLIHLNQPQRMWILKPGDNAIHFLAALES FGSEVSAGEFSGLVRLKLEYL >gi|283548478|gb|GG730299.1| GENE 2470 2672058 - 2672834 643 258 aa, chain - ## HITS:1 COG:YPO0699 KEGG:ns NR:ns ## COG: YPO0699 COG3121 # Protein_GI_number: 16121020 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Yersinia pestis # 28 250 19 235 239 226 48.0 3e-59 MNNQAFYSVQRWLKPVACGLLFIAGINTSWAGIALDRTRMIITGDARSVSANLTNTSPSI PFLAQSWVEDANGTKITTPLMVLPPLQRINGGQKGIARVTKTSGVSALPQDRESLFYLNV REIPPKPDKPNVLQLAMQSRIKLFYRPTAIVPETPGAVWQNQLVFHKQGQRWTVDNPTPY FVTLIGLSRKPEAQGGGRLTDFPGIMVSPKSSLDFSVTDGSVSQFSMMYVNDFGGHPELK FSCSGSVCKALPMEQQPR >gi|283548478|gb|GG730299.1| GENE 2471 2672861 - 2675332 2462 823 aa, chain - ## HITS:1 COG:YPO0698 KEGG:ns NR:ns ## COG: YPO0698 COG3188 # Protein_GI_number: 16121019 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Yersinia pestis # 26 822 21 822 826 695 44.0 0 MITLKTDKKRLALFIALVCASSWAEADEAIEFNTDVLDASDRHNVDLQRFSEGNFVTPGE YLLDVRINSQEIPQQSIRYIVDPANSHKSMACLTPQQLELLALKEEALTYIQPISATCYD ISRLPGVVLNNSAGVLDITVPQAWMKYTDPDWTPPERWDNGVAGLIFDYSVSGQATHYEQ GGDRYRSLSGYGQTGFNFGAWRFRGQYQANYASDDNRGRIDWDQIYAYRPLPMQAAKLTV GEIYLNSQVFDSVRFTGANLASDERMLPPNLQGYAPEVHGIARSNAKVTVSQQGRVIYQT TVPAGPFNIQDLHGSVRGTLDVRVEEQDGSVQTFQVNTADIPYLTRPGYVRYNAAVGKPS RYNHDVQGPAFYSGDFSWGVSNAWSLYGGALLTGDRYNAWSMGIGRDLSWLGALSADATQ SVSRVKHQDQQKGMSFKLSYAKTFDEYNSAITFAGYRFSQRNFRTFSQFLDEQYENNNSA GNEKEMYTITGNKTFFADDPQLATTLYLTYTHQNYWDRGSQDRYGLSMGHSFSFAGIQGI SANLAAYRSEYQGKRDDSLSLSISVPWSDGRSMDYELQNSGSQTSQMVSYSDNHDRNNPW RLRAGVSGEGHTAFDGYYKHRSMMAELESNVSWQQSRYFSVGGTMRGGFTATRHGAALHN SQASMNTARVMVDTDGVANVPLNGEQAHSNRFGIAVVPDVVSYHSFDTRIDVDAMDEDIS ATKAIVTNTLTEGAIGYQHFAVAQGQKMMALLRLKDGSVPPFGAEVFNANGVSVAMVMEN GMAWIAGVNPAERLSVAWAGRAQCHLQVPQQLNPEGNVLLPCE >gi|283548478|gb|GG730299.1| GENE 2472 2675374 - 2675829 124 151 aa, chain - ## HITS:1 COG:ZfimI KEGG:ns NR:ns ## COG: ZfimI COG3539 # Protein_GI_number: 15804890 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 EDL933 # 1 150 68 214 215 58 26.0 3e-09 MRMRGNIIEAACYVDPRDRSLLVEFDDLSVRDISGRPEKVSAHDFSIHLLGCSLGDSQHP GNVFQRANITFSGASDSNNPDYLSVQSETENLAIEIYDSKGQQIRLGEPSPDYALNPGKN TLNFTAYLISRDGRMTSGEFTAVTHFVVNYL >gi|283548478|gb|GG730299.1| GENE 2473 2675992 - 2676540 530 182 aa, chain - ## HITS:1 COG:YPO2759 KEGG:ns NR:ns ## COG: YPO2759 COG3539 # Protein_GI_number: 16122963 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Yersinia pestis # 22 181 17 175 176 72 31.0 4e-13 MKMKNVAVACALMAGMTFTASSAFAAKNVEPTNGKIHFTGSLVNSACGLAPESSPVQVNF GEIPTSQLKDNQRAGVKHAKIVLQGCDTTVAKTATVTYTPATIDSDNNALAAFTSGTAKG AGIGMVDSGNQDVEWGKAASQVNITDGETDIDFVAYLQANNASAAVTPGDFESTVNFQID YQ >gi|283548478|gb|GG730299.1| GENE 2474 2677185 - 2677973 316 262 aa, chain + ## HITS:1 COG:no KEGG:ROD_35181 NR:ns ## KEGG: ROD_35181 # Name: not_defined # Def: putative transcriptional regulator # Organism: C.rodentium # Pathway: not_defined # 19 226 9 206 242 79 29.0 1e-13 MISHIPINKIKSVIIGDGLVFRPNKNTLKDLASGEMATLNNVATQLLLYLLQNGKEISSR DEILLNVFQHNGARATDANLNQHISFLRKAITSTGHPAELIITIPRMGFRMGDVNINIQQ LEEAKTPARIANVASRLNKKKRNHWPVAITTLITGIAVLATAWLTWIPNEIAMTDAAILR TINYEQCRVHILGNALTDTITEKKALDIFKSVGISPNCSHPKDLYLNTWASNHNLVEWSF AAECGLKLGYYHCISQYRHYEE >gi|283548478|gb|GG730299.1| GENE 2475 2677975 - 2678493 324 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085854|ref|ZP_06571226.1| ## NR: gi|291085854|ref|ZP_06571226.1| hypothetical protein CIT292_08676 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_08676 [Citrobacter youngae ATCC 29220] # 1 172 5 176 176 346 100.0 3e-94 MKRESDHSPLLWSVVIAIFGLATIAFFIIAGNAKKQEISFSCSSEFTSILDIQNSKKELT GIMLITSYNSGHLSLSVQGKFKSDDGEFTVSRKLFFRYARPLGHTAGVFMLTPDGREKNP DDDATDAIDYLFFDAYERADKLYMLKHLNEETVLIGDNFSPRFACVMNHFVG >gi|283548478|gb|GG730299.1| GENE 2476 2678858 - 2679595 618 245 aa, chain - ## HITS:1 COG:dnaQ KEGG:ns NR:ns ## COG: dnaQ COG0847 # Protein_GI_number: 16128202 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Escherichia coli K12 # 4 245 1 243 243 453 90.0 1e-127 MTVMSTGITRQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRL VDPEAFGVHGIADEFLLDKPTFAEVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRD IPKTNEFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLM MTGGQTTMAFSMEGDSQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQKKGGS CLWRA >gi|283548478|gb|GG730299.1| GENE 2477 2679651 - 2680118 460 155 aa, chain + ## HITS:1 COG:ECs0210 KEGG:ns NR:ns ## COG: ECs0210 COG0328 # Protein_GI_number: 15829464 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Escherichia coli O157:H7 # 1 154 1 154 155 291 92.0 3e-79 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSEGYNLTTNNRMELMAAIVALEALK EQCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRLDAALGPHQIKWEW VKGHAGHPENERCDELARAAAMSPTQDDIGYQAES >gi|283548478|gb|GG730299.1| GENE 2478 2680115 - 2680837 505 240 aa, chain - ## HITS:1 COG:STM0262 KEGG:ns NR:ns ## COG: STM0262 COG0500 # Protein_GI_number: 16763645 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Salmonella typhimurium LT2 # 1 240 1 240 240 439 87.0 1e-123 MKPARIPQTVVAPVSWDDLPWGEYYREALEHQLNPWFAKMYGFHLLKIGNLSAEIDSEAC AVSHQVNVSLQGSPMQVTADPLHLPFADKSVDVCLLAHTLPWCADPHRLLREADRVLIDD GWLILSGFNPVSLMGLRKLVPVLRKTSPYNSRMFTLMRQLDWLSLLNFEVLHYSRFHVLP WNRKGGKMLSAHIPALGCLQLVVARKRTIPLTLNPMKQNKSKTPIRQAVGATRQYRKPDA >gi|283548478|gb|GG730299.1| GENE 2479 2680871 - 2681626 371 251 aa, chain + ## HITS:1 COG:STM0261 KEGG:ns NR:ns ## COG: STM0261 COG0491 # Protein_GI_number: 16763644 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Salmonella typhimurium LT2 # 1 251 1 251 251 452 84.0 1e-127 MNLNSIPAFQDNYIWVLSNNDQHCLIVDPGEAAPVLKAIAEHNWIPEAILLTHHHQDHVG GVKELLQHFPQIVVYGPAETQDKGTTRIVEDGDIALVLGHEFKVIATPGHTLGHICYFNH PYLFCGDTLFSGGCGRLFEGTATQMYQSLKRISALPDDTLICCAHEYTLANMKFALSILP HDSFINEYYRKVNELRVKKQMTLPVILKNERRNNIFLRTEDVDLINEINKETILQQPEER FAWLRSKKDTF >gi|283548478|gb|GG730299.1| GENE 2480 2681836 - 2683056 804 406 aa, chain + ## HITS:1 COG:STM0260 KEGG:ns NR:ns ## COG: STM0260 COG0741 # Protein_GI_number: 16763643 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Salmonella typhimurium LT2 # 1 406 50 455 455 739 93.0 0 MDDGTSIAADQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAEPYMYWIA GQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDARRDV VASTTAALDMMQRLNKMFDGDWLLTIAAYNSGEGRVMKAIKTNKARGKPTDFWSLPLPQE TKLYVPKMLALSDILKNSKRYGVRLPTTDESRALARVRLNSPVEMAQVADMAGISVSKLK TFNAGVKGSTLGASGPQYVMVPKKHAEKLRESLASGEIAAVQSTLIADNTPLNSRSYKVR SGDTLSGVASRLGVSTNDLKQWNNLRGSSLKVGQSLTIGAGTSAQRLANNSDSITYRVRK GDSLSSIAKRHGVNIKDVMRWNSDTDNLQPGDQLTLFVKNNGMPDS >gi|283548478|gb|GG730299.1| GENE 2481 2683106 - 2683876 692 256 aa, chain - ## HITS:1 COG:ECs0206 KEGG:ns NR:ns ## COG: ECs0206 COG0500 # Protein_GI_number: 15829460 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 # 1 256 1 256 256 409 80.0 1e-114 MTTRSHHDNVEKQFGSQANAYLTSAVHASGRDLQRLGERLSAFPQARVLDMGCGAGHASF VAAQHVNQVVAYDLSSQMLEVVAKAAKEKELDNITTRQGYAESLPFEDNAFDVVISRYSA HHWHDVGRALREVNRILKPGGVLIVMDVMSPGHPVRDIWLQTVEALRDTSHVRNYSSGEW LSLINDANLIADTLLTDRLPLEFSSWVARMRTPAALVDAIRLYQQSASADVKAYFALQEE GSFTSDTIMVEAHKAG >gi|283548478|gb|GG730299.1| GENE 2482 2683955 - 2684755 540 266 aa, chain - ## HITS:1 COG:ECs0205 KEGG:ns NR:ns ## COG: ECs0205 COG3021 # Protein_GI_number: 15829459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 265 1 265 266 508 96.0 1e-144 MRKNTYAMRYVAGQPAERILPPGSFAHIGQALPAGVPLSSEDRIRVLVWNIFKQQRAEWQ SVLKNFGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVY CCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAH HSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVS EASVLVTRASDHNPLLVEFSPGKPEL >gi|283548478|gb|GG730299.1| GENE 2483 2684887 - 2686062 1396 391 aa, chain - ## HITS:1 COG:STM0257 KEGG:ns NR:ns ## COG: STM0257 COG2814 # Protein_GI_number: 16763640 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Salmonella typhimurium LT2 # 1 390 1 390 391 592 97.0 1e-169 MPLALFALTISAFAIGTTEFVIVGLVPTIAEQLAISLPSAGLLVSIYALGVAIGAPVLTA LTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLV PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALISSQLLIPA NIPGRAAASIRDQLKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMLFQVTASTQYAALATILVM GIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVEHYGLAQ TPWIGALIVLAAFLLMGVSGRLDKPTRVALG >gi|283548478|gb|GG730299.1| GENE 2484 2686167 - 2687081 669 304 aa, chain + ## HITS:1 COG:STM0256 KEGG:ns NR:ns ## COG: STM0256 COG0583 # Protein_GI_number: 16763639 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 304 1 304 304 568 97.0 1e-162 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP EMTLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLFTSYRKIIASPDYIARFGKPE TVEQLKQHLCLGFSEPVSLNTWPIACRDGQLHEVECGISSNSGETLKQLCLSGNGIACLS DYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIRTAPEGA VKEG >gi|283548478|gb|GG730299.1| GENE 2485 2687103 - 2687906 1051 267 aa, chain - ## HITS:1 COG:STM0255 KEGG:ns NR:ns ## COG: STM0255 COG0656 # Protein_GI_number: 16763638 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 1 267 1 267 267 504 98.0 1e-143 MTIPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAAVGQAIVESGVPRNELY ITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPGDAVSVEEFMQALLEAKEQ GLTREIGISNFTIPLMEKAIAAVGADNIATNQIELSPYLQSRKVVDWAKAHGIHITSYMT LAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTRRENLASNLLAQDLHLD AEDKKAIAALDCNDRLVSPEGLAPAWD >gi|283548478|gb|GG730299.1| GENE 2486 2688063 - 2690990 1451 975 aa, chain - ## HITS:1 COG:Z0268 KEGG:ns NR:ns ## COG: Z0268 COG3209 # Protein_GI_number: 15799917 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 EDL933 # 1 946 1 967 1404 1123 61.0 0 MVGKPAARQGDMTQVGGPIVQGSAGVLIGAPTGVACSVCPTGEASPKYGNPVNPLPGAKV LPGETDIALPGPLSFVLSRSYSSYRTRTPAPVGLCGPGWRLPSDLRLQVRDDGLILNDNG GRSVHFEPLAPGEILYSRSESSWLARGGAESQHNSHPLSAVWGTLPEAVRLCPHIYLATN SPQGPWWVLGWPERVPGANEVLPAPLPPYRVLTGVVDGYGRRLVYHRDGAYDGAVTAVTD GTGRRYRLMLTTQEQRAAQAASASSSSPSFSSFPSSSRSSPSWPEALPATAYGEDSGVRL SAVWLVEDPAYPDDLPSQPLVRYGYTARGELEAVYDRSGAEVRRFEYDAGHPGRMTAHRY AGRPASRYRYDDAGRVTEQVNPEGLGYAFTYEKNKITVTDSLGRREVLHTEGEGGLKRVV MKEQADGSVIRSGYDGSGRLEWRTDAAGRKTVYSPDVATGKLTAVTGPDGRKTKYSYNDR QQLITTVYPDGRRSTREYDRQGRLVKTVSREGKATEYAYGSAHDSQPSVVKDSTGSRRIR RGRNGEVVSRTDCSGYETRYDYNRYGQQTAVHYEEGLSVYRRYDSRGRLLSVKDSLGRET GYEYNDAGDLTAVIRPDGQRRVAEYDAAGRVVRLENENGAEMCFVYDALNRVTEQRGFDG RTQRYEYDRSGRLARSEDEDLVTHWRYDASDRLTQRTVNGQEAERWQYDEHGWLTVLSHV SEGQRVTVHYGYDNKGRLTGERQTVHNPETEELQWAHSVRHGYNDQGQAVREVYDGLPVA EWLTYGSGHLAGLKLGNQPLVEYTRDRLHRETERLFGAWRMETGYTAGGQVAYRHLPETA LNREYRHDDSGFLTGIDGAGESWRYGYDGAGRLSAAGLTTREISVDIPYETDGAGNRVEA GAARRDANGLPGLFADNRVAEDGRYVYRYDRYGNLVEKGERVPAGMGERADMLQAHLFCV KSATCSGALIRTLHA >gi|283548478|gb|GG730299.1| GENE 2487 2691160 - 2693274 1500 704 aa, chain - ## HITS:1 COG:ZvgrE KEGG:ns NR:ns ## COG: ZvgrE COG3501 # Protein_GI_number: 15801686 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 697 13 710 714 1135 78.0 0 MSTGLRFTLEVDGLPPDALVVESFHLSQSFSTLFSLDISLVSQQLPSIDFSQVLEKTAHL KIWQGTEIQRRVNGIVTWFEQGENDGHQMLYSMKVRPPLWRAGLRQNSRIFQNEDIKSIL GTILQENDVTDWSPLFSEAHPAREFCVQYGETDYDFLARMAAEEGLFFYEEHSPDSDDQS LVLCDTVRFLPEAFEIPWNPNTRTEVSTPCISQFRHSAQIRPSSVIGKDYTFKRPGWAGR FEQQGQNQDYQRTQYEVFDYPGRFKDSHGQNFARWQVEGWRNNAEEAQGKSRSPAIWPGR RIQLTEHPQAGLNREWQVVSSDLQGKQPLAVAGRSGSGTTLENDFTVIPADRTWRPRPME KPSVDGPQSATVTGPEGEEIFCDEHGRVRVKFNWDRYNPANQDSSCWIRVVQAWAGPGFG NLAIPRVGQEVIVDFLNGDPDQPIIMGRTYHQENRSPGNLPGTKTQMTIRSKTYKGSGFN ELMFDDATGKERVYIHAQKNMNTEVLHNRTTDVTNNHTETIGNNQVISVTNNQIQTIGVN QVESVGSNQVIKVGANQVETVGIVRALNVGLAYQTTVGGIMNTSVALMQSSEVGIFKSLN VGMKYNVNVGRNASVNVGNSKTESTGKTAVYSAGEHLELVCGEARLVLTSDGGIFLNGKH LELQGVDSINGDSKLISWNCGVSKKPPEASEQQDSPDPSDLIMY >gi|283548478|gb|GG730299.1| GENE 2488 2693489 - 2694007 584 172 aa, chain - ## HITS:1 COG:ECs0234 KEGG:ns NR:ns ## COG: ECs0234 COG3157 # Protein_GI_number: 15829488 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1 172 1 172 172 347 98.0 8e-96 MPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEMLVQEFLHNVTVPTDPQSGQPA GQRAHKPFIFTVALNKAVPLLYNALASGEMLPKTELHWWRTSVEGKQEHYFTTRLTDSTI VDMKLHMPHCQDPAKREFTQLLEVSLAYRKIEWEHVKSGTSGADDWRAPLEA >gi|283548478|gb|GG730299.1| GENE 2489 2694643 - 2695146 411 167 aa, chain + ## HITS:1 COG:ECs0233 KEGG:ns NR:ns ## COG: ECs0233 COG3516 # Protein_GI_number: 15829487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 167 1 166 166 229 76.0 2e-60 MSKDYNGSVAPKERINISYVPKTDGEPSEVELPLNILIVGDTGNSQETAPLDERQMVSID KHSFNSVMAEASISLNFAVPAALKDNEKNDDEMNVSLEIKSLHDFSPDSVAKQVPELNKL LELREALTALKGPLGNLPAFRAQLQALLENEESREQLLREIGLAENQ >gi|283548478|gb|GG730299.1| GENE 2490 2695437 - 2696909 1216 490 aa, chain + ## HITS:1 COG:ECs0231 KEGG:ns NR:ns ## COG: ECs0231 COG3517 # Protein_GI_number: 15829485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 852 88.0 0 MSLQEEELVSTRTEQGSHTPSLLDEIMAQTRIQPGADGYDIARQGVTAFVASLLQSSSPA EPVNKLAVDSMIADIDARISRQMDAIIHAPQFQQLESFWRSMKALVDRVDFRENIKVNIL HVTKEELLDDFEFAPEITQSGFYKHVYSSGFGQFGGEPIAAVLGAYEFKNTTPDMKLLNY VSAVGAMAHAPFLSSVSPEFMGLNSWTELPNIKDLYAIFESPAYTKWRALRDSEDSRYLG LTAPRFLLRQPYSATENPIRSFNYAEDVSHSHEHYLWGNTAWMLASNVADSFAKYRWAPN IIGPQSGGAVKDLPVHLYESMGQIQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAA FFSANSVQKPKHFPGKDAETNYKLGTQLPYLFIINRLAHYIKVLQREQLGSWKERSDLER ELNIWVRQYVADQENPPADVRSRKPLRGAKVEVLDVDGEPGWYQVAISARPHFKYMGASF ELSLVGRLDK >gi|283548478|gb|GG730299.1| GENE 2491 2696906 - 2697322 196 138 aa, chain + ## HITS:1 COG:ECs0230 KEGG:ns NR:ns ## COG: ECs0230 COG3518 # Protein_GI_number: 15829484 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 138 1 137 137 182 68.0 1e-46 MIPERERPAGSLFERLENPPARNWREGRNIEAFRQSIRYSLRNILNTRSGSCRGTPELGI EEPEGSDNYRSAMSQAIVQCIECYEPRISHAEVRAALPQAANPQEITFHITAWVTFNGID DVLEFDMAPDGSQHYRVE >gi|283548478|gb|GG730299.1| GENE 2492 2697327 - 2699180 821 617 aa, chain + ## HITS:1 COG:ECs0229 KEGG:ns NR:ns ## COG: ECs0229 COG3519 # Protein_GI_number: 15829483 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 12 617 12 616 616 1060 84.0 0 MEFEERYYRQELNYLRQLSKQLATEKPHLARFLAEKGADPDIERLLEGVAFLTGNLRQKI EDEFPELTHGLIKMLWPNYLRPVPSMTLIEYSPDMDKTSVPIRIPRNEQFTTGAKGTQGN QVLSAYSDNDHDAAPPCTFTLCRDIWLLPVQLDQVEDRSTPRHGIIDITFAVAPGTDFTT LDLNRLRFWLGNDDNYTRYQLYLWFCEYLQGAELIAGEQSIPMPEFMLKAVGFEPEDAML PWPGNVHSGYRILQEFFCYADSFLFFDACGFPALPDRLTENRFTLRLRFSRPLPVDIQLY RGSLRLYCAPAINLFFHHAEAITLDHLRADYPLIPSRHYPDHYDVFSVNSVVSQTQDIFR KKEFGHPVTTPSVRQWPAFESFSHQMEYSRKREVVYWQHRTKTSLFHRGFDHTLAFIHAD GSHPDASLINNEVVSVSLTCTNRELPIHILPGDVTGTTGKNAAVASFRNITRPTQPLWPV IDGSLHWSLLSAMNLNYLSLLDADALKQVIANFDRHAIHHPQMARLSQQKLDAIERLETR PIDRLFTGIPVRGLASTLNIHPGAFVCEGEMYLLGAVLSHFLSLYASVNSFHMLTVVNTE SQESWKWAERTGQHPLI >gi|283548478|gb|GG730299.1| GENE 2493 2699144 - 2700232 701 362 aa, chain + ## HITS:1 COG:ECs0228 KEGG:ns NR:ns ## COG: ECs0228 COG3520 # Protein_GI_number: 15829482 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 361 1 359 360 602 79.0 1e-172 MGGKNRATPAHMNPDDTPVQDEQNTLRESFLQNACACNFFALSELLHRLASGDNETPELS LNTPPTQETIRFQADASLGFPVSDISALKQETSGLFRVTTTFMGLQGSQSPLPGYYLDHL AWKSVHEQSPVGDFLDMFSHRLTQFVWHIWRKYRYHVSFRNGGMDTFSQRMYSLVGLGHQ QLRDRLAISHSKMLAYAGILANPGRSPEIVCSLVAHCFDLNLSDVTLQNWQRRMVEIEPD QQNSLGCYTIKNGEKLACRSVLGNFVLGTSVPDLSGKFQLSINNLSRKQFLSFLPSGENF LPLAMFVSFVLRDQLAWDLHLGLAPEQVSTMRLGDNKSALLGWTSFLGDPGEHPSVTIRV RE >gi|283548478|gb|GG730299.1| GENE 2494 2700245 - 2701546 1121 433 aa, chain + ## HITS:1 COG:Z0258 KEGG:ns NR:ns ## COG: Z0258 COG3456 # Protein_GI_number: 15799907 # Func_class: T Signal transduction mechanisms # Function: Uncharacterized conserved protein, contains FHA domain # Organism: Escherichia coli O157:H7 EDL933 # 2 433 5 433 433 666 79.0 0 MEHDMAEGKARQQTLSLHVVNGSELESGRAARCLFTQGGDVGHSSECHWPVQDRHQDIPA KAFTISMHDGAFCLHPLAAPLWLNQAKVTVASELVQLRQGDEIQTGHLILQVYLNQGGMR HYDEEMASPETIVSNHDILSDTLLSTEGAPEYPGIQSRHQLADTVVNGFSTDPLLALQTE SLTTRGDPLAAIAPVRPSAPLSDPVTHGGINTPFMDLPSMYTDPQDGDDDAISPTNAAQR HLAVTPLLRGLGGTLAVHNTADADDFLEEAGRTLQATVKGLLELQQHRNSLSDKHLRPLE DNPLRLNMDYATALDVLFAEGKSPVHLAAPAAVSESLRNIRYHEEANRAAIVESLRVLLD AFSPQSLMRRFVQYRRSHELRKPLDDAGAWQMYCDYYDELASSRQQGFEMLFNEVYAQVY DRVLREKQREPEA >gi|283548478|gb|GG730299.1| GENE 2495 2701543 - 2702076 492 177 aa, chain + ## HITS:1 COG:ECs0226 KEGG:ns NR:ns ## COG: ECs0226 COG3521 # Protein_GI_number: 15829480 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 7 177 4 174 174 275 79.0 3e-74 MTRRFCRAWMAVALLTVSLSGCETAKKIGQVIQNPDIQVGKLADQPSQITITLLTEPDAN INADGEAAAVDVQLVYLSDDSKLQAADYDQLASTPLPDALGKNYIDHQDFSLLPDTIKTL PLVKMDEKTQFIGVIAYFSDDQTTQWKQIEPVEGTGHNYRLLVHIRQSSIEMKKEDD >gi|283548478|gb|GG730299.1| GENE 2496 2702079 - 2703410 792 443 aa, chain + ## HITS:1 COG:ECs0225 KEGG:ns NR:ns ## COG: ECs0225 COG3522 # Protein_GI_number: 15829479 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 443 1 443 443 781 87.0 0 MATTRNKVIWREGTLMRPHHLQQQQRYNDYVNNLRFRAVHDLSWGFTELSINNELLAQGK IMLDSASGTLPDGTVFSLPDQDALPDPLHPDNFPDEESRNVYLALPVASDVRGEISYGQQ IGRYRLNNADVRDLHSENGDARALTLGQLTPRIMSGADDMSAYVTLPLCRIKDRRADGSL MLDDSFIPSCQNIHVSARLREFLREVQEAIGGRANDLANRIGSPAQSGIADVAEFMMLQL LNRNQTRFTHRARRPQLHPEDFYLDLAGLLGELMTFTEPSRLPCPLDVYDHRNLTDTFKT LLPEVKRALHTVLSPRAVNLPLHLRDGIWQADVHDSALLQSATFVLAVAAKMETLQLQRQ FIQQSKISSPEKIRNMVSVQIPGIPLHTLMVAPRQLPYHAGFSYFELDKSSAAWADVAAT GAVALHVSGSFPDLNMQLWAIRG >gi|283548478|gb|GG730299.1| GENE 2497 2703415 - 2704179 758 254 aa, chain + ## HITS:1 COG:ECs0224 KEGG:ns NR:ns ## COG: ECs0224 COG3455 # Protein_GI_number: 15829478 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 252 1 252 253 426 86.0 1e-119 MDELSLSRPPLSGYESEGLRQYQLTLRGNSLNPMIDAATPLLGMVMRVAGMNSHAMPEHL FTQVVTDVQAVELLLQEQGYEPGVIISFRYILCTFIDEAALGNGWSNKNEWIKQSLLVHF HNEAWGGEKVFILLERLMREPKRYQDLLEFLYICFSLGFRGRYKVATQDQGEFEQIYRRL YHVLHKLRGDAPFPLLHQDKKIQGGRYQLIKRLTIRHVLSGGIIVLALFYLFYLLRLDGQ TQDILHQLNRLLAR >gi|283548478|gb|GG730299.1| GENE 2498 2704188 - 2706908 1142 906 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 133 878 120 807 815 444 36 1e-123 MIQIDLATLVKRLNPFAKQALEAAASECMNQQAAEITVSHVLIQMLAILRSDLRVITERA GISTDDLRQALTVENYATTRSVDSYPSFSPMLVEWLKEAWLLASAEMQQTELRGGILLLA LLHSPLRYVMPTAARLLTAINRDQLQQDFSGWTKESAESVMLSADGQVISAATDTGDSLL TRYAKNMTADARNGKLDPVLCRDNEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLAL RIVAGQVPDKLRDTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVNQSPKPIILFIDEAH TLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEP TSAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARV AINLSSPPKQISALTTLRHQCEAEIRQLEREIRIGLRSDTSRLTEVLVQYDETLTKLDEL EAAWHQQQALVQEIIALRKGLLDESAATGEEDNAVAVDQPIAGQPEPEIPPAARLVQLTA ELETLHHTQRLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITNLPQWLGDSIKGQEL AIKHLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMS EFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVRLDEVEKAHPDVLNLFYQAFD KGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHADSPETMHDALYPVLADFFKPALLARM EVVPYLPLSRETLSVIIAGKLARLDNVLRTRFGAEVVIEPEVTDEIMQRVTRAENGARML ESVIDGEMLPPLSLLLLQKMAANTAIARIVLGVTEGAFTADVEDAPDDSLSDNMHPEPET EDETVL >gi|283548478|gb|GG730299.1| GENE 2499 2706905 - 2707633 485 242 aa, chain + ## HITS:1 COG:no KEGG:SG1033 NR:ns ## KEGG: SG1033 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 242 1 245 245 390 86.0 1e-107 MSRMQTLLIMMLLPGLFPGAARAETPAKQAVAVLPGIVVPETNTQATLSAMVACRREPAA LERLDCYDHILAPEQPGFDGALVKARYEGEAWKRAFAQEKQRPNNSTTLMMTQNGGERPT VIITTPAIGNVPPRPVLMFSCVDNITRMQVALTHTMTPSDITVTLTTDVRQIQSRWFIRE NGTLLESSRGLSGIDEIKQLFGAKTLTIDTGTESAARKLTFNIDGLAKTIVPLRDACHWA GE >gi|283548478|gb|GG730299.1| GENE 2500 2707635 - 2709044 1016 469 aa, chain + ## HITS:1 COG:YPO3602 KEGG:ns NR:ns ## COG: YPO3602 COG3515 # Protein_GI_number: 16123744 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 464 4 459 465 369 48.0 1e-101 MDLRDPNIWISHLLENLPADKLVCALKDDNPDWEYIDGEMLKLGSLAHSQLDIPEIQRRG LMLLASESKDFRLLAHLLRTLQHAGDPLLALRLLALYVEHYWIQASPQNAVHKQRLAAQV IKRFEGGVESFADNADTTQRDSLLTELAKLAQRWQEHSVPMLAQAADDLSSQYRRAFHRA APGQPALPSVDSPALTAPPSAPASVTTSTIAAVPTVDIESHDDKSWRDTLLKVAAILCER QPDSPQGYRLRRHALWQAITSVPQAESDGRTPLAAVPADMTADYQTRLNNADLALWQQVE KSLLLAPYWLDGHYLSAQTAQRLGYTSAAEAIRDEVARFLARLPQLASLLFNDRTPFMNE QTKQWLAASASSQTAPIVRTDEETEAVRQCFSEQGLEAALQYLEKLPGGDPRDRFLQQYL GAQLIEDAGMVQLAQQQYQMLFKAGLRITLADWEPSLLEQLEKKFMAEK >gi|283548478|gb|GG730299.1| GENE 2501 2709065 - 2712586 2901 1173 aa, chain + ## HITS:1 COG:Z0250 KEGG:ns NR:ns ## COG: Z0250 COG3523 # Protein_GI_number: 15799899 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 31 1173 1 1144 1144 1944 85.0 0 MFRLPTSRLFSSLRSALRPAMPRFKVSATWLLALAWIVLLVWIWWKGPSWSLYDEQWLKP LANRWLATAAWALAALVWLTVRVMKRLQQLEKQQRQQREEEKDPLTIELTAQQRYLDHWL LRLQRHLDNRRYLWQLPWYMVIGPSGSGKTSLLREGFPSDIIYAPEAVRGVELRRYVIPH VGKQAVIFDADGLLFEQQEADVLHRRLWTTMLDWLVQKRARQPLNGLILTLDLPDLLTAD KRRREHLLHILRGRLQDIRQHLHCQLPVYVVLTRLDLLHGFAALFQSLDRNDRDAILGVT FTRHAHENDDWRAELNAFWQTWGEQLNNALPERMLTPGSRSSLFSFVRQIQGSREPLVSL LNGLLDGENMDVMLRGVYLTSSLQRGQIDDIFMQSAARQFRLGNSPMTAWPLVDTAPYFS RNLFPQTLLAEPNLAGESRVWLMQSRRRLSMFSATGGITALLLITGWHHYYNNNWRSGVT VLEQAKAFMSVPPPQGMDDYGNLQLPLLNPVRDATLAYGDWGERSRLADMGLYQGRRVGP YVEQTYLQLLEQRYLPALFNGLVKDMNAAPSESEEKLAVLRVIRMLEDKSGRSNEVVKQY MAKRWSGKFHGQRDLQLQLMSHLDYALQHTDWHAERQAGNGDAISRWTPYDGPVLAAQKE LSKLPVYQRVYQSLKTRALGVLPADLNLRDQVGATFDQVFTSGDDNKLIIPQFLTRYGLQ SYFVKQRDALVELTAMDSWVLNLTHSVKYSEADRAEIQRQLTEQYLSDYTATWRAGMDNL NVRNYESVAELTGALEQIISGDQPLQRALTALRDNTQPAVLSEKLDDKALKETMAEPDYQ LLTRLGHEFAPENGTLAVQKDKENTMQAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLR LDQNSSDPIFATRQMAKTLPAPLNRWVGRLADQAWHVVMVEAVHYMEVDWRDNVVKPFNE QLADNYPFNPRSSQDASLDAFERFFKPDGVLDAFYQQNLRLFMENDLSLGDGDNSVIIRE DVRRQLETAQEIREAFFSRQNGLGAQFAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYTA HLVWPNNMREGNESKLTLIGTSGKTPRSIGFSGPWAQFRLFGAGQLTGVQDGTFSVRFNV DGGAMVYRVHTDTEDNPFTGGLFSQFRLPDTLY >gi|283548478|gb|GG730299.1| GENE 2502 2712597 - 2713955 1011 452 aa, chain + ## HITS:1 COG:Z0249 KEGG:ns NR:ns ## COG: Z0249 COG3515 # Protein_GI_number: 15799898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 442 31 470 499 630 76.0 1e-180 MSQDILTQIIVTGSDPRGLPEFSALREEINKSSHPSQPELNWKLVESLALAIFKANGVDL HTATYYTLARTRTHGLAGFCEGVELLAAMISHDWDKFWPQDESARTGMLDWLNTRTGNIL RQQLSFSDTDLPLLHRTERALQLICDKLQQVELKRQPHVENLLYFVQNTRKRLEPQPKSS VGTPSQTTVRTLIYAPESTQPVTEENLPSLPDLPGMKVEVHHSTTENTASAASAASGRNC KGFMAGVACTTAVAAALWWWQVYPMQQQLAQVRDTAQGAATVWLASPELNSYGQRLQQLP DASPLQLLETGMQMMRTADSRWPESLQQQQATAQWNEILKTRAQSSPQMRGLQQARQNLR DFADLMMQRETEKQGFTLSYIKTVTWQAERLLNQETPLESLLTQYQDARAQGRNTEALEK QINEQLDGVLSRWLLLKNNVVPESATNVKSGK >gi|283548478|gb|GG730299.1| GENE 2503 2713978 - 2714457 260 159 aa, chain + ## HITS:1 COG:ECs0216 KEGG:ns NR:ns ## COG: ECs0216 COG3157 # Protein_GI_number: 15829470 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 244 71.0 6e-65 MANLIYLTLNGEKQGLISAGCCSLDSIGNKAQLLHLDHIMVYELTHGLSRDQNVNHHSVT IKKPVDKSSPLLGKAINDNEILTCTFDFYRTNRFGVNEKFYKLELKNARISDINLSISHV ITDSEVQPQESISFIYESINWEHCIAGTSAYSLWDERVF >gi|283548478|gb|GG730299.1| GENE 2504 2714483 - 2714650 97 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLRSKSQLNGSIYKGIPRTEKPQRDKPNTNIPERKSLTGTDKLNIWKKNKRRCL >gi|283548478|gb|GG730299.1| GENE 2505 2715362 - 2715820 74 152 aa, chain + ## HITS:1 COG:no KEGG:SG1025 NR:ns ## KEGG: SG1025 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 152 1 152 152 266 89.0 1e-70 MISIARIFLILAPLIISISSIHSTYANNVYYLSKNNCESGEEAELFDCLRNEVIESTITL RKAEDNIRLRINKWSEVKSAALDDAIPIALHRLDKSNQEFIRYRLAQCSFAESWGNGVGS FTRIYSCMAELNRQRAEQLIHSDIPDYTEGVK >gi|283548478|gb|GG730299.1| GENE 2506 2716393 - 2716833 120 146 aa, chain + ## HITS:1 COG:no KEGG:SEN1000 NR:ns ## KEGG: SEN1000 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Enteritidis # Pathway: not_defined # 1 146 1 146 146 177 62.0 2e-43 MNIKNLLYVLFIYNTASAHNIKTSDCSYDQLIQQDKVYWCLMDKYQQSILALKNEEISAE KRLKKYDTEGARGCNEDGTIDYEPYIHIARITFPELHRSFIIYREKQCKYASQSDGARPG YRSSISSLYCKTSMNLSQIQWIKNTI >gi|283548478|gb|GG730299.1| GENE 2507 2716843 - 2717208 142 121 aa, chain + ## HITS:1 COG:no KEGG:SeAg_B1090 NR:ns ## KEGG: SeAg_B1090 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Agona # Pathway: not_defined # 1 121 1 122 123 130 62.0 2e-29 MNNKYLFKIILMILFTLHSSLLFAVDKVIIEKMPQDLQDFFESADACEGWISDFDPSLEE TTYKIVESAIKENCSDIERKLSSMKNKYKSNKDCSARLTVYDDTIIIYDEYKNTRMKNKS N >gi|283548478|gb|GG730299.1| GENE 2508 2718400 - 2719227 228 275 aa, chain - ## HITS:1 COG:no KEGG:CKO_04348 NR:ns ## KEGG: CKO_04348 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 6 272 1 247 248 229 48.0 8e-59 MDNKYLFTLFLSVILVNGCSKSSIDTRKKDSITQRNVEVSSMPQLTDQDVFGNELTLEIS EEDIQNAVEEAQGQFEIPLNSAIVLVRSGSRAPDVMMQKEMQRYYQVSKFSGIPVTRKKH TIKPVISTKEVVSDPEAIVHDATGKSGVINANYMQALRYIAAKGRHKAVVVYWDDLEIGK YNSATKDVVWKKYNGEKLSGASLRYLIRFALVDVATGEWATYSPVNTETIAAPLTEKVAA STDEKNDTTEQIILSLKQRTCSIVVKDLVSRYGSK >gi|283548478|gb|GG730299.1| GENE 2509 2721234 - 2723999 1017 921 aa, chain + ## HITS:1 COG:ECs3081 KEGG:ns NR:ns ## COG: ECs3081 COG3468 # Protein_GI_number: 15832335 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli O157:H7 # 263 921 194 836 836 342 35.0 3e-93 MRNVFLLNKITAIILLLSSSYSVANTIAAGSVVDGETVTGGYDGYYDQYVYGTITNATLT EGALVAVYNSGSSDGSTVLDGADISFYDTSTGLNTTLIGTEDWTREPSISAYDNAVIRNT SLQSNSVMFLSDNAMAYSTVATGLDGTSTNNINVQDNAKLYDTTLLNGANISIQNSGEVN GVIAQDGSSVNAYDNGIINDAEVDKTSRIYISSYNEDVPTANNSIVYGSILNSGGLDVGT VIKEGGTLTLGGTSNVSTSRQATIEKGGKVSFRSNSLASQWDIYSTVSLADTAEEIEDSH VYAGGQLWLTSTTYSKGTGLAKNTTVDGGHMINNIGEDDNTSVINGGFYFLMDDGGKSAN LNIGQDSYAIISSGELNNTTVDGIMFIGNTGVLNYSSTSPAVSGALTVTQNGNVLVTHNS DMSASNVDLSGNMFLGDSVANNYAINTLNMNGGNMVFFVRKDNPTIGYSMLTLNSLAGSG SFWMNTNLASHQGNFLNVAGEANGIFDVYVRDTGVSPASDQSLQIIQTGGGSAAFTLANT GGVVDVGTYEYRLIADNNGGWALTPELIPDPPTPPDPPPPPEPPVPPTPPVPPPAPPAPP EPPTPPAPPTPAPPPAPRPTITPSTAAVLSMATVDPLIFQSELSSVRSRLDAVRSFSHDT NFWAHYTASRYNVSDSVGAAYDMHLNGVTLGADQSIDTDSSVTTRGAFFSYSHSDVDFDR GGDGNVDSYSVGAYISYLHQSGFYLDSVLKVNRFENEVNGRMTSGAPADGYYNTTGAGLN IQGGKYFYFGDTWIAPYTAVTGFTSDSSDYTLSNGMNADVGPQRSVIGEAGVSAGHKFNV QGVEVQPFVRAAVMQEFMDNNNVKVNNDEFTNDLSGTRGIYQAGVNARVAKSFTVQANAS YAEGHHVETPWTVNLGGSWSF Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:10:00 2011 Seq name: gi|283548477|gb|GG730300.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld1, whole genome shotgun sequence Length of sequence - 814885 bp Number of predicted genes - 729, with homology - 718 Number of transcription units - 403, operones - 161 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 3 - 113 91.0 # AE017194 [D:4654188..4655695] # 5S ribosomal RNA # Bacillus cereus ATCC 10987 # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. 1 1 Tu 1 . - CDS 44 - 235 58 ## COXBURSA331_A0274 hypothetical protein - Prom 345 - 404 79.3 + 5S_RRNA 180 - 241 93.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + TRNA 328 - 403 59.8 # Glu TTC 0 0 + 5S_RRNA 743 - 824 100.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. + TRNA 879 - 955 92.8 # Asp GTC 0 0 + TRNA 1008 - 1083 87.1 # Trp CCA 0 0 - Term 1079 - 1112 4.0 2 2 Tu 1 . - CDS 1183 - 2028 490 ## COG0583 Transcriptional regulator - Prom 2070 - 2129 2.7 + Prom 1981 - 2040 5.3 3 3 Tu 1 . + CDS 2135 - 2473 442 ## COG3085 Uncharacterized protein conserved in bacteria - Term 2391 - 2429 1.1 4 4 Tu 1 . - CDS 2499 - 4019 846 ## COG0606 Predicted ATPase with chaperone activity - Prom 4227 - 4286 6.9 + Prom 4515 - 4574 2.0 5 5 Op 1 7/0.092 + CDS 4607 - 6253 1369 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 6 5 Op 2 5/0.252 + CDS 6250 - 6513 227 ## COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit 7 5 Op 3 5/0.252 + CDS 6531 - 7460 1141 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 7469 - 7504 5.0 8 6 Op 1 8/0.049 + CDS 7521 - 9371 2317 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 9 6 Op 2 . + CDS 9377 - 10921 1641 ## COG1171 Threonine dehydratase + Term 10939 - 10974 5.1 - Term 10925 - 10960 5.1 10 7 Tu 1 . - CDS 10984 - 12177 1495 ## COG3007 Uncharacterized paraquat-inducible protein B - Prom 12284 - 12343 6.1 11 8 Tu 1 . - CDS 12352 - 13254 997 ## COG0583 Transcriptional regulator - Prom 13298 - 13357 3.8 + Prom 13289 - 13348 5.7 12 9 Tu 1 . + CDS 13413 - 14888 2155 ## COG0059 Ketol-acid reductoisomerase + Term 14975 - 15009 4.2 - Term 14963 - 14997 4.2 13 10 Tu 1 . - CDS 15004 - 15285 270 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 15343 - 15402 1.6 + Prom 15272 - 15331 3.7 14 11 Tu 1 . + CDS 15371 - 17392 2394 ## COG0210 Superfamily I DNA and RNA helicases - Term 17201 - 17228 -0.1 15 12 Tu 1 . - CDS 17440 - 18921 1449 ## COG0248 Exopolyphosphatase 16 13 Tu 1 . - CDS 19138 - 20406 1144 ## COG0513 Superfamily II DNA and RNA helicases - Prom 20543 - 20602 2.4 + Prom 20367 - 20426 4.6 17 14 Tu 1 . + CDS 20538 - 20867 439 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 20931 - 20964 -0.7 + Prom 20927 - 20986 2.3 18 15 Tu 1 . + CDS 21206 - 22465 1358 ## COG1158 Transcription termination factor + Term 22480 - 22522 8.5 + Prom 22619 - 22678 4.5 19 16 Op 1 5/0.252 + CDS 22704 - 23807 958 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 20 16 Op 2 4/0.362 + CDS 23820 - 24866 842 ## COG3765 Chain length determinant protein 21 17 Op 1 10/0.025 + CDS 24967 - 26052 762 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 22 17 Op 2 . + CDS 26049 - 27311 1078 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase 23 17 Op 3 4/0.362 + CDS 27308 - 27985 452 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 24 17 Op 4 6/0.135 + CDS 27990 - 29120 1263 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 25 17 Op 5 . + CDS 29122 - 30372 1068 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 26 17 Op 6 . + CDS 30369 - 31448 814 ## CKO_00134 4-alpha-L-fucosyltransferase 27 17 Op 7 . + CDS 31445 - 32800 1247 ## CKO_00135 putative common antigen polymerase 28 17 Op 8 4/0.362 + CDS 32800 - 33540 663 ## COG1922 Teichoic acid biosynthesis proteins + Term 33559 - 33596 4.9 + Prom 33567 - 33626 3.1 29 18 Tu 1 . + CDS 33817 - 35202 1327 ## COG1113 Gamma-aminobutyrate permease and related permeases + TRNA 35305 - 35381 91.0 # Arg CCG 0 0 + TRNA 35437 - 35512 84.9 # His GTG 0 0 + TRNA 35533 - 35619 69.1 # Leu CAG 0 0 + TRNA 35661 - 35737 92.7 # Pro TGG 0 0 - Term 36136 - 36176 2.6 30 19 Op 1 11/0.018 - CDS 36186 - 37385 1404 ## COG3071 Uncharacterized enzyme of heme biosynthesis 31 19 Op 2 10/0.025 - CDS 37388 - 38563 1218 ## COG2959 Uncharacterized enzyme of heme biosynthesis 32 19 Op 3 23/0.000 - CDS 38585 - 39325 621 ## COG1587 Uroporphyrinogen-III synthase 33 19 Op 4 . - CDS 39322 - 40263 1039 ## COG0181 Porphobilinogen deaminase - Prom 40404 - 40463 3.7 34 20 Tu 1 . - CDS 40498 - 40644 58 ## + Prom 40436 - 40495 5.2 35 21 Tu 1 . + CDS 40658 - 43204 2476 ## COG3072 Adenylate cyclase 36 22 Tu 1 . - CDS 43282 - 43602 574 ## COG1965 Protein implicated in iron transport, frataxin homolog - Prom 43625 - 43684 5.8 + Prom 43652 - 43711 3.1 37 23 Op 1 1/0.822 + CDS 43741 - 43944 152 ## COG5567 Predicted small periplasmic lipoprotein 38 23 Op 2 4/0.362 + CDS 43981 - 44805 899 ## COG0253 Diaminopimelate epimerase 39 23 Op 3 10/0.025 + CDS 44838 - 45509 754 ## COG3159 Uncharacterized protein conserved in bacteria 40 23 Op 4 8/0.049 + CDS 45506 - 46408 851 ## COG4973 Site-specific recombinase XerC 41 23 Op 5 5/0.252 + CDS 46408 - 47124 595 ## COG1011 Predicted hydrolase (HAD superfamily) + Prom 47126 - 47185 3.1 42 23 Op 6 1/0.822 + CDS 47213 - 49375 2541 ## COG0210 Superfamily I DNA and RNA helicases + Prom 49538 - 49597 3.4 43 24 Tu 1 . + CDS 49834 - 50784 1254 ## COG0598 Mg2+ and Co2+ transporters + Term 50840 - 50880 2.3 44 25 Op 1 1/0.822 - CDS 50874 - 51767 1060 ## COG2962 Predicted permeases 45 25 Op 2 . - CDS 51819 - 52286 467 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 52402 - 52461 5.5 + Prom 52366 - 52425 5.1 46 26 Tu 1 5/0.252 + CDS 52452 - 53321 898 ## COG2829 Outer membrane phospholipase A + Term 53361 - 53394 4.5 + Prom 53323 - 53382 2.3 47 27 Op 1 4/0.362 + CDS 53410 - 55239 1957 ## COG0514 Superfamily II DNA helicase 48 27 Op 2 . + CDS 55303 - 55923 764 ## COG1280 Putative threonine efflux protein 49 28 Tu 1 . - CDS 55969 - 56589 681 ## COG1280 Putative threonine efflux protein - Prom 56614 - 56673 5.4 + Prom 56600 - 56659 2.0 50 29 Op 1 5/0.252 + CDS 56700 - 57716 717 ## COG2267 Lysophospholipase 51 29 Op 2 3/0.491 + CDS 57732 - 58532 985 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 58534 - 58593 4.4 52 29 Op 3 . + CDS 58613 - 59512 989 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 59192 - 59221 -0.7 53 30 Tu 1 . - CDS 59400 - 60353 623 ## COG0583 Transcriptional regulator - Prom 60387 - 60446 4.7 + Prom 60393 - 60452 6.3 54 31 Tu 1 . + CDS 60589 - 62850 2646 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 62910 - 62951 3.2 - Term 62812 - 62844 -0.8 55 32 Tu 1 . - CDS 62947 - 63633 613 ## COG0412 Dienelactone hydrolase and related enzymes - Prom 63793 - 63852 3.6 + Prom 63713 - 63772 2.7 56 33 Tu 1 . + CDS 64019 - 64780 1014 ## COG2820 Uridine phosphorylase + Term 64794 - 64835 5.6 + Prom 64808 - 64867 7.5 57 34 Op 1 5/0.252 + CDS 64936 - 66351 1431 ## COG1322 Uncharacterized protein conserved in bacteria + Prom 66360 - 66419 2.0 58 34 Op 2 7/0.092 + CDS 66446 - 67201 364 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 59 34 Op 3 10/0.025 + CDS 67215 - 67820 654 ## COG3165 Uncharacterized protein conserved in bacteria 60 34 Op 4 6/0.135 + CDS 67898 - 69457 1276 ## COG0661 Predicted unusual protein kinase + Term 69478 - 69513 -0.8 61 34 Op 5 16/0.000 + CDS 69536 - 69790 440 ## COG1826 Sec-independent protein secretion pathway components 62 34 Op 6 28/0.000 + CDS 69794 - 70342 542 ## COG1826 Sec-independent protein secretion pathway components 63 34 Op 7 2/0.650 + CDS 70345 - 71136 741 ## COG0805 Sec-independent protein secretion pathway component TatC 64 34 Op 8 . + CDS 71166 - 71960 669 ## COG0084 Mg-dependent DNase 65 35 Tu 1 . - CDS 71967 - 72455 364 ## COG0250 Transcription antiterminator - Prom 72549 - 72608 3.9 + Prom 72406 - 72465 4.3 66 36 Op 1 6/0.135 + CDS 72622 - 74115 1450 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 67 36 Op 2 . + CDS 74156 - 74857 793 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases + Term 74991 - 75035 1.4 + Prom 74977 - 75036 3.2 68 37 Op 1 . + CDS 75086 - 76012 287 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 69 37 Op 2 . + CDS 76009 - 76989 803 ## COG1609 Transcriptional regulators - Term 76980 - 77012 2.1 70 38 Op 1 20/0.000 - CDS 77144 - 78307 1332 ## COG0183 Acetyl-CoA acetyltransferase 71 38 Op 2 . - CDS 78317 - 80506 2904 ## COG1250 3-hydroxyacyl-CoA dehydrogenase - Prom 80561 - 80620 7.2 + Prom 80606 - 80665 1.9 72 39 Op 1 2/0.650 + CDS 80694 - 82025 1612 ## COG0006 Xaa-Pro aminopeptidase 73 39 Op 2 4/0.362 + CDS 82025 - 82639 600 ## COG1739 Uncharacterized conserved protein 74 39 Op 3 6/0.135 + CDS 82678 - 84129 1666 ## COG0168 Trk-type K+ transport systems, membrane components 75 39 Op 4 . + CDS 84141 - 84686 478 ## COG4635 Flavodoxin + SSU_RRNA 85038 - 86301 97.0 # CP000857 [D:4074710..4076249] # 16S ribosomal RNA # Salmonella enterica subsp. enterica serovar Paratyphi C strain # RKS4594 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Paratyphi C. - Term 86768 - 86801 1.5 76 40 Tu 1 . - CDS 86876 - 87007 89 ## gi|237702461|ref|ZP_04532942.1| conserved hypothetical protein - Prom 87069 - 87128 2.1 + 5S_RRNA 87610 - 87738 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. - Term 87745 - 87776 4.1 77 41 Op 1 11/0.018 - CDS 87871 - 88389 407 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 78 41 Op 2 . - CDS 88371 - 88955 367 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - Prom 89082 - 89141 5.0 + Prom 88944 - 89003 1.7 79 42 Op 1 5/0.252 + CDS 89025 - 89294 336 ## COG3084 Uncharacterized protein conserved in bacteria + Term 89323 - 89365 2.2 80 42 Op 2 5/0.252 + CDS 89371 - 90357 860 ## COG2334 Putative homoserine kinase type II (protein kinase fold) 81 42 Op 3 . + CDS 90374 - 90997 707 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 90998 - 91041 8.6 82 43 Tu 1 . - CDS 91011 - 91919 677 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 92111 - 92170 7.5 + Prom 92070 - 92129 5.8 83 44 Tu 1 . + CDS 92310 - 95096 2984 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains + Term 95322 - 95359 9.4 - Term 95196 - 95230 2.0 84 45 Tu 1 . - CDS 95432 - 96028 691 ## COG0218 Predicted GTPase - Prom 96225 - 96284 5.0 + Prom 96547 - 96606 7.4 85 46 Op 1 . + CDS 96628 - 97143 579 ## COG3078 Uncharacterized protein conserved in bacteria + Term 97228 - 97275 5.1 + Prom 97171 - 97230 2.1 86 46 Op 2 . + CDS 97332 - 98705 1570 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Term 98823 - 98863 6.7 87 47 Tu 1 . - CDS 98795 - 98905 64 ## - Prom 98957 - 99016 3.3 - Term 98950 - 98985 0.2 88 48 Op 1 14/0.006 - CDS 99018 - 100427 1335 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 89 48 Op 2 5/0.252 - CDS 100439 - 101488 1229 ## COG3852 Signal transduction histidine kinase, nitrogen specific - Prom 101510 - 101569 6.3 - Term 101585 - 101636 -0.8 90 49 Tu 1 . - CDS 101761 - 103170 1836 ## COG0174 Glutamine synthetase - Prom 103245 - 103304 3.1 91 50 Tu 1 . - CDS 103377 - 103598 84 ## SSPA3579 cytoplasmic protein + Prom 103254 - 103313 5.2 92 51 Tu 1 . + CDS 103551 - 105374 2178 ## COG1217 Predicted membrane GTPase involved in stress response + Term 105396 - 105431 4.9 + Prom 105500 - 105559 5.5 93 52 Op 1 . + CDS 105586 - 106296 571 ## COG2188 Transcriptional regulators 94 52 Op 2 . + CDS 106305 - 107285 731 ## ECP_4084 xylose isomerase-like TIM barrel; region: AP_endonuc_2; pfam01261 95 52 Op 3 . + CDS 107328 - 108650 1147 ## COG0477 Permeases of the major facilitator superfamily + Term 108677 - 108714 5.8 - Term 108669 - 108699 4.3 96 53 Op 1 . - CDS 108710 - 109402 595 ## ECO103_4296 outer membrane porin L 97 53 Op 2 3/0.491 - CDS 109469 - 110890 1312 ## COG2211 Na+/melibiose symporter and related transporters 98 53 Op 3 3/0.491 - CDS 110937 - 112319 1560 ## COG2211 Na+/melibiose symporter and related transporters 99 53 Op 4 . - CDS 112365 - 114401 2235 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 100 53 Op 5 2/0.650 - CDS 114439 - 115281 472 ## COG2017 Galactose mutarotase and related enzymes 101 53 Op 6 3/0.491 - CDS 115300 - 116541 1557 ## COG2942 N-acyl-D-glucosamine 2-epimerase 102 53 Op 7 4/0.362 - CDS 116554 - 117429 1105 ## COG3684 Tagatose-1,6-bisphosphate aldolase 103 53 Op 8 . - CDS 117449 - 118339 850 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - Prom 118466 - 118525 3.6 + Prom 118422 - 118481 2.9 104 54 Op 1 3/0.491 + CDS 118506 - 119402 586 ## COG0524 Sugar kinases, ribokinase family 105 54 Op 2 1/0.822 + CDS 119436 - 120239 740 ## COG1349 Transcriptional regulators of sugar metabolism + Prom 120261 - 120320 2.4 106 55 Op 1 2/0.650 + CDS 120344 - 120943 657 ## COG1011 Predicted hydrolase (HAD superfamily) 107 55 Op 2 7/0.092 + CDS 120937 - 121809 690 ## COG1295 Predicted membrane protein 108 55 Op 3 5/0.252 + CDS 121806 - 122243 390 ## COG1490 D-Tyr-tRNAtyr deacylase 109 55 Op 4 . + CDS 122288 - 123229 898 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 123276 - 123316 6.7 110 56 Op 1 10/0.025 - CDS 123235 - 123522 137 ## COG3668 Plasmid stabilization system protein 111 56 Op 2 . - CDS 123515 - 123757 250 ## COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain 112 56 Op 3 . - CDS 123822 - 124730 804 ## COG0657 Esterase/lipase - Prom 124955 - 125014 5.2 + Prom 124837 - 124896 3.6 113 57 Op 1 . + CDS 124935 - 125177 248 ## SPAB_04994 hypothetical protein 114 57 Op 2 . + CDS 125177 - 125551 207 ## SPAB_04995 hypothetical protein + Term 125570 - 125596 0.1 - Term 125510 - 125566 0.6 115 58 Op 1 9/0.031 - CDS 125588 - 126517 1083 ## COG3058 Uncharacterized protein involved in formate dehydrogenase formation 116 58 Op 2 12/0.018 - CDS 126514 - 127149 520 ## COG2864 Cytochrome b subunit of formate dehydrogenase 117 58 Op 3 16/0.000 - CDS 127146 - 128048 896 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 118 58 Op 4 5/0.252 - CDS 128061 - 130475 2926 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 119 58 Op 5 . - CDS 130524 - 131111 375 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 131252 - 131311 3.4 + Prom 131067 - 131126 2.6 120 59 Tu 1 . + CDS 131366 - 132142 605 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity 121 60 Op 1 . - CDS 132109 - 132615 201 ## SO_1587 hypothetical protein 122 60 Op 2 . - CDS 132674 - 133195 534 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Prom 133216 - 133275 3.9 123 61 Tu 1 . + CDS 133325 - 133537 358 ## SARI_03617 hypothetical protein + Term 133553 - 133593 6.2 - Term 133549 - 133574 -0.5 124 62 Tu 1 . - CDS 133693 - 135528 216 ## COG5635 Predicted NTPase (NACHT family) - Prom 135672 - 135731 6.5 - Term 136104 - 136150 1.1 125 63 Op 1 . - CDS 136222 - 136545 489 ## KPN_04199 putative inner membrane protein 126 63 Op 2 . - CDS 136545 - 137204 721 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 137226 - 137285 4.7 + Prom 137189 - 137248 5.1 127 64 Tu 1 . + CDS 137306 - 137854 694 ## COG1396 Predicted transcriptional regulators 128 65 Op 1 2/0.650 - CDS 137912 - 138226 231 ## COG3254 Uncharacterized conserved protein 129 65 Op 2 5/0.252 - CDS 138223 - 139371 1568 ## COG1454 Alcohol dehydrogenase, class IV 130 66 Tu 1 5/0.252 - CDS 139499 - 140326 1133 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - Prom 140369 - 140428 2.3 131 67 Op 1 6/0.135 - CDS 140470 - 141729 1533 ## COG4806 L-rhamnose isomerase 132 67 Op 2 . - CDS 141726 - 143195 1487 ## COG1070 Sugar (pentulose and hexulose) kinases - Prom 143253 - 143312 2.4 + Prom 143411 - 143470 1.6 133 68 Tu 1 8/0.049 + CDS 143496 - 144344 740 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 144351 - 144410 4.0 134 69 Tu 1 . + CDS 144466 - 145314 540 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 145253 - 145298 6.4 135 70 Tu 1 . - CDS 145311 - 146345 1496 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Prom 146564 - 146623 6.1 + Prom 146526 - 146585 7.2 136 71 Tu 1 . + CDS 146635 - 147255 574 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 147274 - 147312 8.2 + Prom 147335 - 147394 6.5 137 72 Tu 1 . + CDS 147486 - 148475 1286 ## ECSE_4198 2-keto-3-deoxygluconate permease 138 73 Tu 1 . - CDS 148517 - 149413 994 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase - Prom 149537 - 149596 4.7 + Prom 149471 - 149530 4.3 139 74 Op 1 . + CDS 149566 - 150267 537 ## COG2258 Uncharacterized protein conserved in bacteria 140 74 Op 2 . + CDS 150267 - 150668 430 ## SPC_4164 hypothetical protein + Term 150746 - 150799 0.9 - Term 151144 - 151181 -0.0 141 75 Tu 1 . - CDS 151237 - 151461 97 ## - Prom 151561 - 151620 5.2 142 76 Tu 1 . - CDS 152169 - 152993 103 ## COG3209 Rhs family protein - Prom 153042 - 153101 11.6 143 77 Tu 1 . - CDS 153134 - 153469 194 ## EcolC_2198 hypothetical protein - Prom 153562 - 153621 2.9 - Term 153810 - 153839 -0.7 144 78 Tu 1 . - CDS 153952 - 154206 151 ## COG3209 Rhs family protein - Prom 154285 - 154344 6.0 145 79 Op 1 . - CDS 155138 - 155290 58 ## 146 79 Op 2 . - CDS 155303 - 155605 80 ## gi|283834681|ref|ZP_06354422.1| hypothetical protein CIT292_08898 147 79 Op 3 . - CDS 155703 - 155921 83 ## - Prom 155989 - 156048 2.5 - Term 156360 - 156401 -0.9 148 80 Tu 1 . - CDS 156642 - 160739 2883 ## COG3209 Rhs family protein - Prom 160830 - 160889 2.6 149 81 Op 1 40/0.000 - CDS 160938 - 162311 1360 ## COG0642 Signal transduction histidine kinase 150 81 Op 2 . - CDS 162308 - 163006 853 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 163004 - 163063 2.6 151 82 Tu 1 . + CDS 163157 - 163657 329 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein + Term 163697 - 163727 4.3 + Prom 163726 - 163785 6.0 152 83 Tu 1 . + CDS 163805 - 164707 620 ## COG0053 Predicted Co/Zn/Cd cation transporters + Term 164759 - 164806 1.3 + Prom 164753 - 164812 4.4 153 84 Tu 1 . + CDS 164893 - 165855 1193 ## COG0205 6-phosphofructokinase + Prom 165939 - 165998 6.2 154 85 Tu 1 . + CDS 166056 - 167045 1228 ## COG1613 ABC-type sulfate transport system, periplasmic component + Term 167064 - 167102 2.9 + Prom 167067 - 167126 4.8 155 86 Tu 1 . + CDS 167150 - 167911 713 ## COG2134 CDP-diacylglycerol pyrophosphatase 156 87 Op 1 . + CDS 168339 - 169367 440 ## ROD_38311 hypothetical protein 157 87 Op 2 . + CDS 169369 - 171606 1069 ## COG2849 Uncharacterized protein conserved in bacteria + Prom 171613 - 171672 3.0 158 87 Op 3 . + CDS 171693 - 172997 1461 ## COG0471 Di- and tricarboxylate transporters + Prom 172999 - 173058 6.2 159 88 Tu 1 . + CDS 173110 - 174582 1455 ## COG0471 Di- and tricarboxylate transporters + Term 174770 - 174803 -1.0 - Term 174587 - 174615 3.7 160 89 Tu 1 . - CDS 174626 - 175393 804 ## COG0149 Triosephosphate isomerase - Term 175419 - 175449 2.1 161 90 Tu 1 . - CDS 175505 - 176101 712 ## SC3971 hypothetical protein - Prom 176125 - 176184 4.8 + Prom 176068 - 176127 5.3 162 91 Tu 1 . + CDS 176202 - 176630 495 ## COG3152 Predicted membrane protein + Term 176704 - 176740 -0.3 163 92 Op 1 4/0.362 - CDS 176664 - 177410 889 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Term 177452 - 177485 5.4 164 92 Op 2 4/0.362 - CDS 177506 - 178516 1363 ## COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins - Prom 178541 - 178600 3.9 - Term 178599 - 178640 1.6 165 93 Op 1 18/0.000 - CDS 178677 - 180185 2009 ## COG0554 Glycerol kinase 166 93 Op 2 . - CDS 180207 - 181052 716 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 181161 - 181220 5.6 + Prom 181206 - 181265 3.8 167 94 Tu 1 . + CDS 181487 - 181726 537 ## COG3074 Uncharacterized protein conserved in bacteria + Term 181823 - 181851 1.0 - Term 181803 - 181846 6.4 168 95 Op 1 7/0.092 - CDS 181847 - 182332 572 ## COG0684 Demethylmenaquinone methyltransferase - Prom 182358 - 182417 5.5 169 95 Op 2 6/0.135 - CDS 182425 - 183354 1183 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Term 183359 - 183393 3.6 170 96 Op 1 24/0.000 - CDS 183422 - 184753 1208 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 171 96 Op 2 7/0.092 - CDS 184763 - 185212 626 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit - Prom 185312 - 185371 2.5 - Term 185315 - 185348 7.2 172 97 Op 1 . - CDS 185385 - 186254 664 ## COG3087 Cell division protein - Prom 186389 - 186448 1.7 173 97 Op 2 . - CDS 186453 - 187478 906 ## COG1609 Transcriptional regulators - Prom 187568 - 187627 4.0 174 98 Tu 1 . - CDS 187634 - 189832 1898 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - Prom 189955 - 190014 3.6 + Prom 189838 - 189897 6.6 175 99 Tu 1 . + CDS 190090 - 190302 378 ## PROTEIN SUPPORTED gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31 + Term 190316 - 190355 7.7 + Prom 190370 - 190429 8.4 176 100 Op 1 . + CDS 190641 - 191321 742 ## SARI_03559 hypothetical protein 177 100 Op 2 . + CDS 191411 - 192835 1308 ## COG2211 Na+/melibiose symporter and related transporters + Term 192841 - 192888 9.4 - Term 192836 - 192866 3.0 178 101 Tu 1 . - CDS 192889 - 193206 391 ## COG3060 Transcriptional regulator of met regulon - Prom 193332 - 193391 6.7 179 102 Op 1 5/0.252 + CDS 193472 - 194632 1139 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 180 102 Op 2 . + CDS 194635 - 197067 2778 ## COG0527 Aspartokinases 181 103 Tu 1 . - CDS 197115 - 198278 395 ## APECO1_2527 putative cytoplasmic protein - Prom 198362 - 198421 2.5 + Prom 198326 - 198385 1.5 182 104 Tu 1 . + CDS 198412 - 199968 1643 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 200003 - 200043 2.1 + Prom 200038 - 200097 2.2 183 105 Tu 1 . + CDS 200163 - 201050 1027 ## COG0685 5,10-methylenetetrahydrofolate reductase + Term 201063 - 201091 1.0 + Prom 201063 - 201122 5.0 184 106 Tu 1 . + CDS 201219 - 203399 2330 ## COG0376 Catalase (peroxidase I) + Term 203406 - 203450 0.2 - Term 203394 - 203433 8.1 185 107 Op 1 3/0.491 - CDS 203503 - 204606 1378 ## COG0371 Glycerol dehydrogenase and related enzymes 186 107 Op 2 . - CDS 204619 - 205281 807 ## COG0176 Transaldolase 187 108 Tu 1 . - CDS 205527 - 206387 584 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 206452 - 206511 3.4 - Term 206423 - 206471 -0.5 188 109 Tu 1 . - CDS 206539 - 208272 1716 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase - Prom 208377 - 208436 3.4 189 110 Tu 1 . - CDS 208482 - 211094 2806 ## COG2352 Phosphoenolpyruvate carboxylase - Prom 211125 - 211184 3.5 - Term 211283 - 211317 1.3 190 111 Tu 1 . - CDS 211446 - 212636 937 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 212827 - 212886 5.1 + Prom 212580 - 212639 6.4 191 112 Op 1 8/0.049 + CDS 212753 - 213757 1054 ## COG0002 Acetylglutamate semialdehyde dehydrogenase 192 112 Op 2 2/0.650 + CDS 213768 - 214541 1131 ## COG0548 Acetylglutamate kinase + Prom 214560 - 214619 4.3 193 113 Tu 1 4/0.362 + CDS 214658 - 216034 1759 ## COG0165 Argininosuccinate lyase + Term 216118 - 216156 -0.3 + Prom 216276 - 216335 4.3 194 114 Tu 1 . + CDS 216369 - 217286 1005 ## COG0583 Transcriptional regulator + Term 217338 - 217388 -0.3 195 115 Tu 1 . - CDS 217269 - 218669 445 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 218701 - 218760 3.4 + Prom 218639 - 218698 3.4 196 116 Op 1 . + CDS 218840 - 219496 635 ## COG1309 Transcriptional regulator 197 116 Op 2 . + CDS 219512 - 219871 436 ## SG3288 hypothetical protein + Term 219918 - 219963 1.1 198 117 Tu 1 . - CDS 219954 - 221054 1270 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - Prom 221079 - 221138 5.7 199 118 Op 1 2/0.650 + CDS 221422 - 223260 1830 ## COG4206 Outer membrane cobalamin receptor protein 200 118 Op 2 . + CDS 223205 - 224056 695 ## COG0796 Glutamate racemase + 5S_RRNA 224623 - 224674 98.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + 5S_RRNA 224734 - 224795 93.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + TRNA 224868 - 224944 88.4 # Ile GAT 0 0 + TRNA 225050 - 225125 88.8 # Ala TGC 0 0 201 119 Tu 1 . - CDS 226151 - 226360 66 ## - Prom 226391 - 226450 1.6 + 5S_RRNA 226315 - 226439 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. + Prom 226641 - 226700 4.1 202 120 Tu 1 . + CDS 226837 - 228546 607 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 228645 - 228671 1.0 203 121 Tu 1 . - CDS 228498 - 228701 96 ## - Prom 228724 - 228783 3.4 + Prom 229195 - 229254 4.1 204 122 Op 1 . + CDS 229348 - 230403 -8 ## COG0270 Site-specific DNA methylase 205 122 Op 2 . + CDS 230462 - 232801 461 ## ECP_4571 G-X-G motif; other site 206 122 Op 3 . + CDS 232743 - 233429 173 ## ABBFA_000086 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein + Term 233660 - 233688 -0.0 + Prom 234764 - 234823 3.6 207 123 Tu 1 . + CDS 234949 - 235143 121 ## gi|291085948|ref|ZP_06354479.2| conserved hypothetical protein + Term 235150 - 235188 4.1 208 124 Tu 1 . + CDS 235339 - 235542 196 ## KPN_04117 hypothetical protein 209 125 Op 1 . + CDS 236364 - 237248 680 ## COG0582 Integrase 210 125 Op 2 . + CDS 237190 - 237384 57 ## 211 125 Op 3 . + CDS 237389 - 238090 438 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 238117 - 238179 -0.3 212 126 Tu 1 . - CDS 238159 - 238503 172 ## gi|283834744|ref|ZP_06354485.1| transcriptional regulator, LuxR family - Prom 238605 - 238664 3.4 213 127 Tu 1 . - CDS 239359 - 240594 801 ## COG2814 Arabinose efflux permease - Prom 240779 - 240838 4.0 - Term 240861 - 240911 4.3 214 128 Tu 1 . - CDS 240970 - 242382 950 ## COG0477 Permeases of the major facilitator superfamily - Prom 242484 - 242543 1.9 + Prom 242371 - 242430 2.9 215 129 Tu 1 . + CDS 242491 - 243357 501 ## COG1396 Predicted transcriptional regulators + Term 243497 - 243538 2.6 - Term 243988 - 244022 0.1 216 130 Tu 1 . - CDS 244055 - 245317 403 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Prom 245558 - 245617 3.3 - TRNA 245479 - 245554 84.1 # Phe GAA 0 0 217 131 Op 1 . - CDS 245663 - 247681 879 ## ROD_31971 hypothetical protein 218 131 Op 2 3/0.491 - CDS 247749 - 248324 674 ## COG1309 Transcriptional regulator 219 131 Op 3 7/0.092 - CDS 248361 - 250070 1472 ## COG4232 Thiol:disulfide interchange protein 220 131 Op 4 5/0.252 - CDS 250046 - 250393 273 ## COG1324 Uncharacterized protein involved in tolerance to divalent cations - Term 250477 - 250514 9.4 221 132 Tu 1 . - CDS 250522 - 251823 1285 ## COG2704 Anaerobic C4-dicarboxylate transporter - Prom 251846 - 251905 4.4 - Term 251880 - 251917 7.1 222 133 Tu 1 . - CDS 251938 - 253374 1417 ## COG1027 Aspartate ammonia-lyase - Prom 253530 - 253589 8.1 + Prom 253505 - 253564 4.1 223 134 Tu 1 . + CDS 253712 - 254188 310 ## COG3030 Protein affecting phage T7 exclusion by the F plasmid 224 135 Tu 1 . - CDS 254238 - 255503 1103 ## COG0531 Amino acid transporters - Prom 255568 - 255627 2.5 + Prom 255599 - 255658 6.4 225 136 Op 1 41/0.000 + CDS 255779 - 256072 405 ## COG0234 Co-chaperonin GroES (HSP10) 226 136 Op 2 . + CDS 256116 - 257762 2374 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 257764 - 257790 -1.0 227 137 Tu 1 . + CDS 258850 - 260547 1083 ## COG3344 Retron-type reverse transcriptase + Term 260599 - 260647 11.6 + Prom 260796 - 260855 3.6 228 138 Tu 1 . + CDS 260890 - 261243 322 ## SG4174 hypothetical protein - Term 261202 - 261237 -0.7 229 139 Tu 1 . - CDS 261331 - 262194 761 ## CKO_03689 hypothetical protein - Prom 262225 - 262284 8.3 230 140 Op 1 . - CDS 262417 - 264135 771 ## PFL_1098 hypothetical protein 231 140 Op 2 . - CDS 264159 - 265187 775 ## COG1509 Lysine 2,3-aminomutase - Prom 265232 - 265291 3.2 + Prom 265126 - 265185 3.7 232 141 Tu 1 . + CDS 265229 - 265795 603 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 265812 - 265847 6.7 + Prom 265996 - 266055 4.1 233 142 Tu 1 . + CDS 266094 - 266240 90 ## COG5510 Predicted small secreted protein + Term 266244 - 266286 8.1 - Term 266236 - 266270 6.8 234 143 Tu 1 . - CDS 266271 - 266645 245 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 266665 - 266724 2.4 + Prom 266993 - 267052 6.3 235 144 Tu 1 . + CDS 267127 - 267444 493 ## COG2076 Membrane transporters of cations and cationic drugs 236 145 Op 1 3/0.491 - CDS 267441 - 267974 603 ## COG3040 Bacterial lipocalin - Prom 267995 - 268054 3.8 - Term 268023 - 268062 7.3 237 145 Op 2 . - CDS 268068 - 269213 1136 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 269298 - 269357 2.2 + Prom 269256 - 269315 4.3 238 146 Tu 1 . + CDS 269345 - 270220 606 ## COG0583 Transcriptional regulator - Term 270210 - 270242 6.1 239 147 Op 1 10/0.025 - CDS 270262 - 270618 466 ## COG3080 Fumarate reductase subunit D 240 147 Op 2 10/0.025 - CDS 270629 - 271024 464 ## COG3029 Fumarate reductase subunit C 241 147 Op 3 36/0.000 - CDS 271035 - 271769 940 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 242 147 Op 4 . - CDS 271762 - 273552 1865 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit + Prom 273680 - 273739 6.8 243 148 Tu 1 . + CDS 273877 - 274854 1062 ## COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) + Term 274870 - 274914 9.0 + Prom 274883 - 274942 4.4 244 149 Tu 1 . + CDS 275067 - 276569 1327 ## COG0531 Amino acid transporters 245 150 Op 1 5/0.252 - CDS 276663 - 279977 3527 ## COG3264 Small-conductance mechanosensitive channel 246 150 Op 2 2/0.650 - CDS 279995 - 280963 968 ## COG0688 Phosphatidylserine decarboxylase - Term 280971 - 281022 2.0 247 150 Op 3 . - CDS 281056 - 282132 1018 ## COG1162 Predicted GTPases - Prom 282154 - 282213 3.6 + Prom 282101 - 282160 3.4 248 151 Tu 1 . + CDS 282214 - 282759 755 ## COG1949 Oligoribonuclease (3'->5' exoribonuclease) + TRNA 283001 - 283076 93.7 # Gly GCC 0 0 + TRNA 283233 - 283308 93.7 # Gly GCC 0 0 + TRNA 283465 - 283540 93.7 # Gly GCC 0 0 - Term 283550 - 283589 -0.4 249 152 Tu 1 . - CDS 283810 - 284949 980 ## COG1600 Uncharacterized Fe-S protein - Prom 284974 - 285033 5.2 250 153 Op 1 6/0.135 + CDS 284963 - 286495 1066 ## PROTEIN SUPPORTED gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 251 153 Op 2 13/0.012 + CDS 286467 - 286928 371 ## COG0802 Predicted ATPase or kinase 252 153 Op 3 10/0.025 + CDS 286945 - 288276 1113 ## COG0860 N-acetylmuramoyl-L-alanine amidase 253 153 Op 4 12/0.018 + CDS 288286 - 290139 1757 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 254 153 Op 5 15/0.000 + CDS 290177 - 291082 345 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 255 153 Op 6 16/0.000 + CDS 291167 - 291475 315 ## COG1923 Uncharacterized host factor I protein + Term 291497 - 291536 5.5 256 153 Op 7 8/0.049 + CDS 291550 - 292830 714 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 257 154 Op 1 21/0.000 + CDS 292951 - 294204 1304 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 258 154 Op 2 11/0.018 + CDS 294207 - 295211 1404 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs + Term 295236 - 295285 12.3 259 155 Tu 1 6/0.135 + CDS 295294 - 295491 242 ## COG3242 Uncharacterized protein conserved in bacteria + Prom 295511 - 295570 4.0 260 156 Tu 1 . + CDS 295594 - 296892 1513 ## COG0104 Adenylosuccinate synthase + Term 296900 - 296943 5.1 + Prom 296928 - 296987 4.2 261 157 Op 1 2/0.650 + CDS 297109 - 297534 231 ## COG1959 Predicted transcriptional regulator 262 157 Op 2 7/0.092 + CDS 297573 - 300035 1255 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 263 157 Op 3 4/0.362 + CDS 300108 - 300839 449 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 + Term 300852 - 300892 2.5 + Prom 300876 - 300935 13.2 264 158 Op 1 6/0.135 + CDS 301059 - 301367 284 ## COG3789 Uncharacterized protein conserved in bacteria 265 158 Op 2 1/0.822 + CDS 301383 - 302081 756 ## COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription 266 158 Op 3 . + CDS 302081 - 303148 622 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 267 158 Op 4 . + CDS 303148 - 303807 576 ## STM4373 cytoplasmic protein 268 158 Op 5 5/0.252 + CDS 303825 - 304223 360 ## COG3766 Predicted membrane protein 269 158 Op 6 5/0.252 + CDS 304233 - 304874 286 ## COG5463 Predicted integral membrane protein 270 158 Op 7 1/0.822 + CDS 304877 - 306043 1083 ## COG0754 Glutathionylspermidine synthase + Prom 306045 - 306104 2.2 271 158 Op 8 . + CDS 306128 - 307750 1363 ## COG1960 Acyl-CoA dehydrogenases 272 159 Tu 1 . - CDS 307835 - 308122 305 ## ROD_32421 hypothetical protein - Prom 308186 - 308245 2.8 273 160 Tu 1 . - CDS 308258 - 308560 253 ## APECO1_2203 putative biofilm stress and motility protein A - Prom 308581 - 308640 3.3 + Prom 308553 - 308612 3.2 274 161 Tu 1 . + CDS 308769 - 309518 492 ## COG1073 Hydrolases of the alpha/beta superfamily + Term 309555 - 309587 -0.3 - Term 309465 - 309512 0.5 275 162 Tu 1 . - CDS 309515 - 310270 873 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 310300 - 310359 2.8 - Term 310335 - 310365 3.0 276 163 Tu 1 . - CDS 310377 - 311441 1105 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 311643 - 311702 4.9 + Prom 311589 - 311648 9.4 277 164 Op 1 11/0.018 + CDS 311808 - 313205 1576 ## COG3037 Uncharacterized protein conserved in bacteria 278 164 Op 2 13/0.012 + CDS 313221 - 313526 395 ## COG3414 Phosphotransferase system, galactitol-specific IIB component 279 164 Op 3 8/0.049 + CDS 313538 - 314005 733 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 280 164 Op 4 9/0.031 + CDS 314018 - 314668 801 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 281 164 Op 5 8/0.049 + CDS 314678 - 315532 891 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 282 164 Op 6 . + CDS 315532 - 316218 846 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 316226 - 316286 1.2 - Term 316392 - 316422 3.0 283 165 Tu 1 . - CDS 316466 - 316741 162 ## ECO111_5015 hypothetical protein + Prom 316942 - 317001 4.1 284 166 Tu 1 . + CDS 317040 - 317804 832 ## COG0730 Predicted permeases + Prom 317812 - 317871 5.5 285 167 Op 1 10/0.025 + CDS 317964 - 318359 671 ## PROTEIN SUPPORTED gi|157147829|ref|YP_001455147.1| 30S ribosomal protein S6 286 167 Op 2 10/0.025 + CDS 318366 - 318680 91 ## COG2965 Primosomal replication protein N 287 167 Op 3 27/0.000 + CDS 318685 - 318912 385 ## PROTEIN SUPPORTED gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18 288 167 Op 4 1/0.822 + CDS 318954 - 319403 721 ## PROTEIN SUPPORTED gi|227331258|ref|ZP_03834914.1| hypothetical protein CIT292_00613 + Term 319424 - 319467 8.1 + Prom 319456 - 319515 5.2 289 168 Tu 1 . + CDS 319545 - 320468 1091 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 320444 - 320477 5.4 290 169 Tu 1 . - CDS 320521 - 321171 575 ## COG3061 Cell envelope opacity-associated protein A - Prom 321234 - 321293 4.0 + Prom 321304 - 321363 4.5 291 170 Tu 1 . + CDS 321391 - 322011 852 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Prom 322072 - 322131 4.9 292 171 Tu 1 . + CDS 322320 - 323729 1866 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 323785 - 323824 5.2 293 172 Tu 1 . - CDS 323817 - 324479 897 ## COG2846 Regulator of cell morphogenesis and NO signaling - Prom 324700 - 324759 6.1 + Prom 324541 - 324600 4.7 294 173 Tu 1 . + CDS 324724 - 326295 1706 ## COG0840 Methyl-accepting chemotaxis protein + Term 326341 - 326386 4.2 295 174 Op 1 3/0.491 - CDS 326333 - 327301 1061 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 296 174 Op 2 1/0.822 - CDS 327378 - 328202 781 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 328223 - 328282 1.6 297 174 Op 3 . - CDS 328284 - 329132 1198 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 329207 - 329266 2.8 + Prom 329132 - 329191 4.0 298 175 Tu 1 . + CDS 329223 - 329597 405 ## COG1733 Predicted transcriptional regulators + Term 329637 - 329682 -0.8 299 176 Tu 1 . - CDS 329671 - 331614 2387 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 331690 - 331749 4.5 + Prom 331586 - 331645 4.6 300 177 Tu 1 . + CDS 331803 - 332543 879 ## COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase + Term 332544 - 332596 1.6 - Term 332536 - 332576 -0.4 301 178 Tu 1 . - CDS 332591 - 333460 161 ## COG0535 Predicted Fe-S oxidoreductases 302 179 Tu 1 . - CDS 333650 - 334546 269 ## gi|283834837|ref|ZP_06354578.1| keratin-associated protein 17-1 303 180 Tu 1 . - CDS 334664 - 335221 759 ## COG3054 Predicted transcriptional regulator - Prom 335398 - 335457 3.5 + Prom 335362 - 335421 5.9 304 181 Tu 1 . + CDS 335549 - 335755 289 ## Z5828 hypothetical protein + Term 335785 - 335816 2.4 - Term 335773 - 335804 2.4 305 182 Tu 1 . - CDS 335824 - 337164 1547 ## COG1253 Hemolysins and related proteins containing CBS domains - Term 337227 - 337260 2.0 306 183 Tu 1 . - CDS 337316 - 337954 531 ## COG0225 Peptide methionine sulfoxide reductase - Prom 338048 - 338107 3.4 + Prom 338076 - 338135 5.2 307 184 Op 1 16/0.000 + CDS 338167 - 339900 1945 ## COG0729 Outer membrane protein 308 184 Op 2 6/0.135 + CDS 339897 - 343673 4393 ## COG2911 Uncharacterized protein conserved in bacteria 309 184 Op 3 . + CDS 343676 - 344020 306 ## COG2105 Uncharacterized conserved protein + Term 344027 - 344061 5.5 + Prom 344132 - 344191 8.7 310 185 Op 1 . + CDS 344278 - 345405 336 ## COG3157 Hemolysin-coregulated protein (uncharacterized) 311 185 Op 2 . + CDS 345417 - 345620 104 ## CKO_03605 hypothetical protein + Term 345635 - 345668 -0.4 - Term 345623 - 345656 0.4 312 186 Tu 1 . - CDS 345694 - 346221 747 ## COG0221 Inorganic pyrophosphatase - Prom 346401 - 346460 5.0 + Prom 346371 - 346430 4.8 313 187 Op 1 16/0.000 + CDS 346531 - 347487 1118 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 347510 - 347551 4.1 314 187 Op 2 21/0.000 + CDS 347609 - 349111 174 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 315 187 Op 3 11/0.018 + CDS 349125 - 350147 1203 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 316 187 Op 4 . + CDS 350134 - 351135 1305 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 317 188 Tu 1 . + CDS 351239 - 352351 1226 ## COG0840 Methyl-accepting chemotaxis protein + Term 352420 - 352473 9.1 318 189 Tu 1 . - CDS 352463 - 353461 1177 ## COG0158 Fructose-1,6-bisphosphatase - Prom 353498 - 353557 2.4 + Prom 353554 - 353613 4.8 319 190 Tu 1 . + CDS 353637 - 355013 1748 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 355036 - 355083 3.2 - Term 355008 - 355045 -1.0 320 191 Tu 1 . - CDS 355113 - 355664 732 ## COG3028 Uncharacterized protein conserved in bacteria - Prom 355684 - 355743 7.1 + Prom 355655 - 355714 3.0 321 192 Op 1 2/0.650 + CDS 355760 - 357112 1574 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs + Term 357116 - 357153 -1.0 + Prom 357120 - 357179 3.0 322 192 Op 2 . + CDS 357199 - 357585 619 ## COG3783 Soluble cytochrome b562 + Prom 357650 - 357709 1.9 323 193 Op 1 . + CDS 357931 - 358239 419 ## ROD_32981 hypothetical protein 324 193 Op 2 . + CDS 358250 - 358612 614 ## ECL_00643 hypothetical protein 325 193 Op 3 . + CDS 358615 - 358914 215 ## ROD_33001 hypothetical protein 326 193 Op 4 . + CDS 358937 - 359713 852 ## ROD_33011 hypothetical protein 327 193 Op 5 . + CDS 359725 - 360369 1053 ## CKO_03587 hypothetical protein 328 193 Op 6 1/0.822 + CDS 360438 - 361571 1091 ## COG3964 Predicted amidohydrolase 329 193 Op 7 . + CDS 361555 - 362673 1108 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 330 193 Op 8 . + CDS 362670 - 363410 828 ## CKO_03584 hypothetical protein 331 193 Op 9 1/0.822 + CDS 363432 - 365345 1908 ## COG3711 Transcriptional antiterminator + Term 365374 - 365417 2.6 332 194 Op 1 2/0.650 + CDS 365423 - 365665 218 ## COG3077 DNA-damage-inducible protein J 333 194 Op 2 . + CDS 365655 - 365939 288 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system - Term 365892 - 365938 -0.4 334 195 Tu 1 . - CDS 365943 - 366407 492 ## COG0602 Organic radical activating enzymes - Prom 366427 - 366486 3.1 335 196 Tu 1 . - CDS 366528 - 368666 2580 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 368846 - 368905 6.0 - Term 369021 - 369058 7.5 336 197 Op 1 9/0.031 - CDS 369076 - 370728 1775 ## COG0366 Glycosidases 337 197 Op 2 7/0.092 - CDS 370778 - 372196 1796 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 372216 - 372275 3.8 338 198 Tu 1 . - CDS 372353 - 373300 1028 ## COG1609 Transcriptional regulators - Prom 373338 - 373397 3.5 + Prom 373404 - 373463 5.7 339 199 Tu 1 . + CDS 373688 - 376396 3265 ## COG0474 Cation transport ATPase + Term 376411 - 376453 5.2 + Prom 376470 - 376529 7.9 340 200 Op 1 11/0.018 + CDS 376775 - 377752 534 ## PROTEIN SUPPORTED gi|90020579|ref|YP_526406.1| ribosomal protein L22 + Term 377757 - 377799 8.0 341 200 Op 2 11/0.018 + CDS 377815 - 378324 411 ## COG3090 TRAP-type C4-dicarboxylate transport system, small permease component 342 200 Op 3 . + CDS 378356 - 379642 947 ## PROTEIN SUPPORTED gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 - Term 379634 - 379674 3.0 343 201 Op 1 6/0.135 - CDS 379733 - 380119 460 ## COG0251 Putative translation initiation inhibitor, yjgF family 344 201 Op 2 19/0.000 - CDS 380196 - 380657 603 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 345 201 Op 3 . - CDS 380671 - 381606 1155 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 381763 - 381822 7.8 - Term 381624 - 381657 4.5 346 202 Tu 1 . - CDS 381843 - 382322 337 ## COG1438 Arginine repressor - Term 382428 - 382458 5.0 347 203 Op 1 3/0.491 - CDS 382467 - 383870 1189 ## COG1288 Predicted membrane protein 348 203 Op 2 8/0.049 - CDS 383926 - 384930 1106 ## COG0078 Ornithine carbamoyltransferase 349 203 Op 3 2/0.650 - CDS 384986 - 385918 1022 ## COG0549 Carbamate kinase 350 203 Op 4 . - CDS 385928 - 387148 619 ## PROTEIN SUPPORTED gi|148988789|ref|ZP_01820204.1| 50S ribosomal protein L33 - Prom 387328 - 387387 12.1 + Prom 387654 - 387713 4.6 351 204 Tu 1 . + CDS 387820 - 388272 628 ## COG2731 Beta-galactosidase, beta subunit 352 205 Tu 1 . - CDS 388453 - 389457 1015 ## COG0078 Ornithine carbamoyltransferase - Prom 389493 - 389552 7.8 + Prom 389445 - 389504 4.1 353 206 Op 1 1/0.822 + CDS 389621 - 390046 699 ## COG3076 Uncharacterized protein conserved in bacteria 354 206 Op 2 . + CDS 390098 - 390856 848 ## COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA + Prom 390908 - 390967 3.0 355 207 Tu 1 . + CDS 391023 - 391853 892 ## Entcl_3894 hypothetical protein + Term 391863 - 391900 4.2 356 208 Tu 1 . - CDS 391879 - 392382 562 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 392482 - 392541 10.8 + Prom 392496 - 392555 12.4 357 209 Tu 1 . + CDS 392577 - 393767 914 ## COG4269 Predicted membrane protein + Term 393776 - 393808 5.0 - Term 393761 - 393799 8.5 358 210 Op 1 5/0.252 - CDS 393895 - 396750 3720 ## COG0525 Valyl-tRNA synthetase 359 210 Op 2 12/0.018 - CDS 396750 - 397193 365 ## COG2927 DNA polymerase III, chi subunit - Prom 397263 - 397322 5.2 - Term 397210 - 397246 7.1 360 211 Tu 1 . - CDS 397338 - 398849 1724 ## COG0260 Leucyl aminopeptidase - Prom 398940 - 398999 3.0 + Prom 398961 - 399020 4.3 361 212 Op 1 22/0.000 + CDS 399117 - 400217 1043 ## COG0795 Predicted permeases 362 212 Op 2 . + CDS 400217 - 401299 1667 ## COG0795 Predicted permeases - Term 401506 - 401549 4.4 363 213 Op 1 1/0.822 - CDS 401555 - 403057 1786 ## COG0433 Predicted ATPase 364 213 Op 2 2/0.650 - CDS 403137 - 404114 1073 ## COG1609 Transcriptional regulators 365 213 Op 3 5/0.252 - CDS 404188 - 405507 1659 ## COG2610 H+/gluconate symporter and related permeases - Term 405579 - 405609 3.0 366 214 Op 1 10/0.025 - CDS 405631 - 406395 187 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 367 214 Op 2 . - CDS 406407 - 407450 1065 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 407543 - 407602 4.0 + Prom 407459 - 407518 5.6 368 215 Tu 1 . + CDS 407668 - 408189 450 ## COG3265 Gluconate kinase + Term 408315 - 408358 -0.3 369 216 Op 1 . - CDS 408220 - 409239 1244 ## COG1064 Zn-dependent alcohol dehydrogenases 370 216 Op 2 . - CDS 409314 - 409895 414 ## COG0500 SAM-dependent methyltransferases 371 216 Op 3 . - CDS 409895 - 410908 369 ## Pvag_3748 hypothetical protein + TRNA 411198 - 411282 76.0 # Leu CAA 0 0 372 217 Op 1 . - CDS 411432 - 412358 792 ## COG0582 Integrase 373 217 Op 2 . - CDS 412348 - 413967 872 ## EC55989_4900 hypothetical protein - Prom 414027 - 414086 2.9 - Term 414099 - 414133 5.1 374 218 Op 1 . - CDS 414146 - 415057 611 ## COG4227 Antirestriction protein 375 218 Op 2 . - CDS 415143 - 415436 256 ## EC55989_4902 hypothetical protein - Prom 415615 - 415674 2.4 + Prom 416250 - 416309 7.3 376 219 Tu 1 . + CDS 416370 - 417011 -111 ## COG0270 Site-specific DNA methylase 377 220 Tu 1 . + CDS 417815 - 419959 103 ## ETA_09670 histidine kinase-like protein 378 221 Tu 1 . + CDS 420555 - 421712 -56 ## ETA_09690 hypothetical protein + Term 421724 - 421770 9.6 379 222 Tu 1 . - CDS 421772 - 422530 -288 ## Tcr_1644 hypothetical protein - Prom 422568 - 422627 5.3 380 223 Op 1 . - CDS 422702 - 424183 1196 ## SARI_03145 hypothetical protein 381 223 Op 2 . - CDS 424180 - 424437 217 ## CKO_03490 hypothetical protein 382 223 Op 3 . - CDS 424434 - 425801 1269 ## SARI_03143 hypothetical protein 383 223 Op 4 . - CDS 425804 - 426739 521 ## KP1_0595 hypothetical protein 384 224 Tu 1 . + CDS 426709 - 426918 96 ## gi|331660870|ref|ZP_08361802.1| hypothetical protein ECKG_03370 - Term 426816 - 426850 5.0 385 225 Op 1 . - CDS 426858 - 428234 1541 ## SARI_03141 hypothetical protein 386 225 Op 2 . - CDS 428250 - 429257 942 ## SARI_03140 hypothetical protein - Term 429264 - 429304 6.3 387 225 Op 3 . - CDS 429322 - 432471 3177 ## SARI_03139 hypothetical protein - Prom 432533 - 432592 3.8 + Prom 432586 - 432645 4.7 388 226 Op 1 1/0.822 + CDS 432746 - 433990 1176 ## COG0477 Permeases of the major facilitator superfamily 389 226 Op 2 1/0.822 + CDS 434004 - 435296 1499 ## COG3119 Arylsulfatase A and related enzymes 390 226 Op 3 . + CDS 435300 - 436100 443 ## PROTEIN SUPPORTED gi|145640905|ref|ZP_01796487.1| 50S ribosomal protein L17 391 226 Op 4 . + CDS 436118 - 437263 778 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 392 226 Op 5 . + CDS 437342 - 438166 414 ## COG4271 Predicted nucleotide-binding protein containing TIR -like domain 393 227 Op 1 . - CDS 438212 - 438961 258 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 394 227 Op 2 . - CDS 438958 - 439218 259 ## COG3423 Predicted transcriptional regulator - Prom 439245 - 439304 5.0 + Prom 439220 - 439279 5.5 395 228 Tu 1 6/0.135 + CDS 439322 - 439558 215 ## COG1396 Predicted transcriptional regulators + Prom 439563 - 439622 2.9 396 229 Tu 1 . + CDS 439666 - 439890 99 ## COG1396 Predicted transcriptional regulators + Prom 439927 - 439986 3.0 397 230 Tu 1 . + CDS 440023 - 441312 518 ## ECA1624 hypothetical protein 398 231 Tu 1 . - CDS 441368 - 442006 -172 ## Sbal195_3344 hypothetical protein 399 232 Op 1 . - CDS 442568 - 445210 2506 ## SARI_03123 hypothetical protein 400 232 Op 2 . - CDS 445210 - 445599 413 ## SARI_03122 hypothetical protein 401 232 Op 3 . - CDS 445599 - 446936 1176 ## SARI_03121 hypothetical protein 402 232 Op 4 . - CDS 446933 - 447721 626 ## ROD_33501 hypothetical protein 403 232 Op 5 . - CDS 447718 - 448344 554 ## SARI_03119 hypothetical protein 404 232 Op 6 . - CDS 448341 - 448694 253 ## ROD_33521 hypothetical protein 405 232 Op 7 . - CDS 448698 - 449024 453 ## SARI_03117 hypothetical protein 406 232 Op 8 . - CDS 449043 - 449276 269 ## SARI_03116 hypothetical protein 407 232 Op 9 . - CDS 449273 - 449584 266 ## SARI_03115 hypothetical protein + Prom 450868 - 450927 6.9 408 233 Tu 1 . + CDS 451057 - 452754 333 ## Saut_0059 hypothetical protein + Term 452763 - 452822 14.1 409 234 Op 1 . - CDS 452865 - 453545 269 ## SARI_03111 hypothetical protein 410 234 Op 2 . - CDS 453545 - 453811 117 ## SARI_03110 hypothetical protein 411 234 Op 3 . - CDS 453774 - 455807 1762 ## SARI_03109 hypothetical protein 412 234 Op 4 . - CDS 455804 - 456211 403 ## SARI_03108 hypothetical protein 413 234 Op 5 . - CDS 456208 - 456741 317 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 414 234 Op 6 . - CDS 456717 - 457367 581 ## ROD_33631 putative conjugative transfer system protein TraG 415 234 Op 7 . - CDS 457374 - 457982 367 ## ROD_33641 hypothetical protein 416 234 Op 8 . - CDS 457975 - 458439 324 ## SARI_03103 hypothetical protein - Term 458516 - 458548 3.0 417 235 Tu 1 . - CDS 458560 - 458976 474 ## SARI_03102 hypothetical protein 418 236 Op 1 . - CDS 459543 - 460034 299 ## ROD_33681 hypothetical protein 419 236 Op 2 . - CDS 460027 - 460725 572 ## SARI_03100 hypothetical protein - Prom 460817 - 460876 5.2 + Prom 460953 - 461012 4.9 420 237 Tu 1 . + CDS 461038 - 462075 128 ## PBPRA1504 hypothetical protein + Term 462235 - 462271 1.6 421 238 Op 1 . - CDS 462439 - 463032 -8 ## gi|283834955|ref|ZP_06354696.1| hypothetical protein CIT292_09216 - Prom 463079 - 463138 4.8 422 238 Op 2 . - CDS 463140 - 465452 1691 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 465622 - 465681 9.9 - Term 465624 - 465657 2.4 423 239 Tu 1 . - CDS 465731 - 466000 169 ## gi|283834957|ref|ZP_06354698.1| retron-type reverse transcriptase - Prom 466239 - 466298 4.5 - Term 466889 - 466922 -0.2 424 240 Tu 1 . - CDS 467007 - 467822 -173 ## gi|283834958|ref|ZP_06354699.1| conserved hypothetical protein - Prom 467879 - 467938 4.4 425 241 Op 1 . - CDS 469518 - 469673 143 ## gi|291086039|ref|ZP_06571311.1| conserved hypothetical protein 426 241 Op 2 . - CDS 469612 - 469785 58 ## + Prom 470054 - 470113 5.5 427 242 Tu 1 . + CDS 470211 - 470516 142 ## SeAg_B4813 putative transcriptional regulator HipB + Prom 470672 - 470731 2.8 428 243 Tu 1 . + CDS 470764 - 471849 270 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes - Term 471894 - 471944 -0.9 429 244 Op 1 . - CDS 472005 - 473138 607 ## SARI_03089 hypothetical protein 430 244 Op 2 . - CDS 473157 - 473696 670 ## SARI_03088 hypothetical protein 431 244 Op 3 . - CDS 473680 - 475164 1195 ## SARI_03087 hypothetical protein 432 244 Op 4 . - CDS 475161 - 476516 1129 ## COG0305 Replicative DNA helicase 433 244 Op 5 . - CDS 476509 - 476883 436 ## SARI_03085 hypothetical protein 434 244 Op 6 . - CDS 476880 - 477764 829 ## COG1192 ATPases involved in chromosome partitioning - Prom 477976 - 478035 5.7 + Prom 478180 - 478239 6.0 435 245 Tu 1 . + CDS 478306 - 478446 81 ## gi|283834967|ref|ZP_06354708.1| conserved hypothetical protein + Prom 478653 - 478712 7.1 436 246 Op 1 . + CDS 478752 - 479372 359 ## KPN_04712 hypothetical protein 437 246 Op 2 . + CDS 479372 - 480433 552 ## KPN_04713 hypothetical protein - Term 480541 - 480586 0.5 438 247 Tu 1 . - CDS 480590 - 481417 463 ## COG3440 Predicted restriction endonuclease - Prom 481498 - 481557 2.8 + Prom 481873 - 481932 6.9 439 248 Tu 1 3/0.491 + CDS 482112 - 483482 1662 ## COG3033 Tryptophanase + Term 483495 - 483526 4.1 + Prom 483560 - 483619 4.1 440 249 Tu 1 . + CDS 483672 - 484937 1436 ## COG0814 Amino acid permeases + Prom 485083 - 485142 3.3 441 250 Tu 1 . + CDS 485335 - 485547 96 ## gi|291086050|ref|ZP_06571320.1| conserved hypothetical protein + Prom 485718 - 485777 4.7 442 251 Op 1 17/0.000 + CDS 485875 - 486594 719 ## COG0247 Fe-S oxidoreductase 443 251 Op 2 13/0.012 + CDS 486605 - 488032 1552 ## COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain 444 251 Op 3 . + CDS 488025 - 488720 789 ## COG1556 Uncharacterized conserved protein + Term 488732 - 488778 0.7 - Term 488722 - 488761 6.1 445 252 Tu 1 . - CDS 488770 - 490113 1904 ## COG2610 H+/gluconate symporter and related permeases - Prom 490187 - 490246 3.7 + Prom 490220 - 490279 3.3 446 253 Op 1 7/0.092 + CDS 490375 - 491559 1641 ## COG1312 D-mannonate dehydratase + Term 491569 - 491603 3.0 447 253 Op 2 3/0.491 + CDS 491640 - 493115 1899 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 493128 - 493176 13.4 + Prom 493144 - 493203 2.7 448 254 Tu 1 . + CDS 493248 - 494021 956 ## COG2186 Transcriptional regulators + Term 494034 - 494076 3.0 + Prom 494448 - 494507 5.8 449 255 Tu 1 . + CDS 494668 - 494877 250 ## gi|261339643|ref|ZP_05967501.1| conserved hypothetical protein + Term 494966 - 494996 -1.0 + Prom 494977 - 495036 4.6 450 256 Tu 1 . + CDS 495056 - 496063 1190 ## COG3203 Outer membrane protein (porin) + Term 496086 - 496117 3.4 - Term 496074 - 496105 3.4 451 257 Tu 1 4/0.362 - CDS 496243 - 497430 1049 ## COG0477 Permeases of the major facilitator superfamily - Prom 497462 - 497521 8.9 - Term 497483 - 497526 0.6 452 258 Op 1 . - CDS 497528 - 498808 1499 ## COG2733 Predicted membrane protein 453 258 Op 2 . - CDS 498883 - 499809 903 ## COG0583 Transcriptional regulator - Prom 499868 - 499927 2.5 + Prom 499947 - 500006 3.9 454 259 Op 1 . + CDS 500033 - 501265 1566 ## COG1301 Na+/H+-dicarboxylate symporters 455 259 Op 2 . + CDS 501297 - 502487 1099 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Prom 502571 - 502630 6.0 456 260 Tu 1 . + CDS 502727 - 503287 301 ## COG3477 Predicted periplasmic/secreted protein 457 261 Tu 1 . - CDS 503373 - 504614 1127 ## COG0477 Permeases of the major facilitator superfamily - Prom 504864 - 504923 2.7 - Term 504760 - 504799 -0.8 458 262 Op 1 2/0.650 - CDS 504937 - 505599 557 ## COG1280 Putative threonine efflux protein 459 262 Op 2 . - CDS 505648 - 506463 315 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 506485 - 506544 3.7 + Prom 506482 - 506541 1.5 460 263 Tu 1 . + CDS 506694 - 507644 492 ## COG5464 Uncharacterized conserved protein 461 264 Tu 1 . - CDS 507696 - 509108 1114 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 509176 - 509235 4.9 + Prom 509151 - 509210 5.7 462 265 Tu 1 . + CDS 509286 - 509450 168 ## COG5457 Uncharacterized conserved small protein + Term 509467 - 509507 9.1 + Prom 509517 - 509576 4.3 463 266 Op 1 7/0.092 + CDS 509599 - 510063 465 ## COG1846 Transcriptional regulators 464 266 Op 2 . + CDS 510070 - 511137 1197 ## COG1566 Multidrug resistance efflux pump 465 266 Op 3 . + CDS 511127 - 512191 1282 ## CKO_03446 hypothetical protein 466 267 Tu 1 . - CDS 512298 - 512642 342 ## t4573 endoribonuclease SymE - Prom 512763 - 512822 3.6 - Term 512808 - 512836 1.0 467 268 Op 1 27/0.000 - CDS 512859 - 514574 732 ## COG0732 Restriction endonuclease S subunits 468 268 Op 2 5/0.252 - CDS 514574 - 516043 2009 ## COG0286 Type I restriction-modification system methyltransferase subunit - Term 516059 - 516102 6.2 469 269 Op 1 . - CDS 516118 - 518541 2846 ## COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 518567 - 518626 6.2 470 269 Op 2 . - CDS 518637 - 519803 1292 ## COG1715 Restriction endonuclease - Prom 519988 - 520047 6.0 + Prom 519941 - 520000 7.7 471 270 Op 1 5/0.252 + CDS 520037 - 520324 216 ## COG2929 Uncharacterized protein conserved in bacteria 472 270 Op 2 . + CDS 520311 - 520613 327 ## COG3514 Uncharacterized protein conserved in bacteria - Term 520479 - 520514 -0.7 473 271 Op 1 3/0.491 - CDS 520723 - 521679 1323 ## COG0523 Putative GTPases (G3E family) 474 271 Op 2 9/0.031 - CDS 521692 - 521886 289 ## COG2879 Uncharacterized small protein - Term 521896 - 521940 5.1 475 272 Tu 1 . - CDS 521992 - 524142 2941 ## COG1966 Carbon starvation protein, predicted membrane protein 476 273 Tu 1 . + CDS 524508 - 526169 2081 ## COG0840 Methyl-accepting chemotaxis protein + Term 526370 - 526424 4.1 - Term 526311 - 526353 -0.7 477 274 Op 1 6/0.135 - CDS 526356 - 526871 432 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 526875 - 526914 5.2 478 274 Op 2 3/0.491 - CDS 526924 - 528285 1574 ## COG0477 Permeases of the major facilitator superfamily - Prom 528338 - 528397 4.8 - Term 528338 - 528379 3.1 479 275 Tu 1 . - CDS 528499 - 529413 918 ## COG1802 Transcriptional regulators - Prom 529436 - 529495 4.1 + Prom 529458 - 529517 8.8 480 276 Op 1 2/0.650 + CDS 529551 - 530573 1164 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 481 276 Op 2 . + CDS 530587 - 532032 1622 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases + Term 532042 - 532082 7.0 + Prom 532037 - 532096 7.1 482 277 Tu 1 . + CDS 532182 - 534947 2618 ## COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain + Term 534978 - 535018 4.8 + Prom 534964 - 535023 2.0 483 278 Op 1 9/0.031 + CDS 535049 - 535471 428 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 484 278 Op 2 13/0.012 + CDS 535486 - 535947 463 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 485 278 Op 3 13/0.012 + CDS 535973 - 536752 902 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 486 278 Op 4 3/0.491 + CDS 536730 - 537590 985 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 487 278 Op 5 3/0.491 + CDS 537603 - 538664 1064 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 488 278 Op 6 . + CDS 538683 - 539693 921 ## COG2222 Predicted phosphosugar isomerases + Term 539696 - 539731 2.5 - Term 539689 - 539715 1.0 489 279 Tu 1 . - CDS 539721 - 542012 2328 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 542064 - 542123 4.3 - Term 542194 - 542236 4.8 490 280 Op 1 . - CDS 542244 - 542735 589 ## SSON_4506 hypothetical protein 491 280 Op 2 . - CDS 542805 - 543542 901 ## COG1484 DNA replication protein 492 280 Op 3 . - CDS 543545 - 544084 379 ## COG5529 Pyocin large subunit - Prom 544123 - 544182 1.8 493 281 Op 1 12/0.018 - CDS 544208 - 544681 559 ## COG3610 Uncharacterized conserved protein 494 281 Op 2 . - CDS 544672 - 545481 292 ## COG2966 Uncharacterized conserved protein - Prom 545729 - 545788 4.9 + Prom 545799 - 545858 4.0 495 282 Op 1 . + CDS 545904 - 546629 184 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 496 282 Op 2 . + CDS 546590 - 547267 277 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 497 283 Tu 1 . - CDS 547325 - 547783 268 ## COG2606 Uncharacterized conserved protein 498 284 Tu 1 . + CDS 548149 - 549492 1449 ## COG1455 Phosphotransferase system cellobiose-specific component IIC + Term 549499 - 549536 6.0 499 285 Tu 1 . - CDS 549522 - 550310 518 ## COG4114 Uncharacterized Fe-S protein - Prom 550344 - 550403 6.0 500 286 Tu 1 . - CDS 550419 - 551495 869 ## COG2199 FOG: GGDEF domain - Prom 551515 - 551574 5.4 + Prom 551628 - 551687 3.3 501 287 Tu 1 . + CDS 551712 - 551987 283 ## ROD_48711 hypothetical protein - TRNA 552027 - 552112 66.9 # Leu CAG 0 0 - TRNA 552144 - 552229 66.9 # Leu CAG 0 0 - TRNA 552258 - 552344 67.2 # Leu CAG 0 0 502 288 Tu 1 . - CDS 552567 - 553598 271 ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative - Prom 553621 - 553680 4.6 + Prom 553583 - 553642 5.6 503 289 Op 1 8/0.049 + CDS 553702 - 554115 429 ## COG3050 DNA polymerase III, psi subunit 504 289 Op 2 4/0.362 + CDS 554027 - 554530 663 ## PROTEIN SUPPORTED gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase 505 289 Op 3 3/0.491 + CDS 554545 - 555225 666 ## COG1011 Predicted hydrolase (HAD superfamily) 506 289 Op 4 5/0.252 + CDS 555318 - 556907 1940 ## COG4108 Peptide chain release factor RF-3 + Term 556916 - 556955 8.9 + Prom 557078 - 557137 3.3 507 290 Tu 1 . + CDS 557215 - 557832 752 ## COG2823 Predicted periplasmic or secreted lipoprotein 508 291 Tu 1 . + CDS 557960 - 558121 194 ## gi|157147615|ref|YP_001454934.1| hypothetical protein CKO_03415 + Term 558152 - 558182 4.3 + Prom 558155 - 558214 1.7 509 292 Op 1 4/0.362 + CDS 558242 - 559315 1030 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily 510 292 Op 2 . + CDS 559312 - 560088 674 ## COG0084 Mg-dependent DNase 511 293 Tu 1 . - CDS 560570 - 561304 688 ## COG1180 Pyruvate-formate lyase-activating enzyme - Term 561344 - 561380 3.5 512 294 Tu 1 . - CDS 561405 - 562955 1203 ## CKO_03411 hypothetical protein - Prom 563077 - 563136 4.4 + Prom 563111 - 563170 4.5 513 295 Tu 1 7/0.092 + CDS 563217 - 563996 1043 ## COG0274 Deoxyribose-phosphate aldolase + Term 564017 - 564057 4.3 514 296 Op 1 4/0.362 + CDS 564145 - 565467 1719 ## COG0213 Thymidine phosphorylase 515 296 Op 2 9/0.031 + CDS 565519 - 566742 1639 ## COG1015 Phosphopentomutase + Prom 566771 - 566830 3.7 516 297 Tu 1 . + CDS 566854 - 567573 1018 ## COG0813 Purine-nucleoside phosphorylase 517 298 Op 1 2/0.650 - CDS 567668 - 568684 1145 ## COG0095 Lipoate-protein ligase A 518 298 Op 2 . - CDS 568700 - 569335 695 ## COG3726 Uncharacterized membrane protein affecting hemolysin expression - Prom 569428 - 569487 4.1 519 299 Op 1 5/0.252 + CDS 569398 - 570420 1149 ## COG0560 Phosphoserine phosphatase 520 299 Op 2 1/0.822 + CDS 570504 - 571886 1512 ## COG1066 Predicted ATP-dependent serine protease + Prom 571942 - 572001 7.1 521 300 Tu 1 . + CDS 572027 - 573259 1393 ## COG3172 Predicted ATPase/kinase involved in NAD metabolism - Term 573255 - 573292 -0.1 522 301 Tu 1 . - CDS 573359 - 575026 2126 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 575129 - 575188 4.7 + Prom 574997 - 575056 2.9 523 302 Op 1 4/0.362 + CDS 575234 - 577171 1985 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 524 302 Op 2 . + CDS 577260 - 577586 347 ## COG2973 Trp operon repressor 525 303 Tu 1 . - CDS 577688 - 578203 555 ## COG1986 Uncharacterized conserved protein - Prom 578230 - 578289 4.0 + Prom 578154 - 578213 1.6 526 304 Tu 1 . + CDS 578255 - 578902 655 ## COG0406 Fructose-2,6-bisphosphatase 527 305 Tu 1 . - CDS 578899 - 579768 830 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 579977 - 580036 6.1 + Prom 579880 - 579939 6.5 528 306 Op 1 4/0.362 + CDS 579980 - 580453 487 ## COG3045 Uncharacterized protein conserved in bacteria 529 306 Op 2 40/0.000 + CDS 580466 - 581155 548 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 530 306 Op 3 6/0.135 + CDS 581155 - 582579 1447 ## COG0642 Signal transduction histidine kinase 531 306 Op 4 . + CDS 582637 - 584004 1230 ## COG4452 Inner membrane protein involved in colicin E2 resistance + Term 584035 - 584063 1.3 - Term 584016 - 584057 6.3 532 307 Tu 1 . - CDS 584075 - 584791 853 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 584822 - 584881 2.2 + Prom 585236 - 585295 7.6 533 308 Tu 1 . + CDS 585426 - 586112 485 ## COG0565 rRNA methylase 534 309 Tu 1 . - CDS 586252 - 586497 64 ## + Prom 586253 - 586312 3.0 535 310 Op 1 11/0.018 + CDS 586470 - 588932 2854 ## COG0527 Aspartokinases 536 310 Op 2 19/0.000 + CDS 588934 - 589863 867 ## COG0083 Homoserine kinase 537 310 Op 3 . + CDS 589867 - 591153 1583 ## COG0498 Threonine synthase + Term 591287 - 591339 2.1 - Term 591183 - 591211 -1.0 538 311 Op 1 5/0.252 - CDS 591218 - 591991 878 ## COG3022 Uncharacterized protein conserved in bacteria 539 311 Op 2 . - CDS 592069 - 593505 765 ## PROTEIN SUPPORTED gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 - Prom 593591 - 593650 5.6 + Prom 593555 - 593614 4.1 540 312 Tu 1 . + CDS 593774 - 594727 1231 ## COG0176 Transaldolase + Term 594733 - 594774 4.8 + Prom 594752 - 594811 2.8 541 313 Tu 1 . + CDS 594838 - 595425 708 ## PROTEIN SUPPORTED gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 + Prom 595431 - 595490 3.9 542 314 Tu 1 . + CDS 595550 - 596857 1152 ## COG0477 Permeases of the major facilitator superfamily 543 315 Tu 1 4/0.362 - CDS 596897 - 597463 829 ## COG1584 Predicted membrane protein - Prom 597535 - 597594 3.0 544 316 Op 1 . - CDS 597618 - 598325 708 ## COG4735 Uncharacterized protein conserved in bacteria 545 316 Op 2 . - CDS 598373 - 598777 147 ## SG0011 hypothetical protein - Prom 598869 - 598928 7.2 546 317 Op 1 31/0.000 + CDS 599162 - 601081 2421 ## COG0443 Molecular chaperone + Term 601108 - 601152 12.2 547 317 Op 2 1/0.822 + CDS 601169 - 602302 1369 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain + Term 602320 - 602372 9.3 + Prom 602339 - 602398 6.2 548 318 Op 1 5/0.252 + CDS 602509 - 603675 1205 ## COG3004 Na+/H+ antiporter 549 318 Op 2 . + CDS 603714 - 604607 881 ## COG0583 Transcriptional regulator + Term 604626 - 604669 10.1 - Term 604613 - 604656 7.1 550 319 Op 1 3/0.491 - CDS 604662 - 606701 1791 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 551 319 Op 2 1/0.822 - CDS 606742 - 608115 817 ## COG2211 Na+/melibiose symporter and related transporters - Prom 608320 - 608379 10.0 - Term 608509 - 608548 -0.5 552 320 Tu 1 . - CDS 608564 - 608827 422 ## PROTEIN SUPPORTED gi|227331521|ref|ZP_03835177.1| hypothetical protein CIT292_00917 - Prom 608868 - 608927 3.6 + Prom 609074 - 609133 6.7 553 321 Op 1 16/0.000 + CDS 609156 - 610094 397 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 554 321 Op 2 16/0.000 + CDS 610132 - 612948 3263 ## COG0060 Isoleucyl-tRNA synthetase 555 321 Op 3 7/0.092 + CDS 612948 - 613445 611 ## COG0597 Lipoprotein signal peptidase + Prom 613462 - 613521 4.6 556 322 Op 1 7/0.092 + CDS 613563 - 614012 272 ## PROTEIN SUPPORTED gi|225086978|ref|YP_002658248.1| ribosomal protein S2 557 322 Op 2 3/0.491 + CDS 614014 - 614964 440 ## PROTEIN SUPPORTED gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P + Term 614990 - 615026 5.1 558 323 Tu 1 . + CDS 615030 - 615944 993 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 615948 - 615978 1.8 559 324 Tu 1 . - CDS 615945 - 616853 734 ## COG0583 Transcriptional regulator - Prom 616907 - 616966 3.3 560 325 Tu 1 . + CDS 616946 - 617578 416 ## COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain + Term 617693 - 617733 8.4 + Prom 617700 - 617759 5.8 561 326 Tu 1 . + CDS 617847 - 618668 1069 ## COG0289 Dihydrodipicolinate reductase + Term 618685 - 618722 -0.8 562 327 Op 1 24/0.000 + CDS 619097 - 620272 1164 ## COG0505 Carbamoylphosphate synthase small subunit 563 327 Op 2 . + CDS 620290 - 623514 4350 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) + Term 623567 - 623606 7.7 + Prom 623550 - 623609 7.0 564 328 Tu 1 . + CDS 623791 - 624186 217 ## SG0071 DNA-binding transcriptional activator CaiF + Term 624289 - 624326 5.0 565 329 Tu 1 . - CDS 624263 - 624859 634 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - Prom 624892 - 624951 1.9 - Term 624888 - 624943 5.0 566 330 Op 1 5/0.252 - CDS 624969 - 625754 1053 ## COG1024 Enoyl-CoA hydratase/carnithine racemase - Term 625765 - 625806 4.5 567 330 Op 2 4/0.362 - CDS 625810 - 627363 1357 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 568 330 Op 3 8/0.049 - CDS 627425 - 628642 1401 ## COG1804 Predicted acyl-CoA transferases/carnitine dehydratase - Prom 628687 - 628746 3.9 569 331 Op 1 4/0.362 - CDS 628754 - 629896 1342 ## COG1960 Acyl-CoA dehydrogenases 570 331 Op 2 . - CDS 629931 - 631448 1799 ## COG1292 Choline-glycine betaine transporter - Prom 631605 - 631664 5.8 + Prom 631721 - 631780 5.1 571 332 Op 1 29/0.000 + CDS 631929 - 632699 765 ## COG2086 Electron transfer flavoprotein, beta subunit 572 332 Op 2 9/0.031 + CDS 632715 - 633656 1033 ## COG2025 Electron transfer flavoprotein, alpha subunit 573 332 Op 3 12/0.018 + CDS 633706 - 634992 1350 ## COG0644 Dehydrogenases (flavoproteins) 574 332 Op 4 4/0.362 + CDS 634989 - 635276 309 ## COG2440 Ferredoxin-like protein 575 333 Op 1 . + CDS 635424 - 636767 1450 ## COG0477 Permeases of the major facilitator superfamily + Prom 636769 - 636828 2.2 576 333 Op 2 . + CDS 636858 - 637091 325 ## CKO_03336 hypothetical protein + Prom 637222 - 637281 2.9 577 334 Op 1 7/0.092 + CDS 637376 - 637906 599 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 578 334 Op 2 4/0.362 + CDS 637899 - 639761 1000 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 + Prom 639874 - 639933 4.1 579 335 Tu 1 . + CDS 639960 - 640439 608 ## COG0262 Dihydrofolate reductase 580 336 Op 1 8/0.049 - CDS 640530 - 641378 839 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 581 336 Op 2 8/0.049 - CDS 641389 - 641766 438 ## COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport 582 336 Op 3 12/0.018 - CDS 641769 - 642590 785 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 583 336 Op 4 13/0.012 - CDS 642583 - 643575 446 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 584 336 Op 5 16/0.000 - CDS 643575 - 644861 1470 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 585 336 Op 6 . - CDS 644915 - 647269 2440 ## COG1452 Organic solvent tolerance protein OstA - Prom 647361 - 647420 2.5 + Prom 647241 - 647300 3.5 586 337 Tu 1 . + CDS 647525 - 648340 778 ## COG1076 DnaJ-domain-containing proteins 1 + Term 648345 - 648386 2.5 - Term 648332 - 648372 0.7 587 338 Op 1 7/0.092 - CDS 648429 - 649088 220 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 588 338 Op 2 5/0.252 - CDS 649099 - 652005 3434 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 652069 - 652128 2.7 589 339 Tu 1 . - CDS 652183 - 654534 2086 ## COG0417 DNA polymerase elongation subunit (family B) - Prom 654557 - 654616 7.2 + Prom 654996 - 655055 8.0 590 340 Tu 1 . + CDS 655105 - 655491 228 ## SARI_02905 hypothetical protein - Term 655291 - 655321 0.3 591 341 Op 1 5/0.252 - CDS 655529 - 656224 975 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - Prom 656246 - 656305 1.7 592 341 Op 2 7/0.092 - CDS 656321 - 657823 1723 ## COG2160 L-arabinose isomerase 593 341 Op 3 . - CDS 657834 - 659543 1524 ## COG1069 Ribulose kinase - Prom 659615 - 659674 2.5 + Prom 659703 - 659762 3.5 594 342 Tu 1 . + CDS 659883 - 660728 773 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 660766 - 660825 3.2 595 343 Tu 1 . + CDS 660848 - 661615 872 ## COG0586 Uncharacterized membrane-associated protein 596 344 Op 1 11/0.018 - CDS 661713 - 662411 273 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 597 344 Op 2 14/0.006 - CDS 662395 - 664005 1661 ## COG1178 ABC-type Fe3+ transport system, permease component 598 344 Op 3 2/0.650 - CDS 663981 - 664964 1151 ## COG4143 ABC-type thiamine transport system, periplasmic component 599 345 Tu 1 . - CDS 665141 - 666796 1540 ## COG4533 ABC-type uncharacterized transport system, periplasmic component - Prom 666845 - 666904 4.2 + Prom 666784 - 666843 3.3 600 346 Tu 1 . + CDS 666896 - 667018 114 ## + Term 667077 - 667111 6.0 + Prom 667039 - 667098 4.3 601 347 Tu 1 . + CDS 667135 - 668313 1430 ## COG0477 Permeases of the major facilitator superfamily 602 348 Op 1 30/0.000 - CDS 668404 - 669009 749 ## COG0066 3-isopropylmalate dehydratase small subunit 603 348 Op 2 10/0.025 - CDS 669020 - 670420 1749 ## COG0065 3-isopropylmalate dehydratase large subunit 604 348 Op 3 11/0.018 - CDS 670423 - 671514 1264 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 605 348 Op 4 . - CDS 671514 - 673085 1783 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases - Prom 673190 - 673249 2.9 + Prom 673618 - 673677 6.6 606 349 Tu 1 . + CDS 673916 - 674863 506 ## COG0583 Transcriptional regulator + Term 674870 - 674918 13.2 + Prom 674968 - 675027 4.8 607 350 Op 1 32/0.000 + CDS 675182 - 676906 1938 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 608 350 Op 2 3/0.491 + CDS 676909 - 677400 516 ## COG0440 Acetolactate synthase, small (regulatory) subunit + Prom 677470 - 677529 4.4 609 351 Tu 1 . + CDS 677604 - 678656 975 ## COG1609 Transcriptional regulators + Term 678663 - 678720 7.4 + Prom 679166 - 679225 4.0 610 352 Op 1 29/0.000 + CDS 679270 - 679728 244 ## COG2001 Uncharacterized protein conserved in bacteria 611 352 Op 2 12/0.018 + CDS 679730 - 680671 947 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 612 352 Op 3 12/0.018 + CDS 680668 - 681033 252 ## COG3116 Cell division protein 613 352 Op 4 26/0.000 + CDS 681049 - 682815 1712 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 614 352 Op 5 26/0.000 + CDS 682802 - 684289 1539 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 615 352 Op 6 28/0.000 + CDS 684286 - 685644 1504 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 616 352 Op 7 28/0.000 + CDS 685638 - 686720 1470 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 617 352 Op 8 25/0.000 + CDS 686723 - 688039 1392 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 618 352 Op 9 31/0.000 + CDS 688039 - 689283 1430 ## COG0772 Bacterial cell division membrane protein 619 352 Op 10 26/0.000 + CDS 689280 - 690347 1127 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 620 352 Op 11 11/0.018 + CDS 690399 - 691874 1463 ## COG0773 UDP-N-acetylmuramate-alanine ligase 621 352 Op 12 18/0.000 + CDS 691867 - 692787 1147 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 622 352 Op 13 25/0.000 + CDS 692789 - 693622 531 ## COG1589 Cell division septal protein 623 352 Op 14 35/0.000 + CDS 693619 - 694881 1169 ## COG0849 Actin-like ATPase involved in cell division 624 352 Op 15 11/0.018 + CDS 694944 - 696095 1592 ## COG0206 Cell division GTPase + Prom 696106 - 696165 1.9 625 352 Op 16 . + CDS 696196 - 697113 882 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase + Term 697137 - 697192 10.2 + Prom 697173 - 697232 5.7 626 353 Op 1 . + CDS 697396 - 697902 260 ## EFER_0119 SecA regulator SecM + Term 697933 - 697961 0.5 627 353 Op 2 8/0.049 + CDS 697964 - 700669 3390 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 700689 - 700719 3.0 628 353 Op 3 . + CDS 700720 - 701115 368 ## PROTEIN SUPPORTED gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes + Term 701240 - 701274 4.7 629 354 Op 1 7/0.092 - CDS 701282 - 701476 209 ## COG3024 Uncharacterized protein conserved in bacteria 630 354 Op 2 7/0.092 - CDS 701486 - 702229 651 ## COG4582 Uncharacterized protein conserved in bacteria 631 354 Op 3 . - CDS 702229 - 702849 524 ## COG0237 Dephospho-CoA kinase - Prom 702952 - 703011 4.8 + Prom 702900 - 702959 2.9 632 355 Tu 1 . + CDS 703075 - 704118 1022 ## COG0516 IMP dehydrogenase/GMP reductase - Term 704116 - 704151 4.0 633 356 Op 1 24/0.000 - CDS 704153 - 705355 637 ## COG1459 Type II secretory pathway, component PulF 634 356 Op 2 8/0.049 - CDS 705345 - 706727 717 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 635 356 Op 3 5/0.252 - CDS 706737 - 707174 469 ## COG4969 Tfp pilus assembly protein, major pilin PilA - Prom 707260 - 707319 3.5 636 357 Tu 1 . - CDS 707404 - 708297 442 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 - Prom 708331 - 708390 2.7 + Prom 708287 - 708346 2.9 637 358 Op 1 6/0.135 + CDS 708385 - 708948 444 ## COG3023 Negative regulator of beta-lactamase expression 638 358 Op 2 . + CDS 708945 - 709799 977 ## COG3725 Membrane protein required for beta-lactamase induction + Term 709971 - 710013 0.0 - Term 709839 - 709883 -0.7 639 359 Op 1 1/0.822 - CDS 709894 - 710844 983 ## PROTEIN SUPPORTED gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase 640 359 Op 2 1/0.822 - CDS 710844 - 712250 1538 ## COG2211 Na+/melibiose symporter and related transporters - Prom 712308 - 712367 3.5 - Term 712365 - 712399 8.3 641 360 Tu 1 . - CDS 712408 - 713778 1723 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 713848 - 713907 4.4 + Prom 714165 - 714224 6.6 642 361 Tu 1 . + CDS 714346 - 715110 633 ## COG2186 Transcriptional regulators + Prom 715115 - 715174 3.6 643 362 Op 1 13/0.012 + CDS 715395 - 718058 3368 ## COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component 644 362 Op 2 30/0.000 + CDS 718073 - 719971 1852 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 719980 - 720009 3.5 + Prom 720042 - 720101 7.9 645 362 Op 3 . + CDS 720147 - 721571 688 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 721580 - 721631 8.1 + Prom 721756 - 721815 4.9 646 363 Op 1 . + CDS 721841 - 722125 326 ## KP1_0945 putative secreted protein 647 363 Op 2 . + CDS 722335 - 723066 943 ## ESA_03219 hypothetical protein + Term 723080 - 723119 7.9 - Term 722862 - 722892 0.3 648 364 Op 1 . - CDS 723133 - 723924 656 ## Ent638_0663 putative periplasmic protein 649 364 Op 2 . - CDS 723937 - 725583 897 ## SG0159 hypothetical protein - Prom 725830 - 725889 6.8 + Prom 725770 - 725829 5.1 650 365 Tu 1 . + CDS 725984 - 728581 3570 ## COG1049 Aconitase B + Term 728615 - 728654 9.1 + Prom 728622 - 728681 3.9 651 366 Tu 1 . + CDS 728756 - 729118 459 ## COG3112 Uncharacterized protein conserved in bacteria + Term 729124 - 729155 4.8 652 367 Tu 1 . - CDS 729152 - 729460 323 ## ECSE_0122 hypothetical protein - Prom 729606 - 729665 3.1 + Prom 729557 - 729616 2.4 653 368 Tu 1 . + CDS 729653 - 731257 1397 ## COG2132 Putative multicopper oxidases - Term 731251 - 731286 1.2 654 369 Tu 1 . - CDS 731360 - 733762 2523 ## COG4993 Glucose dehydrogenase - Prom 733785 - 733844 5.9 + Prom 733766 - 733825 6.1 655 370 Tu 1 . + CDS 733954 - 734490 850 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Term 734544 - 734597 7.6 656 371 Tu 1 . - CDS 734587 - 735309 621 ## COG0288 Carbonic anhydrase - Prom 735340 - 735399 5.7 657 372 Op 1 45/0.000 + CDS 735358 - 736284 960 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein 658 372 Op 2 3/0.491 + CDS 736281 - 737051 1063 ## COG0842 ABC-type multidrug transport system, permease component + Term 737057 - 737097 8.2 659 373 Op 1 4/0.362 + CDS 737155 - 737595 404 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 660 373 Op 2 . + CDS 737662 - 738891 990 ## COG0726 Predicted xylanase/chitin deacetylase + Term 739100 - 739141 1.0 661 374 Op 1 . - CDS 738892 - 739959 938 ## SeHA_C0205 putative fimbrial protein 662 374 Op 2 . - CDS 739976 - 740590 493 ## ECL_00937 putative fimbrial protein 663 374 Op 3 . - CDS 740612 - 741172 546 ## ECL_00938 putative fimbrial protein 664 374 Op 4 6/0.135 - CDS 741195 - 741767 662 ## COG3539 P pilus assembly protein, pilin FimA 665 374 Op 5 10/0.025 - CDS 741801 - 744314 2552 ## COG3188 P pilus assembly protein, porin PapC - Prom 744343 - 744402 5.5 - Term 744384 - 744417 2.1 666 375 Op 1 . - CDS 744424 - 745146 751 ## COG3121 P pilus assembly protein, chaperone PapD 667 375 Op 2 . - CDS 745207 - 745818 641 ## ECL_00942 hypothetical protein - Prom 745916 - 745975 6.0 - Term 746063 - 746097 2.2 668 376 Op 1 12/0.018 - CDS 746111 - 746491 518 ## COG0853 Aspartate 1-decarboxylase - Term 746512 - 746538 -0.6 669 376 Op 2 19/0.000 - CDS 746584 - 747438 1040 ## COG0414 Panthothenate synthetase - Prom 747465 - 747524 4.0 670 376 Op 3 4/0.362 - CDS 747564 - 748355 953 ## COG0413 Ketopantoate hydroxymethyltransferase - Prom 748384 - 748443 5.2 671 377 Tu 1 7/0.092 - CDS 748476 - 748967 213 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 672 378 Tu 1 1/0.822 - CDS 749078 - 750442 1426 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 750464 - 750523 2.0 673 379 Op 1 3/0.491 - CDS 750547 - 751443 713 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Term 751451 - 751488 6.1 674 379 Op 2 6/0.135 - CDS 751513 - 751968 558 ## COG1734 DnaK suppressor protein - Prom 752022 - 752081 1.7 - Term 752046 - 752081 -0.1 675 380 Op 1 3/0.491 - CDS 752146 - 752850 300 ## COG1489 DNA-binding protein, stimulates sugar fermentation 676 380 Op 2 . - CDS 752866 - 753396 403 ## COG1514 2'-5' RNA ligase - Prom 753418 - 753477 4.5 677 381 Tu 1 . + CDS 753425 - 755899 2101 ## COG1643 HrpA-like helicases 678 382 Tu 1 . + CDS 756039 - 758579 3343 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 758746 - 758791 3.1 679 383 Tu 1 . - CDS 759200 - 759433 83 ## gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) + Prom 760129 - 760188 4.6 680 384 Op 1 7/0.092 + CDS 760229 - 762478 2364 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Term 762488 - 762518 5.0 681 384 Op 2 14/0.006 + CDS 762526 - 763323 217 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 682 384 Op 3 33/0.000 + CDS 763323 - 764213 884 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 683 384 Op 4 . + CDS 764228 - 766267 2190 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component + Term 766323 - 766363 5.4 - Term 766260 - 766298 0.4 684 385 Tu 1 . - CDS 766364 - 767644 1625 ## COG0001 Glutamate-1-semialdehyde aminotransferase - Prom 767677 - 767736 5.4 + Prom 767721 - 767780 3.2 685 386 Op 1 3/0.491 + CDS 767924 - 769234 1556 ## COG0038 Chloride channel protein EriC + Prom 769236 - 769295 1.8 686 386 Op 2 . + CDS 769316 - 769660 460 ## COG0316 Uncharacterized conserved protein + Term 769724 - 769774 -0.8 687 387 Op 1 6/0.135 - CDS 769780 - 770403 743 ## COG2860 Predicted membrane protein 688 387 Op 2 5/0.252 - CDS 770441 - 771241 604 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 689 387 Op 3 . - CDS 771234 - 771932 908 ## COG0775 Nucleoside phosphorylase - Prom 772033 - 772092 3.1 + Prom 771925 - 771984 2.5 690 388 Tu 1 . + CDS 772016 - 773533 1054 ## COG0232 dGTP triphosphohydrolase + Prom 773555 - 773614 3.6 691 389 Op 1 2/0.650 + CDS 773663 - 775096 1621 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 775107 - 775140 5.4 + Prom 775110 - 775169 2.7 692 389 Op 2 . + CDS 775191 - 776402 1480 ## COG3835 Sugar diacid utilization regulator + Term 776520 - 776554 -0.5 693 390 Tu 1 . - CDS 776497 - 776883 579 ## ECIAI1_0162 hypothetical protein - Prom 776909 - 776968 2.8 - Term 776949 - 776977 2.1 694 391 Op 1 5/0.252 - CDS 776993 - 777817 1055 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 695 391 Op 2 9/0.031 - CDS 777849 - 780521 2456 ## COG2844 UTP:GlnB (protein PII) uridylyltransferase - Term 780529 - 780572 4.1 696 392 Tu 1 . - CDS 780635 - 781429 992 ## COG0024 Methionine aminopeptidase + Prom 781441 - 781500 1.9 697 393 Op 1 . + CDS 781551 - 781742 273 ## PROTEIN SUPPORTED gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2 698 393 Op 2 38/0.000 + CDS 781754 - 782479 1225 ## PROTEIN SUPPORTED gi|16759206|ref|NP_454823.1| 30S ribosomal protein S2 + Term 782534 - 782562 1.3 699 393 Op 3 24/0.000 + CDS 782614 - 783465 990 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 783469 - 783514 7.4 + Prom 783484 - 783543 3.8 700 394 Op 1 33/0.000 + CDS 783612 - 784337 900 ## COG0528 Uridylate kinase + Prom 784349 - 784408 2.8 701 394 Op 2 8/0.049 + CDS 784477 - 785034 672 ## COG0233 Ribosome recycling factor + Term 785071 - 785114 0.4 702 394 Op 3 7/0.092 + CDS 785132 - 786328 973 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase + Term 786433 - 786462 0.4 + Prom 786467 - 786526 3.3 703 395 Op 1 32/0.000 + CDS 786584 - 787273 499 ## COG0020 Undecaprenyl pyrophosphate synthase 704 395 Op 2 12/0.018 + CDS 787286 - 788143 716 ## COG0575 CDP-diglyceride synthetase 705 395 Op 3 18/0.000 + CDS 788155 - 789507 916 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 706 395 Op 4 17/0.000 + CDS 789537 - 791954 2696 ## COG4775 Outer membrane protein/protective antigen OMA87 707 395 Op 5 15/0.000 + CDS 792077 - 792562 513 ## COG2825 Outer membrane protein 708 395 Op 6 18/0.000 + CDS 792566 - 793591 835 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase + Term 793620 - 793666 6.1 + Prom 793610 - 793669 3.7 709 396 Op 1 25/0.000 + CDS 793696 - 794151 504 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 710 396 Op 2 11/0.018 + CDS 794155 - 794943 737 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 711 396 Op 3 11/0.018 + CDS 794943 - 796091 1110 ## COG0763 Lipid A disaccharide synthetase 712 396 Op 4 6/0.135 + CDS 796088 - 796684 541 ## COG0164 Ribonuclease HII 713 396 Op 5 7/0.092 + CDS 796709 - 800191 4004 ## COG0587 DNA polymerase III, alpha subunit 714 396 Op 6 3/0.491 + CDS 800204 - 801163 1271 ## COG0825 Acetyl-CoA carboxylase alpha subunit + Term 801178 - 801219 9.7 + Prom 801183 - 801242 6.3 715 397 Op 1 1/0.822 + CDS 801263 - 803401 2166 ## COG1982 Arginine/lysine/ornithine decarboxylases 716 397 Op 2 2/0.650 + CDS 803469 - 803858 358 ## COG0346 Lactoylglutathione lyase and related lyases 717 397 Op 3 . + CDS 803920 - 805212 1043 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 718 398 Op 1 . - CDS 805296 - 805550 265 ## COG4568 Transcriptional antiterminator 719 398 Op 2 . - CDS 805543 - 805743 153 ## ROD_01982 hypothetical protein - Prom 805815 - 805874 2.5 + Prom 805754 - 805813 3.1 720 399 Op 1 5/0.252 + CDS 805932 - 806477 662 ## COG4681 Uncharacterized protein conserved in bacteria 721 399 Op 2 4/0.362 + CDS 806474 - 806896 199 ## COG1186 Protein chain release factor B 722 399 Op 3 . + CDS 806930 - 807625 652 ## COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance + Term 807638 - 807668 4.3 - Term 807621 - 807662 8.4 723 400 Tu 1 . - CDS 807668 - 809386 2153 ## COG0442 Prolyl-tRNA synthetase - Prom 809410 - 809469 2.6 - Term 809406 - 809432 -0.6 724 401 Op 1 . - CDS 809500 - 810207 556 ## COG1720 Uncharacterized conserved protein 725 401 Op 2 . - CDS 810204 - 810557 355 ## SG0248 outer membrane lipoprotein - Prom 810599 - 810658 1.8 - Term 810656 - 810692 6.7 726 402 Op 1 22/0.000 - CDS 810725 - 811540 1274 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 727 402 Op 2 32/0.000 - CDS 811585 - 812238 845 ## COG2011 ABC-type metal ion transport system, permease component 728 402 Op 3 . - CDS 812231 - 813262 1303 ## COG1135 ABC-type metal ion transport system, ATPase component + Prom 813224 - 813283 3.9 729 403 Tu 1 . + CDS 813452 - 814018 472 ## COG0241 Histidinol phosphatase and related phosphatases Predicted protein(s) >gi|283548477|gb|GG730300.1| GENE 1 44 - 235 58 63 aa, chain - ## HITS:1 COG:no KEGG:COXBURSA331_A0274 NR:ns ## KEGG: COXBURSA331_A0274 # Name: not_defined # Def: hypothetical protein # Organism: C.burnetii_RSA331 # Pathway: not_defined # 1 63 1 63 63 100 82.0 1e-20 MIQPQVPLRLPCYDFTPVMNHKVVSALPKVKLPTSFATHSHGVTGGVYKARERIHRGILI HDY >gi|283548477|gb|GG730300.1| GENE 2 1183 - 2028 490 281 aa, chain - ## HITS:1 COG:STM3897 KEGG:ns NR:ns ## COG: STM3897 COG0583 # Protein_GI_number: 16767173 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 281 1 281 282 466 87.0 1e-131 MERVVDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIR LTAAGEKLLPYAETLMNTWQAARKEVANTSRHNEFSIGASASLWECMLNDWLRRLYQSQE PQSSLQFEARIAQRQSLVKQLHERQLDLLITTETPKMDEFSSQLLGYFTLALYCSTPSQT KDELNYLRLEWGPDFQQHEAGLIAGDEVPVLTTSSAELARQQLSVLKGFSWLPVNWAKAK SDLHTLTESTTLSRPLYAVWLQNSDKHALICDLLRTKILED >gi|283548477|gb|GG730300.1| GENE 3 2135 - 2473 442 112 aa, chain + ## HITS:1 COG:ECs4699 KEGG:ns NR:ns ## COG: ECs4699 COG3085 # Protein_GI_number: 15833953 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 112 1 112 112 204 98.0 4e-53 MAESFTTTNRYFDNKYYPRGFSRHGDFTIKEAQLLERHGYAFNELDLGKREPVTEEEKLF VAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTESDD >gi|283548477|gb|GG730300.1| GENE 4 2499 - 4019 846 506 aa, chain - ## HITS:1 COG:ECs4700 KEGG:ns NR:ns ## COG: ECs4700 COG0606 # Protein_GI_number: 15833954 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Escherichia coli O157:H7 # 1 506 11 516 516 860 86.0 0 MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEF PAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTAHNLDTYELVGELALTGTLRGVP GAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIAEHLQAVCAFLEGKHDLDRPLSAD FTPDALTDDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND EALESAAILSLVNSATIHKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFL DELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCT PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKGEDSATVKQRVIAARERQFRR QNKLNAHLDSQDIHEYCQLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADLEQCDYI TRQHLQEAVGYRAIDRLLIHLQKLLT >gi|283548477|gb|GG730300.1| GENE 5 4607 - 6253 1369 548 aa, chain + ## HITS:1 COG:STM3901 KEGG:ns NR:ns ## COG: STM3901 COG0028 # Protein_GI_number: 16767177 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Salmonella typhimurium LT2 # 1 548 1 548 548 1058 95.0 0 MNGAQWVVHALRAQGVQTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA TGKTGVCIATSGPGATNLITGLADALLDSVPVVAITGQVASPFIGTDAFQEVDVLGMSLS CTKHSFLVQSLEELPRIMAEAFDVANAGRPGPVLVDIPKDIQLASGTLEPYFTTVGNVET FPHADVEQARNMLAQAQKPILYVGGGVGMAQAVPALREFIALTQMPVACTLKGLGAVEAD YPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPNASVIHMDIDPAEM NKLRQAHVALQGDLNSLLPALQQPLKIDAWRQYCAELRAEYAWRYDHPGDAIYAPLLLKQ LSERKPADSVVTTDVGQHQMWSAQHMTYTRPENFITSSGLGTMGFGLPAAVGAQVARPND TVICISGDGSFMVNVQELGTVKRRQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTD NPDFLMLASAFGIPGQHITRKDQVEAALDTMLNSEGPYLLHVSIDELENVWPLVPPGASN SEMLEKLS >gi|283548477|gb|GG730300.1| GENE 6 6250 - 6513 227 87 aa, chain + ## HITS:1 COG:ECs4703 KEGG:ns NR:ns ## COG: ECs4703 COG3978 # Protein_GI_number: 15833957 # Func_class: S Function unknown # Function: Acetolactate synthase (isozyme II), small (regulatory) subunit # Organism: Escherichia coli O157:H7 # 1 87 1 87 87 134 94.0 4e-32 MMHHQVAVEARFNPETLERVLRVVRHRGFQVCSMNMAAASDAQNINIELTVASPRSVDLL FSQLSKLVDVAHVAICQSTTTSQQIRA >gi|283548477|gb|GG730300.1| GENE 7 6531 - 7460 1141 309 aa, chain + ## HITS:1 COG:ECs4704 KEGG:ns NR:ns ## COG: ECs4704 COG0115 # Protein_GI_number: 15833958 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Escherichia coli O157:H7 # 1 309 1 309 309 625 96.0 1e-179 MTTKKADYIWSNGEMIRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQR LRDSAKIYRFPVSQSVDELMEACREVIRKNNLTSAYIRPLVFVGDVGMGVNPPAGYTTDV IIAAFPWGAYLGAEALEQGIDAMVSSWNRVAPNTIPTAAKAGGNYLSSLLVGSEARRHGY QEGIALDVNGYISEGAGENLFEVKDGILFTPPFTSSALPGITRDAIIKLAKDLDIEVREQ VLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFGLFTGETEDK YGWLDQVNQ >gi|283548477|gb|GG730300.1| GENE 8 7521 - 9371 2317 616 aa, chain + ## HITS:1 COG:STM3904 KEGG:ns NR:ns ## COG: STM3904 COG0129 # Protein_GI_number: 16767180 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Salmonella typhimurium LT2 # 1 616 1 616 616 1185 97.0 0 MPKYRSATTTHGRNMAGARALWRATGMTDDDFGKPIIAVVNSFTQFVPGHVHLRDLGKLV AEQIEASGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQ SEQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKELFLTAGQRIV ELTKRYYEQNDDSALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSD IDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVLGILGELDRAGLLNRDVKNVLGLTLPQT LEQYDITVTQDEAVKKMFRAGPAGIRTTQAFSQDCRWDSLDDDRAAGCIRSLEHAYSKDG GLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDEAVEAILGGKVVEGDVVVIRY EGPKGGPGMQEMLYPTTFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGNIAI IEDGDMIAIDIPNRGIQLQLSEAEIAARREAQEARGDKAWTPKDRQRQVSFALRAYASLA TSADKGAVRDKSKLGG >gi|283548477|gb|GG730300.1| GENE 9 9377 - 10921 1641 514 aa, chain + ## HITS:1 COG:ECs4706 KEGG:ns NR:ns ## COG: ECs4706 COG1171 # Protein_GI_number: 15833960 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1 514 1 514 514 986 97.0 0 MADSQPLSAAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHS FKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA VRGFGGEVLLHGANFDEAKAKAIELAQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHL DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAE GVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI AQHNIRGERLAHILSGANVNFHCLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLG GRSVTEFNYRFADAKDACIFVGVRLSRGLEERKEILQLLNEGGYSVVDLSDDEMAKLHVR YMVGGRPSKPLQERLYSFEFPESPGALLKFLHTLGTHWNISLFHYRSHGTDYGRVLAAFE LGEHEPDFETRLNELGYDCHDETHNPAFRFFLAG >gi|283548477|gb|GG730300.1| GENE 10 10984 - 12177 1495 397 aa, chain - ## HITS:1 COG:XF1835 KEGG:ns NR:ns ## COG: XF1835 COG3007 # Protein_GI_number: 15838433 # Func_class: S Function unknown # Function: Uncharacterized paraquat-inducible protein B # Organism: Xylella fastidiosa 9a5c # 1 397 24 424 424 545 65.0 1e-155 MIIKPKIRGFICTTTHPTGCKVNVEKQIEYVKQNGKIENGPSRVLVIGASTGYGLASRIS AAFGSGAATIGVFFEKPGTETKPGSAGWYNSAAFDEAAKREGLYSKSINGDAFSDECRDE VIKLIKEDLGQIDLVVYSLASPVRKMPKTGEIVRSALKPIGEVYTSKAIDTNKDQIITAS IEPATDEEVQNTVTVMGGEDWELWMGALSEAGVLADGVKTVAYSYIGTDLTWPIYWHGAL GKAKEDLDRAAGALRNQLAPLNGSANVAVLKSVITQASSAIPVMPLYISMVFKLMKEQGI HEGCIEQINRLMTTSLYGDKVALDDNQRIRMDDWELRDDIQQACRDLWPLITTENLAQET DYAGYKQEFLNLFGFALDGVDYDADVNTEVEFDVITL >gi|283548477|gb|GG730300.1| GENE 11 12352 - 13254 997 300 aa, chain - ## HITS:1 COG:STM3908 KEGG:ns NR:ns ## COG: STM3908 COG0583 # Protein_GI_number: 16767184 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 293 1 293 295 548 97.0 1e-156 MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEA GEELRVFAQQTLLQYQQLRHTLDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSV EIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPVRNQ VSTDKPDWSTVPFIMADQGPVRRRIELWFRRHKISNPSIYATVGGHEAMVSMVALGCGVA LIPEVVLENSPEPVRNRVMILERSDEKTPFELGVCVQKKRLHEPLVDAFWKIVLERKTTE >gi|283548477|gb|GG730300.1| GENE 12 13413 - 14888 2155 491 aa, chain + ## HITS:1 COG:STM3909 KEGG:ns NR:ns ## COG: STM3909 COG0059 # Protein_GI_number: 16767185 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Salmonella typhimurium LT2 # 1 491 1 491 491 945 97.0 0 MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSG LDIAYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVVNLTPDKQHSDVVRSVQP LMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPE NDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKL VAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLF QKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQFEGKIGEQEYFDKGVL MIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYG NYLFSYACVPLLKEFMTTLQTGDLGKAIAEGAVDNAQLRDVNDAIRGHAIEKVGQKLRGY MTDMKRIAVAG >gi|283548477|gb|GG730300.1| GENE 13 15004 - 15285 270 93 aa, chain - ## HITS:1 COG:ECs4709 KEGG:ns NR:ns ## COG: ECs4709 COG0760 # Protein_GI_number: 15833963 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Escherichia coli O157:H7 # 1 93 1 93 93 183 95.0 6e-47 MAKTAAAVHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP AFDKLVFSCPVLEPVGPLHTQFGYHIVKVLYRN >gi|283548477|gb|GG730300.1| GENE 14 15371 - 17392 2394 673 aa, chain + ## HITS:1 COG:STM3912 KEGG:ns NR:ns ## COG: STM3912 COG0210 # Protein_GI_number: 16767188 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 1 673 1 673 674 1273 95.0 0 MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAA REMKERVAQTLGRKEARGLMISTFHTLGLDVIKREYAALGMKSNFSLFDDTDQVALLKEL TEGLIEDDKLILQQLISTISNWKNDLMTPAQAAASAKGERDRIFAHCYGLYDAHMKACNV LDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGKRARFTVV GDDDQSIYSWRGARPQNLVLLSKDFPALQVVKLEQNYRSSGRILKAANILIANNPHVFEK RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEK FLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLSNPDDDSAFLRIVNTPKREIGSATLQK LGEWAMTRNKSLFTASFDMGLSQTLTGRGYDSLTRFTHWLGEIQRLAEREPVAAVRDLIH GIDYESWLYETSPSPKAAEMRMKNVNTLFGWMTEMLEGSELEEPMTLTQVVTRFTLRDMM ERGESEEELDQVQLMTLHASKGLEFPYVFMVGMEEGFLPHQSSIDEDNIDEERRLAYVGI TRAQKELIFTLCKERRQYGELVRPEPSRFLLELPQDDVIWEQERKVVSAEERMQKGQASI ANIRAMMAKAKEK >gi|283548477|gb|GG730300.1| GENE 15 17440 - 18921 1449 493 aa, chain - ## HITS:1 COG:ECs4712 KEGG:ns NR:ns ## COG: ECs4712 COG0248 # Protein_GI_number: 15833966 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Escherichia coli O157:H7 # 2 493 3 494 494 878 90.0 0 MNSTSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAAGLNSDYVLSTEAMERGW QCLRLFAERLQDIPHPQIRVVATATLRIAVNADVFIAKAQEILGCPVQVISGEEEARLIY QGVAHTTGGADQRLVVDIGGASTELVTGSGAQTTSLFSLSMGCVTWLERYFTDRNLAQEN FDQAEKAAREVLRPVADKLRFHGWKVCVGASGTVQALQEIMMAQGMDERITLAKLQQLKQ RAIHCGRLEELEIEGLTLERALVFPSGLAILIAIFTELNIQCMTLAGGALREGLVYGMLH LAVDQDIRSRTLRNIQRRFMVDTEQAHRVANLAAKFFDQVANKWHLETISRELLISACQL HEIGLSVDFKQAPQHAAYLVRNLDLPGFTPAQKKLLATLLLNQTNPVDLSSLHQQNAVPP RIAEHLCRLLRLAIIFASRRRDDLVPEIQLDASDEHLTVTLPEGWLEHHPLGKELIDQES EWQSYVHWPLDVH >gi|283548477|gb|GG730300.1| GENE 16 19138 - 20406 1144 422 aa, chain - ## HITS:1 COG:rhlB KEGG:ns NR:ns ## COG: rhlB COG0513 # Protein_GI_number: 16131636 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Escherichia coli K12 # 1 422 1 421 421 839 96.0 0 MSKTHLTEQKFSDFALHPKVIEALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKT MAFLTSTFHYLLSHPAIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR WLFRRMPPTTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILD EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRAGGAPRNRRR SG >gi|283548477|gb|GG730300.1| GENE 17 20538 - 20867 439 109 aa, chain + ## HITS:1 COG:ECs4714 KEGG:ns NR:ns ## COG: ECs4714 COG0526 # Protein_GI_number: 15833968 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Escherichia coli O157:H7 # 1 109 19 127 127 221 100.0 2e-58 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLN IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA >gi|283548477|gb|GG730300.1| GENE 18 21206 - 22465 1358 419 aa, chain + ## HITS:1 COG:STM3917 KEGG:ns NR:ns ## COG: STM3917 COG1158 # Protein_GI_number: 16767192 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Salmonella typhimurium LT2 # 1 419 1 419 419 814 99.0 0 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS >gi|283548477|gb|GG730300.1| GENE 19 22704 - 23807 958 367 aa, chain + ## HITS:1 COG:rfe KEGG:ns NR:ns ## COG: rfe COG0472 # Protein_GI_number: 16131640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Escherichia coli K12 # 1 367 1 367 367 575 92.0 1e-164 MNLLTAGTDLISIFLFTTLFLFFARKVAKKIGLVDKPNFRKRHQGLIPLVGGISVYAGIC FTFLIADYYIPHATLYLACAGVLVFIGALDDRYDISVKIRATIQAIIGIIMMAVGKLYLL SLGYIFGPWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDGLLGGLSSVSFAAMGLILWFD GQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDAGSTLIGFTVIWILLETTQGTTH PISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHLIMRAGFTSRQAFVLITL AAAILASIGVLAEYTHIVPEWVMLVLFLLAFVLYDYCIKRAWKVARFIKRLKRKLRRNRE SKPNLTK >gi|283548477|gb|GG730300.1| GENE 20 23820 - 24866 842 348 aa, chain + ## HITS:1 COG:STM3919 KEGG:ns NR:ns ## COG: STM3919 COG3765 # Protein_GI_number: 16767194 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Chain length determinant protein # Organism: Salmonella typhimurium LT2 # 1 348 1 348 348 616 89.0 1e-176 MAQPLPGEHAVSAENELDIRGLFRTLWKGKVWIVGMALAFAIVALAYTFFARQEWSATAI SDKPTVNMLGGYYSQQQFLRNLDIKASLASADQPSVMDEAYKEFIMQLASWDTRREFWQQ TDYYKQRMVGNSKADAAMLDELIGNIQFMPGDALRNTNDSVKLIAETAPDANNLLRQYVA FASERAARHLNDELKGAWAARTVQMKAQVKRQEEVAKSLFSRRVHSIEQALKIAEQHNIS RTSTDVPADELPDSELFLLGRPMLQARLENLQSVGPDFDLDYFQNRAMLNTLNVGPTLDP RFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGALIGAGVALTRRRAI >gi|283548477|gb|GG730300.1| GENE 21 24967 - 26052 762 361 aa, chain + ## HITS:1 COG:STM3920 KEGG:ns NR:ns ## COG: STM3920 COG0381 # Protein_GI_number: 16767195 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Salmonella typhimurium LT2 # 1 361 16 376 376 690 92.0 0 MAPLVHALAKDPDFEAKVCVTAQHREMLDQVLSLFSIVPDYDLNIMQPGQGLTEITCRIL EGLKPILADFKPDVVLVHGDTTTTIATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANR TLTGHLAMYHFAPTENSRQNLLRENIPDSRIFVTGNTVIDALIWVRDRVLASDALRAELA EHYPFLAADKKMILVTGHRRESFGRGFEQICHALAEIAAANQNVQIVYPVHLNPNVSEPV NRILGHVENVILIEPQDYMPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRETTERPE AITAGTVRLVGTDPQRIVEEVTRLLHDDNEYQTMSRAHNPYGDGQACGRILHALKNNRVS L >gi|283548477|gb|GG730300.1| GENE 22 26049 - 27311 1078 420 aa, chain + ## HITS:1 COG:ECs4720 KEGG:ns NR:ns ## COG: ECs4720 COG0677 # Protein_GI_number: 15833974 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 420 1 420 420 763 88.0 0 MSFTTISVIGLGYIGLPTAAAFASRQKHVIGVDVNQHAVDTINRGEIHIVEPDLGVVVKT AVEKGFLRATTTPVDADAYLIAVPTPFKGEHEPDMVYVEAAAKSLAPVLKKGALVILEST SPVGATEQMAAWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVIGGM TSVCSARASELYNIFLEGECVVTNARTAEMCKLTENSFRDVNIAFANELSLICADQGINV WELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPQQAKLIRTAREVNDGKPHWVV DRVKAAVADCLADTNKRASEVKIACFGLAFKPNIDDLRESPAMGIAQSIAHWHKGEMLVV EPNIHQLPKKLDGICQLATLNDALASADVLVMLVDHNEFKAIKGDAVQQQYIVDTKGVWR >gi|283548477|gb|GG730300.1| GENE 23 27308 - 27985 452 225 aa, chain + ## HITS:1 COG:STM3924 KEGG:ns NR:ns ## COG: STM3924 COG0454 # Protein_GI_number: 16767199 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 44 225 1 182 182 273 78.0 2e-73 MTLRASIEPLSWENTFFGVNSAIIRVDQQAPVLTVDALRPWSRVQAKIPAANTHELDALQ QLGFSLVEGEVDFVLPVACASGNSGAQIAQTADIPALRRLAEQAFAQSRFRAPWYAADAS SRFYAQWIENAVLGTFDHQCLVLRTPIGEIRGYVSLRELNTTEARIGLLAGRGAGAELMQ AALCWAQDRGKTTLRVATQMGNTAALKRYIHSGANVESTAYWLYR >gi|283548477|gb|GG730300.1| GENE 24 27990 - 29120 1263 376 aa, chain + ## HITS:1 COG:wecE KEGG:ns NR:ns ## COG: wecE COG0399 # Protein_GI_number: 16131647 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Escherichia coli K12 # 1 376 1 376 376 754 93.0 0 MIPFNAPPVVGTELDYMQSAMNSGKLCGDGGYTRRCQQWLEQHFGSEKVLLTPSCTASLE MAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITDKT RAIVPVHYAGVACEMDTIMALAAKHNLYVVEDAAQGVMSTYKGRALGTIGHIGCFSFHET KNYTAGGEGGATLINDKKLVERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQA AYLWAQLEAADRINQQRLALWQNYYDALEPLARAGRIDLPSVPEGCVQNAHMFYIKLRDI DDRTALINFLKEAEIMAVFHYIPLHDCPAGDKFGVFAGVDRYTTKESERLLRLPLFYNLS PVNQRTVITTLLNYFA >gi|283548477|gb|GG730300.1| GENE 25 29122 - 30372 1068 416 aa, chain + ## HITS:1 COG:STM3926 KEGG:ns NR:ns ## COG: STM3926 COG2244 # Protein_GI_number: 16767201 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Salmonella typhimurium LT2 # 1 416 1 416 416 656 92.0 0 MSLAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQMVTVLGVLAGAGIFN GVTKYVAQHHDDPARLRKVVGTSSAMVLGFSTLMAAIFLLAAAPISQGLFGHTHYQGLVR LVALVQMGIAWANLLLALMKGFRDAAGNALSLIVGSLVGVAAYYGCYRLGGYEGALLGLA LVPALVVIPAAIMLVKRGAIPLHYLKPSWDNGLAGQLSKFTLMALITSVTLPVAYVMMRN LLAAQYSWDDVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLSEKRDITREVIKSLKFV LPAVAAASFTVWLLRDFAIWLLFSAKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL RFYILAEISQFMLLTAFAHWLIPAHGALGAAQAYMATYIVYFSLCCGVFLLWRRRA >gi|283548477|gb|GG730300.1| GENE 26 30369 - 31448 814 359 aa, chain + ## HITS:1 COG:no KEGG:CKO_00134 NR:ns ## KEGG: CKO_00134 # Name: not_defined # Def: 4-alpha-L-fucosyltransferase # Organism: C.koseri # Pathway: not_defined # 1 357 1 357 359 670 88.0 0 MTVLIHVLGSDIPHHNHTVLRFFNDSLAATSEHARTFMVAGQDAGFSESCPALSLSFYGG KKALAEAVIAKAKADRQQRFFFHGQFNTSLWLALLSGGIKPQQFYWHIWGADLYEVSSGL KFRLFYPIRRMAQNRVGCVFATRGDLRYFSGLHPHVRGELLYFPTRMDPSLNTMSSERQR SGKMTVLVGNSGDRSNEHVAALRAVHQQFGDTVNVIVPMGYPANNTAYIDEVRQAGLALF SADNLQILHEKLEFDAYLALLRQCDLGYFIFARQQGIGTLCLLIQAGIPCVLNRENPFWQ DMAEQNIPVLFTTDQLNEGLVREAQRQLALVDKNTITFFSPNYLQPWHHALSIASGETV >gi|283548477|gb|GG730300.1| GENE 27 31445 - 32800 1247 451 aa, chain + ## HITS:1 COG:no KEGG:CKO_00135 NR:ns ## KEGG: CKO_00135 # Name: not_defined # Def: putative common antigen polymerase # Organism: C.koseri # Pathway: not_defined # 1 450 1 450 450 710 93.0 0 MSLMQFSGLLVVWLLSTLFIATLTWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSILVFR FDVAVAPPEILLQALLSAACFYAVYYVTYKTRLRKRAEDKPRRPLFTINRVEAHLTWIIL MAIALVSVGVFFMHNGFLLFRLQSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQDSK AWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGM FWLALKRYGLNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYHNIEFQGLAPIVRDFYVF IPSWLWPGRPSIVLNSANYFTWEVLNNHSGLAISPTLIGSLVVMGGALFIPLGAIVVGLI IKWFDWLYELGNRETNRYKAAILHSFCFGAIFNMIVLAREGLDSFVSRVVFFLVIFGVCL LAAKLLFWLFDSAGLIHKRIKSLPRTQIEGS >gi|283548477|gb|GG730300.1| GENE 28 32800 - 33540 663 246 aa, chain + ## HITS:1 COG:STM3929 KEGG:ns NR:ns ## COG: STM3929 COG1922 # Protein_GI_number: 16767204 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Salmonella typhimurium LT2 # 1 246 1 246 246 451 89.0 1e-127 MTDNTTAPLYALRGLQLIGWRDMQHALNYLFAEGQLRPGTLVAINAEKMLTAEDNPEVRD LINAAEFKYADGISVVRSVRKKFPQAQVSRVAGADLWEALMARAGQEGTPVFLIGGKPEV LAQTEAKLRAQWRVNIVGSQDGYFTPEQRQALFERIHASGAQIVTVAMGSPKQEIFMRDC RKIHPEALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRITRQLRLLRYLRW HYTGNL >gi|283548477|gb|GG730300.1| GENE 29 33817 - 35202 1327 461 aa, chain + ## HITS:1 COG:STM3930 KEGG:ns NR:ns ## COG: STM3930 COG1113 # Protein_GI_number: 16767205 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Salmonella typhimurium LT2 # 1 461 1 461 461 785 95.0 0 MAENKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIVAGLFVFFIM RSMGEMLFLEPVAGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP EMAQWIPALIAVGLVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGG QAIGFGNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKV LWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCN SGMYSCGRMLYALAKNRQLPAAVGKVSRQGVPVAGVAISIAILLIGSCLNYIIPNPQRVF VYVYSASVLPGMVPWFVILISQLRFRQAHKAAIASHPFRSILFPWANYLTMAFLICVLIG MYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGTAQKLQE >gi|283548477|gb|GG730300.1| GENE 30 36186 - 37385 1404 399 aa, chain - ## HITS:1 COG:ECs4732 KEGG:ns NR:ns ## COG: ECs4732 COG3071 # Protein_GI_number: 15833986 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli O157:H7 # 12 397 12 397 398 696 94.0 0 MLKVLLLFVLLIAGIVVGPMMAGHQGYVLIQTDNYNIETSVTGLVIILIVAMVILFAIEW LLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMSKNADHAEQPVVN YLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEIARVRLQLARNENHAARHSVDKLL EVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHVGDEEHRAMLEQQAWVGLMDQVR ADQGSEGLRAWWKNQNRKTRHQVALQVAMAEHLIECDDHDTAQQVIIDGLKRQYDDRLVL PIPRLKTNNPEQIEKVLRQQIKAVGDRPLLWSTLGQSLMKHGEWQEATLAFRAALKQRPD AYDYAWLADALDRLHQPEEAATMRRDGLMLTLQNNNPSQ >gi|283548477|gb|GG730300.1| GENE 31 37388 - 38563 1218 391 aa, chain - ## HITS:1 COG:hemX KEGG:ns NR:ns ## COG: hemX COG2959 # Protein_GI_number: 16131655 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of heme biosynthesis # Organism: Escherichia coli K12 # 1 391 1 393 393 525 88.0 1e-149 MTEQEKSSAVVEETREAVETTSQPVNTEKKGHNSTALILSAVAIAIALAAGVGLYGWGKQ QATTQTATSDALANQLTALQKAQEAQKAELEGIIKQQATQLDEATRQQAALVKQLDEVQQ KVATISGSDAGTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLITA RRAITDDIASLSAVTQVDYDGIILKVNQLSNQIDNLRLADNDTDDSPMDSDSSELSSSIS EWRVNLQKSWQNFMDSFITIRRRDETAVPLLAPNQDVYLRENIRSRLLVAAQAVPRHQEE TYRQALENVSTWVRAYYDTDDATTKAFLDEVDQLSQQSISMDVPETLQSQAILDKLMQTR VRNLLAQPTTSPVAAAPAPSADTPATAPQGE >gi|283548477|gb|GG730300.1| GENE 32 38585 - 39325 621 246 aa, chain - ## HITS:1 COG:STM3937 KEGG:ns NR:ns ## COG: STM3937 COG1587 # Protein_GI_number: 16767208 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Salmonella typhimurium LT2 # 1 246 1 246 246 412 85.0 1e-115 MSILVTRPSPAGEELVSRLRALGQVAWSFPLIEFSPGQELATLPSRLSALTENDLLFALS QHAVTFADAELHQQGKSWPSLPRYFAIGRTTALALHTVSSFNIHYPQDREISEVLLQLPE LQNIAGKRALILRGNGGRELIGETLTARGADVDFCECYQRSAKNYAGAEEAMRWQSRGVT TLVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAHLARELGWQDIKVADNADNDA LLRALQ >gi|283548477|gb|GG730300.1| GENE 33 39322 - 40263 1039 313 aa, chain - ## HITS:1 COG:STM3938 KEGG:ns NR:ns ## COG: STM3938 COG0181 # Protein_GI_number: 16767209 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Salmonella typhimurium LT2 # 1 313 6 318 318 556 92.0 1e-158 MLDNVLRIATRQSPLALWQAHYVKDALMANHPGLIVELVPMVTRGDVILDTPLAKVGGKG LFVKELEVALLEKRADIAVHSMKDVPVEFPDGLGLVTICEREDPRDAFVSNKYNTLDDLP AGSIVGTSSLRRQCQLAKRRPDLIIRSLRGNVGTRLGKLDNGDYDAIILAVAGLKRLGLE SRVRTALPPEVSLPAVGQGAVGIECRLDDMRTRALLAPLNHEETALRVKAERAMNTRLEG GCQVPIGSYAELINGEIWLRALVGAPDGSQMVCGERRGAVQDAEQMGISLAEELLENGAR AILADVYNGDAPA >gi|283548477|gb|GG730300.1| GENE 34 40498 - 40644 58 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLSVMLSIAAAQALTIIVINSDKPYVKNNRYLFFARIFLRCTAEKMV >gi|283548477|gb|GG730300.1| GENE 35 40658 - 43204 2476 848 aa, chain + ## HITS:1 COG:STM3939 KEGG:ns NR:ns ## COG: STM3939 COG3072 # Protein_GI_number: 16767210 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate cyclase # Organism: Salmonella typhimurium LT2 # 1 848 1 848 848 1755 97.0 0 MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPKG ICFYTPDETQRHYLNELELYRGMSPQEPPKGELPITGVYSMGSTSSVGQSCSSDLDIWVC HQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENRFRHNESGSLGGEDCGSTQHI LLLDEFYRTAVRLAGKRILWNMVPGNEEEHYDDYVMTLYAQGVLTPNEWLDLGGLSSLSA EEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFGLD PYCMMLERVTEYLTAIEDPTRLDLVRRCFYLKVCEKLSRERACVGWRREVLSQLVQEWGW DDARLTMLDNRANWKIDQVREAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDIGVLTR KLYAAFEALPGKVTLVNPQISPDLSEPNLTFIHVPPGRANRSGWYLYNRAPNMDSIISHQ PLEYNRYLNKLVAWAWFNGLLTSRTHLFIKGNGIVDLPKLQEMVADVSHHFPLRLPAPTP KALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGEEQNCLVGSVDLLYRN SWNEVRTLHFNGEQAMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSE CIELRLSSTRQETGRFKALRVSGQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSV QVETNHVKLPSVVDGFASEGIIQFFFEETGDEQGFNIYILDESNRAEVYHHCEGSKEELV RDVSRFYSSSHDRFTYGSSFINFNLPQFYQIVKTDGRAQVIPFRTQPINPVPPANQDNDT PMLQQYFS >gi|283548477|gb|GG730300.1| GENE 36 43282 - 43602 574 106 aa, chain - ## HITS:1 COG:STM3943 KEGG:ns NR:ns ## COG: STM3943 COG1965 # Protein_GI_number: 16767214 # Func_class: P Inorganic ion transport and metabolism # Function: Protein implicated in iron transport, frataxin homolog # Organism: Salmonella typhimurium LT2 # 1 106 1 106 106 192 93.0 9e-50 MNDSEFHRLADTLWMAIEERLDDWDGDSDIDCEINGGVLTISFENGSKIIINRQEPLHQV WLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGEEVSFR >gi|283548477|gb|GG730300.1| GENE 37 43741 - 43944 152 67 aa, chain + ## HITS:1 COG:STM3946 KEGG:ns NR:ns ## COG: STM3946 COG5567 # Protein_GI_number: 16767216 # Func_class: N Cell motility # Function: Predicted small periplasmic lipoprotein # Organism: Salmonella typhimurium LT2 # 1 67 1 67 67 92 80.0 2e-19 MKNVLKPLAVILTLFSLTGCGLKGPLYFPPADKTAPPPTKSVQPQSQSTTPEKNDRGISD GPSQVNY >gi|283548477|gb|GG730300.1| GENE 38 43981 - 44805 899 274 aa, chain + ## HITS:1 COG:ECs4739 KEGG:ns NR:ns ## COG: ECs4739 COG0253 # Protein_GI_number: 15833993 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Escherichia coli O157:H7 # 1 274 2 275 275 560 97.0 1e-160 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE PNFEPSQVPFRANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVDDVDTATVETLGPVLE SHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRV ELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL >gi|283548477|gb|GG730300.1| GENE 39 44838 - 45509 754 223 aa, chain + ## HITS:1 COG:STM3948 KEGG:ns NR:ns ## COG: STM3948 COG3159 # Protein_GI_number: 16767218 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 4 223 16 235 235 374 87.0 1e-104 MELDDRAVVDYLQRNPEFFIRNAQAVEAMRVPHPVRGTVSLVEWHMARARNHINVLEENM ALLMEQANANESLFYRLLNLQSRLVSASSLDDMLMRFHRWARELGLAGATVRLFPDRWRL GAPSKFTHLALSRQAFEPLRIQRLGQSQHYLGPLNGPELLVMMPEAKAIGSVAMSMLGQD GSLGVMLFSSRDVNHYQQGQGTQLLQEISLMLPELLERWIERV >gi|283548477|gb|GG730300.1| GENE 40 45506 - 46408 851 300 aa, chain + ## HITS:1 COG:STM3949 KEGG:ns NR:ns ## COG: STM3949 COG4973 # Protein_GI_number: 16767219 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Salmonella typhimurium LT2 # 1 300 1 300 300 569 96.0 1e-162 MTDSPLSQDVARFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRS FAVRSRRKGLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDD VNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERR LPIGRNAVAWIEHWLDLRGLFGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK >gi|283548477|gb|GG730300.1| GENE 41 46408 - 47124 595 238 aa, chain + ## HITS:1 COG:STM3950 KEGG:ns NR:ns ## COG: STM3950 COG1011 # Protein_GI_number: 16767220 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Salmonella typhimurium LT2 # 1 238 1 238 238 428 86.0 1e-120 MRFYRPLGRISALTFDLDDTLYDNRPVITRTEQEALAFVQNYHPALNSLQNSDLQRLRQA VRDAEPEIYHDVTQWRHRAVERAMLEAGLSAAEALAGANAAMMNFAKWRSRIDVPQSTHD TLKALAHKWPLVAITNGNAQPELFGLGDYFEFVLRAGPDGRSKPFSDMYALAAEKLKMPV GEILHVGDDLTTDVAGAIRCGMQACWIKPENADLMQTADSRLLPHIEISQLASLTSLI >gi|283548477|gb|GG730300.1| GENE 42 47213 - 49375 2541 720 aa, chain + ## HITS:1 COG:STM3951 KEGG:ns NR:ns ## COG: STM3951 COG0210 # Protein_GI_number: 16767221 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 1 720 1 720 720 1410 97.0 0 MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAV TFTNKAAAEMRHRIGQIMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL RLLKRLIKAMNLDEKQWPPRQAMWFINSQKDEGLRPHHLQSYGNPVEQTWQKVYQAYQEA CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTNNILSAANALIENN NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALEQCAILYRSNAQS RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELVDALAQETADMPLHVQ TDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFSYNEEDEDLMPLQAFLSHAAL EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRATVSRPVSHQRMG TPMAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLETV >gi|283548477|gb|GG730300.1| GENE 43 49834 - 50784 1254 316 aa, chain + ## HITS:1 COG:STM3952 KEGG:ns NR:ns ## COG: STM3952 COG0598 # Protein_GI_number: 16767222 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Salmonella typhimurium LT2 # 1 316 1 316 316 564 92.0 1e-161 MLSAFQLENNRLTRLEADEIEHLASSVWVDLVEPDDEERNRVQKDLGQNLATRPELEDIE ASARFFEDEDGLHIHSFFFYEDADDHAGNSTVAFTIREGRLFTLRERELPAFRLYRMRAR NQAMVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGRQGDEYDEALSTLAE QEDIGWKVRLCLMDTQRALNFLVRKARLPGSQLEQAREILRDIESLLPHNESLFQKVNFL MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELHWSFGYPGAIVFMM LAGLAPYLYFKRKNWL >gi|283548477|gb|GG730300.1| GENE 44 50874 - 51767 1060 297 aa, chain - ## HITS:1 COG:STM3955 KEGG:ns NR:ns ## COG: STM3955 COG2962 # Protein_GI_number: 16767225 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Salmonella typhimurium LT2 # 1 293 1 293 294 486 93.0 1e-137 MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSISRQW SGVKTLLQTPKKIFLLALSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMLF LGERFRRMQWLAVLLAACGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGML IETLWLLPVAAIYLFGIADSPTSHMGQNPMSLNLLLIAAGIVTTIPLLCFTGAATRLRLS TLGFFQYIGPTLMFLLAITFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRRVRRS >gi|283548477|gb|GG730300.1| GENE 45 51819 - 52286 467 155 aa, chain - ## HITS:1 COG:ECs4750 KEGG:ns NR:ns ## COG: ECs4750 COG2050 # Protein_GI_number: 15834004 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Escherichia coli O157:H7 # 1 155 7 161 161 290 96.0 9e-79 MSAVLTAEEALKLVGEMFVYHMPFNRALGLELERYEKEFAQLAFNNQPMMVGNWAQSILH GGVIASALDVAAGLVCVGSTLTRHETISEDELRQRMSRMGTIDLRVDYLRPGRGNRFTAT SSLLRAGNKVAVARVELHNEEQLYIASATATYMVG >gi|283548477|gb|GG730300.1| GENE 46 52452 - 53321 898 289 aa, chain + ## HITS:1 COG:ECs4751 KEGG:ns NR:ns ## COG: ECs4751 COG2829 # Protein_GI_number: 15834005 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane phospholipase A # Organism: Escherichia coli O157:H7 # 1 289 1 289 289 538 91.0 1e-153 MRAILGWLLPAVMLPLTAYAQEATVKEIHDAPAVRGSIIANMLQEHDNPFTLYPYDTNYL IYTNTSDMNKEAISSYSWSDNARKDEVKFQLSLAFPLWRGILGPNSVLGGSYTQKSWWQL SNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYT RLMAENGNWLAEVKPWYVIGSTDDNPDITKYMGYYQLKMGYHLGDAVISVKGQYNWNTGY GGAELGASYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDIF >gi|283548477|gb|GG730300.1| GENE 47 53410 - 55239 1957 609 aa, chain + ## HITS:1 COG:STM3958 KEGG:ns NR:ns ## COG: STM3958 COG0514 # Protein_GI_number: 16767228 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Salmonella typhimurium LT2 # 1 609 7 615 615 1198 94.0 0 MAQAEVLNLEMGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRSGQVRLLY IAPERLMLDNFLEHLGHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFVAL TATADETTRLDIVRLLGLNEPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI IYCNSRAKVEDTAARLQSRGISAGAYHAGLENSVRAEVQEKFQRDDLQIVVATVAFGMGI NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIAL STIGRVNQRFGMGYVVEVLRGANNQRIRELGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG LVTQNIAQHSALQMTDAARPVLRGEVPLQLAVPRIVALKPRAMQKSFGGNYDRKLFAKLR KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSPSEMLSVNGVGMRKLERFGKEFMALIR AHVDGDDEE >gi|283548477|gb|GG730300.1| GENE 48 55303 - 55923 764 206 aa, chain + ## HITS:1 COG:STM3959 KEGG:ns NR:ns ## COG: STM3959 COG1280 # Protein_GI_number: 16767229 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Salmonella typhimurium LT2 # 1 206 1 206 206 345 92.0 3e-95 MLTLFFTVALVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGL HLIIEKMAWLHTIIMVGGGLYLCWMGYQMLRGAFKKQEASAPAPQVELAQSGRSFLKGLL TNLANPKAIIYFGSVFSLFVGDSVGAGARWGIFALIIVETLAWFTVVASLFALPKMRRGY QRMAKWIDGFAGALFAGFGIHLIISR >gi|283548477|gb|GG730300.1| GENE 49 55969 - 56589 681 206 aa, chain - ## HITS:1 COG:ECs4754 KEGG:ns NR:ns ## COG: ECs4754 COG1280 # Protein_GI_number: 15834008 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 324 89.0 5e-89 MTFEWWFAYLLTSIILSLSPGSGAINTMTTAISHGYRGASASIAGLQTGLGIHIVLVGVG LGTLFSRSAIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLNTMANTQSRSRLFKRAVFVNL TNPKSIVFLAALFPQFILPREPQLMQYVVLGVTTIVVDIIVMIGYATLATRIAGWIKGPK QMKALNKAFGSLFMLIGALLASARHA >gi|283548477|gb|GG730300.1| GENE 50 56700 - 57716 717 338 aa, chain + ## HITS:1 COG:ECs4755 KEGG:ns NR:ns ## COG: ECs4755 COG2267 # Protein_GI_number: 15834009 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Escherichia coli O157:H7 # 1 336 1 336 340 607 84.0 1e-173 MFQQQKDWETRENAFAAFSMGPLTDFWRQREEAEFTGVDNVPVRFVRFHAEKNDRVIVVC PGRIESYVKYAELAYDLFYSGFDVLIIDHRGQGRSGRMLSDPHRGHVDNFNDYVDDFTAF WQQEVLPGPWRKRYILAHSMGGAIATLFLQRHPNQCDAIALCAPMFGIVMRFPDWMVRQI LDWAEGHPRIREGYAMGTGRWRALPFGMNAVTHSRQRYRRNLRFYADDPQLRVGGPTYHW VREGIQAGEQVLAGAGDDATPTLLIQAEEERLVDNRMHDRFCELRAAAGHPVEGGQPLVI KGAYHEILFEKDAMRSVALNAIVEFFDKHNSSSGTRFA >gi|283548477|gb|GG730300.1| GENE 51 57732 - 58532 985 266 aa, chain + ## HITS:1 COG:STM3962 KEGG:ns NR:ns ## COG: STM3962 COG0561 # Protein_GI_number: 16767232 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 266 1 266 266 518 92.0 1e-147 MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGVNFVFATGRHHVDVGQIRDNLGIKT YMITSNGARVHDSTGNLVFTHNLDRDIASDLFGVVNANPDIVTNVYRDDEWFMNRHRPDE MRFFKEAVFNYSLFEPALLEPEGVSKVFFTTDSHERLLPLEQAINARWGDRVNVSFSTLT CLEVMAGGVSKGHALEAVANAMGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKD LHPELDVIGLNADDAVPHYLRKLFLQ >gi|283548477|gb|GG730300.1| GENE 52 58613 - 59512 989 299 aa, chain + ## HITS:1 COG:ECs4757 KEGG:ns NR:ns ## COG: ECs4757 COG0697 # Protein_GI_number: 15834011 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 299 1 299 299 493 90.0 1e-139 MALLIITTILWAFSFSLFGEYLAGHVDSYFAVLVRVGLAALVFLPFLRTRGHSVKTIALY MLVGAMQLGIMYMLSFHAYLYLTVSELLLFTVLTPLYITLIYDLMSRRRLRWSYAFSALL AVIGAGIIRYDQVTSHFWTGLLLVQLSNISFAIGMVGYKRLMETRPMPQHNAFAWFYMGA FMVAIVAWFMLGNAQKMPATTLQWGILVFLGVAASGIGYFMWNYGATQVDAGTLGIMNNM HVPAGLLVNLAIWHQQPHWPSFIIGAAVIVASLWVHRKWVVPHSVQTAGDRRRDSALSE >gi|283548477|gb|GG730300.1| GENE 53 59400 - 60353 623 317 aa, chain - ## HITS:1 COG:ECs4758 KEGG:ns NR:ns ## COG: ECs4758 COG0583 # Protein_GI_number: 15834012 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 313 1 313 317 573 93.0 1e-163 MIEIKHLKTLQALRNSGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFIRKSQPLRFTP QGEILLQLANQVLPQIGRALQACNEPQQTRLRIAIECHSCIQWLTPALENFRANWPQVEM DFKSGVTFDPQPALQQDELDLVLTSDILPRSGLHYSPMFDFEVRLVLAPDHPLASKTQIT PEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSVDNTLLLIQMVAAKMGIAALPHW VVESFERQGLVVTKTLGDGLWSRLYAAVRDGEQRQPVTEAFIRSARNHACDHLPFVRNAE RPTFDVPTVRPLSQPHQ >gi|283548477|gb|GG730300.1| GENE 54 60589 - 62850 2646 753 aa, chain + ## HITS:1 COG:metE KEGG:ns NR:ns ## COG: metE COG0620 # Protein_GI_number: 16131678 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Escherichia coli K12 # 1 753 1 753 753 1454 94.0 0 MTILNHTLGFPRVGLRRELKKAQESYWAGNSSREDLLTVGRELRARHWDQQKQAGVDLLP VGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRGRAPTGEPAAAAEMTKWFN TNYHYMVPEFTKGQQFKLTWTQLLDEVDEALALGHKVKPVLLGPVTYLWLGKVKGEPFDR LSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQVWLNAFKPAYDALTGQVKLLL TTYFEGVTPNLDTITALPVQGLHVDFVHGKDDVAELHQRLPADWLLSAGLVNGRNVWRAD LSGKYAQIKDIVGKRALWVASSCSLLHSPIDLSVETRLDAEVKSWFAFALQKCGELALLR DALNSGDTAAIVAWSAPIQARRHSTRVHNAAVEKRLAAITAQDSQRANAYPERARAQRAR FNLPAWPTTTIGSFPQTTEIRGLRLDFKKGNLDAGNYRTGIAEHIKQAIVEQERLGLDVL VHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPPVVIGDVSRPEAITVDWAKYA QSLTDKPVKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDE PALREGLPLRRSDWAAYLEWGVEAFRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDAD VITIETSRSDMELLESFEEFDYPNEIGPGVYDIHSPNVPSVEWIEALLKKAGQRIPAERL WVNPDCGLKTRGWPETRAALANMVKAAQNLRQA >gi|283548477|gb|GG730300.1| GENE 55 62947 - 63633 613 228 aa, chain - ## HITS:1 COG:ECs4760 KEGG:ns NR:ns ## COG: ECs4760 COG0412 # Protein_GI_number: 15834014 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Dienelactone hydrolase and related enzymes # Organism: Escherichia coli O157:H7 # 1 228 64 291 293 446 92.0 1e-125 MPAYHARPKQTDGPLPVVIVVQEIFGIHEHIRDVCRRLALEGYLAIAPELYFREGDPNDF ADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDAHRLAITGFCWGGRITWLYAAHNP QLKAAVAWYGKLVGDKTLNAPKHPVDIATDLNAPVLGLYGGQDTSIPQDTVETMRQALRA ANAKAEIVVYPDAGHAFNADYRPSYHEESAKDGWQRMLEWFAQYGGKK >gi|283548477|gb|GG730300.1| GENE 56 64019 - 64780 1014 253 aa, chain + ## HITS:1 COG:STM3968 KEGG:ns NR:ns ## COG: STM3968 COG2820 # Protein_GI_number: 16767238 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Salmonella typhimurium LT2 # 1 253 1 253 253 475 98.0 1e-134 MSKSDVFHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKLASHREFTTWRAELDGK AVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGAS LHFAPMEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTFSGRVVSRF KGSMEEWQSMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQQEIPNAETMKQTESH AVKIVVEAARRLL >gi|283548477|gb|GG730300.1| GENE 57 64936 - 66351 1431 471 aa, chain + ## HITS:1 COG:STM3969 KEGG:ns NR:ns ## COG: STM3969 COG1322 # Protein_GI_number: 16767239 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 469 6 474 476 749 94.0 0 MMSAVLALAAGLLVGWLATKARADQIRADLIEERRELDIALSAARQQLSQEAHWRDECEL LNNELRSLHSINTSLEADLREVTTRLEATQQHAEDKIRQMINSEQRLSEQFENLANRIFE HSNRRVDEQNRQSLNSLLAPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQM AQEAVNLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVI VRLPQGKDVVIDAKMTLVAYERYFNAEDEYTREGALQEHIASVRNHIRLLGRKDYQQLPG LRSLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQ SRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAF RGLGVEIKREINPELAEQATTQDEEYRLRSVPETQQDESYPDDEAVNQQSN >gi|283548477|gb|GG730300.1| GENE 58 66446 - 67201 364 251 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 28 250 1 221 221 144 34 6e-33 MVEDSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSG VRRGQTVLDLAGGTGDLTAKFSRMVGETGKVVLADINDSMLKMGREKLRNIGVVGNVEYV QANAEALPFPDNTFDCITISFGLRNVTDKEKALRSMYRVLKPGGRLLVLEFSKPIIEPLS KAYDAYSFHVLPRIGSMVASDADSYRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTA GVVALHRGYKF >gi|283548477|gb|GG730300.1| GENE 59 67215 - 67820 654 201 aa, chain + ## HITS:1 COG:STM3971 KEGG:ns NR:ns ## COG: STM3971 COG3165 # Protein_GI_number: 16767241 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 201 1 201 201 335 88.0 4e-92 MPLKPLVTAGVENLLNTFLYRSPALKSARTRLQGKVLRVELKGFSTPLVLVFSERQVDVL GAWEGEADCTVITHASVLPKLRDRQQLTTLIRSGELEVQGDIQVVQNFVALADLAEFDPA ELLAPYTGDIVAEGVSKILRGGVKFLSCNIQRQQRYVAEAITEEWRMAPGPLEVAWFAEE TAAVERAVESLAKRLEKLEAK >gi|283548477|gb|GG730300.1| GENE 60 67898 - 69457 1276 519 aa, chain + ## HITS:1 COG:ECs4765 KEGG:ns NR:ns ## COG: ECs4765 COG0661 # Protein_GI_number: 15834019 # Func_class: R General function prediction only # Function: Predicted unusual protein kinase # Organism: Escherichia coli O157:H7 # 1 519 28 546 546 1018 95.0 0 MRITLPLRLWRYSLFWMPNQHKDKPLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIA DQLALLQDRVAPFDGQRAKEQIEEAMGGLPVEEWFDDFEITPLASASIAQVHTARLKSNG KEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLL RESANAIQLRRNFEDSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVATLEKNGTNMKLL AERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAE NFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNL FNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALV RAFKEKAPFWVEKMPEIPELVYDSLRQGKYLQHSVDKIARELHANHVRQGQSRYLLGIGA TLLLSGTFLLVSRPEWGLMPGWLMAGGVIAWLIGWRKMR >gi|283548477|gb|GG730300.1| GENE 61 69536 - 69790 440 84 aa, chain + ## HITS:1 COG:ZtatA KEGG:ns NR:ns ## COG: ZtatA COG1826 # Protein_GI_number: 15804428 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Escherichia coli O157:H7 EDL933 # 1 84 15 103 103 122 83.0 2e-28 MGGISIWQLLIIAIIVVLLFGTKKLGSIGSDLGASIKGFKKAMGDDEPKQDKTSQDADFT AKSITDKQGEVKKEDAKSQDKEQV >gi|283548477|gb|GG730300.1| GENE 62 69794 - 70342 542 182 aa, chain + ## HITS:1 COG:STM3974 KEGG:ns NR:ns ## COG: STM3974 COG1826 # Protein_GI_number: 16767244 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Salmonella typhimurium LT2 # 1 182 1 182 182 235 85.0 3e-62 MFDIGFSELLLVFVIGLIVLGPQRLPVAVKTVAGWVRALRSLATTVQNELTQELKLQEFQ DSLKKVEKASLTNLTPELKASMDELREAAESMKRSYSVHDPEKASDEAHTIHNPVVKEAE AQREGVTPAAAENQASSPEQKPESTGAKTPEPTENTSATLMDAEKKAAAPVVESSPSSSD KP >gi|283548477|gb|GG730300.1| GENE 63 70345 - 71136 741 263 aa, chain + ## HITS:1 COG:STM3975 KEGG:ns NR:ns ## COG: STM3975 COG0805 # Protein_GI_number: 16767245 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Salmonella typhimurium LT2 # 1 259 1 258 259 436 92.0 1e-122 MAVEDTQPLITHLIELRKRLLNCIIAVFVIFLALVYFANDIYHMVAAPLIKQMPQGATMI ATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYI GMAFAYFVVFPLAFGFLANTAPQGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCW MGITTPEDLRKKRPYVVVGAFVIGMLLTPPDVFSQTLLAIPMYCLFEVGVFFSRFYVGKR RTRDEDNEAEEAKEAEATEKTEE >gi|283548477|gb|GG730300.1| GENE 64 71166 - 71960 669 264 aa, chain + ## HITS:1 COG:STM3976 KEGG:ns NR:ns ## COG: STM3976 COG0084 # Protein_GI_number: 16767246 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Salmonella typhimurium LT2 # 5 264 1 260 260 486 87.0 1e-137 MGGCMFDIGVNLTSSQFAKDRDEVMARAFAAGVNGMLLTGTNLHESQQALKLAQHYPHCW STAGVHPHDSSQWQSSTEAEIIALANRSEVVAIGECGLDFNRNFSTPQEQERAFEAQLRI AAELQMPIFMHCRDAHDRFLTLLDPWLDSLPGAVLHCFTGTRQEMQDCVDRGLYIGITGW VCDERRGMELRELLPFIPVERLLIETDAPYLLPRDLTPKPASRRNEPAYLPHILERIAHW RGEDPQWLSATIDANVRTLFEVTF >gi|283548477|gb|GG730300.1| GENE 65 71967 - 72455 364 162 aa, chain - ## HITS:1 COG:STM3977 KEGG:ns NR:ns ## COG: STM3977 COG0250 # Protein_GI_number: 16767247 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Salmonella typhimurium LT2 # 1 162 1 162 162 309 93.0 2e-84 MQSWYLLYCKRGQLQRAQEHLERQAVNCLIPMITLEKMVRGKRTTVSEPLFPNYMFVEFD PEVIHTTTINATRGVSHFVRFGAAPATVPSPVIHQLSIYKPEGIVDPETPHPGDSVIITE GAFEGLQAIFTEPDGEARSMLLLNLLNKEVKQSVKNTGFRKI >gi|283548477|gb|GG730300.1| GENE 66 72622 - 74115 1450 497 aa, chain + ## HITS:1 COG:ECs4771 KEGG:ns NR:ns ## COG: ECs4771 COG0043 # Protein_GI_number: 15834025 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Escherichia coli O157:H7 # 1 497 1 497 497 1009 97.0 0 MDAMKYHDLRDFLTLLEQQGELKRITLEVDPHLEITEIADRTLRAGGPALLFENPKGYSM PVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNM PTKRLRGAPCQQKIYSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYR QQLIGKNKLIMRWLSHRGGALDYQEWRAAHPGERFPVSVALGADPATILGAVTPVPDTLS EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEPGEMAPEGPYGDHTGYYNEVDS FPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEG CSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTR MDPARDTVLVGNTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPEVTAR IDAIWDELAIFNDGKSA >gi|283548477|gb|GG730300.1| GENE 67 74156 - 74857 793 233 aa, chain + ## HITS:1 COG:STM3979 KEGG:ns NR:ns ## COG: STM3979 COG0543 # Protein_GI_number: 16767249 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 233 1 233 233 451 94.0 1e-127 MTTLSCKVTSVEAITDTVYRVRLVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEQGF IELHVGASELNLYAMAVMDRILKDREIKVDIPHGEAWLRDEDERPLILIAGGTGFSYVRS ILLTALARNPNRDIAIYWGGREEKHLYDLSELEALSVNHPNLRVEPVVEQPEEGWRGRTG TVLTAVLQDYGTLAEHDIYIAGRFEMAKIARDLFCNERSAREDRLFGDAFAFI >gi|283548477|gb|GG730300.1| GENE 68 75086 - 76012 287 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 3 298 6 319 319 115 29 5e-24 MRLGLDIGGTKIEAVVIDSAGEIVYRERCATPRQSYGDFFQAVTEMIAQAMQTVNQPLSI GIGVPGAVDSEGLIKNSNILVLNQQAFAQDLERALGMPVPVTNDANCFTLSEAMDGSGQG HSVVFGVILGTGCGGGLCIDNRLIAGPNACAGEWGHNALPRYHESRDGAEAKCYCGQVNC IESFISGSGLERQYMSYTTQQAGVPQIMQRVESGDADACLLWERYCDQLARALASVVNML DPDVIVLGGGVSNIARLYSGLQARVAQYVFGKQCRTPIVQARHGDSSGVRGAAWLGAQQS QRKSMRVQ >gi|283548477|gb|GG730300.1| GENE 69 76009 - 76989 803 326 aa, chain + ## HITS:1 COG:TM1200 KEGG:ns NR:ns ## COG: TM1200 COG1609 # Protein_GI_number: 15643956 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Thermotoga maritima # 3 323 4 332 333 148 33.0 1e-35 MTKPVRIRDIAEACGVSVGAVSRALKGQPGLREDTRLRIISVAKQQGYDFSRLRADKIKR VLFLLHRQHNISRALPFYSQLLLGIEDLCRENGIALSFLSIGPGDAVNDQVMLHQPDALI CAGFFEPELLGLLQQMTLPLVLVDLWVPGLPCVNPDNTQGGYLATQHLIAQGRSRIAFLA STLAHYSIRQREKGYRQALYEAHMLMPPEYEAIAPPLLDTEQSLVDAVNELLRLPKPPDA IFAYNDAAAMVVQRVCAQQGIRIPEDLALVGFDDIDAAAWSHPPLTTIAVDKKQLGREAL RLLLEEKQEENLLLPVQLVVRGSSGK >gi|283548477|gb|GG730300.1| GENE 70 77144 - 78307 1332 387 aa, chain - ## HITS:1 COG:ECs4773 KEGG:ns NR:ns ## COG: ECs4773 COG0183 # Protein_GI_number: 15834027 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli O157:H7 # 1 387 1 387 387 717 96.0 0 MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALPPAALDDIYWGCVQQ TLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEH MGHVPMSHGVDFHPGMSRNVAKAAGMMGLTAEMLSRMHGISREMQDAFAARSHARAWAAT QSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSA LSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSTS DIGLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLM ERKDVQFGLATMCIGLGQGIATVFERV >gi|283548477|gb|GG730300.1| GENE 71 78317 - 80506 2904 729 aa, chain - ## HITS:1 COG:fadB_2 KEGG:ns NR:ns ## COG: fadB_2 COG1250 # Protein_GI_number: 16131692 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Escherichia coli K12 # 307 729 1 423 423 805 94.0 0 MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGHALDVLEKQPNLKGLLLRSN KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLSAVNGYALGGGCEC VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGAEQALK IGLVDGVVKHEKLLDGAMAILRQAIDGSLDWKAKRQPKLEPLKLSKIEAAMSFTIAKGMV AQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTSEARALVGIFLNDQFVK AKAKKLTKNIEAPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLL NKQLERGKIDGLKMAGVISTIHPTLDYSGFERVDVVVEAVVENPKVKKAVLAETEDKVRP DTVLASNTSTIPINELASVLKRPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAW ASQMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKVDKVMEKQFGWPMGPAYL LDVVGIDTAHHAQAVMSAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKP KKEEDAAVDGLLAEVSQPKRDFSDEEIIARMMIPMVNEVVRCLEEGIIASPAEADMALVY GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPAGLRDKARHNEPYYPQVEPA RPVGSLKTA >gi|283548477|gb|GG730300.1| GENE 72 80694 - 82025 1612 443 aa, chain + ## HITS:1 COG:STM3984 KEGG:ns NR:ns ## COG: STM3984 COG0006 # Protein_GI_number: 16767254 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Salmonella typhimurium LT2 # 1 443 1 443 443 898 96.0 0 MESLAALYKNHIVTLQERTRDALERFKLDALLIHSGELVNVFLDDHPYPFKVNPQFKAWV PVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTEEIEIIALPKADGIGSQLP AARGNIGYIGPVPERALQLDIVASNINPKGVIDYLHYYRAYKTDYELACMREAQKMAVNG HRAAEEAFRSGMSEFDINLAYLTATGHRDTDVPYSNIVALNEHASVLHYTKLDHQAPSEI RSFLLDAGAEYNGYAADLTRTWSAKSDNDYAHLVKDVNDEELALIATMKAGTSYVDYHIQ FHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHL AAPSKYPYLRCTRVLQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGI RIEDNVVIHENNIENMTRDLKLA >gi|283548477|gb|GG730300.1| GENE 73 82025 - 82639 600 204 aa, chain + ## HITS:1 COG:STM3985 KEGG:ns NR:ns ## COG: STM3985 COG1739 # Protein_GI_number: 16767255 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 204 1 204 204 367 92.0 1e-102 MDSWLIPAAPVSVVEEIKKSRFITLLAHTDGVEAAKAFVESVKAEHPDARHHCVAWVAGA PNDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGG VNQALRQLTTQRKTPLTEYTLQCEYGQLAGIEALLGQFDGKVIASDYQAFVRLRVALPYA KVDEFSAKLADFSRGSLQLLAIEE >gi|283548477|gb|GG730300.1| GENE 74 82678 - 84129 1666 483 aa, chain + ## HITS:1 COG:STM3986 KEGG:ns NR:ns ## COG: STM3986 COG0168 # Protein_GI_number: 16767256 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Salmonella typhimurium LT2 # 1 483 1 483 483 834 97.0 0 MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKE KGELKSREGFLIVVLFWTVLGSVGALPFIFAESPNLTITDAFFESFSGLTTTGATTLVGL DSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAE TAKTLWLIYVLLTVACALALWFAGMPAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINT IIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQLTLVAVCTLVLWIHNTYGS ALTTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRIL LLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIISMLAIIATGV DDFSAFASVVATLNNLGPGLGVVADNFASMNPVAKWILIANMLFGRLEVFTLLVLFTPTF WRE >gi|283548477|gb|GG730300.1| GENE 75 84141 - 84686 478 181 aa, chain + ## HITS:1 COG:STM3987 KEGG:ns NR:ns ## COG: STM3987 COG4635 # Protein_GI_number: 16767257 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism # Function: Flavodoxin # Organism: Salmonella typhimurium LT2 # 1 181 1 181 181 311 86.0 6e-85 MKTLILFSSRDGQTREIAEYLASELKELGVWTDVVNLHRTAEPDWKNYDSVVIGASIRYG HYHSAFQEFVKKYATRLNAMPSAFYSVNLVARKPEKRTPQTNSYARKFLMSSPWRPDRSA VIAGALLYPRYRWYDRVMIQLIMKMSGGETDTNKEVVYTDWEQVAGFAREIAQLTHKTLP K >gi|283548477|gb|GG730300.1| GENE 76 86876 - 87007 89 43 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|237702461|ref|ZP_04532942.1| ## NR: gi|237702461|ref|ZP_04532942.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] hypothetical protein UTI89_C0222 [Escherichia coli UTI89] hypothetical protein UTI89_C2920 [Escherichia coli UTI89] hypothetical protein UTI89_C3719 [Escherichia coli UTI89] hypothetical protein UTI89_C3809 [Escherichia coli UTI89] hypothetical protein UTI89_C4315 [Escherichia coli UTI89] hypothetical protein UTI89_C4441 [Escherichia coli UTI89] hypothetical protein UTI89_C4567 [Escherichia coli UTI89] conserved hypothetical protein [Escherichia sp. 3_2_53FAA] # 1 43 59 101 101 77 88.0 3e-13 MCIFVYGAITLYRRPFQTVPLTHMLIQALGCSPFARRYWGNLG >gi|283548477|gb|GG730300.1| GENE 77 87871 - 88389 407 172 aa, chain - ## HITS:1 COG:STM3993 KEGG:ns NR:ns ## COG: STM3993 COG1763 # Protein_GI_number: 16767258 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Salmonella typhimurium LT2 # 6 172 1 167 171 263 77.0 8e-71 MAEKIMIPLLAIAAWSGTGKTTLLKKLIPELRARGVRPGLIKHTHHNMDVDKPGKDSYEL RKAGAAQTLVASQQRWALMVETPEEPELDLTYLVSRMDASTLDIVLIEGFKHEPVAKILL FREDCGHRVEELIIDEHVVAVASDVPLAVNVPSLDINNIQQLADFVMQWARR >gi|283548477|gb|GG730300.1| GENE 78 88371 - 88955 367 194 aa, chain - ## HITS:1 COG:STM3994 KEGG:ns NR:ns ## COG: STM3994 COG0746 # Protein_GI_number: 16767259 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Salmonella typhimurium LT2 # 1 193 1 193 194 322 79.0 2e-88 MILDSAITGVVLAGGKARRMGGTDKGLLELDGKPLWRHVADALALQVETVVVNANRHRDI YQQSGLQVIPDSLADFPGPLAGMLSVFLQQAGDWFLFCPCDMPYIPHDLVARLKEQRNAA PIVWVHDGERDHPTIALMHRSLQPLLQDYLQSGERRVMVFMRQAGGHAVDFSDRKDAFVN VNTPEELAKWQKKS >gi|283548477|gb|GG730300.1| GENE 79 89025 - 89294 336 89 aa, chain + ## HITS:1 COG:ECs4781 KEGG:ns NR:ns ## COG: ECs4781 COG3084 # Protein_GI_number: 15834035 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 89 1 89 89 156 96.0 7e-39 MKCKRLNEVIELLQPAWQKEPDLNLMQFLQKLAQESGFDGELADLTDDILIYHLKMRDSA KDAVIPGIQKDYEEDFKTALLRARGVIKE >gi|283548477|gb|GG730300.1| GENE 80 89371 - 90357 860 328 aa, chain + ## HITS:1 COG:STM3996 KEGG:ns NR:ns ## COG: STM3996 COG2334 # Protein_GI_number: 16767261 # Func_class: R General function prediction only # Function: Putative homoserine kinase type II (protein kinase fold) # Organism: Salmonella typhimurium LT2 # 1 328 1 328 328 602 89.0 1e-172 MNDNAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPE RWSVDQIQEEHQFALELVSDEVPVAAPLVLNGQTLLSHQGFHYAIFPSVGGRQFEADNID QMEAVGRYLGRMHQTGCKRTFAFRPTIGLEEYLTEPRKLFEHAQLIPSGQKAAFLKATDA LIAVVTERWHTRFTTLRLHGDCHAGNILWRDGPMFVDLDDARNGPAIQDLWMLLNGDKAE QRMQLETIIEAYEEFSEFDTTEIGLIEPLRAMRLVYYLAWLIRRWADPAFPKNFPWLTGE DYWHRQTATFIEQAKILQDPPLQLTPMY >gi|283548477|gb|GG730300.1| GENE 81 90374 - 90997 707 207 aa, chain + ## HITS:1 COG:STM3997 KEGG:ns NR:ns ## COG: STM3997 COG0526 # Protein_GI_number: 16767262 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 376 94.0 1e-104 MKKIWLALAGMVLAFSASAAQFQDGKQYITLEKPVAGEPQVLEFFSFYCPHCYQFEEVLH VSDNVKKKLPEGTKMTKYHVEFLGPLGKDLTQAWAVAMALGVEDKVTVPLFEAVQKTQTV QSVADIRKVFVDAGIKGEDYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMFVNGKYQVN PQGMDTSNMDIFVQQYADTVKFLVSQK >gi|283548477|gb|GG730300.1| GENE 82 91011 - 91919 677 302 aa, chain - ## HITS:1 COG:STM3998 KEGG:ns NR:ns ## COG: STM3998 COG0204 # Protein_GI_number: 16767263 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Salmonella typhimurium LT2 # 1 302 1 302 302 546 85.0 1e-155 MTRILAAITLLLSIVLTILVTIFCSVPIILAGIIKLLLPVPVVWRKVSVFCNVMMYCWCE GLALLLHLNPRLKWDVEGLEGLSKKNWYLLICNHYSWADIVVLCVLFRKHIPMNKYFLKQ QLAWVPFIGLACWALDMPFMKRYSRGYLLRHPERRGKDVETTRRSCEKFRIHPTTIVNFV EGSRFTHEKREQTRSPYQNLLPPKAAGIAMALNVLGSQFDKLLNVTLCYPENSSRPFYDM LSGKLTRIVVRVNLEPIHEELHGDYVNDKGFKRRFQLWLNTLWSEKDAQLDAIKATNKKA GQ >gi|283548477|gb|GG730300.1| GENE 83 92310 - 95096 2984 928 aa, chain + ## HITS:1 COG:polA_2 KEGG:ns NR:ns ## COG: polA_2 COG0749 # Protein_GI_number: 16131704 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Escherichia coli K12 # 289 928 1 640 640 1152 92.0 0 MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGAPTGAMYGVLNMLRSLILQYQPTHAAV VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKNMAGKLEQNK EVAYLSYQLATIKTDVELELTCEQLEVKQPIADELLGLFKQYEFKRWVADVEAGKWLQAK GAKPAAKPQETIVVEATPEEPATALSYDNYVTILDEATLEEWIAKLKKAPVFAFDTETDS LDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRALALLKPLLEDENAHKVGQN LKYDRGILANYDIELRGIVFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKG KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRV ERNGVKIAPAVLHKHSEELTLRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLK KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYH QAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD KGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLNIP RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAE RAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKI HQLMENETHIDVPLLVEVGSGENWDQAH >gi|283548477|gb|GG730300.1| GENE 84 95432 - 96028 691 198 aa, chain - ## HITS:1 COG:STM4001 KEGG:ns NR:ns ## COG: STM4001 COG0218 # Protein_GI_number: 16767266 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Salmonella typhimurium LT2 # 1 198 13 210 210 363 96.0 1e-100 MSAPDIRHLPSDSGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVVD GKRLVDLPGYGYAEVPEEMKRKWQRALAEYLEKRQSLQGLVVLMDIRHPLKDLDQQMILW AVESNVQVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVEAFSSLKKLGVDKLRQK LDSWFSELAPVEETQDGE >gi|283548477|gb|GG730300.1| GENE 85 96628 - 97143 579 171 aa, chain + ## HITS:1 COG:STM4003 KEGG:ns NR:ns ## COG: STM4003 COG3078 # Protein_GI_number: 16767268 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 2 171 3 171 171 178 84.0 3e-45 MKPTSTPRGKGPAKARRKTREEINQEARDRKRQKKHRGHAAGSRASGSEGASGGGKQNKQ QDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETL SAEDQSWVDAKLDRIDELMQKLGLSYDDEEEEEEEEEEKQEDMMRLLKGGN >gi|283548477|gb|GG730300.1| GENE 86 97332 - 98705 1570 457 aa, chain + ## HITS:1 COG:ECs4789 KEGG:ns NR:ns ## COG: ECs4789 COG0635 # Protein_GI_number: 15834043 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli O157:H7 # 1 457 3 459 459 890 93.0 0 MSEQLIDWDLALIQKYNYSGPRYTSYPTALEFSEDYGAEAFLNAVARYPERPLSLYVHIP FCHKLCYFCGCNKVVTRQQHKADQYLDVLEQEIIHRAPLFAGRHVSQLHWGGGTPTYLNK AQISRLMSLLRGNFNFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR LVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVF NYAHLPTLFAAQRKIKDADLPSAQQKLDILQETISSLTETGYQFIGMDHFARPDDELAIA QRKGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDNYAQNQKELKRYYQQVDEQGNALWRG IALTRDDCIRRDVIKLLICNFRLDYAAVEQQWDLNFADYFAEDLKLLAPLAKDGLVDVDE KGIQVTPKGRLLIRNICMCFDAYLRQKARMQQFSRVI >gi|283548477|gb|GG730300.1| GENE 87 98795 - 98905 64 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLESIINLLSSGAVESHTPQTAVAAVLCAALVGLFS >gi|283548477|gb|GG730300.1| GENE 88 99018 - 100427 1335 469 aa, chain - ## HITS:1 COG:ZglnG KEGG:ns NR:ns ## COG: ZglnG COG2204 # Protein_GI_number: 15804453 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli O157:H7 EDL933 # 1 469 1 469 469 884 95.0 0 MQRGIVWVVDDDSSIRWVLERALAGAGLSCTAFESGKEVLDALASKTPDVLLSDIRMPGM DGLTLLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS HYQEQQQPRNVQIHGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA LHRHSPRVKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHR LNVIRVHLPPLRERREDIPRLARHFLQEAARELGVEAKLLHPETEAALTRLAWPGNVRQL ENTCRWLTVMAAGQEVLIQDLPAELFETTVPDAPSPMQPDSWATLLAQWADRALRSGHQN LLSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME >gi|283548477|gb|GG730300.1| GENE 89 100439 - 101488 1229 349 aa, chain - ## HITS:1 COG:STM4006 KEGG:ns NR:ns ## COG: STM4006 COG3852 # Protein_GI_number: 16767271 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, nitrogen specific # Organism: Salmonella typhimurium LT2 # 1 349 1 349 349 619 92.0 1e-177 MATGTLPDAGQILNSLINSILLVDDELAVHYANPAAQQLLAQSSRKLFGTPLPDLLSYFS LNIGLMRESLESGQGFTDNEVTLVIDSHSHILSVTAQRLPDGLILLEMAPMDNQRRLSQE QLQHAQQIAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRN LVDRLLGPQQPGMHVTESIHKVAERVVALVSMEVPENVTLIRDYDPSLPELLHDPDQIEQ VLLNIVRNALQALGPEGGEIVLRTRTAFQLTLHGERYRLAARIDVEDNGPGIPSHLQDTL FYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK >gi|283548477|gb|GG730300.1| GENE 90 101761 - 103170 1836 469 aa, chain - ## HITS:1 COG:STM4007 KEGG:ns NR:ns ## COG: STM4007 COG0174 # Protein_GI_number: 16767272 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Salmonella typhimurium LT2 # 1 469 1 469 469 937 96.0 0 MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG INESDMVLMPDASTALIDPFFEESTLIIRCDILEPGTLQGYDRDPRSIAKRAEEYLRSTG IADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY FPVPPVDSSQDIRSTMCLIMEEMGLVVEAHHHEVATAGQNEIATRFNTMTKKADEIQIYK YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFSGDKYAGLSEQALFYIG GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVR FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALK ELDLDREFLTAGGVFTNEAIDAYIALRREEDDRVRMTPHPVEFELYYSV >gi|283548477|gb|GG730300.1| GENE 91 103377 - 103598 84 73 aa, chain - ## HITS:1 COG:no KEGG:SSPA3579 NR:ns ## KEGG: SSPA3579 # Name: not_defined # Def: cytoplasmic protein # Organism: S.enterica_Paratyphi_AKU12601 # Pathway: not_defined # 23 69 16 60 141 84 80.0 2e-15 MVYVRDDGDVTQIFDHNFASGILEIARYCTRINRSTKQDHKHPPQTSIAEFLCDHIHGAL KGVIWGALHQYGA >gi|283548477|gb|GG730300.1| GENE 92 103551 - 105374 2178 607 aa, chain + ## HITS:1 COG:STM4009 KEGG:ns NR:ns ## COG: STM4009 COG1217 # Protein_GI_number: 16767274 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Salmonella typhimurium LT2 # 1 607 1 607 607 1169 96.0 0 MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQERVMDSNDLEKERGITILAKN TAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAMDGPMPQTRFVTKKAFAHG LKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMA EDMTPLYQTIVDRVPAPNVDLDGPLQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQITII DSEGKTRNGKVGKVLTHLGLERIESTVAEAGDIIAITGLGELNISDTICDPQNVEALPAL SVDEPTVTMFFCVNTSPFCGKEGKYVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG RGELHLSVLIENMRREGFEMAVSRPKVIFREIDGRKQEPFENVTLDVEEQHQGSVMQALG ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRAGDV GQRQNGVLISNGQGKAVAFALFSLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG KKLTNMRASGTDEATVLVPPVKMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRA MRGTKEE >gi|283548477|gb|GG730300.1| GENE 93 105586 - 106296 571 236 aa, chain + ## HITS:1 COG:ECs4794 KEGG:ns NR:ns ## COG: ECs4794 COG2188 # Protein_GI_number: 15834048 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 236 1 236 236 413 84.0 1e-115 MTNNQSTVENAKEKLDRWLKEGITTPGGKLPSERELGELLGIKRMTLRQALLNLESESRI FRKDRKGWFVTQARFNYSPELSASFQRAAIEQGREPSWGFIEKSRVLHYPDVAAPLVSAT PSDELYRITGWGALEGHKVFYHETYINPKVAPGFIEQLESQSFSSVWENAYKKETVIKKL AFRPVRMAGDISKFIGGSSGMPAILIEKHRADNDGNIVQIDIEYWRFEAVDLFINL >gi|283548477|gb|GG730300.1| GENE 94 106305 - 107285 731 326 aa, chain + ## HITS:1 COG:no KEGG:ECP_4084 NR:ns ## KEGG: ECP_4084 # Name: not_defined # Def: xylose isomerase-like TIM barrel; region: AP_endonuc_2; pfam01261 # Organism: E.coli_536 # Pathway: not_defined # 1 324 1 324 326 513 79.0 1e-144 MVTKDNVHKILARVDNLPLYLHAYAYHLNMRLERILPNDLLEIAHENNLRGVKIHVLDGE RYSLENMNDEELSAFGDKARKLQLDIHIETSSSDNKAIDQAVSIALKTGASSVRFYPRYE GNLQEVLAIITQDIKYLRERYQDSGLTFTLEQHEDLKSHELVSLIRNSDMASLSLLFDFA NMINANEHPLTALDTMSPHITQVHIKDALIVNEKAGLGHKACTSGQGDMPFKALLTKLIC LGDDKPQVTAYGLEEEVDYYAPAFRFENEGDNPWIPWRQMSETPLPEAEYLEDRLIKEKK DAIQQLQFVRSVLQQIKNEAHDILAS >gi|283548477|gb|GG730300.1| GENE 95 107328 - 108650 1147 440 aa, chain + ## HITS:1 COG:ECs4796 KEGG:ns NR:ns ## COG: ECs4796 COG0477 # Protein_GI_number: 15834050 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 20 440 1 421 421 735 91.0 0 MVKNLFFKTNDLNNHLGDAMLTKKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLT NGQIGNAMSVNSFVTTVGFFLSIYFADKLPRKYTMSFSLIATGLLGIYLTTMPGYWGILF VWALFGVTCDMMNWPVLLKSVSRLGNSEQQGRLFGFFETGRGIVDTVVAFSALAVFTWFG SGLLGFKAGIWFYAAIVILVGIIIFFVLNDKEEAPAVKIQDAEDTPKNPGMTSVLKDKTI WLIAFNVFFVYAVYCGLTFFIPFLKNIYMLPVALVGAYGIINQYCLKMVGGPIGGMISDK ILKSPSKYLCYTFMVSTVALVLLMVLPHESMPVYLGMACTLGFGAIVFTQRAVFFAPIGE AKIAENQTGAAMALGSFIGYAPAMFCFSLYGYILDLNPGLLGYKIVFGIMACFAFCGAIV SVLLVKRISQRKKMLETAEA >gi|283548477|gb|GG730300.1| GENE 96 108710 - 109402 595 230 aa, chain - ## HITS:1 COG:no KEGG:ECO103_4296 NR:ns ## KEGG: ECO103_4296 # Name: ompL # Def: outer membrane porin L # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 230 1 230 230 408 90.0 1e-112 MKKLTAIIVLSSVASTSVFAGAYVENREAYNLASDQIEVMMRVGYNSDMGAGIMLTNTYT MQRKDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSTGSGGAAYLDVNYKFTPWFNL TVRNRYNHNNYSSTDLNGNLDNNDTYEIGNYWNFTITDKFSYTFEPHYFIRVNDFNSSNG KDHHWEITNTFKYRINEHWLPYLELRWLDRNVEPYHREQNQIRVGAKYFF >gi|283548477|gb|GG730300.1| GENE 97 109469 - 110890 1312 473 aa, chain - ## HITS:1 COG:STM4017 KEGG:ns NR:ns ## COG: STM4017 COG2211 # Protein_GI_number: 16767282 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 1 471 1 471 473 838 91.0 0 MSFHDPLTLKLSLREKVSYGVGDFGSNLMLCIGTLYLLKFYTDELGMPAYYGGIIFLVAK FFTAFTDMLTGVLLDSRRNIGAKGKFRPFILYASFPVAVVASAQFLATDFTLTVKTGLAT VLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQGGATIGLLLCTVGFMPIQALF VSSPSLGYLIAALIFAVCGLFSMWWCFSGVKERYIEIVPDHHKPSILKSFCAIFRNPPLL VLCIANLCTLAAFNIKLAIQVYYTQYVLNDIHLLSWMGFFSMGCILVGVLLVPAAVKRFG KKQVYLGGLALWAVGDVLNFFWGSTSFLFVTFSCMAFFGTAFVNSLNWALVPDTVDYGEW KTGIRAEGSVYTGYTFSRKISAALAGFLPGIMLTQIGYIPNIAQSDATLLGLRQLIFLWP CGLAIIAALTMGFFYKLNEARFAFIIEEISQRKKINIQPDPVTNKKNTSAVKA >gi|283548477|gb|GG730300.1| GENE 98 110937 - 112319 1560 460 aa, chain - ## HITS:1 COG:STM4018 KEGG:ns NR:ns ## COG: STM4018 COG2211 # Protein_GI_number: 16767283 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 1 460 1 460 460 850 96.0 0 MSQTSSNPATLRLPFKEKLAYGMGDLGSNILLDIGTLYLLKFYTDVLGLPGTYGGIIFLI AKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFVLYAAFPVTLLAIANFVGTPFEVTGKTVM ATVLFMLYGLFFSMMNCSYGAMVPAITKNPDERASLAAWRQGGATLGLLLCTVGFVPVMN LIEGNSQLAYIFAATLFSLFGLLFMWLCYAGVKERYVEVKPVDAAQKPGLLQSFRAIAGN RPLFILCVANLCTLGAFNVKLAIQVYYTQYVLNDPILLSWMGFFSMGCIFIGVFLMPGMV RRFGKKKVYIGGLLIWVAGDLLNYFFGGGSVSFVAFSCLAFFGSAFVNSLNWALVSDTVE YGEWRTGVRSEGTVYTGFTFFRKVSQALAGFFPGWMLTQIGYVPNVVQSASTVEGLRQLI FIYPCALAVITIVAMGCFYNLNEKMYVRIVEEIEARKQPV >gi|283548477|gb|GG730300.1| GENE 99 112365 - 114401 2235 678 aa, chain - ## HITS:1 COG:STM4019 KEGG:ns NR:ns ## COG: STM4019 COG1501 # Protein_GI_number: 16767284 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Salmonella typhimurium LT2 # 1 678 1 678 678 1292 91.0 0 MNSLQKRSTALELNALQDGFTLTYHQRPILRHSAEAPCLWIGAGVADIDMFRGNFSIKDK LNEKIALTDATVSESPDGWRVDFSRGNTINATLHISTDEQGRLKLDLHNEECSHNRIWLR LAANPDDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKNSYVTWQADCKENAGGDYYWT FFPQPTFVSTQKYYCHVENSCYMNFDFSAPEYHELALWEDKTTLRIECADTFISLLEKLT ALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGK RVMWNWKWNSDNYPQLDSRIQQWKEEGVQFLSYINPYVASDKDLCAEAAAHGYLAKDASG ADYLVEFGEFYGGVVDLTNPKAYAWFKEVIKKNMIELGCGGWMADFGEYLPTDTYLHNGV SAEIMHNAWPALWAKCNYEALQETGKLGESLFFMRAGYTGSQKYSTMMWAGDQNVDWSLD DGLASVVPAALSLAMTGHGLHHSDIGGYTTLFDMKRSKELLLRWCDFSAFTPMMRTHEGN RPGDNWQFDGDDETIAHFARMTTVFTTLKPYLKQAVAQNSATGLPVMRPLFLHYEDDART YTLKYQYLLGQDLLVAPVHEQGQRDWTLYLPEDSWVSVWTGETYLGGEITVDAPIGKPPV FYRAKSEWAPLFATLRNI >gi|283548477|gb|GG730300.1| GENE 100 114439 - 115281 472 280 aa, chain - ## HITS:1 COG:STM4020 KEGG:ns NR:ns ## COG: STM4020 COG2017 # Protein_GI_number: 16767285 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 280 6 285 285 441 75.0 1e-124 MHSGGKTLHLQAGPYQAKVVTVGAGLAELTHRGRHVVIPHKPEEMPLAHLGKVLIPWPNR VADGCYQHNGKRLQLAVNDPVSHTAIHGLLAWRDWQINQLSNTEASLTIFLPPSYGYPFA LLSEVIYRLEATSGLHVFIRTRNVGDETAPYGAGAHPYLTCNLQHIDDCELTLPASDVTH GEWNFTTPRFIAQTTLDHTFRTLQSDAEWEVRLTCPTQKMSTYLRSHQPWLQVYTGEKLA RRGLAVEPMTCPPDAFNSGVSLIHLAPGEAHQMHFLIGSE >gi|283548477|gb|GG730300.1| GENE 101 115300 - 116541 1557 413 aa, chain - ## HITS:1 COG:STM4021 KEGG:ns NR:ns ## COG: STM4021 COG2942 # Protein_GI_number: 16767286 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Salmonella typhimurium LT2 # 1 413 1 413 413 782 93.0 0 MKWFNTLSHNRWLEQETDRIFNFGKNAAVPTGFGWLGNSGQVRADMGTHLWITARMLHVY SVAASMGRPGAYQLVDHGIKALNGALRDTRYGGWYACVNDEGVMDASKQGYQHFFVLLGA ASAVTTGHPQARKLLDDAIEVIEKYFWSEDEQMCLESWDEAFSQTEDYRGGNANMHAVEA FLIVYDVTQDRKWLDRALRIASVIIHDVARSGAYRVNEHFDSQWNPIRDYNKDNPAHRFR AYGGTPGHWIEWGRLMLHLHAALEARGETPPAWLLEDAKGLFHATIRDAWAPDGADGFVY SVDWDGKPIVRERVRWPIVEAMGTAYALYTLTGDSQYEAWYQKWWDYCITYLMDYETGSW WQELDTDNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINAK >gi|283548477|gb|GG730300.1| GENE 102 116554 - 117429 1105 291 aa, chain - ## HITS:1 COG:STM4022 KEGG:ns NR:ns ## COG: STM4022 COG3684 # Protein_GI_number: 16767287 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Salmonella typhimurium LT2 # 1 291 1 291 292 516 90.0 1e-146 MTKYTLKDITRASGGFAMLAVDQREAMRLMFAAAGATSPVADSVLTDFKVNAAKILSPYA SAILVDQQFCYRQVVEQNAVAKSCAMIVAADEFIPGNGIPVDSVVIDKKINPQAVKQDGA KALKLLVLWRSDEDAQQRLDMVKEFNALCHSNGLLSIIEPVVRPPRRGDKFDREQAIIDA AKELGDSGADLYKVEMPLYGKGTQQELFCASQRLNENINMPWVILSSGVDEKLFPRAVRV AMTAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGDIVDEMMARR >gi|283548477|gb|GG730300.1| GENE 103 117449 - 118339 850 296 aa, chain - ## HITS:1 COG:STM4023 KEGG:ns NR:ns ## COG: STM4023 COG2084 # Protein_GI_number: 16767288 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 292 1 292 298 496 89.0 1e-140 MAVIAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVEKGAQPAISPAQAATGAEF IITMLPNGSLVRSVLFGEQGICESLSPQALVIDMSTIHPLETDKLIADMRAKGFDMMDCP VGRTSDHAVAGTLLLLAGGTPAQVERATPVLMAMGNELINAGGPGMGIRVKLINNYMSIA LNALSAEAAVLCEALGLSFDVALKVMSGTPAGKGHFTTSWPNKVLKGDLSPAFMIDLAHK DLGIALDVANLLHVPMPLGAASREVYNQARAAGRGREDWTAILEQVRASAGLNHQF >gi|283548477|gb|GG730300.1| GENE 104 118506 - 119402 586 298 aa, chain + ## HITS:1 COG:STM4024 KEGG:ns NR:ns ## COG: STM4024 COG0524 # Protein_GI_number: 16767289 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 1 298 1 298 298 502 86.0 1e-142 MIRIACVGIAVMDRIYYVEELPTEGGKYVAKRYTEVGGGPAATAAVAAAKLGAQVDFIGR VGDDDTGNSLLAELESLGVNTRYTRRYAGAQSSQSAIMVDAQGERIIVNYPSPDLLPDAD WLNAIDFSQWDVVLADVRWHEGTKQAFTLARQAGVMTVLDGDVTPQDISELVALSDHAAF SAPGLARMTGINDPQEGLKQAKTLTNGHVYVTRGSEGCDWIKNNTLQHQAGFTVDVVDTT GAGDVFHGALAFSLAGGNAPEDAVRFASGVAALKCTRPGGRAGIPDCDQTRSFLSLFV >gi|283548477|gb|GG730300.1| GENE 105 119436 - 120239 740 267 aa, chain + ## HITS:1 COG:STM4025 KEGG:ns NR:ns ## COG: STM4025 COG1349 # Protein_GI_number: 16767290 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 266 1 266 267 479 94.0 1e-135 MSLTELTGNPRHDQLLMLISERGYMNIDELASLLDVSTQTVRRDIRKLSEQGLITRHHGG AGRASSVVNTAFEQREVSWTEEKKAIAEAVADYIPDGSTVFITIGTTVEQVARALLNHNH LRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPSATAFVADFRADYLVTSVGAI ESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYTASAAVEIGNVSQVTALFTDEYPG PALHNLLQSQQIEIVQVSPSQDDALAV >gi|283548477|gb|GG730300.1| GENE 106 120344 - 120943 657 199 aa, chain + ## HITS:1 COG:ECs4808 KEGG:ns NR:ns ## COG: ECs4808 COG1011 # Protein_GI_number: 15834062 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1 199 8 206 206 385 91.0 1e-107 MLYIFDLGNVIVDIDFNRVLGTWSDLSRVPLASLKQSFSMGEAFHQHERGEITDEAFAEA LCHEMALPLSYEQFSHGWQAVFVALRPEVIDIMHKLREQGHRVVVLSNTNRLHTTFWPDE YPEIRQAADHIYLSQDLGMRKPEARIYQHVLQSEGFSAHDAVFFDDNADNIEGANQLGIT SIQVIDKTTIPDYFAKLLC >gi|283548477|gb|GG730300.1| GENE 107 120937 - 121809 690 290 aa, chain + ## HITS:1 COG:STM4027 KEGG:ns NR:ns ## COG: STM4027 COG1295 # Protein_GI_number: 16767292 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 290 1 290 290 507 94.0 1e-143 MLKNVQQHARHHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFALFAA FPMFSDVSIQLRHFIFANFIPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYAI DNALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNI LRIFPLVLSWLSFWLLYSIVPTTRVPNRDAVIGAFVAAVLFEAGKKGFALYITMFPSYQL IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYRKLKQAAEQEEAEQP >gi|283548477|gb|GG730300.1| GENE 108 121806 - 122243 390 145 aa, chain + ## HITS:1 COG:ECs4810 KEGG:ns NR:ns ## COG: ECs4810 COG1490 # Protein_GI_number: 15834064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Escherichia coli O157:H7 # 1 145 1 145 145 268 95.0 2e-72 MIALIQRVTRASVTVEGEVTGEIGPGLLVLLGVERDDDEQKANRLCERVLGYRIFSDAEG KMNLNVQQSGGSVLVVSQFTLAADTERGMRPGFSKGAAPDRAEALYEYFVERCRQQEMNT QTGRFAADMQVSLVNDGPVTFWLQV >gi|283548477|gb|GG730300.1| GENE 109 122288 - 123229 898 313 aa, chain + ## HITS:1 COG:ECs4811 KEGG:ns NR:ns ## COG: ECs4811 COG0454 # Protein_GI_number: 15834065 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 1 313 17 329 329 596 93.0 1e-170 MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEEGNLVAVGR LYINADNEASIRFMAVDPSVQEKGLGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKL GFVSQGEITTPQTTPVRHFLMIKPIATLDDILHRGDWCGQLQQAWYEHIPLSEKMGVRIQ QYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHI RYSRPITGKPTAIADLGSLSGDLDRLARGRKARVKMQVEVFGDDSPGVVFEGTYIVLPAK PFGAYEEGGNEEE >gi|283548477|gb|GG730300.1| GENE 110 123235 - 123522 137 95 aa, chain - ## HITS:1 COG:ECs0462 KEGG:ns NR:ns ## COG: ECs0462 COG3668 # Protein_GI_number: 15829716 # Func_class: R General function prediction only # Function: Plasmid stabilization system protein # Organism: Escherichia coli O157:H7 # 1 94 1 93 93 65 41.0 2e-11 MYKLSNRAVEDFESIYEYTWRKFGYQQADKYTAEMEQLFLLLEKNPLMGRNNSEIKEYTR QYNHRQHAIFYQNADYGIFIIRILHQQMNSMLHFS >gi|283548477|gb|GG730300.1| GENE 111 123515 - 123757 250 80 aa, chain - ## HITS:1 COG:ECs0461 KEGG:ns NR:ns ## COG: ECs0461 COG3609 # Protein_GI_number: 15829715 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 80 1 80 80 73 51.0 1e-13 MPRTTSITIGDHLDRFINEMIESGRYGSTSEVVRSALRLLEEQELRNNALRDALEDGIHS GTSDLTLQEVALRKKRSLNV >gi|283548477|gb|GG730300.1| GENE 112 123822 - 124730 804 302 aa, chain - ## HITS:1 COG:STM4032 KEGG:ns NR:ns ## COG: STM4032 COG0657 # Protein_GI_number: 16767297 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Salmonella typhimurium LT2 # 1 300 1 300 309 556 89.0 1e-158 MALESGIAQLVEEFIAAGRPSSREQNIDDRRAGYIASTALAGKIETRVQVEDIELDTMTF RVVSPRDAMGKLPCVIYYHGGCFVSGGFATHDNQLRQLAFYSGCRVIAVQYRLAPEHTFP AAHKDAETGANIIWKHAQKLGVDRENITLAGDSAGGHLALVTALRLKAARQWQPAQLMLI YPMLDATARFKSYARNGQDYIITRDTLLSGYEMYLPQTDLLHPEASPLWRKDFNGLPPTH IITAEFDPLRDEDEALYQRFQEQGVQCTCQRYLGVIHGFFQLGGVSQAARSAMRDVAWRV GQ >gi|283548477|gb|GG730300.1| GENE 113 124935 - 125177 248 80 aa, chain + ## HITS:1 COG:no KEGG:SPAB_04994 NR:ns ## KEGG: SPAB_04994 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 80 3 82 82 127 98.0 2e-28 MMAGMDMGRILLDLSDDVIKRLDDLKVQRNLPRAELLREAVEQYLERQDRAETTISRALG LWQGCEEDGVEYQRKLREEW >gi|283548477|gb|GG730300.1| GENE 114 125177 - 125551 207 124 aa, chain + ## HITS:1 COG:no KEGG:SPAB_04995 NR:ns ## KEGG: SPAB_04995 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 124 1 124 124 209 83.0 2e-53 MVKGSALFDTNILIDLFSGRSEAKLAIETWPPQNAISLITWMEVMVGAKKYNQEARTRVA LSAFNVIGVSQDIAERSVSIRQEHGMKLPDAIILATAQIHRLTLVTRNTKDFADISGVVT PYTL >gi|283548477|gb|GG730300.1| GENE 115 125588 - 126517 1083 309 aa, chain - ## HITS:1 COG:STM4034 KEGG:ns NR:ns ## COG: STM4034 COG3058 # Protein_GI_number: 16767299 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in formate dehydrogenase formation # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 600 96.0 1e-172 MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALI AHAQEVVLYDHPLQMDLTARIKEANDQGKPPLDIHVLPRDKHWQKLLQSLIAELKPEMSG PALAVIENLEKASEQELELMASALFASDFASVSSDKAPFIWAALSLYWAQMASLIPGKAR AEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSRDLNY WSLDNEQAAIKAESCGDCGTYLKILYQEKDPKVEAVADDLASLMLDAHMEQEGFARSSIN PFLFPGEGE >gi|283548477|gb|GG730300.1| GENE 116 126514 - 127149 520 211 aa, chain - ## HITS:1 COG:ECs4818 KEGG:ns NR:ns ## COG: ECs4818 COG2864 # Protein_GI_number: 15834072 # Func_class: C Energy production and conversion # Function: Cytochrome b subunit of formate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 211 1 211 211 383 97.0 1e-106 MKRRDTIVRYTAPERINHWVTAFCFILAAVSGMGFLFPSFNWLMHIMGTPQLARIVHPFV GVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAII FLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKGTITA MVEGWVTSSWAKKHHPRWYREVRKTTEKKTE >gi|283548477|gb|GG730300.1| GENE 117 127146 - 128048 896 300 aa, chain - ## HITS:1 COG:fdoH KEGG:ns NR:ns ## COG: fdoH COG0437 # Protein_GI_number: 16131733 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli K12 # 1 300 1 300 300 605 95.0 1e-173 MAYQSQDIIRRSATNGFTPAPQARDHQEEVAKLIDVTTCIGCKACQVACSEWNDIRDEVG NNVGVYDNPADLTAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCADPGCLKACPAEGAIIQ YANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCP TGAIHFGTKESMKTLAGERVAELKTRGYENAGLYDPAGVGGTHVMYVLHHADKPNLYHGL PENPEISATVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRAEEEEDNLHEEKDEVRK >gi|283548477|gb|GG730300.1| GENE 118 128061 - 130475 2926 804 aa, chain - ## HITS:1 COG:STM4037 KEGG:ns NR:ns ## COG: STM4037 COG0243 # Protein_GI_number: 16767302 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 804 213 1016 1016 1618 95.0 0 MTNHWVDIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADFY APIRSGTDIAFLSGVMLYLLNNEKFNREYTEAYTNASLIVREDFGFEDGLFTGYDADKRK YDKTSWNYELDENGFAKRDVTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKADFLKVCE YIAETSAKDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQ GLTDLGLLSQSLPGYMTLPSEKQTDLQTYLAANTPKPLLEGQVNYWGNYPKFFVSMMKAF FGDKATAENSWGFDWLPKWDKGYDVLQYFEMMNQGKVNGYICQGFNPVASFPNKNKVVAS LSKLKYLITIDPLNTETSTFWQNHGESNDVDPSKIQTEVFRLPSTCFAEENGSIVNSGRW LQWHWKGADAPGIAVTDGEILAGIFLRLRKMYTEQGGANPEQVLNMTWNYSTPHEPASEE VAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSSGCWIFTGSWTPEGNQMA RRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQIMKWDGAKWSGMDIP DYSAAAPGSDVGPFIMQPEGMGRLFAIDKMAEGPFPEHYEPFETPLGTNPLHPNVISNPA ARIFKGDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAIAQPEQFVEIGEKLANKLG ISHGDTVKVSSNRGYIKAKAVVTKRIRTLQANGKDIDTIGIPIHWGYEGVAKKGFIANTL TPFVGDANTQTPEFKSFLVNVEKV >gi|283548477|gb|GG730300.1| GENE 119 130524 - 131111 375 195 aa, chain - ## HITS:1 COG:ECs4820 KEGG:ns NR:ns ## COG: ECs4820 COG0243 # Protein_GI_number: 15834074 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli O157:H7 # 1 195 1 195 1016 408 98.0 1e-114 MQVSRRQFFKICAGGMAGTTAAALGFAPGVALAETRQYKLLRTRETRNTCTYCSVGCGLL MYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKFPEYRAPGSDK WQQISWDEAFDRIAKLMKEDRDANYVAQNAEGVTVNRWLSTGMLCASASSNETGYLTQKF SRALGMLAVDNQARV >gi|283548477|gb|GG730300.1| GENE 120 131366 - 132142 605 258 aa, chain + ## HITS:1 COG:fdhD KEGG:ns NR:ns ## COG: fdhD COG1526 # Protein_GI_number: 16131735 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Escherichia coli K12 # 1 255 21 275 277 480 89.0 1e-135 MTLWKREDLQHPQPDEVAEEVPVALVYNGISHVVMMASPKDLEHFAMGFSLSEGIIASPQ DIYGMDVVPSCNGLEVQVELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLA FIQTFDLANLDNALRHLHDYQPVGQLTGCTHAAAWVQPAGHLAGGHEDVGRHVALDKLLG RRALEGEAWQQGAVLVSSRASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGF CKPGRATIYTHPQRLIAR >gi|283548477|gb|GG730300.1| GENE 121 132109 - 132615 201 168 aa, chain - ## HITS:1 COG:no KEGG:SO_1587 NR:ns ## KEGG: SO_1587 # Name: not_defined # Def: hypothetical protein # Organism: S.oneidensis # Pathway: not_defined # 1 159 1 159 168 110 42.0 3e-23 MNAFLLSQILAGISFLLDISAFHFQRRAITLSLLTSSTSLLAIHFSLLDQDAAAGLMIIA ACRYAIAIVTFHRWAMWGFMLGSLMCSVYLWQNLLSILPLMGSLLMTFASFQKRSEKLRG YTLCGSLCWLLNNVIVGSPVAVIMELAFSGSILAAWWRHRAIRRCGCV >gi|283548477|gb|GG730300.1| GENE 122 132674 - 133195 534 173 aa, chain - ## HITS:1 COG:VC2563 KEGG:ns NR:ns ## COG: VC2563 COG0664 # Protein_GI_number: 15642558 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Vibrio cholerae # 19 172 32 187 189 84 32.0 1e-16 MALNQAQQWFAGSRRKAQPAGSWLLRQGEAQSKIHLLHHGVARAVYHTDNGVERVKEFYF AGEYCFLYLNWLTKTPADYSLQMITAGETSEISLALLDAPENQEMKTQLLVQQLIYKEKK EQMLLLNTPEQRYRYVQTHFPDWESQLTQRDLANYIGITPVSLSRIRQRLNKG >gi|283548477|gb|GG730300.1| GENE 123 133325 - 133537 358 70 aa, chain + ## HITS:1 COG:no KEGG:SARI_03617 NR:ns ## KEGG: SARI_03617 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 70 1 70 70 77 84.0 2e-13 MKSIKIFVVVIALATSFGSFAAQTVTATGSTLESAEAKIAAQAERAGASDYKITQAYSGN RVHMTAELLK >gi|283548477|gb|GG730300.1| GENE 124 133693 - 135528 216 611 aa, chain - ## HITS:1 COG:alr2242 KEGG:ns NR:ns ## COG: alr2242 COG5635 # Protein_GI_number: 17229734 # Func_class: T Signal transduction mechanisms # Function: Predicted NTPase (NACHT family) # Organism: Nostoc sp. PCC 7120 # 109 450 188 545 781 60 23.0 7e-09 MDFIFQELSKAGISLAVKELFSRVVAKWDNSNLNARKLVRELTNTEAYMNYLDKHVSRVV RLRTIHSADYDVLLNDIYHPLRITSLIPNSIPRLIEDGFVFENSNITNIIGIAGQGKSTI LRKVFIEQVTHGDKIPFFIELRKIGVNGIYKTLESILSNLGLKPAAIEIEELLSCGRIVL MLDGYDEINSNITEGLLNEMLQLNIKHKVQIIVTSRPGTTICNEPTIVNYKVEKLKENDI LAIIEKLNTHNKNIEKEQLKKIKETIKNNRNLVSVMTSPILVTLFHVCYPYMDIIPNNTV EFYSNLFVTLYLRHDKIKNFDREKSSALGHNEAYECFCALCFYSIYANNHEFTDLSLHEF TEKSMRIKGKEKECKPESLALDFMNVTCLIQKEGYNKYIFIHKSIQEYHAAEFIKHVSSD KKNQFYKLITEDIKNNDFRFSNVISFLTEIDDIDCAKHFIIPLCEHFEISKWASLDQIEY KELLRNFFVDTDIVIVYNNNEVTNIGFNTHTEFNNWLSIFCNTSYNNIYHSIFKFIFTHL KNNKIPEELNPNHKNEVKTSLLRLILSMGILDDVLNKFVENVIRLHNELYLCAVIKIKNE ADSMKELFDFT >gi|283548477|gb|GG730300.1| GENE 125 136222 - 136545 489 107 aa, chain - ## HITS:1 COG:no KEGG:KPN_04199 NR:ns ## KEGG: KPN_04199 # Name: not_defined # Def: putative inner membrane protein # Organism: K.pneumoniae # Pathway: not_defined # 1 106 1 106 107 134 92.0 1e-30 MGNMTLFIVGIAMLSLGTYLMRLGGAKLGSRLAFSERSQALLSDAATVLLFSVALATTFY EGEHFAGMARVLGVAFAVFLAWRKMPLIVVIIAAAVVTALLRMTGMS >gi|283548477|gb|GG730300.1| GENE 126 136545 - 137204 721 219 aa, chain - ## HITS:1 COG:STM4042 KEGG:ns NR:ns ## COG: STM4042 COG1296 # Protein_GI_number: 16767307 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 317 93.0 1e-86 MKHYFSSLKGDTLKAIFLVCLAVGVVGMSYGSLAMAYGFPLWVPFVLSITVLAGASEFMF IGIVASGGNPLAAAAAGLLVNARHVPFGVTVRDLVGSRAASFLGCHIMNDESVVFGLSQK TPEQRKAAYWLCGLGVAIFWPIGTLIGAGVGKLLPAPETIGLDAVFPAILLALVVPAFKN RTTLIRACSGAALSLASIPFAPVGLPVLLSLFGLLTRKK >gi|283548477|gb|GG730300.1| GENE 127 137306 - 137854 694 182 aa, chain + ## HITS:1 COG:STM4042A KEGG:ns NR:ns ## COG: STM4042A COG1396 # Protein_GI_number: 16767308 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 182 7 188 188 333 95.0 1e-91 MTQPISMIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALD IPFARLLEPQEQKTQVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRI SHPHPPGSVEHIIVTQGKAMVGLTEAPEELGEGDYICYPADRAHIFKALEPDTQAILVSE QN >gi|283548477|gb|GG730300.1| GENE 128 137912 - 138226 231 104 aa, chain - ## HITS:1 COG:STM4043 KEGG:ns NR:ns ## COG: STM4043 COG3254 # Protein_GI_number: 16767309 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 104 1 104 104 183 92.0 8e-47 MIRKAFVMQVNADAHVEYQRRHNPIWPELESVLKEHGAHHYAIYLDEVRNLLFATVEIES EARWNAVASTEVCQRWWKHMRDVMPANPDNSPVSTELKEVFYLQ >gi|283548477|gb|GG730300.1| GENE 129 138223 - 139371 1568 382 aa, chain - ## HITS:1 COG:STM4044 KEGG:ns NR:ns ## COG: STM4044 COG1454 # Protein_GI_number: 16767310 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Salmonella typhimurium LT2 # 1 382 1 382 382 682 96.0 0 MSFMLALPKISLHGAGAIRDMVNLVANKQWGKALIVTDGQLVKLGLLDSLFAALDEQQMS YHLFDEVFPNPTEELVQKGFAAYQGAECDYIIAFGGGSPIDTAKAVKILTANPAPSTAYS GVGKVKNAGVPLVAINTTAGTAAEMTSNAVIIDSGRKVKEVIIDPNIIPDIAVDDASVML EIPASVTAATGMDALTHAVEAYVSVGAHPLTDANALEAIRLINLWLPKAVDDGHNLEARE QMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPIIENFNRPNAVARFA RVAQAMGVDTRGMSDEAASMEAINAIRALSKRVGIPAGFSQLGVTKEDIEGWLDKALADP CAPCNPRTASRDEVRELYLEAL >gi|283548477|gb|GG730300.1| GENE 130 139499 - 140326 1133 275 aa, chain - ## HITS:1 COG:STM4045 KEGG:ns NR:ns ## COG: STM4045 COG0235 # Protein_GI_number: 16767311 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Salmonella typhimurium LT2 # 1 275 1 275 275 555 95.0 1e-158 MQNITTSWFIQGMIKATSDAWLKGWDERNGGNLTLRLDEEDIAPFSADFHEKPRYIALSQ PMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGYHILWGLTHEAVPTSELPA HFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENNTALITRKLWEGSTECLVVFPDGV GILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPSLDEAFGLIDTAEKSAEVLVK IYSMGGMKQTITREELIALGKRFGVTPLASAVELY >gi|283548477|gb|GG730300.1| GENE 131 140470 - 141729 1533 419 aa, chain - ## HITS:1 COG:STM4046 KEGG:ns NR:ns ## COG: STM4046 COG4806 # Protein_GI_number: 16767312 # Func_class: G Carbohydrate transport and metabolism # Function: L-rhamnose isomerase # Organism: Salmonella typhimurium LT2 # 1 418 1 418 419 830 95.0 0 MTTQLEQAWELAKLRFAAVGIDVEAALRQLDRLPVSMHCWQGDDVAGFENPEGSLTGGIQ ATGNYPGKARNASELRADLEQAMSLIPGPKRLNLHAIYLESDTPVARDQIKPEHFKNWVE WAKANQLGLDFNPSCFSHPLSADGFTLAHADDTIRQFWIDHCKASRRVSAYFGEQLGTPS VMNIWIPDGMKDITVDRLAPRQRLLEALDEVISEKLDPAHHIDAVESKLFGIGAESYTVG SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPRLLLHVSRPVRWDSDHVVL LDDETQAIASEIVRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTEQL RQLEASGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPVGSQWLDSVRAYEKEILSQRR >gi|283548477|gb|GG730300.1| GENE 132 141726 - 143195 1487 489 aa, chain - ## HITS:1 COG:STM4047 KEGG:ns NR:ns ## COG: STM4047 COG1070 # Protein_GI_number: 16767313 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Salmonella typhimurium LT2 # 1 489 1 489 489 909 87.0 0 MTFRHCVAVDLGASSGRVMLARYDSEHRTLTLREIHRFVNCLQKTDGFDTWDIDSLENDI RLGLKKVCDEGIRIDSIGIDTWGVDYVLVDNAGQRVGLPVSYRDSRTTGIMSQAMAQPGK SEIYRRSGIQFLPFNTLYQLRALVEQQPELLPQVAHALLIPDYFSFRLTGEMNWEYTNAT TTQLVNINTDDWDDTLLAWTGANKSWFGRPTHPGNVIGHWICPQKNHIPVVAVASHDTAS AVIASPLADKNSAYLSSGTWSLMGFESRTPYTNDAALAANITNEGGAEGRYRVLKNIMGL WLLQRVLKERQITDLPTLIAQTQAQPACQFLINPNDDRFINPDDMSAEIQAACRESGQPV PRQNAELARCIFDSLALLYADILQELADLRDAAFSQLHIVGGGCQNALLNQLCADACGIR VMSGPIEASTLGNIGVQLMTLDELNNVDDFRQVVRANYDLTTFIPNPESEIARYQAQFQS LRQTKELCA >gi|283548477|gb|GG730300.1| GENE 133 143496 - 144344 740 282 aa, chain + ## HITS:1 COG:STM4048 KEGG:ns NR:ns ## COG: STM4048 COG2207 # Protein_GI_number: 16767314 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 276 1 276 278 488 88.0 1e-138 MTVLHCVDFFPTGKAPVAIEPRLPQPAFPEHHHDFHEIVVVEHGTGIHVFNGQPYTISGG TVCFVRDHDRHLYEHTDNLCLTNVLYRSPDAFQFLAGLNQLLPQEQNGQYPSHWRVNQGV LQQVRHLLGQMEALGEGMDTPTAANREILFMQLLVLLRKSSLMEAATDNDARLNLLMAWL EDNFADEVCWEALAEKFSLSLRTLHRQLKQQTGLTPQRYLNRLRLIKARHLLRHSDDSVT DIAYLCGFGDSNHFSTLFRREFKWSPRDIRQGRDLIAGSSLQ >gi|283548477|gb|GG730300.1| GENE 134 144466 - 145314 540 282 aa, chain + ## HITS:1 COG:STM4049 KEGG:ns NR:ns ## COG: STM4049 COG2207 # Protein_GI_number: 16767315 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 282 1 282 282 481 84.0 1e-136 MANHLVLLKSDFFAHEQQAVAVADRYPQDVFAEHTHEFCELVLVWRGNGLHVLNDRPYRI TRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLTLNVDWEGAIPGFNGTPRQPHWRLGS LGMTQARQLISQLEHESNQRDAQACTMAELLFGQLVTHLKRHRYATDTLPATSSETLLDK LITALAGSHEHAFELDKFCQREQCSERVLRQQFRSQTGMTINQYLRQVRVCHAQYLLKHS RLMISEISMRCGFEDSNYFSVVFTRETGMTPSQWRHLSTQHD >gi|283548477|gb|GG730300.1| GENE 135 145311 - 146345 1496 344 aa, chain - ## HITS:1 COG:rhaT KEGG:ns NR:ns ## COG: rhaT COG0697 # Protein_GI_number: 16131747 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli K12 # 1 344 1 344 344 578 93.0 1e-165 MSNAITMGIFWHLIGAASAACFYAPFKQVKHWSWETMWSVGGIVSWLILPWTISAMLLPN FWAYFSSFSFSTLAPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPI INGNFDVLISTTGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVM CGIFSAGMSFAMNAAKPMHDAAAALGVDPLYVALPSYVVIMGGGALVNLGFCFIRLAKVK DLSLKADFSLAKPLIVTNVLLSALGGLMWYLQFFFYAWGHARIPAQYDYVSWMLHMSFYV LCGGIVGLVLKEWKNAGRRPVSVLSLGCVVIIVAANIVGLGMAS >gi|283548477|gb|GG730300.1| GENE 136 146635 - 147255 574 206 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 206 1 201 201 225 54 3e-57 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFASLSAEELIAK LDQLPADKKTVLRNNAGGHANHSLFWKGLKTGTTLQGDLKAAIERDFGSVDNFKAEFEKA AATRFGSGWAWLVLQGDKLAVVSTANQDSPLMGEAISGASGFPIVGLDVWEHAYYLKFQN RRPDYIKEFWNVVNWDEAAARFAAKK >gi|283548477|gb|GG730300.1| GENE 137 147486 - 148475 1286 329 aa, chain + ## HITS:1 COG:no KEGG:ECSE_4198 NR:ns ## KEGG: ECSE_4198 # Name: not_defined # Def: 2-keto-3-deoxygluconate permease # Organism: E.coli_SE11 # Pathway: not_defined # 1 329 13 341 341 491 95.0 1e-137 MEMQIKRTIERIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCM GASIKLSATGTVLRKSGTLVITKILVAWVVAAIASRILPEHGVEVGFFAGLSTLALVAAM DMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMVILGTAGIASFEPHVFVGAVLPF LIGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLSVIAQTGVLGILLGVAVIIITG IPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATSVIVT SILVPIITSIWSKKVKARAAEIDIRGTVK >gi|283548477|gb|GG730300.1| GENE 138 148517 - 149413 994 298 aa, chain - ## HITS:1 COG:STM3532 KEGG:ns NR:ns ## COG: STM3532 COG0329 # Protein_GI_number: 16766818 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Salmonella typhimurium LT2 # 1 264 1 266 301 159 34.0 4e-39 MTGQSQFAGVWCPSITPMDNDGKIDLNGLSQHLKRLTAAKIDVILLMGSIGEFASFTLDE RLLLIREARAMSSLKMVANVSSTCQNDVLLMAQEAYRAGYDAVMILPPYYYGQTAKQLLS YFRQLGQKLSGKWFAYNFPARTGCDLTPELVATLAAEFPNFAGIKDTVDCQSHTRSMIQT TRAVREDFAVLSGYDEYYIPNLLAGGAGIISGLNNVMPELFVSAREAFKQGDLAALRDIQ DQIGTYMSIYAIGEDFVTTIKTVVSRKFGYCTGVSRNAGGELNESERRTIDEVFVVEG >gi|283548477|gb|GG730300.1| GENE 139 149566 - 150267 537 233 aa, chain + ## HITS:1 COG:STM4056 KEGG:ns NR:ns ## COG: STM4056 COG2258 # Protein_GI_number: 16767322 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 227 22 248 250 388 80.0 1e-108 MRYPVDVFTGKVRDYTGSRPSAIAKVQVDGELMLTELGLTGDEQAETKIHGGPDRALCHY PREHYQHWRQAFPEQAALFVAPAFGENLSTEGLTEENVYIGDIFQWGEALIQVTQPRSPC FKLNFHFGISDMASQMQNAGKTGWLYSVIAAGQVSADAPLILASRVSDVSVREAIAIAWH MPFDDSQYHRLLSAAGLSKSWTRTMQKRRLSGRIEDNARRLWGGNPPQERKEV >gi|283548477|gb|GG730300.1| GENE 140 150267 - 150668 430 133 aa, chain + ## HITS:1 COG:no KEGG:SPC_4164 NR:ns ## KEGG: SPC_4164 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_C # Pathway: not_defined # 1 131 1 131 131 226 86.0 2e-58 MTESENAVAIVKAFLVASMIPDAERAATFMHPEVKITFTGRREMVGAADIARFNGERYKW VKKSLGEFDAVAHADCVVVYSNGTLYGEWPDGRAFAGNRYIDRFEVRDGKITHMDVWNDS AEWLLAPEISRQA >gi|283548477|gb|GG730300.1| GENE 141 151237 - 151461 97 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVMMIFVEAGANVNLKKLPASQPLPRKEMVQLLQWDSVPHRQGEAALQQIVERPNEKFNF HRWAYRFNHCINGN >gi|283548477|gb|GG730300.1| GENE 142 152169 - 152993 103 274 aa, chain - ## HITS:1 COG:rhsB KEGG:ns NR:ns ## COG: rhsB COG3209 # Protein_GI_number: 16131354 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 131 1129 1259 1411 195 69.0 6e-50 MLNQLAPVYTPRRKFHLYHCDHRGLPLALINQDGAISWRAEYDEWGNVLREDNPHNLQRL IRLPGQQCDEESGLYYNRHRYDSPGQDRYLTLDPIGLEGGLNPYTYPRNPIRKIDPLGLQ PWNSINMGSATTERASLGLWMAQNGASTDQMVKALAPLPPPSSISRECRVSGIAALGSGL SGSYSYNEKNGGNVLIGAPLAAIGLRGSLTCGLKFRSSDAKDLKTNAGFAIGLGFVSIEV TQTTKWPEVYIGSGTGIGPELKAPYTSSVSIPVY >gi|283548477|gb|GG730300.1| GENE 143 153134 - 153469 194 111 aa, chain - ## HITS:1 COG:no KEGG:EcolC_2198 NR:ns ## KEGG: EcolC_2198 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 109 11 120 124 95 42.0 4e-19 MNEYNILNEIEWHDGVFLDSRLSCKDGSINLMISVSVYNDNKRNELNVEFISVENLTMTM DVTEINDNRNAGNISNGYVKKVSNKSKYKFFLYFTDGYLNLTFKNIKVVYE >gi|283548477|gb|GG730300.1| GENE 144 153952 - 154206 151 84 aa, chain - ## HITS:1 COG:Z0851 KEGG:ns NR:ns ## COG: Z0851 COG3209 # Protein_GI_number: 15800404 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 EDL933 # 33 84 164 215 395 98 82.0 3e-21 MKDNNRLHTAGQSRNVPKLMVLLCGLEKELRHAEHDEWGNVLREDNPHNLQQLIRLPGQQ YDEESGLHYNRHRYYNPGTGRYIT >gi|283548477|gb|GG730300.1| GENE 145 155138 - 155290 58 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNSEAAECWQYNERGRLTEKDERRIRDGATIMITGTGWRITSVRSRGSR >gi|283548477|gb|GG730300.1| GENE 146 155303 - 155605 80 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834681|ref|ZP_06354422.1| ## NR: gi|283834681|ref|ZP_06354422.1| hypothetical protein CIT292_08898 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_08898 [Citrobacter youngae ATCC 29220] # 1 100 1 100 100 191 100.0 1e-47 MNKDEFLKKMNFPIEWKIYNMYPDELYFIQVKNYQDGDEQGSEHDRNGAFHWWLKRVPDR NELALLIKLTYLDPDQLMANDVRNYIRQAKNYDCGLESSF >gi|283548477|gb|GG730300.1| GENE 147 155703 - 155921 83 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLTVELHGIDPVKGEWFRISRVRKSRCSAEQKSFCKKLTDEAKKYYLRDKSIYLNMVNY WECLVIICRSET >gi|283548477|gb|GG730300.1| GENE 148 156642 - 160739 2883 1365 aa, chain - ## HITS:1 COG:ECs4864 KEGG:ns NR:ns ## COG: ECs4864 COG3209 # Protein_GI_number: 15834118 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 # 4 1238 3 1259 1394 1685 67.0 0 MSGGKPAARMGDMTKFGGPIVQGSMGVMIGAPTGVACSVCPGDVIYGPPVNPLLGAKVLP GETDFSLPGPLPFVLTRAYSSYRTRTPAPVGIFGPGWKAPCDIYLQVQDEELILNDNGGR SIHFEHLLPGEVAFSRSERFWLARGGVAKLHESHPLHRLWQALPEDIRLSPHQYLAANSP QGPWWLLGWSERVPDVDEALPAPLPPYRVLTGLVDSFGRRLSYHREAAGPFSGHITGVTD GAGRRFRLVLKQTDVLPVTRYGRDDGIRLGAVWLVHDPLYPDNLPASPLARYAYSPRGEL AAVYDRGGVQVRRFDYDAETPGRMVAHQYAGRPQTSYRYDAAGRVVEQLNPAGLSYRYEY QRDHVAITDSLHRREVLHTAGEGGLKRVVKKEYADGSVTCSEYNPAGWLTARTDAAGRKT EYRYSIASGNVTEIISPDGRKTAFYYNGGRQLTSVTHPDGLREKLAYDEQGRLTAQTSRQ GSTTRYVYADPHSEYPCAREDATGSKKQMTWSHYGQLLSVSDCSGYETRYEYDRFGQLTA MHQEEGLSRYRAYDTRGRPVSQHDAAGRETYYEYSEAGDLTAVIAPDGSRTETQHDAGGR PVSITAGGLTRQITYDAAGRVTQLTNENGSHTEFTYDALDRLTQQTGFDGRTQRYGYNTG GQLVRSEDEDLVTLWHYDDADRLTHRTVNGEPAEQWQYNDHGWLTGISHLSEGHRVAVHY GYDEKGRLLSEKQTVHAPQTQTLLWEHLTQHDYQNGLANKTTHDHLPPVAWLTYGSGWLA GVKLGDTPLIDFTRDRLHRETQRCFGEYTLATGYSAAGQLLSRHLNSPLLNRDYGYDGAG HLTRISTPHQTREYGYSQTGRLTGVRMIADGLDIRLPYATDPAGNRLPDPEFYPDSSRKI WADNRITEDAQYLYRYDRYGRLTEKTDRIPDGAIRMYDERTHRYSYDNQHRLVHCVRTQH GETQAEGRYIYDPQGRRVGKRVWKREPVHWSDTRTALSHRPYTTWYGWDGDRLTTTQTAQ TRVQTIYEPGSFTPLIRVETATEALDALRRHRTLAEKLRQEGSGDGAGVVFPPALVNMLD RLEGELRAGVISDANRQWLAGCGLTPEQMAAQMEPLPVPERTLHLYHCDHRGLPLALISQ DGAISWRAEYDEWGNVLREDNPHNLQQLIRLPGQQYDDESGLHYNRHRYYNPGLGRYITQ DPIGLKGGWNLYKYPLNPVEYIDPSGLDVRLVNTDAVGGWHRKVEVDEGTGTYGISFGVY TADPDIWGNVSGTPDVGKAGDGMVYVDNDSAIKVAESFKTTPEEDALIKKHLEQQVGKTG SYNVLFNSCRTYSNGEYNEMVRMIMKKRVKDKINDIIDTVKGFFK >gi|283548477|gb|GG730300.1| GENE 149 160938 - 162311 1360 457 aa, chain - ## HITS:1 COG:ECs4837 KEGG:ns NR:ns ## COG: ECs4837 COG0642 # Protein_GI_number: 15834091 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 # 1 457 1 457 457 806 97.0 0 MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELAND PPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERNEMQIIRNFIGQADNADHPQK KKYGRVEMVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSSPLLL WLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTTQQ RLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAHRLDSMINDLLVMSRNQQK NALVSETVKANQLWGEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRN ALRYSHTQIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLG LAIVETAIQQHRGWVKAEDSPLGGLRLVLWLPLYKRT >gi|283548477|gb|GG730300.1| GENE 150 162308 - 163006 853 232 aa, chain - ## HITS:1 COG:STM4059 KEGG:ns NR:ns ## COG: STM4059 COG0745 # Protein_GI_number: 16767325 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 232 1 232 232 401 98.0 1e-112 MNKILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVMMPKKNGI DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW SEQQQNSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLMVSAS >gi|283548477|gb|GG730300.1| GENE 151 163157 - 163657 329 166 aa, chain + ## HITS:1 COG:STM4060 KEGG:ns NR:ns ## COG: STM4060 COG3678 # Protein_GI_number: 16767326 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Salmonella typhimurium LT2 # 1 151 1 151 166 193 90.0 1e-49 MGKVTAAVMASTLAFSSLSHAAEVVTGDHWHLGEGSSQRSVQSHMFDGISLTEHQRQQMR DLMQQARHEQPPVNVSEMETMHRLVTAEKFDESAVRAQAERMAQEQVARQVEIARIRNQM YRLLTPEQQAVLNEKHEQRMEQLRDVAQWKKSSSLNLLSSSNSRSQ >gi|283548477|gb|GG730300.1| GENE 152 163805 - 164707 620 300 aa, chain + ## HITS:1 COG:STM4061 KEGG:ns NR:ns ## COG: STM4061 COG0053 # Protein_GI_number: 16767327 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Salmonella typhimurium LT2 # 1 299 1 299 300 539 93.0 1e-153 MNQTYGRLVSRAAIAATVMASLLLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVV RYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLIQPTPMKDPGVGVGV TIIALVCTIILVSFQRWVVKRTQSQAVRADMLHYQSDVMMNGAILIALGLSWYGWHRADA LFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG PTRFIQIHLEMEDNLPLVQAHVVAEQVEQAILRRFPGSDVIIHQDPCSVVPKEGKMFELS >gi|283548477|gb|GG730300.1| GENE 153 164893 - 165855 1193 320 aa, chain + ## HITS:1 COG:STM4062 KEGG:ns NR:ns ## COG: STM4062 COG0205 # Protein_GI_number: 16767328 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Salmonella typhimurium LT2 # 1 320 1 320 320 615 96.0 1e-176 MIKKIGVLTSGGDAPGMNAAIRGVVRAALTEGLEVMGIHDGYLGLYEDRMVQLDRYSVSD MINRGGTFLGSARFPEFRDENVRAVAIENLKKRGIDALVVIGGDGSYMGAKRLTEMGFPC IGLPGTIDNDIKGTDYTIGYFTALGTVVEAIDRLRDTSSSHQRISIVEVMGRYCGDLTLA AAIAGGCEFVVVPEVEFSRDDLVAEIKAGIAKGKKHAIVAITEHMCDVDELAHYIEKETG RETRSTVLGHIQRGGSPVPYDRILASRMGAYAIELLLEGHGGRCVGIQNEKLVHHDIIDA IENMKRPFKGDWLDCAKKLY >gi|283548477|gb|GG730300.1| GENE 154 166056 - 167045 1228 329 aa, chain + ## HITS:1 COG:sbp KEGG:ns NR:ns ## COG: sbp COG1613 # Protein_GI_number: 16131755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type sulfate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 329 1 329 329 630 96.0 1e-180 MNKWGVGLTLLLASTSVLAKDIQLLNVSYDPTRELYERYNKAFSAHWKQETGDNVVIRQS HGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWLKRLPDNSAPYTSTIVFLV RKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVKA LFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEP TVSVVDKVVEKKDTKTVAEAYLKYLYSPEGQEIAAKNFYRPRDAEVAKKYENAFPKLKLF TIDEEFGGWTKAQKEHFSNGGTFDQISKR >gi|283548477|gb|GG730300.1| GENE 155 167150 - 167911 713 253 aa, chain + ## HITS:1 COG:STM4064 KEGG:ns NR:ns ## COG: STM4064 COG2134 # Protein_GI_number: 16767330 # Func_class: I Lipid transport and metabolism # Function: CDP-diacylglycerol pyrophosphatase # Organism: Salmonella typhimurium LT2 # 1 249 1 249 251 424 79.0 1e-119 MKKAGYLLLAVMAIAAAAGIGYWKFTGNPDALRQIVLQQCLPHQLQQHDPAPCAEVKPDA GYVVFKDRNGPLQYLLMPGYRINGIESPLLLKSGTPNFFWLAWQARSFMSQKYGQEIPDK AVSLTINSRSGRTQNHLHIHISCLRTDVRKQLDDNLAKISTRWLPLPGGLRGHEYLARRV TENELAQRSPFMMLAEEVPDAREHMGSYALAMVRQSDESFVLLATQRNLLSLNLASAEEI QDHDCNLLNYSEN >gi|283548477|gb|GG730300.1| GENE 156 168339 - 169367 440 342 aa, chain + ## HITS:1 COG:no KEGG:ROD_38311 NR:ns ## KEGG: ROD_38311 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 342 1 343 343 432 68.0 1e-120 MLSGKHVSQLLGVVTFSLGLLTTPAEAKRYDWSLPENGTLTVNIARGALLIMTRDDGKSQ VSLDVQKINIARESTLTTRKIIGEIPSEEPQWSLAGQAATLTLPAPSDIDLQKVKGVTAA LILPSTGQYEINGTLSDVYLKGTKNNIRINVVNGKVIAQNAAAGTISIDVMKGSISTEAM KSDLSLKLRSGSLTDKDSTGAMVVDLVNGDLTLNSSAKSINIRQTTGKQTINALVCETFS NDLQTGNGTVRLGMPLVKGHIFSADGEITTIIPAGWQGKIVADGVTGNNIVNRLSEQKPI PVKPPLSDERLELVQGQTGTSEIALSTIGGVFTIQPSEPGSK >gi|283548477|gb|GG730300.1| GENE 157 169369 - 171606 1069 745 aa, chain + ## HITS:1 COG:FN2119 KEGG:ns NR:ns ## COG: FN2119 COG2849 # Protein_GI_number: 19705409 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 289 563 65 333 338 66 25.0 2e-10 MNKIRGWMLTTMLGSFVVFGNVMAADLGKLVHGPLATHDGQTLAFYQKDNMVTAYFTSAE DTGDHTLSDGEQLQNKQYALGNVSIVAVFYQDLDRGGQDEIIVMYRDDAGKPHLRAWGAD SESALPLTRFTPQLEKVAASLDKFTVANARKAIGRLLPQQYLVTSFPQDLPDPLFTEVLA SPDKYHSEFLRYFDEMGDDVKNMNDVNGYSIIFPDKFIERVNNKNEKTRYTLTMDVLRQG SCGNDDSGFAITGLYYQNITAEKDYRKEGPFVYFSQQGCQLVKNSIGQYHNSELDGEITN YSADEGRLLEKGNYRDGKREGVWQEYTVDFQRQEGKYRDDERDGVWQTFADSGEVVAVET WKNKTLNGLWQRKVQQKGTDSSWVVEEEGQYLNGDKEGEWKEMMTTEPRYAKYHRGLLEG ELRLTTPEGQNIAIKNYQHGLLNGEVNEWFANGKLKRHANYLNGQLQGEEIYYDKNGQMS ELHHWKIISPTDSGLCKNLILQEVCDRRAANQTDSVKEGEWRSWHEGGVLASLAHWKNGQ KFGAEYKFNYSGKLFSYARWEGGAYPVEDTRYDYSSSDDYAHKPVHMRLLADTHILRDGL KEQSTFQSGENNLSRQNYWCTTPSNAGAVCGMEYWWHDTGFLASKVLQQNNRKIESTSWD NKGVIDRQLVKASDSTFSDRFYVEGVLYSNTIILAKTYHDGNEDIVTADPSSAGVNYYYD KQGNEVPIEELRKQWKSDGANPLSE >gi|283548477|gb|GG730300.1| GENE 158 171693 - 172997 1461 434 aa, chain + ## HITS:1 COG:MTH788 KEGG:ns NR:ns ## COG: MTH788 COG0471 # Protein_GI_number: 15678812 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Methanothermobacter thermautotrophicus # 20 398 28 406 443 63 23.0 8e-10 MSLWLTHPLFIPSLVVGITILLWATSLLPEFITALLFFAVAMVAKIAPADVIFGGFASSA FWLVFSGFVLGIAIRKTGLADRAARALSSQLTDSWPLMVASVVLLSYALAFVMPSNMGRI ALLMPIVAAMAKRAGIHDGTRAWYGLALAVGFGTFQLSATILPANVPNLVMSGAAEGSYG IHLNYVPYLLLHTPVLGWLKGAILIVLVCWLFPGKPHAPRDLTPPEPMSRDEKRLAWMLA AVLFLWVSESWHGIGPAWTGLAAAVITLLPRVGFINGEEFSSGVNIRTCIYVAGILGLAI TVTQTGIGSAVGEALLQVMPLDAEKPFTSFLALTGITTALNFIMTANGVPALYTTLAQSF ADATGFPLLSVIMIQVLGYSTPLLPYQASPIVVAMALGKVPARAGMLLCISLAAATYLVL LPLDYLWFSVLGKL >gi|283548477|gb|GG730300.1| GENE 159 173110 - 174582 1455 490 aa, chain + ## HITS:1 COG:NMA2015 KEGG:ns NR:ns ## COG: NMA2015 COG0471 # Protein_GI_number: 15794895 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Neisseria meningitidis Z2491 # 24 490 22 488 488 437 57.0 1e-122 MDSLTPIRCWPAIISLVITLTIWFVIPCPPDVTPQAWHLLALFIGTIVAIIGKAMPIGAI AIVAIMLVAMTGVTNPGKPSAALNDALSGFSNQLIWLIGLSIMLSQSLLKTGLGARIGYG FIALFGKRTLGIAWALTLAETLIAPVTPSNTARGGGIIHPVMRAIAESLGSQPGNNENGS TGRYLALVNYNINPISSAMFITATAPNPLIVSFLTKGTDGVLNMSWGMWAIAALLPAVVS LIVMPIVIWWLYPPAITRTPNAPQFARQKLDALGPLSLAEKITLAVFALLLCLWAGVPAM LMGSAWSVNPTSAALIGLSILLMAGVLSWDDILKCRGAWDTIVWFAALVMMADFLSKQGL VGWLATSVGSAINHLGVHWSVATLLLILLYVYSHYFFASTTAHITAMFAAFFAAGLGLGA PPALLGLMLGFSSSLMMSLTHYGTGTAPIIFGSGYVTLAEWWKTGLVMSVVNLTIWGATG AFWWHWLGYW >gi|283548477|gb|GG730300.1| GENE 160 174626 - 175393 804 255 aa, chain - ## HITS:1 COG:STM4081 KEGG:ns NR:ns ## COG: STM4081 COG0149 # Protein_GI_number: 16767347 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Salmonella typhimurium LT2 # 1 255 1 255 255 439 97.0 1e-123 MRHPLVMGNWKLNGSRHMVNELVANLRKELAGVAGCAVAIAPPEMYIDLAKHAAAGSHII LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGVVIAYEPVWAIGTGKSATP AQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNAANAAELFAQPDIDGALVGGASLKAD AFAVIVKAAEAAKQA >gi|283548477|gb|GG730300.1| GENE 161 175505 - 176101 712 198 aa, chain - ## HITS:1 COG:no KEGG:SC3971 NR:ns ## KEGG: SC3971 # Name: yiiQ # Def: hypothetical protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 198 2 199 199 301 85.0 1e-80 MKQGYTLFLLLFSALTASTAALAEEPSTTITAPYLLAGAPTFDLSISQFRENFNTQNPKL ILNEFRAIDSSRDRANLTRAASKINENLYASSALEHGTLKIKSMQITWLPIQGPEQKAAK AKALEYMTAVIRTVAPLLTKEQSQKKLQKLLAAGKGKHYYTETEGAIRYVVADNGEKGLT FAVEPIKLALSESLEKAN >gi|283548477|gb|GG730300.1| GENE 162 176202 - 176630 495 142 aa, chain + ## HITS:1 COG:ECs4846 KEGG:ns NR:ns ## COG: ECs4846 COG3152 # Protein_GI_number: 15834100 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 142 1 142 146 229 90.0 1e-60 MTIQQWLFSFKGRIGRRDFWIWIGLWIVSMLALFSLASKQLLEIQTAAFCLVCLLWPTAA VTVKRLHDRGRSGAWALLMILAWMLLAGNWAMLPGVWQWAVGRFVPTLILVGMLIDLGAF VGTQDENKYGKDTQDVKYRADS >gi|283548477|gb|GG730300.1| GENE 163 176664 - 177410 889 248 aa, chain - ## HITS:1 COG:ECs4849 KEGG:ns NR:ns ## COG: ECs4849 COG1018 # Protein_GI_number: 15834103 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Escherichia coli O157:H7 # 1 248 1 248 248 483 94.0 1e-136 MADWVTGKVTKVQNWTDALFSLTVRAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN PDLEFYLVTVPDGKLSPRLAALKPGDDVQVVSEAAGFFVLDEVPDCDTLWMLATGTAIGP YLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQALEKRYEGKLRVQTVVSRETAENS LTGRVPALIESGELEKAVGLPMDKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPG HMTAEHYW >gi|283548477|gb|GG730300.1| GENE 164 177506 - 178516 1363 336 aa, chain - ## HITS:1 COG:glpX KEGG:ns NR:ns ## COG: glpX COG1494 # Protein_GI_number: 16131763 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins # Organism: Escherichia coli K12 # 1 336 1 336 336 584 94.0 1e-166 MRRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIMLNQVNIDGTIVIGEGEI DEAPMLFIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALAVLAVGDKGCFLNAPDMYM EKLIVGPGAKGSIDLNLSLEANLRNIAAALNKPLSELTVTILAKPRHDDVIAEMTKLGVR VFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARHDVKG DSEENRRIGEQELARCTAMGIEAGKALRLDEMARSDNVIFSATGITKGDLLEGISRKGNI ATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQAHIL >gi|283548477|gb|GG730300.1| GENE 165 178677 - 180185 2009 502 aa, chain - ## HITS:1 COG:STM4086 KEGG:ns NR:ns ## COG: STM4086 COG0554 # Protein_GI_number: 16767352 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Salmonella typhimurium LT2 # 1 502 1 502 502 991 95.0 0 MTEKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKAGWVEHDPMEIWATQSST LVEVLAKADISSDEIAAIGITNQRETTIVWERETGKPIYNAIVWQCRRTADICEKLKRDG MEEYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVH VTDYTNASRTMLFNIHSLDWDDKMLDALDIPRAMLPEVRRSSEVYGQTNIGGKGGIRIPI SGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVN YALEGAVFMAGASIQWLRDEMKLISDAFDSEYFATKVKDTNGVYVVPAFTGLGAPYWDPY ARGAIFGLTRGVNSNHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLM QFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTER NYRYSGWKKAVKRAMAWEDHDE >gi|283548477|gb|GG730300.1| GENE 166 180207 - 181052 716 281 aa, chain - ## HITS:1 COG:STM4087 KEGG:ns NR:ns ## COG: STM4087 COG0580 # Protein_GI_number: 16767353 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Salmonella typhimurium LT2 # 1 280 1 280 281 503 93.0 1e-142 MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGATFGQWEISIIWGLGVAMAIYLTA GVSGAHLNPAVTIALWLFACFDKRKVVPFIISQVAGAFCAAALVYGLYYNLFIDFEQTNH IVRGSAESLNLAGIFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAP LLIGLLIAVIGASMGPLTGFAMNPARDFGPKLFAGIAGWGEIAFTGGRDIPYFLVPVFGP ITGAILGAWAYRKLIGRHLPCDVCAIEEKDVAASTQQKASQ >gi|283548477|gb|GG730300.1| GENE 167 181487 - 181726 537 79 aa, chain + ## HITS:1 COG:STM4088 KEGG:ns NR:ns ## COG: STM4088 COG3074 # Protein_GI_number: 16767354 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 79 1 79 79 79 93.0 1e-15 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQSAQQQREELERENNNLKE QQSGWQDRLHALLGRMEEV >gi|283548477|gb|GG730300.1| GENE 168 181847 - 182332 572 161 aa, chain - ## HITS:1 COG:STM4089 KEGG:ns NR:ns ## COG: STM4089 COG0684 # Protein_GI_number: 16767355 # Func_class: H Coenzyme transport and metabolism # Function: Demethylmenaquinone methyltransferase # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 292 96.0 1e-79 MKYDTSELCDIYQEDVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYDLLEQNGRGRI LLVDGGGSVRRALVDAELARLAVQNEWEGLVIYGSVRQVDDLGELDIGIQAIAAIPVGAS GEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE >gi|283548477|gb|GG730300.1| GENE 169 182425 - 183354 1183 309 aa, chain - ## HITS:1 COG:ECs4857 KEGG:ns NR:ns ## COG: ECs4857 COG1575 # Protein_GI_number: 15834111 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Escherichia coli O157:H7 # 1 308 1 307 308 548 95.0 1e-156 MTEQQQISRSQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPLVALLALITAGLLQIL SNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQQMKRALIVTVVLICLSGLALVAVACH TLADFVGFLVLGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLI PALILPATACGLLATAVLNVNNLRDINSDRENGKNTLVVRLGAVNARRYHACLLMGTLVC LALFNLFSLQSLWGWLFILAAPLLFKQARYVMREMNPEAMRPMLERTVKAALLTNLLFVV GIFLSQWSL >gi|283548477|gb|GG730300.1| GENE 170 183422 - 184753 1208 443 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 4 443 8 466 466 469 53 1e-131 MSEMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEELRHEVTPKNILMIGPTG VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRVQAIEKNR FRAEEMAEERILDVLIPPAKNNWGQSEQPQEPSAARQAFRKKLREGQLDDKEIEIDLAAA PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELK QEAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD HILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTGDFERILTEPNASITVQYKALMA TEGVNIDFTESGIKRIAEAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQNITI DAEYVSKHLDALVADEDLSRFIL >gi|283548477|gb|GG730300.1| GENE 171 184763 - 185212 626 149 aa, chain - ## HITS:1 COG:STM4092 KEGG:ns NR:ns ## COG: STM4092 COG5405 # Protein_GI_number: 16767358 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Salmonella typhimurium LT2 # 1 149 28 176 176 276 97.0 1e-74 MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR MLRKLEALLAVADENASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELGARE IAEKALDIAGDICIYTNHFHTIEELNSKA >gi|283548477|gb|GG730300.1| GENE 172 185385 - 186254 664 289 aa, chain - ## HITS:1 COG:STM4093 KEGG:ns NR:ns ## COG: STM4093 COG3087 # Protein_GI_number: 16767359 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Salmonella typhimurium LT2 # 1 289 39 324 324 316 81.0 3e-86 MVAIAAAVLVTFIGGLYFITHHKKEESETLQNQKVTGNGIPPKPEERWRYIKELESRQPG VRAPTEPSAGGEVLNADQLTNEQRQLLAQMQADMRQQPTQLNEVPWNEQTPEQRQQTLQR QRQVQQQQWNNTQQQAQQPRPRATEQTYQQQQTRTVQAAPVQQPKAQPKPAAQQPYQDLL QTPAHTTAAQPKTQPAAPITNETQPPKQTAEKKDERRWMVQCGSFKGAEQAETVRAQLAF EGFNSHITTNNGWNRVVIGPVKGKENADNTISRLKVAGHTNCIRLATGG >gi|283548477|gb|GG730300.1| GENE 173 186453 - 187478 906 341 aa, chain - ## HITS:1 COG:STM4094 KEGG:ns NR:ns ## COG: STM4094 COG1609 # Protein_GI_number: 16767360 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 340 1 340 341 652 94.0 0 MKPNKQVAAATMKDVALKAKVSTATVSRALMNPDKVSQSTRNKVEQAALEVGYLPQSMGR NVKRNESRTILVIVPDICDPFFSEVIRGIEVTAAEQGYLVLIGDCAHQNQQEKTFLNLII TKQIDGMVLLSSRLPFDASVEEQRNLPPMVMSNEFAPELELPTVHIDNLTAAFNAMNYLL ELGHKRIGCIAGPEDMPLCHYRLQGYVQALRRSGITVDPHFIARGDFTYEAGANALKQLL TLPQPPTAVFCHSDVMALGALSYAKRQGLKVPDDLSIIGFDNISLTEFCDPPLTTVAQPR FDIGREAMLLLLDQLQGQNVSSGSRLLDCELIIRGTTRALT >gi|283548477|gb|GG730300.1| GENE 174 187634 - 189832 1898 732 aa, chain - ## HITS:1 COG:priA KEGG:ns NR:ns ## COG: priA COG1198 # Protein_GI_number: 16131773 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Escherichia coli K12 # 1 732 1 732 732 1410 93.0 0 MPVAHVALPVPLPRTFDYLLPQGMSAKAGCRVRVPFGKQQERVGIVLSVSEHSELPLNEL KAVLEVLDSEPVYSTSVWRLLLWAADYYHHPIGDVLFHALPILLRQGRPAANAPMWYWFA TEEGQVIDLNSLKRSPKQQQALAALRQGKIWRDRVAELEFNDAALQALRKKGLCDLASET PGFSDWRTHYAVSGERLRLNTEQATAVGAIHSAADSFSAWLLAGVTGSGKTEVYLSVLEN VLAQGKQALVMVPEIGLTPQTIARFRERFNAPIEVLHSGLNDSERLSAWLKAKNGEAAIV IGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPA LETLCNVRQKKYRMLRLTRRAGNARPATQHVLDLKGQQVQAGLAPALITRMRQHLQADNQ VILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPIPRQCPSCG STHMVPVGLGTEQLEQALAPFFPGVPISRIDRDTTSRKGSLEQHLAEVHRGGARILIGTQ MLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHH PEHPLLQTLLYKGYDAFAEQALAERQTLQLPPWTSHVIVRAEDHNNQHAPMFLQQLRNLI QASPLADDKLWVLGPVPALAPKRGGRYRWQILLQHPSRIRLQHIVSGTLALINTLPDARK VKWVLDVDPIEG >gi|283548477|gb|GG730300.1| GENE 175 190090 - 190302 378 70 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804527|ref|NP_290567.1| 50S ribosomal protein L31 [Escherichia coli O157:H7 EDL933] # 1 70 1 70 70 150 97 1e-34 MKKDIHPKYEEITANCSCGNVMKIRSTVGHDLNLDVCSKCHPFYTGKQRDVATGGRVDRF NKRFNIPGSK >gi|283548477|gb|GG730300.1| GENE 176 190641 - 191321 742 226 aa, chain + ## HITS:1 COG:no KEGG:SARI_03559 NR:ns ## KEGG: SARI_03559 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 14 226 14 226 226 346 92.0 4e-94 MKFKSALLLIPLFSVAAQAGYVDYRHEYYDDGRNYDRVYMSHRFATGFGVAVEAISRSED TQSNDAWNNMESNGNEYTASYQFTWQDLIWQPGIAIETGDNITIYKPYIRVQYNINDSWW TAFRYRQEYMRRNTDGKDDRMVYRPEAWLGYNINDWMFELNGIYKIADSEDLYNNRKDDY EYNFRVAYKIGSWVPFVEVGNVSSGYNTTTTDDRQTRYRVGLGYNF >gi|283548477|gb|GG730300.1| GENE 177 191411 - 192835 1308 474 aa, chain + ## HITS:1 COG:BS_yjmB KEGG:ns NR:ns ## COG: BS_yjmB COG2211 # Protein_GI_number: 16078296 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Bacillus subtilis # 19 468 18 457 459 167 29.0 6e-41 MSNDGTMIGSNQSIAVRPFGLRDKFGYLCGDLGTCFILGLVNSFLMIYYTNVLGISGVIV GSLYFVTKLFDAFVDVGVGRLCDTSKLTVHGRFNPWVRRMKYPFCIIAVVLFLPFVNDFS YTAKIIYICCSYFIYGSLLSTVSIPYGAMSAAISSNPEDRVSLSTWRSVGSAIGGGATGF FIPILMYTTLVDGSQVISGQHFFWIAIGCAVLGFIFLTLTCQLTTERVRVERKEGMPVSV LLKGLLRNEALIVLVVVDLLIVINQGLSGTNMTYLFNDYFHNKEAMSVALLFTFGSLVLL APSASWLTNRFGKKEASVGALLFAVAMYLLMYFIHITDAKVYLVFLFLATLGAGLFNLMI WAFMTDVCDYHQYVTGDREDGTVYGVNFFARKVGQACAGAIGGFMLAIIGYQSSSTGGAV QTSIVQENIYTMANLLPALCLFLAAVILIYFYPLNRKETLKMEETLNKINGISK >gi|283548477|gb|GG730300.1| GENE 178 192889 - 193206 391 105 aa, chain - ## HITS:1 COG:YPO0114 KEGG:ns NR:ns ## COG: YPO0114 COG3060 # Protein_GI_number: 16120460 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulator of met regulon # Organism: Yersinia pestis # 1 105 1 105 105 190 90.0 5e-49 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE AFLHAFTGQPLPNDDDLRKERSDEIPEEAKVIMRELGINPETWEY >gi|283548477|gb|GG730300.1| GENE 179 193472 - 194632 1139 386 aa, chain + ## HITS:1 COG:metB KEGG:ns NR:ns ## COG: metB COG0626 # Protein_GI_number: 16131777 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1 386 1 386 386 754 97.0 0 MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRA LAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL FVDQGDERALQAALAEKPKLVLVESPSNPLLRVVDIAKICQLAREAGAVSVVDNTFLSPA LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPQMVTELAWWANNIGVTGGAFDSYL LLRGLRTLSPRMEVAQRNAQAIVDYLQTQPLVKKLYHPSLPDNQGHEIAARQQKGFGAML SFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLL RISTGIEDGEDLIADLENGFRAANKG >gi|283548477|gb|GG730300.1| GENE 180 194635 - 197067 2778 810 aa, chain + ## HITS:1 COG:metL_1 KEGG:ns NR:ns ## COG: metL_1 COG0527 # Protein_GI_number: 16131778 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1 448 1 448 448 826 93.0 0 MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDMMVVSAAGSTTNQLISW LKLSQTDRLSAHQVQQALRRYQSDLIGGLLPPEVADGLIGAFIHDLERLAGLLDSGVNDA VYAEVVGHGEVWSARLMSAVLNQQGLESAWLDARDFLRAERSAQPQVDEGLSYPLLQQLL AQHPGKRLVVTGFISRSSAGETVLLGRNGSDYSATQVGALAGVSRVTIWSDVAGVYSADP RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYTPEQGSTRIER VLASGTGARIVTSHDDVCLIEFQVPAGQDFKLAYKEVDQILKRTQVRPLAVGVHPDRQLL QFCYTSEVADGALRILDEAGLPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQPV EFTWQSEEGISLVAVLRTGPTESLIQGLHQSIFRAEKRIGLVLFGKGNIGSRWLELFARE QSTLSARTGLEFVLAGVVDSRRSLLNYEGLDASRALAFFDDEAVEQDEESLFLWMRAHPY DDLVVLDVTASEQLADQYLDFASHGFHVISANKLAGASSSNNYRQIHDAFEKTGRHWLYN ATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGTVPFTDLVDQAWQQGLT EPDPRVDLSGKDVMRKLVILAREAGYDIEPDQVRVESLVPAHCEEGSIDHFFENGDELNE QMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVRPEHPLAALLPCDNVFAIESRWYRD NPLVIRGPGAGRDVTAGAIQSDINRLAQLL >gi|283548477|gb|GG730300.1| GENE 181 197115 - 198278 395 387 aa, chain - ## HITS:1 COG:no KEGG:APECO1_2527 NR:ns ## KEGG: APECO1_2527 # Name: not_defined # Def: putative cytoplasmic protein # Organism: E.coli_APEC # Pathway: not_defined # 1 368 1 367 374 493 62.0 1e-138 MTSLFTINCCKSFGCQNLGLASSPDYRWPDYRLGYAALHCRACGSYPPLFNDEQFSRWLS ACLTQFATDSGLFCPDCYQRETIRYGRNPQGSQRVQCRACKKVWTPKRRPFTPIESPEQI ATVPLIVPFQGASAEQKLYILLSFDAIRGNILHVSSNFTPYPIGDSLRYRWRGIGEATAA HDDIVQRVAQRETQFLRRSQFDEIQYGSAELKRNASGAILRPVIAAHGHFRVLSHLWPEV KTHIIAHECFLRGAAVTAWAEQFREHRAALWFIDEEINDNTCLLPWRLRGKTYQGWWRNQ WQIWEQGNNRKMACLLTEGLVEKGASITLAASHYFIAWLQQQPEFRDSNRCAAHSVFQVM RLLAEKYNILIAQRDLPGGAAAYRAYG >gi|283548477|gb|GG730300.1| GENE 182 198412 - 199968 1643 518 aa, chain + ## HITS:1 COG:STM4104 KEGG:ns NR:ns ## COG: STM4104 COG0737 # Protein_GI_number: 16767370 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Salmonella typhimurium LT2 # 1 518 1 518 518 957 90.0 0 MKLKMLAVGVLVSLPLWASAKDVTIIYTNDLHAHVEPYKVPWIANGTRDIGGWANITTMV KQEKAKNSATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMHFDAVTMGNHEFDHGWDNTL LQLSQAKFPIVQGNIFYQNSSKMFWDKPWTIIEKDGVKIGVIGLHGVFAFNDTVSASTRV GIEARDEVKWLQRYIDELKGKVDLTVALIHEGTPARQSSQGSTDVRRALDKDIQTAGQVH GLDILITGHAHVGTPEPIKVGNTLILSTDSGGIDVGKLVLDYQQKPHHFTVKNFELKTIY ADEWKPDPQTKQVIDGWNKKLDEVVQQTVANSPVELTRAYGESSSLGNLAADALLAAAGK DTQLALTNSGGIRNEIPSGAITMGAVISTFPFPNELSTMDLTGKQLRSLMEHGAGLSNGV LQVSKGLEMKYDSSKPVGQRVTLLTLNGKPIEDATTYHIATNSFLADGGDGFAAFTEGKA RNTSGGYYVSNAVVDYFKTGHTLTDEQLKGMRVEDVKK >gi|283548477|gb|GG730300.1| GENE 183 200163 - 201050 1027 295 aa, chain + ## HITS:1 COG:STM4105 KEGG:ns NR:ns ## COG: STM4105 COG0685 # Protein_GI_number: 16767371 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Salmonella typhimurium LT2 # 1 294 1 294 296 591 96.0 1e-169 MSFFHANQREALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY GANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATRDELRTIAQDYWNNGIRHIVALRGD LPPGSGKPDMYASDLVTLLKDVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRA ITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMSTMFA GLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPN >gi|283548477|gb|GG730300.1| GENE 184 201219 - 203399 2330 726 aa, chain + ## HITS:1 COG:STM4106 KEGG:ns NR:ns ## COG: STM4106 COG0376 # Protein_GI_number: 16767372 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase (peroxidase I) # Organism: Salmonella typhimurium LT2 # 1 725 1 725 726 1316 91.0 0 MSMSDDSQNASTAGKCPFHQGGSDHSAGAGRHNRDWWPNQLRVDLLNQHSNRSNPLGEDF DYRKEFSKLDYSALKGDLRALLSESQPWWPADWGSYAGLFIRMAWHGAGTYRSIDGRGGA GRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFG FGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKTPLGATEMGLIYVNPEGPDHSGEPLS AAAAIRATFGNMGMNDEETVALIGGGHTLGKTHGAAPASHVGADPESAPIEAQGLGWASS YGSGSGADTITSGLEVVWTQTPTQWSNYFFENLFKYEWVQTRSPAGAIQFEAVDAPEIIP DPFDPSKKRKPTMLVTDLTLRFDPEFEKISRRFLNDPQAFNEAFARAWFKLTHRDMGPKA RYIGPEVPKEDLIWQDPLPHAFFNPSEEDILNLKATIAASGLSVGELVSVAWASASTFRG GDKRGGANGARLALAPQRDWDVNATAARVLPVLEGIYKSAHTASLADIIVLAGVVGVEKA ASAAGVSITVPFVPGRVDARQDQTDIEMFELLKPIADGFRNYRSRPDVSTTESLLIDKAQ QLTLTAPEMTVLVGGMRVLDTNFDGSQHGVFTDRPGVLSTDFFVNLLDMRHEWKAVDESQ ELFEGRDRLSGEVKYTATRADLVFGSNSVLRAVAEVYACSDAHEKFVKDFVAAWVKVMNL DRFDLL >gi|283548477|gb|GG730300.1| GENE 185 203503 - 204606 1378 367 aa, chain - ## HITS:1 COG:gldA KEGG:ns NR:ns ## COG: gldA COG0371 # Protein_GI_number: 16131783 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Escherichia coli K12 # 1 367 14 380 380 670 93.0 0 MDRIIQSPGKYIQGADVITRLGSYLKPLAERWLVVGDKFVLGFAQSALEKSFQDAGLALE IAPFGGECSQNEIDRLRGVAEKAQCGAVLGIGGGKTLDTAKALAHFMGVPVAIAPTIAST DAPCSALSVIYTDAGEFDRYLLLPNNPDRVIVDTKIVAGAPARLLAAGIGDALATWFEAR ACSRSGATTMAGGQCTQAALALAELCFNTLIEEGEKAMLAAEQHVVTPALERVIEANTYL SGVGFESGGLAAAHAIHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVDEIETVAALC HSVGLPITLAQLDIKQDIPAKMRIVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQ RYLQEWE >gi|283548477|gb|GG730300.1| GENE 186 204619 - 205281 807 220 aa, chain - ## HITS:1 COG:STM4109 KEGG:ns NR:ns ## COG: STM4109 COG0176 # Protein_GI_number: 16767375 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 377 90.0 1e-105 MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWDVLPRLQKVIGENGVLFAQT MSRSAQGMVDEAKRLSNALPGIVVKIPVTAEGLAAIRLLKKEGITTLGTAVYSAAQGLLA ALAGAKYIAPYVNRIDAQGGDGIRTVQELQTLLELHAPNSMVLAASFKTPRQALDCLLAG CEAITLPLDVAQQMLNTPAVESAIEKFEQDWNNAFGHINL >gi|283548477|gb|GG730300.1| GENE 187 205527 - 206387 584 286 aa, chain - ## HITS:1 COG:yijO KEGG:ns NR:ns ## COG: yijO COG2207 # Protein_GI_number: 16131792 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 281 1 278 283 469 86.0 1e-132 MYHDVSHLLARLINGPSPLRQVYFASTANATPELAHQVDFPRLEIVLEGEFTDRGVAGAS ATLQPCDVLFVPAGGWNFPQWLAPVTILSILFSKQQLVFNVVQWDGKQYQNLVKQHVARR GPRIGSFLLQTLNEIQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDH IDEHYASPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYELKI KDVAHASGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKAIRQQ >gi|283548477|gb|GG730300.1| GENE 188 206539 - 208272 1716 577 aa, chain - ## HITS:1 COG:STM4118 KEGG:ns NR:ns ## COG: STM4118 COG2194 # Protein_GI_number: 16767383 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Salmonella typhimurium LT2 # 1 577 1 577 577 1052 90.0 0 MQSLQPQSKPVFSWKALGWALLYFWFFSSLLQVVICLTGYSGTTGLRDSLLFSSLWLIPV FLFPNRIRAIAAVIGVILWAASLAALSYYVIYGQEFSQSVLYVMFETNANEASEYLSQYF SLKIVLIALAYTVMAILLWTRLRPVHIPSPWRYLVSFALLYGLILHPIAVNTFIKHKPFE KTLDGLASRMEPAAPWQFISGYYQYRQQLTALNSLLNENNALPPLANFKDHSGDAPRTLV LVIGESTQRGRMSLYGYPRETTPELDALHKSDPNFTVFNNVVTSRPYTIEILQQALTFAN EKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSKQTDKQFYMNQQRTQS AREYDSNVLAPFKEVLADPAPKKFIIVHLLGTHIKYKFRYPDGQGKFDNNIDNVPAGLGN DELEAYNDYDSANVYNDHIIASLIKDYKATDPNGFLLYFSDHGEEVYDTPPHKTQGRNED NPTRHMYTVPFLLWTSEKWQAAHPRDFSQDVNRKYSSSELIHTWSDLAGFTYDGFDPTRS ITSPQFKETTRWIGNPYKKNALIDYDTLPYGDQIGNQ >gi|283548477|gb|GG730300.1| GENE 189 208482 - 211094 2806 870 aa, chain - ## HITS:1 COG:STM4119 KEGG:ns NR:ns ## COG: STM4119 COG2352 # Protein_GI_number: 16767384 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxylase # Organism: Salmonella typhimurium LT2 # 1 870 14 883 883 1641 94.0 0 MLGKVLGETIKDALGEHILDRVETIRKLSKSSRAGNEVNRQELLTTLQNLSNDELLPVAR AFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKDQPNLDEATIKKAVESLSLEL VLTAHPTEITRRTLIHKMGEVNACLKQLDNKDLVDYERHQLMRRLRQLIAQSWHTDEIRK IRPSPVDEAKWGFAVVENSLWEGVPNYLRELNEQLEENLGYKLPVDFVPVRFTSWMGGDR DGNPNVTADITRHVLLLSRWKATDLFLKDIQFLISELSMVDATPELMAMVGEEGAAEPYR YLMKTLRSRLMATQAWLEARLKGEKLPKPAGLLTQNEQLWEPLYACYQSLQACGMGIIAN GELLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYENWSEADKQAFLIRE LNSKRPLLPRNWEPSNDTREVLDTCRVIAEAPYGSIAAYVISMAKTPSDVLAVHLLLKEA GIGFAMPVAPLFETLDDLNNADDVMSQLLNIDWYRGFIQGKQMVMIGYSDSAKDAGVMAA SWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQ GEMIRFKYGLPEVTISSLSLYTAAILEANLLPPPEPKDNWRHIMDELSDISCELYRGYVR ENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLG AGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVKKELWP LGEELRQRQEADINVVLAIANDSHLMADLPWIAESIQLRNVYTDPLNVLQAELLHRSRLA EEQGKAPDPRVEQALMVTIAGVAAGMRNTG >gi|283548477|gb|GG730300.1| GENE 190 211446 - 212636 937 396 aa, chain - ## HITS:1 COG:argE KEGG:ns NR:ns ## COG: argE COG0624 # Protein_GI_number: 16131795 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Escherichia coli K12 # 14 396 1 383 383 766 95.0 0 MNIDTIMTRGVSTMKNNLPPFIEIYRALIATPSISATEEALDQSNAGLITLLAGWFKDLG FNVEVQPVPDTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDNKLYG LGTADMKGFFAFILDALRDVDVTRLKKPLYILATADEETSMAGARYFSETTALRPDCAII GEPTSLQPVRAHKGHISNAIRILGQSGHSSDPARGVNAIELMHDAIGHIMALRDDLKERY HHDAFTVPYPTLNLGHIHGGDAANRICACCELHMDIRPLPGMTLNDLNGLLNDALAPVSE RWPGRLTVSELHPPIPGYECPPDHQLVEVVEKLLGAQTEVVNYCTEAPFIQTLCPTLVLG PGSINQAHQPDEYLETRFIKPTRELITQVVHHFCWH >gi|283548477|gb|GG730300.1| GENE 191 212753 - 213757 1054 334 aa, chain + ## HITS:1 COG:STM4121 KEGG:ns NR:ns ## COG: STM4121 COG0002 # Protein_GI_number: 16767386 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 625 92.0 1e-179 MLNTLIVGASGYAGAELVTYVNRHPDMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPL QPMSDISEFSAGVDVVFLATAHEVSHDLAPQFLQAGCVVLDLSGAFRVNDGAFYEKYYGF THQHPDLLAQAVYGLAEWKADQLKEANLIAVPGCYPTAAQLSLKPLIDAGLLDLGQWPVI NATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEIATHLGAEVIFTPHLGNFPRGIL ETITCRLKAGVTHEQVAQALQQAYGDKPLVRLYEKGVPALKNVVGLPFCDIGFAVQGEHL IVVATEDNLLKGAAAQAMQCANIRFGFAETQSLI >gi|283548477|gb|GG730300.1| GENE 192 213768 - 214541 1131 257 aa, chain + ## HITS:1 COG:ECs4888 KEGG:ns NR:ns ## COG: ECs4888 COG0548 # Protein_GI_number: 15834142 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1 257 2 258 258 432 94.0 1e-121 MNPLIIKLGGVLLDSEEALERLFTALVNYRESHQRPLIIVHGGGCVVDELMKQLNLPVKK KNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIASVGLYLGDGDSVKVTPLDKELGH VGLAQPGSPKLINTLLENGFLPVVSSIGVTEDGLLMNVNADQAATALAATLGADLILLSD VSGILDGKGQRIAEMTAAKAEQLIDQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAE QLPALFNGTPIGTRILA >gi|283548477|gb|GG730300.1| GENE 193 214658 - 216034 1759 458 aa, chain + ## HITS:1 COG:STM4123 KEGG:ns NR:ns ## COG: STM4123 COG0165 # Protein_GI_number: 16767388 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Salmonella typhimurium LT2 # 1 458 1 458 458 853 95.0 0 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTVDEQLQLEE ALNTLLEEVRENPQQILQSDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLW CKDTVLELLSANRQLQSALVVTAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDE SRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLS DASIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ GALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAA QQGYANATELADYLVAKGVPFREAHHIVGETVVEAIRQGKPLEALSLADLQKFSQVIGDD VYPILSLQSCLDKRAAKGGVSPQQVAQAIDYAKARLAL >gi|283548477|gb|GG730300.1| GENE 194 216369 - 217286 1005 305 aa, chain + ## HITS:1 COG:ECs4890 KEGG:ns NR:ns ## COG: ECs4890 COG0583 # Protein_GI_number: 15834144 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 586 97.0 1e-167 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA GLLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPLFDEPMMLAIYEDHPWANREC VPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL PALAVPSERKRDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRGSMDGHFDRA LKQAV >gi|283548477|gb|GG730300.1| GENE 195 217269 - 218669 445 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 7 453 4 443 458 176 27 3e-42 MSHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAV SRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFV DEHTIALECHDGTVETLTADKFVIACGSRPYRPVDVDFSHPRIYDSDSILSLHHEPRHVL IYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY EKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLKTDSRGQLKVNSMYQ TALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVG KTEQQLTAMKVPYEVGRAQFKHLARAQIVGMSVGTLKILFHRETKEILGIHCFGERAAEI IHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAALNGLNRLF >gi|283548477|gb|GG730300.1| GENE 196 218840 - 219496 635 218 aa, chain + ## HITS:1 COG:ECs4894 KEGG:ns NR:ns ## COG: ECs4894 COG1309 # Protein_GI_number: 15834148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 3 212 14 223 234 355 98.0 3e-98 MWKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHF RDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRE RSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVG AEQRRQLEERLVLQLRMIAKGAFYWYRREQEKMTHHSE >gi|283548477|gb|GG730300.1| GENE 197 219512 - 219871 436 119 aa, chain + ## HITS:1 COG:no KEGG:SG3288 NR:ns ## KEGG: SG3288 # Name: yijD # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 119 1 119 139 223 94.0 1e-57 MKQSGQDKGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYQNRTMP VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVVLVFWIGFKVRNRKQELAE >gi|283548477|gb|GG730300.1| GENE 198 219954 - 221054 1270 366 aa, chain - ## HITS:1 COG:trmA KEGG:ns NR:ns ## COG: trmA COG2265 # Protein_GI_number: 16131803 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Escherichia coli K12 # 1 366 1 366 366 695 93.0 0 MTPEHLPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLY HIMFDSQTKRRIRVDSFPAASELINTLMTAMIEGVRNNPVLRHKLFQIDYLTTLSDRAVV SMLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEII YRQVENSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEI AKPSVAAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVREFNRLLGIDLKSYQCETIFVDP PRSGLDSETEKMVQAYPRIMYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG VLLTKK >gi|283548477|gb|GG730300.1| GENE 199 221422 - 223260 1830 612 aa, chain + ## HITS:1 COG:STM4130 KEGG:ns NR:ns ## COG: STM4130 COG4206 # Protein_GI_number: 16767394 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Salmonella typhimurium LT2 # 1 612 1 614 614 1031 87.0 0 MIKKSLLWTALSVTAFSGWAQDTSPDTLVVTANRFQQPRSAVLAPITVVTRQDIDRWQST SVNDVLRRLPGVDIAQSGGMGQNSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFP VSLVQRIEYIRGPRSAIYGSDAIGGVVNIITTREKPGTELTAGMGSNGYQNYNVSTQQQL GEDTLVTLMGDYAYTKGFDVVAYGSTGSQAQPDKDGFLSKTLYGALEHNFSDTWSGFVRG YGYDNRTNYDSYYSPNSPLIDTRKLYSQSWDAGLRFNGEIIQSQLVSSYSHSKDYNYDPN YGRYDSSATLDDMKQYNVQWSNSMVVGHGNVGAGVDWQKQTTTPGTGYVTDGYDQRNTGL YLTGLQQLGDFTFEGAARSDDNSEFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ LHGYYGNSNLDPEQSKQWEGAFEGLTAGVNWRVSGYRNDIDDMIDYDPHTEKYFNQGKVR IKGVEATANFDTGPLAHTLSYDYVDSRNAITDKPLARRSKQQVKYQLDWQVYDFDWGLTY HYLGTRYDTDYVTYQPVKMGGVSLWDLTVAYPITSQLTVRGKIANLFDKDYETVYGYATA GREYTLSGSYTF >gi|283548477|gb|GG730300.1| GENE 200 223205 - 224056 695 283 aa, chain + ## HITS:1 COG:STM4131 KEGG:ns NR:ns ## COG: STM4131 COG0796 # Protein_GI_number: 16767395 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Salmonella typhimurium LT2 # 1 283 1 283 283 503 93.0 1e-142 MATQLQDGNTPCLAATPSDPRPTVLVFDSGVGGLSVYDEIRRLLPDLHYIYAFDNVAFPY GEKSEEFIVERVVEIVTAVQQRYPLALAVIACNTASTVSLPALREKFAFPVVGVVPAIKP AARLTANGVVGLLATRATVKRSYTHELIARFANECQIAMLGSAELVELAEAKLHGETVSL EELRRILRPWLRMSEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLE HEAPDATSTDENVAFCMAMTTEAEQLLPVLQRYGFKTLEKLAV >gi|283548477|gb|GG730300.1| GENE 201 226151 - 226360 66 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSGGTTALQPPGKFFVLCTQYFIASAALAALANVSHILPYAPSVASFAALPLRKLLRTA ICNQAENTS >gi|283548477|gb|GG730300.1| GENE 202 226837 - 228546 607 569 aa, chain + ## HITS:1 COG:VCA0103 KEGG:ns NR:ns ## COG: VCA0103 COG0659 # Protein_GI_number: 15600874 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Vibrio cholerae # 2 553 9 558 592 580 57.0 1e-165 MVLNYMPGLKNLLAYDKSWLKHDVKAGLSVAAVALPVAIAYAELAGVGAIVGLYSCVLPM LAYALFGSSRQLIVGPDATTCAVIAAVVVPLSAGNPELHWQLTIVMTLMMGGWCLLASKF RLGALADLLSHPILTGLLNGVAVTIIVGQLGKVLGITLNEEQVIEKIIALPGRLSEVHLL TLGISILTLAILMAIKTFRSQWPAPLIAIVITTALVWATSAQQYGIATIGGSGFQSGLPV VHWGSFQPGLARDLLIPALNLALVSFVSLMLTARSFAAKNGYEINADAEFRALGVANLMS GLSQGFAISGADSRTAVNDSTGGKSQLVSVVAALIIGMVVVFFTQPLQFIPVSALGIVLI YASWSLIDLRGLWNLRRRNKPAFRLAFFTFGCVLIVGVLQGIGLAVLLGLLQFLRTVFRP TEHLLGTDENGMIHSLGNSTDINMIPGVLMYRFNSPLTYFNVAYFKRRVLNLVDGAVHQP RWVVIDAVSCFTYPDISVLATINELKRELKGRQIKLILAGRKTELTRWFKESRPTMKDDD IILVPDLYLALRFIQSKESMSEAESGVVG >gi|283548477|gb|GG730300.1| GENE 203 228498 - 228701 96 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLNVPESGHHYLEEPAYGRFFAFGLQSISDCFDNSYPSPISAIQPEHFFNLVYPTTPDSA SLMLSLL >gi|283548477|gb|GG730300.1| GENE 204 229348 - 230403 -8 351 aa, chain + ## HITS:1 COG:NMA0427 KEGG:ns NR:ns ## COG: NMA0427 COG0270 # Protein_GI_number: 15793432 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 1 339 6 345 351 204 35.0 2e-52 MKVIDFFCGCGGASKGFELAGFDIALGIDFDKSAADSYKANFPNTAFINSDIRNVRVRDI AEIVPDWKENDLIFCACAPCQPFSSQNKKRDSADTRRSLLSETKRFIRAFRPKYIFIENV PGIQSVKLTENGPFADFLSFLTRFDYQYEYHVISSEFYGVPQQRKRLVVLAKLHGSPAFP TPTHGEQGKPFATVRDYIGQLPRLQAGEADPEDPLHTAAIIEPLNIERLQCTPEGGDRRD WPKRLWLKCHKDYDGHTDVYGRMKWDEPCKTLTTKCTSISNGRFGHPDTTQHRAITFREA ALLQTFPIDFQFEGNRVSKSKQIGNAVPVLLAKCFAEAMWKQHNDEMEGDS >gi|283548477|gb|GG730300.1| GENE 205 230462 - 232801 461 779 aa, chain + ## HITS:1 COG:no KEGG:ECP_4571 NR:ns ## KEGG: ECP_4571 # Name: not_defined # Def: G-X-G motif; other site # Organism: E.coli_536 # Pathway: not_defined # 1 761 13 762 986 734 50.0 0 MLGRQQIAGIPTALSELFKNAHDAYADNVEVDYIRKRNLLILRDDGLGMTREEFEERWLT IGTDSKFIDEDSIGLPEVDTAKTARPIMGEKGIGRLAIASIGPQVLVLTRSRKNDILGNI VAAFVNWSLFSLPKLNLEDINIPIIELNPGEILQKIHIDNLLNEALANINSLKGKISQKK IDSLIVQVSMFDYDPEYWTNNLNNQDNNLGLKREHLSLDGEHGGTHFIIAPVDDVLNDDI EGFATARRTDQISRLQKSLLGFTNTMYENSHPPIIARFRDHTLHGECIDRISESVFFTPD EFAIADHHFQGVFNEFGQFAGTVRIYGEEKQVVVPWPEGNNKEILCGTFRLNLAYIHGVQ RDSRVSPDIWQELRDKTDRIGGLYIYRDGIRILPYGDSDVDFLRIEQRRSKSAKEYFFSY RRMFGAVELTKENNSELKEKAGREGFIENKAYKQLKSVLENFFIQVAADYFRDKGEQSAT FIETRARQQREYDLLKKREGYKNSKRKIFSESLDKFFKKSDAGLWEQEIEDIADKANIVL DNFSPEHSTIDDLVFNVENIRIDSFGKLINNININKPTGIGLSKDLAEQWDTYQMTKNKI LDKIEEKKNIISRRLVDYEDRYGDRTGLRRRFNDSLASLENYQRKQLNDVYNKANKVLDE LQQQTRQLLNQSREQAKLETASVIRDFNSTSFQGVTTDQLFKIKKDLEMRIDDSSKSILE SIGIIIDRLLAAKEGSEQNVTSSTELVSIIETEYEHLKDQHEKKPSAGSVRNGFGCSGA >gi|283548477|gb|GG730300.1| GENE 206 232743 - 233429 173 228 aa, chain + ## HITS:1 COG:no KEGG:ABBFA_000086 NR:ns ## KEGG: ABBFA_000086 # Name: not_defined # Def: histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein # Organism: A.baumannii_AB307-0294 # Pathway: not_defined # 2 217 761 977 985 250 53.0 4e-65 MKKNLQLAQLGMALGVLGHEFNNNILSIRRGLNEMQPFASRSERFKVIYERVRTGFEHLD AYLKTLMPLTRRMGRRRTQITGKALSEFIISVFEERLEKESIELNFTARFYSQSVTTFTS TLYPVFINLIDNAIHWLIKSTGDKIITLDATDKGFIIQDSGPGIPAIDHQNVFEFGFSRR IGGQGMGLYIARQTLEQDDFEIILEPYSPDSGAVFRIEPKQNKEIDME >gi|283548477|gb|GG730300.1| GENE 207 234949 - 235143 121 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085948|ref|ZP_06354479.2| ## NR: gi|291085948|ref|ZP_06354479.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 64 393 456 456 128 98.0 1e-28 MTNTVKAVNDGDDYKIIYKINDAQEDSLIWFGELKANVAQAIANKLAEQISRVGLDTNEW LRRH >gi|283548477|gb|GG730300.1| GENE 208 235339 - 235542 196 67 aa, chain + ## HITS:1 COG:no KEGG:KPN_04117 NR:ns ## KEGG: KPN_04117 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 66 1 66 67 81 65.0 1e-14 MKTTYGQPDAWELVDRSRVLVSVMLENPDEVGPNFVMLMIFRDQIQMLHGVFEEAEVRRI RDEKLPL >gi|283548477|gb|GG730300.1| GENE 209 236364 - 237248 680 294 aa, chain + ## HITS:1 COG:YPO1092 KEGG:ns NR:ns ## COG: YPO1092 COG0582 # Protein_GI_number: 16121393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 1 291 4 293 298 323 60.0 3e-88 MGMLMQEMSRLARQAGGSNKTVHDRLALAQRFCERLVVVQNIQIRQVAQLKARHIEEYIR ERLAQGIARRSLQNEMAAIRSLLVQAGRDKLAVSERISNRAQGLAGAPRTGTHWAIPVAY YRQVLETARAKDAGLAAELELSRLMGLRSQEAVQSVQSLKTWRQAIERGEPRLTVVFGTK GGRPRETRILNTDAVRKALDNAIAVAESRNGRLIDKPDLKTAMKYWHSQASRIGLTGAYS PHSLRYAWAQDAIRHYLAQGFSEKEALAQTAMDLGHGDGRGQYIRLVYCRESEL >gi|283548477|gb|GG730300.1| GENE 210 237190 - 237384 57 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTDADNTSVWFIAGRVSYNGRGVRGLTLMYSGIAHFPQKTLATRVWCVWCHHNVPTRLI HYQG >gi|283548477|gb|GG730300.1| GENE 211 237389 - 238090 438 233 aa, chain + ## HITS:1 COG:RSc1362 KEGG:ns NR:ns ## COG: RSc1362 COG1011 # Protein_GI_number: 17546081 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Ralstonia solanacearum # 8 202 3 203 233 71 28.0 1e-12 MTDQTRKSITTLFFDVNETLLDIQPLKQFLVDNLSATPEVADAWFTSLLHFSLVDAISGN WHPFGDIAEAVLAMTAGKYGLKPGHVSGTISEALATLPAHADVPAGLESLKYAGLKLVAL SNSSQSLVERQLTYAGIRPFFDDVLSVANLRTYKPDLTVYQWALRTQGAQAEQAMMVAAH GWDVGGAKLAGLKTAFVARPGQQLYPLAPEPDLVVADVSLLPEALATLSRAEM >gi|283548477|gb|GG730300.1| GENE 212 238159 - 238503 172 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834744|ref|ZP_06354485.1| ## NR: gi|283834744|ref|ZP_06354485.1| transcriptional regulator, LuxR family [Citrobacter youngae ATCC 29220] transcriptional regulator, LuxR family [Citrobacter youngae ATCC 29220] # 1 114 280 393 393 230 100.0 3e-59 MLMLSDPFRAIHSEPALLCELFDLTHREADIAIQLGNGDKPADIAIQDGVSINTVKSQRN SIYEKMGIRSQMQLIRLIHSLGVLTETNIQTADEDTGLLPSALRLFSSPVKTRH >gi|283548477|gb|GG730300.1| GENE 213 239359 - 240594 801 411 aa, chain - ## HITS:1 COG:XF1728 KEGG:ns NR:ns ## COG: XF1728 COG2814 # Protein_GI_number: 15838329 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Xylella fastidiosa 9a5c # 26 402 65 441 447 251 41.0 1e-66 MDNFVSPSPDKPGNIPEKYTVSGHHLPWSGLVALAMACFVTMLTEAMPAGLLLWISPDLG VSVSYSGQLVTLYAVGTLISAIPLVSLTQSMRRKPLLLVAIVGLVIINIITAFSHNYVLT LIARFFGGIFAGLVWSLAAGFAIRMSPPHLAGRAIAIAMLGTPLALTIGIPAGAYLAEFI GWRSDFMMMSALTVILVAWIMVSVPDSPGAENDSSHLTLLQVAKVKGLIAVLFVTLTFIL AHNTLFTYVASFFAHAGLSDNIDLVLLVFGVAALAGVWCAGITVDRWPRKSMLASIAVFS VSILCLVFVRQHGVIYVSVAAWGLAFGGAPTLLQAALAKTAGNAIDVAQSMMVTVWNVAI SGGGLLGGILLGRLGIQSLPFTVEGLLILTFVVAFNARQYGFTDVRKDPDK >gi|283548477|gb|GG730300.1| GENE 214 240970 - 242382 950 470 aa, chain - ## HITS:1 COG:PA1262 KEGG:ns NR:ns ## COG: PA1262 COG0477 # Protein_GI_number: 15596459 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 3 469 6 472 480 356 52.0 6e-98 MKSPSSPGRAGLTLLLAGQLMPSIDTSITNVALDSITRSLNASVTQLELIVALYSVALAI FLAPGSRLGDNAGRRRLFLIGVAIFGGASLACGLAQTVNQLLIARVVQGAGAALIIPQIL ATVHITLEGAAHVRAISLVGGIGGIAFIIGQMGGGWLVSADIAGLGWRNAFFINIPVCLI VLLFGRRYIPETRSDTPSRIDWQGAGLLALALGCLLFSVSLGPELHWPWAMQLMLLAVLP LLYGMHRNALHQQFQERQPLLPPRVLKLPGVGFSILTGLLFFSGWSGFLFCMALMMQSGL GMAPQQAGDSFIAAGVAYFIAALYVPRLTTRYQQRTILLAGLSIQITGLLILIIMLHILG SHTGMLALSIATSTICTGQAFIVNSFYRIGIRNIPAGDAGAGSAILSTILQASMGIGPVL PGGVFLYFLAGNHGNYPQAMAGFLTVEIIMMLTLMVVTLFSRRTVVAVPG >gi|283548477|gb|GG730300.1| GENE 215 242491 - 243357 501 288 aa, chain + ## HITS:1 COG:PA1263 KEGG:ns NR:ns ## COG: PA1263 COG1396 # Protein_GI_number: 15596460 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 11 284 43 314 314 254 51.0 9e-68 MINSEPQFQTQEENRKALGAFLRNRRESLEPQHLGLPPAGRRRTAGLRREEVAMLADIGV TWYTWLEQGRDIRPSARTINAIAEVLQCSPAETRHLFLLSGLVPEETAEAKACESVSPEA RCLLEALMPQPACLQMPNFDLVGYNRSFCHLVGVDLDLLAPEDRNCIYLWLTNATWRGRH VCTEDIVLQNFVAYFRAGMVEHRGEPRWEALLARFFAASPEFEMLWHQLHDVGTIENRRK TFVHPRLGQFSLQQMYWYSAPRNGARLLVYLPVDEAGERALASLAQEI >gi|283548477|gb|GG730300.1| GENE 216 244055 - 245317 403 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 34 400 43 401 406 159 31 2e-37 MLTDTRIRTAKSLDKSYKLTDTHGLYLMVSTTGSRLWYFRYRFAGKESRLAFGAYPQVTL AEAREKRDAARKLLASDISPSQLRKTEKSPVDDSRTFKFIATEWHTNNLVRWSEGHADKI LICLKRYVFPDIGAMDITRIETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQRGL IRYNPAFDLDDVVTPVVTRHHPALPLKRLPELLEKIDGYKGRVLTRLALELNLHVFLRSS ELRLARWDEFNLKARIWTVPAQREAVKGVRFSERGSKMKDEHLVPLSSQAVTLLEQIKEM SGEAAFVFPGAHSLDKPMSENTINKALRVIGYDTKTEICGHGFRTMACSALNESALWSKD AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDVSREGYVAPYIYARQHKLAS >gi|283548477|gb|GG730300.1| GENE 217 245663 - 247681 879 672 aa, chain - ## HITS:1 COG:no KEGG:ROD_31971 NR:ns ## KEGG: ROD_31971 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 668 1 672 674 928 67.0 0 MRLVHCILLAGFVSAPLYARPLTGFSFAHKDWEVACDNTGTCRAAGYSDHAVSALLTRPA GADTNVYVEVAFAQRTMDQPPLKDAMLFINGKKQGTLTVNAEGYSRLDDQLREVFLDALR QDNTIEFAADGERIPLSTAGSNAVLLKMDEFQKRISTRSALLHPGDKDNDAVLQAEPTPL IITHPTIDAPDIAPLTTAQRHKIEPQIRFTPEMNCRELAEGRQRIYYRIPVDKKHVLIQT ECFDTSRFALWLTNSEFTAPPVLITSDASEYENGEIARFSGPIQHWVWNGNNFTLRDEYR SGGQGDLSVGGVWTLPTFVSNIRSQSDVDMDSAALKTLRSAVERMQKTTPGFDLSKITSQ FPLTGQITDFRISYAEDSAPPTTKPSPEISDDEWRAFSRSSISADSELGYVNFTLVDLDG DGKRDLIINSYVGGTGLFSYTGVLKRGGDKFFAVNEDPYSDDFGVSGALYSENGRGANQW GQWVRINGQIYALWLNGIYGEDNLYLLRPFSADDKIPFVTVRYRYEYNTDSIEPREEGQP LTPKLDTKDKTKLINALNKMQSMYSKNQPASYSVSPICPIPDGTPPEKAENYSTGIAGNY TSEPVAVIPVWVNGECLIGSVESYFGREEFITLLSPKDQDIVGEFSVAGRRHVASIKSGK APREGDNGVPLF >gi|283548477|gb|GG730300.1| GENE 218 247749 - 248324 674 191 aa, chain - ## HITS:1 COG:ECs5116 KEGG:ns NR:ns ## COG: ECs5116 COG1309 # Protein_GI_number: 15834370 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 191 9 199 199 347 90.0 1e-95 MQREDVLGEALKLLEVQGIANTTLEMVAERIDYPLDELQRFWPDKEAILYDALRYLSQRV DIWRRQLLLDETLSAEQKLLARYSALSECVSNNRYPGCLFIAACTFYPDPGHPIHQLADQ QKKAAHDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRMLVNRSHADVETAHRLAEDILR FAQCRMGGALT >gi|283548477|gb|GG730300.1| GENE 219 248361 - 250070 1472 569 aa, chain - ## HITS:1 COG:STM4323 KEGG:ns NR:ns ## COG: STM4323 COG4232 # Protein_GI_number: 16767572 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Salmonella typhimurium LT2 # 1 569 1 567 567 976 88.0 0 MAQRILTLILLLCSTSTFAGLFDAPGRSQFVPADRAFVFDFQQNQHDLNLSWQVKEGYYL YRKQISITPSQADIAEVKLPPGVWHEDEFYGKSEIYRKQLTIPVTVNQAKSGATLTVTYQ GCADAGFCYPPETKTVPLSEVSADAGTTSAPAPVTVVPQENPQPAAQLPFSALWALLIGI GIAFTPCVLPMYPLISGIVLGGRQRLSTGRALLLTFIYVQGMALTYTALGLVVAAAGLQF QAALQHPYVLIGLAVIFTLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSPGSVFAMGA IAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRLLPKSG PWMEHVKTAFGFVILALPVFLLERIIGDEWGVRLWSLLGVAFFSWAFITSLQAKHAWMRI VQIILLAAALVSVRPLQDWAFGTPYAQTQTHLNFTPVASVDALNQALAQAKGKPVMLDLY ADWCVACKEFEKYTFSNPQVQQALGDTVLLQADVTANNAQDVALLKHLQVLGLPTILFFD AEGKEHPEARVTGFMDAATFSAHLRDRQP >gi|283548477|gb|GG730300.1| GENE 220 250046 - 250393 273 115 aa, chain - ## HITS:1 COG:STM4324 KEGG:ns NR:ns ## COG: STM4324 COG1324 # Protein_GI_number: 16767573 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tolerance to divalent cations # Organism: Salmonella typhimurium LT2 # 1 115 1 115 115 199 93.0 2e-51 MLDVKSQDISIPDTVVVLCTAPDEATAQDLAAKALAEKLAACVTLLPGATSLYYWEGKLE QEYEVQMILKTTVPHQQALLDCLKSHHPYQTPELLVLPVTHGDFDYRSWLNASLR >gi|283548477|gb|GG730300.1| GENE 221 250522 - 251823 1285 433 aa, chain - ## HITS:1 COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 433 1 433 433 671 94.0 0 MIVLELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAI SAMQIAGGLDYLVHQTEKLLRKNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAK EQGIKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYIHLLSVVIPSTLLAVL VMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGERQVEIKAGAKTSVWLFLLGVVCVVVY AIVNSPSLGLVATPLMNTTNAILIIMLSIATLTTIICRVETDAILNSSTFKAGMSACICI LGVAWLGDTFVSHNIDWIKDTAGSVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALA LNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVVL AVCFGFLLGGFML >gi|283548477|gb|GG730300.1| GENE 222 251938 - 253374 1417 478 aa, chain - ## HITS:1 COG:ECs5120 KEGG:ns NR:ns ## COG: ECs5120 COG1027 # Protein_GI_number: 15834374 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Escherichia coli O157:H7 # 1 478 16 493 493 905 96.0 0 MLNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAM ANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLE LMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYASIIKLIDALNQLREGFEKKADE FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIGRTAELLLEVNLGATAIGTGLN TPKEYSPLAVKKLAEVTGFACVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDITVTMASEAGQLQ LNVMEPVIGQAMFESIHILSNACYNLLEKCVSGITANKEVCEAFVYNSIGIVTYLNPFIG HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESEQ >gi|283548477|gb|GG730300.1| GENE 223 253712 - 254188 310 158 aa, chain + ## HITS:1 COG:STM4327 KEGG:ns NR:ns ## COG: STM4327 COG3030 # Protein_GI_number: 16767576 # Func_class: R General function prediction only # Function: Protein affecting phage T7 exclusion by the F plasmid # Organism: Salmonella typhimurium LT2 # 1 158 14 171 171 244 94.0 4e-65 MRWIPLLAIFLYVYIEISIFIQVAHVLGVLMTLILVIFTSVIGMSLVRNQGFKNFLLMQQ KMAAGESPAAEMIKSVSLIIAGLLLVLPGFFTDFLGLLLLLPPVQKHLTMKLLPHLRFSR MPGGGFSAGTGGGETFDGEFQRKDEHRDSIEHKDDRRD >gi|283548477|gb|GG730300.1| GENE 224 254238 - 255503 1103 421 aa, chain - ## HITS:1 COG:ECs5122 KEGG:ns NR:ns ## COG: ECs5122 COG0531 # Protein_GI_number: 15834376 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 1 421 1 416 418 622 87.0 1e-178 MSGLKQELGLAQGVGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPILIVLVFPVAIVFA VLGRHFPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPAALHIAAGFGQAMFGWHDE QLLLAELGTLALVWYIGSRGASSSANLQTVIAGLIVALIVAIWWTGDLKPGEIPFPAISE IELPGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGSVYWACTVVVL HFGAYGEKMAAAASLPEIVVQLFGVQALWVACIIGYLACFASLNIYIQSFARLVWSQAQY KPESYLARLSPRHLPRNALNAVLGCCVVSTLCIYMLQINLDALIVYANGIFIMIYLLCML AGCRLLKGHYRALAVVGGLLCLLLLAMVGWKSLYALIMLAALWLFLPRRPDKSTLTPSSG I >gi|283548477|gb|GG730300.1| GENE 225 255779 - 256072 405 97 aa, chain + ## HITS:1 COG:STM4329 KEGG:ns NR:ns ## COG: STM4329 COG0234 # Protein_GI_number: 16767578 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Salmonella typhimurium LT2 # 1 97 1 97 97 157 100.0 5e-39 MSIRPLHDRVIVKRKEVESKSAGGIVLTGSAAGKSTRGEIIAVGKGRILDNGTVQPLDVK VGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA >gi|283548477|gb|GG730300.1| GENE 226 256116 - 257762 2374 548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 1 548 1 547 547 919 87 0.0 MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGI DKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDG TGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTV ISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGDEAAIQGRVTQIRQQIEEATSDY DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALI RVASKIAGLKGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKAGDGNYGYNA ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKGDAPDLGAAGGMGG MGGMGGMM >gi|283548477|gb|GG730300.1| GENE 227 258850 - 260547 1083 565 aa, chain + ## HITS:1 COG:MA3645 KEGG:ns NR:ns ## COG: MA3645 COG3344 # Protein_GI_number: 20092445 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Methanosarcina acetivorans str.C2A # 19 495 36 504 512 400 44.0 1e-111 MNTGTRVESQAVSASSHPERWHAINWRKTSEAVRKLQVRIAKAAQQQEWRRVKALQRMLT RSLAAKALAVRRVTENRGKDTPGVDGKLWNTPKTKWEAIFDMKRTGYHPKPLRRVYIQKS NGKLRPLGIPTMRDRAMQALYLLALEPVSETTADRNSYGFRPMRSTADAIEQCFVALSRG NSAQWVLEGDIKGCFDNISHDWLLAHIPMDKQVLGKWLKAGYMESGHYHATGAGTPQGGI ISPVLANMALDGLEAVLESRFGVKNTKASYKTKVNYVRYADDFIITGISQELLENEVKPL VEAFMAERGLQLSPEKTVITHIEQGFDFLGQNVRKYRGKMLIKPSRKNLRTFLAKVRDIV KRHPTQTQDWLIRQLNPALRGWANYHRHVVAKETFSYVDYRVWKLLWRWCCRRHKNRNKR WVKDKYFHTVNNRRWTFQWREDKENPVTLVYAKDTVIKRHTKIKAEANPYLPEWEPYFEQ RLERRWKETMQGRKKLLALWLRQEKRCPLCNQLITLETGWHVHHKYQKHLGGGDELENLV MLHPGCHIQWHVNEEKDAQPVQPVG >gi|283548477|gb|GG730300.1| GENE 228 260890 - 261243 322 117 aa, chain + ## HITS:1 COG:no KEGG:SG4174 NR:ns ## KEGG: SG4174 # Name: yjeI # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 117 7 123 123 190 94.0 2e-47 MHVKYLAGIVGAALLMAGCSSSNELSSAGQSVRFVEDKPGAECQLIGTATGTQSNWLSGQ HGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPSQGMLSSFVPTASEMTGQVYKCPN >gi|283548477|gb|GG730300.1| GENE 229 261331 - 262194 761 287 aa, chain - ## HITS:1 COG:no KEGG:CKO_03689 NR:ns ## KEGG: CKO_03689 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 287 1 287 287 426 75.0 1e-118 MAISIKGINAGIIRQKNEFVALALKIKEPRNKESLFFLSPLGLRDLLIALESRLHAKHQL SEDARLQYEKERDKASKKMHENIPLIQEDELKNADINRRINSLMLVDDKGENLAFSLTLH DGQTYELLINELQIQVLVHVIIHAINNAGMQELALRITSLLDFLPLYDVDCQQNDNLEYD SYTQPEWKHNLFNHYLAIIYSYKDEKGKAQFCGSVVKTRALSGSKEAEAITRRLLDFSPR LKKLVGVPCQVFVRTLTGDKTQKLNQDQCLRALHHLRVQSAQKAPNA >gi|283548477|gb|GG730300.1| GENE 230 262417 - 264135 771 572 aa, chain - ## HITS:1 COG:no KEGG:PFL_1098 NR:ns ## KEGG: PFL_1098 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens # Pathway: not_defined # 68 541 158 666 708 320 40.0 1e-85 MQDHDSPFASTENAARYLSQLSMPLTDADIMQLTALHRLGEANWSAGVIARHLGNTALQQ WLGVMNAHYSSEPFTQSEIARFPQLGQQACFALAGAHVHFYHHHTDPAVVLSEDDAYCQF AQETLLAAKNHLIAIHSAQIPYAADKAFTPAEAQVISRCARVAALRYNDDTGLLLSTLLQ LTSFAPGTAKTVPSQSLSIALGHAIQAYPLPETLQALAETILTIRHAGVKKKLERNLKPA QRALAERPELALKMSTQLMPGKKSTMLLANCLEAGYVLGSRFAWPVWCEQLLNSNAGSKL AQNLIWQALPPEGQPFTFMVDKKGYHDAQGQKLSEPAGCAIRLWHPLYTAAEERKCWQQR IQMQKITQPLRQAFREIGYTLNSAEFAGYWLSLSPFTALARKEGWHLDYERIVRRFGPWR VQFAVATNLYPGAIGSGLSGEITVYSEASSSVTLDSLPPVVFSEIMRAIDLLISITALSA HTTNENLFTDVSDAITSRKKSLSQHFESEIANGKLVLDTHHARAGDRAVHLVSMLETHSG QVMPLPAPRVLTKDDDFILCHLIATIEAWFKE >gi|283548477|gb|GG730300.1| GENE 231 264159 - 265187 775 342 aa, chain - ## HITS:1 COG:ECs5127 KEGG:ns NR:ns ## COG: ECs5127 COG1509 # Protein_GI_number: 15834381 # Func_class: E Amino acid transport and metabolism # Function: Lysine 2,3-aminomutase # Organism: Escherichia coli O157:H7 # 1 341 1 341 342 634 91.0 0 MAHIVTLNTPSREDWLSQLADVVTDPDELLHLLNLDADEKLLAGRDARRLFALRVPRAFI ARMEKGNPDDPLLRQVLTAQQEFVAEPGYSTDPLEEQHSVVPGLLHKYRNRALLLVKGGC AVNCRYCFRRHFPYAENQGNKRNWQVALDYINAHPELDEIIFSGGDPLMAKDHELDWLLT QLEAIPHIKRLRIHSRLPIVIPARITEGLADRFAHSSLQILLVNHINHANEVDETFRQAM VRLRTAGVTLLNQSVLLRGVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSD DEARQIMRELLTLVSGYMVPKLAREIGGEPSKTPLDLQLRQS >gi|283548477|gb|GG730300.1| GENE 232 265229 - 265795 603 188 aa, chain + ## HITS:1 COG:ECs5128 KEGG:ns NR:ns ## COG: ECs5128 COG0231 # Protein_GI_number: 15834382 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 363 94.0 1e-100 MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTD SAEGADVADMNLTFLYSDGEFWHFMNNTTFEQLAADEKAVGDNAKWLLDQAECIVTLWNG QPISVTPPNFVELEVIETDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRS GEYVSRVK >gi|283548477|gb|GG730300.1| GENE 233 266094 - 266240 90 48 aa, chain + ## HITS:1 COG:STM4336 KEGG:ns NR:ns ## COG: STM4336 COG5510 # Protein_GI_number: 16767585 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Salmonella typhimurium LT2 # 1 48 1 48 48 62 91.0 3e-10 MIKKTIAAIFSVLVLSSVLTACNTTRGVGEDISDGGNAISGAATKAQQ >gi|283548477|gb|GG730300.1| GENE 234 266271 - 266645 245 124 aa, chain - ## HITS:1 COG:STM4337 KEGG:ns NR:ns ## COG: STM4337 COG2771 # Protein_GI_number: 16767586 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 2 122 77 193 195 131 57.0 3e-31 MSCGVIPLILLQSADRQHAPIATSQSLAHSVLTKHTSLNALSHTIQEALQDRPTLELAEH TTPLLTPQEEKVLSMWMDGVSNNAIAAALSIHGKTVYTYKRNIRMKLHLGNRFSPFLSLP MKEN >gi|283548477|gb|GG730300.1| GENE 235 267127 - 267444 493 105 aa, chain + ## HITS:1 COG:ECs5129 KEGG:ns NR:ns ## COG: ECs5129 COG2076 # Protein_GI_number: 15834383 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Escherichia coli O157:H7 # 1 105 51 155 155 141 80.0 3e-34 MSWIVLLVAGLLEVVWAIGLKYTHGFTRLTPSIITIAAMIVSIAMLSWAMRTLPVGTAYA IWTGIGAVGAAITGILLLGESASPARLLSLGLIVAGIVGLKLSTH >gi|283548477|gb|GG730300.1| GENE 236 267441 - 267974 603 177 aa, chain - ## HITS:1 COG:STM4339 KEGG:ns NR:ns ## COG: STM4339 COG3040 # Protein_GI_number: 16767588 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Bacterial lipocalin # Organism: Salmonella typhimurium LT2 # 1 177 1 177 177 358 94.0 3e-99 MRILPVVAAVTAAFLVVACSSPTPPKGVTVVNNFDAKRYLGTWYEIARLDHRFERGLEKV TATYSLRDDGGINVINKGYNPDREVWQKTEGKAYFTGDPNRAALKVSFFGPFYGGYNVIA LDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFDVNKLIWVKQPGA >gi|283548477|gb|GG730300.1| GENE 237 268068 - 269213 1136 381 aa, chain - ## HITS:1 COG:ampC KEGG:ns NR:ns ## COG: ampC COG1680 # Protein_GI_number: 16131975 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Escherichia coli K12 # 2 381 1 377 377 575 75.0 1e-164 MMKKSLCCAWLLTASFSTFAAAKTEQQIADIVNHTITPLMQEQAIPGMAVAIIYQGKPYY FTWGKADIANDRPVTRQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTQYWPELTGKQ WQGISLLHLATYTAGGLPLQVPDDVTDKAALLRFYQNWQPQWALGAKRLYANSSIGLFGA LAVKPSAMRYEEAMTRRVLQPLKLTHTWITVPQSEQKDYAWGYREGKPVHVSPGQLDAEA YGVKSSLVDMTRWVQTNMDASQVQEKTLRQGIEIAQARYWRIGDMYQGLGWEMLNWPVNP NSIINGSDSKVALAALPAVEVNPPAPAVKASWVHKTGSTGGFGSYVAFVPEKNLGIVMLA NKSYPNPARVEAAWRILEKLQ >gi|283548477|gb|GG730300.1| GENE 238 269345 - 270220 606 291 aa, chain + ## HITS:1 COG:PA4109 KEGG:ns NR:ns ## COG: PA4109 COG0583 # Protein_GI_number: 15599304 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 285 1 285 296 340 60.0 2e-93 MTRSYIPLNSLRAFEAAARHLSFTRAAIELNVTHSAISQHVKALEQQLNCQLFVRGSRGL MLTTEGESLLPVLNDSFDRMAAMLDRFATKQTQEKLKIGVVGTFAVGCLFPLLSDFKRSH PHIDLHISTHNNRVDPAAEGLDYTIRYGGGAWHDTDAQYLCSALMSPLCSPELASQIKSP ADILKFPLLRSYRRDEWTLWMQAAGEAPPSPTHNVVVFDSSVTMLEAAQTGMGVAIAPVR MFTHLLGSKRIIQPFLTQIDLGSYWITRLQSRPETSAMRDFSRWLAGALHK >gi|283548477|gb|GG730300.1| GENE 239 270262 - 270618 466 118 aa, chain - ## HITS:1 COG:ECs5132 KEGG:ns NR:ns ## COG: ECs5132 COG3080 # Protein_GI_number: 15834386 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit D # Organism: Escherichia coli O157:H7 # 1 118 1 119 119 193 92.0 5e-50 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGIMLPLGFVPDAFSYERVLAFAQS FIGRAFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTAIGILTI >gi|283548477|gb|GG730300.1| GENE 240 270629 - 271024 464 131 aa, chain - ## HITS:1 COG:ECs5133 KEGG:ns NR:ns ## COG: ECs5133 COG3029 # Protein_GI_number: 15834387 # Func_class: C Energy production and conversion # Function: Fumarate reductase subunit C # Organism: Escherichia coli O157:H7 # 1 131 1 131 131 207 90.0 3e-54 MTTKRNAYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKHGVESWAGF VGFLQNPVVVILNIIALAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKGLWAVTVVA TVVILFVALFW >gi|283548477|gb|GG730300.1| GENE 241 271035 - 271769 940 244 aa, chain - ## HITS:1 COG:STM4342 KEGG:ns NR:ns ## COG: STM4342 COG0479 # Protein_GI_number: 16767591 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Salmonella typhimurium LT2 # 1 244 1 244 244 505 97.0 1e-143 MAEMKNLKVEVVRYNPETDTAPHSAFYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRM AICGSCGMMVNNVPKLACKTFLRDYTNGMKVEALGNFPIERDLVVDMTHFIESLEAIKPY IIGNPRTPDQGPNTQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRY NEDSRDHGKKERMAQLNSPNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIAT LKPR >gi|283548477|gb|GG730300.1| GENE 242 271762 - 273552 1865 596 aa, chain - ## HITS:1 COG:STM4343 KEGG:ns NR:ns ## COG: STM4343 COG1053 # Protein_GI_number: 16767592 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Salmonella typhimurium LT2 # 1 596 1 596 596 1141 97.0 0 MQTFQADLAIIGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH DSFDYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLEQWGCPWSRREDGSVNVRRFGGM KIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDTLVDDGHARGVVAMNMMEGT LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGS GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWR KGNTISTPRGDVVYLDLRHLGEKKLLERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMG GIETDQHCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRMAGEQAAERAATAGA ANGAALDAQVAGIEKRLKDLVNQEGNENWSKIRDEMGISMEEGCGIYRTPELMQKTVDKL AELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSALARKESRGAHQRLDEGC TERDDVNFLKHTLAFRDADGTTRLEYSDVKITTLPPAKRVYGGEAEAADKKEKANG >gi|283548477|gb|GG730300.1| GENE 243 273877 - 274854 1062 325 aa, chain + ## HITS:1 COG:STM4344 KEGG:ns NR:ns ## COG: STM4344 COG2269 # Protein_GI_number: 16767593 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Truncated, possibly inactive, lysyl-tRNA synthetase (class II) # Organism: Salmonella typhimurium LT2 # 1 325 1 325 325 635 95.0 0 MSETATWQPSASIPNLLKRAAIIAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRF VGPGHSQGMNLYLMTSPEYHMKRLLVAGCGPVYQLCRSFRNEEMGRHHNPEFTMLEWYRP HYDMYRLMNEVDDLLQQVLDCSPAESLSYQQAFQRHLEIDPLSADKTQLREVAAKLDLSN IADTEEDRDTLLQLLFTMGVEPHIGKDKPTFVYHFPASQASLAQISTEDHRVAERFEVYY KGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQQPIDNNLLEALKVGMPDCSGVALG VDRLVMLALGAESLAEVIAFTVDRA >gi|283548477|gb|GG730300.1| GENE 244 275067 - 276569 1327 500 aa, chain + ## HITS:1 COG:yjeM KEGG:ns NR:ns ## COG: yjeM COG0531 # Protein_GI_number: 16131981 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli K12 # 1 500 15 514 514 792 88.0 0 MTQTIKKMSLIGLILMIFTSVFGFANSPSAFYLMGYSAIPWYIFSALLFFIPFALMMAEM GSAYRKEEGGIYSWMNNSVGPRYAFIGTFMWFSSYVIWMVSTAAKVWVPFSTFLFGADMT QHWHFAGLEPTQVVGLLAVGWMILVTCVASRGINKIARITAVGGIAVMCLNLVLLLVSVA ILLLTGGHFAQDINFTSSPNPGYQSGLAMLSFVVFAIFAYGGIEAVGGLVDKTEKPEKNF AKGIVFAAIVISVGYSLAIFLWGVSTNWQQVLSNSSVNLGNITYILMKSLGMTLGNALHL SPEAAVAMGVWFARITGLSMFLAYTGAFFTLSYSPLKAIIQGTPKALWPAPMTRLNAVGM PTTAMWLQCLLVSLFILLVSFGGDTASAFYNKLTLMANVSMTLPYLFLALAFPFFKARAG LERPFVIFKTRAATLLTTGVVVLVVTFANVFTIIQPVIEAGDWNSALWMIGGPIFFSLLA MAIYQNYSRRMANEPEWAVE >gi|283548477|gb|GG730300.1| GENE 245 276663 - 279977 3527 1104 aa, chain - ## HITS:1 COG:STM4347 KEGG:ns NR:ns ## COG: STM4347 COG3264 # Protein_GI_number: 16767596 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Salmonella typhimurium LT2 # 1 1104 1 1108 1108 1882 92.0 0 MRLIITFLMAWCLSLGAYAATAPDAKQLTQELEQAKAAKPAQPETVEALQSALNALEERK GSLERATQYQQVIDNFPKLSATLRAQLSNLRDEPRNVPTGLTTDALNQEILQVSSQLLEK SRQAQQEQDRAREIADSLSQLPQQQTDARRQLNELERRIGTANANPAQNQAMQAESAKLK ALVDELELAQLSANNRQELARMRSELAEKQSQQLDAYLQALRNQLNSQRQREAERALEST ELLAENSAGLPEGIVDQFKVNRELSQALNQQAQRMDLVASQQRQATSQTLQVRQALNTLR EQSQWLGVSNMLGEALRAQVSRLPEMPKPQQLDTEMAQLRVHRMRYEDLLNKQPQLRQIH QADGQPLTAEQSSILNAQLRTQRELLNSLLQGGDTLILELTKLKVSNSQLEDALKEVNEA THRYLFWTSDVSPISLSWPVDIVQDLRRLISLDTFNQLGKASIMMLTSKETLLPLFGALV LVGFSLSSRKHFTRFLERSSARVGKVTQDHFWLTIRTVFWSILVASPLPVLWATLGYGLQ EAWPYPLAVAIGDGVTATVPMLWAVMICATFARPNGLFIAHFGWPRNRVAKAMHYYLMSI GLIVPLIMAVIMFDNLNDREFSASLGRLCFILICGALAVVTLSLKRAGIPLYLDKEGNSD NMVNSMLWNMLMGAPLIAILAAAVGYLATSQALLARLETSVAIWFLLLVVYHVIRRWMLI QRRRLAFDRAKHRRAEMLAQRARGEEEPPHSTSLEGAIDVDESEVDLDAISAQSLRLVRS ILMLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIIT TQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLV AALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDR KEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPSEANSEEVTQILLTAAQRCSLVIDNP APEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLE SLGGKQTGRTLSSAGRGSRPAGSL >gi|283548477|gb|GG730300.1| GENE 246 279995 - 280963 968 322 aa, chain - ## HITS:1 COG:ECs5139 KEGG:ns NR:ns ## COG: ECs5139 COG0688 # Protein_GI_number: 15834393 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Escherichia coli O157:H7 # 1 321 1 321 322 620 92.0 1e-177 MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASY RTFNDFFVRPLRDEARPINTDPNVLVMPADGVINQLGNIEEDKLLQAKGHSYTLEALLAG NYQMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMMYVPGDLFSVNILTAQNVPNLFA RNERVICLFDTEFGPMVQILVGATIVGSIETVWAGTITPPREGVIKRWTWPEGESEGSVA LLKGQEMGRFKLGSTVINLFAPGKVNLVEQLQDLSVTKIGQPMAISTETFVTPEAEPAPL AKEEIEAEHDASPLVDDKKDET >gi|283548477|gb|GG730300.1| GENE 247 281056 - 282132 1018 358 aa, chain - ## HITS:1 COG:STM4349 KEGG:ns NR:ns ## COG: STM4349 COG1162 # Protein_GI_number: 16767598 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Salmonella typhimurium LT2 # 1 358 1 358 358 692 94.0 0 MGDQEPVRLSKNKLSKGQQRRVNANHQRRLKTSAEKPDYDDNLFGETAEGIVISRFGMHA DVESADGDIHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDF YDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLHVEPIIVLNKIDLLDDEGMAF VNEQMDIYRNIGYRVLMVSSRTKDGLKPLEEALTGRISIFAGQSGVGKSSLLNNLLGLQE AILTNDVSDNSGLGQHTTTASRLYHFPHGGDVIDSPGVREFGLWHLEPEQITHGFVEFHD YLGHCKYRDCKHDADPGCAIREAVEKGEIAETRFENYHRILESMAQVKTRKNFSDTDN >gi|283548477|gb|GG730300.1| GENE 248 282214 - 282759 755 181 aa, chain + ## HITS:1 COG:orn KEGG:ns NR:ns ## COG: orn COG1949 # Protein_GI_number: 16131987 # Func_class: A RNA processing and modification # Function: Oligoribonuclease (3'->5' exoribonuclease) # Organism: Escherichia coli K12 # 1 181 24 204 204 359 97.0 1e-99 MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDD WNVRTHTGSGLVERVKASTMGDREAELATLAFLQEWVPAGKSPICGNSIGQDRRFLFKYM PELEAYFHYRYLDVSTLKELARRWKPEILAGFTKQGTHQAMDDIRESVAELAYYREHFIK L >gi|283548477|gb|GG730300.1| GENE 249 283810 - 284949 980 379 aa, chain - ## HITS:1 COG:yjeS KEGG:ns NR:ns ## COG: yjeS COG1600 # Protein_GI_number: 16131988 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Escherichia coli K12 # 1 379 1 379 379 736 91.0 0 MSEPLDLNQLAQNIKQWGLELGFQQVGIADTDLSEAEPKLQAWLDQHYHGEMDWMARHGM MRARPHELLPGTLRVISVRMNYLPAHAAFASTLKNASLGYVSRYALGRDYHKLLRNRLKK LGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKHSLILNREAGSFFFLGELLVD LPLPVDKPVAEGCGKCVACMTICPTGAIVEPYIVDARRCISYLTIELEGAIPEEFRPLLG NRIYGCDDCQLICPWNRYSQLTAEDDFSPRKQLHAPELIELFSWSEGWFLKVTEGSAIRR IGHLRWLRNIAVALGNAPWDEAVITALESRRGEHPLLDEHIEWAVAQQIEKRKACVIEVQ LPQKQRLVRVIEKGLPRDA >gi|283548477|gb|GG730300.1| GENE 250 284963 - 286495 1066 510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153825000|ref|ZP_01977667.1| ribosomal protein S15 [Vibrio cholerae MZO-2] # 8 494 3 490 490 415 44 1e-114 MKKNPASIPHSIWHADDIKRMEREAADSLGLTLYELMQRAGEAAFQVAREAYPHAHHWLV LCGHGNNGGDGYVVARLAKAQGLDVTLLAQESDKPLPEEAQQARDAWLNAGGVIHAADIT WPGSADVIIDALAGTGLKFAPRESLSVLIERANTHPAPTVAIDIPSGLLAQTGATPGAVI NAAHTVTFIALKPGLLTGKARDITGRLHVNALGLDDWLVGQNAPIQRFDAQQLANWLTPR RPTSHKGSHGRLVIIGGDHGTAGAIRMAGEAALRAGAGLVKVLTRSENIAPILTARPELM VDTLTPQTLDESLAWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD KRHNRVITPHPGEAARLLGCSIAEIESDRLLCAQRLVKRYGGVVVLKGAGTVVAAEQTEL GIIDTGNAGMASGGMGDVLSGIIGGLLGQKLTPYDAACAGCVAHGAAADVLAARFGTRGM LATDLFTTLQRIVNPDVIDVYHDESSNSTT >gi|283548477|gb|GG730300.1| GENE 251 286467 - 286928 371 153 aa, chain + ## HITS:1 COG:STM4357 KEGG:ns NR:ns ## COG: STM4357 COG0802 # Protein_GI_number: 16767603 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Salmonella typhimurium LT2 # 1 153 1 153 153 303 94.0 6e-83 MMNRVIPLPDEQATLDLGQRVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHKGNVKS PTYTLVEPYSLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWPQQGKGVLPDP DVEIHIEYQAQGREARVSAVSSSGEVLLARLAD >gi|283548477|gb|GG730300.1| GENE 252 286945 - 288276 1113 443 aa, chain + ## HITS:1 COG:ECs5145 KEGG:ns NR:ns ## COG: ECs5145 COG0860 # Protein_GI_number: 15834399 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli O157:H7 # 1 443 1 445 445 723 88.0 0 MIYRIRNWLMATLVLLCAQAGAASLSDLQVSNGDQQARITLSFIGDPEYAVSQDGKRTVA LDIKQTGVIQGLPLLFSGNNLIKSIRSGTPKDAQSLRLLVDLTENGKAEAVKRQNGGNYT VVFTINADAPPPPPPPPVVAKRVEAPVVAPRPAEPARNPFKAENDRTTAVTSSNTSTRPA ARASTSSGEKVVIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRSLLNDDPMFKGVLT RDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRDATGASVWVLSNRRANSEMAGWLEQ HEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMIGQLERIGSMHKR RPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFQAHPM QTGPQGAPAQTASAVSPGNTLTN >gi|283548477|gb|GG730300.1| GENE 253 288286 - 290139 1757 617 aa, chain + ## HITS:1 COG:mutL KEGG:ns NR:ns ## COG: mutL COG0323 # Protein_GI_number: 16131992 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Escherichia coli K12 # 1 617 1 615 615 1021 87.0 0 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIERGGAKLIRIRDNG CGIKKDELALALARHATSKIASLDDLEAIVSLGFRGEALASISSVSRLTLTSRTQEQPEA WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL ARFDVTINLSHNGKVVRQYRAVAADGQKERRLGAICGTSFLEHALAIEWQHGDLTLRGWV ADPNHTTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLSDDDEPAPRHIPENRIAAGR NHFAEPAPAREAAAPRYSAPAGGTGRQAGASWPHAQPGYQKQQGEIYQQLLQTPVLPPKA TVSETPSAPLTGNSQGFGRVLTIVGADCALLECEGHIRLLALPVAERWLRQAQLTPEQGA VCAQPLLIPLRLKVTADEKAALQKGQSQLAELGIEFQLDAQHVTIRAVPLPLRQQNLQIL IPELIGYLAQQSVFEPGNIAQWIARNLISEHSQWSMAQAITLLADVERLCPQLVKAPPGG LLQPVDLHSVMNALKHE >gi|283548477|gb|GG730300.1| GENE 254 290177 - 291082 345 301 aa, chain + ## HITS:1 COG:miaA KEGG:ns NR:ns ## COG: miaA COG0324 # Protein_GI_number: 16131993 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Escherichia coli K12 # 1 300 16 315 316 565 95.0 1e-161 MGPTASGKTALAIELRKVLPVELISVDSALIYKGMDIGTAKPDAEELQAAPHRLLDIRDP SQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPDVRARIEQ QAAERGWDALHRQLQEIDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPY EVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMW SYIEGEISYDEMVYRGVCATRQLAKRQVTWLRGWEGVHWLDSEKPDQARNEVLQVVGAIA N >gi|283548477|gb|GG730300.1| GENE 255 291167 - 291475 315 102 aa, chain + ## HITS:1 COG:STM4361 KEGG:ns NR:ns ## COG: STM4361 COG1923 # Protein_GI_number: 16767607 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Salmonella typhimurium LT2 # 1 102 1 102 102 173 95.0 8e-44 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS TVVPSRPVSHHSNNATGGTGSNYHHGSNAQGSSAQQDSEETE >gi|283548477|gb|GG730300.1| GENE 256 291550 - 292830 714 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 50 398 55 407 425 279 45 2e-73 MFDRYDAGEQAVLVHIYFSQDKDMEDLQEFESLVSSAGVEAMQVITGSRKAPHPKYFVGE GKAIEIAEAVKATGAAVVIFDHALSPAQERNLEQLCQCLVIDRTGLILDIFAQRARTHEG KLQVELAQLRHMATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRILQIQSRLEK VEKQREQGRQSRKKADVPTVSLVGYTNAGKSTLFNQITEARVYAADQLFATLDPTLRRID VADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADFRVQENIEAVDT VLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWVSAQTGIGIPQLFQALTER LSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEDDGSVGLQVRMPIVDWRRLCKQEPA LEDYVV >gi|283548477|gb|GG730300.1| GENE 257 292951 - 294204 1304 417 aa, chain + ## HITS:1 COG:STM4363 KEGG:ns NR:ns ## COG: STM4363 COG0330 # Protein_GI_number: 16767609 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Salmonella typhimurium LT2 # 1 417 1 419 419 644 93.0 0 MAWNQPGNNGQDRDPWGSSKPGGNPEGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKG TGSGGGSSSQGPRPQLGGRVFTIAAAAIVIIWAASGFYTIKEAERGVVTRFGKFSHLVEP GLNWKPTFVDEVIPVNVESVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSA DDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYNMGITLLDVNFQA ARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKTQTILE AQGEVARFAKILPEYKAAPQITRERLYIETMEKVLSHTRKVLVNDKGGNLMVLPLDQMLK GGSAPAAKSDSSSNLLRLPPATTSSTGASNTSSTSQGDIMDQRRANAQRNDYQRQGE >gi|283548477|gb|GG730300.1| GENE 258 294207 - 295211 1404 334 aa, chain + ## HITS:1 COG:STM4364 KEGG:ns NR:ns ## COG: STM4364 COG0330 # Protein_GI_number: 16767610 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 548 96.0 1e-156 MRKSVIAIIIIVLVVLFMSVFVVKEGERGITLRFGKVLRDDDNKPLVYAPGLHFKIPFIE SVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDVSQAEVLLK RKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVATPAADSAIAEAAE RVQAETNGKVPVINPNSMAALGIEVVDVRIKQINLPAEVSEAIYNRMRAEREAVARRHRS QGQEEAEKLRATADYEVTKTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSL RAYEKSFEGNQDVMVMSPDSDFFRYMKTPNTATR >gi|283548477|gb|GG730300.1| GENE 259 295294 - 295491 242 65 aa, chain + ## HITS:1 COG:YPO0377 KEGG:ns NR:ns ## COG: YPO0377 COG3242 # Protein_GI_number: 16120712 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 65 1 65 66 73 81.0 7e-14 MNSTILLALALVLVLEGLGPMLYPGAWKKMISAMAQLPENTLRRFGGGLVVAGVVVYYML RKTIG >gi|283548477|gb|GG730300.1| GENE 260 295594 - 296892 1513 432 aa, chain + ## HITS:1 COG:STM4366 KEGG:ns NR:ns ## COG: STM4366 COG0104 # Protein_GI_number: 16767612 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Salmonella typhimurium LT2 # 1 432 1 432 432 843 96.0 0 MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGI LRENVISIIGNGVVLSPSALMKEMKGLEDRGIPVRERLLLSEACPLILDYHVALDNAREK ARGEKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKATFAEKLKEVMEYHNFQLVNFYKVE AVDYQKVLDDVMAIADILTSMVVDVSDLLDQARKRGDFVMFEGAQGTLLDIDHGTYPYVT SSNTTAGGVATGSGLGPRYVDYVLGIIKAYSTRVGAGPFPTELFDDVGEFLCKQGNEYGA TTGRRRRTGWLDSVAVRRAVQINSLSGFCLTKLDVLDGLKEVKICVAYRMPDGREVTTTP LAADDWKGIEPIYETMPGWSESTFGVKERSGLPQAALNYIKRIEELTGVPIDIISTGPDR TETMILRDPFDA >gi|283548477|gb|GG730300.1| GENE 261 297109 - 297534 231 141 aa, chain + ## HITS:1 COG:ECs5154 KEGG:ns NR:ns ## COG: ECs5154 COG1959 # Protein_GI_number: 15834408 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 271 96.0 3e-73 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG KNGGIRLGKPAKAIGIGDVVRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELD NYTLADLVEENQPLYKLLLVE >gi|283548477|gb|GG730300.1| GENE 262 297573 - 300035 1255 820 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 21 743 4 714 730 488 37 1e-136 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLR AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPQA VEKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKA REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI DFSLISSERAPRNEGKTAREKAKKGDAGKNTGKRRQMGKKVNFEPDSAFRGEKKGRAKPQ ADKKTVEKKGDKKAKKPSAKTLKIAAATKAKRAAKKKVAP >gi|283548477|gb|GG730300.1| GENE 263 300108 - 300839 449 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 3 242 7 246 255 177 39 9e-43 MSEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDE KSEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAG VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVR QRG >gi|283548477|gb|GG730300.1| GENE 264 301059 - 301367 284 102 aa, chain + ## HITS:1 COG:ECs5157 KEGG:ns NR:ns ## COG: ECs5157 COG3789 # Protein_GI_number: 15834411 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 101 33 133 133 145 74.0 1e-35 MDDYGDLQLNVLFTSRQMIIETIICPVNDIQHQDEFNLFLLRHQKLLPLSSVGISRVQLE EYYVAFGALSLNSSLDDVVLEMKTLADNALDLAEITEEYTHE >gi|283548477|gb|GG730300.1| GENE 265 301383 - 302081 756 232 aa, chain + ## HITS:1 COG:yjfJ KEGG:ns NR:ns ## COG: yjfJ COG1842 # Protein_GI_number: 16132004 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Phage shock protein A (IM30), suppresses sigma54-dependent transcription # Organism: Escherichia coli K12 # 1 232 1 232 232 271 91.0 9e-73 MGILKSLFTLGKSVISQAEESIEEAQGVRMLEQHIRDAKGELDKAGKSRVDLLARVKLSN DKLKDLRDRKSTLETRAMEALSKNVDPSLINEVAEEIARLENMIAAEEQVLTNLEASRDG VEKAVNATSQRIAQFEQQLEVVKATEAMQRAQQAVTTSTVGASSSVSTAAESLKRLQTRQ AERQARLDAAAQLEKVADGRDLDEKLAEAGIGATNKSSAQDVLARLQRQQGE >gi|283548477|gb|GG730300.1| GENE 266 302081 - 303148 622 355 aa, chain + ## HITS:1 COG:STM4372 KEGG:ns NR:ns ## COG: STM4372 COG1226 # Protein_GI_number: 16767618 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Salmonella typhimurium LT2 # 1 353 1 353 356 606 83.0 1e-173 MLFTWVIKTCQRHLSRLTWPALLGLFAGQYLFCYLVLRLLGEAVLVGRLSDFIYYCSVVG STLGFGDMSPQTAAGRIFTAIWQIPVSVGLFGALMGKVIGLVQGMLAKGMMGMGDYRHLR NHMLVVGWRGHQTEKMISLLLYDTRRVFERVLLCESDDIQHPLSGNNWVDFIRIRNFNDP QEHARMGLCNCQSAIIFARTDELTFTIALSLVDSIPEQCHVVAYMEDERYAELLEVHCPR IEIVRNLSAEQLSRSIQDPGSSQSVASIMNPMLGDTGFAVPIPEEVVSIRYGDLMCYMKL RHDATVLGISSCKNGRGMELNPVISTEVKGGMWLHLIGNSRILAKEIAWLEIEGK >gi|283548477|gb|GG730300.1| GENE 267 303148 - 303807 576 219 aa, chain + ## HITS:1 COG:no KEGG:STM4373 NR:ns ## KEGG: STM4373 # Name: yjfK # Def: cytoplasmic protein # Organism: S.typhimurium # Pathway: not_defined # 1 219 9 227 227 380 82.0 1e-104 MTSFFQRLFGKAAADAPVRGPLGLHLNAGFTLNTLAFRLLEESLLIELPGEEYTVAAISH IDLGGGSQIFRYYTSGDEFLQINTTGGSDIDDIDDIKFFVYEESYGISQKKHWQSAISPS AIGTPTLNWQEVCWQRFFNDEEPGNIEPVYMLEKVENHQHATWDVHNFTMGYQRQVTDDT WEYLLLNGEESFNEQGEPEWVFSRALGVDIPLTSLDIIG >gi|283548477|gb|GG730300.1| GENE 268 303825 - 304223 360 132 aa, chain + ## HITS:1 COG:STM4374 KEGG:ns NR:ns ## COG: STM4374 COG3766 # Protein_GI_number: 16767620 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 132 1 132 132 211 90.0 2e-55 MHILDSLLAFCAYFFIGAAMVIIFLIIYSKITPHNEWQLIKNNNTAASLAFSGTLLGYVI PLSSAAINAVSIPDYFCWGAIALVIQLIIYGGVRLYMPALSEKIINHNTAAGMFMGTAAL AGGIFNAACMTW >gi|283548477|gb|GG730300.1| GENE 269 304233 - 304874 286 213 aa, chain + ## HITS:1 COG:STM4375 KEGG:ns NR:ns ## COG: STM4375 COG5463 # Protein_GI_number: 16767621 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Salmonella typhimurium LT2 # 1 213 1 212 212 292 75.0 4e-79 MARTRKSGNKNRASGHSAITRIGRPVDPFAKKRSRYSGKYLTLAIMGGAAFFIIKGCADD GNTDNDGDGTFYSTVNECIDDGNSATVCADGWNNAKSEFYADLPKQMSQESCQTQFGDCY LDSTDQSWVPVFTGFLLSRIIRKDRDEQYVYSSGGSSYASRPVWRTPSGDYSWRSGSGKS DTATSHSYTTKKVSTVSRGGYGRSSSARGHWGG >gi|283548477|gb|GG730300.1| GENE 270 304877 - 306043 1083 388 aa, chain + ## HITS:1 COG:yjfC KEGG:ns NR:ns ## COG: yjfC COG0754 # Protein_GI_number: 16132008 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli K12 # 1 388 1 387 387 734 89.0 0 MLRHDVPVRPDLDRIAYDHGFDFHIIDDEIYWDESRAYRFTLRQVEEQIEKPTAELHQMC LDVVERAVKDEQIMQQLAIPPLYWDVIAESWRDRDPSLYGRMDFVWCGNNAPVKLLEYNA DTPTSLYESAYFQWLWLEDARRSGAIPRDADQYNAIQERLISRFAELYSPEPFYFCCCED TDEDRSTVLYLQDCAQQAGQESRFIYVEELGLGVGGVLTDLDDNVIRRAFKLYPLEWMMR DENGPLLRHRREQWVEPLWKSVLSNKGLMPLLWRFFPNHPNLLPAWFDGETPQIAAGESY VRKPIFSREGGNVTIFNGQQQVVEHAEGDYAEEPMIYQAFQPLPHFGDSYTLIGSWIVDD EACGMGIREDNTLITKDTSRFIPHYIAG >gi|283548477|gb|GG730300.1| GENE 271 306128 - 307750 1363 540 aa, chain + ## HITS:1 COG:aidB KEGG:ns NR:ns ## COG: aidB COG1960 # Protein_GI_number: 16132009 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Escherichia coli K12 # 1 539 6 544 546 1004 89.0 0 MHWQTHTVFNQPVPLNNSNLYLSDGALCEAVIREGAGWDSDLLASIGQQLGTAESLELGR LANAFPPELLRYDAQGQRLDDARFHPAWHLLMQGLCANRVHNLAWEDDARQGTFVARAAR FMLHAQVEAGTLCPVTMTFAATPLLFQMLPAPFHDWLTPLLSDRYDSHLLPGGQKRGLLI GMGMTEKQGGSDVLSNTTQAERLADGSYRLVGHKWFFSVPQSDAHLVLAQAKGGLSCFFV PRFLPDGGRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGEEGEGIRHILKMGGMTRF DCALGSHGMMRRAFSVAIYHAHQRQVFGKPLIEQPMMRQVLSRMALQLEGQTALLFRLAR AWDRRENAKEALWARLFTPAAKFSICKSGMPFVAEAMEVLGGIGYCEESELPRLYREMPV NSIWEGSGNIMCLDVLRVLTKQPGIYDMLSEAFAEVKGQDRHYDRLVRQLQQHLRKPSEE LGREITQQLFLLGCGAQMLRYASPPVAQAWCQMMLDTRGGRRISEQVQNDLLLRATGGLR >gi|283548477|gb|GG730300.1| GENE 272 307835 - 308122 305 95 aa, chain - ## HITS:1 COG:no KEGG:ROD_32421 NR:ns ## KEGG: ROD_32421 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 95 1 95 95 160 87.0 1e-38 MELTMKQSLALSSLLLSTGLVGTTAQPAEFASADCVTGLNEIGLISVSNIAGNPQDVERV VALKADEQGASWYRIIQMYEDQQPDNWRVQAILYA >gi|283548477|gb|GG730300.1| GENE 273 308258 - 308560 253 100 aa, chain - ## HITS:1 COG:no KEGG:APECO1_2203 NR:ns ## KEGG: APECO1_2203 # Name: not_defined # Def: putative biofilm stress and motility protein A # Organism: E.coli_APEC # Pathway: not_defined # 3 100 45 142 142 173 89.0 2e-42 MRRFASLLLVLFLSACSVLQGTPQPAPPVADHPQEIRRDQSNGLQRIGTVSALVRGSPDD ALAEIRAKAVAAKADYYVVLLVDETIVTGQWYSQAILYRK >gi|283548477|gb|GG730300.1| GENE 274 308769 - 309518 492 249 aa, chain + ## HITS:1 COG:STM4380 KEGG:ns NR:ns ## COG: STM4380 COG1073 # Protein_GI_number: 16767626 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 407 81.0 1e-114 MIEIETRQLAGISVLHAVPVGKRECPLPCIIFYHGFTSSSLVYSYFAVALAQAGFRVVMP DAPDHGARFSGDTQGRMYRFWPILQQNMQEFTTLRAALAAENWLSDERLAVGGASMGGMT ALGIMARHPEVKCVASLMGSGYFTRLAHTLFPPLLVQTPEQQAQFDAIIAPLAAWDVTHQ LPRLADRPLLLWHGQDDDVVPAVETFRLQQVLIQAGLDNNLTCLWEAGVRHRITPEALAA TVTFFRQHL >gi|283548477|gb|GG730300.1| GENE 275 309515 - 310270 873 251 aa, chain - ## HITS:1 COG:ECs5167 KEGG:ns NR:ns ## COG: ECs5167 COG1349 # Protein_GI_number: 15834421 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 251 1 251 251 469 96.0 1e-132 MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAIT QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNAGESVVINCGSTAFLLGREMCGKPVQII TNYLPLANYLIDQEHESVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTADGL YKTDMLTAMAEQKMLNVVGKLVVLVDSSKVGERAGMLFSRADQIDMLITGKNADPEILQQ LEAQGVSIMRV >gi|283548477|gb|GG730300.1| GENE 276 310377 - 311441 1105 354 aa, chain - ## HITS:1 COG:STM4382 KEGG:ns NR:ns ## COG: STM4382 COG2220 # Protein_GI_number: 16767628 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Salmonella typhimurium LT2 # 1 354 1 354 354 744 98.0 0 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCV DFWCGTGKQSHGNPLMKTGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHN DHIDVNVAAAVMQNCADDVPFIGPQTCVDLWVGWGVPKERCIVVKPGDVVKVKDIEIHAL DAFDRTALITLPADQKAAGVLPDGMDARAVNYLFKTPGGTLYHSGDSHYSNYYAKHGNEH QIDVALGSYGENPRGITDKMTSSDMLRMAEALNTKVVIPFHHDIWSNFQADPQEIRVLWE MKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDDCFTIEPDLPFKSFL >gi|283548477|gb|GG730300.1| GENE 277 311808 - 313205 1576 465 aa, chain + ## HITS:1 COG:STM4383 KEGG:ns NR:ns ## COG: STM4383 COG3037 # Protein_GI_number: 16767629 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 465 12 476 476 796 96.0 0 MEILYNIFTVFFNQVMTNAPLLLGIVTCLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSG ILTSTFKPVVAKMSEVYGINGAISDTYASMMATIERMGDAYSWVGYAVLLALALNICYVL LRRITGIRTIMLTGHIMFQQAGLIAVSLYIFGYPMWTTIICTAVLVSLYWGITSNMMYKP TQEVTDGCGFSIGHQQQFASWIAYKVAPYLGKKEESVEDLKLPGWLNIFHDNIVSTAIVM TIFFGAILLSFGIDVVQAMAGKTHWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNG ISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGTIGQLIAVGILVGCGSSILIIPGFIPM FFSNATIGVFANHFGGWRAALKICLVMGMVEIFGCVWAVKLTGMSAWMGMADWSILAPPM MQGFASIGIAFMAVIILIALAYMFFAGRTLRAEEDAEKQLAEHSA >gi|283548477|gb|GG730300.1| GENE 278 313221 - 313526 395 101 aa, chain + ## HITS:1 COG:ECs5170 KEGG:ns NR:ns ## COG: ECs5170 COG3414 # Protein_GI_number: 15834424 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, galactitol-specific IIB component # Organism: Escherichia coli O157:H7 # 1 101 1 101 101 192 97.0 2e-49 MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEYKSELNGADIIIASTHI AGEITVSGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK >gi|283548477|gb|GG730300.1| GENE 279 313538 - 314005 733 155 aa, chain + ## HITS:1 COG:STM4385 KEGG:ns NR:ns ## COG: STM4385 COG1762 # Protein_GI_number: 16767631 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Salmonella typhimurium LT2 # 1 154 1 154 154 279 92.0 1e-75 MKLRDSLADNNSILLQAEASTWQEAVKLGVDLLVKADVVEPRYYQAILDGVEQFGPYFVI APGLAMPHGRPEEGVKKTGFALVTLKTPLVFNHEDNDPVDILITMAAVDANTHQEVGIMQ IVNLFDDEANFDRLRACRTAQEVLDLIDNATAAAV >gi|283548477|gb|GG730300.1| GENE 280 314018 - 314668 801 216 aa, chain + ## HITS:1 COG:sgaH KEGG:ns NR:ns ## COG: sgaH COG0269 # Protein_GI_number: 16132018 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Escherichia coli K12 # 1 216 1 216 216 407 95.0 1e-114 MSLPMLQVALDNQSMSSAYETTRLIAEEVDIIEVGTILCVAEGVRAVRDLKALYPHKIVL ADAKIADAGKILSRMCFEANADWVTVICCADINTTKGALEVAKEFNGDVQIELTGYWTWE QAQEWRDAGIGQVVYHRSRDAQAAGVAWGEADISAIKRLSDMGFKVTVTGGLALEDLPLF QGIPIHVFIAGRSIRDAASPVEAARQFKRSIAQLWG >gi|283548477|gb|GG730300.1| GENE 281 314678 - 315532 891 284 aa, chain + ## HITS:1 COG:STM4387 KEGG:ns NR:ns ## COG: STM4387 COG3623 # Protein_GI_number: 16767633 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Salmonella typhimurium LT2 # 1 283 1 283 284 551 93.0 1e-157 MLSKQVPLGIYEKALPGGECWLERLRLAKELGFDFVEMSVDETDARLARLDWSREQRLAL VAAIAETGVRVPSMCLSAHRRFPLGSEDDAVRDRGLAIMRKAIQFAQDIGIRVIQLAGYD VYYQQANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWF QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFATLK QSGYCGPYLIEMWSETTDDPAREVAKARDWVKARMASAGLVEAV >gi|283548477|gb|GG730300.1| GENE 282 315532 - 316218 846 228 aa, chain + ## HITS:1 COG:ECs5174 KEGG:ns NR:ns ## COG: ECs5174 COG0235 # Protein_GI_number: 15834428 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli O157:H7 # 1 228 1 228 228 432 90.0 1e-121 MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSGVDYQTMQVDDMVVVDL DGNVVEGRYRPSSDTATHLALYRRYLSLGGVVHTHSTHATAWAQAGLAIPALGTTHADYF FGDIPCTRALTEAEVQDEYELNTGKVIIETLGNVEPLHTPGVVVYQHGPFAWGKDAHDAV HNAVVMEEVAKMAWIARGINPALSHIDSYLMNKHFMRKHGPNAYYGQK >gi|283548477|gb|GG730300.1| GENE 283 316466 - 316741 162 91 aa, chain - ## HITS:1 COG:no KEGG:ECO111_5015 NR:ns ## KEGG: ECO111_5015 # Name: yjfY # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 15 91 15 91 91 122 89.0 4e-27 MRARVLTLLAVLLLSANATAAIKIDGHQARNMDDVQSLGVIYINHNFATESEAIQALNEE TDAQGATRYHVILTREPGSNGNMHASADIYR >gi|283548477|gb|GG730300.1| GENE 284 317040 - 317804 832 254 aa, chain + ## HITS:1 COG:YPO2753 KEGG:ns NR:ns ## COG: YPO2753 COG0730 # Protein_GI_number: 16122957 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Yersinia pestis # 13 252 13 252 268 232 50.0 5e-61 MDTSFMDFSYFVIMFMVALVAGFINVVSGGGGFLSIGALLISGLPPANALATNKIQALGS SLTSGIYFLRRGHINVQEHKYVFLSAFIGSALGTTLIQFIEPQVLKKLLPVLIIAVAIYF ISAPNLSEPKRKQQISLFLFSLICGGCIGFYDGFLGAGAGSFYTLCYILLWGYSIDKAQI HSNFINLASNIASILFFIFGGKMIWSLGLVMFAGQSLGARLGATVVLTRGKKVIRPMIVI VSICISVKMLLDMY >gi|283548477|gb|GG730300.1| GENE 285 317964 - 318359 671 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157147829|ref|YP_001455147.1| 30S ribosomal protein S6 [Citrobacter koseri ATCC BAA-895] # 1 131 1 131 131 263 98 2e-68 MRHYEIVFMVHPDQSEQVPGMIERYTGAITAAEGTIHRLEDWGRRQLAYPINKLHKAHYV LLNVEAPQEVIDELETNFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANET ADDADAGDSEE >gi|283548477|gb|GG730300.1| GENE 286 318366 - 318680 91 104 aa, chain + ## HITS:1 COG:STM4392 KEGG:ns NR:ns ## COG: STM4392 COG2965 # Protein_GI_number: 16767638 # Func_class: L Replication, recombination and repair # Function: Primosomal replication protein N # Organism: Salmonella typhimurium LT2 # 1 104 1 104 104 198 98.0 2e-51 MTNRLALSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQ AITHSITVGSAVTVQGFISCHKAKNGLSKMVLHAEQIELIDSGD >gi|283548477|gb|GG730300.1| GENE 287 318685 - 318912 385 75 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15834432|ref|NP_313205.1| 30S ribosomal protein S18 [Escherichia coli O157:H7 str. Sakai] # 1 75 1 75 75 152 100 2e-35 MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIK RARYLSLLPYTDRHQ >gi|283548477|gb|GG730300.1| GENE 288 318954 - 319403 721 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227331258|ref|ZP_03834914.1| hypothetical protein CIT292_00613 [Citrobacter youngae ATCC 29220] # 1 149 1 149 149 282 100 3e-74 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVEFFEARRAELEAKLAD VLSAAEARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG VLRTTGEHEVSFQVHSEVFAKLTVNVVAE >gi|283548477|gb|GG730300.1| GENE 289 319545 - 320468 1091 307 aa, chain + ## HITS:1 COG:STM4395 KEGG:ns NR:ns ## COG: STM4395 COG0697 # Protein_GI_number: 16767641 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 9 307 10 308 308 474 88.0 1e-133 MEPTHQPLFARKNVVYLSAAFCCLLWGSAYPAIKSGYEIFQIATDDIPSKIVFAGYRFLF AGLLLLLLAVAQRKPIGRLSPRQFGQLTLLGLTQTSLQYIFFYIGLAFTTGVKGSIMNAT GTFFSVLLAHFIYQNDKLSYNKALGCILGFLGVMVVNFNSGLDFSFSLLGDGSVVMAAFI LSAATLYGKRISQTVDPTVMTGYQLGMGGLVLVIGGYAFGGTLTVHGASSVAILGYLTLL SSVAFALWSILLKHNRVGMIAPFNFLIPVSGAVLSAIFLGENILEWKYAVALVLVCSGIW WVNKVKR >gi|283548477|gb|GG730300.1| GENE 290 320521 - 321171 575 216 aa, chain - ## HITS:1 COG:ytfB KEGG:ns NR:ns ## COG: ytfB COG3061 # Protein_GI_number: 16132028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell envelope opacity-associated protein A # Organism: Escherichia coli K12 # 1 216 13 224 224 302 81.0 3e-82 MPGRFELKPTLAKIWHAPDNFRIMDPLPPMHRRGIIIAAIVLVIGFLLPSSDTSDAPVVT RTAQLDLQSQSQPPTEAQLQAQLVPPQNDPGQVAPVAPEPIQEGEPDAQPQAQQSQPQSQ PFQQDSGIEQQWRSYRVDSGKTLAQVFRDHNLPPTDVYAMAQVEGAGKPLSNLKDGQMIQ IRQNANGVVTGLTIDTGNGQQVLFTRQPNGSFIRAR >gi|283548477|gb|GG730300.1| GENE 291 321391 - 322011 852 206 aa, chain + ## HITS:1 COG:ECs5185 KEGG:ns NR:ns ## COG: ECs5185 COG0545 # Protein_GI_number: 15834439 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1 206 54 259 259 382 95.0 1e-106 MATPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIADALEGKHPAVPVDVVHR ALREIHERADAVRRERFQAMAADGVKYLEENREKEGVNSTESGLQFRVLTQGEGAIPART DRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQELA YGERGAGASIPPFSTLVFDVELLEIV >gi|283548477|gb|GG730300.1| GENE 292 322320 - 323729 1866 469 aa, chain + ## HITS:1 COG:ECs5186 KEGG:ns NR:ns ## COG: ECs5186 COG1113 # Protein_GI_number: 15834440 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli O157:H7 # 1 469 1 469 470 812 95.0 0 MVDQVKVEAVEEASSEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVY MIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVV AITAYAQFWFPELSDWVASLAVIVLLLSLNLATVKMFGEMEFWFAMIKIVAIIGLIVVGL VMVLTHFQSPTGVQASFTHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKD PEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPSKSPFVELFVLVGLPAAASLIN FVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVV MLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCW VCMAFFVFVLVLLTLEEDTRQALIVTPLWFIALGLGWLFIGKKRMAGMR >gi|283548477|gb|GG730300.1| GENE 293 323817 - 324479 897 220 aa, chain - ## HITS:1 COG:STM4399 KEGG:ns NR:ns ## COG: STM4399 COG2846 # Protein_GI_number: 16767645 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Regulator of cell morphogenesis and NO signaling # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 398 90.0 1e-111 MSYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDLDAIEAQLAQLAE QPLEKDWRSVALAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPNVPRGLAKNLT MLHEELSSHMMKEEQILFPMIKQGMGRQAMGPISVMESEHDDAGELVEVIKHITHNVTPP PEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGE >gi|283548477|gb|GG730300.1| GENE 294 324724 - 326295 1706 523 aa, chain + ## HITS:1 COG:ECs5315 KEGG:ns NR:ns ## COG: ECs5315 COG0840 # Protein_GI_number: 15834569 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 # 1 517 1 517 554 459 58.0 1e-129 MFKRIKVITLLITVLLALGAMQLISAGVFIGALNNDKQNFNVSQLSSQNVAEFTDAWISL NQARVTLNRGMLRLQGTMASEINGGQLKELVNTANRLLAESKEHYDKYYALPETPGLDEH LADRLEEQYGIYSATLAKMNALLAEGKLEEMFRQNAEQKQTAMQDVYRQWRSAQTALATA GVQDNESDYQKIIWLLSAVMAIVVAIIIASWLAMQRVLLKPLHDVMGHIRHIAAGDLTHS INADGSNEMALLARNVRDMQQALANTVSVVRDGADTIYTGAGEIAAGSNDLSSRTEQQAA SLEETAASMEQLTATVKQNADNARQATSLAKNASQTAQKGGKVVDGVVRTMDEIAASSSK IAQITTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKAL IDDSGNRVNAGTALVHEAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEM DRVTQQNASLVEESAAAAAALEEQAARLNQTVAVFNVSRRMAA >gi|283548477|gb|GG730300.1| GENE 295 326333 - 327301 1061 322 aa, chain - ## HITS:1 COG:ECs5188 KEGG:ns NR:ns ## COG: ECs5188 COG0697 # Protein_GI_number: 15834442 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 319 4 322 324 486 86.0 1e-137 MISGVLYALLAGLMWGLIFVGPLIVPEYPAVLQSMGRYLALGLIALPIAWLGRARLRQLS RQDWVTALALTMMGNLIYYVCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKL SWWRLSPALVLIGIGLLCVNISELNQGLPDFSGWRYGSGIALALISVVCWAWYALRNARW LRENPDKHPMMWATAQALVTLPVSLLGYIAACLWLNGQTPDFALPFGPRPGVFIGLMIAI AVLCSWVGALCWNVASQKLPTVILGPLIVFETLAGLLYTFILRQGVPPLLTLSGITLLVI GVVIAVRSKPQKPAVVPVSGDA >gi|283548477|gb|GG730300.1| GENE 296 327378 - 328202 781 274 aa, chain - ## HITS:1 COG:mll5158 KEGG:ns NR:ns ## COG: mll5158 COG2207 # Protein_GI_number: 13474301 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Mesorhizobium loti # 25 271 33 282 290 137 34.0 2e-32 MQGVPEQFIDEKDSARFRHLAQVPGVELYHAHISRYAFEPHTHEAFGIGAIEAGAERFRY RGTQYVAPAHSVVTMNPDELHTGEAETADGWRYRMIYLEPDLLEQVTGIRHWWFHDVTRH DPLRSRQICSLIHGLWNTEDPLAQKGLLLDLIDTFQPLARHAPISAEGTHRFERVREYLH DNYMHPVTLDELARVASLSPWHFQRQFKSHFHVTPHQMLMAIRLWRAKGFLTHGMPAADV AAATGLTDQSHLTRAFTHRYGITPVRYQKQVYSR >gi|283548477|gb|GG730300.1| GENE 297 328284 - 329132 1198 282 aa, chain - ## HITS:1 COG:ECs5190 KEGG:ns NR:ns ## COG: ECs5190 COG0702 # Protein_GI_number: 15834443 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 281 1 281 286 400 85.0 1e-111 MIAITGATGQLGQHVIETLLKTVPASQIVAIVRNPAKATALSQQGITVRQADYTDEAAFT TALQGIDKLLLISSSEVGQRAPQHRNVINAAKAAHVKFIAYTSLLHADSSPLGLADEHVA TEKMLAESGIAYALLRNGWYTENYLASAPAALEHGVFIGAAGEGKIASATRADYAAAAAR VISEEGHAGKIYELAGDAGWTLSQLAAELAKQSGKKVVYQNLSEADFAAALKGFGLPAGL ADMLADSDTGASKGGLFDDSHTLSKLLGRPTTSLADSVKGLI >gi|283548477|gb|GG730300.1| GENE 298 329223 - 329597 405 124 aa, chain + ## HITS:1 COG:STM4402 KEGG:ns NR:ns ## COG: STM4402 COG1733 # Protein_GI_number: 16767648 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 121 1 121 128 225 95.0 2e-59 MTASTLSQQLRDGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRKMGGVSE KMLAQSLQALEQDGFINRVSYPVVPPHVEYSLTPLGEQVSDKVAALADWIELNLAQVLAQ RIPA >gi|283548477|gb|GG730300.1| GENE 299 329671 - 331614 2387 647 aa, chain - ## HITS:1 COG:STM4403 KEGG:ns NR:ns ## COG: STM4403 COG0737 # Protein_GI_number: 16767649 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Salmonella typhimurium LT2 # 1 647 1 647 647 1213 93.0 0 MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKDTPTEKFGLVRTASLIN AARGEVKNSVLVDNGDLIQGSPLGDYMAAKGLKAGETHPVYKALNTLDYAVGNLGNHEFN YGLEYLHNALAGAKFPYVNANIIDVKTQKPMFTPYLIKDTEVIDHEGNKQTLKIGYIGFV PPQIMTWDKANLSGKVTVNDITETARKYVPEMRAKGADVVVVVAHSGLSADPYQSMAENS VYYLSEVPGVDAIMFGHAHAVFPGKDFANIKGADIAKGTLNGIPAVMPGMWGDHLGVVDL VLNNDSGKWQVTQTKAEARPIYDAAAKKSLAGEDKKIVEILKADHDATREFVSKPIGKSA DNMYSYLALVQDDPTVQVVNNAQKAYVEHFIQGDPDLAKLPVLSAAAPFKVGGRKNDPAS FVEVEKGQLTFRNAADLYLYPNTLVVVKASGKEVKEWLECSAGQFNQIDIHSSKPQSLIN WDGFRTYNFDVIDGVNYQIDVSQPARYDGECKTINPQAERIKNLTFNGKPVDPNATFLVA TNNYRAYGGKFAGTGDSHIAFASPDENRSVLASWISAQTKSTGEIHPAADNNWRLAPIHS ETKQDIRFETSPSEKAAAFIKEKGQYPLKKVATDDIGFAIYQLDLSK >gi|283548477|gb|GG730300.1| GENE 300 331803 - 332543 879 246 aa, chain + ## HITS:1 COG:STM4404 KEGG:ns NR:ns ## COG: STM4404 COG1218 # Protein_GI_number: 16767650 # Func_class: P Inorganic ion transport and metabolism # Function: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase # Organism: Salmonella typhimurium LT2 # 1 246 1 246 246 442 91.0 1e-124 MLEHVCQLARNAGDAIMQVYDGIKPMEIASKQDDSPVTAADIAAHTVILEGLQALTPDIP VLSEEAPPGWDVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIEKGKPILGVVYAPVM KVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHADNELKEYLQQLGEHQTTSIGS SLKFCLVAEGHAQLYPRFGPTNVWDTAAGHAVAAAAGAHVHDWQGKTLDYTPRESFLNPG FRVSIY >gi|283548477|gb|GG730300.1| GENE 301 332591 - 333460 161 289 aa, chain - ## HITS:1 COG:MA0573 KEGG:ns NR:ns ## COG: MA0573 COG0535 # Protein_GI_number: 20089462 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Methanosarcina acetivorans str.C2A # 4 287 58 347 349 103 27.0 4e-22 MPFLLTLTGGEPFAHPEFIKLLHFLHEHPQRPNIAILTNGTLLTETRLKLIAPIRLAFIQ LSVDGDSIIHDEIRGPGNFSRVLEATKRLKAEGRRVLWSFTAHKKNINSFATVANLARRY AVDRLWFDRLIPCRENIPDILDQAETQDFFQSAAQIKKKLERPNFIHRLLKPQGKTEISM LRALQFQHHGSAPYRCQAGAGLITIMPNADVYPCRRLPVAVGNMLQTPLTEIYQNAPLFR QLREFTWPAACGKCLFKTQCRGGLRCLAWAVNHDAFTADPGCQYATGPD >gi|283548477|gb|GG730300.1| GENE 302 333650 - 334546 269 298 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834837|ref|ZP_06354578.1| ## NR: gi|283834837|ref|ZP_06354578.1| keratin-associated protein 17-1 [Citrobacter youngae ATCC 29220] keratin-associated protein 17-1 [Citrobacter youngae ATCC 29220] # 1 262 1 262 298 530 100.0 1e-149 MAWGLVDNPIISLSGGHFLLFYYTIIITSRYLLILYKKKLHKRQSESLNVNEDPFFIAWL KDPTMGITNMVMGPLLDEGYITNKNNQYYQISKKKKANTTLYERLILDYFRKPNTVSGIS KIFTNKYEEHQKKAERMYLIYNDADKRKIVKQHRRCLLSIMALGLYKLIIAINTGHTNIA YLTLTIFVVVPVVFASRINMNAVTLTPCGQKYIRLYHDTLLNVTNKNLQQAWLSKVLTGG AAVAGLYATQAAASDYGNNSFHDSSDSSGSSCGGSSCGGSSCSGSSCGGSGCGGCGGD >gi|283548477|gb|GG730300.1| GENE 303 334664 - 335221 759 185 aa, chain - ## HITS:1 COG:ECs5194 KEGG:ns NR:ns ## COG: ECs5194 COG3054 # Protein_GI_number: 15834448 # Func_class: R General function prediction only # Function: Predicted transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 183 1 183 184 320 86.0 1e-87 MTLQKLLALSCLLLPMIASAHKFETNQRVPPVGIADRGELILDNDKFSYKSWNSAQLPGK VRIVQHIAGRTSAKEKNANLIEAIKAAKLPHDKYQTTTIVNTDDAIPGSGMFVRSSLESN KKLYPWSQFIVDSNGIARKAWQLDEESSAIAVLDKDGRVQWAKDGALTQEEVQQVIALLH KLLAQ >gi|283548477|gb|GG730300.1| GENE 304 335549 - 335755 289 68 aa, chain + ## HITS:1 COG:no KEGG:Z5828 NR:ns ## KEGG: Z5828 # Name: ytfK # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 1 68 14 81 81 117 97.0 1e-25 MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHFSVMSEVNRQV LRLQTEMA >gi|283548477|gb|GG730300.1| GENE 305 335824 - 337164 1547 446 aa, chain - ## HITS:1 COG:STM4407 KEGG:ns NR:ns ## COG: STM4407 COG1253 # Protein_GI_number: 16767653 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Salmonella typhimurium LT2 # 1 445 1 447 447 822 93.0 0 MLNSILVILCLIAVSAFFSISEISLAASRKIKLKLLADEGNVNAQRVLKMQENPGMFFTV VQIGLNAVAILGGIVGDAAFSPAFYSLFSKYFAPELSEQLSFILSFSLVTGLFILFADLT PKRIGMIAPEAVALRIINPMRFCLLVFRPLVWFFNGLANNIFRLFKIPMVRKDDITSDDI YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTSRENIIWFDLHEDEQSLKNKVAE HPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSMALNSGVQIRNTLIVPDTLTLSEALE SFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLVDGGTP IDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKYSGYKFEVVDIDNYKIDQL LVTRLDSKPTVLVPKLPDAKEEAKAS >gi|283548477|gb|GG730300.1| GENE 306 337316 - 337954 531 212 aa, chain - ## HITS:1 COG:msrA KEGG:ns NR:ns ## COG: msrA COG0225 # Protein_GI_number: 16132041 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Escherichia coli K12 # 1 212 1 212 212 370 91.0 1e-103 MSLFDRKHLVTQADALPGRNTPMPVATLHAVNQHSMTNVPDGMEIALFAMGCFWGVERLF WSLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRVVYDPHVISYEQLLQVFWENHD PAQGMRQGNDQGTQYRSAIYPLTPEQTAAAQASLERFQAAMTAAGDERTITTEISTATPF YYAEDDHQQYLHKNPYGYCGIGGIGVCLPPQG >gi|283548477|gb|GG730300.1| GENE 307 338167 - 339900 1945 577 aa, chain + ## HITS:1 COG:STM4409 KEGG:ns NR:ns ## COG: STM4409 COG0729 # Protein_GI_number: 16767655 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 577 1 577 577 1092 92.0 0 MPHIRQLCWVGLLCLSGSAAAANVRLQVEGLSGPLEKNVRAQLSTIQSDEVTPDRRFRAR VDDAIREGLKALGYFEPTIDFELRPPPAKGRQVLIAKVTPGEPVLIGGTDVILRGGARTD KDYLELLKTRPAIGTVLNQGDYDNFKKSLTSVALRKGYFDSEFNKSQLGIALERRQAFWD IDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGEEYESKDLGELNRRLSATGWFNSVV VAPEFDKARKTKVLPLKGVVSPRTENTIETGVGYSTDVGPRLKTSWKKPWMNSYGHSLTT SASISAPEQVLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTEQDSTTLAVSRYWDLSSG WQRAINLRWSLDHFTQGNVTNTTMLLYPGVMISRTRSRGGLMPVWGDSQRYSIDYSNTAW GSDVDFSVFQAQNVWIRTLYDRHRFVMRGNLGWIETGDFDKVPPDLRFFAGGDRSIRGYK YKSISPEGSDGKLTGASKLATGSLEYQYNVTGKWWGAMFVDSGEAVSDIRKSDFKTGAGV GVRWQSPVGPIKLDFAVPVGDKDEHGLQFYIGLGPEL >gi|283548477|gb|GG730300.1| GENE 308 339897 - 343673 4393 1258 aa, chain + ## HITS:1 COG:STM4410 KEGG:ns NR:ns ## COG: STM4410 COG2911 # Protein_GI_number: 16767656 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 1258 1 1259 1259 2219 89.0 0 MSLWKKISLGVLVFILLLLGTVAFLVGTTSGLHLIFKAANRWVPGLEIGQVTGGWRDLSL KNIRYDQPGVAVNAGEVHLAVGLDCLWDSSLCVNDLSLKNINVAIDSKKMPPSAPVEEED SGPLNLSTPYPITLSRVALNNINIKIDDTTVSLLDFTSGLNWQEKTLTLKPTSLQGLLIA LPKVADVAQEEVVEPKIQNPQPDEKPLGETLKDLFSKPVLPEMTDVHLPLNLNIEEFRGE QLRVTGDTDLTVHNMLLKVSSIDGNMKLDALDIDSNQGTVNASGTAQLTDAWPVDITLNS TLNIDPLKGEKVKLKVGGALREQLEVGVNLSGPVDMDLRAQTRLAEAGLPLNLEVASKQV YWPFTGDKQFQADDIKLKLTGKMTDYTLSMRTAVKGQDIPPATITLDAKGNEQQINLDKL SIAALEGKTELKALVDWQQAISWRGELTLDGINTAKAIPDWPSKLNGLVKTRGSLYGGSW QMEVPELKLTGNVKQNKVNVNGSLKGNSYLQWTIPGLHLELGRNSADVKGELGVKDLNLD ATIDAPSLDNALPGLGGTAKGLVKVRGTVEAPQLLADITARGLRWQELSIAQVRVEGDVK SAEQIAGNLNVRVERIVQPDVNIGLVTLNAKGSEKQHELQLRIQGEPVSGQLDLAGSFDR KEQRWKGALSNTRFQTPVGPWSLNRAIALDYRNQEQKISIGPHCWNNPNAELCVPQTIDA GAEGRAVVNLNRFDLAMLKPFMPDTTQASGVFTGKADVSWDTTKEGLPQGQVTLSGRNVK VTQSVNDAPLPVAFETLNLSADLHNNRAELGWLIRLTNNGQFDGKVQITDPQGRRNLGGN VNIRNFNLAMVNPIFSRGEKAAGMLNANLRLGGDVQSPQLLGQLQLSGLDVDGNFMPFDM QPSQLAVNFTGTRSTLAGVVRTQQGQINLSGDADWSQIENWRARIAAKGSRVRITVPPMV RLDVSPDVEFEATPNLFTLNGNVDVPWARIVVHDLPESAVGVSSDMVMLNNDLQPEKPQT AGIPINSNLNIHVGNNVRIDAFGLKARLTGDLKVAQDKQGLGLNGQINIPDGRFHAYGQD LIVRKGELLFSGPPDQPLLNIEAIRNPDATEDDVIAGVRVTGSADEPKAEIFSDPAMSQQ MALSYLLRGQGLDSEQSDSAAMTSMLIGLGVAQSGQVVGKIGETFGVSNLALDTQGVGDS SQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF >gi|283548477|gb|GG730300.1| GENE 309 343676 - 344020 306 114 aa, chain + ## HITS:1 COG:ECs5200 KEGG:ns NR:ns ## COG: ECs5200 COG2105 # Protein_GI_number: 15834454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 113 1 113 113 213 94.0 8e-56 MRIFVYGSLRTKQGNSHWMTNALLLGNFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRIDN ATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLTLIESGNWLDRDQY >gi|283548477|gb|GG730300.1| GENE 310 344278 - 345405 336 375 aa, chain + ## HITS:1 COG:yhhZ_1 KEGG:ns NR:ns ## COG: yhhZ_1 COG3157 # Protein_GI_number: 16131314 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli K12 # 1 167 1 167 170 223 61.0 7e-58 MSNIVYLKLISEQQGDISDGCGTTDSVGNRWQQNHVNEIFVFSLLAGVTSTGKGANLQHL TFNKQIDKSSPLLVNAINNNERLFLEFWFYRINRYGQWEKYYYIQLRGASISSIQMRVIK DEIDTETISVDYDYILSKHLISNTEFSYLALPAEYNKLFVPAPKPQTQTLNSAGVGRLLA AGGIYNGNIKGFRDTAEKLGGDAVKGYDQIMNEQTRGLLIAGASIAAGVGVGRLSALSEL GEISKYSKIPSLESPYLKGFTSEAGALLNAKHAVIDPKKIVSYALNPEHPVGGNKARVFE SALGFNPSNAGVLVSRVQQGIMTNPAELGLYDSFGQRMSVDIPILGVNGDTAIVRTGWMY ETDSLVPRMTTIYVK >gi|283548477|gb|GG730300.1| GENE 311 345417 - 345620 104 67 aa, chain + ## HITS:1 COG:no KEGG:CKO_03605 NR:ns ## KEGG: CKO_03605 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 62 2 63 67 105 88.0 8e-22 MILSPLDVVFLNVDLPGFGLTKGQIGAVIDVYHSPSLAYEIEFCDEEGKTIASLALLPEQ LTTGGAG >gi|283548477|gb|GG730300.1| GENE 312 345694 - 346221 747 175 aa, chain - ## HITS:1 COG:STM4414 KEGG:ns NR:ns ## COG: STM4414 COG0221 # Protein_GI_number: 16767660 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Salmonella typhimurium LT2 # 1 175 1 175 176 335 96.0 2e-92 MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEVDKESGALFVDRFMSTAMFYPCNYGYIN HTLSLDGDPVDVLVPTPYPLEPGSVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDH IKDVTDLPELLKAQITHFFEHYKDLEAGKWVKVDGWDNAEAAKAEIVASFERAKK >gi|283548477|gb|GG730300.1| GENE 313 346531 - 347487 1118 318 aa, chain + ## HITS:1 COG:ytfQ KEGG:ns NR:ns ## COG: ytfQ COG1879 # Protein_GI_number: 16132049 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli K12 # 1 318 1 318 318 560 96.0 1e-159 MWKRLLLVTAVSAAMSSMAMAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD GQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDADIPVFLLDRSIDVKDKS LYMTTVTADNVLEGKLIGDWLIKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIANAPN IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMAIGAIQAIKEAGLKPGK DILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPAFDALEKFKKDGTMPEKLTITKSIL YLPDTAKEELEKKKNMGY >gi|283548477|gb|GG730300.1| GENE 314 347609 - 349111 174 500 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 281 489 33 230 312 71 25 7e-11 MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYH ADRGTIWLEGQPVSPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPRRFGLLQRK QMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQE VEMLFGLMQHLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETHELPQIELVKM MLGRELDTHALQRAGRTLLSDKPVAAFSGFGKKGTIAPFDLQVRPGEIVGLAGLLGSGRT ETAEVIFGIKPADSGSALIKGKPQTLRSPHQASCLGIGFCPEDRKTDGIIAAASVRENII LALQAQRGWLRPVPRKEQNEIAERFIRQLGIRTPNAEQPIEFLSGGNQQKVLLSRWLLTK PQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALLVISSELEELVGYADRVIIMRDRKQ VAEIPLAELSVPAIMNAIAA >gi|283548477|gb|GG730300.1| GENE 315 349125 - 350147 1203 340 aa, chain + ## HITS:1 COG:ECs5207 KEGG:ns NR:ns ## COG: ECs5207 COG1172 # Protein_GI_number: 15834461 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 340 2 341 341 467 92.0 1e-131 MPQSLPQSNPPTRRFRWPKGMPQLVALLLVLLVDSLVAPHFYQVILQDGRLFGSPIDILN RAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAGHSLPVVLLAALGSGILA GLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVTFNSPELSWFGSGSLLLFPTP VIIALLTLVVFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAG IIVTADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVIGALIIQGMNTGILL SGFQPELNQVVKAVVVLCVLVVQSQRFISLIKGVRGHDKT >gi|283548477|gb|GG730300.1| GENE 316 350134 - 351135 1305 333 aa, chain + ## HITS:1 COG:ECs5208 KEGG:ns NR:ns ## COG: ECs5208 COG1172 # Protein_GI_number: 15834462 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 9 329 1 321 323 501 95.0 1e-141 MIKRNLPLMITLGVFMLGYLYCLTQFPAFASTRVICNILTDNAFLGIIAVGMTFVILSGG IDLSVGSVIAFTGVFLAKAIGYWGISPLVAFPLILLMGCAFGAFMGLLIDALKIPAFIIT LAGMFFLRGVSYLVSEESIPINHPVYDMLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL LFIFIALQRGLTVLWENRQSSPVTRVSTAATPK >gi|283548477|gb|GG730300.1| GENE 317 351239 - 352351 1226 370 aa, chain + ## HITS:1 COG:ECs2596 KEGG:ns NR:ns ## COG: ECs2596 COG0840 # Protein_GI_number: 15831850 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 # 61 370 209 518 553 274 56.0 2e-73 MPKSLSIRSSLLVLLSLLAFLLLLTGGMGLYASTRIITSLIYHGIMSAAMLAAIALLAVI WFMLRNKFLKPLDNMVEQLERLATGDLSPVTALSASAEFNRLNAAMDEMRHALGDSVQRV RDASSQIDIGSRELTAGNQHLAQRTESTATSLEQTAASMEELTATVKQNADNAEQAHQLA KSVSDTADRGSEMVCYVIEKMRDIAGSSSRIADILGVIDGIAFQTNILALNASVEAARAG EQGRGFAVVAGEVRNLASRSAEAAKEIRALISDSHTHVGEGSELAQQAGETMDEIATEVM RMTKLMREIASASQEQSRGIEQVNIAVMQMDETAQQNAALVQQSSAATRSLEAQSHALLE AMAAFKLQSA >gi|283548477|gb|GG730300.1| GENE 318 352463 - 353461 1177 332 aa, chain - ## HITS:1 COG:fbp KEGG:ns NR:ns ## COG: fbp COG0158 # Protein_GI_number: 16132054 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphatase # Organism: Escherichia coli K12 # 1 332 1 332 332 670 98.0 0 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV NVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTY DPSLGVFCLSQERMRFPVKGSTYSINEGNYIKFPNGVKKYIKFCQEEDKSTQRPYTSRYI GSLVADFHRNLLKGGIYLYPSTASHPQGKLRLLYECNPMAFLAEQAGGKASDGKERILDI IPESLHQRRSFFVGNDHMVEDVERFIREFPDA >gi|283548477|gb|GG730300.1| GENE 319 353637 - 355013 1748 458 aa, chain + ## HITS:1 COG:STM4416 KEGG:ns NR:ns ## COG: STM4416 COG0773 # Protein_GI_number: 16767662 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Salmonella typhimurium LT2 # 1 454 1 454 459 930 97.0 0 MRIHILGICGTFMGGLAMLARSLGHEVTGSDANVYPPMSTLLEKQGIDLIQGYDASQLDP QPDLVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGM ATWILEACGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEYDCAFFDKRSKFVHYCPRT LILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQEL VGEQGHWQAKKLTTDASEWEVWLDGENVGVVKWGLVGEHNMHNGLMAIAAARHVGVVPAD AANALGSFINARRRLELRGEANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP RSNTMKMGLCKDDLAPSLGRADEVFLLQPPHIPWQVAEVAEACVQPAHWSGDVDALADMV VKTAQPGDHILVMSNGGFGGIHQKLLDGLAKKAQAEEE >gi|283548477|gb|GG730300.1| GENE 320 355113 - 355664 732 183 aa, chain - ## HITS:1 COG:STM4437 KEGG:ns NR:ns ## COG: STM4437 COG3028 # Protein_GI_number: 16767683 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 183 1 183 183 258 94.0 6e-69 MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKHLGVELVKLGKNALDKIPLD ADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVDPIRQALDKLKNRHNQQVVLFHKLEQ LRDRLIVEGDDAVAEVLNLWPNADRQQLRSLIRNAKKEQEGNKPPKSARQIFQYLRELAE NEA >gi|283548477|gb|GG730300.1| GENE 321 355760 - 357112 1574 450 aa, chain + ## HITS:1 COG:STM4438 KEGG:ns NR:ns ## COG: STM4438 COG0312 # Protein_GI_number: 16767684 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Salmonella typhimurium LT2 # 1 450 1 450 450 871 97.0 0 MAFMMKVISQVEAQRKILQEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEF NSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFD APDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGIKVFGNSHGMLQ GYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMGDLQTPEWVGADCARRTLSRLSPRKLS TMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKG LASSPFDSEGVRTERRDIIKDGVLTQWLLTNYSARKLGLKSTGHAGGIHNWRIPGQGLSF EQLLKEMGTGLVVTELMGQGVSGITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKEMWR NIVTVGNDIETRSNIQCGSVLLPEMKIAGQ >gi|283548477|gb|GG730300.1| GENE 322 357199 - 357585 619 128 aa, chain + ## HITS:1 COG:STM4439 KEGG:ns NR:ns ## COG: STM4439 COG3783 # Protein_GI_number: 16767685 # Func_class: C Energy production and conversion # Function: Soluble cytochrome b562 # Organism: Salmonella typhimurium LT2 # 1 128 1 128 128 167 80.0 4e-42 MRKHLLAIVAASTLVLGSSAFAADLEDDMGILNDNLKIVEKTDNATELKDALTKMRAAAL DAQKGTPPKLENKSPDSPEMKDFRHGFDTLIGQIDGALKLANEGKVKEAKAVAEDLKATR NENHKKFR >gi|283548477|gb|GG730300.1| GENE 323 357931 - 358239 419 102 aa, chain + ## HITS:1 COG:no KEGG:ROD_32981 NR:ns ## KEGG: ROD_32981 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 102 7 112 112 162 90.0 3e-39 MNDMGESVELADRMLAQVYALLRERHIIPNAVQEQMLTSHVRAMAHRSVTGESLPEVDAS LFDEISAESMALARDVVAGFGNLPEEEAWLLSVHFEVAKDNL >gi|283548477|gb|GG730300.1| GENE 324 358250 - 358612 614 120 aa, chain + ## HITS:1 COG:no KEGG:ECL_00643 NR:ns ## KEGG: ECL_00643 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 120 1 120 120 194 99.0 1e-48 MEQITVVIGDRLGKGQKVAAGVEKAGGRAVVVPGVAADMKLGDVMKAENATFGISFCGSG GAGAITAQTKYGYKAKYGMRSVDEGVTAINEGCNVLGFGFMDKEELGERLVQAWQKKHGA >gi|283548477|gb|GG730300.1| GENE 325 358615 - 358914 215 99 aa, chain + ## HITS:1 COG:no KEGG:ROD_33001 NR:ns ## KEGG: ROD_33001 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 99 1 99 99 155 93.0 7e-37 MKEQFTTTVRVTGKGDAKARAFADALNHVQAAVMKASPHILLRIEPQDVQVVQARETVRK EAFLFLFLRRERRTFSVELDVTVNVTAINLDKVDFVTQR >gi|283548477|gb|GG730300.1| GENE 326 358937 - 359713 852 258 aa, chain + ## HITS:1 COG:no KEGG:ROD_33011 NR:ns ## KEGG: ROD_33011 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 26 258 26 258 258 427 96.0 1e-118 MFLIILIKSLIIGGLVGVGVGAGAARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGL GFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALMIKNRNVGETLHDPKRMAIACGVIGMI VVTFLNLTASSVPEALQVTAVKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATVFGG AAQLIMGNAVPGLVLGILIGKGVEESGWNHVTKVMMVAIVALFVLSGFFRGFDMKMIESF HLTVPDWLELIHNSLSGK >gi|283548477|gb|GG730300.1| GENE 327 359725 - 360369 1053 214 aa, chain + ## HITS:1 COG:no KEGG:CKO_03587 NR:ns ## KEGG: CKO_03587 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 214 1 214 214 313 97.0 2e-84 MEQNKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVAFVAMLKAGMDTGSYGA VAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLGAGIIFPVANFAASLVTGL VIGLAIGYIIILARKFTINQSDSTYGADVMMGAGNASGRFLGPLIILSAMTASIPIGVGS LLGALLFYIWQKPITGGAILGAMILGSIFPIAIS >gi|283548477|gb|GG730300.1| GENE 328 360438 - 361571 1091 377 aa, chain + ## HITS:1 COG:STM4445 KEGG:ns NR:ns ## COG: STM4445 COG3964 # Protein_GI_number: 16767691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 1 377 1 377 377 694 93.0 0 MFDLLLRRARLVDDTLTNIALQDGKIAALGDVDGPALKTIDLRGECYVSAGWIDSHVHCY PKSPIYHDEPDSVGIATGVTTVVDAGSTGADDIDDFYTLTRDAATEVYALLNISRVGLIA QNELANMANVDADAVRQAVKRHPDFIVGLKARMSSSVVGENGITPLERAKAMQAQNGGLP LMVHIGNNPPDLDEIAERLTAGDIITHCYNGKPNRILTPQGELRASVTRAISRGVRLDVG HGTASLSFAVAKRAIGLGILPHTISSDIYCRNRISGPVHSLANVMSKFLAIGMSLPQVIE CVTAHAADGLRLKNKGRLQIGLDADLTLFTLKRQPTVLVDAENDSLQAEQLLVPLAAIRA GKGYMTEQGSAEHAFDF >gi|283548477|gb|GG730300.1| GENE 329 361555 - 362673 1108 372 aa, chain + ## HITS:1 COG:STM4446 KEGG:ns NR:ns ## COG: STM4446 COG1921 # Protein_GI_number: 16767692 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 372 1 372 372 663 93.0 0 MPSIFEKYALKQVINTSGRMTALGVSTPRPEVVQAAMAGMNQYFEMKDLVNKTGDYIAKL LEVEGATVVSCASAGIALSVAGVLVKDSDWLLENLHVTPIENNEIVLPRGHNVNFGAPVG TMVALGGGKLVEAGYANECSAAQLAAAITPRTAAILYIKSHHCVQKSMLSVEQAAVVART HNLPLIVDAAAEEDLQCYYQVGADLVIYSGAKAIEGPTSGLVIGKTQYVEWVKRQTAGIG RAMKVGKEGILGLTCAIELYLNAQKESGAEMVEKMTPFINTLNQLHGVSARVVWDSAGRD IARTEIKFDEVVTGIATGDLVDALKQGEYAIYFRGYKANEGIIEADVRSVDRAQLEIVAR RIGEVISQEKNA >gi|283548477|gb|GG730300.1| GENE 330 362670 - 363410 828 246 aa, chain + ## HITS:1 COG:no KEGG:CKO_03584 NR:ns ## KEGG: CKO_03584 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 246 1 246 246 460 93.0 1e-128 MKLTPNFYRDRVCLNVLAGSKENAREIYAAAEGHVLVGVLSKNYPDVASAVADMQEYAAL IDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVATSRALLGQQETVVNGLVSPT GTPGLVKISTGPLSSKAPDGIVPVETAIALLKDMGGSSIKYFPMGGLQCREEYIAVAQAC ARHDFWLEPTGGIDLDNFTEILQIALDAGVSKIIPHIYSSIIDKVSGNTRPDDVRQLMAM TRACVG >gi|283548477|gb|GG730300.1| GENE 331 363432 - 365345 1908 637 aa, chain + ## HITS:1 COG:STM4448_1 KEGG:ns NR:ns ## COG: STM4448_1 COG3711 # Protein_GI_number: 16767694 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Salmonella typhimurium LT2 # 1 513 1 513 513 856 82.0 0 MRFPNQRLAQLFGMLQNEALPQDELAQRLSVSTRTVRADISALNALLTQYGAQFILSRGN GYQLKIDDPASYHALQTQRPDALLRIPRTSQERIHWLVVRFLTSAFSLKLEDLADEWFIS RATLQNDMAEVREHLQRYHLTLETRPRHGMKLFGSEMAIRACLTDLLWTLAQQDPQHPLV TQEALNAGLPEQLQPVLQDIFARFHIRLTDEGELFLRLYCAVAVRRISEGYPLPEFAAEE AEPSVCLATREIAAVLHRLADKPLSVAEENWLQVHIAARQVQEIAPSAINADDDEALVNY ILRFINSQYNYNLLNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTL AAVSGWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQRQPKVLLVCDAGNAMARMIEA VLARKYPQIDIVDTVTLRDYEQRESISEDFVISTARVGEKDKPVVMIAPFPTDYQLEQIG KLVLVDRTRPWMLNKFFDADHFRVIDGPMDQQTLFNTLCRQLQDEGFVDAEFLDSVVERE AIVSTMLGDSIALPHSLGLLAKKTVVYTILAPQGIAWGDETAHVIFLLAISKSEYEEAMA IYDIFVTFLRERAMTRLCACRNFTEFKTVAMECVSRF >gi|283548477|gb|GG730300.1| GENE 332 365423 - 365665 218 80 aa, chain + ## HITS:1 COG:STM4449 KEGG:ns NR:ns ## COG: STM4449 COG3077 # Protein_GI_number: 16767695 # Func_class: L Replication, recombination and repair # Function: DNA-damage-inducible protein J # Organism: Salmonella typhimurium LT2 # 1 80 1 80 80 129 97.0 1e-30 MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTLSDSEDELIQ TVRERLASPQKGIKVSLDDL >gi|283548477|gb|GG730300.1| GENE 333 365655 - 365939 288 94 aa, chain + ## HITS:1 COG:STM4450 KEGG:ns NR:ns ## COG: STM4450 COG2026 # Protein_GI_number: 16767696 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Salmonella typhimurium LT2 # 1 94 1 94 94 151 97.0 3e-37 MTYELEFDPRALKEWHKLGGTVKAQLKKKLADVLLNPRIDSARLNGLPDCYKIKLKSSGY RLVYQVRDEVVIVFVVAVGKREHSAVYHDANKRL >gi|283548477|gb|GG730300.1| GENE 334 365943 - 366407 492 154 aa, chain - ## HITS:1 COG:STM4451 KEGG:ns NR:ns ## COG: STM4451 COG0602 # Protein_GI_number: 16767697 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Salmonella typhimurium LT2 # 1 154 1 154 154 322 96.0 1e-88 MRYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRLNSGEPFTKEMEDKIVADLN DTRIHRQGISLSGGDPLHPQNVPDILQLVQRIRAECPGKDIWVWTGYKLDELNAAQMQVV DLINVLVDGKFMQDLKDPALIWRGSSNQVVHHLR >gi|283548477|gb|GG730300.1| GENE 335 366528 - 368666 2580 712 aa, chain - ## HITS:1 COG:STM4452 KEGG:ns NR:ns ## COG: STM4452 COG1328 # Protein_GI_number: 16767698 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Salmonella typhimurium LT2 # 1 712 1 712 712 1480 97.0 0 MTPHVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVSSLMNERSQVDINE IQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQEIRGLVEQTNSALLNENANK DSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIHYHDLDYSPFFPMFNCMLIDL KGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTESF NKHRKTAEEWQIPDADGYAHSRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTS WESRLIQQSILRNRIAGLGKNRKTAVFPKLVFAIRDGLNHKFGDPNYDIKQLALECASKR MYPDILNYDQVVKVTGSFKTPMGCRSFLGVWENENGEQVHDGRNNLGVISLNLPRIALEA HGDEATFWKLLDDRLALARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVSEIF KNGRASISLGYIGIHETINALFGDKHVYDSEQLRAKGIAIVERLRQAVDRWKDETGYGFS LYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPL ANGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGF TCPKCGNHDAARVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG >gi|283548477|gb|GG730300.1| GENE 336 369076 - 370728 1775 550 aa, chain - ## HITS:1 COG:STM4453 KEGG:ns NR:ns ## COG: STM4453 COG0366 # Protein_GI_number: 16767699 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Salmonella typhimurium LT2 # 1 550 1 550 550 976 84.0 0 MNIPHWWQNGVIYQVYPKSFQDTTGSGTGDLRGVTQRLGYLQKLGVDAIWLTPFYISPQV DNGYDVADYMSVDPAYGTLADFDELVAAAKARGIRIILDMVFNHTSTQHAWFRDALDKDS PYRQFYLWRDGEPTAPPNNWQSKFGGSAWGWHAESEQYYLHLFAPEQADLNWENPAVRAE LKKVCEFWADRGVDGLRLDVVNLISKDRDFPNDPDGDGRRFYTDGPRAHEFLREMNRDVF TPRSLMTVGEMSSTTLENCQQYAALDGSELSMTFNFHHLKVDYPNGEKWTLAKPDYVALK TLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGKYRVQAAKMLAMVLHGMQGTPYIY QGEEIGMTNPHFRQITDYRDVESHNMFATLNGQGRDAEELLAILASKSRDNSRTPMQWDA SQHAGFTAGEPWINLCDNAAGINVAAALDDADSVFYTYQKLIALRKTEPVITWGDYQDLF PDSPHLWCYQREWQGQRLLVIANLSNTFQSWQAPQTAGNWQVLMHNYAEVASQPGDMTLR PFEAVWWVQK >gi|283548477|gb|GG730300.1| GENE 337 370778 - 372196 1796 472 aa, chain - ## HITS:1 COG:ECs5217_2 KEGG:ns NR:ns ## COG: ECs5217_2 COG1263 # Protein_GI_number: 15834471 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Escherichia coli O157:H7 # 93 472 2 381 381 663 93.0 0 MSKIKQADIDRLIELVGGRDNIATVSHCITRLRFVLNQPANARPKEIEQLPMVKGCFTNA GQFQVVIGTEVGDYYQALLATTGQASADKEQAKKAARQNMKWHEQLISHFAEIFFPLLPA LISGGLILGFRNVIGDLPMSNGQTLAQMHPSLKTLYDFLWLIGEAIFFYLPVGICWSAVK KMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPEVWNFGLFSIEKVGYQAQVIPALLAGLA LGFIETRMKRIVPDYLYLVIVPVCSLILAVFLAHAFIGPFGRWIGDGVAFAVRHLMTGSF APIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIII SSRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSGLAGLLCGLNGVMAN GIGVGGLPGILSIQPTYWQVFGLAMVIAIVIPMVLTSFVYQRKYRQGTLQIV >gi|283548477|gb|GG730300.1| GENE 338 372353 - 373300 1028 315 aa, chain - ## HITS:1 COG:STM4455 KEGG:ns NR:ns ## COG: STM4455 COG1609 # Protein_GI_number: 16767700 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 315 1 315 315 570 90.0 1e-162 MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSERTRERVEAVMNQHGFSPSRSARAMRGQ SDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPELVEEHLGMLRRRNID GVVLFGFTGITETMLTSWQDSLVLLARDAKGFASVCYDDEGAIHTLMQRLYDREHRHISF LGVPHSDVTTGKRRHEAYLAFCKKHKLHPVAALPGLAMKQGYEQAANVITPETTALVCAT DTLALGVSKYLQEQRIENLQLASVGSTPLMKFLHPEIVTVDPGYAEAGRQAASQLIEQIN GRSEPRQIVIPATLS >gi|283548477|gb|GG730300.1| GENE 339 373688 - 376396 3265 902 aa, chain + ## HITS:1 COG:STM4456 KEGG:ns NR:ns ## COG: STM4456 COG0474 # Protein_GI_number: 16767701 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Salmonella typhimurium LT2 # 1 902 1 902 902 1690 92.0 0 MFKNITRQLFARLNRHLPHRLVHRDPLPNAQTVASTPIPPSLSEHCLKMAQMDEGALWKT FDAHPEGLNAAEVENAREIHGENQLPAQKPSPWWVHLWVCYRNPFNILLTILGAISYATE DLFAAGVIALMVAISTLLNFVQEARSTKAADALKAMVSNTATVLRVINEKGENGWVELPI DQLVPGDVIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKVATSRDPQQSNPLEC DTLCFMGTNVVSGTAQAIVIATGANTWFGQLAGRVSEQESEQNAFQKGIGRVSMLLIRFM LVMAPIVLIINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVK HLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKPSEHVLHSAWLNSHYQTGLKNL LDTAVLEGVDEESARQLSTRWQKIDEIPFDFERRRMSVVVAEETAVHQLVCKGALQEILS VCTQVRHNGEIVPLDEGMLRRVKRVTDTLNRQGLRVVAVATKYLPAREGDYQRIDESDLI LEGYIAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKVCHEVGLDAGDAVIGSSI EGLSDDELAKLAQRTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGI SVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFSNMLKYIKMTASSNFGNVFSVLVA SAFLPFLPMLPLHLLIQNLLYDVSQVAIPFDNVDEEQIKKPQRWNPAELGRFMIFFGPIS SIFDILTFCLMWFVFHANTPEHQTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSRSSWP LMLMTLIVMVVGIALPFSPLASYLQLQALPLSYFPWLIAILAGYMTLTQLVKGFYSRRYG WQ >gi|283548477|gb|GG730300.1| GENE 340 376775 - 377752 534 325 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020579|ref|YP_526406.1| ribosomal protein L22 [Saccharophagus degradans 2-40] # 2 308 10 314 331 210 34 1e-52 MKLTKNLLTLCVGASVLLASHITLAQTFRAADVHPADYPNVVAVKHMGEKLSAATDGRLE IKTFPGGVLGDEKQMIEQAQLGAIDIIRVSMTPVAAILPEINVFTLPYIFRDEDHLHKVL DGTIGQEIGDRLTANPKSRLIFLGWMDAGTRNLITKNPVVKPEDLHGMKIRVQGSPIALD TLKAMGANSVVMGVSEVFSGMQTGVIDGTENNPPTFVAHNYLPVVKNYTWSKHFIIPELF LFSKAKWDKLKKEDQELIIKLAKEAQVEQRKLWQEYNAKSLETMKANGVQFHDIDTDYFY KATQSVRDNYGKDHQDLIKRIQDVK >gi|283548477|gb|GG730300.1| GENE 341 377815 - 378324 411 169 aa, chain + ## HITS:1 COG:YPO1578 KEGG:ns NR:ns ## COG: YPO1578 COG3090 # Protein_GI_number: 16121848 # Func_class: G Carbohydrate transport and metabolism # Function: TRAP-type C4-dicarboxylate transport system, small permease component # Organism: Yersinia pestis # 1 168 1 168 168 217 67.0 6e-57 MGECYSSVMNFLYRVSMWIAGIALLVMVAIIPIGIFARYVLNNALSWPEPVAILCMVTFT FIGAAVSYRAGSHIAVSMVIDRLGDCARRYCSIVADIMLVAISLFILWYGTNLCLELWDQ PVAEFPLLSAGQNYLPLPIGSAITLLFIAEKIFRGPQYQRPVVMLGSTS >gi|283548477|gb|GG730300.1| GENE 342 378356 - 379642 947 428 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126646729|ref|ZP_01719239.1| Ribosomal protein L16 [Algoriphagus sp. PR1] # 1 427 4 431 431 369 43 1e-100 MDAFILVFTLGIMLAIGVPVAYAVGISAIIGAWYIDIPLEAVMIQLTSGVNKFSLLAIPF FILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV MIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSIAALFIAGILPGL LLSFSLMVMCVAFAHKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGIFTATE SAAIACLWAFFVTMFIYRDYKWSELPKLMFRTVKTVTIVMILIGFAAAFGAVMTYMQLPM RITEAFTSISDNKYVILMCINIMLLLIGTLMDMAPLILILTPVLLPVTNALGIDPVHFGM IMLVNLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPFYAVLFLVLMLVTYIPAISLF LPKLFGVM >gi|283548477|gb|GG730300.1| GENE 343 379733 - 380119 460 128 aa, chain - ## HITS:1 COG:STM4458 KEGG:ns NR:ns ## COG: STM4458 COG0251 # Protein_GI_number: 16767703 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Salmonella typhimurium LT2 # 1 128 1 128 128 218 99.0 3e-57 MSKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVSEDVSAQARQSLENVKAI VEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIE IEAIAVRR >gi|283548477|gb|GG730300.1| GENE 344 380196 - 380657 603 153 aa, chain - ## HITS:1 COG:STM4459 KEGG:ns NR:ns ## COG: STM4459 COG1781 # Protein_GI_number: 16767704 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Salmonella typhimurium LT2 # 1 153 1 153 153 293 95.0 7e-80 MTHDNKLQVEAIKRGTVIDHIPAQVGFKLLTLFKLTETDQRITIGLNLPSGEMGRKDLIK IENTFLTNEQVNQLSLYAPQATVNRIDDYDVVGKSRPSLPERIDNVLVCPNSNCISHAEP VSSSFAVKKRADDIALKCKYCEKEFSHYVVLAN >gi|283548477|gb|GG730300.1| GENE 345 380671 - 381606 1155 311 aa, chain - ## HITS:1 COG:STM4460 KEGG:ns NR:ns ## COG: STM4460 COG0540 # Protein_GI_number: 16767705 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Salmonella typhimurium LT2 # 1 311 1 311 311 597 96.0 1e-170 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF ETSMHRLGASVVGFSDSSNTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS GNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLQIAMVGDLKYGRTVHSLTQALAKF EGNRFYFIAPDALAMPQYILDMLTEKGIAWSLHGTIEEVMAEVDILYMTRVQKERLDPSE YANVKAQFVLRASDLTGARANMKVLHPLPRIDEITTDVDKTPHAWYFQQAGNGIFARQAL LALVLNSELAL >gi|283548477|gb|GG730300.1| GENE 346 381843 - 382322 337 159 aa, chain - ## HITS:1 COG:STM4463 KEGG:ns NR:ns ## COG: STM4463 COG1438 # Protein_GI_number: 16767708 # Func_class: K Transcription # Function: Arginine repressor # Organism: Salmonella typhimurium LT2 # 1 159 1 159 162 277 88.0 6e-75 MKEFDDYSAKEQKQLAMCQRLITEKSYLSQEALRRDLQSHGFTSISQSTVSRLLKLLGAI KIRNTKGQKIYSVNPQSRPAPDAARSIAEMVVSIEHNSEFILIHTAAGYGRAVARILDYH ALPEVLGVIAGSSIVWVAPRVVQRTGLVHKQINYLFKMN >gi|283548477|gb|GG730300.1| GENE 347 382467 - 383870 1189 467 aa, chain - ## HITS:1 COG:STM4464 KEGG:ns NR:ns ## COG: STM4464 COG1288 # Protein_GI_number: 16767709 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 467 1 467 467 750 94.0 0 MGKFKFPSAYTILFILIALVAVMTWIVPAGKYQMAMNATLGKEVPVAGTYAPTEAHPQGI TAVLLAPIDGLYNHETYTAGAIDVALFVLIIGGFLGVVNKTGAIDAGIERVTVRLNGKEE WMIPILMGLFAAGGTIYGMAEESLPFYTLLVPVMMAARFDPLVAAATVLLGAGIGTLGST INPFATVIAANAAGIPFTQGMLMRILLLVAGYIICVVWVMRYARKVRSHPELSIVADKME ENRAHFLGNRANTNLEFTATRKWILLIFAAAFAVMIYGVAVLGWWMAEISGVFLAAAIIV GVIARMSEEAFTSTFIDGARDLLGVALIIGIARGIVVVMDNGMITHTILHSAENLVSGLS TTIFINVTYWLEVLLSFLVPSSSGLAVLTMPIMAPLADFAHVQRDLVVTAYQSASGIVNL ITPTSAVVMGGLAIARVPYVRYLKWVAPLLLILTLLNMVVLSIGAML >gi|283548477|gb|GG730300.1| GENE 348 383926 - 384930 1106 334 aa, chain - ## HITS:1 COG:STM4465 KEGG:ns NR:ns ## COG: STM4465 COG0078 # Protein_GI_number: 16767710 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 636 91.0 0 MTVNLKNRNFLKLLDYTPAEIQYLIDLAIELKTAKKAGRERQTLVGKNIALIFEKTSTRT RCAFEVGAFDQGAQVTYLGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQEIVEELGQ FAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAK MGMDIRLVAPKSFWPDETLVAECREIAGVTGARITLTEDVEEGVYDVDFLYTDVWVSMGE PKEAWAERVSLMTPYQINQRVIDATGNPNVKFMHCLPAFHNEHTKVGREIEAAYGLKGLE VTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD >gi|283548477|gb|GG730300.1| GENE 349 384986 - 385918 1022 310 aa, chain - ## HITS:1 COG:STM4466 KEGG:ns NR:ns ## COG: STM4466 COG0549 # Protein_GI_number: 16767711 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Salmonella typhimurium LT2 # 1 310 1 310 310 551 90.0 1e-157 MENKPTLVVALGGNALLKRGEPLEADIQRKNIELAAKTIARLTQQWRVILVHGNGPQVGL LALQNSAYANVTPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDAHDPAF SNPTKYIGPIYDETQASALQAEKGWIFKADGQAFRRVVPSPQPKRIVESDAIQALIARDH LVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQLHADALLILTDADAVYLDWGKP TQRPLSQVTPERLGDMQFDAGSMGPKVTACANFVSQCHGIAGIGSLADGPAILSGEKGTL IRPETADANA >gi|283548477|gb|GG730300.1| GENE 350 385928 - 387148 619 406 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988789|ref|ZP_01820204.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP6-BS73] # 6 406 8 409 409 243 36 2e-62 MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQ EGIEVLLLTDLLTQTLDIPDAKRWLLDTQISDYRLGPTFAADVRAWLADMQHRELARHLS GGLTYGEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKTARQRE TNNLRAIYRWHPQFADGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQG IEFLAQSLFNHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVQCWTLT PDGRGGLKRTQESTLVHALEKALGLDQIRLITTGGDAFEAEREQWNDANNVLTLRPGVVV GYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLERDGI >gi|283548477|gb|GG730300.1| GENE 351 387820 - 388272 628 150 aa, chain + ## HITS:1 COG:yjgK KEGG:ns NR:ns ## COG: yjgK COG2731 # Protein_GI_number: 16132074 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 147 4 150 153 263 86.0 7e-71 MIVGNIHNLDAWLPEELRQAIEHIKAHVTDATEKGKHEIDGDRLFYLIAEDMTEPCAQRR AEYHARYLDIQILLKGQEGMTFSTQPAGAPETDWLADKDIAFLPEGSQEKTVVLNEGDFV VFYPGEVHKPLCAVGAPARVRKAVVKMRVE >gi|283548477|gb|GG730300.1| GENE 352 388453 - 389457 1015 334 aa, chain - ## HITS:1 COG:ECs5231 KEGG:ns NR:ns ## COG: ECs5231 COG0078 # Protein_GI_number: 15834485 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 616 89.0 1e-176 MSAFYQKHFLKLLDFTSAELTSLLQLAAQLKADKKNGTEVARLTGKNIALIFEKDSTRTR CSFEVAAYDQGARVTYLGPNGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEY AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYTGDARNNMGNSMLEAAALT GLDLRLVAPRACWPEEHLVAECKALAQKNGGNITLTEDIATGVKGADFIYTDVWVSMGEA KEKWAERIALLRKYQVNSAMMALTGNPQVKFLHCLPAFHDDQTTLGKQMAQQYGLHGGME VTDDVFESPASIVFDQAENRMHTIKAVMVATLAK >gi|283548477|gb|GG730300.1| GENE 353 389621 - 390046 699 141 aa, chain + ## HITS:1 COG:ECs5232 KEGG:ns NR:ns ## COG: ECs5232 COG3076 # Protein_GI_number: 15834486 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 120 1 120 138 175 94.0 2e-44 MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFETLEKAAVEAFKLGYEV TEPEELEVEEGDTVICCDILSECALNAELIDAQVEQLMNLAEKFDVEYDGWGTYFEDPNG EEGEDGDDEDFVDEDDDGVRH >gi|283548477|gb|GG730300.1| GENE 354 390098 - 390856 848 252 aa, chain + ## HITS:1 COG:STM4471 KEGG:ns NR:ns ## COG: STM4471 COG4445 # Protein_GI_number: 16767716 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA # Organism: Salmonella typhimurium LT2 # 1 252 17 268 270 445 86.0 1e-125 MDYPQILSPIHNFLHCKTPQAWLDKARDPANLPLLLTDHLVCELKAAQTAMLLVRKYVAD KQGSLALLDWLKPYEAFAFREGEEPDFVALNKQIGKSVMPQTDDPWGRQLIDSMILLIKE ELHHFWQVREAMMSRNIPYVKITASRYAKGMLKEVRTHEPLTLIDKLICGAYIEARSCER FAALAPYLDEDLQAFYLSLLRSEARHYQDYLALAQQVSADDISGRVRFFGEVEAALITSP DDEFRFHSGVPA >gi|283548477|gb|GG730300.1| GENE 355 391023 - 391853 892 276 aa, chain + ## HITS:1 COG:no KEGG:Entcl_3894 NR:ns ## KEGG: Entcl_3894 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 276 1 276 276 457 84.0 1e-127 MNWTHVLLAGYIGAVIAIVVGMFRKKGWLGKISGAVVFVVAIIAWNLFDVHYLIPRESPD YGLTEEQQFEKAMLSNPAFQVIKEQEPALTQKIISQAAQMKKAGSSEQQVIDAIQPQILQ LQMARLQQAPDANVIEYMKINLEQIAAVAKIGDDECFRFLFPAVKGGINPARLVPREIMD RRMASDMSMMYASNGPNKHTVTAEEKQLALQDLQGISPGLVQRYGADIQIMADPTKAVGK EKIACEIVQDLWTQVLKLPTARSAGVIRLMLSAEMQ >gi|283548477|gb|GG730300.1| GENE 356 391879 - 392382 562 167 aa, chain - ## HITS:1 COG:STM4473 KEGG:ns NR:ns ## COG: STM4473 COG0454 # Protein_GI_number: 16767718 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 1 167 1 167 167 279 87.0 2e-75 MNVVLSSALKLRRITETDNAAIAAVIRRVSAEYGLTADKGYTVADPNLDELFQVYSQPGA AYWVVEQNGEVVGGGGVAPLGCSEPDICELQKMYFLPSARGQGLAKKLALMALDHAREQG FKQCYLETTAFLTEAIRLYEHLGFEHISEALGCTGHVDCEVRMLKPL >gi|283548477|gb|GG730300.1| GENE 357 392577 - 393767 914 396 aa, chain + ## HITS:1 COG:STM4474 KEGG:ns NR:ns ## COG: STM4474 COG4269 # Protein_GI_number: 16767719 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 396 1 395 395 441 59.0 1e-123 MNDFLRGQENRNHTFVFTGKGWQYFTICLVNFLLSCITLGIYAPWAIVKCRRYIYENMTL NGQPFAYKATGGAIFVSFLLIMVIYGAGINFITHGSHLIGFTLIGLLVALLPLMAIKSLQ YQAAMTSLNGVRFGFSCSKLQAWLYMLVVPVVLSLVNWGVIYLLTLATQWLDGSTGMLIR IAFIALVGIVGMGITYGITYAKWIQLIGNGGNFGIHRFAIDVNMKACVIGCIKAVLVLLP FIIVIAWLIAPVFLQMMMLAVLGTANESFLLENQSRIIACYFLYFAGIIVVVSYLYVTLR NLFINNLRLAEGEIRFRSTVKAHDMVWRFVLVMFISGITFALAYPWMKMWLVRWLANNSH VQGDLDSLELTNDDSALETGPAMWLSRGVMPYFPFI >gi|283548477|gb|GG730300.1| GENE 358 393895 - 396750 3720 951 aa, chain - ## HITS:1 COG:STM4475 KEGG:ns NR:ns ## COG: STM4475 COG0525 # Protein_GI_number: 16767720 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 951 1 951 951 1884 96.0 0 MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESKESFCIMIPPPNVTGSLHMGHAFQQTIMD TMIRYQRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWQWKAE SGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLR TAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETILGDTGVAVNPEDP RYKDLIGKFVILPLVNRRIPVVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHALPMINI LTFDGDIRETAEVYDTKGEESDVYSSEIPAEFQKLERFAARKAIVAAVDALGLLEEIKPH DLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDI QDWCISRQLWWGHRIPAWYDEAGNVYVGRTEDEVRQENNLGADVQLRQDEDVLDTWFSSA LWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHT VYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLAEKIAKRTEK QFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGND CGFNGGEMTLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELT KPVMNGGSESELRGTRNTLVTVLEGLLRLAHPIIPFITETIWQRVKVICGISADTIMLQP FPEYNAAQVDEAAASDTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAMRRVNDN RSFLLNLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVTKID GEIARIEGKLSNEGFVARAPEAVIAKEREKLDGYAEAKAKLIEQQAVIAAL >gi|283548477|gb|GG730300.1| GENE 359 396750 - 397193 365 147 aa, chain - ## HITS:1 COG:STM4476 KEGG:ns NR:ns ## COG: STM4476 COG2927 # Protein_GI_number: 16767721 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, chi subunit # Organism: Salmonella typhimurium LT2 # 1 147 14 160 160 271 90.0 3e-73 MKNATFYLLDNDTQQDGLSAVEQLVCEIAAERWRAGKRVLIACENEKQALRLDEALWARP AESFVPHNLAGEGPRGGAPVEIAWPEKRNSSPRDLLISLRVGFADFATAFTEVIDFVPYE DSLKQSARDRYKAYRVAGFNLNTATWK >gi|283548477|gb|GG730300.1| GENE 360 397338 - 398849 1724 503 aa, chain - ## HITS:1 COG:STM4477 KEGG:ns NR:ns ## COG: STM4477 COG0260 # Protein_GI_number: 16767722 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Salmonella typhimurium LT2 # 1 503 1 503 503 986 98.0 0 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR NNYWKVRQAVETAQETLYSFDQLKTTKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAI AAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVG NGSQNESLMSVIEYKGVESEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAV YGVMRMVAELQLPINVVGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLC DVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMSNHNPLAHELIGASEQAGDRAWRL PLGDEFQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKG ATGRPVALLSQFLLNRAGFNGEE >gi|283548477|gb|GG730300.1| GENE 361 399117 - 400217 1043 366 aa, chain + ## HITS:1 COG:STM4479 KEGG:ns NR:ns ## COG: STM4479 COG0795 # Protein_GI_number: 16767724 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Salmonella typhimurium LT2 # 1 366 1 366 366 613 95.0 1e-175 MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWA GPWSSRHQDEVLADAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFNDVFLAQIRPK GNARPSVVVADSGHLTQMRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVA LDPNDTDQMDMRTLWKTDNDRARAELTWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML PAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWAVNLLYLALAIVLNLWDTVPMRRLRARF LHKGAV >gi|283548477|gb|GG730300.1| GENE 362 400217 - 401299 1667 360 aa, chain + ## HITS:1 COG:STM4480 KEGG:ns NR:ns ## COG: STM4480 COG0795 # Protein_GI_number: 16767725 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Salmonella typhimurium LT2 # 1 360 1 360 360 629 95.0 1e-180 MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAMGAGLYTLLSA PKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAI GEWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGDSFVYIERVKGDAELGGISIYSF NDKRRLQSVRYAASATFDPEQKIWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLG VVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGPL RSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRKS >gi|283548477|gb|GG730300.1| GENE 363 401555 - 403057 1786 500 aa, chain - ## HITS:1 COG:yjgR KEGG:ns NR:ns ## COG: yjgR COG0433 # Protein_GI_number: 16132085 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli K12 # 1 500 1 500 500 905 93.0 0 MSAPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVK GDLTGVAQEGQASEKLLARLNNIGITDWQPHANPVTVWDIFGEKGHPVRATVSDLGPLLL ARLLNLNDVQSGVLDIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASV GAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDASGKGMINILSAEKLYQMPKLYAASLL WMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFV SQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKTAAQTMRANPAFDTEKAIQELGTGE ALISFLDAKGSPSVVERAMVIAPCSRMGPVTDDERNGLINHSSLYGKYEEEIDRESAYEL LQKGVQATTEQQNTPATNGKTVAVDDGILGGLKEILFGSTGPRGGKRDGVVQSVAKSAAR QVTNQIIRGMLGSLMGGRKR >gi|283548477|gb|GG730300.1| GENE 364 403137 - 404114 1073 325 aa, chain - ## HITS:1 COG:STM4481 KEGG:ns NR:ns ## COG: STM4481 COG1609 # Protein_GI_number: 16767726 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 325 8 332 332 604 92.0 1e-173 MQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAQIMEEINYIPNRAPAMLLNAQSYTLG VLIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRESEEESVINLLSYNIDGMILSE KYHTLRTVKFLRSANIPVVELMDIKGDRLDMEVGFDNRQAAFDMVSTMLDKRQRRKILYL GSKDDVRDEQRYRGYCDAMTRRGLAPLRVNPRSISSIHLGTQMMRDALAAHPDLDGVFCT NDDIAMGALLLCRERELAVPEQISIAGFHGLEMGRQMIPSLASVITPRFDIGRMAAQMLL SKIKNNDHNHNTVDLGYQIYHGHTL >gi|283548477|gb|GG730300.1| GENE 365 404188 - 405507 1659 439 aa, chain - ## HITS:1 COG:idnT KEGG:ns NR:ns ## COG: idnT COG2610 # Protein_GI_number: 16132087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli K12 # 1 439 1 439 439 692 96.0 0 MPLIIIAAGVALLLVLMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGGTLGG LAMILGFGAMLGKLISDTGAAQRIATTLIGTFGKKRVQWALVITGLVVGLAMFFEVGFVL LLPLVFTVVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFI ITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFTEEEMPSFWNSIFAAVIPVILMAVAA VCEITLPKTNSVRVFFEFIGNPAVALFIAIVLAIFTLGRRNGRTIEQIMDIIGDSIGAIA MIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTSLSPLLMCWTVAALLRIALGSATVAAIT TAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLSVGETLRTWTVME TLISIMGLLGVLALNAILH >gi|283548477|gb|GG730300.1| GENE 366 405631 - 406395 187 254 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 10 252 4 242 242 76 25 2e-12 MNDLFSLDGKNILITGSAQGIGYLLATGLGKYGAQIIVNDITPERAETAVARLQQEGIRA VAASFNVTHKQDIDTAIDHIEKDVGPIDVLVNNAGIQRRHPFTEFPEQDWNDVIAVNQTA VFLVSQAVTRRMVERQAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHN IQVNGIAPGYFKTEMTKALVEDEAFTSWLCKRTPAARWGDPQELIGAAVFLSSKASDFVN GHLLFVDGGMLVAV >gi|283548477|gb|GG730300.1| GENE 367 406407 - 407450 1065 347 aa, chain - ## HITS:1 COG:STM4484 KEGG:ns NR:ns ## COG: STM4484 COG1063 # Protein_GI_number: 16767729 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 343 1 343 343 650 89.0 0 MQVKTQSCVVAGKKTVAITNQNIEWNNKGTLVQITRGGICGSDLHYYQEGKVGNFTVKAP MILGHEVIGKVVHSDSKELPAGQSVAINPSKPCGHCKYCLQHEENQCTEMRFFGSAMYFP HVDGGFTRFKTVDTAQCIPYPQEADEKVMAFAEPLAVAIHAAHEAGDLQGKRVFISGVGP IGCLIVSAVKTLGAAEIVCADISSRSLSLAQQMGADMLINPQQDSLDAWKKEKGYFDVSF EVSGHPSSITTCLEVTRAKGVMVQVGMGGAVPDFPMMMLIGKEIALKGSFRFTTEFNTAV SWLANNVIDPLPLLSAEYPFTELEQALIFAGDKTQAAKVQLVFEDIK >gi|283548477|gb|GG730300.1| GENE 368 407668 - 408189 450 173 aa, chain + ## HITS:1 COG:idnK KEGG:ns NR:ns ## COG: idnK COG3265 # Protein_GI_number: 16132090 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconate kinase # Organism: Escherichia coli K12 # 1 173 1 173 187 318 87.0 2e-87 MAGESYILMGVSGSGKSLIGSKVAAVLSAKFIDGDDLHPAKNIDKMSEGIPLTDEDRLPW LARLNDASYSLYKKNETGFIVCSSLKKQYRDILRQGSPNVHFLWLDGDYETILARMQRRA GHFMPVGLLKSQFDALEPPQEDERDIARIDVNHDIEHVTEQCRQAVLAFRNGQ >gi|283548477|gb|GG730300.1| GENE 369 408220 - 409239 1244 339 aa, chain - ## HITS:1 COG:STM4486 KEGG:ns NR:ns ## COG: STM4486 COG1064 # Protein_GI_number: 16767731 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 339 1 339 339 630 92.0 1e-180 MSMIKSYAAKEAGSELELYEYDAGDLKPEDVEVQVDYCGICHSDLSMIDNEWGFSQYPLV AGHEVIGRVAALGSAAQDKGLKVGQRVGIGWTARSCGHCDACISGNQINCLQGAVPTILN RGGFAEKLRADWQWVIPLPESIDLAAAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGL GHIAIKLLRAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDRDALKALAGQFDLIINTVN VDLDWQPYFEALAYGGHFHTVGAVMKPLPVPAFTLIAGDRSISGSATGTPFELRKLMKFA GRSNVSPTTELYPMSQINEAIQHVRDGKARYRVVLKADF >gi|283548477|gb|GG730300.1| GENE 370 409314 - 409895 414 193 aa, chain - ## HITS:1 COG:VC0813 KEGG:ns NR:ns ## COG: VC0813 COG0500 # Protein_GI_number: 15640831 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Vibrio cholerae # 1 192 1 192 192 181 47.0 5e-46 MTLEYYQRHAQDFFSSTVNVDMESLYKPFLQRITEGGRILDAGCGSGRDSKAFFEKGYRV EAFDASSEMVNLASQHAGLRVRQMTFNDIANIEHYDGIWCCASLLHVSAEELPSVMSKLA HALKKGGTWYVSFKYGEAERVKDGRHFTDLTEQGLEKLIAPLTDITLISSWTTRDKRPDR DERWLNALLQKRP >gi|283548477|gb|GG730300.1| GENE 371 409895 - 410908 369 337 aa, chain - ## HITS:1 COG:no KEGG:Pvag_3748 NR:ns ## KEGG: Pvag_3748 # Name: not_defined # Def: hypothetical protein # Organism: P.vagans # Pathway: not_defined # 1 337 1 337 337 479 65.0 1e-134 MRFYQVEPTLENYWRGIILFGKNVASYKFALAHALYDLKPDGSDLIALEDLAVPFSGHLC RHLKHAPKQITSRSSQFIAACTQFNNGEITRGELTAITVRQGFNNVIDAFHNVNQGEIEK RFFIDERKTHKGIRMTDNFYNLGERLQYRNFSFETDARWNLVEQGWAMNISSHLINIEYD DDDQMLFSRNSDRRVAISSCRDSLNGYQKGRCFYCFAPISLQAGDDTFADVDHFIPWKAR GHVANIDGVWNLVLACKECNRGGKGKFAQLPSTRLLQRLRDRNEYFINSHLPLRETLIRQ TGATQTQRNTFLNDRWNEAIKILFHQWEPIAQGTDTF >gi|283548477|gb|GG730300.1| GENE 372 411432 - 412358 792 308 aa, chain - ## HITS:1 COG:YPO0961 KEGG:ns NR:ns ## COG: YPO0961 COG0582 # Protein_GI_number: 16121264 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 215 306 2 93 102 82 45.0 1e-15 MTFEQILEEYFFARLLRPDTQSCYRTAVNQFTHWRNVLPAEVTSHMVLEWRHYLLNVRRI KPVSWNHYMRHMRALYNFAIEQGLLEQFINPFQKTSLRESRKKKKTLTREQIVASRKVLN QFIEREKMQCGYRSPLYPAWFWLTVVETFNYTAIRLNQLIHLRVRDIDLVHDTLFIQIEG SKSHDEHIVPIASRLRPYLEHLLEEAKTKGIRADDQLFNINRFSRRTLRQGKPMTENQVS YFFAKLSDACHSRFSSHRYRHTVATELMQKPEQNLYVTQKLLGHRDIKVTLSYIEHNVEM LRSCVERD >gi|283548477|gb|GG730300.1| GENE 373 412348 - 413967 872 539 aa, chain - ## HITS:1 COG:no KEGG:EC55989_4900 NR:ns ## KEGG: EC55989_4900 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 539 1 539 539 1004 92.0 0 MRTWLTRKKPETIPSDGKPSTTEGWLHPESAEMLLAETTRQQLIQFIRQSTALPASLFER FWLIPIHRFAELAQLFPASENHHHSHTGGLLDHSLEVACYAARLRQSYLFPPDAAPEDQA AQSERWTTVIIYAALLHDLGKLITDIEVEDVSGKRWFPWHGPLTQSYRFRYLPQRDYLHH PAAVALLLTQLLPPESLDWLAADAAALSTLLHCLNGQYQYAGLAGELVQKADRASVAFNL GGDPVKAIHRPQTSLPQQIIAALRDLLAHEFRLNNPNGGSDGWLTEKALWLVSKNAADAV RGWLLRQGIDAVPQHNVRLFDEMQAHQLLIPSEDKAIWHCRIEASGGWSSELTLLRFSPS LIWEDPQQRPATFSGSVTPIAGIRNETEAVIETNTKVEQPSTLPEQDDTPLSGEAFWQWL VRNVQAQHLEVNEPNARIHTVAGSVFLVTPGIFKLWLSTCGQNVPEEYWREVQKKFQNLN LHRKQKNGLNIWHCAVVGPRRCSRLKGYLLDDPTPLFGDDVPFNNPHLLLNEGSHSNDL >gi|283548477|gb|GG730300.1| GENE 374 414146 - 415057 611 303 aa, chain - ## HITS:1 COG:mlr6154 KEGG:ns NR:ns ## COG: mlr6154 COG4227 # Protein_GI_number: 13475143 # Func_class: L Replication, recombination and repair # Function: Antirestriction protein # Organism: Mesorhizobium loti # 7 297 25 315 320 209 40.0 7e-54 MNRSNDLYQKVTDEIIAALEKGVIPWVRPWREGEPVVPMNALSGRFYHGINIPLLWNSAE QQGYESDRWLTFTQIRNAGGNIRKGEKSTLAVFYLPQQREVVDRNGNTVLDADGNPKLTS YAVVREFRLFNIQQCEGLSEAFSQPVVMVDDPIAAAEQVARQSAVVISHRRQNRAYYSPG RDCIIMPHPEQFTSREDYYGTLLHELTHATGHASRLNRDGITAGKHTFGDPTYSFEELVA EMGAAFLCAHVGIQSKLQHDSYIASWLKVLQQDKKAIFRASGLARNACEYLLERAQQPLA LSA >gi|283548477|gb|GG730300.1| GENE 375 415143 - 415436 256 97 aa, chain - ## HITS:1 COG:no KEGG:EC55989_4902 NR:ns ## KEGG: EC55989_4902 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 97 12 108 108 163 91.0 2e-39 MPTSSITEATSLSLSISSEAWEKVVSFPPDPSQEDDRLENLIVATILTFKSAGPDRKSIN FGLYCFPADGSSNVPLMTPLRLTLEDNHLLVTALHTS >gi|283548477|gb|GG730300.1| GENE 376 416370 - 417011 -111 213 aa, chain + ## HITS:1 COG:jhp0435 KEGG:ns NR:ns ## COG: jhp0435 COG0270 # Protein_GI_number: 15611502 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Helicobacter pylori J99 # 86 199 237 347 351 74 34.0 1e-13 MGLRSDVNIGEVTWPPVSTHFKDKKPQWKNSSEVFERPSSDIIRKIENKIGAESTANLIF YKKRSDTCSDDSSNIHMNHAEYMIDRFSQTPINGSREDIDFRLPCHAAGYGGHKDVYGRI RLAQPGPTITTGCFNPSKGRFLHPWENHGISIRHAARFQTFPDDYIFSGGIISQGKQVGN AVPILMGKVLLNSCVNIIRHQSQEDDIACKQEL >gi|283548477|gb|GG730300.1| GENE 377 417815 - 419959 103 714 aa, chain + ## HITS:1 COG:no KEGG:ETA_09670 NR:ns ## KEGG: ETA_09670 # Name: not_defined # Def: histidine kinase-like protein # Organism: E.tasmaniensis # Pathway: not_defined # 1 713 234 947 948 1042 72.0 0 MAKDNIELADIEQSLVDTLRAFVNPYLCKDDSFSYGIFTIRKNGSYHQILSQTDVFGRHD FNALEHTVVGSIDSKGWFRGRVTAFGEDKGDVIIQPNINVSEYSGVGPFELCFGTFEFNF ENTTHSAREHANLLAKAKKYAGLMVFRDNLRVLPYGRVDNDFFQIEERRSLNAGRYFWSN RRLFGYIGIAQDENRELKDKSGREGFIRNQAARELKTIVADLLTDLADKFFGRGSEERKE LLAQVKKERELRKAAQQQARKSTQKSFSEALKKQKPILDDSLNSIISLKNSLEKSENIDL NKIRKLDEELSILDLVRTEIKTPVKPPKLGIYEEKYRDYRDKYNEFSAYVLQMKLIVNKL DSELNKLEPSQLAKRHLEKNQGMINSKLTKFVTSINEKNNNLLAKWSAEIKDDRSVYYSR CISLVDEIDDNSNIEQVLNNLDSVYIELTDSLAFKYESILKGLDRLYDGINLDSAFSMSE EEKFYFEEKTKSLNALAQLGISVEILSHELEEMDALVTRGLNALPYVAKEHPGYELAYNA HKSLTQQIRFLSPLKISGYQSRQRISGKNIHDHIIKFFGDRFERQRVDLKFGDAFKNITI VDLPSRIYPVFINLINNALYWVNLADKRVIHIDLVDDLVILANSGPAVDEDDIPKLFELF YSKRTNGHGVGLYLCRENLAVAHHQIWYSDVRDGGVYLIRDGANFIIKFNGLEM >gi|283548477|gb|GG730300.1| GENE 378 420555 - 421712 -56 385 aa, chain + ## HITS:1 COG:no KEGG:ETA_09690 NR:ns ## KEGG: ETA_09690 # Name: not_defined # Def: hypothetical protein # Organism: E.tasmaniensis # Pathway: not_defined # 1 382 81 461 463 441 56.0 1e-122 MNRDNTLTVKDDRDFLYRLICEYYVQSANILPNEQLYHHVNGDVNGVKWLQAGNIFIALY HKGQDSYENDAENIWATLNESLCEWRPSYYQLLKSEIQNKIEAEALSFNIHLANDIYGQA AWLNEIIKAEDGVLKDDNIDVIFGNLAEELYIKLRKNDKLRGFINSVFDTYKQDFNAGEE RDSLKYCAREMKLPTNQNITFQDMYHALNMNLSSRNYEEKHISTGTVFWDIDNDNWYLCV SAACDMVPAQGNDPHHERLRPHRLIKALQLFPVRPDKALPCAHHSKYIYAYDNNKRKYFS IFNEDKGLPVIDYMIILNHSQEGNEVNKRNATAVVLRNNDGEIEKVNLNIKMKSQLRSGY AERYQAIASQYGARIGVDYISVALP >gi|283548477|gb|GG730300.1| GENE 379 421772 - 422530 -288 252 aa, chain - ## HITS:1 COG:no KEGG:Tcr_1644 NR:ns ## KEGG: Tcr_1644 # Name: not_defined # Def: hypothetical protein # Organism: T.crunogena # Pathway: not_defined # 1 241 1 242 244 243 48.0 4e-63 MQQLNNYADNRLVSGCVYCGGIPETREHVPSKVFLDAPLPENLPVVGACRKCNNGFSSDE EYVACLLEAAIAGSASPSDIRREKVSGVLERTPKLQKKLESAKYIKDGETYFSVEGERIK RIIIKLAQGHAAYELSLICKNEPSSVWWHPIALMGKELLDDFESDRFAYVLSELGSRNSQ RILVVDTKMVSQENKELHIPIFINPWIDVQEGRYRYFVDDSSDDIVVKFVIGEYLACEVI WSDNTNTSEMLI >gi|283548477|gb|GG730300.1| GENE 380 422702 - 424183 1196 493 aa, chain - ## HITS:1 COG:no KEGG:SARI_03145 NR:ns ## KEGG: SARI_03145 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 493 1 493 493 916 96.0 0 MTTNSYLEYFLTLLGWVVNNGLWNTISATGLFALPLLIKLLALWLQARSQGADEGNKAAL SLIWTEHLMYTSLLVIMFTCVPMLNIDLDTIKYDTTRSKQCGMSVPQPSDTGYQPIINSL GGKTAAVPVWWYFIHVISKGITSATVATLPCQPDLRQIRFEVQHTRIKDPALAQELRDFV EECYAPSRARLKFRAGELDDDTSDDTAWLGSSYFLNTAGYYDTDHALSPHSDWSYSASRD AGLADTGAGGYPTCKQWWADDTVGLKARLLQLPAPDIWTAFKKIGQPQAVYEEAVLRSLV SERKMQVSQDGRIYPGYGGNVDGTLTNAATRFVSTAGNIIGSAVAFPAFDSVRQALPMVQ ALLQMALVICIPLITLCSAWDVKAVMTLTFVQFAMFFLTFWWELARWLDSWLLGVLYSSD THSSWNLAGIQNSQDDVIINLVMGSMFLVLPTFWLGAMTWAGVRVGVAVNGALAGGVKVA QDSGGKAGGIIGR >gi|283548477|gb|GG730300.1| GENE 381 424180 - 424437 217 85 aa, chain - ## HITS:1 COG:no KEGG:CKO_03490 NR:ns ## KEGG: CKO_03490 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 85 1 85 85 125 83.0 6e-28 MKRLMLSSTLLLTCMAMMFYLSSGNALQINRSDLLLWRITLYAAMSGVGWRLYERFPPYR PTILCIALWFIVLIVLNEIVPEVFR >gi|283548477|gb|GG730300.1| GENE 382 424434 - 425801 1269 455 aa, chain - ## HITS:1 COG:no KEGG:SARI_03143 NR:ns ## KEGG: SARI_03143 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 455 1 455 455 803 98.0 0 MRSAWCLLFVAFLAPAADKYQYQQQGAISDWMYYRIGGGAAIPPSATRRNTFPLAAGVSW NSDMMCGNFDIDTTVRNQLNGVTDGFQQLMGEVIESATSAVASLPAMVIQRANPQLYDLL TNGVLQGRLDFDKSLLSCQKMAGKMTDYALGPAWTQSAQAENYQGIAASEKDAVRADQRA AEEAAEKGKRWVGGEHRGGKGQSPIKLVRDTTVAGYNILNNRSATSTSSVSSNDCQGELC QVWSKPDDAAQWLTRVVGEQTINVATDNDQSGDTSQQSGAQSGVGLTPLIQEEQDKIQPL IIDMVNRSQPVNDDTLAQASGGELHLTRGVIEALRDDPDAAVLIQRLSGELALSRVMEQA LMARRTLLAGMREPNVSGEKEAQTALTQTTAQLDQELSQLKLELDMRQALADNAALTILE RQTMRAKTKGQAVGVEDDTDKRVDDLSKPTGGDTQ >gi|283548477|gb|GG730300.1| GENE 383 425804 - 426739 521 311 aa, chain - ## HITS:1 COG:no KEGG:KP1_0595 NR:ns ## KEGG: KP1_0595 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 310 62 371 371 514 79.0 1e-144 MPVRHVVLSSLISLAVPAAQAITTPEIAASALSPECVQYQIVGVCYWLFCSPFGCSVRTS VKIRHFRPDLVVSAYSVTGQNPWTEMSPLSSPLPGIAEAGGDTNPRTVGQHSKVRFKNAD AIGFPAGDALAKFFAQFGYVCAPSSQPFLPYFLSTLDALAWRSGVPEMFYPEALTPGLRE VSKDGDMWGNIYPRAGALSQTHDYKAGAVIAQRAADLVTRSGQPHIYIPLATSSHDGYWP PAPVTEGDSNNHQWQMLVPQKSASCAIFPDGSTTDSYANKLAEDGAYVWTLWRPYKCCPR RGQTFLGSSGG >gi|283548477|gb|GG730300.1| GENE 384 426709 - 426918 96 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|331660870|ref|ZP_08361802.1| ## NR: gi|331660870|ref|ZP_08361802.1| hypothetical protein ECKG_03370 [Escherichia coli TA206] hypothetical protein ECKG_03370 [Escherichia coli TA206] # 1 69 4 72 72 126 95.0 4e-28 MKTGQRGEQAYGTPDETDAVGLSHSMKVFPSKLNIQMGKLTAAGDAAVDNYLKRVVALIC VPISISLNA >gi|283548477|gb|GG730300.1| GENE 385 426858 - 428234 1541 458 aa, chain - ## HITS:1 COG:no KEGG:SARI_03141 NR:ns ## KEGG: SARI_03141 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 458 1 458 458 863 95.0 0 MNTPILPFLPDNADWIYQPDLSDEFNGPDLDPRWCPYYQASWGDLDASRTRYRFITESDG TVSLELYVDNAGQGYWQPWRASNNTYKVAGITGGTRDYMNMWPSGGFPITNHMPYYDAFA TRYGYFEIRTRFLNGSGLAPAFWFLGMQDAVYTENMEVDSPEVFTLENVVKFNLLPRQGE ASQSLVTAYGEGATLPDLDDGYHIYGLEWDPEYLKLYIDGQLVSTIESAIDYRMFPLISL NHHETNNAEVGNIYDNDPPLPNDETFTIDYYRVFKKADTPADPWPNYQNPLLPGYNIAER AFINIYGYDGDNSTSREGKLNDGDHFSIADTYPKGSGTEEENERWYNDQFRYIYIEWHQP VDFDTLVLYATQAQSTAPQNIRIEVSADGYGDWTVVKPDFDLDWQTDEPGVAEGLKITLD TPLQQNQHARIVINTAPESYALSEIEIGTQINATTRFK >gi|283548477|gb|GG730300.1| GENE 386 428250 - 429257 942 335 aa, chain - ## HITS:1 COG:no KEGG:SARI_03140 NR:ns ## KEGG: SARI_03140 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 335 15 349 349 673 99.0 0 MNRNTLLCALPLLASGIGLPVMAADIDTDDIQQKVDTGLDQAPASKPWKVRAGLLIETEN KEGQSFDKDGFFEPTLWMDFSRDRWTFYGSYYQETHGTNYSDGFSRDNWFNQYEFDARYL MVDQKDLALGMTFHFRNYTFIYQDNPEKTQSGGYNSQRWSFQPDWRINFTDKFKSTGWVT VYNWYNNLHENGLANRELKGEGGFEYRFNPTIAVRLNYFIDRGWNTNSDDQTGEFCRSQL RPYIPITFSLFDAGPTTITPYGRWTLDVWSQNASRNQRMHTTETRTGIFIEQKLSPHLSM TLDYAYEVQARHDLSPGDKPVVKFHKTGLGFIYSF >gi|283548477|gb|GG730300.1| GENE 387 429322 - 432471 3177 1049 aa, chain - ## HITS:1 COG:no KEGG:SARI_03139 NR:ns ## KEGG: SARI_03139 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 36 1049 1 1014 1014 1969 95.0 0 MKKTTGWLSLLALSISLVCHQAAASSRLSASAIRVMDAQGNNVSQPLLDNNPATQWQSKL DYNRWLEMDLKGTYQLSELQLTTPLNTLTRFDVYSSDDGVTYRKIASAKTGKPNDRLPLN VRASRLRINITDYSAGTKGVVNDISLMGDKISNTAPTPPAIQVADYATTEWAKRHQRRQN TAYRQQEVISEAQVLVERVLGAQYQNRFTFAVTPSTTGKDSFTVKEADGKISISGPNGIS LASGLNWYLKNYLHVNYDPLNASNLAIPTDWPMPQGVTEKATPYQYKYALNFCTPSYTMA FWRWHDYEQFLDWAAMNGVNLMLDVVGQEEVQRRMLHQFGYSDNDVRQYLPGPAYFGWFY MANMQSFGGPLPQSWFAQRTELARKIHDRMEVYGITPVFPGFAGQVPDTFAAKNPQAQVI DQGDWVGFVRPPMLRTYVKQGADYFSKVADVYYQTLKTTFGDISHYYAVDPFHEGGNRAD LDMVKVAQTVQNKMLEHDKDAVWIIQNWQENPTDAFLNGLKKDHALILDLYADNKPNHAI RHEFSNTPWIWNMLHAFGGRMGFSGMPEVLAQEIPQSLAESKYMKGVGVTAESLGTNPML YEMLYDMAWEKSPISSTAYIHSWLTSRYGAQSPEIEQAWDIMVKTAYHRRKDRQRAEDSI IDAKPGFGVTRACTYYTALIDYDKAEFEKILPLYLSVYDRFKDNPAYQHDLVDITRQVLA NASYEYYRAFEDAWMAKDYSAFNQLSGKFLRLIKLQDQVLGTRPEFMLGTWLNSARTMLD GMDDWTRDQFEFNARAMVTTWGIEQAADAGLRDYSNRQWQGLTGDFYYQRWATWIQALKN AAATGQKQDAIKVNWFPLEYRWVNQTGNGYPTQPSGRNIRQLAQQALTEFSVTSEDLRPY RESKDKRNLALNKPVFTHGDIINAEFSTEHVVDGQSSTLWGNKTWPADLIIDLQGAQKVD GIELEFEQTAEDMRNPVVSGWTVEIQDAQGNWHTIQDKSKDFSQKQVVNAVPYKGEAQKV RVTLTGADFKLRPDLKPQLAEVRVLAATQ >gi|283548477|gb|GG730300.1| GENE 388 432746 - 433990 1176 414 aa, chain + ## HITS:1 COG:lacY KEGG:ns NR:ns ## COG: lacY COG0477 # Protein_GI_number: 16128328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 29 399 27 402 417 345 49.0 1e-94 MAIQRDTKWNVILWGFFFLFYYYNWSSCFLFLPMWLTRMVGLDKTHIGMVFSSFAVAAIC LQPLLGWVTDKLGPKKHLLWLIVILMVLFAPFFIYVYTPLLQSHFAIGLVVGGLYLGFIF HAGYGAVEAFVEKVSRNRGFEYGRPRLFGCFGSAACATISGILYGFDPTWIYWIGSALAL LLVVILLVARSEPLPGIEAEQVRQQKVSVWELFKLRRFWYFTLYVLGVACIYDVFDQQFI NFFTRFFDHQEQAARAFGYITTAGNLGDAAVMFFIPLLINKYLGSKNALLITGTIMTIRI VGSSFATGPIEVLFLRMLHNFEVPFLLIGIFKYIADVFDTRLSGTIYLVGVMFIKQSAAI VLSTVAGRLYDTIGFHSTYLILGSITAVFTLLSAFLLTATPRQKMADAYAPATL >gi|283548477|gb|GG730300.1| GENE 389 434004 - 435296 1499 430 aa, chain + ## HITS:1 COG:PM1682 KEGG:ns NR:ns ## COG: PM1682 COG3119 # Protein_GI_number: 15603547 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Pasteurella multocida # 2 428 3 451 453 419 46.0 1e-117 MQPNILVFFTDQQRWDTVGCYNPAVSTTPVLDQLAREGVKFENAFTVQPVCGPARSCLQT GRYPTQNGCYRNNIAMRQDEVTLAKLFNQAGYDTAYIGKWHLADLDEKPVPEELRGGWQY WLAADALEHTSHPYGGHFFDKDNQPVHFDGYRVDDQTTFALDYLKNRQPDNPFLLFLSYL EPHFQNDMARFVAPDGYAERFQTAAVPPDLINRPGDWPQNLPDYYGMCQNLDENLGRIVD YLKASGEYDNTIILFFSDHGCHFRTRNDEYKRSCHESSIRIPCVARGGPFSGGRTVEHLV TLLDIPTTMLSAAGITVPDAMVGRDLQTALNAEHWDEEVLIQISESEVGRALRTTRWKYE IVAPGSDPWNESAAKIYVESQLYDLLNDPWERQNLIASPEHVRIRDKLRQDIGRKMTAIG EDLPVIVPVE >gi|283548477|gb|GG730300.1| GENE 390 435300 - 436100 443 266 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145640905|ref|ZP_01796487.1| 50S ribosomal protein L17 [Haemophilus influenzae R3021] # 18 261 1 243 257 175 38 4e-42 MTAWMIVALCGCGMATSLLSALFGVGGSILLVPVLHLLFPQCAVQVLAATSLTVVMLSAL INVCAFWRQGIRLNSRLLVLWSLGMATGMQAGVYASFLLSDKMLLILFALVLVGLALRCG FSHQTTSENVQPDNRTRSAGMLLCTAGGAVAGLTGLGGGSVLAPLMSQLSGIPRQHIAVY CNWMMLFGSAGTVVSYLYRTAPDTGALPPAMQFGYVNMAIVAVIFLCTLAFQPISMRLRT LLPECWLQRVFSGVLLMIAMLILVTL >gi|283548477|gb|GG730300.1| GENE 391 436118 - 437263 778 381 aa, chain + ## HITS:1 COG:STM1287 KEGG:ns NR:ns ## COG: STM1287 COG0641 # Protein_GI_number: 16764638 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Salmonella typhimurium LT2 # 1 381 8 398 398 422 51.0 1e-118 MAKPAGWRCNLACDYCFYLAKGQGVLRDACGQRHMSDKVLETYIRQYITASPGPEVNFTW QGGEPTLAGLDFYRRAVALQQRYAGDKRITNSFQTNGVLINDEWAAFLAQHRFLVGISLD GPAHLHNHYRKTGSGKPVFEQVTAALDCLKRHGVDVNILTVVNNVTAQAPLKIYRFLTRE VGAEFLQFIPVVKYDAQRGLLPWSVTGEDYGRFMIAIFDEWVRHDVGRVFVQLFDNTLAA WLGESPALCVMQPTCGRGLVVEQNGDIYSCDHYVDAEHRLGNLLQQPLEKLVVGKAQRRF GQQKAQLPDDCHRCPWRFACQGGCPKHRLHDRSNHLCAGYRMMFSHMDPYMAYMAQQIRL QQSPAGVMVVADDLCRNDLIQ >gi|283548477|gb|GG730300.1| GENE 392 437342 - 438166 414 274 aa, chain + ## HITS:1 COG:RSc2614 KEGG:ns NR:ns ## COG: RSc2614 COG4271 # Protein_GI_number: 17547333 # Func_class: K Transcription # Function: Predicted nucleotide-binding protein containing TIR -like domain # Organism: Ralstonia solanacearum # 130 270 84 230 233 92 42.0 6e-19 MNGAMIMSDLQVIEELKKLKGRLRSEVAPAYDSQGREFGHNRFSALKNKTINILNELLPG EAQRFEKAMIIGAWAMRWDESESQYFWKNEGRRYEAYIDSLLIDLQNGEYSLPNETSDNQ DKGNSLLANNKVFIIHGHDGEAKEKTARFIEKLGLEAIILSEQANQGKTIIEKLEHYTDV GFAIVLYTGDDAGNTEAEAGIGNLNARARQNVVFEHGLLMGRLGRHKVIPLVSGTLELPS DIQGVVYINDRNWQLEVAREIKAAGYDIDMNKVL >gi|283548477|gb|GG730300.1| GENE 393 438212 - 438961 258 249 aa, chain - ## HITS:1 COG:PM0599 KEGG:ns NR:ns ## COG: PM0599 COG0664 # Protein_GI_number: 15602464 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Pasteurella multocida # 60 223 24 189 197 153 45.0 3e-37 MIISDVSFHTISTPAQIQQAAIPPPAEMPFLTAPVRNHAAFHYAHFSRHALLRPITRETG GKIYRQEEPICGFWYLNHGVVGLHHTLENGKEMLVRACQQGDWFGYLGLFGSDFYHCHAC VLQTASLFHVIPHSNSDFLRHHPQFAQFLLNQVVASLSDSEHRMTWIARYRTRHRVLSSL WYLTSYFPGYDWTWREVAEFAGCETETALRFSKELRQAGILDDSQRRLHIRDLERLTAIL NNKIARNDI >gi|283548477|gb|GG730300.1| GENE 394 438958 - 439218 259 86 aa, chain - ## HITS:1 COG:STM2749 KEGG:ns NR:ns ## COG: STM2749 COG3423 # Protein_GI_number: 16766061 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 4 80 7 83 94 113 72.0 9e-26 MIKQDWHPADIIAALHKRGTSMAAVSREAGLASSTLANALSRPWPKGEWLIARALNLHPA EIWPGRYEEEGELRQPKNPLPVRCRL >gi|283548477|gb|GG730300.1| GENE 395 439322 - 439558 215 78 aa, chain + ## HITS:1 COG:msr0960 KEGG:ns NR:ns ## COG: msr0960 COG1396 # Protein_GI_number: 13471079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 8 72 12 76 83 60 43.0 9e-10 MSSIYSEQYQQVIRLLRSARQDRGLTQAQLAKALGRPQSFVAKVENGERRLDIIEFAHIA HLLSLDPAAVLKTVLPQK >gi|283548477|gb|GG730300.1| GENE 396 439666 - 439890 99 74 aa, chain + ## HITS:1 COG:msr0960 KEGG:ns NR:ns ## COG: msr0960 COG1396 # Protein_GI_number: 13471079 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Mesorhizobium loti # 6 74 10 78 83 62 42.0 3e-10 MTSVYSIEYQMVIKALREARVAGHITQDELGKALGRPQSFIAKVENGERRLDIVEFVHLC RLVGIDPVSIINKL >gi|283548477|gb|GG730300.1| GENE 397 440023 - 441312 518 429 aa, chain + ## HITS:1 COG:no KEGG:ECA1624 NR:ns ## KEGG: ECA1624 # Name: not_defined # Def: hypothetical protein # Organism: E.carotovora # Pathway: not_defined # 1 429 1 429 431 605 72.0 1e-171 MSESLQSNATQTLPDDREELYHLVWREPAERIAVLYGINTEYLGKRCSELRIPRPLAGYW KALAKGAAPAIPPLSVLEKRKGKKIPEKARVAVPSSAPSSLQPIKPKLRKQPSITGNGYG LINDLKNYLPGSTVTRDGYYKPTKKKLLDLNVSDTGFESAIDFLSRFFDALGKQGYRVTL DVPGERLSRAEIDIKEEPKGEGYRWDSLWRPYTPSVICVDDMHFAFNLAEMTEYVPAKEV KGRYVRDEQMGRWMRGKNTGPFFHVSKHTLPTGRFLLQLYSPYESADWRVQFRQTKQCGL ISQIPKMISALQEVIPLISKQLEDARIKAEEWRIQWERDQAIYLEKERIRREEEAHKASI TELNAIMAQWAEDKRTEQFFREAELDAAGLDEQQRVRVMERLQLAQQFLSEDTAVERLLK WKTPQDRLK >gi|283548477|gb|GG730300.1| GENE 398 441368 - 442006 -172 212 aa, chain - ## HITS:1 COG:no KEGG:Sbal195_3344 NR:ns ## KEGG: Sbal195_3344 # Name: not_defined # Def: hypothetical protein # Organism: S.baltica_OS195 # Pathway: not_defined # 4 209 170 378 383 204 47.0 3e-51 MGNPFILAIAPFDNLLSSGQNNRAINRVLFGIDTLPDGTVKKIPSIITKAGNIIDLGIFT NDSYKEISAIIFSTVGMFSKAIIEAKIPCKVRATKYRQFTMKEFNKLSDMGIEKIGKTLK EFDNQDMLLTFRHPSGNHIVGCDMYFCDSTQHKEKHIDGLHIYHNPYASIPLNRKIFNAK ELTYNGYNISNGNLIVEHNDGSLVSRNTYVTF >gi|283548477|gb|GG730300.1| GENE 399 442568 - 445210 2506 880 aa, chain - ## HITS:1 COG:no KEGG:SARI_03123 NR:ns ## KEGG: SARI_03123 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 878 1 878 888 1688 96.0 0 MMRSGTLTEQTVDSLYQKGTSFVDFLPWVEYQPKSKTLLLDDGRSVGAVYDITPFGTEGR SPARLEELRDILKDAIQDSFTEYDRQPWVVQFYCQDEDDTASWLAALHDYAVPEAKNSDF THAWLNEMERHLHAVSRPEGYFLDDAVSHTRWRAQQRHTRMVVYRWLPNKSRDPLEDSPE EALNTVCERMVSALAGAGIHVHRLECEAIRHWLLRWFNPAPQMADSPRQFWQQMAQQDDT PELHDFAESLLCSEPRSQAAQGAWLFDQRPHKVIVLDRLRKPPTVGHMTGESARGDGINA LFDLLPEGVIMALTIVVWPQDRLEEHLSRLSDRAIGENVESEYTKKDCQEVRHWLKDGHK LYRSALAFYLSAPDNGELTRRVRNLNSLLLNAGMVPVQENDELAPLSSWLRWLPMCFDPA RDKRQLYTRFSFVQHLANLLPLFGRESGTGHPGVSYFNRGGGMLCWDPLNREDRAQNGHL LLLGPTGAGKSATLNAKIAQLMALHRPRLFIVEAGNSFGLMADYAREHGLTVNKISLKPG SGITLPLFADAWKLAESDVILPEPDDDDPEETDNEQRDLLGEMEITARLMITGGELKEDA RLTRSDRALIREAILLAAQLTAREQRQTLTQDIRDALFTLAQDAALPESRRNRLWEMGEA MNMFCSGFEGELFNREGEAWPEADITLVDLAMFAREGYEAQLAIAYISLINHINNLGERD QHLARPIVNITDEAHIITVNPLLARFLTKGSKMWRKLGIWLWLATQNLSDFPDDAKKLLN MIEWWELLVMPPEEVEQVSRFKSLTPEQRQLLLSPTKAPGKYTEGVVLSPRVEALFRVVS PALWLALGMTEKHEKAERMRIMRKFGCSELEAAMRMAQNL >gi|283548477|gb|GG730300.1| GENE 400 445210 - 445599 413 129 aa, chain - ## HITS:1 COG:no KEGG:SARI_03122 NR:ns ## KEGG: SARI_03122 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 14 129 14 129 129 219 95.0 2e-56 MRILILLLSLLLTACSTDQKTLLPVDENTTMLNIWGRQNNDAQALYDARSILRRPLDDAT LNAQQQQATRSDGNSTKALFQRLPNPDLEMYIFPHLAGSEGVPVPGYTTVFPFYNRVQYA LPGERTDPL >gi|283548477|gb|GG730300.1| GENE 401 445599 - 446936 1176 445 aa, chain - ## HITS:1 COG:no KEGG:SARI_03121 NR:ns ## KEGG: SARI_03121 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 445 1 445 445 769 94.0 0 MKLQANILLRVLTPLILLAGCVLLFHACQDRKATPSKSSAPATSLSHDELKALGIEGDTP SDTVATLVGQMKLWRKELETVKASNAALVQENQRLREREQNTDSRINEAINRQQTSVSQQ QNELLSSLQTKIQQLKGNRTTDDSLAGLGIDEPETTSGEPLRWIAPADALPTDKNGRPLQ PGLAFPSTMQNTAPQPETPPPAAVKPVYTLPQNSTLIGSVAMTALLGRIPLNGSVTDPYP FKVLIGRDNLTANGIELPDIESAVISGNATGDWTLSCVRGSLTSITFVFRDGTVRTLPSE GDKTGSGTEGNIGWLSDPHGLPCIPGERKSNATEYIGSQFLLAGSSAAAQTLANNQTTST VEDGSVTTALTGDSGQYVLGQALGGGLKESADWFKQRYGQMFDAIYVPPGQAVAIHITRQ LAIDYEPDGRRVNYRTAGDRTGDLD >gi|283548477|gb|GG730300.1| GENE 402 446933 - 447721 626 262 aa, chain - ## HITS:1 COG:no KEGG:ROD_33501 NR:ns ## KEGG: ROD_33501 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 262 1 262 262 427 93.0 1e-118 MNARPLLILLVALPLHAVELVKWERIPLPVALNIGQERIVFVDRNVRVGYPAALEGKLRI QSGNGTLYLLASQPFAATRLQIQDTENGELILLDVSASKGGHILEPMRIVREEKKATDAK PDTIPDPLPSTPLPVALTRYAAQMLYAPLRTVEPLPGVQPEGVRLAKTITTLLPALPINA IPIGGWRLDPYHLAAIRLQNKSATRLELDPRQLQGRFYAASFQHRWLGPAGSAEDTTVLY LITRNQRPEQAILPEPAPEKKK >gi|283548477|gb|GG730300.1| GENE 403 447718 - 448344 554 208 aa, chain - ## HITS:1 COG:no KEGG:SARI_03119 NR:ns ## KEGG: SARI_03119 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 208 1 208 208 406 96.0 1e-112 MSAFKHALAARDAHIRTLHIALAALFLLASGMGFGWYSAPHQLTVYLPPDLRAASQRPWW EVPPSTVYAFAFSVFQQINRWPTNGEADYPRNLSALRAYLTPGCYSQIDREFRQRLQNGE LRDRVRGVYEIPGRGFSDKRVQILDRDNWIVTLDLTVDEYFHSETVKRAMVRYPIKVLRY NIDQQKNPWGLALDCFSSPPQKLEAAKP >gi|283548477|gb|GG730300.1| GENE 404 448341 - 448694 253 117 aa, chain - ## HITS:1 COG:no KEGG:ROD_33521 NR:ns ## KEGG: ROD_33521 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 117 1 117 117 192 94.0 3e-48 MSTISFLPERLNREPAVFRCLTVSELLIALLVGLTTGAITGTIPAILWRNWSLIPGSALP GATLAILCGGRWLARLKRGRPESWLYRALELKLARFGIGTQRFVLHDGVWAIRRSRR >gi|283548477|gb|GG730300.1| GENE 405 448698 - 449024 453 108 aa, chain - ## HITS:1 COG:no KEGG:SARI_03117 NR:ns ## KEGG: SARI_03117 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 108 1 108 108 204 96.0 1e-51 MKKRIFGWLLWFPTLPAYADLPEMEDPSRGQGNGIMETLQNYGYDIVILMTLGICAVGFL VVANNCIATYSEIQGGRKQWKDLGAMAGVGAVLLVITIWLLNQASDIL >gi|283548477|gb|GG730300.1| GENE 406 449043 - 449276 269 77 aa, chain - ## HITS:1 COG:no KEGG:SARI_03116 NR:ns ## KEGG: SARI_03116 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 77 1 77 77 110 96.0 2e-23 MTPEQISAFQAASLVKPDALSLVMLGLFSAFLLLWVVWVLNDAYRGVATARVSWRALGSI GGRTILLLLVSFWLVLS >gi|283548477|gb|GG730300.1| GENE 407 449273 - 449584 266 103 aa, chain - ## HITS:1 COG:no KEGG:SARI_03115 NR:ns ## KEGG: SARI_03115 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 8 103 28 123 123 148 85.0 8e-35 MRTITSILIALFFSSPAFAAPLTEREELTLSLNQLTQIEASLNRAQQSARTGINERYYFD YPRIHGDITTLRSGIENYLTPARAQPRDTATLVGQYGEEKTTP >gi|283548477|gb|GG730300.1| GENE 408 451057 - 452754 333 565 aa, chain + ## HITS:1 COG:no KEGG:Saut_0059 NR:ns ## KEGG: Saut_0059 # Name: not_defined # Def: hypothetical protein # Organism: S.autotrophica # Pathway: not_defined # 67 472 406 800 897 79 23.0 5e-13 MFFDNVLSVNNKYTNAFSALLEKAFITKVIYDVDSNSYSLRKSSYLFEGDLYKKLMFEYT QDSVDFLFINKDYSRALECLISEVKYFLKEKNYIRATIYMANFDIIYGIIQRSISSKGDE FKEPPVKIIEKFSPFDYKNKVLDFPREMQKDLRELIDILEFNEIYKAYYKFHRETQKNLG YAKLRKDGGIALSGDEFSIRAKLYPYVYFILGNDIFIEEFVEVKQFFESNIFGSLEHYLI EGKFHVNIMDLFILIKYCEMKKVKEFASRLLEIQKNNQVAHFSAKEIVRIKKYLLLALKN IINLFNMQSESFLHMTSIDRWLNNLLILFGFAKWNDNEMKEIISTIISLLEHRTKNMVIY DNAQYFLTVNALLYQKSHPDILKLLDVVLEKISNNQLNGFDQQIMYGDTLRNIYALSENH NHIYNNTKLIRSALLKIEARSDEWKKFITDNLLLDLKRIGSEEIKSIIDDFIAKNILVLP CSTPKDYMERLTLMANGYPMPEGFVEELKSFVDNNIPNNLSNLEFIKARVDAGFPELLRF LIKEKNYAGLQPILDAFENRTKLIE >gi|283548477|gb|GG730300.1| GENE 409 452865 - 453545 269 226 aa, chain - ## HITS:1 COG:no KEGG:SARI_03111 NR:ns ## KEGG: SARI_03111 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 226 1 226 226 357 83.0 3e-97 MPDHAPQPVRRSGLLGWIALLPGVLVGFCLGAWMLAIALEWLGDAFFWRNTCASHSEQVL QATWLWWRGSASAPVWLVEDLALVSGTLQQGIAALVHALNGQSGLFWTETATTVIRCALL SAGNVTLTFLLRLAILLQALPLFALTIIVGLIDGLVRRDLRRFGAGHESGFVYHQTRRMI TSSVLATGLMWLTLPLCLEPKQMFVPGSIAIGFVISLTISSFKKYI >gi|283548477|gb|GG730300.1| GENE 410 453545 - 453811 117 88 aa, chain - ## HITS:1 COG:no KEGG:SARI_03110 NR:ns ## KEGG: SARI_03110 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 15 88 1 74 74 132 95.0 5e-30 MTPRTHRHLVSVEVIWPAQTLPLPLQQAVDALTQGETPDQIIARMNLQGFQAWREATSPQ DEHDIFQVRLDEAHEARFLCRYVTLPLH >gi|283548477|gb|GG730300.1| GENE 411 453774 - 455807 1762 677 aa, chain - ## HITS:1 COG:no KEGG:SARI_03109 NR:ns ## KEGG: SARI_03109 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 677 1 677 677 1270 95.0 0 MRLDFILRPAVELYSASAALLAALWCVTAPQTLLLTPYSGWLLALPLLALSVLRLKQGLR ILRFRRRVRHLPLWTLSASRIPLLPSALFLGRGFRWLPRHTQRLYLCRLPQCEYWLRTDR PSASGGDPLLHGVELHEGHITLPLRDRPGHTLVLGTTRVGKTRLAELLIAQDIRRGDTVI VFDPKGDADLLRRVWAEAHRAGRENVFWLFHLGWPEISARYNAVGRFGRISEVASRIAGQ LSTEGNSAAFREFAWRFVNIITRALVALGQRPDYARIARHVINIDELFIDYARVFLPGHD RQAWDNVVRIAGGITEKNTPRNLQGRDSYVVALEQYLSTTRLHDPILDGLRSAVRYDKTY FDKIVASLLPLLEKLTTGKIAQLLAPDYGDLNDPRPVFDWQQAIRQRAIVYVGLDALSDA EIAAAVGNSMFADLVSVAGHIYKHGVMDGLPQVEEKAVINLHCDEFSELMGDEFIPLINK GGGAGVQVTAYTQTLSDIEARIGDRAKAGQVVGNFNSLIMMRVRETATAELLTRQLPQVD VLSNSISSGVTDSADAQGNIGFSSNTQDRVSSVQVPLLEPAALVQLPKGQAFALQEGGQL WKLRIPLPDAAHDPLMPENIAQITHYMEKQYDSAPVWWNRPEAVVTAKNDPILWLNDSET TEKLTDDTPDTSPSRKR >gi|283548477|gb|GG730300.1| GENE 412 455804 - 456211 403 135 aa, chain - ## HITS:1 COG:no KEGG:SARI_03108 NR:ns ## KEGG: SARI_03108 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 135 1 135 135 198 89.0 8e-50 MKHLTPAMLLVTATAIAGPAVPMQALDEARLLPVITHNLYPGQQPRLALNLPGMAPLFLI GDDPLSTEWLRQHQDALKTLHATGLVVNVTTLARLNTLRTIAPALTLLPVSADDMAKHLP ISAYPVLLTDKGLEQ >gi|283548477|gb|GG730300.1| GENE 413 456208 - 456741 317 177 aa, chain - ## HITS:1 COG:RP457 KEGG:ns NR:ns ## COG: RP457 COG0741 # Protein_GI_number: 15604321 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Rickettsia prowazekii # 24 172 92 242 290 74 34.0 1e-13 MASRLCTLTVGLLISTHACAVPPLYAQIARQQQVPAELLYAVARAESGTRLAQGLHPWPW TLNIAGIGYRYPNRSSACRALLTFARTRSLKRIDAGLGQINLGWNGQWFPSLCASFDPAD NLTITALLLRQHYNASPGSWLDAAARYHHPAGGKPAAIYRQKISQQIRLLSASRTSP >gi|283548477|gb|GG730300.1| GENE 414 456717 - 457367 581 216 aa, chain - ## HITS:1 COG:no KEGG:ROD_33631 NR:ns ## KEGG: ROD_33631 # Name: traG # Def: putative conjugative transfer system protein TraG # Organism: C.rodentium # Pathway: not_defined # 1 216 1 216 216 326 95.0 3e-88 MRRYLLLCLLLLPLFASPQQTHIEEQAITHTQAQQWGLTDSEWQRYQQLHQGERGIWSPR LDPLTTLGVEANNDAERQRFAELLARKEHQRVEKELAFQRAYDQAWKRLYPTLTPIRSVV QPRLALFVSEKCPACETLAQKLINDDRPLDIWLVNSRNDDASLQLWAQRQHIDMRKVERG QITLNHDKGRWQRLGGGKLPLLLEQQGEQWRPVSAP >gi|283548477|gb|GG730300.1| GENE 415 457374 - 457982 367 202 aa, chain - ## HITS:1 COG:no KEGG:ROD_33641 NR:ns ## KEGG: ROD_33641 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 202 1 202 202 296 84.0 4e-79 MLKRLAYLITGSALLLLAAAVFWCVNRLNALTLAQQQTQRQITQWREPPQPDSDYRELEV AVKDITGRTEALAKQLNDAARDQAEQLHPINEQLRALEGKIQTLNTSYQHLQQQTATRSR AKAKRPVPSPLWAAKAPFSLIGSEFRAGRQFAVIAPSGYRSLSQLQLVAPGDSVQGWQLL QLDGSHATFRKGGQRLTLNAGG >gi|283548477|gb|GG730300.1| GENE 416 457975 - 458439 324 154 aa, chain - ## HITS:1 COG:no KEGG:SARI_03103 NR:ns ## KEGG: SARI_03103 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: Two-component system [PATH:ses02020] # 1 154 1 154 154 275 92.0 4e-73 MARITGWIITLLMLGGCTAPRQPPAPAPKQPTPPAPEVVRYDRYLLINTRPDEAQRNPLH QIVNINLPLKLKLTVGDAFTWLLKQSGYSLCADDHPTQFLAGKPLPLSQYQLGPMRLEEA LKTLAGPGWLMQTDVLNREVCFHLNTPGTGDHHA >gi|283548477|gb|GG730300.1| GENE 417 458560 - 458976 474 138 aa, chain - ## HITS:1 COG:no KEGG:SARI_03102 NR:ns ## KEGG: SARI_03102 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 138 18 155 155 272 97.0 4e-72 MSEKTYFNLYTSGLGYVNRVRTVTPKRGEPFLCCDIAALSGAADDVDYVRFDCKVTGSEA RKLIARCEQAVNEKRKVLIHFRLGDLYVDMFTYSKGERKGETGVSLKARLLYIGLVKIDG EVVWQAGNQEAESEADAA >gi|283548477|gb|GG730300.1| GENE 418 459543 - 460034 299 163 aa, chain - ## HITS:1 COG:no KEGG:ROD_33681 NR:ns ## KEGG: ROD_33681 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 163 1 163 163 292 96.0 4e-78 MNNPITGYQSLADEDYKMLAYVSSLKGLLKPFKSKGELELLESNARSVREMMEPLMQRLI QSARRYPVRQLPLIFTIGPAPSGANFLRWRNQQNNKSGTPAFCNLICDPKIPQRARDALL EIERDRIVFNMQMSVLTFIIRQARECQEKMNQAEMLYQGRQNS >gi|283548477|gb|GG730300.1| GENE 419 460027 - 460725 572 232 aa, chain - ## HITS:1 COG:no KEGG:SARI_03100 NR:ns ## KEGG: SARI_03100 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 232 1 232 232 445 94.0 1e-124 MSDHTFNMGPLRSAIHIQLHTHNATRLWAGRRATENGPAPIIGMPRFIEILNQMRIAAEH NDPYADLWMLRMEEKLVQSRKLMQVMLDQAKAMFSELPEGIDIETCFNIQPARFPLFINA PLAYQGVYLLTDFDQLARQLLLASHIAVISRREMHNRLNNGATVIRSAFGLVQKYHGSGL TRQDFIDNTPQARAAIERLGPLPEAILSGKLRSSFSSPLPGKAENPGAADDE >gi|283548477|gb|GG730300.1| GENE 420 461038 - 462075 128 345 aa, chain + ## HITS:1 COG:no KEGG:PBPRA1504 NR:ns ## KEGG: PBPRA1504 # Name: not_defined # Def: hypothetical protein # Organism: P.profundum # Pathway: not_defined # 108 343 86 331 334 91 30.0 4e-17 MRKNPTNAFRESYLEAQKYKKEKNRKLGVKVFHALLKSFVFFAMVIYLTQSLVKIGTPIV LTEFLSENKTPFIILPIILVFFAGVIGVISSRKIKAIDYEPDSYSSLKIRISALQKAIDA CREQQGRLHEDVTNYLDGDSRNELYETIYSSLKNEASGSLLCELEEKVKSNNTLIDVKDY FLDMQARLNQRASSLNTVSFINLFIGISIATIGISILLYFVFNTDYVNTDKTVLLIEMMS KLGVSFGIELLSFFFLNLYRKNLQEIKYIQNELTNIEAKKISLTMAHDLPTDLKFKIIKS ISMTERNFILEKGQTTSDLETLKYEKMDIAALLKASPELIKALKH >gi|283548477|gb|GG730300.1| GENE 421 462439 - 463032 -8 197 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834955|ref|ZP_06354696.1| ## NR: gi|283834955|ref|ZP_06354696.1| hypothetical protein CIT292_09216 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_09216 [Citrobacter youngae ATCC 29220] # 1 197 1 197 197 349 100.0 8e-95 MSFLGSFGKALIILLEAFLGKRKGQEEAHNNFLDEYAKENCNHRLVEYWFCQFTGWRYAK YRDICFIMASSDPSKMLYMAKGINYIARTVEFIDNGECKLSDRYNETKKYTFLFMFISFL IIFFILIACMISSVMSLVTHHHDVTLMAINISSIIACAIFITCFAFFIHAITMEFFAFEK AEHFVKSYNAERTPSGH >gi|283548477|gb|GG730300.1| GENE 422 463140 - 465452 1691 770 aa, chain - ## HITS:1 COG:yejO KEGG:ns NR:ns ## COG: yejO COG3468 # Protein_GI_number: 16130127 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 43 770 36 836 836 288 31.0 4e-77 MKLVLYLITLTLPFLSLSAEADYHTQINAGNTVSGDVVDGSKGNQHVYGTLTDSTITGPY AYSYVGDGGQTNHITVTDHGELFLEPGGSAYDTQITANGDLQVNGYAENTYVDSGGQVYV NAGNNGVKDPDQGGQIVNTTVGAGGLIVNRYGIDTNTVIEAGGELDTGWNYPYETRNTAF SRDAVIQSGGIQQVSNGGTSEGSKVNDGGTLIVTGTWHYNVVTDSQPSAWYRGTADDTLV YGVMQNQGGLDENTTVQSGGQYTLSGYGLSHQLTIAQGGSAQINDGALDSFWLYGLMNVS SQATLTGTGSVGSSGQLILHEGAKTSGLTLALDGVLSLQNGSDAGPHNYQIAGLEMNGGT VLFDSTSFATLSMETLSGNGNFWMNTNIAAQQGDMINVSGEANGDFGIWINDTGESPAAP QSLQVVQTGGGDAQFTLLNPNQQVDIGTWEYGLTPDDQGNWSLTPQATPTPSTKAVLAMA NVTPTIFQAEASALQTRLDVTRSRPHQGELWVQALSNRFDVNRTGNAAYRQRLGGLMMGY DRSLPRQTGLLTLGIAGGYSRSDLDLANNSDGSVDSYSAALYASYYDQSRFWLDGMLKGN LFNQHLNARMSSGGHADGSYTIPGLGGSLIAGYDARFARTTLSPFVGFTGFISQSNDYRL SNGMQAHPGTAKSALGQVGFRLRQNITTRSGMQFIPWLKVSLEQEFVHNNPVTVNDDNFN NDIAGTRGSYQAGISTALTQQMHIYASINYEKGNGMESPWTGTIGFNYSF >gi|283548477|gb|GG730300.1| GENE 423 465731 - 466000 169 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834957|ref|ZP_06354698.1| ## NR: gi|283834957|ref|ZP_06354698.1| retron-type reverse transcriptase [Citrobacter youngae ATCC 29220] retron-type reverse transcriptase [Citrobacter youngae ATCC 29220] # 3 89 281 367 367 152 100.0 1e-35 MTALLRQGKSPIYIMENVFNLNRKSFKPKYTNNYTFYNRYATDQLQNKIKGYRSYLVSII KFNEKYKSIDEKFLKSAKKLVKELEDSIP >gi|283548477|gb|GG730300.1| GENE 424 467007 - 467822 -173 271 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283834958|ref|ZP_06354699.1| ## NR: gi|283834958|ref|ZP_06354699.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 271 436 706 706 502 100.0 1e-140 MFLFDADKAISINGGVGSFTINYKKNGEYFSFEKTILEEELKKHKLGFSKIHRELMNNTS YLIRCINKKLDVNLTTQNFSFDSEFEDIFNAIKKRLLLKNIYINRTTIEGCLIQNDSLIL FYKWAAKKYDFDISIIDKLKIKTRKYLTPELLADYFRVIFNGKTKTLIDYKHFNFNAYKQ AIQKCQPLNDRLKKTSTRAKVLMNFIEEHSIANKDLDKTDGWTTNFINYAVEHIANQSKA ENKSFGSVFKVYFPELYDIIRRLQPDSRGEI >gi|283548477|gb|GG730300.1| GENE 425 469518 - 469673 143 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086039|ref|ZP_06571311.1| ## NR: gi|291086039|ref|ZP_06571311.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 51 1 51 51 85 100.0 1e-15 MKLGPYMLPLITLSTRANYHNRISTGNTVSDNVVEGSKGHGALTDSTLIGS >gi|283548477|gb|GG730300.1| GENE 426 469612 - 469785 58 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMYPQHSTDTSPAQIQNDLFAPPGIPQASAQSLQEAPNETRPLHAAAYHVIYKSELP >gi|283548477|gb|GG730300.1| GENE 427 470211 - 470516 142 101 aa, chain + ## HITS:1 COG:no KEGG:SeAg_B4813 NR:ns ## KEGG: SeAg_B4813 # Name: not_defined # Def: putative transcriptional regulator HipB # Organism: S.enterica_Agona # Pathway: not_defined # 1 101 1 101 101 159 96.0 3e-38 MNTVYPLKTLNQIRPLLIGFRKANGLTQKEVSERLGVTQQTYARLEANPASASMERLFRV FTVLGVEMVLSSGPQILSSMSSSTMEGADKQIDSPARREKW >gi|283548477|gb|GG730300.1| GENE 428 470764 - 471849 270 361 aa, chain + ## HITS:1 COG:RSc1446 KEGG:ns NR:ns ## COG: RSc1446 COG3550 # Protein_GI_number: 17546165 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Ralstonia solanacearum # 2 357 82 436 445 319 47.0 5e-87 MRYQAESLEPFDLLAELGRDCVGAIQLLNVDEEPTDLFSVNYRPLSEADIATTLRNTTAA SLPGRQDETDDLRLSIAGAQEKTALLWHEEQWCLPEGNTPTTHIFKLPLGLVGNMQADMS TSVENEWLCSLLLEHYGIPVAKTQIAQFEDQKALVVDRFDRRWSGDRQWIIRLPQEDMCQ ALGVSPLRKYQSDGGPGISDIMDILSHSDQAEQDKEQFFRAQIIFWLLAATDGHAKNFSI AIEPQSHYHLTPLYDVLSAWPVIGHGNNQIHWQRCKLAMAVRGSSNYYHIYRIQRRHWIN HGELNGLGRRQVESMMDDIISSTPEVIERVSALLPESFPPELAECIFDGMRQQCGRLAER G >gi|283548477|gb|GG730300.1| GENE 429 472005 - 473138 607 377 aa, chain - ## HITS:1 COG:no KEGG:SARI_03089 NR:ns ## KEGG: SARI_03089 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 377 1 377 377 662 95.0 0 MTPYIQALIAMTGDKLQQRMQKDPTTASDSLLFMGNQHDTVPRRLLQDPLLSPRDKFAWQ VIRMQAQDNGGAVFPSYSELQVQLSNRPQDEKASRSTVSRALLMLRLTRWLSLCHKARDR VSGRILGNIYALHDEPLSVLDAVRFDASYLHLLEQCSRHENKAIRATAQGILYDIRQDTS LRYLSSRIELLEERARWQQRQSPEKTKPETSGLNTVPGKISPGTESGLSRKPGPGGLVSN QDRAPVRTVPTDLCNSTTARANNSPPNWPPEIPLTHPEKQLVLQAMQNLPPPLRQDVLDD AAQRVARGGIQNPLAYLLATLRKAQEGEFNQYRRGKAAVPEFVPPVVSGPDIPARPRQKR DISKLVAEIRAQYLGRG >gi|283548477|gb|GG730300.1| GENE 430 473157 - 473696 670 179 aa, chain - ## HITS:1 COG:no KEGG:SARI_03088 NR:ns ## KEGG: SARI_03088 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 179 1 179 179 324 98.0 1e-87 MLPTINQAVLSQVIQALKDGNVRYCEALGFDREELNELNALTFEELMHMGNTSAQFLKIT INHDVLRKMLVQVRQEQKFQQLVGQAVQLGGSIALISHYFGISTAEISARRRLMGIHVRQ GRNQVPGEEEEAALWNRWQEIKVDNIDSIPALEAMMLLAQERSLSLTVVWNLIRQWEKS >gi|283548477|gb|GG730300.1| GENE 431 473680 - 475164 1195 494 aa, chain - ## HITS:1 COG:no KEGG:SARI_03087 NR:ns ## KEGG: SARI_03087 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 494 1 494 494 860 94.0 0 MNNKLTSTELQSRLLQGNFDRGRSPDERFADPLMETSMIVTLEQLRPYDLNPRLIRNPSY DDIKESIRRRGLDTPPPITRRPDQEWFIIANGGNTRLSILNELWRETHDERFWRIQCLYK PWAGTSDQPMLGELRCLIGHLAENDMHGKLSFIERALGINKARELYQQVEKCQLSQRELA EHLKNDGYPINQSHISRMEQALEYLLPSIPEVLYAGMGRSQVEKLLSLRAASLHLWQRHE AEDIGSFDNLFSSALSLFNDQPEDFAIERVQDELLGLMSQELNVDYNLLLLDVDPSEQKR QAVLGPTPEPPPYVPPEEPEPRPITRRRKPETEEEEVGAPAPLPEPEEAPSLLCEGTEPV TDIWRIPQLWDTTESLRSVSDRLAWDLAEHYAIDDRIISDADVNGIGFQVMPFASDHPMF TRPQSRACWALLAALNEIPLTEDLAAALTPTLFFQHDADGFFFSDEFLIKAFRLIRIVRR IKEFQQEAQHAADD >gi|283548477|gb|GG730300.1| GENE 432 475161 - 476516 1129 451 aa, chain - ## HITS:1 COG:STM4246 KEGG:ns NR:ns ## COG: STM4246 COG0305 # Protein_GI_number: 16767496 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Salmonella typhimurium LT2 # 9 445 27 464 471 434 52.0 1e-121 MSKRKRPQPPHSVEAEQSVLGGLMLDNDRWDDVTTQISAQDFFISAHRTIYSHMQTLVEQ GNPIDLITLSESLEQQEQLEQVGGFAYLAELSKNTPSAANIIPYAQYIASYGELRQLLLL GNELSDMAGQPRSNVADVLNFAEQKLFAIARSHQDGGLTDINACFDNVLAGIAQRYEAER GSLSGTPSGLEQLDALTCGFQPADLIIAAARPSVGKTAFALTLCVNALMLLPTQPVQIYS MEMSAEQLLLRLVSLIGRVSQTRLRSGDLSDDDWQQIGLSASILMNEWKDRLLLDDSGIL TPSLLRSRARRSLRQYGLPSLIVVDYLQLMRSGGAENRNQEISTISRSLKALAKELNCPV LALSQLNRALESRLNKRPCNADLRDSGSIEQDADVILFLYRDELYDPNTLDRGIAEVIVS KQRNGPIGTVRTRFISDQTRFESLSQQGVGS >gi|283548477|gb|GG730300.1| GENE 433 476509 - 476883 436 124 aa, chain - ## HITS:1 COG:no KEGG:SARI_03085 NR:ns ## KEGG: SARI_03085 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 124 1 124 124 219 97.0 2e-56 MKRKIWRAFCSYYAQHPFEKDDEVIVFFEAADREEARETLPVLMSLLWHIPPEKVDCYNL EDENELRDTSGSLTSPRDWPLFEIGWSNNKPLYSSDLPLLLLPPHQQTRLWETFLACQEG NRDE >gi|283548477|gb|GG730300.1| GENE 434 476880 - 477764 829 294 aa, chain - ## HITS:1 COG:XF1785 KEGG:ns NR:ns ## COG: XF1785 COG1192 # Protein_GI_number: 15838385 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Xylella fastidiosa 9a5c # 13 282 3 266 291 221 50.0 1e-57 MKNADALDLPTLIAAILSTKGGVAKTTDTANLGGYLADQGLKVLMIDADIRQPTLSSYYP LDNEAPGGVYELIAQNELDPAVIISHTTIPGLDIIISNDPRGELMSLLQAAPDGVIRLRH LVRQITGYDVILIDTIGARTIALEMVLLASDLIISPVLPEMLSAREFLRGTLQMYRDLQP FTRYGIPLPPLKAVINKLDHTNDAREIHHNLLQVLQHKQKEQELLVPTEILMTPVYASVA YRRAASLGIPVHRLDTSRARGRATPCAAETMRMLAEELFPQFLALPHQQMEGIA >gi|283548477|gb|GG730300.1| GENE 435 478306 - 478446 81 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283834967|ref|ZP_06354708.1| ## NR: gi|283834967|ref|ZP_06354708.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 46 1 46 46 69 100.0 9e-11 MSIKNIFLQVKNLFKFKTFILPRIAISERLRVLVLCTRDIAMRGRA >gi|283548477|gb|GG730300.1| GENE 436 478752 - 479372 359 206 aa, chain + ## HITS:1 COG:no KEGG:KPN_04712 NR:ns ## KEGG: KPN_04712 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 206 1 206 206 347 100.0 3e-94 MSVIALVRQRINRMRRGIPFSISGFYPLGSRASVQQAMSRLAKEGMIVRVDRGFYARPKP LKNIPSIKIVTSAEKVVAAWAKERGYKITIQGLEAAYRLGMQTQAPVKRIYWSNGPTREF KVGNETVIVQHKSESKLKWLNRPEGELLRGLLSLSGKYARLEAIKNAFNRLNISSREARS AIAKKLVSEPALQGWRTQLELFRQAI >gi|283548477|gb|GG730300.1| GENE 437 479372 - 480433 552 353 aa, chain + ## HITS:1 COG:no KEGG:KPN_04713 NR:ns ## KEGG: KPN_04713 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 353 1 353 362 685 98.0 0 MSSIFELYKTEEGRGQLQEIFSYAAQKHPLSLGASFLEKDLWVTEILRLLFDEGFLHPYT VAFKGGTSLSKCWNVIERFSEDIDLSIHWAELAGHSEEQEQEAWKASTRSRSQNQRFREQ QQTRLEEWTAELVEKLNQRFQSYGISGLEARLEAESRGEKVDIFFPRVHADSAAYQRDHI LLEFGGRNRGKPTDTITVSSYLSGIKELGELELPSATVQAYNPGYILWEKITALHQFCTQ EKELNAERLSRHWYDVDCLLQHQFADLYDTKEAMHNVIEMKQQRWTFPGVDYTLVAKGEL RLVPEDAGRLAAIAEDHRIAIEGGMFFKEPDGFDKIIERLQQVQDEFNCAMKR >gi|283548477|gb|GG730300.1| GENE 438 480590 - 481417 463 275 aa, chain - ## HITS:1 COG:Z5892 KEGG:ns NR:ns ## COG: Z5892 COG3440 # Protein_GI_number: 15804871 # Func_class: V Defense mechanisms # Function: Predicted restriction endonuclease # Organism: Escherichia coli O157:H7 EDL933 # 1 265 12 291 294 375 67.0 1e-104 MSSSKNLQQAIADITIWRKGEQRAPHKPLLLLYVLAGYQQGHGRLFDYGSEVRDPLHSLL ERFGPLRAQYRPDMPFWRLQGDGFWELQNAEHCSSKQPPAGELVTHNVAGGFDAQHLVLL KKSNNLINALAQQILEAHFTESIQEEIADELGFDILQIRKQRDPLFRQQVLRAYNYECAT TVLRLPWKPPISNGNSTAGPARFQTAWRHHKAFDKGSIGLDESMRVLVSPAVNGSGMVGI LFWDFDGKSIALPMMRGNYPKEGFVEWHRKEVFRG >gi|283548477|gb|GG730300.1| GENE 439 482112 - 483482 1662 456 aa, chain + ## HITS:1 COG:FN1988 KEGG:ns NR:ns ## COG: FN1988 COG3033 # Protein_GI_number: 19705284 # Func_class: E Amino acid transport and metabolism # Function: Tryptophanase # Organism: Fusobacterium nucleatum # 2 453 5 456 460 793 82.0 0 MNYPAEPFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQ WAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGN MYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICL AVTVNLAGGQPVSMANMRAVRELTAAHGIKVFYDATRCVENAYFIKEQEQGFANKSIKEI VHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSAAKELVVVYEGMPSYGGLAGRDME AMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDE FPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDIV ADGIIKLYQHKEDIRGLKFIYEPKQLRFFTARFDYI >gi|283548477|gb|GG730300.1| GENE 440 483672 - 484937 1436 421 aa, chain + ## HITS:1 COG:ECs4042 KEGG:ns NR:ns ## COG: ECs4042 COG0814 # Protein_GI_number: 15833296 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Escherichia coli O157:H7 # 11 421 9 414 414 327 48.0 2e-89 MDINAIERQSSTPGLISGTMLVIATVVGGGMFSLPIAMAGVWFPGASVILLFIAIMMLLT GLMLVEVNLHYGAGASFNTFTQDLLGRKWNIVVGIAFGFVLYILTYAYISGSSAVMAQTV FKYSGVRFPANISVVIVSMLVGAIAWYSSLLVGRITTVLIIGKFVAFFATFSGLVGHIEV AKLVDSVAVALPHSQYLPYILMTLPFCIISFGFHGNVPSLAKLYGTSGISNITRSIIIGT LFALLLYIFWLGVTMGNISRAEFPPIIAKGGNIDVFVEAISELFTSRYMDLILTFFGNFA VASSLLAATLGLFDYIADLFHFPDDGMGRLKTALVTYFPPAAVCFFFPNGFVHAIGYAGL AFTIWSVILPPFLVKAARKRFSTASYTAPCNNAVLNLVIVCGAIVYLTVVLDVFGLLPTF R >gi|283548477|gb|GG730300.1| GENE 441 485335 - 485547 96 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086050|ref|ZP_06571320.1| ## NR: gi|291086050|ref|ZP_06571320.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 70 1 70 70 124 100.0 2e-27 MVTVSSNTIAANVMGLTTGYAISIGIFNFTIKNTLHSKKRDCHSFIAIPDGHIKPDLYLL RNNNITGLIY >gi|283548477|gb|GG730300.1| GENE 442 485875 - 486594 719 239 aa, chain + ## HITS:1 COG:ECs0344 KEGG:ns NR:ns ## COG: ECs0344 COG0247 # Protein_GI_number: 15829598 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 460 93.0 1e-129 MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQPAINSGYINEAIPGMK NLIAALEDNDDPIISPAGSCTYAIKSYPTYLADEPEWALRAENVAARMQDLTSLIVNKLG VVDVGASLQGRAVYHPSCSLTRKLGVKEEPLTLLKNVRGLELLEFADRDTCCGFGGTFSV KMAEISGEMVKEKVFHLMDAKPEYLIGADVSCLLNIGGRLQREGQPVKVMHIAEVLMSR >gi|283548477|gb|GG730300.1| GENE 443 486605 - 488032 1552 475 aa, chain + ## HITS:1 COG:ykgF KEGG:ns NR:ns ## COG: ykgF COG1139 # Protein_GI_number: 16128292 # Func_class: C Energy production and conversion # Function: Uncharacterized conserved protein containing a ferredoxin-like domain # Organism: Escherichia coli K12 # 1 475 1 475 475 951 94.0 0 MSIKTSDVEFKLRIRQQIEDPIMRKAVANAQERIGANRQKMVDELGHWEEWRDRASQIRD RVLSNLDAYLYQLSEKVTQNGGHVCFAKTKEEATRYILQVAQSKNAQKVVKSKSMVTEEI GVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHKDRYQIRRVLHERLGYDGPET PEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG MERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTGPREADNVDGPEEFHLVIVDNGRSQ VLGSEFRDVLRCIRCGACMNTCPAYRHIGGHGYGSIYPGPIGAVISPLLGGYKDFKDLPY ACSLCTACDSVCPVRIPLSKLILRHRRVMAEEGITPKAERRAIKMFAYANSHPGMWKVGM MAGAHAASWFINGGKTPFRVGAIGDWMEARDLPDADGESFRSWFKKHQAQEKKNG >gi|283548477|gb|GG730300.1| GENE 444 488025 - 488720 789 231 aa, chain + ## HITS:1 COG:ykgG KEGG:ns NR:ns ## COG: ykgG COG1556 # Protein_GI_number: 16128293 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 231 52 282 282 382 84.0 1e-106 MDNRTAFLTTVAQALGRPLRYEPQADAAPVNNYANERLTELSPEQRCEAFIQFASEVMLA RCELTSEDQAADAALRLCEELGQQPVVLSGDSRLVELGITERLQQACNAAVWDPARGSEN ITQAERAKVGVVYAEYGLTESGGVVLFSAPERGRSLSLLPESSIFVLRKSTILPRVAQLA EKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC >gi|283548477|gb|GG730300.1| GENE 445 488770 - 490113 1904 447 aa, chain - ## HITS:1 COG:ECs5280 KEGG:ns NR:ns ## COG: ECs5280 COG2610 # Protein_GI_number: 15834534 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Escherichia coli O157:H7 # 1 447 1 447 447 685 96.0 0 MHVLNILWVVFGIGLMLVLNLRFKINSMVALLLAALSVGMLAGMDLMELLHTMKSGFGST LGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLSVIIIGLIFGLAMFYEVA FIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQPGPVALVNAYGADMGMVYIY GILVTIPSVICAGLILPKFLGNLERPTPSFMKADVPVDQNNLPSFGVSILVPLIPAIIMI STTIANIWLVKGTQAWEVVNFLGSSPIAMFIAMIVAFVLFGTARGHDMQWVMNAFENAVK SIAMVILIIGAGGVLKQTIIDTGIGDTIGMLMSHGNISPYIMAWLITVLIRLATGQGVVS AMTAAGIISAAILDPATGQLVGVDPALLVLATAAGSNTLTHINDASFWLFKGYFDLSVKD TLKTWGLLELVNSVVGLIIVLIISMIA >gi|283548477|gb|GG730300.1| GENE 446 490375 - 491559 1641 394 aa, chain + ## HITS:1 COG:uxuA KEGG:ns NR:ns ## COG: uxuA COG1312 # Protein_GI_number: 16132143 # Func_class: G Carbohydrate transport and metabolism # Function: D-mannonate dehydratase # Organism: Escherichia coli K12 # 1 394 1 394 394 773 93.0 0 MEQTWRWYGPNDPVTLADVRQAGATGVVTALHHIPNGDVWTVDEILKRKAIVEQAGLVWS VVESVPIHEDIKTRSGNYLQWIANYQQSLRNLAQCGIRTVCYNFMPVLDWTRTDLEYVLP DGSKALRFDQIEFAAFELHILKRPGAEADYTAEEVVQANERFATMSEEDKARLTRNIIAG LPGAEEGYTLDRFRQHLERYKDIDKAALRENFAVFLKAIIPVAEEVGVRMAVHPDDPPRP ILGLPRIVSTVEDMQWMVETVSSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLR STLREDNPKTFHEAAHLNGDVDMYEVVKAIVEEEQRRKAEGKEDLIPMRPDHGHQMLDDL KKKTNPGYSAIGRLKGLAEVRGVEMAIQRAFFSR >gi|283548477|gb|GG730300.1| GENE 447 491640 - 493115 1899 491 aa, chain + ## HITS:1 COG:uxuB KEGG:ns NR:ns ## COG: uxuB COG0246 # Protein_GI_number: 16132144 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli K12 # 3 487 2 486 486 920 90.0 0 MTTTIANSDLPVARPAWDSSRLQSRIVHLGCGAFHRAHQALYTHHLLETTDSDWGICEVN LMPGNDCVLIENLRKQQLLYTVAEKGADNTVLKVIGSMKEALHPDLDGCDGILQAMARPQ TAIVSLTVTEKGYCTDAASGQLDLNNPLIKHDLANPAAPKSAIGYIVQALHLRREQGLAA FTVMSCDNVRENGHVAKVAVLGLAQARDPQLAQWIEANATFPCTMVDRIVPAATPETLQE IADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDNVGAQFVADVVPFEMMKLRMLNGSH SFLAYLGYLGGYETIADTMTNPAYRKAAFALMMQEQAPTLSMPEGTDLNAYATLLIERFS NPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQNGSGWRHLALGVAGWMRYTHGVDEQGQA IEVVDPMLAEFQRINQRYQGAERVTALLGLSGIFGHDLAENADFVEAVIAMYQQLCELGA RECVAALNADV >gi|283548477|gb|GG730300.1| GENE 448 493248 - 494021 956 257 aa, chain + ## HITS:1 COG:STM4507 KEGG:ns NR:ns ## COG: STM4507 COG2186 # Protein_GI_number: 16767751 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 257 1 257 257 455 91.0 1e-128 MKSNTSQQRPYQEVGAMIRDLIVRTPYLPGERLPPEREIAERLNVTRTVVREALIMLEIK GLVEVRRGAGIYVLDNADAQTIDGNDVNHCNDAGPFELLQARQLLESNIAEFAALQATRE DIVKMRQALQLEERELSSGEPNGSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPM WIQLHSHLDDTHYRKEWMGDHKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDI DFDGYLFESWPLDKVNA >gi|283548477|gb|GG730300.1| GENE 449 494668 - 494877 250 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|261339643|ref|ZP_05967501.1| ## NR: gi|261339643|ref|ZP_05967501.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] # 1 58 1 59 69 64 64.0 2e-09 MPSRDYPDIRKARGTRSKDMVLLSARVDTSLWEYVRTLAFETRKSKQDIIAEALMLYRSV NESVNEESQ >gi|283548477|gb|GG730300.1| GENE 450 495056 - 496063 1190 335 aa, chain + ## HITS:1 COG:phoE KEGG:ns NR:ns ## COG: phoE COG3203 # Protein_GI_number: 16128227 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein (porin) # Organism: Escherichia coli K12 # 1 335 1 351 351 279 51.0 6e-75 MKKSVVALAVMALGVTSVHAAEIYNKDGNKLDLYGKVKAVHSWTDGTDADGTYARLGFRG ETQINDQLTGYGQFESQFDASKAEGSQNGVNTRLAFAGLDYGHDVSFDYGRNYGIAYDVG AYTDTLSEFGGDSFEDTDRFLTTRTSGVATLRTKNLFGAVDGLNVGAQYQGQDDTDANPA KQHGNGYGFSLGYDNIADSGVSAIAAYTNSSVTAQQKQKGWDGEKAEFWGAGLKYDANAI YVATMYGESHNLIQDADKAEHFEAMAAYVFDFGLRPNVAYVHARDNNNNDLTEYVALGTD YYFNKNMVADVGYKINLLDGADGDNQVVAGLTYQF >gi|283548477|gb|GG730300.1| GENE 451 496243 - 497430 1049 395 aa, chain - ## HITS:1 COG:STM4515 KEGG:ns NR:ns ## COG: STM4515 COG0477 # Protein_GI_number: 16767759 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 387 1 387 394 473 78.0 1e-133 MSQGSPESNRHAISVALFGMLVLTLGMGIGRFLYTPMLPVLLSEGQFTFDQLSWIASANY AGYLAGSLLFSFGLFHLPSRLRPMLLISALATAGLILAMACLTQPALVMLTRFLAGVASA GMMIFGSTIVLHHTRHPFVIAALFSGVGAGILLGNEYVISGLYFALSSHTLWLGAAAASA LFFVLLVLLLPSRDHALPAAAQVKTEHQPMSWWLLALLYGLAGFGYIIVATYLPLMAKSA GSPLLTAHLWSLVGISIIPGCFAWLWAARRWGILQCLTANLLIQSACVVMTLASDSLPLL VISSVGFGATFMGTTSLVMPLARQLSVPRNINLLGLVTLTYGIGQILGPLLTSLLGSGAQ AIVNATLCGAAALFIAALISLTQLYKQHFANPKRV >gi|283548477|gb|GG730300.1| GENE 452 497528 - 498808 1499 426 aa, chain - ## HITS:1 COG:STM4516 KEGG:ns NR:ns ## COG: STM4516 COG2733 # Protein_GI_number: 16767760 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 423 1 423 423 738 91.0 0 MNKIAELKRAKRLALSLLLIAAAAFVITLFLPPNFWVLGIKAIAEAAMVGALADWFAVVA LFRRVPIPFISQHTAIIPRNKDRIGENLGQFVQEKFLDTQSLVALIRRHEPALLIGNWFS QPENARRIGQHLLQIMSGFLELTDDARIQRLIKRAVHKAIDKVDLSETSALMLESMTKNN RHQVLLDTLIAQLITLLQRDSSRAFIARQIVHWLETEHPLKAKILPTEWLGEHSAELVSD AVNSLLDDISHDRAHQIRHAFDRATFKLIDKLKHDPEMAVRAESLKSYLKEDEAFNRYLG ELWADLRQWLKTDISADDSRVKQRIANAGQWFGETLVADSALRASLNGHLEQAAHKVAPE FATFLTRHISDTVKSWDARDMSQQIELNIGKDLQFIRVNGTLVGGSIGLVLYLLSQIPSL LTLANF >gi|283548477|gb|GG730300.1| GENE 453 498883 - 499809 903 308 aa, chain - ## HITS:1 COG:YPO0276 KEGG:ns NR:ns ## COG: YPO0276 COG0583 # Protein_GI_number: 16120615 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Yersinia pestis # 8 305 22 319 328 311 50.0 1e-84 MSTPISLKHLEFFTKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSIT LTDAGQYLFNRANKLLKEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRAQ FPDVNLYIDLNDNFVNLNETDFDIALRISSAPPQNYAMRKLVPVRWAYCASPGYLAKKGM PQRRSDLVNHDCLVYPGLTPVLKVADEQDRLHQLKLHMPIQANSSLVLLKSVLEDQGVAY LPTYLIGDHIQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFLVAELGPLP AWDNWIPE >gi|283548477|gb|GG730300.1| GENE 454 500033 - 501265 1566 410 aa, chain + ## HITS:1 COG:CT401 KEGG:ns NR:ns ## COG: CT401 COG1301 # Protein_GI_number: 15605126 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Chlamydia trachomatis # 14 402 7 402 412 131 26.0 3e-30 MWSRLEPYRSSIILLVALVIGGLLGIYAPALAGKLQPIGQIFLNLLFMIIVPLVGISVMS SIASMTDLKRLGRIMAIIFIVSIAMAFIPAAGIVALALWYNPAQGVTIDLSQSVQAGSGK MDFVSMITTSDFIGLFSKSNILALIVMAIVAGVAIGQSDQAGKRIASLLEDANTVIMKIV SIIMKVAPIGLGCYFAATMASQDSALLLTFARAIGLFMVATLVYFVFGSILYSYIGGGIP AVKAFWRNAIEPSATALGTCSSLGTLPVTLRAGKAMGINPEIVDVSIPLLVNLNKGGVAM IAALKIVFIYSVLGMEFTTETFFLTMLIAVLSAIIVGGVPGGAFLGEIFIVTTLGLPMEA IPMLVVLGTITDAPATLINVIHDLNAAQIVERFAGKKQTNAEINSTAAVV >gi|283548477|gb|GG730300.1| GENE 455 501297 - 502487 1099 396 aa, chain + ## HITS:1 COG:ECs3892 KEGG:ns NR:ns ## COG: ECs3892 COG0626 # Protein_GI_number: 15833146 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli O157:H7 # 6 395 5 394 395 620 73.0 1e-177 MKDAMKLETHLVVAGRDKRYTQGAVNPVIQRASSLVFDTVKDKKFATANRANGELFYGRR GTYTHFAFQKAMSELEGGVGCALYPCGAAAVTNAILAFVQSGDHILMTGAAYEPTQDFCN KILSKFNVATTYYDPLIGAGIVDLLRPETKVVFLESPSSITMEVQDVPGMVKAIRAVNPE IVIMIDNTWAAGVLFKALDFGVDISIQAGTKYTIGHSDGMLGTAVSNARCWDRLRENSYL MGQTLDADTAYNGSRGLRTLAVRLKQHQESSIHIARWLSARPEVARVNHPALAECPGHEY FQRDFTGSSGLFSFVLKKRLTDEQMANFLDNFSLFHMAYSWGGFESLILANQPEELNSIR PAGEVDFSGTLVRVHIGLEDVDDLIADLAAGLARIA >gi|283548477|gb|GG730300.1| GENE 456 502727 - 503287 301 186 aa, chain + ## HITS:1 COG:ECs0317 KEGG:ns NR:ns ## COG: ECs0317 COG3477 # Protein_GI_number: 15829571 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Escherichia coli O157:H7 # 5 182 2 200 204 226 57.0 1e-59 MKLKDLFTRTPTERRRYGIAVLVGIVSGVLSAFVKWGAEVPLPPRTFSLGRDEFNPPYLF LRDYLGIDPTQTVYTFSEHVINPVMVTHIIFSLVFAVGYCVAAEIFPKVKLWQGVLAGLI VTVAVHGIFIPALHLSPPLSQLPFDEYASEIIGHIFWFWVIEMIRRDLRNRITHEPDAEI PLSLVR >gi|283548477|gb|GG730300.1| GENE 457 503373 - 504614 1127 413 aa, chain - ## HITS:1 COG:STM4517 KEGG:ns NR:ns ## COG: STM4517 COG0477 # Protein_GI_number: 16767761 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 412 1 412 413 620 90.0 1e-177 MQRIIAFFSQRATTLFFPIALILYDFAAYLSTDLIQPGIINVVRDFNADVSLAPAAVSLY LAGGMALQWLLGPLSDRIGRRPVLIAGALIFTLACTATLFTTSMTQFLVARFIQGTSICF IATVGYVTVQEAFGQTKAIKLMAIITSIVLVAPVIGPLSGAALMHFVHWKFLFAIIAVMG LIALTGLALAMPETVQRGAVPFSALGVVRDFRDVFRNRVFLFGAATLSLSYIPMMSWVAV SPVILIDAGGMTTSQFAWAQAPVFGAVIVANMVVVRFVKDPTRPRFIWRAAPIQLSGLAV LMAGNILWPHVWLWSVLGTSLYAFGIGMIFPTLFRFTLFSNKLPKGTVSASLNMVILTVM AVSVEIGRWLWFNGGRISFHLLAVVAGIAVVFTLAGLLKRVRQHEANALAAES >gi|283548477|gb|GG730300.1| GENE 458 504937 - 505599 557 220 aa, chain - ## HITS:1 COG:BH2932 KEGG:ns NR:ns ## COG: BH2932 COG1280 # Protein_GI_number: 15615494 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Bacillus halodurans # 12 208 2 207 210 82 29.0 6e-16 MSLLSVLFPSAFPALALAHFVALLSPGPDFFLLVGYAVRYRMRGSVGLCVGIAIGNGLYI LLAIVGWGLLRQLPLLFTVIELLGALYLLWIGSLLIRSRPQALTGENTQATCPGFGKQLL LGLASSLLNPKNALFYLALMTALLGPSVTLLQQSMSGIWMTSVVLLWDLLIVMFIGLPQI QRRLTKGILWIERIAGGVLIVFGSLIAVRLVQSLTRGTFC >gi|283548477|gb|GG730300.1| GENE 459 505648 - 506463 315 271 aa, chain - ## HITS:1 COG:AGc1998 KEGG:ns NR:ns ## COG: AGc1998 COG2207 # Protein_GI_number: 15888424 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 11 264 23 285 285 93 28.0 4e-19 MTHTRDIPQSFWRDEQFPWLELRSTWRSQLDYKRHHHSQLSVGAILEGETCCQCDGKEYR LSAGDLIVIPPLAPHSCNPVNGLFRSYHMLYLDTRWCLAHLPALSSSQQLCSRHPVIRDP HLFQRYLRLVALMQRNQTPQIPDAAQALIRSLPLQSVKAQSLSATSQYLREQLQSSLIAP PSLDALAYECRMRKETLIRTFKQETGLTPGSYLNILRVDYARRRLRAGDEIADVGYQSGF ADQSHFHRTFVRYTAATPRQYALGRSISDNN >gi|283548477|gb|GG730300.1| GENE 460 506694 - 507644 492 316 aa, chain + ## HITS:1 COG:STM3508 KEGG:ns NR:ns ## COG: STM3508 COG5464 # Protein_GI_number: 16766796 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 316 1 304 304 441 68.0 1e-123 MSKVTTSTPHDAVFKTFLRHPETARDFLQIHLPASLRELCDLQTLKLESDSFIEEDLRAY YSDVLWSVNTTEGDGYIYVVIEHQSTPDAHMAFRLMRYAVAAMQKHLDAGHPQLPLVVPM LFYHGAKSPYPYSLCWLDEFASPQLARQVYAAAFPLVDITVIPDDEIVQHRRMALLELIQ KHIRQRDLMGLIEQIVSLLLTGVTNDSQIKTLFNYILQTGDAPRFSEFIRGVAERSPQHK EHLMTIADRLHEAGLQKGRLEGRQEGRQEGRQEGLLEGRRDEALRIARTMLKDGIDISTV QKITRLSAEDIQSLSH >gi|283548477|gb|GG730300.1| GENE 461 507696 - 509108 1114 470 aa, chain - ## HITS:1 COG:yjiR KEGG:ns NR:ns ## COG: yjiR COG1167 # Protein_GI_number: 16132161 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Escherichia coli K12 # 1 470 1 470 470 811 80.0 0 MTRYQHLANLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLEQLQLITPQP RSGYFVAPQKAQPPVPPMSRPVQRPVEITQWDQVLDMLKGNADRSITPFSSGVPDINQPS LKPLWRELSRVAQHNLRAVLGYDEIYGCRELRNQIARLMLDGGSVVDADDIVITSGSQSG MSLALLTVCQPGDIVAVESPAYYGTMQLLRGLGIKVIEIPTDPDTGISIEALELALDQWP IKGVLLVPNCNNPLGFIMPDARKRAVLALAQRHDIVIFEDDVYGELATEYPRPRTIHSWD SDGRVILCSSFTKSVAPGLRVGWVIPGRYYDKLLHMKYAVIGTSVPATQLAAAAFVREGH YHRHIRRMRQIYQRNMEIYTCWVREYFPCDICVTRPKGGFMLWVELPQQVDMVCVAKQLC RLKIQVAPGSLFSASGKYRNCVRINCALPPDEKHQEVMQKLGEAVKTAIE >gi|283548477|gb|GG730300.1| GENE 462 509286 - 509450 168 54 aa, chain + ## HITS:1 COG:yjiS KEGG:ns NR:ns ## COG: yjiS COG5457 # Protein_GI_number: 16132162 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Escherichia coli K12 # 1 54 1 54 54 64 74.0 6e-11 MEFHENKAKQPFIGFVQIWQAYKAWRLRGQTRRVLQQMSDERLRDVGLRRDQVE >gi|283548477|gb|GG730300.1| GENE 463 509599 - 510063 465 154 aa, chain + ## HITS:1 COG:STM1444 KEGG:ns NR:ns ## COG: STM1444 COG1846 # Protein_GI_number: 16764792 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 11 151 6 146 146 72 31.0 2e-13 MTEDERFARRPMGMRMAMVVRQWRAIIDTAITDTGLTQSSWTVLMQLHQLGDNVSVSELA QVQGIELPPLMRTLTLLEKQGYLLRSISPYDKRIRLLTLTAQGRTRLEELNRVIEMYQHR VTCTIPEAELAAFSATLNQIACNLRTIREEDNQH >gi|283548477|gb|GG730300.1| GENE 464 510070 - 511137 1197 355 aa, chain + ## HITS:1 COG:PA3360 KEGG:ns NR:ns ## COG: PA3360 COG1566 # Protein_GI_number: 15598556 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Pseudomonas aeruginosa # 2 355 1 352 352 296 49.0 3e-80 MMTPEQKFARWVRVSIAAFLVIFAWFIVADIWIPLTPDSTVMRVVTPVSSRVSGYVSQVY VHNNSQVKKGDLLYELDPTPFINKVEAAQIALEQAKLSNQQLDAQIASARANLRTAQFNA RNDKTTFDRYQRLSAMQNVSQSDLDKVRTAWQTSEQSVAALNASIQNLLIQRGERDDSRN VTLQKYRNALEEAQLNLGWTKVHAETDGTVSNLQLSPGLYATAATPLLALVSHQTDIVAD FREKSLRHTRVDTDAAVVFDAMPGKVFSARVTSSDAGILAGQEQVNGQLSQPEQSTRWVR DAQRMRIHVALNESLDAPLPTGARATVQLYNSEGMFARTFAGAQIHLVSWLHYVY >gi|283548477|gb|GG730300.1| GENE 465 511127 - 512191 1282 354 aa, chain + ## HITS:1 COG:no KEGG:CKO_03446 NR:ns ## KEGG: CKO_03446 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 354 1 354 354 605 96.0 1e-172 MSINTLAHVFTPHGNIVYTANDFRQTLRISVAGTIALSISTFYNVQYGVFFVVYPLMLLS LVPVFNRHVAKQFVFSAAVNCVEMVLIVGYLSQWPPIMTLVVFGLYVMRFRFMSKGPLFL LGSMGVVCQSTMLNFMSYPTTNWHTLMFSNMEACVMAVALSALLHYLIPDVAPRLPPPRI EKDAARVRHESLLSGTVATMIFVVFQICDLSDSLSALMAGILILFPMHYRGAVISSIWRV VGVVLACLYILLVQLLIYDFSNHMVLMMPLIGLGLAFSARLHVMEKVGAGVGFASITTIG IMFGQNLHPDRDLVFSDLYRITSVTVALVATLTMVFLVHRVLNCFAATRFVITE >gi|283548477|gb|GG730300.1| GENE 466 512298 - 512642 342 114 aa, chain - ## HITS:1 COG:no KEGG:t4573 NR:ns ## KEGG: t4573 # Name: yjiW # Def: endoribonuclease SymE # Organism: S.typhi_Ty2 # Pathway: not_defined # 1 108 22 129 131 153 70.0 2e-36 MTTPHSIAEFTDPEVSPANNRLGTVTYASRYPDYTHVPAIIMKGQWLEAAGFTTGCKFDV RVMPGCIVLTTKLPEPEEPALLQSLRRVCKLSARKQQQVQEFIEVISAKPRRQK >gi|283548477|gb|GG730300.1| GENE 467 512859 - 514574 732 571 aa, chain - ## HITS:1 COG:ECs5306 KEGG:ns NR:ns ## COG: ECs5306 COG0732 # Protein_GI_number: 15834560 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Escherichia coli O157:H7 # 1 571 1 584 584 501 51.0 1e-141 MAVEKLIVDHIDTWTTALQTRSTAGRGSSGKIDLYGIKKLRELILELAVRGKLVPQDPND EPASVLLERIAAEKAELVKQGKIKKTKPLPEISEEEKPFELPVGWEWVRLGEIVEVLDYM RKPISKDERTQGIYPYYGASGIVDHVSDYIFDDKLVLVGEDGAKWRKGDKTAFCISGKSW VNNHAHVLKVFKSIITNEFLVNYLTISDLAHFITGTTVPKLNQAKLISIPVIISPIKTQI NINAKIEQLMSLCDQLEQHSLTSLDAHQQLVETLLTTLTGSQNADELAENWARISEHFDT LFTTEASIDALKQTILQLAVMGKLVPQDPNDEPASELLKRIAQEKTQLVKDGKIKKQKPL PPISDEEKPFELPSGWEWCRLGSIFNFLNGYAFKSEWFSPAGLRLLRNANIAHGVTNWKD VVYIPNEMRDDFENYVLSENDIVISLDRPIINTGLKYATIRKSDLPCLLLQRVAKFKNYA NTVSNTFLTTWLKSYFFINSIDPGRSNGVPHISTKQLEMTLFPLLSQSEQDRIISKANEL ISICEKLKYHIQTTQQTQLHLADALTDAAIN >gi|283548477|gb|GG730300.1| GENE 468 514574 - 516043 2009 489 aa, chain - ## HITS:1 COG:ECs5307 KEGG:ns NR:ns ## COG: ECs5307 COG0286 # Protein_GI_number: 15834561 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Escherichia coli O157:H7 # 1 489 5 493 493 978 97.0 0 MSISSVIKSLQDIMRKDAGVDGDAQRLGQLSWLLFLKIFDAQEEALELEQDNYQSPIPQR YLWRTWAANAEGITGDSLLEFVNDDLFPALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNG TLLRQVINKLNEIDFTSASERHLFGDIYEQILKDLQSAGNAGEFYTPRAVTRFMVDRVDP KLGESIMDPACGTGGFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNML LHGIEVPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGGTEEDGIEKNFPAEMQTRETADL FLQLIVEVLAKNGRAAVVLPDGTLFGEGVKTKIKKLLTEECNLHTIVRLPNGVFNPYTGI KTNLLFFTKGQPTKEIWFYEHPYPAGVKNYSKTKPMKFEEFQAEIDWWGNEADGFASRVE NEQAWKVSIDEVIARNFNLDIKNPHQAETVSHDPDELLAQYAKQQEEIQTLRHQLRDILG AALSGKEAN >gi|283548477|gb|GG730300.1| GENE 469 516118 - 518541 2846 807 aa, chain - ## HITS:1 COG:ECs5308 KEGG:ns NR:ns ## COG: ECs5308 COG4096 # Protein_GI_number: 15834562 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Escherichia coli O157:H7 # 1 807 1 810 810 1460 90.0 0 MADLNLSTLTEADIITKCVIPAILDAGWNHTTQIRQEVKLRDGKVIVRGKVAARRTVKSA DIVLYHKLNMPLAVIEAKANKHEIGKGMQQALDYAHLLDVPFAFASNGDGFIFHDKTATA AIEREITLDEFPTPDELWQKYCVWKGYTQAQLPVITQDYYDDNSGKAPRYYQLQAINKTI EAVSAGQSRVLLVMATGTGKTYTAFQIIWRLWKAKSKKRILFLADRNILVNQTKTNDFLP FGTAMTKVSGRTIDPAFEIHLALYQAITGPEEDQKAFKQVAPDFFDLIVIDECHRGSASE DSAWREILDYFSSATQIGLTATPKETHEVSSTDYFGDPVYIYSLKEGIEDGFLAPYKVVR VDIDVDLQGWRPTKGQTDKNGELIDDRIYNQKDFDRTMVIDERTELVAKTITDYLKRTNP MDKTIIFCNDIDHAERMRRALVNLNPEQVKKNDKYVMKITGDDDIGKAQLDNFINPKKAY PVIATTSELMTTGVDAKTCKLVVLDQNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKK ATELFADERFDGIPEKVMDTTPEDIADPESDFEEQFDEHEEETEDDITGADEDPAPYTVT GADDVGPLPEDEENKVRKFHVNGVAVGVIAQRVQYYDADGKLVTESFKDYTRKTLLKEYA SLDDFTRKWQDAERKEAIIKELEQQGIIWEVLAEEVGKELDPFDMLCHVVYGQPPLTRKE RAENVRKRNYFTKYSDAAQAVLNTLLDKYADAGVQEIESIQVLKLKPFDSMGTLPEIIKS GFGDRNGYNQAISELESEIYHLPPRSA >gi|283548477|gb|GG730300.1| GENE 470 518637 - 519803 1292 388 aa, chain - ## HITS:1 COG:MT2603 KEGG:ns NR:ns ## COG: MT2603 COG1715 # Protein_GI_number: 15842062 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Mycobacterium tuberculosis CDC1551 # 223 385 140 306 306 86 41.0 1e-16 MKNYKVITPLFPTYAQVKAMMKAVSGYSLKSVRSMITAIFEQTGTPQNPVDWSEPDLWIN ERLSGEDAEIALRIWQTDNHILNPRHSYGCYLFLNYPLFDLMASTADDIWAPTARGERFL QDDDETLRWLDDQEGLIQLLELLAGREMSRRGDLLPEWLAFLHQHSKFASDRSAKSTLYS RLYNLIDRQLAAREGMSYRITDAGRQWLTQALPTKKADPRKALLDAVKRYNEQQKGVLRE QLSTMNPYKFEHLVAQLLEAMGYEEVEVTKASGDKGVDVIGKVQVGITTITEVVQVKRMQ NTITRPYIDQLRGALPYHKAIRGTLITTGKFAAKCAEAALFPGAAPITLIDGDRLLEMLI ENNVGIRRSNAVELLDVDLQRFDELGIE >gi|283548477|gb|GG730300.1| GENE 471 520037 - 520324 216 95 aa, chain + ## HITS:1 COG:STM4528 KEGG:ns NR:ns ## COG: STM4528 COG2929 # Protein_GI_number: 16767772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 94 1 94 95 163 91.0 8e-41 MPMEFEWDANKAQSNHRKHGVRFEDAVLVFDDPRHMSRQDRYENGEYRWQTIGLVHGIAV ILVAHSVRFESGVEVIRIISARKADSKERNRYEHS >gi|283548477|gb|GG730300.1| GENE 472 520311 - 520613 327 100 aa, chain + ## HITS:1 COG:STM4529 KEGG:ns NR:ns ## COG: STM4529 COG3514 # Protein_GI_number: 16767773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 100 1 100 100 160 90.0 7e-40 MSIVKHKRGSVSALSAQHEAELKALANKPDDDIDYSDIPVTEDEQWSEASRGKFFRPLKT QASVRIDADVMEWLKRPGKGYQTRLNAILREAMLREQNKK >gi|283548477|gb|GG730300.1| GENE 473 520723 - 521679 1323 318 aa, chain - ## HITS:1 COG:STM4530 KEGG:ns NR:ns ## COG: STM4530 COG0523 # Protein_GI_number: 16767774 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Salmonella typhimurium LT2 # 1 318 1 318 318 579 90.0 1e-165 MTPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTL TNGCICCTRSSELEDALLDLLDNLDKGTIHFDRLVIECTGMADPGPIIQTFFSHDVICER YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGESEKLRERLARINARA PIYTVTHGDIDLSLLFDTNGFMLEENVVNAKPRFHFIADKQNDISSIVVELDYPVNISDV SRVMENLLLESAEKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEQPHSLLVFI GINLPEDEIRAAFAGLKK >gi|283548477|gb|GG730300.1| GENE 474 521692 - 521886 289 64 aa, chain - ## HITS:1 COG:STM4531 KEGG:ns NR:ns ## COG: STM4531 COG2879 # Protein_GI_number: 16767775 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Salmonella typhimurium LT2 # 1 64 1 67 67 114 89.0 4e-26 MFDTLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMTYEEFFRERQEARYGSGG SSCC >gi|283548477|gb|GG730300.1| GENE 475 521992 - 524142 2941 716 aa, chain - ## HITS:1 COG:STM4532 KEGG:ns NR:ns ## COG: STM4532 COG1966 # Protein_GI_number: 16767776 # Func_class: T Signal transduction mechanisms # Function: Carbon starvation protein, predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 716 1 716 716 1297 95.0 0 MDTKKIFKHIPWVILGIIGAFCLSVVALRRGEHISALWIVVASVSVYLVAYRYYSLYIAQ KVMKLDPTRATPAVINNDGLNYVPTNRNVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTL WLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPIPGTIALFGCFLIMIIILAVL ALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFLRPGRVGEVSVIGIVLLVATIYFGGV IAHDPFWGPALTFKDTTITFTLIGYAFISALLPVWLILAPRDYLATFLKIGVIVGLAVGI VILNPELKMPAMTQYVDGTGPLWKGALFPFLFITIACGAVSGFHALIASGTTPKLLACET DARFIGYGAMLMESFVAIMALVAASIIEPGLYFAMNTPPAGLGITMPNLHEMGGENAPLI MAQLKDVTAHAAATVSSWGFVISPEQILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKV LPMADMGFWYHFGILFEALFILTALDAGTRSGRFMLQDLLGNFVPFLKKTDSLVAGVVGT AGCVGLWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLGTVVLVKMQRTKYIWVT VVPAVWLLICTTWALGLKLFSTNPQMEGFFFMANQYKEKIANGGELTAQQIANMNHIVVN NYTNAGLSILFLVVVYSIIFYGFRTWQKARAINGRSDKETPYVPVPEGGVKTSSHH >gi|283548477|gb|GG730300.1| GENE 476 524508 - 526169 2081 553 aa, chain + ## HITS:1 COG:STM4533 KEGG:ns NR:ns ## COG: STM4533 COG0840 # Protein_GI_number: 16767777 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 553 1 553 553 815 92.0 0 MLKRMKIVTSLLLVLALFGLLQLASGGLFFNSLKNDKENFTVLQTIRQQQSALNATWVEL LQTRNTLNRAGIRYMMDQSNIGSGATVAELMQVASTALKLTEKNWAIYESLPRDPRQSEA AFQEINRTYDIYHGALAELIQLLGEGKINAFFDQPTQSYQDGFEKQYMSYMQQNDRLYDI AVEDNNASYSQAMWVLVCVLITVLAAIIAVWFGIKLTLISPMNRLIESIRHIASGDLVKR IEVEGSNEIGQLAESLRHMQGELMNTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAA SLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQK IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL IEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEM DRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRIQHDQQRARDVAAAKPVSTVQPRK AAVTDAGDNWETF >gi|283548477|gb|GG730300.1| GENE 477 526356 - 526871 432 171 aa, chain - ## HITS:1 COG:PA2271 KEGG:ns NR:ns ## COG: PA2271 COG0454 # Protein_GI_number: 15597467 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Pseudomonas aeruginosa # 1 170 1 171 171 134 47.0 8e-32 MNITLRSTTLADTANLPAIERSAGQRFLLIPDQAWIADDQIISVAQHRAFAAAGMSWLAQ VDERPVGFLVAETLGASLFIAELSLYLEWQGKGIGRRLMGYVAGQAREKGYTSLTLTTFR DVPWNAPLYARLGFEMLADETLPAMLRQKREEEAAHGLAFESRCAMRLMLR >gi|283548477|gb|GG730300.1| GENE 478 526924 - 528285 1574 453 aa, chain - ## HITS:1 COG:ECs5316 KEGG:ns NR:ns ## COG: ECs5316 COG0477 # Protein_GI_number: 15834570 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 820 92.0 0 MEKNNITLDPSSSFGTSSSADTNVPPEGMVQRSSRIKRIQTTAMILLFFAAVINYLDRSS LSVANLTIREELGLNATQIGVLLSVFSLAYGIAQLPCGPLLDRKGPRIMLGLGMFFWSLF QALSGMVHSFTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGLFNAASTIGVA VSPPILAAMMLVMGWRWMFITIGVLGIFLAIGWYMLYRNREQIALSATEQAYLNAGSVNA RRDPLSFAEWRSLFRNRTMWGMMLGFSGINYTAWLYLAWLPGYLQTSYNLDLKSTGLMAA IPFLFGAAGMLINGFVTDWLVKGGMAPIKSRKICIIAGMFCSAAFTFIVPQATTSMAAVL LIGMALFCIHFAGTSCWGLIHVAVASRMTASVGSIQNFASFICASFAPIVTGFIVDTTNS FRLALIICGCVTMVGALAYIFLVRQPISDPRKD >gi|283548477|gb|GG730300.1| GENE 479 528499 - 529413 918 304 aa, chain - ## HITS:1 COG:ECs5317 KEGG:ns NR:ns ## COG: ECs5317 COG1802 # Protein_GI_number: 15834571 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 37 304 1 268 268 468 89.0 1e-132 MSRSQNLRHNVINQIIDDMARGHIPSPLPSQSALAEMYNISRTTVRHMLSHLGECGVLTQ VGSHYVIVRKPDHDDGFACTTASMTEQNRIFEQAFFTMINQRQLRAGESFSELQLARAAG VSPVVVREYLLKFERYNLIKNEKRGQWSMKQFDQAYAEQLFELREMLETHSLQHFLNLPD DDPRWLQAKTLLERHRILRDSIGSSFRMFSQLDREFHALLLSAADNIFFNQSLEIISVIF HFHYQWDESDLKQRNIIAIDEHMTILSALICRSDLDATLALCNHLNSAKQSMIRSINQSS AAAH >gi|283548477|gb|GG730300.1| GENE 480 529551 - 530573 1164 340 aa, chain + ## HITS:1 COG:yjjN KEGG:ns NR:ns ## COG: yjjN COG1063 # Protein_GI_number: 16132179 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 340 6 345 345 627 90.0 1e-179 MSTMNTLICQEPKKLVWKEREIPIPGEDEALIKIKSVGICGTDIHAWGGNQPFFSYPRVL GHEICGEIVGLGKNIQNMKNGQQVAVIPYVACQQCPACLSGRTNCCEKISVIGVHQDGGF SEYLAVPVTNLLDAQGIDPQAAALIEPYAISAHAVRRAAVAPGEQVLVVGAGPIGLGAAA IAKADGAQVVVADTSPARREHVVSRLGLPVIDPSAEDFDAQLRARFGGSLAQKVIDATGN QHAMNNTVNLIRHGGSIVFVGLFKGDLQFSDPEFHKKETTMMGSRNATPEDFAKVGRLMS EGKLTADMMLTHRYAFAQLAEVYERDVINNRELIKGVITF >gi|283548477|gb|GG730300.1| GENE 481 530587 - 532032 1622 481 aa, chain + ## HITS:1 COG:ECs2128 KEGG:ns NR:ns ## COG: ECs2128 COG0246 # Protein_GI_number: 15831382 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 480 1 482 483 724 72.0 0 MKTLNRRDFPGVSYPTRVIQFGEGNFLRAFVDWQLDILNEKTDLNAGVTIVRPINTDFPP SLNTQDGLYTTLIRGLNEQGEAVSEARLIRSVNNEINPYQDFAAYLALAHNADIRFVFSN TTEAGISYHAADRVDDAPPVSFPAKLTRLLLERFNHFAGALDKGWVIIPCELIDYNGDAL KTLVLQYAQDWQLPAAFADWVETANTFCSTLVDRIVTGYPREEAAALEATLGYHDAFLDT AEHFYLFVIQGPTWLADELKLAQCPLNIRVVSDIRPYKERKVAILNGAHTALVPVAWLCG LETVGEAMQDADVRRFVERAIGEEIIPVLDLPADELREFAGAVSGRFQNPYIRHQLLSIA LNGMTKFRTRILPQLLAGQQNGCWPERLTFALAALLAFYRGERAGEGYPLQDDEQWINLY ASLWPRVGHDLTLRELVDTVLGDAAHWGDDLTMLPGLAEQVTANLEMILAQGMRQAVNGL R >gi|283548477|gb|GG730300.1| GENE 482 532182 - 534947 2618 921 aa, chain + ## HITS:1 COG:STM4534_1 KEGG:ns NR:ns ## COG: STM4534_1 COG1221 # Protein_GI_number: 16767778 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 460 1 460 460 831 87.0 0 MRKDVLLAFLTNQTDFFDPEHISEVFTARYLAQRFNMQRNTASHYLNQLVAQGILVKINT RPVYFLHKQAFAQQFFALPRNEYASVAELLAQGEEERQPGDHFSLLIGHNESLKKPIEQL KTALFYPDGGLPLLITGESGTGKSYIAQLMHEYAIAQELIAPDAPFITFNCAQYASNPEL LAANLFGYVKGAFTGALNDKAGAFEAAHGGMLFLDEVHRLNADGQEKLFTWLDRGEIYRV GETAQGHPVSVRLVFATTEELHSTFLTTFLRRIPIQVSLPDLQQRSRQEKEALILLFFWS EAKTLSATLTLKPRLLQILNQYVYRGNVGELKNAVKYAVATAWAKKPGRESVTVSLHDLP DAMLTALPSLNEPITEEEPVIVTPQSNLLWLLRARDETQGMIHDTQCLVLALYESVRCAK ESWETVQKRMGDEIETLFDRLIFSGDDRSHSQRLLLITSQVREEFWRLEKRFNMQLNGNC IYALSHYLIHRATLAPSRLNSEQVRQLDTFLAQKFPLLYSFCQQILDTLTQKLDLEPRRI DVLLLVLWLHKQGVTSQKQVTHAVILAHGYATASSIANVANRLLKNNVFESFDMPLDVTP EAIAQQVMRYLESHPLASGLMILVDMGSLKAIHQHFDRAISTPVTIVNNVSTSMALYVGE RILQGHFIEDIARDIAQDLPVEHQLYWPKNSKPKAILTTCATGIGVATNLCSLLQASIPE ALGIEVVACDYAMLANNKQQEPVFSRYDVLAIVGTLDPQIRSLPWISLDSLISGEGNQQL RTLFGALTTPEQVTEINNLILKNFSLRRVIESVTILDTGKVINHVEQFLLRYEHLAGQIV SNERKVALYVHISCLIERLIRHAGITAHSGHQCPEHELNMLREAFSVIESNYSVKIPGAE LCYIHNILTFDTEYIEQDQQF >gi|283548477|gb|GG730300.1| GENE 483 535049 - 535471 428 140 aa, chain + ## HITS:1 COG:STM4535 KEGG:ns NR:ns ## COG: STM4535 COG2893 # Protein_GI_number: 16767779 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 140 1 140 140 226 82.0 1e-59 MKRQYIFASHGTLASGVLNSVELILGKRDNVLTLCAYVEEGVDLSQQVDALMAQIPQDAE VIALTDIFAGSVNNEFVRYLSRDHFHLLAGINLPLVIDLFMSEEEGNAAQIISAALTNSK ENIQYCNQTITSAMHGDKDF >gi|283548477|gb|GG730300.1| GENE 484 535486 - 535947 463 153 aa, chain + ## HITS:1 COG:STM4536 KEGG:ns NR:ns ## COG: STM4536 COG3444 # Protein_GI_number: 16767780 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 153 1 153 153 265 90.0 3e-71 MIVFLRVDHRLLHGQVAFSWTQYVDADCILIANDSVPNDELRKTTIKMAKPPAVKLVIKN INDAIEAIKSGVTDKYKLFIVVESVTDAWRLARELPEIKSINLGGTKVREGSQNISKAIN LLAEEVAQLQELAAAGVEVEIRLVPNDRKQRFA >gi|283548477|gb|GG730300.1| GENE 485 535973 - 536752 902 259 aa, chain + ## HITS:1 COG:STM4537 KEGG:ns NR:ns ## COG: STM4537 COG3715 # Protein_GI_number: 16767781 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 259 1 259 259 407 96.0 1e-113 MVEALLLGLVAFIAQSEYALGTSLISRPIVTGLLTGLVLGDMETGIVMGATLELAFIGSF SVGASLPPDVVTGGILGVAFAINSGAGAETALLLGLPIATLALIVKNIYNGMFIPLLCHK ADAYAEVGNTRGIERMHLISGIGLSLTLGIIVTVSYLAGVNVVKGFLDAIPEFIKHGLSV ATGIIPALGFAMLARLLINKKVAPYFFLGFVLMAYLKIPVTGIAILGAIVAVVMVNMPKI NQSQTAPAQGAPHDDEDDF >gi|283548477|gb|GG730300.1| GENE 486 536730 - 537590 985 286 aa, chain + ## HITS:1 COG:STM4538 KEGG:ns NR:ns ## COG: STM4538 COG3716 # Protein_GI_number: 16767782 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 5 286 1 278 278 501 92.0 1e-142 MTMKMISEDERQQAETTGEVTGEVTARDLRRVFWRSFMMEFSWNYERQMNLAFAYTLIPV LKKLYTRKEDLAQALKRHLAFFNTTPHIVTLILGITVAMEEKNSQQKGMDATSIDNVKAS LMGPLAGIGDSFFWGTLRLIATGIGTSLALKGNILGPILFLLVFNVPHILVRWLFTRWGY VLGTGVLQRIQQSGMMESLTYGASIIGLMVVGAMTASMIDITIPTTFGTGEAKTHVQDII NDIMPCLLPLVSFAIVCWLLGKKVKPLTIIGGIALVGILGSWIGLF >gi|283548477|gb|GG730300.1| GENE 487 537603 - 538664 1064 353 aa, chain + ## HITS:1 COG:STM4539 KEGG:ns NR:ns ## COG: STM4539 COG0449 # Protein_GI_number: 16767783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Salmonella typhimurium LT2 # 1 353 1 353 353 500 76.0 1e-141 MSPTMLTYINEESATLARILREYRQTLADISDFAHHRKIERITILATGSSLNAAYCARYF FEKFAINIDIKEPYTFTHYEYLDPQVDMVIAISQSGKSASTLDAMRKVQAQGIPVFALTS DRQSPVGLACDYPLDILTGIEKVGFVTRGFSATVLNLLLIALLLARQQQRLDEREMADYL AQLERLAVGIPDAIARTETFIHTHQTVLQQGKRFVAIGYGALVGVAKEFETKFTETVRVP SAGFELEAYMHGPYLEANAEHVMFFFDDAGDERSGALRDYMSSAVERAFRVTLAAQAQDE NTLALGVNVDHFLSPLLLIVPVQLLAFHIASLKGIDLSVRIFDDFDRVLKSKI >gi|283548477|gb|GG730300.1| GENE 488 538683 - 539693 921 336 aa, chain + ## HITS:1 COG:STM4540 KEGG:ns NR:ns ## COG: STM4540 COG2222 # Protein_GI_number: 16767784 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Salmonella typhimurium LT2 # 1 336 8 343 343 628 89.0 1e-180 MLGFNQDEYLTSAREIVAARQKAEQVADDIHQSGFSSLFFASVGGSLAPMMAINEFAKEL TGLPVYIEQAAELIHKGNKRLNKDSVVVTLSKSGDTKESVAIAEWCKAQGMRVVAITKNA DSPLAQAATWHIPMRHKNGVEYEYMLLYWLFFRVLSRHGDFADYARFASQLETLPEHLLQ AKQIFDPQADQIARRFHCSDYMMWVGGAEMWGEVYLFSMCILEEMQWKRTRPVSSAEFFH GALELLEKEVPLLLVKGEGKCRALDERVERFAAQITDNLVVIDPAQYPMPGIDDAFRWIM APCLVSTLLVDRLAAHFEHYTGHSLDIRRYYRQFEY >gi|283548477|gb|GG730300.1| GENE 489 539721 - 542012 2328 763 aa, chain - ## HITS:1 COG:STM4541 KEGG:ns NR:ns ## COG: STM4541 COG1368 # Protein_GI_number: 16767785 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Salmonella typhimurium LT2 # 14 762 1 749 750 1425 92.0 0 MSELISITLFLASVLIYAWKAGRNTWWFAATLTVLGIFIVLNITLYASDYFTGDGINDAV LYTLTNSLTGAGIGKYILPGVGIALALTTVFVALGWILRRRRHHPHHVGYSLLALLLALA SVDASPAFHQITELVKSQSRDGDPDFSTYYKEPSKTIPNPKLNLVYIYGESLERTYFNND AFPDLTPELGALKNEGMDFSNTMQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFF PNNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGAEELKSVVADPAYRND WGFYDDTVLDEAWKKFEALSRSGQRFSLFTLTVDTHHPDGFISRSCNRKRYDIDGKANQS FSAVSCSQENIAEFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVLRG DQPQQETLAVKRNTMDNGATVLDILGGDNFIGLGRSSLSSESVSEVFLNIKEKMLAWKPD IIRLWNFPKEMKEFTIDQDKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLA DFAPRDNFVWVDRCYKMAQLWAPALALSTDWCVSQGQLGGQQIVQHVDKAKWKSKTVFKD TVIDMERYKGNVDTLKIVDNDIRYKADSFVFNVAGAPEEVKQFSGISRPESWGRWSNAQL SEEVKIEYKAPLPKKFDLVITAKAYGDNANRPIPVRVGNEEQTLVLSHDVSTTTLHFENP ADANTLVIVPPDPVATNEGNILGHSPRKLGIGMVEIKVVDAQG >gi|283548477|gb|GG730300.1| GENE 490 542244 - 542735 589 163 aa, chain - ## HITS:1 COG:no KEGG:SSON_4506 NR:ns ## KEGG: SSON_4506 # Name: yjjA # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 163 2 165 165 182 70.0 5e-45 MMKTTQRLLCCALAASTLISTSVFAASWQDSLSSAASELSKQSSGSQGSSSLSSLTSLLN GSNQSLTSSSMNNAAGILEYCAKQKLASVTDAQNVKNQVLDKLGLSAPEQKQDTNYMDGI QGLLNAKDGKQLDLNTIGNSSLAKQVKTKACDLVLKQGMNFIS >gi|283548477|gb|GG730300.1| GENE 491 542805 - 543542 901 245 aa, chain - ## HITS:1 COG:STM4543 KEGG:ns NR:ns ## COG: STM4543 COG1484 # Protein_GI_number: 16767787 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 455 94.0 1e-128 MKNVGDLMKRLQKMMPPHVEPAFKTGEELLAWQKEQGEIRAAALARENRAMKMQRTFNRS GIRPLHQNCSFDNYRVECEGQMNALSKARQYVDEFDGNIASFIFSGKPGTGKNHLAAAIC NELLLRGKSVLIITVADIMSAMKETFSNRETSEEQLLNDLSNVDLLVIDEIGMQTESRYE KVIINQIVDRRSSSKRPTGMLTNSNMDEMNKLLGERVMDRMRLGNSLWVIFNWDSYRSRV TGKEY >gi|283548477|gb|GG730300.1| GENE 492 543545 - 544084 379 179 aa, chain - ## HITS:1 COG:ECs1768 KEGG:ns NR:ns ## COG: ECs1768 COG5529 # Protein_GI_number: 15831022 # Func_class: R General function prediction only # Function: Pyocin large subunit # Organism: Escherichia coli O157:H7 # 78 169 184 281 346 81 48.0 6e-16 MPCKILTPDVISIDALLHDHHAVLAKSAGGAVAVFANNAPAFYALTPARLAQLLALEEKL SRPGSDVTLDAQFYEEPQAAPVAVPMGKFAMYADWQPDADFQRQAALWGVALREPVTAEE LASFVAYWQAEGKVFHHIQWQQKLARSIQIGRASNGGMPKRDVNSVSEPDSHIPPGFRG >gi|283548477|gb|GG730300.1| GENE 493 544208 - 544681 559 157 aa, chain - ## HITS:1 COG:STM4545 KEGG:ns NR:ns ## COG: STM4545 COG3610 # Protein_GI_number: 16767789 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 260 94.0 6e-70 MGVIDFILALMQDMILSAIPALGFAMVFNVPHRALPWCALLGALGHGSRMVMMSAGFNIE WSTFMASLLVGCIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKIGHFGYSEA LMITLLTNFLKASSIVGALSIGLSVPGLWLYRKRPRV >gi|283548477|gb|GG730300.1| GENE 494 544672 - 545481 292 269 aa, chain - ## HITS:1 COG:STM4546 KEGG:ns NR:ns ## COG: STM4546 COG2966 # Protein_GI_number: 16767790 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 2 268 36 302 303 480 89.0 1e-135 MQRDPFQSERAMQTEQSSQRTVTRLCIQCGLFLLQHGAESALVDELSTRLGLALGMDSVE SAISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHKLLDIKGVEKRFS QIKPLRYPRWLVALMVGLSCACFCKLNNGGWDGATITFFASMVAMYIRQILASRHLHPQI NFCITAFVATTISGLLLTLPTFHHTPTIAMAASVLLLVPGFPLINSVADMFKGHINTGLA RWAIASLLTLATCIGVVVSMTLWGLRGWA >gi|283548477|gb|GG730300.1| GENE 495 545904 - 546629 184 241 aa, chain + ## HITS:1 COG:STM4547 KEGG:ns NR:ns ## COG: STM4547 COG2197 # Protein_GI_number: 16767791 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 237 1 237 241 341 72.0 9e-94 MLPGRCKNAILISKLPIVQTGLKGVMQGRFADYGLTYCRSVEELTLLQLRCADLVIADLS GDCSHPRSVCEQYYSLLSQYRDIHWVFLVSRVFYPLAIELLMCPVSSLLSDAEPIESLVN VILAGNTRAERISKSLLSPPVMPEPADHSARSIVLTLSERKVLRLLGKGWGINQIATLLK KSNKTISAQKNSAMRRLSIHSNAEMYAWINSSQGSRELNLPSVYGEATEWKAEALKETSH L >gi|283548477|gb|GG730300.1| GENE 496 546590 - 547267 277 225 aa, chain + ## HITS:1 COG:STM4548 KEGG:ns NR:ns ## COG: STM4548 COG2197 # Protein_GI_number: 16767792 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 216 1 216 224 310 75.0 1e-84 MESRSIKRNVALVEKCAMSSVGIKSLFNTMPDNQYKLHLFSNQPDFSQAMLKMPFSAVIF SLSAIRTDRRAGLAHLTELAIHFPRIRRVVIADDDAEARLIGSLSPLPLDGVVSKSSSLT VLQEALFTALNCSSRGTEGSKNHWYINQSRMLSPTEREILRFMSNGYSMPQIAVQLERNI KTIRAHKFNVMSKLGVSSDAGLLDAADILLYLRAGDPAPFLQAAS >gi|283548477|gb|GG730300.1| GENE 497 547325 - 547783 268 152 aa, chain - ## HITS:1 COG:STM4549 KEGG:ns NR:ns ## COG: STM4549 COG2606 # Protein_GI_number: 16767793 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 152 1 152 152 268 91.0 2e-72 MSLQSVRQFLAQHAPDIEIIELDQSTATVDLAAKAHNVEPGQIAKTLSLKVKNDIILVVA KGDARLDNKKLKSTFGAKARMLSSDEVVNATGHPVGGVCPFGLETPISVYCDVSLKHYAE VLPAAGAIHSAVRITPERMAELTSATWVDVCQ >gi|283548477|gb|GG730300.1| GENE 498 548149 - 549492 1449 447 aa, chain + ## HITS:1 COG:VC1282 KEGG:ns NR:ns ## COG: VC1282 COG1455 # Protein_GI_number: 15641295 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Vibrio cholerae # 7 440 6 435 446 425 51.0 1e-118 MSTNHAVFNVIFRFVENYVSPVAGRISSQRHVMAIRDGFISAMPFMIVGSFLLVFAYPPF SPDTTWGFARAWLDMAKQFEGQILTPFDMTMGIMSVYICAAIAYNLGKHYVKSHQLDPFM CAMLSIMAFLLIAAPKTKGAMPVDSLGGTGIFTAILVAIYCVEMMRFLKAHNIGIRLPDQ VPPMIKNSFDLLIPVLVVVLTLYPLSLVIQSQFDMLIPQAIMAIFKPLVSAADSLPAILL AVLIGHLLWFAGIHGAAIVSGMLQMFWLTNLGMNQSALAQGAPLPHIFMEAFWTFFIVVG GSGATMGLVICYLRSRSAHLRSIGRLSVVPSIFNINEPVIFGTPIVMNPVFFIPFLLAPM VNAVLAWAAMKLDLIGRVISVVPWTAPAPVGAAWALGWDYRAAILVVLLALVSAIIYFPF FKVYEKQLLAQEKEEAQRIEEENQQVA >gi|283548477|gb|GG730300.1| GENE 499 549522 - 550310 518 262 aa, chain - ## HITS:1 COG:STM4550 KEGG:ns NR:ns ## COG: STM4550 COG4114 # Protein_GI_number: 16767794 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S protein # Organism: Salmonella typhimurium LT2 # 1 262 1 262 262 413 78.0 1e-115 MAYRSAPLVEDVIWRSHLPAKMPSLAAAVRETIAKTREHLLDFIRLDETPVPGAMTLHEW TQPATLRSLLAVYADHIYRNQPTLPREHKPLISLWAQWYIGLMMPPLMVALLTQKEAIDV SPEHMRVEFHETGRAACFWIDVHQDHQTTALSPQQRMETLILSALTPVVQALEATGEINA KLIWSNTGYLIHWYLTEMKPLLGEELLNTLRQTCFFEKQLSCGQANPLWRTVVPREGLLV RRTCCQRYRLPDVQQCGDCTLK >gi|283548477|gb|GG730300.1| GENE 500 550419 - 551495 869 358 aa, chain - ## HITS:1 COG:STM4551 KEGG:ns NR:ns ## COG: STM4551 COG2199 # Protein_GI_number: 16767795 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Salmonella typhimurium LT2 # 1 351 1 351 354 531 76.0 1e-151 MTVQSWRALRTKKYQLSLRLFLLLNAVSALFTLFFPLFAVKALSVPALLILIASALLLIW HGKYADKKINLPFISIVFGVLWAFHIFQKYSTLGHNDYYFLLIALLSVLFIGSIAFANNI IAFTLHSLPSVGVCLWLNGSEHSLRIFYFMALPMAGIAIQHVIQKRYDGFAQQLMYKLLE ERETLNGLSMLDPLTGLYNRRGLQHRLDTLLALSNSKHYVLLLDIDHFKAYNDHYGHMMG DQALIRVSAAIRDSVRSRDVVARFGGEEFMVLLTAIDPQQAQAAAERIRQKVYDLKIPHM FNESVATNVTVSIGIAPLVEQDIEAAIARADKALYEAKNLGRNNTLVSEELWVNRPSL >gi|283548477|gb|GG730300.1| GENE 501 551712 - 551987 283 91 aa, chain + ## HITS:1 COG:no KEGG:ROD_48711 NR:ns ## KEGG: ROD_48711 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 91 10 100 100 107 73.0 2e-22 MILVIIISAIGGTMLQRTLGSGWGVLLPGILIAGMAFTDLSVYVWKAMIVLGLLLTSLML YHKRLRHFILLPSCAALIGGIMLVMMNWNQG >gi|283548477|gb|GG730300.1| GENE 502 552567 - 553598 271 343 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 78 333 106 367 371 108 30 4e-22 MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPAHFDSAASRAHTQQLHHWQVLNRQMG DNVRFSLVAQADDVADSDTLIYYWPKNKPEAQFQLMNILSLLPVGTDVFVVGENRSGVRS AEQMLAEYAPLNKIDSARRCGLYHGRLEKQPVFDAEKYWDEYQTENLTIKTLPGVFSRDG LDVGSQLLLSTLSPHTKGKVLDVGCGAGVLSVALASHSPKVRLTLCDVSAAAVEASRATL AANGVEGNVIASNVFSDVTGRFDMIISNPPFHDGLQTSLDAAQTLIRGAVRHLNSGGELR IVANAFLPYPKVLDEVFGFHEVIAQTGRFKVYRTVMTRQAKKA >gi|283548477|gb|GG730300.1| GENE 503 553702 - 554115 429 137 aa, chain + ## HITS:1 COG:ECs5330 KEGG:ns NR:ns ## COG: ECs5330 COG3050 # Protein_GI_number: 15834584 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, psi subunit # Organism: Escherichia coli O157:H7 # 1 137 1 137 137 226 85.0 8e-60 MTSRRDWQLQQLGFTQWSLRRPGALQGEIAISIPAHIRLVMVAAQLPALSEPLMSDILRA LTVSPDQVLQLTPDRVAMLPQGSRCNSWRLGTEEPLQLEGAQVASPAFDELRANPAARAA FWQQICAYEHDFFPRTD >gi|283548477|gb|GG730300.1| GENE 504 554027 - 554530 663 167 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15804944|ref|NP_290986.1| ribosomal-protein-alanine N-acetyltransferase [Escherichia coli O157:H7 EDL933] # 20 167 1 148 148 259 87 1e-67 MNYGQTLRHAPRFGNKSAHMNTISSLEPTDLPAAFQIEKRAHAFPWSEKTFASNQGDRYL NFQLRVDDVMGAFAITQVVLDEATLFNIAVDPDFQRRGLGRELLEHLIDELEKRGILTLW LEVRASNAAAIALYESLGFNEATIRRNYYPTADGHEDAIIMALPISM >gi|283548477|gb|GG730300.1| GENE 505 554545 - 555225 666 226 aa, chain + ## HITS:1 COG:STM4559 KEGG:ns NR:ns ## COG: STM4559 COG1011 # Protein_GI_number: 16767800 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Salmonella typhimurium LT2 # 1 226 1 226 226 439 92.0 1e-123 MKKWDWIFFDADETLFTFDSFTGLQRMFLDYSITFTAEDFQDYQAVNKPLWVDYQNGAIT SLQLQHARFQSWAERLKVEPGQLNDAFINAMAEICSPLPGAVSLLNAIRNKTKIGIITNG FTALQQIRLERTGLRDYFDLLVISEQVGVAKPDPRIFDHALAQAGNPDRSRVLMVGDTAE SDILGGINAGLSTCWLNTHHREQPAGIQPTWTVASLSELEQLLCKH >gi|283548477|gb|GG730300.1| GENE 506 555318 - 556907 1940 529 aa, chain + ## HITS:1 COG:STM4560 KEGG:ns NR:ns ## COG: STM4560 COG4108 # Protein_GI_number: 16767801 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Salmonella typhimurium LT2 # 1 529 1 529 529 1065 97.0 0 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSSQHAKSDWM EMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE DRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFK GVYHLYKDETYLYQTGKGHTIQEVRIVKGLNNPELDAAVGEDLAQQLRDELELVQGASNE FDHDLFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRKTDTRTVEASEEKFTGFV FKIQANMDPKHRDRVAFMRVVSGKYEKGMKMRQVRIGKDVVISDALTFMAGDRSHVEEAY PGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLS EEGAVQVFRPIANNDLIVGAVGVLQFDVVVSRLKSEYNVEAIYESVNVATARWVECSDVK KFEEFKRKNEVQLALDGGDNLTYIAPTMVNLNLTQERYPDVQFRKTREH >gi|283548477|gb|GG730300.1| GENE 507 557215 - 557832 752 205 aa, chain + ## HITS:1 COG:STM4561 KEGG:ns NR:ns ## COG: STM4561 COG2823 # Protein_GI_number: 16767802 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Salmonella typhimurium LT2 # 1 205 1 205 205 236 91.0 3e-62 MTMTGLKISKTLLAVMLTSAVATGSAFAENATTDKAQSGVESAGQKVDSSMNKVGNFMDD STITAKVKAALVDHDSIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVS DKLHVRDSKSTSVKGYAGDTATTSEVKAKLLADDIVPSRKVKVETTDGVVQLSGTVDSKA QSDRAESIAKAVDGVKSVKNDLKTQ >gi|283548477|gb|GG730300.1| GENE 508 557960 - 558121 194 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|157147615|ref|YP_001454934.1| ## NR: gi|157147615|ref|YP_001454934.1| hypothetical protein CKO_03415 [Citrobacter koseri ATCC BAA-895] hypothetical protein CKO_03415 [Citrobacter koseri ATCC BAA-895] # 1 53 21 73 73 70 92.0 5e-11 MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFTGRKRP >gi|283548477|gb|GG730300.1| GENE 509 558242 - 559315 1030 357 aa, chain + ## HITS:1 COG:STM4563 KEGG:ns NR:ns ## COG: STM4563 COG4667 # Protein_GI_number: 16767804 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Salmonella typhimurium LT2 # 1 357 1 357 357 635 85.0 0 MGQRIPVTLGNIAPLSLRPFQPGSVALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYYGT SAGAQNLSAYLCNQPGYGRKVIMRYTTRREFFDPVRFVRGGNLIDLDWLVASTASQMPLA MDNAERLFAAGKAFYMCACRGDDYTPGYFSPNRQNWLDLIRASSAIPGFYRSGVALDGVN YLDGGVSDAIPVQEAAKHGAKTLVVIRTVPSQMYYTPQWFKRMERWLGESSLQPLLNLVQ HHEASYRAIQSFIEKPPGKLRIFEIYPPKPLHSMALGSRIPALREDYKTGRLCGRYFLAT VGKLLAKNAPLPRQTPKIVVPGPVVVPPAPVANEAHAPVVTNALQANDTTFDNEDLA >gi|283548477|gb|GG730300.1| GENE 510 559312 - 560088 674 258 aa, chain + ## HITS:1 COG:yjjVm KEGG:ns NR:ns ## COG: yjjVm COG0084 # Protein_GI_number: 16132266 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Escherichia coli K12 # 1 258 1 258 259 408 79.0 1e-114 MSYRFIDTHCHFDFPPFTDDEPASIQRAAAVGVHSIIVPATQAANFSRVLALAENYPPLF AALGLHPIVIEQHGEDCLDQLQQALEKRPHKLVAVGEIGLDLYRDDPQFDKQERVLDAQL KLAKRYDLPVILHSRRTHDKLAMHLKRHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGG TITYPRASKTREVMAQLSLESLLLETDAPDMPLNGFQGQPNRPEQVVRVFETLCELRQEP ADVIADALYRNTTALFNV >gi|283548477|gb|GG730300.1| GENE 511 560570 - 561304 688 244 aa, chain - ## HITS:1 COG:STM4565 KEGG:ns NR:ns ## COG: STM4565 COG1180 # Protein_GI_number: 16767806 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Salmonella typhimurium LT2 # 1 244 44 287 287 405 79.0 1e-113 MGRCNDCGECVLHCPHEALSLSAGKVWWQSDICQQCDTCLHMCPQQATPMAQTLSVEEVL EHIRNAAPFIEGITVSGGEATTQLPFIVALFTALKSDPLLQHLTCMVDSNGMLSETGWQK LLPVCDGVMLDLKAWDSACHLQLTGRDNTLIKRSITFLADQGKLAELRLLVIPGQVDYLQ HIDALAAFIKRSGDVPVRLNAFHAHGVYGEPKDWPGATPEDVEQLAQGLRERGVGNVIFP ALYL >gi|283548477|gb|GG730300.1| GENE 512 561405 - 562955 1203 516 aa, chain - ## HITS:1 COG:no KEGG:CKO_03411 NR:ns ## KEGG: CKO_03411 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 514 38 551 565 1004 93.0 0 MPTSSEFALHQRCQQIVTSPTLSPEQKRHFLALEAENALPYPQLPAEARQALDDGVICDM YEGHAPFKPRYVLPDYARFLANGSSWLELEGARDLDDALSLLTILYHHVPSVTSMPVYLG QLDALLQPYVRILTQEEIDIRIKRFWRYLDRTLPDAFMHANIGPADTPVTRAILRADAEL KQVSPNLTFIYDPQITPDDLLLNVAQNICECSKPHISNGPENDKIFTKGHYGVVSCYNSL PLAGGGSTLVRLNLKAIAERSTSVDDFFTRTLPHYCQQQIAIIDSRCEFLYEKSHFFENS FLVQEGLIDPERFVPMFGMYGLAEAVNLLCEKAGQNARYGKDAFANQLGYRISAQLAEFV ERTPVKYGWKQRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAFYHAGIS DILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAAG SRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSK >gi|283548477|gb|GG730300.1| GENE 513 563217 - 563996 1043 259 aa, chain + ## HITS:1 COG:STM4567 KEGG:ns NR:ns ## COG: STM4567 COG0274 # Protein_GI_number: 16767808 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Salmonella typhimurium LT2 # 1 259 7 265 265 446 97.0 1e-125 MTDLTASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTL KEQGTPDIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALIAGNEQIGFD LVKACKDACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPE SARIMMEVIRDMGVSKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSL LASLLKALGHGDGKSASSY >gi|283548477|gb|GG730300.1| GENE 514 564145 - 565467 1719 440 aa, chain + ## HITS:1 COG:STM4568 KEGG:ns NR:ns ## COG: STM4568 COG0213 # Protein_GI_number: 16767809 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Salmonella typhimurium LT2 # 1 440 1 440 440 788 96.0 0 MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLT MAMRDSGTVLDWKSLQLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHT GGTLDKLEAIPGFDIFPDDARFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSI PLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLT DMNQVLASSAGNAVEVREAVQFLTGEYRNPRLLDVTMALCVEMLISGKLAKDDAEARAKL QAVLDNGKAAEIFGRMVAAQKGPTDFVENYAKYLPTAMLSKAVYADTEGFVSAMDTRALG MAVVSMGGGRRQASDTIDYSVGFSDMARLGDSVDGQRPLAVIHAKDEASWQEAAKAVKAA ISLDDKAPEITPTVYRRITE >gi|283548477|gb|GG730300.1| GENE 515 565519 - 566742 1639 407 aa, chain + ## HITS:1 COG:STM4569 KEGG:ns NR:ns ## COG: STM4569 COG1015 # Protein_GI_number: 16767810 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Salmonella typhimurium LT2 # 1 407 1 407 407 829 98.0 0 MKRAFIMVLDSFGIGATEDADRFGDVGSDTMGHIAEACAKGEADNGRKGPLNLPNLTRLG LVKAHEGSTGKIAAGMDGNAEVVGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDH ENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIAC HEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAP TVLQKLVDEKDGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDKTIVFT NFVDFDSSWGHRRDIAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPSWTGTDHT REHIPVLIYGPKVKPGSLGHRETFADIGQTLASYFGTSPMDYGKNML >gi|283548477|gb|GG730300.1| GENE 516 566854 - 567573 1018 239 aa, chain + ## HITS:1 COG:STM4570 KEGG:ns NR:ns ## COG: STM4570 COG0813 # Protein_GI_number: 16767811 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Salmonella typhimurium LT2 # 1 239 1 239 239 463 99.0 1e-130 MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDIREVNNVRGMLGFTGTYKGRKISV MGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVRMDVKLRDVVIGMGACTDSKVNRIR FKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLFYSPDGEMFDVMEKYGVLGVE MEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE >gi|283548477|gb|GG730300.1| GENE 517 567668 - 568684 1145 338 aa, chain - ## HITS:1 COG:lplA KEGG:ns NR:ns ## COG: lplA COG0095 # Protein_GI_number: 16132203 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Escherichia coli K12 # 1 338 1 338 338 673 94.0 0 MTTLRLFISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRR MEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTAIVLNALNSLGVIADASG RNDLVVKTPDGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITS VRSRVANLTELLPGITHEQVCQAVTEAFFAHYGERVEAEAISPDKTPNLPNFAETFARQS SWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQG CLYRADMLQQECEALLVDFPEQEKELRELSAWISKAVR >gi|283548477|gb|GG730300.1| GENE 518 568700 - 569335 695 211 aa, chain - ## HITS:1 COG:ECs5345_1 KEGG:ns NR:ns ## COG: ECs5345_1 COG3726 # Protein_GI_number: 15834599 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein affecting hemolysin expression # Organism: Escherichia coli O157:H7 # 1 204 1 204 224 333 91.0 1e-91 MARTKLKFRLHRAVIVLSCLALLVALMQGASWFSQSHQQQRNPQLEELARTLARQVALNV APLMHTETPDEKRIKAVLTQLTESSRILDAGVYDEQGDLITRTGESVNVRDRLALDGKKA GGYFNQQIVEPIHGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLT RTLLQGKRTRWQQSPFLLTANKPVQEEDKDD >gi|283548477|gb|GG730300.1| GENE 519 569398 - 570420 1149 340 aa, chain + ## HITS:1 COG:ECs5346 KEGG:ns NR:ns ## COG: ECs5346 COG0560 # Protein_GI_number: 15834600 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Escherichia coli O157:H7 # 19 340 1 322 322 622 95.0 1e-178 MRYFPLDDSDPNDFTGALMPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLL YGRGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTPRATKLAHDARLDVAPLG KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRV ATLKGADANILHQVRETLPLMPGLTQLVLKLETLGWKVAIASGGFTFFADYLRNKLRLTA AVANELEIMDGKFTGNVIGDIVDAQYKANTLTRLAQEYEIPLAQTVAIGDGANDLPMIKT AGLGIAYHAKPKVNEKTEITIRHADLMGVFCILSGSMNQK >gi|283548477|gb|GG730300.1| GENE 520 570504 - 571886 1512 460 aa, chain + ## HITS:1 COG:ECs5347 KEGG:ns NR:ns ## COG: ECs5347 COG1066 # Protein_GI_number: 15834601 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Escherichia coli O157:H7 # 1 460 1 460 460 890 98.0 0 MAKAPKRAFVCNECGADYPRWQGQCSACQAWNTITEVRLAASPTVARNERLSGYAGNAGV AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA EQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQ VMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA KHGFRRAIVPAANVPKKVPEGMQVFGVKKLADALSVFDDL >gi|283548477|gb|GG730300.1| GENE 521 572027 - 573259 1393 410 aa, chain + ## HITS:1 COG:STM4580_3 KEGG:ns NR:ns ## COG: STM4580_3 COG3172 # Protein_GI_number: 16767821 # Func_class: H Coenzyme transport and metabolism # Function: Predicted ATPase/kinase involved in NAD metabolism # Organism: Salmonella typhimurium LT2 # 226 409 1 184 185 372 96.0 1e-102 MSSFDYLKTAIKQKGCTLQQVADASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFP RQQKNIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRSLFEDSAMSQQPTV PDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKTFMQEKGIQPNWIYTSEE SDAPQYLEHLGIETVLVDPKRTFMSISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGE SSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGQAQYIDFAVK YANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLG SSVDRKAFQSLLVEMLQENNIDFVHVQEPDYDGRFLRCVELVKELMGEQR >gi|283548477|gb|GG730300.1| GENE 522 573359 - 575026 2126 555 aa, chain - ## HITS:1 COG:ECs5349 KEGG:ns NR:ns ## COG: ECs5349 COG0488 # Protein_GI_number: 15834603 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 555 1 555 555 1072 96.0 0 MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIE GEARPQPGIKIGYLPQEPKLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDK LAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIENLSGGERRRVALCRLLLEK PDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPW EGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNT EYQKRNETNELFIPPGPRLSDKVVEVSNLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGA GKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNT EMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETL RALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGA DALEPKRIKYKRIAK >gi|283548477|gb|GG730300.1| GENE 523 575234 - 577171 1985 645 aa, chain + ## HITS:1 COG:ECs5350 KEGG:ns NR:ns ## COG: ECs5350 COG0741 # Protein_GI_number: 15834604 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Escherichia coli O157:H7 # 1 645 10 654 654 1170 92.0 0 MDKAKQFTWRLLAASVCLLTVSQVARADSLDEQRNRYAQIKQAWDNRQMDVVEQMMPGLK NYPLYPYLEYRQITDDLMNQPTITVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLA FSPGKPGTTEAQCNYYFAKWSTGQTEEAWQGAKELWLTGKSQPNACDKLFGVWRASGTQD PLAYLERIRLAMKAGNTGLVTALAGQMPAQYQAIASSIIALANDPNTVMTFARTTGATDF TRQMAAVAFASVARQDVENARLMIPSLVQAQQLNDEQTQELRDIVAWRLMGNDVTDEQAK WRDDAIMRSNSTSLVERRVRMALGTGDRRGLNTWLARLPMDAKEKDEWRYWQADLLLERG RDAEAKEILHQLMQQRGFYPMVAAQRLGEEYELKVDKAPANVDSALTQGPEMARVRELMY WNLDNTARSEWANLVTSRTKSEQAQLARYAFNNHWWDLSVQATIAGKLWDHLEERFPLAY KDLFTRYTSGKDIPPSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPG YSSPSQLLDPDTNINIGTSYLQYVYQQFGNNRIFASAAYNAGPGRVRTWLGNSAGRIDAV AFVESIPFSETRGYVKNVLAYDAYYRYFLGDKPELMSDAEWQRRY >gi|283548477|gb|GG730300.1| GENE 524 577260 - 577586 347 108 aa, chain + ## HITS:1 COG:ECs5351 KEGG:ns NR:ns ## COG: ECs5351 COG2973 # Protein_GI_number: 15834605 # Func_class: K Transcription # Function: Trp operon repressor # Organism: Escherichia coli O157:H7 # 1 107 1 107 108 153 90.0 9e-38 MTQQSPYSAEMAEQRHQEWLRFVDLLKHAYEQDLHLPLLNLMLTPDEREALGTRVRIIEE LLRGEMSQRELKNELGAGIATITRGSNSLKSAPVDLRHWLEQVLLKSA >gi|283548477|gb|GG730300.1| GENE 525 577688 - 578203 555 171 aa, chain - ## HITS:1 COG:STM4584 KEGG:ns NR:ns ## COG: STM4584 COG1986 # Protein_GI_number: 16767825 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 171 1 171 171 325 96.0 2e-89 MHKVISATTNPAKIQAILQAFEEIFGEGSCHIEPVAVESGVPEQPFGSQETRTGARNRVD NARRLHPQADFWVAIEAGIDDDATFSWVVIDNGVQRGEARSATLPLPAVILDRVRQGEAL GPVMSQYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYR >gi|283548477|gb|GG730300.1| GENE 526 578255 - 578902 655 215 aa, chain + ## HITS:1 COG:ECs5353 KEGG:ns NR:ns ## COG: ECs5353 COG0406 # Protein_GI_number: 15834607 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Escherichia coli O157:H7 # 1 215 1 215 215 386 93.0 1e-107 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVGERARSLGITHVISSDLGRTR RTAEIIAQACGCDITYDSRLRELNMGVLEKRHIDTLTPEEEGWRRQLVNGTVDGRIPEGE SMQELSDRVNAALAACLDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSIS RVDYQESLWLAPGWVVETAGDISHLDAPALDELQR >gi|283548477|gb|GG730300.1| GENE 527 578899 - 579768 830 289 aa, chain - ## HITS:1 COG:STM4586 KEGG:ns NR:ns ## COG: STM4586 COG2207 # Protein_GI_number: 16767827 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 289 1 289 289 553 91.0 1e-157 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSQTPALYRRSPEWSAYGIRPPMRL GEFAMPAHEFVTLEDTQLLGTTQSYSCSLEQISDFRHEMRIQFWHDFLGHAPSIPPVLYG LNESRPSIEKDDEQEVFYTTALTPEQANGYVPAAQPILLQGGEYVMFTYEGLGTGVQEFI LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEFLIPIRR >gi|283548477|gb|GG730300.1| GENE 528 579980 - 580453 487 157 aa, chain + ## HITS:1 COG:ECs5355 KEGG:ns NR:ns ## COG: ECs5355 COG3045 # Protein_GI_number: 15834609 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 157 1 157 157 273 90.0 1e-73 MKYKSLVISSILLMLAQVAHAEQIGSVDTVFKMFGPDHKIVVEAFDDPDVTNVTCYVSRA KTGGIKGGLGLAEDTSDAAISCQQVGPVELSDRIKNGKAQGEVVFKKRTSLVFKSLQVVR FYDAKRNALAYLAYSDKVVDGSPKNAISAVPIMPWRQ >gi|283548477|gb|GG730300.1| GENE 529 580466 - 581155 548 229 aa, chain + ## HITS:1 COG:ECs5356 KEGG:ns NR:ns ## COG: ECs5356 COG0745 # Protein_GI_number: 15834610 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 229 1 229 229 387 83.0 1e-108 MQQPLIWLVEDEQGIADTLVYMLQQEGFSVEAFERGLPVLEKARQRCPDAIILDVGLPDI SGFELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR RVQKFASPASTTRCGDFELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLM DLVWADAQDTFDRTVDTHIKTLRAKLRAINPEISPINTHRGMGYSLRSV >gi|283548477|gb|GG730300.1| GENE 530 581155 - 582579 1447 474 aa, chain + ## HITS:1 COG:creC KEGG:ns NR:ns ## COG: creC COG0642 # Protein_GI_number: 16132216 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli K12 # 1 474 1 474 474 771 83.0 0 MRIGMRLLLGYFLIVAVAAWFVLSIFVQEIKPGVRRATEGTLIDTATLLAALARDDLLSD APANGKLAQAFAQLHNRPFRANISGINKVRNEYHVYMTDAQGKVLFDSDNKAVGQDYSRW NDVWLTLRGQYGARSTLQNPNDPESSVMYVAAPIVDGGRIIGVLSVGKPNAAMAPVIKRS ERRMLWASAVLLGIALVIGAGMVWWINRSIARLARYADSVTENRPVALPDLGSSELRKLA QALESMRLKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPPNVVARFTDNILTQ NARMQALVETLLRQARLENRQDITLAPVAVDALFAQLKEARSVQLAAKNITLAITPSSLS VAADPALLEQAMGNLLDNAIDFTPPGGTIALSAHQQEDRVTLQVVDSGSGIPDFALPRIF ERFYSLPRENGLKSSGLGLAFVSEVARLHEGSVTLRNRPEGGAQALFTLHRHFT >gi|283548477|gb|GG730300.1| GENE 531 582637 - 584004 1230 455 aa, chain + ## HITS:1 COG:STM4590 KEGG:ns NR:ns ## COG: STM4590 COG4452 # Protein_GI_number: 16767831 # Func_class: V Defense mechanisms # Function: Inner membrane protein involved in colicin E2 resistance # Organism: Salmonella typhimurium LT2 # 1 455 1 449 449 668 75.0 0 MLKSPLFWKIVTLGGAMLLLLIPLTMVRQIIVERSDYRNDVEDAIRQSTSGPQKMVGPLI AIPVTELYTELEEGKEVQHKRSYIHFWLPESLVVEGNQNVEARKIGIYEGQVWHNDLAMK VEFNAERLSDLNHPNISIGKPFIVVGVGDARGIGVVNAPQVNGTSLVVEPGTGLDGRAQG IHIPLPDASWAKQNLSLALSLNLSGTGDFSVVPVGRNSEMTLTSNWPHPNFLGDFLPAKR EISKSGFTAQWQSSWFANNLGDRFDDEKIAWEGMPAFSVAVATPADQYQLTDRATKYAIL LIVLTFMSFFVLESMTSLRLHPMQYLLMGLSLVMFYLLLLALSEHIGFTAAWITASLVGA LMNGVYLQAVLQGWRNSILFTVALLVLDGVMWVLLRSQDSSLLLGTSVLLFALCGVMFLT RHLDWHSLAQPKPKPKPTERPEPPSAKSDEFRLWK >gi|283548477|gb|GG730300.1| GENE 532 584075 - 584791 853 238 aa, chain - ## HITS:1 COG:STM4598 KEGG:ns NR:ns ## COG: STM4598 COG0745 # Protein_GI_number: 16767839 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 238 1 238 238 472 100.0 1e-133 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLQD >gi|283548477|gb|GG730300.1| GENE 533 585426 - 586112 485 228 aa, chain + ## HITS:1 COG:lasT KEGG:ns NR:ns ## COG: lasT COG0565 # Protein_GI_number: 16132220 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylase # Organism: Escherichia coli K12 # 1 228 1 228 228 381 86.0 1e-106 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINV FPTLAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLT NEELALADVLTGVTMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNIDVTDELQLQALRAR VLRLLATLNVSDDIKLTDWLQQRMGLLGQRDTAMLHRFLHDIEKNITK >gi|283548477|gb|GG730300.1| GENE 534 586252 - 586497 64 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYRRTSTLAWFTSLPLVEKKSPHCLGAGFFLCFLYASARTVTCGNGDGCGNSDADAFHDV VCSVIIICLCCILLGLKYLLT >gi|283548477|gb|GG730300.1| GENE 535 586470 - 588932 2854 820 aa, chain + ## HITS:1 COG:STM0002_1 KEGG:ns NR:ns ## COG: STM0002_1 COG0527 # Protein_GI_number: 16763392 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Salmonella typhimurium LT2 # 1 460 1 460 460 885 96.0 0 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTIGGQDA LANISDAERIFSELLVGLAAAQPGFPLAPLKAFVEQEFAQIKHVLHGISLLGQCPDSINA ALICRGEKMSIAIMAGLLEARGHRVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASSD DDDLPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRAGISVVLITQSSSEYSISF CVPQGDCVRAQRAMQDEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL LEQLKRQQTWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQSELESAKEPFNLGRLIRL VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRFAAAKSR RKFLYDTNVGAGLPVIENLQNLLSAGDELQRFSGILSGSLSFIFGKLDEGMSFSQATIMA RELGYTEPDPRDDLSGTDVARKLLILARETGRELELSDIVIEPVLPKAFDDSGDVAAFMA KLSQLDDAFAARVAKARDEGKVLRYVGNIEEDGVCRVKIAEVDGNDPLFKVKNGENALAF YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV >gi|283548477|gb|GG730300.1| GENE 536 588934 - 589863 867 309 aa, chain + ## HITS:1 COG:ECs0003 KEGG:ns NR:ns ## COG: ECs0003 COG0083 # Protein_GI_number: 15829257 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Escherichia coli O157:H7 # 1 308 1 308 310 608 94.0 1e-174 MVRVYAPASSANMSVGFDVLGAAVTPVDGSLLGDVVSVEPADQFSLSNLGRFADKLPSEP RENIVYQCWERFCQELGKTVPVAMTLEKNMPIGSGLGSSACSVVAALVAMNEHCGKPLND TRLLAIMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGIISQQVPGFDEWLWVLAYPGI KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPLLAAKLMKDVIAEPYRTRLLP GFSQARQAVAEIGALASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRL DTAGARVLG >gi|283548477|gb|GG730300.1| GENE 537 589867 - 591153 1583 428 aa, chain + ## HITS:1 COG:STM0004 KEGG:ns NR:ns ## COG: STM0004 COG0498 # Protein_GI_number: 16763394 # Func_class: E Amino acid transport and metabolism # Function: Threonine synthase # Organism: Salmonella typhimurium LT2 # 1 427 1 427 428 783 92.0 0 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFNLTEVDEMLRQDFVSRSAKILS AFIGDEIPQEILEERVRAAFAFPAPVAQIAGDVGCLELFHGPTLAFKDFGGRFMAQMLTH ISGDKPVTILTATSGDTGAAVAHAFYGLPNVRVVILYPNGKISPLQEKLFCTLGGNIETV AVDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQEARNQ LVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLAEGEWAPKATQATLSNA MDVSQPNNWPRVEELFRRKIWRLNELGYAAVDDATTQDTMRELHEMGYTSEPHAAVAYRA LRDQLKPGEYGLFLGTAHPAKFKESVEEILDLTLALPKELAERADLPLLSHHLPADFSAL RKLMMTRG >gi|283548477|gb|GG730300.1| GENE 538 591218 - 591991 878 257 aa, chain - ## HITS:1 COG:ECs0006 KEGG:ns NR:ns ## COG: ECs0006 COG3022 # Protein_GI_number: 15829260 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 257 1 257 258 457 87.0 1e-128 MLILISPAKTLDYQSPLVTARHTLPELLDHSQQLIHVARQLSAPQIGKLMGISDKLADLN ATRFHDWQPDFTPDNARQAILAFKGDVYTGLQAETFSEADFDFAQRHLRMLSGLYGVLRP LDLMQPYRLEMGIRLANAKGKDLYQFWGDTITDKLNEALEAQGDNVVINLASDEYFKSVK PKKLNAELIKPVFLDEKNGKFKVISFYAKKARGLMSRYIIENRLTQPEQLTAFNSEGYFF DEEASGNGELVFKRHEQ >gi|283548477|gb|GG730300.1| GENE 539 592069 - 593505 765 478 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145634045|ref|ZP_01789756.1| 50S ribosomal protein L21 [Haemophilus influenzae PittAA] # 1 449 1 446 456 299 38 2e-79 MLMPDFFAFINEILWGSVMVYLLLAAGCWFTWRTGFVQFRYIRQFGKSLKNSISPQPGGL TSFQALCTSLAARIGSGNLAGVALAIAAGGAGAVFWMWVSAVIGMATSFAECSLAQLYKE RDSKGQFRGGPAWYMARGLGMRWMGVLFAIFLLIAYGLIFNSVQANSVSRALAFAFDIPP LFSGIALAIVSLMAIVGGIKGVARLMQWFVPVMALLWVGCSIVICLWHFGQLPGIITTIV KSAFGWQEAAAGAAGYTLSQAIASGFQRGMFSNEAGMGSTPNAAASAASWPPHPAAQGIV QMIGVLGDTLILCTASAMIVLLAGNGTSAMPIEGIQLLQKAMVSLTGEWGAGFVAFIVIL FAFSSIVANYIYAENNLIFLKLDNMRVIWLLRAATISTVVGGTLISFPLLWQLADIIMAC MAITNLTAILLLSPVVHTIASDYLRQRKLGVRPEFDPRRYPDIRQQLAPESWDETPRG >gi|283548477|gb|GG730300.1| GENE 540 593774 - 594727 1231 317 aa, chain + ## HITS:1 COG:STM0007 KEGG:ns NR:ns ## COG: STM0007 COG0176 # Protein_GI_number: 16763397 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Salmonella typhimurium LT2 # 1 317 1 317 317 598 97.0 1e-171 MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK QQSNDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTDASIAKAKRLIKLYN DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVYLISPFVG RILDWYKANTDKKEYAPAEDPGVVSVTEIYEYYKQHGYETVVMGASFRNIGEIIELAGCD RLTIAPALLKELAESEGAIERKLSFSGEVKARPARITEAEFLWQHNQDPMAVDKLADGIR KFAVDQGKLEKMIGDLL >gi|283548477|gb|GG730300.1| GENE 541 594838 - 595425 708 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|134277849|ref|ZP_01764564.1| ribosomal protein S16 [Burkholderia pseudomallei 305] # 6 191 2 191 194 277 73 8e-73 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFELQTRLIPDEQAIIEQTLCE LVDEMSCHLVLTTGGTGPARRDVTPDATQAVADRQMPGFGEQMRQISLHFVPTAILSRQV GVIRKQALILNLPGQPKSIKETLEGVKNADGKVIVPGIFASVPYCIQLLDGPYVETAPDV VASFRPKSAIRDTNA >gi|283548477|gb|GG730300.1| GENE 542 595550 - 596857 1152 435 aa, chain + ## HITS:1 COG:YPO0465 KEGG:ns NR:ns ## COG: YPO0465 COG0477 # Protein_GI_number: 16120794 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 4 421 28 445 462 607 79.0 1e-173 MSQHTRPLNRQDYKTLTLAALGGALEFYDFIIFVFFAAVVGELFFPADIPEWLRQVQTFG IFAAGYLARPLGGIIMAHFGDLVGRKKMFTLSILLMAIPTLAIGLLPTYASMGILAPLLL LLMRILQGAAIGGEVPGAWVFVAEHVPERRIGIACGTLTAGLTVGILLGSVVATLVNTGL TQQAVHDYGWRIPFLLGGVFGLVAMYLRRWLQETPIFLEMQQRKALAQELPVKSVVSKHK KAVVVSMLLTWLLSAGIVVVILMSPVWLQKQYGFAPALTLQANSVATIMLCVGCLLAGFI VDRVGASKTFIAGSLLLACSSWFFYHLTGSYPQYLFLLYGLVGLCVGVVGAVPYVMVRAF PAEVRFTGISFSYNVSYAIFGGLTPIAVTMLMSVSPMAPAWYVLALSLVGLGLGIWLRQD IYHRDTSVQGELQRL >gi|283548477|gb|GG730300.1| GENE 543 596897 - 597463 829 188 aa, chain - ## HITS:1 COG:STM0009 KEGG:ns NR:ns ## COG: STM0009 COG1584 # Protein_GI_number: 16763399 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 188 1 188 188 284 93.0 6e-77 MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFAFDVIILAMGIFYGGIAQIFAGLLEYKK GNTFGLTAFTSYGSFWLTLVAILIMPKMGLADATNGQFLGVYLGLWGVFTLFMFFGTLKA ARALQFVFLSLTVLFALLAVGNIAGNEAIIHVAGWVGLVCGASAIYLAMGEVLNEQFGRT ILPIGEAH >gi|283548477|gb|GG730300.1| GENE 544 597618 - 598325 708 235 aa, chain - ## HITS:1 COG:STM0010 KEGG:ns NR:ns ## COG: STM0010 COG4735 # Protein_GI_number: 16763400 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 232 1 232 237 353 90.0 1e-97 MNVTYLNDDDLAFLQHCSEEQLADITRLLTHNEKGKARLSSVLSHNELFKSMEGHPEQHR RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVAKRLKLKADKEMSTFEIEQCLLEH FLRNAWQKMDAEHKQEFLQAVDAKVSELEELLPLLMKDRNLAKGVSHLLSGQLTKILRTH AAVSVIGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMINSA >gi|283548477|gb|GG730300.1| GENE 545 598373 - 598777 147 134 aa, chain - ## HITS:1 COG:no KEGG:SG0011 NR:ns ## KEGG: SG0011 # Name: yaaI # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 134 1 134 134 221 86.0 1e-56 MKSVLTLSASLLMGLLLSNAAHANDHKVLGMIAMPRNETNDLALKIPVCRVVKRIQLTAD HGDIQLSGASVYFKAARSASQNLSVPSTIKEGQTTDWININSDNDNKRCVSKITFSGHTV NSSDMATLKIIGDD >gi|283548477|gb|GG730300.1| GENE 546 599162 - 601081 2421 639 aa, chain + ## HITS:1 COG:STM0012 KEGG:ns NR:ns ## COG: STM0012 COG0443 # Protein_GI_number: 16763402 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Salmonella typhimurium LT2 # 1 639 1 638 638 1085 96.0 0 MGKIIGIDLGTTNSCVAIMDGTTARVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT NPQNTLFAIKRLIGRRFQDEEVQRDEAIMPYKIIGADNGDAWIDVKGQKMAPPQISAEVL KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG LDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRMINYL VDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKE PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTPLIAKNTTIPT KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKDLGQFNLDGINPAPRGMPQIEVTFDIDA DGILHVSAKDKNSGKEQKITIKASSGLNEEEIQKMVREAEANAESDRKFEELVQTRNQGD HLLHSTRKQVEEAGDKLPADDKTAIESALTALETSLKGEDKADIEAKMQALAQVSQKLME IAQQHAQQQAGAAGADASANNAKDDDVVDAEFEEVKDKK >gi|283548477|gb|GG730300.1| GENE 547 601169 - 602302 1369 377 aa, chain + ## HITS:1 COG:ECs0015 KEGG:ns NR:ns ## COG: ECs0015 COG0484 # Protein_GI_number: 15829269 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Escherichia coli O157:H7 # 1 377 1 376 376 678 96.0 0 MAKQDYYEILGVSKSAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDA QKRAAYDQYGHAAFEQGGMGGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRASRGADLRY NMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKSGTQPQTCPTCHGSGQVQMRQGFFAV QQTCPHCQGRGTLIKDPCNKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGA PAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKIPGETQT GKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNDKQKQLLKDLQDSFGGPTGEQNSPR SKSFFDGVKKFFDDLTR >gi|283548477|gb|GG730300.1| GENE 548 602509 - 603675 1205 388 aa, chain + ## HITS:1 COG:STM0039 KEGG:ns NR:ns ## COG: STM0039 COG3004 # Protein_GI_number: 16763429 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Salmonella typhimurium LT2 # 1 388 1 388 388 610 93.0 1e-174 MKHLHRFFSSDASGGIILIIAAVIAMLMANIGITSGWYHAFLETPVQLRVGALEINKNML LWINDALMAVFFLLIGLEVKRELMQGSLASLRQAAFPIIAAIGGMIVPALLYLAFNYADP ITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIVIIALFYTSDLS LLSLGVAACAILVLAALNLCGVRRTGIYILVGAVLWTAVLKSGVHATLAGVIVGFFIPLK EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTIDGLTSVLPLGIIAGLLIGK PLGISLFCWLALRFRLAQLPEGTNFQQIMAVGILCGIGFTMSIFIASLAFGNVDPELINW AKLGILIGSLLSAVIGYCWLRTRLNASA >gi|283548477|gb|GG730300.1| GENE 549 603714 - 604607 881 297 aa, chain + ## HITS:1 COG:nhaR KEGG:ns NR:ns ## COG: nhaR COG0583 # Protein_GI_number: 16128014 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 294 3 296 301 580 93.0 1e-166 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIKALEERLQGKLFKRKGRGLEP SELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKQLVSRVLDAAVVEDE QIHLRCFESTHEMLLDQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTQPLPE KPFPACLEERRLLIPGRRSMLGRKLLNWINSQGLNVEILGEFDDAALMKAFGATHNAIFV APTLYSNNFYADDSIVEIGRVENVMEEYHAIFAERMIQHPAVQRICNADYSALFKLQ >gi|283548477|gb|GG730300.1| GENE 550 604662 - 606701 1791 679 aa, chain - ## HITS:1 COG:STM0041 KEGG:ns NR:ns ## COG: STM0041 COG1501 # Protein_GI_number: 16763431 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Salmonella typhimurium LT2 # 1 679 1 679 679 1338 93.0 0 MPFLQQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNEDWALTEPVAESTCHIV YDQKQATLTNGKIIAIVNQKGQITFYRHPHKCLLQEFWRLRGEIGEDESSHGQYVSALNL EGREFRPIQGGKYAIKARFEAAEDEKIYGMGQYQQANLDLKGCVLELAQRNSQASVPFML SSLGYGFLWNNPAVGRVTFAHNVTEWEAQVSEQLDYWITAGDTPAEISQAYALATGTPPM MPDYAMGFWQCKLRYRTQEELLAVAREYKQRNLPISVIVIDFFHWPNQGDWMFDPRDWPD PDAMIAELKSLGIELMVSVWPTVDNRTESYREMRENGWLVQTERGLPINMDFLGNTTFFD ATHPGARDYVWGKAKRNYYDKGVKLFWLDEAEPEFSVYDYDNYRYHAGPVLEVGNIYPRM YAKTFFDGMKADGEDKVINLLRCAWAGSQKYGALVWSGDIHSSFRSLRNQFAAGLNMGIA GIPWWTTDIGGFHGGNIHDPRFHELLIRWFQWGVFSPVMRLHGNRDPQILPEQPYRDGIA QCPTGAPNEVWSYGEDVYDILTGCLTLREKLKPYIKALMAETHERNAPVMRTLFFEFPEQ TKSWEIADQYCFGPDLLIAPVIHEGMRERDVWLPEGEKWTDLATGESYSGGQTLRYAAPL NRIPAFIREGGRYRSLLSL >gi|283548477|gb|GG730300.1| GENE 551 606742 - 608115 817 457 aa, chain - ## HITS:1 COG:STM0042 KEGG:ns NR:ns ## COG: STM0042 COG2211 # Protein_GI_number: 16763432 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 1 456 1 456 457 792 95.0 0 MSSVIEDTQSCGSTSLSLLQRISYGSLDVAGNLLYCFGSTYILYFYTDVAGISLAVAGVI LLLARIVDGIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAVFSALSFWSPDISMTGKAI YAAISYMIASILFTGLNTPLSAILPLMTLSPKERLVLNSWRMTGGQIGVLLMNATALPLV AFLGNGDDHAGFIYTAITFAVISCALTLFAFKNIREMDADKIQQEPRLPMKKSFAAMKGN WPWILMVLANLIFWVALQQRSTTIVYYLTYNLDRKDLVPLINSLATIQILFIIAIPFFSK YLSKTWIWIGGLLVATFGGVMMWLAADNIPFLIAAWVLGNIGSGIACSMPFAMLGFAVDF GAWKTGIKATGILIAFGSTFCIKMGSGLGTAFAAWIMNSFGYVPNHAQSAAGLEGITWAF IWAPALLFTLAAIPLLFFRKYEAMEDEVRRDLETINH >gi|283548477|gb|GG730300.1| GENE 552 608564 - 608827 422 87 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227331521|ref|ZP_03835177.1| hypothetical protein CIT292_00917 [Citrobacter youngae ATCC 29220] # 1 87 1 87 87 167 98 1e-39 MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKATALKAFNEMQPIVDR QAAKGLIHKNKAARHKANLTAQINKLA >gi|283548477|gb|GG730300.1| GENE 553 609156 - 610094 397 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 306 1 312 317 157 33 9e-37 MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMIFEPQPLE LFATDKSPARLTRLREKLRYLAECGVDYVLCVRFDRRFASLTAQNFISDLLVKRLGVQFL AVGDDFRFGASRAGDFLLLQEAGAEYGFDITSTQTFCEGGVRISSTAVRQALADDNLQLA ESLLGHPFTISGRVVHGDELGRTIGFPTANLPLRRQVSPVKGVYAVEVMGLGDKPFPGVA NIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVVLRKKIRNEQRFASLDELKAQIARDEL TAREFFGLTKPA >gi|283548477|gb|GG730300.1| GENE 554 610132 - 612948 3263 938 aa, chain + ## HITS:1 COG:ileS KEGG:ns NR:ns ## COG: ileS COG0060 # Protein_GI_number: 16128020 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Escherichia coli K12 # 1 938 1 938 938 1892 95.0 0 MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA NGSIHIGHSVNKILKDIIVKSKGLTGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAA EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFHAADRDAVKAKFGVSDVNGPISLVIW TTTPWTLPANRAISLAPDFDYALVQIDGQAVIVAKDLVESVMQRIGAADYTILGTVKGAE LELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLEVANPVGPD GAYLPGTYPTLDGVNVFKANDIVVALLTEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK DTEELHPRAIELMEEVAKRVEVDGIQAWWDLDPKDILGDEADQYVKVPDTLDVWFDSGST HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR FLLANLNGFDPVKDMVKPEEMVVLDRWAVGCAQAAQEEILKAYEAYDFHEVVQRLMRFCS VEMGSFYLDIIKDRQYTAKADSVARRSCQTALFHIAEALVRWMAPIMSFTADEIWGYLPG DREKYVFTGEWYEGLFGLGETEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV TLYAEPELAAKLTALGEELRFVLLTSGASVADYAAAPADAQQSELLKGLKIVLSKAEGEK CPRCWHYTTDVGQVAEHADICGRCVSNIAGDGEQRKFA >gi|283548477|gb|GG730300.1| GENE 555 612948 - 613445 611 165 aa, chain + ## HITS:1 COG:STM0047 KEGG:ns NR:ns ## COG: STM0047 COG0597 # Protein_GI_number: 16763437 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Salmonella typhimurium LT2 # 1 163 1 163 166 295 95.0 2e-80 MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVSLFPSLNLHYARNYGAAFSF LADSGGWQRWFFAGIAIGICVILMVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF VVDMIDFYVGDWHFATFNLADTAICIGAALIVLEGFLPSKEKKAA >gi|283548477|gb|GG730300.1| GENE 556 613563 - 614012 272 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225086978|ref|YP_002658248.1| ribosomal protein S2 [gamma proteobacterium NOR5-3] # 1 144 1 143 148 109 38 3e-22 MSKSVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQHLLGLKEGDK TAFALEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS ITVDFNHPLAGHTVHFDIEVLEVEPALEA >gi|283548477|gb|GG730300.1| GENE 557 614014 - 614964 440 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227371337|ref|ZP_03854821.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P [Veillonella parvula DSM 2008] # 1 298 1 287 632 174 34 1e-41 MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI SEVPDGAILIFSAHGVSQAVRNEAKGRDLTVFDATCPLVTKVHMEVARASRRGEESILIG HAGHPEVEGTMGQYSNPQGGMYLVESPEDVLKLTVKNEGKLSFMTQTTLSVDDTSDVIDA LRQRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVLVVGSKNSSNSNRLAELAQRMGK AAYLIDDATDIQEAWVKEAKCVGVTAGASAPDILVQNVIARLQELGGGEAIPLEGREENI VFEVPKELRVDVREVE >gi|283548477|gb|GG730300.1| GENE 558 615030 - 615944 993 304 aa, chain + ## HITS:1 COG:STM0051 KEGG:ns NR:ns ## COG: STM0051 COG1957 # Protein_GI_number: 16763441 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Salmonella typhimurium LT2 # 3 303 5 305 306 503 84.0 1e-142 MRLPIILDTDPGIDDAAAIAAALFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNADI PLAQGASMPLVRPLRDAASVHGESGMEGYEFVEHDRQVMAKPAFQAIRDALMHAPQPVTL VSIGPLTNIALLLTHYPECVFNIHRLVIMGGSAGRGNFTPNAEFNIAIDPEAAAKVFQSG LEIVMCGLDVTNQAVLTPEYLSTLPALNKTGSMLHALFSHYRSGSMQSGLRMHDLCAIAW LVRPALFTLQSCFVAVETQGEYTSGTTVVDIEGRLGQPANAQVALDLDVEGFRQWVAEVF ARAL >gi|283548477|gb|GG730300.1| GENE 559 615945 - 616853 734 302 aa, chain - ## HITS:1 COG:VCA0889 KEGG:ns NR:ns ## COG: VCA0889 COG0583 # Protein_GI_number: 15601643 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Vibrio cholerae # 5 297 9 301 312 250 41.0 2e-66 MNPNLLPDLATFVLIIDQGSFSAAAKASGATPSAISRSASRLEKALGSKLLHRTTRKLAL SETGKIVYAHAQEMLHAAQMAVDSGSSRQTIAQGQLTLSVPKAVGRFVIHPLMAEFFTRY PQVDVRLRLEDRYMDLIDDGVDLALRISQSPSPGLYGKPLMPVSHVICATPEYLRKYGTP EHPQALREHSCISLGETPADSRWKFRRGERMEIIQTHGRYAANHTGVRLDAVKKDLGIGS LPLFTASEALANGEIVQVLPEWEFISDYSGELWLLWTRNQHMPARMRAMIDYLSEKVPLH ST >gi|283548477|gb|GG730300.1| GENE 560 616946 - 617578 416 210 aa, chain + ## HITS:1 COG:CAC0906 KEGG:ns NR:ns ## COG: CAC0906 COG2872 # Protein_GI_number: 15894193 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain # Organism: Clostridium acetobutylicum # 1 206 1 223 387 80 26.0 2e-15 MTERLYYTSDNTEGQANLLSCLAEPDGRYAVVLDRTLFHPQGGGQPADAGWIDDEPVETV LARGDDVLHIVAKPLLPGIVNLRVDAALRQLHARLHSAGHLIGLAGTAFGWRPVKAHHWP NEGRITFAAGENGTLPDTLSLQEKINAWQADNLSRQVTFTDGLRQVGFGHLLAYPCGGTH VAHLSEIGPVTITQVKMKKGQMIVNYTLVP >gi|283548477|gb|GG730300.1| GENE 561 617847 - 618668 1069 273 aa, chain + ## HITS:1 COG:STM0064 KEGG:ns NR:ns ## COG: STM0064 COG0289 # Protein_GI_number: 16763454 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Salmonella typhimurium LT2 # 1 273 1 273 273 456 92.0 1e-128 MHEAQIRVAIAGAGGRMGRQLIQAAMAMEGVQLGAALEREGSSLLGGDAGELAGVGKANV IVQSSLEAVKDDFDVFIDFTRPEGTLAHLAFCRQHGKGMVIGTTGFDDAGKQAIRDAAQE IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAG ALDKDLQDCAVYSREGYTGERVPGTIGFATVRAGDIVGEHTAMFADIGERIEITHKASSR MTFANGAVRSAIWLKSKSNGLFDMKDVLDLRSL >gi|283548477|gb|GG730300.1| GENE 562 619097 - 620272 1164 391 aa, chain + ## HITS:1 COG:ECs0035 KEGG:ns NR:ns ## COG: ECs0035 COG0505 # Protein_GI_number: 15829289 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Escherichia coli O157:H7 # 10 391 1 382 382 746 94.0 0 MSEYSLEGVLIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQ IVTLTYPHIGNVGTNEADAESSQVHAQGLVIRDLPLIASNFRDTEDLSSYLKRHNIVAIA DIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKAKAFPGLNGMDLAKEVTTAEPYSWT QGSWTLAGDLPEAKSADELPFHVVAYDFGAKRNILRMLADRGCRLTVVPAKTSAEDVLKM NPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTIKMKFGHH GGNHPVKDIDNNTVMITAQNHGFAVDEASMPANLRVTHKSLFDGTLQGIHRTDKPAFSFQ GHPEASPGPHDAAPLFDHFIELIEQYRQSAK >gi|283548477|gb|GG730300.1| GENE 563 620290 - 623514 4350 1074 aa, chain + ## HITS:1 COG:STM0067 KEGG:ns NR:ns ## COG: STM0067 COG0458 # Protein_GI_number: 16763457 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Salmonella typhimurium LT2 # 1 1074 1 1074 1075 2088 97.0 0 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA DAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGTGGG IAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP RFNFEKFVGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA LTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVTEVG INGLDADFLRVLKRKGFADARLAKLAGVREAEIRKLREQYNLHPVYKRVDTCAAEFATDT AYMYSTYEDECEANPSVDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP VIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVL GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIME HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI EVNPRAARTVPFVSKATGVPLAKVAARVMAGKTLAQQGVTKEVIPPYYSVKEVVLPFNKF PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSSSTMKKQGRALLSVREGDKERVVDL AAKLLKFGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTEGR QAIEDSKLIRRSALQYKVHYDTTLNGGFATAMALNADATEKVTSVQEMHAQIKK >gi|283548477|gb|GG730300.1| GENE 564 623791 - 624186 217 131 aa, chain + ## HITS:1 COG:no KEGG:SG0071 NR:ns ## KEGG: SG0071 # Name: caiF # Def: DNA-binding transcriptional activator CaiF # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 131 1 131 131 234 93.0 6e-61 MCEKYVERPLYLLIADWMMAEDRWITAKEISRHFDIEHCKAINTLSYILSEVSEIVCEVK MIPNQIAGRGCQCQRLVKVISIDSHLYRRLNHNLQEKKVSLAKTPRLSAVPPTELNREQK WQMMLSKSMRR >gi|283548477|gb|GG730300.1| GENE 565 624263 - 624859 634 198 aa, chain - ## HITS:1 COG:STM0069 KEGG:ns NR:ns ## COG: STM0069 COG0663 # Protein_GI_number: 16763459 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Salmonella typhimurium LT2 # 1 198 1 198 198 376 92.0 1e-104 MSYYAFEGLIPVVHPEAFVHPSAVLIGDVIVGAGVYIGPHASLRGDYGRLILETGANLQD GCIMHGYCDTDTIVHENGHIGHGAILHGCVVGRDALIGMNSVIMDGAVIGAQSIVAAMSF VKAGFQGEARQLLVGSPARVLREVTDQELHWKRLNTKEYQDLAIRCQTGLHETQPLTQVE ENRPRLKGTTDVKPKSAR >gi|283548477|gb|GG730300.1| GENE 566 624969 - 625754 1053 261 aa, chain - ## HITS:1 COG:STM0070 KEGG:ns NR:ns ## COG: STM0070 COG1024 # Protein_GI_number: 16763460 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Salmonella typhimurium LT2 # 1 261 1 261 261 494 98.0 1e-140 MSESLHLTRNGPILEITLDRPKANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFF SAGWDLKAAAEGEAPDADFGPGGFAGLTEVFDLNKPVIAAVNGYAFGGGFELALAADFIV CTENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVV SQSELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHS EDALEGPQAFAEKRDPVWKGR >gi|283548477|gb|GG730300.1| GENE 567 625810 - 627363 1357 517 aa, chain - ## HITS:1 COG:STM0071 KEGG:ns NR:ns ## COG: STM0071 COG0318 # Protein_GI_number: 16763461 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 1 517 1 517 517 1075 96.0 0 MDIVGGQNLRQMWDDLAGVYGDKTALIFESCEGVVRQFSYASLNEEINRTANLFHSLGIR KGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLAEESAWILQNSQVSLLVTSAQFY PMYRQIRQENSTPLNHICLIGEHVPADDGVSHFTQLQARQSATLVYTPALSTDDTAEILF TSGTTSRPKGVVITHYNLRFAGYYSAWQIALRNDDVYMTVMPAFHIDCQCTAAMPAFSAG STFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTLMVQPAAPTDRQHHLREVMFYLNLS AQEKDAFIERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFTYEAEIRDDQNRP VPAGEIGEICIKGIPGKTIFKEYYMQPEATAKSLEAGGWLHTGDSGYQDEDGYFYFVDRR CNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEF FSFCENNMAKFKVPSFMEIRTDLPRNCSGKIIKKNLK >gi|283548477|gb|GG730300.1| GENE 568 627425 - 628642 1401 405 aa, chain - ## HITS:1 COG:STM0072 KEGG:ns NR:ns ## COG: STM0072 COG1804 # Protein_GI_number: 16763462 # Func_class: C Energy production and conversion # Function: Predicted acyl-CoA transferases/carnitine dehydratase # Organism: Salmonella typhimurium LT2 # 1 405 1 405 405 829 99.0 0 MNHLPMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVI AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGMTATTAA LAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEICPRMTKGKDPYYAGCGLYK CADGYIVMELVGITQINECFKDIGLAHILGTPEVPEGTQLIHRVECPYGPLVEEKLDAWL AEHTIADVQARFAELNIACAKVLTIPELEGNPQYVARESITQWQTMDGRTCKGPNIMPKF KNNPGKIWRGMPSHGMDTAAILKNIGYSEADINELVGKGLARVEE >gi|283548477|gb|GG730300.1| GENE 569 628754 - 629896 1342 380 aa, chain - ## HITS:1 COG:STM0073 KEGG:ns NR:ns ## COG: STM0073 COG1960 # Protein_GI_number: 16763463 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 380 1 380 380 781 99.0 0 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH GGLEAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFQGTGKQMW NSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY TEWFVDMSKAGIKVNKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE RFLVALTNYGTAMCAFEDAARYANQRVQFGETIGRFQLIQEKFAHMAIKLNSMKNMLLEA AWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQVLGGVGIAGNHRITRFWRDLRVDRVS GGSDEMQILTLGRAVLKQYR >gi|283548477|gb|GG730300.1| GENE 570 629931 - 631448 1799 505 aa, chain - ## HITS:1 COG:STM0074 KEGG:ns NR:ns ## COG: STM0074 COG1292 # Protein_GI_number: 16763464 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Salmonella typhimurium LT2 # 1 505 1 505 505 936 98.0 0 MKDEKKKSGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV IMLFGWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP FGLAPNSVGAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMDVIRPSSTLVPLVG EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQYLFGIPHTLQLDAIIITCWI ILNAICVACGLQKGVKIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMHLPRM LFYTDAIGKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTW ILWTVLGSNTLLLMDKNILNIPQLIEQHGVARAIIETWAALPLSTATMWGFFILCFIATV TLINACSYTLAMSTCREVRDGEEPPLLVRIGWSVLVGIIGIVLLALGGLKPIQTAIIAGG CPLFFVNIMVTLSFIKDAKVHWKDK >gi|283548477|gb|GG730300.1| GENE 571 631929 - 632699 765 256 aa, chain + ## HITS:1 COG:STM0075 KEGG:ns NR:ns ## COG: STM0075 COG2086 # Protein_GI_number: 16763465 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Salmonella typhimurium LT2 # 1 256 1 256 256 434 96.0 1e-121 MKIITCYKCVPDEQDIAINNADGSLDFSKADGKISQYDLNAIEAACQLKQQVGEAQVIAM SVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTATALAAAAQKTGFDLLICGD GSSDLYAQQVGLLVGETLNVPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAV STDINTPQIPSMKAILGAAKKPVQVWSPTDIGLNSVPAYSAQQVAAPKQRERQRVVIEGD GEEQIAAFVENLRKII >gi|283548477|gb|GG730300.1| GENE 572 632715 - 633656 1033 313 aa, chain + ## HITS:1 COG:STM0076 KEGG:ns NR:ns ## COG: STM0076 COG2025 # Protein_GI_number: 16763466 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 313 1 313 313 571 95.0 1e-163 MNKFSSVWVFSDTPSRLPELMNGAQAVGEKVNTFVLNEADSATACQLGADHVWLLSGKPD DRMVEDYAAVMAETIRQHSEGGAVLLPNTRRGKLLAAKLGFRLSAAVSNDASEVALQDGK AAVKHMVYGGLAIGAETIASPFAVITVSSGTFDAQQPDAARSGEMHTVQWQAPAVAVTRT ATQARQSNSVDLDKARLVVSVGRGIGSKDNISLAEALCQAIGAELACSRPVAENEKWMEH ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADYGIVGDA LKILPALTAALAR >gi|283548477|gb|GG730300.1| GENE 573 633706 - 634992 1350 428 aa, chain + ## HITS:1 COG:STM0077 KEGG:ns NR:ns ## COG: STM0077 COG0644 # Protein_GI_number: 16763467 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Salmonella typhimurium LT2 # 1 428 1 428 428 800 97.0 0 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLERIIP GFAEQAPIERMITHEKLAFMTDSGAMTIDYCNGEEAAASQVSYSVLRSKFDAWLMEQAEE AGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILADGVNSLLAEKLGMAKRVEASH VAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGSPTDGLMGGGFLYTNETTLSLGLVCG LHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYAAHVVPEAGMNMQPELVGEGVLIA GDAGGMCMNLGFTIRGMDLAISAGEAAAKTVLSAMKRDDFSKQSLGEYHQHLDDGPMRDM RMYQKLPAFLDNPRMFTAYPEMAVSIARDLFTVDGSAPVPMRKKILRHAKKVGFINLMKD GLKGVTVL >gi|283548477|gb|GG730300.1| GENE 574 634989 - 635276 309 95 aa, chain + ## HITS:1 COG:STM0078 KEGG:ns NR:ns ## COG: STM0078 COG2440 # Protein_GI_number: 16763468 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Salmonella typhimurium LT2 # 1 95 1 95 95 196 97.0 7e-51 MTSPVNVDVKLGVNKFNVDEESPHIILKTDPDKQALEVLIKACPAGLYKKQDDGSVRFDY AGCLECGTCRILGLGTALEKWEYPRGTFGVEFRYG >gi|283548477|gb|GG730300.1| GENE 575 635424 - 636767 1450 447 aa, chain + ## HITS:1 COG:yaaU KEGG:ns NR:ns ## COG: yaaU COG0477 # Protein_GI_number: 16128039 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 440 1 440 443 762 90.0 0 MQQPRNFDDIKFTSIHRRIMLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGA GTLAGLFIGTSLFGYISDKVGRRKMFIIDIIAIGVISAATMFVTSPVELLVMRVLIGIVI GADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCADLVGYCLYDVEGGWRWMLGSAV IPCILILIGRFDLPESPRWLLRKGRVKECEAMMIKLFGEPVVFDEEAPQETRFLQLFNRR HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGAGKSAALGNVVISLCFMLGCIPPM FWLNSAGRRPLLIGSFIMMTLALAVLGLIPDLGAWLVVLAFAVYAFFSGGPGNLQWLYPN ELFPTDIRASAVGVIMSLSRIGTIVSTWALPVFITKYGISNVMLMGAGISLVGLLVSIAF APETRGLTLAQTSQMTIRSKPVTRAGY >gi|283548477|gb|GG730300.1| GENE 576 636858 - 637091 325 77 aa, chain + ## HITS:1 COG:no KEGG:CKO_03336 NR:ns ## KEGG: CKO_03336 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 77 1 77 77 114 88.0 9e-25 MQKHILIASIFTAATLFTVAGCSSNQAVKTTDGRTIVTDGKPQVDDDTGLVSYKNAQTGK TEQINRDQVKDMSELDN >gi|283548477|gb|GG730300.1| GENE 577 637376 - 637906 599 176 aa, chain + ## HITS:1 COG:yabF KEGG:ns NR:ns ## COG: yabF COG2249 # Protein_GI_number: 16128040 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli K12 # 1 176 1 176 176 328 91.0 3e-90 MILIIYAHPYPQHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQDALARADLII WQHPMQWYSTPPLLKLWMDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGENHFDIGSHPG FDVLSQPLQATALYCGLKWLPPFAMHCTFICDDETLQAQARHYKQRLLEWQEVHHG >gi|283548477|gb|GG730300.1| GENE 578 637899 - 639761 1000 620 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 6 559 9 569 618 389 38 1e-106 MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE IGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMAVCGGLIGLFCMFLGLRWQVAELIGM TLALSSTAIAMQAMNERNLMVSQMGRSAFAVLLFQDIAAIPLVAMIPLLAASGASTTLGA FALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLS MAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVDNPLRIVILL VGFLVIKIVMLWLIAKPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLDPDWAKAL TLAVALSMAATPILLVILTRLEKSATGEEREADEIDEEQPRVIIAGFGRFGQITGRLLLS SGVKMVVLDHDPDHIETLRKFDMKVFYGDATRMDLLESAGAAKAEVIVNAIDDPQTSLQL TEMVKEHFPHLQIIARARDVDHYIRLRQAGVEMPERETFEGALKTGRLALEGLGLGRYEA RERADVFRRFNMLMVEEMVKGENDASSRAAVYKRTSAMLSEIIAEDRQHLSLIQRHGWQG TDEGKHTGDVADEPEVKPSA >gi|283548477|gb|GG730300.1| GENE 579 639960 - 640439 608 159 aa, chain + ## HITS:1 COG:STM0087 KEGG:ns NR:ns ## COG: STM0087 COG0262 # Protein_GI_number: 16763477 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Salmonella typhimurium LT2 # 1 159 1 159 159 328 98.0 3e-90 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRHTWESIGRPLPGRKNI VISSKPGTDDRVQWVKSVDEAIAACGDEPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR >gi|283548477|gb|GG730300.1| GENE 580 640530 - 641378 839 282 aa, chain - ## HITS:1 COG:STM0088 KEGG:ns NR:ns ## COG: STM0088 COG0639 # Protein_GI_number: 16763478 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Salmonella typhimurium LT2 # 1 282 1 282 282 556 92.0 1e-158 MATYLIGDVHGCYDELVALLHQVNFTPEKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADVLLNWLRRQPLLQIDEEKKLVMAH AGITPQWDLQTAKDCARDVEAVLSSDSYPFFLDAMYGDMPNNWTPELTGLARLRFITNAF TRMRYCFPNGQLDMYSKESPEDAPAPLKPWFAIPGPVSEAYSIAFGHWASLEGKGTPEGI YALDTGCCWGGDLTCLRWEDKRYFVQPSNRHLNLDPGEAVNA >gi|283548477|gb|GG730300.1| GENE 581 641389 - 641766 438 125 aa, chain - ## HITS:1 COG:STM0089 KEGG:ns NR:ns ## COG: STM0089 COG2967 # Protein_GI_number: 16763479 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein affecting Mg2+/Co2+ transport # Organism: Salmonella typhimurium LT2 # 1 125 1 125 125 235 96.0 2e-62 MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNGHGRET EVQGEGVVGVQPHIEPGEEYQYTSGAVIETPLGTMQGHYEMIDEQGIAFTIDIPVFRLAV PTLIH >gi|283548477|gb|GG730300.1| GENE 582 641769 - 642590 785 273 aa, chain - ## HITS:1 COG:ECs0056 KEGG:ns NR:ns ## COG: ECs0056 COG0030 # Protein_GI_number: 15829310 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Escherichia coli O157:H7 # 1 273 1 273 273 514 94.0 1e-146 MNNRVHQGHLARKRFGQNFLNDQFVIESIVSAINPQKGQAMVEIGPGLAALTEPVGERLD KLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAQTMGQPLRVFGNLPYNIST PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA FTPAPKVDSAVVRLVPHATMPYPVKDVRVLSRITTEAFNQRRKTVRNSLGNLFSVEVLTE LGIDPAMRAENISVAQYCRMANYLSENAPSKES >gi|283548477|gb|GG730300.1| GENE 583 642583 - 643575 446 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 7 324 9 326 346 176 33 2e-42 MARIQRVVITPGEPAGIGPDLVLQLAQREWPVELVVCADAALLNDRAAMLGLPLSLLPYS PDTPAKPQSAGTLTLLPVALRAPAVAGQLAVENGQYVVDTLARACDGCLHGEFAALITGP VHKGVINDAGVPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRAVADAITPAL LREVIGILHHDLRTKFGIADPHILVCGLNPHAGEGGHMGTEEIDTMIPVLDELRAQGMKL NGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA LELAGRGQADVGSFITALNLAIKMIVNTNE >gi|283548477|gb|GG730300.1| GENE 584 643575 - 644861 1470 428 aa, chain - ## HITS:1 COG:STM0092 KEGG:ns NR:ns ## COG: STM0092 COG0760 # Protein_GI_number: 16763482 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Salmonella typhimurium LT2 # 1 428 1 428 428 729 93.0 0 MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQL PDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAQ DGLNYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHIL IPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELP GIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTD QQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKL NKGQMSAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRAS AYVKILSN >gi|283548477|gb|GG730300.1| GENE 585 644915 - 647269 2440 784 aa, chain - ## HITS:1 COG:imp KEGG:ns NR:ns ## COG: imp COG1452 # Protein_GI_number: 16128048 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Organic solvent tolerance protein OstA # Organism: Escherichia coli K12 # 1 784 1 784 784 1440 90.0 0 MKKRIPTLLATMIASALYSQQGLAADLASQCMLGVPSYNRPLVQGETNELPVTINADHAK GNYPDDAVFTGNVDIAQGNSRLQADEVQLHQKQAEGQPEPVRTVDALGNVHYDDNQVILK GPKGWSNLNTKDTNIWEGDYQMVGRQGRGKADLMKQRGENRYTILENGSFTSCLPGSDTW SVVGSEVIHDREEQVAEIWNARFKLGPVPVFYSPYLQLPVGDKRRSGFLIPNAKYSTNNY FEFYLPYYWNIAPNMDATITPHYMHRRGGIMWENEFRYLTQAGAGLMELDYLNSDKVYED EHPKDDNSRRWLFYWQHSGVMDQVWRFNVDYTKVSDTSYFNDFDNKYGSSTDGYATQKFS VGYAVQNFDATVSTKQFQVFDSANSNSYSAQPQLDVNYYQNDVGPFDTRIYGQAVHFVNT NDNMPEATRVHLEPTINLPLSNNWGSINTEAKLMATHYQQTNLDWYNANNATKLDDSANR VMPQFKVDGKLIFERDMQMLAPGYTQTLEPRAQYLYVPYRDQSHIYNYDSSLLQSDYSGL FRDRTYGGLDRIASANQVTTGVTSRVYDDAAVERFNISVGQIYYFTESRTGDDNIKWEND DKTGSLVWAGDTYWRISDRWGLRSGIQYDTRLDSVATSSSSIEYRRDENRMLQLNYRYAS SEYIQATLPSYYSTADQYKNGISQVGAVASFPIADRWSIVGAYYFDTNVNKEADSMLGLQ YNSCCYAIRFGYERKLNGWDDTQKHAVYDNSIGFNIELRGLSSNYGLGTNQMLRSNILPY QSSL >gi|283548477|gb|GG730300.1| GENE 586 647525 - 648340 778 271 aa, chain + ## HITS:1 COG:STM0094 KEGG:ns NR:ns ## COG: STM0094 COG1076 # Protein_GI_number: 16763484 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Salmonella typhimurium LT2 # 1 271 1 270 270 508 97.0 1e-144 MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARMRKMAWFANQRERQALFFATTFE VMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQHAFRVGKSDNYPLREKMRQFRS VCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEELGISRTQFDQFLRMMQGGAQ FGGGYQQQSGGGGWQQAQRGPTLEDACNVLGVKATDDATTIKRAYRKLMSEHHPDKLVAK GLPPEMMEMAKQKAQEIQKAYELIKEQKGFK >gi|283548477|gb|GG730300.1| GENE 587 648429 - 649088 220 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 16 218 83 281 285 89 30 3e-16 MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLDEHKDSVMTRIQRDYPQAESV HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPAPAEGLVDLPLICDWP NRPKQKVCYETGKPAQTEYEVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF YAPPEALAMAPRLLLHAEMLTITHPEYGNSMTFKVPADF >gi|283548477|gb|GG730300.1| GENE 588 649099 - 652005 3434 968 aa, chain - ## HITS:1 COG:STM0096 KEGG:ns NR:ns ## COG: STM0096 COG0553 # Protein_GI_number: 16763486 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Salmonella typhimurium LT2 # 1 968 1 968 968 1840 94.0 0 MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFSSTGENRLYARSDSPVTRVMFNPGDT ITSHEGWQLHVDEVKEENGLLAYIGTRLDTEETGVTLREVLLDSKLVFSKPQDRLFAGQI DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH DAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSREYMAVE QLAERVPGILLLTATPEQLGMESHFARLRLLDPSRFHDFAQFVEEQKNYRPVADAVAMLL AGNKLNNDELNMLGDMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGD TGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI IERDRAAAWFSEEDSGAQVMLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDTVYNNLIGFLAEPENT DGFDDLIKTCREQHDALKAQLEQGRDRLLEIHSNGGEKAQRLTESIEEQDDDTSLIAFAM NLFDIVGINQDDRGDNLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTP VRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHSILQLGEAQVEKSAR ALIDAARKEADEKLTAELSRLEALRAVNPNIRDDELSAIESNRQQVLESLAQAGWRLDAL RLIVVTHQ >gi|283548477|gb|GG730300.1| GENE 589 652183 - 654534 2086 783 aa, chain - ## HITS:1 COG:polB KEGG:ns NR:ns ## COG: polB COG0417 # Protein_GI_number: 16128054 # Func_class: L Replication, recombination and repair # Function: DNA polymerase elongation subunit (family B) # Organism: Escherichia coli K12 # 1 783 1 783 783 1477 88.0 0 MAQAGFILTRHWRDTPQGTEVSFWLATDSGPLLVTLAPQESVAFIPADQVPRATSLLLAE NGYRLAPLKLQDFHRQPVSGLYCRSHRQLMRLEKLLRENNITVYEADVRPPERYLMERFI TSPVWVDGDPHNGALMNARLKPNPDYRPPLKWVSLDIETTRHGELYCIGLEGCGQRIVYM LGPANGDASALDFELEYVASRPQLLEKLNDWIARHDPDVIIGWNVVQFDLRVLQKHAERY RIPLRFGRDNSELEWREHGFKNGVFFAQTKGRLIVDGIEALKSAFWNFSSFSLETVSQEL LGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMPFLLERSTVNG LPVDRHGGSVAAFGHLYLPRMHRAGYVAPNLGEVPAHASPGGYVMDSQPGLYDSVLVLDY KSLYPSIIRTFLIDPVGLIEGMAQPDREHSTEGFLDAWFSREKHCLPEIVTQIWHGREEA KRHGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHAIMRQTKTLIEAQGYD VIYGDTDSTFVWLKKAHSEDDAARIGRELVSYINDWWARSLKQQNLTSALELEFETHFCR FLMPTIRGADTGSKKRYAGMIQDGAEQRMVFKGLETVRTDWTPLAQQFQQALYLRIFRHE PYKEFVRETIDRLMAGELDAQLVYRKRLRRPLSEYQRNVPPHVRAARLADEQNAKLGRPP QYQNRGTIKYVWTINGPEPVDYQQSALDYEHYLTRQIQPVAEGILPFIDDNFATLLTGQL GLF >gi|283548477|gb|GG730300.1| GENE 590 655105 - 655491 228 128 aa, chain + ## HITS:1 COG:no KEGG:SARI_02905 NR:ns ## KEGG: SARI_02905 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 13 125 12 124 145 152 61.0 5e-36 MEFRSKQQAGVKYANYMFVNALTSNNAVKTVSKFISYKTWNGQLWNAEIIDNGNGFFHWQ GKDKHNGHRDTVINYLVNGQKWQATIADYVFFHCLDGGQNQGHYDNVINYISANDCVYQG SFAEYYGE >gi|283548477|gb|GG730300.1| GENE 591 655529 - 656224 975 231 aa, chain - ## HITS:1 COG:araD KEGG:ns NR:ns ## COG: araD COG0235 # Protein_GI_number: 16128055 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Escherichia coli K12 # 1 231 1 231 231 466 97.0 1e-131 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVS IATGEVVEGTKKPSSDTPTHRLLYQAFPTIGGIVHTHSRHATIWAQAGQSIPATGTTHAD YFYGAIPCTRKMTDSEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA EDAVHNAIVLEEVAYMGIFCRQLTPQLPDMQQTLLDKHYLRKHGAKAYYGQ >gi|283548477|gb|GG730300.1| GENE 592 656321 - 657823 1723 500 aa, chain - ## HITS:1 COG:araA KEGG:ns NR:ns ## COG: araA COG2160 # Protein_GI_number: 16128056 # Func_class: G Carbohydrate transport and metabolism # Function: L-arabinose isomerase # Organism: Escherichia coli K12 # 1 500 1 500 500 1029 95.0 0 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI TAICRDANYDDRCAGMVVWLHTFSPAKMWINGLAILNKPLMQFHTQFNAALPWESIDMDF MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNAISDGEINALIDEYESTYTMT AATQVHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAV EEKPILDVQHLGIGGKDDPARLIFNTKTGPAVVASLIDLGDRYRLLVNCIDTVQTPHNLP KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALDLNDMRQFAEMHDIEIAVIDNDT RLPAFKDALRWNEVYYGFKR >gi|283548477|gb|GG730300.1| GENE 593 657834 - 659543 1524 569 aa, chain - ## HITS:1 COG:STM0103 KEGG:ns NR:ns ## COG: STM0103 COG1069 # Protein_GI_number: 16763493 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Salmonella typhimurium LT2 # 1 569 1 569 569 1040 91.0 0 MAIAIGLDFGSDSVRALAVECATGEEIATSVEWYPRWQEGQYCDGPNNQFRHHPRDYIES MEAALKTVLAELSAQQRAQVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK DHTAVEEAEEITRLCHTPGKIDYSRYIGGIYSSEWFWAKILHVTRQDSAVAEAAVSWIEL CDWVPALLSNTVRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPLLNSNLQYPMFT DTFTADLPVGTLCAEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNTLVKVIGTSTCDI LIADKHSVGERAVKGICGQVDGSVVPHFIGLEAGQSAFGDIYAWFSRVLSWPLEQLAAQH PELKTQIKASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA TDAPALFGGLIAATAFGARAIQECFTEQGIAVNNVMALGGIARKNPVIMQACCDVLNRPL QIIASDQCCALGAAIFAAVAANVHADIPAAQQHMASAVEKTMQPRPEQAQRFEQLYRRYL QWAVSAEQQYLPTAAPAQKTPVNQATLTH >gi|283548477|gb|GG730300.1| GENE 594 659883 - 660728 773 281 aa, chain + ## HITS:1 COG:STM0104 KEGG:ns NR:ns ## COG: STM0104 COG2207 # Protein_GI_number: 16763494 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 281 1 281 281 576 96.0 1e-164 MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNQ GKQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWQEWLAWPAIFAQTGFF RPDEAHQPHFNELFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVR DACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE >gi|283548477|gb|GG730300.1| GENE 595 660848 - 661615 872 255 aa, chain + ## HITS:1 COG:STM0105 KEGG:ns NR:ns ## COG: STM0105 COG0586 # Protein_GI_number: 16763495 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 255 1 255 255 423 93.0 1e-118 MQALLEHFILQSALYSLIAVLLVAFLESLALVGLILPGTVMMAGLGALIGSGELNFWHAW LAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNKALLDKTEHALHQHSMFTILVGRFVG PTRPLVPMVAGMLDLPVAKFIVPNIIGCVLWPPFYFLPGILAGAAIDIPSDMQSGDFKWL LLATALLLWVGGWFCWRLWRSGKAAVDRLTAFFPRSRLLYLAPLTLGVGVVALVALLRHP LMPVYLDILRKVVGY >gi|283548477|gb|GG730300.1| GENE 596 661713 - 662411 273 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 20 217 22 226 245 109 34 2e-22 MLKLIDITWLYHHLPMRFTLSVARGEQVAILGPSGAGKSTLLNLIAGFLAPASGTMLIEG EDHTATPPSRRPVSMLFQENNLFSHLSVWQNIGLGLNPGLKLNASQRKKMRHIAQQMGID SLLERLPGELSGGQRQRVALARCLVREQPVLLLDEPFSALDPALRQEMLTLVAEVCREKQ LTLLMVSHSVEDAARIATRSMVVADGRIAWQGKTDELLRGQASASALLGIKA >gi|283548477|gb|GG730300.1| GENE 597 662395 - 664005 1661 536 aa, chain - ## HITS:1 COG:ECs0071 KEGG:ns NR:ns ## COG: ECs0071 COG1178 # Protein_GI_number: 15829325 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+ transport system, permease component # Organism: Escherichia coli O157:H7 # 1 536 1 536 536 828 90.0 0 MATRRQPLIPGWLIPGLSAATPMVAVALAAFLALWFNAPQGEWPSLWRDEYLWHVVRFSF WQAFLSAVLSVIPAIFLARALYRRRFPGRLTLLRLCAMTLILPVLVAVFGILSVYGRQGW LASLWHIFGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQSLENIPGEQRQLAAQLGMRG WHFFRFVEWPWLRRQILPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALNFDYDP ARAAMLALIQMVCCLALVLLSQRLSRAIAPGATLVQGWRDPDDRLHSRLADSLLIILALL LLLPPLLAVIVDGLNRHVLDVLMQPVLWQALGTSLRIALAAGALCVILTMMLLWSSRELR ARQQMLAGQALELSGMMILAMPGIVLATGFFLLLNNTIGLPESADGIVIFTNALMAIPYA LKVLENPMRDVTARYSMLCQSLGIEGWSRLKVVELRALKRPLAQAMAFACVLSIGDFGVV ALFGNEDFRTLPFYLYQQIGSYRSQDGAVTALLLLILCFTLFTVIEKLPGRNVKTD >gi|283548477|gb|GG730300.1| GENE 598 663981 - 664964 1151 327 aa, chain - ## HITS:1 COG:STM0108 KEGG:ns NR:ns ## COG: STM0108 COG4143 # Protein_GI_number: 16763498 # Func_class: H Coenzyme transport and metabolism # Function: ABC-type thiamine transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 19 327 19 327 327 573 93.0 1e-163 MFKKCLPLLLLCAAPVFAKPVLTVYTYDSFAADWGPGPTIKKAFEADCNCELKLVALEDG VSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVPGDAVNVPGGWKNDTFVPF DYGYFAFVYDKNKLKNPPKSLKELVESDQKWRVIYQDPRTSTPGLGLLLWMQKVYGDKAP EAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHIIDEKKDNYAAANFSEGH YLQVEVAARTAASKQPELAEKFLKFMVSPAFQNAIPTGNWMYPVTQVALPSGFEQLNKPT TALEFTPQQVAAQRQTWINEWQRAVSR >gi|283548477|gb|GG730300.1| GENE 599 665141 - 666796 1540 551 aa, chain - ## HITS:1 COG:STM0109 KEGG:ns NR:ns ## COG: STM0109 COG4533 # Protein_GI_number: 16763499 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 551 1 552 552 989 88.0 0 MSSGRLQQQFIRLWQCCDGKTQDTTLNELAELLSCSRRHMRTLLNTMQERGWLTWEAEVG RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKTAVRQMLVSHLGRSFRQGRH IMRVLYYRPMRNLLPGTALRRSETHIARQIFSALIRVNEENGELEADIAHHWQQISPLHW RFFLRPGIHFHHGRELEMDDVIASLERINALPLYSHITQIVSPTAWTLDIHLAQPDRWLP WLLGQVPAMILPREWETLNNFSSHPIGTGPYAVMRNTNNQLKIHAFDDYFGYRALIDEVN VWVLPDIGEEPGGGLTLKGPTEDEKAIESRLEEGCYYLLFDARAHRGANQEVREWVSRIL SPTNLIYHADEQYQRHWFPAYGLLPRWHHARPGHGEKPAGLETLTITYYRDHIEHRIIAQ IMKTLLAEHQVQLIIQEIDYDQWHAGEIVSDIWLNSANFTLPLDFSLFAHLCEVPLLQNC VSRDWENDAARWRTGEMSLAAWCQQLLATKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFD FKSAWFAPPDP >gi|283548477|gb|GG730300.1| GENE 600 666896 - 667018 114 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRQFWLKYFTATEKSSWLACLSAPQRLKMLEELMQWEVTA >gi|283548477|gb|GG730300.1| GENE 601 667135 - 668313 1430 392 aa, chain + ## HITS:1 COG:setA KEGG:ns NR:ns ## COG: setA COG0477 # Protein_GI_number: 16128064 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 392 1 392 392 604 88.0 1e-172 MLWIMTMGRRLNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWVGLFYTVNAI AGIGVSLGLAKRSDSQGDRRKLIMFCCLMAIANALLFAFNRHYLTLITCGVLLASLANTA MPQLFALAREYADSSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTAMFSIAAGI FAISLVLIALILPSVARVEQPVDVPLEQAGGWQDKNVRMLFIASTLMWTCNTMYIIDMPL WISLELGLPDKLAGILMGTAAGLEIPAMILAGYYVKRFGKRRMMLAAVAAGVLFYLGLIF FHSRTALLVLQLFNAVFIGIIAGIGMLWFQDLMPGRAGSATTLFTNSISTGVILAGVIQG AVAQSYGHFAVYWVIAAISVVTLVMTGRVKDV >gi|283548477|gb|GG730300.1| GENE 602 668404 - 669009 749 201 aa, chain - ## HITS:1 COG:STM0110 KEGG:ns NR:ns ## COG: STM0110 COG0066 # Protein_GI_number: 16763500 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Salmonella typhimurium LT2 # 1 201 1 201 201 392 94.0 1e-109 MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPE FVLNFPEYKGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL PVKLSDEQVDELFNLVKANPGITFEVDLVAQVVKAGDKSYSFKIDDFRRHCMLNGLDSIG LTLQHEAAITEYEDKQPAFMR >gi|283548477|gb|GG730300.1| GENE 603 669020 - 670420 1749 466 aa, chain - ## HITS:1 COG:leuC KEGG:ns NR:ns ## COG: leuC COG0065 # Protein_GI_number: 16128066 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Escherichia coli K12 # 1 466 1 466 466 890 96.0 0 MAKTLYEKLFDAHVVFEAQNETPLLYIDRHLVHEVTSPQAFDGLRAHGRQVRQPGKTFAT MDHNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNHPYQGIVHVMGPEQGVTLP GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVNGTAAPGITA KDIVLAIIGKTGSAGGTGHVVEFCGEAIRALSMEGRMTLCNMAIEMGAKAGLVAPDETTF NYVQGRLHAPKGEDFAHAVEYWKTLQTDDGATFDTVVTLQAEEIAPQVTWGTNPGQVISV NDNIPDPASFADPVERASAEKALAYMGLQPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRSIK >gi|283548477|gb|GG730300.1| GENE 604 670423 - 671514 1264 363 aa, chain - ## HITS:1 COG:leuB KEGG:ns NR:ns ## COG: leuB COG0473 # Protein_GI_number: 16128067 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Escherichia coli K12 # 1 363 2 364 364 711 95.0 0 MSKNYHIAVLPGDGIGPEVMAQALKVLDAIRHRFNMRITTSHYDVGGAAIDNHGQPLPPA TVEGCEQADAILFGSVGGPKWENLPPNQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAF CPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQHEKAFDTEVYHRFEIERIARIAF ESARQRRRKVTSIDKANVLQTSILWREIVNEIANEYPDVELAHMYIDNATMQLIKDPSQF DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIA QILSLALLLRYSLDANDAATAIESAINRALEEGIRTGDLARGAAAVGTDEMGDIIARYVA EGV >gi|283548477|gb|GG730300.1| GENE 605 671514 - 673085 1783 523 aa, chain - ## HITS:1 COG:leuA KEGG:ns NR:ns ## COG: leuA COG0119 # Protein_GI_number: 16128068 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Escherichia coli K12 # 1 523 1 523 523 986 96.0 0 MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGAKTINIPDTVGYTMPFEF GAIISGLYERVPNIDKAIISVHTHDDLGLGVGNALAAVHAGARQVEGAMNGIGERAGNCS LEEVIMAIKVRKDILNVQTRINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH QDGVLKNRENYEIMTPESIGLNQVQLNLTSRSGRAAVKHRMDEMGYKENEYNLDNLYDAF LKLADKKGQVFDYDLEALAFINKQQEEPEHFRLDYFSVQSGSNDIATASVKLACGEEVKA EAANGNGPVDAIYQAINRVTEYNVELVKYSLAAKGHGKDALGQVDIVANYNGRRFHGVGL ATDIVESSAKAMIHVLNNIWRAEEVEKELQRKAQNNENNKETV >gi|283548477|gb|GG730300.1| GENE 606 673916 - 674863 506 315 aa, chain + ## HITS:1 COG:STM0115 KEGG:ns NR:ns ## COG: STM0115 COG0583 # Protein_GI_number: 16763505 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 315 1 314 314 586 91.0 1e-167 MPEVKIIDKPNLLEPGRPQLRMVDLNLLTVFDAVMQEQNITRAAHTLGMSQPAVSNAVAR LKVMFNDELFVRYGRGIQPTARAFQLFGSIRQALQLVQNELPGSGFEPTSSERVFNLCVC SPLDNILTSLIYNRVEQVAPNINVVFKSSLNQNTEHQLRYQETEFVISYEEFRRPEFSSI PLFNDEMVLVASKKHPRISGPLLESDVYNEQHAAVSLDRFASFSQPWYDTPDKQSCVAYQ GMALISVLNIVSQTHLVAIAPRWLAEEFADSLQLQILPLPLKLNSRTCYLSWHEAAGRDK GHQWMEELLVSICKQ >gi|283548477|gb|GG730300.1| GENE 607 675182 - 676906 1938 574 aa, chain + ## HITS:1 COG:ilvI KEGG:ns NR:ns ## COG: ilvI COG0028 # Protein_GI_number: 16132273 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli K12 # 1 574 1 574 574 1111 93.0 0 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVG ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPAKKLPYSWPDSV SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAVNAGCHEQLGQIAEALNLPVVSS LMGLGAFPATHRQALGMLGMHGTYEANMTMHHSDVIFAVGVRFDDRTTNNLAKYCPNATV LHIDIDPTSISKTVTADIPIVGDARLVLDQMLELLPQEKSQQPLDDNRDWWQQIEHWRAR QCLKYDTQSESIKPQAVIETIWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL GTMGFGLPAALGVKMALPDETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGM VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHIGIQINRPDELENKLSEALEHVRNRRL VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT >gi|283548477|gb|GG730300.1| GENE 608 676909 - 677400 516 163 aa, chain + ## HITS:1 COG:STM0117 KEGG:ns NR:ns ## COG: STM0117 COG0440 # Protein_GI_number: 16763507 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Salmonella typhimurium LT2 # 1 163 1 163 163 277 96.0 6e-75 MRRILSVLLENESGALSRVIGLFAQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVKRNTEIFRGQIIDVTPSIY TVQLAGTSDKLDAFLATLREVAKIVEVARSGVVGLSRGDKIMR >gi|283548477|gb|GG730300.1| GENE 609 677604 - 678656 975 350 aa, chain + ## HITS:1 COG:STM0118 KEGG:ns NR:ns ## COG: STM0118 COG1609 # Protein_GI_number: 16763508 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 17 350 1 334 334 643 97.0 0 MPSQRLWFVHFTQGAIVKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPD NEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANSSFPIVALDRALDREHFTSVVGADQ DDAEMLAQELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREA AAQLFDKWLETHPMPQALFTTSFALLQGVMDVTLRRDGQLPSDLAIATFGDHELLDFLQC PVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRN >gi|283548477|gb|GG730300.1| GENE 610 679270 - 679728 244 152 aa, chain + ## HITS:1 COG:STM0119 KEGG:ns NR:ns ## COG: STM0119 COG2001 # Protein_GI_number: 16763509 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 152 1 152 152 286 95.0 9e-78 MFRGATLVNLDSKGRLSVPTRYRDQLIESATGQMVCTIDIHHPCLLLYPLPEWEIIEQKL SRLSSMNPVERRVQRLLLGHASECQMDSAGRLLIAPILRQHAGLTKEVMLVGQFNKFELW DETTWYQQVKEDIDAEQSVTGALSERLQDLSL >gi|283548477|gb|GG730300.1| GENE 611 679730 - 680671 947 313 aa, chain + ## HITS:1 COG:STM0120 KEGG:ns NR:ns ## COG: STM0120 COG0275 # Protein_GI_number: 16763510 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Salmonella typhimurium LT2 # 1 313 1 313 313 570 94.0 1e-162 MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA IAVAKTITDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMR DGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRT KELAEVIAAAMPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIIS FHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGKMMPGEEEVAENPRA RSSVLRIAERTNA >gi|283548477|gb|GG730300.1| GENE 612 680668 - 681033 252 121 aa, chain + ## HITS:1 COG:STM0121 KEGG:ns NR:ns ## COG: STM0121 COG3116 # Protein_GI_number: 16763511 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Salmonella typhimurium LT2 # 1 121 1 121 121 223 99.0 5e-59 MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRYGKLPLCLFICIILTAVTVVTTAHHT RLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ K >gi|283548477|gb|GG730300.1| GENE 613 681049 - 682815 1712 588 aa, chain + ## HITS:1 COG:STM0122 KEGG:ns NR:ns ## COG: STM0122 COG0768 # Protein_GI_number: 16763512 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Salmonella typhimurium LT2 # 1 588 1 588 588 1125 96.0 0 MKAAAKTHKPKRQEEQANFVSWRFALLCGCILLALGFLLGRVAWLQIIAPDMLVRQGDMR SLRVQEVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGVSVGERWRALSTALNLP LDQLASRINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTQKDVMRNRTIT DVFEPGSTVKPMVVMTALQRGVVRENTVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG LMVTPLQLARVYATIGSYGVYRPLSITKVDPPVPGERIFPEATVRTVVHMMESVALPGGG GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY YGGAVSAPVFGAIMGGVLRTMNIEPDALATGDKNEFVNNQGEATGGRS >gi|283548477|gb|GG730300.1| GENE 614 682802 - 684289 1539 495 aa, chain + ## HITS:1 COG:murE KEGG:ns NR:ns ## COG: murE COG0769 # Protein_GI_number: 16128078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Escherichia coli K12 # 1 495 1 495 495 882 93.0 0 MADRNLRDLLAPWVPGAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGK TTTTQLLAQWCQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVG AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIE SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKTTVVVDYAH TPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEE PRAIINDILAGMLDAGRAKVMEGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLD YSDRVTVARLLGVIA >gi|283548477|gb|GG730300.1| GENE 615 684286 - 685644 1504 452 aa, chain + ## HITS:1 COG:murF KEGG:ns NR:ns ## COG: murF COG0770 # Protein_GI_number: 16128079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Escherichia coli K12 # 1 452 1 452 452 734 88.0 0 MISVTLSQLAEILRGELKGGDLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDN GAGALLVSRALDTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTAA ILSRCGKTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAAL VNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQNIIGDRKVWRFS PNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAAALSMAVGATP EAVKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLSEMPGYRVLVVGD MAELGAESEACHVQVGEAAKTAGIDRVLSTGKLSQAISHASGVGEHFADKTALVAHLKAL IAEHQIITILVKGSRSAAMEEVVRALQENGTC >gi|283548477|gb|GG730300.1| GENE 616 685638 - 686720 1470 360 aa, chain + ## HITS:1 COG:STM0125 KEGG:ns NR:ns ## COG: STM0125 COG0472 # Protein_GI_number: 16763515 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Salmonella typhimurium LT2 # 1 360 1 360 360 647 98.0 0 MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIARLQKMSFGQVVRND GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVVLVGYGIIGFVDDYRKV VRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATELVVPFFKDVMPQLGLFYVLLA YFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWATGNMNFANYLHIPYLRHAGELV IVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLLRQEFLLVIMGGVFVVE TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR >gi|283548477|gb|GG730300.1| GENE 617 686723 - 688039 1392 438 aa, chain + ## HITS:1 COG:STM0126 KEGG:ns NR:ns ## COG: STM0126 COG0771 # Protein_GI_number: 16763516 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Salmonella typhimurium LT2 # 1 438 1 438 438 805 94.0 0 MADYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVMDTRATPPGLDKLPEAVERHVGSLND DWLLAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT TLVGEMAKAAGVNVGVGGNIGLPALMLLDAERELYVLELSSFQLETTSSLQAVAATILNV TEDHMDRYPFGLQQYRAAKLRVYENAKVCVVNADDALTMPVRGADERCVSFGINMGDYHL NRQQGETWLRVKGEKVLNVKEMTLTGQHNYTNALAALALADAAGLPRASSLKALTTFTGL AHRFQLVLNHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFMPLQRYL TGDNIRLYCFGRDGAQLAALRPEAAEQTETMEQAMRLLAPRVKPGDMVLLSPACASLDQF KNFEQRGDVFTRLAKELG >gi|283548477|gb|GG730300.1| GENE 618 688039 - 689283 1430 414 aa, chain + ## HITS:1 COG:STM0127 KEGG:ns NR:ns ## COG: STM0127 COG0772 # Protein_GI_number: 16763517 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Salmonella typhimurium LT2 # 1 414 1 414 414 723 97.0 0 MRLSLPRLRLPRLPGLGVLAWVFAALKGWVMASRDKDADSLIMYDRMLLWLTFGLAAIGF IMVTSASMPVGQRLAGDPFLFAKRDALYIFLAFCLAMVTLRLPMEFWQKYSTTMLIASII MLLIVLVVGSSVNGASRWIALGPLRIQPAEFTKLSLFCYLANYLVRKVDEVRNNLRGFLK PMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAE PYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEVWGQGLGNSVQKLEYLPEAHTDFIF AIIGEELGYIGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMFLLRIDYETRLEKAQAFTRGAR >gi|283548477|gb|GG730300.1| GENE 619 689280 - 690347 1127 355 aa, chain + ## HITS:1 COG:murG KEGG:ns NR:ns ## COG: murG COG0707 # Protein_GI_number: 16128083 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Escherichia coli K12 # 1 355 1 355 355 626 93.0 1e-179 MSGQPKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIDIDFI RISGLRGKGVNALLAAPVRIFNAWRQARAIMKQFKPDVVLGMGGYVSGPGGLAAWSLGIP VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQERLAGRE GPVRVLVVGGSQGARVLNQTMPQVAARLGDAVAVWHQSGKGAQQTVEQAYADAGQPQHKV TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA AKILEQPQFTVDAVASTLAGWSRETLLTMAERARAASIPDATERVANEVSRAARA >gi|283548477|gb|GG730300.1| GENE 620 690399 - 691874 1463 491 aa, chain + ## HITS:1 COG:STM0129 KEGG:ns NR:ns ## COG: STM0129 COG0773 # Protein_GI_number: 16763519 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Salmonella typhimurium LT2 # 1 491 1 491 491 869 96.0 0 MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQL TNLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRH GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHSRYLIAEADESDA SFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL PRVGRQTTTYGFSDDADVRVEDYQQIGPQGHFTLVRQGMADLRVTLNAPGRHNALNAAAA VAVATEEGIEDEAILRALESFQGTGRRFDFLGEFPLEPVNGKTGTAMLVDDYGHHPTEVD ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAAIPGA DSRSLCRTIRGRGKIDPILVSDPALVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL KPQNPEEEQHG >gi|283548477|gb|GG730300.1| GENE 621 691867 - 692787 1147 306 aa, chain + ## HITS:1 COG:ddlB KEGG:ns NR:ns ## COG: ddlB COG1181 # Protein_GI_number: 16128085 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Escherichia coli K12 # 1 306 1 306 306 529 91.0 1e-150 MADKIAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFI ALHGRGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRA EFEKGLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGALALAFQHDEEVLIE KWLSGPEFTVALLGEEILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQEL VLKAWTALGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR ILELAD >gi|283548477|gb|GG730300.1| GENE 622 692789 - 693622 531 277 aa, chain + ## HITS:1 COG:STM0131 KEGG:ns NR:ns ## COG: STM0131 COG1589 # Protein_GI_number: 16763521 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Salmonella typhimurium LT2 # 1 265 1 264 276 494 94.0 1e-139 MSQAALNTRNGDEEDVNSSRRNNGTRLAGILFLLTVLCTVFVSGWVVLGWMEDAQRLPLS KLVLTGERHYTRNDDIRQSILALGAPGTFMTQDVNIIQSQIERLPWIKQASVRKQWPDEL KIHLVEYVPIARWNDQHMVDAEGNTFSVPAGRANKQVLPMLYGPEGSASEVLQGYRDMGQ VLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTIKRLARFVELYPVLQQQAQTDGK RISYVDLRYDSGAAVGWVPLPPEQSNQQQNQAQAEQQ >gi|283548477|gb|GG730300.1| GENE 623 693619 - 694881 1169 420 aa, chain + ## HITS:1 COG:ECs0098 KEGG:ns NR:ns ## COG: ECs0098 COG0849 # Protein_GI_number: 15829352 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Escherichia coli O157:H7 # 1 420 1 420 420 812 99.0 0 MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL KVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA PLNITGLTDYAQEPYYSTAVGLLHYGKESHLSGEAEVEKRVTASVGSWIKRLNSWLRKEF >gi|283548477|gb|GG730300.1| GENE 624 694944 - 696095 1592 383 aa, chain + ## HITS:1 COG:ECs0099 KEGG:ns NR:ns ## COG: ECs0099 COG0206 # Protein_GI_number: 15829353 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Escherichia coli O157:H7 # 1 383 1 383 383 636 98.0 0 MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI GSGITKGLGAGANPEVGRNAADEDREALRAALDGADMVFIAAGMGGGTGTGAAPVVAEVA KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND NTPQTTKEPDYLDIPAFLRKQAD >gi|283548477|gb|GG730300.1| GENE 625 696196 - 697113 882 305 aa, chain + ## HITS:1 COG:STM0134 KEGG:ns NR:ns ## COG: STM0134 COG0774 # Protein_GI_number: 16763524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Salmonella typhimurium LT2 # 1 305 1 305 305 625 98.0 1e-179 MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI EELSSAKKFVRIKETVRVEDGDKWAEFKPYNGFTLDFTIDFNHPAIDSSTQRYAMNFSAD AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP STVLA >gi|283548477|gb|GG730300.1| GENE 626 697396 - 697902 260 168 aa, chain + ## HITS:1 COG:no KEGG:EFER_0119 NR:ns ## KEGG: EFER_0119 # Name: secM # Def: SecA regulator SecM # Organism: E.fergusonii # Pathway: Protein export [PATH:efe03060]; Bacterial secretion system [PATH:efe03070] # 1 168 18 185 185 262 82.0 5e-69 MSGILTRWRQLGRRYFWPHLLLGMVAAGFGLPALGNAAEPNAPAKATASNHDQSAKVNFN QLALLEATNRRPNFTVDYWHQHAIRTVIRHLSFAMAPQALPVAEEPLPIQAHHLALLNTL SAMLTQEGRPPATVSRVTYAHFTSQAAFSVPVWISQLQGIRAGPQRLS >gi|283548477|gb|GG730300.1| GENE 627 697964 - 700669 3390 901 aa, chain + ## HITS:1 COG:STM0136 KEGG:ns NR:ns ## COG: STM0136 COG0653 # Protein_GI_number: 16763526 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Salmonella typhimurium LT2 # 1 901 1 901 901 1664 95.0 0 MLIKLLTKVFGSRNERTLRRMRKVVNIINAMEPEMEKLSDDELKAKTAEFRARLEKGASV ESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEMRTGEGKTLTATLPAYLNA LSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMTVGINMSGLPAPAKREAYNADITYGTNN EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKKVN KIIPHLIRQEKEDSDTFQGEGHFSVDEKARQVNLTERGLVLIEELLVNEGIMDEGESLYS PGNIMLMHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK EGVEIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR KDLPDLVYMTEAEKIQAIIEDIKERTANGQPVLVGTISIEKSEVVSNELNKAGIKHNVLN AKFHANEAAIVAQAGYPSAVTIATNMAGRGTDIMLGGSWQAEVAELENPTPEQIAQIKAE WQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSGRQGDSGSSRFYLSMEDALMRIFAS DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLEMPI SEWLDKEPELHEETLRERILANAVEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFASMLESLKYEVISTLSKVQVRMPEEVEAM EQQRREEAERLAQMQQLSHKGDDSAAAEELAAQTGDRKVGRNDPCPCGSGKKYKQCHGRL S >gi|283548477|gb|GG730300.1| GENE 628 700720 - 701115 368 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631237|ref|ZP_00156775.1| COG0494: NTP pyrophosphohydrolases including oxidative damage repair enzymes [Haemophilus influenzae R2866] # 1 129 1 129 136 146 50 2e-33 MNMKILQIAVGIIRNQHHEIFITQRAADAHMANKLEFPGGKIEAGETPEQALIRELQEEV GITPTQSSLFEKLEYQFPDRHITLWFWLVERWNGEPWGKEGQPSQWIAQSELNAEDFPPA NAPVIEKLIAG >gi|283548477|gb|GG730300.1| GENE 629 701282 - 701476 209 64 aa, chain - ## HITS:1 COG:ECs0105 KEGG:ns NR:ns ## COG: ECs0105 COG3024 # Protein_GI_number: 15829359 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 64 1 64 65 103 89.0 8e-23 MSEQTIVNCPTCGKPVVWAEVSPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS EEQK >gi|283548477|gb|GG730300.1| GENE 630 701486 - 702229 651 247 aa, chain - ## HITS:1 COG:STM0139 KEGG:ns NR:ns ## COG: STM0139 COG4582 # Protein_GI_number: 16763529 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 247 1 247 247 452 93.0 1e-127 MHTQVLFEHPLNEKMRTWLRIEFLIQQLSVNLPIADHAGALHFFRNIGDLLDVFERGEVR TELLKELERQQRKLQAWVEVPGVDQSRIDALRQQLKSAGSILISAPRIGQTLREDRLIGL VRQRLSIPGGCCSFDLPTLHIWLHLAQSHRDAQVESWLASLNPLNQALSLVLDLIRNSAP FRKQTSLNGFYQDNGEDADLLRLQLPLDSQLYPQISGHKSRFAIRFMPLDSENGLVPERL DFDLACC >gi|283548477|gb|GG730300.1| GENE 631 702229 - 702849 524 206 aa, chain - ## HITS:1 COG:ECs0107 KEGG:ns NR:ns ## COG: ECs0107 COG0237 # Protein_GI_number: 15829361 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Escherichia coli O157:H7 # 1 206 1 206 206 330 88.0 1e-90 MRYTVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGTPALKAIEEHFGSEVIA ADGSLQRRILRERIFSSPEEKSWLNALLHPLIQQETQRQFQQATSPYLLWVVPLLVENAL YKKANRVLVVDVTPETQLRRTMQRDDVTREHVEQILAAQATREARLAVADDIIDNNGAPE AIASDVARLHALYLQCALQFVSQEKP >gi|283548477|gb|GG730300.1| GENE 632 703075 - 704118 1022 347 aa, chain + ## HITS:1 COG:guaC KEGG:ns NR:ns ## COG: guaC COG0516 # Protein_GI_number: 16128097 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Escherichia coli K12 # 1 347 1 347 347 667 94.0 0 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQTWSGVPIIAANMDTVGTF AMAKALASFDILTAVHKHYSVEDWSAFIAETSADVLKHVMVSTGTSDADFEKTKQILALN PALNFICIDVANGYSEHFVQFVSKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGCTMPGDVAKAFGGGADFVM LGGMLAGHEESGGKIVEENGEKFMLFYGMSSESAMTRHVGGVAQYRAAEGKTVKLPLRGP VDNTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRVFNSL >gi|283548477|gb|GG730300.1| GENE 633 704153 - 705355 637 400 aa, chain - ## HITS:1 COG:STM0142 KEGG:ns NR:ns ## COG: STM0142 COG1459 # Protein_GI_number: 16763532 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Salmonella typhimurium LT2 # 1 400 1 400 400 541 70.0 1e-153 MSAKQLWRWQGINNEGEPLAGVLWADTRLSLIHALEQQRMTPLRIKRMRVKNSHWSRERS AETIHQLATLLKAGLTLSTGLSLLAEQHPSSQWQALLRTLAYDMEQGISLSTSLSHWQHV FPPLYQAMIRTGELTGKLDDCCFELARQQKHQQQLADKVKKALRYPIIIITMAVMVVFAM LQFVLPEFAAIYRTFNTPLPTLTRWIIAIAYYSRQWGWLAVAFSMVSVIAYHPIKQKPYW RILRQKLLLSIPVIGSMIRGQKLTQIFTVLALTQNAGIPFLQGLESVMETLASPFWSQRL AQVHHDISAGKPVWVALKNCGEFSPLCIQLVRTGEASGSLDAMLRNLAHHHGEKTLSQAE NLAALLEPALLVITGLIIGTLVVAMYLPIFHLGDAMSGVG >gi|283548477|gb|GG730300.1| GENE 634 705345 - 706727 717 460 aa, chain - ## HITS:1 COG:ECs0111 KEGG:ns NR:ns ## COG: ECs0111 COG2804 # Protein_GI_number: 15829365 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Escherichia coli O157:H7 # 1 458 1 459 461 691 76.0 0 MNTTQLTALCQRYQGILLDADNEVVHIAVVDAPSHELLDALHFATTRRINIVCWTRQQME GHTHTPQKMLPVVVTESSATAAGLLNQTFQSALAQRASDIHFEPAEHCYRIRLRVDGVLH ALPEVTTEMGVAITARLKVLGSLDIAEHRLPQDGQFTVEISGKPISFRISTLPCRWGEKV VLRLLHQVDQTLDITALGMADAQRAAFSQALQQPQGLILVTGPTGSGKTVTLYSALQTRN TLDVNLCSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDIIMVGEIRDGETAE IALKAAQTGHLVLSTLHTNSTNETLVRLQQMGVARWMIASALTLVIAQRLVRKLCPHCRQ RLETSITLPEAIWPTPLPRWHAPGCEHCYHGFYGRTALFEVLPVTPALRQSIASGTSADG VTSDALLSGRTLFENGCQAVEQGLTTYEELIRVLGMPHVS >gi|283548477|gb|GG730300.1| GENE 635 706737 - 707174 469 145 aa, chain - ## HITS:1 COG:ECs0112 KEGG:ns NR:ns ## COG: ECs0112 COG4969 # Protein_GI_number: 15829366 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, major pilin PilA # Organism: Escherichia coli O157:H7 # 1 143 1 143 146 272 92.0 1e-73 MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH GGTETCDAGTNGIPSPTTTRYVSGMSVEKGVVSLTGQESLNGLSITMTPGWDNANGITGW SRNCAIQSDSALQQACEDVFRFDTH >gi|283548477|gb|GG730300.1| GENE 636 707404 - 708297 442 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 22 295 10 283 286 174 36 6e-42 MPPRRYNPDYRRDALLERINLDIPAAVAQALREDLGGEVDANNDITAQLLPEDMRSHATV ITRENGVFCGKRWVEEVFIQLAGDDVNITWHVEDGDSIKANQPLFELDGPSRVLLTGERT ALNFVQTLSGVASEVRKYVDLLAGTKTQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLS DAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVESLDELDDALKAGADIIMLDNFET EQMREAVKRTNGQARLEVSGNVTHETLREFAETGVDFISVGALTKHVRALDLSMRFR >gi|283548477|gb|GG730300.1| GENE 637 708385 - 708948 444 187 aa, chain + ## HITS:1 COG:STM0146 KEGG:ns NR:ns ## COG: STM0146 COG3023 # Protein_GI_number: 16763536 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Salmonella typhimurium LT2 # 1 187 1 187 187 359 90.0 2e-99 MLLDEGWLAEARRVPSPHYDCRPDDETPSLLVVHNISLPPGEFGGPWIDALFTGTIDPNA HPFFAEIAHLRVSAHCLIRRDGEVVQYVPFDKRAWHAGVSNYQGRERCNDFSIGIELEGT DTLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTDPGPSFDWARFRALVTP SSHKEMT >gi|283548477|gb|GG730300.1| GENE 638 708945 - 709799 977 284 aa, chain + ## HITS:1 COG:STM0147 KEGG:ns NR:ns ## COG: STM0147 COG3725 # Protein_GI_number: 16763537 # Func_class: V Defense mechanisms # Function: Membrane protein required for beta-lactamase induction # Organism: Salmonella typhimurium LT2 # 1 284 1 284 284 470 88.0 1e-132 MTLFTTLLVLIIERLFKLGEHWQLDHRVEAFFRRIKHFSMMRTVGMTLIAMGVTFLLLRA LHGLLFNVPLLAAWILIGLLCIGAGKARLHYHAYLNAAARDDAHAREAMASELTLIHGVP PDCDEREFLRELQNALLWNNFRFYLAPLFWLIVGGPWGPVTLVGYAFLRAWQSWLARYQT PHQRLHSGIDAILHVLDWIPVRLAGVVYALLGHGEKALPAWFASLADLHTSQYQVLTRLA QFSLAREPHTDKVETPKAAVAMAKKTSFVVVVIIALLTIYGTLI >gi|283548477|gb|GG730300.1| GENE 639 709894 - 710844 983 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020424|ref|YP_526251.1| ribosomal protein L11 methyltransferase [Saccharophagus degradans 2-40] # 6 311 5 310 314 383 57 1e-104 MKQWPNPFIEQRADPFILRDGSHYYFIASVPEYDRLEIRRADSLEGLRSATPVVVWRKPE SGPMSQLIWAPEIHRLAGKWYIYFAATHTQALDKLGMFQHRMFALECADADPLTGKWTEK GQIKTQFDTFALDATTFNHQGKQWYLWAQKSPDIAGNSNIYLAELENPWTIKGETVMLSH PEYDWECRGFWVNEGPAVVLHGDKLFISYSASATDENYCMGLLWIDLNDDPLNPQSWHKS PRPVFTTSYENRQYGPGHNSFTQTPEGEDVLVYHARNYTEIEGDPLYDPNRHTRLKLVRW DENGMPDFGVPPADTI >gi|283548477|gb|GG730300.1| GENE 640 710844 - 712250 1538 468 aa, chain - ## HITS:1 COG:STM0149 KEGG:ns NR:ns ## COG: STM0149 COG2211 # Protein_GI_number: 16763539 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Salmonella typhimurium LT2 # 1 468 1 468 468 798 88.0 0 METSKLTVKEKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAV TDPIMGAMADRTRSKYGRFRPWLLWMAFPYALFSVLMFTTPEWTYNSKVIYAFVTYFLLS ITYTAINIPYCSLGSVITNDPKERVACQSYRFVLVGIATLLLSLTLLPMADWFGGADKAK GYQMAMAVLAFIGMCMFLFCFASVRERVRPAVQTNDDLKADLKDVWKNDQWVKILLLTLC NVCPGFIRMAATMYYVTWVMQQSTQFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFW TNIILAIFSGAFYFFDPKATMMIMVLYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRI TGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDAGAKAQSDSAINGIMLLFTIIPGVGYL ITAGVVRLLKVDREFMQQIQADLEKRRANYRELNEYHDTKTTEPVRKA >gi|283548477|gb|GG730300.1| GENE 641 712408 - 713778 1723 456 aa, chain - ## HITS:1 COG:aroP KEGG:ns NR:ns ## COG: aroP COG1113 # Protein_GI_number: 16128105 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Escherichia coli K12 # 1 456 2 457 457 795 94.0 0 MESQPHGDQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFL IMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFSSGWNYWVLYVLVAMAELTAVGKYIQFW YPEIPTWVSAAAFFVLINAINLTNVKVFGEMEFWFAIIKVIAVVAMILFGGWLLFSGNGG PQASVSNLWSQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV IYRILIFYVGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYN SCVYCNSRMLFGLAQQGNAPKALMNVDKRGVPVNTILVSALVTALCVLINYLAPESAFGL LMALVVSALVINWAMISLAHMKFRKAKQQQGVTTRFPALFYPLGNWVCLLFMAAVLVIML MTPGMAISVYLIPVWIGILGIGYLCKQKTAKVVKAH >gi|283548477|gb|GG730300.1| GENE 642 714346 - 715110 633 254 aa, chain + ## HITS:1 COG:ECs0117 KEGG:ns NR:ns ## COG: ECs0117 COG2186 # Protein_GI_number: 15829371 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 254 1 254 254 397 97.0 1e-110 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDLLETRHALEGIAAYYAALRST DEDKTRIRELHHAIELAQQSGDLDGESDAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN VRQNFELLYARREMLPLVSSHRTRIFEAIIAGKPEEAREASHRHLAFIEEILLDRSREES RRERALRRLEQRKN >gi|283548477|gb|GG730300.1| GENE 643 715395 - 718058 3368 887 aa, chain + ## HITS:1 COG:STM0152 KEGG:ns NR:ns ## COG: STM0152 COG2609 # Protein_GI_number: 16763542 # Func_class: C Energy production and conversion # Function: Pyruvate dehydrogenase complex, dehydrogenase (E1) component # Organism: Salmonella typhimurium LT2 # 1 887 1 887 887 1781 96.0 0 MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEARKGGVKVAAGAGASNY VNTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATVYDV CFNHFFRARNEQDGGDLVYFQGHISPGIYARAFLEGRLTEEQMNNFRQEVHGKGLSSYPH PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIVNELEGIFAGAGWNVIKVMWGGRWD ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWSL NRGGHDPKKVYAALKKAQETKGKATVILAHTIKGYGMGDTAEGKNIAHQVKKMNMDGVRY IRDRFNVPVTDEQVENLSYITFPEGSEEHTYLHAQRQKLHGYLPARQPNFTEKLELPALE DFSALLEEQNKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGASWLAAATSYSTNDLPMIPFYIYY SMFGFQRIGDLCWQAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD PSYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLETL EGKKGKVQLLGSGSILRHVREAAQILANDYGVGSDVYSVTSFTELARDGQDCERWNMLHP METPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH HFEVDASYVVVAALGELAKRGEIDKKVVADAITKFNIDADKVNPRLA >gi|283548477|gb|GG730300.1| GENE 644 718073 - 719971 1852 632 aa, chain + ## HITS:1 COG:STM0153 KEGG:ns NR:ns ## COG: STM0153 COG0508 # Protein_GI_number: 16763543 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Salmonella typhimurium LT2 # 1 632 1 629 629 918 93.0 0 MAIEINVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS VGDKTETGKLIMIFDSADGAAAAAPAPAEEKKEAAPAAAPAASAAKEVHVPDIGGDEVEV TEVMVKVGDTVAAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVSTGSLIMVFEVA GAAGAAAPAKAEAAPAAAAAPAASGSKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT VEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIMVFEVEGAAPAAAPAAAAAPAPAAA PAQAAKPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGSGRKGRILRE DVQAYVKDAIKRAEAAPAAAAGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSR NWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKRKLDVKFTPVVFIMKAVAAALEQMPRFN SSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKSITELSRELTTISKKARDGKL TAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSSMEPVWNGKEFMPRLMMPIS LSFDHRVIDGADGARFITIINNMLSDIRRLVM >gi|283548477|gb|GG730300.1| GENE 645 720147 - 721571 688 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 6 452 3 444 458 269 34 2e-70 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCLNVGCIPSKALLHVA KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGLAGMAKGRKVKVVNGLGKFT GANTLEVEGENGKTVINFDNAIIAAGSRPIELPFIPHEDPRVWDSTDALELKTVPKRLLV MGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTA VEAKEDGIYVSMEGKKAPSEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGE LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK >gi|283548477|gb|GG730300.1| GENE 646 721841 - 722125 326 94 aa, chain + ## HITS:1 COG:no KEGG:KP1_0945 NR:ns ## KEGG: KP1_0945 # Name: not_defined # Def: putative secreted protein # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 93 1 93 94 119 73.0 4e-26 MKRFLKAAVMTTVFISGMALAQDAVIPWATNSGGTESTHIAAMGQNLNAQHQQISQTQEG VWATNSGSIQADEAALTSTKPAFKGYPELMPHQN >gi|283548477|gb|GG730300.1| GENE 647 722335 - 723066 943 243 aa, chain + ## HITS:1 COG:no KEGG:ESA_03219 NR:ns ## KEGG: ESA_03219 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 243 1 243 243 350 91.0 3e-95 MSLKKIAVVGMVVATMTLTGCGAMTTAVKKRNLEVKTQMSETIWLEPSSEKTVYIQVKNT SDKDMSNLQTLLANDLSAKGYKVTSSPDSAYYWVQANVLKADKMDLREAQGFLKTGYEGA AMGAALGAGITAYNSNSSGAALGVGLAAGLIGMAADAMVEDVNYTMVTDLQISERSKAKV TTDNVAALRQGTSGIKLQTSSAQGDRAKYQTRVVSNANKVNLKFEEAKPVLEAQLAKSVA NIL >gi|283548477|gb|GG730300.1| GENE 648 723133 - 723924 656 263 aa, chain - ## HITS:1 COG:no KEGG:Ent638_0663 NR:ns ## KEGG: Ent638_0663 # Name: not_defined # Def: putative periplasmic protein # Organism: Enterobacter_638 # Pathway: not_defined # 2 263 3 264 264 374 68.0 1e-102 MKKIMLSALLLSLPFMSYAQQAFTSPEDAASAFATAVAQQNEAQLTALLGDNWRHFLPPE GADPEAIARFNRDWKISHHIVQQDNMAHLNVGQENWQLPIPMVKTSKGWQFDMAEAQEEI LTRTIGRNELSAIEALHAYVDAQQSYYALNQSYAQKIVSSEGKKDGLYWPVSPGETPSPL GPAFSPQEPGAGYHGYRFRIIPDKASGFAMVAWPVDYGQTGIMSFMISGDDTVYQANLGE ASQQKAQALSEYNPDKTWQAVTP >gi|283548477|gb|GG730300.1| GENE 649 723937 - 725583 897 548 aa, chain - ## HITS:1 COG:no KEGG:SG0159 NR:ns ## KEGG: SG0159 # Name: yacH # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 548 1 540 540 666 80.0 0 MTLPFKPHIIALACSAGLFVGAGVLYVKSRTPEAPEQPAPAAVAPQAPVAATPAAPAAPA TYTTAQLDQWVAPIALYPDPLLSQVLMASTYPSNVVQAVQWSRDNPTLQGDAAIKAVSGQ SWDPSVKSLVAFPQLMALMGENPDWVQNLGNAFLAQPQDVMDAVQRLRLLAQQTGSLKSS PQQTVTTSMKNLPPPRTQTQEGVTIQSTAPPAPPVIKIEPTDPQVVYVPNYNPSVVYGSW PNTAYPPVYLPPPPGEQFADSFVRGFGYSLGVATTYALFSNIDWDDDDHHHDDDHHDHDN GGPHGGNGYQHNGDNININVNNFNRISGQNIKGQTMGWQHNPAYRDGVPYQNNAVAQRFH QTNVSGGLSSTQHTPATSATRDSQRQAAMTQFQQRTHTSPANLSGETSRDSQRKAASQQL NQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRSELKAKAQQHPVSQQQRDTARQR IESSTPQQRQSFRQEMHANAFSGNDSRSPSWQSQQLRGQESRRIGNINTGQRAAARENFS EHHEFRRR >gi|283548477|gb|GG730300.1| GENE 650 725984 - 728581 3570 865 aa, chain + ## HITS:1 COG:STM0158 KEGG:ns NR:ns ## COG: STM0158 COG1049 # Protein_GI_number: 16763548 # Func_class: C Energy production and conversion # Function: Aconitase B # Organism: Salmonella typhimurium LT2 # 1 865 1 865 865 1674 98.0 0 MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKNPPVGEEEFLSDLLINRVPPGVDEA AYVKAGFLAAVAKGDTTSPLVTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAARALS STLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKITVTVFKVTGETNTD DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGYPLAYVGDVV GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN LNMGDVIDVYPYSGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA LGLPHSDVFRQAKDVAESSRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM TRDELKDLACLGFSSDLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIH SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA ERSAAGCTIKLNKEPIVEYLNSNIVLLKWMIAEGYGDRRTLERRVQGMEKWLADPQLLEA DADAEYAAVIDIDLADIKEPILCAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIGHFRAA GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT YRYLNFDQLSQYTEKADGVIFQTAV >gi|283548477|gb|GG730300.1| GENE 651 728756 - 729118 459 120 aa, chain + ## HITS:1 COG:ECs0123 KEGG:ns NR:ns ## COG: ECs0123 COG3112 # Protein_GI_number: 15829377 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 120 17 136 136 199 90.0 1e-51 MDYEFLRDITGRVLVRMSMGHEVVGHWFNEEVKENLALLDEVEQAARAVKGSERSWQRAG HEYTLWLDGEEVMVRANQLEFSGDEMEEGMSYYDEESFSLCGVEDFLQVVAAYREFMQQR >gi|283548477|gb|GG730300.1| GENE 652 729152 - 729460 323 102 aa, chain - ## HITS:1 COG:no KEGG:ECSE_0122 NR:ns ## KEGG: ECSE_0122 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 102 55 156 156 204 98.0 1e-51 MAVCANSYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNY DTFNMKALGEDSYRDLSGIGIPTAKKCKALARDSLSLLAYVK >gi|283548477|gb|GG730300.1| GENE 653 729653 - 731257 1397 534 aa, chain + ## HITS:1 COG:STM0168 KEGG:ns NR:ns ## COG: STM0168 COG2132 # Protein_GI_number: 16763558 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Salmonella typhimurium LT2 # 1 534 1 536 536 959 87.0 0 MQRRDFLKYSVALGVASALPLWSRTVFAADRPALPIPDLLTADAANRIPLIVKAGQSTFA GKTATTWGYNGNLLGPAVKLNKGQAVTADIHNQLAEETTLHWHGLEIPGEVDGGPQGIIP AGGKRSVTFTPQQRAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDEIGKLQLPKQWGIDD VPVIIQDKQFSADGQINYQLDMMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN ARSLNIAASDNRPLYVIASDGGLLAEPVKVTELPMLMGERFEVLVDVSNGKAFDLVTLPV SQMGMAVAPFDKPHPVMRVQPLRVTASATLPDTLTSMPSLPSLDGLTVRKLQLSMDPMLD MMGMQMLMKKYGGQAMAGMDHGKMMGHMNSDNMGHGNMSHGDMGNMKHGNMGNMNHNGQF DFHNANRINGQAFDMNKPMFAAAKGQHERWVISGQGDMMLHPFHIHGTQFRILSENGKAP AAHRAGWKDTVRVEGGVSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV >gi|283548477|gb|GG730300.1| GENE 654 731360 - 733762 2523 800 aa, chain - ## HITS:1 COG:STM0169 KEGG:ns NR:ns ## COG: STM0169 COG4993 # Protein_GI_number: 16763559 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose dehydrogenase # Organism: Salmonella typhimurium LT2 # 5 800 1 796 796 1445 93.0 0 MVFFMANNNVRSQGLVVTLSALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLGVALL LWRSKRSALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWHRLIVP SSGAVTALVVALLISSGILTWAGFNDPQEVHGTLSADTTPAEAISQVADPDWPAYGRNQE GQRYSPLKQINADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRL FALDAASGKEKWHFDPQLNTNTSFQHVTCRGVSYHEARADNASPEVIADCPRRILLPVND GRLFALNAETGKLCETFANKGILNLQTNMPDTSPGLYEPTSPPIITDKTIVIAGSVTDNY STRETSGVIRGFDVNNGKLLWAFDPGAKDPNFIPSDEHTFTFNSPNSWAPAAYDAKLDLV YLPMGVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLA DITVKGEKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVSKTQPFSDLS FRPKKDLSGADMWGATMFDQLVCRVMFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGIS VDPNRQVAIANPMALPFVSKLIPRGPGNPMEPLKDAKGTGTESGIQPQYGVPFGVTLNPF LSPFGLPCKQPAWGYISAVDLKTNDVVWKKRIGTPQDSMPFPMPIPVPFNMGMPMLGGPI STAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHG SFGTKMGDYIVAYALPDNTK >gi|283548477|gb|GG730300.1| GENE 655 733954 - 734490 850 178 aa, chain + ## HITS:1 COG:ECs0129 KEGG:ns NR:ns ## COG: ECs0129 COG0634 # Protein_GI_number: 15829383 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Escherichia coli O157:H7 # 1 178 5 182 182 330 97.0 1e-90 MKHTVEVMIPEAEIKARIAELGRQINERYKDSGSDMVLVGLLRGSFMFMADLCREVHVSH EVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP KSLAICTLLDKPSRREVDVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYVGKVVLLDE >gi|283548477|gb|GG730300.1| GENE 656 734587 - 735309 621 240 aa, chain - ## HITS:1 COG:yadF KEGG:ns NR:ns ## COG: yadF COG0288 # Protein_GI_number: 16128119 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli K12 # 21 240 1 220 220 431 92.0 1e-121 MLELPYISPSNLSGFGLYNSMKDIDTLISNNALWSKMLVEEDPGFFETLTHAQNPRFLWI GCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYG CGGVQAAIENKEQGLIDNWLLHIRDIWFKHSSLLGEMPQERRIDTLCELNVMEQVYNLGH STIMRSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATSRETLEQRYRQGLSNLSQKHSNHK >gi|283548477|gb|GG730300.1| GENE 657 735358 - 736284 960 308 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 302 1 304 311 374 64 1e-102 MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG RVSVFGYDLDKDTVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVEHKEAVKRSEIY LKQLDLWEKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKNLLSKLKSETFILDLAAKS PLPKLEGYQYRLVDTSTLEVEVLREQGVNSVFAQLSAQGIQVLSMRNKANRLEELFVSLV HEKQGDRA >gi|283548477|gb|GG730300.1| GENE 658 736281 - 737051 1063 256 aa, chain + ## HITS:1 COG:STM0173 KEGG:ns NR:ns ## COG: STM0173 COG0842 # Protein_GI_number: 16763563 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 256 1 256 256 431 98.0 1e-121 MMQLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGEMHGFSYMQ FIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGFVGGGVARGLCV GILVTAVSLFFVPFQVHSWVFVALTLVLTAILFSLAGLLNAVFAKTFDDISLIPTFVLTP LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGIHDVPLVTTFGVLVVFIAAF YLLCWYLIQRGRGLRS >gi|283548477|gb|GG730300.1| GENE 659 737155 - 737595 404 146 aa, chain + ## HITS:1 COG:STM0178 KEGG:ns NR:ns ## COG: STM0178 COG2893 # Protein_GI_number: 16763568 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 146 1 146 146 252 82.0 2e-67 MLGWVITCHDDKAQDMLHRLEQKYGPLAQCQAISFWRGLSSNMLSRMMCHALHATDSGEG VIFLTDTAGAAPYRVASLMSHKHPQCEVISGVSYSLLEQMISSRESMSSSAFRDSIVALG GPEVSSLWHQQQKNPPFVLKHDLYEY >gi|283548477|gb|GG730300.1| GENE 660 737662 - 738891 990 409 aa, chain + ## HITS:1 COG:STM0179 KEGG:ns NR:ns ## COG: STM0179 COG0726 # Protein_GI_number: 16763569 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Salmonella typhimurium LT2 # 1 409 1 409 409 735 85.0 0 MVMRVLLVLLLLSSGSVAAALPARYMQTTEAAAVWAQIGNKMVTVGNIRAGQILAVEPIA ADYYEFTFGFGTGFIDKGHLESVQGRQKVDDGLGDLNKPLSNQSLITWKDTPVYNAPDVG SAPFGVLADNLRYPIISKLKDRLNQTWFQIRIGDRLAYISALDAQEDHGIPVLTYHHILR DEENTRFRHTSTTTSVRAFSNQMAWLRDRGYTTLTMYQLEDYVQNKMNLPARAVVLTFDD GLKSVSRYAYPVLKQYGMKATAFIISSRIKRHPQKWDPKSLQFMSVSELNGIRDVFDFQS HTHFLHRVDDRHRPILLSRSYHNILFDFARSRRALAQFNPHVLYLSYPFGGYNATAVEAA KEAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMSRLISNQPQG >gi|283548477|gb|GG730300.1| GENE 661 738892 - 739959 938 355 aa, chain - ## HITS:1 COG:no KEGG:SeHA_C0205 NR:ns ## KEGG: SeHA_C0205 # Name: not_defined # Def: putative fimbrial protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 65 354 64 352 353 78 29.0 4e-13 MKYLLYLLALLLPGVCSAECHLAKNGVPGDLLINGGSTGSPLNFYSVYGDTSSTVHELDY FDPSLSHDLWSYCDNGPNGDDFYMYTNNGSDVIETDGRALFPTNVDGIYYAVKLFSTAGA GGYFPSTTGSWINVYPSSESDWDSKQVKATITLYQMSAFPGNVKNVSYLTPKDSRTLGQI RVGTADSDDNNPWTVKVSTASFSVPISAATCSSVSGNDGTNNVDFGDVMYSSLREYYWQR KTLTLKLAGCTNTVWFRFKLASSKYAVDSQNNMLLTNPLTGSDAASGVGVLLQADFPIQG TKDVFSPGLEIWTPTTIVSNARTYNYNFITTMQLSGETLKPGKFKAIGTFTIDYF >gi|283548477|gb|GG730300.1| GENE 662 739976 - 740590 493 204 aa, chain - ## HITS:1 COG:no KEGG:ECL_00937 NR:ns ## KEGG: ECL_00937 # Name: not_defined # Def: putative fimbrial protein # Organism: E.cloacae # Pathway: not_defined # 36 204 30 201 201 155 50.0 1e-36 MLFTLTRLRHLRPMLLITGLAAGAPCLAEETTMGELNVTMTANIVDNTCQISLSDNGEVH LPTVSRYWFYKIDGTTPRLQPNDAASGTRFSVNVESCDGKTDALQTMTFRFKPQSGSWPA ESKQVFMNETPTESGGAQNVGVVIFSSNDNRNVVDSNGDPVAMFAAAPDTYLASYDFYAR YQNTSAVISSGKVTSHVLVDAIYQ >gi|283548477|gb|GG730300.1| GENE 663 740612 - 741172 546 186 aa, chain - ## HITS:1 COG:no KEGG:ECL_00938 NR:ns ## KEGG: ECL_00938 # Name: not_defined # Def: putative fimbrial protein # Organism: E.cloacae # Pathway: not_defined # 3 186 4 180 180 150 51.0 2e-35 MNKLSILGGVIGTLLLSAPAFAITGTDSVSARFTTTIEAGTCTAEIQNATGKAVSELGFG DVFKSELVGKSRTVPFKIAFSNCAGVKSAELKIQAGTGGGCSGPAMDGDSFAGGNSTGFE VWKGDADSGTILSCNQTVTQPQTIAISGSAQDVDLTSRIVIAKSRTIANVTEGEVKAPVT FVVTYQ >gi|283548477|gb|GG730300.1| GENE 664 741195 - 741767 662 190 aa, chain - ## HITS:1 COG:yadM KEGG:ns NR:ns ## COG: yadM COG3539 # Protein_GI_number: 16128131 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 23 190 36 203 203 79 33.0 4e-15 MNIKKLYLLGCSSLLIATALPSLAVTLDVTFTANIRETTCDMAIEGGSGDGQNNTIPIGT GEKVSMDKIVNGDSAAQTTFKLKITECPSSLAALKTTVSGTQSALKNTALDNESTDSAAA SYIGLTIARTTTPDAPFVIGSTTDNERLVWSTTEIANKEVPLVATLIETSSGKGTTGPFS ALATFNFTYE >gi|283548477|gb|GG730300.1| GENE 665 741801 - 744314 2552 837 aa, chain - ## HITS:1 COG:ECs0143 KEGG:ns NR:ns ## COG: ECs0143 COG3188 # Protein_GI_number: 15829397 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli O157:H7 # 7 837 29 863 866 749 48.0 0 MAAEIPAASSDDVEFNDQFLFNTGTNIDVSRFSKGNPVPPGTYKTQIVVNNLPRTLTSVT FNDNGTFRATPCFNGKMLMQIGIKTDGLDLESDACVDLTKQYPQSSWEFDLGTQVLSVSM PQIYVLKNAGRYADPSLWEDGIPAAMFSYDINAWHAENSGQTTDSAYAGLKYGANLGAWH LRARGNLNWNQDNGSDYSSQDIYLQRDIARLRSQFLIGDSFTRGDSFNSFNLRGVRFYND DRMLPGGTSTYAPIIRGVANSNAKVTVTQSGSKIYETTVPPGPFEINDLSTTGYGSDLDV KIEEADGSIRTFSLPYSSVAQMLRPGYGRWDIGAGELNDDGLRSQPKLGYATGYYGLNNT FTGYAGVQYMDIGYTAGLLGLAANTPIGALAFDITHSRAAIDSLDTLTGQSYRLTWSTLL EDSQTSFNIAAYRFSTENYMTLSDAASLHDNIDNYNGQRNGRDASREEYTRFQRMKNQFQ VNISQPLSLWSTSGGSLYVSGSWQDYWNEDSSTSQYSIGYSDAFAWANYSLSLQRTYNEY GDKDDSVYLSLSIPLENLLGRSKRPLGFSTVNMSVNTDMKSNSTFNASANGSTSDALFNY SVNTSTNRSDSASINQIGGYGSYNSSVGPLSLSASASDDSSRQYSLSYSGGMLIHSGGLT LAPGSIGDTDTLALVHASGAKGARLTTGDGRINRFGYALQPYLSAYRQNTVGLNIDSMEA DVEVKNTSTIVIPRSGAVVKVEFATDEGRSLLMELRRSDNGFIPLGADVQNAQGESIGSV GQAGMAYVRGAQESGKLLVVWGAGKEGRCTVNYQITGEDATQKVGLTRLLSNQRCQM >gi|283548477|gb|GG730300.1| GENE 666 744424 - 745146 751 240 aa, chain - ## HITS:1 COG:ZecpD KEGG:ns NR:ns ## COG: ZecpD COG3121 # Protein_GI_number: 15799824 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli O157:H7 EDL933 # 19 238 20 242 243 223 49.0 2e-58 MNHFTRLSVTSLVCLTAGLSAFSARADIVISGTRVVYPQSSKDVTVKMENRGNKPLLVQS WLDDGRDTVNPQELKLPFIVTPPVTRIDPAKGQTVRITWTGQALPADRESLFWFNVLEVP PKGKEADAQNVLQLAFRTRIKMFYRPDGLAGDPALAAGKLQWAYHGNSLTANNSSPYFIS MSAATITINGKKIDVASHTIPPLTNETVPVKGSSNLAGGKVEYNTINDFGGTEKHQATIN >gi|283548477|gb|GG730300.1| GENE 667 745207 - 745818 641 203 aa, chain - ## HITS:1 COG:no KEGG:ECL_00942 NR:ns ## KEGG: ECL_00942 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 3 203 2 195 195 181 55.0 1e-44 MSMKKLTVAAAAIVVALSSASVFAEDDAPVLGTDVGLITFDGAVTDSTCKITTNNGVDAS NITITLPVVKKADVELASIDTGVGSKEFELNLSDCPDGMTAASAVFTSQQFAELSNGTLK ADPTVSGHAENVSLALYNNSTANTDRIQVGLPDNNTQVATVTGGVGQLAYRVAYVPSADW VKNTNDITSGKVSSNATFTMTYE >gi|283548477|gb|GG730300.1| GENE 668 746111 - 746491 518 126 aa, chain - ## HITS:1 COG:ECs0135 KEGG:ns NR:ns ## COG: ECs0135 COG0853 # Protein_GI_number: 15829389 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Escherichia coli O157:H7 # 1 126 1 126 126 235 96.0 1e-62 MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVNNGKRFSTYAI AAERGSKIISVNGAAAHNAAVGDIVIIASFVTMSDEEARTWRPNVAYFEGDNEMKRTAKA IPVQVA >gi|283548477|gb|GG730300.1| GENE 669 746584 - 747438 1040 284 aa, chain - ## HITS:1 COG:STM0181 KEGG:ns NR:ns ## COG: STM0181 COG0414 # Protein_GI_number: 16763571 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Salmonella typhimurium LT2 # 1 284 1 284 284 506 91.0 1e-143 MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEAKSRADVVIVSIFVNPM QFDRPDDLVRYPRTLQEDCEKLNKRKVDFVFAPAAPEIYPQGTEMQTFVEVPGLSTMLEG ASRPGHFRGAATIVSKLFNLIQPDIACFGEKDFQQLALIRKMVADMGYDIEIVGVPIIRA KDGLALSSRNGYLTAEQRKIAPGLYKVMTRIGEKLQAGERDRDEIIAIAEQELNEKGFRA DDIQIRDADTLLELTENSKRAVILVAAWLGQARLIDNQSVTLAQ >gi|283548477|gb|GG730300.1| GENE 670 747564 - 748355 953 263 aa, chain - ## HITS:1 COG:STM0182 KEGG:ns NR:ns ## COG: STM0182 COG0413 # Protein_GI_number: 16763572 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Salmonella typhimurium LT2 # 1 263 1 263 263 508 96.0 1e-144 MKPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGIDVMLVGDSLGMTIQGHDSTLPV TVEDIAYHTRAVRRGAPNCLLLSDLPFMGYATPEQAFENAATVMRAGANMVKIEGGAWLV DTVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDAGQTLLDDALALEAAGAQLLVLE CVPVELAKRVTEALSIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAEAGDMR AAVRQYMAEVESGVYPGEEHSFH >gi|283548477|gb|GG730300.1| GENE 671 748476 - 748967 213 163 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 5 143 119 255 278 86 35 2e-15 MQLERRRVYIAIGSNLASPLEQVNAAVQAIGEIPDSHIVAVSSFYRTPPLGPQDQPDYLN AAVALDTALAPEALLDHTQRIELQQGRVRKAERWGPRTLDLDIMLFGDEVIHTERLTVPH YDMKNRGFMLWPLFEIAPELIFPDGVSLHQYLTRLGAAKPAHW >gi|283548477|gb|GG730300.1| GENE 672 749078 - 750442 1426 454 aa, chain - ## HITS:1 COG:STM0184 KEGG:ns NR:ns ## COG: STM0184 COG0617 # Protein_GI_number: 16763574 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Salmonella typhimurium LT2 # 1 433 19 451 472 799 92.0 0 MLSREEREAELAVARPHMTVIPREQHSISRKDISENALKVMYRLNKAGYEAWLVGGGVRD LLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSE ADRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLEEGI IRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEAL KLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMERIIAQVLKNTDNRINNDMR VNPAFLFAAMFWYPLLEAAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTSLTR DIWQLQLRMSRRQGKRAWKLMEHPKFRAAYDLLALRAEVENNAELQRLAQWWGEFQVSAP PEQKGMLNELDEEPDVRRRHRRPRKRAPRREGSA >gi|283548477|gb|GG730300.1| GENE 673 750547 - 751443 713 298 aa, chain - ## HITS:1 COG:yadB KEGG:ns NR:ns ## COG: yadB COG0008 # Protein_GI_number: 16128137 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Escherichia coli K12 # 1 296 11 306 308 516 84.0 1e-146 MSDSHYIGRFAPSPSGELHFGSLIAALGSYLQARARRGIWRVRIEDIDPPREVPGAAEAI LRQLEHYGLHWDGDILWQSQRHEAYREALSWLHQQDLSYYCTCTRARIQSLGGIYDGHCR ELRHGPERAAVRIKQSHPVTQFTDLLRGVIQADPQLAGEDFIIHRRDGLFAYNLAVVVDD HFQGVTEIVRGADLIEPTVRQISLYQQFGWQAPDYIHLPLALNEQGAKLSKQNHAPALPQ GDPRPVIVAALRFLGQRADIPWQEMQVDQILQFAVENWSLTTVPESAIVNTPFSNAPR >gi|283548477|gb|GG730300.1| GENE 674 751513 - 751968 558 151 aa, chain - ## HITS:1 COG:ECs0149 KEGG:ns NR:ns ## COG: ECs0149 COG1734 # Protein_GI_number: 15829403 # Func_class: T Signal transduction mechanisms # Function: DnaK suppressor protein # Organism: Escherichia coli O157:H7 # 1 151 1 151 151 259 98.0 2e-69 MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFRRILEAWRNQLRDEVDRTVS HMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVE IGIRRLEARPTADLCIDCKTLAEIREKQMAG >gi|283548477|gb|GG730300.1| GENE 675 752146 - 752850 300 234 aa, chain - ## HITS:1 COG:ECs0150 KEGG:ns NR:ns ## COG: ECs0150 COG1489 # Protein_GI_number: 15829404 # Func_class: R General function prediction only # Function: DNA-binding protein, stimulates sugar fermentation # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 414 86.0 1e-116 MQFSPPLQPATLIQRYKRFLADVITPDGTTLTLHCPNTGAMTGCATPGDTVWYSTSENTK RKYPHTWELTQTQSGAFICVNTLWANRLAKEAIQQSLISEVSGYSVLKSEVKYGAEGSRI DFLLQADSRPDCYIEVKSVTLAEKEQGYFPDAITERGQKHLRELMSVAAEGKRAVIFFAV LHSAITRFSPARHIDTKYAQLLVEARQKGVEILVYKAELSAHDMTLKEPLPIIL >gi|283548477|gb|GG730300.1| GENE 676 752866 - 753396 403 176 aa, chain - ## HITS:1 COG:ligT KEGG:ns NR:ns ## COG: ligT COG1514 # Protein_GI_number: 16128140 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Escherichia coli K12 # 1 176 4 179 179 284 81.0 7e-77 MSEPKRLFFAIELPGEVREQLIHWRAAQFPPEAGRPVAAENLHLTLAFLGDVSAEKQQAL SQLAGRIRQPGFTLKLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ PFHPHITLLRDAGHAVPIPPPGFGWSFPVTGFTLYSSTFTRGRTRYAPLQRWTLTE >gi|283548477|gb|GG730300.1| GENE 677 753425 - 755899 2101 824 aa, chain + ## HITS:1 COG:ECs0152 KEGG:ns NR:ns ## COG: ECs0152 COG1643 # Protein_GI_number: 15829406 # Func_class: L Replication, recombination and repair # Function: HrpA-like helicases # Organism: Escherichia coli O157:H7 # 1 824 1 824 824 1303 86.0 0 MLQCSAKNVNPLEPFVTSLPVAAVVPELLTALDASPQVLLTAPTGAGKSTWLPLQLLEHP GIQGRIILLEPRRLAARNVAQRLAELLNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLT RMIQRDPELSGVSLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNGRLQ QMLPDAPMIISEGRTFPVERRYQPLAAHLRFDEAVAIATAELLRHEGGSLLLFLPGVGEI QRVQEQLASRVGSDVVLCPLYGALTLAEQRQAILPAPQGQRKVVLATNIAETSLTIEGIR LVVDCAQERVARFDARTGLTRLITQRISLASMTQRAGRAGRLEPGICLHLLAKEQAERGA AQGEPEIVQSDLSGLLMELLQWGCSDPAQLNWLDLPPAVNLQAAKRLLQMLGAVEGDRLS ARGQKMAALGNDPRLAAMLVSANNDTEAATAARLAAILEEPPRGGGTDLMAAFSRHQPAW QQRTQQLLKRLNVRDGQPDSVLLSSLLAQAFADRIARRRGQEGRYQLANGMGAMLDADDA FGRHEWLIAPLLLQGSASPDARILLALPLDIDALMQTCPALLQRSDTIEWDETQGTLKAL RRLRIGQLTVKVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLQCAANWLP EYAWPAVDDDSLLATLESWLLPHMSGVHSLRALKALNVGQALRGLLDWSMLQRLDSELPA HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAKTPTIAEGRVPLVLELLSPAQRPLQVT SDLSAFWQGSYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS >gi|283548477|gb|GG730300.1| GENE 678 756039 - 758579 3343 846 aa, chain + ## HITS:1 COG:STM0190 KEGG:ns NR:ns ## COG: STM0190 COG0744 # Protein_GI_number: 16763580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Salmonella typhimurium LT2 # 1 846 1 840 840 1487 92.0 0 MAGNDREPIGRKGKPSRPVKQKVSRRQLRDEEYDDDYDDDDYEDEEPMPRKGKGKGRKPR GKRGWFWLLVKLSIVFLVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPEMPIG KNEMVKLLEATQYRQVTKMTRPGEFTVQAKSIEMIRRPFDFPDSKEGQVRARLTFDGDHL DTIENMDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY NPWRNPKLALERRNLVLRLLQQQQIIDQDLYDMLSARPLGVQPRGGVISPQPAFMQMVRQ ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPVLKKQRKLSDLETAIVVVDRF SGEVRAMVGGAEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKLYRLNTWIADAPIAL RQPNGQVWSPQNDDRRYSESGKVMLVDALTRSMNVPTVNLGMALGLPAVTDTWLKLGAPK DQLNPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGTVLYQSFPQAER AVPAQAAYMTLWTMQQVVQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTI TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLVLTPPEDVVDMGVDYDGNFVCSGGM RTLPVWTTDPDSLCQQGEMQQQSGNPFDQSSQQPQQQQPQQQQPPQQEKKDSDGVAGWIK DMFGGN >gi|283548477|gb|GG730300.1| GENE 679 759200 - 759433 83 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291085381|ref|ZP_06352911.2| ## NR: gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] # 1 77 9 85 85 144 100.0 3e-33 MDAGSAPTQQADGIRRIARVATIFPPGAWDAREAAASLARSRVSVLQRKDEHEVNGTLSL GWHIHYFRQHRLILPET >gi|283548477|gb|GG730300.1| GENE 680 760229 - 762478 2364 749 aa, chain + ## HITS:1 COG:ECs0154 KEGG:ns NR:ns ## COG: ECs0154 COG1629 # Protein_GI_number: 15829408 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Escherichia coli O157:H7 # 1 749 1 747 747 1280 86.0 0 MARLKTAQPNSSLRKIAVLVATAVSGMSVYAQAAVQPKEETITVTAAPAAQESAWGPAAT IAARQSATATKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVAVGTRGASNTY DYLIIRGFAADGQSQNNYLNGLKMQGNFYNDAVIDPYMLERAEVMRGPVSVLYGKSNPGG LLNMVSKRPTTEPLKEVQFKMGTDSLFQTGFDFSDALDDDGVYSYRLTGLARSANAQQQG AEEQRYAIAPSFSWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVSKLPNGSRLPTDFN EGANNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRYAQNKVSQNSVYGYGMCSDPLYTKDP ANSPCASVPQSDWDHTLTRQYVIDNEKLQNFAVDTQLQSKFATADVDHTLLTGVDFMRMR NDIDSWFGYAGSVSPSDIYNLDRSDFDFGSHPGPSGPYRVLNKQKQTGLYVQDQMQWDKV LVTLGGRYDWAKQDSLNRVSGVQDSRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPASQ TGASGNIFAPSKGKQYEAGVKYVPSDRPIVLTGAVYQLTKTNNLMADPNGSLFSVEGGEI RSRGVEIEAKAALSASVNVVGSYTYTDAEYTTDTSYKGNTPAQVPKHMASLWGDYTIYDG ALSGLTLGTGARLTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLLD REYVASCFNTYGCFWGAERQVVATATFRF >gi|283548477|gb|GG730300.1| GENE 681 762526 - 763323 217 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 14 235 4 226 245 88 28 7e-16 MQENRSHPDTTFALRNVSFRVPGRTLLHPLSLTFPVGKVTGLIGHNGSGKSTLLKMLGRH QPPSEGEILLDEQPLENWSSKAFARKVAYLPQQLPQAEGMTVRELVAIGRYPWHGALGRF GMADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI AHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRSET LEQIYGIPMGILPHPAGAAPVSFVY >gi|283548477|gb|GG730300.1| GENE 682 763323 - 764213 884 296 aa, chain + ## HITS:1 COG:fhuD KEGG:ns NR:ns ## COG: fhuD COG0614 # Protein_GI_number: 16128145 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 296 1 296 296 511 84.0 1e-145 MIGLPHITRRRLLTAMALSPLLWQMNAAHAAAIDPQRIVALEWLPVELLLALGIAPYGIA DIPNYKLWVNEPPLPDAVIDVGLRTEPNLELLTEMKPSFLVWSAGYGPAPEKLARIAPGR GFNFSDGKRPLAVARQSLQEMAQLLNLRASAERHLAEYDRFIASLKPRFIQRGARPVLLT SLLDSRHMLVFGPNSLFQEVLDEYRIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH GNNREMDALMSTPLWQAMPFVRGGRFQRVPAVWFYGATLSAMHFARILDNALGGRA >gi|283548477|gb|GG730300.1| GENE 683 764228 - 766267 2190 679 aa, chain + ## HITS:1 COG:STM0194 KEGG:ns NR:ns ## COG: STM0194 COG0609 # Protein_GI_number: 16763584 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 679 7 685 685 964 91.0 0 MPDGGAKSALSGLRFGRFPGWIRRSRHPALLLLVLFVAACWLTWVNFSVALPRSQWRQAI WSPDINAIEQMVFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQL GITVTTLWVIPGALTTQFAALAGACIVGALVFGVAWGKRLSPVTLILAGLVVSLYCGAIN QLMVIFHHDQLQSMFLWSSGSLTQTDWSGVQRLWPQLLGGVMLTLLLLRPMTLMGLDDGV ARNLGLALSLARLAALTLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLVRLMLAP LIGALILWLSDQIILWLTRVWMEVSTGSVTALVGAPLLLWLLPRLKSMSAPDMNASSRIA AERQNVLMFALAGGVILLLTVVVALSFGRDAHGWTWASGAMLDELMPWRWPRILAALIAG VMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAAT LLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAGVLTWISGSTYNATG EQVLHTGAVMVFLLAMTPLCRRWLTILPLGGDTARAVGMALTPSRVGLLLLAAGLTATAT MTIGPLSFVGLMAPHIARMMGFRRAMPHMLISALAGGVLLVFADWCGRMVLFPYQIPAGL LSTFIGAPYFIYLLRKQSR >gi|283548477|gb|GG730300.1| GENE 684 766364 - 767644 1625 426 aa, chain - ## HITS:1 COG:hemL KEGG:ns NR:ns ## COG: hemL COG0001 # Protein_GI_number: 16128147 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Escherichia coli K12 # 1 426 1 426 426 830 96.0 0 MSKSENLYSAAREVIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYVDYVGSWG PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATM SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCT YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVM TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG NPIAMAAGYACLTEVAQPGIHETLNELTTRLAEGLLEAAEEANIPLVVNHVGGMFGIFFT DSETVTCYQDVMACDVERFKRFFHLMLDEGIYLAPSAFEAGFMSVAHSEDDINNTIDAAR RVFAKL >gi|283548477|gb|GG730300.1| GENE 685 767924 - 769234 1556 436 aa, chain + ## HITS:1 COG:STM0203 KEGG:ns NR:ns ## COG: STM0203 COG0038 # Protein_GI_number: 16763593 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Salmonella typhimurium LT2 # 1 436 38 473 473 734 93.0 0 MAAVVGTVTGLVGVAFEKAVTWVQNQRIGALAQVADHAILLWPLAFILSALLAMVGYFLV RKFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGN IGRMVLDIFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLVSIKA VFTGVIMSSIVFRVFNGEAPIIEVGKLSNAPVNTLWLYLVLGIIFGCVGPLFNTMVLRTQ DMFQRFHGGEIKKWVLMGGAIGGLCGILGLIKPEAAGGGFNLIPIAAAGNFSVGLLLFIF ITRVITTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAASFPQYHLEAGTFAIAGMGAL LAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFMGGKPLYSTILARTLAKQE AEQAAKSQGTTAGENT >gi|283548477|gb|GG730300.1| GENE 686 769316 - 769660 460 114 aa, chain + ## HITS:1 COG:STM0204 KEGG:ns NR:ns ## COG: STM0204 COG0316 # Protein_GI_number: 16763594 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 114 16 129 129 218 97.0 2e-57 MSDDVALPLQFTEAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNDGDM TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFVVTNPNAKSTCGCGSSFSI >gi|283548477|gb|GG730300.1| GENE 687 769780 - 770403 743 207 aa, chain - ## HITS:1 COG:STM0205 KEGG:ns NR:ns ## COG: STM0205 COG2860 # Protein_GI_number: 16763595 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 320 94.0 1e-87 MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVK DPTDLVVAMITSMLTILLVRQPRRLPKWILPVLDAVGLAVFVGIGVNKAFLAGTGPLVAI CMGVITGVGGGIIRDVLAREVPMILRTEIYATACIIGGIVHATAFYTFNVSLENASMMGM IVTLLIRLAAIRWHLKLPTFALDDNGR >gi|283548477|gb|GG730300.1| GENE 688 770441 - 771241 604 266 aa, chain - ## HITS:1 COG:STM0206 KEGG:ns NR:ns ## COG: STM0206 COG0614 # Protein_GI_number: 16763596 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 266 1 266 266 426 83.0 1e-119 MAKLLSRALVALLFTLPAFLYAAPRVVTLSPANTELAFAAGITPVGVSSYSNYPPEAKNI EEVSTWQGMNLERIVALKPDLVVAWRGGNAERQVNQLTALGIKVIWVDAVTIEQVADALR QLAAWSPKPEQAKQAAQTLLDEYALLKSQYASKPKKRVFLQFGANPLFTSGKGSIQNQVL EVCGGENIFAGSRVPWPQVSREQVLARAPQAIVATGGSGGNLKIEQYWGDQLKIPIITLN SDWFERASPRIILAAKQLCNALSQVN >gi|283548477|gb|GG730300.1| GENE 689 771234 - 771932 908 232 aa, chain - ## HITS:1 COG:STM0207 KEGG:ns NR:ns ## COG: STM0207 COG0775 # Protein_GI_number: 16763597 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Salmonella typhimurium LT2 # 1 232 1 232 232 400 93.0 1e-111 MKIGIIGAMEEEVTLLRDKIENRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT LLLERCKPDAIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEFGQLPGCPAGFK ADPALIAAAESCIAQLNLHAVRGLIVSGDAFINGSVGLAKIKHNFPQAIAVEMEATAIAH VCHNFNVPFVVVRAISDVADQQSHLSFDEFLVVAAKQSSLMVETLVQKLAHG >gi|283548477|gb|GG730300.1| GENE 690 772016 - 773533 1054 505 aa, chain + ## HITS:1 COG:dgt KEGG:ns NR:ns ## COG: dgt COG0232 # Protein_GI_number: 16128153 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Escherichia coli K12 # 1 505 1 505 505 921 90.0 0 MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN AAVRTRLTHSMEVQQVGRYIAKEILSRLKEQKLLEQYGLDELTGPFESIVEMSCLMHDIG NPPFGHFGEAAINDWFRQRLYPADAESQPLSDDRCLVAALRLREGEESLNDLRRKVRQDL CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGNAPATHNYLMKKPGYYLSEE PYIERLRKELSLAPYSRFPLTWIMEAADDISYCVADLEDAVEKRIFSVEQLYHHLYEAWG HHEKGSLFSLVVENAWEKSRSNTLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPQIF EGGFNQALLEDASSFSQLLGVYKNVAIKHVFSHPDVEQLELQGYRVISGLLEIYQPLLKM SQPDFTELVDNERVKRFPIESRLFQKLSTRHRLAYVEAVSKISVGCAEFPVQEYYYRCRL IQDYISGMTDLYAWDEYRRLMAVEQ >gi|283548477|gb|GG730300.1| GENE 691 773663 - 775096 1621 477 aa, chain + ## HITS:1 COG:STM0209 KEGG:ns NR:ns ## COG: STM0209 COG0265 # Protein_GI_number: 16763599 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Salmonella typhimurium LT2 # 1 477 1 475 475 740 94.0 0 MKKTTLAMSALALSLGLALSPLSATAAETSSSAMTAQQMPSLAPMLEKVMPSVVSINVEG STTVNTPRMPRNFQQFFGDNSPFCQDGSPFQSSPFCQGGAPGADNGGSQKQKFMALGSGV IIDAAKGYVVTNNHVVDNATVIKVQLSDGRKFDAKVVGKDPRSDIALIQIQDPKNLTAIK LADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNSG GALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEFGQVKRGELGIMGTE LSSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTM PVGSKINLGLLRDGKPVTVNLELQQSSQTQVDSSSIFKGIEGADMSNKGQDKGVVVSDVK ANSPAAQIGLKKGDVIIGANQQPVKNIAELRKILDSKPAVLALNIQRGDSSIYLLMQ >gi|283548477|gb|GG730300.1| GENE 692 775191 - 776402 1480 403 aa, chain + ## HITS:1 COG:STM0210 KEGG:ns NR:ns ## COG: STM0210 COG3835 # Protein_GI_number: 16763600 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Sugar diacid utilization regulator # Organism: Salmonella typhimurium LT2 # 19 402 1 384 385 718 97.0 0 MSPRIIFPMLGLCSQEGFMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRE RIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLR KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALMEWAQRLGIDLNQ PRVVAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNQFGRW DAEDHRKRVEQLIARMKENGQLRFRVSLGNYFTGPGSIARSYRTARTTMMVGKQRMPDSR SYFYQDLMLPVLLDSLRGGWQANELARPLVRLKAMDNNGLLRRTLAAWFRHNVQPLATSK ALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQH >gi|283548477|gb|GG730300.1| GENE 693 776497 - 776883 579 128 aa, chain - ## HITS:1 COG:no KEGG:ECIAI1_0162 NR:ns ## KEGG: ECIAI1_0162 # Name: yaeH # Def: hypothetical protein # Organism: E.coli_IAI1 # Pathway: not_defined # 1 128 1 128 128 217 99.0 1e-55 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD GVGQGYKEVQEISPNLRYVIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA DLEKLTRK >gi|283548477|gb|GG730300.1| GENE 694 776993 - 777817 1055 274 aa, chain - ## HITS:1 COG:STM0213 KEGG:ns NR:ns ## COG: STM0213 COG2171 # Protein_GI_number: 16763603 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Salmonella typhimurium LT2 # 1 274 1 274 274 516 98.0 1e-146 MQQLQNVIESAFERRADITPANVDTVTREAVNQVISLLDSGALRVAEKIEGQWVTHQWLK KAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPS KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID >gi|283548477|gb|GG730300.1| GENE 695 777849 - 780521 2456 890 aa, chain - ## HITS:1 COG:STM0214 KEGG:ns NR:ns ## COG: STM0214 COG2844 # Protein_GI_number: 16763604 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: UTP:GlnB (protein PII) uridylyltransferase # Organism: Salmonella typhimurium LT2 # 1 890 1 890 890 1682 93.0 0 MNTLPEQHANTALPTLPGQPQNPGTWPQHDLNCAGIKAHIDTFQHWLGEAFDSGISAEQL IEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDAQ AEKVGELLTLLWDVRLEVGHSVRTLEECLLEGLSDLTVATNLIETRLLIGDVALFLELQK HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF GATSLDEMVGFGFLTLAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN YGGEGNEPIERMMKDYFRVTRRVSELNHMLLQLFDEAILAMPADEKPHPIDDDFQLRGSL IDLRNDDLFIRKPEAILRMFYIMVRNSAISGIYSTTLRHLRHARRHLTQPLCYIPEARSL FLSMLRHPGAVSRGLLPMHRHSVLWAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE SFANEETRQRHPLCVDLWPRLRQPELILIAALFHDIAKGRGGDHSVLGAQDVLKFAELHG LNSRETQLIVWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTEHRLRFLVCLTVADICA TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL HHIWSRCRANYFVRHSPNQLAWHARHLLQHDLKEPLILLSPQATRGGTEIFIWSPDRPYL FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSSDRHEAIRFGLEQAITQ RSWQPPQPRRQPAKLRHFTVDTEVTFLPTHTDRKSFLELIALDQPGLLARVGQIFADLGI SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG >gi|283548477|gb|GG730300.1| GENE 696 780635 - 781429 992 264 aa, chain - ## HITS:1 COG:STM0215 KEGG:ns NR:ns ## COG: STM0215 COG0024 # Protein_GI_number: 16763605 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Salmonella typhimurium LT2 # 1 264 1 264 264 522 95.0 1e-148 MAISIKTPEEIEKMRVAGRLAAEVLEMIEPFIKPGVSTGELDRICNDYIVNEQQAISACL GYHGYPKSVCISINEVVCHGIPDDAKHLKEGDIVNIDVTVIKDEFHGDTSKMFIVGKPTI LGERLCRVTQESLYLALRMVKPGIRLRTLGAAIQKYAEGEGFSVVREYCGHGIGRGFHEE PQVLHYDADDGGVVLQPGMTFTVEPMLNAGDYRIRTMKDGWTVKTKDRSLSAQYEHTIVV TENGCEILTLRKDDTIPAIITHDK >gi|283548477|gb|GG730300.1| GENE 697 781551 - 781742 273 63 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|26106512|gb|AAN78698.1|AE016755_198 30S ribosomal protein S2 [Escherichia coli CFT073] # 1 63 1 62 307 109 79 2e-22 MVSVAYLWYKARRTSDPFEDYTRWTGAINLTLCNNTHVSAHIPGCPLGSVIWDAWRLNPN FYI >gi|283548477|gb|GG730300.1| GENE 698 781754 - 782479 1225 241 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16759206|ref|NP_454823.1| 30S ribosomal protein S2 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 241 1 241 241 476 99 1e-133 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI SARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQ SQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLG IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVATTVREGRSQDLASQAEESFVEA E >gi|283548477|gb|GG730300.1| GENE 699 782614 - 783465 990 283 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 1 280 1 279 283 385 71 1e-105 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG VIKTKIDGNIAFILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV ALVAKIGENINIRRVASLEGDVLGNYQHGARIGVLVAATGADEELVKQLAMHVAASKPEF VKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK SVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS >gi|283548477|gb|GG730300.1| GENE 700 783612 - 784337 900 241 aa, chain + ## HITS:1 COG:STM0218 KEGG:ns NR:ns ## COG: STM0218 COG0528 # Protein_GI_number: 16763608 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Salmonella typhimurium LT2 # 1 241 1 241 241 457 98.0 1e-129 MATNAKPVYKRILLKLSGEALQGSEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNL FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDNYSWA EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT ATMYEQLTYTEVLDKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT E >gi|283548477|gb|GG730300.1| GENE 701 784477 - 785034 672 185 aa, chain + ## HITS:1 COG:STM0219 KEGG:ns NR:ns ## COG: STM0219 COG0233 # Protein_GI_number: 16763609 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Salmonella typhimurium LT2 # 1 185 1 185 185 287 94.0 8e-78 MINDIRKDAEVRMDKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE DSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVRGE AEGARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDEVQKLTDAAIKKVDAALAEKET ELMQF >gi|283548477|gb|GG730300.1| GENE 702 785132 - 786328 973 398 aa, chain + ## HITS:1 COG:dxr KEGG:ns NR:ns ## COG: dxr COG0743 # Protein_GI_number: 16128166 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Escherichia coli K12 # 1 398 1 398 398 694 90.0 0 MKQLTILGSTGSIGCSTLDVVRHNPEKFRVAALVAGKNVARMVEQCLEFSPRYAVMDDEK SAALVKAALLEQGSRTDVMSGQQAACDMAALDDVDQVMAAIVGAAGLLPTLSAIRAGKSI LLANKESLVTCGRLFMDDVKRHKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS VLLTGSGGPFRETPLRDLVSMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPERVTSGVKPVDFC QLSALTFSAPDYQRYPCLKLAMDAFEQGQAATTALNAANEVTVAAFLAQQIRFTDIADLN LSVLDKMDLQEPQSVDDVLKVDAIARDVARKEVMRLSS >gi|283548477|gb|GG730300.1| GENE 703 786584 - 787273 499 229 aa, chain + ## HITS:1 COG:STM0221 KEGG:ns NR:ns ## COG: STM0221 COG0020 # Protein_GI_number: 16763611 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Salmonella typhimurium LT2 # 1 229 24 252 252 446 96.0 1e-125 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSA LMELFVWALDSEVKNLHRHNVRLRIIGDISRFNSRLQERIRKSEALTAQNTGLTLNIAAN YGGRWDIVQGVRQLAQQVQEGLLRPEQIDEEMLGQQICMHELAPVDLVIRTGGEHRISNF LLWQIAYAELYFTDVLWPDFDEQDFEGALHAFANRERRFGGTEPGDEKA >gi|283548477|gb|GG730300.1| GENE 704 787286 - 788143 716 285 aa, chain + ## HITS:1 COG:STM0222 KEGG:ns NR:ns ## COG: STM0222 COG0575 # Protein_GI_number: 16763612 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Salmonella typhimurium LT2 # 1 285 1 285 285 453 94.0 1e-127 MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRTQRVWLAV LCGLLLALMLFLLPEYHRNIHQPLVEVSLWASLGWWAVALLLVLFYPGSASVWRNSKTLR IIFGVLTIVPFFWGMLALRAWHYDENHYSGALWLLYVMILVWGADSGAYMFGKLFGKHKL APKVSPGKTWQGFIGGLATAAVISWGYGMWANLEVAPVTLLICSIVAALASVLGDLTESM FKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL >gi|283548477|gb|GG730300.1| GENE 705 788155 - 789507 916 450 aa, chain + ## HITS:1 COG:STM0223 KEGG:ns NR:ns ## COG: STM0223 COG0750 # Protein_GI_number: 16763613 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Salmonella typhimurium LT2 # 1 450 1 450 450 831 93.0 0 MLSILWNLAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV IALIPLGGYVKMLDERAEPVAPELRHYAFNNKTVGQRAAIIAAGPIANFLFAIFAYWLVF IIGVPGVRPVVGEITPNSIAAQAQIKPGTELKAVDGIETPDWDAVRLQLVSKIGDEHTII SVAQFGSNQRQDKTLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLSEVQVNSAASKAGL QAGDRIVKVNGQPLTQWMTFVTLVRDNPDKPLALDIERQGSSLSLTLTPDSKQVNGKAEG FAGVVPKIIPLPDEYKTVRQYGPFSAILQASDKTWQLMKLTVSMLGKLITGDVKLNNLSG PISIAQGAGMSAEFGVIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVS ERVQDFSYRIGSILLVLLMGLALFNDFSRL >gi|283548477|gb|GG730300.1| GENE 706 789537 - 791954 2696 805 aa, chain + ## HITS:1 COG:STM0224 KEGG:ns NR:ns ## COG: STM0224 COG4775 # Protein_GI_number: 16763614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Salmonella typhimurium LT2 # 1 805 1 804 804 1554 97.0 0 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR VGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQI NIVGNHAFSTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIETLTKIEPGELYNGTK VTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS KDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTDTQRVPGSPDQVDVVYKVKE RNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYTELSVTNPYFTV DGVSLGGRVFYNDFEADDADLSDYTNKSYGTDVTLGFPVNEYNTLRAGLGYVHNKLSNMQ PQIAMDRYLESMGQPADTSSFAADDFTFNYGWTYNKLDRGYFPTDGSRVNLNGKVTIPGS DNEYYKLSLDTATYVPIDDDHKWVVLGRTKWGYGDGIGSKEMPFYENFYAGGSSTVRGFQ SNTIGPKAVYKNGAHTDWNDDGDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFIS DKYANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPSNIRMSAGIALQWMSPLGPLVF SYAQPFKKYDGDKAEQFQFNIGKTW >gi|283548477|gb|GG730300.1| GENE 707 792077 - 792562 513 161 aa, chain + ## HITS:1 COG:STM0225 KEGG:ns NR:ns ## COG: STM0225 COG2825 # Protein_GI_number: 16763615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 206 91.0 1e-53 MKKWLLAAGLGLAMATSAQAADKIAIVNMGSLFQQVAQKTGVSATLENEFKGRASELQRM ESDLQSKMQRLQSMKAGSDRTKLEKDVMAQRQTFSQKAQAFEQDRQRRSNEERGKLVTRI QTAVKSVASSQSIDLVVDANTVAYNSSDVKDITADVLKQVK >gi|283548477|gb|GG730300.1| GENE 708 792566 - 793591 835 341 aa, chain + ## HITS:1 COG:STM0226 KEGG:ns NR:ns ## COG: STM0226 COG1044 # Protein_GI_number: 16763616 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Salmonella typhimurium LT2 # 1 341 1 341 341 634 97.0 0 MPSIRLADLAEQLDAELHGDGDIVITGVASMQSAQTGNITFMVNPKYREHLGVCQASAVV MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAAIDATAKLGNNVSVGA NAVIESGVELGDNVVIGAGCFVGKNTKIGAGSRLWANVTIYHDIQIGENCLIQSSTVVGS DGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRGALDDTVIGNGVIIDNQCQIAHN VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIERKVNQQD >gi|283548477|gb|GG730300.1| GENE 709 793696 - 794151 504 151 aa, chain + ## HITS:1 COG:ZfabZ KEGG:ns NR:ns ## COG: ZfabZ COG0764 # Protein_GI_number: 15799862 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Escherichia coli O157:H7 EDL933 # 1 151 1 151 151 294 99.0 4e-80 MTTNTHTLHIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT RRGLTRFKGVALVDGKVVCEATMMCARSREA >gi|283548477|gb|GG730300.1| GENE 710 794155 - 794943 737 262 aa, chain + ## HITS:1 COG:lpxA KEGG:ns NR:ns ## COG: lpxA COG1043 # Protein_GI_number: 16128174 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Escherichia coli K12 # 1 262 1 262 262 494 94.0 1e-140 MIDKSAFIHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGVTKVGSDNLLMIN AHVAHDCTVGNRCILANNATLAGHVSLDDFVIIGGMTAVHQFCIIGAHVMVGGCSGVAQD VPPYVIAQGNHATPFGVNIEGLKRRGFTREAITAIRNAYKALYRSGKTLEEVKPEIAELA KQYPEVQAFSDFFERSTRGLIR >gi|283548477|gb|GG730300.1| GENE 711 794943 - 796091 1110 382 aa, chain + ## HITS:1 COG:lpxB KEGG:ns NR:ns ## COG: lpxB COG0763 # Protein_GI_number: 16128175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Escherichia coli K12 # 1 382 1 382 382 716 95.0 0 MTEQRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGPLMQAEGCEAWYEMEEL AVMGIVEVLGRLRRLLHIRADLTRRFTDLKPDVFVGIDAPDFNITLEGNLKKQGIKTIHY VSPSVWAWRQKRVFKIGRSTNMVLAFLPFEKAFYDKFNVPCRFIGHTMADAMPLDPDKNA ARDALGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQQYPDLEVVVPLVNAKRREQ FERIKAEVAPELSVHLLNGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPHALAQALLPLLANGKTSHAMHDTFRE LHQQIRCNADEQAADAVLELAQ >gi|283548477|gb|GG730300.1| GENE 712 796088 - 796684 541 198 aa, chain + ## HITS:1 COG:rnhB KEGG:ns NR:ns ## COG: rnhB COG0164 # Protein_GI_number: 16128176 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Escherichia coli K12 # 1 198 1 198 198 353 93.0 9e-98 MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDE IKEKALSWSVGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALPVPSM AVVKGDSRVAEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGAT EHHRRSFGPVKRVLGLSS >gi|283548477|gb|GG730300.1| GENE 713 796709 - 800191 4004 1160 aa, chain + ## HITS:1 COG:STM0231 KEGG:ns NR:ns ## COG: STM0231 COG0587 # Protein_GI_number: 16763621 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 1160 1 1160 1160 2280 95.0 0 MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA GIKPIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDW LVELKEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEEN YLHAAVELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM RSEEEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVAKSKEGL EQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM AKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG VGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN SLSDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKY ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD RLLNDLRGLIGSEQVELEFD >gi|283548477|gb|GG730300.1| GENE 714 800204 - 801163 1271 319 aa, chain + ## HITS:1 COG:STM0232 KEGG:ns NR:ns ## COG: STM0232 COG0825 # Protein_GI_number: 16763622 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Salmonella typhimurium LT2 # 1 319 1 319 319 612 98.0 1e-175 MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGA WQVAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQK GRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIVTFIDTPGAYPGVGAEERGQSEA IARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS ADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEVMAASLKAQLLADLADLDVL SKEDLKNRRYQRLMSYGYA >gi|283548477|gb|GG730300.1| GENE 715 801263 - 803401 2166 712 aa, chain + ## HITS:1 COG:STM0234 KEGG:ns NR:ns ## COG: STM0234 COG1982 # Protein_GI_number: 16763624 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Salmonella typhimurium LT2 # 1 712 1 712 713 1420 93.0 0 MNIIAIMGPHGVFYKDEPIKELERALQQQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSAHDLRMALWFFEYALGQSDDIATRIRQY TSEYLDNITPPFTKALFTYVKEGKYTFCTPGHMAGTAYQKSPVGCLFYDFFGGNTLKADV SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPTGSTLLI DRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRASIESKVEETPQAQWPVH AVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIF ETQSTHKMLAALSQASLIHIKGDYDEDTFNEAFMMHTSTSPSYPIVASIETAAAMLRGNS GKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPERVDEAECWPVAPGEDWHGFVDAD ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIG IDKTRAMGLLRGLTEFKRSYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQH DLSGLMLRAFDTLPEMKMTPHQAWQRQIKGEVETVALDQLVGRVSANMILPYPPGVPLLM PGEMIAEKSRAVLDFLLMLCSVGQRYPGFETDIHGAKLGEDGVYRVRVLKMA >gi|283548477|gb|GG730300.1| GENE 716 803469 - 803858 358 129 aa, chain + ## HITS:1 COG:ECs0189 KEGG:ns NR:ns ## COG: ECs0189 COG0346 # Protein_GI_number: 15829443 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Escherichia coli O157:H7 # 1 128 10 137 138 244 87.0 3e-65 MLGLKQVHHIAIIATDYAASKAFYCDVLGFTLLSEAYREERDSWKGDLALNGQYVIELFS FPFPPCRPSRPEACGLRHLAFSVDDVEKAIAHLEAHDVKCEAVRIDPFTGKRFTFFNDPD GLPLELYEL >gi|283548477|gb|GG730300.1| GENE 717 803920 - 805212 1043 430 aa, chain + ## HITS:1 COG:STM0236 KEGG:ns NR:ns ## COG: STM0236 COG0037 # Protein_GI_number: 16763626 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Salmonella typhimurium LT2 # 14 430 14 430 430 671 81.0 0 MTTLTLNTSLLNSQSILVAFSGGLDSTVLLHQLVLWRAQHPQVALRAIHIHHGLSPHADG WVQHCESVCAQWQVPLVVERVHLEDDGLGIEAQARRARYQAFAQTLLPGEVLMTAQHLDD QCETFLLALKRGSGPAGLSAMGERSPFAGTQLIRPLLAQTREALEGWARQHQLCWIEDES NQDDAYDRNFLRLRVTPLLQQRWPHFAQATARSAALCAEQESLLDELLASDLANCVTAQG TLLLAPLMMMSDVRRAALLRRWLAGLHAPMPSRDALERIWQEVALAREDASPCFRLGGFD IRRYQSQLWWVKPVDGHSETVIPWSCWQTPLTLPAGLGSVQLTPAGELRMPQADEPVSIR FKASGLLHIVGRSGGRKLKKIWQEQGIPPWRRDTTPLLFYGETLIAAAGVFVTREGIAED EEGVSLIWHA >gi|283548477|gb|GG730300.1| GENE 718 805296 - 805550 265 84 aa, chain - ## HITS:1 COG:ECs0191 KEGG:ns NR:ns ## COG: ECs0191 COG4568 # Protein_GI_number: 15829445 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Escherichia coli O157:H7 # 1 84 3 86 86 144 89.0 4e-35 MNETYQPINCDDYDNLELACQHHLLLTLALKDGEVLQAKANDLVSRKNVEYLVAEVAGET RELRLDKIASFSHPQIGTVVVSES >gi|283548477|gb|GG730300.1| GENE 719 805543 - 805743 153 66 aa, chain - ## HITS:1 COG:no KEGG:ROD_01982 NR:ns ## KEGG: ROD_01982 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 66 7 72 72 109 96.0 3e-23 MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEVAADSALSESVREKAAYAAANLLV SDYVNE >gi|283548477|gb|GG730300.1| GENE 720 805932 - 806477 662 181 aa, chain + ## HITS:1 COG:STM0239 KEGG:ns NR:ns ## COG: STM0239 COG4681 # Protein_GI_number: 16763629 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 181 1 181 181 300 91.0 8e-82 MALKATIYKAVVNVADLDRNQFLDAALTLARHPSETQERMMLRLLAWIKYADERLQFTRG LSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQSAEVALFAYNSRAAQIWWQQNQ GKCAQFKNLTVWYLDDEQLAQLSEFAGRTMALQATIQDGAIWLSDSQNNLEIHLTAWQPR S >gi|283548477|gb|GG730300.1| GENE 721 806474 - 806896 199 140 aa, chain + ## HITS:1 COG:STM0240 KEGG:ns NR:ns ## COG: STM0240 COG1186 # Protein_GI_number: 16763630 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Salmonella typhimurium LT2 # 1 140 1 140 140 187 87.0 4e-48 MIVLSRNVSIPDNELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASGLPEYYKERLLAAR HHLISGDGVIIIKAQEYRSQELNREAAISRLVAVIKELTAVQKSRQATRPTRASKERRLS SKAQKSTVKSLRGRVRRTQD >gi|283548477|gb|GG730300.1| GENE 722 806930 - 807625 652 231 aa, chain + ## HITS:1 COG:ECs0194 KEGG:ns NR:ns ## COG: ECs0194 COG3015 # Protein_GI_number: 15829448 # Func_class: M Cell wall/membrane/envelope biogenesis; P Inorganic ion transport and metabolism # Function: Uncharacterized lipoprotein NlpE involved in copper resistance # Organism: Escherichia coli O157:H7 # 1 231 2 232 236 362 75.0 1e-100 MKTAILSVVAACTLFSLIGCNNRSEVEVLQPTRAAELKPMQQSWRGILPCADCEGIETSL FLEKDGTWVMNERYQGVRDEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGEALEMLD REGNPIESQFNYTLQPVSSSLPVTPMPMRGMYFYMADAAIFTDCATGKRMPVANNAQLER DYLAARAENGQSVLLTLEAHFTLEANPDTGEKVKTLMADKDAKFIPGKGCN >gi|283548477|gb|GG730300.1| GENE 723 807668 - 809386 2153 572 aa, chain - ## HITS:1 COG:ECs0196 KEGG:ns NR:ns ## COG: ECs0196 COG0442 # Protein_GI_number: 15829450 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Escherichia coli O157:H7 # 1 572 1 572 572 1105 95.0 0 MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDSSDYAANIEFAEAVA PKAPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVEGSSYPLVALLVRG DHELNEVKAEKLPQVASPLTFATEEEIRAVVKAGPGSLGPVNMPIPVVIDRTVAVMSDFA AGANIDGKHYFGINWDRDVATPEVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTK YSEAMKAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQNYDDRGIVWPDAIAPFQVAILP MNMHKSYRVQELAEKLYAELRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLD NDDIEYKYRRNGEKQLIKTGDIVDYLVKAIKG >gi|283548477|gb|GG730300.1| GENE 724 809500 - 810207 556 235 aa, chain - ## HITS:1 COG:STM0243 KEGG:ns NR:ns ## COG: STM0243 COG1720 # Protein_GI_number: 16763632 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 235 1 235 235 399 83.0 1e-111 MSHFQFEQIGVIRSPYKEKFAVPRQPGLVKSASGELHLLAPYNQADAVRGLEAFSHLWVI FVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPVGMSLVELRGIRCHKEHVILD LGGLDLVDGTPVVDIKPYLPFAESLPDARASYAQDAPQASVDVTFSEEIAGQLPELEKRY PHLRQFIAEVLAQDPRPAYRKNEEEGKTYAVWLLDFNVRWRVTPSGFEVFALEAR >gi|283548477|gb|GG730300.1| GENE 725 810204 - 810557 355 117 aa, chain - ## HITS:1 COG:no KEGG:SG0248 NR:ns ## KEGG: SG0248 # Name: rcsF # Def: outer membrane lipoprotein # Organism: S.enterica_Gallinarum # Pathway: Two-component system [PATH:seg02020] # 1 117 18 134 134 186 94.0 3e-46 MLSRSPVEPAQSTATPPKVEPEKPKAPRAAPVRIITNAEDLVGKPFRDLGEVSGESCQAS NQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNISAK >gi|283548477|gb|GG730300.1| GENE 726 810725 - 811540 1274 271 aa, chain - ## HITS:1 COG:ECs0199 KEGG:ns NR:ns ## COG: ECs0199 COG1464 # Protein_GI_number: 15829453 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli O157:H7 # 1 271 1 271 271 498 96.0 1e-141 MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLD VELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAAGNTFVYPIAGYSKK IKSLDELQEGSQVAIPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTALDVIENPKNLKLV ELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKDSPYVNLIVTREDNKDA ENVKKFVQAYQSDEVYEAANKVFNGGAVKGW >gi|283548477|gb|GG730300.1| GENE 727 811585 - 812238 845 217 aa, chain - ## HITS:1 COG:STM0246 KEGG:ns NR:ns ## COG: STM0246 COG2011 # Protein_GI_number: 16763635 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 217 1 217 217 305 95.0 5e-83 MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIENAKLYRTLSALV NIFRSIPFIILLVWMIPFTRMIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLI EASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYG YIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRVVTHK >gi|283548477|gb|GG730300.1| GENE 728 812231 - 813262 1303 343 aa, chain - ## HITS:1 COG:STM0247 KEGG:ns NR:ns ## COG: STM0247 COG1135 # Protein_GI_number: 16763636 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 343 1 343 343 659 97.0 0 MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG SVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRR VTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF IQSTLHLDIPEDYLARLKAKPEADSVPMLRMEFTGHSVDAPLLSETARRFNVNNNIISAQ MDYAGGVKFGIMLTEMHGTQEDTQAAISWLQEHHVKVEVLGYV >gi|283548477|gb|GG730300.1| GENE 729 813452 - 814018 472 188 aa, chain + ## HITS:1 COG:ECs0202 KEGG:ns NR:ns ## COG: ECs0202 COG0241 # Protein_GI_number: 15829456 # Func_class: E Amino acid transport and metabolism # Function: Histidinol phosphatase and related phosphatases # Organism: Escherichia coli O157:H7 # 1 188 1 188 191 367 91.0 1e-102 MAKSVPAIFLDRDGTINVDHGYVHEIDEFEFIDGVIDAMRELKNMGYALIIVTNQSGIAR GKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGTVEEYRQVCDCRKPHPGMLISA RDFLHINMAASYMVGDKIEDMQAATAANVGTKVLVRTGKPVTPEAENAADLVINSLADLP MAIKKQQK Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:23:27 2011 Seq name: gi|283548476|gb|GG730301.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld2, whole genome shotgun sequence Length of sequence - 499154 bp Number of predicted genes - 434, with homology - 430 Number of transcription units - 224, operones - 100 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 1958 - 2017 80.3 2 1 Op 2 . + CDS 2049 - 2903 608 ## COG0582 Integrase - Term 2891 - 2949 7.2 3 2 Op 1 . - CDS 3035 - 4300 991 ## COG0673 Predicted dehydrogenases and related proteins 4 2 Op 2 . - CDS 4282 - 6972 2133 ## COG4354 Predicted bile acid beta-glucosidase 5 2 Op 3 . - CDS 6969 - 8363 1381 ## COG2211 Na+/melibiose symporter and related transporters 6 2 Op 4 . - CDS 8350 - 8487 107 ## gi|283835268|ref|ZP_06355009.1| conserved hypothetical protein 7 2 Op 5 . - CDS 8561 - 8857 233 ## COG3423 Predicted transcriptional regulator - Prom 8907 - 8966 1.8 + Prom 8823 - 8882 2.0 8 3 Tu 1 . + CDS 8934 - 9278 193 ## COG1396 Predicted transcriptional regulators + Term 9320 - 9362 -0.6 - Term 10246 - 10293 10.8 9 4 Tu 1 . - CDS 10487 - 11776 398 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Prom 11849 - 11908 4.4 - TRNA 11939 - 12014 84.1 # Phe GAA 0 0 - Term 11834 - 11877 6.2 10 5 Tu 1 . - CDS 12120 - 12827 547 ## COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - Prom 13032 - 13091 3.1 11 6 Tu 1 . + CDS 13297 - 15432 2202 ## COG1982 Arginine/lysine/ornithine decarboxylases + Term 15484 - 15513 2.1 - Term 15469 - 15504 6.7 12 7 Tu 1 . - CDS 15520 - 16776 1525 ## COG0477 Permeases of the major facilitator superfamily - Prom 16839 - 16898 5.1 - Term 16928 - 16984 8.8 13 8 Op 1 6/0.127 - CDS 16987 - 18072 1089 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 14 8 Op 2 11/0.013 - CDS 18159 - 18428 396 ## COG2924 Fe-S cluster protector protein 15 8 Op 3 . - CDS 18456 - 19607 1076 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 - Prom 19649 - 19708 2.6 + Prom 19577 - 19636 3.5 16 9 Op 1 4/0.354 + CDS 19669 - 20388 574 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 17 9 Op 2 . + CDS 20388 - 20714 468 ## COG3171 Uncharacterized protein conserved in bacteria + Term 20723 - 20755 4.1 18 9 Op 3 . + CDS 20767 - 21483 983 ## ROD_50291 hypothetical protein + Term 21501 - 21537 8.0 + Prom 21525 - 21584 5.8 19 10 Tu 1 . + CDS 21672 - 22718 1260 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Term 22593 - 22639 1.1 20 11 Op 1 13/0.013 - CDS 22828 - 23964 979 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 21 11 Op 2 2/0.595 - CDS 23957 - 24550 944 ## PROTEIN SUPPORTED gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase 22 11 Op 3 6/0.127 - CDS 24558 - 24848 223 ## COG1872 Uncharacterized conserved protein 23 11 Op 4 5/0.241 - CDS 24845 - 25411 736 ## COG0762 Predicted integral membrane protein 24 11 Op 5 . - CDS 25430 - 26134 666 ## COG0325 Predicted enzyme with a TIM-barrel fold - Prom 26179 - 26238 3.2 25 12 Tu 1 . + CDS 26152 - 27132 693 ## COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT - Term 27022 - 27078 8.1 26 13 Op 1 8/0.076 - CDS 27129 - 27545 415 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 27 13 Op 2 2/0.595 - CDS 27545 - 28108 674 ## COG1678 Putative transcriptional regulator - Prom 28145 - 28204 2.1 - Term 28252 - 28281 -0.4 28 14 Op 1 2/0.595 - CDS 28285 - 29232 353 ## PROTEIN SUPPORTED gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme 29 14 Op 2 3/0.456 - CDS 29245 - 29976 688 ## COG1385 Uncharacterized protein conserved in bacteria 30 14 Op 3 6/0.127 - CDS 30052 - 30759 653 ## COG2356 Endonuclease I - Prom 30781 - 30840 2.4 31 15 Op 1 4/0.354 - CDS 30853 - 31350 350 ## COG3091 Uncharacterized protein conserved in bacteria - Term 31378 - 31423 9.2 32 15 Op 2 4/0.354 - CDS 31429 - 32823 1928 ## COG0477 Permeases of the major facilitator superfamily - Prom 32896 - 32955 5.5 - Term 33149 - 33185 4.9 33 16 Tu 1 . - CDS 33209 - 34363 1510 ## COG0192 S-adenosylmethionine synthetase - Prom 34503 - 34562 3.6 + Prom 35075 - 35134 5.9 34 17 Tu 1 5/0.241 + CDS 35230 - 37128 2408 ## COG1166 Arginine decarboxylase (spermidine biosynthesis) + Term 37268 - 37316 8.2 + Prom 37186 - 37245 3.1 35 18 Tu 1 . + CDS 37335 - 38255 1220 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 36 19 Tu 1 . - CDS 38352 - 39110 943 ## COG0501 Zn-dependent protease with chaperone function - Prom 39132 - 39191 5.3 + Prom 39251 - 39310 2.7 37 20 Tu 1 . + CDS 39390 - 41381 2378 ## COG0021 Transketolase + Term 41395 - 41441 6.0 38 21 Op 1 3/0.456 - CDS 41443 - 42093 176 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 39 21 Op 2 34/0.000 - CDS 42087 - 42764 305 ## COG1122 ABC-type cobalt transport system, ATPase component 40 21 Op 3 . - CDS 42752 - 43342 495 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 41 22 Op 1 . - CDS 43460 - 44038 616 ## CKO_04299 hypothetical protein 42 22 Op 2 . - CDS 44062 - 44487 319 ## COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif - Prom 44713 - 44772 5.0 + Prom 44601 - 44660 4.7 43 23 Op 1 26/0.000 + CDS 44863 - 45891 876 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 44 23 Op 2 9/0.063 + CDS 45931 - 47094 1412 ## COG0126 3-phosphoglycerate kinase + Term 47104 - 47134 3.0 45 23 Op 3 4/0.354 + CDS 47183 - 48262 1184 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 48285 - 48318 5.2 + Prom 48369 - 48428 4.4 46 24 Tu 1 . + CDS 48455 - 49315 1113 ## COG0668 Small-conductance mechanosensitive channel + Prom 49424 - 49483 5.0 47 25 Op 1 . + CDS 49511 - 50146 731 ## COG1279 Lysine efflux permease + Term 50196 - 50227 1.3 48 25 Op 2 . + CDS 50255 - 50986 763 ## COG2968 Uncharacterized conserved protein + Term 50995 - 51028 4.5 + Prom 51026 - 51085 3.5 49 26 Tu 1 . + CDS 51110 - 52006 871 ## COG0583 Transcriptional regulator + Term 52238 - 52282 -0.9 50 27 Op 1 . - CDS 52003 - 53469 1035 ## COG0427 Acetyl-CoA hydrolase 51 27 Op 2 . - CDS 53494 - 54279 1066 ## COG1024 Enoyl-CoA hydratase/carnithine racemase 52 27 Op 3 6/0.127 - CDS 54290 - 55285 870 ## COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family 53 27 Op 4 3/0.456 - CDS 55278 - 57422 2269 ## COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit - Prom 57549 - 57608 3.9 - Term 57574 - 57599 -0.8 54 28 Tu 1 . - CDS 57652 - 58545 970 ## COG0583 Transcriptional regulator - Prom 58672 - 58731 3.0 + Prom 58618 - 58677 2.2 55 29 Tu 1 . + CDS 58716 - 59375 863 ## COG0120 Ribose 5-phosphate isomerase + Prom 59528 - 59587 4.5 56 30 Tu 1 . + CDS 59646 - 60878 1634 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 60890 - 60924 4.1 - Term 61057 - 61088 2.4 57 31 Tu 1 . - CDS 61259 - 61855 461 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 58 32 Tu 1 . + CDS 61887 - 62237 96 ## EFER_2848 hypothetical protein 59 33 Tu 1 . - CDS 62100 - 62429 286 ## COG3027 Uncharacterized protein conserved in bacteria - Prom 62549 - 62608 3.1 + Prom 62509 - 62568 1.5 60 34 Op 1 5/0.241 + CDS 62597 - 63175 693 ## COG3079 Uncharacterized protein conserved in bacteria 61 34 Op 2 8/0.076 + CDS 63200 - 64525 1378 ## COG0006 Xaa-Pro aminopeptidase 62 34 Op 3 8/0.076 + CDS 64522 - 65700 1023 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Prom 65707 - 65766 1.6 63 35 Tu 1 5/0.241 + CDS 65816 - 67018 1416 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Term 67067 - 67100 2.8 64 36 Op 1 18/0.000 + CDS 67471 - 68565 1152 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) 65 36 Op 2 12/0.013 + CDS 68590 - 68979 563 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Prom 68986 - 69045 4.0 66 37 Tu 1 . + CDS 69098 - 71971 3542 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain + Term 72000 - 72039 5.2 - Term 72047 - 72091 4.0 67 38 Tu 1 . - CDS 72127 - 73233 872 ## COG0371 Glycerol dehydrogenase and related enzymes - Prom 73333 - 73392 7.0 + Prom 73369 - 73428 4.0 68 39 Op 1 . + CDS 73554 - 74465 671 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 69 39 Op 2 . + CDS 74552 - 76072 1137 ## COG2721 Altronate dehydratase + Prom 76113 - 76172 4.1 70 40 Tu 1 . + CDS 76198 - 77208 402 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 + Prom 77438 - 77497 5.7 71 41 Tu 1 . + CDS 77521 - 78912 1097 ## COG2610 H+/gluconate symporter and related permeases + Term 78956 - 78994 9.5 + Prom 78984 - 79043 5.7 72 42 Tu 1 . + CDS 79073 - 79828 451 ## COG1414 Transcriptional regulator 73 43 Tu 1 . - CDS 79894 - 81327 1618 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase - Prom 81357 - 81416 4.3 74 44 Tu 1 . - CDS 81448 - 82176 521 ## COG1737 Transcriptional regulators - Prom 82214 - 82273 3.6 + Prom 81924 - 81983 3.9 75 45 Tu 1 . + CDS 82229 - 82540 415 ## COG3097 Uncharacterized protein conserved in bacteria + Prom 82556 - 82615 5.3 76 46 Tu 1 . + CDS 82704 - 83366 810 ## COG1272 Predicted membrane protein, hemolysin III homolog 77 47 Tu 1 . - CDS 83498 - 84481 1047 ## COG0354 Predicted aminomethyltransferase related to GcvT - Prom 84514 - 84573 3.5 + Prom 84314 - 84373 1.8 78 48 Op 1 . + CDS 84521 - 84748 64 ## gi|291086196|ref|ZP_06571392.1| putative molybdenum cofactor biosynthesis protein 79 48 Op 2 . + CDS 84738 - 85004 214 ## COG2938 Uncharacterized conserved protein 80 48 Op 3 . + CDS 84985 - 85383 124 ## EcSMS35_3029 hypothetical protein - Term 85288 - 85319 0.4 81 49 Tu 1 . - CDS 85484 - 86005 783 ## COG0716 Flavodoxins - Prom 86036 - 86095 2.6 + Prom 86033 - 86092 2.6 82 50 Op 1 8/0.076 + CDS 86119 - 87015 787 ## COG4974 Site-specific recombinase XerD 83 50 Op 2 7/0.089 + CDS 87039 - 87752 984 ## COG1651 Protein-disulfide isomerase 84 50 Op 3 5/0.241 + CDS 87758 - 89491 1800 ## COG0608 Single-stranded DNA-specific exonuclease + Term 89518 - 89549 -0.7 + Prom 89515 - 89574 2.0 85 51 Op 1 8/0.076 + CDS 89800 - 90681 1051 ## COG1186 Protein chain release factor B 86 51 Op 2 . + CDS 90691 - 92208 2114 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 92257 - 92308 5.1 - Term 92207 - 92246 4.5 87 52 Tu 1 . - CDS 92285 - 92851 371 ## COG1443 Isopentenyldiphosphate isomerase - Prom 92882 - 92941 4.0 + Prom 92830 - 92889 3.5 88 53 Tu 1 . + CDS 93006 - 93761 533 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 93859 - 93925 30.0 + TRNA 93841 - 93914 78.8 # Gly CCC 0 0 - Term 93796 - 93832 2.4 89 54 Op 1 . - CDS 93954 - 94586 498 ## Shewana3_3791 hypothetical protein 90 54 Op 2 . - CDS 94589 - 95308 308 ## Shewana3_3792 hypothetical protein 91 54 Op 3 . - CDS 95335 - 95859 432 ## COG1247 Sortase and related acyltransferases - Prom 96082 - 96141 6.4 + Prom 96372 - 96431 5.4 92 55 Op 1 . + CDS 96680 - 99142 1957 ## ECL_04313 biofilm PGA synthesis protein PgaA 93 55 Op 2 6/0.127 + CDS 99152 - 101173 1946 ## COG0726 Predicted xylanase/chitin deacetylase 94 55 Op 3 . + CDS 101170 - 102504 1342 ## COG1215 Glycosyltransferases, probably involved in cell wall biogenesis 95 55 Op 4 . + CDS 102501 - 103007 478 ## YE2481 hemin storage system protein 96 55 Op 5 5/0.241 + CDS 103073 - 103318 217 ## COG3592 Uncharacterized conserved protein 97 55 Op 6 . + CDS 103330 - 103602 404 ## COG2388 Predicted acetyltransferase 98 56 Tu 1 . - CDS 103645 - 104574 1124 ## COG0583 Transcriptional regulator - Prom 104661 - 104720 4.8 99 57 Tu 1 . + CDS 104967 - 105572 730 ## COG0666 FOG: Ankyrin repeat 100 58 Op 1 . + CDS 105690 - 106487 351 ## ECO103_0297 hypothetical protein 101 58 Op 2 . + CDS 106519 - 108012 2017 ## COG0074 Succinyl-CoA synthetase, alpha subunit 102 58 Op 3 . + CDS 108012 - 109427 1871 ## ECUMN_0360 hypothetical protein 103 59 Op 1 . + CDS 109548 - 111098 1964 ## COG2252 Permeases 104 59 Op 2 3/0.456 + CDS 111125 - 112075 1078 ## COG0549 Carbamate kinase 105 59 Op 3 . + CDS 112088 - 113470 1623 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 106 60 Tu 1 . - CDS 113516 - 114397 811 ## COG2215 ABC-type uncharacterized transport system, permease component - Prom 114423 - 114482 3.0 + Prom 114402 - 114461 2.8 107 61 Tu 1 . + CDS 114518 - 114790 361 ## COG1937 Uncharacterized protein conserved in bacteria + Term 114925 - 114956 0.0 108 62 Tu 1 . + CDS 115286 - 115447 69 ## gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) 109 63 Tu 1 . - CDS 115577 - 116806 1104 ## COG0814 Amino acid permeases - Prom 116841 - 116900 5.5 - Term 116898 - 116936 6.3 110 64 Tu 1 . - CDS 116949 - 117404 470 ## COG4125 Predicted membrane protein - Prom 117441 - 117500 3.4 + Prom 117372 - 117431 2.3 111 65 Tu 1 . + CDS 117506 - 118390 949 ## COG0583 Transcriptional regulator + Prom 118412 - 118471 3.1 112 66 Tu 1 . + CDS 118493 - 119671 1312 ## COG0183 Acetyl-CoA acetyltransferase + Prom 119907 - 119966 7.7 113 67 Op 1 9/0.063 + CDS 120122 - 121006 821 ## COG3717 5-keto 4-deoxyuronate isomerase 114 67 Op 2 9/0.063 + CDS 121065 - 121826 1037 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 121849 - 121877 3.0 + Prom 121960 - 122019 7.2 115 68 Tu 1 . + CDS 122204 - 123562 1523 ## COG0477 Permeases of the major facilitator superfamily + Term 123571 - 123619 5.5 - Term 123559 - 123610 6.1 116 69 Tu 1 . - CDS 123670 - 123996 326 ## COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 124030 - 124089 8.1 + Prom 123986 - 124045 4.3 117 70 Tu 1 . + CDS 124138 - 124830 862 ## COG1794 Aspartate racemase - Term 124724 - 124757 -0.4 118 71 Op 1 . - CDS 124933 - 126063 961 ## EcSMS35_3386 pilus biogenesis initiator 119 71 Op 2 . - CDS 126060 - 128759 2850 ## EcSMS35_3387 hypothetical protein - Term 128779 - 128816 6.4 120 72 Op 1 . - CDS 128836 - 129330 682 ## ECO103_3841 putative fimbrial subunit 121 72 Op 2 . - CDS 129360 - 130067 576 ## ECO103_3842 putative fimbrial protein 122 72 Op 3 . - CDS 130098 - 130268 95 ## gi|291086216|ref|ZP_06571400.1| conserved hypothetical protein - Prom 130303 - 130362 6.0 - Term 130489 - 130526 4.7 123 73 Op 1 . - CDS 130561 - 131130 624 ## ROD_11791 hypothetical protein 124 73 Op 2 10/0.038 - CDS 131127 - 133535 2387 ## COG3188 P pilus assembly protein, porin PapC 125 73 Op 3 . - CDS 133549 - 134262 750 ## COG3121 P pilus assembly protein, chaperone PapD - Prom 134298 - 134357 2.6 - Term 134304 - 134339 4.4 126 74 Op 1 . - CDS 134370 - 135041 441 ## ECL_02082 hypothetical protein 127 74 Op 2 . - CDS 135081 - 135755 764 ## ECL_04607 hypothetical protein - Prom 135778 - 135837 4.2 128 75 Tu 1 . - CDS 135964 - 136653 599 ## ECL_04607 hypothetical protein - Prom 136716 - 136775 6.4 129 76 Tu 1 . - CDS 136898 - 137821 760 ## COG0583 Transcriptional regulator - Prom 137873 - 137932 2.2 + Prom 137841 - 137900 6.7 130 77 Tu 1 . + CDS 137938 - 139194 1516 ## COG0019 Diaminopimelate decarboxylase 131 78 Op 1 2/0.595 - CDS 139288 - 140298 1080 ## COG1609 Transcriptional regulators 132 78 Op 2 . - CDS 140312 - 141340 808 ## COG1609 Transcriptional regulators + Prom 141839 - 141898 4.5 133 79 Op 1 5/0.241 + CDS 141937 - 144096 2367 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 134 79 Op 2 . + CDS 144089 - 145282 1479 ## COG0477 Permeases of the major facilitator superfamily - Term 145306 - 145361 10.4 135 80 Tu 1 . - CDS 145386 - 146426 1262 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 146452 - 146511 11.3 - Term 146489 - 146530 9.1 136 81 Tu 1 . - CDS 146533 - 146751 275 ## G2583_3488 hypothetical protein 137 82 Op 1 5/0.241 - CDS 146896 - 147609 979 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance 138 82 Op 2 . - CDS 147688 - 148380 900 ## COG3066 DNA mismatch repair protein - Prom 148612 - 148671 5.3 139 83 Op 1 7/0.089 + CDS 149065 - 149595 202 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 140 83 Op 2 5/0.241 + CDS 149608 - 151854 2353 ## COG3605 Signal transduction protein containing GAF and PtsI domains + Term 151971 - 152005 5.1 + Prom 151856 - 151915 3.5 141 84 Op 1 11/0.013 + CDS 152045 - 152920 1129 ## COG0682 Prolipoprotein diacylglyceryltransferase 142 84 Op 2 4/0.354 + CDS 152948 - 153721 906 ## COG0207 Thymidylate synthase + Term 153742 - 153773 2.4 143 85 Op 1 12/0.013 + CDS 153905 - 154375 218 ## COG2165 Type II secretory pathway, pseudopilin PulG 144 85 Op 2 . + CDS 154414 - 154929 336 ## COG4795 Type II secretory pathway, component PulJ 145 85 Op 3 . + CDS 154926 - 155333 219 ## SDY_3041 hypothetical protein 146 85 Op 4 5/0.241 + CDS 155231 - 155641 164 ## COG4967 Tfp pilus assembly protein PilV 147 85 Op 5 5/0.241 + CDS 155654 - 159022 3573 ## COG1330 Exonuclease V gamma subunit 148 86 Op 1 5/0.241 + CDS 159202 - 162090 2998 ## COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like 149 86 Op 2 13/0.013 + CDS 162083 - 165628 3644 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 150 86 Op 3 . + CDS 165625 - 167454 1464 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 151 87 Tu 1 . - CDS 167564 - 168895 1298 ## COG0548 Acetylglutamate kinase - Prom 169001 - 169060 5.5 + Prom 169014 - 169073 4.0 152 88 Tu 1 . + CDS 169184 - 170380 1248 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Term 170388 - 170414 -1.0 - TRNA 170457 - 170533 86.1 # Met CAT 0 0 - TRNA 170686 - 170762 86.1 # Met CAT 0 0 - TRNA 170797 - 170873 83.3 # Met CAT 0 0 + Prom 170993 - 171052 2.7 153 89 Tu 1 . + CDS 171079 - 172176 992 ## COG2821 Membrane-bound lytic murein transglycosylase + Prom 172187 - 172246 2.4 154 90 Tu 1 . + CDS 172285 - 173091 917 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 155 91 Op 1 7/0.089 - CDS 173170 - 173616 380 ## COG2166 SufE protein probably involved in Fe-S center assembly 156 91 Op 2 . - CDS 173616 - 174821 1209 ## COG0520 Selenocysteine lyase - Prom 174950 - 175009 3.9 + Prom 174934 - 174993 2.8 157 92 Tu 1 . + CDS 175014 - 175241 246 ## ECO111_3534 hypothetical protein + Prom 175474 - 175533 6.5 158 93 Op 1 6/0.127 + CDS 175605 - 176522 636 ## COG0583 Transcriptional regulator 159 93 Op 2 5/0.241 + CDS 176541 - 176936 471 ## COG2363 Uncharacterized small membrane protein 160 93 Op 3 . + CDS 176929 - 178029 1266 ## COG2933 Predicted SAM-dependent methyltransferase + Term 178039 - 178090 14.1 - Term 177873 - 177906 -0.1 161 94 Tu 1 4/0.354 - CDS 178074 - 178778 718 ## COG1349 Transcriptional regulators of sugar metabolism - Term 178792 - 178822 1.9 162 95 Op 1 5/0.241 - CDS 178836 - 179258 456 ## COG4154 Fucose dissimilation pathway protein FucU 163 95 Op 2 4/0.354 - CDS 179260 - 180678 1373 ## COG1070 Sugar (pentulose and hexulose) kinases 164 96 Op 1 3/0.456 - CDS 180798 - 182573 1928 ## COG2407 L-fucose isomerase and related proteins 165 96 Op 2 . - CDS 182605 - 183579 929 ## COG0738 Fucose permease - Prom 183690 - 183749 3.2 + Prom 184238 - 184297 6.2 166 97 Op 1 5/0.241 + CDS 184479 - 185126 795 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 167 97 Op 2 . + CDS 185138 - 186286 1486 ## COG1454 Alcohol dehydrogenase, class IV - Term 186309 - 186349 3.9 168 98 Tu 1 . - CDS 186371 - 187126 632 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) - Prom 187147 - 187206 2.5 - Term 187227 - 187267 4.3 169 99 Op 1 10/0.038 - CDS 187294 - 188661 1513 ## COG1760 L-serine deaminase 170 99 Op 2 4/0.354 - CDS 188715 - 190004 1702 ## COG0814 Amino acid permeases - Term 190519 - 190558 -0.3 171 100 Tu 1 6/0.127 - CDS 190567 - 191901 1481 ## COG1611 Predicted Rossmann fold nucleotide-binding protein - Prom 191967 - 192026 1.6 172 101 Tu 1 . - CDS 192045 - 192893 841 ## COG0780 Enzyme related to GTP cyclohydrolase I - Prom 192922 - 192981 4.7 + Prom 192868 - 192927 3.9 173 102 Tu 1 . + CDS 192962 - 193507 366 ## CKO_04149 SecY interacting protein Syd + Prom 194053 - 194112 8.8 174 103 Op 1 7/0.089 + CDS 194140 - 194469 414 ## COG3098 Uncharacterized protein conserved in bacteria 175 103 Op 2 5/0.241 + CDS 194469 - 195251 192 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 176 103 Op 3 4/0.354 + CDS 195271 - 195720 613 ## COG0716 Flavodoxins + Prom 195900 - 195959 3.1 177 104 Op 1 7/0.089 + CDS 196064 - 197422 1660 ## COG0477 Permeases of the major facilitator superfamily 178 104 Op 2 5/0.241 + CDS 197419 - 198759 1640 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 179 104 Op 3 1/0.785 + CDS 198781 - 200121 1884 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Term 200131 - 200167 3.0 + Prom 200123 - 200182 3.0 180 105 Tu 1 . + CDS 200205 - 201347 1256 ## COG1929 Glycerate kinase 181 106 Tu 1 . - CDS 202071 - 204827 2587 ## COG0642 Signal transduction histidine kinase - Prom 204886 - 204945 3.6 + Prom 204700 - 204759 1.5 182 107 Op 1 . + CDS 204885 - 206183 716 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 183 107 Op 2 1/0.785 + CDS 206284 - 208518 2417 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases + Term 208526 - 208577 15.7 184 108 Tu 1 5/0.241 + CDS 208592 - 209383 885 ## COG1694 Predicted pyrophosphatase + Term 209397 - 209450 5.6 + Prom 209503 - 209562 5.2 185 109 Op 1 8/0.076 + CDS 209608 - 211245 1646 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 211265 - 211302 7.1 186 109 Op 2 . + CDS 211332 - 212630 1441 ## COG0148 Enolase + Term 212652 - 212689 2.1 - Term 212647 - 212672 -0.5 187 110 Tu 1 . - CDS 212686 - 213510 758 ## COG1737 Transcriptional regulators - Prom 213639 - 213698 5.6 + Prom 213539 - 213598 4.0 188 111 Op 1 3/0.456 + CDS 213637 - 215232 1507 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 189 111 Op 2 . + CDS 215232 - 215921 780 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase 190 111 Op 3 . + CDS 215993 - 216664 213 ## PROTEIN SUPPORTED gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 191 112 Op 1 6/0.127 - CDS 216702 - 218180 1313 ## COG1070 Sugar (pentulose and hexulose) kinases 192 112 Op 2 . - CDS 218207 - 219505 1372 ## COG0477 Permeases of the major facilitator superfamily - Prom 219639 - 219698 4.0 + Prom 219742 - 219801 4.8 193 113 Tu 1 . + CDS 219951 - 220736 177 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 220765 - 220824 5.9 194 114 Op 1 5/0.241 + CDS 220847 - 222301 1752 ## COG0277 FAD/FMN-containing dehydrogenases + Term 222310 - 222345 6.5 195 114 Op 2 3/0.456 + CDS 222362 - 223711 1286 ## COG0477 Permeases of the major facilitator superfamily 196 114 Op 3 29/0.000 + CDS 223689 - 224471 634 ## COG2086 Electron transfer flavoprotein, beta subunit 197 114 Op 4 . + CDS 224468 - 225322 634 ## COG2025 Electron transfer flavoprotein, alpha subunit - Term 225312 - 225352 4.3 198 115 Op 1 2/0.595 - CDS 225399 - 225974 701 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 199 115 Op 2 12/0.013 - CDS 225996 - 226256 138 ## COG2440 Ferredoxin-like protein 200 115 Op 3 1/0.785 - CDS 226247 - 227545 958 ## COG0644 Dehydrogenases (flavoproteins) 201 115 Op 4 . - CDS 227599 - 227961 516 ## COG0720 6-pyruvoyl-tetrahydropterin synthase - Prom 228117 - 228176 3.5 + Prom 228035 - 228094 4.2 202 116 Op 1 11/0.013 + CDS 228268 - 230067 1953 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) 203 116 Op 2 11/0.013 + CDS 230067 - 231779 2128 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 204 116 Op 3 1/0.785 + CDS 231863 - 232597 1063 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes + Term 232698 - 232736 0.3 + Prom 232646 - 232705 5.2 205 117 Op 1 . + CDS 232763 - 235441 1650 ## COG1203 Predicted helicases 206 117 Op 2 . + CDS 235453 - 237009 1136 ## STM2943 cytoplasmic protein 207 117 Op 3 . + CDS 237006 - 237569 380 ## SC2874 putative transposase 208 117 Op 4 . + CDS 237580 - 238635 1238 ## ROD_30481 CRISPR-associated protein 209 117 Op 5 . + CDS 238681 - 239391 463 ## EcE24377A_3059 CRISPR-associated Cas5 family protein 210 117 Op 6 . + CDS 239457 - 240023 237 ## SC2871 putative cytoplasmic protein 211 117 Op 7 . + CDS 240020 - 240940 560 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 212 117 Op 8 . + CDS 240946 - 241233 111 ## SG2840 hypothetical protein + Term 241266 - 241326 0.3 213 118 Tu 1 . - CDS 241386 - 241910 -117 ## Ctu_10520 hypothetical protein 214 119 Tu 1 . - CDS 242029 - 242481 -302 ## Ctu_10250 hypothetical protein - Prom 242602 - 242661 3.8 - Term 244151 - 244179 1.4 215 120 Op 1 . - CDS 244198 - 245337 686 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 216 120 Op 2 . - CDS 245357 - 245815 418 ## Entcl_0867 hypothetical protein 217 120 Op 3 . - CDS 245836 - 246516 427 ## Entcl_0866 hypothetical protein - Prom 246548 - 246607 4.6 218 121 Tu 1 . + CDS 246941 - 247870 502 ## COG0583 Transcriptional regulator + Term 247901 - 247933 -0.3 219 122 Tu 1 . - CDS 247898 - 248737 882 ## COG2234 Predicted aminopeptidases - Prom 248971 - 249030 3.8 + Prom 249089 - 249148 3.8 220 123 Op 1 18/0.000 + CDS 249193 - 250101 1144 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 221 123 Op 2 7/0.089 + CDS 250111 - 251538 1813 ## COG2895 GTPases - Sulfate adenylate transferase subunit 1 222 123 Op 3 . + CDS 251538 - 252143 553 ## COG0529 Adenylylsulfate kinase and related kinases 223 123 Op 4 . + CDS 252191 - 252514 507 ## ROD_30601 hypothetical protein + Prom 252543 - 252602 3.0 224 124 Op 1 11/0.013 + CDS 252729 - 253040 182 ## COG2919 Septum formation initiator 225 124 Op 2 19/0.000 + CDS 253059 - 253769 300 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 226 124 Op 3 8/0.076 + CDS 253769 - 254248 627 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 227 124 Op 4 8/0.076 + CDS 254245 - 255294 890 ## COG0585 Uncharacterized conserved protein 228 124 Op 5 13/0.013 + CDS 255275 - 256036 711 ## COG0496 Predicted acid phosphatase 229 124 Op 6 11/0.013 + CDS 256030 - 256656 588 ## COG2518 Protein-L-isoaspartate carboxylmethyltransferase 230 125 Op 1 8/0.076 + CDS 256775 - 257902 469 ## COG0739 Membrane proteins related to metalloendopeptidases 231 125 Op 2 . + CDS 257965 - 258957 1256 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 258974 - 259016 11.0 - Term 258965 - 259000 3.1 232 126 Tu 1 . - CDS 259092 - 259496 347 ## COG1846 Transcriptional regulators - Prom 259605 - 259664 3.8 + Prom 259502 - 259561 2.3 233 127 Op 1 6/0.127 + CDS 259655 - 260248 683 ## COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase 234 127 Op 2 . + CDS 260248 - 261675 1877 ## COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 235 127 Op 3 . + CDS 261686 - 261907 283 ## SC2853 hypothetical protein + Term 261914 - 261957 1.0 - Term 261901 - 261938 -1.0 236 128 Tu 1 . - CDS 261992 - 264553 3061 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 264746 - 264805 3.3 + Prom 264415 - 264474 2.4 237 129 Tu 1 . + CDS 264569 - 264739 130 ## 238 130 Tu 1 . + CDS 265004 - 265132 75 ## gi|283835501|ref|ZP_06355242.1| hypothetical protein CIT292_09869 + Term 265320 - 265377 2.6 + Prom 266152 - 266211 3.5 239 131 Tu 1 . + CDS 266295 - 266465 58 ## gi|291086274|ref|ZP_06571440.1| conserved hypothetical protein + Term 266669 - 266707 0.6 240 132 Tu 1 . - CDS 266742 - 267326 30 ## gi|283835504|ref|ZP_06355245.1| conserved hypothetical protein - Prom 267377 - 267436 7.3 + Prom 268272 - 268331 5.9 241 133 Tu 1 . + CDS 268362 - 268532 198 ## gi|283835505|ref|ZP_06355246.1| hypothetical protein CIT292_09874 + Term 268602 - 268630 -0.1 242 134 Tu 1 . - CDS 268529 - 268675 66 ## KPK_1030 fic family protein - Prom 268801 - 268860 2.6 - Term 268816 - 268853 -0.9 243 135 Op 1 . - CDS 268969 - 269481 334 ## gi|283835506|ref|ZP_06355247.1| conserved hypothetical protein 244 135 Op 2 . - CDS 269481 - 270266 396 ## COG3710 DNA-binding winged-HTH domains - Prom 270385 - 270444 7.4 + Prom 270417 - 270476 4.6 245 136 Tu 1 . + CDS 270712 - 271317 521 ## YE105_C3240 putative DNA-binding transcriptional regulator - Term 271309 - 271353 4.5 246 137 Op 1 13/0.013 - CDS 271359 - 272732 1296 ## COG0845 Membrane-fusion protein 247 137 Op 2 3/0.456 - CDS 272719 - 274923 233 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 248 137 Op 3 . - CDS 275001 - 276344 1294 ## COG1538 Outer membrane protein - Prom 276509 - 276568 6.9 + Prom 276578 - 276637 9.3 249 138 Op 1 . + CDS 276677 - 284785 7649 ## Shewana3_0382 outer membrane adhesin like protein 250 138 Op 2 . + CDS 284837 - 285127 318 ## Pfl01_0132 hypothetical protein + Prom 285246 - 285305 2.9 251 139 Tu 1 . + CDS 285429 - 287288 1296 ## ESA_00983 hypothetical protein 252 140 Op 1 1/0.785 - CDS 287399 - 289333 2093 ## COG2200 FOG: EAL domain 253 140 Op 2 . - CDS 289343 - 289981 474 ## COG3672 Predicted periplasmic protein 254 140 Op 3 9/0.063 - CDS 290038 - 290931 590 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 255 140 Op 4 2/0.595 - CDS 290915 - 291847 755 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 256 140 Op 5 . - CDS 291840 - 294032 1894 ## COG2199 FOG: GGDEF domain - Prom 294194 - 294253 5.0 + Prom 294448 - 294507 5.0 257 141 Op 1 . + CDS 294642 - 296834 1359 ## COG2200 FOG: EAL domain 258 141 Op 2 . + CDS 296896 - 298986 1615 ## COG0840 Methyl-accepting chemotaxis protein 259 141 Op 3 13/0.013 + CDS 298983 - 300050 754 ## COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 260 141 Op 4 5/0.241 + CDS 300047 - 301459 1153 ## COG1352 Methylase of chemotaxis methyl-accepting proteins 261 141 Op 5 . + CDS 301471 - 303588 1835 ## COG0643 Chemotaxis protein histidine kinase and related kinases 262 141 Op 6 . + CDS 303611 - 303973 379 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 263 141 Op 7 . + CDS 304014 - 305663 1311 ## COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain 264 141 Op 8 . + CDS 305675 - 306199 627 ## COG0835 Chemotaxis signal transduction protein 265 141 Op 9 . + CDS 306183 - 306542 285 ## gi|283835528|ref|ZP_06355269.1| conserved hypothetical protein 266 142 Op 1 10/0.038 - CDS 306552 - 307409 707 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 267 142 Op 2 42/0.000 - CDS 307406 - 308263 1077 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 268 142 Op 3 25/0.000 - CDS 308260 - 309096 258 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 269 142 Op 4 . - CDS 309078 - 309995 1014 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin - Prom 310025 - 310084 4.6 - Term 310026 - 310064 2.5 270 143 Op 1 . - CDS 310178 - 310951 614 ## CKO_03723 hypothetical protein 271 143 Op 2 . - CDS 310962 - 311969 990 ## CKO_03722 hypothetical protein - Prom 312148 - 312207 4.5 + Prom 312165 - 312224 6.2 272 144 Tu 1 . + CDS 312409 - 313779 1015 ## COG0015 Adenylosuccinate lyase - Term 313541 - 313569 -1.0 273 145 Tu 1 . - CDS 313819 - 314712 669 ## COG1737 Transcriptional regulators - Prom 314955 - 315014 7.6 + Prom 314964 - 315023 6.6 274 146 Op 1 . + CDS 315066 - 316433 1390 ## COG3069 C4-dicarboxylate transporter + Term 316439 - 316474 4.2 275 146 Op 2 . + CDS 316485 - 318179 1243 ## COG0281 Malic enzyme 276 146 Op 3 . + CDS 318241 - 318609 314 ## CKO_04089 hypothetical protein - Term 318598 - 318650 3.8 277 147 Tu 1 . - CDS 318705 - 320768 2280 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains - Prom 320827 - 320886 3.5 - Term 320906 - 320952 -0.3 278 148 Op 1 4/0.354 - CDS 320991 - 322001 1280 ## COG0309 Hydrogenase maturation factor 279 148 Op 2 13/0.013 - CDS 321998 - 323119 949 ## COG0409 Hydrogenase maturation factor 280 148 Op 3 8/0.076 - CDS 323120 - 323392 339 ## COG0298 Hydrogenase maturation factor 281 148 Op 4 11/0.013 - CDS 323383 - 324255 839 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 282 149 Tu 1 . - CDS 324359 - 324730 140 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) - Prom 324850 - 324909 3.4 283 150 Tu 1 . + CDS 324929 - 325387 609 ## CKO_04081 formate hydrogenlyase regulatory protein HycA 284 151 Op 1 4/0.354 + CDS 325532 - 326143 386 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 285 151 Op 2 10/0.038 + CDS 326140 - 327966 2505 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 286 151 Op 3 7/0.089 + CDS 327969 - 328892 1275 ## COG0650 Formate hydrogenlyase subunit 4 287 151 Op 4 5/0.241 + CDS 328910 - 330619 2267 ## COG3261 Ni,Fe-hydrogenase III large subunit 288 151 Op 5 6/0.127 + CDS 330629 - 331171 564 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 289 151 Op 6 . + CDS 331171 - 331938 876 ## COG3260 Ni,Fe-hydrogenase III small subunit 290 151 Op 7 . + CDS 331935 - 332345 456 ## SARI_00126 hypothetical protein 291 151 Op 8 . + CDS 332371 - 332808 641 ## COG0680 Ni,Fe-hydrogenase maturation factor + Term 332815 - 332856 8.4 292 152 Tu 1 . - CDS 332854 - 333105 224 ## ROD_30971 hypothetical protein - Prom 333144 - 333203 2.0 + Prom 333162 - 333221 3.1 293 153 Tu 1 . + CDS 333298 - 333747 404 ## COG1609 Transcriptional regulators + Term 333758 - 333799 9.5 294 154 Tu 1 . - CDS 333711 - 333878 88 ## - Prom 334003 - 334062 1.6 + Prom 333786 - 333845 3.9 295 155 Tu 1 . + CDS 333893 - 334438 412 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 + Term 334472 - 334518 1.1 + Prom 334463 - 334522 4.7 296 156 Tu 1 . + CDS 334582 - 336822 1834 ## COG0068 Hydrogenase maturation factor 297 157 Op 1 5/0.241 - CDS 336900 - 338033 1338 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 298 157 Op 2 . - CDS 338030 - 339478 1686 ## COG0426 Uncharacterized flavoproteins - Prom 339619 - 339678 5.4 + Prom 339524 - 339583 7.1 299 158 Tu 1 . + CDS 339667 - 341184 1443 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 300 159 Op 1 . - CDS 341181 - 342146 1213 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 301 159 Op 2 4/0.354 - CDS 342139 - 342912 828 ## COG1349 Transcriptional regulators of sugar metabolism - Term 342925 - 342962 1.1 302 159 Op 3 5/0.241 - CDS 342983 - 343342 338 ## COG4578 Glucitol operon activator - Prom 343383 - 343442 2.2 - Term 343389 - 343440 0.8 303 160 Op 1 5/0.241 - CDS 343444 - 344223 906 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 304 160 Op 2 6/0.127 - CDS 344241 - 344603 422 ## COG3731 Phosphotransferase system sorbitol-specific component IIA 305 160 Op 3 6/0.127 - CDS 344617 - 345588 1167 ## COG3732 Phosphotransferase system sorbitol-specific component IIBC 306 160 Op 4 . - CDS 345585 - 346148 696 ## COG3730 Phosphotransferase system sorbitol-specific component IIC - Prom 346188 - 346247 6.4 + Prom 346190 - 346249 5.0 307 161 Tu 1 . + CDS 346414 - 347493 1183 ## COG2951 Membrane-bound lytic murein transglycosylase B + Prom 347601 - 347660 4.7 308 162 Op 1 12/0.013 + CDS 347688 - 348185 320 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 309 162 Op 2 14/0.013 + CDS 348278 - 349342 1574 ## COG0468 RecA/RadA recombinase + Term 349366 - 349407 7.1 310 163 Tu 1 5/0.241 + CDS 349415 - 349915 459 ## COG2137 Uncharacterized protein conserved in bacteria 311 164 Tu 1 . + CDS 350043 - 352670 2890 ## COG0013 Alanyl-tRNA synthetase + Term 352691 - 352726 6.1 + Prom 352800 - 352859 4.4 312 165 Tu 1 . + CDS 352909 - 353094 204 ## PROTEIN SUPPORTED gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1 + TRNA 353433 - 353525 72.5 # Ser GCT 0 0 + TRNA 353529 - 353605 87.2 # Arg ACG 0 0 + TRNA 353667 - 353743 87.2 # Arg ACG 0 0 + TRNA 353776 - 353852 87.2 # Arg ACG 0 0 + TRNA 354016 - 354092 87.2 # Arg ACG 0 0 + Prom 354078 - 354137 9.6 313 166 Tu 1 . + CDS 354268 - 354834 372 ## COG0637 Predicted phosphatase/phosphohexomutase + Prom 354842 - 354901 2.0 314 167 Op 1 5/0.241 + CDS 354975 - 355259 170 ## COG1238 Predicted membrane protein 315 167 Op 2 6/0.127 + CDS 355337 - 356893 1640 ## COG2918 Gamma-glutamylcysteine synthetase + Term 356907 - 356938 2.5 + Prom 356929 - 356988 2.5 316 168 Tu 1 . + CDS 357043 - 357558 605 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 357633 - 357664 3.4 - Term 357621 - 357652 3.4 317 169 Op 1 19/0.000 - CDS 357661 - 359187 1585 ## COG0477 Permeases of the major facilitator superfamily 318 169 Op 2 7/0.089 - CDS 359204 - 360376 1245 ## COG1566 Multidrug resistance efflux pump - Prom 360435 - 360494 2.4 - Term 360423 - 360457 3.5 319 170 Op 1 . - CDS 360504 - 361034 579 ## COG1846 Transcriptional regulators - Prom 361058 - 361117 7.0 320 170 Op 2 . - CDS 361125 - 361460 418 ## CKO_04032 hypothetical protein 321 170 Op 3 4/0.354 - CDS 361450 - 362187 572 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - Prom 362208 - 362267 4.9 322 171 Tu 1 . - CDS 362310 - 363494 1272 ## COG0477 Permeases of the major facilitator superfamily - Prom 363521 - 363580 3.2 323 172 Op 1 14/0.013 - CDS 363690 - 364685 1229 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components 324 172 Op 2 16/0.000 - CDS 364754 - 365818 1392 ## COG4176 ABC-type proline/glycine betaine transport system, permease component 325 172 Op 3 5/0.241 - CDS 365811 - 367013 1040 ## COG4175 ABC-type proline/glycine betaine transport system, ATPase component - Term 367316 - 367358 2.1 326 173 Op 1 24/0.000 - CDS 367368 - 368327 954 ## COG0208 Ribonucleotide reductase, beta subunit 327 173 Op 2 18/0.000 - CDS 368338 - 370482 2226 ## COG0209 Ribonucleotide reductase, alpha subunit 328 173 Op 3 11/0.013 - CDS 370455 - 370865 267 ## COG1780 Protein involved in ribonucleotide reduction 329 173 Op 4 2/0.595 - CDS 370862 - 371107 247 ## COG0695 Glutaredoxin and related proteins - Prom 371173 - 371232 3.9 - Term 371126 - 371157 0.0 330 174 Tu 1 . - CDS 371389 - 371820 528 ## COG2128 Uncharacterized conserved protein - Prom 371842 - 371901 3.5 + Prom 371812 - 371871 3.6 331 175 Tu 1 . + CDS 371911 - 373245 838 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Prom 373284 - 373343 2.5 332 176 Tu 1 . + CDS 373369 - 373719 443 ## G2583_3317 hypothetical protein - Term 373709 - 373745 7.1 333 177 Tu 1 . - CDS 373756 - 374205 422 ## CKO_04017 hypothetical protein - Prom 374283 - 374342 8.8 + Prom 374631 - 374690 4.0 334 178 Tu 1 . + CDS 374761 - 375162 398 ## COG2916 DNA-binding protein H-NS - Term 375157 - 375191 6.3 335 179 Op 1 . - CDS 375198 - 375377 237 ## Ent638_3148 hypothetical protein 336 179 Op 2 7/0.089 - CDS 375458 - 375985 510 ## COG0607 Rhodanese-related sulfurtransferase 337 179 Op 3 . - CDS 375995 - 376294 300 ## COG0640 Predicted transcriptional regulators - Prom 376323 - 376382 7.7 + Prom 376281 - 376340 6.1 338 180 Tu 1 . + CDS 376479 - 376637 262 ## COG0401 Uncharacterized homolog of Blt101 + Term 376690 - 376722 3.4 339 181 Op 1 1/0.785 - CDS 376634 - 377326 937 ## COG1802 Transcriptional regulators - Term 377334 - 377366 4.3 340 181 Op 2 4/0.354 - CDS 377372 - 378772 1738 ## COG1113 Gamma-aminobutyrate permease and related permeases 341 182 Op 1 12/0.013 - CDS 378913 - 380196 1520 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases 342 182 Op 2 3/0.456 - CDS 380222 - 381670 1827 ## COG1012 NAD-dependent aldehyde dehydrogenases 343 182 Op 3 . - CDS 381694 - 382962 1254 ## COG0579 Predicted dehydrogenase 344 182 Op 4 . - CDS 382982 - 383959 1169 ## SFV_2844 hypothetical protein - Prom 384090 - 384149 6.2 345 183 Tu 1 . - CDS 384217 - 384819 616 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 384878 - 384937 2.4 + Prom 384826 - 384885 3.1 346 184 Tu 1 . + CDS 384918 - 385808 827 ## COG0583 Transcriptional regulator + Term 385812 - 385849 7.0 - Term 385792 - 385842 11.1 347 185 Op 1 . - CDS 385843 - 387357 1877 ## COG3333 Uncharacterized protein conserved in bacteria 348 185 Op 2 . - CDS 387368 - 387799 591 ## SG2692 hypothetical protein 349 185 Op 3 . - CDS 387817 - 388794 1278 ## COG3181 Uncharacterized protein conserved in bacteria - Prom 388888 - 388947 4.1 + Prom 388742 - 388801 4.2 350 186 Op 1 40/0.000 + CDS 388948 - 389622 774 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 351 186 Op 2 . + CDS 389609 - 391021 1234 ## COG0642 Signal transduction histidine kinase + Term 391264 - 391296 -0.7 + Prom 391369 - 391428 6.9 352 187 Op 1 . + CDS 391472 - 392887 892 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 353 187 Op 2 . + CDS 392877 - 394163 704 ## EcolC_3173 putative capsular polysaccharide biosynthesis protein 354 187 Op 3 7/0.089 + CDS 394165 - 394722 245 ## COG1596 Periplasmic protein involved in polysaccharide export 355 187 Op 4 . + CDS 394725 - 396854 1728 ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis 356 187 Op 5 . + CDS 396851 - 398062 886 ## EcolC_3176 putative capsular polysaccharide bisynthesis protein 357 187 Op 6 . + CDS 398059 - 399429 1265 ## EcolC_3177 putative capsular polysaccharide bisynthesis protein 358 187 Op 7 26/0.000 + CDS 399434 - 400423 911 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 359 187 Op 8 25/0.000 + CDS 400438 - 401649 1001 ## COG0438 Glycosyltransferase 360 187 Op 9 . + CDS 401651 - 402763 780 ## COG0438 Glycosyltransferase 361 187 Op 10 . + CDS 402766 - 403173 137 ## EcolC_3181 hypothetical protein 362 187 Op 11 . + CDS 403205 - 404596 957 ## EcolC_3182 hypothetical protein - Term 404598 - 404630 0.5 363 188 Op 1 . - CDS 404643 - 405659 762 ## COG1087 UDP-glucose 4-epimerase 364 188 Op 2 . - CDS 405727 - 406635 459 ## EcolC_3184 hypothetical protein - Prom 406802 - 406861 3.8 - Term 406842 - 406875 1.3 365 189 Tu 1 . - CDS 406884 - 407519 656 ## COG0288 Carbonic anhydrase - Prom 407566 - 407625 6.0 366 190 Tu 1 . + CDS 407848 - 408354 314 ## Entcl_2307 hypothetical protein + Prom 408609 - 408668 4.8 367 191 Op 1 5/0.241 + CDS 408814 - 409428 434 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 368 191 Op 2 . + CDS 409433 - 412675 1866 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain + Term 412679 - 412730 6.5 - Term 412664 - 412715 14.1 369 192 Tu 1 . - CDS 412750 - 413379 621 ## Kvar_0610 hypothetical protein 370 193 Op 1 . + CDS 413739 - 414257 326 ## COG3247 Uncharacterized conserved protein 371 193 Op 2 . + CDS 414289 - 414603 255 ## Kvar_0608 acid-resistance protein 372 194 Op 1 27/0.000 - CDS 414826 - 417942 2620 ## COG0841 Cation/multidrug efflux pump 373 194 Op 2 . - CDS 417971 - 419128 899 ## COG0845 Membrane-fusion protein - Prom 419259 - 419318 6.3 374 195 Tu 1 . - CDS 419398 - 419964 504 ## COG3065 Starvation-inducible outer membrane lipoprotein - Prom 420049 - 420108 7.5 375 196 Tu 1 . - CDS 420207 - 421061 1038 ## COG1737 Transcriptional regulators - Prom 421212 - 421271 7.3 + Prom 421210 - 421269 6.9 376 197 Op 1 1/0.785 + CDS 421355 - 422860 1445 ## COG1012 NAD-dependent aldehyde dehydrogenases 377 197 Op 2 . + CDS 422872 - 424797 1822 ## COG3962 Acetolactate synthase + Term 424938 - 424979 1.3 378 198 Op 1 1/0.785 + CDS 425142 - 426128 987 ## COG0673 Predicted dehydrogenases and related proteins 379 198 Op 2 16/0.000 + CDS 426167 - 427096 1135 ## COG1879 ABC-type sugar transport system, periplasmic component 380 198 Op 3 21/0.000 + CDS 427152 - 428699 177 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 381 198 Op 4 3/0.456 + CDS 428711 - 429739 1401 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 382 198 Op 5 2/0.595 + CDS 429748 - 430881 1543 ## COG0673 Predicted dehydrogenases and related proteins 383 198 Op 6 5/0.241 + CDS 430921 - 432798 1921 ## COG0524 Sugar kinases, ribokinase family 384 198 Op 7 6/0.127 + CDS 432813 - 433703 1187 ## COG1082 Sugar phosphate isomerases/epimerases 385 198 Op 8 . + CDS 433713 - 434531 919 ## COG3718 Uncharacterized enzyme involved in inositol metabolism + Term 434617 - 434655 2.1 - Term 434593 - 434650 11.6 386 199 Tu 1 . - CDS 434662 - 435018 362 ## ROD_31501 hypothetical protein - Prom 435099 - 435158 4.9 + Prom 435521 - 435580 3.0 387 200 Tu 1 . + CDS 435609 - 436472 292 ## KPN_02965 hypothetical protein + Term 436588 - 436617 1.6 388 201 Tu 1 . - CDS 437255 - 440158 146 ## Hoch_1040 hypothetical protein - Prom 440344 - 440403 7.9 389 202 Tu 1 . - CDS 440423 - 441292 725 ## COG0582 Integrase - Prom 441521 - 441580 1.8 390 203 Op 1 7/0.089 + CDS 442323 - 442553 233 ## COG4456 Virulence-associated protein and related proteins 391 203 Op 2 . + CDS 442553 - 442957 524 ## COG1487 Predicted nucleic acid-binding protein, contains PIN domain + Term 443013 - 443050 0.5 392 204 Tu 1 . - CDS 443176 - 443709 169 ## gi|291086315|ref|ZP_06355397.2| hypothetical protein CIT292_10042 393 205 Op 1 . - CDS 444081 - 445100 229 ## Bcep18194_B1165 hypothetical protein 394 205 Op 2 . - CDS 445111 - 446007 110 ## COG2421 Predicted acetamidase/formamidase 395 205 Op 3 . - CDS 446036 - 446953 249 ## Bcep18194_B1164 hypothetical protein - Term 447893 - 447934 3.1 396 206 Op 1 1/0.785 - CDS 448051 - 450120 1812 ## COG5519 Superfamily II helicase and inactivated derivatives 397 206 Op 2 . - CDS 450156 - 450371 227 ## COG3311 Predicted transcriptional regulator - Prom 450498 - 450557 5.8 398 207 Op 1 . - CDS 450900 - 453017 235 ## Swoo_0596 hypothetical protein 399 207 Op 2 . - CDS 453004 - 455334 186 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family - Prom 455384 - 455443 6.8 400 208 Op 1 . - CDS 455467 - 456108 486 ## KPN_02944 hypothetical protein 401 208 Op 2 . - CDS 456110 - 457357 346 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Prom 457429 - 457488 2.2 - Term 457869 - 457900 -0.7 402 209 Op 1 13/0.013 - CDS 457960 - 459150 1191 ## COG0845 Membrane-fusion protein 403 209 Op 2 3/0.456 - CDS 459131 - 461317 2120 ## COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 404 209 Op 3 . - CDS 461314 - 462723 1333 ## COG1538 Outer membrane protein 405 209 Op 4 . - CDS 462795 - 474236 8888 ## COG1404 Subtilisin-like serine proteases - Term 474747 - 474785 4.5 406 210 Tu 1 . - CDS 474801 - 475283 522 ## COG0691 tmRNA-binding protein - Prom 475397 - 475456 3.7 + Prom 475356 - 475415 6.1 407 211 Op 1 9/0.063 + CDS 475438 - 475881 443 ## COG2867 Oligoketide cyclase/lipid transport protein 408 211 Op 2 . + CDS 475865 - 476161 285 ## COG2914 Uncharacterized protein conserved in bacteria + Term 476176 - 476204 2.3 - Term 476156 - 476200 10.1 409 212 Op 1 . - CDS 476211 - 476555 400 ## COG2913 Small protein A (tmRNA-binding) - Prom 476608 - 476667 3.0 410 212 Op 2 17/0.000 - CDS 476705 - 478366 1801 ## COG0497 ATPase involved in DNA repair - Prom 478391 - 478450 1.9 - Term 478376 - 478415 -0.9 411 212 Op 3 . - CDS 478452 - 479453 919 ## COG0061 Predicted sugar kinase + Prom 479355 - 479414 3.9 412 213 Tu 1 . + CDS 479452 - 480045 856 ## COG0576 Molecular chaperone GrpE (heat shock protein) 413 214 Op 1 4/0.354 - CDS 480096 - 481385 1488 ## COG4536 Putative Mg2+ and Co2+ transporter CorB 414 214 Op 2 . - CDS 481404 - 482195 819 ## COG4137 ABC-type uncharacterized transport system, permease component - Prom 482225 - 482284 4.3 + Prom 482245 - 482304 5.4 415 215 Op 1 23/0.000 + CDS 482361 - 483722 1685 ## COG0541 Signal recognition particle GTPase + Term 483850 - 483888 -0.9 + Prom 483847 - 483906 5.2 416 215 Op 2 12/0.013 + CDS 483938 - 484222 458 ## PROTEIN SUPPORTED gi|161502226|ref|YP_001569338.1| 30S ribosomal protein S16 417 215 Op 3 . + CDS 484200 - 484241 49 ## PROTEIN SUPPORTED gi|213976642|ref|ZP_03403901.1| 30S ribosomal protein S16 418 215 Op 4 30/0.000 + CDS 484241 - 484789 192 ## PROTEIN SUPPORTED gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 419 215 Op 5 33/0.000 + CDS 484867 - 485601 473 ## COG0336 tRNA-(guanine-N1)-methyltransferase 420 215 Op 6 . + CDS 485641 - 485988 568 ## PROTEIN SUPPORTED gi|152971456|ref|YP_001336565.1| 50S ribosomal protein L19 421 215 Op 7 . + CDS 485891 - 486106 73 ## + Term 486131 - 486172 1.6 422 216 Op 1 6/0.127 - CDS 486128 - 486610 581 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 423 216 Op 2 . - CDS 486623 - 487762 876 ## COG2199 FOG: GGDEF domain 424 216 Op 3 . - CDS 487839 - 488357 156 ## CKO_03923 hypothetical protein - Prom 488412 - 488471 3.7 425 217 Tu 1 . - CDS 488516 - 488890 319 ## CKO_03922 hypothetical protein - Prom 488993 - 489052 6.8 + Prom 488955 - 489014 6.8 426 218 Op 1 7/0.089 + CDS 489106 - 490176 1142 ## COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 427 218 Op 2 . + CDS 490187 - 491308 1287 ## COG0287 Prephenate dehydrogenase + Term 491367 - 491405 5.7 428 219 Tu 1 . - CDS 491402 - 492562 1242 ## COG0077 Prephenate dehydratase - Prom 492727 - 492786 3.5 + Prom 492514 - 492573 1.7 429 220 Tu 1 . + CDS 492602 - 492736 79 ## + Term 492853 - 492888 0.2 - Term 492760 - 492787 1.5 430 221 Tu 1 . - CDS 492813 - 493151 533 ## PROTEIN SUPPORTED gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA - Prom 493330 - 493389 4.9 - Term 493365 - 493407 9.8 431 222 Tu 1 . - CDS 493421 - 494158 827 ## COG4105 DNA uptake lipoprotein - Prom 494220 - 494279 2.4 + Prom 494179 - 494238 3.9 432 223 Op 1 11/0.013 + CDS 494290 - 495270 1145 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 433 223 Op 2 7/0.089 + CDS 495348 - 495998 569 ## COG1496 Uncharacterized conserved protein + Term 496051 - 496096 2.0 + Prom 496018 - 496077 7.0 434 224 Tu 1 . + CDS 496128 - 498701 1871 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 498721 - 498751 3.0 Predicted protein(s) >gi|283548476|gb|GG730301.1| GENE 1 1720 - 1956 210 78 aa, chain + ## HITS:1 COG:STM2760 KEGG:ns NR:ns ## COG: STM2760 COG0582 # Protein_GI_number: 16766072 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1 77 1 76 291 83 62.0 1e-16 MGRLMQEMSRLARQAGGSNKTVHDRMALAQRFCERLVVVQNIQIRQVAQLKARHIEDYIR ERLAQGIARRSLQNEMAS >gi|283548476|gb|GG730301.1| GENE 2 2049 - 2903 608 284 aa, chain + ## HITS:1 COG:YPO1092 KEGG:ns NR:ns ## COG: YPO1092 COG0582 # Protein_GI_number: 16121393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 1 284 11 293 298 317 61.0 2e-86 MSRLARQAGGSNKTVHDRMALAQRFCERLVVVQNIQIRQVAQLKARHIEDYIRERLAQGI ARRSLQNEMAAIRSLLVQAGRDKLAVSERISNRALGLAGAPRTGTHQAIPAAYYREVLDA ARAKDAGLAAALELSRLMGLRSQEAVQSAQSLRTWRQAIEGGEPRLTVVFGTKGGRSRET RILDTIAVRKALDNAIAVVESRNSRLIDKPDLKTAMKYWHSQASRIGLTGAYSPHSLRYA WAQDAIHHYLAQGFSEKEALAQTAMDLGHGDGRGRYVAQVYGKK >gi|283548476|gb|GG730301.1| GENE 3 3035 - 4300 991 421 aa, chain - ## HITS:1 COG:DR1362 KEGG:ns NR:ns ## COG: DR1362 COG0673 # Protein_GI_number: 15806379 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Deinococcus radiodurans # 6 413 5 398 403 259 40.0 7e-69 MSDSPVTVLIVGAGARGEIYARYALEHPERMQVVAVAEPRRAYRRLLAERHAIPPERVWR DWRDALALGRVADAVFICTPDNEHTAPALEFTRQGYDMLLQKPLSPQEDECREIVRVAQA NGILFAVAHVLRYTRYTQALKALLADRAIGELISLQHLEPVGWWHQAHSFVRGNWRNTHE AAFMLLAKSCHDIDWIQYVMDAPCEAVSSFGNLSHFTPENQPAGAAARCTECRPETESTC PYSALKIYTGEHPFCTPGFLSVLTPDPTAENILNALNTGPYGRCVYRCDNNVADHQVVNM RFAGGKTASFTMTAFIPMAKRQTRLFGSHGCIEGDGRILKVRHFSTNQETVYDTRAGAPE TQHAGHSGGDLALVARFIDAVSQRSPGYILSGPQATLESHRVVFAAERSRRQGQTIHLSQ E >gi|283548476|gb|GG730301.1| GENE 4 4282 - 6972 2133 896 aa, chain - ## HITS:1 COG:SSO3039 KEGG:ns NR:ns ## COG: SSO3039 COG4354 # Protein_GI_number: 15899746 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted bile acid beta-glucosidase # Organism: Sulfolobus solfataricus # 15 435 14 377 803 86 25.0 2e-16 MTTHSGSTAREVRFPLGGIGTGCISLAGNGHLTDVEIFNHPDKGYHHGYTHFAVKAERNG ALVDARILQGDWQGNACGQWQIHDRLRKRHTGYGVGPDAETLAGMPHFAHSEFDGEFPMA QMSFSDPEFPGNIRMLAFNPFIPCDEDNSSLPLAWFELEVENTTDAALDYTLCLSLCNGL APDSTHNRHEIREDRHMMTLTQRHYPADDPRYAELATTTDAQDVSWQTYWYRGDWFDSLT MFWRDFCGQPRLPEREYTQSQPGFADHASLAAHLHLAAGERGRVRFWTGWYCPVTYNYWT DWRDRATQELVHYDDYRGQKTWKNHYATRFTDVNAVLDYAVSNAEFLFSRTQAFHDALHD SSLPDSVRDAVSANLAVLKSPTCLRLEDGSLWGWEGVLEDIGCCEGSCTHVWHYALALPW LFPRLSRSMRDLNQRHNLRPSGSLRFRLRLPPGDDPFEFRACADGQFGEVLAIYRDWLLC GDRAWLEEKWSAVRDMLRFAWNPDNPDQWDPEQRGVLTGRQHHTLDMELFGPNPWLTGLY IAALEAGCAIANHLGHNDDAMLWQDIARRGRVTLRERLFNGEYFQQVIDLANRDTLAPWR TSAESADYGLSGDVWQQYWCEENHEVKYQFGSGCHIDQLMGQWFAGLCGLPPVFDPGQTQ RALRALWQYNFVSARHHTNPCRLYGLNDEQGVSICSWPTGDMPAIPVPYAQEMMTGFEYQ LAALMVASGMATEGETLTRAIRDRYRGDNRNPWNEMECGSHYARSMASYGLLLAYSGVRY CADTGHLAFHPALTPGHHYYFWSAGDAWGTVSATTHTCTLTVIHGTLTLNEFGWPFDLPL WRITLNNAPLEAGEDRRHTLRFPEGITLNDGDRLRILLRDTRLTHTEEETACLTHP >gi|283548476|gb|GG730301.1| GENE 5 6969 - 8363 1381 464 aa, chain - ## HITS:1 COG:ECs5102 KEGG:ns NR:ns ## COG: ECs5102 COG2211 # Protein_GI_number: 15834356 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli O157:H7 # 29 440 6 428 469 168 27.0 2e-41 MDIHEPATRIQAAPPFAASGTVSHASLASYVLGGIGDNVICTMIVTFLMLYYTDYVGIPA ATVGTIFLLTRIWDTLSDLVWGWIFDNTHTRLGRFRPWLLYSGIVCALAMVATFSIPQMS MGATIAWAGITYFLLSTSYTAFDVPYWSLATVITRNPESRNRVVVATRIGGTCGSWLASV VTLPLLALLANNWSQLAVIYAVFFLVCALVNFSGVRELPTPPSEGSAIHSWRVYPELLRH NRPLVLLMGFWFLLNFVLASRSGFCLYYFKYLVKSDAAMTSYLGVSTLAAMAGAALTPLL VNRVERRVTGSLACALAGLLCVLTFFITSVPVWFAVALSSLPHLLFGMLGVLLGTLLPDV AAWHEYHHHRQAGGMIFSLNLFQLKFSGAIGGAAAGFVLGFIGYVPNEAQSGFTLSGISA AFTLIPGLILLVCPLILWRYPLTFAGNRRIADALRLRDNQEVSS >gi|283548476|gb|GG730301.1| GENE 6 8350 - 8487 107 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283835268|ref|ZP_06355009.1| ## NR: gi|283835268|ref|ZP_06355009.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 45 1 45 45 68 100.0 2e-10 MQTTILSVLHPQVVTATAHGDSAVIPLPSSLFRTLRPAGGLHGHS >gi|283548476|gb|GG730301.1| GENE 7 8561 - 8857 233 98 aa, chain - ## HITS:1 COG:STM2749 KEGG:ns NR:ns ## COG: STM2749 COG3423 # Protein_GI_number: 16766061 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 2 79 5 82 94 98 69.0 3e-21 MTKQDWHPAYIIAALHKRGTSLAALSRQAGLASSTLANALTRPCPKGEWLIASALKVHPA TIWPTRYDGQEAYRLPKHPQPGMKPALTVHNFPVPEKH >gi|283548476|gb|GG730301.1| GENE 8 8934 - 9278 193 114 aa, chain + ## HITS:1 COG:VC0176 KEGG:ns NR:ns ## COG: VC0176 COG1396 # Protein_GI_number: 15640206 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Vibrio cholerae # 14 100 10 96 102 73 45.0 7e-14 MEKRLRQRDVFIRRLKEARQRLDISQAAVGIAAAVDPSVASTRFNRYEKGIHEPDMETAA RIADVLSVPLPWLFTSDENLAELILNFASLSPDLQLHLLEASRQMISISSEDDA >gi|283548476|gb|GG730301.1| GENE 9 10487 - 11776 398 429 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 35 401 43 402 406 157 29 5e-37 MPLSDTAIRNAKPLDKPYKLTDAQGLYLLIKPNGSKLWQLKYRFGGKEKKLAFGAYPVVS LANARKLREEAKATLSAGDDPGEKKRQEKQTKKSGNTFEEVARKWLAKNIRWSENHAAKI QRSLELHVFPLIGKFPVADLKTADLLIPLRVAEKKGNLETAARIQQRTTAIMRYAVQESL IASNPANDLTGAIEPPQKNHYPALPLERLQELLEHIESYPGRLLTRLAVLLNLLIFIRSS ELRFARWTEIDLDGAMWTIPAQRESIPDVRYSERGAKMKTPHLVPLSKQAVTVLKQLKLL SGNGVLLFPGDHDPRKPMSENTINKALRTMGYDTKVDVCGHGFRTMACSALIESGRWSKD AVERQMSHQERNSVRAAYIHKAEHLDERTQMMQWWSDYLDACRQKFIPPYRYEQRSEVKR SEVKRSEVK >gi|283548476|gb|GG730301.1| GENE 10 12120 - 12827 547 235 aa, chain - ## HITS:1 COG:STM3115 KEGG:ns NR:ns ## COG: STM3115 COG1811 # Protein_GI_number: 16766416 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, possible Na+ channel or pump # Organism: Salmonella typhimurium LT2 # 1 235 1 235 235 330 87.0 2e-90 MVIGPFINGSAILFGGVLGALLSQHLPERIRVSMTSIFGLCSLGIGILLVIKCANLPVMV LATLVGALIGEFCHLEKGINTAIAKVQRLFSRSDANATHESFIQSYVAIIVLFCASGTGI FGAIHEGMTGDPNILIAKSFLDFFTAIIFACSLGIAVSAICVPMLAIQLTLATCAALILP LTTPAMMADFSAVGGLLLLATGLRICGIKMFAVVNMLPALLLAMPLSAAWTAFFA >gi|283548476|gb|GG730301.1| GENE 11 13297 - 15432 2202 711 aa, chain + ## HITS:1 COG:ECs3841 KEGG:ns NR:ns ## COG: ECs3841 COG1982 # Protein_GI_number: 15833095 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Escherichia coli O157:H7 # 1 711 21 731 731 1353 88.0 0 MKSMKIAASGELVSRLSSHRQVVSLDSTDFTDVAAVVITVADSRSGILALLKRTGFHLPV FLFAESDVEMPAGVNAVISGQAQEWLELESAACQYEDDLLPPFYDTLTQYVEMGNSTFAC PGHQHGEFFKKHPAGRHFYEFFGENLFRADMCNADVKLGDLLIHEGSAKHAQKFAAKVFH ADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP FGFIGGIDEHCFDEEYLRQQIRAVAPQKADQPRPFRLAIIQLGTYDGTIYNARQVIDKIG SLCDYILFDSAWVGYEQFIPMMADSSPLLLDLNANDPGIFVTQSVHKQQAGFSQTSQIHK KDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVALG VEARKAIITRCKMIQPFIPPMVDGKPWETYPTAVIASERCFFSFEPGAKWHGFSGYARDQ YFVDPCKLLLTTPGIDAQTGQYTDFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAES AEKMAQLVAMLAQFEQHIENDTPLSEVLPTIVNKYPVRYRDYTLRELCQEMHSLYVNFDV KDLQKAMFRQESLPAVAINPQDANSAFIRGDVELVRICDAAGRIAAEGALPYPPGVLCVV PGEIWGGAVQQYFLALEEGVNLLPGFSPELQGVYSATDADGIKRLYGYVLK >gi|283548476|gb|GG730301.1| GENE 12 15520 - 16776 1525 418 aa, chain - ## HITS:1 COG:STM3113 KEGG:ns NR:ns ## COG: STM3113 COG0477 # Protein_GI_number: 16766414 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 418 1 418 418 715 94.0 0 MNLKLQLKVLSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVYSSLGIAAVFMPTLLGI VADKWISAKWVYTICHLVGAATLFAAAEVTTPGAMFFVILLNSLAYMPTLGLINTISYYR LQSAGMDIVTDFPPIRIWGTIGFILAMWGVSFSGFELSHMQLYIGATLSVLLALFTLTLP HIPVANQQKNQSWSSMLGLDAFALFKNKRMAIFFIFSMMLGAELQITNMFGNTFLHSFDN NPLFSGSFIVEHASVMMSISQISETLFILTIPFFLSRYGIKNVMLISIVAWMLRFGLFAY GDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMMTNGFGCIL GGLVSGKVVEHYTLNGITDWQTVWLIFAGYSLVLAFAFVALFKYKHVRTPAGAQTIAH >gi|283548476|gb|GG730301.1| GENE 13 16987 - 18072 1089 361 aa, chain - ## HITS:1 COG:STM3112 KEGG:ns NR:ns ## COG: STM3112 COG0741 # Protein_GI_number: 16766413 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Salmonella typhimurium LT2 # 1 361 1 361 361 683 93.0 0 MMKKFLALAVIAPLLISCSSSTKKGDSYNEAWVKDTNGFDILMGQFAHNIENLWGFKEVL IAGPKDYVKYTDQYQTRSHINFDDGTITVETIAGTDPAGHLRQAIIKTLLMGDDPGSIDL YSDVDDIKISKEPFLYGQVVDNTGQPIRWEGRATNFANYLLQTRLKSRSNGLRIIYSVTI NLVPNHLDKRAHKYIGMVRQASRKYGVDESLILAIMQTESSFNPYAVSHADALGLMQVVQ HSAGKDVFRSQGRSGTPSRSFLFDPASNIDTGTAYLAMLNNVYLGGIDNPTSRRYAVITA YNGGAGSVLRVFSNDKIQAANIINSMSPGDVYQTLTTRHPSAESRRYLYKVNSAQKSYRR R >gi|283548476|gb|GG730301.1| GENE 14 18159 - 18428 396 89 aa, chain - ## HITS:1 COG:STM3111 KEGG:ns NR:ns ## COG: STM3111 COG2924 # Protein_GI_number: 16766412 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: Fe-S cluster protector protein # Organism: Salmonella typhimurium LT2 # 1 88 1 88 91 159 92.0 1e-39 MSRTIFCTFLQREAEGQDFQLYPGDLGKRIYNEISKEAWAQWQHKQTMLINEKKLNMMNV EHRKLLEQEMINFLFEGKDVHIEGYTPES >gi|283548476|gb|GG730301.1| GENE 15 18456 - 19607 1076 383 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 39 376 11 366 378 419 58 1e-115 MQVKEESEQRKVPVYTPLPLCCNLAPGNNETVIMQASQFSAQVLSWYDKYGRKTLPWQID KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLAHAPLDEVLHLWTGLGYYARAR NLHKAAQQVVALHGGTFPQTFDEVAALPGVGRSTAGAILSLSLGQHFPILDGNVKRVLAR CYAVSGWPGKKEVEKKLWELSEQVTPAHGVERFNQAMMDLGAMVCTRSKPKCSLCPLENG CVASANASWALYPGKKPKQTLPERTGYFLLLQHDDEVLLSQRPPSGLWGGLYCFPQFDDE DGLRNWLAQRQINADNLTQLNAFRHTFSHFHLDIVPMWLPVSSFTSCMDEGNALWYNLAQ PPSVGLAAPVERLLQQLRAGTQV >gi|283548476|gb|GG730301.1| GENE 16 19669 - 20388 574 239 aa, chain + ## HITS:1 COG:STM3109 KEGG:ns NR:ns ## COG: STM3109 COG0220 # Protein_GI_number: 16766410 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Salmonella typhimurium LT2 # 1 239 1 239 239 474 96.0 1e-134 MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEEPVDFAALF GRDAPVTLEIGFGMGASLVAMAKACPEQNFLGIEVHSPGVGACLASAHEEGVENLRVMCH DAVEVLHKMIPDNSLSMVQLFFPDPWHKARHNKRRIVQVPFAEHILSKLKLGGVFHMATD WEAYAEHMLEVMSSIDGYKNQSESNDYVPRPQSRPVTKFEQRGHRLGHGVWDLMFERVK >gi|283548476|gb|GG730301.1| GENE 17 20388 - 20714 468 108 aa, chain + ## HITS:1 COG:yggL KEGG:ns NR:ns ## COG: yggL COG3171 # Protein_GI_number: 16130860 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 108 11 118 118 194 92.0 4e-50 MAKNRSRRLRKKMHIDEFQEIGFSVAWRFPEGTSGEQVDKIVDDFINEVIEPNKLAFDGS GYLAWEGLICLQEIGKCTEEHQAIVRKWLEEHKLEEVRTSELFDIWWD >gi|283548476|gb|GG730301.1| GENE 18 20767 - 21483 983 238 aa, chain + ## HITS:1 COG:no KEGG:ROD_50291 NR:ns ## KEGG: ROD_50291 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 238 2 239 239 409 91.0 1e-113 MRKTLLAAVLTFTAMAAHADYQCSVTPRDDVILNPQTVQVKGENGDLVITQAGDVTFNGK QYNLNAAQREQAKDYQAALRSSLPWIDEGARARVEKGRVALDKIIAKEVGESSNMRGRLT KLDAQLKEQMNRIIEHRTDGLTFHYKAIDQVRADGQQLVNQAMGGILQDSINEMGAKAVL KGGGNPLQGVLGSLGGLQTSIQNEWKNQEQDFQQFGKDVCARVVTLENDRKTLVSTLK >gi|283548476|gb|GG730301.1| GENE 19 21672 - 22718 1260 348 aa, chain + ## HITS:1 COG:STM3106 KEGG:ns NR:ns ## COG: STM3106 COG0252 # Protein_GI_number: 16766407 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Salmonella typhimurium LT2 # 1 348 1 348 348 594 95.0 1e-169 MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATKSNYTAGKVGVENLVEA VPQLKDIAVVKGEQVVNIGSQDMNDDVWLTLAKKINTECDKTDGFVVTHGTDTMEETAYF LDLTVKCNKPVVLVGAMRPSTGMSADGPFNLYNAVVTAADKTSANRGVLVVMNDTVMDGR DVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTTSTPFDVSKLTELPKVGIVY NYANASDLPAKALVDAGYAGIVSAGVGNGNLYKTVFDTLATAAHKGTVVVRSSRVPTGST TQDAEVDDAKYGFVASGSLNPQKARVLLQLALTQTKDPKQIQEMFNQY >gi|283548476|gb|GG730301.1| GENE 20 22828 - 23964 979 378 aa, chain - ## HITS:1 COG:yggW KEGG:ns NR:ns ## COG: yggW COG0635 # Protein_GI_number: 16130856 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Escherichia coli K12 # 1 378 1 378 378 740 92.0 0 MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLSDLDSEVAHAQGREVK TIFIGGGTPSLLSGPAMQTLLDGVRARLKLAADAEITMEANPGTVEANRFVDYQRAGVNR ISIGVQSFSSAKLERLGRIHGPEEAKRAAHLASGLGLRSFNLDLMHGLPDQTLDEALGDL QQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSA YAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDGRILRTTKTRHPRGYMQGRYLESQR DVAEADKPFEFFMNRFRLLEAAPRAEFTQYTGLAEDVIRQQIDEAIAQGYLSECDEYWQI TQHGKLFLNSLLELFLAE >gi|283548476|gb|GG730301.1| GENE 21 23957 - 24550 944 197 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|24114209|ref|NP_708719.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella flexneri 2a str. 301] # 1 197 1 197 197 368 91 1e-100 MQKVVLATGNAGKVRELASLLSDFGLDVVAQTDLGVDSAEETGLTFIENAILKARHAAQI TGLPAIADDSGLAVNALGGAPGIYSARYSGEDATDRQNLEKLLHTLQDVPDDKRQAQFHC VLVYMRHADDPTPVVCHGSWPGVIAHEPAGNGGFGYDPIFFVPSEGKTAAELTREEKSAI SHRGQALKLLLDALRNG >gi|283548476|gb|GG730301.1| GENE 22 24558 - 24848 223 96 aa, chain - ## HITS:1 COG:STM3102 KEGG:ns NR:ns ## COG: STM3102 COG1872 # Protein_GI_number: 16766403 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 96 1 96 96 171 93.0 4e-43 MSAVTPCDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFR VAKSQVVIEKGELGRHKQVKIIHPQQIPPEIAALTD >gi|283548476|gb|GG730301.1| GENE 23 24845 - 25411 736 188 aa, chain - ## HITS:1 COG:ECs3828 KEGG:ns NR:ns ## COG: ECs3828 COG0762 # Protein_GI_number: 15833082 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 258 89.0 5e-69 MNTLTFLLSTVIELYTMALLLRVWMQWSRCDFYNPFSQFIVKITQPVIGPLRRVIPPMGP IDSASALVALVLSFIKAIVLFKVVTFQPIIWIAAVLIVLKTIGLLIFWVLLVMAIMSWVS QGRSPVEYVLIQLADPLLRPIRRILPGMGGIDFSPMVLVLLLYVINMGIAEVLQATGNML LPGLWMAL >gi|283548476|gb|GG730301.1| GENE 24 25430 - 26134 666 234 aa, chain - ## HITS:1 COG:ECs3826 KEGG:ns NR:ns ## COG: ECs3826 COG0325 # Protein_GI_number: 15833081 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Escherichia coli O157:H7 # 1 234 1 234 234 403 88.0 1e-112 MNDIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ EGVDKIRYFREQGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAEL PPLNVLIQINISDENSKSGIPLTELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVA QQMAVAFTGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDYTKK >gi|283548476|gb|GG730301.1| GENE 25 26152 - 27132 693 326 aa, chain + ## HITS:1 COG:yggR KEGG:ns NR:ns ## COG: yggR COG2805 # Protein_GI_number: 16130851 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein, pilus retraction ATPase PilT # Organism: Escherichia coli K12 # 1 326 16 341 341 497 79.0 1e-140 MNMEEIVALSVKHNVSDLHLCNAWPARWRIRGNVEIAPFTTPDVETLLMCWLSEQQQVQW REQGQIDFAVTLANSWRLRASAFVHQQGTSLALRLLPFNCPCLDDLQTPAVLPELLHSEN GLILVTGATGSGKSTTLAAMVAYLNQHVAGHILTLEDPIEYRYASQRCLIQQREVGIHCS SFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIVRLVDT FPAQEKDPVRNQLADSLRAVLAQKLEQDKQGGRVALFELLVNTPAVGNLIREGKTHQLPG VMQTGQQTGMQTFMQSQQQRQAQGRL >gi|283548476|gb|GG730301.1| GENE 26 27129 - 27545 415 138 aa, chain - ## HITS:1 COG:ECs3825 KEGG:ns NR:ns ## COG: ECs3825 COG0816 # Protein_GI_number: 15833079 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Escherichia coli O157:H7 # 1 138 1 138 138 271 97.0 4e-73 MSGTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVG LPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVEARSGLFEQGGYRALNKGK VDSASAVIILESYFEQGY >gi|283548476|gb|GG730301.1| GENE 27 27545 - 28108 674 187 aa, chain - ## HITS:1 COG:STM3096 KEGG:ns NR:ns ## COG: STM3096 COG1678 # Protein_GI_number: 16766397 # Func_class: K Transcription # Function: Putative transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 187 1 187 187 353 93.0 8e-98 MNLQHHFLIAMPALQDPIFRRSVVYICEHNENGAMGIIINKPLENLQIEGILEKLKITPE ARDPAIRLDKPVMLGGPLAEDRGFILHTPPSRFASSIRISDNTIITTSRDVLETLGTQEQ PSEVLVALGYSSWEKGQLEQELLDNAWLTAPADLNILFKTPIADRWRDAAKLIGIDILTM PGVAGHA >gi|283548476|gb|GG730301.1| GENE 28 28285 - 29232 353 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212636859|ref|YP_002313384.1| Glutathione synthase; Ribosomal protein S6 modification enzyme [Shewanella piezotolerans WP3] # 7 310 6 319 345 140 32 8e-32 MIKLGIVMDPIASINIKKDSSFAMLLEAQRRGYEIHYMEMADLYLINGEARARTRTLSVE QNYDKWYEFKSGQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLR DCNEKLFTAWFADLTPETLVTRNKAQLKAFWQKHSDIILKPLDGMGGASIFRVKEGDPNL GVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG RGEPRPLTDSDWEIARRIGPTLKAKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVS ITGMLMDAIEARLQK >gi|283548476|gb|GG730301.1| GENE 29 29245 - 29976 688 243 aa, chain - ## HITS:1 COG:ECs3822 KEGG:ns NR:ns ## COG: ECs3822 COG1385 # Protein_GI_number: 15833076 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 243 10 252 252 465 95.0 1e-131 MRIPRIYHPEPLTSGSQISLCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITHASKK SVDVKVLNVELDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASASIN TLPLPVERIRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFG DLG >gi|283548476|gb|GG730301.1| GENE 30 30052 - 30759 653 235 aa, chain - ## HITS:1 COG:endA KEGG:ns NR:ns ## COG: endA COG2356 # Protein_GI_number: 16130846 # Func_class: L Replication, recombination and repair # Function: Endonuclease I # Organism: Escherichia coli K12 # 1 235 1 235 235 414 90.0 1e-116 MYRNLSFAAALLATAFSGPVLAAGINSFSQAKAAGVKVNADAPGDFYCGCKINWQGKKGV VDLESCGYKVRKNENRASRIEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYRQMESDMH NLQPAVGEVNGDRANFMYSQWNGGEGQYGQCAMKVDFKEKVAEPPARARGAIARTYFYMR DRYDLTLSRQQTQLFNAWNKQYPVTDWECERDERIAQVQGNHNPYVQRACQAQKS >gi|283548476|gb|GG730301.1| GENE 31 30853 - 31350 350 165 aa, chain - ## HITS:1 COG:ECs3820 KEGG:ns NR:ns ## COG: ECs3820 COG3091 # Protein_GI_number: 15833074 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 164 1 164 165 278 87.0 4e-75 MKTSRLPIAIQQAVMRSLREKLAQANLKLERAYPEPKLVYQQRGTAAGTAWLQTYEIRLN PVLLMENVEAFVNEVVPHELAHLLVWKHFGRVPPHGKEWKWMMESVLGVPARRTHQFELQ SVQRKTFTYRCKCLEHQLTVRRHNRVVRGEATYRCVHCGEPLVAA >gi|283548476|gb|GG730301.1| GENE 32 31429 - 32823 1928 464 aa, chain - ## HITS:1 COG:STM3091 KEGG:ns NR:ns ## COG: STM3091 COG0477 # Protein_GI_number: 16766392 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 464 1 464 464 823 94.0 0 MPDNKKTGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFITDEFQITAHTQEWVVSS MMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLLVSRVLLGLAVG VASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIP ALLLLVGVIFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWA LFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYANTTEQMWGTVIVGLTN VLATFIAIGLVDRWGRKPTLILGFIVMAVGMGVLGTMMHVGIHSAAAQYFAVLMLLMFIV GFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNSLGSANTFWV YGGLNVLFIFVTLWLIPETKNVSLEHIERNLMKGRKLREIGAHD >gi|283548476|gb|GG730301.1| GENE 33 33209 - 34363 1510 384 aa, chain - ## HITS:1 COG:ECs3818 KEGG:ns NR:ns ## COG: ECs3818 COG0192 # Protein_GI_number: 15833072 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Escherichia coli O157:H7 # 1 384 1 384 384 772 98.0 0 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTS AWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRADPLEQGAGDQ GLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLSWLRPDAKSQVTFQYDDGKIVG IDAVVLSTQHSEDIDQKSLQEAVMEEIIKPVLPTEWLNASTKFFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS YAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGH FGREHFPWEKTDKAQLLRDAAGLK >gi|283548476|gb|GG730301.1| GENE 34 35230 - 37128 2408 632 aa, chain + ## HITS:1 COG:ECs3814 KEGG:ns NR:ns ## COG: ECs3814 COG1166 # Protein_GI_number: 15833068 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Escherichia coli O157:H7 # 1 632 27 658 658 1271 96.0 0 MSSEEASKMLRTYNIAWWGNNYYDVNELGHISVCPDPDVPEARVDLAELVKAREAQGQRL PALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLG LEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIV LDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAANQVLQLVEILRERGRLDSI QLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDC SVNYGLNEYANNIIWAIGDACEEHGLPHPTVITESGRAVTAHHTVLVSNIIGVERSENTE ATPPADDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHVGYSSGTFSLQERA WAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQERMADKIYVNFSLFQSMPDAWGIDQLFP VLPLEGLNQVPERRAVLLDITCDSDGAIDHYVDGDGIATTMPMPEYDPENPPMLGFFMVG AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPNTLLTQFRD QVKNTDLDTELQQQFLEEFEAGLYGYTYLEDE >gi|283548476|gb|GG730301.1| GENE 35 37335 - 38255 1220 306 aa, chain + ## HITS:1 COG:ECs3812 KEGG:ns NR:ns ## COG: ECs3812 COG0010 # Protein_GI_number: 15833066 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Escherichia coli O157:H7 # 1 306 1 306 306 607 98.0 1e-174 MSTLGHQYDNSLVSNAFGFLRLPMNFMPYDSDADWVITGVPFDMATSGRAGGRHGPAAIR QVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLSAGKRML SFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCEFDHGTMFYTAPNEGLIDPNH SVQIGIRTEFDKDNGFTVLDACQVNDRGVDDIIAQVKQIVGDMPVYLTFDIDCLDPAFAP GTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVAPAYDQSEITALAAATLALEMLYIQ AAKKGE >gi|283548476|gb|GG730301.1| GENE 36 38352 - 39110 943 252 aa, chain - ## HITS:1 COG:ECs3811 KEGG:ns NR:ns ## COG: ECs3811 COG0501 # Protein_GI_number: 15833065 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Escherichia coli O157:H7 # 1 252 43 294 294 429 92.0 1e-120 MKIRALLLATSMAAALTGCQNMDSNGLLSSGAEAFQAYSLSDAQVKALSDQACKDMDSKA TIAPAGSEYAARLGKIASALGDNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDMMT DNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRAAAASAGGIVGSLSQSQLGDLGEKLV NSQFSQRQESEADDYSYDLLRKRGINPSGLATSFEKLAKLEAGRQSSMFDDHPASAERAQ HIRDRMSADGIK >gi|283548476|gb|GG730301.1| GENE 37 39390 - 41381 2378 663 aa, chain + ## HITS:1 COG:STM3076 KEGG:ns NR:ns ## COG: STM3076 COG0021 # Protein_GI_number: 16766377 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Salmonella typhimurium LT2 # 1 663 1 663 663 1307 96.0 0 MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRF VLSNGHGSMLIYSLLHLTGYDLPMSELQNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGI ANAVGMAIAEKTLAAQFNRPGHDIVDHFTYAFMGDGCMMEGISHEVCSLAGTLKLGKLVA FYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVVRGVDGHDADAIKRAVEEARAVTDKPSL LMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAG QAKEAAWNEKFAAYAKAFPQEAAEFTRRMKGDMPADFDAKANEFIAKLQANPSKIASRKA SQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDTAGNYIHYGVREFGMTAIANG ISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA SLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTPEQLANIARGG YVLKDCAGQPELIFIATGSEVELAVAAWDKLTAEGVKARVVSMPSTDAFDKQDAAYRESV LPKAVSARVAVEAGIADYWFKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVENVVAKAK ELL >gi|283548476|gb|GG730301.1| GENE 38 41443 - 42093 176 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 214 1 217 245 72 25 3e-11 MLTLNQVTYRWPNAADDCLRNITLELRDGEWLALTGDNGAGKSTLLRIMAGLLSPSSGTI TVQNRGIAQLKNRERAGMIGVLFQEAENQIFHSKVREEVAFGLRLQRLPAVEVAHRTAAA LQLCQLEDVADAHPLDLHTAQRRMVAVASLEALTPAILLLDEPSRDFDAHWLGIFENWLA VCRARGTSVVAISHDAAFTQRHFSRVVRLEEGRLRT >gi|283548476|gb|GG730301.1| GENE 39 42087 - 42764 305 225 aa, chain - ## HITS:1 COG:STM3074 KEGG:ns NR:ns ## COG: STM3074 COG1122 # Protein_GI_number: 16766375 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 372 81.0 1e-103 MVTLEQFRYHPTHAMRPSACFNFHYAKPGMVAIFGDNGSGKSTLAQLMAGWYPDFLPGDI EGTGTLLGNPIGQLSLVEQSSTIQLVQQSPYLQLSGCTFSVEEEVAFGPENLCLTGEEII RRIDAALTLTECQPLRYRHPGALSGGETQRVVIASALAMQPKILILDEAFSRLTAQATTM LLERLQQWAQEQHALVVLFERNHSPFLSHCQQAWQLRDGALSPLC >gi|283548476|gb|GG730301.1| GENE 40 42752 - 43342 495 196 aa, chain - ## HITS:1 COG:ECs3801 KEGG:ns NR:ns ## COG: ECs3801 COG0619 # Protein_GI_number: 15833055 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Escherichia coli O157:H7 # 1 196 40 235 235 293 83.0 1e-79 MKATRPRARYVLWLMIPLGLGLWLVHGGWLTEWISGQPRAPERWAAAVTLWLRILAIVST SQMWMQYVPVSRFMRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDE GWWQRLRAMPALIVPLTHNALNDLAVRGAALDMRGFRLHRTRTTLWAPPDSTLQRLARYG MVVLMVIETGVWIWLR >gi|283548476|gb|GG730301.1| GENE 41 43460 - 44038 616 192 aa, chain - ## HITS:1 COG:no KEGG:CKO_04299 NR:ns ## KEGG: CKO_04299 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 192 1 192 192 271 93.0 1e-71 MARRQFSSQSLVLIVIAIAINMVGGQLISMLKLPIFLDSIGTLISAVLLGPVVGMLTGLL TNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKVVVSGVIITLAVTLVAVPI RTTLFGGVTGSGADLFVAWMHSAGQNLVESVAVTVIGANLVDKILTAIIVWVLLRQLPLR TTRHFPTMSAVR >gi|283548476|gb|GG730301.1| GENE 42 44062 - 44487 319 141 aa, chain - ## HITS:1 COG:STM3071 KEGG:ns NR:ns ## COG: STM3071 COG1661 # Protein_GI_number: 16766372 # Func_class: R General function prediction only # Function: Predicted DNA-binding protein with PD1-like DNA-binding motif # Organism: Salmonella typhimurium LT2 # 8 141 8 141 141 219 83.0 1e-57 MATFDPQSTDARFYALRLLPGQEVFSALRDFVQQHQLQAAWIAGCTGSLTNVALRYAGRD ETTLLTGTWEIISLNGTLELTGEHLHLAVADPHGAMLGGHMMPGCTVRTTLELVIGELAS LAFSRQPCAISGYDELVISSR >gi|283548476|gb|GG730301.1| GENE 43 44863 - 45891 876 342 aa, chain + ## HITS:1 COG:ECs3798 KEGG:ns NR:ns ## COG: ECs3798 COG0057 # Protein_GI_number: 15833052 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 339 1 339 339 651 95.0 0 MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWD VRQERDQLIVGDDAIRILHERTLDALPWRELGVDVVLDCTGVFGNREHGEAHIAAGAKKV LFSHPGSHDIDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTT IHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTI NVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGT QTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAAIGFRLDA >gi|283548476|gb|GG730301.1| GENE 44 45931 - 47094 1412 387 aa, chain + ## HITS:1 COG:STM3069 KEGG:ns NR:ns ## COG: STM3069 COG0126 # Protein_GI_number: 16766370 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Salmonella typhimurium LT2 # 1 387 1 387 387 706 98.0 0 MSVIKMTDLDLAGKRVFIRADLNVPVKEGKVTSDARIRASLPTIELALKQGAKVMVTSHL GRPTEGEYNEEFSLLPVVNYLKDKLSAPVRLVKDYLDGVEVAAGELVVLENVRFNKGEKK DDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGKALKE PARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFVAAQGHNVGKSLYEADLVD EAKRLLTTCDIPVPTDVRVATEFSETAPATLKSVSDVKEDEQILDIGDASAQQLAEILKN AKTILWNGPVGVFEFPNFRKGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADKISYIS TGGGAFLEFVEGKVLPAVAMLEERAKK >gi|283548476|gb|GG730301.1| GENE 45 47183 - 48262 1184 359 aa, chain + ## HITS:1 COG:Zfba KEGG:ns NR:ns ## COG: Zfba COG0191 # Protein_GI_number: 15803459 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 EDL933 # 1 359 26 384 384 726 97.0 0 MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ FSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWI DGLLDAGEKHFAATGKPLFSSHMIDLSEESLHENIEICSKYLARMSKMGMTLEIELGCTG GEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPT ILRDSQDYVSKKHNLPHNSLNFVFHGGSGSSAQEIKDSVSYGVVKMNIDTDTQWATWEGV LNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQASMITRLEQAFKELNAVDVL >gi|283548476|gb|GG730301.1| GENE 46 48455 - 49315 1113 286 aa, chain + ## HITS:1 COG:ECs3795 KEGG:ns NR:ns ## COG: ECs3795 COG0668 # Protein_GI_number: 15833049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 282 1 282 286 467 92.0 1e-131 MEDLNVVDSINGAGTWLVRNQELLLSYAVNIVAAIAIVIIGMIVARIVSNTVNRLMVSRK IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAA GVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRTVDGKIVVIPNGKIIAGNIINFSR EPVRRNEFIIGVAYDSDIDQVKKILTDIIQSDERILKDREMTVRLNELGASSINFVVRVW SNSSDLQSVYWDVLERIKREFDANGISFPYPQMDVNFKRVKEGATE >gi|283548476|gb|GG730301.1| GENE 47 49511 - 50146 731 211 aa, chain + ## HITS:1 COG:ECs3794 KEGG:ns NR:ns ## COG: ECs3794 COG1279 # Protein_GI_number: 15833048 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Escherichia coli O157:H7 # 1 211 1 211 211 342 90.0 2e-94 MISYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSA LLMQSPWLMALVTWGGVAFLLWYGFGALKTAMSSNLELASAEVMKQGRWKIIATMLAVTW LNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTVSASFLWFFGLALLAAWLAPRLRTAKAQ RIINTLVGLVMWFIAFQLAKEGVAHVHALFN >gi|283548476|gb|GG730301.1| GENE 48 50255 - 50986 763 243 aa, chain + ## HITS:1 COG:STM3065 KEGG:ns NR:ns ## COG: STM3065 COG2968 # Protein_GI_number: 16766366 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 243 6 248 248 355 89.0 4e-98 MALAALVGFSALSVQANELPNGPHIVTSGTASVDATPDIATLAIEVNVAAKDAASAKKQA DERVAQYLSFLEQNQIAKKDISAANLRTQPDYDYQNGKSILKGYRAVRTVEVTLRQLDKL NALLDGALKAGLNEIRSVSLGVAQPDAYKDKARKAAIDDAIHQAEQLAAGFNSKLGPVYS VRYHVSNYQPSPMVRMMKADAAPATSAQETYEQPVIQFDDQVDVVFQIEPTAGQPAATPA KTQ >gi|283548476|gb|GG730301.1| GENE 49 51110 - 52006 871 298 aa, chain + ## HITS:1 COG:ygfI KEGG:ns NR:ns ## COG: ygfI COG0583 # Protein_GI_number: 16130822 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 297 6 302 303 553 92.0 1e-157 MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEDQIGYTLFTRKDNNISL NKAGQELYQKLFPVYQRLSAIDNEIHNASRRSREIVIGIDNTYPTIIFDQLISLGDKYHG VTAQAVEFSENGVIDNLFDRKLDFIISPQHVSPRVQELENLAISELSPLRLGFLVSRRYE EKQPQELLRELPWLQMRFQNRANFEAMLDAYMRPCGINPTIIYRPYSFMAKISAVERGQF LTVIPHFAWRLVNPSTLKYFDAPGSPMYMQEFLYSLKNHRYTATMLQHIAEDREGTAD >gi|283548476|gb|GG730301.1| GENE 50 52003 - 53469 1035 488 aa, chain - ## HITS:1 COG:ECs3790 KEGG:ns NR:ns ## COG: ECs3790 COG0427 # Protein_GI_number: 15833044 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Escherichia coli O157:H7 # 3 488 7 492 492 874 88.0 0 MKRMSAEEAAEIIQHDDMVAFSGFTPAGSPKALPIALAQRACEQHQAGQPFQIRLLTGAS IGAAADDALSAADAVSWRAPYQTSSGLREKINQGQVRFVDLHLSEVAQMVNYGFFGDIDV AVIEASAIAPDGRIWLSSGIGNAPTWLLRAKKVIIELNHYHNPRVAEFADIVIPGAPPRR NSVPIFHTMDRVGSRCVQIDPKKIIAVVDTEQPDAGNASDKSNPVSQQIADNVVAFLLAE MAHKRIPAEFLPLQSGVGNINNAVMARLGENPDIPPFMMYSEVLQESVVHLLETGKITGA SASSLTISAPSLQKIYDNMDFFTSRIVLRPQEISNNPEIIRRLGVIALNVGLEFDIYGHA NSTHVAGVNLMNGIGGSGDFERNAYLSIFMAPSIAKGGKISTIVPMCSHVDHSEHSVKVI VTEQGIADLRGLSPMQRAHTIIDNCAHPLYRDYLHRYLEKAPGGHIHHDLSHAFDLHRNL IETGSMLG >gi|283548476|gb|GG730301.1| GENE 51 53494 - 54279 1066 261 aa, chain - ## HITS:1 COG:ECs3789 KEGG:ns NR:ns ## COG: ECs3789 COG1024 # Protein_GI_number: 15833043 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Escherichia coli O157:H7 # 1 261 15 275 275 505 95.0 1e-143 MSYQYVNVVIIQKVAVIEFNYARKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGAK VFSAGHDIHELPSGRRDPLSYDDPLRQITRMIQKYPKPVISMVEGSVWGGAFEMIMSSDL IIAAETSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRAMAVGILNH VVPVDELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS EDYQEGMNAFMEKRKPNFVGH >gi|283548476|gb|GG730301.1| GENE 52 54290 - 55285 870 331 aa, chain - ## HITS:1 COG:argK KEGG:ns NR:ns ## COG: argK COG1703 # Protein_GI_number: 16130819 # Func_class: E Amino acid transport and metabolism # Function: Putative periplasmic protein kinase ArgK and related GTPases of G3E family # Organism: Escherichia coli K12 # 1 331 1 331 331 559 83.0 1e-159 MINAATLDDTVRRLRRGERATLAQAMTLVESSHPRHQPLSTQLLDAIMPFTGNALRLGIT GTPGAGKSTFLEAFGMLLIRRGLRVAAIVVDPSSPVSGGSILGDKTRMTELARAESAFIR PVPSSGHLGGASQRARELMLLCEAAGFDVVIVETVGVGQSETEVAGMVDCFISLQIAGGG DDLQGIKKGLMEMADLVVINKDDGDNRNQVAIARHMYESALHILRRKYDEWQPQVLACSA LEKRGIEEIWQAITDFKTCLTASGRLEKVRQQQAVDWLHKQAEEEALHLLFTRTDFDRYF QQTLQAVKNNDLSPRTGLRHISEFIQHHYFE >gi|283548476|gb|GG730301.1| GENE 53 55278 - 57422 2269 714 aa, chain - ## HITS:1 COG:sbm_1 KEGG:ns NR:ns ## COG: sbm_1 COG1884 # Protein_GI_number: 16130818 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, N-terminal domain/subunit # Organism: Escherichia coli K12 # 1 585 1 585 585 1081 94.0 0 MANVQEWQTLANKELSRREKTVESLERQTAEGIAIKPLYTEADLDNLEVTGTLPGLPPYV RGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDNPR VAGDVGKAGVAIDTVEDMKILFDQIPLDKMSVSMTMNGAVLPVLAFYIVAAEEQGVTPEQ LTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCSANMPRYNTISISGYHMGEAGAN CVQQVAFTLADGIEYIKAALSAGLKIDDFAPRLSFFFGIGMDLFMNVAMLRAARYLWSEA VSGFGATNPKSLALRTHCQTSGWSLTEQDPYNNVIRTTIEALGATLGGTQSLHTNAFDEA LGLPTDFSARIARNTQIIIQEESEICRTVDPLAGSYYVESLTDQIVKQARTIIKQIDEAG GMAKAIEAGLPKRMIEEASAREQSLIDQGKRVIVGVNKYKLDKEDETSVLEIDNVKVRNE QIASLRHIRATRDNDAVKAALSALTHAAQHSENLLAAAVNAARVRATLGEISDALEVAFD RYLVPSQCVTGVIAQSYHQSDKSADEFDAIVAQTEQFLAENGRRPRILIAKMGQDGHDRG AKVIASAYSDLGFDVDLSPMFSTPEEIARLAVENDVHVIGASSLAAGHKTLIPELVTALK GWGREDICVVAGGVIPPQDYAFLYEHGVAAIYGPGTPMLDSVRDVLTRISQHHD >gi|283548476|gb|GG730301.1| GENE 54 57652 - 58545 970 297 aa, chain - ## HITS:1 COG:ECs3786 KEGG:ns NR:ns ## COG: ECs3786 COG0583 # Protein_GI_number: 15833040 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 297 1 297 297 561 96.0 1e-160 MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPT EQGQKLLALLRQVELLEDEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLANSPIR LNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVGSKAFAERYFPNG VTRSALLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMI PHLQIEKELESGELIDLTPGLFQRRMLYWHRFAPESRMMRNVTDALLAYGHNVLRQD >gi|283548476|gb|GG730301.1| GENE 55 58716 - 59375 863 219 aa, chain + ## HITS:1 COG:ECs3785 KEGG:ns NR:ns ## COG: ECs3785 COG0120 # Protein_GI_number: 15833039 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 388 97.0 1e-108 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKL KSLGIHVFDLNEVDSLGVYVDGADEINGHMQMIKGGGAALTREKIIASVAKKFICIADAS KEVDILGNFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGLEILDAI AMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK >gi|283548476|gb|GG730301.1| GENE 56 59646 - 60878 1634 410 aa, chain + ## HITS:1 COG:ECs3784 KEGG:ns NR:ns ## COG: ECs3784 COG0111 # Protein_GI_number: 15833038 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Escherichia coli O157:H7 # 1 410 1 410 410 769 95.0 0 MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDTEQLKESIRDAHFIGLR SRTHLTEDVIAAAEKLVAIGCFCIGTNQVDLSAAAKRGIPVFNAPFSNTRSVAELVIGEL LLLLRGVPEANAKAHRGVWNKLATGSFEARGKKLGIIGYGHIGTQLGILAESLGMHVYFY DIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENASTKNLMGAREISLMKPGALLINAAR GTVVDIPALCDALATKHLAGAAIDVFPTEPATNSDPFTSPLCDFDNVILTPHIGGSTLEA QENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNQIFAE QGVNIAAQYLQTSAQVGYVVIDIEADEDVAEKALLAMKALPGTIRARLLY >gi|283548476|gb|GG730301.1| GENE 57 61259 - 61855 461 198 aa, chain - ## HITS:1 COG:STM3061 KEGG:ns NR:ns ## COG: STM3061 COG0212 # Protein_GI_number: 16766362 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Salmonella typhimurium LT2 # 17 198 1 182 182 328 91.0 3e-90 MTLLSELPLSRQEIRKLIRQRRRALTSAQQQHYGQQAATRMLSFPPVVLAHTVAVFLSFD GELDTQPLIEQLWRAGKRVHLPVLHPFSPGNLLFLHYHPQSALVTNRLKIQEPRLDVRDV LPLSQLDVLVTPLVAFDEDGQRLGMGGGFYDRTLQNWQQHKIQPVGYAHDCQLVEKLPVE EWDIPLPAVVTPSRIWEW >gi|283548476|gb|GG730301.1| GENE 58 61887 - 62237 96 116 aa, chain + ## HITS:1 COG:no KEGG:EFER_2848 NR:ns ## KEGG: EFER_2848 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 87 39 125 125 160 89.0 2e-38 MPPQAVTLEPLVQGECVVTVLRLLGQAEHAHQPWSATFLWYEISAQGTGPLANISEKFCL HGHSTTVNRKVLFKVLARFFGYATLIKQRLFDGLLQHPNTLFHARRVVTRLRFFLS >gi|283548476|gb|GG730301.1| GENE 59 62100 - 62429 286 109 aa, chain - ## HITS:1 COG:STM3060 KEGG:ns NR:ns ## COG: STM3060 COG3027 # Protein_GI_number: 16766361 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 109 1 109 109 169 99.0 8e-43 MSAQPVDIQIFGRSLRVNCPPEQRDALNQAADDLNQRLQDLKVRTRVTNTEQLVFIAALN ISYELTQEKAKTRDYAASMEQRIRMLQQTIEQALLDQGRITEKTGQNFE >gi|283548476|gb|GG730301.1| GENE 60 62597 - 63175 693 192 aa, chain + ## HITS:1 COG:STM3059 KEGG:ns NR:ns ## COG: STM3059 COG3079 # Protein_GI_number: 16766360 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 192 3 194 194 366 95.0 1e-101 MSIQNEMPGYNDVSQFLNQQGAGLTPAEMHGLISGMICGGNNDSSWQPLLHDLTNEGLAF GHELAQALLKMHSATSDALEDDGFLFQLFLPEGDDVSVFDRADALAGWVNHFLLGLGVTQ PKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTRQQ PTAPEVRKPTLH >gi|283548476|gb|GG730301.1| GENE 61 63200 - 64525 1378 441 aa, chain + ## HITS:1 COG:STM3058 KEGG:ns NR:ns ## COG: STM3058 COG0006 # Protein_GI_number: 16766359 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Salmonella typhimurium LT2 # 4 441 1 438 438 832 92.0 0 MTEISQQEFQRRRQALLAQMQSGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPE AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPAKLGVDRALAFSEINQQLHL LLNGLDAVYHAQGEYAWADEIVCAALDKLRKGSRQNLRAPAAIIDWRPMVHEMRLFKSPE EIALMRRAGEITALAHTRAMEKCRPGMFEYQLEGEIHHEFTRHGARYPSYNTIVGSGENG CILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGRFTPAQREIYDIVLESLET SLRLYRPGTSIQEVTGEVVRIMITGLVKLGILHGDVDQLITENAHRPFFMHGLSHWLGLD VHDVGVYGQDRSRVLEPGMVLTVEPGLYIAPDADVPPAYRGIGIRIEDDILITEDGNENL TASVVKKADDIEALMAAARQQ >gi|283548476|gb|GG730301.1| GENE 62 64522 - 65700 1023 392 aa, chain + ## HITS:1 COG:ubiH KEGG:ns NR:ns ## COG: ubiH COG0654 # Protein_GI_number: 16130809 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli K12 # 1 392 1 392 392 659 84.0 0 MSVIIVGGGMVGATLALAISQLSHGTLPVHLIEASAPETDRHPGFDARAIALAAGTCQQL ARIGVWQAIADCATAIKTVHVSDRGHAGFVTLDAQEYRLPALGQVVELHDVGLRLFALLR KAPGVTLHCPERVASVSRTQERVEVTLENGEVITGRVLVAADGTRSALATACGVDWQQQP YEQLAVIANVTTSVTHAGRAFERFTQHGPLAMLPMSDGRCSLVWCHQLERRDEIMAWSDE RFCRELQTAFGWRLGRITHAGKRNAYPLSLTSAQKAITHRTVLVGNAAQTLHPIAGQGFN LGLRDVMSLAETLTQAQNRAEDIGDYVVLARYQQRRERDRETTIGVTNNLVYLFANRWAP LVVGRNVGLMAMELFPPARDALAERTLGWVAR >gi|283548476|gb|GG730301.1| GENE 63 65816 - 67018 1416 400 aa, chain + ## HITS:1 COG:ECs3777 KEGG:ns NR:ns ## COG: ECs3777 COG0654 # Protein_GI_number: 15833031 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Escherichia coli O157:H7 # 1 400 1 400 400 742 91.0 0 MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQHAPQPLAADAPPQLRVSAINAASEKL LTRLGVWSDIVARRACCYHGMEVWDKDSFGRIEFDDQSMGYSHLGHIVENAEIHYALWQK AQRSADITLMAPAELQQVAWGENEAFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTF WDYRHHALVATIRTQEAHGAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPQEAERMQQA SVDEFNQALNIAFDNRLGLCSVESERQTFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQ GVNLGFMDAAELIDELKRLQRQGKDIGQYLYLRRYERSRKHSAAMMLAGMQGFRELFAGE NPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR >gi|283548476|gb|GG730301.1| GENE 64 67471 - 68565 1152 364 aa, chain + ## HITS:1 COG:STM3055 KEGG:ns NR:ns ## COG: STM3055 COG0404 # Protein_GI_number: 16766356 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Salmonella typhimurium LT2 # 1 364 1 364 364 725 97.0 0 MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHAVRTDAGMFDVSHMTIVDLRGS RTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREK DLSWITQHAEPYAIDITVRDDLSLIAVQGPNAQAKAATLFTDEQRHATEGMKPFFGVQAG DLFIATTGYTGEAGYEIAMPNEKAAAFWRALVQAGVKPCGLGARDTLRLEAGMNLYGQEM DEGISPLEANMGWTIAWEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVRF TDTSGNQHEGIITSGTFSPTLGYSIALARVPAGIGETAIVQIRNREMPVKVTKPVFVRNG KAVA >gi|283548476|gb|GG730301.1| GENE 65 68590 - 68979 563 129 aa, chain + ## HITS:1 COG:ECs3775 KEGG:ns NR:ns ## COG: ECs3775 COG0509 # Protein_GI_number: 15833029 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Escherichia coli O157:H7 # 1 129 1 129 129 214 98.0 2e-56 MSNVPAELKYSKEHEWLRKEADGSYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV AESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESEIESLLDAT AYEALLEDE >gi|283548476|gb|GG730301.1| GENE 66 69098 - 71971 3542 957 aa, chain + ## HITS:1 COG:ECs3774_2 KEGG:ns NR:ns ## COG: ECs3774_2 COG1003 # Protein_GI_number: 15833028 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Escherichia coli O157:H7 # 451 957 1 507 507 972 93.0 0 MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAESLNALIGQIVPKDIQLATPPQVGE AATEYAALAELKAIAGRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVS QGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVH PQTLDVVRTRAETFGFDVIVDDAAKALDHQDVFGVLLQQVGTTGEVHDYSALIAELKSRK VVVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGR IIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVYHGPVGLKRI ANRIHRLTDILAAGLQQKGLKLRHAHYFDTLCVEVADKAAVLARAEAAEINLRSDIHNAV GITLDETTTRENVVQLFNVLLGDSHGLSIDTLDKDVALDSRSIQESMLRDDAILSHPVFN RYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPE QAEGYQQMIGQLSEWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNDGHRDICLI PASAHGTNPASAQMAGMQVVVVACDKNGNIDLGDLREKAAQAGENLSCIMVTYPSTHGVY EETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPG MGPIGVKSHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQ ASQVAILNANYIASRLKDVYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDY GFHAPTMSFPVAGTLMVEPTESESKVELDRFINAMLAIRAEIDRVKAGEWSLEDNPLVNS PHTQNELVSEWNHGYSREVAVFPAGVANKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ >gi|283548476|gb|GG730301.1| GENE 67 72127 - 73233 872 368 aa, chain - ## HITS:1 COG:STM3529 KEGG:ns NR:ns ## COG: STM3529 COG0371 # Protein_GI_number: 16766816 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 365 1 365 369 521 70.0 1e-148 MITTAIFPARYVQGAGAIEHSLADEILRLGSNALILQDPIVNQKMGDQINNALAGKLHYH VEIFNSECSDEEISRVSQLAENCEAEIIVGIGGGKTLDTAKATGAALKRPIVIVPTLAST DAPCSSLVVIYTPEGQFKRYLMIPRNPDVVLVDTAVIAQAPVRFLLSGIGDALATWFEAE DCRIKLAGNMTGRQGPMTAFSLARLCFDTLLKYGIQAKNACEQQKVTPALEHVIEANTLL SGLGFESGGLAAAHAIHNGLTVLPQTHRYWHGEKVAFGTLAMLMLTDRDPELITTVYHFC LDLGLPTTLEDIGLPDVSDEMLFKAAEAACLPGETMHNEPYEVTPTNVLAAMRAADAQGR HLKALRQS >gi|283548476|gb|GG730301.1| GENE 68 73554 - 74465 671 303 aa, chain + ## HITS:1 COG:STM3532 KEGG:ns NR:ns ## COG: STM3532 COG0329 # Protein_GI_number: 16766818 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Salmonella typhimurium LT2 # 3 298 4 299 301 375 57.0 1e-104 MNLDKFKGVFPPVPTIVTHEGQLDRAGMGAMLDKVINDGAHGILVLGSGGEFCHMTHQMR LDVTEFALNYVNGRVPVMIGIAAPGTRETIEYGLHAQQHGADAVLVVNPYYALLNADYIY QHYRTVAESLNTPVMLYNFPALTGQDIGLDVIERLARDVPNIVGIKDTIDNISHTREVIN RVHAFRCDFIVFSGYDEYMLDTLILGGNGGIPATFNIAPEITGGIYKAFMEKDYEEAFKK QRVLAKLSSLYAIESPFFGVIKECIKATGMNISTEVIAPTLKLSAEKIEQARSILRAADV IAN >gi|283548476|gb|GG730301.1| GENE 69 74552 - 76072 1137 506 aa, chain + ## HITS:1 COG:AGl2029 KEGG:ns NR:ns ## COG: AGl2029 COG2721 # Protein_GI_number: 15891133 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 506 5 503 503 551 54.0 1e-156 MNTAYPVIKINSNDDVVVARFPVKEGTWLAHEETTVNVDIPAGHKIALRDIAVGEAVKRY GQVIGFASHDIKQGDHVHTHNLSMGDFTRDYAFGEDTVVLPPAEKIDTFMGIRRRDGRVA TRNFIGILTSVNCSATVARAIEDHYKKVGLEQYPQVDGVVALPQSFGCAFGFNSETMAVM RRTLSGYARHVNFAGVVIIGLGCESNQIKDLIQTEGLEEGKFLHSLTIQETGGTQKTIDK GIAIIDAMLPEANNITREPVPVSEVILALECGGSDSYSGISANPVLGYVADKIVQQGGTA ILSETSEIFGAEHLLTRRAITPEVGKKLIARIKWWEDYCARTKSEMNNNPSAGNKAGGLT TVLEKSLGGIAKGGTSNLVEVYEYAEPVTAKGLVFMDTPGYDPMAVTGQIAGGANLLCFT TGRGSAFGSKPTPSLKIATNNALWQRQQEDMDLNCGDVAEGIETIAQAGERLYAQVLAMA SGQKTKSEKFGYGSLEFVPWTMNAIM >gi|283548476|gb|GG730301.1| GENE 70 76198 - 77208 402 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 6 334 8 331 346 159 30 2e-37 MKNKPVLGIFLGEAAGIGPELVAKVIADGTAYQYCKPIIIGDARVLALGQKIAGVSFPWE TITDPSQAKWDNGTVQLIDLKNYDPADLVMGTIDTVSGHATGESLITCMELLKSGKIDGF VFAPLNKEAFKKGGWHIEDEHYLFAEQLGCLDRPRGLLNVLDDLWVFRVTGHVPFRDIVK YITPENVGRSVQLCYDTLRMAGYDNPRIAVAALNPHAGDGGTCGTEEIDVLIPVIEEYRA KGMDIYGPVPGDTLFIHAFNHEYDAVVTLFHDQGQIATKLHSFDVGVTVAGGLPYAITTP EHGTAFDIAGKGIAKTLATERAISVAANMALTNKTK >gi|283548476|gb|GG730301.1| GENE 71 77521 - 78912 1097 463 aa, chain + ## HITS:1 COG:PA2322 KEGG:ns NR:ns ## COG: PA2322 COG2610 # Protein_GI_number: 15597518 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Pseudomonas aeruginosa # 16 457 8 446 450 251 39.0 2e-66 MPIIASVFSIPIHSTSYVVTSGVVAIGLLIILITKLKLHPFFALLISSIFLGVVNGIGVA KTVKTFTHGFGGQLGVTGVVIGLGAMLGGLLVQSGGGDKIADIIIGNRKMVWMPLSVGLV SLIIGLPNLFEVTFVLMVPLVFSITKRLKLPVLAVAIPMSAGLMTAHALLPPGPATIIAA TAYNANIGETTLYGVIISIPVLLVGAYLFPRLMHRHLAVGTPLDLTGPVHSSDESNGEKT QPSLGSALATVLIAPALMIVGTIGLNFVSQPGLLQDGLQAISNPIITLSLALIYAMIFLG RGCGFQTEDILAICKKSIVPIVGLLLIIGGGGGLKDMLTAIGLSDIVSHLATEWSIPPLL FAWLIAVVFRIALGSGTVAVSASGGIVAALLAANPHTNVALLVLSTTTGAMFFSHVSDGA FWLFKEYFGLTVPQTLRTWSLLVTVQSIVGLACVLILGAFIGA >gi|283548476|gb|GG730301.1| GENE 72 79073 - 79828 451 251 aa, chain + ## HITS:1 COG:STM3533 KEGG:ns NR:ns ## COG: STM3533 COG1414 # Protein_GI_number: 16766819 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 6 250 5 250 251 286 58.0 2e-77 MLTNSTTSVPALDKTIKICNYLFTSPGATFSQIQQDLALPKSSTSSLLNALTVHRILRQE KGRFYLGLKLYEWGNKSLEQFDIRNIALPILERVRDQTGLTCHLGVLEELSPIYILKLES HHPISIRTWEGKKLPLHSSGIGKALCAWLPQETIDALLPDENLPRYTDSTITKKNDLMAE FAKIRSKGWAYDNEEDCPGVFCIAAPVFDHKKNVIAAISVSGVQLQLPEDKIAETSVLIM NACRDLSAKMM >gi|283548476|gb|GG730301.1| GENE 73 79894 - 81327 1618 477 aa, chain - ## HITS:1 COG:bglA KEGG:ns NR:ns ## COG: bglA COG2723 # Protein_GI_number: 16130803 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Escherichia coli K12 # 1 477 3 479 479 967 94.0 0 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQHVVPGKYYP NHDAVNFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDETQPNEEGLKFYDDMFDELL KHNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEIN NQRNWRAPLFGYCCSGVVYTEHENPEQTMYQVLHHQFVASALAVKAARHINPAMKVGCML AMVPLYPFSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERREFNIRMEDGDEQ ILREGTCDYLGFSYYMTNAVKAEGGSGDAISGFEDSVPNPHVKASDWGWQIDPVGLRYAL CELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMMKAVTYDGVDLMGY TPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKAVIASNGEKL >gi|283548476|gb|GG730301.1| GENE 74 81448 - 82176 521 242 aa, chain - ## HITS:1 COG:YPO1253 KEGG:ns NR:ns ## COG: YPO1253 COG1737 # Protein_GI_number: 16121540 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 1 239 1 239 246 328 63.0 7e-90 MFSHAAIASLNNLEMLVYNYVIKNRDKVMYMTIRELAEAVGVSTTTVLHFCRKLKCEGYS EFRLRFKLYLEQNEPQQANFGASEIISFFKGVNNDEFDKLLDRAVDIILSSERIIFVGAG TSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFS LHHCKVLSITSHEHSRLAKMADFNLSWHVPQTRIAGVYDITTQIPVIYILESLGRKLAKR IA >gi|283548476|gb|GG730301.1| GENE 75 82229 - 82540 415 103 aa, chain + ## HITS:1 COG:STM3050 KEGG:ns NR:ns ## COG: STM3050 COG3097 # Protein_GI_number: 16766351 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 103 1 103 103 180 89.0 5e-46 MQPNDITFFQRFQDDILAGRKTITIRDESESHFKAGDVLRVGRFEDEGYFCTIEVVGTST VTLDTLTEQHARQENMTLEQLKNVIAEIYPNQTQFYVIDFKCL >gi|283548476|gb|GG730301.1| GENE 76 82704 - 83366 810 220 aa, chain + ## HITS:1 COG:ECs3771 KEGG:ns NR:ns ## COG: ECs3771 COG1272 # Protein_GI_number: 15833025 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Escherichia coli O157:H7 # 1 218 1 218 219 342 94.0 3e-94 MVQKPLIAQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDTNASAMAITSYSLYGGS MILLFLASTLYHAIPHQRAKVWLKKFDHCAIYLLIAGTYTPFLLVGLDSPLARGLMIVIW SLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAAGGVTLLAVGGVVYSL GVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQHA >gi|283548476|gb|GG730301.1| GENE 77 83498 - 84481 1047 327 aa, chain - ## HITS:1 COG:STM3048 KEGG:ns NR:ns ## COG: STM3048 COG0354 # Protein_GI_number: 16766349 # Func_class: R General function prediction only # Function: Predicted aminomethyltransferase related to GcvT # Organism: Salmonella typhimurium LT2 # 1 326 1 326 326 563 85.0 1e-160 MAFTSFPPRQPFASTRLPLTLMTLDDWALATITGADSEKYIQGQVTADVSQMTEHQHVLA AHCDAKGKMWSNLRLFRNSDGFAWLERRNLRDAQLTELKKYAVFSKVVIAPDDERVLLGV AGFQARAALANLFSELPNSDKQVISEGACTILWFEHPAERFLLIVDVATAESLVEKLRGE AELNNSQQWLALDIEAGIPVIDTANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF RGANKRAMWTLAGTASRVPEAGEDLELKMGENWRRTGTVLAAVQLADGQVLVQVVMNNDM EADSVFRVRDDAKTLHIVPLPYSLDEE >gi|283548476|gb|GG730301.1| GENE 78 84521 - 84748 64 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086196|ref|ZP_06571392.1| ## NR: gi|291086196|ref|ZP_06571392.1| putative molybdenum cofactor biosynthesis protein [Citrobacter youngae ATCC 29220] putative molybdenum cofactor biosynthesis protein [Citrobacter youngae ATCC 29220] # 1 75 1 75 75 154 100.0 2e-36 MVKELWPIASGLNRLFVPYSKLCEEASKNGESVDFMRFYLVSVLPLTDIPAKEREKHVTI AGYFVFARQGEEHGY >gi|283548476|gb|GG730301.1| GENE 79 84738 - 85004 214 88 aa, chain + ## HITS:1 COG:ECs3769 KEGG:ns NR:ns ## COG: ECs3769 COG2938 # Protein_GI_number: 15833023 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 88 1 88 88 167 96.0 3e-42 MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFIRLLECDDPDLFNWLMN HGKPADAQLEQMVRLIQTRNRERGPVAI >gi|283548476|gb|GG730301.1| GENE 80 84985 - 85383 124 132 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_3029 NR:ns ## KEGG: EcSMS35_3029 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 131 1 131 135 189 92.0 2e-47 MVQWQSDLRVSWRAQWLSLLIHGLVAVLILLMPWPLSYTPLWMVLLSLVVFDSVRSQRRI NACQGEIRLLMDGRLRWQGQEWSIVSAPWMVKTGMMLRLRSDSGKRQHLWLAADSMDEAE WRDLRRLMLQQR >gi|283548476|gb|GG730301.1| GENE 81 85484 - 86005 783 173 aa, chain - ## HITS:1 COG:STM3045 KEGG:ns NR:ns ## COG: STM3045 COG0716 # Protein_GI_number: 16766346 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Salmonella typhimurium LT2 # 1 173 1 173 173 321 94.0 5e-88 MNMGLFYGSSTCYTEMAAEKIRDILGPELVTLHNLKDDSPTLMEQYDVLILGIPTWDFGE IQEDWEAVWEQLDDLDLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLLTKGVKFVGYWP TEGYEFTSDKPVIADGQLFVGLALDETNQYDLSDERIQNWCEQILGEMAEHWS >gi|283548476|gb|GG730301.1| GENE 82 86119 - 87015 787 298 aa, chain + ## HITS:1 COG:STM3044 KEGG:ns NR:ns ## COG: STM3044 COG4974 # Protein_GI_number: 16766345 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Salmonella typhimurium LT2 # 1 298 1 298 298 530 95.0 1e-150 MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQSDDLQALLA ERMDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVER LLQAPLIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVP LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA >gi|283548476|gb|GG730301.1| GENE 83 87039 - 87752 984 237 aa, chain + ## HITS:1 COG:STM3043 KEGG:ns NR:ns ## COG: STM3043 COG1651 # Protein_GI_number: 16766344 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Salmonella typhimurium LT2 # 1 237 1 237 237 434 90.0 1e-122 MKKRFMMFTLLATAFSGMVHADDAAIRQSLAKLGVQSTEIQPAPVTGMKTVLTNSGVLYV TEDGKHIIQGPMYDVSGASPVNVTNQLLMKHLNALENEMIVYKAPQEKHVITVFTDITCG YCHKLHEEMKDYNALGITVRYLAFPRQGLESQAEQDMKSIWCAKDKNKAFDDAMAGKGVK AATCDVDIANHYALGVQFGVSGTPAIVLSNGYVVPGYQGPKEMKEFLDAHAKQTSGK >gi|283548476|gb|GG730301.1| GENE 84 87758 - 89491 1800 577 aa, chain + ## HITS:1 COG:ECs3764 KEGG:ns NR:ns ## COG: ECs3764 COG0608 # Protein_GI_number: 15833018 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Escherichia coli O157:H7 # 1 577 1 577 577 1026 86.0 0 MKQKIQLRRREADETTELPGDLPPLLRRLYASRGVRTANDLERGLKGMLHWQTLTGVEKA VEMLHDAFEKNLRIMVVGDFDADGATSTALSVLSLRAMGCNTVEYLVPNRFEDGYGLSPE VVDQVHARGAQMIMTVDNGISSHAGVDHAHALGICVLVTDHHLPGEILPNADAIVNPNLA DCPFPSKSLAGVGVAFYLMLVLCNHLKSKGWFDARGIAVPKIVEYLDLVALGTVADVVPL DANNRILTWQGLSRIRAGVCRPGIKALLEIANREPAKLVASDLGFALGPRLNAAGRLDDM SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAM YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHP GMILKFGGHAMAAGLSLEEAQFERFQQRFGELVTEWLDPALLQGEVVSDGPLSAAEMTME VAQMLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTS CWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPV >gi|283548476|gb|GG730301.1| GENE 85 89800 - 90681 1051 293 aa, chain + ## HITS:1 COG:ECs3763 KEGG:ns NR:ns ## COG: ECs3763 COG1186 # Protein_GI_number: 15833017 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Escherichia coli O157:H7 # 1 293 73 365 365 531 96.0 1e-151 MSQGLEDVSGLLELAVEADDEETFNEAVAELDTLEDKLAQLEFRRMFSGEYDSADCYLDI QAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIRIAGEYAYGWL RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQ HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMED NKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL >gi|283548476|gb|GG730301.1| GENE 86 90691 - 92208 2114 505 aa, chain + ## HITS:1 COG:lysS KEGG:ns NR:ns ## COG: lysS COG1190 # Protein_GI_number: 16130792 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Escherichia coli K12 # 1 505 1 505 505 963 95.0 0 MSEQHVQGADAVADLNNELKTRREKLASLREQGIPFPNDFRRDHTSDQLHADFDAKENEE LEALNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGD ILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDES RNTFKVRSQIMAGIRQFMVGRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT LAQNVLGTTEVPYGEEVFDFGKPFEKLTMREAIQKYRPETNMADLDNFDSAKAIAESIGI KVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG REIGNGFSELNDAEDQAQRFQDQVNAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPVK >gi|283548476|gb|GG730301.1| GENE 87 92285 - 92851 371 188 aa, chain - ## HITS:1 COG:ECs3761 KEGG:ns NR:ns ## COG: ECs3761 COG1443 # Protein_GI_number: 15833015 # Func_class: I Lipid transport and metabolism # Function: Isopentenyldiphosphate isomerase # Organism: Escherichia coli O157:H7 # 5 185 1 181 182 271 72.0 4e-73 MVDAMRQEHVILLNEQGQPCGILEKYAAHTAATPLHSAFSCWIFNDQGQLLVTRRSLHKK AWPGVWTNSVCGHPQSGETAEDAVIRRARFELGADITAPASVYADFRYCATDPNGIVENE VCPVYAAQLVSQLQPNADEVMDYQWSNLEGVLCGIDATPWAFSPWMVMQASHEEARATLR NYCQQIIA >gi|283548476|gb|GG730301.1| GENE 88 93006 - 93761 533 251 aa, chain + ## HITS:1 COG:ygeR KEGG:ns NR:ns ## COG: ygeR COG0739 # Protein_GI_number: 16130767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Escherichia coli K12 # 1 251 9 259 259 394 85.0 1e-109 MSAGRLKKNGLIITMLLGAGLLLAGCSGSKSSDAGSYSGSVYTVKRGDTLYRISRATGTS VKEIARLNNISPPYTIEVGQKLKVSGGAKSSSSGKTSSKSSTKTAAVRPSSSVPQSSWPP VGQRCWQWPASGKVILPYSTADGGNKGIDISAARGTPIYAAGAGKVVYVGNQLRGYGNLI MIKHSEDYITAYAHNDTMLVNNGQNVKAGQKIATMGSTDATTVRLHFQIRYRATAIDPLR YLPPQGSKPKC >gi|283548476|gb|GG730301.1| GENE 89 93954 - 94586 498 210 aa, chain - ## HITS:1 COG:no KEGG:Shewana3_3791 NR:ns ## KEGG: Shewana3_3791 # Name: not_defined # Def: hypothetical protein # Organism: Shewanella_ANA3 # Pathway: not_defined # 3 203 5 201 224 94 29.0 4e-18 MTHDPFAQVRQAHRICGAYYQQILPMINEVAQKMGTSFLLWDTWSFNLPPRRRVNPLEYW KWNYLPMIDVSFVFSKQEQPSAPMATTDYVLDFKLVTDSELEYHQRVLLQYPEDEEPLAT KLKTPVEKAKSYLNIYLFSVMNDDAAYSSPEEMWDSYDGYPDTNSQVHLSDNNQIRGIGF SVPLMDIANDNSVDMLAEKIAEHREYLLRK >gi|283548476|gb|GG730301.1| GENE 90 94589 - 95308 308 239 aa, chain - ## HITS:1 COG:no KEGG:Shewana3_3792 NR:ns ## KEGG: Shewana3_3792 # Name: not_defined # Def: hypothetical protein # Organism: Shewanella_ANA3 # Pathway: not_defined # 1 230 1 227 283 137 36.0 3e-31 MLNAILEGKAGRITLNEEMQQSWRAVFQSYEDLLTAAIWSRINYLSPAAMDNLFSKLLGK TEESWGAFESISFWPKFAFPDSIDEKMKPYLSGKERFAEPDVVITFEHAALIIEAKPPAG GMQYQQQWRKELYTYSQDRDAKSIVHFLALGNLPSAAYSWFDELTAEFPHVKFHGMEWRK LREIFQYSEWEASQDKRIVADCLKALALYGIRAPLLPWQGFNQFLADNPLSHDFSFIKE >gi|283548476|gb|GG730301.1| GENE 91 95335 - 95859 432 174 aa, chain - ## HITS:1 COG:AGc1598 KEGG:ns NR:ns ## COG: AGc1598 COG1247 # Protein_GI_number: 15888215 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 7 169 41 203 206 158 47.0 6e-39 MKIVNAEVKHIPAIRDIYAHHVIHGTGSFETAPPDNNEMLARLEKIHRLGLPWVVALQEG KVIGYCYLTRYRERYAYRYTLEDSIYIDPAAQRQGVGKALLRHVIDWAETHGYRQLIAMV GDSNNQGSLKVHQQVGYREIGTLKDVGFKHGRWLDTVVLQRNLGESNSTLPPDC >gi|283548476|gb|GG730301.1| GENE 92 96680 - 99142 1957 820 aa, chain + ## HITS:1 COG:no KEGG:ECL_04313 NR:ns ## KEGG: ECL_04313 # Name: pgaA # Def: biofilm PGA synthesis protein PgaA # Organism: E.cloacae # Pathway: not_defined # 27 820 39 826 826 778 52.0 0 MFSMRRHANFIKRFKSVSCLFTASVLFPMPISAAVSDYDALVIEARGGNSAPLLRYLEDQ GKKSALTPNQVADWLQVSSWVDNNDKTTIEIWQQYRGQMNVPARGKVAAARAYRNQKNWN DSLAVWESVVQEEPDNVDVRTGWIMTLADARRNQQALSEANKWAQAHPGADSDALLAYVY HSQGKNWDALLAASQADDVDPGNKNAQSTLLSALSANRVSGPALNMTEVVPTADPVKRRL ELDAAAEMVRSSYTSARNEEERFIVADKALARYDQLLAAWKDEPSAQNDVRRARIDRMGA LLVRKRTSEVIKEYEALSASGEVPNYAKRWVASAWLSERQPEKTEAMLTSIYYPNGPIPV TPLGPEDQQDLFYAHIDNENFDAAKKQVDALIKDSPYLRRIYGSPTPQPNDNWLLGQSLL TQYHIAANELPEAEKLAEHLARTGSGNQGLRISYASVLEARGLPHAAERELKLAEVIEPS NLELERQQAYVALDLQEWKQADELTDDVIARSPDDEATLRLARIRDVHKMSEVRISGTQG ISSDSPVSGKHDFNINTAIYSPPIDDNWRLFTGFNFATGEFEEGKGISRDLAAGAEWTSR DYWAEMEVSGRNYGDGQKIGGRLSAWHDFNDNWRVGGSAERLSRNTPLRALRSGVYANGG DMYVRWYQNERREYQLSFAASHFSDGNDRIEYGLSGKERMWTTPRFTLDFTPGIGGSTNT KENVPYYNPKSDFSVVPGLSAEQVLYRHYDTVWTQQGIAGVGGYWQQGEDAGAIVQVGYG QRLKWNNVVDGGVMLVWDKRPYDGKRERNISLAFDLNVRF >gi|283548476|gb|GG730301.1| GENE 93 99152 - 101173 1946 673 aa, chain + ## HITS:1 COG:YPO1952 KEGG:ns NR:ns ## COG: YPO1952 COG0726 # Protein_GI_number: 16122198 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Yersinia pestis # 1 671 1 669 673 859 60.0 0 MLKRCLWLSALIAGWLMITACSSAHNTTPRYVPPAERTPLTADHPWPKNSFLVLGYHDVE DGAADQRYLSVRTSALSDQMAWLRDNGYNPISVQQILDAHDGKIVLPEKAVLLTFDDGYS SFYTRVWPLLKAYNWPALWAPVGSWVDSPANKKVDFGGLMTARDKFATWKMVEEMGKSPL VEVGAHTWNSHFGAQANPQGSKEPAVANRLYDKKTGTYETDEQYYRRINADIALITNKIK SVTGKSPRAWVWPYGAANGTTLNLAKEHGYKMAFTLNEGLANAAFLDDIPRVLISDNPSL KRFASQVAQVREPQTMRVMHVDLDYVYDKDPAQQKRNIDKLIQRVYDMRISHVFLQAYAD PKGDGNIRELYFPNRWLPMRADLFNYISWQLQTRAGVTVYAWMPVLAFDLDASIPRVTAW DPKTGRTAINHENYVRLSPWDSEARKRITEIYEDLAKHASFKGILFHDDAFLTDFEDASP EALAAYRAAGLPGSIEQIRSNPQAFERWTRLKSKVLIDFTKQLTQSVRNIRGPQVKTARN IYALPVLEPESEAWFAQNLTDFLNTYDWTAPMAMPFMEQVPAKEANAWLDRLVNAVAQTP GALDKTVFELQARDWRKSGDEAEISGKQIADWMRQLKLSGAGNYGYYPDDFISDKPEMSE IRSTFSSYWYPQK >gi|283548476|gb|GG730301.1| GENE 94 101170 - 102504 1342 444 aa, chain + ## HITS:1 COG:YPO1953 KEGG:ns NR:ns ## COG: YPO1953 COG1215 # Protein_GI_number: 16122199 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases, probably involved in cell wall biogenesis # Organism: Yersinia pestis # 1 444 1 444 444 688 76.0 0 MTDRIIAFLILCLMFSLPFGVAIIFTGEVMLNFVFFWPLFMSALWISGGVYFWFYRERHW KWGDDTPPPTLEGNPLVSILIPCFNEGINARETIGAALAQRYKNIEVIAINDGSTDDTHD VLEQLAVEYPCLRVIHLAENQGKALALKTGAAAARSDYLVCIDGDALLDRDAVAYLVAPL IQFPRVGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQIFTVSGVVAAFRRR ALAEVGYWSPDMITEDIDISWKLQLRHWSVFFEPRALCWILMPETLKGLWKQRLRWAQGG AEVFIVNMRRLWSWEFRRMWPLFLEFCFSTAWSFAYAISIVLFLLGLMIPMPDSLYVQHL FSPAFTGLILGVVCLLQFAVSLMIERRYEKGIGASLFWIIWFPVVYWMLSLFTTLVAFPK VMLKRKRGRARWVSPDRGIGRIES >gi|283548476|gb|GG730301.1| GENE 95 102501 - 103007 478 168 aa, chain + ## HITS:1 COG:no KEGG:YE2481 NR:ns ## KEGG: YE2481 # Name: hmsS # Def: hemin storage system protein # Organism: Y.enterocolitica # Pathway: not_defined # 1 130 1 134 155 125 45.0 6e-28 MSQPLIFTERRLLPRIIDVLLTVIAWVGFLYLIYKGLIAALAHSPYMGVRPFFTTLDTVT FYILVALVNGLVLIGWAKYNQFRFRVERRSRRPGLEHHELAESLRITRELVTELNKARVL TVHHHENGEISHIDVDKHIADNRLPPPTPAMLEYLPPEREPSLQKRPE >gi|283548476|gb|GG730301.1| GENE 96 103073 - 103318 217 81 aa, chain + ## HITS:1 COG:ECs5108 KEGG:ns NR:ns ## COG: ECs5108 COG3592 # Protein_GI_number: 15834362 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 6 81 1 76 76 144 85.0 4e-35 MRGNVVEKELLDAGYRAYTGEKIDVYFNTAICQHSGNCVRGSAKLFNLKRKPWIIPDEVD VATVIKVIDTCPSGALKYRQK >gi|283548476|gb|GG730301.1| GENE 97 103330 - 103602 404 90 aa, chain + ## HITS:1 COG:yjdJ KEGG:ns NR:ns ## COG: yjdJ COG2388 # Protein_GI_number: 16131953 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli K12 # 1 90 1 90 90 151 83.0 2e-37 MEILAGHNKFYVNDAEGNQVAEIVFVPTGEHLSIIEHTDVDPSLKGQGVGKQLVAKVVEK MRAENRKVIPLCPFAKHEFDKTREYDDIRA >gi|283548476|gb|GG730301.1| GENE 98 103645 - 104574 1124 309 aa, chain - ## HITS:1 COG:yahB KEGG:ns NR:ns ## COG: yahB COG0583 # Protein_GI_number: 16128301 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 309 1 309 310 602 93.0 1e-172 MNSIFTEENLLAFTMAARYSSFSKAAEELGLTTSAISYTIKRMEMGLDVVLFTRSTRSIE LTESGRYLFRKATDLLNDFHAIKRSIDTIAQGIEARVRICINQLLYTPQHTARLLQVLKK QFPTCQITVTTEVYNGVWDSIINNLANIAIGAPDTLLDGGGIDYTEIGAIRWSFAIAPDH PLAFMPEPISESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEG IGFLPDYMVREAMEKSLLVTRQIHNPRQDSRMLLATQHSATGRVTQWIKKEFGPQGVLTG IYQDLLHRE >gi|283548476|gb|GG730301.1| GENE 99 104967 - 105572 730 201 aa, chain + ## HITS:1 COG:yahD KEGG:ns NR:ns ## COG: yahD COG0666 # Protein_GI_number: 16128303 # Func_class: R General function prediction only # Function: FOG: Ankyrin repeat # Organism: Escherichia coli K12 # 1 201 1 201 201 298 72.0 6e-81 MSEKELITEFLLAAEQGNAEGLKSCLAKNVDINATNRQGRTAIIIASLSKHYDCVSLLIA AGADINKQDQTCFNPFLISCLTNDLTLLRIVLPANPDLNCLSRFGGVGITPASEKGHVEI VRELLLRTDINVNHTNFVGWTPLLEAIVLNDGGAKQQEIVKLLLDHGANPHMTDKYGKTP LELAREKGYHEIAELLIAAGA >gi|283548476|gb|GG730301.1| GENE 100 105690 - 106487 351 265 aa, chain + ## HITS:1 COG:no KEGG:ECO103_0297 NR:ns ## KEGG: ECO103_0297 # Name: yahE # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 260 27 286 287 294 55.0 3e-78 MNLLIPEQQRLLTLLSEGCDNAPNSCRLALTHCEDLFLPGEQVRFTESGIAVGNDKWIET AGCLPWQMPPWAPDAASLAAIRWQRWEEAIRQQLSSDDTLFLYQGDNPFYQEITRQLLNR RQTLLAALHTGENISTAVSHLIGLGIGLTPSSDDYLVGLSTILFIPGHPLGKYREEFFAA LQRAGNNTTLLSKITLEEAFHQRYRESVGRLLNHIITEQQPVATQYITDIKNIGSSSGCD MLYGMADACALSRRSGGNYVDQDSC >gi|283548476|gb|GG730301.1| GENE 101 106519 - 108012 2017 497 aa, chain + ## HITS:1 COG:ECs0369 KEGG:ns NR:ns ## COG: ECs0369 COG0074 # Protein_GI_number: 15829623 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 497 19 515 515 846 87.0 0 MSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEEAKSGDLMIVIKGASEAAND QTLVAIEDLFTHKEQGGQHEARYATLASAKKHVPDSNLAVISVNGLFAAREARQALQNNL NVMLFSDNVSLEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGAS GTGSQELSVRIHEFGGGISQLIGTGGRDLSEKIGGLMMLDAIGMLEADPQTEIIALISKP PAPAVARKVLERARACHKPVVVCFLGREAAPADEKGLQFARGTKEAALKAVLLTGVKKES LDLHPLNWPLIEEVRARLTPQQKYIRGLFCGGTLCDEAMFAAMEKHAEVYSNIHPDPAFR LKDLNRSVAHTFLDFGDDDFTNGKPHPMIDPTNRISRLLQEARDPEVGVIVMDFVLGFGS HEDPVGVMRDAIVEAKAIAAADGRPLEILGYVLGTDLDTPSLEKQCQMLTDAGVIWASSS TNTGLLAREFICKGEEA >gi|283548476|gb|GG730301.1| GENE 102 108012 - 109427 1871 471 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_0360 NR:ns ## KEGG: ECUMN_0360 # Name: yahG # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 470 1 470 472 886 94.0 0 MSQTLFNQPLNVINVGIAMFSDDLKKQNVAVTQLDWTPPGQGNMQVVAALDDIADSPLAD KIAAANQQALERIIQSHPVLIGYDQAINVVPGMTRNTILHAGPPIRWEKMCGAMKGAVTG ALVFEGLAKDLDEAAELAASGEIIFSPCHEHDCVGSMAGVTSASMFMHIVENKTYGNRAY TNMSEQMAKILRMGANDQSVIDRLNWMRDVMGPMLRDAMKLAGEIDLRLMLAQALHMGDE CHNRNNAGTALLIQALTPWIIQTGYPVEQQREVFEFVLSSDYFSGPTWMAMCKAAMDAAH GIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGRDIGDSAIT ETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPTAID ITRVGGTGILPVINTAIAHKDAGIGMIGAGIVHPPFACFEKAILNWRDRYC >gi|283548476|gb|GG730301.1| GENE 103 109548 - 111098 1964 516 aa, chain + ## HITS:1 COG:slr0360 KEGG:ns NR:ns ## COG: slr0360 COG2252 # Protein_GI_number: 16331283 # Func_class: R General function prediction only # Function: Permeases # Organism: Synechocystis # 10 489 13 524 535 227 31.0 4e-59 MNSIKLEWKRGDWAAYFGLMTNNLTNLLTMMGLLIFVVGIPTEIVYGRIAPAFGLAVLVA SVCYAWFGLQMAKHTGRNDVTALPSGPSAPSIFTVTFLVLMPVYQQTKDANFAIQIALVW CFVEALILVGGSFLGETIRKMIPRTVLLSCLSGLGLLLLAMNPMLQAFEAPTVSFIVLLL IFINWFGKKPIFARIPTGLLLLIAGTALAWISGLQSPEAIKSSMASFGFNPPEIHVDSFL QGLPHALPYLASAVPLGLANYIFDLENIESAHAAGDEYNTRKVMMANGFASMLGCMLGNP FPVTVYVGHAGWKAMGASIGYTLASGITMFLVPLFGLGAFMLAIIPMTAIVPILVFIGVV TANQVVRETPKVEVPVIFICLFPWIANWALTIVNSVMGAAGTSAGKLGSDLLHSKGVYYD GLVHLGSGAPLASMLWGCVAIFAIMNKPLRGAIAAAFGALLSLFGVIHSPAVGFAEGSSM MFVLAYLMMGGMFVLKHILDSREAVTAPEQQPTKST >gi|283548476|gb|GG730301.1| GENE 104 111125 - 112075 1078 316 aa, chain + ## HITS:1 COG:ECs0372 KEGG:ns NR:ns ## COG: ECs0372 COG0549 # Protein_GI_number: 15829626 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Escherichia coli O157:H7 # 1 316 1 316 316 529 91.0 1e-150 MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYNIVLTHGNGPQVGLD LRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNRLARRGEQKAVTVVTQVEVDK NDPGFANPTKPIGAFFSAAQRDELQRVNPGWRFVEDSGRGYRRVVASPEPKRIVEAEAIK ALTQQGFVVIGAGGGGIPVVRGEQGDYQSVDAVIDKDLSTALLAQEIHADILVITTGVEK VCIHFGKPHQQALDTVDVATMTRYMQEGHFPPGSMLPKIVASLTFLARGGKRVIITTPEV LPAALRGETGTHIVHS >gi|283548476|gb|GG730301.1| GENE 105 112088 - 113470 1623 460 aa, chain + ## HITS:1 COG:yahJ KEGG:ns NR:ns ## COG: yahJ COG0402 # Protein_GI_number: 16128309 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Escherichia coli K12 # 1 459 1 459 460 829 89.0 0 MKESNSRREFLSQSGKMVTAAALFGAVAPVAYAADPVGNTCGSKSTMTINDKHYYLDNVL LEAGFEYENAVVVHTRTALQTVEIQDGKIVALRENKQHPDATLPHYDAGGKLMLPAMRDM HIHLDKTFYGGPWRSLNRPAGTTIQDMIRLEQKLLPELQPYTQERAEKLIDLLQSKGTSI ARSHCNIEPVSGLKNLENLQAVLARRQPGFACEIVAFPQHGLLLSKSEPLMREAMQAGAH YVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETSPAGVAAVNYMVETVEKTPQL KGKLTISHAFALATLNEQQVDALATRMAAQQITIASTVPIGTLHMPLKQLRDKGVEVITG TDSVIDHWSPYGLGDMLEKANLYAQLYIRPNELNLSRALFLATGDVLPLNDKGERVWPKA QDEASFVLVEASCSAEAVARISPRTATFHKGQLVWGHVAS >gi|283548476|gb|GG730301.1| GENE 106 113516 - 114397 811 293 aa, chain - ## HITS:1 COG:STM3024 KEGG:ns NR:ns ## COG: STM3024 COG2215 # Protein_GI_number: 16766326 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 292 1 287 288 399 82.0 1e-111 MGEFSTLLQQGNAWFFIPSAILLGVLHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAAT LSHTAVVWLIALGGMYISKAFTAQAVEPWLQFVSAIIILGTAFWMFWRTWQGEQNWLART HHEHHHDHDDHHHHHHHHDHDDDHHHHHHEHDHDHAALAGLSEGSKEYQDAHERAHANDI QRRFAGKEVTNGQILLFGLTGGLIPCPAAITVLLICIQLKAFTLGATMVLCFSLGLALTL VTVGVGAAISVQQAAKRWSGFNTLARKAPYFSSVLIAMVGLYMGIHGYMGIVG >gi|283548476|gb|GG730301.1| GENE 107 114518 - 114790 361 90 aa, chain + ## HITS:1 COG:ECs2911 KEGG:ns NR:ns ## COG: ECs2911 COG1937 # Protein_GI_number: 15832165 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 143 95.0 7e-35 MSHTIRDKQKLKARTSKIQGQVAALKTMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGH LTEHIVHQGDEIKREEDLDVVLKVLDSYIK >gi|283548476|gb|GG730301.1| GENE 108 115286 - 115447 69 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291085381|ref|ZP_06352911.2| ## NR: gi|291085381|ref|ZP_06352911.2| ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] ribosomal RNA large subunit methyltransferase J (rRNA(uridine-2'-O-)-methyltransferase) [Citrobacter youngae ATCC 29220] # 1 53 9 61 85 82 90.0 1e-14 MDAGSAPTRQADGIRRIAREATIFPPGAWDAREAAASLARSQESVLQRNDEHE >gi|283548476|gb|GG730301.1| GENE 109 115577 - 116806 1104 409 aa, chain - ## HITS:1 COG:STM3022 KEGG:ns NR:ns ## COG: STM3022 COG0814 # Protein_GI_number: 16766324 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 409 1 409 409 679 92.0 0 MSKIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQ FILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHI AIDLRVRMLVSLGVVLVLNLIFLMGRQATIRVMGFLVFPLIAYFLFLSLYLTGSWQPTLL TGQMSFDQHTLHQVWISIPVMVFAFSHTPIISTFAIDRREKYGEQAMGKCKKIMKVAYVI ICLSVLFFVFSCLLSIPTNYIEDAKNEGVTILSALSMMPNAPAWLSISGIIVAVVAMSKS FLGTYFGVIEGATEVVKTSLHQVGVKKSRAFNRALSIMLVSAITFIICCINPNAISMIYA ISGPLIAMILFIMPTLSTYLIPALKPYRSVGNLITLIVGLLCVSVMFFG >gi|283548476|gb|GG730301.1| GENE 110 116949 - 117404 470 151 aa, chain - ## HITS:1 COG:STM3021 KEGG:ns NR:ns ## COG: STM3021 COG4125 # Protein_GI_number: 16766323 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 151 10 160 160 256 89.0 9e-69 MQHDTVQRRSLVERIFHAVCFEGIATAILAPTTAWLMQRSVLEMGGLTIILATTAMIWNI IYNALFDRLWPSHRVKRTAKVRAFHALGFESGFIVIGVSIVAYVLNVSLLQAFTLEIGFF LFFLPYTMFYNWAYDTLRERVMKRRQQRVTA >gi|283548476|gb|GG730301.1| GENE 111 117506 - 118390 949 294 aa, chain + ## HITS:1 COG:STM3020 KEGG:ns NR:ns ## COG: STM3020 COG0583 # Protein_GI_number: 16766322 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 286 1 286 287 507 84.0 1e-144 MRYSPEALTAFVETVACGSFSAAARRLRKSQSTISTAIAHLEADLGFALFDRSSRQPTLT EEGKRVLGYVQAILTASERLDEAAISLSGETEARLTFVLSDTLHPDVLEELMVQFDRKFP HTEFECLIGEDEDVIDLLQKGRAQVGLIEAREDYPTDMGVTRLPMQTWMGVYVAASHPLA SQKKLQWEQLHTWRELRLNTYLESGTNVARGPVWSAPNYLLLLSMAVQGFGWCALPCALV EEFAAEKPLVQLQMPGWPKAISIDLLWNKKSPPGVAGSWLRDHLQQSGVQMTNK >gi|283548476|gb|GG730301.1| GENE 112 118493 - 119671 1312 392 aa, chain + ## HITS:1 COG:yqeF KEGG:ns NR:ns ## COG: yqeF COG0183 # Protein_GI_number: 16130748 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Escherichia coli K12 # 1 392 2 393 394 676 92.0 0 MKEVVIVGALRTPIGCFQGTLARHSAVELGSMVVRALLERTGVDVHAVDEVILGQVLTAG AGQNPARQSAINGGLPNTVSAITINDVCGSGLKALHLATQAIQCGEADIVIAGGQENMSR APHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHMGVTAENLAREYGISRELQDAYAL HSQHKARMAIDAGRFKDEIVPVVTQRNGQSFVVDTDEQPRTDASAEGLARLDPTFDRLGS VTAGNASSINDGAAAVMMMSEAKAQELNLPVLARIRAFASVGVDPALMGIAPVYATRRCL ERVGWQLADVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVS LVHEMVKRRAHKGLATLCIGGGQGVALAIERD >gi|283548476|gb|GG730301.1| GENE 113 120122 - 121006 821 294 aa, chain + ## HITS:1 COG:kduI KEGG:ns NR:ns ## COG: kduI COG3717 # Protein_GI_number: 16130747 # Func_class: G Carbohydrate transport and metabolism # Function: 5-keto 4-deoxyuronate isomerase # Organism: Escherichia coli K12 # 17 294 1 278 278 558 93.0 1e-159 MLSVKAFTVNLSLEVNVDVRQSIHSAHAKTLDTQELRNEFLVEEVFVADEYTMVYSHIDR IIVGGIMPVAKTVAVGGEVGKQLGVTYFLERRELGVINIGGPGTITVDGQCYEIGHRDAL YVGKGAKEVVFASVDAAKPAKFYYNCAPAHTTYPTKKVTPADVAPVTLGDNLTSNRRTIN KYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMEEDACVFHMMGQPQ ETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKDLR >gi|283548476|gb|GG730301.1| GENE 114 121065 - 121826 1037 253 aa, chain + ## HITS:1 COG:kduD KEGG:ns NR:ns ## COG: kduD COG1028 # Protein_GI_number: 16130746 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 253 1 253 253 480 96.0 1e-135 MILNAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIERVTALGRRFL SLTADLRQIDGIPALLERAVAEFGHIDILVNNAGLIRRDDAINFSEKDWDDVMNLNIKSV FFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHN INVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLASSASDYIN GYTVAVDGGWLAR >gi|283548476|gb|GG730301.1| GENE 115 122204 - 123562 1523 452 aa, chain + ## HITS:1 COG:STM3016 KEGG:ns NR:ns ## COG: STM3016 COG0477 # Protein_GI_number: 16766318 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 452 21 472 472 809 97.0 0 MNMFVSISAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNG WLSFRLGRKYSLMAGAILFVVGSLGSALASSVEMLIFARVVLGVAVGIASYTAPLYLSEM ASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPN SPRWLAEKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKINRNVRRAVF LGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDK AGRKPALKIGFSVMAIGTLVLGYCLMQFDNGTASNGLSWLSVGMTMMCIAGYAMSAAPVV WILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNVAFIG ITFWLIPETKNVTLEHIERKLMSGEKLRNIGV >gi|283548476|gb|GG730301.1| GENE 116 123670 - 123996 326 108 aa, chain - ## HITS:1 COG:CAC3376 KEGG:ns NR:ns ## COG: CAC3376 COG1917 # Protein_GI_number: 15896618 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Clostridium acetobutylicum # 2 107 5 110 114 130 57.0 7e-31 MFIFHKDTTLDDLGNGVTRRILAHDGKMMAVEVNFEAGAVGPMHSHPHEQLTYVLSGEFE FTIGEEKHVVRAGDTLYKQPNIMHGCVCLQPGTLLDTFTPVREDFLQR >gi|283548476|gb|GG730301.1| GENE 117 124138 - 124830 862 230 aa, chain + ## HITS:1 COG:ECs3697 KEGG:ns NR:ns ## COG: ECs3697 COG1794 # Protein_GI_number: 15832951 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Aspartate racemase # Organism: Escherichia coli O157:H7 # 1 230 1 230 230 378 79.0 1e-105 MKTIGLLGGMSWESTIPYYRLINEGVKQQLGGLHSAQILLHSVDFHEIEACQSSSDWDKA GSLLAQAAVGLQQAGAQGIVLCTNTMHKVAEAIEAACDVPFLHIADATGRAIQKRQMNNV ALLGTRYTMEQDFYRGRLQAEFGINTVIPDADERQKINQIIFDELCLGEFSDASREYYLR VIGELAKQGAQGVIFGCTEIGLLVPAELSPLPVFDTAAIHAEDAVAFMLS >gi|283548476|gb|GG730301.1| GENE 118 124933 - 126063 961 376 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_3386 NR:ns ## KEGG: EcSMS35_3386 # Name: not_defined # Def: pilus biogenesis initiator # Organism: E.coli_SECEC # Pathway: not_defined # 12 376 5 363 364 287 44.0 5e-76 MKWMKLLLISGLLASDMVLADAIPAGPTPNVTSTQEYILPSGAPSDTYLWTEDYLGFYGY AARTTTYNCNFTELNQTCTHQSNASTITVTLTEQRSQMQHQIKLQGYFQAYFVAQATDIE PSQICGYHRSLNTGVYTNCSLSDGNKIATNSRLLTVFIPQSEMNNLPVGGVWKGSLKLRA QPNGSGAFDYNADITLKGKATGKQDIYFPEFNGANPLVQLDLHPTGSVTGNSFAEDVTTL DMCLYDGYNSNSDSMTLSFSDEGRAGAGRNEGDFSIYNTGTGGTAAAERIDYHLEMFDPH SKSWMAVKNNNSFVLSAGVNGQDQIRPVRLPSISYPVLCAPTPLRLIVDKFRVTEKAAGY YKGTLHVEFSPSLNSI >gi|283548476|gb|GG730301.1| GENE 119 126060 - 128759 2850 899 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_3387 NR:ns ## KEGG: EcSMS35_3387 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 17 896 17 891 894 931 54.0 0 MKKSILGLLIFSILNVANAREEKIPPGFEAIVLGQQEYVDVYLAGRPLGKFFATVNLDTV KFDQPQKIIAAMELGDDKSRINAIAAKLNQPLERHGELACTAINSGAGCGYLTTQDVALI YNDEQNSVNLFLNKAWYPDAGKHTLYMVPNKGDDIVNALIHQQDINVAIQDEFKSAYLQG TGALGVTENSYIGAYWSLNGYESDGETDTETDVSELFYRYDLLSRFYVQGGRMDSRSLFS LDGGNFNFSFLPLDTFDGVRAGSTLSYLNREQAGQGTPVNVLLSRNSRVDVYRDNQLLGS FYLAGGNQTLDTSSFPSGSYTLQLKIYESNQLARTEVVPFTKTGSMNDGHIQWFVQAGRL ADSDSSTLNNDSDDNATSAQAGLRLPVTAQSELMLGVASVDNNFSAEINGHITPALGAFG NVDLQNGFFYNDQGGRGNMQQLNWRAENWPALNFYRKDTSGGQCSGDNDADDYDLNCFES ISAGLTQNIFSWNLSLNWNRTRNHADYHTRWDNREDFTSNYFSQTDANSTSDSVQLSASR SFNLSNWILNANLGVFTRDDSGSNGNDHGAYLTFSFSEAPRQDNNARSRSTTLGVDYRTS KNSSDQTSWNLARTWYSDNVNHKEFGVSLNGINTDTLDSGVNGRIDGLYGNMSGYLTDSY DRQDREHTTAFTGSYSSTLAISRHGVQLGRAGNGDPSAAVLVAVKKMDDDSADELAIDAS ANGSKASLTGDESVLFPYTGYELGYVEVNDSSRKHQRGTTNLIAGSGKQNLMLLPGKLRY REVSATFNYNYIGRLLLPASLQTLPVIGLNSAMLLLSEDGGFTLEMASSAKDLYLLTGQT FLKCPLKVVKKRASIRYAGDITCSPLTYDRLPPQIQVQAQLKQAQRKQALETAQRESVQ >gi|283548476|gb|GG730301.1| GENE 120 128836 - 129330 682 164 aa, chain - ## HITS:1 COG:no KEGG:ECO103_3841 NR:ns ## KEGG: ECO103_3841 # Name: not_defined # Def: putative fimbrial subunit # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 164 1 164 166 166 64.0 2e-40 MKSIISKSLLALAMVSVMGSAMAVQKDITVTANVDAALDMTQVDNSALPKSVEMQYIPGN GLAPYQLQTKIWANDITKDVNMQLVSDAELVNSLGGATVPLTVSWGGEALSTTAIPLDAA KLFPNKDTALQTGSVAKTLKIAQTTQGTLATGTYQGVVSIYLYQ >gi|283548476|gb|GG730301.1| GENE 121 129360 - 130067 576 235 aa, chain - ## HITS:1 COG:no KEGG:ECO103_3842 NR:ns ## KEGG: ECO103_3842 # Name: not_defined # Def: putative fimbrial protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 235 5 238 238 232 51.0 9e-60 MNIKRSLCVISFACAAPLCFANMSVYPMAVDINDQGEGNVSVISRTNEVQYIKTTILSIS GRNTPQEKETEIKAGDPNSLVVMPPKFALPAGATKTVRLVAMEPVQEETTYRVKFEAAPQ LDDPLGESKTVKPQVTINRIWGVLVSIPPEHPQLKMGLLPNGAIVNNGNQRFKILKVGLC KKSQAEKDCAWQGVDKNIYPRSSFTPKNILSYDRVVIQYWNWIDKSKYSKDFPIH >gi|283548476|gb|GG730301.1| GENE 122 130098 - 130268 95 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086216|ref|ZP_06571400.1| ## NR: gi|291086216|ref|ZP_06571400.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 6 56 1 51 51 82 98.0 8e-15 MPRNHLRGVSIHFVLTHLLANIIFFYMLPVYKIVSEQNHQSVNINQIKCIHYSMGT >gi|283548476|gb|GG730301.1| GENE 123 130561 - 131130 624 189 aa, chain - ## HITS:1 COG:no KEGG:ROD_11791 NR:ns ## KEGG: ROD_11791 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 4 187 5 186 186 243 62.0 3e-63 MKNSMKTLLIGSGLLLSAVAHADETNCQLTVSQAEVNYSQMRRDDIVTTQQNWHKMAERE VTLSASCPEKMQMAVLAQGAAGEKGRFQFGQKGGVAFKVSNVFIDGKEYRVGKTTDQINL TPESGSAASLYIHNNDAIVAVDNNTVPEGKQMSFTVTLFPVLNDAAFSGNNDETQLETDI TWQLLTRVK >gi|283548476|gb|GG730301.1| GENE 124 131127 - 133535 2387 802 aa, chain - ## HITS:1 COG:STM4572 KEGG:ns NR:ns ## COG: STM4572 COG3188 # Protein_GI_number: 16767813 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 11 802 10 802 802 837 53.0 0 MHKQRPLASCIRSALYCALPLFFAPHLQAREVTFDTGILQSRGLSSDLNRYFAETPRFLP GVHSVRVVVNGKERGTAAARFGEDGTLCIDSDFLDFAGLMPVPLKANETCHNIADDYAQA VVNALPNQDAVELYLPPQALNGLNGEIKNFQHGGTAGMLNYSLFSTNSEYDGGDSNRYSQ ASLEGGFNTADWALRSRYILTDDDGDKNAESIYTYAEHVFMAQKMTMQVGEINANSDVLS GVPITGVQLTPTSGLQNGGTGVSVSGIARTSQARVEVRQNGRLIFNTLVPAGPFTLDDVP MVRSNVDLEVTVIESDGASSRFIVPASAVKAQQLARPQGLSAAIGRVRNIDGDYDDPWVF NISNGWRVMPNLNLLASGLLAEDYQASGARAEVLLTDSWDISASVAGSREQFGDEDSGLK TELQTSVALNEQLSFSNSVSHYSGGYRELSDALDDDFQPYDNTWSTNLSWASGIAGTFNL GFNYNQASGDGEDSRYILASWGKTFKYASISVNWQSAVGNVDDDQDDDMLYVNLSIPLGG SQSISSYMRNQGNRTSYGVQNSGALSDHTNYSLSADRDNESNDNSFNANVSSNLHYTQLS IGGGSNGSHQRNYNATLSGGIAMHKSGVTFTPYSIRDTFAIAKLNESKSGVEINTPQGTV WTDYWGQAVIPGLNEWRNSRIEIDANKLPQSMTLANGTKYIAAAHASVSEVSFKVLNSRR VMLRVKRPDGSALTKGLSIVDGKGNYIVTSVDDGHVFLSDAEQIDALYAMDDNNNRICKI AYTLSEKRDEEAFYEEVNGECR >gi|283548476|gb|GG730301.1| GENE 125 133549 - 134262 750 237 aa, chain - ## HITS:1 COG:STM4573 KEGG:ns NR:ns ## COG: STM4573 COG3121 # Protein_GI_number: 16767814 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Salmonella typhimurium LT2 # 8 232 11 231 235 288 66.0 5e-78 MTYSKYTLLKTALAFSLLFSQISAYAAGMVPETSLLVIDEATHSGTMNVKNTDTTPALLY TTIIDLPDDTNNGIKLIATQPVVRLEPGQTQQLRFILQNNAPLDVEHYKRVTFEGIPPKN DDKKIKIGINIRQDLPVLIRPAKLAVVTDAWKTLQWSGSGTAAKVTNPSKYVVRLSQNVI FQPSGAAGSLKKTYILPGETLDIAVGKSVGGNNKVKFFPASRYGVEVPSFIADFSAK >gi|283548476|gb|GG730301.1| GENE 126 134370 - 135041 441 223 aa, chain - ## HITS:1 COG:no KEGG:ECL_02082 NR:ns ## KEGG: ECL_02082 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 223 1 220 220 146 41.0 6e-34 MKKTLITVALLICAGSTFADTSTLLKVNGKLTNAACAPELEGGGIVDYGYVHLSGLSASE DNILTQKKVKLTINCTAPTKVSFSATDDRADSRPAKVLKTLGWNDTGTMTPAPAYVFGVG TTTEGVKIGNYALVAVKGTVDGKSTYILRRTNNSAWGSANDMLVANTQDSEITVAEAGGS APASFNTATFTLKVNLTVEDTDTLNITDDTPIDGQTTFTLNYL >gi|283548476|gb|GG730301.1| GENE 127 135081 - 135755 764 224 aa, chain - ## HITS:1 COG:no KEGG:ECL_04607 NR:ns ## KEGG: ECL_04607 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 224 1 223 223 226 61.0 8e-58 MKKTLLAIILAACTTSAFAAETAVLKVKGVLTNAACSPTLSNSGVVDYGTIHLSELSDSA VNQLGQKTIDLTITCDAATKVSWHLEDNRVDSRAGITVDNGDAAGGAVSDTDKTYGVGLT ADGVAIGNYSLFVKTANVLADGESVDTIVMDGNNNVWSKSANGLTAGQNNRDITVATAGT MEPLPFTSATFPLATSLAIQDTKTLAITDDTDLDGQVTISLRYL >gi|283548476|gb|GG730301.1| GENE 128 135964 - 136653 599 229 aa, chain - ## HITS:1 COG:no KEGG:ECL_04607 NR:ns ## KEGG: ECL_04607 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 1 229 1 223 223 200 51.0 3e-50 MKKTILSLALALCAGSVYADPTAVLQVDGKLTNSSCTPEFTNGGIIDYGYVRLGELSATE TNQLGQKKIDLNIHCISPTKIAWTIVDDKADTMATGITIKNAFYDGSSTNATKGGNWTFG VGKTAGGVAIGAYSAFIDAGNVLADTNKVRVIYQQGSGMSWGAGAAYYLQGDNYKSWSVA TTTGAIEPLAVSSVTFPIVTSLAIQDTTTLAISDDTNLDGQLTVNLRYL >gi|283548476|gb|GG730301.1| GENE 129 136898 - 137821 760 307 aa, chain - ## HITS:1 COG:lysR KEGG:ns NR:ns ## COG: lysR COG0583 # Protein_GI_number: 16130743 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 298 1 298 311 503 87.0 1e-142 MPAVNLRHIEIFHAVMTAGNLTEAARMLHTSQPTVSRELARFEQVLGLKLFERSRGRLHP TVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIVCLPVFSQSFLPPLLQPFLARY PQVNIQIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTKRTELLSLDEVCVLPPGHPLTR KSVLTPQDFQGENYISLSRTDSYRQLLDTLFNEHQVKRRMVIETHSAASICAMVRAGVGI SVVNPLTALDYADSGIAIRRFSIPVPFTVSLIHPLHRPTSALVDAFSAHLLAEMPGIVAL CKSSLTR >gi|283548476|gb|GG730301.1| GENE 130 137938 - 139194 1516 418 aa, chain + ## HITS:1 COG:lysA KEGG:ns NR:ns ## COG: lysA COG0019 # Protein_GI_number: 16130742 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Escherichia coli K12 # 1 409 1 411 420 747 88.0 0 MPRSLNNTDTDLTADNLLRLPAEFGCPVWVYDAQIIRAQIAKLSQFDVVRFAQKACSNIH ILRLMREQGVKVDSVSLGEIERALAAGYVPGNDEIVFTADMIDNATLARVSELQIPVNAG SVDMLEQLGQLSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYSDLPAALAVIQRYQ LKLVGIHMHIGSGVDYGHLEQVCGAMVRQVIEFGQDLEAISAGGGLSIPYREGEEAIDTD HYFGLWNAAREQIAQHLGHPVKLEIEPGRFLVAEAGVLVAQVRSVKAMGSRHFVLIDAGF NDLMRPAMYGSYHHISALAGDGRSLENAPQIETVVAGPLCESGDVFTQQEGGKVETRLLP AVAPGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGAARLIRRRQTIDELLALELI >gi|283548476|gb|GG730301.1| GENE 131 139288 - 140298 1080 336 aa, chain - ## HITS:1 COG:STM3012 KEGG:ns NR:ns ## COG: STM3012 COG1609 # Protein_GI_number: 16766314 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 335 2 336 340 573 83.0 1e-163 MTTMLDVSRHAGVSKATVSRVLNGTGQVKESTRQKVFKAMQALDYRPNFLARSLANRTSN SIGLVVSTFDGFYFGRLLQQASRQTESHGKQLIVTDGHDTPEREQEAVQMLADRQCDAII LYTRYMSEQAIMSLMDSIAMPLLVINRDISQARDRAIFFEQEEAAYQAVSYLISQGHRDI ACITVPGHTPTGKSRLMGYRKALEKNGIPWDPGKVKYGDSTMTRGYEACRELLEEGVTFS ALFACNDDMALGASKALYQAGLKIPMDVSLFGFDDAPSAKWLEPGLSTVYLPIDTMITTA IDQAIRLANGESVEPIPPFTGKLVLRESVTTGPYFT >gi|283548476|gb|GG730301.1| GENE 132 140312 - 141340 808 342 aa, chain - ## HITS:1 COG:STM3011 KEGG:ns NR:ns ## COG: STM3011 COG1609 # Protein_GI_number: 16766313 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 342 1 342 342 608 90.0 1e-174 MATIKDVARLAGVSVATVSRVINDSPKASEASRLAVTSAMESLSYHPNANARALAQQSTE TVGLVVGDVSDPFFGAMVKAVEQVAYNTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALV VHVKIIPDAELASLMKQIPGMVLINRILPGFEQRCVALDDRFGAWLATRHLIQQGHTRIG YLCSNHTISDAEDRLQGYYDALTESNIPINDRLVTFGEPDESGGEQAMTELLGRGKNFTA VACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA ELALALAEKRPAPEITHIFNPTLVRRHSVSTLTEPGNSSSND >gi|283548476|gb|GG730301.1| GENE 133 141937 - 144096 2367 719 aa, chain + ## HITS:1 COG:STM3010_2 KEGG:ns NR:ns ## COG: STM3010_2 COG0318 # Protein_GI_number: 16766312 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Salmonella typhimurium LT2 # 204 719 1 516 516 988 92.0 0 MLFGFFRNLFRVLFRVRVTGDVSALQGERVLITPNHVSFIDGILLALFLPIRPVFAVYTS ISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVEQGRPVVIFPEGRISTTGSLMKIYDG AGFVAAKSGATVVPVRIEGAELSRFSRLKGLVKQRLFPRIQLHILPPTHLPMPEAPRARD RRKIAGEMLHQIMMEARMAVRPRETLFESLLAAKYRFGAGKNCIEDVNFTPDSYRKLLTK TLFVARILEKYTAEGEKIGLMLPNAGISAAVIFGAIARRRIPAMMNYTAGVKGLTSAITA SEVKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKADVTFSDKLWIFSHLLAPHLAQV KQQPEEAAVILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTADDRFMSALPLFHSFG LTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAHPYDFHR LRYVVAGAEKLQDSTKQLWQEKFGLRVLEGYGVTECAPVVSINVPMAAKSGTVGRILPGM DARLLAVPGIEGGGRLQLKGPNIMSGYLRVENPGVLEVPTAENAQGEIERGWYDTGDIVR FDENGFVQIQGRAKRFAKIAGEMVSLEMVEQLALAVSADKMHATAIKSDASKGEALVLFT TDSELTREKLQQYARAHGVPELAVPRDIRHLKQLPLLGSGKPDFVTLKSWVDEPEKQHE >gi|283548476|gb|GG730301.1| GENE 134 144089 - 145282 1479 397 aa, chain + ## HITS:1 COG:ygeD KEGG:ns NR:ns ## COG: ygeD COG0477 # Protein_GI_number: 16130739 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 397 1 397 397 588 90.0 1e-168 MSESVHTNTSIWSKGMMSVIAAQFLSAFGDNALLFATLALLKEQFYPDWSQPILQMVFVG AYILFAPFVGQVADSFAKGRVMMFANVLKLLGAASICFGINPFLGYTLVGIGAAAYSPAK YGILGELTTGDKLVKANGLMEASTIAAILLGSVAGGVLADWHVIAALSACALAYAGAVAA NLFIPKLAAARPGQSWHLGKMTRSFFCAASSLWRNGETRFSLVGTSLFWGAGVTLRFLLV LWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVGVLFLS LQHALLPSYALLMLIGMLGGFFVVPLNALLQERGKQSVGAGNAIAVQNLGENSAMLLMLG IYSLAVLVGIPAVAIGLGFGALFALAIAALWIWQRRH >gi|283548476|gb|GG730301.1| GENE 135 145386 - 146426 1262 346 aa, chain - ## HITS:1 COG:tas KEGG:ns NR:ns ## COG: tas COG0667 # Protein_GI_number: 16130738 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 346 1 346 346 674 95.0 0 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVSQGINLIDVAEMYPVPPRPE TQGLTETYVGNWLAKHGSREKLIVASKVSGPARNNDSGIRPNQALDRKNIREALHDSLKR LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPVVSLLDTLDALAEFQRAGKIRYIGVSN ETAFGVMRYLHLADKHDLPRIATIQNPYSLLNRSYEVGLAEVSQYEGVELLAYSCLGFGT LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHNLDPAQMALAFVRRQP FVASTLLGATTMEQLKTNVASLHLELNEEVLAEIEAVHQVYTYPAP >gi|283548476|gb|GG730301.1| GENE 136 146533 - 146751 275 72 aa, chain - ## HITS:1 COG:no KEGG:G2583_3488 NR:ns ## KEGG: G2583_3488 # Name: ygdR # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 72 1 72 72 132 98.0 5e-30 MKKWAVLISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ INRDDVSQIIER >gi|283548476|gb|GG730301.1| GENE 137 146896 - 147609 979 237 aa, chain - ## HITS:1 COG:STM3006 KEGG:ns NR:ns ## COG: STM3006 COG0861 # Protein_GI_number: 16766308 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Salmonella typhimurium LT2 # 1 237 1 237 237 382 99.0 1e-106 MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMIMR LALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKT RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGEFVD RHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVEALNLLRNKKNPL >gi|283548476|gb|GG730301.1| GENE 138 147688 - 148380 900 230 aa, chain - ## HITS:1 COG:STM3005 KEGG:ns NR:ns ## COG: STM3005 COG3066 # Protein_GI_number: 16766307 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair protein # Organism: Salmonella typhimurium LT2 # 1 229 1 229 231 400 90.0 1e-111 MPELHPLLSPPDSEAQLLTQARQLAGYSLGELAAMAGLVTPKDLKRDKGWIGVLLEIWLG ASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTGNTGVTWETSHVRHKLKRV LWIPVEGERSIPLAERRVGSPLLWSPNEEEDQQLRLDWEELMDMIVLGHVERITARHGEV LQLRPKAANARALTEAIGANGEPILTLPRGFYLKKNFTRALLERHFLFQP >gi|283548476|gb|GG730301.1| GENE 139 149065 - 149595 202 176 aa, chain + ## HITS:1 COG:ECs3687 KEGG:ns NR:ns ## COG: ECs3687 COG0494 # Protein_GI_number: 15832941 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 176 1 176 176 327 95.0 9e-90 MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINAGETAEQAMYRELFEEVGL NRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSSDAEINMQTSSTPE FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMALQETTPKPQSAPAYRRKRG >gi|283548476|gb|GG730301.1| GENE 140 149608 - 151854 2353 748 aa, chain + ## HITS:1 COG:STM3003 KEGG:ns NR:ns ## COG: STM3003 COG3605 # Protein_GI_number: 16766305 # Func_class: T Signal transduction mechanisms # Function: Signal transduction protein containing GAF and PtsI domains # Organism: Salmonella typhimurium LT2 # 1 748 1 748 748 1397 96.0 0 MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCYYLMATRGLKK PRGRTVALAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIQRRQ LLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLNALFGQYRQTRIRALPAAPGV AIAEGWQDATLPLMEQVYQASTLDPVLERERLTGALEEAANEFRRYSKRFTAGAQKETAA IFDLYSHLLSDTRLRRELFAEVDNGSVAEWAVKTIIEKFAEQFAALSDNYLKERAGDLRA LGQRLLFHLDDSIQGPNAWPERFVLVADELSATTLAELPQDRLVGVVVRDGAANSHAAIM VRALGIPTVMGADIQPSVLHRRTLVVDGYRGEVLVDPEPVLVQEYQRLISEEIELSRLAE DDVNQPAQLKSGERVKVMLNAGLSPEHEEKLGSRIDGIGLYRTEIPFMLQSGFPSEEEQV AQYQGMLQMFNDKPVTLRTLDVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVR AMLRANAATGNLSILLPMVTSIDEVDEARRLIERAGREVEEMIGYAIPKPRIGIMLEVPS MVFMLPHLANRIDFISVGTNDLTQYILAVDRNNTRVASIYDSLHPGMLRALAMIAQEAEK SGIDLRLCGEMAGDPMCVAILIGLGFRHLSMNGRSVARVKYLLRHIDFGEAQTLAQRSLE AQMATEVRHQVAAFMERRGMGGLIRGGL >gi|283548476|gb|GG730301.1| GENE 141 152045 - 152920 1129 291 aa, chain + ## HITS:1 COG:ECs3685 KEGG:ns NR:ns ## COG: ECs3685 COG0682 # Protein_GI_number: 15832939 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Escherichia coli O157:H7 # 1 291 1 291 291 528 94.0 1e-150 MTSSYLHFPDFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRRANRPGSGWTKNEVENL LYAGFLGVFLGGRIGYVLFYNFPLFLDNPLYLFRVWDGGMSFHGGLIGVILVMVIFARRT KRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFKYAMLFPGSRTEDILLLQTN PQWQSIFDTYGSLPRHASQLYEMALEGVVLFIILNLYIRKPRPMGAVSGLFLIGYGAFRI IVEFFRQPDAQFTGTWVQYISMGQILSIPMIVAGIIMMVWAYRRSPQQHVS >gi|283548476|gb|GG730301.1| GENE 142 152948 - 153721 906 257 aa, chain + ## HITS:1 COG:ECs3684 KEGG:ns NR:ns ## COG: ECs3684 COG0207 # Protein_GI_number: 15832938 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Escherichia coli O157:H7 # 1 257 8 264 264 544 97.0 1e-155 MQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQEGFPLVTTKRCHLRSIIHELLWFLQGDT NVAYLHENNVSIWDEWADENGNLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRR IIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHM MAQQCDLDVGDFVWTGGDTHLYSNHMDQTHLQLSREPRALPKLVIKRKPESIFDYRFEDF EIEGYDPHPGIKAPVAI >gi|283548476|gb|GG730301.1| GENE 143 153905 - 154375 218 156 aa, chain + ## HITS:1 COG:ppdA KEGG:ns NR:ns ## COG: ppdA COG2165 # Protein_GI_number: 16130730 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Escherichia coli K12 # 1 155 1 155 156 214 69.0 6e-56 MNKQQGYTLLETLIAMLIIAALGASGLYGWQRWQQQQRLWHTACQVRDYLLQLREDANWR NRDHTISVIRDGASWCFVSSAASQDVCKPASPLVFTPLWDDVEMAEITPSLAFFGLRNTA WAGHIRLKNAAGEWRVVVSGWGRIRLCERDEARLCQ >gi|283548476|gb|GG730301.1| GENE 144 154414 - 154929 336 171 aa, chain + ## HITS:1 COG:STM2999 KEGG:ns NR:ns ## COG: STM2999 COG4795 # Protein_GI_number: 16766301 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulJ # Organism: Salmonella typhimurium LT2 # 1 171 17 187 187 266 71.0 2e-71 MAISSILLLSAARFLPALQREILRNTRQLALEDEIWQRVYTVAKHFQRAGYCRGTCVGEG LEISAKGDCVIARWDANSNGVWEMSPAKEADVIGFRLQDKVLETLRGATDCSGKGWEKMT DPASIQIEVFQVERRDIRGFSPLLTLRLRGVNNVEPQKVIEAVYSVTGFNL >gi|283548476|gb|GG730301.1| GENE 145 154926 - 155333 219 135 aa, chain + ## HITS:1 COG:no KEGG:SDY_3041 NR:ns ## KEGG: SDY_3041 # Name: ygdB # Def: hypothetical protein # Organism: S.dysenteriae # Pathway: not_defined # 1 135 1 135 135 147 68.0 1e-34 MNRERGVSSLAMVLLLLVLGSLLLQGVSRQEASFASRVATESRSLQRQAVVQSATEWGRM QAWDSQSIVQCRRYTLQDAAVCLRRLTDTSVLLIAHYEGVTLWRQGTVIDGNIEFSAHGW SDFCPLKALTLCQTP >gi|283548476|gb|GG730301.1| GENE 146 155231 - 155641 164 136 aa, chain + ## HITS:1 COG:ppdC KEGG:ns NR:ns ## COG: ppdC COG4967 # Protein_GI_number: 16130727 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilV # Organism: Escherichia coli K12 # 30 136 1 107 107 150 75.0 4e-37 MAPGDGYRWQYRIFGAWLERLLPVKGADVMSDSLNGQRGFSLPEVMLAMVLMIGIVTALS GHQRALMNSFIIRSQYQQLWRHAWQQTQLYPFSSPVNWQVNRMQTTGAGCVSISVKISSP LGRQGQMTRLHCPNRQ >gi|283548476|gb|GG730301.1| GENE 147 155654 - 159022 3573 1122 aa, chain + ## HITS:1 COG:STM2996 KEGG:ns NR:ns ## COG: STM2996 COG1330 # Protein_GI_number: 16766298 # Func_class: L Replication, recombination and repair # Function: Exonuclease V gamma subunit # Organism: Salmonella typhimurium LT2 # 1 1122 1 1122 1123 2057 90.0 0 MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLAQKFGIAANI DFPLPASFIWDMFVRVLPDIPKESAFSKQSMSWKLMTLLPQLLDNDDFALLRHYLTDDTD KRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGRLIDGLGESQVWQAPLWKALVEYTAELG QPRWHRANLYQRFIQTLESASECPPGLPSRVFICGISALPPVYLQALQALGKHIDIHLLF TNPCRYYWGDIKDPAWLAKLLARQRRHSFEERHMPLFRDSQKAEGLFNSDGEQDVGNPML ASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQLDILELESRAVAGVTLEEYSR SDNKRLLDANDTSVTFHVCHSPQREVEILHDRLLAMLEADPMLTPRDIIVMVADIDSYSP FIQAVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVPVLA ARFNIDEEGLRYLRLWVNESGIRWGIDDDNVRELELPPTGQHTWQFGLTRMLLGYAMESA QGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQERPLEEWLPVCRDMLNDFFL PDADTEAAMTLIEQQWQAIITEGLGAEYGDAVPLSLLRDELAQRLDQERISQRFLAGPVN ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPMRGDRSRRDDDRYLFLEAL ISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDESLTCDQSEARVKAHI TRLHTRMPFDAQNYQPGEQQSYAREWLPAASLSGKAHTDFVQPLPFEMPETLTLETLQRF WAHPVRAFFQMRLQVNFRSEESEIPETEPFVLEGLTRYQLNQQLLNTLVEENDAERLFRR FRAAGALPYGSFGEILWDTQRQEMQLLAERIIACRQPCQSMEIDLTCNGVQITGWLPQVQ EDGLLRWRPSLISIAQGVQLWLEHLVYCASGGTGESRLFLRKDGEWRFPPLEAEQALLYL SQLIEGYREGMSSPLLVLPESGGAWIKTCYDAANDAMLDDDDTLQKARSKFLQAYEGNMM VRGEGDDIWYQRLWRQLDAETLERIVSQSQRYLLPIFRFNQS >gi|283548476|gb|GG730301.1| GENE 148 159202 - 162090 2998 962 aa, chain + ## HITS:1 COG:ECs3678 KEGG:ns NR:ns ## COG: ECs3678 COG1025 # Protein_GI_number: 15832932 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Secreted/periplasmic Zn-dependent peptidases, insulinase-like # Organism: Escherichia coli O157:H7 # 1 962 1 962 962 1705 88.0 0 MPRSTWFSALLLFVALWVPVSQADTGWQPLAETIRKSDKDTRQYQAVRLDNGMVVLLVSD PQAVKSLSALVVPVGSLEDPDDHQGLAHYLEHMCLMGSKKYPQPDSLAEFLKMHGGSHNA STAPYRTAFYLEVENDALVGAVDRLADAIADPLLDKKYADRERNAVNSELTLARTRDGMR MAQVSAETINPAHPGSRFSGGNLETLSDKPGNPVVQALQKFHEKYYSANLMKAVIYSNKP LPELARIAADTFGRVPNRNIEKPEITVPVVTDAQKGIIIHYVPAMPRKVLRVEFRIDNNS AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGIRADSDPVVNGNSGVLAISATLTDK GLANRDEVVAAIFSYLNLLREKGVDKRYFNELAHVLDLDFRYPSITRDMDYVEWLADTMI RVPVAHTLDAVNIADQYDAQAIAQRLAMMTPQNARIWYISAKEPHNKIAYFVDAPYQVDK ISDKTFADWQQKAQGIALSLPELNPYIPDDFTLIKADKKYAHPELIVDEPHLRVVYAPSQ YFASEPKADVSVILRNPKAMDSARNQVLFALNDYLAGIALDQLSNQASVGGIGFSTNANN GLMLNANGYTQRLPQLFQALLSGYFSYTSTDEQLEQAKSWYAQMMDSAEKGKAYDQAIMP VQMLSQVPYFSRDERRKLLPSITLQEVMSYRDALKAGARPEFLVVGNMSKAQATAMAQDI QKQLGANGSQWCRNKEVVVDKKQSVIFEKAGSSTDSALAAVFVPTGYDEYTSSAYSAMLG QIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSSDKQPSYLWERYKAFFPTAE AKLRAMKPEEFTQIQQAIIAQMLQAPQTLGEEASQLSKDFDRGNMRFDSRDKIVAQIKLL TPQKLADFFHQAVVEPQGMAILSQVSGSQNGKAEYVRPEGWKVWQTVSALQQTLPLMSDK NE >gi|283548476|gb|GG730301.1| GENE 149 162083 - 165628 3644 1181 aa, chain + ## HITS:1 COG:recB KEGG:ns NR:ns ## COG: recB COG1074 # Protein_GI_number: 16130724 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Escherichia coli K12 # 1 1179 1 1179 1180 1984 86.0 0 MNDAAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL VVTFTEAATEELRGRIRSNIHELRIACLRETTDNPLYARLLDEIADKEQAAKWLLLAERQ MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLSRDIA QVIFETWKGPQALLRDIDRYLQGEAPVIKAPPPDDETLASRHEQILARINQIKQQWRNAV DGLDGLLETSGIDRRKFNRGNQGKWIEKISAWAQEETQSYQLPDALEKFSQRFLQERTKA GGVTPQHPLFVAIDELLDQPLTLRDLVITRALAEIRTAVAEEKRRRGELGFDDMLSRLDA ALRSESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQAETALLLIGDPKQAIY AFRGADIFTYMKARGEVSAHYTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIPFSPVKS ADKNQSLRFVLHGETQPAMTMWLMEGESCGVGDYQNYMAQVCATQIRDWLKAGHSGDAQL VSGKTSRPVRASDISVLVRSRQEAALVRDALTQLAIPSVYLSNRDSVFETLEAQELLWVL QAVMTPERENTLRSVLATSMMGLNAQDIEALNNDENAWDAVVEEFDGYRQIWHKRGVMPM LRALMTTRQIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQHILEPDS NASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNFRVQDRAFYHDRSSFEAVLDL SDARESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR LVQKGEPMDAAGLRGAIEALCCDDIACLTPNQPDGERWQVAQAASGELSARMLQRTPGDS WRVTSYSGLQQRGHGIAQDLIPRLDIDAAGVGEVIAESGLTSHQFPRGASPGTFLHSLFE DLDFTQPVDPHWVEEKLALGGYEAHWEPVLTQWLNTVLQAPLNETGVSLSQLSAREKQVE MEFYLPISQPLMASRLDALIRQYDPLSAGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLD YKSNWLGEDSAAYTQQAMASAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIY LFLRGVDGDDPQQGIYATRPERELIALMDEMFAGAALEEMS >gi|283548476|gb|GG730301.1| GENE 150 165625 - 167454 1464 609 aa, chain + ## HITS:1 COG:recD KEGG:ns NR:ns ## COG: recD COG0507 # Protein_GI_number: 16130723 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Escherichia coli K12 # 1 605 1 605 608 982 84.0 0 MTIQKRLLEAVEQKQLRPLDAQFALAVAGNDNPAVALAAALLSREAGEGHVCLPLSRLSL REDAPPLLSAWLADIGEPEDWAECLLASGAVSRGEQPTPLVLYGDRLYLNRMWHNERAVA RFFSEVNHAIEVDEQRLTDTLEALFPSSEGVNWQKVAAAVALTRRISVISGGPGTGKTTT VAKLLAALIQMADGERCRIRLAAPTGKAAARLTASLGAALRELPLTDEQKKRIPDDASTL HRLLGAQPGSQRLRHHAGNPLHVDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ LASVEAGAVLGDICAFVNDGFTPERARQLSRLTGSVIPAGTGTQAAALRDSLCLLQKSYR FGSDSGIGQLAAAINRGDKTAVKTVFQQGFGDIEKRTLHSGEDYAAMLDEALAGYGHYLD LLREGAAPDVIIQAFNEYQLLCALREGPFGVGGLNERIEQVMAQKRKIHRSMHSRWYEGR PVMIARNDSSLGLFNGDIGIALDRGQGLRVWFALPDGSIKSVQPSRLPEHETTWAMTVHK SQGSEFDHAALILPSQHSPVVTRELVYTAVTRARRRLSLYADERILSGAIVMRTERRSGL SALFNDGMM >gi|283548476|gb|GG730301.1| GENE 151 167564 - 168895 1298 443 aa, chain - ## HITS:1 COG:ECs3675_1 KEGG:ns NR:ns ## COG: ECs3675_1 COG0548 # Protein_GI_number: 15832929 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Escherichia coli O157:H7 # 1 291 1 291 291 565 96.0 1e-161 MVKERKTELVQGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLV VVYGARPQIDANLAAHHHEPVYHKNTRVTDAKTLELVKQAAGLLQLDITARLSMSLNNTP LQGAHINVVSGNFIISQPLGVDDGVDYCHSGRIRRIDEEAIHRQLDSGAIVLMGPVAVSV TGESFNLTSEEVATQLAIKLKAEKMIGFCSSQGVTNDEGDIISELFPNEAQARVESQEEK GDYSSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRR ATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNLTIACAALYPFPEERI GEMACVAVHPDYRSSSRGEVLLERIAAQARQMGLSKLFVLTTRSIHWFQERGFTPVDIDL LPESKKEMYNYQRRSKVLMADLG >gi|283548476|gb|GG730301.1| GENE 152 169184 - 170380 1248 398 aa, chain + ## HITS:1 COG:ECs3674 KEGG:ns NR:ns ## COG: ECs3674 COG0860 # Protein_GI_number: 15832928 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Escherichia coli O157:H7 # 1 398 50 447 447 731 96.0 0 MWLLSVSQVGLAAVSQVVAVRIWPASSYTRVTVESNRLLKYKQFALSNPERVVVDIEGVN LNSVLKGIGAQIRPDDPYIKSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLV MDLYPANAQDVQDPLLALLEDYNKGDLDKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGE DSGAVGKYKTREKDVVLQIARRLRALIENEGNMKVFMTRNEDIFIPLKVRVAKAQKQRAD LFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHT MFDMVQSLTIADSLKFGKAVLNKLGKINNLHKNQVEQAGFAVLKAPDIPSILVETAFISN VEEERKLKTATFQQEVAESILAGIKAYFADGATLARRG >gi|283548476|gb|GG730301.1| GENE 153 171079 - 172176 992 365 aa, chain + ## HITS:1 COG:ECs3673 KEGG:ns NR:ns ## COG: ECs3673 COG2821 # Protein_GI_number: 15832927 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase # Organism: Escherichia coli O157:H7 # 1 365 1 365 365 705 94.0 0 MKGRWAKYLLAGAVVAMLAACSSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFA EQVNQIRSASPRLYGNQSNVYNAIQQWLRAGGDTRSMRQFGIDAWQMEGADNYGNVQFTG YYTPVIQARHTRQGEFQYPIYRMPPKRGRLPTRAEIYAGALSDNYILAYSNSLMDNFIMD VQGSGYIDFGDGSPLNFFSYSGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSE AEVRELLEQNPSFVFFKPQSFAPVKGASAVPLIGRASVASDRSIIPAGTTLLAEVPLLDN NGKFTGQYELRLMVALDVGGAIKGQHFDIYQGIGADAGHRAGWYNHYGRVWVLKTAANAG NVFSG >gi|283548476|gb|GG730301.1| GENE 154 172285 - 173091 917 268 aa, chain + ## HITS:1 COG:ygdL KEGG:ns NR:ns ## COG: ygdL COG1179 # Protein_GI_number: 16130719 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Escherichia coli K12 # 1 267 1 267 268 496 95.0 1e-140 MSVVISDAWRQRFGGTARLYGENALQLFAGSHVCVVGIGGVGSWAAEALARTGIGAITLI DMDDVCVTNTNRQIHALRDNVGLAKADVMAERIRQINPECRVNVVDDFVTPDNVAEYMNA GFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAK LRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKATAEGPKRMDCASGFGA ATMVTATFGFVAVSHALKKMMAKAARQP >gi|283548476|gb|GG730301.1| GENE 155 173170 - 173616 380 148 aa, chain - ## HITS:1 COG:ECs3671 KEGG:ns NR:ns ## COG: ECs3671 COG2166 # Protein_GI_number: 15832925 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Escherichia coli O157:H7 # 1 146 1 146 147 244 86.0 4e-65 MTGPLFAGHPFGTTVTEETLRNTFVPLTQWEDKYRQLILLGKQLPALPDALKAQAKEIAG CENRVWLGYTQHENGTLHFFGDSEGRIVRGLLAVLLTAVEGKTAAELLAHSPMALFDELG LRAQLSVSRSQGLHALNEAILAAARQAG >gi|283548476|gb|GG730301.1| GENE 156 173616 - 174821 1209 401 aa, chain - ## HITS:1 COG:ECs3670 KEGG:ns NR:ns ## COG: ECs3670 COG0520 # Protein_GI_number: 15832924 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Escherichia coli O157:H7 # 1 401 1 401 401 728 91.0 0 MNAFNPAQFRAQFPALNDAGVYLDSAATALKPQAVIEATRQFYSLSAGNVHRSQFAEAQR LTERYEAAREKAARLINAPDDKAIVWTRGTTEAINMVAQSYARPRLQPGDEIIVSVAEHH ANLVPWLMVAEQTGAKVVKLPLNAHLLPDVERLVELITPRSRILALGQMSNVTGGCPDLV RAITLAHAAGMVVMVDGAQGIVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKPELLE AMSPWLGGGKMISEVSFDGFTTQAAPWKLEAGTPNVAGVIGLSAALEWLADIDVAQAENW SRGLATLAEDALAKRPGFRSFRCQDSSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQ PLLAELGVSGTLRASFAPYNTQSDVDALVAAVDRALEILVD >gi|283548476|gb|GG730301.1| GENE 157 175014 - 175241 246 75 aa, chain + ## HITS:1 COG:no KEGG:ECO111_3534 NR:ns ## KEGG: ECO111_3534 # Name: ygdI # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 74 1 74 75 125 97.0 4e-28 MKKTAAIISACMLTFALSACSGSNYVMHTNDGRSIVSDGKPQTDNETGMISYKDANGNKQ QINRTDVKEMVELDN >gi|283548476|gb|GG730301.1| GENE 158 175605 - 176522 636 305 aa, chain + ## HITS:1 COG:ECs3668 KEGG:ns NR:ns ## COG: ECs3668 COG0583 # Protein_GI_number: 15832922 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 305 1 305 305 598 98.0 1e-171 MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL LLTEEGQSYFLDIKEIFSQLTDATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAY PGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGDKPL KTPDDLAKHTLLHDASRRDWQAYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGIALAN NVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAATEQEKFR FRYEQ >gi|283548476|gb|GG730301.1| GENE 159 176541 - 176936 471 131 aa, chain + ## HITS:1 COG:ECs3667 KEGG:ns NR:ns ## COG: ECs3667 COG2363 # Protein_GI_number: 15832921 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Escherichia coli O157:H7 # 1 131 1 131 131 199 96.0 1e-51 MTSRFMLIFAAVSGFIFVALGAFGAHVLSKTLGVVEMGWIQTGLEYQAFHTLAIFGLAVA MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGFSFLAGWALMLVGA IRLKRKGVSHE >gi|283548476|gb|GG730301.1| GENE 160 176929 - 178029 1266 366 aa, chain + ## HITS:1 COG:STM2980 KEGG:ns NR:ns ## COG: STM2980 COG2933 # Protein_GI_number: 16766284 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Salmonella typhimurium LT2 # 1 366 1 366 366 732 93.0 0 MNKVVLLCRPGFEKECAAEITDKAGRREIFGFARVKDNAGYVIFECYQQDDAEKLVKELP FSSLIFARQMFVVGELLQYLPPEDRITPIVGMLQGVVEKGGDLRVEVADTNESKELVKFC RKFTVPLRAALREAGVLAKYETPKRPVVHVFFIAPGCCYTGYSWPDNNSPFYMGIPRLKF PAEAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVYSVD NGPMAQSLMDTGQVTWLREDGFKYRPNRNNISWMVCDMVEKPAKVAALMAQWLVNGWCRE TIFNLKLPMKKRYEEVSQNLAYIQAQLDEHGVNAQIQARQLYHDREEVTVHVRRLWAAVG GRRDER >gi|283548476|gb|GG730301.1| GENE 161 178074 - 178778 718 234 aa, chain - ## HITS:1 COG:STM2979 KEGG:ns NR:ns ## COG: STM2979 COG1349 # Protein_GI_number: 16766283 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 232 1 232 236 412 90.0 1e-115 MKAARQQAIVDLLTHHQSLTTEALSLQLNVSKETIRRDLGELQTQGKVLRNHGRAKAIHR ENQDSGDPFHIRLKSHYAHKADIAREALTWIEEGMVIALDASSTCWYLARQLPDIDIHVF TNSQPICQELAKREQIQLISSGGRLERKYGCYVNPSLISQLKSLDIDLFIFSCEGIDSDG ALWDSNATNADFKSILLKRASQSLLLIDKSKFNRSGEARIGHLDDVTHIVSDKQ >gi|283548476|gb|GG730301.1| GENE 162 178836 - 179258 456 140 aa, chain - ## HITS:1 COG:ECs3664 KEGG:ns NR:ns ## COG: ECs3664 COG4154 # Protein_GI_number: 15832918 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose dissimilation pathway protein FucU # Organism: Escherichia coli O157:H7 # 1 140 1 140 140 253 93.0 1e-67 MLKTISPLISPDLLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL FELDSYAPPLVMMAAVEGDALDPDVEARYRQALSLQTPCPDITRIDRYAFYERAQKAFAI VITGERAKYGNILLKKGVTP >gi|283548476|gb|GG730301.1| GENE 163 179260 - 180678 1373 472 aa, chain - ## HITS:1 COG:fucK KEGG:ns NR:ns ## COG: fucK COG1070 # Protein_GI_number: 16130710 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 468 11 478 482 824 85.0 0 MKQDVILVLDCGATNVRAIAVDRQGKIIARASTPNASDIAAENSAWHQWSLEAILQRFAD CCQRLSPQLANCHVRGIAVTTFGVDGALVDKNGKQLYPVISWKCPRTAAVMENIHRYMTP QQLQEISGVGAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFTTDITMAG TSQMLDIQQRDFSHDILQATGIPRRLFPRLVEAGEQIGTLQPEAASQLGLTAGIPVISAG HDTQFALFGAGAQQDEPVLSSGTWEILMVRSAQVNTSLLSHYAGSTCELDSQAGLYNPGM QWLASGVLEWVRKLLWTAETPWQTLIDEAQAIPAGAEGVKMQCDLLACQNAGWQGVTLNT TRGHFYRAALEGLTEQLQRNLQTLEKIGHFQASELLLVGGGSRNALWNQIKANVLGIPVK VLDDAETTVAGAAMFAWSGIGEFTSAEQARVQVRYQYRYFYPQTEPELTGVE >gi|283548476|gb|GG730301.1| GENE 164 180798 - 182573 1928 591 aa, chain - ## HITS:1 COG:STM2976 KEGG:ns NR:ns ## COG: STM2976 COG2407 # Protein_GI_number: 16766280 # Func_class: G Carbohydrate transport and metabolism # Function: L-fucose isomerase and related proteins # Organism: Salmonella typhimurium LT2 # 1 591 1 591 591 1177 95.0 0 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALITEKLRHACGAQIECVIADT CIAGMAESAACEEKFSSQNVGVTITVTPCWCYGSETIDMDPMRPKAIWGFNGTERPGAVY LAAALAAHSQKGLPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKGKSYLSV GGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDETELEMALAWADKNFRY GEDQNAQQYKRNAEQSRAVLKESLLMAMCIRDMMQGNKKLADKGLVEESLGYNAIAAGFQ GQRHWTDQYPNGDTAEALLNSSFDWNGVREPFVVATENDSLNGVAMLFGHQLTGTAQVFA DVRTYWSPEAVERVTGKPLTGLAEHGIIHLINSGSAALDGSCKQRDGAGKPTMKPHWEIS QKEADDCLAATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMSRINIIKGLGPVLQIAEGWS VELPKDMHDQLDARTNSTWPTTWFAPRLTGKGPFSDVYSVMANWGANHGVLTIGHVGADF ITLAAMLRIPVCMHNVEDEKIYRPSAWAAHGMDSEGQDYRACQNYGPLYKR >gi|283548476|gb|GG730301.1| GENE 165 182605 - 183579 929 324 aa, chain - ## HITS:1 COG:fucP KEGG:ns NR:ns ## COG: fucP COG0738 # Protein_GI_number: 16130708 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Escherichia coli K12 # 1 324 115 438 438 576 93.0 1e-164 MNYTLFLIGLFIIAAGLGCLETAANPFVTVLGPESGGHFRLNLAQTFNSFGAIIAVVFGQ SLILSNVPHQSQDVLDKMAPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMFTKFPAL QSDDHSDSTQSSFSASLSRLVRIRHWRWAVLAQFCYVGAQTACWSYLIRYAIEEIPGMTP GFAANYLTGTMVCFFIGRFSGTWLISRFAPHKVLAAYALLAMVLCLISAFTGGHIGLLAL TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTA ELVPAVCFAIIFIFARFRSQTAAN >gi|283548476|gb|GG730301.1| GENE 166 184479 - 185126 795 215 aa, chain + ## HITS:1 COG:STM2974 KEGG:ns NR:ns ## COG: STM2974 COG0235 # Protein_GI_number: 16766279 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Salmonella typhimurium LT2 # 1 215 1 215 215 409 93.0 1e-114 MERNTLARQIINTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYDKLTEAHIVYINA QGQHEEGKLPSSEWRFHMAAYQTRPDAQAVVHNHAVHCTAVSILNRPIPAIHYMIAAAGG NSIPCAPYATFGTRELSEHVAVALKNRKATLLQHHGLIACEENLEKALWLAHEVEVLAQL YLSTLAIIDPVPVLDDEAIAIVLEKFKTYGLRIEE >gi|283548476|gb|GG730301.1| GENE 167 185138 - 186286 1486 382 aa, chain + ## HITS:1 COG:STM2973 KEGG:ns NR:ns ## COG: STM2973 COG1454 # Protein_GI_number: 16766278 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Salmonella typhimurium LT2 # 1 382 1 382 382 677 91.0 0 MANRMILNETAWFGRGAVGALTDEVIRRGYRKALIVTDENLVQCGVVGKVTSHMDAAGLA WEIYSGVIPNPTIAVVQEGLGVFQQSGADYLIAIGGGSPQDTCKAIGIIHNNPEFADVRS LEGLSPTRVASVPVMAIPTTAGTAAEVTINYVITDEENRRKFVCVDPHDIPQVAFIDADM MDGMPAALKAATGVDALTHAIEGYITRAAWALTDALHIKAIEIIAGALRGSVAGDSEAGE AMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMHYNAEFTGEKFR DIARAMGVKVEGLTLAEARKAAVDAVFALNRDVGIPLHLRDVGVRKEDIPALAQAAFDDV CTGGNPREASLGDIVELYHTAW >gi|283548476|gb|GG730301.1| GENE 168 186371 - 187126 632 251 aa, chain - ## HITS:1 COG:ECs3658 KEGG:ns NR:ns ## COG: ECs3658 COG0258 # Protein_GI_number: 15832912 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Escherichia coli O157:H7 # 1 251 31 281 281 473 90.0 1e-133 MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIVHSQPTHAVAVFDDEARNSGWRH QRLPDYKAGRPPMPDELHQEMPALRAAFEQRGVCCWVSSGNEADDLAATLAVKVCQAGHQ ATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFGVQPQQLPDYWGLAGIGSSKVP GVAGIGPKSATQLLTQFPTLEALYEHLDKVPEKWRKKLEEHREMAFLCRDIARLQTDLHI DGNLQQLRLAR >gi|283548476|gb|GG730301.1| GENE 169 187294 - 188661 1513 455 aa, chain - ## HITS:1 COG:STM2971 KEGG:ns NR:ns ## COG: STM2971 COG1760 # Protein_GI_number: 16766276 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Salmonella typhimurium LT2 # 1 455 1 455 455 869 96.0 0 MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARGILTDVTRVVVDVYGSLSLTGKGH HTDIAIIMGLAGNLPDTVDIDAIPAFIQDVNTHGRLLLANGQHEVEFPVDKCMNFHTDNL SLHENGMRITALAGEKAIYSQTYYSIGGGFIVDEEHFGLPNSAPVNVPYPYKSAADLQRH CQETGLSLSGLMMQNELALHSKEELEQHFANVWEVMRSGIERGITTEGVLPGKLRVPRRA AALRRMLVSSDKTTTDPMAVVDWINMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY DKFIREVNANSLARYMLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGG SPTQVCIAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAVNAARMALRRTSEPRVC LDKVIETMYETGKDMNAKYRETSRGGLAMKIVTCD >gi|283548476|gb|GG730301.1| GENE 170 188715 - 190004 1702 429 aa, chain - ## HITS:1 COG:STM2970 KEGG:ns NR:ns ## COG: STM2970 COG0814 # Protein_GI_number: 16766275 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 429 1 429 429 716 96.0 0 MENTQTSTIVTGQTRSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGMIPLIIMAILA FPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGVGAGKLITLLYFFAIYPILLVYSVAI TNTVESFLTHQLAITPPPRAILSLILIVGMMTIVRFGEQMIVKAMSILVFPFVAALMLLA LYLIPQWSGAALETLSFDSAASTGNGLWMTLWLAIPVMVFSFNHSPIISSFAVAKREEYG DDAEKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNISILSYLANHFNAPI IAWMAPIIAMIAITKSFLGHYLGAREGFNGMVIKSLRGKGKTIEINKLNKITALFMLVTT WIVATLNPSILGMIETLGGPIIAMILFLMPMYAIQKVPAMRKYSGHISNVFVVIMGLIAI SAISYSLFS >gi|283548476|gb|GG730301.1| GENE 171 190567 - 191901 1481 444 aa, chain - ## HITS:1 COG:STM2969 KEGG:ns NR:ns ## COG: STM2969 COG1611 # Protein_GI_number: 16766274 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Salmonella typhimurium LT2 # 1 444 11 454 454 891 97.0 0 MDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFDINVLRRER GVKLELINPPEDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHLDLESSVHITN LVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGTQLGLRELNICTGCGPGAM EAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAH GIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFIVHTLGEN ARRHYRIIIDDAAEVARLMKKAMPLVKENRRDTGDAYSFNWSIRIAPDLQMPFEPSHENM ANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEQFGPYKIHGDREMMRRMDDLL QGFVAQHRMKLPGSAYIPCYEICA >gi|283548476|gb|GG730301.1| GENE 172 192045 - 192893 841 282 aa, chain - ## HITS:1 COG:STM2968_2 KEGG:ns NR:ns ## COG: STM2968_2 COG0780 # Protein_GI_number: 16766273 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Salmonella typhimurium LT2 # 138 282 1 145 145 286 91.0 2e-77 MSSYENHRALDGLTLGKSTDYRDNYDAGLLQGVPRSLNRDPLDLKADNLPFHGADIWTLY ELSWLNANGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFDSWDAVRQTLENDLR ACAQGDVSVALYRLDELEGQPIAHFNGTCIDNQDIVIDNYQFSTEYLENAVSGEKAVEET LVSHLLKSNCLITHQPDWGSIQIQYRGRKIDREKLLRYLVSFRHHNEFHEQCVERIFNDI LRFCQPEKLSVYARYTRRGGLDINPWRTNTDFTPATGRLVRQ >gi|283548476|gb|GG730301.1| GENE 173 192962 - 193507 366 181 aa, chain + ## HITS:1 COG:no KEGG:CKO_04149 NR:ns ## KEGG: CKO_04149 # Name: not_defined # Def: SecY interacting protein Syd # Organism: C.koseri # Pathway: not_defined # 1 181 1 181 181 330 90.0 2e-89 MDELTAQALTAFTTRYCDAWHDKNNSWPLSEELYGVPSPCIISSTNDAVYWQPQPFVGEK NVNAVERAFDIVIQPAVHAFYTTQFAGDMHAQFADEKLTLLQTWSEDDFRRVQENLIGHL VTQKRLKLSPTLFIATQDNELDVISVCNLSGEVCKETLGTRQRTVLAPSLAEFLTQLKPA L >gi|283548476|gb|GG730301.1| GENE 174 194140 - 194469 414 109 aa, chain + ## HITS:1 COG:STM2965 KEGG:ns NR:ns ## COG: STM2965 COG3098 # Protein_GI_number: 16766271 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 109 1 109 109 158 81.0 2e-39 MTTHDRVRQQLHALEALLREHHHWRMDEPAEHLFTSTQPFCMDTMEPVEWLQWVLIPRMH TLLDNAQPLPQAFAVAPYYEMALAADHPQRDILLTTLQELDALFISDNA >gi|283548476|gb|GG730301.1| GENE 175 194469 - 195251 192 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 3 219 82 276 287 78 27 4e-13 MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV LLMGLSSEAGRLLAQQFEHHQIQKRYHAIVRGWLMDDAVLDYPLVEELDKIADKFAREDK GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELDPKTGRKHQLRRHLAHLRHPIIGDSK HGDLRQNRSAAEHFGCQRLMLHASQLELIHPFTGEPLVIRAGLDDVWMQALSQFGWRGLL PENERVEFSGLSGQDELIDS >gi|283548476|gb|GG730301.1| GENE 176 195271 - 195720 613 149 aa, chain + ## HITS:1 COG:ECs3650 KEGG:ns NR:ns ## COG: ECs3650 COG0716 # Protein_GI_number: 15832904 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 148 1 148 149 275 92.0 2e-74 MAEIGIFVGTMYGNALLVAEEAEAILTAQGHKATVFEDPELSDWQAYQEKYVLVVTSTTG QGDLPDSIVPLFQGIKDNLGYQPNLHYGVIALGDSSYVNFCNGGKQFDALLQEQSAHRVG EMLLIDASEHPEPESESNPWVENWGTLLK >gi|283548476|gb|GG730301.1| GENE 177 196064 - 197422 1660 452 aa, chain + ## HITS:1 COG:ygcZ KEGG:ns NR:ns ## COG: ygcZ COG0477 # Protein_GI_number: 16130696 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 450 1 450 450 792 96.0 0 MSSLSQAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDAVGMGYV FSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTL RFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTHEVGWS HVFFFMGGLGIVISLIWLKVIHEPNQHPGVNQKELEYIAEGGALINMDQAAAKAKVPFSV KWGQIKQLLGSRMMIGIYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAIC GFAGGVLGGIISDWLMRRTGSLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMALAF FGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIY VGVHALVAVVSYLVLVGDIKRIELKTVAGQPS >gi|283548476|gb|GG730301.1| GENE 178 197419 - 198759 1640 446 aa, chain + ## HITS:1 COG:STM2961 KEGG:ns NR:ns ## COG: STM2961 COG4948 # Protein_GI_number: 16766267 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Salmonella typhimurium LT2 # 1 446 1 446 446 888 97.0 0 MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGNTGVGEAPGGEVI YQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALL DLLGKALNVPVCELLGPGKQRDAVTVLGYLFYVGDRTKTDLPYLESTPGNHEWYRLRHQQ ALNSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWL LDEAIALCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHA VMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGK PTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQIQKAHEAYKALPGGA RNDAGPMQYLIPGWTFDRKRPVFGRH >gi|283548476|gb|GG730301.1| GENE 179 198781 - 200121 1884 446 aa, chain + ## HITS:1 COG:STM2960 KEGG:ns NR:ns ## COG: STM2960 COG4948 # Protein_GI_number: 16766266 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Salmonella typhimurium LT2 # 1 446 1 446 446 906 97.0 0 MSAQFTTPVVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK IRQTLEDAIPLVVGKTLGEYKNVLNAVRNRFADRDAGGRGLQTFDLRTTIHVVTGIEAAM LDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEKCDWYRLRHE EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAW SLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGH TLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPG KITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVELDMEQVMKAHELYQQHGLG ARDDAMGMQYLIPNWTFDNKRPCMVR >gi|283548476|gb|GG730301.1| GENE 180 200205 - 201347 1256 380 aa, chain + ## HITS:1 COG:STM2959 KEGG:ns NR:ns ## COG: STM2959 COG1929 # Protein_GI_number: 16766265 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Salmonella typhimurium LT2 # 1 380 1 380 380 582 85.0 1e-166 MKIVIAPDSYKESLSALEVATAIELGFREIWPDADYVKIPVADGGEGTVEAMVAATQGHL VHVDVTGPLGSTIRAFYGLSGDERSAFIEMAAASGLEQVPARLRDPLKTTSWGTGELIRH ALDAGVEHIIIGIGGSATNDGGAGMVQALGAKLLDAHNHEISYGAMGLEALTRIDISQLD KRLATCRIEVACDVTNPLTGKEGASAVFGPQKGATAEMIPRLDRALTHYAQLIARDLDVN VLELAGGGAAGGMGAALYAFCGAQLRRGIETVTDALRLDDCVADADLVVTGEGRIDSQTI HGKVPVGVAKVAKRYNKPVIGIAGSLTADVGVVHDHGLDAVFSVIYTICTLDEALKNASE NVRMTARNVAATLKAGQQLR >gi|283548476|gb|GG730301.1| GENE 181 202071 - 204827 2587 918 aa, chain - ## HITS:1 COG:STM2958_1 KEGG:ns NR:ns ## COG: STM2958_1 COG0642 # Protein_GI_number: 16766264 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 525 1 525 525 991 96.0 0 MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGM NLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSEMQLATGSPFPRKL SVTRLGDIMILRTPIISESYSPDESAVSDAKNTQNMLGYVALELDLKSVRLQQYKEIFIS SVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGI NSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANM SHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLI LESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNA IKFTEGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHG GTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHISLDLNPNVLVDRSTSRCLAGKRLA YVEPNATAAQCTLDILSETPLEVIYSPSFSGLPKDHYDILLLGIPVTFREPLTMQHERLA SAAAMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHSADQPL PDESKIAMTVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDRARQMQFDLILMDIQ MPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNL LLRYKPGASTSLRALAVEPVEPVVNPNTTLDWQLALRQAAGKNDLARDMLQMLLDFLPEV RNKIEEQLVGENPEGLVDMIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEELEPEFL ELLDEMDNVAREAKRMLG >gi|283548476|gb|GG730301.1| GENE 182 204885 - 206183 716 432 aa, chain + ## HITS:1 COG:STM2957 KEGG:ns NR:ns ## COG: STM2957 COG2265 # Protein_GI_number: 16766263 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Salmonella typhimurium LT2 # 1 432 1 431 431 759 84.0 0 MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPELLPQESAEVVITEDKKQ FARAQVKRRLNDSPQREVPRCPHFGVCGGCQQQHASISLQQRSKSAALSRLMKYEVSDVI ADTPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDIIDVKQCPVLVPRLEALLPHIRACL ESLQGLRHLGHVELVQAGSGTLMILRHTAPLSVQDKEKLECFSHSQGLSLFLAPQSEILE SISEESPWYDSNGLRLSFSPRDFIQVNEGVNQQMVARALEWLDVQPGDRVLDLFCGMGNF TLPLARRAASVVGVEGVPALVEKARENALNNGLHNVTFFHENLEEDVTRQPWAKNGFDKV LLDPARAGAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRQLAMLDMFPHT GHLESMVLFERV >gi|283548476|gb|GG730301.1| GENE 183 206284 - 208518 2417 744 aa, chain + ## HITS:1 COG:STM2956 KEGG:ns NR:ns ## COG: STM2956 COG0317 # Protein_GI_number: 16766262 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Salmonella typhimurium LT2 # 1 743 1 743 744 1466 96.0 0 MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCQQQTQGHPDADLLLWRGV EMVEILSMLSMDIDTLRAAMLFPLADANVVSEDVLRESVGKSIVHLIHGVRDMAAIRQLK ATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTN IYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRSEM KTEGVKAEVYGRPKHIYSIWRKMQKKQLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTIEIQIRTKQMHEDAELGVAAHWKYKEG TASGAARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPA GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNL GYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKYLLPRYSFNELE ELLAAIGGGDIRLNQMVNFLQAQFNKPSAAEQDAAALKQLQQKTQAPQSRRKDDGRVVVE GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGES YSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ VLGRVLGKLNQVPDVIDARRLHGN >gi|283548476|gb|GG730301.1| GENE 184 208592 - 209383 885 263 aa, chain + ## HITS:1 COG:ECs3641 KEGG:ns NR:ns ## COG: ECs3641 COG1694 # Protein_GI_number: 15832895 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 263 1 263 263 457 94.0 1e-128 MNQIDRLLGIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELG DLLFQVVFYAQMAQEEGRFNFEDICAAISDKLERRHPHVFADVSASNSAEVLTRWEQIKS EERAEKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWKTLGPVVDKVYEEIDEVMFEA KQAVVDQAKLEEEMGDLLFATVNMARHLGTKAETALQKANEKFERRFREVERIVAARGLE MTGVDLETMEEVWQQVKRQEIDL >gi|283548476|gb|GG730301.1| GENE 185 209608 - 211245 1646 545 aa, chain + ## HITS:1 COG:STM2953 KEGG:ns NR:ns ## COG: STM2953 COG0504 # Protein_GI_number: 16766259 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Salmonella typhimurium LT2 # 1 545 1 545 545 1080 97.0 0 MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTMMKLDPYINVDPGTMSPIQHGEV FVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHIT NAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHTLFMHLTLVPYL AAAGEVKTKPTQHSVKELLSIGIQPDILVCRSDRAIPANERAKIALFCNVPEKAVISMKD VDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIE LPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKGLDAILIPGGFGYRGVEG KIATARFARENNIPYLGICLGMQVALIEFARNVVGMDNANSTEFVPDCKYPVVALITEWR DEDGNVEVRTEKSDLGGTMRLGAQQCQLSDESLVRQLYGTPTIVERHRHRYEVNNMLLKQ IEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQ KRQAK >gi|283548476|gb|GG730301.1| GENE 186 211332 - 212630 1441 432 aa, chain + ## HITS:1 COG:ECs3639 KEGG:ns NR:ns ## COG: ECs3639 COG0148 # Protein_GI_number: 15832893 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Escherichia coli O157:H7 # 1 432 1 432 432 746 97.0 0 MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFM GKGVLKAVAAVNGPIAQALLGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAK AAAAAKGLPLYAHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTLK EAVRMGSEVFHNLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKD ITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDG FAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIVNSILIKFNQIGSLTETLAAIKMAK DAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEQA PYNGRKEIKGQA >gi|283548476|gb|GG730301.1| GENE 187 212686 - 213510 758 274 aa, chain - ## HITS:1 COG:VC1775 KEGG:ns NR:ns ## COG: VC1775 COG1737 # Protein_GI_number: 15641778 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Vibrio cholerae # 1 273 1 276 278 204 43.0 2e-52 MSENENLLLRLRQGIDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCR TLGCKGYNEFKMALALDLQQGQPIEHSGDEIDNVVSESVQALQDTAKLLDRTLLEAAALA LHQAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKDTLVVAISS SGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGV MLLVELLTTSLIGLDEKYSDVSQKTASATLPLLL >gi|283548476|gb|GG730301.1| GENE 188 213637 - 215232 1507 531 aa, chain + ## HITS:1 COG:SA0233_1 KEGG:ns NR:ns ## COG: SA0233_1 COG1263 # Protein_GI_number: 15925945 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 27 458 5 435 437 545 68.0 1e-155 MVKIFITNRGDEKMMQMFSGASSGAWFEKAQRFGKSFMLPIAVLPAAGLLLGIGGALSNP NTLTAYPFLDVDWLQAIFTIMTSAGSIVFANLAVLFAVGVAVGLAKTDKGTAGLAALLAF LVMNATINALLTLNGTLAHENPGAVGQGMTLGIQTLETGVFGGVVIGLVTCALHNRFNKV SLPQFLGFFSGSRFVPIISSLAAIAVGAIMTVVWPHFQKLIFGLGGLVDATGYLGTLLYG FILRMLGPLGLHHIFYLPFWTTALGGSEIVNGQLVEGTQRIFFAQLADPNTQQFYEGTSR FMSGRFITMMFGLLGACLAMYHTAKPENKKLVAGLLLSAALTSFLTGITEPIEFSFLFVA PVLYVIHAFFDGLAFMIAHILHITIGQTFSGGLIDFLLFGVLQGEAKTNWMYVPMVGVPW FFLYYFTFRYLINRFGWLTPGRENVTMTESSLPQSERAAAAIAGLGGKENLEEVDCCATR LRVTVKESSKVDEAALKATGARGVIIRGNGVQVIYGPHVTIIKNEVEEILS >gi|283548476|gb|GG730301.1| GENE 189 215232 - 215921 780 229 aa, chain + ## HITS:1 COG:SA0307 KEGG:ns NR:ns ## COG: SA0307 COG3010 # Protein_GI_number: 15926020 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Staphylococcus aureus N315 # 12 227 6 220 222 254 63.0 1e-67 MKTVLDSLKGKLIVSCQALENEPLHSSFIMSRMALAAAQGGAVGIRANSVVDIRAIKESV SLPVIGIIKRDYPGSDVFITATLQEVDELMTVEPEIIALDATARPRPGGQTLEELVTQIR ARYPSVLLMADIATVDEAVTAERLGFDCVGTTLYGYTADTAGHVLAENDCGFLHEVLAAV SIPVVAEGNVDTPQRAARCLALGAHTVVVGGAITRPQQITARFVAAIAS >gi|283548476|gb|GG730301.1| GENE 190 215993 - 216664 213 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] # 5 222 20 224 225 86 30 1e-15 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAK TKESDKWGAASSEDLLAVIQRQGYTARHVVITGGEPCIHDLMPLTDLLEKNGFSCQIETS GTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD DKPRIIALQPISQKEDATRLCIDTCIACNWRLSMQTHKYLNIA >gi|283548476|gb|GG730301.1| GENE 191 216702 - 218180 1313 492 aa, chain - ## HITS:1 COG:ygcE KEGG:ns NR:ns ## COG: ygcE COG1070 # Protein_GI_number: 16130683 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Escherichia coli K12 # 1 492 1 492 492 964 91.0 0 MSKKYIIGIDGGSQSTKVVMYDLQGNVVCEGKGLLQPMHTPDADTAEHPDDDLWTSLCFA GKDLMNQFAGHKEDIVGIGLGSIRCCRALLKADGTPAEPLISWQDARVTRPYEHTNPDVA WVTSFSGYLSHRLTGEFKDNIANYFGQWPVDYKTWAWSDDDEVMKKFNIPRHMLFDVQMP GTILGHLTEQAALATGFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGK QLPKDPVAYWPIMSSIPETLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQGLSPEDLL NKKASVVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNN YDNMCNEMNHFAKHIIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGL GLYPSYETAIDNMVRVKDVFMPVEQNASRYEALNKGIFRELTQHTDVILKKSYQVTHGNL DNVDAIQSWSNA >gi|283548476|gb|GG730301.1| GENE 192 218207 - 219505 1372 432 aa, chain - ## HITS:1 COG:yqcE KEGG:ns NR:ns ## COG: yqcE COG0477 # Protein_GI_number: 16130682 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 419 1 419 425 701 91.0 0 MQQTSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAII LYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVS IKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWAFSRFAPDDSNSLKTVIIIYSVV YILLGILCWFFVSDAPAHSNAAKEEKKSFQLRDILAVLRISTTWYCSMVIFGVFTIYAIL SYSTNYLTEMYGMSLVAASYMGIVINKIFRAVCGPLGGIITTYSKVKSPTRVIQLLSIVG VLALIALLATNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPNYIMGTTVGICS VIGFLPDVFVYPIVGHWQDTLPAAQAYRNMWLMGLVALCMVILFTFLLFRKIRSADTTPE NKTALAAETAGE >gi|283548476|gb|GG730301.1| GENE 193 219951 - 220736 177 261 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 16 256 1 238 242 72 26 2e-11 MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANLFIPSFVKDNGETKEI IEKQGVEVEFMQVDITEKGAPEKIIAACCKRFGTVDILVNNAGICKLNKVLDFGRADWDP MIDVNLTAAFELSYEAAKIMIPQNSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAY CDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA SQASNYVNGHLLVVDGGYLVR >gi|283548476|gb|GG730301.1| GENE 194 220847 - 222301 1752 484 aa, chain + ## HITS:1 COG:ECs3629 KEGG:ns NR:ns ## COG: ECs3629 COG0277 # Protein_GI_number: 15832883 # Func_class: C Energy production and conversion # Function: FAD/FMN-containing dehydrogenases # Organism: Escherichia coli O157:H7 # 1 484 1 484 484 957 92.0 0 MSLSREAIVDQLKEIVGCDRVITDETVLKRNSIDRFRKYADIHGVFTLPLPAAVVKLGST DQVSNVLAFMNQNKINGVPRTGASATEGGLETVVENSVVLDGAGMNQILNIDIENMQATA QCGVPLEVLENALRAKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA VLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLYYGYVLDD MKVGFEILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRLAKATGEG IAEVVARYPQCQRVDSKLIENWFNHLNWGPEKVAAERVQILKTGNMGFTTEVSGCWSCIH QIYESVIQRIRTEFPHADDITMLGGHSSHSYINGTNMYFVYDYNVVGCKPEEEIDKYHNP LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWPLLEGLKKQFDPNGIMNAGTIY PIEK >gi|283548476|gb|GG730301.1| GENE 195 222362 - 223711 1286 449 aa, chain + ## HITS:1 COG:ygcS KEGG:ns NR:ns ## COG: ygcS COG0477 # Protein_GI_number: 16130678 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 449 25 469 469 684 89.0 0 MNTSPVRMDDLPLNGFHCRIAALTFGAHLVDGYVLGVIGYAIIQLTPAMHLTPFMAGMIG GAALLGLFIGSLILGWVSDHIGRQKIFNFSFVLITVASFLQFFATTPEQLIGLRILIGIG LGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASLAGHHFITENPDAWRWLLAS SALPALLITLLRWGTPESPRWLMRQGRFAEAHAVVQRCFGMHVQLGDEVIKETNKHIRTL FSSRYWRRTAFNSIFFVCLVIPWFVIYTWLPTIAETIGLEDALTASLLLNALLIVGALLG LVLTHLLAHRHFLLGSFLLLAATLIVMACLPPGSHWTLLLFVFFSTTISAVSNLVGILPA ESFPTDIRSLGVGFATAMSRLGAAISTGLLPWALAQWGMTVTLLLLAGVLLIGFVVTWLW APETKALPLVAAGSGDHRQGGTNEHSVGV >gi|283548476|gb|GG730301.1| GENE 196 223689 - 224471 634 260 aa, chain + ## HITS:1 COG:ECs3626 KEGG:ns NR:ns ## COG: ECs3626 COG2086 # Protein_GI_number: 15832880 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Escherichia coli O157:H7 # 1 260 3 261 261 340 71.0 2e-93 MNILLAFKPEPDASMLAEKDWQTAARDTCGPDVSLLRCAIGADEQAAAALLLAQRGAGCE MTLTALSIGDERALHWLRYFAALGFERQVLLEAAGDLRFAPSFIAGQLADWQRSHAAELI VTGCQSSEGQNGQTPFLLAEMLNWPCFTQVERFTLEPPFVVVEQRTTSGIRRCRVRLPAV IAVRQCGEVAQPVPGMRQRLAAAKAEVVRRAVTAEATPAVQCLRLTRPEQRRRAVIIEGA TAQEKARTLWENHLRQRMQP >gi|283548476|gb|GG730301.1| GENE 197 224468 - 225322 634 284 aa, chain + ## HITS:1 COG:ygcQ KEGG:ns NR:ns ## COG: ygcQ COG2025 # Protein_GI_number: 16130676 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Escherichia coli K12 # 1 278 12 288 297 311 60.0 8e-85 MKIAMVMAAGESAAMSHWLATASLADAELERWIIDGEAEVAQQLLEALVAQWRQTPVDML IFPAGILGDELATRLAWRLQGCSVCQVLAVNTPEGRVTKSHWGNALIATLEVAARPLCLS LARQPGVHTSIDLPVEMTTRHIAPAALPDWLISVESVETSGAHPLLEAKHVLVVGQGGEG VDADHIAALAHGLGAEAGYSRARVMNGGYDAERLIGISGHLLAPDVCIVAGASGAAALMA GVRDSRFIVAVNRDASAPVFTQADVGIVDDWPAVLEALAACADA >gi|283548476|gb|GG730301.1| GENE 198 225399 - 225974 701 191 aa, chain - ## HITS:1 COG:ygcP KEGG:ns NR:ns ## COG: ygcP COG1954 # Protein_GI_number: 16130675 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Escherichia coli K12 # 1 190 1 190 191 363 96.0 1e-101 MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIH VDLLEGASNKEVVIQFLKLVTEADGIISTKAPMLKAARAEGFFCIHRLFIVDSISFHNID KQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAMKAGVAALSTTN TTVWKLAKQLN >gi|283548476|gb|GG730301.1| GENE 199 225996 - 226256 138 86 aa, chain - ## HITS:1 COG:ygcO KEGG:ns NR:ns ## COG: ygcO COG2440 # Protein_GI_number: 16130674 # Func_class: C Energy production and conversion # Function: Ferredoxin-like protein # Organism: Escherichia coli K12 # 1 86 13 98 98 128 70.0 3e-30 MSVAHNVWRPADSSHIVPSASPTPEIAELLIQSCPAGLFSRTAEGELRVDYRGCLECGTC RLLCDEATLKEWRYPDSGFGITLRFG >gi|283548476|gb|GG730301.1| GENE 200 226247 - 227545 958 432 aa, chain - ## HITS:1 COG:ygcN KEGG:ns NR:ns ## COG: ygcN COG0644 # Protein_GI_number: 16130673 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 3 432 4 433 433 655 76.0 0 MRSGYLGRNMTDDFDIIIIGAGIAGTACALRCARAGLSVLLLERGEFPGSKNLSGGRLYC HPLAELLPHFQQSAPLERRITQESLTLLTADGATTYSSLQPGGDSWSVLRARFDPWFVSQ AESAGVQCITGITVEALYRENGRVCGVICANETLRARYVVLAEGANSELAERHGLLARPS PSSMALGIKAVLALEQNTLEDRFRLEGNEGAALLFTGGVCGDLPGGAFLYTNQDTLSFGI VCPLSSLGKSPVPAAELLEHLQSHPALRPLLRGGELLEYGAHLVPEGGLHSMPVQYAGEG WLLVGDALRTCINTGFTVRGMDMALIGAQAAAQTLIRACQQSAPQNLFPQYHRDIERSVL WESLQRYQHVPALLQRAGWYHRWPALMDDISRELWQQGERPVPPLRQIVWRHLRRHGLRH LAGDLLRSLRCL >gi|283548476|gb|GG730301.1| GENE 201 227599 - 227961 516 120 aa, chain - ## HITS:1 COG:STM2949 KEGG:ns NR:ns ## COG: STM2949 COG0720 # Protein_GI_number: 16766255 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Salmonella typhimurium LT2 # 1 120 1 120 120 250 97.0 6e-67 MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFAELKAA FKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE >gi|283548476|gb|GG730301.1| GENE 202 228268 - 230067 1953 599 aa, chain + ## HITS:1 COG:STM2948 KEGG:ns NR:ns ## COG: STM2948 COG0369 # Protein_GI_number: 16766254 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Salmonella typhimurium LT2 # 1 599 1 599 599 1079 88.0 0 MTTQAPPSALLPLNPEQLARLQAATTDFTPAQLAWVSGYFWGVLNQQPGATAAAPAPVAE MPGITLISASQTGNARRVAEALRDDLIAAQLNVTLINAGDYKFKQIANEKLLIVVASTQG EGEPAEEAVALHKFLFSKKAPKLDNTAFAVFALGDTSYEFFCQAGKDFDAKLAELGGERL LDRVDADVEYQAAAAQWRARLVDVLKARAPAAPSVQVAASGAVNEVHTSPYTKEAPLTAT LAVNQKITGRDSQKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDE PVTVEGKTLPLAEALEWHFELTVNTANIVENYATLTRSSSLLPLVGDKAQLQHYAATTPI VDMVRFSPAQLDAQALVDLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGG ASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAE GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKVYVQDKLRQQGAELW CWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDIEAADEFLSELRIERRYQRDVY >gi|283548476|gb|GG730301.1| GENE 203 230067 - 231779 2128 570 aa, chain + ## HITS:1 COG:ECs3618 KEGG:ns NR:ns ## COG: ECs3618 COG0155 # Protein_GI_number: 15832872 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Escherichia coli O157:H7 # 1 570 1 570 570 1146 95.0 0 MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQ DDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAADNTIYGSIRLTNRQTF QFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEH LLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAI AENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRT DRKNAKTKYTLERVGVETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDNKWHLTL FIENGRILDYPDRPLKTGLLEISKIHKGEFRITANQNLIIAGVPESDKAKIEEIAQKSGL MNAVTPQRENSMACVSFPTCPLAMAEAERFLPTFIDSIDTLMAKHNLSDENIVMRVTGCP NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMFKENITEPEILASLDELIGRWAK EREAGEGFGDFTVRAGIIRPVLDPARDFWE >gi|283548476|gb|GG730301.1| GENE 204 231863 - 232597 1063 244 aa, chain + ## HITS:1 COG:STM2946 KEGG:ns NR:ns ## COG: STM2946 COG0175 # Protein_GI_number: 16766252 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 244 1 244 244 470 95.0 1e-133 MSQLDLNALNALPKVERVLALAETNSQLETLSAEARVAWALENLPGEYVLSSSFGIQAAV SLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLQVYRAKESAAWQEARYGKL WEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVL PIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECG LHEG >gi|283548476|gb|GG730301.1| GENE 205 232763 - 235441 1650 892 aa, chain + ## HITS:1 COG:STM2944 KEGG:ns NR:ns ## COG: STM2944 COG1203 # Protein_GI_number: 16766250 # Func_class: R General function prediction only # Function: Predicted helicases # Organism: Salmonella typhimurium LT2 # 6 890 1 885 887 1415 75.0 0 MNGESVEFFNYWGKSRQGDENGGDDYHLLCWHALDVAAIGYRMVKDNIYCIDNYLSVLGL NNIKRAAQFFAWLLCWHDIGKFSHSFQQLYCHPDLPCGNDAQRHYEKISHPTLGYWLWNN YLSECPELFPSSALSARKLKRAIALWMPLTTGHHGRPPDVIRDINNFRQQDKEAARDFLQ AIKPLFPLAEIPEYWDEDDGIELINHLSWFISAAVVLADWTGSATRFFPRVAEKMPVERY WALACQQAQAAISVFPPSADIASFTGISTLFPFIQHPTPLQQKSLELDISADGAQLFILE DVTGAGKTEAALILAHRLMAAGKARGLYFGLPTMATANAMFDRMSESWLALYQPDSRPSL VLAHSARGLMDKFNQSVWSGDLVGSEEPDDKQPASQGCAAWFADSNKKALLADVGVGTLD QAMMAVMPFKHNNLRMLGLSNKILLADEIHAYDHYMSRILESLIEKQASDGNITILLSAT LSQQQRDRLVAAFAKGAKSRVEAPLLGYDDYPWLTQVTASQVVSRHVETRQEVERSVNVG WLDSEQACIERIEQSVRNGKCIAWIRNSVDDAIRIYRQLFSRGIVSPENLTLFHSRFAFH DRQRIETQTLNVFGKKSAGQRAGKVIIATQVIEQSLDIDVDEMISDLAPVDLLIQRAGRL QRHIRDRHGLVKTAGKDERDAPELLILAPEWDDAPREDWLSSAMRNSAYVYPDHGRLWLT QRVLRQQGEIRMPQSARLLIESVYGDDVAMPEGFVKTEQLQEGKYYCDRAFAAQNILNFA AGYSPESSDFLPDKLSTRLAEESITLWLARIIDGVVMPYAPGEHAWEMSAMRVRQGWWNK HRADFTLLDGKPLQQWCVEQHQNQEFAVVIVVSEVENSGYSACEGLIGMMEV >gi|283548476|gb|GG730301.1| GENE 206 235453 - 237009 1136 518 aa, chain + ## HITS:1 COG:no KEGG:STM2943 NR:ns ## KEGG: STM2943 # Name: not_defined # Def: cytoplasmic protein # Organism: S.typhimurium # Pathway: not_defined # 1 500 1 500 518 827 80.0 0 MNNFSLLTTPWLPVRFNDGSVGKLAPVNLADENVVDIAAVRADLQGAAWQFLLGLLQCSI APKNSARWEDIWLDGLSAEALQKALAPLEPAFQFGDQTPAFMQDFEPLSGETVSIASLLP EIPGAQTTKFNKDHFVKRGVTERLCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTL IELQEYQGNRQTPLWRKLWLNVMPQDSAGMPVPNQCDESVFPWLAPTRTSEQANAVTTPE QVNRLQAYWGMPRRIRLDFNTTHSGRCDLCEAQSDELLSGMTVKNYGVNYAGWTHPLTPY RLALKGDSERYSVKPQPGGLIWRDWLGLNQEGTSENNTEYPALVVKTTAARSLKDTKVGL WGFGYDFDNMKARCWYEHHFPLLLTDSIVPDLRQAAQTASRNLGLLRSALKEAWFADAKG ARGDFSFIDIDFWHLTQGRFLALVHDLESGDSAKERLSQWQTNIWLFTRRYFDDHVFTNP YEGSDLKRIMLARKKYFTKSAEKQSAKAARAKKQEAAE >gi|283548476|gb|GG730301.1| GENE 207 237006 - 237569 380 187 aa, chain + ## HITS:1 COG:no KEGG:SC2874 NR:ns ## KEGG: SC2874 # Name: tnpA # Def: putative transposase # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 182 1 182 182 247 73.0 2e-64 MSIVKDDHKVTLRRWHEELQETRGLRASLRRSKTVNEACLSEGFRSLLMQTHTLWKRENE EWRFTALAIAAALAAHVKSIDERQKFAAQLGQMTGSNPVMSELRFSRLSAVKTPDELLRQ LLRAVRLLNGAVNLPSLAEDVFHWCRENDEQLNHLRRQQRPTEFIRIRWALEYYQAGEVD TDNNKDQ >gi|283548476|gb|GG730301.1| GENE 208 237580 - 238635 1238 351 aa, chain + ## HITS:1 COG:no KEGG:ROD_30481 NR:ns ## KEGG: ROD_30481 # Name: not_defined # Def: CRISPR-associated protein # Organism: C.rodentium # Pathway: not_defined # 1 351 13 363 363 605 88.0 1e-171 MTTFIQLHLLTAYPAANLNRDDTGSPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAG NIGIRTGRIAREAANILIEKGIEPKKAVEWVESIASCFGKVKADKKAKDILTNAETEQLV HISPAEFDAVKALAHRLAEEKRAPKEDELALLRRDRMAVDIAMFGRMLANKPEFNVEAAC QVAHAFGVSETIVEDDFFTAVDDLRAASDDAGAGHLGETGFGSALFYTYICIDKDLLVKN LNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWTLAEKGTDQPRSLAAAFYNPI NGTNQLDVAVNRITELRENMNKVYEQQTESTGFDVMNKKGSIKDVLDFICA >gi|283548476|gb|GG730301.1| GENE 209 238681 - 239391 463 236 aa, chain + ## HITS:1 COG:no KEGG:EcE24377A_3059 NR:ns ## KEGG: EcE24377A_3059 # Name: cas5e # Def: CRISPR-associated Cas5 family protein # Organism: E.coli_E24377A # Pathway: not_defined # 1 236 13 248 248 366 80.0 1e-100 MASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEDARLNDFNQHYAFLLCASKEPR WARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMMGVSATPDAPYS LEQLRDALQHPVFPLYLGRKSHPLGLPLAPLLLEGRAADALREAYRQYQRNFTDMKLSLA RLQNECWWEGEHDGLTANKILRRRDNPLNRQRWLFGERTVNQGPWLTKEEVCTSQE >gi|283548476|gb|GG730301.1| GENE 210 239457 - 240023 237 188 aa, chain + ## HITS:1 COG:no KEGG:SC2871 NR:ns ## KEGG: SC2871 # Name: ygcH # Def: putative cytoplasmic protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 186 29 214 216 305 81.0 7e-82 MHQWLWELFPGGKERQFLYRREELQGAFRFFVLSQERPADSVIFDVLCRPFSPALVAGQT LRFTLRANPTVCKAGKRHDLLMEAKRQLNAQQGSRDVWSYQQQAAIEWLSHQGEQHGFSL REVNVDAYRQQQIRREKSRQMIQFSSVDYSGLLVVSDPTTFLQRMALGYGKSRAFGCGMM MIKPGDSE >gi|283548476|gb|GG730301.1| GENE 211 240020 - 240940 560 306 aa, chain + ## HITS:1 COG:STM2938 KEGG:ns NR:ns ## COG: STM2938 COG1518 # Protein_GI_number: 16766244 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Salmonella typhimurium LT2 # 1 306 1 306 306 587 96.0 1e-167 MTFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRV SHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMY ELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRNYDPKDWEKGDVVNQCI SAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAAHHP AEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIDPPQPAPDMLPPAIPEPKPLGDG GHRGHG >gi|283548476|gb|GG730301.1| GENE 212 240946 - 241233 111 95 aa, chain + ## HITS:1 COG:no KEGG:SG2840 NR:ns ## KEGG: SG2840 # Name: ygbF # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 95 4 98 98 174 96.0 1e-42 MVVVVTENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQVTQLGGVGNVVMAWAT NTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ >gi|283548476|gb|GG730301.1| GENE 213 241386 - 241910 -117 174 aa, chain - ## HITS:1 COG:no KEGG:Ctu_10520 NR:ns ## KEGG: Ctu_10520 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 45 174 1 130 135 97 51.0 2e-19 MPVYPRWRGEHIRCGRKRRRARGLSPLARGTPCAHFRKRKGRRFIPAGAGNTCVKPSRSP GVTVYPRWRGEHHIKHALACGFFGLSPLARGTPGKHKQAHARRRFIPAGAGNTINLDTGV IPAAVYPRWRGEHGTERKEKRKPAGLSPLARGTLLNRVTELVWRRFIPAGAGNT >gi|283548476|gb|GG730301.1| GENE 214 242029 - 242481 -302 150 aa, chain - ## HITS:1 COG:no KEGG:Ctu_10250 NR:ns ## KEGG: Ctu_10250 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 6 141 39 174 197 91 47.0 1e-17 MFWEYAAAPGLSPLARGTPLIRLPKKPFLRFIPAGAGNTFAGFSGLPGSPVYPRWRGEHS PCPRRINLSNGLSPLARGTRWREPQHIAPTRFIPAGAGNTMKRLTRTYRQPVYPRWRGEH SVCGQCSNTAPGLSPLARGTLADRQNLAPS >gi|283548476|gb|GG730301.1| GENE 215 244198 - 245337 686 379 aa, chain - ## HITS:1 COG:PH1043 KEGG:ns NR:ns ## COG: PH1043 COG1473 # Protein_GI_number: 14590880 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Pyrococcus horikoshii # 4 376 10 380 387 229 34.0 7e-60 MNVQDYQDYGIRMRRHFHQHPELGRKECETRAYSIHQFEQMGFSITDCFYTGFYADLHID DKFPTIAFRADMDALPATEKPGEVVTSQNPGAAHLCGHDLHMAVALTAAKIMSEHRSALK ANIRFLFQPSEEMFRGGAKGMIAEGCMEGVDRVYGLHNDPQIDCGQIALRPGIMSSNGDQ FKLSIEGKSAHASAPHLGLDALSEAVRLLNEFRSIITDHVDPNKAALISTCMLKAGEAPN ILARNAELQGSIRSFDKSVHQTLTRHFMEEIQESRRRGYNVDLDIMGYPAINNHPAETQH LIETAQEYLGTENVLTDRPPMVGSEDFSFFLEEKPGAFFFLGSGDHSKGINNPLHSNPFI ANENCILIGATLFARLAGL >gi|283548476|gb|GG730301.1| GENE 216 245357 - 245815 418 152 aa, chain - ## HITS:1 COG:no KEGG:Entcl_0867 NR:ns ## KEGG: Entcl_0867 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 152 1 152 152 187 74.0 9e-47 MTLKEHLSSTRIIIPCIILVLVAQWVGKGMSPIAAIPGAVMMLAIILLSLQIKAWLPRLP LPAFAWATLIALLLSIPYSPVSDIFMRYTNRIDFLATTTPLLAFAGLSVGNSLDKLKSLS WRIVIISLLVFTTAFFGAAFVAQFILKAQGII >gi|283548476|gb|GG730301.1| GENE 217 245836 - 246516 427 226 aa, chain - ## HITS:1 COG:no KEGG:Entcl_0866 NR:ns ## KEGG: Entcl_0866 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 221 44 264 274 294 84.0 2e-78 MLYAVILGVVITPDLLGKYIKPLGKFVSRKEISITGNVVMLALLPLGVKYGTLVGPNIKE VIHAGPALILQEIGNLGSVLIAMPVALLLGMRREAIGACSSISREPSLGVIGEKYGIESP EGTGVLGTYLVGSVIGTVYFGVISPLGLQVGLNPLSLAVACGLGSGSMMAAASASLAAAV PTMSTQILAFAATSNMLAAFTGMYALIFLALPLSNLMYRVLPHKAH >gi|283548476|gb|GG730301.1| GENE 218 246941 - 247870 502 309 aa, chain + ## HITS:1 COG:STM3245 KEGG:ns NR:ns ## COG: STM3245 COG0583 # Protein_GI_number: 16766544 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 4 296 6 298 312 305 48.0 6e-83 MHALPKTQHFIVFQEVVRCGSLRAAARSLGLTQPSVTKTIHDIENYFGVELIARNNTGID LTDAGKTLLTHSRTILKDLTLAVNDMRRLLSDPITEVSFGFSSLIGFTVIPDIVKQFNKL YPTARITMQEAQLSSLLPALREGRLDFAIGTVTPDMPVQNLAVYPLFNAEFSFIAAQGHP LAACETLNALQHARWVLPQTDMGYYQALSELLEHNVVNTDRVVRTDSVITIFNLVAHAGF ITVLARAMSSPFDGGQFAELPVREMLPQARYALVCSRNKRQGVGVEALLSIIRKYNWSHF PGMNTQGIA >gi|283548476|gb|GG730301.1| GENE 219 247898 - 248737 882 279 aa, chain - ## HITS:1 COG:ECs3607 KEGG:ns NR:ns ## COG: ECs3607 COG2234 # Protein_GI_number: 15832861 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Escherichia coli O157:H7 # 1 277 68 344 345 502 88.0 1e-142 MGYSSDIRAFNSRYIYTAKDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAAQSDA DSDANLGGLTLQGIDDNAAGVGVMLELAERLKNVSTQYGIRFIATSGEEEGKLGAENILK RMSAAEKKNTLLVINLDNLIVGDKLYFNSGKRTPEAVRKLTRDRALAIARSRGIIASTNP GLNKDYPKGTGCCNDAEVFDNAGIAVLSVEATNWSLGKKDGYQQRAKSPSFPDGNSWHDV RLDNQQHIDKALPGRIEHRSRDVVRIMLPLVKELAKAQP >gi|283548476|gb|GG730301.1| GENE 220 249193 - 250101 1144 302 aa, chain + ## HITS:1 COG:cysD KEGG:ns NR:ns ## COG: cysD COG0175 # Protein_GI_number: 16130659 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Escherichia coli K12 # 1 302 1 302 302 619 98.0 1e-177 MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMMYSIGKDSSVMLHLARKAFYPGTLPFPL LHVDTGWKFSEMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLK QALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGES IRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDDRIDLQPGEVIK KRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQG YF >gi|283548476|gb|GG730301.1| GENE 221 250111 - 251538 1813 475 aa, chain + ## HITS:1 COG:cysN KEGG:ns NR:ns ## COG: cysN COG2895 # Protein_GI_number: 16130658 # Func_class: P Inorganic ion transport and metabolism # Function: GTPases - Sulfate adenylate transferase subunit 1 # Organism: Escherichia coli K12 # 1 475 1 475 475 870 91.0 0 MNTTLAQQIANEGGVEAWMVAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLS SLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQY TRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDFSEETF NRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSVSMPWYSGPTLLEVLETVEIQRI VDTQPMRFPVQYVNRPNLDFRGYAGTLASGSVQVGQRVKVLPSGVESSVARIVTFDGDLQ QAHAGEAITLVLKDEIDISRGDLLLDAAEALPAVQSAAVDVVWMAEQPLSPGQTYDIKVA GKKTRARVDSVQYQVDINNLTQREVDALPLNGIGLVNLTFDEPLVLDTYQQNPVTGGLII IDRLTNVTVGAGLVREPIVQEQAAAFQFSAFELELNALVRRHFPHWGARDLLGGK >gi|283548476|gb|GG730301.1| GENE 222 251538 - 252143 553 201 aa, chain + ## HITS:1 COG:ECs3604 KEGG:ns NR:ns ## COG: ECs3604 COG0529 # Protein_GI_number: 15832858 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Escherichia coli O157:H7 # 1 201 1 201 201 377 94.0 1e-104 MALHDENVVWHAHPVTPQQREQRHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTY LLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVDAGLVVLTAFISPHRAERKMVRE RVGAGRFIEVFVDTPLATCEARDPKGLYKKARAGELRNFTGIDSVYEAPESPEIHLDGEQ LVTNLVPQLLDLLRQEDIIRS >gi|283548476|gb|GG730301.1| GENE 223 252191 - 252514 507 107 aa, chain + ## HITS:1 COG:no KEGG:ROD_30601 NR:ns ## KEGG: ROD_30601 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 107 1 107 107 143 78.0 2e-33 MRNSHNITITESDTFAADDETTWSLPGAVVGFVAWLLALGFPCLMYGPNTLFFFLYTWPF FLALLPVAIVAGIALNSLLKGRLLLSITCTLLVVGAMFGALFMWLLG >gi|283548476|gb|GG730301.1| GENE 224 252729 - 253040 182 103 aa, chain + ## HITS:1 COG:STM2931 KEGG:ns NR:ns ## COG: STM2931 COG2919 # Protein_GI_number: 16766237 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Salmonella typhimurium LT2 # 16 103 16 103 103 164 96.0 4e-41 MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDL NGGQEAIEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR >gi|283548476|gb|GG730301.1| GENE 225 253059 - 253769 300 236 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 10 227 6 223 234 120 37 1e-25 MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVDALLAHPRVTRVVIAISP GDSRFAQLPLAAHPQITVVDGGNERADSVLAGLQAAGEAHWVLVHDAARPCLHQDDLARL LAISETSRTGGILAAPVRDTMKRAEPGRTDIAHTVERTDLWHALTPQFFPRELLHDCLTR ALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLSRTIHLEKA >gi|283548476|gb|GG730301.1| GENE 226 253769 - 254248 627 159 aa, chain + ## HITS:1 COG:ECs3600 KEGG:ns NR:ns ## COG: ECs3600 COG0245 # Protein_GI_number: 15832854 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 288 99.0 3e-78 MRIGHGFDVHAFGGVGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK >gi|283548476|gb|GG730301.1| GENE 227 254245 - 255294 890 349 aa, chain + ## HITS:1 COG:STM2928 KEGG:ns NR:ns ## COG: STM2928 COG0585 # Protein_GI_number: 16766234 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 349 1 349 349 626 89.0 1e-179 MTAFENLTYLHGKPLGHGVLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGNAMPDLSKFELEGCKVLEYARHKRK LRLGALKGNDFTLVLREVSDRADVEARLQAMSERGVPNYFGAQRFGIGGSNLQGALRWAQ SDAPVRDRNKRSFWLSAARSALFNQIVSERLKKTDFNQVVDGDALQLSGRGSWFVATREE QTELQRRVDDKELMITAALPGSGEWGTQRDALAFEKGAVADETALQSLLLREKVEASRRA MLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAYIAE >gi|283548476|gb|GG730301.1| GENE 228 255275 - 256036 711 253 aa, chain + ## HITS:1 COG:ECs3598 KEGG:ns NR:ns ## COG: ECs3598 COG0496 # Protein_GI_number: 15832852 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Escherichia coli O157:H7 # 1 253 1 253 253 474 93.0 1e-134 MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTYDNGD IAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPA LAVSLDGHKHYDTAAAVTCRILRALSREPLRTGRILNINVPDIPLDQIKGIRVTRCGSRH PADQVIPQQDPRGNTLYWIGPPGEKCDAGPDTDFAAVDEGYVSITPLHVDLTAYGAHEVV ANWLDSVGVDTQW >gi|283548476|gb|GG730301.1| GENE 229 256030 - 256656 588 208 aa, chain + ## HITS:1 COG:STM2926 KEGG:ns NR:ns ## COG: STM2926 COG2518 # Protein_GI_number: 16766232 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-L-isoaspartate carboxylmethyltransferase # Organism: Salmonella typhimurium LT2 # 1 208 1 208 208 385 96.0 1e-107 MVSRRVHTLLEQLRAQGIRDEQVLDALAAVPREKFIDEAFEHKAWDNIALPIGQGQTISQ PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQWQARRRLKQL DLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMMQLDEGGILVLPVGDEHQFLK RVRRRGGEFIIDTVEAVRFVPLVKGELA >gi|283548476|gb|GG730301.1| GENE 230 256775 - 257902 469 375 aa, chain + ## HITS:1 COG:STM2925 KEGG:ns NR:ns ## COG: STM2925 COG0739 # Protein_GI_number: 16766231 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Salmonella typhimurium LT2 # 1 375 1 377 377 551 88.0 1e-157 MSAGSHKFTVRRIAALSLVSLWLAGCSNTSNPPAPVSSVDGGASANTSSGMLITPPPKMG STSTVQQTPQIQPVQRPTTQPTQIQPVTEQPVQMENGRIVYNRKYGNIPKGSYTGGSTYT VKKGDTLFYIAWITGNDFRDLAQRNNIPAPYGLNVGQTLQVGNASGTPITGGNAITQADA AQQGVVTNPAQNSTVAVASKPTITYSEDSGEQSANKMLPNNKPAGTVVTAPVTAPAASTT ESTASSTSTSAPISTWLWPTDGKVIENFAATEGGNKGIDIAGSKGQAIVATADGRVVYAG NALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEIKAGQKIATMGSTGTSSTRLHFEIR YKGKSVNPLRYLPQR >gi|283548476|gb|GG730301.1| GENE 231 257965 - 258957 1256 330 aa, chain + ## HITS:1 COG:STM2924 KEGG:ns NR:ns ## COG: STM2924 COG0568 # Protein_GI_number: 16766230 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Salmonella typhimurium LT2 # 1 330 1 330 330 575 100.0 1e-164 MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEELLSQGATQRVLDATQL YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE RVRQIQVEGLRRLREILQTQGLNIEALFRE >gi|283548476|gb|GG730301.1| GENE 232 259092 - 259496 347 134 aa, chain - ## HITS:1 COG:Z4048 KEGG:ns NR:ns ## COG: Z4048 COG1846 # Protein_GI_number: 15803257 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 EDL933 # 1 133 12 144 146 194 80.0 3e-50 MPLRNKAFHLLRQLFQQHTARWQFELPELTKPQYAVMRAIAEQPGIEQVALMEAAVCTKA TLAEMLSRMEKRDLVRREHDPADKRRRFVYLTMQGEALLASATPLGDSVDDEFLGRLSEE EREQFTHLVRKMMG >gi|283548476|gb|GG730301.1| GENE 233 259655 - 260248 683 197 aa, chain + ## HITS:1 COG:ECs3593 KEGG:ns NR:ns ## COG: ECs3593 COG0163 # Protein_GI_number: 15832847 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase # Organism: Escherichia coli O157:H7 # 1 197 1 197 197 355 89.0 3e-98 MRLIVGMTGATGAPLGVSLLQALREMPEVETHLVLSKWAKTTIALETPYSVHDVSALADY CHNPADQAATISSGSFRTDGMIIIPCSMKTLAGIRAGYAEGLVGRAADVVLKEGRKLVLV PREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPQTVDDITQHIVARVLDQFGLEHPNA RRWQGLRQAQNFAQENE >gi|283548476|gb|GG730301.1| GENE 234 260248 - 261675 1877 475 aa, chain + ## HITS:1 COG:ECs3592 KEGG:ns NR:ns ## COG: ECs3592 COG0043 # Protein_GI_number: 15832846 # Func_class: H Coenzyme transport and metabolism # Function: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases # Organism: Escherichia coli O157:H7 # 1 475 1 475 475 944 97.0 0 MAFDDLRSFLQALDDQGQLLKISEEVDAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA RVAMNTIGSWQNHAISMGLPINTPVRKQIDEFIRRWDKFPVAPERRANPAWAENTVDGED INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDRDNFGKQNVGIYRMEVKGKRKLGLQPV PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPI FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVCDLPETKAWAEKLTAMLANRK >gi|283548476|gb|GG730301.1| GENE 235 261686 - 261907 283 73 aa, chain + ## HITS:1 COG:no KEGG:SC2853 NR:ns ## KEGG: SC2853 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 73 1 73 84 135 93.0 4e-31 MICPRCADEHIEVMANSPVEGVWTVYQCQHCLYTWRNTEPLRRTSREHYPQAFRMTQKDI DDAPMVPSIPPLL >gi|283548476|gb|GG730301.1| GENE 236 261992 - 264553 3061 853 aa, chain - ## HITS:1 COG:STM2909 KEGG:ns NR:ns ## COG: STM2909 COG0249 # Protein_GI_number: 16766215 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Salmonella typhimurium LT2 # 10 853 12 855 855 1568 95.0 0 MSTIDNLDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGA SAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPTTSKGPVERKVVRIVTPGTIS DEALLQERQDNLLAAVWQDSKGYGYATLDISSGRFRVSEPADRETMAAELQRTNPAELLY AEDFAETSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLIGFGVENAPRGLCAAGCL LQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLASVLDCTVT PMGSRMLKRWLHMPVRDTKILTERQQTIGALQDSTSELQPALRQVGDLERILARLALRTA RPRDLARMRHAFQQLPELRAQLERVDSAPVQALREKMGEFAELRELLERAVVEAPPVLVR DGGVIATGYNEELDEWRALADGATDYLDRLEIRERERTGLDTLKVGFNAVHGYYIQISRG QSHLAPINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDMLLPHLA DLQQSASTLAELDVLVNLAERAYTLNYTCPTFTDKPGIRITEGRHPVVEQVLTEPFIANP LNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAA DDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK ALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAG VPKEVIKRARQKLRELESIAPNVAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPR QALEWIYRLKSLV >gi|283548476|gb|GG730301.1| GENE 237 264569 - 264739 130 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLNFNELVIFFVLIKYHIDPFHLMESYILLWVNVLIYKCRQVCYGYTLHNLHFIP >gi|283548476|gb|GG730301.1| GENE 238 265004 - 265132 75 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283835501|ref|ZP_06355242.1| ## NR: gi|283835501|ref|ZP_06355242.1| hypothetical protein CIT292_09869 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_09869 [Citrobacter youngae ATCC 29220] # 1 42 1 42 42 80 100.0 3e-14 MIQGIESKADDETILQNPVVCGSIEHDGLVNGREIAYFGLLD >gi|283548476|gb|GG730301.1| GENE 239 266295 - 266465 58 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086274|ref|ZP_06571440.1| ## NR: gi|291086274|ref|ZP_06571440.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 56 34 89 89 113 100.0 5e-24 MRANNKAFGINDEKTYPLYIFNKSTGEFFGRVKRICDKSDLKESYVSCYPNVKEIL >gi|283548476|gb|GG730301.1| GENE 240 266742 - 267326 30 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283835504|ref|ZP_06355245.1| ## NR: gi|283835504|ref|ZP_06355245.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 194 135 328 328 389 100.0 1e-107 MYFTVRPLYVENDNSNFRILEKWVNSENKSFENFELINELNKKADNSCELFSNIHNYDMV SGTIHSLQQAKLTNSMGGINDDHINHIFYCNDELCTFSWWGTKAQRMTCPTEWDMLPPFL FDGDEVTLFHSATFDQLMRENAKIFKREDNSIYPLFIYNKTTKKLLGSENRVVRKEDINS CQYKYPNDYVSFIP >gi|283548476|gb|GG730301.1| GENE 241 268362 - 268532 198 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283835505|ref|ZP_06355246.1| ## NR: gi|283835505|ref|ZP_06355246.1| hypothetical protein CIT292_09874 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_09874 [Citrobacter youngae ATCC 29220] # 1 56 1 56 56 74 100.0 2e-12 MSNDKKTQVYYVKPSRADIVRSVATSTAVETGQSSEKIEASLEATRKKFAHLRLAV >gi|283548476|gb|GG730301.1| GENE 242 268529 - 268675 66 48 aa, chain - ## HITS:1 COG:no KEGG:KPK_1030 NR:ns ## KEGG: KPK_1030 # Name: not_defined # Def: fic family protein # Organism: K.pneumoniae_342 # Pathway: not_defined # 1 48 137 184 184 84 75.0 2e-15 MAVQGGYRPLDYQSWEQNKAEYISAIHAGMSMDYGPMCYWVSAALRRN >gi|283548476|gb|GG730301.1| GENE 243 268969 - 269481 334 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283835506|ref|ZP_06355247.1| ## NR: gi|283835506|ref|ZP_06355247.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 170 1 170 170 330 100.0 2e-89 MNFYPRTSRLQTGIILLLCFAALMVTAVYRFTKNNGELHNLTCRSTIEIVRNTSSFRGII DIKTGGSKGIVNVDGIIKDAGNNEQTVQRMVLFTQSSYGSSPVWISQKIQISNRETAPAS LIQELLPDFFLTNTSVSNVDYFALNSETYLITKEGIPYLYCQNYALPENE >gi|283548476|gb|GG730301.1| GENE 244 269481 - 270266 396 261 aa, chain - ## HITS:1 COG:STM3759 KEGG:ns NR:ns ## COG: STM3759 COG3710 # Protein_GI_number: 16767043 # Func_class: K Transcription # Function: DNA-binding winged-HTH domains # Organism: Salmonella typhimurium LT2 # 9 256 34 279 285 92 26.0 7e-19 MSETGNVSYLIENRIIFTPDAQSLARVDQPNQRIKLKHSASLCLLLLIQHRGQVVSQNEL LAFGWGKNHRQVSFNAFYQSILSLRKSLLQLELEQPLITTIPRKGLIIQESFDIQAIETP EDISSSGEASVAPDTVIADLLPGTSRQSLFTTVEIIMVTLTLIICALILYPWQASDDYFS GYITAAKTPSDCQYYFNNDASNFSRHTAFIDKNPGLCQGNKFIYITTYPESKKLSVLVCR SPMKARQENACQSVYYPRYDS >gi|283548476|gb|GG730301.1| GENE 245 270712 - 271317 521 201 aa, chain + ## HITS:1 COG:no KEGG:YE105_C3240 NR:ns ## KEGG: YE105_C3240 # Name: not_defined # Def: putative DNA-binding transcriptional regulator # Organism: Y.enterocolitica_palearctica # Pathway: not_defined # 42 195 9 162 172 169 50.0 5e-41 MFQKEIENAVVLVGDEMKKSDNAWLSLRKKRQRIDLKVDGNILFLEKGTISVYRVENDLV TVSISAPAILGLPQMRTEVAGHYLRCDTDCEMWAMSVQNADHLFTAKNLWKQAFDILTHH LQRYFQREALQSHRTIREQIIEHVKYIWSMEPEVREKTSVYTFILTRNHISRSAIHKVLQ ELVNDGKITLNRGKLSFCTPL >gi|283548476|gb|GG730301.1| GENE 246 271359 - 272732 1296 457 aa, chain - ## HITS:1 COG:VCA1080 KEGG:ns NR:ns ## COG: VCA1080 COG0845 # Protein_GI_number: 15601830 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Vibrio cholerae # 25 456 31 481 481 328 40.0 9e-90 MHLADFLARAHRAMQHYFHGRDENQTDSINEVSQAIIDDSPRVIRLTLWTILALVVLSFV WAGFAKIDEVTRGEGKAIPSSKLQKIQNLEGGIVTELYVHEGQIVNAGTPLLHLDDTRFA SNVGETEADKLGLRAKVERLTAEVENQDFVISPEIASKAPDVARGETELYNSRREQFHNE ISGLEEQLVQKKQELRDFESKQDQFKHSLGLIRQEIKMSEPLLASGAISKVELLRLRRTE VETAGQLNSISLSLPKAASEINEIENKIGESRGRFQSDALAQLNEARTNLSKTQASVKAL EDRVNRTMVTSPVRGIVQQVMVNTIGGVIQPGSDLVEIVPLDDKLLIEAKIQPRDIAFLH PGQHAMVKFTAYDYTIYGGLEGEVVQISPDTVTDKQGRSFYIVRLQTDKNYLGTKEHPML VIPGMVASVDILTGKKTILSYLLKPIIRARAEALRER >gi|283548476|gb|GG730301.1| GENE 247 272719 - 274923 233 734 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 495 716 126 346 398 94 29 7e-18 MVAEMSAQAELLNDVPENTDNHYSQHHDPRSHNDDPLLDSLLILCSLHGKPASRSTLSSG LPLENDRLTLNIFPRAATRAGLKARVVTRALDKIPAMSLPAILLLRSGGTGVLLAWNDDG SARFMPSESEGGEIRIDSATLEQNYAGKVIFAHPRHEFDLQAEAFLPRTKSWFKDTLKLS RFLYMDAVLASLLINLIALGTPLFTMNVYDRVVPNQATVTLWVLAVGICLAFVFDLILKM LRGICLDIAGKKSDLIISSTLFERIIGMEMKERPARVGSFAQNIHEFQSLRDFLSSLTLT TIIDLPFTLLLLIVIGIIGGALAWIPLLTLPIALLCSWALQKPVNAAVTKTMSLASERQA LLIETLSSLDAIKVNNAQSERQFQWEQTLGSLSRLELRVKTLSSLASNLTGWFQQISGVV MIIVGVYMIIDGKLSMGGLIACYMLNGRALIPLGQLTGLIARYQQAKLTIKNTEKMMSLA QERRADENPLKREQLQGSIEFRDVDFSYPEQQNLSLQKINLTIQPGERIGIIGRSGSGKS SLSKLLVNLYHPSAGNILIDGIDSRQLDVNDLRHSIGYVPQDIQLFTGTLRDNLLCGARY VDDETMLRAAELAGVNDFARLHPDGYNLQVGERGSRLSGGQRQAVALARALLLDPPLLLL DEPTSSMDNTSEEKIKHALVPRIAGKTLLLVTHRASMLSLVERLIIVDKGRIIADGPKAV VMDALKKGQINASR >gi|283548476|gb|GG730301.1| GENE 248 275001 - 276344 1294 447 aa, chain - ## HITS:1 COG:VC1621 KEGG:ns NR:ns ## COG: VC1621 COG1538 # Protein_GI_number: 15641628 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Vibrio cholerae # 15 429 25 436 445 244 34.0 3e-64 MKKLLVFLLSCFSINLVNAEDLQNTVKNALANHPEVNAAINSRYSSEQELRAAQGGYLPS LNLNAEAGRKNVDDATTRAAGCNNGLTQSPNEATLSLEQNVFNGFATASEVARQKATVDS RAWSVMNTSESTAYAVIQAYFDVLQREEFVRLAEDDLANHERIYDQIKLRTDQGVGRSGD FMQAEARLAQARNNLLTEQTNLEDAKTTFASVTGMDPQGLSLPESIDSQLPTSLEDAKNR MEKNSPLLKSATADIEAAHQQYEASKSTFYPRVDVELSRGISNNTDTTRAHTEEWEAMVK LHYNLYQGGSDKANMNSRAYLHKQAQDVRNNTLRQLNQELRLAWTALQNARAQLPSAEEY ADRSVKVRTAYQDQFSLGERTLLDLLDSENEVFSSKRRLVELRYLAITSGYRISERTGEL MNILKITPPPSGQPVDSVAADNLPELH >gi|283548476|gb|GG730301.1| GENE 249 276677 - 284785 7649 2702 aa, chain + ## HITS:1 COG:no KEGG:Shewana3_0382 NR:ns ## KEGG: Shewana3_0382 # Name: not_defined # Def: outer membrane adhesin like protein # Organism: Shewanella_ANA3 # Pathway: not_defined # 221 2516 1601 3813 5839 869 35.0 0 MSKLLGVIKAIIGQVYVVDANGTQRLVHEGDRVYSGEEIVTGASGAVSLSLPDGKTLDIG RNSHWGEHGLQASHNPDNNAQDIAAVQKAIADGADPTQVLEATAAGNDAPVQLEGGGGGH TLVQLELTGQVVDPTAGFNTNGLGSPSWDINLPVGGTTASKASVFPPEVQITEFAGNDGF INKSEFHQTRLSGTSNQNHVTLTFTDSQKNTFTVEVPVNNGHWTIDTDLGGLAPGNVTVA AIATDVTGRTAESVDNALIDITGPRIDIRIESVTPDNLINYEESRQPQTLIHGSVGGDAR PGDVVTLLVDGKEYTGVVTDPGSGSLVYTIPVLTDGLLNDPNVHATLTSFDDAGNSTTVS TDRHVDQDLSAQNAVTIDAVATDDVVNANEFRMPTLISGVASGDAQAGDPVTLTIQGKAF HGTVFDDYGQLRYEIVVPSATLKEGANDVQVTLVSHDAPGNEATAVTHRTVVLDTQAHNA LTINDVTDDNTLNRAELYARNQVISGTVSGEDAKAGDPVQLEINGHQYNGQVIDLGNHSL GYRIAVNSSDFANNSIPVDGNVEVKVTVTSHDAAGNLAIATDTHSVHIDNLATNQVNIDA VATDDVVNASENRMTTLISGVAGGDAKAGDAVTVSVQGQNYAGTVVNDNGQLRYEVALPK GTLLEGKNDVLVTLVSHDAAGNEATALAHRTVTLDTQAHNSLTINDVDSDNTLNRSELYT RNQVISGTIGSNEDAKPGDPVQLEINGHQYRGEVIDLGHNVLGYSITVDTSDFANNSVPI DGNVEVKVTVTSHDAAGNLAIATDTHSVHIDNVAENSVHIDTVATDNVINYQELSAATQR ITGIVGGEDAKVGDPIQLVVNGHQYASQVIDLGQGTLGYRIDVDSSAFANNRVHVLTDVD VHVTVTSHDAAGNLAIATDSHKVHIDNFAKNVVTTAVVASDDVVNAIENRMPTLISGIAK GLDAKAGDVVTVHVQGQNQDFSGTVVNDRGVLRYEVFVPTGVLQEGGNDVMVTLVSHDAA GNRAVAVEHRTITLDTQAHSTVGIDDVTVDNNLNHQELDTPMQLITGKVGGDAQPGDAVR VEINNQTFHGKVIDLGGGVLGYQVPVNSSAFSDNKGLLDKDVAVSVTVISHDAVENEVIT TATHVVHIDNHAGAGITVDTVAGDDKLNGAEAAKHLTEVMGTVSGDVHAGAKVQVIVNGH TYETTAQALPEHNNALGYKLDVLSRDLVKDPHIVARVVGEDTVHNFQQAGIMHDLEVDLH AKAMLTIDPVTGDNMINGDESKQPFTYVTGKVAGDVHVNDVVYLTVNGHVLTGKVSDTGG GVLGYSIKVSTADLISDPHLTATVSTTDGAGNPATANAETTVIIDTRIDAQITIDAVTPD NTLNLAEQMHGYTMVSGTVSGEVRPGDPFTMTINGHTYSGVVEDRGNQQMGFHVPVATAD LVASPHIEVSMDVTDAAQNHAHIVAHHDVNLDAQALASITLDPVTGDDVLNKIELGQTTT IVSGTVGGDAKINDVVHLNIGGHMVDVTVTNLPNPGTLGYSTDVDTQWLQNDPHITATIT TADAAGNNATADAHSTVIIDDQIDAIVHIDPIVTDSGDAVINHDEALKPQTTVTGTVGGD VKIGDTVELTINHQIYYAQVEDQNGQRAFSAKVSTLDLLMDPHIHAEVTAKDDAGNIAHG HDDMPVVVDTVADAGITIDSALSWRGWALPAGNRPEFVTVTGHVTPDAKLNDLVTVDVGN NTHLETHVITLPDGQLGYTLDILSQDWNNNGNITVSITTHDDHGNTATAVEHKFIDLPWV TQTYTPANTPFSMHTPTTTGAGTTQPHQPTVHLTVDKVTGDDVLNHDEAQKATTAIRGLV SGDVQAGDKVIVTINNVQHTGHVMTIPTMPGQLAYEVDVPTNELQAHPTFDVSITAGTAT DTVQKTITVDTDNPLQITMDKVAGDDVINAAEAQSGKTTVSGTVSGEGIHDGSVVSLQIN GNTLTAVVHDDKHGHLSWSTKVGINDLHNNPDIIATVMATDDNGNLGSASASGHVVVDLS ADAGVTIDNIAGDNVLNARESQQPKMTVTGSVSGDVHPGDKVTLTVNGNPYAAIVDNNHH YSVDISTKDLLADRAIVATVSGYDDRGNVQPASFTQGYSIDKSASGSVTINTVGGDDIIN ADEVKAGSVEVSGTVDGDVHLGDKVAILVDGVTVHTRVIELPHMNGQLGYKALVSTAGLQ HDPNIHVSVQGQDSALNPMHAGNDKTVTIDTQVDASIVLDKVSVDDVLNNEETQHAKTTI SGYVTGDVDVGDRVTITVNGKDLVADVKNSGGQKVFSVDASTVDLIHDQKITAHVTAHDD AGNRDEIHTDKTITIDRTAAGTMDIDSVTSDNVLNHQELQGTTVRLTGHLGGDVDVWDSI KLKIDGHEYTGSVETLSHGERVWHVDVGSDVMKANTTFSVEVNGHDAPGNPYSKTTSHTY AVDQQADATLIMDKLTGDNHISRAEAQGAITHITGSVSGDVHDGEHIKALVNGHQYDAIL HQGNNGLTYDIEAETSAFRAGHNRVSVLVEAHDNHGNITPYTQALNVTMDDPAPLKGHTA DKGNHAAMQHALHNLFDDNALSLSYAPAATGRGQATAVLSADDKAKAVLDKVDLSDLARE LHEGVDIAKYIQSGGDHQHIASPAKVAHGIDTALSTPTSDALHSATYSLDHLIAKPDHNP TH >gi|283548476|gb|GG730301.1| GENE 250 284837 - 285127 318 96 aa, chain + ## HITS:1 COG:no KEGG:Pfl01_0132 NR:ns ## KEGG: Pfl01_0132 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens_PfO1 # Pathway: not_defined # 32 93 47 108 112 75 62.0 7e-13 MKNTDINSAPSEAHAQTEGAGKSAKNDTPQPLEMLQKSDLEMVRVLDDLIYLLIRKGVIA ITDLPPMAQVKLMNRANARQELGGLEQLLGSDDRIF >gi|283548476|gb|GG730301.1| GENE 251 285429 - 287288 1296 619 aa, chain + ## HITS:1 COG:no KEGG:ESA_00983 NR:ns ## KEGG: ESA_00983 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 81 597 4 514 541 326 46.0 2e-87 MSDSVLAGVSLILYTGKNYAGTQQLVAHGDFGELAISSASWDYASAAMSSMQAFIFSDVS TADASASYLGHAEDLLSTSVSDLTALYPSATQFPLNFLGLNPAIATLVRLVIDPEQAAPD AVASTALVGGSATNITTLSLPGRPGALGFVSLTEGSSVVAACPYGTYNSADGTIDWSGKM GSVVLEYTGGRIVVVSTSGFPDGWDFGAPEQQADGSWTVALNGGVPAGNEIAAISASPAS IVNDGSSASVITASVVNANGLPVSGVTVNWSTTAGSLSVASSVTSANGKATTSLTDSGTA GLVTVTAAISGSSKSTQMTVTDSKAGYVLASLAADKNTLLNDGTDLVKLTATVKDGNGNL ISGVPVYWSTTLGTLNHVEQDSDTVGESHAKLTDTGDTGTASIIAQLDNGSHKTLNISIT EFRQLYFITDAPALDYLDDDSTYTTENAVAIYGKIGDVVELTLTGSELDNPVFVDNNLNN ITIVVASVPEIASVTDHQEVVTVSTTINGEPQQPGTLTFGHFPTVDGQSLAATNGAKADG ICYNNVYYNTSNLQYSSATATLSGSAVFAGTNSQSLALNLPAPSYDYYFTITNTVAEEVL ITVQLENYFTINCTSRFDV >gi|283548476|gb|GG730301.1| GENE 252 287399 - 289333 2093 644 aa, chain - ## HITS:1 COG:PA1433_3 KEGG:ns NR:ns ## COG: PA1433_3 COG2200 # Protein_GI_number: 15596630 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Pseudomonas aeruginosa # 402 643 8 249 254 244 50.0 4e-64 MSLFKQLLLAISLFMMVVFSGNFIVTLESSRDQSNNQLLSHAQDAATALGVSLTPNVNDP AMIELMVSSIFDSGYYKKIRIINLQNGKTMLERSAAASIPDVPGWFVDLVDVTPQTGEAT IMRGWQQAARVEVTSDPIFAVQRLWDNTLGNLLWMLSCSLACLIAGILLLRKLLRPLNYL AKQSEAIARREFLTLQELPKTPELRRVVSAMNLMAAKLKSLFEEQAVYSERLHNEAYLDS QTGIANRRAFDMQFQARLSDADTAPGYLMLVRVQDLGGLNQRFGGPHTDKLLLNIANLLN AHKEKYAPLDSTLARIRGGEFALLCPGVTHGEMLNMGNSLCQKLTAFYATGMSDQQPVAY TSMVPFSAGDNAQSLLFQADRLLVEAETHTDHQVVPTTEVPAATEDQHLWFVRLEHALEN QQFQLAFQPVMDCRQPDKILHYKVLSRIIDEQGNTITAGRFLPWIHRFGWSHRLDKVMLK LTLNQLKTAPGKLALSISGSSVSSASAIADLLNPLRYAPRLASQLILELDENQLPGPHQM AAFVKAANQHRCALGLQHFGSRFDMIGHLSQWGLAYLKIDSSYIRNIDEENDKRLFIEVL CSATRSIDLPLIAERVETQGELKVLQELGIDGAMGQLLGEPAPL >gi|283548476|gb|GG730301.1| GENE 253 289343 - 289981 474 212 aa, chain - ## HITS:1 COG:PA1434 KEGG:ns NR:ns ## COG: PA1434 COG3672 # Protein_GI_number: 15596631 # Func_class: S Function unknown # Function: Predicted periplasmic protein # Organism: Pseudomonas aeruginosa # 15 211 37 232 237 236 59.0 3e-62 MLLLLLAVHSLRAAWDFASIQQKSDALYGPASPEAQRRINAWQQLLLQLRHADEQTQLHA VNQFLNDKLRYTEDIDAWHSVDYWATPIESLRKGEADCEDYAIAKYFTLRQLGVSEDKLR ITYVKALRLNRAHMVLTWYATPEAIPLILDSLTNTISPATQRMDLLPVYSFNNTGLWLPG NQNNKRVGDSKRLSRWQQVFIKMREEGFPMDK >gi|283548476|gb|GG730301.1| GENE 254 290038 - 290931 590 297 aa, chain - ## HITS:1 COG:AGl3137 KEGG:ns NR:ns ## COG: AGl3137 COG0834 # Protein_GI_number: 15891687 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 27 278 16 267 297 151 31.0 1e-36 MKNIINREVARVKRAVQWLTLLAGIVVSPTLMAQQNAATLDHIQNSSVLNVGYRQLPPFS LTDNNGKVTGYTIAVCNMIADKLRQYLKLSSLTIHYIPVNFGERFSALNTRKIDMDCSVN TNAPERMSSVSFSIDYYTAKMRIIALRKNNIHSIVDLKGRTVSLPGSSKDLLEFNKANRE QHLNISTITTTTINGAFDKMAHNEAAALFLDDVLAWPLIKDSEQPELFSMSAQSIGNDMH YAIMMRKNDPQFVTFVNSTLKDFFASPINTQLRKKWLSPWSCEKMKVPSPDSCQHSN >gi|283548476|gb|GG730301.1| GENE 255 290915 - 291847 755 310 aa, chain - ## HITS:1 COG:AGl3137 KEGG:ns NR:ns ## COG: AGl3137 COG0834 # Protein_GI_number: 15891687 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 29 293 17 286 297 190 38.0 3e-48 MSDILRLAKRILLCASVLMAWATPCLAGTPLQLHTLEQIASKQTITLGYQDDAFPFSWQN GNAPAGYSIDICNSIVRALKTKLQLKNLKVKWVLANSASQFVLIKNHMADIMCIPAFYSQ SRHSISEFSLPFYFSSTRFVMRKNESNDNLAELSGHSVLVKSGTIYVEQLQKVNAANDLN INIHLNTNNITAFNELKNGEYSALISSTVLLKGMIAQTPTPEDYALSDIALSAPLPAGLL LPLHDKEFKEFVDSTLSSLMTSNDFTALYNKWFQSPIPPKAINLNIPMSDNLKALMSAKK KISFDYEKYN >gi|283548476|gb|GG730301.1| GENE 256 291840 - 294032 1894 730 aa, chain - ## HITS:1 COG:AGl3140_1 KEGG:ns NR:ns ## COG: AGl3140_1 COG2199 # Protein_GI_number: 15891688 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 15 449 33 474 476 341 42.0 4e-93 MAQSLFSLKAIKGWQHSITGKITQFLLVGIVIAFSAGAFTNWSLINSFSYQQWVQRAEAN AQIMTYIIRSVYTTVSVETSDAGQISRIVSDRQIGDTDSILQTGYNPVDVLALASVQTHS PTWLFLYTPEKGFIGINNKSEDGEGIISFSGRLPRDVLVKYYVGFAQINGEECFISAVPI LTPSGEILGSLISSIGKKSELYATYDAMLKKSSIIFVLILLVTLALVTLFMRRLFRPVPL LIASLTRIAHEETDCITPYLDQDDEIGHLAGAIEKLRVAMKERGYLQRMHEMSQKMEHMA HHDSLTGLPNRVSFGQALDKRVSEIHLDEKPFNLLLIDLDNFKPVNDTFGHKAGDELLIS VAQRLQLLLGPNDIAARLGGDEFAILQHVSDNAIREANRLAKRIIRALSTPFTWSTHTFS ISCSIGITTAPYQGNNTSTLMINADLAMYASKHHGRGCFHFFEDGMVMKQTHSLFINQEI IDGIDNKEFELHYQPIINLADESVYGYESLIRWNHPTKGMIYPDYFINIAESSGLIVRLG EWIIRQSCEAAAKWPEHTRIAVNISAYQLHSPGLVDVIKDALRISQLAAERLEIEITESE KLDKSIALPVLQEIRALGIEIAMDDLGTGYAALDYLLIYPFTRIKIARTLVDKLQQDNAS QYLIVMLIQFAHKYDMSVTAEGVETAQQRDILRDIECQNVQGYFFSYPLREHEVLSAFAG ETTEGGLSNV >gi|283548476|gb|GG730301.1| GENE 257 294642 - 296834 1359 730 aa, chain + ## HITS:1 COG:Z3766_3 KEGG:ns NR:ns ## COG: Z3766_3 COG2200 # Protein_GI_number: 15803026 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 EDL933 # 472 727 1 259 272 261 48.0 3e-69 MDAIINTNTAKSIQKWCLPLALPGLLYPLAQYLNGYCLLNNNILTVYDLKLAVFSAALVL FGFRVLPGFILFLALMFVVGPQSERVDALCLVMASTFSYAAYRKVTGRRSCASFGRIKIS LNRLIWLCGFNILLYLLFSRIFAVFVTHGHRPDVDNIPVLSLEMLVRIQGIINGCLTGIP FFYKIYRIIRRPSYLLTFIRAIVLQCKGNITAFGVSVWCILLISLMFCLTSPHSPNIFFS FYSLILLFPLMLWGAIKIGHSFTMLVWTVVLIILGKHNDSYIASDINFMLHQALVSTLIF VFSLTIVIMGALAKFTRQRFNQVLRLGLTDPMTGMANLRALKTELFTTEGATVCLIQIPE LELFSRRYGFHFRARYQKILAEHLRRHLIKSEKVYYHAGYDLLLRLENGTWERLCDLYQA ANSFRLFYNNHRLGFRSGLGYCLINDHSDDIYQLVGKLGMVAGLSLTNGRPENLEAQHSR VLGNHIVDKTEIRTALQNALDNNGFVLMAQPIVSTHGEAPYHEILIRMLNERGEFIPPNS FLPVAHDAGLAPDIDLWVIESTLKFMRTHPQRCFAINLAPVTVCRSNIVTRITQLLHDYA VEPQRIIFEITEADTLSDKEQTVETLALIRQLGCRVAIDDFGTGFASHARLMNIEADILK IDGSFIRRITESEISYYIVESFCRVAEMKNMQVVAEFVENANIQACLEKMNVGWLQGYHI GKPTPLLTLE >gi|283548476|gb|GG730301.1| GENE 258 296896 - 298986 1615 696 aa, chain + ## HITS:1 COG:RSc3136 KEGG:ns NR:ns ## COG: RSc3136 COG0840 # Protein_GI_number: 17547855 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Ralstonia solanacearum # 109 691 102 660 661 194 26.0 3e-49 MSDIIKVKNRTAGATGVGPRARLLSWLHNIHPGVAMKLGMILVFCIATLLIGASFILSSY LSEELQANALEMIKTNTRIFHNSISNEFQRVTRDAEHYSNVYINNYQNVADKPLRYMDAT ELKAVLSNPNTNAHFTELTSVFASTFILQGEQFTRVSSTLLASSGNTATATVLGHDNPAL PLLLKNKPFSGVVTLFGKQFISHYEPIADKYGQVVGAVAVGFDVKQSLQPIIQRLLNVHV GKEGYAYVLDAGFEPGRMLVHPSLSNQQAINITDANGYKLFADILEHKNGITYYNWVSRY GTPPRTKVAVYEYIDGIDWIIATTSYVDDVSRSSNLVRNGLLLFTAFLLPVILVLIAVAS RYLISRRLNRVLGIAQTIAKGDLTVDVEIDHHDEIGELLSAVEMMRQRLHSLVGDMVSHA DSVHQASLHITEAVDGQASTSVETSSSVAEITSTMEELSASSTQIAEHSRAVVDIANQTL EDCNKGSESMSQLLMRMTDIDTDNQQNMREIMMLGNKSTEISRVMVIINSVADQTKLIAF NAALEAASAGEAGKRFSVVAAEIRRLADSVTESTVEIENKISEIQNAINRLVLNAEKGGE SIKAGARACKVSAEHLNDIVVTAEQTSTAALQISLSTQQQKTASNQVVMALREIVVASNY TSQSIKDILVVSQDMTQLSKALKEASTSFTLTETDA >gi|283548476|gb|GG730301.1| GENE 259 298983 - 300050 754 355 aa, chain + ## HITS:1 COG:PAB1331 KEGG:ns NR:ns ## COG: PAB1331 COG2201 # Protein_GI_number: 14521753 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain # Organism: Pyrococcus abyssi # 6 342 8 348 368 151 28.0 2e-36 MNSGNIRVLILDLDSASRNELVRQLEEHPDIKVVGQAAHRRQAIRLLQQLMPDLLILTLD TSGAENVEVVETIMATSAIPILVMRFCPEKQWDEDYISRGALAVLHHSSDFPLSTDALHR KVELLVGVKVIRHIKGLRHPTEPVMPAARPTMNAVKTTQDWPFVLAIACSTGGPQALSKL LQDLPGTFPCPVLIAQHIADGFAKNMVHWLDSVTELKVRLAQEDDRVEAGYVYILPPEQH LIVKSNQRLAAIPRQESDVYHPSCNLLLESVAEVFREKAVGLIMTGMGSDGCRGIELIFR RGGRTLAQDEESSVVFGMNKNAIDKQLIHRTIPLNGLASVLLSMALHGHFESKLP >gi|283548476|gb|GG730301.1| GENE 260 300047 - 301459 1153 470 aa, chain + ## HITS:1 COG:MA0013 KEGG:ns NR:ns ## COG: MA0013 COG1352 # Protein_GI_number: 20088912 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methylase of chemotaxis methyl-accepting proteins # Organism: Methanosarcina acetivorans str.C2A # 3 242 112 360 382 130 32.0 5e-30 MIPNLPDYARLIKERVGLHFDNAMEALLKSALKRRMSERNISNYYEYYEQLRMSQDEFDN FITLITINETYFFRESDTLDLICDKWVPRLLQQRSGPLRILSAGCSSGEEAYSLAIKLHE KYQGEMAQQIEIYGCDIDPVILAKARNASYSSYSFRGVDPGIQQRYFTRSGNLYRLHDAI REKVSFHRTNIIKEQLLPEVDIILLRNVSIYFDTPTRRELHGNLSKMLQPQGALFFGNAE TLANNFDILKLEQEEGIFYFCHHREAAKVAPVPRAAARVAPPRTVVELDAPAPTVQQNND WLKKARACLDEKCFSEAEKCIACVLRDDPRNPDALLIQGVIALEQRQFSQTAGNAQKILA QDEWSAEAKMLLGMAMMWQRQTQQAIAWFKQVVYQEPGYWPAHYYLAEMYRQSELRQPAQ RTYRVVMQLLNDEMNNPSTVCRLRLPMVFPGNTFRFLCEHQLAQFAHQSG >gi|283548476|gb|GG730301.1| GENE 261 301471 - 303588 1835 705 aa, chain + ## HITS:1 COG:PH0484 KEGG:ns NR:ns ## COG: PH0484 COG0643 # Protein_GI_number: 14590396 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis protein histidine kinase and related kinases # Organism: Pyrococcus horikoshii # 157 554 380 751 766 209 31.0 2e-53 MAIDLKKFVLRFIDEGRGHLQTISEGAFLLSADEHTEAWIGEMFRAAHTLKGGARMLKLQ SIADVTHYLEDVLSELRDNKLTPDRVLGNLIHESVEYLSGQLTQLFVSEGDNQLPPADAG LCERLARASRGETVTAALESPAATDKPAAALSVDSGIKQADFVRVKLNKLDGLIDILGEV LAGHDRLEQQIQNLSQLVPRLPGLSAEQLRQQIHDFSAQLKESVQLQHLQMFELYDVAAR IRMLPLSTLFEPISLQVSELAATLNKQVVCRFVGGEVEIDRQLIDRLSESLTHLLRNAVD HGIGEIDERLALGKSTRGTITITTQQDGSGILLRIEDDGRGLNYEAISAKAVSKGLVPAS MAGQLSEQECNELIFHPGFSTSKIVSELSGRGVGLDVVRKTVVTDLQGDLQVYSHPGVGT SFSLRLPVSLTMMRIMQFEEQGHLFGLAAQYVVEVVECTPEGISDIAGRPAIILHNEFIP VVCAGALLGIHDRQGNHSSAGQRLIIVQNQYSKMALRVDKLLDERKMMIKPLPKHMQQQS LVSGMVQTPDNQLVSILQVPALMAMAQQSRQTSAPAPAASVAQDAWHVLVVDDSLNTREI EKNVLEAHGYQVTLAEDGLSGLQKAKLTQFDAVLTDVEMPLMDGFTFTKALRAEKNYQHT PIIIVTSRAKEEDRRRGIQVGADAYIAKGDFEQDSLIKTLKMLLC >gi|283548476|gb|GG730301.1| GENE 262 303611 - 303973 379 120 aa, chain + ## HITS:1 COG:all4503 KEGG:ns NR:ns ## COG: all4503 COG0745 # Protein_GI_number: 17231995 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Nostoc sp. PCC 7120 # 2 81 23 108 253 57 40.0 6e-09 MRILLVDDDLFAAELASIFLQMDGYDVVIVESAISALACLDSDNSIDLVISDLHMPEIGG LDLLALLRAQNWSKPFILLSANEVTASDLLYDRWVKKDENLAENLGAAVNALLQPSVVTE >gi|283548476|gb|GG730301.1| GENE 263 304014 - 305663 1311 549 aa, chain + ## HITS:1 COG:PA4843 KEGG:ns NR:ns ## COG: PA4843 COG3706 # Protein_GI_number: 15600036 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing a CheY-like receiver domain and a GGDEF domain # Organism: Pseudomonas aeruginosa # 135 543 124 532 542 268 36.0 1e-71 MAAAQEKIARLRQGFLRRIPDMLAQAERLLVQLVAEPSEACRKQLHILLHSIHGSAGSFG FSPLANASAEGERLLTEPETGPGTLHYDELRRILRWLYTLTQEQLNLEHRISDTDFTLPI AAQRPEGGYVRRASKPIYLCDDDVDQVELLATQLRCFGFTCHVFANTQDFTQAVLSQPPA VVIMDVSFPDNAYGGPLAMSDLKQKVGKPFPVLFLSCHSDFNARINAIKSGCDGYYVKPA SITDLVQELHRLTQPSLKKPYQVLLIDDEPAVAEYNAERLRMAGMEVHVLEKPHYLLHVL NAQPIDLVLMDYHMPEFSGEELTKLIRQIPQHIGLPIAYLSSETNKHAQLGAMSIGAEDF ILKQADPEELIRAVTIRAERMRVLRARMSQDSLSGLYNHSTTTHYLKSAIAESNYSGNPF CMVMVDLDRFKSINDTYGHAVGDQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPGTSS DKAARVVERLRRDYEQVTFSVNDASFHSTFSAGIAQWQFGDRVETLRERADQALYAAKQN GRNTFCIAE >gi|283548476|gb|GG730301.1| GENE 264 305675 - 306199 627 174 aa, chain + ## HITS:1 COG:PH0478 KEGG:ns NR:ns ## COG: PH0478 COG0835 # Protein_GI_number: 14590390 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Chemotaxis signal transduction protein # Organism: Pyrococcus horikoshii # 29 158 6 138 145 62 29.0 3e-10 MSQQLEHILALNHGEKPECENVDEPQRTLVLFQLAGKNFAFYGAQIKEILAERPISWVPC CAPMLEGVINYRGRVESVMRLDGLIDKPDVNPAGKRTILIGCAEKMQSGILIDKLIDVLE VTESQIHLPGDSLPPALQTIAVGVVNVAETWFTLLDLNLVFARYQETSGYADSH >gi|283548476|gb|GG730301.1| GENE 265 306183 - 306542 285 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283835528|ref|ZP_06355269.1| ## NR: gi|283835528|ref|ZP_06355269.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 119 1 119 119 230 100.0 3e-59 MPTLTNLAVVRITLGTLNFYIPANQVGRCSLVTQVAPEIPRFSQWLGIADEPQQGRHLHL FVPQSGVETGWYLWGQLENVILPGDTIFAVPPLLVRNCHLPALRALVGSEAFSPLLSWR >gi|283548476|gb|GG730301.1| GENE 266 306552 - 307409 707 285 aa, chain - ## HITS:1 COG:STM2864 KEGG:ns NR:ns ## COG: STM2864 COG1108 # Protein_GI_number: 16766170 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 275 1 275 282 408 88.0 1e-114 MSLTTLLEPFQFSFMVNALVISTIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAW IAGIPLAIGAFIAGLFCAVATGYLDDNSRIKRDTLMGIVFSGMFGAGLVLYVSIQSEVHL DHILFGDMLGVSFSDIVQTSTIALGIALIIGLKWKDLLLHAFDPHQAKASGLNTTLLHYG LLCMIALTIVATLKSVGIILSISLLIAPGAIAILMTRKFSHALWLAVVISVITSFMGVYL SFFIDSAPAPTIVVLFSLLFVMTFIYSTLRDRRLERRRQHGVSAC >gi|283548476|gb|GG730301.1| GENE 267 307406 - 308263 1077 285 aa, chain - ## HITS:1 COG:STM2863 KEGG:ns NR:ns ## COG: STM2863 COG1108 # Protein_GI_number: 16766169 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 279 1 279 286 457 93.0 1e-129 MNWLTEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYML GLPFALGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFFGIGLFMVSLNPMSVNIQT IILGNVLAIAPEDIVQLAIIGVISLTILLLKWKDLMVVFFDENHARSIALNPGRLKLLFF TLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLTIAVAIGSLTSFFGAWLSY WLDGATGGIIVVLQTLLFLLAFVFAPKHGLLANRRRARLVNKESV >gi|283548476|gb|GG730301.1| GENE 268 308260 - 309096 258 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 1 239 2 234 309 103 28 9e-21 SGEPTMSHSAITVNQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSGKSTLFKALMGF VRLAQGEIAILQQPVNQALKQNLIAYVPQSEEVDWSFPVLVEDVVMMGRFGHMGWLRRPK QIDHASVDAALARVDMLDYRHRQIGELSGGQKKRVFLARAIAQDGQVILLDEPFTGVDVK TEARIIDLLRELRAEGRTMLVSTHNLGSVAEFCDYTVMIKGTVLASGPTETTFTTENLEQ AFSGVLRHVALNGGEQHVITDDERPFISRRATNEGESA >gi|283548476|gb|GG730301.1| GENE 269 309078 - 309995 1014 305 aa, chain - ## HITS:1 COG:STM2861 KEGG:ns NR:ns ## COG: STM2861 COG0803 # Protein_GI_number: 16766167 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Salmonella typhimurium LT2 # 1 304 1 304 305 519 84.0 1e-147 MPQLPHLKSFLLAGALTALTLSPAWAQEKFKVITTFTVIADMASNVAGDAADVSSITKPG AEIHEYQPTPGDIKRAQGAQLILSNGLNLELWFSRFYQHLSGVPEVMVSNGVQPMGISEG PYNGKPNPHAWMSAENALIYVNNIRDALMKYDPDNAATYQKNAENYKAKIQQTLAPLHAE LAKLPADKRWLVTSEGAFSYLARDNNLKELYLWPINADQQGTPKQVRKVIDAIRAHHIPT VFSESTVSDKPARQVARESGAHYGGVLYVDSLSAADGPVPTYLDLLRVTTQTIVNGINSG LESQP >gi|283548476|gb|GG730301.1| GENE 270 310178 - 310951 614 257 aa, chain - ## HITS:1 COG:no KEGG:CKO_03723 NR:ns ## KEGG: CKO_03723 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 257 1 257 258 447 84.0 1e-124 MKKITLFAAAMTLALSSICAHADTLLAPSAHAKMDGENKIVALYGNSFTFYNNNINTRLR DLTQSLLPNHAKGYKYRGITISSGHLGWQIENMRYQNTLQKWDVVVLQGNSTETISKKES TRQNFVDSATQMAEMAHKAGAKVVYFMTWAKKAKPEDSQKLADAYISIAQKTGGYVAPVG LAFEKARKTHPEINLYYHDGVHPSISGTYLAACVFFATLYNQSPVGGALPVDTDMTPATA KALQQVAWETVTEFQKS >gi|283548476|gb|GG730301.1| GENE 271 310962 - 311969 990 335 aa, chain - ## HITS:1 COG:no KEGG:CKO_03722 NR:ns ## KEGG: CKO_03722 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 2 335 13 345 345 528 82.0 1e-149 MGMSSSAFALNVYNKDGNTLDIYGRVEGKIASGQNSFAGSESRSDLGGRVGIYLTRDLDL LPETKIVGRLEWQVRTEKNDNNTGESDMEARYSYVGLSNKTWGELITGRTKNPLYQVMKM TDKYKNFTPNIYSYGITTIDDSYQFNRQDGTVQWNAKFAGNEIQLAWVSGNGNSDNEALD YGAMASYRKSFKFGDFRITPAIAASRYKRQDGVETTDGRNQNDQIMGGLQLNYKAYEVAV TALRTSISRDNKSDNNYKGMDSLISYNFGTVKVLTGYSFLNEDGKDIAEKEDWRAEAQLT LAEDTWLSFTYDKEFASKNKKTNDDALIVGLRYDF >gi|283548476|gb|GG730301.1| GENE 272 312409 - 313779 1015 456 aa, chain + ## HITS:1 COG:SPBC8E4.05c KEGG:ns NR:ns ## COG: SPBC8E4.05c COG0015 # Protein_GI_number: 19113634 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Schizosaccharomyces pombe # 7 444 4 444 447 216 30.0 7e-56 MFGKQTTVFDSDLYSSLFTHGRMREIWSDDNLLRCWLRFEVTVARVQSELGIIPEQAAAE IAQACQEIEIDWPALAQETQTVGMAIKPLIDQISASGTPLVSQFLHWGCTTQDLLDSGMA MRLQQTLMLLREQLRDVGEAMKAMAIRHTRTVMVARTNSVDASATTWGLHVCSYLAEVNR HLARLQQLYPRAVTGLFGGAVGNLASVGEKGMETRERLMQALGLNVPCGINNASQDAVVE VVQFFALVHGTLCRLANDVETMGRTPIAELFEGEGGGGSSTMPHKVNPRASNMMQTLARM GWMYASGAPAMLDQQDVRAASMRVLNWTILPEASNALSTSLTRAKNLLSHLIINEEKMRA NFDCSKHFIMSESLTMKLAAKIGRESAYNLVKNLLKHAAGEQSFMEIVQASSAIRASLSV AEIAAACEPLSYIGANDALIAETIAEFDRVKTTEMA >gi|283548476|gb|GG730301.1| GENE 273 313819 - 314712 669 297 aa, chain - ## HITS:1 COG:SMc01602 KEGG:ns NR:ns ## COG: SMc01602 COG1737 # Protein_GI_number: 15965969 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 5 284 4 282 292 89 24.0 1e-17 MYKKNTLSLDEYNSLTLNMGDLTESECRLNEYINKHFNELPYHGIVDLSQNAMVSKATIG RFLNKIGFTGYAAFRKALDITLSKNKISAPFEKNTTQRNNPDITTESIVTDFTHKVAELF NQFKNNIDITSLNAFIDLVLNNQRHIYVVGPSSSHAMATHFCTLLKYFRSDITLLPTDIS ELPKCLINIKEEDVLIVFSYYRFNRVALNIAKWFRKKNAAVVLVTNSEANPYGKFCDLQF VLPSDVQSIFQSRILGFFFIELILHLAYEKGDNEGNFAQLEELFVFFETFSASAHNT >gi|283548476|gb|GG730301.1| GENE 274 315066 - 316433 1390 455 aa, chain + ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 454 1 460 462 299 43.0 6e-81 MTAFIIAIVITVIAAWLIVKNYQPQTVLLLAGLALLTITVLFYPEHSILYDKAKSTGSTW LDIFSFAKESLTTQIAGIGLIIMAAGGFASYMDHIKASNAMVNMCIRPLQVIKAPYLILA LGYICAQLLHVAISSAAGLAMLLLVTFFPVLVRLGVSKASAAAMIGLCAFMDLGPAVGTA NLAAKHAGMESAIYFAHYQMPVAVVVMLAVAVVIYFTAKYFDKKDGFVPGAQSVVEAEEE GRKVPAVYALLPVIPVVLVLVFSPLVIKSIKIDVVTAMILGAVVAFFFELATTRDFKSCC KGIQVFFKGMGSMFTSIVSLLVCADIYAQGLQKIGAVDYLLQSVQNAGLGFTSMTLVMTA LVGVTAVLTGSGVAAFFSFSGLAPSIAAKFGESAVNMILPMQLMAGMGRSMSPVAGIIIA VSKAGECSPFMIVRRTLLPALAGIAAMLVANYVLI >gi|283548476|gb|GG730301.1| GENE 275 316485 - 318179 1243 564 aa, chain + ## HITS:1 COG:YPO1511 KEGG:ns NR:ns ## COG: YPO1511 COG0281 # Protein_GI_number: 16121784 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Yersinia pestis # 10 561 11 562 565 720 62.0 0 MDDNVTNDVLYVPFTGKLLLESPLLNKGSSFTQQERHDFNLGGLLPCAIENIDEQAERAY QQYLEAESHNARHIYLRNIQDTNETLFYYLLKKYLPEMLPIVYTPVVGAACEKFSWIYRR ARGVFISWPDRERIDDILHDIPRHDIKVIVVTDGERILGLGDQGVGGMGIPIGKLSLYTV CGGVNPANTLPILLDVGTNNTRLLDDPRYIGWRHPRVTGEDYFAFIGMFIAAVKRRWPNV LLQFEDFAQHTAVPLLERYRDELCCFNDDIQGTASVALATILAACRGSGRDFRQQPIVIV GAGAAGCGIARHIVACRMSEGMSQAEARRTIYMVDRDGLVMTTNQALADFQQPLAQSPEA LFGWQYEMQTPSLLEVIRNAKPAVMLGVSGQAGLFSQEVISTMYQYCDRPVVMPLSNPTS KMEARPEDILHWTEGQAIIATGSPCEPVEIYGRVIPVSQCNNVYVFPAIGLGAIASGATR ITEAMLMAASRALAEASPLVRDGEGALLPEIGTICEVTRNIAFEVGKAAAQSGVAEKMTD DALLRSIKDNFWLPHYRPYKRRAI >gi|283548476|gb|GG730301.1| GENE 276 318241 - 318609 314 122 aa, chain + ## HITS:1 COG:no KEGG:CKO_04089 NR:ns ## KEGG: CKO_04089 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 122 1 122 122 212 90.0 4e-54 MQLNCGGTMSGKRIAREKMTIQRMISLYESRCPQASDEPGHYEALFAYAQKRLDKCVFGE EKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYQR KK >gi|283548476|gb|GG730301.1| GENE 277 318705 - 320768 2280 687 aa, chain - ## HITS:1 COG:STM2859 KEGG:ns NR:ns ## COG: STM2859 COG3604 # Protein_GI_number: 16766165 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Salmonella typhimurium LT2 # 1 686 6 691 692 1267 92.0 0 MSDLGQQGLFDITRTLLQQPDLQSLSESLSQLAKRSGLADCAAIVLWQAQTQRARYFATR ENSKPIDYEDETVLAHGPVRRILSRPDALHCNYHEFTETWPQLASGGLYPEFGHYCLLPL AADGRIFGGCEFIRNEDRPWSEKEYNRLQTFTQIVGVVAEQIQSRVSNNVDYDLLCRERD NFRILVAITNAVLSRLDIDELVSEVAKEIHHYFDIDAISIVLRSDRKNKLSIYSTHYLDE HHPAHEQSEVDEAGTLSERVFKSKEMLLINLSERDALAPYERMLFETWGNQLQTLCLLPL MSGNNMLGVLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL SGRNARRMVKMNCAAMPAGLLESDLFGHERGAFTGASTQRIGRFELADKSSLFLDEVGDM PLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVF PIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAEALRTLSSMEWPGNVRELENVV ERAVLLTRGNVLQLSLPDVVALSPSEPPVATEVAQDGEDEYQLIMRVLKETNGVVAGPKG AAQRLGLKRTTLLSRMKRLGIDKDALV >gi|283548476|gb|GG730301.1| GENE 278 320991 - 322001 1280 336 aa, chain - ## HITS:1 COG:ECs3586 KEGG:ns NR:ns ## COG: ECs3586 COG0309 # Protein_GI_number: 15832840 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 15 336 1 322 322 582 94.0 1e-166 MNSVQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLELAQLVAEGDRLAFSTDSY VIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKSVVTSMAATA REAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWGAQTLSVGDVLLVSGTLGDHG ATILNLREQLGLDGELVSDCAVLTPLIQTIRDIPGVKALRDATRGGVNAVTHEFAAACGL GIELSEAALPVKPAVRGVCELLGLDALNFANEGKLVIAVERQAAESVLAALRAHPLGRDA AMIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC >gi|283548476|gb|GG730301.1| GENE 279 321998 - 323119 949 373 aa, chain - ## HITS:1 COG:hypD KEGG:ns NR:ns ## COG: hypD COG0409 # Protein_GI_number: 16130636 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli K12 # 1 373 1 373 373 739 94.0 0 MRFVDEYRAPEQVMQLIEHLCERAALLPYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN VEFIHGPGCPVCVLPMGRIDSCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADIR IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKQRDVQNFYFFCQHITLIP TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLI EQKIAEHSVVENQYRRVVPDAGNALAQQAIAEVFCVNGDSEWRGLGVIESSGVHLTPDYQ RFDAEAHFQPAPQQVYDDPRARCGEVLTGRCKPHQCPLFGKTCNPETAFGALMVSSEGAC AAWYQYRQQECEA >gi|283548476|gb|GG730301.1| GENE 280 323120 - 323392 339 90 aa, chain - ## HITS:1 COG:ECs3584 KEGG:ns NR:ns ## COG: ECs3584 COG0298 # Protein_GI_number: 15832838 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 90 1 90 90 172 96.0 9e-44 MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGEPRLGQWVLVHVGFAMSIIN EAEARDTLDALQNMFDVEPDVGALLYGEEK >gi|283548476|gb|GG730301.1| GENE 281 323383 - 324255 839 290 aa, chain - ## HITS:1 COG:hypB KEGG:ns NR:ns ## COG: hypB COG0378 # Protein_GI_number: 16130634 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Escherichia coli K12 # 1 290 1 290 290 567 94.0 1e-161 MCTTCGCAEGNLYIEGDEHNPHSAFRSAPFAPAARPALNITGVKTSNFAPSQTAEGDLHY GHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARQHLVLNLVSSPGSGKTTL LTETLMKLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL PLDDNGILFIENVGNLVCPASFDLGERHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKV DLLPYLNFDVEKCIASAREVNPDIEIILISATSGEGMDQWLSWLETQRCA >gi|283548476|gb|GG730301.1| GENE 282 324359 - 324730 140 123 aa, chain - ## HITS:1 COG:ECs3582 KEGG:ns NR:ns ## COG: ECs3582 COG0375 # Protein_GI_number: 15832836 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Escherichia coli O157:H7 # 1 114 1 114 116 194 91.0 4e-50 MHEITLCQRALELIEQQATQHGAKRVTGVWLKIGAFSCVETSALAFYFDLVCRGTLAEGC KLHLEEQEAECWCESCQQYVTLLTQRVRRCPQCNSDMLRIVADDGLQIRRIEIDSNSAPD GDA >gi|283548476|gb|GG730301.1| GENE 283 324929 - 325387 609 152 aa, chain + ## HITS:1 COG:no KEGG:CKO_04081 NR:ns ## KEGG: CKO_04081 # Name: not_defined # Def: formate hydrogenlyase regulatory protein HycA # Organism: C.koseri # Pathway: not_defined # 1 152 1 152 153 276 89.0 2e-73 MTIWEISEKADYIAERHRRLQDQWRIYCNSLVQGITLSKARLHHAMSCAPDKDLCFVLFE HFVIYVTLANGFNSHTIEYYVETKEGDDKQLIAQAELTIDGKVDERISNRDREQVLEHYL EKIASVYDSLYTAVENNMPVNLSQLVEGHNPA >gi|283548476|gb|GG730301.1| GENE 284 325532 - 326143 386 203 aa, chain + ## HITS:1 COG:STM2852 KEGG:ns NR:ns ## COG: STM2852 COG1142 # Protein_GI_number: 16766158 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Salmonella typhimurium LT2 # 1 202 1 202 202 352 98.0 4e-97 MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLKVMLNEKESAPQLCHQCEDAPCA TVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLHIPANANTSKAPPAP PAPARVSTLLDWVPGVRAIAVKCDLCSFDEQGPACVRMCPTKALHLVSNMDIARASKRKR ELTFNTDFGDLTLFQQAQSGDAK >gi|283548476|gb|GG730301.1| GENE 285 326140 - 327966 2505 608 aa, chain + ## HITS:1 COG:STM2851 KEGG:ns NR:ns ## COG: STM2851 COG0651 # Protein_GI_number: 16766157 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Salmonella typhimurium LT2 # 1 608 1 608 608 903 92.0 0 MSAISLINSGVAWFTAAAVLAFLFSFHKPLSGWIAGVGGAVGSLCTAGAGFMVLTNALAV SGVMPFIGHSLQITPLNAIWLITLGLCGLFVSLYNIDWHRHPQVKANGLLINLLMAAAVC AVVASNLGTLVVMAEIMALCAVFLTGCSKEGKLWFALGRIGTLLLAIACYLVWQRYGTLE LRLLDLRTQELPLGSDIWLLGVVGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKV GLLGILSLSLLGGNAPLWWGITLLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIIL LGLGAGVTGIALNQPALIALGLTGGLYHLVNHSLFKSVLFLGAGSIWFRTGHRDIEKLGG IGKRMPVISLAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLGNSGAFVGRFLGPLLAVGL AITGALAVMCMAKVYGVTFLGAPRTKEAENACCAPILMGVSVVALAICCVIGGVAAPWLL PMIASAVPLPLETANTTVSQPLITLLLIACPLLPFIIMAIFKGNRLPSRSRGAAWVCGYD HEQSMVITAHGFAMPVKEAFAPVLKLRKWLNPVSLVPGWQNAAAPVLFRRLALIELAVLV VIVVSRGA >gi|283548476|gb|GG730301.1| GENE 286 327969 - 328892 1275 307 aa, chain + ## HITS:1 COG:STM2850 KEGG:ns NR:ns ## COG: STM2850 COG0650 # Protein_GI_number: 16766156 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 4 # Organism: Salmonella typhimurium LT2 # 1 307 1 307 307 517 96.0 1e-146 MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSIAPADS SWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIYLFAIARFFFSIAGLDTGS PFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNIADTVYHWPAARSIPLILALC ACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFAVLKWGISLKQLVVLQMFVGVFL PWGQMEAFTAGGLLLALVIAVVKLVLGVLVIALFENSMARLRFCATSRVTWAGFGFAFLA FVSLLVA >gi|283548476|gb|GG730301.1| GENE 287 328910 - 330619 2267 569 aa, chain + ## HITS:1 COG:ECs3577_2 KEGG:ns NR:ns ## COG: ECs3577_2 COG3261 # Protein_GI_number: 15832831 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III large subunit # Organism: Escherichia coli O157:H7 # 158 569 1 412 412 864 98.0 0 MSEEKLGQHYLAALHQAFPGVVLDEAWQTKDQLTITVKVNYLPEVVEFLYYKQGGWLSVL FGNDERQLCGHYAVYYVMSMEQGTKCWITVRVEVDANKLEFPSVTPRVPAAVWGEREVRD MYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNN VVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV CGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG FMQFFRVRETSMKMAEILTGARKTYGMNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV DMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVH SEQGCDVISRLKVRINEVYTALNMIDFGLDNLPGGPLAVEGFTYIPHRFALGFAEAPRGD DIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTV VDVRKKKSKVVPYKELERYSIERKNSPLK >gi|283548476|gb|GG730301.1| GENE 288 330629 - 331171 564 180 aa, chain + ## HITS:1 COG:STM2848 KEGG:ns NR:ns ## COG: STM2848 COG1143 # Protein_GI_number: 16766154 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Salmonella typhimurium LT2 # 1 180 1 180 180 337 96.0 8e-93 MFTFIKKVIKTGAQTSSYPLEPIAVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETD LVTNELAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFSLCNCRVC NRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPDCKRQKCLVPSDRIELTRHMKEAS >gi|283548476|gb|GG730301.1| GENE 289 331171 - 331938 876 255 aa, chain + ## HITS:1 COG:STM2847 KEGG:ns NR:ns ## COG: STM2847 COG3260 # Protein_GI_number: 16766153 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase III small subunit # Organism: Salmonella typhimurium LT2 # 1 255 1 255 255 522 98.0 1e-148 MSNLLGPRDANGIPVPMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLS PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARAPGELDEQPA EILHPDMVQPLRVKVDREARRLAGYRYGRQIADDYMTQLGQGEHQVARWLEAENDPRLTE IVTHLNHVVEEARIR >gi|283548476|gb|GG730301.1| GENE 290 331935 - 332345 456 136 aa, chain + ## HITS:1 COG:no KEGG:SARI_00126 NR:ns ## KEGG: SARI_00126 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 136 1 136 136 253 93.0 2e-66 MSETVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGIIDCLEAALTCPWDEYLAWI ATLAEGSEARRKMEGVPKYGEIVIDFNHVQMLARAFDDARAVQTPQQQEWSKLMLSMLHD IHQESAIYLMVRRHRD >gi|283548476|gb|GG730301.1| GENE 291 332371 - 332808 641 145 aa, chain + ## HITS:1 COG:STM2845 KEGG:ns NR:ns ## COG: STM2845 COG0680 # Protein_GI_number: 16766151 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Salmonella typhimurium LT2 # 1 144 12 155 156 260 90.0 7e-70 MMGDDGAGPLLAEMCVANPQGEWIVIDGGSAPENDIVAIRELRPQRLLIVDATDMGLNPG EIRIIDPDDIAEMFMMTTHNMPLNYLVDQLKEDVGEVIFLGIQPDIVGFYYPMTQPIKDA VETVYQRLAGWEGHGGFSELEAPEE >gi|283548476|gb|GG730301.1| GENE 292 332854 - 333105 224 83 aa, chain - ## HITS:1 COG:no KEGG:ROD_30971 NR:ns ## KEGG: ROD_30971 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 12 79 18 85 85 106 82.0 4e-22 MSDDNGKTAVVITKPVRRLKVGYVRKRHEDRNTGFTLRISRHASLTLNGDWLEQAGFPTG TAVNVSVMQGKLIIEQATEEQRV >gi|283548476|gb|GG730301.1| GENE 293 333298 - 333747 404 149 aa, chain + ## HITS:1 COG:ECs3570 KEGG:ns NR:ns ## COG: ECs3570 COG1609 # Protein_GI_number: 15832824 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 91 50 140 337 173 91.0 9e-44 MLARSLAAKTTQTLGLVVTNTLYHGVYFSELLFHTARMAEDKGRQLLLADGKHSAEEERQ AIQYLLDLRCDAIMIYPRFLSVEEIDDIIDALAPYTIPALSSVKIPVTEMIQETIGRLIF MLGDGAFTPPKTFTGELIQRGSVAPPVSR >gi|283548476|gb|GG730301.1| GENE 294 333711 - 333878 88 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTDYLPKHSRIVPDFKVLLLKDFNFHECENGVSSSLVTMTNDNRQRETGGATEPR >gi|283548476|gb|GG730301.1| GENE 295 333893 - 334438 412 181 aa, chain + ## HITS:1 COG:STM2843 KEGG:ns NR:ns ## COG: STM2843 COG1142 # Protein_GI_number: 16766149 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Salmonella typhimurium LT2 # 1 181 1 181 181 305 96.0 4e-83 MNRFIIADANKCIGCRTCEVACVVSHQDNQDCASLTPETFLPRIHVIKGVNVSTATLCRQ CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVVRNSGAGLN VRAEKAEANKCDLCHNREAGPACMEVCPTHALIYVDRNKLEQLSAEKRRRAALDSTASLL F >gi|283548476|gb|GG730301.1| GENE 296 334582 - 336822 1834 746 aa, chain + ## HITS:1 COG:STM2842 KEGG:ns NR:ns ## COG: STM2842 COG0068 # Protein_GI_number: 16766148 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Salmonella typhimurium LT2 # 1 745 1 745 746 1241 84.0 0 MTINNHSGVQLRIRGKVQGVGFRPFVWQLAQRLQLHGDVCNDGDGVVVRLLEEPAVFIAQ LHQHCPPLARIDSVESEPFSWTQRPADFSIRQSAGGTMNTQIVPDAATCPECLTEMNTPG ERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMASFPLCAQCDKEYRDPYDRRFHAQPVA CPECGPHLEWLSAGERAEKEEALQAAVALLKAGGIVAVKGIGGFHLVCDARNDSAVALLR LRKHRPAKPLAVMLPADDGLSEAACRLLNTPAAPIVLVQKRDVAALSEGIAPGLTEVGVM LPANPLQHLLLQEMNCPLVMTSGNLSGRPPAITNAQALEDLREIADGFLLHNREIVQRMD DSVVRESGEMLRRSRGYVPDAVALPPGFRDVPPMLCLGADLKNTFCLVRGEQAVISQHLG DLSDDGIQRQWRDALHLIQNIYDFTPQRIVHDAHPGYVSSQWASEMALPTETVLHHHAHA AASLAEHGWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYCECEHLGGLPAVALAGGD LAAKQPWRNLLAQCLRFVPDWQRFPETSALQQQNWNVLARAIERGINAPQASSCGRLFDA VAAALQCAPESLSYEGEAACALEALASQCAGVEHPVAIPLQDNELDLAVFWQQWLNWQAS PAERAWAFHDALARAFATLMREQAEARGIQTLVFSGGVMHNRLLSSRLAFYLADFTLLFP QRLPAGDGGLSLGQGVIAAARALAEG >gi|283548476|gb|GG730301.1| GENE 297 336900 - 338033 1338 377 aa, chain - ## HITS:1 COG:ygbD KEGG:ns NR:ns ## COG: ygbD COG0446 # Protein_GI_number: 16130618 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Escherichia coli K12 # 1 377 1 377 377 663 89.0 0 MSRGIVIIGSGFAARQLVKNIRKQDATVPLILIAADSMDEYNKPDLSHVISQAQRADDLT RQSAGEFAEQFSLRLFPHTWVTDIDADAHIVKSQDQQWQYDKLVLATGASAFVPPVAGRE LMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL MPPEVSSRLQHRLTDMGVHLLLKSQLQGLEKTESGIRATLDRSRSVEVDAVIAATGLRPE TALARRAGLNINRGVCVDSYLQTSHPDIYALGDCAEINGQVLPFLQPIQLSAMYLAKNLL GGNAPLKLPAMLVKVKTPELPLHLAGETQRRDLNWHIAAEAQGMVARGMNDEGQLRAFVV SEDRMKEAFGLLKTLPV >gi|283548476|gb|GG730301.1| GENE 298 338030 - 339478 1686 482 aa, chain - ## HITS:1 COG:STM2840_1 KEGG:ns NR:ns ## COG: STM2840_1 COG0426 # Protein_GI_number: 16766146 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Salmonella typhimurium LT2 # 1 394 1 394 394 820 97.0 0 MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFV QNLRSEIDLADIDYIIINHAEEDHAGALTELMSCIPDTPIYCTANAIDSINGHHHHPEWN FNVVKTGDSLDIGSGKQLIFVETPMLHWPDSMMTYMTGDAVLFSNDAFGQHYCDERLFND EVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVE LYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGINEVDPNVAVKIFNVARSDKNEVLT NVFRSKGALVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRL QDAGFEMSLSLKAKWRPDLDALELCRQHGREIARQWALAPLPETTVKAATKEDECACAAA AAADLGPSMQCSVCQWIYDPAKGEPLQDVAPGTPWSDVPDNFLCPECSLGKDVFDVLATE AK >gi|283548476|gb|GG730301.1| GENE 299 339667 - 341184 1443 505 aa, chain + ## HITS:1 COG:STM2839 KEGG:ns NR:ns ## COG: STM2839 COG3604 # Protein_GI_number: 16766145 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Salmonella typhimurium LT2 # 1 505 1 506 506 852 90.0 0 MSFSVDVLAGIAIELQSGIGHQDRFQRLIATLRQVLECDASALLRYESRQFIPLAIDGLA QDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACIGLPLFA GQNLIGALTLDGMEPDQFDVFSDEELRLISALAAGALSNALLIEQLESQNMLPGSSAAFG QVTETEMIGLSPNMMQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHEGSPRAVNPLV YLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGNFRADLFHRLSVFPLSVPPLRE RGEDVVLLAGYFCEQCRLRLGLARVVLSPGARNHLLSYGWPGNVRELEHAIHRAVVLARA TRAGDEVILEAQHFALLDESPVPQPDLVAGSPQHRNLREATESFQREMIRRALAQNNHSW AASARALETDVANLHRLAKRLGLKD >gi|283548476|gb|GG730301.1| GENE 300 341181 - 342146 1213 321 aa, chain - ## HITS:1 COG:gutQ_1 KEGG:ns NR:ns ## COG: gutQ_1 COG0794 # Protein_GI_number: 16130615 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 14 205 1 192 192 354 96.0 1e-97 MSDALLNAGRQTLMLELQEASRLPERLGDDFVRAANTIIHCEGKVIVSGIGKSGHIGKKI AATLASTGTPAFFVHPAEAPHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSVALL AMTGKPTSPLGLAAKAVLDISVEREACPMRLAPTSSTVNTLMMGDALAIAVMQARGFNEE DFARSHPAGALGARLLNKVHHLMRRDDAIPQVTLTTSVMDAMLELSRTGLGLVAVCDEQS LVKGVFTDGDLRRWLVGGGALTTQVSEAMTHNGITLQAQSRAIDAKEILMKRKITAAPVV DENGKLTGAINLQDFYQAGII >gi|283548476|gb|GG730301.1| GENE 301 342139 - 342912 828 257 aa, chain - ## HITS:1 COG:STM2837 KEGG:ns NR:ns ## COG: STM2837 COG1349 # Protein_GI_number: 16766143 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 257 1 257 257 479 94.0 1e-135 MKPRQRQAAILEHLQKQGKCSVEELAHYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNK DESDPPIDHKTLINTHKKEQIAEAAVRYIHDGDSIILDAGSTVLQMVPMLTRFSNITVMT NSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMGTDGIDLNA GVTTFNEVFSVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQ ALEAKGIEVIITGETNE >gi|283548476|gb|GG730301.1| GENE 302 342983 - 343342 338 119 aa, chain - ## HITS:1 COG:ECs3562 KEGG:ns NR:ns ## COG: ECs3562 COG4578 # Protein_GI_number: 15832816 # Func_class: K Transcription # Function: Glucitol operon activator # Organism: Escherichia coli O157:H7 # 1 119 1 119 119 202 85.0 1e-52 MVSALITVAAIAWCLQLALGGWQISRFNRAFDKLCQRGRVGVGRSGGRFKPRVVVAIALD EQQRVSDTLFMKGLTVFARPGKIATIMGKHLDDLQPDVIFPHDPLAQNALSLALKLKHG >gi|283548476|gb|GG730301.1| GENE 303 343444 - 344223 906 259 aa, chain - ## HITS:1 COG:STM2835 KEGG:ns NR:ns ## COG: STM2835 COG1028 # Protein_GI_number: 16766141 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Salmonella typhimurium LT2 # 1 259 1 259 259 480 97.0 1e-135 MNQVAVVIGGGQTLGAFLCRGLATEGYRVAVVDIQSDKAANVAQEINAEFGAGTAYGFGA DATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCA REFSRLMIRDGVQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVH SLMLGNLLKSPMFQSLLPQYATKLGLKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASS KASYCTGQSINVTGGQVMF >gi|283548476|gb|GG730301.1| GENE 304 344241 - 344603 422 120 aa, chain - ## HITS:1 COG:ECs3560 KEGG:ns NR:ns ## COG: ECs3560 COG3731 # Protein_GI_number: 15832814 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIA # Organism: Escherichia coli O157:H7 # 1 118 1 118 123 213 85.0 1e-55 MTVIYQTTITRIGQSAPDALCDQMLITFREGAPADIEEFCFIHCHGDLNGSLHAGIQFEL GQHRYPVTAVGSVAEQNLRELGHITLRFDGLSEAEFPGTVHVAGPVPDSIAPGCILKFVA >gi|283548476|gb|GG730301.1| GENE 305 344617 - 345588 1167 323 aa, chain - ## HITS:1 COG:STM2833 KEGG:ns NR:ns ## COG: STM2833 COG3732 # Protein_GI_number: 16766139 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIBC # Organism: Salmonella typhimurium LT2 # 1 323 1 323 323 565 93.0 1e-161 MTRIRIEKGTGGWGGPLELDAVSGKKIVYITAGTRPAIVDKLANLTGWQAVDGFKEGEPP ENEIGVAIIDCGGTLRCGIYPKRRIPTVNIHATGKSGPLAQYIVEDIYVSGVKEENITVV GEASVSPQPAGSTIGRDYDASKKITEQSDGLLAKVGMGMGSAVAVLFQAGRDTIDTVLKT ILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVTLALICSFPLLSPFLGPGAVI AQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPSVL VSRFLTGAPTVLIAWFVSGFIYQ >gi|283548476|gb|GG730301.1| GENE 306 345585 - 346148 696 187 aa, chain - ## HITS:1 COG:STM2832 KEGG:ns NR:ns ## COG: STM2832 COG3730 # Protein_GI_number: 16766138 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system sorbitol-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 187 1 187 187 352 97.0 2e-97 MIDTITLGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQQRIERFAQRC AGNPLSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPG ELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWVTDFTTAIFEKKMGIQLEQKV HLAGATS >gi|283548476|gb|GG730301.1| GENE 307 346414 - 347493 1183 359 aa, chain + ## HITS:1 COG:STM2831 KEGG:ns NR:ns ## COG: STM2831 COG2951 # Protein_GI_number: 16766137 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-bound lytic murein transglycosylase B # Organism: Salmonella typhimurium LT2 # 1 359 1 359 359 692 93.0 0 MFKRRYVALLPLFVLLAACSSKPKPPETQTTTGTPSGGFLLEPQHNVMLTGGDFANNPNA QQFIEKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDRQAPTTQPPAGPNGAWLRYRKQFI TPDNVQNGVAFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLS FNYPRRAEYFSGELETFLLMARDESDDPLDLKGSFAGAMGYGQFMPSSYKEYAVDFNGDG HINLWDPVDAIGSVANYFKGHGWVKGDTVAVPANGQAPGLANGFKTQYSISQLAAAGLTP QQSLGNHQQASLLRLDVGTGYQYWYGLPNFYAITRYNHSTHYAMAVWQLGQAVALARVQ >gi|283548476|gb|GG730301.1| GENE 308 347688 - 348185 320 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 3 157 746 898 904 127 47 6e-28 MTDSELMQLSEQVGLALKARGATVTTAESCTGGWVAKAITDIAGSSAWFERGFVTYSNEA KVQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADFAVSISGIAGPDGGSEGKPVGTV WFAFASASGEGITRRECFSGDRDAVRRQATAYALQTLWQHFLQNT >gi|283548476|gb|GG730301.1| GENE 309 348278 - 349342 1574 354 aa, chain + ## HITS:1 COG:STM2829 KEGG:ns NR:ns ## COG: STM2829 COG0468 # Protein_GI_number: 16766135 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Salmonella typhimurium LT2 # 1 354 1 353 353 649 97.0 0 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQP DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIG QGKANATNWLKENPATAKEIEKKLRELLLNNQDSTPDFSVDDSGEDVAETNEDF >gi|283548476|gb|GG730301.1| GENE 310 349415 - 349915 459 166 aa, chain + ## HITS:1 COG:oraA KEGG:ns NR:ns ## COG: oraA COG2137 # Protein_GI_number: 16130605 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 166 1 166 166 256 80.0 2e-68 MTDATPRRSAYSRLLDRAVRILAMRDHSEQELRRKLAAPVMGKNGPEDIDASAEDYDKVI AWCIESRYLDDDRFVQQFIASRSRKGYGPARVRQELSQKGISREAIERAMRECEIDWAVL AREQAIRKYGEPLPVDFSDKVKVQRFLLYRGYLMEDIQAIWRNFDD >gi|283548476|gb|GG730301.1| GENE 311 350043 - 352670 2890 875 aa, chain + ## HITS:1 COG:STM2827 KEGG:ns NR:ns ## COG: STM2827 COG0013 # Protein_GI_number: 16766133 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 875 1 875 876 1647 95.0 0 MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYS RATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENW FALPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCG PCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMG LERIAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVV PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVL KTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKV DEEGFEAAMEEQRRRAREASGFGADYNAMIRVDGASEFKGYEHLELNGKVTALFVDGKAV DAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGAGFAFAVSDTQKYGQAIGHIGKLSAG SLKIGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVNDKVLRFDFSH TEAMKPAEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDDHVRVLSMGD FSTELCGGTHASRTGDIGLFRIVSESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQL LKGDSQNIGDKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAD VEPKMLRTMVDDLKNQLGSTVIVLATVVEGKVSLIAGVSKDVTDRVKAGELVGMVAQQVG GKGGGRPDMAQAGGTDAAALPAALASVKGWVSAKL >gi|283548476|gb|GG730301.1| GENE 312 352909 - 353094 204 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855109|ref|ZP_02477881.1| 30S ribosomal protein S1 [Haemophilus parasuis 29755] # 1 60 1 60 61 83 61 2e-14 MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSS Y >gi|283548476|gb|GG730301.1| GENE 313 354268 - 354834 372 188 aa, chain + ## HITS:1 COG:ECs3552 KEGG:ns NR:ns ## COG: ECs3552 COG0637 # Protein_GI_number: 15832806 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 341 89.0 5e-94 MYERYAGLIFDMDGTILDTEPTHRKAWHEVLGHYGLRFDEQAMVALNGSPTWRIAQAVIE LNHADLDPHALAREKTDKVRSMLLDSVQPLPLVEVVKAWHGRRPMSVGTGSESAIAEALL AHLGLRRYFDAVVAADHVQRHKPAPDTFLLCAERMGVVPARCVVFEDADFGLQAARAAGM DAVDVRLL >gi|283548476|gb|GG730301.1| GENE 314 354975 - 355259 170 94 aa, chain + ## HITS:1 COG:yqaA KEGG:ns NR:ns ## COG: yqaA COG1238 # Protein_GI_number: 16130601 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 94 49 142 142 156 93.0 7e-39 MGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLRRYGAVTLLLSWMPVVGDLLCLLAGWM RISWGPVLFFLCLGKALRYVVVAAVTTQGIMWWH >gi|283548476|gb|GG730301.1| GENE 315 355337 - 356893 1640 518 aa, chain + ## HITS:1 COG:STM2818 KEGG:ns NR:ns ## COG: STM2818 COG2918 # Protein_GI_number: 16766129 # Func_class: H Coenzyme transport and metabolism # Function: Gamma-glutamylcysteine synthetase # Organism: Salmonella typhimurium LT2 # 1 518 1 518 518 1033 94.0 0 MIPDVSQALAWLENHPQALKGIQRGLERETLRVNADGSLATTGHPEVLGSALTHKWITTD FAEALLEFITPPGDDIHKMLTFMRDLHRYTARNLGDERMWPLSMPCYIAEGQDIELAQYG TSNTGRLKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGVTEGEDAKEKISAGY FRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPFEKTDCGMYYLPYATSLRLSDLG YTNKSQSNLGITFNDLHEYVAGLKRAIKTPSAEYAAIGLEKDGKRLQINSNVLQIENELY APIRPKRVTRRGETPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALA DAPEMSSDELLCTRTNWNRVILEGRKPGLTLGIGCETAQFPLPKVGKDLFRDLKRVAQTL DSIHGGEEYQKVCDELVACFDNPELTFSARILRSMIDQGIGGTGKALGEAYRNLLREEPL EMLQEEEFIAETEASKRRQQEIEAADTEPFSVWLEKHA >gi|283548476|gb|GG730301.1| GENE 316 357043 - 357558 605 171 aa, chain + ## HITS:1 COG:STM2817 KEGG:ns NR:ns ## COG: STM2817 COG1854 # Protein_GI_number: 16766128 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Salmonella typhimurium LT2 # 1 171 1 171 171 343 96.0 1e-94 MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCIPNKEVMPEKGIHTLEHLF AGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVQDQNQI PELNIYQCGTYQMHSLSEAQDIARHILEHDVRVNSNEELALPKEKLQELHI >gi|283548476|gb|GG730301.1| GENE 317 357661 - 359187 1585 508 aa, chain - ## HITS:1 COG:STM2815 KEGG:ns NR:ns ## COG: STM2815 COG0477 # Protein_GI_number: 16766126 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 498 1 498 512 891 93.0 0 MQQQKPLEGAQLVIMTIALSMATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGV ANAISIPITGWLAKRVGEVKLFMWSTIAFAIASWACGMSNSLNMLIFFRVIQGIVAGPLI PLSQSLLLNNYPPARRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGAA VVLMTLQTLRGRETKTEQRRIDAIGLALLVIGIGSLQIMLDRGKELDWFASQEIIILTVV AVVAISFLIVWELTDEHPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYG YTATWAGLASAPVGVIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAWTFEPGMD FGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTM WTNRESLHHAQLTESVNPYNPNAQAMYNQLQGLGMSKEQASGWLAQQITNQGLIISANEI FWMSAGIFLVLLGLVWFANAGGGGGGAH >gi|283548476|gb|GG730301.1| GENE 318 359204 - 360376 1245 390 aa, chain - ## HITS:1 COG:STM2814 KEGG:ns NR:ns ## COG: STM2814 COG1566 # Protein_GI_number: 16766125 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Salmonella typhimurium LT2 # 1 390 1 390 390 637 92.0 0 MSANAETQTPQQPVKKNGKRKSMLLLLTLLFIIIAVAYGIYWFLVLRHVEETDDAYVAGN QVQIMAQVSGSVTKVWADNTDFVKQGDVLVTLDQTDAKQAFEKAKTALASSVRQTHQLMI NSKQLQASIEVQRTALAQAQSDFNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQ YNANQAMILGSKLEDQPAVQQAATEVRNAWLALERTKIVSPMTGYVSRRSVQPGAQISPT TPLMAVVPATNLWVDANFKETQLAHMRIGQPATVISDIYGDDVKYTGKVVGLDMGTGSAF SLLPAQNATGNWIKVVQRLPVRIELDAQQLAQHPLRIGLSTLVTVDTANRDGQILASQVR TTPVSESNAREINLDPVNKMIEEIVRANAG >gi|283548476|gb|GG730301.1| GENE 319 360504 - 361034 579 176 aa, chain - ## HITS:1 COG:STM2813 KEGG:ns NR:ns ## COG: STM2813 COG1846 # Protein_GI_number: 16766124 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 176 1 176 176 294 94.0 5e-80 MDSSFTPIEQMLKFRASRYEEFPYQEVLLTRLCMHMQGKLLENRNKMLKAQGINETLFMA LITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEK GHAFLQEVLPPQHNCLHQLWSSLSTTEKDQLEQITRKLLTRLDQMEQDGAVLEALR >gi|283548476|gb|GG730301.1| GENE 320 361125 - 361460 418 111 aa, chain - ## HITS:1 COG:no KEGG:CKO_04032 NR:ns ## KEGG: CKO_04032 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 111 1 111 111 163 88.0 2e-39 MSYEVLLLGLLVGCVNYCFRYLPLRLGAGNVRPARRGATGILLDTIGIASICALLVVSTA PEVMHDARRFVPTLVGFVILGASFYKTRSIIIPTLLSALGYGLAWKMLVGL >gi|283548476|gb|GG730301.1| GENE 321 361450 - 362187 572 245 aa, chain - ## HITS:1 COG:ECs3544 KEGG:ns NR:ns ## COG: ECs3544 COG1296 # Protein_GI_number: 15832798 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 381 86.0 1e-106 MDSPIPQSGSRSATLTEGFKDSLPIVISYIPVAFAFGLNATRLGFTPVESVFLSCIIYAG ASQFVITTMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRIAQRLSKPKSALWAFGLTDE VFAAATAKLVRDNRRWSENWMIGIALCSWASWVFGTAIGAFSGSGLLKDYPAVEAALGFM LPALFMSFLLASFQRKQALCVTVALTGALAGVILFSIPAAILLGIVCGCLTALLQSFWQG GPDEL >gi|283548476|gb|GG730301.1| GENE 322 362310 - 363494 1272 394 aa, chain - ## HITS:1 COG:ECs3543 KEGG:ns NR:ns ## COG: ECs3543 COG0477 # Protein_GI_number: 15832797 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 394 1 394 394 569 91.0 1e-162 MTKTTQGLSPSLILLMSIATGLAVASNYYAQPLLDTIARNFSLSASTAGFIVTAAQLGYA AGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLGMLILGTALTGLFSVVAQILV PLAATLATPDKRGKVVGTIMSGLLLGILLARTVAGLLANLGGWRTVFWVASILMSLMAIA LWRGLPKMKSDTHLNYPQLLGSVFSLFIHDKLLRTRALLGCLTFANFSILWTSMAFLLAA PPFNYSEGTIGLFGLAGAAGALGARPAGGFADKGKSHLTTTTGLLLLLLSWWAIWSGHSS VPMLIIGILVLDLTVQGVHITNQTVIYRIHPDARNRLTAGYMTSYFIGGAAGSLISASAW QHAGWAGVCLAGTTVAILNLLVWWRGFHRQEAVN >gi|283548476|gb|GG730301.1| GENE 323 363690 - 364685 1229 331 aa, chain - ## HITS:1 COG:STM2811 KEGG:ns NR:ns ## COG: STM2811 COG2113 # Protein_GI_number: 16766122 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Salmonella typhimurium LT2 # 1 331 1 331 331 628 94.0 1e-180 MRHTLLFATAFATLVSTSAFAADLPGKGITVQPIQSTISEESFQTQLVARALEKLGYTVN KTSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVTGAAQGYLID KKTAEQYKITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKTV EVSHGNYAAMMADTITRFKEGKPILYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKD IDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHDGKAS EADVQGHVDGWIKAHQQQFDGWVNEALAAQK >gi|283548476|gb|GG730301.1| GENE 324 364754 - 365818 1392 354 aa, chain - ## HITS:1 COG:STM2810 KEGG:ns NR:ns ## COG: STM2810 COG4176 # Protein_GI_number: 16766121 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 354 1 354 354 577 94.0 1e-164 MADQTNPWDTTPAADSAAQTTDAWSTPSATPTDGGSADWLNSAPAPAPEHFNIMDPFHKT LIPLDSWVTEGIDWVVTHFRPVFQGIRVPVDYILNGFQQLLLGMPAPVAIILFALIAWQI SGVGMGVATLISLIAIGAIGAWSQAMITLALVLTALLFCVVIGLPMGIWLARSPRAAKIV RPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR LDMGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLITRPFTK >gi|283548476|gb|GG730301.1| GENE 325 365811 - 367013 1040 400 aa, chain - ## HITS:1 COG:STM2809 KEGG:ns NR:ns ## COG: STM2809 COG4175 # Protein_GI_number: 16766120 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 400 1 400 400 731 95.0 0 MAIKLEVKNLYKIFGEHPQRAFKYIEKGLTKEQILEKTGLSLGVKDASLAIEEGEIFVIM GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIARISDAELREVRRKKIAMVFQSFALMPH MTVLDNTAFGMELAGVDADERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTVVFISHDLDEAMRIGDRIAIMQN GEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDISRRSPEGLIRKTPGVGPRSAL QLLQDKDREYGYVIERGNKFVGVVSIDSLKTALSQAQGIEAALINEPLAVDAQTPLSELL SHVGQAPCAVPVVDEEQQYVGVISKRMLLQALDREGANNG >gi|283548476|gb|GG730301.1| GENE 326 367368 - 368327 954 319 aa, chain - ## HITS:1 COG:STM2808 KEGG:ns NR:ns ## COG: STM2808 COG0208 # Protein_GI_number: 16766119 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Salmonella typhimurium LT2 # 1 319 1 319 319 573 89.0 1e-163 MTLSRVSAINWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVF TGLTLLDTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTDVDA AYAWSEENNPLQRKAQIILAHYASDNPLQKKIASVFLESFLFYSGFWLPMYFSSRGKLTN TADLIRLIIRDEAVHGYYIGYKYQKGLAHISESAREELKNFALDLLMELYDNEAQYTDEL YAETGWADDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALSPNAEENHDFFSGS GSSYVMGKAVETEDDDWNF >gi|283548476|gb|GG730301.1| GENE 327 368338 - 370482 2226 714 aa, chain - ## HITS:1 COG:STM2807 KEGG:ns NR:ns ## COG: STM2807 COG0209 # Protein_GI_number: 16766118 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 714 1 714 714 1345 90.0 0 MATTTAERVMQQSLDYHALNAMLNLYDQAGRIQFDKDHQAVDAFFAAHVRPNSVTFASQQ ERLEVLVSEGYYDESVLSRYDRTFVITLFARAHASGFRFQTFLGAWKFYTSYTLKTFDGK RYLEDFEDRVTMVALTLAQGDETLAMQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFL LRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLED AFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVAFRLA KENAQMALFSPYDVERLYGKPFGDIAVSERYDELLADERVRKKYINARDFFQRLAEIQFE SGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASTYDDALGYTQIGHDISCNLGSL NIAHTMDSPDFGRTVETAVRGLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAR EGIAYGSPEGLDFTNLYFYTITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQG DWQPKTAKVRALFAASGITLPTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATS SIHPIVSKVEIRKEGKIGRVYYPAPFMTNENLALYQDAYEIGPQKIIDTYAEATRHVDQG LSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQLALEGTEIEGCVSCAL >gi|283548476|gb|GG730301.1| GENE 328 370455 - 370865 267 136 aa, chain - ## HITS:1 COG:ECs3537 KEGG:ns NR:ns ## COG: ECs3537 COG1780 # Protein_GI_number: 15832791 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Escherichia coli O157:H7 # 1 135 1 135 136 241 87.0 2e-64 MSQLVYFSSSSENTHRFIQRLGLPAIRIPLNERERIRVNEPYILIVPSYGGGGTAGAVPG QVIRFLNDPHNRALIRGVIASGNRNFGDAYGRAGEVISQKCGVPWLWRFELMGTQRDIDN VRQGVSEFWQRQPQNV >gi|283548476|gb|GG730301.1| GENE 329 370862 - 371107 247 81 aa, chain - ## HITS:1 COG:STM2805 KEGG:ns NR:ns ## COG: STM2805 COG0695 # Protein_GI_number: 16766116 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Salmonella typhimurium LT2 # 1 80 1 80 81 138 80.0 2e-33 MRIVIYTRNDCVQCHATKRAMESRGFDFEMVNIDLQPDMADSLRDQGFRQLPVVVAGETS WSGFRPDMINRLRPQPHMASV >gi|283548476|gb|GG730301.1| GENE 330 371389 - 371820 528 143 aa, chain - ## HITS:1 COG:STM2804 KEGG:ns NR:ns ## COG: STM2804 COG2128 # Protein_GI_number: 16766115 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 143 1 143 143 243 84.0 1e-64 MTMLRQPYYELSPEIYNALVQASKALENCALEPVLTELVYLRVSQINGCAFCLEMHSKAL RKAGVAQPKLDALAGWRVSHHFSEQERAALAWAESVTDIASTHAEDDVYLPLLDHFSAKE ISDLTFAISLMNCFNRLAVGMRM >gi|283548476|gb|GG730301.1| GENE 331 371911 - 373245 838 444 aa, chain + ## HITS:1 COG:STM2803 KEGG:ns NR:ns ## COG: STM2803 COG1167 # Protein_GI_number: 16766114 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Salmonella typhimurium LT2 # 1 443 1 443 444 696 78.0 0 MPRYQQIARQLKNAIETGELKPGARLPSSRTWSQELGVSRSTVENAYAELVAQGWLARRG QAGTFVSEQLRPETSPATPAIFAGENPKPQPFQMGLPALDLFPRDVWARVMGRRLRTQTR FDLAVGDVCGERVLRQAIVDYLRVSRSIECRPEQVFITSGYAASMTLILRALSQPGEGMW VEDPGFPLIRPVVAQERIALMPVPVDVNGLDVCAGIRDYPQARFVLLTPAHQSPLGVALS LKRRHQLLEWAARAQAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKSMFPAL RTAWLVVPMTQVERFRQQAALTACSVPVLWQQTLADFMRDGHFWRHLKRMRQHYAQRRQW MENALTEHGFSVVPQEGGIQLVMTVDGDDVALVREANRAGLAVQALSQWRITSTGEGGIL LSFTNISSAEMAQQAAYRLRLALT >gi|283548476|gb|GG730301.1| GENE 332 373369 - 373719 443 116 aa, chain + ## HITS:1 COG:no KEGG:G2583_3317 NR:ns ## KEGG: G2583_3317 # Name: ygaC # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 114 1 114 114 211 90.0 8e-54 MYLRPDEVARVLEKVGFTVDVVTQKTYGYRRGDNYVYVNREARMGRTALVIHPTLKERSS SLAEPATDIKTCDHYQQFPLYLAGDTHEHYGIPHGFSSRIALERYLSGLFGDVNSN >gi|283548476|gb|GG730301.1| GENE 333 373756 - 374205 422 149 aa, chain - ## HITS:1 COG:no KEGG:CKO_04017 NR:ns ## KEGG: CKO_04017 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 149 22 170 170 254 91.0 6e-67 MFSPQSRLRHAVADTFAMVVYCSVVNMLIEIFLSGMSFEQSLYSRLVAIPVNILIAWPYG MYRDLFMRAARKATQAGWAKNLADVLSYVTFQSPVYVIILLTVGADWHQITAAVSSNIVV SMLMGAVYGYFLDYCRRLFKVSSYHQAKA >gi|283548476|gb|GG730301.1| GENE 334 374761 - 375162 398 133 aa, chain + ## HITS:1 COG:STM2799 KEGG:ns NR:ns ## COG: STM2799 COG2916 # Protein_GI_number: 16766110 # Func_class: R General function prediction only # Function: DNA-binding protein H-NS # Organism: Salmonella typhimurium LT2 # 1 133 1 133 133 175 80.0 2e-44 MSSMLKNLNNIRSLRAMAREFSVDVLEDMLEKFRVVTKERRDEEEQLQRQRAEQQEKINN LLALMQADGIDPEELLSMTPASSRVVKKRQPRPAKYRFTDFNGETKTWTGQGRTPKPIVQ ALAAGKSLDDFLI >gi|283548476|gb|GG730301.1| GENE 335 375198 - 375377 237 59 aa, chain - ## HITS:1 COG:no KEGG:Ent638_3148 NR:ns ## KEGG: Ent638_3148 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 59 1 59 59 97 83.0 2e-19 MFKPGDLVQPRMGGPKLKVVEVNDDQIVAVQASNESGEKFTLKAADVTRYSEDGDFGVC >gi|283548476|gb|GG730301.1| GENE 336 375458 - 375985 510 175 aa, chain - ## HITS:1 COG:STM2798 KEGG:ns NR:ns ## COG: STM2798 COG0607 # Protein_GI_number: 16766109 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Salmonella typhimurium LT2 # 1 175 1 175 175 277 81.0 9e-75 MSIGTISPREAQTLLAQGAKLIDIRDADEYLHEHIPEAHLAPLPALEQGPLPANLRAERV IFHCQSGKRTQNAATKLSAIAAPAQVWLLEGGIDGWKAAGLPVAKDSSQPLPLMRQVQIA AGSLALIGVILGYAVNGAFFLLSGFVGAGLILAGVTGFCGMARLLDKMPWNRRTH >gi|283548476|gb|GG730301.1| GENE 337 375995 - 376294 300 99 aa, chain - ## HITS:1 COG:STM2797 KEGG:ns NR:ns ## COG: STM2797 COG0640 # Protein_GI_number: 16766108 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 99 1 99 99 151 90.0 2e-37 MTELEQLQASAEQAAALLKAMSNPKRLLILCMLCGSPGTSAGELARATGLSPSATSQHLA RMREEGLIDSQRDAQRILYSIKNAAVNSLIATLKTLYCP >gi|283548476|gb|GG730301.1| GENE 338 376479 - 376637 262 52 aa, chain + ## HITS:1 COG:ECs3527 KEGG:ns NR:ns ## COG: ECs3527 COG0401 # Protein_GI_number: 15832781 # Func_class: S Function unknown # Function: Uncharacterized homolog of Blt101 # Organism: Escherichia coli O157:H7 # 1 52 1 52 52 75 94.0 2e-14 MGFWRIVFTIILPPLGVLLGKGFGWAFILNIVLTLLGYIPGLIHAFWVQTRD >gi|283548476|gb|GG730301.1| GENE 339 376634 - 377326 937 230 aa, chain - ## HITS:1 COG:STM2794 KEGG:ns NR:ns ## COG: STM2794 COG1802 # Protein_GI_number: 16766105 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 374 90.0 1e-104 MTAIPQPTAIDGYRWLKNDIIRGIYQPDEKLRMSLLTSRYELGVGPLREALSQLVAERLV TVVNQKGYRVAPMSEQELLDIFDARANMEAMLVALAIERGDDAWEAEILARAHMLGKLEA VDASEQMLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRKTVLSVEML EDKHDQHQTLTEAIMARDAARASELMRQHLLTPIPIIQQAMSGKLLMAKS >gi|283548476|gb|GG730301.1| GENE 340 377372 - 378772 1738 466 aa, chain - ## HITS:1 COG:STM2793 KEGG:ns NR:ns ## COG: STM2793 COG1113 # Protein_GI_number: 16766104 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Salmonella typhimurium LT2 # 1 464 1 464 466 781 94.0 0 MGQVSQSHDLGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVM IMRMLAEMAVATPDTGSFSTYADKAIGPWAGYTIGWLYWWFWVLVIPLEANIAAIILHSW VPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFITLGAVAISGFYPY AEVSGVSRLWDQGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNS VIWRISIFYLCSIFVVVALIPWNMPGLKEAGSYRSVLELLHIPHAKLIMDCVILLSVTSC LNSALYTSSRMLYSLSRRGDAPAFMGKTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVF KFLIDSSGAIALLVYLVIAISQLRMRKILLARGGEIKLKMWLYPWLTWLVIAFIIFVLVV MLFRPAQQLEVISTGLLAIGIICTVPIMSRWKKLLSWQKAPLHNTH >gi|283548476|gb|GG730301.1| GENE 341 378913 - 380196 1520 427 aa, chain - ## HITS:1 COG:ECs3523 KEGG:ns NR:ns ## COG: ECs3523 COG0160 # Protein_GI_number: 15832777 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Escherichia coli O157:H7 # 1 426 1 426 426 805 92.0 0 MSTNQELMQRRSNAVPRGVGQIHPIFAERAENCRVWDVEGREFLDFAGGIAVLNTGHLHP QVVSAVEAQLKKLSHTCFQVLAYEPYLELCEIMNKKVPGDFAKKTLLVTTGSEAVENAVK IARAATKRTGTIAFSGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE DDAIASIHRIFKNDAAPEDVAAIVIEPVQGEGGFYAASPAFMQRLRAICDEHGIMLIADE VQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRADVMDAIPPGGLGGTYAG NPIACAAALAVLNIFEQENLLQKANDLGQTLREGLLAIAETHREIGDVRGLGAMVAIELF EDGDHTKPDAKLTAEVVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLDIIAQC FAEAKRG >gi|283548476|gb|GG730301.1| GENE 342 380222 - 381670 1827 482 aa, chain - ## HITS:1 COG:STM2791 KEGG:ns NR:ns ## COG: STM2791 COG1012 # Protein_GI_number: 16766102 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 482 1 482 482 879 91.0 0 MQLNDPTLFRQQALIDGNWRDANSGETIAVTNPANGQQLGSVPKMGADETREAINAANRA LPAWRALTAKERANILRRWFNLMIEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFA EEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK PASQTPYSALALAELANRAGIPAGVFSVVTGSASEVGNELTGNPLVRKLSFTGSTEIGRQ LMQQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDG VYDQFAEKLEQAVSKLRLGDGLQPDVTTGPLIDEKAVAKVQEHIADALDKGARIIAGGKP HALGGNFFQPTILVDVPDNAKVAKEETFGPLAPLFRFKDEADVITQANDTEFGLAAYFYA RDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCI GL >gi|283548476|gb|GG730301.1| GENE 343 381694 - 382962 1254 422 aa, chain - ## HITS:1 COG:ECs3521 KEGG:ns NR:ns ## COG: ECs3521 COG0579 # Protein_GI_number: 15832775 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Escherichia coli O157:H7 # 1 422 23 444 444 795 91.0 0 MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGS LKAQFCLAGNRATKAFCDQNGIRYDVCGKMLVATSSLEMERMRALWDRTAANGLEREWLN AQELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQAKGGEIVYNAEVSALKEHAAG VIVHTRQGQEYEGATLISCSGLMADRLVKMLGVEPGFIICPFRGEYFRLAPEHNQIVNHL IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLSDMLEIFGSSGIRR VLQNNLRSGLGEMKNSLCKSGYLRLVQKYCPSLTLKDLQPWPAGVRAQAVSPDGKLIDDF LFVTTPRSIHTCNAPSPAATSALPIGAHIVGKVHALLENQSNPGRTLRAARSVETLHAAF TR >gi|283548476|gb|GG730301.1| GENE 344 382982 - 383959 1169 325 aa, chain - ## HITS:1 COG:no KEGG:SFV_2844 NR:ns ## KEGG: SFV_2844 # Name: not_defined # Def: hypothetical protein # Organism: S.flexneri_8401 # Pathway: not_defined # 1 325 36 360 360 587 90.0 1e-166 MNALTAVQPNAEDPAQHYSGFTLKPSVQSPRLLELTFSAETTEQFLQAVAQWPVQALEYK SFLRFKVGKILDDLCGNQLQPLLLKTLLDRAEGALLINAVGVDDVAQAEEMVKLATAVAH LIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYLEEITDYVLMMKIDE QNMTGGNSLLLHLDDWEHLDRYFTHPLARRAMRFAAPPSKNVSKDVFHPVFDVDQQGRPV MRYIDQFVQPKDYEEGVWLSDLSDALETSKSIISVPVPVGKFLLINNLFWLHGRDRFTSH PDLRRELMRQRGYFAYATHHYQTHQ >gi|283548476|gb|GG730301.1| GENE 345 384217 - 384819 616 200 aa, chain - ## HITS:1 COG:RSc3331 KEGG:ns NR:ns ## COG: RSc3331 COG1028 # Protein_GI_number: 17548048 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Ralstonia solanacearum # 1 199 1 201 201 256 71.0 2e-68 MKIVIVGASGTVGRAVTETLSRKHETIRVGRTQGDYQVDITSQESVEALFEKVGRVDAVV SATGNLFFGPLSTMTDRDFNQGLQDKLLGQVRLALTGQHYLNDGGSITLISGIIAHEPIA QGANAATINAGLEGFVRAAACELGRGLRINLISPTVLSESAEAYDGFFPGFASVPAATVA NAYRRSVEGIQTGRIYKVGY >gi|283548476|gb|GG730301.1| GENE 346 384918 - 385808 827 296 aa, chain + ## HITS:1 COG:RSc3332 KEGG:ns NR:ns ## COG: RSc3332 COG0583 # Protein_GI_number: 17548049 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 1 292 1 292 298 405 69.0 1e-113 MDKLRGMETFIAVVESGSFTSAATRLEMSAVMVGKYITQLEAQLGTRLLERNTRRQSLTD AGRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAATFLQAWPE VRIELDLTNRMVDLVNEGVDLAIRIGDIHQTDVVAKYLCPYRMAICASPDYLARHGTPRT PADLVDHLCLSHTVWTARNEWMLPGAAGEVRWKRDAILRCNDGHGLRMAAVAGAGLLLQP EVLLAEELATGRLVRVLEAFTPQPRPIHLLWRQDLRALPKLTRFVGHVLSAVQELR >gi|283548476|gb|GG730301.1| GENE 347 385843 - 387357 1877 504 aa, chain - ## HITS:1 COG:STM2788 KEGG:ns NR:ns ## COG: STM2788 COG3333 # Protein_GI_number: 16766099 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 504 1 504 504 831 95.0 0 MDTWIYLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPINGVAILLPLAFALHLPAE SALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPMAQQGRGGVALSISAVSSF FGSLIAIGGIILFAPALAQWSLAFGPAEYFALMVFAIACLGSMMAQNPLKSFLAALIGLG LATVGVDANTGVYRFTFDSVHLSDGVQFIVVVIGLFSVSEILLMLEHTSSGQTLVRKTGR MLFNAKEGAQCVGATLRSSVIGFFVGVLPGAGATIASAITYMTEKKLSGNSDSFGKGDIR GVAAPEAANNASACGSFIPMLTLGVPGSGTTAVMMGALTLYNITPGPAMFTEQPDIVWGL IAALLIANVMLLVMNIPLIGLFTRMLTIPLWFLVPAIAAVSAVGVYAVHSTTFDLVLMVA LGVLGYILRKMHFPMSPLILGFVLGEMLEQNLRRALSISNGSMDILWASGVAKVLLVMAV LVIVIPPVLRMIRKRNNKPQVDIG >gi|283548476|gb|GG730301.1| GENE 348 387368 - 387799 591 143 aa, chain - ## HITS:1 COG:no KEGG:SG2692 NR:ns ## KEGG: SG2692 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: Two-component system [PATH:seg02020] # 1 142 2 143 144 210 90.0 2e-53 MSDRIFAGIWLLLCIAGLFVAWQITSEYSYEPVGPRPFPLGIISLMLVCAVALLLRHPDT ISWPRRHVLQKLLAMVIVLLMYAWGFEWLGFPIATAILTVVIGMLFGATIPAAGISGAVL GILLWYAFDRLLDVTLPLGAWLG >gi|283548476|gb|GG730301.1| GENE 349 387817 - 388794 1278 325 aa, chain - ## HITS:1 COG:STM2786 KEGG:ns NR:ns ## COG: STM2786 COG3181 # Protein_GI_number: 16766097 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 325 1 325 325 625 95.0 1e-179 MKKQLLRTLTASILLMSTSVLAQEAPSRTECIAPAKPGGGFDLTCKLIQVSMMETGAIEK PMRVTYMPGGVGAVAYNAIVAQRPAEAGTVVAFSGGSLLNLSQGKFGRYGVDDVRWLASV GTDYGMIAVRQDSPWKTLKDLLTAMEKDPNSVVIGAGASIGSQDWMKSALLAQKANVDPH KMRYVAFEGGGEPVTALMGNHVQVVSGDLSEMVPYLSGDKIRVLAVFSEERLPGQLANVP TAKEQGYDLVWPIIRGFYVGPKVSDAEYQWWVDTFNKLQQTDEFKKQRDLRGLFEFNMSG KQLDEYVKKQVTDYREQAKAFGLAK >gi|283548476|gb|GG730301.1| GENE 350 388948 - 389622 774 224 aa, chain + ## HITS:1 COG:STM2785 KEGG:ns NR:ns ## COG: STM2785 COG0745 # Protein_GI_number: 16766096 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 224 1 224 224 389 94.0 1e-108 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGL EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSA GQVQGIQQLGELAFHDEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFSL SDEVSPESIELYIHRLRKKLQGSDVRIATLRGLGYVLERSDEVG >gi|283548476|gb|GG730301.1| GENE 351 389609 - 391021 1234 470 aa, chain + ## HITS:1 COG:STM2784 KEGG:ns NR:ns ## COG: STM2784 COG0642 # Protein_GI_number: 16766095 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 468 1 468 471 726 87.0 0 MRWVKPQSLYSQLLMFLGLPLLLLWGLSAFNSYVSALQAATQAYDRTLLSSARTVSERLV VRDKRLEVNVPWVVLDSFELNMNDRLYYKVVDPAGKVISGYDDLPAMPPSTSRTRLYPAL AWFYHTEYRGEAIRVARLLQPVNEGGIVGMAEIYVAETLQSRRYLARQLLFSSWVSQGLL VMLTLVLVGWLLRRVLRPMRQLSSLMVRREPGLLTPLPELLPWSETRLLIVAFNRYLDRL RGLISRQERFSADASHQLKTPLAVLKTQAAVALASPQPRQWYESLQAMSVTLDNTIQLTE RLLQLSAVKRKEQEEKHFTPVNLYEVVQSSCFTRLAQARSKAIDLGYEGEQDAVWIEGDE VLLGELCGNLLDNALKYTPPHGVVTARLLREGEAVVLLIEDSGPGIDDQMVHQAMLPFHR LDNVGNVPGAGIGLALVNDIARLHRTHPQLARSETLGGLSVRVRFLSVAV >gi|283548476|gb|GG730301.1| GENE 352 391472 - 392887 892 471 aa, chain + ## HITS:1 COG:VC0934 KEGG:ns NR:ns ## COG: VC0934 COG2148 # Protein_GI_number: 15640950 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Vibrio cholerae # 3 471 5 465 465 369 46.0 1e-102 MLKKSLKISSQGYPVFLKLVDFIVINVTLIFSAHLLGLLPFNTIAILSILFSVFFLLFAE YIKIYQQKIKTIGLRNQKRLLFCTLLAIFFNELVSMTVAEPESLGYLDRLPSPFYSAIIY WYFIPLPFLYYIRFFIFKYSTKKSMRVAIIGMTDNGLAAESALLYEYANIKLDLAFYDER ALSRCGDIVDKVKSPFRGPVINLVEEARLGNIDEIYIALPMVALHRIRHFLTMMSDTTVD TYIVPDFYTYSNNMSKLRSIHNLQTIGIFSSPFEGAGSFIKRAEDLVLGSIIMLMISSLM LAIAIGIKLTSRGPVFFKQDRYGLSGQKIKVWKFRSMRVMENADTVIQATKNDPRVTKFG SFLRRTSLDELPQFINVLQGSMSIVGPRPHAVTHNEQYRKQVENYMIRHKVKPGITGLAQ INGFRGEIDALYKMEKRVQYDIEYIQNWSLWLDIKIIIKTIFKGFVGKNAY >gi|283548476|gb|GG730301.1| GENE 353 392877 - 394163 704 428 aa, chain + ## HITS:1 COG:no KEGG:EcolC_3173 NR:ns ## KEGG: EcolC_3173 # Name: not_defined # Def: putative capsular polysaccharide biosynthesis protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 428 1 428 428 645 74.0 0 MHTKLIVITGIVISQPAWADLTPKSHIGFAGIDFQGKVAVDYGYNDNVTYQPHNSDAVGS SFQSAAPVLSMIGERGQDKYLLMYSGDYRNYSSDSADNYTDHFFRFNGAWRYGLKHGLTL NLEDSLGHESRGRGITEGFLPDQFKQYGITSPLTTNFINSELRYSYGAPEGRGKAELALL YKKLTFGNTSDVQDVSEDFYNYIQEQEWHENSLIAEIFDQYTSRTRFRYSFITNQRRYDN NSEKDTNEYYLLYGLKSQLTGKTNVDMNISWLYKTFENNANSHDFNGLNWDIKAEWKPLQ QSVFTAHSAQSIKDPSEVGGYILVTQYGISYQHFWLGDRFSTVLDYSYTAEDYKKQNKDR HDKDGVFSVTMSYDYTPSVNFEIKYQLDTLNSNKDTDSFYIGPNDNQEVIRTLGYDNSMI MLKAKVQI >gi|283548476|gb|GG730301.1| GENE 354 394165 - 394722 245 185 aa, chain + ## HITS:1 COG:VC0936 KEGG:ns NR:ns ## COG: VC0936 COG1596 # Protein_GI_number: 15640952 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Vibrio cholerae # 37 185 26 175 175 113 36.0 2e-25 MKIIELCAFLLFSILVVGCTTSSPRLMDDPATVQQDYRLGAGDTVNIAVHGQPDMTMRFI LDKSGEINFPYVGALKLKDKTVEQVTNELTQRLTGDYFTTPMVTVSIAEFRKYYVSGEVK SPNGFAWEPGLTVEKSIAQAGGFTDRADRKDINIRLSGSNQLLENVDLTHSVHPGDVVII GMGFF >gi|283548476|gb|GG730301.1| GENE 355 394725 - 396854 1728 709 aa, chain + ## HITS:1 COG:VC0937_1 KEGG:ns NR:ns ## COG: VC0937_1 COG3206 # Protein_GI_number: 15640953 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Vibrio cholerae # 12 401 8 423 435 160 26.0 7e-39 MKLSIVENGKKRESTVEFSRFAKELKKNAWKIALAGIVAGVVAYPLISMMSSKYVSTATV LIKAQADNVSPFPQVDGFDSTRSGYYETQYALMHSRIVLEQAVRDMKLDENPEFTGEKAD ARGADSNESRQLRMEQALKTLSKNLNVIGIRTTNLASITYESPSPLLAADVANGVAQAFI NYTVEQKRLKVEKARELNFEKMEEIQKSIAKQKEEMDSYLKNAGLLTFRGIDGFETEQLS IVTNRLADATQRRVAAESVYNEVNGGGKSVESVISLPSVSNHAQIQDLRIALIQAQRTLS ELRKVYGPKNPAILKAEADVQSIQSQTGRVLGELKVGLRQQYLAALADEKNYQQQVAQQK EIFQKMASKRDAWNSQKLSLDKMEDLYKSLYQRTQELSLSGVNADAVLYDPAVPPLKPAK PNKSLLLVMVVLLVVVFSIMYFIVKAAMDSSIGTLSRMKKRLNVVPLGEIRRFSGTSGRA QVRDMILKNPLNADIVHGIRTRIMLDNRPLQTLAVASAEHGEGRSLLASLLANSFSFDQK TLLIDADFFNTGGLSSELASATSAGVAELLRGEAELEQVRITLSDKLDFIPHGKTTLSSL LMLSSGHLEPLMRELKSHYQRIIIDVAAVNQSQDVQLIKRAVDGVIFIVKAGAGSAGHIA NALDKLEENNGVVIGAVLNAVEEKDLETQEGLRSLNFSTDQLMTTPGRV >gi|283548476|gb|GG730301.1| GENE 356 396851 - 398062 886 403 aa, chain + ## HITS:1 COG:no KEGG:EcolC_3176 NR:ns ## KEGG: EcolC_3176 # Name: not_defined # Def: putative capsular polysaccharide bisynthesis protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 402 1 402 403 581 82.0 1e-164 MSLLKSASTIAGSSVISQLIGALSIWLISHKYNMAEVGLYALNYSIAVVGAQVCTFASQL LIPKQQDDELVQNVVFCLIQSTLIALPYAVLTAWLFHQNILFLYLLTLATAWVLISENLS LRTANFRFLIFQRISVSVVVLLSILVTHHVQLFYWSWACATMVLTISCILHSFDIRAVTA RHLRPASNWHFFKQNIHHITKVGSAEVLAMASSNLPIMLINFWFSALTAGYFSVVSRFCL APVVIIGNAVRNTIFSKWSIDFRNNTFNYQEYTRVRMLLLVLGVICTLGVFIFYPIVMRL GFSEDWINSIETSRYMLPYLFPALAISPLTVIELIFGSHRYFLRIQLEQLAIVLFAFVVI PYFYKDYATSVIVFSSLTFIRYAFIYLKMNKRANLLKDRPVIL >gi|283548476|gb|GG730301.1| GENE 357 398059 - 399429 1265 456 aa, chain + ## HITS:1 COG:no KEGG:EcolC_3177 NR:ns ## KEGG: EcolC_3177 # Name: not_defined # Def: putative capsular polysaccharide bisynthesis protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 455 1 455 461 662 82.0 0 MTLNTGYYLQGYTFVTLILCGLVQYFTGMQSVLWLPFFLTLLMVGLLVMQTRDGSLQLDA QETIVLALYFSFLILAGTSTLIQGGITVAIVAFKNEIALSLVMICLLLGFCRESQIYRVT RYLYWVFYAQIPVMIYQVLLVVPQRVAVRGEDEKWDSVVGTFGGDPMGGGNTAAMGLFCL LIMLLKVSEYKHGLTTFKSMALHIILGIGLCIIGEVKFVILLSPLFLAWVWISPSYVKDV SKINLKTLLLIVAGMLLLISLSIVILAYYYSSAFGGDPSKSSLSIFIDSLSYIFDPNYIM SNGELGRFTTFLFWLKNNDLWGLSGTLFGYGLNATNSGSTVSPGFLNIIYNLILDSTSLS VLLWEVGVIGTLLFISLFIYILKVCQPRPLLTLEQLDPQDLQLLSFAPAFNAFAIGCLIS LPYSQILMITPMLQFLFYLSLGSSLVIRRTVLRCVG >gi|283548476|gb|GG730301.1| GENE 358 399434 - 400423 911 329 aa, chain + ## HITS:1 COG:SMb21500 KEGG:ns NR:ns ## COG: SMb21500 COG0463 # Protein_GI_number: 16265078 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Sinorhizobium meliloti # 7 252 3 248 347 200 42.0 3e-51 MDNKPFISVSIKTLNESECIEKTIDSIRKQLVDYPHKIIVADSLSTDNTQQLAIDKGATV VSLTDPGDRCCGVGHQLGYLYSEGEYLLLMDGDMELEEGFVDQAVAFLQAQPEYAGVAGT VEMDDAVNYEFKSRKQRINKIYPVGDSDHLGGGGLYRRSAIEKIGYLTNRNLHAYEEAEL GLRLLDAGYKLRRLNIPYFIHTSHTMPTFQMLKHRWKSGYYQAPGEFLRCAWGKPYFIKA LKMVKNEAIFALYLIALFVAAVTFNLELFDIAFLPLLIFVVLKTVQNRSLLNGLQSVMNL AVLSAGLVKGLTHPQRDPLTPPDSKIIHE >gi|283548476|gb|GG730301.1| GENE 359 400438 - 401649 1001 403 aa, chain + ## HITS:1 COG:SMb21503 KEGG:ns NR:ns ## COG: SMb21503 COG0438 # Protein_GI_number: 16265081 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 2 370 5 378 447 253 37.0 5e-67 MKVLLVNKFFFIKGGAETVYFQERDMLKLAGVQVIDFSMQHEKNFPSDYADYFVSNVDYH KESNLLGGLKTAVSFIHNSQACKKMLALLQKERPDIVHFHNIYHQLTPALIKVARNFGCK TVLTAHDYKIVCPTYSMLRDGKVCDSCITGTVFNAFRYRCQEGSASKSLLLSLEATWQYI AQNYQALDAIVSPSVFLRGVLLRTLPKSRIDVIVNGVDDSRPLDDADDEGYMLFFGRLSR EKGVATLLAAHKKMQNKAPLKIVGHGPLHDELVAQYPDVEFLGYVQQGEALDKLIKHARA VILPSECYENCSMAILEAMSLGKPVIGSRIGGIPEQIRDGIEGILFEPGNVQALANAMDT LAGSAEKARVMGLHGRARLSEKYALSKHMDTLLALYKELLSRP >gi|283548476|gb|GG730301.1| GENE 360 401651 - 402763 780 370 aa, chain + ## HITS:1 COG:SMb21502 KEGG:ns NR:ns ## COG: SMb21502 COG0438 # Protein_GI_number: 16265080 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 3 367 22 389 389 249 39.0 5e-66 MSKKITVFGTRGIPDVLGGVETHCQNLYPAIRQQIDVDICVIARSPYVNYKRSSYKKVET YALWAPKKRSLEAIVHSVLAALRTGIDHSDIVHVHAIGPGLVIPLLRVLGKKVVFTHHGP DYDRQKWGFVAKKILLLGERWAVRYANEVIVISEVINQLIQKKHGRYDAHLIHNGVNEPR LLSELTIENTLSRFRLQPKNYLVVVGRFVEEKGMHDAIAAYQQSGLTMPLVLIGDADHPT EYSIRLKKQAADTSGVVMTGFLRGDELQAVFSQAKLFVMPSYHEGLPIALLEAMSFSLPA VVSDIPANLEVQLPAAAYFKVGDVASLAEKLTQSVAANRVDYRVYLQNYNWHEIAKKTVN VYHSIDKDIG >gi|283548476|gb|GG730301.1| GENE 361 402766 - 403173 137 135 aa, chain + ## HITS:1 COG:no KEGG:EcolC_3181 NR:ns ## KEGG: EcolC_3181 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 135 1 135 135 167 69.0 2e-40 MTSPQNRPPVIERFYAHLDEQIAKGLTPEQKEGVENAILASTLASRHQIDIRRSFPFFSK RFYLVFLFGRDLRRQHRQESTLSRILLTFLLLIAVLFVTCCVLLTLYMIKSALGIDVFQN FHVGIWDWWLSLKNR >gi|283548476|gb|GG730301.1| GENE 362 403205 - 404596 957 463 aa, chain + ## HITS:1 COG:no KEGG:EcolC_3182 NR:ns ## KEGG: EcolC_3182 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 461 1 461 467 717 72.0 0 MRCKWVSALLCMFFPLTVMAALTTVTPKALTGPLTNPGIGVASFHQGYGETLGLADYPNT GFEYERFYWRDLEPVEGQYNFALVDDAFKYAAAHRPAMNVGLRFMALADPADGTKIPDWL IKKGVKGTWTPDNKTFVPDLGDPLFIEYSQRLLTAFGKRYDGNENLAFVDIGMVGSWGEW HNSNFPNLQPLLERYTTVQLDRYVAMHFSAFPITPKIMLISGGQSLANAVARGAGWRADC WGDLRVFSNAWNHMQDDYPQRLLAAQQSYSGFNDAWKRAPVSLEICSYMQDWQNSFHYTR AEVQGIFDWAIKQHASTINLKSRAIPSDYRPIVDDALTKLGYRFRLASLSHEAVWRGGQT LTLNSTWYNDGVAPIYLPYTLAFRVVDSANKVVAQGNAADDIRRWLPGIYQVSYALPMPD KLAKGQYAIEVAMLDKSGTPGINFANEGKQSSGWYRISTITAD >gi|283548476|gb|GG730301.1| GENE 363 404643 - 405659 762 338 aa, chain - ## HITS:1 COG:PM0286 KEGG:ns NR:ns ## COG: PM0286 COG1087 # Protein_GI_number: 15602151 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Pasteurella multocida # 1 336 1 336 338 456 64.0 1e-128 MAILVTGGAGYIGSHTVLTLLERGDDVVVIDNLSNSCRVSLDRVAELAGREPIVYIADIL DRQTLKNIFTRHNITDVIHFAGLKSVSESIKEPLAYYENNVTGTLVLLDEMLAAGVNRFI FSSSATVYGNPESVPLSEQSRTGGTTNPYGTSKLMVEQILADFSRAQPDFRITCLRYFNP AGAHPSGRIGEDPNGIPNNLVPYISQVAIGKLETVSVYGNDYPTTDGTGVRDYIHVMDLA TGHLAALDCQNKGAAYKVINLGTGVGYSVLDLIEAFEKAAQTKINYRFVARRPGDIAECW SDPSLARKELGWQASFNLDDMMRDTWNWQKNNPNGYNL >gi|283548476|gb|GG730301.1| GENE 364 405727 - 406635 459 302 aa, chain - ## HITS:1 COG:no KEGG:EcolC_3184 NR:ns ## KEGG: EcolC_3184 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 300 9 308 308 419 66.0 1e-116 MLFYHESWDIMIIKDHGSHLFPDNTLEILSTSDAQQLKKKYTFQADPFIIEKDDKLYVFY EAFSFLNSKGTLRCRILDRELAEIDDVKLEGFDDLKCHLSFPFLIDINDQLFMIPESSER KEVILFQSVEFPTRWQQIKVLLSDTEVTDNIFLSINNVCYLLSTTMDNEIVIHAADHIYG QWQRITPALNVSNHHHRGAGAPYLVDDKMYFLTQECTPETYGKSIYIKKLVTLNDTVFDE SLIEKITSSINHSDGVHTLNFSNNYIVYDTKINKFSLLAILKKISYKCMIKYRNVYLSRR YN >gi|283548476|gb|GG730301.1| GENE 365 406884 - 407519 656 211 aa, chain - ## HITS:1 COG:ZcynT KEGG:ns NR:ns ## COG: ZcynT COG0288 # Protein_GI_number: 15800068 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Escherichia coli O157:H7 EDL933 # 1 208 1 208 219 283 64.0 2e-76 MQHIIEGFLNFQKEIFPQRKELFRSLASSQNPKALFISCSDSRLVPELVTQQEPGQLFVI RNAGNIVPSFGPEPGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIADSQPLDPMPAVA HWLHYADAAKAVVEKKTWDNPIDKVNAMVEENVIAQLNNIKTHPSVAVGLRNNALRLHGW VYDIESGEIRTLDKNSKTYVSLADNPHVHFE >gi|283548476|gb|GG730301.1| GENE 366 407848 - 408354 314 168 aa, chain + ## HITS:1 COG:no KEGG:Entcl_2307 NR:ns ## KEGG: Entcl_2307 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 168 1 165 165 186 70.0 3e-46 MSRLRTLATALVAVAAMTMCATPVLANPGNGNGNGNGNSGNHGNNGNKGNSGNSQKGNSG QKNNSPTEQRKNYGKPDHVDSDISYNVARQYAVRYGLTGYKSLPPGIAKNLARGKPLPPG IAKKSVPASMLNQLPYYPGYEWQVVGDNLVLIALSTAIVTAVINGVFD >gi|283548476|gb|GG730301.1| GENE 367 408814 - 409428 434 204 aa, chain + ## HITS:1 COG:ECs3248 KEGG:ns NR:ns ## COG: ECs3248 COG2197 # Protein_GI_number: 15832502 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 204 1 204 204 278 70.0 7e-75 MNAIIVDDHPLARIAIRNLLDTNGISVTTELDSGEQVVQAVEKNKPELLIIDVDIPGISG IEVLEQLRKRHYAGIIIIISAKNEYFYGKRSAEYGANGFVSKKEGMNNILAAIEAAKNGY SYFPFSLEHFTGSSVSEQDKLDTLSTQEMRVLRYILNGMDYSTIASKMNISNKTVSTYKS RLMEKLDCSSLMEIYDYAQRNKIG >gi|283548476|gb|GG730301.1| GENE 368 409433 - 412675 1866 1080 aa, chain + ## HITS:1 COG:ZevgS_1 KEGG:ns NR:ns ## COG: ZevgS_1 COG0834 # Protein_GI_number: 15802913 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli O157:H7 EDL933 # 29 527 31 529 530 405 37.0 1e-112 MLERLFIFLMVIFTIGVSTGVSSARQVELKSNYNTTVQSISFNREETNWLAHKKTLVVGT WLPEVSPIVYQNSGEYYRGVNADYLALMQKSLNIKIVIKQYDNEQQVFAALASNDVDTLI TQLSRRQDVGGHLLRTSALLTTWPTLVTSLKNTMLPLMTNHKVSVACVRDCPFLNVIQDA FPDAKVSFYDDEYQAMASVVNEDNQYYIGNNITSSHCISRYFSQSLVITHYFDKQEQYNY FVVNEDRPLLRNILDGFITSISNEIHMQVMQNWLNRGNLAYLNAPIPFSHQEKEWLKNKH TIRILINPDYPPYTLVDSSGELRGILGDLLNIIHLQTGLDFEPVLATSKSEQTTLINSEQ WDMYPTITPTHQDPGEATFSDPLMNVAFVIITSRQETADSLLEKPIRIALPAGHVLEKDL KQRYPQATWVNADTGSTAMAMVKEGSVDAAIATELSARFITDHYYQNNMHFFRLPDMPGA SVSFAISSHEPMLKSVIDKALQAIPPREILQMTEKWSKISNTQVDIWSRYSKQFYQLVVF ALVLIAISLIWGISLSREVRKRKQSQRLLEEQLHLKEVLSQELETEKNKAIEATKAKSRF LASMSHELRTPVSSIVGFLELLSSSELSPAQRKEAIALTGATAQSLLGLIGKILDVDKIE SGKYQVVPQWTDLAQLIELQCHSFDALARQKGITLACISQLPINERVFVDQQALRQILTN LVGNALKFTTQGSIHVTARLTPETDNHGTLTITISDTGCGISEEEQAGLFHRYAQGRCGR QQTGSGLGLFICKELVTLMGGTLELKSVLSKGTTFTITLPVETARQSIVPDGDTAGALLP LPCLSILIADDNPTNRLLLKRQLNTIGYSVDEACDGEEAEAKLAKKSYDLLITDVNMPKK DGFDLAASLRRQQPHLQIWGLTASALPQSRDRCLQNGMNLCLFKPVSIQTLTHELSKIDT GYASPCAIRHLKFNVLTENTGGDRALMNEILETFREATCSDLQAAEKAVEQDEPQLFLRA LHRLHGSAQILGITALQTLCEPFESMRHDDLPLAVRQQALQKIVAVMREIEMEIDSLISH >gi|283548476|gb|GG730301.1| GENE 369 412750 - 413379 621 209 aa, chain - ## HITS:1 COG:no KEGG:Kvar_0610 NR:ns ## KEGG: Kvar_0610 # Name: not_defined # Def: hypothetical protein # Organism: K.variicola # Pathway: not_defined # 1 208 1 209 210 243 76.0 5e-63 MKKIILAGLLAAIMGSAPVMASATTTTPAQTATANVQKEAADIMQVAVQGANAMRDIQLA RLALFHGQPDSAKKLTDDAASLLAGDSSDWAKFVKAAPKAKMIDDRYVIINATVALSEDY IATPEKESAIKTANGKMAKGDWKGAVDTLQLAGISVLQTQYLMPLNQTRKAVASAQKLLS SGKYYEANLVLKGAEEGIVIDSEMLGAGQ >gi|283548476|gb|GG730301.1| GENE 370 413739 - 414257 326 172 aa, chain + ## HITS:1 COG:YPO0590 KEGG:ns NR:ns ## COG: YPO0590 COG3247 # Protein_GI_number: 16120919 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Yersinia pestis # 1 152 27 178 189 89 35.0 2e-18 MAVLLLICGICCLIYPIAAGVYLSYATGFMFLVCGFYSIYSLFSAGKKQLKAKFTYAFFA ISWLLLGYCFLVNPVIGMNSLAMVFCCLFILGGIFRVASGVKMFRAPGYIWNIFIGILDL LIAGVWLNMDPDRSYVFTSIFIGVEMIFSSLAFISLRRNAKLIATDKLANNN >gi|283548476|gb|GG730301.1| GENE 371 414289 - 414603 255 104 aa, chain + ## HITS:1 COG:no KEGG:Kvar_0608 NR:ns ## KEGG: Kvar_0608 # Name: not_defined # Def: acid-resistance protein # Organism: K.variicola # Pathway: not_defined # 17 94 21 96 101 86 55.0 3e-16 MIVSAVMLMTFVMAPMSRAFATQATEAAPQDMTCKEFVDMSHQYKTAIAFVIVNKNSDFK GDDYVPLQEVETVAVPKMINLCHQRPDTKLGELAVNLQGAGLHD >gi|283548476|gb|GG730301.1| GENE 372 414826 - 417942 2620 1038 aa, chain - ## HITS:1 COG:yhiV KEGG:ns NR:ns ## COG: yhiV COG0841 # Protein_GI_number: 16131386 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Escherichia coli K12 # 1 1035 1 1035 1037 1686 86.0 0 MANFFIERPVFAWVLAIIMMFTGGIAILNLPVAQYPQIAPPTITISAAYPGADAKTVEDS VTQVIEQNMNGLDGLMYMSSTSDAAGNASIILTFKTGTSPDIAQVQVQNKLQLAMPSLPQ EVQQQGISVDKSSSNILMVAGFISDNNSLSQYDIADYVASNIKDPLSRTPGVGSVQLFGS QYAMRIWLDPQKLDKYNLTPQDVIAQLKVQNNQISGGQLGGMPQSADQQLNASIIVQTRL QTTDEFGKIFLKVQQDGSQVLLRDVARIELGAENYATVARYNGKPAAGIAIKLAAGANAL QTSQAVKQELNRLSAWFPASMKTVYPYDTTPFIEISIQGVFHTLIEAIILVFLVMYLFLQ SFRATLIPTIAVPVVILGTFAILDVAGFSINTLTMFGMVLAIGLLVDDAIVVVENVERII AEERLSPKAATHKAMGQLQRALVGIAVVLSAVFMPMAFMSGATGEIFRQFSITLISSMLL SVFVAMSLTPALCAMLLKPHEGEKANAHFLFTRFNHFMEKCTHHYTNSTRRLLHCTGRYM VVYLVIGAGMMVLFLRTPTSFLPEEDQGVFMTTAQLPSGSTMVNTSKVLGEITDYYLTKE QKNVASVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIRRAMMALSTINNAV VYPFNLPAVAELGTASGFDMELLDNGNLGHEKMMQARNQLLALASQSSGEVDGVRPNGLE DTPMFRVHVNAAKAEAMGVALSDINQTISTAFGSRYVNDFLNQGRVKKVYVQADTPFRML PDNINHWYVRNASGAMTPLSAYSSTEWTYGSPRLERYNGQPAMEILGQPVAGKSSGDAMK FMASLINKLPAGVGYAWTGLSYQEAQSTNQAPMLYGISLIVVFLALAALYESWSIPFSVM LVVPIGVVGALLATDLRGLSNDVYFQVGLLTTMGLSAKNAILIVEFAVEIMQKEGKKPLE AAVEAAQMRLRPILMTSLAFILGVIPLAISHGAGSGAQNAVGTGVIGGMLAATVLAIYFV PLFFVLVENMLARFKTRR >gi|283548476|gb|GG730301.1| GENE 373 417971 - 419128 899 385 aa, chain - ## HITS:1 COG:yhiU KEGG:ns NR:ns ## COG: yhiU COG0845 # Protein_GI_number: 16131385 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Escherichia coli K12 # 1 385 1 385 385 532 72.0 1e-151 MNRKCLLLIPLFFSSVIITACDNKPAINLTSREPEVGVITLAPSSVNIKSELPGRAVSFE IAEIRPQVGGIIIKRNFIEGDKVNQGESLYQIDPAPLQARLDAAKGALAKAQATANNIRL TLNRQSALLKSNYVSRQDYDTTRSQLNEAQANVAVAKADLEQAAINLRYANVTSPIDGIS GKSSVTVGALVTANQGNALVTVQRLDPIYVDLTQSVQDFLRLKEEKANGKIAQQKGRIPV ELMLENGKPYRHTGTLEFSDPAVDETTGSVTLRAVFPNPDGEILPGMYVTALLDEGSQQN VLMVPQQGVTHNEQGKATALILDQENVVQLREINAVKAVGNQWLVTAGLRPGERVIVSGL QRIRPGMKARVLPSKLNTPDAVTEQ >gi|283548476|gb|GG730301.1| GENE 374 419398 - 419964 504 188 aa, chain - ## HITS:1 COG:ECs4377 KEGG:ns NR:ns ## COG: ECs4377 COG3065 # Protein_GI_number: 15833631 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Starvation-inducible outer membrane lipoprotein # Organism: Escherichia coli O157:H7 # 1 188 12 199 199 316 78.0 2e-86 MKKTKGLLVIALAFTLAACASIPENIKGNNQPDIQKNFIAVHNQPGLYTGQQARFGGKVI NVINTKTDTLLEIAVLPLNNYAKPQIDASYQGRIIAQQKGFLDPVNYRNHFVTILGTIQG DEQGFINKVPYNFVKVDLQGIQVWHLTESVNTTYNMWDYGYGPFWPGPMWGAPYYANTVT EVTPELVK >gi|283548476|gb|GG730301.1| GENE 375 420207 - 421061 1038 284 aa, chain - ## HITS:1 COG:YPO2576 KEGG:ns NR:ns ## COG: YPO2576 COG1737 # Protein_GI_number: 16122791 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 1 271 1 271 284 436 91.0 1e-122 MTTATSLNELQQQIRDRYDSLSKRLQQVSRYVLDNTNSVAFDTVAVIAERAGVPPSTLIR FANAFDFTGFNEMKQLFRMNLVEETASYSDRARLFREMESEAVPETPLDILQEFARSNTQ ALQQLAARAEPEMLERAVQLLADADTIYIAGLRRSFSVAAYLTYALSHLECRPILLDGMG GMLREQINRIKARDIVVSISFSPYAEETVMVSETAASAGARQIVITDSQISPLATFSDLC FVVKEAQVDAFRSQSATLCLVQSLVVALAYRLGDGSQENGHSVA >gi|283548476|gb|GG730301.1| GENE 376 421355 - 422860 1445 501 aa, chain + ## HITS:1 COG:YPO2577 KEGG:ns NR:ns ## COG: YPO2577 COG1012 # Protein_GI_number: 16122792 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Yersinia pestis # 1 501 1 508 508 876 84.0 0 METVANFIHGECVTGSGQRVQAIFNPATGEQIRQVVMSTTQETEQAIAAAHDAFPGWARH SPLKRARVMFRFKALLEENMERLARIISEEHGKVFSDAVGELTRGLEVVEFACGIPHLQK GEHSANVGTGVDSHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPS LALALAKLLQQAGLPDGVFNVVQGDKESVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAH GKRCQALGGAKNHCILMPDADMDMATNAIMGAAYGAAGERCMALSVVLAVGDKTADALCS RLEKQIAALRVGPGLDQTPENEMGPLISSTHRNKVLGYIDSGEAQGAKLRVDGRRFSVKG HEQGYFVGPTLFDNVTPEMTIYKEEIFGPVLSVVRVADYASAVDLINRHEYGNGTAIFTR DGGCARRFCEEVQAGMVGVNVPIPVPMAFHSFGGWKRSIFGALNVHGNDGVRFYTRMKTV TARWPEMLQETGAAFSMPTLG >gi|283548476|gb|GG730301.1| GENE 377 422872 - 424797 1822 641 aa, chain + ## HITS:1 COG:YPO2578 KEGG:ns NR:ns ## COG: YPO2578 COG3962 # Protein_GI_number: 16122793 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase # Organism: Yersinia pestis # 1 641 8 648 648 1066 82.0 0 MQTERMTMAQALVKFLNQQYIGVDGQETPFVEGVATIFGHGNVLGIGQALEQDPGHLQVM QGCNEQGIAHMATGFAKQHRRQRIFAVTSSVGPGAANMVTAAATATANRIPLLLLPGDVY ASRQPDPVLQQIEQFHDLGISTNDCFRPVSRYWDRINRPEQLMSAMLNAMRTLTDPADTG AVTICLPQDVQGEAWDYPLSFFARRVHHIERRPPDPLRLAQARVLIARKRRPLVVCGGGV RYSGAHEAFRSFVETLQLPFAETQAGKGALVSDHPLNLGGVGVTGGMAANQLAAQADLVI GIGTRLTDFTTGSKALFSHPDVEFLLLNVAEFDALKLDATALIADAQTGLTALTEALQDY RSGWGEEIAQAQSAWRDECQRLWTRDWHPDEAPEVAGHLDAQLAEYGDTLNTRLTQTRVL GLINQHIEDNAIVVGAAGSLPGDLQRIWQVKTPDSYHLEYGYSCMGYEIAAAIGARLAQP QQPVYAMVGDGSYMMLHSELQTAVQEGIKVTILLFDNASFGCINNLQMGHGMGSFGTENR HRNPQSGRLDGPLVKVDFAQNAQSYGCRAWRVNDEQSLLAALEASRAHPGPALLDIKVLP KTMTHDYASWWRTGDAQVADSPAVRKAAEQTFEQVKKARQY >gi|283548476|gb|GG730301.1| GENE 378 425142 - 426128 987 328 aa, chain + ## HITS:1 COG:AGl1682 KEGG:ns NR:ns ## COG: AGl1682 COG0673 # Protein_GI_number: 15890957 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 328 5 329 330 313 52.0 4e-85 MFNIALLGAGRIGQVHAANIASHSATTLWSVVDPNQEFATRLATQYQARLQSLDEAMTDP NVHAVLIASATDTHADLIELAARHGKAIFCEKPVHLDLARVRDCLKVVKEYDVPLFIGFN RRFDPQFRRVKTDALAGRIGKPESLLIVSRDPSPPPAEYVRVSGGMFRDMTIHDFDMARF IMGEEPVSVYAQGSNLVDPAIGAAGDIDTAFIVLKYASGAMATIVNSRRSSYGYDQRLEL HGSEGLLCAGNILENQVQHYAKTGCTSALPEHFFLQRYKSAYAAEWEHFVAVLRGEAVPD CSGDDGERALYLADKALESLHSQREVLL >gi|283548476|gb|GG730301.1| GENE 379 426167 - 427096 1135 309 aa, chain + ## HITS:1 COG:YPO2581 KEGG:ns NR:ns ## COG: YPO2581 COG1879 # Protein_GI_number: 16122794 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Yersinia pestis # 1 308 1 308 309 501 84.0 1e-141 MKKLILAVLIAMTSGAAIAENEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVLDGQ GSSPKQVADLENAITRGAQGFIVSPNDVNAVSSAVDEIQDAKLPVVTLDRSVDSQKKVPH FGANNYKGGQAIGDFVKAKFPNGADIILLTGQPGSSSNIERTKGIRDSLKAGGEKYKIVA DQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQGQGLKPGEVLVTGFD AVPEALARVRDGWMAVTADQRPGFAVKTAMSQLVSNVREKTAITGADYPPTLITKENLQQ AERIGEAGN >gi|283548476|gb|GG730301.1| GENE 380 427152 - 428699 177 515 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 282 487 17 217 245 72 26 2e-11 MSQPLLKVTDLAKSFSGVWALSSAQLTVGAGEIHALLGENGAGKSTLLKALAGAQPQTRG DIWFNGETLPVDDSPVERQNKGIITIYQEFNLLPNMTVAENMFLGREPRKRNLIVDEKAV NQEAQVILDYLQLNVAPTTPVARLSVAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVE SLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRFTGTGAVAETNVEQLIRLMV GRDVAFNRRPASETHHEDKPVRLAVKGLSREKPPLDPHGIALHDISFHVHAGEVLGIAGL VGAGRTEVARCLFGADGFTSGSFELDGVPYQPRDPLYALDQGLALVPEDRKKEGAVLGLS IRDNLSLSSLSSLLHWRWFVNTRKEDALIESYRQALQIKMVNSEQEVRKLSGGNQQKVIL ARCMALNPRVLIVDEPTRGIDVGTKSEVHQVLFDMAKKGVAVIVISSDLPEVMAVSDRII TLSEGRVTGEIHGDDANEERLMTMMAINHNALNAA >gi|283548476|gb|GG730301.1| GENE 381 428711 - 429739 1401 342 aa, chain + ## HITS:1 COG:YPO2583 KEGG:ns NR:ns ## COG: YPO2583 COG1172 # Protein_GI_number: 16122796 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Yersinia pestis # 1 342 1 342 342 506 92.0 1e-143 MTQIISKTQVPAKRGGRLDPIAFFERFGVLIFMILLLIFFQSQNSNFLSERNIFNILTEV SIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIKGDNFTTVDPNAWNGMSWLIGL GICLAMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWG RGELLGISIPIWIFALVAVGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVRRVLVSVYV LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIM GILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL >gi|283548476|gb|GG730301.1| GENE 382 429748 - 430881 1543 377 aa, chain + ## HITS:1 COG:YPO2584 KEGG:ns NR:ns ## COG: YPO2584 COG0673 # Protein_GI_number: 16122797 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Yersinia pestis # 1 377 1 377 377 658 84.0 0 MKQVRIGLIGTGYIGKAHAIAYAQAPTVFNLRGKLVREMVAEVTPQLAAERAQAFGFNRS TGDWRALVADPAIDVVDICSPNHLHKEMALEAIRHGKHVYSEKPLALNAHDAREMVDAAQ RAGVKTLVGFNYMKNPTAQLAKEIIARGEIGEVIHFYGTHNEDYMADPLSPIHWHCFKET AGLGALGDLAAHIVNMAQYLVGEIEQVCGDLKIVVPERPVKAGSTEMIAVENEDQAHAMV RFAGGAQGVIETSRVACGRKMGLSYVITGTKGTISFTQERMAELKLYLHDDPVNRQGFRT LLVGPAHLDYAAFCMGAGHGIGFNDQKTVEVRDLVDGIAADAPMWPDFEEGWKVSRVLDA IALSHREGRWLNVNDIV >gi|283548476|gb|GG730301.1| GENE 383 430921 - 432798 1921 625 aa, chain + ## HITS:1 COG:YPO2585_1 KEGG:ns NR:ns ## COG: YPO2585_1 COG0524 # Protein_GI_number: 16122798 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Yersinia pestis # 1 326 32 357 357 578 86.0 1e-164 MGRVAVDLYSQQIGARLEDVSSFAKYLGGSSGNVAYGTARQGLRSSMLARVGDEHMGRFL REELNQVGCDTSHLITDKDRLTALVLLGIKDRDTFPLIFYRDNCADMAITASDVDESYIA SARCLAITGTHLSHPQTREAVLTALKYARRHGVRTALDIDYRPVLWGLTSLGDGETRFIA ADQVTRQLQDVLHLFDVIVGTEEEFHIAGGSTDTLQALGQVRAVSQATLVCKRGALGCSV YTDAIPPRLDDGLTVTGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWEQACRYANACGALV VSRHGCAPAMPSKIELDDYLARAAMVPRPDLDPRLNHLHRVTTRRRTWPELCVMAFDHRS QLEEMALQCGASLKRIPALKQLILQASREAANSAGLEGKAGLLCDGTFGQDALNAITGEG WWIGRPIELPGSRPLEMEHGNIGSQLISWPQEHVVKCLVFFHPEDAHALRLEQEQKIAEV YRACCQSGHELLLEVILPASMPRSDELYLRAISRFYNLGIYPDWWKLPPLSADGWTALSE IIARRDPHCRGVVILGLDAPAEQLRADFKAAAGQAVVKGFAVGRTLFGDASRAWLKHDID DAQLVARIKDNYLQLIAWWRERGHA >gi|283548476|gb|GG730301.1| GENE 384 432813 - 433703 1187 296 aa, chain + ## HITS:1 COG:YPO2586 KEGG:ns NR:ns ## COG: YPO2586 COG1082 # Protein_GI_number: 16122799 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate isomerases/epimerases # Organism: Yersinia pestis # 3 296 13 306 306 534 87.0 1e-152 MTVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFVGFELGNKFPREARLLGPILQR HDLQLVSGWYSGRLLERSVEEEIAAVQPHLTLLRELGAKVMVFAEVSGCIHGEQQTPVHL RPRFPQARWQEYGEKLTEFARYTQQQGVQIAYHHHMGTVIESAEDVDNLMTHTGEEVGLL LDTGHLTFAGADPLAVAQRWASRINHVHCKDVRADVLADVKNRKTSFLDAVLSGVFTVPG DGCVDYPPIMALLKANQYQGWLVVEAEQDPAIAHPLTYARLGYNNLSRLARDAGLI >gi|283548476|gb|GG730301.1| GENE 385 433713 - 434531 919 272 aa, chain + ## HITS:1 COG:YPO2587 KEGG:ns NR:ns ## COG: YPO2587 COG3718 # Protein_GI_number: 16122800 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized enzyme involved in inositol metabolism # Organism: Yersinia pestis # 1 268 1 268 271 460 81.0 1e-129 MSRLLSRWQQPNGEGRTQSVTPESAGWGYVGFEAYELQEGQQLTLPAVSEERCLVLVAGR ATVTTPGATFTDIGERMSPFERIKPWAVYVTSGEAIQVQALTKLELAVCAAPGKGTYPTR LIAPQDIDGEARGKGHNQRYVHNILPEDKPADSLLVVEVWTNEGCTSSYPSHKHDTDNPP QETYLEETYYHRLNPEQGFCMQRVYTDDRTLDECMAVYNRDVVMVPKGYHPVATMAGYDS YYLNVMAGPVRRWMFTWEEDHAWINRDYQSDK >gi|283548476|gb|GG730301.1| GENE 386 434662 - 435018 362 118 aa, chain - ## HITS:1 COG:no KEGG:ROD_31501 NR:ns ## KEGG: ROD_31501 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 118 1 118 118 114 87.0 1e-24 MKKTIIALSAILLASPVIAATTHATDNDVAAAHENANTAKEKLHQAQNQGEEQKLKAKHA AEGKQDDLSSKVSEDSQKAWNTTKEGTEKGWNATKEGTEKVWNKTKEGAASVEKKISE >gi|283548476|gb|GG730301.1| GENE 387 435609 - 436472 292 287 aa, chain + ## HITS:1 COG:no KEGG:KPN_02965 NR:ns ## KEGG: KPN_02965 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 265 1 265 266 477 87.0 1e-133 MLSTLPDLHRSFAEQLKLKFQSDSRIHSLLAGGSLVHGGFDQYSDLDFVVVVDPLYYDEI MAQRRELAGTLGHLLHAFTGEHVGEPRLLICLYGPELLHVDLKFVTLEMLIQRVEEPAVL FTRDSTALERQLAKFSAHWPNMTPEWFESRAWIWLHYAVVKLGRGELFEAIGMLAFFREQ VLGPMLSRRVNLPQRGVRRIEFHGIDPDGLLASTLATHDRDSVSVAIRMAVDAYINLRAD ALPENIADDAARRAVLAMLKAYSDQVPSYRQHPGCRQQCSRKISALY >gi|283548476|gb|GG730301.1| GENE 388 437255 - 440158 146 967 aa, chain - ## HITS:1 COG:no KEGG:Hoch_1040 NR:ns ## KEGG: Hoch_1040 # Name: not_defined # Def: hypothetical protein # Organism: H.ochraceum # Pathway: not_defined # 23 744 22 746 900 148 23.0 1e-33 MSREKAFEKFKTLQENYITHKETLFEANEAEIRLLMIDEILQILGWKKEEFTPEAFCGTS GYADYILSIERNPRLVVEAKKIGVTFGLPTSSLTSNEYTVSYFKKAFKKKLTDVIDQAQR YCVEKAVQYAVITNGAEWLVCPMLPKPGKTIDSMKGIYFGNLFNGEFSFDLMYDLMSKDS IHNNNLDNYLSELNYSPSEVCYILKDHFNNFTWDSNKDNEWIDDFYQNFFSQITEKNQRK MLEHCFVSDSKLDQFKGEIKRALKDSKPSFLPNDALDLSPSEGKDFILEHNTGKVIIITG AVGCGKTTLVTKCLVEARQSKNIYATPIIIDLINDVSKHSIDVKNIVFDYLYEKIKNDYE TEFTLDELRVTFAHELKVLKNGAYKEIFNKNPESFILKEAELLEKESSNKKNMVLRIFKK RARENKSVIIIIDNVDRAAESFQEEIYALSHLITQESGATVIITLREFTFFKNKDKGFLD VRPEDKIIHLKSPDFNKLISTRIKYIKEHLGEDYRIKDWRKKYQLDKFLERMNFYADVLR KNLQLSNESIPILEILSSVAWHNIRTFYQLIKHVHYQLGNKITWRKQDIISTLTYHPDHT EKAYIPNVYLPYQNINQCYYLKLRILSFLNDAVSPGETSRGISLDRVMKFASLYGYKKQW IVKAIEGSVKERIIECIELPSDSDLNIEYNVQPSHTFRISPLGTCLILDICHTPIYLSLS SIHLPFHEKKPYNEAKDELNKLVNSIYNDRTINNNHEIIDLVEHSKMPSLISSYLSSEYE KEKLSLSILKTQTDVFLTEKRISKLIASFNYTNEINEDNSCNKEKTNQINLSFNFDDINE PINTDITYGDKEVPSTIKPLSLNEAMSRGSEYIPLIFVALVIRAYLGHEASIGTEITEAI NDHLVSEDNKKFTNNVSRALRSSALTKQKWLLIRTDLHHKFRKFSLSNDWQSQWEEIFNE SPPEIQL >gi|283548476|gb|GG730301.1| GENE 389 440423 - 441292 725 289 aa, chain - ## HITS:1 COG:STM2760 KEGG:ns NR:ns ## COG: STM2760 COG0582 # Protein_GI_number: 16766072 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1 287 1 287 291 498 95.0 1e-141 MSRLAQDMKKLAHRAGGSHKTVHDREQIAQRFARHLLAQNIQVTSTSQLKASHIAGYIHE RLEQGISLRTLQNEMAMVRSILAEAGRTHLSQSELISNQSLGISGASRDGTHRAIPDALY HQVLDRVHHIDAGLAASLQLARVMGLRGQEAVQCCQSLKTWDKQLEKGAERLSVIFGTKG GRPRMTQVTDREAVRQAVKEALNIAGERDGHLIDKPDLKSAMDYWHNHLRDAGLTGEYSP HSLRYAWAQDAIRYYEEQGLSRKEALAVTSTDLGHGDGRGRYIERVYIK >gi|283548476|gb|GG730301.1| GENE 390 442323 - 442553 233 76 aa, chain + ## HITS:1 COG:STM3034 KEGG:ns NR:ns ## COG: STM3034 COG4456 # Protein_GI_number: 16766336 # Func_class: S Function unknown # Function: Virulence-associated protein and related proteins # Organism: Salmonella typhimurium LT2 # 4 76 3 75 75 112 72.0 1e-25 MEKTTVFRSNRSQAVRLPKAVALPEDVKHVDIVAVGRTRIITPAGESWDSWFDGESVTSD FMAAREQPGDQDREGF >gi|283548476|gb|GG730301.1| GENE 391 442553 - 442957 524 134 aa, chain + ## HITS:1 COG:PSLT106 KEGG:ns NR:ns ## COG: PSLT106 COG1487 # Protein_GI_number: 17233504 # Func_class: R General function prediction only # Function: Predicted nucleic acid-binding protein, contains PIN domain # Organism: Salmonella typhimurium LT2 # 1 132 1 132 132 210 75.0 4e-55 MLKYMLDTNICIYTIKNKPQAVREAFNQHYGRMCISSVTLMELIYGAEKSASPEKNLRVV EGFIARLEVLNYGIDAAVQTGQIRAELARAGTPVGPYDSMIAAHARALGLILVTNNTREF ERINGLRLEDWSIS >gi|283548476|gb|GG730301.1| GENE 392 443176 - 443709 169 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086315|ref|ZP_06355397.2| ## NR: gi|291086315|ref|ZP_06355397.2| hypothetical protein CIT292_10042 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_10042 [Citrobacter youngae ATCC 29220] # 1 177 126 302 302 261 100.0 1e-68 MLEWCIAIAILAISATFSGMNSVVITLHSNNKYALLFGVFLSLLCGISIFINTSLSRKLS KAKESPVNINTFRSLLVLTGALIVCVWQHEFDISFTLGYHLLIFSFWFVLIPQLALQGCI KNLGTSITTIGIALSPLCSIFVQIVVFNIPISPPAIVLLTLNVLLLIMLMVRQKKSA >gi|283548476|gb|GG730301.1| GENE 393 444081 - 445100 229 339 aa, chain - ## HITS:1 COG:no KEGG:Bcep18194_B1165 NR:ns ## KEGG: Bcep18194_B1165 # Name: not_defined # Def: hypothetical protein # Organism: Burkholderia_383 # Pathway: not_defined # 123 332 129 337 343 167 41.0 7e-40 MIKNPSMPDKAVSFLLFRNIASRLWSSYQHILDVTGNNNSKLASLVNKHAKDKKPSPFFV AAHHLLVQYYVNKTPLINPSLIEELLEIEDYTHHNEMDILPFYEESSSTQDRVCRWALIS DQSDTYPSYIHNHDYLLTPCSNKRSYCVSKNLLQYAIQIIELADKKLYEETRFIVDEIRL FDAVNVRAGTGFNTLGLVYIGEIKDGDNVSRYIEHVVHEAAHNLLYAHWANTPLLINETD DLYFTPFRKDHRPMSAIYHAMFVLCRTIYAFDKIYKTDKALIDFSAIRSNYNEQGNDTPF KIKFFQTVDVIKKHAKLSKAGKNILEGCIDMVSKTTLEI >gi|283548476|gb|GG730301.1| GENE 394 445111 - 446007 110 298 aa, chain - ## HITS:1 COG:SSO2810 KEGG:ns NR:ns ## COG: SSO2810 COG2421 # Protein_GI_number: 15899526 # Func_class: C Energy production and conversion # Function: Predicted acetamidase/formamidase # Organism: Sulfolobus solfataricus # 42 258 49 272 318 90 31.0 4e-18 MARKIEIPCFFSHFQKEQSFAIDIDEQEDISFRTLDNLGYNDELDKEFEELNPLSGPFLL KNAIRGDLIEITIKNIHITRDIGLSSCGILPKYLKKNNALPILGEEVVFWKVEDKVCTPF ICEKITNQSIKLTPSIGCIRCSGDENDKIISSLECDEYGGNLDFIKLNENAKIYLPVLTN NAWFYIGDVHAAQSEAEIGGSGIEVSAEVTLSVSVVKNGLSKKMHLLENNNIHFFGFGNN LSHSLKSAFDEALSCLRKKNGNDALSRLLISQSAKINVIKLESPVIVSISLEQSLYFK >gi|283548476|gb|GG730301.1| GENE 395 446036 - 446953 249 305 aa, chain - ## HITS:1 COG:no KEGG:Bcep18194_B1164 NR:ns ## KEGG: Bcep18194_B1164 # Name: not_defined # Def: hypothetical protein # Organism: Burkholderia_383 # Pathway: not_defined # 1 274 15 276 280 140 29.0 8e-32 MELFSFSDTGKSVVILDIGARIIHDDPPIYDYLIQNTHCEVIAVDADPDACKQQIKSMQD NVFLIKNVVLGDGKPHSFNKCSLPPCSSILEPNRHVLTQYSGMMPFYEVESIEQVNTLTL DSEFRDIFPDLLKIDVQGYELNILQNGKNVLESTSAIHIEVGFIEKYKGQPLFRDIDHFL SEQGFQFHCFTGYGTRTPAGIYANNDPISGVNQWLWSDAVYYHRLDDIEWWLREDRLLRM ALVFHYVWQSYDYAAHCLKTYDKANKTEYLSRYILSLNENTTIDLHISTGIDENKILSDF IARQN >gi|283548476|gb|GG730301.1| GENE 396 448051 - 450120 1812 689 aa, chain - ## HITS:1 COG:STM2745 KEGG:ns NR:ns ## COG: STM2745 COG5519 # Protein_GI_number: 16766057 # Func_class: L Replication, recombination and repair # Function: Superfamily II helicase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 689 1 689 689 1340 96.0 0 MKRAPFLCKQSPDRTLEVVILAGSLAWETSRAWRKDPDREDDIPPVVLGPDELADLDNLT IIRPDTLYVRVLRTGDIREEDLMKIAVKLAHAGVQMARLMSPDGELLENWTGQLARLRQE RPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLE WHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTYISTRPALRSLLCEYISRSLPGRRV TCVEKTGWHNGVYVLPDEVIGPSGDSVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNS RLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGN ALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLF STGELSLAEHTERAGERLYAGMDVRMVQIPSDTGNHGAFEQLHGFASGQQFADTLCDRVA RFHGTAFRAWLAFLTHDQDASTTLARELLRRYQTALMPENAGNQVQRIVARFALLAVAGE MATLQGITGWQEGTAYGAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASW DGPDRPLNMVGFRRVEKDPLTGEEHTLFHILPEGWREMCRGFSPAKAARLCLEAECLLPG SDGKYQSQVRLPEIGKARVYRLTSRILSI >gi|283548476|gb|GG730301.1| GENE 397 450156 - 450371 227 71 aa, chain - ## HITS:1 COG:STM2744 KEGG:ns NR:ns ## COG: STM2744 COG3311 # Protein_GI_number: 16766056 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 71 1 71 71 117 95.0 6e-27 MKTRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKNTDFPRPVHLSSRLVVFDAAEI RQWQQRRTAIR >gi|283548476|gb|GG730301.1| GENE 398 450900 - 453017 235 705 aa, chain - ## HITS:1 COG:no KEGG:Swoo_0596 NR:ns ## KEGG: Swoo_0596 # Name: not_defined # Def: hypothetical protein # Organism: S.woodyi # Pathway: Nucleotide excision repair [PATH:swd03420]; Mismatch repair [PATH:swd03430] # 1 703 1 705 707 858 64.0 0 MLTNEIKELEVQKSVINHVDNFNSFRFNAGAGAGKTYALIETLKYVTINKIIATRSSQKI ACITYTNVAVNEIKKRLGNSEVVHVSTIHEMLWDIIKRAQPQLLICHKEKIINVIDDNKK ELNHSEKAKFFINLDEPKKQEFIQYIFQTKDIFYHYKDHSAASFRKAYGDSTIEKPSHLD SFLKNVSNFKFVVSIFYKIQRLEECLARIESNKENRVYYDSKVNIDRLHYMKFSHDTLLE YGLKLVKTYPMLCRIIIDSYPYFFIDEYQDTNSHVVGFFKTLYDFSNQNNKKWMVGYFGD TAQCIYDDGVGENITKLHSGLYEIDKIFNRRSHQQIIDVANKIRADKIVQIPISSESNKG SVIFSHHQSKEKLEIAKEFLSHYKSYLAQTSKGRDNDDCKIHCLVLTNRLMAQFNDFENV YQAYQNSMIYHENLNTQVLSKQLEKLHPTILIIYNLTKLYQDILQNNVSYHCIFGTYGEG LSFSSANSILRELQNKEIVSLNDWIELITDRLEYSEAKSSLEKILINRINSDKEKTVSPH LFKSAIINSINVLMNSMSEDETVAEGKIQSILSLPIKSLMNWINFIDGTEIGDIIYHTYH GTKGEEYNNVAIILEHSFGNKDKLKFKNYFKFLQENKESRAHLLTDDIFKEKHNNTKNLL YVACSRAIKNLRILYLDDISEIKEGIESIFGQSNLWLSDSDNITV >gi|283548476|gb|GG730301.1| GENE 399 453004 - 455334 186 776 aa, chain - ## HITS:1 COG:PA1939 KEGG:ns NR:ns ## COG: PA1939 COG3593 # Protein_GI_number: 15597135 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Pseudomonas aeruginosa # 328 545 314 535 665 105 28.0 3e-22 MHLEFLTIKNYRKFRSTDNKVCFVKPEVIDMTTEGEQSKSVIAPSTTLIIGKNNAGKTTV INALKMLCGNEQPLASDFNLSYLNELFSLYKRSYNIDQDTKFEQLETPTLEFTLAIKVDF NDNDLMTNLSPFISISEGESGTSVSIRIVVKIVYSEETAFKEEVKRIFNLKNSEGNTLDH KQQFEMFYLMLSKDTNCFKNEGNLYQTNFIDILGEPAEKFSLKKLINIKEIKANRHLKEG VLSDVFNKIVSFQFTNDTKSRTGLESSIHLINQQISLSVGAKSTDISQVLCEIEHSNKVD LNLSGNVSYDAIMKGLIKYNFIDGEDYIPEDQFGLGYINLLNIIGEIIHFVDSYENKSHF SKVNLLFIEEPEAFMHPHMQEFFIKRIDNAVKKALEIANNSSVIKKTLQCQIAITTHSSH IVNSKIHSSNTFNNLNYLTSIKKCTKAINLTDECVVSSEDNDANEKLKFIKKHIKYKVSE LFFSDAIIFVEGITEETLLHYYLEKHPILSNYYISVFNINGAHGKLYFPLAKQLCVPSLI VTDIDIKREKCEKCKSHKENETCLRCGQQAKNGDIPFRPGTAPTFYQITSLSGRTTTNAT LKELNIKLKDKSEEEAGQLDNIEFFSDENLYVVFQKDPIEGQYATSFEEALILTNYNNDA LNEALNECKPGIYQEILNSSGTKPNKNLISHSYKLQKKLSDSKSDFSNKLLFNFLSAEDI EDLPKLPNYLEDGLKWLAFKIQRDSAPPTNEYGMVVNQDVVIPKIEITAEIADVNK >gi|283548476|gb|GG730301.1| GENE 400 455467 - 456108 486 213 aa, chain - ## HITS:1 COG:no KEGG:KPN_02944 NR:ns ## KEGG: KPN_02944 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 213 1 213 214 350 95.0 3e-95 MTSPIRQNLFERECDMPLLEARHLALLLLGLDAAQPANALPEEHQENYRILHDAISRTIK ATGMVSAPANKRMFYADEMFALAWRLIDDELTPPEIKARSLKAVMKLSRNSRGRKWLKTL GDDALPDLTPSAQPSQRGMHKRDKARENTARLCWLLVQLVVEETGGRYGTSDKPASDLIL QKLKALAQELELSSDGLGRGTFYEVLKMGRDKE >gi|283548476|gb|GG730301.1| GENE 401 456110 - 457357 346 415 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 17 396 16 402 406 137 28 5e-31 MPKQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSL GPYPVVTLAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKR TSDLSEDHAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRL NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCL IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGHFPREVLES ALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGEEEPLRIVEGE >gi|283548476|gb|GG730301.1| GENE 402 457960 - 459150 1191 396 aa, chain - ## HITS:1 COG:STM2692 KEGG:ns NR:ns ## COG: STM2692 COG0845 # Protein_GI_number: 16766006 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Salmonella typhimurium LT2 # 10 396 1 387 387 668 89.0 0 MKTNPHDAAMDDLDIHREHRFSGASRIILLSSLLFAVLGVWAYFGKLDEVSTGSGKVIPS SREQVLQSLDGGILAELTVREGDKVQANQIVARLDPTRSESNVGESAARYRASLASSARL NAEVNDLPLVFPDSLRAWPDLIASETRLYKSRRAQLADSMTELQDALVSVNKELAITQRL EKSGAASHVEVLRLQRQKSDLGLKITDLRSQYFVQAREALSKANAEVDMLAAILKGREDS VTRLTVRAPMRGIVKNIQVTTIGGVIPPNGEMMEIVPIDDHLLIETRLSPRDIAFIHPGQ RALVKITAYDYAIYGGLEGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLENKLGRHFS IVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER >gi|283548476|gb|GG730301.1| GENE 403 459131 - 461317 2120 728 aa, chain - ## HITS:1 COG:STM2691 KEGG:ns NR:ns ## COG: STM2691 COG2274 # Protein_GI_number: 16766005 # Func_class: V Defense mechanisms # Function: ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain # Organism: Salmonella typhimurium LT2 # 1 728 1 726 726 1238 86.0 0 MSDVDSHAEEAIGEHALSQWAQAIAHIASHYRVTCSPGAIQANAPWFAGKSRTLALTQLA RQAGLSWHALDTAKQELNQWQLPVVAELRGGQLMVIEHFNGEDALDVFIIGKEGQRNRLT VAELLPEIVSITALRPLSALKDSRVDRYVSRFKPDWMRELVLQDIRPYLPVMIAAFLINV LSLAGIIFSMQVYDRVIPAQSYPTLYVLSTGILVAVLFSFLLREARTHIMDLLGKRADMR ISDRVFSHALRLRNSAVPRSTGSFISQLRELEQIREMITSSTLSTIVDLPFFFLFIVVLA CIAPPLAWIAPVAALLMILPGLLLQKKLAVLANQAAHESTLRNAVLVESVQGLEDIKLMQ AENRFLQQWNSYIRITGESGLRTHKLTQGLIGWGMSVQSLVYAAIIMFGAPMVIEGTMTT GAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDSIMQLPTETQYDEDRVHQEILH GHYLFENAHFRYHNDDQRVPLRISRLEIMPGERIAILGRNGAGKSTLLQAMAGGVEIIQG DVRLDNLSLAHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHASDAQLFDALEVSGA AAFVKQLAKGLAHPIMEGGNGLSGGQRQSILLARMLLRSPNIVLLDEPSASLDEHTEREF IQRLDQWLGNRTLIVATHRVPVLELVERVVVLKEGQLVMDAPKAQALNTSRAPVPSHGRE WKNENQSA >gi|283548476|gb|GG730301.1| GENE 404 461314 - 462723 1333 469 aa, chain - ## HITS:1 COG:STM2690 KEGG:ns NR:ns ## COG: STM2690 COG1538 # Protein_GI_number: 16766004 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 468 1 468 469 694 82.0 0 MGKVMPVALLLALTLCSMRGNAEDEPQVITSEGLASSQMLPNLDGSVADLPLSPAAPGTL TLTDAVSRAVSWHPSIRESIGKLLSQNEQIDVAKSKYYPQVSAGMNNGYSNTYTDHGFSP ALVISVSQMLYDFGKVASQVRAETAGSAQQQANVLLSIDTIAHATANAIVQVQTWQQMVD AAEEQLAALNGIGRLTRQRNDEGATSLSDVVQTDARIESARSQLAQYQSNLDSSKATLMS YLGWSSLNGISNEFPGKLDSSCDVVKPDDKLVPAVLAAWAQANVAQANLDYANAQMTPTI SLEPSVQHYLNDKYPSHEVLDKTQYSAWVKVEMPLYQGGGLTARRNAASHAVESAQYSIQ RTRLEVRQKLLESRSQAMSLATALQILRRQQRLSEQTRELYQQQYLDLGSRPLLDVLNAE QEVYQARFAELQTQNQLRQLQLNCLYNTGSLRQAFALNNRSIQSVEIQL >gi|283548476|gb|GG730301.1| GENE 405 462795 - 474236 8888 3813 aa, chain - ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 583 905 736 1046 1052 127 32.0 6e-28 MRLLAVVSKLTGVSTNVEASEITLSSPSIVKLSVSREEVSQLTRVNQDLVITLRSGETIT IKNFYVGKGDDQNQLVLEDSNGALWWVQDTDGAFHFQHLDDLTPLMTAEGSHQGGAVWPW VLGGIAAAGGIAAIASSSGGGDGHNNSNNGLGSGNPGGGTNPGGDTAPGGNNSGDTTPPT PPETLVVSPDGTMLTGLAEPDSTVVIKDAQGNIVGQGKADSDGKFTIDLNPPKLSGEHLT VTATDAAGNTSASAGVDAPDVPLPMTPVFSEAIDDLAPVTGSIASNQFTNDNTPTLQGTG TPGSTIHIYVDGKETGTTMVDSNGKWSFAVATPLADGEHSFTAIATNLKGSSGESTHFTL NIDTQTPDTPVLDALMDKTGSITGLLIHNKPTDEARPTLSGSGEAGNTITIREGDSILGS IVVDSNGRWSFIPTTTLSEGSHTFTIQQTDRAGNISELAITPTIIVDTSPPPAAVVDSVS VDGTTVTGHAEIGSTVSIYDTDNNLLGLAVTGEDGVFSILLNPAKTHGEMLETRIQDEAG NNGPAGQFTASNSRFPSQPIIITVSDDIGSVTGTLKNGDATDDNRPTISGTAEPGSLITI NDNGVPMPTIPPVIADGDGKWSFTPSQPLPDGDHLFTATATNNFGTSGQSISFAVDIDTQ PPVLEDLEVINRGTTLTGSTEAGSTVVIKDGQGNVLGSGKAASDGSFAIAISPAKTNGET LTISVTDKASNTGPVETLKVPDISPPAPPSGLIVAADGESVSGQAEPGSTVIIKDVTGNV LGTGIANGSGQFIALLNSPQTNGEALTATAKDVAQNESLPSTVLAADTTAPLAPKDVTVS LDGTSVTGTAEPGSSITITAPNGSTIGTGKTGSDGHFTVPLSPAQTNGETVSVTATDSAK NESPAQTAVAPDITAPDKPIILQVWDDVEGDTGPLTSGQTTNDNRPTLSGTAEAGSTVEI FDNGVSIGLAVMQPNGSWSFTPQSDLGEGKHQLTVVATDAKNNASPATLFELIVDTQSPQ MPVITHVTDDKPGIVGSVANNGLTNDNTPTINGTGEPGSLVHLMRDGQLIADITVDNSGA WSYTLPQALSDNTYEFTVTASDSHGNTTNPSAGFTITIDGTPPVAPDFSAILDADDNPID ISKPTNSSQPQLTGSGTAGDTITLYDNGKPIGETTVGEDGSWQFTPPAVLGDGTHELTAT ASDPAGNEGPKSTSLTLQVDTNAPNAPQILSATIVVGTENVVLANGSITNQETPLLSGTG EPGATITLYNNGIEVDTVPVNPQGKWTYQPTANLSEGLNVITATATDAAGNVSPLSGVYS ITIDTVPPAKPDAPLVTDNVAPVIGNVSDNGATNDTTPTFSGKGEPGSTITLYNNGSEIG QTTVGDNGNWSFTPGALAPNTTYVITTTETDIAGNISDPSDPVTLTIDITAPTTPTIEFA TDDDGVPESNFINNATTDDNTPVIHGTGEAGSIITLFNGAAILGVATVDSFGNWEFPIAS ALLDGTYTLTAVAKDAAGNPSDTSNSFTFTVDTVPLQAPVVTEILDDVAPVIGSLSDGSF TNDQTLTINGTAEPGSTVTIYDNNAIIGTANVIDGKWTFTTPALSEATHALTFSAQDGGG NTTAQTPAITITVDITPPPDPTIQTVSPDGTRVSGLADPFATVEIRDASGTLIGTATANN SGEFTVTLSPAQTNGSELTAKATDRAGNASGEVTFDASDSGLPGVPVITAIDDNIGSVQG NILTAGGRTDDTTPTLRGTTETGSTVEVFINDISAGLATVDASGNWTFAVPTLPGEGSYS FTVQATNGNGTGGLSTPIAITVDLTASQQPTIVNAVDDVPGYTGSLANNALTNDPRPTLN GTGEAGATITVFDNNNPIGTTTVDQNGSWSFTPGNPLSNDQHVFTASATDSAGNTGAVSG SFTLTIDAQAPNVPAMTSVIDDNNQPNVSVLPGQVTDDRRPVLNGTGEADATINIFDNGV LLGTTVVAPGGTWSWTVNSDLTEGSHNLTVSATDPAGNTSAASSAWNIVVDVTPPAVPTL TSVVDDQPGLTGNLVSGQLTNDATPTLNGRGEVGATINIWLDGGTTPIGTAIVDGTGAWS FTPGTPLTNGNHTFTLSATDPAGNTSALSGGFTLNVDATPPVAPVITSVADNTAPVIGVV PNGGSTNETRPTITGTGEAGSTIAIYNGASLVGTALVQASGNWSFTPTNALAAGTWNLTA KATDTAGNTGPASDVRSFIIDTTAPAAPVITTVFDDQGPLTGNLSNGQITDDARPTFSGT SEPYATIRIFDNGSLLTEITANSSGNWSYTPAPAMATGNHVITVTAIDAAGNASPASDSF TFVVDTTAPLLPVITLVTDDMAPGIGAITNGQSTNDPTPTFSGTAEAGATITLYENNTVL GTTTVLANGTWSVTTSTLGSGTHTITAVATDAAGNASPPTGGFTLTVDTSAPATPTLATV VDDVAGGAFGNLNNGQTSNDSRPTLNGTAEVGSTVSVYDGNTLLGTTTAGAGGAWTFTPG TPLSDGSHTLTVTATDAAGNNSPATDSFVIIVDTTAPGVPVIVSIIDDVPNITGAVGNGQ STNDTLPTLNGTAEANSTVNIFDNNTLVASVTANASGNWTWTPTAALGQGTHAYTVNATD AAGNVSITSPISSIVVDTLAPGAPTGLTINATGNRVTGTAEAGSTVTITSGNGTVLGTAT ADGAGSFVVTLSPAQTSGQALLAFAQDKAGNTGVSTGFTAPDTRVPDAPTIVSVVDDFGI YTGIIANGQVTNDALPTLNGTAQANAIISIYNNGALLGTTQADPSGVWSFTPGSNLTEGL HAFTATATNANGTGAASGAATVVVDTLAPNTPTGILSADGGSLTGQAEANSTVTVTIPGA GTYTTTAGSNGVWSLTLPTKQIEGQTLGITATDAAGNTSGPLSITAPILPLSANDNVTSL ALTTTATTSSQSYSDYGLLLVGALGNVASVLGNDTAQVQFAIADGGFGNVTIDAAATGIV LSLLSTQEIVVQRFDATLGAWNTIINTAVGDFANLLTLTGSGVTLNLTGLTGGQYRVLTY NTSLLATGSYTSLDVDVHQTSAGVVSGPTVNTGNVMADDVTPTGTTLTSVTDASGKTTVV GASGADIKGQYGTLHINQDGSYRYTLTDTRTAVYGQKESFTYTITQGNNSSSAHLVINLG PAPAATTVIATDNNAALVFDTSVSYVNNGPSAQSGLTVLSVGVGTVLNANLLDDMTNPII FNVEEGSTRTMTIQGTVGGVTLASTFDLYIYRFNDAIQQFEQYRVQKGWINTLLLNGNSQ PLTVTLPGGEYLFVLNTASGISALTGYTLNISQDHTYVVDSTTANTAGNVLTNDIAPPDA VITEVNGVAVSASGNTTINGLYGTLLIDAKGNYTYTLKNGIGADSIKSPDSFVYTLRAQN GDTDTASLNITPTPQVLNAVDDVSGVMAVSTVQDSAAYGSGALGTATIPTLGSKATATGS FDIATNDVLKNATLNFDINTLITVGTLGVTWTITGPGGYTLSGSVPASSISLLGSSIAVS LGNAELTAGHYTVSFTGTMGGLAVGNVSITPNVTGTTWHLNTYDVNTTTVNGNIFDGSDA AGAHDQLSTVHTLLTVNGYNGSTATLNPTGSTSSATIQGHYGSLTMNLDGSYTYTLKPGT TVASMTTKETFTYTLNDQNGHTDTATLTINMNPQLASSSQHDVIIGSAYGDTLIYHLLNA NNATGGNNSDNWTNFSLAQGDKIDIHELLSGWNHQASTLGNYVQVTTIGSNTVIAIDRDG TGGTYQSTNLITLENVNTTLNELLQNNHLITGG >gi|283548476|gb|GG730301.1| GENE 406 474801 - 475283 522 160 aa, chain - ## HITS:1 COG:STM2688 KEGG:ns NR:ns ## COG: STM2688 COG0691 # Protein_GI_number: 16766003 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Salmonella typhimurium LT2 # 1 160 1 160 160 303 97.0 8e-83 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD GEAFLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRMNRDGYTVVALSLYWKN AWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKNAGR >gi|283548476|gb|GG730301.1| GENE 407 475438 - 475881 443 147 aa, chain + ## HITS:1 COG:ECs3481 KEGG:ns NR:ns ## COG: ECs3481 COG2867 # Protein_GI_number: 15832735 # Func_class: I Lipid transport and metabolism # Function: Oligoketide cyclase/lipid transport protein # Organism: Escherichia coli O157:H7 # 1 143 14 156 158 281 97.0 2e-76 MPQISRTALVPYSAEQMYQLVNDVKSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISK TFTTRNQLTSNQSILMHLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFG RIFKELASNMVQAFTVRAKEVYSVSVG >gi|283548476|gb|GG730301.1| GENE 408 475865 - 476161 285 98 aa, chain + ## HITS:1 COG:yfjF KEGG:ns NR:ns ## COG: yfjF COG2914 # Protein_GI_number: 16130537 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 2 98 6 102 102 142 85.0 1e-34 MSASAKIVVEVAYAQPEKQYLQRVTLQQGATVEEAIRASGLLELRNDIDLSKNKVGIYSR PVKLADVLHDGDRVEIYRPLIADPKELRRQRAEKSAKK >gi|283548476|gb|GG730301.1| GENE 409 476211 - 476555 400 114 aa, chain - ## HITS:1 COG:STM2685 KEGG:ns NR:ns ## COG: STM2685 COG2913 # Protein_GI_number: 16766000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Small protein A (tmRNA-binding) # Organism: Salmonella typhimurium LT2 # 1 111 1 111 112 200 96.0 6e-52 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVAKVRTGMTQQQVAYALG TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALTDNK >gi|283548476|gb|GG730301.1| GENE 410 476705 - 478366 1801 553 aa, chain - ## HITS:1 COG:STM2684 KEGG:ns NR:ns ## COG: STM2684 COG0497 # Protein_GI_number: 16765999 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Salmonella typhimurium LT2 # 1 553 1 553 553 935 93.0 0 MLAQLTISNFAIVRELEIDFQNGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRAGAT RADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQLREL GQLLIQIHGQHAHQLLTKSEHQKSLLDGYANEASLTQEMAARYQRWHQSCRDLAHHQQQS QERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQQALAILADGEDV NLQSQLYTAKHLVTELAGMDGKLSGILDMLEEATIQLSEASDELRHYCERLDLDPNRLFE LEQRISKQISLARKHHVSPEALPQFYQSLLDEQQQLDDQADSLETLTLAVNNHHQQALET AKKLHLQRQHYAQELGQLITESMHTLSMPHGLFCIDVKFEEHHLNADGADRVEFKVTTNP GQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKMLRQL GESTQVMCVTHLPQVAGCGHQHFYVSKETDGSMTETRMQPLDKRSRLQELARLLGGSEVT RNTLANAKELLAA >gi|283548476|gb|GG730301.1| GENE 411 478452 - 479453 919 333 aa, chain - ## HITS:1 COG:yfjB KEGG:ns NR:ns ## COG: yfjB COG0061 # Protein_GI_number: 16130534 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Escherichia coli K12 # 42 333 1 292 292 606 98.0 1e-173 MNFSAFFRIHLANLDYYGDKIQGFKGSTHIVTNLRYKDLEKMNKHFKCIGIVGHPRHPTA LTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAVVVGGDGNMLGA ARTLARYDIKVIGINRGNLGFLTDLDPDNAHQQLADVLEGHYISEKRFLLEAQVCQQDCQ KRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPIL TPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVL IRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF >gi|283548476|gb|GG730301.1| GENE 412 479452 - 480045 856 197 aa, chain + ## HITS:1 COG:ECs3476 KEGG:ns NR:ns ## COG: ECs3476 COG0576 # Protein_GI_number: 15832730 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Escherichia coli O157:H7 # 1 197 1 197 197 276 86.0 2e-74 MSSKEQKTPEGQAPEEIIMDQHEEVEAVEPDASAEQVDPRDEKIANLEAQLAEAETRERD SVLRIKAEMENLRRRTELDVEKAHKFALEKFVNELLPVLDSLDRALEVADKDNEAMAAMI EGIELTRKSMLDVVAKFGVQVVADIDVPMDPNVHQAIAMVESDDVAAGNVLMVMQKGYTL NGRTIRAAMVSVAKAKG >gi|283548476|gb|GG730301.1| GENE 413 480096 - 481385 1488 429 aa, chain - ## HITS:1 COG:yfjDm KEGG:ns NR:ns ## COG: yfjDm COG4536 # Protein_GI_number: 16132248 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorB # Organism: Escherichia coli K12 # 20 428 12 420 420 737 94.0 0 MEHISTTTLIVTLLIMVVISAYFSGSETGMMTLNRYRLRHRAKQGNRQAKRVEKLLRKPD RLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALY PEKVAYPSSVLLAPLQILMMPLVWLLNTITRLLMRMMGIKTDIVVSGSLSKDELRTLVNE SRSQISRRNQDMLLSVLDLEKVSVDDIMVPRSEIIGIDINDDWKSIVRQLSHSPHGRIVL YRDSLDDTISMLRVREAWRLMAEKKEFTKETMLRAADEIYYVPEGTPLSTQLIKFQRNKK KVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGSANVREI NKAFNWHLPEDDARTVNGIILEALEEIPVAGTRVRIGQYDIDILDVQDNMIKQVQVLPVK PLRESVADQ >gi|283548476|gb|GG730301.1| GENE 414 481404 - 482195 819 263 aa, chain - ## HITS:1 COG:STM2678 KEGG:ns NR:ns ## COG: STM2678 COG4137 # Protein_GI_number: 16765993 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 263 1 263 263 428 95.0 1e-120 MPVFALLALVAYSVSLALIIPALLQKNSGWRRMAILSAVVALVSHAFALEARILPGGESG QNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLAFATFMPNEFITHLEA TPGMMIHIGLSLFAYATLIIAALYALQLAWIDYQLKNKKLAFSNEMPPLMSIERKMFHIT QIGVVLLTLTLCTGLFYMHNLFSTENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWF NVAGAVILTLAYFGSRILQQFVS >gi|283548476|gb|GG730301.1| GENE 415 482361 - 483722 1685 453 aa, chain + ## HITS:1 COG:ECs3473 KEGG:ns NR:ns ## COG: ECs3473 COG0541 # Protein_GI_number: 15832727 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Escherichia coli O157:H7 # 1 453 1 453 453 795 99.0 0 MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAV GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETLFVVDAMTGQDAANTAKAFNEAL PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQI PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIATGCGMQVQDVNRLLKQF DDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR >gi|283548476|gb|GG730301.1| GENE 416 483938 - 484222 458 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161502226|ref|YP_001569338.1| 30S ribosomal protein S16 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] # 1 94 1 94 94 181 95 6e-44 MGPGVLFTQEDVMVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEE GTRLDLDRIAHWVGQGATISDRVATLIKAANKAA >gi|283548476|gb|GG730301.1| GENE 417 484200 - 484241 49 13 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|213976642|ref|ZP_03403901.1| 30S ribosomal protein S16 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] # 1 13 77 89 89 23 69 2e-36 KQQTKQLNLSRWS >gi|283548476|gb|GG730301.1| GENE 418 484241 - 484789 192 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199] # 11 177 2 160 179 78 29 4e-13 MSKQLAAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL ESWKHHNQDLIIKLKGVDDRDSANLLTNCEIVVDSSQLPALEEGSYYWKDLMGCQVVTTE GYDLGKVVDMMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDP GF >gi|283548476|gb|GG730301.1| GENE 419 484867 - 485601 473 244 aa, chain + ## HITS:1 COG:STM2674 KEGG:ns NR:ns ## COG: STM2674 COG0336 # Protein_GI_number: 16765989 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Salmonella typhimurium LT2 # 1 244 12 255 255 456 97.0 1e-128 MFRAITDYGVTGRAVKNGLLNIQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAI HAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDERVIQTEIDEEW SIGDYVLSGGELPAMTLIDSVSRFIPGVLGHEASAIEDSFADGLLDCPHYTRPEVLEQME VPAVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQQQHKH DGMA >gi|283548476|gb|GG730301.1| GENE 420 485641 - 485988 568 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|152971456|ref|YP_001336565.1| 50S ribosomal protein L19 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] # 1 115 1 115 115 223 99 1e-56 MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRSRGLHSAFT VRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRERTGKSARIKERLN >gi|283548476|gb|GG730301.1| GENE 421 485891 - 486106 73 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLNVVVLFVKLNCTTCVSVLVSLLVSKSVLTKIRASDILLEKGWPKGWPFFYRNIYSGE ETDCRGILHAL >gi|283548476|gb|GG730301.1| GENE 422 486128 - 486610 581 160 aa, chain - ## HITS:1 COG:yfiB KEGG:ns NR:ns ## COG: yfiB COG2885 # Protein_GI_number: 16130526 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli K12 # 1 160 1 160 160 260 78.0 7e-70 MLKRLLSPFFLLLLIVAGCQAPQGKFTPEQIAAMKSYGFTEVSGDWSLGLSDNILFDKND YKLRPESEKQIQEMASKLAATGLNHARLDGHTDNYGEDSYNEALSLKRANVVADAWAQGA NIPRTNLTTQGLGKKYPIASNQTSKGRAENRRVAVVIATP >gi|283548476|gb|GG730301.1| GENE 423 486623 - 487762 876 379 aa, chain - ## HITS:1 COG:STM2672_2 KEGG:ns NR:ns ## COG: STM2672_2 COG2199 # Protein_GI_number: 16765987 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Salmonella typhimurium LT2 # 212 376 1 165 168 289 86.0 7e-78 MTLIWLLLSISSVLALRQYAQKNLDLTAATMTRTLEAALVFSDGVAATETLAALGQQGQF SVAEVRNKNQNVIATWRYDAQDTTEKISGLISHWLFPQPVTQPILHNGNVIGEVRLTARD SVISHFIYLSLAVLTGCILLASGIALMLTRYLHNGVVEALQNITEVVHDVRTNRNFSRRV SEERIEEFHLFAQDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSSINA LMNDDAARSSSALLFLDGDNFKFINDTWGHAAGDRVLIELAKRLSEFGGDRHHPYRLGGD EFAMVLYSVHSEYEVQRVCAALSQEFNRPFDLHNGHLACMTLSIGFALTWEHASAEKLQE LADQNMYQAKHLRSERIIK >gi|283548476|gb|GG730301.1| GENE 424 487839 - 488357 156 172 aa, chain - ## HITS:1 COG:no KEGG:CKO_03923 NR:ns ## KEGG: CKO_03923 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 172 10 181 181 259 79.0 2e-68 MSYSYRLILLLALLLTGLPLYAQSVTEEAKSVRAMVSGIVSYTRWPALSGLPKLCIFSSS RFSSVLEDTSAGALPYLPVIIRPEQEILVSQCDGFYFGKESPTYQVELKNKYPTKALLLI AEQNPECVIGSAFCLIIKDEDVRFSVNMDSLSRSGVRVSPDVLMLARNKKHG >gi|283548476|gb|GG730301.1| GENE 425 488516 - 488890 319 124 aa, chain - ## HITS:1 COG:no KEGG:CKO_03922 NR:ns ## KEGG: CKO_03922 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 124 1 124 124 199 73.0 3e-50 MKQLISTLLILLLSGCQIDPYTHAPTWTGTDWYDAGIQDAISGYTVKDNETLADNYNDPE VDRAKYLKGYAEGQRKICQPDFVYARGLTGKTFPASCDTVENVDQLHSAWQKGETEGLTS IRLN >gi|283548476|gb|GG730301.1| GENE 426 489106 - 490176 1142 356 aa, chain + ## HITS:1 COG:aroF KEGG:ns NR:ns ## COG: aroF COG0722 # Protein_GI_number: 16130522 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Escherichia coli K12 # 1 356 1 356 356 681 95.0 0 MQKDALNNVHITDEQVLMTPEQLKAEFPLSQAQEAQISRSRKTISDIIAGRDPRLLVVCG PCSIHDPETAIEYARRFKALAAEVSDNLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDV EAGLKIARQLLLELVNMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGL SMPVGFKNGTDGSLATAINAMRAAAQSHRFVGINQAGQVALLQTQGNPDGHVILRGGKAP NYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPAVAESVIAQIKDGNRSIIGL MIESNIHEGNQSSEQPRSTMKYGVSVTDACISWEMTDALLREISQDLNGQLSARVA >gi|283548476|gb|GG730301.1| GENE 427 490187 - 491308 1287 373 aa, chain + ## HITS:1 COG:STM2669_2 KEGG:ns NR:ns ## COG: STM2669_2 COG0287 # Protein_GI_number: 16765984 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Salmonella typhimurium LT2 # 101 373 1 273 273 525 94.0 1e-149 MVAELTALRDQIDEVDKALLDLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAE AEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIVGGGGQMGRLFEKMLTL SGYQVRILEQQDWDRAQEIVSDAGMVIVSVPIHVTEQVIAKLPRLPSDCILVDLASVKNG PLQAMLAAHDGPVVGLHPMFGPDSGSLAKQVVVWCDGRQPEAYQWFLEQIQVWGARLHRI SAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDP QLYADIIMSSESNLALIKRYYQRFGEAIGLLEQGDKQAFIDSFRKVEHWFGDYAKRFQSE SRTLLRQANDSRP >gi|283548476|gb|GG730301.1| GENE 428 491402 - 492562 1242 386 aa, chain - ## HITS:1 COG:ECs3462_2 KEGG:ns NR:ns ## COG: ECs3462_2 COG0077 # Protein_GI_number: 15832716 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Escherichia coli O157:H7 # 105 386 1 282 282 540 93.0 1e-153 MTSENPLLALRDKISTLDEKLLALLAERRGLAVEVGKAKLLSHRPVRDIDRERDLLDRLI QLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPHSARVAFLGPKGSYSHLAA RQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGGINDVYDLLQHTSLSI VGEMTITIDHCVLVSGTTDLETIDTVYSHPQPFQQCSKFLSRYPHWKIEYTESTSAAMEK VAQANSPRVAALGSEAGGVLYGLQVLEHIEANQSQNITRFVVLARKAINVSDQVPAKTTL LMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDIQANLESPQMQKALK ELGEITRSMKVLGCYPSENVVPVDPS >gi|283548476|gb|GG730301.1| GENE 429 492602 - 492736 79 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MWEALLFVFAFFITRRNASHSGEGKKECEEERDKFHVISFGYDS >gi|283548476|gb|GG730301.1| GENE 430 492813 - 493151 533 112 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803120|ref|NP_289151.1| translation inhibitor protein RaiA [Escherichia coli O157:H7 EDL933] # 1 112 1 112 113 209 92 1e-52 MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFIADATINTPNGH LVASAKHEDMYTAINDLINKLERQLNKVQHKGEARRATTSVKDANFVEAEEE >gi|283548476|gb|GG730301.1| GENE 431 493421 - 494158 827 245 aa, chain - ## HITS:1 COG:ECs3458 KEGG:ns NR:ns ## COG: ECs3458 COG4105 # Protein_GI_number: 15832712 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Escherichia coli O157:H7 # 1 245 1 245 245 461 98.0 1e-130 MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWKQAITQLEALDN RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD DSALQGFFGVDRSDRDPQHARAAFNDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS VAEYYTARGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA NSSNT >gi|283548476|gb|GG730301.1| GENE 432 494290 - 495270 1145 326 aa, chain + ## HITS:1 COG:STM2662 KEGG:ns NR:ns ## COG: STM2662 COG0564 # Protein_GI_number: 16765978 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Salmonella typhimurium LT2 # 1 326 1 326 326 603 93.0 1e-172 MAQRVELTATVSENQLGQRLDQALAELFPDYSRSRIKEWILDQRVLVNGHLCDKPKEKVL GGEQVSINAEIDEEVRFEPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT AGGTVEEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM AHITHPLVGDQVYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAP IPQDMVELIEVMRADFEEHKDDIAWL >gi|283548476|gb|GG730301.1| GENE 433 495348 - 495998 569 216 aa, chain + ## HITS:1 COG:yfiH KEGG:ns NR:ns ## COG: yfiH COG1496 # Protein_GI_number: 16130514 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 216 28 243 243 402 87.0 1e-112 MPPYDSLNLGAHCGDNPEHVEENRKRLFAAGNLPAKPVWLEQVHGKDVLKLTGEPYSSKR ADASYSNTPGTVCAVMTADCLPVLFCNRAGTEVAAAHAGWRGLCAGVLEETVACFADKPE NILAWLGPAIGPNAFEVGAEVRAAFMAHDPQADLAFVPRADKYLANIYQLARQRLANVGV TNLYGGERCTFSESETFFSYRRDNTTGRMASFIWLI >gi|283548476|gb|GG730301.1| GENE 434 496128 - 498701 1871 857 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 857 1 811 815 725 46 0.0 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQL RTAIDQALSRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRG TLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQALKKYTVDLTERAEQGKLDPV IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK PALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRII QLKLEQQALMKESDEASKKRLDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIKAELE QAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEIAEVL ARWTGIPVARMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDLIQERFGELDYSHMKDMVLGVVSHNFRPEFINRIDEVVVFHPLGEKHIASIAQIQLQ RLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVP GKTIRLEVNDDRIVAVQ Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:35:56 2011 Seq name: gi|283548475|gb|GG730302.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld3, whole genome shotgun sequence Length of sequence - 490809 bp Number of predicted genes - 471, with homology - 468 Number of transcription units - 242, operones - 104 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 2 Op 1 . - CDS 1053 - 1310 186 ## SSON_3421 hypothetical protein 3 2 Op 2 8/0.010 - CDS 1307 - 2128 479 ## COG0169 Shikimate 5-dehydrogenase 4 2 Op 3 6/0.124 - CDS 2130 - 2702 242 ## COG0009 Putative translation factor (SUA5) 5 2 Op 4 7/0.031 - CDS 2707 - 3249 147 ## COG0551 Zn-finger domain associated with topoisomerase type I 6 2 Op 5 8/0.010 - CDS 3276 - 3749 617 ## COG2922 Uncharacterized protein conserved in bacteria 7 2 Op 6 . - CDS 3721 - 4845 382 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - Prom 4982 - 5041 2.8 + Prom 4877 - 4936 3.4 8 3 Op 1 26/0.000 + CDS 4975 - 5484 550 ## COG0242 N-formylmethionyl-tRNA deformylase 9 3 Op 2 20/0.000 + CDS 5499 - 6446 708 ## COG0223 Methionyl-tRNA formyltransferase + Term 6463 - 6491 3.0 10 3 Op 3 8/0.010 + CDS 6525 - 7787 1087 ## COG0144 tRNA and rRNA cytosine-C5-methylases 11 3 Op 4 7/0.031 + CDS 7809 - 9185 1155 ## COG0569 K+ transport systems, NAD-binding component + Term 9192 - 9223 1.1 + Prom 9190 - 9249 6.6 12 4 Tu 1 . + CDS 9327 - 9740 371 ## COG1970 Large-conductance mechanosensitive channel - Term 9634 - 9676 4.1 13 5 Op 1 2/0.691 - CDS 9737 - 9955 184 ## COG3036 Uncharacterized protein conserved in bacteria 14 5 Op 2 . - CDS 10014 - 10439 411 ## COG0789 Predicted transcriptional regulators 15 5 Op 3 . - CDS 10418 - 10606 144 ## ECUMN_3767 hypothetical protein - Prom 10636 - 10695 6.0 - Term 10668 - 10693 -0.5 16 6 Op 1 50/0.000 - CDS 10714 - 11097 637 ## PROTEIN SUPPORTED gi|16762869|ref|NP_458486.1| 50S ribosomal protein L17 17 6 Op 2 26/0.000 - CDS 11138 - 12127 1057 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 18 6 Op 3 36/0.000 - CDS 12153 - 12773 1040 ## PROTEIN SUPPORTED gi|227331151|ref|ZP_03834807.1| hypothetical protein CIT292_00499 19 6 Op 4 48/0.000 - CDS 12806 - 13195 667 ## PROTEIN SUPPORTED gi|146313362|ref|YP_001178436.1| 30S ribosomal protein S11 20 6 Op 5 3/0.505 - CDS 13212 - 13568 582 ## PROTEIN SUPPORTED gi|146313363|ref|YP_001178437.1| 30S ribosomal protein S13 - Prom 13614 - 13673 3.9 - Term 13644 - 13685 8.2 21 7 Op 1 . - CDS 13715 - 13831 198 ## PROTEIN SUPPORTED gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36 22 7 Op 2 53/0.000 - CDS 13862 - 15193 1262 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 23 7 Op 3 48/0.000 - CDS 15201 - 15635 715 ## PROTEIN SUPPORTED gi|15803828|ref|NP_289862.1| 50S ribosomal protein L15 24 7 Op 4 50/0.000 - CDS 15639 - 15818 291 ## PROTEIN SUPPORTED gi|16762861|ref|NP_458478.1| 50S ribosomal protein L30 25 7 Op 5 56/0.000 - CDS 15822 - 16325 833 ## PROTEIN SUPPORTED gi|227331144|ref|ZP_03834800.1| hypothetical protein CIT292_00494 26 7 Op 6 46/0.000 - CDS 16340 - 16693 572 ## PROTEIN SUPPORTED gi|16762859|ref|NP_458476.1| 50S ribosomal protein L18 27 7 Op 7 55/0.000 - CDS 16703 - 17236 897 ## PROTEIN SUPPORTED gi|228578221|ref|YP_002846567.1| 50S ribosomal protein L6 28 7 Op 8 50/0.000 - CDS 17249 - 17641 639 ## PROTEIN SUPPORTED gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8 29 7 Op 9 50/0.000 - CDS 17672 - 17977 515 ## PROTEIN SUPPORTED gi|227331140|ref|ZP_03834796.1| hypothetical protein CIT292_00490 30 7 Op 10 48/0.000 - CDS 17992 - 18531 911 ## PROTEIN SUPPORTED gi|206579163|ref|YP_002236292.1| ribosomal protein L5 31 7 Op 11 57/0.000 - CDS 18546 - 18860 513 ## PROTEIN SUPPORTED gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24 32 7 Op 12 50/0.000 - CDS 18871 - 19242 619 ## PROTEIN SUPPORTED gi|16762853|ref|NP_458470.1| 50S ribosomal protein L14 - Prom 19314 - 19373 7.8 - Term 19342 - 19385 10.3 33 8 Op 1 50/0.000 - CDS 19405 - 19659 432 ## PROTEIN SUPPORTED gi|157148887|ref|YP_001456206.1| 30S ribosomal protein S17 34 8 Op 2 50/0.000 - CDS 19659 - 19850 300 ## PROTEIN SUPPORTED gi|16762851|ref|NP_458468.1| 50S ribosomal protein L29 35 8 Op 3 50/0.000 - CDS 19850 - 20260 692 ## PROTEIN SUPPORTED gi|16762850|ref|NP_458467.1| 50S ribosomal protein L16 36 8 Op 4 61/0.000 - CDS 20273 - 20974 1183 ## PROTEIN SUPPORTED gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 37 8 Op 5 59/0.000 - CDS 20992 - 21324 537 ## PROTEIN SUPPORTED gi|161506013|ref|YP_001573125.1| 50S ribosomal protein L22 38 8 Op 6 60/0.000 - CDS 21339 - 21617 483 ## PROTEIN SUPPORTED gi|16762847|ref|NP_458464.1| 30S ribosomal protein S19 39 8 Op 7 61/0.000 - CDS 21634 - 22455 1435 ## PROTEIN SUPPORTED gi|16762846|ref|NP_458463.1| 50S ribosomal protein L2 40 8 Op 8 61/0.000 - CDS 22473 - 22775 491 ## PROTEIN SUPPORTED gi|16762845|ref|NP_458462.1| 50S ribosomal protein L23 41 8 Op 9 58/0.000 - CDS 22772 - 23377 992 ## PROTEIN SUPPORTED gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 42 8 Op 10 40/0.000 - CDS 23388 - 24017 1057 ## PROTEIN SUPPORTED gi|228578236|ref|YP_002846582.1| 50S ribosomal protein L3 43 8 Op 11 . - CDS 24050 - 24361 514 ## PROTEIN SUPPORTED gi|15603281|ref|NP_246355.1| 30S ribosomal protein S10 - Prom 24531 - 24590 6.4 44 9 Tu 1 . + CDS 24740 - 25207 393 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 45 10 Op 1 9/0.010 - CDS 25204 - 25680 649 ## COG2193 Bacterioferritin (cytochrome b1) 46 10 Op 2 2/0.691 - CDS 25752 - 25946 157 ## COG2906 Bacterioferritin-associated ferredoxin - Prom 26046 - 26105 5.6 - Term 26066 - 26107 8.8 47 10 Op 3 . - CDS 26132 - 26497 552 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 26538 - 26597 80.3 48 11 Op 1 30/0.000 - CDS 26601 - 27011 598 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 49 11 Op 2 51/0.000 - CDS 27081 - 29195 2162 ## COG0480 Translation elongation factors (GTPases) - Prom 29219 - 29278 1.6 - Term 29231 - 29266 3.1 50 11 Op 3 56/0.000 - CDS 29292 - 29762 780 ## PROTEIN SUPPORTED gi|227331119|ref|ZP_03834775.1| hypothetical protein CIT292_00469 - Prom 29791 - 29850 3.1 51 11 Op 4 7/0.031 - CDS 29858 - 30232 643 ## PROTEIN SUPPORTED gi|15803855|ref|NP_289889.1| 30S ribosomal protein S12 - Prom 30296 - 30355 4.3 - Term 30268 - 30302 1.5 52 12 Op 1 10/0.000 - CDS 30358 - 30645 295 ## COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur 53 12 Op 2 13/0.000 - CDS 30652 - 31011 271 ## COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur 54 12 Op 3 6/0.124 - CDS 31011 - 31397 411 ## COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction 55 12 Op 4 6/0.124 - CDS 31397 - 32119 744 ## COG2964 Uncharacterized protein conserved in bacteria - Prom 32222 - 32281 5.0 - Term 32241 - 32275 8.1 56 13 Tu 1 . - CDS 32287 - 33129 904 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 - Prom 33220 - 33279 3.9 + Prom 33123 - 33182 3.3 57 14 Tu 1 . + CDS 33362 - 33580 255 ## COG2900 Uncharacterized protein conserved in bacteria + Term 33593 - 33619 0.1 - Term 33625 - 33666 6.3 58 15 Op 1 4/0.361 - CDS 33694 - 34296 504 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 - Prom 34325 - 34384 3.9 - Term 34311 - 34352 2.1 59 15 Op 2 3/0.505 - CDS 34391 - 34591 233 ## COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain 60 15 Op 3 7/0.031 - CDS 34600 - 36405 1055 ## PROTEIN SUPPORTED gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 61 15 Op 4 . - CDS 36405 - 36956 509 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 37039 - 37098 4.8 + Prom 36957 - 37016 2.6 62 16 Tu 1 . + CDS 37089 - 38990 2326 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 39070 - 39099 3.2 - Term 38865 - 38922 -1.0 63 17 Op 1 . - CDS 39059 - 40549 1688 ## COG1488 Nicotinic acid phosphoribosyltransferase 64 17 Op 2 . - CDS 40564 - 41424 814 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 41456 - 41515 3.8 + Prom 41532 - 41591 4.5 65 18 Tu 1 . + CDS 41616 - 42335 518 ## COG1051 ADP-ribose pyrophosphatase + Term 42352 - 42399 1.1 + Prom 42369 - 42428 3.2 66 19 Op 1 5/0.227 + CDS 42480 - 43439 1047 ## COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold 67 19 Op 2 6/0.124 + CDS 43436 - 43654 270 ## COG3089 Uncharacterized protein conserved in bacteria 68 19 Op 3 . + CDS 43707 - 44576 817 ## COG3954 Phosphoribulokinase 69 20 Tu 1 . - CDS 44675 - 45079 465 ## COG1765 Predicted redox protein, regulator of disulfide bond formation 70 21 Op 1 4/0.361 + CDS 45388 - 46020 744 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 46031 - 46069 10.2 71 21 Op 2 . + CDS 46072 - 48159 1984 ## COG1289 Predicted membrane protein + Term 48366 - 48416 3.1 - Term 48059 - 48099 3.0 72 22 Op 1 5/0.227 - CDS 48241 - 49458 1385 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 49482 - 49541 5.4 73 22 Op 2 4/0.361 - CDS 49544 - 50107 567 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 74 22 Op 3 . - CDS 50139 - 50741 616 ## COG2184 Protein involved in cell division 75 22 Op 4 . - CDS 50731 - 50931 87 ## SARI_04144 hypothetical protein 76 22 Op 5 . - CDS 51006 - 51578 601 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 51673 - 51732 8.3 + Prom 51680 - 51739 5.0 77 23 Tu 1 . + CDS 51843 - 53024 1402 ## COG0477 Permeases of the major facilitator superfamily + Term 53066 - 53105 11.4 78 24 Tu 1 . - CDS 53200 - 53472 192 ## SPAB_04323 hypothetical protein - Prom 53707 - 53766 1.7 + Prom 53197 - 53256 4.1 79 25 Op 1 14/0.000 + CDS 53329 - 55872 3037 ## COG1251 NAD(P)H-nitrite reductase 80 25 Op 2 3/0.505 + CDS 55869 - 56195 428 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases + Term 56205 - 56235 5.0 + Prom 56293 - 56352 8.2 81 26 Op 1 3/0.505 + CDS 56379 - 57188 958 ## COG2116 Formate/nitrite family of transporters 82 26 Op 2 . + CDS 57200 - 58573 1345 ## COG0007 Uroporphyrinogen-III methylase + Term 58585 - 58623 9.5 + Prom 58715 - 58774 6.3 83 27 Tu 1 . + CDS 58845 - 59015 155 ## SC3412 putative outer membrane lipoprotein + Term 59045 - 59071 1.0 - Term 59033 - 59059 1.0 84 28 Op 1 6/0.124 - CDS 59083 - 60087 1232 ## COG0180 Tryptophanyl-tRNA synthetase 85 28 Op 2 9/0.010 - CDS 60080 - 60838 874 ## COG0546 Predicted phosphatases 86 28 Op 3 6/0.124 - CDS 60831 - 61508 783 ## COG0036 Pentose-5-phosphate-3-epimerase 87 28 Op 4 6/0.124 - CDS 61526 - 62362 673 ## COG0338 Site-specific DNA methylase 88 29 Tu 1 7/0.031 - CDS 62480 - 63784 1057 ## COG3266 Uncharacterized protein conserved in bacteria - Term 63830 - 63865 0.6 89 30 Op 1 20/0.000 - CDS 63881 - 64969 878 ## COG0337 3-dehydroquinate synthetase 90 30 Op 2 8/0.010 - CDS 65027 - 65548 445 ## COG0703 Shikimate kinase - Prom 65653 - 65712 4.0 - Term 65838 - 65877 5.1 91 31 Op 1 . - CDS 65954 - 67171 942 ## COG4796 Type II secretory pathway, component HofQ 92 31 Op 2 . - CDS 67104 - 67517 211 ## Z4746 hypothetical protein 93 31 Op 3 . - CDS 67507 - 67962 258 ## SSPA3131 hypothetical protein 94 31 Op 4 . - CDS 67946 - 68485 389 ## COG3166 Tfp pilus assembly protein PilN 95 31 Op 5 . - CDS 68485 - 69264 495 ## CKO_04818 hypothetical protein - Prom 69338 - 69397 2.0 + Prom 69302 - 69361 3.4 96 32 Tu 1 . + CDS 69385 - 71937 2718 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein 97 33 Tu 1 . - CDS 72058 - 72618 586 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 72701 - 72760 5.9 + Prom 72660 - 72719 4.1 98 34 Op 1 . + CDS 72939 - 75074 1752 ## CKO_04821 hypothetical protein + Term 75080 - 75125 5.1 99 34 Op 2 4/0.361 + CDS 75137 - 75805 824 ## COG1011 Predicted hydrolase (HAD superfamily) 100 34 Op 3 3/0.505 + CDS 75816 - 76217 442 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 101 34 Op 4 . + CDS 76242 - 77120 1175 ## COG1281 Disulfide bond chaperones of the HSP33 family + Term 77356 - 77390 -0.7 102 35 Tu 1 . - CDS 77223 - 78941 1480 ## STM3499 inner membrane protein - Prom 78964 - 79023 2.0 + Prom 79122 - 79181 4.0 103 36 Tu 1 . + CDS 79320 - 80942 2059 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) + Term 81036 - 81068 3.0 - Term 81019 - 81058 4.9 104 37 Op 1 40/0.000 - CDS 81059 - 82402 1485 ## COG0642 Signal transduction histidine kinase 105 37 Op 2 . - CDS 82408 - 83127 987 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 83229 - 83288 9.2 + Prom 83211 - 83270 4.8 106 38 Op 1 1/0.814 + CDS 83353 - 83826 592 ## COG0782 Transcription elongation factor + Prom 83835 - 83894 4.0 107 38 Op 2 4/0.361 + CDS 83926 - 86259 1629 ## PROTEIN SUPPORTED gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein + Term 86269 - 86317 12.8 + Prom 83835 - 83894 4.0 108 39 Tu 1 4/0.361 + CDS 83926 - 86259 191 ## PROTEIN SUPPORTED gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 + Term 86269 - 86317 12.8 + Prom 86470 - 86529 5.8 109 40 Op 1 22/0.000 + CDS 86633 - 86860 313 ## COG1918 Fe2+ transport system protein A 110 40 Op 2 . + CDS 86879 - 89197 2700 ## COG0370 Fe2+ transport system protein B 111 40 Op 3 . + CDS 89209 - 89445 223 ## SG3931 hypothetical protein + Term 89509 - 89552 8.1 + Prom 89477 - 89536 4.2 112 41 Tu 1 . + CDS 89692 - 90642 539 ## COG5464 Uncharacterized conserved protein - Term 90638 - 90673 4.3 113 42 Tu 1 . - CDS 90686 - 91456 712 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 91487 - 91546 2.8 + Prom 91414 - 91473 1.7 114 43 Op 1 5/0.227 + CDS 91494 - 92177 356 ## COG1040 Predicted amidophosphoribosyltransferases 115 43 Op 2 3/0.505 + CDS 92236 - 92811 730 ## COG0694 Thioredoxin-like proteins and domains + Term 92837 - 92882 2.9 + Prom 93007 - 93066 4.6 116 44 Tu 1 . + CDS 93179 - 94495 1676 ## COG2610 H+/gluconate symporter and related permeases + Term 94738 - 94771 -0.9 - Term 94517 - 94566 7.4 117 45 Op 1 7/0.031 - CDS 94650 - 96737 2315 ## COG1640 4-alpha-glucanotransferase 118 45 Op 2 . - CDS 96747 - 99140 2600 ## COG0058 Glucan phosphorylase - Prom 99356 - 99415 4.6 + Prom 99655 - 99714 1.6 119 46 Tu 1 . + CDS 99773 - 102478 2618 ## COG2909 ATP-dependent transcriptional regulator - Term 102364 - 102415 -0.5 120 47 Op 1 6/0.124 - CDS 102520 - 103278 881 ## COG1349 Transcriptional regulators of sugar metabolism 121 47 Op 2 4/0.361 - CDS 103324 - 104157 742 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 122 47 Op 3 . - CDS 104233 - 104559 448 ## COG0607 Rhodanese-related sulfurtransferase - Prom 104655 - 104714 3.9 + Prom 104660 - 104719 6.8 123 48 Tu 1 . + CDS 104762 - 106270 1878 ## COG0578 Glycerol-3-phosphate dehydrogenase + Term 106513 - 106546 0.5 - Term 106443 - 106488 5.4 124 49 Op 1 10/0.000 - CDS 106493 - 108940 2897 ## COG0058 Glucan phosphorylase 125 49 Op 2 17/0.000 - CDS 108960 - 110393 1381 ## COG0297 Glycogen synthase 126 49 Op 3 7/0.031 - CDS 110393 - 111688 1283 ## COG0448 ADP-glucose pyrophosphorylase 127 49 Op 4 9/0.010 - CDS 111703 - 113679 1603 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases 128 49 Op 5 4/0.361 - CDS 113676 - 115862 2615 ## COG0296 1,4-alpha-glucan branching enzyme - Prom 116017 - 116076 4.5 - Term 116087 - 116116 2.1 129 50 Tu 1 . - CDS 116135 - 117241 1355 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 117299 - 117358 4.5 130 51 Tu 1 . + CDS 117432 - 118025 614 ## COG2095 Multiple antibiotic transporter - Term 118302 - 118341 5.2 131 52 Op 1 4/0.361 - CDS 118406 - 119707 1714 ## COG2610 H+/gluconate symporter and related permeases 132 52 Op 2 1/0.814 - CDS 119746 - 120237 554 ## COG3265 Gluconate kinase - Prom 120330 - 120389 2.1 133 53 Tu 1 . - CDS 120418 - 121413 1055 ## COG1609 Transcriptional regulators - Prom 121441 - 121500 5.9 134 54 Tu 1 5/0.227 - CDS 121636 - 122331 953 ## COG1741 Pirin-related protein - Prom 122380 - 122439 5.4 135 55 Tu 1 . - CDS 122455 - 123492 1264 ## COG0673 Predicted dehydrogenases and related proteins - Prom 123516 - 123575 1.6 + Prom 123842 - 123901 4.1 136 56 Op 1 . + CDS 123960 - 124448 344 ## PROTEIN SUPPORTED gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase + Term 124455 - 124483 2.3 137 56 Op 2 . + CDS 124494 - 125378 459 ## Bcen_4292 hypothetical protein + Term 125390 - 125431 7.0 + Prom 125388 - 125447 4.0 138 57 Tu 1 . + CDS 125649 - 126764 385 ## COG3157 Hemolysin-coregulated protein (uncharacterized) + Term 126950 - 126990 -0.7 + Prom 126812 - 126871 6.4 139 58 Op 1 . + CDS 127109 - 127318 193 ## EC55989_3852 hypothetical protein 140 58 Op 2 . + CDS 127339 - 127596 128 ## CKO_04863 hypothetical protein 141 58 Op 3 . + CDS 127642 - 127893 125 ## ECS88_4259 hypothetical protein + Term 127937 - 127971 1.5 - Term 127925 - 127958 4.5 142 59 Tu 1 . - CDS 127967 - 129712 1977 ## COG0405 Gamma-glutamyltransferase - Prom 129770 - 129829 2.3 + Prom 129751 - 129810 3.5 143 60 Tu 1 . + CDS 129831 - 130274 432 ## ECO111_4256 hypothetical protein - Term 130197 - 130239 8.8 144 61 Op 1 4/0.361 - CDS 130271 - 131014 793 ## COG0584 Glycerophosphoryl diester phosphodiesterase 145 61 Op 2 21/0.000 - CDS 131011 - 132081 1173 ## COG3839 ABC-type sugar transport systems, ATPase components 146 61 Op 3 38/0.000 - CDS 132083 - 132928 1023 ## COG0395 ABC-type sugar transport system, permease component 147 61 Op 4 35/0.000 - CDS 132925 - 133812 1111 ## COG1175 ABC-type sugar transport systems, permease components 148 61 Op 5 . - CDS 133923 - 135239 1755 ## COG1653 ABC-type sugar transport system, periplasmic component - Prom 135330 - 135389 6.2 - Term 135413 - 135445 4.2 149 62 Op 1 . - CDS 135475 - 135882 237 ## KP1_1290 putative dTDP-glucose pyrophosphorylase - Prom 135914 - 135973 2.0 150 62 Op 2 . - CDS 136023 - 136280 217 ## t3963 hypothetical protein - Prom 136338 - 136397 5.3 - Term 136357 - 136384 1.5 151 63 Op 1 18/0.000 - CDS 136404 - 137135 272 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 152 63 Op 2 19/0.000 - CDS 137135 - 137902 258 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 153 63 Op 3 24/0.000 - CDS 137899 - 139176 1785 ## COG4177 ABC-type branched-chain amino acid transport system, permease component 154 63 Op 4 20/0.000 - CDS 139173 - 140099 1417 ## COG0559 Branched-chain amino acid ABC-type transport system, permease components 155 63 Op 5 . - CDS 140161 - 141270 1372 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - Prom 141433 - 141492 5.1 + Prom 141608 - 141667 3.0 156 64 Tu 1 . + CDS 141694 - 142077 448 ## SSPA3188a hypothetical protein 157 65 Tu 1 . - CDS 142165 - 143268 1330 ## COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - Prom 143390 - 143449 5.5 - Term 143536 - 143575 6.8 158 66 Tu 1 . - CDS 143594 - 144448 1202 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 144566 - 144625 6.6 - Term 144648 - 144709 6.5 159 67 Op 1 28/0.000 - CDS 144719 - 145792 1073 ## COG2177 Cell division protein 160 67 Op 2 9/0.010 - CDS 145770 - 146438 356 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 161 67 Op 3 . - CDS 146441 - 147925 750 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 - Prom 148006 - 148065 4.6 162 68 Op 1 6/0.124 + CDS 148202 - 148798 675 ## COG0742 N6-adenine-specific methylase 163 68 Op 2 . + CDS 148788 - 149063 365 ## COG3776 Predicted membrane protein + Term 149116 - 149156 -0.9 164 69 Tu 1 . - CDS 149116 - 149457 341 ## gi|283835860|ref|ZP_06355601.1| conserved hypothetical protein - Prom 149558 - 149617 3.7 165 70 Op 1 . - CDS 149628 - 150506 473 ## ROD_44041 hypothetical protein 166 70 Op 2 . - CDS 150516 - 150752 137 ## COG3157 Hemolysin-coregulated protein (uncharacterized) - Prom 150801 - 150860 2.0 167 71 Tu 1 . - CDS 151236 - 151595 279 ## EcSMS35_3750 hypothetical protein - Prom 151619 - 151678 4.5 + Prom 151548 - 151607 3.5 168 72 Tu 1 . + CDS 151737 - 152363 765 ## COG3714 Predicted membrane protein + Term 152374 - 152405 3.4 169 73 Tu 1 . + CDS 152574 - 154637 2579 ## COG2217 Cation transport ATPase 170 74 Tu 1 . - CDS 154716 - 154961 418 ## COG0425 Predicted redox protein, regulator of disulfide bond formation - Prom 154984 - 155043 4.7 + Prom 155025 - 155084 5.7 171 75 Op 1 . + CDS 155130 - 155795 793 ## COG1738 Uncharacterized conserved protein 172 75 Op 2 . + CDS 155868 - 156425 748 ## CKO_04902 hypothetical protein + Term 156442 - 156483 7.1 173 76 Tu 1 . - CDS 156429 - 157646 1519 ## COG0477 Permeases of the major facilitator superfamily - Prom 157750 - 157809 4.1 + Prom 157636 - 157695 3.1 174 77 Op 1 1/0.814 + CDS 157779 - 158828 1195 ## COG0628 Predicted permease 175 77 Op 2 . + CDS 158891 - 159481 690 ## COG2091 Phosphopantetheinyl transferase 176 78 Tu 1 . - CDS 159473 - 159979 639 ## COG3479 Phenolic acid decarboxylase - Prom 160058 - 160117 3.2 + Prom 159975 - 160034 3.9 177 79 Op 1 . + CDS 160080 - 160940 1009 ## COG0583 Transcriptional regulator 178 79 Op 2 . + CDS 161032 - 161433 563 ## COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain 179 80 Op 1 45/0.000 - CDS 161531 - 162655 1212 ## COG0842 ABC-type multidrug transport system, permease component 180 80 Op 2 10/0.000 - CDS 162655 - 165402 2967 ## COG1131 ABC-type multidrug transport system, ATPase component 181 80 Op 3 . - CDS 165399 - 166442 1089 ## COG0845 Membrane-fusion protein - Prom 166463 - 166522 2.6 182 81 Tu 1 . - CDS 166878 - 167276 104 ## gi|283835879|ref|ZP_06355620.1| hypothetical protein CIT292_10281 - Prom 167488 - 167547 5.2 - Term 167474 - 167514 3.2 183 82 Tu 1 . - CDS 167560 - 168753 1081 ## COG2081 Predicted flavoproteins - Prom 168846 - 168905 3.9 + Prom 168826 - 168885 4.4 184 83 Tu 1 . + CDS 168983 - 170482 1650 ## COG0306 Phosphate/sulphate permeases + Term 170492 - 170545 9.3 185 84 Tu 1 . - CDS 170547 - 170828 176 ## CKO_04942 universal stress protein UspB - Prom 171031 - 171090 4.9 + Prom 171087 - 171146 7.3 186 85 Tu 1 . + CDS 171275 - 171712 670 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 171761 - 171804 5.2 + Prom 171832 - 171891 5.1 187 86 Tu 1 . + CDS 171994 - 173466 1904 ## COG3104 Dipeptide/tripeptide permease + Term 173509 - 173561 -0.0 188 87 Tu 1 . - CDS 173551 - 174054 636 ## COG1959 Predicted transcriptional regulator - Prom 174139 - 174198 6.4 + Prom 174195 - 174254 6.1 189 88 Tu 1 . + CDS 174287 - 175486 1077 ## COG1252 NADH dehydrogenase, FAD-containing subunit 190 89 Op 1 5/0.227 - CDS 175869 - 176618 834 ## COG0500 SAM-dependent methyltransferases 191 89 Op 2 . - CDS 176626 - 178668 2737 ## COG0339 Zn-dependent oligopeptidases - Prom 178720 - 178779 3.3 + Prom 178684 - 178743 2.0 192 90 Tu 1 . + CDS 178877 - 179719 906 ## COG2961 Protein involved in catabolism of external DNA 193 91 Tu 1 . + CDS 179824 - 181176 503 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Term 181203 - 181245 10.8 194 92 Tu 1 . - CDS 181263 - 182426 1174 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily + Prom 182463 - 182522 4.9 195 93 Tu 1 . + CDS 182610 - 183536 693 ## COG0583 Transcriptional regulator - Term 183548 - 183591 7.4 196 94 Tu 1 . - CDS 183602 - 184996 1314 ## COG1858 Cytochrome c peroxidase - Prom 185033 - 185092 4.5 197 95 Tu 1 . + CDS 185423 - 187072 1370 ## COG1626 Neutral trehalase + Term 187080 - 187111 4.1 - Term 187018 - 187044 1.0 198 96 Tu 1 . - CDS 187100 - 188689 867 ## CKO_04959 hypothetical protein + Prom 188951 - 189010 2.4 199 97 Tu 1 . + CDS 189033 - 189383 223 ## COG3772 Phage-related lysozyme (muraminidase) 200 98 Tu 1 . - CDS 189402 - 190004 418 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Prom 190228 - 190287 5.9 + Prom 189955 - 190014 4.2 201 99 Tu 1 . + CDS 190183 - 190362 92 ## gi|283835900|ref|ZP_06355641.1| hypothetical protein CIT292_10301 - Term 190316 - 190367 10.2 202 100 Tu 1 . - CDS 190378 - 191136 716 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - Prom 191167 - 191226 2.8 + Prom 191141 - 191200 3.2 203 101 Op 1 3/0.505 + CDS 191255 - 192154 896 ## COG0583 Transcriptional regulator 204 101 Op 2 4/0.361 + CDS 192202 - 193227 1179 ## COG1295 Predicted membrane protein + Term 193273 - 193305 0.7 + Prom 193357 - 193416 5.7 205 102 Tu 1 . + CDS 193577 - 194899 1609 ## COG0477 Permeases of the major facilitator superfamily + Term 194903 - 194957 1.4 206 103 Op 1 4/0.361 - CDS 194943 - 197003 1703 ## COG2982 Uncharacterized protein involved in outer membrane biogenesis 207 103 Op 2 . - CDS 197081 - 197848 635 ## COG2200 FOG: EAL domain - Prom 197911 - 197970 4.6 + Prom 197993 - 198052 3.3 208 104 Tu 1 . + CDS 198078 - 199007 1008 ## COG0524 Sugar kinases, ribokinase family 209 105 Tu 1 . - CDS 199101 - 200552 1508 ## COG0612 Predicted Zn-dependent peptidases - Prom 200572 - 200631 1.8 - Term 200765 - 200802 6.1 210 106 Tu 1 . - CDS 200817 - 202103 1405 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 202193 - 202252 3.7 211 107 Tu 1 . - CDS 202261 - 204228 1614 ## COG2200 FOG: EAL domain - Prom 204296 - 204355 3.9 - Term 204407 - 204443 7.0 212 108 Tu 1 . - CDS 204494 - 204634 94 ## EC55989_3988 toxic polypeptide, small - Prom 204786 - 204845 2.2 213 109 Tu 1 2/0.691 + CDS 205027 - 206223 830 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 206291 - 206334 1.3 214 110 Tu 1 . + CDS 206341 - 207639 1055 ## COG0814 Amino acid permeases - Term 207533 - 207563 -0.4 215 111 Tu 1 . - CDS 207673 - 208830 890 ## COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - Prom 208991 - 209050 6.0 - Term 208998 - 209030 3.0 216 112 Op 1 44/0.000 - CDS 209052 - 210056 792 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 217 112 Op 2 44/0.000 - CDS 210053 - 211036 574 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 218 112 Op 3 49/0.000 - CDS 211047 - 211949 1357 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 219 112 Op 4 38/0.000 - CDS 211959 - 212978 342 ## PROTEIN SUPPORTED gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 - Prom 213030 - 213089 3.7 - Term 213028 - 213068 -0.2 220 112 Op 5 . - CDS 213145 - 214752 2084 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 214773 - 214832 3.2 - TRNA 215659 - 215735 85.1 # Pro CGG 0 0 - Term 215619 - 215649 4.3 221 113 Tu 1 . - CDS 215827 - 217521 1347 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase - Prom 217551 - 217610 6.7 - Term 217792 - 217827 2.4 222 114 Tu 1 . - CDS 217856 - 219058 1821 ## COG0477 Permeases of the major facilitator superfamily - Prom 219096 - 219155 2.2 223 115 Tu 1 . - CDS 219310 - 220011 478 ## COG5571 Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion - Prom 220058 - 220117 3.3 + Prom 219956 - 220015 4.3 224 116 Op 1 5/0.227 + CDS 220171 - 220740 363 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 225 116 Op 2 . + CDS 220730 - 221170 548 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 221233 - 221267 6.0 226 117 Tu 1 . - CDS 221139 - 223445 1898 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - Prom 223501 - 223560 6.3 + Prom 223460 - 223519 3.1 227 118 Tu 1 . + CDS 223630 - 224292 864 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - Term 224038 - 224086 5.0 228 119 Tu 1 . - CDS 224328 - 224501 83 ## gi|291086396|ref|ZP_06571488.1| hypothetical protein CIT292_10337 + Prom 224355 - 224414 3.0 229 120 Tu 1 . + CDS 224434 - 225450 1381 ## COG1609 Transcriptional regulators + Term 225514 - 225549 1.0 230 121 Op 1 . + CDS 225566 - 226300 665 ## CKO_05006 hypothetical protein 231 121 Op 2 4/0.361 + CDS 226304 - 227242 1183 ## COG0524 Sugar kinases, ribokinase family 232 121 Op 3 3/0.505 + CDS 227307 - 228587 1433 ## COG0477 Permeases of the major facilitator superfamily 233 121 Op 4 . + CDS 228610 - 229584 1023 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Term 229575 - 229623 12.4 234 122 Tu 1 . - CDS 229643 - 230353 743 ## SPC_3726 hypothetical protein + Prom 230508 - 230567 3.3 235 123 Tu 1 4/0.361 + CDS 230734 - 231024 347 ## COG2944 Predicted transcriptional regulator + Term 231050 - 231080 1.0 + Prom 231076 - 231135 2.9 236 124 Tu 1 . + CDS 231305 - 231517 336 ## COG1278 Cold shock proteins + Term 231539 - 231576 6.2 + Prom 231519 - 231578 4.1 237 125 Tu 1 . + CDS 231704 - 232243 584 ## SPAB_04537 hypothetical protein - Term 232245 - 232285 3.1 238 126 Op 1 19/0.000 - CDS 232357 - 234426 2062 ## COG0751 Glycyl-tRNA synthetase, beta subunit 239 126 Op 2 . - CDS 234436 - 235347 1245 ## COG0752 Glycyl-tRNA synthetase, alpha subunit - Prom 235382 - 235441 5.3 240 127 Tu 1 . - CDS 235443 - 235748 285 ## SARI_03980 hypothetical protein - Prom 235802 - 235861 2.5 241 128 Tu 1 . + CDS 235923 - 236918 1118 ## COG3274 Uncharacterized protein conserved in bacteria - Term 236683 - 236726 -0.7 242 129 Tu 1 . - CDS 236915 - 237280 212 ## COG4682 Predicted membrane protein - Prom 237356 - 237415 5.8 - Term 237406 - 237440 6.0 243 130 Op 1 11/0.000 - CDS 237446 - 238900 1400 ## COG1070 Sugar (pentulose and hexulose) kinases - Term 238912 - 238949 4.2 244 130 Op 2 . - CDS 238971 - 240293 1611 ## COG2115 Xylose isomerase - Prom 240390 - 240449 3.8 245 131 Tu 1 . + CDS 240653 - 241831 1090 ## COG1609 Transcriptional regulators 246 132 Tu 1 . - CDS 241907 - 242479 468 ## COG2992 Uncharacterized FlgJ-related protein + Prom 242746 - 242805 4.7 247 133 Tu 1 . + CDS 243048 - 245078 1893 ## COG0366 Glycosidases + Term 245085 - 245131 9.0 248 134 Tu 1 . + CDS 245213 - 246505 1218 ## COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase - Term 246501 - 246534 4.4 249 135 Op 1 . - CDS 246541 - 247014 297 ## COG1142 Fe-S-cluster-containing hydrogenase components 2 250 135 Op 2 . - CDS 247132 - 247947 861 ## COG1414 Transcriptional regulator - Prom 248040 - 248099 5.9 + Prom 248043 - 248102 4.4 251 136 Op 1 3/0.505 + CDS 248164 - 249162 1205 ## COG2055 Malate/L-lactate dehydrogenases 252 136 Op 2 . + CDS 249174 - 249638 388 ## COG2731 Beta-galactosidase, beta subunit 253 136 Op 3 . + CDS 249651 - 250583 776 ## CKO_05035 hypothetical protein 254 136 Op 4 6/0.124 + CDS 250615 - 251934 1631 ## COG0477 Permeases of the major facilitator superfamily 255 136 Op 5 3/0.505 + CDS 252032 - 253534 1344 ## COG1070 Sugar (pentulose and hexulose) kinases 256 136 Op 6 9/0.010 + CDS 253534 - 254196 878 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 257 136 Op 7 8/0.010 + CDS 254189 - 255049 990 ## COG3623 Putative L-xylulose-5-phosphate 3-epimerase 258 136 Op 8 . + CDS 255043 - 255738 883 ## COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases + Term 255787 - 255829 4.3 - Term 255682 - 255737 2.2 259 137 Tu 1 . - CDS 255743 - 256543 525 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 256645 - 256704 5.4 + Prom 256638 - 256697 8.1 260 138 Op 1 2/0.691 + CDS 256812 - 258212 1430 ## COG2211 Na+/melibiose symporter and related transporters 261 138 Op 2 . + CDS 258223 - 260178 1861 ## COG3533 Uncharacterized protein conserved in bacteria + Term 260374 - 260408 2.7 - Term 260023 - 260072 7.0 262 139 Tu 1 . - CDS 260279 - 261019 528 ## COG3713 Outer membrane protein V - Prom 261112 - 261171 10.1 + Prom 261059 - 261118 11.3 263 140 Tu 1 . + CDS 261141 - 262091 763 ## COG0583 Transcriptional regulator - Term 262041 - 262087 -0.9 264 141 Op 1 . - CDS 262120 - 263256 1109 ## COG1566 Multidrug resistance efflux pump 265 141 Op 2 . - CDS 263262 - 263585 253 ## JW3559 conserved inner membrane protein - Prom 263656 - 263715 6.9 - Term 263702 - 263737 3.1 266 142 Op 1 6/0.124 - CDS 263755 - 265293 1674 ## COG1012 NAD-dependent aldehyde dehydrogenases 267 142 Op 2 2/0.691 - CDS 265386 - 266537 1305 ## COG1454 Alcohol dehydrogenase, class IV - Prom 266607 - 266666 9.8 - Term 266628 - 266666 3.0 268 143 Op 1 7/0.031 - CDS 266723 - 268570 1791 ## COG3276 Selenocysteine-specific translation elongation factor 269 143 Op 2 4/0.361 - CDS 268567 - 269958 1348 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 270 144 Tu 1 . - CDS 270064 - 270672 691 ## COG0625 Glutathione S-transferase - Prom 270825 - 270884 6.2 + Prom 270973 - 271032 5.3 271 145 Tu 1 . + CDS 271053 - 275174 2353 ## COG3209 Rhs family protein 272 146 Op 1 . + CDS 276365 - 276748 59 ## gi|283835972|ref|ZP_06355713.1| conserved hypothetical protein 273 146 Op 2 . + CDS 276749 - 277531 -27 ## COG3209 Rhs family protein + Term 277553 - 277589 -0.5 274 147 Tu 1 . + CDS 278147 - 278731 177 ## ECB_00661 hypothetical protein + Term 278774 - 278817 -0.8 275 148 Op 1 . - CDS 279163 - 280299 1125 ## COG1566 Multidrug resistance efflux pump 276 148 Op 2 . - CDS 280302 - 280664 286 ## SeAg_B3900 inner membrane protein YiaW - Prom 280773 - 280832 4.0 + Prom 280983 - 281042 1.7 277 149 Op 1 11/0.000 + CDS 281195 - 283108 2534 ## COG2213 Phosphotransferase system, mannitol-specific IIBC component 278 149 Op 2 7/0.031 + CDS 283247 - 284395 1502 ## COG0246 Mannitol-1-phosphate/altronate dehydrogenases 279 149 Op 3 . + CDS 284392 - 284982 471 ## COG3722 Transcriptional regulator + Term 285223 - 285262 3.1 280 150 Tu 1 . - CDS 284995 - 285201 213 ## EFER_3593 hypothetical protein + Prom 285326 - 285385 4.8 281 151 Tu 1 . + CDS 285494 - 285856 449 ## ECED1_4285 hypothetical protein + Term 285868 - 285903 6.5 + Prom 286071 - 286130 8.2 282 152 Op 1 . + CDS 286300 - 286941 390 ## SeSA_A3891 hypothetical protein 283 152 Op 2 3/0.505 + CDS 286989 - 290858 3334 ## COG5295 Autotransporter adhesin + Term 290886 - 290924 6.1 + Prom 290955 - 291014 7.6 284 153 Op 1 4/0.361 + CDS 291155 - 292810 2226 ## COG1620 L-lactate permease 285 153 Op 2 5/0.227 + CDS 292807 - 293583 697 ## COG2186 Transcriptional regulators 286 153 Op 3 4/0.361 + CDS 293580 - 294806 1525 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 287 154 Tu 1 . + CDS 294877 - 295350 404 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 295510 - 295542 -1.0 288 155 Tu 1 6/0.124 - CDS 295462 - 296283 916 ## COG1045 Serine acetyltransferase - Term 296294 - 296337 7.1 289 156 Op 1 7/0.031 - CDS 296362 - 297360 1031 ## COG0240 Glycerol-3-phosphate dehydrogenase 290 156 Op 2 9/0.010 - CDS 297381 - 297848 530 ## COG1952 Preprotein translocase subunit SecB 291 156 Op 3 7/0.031 - CDS 297896 - 298147 304 ## COG0695 Glutaredoxin and related proteins 292 156 Op 4 . - CDS 298199 - 298630 456 ## COG0607 Rhodanese-related sulfurtransferase - Prom 298746 - 298805 5.0 + Prom 298785 - 298844 5.9 293 157 Op 1 4/0.361 + CDS 298879 - 300423 1733 ## COG0696 Phosphoglyceromutase 294 157 Op 2 3/0.505 + CDS 300433 - 301716 1291 ## COG4942 Membrane-bound metallopeptidase 295 157 Op 3 . + CDS 301720 - 302652 741 ## COG2861 Uncharacterized protein conserved in bacteria + Term 302826 - 302861 1.0 296 158 Tu 1 . - CDS 302653 - 303690 759 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 303726 - 303785 3.5 - Term 303805 - 303851 9.5 297 159 Op 1 9/0.010 - CDS 303882 - 304907 1096 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 298 159 Op 2 . - CDS 304917 - 306113 1312 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - Prom 306262 - 306321 3.0 + Prom 306221 - 306280 3.8 299 160 Op 1 6/0.124 + CDS 306328 - 307260 1325 ## COG0451 Nucleoside-diphosphate-sugar epimerases 300 160 Op 2 11/0.000 + CDS 307273 - 308319 981 ## COG0859 ADP-heptose:LPS heptosyltransferase 301 160 Op 3 6/0.124 + CDS 308323 - 309291 659 ## COG0859 ADP-heptose:LPS heptosyltransferase 302 160 Op 4 4/0.361 + CDS 309308 - 310588 630 ## COG3307 Lipid A core - O-antigen ligase and related enzymes 303 160 Op 5 3/0.505 + CDS 310585 - 311598 347 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 304 160 Op 6 . + CDS 311600 - 312655 505 ## COG0859 ADP-heptose:LPS heptosyltransferase 305 160 Op 7 . + CDS 312656 - 313600 453 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases + Term 313603 - 313645 6.2 - Term 313597 - 313623 -1.0 306 161 Op 1 5/0.227 - CDS 313628 - 314620 476 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 307 161 Op 2 . - CDS 314668 - 315687 376 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 308 161 Op 3 . - CDS 315718 - 316515 564 ## CKO_05087 hypothetical protein 309 161 Op 4 . - CDS 316508 - 317632 364 ## COG0438 Glycosyltransferase - Prom 317773 - 317832 4.4 + Prom 317867 - 317926 4.5 310 162 Op 1 6/0.124 + CDS 318042 - 319319 912 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase 311 162 Op 2 . + CDS 319328 - 319807 391 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 + Term 319808 - 319855 0.4 - Term 319796 - 319839 10.7 312 163 Op 1 5/0.227 - CDS 319847 - 320656 599 ## COG0266 Formamidopyrimidine-DNA glycosylase - Prom 320679 - 320738 2.5 - Term 320695 - 320736 8.1 313 163 Op 2 16/0.000 - CDS 320754 - 320921 280 ## PROTEIN SUPPORTED gi|146309770|ref|YP_001174844.1| 50S ribosomal protein L33 314 163 Op 3 7/0.031 - CDS 320942 - 321178 402 ## PROTEIN SUPPORTED gi|228578515|ref|YP_002846861.1| 50S ribosomal protein L28 - Prom 321319 - 321378 3.6 315 164 Tu 1 . - CDS 321397 - 322062 586 ## COG2003 DNA repair proteins - Prom 322221 - 322280 2.3 + Prom 322006 - 322065 3.7 316 165 Op 1 5/0.227 + CDS 322234 - 323454 1037 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 317 165 Op 2 4/0.361 + CDS 323432 - 323890 457 ## COG0756 dUTPase 318 166 Tu 1 . + CDS 324007 - 324603 581 ## COG1309 Transcriptional regulator - Term 324535 - 324579 10.3 319 167 Op 1 6/0.124 - CDS 324682 - 325323 701 ## COG0461 Orotate phosphoribosyltransferase - Term 325352 - 325381 2.1 320 167 Op 2 . - CDS 325389 - 326105 791 ## COG0689 RNase PH - Prom 326135 - 326194 4.3 + Prom 326145 - 326204 5.0 321 168 Tu 1 1/0.814 + CDS 326231 - 327094 1025 ## COG1561 Uncharacterized stress-induced protein + Term 327104 - 327151 13.3 + Prom 327163 - 327222 4.0 322 169 Tu 1 . + CDS 327354 - 327971 713 ## COG2860 Predicted membrane protein + Term 327988 - 328033 7.4 323 170 Tu 1 . - CDS 327968 - 329647 894 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Prom 329850 - 329909 3.4 + Prom 329809 - 329868 3.5 324 171 Op 1 25/0.000 + CDS 329911 - 330534 440 ## COG0194 Guanylate kinase 325 171 Op 2 18/0.000 + CDS 330589 - 330864 452 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 326 171 Op 3 5/0.227 + CDS 330883 - 332994 2184 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 327 171 Op 4 4/0.361 + CDS 332999 - 333688 575 ## COG0566 rRNA methylases 328 171 Op 5 . + CDS 333694 - 335775 1990 ## COG1200 RecG-like helicase + Term 336000 - 336036 0.2 - Term 335765 - 335812 1.2 329 172 Tu 1 . - CDS 335815 - 337020 1632 ## COG0786 Na+/glutamate symporter - Prom 337098 - 337157 7.3 + Prom 337163 - 337222 4.2 330 173 Tu 1 . + CDS 337246 - 338637 1678 ## COG2233 Xanthine/uracil permeases 331 174 Tu 1 . + CDS 338759 - 340468 1922 ## CKO_05112 hypothetical protein + Term 340684 - 340721 -0.6 332 175 Op 1 4/0.361 - CDS 340510 - 341187 656 ## COG3822 ABC-type sugar transport system, auxiliary component - Term 341200 - 341227 1.5 333 175 Op 2 1/0.814 - CDS 341237 - 342097 1126 ## COG0191 Fructose/tagatose bisphosphate aldolase 334 175 Op 3 1/0.814 - CDS 342178 - 343029 730 ## COG0191 Fructose/tagatose bisphosphate aldolase 335 175 Op 4 7/0.031 - CDS 343041 - 344132 1399 ## COG1299 Phosphotransferase system, fructose-specific IIC component 336 175 Op 5 8/0.010 - CDS 344159 - 344479 363 ## COG1445 Phosphotransferase system fructose-specific component IIB 337 175 Op 6 5/0.227 - CDS 344499 - 344969 553 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 338 175 Op 7 . - CDS 344996 - 346549 1182 ## COG3711 Transcriptional antiterminator - Prom 346698 - 346757 5.0 - Term 346773 - 346808 1.0 339 176 Op 1 3/0.505 - CDS 346996 - 349314 2669 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 340 176 Op 2 . - CDS 349325 - 350707 502 ## PROTEIN SUPPORTED gi|90020673|ref|YP_526500.1| ribosomal protein L9 + TRNA 350998 - 351088 73.2 # SeC(p) TCA 0 0 + Prom 351000 - 351059 80.3 341 177 Tu 1 . + CDS 351253 - 352437 381 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 + Prom 353717 - 353776 3.8 342 178 Tu 1 . + CDS 353922 - 354281 111 ## gi|283836045|ref|ZP_06355786.1| putative phage head-tail adaptor + Term 354338 - 354373 1.1 + Prom 355345 - 355404 2.8 343 179 Tu 1 . + CDS 355516 - 355989 -69 ## Cag_0690 hypothetical protein + Term 356013 - 356051 2.6 344 180 Op 1 11/0.000 - CDS 356074 - 356868 446 ## COG2801 Transposase and inactivated derivatives 345 180 Op 2 . - CDS 356919 - 357185 349 ## COG2801 Transposase and inactivated derivatives - Prom 357427 - 357486 6.8 - Term 357898 - 357956 3.4 346 181 Tu 1 . - CDS 357979 - 359238 -29 ## Ent638_3102 ATP-dependent OLD family endonuclease + Prom 359751 - 359810 5.1 347 182 Op 1 . + CDS 359949 - 360224 118 ## gi|291086425|ref|ZP_06571504.1| phage immunity repressor protein 348 182 Op 2 . + CDS 360181 - 360384 131 ## KPN_04117 hypothetical protein 349 183 Op 1 . - CDS 360617 - 361663 776 ## PAU_01005 regulatory prophage protein 350 183 Op 2 . - CDS 361675 - 362649 326 ## COG4643 Uncharacterized protein conserved in bacteria 351 183 Op 3 3/0.505 - CDS 362646 - 362894 208 ## COG3311 Predicted transcriptional regulator 352 183 Op 4 . - CDS 362941 - 363819 619 ## COG0582 Integrase - Prom 364030 - 364089 2.2 353 184 Tu 1 . - CDS 364750 - 366219 829 ## COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - Prom 366434 - 366493 10.4 354 185 Tu 1 . + CDS 366770 - 367060 274 ## Ent638_0067 hypothetical protein + Term 367165 - 367197 4.9 + Prom 367183 - 367242 3.3 355 186 Op 1 . + CDS 367399 - 367659 225 ## HDN1F_34890 probable antitoxin, prevent-host-death family protein 356 186 Op 2 . + CDS 367663 - 367965 184 ## COG3668 Plasmid stabilization system protein + Term 368046 - 368102 14.1 - Term 368097 - 368133 5.1 357 187 Op 1 3/0.505 - CDS 368154 - 370958 2823 ## COG3468 Type V secretory pathway, adhesin AidA 358 187 Op 2 . - CDS 371032 - 371445 286 ## COG2771 DNA-binding HTH domain-containing proteins - Prom 371674 - 371733 4.7 359 188 Op 1 . + CDS 372382 - 372999 397 ## CKO_04227 hypothetical protein 360 188 Op 2 . + CDS 372996 - 373460 232 ## CKO_04226 hypothetical protein + Prom 373568 - 373627 4.0 361 189 Tu 1 . + CDS 373802 - 375298 1758 ## COG4690 Dipeptidase - Term 375287 - 375317 -0.5 362 190 Tu 1 . - CDS 375335 - 376237 727 ## COG0583 Transcriptional regulator - Prom 376265 - 376324 2.9 + Prom 376253 - 376312 4.1 363 191 Op 1 1/0.814 + CDS 376342 - 377349 1157 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 364 191 Op 2 . + CDS 377351 - 377656 471 ## COG1359 Uncharacterized conserved protein - Term 377550 - 377584 0.2 365 192 Tu 1 . - CDS 377698 - 378474 187 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 - Prom 378561 - 378620 1.9 + Prom 378431 - 378490 4.8 366 193 Op 1 2/0.691 + CDS 378608 - 379564 851 ## COG0583 Transcriptional regulator 367 193 Op 2 . + CDS 379590 - 380492 933 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 380715 - 380760 4.5 368 194 Tu 1 . - CDS 380519 - 381337 969 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen - Prom 381373 - 381432 4.3 369 195 Tu 1 . - CDS 381462 - 382412 394 ## COG5464 Uncharacterized conserved protein - Term 382427 - 382457 -1.0 370 196 Op 1 . - CDS 382652 - 383395 684 ## SeSA_A3974 hypothetical protein 371 196 Op 2 . - CDS 383382 - 384491 1017 ## COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] 372 196 Op 3 13/0.000 - CDS 384495 - 385352 1066 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 373 196 Op 4 13/0.000 - CDS 385352 - 386101 1138 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 374 196 Op 5 9/0.010 - CDS 386127 - 386612 738 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 375 196 Op 6 3/0.505 - CDS 386625 - 387050 414 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - Prom 387082 - 387141 2.1 376 197 Tu 1 . - CDS 387264 - 390062 2608 ## COG3933 Transcriptional antiterminator + Prom 390095 - 390154 2.8 377 198 Op 1 . + CDS 390189 - 390482 395 ## STM3774 inner membrane protein + Prom 390489 - 390548 3.0 378 198 Op 2 . + CDS 390576 - 390677 77 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase 379 198 Op 3 . + CDS 390681 - 391958 1266 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 392149 - 392191 2.5 - Term 391951 - 392009 6.8 380 199 Tu 1 . - CDS 392015 - 393199 1365 ## COG2814 Arabinose efflux permease - Prom 393232 - 393291 5.0 381 200 Op 1 4/0.361 - CDS 393320 - 393619 337 ## COG1396 Predicted transcriptional regulators 382 200 Op 2 . - CDS 393628 - 393969 265 ## COG4683 Uncharacterized protein conserved in bacteria 383 200 Op 3 . - CDS 394048 - 394575 577 ## ECL_00043 hypothetical protein - Prom 394600 - 394659 1.7 - Term 394622 - 394661 1.2 384 200 Op 4 . - CDS 394674 - 395126 493 ## APECO1_2789 hypothetical protein - Prom 395149 - 395208 2.8 - Term 395220 - 395250 3.3 385 201 Tu 1 3/0.505 - CDS 395275 - 396666 2024 ## COG2271 Sugar phosphate permease - Prom 396701 - 396760 2.6 - Term 396756 - 396797 -0.2 386 202 Op 1 5/0.227 - CDS 396808 - 398136 1638 ## COG2271 Sugar phosphate permease 387 202 Op 2 5/0.227 - CDS 398146 - 399648 1565 ## COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific 388 202 Op 3 1/0.814 - CDS 399645 - 400238 765 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Prom 400300 - 400359 5.1 - Term 400331 - 400367 4.0 389 203 Op 1 32/0.000 - CDS 400391 - 400681 372 ## COG0440 Acetolactate synthase, small (regulatory) subunit 390 203 Op 2 . - CDS 400685 - 402373 2052 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Prom 402859 - 402918 5.4 391 204 Tu 1 . + CDS 403102 - 403191 76 ## + Term 403214 - 403251 6.8 + Prom 403224 - 403283 2.9 392 205 Tu 1 8/0.010 + CDS 403315 - 404148 835 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 404173 - 404202 2.1 + Prom 404190 - 404249 3.7 393 206 Tu 1 . + CDS 404342 - 405526 1347 ## COG0477 Permeases of the major facilitator superfamily + Term 405537 - 405567 3.3 394 207 Op 1 . - CDS 405453 - 406535 802 ## CKO_00018 hypothetical protein 395 207 Op 2 . - CDS 406614 - 407540 836 ## COG0583 Transcriptional regulator - Prom 407567 - 407626 3.0 + Prom 407547 - 407606 3.1 396 208 Op 1 4/0.361 + CDS 407770 - 409107 1744 ## COG2610 H+/gluconate symporter and related permeases 397 208 Op 2 . + CDS 409125 - 410447 1506 ## COG3048 D-serine dehydratase - Term 410353 - 410400 4.0 398 209 Op 1 . - CDS 410460 - 411554 507 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 399 209 Op 2 . - CDS 411569 - 411931 341 ## CKO_00023 hypothetical protein 400 209 Op 3 . - CDS 411921 - 412268 511 ## COG2149 Predicted membrane protein - Prom 412375 - 412434 4.1 + Prom 412270 - 412329 4.3 401 210 Tu 1 . + CDS 412376 - 412825 474 ## ECO103_4480 putative inner membrane protein 402 211 Op 1 4/0.361 - CDS 412942 - 414435 1372 ## COG3119 Arylsulfatase A and related enzymes 403 211 Op 2 . - CDS 414432 - 416147 1590 ## COG4146 Predicted symporter - Prom 416299 - 416358 4.5 + Prom 416225 - 416284 5.0 404 212 Tu 1 . + CDS 416314 - 417177 551 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 417318 - 417357 3.9 - Term 417157 - 417193 0.3 405 213 Tu 1 . - CDS 417228 - 418889 1875 ## COG2985 Predicted permease - Prom 418929 - 418988 3.5 - Term 418964 - 418997 0.3 406 214 Op 1 4/0.361 - CDS 419014 - 419442 532 ## COG0071 Molecular chaperone (small heat shock protein) 407 214 Op 2 . - CDS 419535 - 419948 622 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 420040 - 420099 4.1 408 215 Tu 1 . - CDS 420216 - 420383 72 ## + Prom 420094 - 420153 2.4 409 216 Tu 1 . + CDS 420325 - 420585 132 ## COG5645 Predicted periplasmic lipoprotein - Term 420513 - 420564 0.3 410 217 Tu 1 . - CDS 420587 - 421813 826 ## SEN3627 ATP/GTP-binding protein - Prom 421837 - 421896 3.9 + Prom 421830 - 421889 1.5 411 218 Tu 1 . + CDS 421914 - 423020 649 ## COG0644 Dehydrogenases (flavoproteins) - Term 422966 - 423005 1.0 412 219 Tu 1 . - CDS 423017 - 424309 1014 ## COG0477 Permeases of the major facilitator superfamily - Prom 424354 - 424413 6.3 - Term 424481 - 424517 -0.9 413 220 Op 1 1/0.814 - CDS 424533 - 425681 1376 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 414 220 Op 2 2/0.691 - CDS 425678 - 426295 579 ## COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase 415 220 Op 3 1/0.814 - CDS 426279 - 427157 556 ## COG3734 2-keto-3-deoxy-galactonokinase 416 220 Op 4 . - CDS 427154 - 427843 558 ## COG2186 Transcriptional regulators - Prom 428035 - 428094 8.1 - Term 428040 - 428068 1.3 417 221 Op 1 . - CDS 428096 - 429238 682 ## t3691 hypothetical protein 418 221 Op 2 . - CDS 429235 - 430365 1127 ## SeAg_B4057 outer membrane protein 419 221 Op 3 . - CDS 430371 - 431285 1024 ## SeAg_B4058 hypothetical protein - Prom 431479 - 431538 6.1 - Term 431375 - 431419 3.1 420 222 Tu 1 . - CDS 431555 - 432367 1095 ## COG0561 Predicted hydrolases of the HAD superfamily + Prom 432521 - 432580 5.2 421 223 Tu 1 . + CDS 432642 - 432794 84 ## + Prom 432807 - 432866 6.3 422 224 Op 1 . + CDS 432913 - 434169 686 ## COG0477 Permeases of the major facilitator superfamily 423 224 Op 2 . + CDS 434201 - 434899 537 ## Kvar_4640 oligogalacturonate-specific porin 424 224 Op 3 . + CDS 434965 - 436137 806 ## Entcl_3095 hypothetical protein 425 224 Op 4 . + CDS 436148 - 438091 578 ## Entcl_3096 heparinase II/III family protein + Term 438118 - 438150 4.0 - Term 438101 - 438141 9.2 426 225 Op 1 9/0.010 - CDS 438168 - 440582 3193 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 427 225 Op 2 18/0.000 - CDS 440611 - 441684 1018 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 428 225 Op 3 16/0.000 - CDS 441823 - 442923 1160 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) 429 225 Op 4 . - CDS 442928 - 444331 1323 ## COG0593 ATPase involved in DNA replication initiation + Prom 444783 - 444842 6.9 430 226 Op 1 . + CDS 444937 - 445077 229 ## PROTEIN SUPPORTED gi|188535563|ref|YP_001909360.1| 50S ribosomal protein L34 431 226 Op 2 22/0.000 + CDS 445128 - 445454 223 ## COG0594 RNase P protein component + Prom 445555 - 445614 3.9 432 226 Op 3 10/0.000 + CDS 445678 - 447324 2059 ## COG0706 Preprotein translocase subunit YidC + Term 447377 - 447417 4.7 + Prom 447327 - 447386 1.8 433 226 Op 4 . + CDS 447430 - 448794 1716 ## COG0486 Predicted GTPase + Prom 448834 - 448893 3.2 434 227 Op 1 9/0.010 + CDS 449037 - 450158 1157 ## COG0477 Permeases of the major facilitator superfamily 435 227 Op 2 4/0.361 + CDS 450127 - 451086 875 ## COG0583 Transcriptional regulator + Prom 451164 - 451223 3.9 436 228 Op 1 3/0.505 + CDS 451253 - 451999 430 ## COG2091 Phosphopantetheinyl transferase 437 228 Op 2 . + CDS 452030 - 452596 529 ## COG0431 Predicted flavoprotein + Term 452605 - 452635 5.0 - Term 452587 - 452632 6.4 438 229 Tu 1 . - CDS 452653 - 453990 1891 ## COG2252 Permeases + Prom 453966 - 454025 2.4 439 230 Tu 1 . + CDS 454158 - 454823 668 ## COG0637 Predicted phosphatase/phosphohexomutase - Term 454718 - 454764 -0.9 440 231 Op 1 32/0.000 - CDS 454907 - 455632 861 ## COG0704 Phosphate uptake regulator 441 231 Op 2 41/0.000 - CDS 455647 - 456420 336 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 456448 - 456507 7.4 442 231 Op 3 38/0.000 - CDS 456528 - 457418 1067 ## COG0581 ABC-type phosphate transport system, permease component 443 231 Op 4 39/0.000 - CDS 457418 - 458377 1305 ## COG0573 ABC-type phosphate transport system, permease component - Prom 458447 - 458506 2.2 444 231 Op 5 2/0.691 - CDS 458522 - 459562 1211 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 459718 - 459777 6.6 - Term 459831 - 459880 8.2 445 232 Tu 1 9/0.010 - CDS 459897 - 461726 2563 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 461890 - 461949 4.1 446 233 Tu 1 6/0.124 - CDS 461951 - 463321 1560 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 463569 - 463628 4.6 - Term 463923 - 463959 7.1 447 234 Op 1 42/0.000 - CDS 463980 - 464393 453 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 448 234 Op 2 42/0.000 - CDS 464420 - 465802 1579 ## COG0055 F0F1-type ATP synthase, beta subunit 449 234 Op 3 42/0.000 - CDS 465829 - 466692 1059 ## COG0224 F0F1-type ATP synthase, gamma subunit 450 234 Op 4 41/0.000 - CDS 466743 - 468284 1415 ## COG0056 F0F1-type ATP synthase, alpha subunit 451 234 Op 5 38/0.000 - CDS 468297 - 468830 531 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 452 234 Op 6 37/0.000 - CDS 468845 - 469315 535 ## COG0711 F0F1-type ATP synthase, subunit b 453 234 Op 7 40/0.000 - CDS 469375 - 469614 370 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 454 234 Op 8 8/0.010 - CDS 469661 - 470476 759 ## COG0356 F0F1-type ATP synthase, subunit a 455 234 Op 9 3/0.505 - CDS 470484 - 470864 241 ## COG3312 F0F1-type ATP synthase, subunit I - Prom 470948 - 471007 6.4 - Term 471368 - 471427 7.2 456 235 Op 1 24/0.000 - CDS 471479 - 472102 572 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 457 235 Op 2 5/0.227 - CDS 472209 - 474098 1811 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division - Prom 474191 - 474250 7.8 458 236 Op 1 4/0.361 - CDS 474471 - 474920 398 ## COG0716 Flavodoxins - Prom 474941 - 475000 1.8 459 236 Op 2 . - CDS 475009 - 475467 553 ## COG1522 Transcriptional regulators - Prom 475494 - 475553 4.7 + Prom 475479 - 475538 6.9 460 237 Tu 1 . + CDS 475619 - 476611 1197 ## COG2502 Asparagine synthetase A - Term 476423 - 476461 -0.6 461 238 Op 1 7/0.031 - CDS 476615 - 478066 1190 ## COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 462 238 Op 2 . - CDS 478060 - 479556 1528 ## COG0714 MoxR-like ATPases - Prom 479593 - 479652 4.5 + Prom 479648 - 479707 4.9 463 239 Tu 1 . + CDS 479887 - 481755 2022 ## COG3158 K+ transporter + Term 481763 - 481805 9.3 + Prom 481823 - 481882 3.0 464 240 Op 1 9/0.010 + CDS 481948 - 482367 374 ## COG1869 ABC-type ribose transport system, auxiliary component 465 240 Op 2 21/0.000 + CDS 482375 - 483880 1744 ## COG1129 ABC-type sugar transport system, ATPase component 466 240 Op 3 16/0.000 + CDS 483886 - 484851 1342 ## COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 467 240 Op 4 8/0.010 + CDS 484876 - 485766 1189 ## COG1879 ABC-type sugar transport system, periplasmic component + Term 485862 - 485896 4.2 468 241 Op 1 13/0.000 + CDS 485908 - 486837 879 ## COG0524 Sugar kinases, ribokinase family 469 241 Op 2 . + CDS 486850 - 487833 859 ## COG1609 Transcriptional regulators + Term 488040 - 488077 2.5 470 242 Op 1 5/0.227 - CDS 487799 - 489226 1128 ## COG0477 Permeases of the major facilitator superfamily 471 242 Op 2 . - CDS 489228 - 489932 696 ## COG2186 Transcriptional regulators - Prom 489958 - 490017 3.9 + TRNA 490448 - 490523 59.8 # Glu TTC 0 0 Predicted protein(s) >gi|283548475|gb|GG730302.1| GENE 1 523 - 1077 514 184 aa, chain + ## HITS:1 COG:ECs4145 KEGG:ns NR:ns ## COG: ECs4145 COG0663 # Protein_GI_number: 15833399 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Escherichia coli O157:H7 # 1 184 73 256 256 350 89.0 8e-97 MSDVLRPYKDLFPQIGKRVMIDASSVVIGDARLADDVGIWPLVAIRGDVNYVQIGTRTNI QDGSVLHVTHKSTSNPQGNPLIVGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGVVVED DVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLKYSASNYVKWKDEYLSQSN QTQP >gi|283548475|gb|GG730302.1| GENE 2 1053 - 1310 186 85 aa, chain - ## HITS:1 COG:no KEGG:SSON_3421 NR:ns ## KEGG: SSON_3421 # Name: yrdB # Def: hypothetical protein # Organism: S.sonnei # Pathway: not_defined # 1 84 1 84 85 120 78.0 2e-26 MNQAIQFPDREEWRTDVSAVVFPAMVHGMQLTCAISGEQLASRFGGGTPEQWLESFQQHR WDLEEEAEALIQDQQEDAQGWVWLL >gi|283548475|gb|GG730302.1| GENE 3 1307 - 2128 479 273 aa, chain - ## HITS:1 COG:ECs4147 KEGG:ns NR:ns ## COG: ECs4147 COG0169 # Protein_GI_number: 15833401 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Escherichia coli O157:H7 # 3 273 2 272 272 476 83.0 1e-134 MKEAYAVFGNPIAHSKSPFIHQQFAEQLKIDHSYGRVLAPINDFVNTLNAFFAEGGKGAN VTVPFKEEAFARADELTERASLAGAVNTLKRLEDGRLLGDNTDGIGLLSDLERLSFIHPG SRILLIGAGGASRGVLLPLLSMDCAVTIVNRTASRAEELAQIFSHTGSVQAVGMDELDNY SFDLIINATSSGISGEVPAIPTSLIHSSVYCYDMFYQQGNTPFLAWCAEHGAKWYADGLG MLVGQAAHAFLLWHGVLPQIAPVIKSLQQEMSA >gi|283548475|gb|GG730302.1| GENE 4 2130 - 2702 242 190 aa, chain - ## HITS:1 COG:STM3402 KEGG:ns NR:ns ## COG: STM3402 COG0009 # Protein_GI_number: 16766691 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Salmonella typhimurium LT2 # 1 190 1 190 190 333 89.0 1e-91 MNNNLPTGPIAAAIEVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLIL IAANFDQLKPYIDDSTLTDAQRQAVFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTD HPLVVALCQAYGKPLVSTSANLSGLPPCRTVEEVRAQFGTDFPVVEGETGGRLNPSEIRD ALTGEQFRQG >gi|283548475|gb|GG730302.1| GENE 5 2707 - 3249 147 180 aa, chain - ## HITS:1 COG:STM3403 KEGG:ns NR:ns ## COG: STM3403 COG0551 # Protein_GI_number: 16766692 # Func_class: L Replication, recombination and repair # Function: Zn-finger domain associated with topoisomerase type I # Organism: Salmonella typhimurium LT2 # 1 180 1 180 180 303 86.0 8e-83 MAKSALFTVRKNEPCPQCGAELVIRSGKHGLFLGCSHYPECDYIRPLKSSADGHIVKVLE GKFCPACGAELVLRQGRFGMFIGCSDYPACDHTELIDKPDETAIVCPQCQTGHLVQRRSR YGKTFYSCDRYPECQFVINFKPLAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPIPAE >gi|283548475|gb|GG730302.1| GENE 6 3276 - 3749 617 157 aa, chain - ## HITS:1 COG:STM3404 KEGG:ns NR:ns ## COG: STM3404 COG2922 # Protein_GI_number: 16766693 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 268 97.0 3e-72 MFDVLMYLFETYIHNEAELRVDQDKLERDLTDAGFDREDIYNALLWLEKLADYQDGLAEP MQLASDPLSLRIYTAEECERLDANCRGFLLFLEQIQVLNLETREMVIERVLALDTAEFDL EDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH >gi|283548475|gb|GG730302.1| GENE 7 3721 - 4845 382 374 aa, chain - ## HITS:1 COG:ECs4151 KEGG:ns NR:ns ## COG: ECs4151 COG0758 # Protein_GI_number: 15833405 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Escherichia coli O157:H7 # 1 374 1 374 374 590 78.0 1e-168 MTQIEIWLRLAQVNELYGDEMVRLAHWLNAQPCINNTILQHAGLSSRQAMRFLTFSEQLL EKTLRWLEQPNHHLVVADSEHYPPQLRAIEDYPGVLFVAGTPTCLHSFQVAVVGSRQHSW YGERWGRLFCEKLAAFGVTITSGLARGIDGVAHNAAINRQGASIAVLGNGLETIHPRQHV RLAERLIEAGGALVSEFPLDTLPLPRNFPRRNRIISGLSKGVLVVEAAQRSGSLVTARCA LEQGREVFALPGPIGSPGSEGPHWLIQQGATLVTQPEEILENLQYGLQWLPDEPEKSIYS PDHEEVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVAQLLELELAGWIAAVPGGYVR LRRACHVRRTNVFV >gi|283548475|gb|GG730302.1| GENE 8 4975 - 5484 550 169 aa, chain + ## HITS:1 COG:STM3406 KEGG:ns NR:ns ## COG: STM3406 COG0242 # Protein_GI_number: 16766695 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Salmonella typhimurium LT2 # 1 169 1 169 169 286 97.0 1e-77 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV IDVSENRDEQLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKSFE LEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLNARA >gi|283548475|gb|GG730302.1| GENE 9 5499 - 6446 708 315 aa, chain + ## HITS:1 COG:ECs4153 KEGG:ns NR:ns ## COG: ECs4153 COG0223 # Protein_GI_number: 15833407 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Escherichia coli O157:H7 # 1 314 1 314 315 567 90.0 1e-161 MSDSLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG IPVFQPVSLRPQENQQLVADLHADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG AAPIQRSLWAGDSETGVTIMQMDVGLDTGDMLHKLSCPITADDTSASLYDKLAELGPQGL LHTLQLLASGTAKPEVQDESLVSYAEKLSKEEARVDWTLSAAQLERCIRAFNPWPMSYIV IDEQPVKIWQATVIDTPANAEPGTILEANRQGIQVATGDGILNLISLQPAGKKAMSAQDL LNSRREWFEPGNRLA >gi|283548475|gb|GG730302.1| GENE 10 6525 - 7787 1087 420 aa, chain + ## HITS:1 COG:STM3408 KEGG:ns NR:ns ## COG: STM3408 COG0144 # Protein_GI_number: 16766697 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Salmonella typhimurium LT2 # 1 420 10 429 429 729 84.0 0 MAAQAVEQVVEKGQSLSNVLPAMQQKVADKDKALLQELCFGALRTLSQLEWMIQQLMERP MTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVVIKRPQLKGLINGVLRQFQRRQ EELLTEFAQSDLRFLHPSWLVKRIKAAYPQQWEAILEANNQRPPMWLRVNRNHHTRDAWL ELLAEAGLTGFPHPDYPDAVRLETPAPVLALPGFEQGWVTVQDASAQGCVSYLQPQNGEQ ILDLCAAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKRLGMKATVKQGDGRYPQQ WCGEQQFDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGT LVYATCSILPEENQQQIAAFLARTPDAVLSETGTPEQPGRQNLPDAEDGDGFFYAKLIKK >gi|283548475|gb|GG730302.1| GENE 11 7809 - 9185 1155 458 aa, chain + ## HITS:1 COG:ECs4155 KEGG:ns NR:ns ## COG: ECs4155 COG0569 # Protein_GI_number: 15833409 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Escherichia coli O157:H7 # 1 458 1 458 458 860 98.0 0 MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFDLRVVQGHGSHPRVLRE AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFQSDAVPID HLIAPEQLVIDSIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMRDHMPH IDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSELQRLEKPYKRIMLVGG GNIGAGLARRLEKDYSVKLIERNQQRASELAEKLQNTIVFFGDASDQELLAEEHIDQVDL FIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLS HVRKADIVGVSSLRRGVAEAIEAVAHGDETTSRVVGRSIDEIKLPPGTIIGAVVRGNDVM IANDNLRIEQGDHVIMFLTDKKFITDVERLFQPSPFFL >gi|283548475|gb|GG730302.1| GENE 12 9327 - 9740 371 137 aa, chain + ## HITS:1 COG:ECs4156 KEGG:ns NR:ns ## COG: ECs4156 COG1970 # Protein_GI_number: 15833410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Escherichia coli O157:H7 # 1 137 1 136 136 233 95.0 7e-62 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAIT LRDAQGDIPAVVMHYGVFIQNVFDFIIVAFAIFMAIKLINKLNRKKAEEPAAPPAPSKEE VLLSEIRDLLKEQNNRS >gi|283548475|gb|GG730302.1| GENE 13 9737 - 9955 184 72 aa, chain - ## HITS:1 COG:STM3411 KEGG:ns NR:ns ## COG: STM3411 COG3036 # Protein_GI_number: 16766700 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 67 1 67 89 119 95.0 2e-27 MSRYQHTKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYLRKGKHGNRGNWEASGKKVKH FFTTGLFASVNA >gi|283548475|gb|GG730302.1| GENE 14 10014 - 10439 411 141 aa, chain - ## HITS:1 COG:STM3412 KEGG:ns NR:ns ## COG: STM3412 COG0789 # Protein_GI_number: 16766701 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 140 1 140 141 240 94.0 7e-64 MYRIGELAKLADVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRYARQLGFT LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQAMQRSLQRLNDACCGKAHS SVYCSILEALEQGASGTLSGR >gi|283548475|gb|GG730302.1| GENE 15 10418 - 10606 144 62 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_3767 NR:ns ## KEGG: ECUMN_3767 # Name: yhdN # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 1 53 1 53 122 100 88.0 2e-20 MWLLDQWAERHITAAQSKGEFDDLPGTGEPLTLDDDSHIPPELRAGYRLLKIAERACTVL VN >gi|283548475|gb|GG730302.1| GENE 16 10714 - 11097 637 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762869|ref|NP_458486.1| 50S ribosomal protein L17 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 127 1 127 127 249 100 1e-64 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE KTEAAAE >gi|283548475|gb|GG730302.1| GENE 17 11138 - 12127 1057 329 aa, chain - ## HITS:1 COG:ECs4160 KEGG:ns NR:ns ## COG: ECs4160 COG0202 # Protein_GI_number: 15833414 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Escherichia coli O157:H7 # 1 329 1 329 329 612 99.0 1e-175 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDDVILTLNKSGIGPVTAADITHDGD VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL TEIKDVLASRGLSLGMRLENWPPASIADE >gi|283548475|gb|GG730302.1| GENE 18 12153 - 12773 1040 206 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227331151|ref|ZP_03834807.1| hypothetical protein CIT292_00499 [Citrobacter youngae ATCC 29220] # 1 206 1 206 206 405 100 1e-111 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK VRRIYGVLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAEARQLVSH KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG TFKRKPERSDLSADINEHLIVELYSK >gi|283548475|gb|GG730302.1| GENE 19 12806 - 13195 667 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|146313362|ref|YP_001178436.1| 30S ribosomal protein S11 [Enterobacter sp. 638] # 1 129 1 129 129 261 99 3e-68 MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTP FAAQVAAERCAEAVKEYGIKNLEVMVKGPGPGRESTVRALNAAGFRITNITDVTPIPHNG CRPPKKRRV >gi|283548475|gb|GG730302.1| GENE 20 13212 - 13568 582 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|146313363|ref|YP_001178437.1| 30S ribosomal protein S13 [Enterobacter sp. 638] # 1 118 1 118 118 228 99 2e-58 MARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEEQIDTLRDEV AKFVVEGDLRREVSMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK >gi|283548475|gb|GG730302.1| GENE 21 13715 - 13831 198 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803826|ref|NP_289860.1| 50S ribosomal protein L36 [Escherichia coli O157:H7 EDL933] # 1 38 1 38 38 80 100 8e-14 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG >gi|283548475|gb|GG730302.1| GENE 22 13862 - 15193 1262 443 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 12 440 16 444 447 490 56 1e-137 MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTI IEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYT RYGTLVLAIFQSIGIATGLPNMPGMQGLVMNPGFAFYFTAVVSLVTGTMFLMWLGEQITE RGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERG QRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGW NWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGE QTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQV QTLMMSSQYESALKKANLKGYGR >gi|283548475|gb|GG730302.1| GENE 23 15201 - 15635 715 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803828|ref|NP_289862.1| 50S ribosomal protein L15 [Escherichia coli O157:H7 EDL933] # 1 144 1 144 144 280 100 9e-74 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR LPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPV TVRGLRVTKGARAAIEAAGGKIEE >gi|283548475|gb|GG730302.1| GENE 24 15639 - 15818 291 59 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762861|ref|NP_458478.1| 50S ribosomal protein L30 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 59 1 59 59 116 100 1e-24 MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE >gi|283548475|gb|GG730302.1| GENE 25 15822 - 16325 833 167 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227331144|ref|ZP_03834800.1| hypothetical protein CIT292_00494 [Citrobacter youngae ATCC 29220] # 1 167 1 167 167 325 100 2e-87 MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAI QKAMEKARRNMINVALNHGTLQHPVKGTHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGV RNVLAKAYGSTNPINVVRATIDGLENMKSPEMVAAKRGKSVEEILGK >gi|283548475|gb|GG730302.1| GENE 26 16340 - 16693 572 117 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762859|ref|NP_458476.1| 50S ribosomal protein L18 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 117 1 117 117 224 100 3e-57 MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF >gi|283548475|gb|GG730302.1| GENE 27 16703 - 17236 897 177 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228578221|ref|YP_002846567.1| 50S ribosomal protein L6 [Citrobacter sp. 30_2] # 1 177 1 177 177 350 99 7e-95 MSRVAKAPVVIPAGVDVKINGQVITIKGKNGELTRTLNDAVAVNHADNALTFGPRDGYAD GWAQAGTARALLNAMVVGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHQLPAG ITAECPTQTEIVLKGADKQLIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK >gi|283548475|gb|GG730302.1| GENE 28 17249 - 17641 639 130 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803833|ref|NP_289867.1| 30S ribosomal protein S8 [Escherichia coli O157:H7 EDL933] # 1 130 1 130 130 250 99 6e-65 MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELE LTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGMGIAVVSTSKGVMTDRAARQAG LGGEIICYVA >gi|283548475|gb|GG730302.1| GENE 29 17672 - 17977 515 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227331140|ref|ZP_03834796.1| hypothetical protein CIT292_00490 [Citrobacter youngae ATCC 29220] # 1 101 1 101 101 202 100 1e-50 MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQSLPRDSSPSRQ RNRCRQTGRPHGYVGKFGLSRIKLREAAMRGEVPGLKKASW >gi|283548475|gb|GG730302.1| GENE 30 17992 - 18531 911 179 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|206579163|ref|YP_002236292.1| ribosomal protein L5 [Klebsiella pneumoniae 342] # 1 179 1 179 179 355 100 2e-96 MAKLHDYYKDEVVAKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLTAI SGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAK SFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK >gi|283548475|gb|GG730302.1| GENE 31 18546 - 18860 513 104 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803836|ref|NP_289870.1| 50S ribosomal protein L24 [Escherichia coli O157:H7 EDL933] # 1 104 1 104 104 202 99 2e-50 MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKLIVEGINLVKKHQKPVPALNQPGGIVE KEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK >gi|283548475|gb|GG730302.1| GENE 32 18871 - 19242 619 123 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762853|ref|NP_458470.1| 50S ribosomal protein L14 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 123 1 123 123 243 100 1e-62 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA VVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGPVTRELRNEKFMKIISLAP EVL >gi|283548475|gb|GG730302.1| GENE 33 19405 - 19659 432 84 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157148887|ref|YP_001456206.1| 30S ribosomal protein S17 [Citrobacter koseri ATCC BAA-895] # 1 84 1 84 84 171 100 6e-41 MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGTGDVVE IRECRPLSKTKSWTLVRVVEKAVL >gi|283548475|gb|GG730302.1| GENE 34 19659 - 19850 300 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762851|ref|NP_458468.1| 50S ribosomal protein L29 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 63 1 63 63 120 100 1e-25 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEK AGA >gi|283548475|gb|GG730302.1| GENE 35 19850 - 20260 692 136 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762850|ref|NP_458467.1| 50S ribosomal protein L16 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 136 1 136 136 271 100 4e-71 MLQPKRTKFRKMHKGRNRGLAAGADVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQ GKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLA AAKLPIKTTFVTKTVM >gi|283548475|gb|GG730302.1| GENE 36 20273 - 20974 1183 233 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. Sakai] # 1 233 1 233 233 460 100 1e-128 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK >gi|283548475|gb|GG730302.1| GENE 37 20992 - 21324 537 110 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161506013|ref|YP_001573125.1| 50S ribosomal protein L22 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] # 1 110 1 110 110 211 100 4e-53 METLAQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEH NDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR >gi|283548475|gb|GG730302.1| GENE 38 21339 - 21617 483 92 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762847|ref|NP_458464.1| 30S ribosomal protein S19 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 92 1 92 92 190 100 7e-47 MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPV FVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK >gi|283548475|gb|GG730302.1| GENE 39 21634 - 22455 1435 273 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762846|ref|NP_458463.1| 50S ribosomal protein L2 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 273 1 273 273 557 100 1e-157 MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLVEKNSKSGGRNNNGRITTRHIGGGHKQ AYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV DAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGE MRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNF GKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK >gi|283548475|gb|GG730302.1| GENE 40 22473 - 22775 491 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16762845|ref|NP_458462.1| 50S ribosomal protein L23 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 100 1 100 100 193 100 8e-48 MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNT LVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE >gi|283548475|gb|GG730302.1| GENE 41 22772 - 23377 992 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933] # 1 201 1 201 201 386 100 1e-106 MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPW RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV VEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSL IAFDKVVMTADAVKQVEEMLA >gi|283548475|gb|GG730302.1| GENE 42 23388 - 24017 1057 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228578236|ref|YP_002846582.1| 50S ribosomal protein L3 [Citrobacter sp. 30_2] # 1 209 1 209 209 411 99 1e-113 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRV TKPEAGHFTKAGVEAGRGLWEFRLADGEEYTVGQSISVELFADVKKVDVTGTSKGKGFAG TVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRV DAERNLLLVKGGVPGATGCDLIVKPAVKA >gi|283548475|gb|GG730302.1| GENE 43 24050 - 24361 514 103 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15603281|ref|NP_246355.1| 30S ribosomal protein S10 [Pasteurella multocida subsp. multocida str. Pm70] # 1 103 1 103 103 202 100 2e-50 MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKD ARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG >gi|283548475|gb|GG730302.1| GENE 44 24740 - 25207 393 155 aa, chain + ## HITS:1 COG:ECs4188 KEGG:ns NR:ns ## COG: ECs4188 COG1989 # Protein_GI_number: 15833442 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Escherichia coli O157:H7 # 1 147 1 147 155 176 62.0 1e-44 MYSDLPFLLIYLVLSGLLLVQDLRTGLLPDKFTCPLLWSGLIYHQCCRPAQLSDALWGAV AGYGVFALFYWGYRLIRQHEGLGFGDVKFLAALGAWHQWESLPLLVLLAASLASCMTGLA WVKQGRKVLKNPLPFGPYLAAAGFIIGGIGLMQNG >gi|283548475|gb|GG730302.1| GENE 45 25204 - 25680 649 158 aa, chain - ## HITS:1 COG:STM3443 KEGG:ns NR:ns ## COG: STM3443 COG2193 # Protein_GI_number: 16766732 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin (cytochrome b1) # Organism: Salmonella typhimurium LT2 # 1 158 1 158 158 274 96.0 6e-74 MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLTRLNDVEYHESIDEMKHADKYIE RILFLEGIPNLQDLGKLGIGEDVEEMLQSDLRLELDGAKDLREAIAYADSVHDYVSRDMM IEILTDEEGHIDWLETELDLIAKLGLQNYLQSQIKVSD >gi|283548475|gb|GG730302.1| GENE 46 25752 - 25946 157 64 aa, chain - ## HITS:1 COG:STM3444 KEGG:ns NR:ns ## COG: STM3444 COG2906 # Protein_GI_number: 16766733 # Func_class: P Inorganic ion transport and metabolism # Function: Bacterioferritin-associated ferredoxin # Organism: Salmonella typhimurium LT2 # 1 64 1 64 64 109 96.0 1e-24 MYVCLCNAISDKKIRQAVRQFQPQSFQQLRKFIPVGNQCGKCIRAAREVMQDELTQMPEF KEIA >gi|283548475|gb|GG730302.1| GENE 47 26132 - 26497 552 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 120 287 406 407 217 85 7e-55 NVGVLLRGIKREEIERGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYF RTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVM S >gi|283548475|gb|GG730302.1| GENE 48 26601 - 27011 598 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 137 1 137 407 234 81 3e-60 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI LLGRQVGVPYIIVFLNK >gi|283548475|gb|GG730302.1| GENE 49 27081 - 29195 2162 704 aa, chain - ## HITS:1 COG:STM3446 KEGG:ns NR:ns ## COG: STM3446 COG0480 # Protein_GI_number: 16766735 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Salmonella typhimurium LT2 # 1 704 1 704 704 1355 97.0 0 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG ITITSAATTAFWSGMAKQYEPHRVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ PQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIKTRLGANPVPLQLAIGAEEAFT GVVDLVKMKAINWNEEDAGVTFTYEDIPADMQELADEWHQNLIESAAEASEELMEKYLGG EELSEEEIKKALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPIDVPAINGILD DGKDTPAERHASDDEPFAALAFKIATDPFVGNLTFFRVYSGVVNSGDTILNSVKTARERF GRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDHPIILERMEFPEPVISIAV EPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVE ANVGKPQVAYREAIRAKVTDIEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDI KGGVIPGEYIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIA FKDGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLRGQESNVTGVVIHAEVPL SEMFGYATQLRSLTKGRASYSMEFLKYDDAPNNVAQAVIEARGK >gi|283548475|gb|GG730302.1| GENE 50 29292 - 29762 780 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227331119|ref|ZP_03834775.1| hypothetical protein CIT292_00469 [Citrobacter youngae ATCC 29220] # 1 156 1 156 156 305 100 2e-81 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAETIVYSALETLAQRSGKNELE AFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRL ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW >gi|283548475|gb|GG730302.1| GENE 51 29858 - 30232 643 124 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803855|ref|NP_289889.1| 30S ribosomal protein S12 [Escherichia coli O157:H7 EDL933] # 1 124 1 124 124 252 99 2e-65 MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNG FEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQSRSKYGVK RPKA >gi|283548475|gb|GG730302.1| GENE 52 30358 - 30645 295 95 aa, chain - ## HITS:1 COG:yheL KEGG:ns NR:ns ## COG: yheL COG2168 # Protein_GI_number: 16131222 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in oxidation of intracellular sulfur # Organism: Escherichia coli K12 # 1 95 1 95 95 140 70.0 7e-34 MLHTLHRSAWLTDFSSLLRLIEKDDELLLLQDGVTAAIEGSRFLESLQNASIKVYVLEDD IKARGLSGQISDSVVRVSYTDFVRLTVKHPNQMSW >gi|283548475|gb|GG730302.1| GENE 53 30652 - 31011 271 119 aa, chain - ## HITS:1 COG:STM3450 KEGG:ns NR:ns ## COG: STM3450 COG2923 # Protein_GI_number: 16766739 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in the oxidation of intracellular sulfur # Organism: Salmonella typhimurium LT2 # 1 119 1 118 118 202 84.0 1e-52 MKRVAFVFSTVPHGSASGREGLDALLATSALTEGLGVFFIGDGVFQILQGQQPDVILARD YIATFKLLGLYDIDQCWLCAASLRERGLHQGVNFVVDATALEPEDLRRELGNYDVILRF >gi|283548475|gb|GG730302.1| GENE 54 31011 - 31397 411 128 aa, chain - ## HITS:1 COG:STM3451 KEGG:ns NR:ns ## COG: STM3451 COG1553 # Protein_GI_number: 16766740 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized conserved protein involved in intracellular sulfur reduction # Organism: Salmonella typhimurium LT2 # 1 128 1 128 128 213 85.0 9e-56 MRFTIMVTGPAYGTQQASSALQFAHALLTEGHELCSVFFYREGVYNANFLTSPASDEYDL VRAWQQLNQQYGVMLNICVAAALRRGVVDEAEAKRLGLAGANLQSGFNLSGLGSLAEASL TCDRVVQF >gi|283548475|gb|GG730302.1| GENE 55 31397 - 32119 744 240 aa, chain - ## HITS:1 COG:STM3452 KEGG:ns NR:ns ## COG: STM3452 COG2964 # Protein_GI_number: 16766741 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 240 1 240 240 466 98.0 1e-131 MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCS AIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFTRAKSGVLMKSVTIAIRNR EHRVIGLLCINMNLDVPFSQIMNTFIPPETPEVGSAVNFASSVEDLVTQTLEFTIEEVNA DRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIRQFKSGDFQGQDK >gi|283548475|gb|GG730302.1| GENE 56 32287 - 33129 904 280 aa, chain - ## HITS:1 COG:ECs4198 KEGG:ns NR:ns ## COG: ECs4198 COG0545 # Protein_GI_number: 15833452 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 1 267 1 259 270 382 90.0 1e-106 MKSLFKVTLLATTMAVALHAPITFAADAAKPAAADAAKPAATADSKAAFKNDDQKAAYAL GASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQTFEARVKSS AQAKMEKDAADNEAKGKVYREKFAKEKGVKTSATGLVYKVEKEGTGAAPKDSDTVVVNYK GTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIQLVIPPDLAYGKTGVPG IPANSTLVFDVELLDIKPAPKADAQPEAAPADKAADSSKK >gi|283548475|gb|GG730302.1| GENE 57 33362 - 33580 255 72 aa, chain + ## HITS:1 COG:STM3454 KEGG:ns NR:ns ## COG: STM3454 COG2900 # Protein_GI_number: 16766743 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 72 1 72 72 90 88.0 5e-19 MQDTTMETRLAELESRLAFQEITIEELNVTVTAHELEMAKLRDHLRLLTEKLKATQPSHL ASQSEETPPPHY >gi|283548475|gb|GG730302.1| GENE 58 33694 - 34296 504 200 aa, chain - ## HITS:1 COG:STM3455 KEGG:ns NR:ns ## COG: STM3455 COG1047 # Protein_GI_number: 16766744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Salmonella typhimurium LT2 # 1 151 1 151 196 267 99.0 7e-72 MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALDGHEVGDKFDV AVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITEVEDDHVVVD GNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHGHDHDHDHGHDGCCGGHGHDHGHE HGGEGCCGGGGKGNGGCGCH >gi|283548475|gb|GG730302.1| GENE 59 34391 - 34591 233 66 aa, chain - ## HITS:1 COG:Z4708 KEGG:ns NR:ns ## COG: Z4708 COG3529 # Protein_GI_number: 15803863 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Escherichia coli O157:H7 EDL933 # 1 66 1 66 66 117 93.0 5e-27 MAIRKRFIAGAKCPSCQAQDSLAMWRENNIDIVECVKCGHQMREADKEAREHVRKEEQVI GIFHPD >gi|283548475|gb|GG730302.1| GENE 60 34600 - 36405 1055 601 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845962|ref|ZP_04466074.1| 30S ribosomal protein S2 [Haemophilus influenzae 7P49H1] # 11 590 13 612 618 410 36 1e-113 MEGSDLLTAGVLFLFAAVAAVPLASRLGIGPVLGYLLAGIAIGPWGLGFISDVDEILHFS ELGVVFLMFIIGLELNPAKLWQLRRSIFGVGAAQVILSAVVLAGLLMLTAFSWQAAVVGG IGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDW IKVGMKVLAFAGMLIGGRYLLRPVFRFIADSGVREVFTAATLLLVLGSALFMDALGLSMA LGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHILWVAASVIV LVVVKMLVLYVLARLNGMRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLV TVTLSMMTTPLVMKMIDKWLSRQFNGPDEEDEKPWVEDDKPQVIVVGFGRFGQVIGRLLM ANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAQSIVITCNEPEDTMK LVELCQQYFPHLHILARARGRVEAHELLQAGVTQFTRETFSSALELGRKTLVTLGMHPHQ AQRAQLHFRRLDMRMLRELIPMHTDTVQISRAREARRELEEIFQREMQQERRQLDGWDEF E >gi|283548475|gb|GG730302.1| GENE 61 36405 - 36956 509 183 aa, chain - ## HITS:1 COG:ECs4202 KEGG:ns NR:ns ## COG: ECs4202 COG2249 # Protein_GI_number: 15833456 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1 183 2 184 184 350 93.0 1e-96 MSQPAKVLLLYAHPESQDSVANRVLLKPAMQLSNVTVHDLYAHYPDFFIDIPHEQALLRE HEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRY DALNRYPMSDVLRPFELTAGMCRMHWMSPIIVYWARRQTKQELDSHAKAYGDWLANPIPV GGR >gi|283548475|gb|GG730302.1| GENE 62 37089 - 38990 2326 633 aa, chain + ## HITS:1 COG:ECs4203 KEGG:ns NR:ns ## COG: ECs4203 COG0488 # Protein_GI_number: 15833457 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Escherichia coli O157:H7 # 1 631 1 631 637 1157 94.0 0 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNELSADAGGFTY PGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLNDANERNDGHAIATVHGKLDAI DAWTIRSRAASLLHGLGFTNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL DLDAVIWLERWLKSYQGTLILISHDRDFLDPVVDKIIHIEQQTMFEYTGNYSAFEIQRAT RLAQQQALYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHF SFREPESLPNPLLKMEKVSAGYGDRVILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG ELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPIQHLARMAPQELEQKLRDYLGGFGFQ GDKVSEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL VVVSHDRHLIRSTTDDLYLVHDKKVEPFDGDLEDYQQWLSDVQKQENQSDEPVKESVNSA QARKDQKRREAELRTLTQPLRKEITRLEKEMEKLHAQLAQAEEKLGDSELYDQSRKAELT ACLQQQASAKSGLEECEMAWLDAQEQLEQMLGG >gi|283548475|gb|GG730302.1| GENE 63 39059 - 40549 1688 496 aa, chain - ## HITS:1 COG:PM0999 KEGG:ns NR:ns ## COG: PM0999 COG1488 # Protein_GI_number: 15602864 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Pasteurella multocida # 3 491 7 459 462 270 34.0 6e-72 MKMNPILAIDGYKVSHRVQYPQGTSRVYSNFTPRSDRFFSSPLPDGKLVFFGLQGFLQWF LVDLFNEAFFARAEDEVVSEYKQVMDSYLGKDAVAVDHIRALHQLGYLPLHIKALDEGSK VPMAVPVLTIINTQPEFFWLVNYLETVLSAELWKASTNATIAHHYRKICERWAEKTCSDM THLDFQCHDFSFRGMSGLQDTMQAGSGHLLSFKGTDSIPSLLYARDYYTDGDAYFIGASI PATEHSVMCMGEREHEIETFRRLIADIYPQGFVSIVSDTWDYWQVLTEYTRELKSIILAR EGRVVFRPDSGNPVEILCGTGADEDTRADRTAQEKGSVEVLWEIFGGTVNAKGYKVLDPH VGLIYGDSITLERANEILRRLEAKGFASSNVVFGVGSFTYQYNTRDTFGFAMKATWGEVD GEGRTIFKEPKTDNGLKRSARGLLRVTRDEQGELRLHDEQSWAQEQEGELKTRFLNGKLF NREHFEQIRQRLAAQR >gi|283548475|gb|GG730302.1| GENE 64 40564 - 41424 814 286 aa, chain - ## HITS:1 COG:Cgl0918 KEGG:ns NR:ns ## COG: Cgl0918 COG0462 # Protein_GI_number: 19552168 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Corynebacterium glutamicum # 77 280 97 300 325 95 30.0 1e-19 MSVKLTLTLDDQSYAVVDGIFPDGAVWLKVTEALPPFARLMRIRAAAMRDMNDFMLLAQL VEAVRHQTDVLVSHLELPWLPWARQDRHMVAGDSFALKVFASQLNTLRFDKVKVLDPHSD AAAAAIDNFVAISQETCLLHSATLQRQFQQKALMLVAPDAGSLKKIDAVARATGAAQYAI LSKKRDVASGKLTGFALVTGDVRGKDLLIVDDLCDAGGTFIGSAQVLRDAGARSVSLYVT HGIFSKGVEHLFANGIDAIYTTTSFAAPTLEHPQLELIDIDAIYRA >gi|283548475|gb|GG730302.1| GENE 65 41616 - 42335 518 239 aa, chain + ## HITS:1 COG:alr2484 KEGG:ns NR:ns ## COG: alr2484 COG1051 # Protein_GI_number: 17229976 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Nostoc sp. PCC 7120 # 21 222 23 231 248 108 35.0 6e-24 MTTEADYLNQYDARRFPSPLVTVDSVLFTLHQQALCVLLVERANQPQKGRWGLPGGFIDI EHDDSTRATALRKLTEKTGVLPSWLEQLDTFSGPDRDPRGWSLTVTWFALIAWVDCEPHI ASVSNARWVPVDKLAEYSLAFDHEKIIAAALHRLRQKTMYSLLPVYCLPETFTHGQLLEA TEVILGQSIQRKSLIRRFEASGMFEDTGESVATGTRKARLWRRKPDVDIHLFSRNLLTD >gi|283548475|gb|GG730302.1| GENE 66 42480 - 43439 1047 319 aa, chain + ## HITS:1 COG:STM3462 KEGG:ns NR:ns ## COG: STM3462 COG0429 # Protein_GI_number: 16766750 # Func_class: R General function prediction only # Function: Predicted hydrolase of the alpha/beta-hydrolase fold # Organism: Salmonella typhimurium LT2 # 1 319 37 355 355 631 93.0 0 MRGISNRHLQTMLPRLIRRKVKFDAYWQRLELPDGDFVDLAWSEDPQQAKHKPRLVVFHG LEGSLNSPYAHGLIEAAQKRGWLGVVMHFRGCSGEPNRLNRIYHSGETEDGTWFLHWLER EFGRVPTAAVGYSLGGNMLACLLAKEGNDIPIDAAVIVSAPFVLEACSYHMDKGFSRVYQ RYLLNLLKANASRKLQAYPGSLPVSLAQLKSLRRIRDFDDLITAKIHGFADAIDYYRQCS AMPLLNQIAKPTLIIHAKDDPFMDHHVIPEPENLPAQVEYQLTEHGGHVGFIGGTVRRPE MWLESRIPDWLTTYLEVSS >gi|283548475|gb|GG730302.1| GENE 67 43436 - 43654 270 72 aa, chain + ## HITS:1 COG:ECs4205 KEGG:ns NR:ns ## COG: ECs4205 COG3089 # Protein_GI_number: 15833459 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 72 1 72 72 115 84.0 2e-26 MIIPWQEISPDALDNLIESFVLREGTDYGEHERSLEQKVADVKRQLQSGEAVLVWSELHE TVNIMPRKQLHE >gi|283548475|gb|GG730302.1| GENE 68 43707 - 44576 817 289 aa, chain + ## HITS:1 COG:STM3464 KEGG:ns NR:ns ## COG: STM3464 COG3954 # Protein_GI_number: 16766752 # Func_class: C Energy production and conversion # Function: Phosphoribulokinase # Organism: Salmonella typhimurium LT2 # 1 289 1 289 289 578 96.0 1e-165 MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLRAAEVEGDSFHRYTRPEMDMAIRKAR DAGRHISYFGPEANDFGLLEQTFIEYGHTGKGQSRKYLHTYDEAVPWNQVPGTFTPWQPL PEPTDILFYEGLHGGVVTPQQNVARHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVM DSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFAARSIPSLDESFVVIHFRNLEGI DFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIMLPLVQRLMEGKKIE >gi|283548475|gb|GG730302.1| GENE 69 44675 - 45079 465 134 aa, chain - ## HITS:1 COG:STM3465 KEGG:ns NR:ns ## COG: STM3465 COG1765 # Protein_GI_number: 16766753 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Salmonella typhimurium LT2 # 1 134 1 134 134 251 94.0 3e-67 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR QDVTNCEVKLTSERREEAPRLFTHINLHFIVTGNDLKEASVSRAVDLSAEKYCSVALMLE KAVNITHSYEVVAA >gi|283548475|gb|GG730302.1| GENE 70 45388 - 46020 744 210 aa, chain + ## HITS:1 COG:STM3466 KEGG:ns NR:ns ## COG: STM3466 COG0664 # Protein_GI_number: 16766754 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Salmonella typhimurium LT2 # 1 210 1 210 210 418 100.0 1e-117 MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSSQ MARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCS RETVGRILKMLEDQNLISAHGKTIVVYGTR >gi|283548475|gb|GG730302.1| GENE 71 46072 - 48159 1984 695 aa, chain + ## HITS:1 COG:STM3467 KEGG:ns NR:ns ## COG: STM3467 COG1289 # Protein_GI_number: 16766755 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 694 1 694 695 1291 92.0 0 MWRRLIYHPEINYALRQTLVLCLPVAVGLIIGQLHLGLLFSLVPACCNIAGLDTPHKRFF KRLAIGASLFAGCSLIMQLLLAKDIPLPLILTGLTLILGVTAELSPLHARLLPASLIAAI FTLSLAGNMPVWEPLLIYALGTLWYGLFNWFWFWMWREQPLRESLSLLYRELADYCEAKY SLLTQHADPEKALPPLLVRQQKAVDLITQCYQQMHMLSAHHNNEYKRLLRAFQEALDLQE HISVSLHQPEEVQKLVERSHAEQVIRWNARTVAARLRVLADDILYHRLPTRFSMEKQIGT LEKIANQHPDNPVGQFCYWHFSRIARVLRTQRPLYARDLMADKQRRLPLLPALKSYLSLK SPALRNAGRISVMLSIASLMGSALHLPKPYWILMTILFVTQNGYGATRVRILHRSVGTLV GLVIAGVTLHFHIQEGFTLAGMLLITLGSYLIIRKNYGWATVGFTVTAVYTLQLLTLNGE QFIVPRFVDTVIGCLIAFGGTLWLWPQWQSGLLRKNAHDALEADQEAIRLILSNDPQATP LAYQRMRVNQAHNTLFNSLNQAMQEPGFNSHYLADMKLWVTHSQFIVEHINAMTTLAREH TMLTPDLAQRYLESCEIAIQRCQQRLEYDGPGSSGDVNILEAPEMLSHGPLSTLEQHLQR VLGHLNTMHTISSVAWRQRPHHGIWLSRRLRDMKS >gi|283548475|gb|GG730302.1| GENE 72 48241 - 49458 1385 405 aa, chain - ## HITS:1 COG:argD KEGG:ns NR:ns ## COG: argD COG4992 # Protein_GI_number: 16131238 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1 405 1 405 406 776 94.0 0 MATEQTAITRATFDEVILPIYAPAEFIPVKGKGSRVWDQQGKEYVDFAGGIAVTALGHCH PALVEALKTQGETLWHTSNVFTNEPALRLGRKIIDATFAERVLFMNSGTEANETAFKLAR HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVK AVMDDHTCAVVVEPIQGEGGVTAATPEFLHGLRELCDQHQALLVFDEVQCGMGRTGDLFA YMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVADAAFD IINTPEVLEGIQGKRQMFVQHLQKMNQQFDVFSDIRGMGLLIGAELKPQFKGRARDFLYA AAHAGVMVLNAGPDVMRFAPSLVVEQADIDEGMQRFAQAVAKVVG >gi|283548475|gb|GG730302.1| GENE 73 49544 - 50107 567 187 aa, chain - ## HITS:1 COG:ECs4211 KEGG:ns NR:ns ## COG: ECs4211 COG0512 # Protein_GI_number: 15833465 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Escherichia coli O157:H7 # 1 187 1 187 187 361 86.0 1e-100 MILLIDNYDSFTWNLYQYFCELGADVLVRRNDELTLSQIDALNPQKIVISPGPCTPDDAG ISLDVIRHYAGKIPLLGVCLGHQAMAQTFGATVVRAAKVMHGKTSPVTHNGQGVFQGLSN PLTVTRYHSLVVAPETLPDCFEVTSWSETREIMGIRHREWDLEGVQFHPESILSEQGHQL LDNFLKR >gi|283548475|gb|GG730302.1| GENE 74 50139 - 50741 616 200 aa, chain - ## HITS:1 COG:STM3470 KEGG:ns NR:ns ## COG: STM3470 COG2184 # Protein_GI_number: 16766758 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Salmonella typhimurium LT2 # 1 200 1 200 200 361 87.0 1e-100 MSDKFGDGRDPYLYPGLNVMRNRLGIHQAQRLMQAAYELTALRAATIALGPLKRGLPHLC AIHRQLYQDIFDWAGQLREVDIYQGDTRFCHFAYIEKEGNALMQDLEDESWLVELPEEKF VDRLAHYYCEINVLHPFRIGSGLAQRIFFEQLAIHAGYVLSWDDIQVEEWNQANQSGAMG DLTALRAIFRKVVSEAPETE >gi|283548475|gb|GG730302.1| GENE 75 50731 - 50931 87 66 aa, chain - ## HITS:1 COG:no KEGG:SARI_04144 NR:ns ## KEGG: SARI_04144 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 6 66 30 90 90 82 77.0 8e-15 MASAAYIQGGHVKKLTDKQKSRLWEQRRNANFQGSRRLEGVDIPRVTLSAEDAMARLEEL RRHYER >gi|283548475|gb|GG730302.1| GENE 76 51006 - 51578 601 190 aa, chain - ## HITS:1 COG:ECs4214 KEGG:ns NR:ns ## COG: ECs4214 COG0652 # Protein_GI_number: 15833468 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Escherichia coli O157:H7 # 1 190 1 190 190 345 94.0 3e-95 MLKSTLAAVAAVLALSALSPAALAAKGDPHVLLTTSAGNIELELNSQKAPVSVQNFVDYV NSGFYNNTTFHRVIPGFMVQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADK DSATSQFFINIADNAFLDHGQRDFGYSVFGKVVKGMDVADKISQVQTHDVGPYQNVPSKP IVILSAKVLP >gi|283548475|gb|GG730302.1| GENE 77 51843 - 53024 1402 393 aa, chain + ## HITS:1 COG:STM3473 KEGG:ns NR:ns ## COG: STM3473 COG0477 # Protein_GI_number: 16766761 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 393 1 393 393 639 93.0 0 MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFHLPVSSMSNTFTFLNAGILISI FLNAWLMEIVPLKTQLRFGFILMVLAVAGLMLSHSLALFSAAMFVLGLVSGITMSIGTFL VTQMYEGRQRGSRLLFTDSFFSMAGMIFPMVAAFLLARSIEWYWVYACIGLVYVAIFLLT FGCEFPALGKHAQQSDAPVVKEKWGIGVLFLSIAALCYILGQLGFISWVPEYAKSLGMSL SDAGKLVSDFWMSYMVGMWAFSFILRFFDLQRILTVLAGLATVLMYLFITGTPEHMPWFI LTLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTGPIVAHSGPMAA LQTANGLYAVVFVMCFILGFVTRHRQHSAPATH >gi|283548475|gb|GG730302.1| GENE 78 53200 - 53472 192 90 aa, chain - ## HITS:1 COG:no KEGG:SPAB_04323 NR:ns ## KEGG: SPAB_04323 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 90 1 90 90 129 77.0 3e-29 MYAVVRFAGFFTEDGNIKIGSVGFIKKILNKAMADHTITDNSESDFAHFCLDFFSITAYL NDSATPLIDANQIHLYILLKRYIADLTAFL >gi|283548475|gb|GG730302.1| GENE 79 53329 - 55872 3037 847 aa, chain + ## HITS:1 COG:STM3474 KEGG:ns NR:ns ## COG: STM3474 COG1251 # Protein_GI_number: 16766762 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Salmonella typhimurium LT2 # 1 847 1 847 847 1694 97.0 0 MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRKAYDRVHLSSYFSHHTAEE LSLVREGFYEKHGVKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKG SETQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML MAEQLDHMGGEQLRRKIESMGVRVHTSKNTKEIVQEGTEARKTMRFADGSELEVDFIVFS TGIRPRDKLATQCGLDVAPRGGIVINDACQTSDPDIYAIGECASWNNRVYGLVAPGYKMA QVAVDHILETENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEVYKRLI VSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKLPD SAQICSCFDVTKGMLVAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIE VNNNLCEHFPYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYI LKPQHTPLQDTNDNFLANIQKDGTYSVIPRSAGGEITPEGLVAVGRIAREFNLYTKITGS QRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGFGVE LENRYKGIRTPHKMKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLL AADIDRETLLKYLDRFMMFYIRTADKLTRTAPWLDNLEGGIEYLKSVIIDDKLGLNQHLE EEMARLREAVVCEWTETVNTPSAQVRFKHFINSDKRDPNVQVVPEREQHRPATPYERIPV TLVEENA >gi|283548475|gb|GG730302.1| GENE 80 55869 - 56195 428 108 aa, chain + ## HITS:1 COG:ECs4217 KEGG:ns NR:ns ## COG: ECs4217 COG2146 # Protein_GI_number: 15833471 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Escherichia coli O157:H7 # 1 108 1 108 108 216 95.0 7e-57 MSQWKNICKIDDILPATGVCALLGAEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIA EHQGELWVTSPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGTVQLRG >gi|283548475|gb|GG730302.1| GENE 81 56379 - 57188 958 269 aa, chain + ## HITS:1 COG:STM3476 KEGG:ns NR:ns ## COG: STM3476 COG2116 # Protein_GI_number: 16766764 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 473 98.0 1e-133 MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLV MGATFGIALTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVA LLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIRTEGAAKF LAIWWCLLAFIASGYEHSVANMTLFALSWFGHHSEAYTLSGIGHNLLWVTLGNTLSGVVF MGLGYWYATPKSERPAPAKINQPEAAANN >gi|283548475|gb|GG730302.1| GENE 82 57200 - 58573 1345 457 aa, chain + ## HITS:1 COG:STM3477_2 KEGG:ns NR:ns ## COG: STM3477_2 COG0007 # Protein_GI_number: 16766765 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Salmonella typhimurium LT2 # 211 457 1 247 247 486 97.0 1e-137 MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALAFIPQFTVWANEGMLTL VEGSFDESLLDPCWLVIAATDDDAVNQSVSSAAESRRIFCNVVDAPKAASFIMPSIIDRS PLMVAVSSGGTSPVLARLLRERLESMLPQHLGQVAQYAGKLRSRVKQQFASMGERRRFWE KLFINDRLAQSLANNDRKAVEETTEQLLSEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQ QADVVVYDRLVSDEIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQQGKRVVRLK GGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHL KTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIEFGMQADMPVALVENGTSVKQRVVN GVLAQLGELAQQVESPALIIVGRVVGLRDKLNWFSNH >gi|283548475|gb|GG730302.1| GENE 83 58845 - 59015 155 56 aa, chain + ## HITS:1 COG:no KEGG:SC3412 NR:ns ## KEGG: SC3412 # Name: yhfL # Def: putative outer membrane lipoprotein # Organism: S.enterica_Choleraesuis # Pathway: not_defined # 1 56 27 82 82 105 91.0 5e-22 MLKFAKITIVAGVLATLTACTGHIENKKNNCSYDYFLHPAISISKIIGGCGPAADQ >gi|283548475|gb|GG730302.1| GENE 84 59083 - 60087 1232 334 aa, chain - ## HITS:1 COG:STM3481 KEGG:ns NR:ns ## COG: STM3481 COG0180 # Protein_GI_number: 16766769 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Salmonella typhimurium LT2 # 1 334 1 334 334 662 96.0 0 MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKAT LDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYAEN INAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNALYGDIFKVPEPFIP KSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAMTDSEEPPVVRYDVKEK AGVSNLLDILSAVTGRSIPELEQHFEGKMYGHLKGEVAEAVSGMLTELQERYHRFRNDEA FLQKVMKEGAEKASARASVTLKAVYEAIGFVARP >gi|283548475|gb|GG730302.1| GENE 85 60080 - 60838 874 252 aa, chain - ## HITS:1 COG:ECs4227 KEGG:ns NR:ns ## COG: ECs4227 COG0546 # Protein_GI_number: 15833481 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 456 91.0 1e-128 MDKFQDIRGVAFDLDGTLVDSAPGLTAAVDMALYALELPVAGEERVITWIGNGADVLMER ALAWSRQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYYGDVAEEGTFLFPGVADTL GALHAKGLPLGLVTNKPTPFVAPLLDALDIAKYFSVVIGGDDVQNKKPHPDPLLLVASKL GIRPEQLLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGESIALSEPDVMYDRINELLPALG LPHSENQESKND >gi|283548475|gb|GG730302.1| GENE 86 60831 - 61508 783 225 aa, chain - ## HITS:1 COG:STM3483 KEGG:ns NR:ns ## COG: STM3483 COG0036 # Protein_GI_number: 16766771 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Salmonella typhimurium LT2 # 1 225 1 225 225 432 96.0 1e-121 MKQYLIAPSILSADFARLGEDTARALTAGADVVHFDVMDNHYVPNLTIGPMVLKSLRKYG ITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRTLQLIKEHGCKAGLVFNPA TPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGYDIRLEVDGGV KVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRNELAKVSHG >gi|283548475|gb|GG730302.1| GENE 87 61526 - 62362 673 278 aa, chain - ## HITS:1 COG:STM3484 KEGG:ns NR:ns ## COG: STM3484 COG0338 # Protein_GI_number: 16766772 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Salmonella typhimurium LT2 # 1 278 1 278 278 492 87.0 1e-139 MKKNRAFLKWAGGKYPLLDDIKRHLPQGECLIEPFVGAGSVFLNTDFSRYILADINSDLI SLYNIVKTRTDEYVQASRELFMPETNQAEVYYQFREEFNASQDPFRRAVLFLYLNRFGYN GLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAEFHCLSYEECMNRADTNSVVYC DPPYAPLSATANFTAYHTNSFSPKEQAHLAEMAEKLVSKQIPVLISNHDTPDTREWYRAA KHFQVKVRRSISSNGGTRKKVNELLALYKPGVATPAKK >gi|283548475|gb|GG730302.1| GENE 88 62480 - 63784 1057 434 aa, chain - ## HITS:1 COG:STM3485 KEGG:ns NR:ns ## COG: STM3485 COG3266 # Protein_GI_number: 16766773 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 434 1 425 425 356 78.0 4e-98 MDEFKPEDELKPDPSDRRTGRSRQSSERDNEPQINFDDVELDADDRRPARARKEREEERD IEEEYESDDDDVDEERVERRPRKRKKAAGKPASRQYMMMGVGVLVLLLLIIGIGSALKAP SSSSSEQTASGEKSIDLSGSNATDQASTTTPATGAEQTAGNTQQDVSLPPISSTPTQGQT PAAAEGQQRVEVQGDLNNALTQPQGQEQVNNVVVNSTLPTEPATVAPIRNGNAVRQTAKT ETAERPAATHQGRKQVVIEPKSKLQTTVKATPTEPKPVAQAKPTATAPTTTTKAPVVTAA PKATAEPKATATTAPAQTATPAPTATATTTTPVAGGTKSAGNVGALKSAPSSHYTLQLSS SSNYDNLNGWAKKENLKNYVVYQTTRNGQPWYVLVTGVYASKEDAKRAVSTLPADIQAKN PWAKPLHQVQADLK >gi|283548475|gb|GG730302.1| GENE 89 63881 - 64969 878 362 aa, chain - ## HITS:1 COG:STM3486 KEGG:ns NR:ns ## COG: STM3486 COG0337 # Protein_GI_number: 16766774 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Salmonella typhimurium LT2 # 1 362 1 362 362 677 94.0 0 MERITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLEQA GVNVDSVILPDGEQYKSLTVLDTVFTALLQKPHGRDTTLVALGGGVIGDLTGFAAASYQR GVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPARELAS GLAEVIKYGIILDGEFFSWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADEREMGLR ALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAARTSERLGQFTSADTQRIITLLQRA GLPVNGPREMSTEAYLPHMLRDKKVLAGEIRLVLPQAIGKSEVRGGVSHEVVLNAIADCQ QA >gi|283548475|gb|GG730302.1| GENE 90 65027 - 65548 445 173 aa, chain - ## HITS:1 COG:ECs4232 KEGG:ns NR:ns ## COG: ECs4232 COG0703 # Protein_GI_number: 15833486 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Escherichia coli O157:H7 # 1 173 68 240 240 312 97.0 2e-85 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDVEGEDGFR DREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKR PLLQVESPPREVLEALADERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN >gi|283548475|gb|GG730302.1| GENE 91 65954 - 67171 942 405 aa, chain - ## HITS:1 COG:hofQ KEGG:ns NR:ns ## COG: hofQ COG4796 # Protein_GI_number: 16131268 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component HofQ # Organism: Escherichia coli K12 # 1 405 8 412 412 627 85.0 1e-179 MLMVVAPSMLAGKPRSVTLVVDDVPVAQVLQALAEQEKKNLVVSPDVDGVLSLHLTDVPW KQALQTVVKSAGLVLRQEGNILHVHSVQWQSENASRQENEQARMQASLPLENRSIVLQYA DAAELAKAGEKLLSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLPVEQVELAAHI VTINEKSLRELGVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNIGRINARLLELE LSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVT PTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHK NKAAADSVPLLGDIPWLGSLFRHDGKEDERRELVVFITPRLVSTE >gi|283548475|gb|GG730302.1| GENE 92 67104 - 67517 211 137 aa, chain - ## HITS:1 COG:no KEGG:Z4746 NR:ns ## KEGG: Z4746 # Name: yrfA # Def: hypothetical protein # Organism: E.coli_O157 # Pathway: not_defined # 1 137 14 147 147 168 62.0 6e-41 MTVKRWLLASVSVLILTGMRNPFLPPEDHCQIAALSTWRYQGMVSLGERAIGIVQDGQHK WRRVERNDVLKNGWTISQITAESLILDTGKNCEPAQWQWQRQGAVNEAKDNMGSHDADGR GTQHAGGKTAKRNAGGG >gi|283548475|gb|GG730302.1| GENE 93 67507 - 67962 258 151 aa, chain - ## HITS:1 COG:no KEGG:SSPA3131 NR:ns ## KEGG: SSPA3131 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_AKU12601 # Pathway: not_defined # 1 151 1 157 157 130 52.0 2e-29 MRTLCDAWLAQSPRFRFMCACGWILGMLMIVALSLYPVARQRVMQQETLNQQRAAVQTQW RDLYLLASSSAEPEETFAPFSPLLFQTPLARLIHWQPSVKGGEMTLKPAWEAVPPMFVQL AKQGMNVSRFSLCVEGAELLLTLQLEHLNDG >gi|283548475|gb|GG730302.1| GENE 94 67946 - 68485 389 179 aa, chain - ## HITS:1 COG:STM3491 KEGG:ns NR:ns ## COG: STM3491 COG3166 # Protein_GI_number: 16766779 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Tfp pilus assembly protein PilN # Organism: Salmonella typhimurium LT2 # 1 179 1 179 179 129 54.0 2e-30 MIATINLLPWRQARRYACLRFWGVFFSASLLLSIGVTLIYCRVFSMENRAALLLVEAENK RKAALTSLKPRLQQRQQQWQQIQARNQQREQTQRWQQILQELAALLPEQAWLTKITWQQG TLELTGNALNFAALKTLETQLRQQPLFELNRAGETQQDTQGRWQFHYRLTRSDTHENAL >gi|283548475|gb|GG730302.1| GENE 95 68485 - 69264 495 259 aa, chain - ## HITS:1 COG:no KEGG:CKO_04818 NR:ns ## KEGG: CKO_04818 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 257 1 257 259 365 73.0 1e-100 MAFNIWKIGLHIQQHEALAVAVVRDATGWFLQRWWRVPLAPQVIVDGHIREPEQLVAALL PWSRELPRRHHIHLSFPANRTLQKKFPRPAMSLREPEQTAWLSGSMARELDMSPDALLFD YSEDTLSPAFNVTAAQSKEISTLLTLIQTLKVQVTAITPDASALQRFIPYLPEHQQCLVW RDDAQWLWATRSAWGRKLTGDISSIDELAATLSLTSAALALCDAGGFDPLSVVPVRQPPI PPQSHRFAIALGLAIGGTC >gi|283548475|gb|GG730302.1| GENE 96 69385 - 71937 2718 850 aa, chain + ## HITS:1 COG:STM3493 KEGG:ns NR:ns ## COG: STM3493 COG5009 # Protein_GI_number: 16766781 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Salmonella typhimurium LT2 # 1 850 9 858 858 1637 94.0 0 MKFVKYLLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQVYSADGELIAQ YGEKRRIPVTLAQMPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQGAST ITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLSKDEILELYLNKIYLGYRAYGVGAAA QVYFGKTVDQLSLSEIAVIAGLPKAPSTFNPLYSIDRATARRNVVLSRMLSENYITQAQY DQARGEAIDANYHAPEIAFSAPYLSEMVRQEMYNRYGEKAYEDGYRITTTITRKVQQAAQ QAVRNNVMDYDMRHGYRGPSNVLWKVGESSWDSKKITDTLKALPTYGPLLPAVVTSANPQ EAIAALADGTSVSLRMDGMRWARPYRSDTQQGPTPRKVTDVVQTGQQIWVRQVGDAWWLA QVPDVNSALVSINPQNGAVLALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGL TLASMLNDVPISRWDAGAGSDWQPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDY AAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPYFISKIESDQG GVIFEAKPKIACPDCDIPVIYGDTQKSNVLENTNVEDVAVSQEQQNAAVPMPQLEQANQA LVAQSGTQEYAPHVINTPLAFLIKSALNTNIFGEPGWMGTGWRAGRDLKRHDIGGKTGTT NSSKDAWFSGYGPGVVTSVWIGFDDHRRDLGHTTASGAIKDQISGYEGGAKSAQPAWDAY MKSVLEGVPEQPLTPPPGIVTVNIDRSTGQLASGGNSREEYFIEGTQPTQQAVHEVGTTI IDNGETHELF >gi|283548475|gb|GG730302.1| GENE 97 72058 - 72618 586 186 aa, chain - ## HITS:1 COG:STM3494 KEGG:ns NR:ns ## COG: STM3494 COG0494 # Protein_GI_number: 16766782 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Salmonella typhimurium LT2 # 1 186 12 197 198 340 94.0 6e-94 MSKSLQKPTILKVETVAESRLFKVESVDLEFSNGVRRVYERMRPSTREAVMIVPIVDDHL ILIREYAVGTESYELGFSKGLIDPGESVYDAANRELKEEVGFGAKDLTFLKKLSMAPSYF SSKMNIVVAEDLYPESLEGDEPEPLPQVRWPLAHLMDLLEDPDFHEARNVSALFLVREWL KGQGRL >gi|283548475|gb|GG730302.1| GENE 98 72939 - 75074 1752 711 aa, chain + ## HITS:1 COG:no KEGG:CKO_04821 NR:ns ## KEGG: CKO_04821 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 710 1 710 710 1277 89.0 0 MSTILIFLAALLACSLLAGWLLRSKSRRKNLPLSNVFSDASKRKLTPEERSAVENYLESL SQIQQVPGPTGASSAPVSLTLNAQSNSVIVLTHSITRYGITTDDPNKWRYYLDSVEVHLP PFWEQYINDENSVELIHTNTLPLVISLNGHTLQEYMQEARGYALQHTTSTQASIRGEESE QIELLNIRQETHEEYALSRPSGLREALLIAASFLLFFLCLVIPDTFVPWAVGGAVLLLAA GLWGLFAPPSKTALREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLIYPSHWQPYIAQ DLGQQTDIDIYLDRHVVRQGRFLSLHDEVKNFPLQHWLRNAVIAGGSLLVLLMLLCWIPL DMPIKFTLSWMKGAQTIEATSVKQLENAGVRVGDTLHLSGTGMCNIHTQGSWNAQPATPF MPFDCTQIIWNDARALPLPESDLVNKATALTQAVSRQLHPKPDDDSRVSASLRSAIQKSG MVLLDDFGEIVLKTADLCAAKDECVRLKNALVNLGNSKDWAALVKRANAGKLDGVNVLLR PVSAESLDNLVNTSTAPFISRETARAAQALNSPAPGGFLIISDEGSDLVDQPWPSTSLYD YPPQEQWNAFQRLAQMLMQTPFRAEGIVTNIATDANGTQHIGLHRIPDRSGLWRYLGTTL LMLSMLGCAIYNSVQAFRRYQRHRSRIAEIQSYYESCLNPTLIDDPESLIR >gi|283548475|gb|GG730302.1| GENE 99 75137 - 75805 824 222 aa, chain + ## HITS:1 COG:STM3496 KEGG:ns NR:ns ## COG: STM3496 COG1011 # Protein_GI_number: 16766784 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Salmonella typhimurium LT2 # 1 222 1 222 222 426 92.0 1e-119 MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETYGAKQGISPQEAQDYIRQQYHA VQHTLNWYCLDYWSERLDLDICAMTTAQGPRAVLREDTVPFLDALKASGKRRILLTNAHP HNLAVKLEHTGLASHLDLLLSTHTFGYPKEDQRLWHAVAEETGMSAEKTLFIDDSEPILD AAALFGIRYCLGVTNPDSGTAEKQYARHPSLNDYRRLIPSLM >gi|283548475|gb|GG730302.1| GENE 100 75816 - 76217 442 133 aa, chain + ## HITS:1 COG:ECs4242 KEGG:ns NR:ns ## COG: ECs4242 COG1188 # Protein_GI_number: 15833496 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Escherichia coli O157:H7 # 1 133 1 133 133 208 95.0 2e-54 MKEKPSAEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG NDERTVIIKAITEQRRPATEAVTLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE RRDLLRFKHGDSE >gi|283548475|gb|GG730302.1| GENE 101 76242 - 77120 1175 292 aa, chain + ## HITS:1 COG:STM3498 KEGG:ns NR:ns ## COG: STM3498 COG1281 # Protein_GI_number: 16766786 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Salmonella typhimurium LT2 # 1 292 3 294 294 559 94.0 1e-159 MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHTYPQPVKNVLAELLVATSLLTATLK FAGDITVQLQGDGPLTLAVINGNNNQQMRGVARMQGDIPEGADLKTLVGNGYLVITITPE EGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGDVDGKPAAGGMLLQVMPAQNA QADDFDHLTALTETIKTEELLTLPANEVLWRLYHEEEVTLYDPQDVEFKCTCSRERCAGA LKTLPDEEVDSILAEEGEIDMHCDYCGSHYLFNAMDIAEIRSNASPADPQVH >gi|283548475|gb|GG730302.1| GENE 102 77223 - 78941 1480 572 aa, chain - ## HITS:1 COG:no KEGG:STM3499 NR:ns ## KEGG: STM3499 # Name: yhgE # Def: inner membrane protein # Organism: S.typhimurium # Pathway: not_defined # 1 572 1 569 569 697 68.0 0 MDSVELSHTTRRGMIFIGLIQGGMCYLLMTYLVPQNGNWLFYGMPATIALSSALLFTVVS FKQRALWYWMALICVVVLAMGAWLKWHVEGSDKWALGEVLFAFGWRLILMAMLALPWIQY QLHASREQPRYPHFYSQLWLNTLTLLIVFISNGLFWLVLLLWSEMFKLVGITFFRTLFFE SDWFVYVALGLITAFAVILARTQSRLVAAVQKLLTLIATGLLPLVALLALMFMLTLPFTG LEAISQRVSAAGLMSTLTLLLLLLMAIVREPQKEALPYPGALRCLIKCSLVVAPIYMLIA GWALWVRIQQYGWTPERLYGVLVVAVLLVWSFGYLVSVLLRGRNPLEIQGKVIRGVSLLG LGLLILLMSPVLDVWRISVNSQMRLYYSGKIKPEQVSLYMLARSGKPGHAALEALQKDEA FNKDSKRRRDLNFILQGERDSIQKLTAKQLALKVLIAPGSKMPDDAFWAFVKEQSYRISS CVEQDACVLVDQDLNADGKPEQVLYAFGDGEGLVFGRLEDKWASIASAQLPEGFNKEKLL QAVTNHQLGSAPRSWRDITIDGTRLSMDYENE >gi|283548475|gb|GG730302.1| GENE 103 79320 - 80942 2059 540 aa, chain + ## HITS:1 COG:STM3500 KEGG:ns NR:ns ## COG: STM3500 COG1866 # Protein_GI_number: 16766788 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Salmonella typhimurium LT2 # 1 540 1 538 538 1072 96.0 0 MRVNTSLTPQDLKAYGINDVQDIVYNPSYDLLYQEELDPNLEGYERGVLTDLGAVAVDTG IFTGRSPKDKYIVRDDTTRDTLWWSDKGKGKNDNKPLSPETWQHLKGLVTQQLSGKRLFI VDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPSDEELVDFKPDFIVMNGAKCTNPQW KEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSVMNYLLPLKGIASMHCSANVGEK GDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEI YNAIRRDALLENVTVRGDGSIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHATKVIFL TADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLTLHPTQ YAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDDAETFRLPMFDL AIPTELPGVDTRILDPRNTYASPEQWQEKANALAKLFIENFEKYTDTPAGEALVSAGPKL >gi|283548475|gb|GG730302.1| GENE 104 81059 - 82402 1485 447 aa, chain - ## HITS:1 COG:STM3501 KEGG:ns NR:ns ## COG: STM3501 COG0642 # Protein_GI_number: 16766789 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 447 4 450 450 877 97.0 0 MRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQQFNKVLAYEVRMLMTDKLQ LEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWAQHYEFLSHQMAQQLGGPTEVR VEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPLFRYTLAIMLLAIGGAWLFIRIQN RPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSH DLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMADLNS VLGEVVAAESGYEREIETALLPGSIQVKMHPLSIKRAVANMVVNAARYGNGWIKVSSGTE THRAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRIIDNHNGMLEIG TSERGGLSIRAWLPVPFTRAQGTTKDA >gi|283548475|gb|GG730302.1| GENE 105 82408 - 83127 987 239 aa, chain - ## HITS:1 COG:ECs4247 KEGG:ns NR:ns ## COG: ECs4247 COG0745 # Protein_GI_number: 15833501 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 239 1 239 239 447 100.0 1e-126 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPG EDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL RRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPL SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA >gi|283548475|gb|GG730302.1| GENE 106 83353 - 83826 592 157 aa, chain + ## HITS:1 COG:ECs4248 KEGG:ns NR:ns ## COG: ECs4248 COG0782 # Protein_GI_number: 15833502 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Escherichia coli O157:H7 # 1 157 13 169 170 288 95.0 3e-78 MKTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDIRKFRIVGYDEIFGRKDYISI DSPMARALLKKEVGDLAVVNTPGGEASWYVNEIEYVK >gi|283548475|gb|GG730302.1| GENE 107 83926 - 86259 1629 777 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|51894064|ref|YP_076755.1| ribosomal protein S1-like protein [Symbiobacterium thermophilum IAM 14863] # 1 738 1 738 764 632 49 1e-180 MMNDSFCRIIAGEIQARAEQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL GYLRELEDRRQAILKSIGEQGKLTDDLANAINGTLSKTELEDLYLPYKPKRRTRGQIAIE AGLEPLAELLWNEPSHDPETEAAKYLNAENGVADTKAALDGARYILMERFAEDATLLAKV RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPISTVPSHRALAMFRGRNEGVLQLSLN ADPQFDEPPKESHGEQIIQDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH TGQAAKAAVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQFPQVTAQKVIVSEAGA SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPIVERILAATEQSLRDLMGNSSELRNL KASDFTDERFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN VTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLPRKRIALTMR LDEQPGETNARRSGGNNDRNQGNRPAPKAAKPRGRDAQPAGNSAMMDALAAAMGKKR >gi|283548475|gb|GG730302.1| GENE 108 83926 - 86259 191 777 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313] # 651 768 285 396 405 78 36 5e-13 MMNDSFCRIIAGEIQARAEQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL GYLRELEDRRQAILKSIGEQGKLTDDLANAINGTLSKTELEDLYLPYKPKRRTRGQIAIE AGLEPLAELLWNEPSHDPETEAAKYLNAENGVADTKAALDGARYILMERFAEDATLLAKV RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPISTVPSHRALAMFRGRNEGVLQLSLN ADPQFDEPPKESHGEQIIQDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH TGQAAKAAVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQFPQVTAQKVIVSEAGA SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPIVERILAATEQSLRDLMGNSSELRNL KASDFTDERFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN VTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLPRKRIALTMR LDEQPGETNARRSGGNNDRNQGNRPAPKAAKPRGRDAQPAGNSAMMDALAAAMGKKR >gi|283548475|gb|GG730302.1| GENE 109 86633 - 86860 313 75 aa, chain + ## HITS:1 COG:STM3505 KEGG:ns NR:ns ## COG: STM3505 COG1918 # Protein_GI_number: 16766793 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Salmonella typhimurium LT2 # 1 75 1 75 75 145 97.0 2e-35 MQFTPDSAWKITGFAREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIETRRVSLVL RKKDLALLEVEAVSC >gi|283548475|gb|GG730302.1| GENE 110 86879 - 89197 2700 772 aa, chain + ## HITS:1 COG:STM3506 KEGG:ns NR:ns ## COG: STM3506 COG0370 # Protein_GI_number: 16766794 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Salmonella typhimurium LT2 # 1 772 1 772 772 1409 92.0 0 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGHFATTDHQVTLVDLPGT YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALN MLDIAEKQQIRIDIDALSARLGCPVVPLVSTRARGIEALKLAIDRYKENDTVELVHYAQP LLQEAESLADAMAKDMPLKQRRWLGLQMLEGDIYSRAYAGDAAQNLDAAVARLSETMDDP ALHIADARYQCIAAICDTVSNTLTAEPSRFTTAVDKIVLNRFLGLPIFLFVMYLMFLLAI NIGGALQPLFDVGSVALFIHGIQWIGYTLHFPDWLTIFLAQGLGGGINTVLPLVPQIGMM YLFLSFLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRER LMTIMMAPFMSCGARLAIFAVFAAAFFGQNGALAVFSLYVLGIIMAVLTGLMLKHTIMRG EATPFVMELPVYHVPHIKSLIIQTWQRLKGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVD NINDSALASVSRVITPVFKPIGVHEDNWQATVGLFTGAMAKEVVVGTLNTLYTAENIQEE EFNPADFHLGDELLSAVDETWQSLKDTFSLSVLANPIEASKGDGEMATGAMGVMGEKFGG AAAAYSYLIFVLLYVPCISVMGAIARESSRGWMGFSILWGLNIAYSLSTLFYQTVSYKAH PTYSLVCILAVILFNIVLLGLLRRARSRVDLSLLSTNRTASSCCSSTTGDCH >gi|283548475|gb|GG730302.1| GENE 111 89209 - 89445 223 78 aa, chain + ## HITS:1 COG:no KEGG:SG3931 NR:ns ## KEGG: SG3931 # Name: yhgG # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 78 1 78 78 137 93.0 2e-31 MASLIQVRDLLALRGRMEAKQISHTLHTPQPMIDAMLNQLEQMGKAVRIQEDADGCLSGS CKSCPEGKACLREWWALR >gi|283548475|gb|GG730302.1| GENE 112 89692 - 90642 539 316 aa, chain + ## HITS:1 COG:STM3508 KEGG:ns NR:ns ## COG: STM3508 COG5464 # Protein_GI_number: 16766796 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 316 1 304 304 447 68.0 1e-125 MNTDTTATPHDAIFKTFLNHPATARDFLQLHLPDSLRALCDLNTLQLESGSFIEDDLRAY YSDVLWSLKTREGDGYIYTIIEHQSTADAHMAFRLMRYAIAVMQRHLDAGHKKLPLVIPI LFYHGTVTPYPYSLCWLDEFDDPESARPLYAAAFPLVDITIVPDDEIMQHRRMALLELIQ KHIRKRDLMGLVEKLSILLVKGHANDSQLKALFNYLIQAGDTARFSEFIHQVAERLPQHK DKLMTIAERLRQEGHFKGLQEGHKNGLQEGLREGLQQGKREEALRIATTMLADGIDPLTI CRITGLTAEDLATHSH >gi|283548475|gb|GG730302.1| GENE 113 90686 - 91456 712 256 aa, chain - ## HITS:1 COG:bioH KEGG:ns NR:ns ## COG: bioH COG0596 # Protein_GI_number: 16131288 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Escherichia coli K12 # 1 256 1 256 256 461 87.0 1e-130 MNDIWWQTQGSGNCHLVLLHGWGLNAEVWHCISEELSSHFTLHLVDLPGFGRSQGFGAMS LEEMAGRVLKQAPEKAIWLGWSLGGLVASQVALTHPERVQALVTVASSPCFSARDEWPGI KPEVLAGFQQQLSEDFQRTVERFLALQTMGTETARQDVRALKKTVLALPMPDVDVLNGGL EILKTVDLREALCEVNMPFLRLYGYLDGLVPRKVVPMLDTLWPQSESLVFAKAAHAPFIS HPAEFCAALVALKQRL >gi|283548475|gb|GG730302.1| GENE 114 91494 - 92177 356 227 aa, chain + ## HITS:1 COG:STM3510 KEGG:ns NR:ns ## COG: STM3510 COG1040 # Protein_GI_number: 16766798 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Salmonella typhimurium LT2 # 1 227 1 227 227 360 85.0 1e-99 MLTVPGLCWLCRMPLTLGHWGICSVCTRATRQHLSLCPQCGLPAAHPSLSCGRCLQKPPP WQRLIAVSDYVPPLSGLIHQFKFSRRSEMANALARLLLLEVIEARRTSGFPLPDRLISVP LWQRRHWRRGFNQSDLLCRPLAGWLGCDWNNRAITRVRATATQHHLSARLRKRNLKNAFR LELPVQGLHMVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWCLCRTL >gi|283548475|gb|GG730302.1| GENE 115 92236 - 92811 730 191 aa, chain + ## HITS:1 COG:STM3511_2 KEGG:ns NR:ns ## COG: STM3511_2 COG0694 # Protein_GI_number: 16766799 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Salmonella typhimurium LT2 # 97 191 1 95 95 191 96.0 7e-49 MIHISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTAIKFDL LTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVADDAPLMERVEYMLQSQIN PQLAGHGGRVSLMEITDEGFAILQFGGGCNGCSMVDVTLKEGIEKQLLAEFPELKGVRDL TEHQRGEHSYY >gi|283548475|gb|GG730302.1| GENE 116 93179 - 94495 1676 438 aa, chain + ## HITS:1 COG:STM3512 KEGG:ns NR:ns ## COG: STM3512 COG2610 # Protein_GI_number: 16766800 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 1 438 1 438 438 687 98.0 0 MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGS LALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVL MLPLVFTIAAAANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFHADMGKTLLFGTI LAIPTVILAGPVYARFLKGIDKPIPEGLYSAKTFTEEEMPGFGVSVWTSLVPVILMAMRA VAEMILPKGHAFLTVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIA MMLLIIGGGGAFKQVLVDSGVDKYIASMMHGSNVSPLLMAWSIAAVLRIALGSATVAAIT AGGIVAPLIATTGVSPELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLE TIISVCGLVGCLLLGMVV >gi|283548475|gb|GG730302.1| GENE 117 94650 - 96737 2315 695 aa, chain - ## HITS:1 COG:malQ KEGG:ns NR:ns ## COG: malQ COG1640 # Protein_GI_number: 16131292 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Escherichia coli K12 # 1 685 1 684 694 1278 88.0 0 MESKRLDNAALAAGISPNYINAHGKPQSIGVETKRRLLDAMHRTTAATKVAVTPVPNVMV YTAGKKMPLAVEGSGEFNWLLTTEEGAQHKGHAVGGKSFNLPAKLPEGYHTLTLTQGELR THCRIIVAPKRCYEPQALLTGQKLWGACVQLYTLRSEKNWGIGDFGDLRAMLADVAQRGG AFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVDDFRLSKEAQRWWQKPATQQ ALQKARDAEWVDYTAVTTLKMTALRMAWKSFSVRDDEQMAAFRQFVAQEGDSLYWQAAFD ALHAHQVKEDALRWGWPVWPEAFQSVDSPEVKQFCVEHCDEVDFYLWLQWLAYTQFADCW ETSQGFAMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMD PHVITARAYEPFIELLRANMQNCGALRIDHVMSMLRLWWIPYGETADHGAYVHYPVDDLL SILALESKRHHCMVIGEDLGTVPVEIVSKLRDSGVYSYKVLYFENDHEKNFRAPKAYPEQ SMAVAATHDLPTLKGYWDSGDLTLGKALGLYPDEVVLRGLYQDRELAKQGLLDALHKYGC LPKRAGHKASLMSMTPILNRGMQRYIADSNSALLGLQPEDWLGMADPVNIPGTSDQYKNW RRKLIATLEQMFADDGVNKLIKDLDKRRKAAAKKK >gi|283548475|gb|GG730302.1| GENE 118 96747 - 99140 2600 797 aa, chain - ## HITS:1 COG:STM3514 KEGG:ns NR:ns ## COG: STM3514 COG0058 # Protein_GI_number: 16766802 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Salmonella typhimurium LT2 # 1 797 1 797 797 1565 93.0 0 MSQPTFNKDQFQAALTRQWQRFGLLSAHEMTSRQWWQAVSGALAELLSAQPAAKPAKNQR HVNYISMEFLIGRLTGNNLLNLGWYQAVSDALKAHDVNLTDLLEEEIDPALGNGGLGRLA ACFLDSMATVGQSATGYGLNYQYGLFRQSFADGQQMEAPDDWHRGSYPWFRHNEALDVQV GIGGKVSKEGHWEPGFTITGQAWDLPVLGYRNGVAQPLRLWQASHAHPFNLTKFNDGDFL RAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSIADILRRHHLAGRKLHELAD FEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALECWDEKL VKALLPRHMQIIKEINDRFKKLVDKTWPGDAEVWAKLAVVHNKQVRMANMCVVSGFAVNG VAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLKKEWAND LDQLINLEKYADDAKFRQQYRDIKLANKQRLAEFVKVRTGIEINPQAIFDIQIKRLHEYK RQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAETINNDP KIGDKLKVVFLPDYCVSAAEMLIPAADVSEQISTAGKEASGTGNMKLALNGALTVGTLDG ANVEIAEKVGDENIFIFGHTVEEVKALKAKGYDPVKWRKKDKVLDAVLKELESGKFSDGD KHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFS SDRSIRDYQARIWQAKR >gi|283548475|gb|GG730302.1| GENE 119 99773 - 102478 2618 901 aa, chain + ## HITS:1 COG:STM3515 KEGG:ns NR:ns ## COG: STM3515 COG2909 # Protein_GI_number: 16766803 # Func_class: K Transcription # Function: ATP-dependent transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 901 1 901 901 1575 94.0 0 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLVSQWAAGKNELG WYSLDEGDNQQERFASYLIAAIQQATGGHCTTSEALVQKRQYASLTSLFAQLFIELAEWH RPLYLVVDDYHLISNPAIHEAMRFFLRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG SQQLAFNHQEAKQFFDRRLSSPIEAAESSRMCDDVAGWATALQLIALSARQNNNSAHQSA RRLAGINASHLSDYLVDEVLDSVDLGTRHFLLKSAILRSMNDALIVRVTGEENGQMRLEE IERQGLFLQRMDDVGEWFSYHPLFGSFLRQRCQWELASELPEIHRAAAESWMAQGFPSEA IHHALAAGDAHMLRDILLNHAWGLFNHSELALLEESLKALPWESLLENPRLVLLQAWLMQ SQHRYSEVNTLLARAEQEMKGDMEPTLYAEFNALRAQVAINDGNPDEAEHLAKLALDELP IAWFYSRIVATSVHGEVLHCKGDLTRSLALMQQTEQMARHHDVWHYALWSLIQQSEILFA QGFLQAAWETQEKAFQLIKEQHLEQLPMHEFLVRIRAQLLWAWARLDESEASARTGIELL STFQPQQQLQCLALLIQCSLARGDLDNARSLLNRLENLLGNGRYHSDWISNADKVRVIYW QMVGDKNSAANWLRHTPKPEFANNHFLQSQWRNIARAQILLGEFEPAEIVLEELNENARN LRLMSDLNRNLLLLNQLYWQAGRKNDAQRVLLEALQLANRTGFISHFVIEGEAMAQQLRQ LIQLNTLPELDQHRAQRILREINQHHRHKFAHFDEGFVERLLTHPDVPELIRTSPLTQRE WQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQKLLKMMGYG V >gi|283548475|gb|GG730302.1| GENE 120 102520 - 103278 881 252 aa, chain - ## HITS:1 COG:STM3523 KEGG:ns NR:ns ## COG: STM3523 COG1349 # Protein_GI_number: 16766810 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Salmonella typhimurium LT2 # 1 252 1 252 252 471 94.0 1e-133 MKQTQRHDAIIELVKKQGYVSTEELVEHFSVSPQTIRRDLNDLADKNMILRHHGGAALPS SSVNTPWHDRKATQTAEKERIARKVATQIPNGSTLFIDIGTTPEAVAHALLNHSNLRIVT NNLNVANTLMAKEDFRIILAGGELRSRDGGIMGEATLDFISQFRLDFGILGISGIDSDGS LLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDTLPPAGVMQ VIADHHIQLELC >gi|283548475|gb|GG730302.1| GENE 121 103324 - 104157 742 277 aa, chain - ## HITS:1 COG:ECs4267 KEGG:ns NR:ns ## COG: ECs4267 COG0705 # Protein_GI_number: 15833521 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Escherichia coli O157:H7 # 1 275 1 275 276 483 90.0 1e-136 MLMITSFANPRVAQAFVDYMATQGVILTIQQHQQTDVWLADESQAERVRAELARFLDNPG DPRYLAASWQSGHTDSGLRYQRYPFLATLRERAGPVTWVVMAACILVFIAMNVVGDQAVM LWLAWPFDPSLKFEFWRYFTHAFMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITVI SALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIFLQRGLIIFALIWIVAG WFDLFGMSMANGAHIAGLAVGLAMAFADTMNVRKRTL >gi|283548475|gb|GG730302.1| GENE 122 104233 - 104559 448 108 aa, chain - ## HITS:1 COG:STM3525 KEGG:ns NR:ns ## COG: STM3525 COG0607 # Protein_GI_number: 16766812 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Salmonella typhimurium LT2 # 1 108 1 108 108 185 86.0 2e-47 MDQFECINVEEAHQKLLHGMAVLVDIRDPQSYAMGHAPQAFHLTNDTLGTFMRDHDFDTA VMVMCYHGNSSKGAAQYLLQQGYDAVYSVDGGFDAWHRHFPAEVAYGS >gi|283548475|gb|GG730302.1| GENE 123 104762 - 106270 1878 502 aa, chain + ## HITS:1 COG:STM3526 KEGG:ns NR:ns ## COG: STM3526 COG0578 # Protein_GI_number: 16766813 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 502 1 502 502 925 93.0 0 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYE FRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGS TGLRFGADSVMKPEIVRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENG LWIVEAEDIDTGKKHTWQARGLVNATGPWVKEFFDDGMHLPSPYGIRLIKGSHIVVPRVH TQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIDESEINYLLKVYNAHF KKQLGRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRK LAEHAMEKLSSYYQGIGPAWTKECILPGGDIGGDREDYAAKLRRRYPFLTETLARHYSRT YGSNTEWIIGDATSIAELGEDFGHEFYEAELKYLVEHEWVRRAEDALWRRTKEGMWLNAE QQSRMTQWLTEYIEKHQLSLAS >gi|283548475|gb|GG730302.1| GENE 124 106493 - 108940 2897 815 aa, chain - ## HITS:1 COG:STM3534 KEGG:ns NR:ns ## COG: STM3534 COG0058 # Protein_GI_number: 16766820 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Salmonella typhimurium LT2 # 1 815 1 815 815 1602 96.0 0 MNAPFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRS NRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVKNALEGMGLDLEDLIDEENDPG LGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVDGRQKESPDYWLEYGNPWE FKRHNTRYKVRFGGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWNAQASS EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTVQDILSR HYQLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHT LMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTGLLGRTSIIDESNGRR VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPTRFCNVTNGVTPRRWLALANPS LSDVLDENIGRTWRTDLSQLSELEQHCDYPLVNQAVRRAKLENKKRLATLIAQQLNVVVN PKSLFDVQIKRIHEYKRQLMNVLHVITRYNRIKDDPDAEWVPRVNIFAGKAASAYYMAKH IIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQVIIPAADLSEQISLAGTEASGTSN MKFALNGALTIGTLDGANVEMLEHVGAENIFIFGNTAEEVEALRSQGYKPREYYEKDEEL HQVLTQIGSGVFSPEEPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYRHPEEW TTKSMINIANMGYFSSDRTIKEYAENIWHIDSVRL >gi|283548475|gb|GG730302.1| GENE 125 108960 - 110393 1381 477 aa, chain - ## HITS:1 COG:STM3535 KEGG:ns NR:ns ## COG: STM3535 COG0297 # Protein_GI_number: 16766821 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Salmonella typhimurium LT2 # 1 477 1 477 477 952 95.0 0 MQVLHVCSEMFPLLKTGGLADVLGALPAAQIADGVDARVLLPAFPDIRRGIPDAQVVTRR DTFAGRITLLFGHYNGVGIYLVDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWAGCEM ACGLDPFWRPDVVHAHDWHAGLAPAYLAARGHPAKSVFTVHNLAYQGMFYAKHMDDIQLP WSFFNVHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGR LSGVLNGVDEKIWSPETDLLLASRYTRDTLEEKAENKRQLQIAMGLKVNDKVPLFAVVSR LTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFS HRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGIASG FVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMTMDFSWQVAAKSYRELYYRLK >gi|283548475|gb|GG730302.1| GENE 126 110393 - 111688 1283 431 aa, chain - ## HITS:1 COG:STM3536 KEGG:ns NR:ns ## COG: STM3536 COG0448 # Protein_GI_number: 16766822 # Func_class: G Carbohydrate transport and metabolism # Function: ADP-glucose pyrophosphorylase # Organism: Salmonella typhimurium LT2 # 1 431 1 431 431 868 94.0 0 MVSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSN CINSGIRRIGVITQYQSHTLVQHIQRGWSFFSEEMNEFVDLLPAQQRMQGENWYRGTADA VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGV MDVDDSDKIIEFVEKPANPPAMPGDPTKSLASMGIYVFNADYLYELLAEDDLDENSSHDF GKDIIPKITEAGMAYAHPFPLSCVQSDPESEPYWRDVGTLEAYWKANLDLASVTPELDMY DQDWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRVNSFC NIDSAVLLPEVWVGRSCRLRRCIIDRACVIPEGMVIGENAEEDARRFYRSEEGIVLVTRE MLRKLQIKQER >gi|283548475|gb|GG730302.1| GENE 127 111703 - 113679 1603 658 aa, chain - ## HITS:1 COG:STM3537 KEGG:ns NR:ns ## COG: STM3537 COG1523 # Protein_GI_number: 16766823 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Salmonella typhimurium LT2 # 1 658 1 658 658 1246 89.0 0 MTHLATGNATPHGATYDGHGVNFTLFSAHAERVELCVFDEQGCELRYDLPGRSGDVWHGY LANARPGLRYGYRVHGPWQPEHGHRFNPAKLLLDPCARRVDGELKDNPLLHGGLNEPDHR DNAAIALKSVVVSDHYDWEDDAAPRTPWANTVIYEAHVKGLTYLHPGLPEELRGTYKALG HPVMIDYFKRLGITALELLPVAHFASEPRLQRLGLSNYWGYNPVAMFALHPAYACSPESA LDEFRDAVKALHKAGIEVILDIVLNHSAELDLEGPVFSLRGIDNRSYYWIRDDGDYYNWT GCGNTLNLSHPGVVEYACECLRYWVETCHVDGFRFDLASVMGRTPAFRQDAPLFTAIQNC PLLSRVKLIAEPWDIGEGGYQVGNFPPPFAEWNDHFRDATRRFWLQRNLSLGEFAGRFAA SSDVFKRNGRKPSATVNLVTAHDGFTLRDCVCFTNKHNEANGEENRDGTSNNYSDNHGKE GLGGTLDLIERRRDSIHALLATLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDW QQANSGLTTFTAALIHLRRQIPALTGDCWWEEGDGNVRWLNKYAQPLSADEWQNGPRQMQ ILLSDRFLIAINATLEVTDIVLPEGEWRAIPPFAGEDNPVLTAVWQGPAHGLCVFHRG >gi|283548475|gb|GG730302.1| GENE 128 113676 - 115862 2615 728 aa, chain - ## HITS:1 COG:glgB KEGG:ns NR:ns ## COG: glgB COG0296 # Protein_GI_number: 16131306 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Escherichia coli K12 # 1 728 1 728 728 1436 94.0 0 MSVRIDRDVINALIAGHFADPFSVLGMHQTDAGLEVRALLPDATEVWVIEPKTGRKVGKL DCLDSRGFFCAVLPRRKNFFRYQLAVVWHGQQNLIDDPYRFGPLIQDMDAWLLSEGTHLR PYETLGAHADTMDGVTGTRFSVWAPNAQRVSVVGQFNYWDGRRHPMRLRKESGIWELFIP GAQHGQLYKYEMIDANGKLRIKADPYAFEAQMRPETASLICGLPEKVVQSEERKKANQFD APISIYEVHLGSWRRHTDNNFWLSYRELADQLIPYAKWMGFTHLELLPINEHPFDGSWGY QPTGMYAPTRRFGTRDDFRYFVNAAHQAGLNVILDWVPGHFPSDDFGLAEFDGTRLYEHS DPREGYHQDWNTLIYNYGRREVSNYLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG EWVPNEFGGRENLEAIEFLRNTNRILGEQVPGAVSMAEESTDFAGVSRPQDMGGLGFWYK WNLGWMHDTLDYMKLDPVYRQYHHDKLTFGMLYNYTENFVLPLSHDEVVHGKKSILDRMP GDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQ RLVRDLNHTYRHHKALHELDFDTYGFEWLVVDDKERSVLAFVRRDKVGNEIIVISNFTPV PRHGYRFGINQPGKWREILNTDSMHYHGSNTGNGGAVHSDEIASHGRQHSLSLTLPPLAT VWLVREGE >gi|283548475|gb|GG730302.1| GENE 129 116135 - 117241 1355 368 aa, chain - ## HITS:1 COG:ECs4278 KEGG:ns NR:ns ## COG: ECs4278 COG0136 # Protein_GI_number: 15833532 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Escherichia coli O157:H7 # 1 368 1 367 367 730 97.0 0 MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPTFGGTSTGTLQDAFD LDALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVI TDGLNKGIKTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLSQM GHLYGHVADELATPSSAILDIERKVTTLSRSGELPVDNFGVPLAGSLIPWIDKQLDNGQS REEWKGQAETNKILNTSAVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHN PWAKVVPNDRDITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPL RRMLRQLA >gi|283548475|gb|GG730302.1| GENE 130 117432 - 118025 614 197 aa, chain + ## HITS:1 COG:ECs4279 KEGG:ns NR:ns ## COG: ECs4279 COG2095 # Protein_GI_number: 15833533 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Escherichia coli O157:H7 # 1 197 1 197 197 290 94.0 9e-79 MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMIRELFIALLVMFIFLFAGEK ILAFLNLRAETVSISGGIILFLIAIKMIFPSATGNSTGLPAGEEPFIVPLAIPLVAGPTI LASLMLLSHQYPNQMGHLVIALLIAWGGTFVILLQSSLFLRLLGEKGVNALERLMGLILV MMATQMFLDGVRMWMKG >gi|283548475|gb|GG730302.1| GENE 131 118406 - 119707 1714 433 aa, chain - ## HITS:1 COG:STM3541 KEGG:ns NR:ns ## COG: STM3541 COG2610 # Protein_GI_number: 16766827 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 1 433 14 446 446 676 97.0 0 MLLLLFLVMKARMHAFVALMVVSIGAGLFSGMPLDKIAATMEKGMGGTLGFLAIVVALGA MFGKILHETGAVDQIAVKMLKSFGHSRAHYAIGLAGLICALPLFFEVAIVLLISVAFSMA RHTGTNLVKLVIPLFAGVAAAAAFLLPGPAPMLLASQMHADFGWMILIGLCAAIPGMIIA GPLWGNFISRYVELHVPEDITEPHLGEGKMPSFGFSLALILLPLVLVGLKTIAARFVPVG SSTYEWFEFIGHPFTAILVACLVAIYGLAVRQGMAKDRVMEICGHALQPAGIILLVIGAG GVFKQVLVDSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVI EQLNYSGAQMAALSICIAGGSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTV GAIVGMIAFQLLS >gi|283548475|gb|GG730302.1| GENE 132 119746 - 120237 554 163 aa, chain - ## HITS:1 COG:STM3542 KEGG:ns NR:ns ## COG: STM3542 COG3265 # Protein_GI_number: 16766828 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconate kinase # Organism: Salmonella typhimurium LT2 # 1 162 14 175 177 300 91.0 6e-82 MGVSGSGKSAVASEVAHQLQAAFLDGDFLHPRSNIMKMASGEPLNDDDRKPWLQALNDAA FAMQRTNKVSLIVCSALKKDYRDQLRDGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQM LVTQFEALEEPGANENDVLVVDIDQPLDGVVASTIEVINQGSK >gi|283548475|gb|GG730302.1| GENE 133 120418 - 121413 1055 331 aa, chain - ## HITS:1 COG:STM3543 KEGG:ns NR:ns ## COG: STM3543 COG1609 # Protein_GI_number: 16766829 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 331 1 331 331 640 97.0 0 MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSN ATSRAIGVLLPSLTNQVFAEVLRGIEAVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNI DGLILTERSHTPRTLKMIEVAGIPVVELMDSQTPCLDIAVGFDNFEAARQMTAAIIARGH RHVAYLGARLDERTIIKQRGYEQAMRDANLVPYSVMVEQSSSYSSGIELIRQARREYPQL DGVFCTNDDLAVGAAFECQRLGLKIPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSI GAERLLARIRGEAVTPKMLDLGFTLSPGGSI >gi|283548475|gb|GG730302.1| GENE 134 121636 - 122331 953 231 aa, chain - ## HITS:1 COG:yhhW KEGG:ns NR:ns ## COG: yhhW COG1741 # Protein_GI_number: 16131311 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1 231 1 231 231 458 95.0 1e-129 MIYLRKANDRGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIDAGQGFGTHPHK DMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSNTEKLHLYQIWIM PQENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVYQDMELYRWALIKDEQSVHQIAAE RRVWIQVVKGNVTINGTKATTSDGLAIWDEQAISIHADSDSEVLLFDLPPV >gi|283548475|gb|GG730302.1| GENE 135 122455 - 123492 1264 345 aa, chain - ## HITS:1 COG:STM3545 KEGG:ns NR:ns ## COG: STM3545 COG0673 # Protein_GI_number: 16766831 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Salmonella typhimurium LT2 # 1 345 1 345 345 673 95.0 0 MTLHCAFIGFGKSTTRYHLPYVLNRKDTWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEV LGDPQVKLVIVCTHADSHFEYARRALEAGKNVLVEKPFTPTLAQAKELFELAQSKGLTVT PYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVAETKPGLPQDGAFYGLGVHTM DQIISLFGRPDRVAYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHLVKIDYPKFIVHG TKGSFVKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDGGITVKEEVKPELGDYGR VYDALYQTLTVGTPNYVKESDVLTNLEILERAFEQAPPATITLAK >gi|283548475|gb|GG730302.1| GENE 136 123960 - 124448 344 162 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229877854|ref|ZP_04497362.1| acetyltransferase, ribosomal protein N-acetylase [Sphaerobacter thermophilus DSM 20745] # 1 162 1 163 179 137 44 9e-31 MSEIVIRHAEPKDYDAIRQIHAQPEVYHNTLQVPHPSMEMWQTRLADQPGIKQLVACIDD IVVGHLSIAVAQRPRRSHVADFGICVDARWQNRGVASALIRTMIDMCDNWLRVDRIELTV FVDNEPAVAVYKKYGFEIEGTGKKYGLRNGEYVDAYFMARVK >gi|283548475|gb|GG730302.1| GENE 137 124494 - 125378 459 294 aa, chain + ## HITS:1 COG:no KEGG:Bcen_4292 NR:ns ## KEGG: Bcen_4292 # Name: not_defined # Def: hypothetical protein # Organism: B.cenocepacia # Pathway: not_defined # 18 294 24 315 316 156 33.0 9e-37 MKKYLPLVLLTALSPAFATTVQNLDSIPSAIQYPEGKQIFAEQMAGATPAKGFGELPQGL SVSQWIAWVAPNEDPDNLILTGAKAWGKDGKYIGVACFADNQADAAQAKKYADNSCPENY SNGRANKLYLGIFSWQNQRLTPIARSEKTLNQLSEWNKAAEKESDDESVRPLAYYTKLDL APYRIAPETLAFGVRGGYSDAYSGGGAFYEVLELYAIKDSKIINVYSDLVYQYTDIAGDW NKDGTRQHDISESKGILKIRSTKTNGFYDLERVDLQDKSSQIFRWSESLQRYAP >gi|283548475|gb|GG730302.1| GENE 138 125649 - 126764 385 371 aa, chain + ## HITS:1 COG:yhhZ_1 KEGG:ns NR:ns ## COG: yhhZ_1 COG3157 # Protein_GI_number: 16131314 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli K12 # 1 169 1 169 170 259 75.0 4e-69 MSDIVYLMVSGQQQGAISDGCGTVASVGNRWQVGHENEIFSFSLSNSITSTGSGSHLHGL RFCKLIDKSTPLFVNAINNNEQLYMEFYFYRINRFGRWEKYYYIQLRGAFLSAIQHQFSE NNLDTETITISYEYIFCKHLIANTEFSYLALPANYNRLFIPRPKTPADNGLKTLNSKGIG RLLAAGGIYNGNIDGFRETAEKLGGDAIKGYYQVLNEKTTGALLAAGSILLARRSNSDYY HEITIYLGKLRGEPKLLSGVIVKEINYTRRNPTEAAALRKEFDSTIRKRFIIDLAKNPIY ANRFNSEDILRMNNGNVPHNYSVHHKLPLDDGGTNNFDNLVLTENEPYHKIFTNMQSNVT RKMLPGESKTI >gi|283548475|gb|GG730302.1| GENE 139 127109 - 127318 193 69 aa, chain + ## HITS:1 COG:no KEGG:EC55989_3852 NR:ns ## KEGG: EC55989_3852 # Name: yrhA # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 67 96 162 164 85 73.0 8e-16 MNEFYRNNDDYINPDLAERLVIGDDSISLFTYDTKTDLFEIRDNIGTDNVFGTFKSFTDF LNEILDTAR >gi|283548475|gb|GG730302.1| GENE 140 127339 - 127596 128 85 aa, chain + ## HITS:1 COG:no KEGG:CKO_04863 NR:ns ## KEGG: CKO_04863 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 85 1 85 85 136 89.0 3e-31 MKKIPLDILEQKAKEISKKTLGDYILTDEILSQLASGVIIDGDDRVFVLFIPKELAKDTV DILRIRMNIYTGDGFVEYVGLERKK >gi|283548475|gb|GG730302.1| GENE 141 127642 - 127893 125 83 aa, chain + ## HITS:1 COG:no KEGG:ECS88_4259 NR:ns ## KEGG: ECS88_4259 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_S88 # Pathway: not_defined # 2 80 3 81 85 112 70.0 7e-24 MITETELNVLKVMAEKDIDWNWIALDRALYTRNVPGFGNVANIVTNLVNNGLVEVVYGED KSRPRYKVAQNGFNFIKEQQHLF >gi|283548475|gb|GG730302.1| GENE 142 127967 - 129712 1977 581 aa, chain - ## HITS:1 COG:STM3551 KEGG:ns NR:ns ## COG: STM3551 COG0405 # Protein_GI_number: 16766837 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Salmonella typhimurium LT2 # 2 581 1 580 580 1067 95.0 0 MIKPTFLRRVAIAALLSGSCFSVAAAPAAPPPVSYGVEEDVFHPVRAQQGMVASVDALAT RVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLRTKDGNTTAIDFREMAPA GATRDMFLDDQGNADAKKSLTSHLASGTPGTVAGFSLALEKYGTMPLNKVVRPAMKLAEE GFVVNDALADDLKTYGSEVIPNHENSKAIFWKDGEPLKKGDKLVQKSLAKSLEMIAENGP DAFYKGAIADQIAGEMQKNGGLMTKEDLASYKAVERTPISGDYRGYQVFSMPPPSSGGIH IVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAY AKTLADQIDINKAKPSSQIKPGKLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIV AGNTGILLNNEMDDFSAKPGVPNVYGLVGGDANAVGPKKRPLSSMSPTIVVKDGKTWLVT GSPGGSRIITTVLQMVVNSIDFGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEQ KGQKVALKEAMGSTQSIMVGPDGALYGASDPRSVDDLTAGY >gi|283548475|gb|GG730302.1| GENE 143 129831 - 130274 432 147 aa, chain + ## HITS:1 COG:no KEGG:ECO111_4256 NR:ns ## KEGG: ECO111_4256 # Name: yhhA # Def: hypothetical protein # Organism: E.coli_O111_H- # Pathway: not_defined # 1 147 1 146 146 130 82.0 2e-29 MKRLLLLVMLLPFAGFAQPINTMNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQT QTRMQQQHMENQINTNSQRVLQSQPGELNTGQQQMLPNSNGGMLNGTRNPDSSLNKQQHM LSEKKNGDMLKPSSTPQPNVPLKTIGP >gi|283548475|gb|GG730302.1| GENE 144 130271 - 131014 793 247 aa, chain - ## HITS:1 COG:ugpQ KEGG:ns NR:ns ## COG: ugpQ COG0584 # Protein_GI_number: 16131321 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Escherichia coli K12 # 1 244 1 244 247 460 90.0 1e-130 MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLER TSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAARCRQHGMMANIEIKPTTG TGTLTGKAVALAARELWAGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELT TRLGCVSIHLNHKLLDEVRVDALRDAGLRILVYTVNRPQRAAELLRWGVDCICTDAIDTI GPDFQPY >gi|283548475|gb|GG730302.1| GENE 145 131011 - 132081 1173 356 aa, chain - ## HITS:1 COG:ECs4296 KEGG:ns NR:ns ## COG: ECs4296 COG3839 # Protein_GI_number: 15833550 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Escherichia coli O157:H7 # 1 356 14 369 369 632 89.0 0 MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVSGGD IWIDNKRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKEHIAERVKEAAR ILELGELLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQHL HRRLKTTSLYVTHDQVEAMTLAQRVMVMNKGIAEQIGTPVEVYEKPASRFVASFIGSPAM NLLDGHISASGCHFELDGGMTLPIAKSVRECIGRNMTLGIRPEHIALSSQADGGVPLVVD TLEMLGADNLAHGRWGEQKLVVRLAHQHRPTAGSTLWLHLPENHLHLFDGETGQRV >gi|283548475|gb|GG730302.1| GENE 146 132083 - 132928 1023 281 aa, chain - ## HITS:1 COG:STM3555 KEGG:ns NR:ns ## COG: STM3555 COG0395 # Protein_GI_number: 16766841 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 281 1 281 281 462 97.0 1e-130 MIENRRGLTIFSHTMLMLGIMVILFPLYVAFVAATLDNKAVFETPMTLIPGTQLLENMKY IWVNGVGVNSAPFWLMMLNSFIMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFIT LMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARID GASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVNLGTAVAGIKGMIAT GEGTTQWNQVMAAMLLTLIPPVIIVLAMQRAFVRGLVDSEK >gi|283548475|gb|GG730302.1| GENE 147 132925 - 133812 1111 295 aa, chain - ## HITS:1 COG:STM3556 KEGG:ns NR:ns ## COG: STM3556 COG1175 # Protein_GI_number: 16766842 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 295 1 295 295 470 95.0 1e-132 MSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSLQSVDPFGLSSQFVGLENFV ALFHDPYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVNYVVRGSRFYQTLMLLPYAVAPA VAAVLWIFLFNPGRGLITHLLGEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAA LQSIPRSLIEAAAIDGAGPVRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVSDAATAG GPVQATTTLIYKIYREGFVGLDLSASAAQSVVLMFLVIILTVVQFRYVESKVRYQ >gi|283548475|gb|GG730302.1| GENE 148 133923 - 135239 1755 438 aa, chain - ## HITS:1 COG:STM3557 KEGG:ns NR:ns ## COG: STM3557 COG1653 # Protein_GI_number: 16766843 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 438 1 438 438 822 92.0 0 MISLRHTALGLALSLAFAGQALAVTTIPFWHSMEGELGKEVDSLAQRFNAANPDYKIVPQ YKGNYEQSLSAGIAAFRTGNAPALLQVYEVGTATMMASKAIKPVYEVFKEAGINFDESQF VPTVSGYYTDSKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAEYTAKLK AAGMKCGYASGWQGWIQIENFSAWNGLPVATKNNGFDGTDAVLEFNKPEQVKHIALLEEL NKKGDFSYFGRKDESTEKFYNGDCAITTASSGSLADIRHYAKFNYGVGMMPYDADVKGAP QNAIIGGASLWVMQGKDKATYEGVAQFLNFLAKPEIAAEWHQKTGYLPITTAAYDLTREQ GFYEKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKTPQQALDA AVERGNQLLRRFEQSTKS >gi|283548475|gb|GG730302.1| GENE 149 135475 - 135882 237 135 aa, chain - ## HITS:1 COG:no KEGG:KP1_1290 NR:ns ## KEGG: KP1_1290 # Name: not_defined # Def: putative dTDP-glucose pyrophosphorylase # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 133 49 181 183 171 66.0 1e-41 MNDLPRQTDVLPMPAIDGVTVSFNGLNYLRPELLLDFVSISSAPLLAVTPVALLYSCVGV LQQVDLRKLPVEVVGRVVYPITSLKLPALRGKLIINAQSRRLKFLESLVAISPEDNIHGM QVLGLALEFTFAQPE >gi|283548475|gb|GG730302.1| GENE 150 136023 - 136280 217 85 aa, chain - ## HITS:1 COG:no KEGG:t3963 NR:ns ## KEGG: t3963 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 1 85 8 92 92 67 49.0 3e-10 MIGSLLLALAPGAQALEPQTFDPRDPSIWEEKPANPLAQSSSPCEVFTSSVCPGWEDEKS DLQRERERRERERLQNEYERRWRRD >gi|283548475|gb|GG730302.1| GENE 151 136404 - 137135 272 243 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 11 233 1 229 245 109 29 2e-22 MVVEPKMEKVMLSFDKVSAHYGKIQALHEVSLYINQGEIVTLIGANGAGKTTLLGTLCGD PRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAEKDQFQ ERIKWVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ QIFNTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAY LGG >gi|283548475|gb|GG730302.1| GENE 152 137135 - 137902 258 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 245 1 230 245 103 25 8e-21 MSQPLLSVNGLMMRFGGLLAVNNVELELRPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG TIKLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGVFSGLLKT PSFRRAQSEALDRAATWLARIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEP AAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQ IRNNPDVIRAYLGEA >gi|283548475|gb|GG730302.1| GENE 153 137899 - 139176 1785 425 aa, chain - ## HITS:1 COG:STM3562 KEGG:ns NR:ns ## COG: STM3562 COG4177 # Protein_GI_number: 16766848 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 425 1 425 425 709 95.0 0 MKPMHFAMALLSAAMFFILAGVFMGVQLELDGTKLVVDTAADIRWQWVFIGTGVVFLFQL LRPAFQKSLKSVSGPKFILPAIDGSTVKQKLFLVALLVIAVAWPFMVSRGTVDIATLTMI YIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGF LLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRSAR EGGWDTFSNFFNVKYDPSDRVIFLYLVALLLVVFSLFVINRLLRMPLGRAWEALREDEIA CRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMG SQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGEA KGEQA >gi|283548475|gb|GG730302.1| GENE 154 139173 - 140099 1417 308 aa, chain - ## HITS:1 COG:STM3563 KEGG:ns NR:ns ## COG: STM3563 COG0559 # Protein_GI_number: 16766849 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid ABC-type transport system, permease components # Organism: Salmonella typhimurium LT2 # 1 308 1 308 308 477 97.0 1e-134 MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAA LMMMGIDSSWLLVAAGFVGAIVIASAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQN YVSLTEGSRDVALPSLFNGQWTVGSSENFSASITTMQLVIWIVTFLAMLALTLFIRYSRM GRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGM KAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLSTEYKDVVSFALLILVLLVMPTGIL GRPEVEKV >gi|283548475|gb|GG730302.1| GENE 155 140161 - 141270 1372 369 aa, chain - ## HITS:1 COG:livK KEGG:ns NR:ns ## COG: livK COG0683 # Protein_GI_number: 16131330 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli K12 # 1 369 1 369 369 665 92.0 0 MKRNAKTIIAGVIALAMSHAVMAEDIKVAVVGAMSGPVAQWGDMEFNGARQAIKDINAKG GIKGDKLVAVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMI SPGATNPELTQRGYAHIMRTAGLDSSQGPTAAKYILEKVKPQRIAIIHDKQQYGEGLARS VQDSLKAGKANIVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVG LKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANKAIVDALKADKKDPSGPYV WITYAAVQSLATAMDRSGSKEPLDLVKDLKAHGADTVIGPLKWDEKGDLKGFEFGVFQWH ADGSSTVAK >gi|283548475|gb|GG730302.1| GENE 156 141694 - 142077 448 127 aa, chain + ## HITS:1 COG:no KEGG:SSPA3188a NR:ns ## KEGG: SSPA3188a # Name: yhhK # Def: hypothetical protein # Organism: S.enterica_Paratyphi_AKU12601 # Pathway: not_defined # 1 127 1 127 127 229 94.0 3e-59 MKLTIVRLDNFSAQDQIDLGKIWPEYSASSLSVDETHRIYAARFNERLLGAVRVTLSGTQ GALDSLRVREITRRRGVGQYLIEEVIRENPSVSSWWMADVGVEDRDVMAAFMQALGFTAQ ADGWEKR >gi|283548475|gb|GG730302.1| GENE 157 142165 - 143268 1330 367 aa, chain - ## HITS:1 COG:ECs4309 KEGG:ns NR:ns ## COG: ECs4309 COG0683 # Protein_GI_number: 15833563 # Func_class: E Amino acid transport and metabolism # Function: ABC-type branched-chain amino acid transport systems, periplasmic component # Organism: Escherichia coli O157:H7 # 1 367 20 386 386 684 95.0 0 MKMKGKALLAGCIALSLSNMAFAKDIKVAVVGAMSGPVAQYGDQEFTGAEQAIADINAKG GVKGDKLVVVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMI TPAATAPELTARGYKLVMRTTGLDSDQGPTAAKYILEKVKPQRIAIIHDKQQYGEGLARA VQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQSRAAG LKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFV WTTYAALQSLQAGLNQSDDPAEIAKYLKANSVETVMGPLSWDEKGDLKGFEFGVFDWHAN GTATDAK >gi|283548475|gb|GG730302.1| GENE 158 143594 - 144448 1202 284 aa, chain - ## HITS:1 COG:STM3568 KEGG:ns NR:ns ## COG: STM3568 COG0568 # Protein_GI_number: 16766854 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Salmonella typhimurium LT2 # 1 284 1 284 284 495 97.0 1e-140 MTKEMQNLALAPVGNLESYIRAANAWPMLSADEERALAEKLHYQGDLEAAKTLILSHLRF VVHVARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDM TFDMSSDDESDSQPMAPVLYLQDKSSNFADGIEEDNWEDQAANKLTHAMEGLDERSQDII RARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA >gi|283548475|gb|GG730302.1| GENE 159 144719 - 145792 1073 357 aa, chain - ## HITS:1 COG:STM3569 KEGG:ns NR:ns ## COG: STM3569 COG2177 # Protein_GI_number: 16766855 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Salmonella typhimurium LT2 # 6 357 1 351 351 666 94.0 0 MEAWRMNRRDAINQIKQFGGRLDRFRKSGGAPGDGGRNAPKRAKSAPKPNSRKTNVFNEQ VRYAFQGALQDLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVNQAASQYYPSPQITVYL QKTLDDDAAARVVGQLQAEQGVEKVNYLSREDALGEFRNWSGFGGALDMLEENPLPAVAV VIPKLDFQGTESLNTLRDRIAQINGIDEVRMDDSWFARLAALTGLVGRVSAMIGVLMVAA VFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGALLGFSGAFLSLILSEILV MRLSSAVTEVAQVFGTKFDINGLSFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPD >gi|283548475|gb|GG730302.1| GENE 160 145770 - 146438 356 222 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 216 4 220 223 141 36 4e-32 MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIY FSGHDISRLKNREVPFLRRQIGMIFQDHHLLMDRTVFDNVAIPLIIAGASGDDIRRRVSA ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF EEFNRVGVTVLMATHDIGLISRRSYRQLVLSDGHLHGGLAHE >gi|283548475|gb|GG730302.1| GENE 161 146441 - 147925 750 494 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 195 491 21 321 336 293 48 7e-78 MAKEKKRGFFSWLGFGQKEQAPENETELKNEEQQPVAEENTVVDEQPRAEETRSEAQTEA FAAEVVEVTEQVAEIEKLQPEEEPVAEQQQPDDEPVVETPAAAIEHEELPLPEEVKTEAV SAEEWQAEAETVEIVEAVEEEAENEPQLTDEELEAQALAAEAAEEAVMVVPVEEPAAEEV VQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVE TTRKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNVEGKTPFVILMVGVNG VGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNSIPVIAQHTGADSASV IFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDAST GQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPF KADDFIEALFARED >gi|283548475|gb|GG730302.1| GENE 162 148202 - 148798 675 198 aa, chain + ## HITS:1 COG:yhhF KEGG:ns NR:ns ## COG: yhhF COG0742 # Protein_GI_number: 16131337 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Escherichia coli K12 # 1 198 1 198 198 360 87.0 1e-100 MKKTNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVMVDARCLDCF AGSGALGLEALSRYAADATLLEMDRAVSQQLQKNLATLKANHARVVNTNTLAFLAQTGTP HNVVFVDPPFRKGLLEETLTLLETHGWLADEAYIYVESEVENGLPPVPVNWTLYREKVAG QVAYRLYQREAQGEHDAD >gi|283548475|gb|GG730302.1| GENE 163 148788 - 149063 365 91 aa, chain + ## HITS:1 COG:ECs4315 KEGG:ns NR:ns ## COG: ECs4315 COG3776 # Protein_GI_number: 15833569 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 86 1 86 89 130 87.0 7e-31 MLINLGRLLMLCVWAFLLLNIFHPFPRPLNIFVNVALIFMVLMHGMQLALLKSTMPKDGP QMTSGEKIRIFLFGVFELLVWQKKIKDQLKK >gi|283548475|gb|GG730302.1| GENE 164 149116 - 149457 341 113 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283835860|ref|ZP_06355601.1| ## NR: gi|283835860|ref|ZP_06355601.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 113 29 141 141 221 100.0 1e-56 MFFMIPVTGCFTLGIAYLAFAKSMQPPKFFDRTFTIVFHVAGVGFVIGNILSFIVIFYPL GTNYVLCVRPGPTSGTYYTRTEEICEQVKHLRKTRASKDIPKLKDQLDGILPP >gi|283548475|gb|GG730302.1| GENE 165 149628 - 150506 473 292 aa, chain - ## HITS:1 COG:no KEGG:ROD_44041 NR:ns ## KEGG: ROD_44041 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 6 265 10 268 288 185 39.0 2e-45 MERYYDWIKNHREDILRGNNWQRNQRIENEIRALKNNLHSNTQHIMLLTLEEAQGVIDDF LGSKPVSFSTNYAGNFKDAADATKKLSKLFSYQQAGKIVFTLKGLGIKATQYAYQGKVYV KITGYPSLRRTLNGTRYRINHPKVLEVGIGSAGFRNGIMSGARFCIWFSACWRLIELAFK SEHDVAALLGNVTMDVAKVIVSIFVSQSVGSALGLAVPLLFSSAAVPVWGEIVGVVVLGF IIAKTLNEVDEKYELSDKVIACIREGLKERQRIEEWNIQRLGYRSSLYGGNY >gi|283548475|gb|GG730302.1| GENE 166 150516 - 150752 137 78 aa, chain - ## HITS:1 COG:ECs0216 KEGG:ns NR:ns ## COG: ECs0216 COG3157 # Protein_GI_number: 15829470 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 4 78 85 159 159 100 58.0 9e-22 MNGEFSFYRTNPAGLNERYYTIKLINARISSIHLQVPHIIDDSAGQPEEIIELSYESITW EHIMAGTSAYSLWDERIY >gi|283548475|gb|GG730302.1| GENE 167 151236 - 151595 279 119 aa, chain - ## HITS:1 COG:no KEGG:EcSMS35_3750 NR:ns ## KEGG: EcSMS35_3750 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SECEC # Pathway: not_defined # 1 115 1 115 119 192 88.0 3e-48 MSKPPLFFIIIIVLIVVVASFRFVQQRREKADNDAAPLMQKLVVVSNKREKPLNDRRSRQ QEVSPAGTSMRYEASFKPQSGGLEQTFRLDAQQYHALTVGDKGTLSYKGSRFEEFKPGQ >gi|283548475|gb|GG730302.1| GENE 168 151737 - 152363 765 208 aa, chain + ## HITS:1 COG:STM3575 KEGG:ns NR:ns ## COG: STM3575 COG3714 # Protein_GI_number: 16766861 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 208 1 208 208 292 88.0 2e-79 MLWSFIAVCLSAWLFVDASYRGPAWQRWVFKPLTLLLLALLAWQAPMFNAISYLVLAGLL ASLLGDALTLLPRQRLLYAVGAFFLSHLLYTIYFASQMTLSFFWPLPLVLIVLGALLIAI IWTRLEELRLAICTFIGITLMMVWMAGELWFFRPTGPALSAFLGASLLFIGNFVWLGSHY RHRFRADNAIAAACYFAGHFLIVRSLYL >gi|283548475|gb|GG730302.1| GENE 169 152574 - 154637 2579 687 aa, chain + ## HITS:1 COG:STM3576 KEGG:ns NR:ns ## COG: STM3576 COG2217 # Protein_GI_number: 16766862 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Salmonella typhimurium LT2 # 2 686 47 731 732 1068 90.0 0 MGTRYSWKVAGMDCAACARKVENAVRQVSGVNQVQVLFATEKLVVDAGSDIRQQVESAVQ KAGYTLRDEQAPEAAPESRFKENLPLISLIIMMAISWGLEQFNHPFGQIAFIATTLVGLY PIARQALRLMKTGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGWAASRAR KGVSALMALKPETATRLRNGEREEVAINTLRPGDIIEVAAGGRLPADGKLVSGFASFDES ALTGESIPVERATGEKVPAGATSVDRLVTLEVLSEPGASAIDRILQLIEEAEERRAPIER FIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGCPCALVISTPAAIT SGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTIGKPRVTAIHPASGINEAELLAL AAAVEQGATHPLAQAIVREAQTRELAIPVATEQRALVGSGIEAQVNGEHVLICAAGKQPA DAFAGQISELESAGQTVVLVLRNDVVLGVLALQDTLRDDARSAISELNQIGVKGVILTGD NPRAAAAIAAELGLEFKAGLLPEDKVRAVTSLNQQSPLAMVGDGINDAPAMKAATIGIAM GSGTDVALETADAALTHNRLRGLVQMIQLARATHANIRQNIAIALGLKGIFLVTTLLGIT GLWLAVLADTGATVLVTANALRLLRKG >gi|283548475|gb|GG730302.1| GENE 170 154716 - 154961 418 81 aa, chain - ## HITS:1 COG:ECs4319 KEGG:ns NR:ns ## COG: ECs4319 COG0425 # Protein_GI_number: 15833573 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Escherichia coli O157:H7 # 1 80 1 80 81 146 90.0 9e-36 MSDLFTSPDHTLDAQGLRCPEPVMMVRKTVRGMQAGETLLIVADDPATTRDIPGFCTFME HELVAKETDSLPYRYLVRKGQ >gi|283548475|gb|GG730302.1| GENE 171 155130 - 155795 793 221 aa, chain + ## HITS:1 COG:ECs4320 KEGG:ns NR:ns ## COG: ECs4320 COG1738 # Protein_GI_number: 15833574 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 1 221 1 221 221 355 93.0 3e-98 MTPFTQNQRLKALFWLSLFHLLVITSSNYLVQLPISIFGFHTTWGAFSFPFIFLATDLTV RIFGAPLARRIIFAVMVPALLVSYVISSLFYMGSWQGFGALLHFNLFVARIAAASFMAYA LGQILDVHVFNRLRQNRRWWLAPTASTLFGNISDTLAFFFIAFWRSPDAFMAEHWMEIAL VDYCFKVLISIIFFLPMYGVLLNMLLKRLADKSEISALQTS >gi|283548475|gb|GG730302.1| GENE 172 155868 - 156425 748 185 aa, chain + ## HITS:1 COG:no KEGG:CKO_04902 NR:ns ## KEGG: CKO_04902 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 185 15 199 199 305 94.0 8e-82 MRNLVKYVGIGLLVMGLAACDNSDTKAPAEGAAAESSATGQPVSLLDGKLSFSLPADMTD QSGKLGTQANNMHVYSDATGQKAVIVIVGDNTNEDLAVLAKRLEDQQRSRDPQLQVVTNK SIELKGHTLQQLDSIISAKGQTAYSSVVLGKVDNQLLTLQITLPADDQQKAQTTAENIIN TLVIQ >gi|283548475|gb|GG730302.1| GENE 173 156429 - 157646 1519 405 aa, chain - ## HITS:1 COG:yhhS KEGG:ns NR:ns ## COG: yhhS COG0477 # Protein_GI_number: 16131345 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 405 15 419 419 605 89.0 1e-173 MPEPVAEPTLSGLRLNLRIVSVVMFNFASYLTIGLPLAVLPGYVHDVMGFSAFWAGLVIS LQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLLAGSTNGWPLASLLLLCLG RVILGIGQSFAGTGSTLWGVGVVGSMHIGRVISWNGIVTYGAMAIGAPLGVLCYAWGGLR GLALTVMGVALLAILLALPRAAVKASKGKPLPFRAVLGRVWLYGMALALASAGFGTIATF ITLFYDAKGWDGAAFALTLFSGTFVGTRLLFPNSINRLGGLNVAMICFSVEMVGLMLVGM ASVPWMAKIGVLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGVTGPLA GLVMTWAGVPVIYLAAAGLVAVALLLTWRLKKRPLVEPPEAASSS >gi|283548475|gb|GG730302.1| GENE 174 157779 - 158828 1195 349 aa, chain + ## HITS:1 COG:yhhT KEGG:ns NR:ns ## COG: yhhT COG0628 # Protein_GI_number: 16131346 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli K12 # 1 349 28 376 376 535 89.0 1e-152 MTTAQPDKTGMHILLKLAALVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVR RPVAITLVVVVMLIVLTALVGVLASSITEFMAMLPKYNKELTRKVLYLQEMVPFLNLHMS PERMLQRMDSDKLMTFTTTLMTSLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALNNPQ IHIAGLHRALKGVSHYLALKTLLSLWTGAIVWLGLALMGIQFALMWGVLAFLLNYVPNIG SVISAVPPMIQALLFNGIYECVLVGALFLVVHMVIGNILEPRMMGHRLGLSTLIVFLSLL VWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKLAILLGPGRPKSRLPG >gi|283548475|gb|GG730302.1| GENE 175 158891 - 159481 690 196 aa, chain + ## HITS:1 COG:STM3583 KEGG:ns NR:ns ## COG: STM3583 COG2091 # Protein_GI_number: 16766869 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Salmonella typhimurium LT2 # 1 191 1 190 192 308 83.0 4e-84 MYQIVLGKVSVLSAGELPAALREQAPQGARRARWLAGRVLLSHALLPLPDIIYGEQGKPA FSADTPLWFNLSHSGDDIALLLSDEGEVGCDIEVVRPRDNWQTLANTVFSLGEHAELEAE RPEQQLAAFWRIWTRKEAIVKQRGGSAWQIVSVDSTALTSSLSVSQCQIDTLSLAVCTPT PFTLTADAVQRLEALA >gi|283548475|gb|GG730302.1| GENE 176 159473 - 159979 639 168 aa, chain - ## HITS:1 COG:VC2240 KEGG:ns NR:ns ## COG: VC2240 COG3479 # Protein_GI_number: 15642238 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phenolic acid decarboxylase # Organism: Vibrio cholerae # 4 164 3 163 174 242 62.0 3e-64 MSAFDKHDLSGFVGKHLVYTYDNGWNYEIYVKNDTTLDYRIHSGIVGNRWVKDQRAYIVR VGASVYKISWTEPTGTDVSLIVNLGDKLFHGTIFFPRWVINNPEKTICFQNDHIPLMMSY RDAGPAYPTEVIDEFATITFVRDCGANNDDVIACAASELPENFPENLR >gi|283548475|gb|GG730302.1| GENE 177 160080 - 160940 1009 286 aa, chain + ## HITS:1 COG:PA3225 KEGG:ns NR:ns ## COG: PA3225 COG0583 # Protein_GI_number: 15598421 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 3 284 5 290 309 135 34.0 1e-31 MHKTTLEQWALLEKVVELGSFAKAAEETNRSQSSVSYNLALLQERLGVTLLTPEGRRAVL TPAGELLLAQVKPLLKAFLWVETRAATLQNGARTRLDLLVDSIFPRKRLFAILKQFQLAW PQTQVRLTEVLENADDRLAAHADADVMVLTRRQDVTGRGEWLMNIDFVAVAHRDHPLCML DAPLDEEALRAWPLIRIADRDNSQQPVRDAWTFSTVDAAIDAVMYQVGYGWLPEERIQTQ LAQGLLRPLPLSHGARRATPLHLIVKDTLAPLDEQVSTLLRLLREH >gi|283548475|gb|GG730302.1| GENE 178 161032 - 161433 563 133 aa, chain + ## HITS:1 COG:STM3584 KEGG:ns NR:ns ## COG: STM3584 COG0864 # Protein_GI_number: 16766870 # Func_class: K Transcription # Function: Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain # Organism: Salmonella typhimurium LT2 # 1 133 1 133 133 203 96.0 6e-53 MQRVTITLDDDLLETLDGLSQRRGYNNRSEAIRDILRGALAQETTQEHGTQGFAVLSYVY EHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVISQRG VRHGHLQCLPKEE >gi|283548475|gb|GG730302.1| GENE 179 161531 - 162655 1212 374 aa, chain - ## HITS:1 COG:yhhJ KEGG:ns NR:ns ## COG: yhhJ COG0842 # Protein_GI_number: 16131357 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli K12 # 1 374 2 375 375 618 92.0 1e-177 MRRLRNIYNLGIKELRSLLGDKAMLTLIVFAFTVSVYSSATVLPGSLHLAPIAIADMDQS QLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAVNIPPDFQRDVLAGRQPDIQVN VDATRMSQAFTGNSYIQNIISGEVNSFVARYRDNNEPPVALEMRMRFNPNLEPARFGAVM AIINNITMLAIVLTGSALIREREHGTIEHLLVMPVTPFEIMMAKIWSMGLVVLVVSGLSL MLMVKGVLGVPIEGSILLFMLGVALSLFATTSIGIFMGTLARSMPQLGLLMILVLLPLQM LSGGSTPRESMPQAVQDIMLTMPTTHFVSLAQAILYRGAGFSIVWPQFLTLLAIGSAFFL IALMRFRKTIGTMA >gi|283548475|gb|GG730302.1| GENE 180 162655 - 165402 2967 915 aa, chain - ## HITS:1 COG:STM3586_1 KEGG:ns NR:ns ## COG: STM3586_1 COG1131 # Protein_GI_number: 16766872 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 18 553 1 534 534 995 91.0 0 MTHLALVPVPPVAHLDGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISG ARVIEHGNVMVLGGDMRDPQHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHD KAEREARITELLNSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDP LSRAQFWDLIDSIRQRQTNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAQQLREKTA SDTLEQAFIALLPEAQRQAHKPVVIPPYHAEQEEIAIEAKDLTMRFGKFVAVDHVNFRIP RGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQAVDPKNIDTRRRVGYMSQAFSL YSELTVRQNLELHARLFHIPEAEIPGRVQEMSERFSLTDVEDALPGALPLGIRQRLSLAV AVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRKDKVTIFISTHFMNEAERCDRMSLM HAGKVLASGTPQELVKRRGAASLEEAFISWLQEAAGPAPEAQLPPANAPAGHENHQPPRQ GFSLRRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFSVLDRDQT VSSQAWTLNLAGSRYFIEQPPLTSYDELDRRMRSGEVAVAIEIPPNFGRDIARGTPVKIG VWVDGAMPSRAETVRGYVQAMHQTWLQDVMARQPNTNGQNGLMTIETRYRYNPDVKSLPA IVPAVIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIVLGMLNF LLLCALSVFVFGVPHKGSFLTLTLAALLYVTIATGLGLLISTFMKSQIAAIFGTAIITLI PATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIARGTFSKALDLTDLWQLFIPLAIAIP VVIGLSVLLLKKQEG >gi|283548475|gb|GG730302.1| GENE 181 165399 - 166442 1089 347 aa, chain - ## HITS:1 COG:STM3587 KEGG:ns NR:ns ## COG: STM3587 COG0845 # Protein_GI_number: 16766873 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Salmonella typhimurium LT2 # 1 347 9 355 355 509 94.0 1e-144 MWWGMGILVMVAAIAWWMLRPAGIPEGFAASNGRIEATEVDIATKIAGRIDTILVSEGQF VRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVAAARALLEQRQSETRAAQSVVKQREAE LQSVSKRHVRSRSLSQRGAVSEQQLDDDRAAAESARAALESAKAQVSAAKAAIEAARTSI IQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLSAGGRVLNMVDLSDV YMTFFLPTEQAGLLKIGGEARLVLDAAPDLRIPATISFVASVAQFTPKTVETSDERLKLM FRVKARIPPELLQQHLEYVKTGLPGMAWVRVDENRAWPADLTVRLPQ >gi|283548475|gb|GG730302.1| GENE 182 166878 - 167276 104 132 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283835879|ref|ZP_06355620.1| ## NR: gi|283835879|ref|ZP_06355620.1| hypothetical protein CIT292_10281 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_10281 [Citrobacter youngae ATCC 29220] # 1 132 64 195 195 262 100.0 5e-69 MLVDNASDLRKKSNRKLERILQFAQTAPLCCVIEAWKEVETSTADLIRAYGYDPDNVQLS KMFRGIIYENDYPWSLYEDYRRLMMLKNKITHTGDFELNEVDVERYARTALDLALFIKKL AGEAANKKHDDI >gi|283548475|gb|GG730302.1| GENE 183 167560 - 168753 1081 397 aa, chain - ## HITS:1 COG:STM3588 KEGG:ns NR:ns ## COG: STM3588 COG2081 # Protein_GI_number: 16766874 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Salmonella typhimurium LT2 # 1 397 1 397 398 736 89.0 0 MERFDTVIIGAGAAGMFCAAQAGQAGSRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPA AYLSQNPHFCKSALARYTQWDFIDLVGKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEK GNVTMRLRSEVLSVEREGDDFILALNGMTVGTKKLVIASGGLSMPGLGATPFGYKIAEQF GLNVLPTRAGLVPFTLHKPLLEQLQVLSGVSVSSVITAEDGTVFRESLLFTHRGLSGPAV LQISSFWQPGEFVSINLLPDVDLASFLDEQRSAHPNQSLKNTLAMQLPKRLVECLQQLGQ IPDVSLKQLNVRDRQTLVETLTEWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVP GLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLVVQ >gi|283548475|gb|GG730302.1| GENE 184 168983 - 170482 1650 499 aa, chain + ## HITS:1 COG:STM3589 KEGG:ns NR:ns ## COG: STM3589 COG0306 # Protein_GI_number: 16766875 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Salmonella typhimurium LT2 # 1 499 1 498 498 843 94.0 0 MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIYTRAMRSQLAVVMAALF NFFGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLLAAIIWNLGTWYFGLPASS SHTLIGAIIGIGLTNALMNGTSVVDALNIPKVMGIFASLIISPIVGLVVAGGLIFLLRRY WSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSAIGVAFSHGANDGQKGIGLVMLV LIGVAPAGFVVNMNASGYEITRTRDAINNVEVFFQQRPDLLKQATGVDQLIPSPTETVTT ASTEFHCHPANTINALERAKGMLANLESFDKLSVEQRGQLRRIMLCISDTTDKVVKLPGV NGDDQRLLKKLKADMLSTIEYAPIWIIMAVALALGIGTMIGWRRVATTIGEKIGKKGMTY AQGMSAQMTAAVSIGLASYTGMPVSTTHVLSSSVAGTMVVDGGGLQRKTVTSILMAWVFT LPAAIILSGVLYWLSLKLI >gi|283548475|gb|GG730302.1| GENE 185 170547 - 170828 176 93 aa, chain - ## HITS:1 COG:no KEGG:CKO_04942 NR:ns ## KEGG: CKO_04942 # Name: not_defined # Def: universal stress protein UspB # Organism: C.koseri # Pathway: not_defined # 1 93 19 111 111 186 98.0 3e-46 MARYFSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPNKQMRLVWYIYAQRYRDHHDDE FIRRCERVRGQFILTSALCGLVLISMVALIIWH >gi|283548475|gb|GG730302.1| GENE 186 171275 - 171712 670 145 aa, chain + ## HITS:1 COG:ECs4367 KEGG:ns NR:ns ## COG: ECs4367 COG0589 # Protein_GI_number: 15833621 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Escherichia coli O157:H7 # 1 144 1 144 144 270 99.0 8e-73 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQK RISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLM SSARQLINTVHVDMLIVPLRDDEEA >gi|283548475|gb|GG730302.1| GENE 187 171994 - 173466 1904 490 aa, chain + ## HITS:1 COG:STM3592 KEGG:ns NR:ns ## COG: STM3592 COG3104 # Protein_GI_number: 16766878 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Salmonella typhimurium LT2 # 1 490 1 489 489 823 94.0 0 MNKTAPTGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFVTFGAFA ALVYGLISIGGYVGDHLLGTKRTLVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG LFKANPASLLSKCYPPKDARLDGAFTLFYMSINIGSLLSLSLAPVIADKFGYAVTYNLCG AGLIVALLVYFACRGMVKNIGSEPDHKPLNFRNLFCVLAGTVVTVFICAWLMHNVKIANL VLIVLSIAVTIIFFRQAFKLDKTGRNKMFVAFILMLEAVVFYVLYAQMPTSLNFFAINNV HHEILGFAINPVSFQALNPFWVVVASPVLAAIYTRLGNKGKDLTMPMKFTLGMFLCSLGF LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELLISALGLAMVAALVPQHLMGFILGMW FLTQAAAFLMGGYVATFTAVPENITDPLQTLPIYTNVFSKIGLVTLAVTVVMAIMVPWLN RMINTPNTEQ >gi|283548475|gb|GG730302.1| GENE 188 173551 - 174054 636 167 aa, chain - ## HITS:1 COG:PA2692 KEGG:ns NR:ns ## COG: PA2692 COG1959 # Protein_GI_number: 15597888 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 166 1 166 174 202 59.0 2e-52 MAFYSSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSI EGKGGGFQLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVR SVMDMAQQRMEEALGQHTILDLARKMYRKAPDTFVVEVQEWIDARKG >gi|283548475|gb|GG730302.1| GENE 189 174287 - 175486 1077 399 aa, chain + ## HITS:1 COG:PA2691 KEGG:ns NR:ns ## COG: PA2691 COG1252 # Protein_GI_number: 15597887 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Pseudomonas aeruginosa # 1 399 1 400 401 437 59.0 1e-122 MRKQILIVGAGFAGMWAALSAARLADKHQQTIDITVIAPQPELRVRPRFYESAVQTLVAP LQPLFDVTGVNFLQGHVEQILPASKEVSWKDASGEIHLRRYDRLVLASGSHVNRDAVAGA AEHAFDLDQLESAAKLEQHLKDLALQPQSEARNTVVVCGGGFTGIEMALELPGRLREILG ADAKTRVVVVERGAQPGGRWSQELRDVIIEASAELGVEWLVNAEVECVNTSGVTLKDGKV IAAQTVIWTVGVQANSLTAQINAPRDRQGRLHVNANLQVVGHDDIYATGDVAYAATDDKG NHALMTCQHAILLGKFAGNNAAADLLDVPPLPYRQENYVTCLDLGAWGAVYTEGWDQQVK LTRAEAKKLKVSIVSELIYPPKAERAIAFEIADPLAPFV >gi|283548475|gb|GG730302.1| GENE 190 175869 - 176618 834 249 aa, chain - ## HITS:1 COG:ECs4369 KEGG:ns NR:ns ## COG: ECs4369 COG0500 # Protein_GI_number: 15833623 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Escherichia coli O157:H7 # 1 248 1 248 250 467 97.0 1e-132 MKICLIDETGAGDGALSVLATRWGLEHDEGNLMALVMTPEHLELRKRDEPKLGGIFVDFV GGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNP VVAALLDDGLARGYADAEIGGWLQDRLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKS ALVKKEMRVFQSLVGPDLDADGLLEPARQLATKRVVVKRPDYAPPLADVATPNAVVTKGH RFDIYAGTA >gi|283548475|gb|GG730302.1| GENE 191 176626 - 178668 2737 680 aa, chain - ## HITS:1 COG:prlC KEGG:ns NR:ns ## COG: prlC COG0339 # Protein_GI_number: 16131370 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Escherichia coli K12 # 1 679 1 679 680 1322 96.0 0 MTNPLLTPFELPPFSKIQPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVD DVLGRIFSPVSHLNSVKNNPELREAYEQTLPLLSEYSTWVGQHEGLYNAYRDLRDGDHYA TLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNLYSNNVLDATMGWSKL VTDEAELSGMPESALAAAKAQAEAKEQEGYLLTLDIPSYLPVMTYCDNQGLREEMYRAYS TRASDQGPNAGKWDNSPIMAEILALRHELAQLLGFESYAFKSLATKMAENPQQVLDFLTD LAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPEN KAVNGLFEVVKRIYGITAKERADVDVWHPEVRFFELYDENNELRGSFYLDLYAREHKRGG AWMDDCVGQMRKTDGTLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLT RIETAGVSGINGVPWDAVELPSQFMENWCWEPQALAFISGHYETGEPLPKELLDKMLAAK NYQAALFILRQLEFGLFDFRLHAEFSPQQGAKILETLAEIKKQVAVVPGPSWGRFPHAFS HIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILTRGGSEEPMELFK RFRGREPQLDAMLEHYGIKS >gi|283548475|gb|GG730302.1| GENE 192 178877 - 179719 906 280 aa, chain + ## HITS:1 COG:ECs4371 KEGG:ns NR:ns ## COG: ECs4371 COG2961 # Protein_GI_number: 15833625 # Func_class: R General function prediction only # Function: Protein involved in catabolism of external DNA # Organism: Escherichia coli O157:H7 # 1 280 1 280 280 520 92.0 1e-147 MLSYRHSYHAGNHADVLKHTVQSLIIESLKEKEKPFLYLDTHAGAGRYQLSSEHAERTGE YLEGIARIWQQDDLPAELEPYIGVVQHFNRSGQLRYYPGSPLIARQLLREQDSLQLTELH PSDFPLLRGEFQKDERARVAKADGYQQLKAKLPPASRRGLILIDPPYEIKTDYQAVVTGI NEGYKRFATGTYALWYPVVLRQQIKRMIHDLEDTGIRKILQIELAVRPDSDQRGMTASGM IVINPPWKLEQQMNSVLPWLHSKLVPAGTGHTSVSWIVPE >gi|283548475|gb|GG730302.1| GENE 193 179824 - 181176 503 450 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 444 4 442 458 198 31 3e-49 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIR EAIHMYGPDYGFDTTINKFDWDKLIASRTAYIDRIHTSYDNVLGKNNVDVIKGFARFVDA KTIEVNGETITADHILIATGGRPSHPNIPGVEYGIDSDGFFELPALPKRVAVVGAGYIAV ELAGVINGLGVQTHLFVRKHAPLRSFDPMIVETLVEVMNAEGPTLHTHAIPKAVVKNADG SLTLQLEDGRSETVDCLIWAIGREPATDNFNLTATGVKTNEKGYIVVDKYQNTSVPGIYA VGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEQQAR EQHGDDQVKVYKSSFTAMYTAVTSHRQPCRMKLVCVGPEEKIVGIHGIGFGMDEMLQGFA VALKMGATKKDFDNTVAIHPTAAEEFVTMR >gi|283548475|gb|GG730302.1| GENE 194 181263 - 182426 1174 387 aa, chain - ## HITS:1 COG:PA4041 KEGG:ns NR:ns ## COG: PA4041 COG4948 # Protein_GI_number: 15599236 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Pseudomonas aeruginosa # 1 387 1 388 389 317 47.0 4e-86 MRILDVVEITKPIASPIRNAYIDFSKMTTSLVAVVTDVEVDGRRVVGYGFNSNGRYGQGG LIRERFRNRILEANPESLLNAEGDNLDPHKIWDVMMSNEKPGGHGERSVAVGTLDMAIWD AVAKIANKPLFRLLAEMKGVEANPRVFVYAAGGYYYPGKDLSALRQEMRGYLNRGYNVVK MKIGGASLEEDRRRIEAVLTEIGDEARLAVDANGRFDLETGIAYAKMLRDYPLFWYEEAG DPLDYSLQAALSEFYPGAMATGENLFSHQDARNLLRYGGMRPDRDYLQFDCALSYGLVEY LRTLDVLAQFGWSPSRCIPHGGHQMSLNIAAGLGLGGNESYPDLFQPYGGFPDSVKVEEG HIVMPELPGIGFEGKSDLIKEMRALAQ >gi|283548475|gb|GG730302.1| GENE 195 182610 - 183536 693 308 aa, chain + ## HITS:1 COG:STM0764 KEGG:ns NR:ns ## COG: STM0764 COG0583 # Protein_GI_number: 16764129 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 307 20 326 327 433 62.0 1e-121 MQNRHHLELTWLEDCIALAQSLNFSRAAASRYVTQPAFSRRIVSLEEWLGTPIFERNRRG VSLTRAGEVFVAQVPELIRALYALRNETIEAAGNTRPDVIFSATHSLSFSFFPALMRNNE KIARFGSFRLLSDTLSACERMIEKGDAQFLLCYYHPHMHINLDQTKYLSVRLGRETLIPY AKCDPRSHQPLWQATGGKKFPFLSFSAESGLGRILSNTSPVNHARRGMDIAFTADLAATL LAMVKAGDGIAWLPESLAAPDVQAGTIAAAAPQKSGLWIPIDIRLFRPAGRMSRAVEELW EIFVGEQR >gi|283548475|gb|GG730302.1| GENE 196 183602 - 184996 1314 464 aa, chain - ## HITS:1 COG:yhjA KEGG:ns NR:ns ## COG: yhjA COG1858 # Protein_GI_number: 16131390 # Func_class: P Inorganic ion transport and metabolism # Function: Cytochrome c peroxidase # Organism: Escherichia coli K12 # 1 464 1 464 465 874 87.0 0 MKIITRLTAIAIAGIVICYFGLSGYVWYHDNQRSKRADVQASSLEANNKVLGFLREKGCD YCHTPSAELPFYSSFPVAKQLMNYDIQLGYKSFNLEAVRAALVADKPVSQSDLNKIEWVM QYDTMPPTRYTALHWAGKVSDAEREEILGWIAKQREQYYASNDTAAQHRNEPVQPIPESI PTDARKVALGFTLYHDPRISGDSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVF NSVFNVEQFWDGRAPTLQAQAGGPPLNPIEMASKSWDEIIQKLDKDPLLKQEFIAVYPQG FSGDNITDAIAEFEKTLITPNSPFDKWLRGDEGALTAQQKHGYQLFKDNKCATCHGGIIL GGRSFEPLGLKKDFNFGEVTAADIGRMNVTNELRDKLRQKVPGLRNVALTAPYFHRGDVP TLDGAVKLMLRYQVGKELPQEDIDDIVAFLESLNGVYTPYMQGK >gi|283548475|gb|GG730302.1| GENE 197 185423 - 187072 1370 549 aa, chain + ## HITS:1 COG:ECs4399 KEGG:ns NR:ns ## COG: ECs4399 COG1626 # Protein_GI_number: 15833653 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Escherichia coli O157:H7 # 1 549 1 549 549 1028 91.0 0 MLNQKLPHAPSEELTIDIDLLYEMDPCELKLDEMIEAEPEPEMIEGLPASDALTPADRYL ELFEHVQSSKLFADSKTFPDCAPKMDPLDILIRYRKVKRHRDFDLKRFVENHFWLPETPS SEYVSDPANSLKEHIDQLWPVLTREPQDHIPWSSLLPLPQSYIVPGGRFSETYYWDSYFT MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR GARRYLDHLKMEYAFWMDGADSLVLNQAYRHVIRMSDGSLLNRYWDDRDTPRDESWLEDV ETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDAGRLASIRTTQFIPIDLNAFLYKLES AIANISALKGDKEAEALFRQKANDRRDAVNRYLWDDENGCYRDYDWRREQMALFSAASIV PLYVGMATHEQADRLANAVRSRLLTPGGILATEHETGEQWDKPNGWAPLQWMAIQGFKLY GDDHLGDEIARNWLKTVNLFYQEHHKLIEKYHIADGMPREGGGGEYPLQDGFGWTNGVVR RLIGLYGEP >gi|283548475|gb|GG730302.1| GENE 198 187100 - 188689 867 529 aa, chain - ## HITS:1 COG:no KEGG:CKO_04959 NR:ns ## KEGG: CKO_04959 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 528 1 528 529 759 72.0 0 MTNSALQATCTPFERCLTIIRQASVEILLLLGVHVAEGKEPRWFLEQLDQARLNLGGWGA VARRLQMNDAQLSQFTLRLRHLQQSVPQYENGQDVSENQLISALRFVASLEQLRQQQPIL KYQTELERVEPDAQIRAQRQLRALELTLKSLIARVWPDQHPLNSFLKQHFGGERLRRWLK LGESRDALDGMMFSELALMVVDKKLFVRHFTQIFNDTSVLMLFVEPRITLRMFLDDCRLA RNGVIAQQPLTSVQLMLLDCQYRQITHPVQRAFEERRTRVNPASYLASDEATVRQFWETA RQKDEQAGGDKQEIADSIDPPEKRAKRSAEEREQLISGMLWGAVGVMVLVISLGAFWLFT SPAPQASSGQSVAIVQEEPRRDAPSARESVTRMGITWDAFNMRAAIDRNDTRVTSLFLQG GMDWKLAWTEQAFSAGNAEVLRLLLRYPSQMNETKPCRQFMSTLSHAMANGASLTSLHKS YLQSFCSVPAVVARQQHDLEQAQLRARAEPSPENRKWQKIHAELYDAIN >gi|283548475|gb|GG730302.1| GENE 199 189033 - 189383 223 116 aa, chain + ## HITS:1 COG:STM3605 KEGG:ns NR:ns ## COG: STM3605 COG3772 # Protein_GI_number: 16766891 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Salmonella typhimurium LT2 # 1 115 1 113 118 128 57.0 3e-30 MPLRSTHFTPACVAFIQQWQGLSLEKYQDKNGVWVIGYGHEITADETFDTPITAMQAESL LLADLKRCEALIHEKRPQLKDRFQQEALIAWIFSVGITRFSTTEIWPGAISQPEMF >gi|283548475|gb|GG730302.1| GENE 200 189402 - 190004 418 200 aa, chain - ## HITS:1 COG:yhjB KEGG:ns NR:ns ## COG: yhjB COG2197 # Protein_GI_number: 16131392 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli K12 # 1 197 1 197 200 283 72.0 1e-76 MQLIMFDRQSIFIHGMNVSLQQHIPGVNVQGVSQADDLWQKLEDNPDALVMLDGDLNADF CRSLLQQIAQRYSAVKVLVTATNCRKRWLQEVTQLNVLAIVPRDANAETFTLALNTVAMG MMFIPRDCITATESSGQNIKSLSARQREILTMLAAGESNKQIGRLLNISTGTVKAHLESL YQRLEVKNRTQAAMMFNDAI >gi|283548475|gb|GG730302.1| GENE 201 190183 - 190362 92 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283835900|ref|ZP_06355641.1| ## NR: gi|283835900|ref|ZP_06355641.1| hypothetical protein CIT292_10301 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_10301 [Citrobacter youngae ATCC 29220] # 1 59 1 59 59 100 100.0 5e-20 MPDIKENLIFWRSNPLININFSKSIFLTKNKEPAVFDKYVTKRNIALNAYSANTKPVTG >gi|283548475|gb|GG730302.1| GENE 202 190378 - 191136 716 252 aa, chain - ## HITS:1 COG:RSc1730 KEGG:ns NR:ns ## COG: RSc1730 COG1028 # Protein_GI_number: 17546449 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Ralstonia solanacearum # 5 252 10 256 256 276 63.0 2e-74 MTQRIALVTGGGRGLGKNAALKLAGKGIGIILTWNSNEKEALQVVDEIRQLGGQAAALPL NVGDISTFPQFVTQVRETLQAQWQSDTFDYLLNNAGIGINAPYPAFTEAQFDQLLNIHFK GPFFLTQSLLPLINNGGRILNVSTGLARFALPGYSAYAAMKGAMEVLTRYQARELGERGI TANIIAPGAIETDFSGGNVRDNAQLNAYIASQTALGRVGLPDDIGDAIAALLSDELAWMT AQRIEVSGGMFL >gi|283548475|gb|GG730302.1| GENE 203 191255 - 192154 896 299 aa, chain + ## HITS:1 COG:STM3607 KEGG:ns NR:ns ## COG: STM3607 COG0583 # Protein_GI_number: 16766893 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 296 1 296 299 460 75.0 1e-129 MDKIHAMQLFTRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQ DGMIYYERAKDLLSNLDELDGLFHHDPASISGKLRVDMPVGVARNLVMPRLPGFLHQYPG LELELSSSDRLVDLIREGFDCVVRVGTLKDSGLIARPLGKLTQVNCASPKYLARFGYPES LEDLASHAVVHYSVNLGTRAQGFEVATGSGIQWVKTGGMLTVNSTETYHAACLAGLGIIQ VPRVGVREALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDYVD >gi|283548475|gb|GG730302.1| GENE 204 192202 - 193227 1179 341 aa, chain + ## HITS:1 COG:ECs4402 KEGG:ns NR:ns ## COG: ECs4402 COG1295 # Protein_GI_number: 15833656 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 341 1 336 337 579 84.0 1e-165 MTQEKEIKRPIQELEHAPIPKIETQEREKTETHGKTNQALQTALTFADNIQRQPIIAHLI RAAERFNDRMGNQFGAAITYFSFLSMIPILMVSFAAAGFILASHPTLLQDIFSKILLNVS DPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGINWMGNLREAIRAQSRDVWERTPQDQ EKIWVKYLRDFVSLIGLLVALIVTLSITSIAGSAQQMIISALYLDGIEWLKPAWRLIGLT ISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAALGFEVIKMIMTYTLPSLMQSPSGAA FGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGKTQ >gi|283548475|gb|GG730302.1| GENE 205 193577 - 194899 1609 440 aa, chain + ## HITS:1 COG:ECs4403 KEGG:ns NR:ns ## COG: ECs4403 COG0477 # Protein_GI_number: 15833657 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 440 1 440 440 658 95.0 0 MQATATTLDNEQEHIPVNSRNKVVVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPT AATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYETI GIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGT FLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFAKVAAAKKQVKIPLG TLLTKHVRVTILGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIG FGVMVPVAGLLADAFGRRKSMLIITTLIILFALFAFKPLLGSGNPALVFAFLLLGLSLMG LTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIAAWLQGNYGLAAVGTYLAS MAALTLIALLLTHETRHQSL >gi|283548475|gb|GG730302.1| GENE 206 194943 - 197003 1703 686 aa, chain - ## HITS:1 COG:ZyhjG KEGG:ns NR:ns ## COG: ZyhjG COG2982 # Protein_GI_number: 15804068 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in outer membrane biogenesis # Organism: Escherichia coli O157:H7 EDL933 # 1 686 6 691 691 1224 90.0 0 MTKAGKITASVTGIFLLLIVVFIIVIATFDWNRLKPTINQKVSTELNRPFAIRGDLGVVW ERQKQETGWRSWVPWPHVHAEDIILGNPPDIPDVTMVHLPRVEATLAPLALLTKTVWLPW IKLVKPDARLIRLSEKNNNWTFTLAGDENRDPNAPPSAWSFRLDNILFDQGRIAINDKAT RSELEILVDPLGKPLPFSEVTGAKNKASNARVEDYVFGLQAKGRYNGEPLSGSGKIGGML ALRGEGTPFPVQADFRSGNTRVAFTGTVNDPMNMGGVDLRLKFSGDSLGDLYDLTGVLLP DTPPFETDGRLVAKIDPEKSSVFDYRDFNGRIGDSDIHGTLTYTTGKPRPKLEGDVESRQ LRLADLGPLIGVDSGKGAEKAKQSEQRKGEKSVQPADKVLPYDRFETDKWNVMDADVRFK GRRIEHGSSLPISDLSTHIILKNADLRLQPLKFGLAGGSIVSRIHLEGDKKPMRGQADIQ ARRLKLKELMPDVELMQKTLGEMNGDAKFSGSGNSVAALLGNSNGNLKLLINDGLISRNL MEIVGLNLGNYLVGQIFGDDEVRVNCAAANLDIVNGVARPQIFAFDTENAVINVTGTASF ASEQLDLTIDPESKGIRIITLRSPLYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPA AALLALISPSEGEANQCRTILSQMKK >gi|283548475|gb|GG730302.1| GENE 207 197081 - 197848 635 255 aa, chain - ## HITS:1 COG:STM3611 KEGG:ns NR:ns ## COG: STM3611 COG2200 # Protein_GI_number: 16766897 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Salmonella typhimurium LT2 # 1 255 1 255 255 441 86.0 1e-124 MIKQVTQQLITPDASIESLQERRYWLQCERAYTYQPIYQTNGRLMAVELLTVVSHPDNRA QRIAPDRYFAEVAVRHRVDVVKEQLLQLQQKGAFFRANDLLASVNVDGPTLIAMRQDPEI LKIIECLPWLRFELVEHIRLPKGSSFASMCEFGPLWLDDFGTGMANFSALSEVSYDYIKV ARDLFVMLRQTPEGRNLFTLLLQLMNRYCRGVIVEGVETLEEWRDVQNSPAFAAQGYFLS RPVPLDTLEEVILSL >gi|283548475|gb|GG730302.1| GENE 208 198078 - 199007 1008 309 aa, chain + ## HITS:1 COG:STM3612 KEGG:ns NR:ns ## COG: STM3612 COG0524 # Protein_GI_number: 16766898 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 576 92.0 1e-164 MSRKIAVIGECMIELSQKGADVQRGFGGDTLNTSVYIARQVDAAALSVHYVTALGTDSFS QQMLDAWQSENVDTALTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLESEQSAA ICEELATFDYLYLSGISLAILSPASRDKLLSLLRECRANGGKVIFDNNYRPRLWSSKEET QQVYQQMLECTNIAFLTLDDEDALWGEKPVAEVIARTHAAGVQEVVVKRGADSCLVSIEG EAPIDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGDAADAAKRGHLTASTVIQHRGA IIPRDAMPQ >gi|283548475|gb|GG730302.1| GENE 209 199101 - 200552 1508 483 aa, chain - ## HITS:1 COG:STM3613 KEGG:ns NR:ns ## COG: STM3613 COG0612 # Protein_GI_number: 16766899 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Salmonella typhimurium LT2 # 1 483 15 495 495 827 88.0 0 MMATAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVRLLVNTGSLTESTQQ SGFSHAIPRIALTQSGGLDATQARSLWQQGFDPKRPMPPVIVSYDSTLYNLSLPNSRNDL LKESLSYLANISGNLSITPETVNHALGSEDMVATWPSDTKEGWWRYRLKGSTLLGHDPAD PLKTPVDALKIRSFYQKWYTPDAMTLIIVGNVDARSVAEQINKTFGELKGKRETPAPVPT LSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHIQQELT KNNAKDIGLGFDCRVLFLRAQCAINIESPNGKLNANLGTVARELAKVRDKGLPEDEFDAL VAQKNLELQKLFATYGRTDTDILISQRLRSLQNQVVDIAPEQYQRLRQSFLNSLNVEMLN QDLRQQLSQEMALILLQPKGEPEFNMKELQATWDSIMAPVTAAATPVETDESHSEVTDIP PVQ >gi|283548475|gb|GG730302.1| GENE 210 200817 - 202103 1405 428 aa, chain - ## HITS:1 COG:ECs4408 KEGG:ns NR:ns ## COG: ECs4408 COG1301 # Protein_GI_number: 15833662 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Escherichia coli O157:H7 # 1 428 1 428 428 708 94.0 0 MKTSIFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKLIKMVIAPVIFCTVVTG IAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAKAVAIY AEQAKDQGIVGFLMDIIPASVIGAFASGNILQVLLFAVMFGFALHRLGSKGQMIFNVIES FSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQLGQLIICFYITCILFVVLVLGS IARATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEKLGCRKSVVGLVIPTGYSF NLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLVVLLLSSKGAAGVTGSGFIVLAATISA VGHLPVAGLALILGIDRFMSEARALTNLIGNGVATVVVAKWVKELDTKKLDDTLNNRAPD GKTHDLSS >gi|283548475|gb|GG730302.1| GENE 211 202261 - 204228 1614 655 aa, chain - ## HITS:1 COG:STM3615_3 KEGG:ns NR:ns ## COG: STM3615_3 COG2200 # Protein_GI_number: 16766901 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Salmonella typhimurium LT2 # 399 655 1 257 257 445 85.0 1e-124 MVAAVVMVFVFVFCTVLLFHLVQQNRYNTATQLESIARSVREPLSGTILKGDIPEAEAIL RSIRPAGVVSRADVVLPNQFQALRMSFIPERPVPVTVTRLFELPVQISLPIYSLERPANP QPLAYLVLQADSYRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINRLIVHPLRKIAREI NDIQQQDLIGYQLALPRLHQDDEIGMLVRSYNLNQQLIKRHSEEQSDHSMRFPVSELPNK SFLMGLLEQVVTRQQTTALMIVTCETLRDTAGVLTETQREILLLTLVEKLKSVLAPRMVL TQVSGYDFAIIAHGVKEPWHAITLGQQVLTIVNERLPIQGIQLRPNCNIGVAMFYGDLTA EQLYRRALSAVLTSRHKGKNQIQFFDPQQMEEAQQRLTQENDILTAMDNQQFALWMQPQV EMSSGKVLSAEALLRMQQPDGSWELPEGLIDRIESCGLMVTVGYWVLEETCRQLSAWQER GLMLPLSVNLSALQLMHPNMVSDLLELLTRYRIKPGTLILEVTESRHIDDPNAAVAILRP LRNAGVRIALDDFGMGYAGLRQLQHMKSLPVDVLKIDKMFVDGVPEDCSMISAIIQLAHS LNLQMIAEGVETQAQREWLSQAGVEVAQGFLFARPVPAKIFEERYLSQEGADYKS >gi|283548475|gb|GG730302.1| GENE 212 204494 - 204634 94 46 aa, chain - ## HITS:1 COG:no KEGG:EC55989_3988 NR:ns ## KEGG: EC55989_3988 # Name: ldrD # Def: toxic polypeptide, small # Organism: E.coli_55989 # Pathway: not_defined # 4 46 38 80 80 76 79.0 4e-13 MNSCHCNTGGYMTLAQLGVAFWHDLAAPIIAGIIASLIVSWLRNRK >gi|283548475|gb|GG730302.1| GENE 213 205027 - 206223 830 398 aa, chain + ## HITS:1 COG:FN1419 KEGG:ns NR:ns ## COG: FN1419 COG0626 # Protein_GI_number: 19704751 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Fusobacterium nucleatum # 8 395 7 394 395 488 59.0 1e-138 MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR LGNPTTDALEKKLAVLEKGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL SHSMPKFGINVSFVDAANPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA LLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD ITGGCMSPFNAWLTLRGVKTLGIRIERHCENALKIARFLEGHPSITHVYYPGLASHPQYE LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF >gi|283548475|gb|GG730302.1| GENE 214 206341 - 207639 1055 432 aa, chain + ## HITS:1 COG:STM3625 KEGG:ns NR:ns ## COG: STM3625 COG0814 # Protein_GI_number: 16766912 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 432 1 432 432 652 90.0 0 MQDNTLQLSNNTATAVPFSKKIPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFI VAFIIAYPATYIVQDIYLKTLSESETCNDYTDIISHYLGKNWGVFLGVIYFLMIIHGIFI YSLSVVFDSASYIKTFGLTDADLSQSIIYKVAIFAVLVAIASGGEKLLFKISGPMVVVKV GIIVIFGFAMVPHWNFANISAFPEASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRV ADRVLATRMAIRTHRISYITLIAVILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIP GQIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNVLSRVIDVEKINPLVLTLGICTF IVITLVIWVSFRVSVLVFFQLGSPLYGIVSCIIPFFLIYKATQLEKLRGLKTWLILLYGI LLCLSPLLKLIE >gi|283548475|gb|GG730302.1| GENE 215 207673 - 208830 890 385 aa, chain - ## HITS:1 COG:CAC3088_2 KEGG:ns NR:ns ## COG: CAC3088_2 COG3829 # Protein_GI_number: 15896339 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains # Organism: Clostridium acetobutylicum # 75 382 244 555 557 258 43.0 2e-68 MVEDVLKEFSCCDINIISMKVTPGRILIKSWCRQLQDISCVQSCLSQRADIINVAYLCEE ISELSTSEPERPRYFSDIICSSQSMRLLIEKAIKIADSKYTVLIRGDTGTGKELLARAIH NSGPRRFYPFIPVNCSALPELLMESEFFGYEKGAFSGADCKGKKGLFEMADKGTLFLDEF GEMSLGLQAKLLRVLQDGGIRRVGGAQIIPVNVRIIVATNANLEERVEQRLLRADLYYRI NVLSLTIPPLRERPQDISVLIRHFVQKYAKEFQRRIILDKACFDALHHHAWPGNVRELEN TIIRLMLMAESDVITLEELGMVNLPALEQVPTERPFKEQVLNAERQLIEQMMEENVSSRH IAKALGVSHTTVLNKIRSYQLESVS >gi|283548475|gb|GG730302.1| GENE 216 209052 - 210056 792 334 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 328 2 329 329 309 47 1e-82 MSTQKATLQQPLLQAIDLKKHYPVKKGLFAPERLVKALDGVSFTLERGKTLAVVGESGCG KSTLGRLLTMIEVPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQ ILEEPLLINSTLSKEQRREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDP DVVIADEPVSALDVSVRAQVLNLMMDLQQDLGLSYVFISHDLSVVEHIADEVMVMYLGRC VEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCR RRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR >gi|283548475|gb|GG730302.1| GENE 217 210053 - 211036 574 327 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 3 315 11 324 329 225 40 2e-57 MALLNVDKLSVHFGDVGSEFRAVDRISYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDFP GRVMAENLEFNGRDLKRISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGYQIMEAIKVHQ GGNKKTRVQRAIDLLTLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQD IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAE EPELNLLEGGRQSKCHYPLDDAGRPGL >gi|283548475|gb|GG730302.1| GENE 218 211047 - 211949 1357 300 aa, chain - ## HITS:1 COG:STM3628 KEGG:ns NR:ns ## COG: STM3628 COG1173 # Protein_GI_number: 16766915 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 300 1 300 300 471 92.0 1e-133 MSQVTENKVIAAPVPMTPMQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPAEQ FRDALLAPPAWQEGGTMAHLFGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLLMGVILG LIAGYFGGIIDNVIMRVVDIMLALPSLLLALVLVAVFGPSIGNAALALTFVALPHYVRLT RAAVLVEVNRDYVTASRVAGAGAMRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFL GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ >gi|283548475|gb|GG730302.1| GENE 219 211959 - 212978 342 339 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855436|ref|ZP_02478201.1| 30S ribosomal protein S21 [Haemophilus parasuis 29755] # 66 333 43 310 320 136 28 2e-30 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK PMWQQYLHYIWGVMHGDLGISLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDSNP LTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQR RDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK >gi|283548475|gb|GG730302.1| GENE 220 213145 - 214752 2084 535 aa, chain - ## HITS:1 COG:STM3630 KEGG:ns NR:ns ## COG: STM3630 COG0747 # Protein_GI_number: 16766917 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 535 1 535 535 1038 94.0 0 MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPI YNRLVEFKTGTTEVIPGLAEKWEISEDGKTYTFHLRQGVKWQDNKDFKPTRDLNADDVVF SFDRQKNAQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDDKTVQFVLTRPEAPFLADLAM DFASILSKEYADNMLKAGSPEKVDLNPIGTGPFQLQQYQKDSRILYKAFPGYWGTKPQID RLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLMEQAGLNVGYLSFNTE KKPFDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDPEKAK ALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMVQADWAKIGVQAKIVTYEWGEYLKR AKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDGSNYSRWCYKPFEDLIQPARATDDH NKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENVSVE >gi|283548475|gb|GG730302.1| GENE 221 215827 - 217521 1347 564 aa, chain - ## HITS:1 COG:STM3635 KEGG:ns NR:ns ## COG: STM3635 COG2194 # Protein_GI_number: 16766921 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Salmonella typhimurium LT2 # 1 564 1 563 563 1010 85.0 0 MRYIKAMPQQTLSFLLAIYIGLFLNCAVFYRRFSGYAHEFTVWKGLSAVVELAGTVLVTF FLLRLLSLFGRRIWRVLATFVVLCSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVG WHFIAWLVSVSIVPLVLIWSNRCRYTLIKQIRTPGLRWRSVAVVVLAGLMVWVPIRLLSM QQRSVERETGIDLPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDNKSLMNPAKKFTYV APKNLDDTWVVFIIGETTRWDHMGIFGYERNTTPRLAREKNLAAFRGYSCDTATKLSLRC MFVREGGAADNPQRTLKEQNVFSVLSQLGFKTDLYAMQSEMWFYSNTMAENISYREQIGA EPRNRGKNVDDMLLIPEMQQSLQQNDDGSKHLIILHTKGSHFNYTQRYTREYAQWKPECV NVDSGCSKAEMINSFDNSVTYVDHFITQVFDQLRDKKAIVFYAADHGESINEREHLHGTP RKMAPPEQFRVPMLVWMSDKYLEDPDHAKAFAHLKQEADMKVPRRHVELYDTILGCLGYT SPNGGINENNNWCRIPDAKKVAAQ >gi|283548475|gb|GG730302.1| GENE 222 217856 - 219058 1821 400 aa, chain - ## HITS:1 COG:yhjX KEGG:ns NR:ns ## COG: yhjX COG0477 # Protein_GI_number: 16131418 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 400 1 400 402 633 91.0 0 MKTSDYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSSKLDAPVSQVAFSFGLLSLGLA ISSSVAGKLQERFGVKRVTMASGILLGVGFFLTAHSDSLIMLWLSAGVLVGLADGAGYLL TLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDSQLLSTVGLEKTFMIWGAIVLVMIV FGAMLMKDAPNQEVKAKNGIVENDYSLAQSMRKPQYWMLAVMFLTACMSGLYVIGVAKDI AQSLAHMDVATAANAVTVISIANLSGRLVLGILSDKISRIRVITIGQVVSLVGMAGLLFA PLNDVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIA SLFGGFYVTFCVIFALLIISLALSTTIRQPQRSVYTEAHA >gi|283548475|gb|GG730302.1| GENE 223 219310 - 220011 478 233 aa, chain - ## HITS:1 COG:STM3641 KEGG:ns NR:ns ## COG: STM3641 COG5571 # Protein_GI_number: 16766927 # Func_class: N Cell motility # Function: Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion # Organism: Salmonella typhimurium LT2 # 14 233 15 234 234 342 78.0 3e-94 MIIRNSSGRQRLTLASVVVCALSINTAYGWQQEYIVDAMSGHTAERYTWDSDHQPRYNDI LEERIRSTQNVAGPVVNLADRSPMDTTSGMSMGWNFPLSRQVTTGPVAALHYDGSTTSTY NEFGDSATSITPTDPLWHASVSTLGWRVNSQFGDVRPWAQISYNQQFGENIWKAQSGLSR MTTAGQDGNWLDVTVGADMLLNSHMAAYAALSQAENSANSSDYMYTMGVSAKF >gi|283548475|gb|GG730302.1| GENE 224 220171 - 220740 363 189 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 1 181 1 181 185 144 38 6e-33 MQRCGWVSQDPLYIAYHDKEWGVPETDGQKLFEMICLEGQQAGLSWITVLKKRENYRRAF HHFDPEKVAAMTEEDVERLVLDAGIIRHRGKIQAIIGNARAFLTMAQNGESFSEFVWSFV DNQPQVTRAANLSDIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVISCI CYPGAQHDS >gi|283548475|gb|GG730302.1| GENE 225 220730 - 221170 548 146 aa, chain + ## HITS:1 COG:STM3643 KEGG:ns NR:ns ## COG: STM3643 COG0454 # Protein_GI_number: 16766929 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Salmonella typhimurium LT2 # 1 146 1 146 146 229 78.0 9e-61 MIRESKADDLPAILTLWMESTIHAHPFIEERYWRESESIVRDVYLPAAQTWVWEEEGELK GFASVIDDRFLGALFVAPAAIRRGIGTALVQHVQQRFSLLSLEVYQKNQSAVNFYHALGF RIEDGAWQEETHHPTWIMGWQADQTP >gi|283548475|gb|GG730302.1| GENE 226 221139 - 223445 1898 768 aa, chain - ## HITS:1 COG:STM3644 KEGG:ns NR:ns ## COG: STM3644 COG0243 # Protein_GI_number: 16766930 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 767 10 776 777 1396 87.0 0 MLTAAHWGPILVETDGETVFSSRGALPAAHPNSLQTVVRDQVHGKTRVRFPMVRKGFLAS PEDPQGVRGQDEFVRVSWDEALNLIHTQHKRIRESYGPASIFAGSYGWRSNGVLHKAATL LQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGSNEVYQQQTSWPVVLEYSEVVVLWSANP LNTLKIAWNASDEQGLAYFEALRNSGKRLICIDPMRSESVDFFGDKMEWIAPHMGTDVAL MLGIAHTLVENGWHDADFLARCTTGYDRFADYLLGKSDDIAKTAEWAADICGISAAKIRE LAAIFHQNTTMLMAGWGMQRQQYGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNP TRRAAVLASMQGSVKGGTDAVDKIPVARIVEALENPGGFYQHNGMDRHFPDIRMLWWAGG ANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQ HLVPMQQVVPPQGEARNDFDVFAELSERWEEGGYERFTEGKSELAWLETFYNMAGQRGAS QQVTLPPFTEFWQQNALIEMPENAASARFIRFADFRRDPQAHPLKTDSGKIEIYCARIAG YGYADCGGHPMWLEPDEWFGNAGPEQLQLLSAHPAHRLHSQLNYSALREQYAVADREPVT IHPQDANARGIVDGDTVRVWNSRGQILAGAVVTTGIKPGVICIHEGAWPDLDLAANGICK NGAVNVLTKDLPSSKLGNGCAGNTALVWLEKYSGPNLALTAFDPPASP >gi|283548475|gb|GG730302.1| GENE 227 223630 - 224292 864 220 aa, chain + ## HITS:1 COG:STM3645 KEGG:ns NR:ns ## COG: STM3645 COG2885 # Protein_GI_number: 16766931 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 303 92.0 2e-82 MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRG KGALIGAAAGAAVGGGIGYYMDVQEAKLREKMQGTGVSVTRSGDNIILNMPNNVTFDSNS SNLKPAGANTLTGVAMVLKEYDKTAVNVLGFTDSTGSQDLNMRLSQQRADSVASALITQG VAANRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSPVQ >gi|283548475|gb|GG730302.1| GENE 228 224328 - 224501 83 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086396|ref|ZP_06571488.1| ## NR: gi|291086396|ref|ZP_06571488.1| hypothetical protein CIT292_10337 [Citrobacter youngae ATCC 29220] 4Fe-4S ferredoxin, iron-sulfur binding protein [Citrobacter youngae ATCC 29220] # 15 57 1 43 43 77 100.0 4e-13 MLVLPVFAAFATSLMVARVDLLIADFPEFSENTLAGKSDEASNLPGGAALTGPACRT >gi|283548475|gb|GG730302.1| GENE 229 224434 - 225450 1381 338 aa, chain + ## HITS:1 COG:PA2259 KEGG:ns NR:ns ## COG: PA2259 COG1609 # Protein_GI_number: 15597455 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Pseudomonas aeruginosa # 6 336 11 336 340 279 45.0 7e-75 MSKSTRATISDVAKAAKTGKTSISRYLNGEKHLLSDALLARIEQAIADLDYRPSLMARGL KHGRTRLIGLIIADITNPYSVNVLSGIEAACRDKGFTPLVCNTNNEVDQELHYLDLLRSY QVEGIVVNAVGMREEGLNRLQQSALPMVLIDRKIPDFACDMVGLDNTQAATVATEHLVEQ GFEAILFLSEPLGMVNTRRERLSAFRATLARYPGVIAQNAEVPLADNAQLDDTLRQFHQQ HRGMRKAVISANGALTLQVARALKRIGLNWGSDIGLLGFDELEWAELAGVGITTLKQPTW QIGYTAVEQVVRRIDGGSAAIQEQVFSGELIVRGSTAR >gi|283548475|gb|GG730302.1| GENE 230 225566 - 226300 665 244 aa, chain + ## HITS:1 COG:no KEGG:CKO_05006 NR:ns ## KEGG: CKO_05006 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 244 6 249 249 373 79.0 1e-102 MVVTAAYGYEQVRAVGGQTAMLPIIAEAGADGVEIRREMLTDAELNTLPTMASAIEIFGL LACYSAPEPLFLEDGRLNPRLPALLAEAQALQALWLKVSLGHFSHTEQFDVLRTWLDTSG MELVVENDQTACGRLQPMRRFNEACQTQNLPISLTFDMGNWLWVGDSPEQAAQNLASTVG YIHVKAAVTHRDGYRAVPPDAADSRWLALLKTLPADVPRGIEFPLEGDDLTAVTRHYVEL LREE >gi|283548475|gb|GG730302.1| GENE 231 226304 - 227242 1183 312 aa, chain + ## HITS:1 COG:PA2261 KEGG:ns NR:ns ## COG: PA2261 COG0524 # Protein_GI_number: 15597457 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Pseudomonas aeruginosa # 5 310 4 307 316 326 57.0 3e-89 MKNSLDVVTIGEAMAMFVATQTGDLANVEQFIKRVAGAELNVATGLARLGLKVGWVSRVG NDSFGRFIIKSLEKEGIDAQGVTQDARYATGFQLKSKVENGTDPIVEYFRKGSAASHLSA EDYHEDYFASARHLHLSGVAAALSASSYELLAHTARAMKAQGKTLSFDPNLRPVLWKSEA EMVEKLNRLAFQADWVLPGLKEGMILTGQQTPEAIADFYLRHGVKAVIVKTGADGAWYKT ASGEQGCVAPVKVDNVVDTVGAGDGFAVGVISALLEGRTMQQAVTRGNKIGALAIQVQGD SEGLPTREQLGE >gi|283548475|gb|GG730302.1| GENE 232 227307 - 228587 1433 426 aa, chain + ## HITS:1 COG:PA2262 KEGG:ns NR:ns ## COG: PA2262 COG0477 # Protein_GI_number: 15597458 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 7 420 7 419 435 551 70.0 1e-157 MNSSTNAAKRWWYIMPIVFITYSLAYLDRANFSFASAAGINEDLGITKGISSLLGALFFL GYFFFQIPGAIYAERRSVRKLIFVCLILWGACASLTGIVSNIPMLAAIRFILGVVEAAVM PAMLIYISNWFTKSERSRANTFLILGNPVTVLWMSVVSGYLIQALGWREMFIIEGFPAII WAFCWWVLVKDKPSQVGWLSESEKAALQAQLEQEQQGIKAVRNYSEAFRSRNVILLCMQY FAWSIGVYGFVLWLPSIIRNGGANLGMVEVGWLSSVPYLAATAAMILVSWASDKLQNRKL FVWPLLLIAAFAFIGSWAVGADHFWISYTLLVIAGAAMYAPYGPFFAIIPEMLPRNVAGG AMALINSMGALGSFFGSWFVGYLNGATGSPSASYIFMGVALFASVWLTLIVKPANNSQIP VGARHA >gi|283548475|gb|GG730302.1| GENE 233 228610 - 229584 1023 324 aa, chain + ## HITS:1 COG:yiaE KEGG:ns NR:ns ## COG: yiaE COG1052 # Protein_GI_number: 16131424 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Escherichia coli K12 # 1 323 5 327 328 573 87.0 1e-163 MKPSIILYKALPDDLLHRLEEHFTVTQVPNLRPETVAQHAEAFASAEGLLGSSEAVNTAL LEKMPRLCATSTISVGYDNFDVDALNARKVLLMHTPTVLTETVADTVMALVLSTARRVVE VAERVKSGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGLALAQRAHFGFSMPILYNARRHH QEAEERFNARYCDLDMLLQESDFVCLILPLTDETHHLFSTAQFAKMKSSAIFINAGRGPV VDEKALIAALQNGEIHAAGLDVFEQEPLAADSPLLSLPNVVAVPHIGSATHETRYNMAAC AVDNLIDALQGRVEKNCVNPQVAR >gi|283548475|gb|GG730302.1| GENE 234 229643 - 230353 743 236 aa, chain - ## HITS:1 COG:no KEGG:SPC_3726 NR:ns ## KEGG: SPC_3726 # Name: yiaF # Def: hypothetical protein # Organism: S.enterica_Paratyphi_C # Pathway: not_defined # 1 236 7 242 242 392 92.0 1e-108 MATGKSCSRWFAPVLALLMVVGLSGCFDKEGDQRKAFIDFLQNTAMRSGERLPTLTADQK KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQREPLRQANGALGV LGQQLQNAKLQADAAHGALKQGDDLKPVFDQVYNKVVTVPAEALQPLIPAAQIFTQQLVQ VGDFVAQQDTQVSFVANGIQFPTSQQASQYNTLIGPLAAQHQAFTQAWTAAVNAAQ >gi|283548475|gb|GG730302.1| GENE 235 230734 - 231024 347 96 aa, chain + ## HITS:1 COG:STM3648 KEGG:ns NR:ns ## COG: STM3648 COG2944 # Protein_GI_number: 16766934 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 96 1 96 96 140 83.0 5e-34 MEYKDPMFELLSSLEQIVFKDVSQTVTLTQKTNPFTEFEQLRRGTGLKTDDFARVMGVTV AMVHEWESKRVKPSSTELKLMRLIQADPRLSKQLMD >gi|283548475|gb|GG730302.1| GENE 236 231305 - 231517 336 70 aa, chain + ## HITS:1 COG:ECs4441 KEGG:ns NR:ns ## COG: ECs4441 COG1278 # Protein_GI_number: 15833695 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Escherichia coli O157:H7 # 1 70 1 70 70 122 100.0 1e-28 MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAK GPAAGNVTSL >gi|283548475|gb|GG730302.1| GENE 237 231704 - 232243 584 179 aa, chain + ## HITS:1 COG:no KEGG:SPAB_04537 NR:ns ## KEGG: SPAB_04537 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 179 1 179 179 273 76.0 3e-72 MSKSSLLLFLGLLTTGSAFAATPEATFLAEHGLSGKSVEQIVETIDQSPQSRPLPYSASV TSTALKLSSGDRVYTLPLGDKFYLSFAPYEWQTHPCFNHSLSGCQGEMPEKTFNVKVTDS KGDVVVQKAMKSGRNGFVGVWLPRNMEGTIAVSYNGKSAEYPIKTMEDSQTCLTKLQLR >gi|283548475|gb|GG730302.1| GENE 238 232357 - 234426 2062 689 aa, chain - ## HITS:1 COG:ECs4442 KEGG:ns NR:ns ## COG: ECs4442 COG0751 # Protein_GI_number: 15833696 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, beta subunit # Organism: Escherichia coli O157:H7 # 1 689 1 689 689 1173 86.0 0 MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGIAHGNVEWFATPRRLALKVAN LAQAQPDREVEKRGPAIAQAFDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRA HVKGESAETLLPNMIATSLAKLPIPKLMRWGASDVHFVRPVHTVTLLLGDKVIPATILGI QSDRVIRGHRFMGEPEFTIDSADQYPEILRERGKVIADYAERKAKIKADAEEAARKIGGN ADLSESLLEEVTSLVEWPVVLTAKFEDKFLAVPSEALVHTMKGDQKYFPVYANDGKLLPN FIFVANIESKDPQQIISGNEKVVRPRLADAEFFFYTDRKKRLEDHLPRLQTVLFQQQLGT LRDKTDRIQALAGWIAEQIGADVNHATRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHD GEAEDVAVALNEQYQPRFAGDDLPSNPVACAVAIADKMDTLAGIFGIGQHPKGDKDPFAL RRAALGVLRIIVEKNLPLNLTTLILKASRLYGDKLTNDNVLDDVETFMLNRFRAWYQDMG YSIDVILSVLELRPTEPVDFDARVKAVTHFRSLPDAASLAAANKRVSNILSKRVDVLNDE VHPALLTEPTEQVLAFKMAVVRDRIKPLCQHFLYQEALTELASLRQPVDDFFENVMVNAE NQDVRINRLTLLSKLRALFLEVADISLLQ >gi|283548475|gb|GG730302.1| GENE 239 234436 - 235347 1245 303 aa, chain - ## HITS:1 COG:STM3656 KEGG:ns NR:ns ## COG: STM3656 COG0752 # Protein_GI_number: 16766941 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase, alpha subunit # Organism: Salmonella typhimurium LT2 # 1 303 1 303 303 634 100.0 0 MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQ PSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKELGMDPTIHDIRFVEDN WENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSV YDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLALENPL PLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASREALGFPMCN KDK >gi|283548475|gb|GG730302.1| GENE 240 235443 - 235748 285 101 aa, chain - ## HITS:1 COG:no KEGG:SARI_03980 NR:ns ## KEGG: SARI_03980 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 2 101 3 100 100 146 73.0 2e-34 MMKYFFPALATLLLVACADTQPPAPAQKAQKVKVSAARSLDMESLCKNEAAELYNTGAQK IDISGLEQFQGSYEMRGSTFRKESFVCSFDADGQFLHLSMR >gi|283548475|gb|GG730302.1| GENE 241 235923 - 236918 1118 331 aa, chain + ## HITS:1 COG:STM3658 KEGG:ns NR:ns ## COG: STM3658 COG3274 # Protein_GI_number: 16766943 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 331 1 331 331 538 84.0 1e-153 MQPKILWIDNLRGIACLMVVMIHTTTWYITNAQSVSPLNWDLANVLNSLSRVSVPLFFMI SGYLFFGERSASPRHFLRIALCIVFYSSVSLAYILLFTSINAELSLKNLLQKPVFYHLWF FFAIAVIYLVSPLIQVKKISGKMLLALMVVIGVIANPNTVSQKIGGFEWLPVNLYISGDT FYYILYGMLGRAIGMMDTQKRSLTWLCAALYIAAVFVISRGTLHELRWRGNFADTWYLYC GPAVFICAASLLTLVKNTLSTRTLPVLGFISRHSLGIYGFHAPIIHALRTNGIELKAWPP LDMLWIFSATLAGSLLLSMLLQRIDTRRLVS >gi|283548475|gb|GG730302.1| GENE 242 236915 - 237280 212 121 aa, chain - ## HITS:1 COG:yiaB KEGG:ns NR:ns ## COG: yiaB COG4682 # Protein_GI_number: 16131434 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 111 5 115 117 127 59.0 5e-30 MKTTRLLPWILFFSGMLIYVTGLWWACPLLSGKGYFLGVLMTGMFVTYAYQRAENLDQND ERFASVCQMVALITVGLLLVGVWNAPLAPIEIGLYPAAFFVCLIGQVLLLRPRQNEQNGE L >gi|283548475|gb|GG730302.1| GENE 243 237446 - 238900 1400 484 aa, chain - ## HITS:1 COG:STM3660 KEGG:ns NR:ns ## COG: STM3660 COG1070 # Protein_GI_number: 16766945 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Salmonella typhimurium LT2 # 1 484 1 484 484 817 86.0 0 MYIGIDLGTSGVKAILLNEQGDVIASQTEKLTVSRPHPLWSEQDPEQWWLATDRAVKALA QQHSLSEVQALGIAGQMHGATLLDKQQKVLRPAILWNDGRCAEECVMLENQVPQSRAITG NLMMPGFTAPKLLWVQRHEPEVFSQIDKVLLPKDYLRLRMTGNFASDMSDAAGTMWLDVA KRDWSDVMLAACKLSRAHMPALYEGCEITGTVLPDVARSWGMREVAVVAGGGDNAAGAVG VGMMNAGQAMLSLGTSGVYFAVSDGFLSKPESAVHSFCHALPERWHLMSVMLSAASCLDW AAKLTGLASVPALIAAAQEANEEAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPAE LARAVLEGVGFALADGMDVVHACGVQPASITLIGGGARSEYWRQMLSDISGLQLDYRTGG DVGPALGAARLAQIAMNPQKPLSDILPQLTLEQAHYPDAARHARYQQRRQTFRRIYQQLQ PLMS >gi|283548475|gb|GG730302.1| GENE 244 238971 - 240293 1611 440 aa, chain - ## HITS:1 COG:STM3661 KEGG:ns NR:ns ## COG: STM3661 COG2115 # Protein_GI_number: 16766946 # Func_class: G Carbohydrate transport and metabolism # Function: Xylose isomerase # Organism: Salmonella typhimurium LT2 # 1 440 1 440 440 868 94.0 0 MQAYFDQLDRVRFEGTKSTNPLAFRHYNPDEIVLGKRMEDHLRFAACYWHTFCWNGADMF GMGAFDRPWQQPGEALALAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYKNNFA QMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMDATHKL GGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFQGTLLIEPKPQEPTK HQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRG DAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAM DTMALSLKIAARMIEDGGLDQRVAKRYAGWNGELGQQILKGQMTLTEIAQYAEQHNLAPV HQSGHQEQLENLVNHYLFDK >gi|283548475|gb|GG730302.1| GENE 245 240653 - 241831 1090 392 aa, chain + ## HITS:1 COG:xylR_1 KEGG:ns NR:ns ## COG: xylR_1 COG1609 # Protein_GI_number: 16131440 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 265 1 265 265 507 92.0 1e-143 MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDNIKDWLGDGV IADYDDDDIAQLLADVDVPIIGVGGSYHLEQDYPPVHYIATDNHALVESAFLHLKEKGIN RFAFYGLPSSSGKRWAAEREYAFCQLVAKEKYRGVVYQGLETAPENWQHAQNRLADWLQT LPPQTGIIAVTDARARHLLQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGAR QMGYQAAKLLHRLLANEELPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHFIRNHACK GIKVEQVLDSVGISRSNLEKRFKEEVGETIHAVIHAEKLEKARSLLISTTLSITEISQMC GYPSLQYFYSVFKKEYDTTPKEYRDVNSEVLL >gi|283548475|gb|GG730302.1| GENE 246 241907 - 242479 468 190 aa, chain - ## HITS:1 COG:STM3663 KEGG:ns NR:ns ## COG: STM3663 COG2992 # Protein_GI_number: 16766948 # Func_class: R General function prediction only # Function: Uncharacterized FlgJ-related protein # Organism: Salmonella typhimurium LT2 # 1 190 85 274 274 331 93.0 4e-91 MPYITSQNAAITADRNWLISKQYQNRWSPTERTRMKDIAKRYKVSWSGNTRKIPWNTLLE RVDIIPTSMVATMAAAESGWGTSKLARSNNNLFGMKCAKGRCNNAPGKVKGYSQFESVKE SVNAYVINLNTHPAYSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGQSYNNYLFAMYQ DNQRLIAAHM >gi|283548475|gb|GG730302.1| GENE 247 243048 - 245078 1893 676 aa, chain + ## HITS:1 COG:ECs4454 KEGG:ns NR:ns ## COG: ECs4454 COG0366 # Protein_GI_number: 15833708 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Escherichia coli O157:H7 # 1 675 1 675 676 1206 86.0 0 MKLAAVALALMPGIAIAASWTSQGLPAFEAEGTGKFVSHAALTKGTRPLILNFDQQCWQP ADAIKLNQMLSLKPCEGAPPQWRLFKDGDYTLEVDTRSGTPTLMLSVKSAADPVSPQIRQ CPKWDGSPLTLDVSQTFPEGAVVRDYYSNQTATVKNGSITLQPAATSNGLLLLERAETDA PAAFDWHNATVYFVLTDRFVNGDPGNDHSYGRRNDGMQEIGTFHGGDLRGLASKLDYLQQ LGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGNEADLRALVDGA HQRGIRVLFDVVMNHTGYATLADMQEYQFGALYLSGDELKNTLGERWTDWKPAAGQSWHS FNDYINFSDKAGWEKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDLKTESITPSGLPNF YQHKPDTHAKAIAGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTQASAA LAEWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAN MAPTWQQMAEKLQNFNVLSYLSSHDTRLFREGGGNAAELLLLAPGAVQLFYGDESARPFG PTGSDPLQGTRSQMNWQDVTGNSAASVAHWQRISQFRARHPAIGAGKQTTLTLKQGYGLI REHGDDKVMVVWAGQP >gi|283548475|gb|GG730302.1| GENE 248 245213 - 246505 1218 430 aa, chain + ## HITS:1 COG:ECs4455 KEGG:ns NR:ns ## COG: ECs4455 COG3977 # Protein_GI_number: 15833709 # Func_class: E Amino acid transport and metabolism # Function: Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase # Organism: Escherichia coli O157:H7 # 15 429 1 415 417 819 93.0 0 MVSHFTTQFDRPPAMTFSLFGDKFTRHSGITRLMEDLNDGLRTPGAIMLGGGNPAQIPEM QDYFQSLLADMLENGKVTDALCNYDGPQGKTELLAELATLLREKLGWDIEPQNIALTNGS QSAFFYLFNLFAGRSADGTTRKVLFPLAPEYIGYADSGLEEELFISARPNIELLPEGQFK YHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHGIPLVIDNAYGVPFP GIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGIISLAPGGMGP AMMCEMIKRNDLLRLSETVIKPFYFQRVQETIAIIRRYLSEDRCLIHKPEGAIFLWLWFK DLPITTELLYQRLKARGVLMVPGDYFFPGLDKPWPHTHQCMRMNYVPEPEKIEAGVKILA EEIERAWLEG >gi|283548475|gb|GG730302.1| GENE 249 246541 - 247014 297 157 aa, chain - ## HITS:1 COG:ECs4456 KEGG:ns NR:ns ## COG: ECs4456 COG1142 # Protein_GI_number: 15833710 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 2 # Organism: Escherichia coli O157:H7 # 1 157 1 157 157 201 75.0 4e-52 MNLFIMADAAKCIGCRTCEVACVVAHQENQDCASVSSGAFIPRIRVMKDYAFTTAVACHQ CEDAPCANVCPTHAIRRERGHIFVEQAQCIGCKSCMVACPFGAMNVVARTSRAQAIKCDL CWHCETGPACVEACPTSALQCIDAVSIQRQRLRSQPL >gi|283548475|gb|GG730302.1| GENE 250 247132 - 247947 861 271 aa, chain - ## HITS:1 COG:yiaJ KEGG:ns NR:ns ## COG: yiaJ COG1414 # Protein_GI_number: 16131445 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 271 6 276 282 513 94.0 1e-145 MGTKESEMTQDKERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQG LQSCGYVTPAPAAGSYRLTTKFIAVGQKALSSLNIIHVAAPHLEALNIATGETINFSSRE DDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHADYVASYWESHQDLIQP LTRNTITGLPAMYDELAQIRESSMAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTS RLKQVGEKNLLKPLRETAQAISNELGFTVRD >gi|283548475|gb|GG730302.1| GENE 251 248164 - 249162 1205 332 aa, chain + ## HITS:1 COG:yiaK KEGG:ns NR:ns ## COG: yiaK COG2055 # Protein_GI_number: 16131446 # Func_class: C Energy production and conversion # Function: Malate/L-lactate dehydrogenases # Organism: Escherichia coli K12 # 1 332 1 332 332 639 92.0 0 MKVTFEQLKDAFNRVLLARGIAVETADACAEMFARTTESGVYSHGVNRFPRFIQQLDNGD IIPEAKPQRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELASDHGIGLVALRNANHWMRG GSYGWQAAEKGYIGICWTNSIAVMPPWGSKECRIGTNPLIVAIPSTPITMVDMSMSMFSY GMLEVNRLAGRELPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGLSIVLDMIATLL SDGSSVAEVTQDNSDEYGVSQIFIAIEVDKLIDGATRDAKLQRIMDFITTAERADENTPV RLPGHEFTKLLEENRRNGITVDDSVWAKIQAL >gi|283548475|gb|GG730302.1| GENE 252 249174 - 249638 388 154 aa, chain + ## HITS:1 COG:STM3669 KEGG:ns NR:ns ## COG: STM3669 COG2731 # Protein_GI_number: 16766954 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Salmonella typhimurium LT2 # 1 154 1 154 154 286 87.0 9e-78 MIFGHISQPNPCRLPAAIEKALDFLRTTDFQTLEPGVVEIDGKNIFAQIIDLTTRDVAEN RPEVHRRYLDIQFLAWGEEKIGIAIDTGNNEISESLLAQRDIIFYRNSEHESFVEMIPGS YAIFFPQDVHRPGCHKTVATPIRKIVVKVAISVL >gi|283548475|gb|GG730302.1| GENE 253 249651 - 250583 776 310 aa, chain + ## HITS:1 COG:no KEGG:CKO_05035 NR:ns ## KEGG: CKO_05035 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 309 1 309 309 555 85.0 1e-157 MNLDNTGYIIGAYPCAPSFHQKSEEEEKEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLL RHTPGEWQIVVTAIMETMRRRGINSGFGLASSDEEQRQACVAYYRHLHQKITHINAASAG KVIALELHAAPLASNPNVAQATDAFARSLKEITRWEWSCDLVLEHCDAMTGLAPRKGFLP LENVLDAIAGYDISVCINWARSAIEGQDIALPVAHAQQAKQAGKLGALMFSGTTLTGEYG EWQDLHAPFAPFCPQSLMTTDHARELFACAGSDPLQFAGIKLLEINANADVNHRVAILRD GIAALNKAKL >gi|283548475|gb|GG730302.1| GENE 254 250615 - 251934 1631 439 aa, chain + ## HITS:1 COG:YPO2535 KEGG:ns NR:ns ## COG: YPO2535 COG0477 # Protein_GI_number: 16122753 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Yersinia pestis # 12 423 10 422 443 476 60.0 1e-134 MNMTSRPTLKDIPRQRWLRIIPPILIACIISYMDRVNIAFAMPGGMDEELGISATMAGLA GGIFFIGYLFLQVPGGKIAVHGSGKKFIGWSLVAWAVISVLTGLITNQYQLLILRFLLGV AEGGMLPVVLTMISNWFPDAERGRANAIVIMFVPIAGIITAPLSGWIITVLDWRWLFIIE GLLSVVVLVLWAYTVYDRPQEARWISEAEKNYLVETLAAEQKAIAGTEVKNASLGAVLSD KTMWQLIALNFFYQTGIYGYTLWLPTILKELTHSSMGQVGMLAILPYVGAIAGMFLFSSL SDRTGKRKLFVCLPLIGFALCMFLSVALKNNIWLAYAALVGCGFFLQSAAGVFWTIPARL FSAEMAGGARGVINALGNLGGFCGPYAVGVLITLYSKDAGVYCLAVSLALAALMALLLPA KCDAGATPLKTLNPHKRTA >gi|283548475|gb|GG730302.1| GENE 255 252032 - 253534 1344 500 aa, chain + ## HITS:1 COG:STM3674 KEGG:ns NR:ns ## COG: STM3674 COG1070 # Protein_GI_number: 16766959 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Salmonella typhimurium LT2 # 7 499 4 496 498 877 84.0 0 MSEKETFWLGIDCGGTYLKVGLYDAKGHEHGINRQSLQTVSSLPGYAERDMRQLWQQCIA TITGLLKRTGVPGEQIKGVGISAQGKGLFLLDKQDKPLGNAILSSDRRAMEIVQRWQQDG IPEQLYPITRQTLWTGHPASLLRWVKENEPQRYAQIGCVMMGHDYLRWCLTGVKGCEESN ISESNLYNMTTGQYDPRLTQWLGISEVDNALPPIVGSAEICGEITAQTAAITGLAAGTPV VGGLFDVVSTALCAGLEDEHTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIV HEASPTSSGNLEWFTAQWGELSFAEINQAVASLPKAGSELFFLPFLYGSNAGLEMTSGFY GMQAIHTRAYLLQAIYEGVVFSHMTHLNRMRERFTKAHTLRVTGGPAHSDVWMQMLADVS GLRIELPQVEETGCFGAALAARVGTGVYHNFSDAQRSLQHPVRTLLPDAAAHTNYQRKYR QYQNLITALQGYHARIKEHK >gi|283548475|gb|GG730302.1| GENE 256 253534 - 254196 878 220 aa, chain + ## HITS:1 COG:STM3675 KEGG:ns NR:ns ## COG: STM3675 COG0269 # Protein_GI_number: 16766960 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 385 93.0 1e-107 MSRPLLQLALDHTNLQAAQRDVALLQESVDIVEAGTILCLTEGLSAVKALRAQCPNKIIV ADWKVADAGETLAQQAFDAGANWMTIICAAPLATVEKGHGVAQSCGGEIQMELFGNWTLD DARDWYRVGVRQAIYHRGRDAQASGQQWGEADLTRMKALSDIGLELSITGGITPADLPLF RDINVKAFIAGRALAGAQHPTQVAAEFHAQIDAIWGAEYA >gi|283548475|gb|GG730302.1| GENE 257 254189 - 255049 990 286 aa, chain + ## HITS:1 COG:sgbU KEGG:ns NR:ns ## COG: sgbU COG3623 # Protein_GI_number: 16131453 # Func_class: G Carbohydrate transport and metabolism # Function: Putative L-xylulose-5-phosphate 3-epimerase # Organism: Escherichia coli K12 # 1 286 12 297 297 539 91.0 1e-153 MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSPAQRASLVS AMLETGVAIPSMCLSAHRRFPFGSRDESVRARARDIMTKAIRLARDLGIRTIQLAGYDVY YEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTV YPDVGNLSAWGNDVTAELTLGIDRIAAIHLKDTLPVTETHPGQFRDVPFGEGCVDFVGIF KTLHKLNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEGGFPC >gi|283548475|gb|GG730302.1| GENE 258 255043 - 255738 883 231 aa, chain + ## HITS:1 COG:STM3677 KEGG:ns NR:ns ## COG: STM3677 COG0235 # Protein_GI_number: 16766962 # Func_class: G Carbohydrate transport and metabolism # Function: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases # Organism: Salmonella typhimurium LT2 # 1 231 1 231 231 447 93.0 1e-126 MLEQLKADVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYDVMTADDMVVVD IASGKVVEGSKKPSSDTPTHLALYRRYPEIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD YFYGSIPCTRLMTTEEINGEYEYQTGEVIVKTFEERDLNPMQVPAVLVHSHGPFAWGKDA ADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKHYLRKHGANAYYGQ >gi|283548475|gb|GG730302.1| GENE 259 255743 - 256543 525 266 aa, chain - ## HITS:1 COG:STM3678 KEGG:ns NR:ns ## COG: STM3678 COG2207 # Protein_GI_number: 16766963 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 265 6 271 271 372 68.0 1e-103 MSLPIKVQNGGLFISRGVGSHPARQLQSWEIIFVEKGTLTIREGHSVFCVNAGESLLLWP HRLHIGVGQFPPDLKFYWLHFELTTGNNVSSTEPLLAIPQHTRVSEPQYIISLFRQFLRE QENIHRSMALELILLLILQQISAAASAQPVDSPGNALAWKAQQIIHTQFHLPIGASTLAK ELHCNADYLGRVFRGAFRLTLTEALHRQRVRAAEKLLISDSLSLTEVAMRCGFNDVGYFR KIFRKHTSLTPAAWKRRYCKEHINSA >gi|283548475|gb|GG730302.1| GENE 260 256812 - 258212 1430 466 aa, chain + ## HITS:1 COG:ECs4458 KEGG:ns NR:ns ## COG: ECs4458 COG2211 # Protein_GI_number: 15833712 # Func_class: G Carbohydrate transport and metabolism # Function: Na+/melibiose symporter and related transporters # Organism: Escherichia coli O157:H7 # 1 466 1 466 466 767 90.0 0 MTSAPITTSELAQRAQDEKLSLREKIGYGLGDAGGTVITCLIMNFLTFFYTDVFGLTPAL VGTLFIALRVFDAISDPIMGVLADRTQSRWGRFRPWQLWVAIPIGIIGVLTFTVPDASMG VKIAWAFGTYLLLSVGYTAINVPYCALINTMTTRHNEVIACQSWRFVLCGMAGFLVSVGL PWMVDVLGQGNAAQGYQLGVGVLCAIAVVMFLCCFFWVRERVPLAMMGKFTLREHIGGLR KNDQLLLMLVMSFLLINVFNIRGGGYMYFITYVLEGSTAYTSLFFTMVTFASIIGSVLVS PLTRRVDTVKLYYYTNLVLAALAVMMWFLPTGPAYQTLWLAVILGNGIILGFTLPLHFSL MAFADDYGEWKTGVRSSGMNFAFNLFFIKLAWASSAGIISLLFIFVAYQPGAGNQTASSL HGITAMETLLPALFHLLLALSVRICKLNNPMMSRIATDLRQRHVQP >gi|283548475|gb|GG730302.1| GENE 261 258223 - 260178 1861 651 aa, chain + ## HITS:1 COG:STM3679 KEGG:ns NR:ns ## COG: STM3679 COG3533 # Protein_GI_number: 16766964 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 651 1 651 651 1253 89.0 0 MNILEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEADPSHAIENFRIAAGQQ SGEFYGMVFQDSDVAKWLEAVAWSLCQKPDPELEKTADEVIELVAAAQCEDGYLNTYFTV KAPNERWTNLAECHELYCAGHLIEAGVAFYQATGKRRLLEVVCRLADHIDSVFGLGENQL RGYPGHPEIELALMRLYEVTQQPRYMALVNYFVEQRGVQPHFYDEEYEKRGQTSYWHTYG PAWMVKDKPYSQAHQPISEQQTAIGHAVRFVYLMTGVAHLARLSQDEGKRQDCLRLWNNM VQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADV MERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPVRQRWFGCACCPPNIA RILTSIGHYIYTPRQDALYINLYVGNSMEVPVADGVLKLRISGNYPWHEQVTIAIESPQP VKHTLALRLPDWCSAPQVLLNGQPVAQDIRKGYLHISRTWQEGDTLSLTLPMPVRRVYGN PLVRHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFSVFEGKGLFSHKMLIQAEG VKQSTHNATQHALWHYDVSPSSRQTHTLTFIPWFSWANRGEGEMRIWVNEQ >gi|283548475|gb|GG730302.1| GENE 262 260279 - 261019 528 246 aa, chain - ## HITS:1 COG:ECs4460 KEGG:ns NR:ns ## COG: ECs4460 COG3713 # Protein_GI_number: 15833714 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein V # Organism: Escherichia coli O157:H7 # 1 246 1 246 246 364 72.0 1e-101 MLIKRNIVALFAFSFMASATAAEFSIGGGAVYNESPYRGYNDNIHAVPLISYESESFYFR QTTLGYIISKSESNEFSITASYMPLEFDPGDNDDRAMKQLDKRDATAMAGAAWYHHERWG SVKVSAAADVLDNSNGWVGEVSLFRQMPMGKLTLTPSVGVLYYDENFNEYYYGISGNESR RSGLSSYSPGDSWTPYVGLSAKYALTTNLTLLASANYSALPDDIKNSPMVDRDDSFTFIS GVSWRF >gi|283548475|gb|GG730302.1| GENE 263 261141 - 262091 763 316 aa, chain + ## HITS:1 COG:yiaU KEGG:ns NR:ns ## COG: yiaU COG0583 # Protein_GI_number: 16131456 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 316 1 318 324 531 80.0 1e-151 MNKLQLKHRELKIISVIAASENISHAATFLGIAQANVSKYLADFESKVGLKVFDRTTRQL TLTPFGRALLPYINDMLDRNEQLNSFIADYKHEKRGKVTVYAPTGIIAYLSQHVIAKIMD IGDISLVLKTYNLDRKAFYEGVEFPDDCDILLSYAHPKDESLVASFITKYAVIAFASKEY LNKHPISSPGELEHHSCILIDSMMIDDANIWRFSSADGKDIHDYRVTGNYICDNTQSALA LARNHLGIVFAPNESVQRDCRSEMLVPCFAEKHEWWLDLVAIFRKREYQPWRVQYILDAM LTEIRQQLTQRLQPPE >gi|283548475|gb|GG730302.1| GENE 264 262120 - 263256 1109 378 aa, chain - ## HITS:1 COG:ECs4462 KEGG:ns NR:ns ## COG: ECs4462 COG1566 # Protein_GI_number: 15833716 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli O157:H7 # 1 378 1 378 378 656 87.0 0 MDLLIVLTYVACAWSIFKIFKIPVNKWTVPTAALGGIFIVCGLILLMNYNHPYTFKAQKA VISIPVVPQVTGVVTEVTDKKNTLIKKGEVLFKLNPGRYQARVDRLKADIVTAQHKEQAL IAQLDEMKANTQRAKATRDKLAKDYQRYAQGSQAKVNPFSERDIDAARQNYLAQEASVKS SIAEQQQIQSQLDSLVLGENSQIASLKAQLAEAEFNLDQTVVRAPSDGYVTQVLMRPGTY AAALPMRPVMVFIPDQKRQIIAQFRQNSLLRLEPGDEAEVVFNALPGKVFSGKLAAISPA VPGGTYQSNGALQSLNSTPGSEGVIATIELNDNADVSALPDGIYAQVAVYSDHFEHVSIM RKVLLRMTSWVHYLYLDH >gi|283548475|gb|GG730302.1| GENE 265 263262 - 263585 253 107 aa, chain - ## HITS:1 COG:no KEGG:JW3559 NR:ns ## KEGG: JW3559 # Name: yiaW # Def: conserved inner membrane protein # Organism: E.coli_J # Pathway: not_defined # 1 107 1 107 107 182 88.0 3e-45 MFLDYFALGVLIFVFLIIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP FLWIWATLYRPERGWGMQSADPSLSQLQARVADLEKQLAEVKTSPAE >gi|283548475|gb|GG730302.1| GENE 266 263755 - 265293 1674 512 aa, chain - ## HITS:1 COG:STM3680 KEGG:ns NR:ns ## COG: STM3680 COG1012 # Protein_GI_number: 16766965 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 512 1 512 512 1056 98.0 0 MTNNPPSTRIYPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQLLCEVASSG KKDIDLALDAAHKVKDKWAQTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETS AADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWK MAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIA KVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFA FNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSVTQMGAQVSHGQLETILN YIDIGKKEGADVLTGGRRKQLDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFK TMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQS GIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF >gi|283548475|gb|GG730302.1| GENE 267 265386 - 266537 1305 383 aa, chain - ## HITS:1 COG:ECs4466 KEGG:ns NR:ns ## COG: ECs4466 COG1454 # Protein_GI_number: 15833720 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Escherichia coli O157:H7 # 1 383 1 383 383 653 91.0 0 MASSTFFIPSVNVIGADSLKDAMNTMAEYGFRRTLIVTDAMLTKLGMAGEIQKALQERDI FSVIYDGTHPNPTTSNVAAGLQMLKENQCDSVISLGGGSPHDCAKGIALVAANGGDIADY EGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEVRHIKMAIVDKHVTPLLSVNDSSLM VGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALKAVTMIAENLPVAVEDGSNAQAR EAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYDLPHGVCNAVLLPHVQVFNSKVAAARL RDCAAAMGVDVAGLSAEQGAEACIAAIRELAQKVNIPAGLRELNVKEEDFAVLATNALKD ACGFTNPIQATHDEIMAIYRAAM >gi|283548475|gb|GG730302.1| GENE 268 266723 - 268570 1791 615 aa, chain - ## HITS:1 COG:selB KEGG:ns NR:ns ## COG: selB COG3276 # Protein_GI_number: 16131461 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Selenocysteine-specific translation elongation factor # Organism: Escherichia coli K12 # 1 614 1 614 614 1075 87.0 0 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPG HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNPQITVALTKADRVDEE RINTVREEVHTALENYGFADAALFVTAASEGRGIEELRDHLLQLTSREHARDHSFRLAID RAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRVRSLHAQNQPTEHAHAGQRIALN IAGDAQKEELTRGDWLLSDAPPEAFTRVIVSLEHAAPLMQWQPLHIHHAASHVTGRISLL EGTLAELVFDTPLWLADNDRLVLRDISARTTLAGARIVTLNPPRRGKRKPEYLQWLSALE NAQSDGDALALHLSRGAVNIPDFAWARQLNGNGMRPLIEQHGFIQAGYSLLNAPVAARWQ RKVLDTLATYHEQHRDEPGPGRERLRRMALPTEDEALVLLLIEKMRESGAIHSHHGWLHL PDHKAGFSDEQQAIWQQAEPLFGDEPWWVRDLAKQTGTDEQMMRVALRQAAQQGIITAIV KDRYYRNDRIVAFANMIRELDQEKGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRG NDHLLRDALLFPEKQ >gi|283548475|gb|GG730302.1| GENE 269 268567 - 269958 1348 463 aa, chain - ## HITS:1 COG:STM3683 KEGG:ns NR:ns ## COG: STM3683 COG1921 # Protein_GI_number: 16766968 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 463 1 463 463 751 86.0 0 MTTDMRSLYSQLPAIDRLLRDSAFSALRESHGHTRVVDLLRHMLDETREAIRDTHALPAW CEDWAQEARVRLERESQSALRPVINLTGTVLHTNLGRALQAEEAIDAVVQAMRTPVTLEY SLDDAGRGHRDRALADLLCRLTGAEDACIVNNNAAAVLLMLAATANGKEVVVSRGELVEI GGAFRIPDVMCQAGCTLREVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKSVD EAELAAIGQELDVPVVADLGSGSLVDLSLYGLPQEPMPQQLIAAGVSLVSFSGDKLLGGP QAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALAAKLPTLRLLTRS QEAIHAQAQQLQARLAAHYGDEFALNVMPCLSQIGSGSLPVDRLPSAALTFTPHDGRGSR LDALAARWRALPVPIIGRIYDGRMWLDLRCLEDETRFMEMMLK >gi|283548475|gb|GG730302.1| GENE 270 270064 - 270672 691 202 aa, chain - ## HITS:1 COG:STM3684 KEGG:ns NR:ns ## COG: STM3684 COG0625 # Protein_GI_number: 16766969 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 1 202 1 202 202 362 91.0 1e-100 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADSGVARYNPLGKVPALVTDEGEYW FDSPIIAEYIELLDIAPAMLPREPLAALKVRQLEALADGIMDAGLVSVREQARPAAQQSE TELLRQREKITRSLDVLEGYLADGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPR LVKLVETLFQRESFARTEPPKA >gi|283548475|gb|GG730302.1| GENE 271 271053 - 275174 2353 1373 aa, chain + ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 1241 1 1248 1397 1682 67.0 0 MSGKPASRQGDMTKVGGPIVQGSAGVMIGAPTGVACSVCPGGMTIGEPVNPLLGAKVLPG EVDMSLPGPLAYVVSRSYSSYCTKTPSPVGVFGPGWKAPADIRLQIRDNGLILNDNGGRS IYFERLLPGEVGHSRTEGLFLVRGGAPKLNFHRLDKLWAILPEDIRCNPHIYMVANSPQG PWWFLGWPDRVPDVDETLPPPPPPYRVLTGLVDRFGRVLAFHREAAGELTGEITAVTDGA GRRFRLVLSTQAQRAENAGNVSSSEFPTTLPRTGYGADNGIRLAEVWLVHDPEYPEDLPA LPLVRYAYTPRGELAAVFDRSGTRVRSFAYALQHPGRIVAHCYAGRPESHYRYNEQGYVT EQVNSQGLSYRFAYEKAQVIITDSLGRREVLHLKGEGSLKRVVKHERKDGTVTFNKYDYQ GRLAAHTDAAGRVTEYRRGVVDGLVTASLTPDGKETRFGYVDQQLSTVIFPDGLRSSRKY DDKGCLTQETSRSGEVTQYFYDDPHSELPTALLDATGSRKQITWSRYDQLLTFADCSGYE TRYEYNRFGQTTAVHYEEGLSIYQRYDSRGRLVGRRDVQGHATEFEYNDAGDLTAVIHPD GCRSVTGYDARGRVVSMTEGGLTRRAEYDAAGRIIALVNENGATTTREYDPLDRLVQETG FDGRTTRYQYALTGLLARSEDAGLVTQWQYDEADRLTQRIVGGEPAEQLQYDKHGWLTSI SHLSEGHRVTVIYRHDSKGRTIREQQMVYNPETGELLWAHETKQTYSAQGLANRFTLDNL PPVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETQRRFGAYELASTWTSVGQLQSHHLN SLMFDRDYSYDETGHLVRISGPRQTREYSYSRAGRLTGVHTTSTNLDITIPYATDPASNR LPDPELYPDSPLKAWPENRITEDAYYVYRYDAFGRLIEKTDRIPKEVNRMYDERTHRYAY DNQHRLVHYIRTQYDKTQAEGRYIYDPLGRRICKQVWKREREHPDHDQMALSRRPHVTWY GWEGDRLTTIQTAKTRVQTVYQPGSYTPLLRIETDVAELEKTRHRSLAEILQQDGGEDGH SVAFPPELVQKLNVLETEIRRNQVSDNNREWLAGGGLTVEQMAAQLEEEYVPERKLHLYH CDHRGLPLALIDADNSVVWRAEYDEWGNLLNEDNPRNLQQLIRLPGQQYDDESELYYNRH RYYNPEQGRYITQDPIGLRGGWNPYTYPLNPVTGMDPLGLKVTFKGNEEQQKAMKEAYES VRKTKHGQEMIEKMELSDHDYIFRGPRKGMEHTCYDPSEYTFYIEKDSDHAACQYQGKDK ACKLTSTPLSVVIAHEMGHAMGENDDGPGHMNNVKKHENPVRKEMGIPPRMKY >gi|283548475|gb|GG730302.1| GENE 272 276365 - 276748 59 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283835972|ref|ZP_06355713.1| ## NR: gi|283835972|ref|ZP_06355713.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 127 1 127 127 247 100.0 2e-64 MIDRIYLGDRAVTGLEIDSRSSLIRIKINLTSRLPKNNSEWGFYNNEDIENGFLVFSGIS YLEISPSGIIPGDYIIDYNLTQNKDSGQFIIRTIGQPNEMYKGDKESLLMICFHDSWLEN KDKELVG >gi|283548475|gb|GG730302.1| GENE 273 276749 - 277531 -27 260 aa, chain + ## HITS:1 COG:rhsC KEGG:ns NR:ns ## COG: rhsC COG3209 # Protein_GI_number: 16128676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli K12 # 1 259 1136 1396 1397 410 71.0 1e-114 MYCKYRKLHLYRCYRLGLTLIRTDGRTGWRAEYDEWGNLLNEDNPQNLQQLIRLPGQQYD DESELYYNRHRYYNPEQGRYITQDPIGMKGGLNSYAYPLNPVESVDPLGSETLKCIKPLH SIGGIGEKSGPDIWGNPLYHQYLCVSNGKNGYICGGQDQRGELSNDGILGPGKASQDTRE GAGRCDSVESNNDCIENCLKDKFKGERPFYSVLPDWMFPIKFGLVKNCQDWSNDTLKTCQ IKCSGNNLERIIDFIFTGVA >gi|283548475|gb|GG730302.1| GENE 274 278147 - 278731 177 194 aa, chain + ## HITS:1 COG:no KEGG:ECB_00661 NR:ns ## KEGG: ECB_00661 # Name: ybfC # Def: hypothetical protein # Organism: E.coli_B_REL606 # Pathway: not_defined # 1 194 1 189 189 253 61.0 4e-66 MKRVILCLLTALINFDALASCETQPENQVCFTIFTKNSIASSFPVLNVKPVWKWYRTEDI GEYYWQTELGTCKNDKFIPNGARLLIVLGSLRLNENPPAEGSLQDLLDTAEKKAFFDDEI ANIHVRSPIRGAFVQKRSSDPAQLLAIFDNPSMVKYFKTKNSTYARMTAHLPEKNESYEC ITEIQYGVLRSEKK >gi|283548475|gb|GG730302.1| GENE 275 279163 - 280299 1125 378 aa, chain - ## HITS:1 COG:ECs4473 KEGG:ns NR:ns ## COG: ECs4473 COG1566 # Protein_GI_number: 15833727 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Escherichia coli O157:H7 # 1 378 1 378 378 671 89.0 0 MDLLIVLTYVAFAWAIFKIFRIPVNQWTLATAALGGVFIVAGLILLMNYNHPYTFTAQKA VISIPVTPQVTGIVSEVTDKNNQLIKKGEVLFKLDPVRYQARVDRLQADLVTATHNIDNL KAQLSEAVANTTRVSAERDRLYKDYQRYLKGSQAKVNPFSESDIDNARQNYLAQDALVKG SVAEQTQIQSQLDSMVNGEQSQVASLRAQLAEAKYNLEQTIVRAPSNGYATQILIRPGTY AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLEPGDEAEVVFNALPGQVFSGKLTSILPV VPGGSYQAQGALQSLTVVPGTDGVMATIELDPNADVDALPDGIYAQVAVYSDHFAHVSVM RKVLLRMTSWMHYLYLDH >gi|283548475|gb|GG730302.1| GENE 276 280302 - 280664 286 120 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B3900 NR:ns ## KEGG: SeAg_B3900 # Name: not_defined # Def: inner membrane protein YiaW # Organism: S.enterica_Agona # Pathway: not_defined # 1 120 1 120 120 226 94.0 3e-58 MFLNYFALGVLIFVFLVLFYGIIAIHDIPYNIAKKRNHPHADAIHTAGWVSLFTLHVIWP FLWIWATLYQPEKGWGMQSHITPTGKEPDPEIAVLAARIAQLEKKLDGEKKIDNSTFPEI >gi|283548475|gb|GG730302.1| GENE 277 281195 - 283108 2534 637 aa, chain + ## HITS:1 COG:mtlA_1 KEGG:ns NR:ns ## COG: mtlA_1 COG2213 # Protein_GI_number: 16131470 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannitol-specific IIBC component # Organism: Escherichia coli K12 # 1 493 1 493 493 894 95.0 0 MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLL PLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDNWVDG KIKSGFEMLVNNFSAGIIGMILAILAFLGIGPLVEGLSKILAAGVNFMVVHDMLPLASIF VEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAK QSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSI LAVLAMTPKGAYFANIAAICAAMAVSFVVSAILLKTSKVKEEDDIDAATRRMQDMKAESK GASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNL PPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNVNEEKVRD RLKDSFDEGDNNLFKLGAENIFLGRKATNKEEAIRFAGEQLVKGGYVEPEYVEAMLDREK LTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEH IQVITSLTNALDDESVIERLAHTTSVDEVLELLAGRK >gi|283548475|gb|GG730302.1| GENE 278 283247 - 284395 1502 382 aa, chain + ## HITS:1 COG:STM3686 KEGG:ns NR:ns ## COG: STM3686 COG0246 # Protein_GI_number: 16766971 # Func_class: G Carbohydrate transport and metabolism # Function: Mannitol-1-phosphate/altronate dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 382 1 382 382 707 95.0 0 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTV SGVNAVSSIGDDVVDLIAHVDLVTTAVGPVVLERIAPAIAKGLVKRKAQGISTPLNIIAC ENMVRGTTQLKGHVMNALADEDKAWVEEHVGFVDSAVDRIVPPSASATNDPLEVTVETFS EWIVDKTQFKGELPNIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLTGHQTIRDAIL DEKIRAVVKGAMEESGAVLIKRYGFDAAKHAAYIQKILGRFENPYLKDDVERVGRQPLRK LSAGDRLIKPLLGTLEYGLPHANLVTGIAAAMHYRSEEDPQAQELAALIDEKGPQAALAQ VSGLDANSDVVAEAVNAYNATK >gi|283548475|gb|GG730302.1| GENE 279 284392 - 284982 471 196 aa, chain + ## HITS:1 COG:STM3687 KEGG:ns NR:ns ## COG: STM3687 COG3722 # Protein_GI_number: 16766972 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 196 1 196 196 353 94.0 2e-97 MIENVAQVSLRPNDRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNI LVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVLSRPEYEDAELLMALREE LNHDGNEYAFTDDEILGPFGELHCVTALPPPPQFDTSDSGLHAMQIQRYQQMVRSTMVLS LTELISKISLKKAFQK >gi|283548475|gb|GG730302.1| GENE 280 284995 - 285201 213 68 aa, chain - ## HITS:1 COG:no KEGG:EFER_3593 NR:ns ## KEGG: EFER_3593 # Name: not_defined # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 68 26 93 94 106 79.0 2e-22 MAKIGDNVSVLIDKTVDFMASSQAFREYLNKTPPRNVVPSEIPQENAQLYLQRLAYYRQL YRPRQEEK >gi|283548475|gb|GG730302.1| GENE 281 285494 - 285856 449 120 aa, chain + ## HITS:1 COG:no KEGG:ECED1_4285 NR:ns ## KEGG: ECED1_4285 # Name: yibL # Def: hypothetical protein # Organism: E.coli_ED1a # Pathway: not_defined # 1 120 1 120 120 155 90.0 7e-37 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKETLEAEIARLRAVHGQKL SKEAQKLAKLPFHRAITKKEQADMGKLKKSVRGLIVVHPMTELGREMGLKEMTGFAKSEF >gi|283548475|gb|GG730302.1| GENE 282 286300 - 286941 390 213 aa, chain + ## HITS:1 COG:no KEGG:SeSA_A3891 NR:ns ## KEGG: SeSA_A3891 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 213 1 227 227 315 69.0 1e-84 MYTNGKCIPPLILGFTFLLSGCDYLADKHLIEELKKQQKEQQEKINALEKQQVAIVGATQ KVANVIARIERKQRLFEYTELDPSQTRYFIINNGNIGLAGRILSIEPIADGSVIHLDLVN LVSVPVSNIGFHMTWGGKKPADAKDLPRWQQLLFSTQMDSTLQLLPGKWTNVDLTLKGVS PNNLKYLRVGMNMKDILFEDPRPTKEKKKETKK >gi|283548475|gb|GG730302.1| GENE 283 286989 - 290858 3334 1289 aa, chain + ## HITS:1 COG:STM3691 KEGG:ns NR:ns ## COG: STM3691 COG5295 # Protein_GI_number: 16766976 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; W Extracellular structures # Function: Autotransporter adhesin # Organism: Salmonella typhimurium LT2 # 80 1289 179 1461 1461 796 60.0 0 MNRIFKVIWNAATGTCTVTSETAKSRAKKSGRKKLIASALIGVSGLLASTGALANAGNDT GTGVTPDGTKAGTGWIAIGTGAVANTFTDASGASSAMGYGASAMGRWSTAIGSYSDSSGD SSLALGVKAASAGDRAIAMGASSSASGYYSMAMGVRANASGKTSVALGNNAAASGDDSAA LGNGAKATGTNSVAIGAGSTAQEDNSVSVGNSTTQRKITYVANGAINASSSDAVTGAQIY AVSASIANRLGGGSTVNSADGTINAPTYTVGTGTYNNVGSALSAIDSSITDISSSVTELT GDALQWSDADGAFSAGHGLDDTNKITHLAEGTLTADSTDAVNGSQLYETNQNVTQNTTDI ATNTTNIATNTTNIATNTTDIATNTTNIAANTTDIATNTTNIATNTTDIADLSSSVSNIS TTVTGLTDDALLWDSAAGAFSAVHGANTASKITNVAAGTLSADSSDAVNGSQLYETNQNV TQNTTDIATNTTNIATNTTNIADLSTSISDISTTITGLTDDALMWDTSADAYSASHGTNA TSKIANVAAGTLSADSTDAVNGSQLYETNQNVEQNTVNIATNTTNIADLSTSISDISTTI TGLSDDALLWDTSADAYSASHGTNATSKITNVAAGALSADSTDAVNGSQLYETNQNVAQN TTDIAEINASITNLGSDALKWDETTGTFSASHGSSATNKITNVAAGALSADSTDAVNGAQ LYETNTLIAQNSDIISNLAGDTSETYITENGAGVRYVRTNDTGLTEDDAHASGVGATAIG YNAAASGAGSLALGQNSSSSVDTAIALGSGSTSNRAISAGTQTTSVTSEGVVIGYDTTDR TLLGALSLGTDGESYRQITNVADGSEAQDAVTVRQLQNAISAVSTTPTKYFHVNSDEEDA LAVGLNSIAVGATTVVNGDRGVGIGYGASVSQTASNGIAVGTNAQANHADSVALGSDSQT TVGAQSSYTAYNMDTQQSSIGEVSVGSASGQRQITNVAAGTQDTDAVNVAQLKVTDSRVA ANTESITNLNTQVSNLDTRVTNIESSVGDIVTTGNTKYFKTSSTGADANAQGTDSVAIGS GSISSAENSVALGTNSVADEADTVSVGSSTQQRRITNVAAGVNNTDAVNVAQLKASEAGS VRYETNADGSVNYSVLNLGDSSGGTTRISNVSAAVNDTDAVNYAQLKRSVEEANTYTDQK MGEMNSKIKGVEDKMSGGIASAMAMAGLPQAYAPGANMTSIAGGTFNGESAVAIGVSMVS ESGGWVYKLQGTSNSQGDYSAAIGAGFQW >gi|283548475|gb|GG730302.1| GENE 284 291155 - 292810 2226 551 aa, chain + ## HITS:1 COG:STM3692 KEGG:ns NR:ns ## COG: STM3692 COG1620 # Protein_GI_number: 16766977 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Salmonella typhimurium LT2 # 1 551 1 551 551 947 97.0 0 MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVVIALAVALLFYKM PVDHALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLI VGFSFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIVNTAPVAFGAMGIPILVA GQVTGLDSFEIGQMVGRQLPFLTIIVLFWIMAIMDGWRGVKETWPAVMVAGGSFAIAQYL SSNFIGPELPDIISSLVSLVCLTLFLKRWQPVRIFRFGDMGASQVDQTLARTHYTPGQVV RAWSPFLFLTATVTLWSVPPFKALFAPGGAMYHWVVNIPVPFLDKLVARMPPVVHEATAY AAVYKFDWFSATGTAILFAALLSIVWLKMKPSAALQTFGNTLKDLALPIYSIGMVLAFAF ISNYSGLSSTLALALAHTGSAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGV SDVLMVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCMVGVITT LQAYVLTWMIP >gi|283548475|gb|GG730302.1| GENE 285 292807 - 293583 697 258 aa, chain + ## HITS:1 COG:STM3693 KEGG:ns NR:ns ## COG: STM3693 COG2186 # Protein_GI_number: 16766978 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 258 1 258 258 436 90.0 1e-122 MIVMPRRLSDEVASRVRALIEEQQLEAGMKLPAERQLAVQLGVSRNSLREALAKLVSEGV LISRRGGGTFVRWQHEAWSEQNIVQPLKSLMADDPDYSFDILEARHAIEASTAWHAAMRA TSADKEKIRLCFEATQSEDPDLASQADVRFHLAIAEASHNVVLLQTMRGFFDVLQSSVKQ SRQRMYLVPPVFSQLTEQHQAVLDAIVAGDADGARKAMMAHLSFVHTTIKQFDEDQARQA RITRLPGDPGENSRENNT >gi|283548475|gb|GG730302.1| GENE 286 293580 - 294806 1525 408 aa, chain + ## HITS:1 COG:STM3694 KEGG:ns NR:ns ## COG: STM3694 COG1304 # Protein_GI_number: 16766979 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 396 1 396 396 735 94.0 0 MIISAASDYRAAAQRILPPFLFHYIDGGAYAERTLRRNVEDLSEVALRQRVLKNMSDLSL ETKLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTI KRPMWFQLYVLRDRGFMRNALERAKVAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALR RYWQAVTHPQWAWDVGLHGRPHDLGNISTYLGKPTGLEDYIGWLANNFDPSISWKDLEWI REFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGD ITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMT LTGAKSISEISRDSLVQELGKSLPAALAPLAQGSAGGRCRDDLQAATL >gi|283548475|gb|GG730302.1| GENE 287 294877 - 295350 404 157 aa, chain + ## HITS:1 COG:STM3695 KEGG:ns NR:ns ## COG: STM3695 COG0219 # Protein_GI_number: 16766980 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Salmonella typhimurium LT2 # 1 157 1 157 157 308 96.0 2e-84 MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRH PDYAAFVAAEHPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPAEQKI RIPMMPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRS >gi|283548475|gb|GG730302.1| GENE 288 295462 - 296283 916 273 aa, chain - ## HITS:1 COG:ECs4485 KEGG:ns NR:ns ## COG: ECs4485 COG1045 # Protein_GI_number: 15833739 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Escherichia coli O157:H7 # 1 273 1 273 273 530 96.0 1e-150 MPCEELDIVWKNIKAEARALAECEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPA IAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWL WHQGRQALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSV TLGGTGKAGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP ARIVGKPDSDKPSMDMDQHFNGIHHTFEYGDGI >gi|283548475|gb|GG730302.1| GENE 289 296362 - 297360 1031 332 aa, chain - ## HITS:1 COG:STM3700 KEGG:ns NR:ns ## COG: STM3700 COG0240 # Protein_GI_number: 16766985 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 332 8 339 339 630 96.0 1e-180 MTVIGAGSYGTALAITLARNGHQVVLWGHDPKHIATLEHDRCNVAFLPDVPFPDTLRLES DLAAALAASRNILVVVPSHVFGEVLRNIKPLMRPDARLVWATKGLEAETGRLLQDVAREA LGDSIPLAVISGPTFAKELAAGMPTAISLASTDDAFADDLQQLLHCGKSFRVYSNPDFIG VQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLTEMSRLGAALGADPATFMGMAGLG DLVLTCTDNQSRNRRFGMMLGQGMDVQGAQDKIGQVVEGYRNTKEVRELAHRFGVEMPIT EEIYQVLYCGKNAREAALTLLGRARKDELSRH >gi|283548475|gb|GG730302.1| GENE 290 297381 - 297848 530 155 aa, chain - ## HITS:1 COG:STM3701 KEGG:ns NR:ns ## COG: STM3701 COG1952 # Protein_GI_number: 16766986 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecB # Organism: Salmonella typhimurium LT2 # 1 155 1 155 155 305 98.0 2e-83 MSEQNNTEMAFQIQRIYTKDVSFEAPNAPHVFQKDWQPEVKLDLDTASTQLADDVYEVVL RVTVTASLGEETAFLCEVQQGGIFSISGIEGTQMAHCLGAYCPNILFPYARECITSLVSR GTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA >gi|283548475|gb|GG730302.1| GENE 291 297896 - 298147 304 83 aa, chain - ## HITS:1 COG:STM3702 KEGG:ns NR:ns ## COG: STM3702 COG0695 # Protein_GI_number: 16766987 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Salmonella typhimurium LT2 # 1 83 1 83 83 169 97.0 1e-42 MANIEIYTKATCPFCHRAKALLNSKGVSFQELPIDGDAVKREEMIKRSGRTTVPQIFIDA QHIGGCDDLYALDARGGLDPLLR >gi|283548475|gb|GG730302.1| GENE 292 298199 - 298630 456 143 aa, chain - ## HITS:1 COG:STM3703 KEGG:ns NR:ns ## COG: STM3703 COG0607 # Protein_GI_number: 16766988 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Salmonella typhimurium LT2 # 1 143 1 143 143 258 90.0 3e-69 MQEIMQFVSRHPVLSIAWIALLAAVLFTTFKSLTSKVKVITRGEATRLINKEDAVVVDLR QRDDFRKGHIAGSTNLLPSEIKANNFGELEKHKNKPVIVVDGSGMQCQDSATALIKAGFE QVSVLKDGVAGWSGENLPLVRGK >gi|283548475|gb|GG730302.1| GENE 293 298879 - 300423 1733 514 aa, chain + ## HITS:1 COG:STM3704 KEGG:ns NR:ns ## COG: STM3704 COG0696 # Protein_GI_number: 16766989 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Salmonella typhimurium LT2 # 1 514 1 514 514 969 95.0 0 MSVSKKPMVLVILDGYGYREDSQDNAIFTAKTPVMDALWAKRPHTLIDASGLEVGLPDRQ MGNSEVGHVNLGAGRIVYQDLTRLDVEIKERTFFANPVLTHAVDQAKNAGKAVHIMGLLS AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEHSLQKFEEKFAALGKGR VASIVGRYYAMDRDNRWDRVEQAYDLMTLAKGEFQFATAVEGLQAAYARDENDEFVKATV IRAEGQAEAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAA DIKTAVAYPPASLANTFGEWMAKNEKTQLRISETEKYAHVTFFFNGGVEEPFTGEDRILI NSPKVATYDLQPEMSSAELTEKLVAAIESGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA LDHCVELVAKAVESVGGQLLITADHGNAEQMRDPSTGQAHTAHTNLPVPLIYVGGKNVKA VEGGKLSDIAPTMLTLMGMEIPQEMTGKPLFIVE >gi|283548475|gb|GG730302.1| GENE 294 300433 - 301716 1291 427 aa, chain + ## HITS:1 COG:ECs4491 KEGG:ns NR:ns ## COG: ECs4491 COG4942 # Protein_GI_number: 15833745 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Membrane-bound metallopeptidase # Organism: Escherichia coli O157:H7 # 1 427 1 427 427 557 89.0 1e-158 MRGKAINTITRAVKLRKLSVRPLFYASALSAGVLLCAFSAHADERDQLKSIQADIAAKER AVRQQQQQRSTLLAQLKAQEQAIAVAARQLRETQNSLAQLNAQIAEMNAALAKLEKQRAA QERSLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQETIAQLKQTREE VDAQKAELEDKQSEQQTLLYEQRAQQAKLEQARNERQKTLSGLESSIQQGQQQLGEMRAN ESRLRNSIARAEAAAKARAEREAREAQAVRDKQQDASRKGSTYKPTESEKSLMSRTGGLG SPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILADWLQGYGL VVVVEHGKGDMSLYGYNQSALVSVGTQVRAGQPIALVGSSGGQGRPALYFEIRRQGQAVN PQPWLGR >gi|283548475|gb|GG730302.1| GENE 295 301720 - 302652 741 310 aa, chain + ## HITS:1 COG:STM3706 KEGG:ns NR:ns ## COG: STM3706 COG2861 # Protein_GI_number: 16766991 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 309 1 306 320 517 85.0 1e-147 MPQFRRLLLSLASVLAFATPVFAGKLAIVIDDFGYRPQTENQVLAMPSTISVAVLPNAPH AREMAMKAHNSGHEVLIHLPMAPLSKQPLEKDTLRPEMSSEEIERIIRDAVSKVPNAVGL NNHMGSAMTSSLFGMQKVMQALERYDLYFLDSMTIGNSQAMRAASGTGVKVIKRKVFLDD TQNEADIRRQFNRAVELARRNGSAIAIGHPHPSTVRVLQQMLYSLPADITLVRPSSLLNE PQVDTSRPNLTPPKNGMPDTPRNPFRGVKLCKPKQPLEPVYASRFFSVLGESITQSTLVQ YMKLQWQGWQ >gi|283548475|gb|GG730302.1| GENE 296 302653 - 303690 759 345 aa, chain - ## HITS:1 COG:STM3707 KEGG:ns NR:ns ## COG: STM3707 COG0463 # Protein_GI_number: 16766992 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Salmonella typhimurium LT2 # 8 342 8 342 344 488 68.0 1e-138 MTYTPGLLSVIMPLYNTGEPFIACMDSLIAQTWKNLEIIIVNDGSTDNSAELAQAYADRY PHVHLLHQRNGGVSAARNTGMEIARGEYIAYVDGDDIAYPEMYETLMNMALKDNLDVAQC NADWCIAETGHTWASIPTDRIRSTGVMTGPDWLRKALASRRWRHVVWMGVYRHQTIRDAG LTFLSGLHHQDIIWTTEFMFNAKRARYTEVPLYKYFLHGASVSRLPRTGLKNLVYQRHYI KITRLLDKMNHDYAGRIPIYPEFKQQVIYEALRVCHCIRKEPDEKIRQRMIAEVFVSGMF KRMVSNICSVKLGYQVLLWAIRFSQWRDKSLTPRRLAHLTLDSKD >gi|283548475|gb|GG730302.1| GENE 297 303882 - 304907 1096 341 aa, chain - ## HITS:1 COG:STM3708 KEGG:ns NR:ns ## COG: STM3708 COG1063 # Protein_GI_number: 16766993 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Salmonella typhimurium LT2 # 1 341 1 341 341 703 98.0 0 MKALSKLKAEEGIWMTDVPEPEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMV VGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRPGC FAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVSGAGPIGIMAA AVAKHVGARHVVITDVNEYRLELARKMGITRAVNVSKESLTDVMAELGMTEGFDVGLEMS GAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAA LIQSGLDLSPIITHRFSIDEFQQGFDAMRSGQSGKVILSWD >gi|283548475|gb|GG730302.1| GENE 298 304917 - 306113 1312 398 aa, chain - ## HITS:1 COG:STM3709 KEGG:ns NR:ns ## COG: STM3709 COG0156 # Protein_GI_number: 16766994 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 398 1 398 398 762 97.0 0 MRGDFYKQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPE LIAAAKAGMDSHGFGMASVRFICGTQDSHKQLEQKLATFLGMEDAILYSSCFDANGGLFE TLLGAEDAIISDALNHASIIDGVRLCKAKRFRYANNDMVELEARLKEAREAGARHILIAT DGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEQGSELRD RLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQEFARELQKEGIYVTGFFYPVV PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVIA >gi|283548475|gb|GG730302.1| GENE 299 306328 - 307260 1325 310 aa, chain + ## HITS:1 COG:ECs4497 KEGG:ns NR:ns ## COG: ECs4497 COG0451 # Protein_GI_number: 15833751 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 310 1 310 310 613 97.0 1e-175 MIIVTGGAGFIGSNIVKSLNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI MAGEDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS MASVAFHLNTQLNNGETPKLFEGSENFKRDFVYVGDVAAVNLWFLENGVSGIFNLGTGRA ESFQAVADATLAYHKKGSIEYIPFPEKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT EYMAWLNRDA >gi|283548475|gb|GG730302.1| GENE 300 307273 - 308319 981 348 aa, chain + ## HITS:1 COG:rfaF KEGG:ns NR:ns ## COG: rfaF COG0859 # Protein_GI_number: 16131491 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 1 348 1 348 348 680 94.0 0 MRILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIAMPLG HGALEIGERRKLGHSLREKRYDRAWVLPNSFKSALVPFFAGIPHRTGWRGEMRYGLLNDA RVLDKEAWPLMVERYVALAYDKGVMLTAKDLPQPLLWPQLQVSEGEKSLTCNQFSLSAER PIIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGHQIVLFGSAKDHEAGNEILAALNVEQQ AWCRNLAGETQLEQAVILLAACKAVVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSH KARVIRLITGYHKVRKGDAAEGYHQSLIDITPKRVLEELNDLLLQEEA >gi|283548475|gb|GG730302.1| GENE 301 308323 - 309291 659 322 aa, chain + ## HITS:1 COG:ECs4499 KEGG:ns NR:ns ## COG: ECs4499 COG0859 # Protein_GI_number: 15833753 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli O157:H7 # 1 321 1 325 330 533 81.0 1e-151 MRVLIVKTSSMGDVLHTLPALTDAQKAIPDIQFDWVVEEGFAQIPSWHSAVNKVIPVAIR RWRKAWFSTPIKAERKAFRDAVRLQQYDAIIDAQGLVKSAALVTRLARGIKHGMDWSTAR EPLASLFYTRKHHIAKQQHAVERTRELFAKSLGYAKPTSQGDYAIAQHFLKELNTDAGQY AVFLHATTRDDKHWPEANWRELIGLLKNAGISIKLPWGATHEEARAKRLAEGFSYVEVLP RMSLEEVARILAGAKFVVSVDTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQYTQQSH SGQLQDLDASLINASLVDNNLL >gi|283548475|gb|GG730302.1| GENE 302 309308 - 310588 630 426 aa, chain + ## HITS:1 COG:rfaL KEGG:ns NR:ns ## COG: rfaL COG3307 # Protein_GI_number: 16131493 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A core - O-antigen ligase and related enzymes # Organism: Escherichia coli K12 # 30 421 27 416 419 167 32.0 3e-41 MLRQHMFSRFIYSIKNNPFDFIYFLFYVGILATLGMVLVNPDEALKIFIFSAALSLPLIG KNLKHVCSNKKNLVLPFMLLFFGLLQIIWVEIFKQPGSAFTGAYRSYQNGGKVMIFAALV MIALTSRAPCANKTRITSIWVILTAIGLYLFAGYQLAGAPDPLSYRVALGFERQTGTAYA LTLIALLASQAIINLRLRHTVSLYLLHFLLSLAVIITTQTRAAILVYPVLSIGLFLIHYR HNRAMLLKALLAFVLLVGLASIPLKSIIENRYQNMMVDLHSYSQNNSNTSIGARLAMQRA GIEAGKVHLWGQSLEQRGAEIQRLAIQDNSLQGALEFIDVHLHNEIIDTYSLKGIPGVVV LLLLYSAMFLRAYTQRSPLLFMISAAIAIYGLSDLLLYAKGEALSSVLALCVAAILSSKS NERTMP >gi|283548475|gb|GG730302.1| GENE 303 310585 - 311598 347 337 aa, chain + ## HITS:1 COG:lin1068_1 KEGG:ns NR:ns ## COG: lin1068_1 COG0463 # Protein_GI_number: 16800137 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Listeria innocua # 9 256 17 264 387 89 29.0 1e-17 MINASGYLLSIIIPAYNNAEFITATLASIHQSITDEVEIIIVNDGSTDLTEERIKAFYRE QSCNNVKYISHKNQGVAITRNVGLSQATGKYIGFIDSDDIVCADYFTILLPKLREEKYDI VEFNLTRDINNLHQNKPGTKNALIQQEIILTDDNYAPLLPTFRAGQWHLMTKIFHRDVIG MDRFEEHRRYEDVIFCPFQYFKCRSILKIENKLYYYRLNDKSITENIIDSDADNIFFAMR KMYNYVNENNSKRTVATLMIINCFLEGRKLLRKKKGYYRYNESMLNDIQNALACCDTKVV NNKIILKMKYPHIDRSISEMRYKLLSACKNLFFRKGF >gi|283548475|gb|GG730302.1| GENE 304 311600 - 312655 505 351 aa, chain + ## HITS:1 COG:rfaQ KEGG:ns NR:ns ## COG: rfaQ COG0859 # Protein_GI_number: 16131503 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Escherichia coli K12 # 13 339 1 331 344 315 47.0 7e-86 MFDKVDRVLICKLKFYGDVLLTTPVIASIQARYPHAKIDLLLYKDTKSILAANEGINDFY LIEKKKGVLETVKNYLSVRQQLKKNHYDLIVNLTEQWPIGALIASLRRPSIAFERDKKQW NNLFSRVTPLTGTHIVEQNLSILKGIGFSDADLKKEMLLHYRQDDYQYLTSQLPALASQK YVVIQPTARQKFKCWDDDKFAHVIDHLHQRGLHVYLTCGPALSEQQQVQRIAELCQSSPD LTLAGKTTFLQLAALIDHAVLYIGVDSAPMHMAAALGTPQVCLFGATNYQQWKPWSDKAV LIWAGDYHPMPSRDNLDRSKKYLTWIPEQAVIDAIDTVLHDSDLNNGNEKA >gi|283548475|gb|GG730302.1| GENE 305 312656 - 313600 453 314 aa, chain + ## HITS:1 COG:PM1139 KEGG:ns NR:ns ## COG: PM1139 COG1442 # Protein_GI_number: 15603004 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Pasteurella multocida # 8 250 1 254 302 106 29.0 6e-23 MDNQNNVINIAYCTDANYLEYVAVSIMSVIMNNPEQDLSFFVFVYDVSDDDINKLRSTSD KIQVINIDKEEIEKYNNDFAIKHLNRSTYMRLAVPRLLKDKVEHFIYLDADTLCFDKLND INSIDISNVICAVSHDSPDIHDTKHAKRLGLSTDHYFNAGFLYINVANWIKFDIENKANT VLFEQGKTLPYFDQDALNIAMDGNVKFIDNRWNFLFNWFNDQQKECFFYQKNTLPRIIHF TGGRKPWYKEHTGLSQQLYLFYHHFTPWRNTEMRSYAPRMRPTDYRVYSRQEARRGNFCA SIKWYAKYLKTKLR >gi|283548475|gb|GG730302.1| GENE 306 313628 - 314620 476 330 aa, chain - ## HITS:1 COG:STM3717 KEGG:ns NR:ns ## COG: STM3717 COG1442 # Protein_GI_number: 16767002 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Salmonella typhimurium LT2 # 15 330 15 336 336 258 45.0 1e-68 MNFDCHQSIKKILEFNQAPSEHKTQLNIAWGVDKNFMFGAAISMTSVLLHNKDLNIHFHL FTDYIDADYQQRVAKLAEQFATNISIYIMDANGLKVLPSGNAWSHAMYFRFIAFEYLGEK VDSLLYIDADVMCKGSLYELTQIDLGEHVAAVITDVDDSPARDIEKNKDYFNSGVIFANL KKWKEQNFINSAFDILLDKNNKLSFPDQDVLNILFLKKVIFLERRFNAIYGIKQELKSKD TSKYKEYITPETILIHYIGVTKPWNSWANYPSAQYFVEAWKSSPWADVPLLPARTPKQYK KKSRHERLQGKYFASAISYIGYLWAKLKSK >gi|283548475|gb|GG730302.1| GENE 307 314668 - 315687 376 339 aa, chain - ## HITS:1 COG:rfaJ KEGG:ns NR:ns ## COG: rfaJ COG1442 # Protein_GI_number: 16131497 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Escherichia coli K12 # 23 334 25 336 338 244 40.0 2e-64 MNIDFQKLIIQKHVIDSSTHEKSKKLSVAYGVDRNFLFGSGISMTSVLVNNPDIDVHFYI ATDYIDDDYLESVQRLTQMYSTTVTVLVFDNAAFRELPSTKAWTYAMYYRYFAFEYLSTE LSSVLYLDADVICKGSLREFTEVNFCGEYAAVINDIDEVRIKSGTRLGIPELSNGYFNSG VVFANLEVWREQQLLTKAFSILEKRQKELLYFDQDVLNILFVGNVIFLRRDFNCIYGVDQ ELKNKNDKIYQDFITDDTVLIHYVGVTKPWHSWAKYPVAKFFIEAYKKSAWAEKSLLNAN TAKLYKRKSRHERVQRKYIRSVLSHVMYIKNKLHSSKAY >gi|283548475|gb|GG730302.1| GENE 308 315718 - 316515 564 265 aa, chain - ## HITS:1 COG:no KEGG:CKO_05087 NR:ns ## KEGG: CKO_05087 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: Lipopolysaccharide biosynthesis [PATH:cko00540]; Metabolic pathways [PATH:cko01100] # 1 265 1 265 265 475 90.0 1e-133 MIELKEPFATQWQGKDPFTEVTKLDGEVFRALETRRTLRFEMLGKGYFLKYHHGTTLKEV VKNLISLRMPVLGADREWLAIHRLQALNVDTMTGVAFGQKGLNPLERTSFIITEDLSPAV SLEDFCANWGVERPDFVLKRTIITRVAEMVGKMHRGGVNHRDCYICHFLLQQPMPTDIAD IKLSVIDLHRAQIRQHVPRRWRDKDLIGLYFSSLEIGLTSRDIYRFLRVYFSMPLREIFR QEVRLFEQAVTKAQKIRQRTIRKAL >gi|283548475|gb|GG730302.1| GENE 309 316508 - 317632 364 374 aa, chain - ## HITS:1 COG:ECs4506 KEGG:ns NR:ns ## COG: ECs4506 COG0438 # Protein_GI_number: 15833760 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Escherichia coli O157:H7 # 1 370 1 370 374 542 70.0 1e-154 MNIAFCLYKYFPYGGLQRDFLRVALTVAARGHHVQVFTQSWQGERPAGLEIILVPVTART NHGKNEQYCQWVQHYLSQHPVERIVGFNKMPGLDVYYAADVCYAEKVAREKGFFYKLTRR YRHYSAFEKATFQQGSGTTLLMLTDKQIGDFKHHYQTESSRFRILPPGIYPDRKYSQQPE NSRQIVREKNGIGLDQFLLLQVGSDFKRKGVPRSLQALASLPETIRHRTRLMVVGQDKAD RYRAQARHLGIEEQVQFFSGRDDIAELMSAADLLLHPAVQEAAGIVLLEAVVAGLPVLTT EVCGYAGYINAAQCGVVIPEPFEQQNLNIALLEALQNNELRSRWAGNARHFADTEDLYSL ADKAADIILGFEND >gi|283548475|gb|GG730302.1| GENE 310 318042 - 319319 912 425 aa, chain + ## HITS:1 COG:STM3724 KEGG:ns NR:ns ## COG: STM3724 COG1519 # Protein_GI_number: 16767009 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Salmonella typhimurium LT2 # 1 425 1 425 425 802 94.0 0 MLELLYTALFYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRRPLKPGGIMLHSVSVGE TLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGTDVQHIYLPYDLPDALNRFLNK VDPKLVLIMETELWPNLIAALHKRGIPLVIANARLSARSAAGYAKLGKFVGKLLRRITLI AAQNDEDAARFITLGARSNQVTVTGSLKFDISVTPQLAAKAITLRRQWAPHRPVWIATST HDGEESIIIAAHQALLNQFPNLLLILVPRHPERFPDAINLVRQAGLSYTTRSSGEVPSSD TQVVIGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA RLEQASGLITVTDATTLVKEVSSLLTDADYRNFYGRHAVEVLYQNQGALQRLLQLLEPYL PPKTH >gi|283548475|gb|GG730302.1| GENE 311 319328 - 319807 391 159 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 157 3 158 164 155 47 3e-36 MQKRAIYPGTFDPITNGHLDIVTRATSMFDHVILAIAASPSKKPMFTLEERVELAQQATA HLGNVEVLGFSDLMANFARDNQANILIRGLRAVADFEYEMQLAHMNRHLMPQLESVFLMP SKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMSKLK >gi|283548475|gb|GG730302.1| GENE 312 319847 - 320656 599 269 aa, chain - ## HITS:1 COG:STM3726 KEGG:ns NR:ns ## COG: STM3726 COG0266 # Protein_GI_number: 16767011 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Salmonella typhimurium LT2 # 1 269 1 269 269 525 91.0 1e-149 MPELPEVETSRRGIEPHLVGATIMHATVRNGRLRWPVSEEIYRLSDKPVLSVQRRAKYLL LELPDGWIIIHLGMSGSLRILPEELPADKHDHVDLVMSNGKVLRYTDPRRFGAWLWTTEL DGHNVLAHLGPEPLSDDFNAGYLQQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG IHPDRLASSLSKDECGLLVRVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRE GEPCRICGTPIVAAKHAQRTTFYCRRCQK >gi|283548475|gb|GG730302.1| GENE 313 320754 - 320921 280 55 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|146309770|ref|YP_001174844.1| 50S ribosomal protein L33 [Enterobacter sp. 638] # 1 55 1 55 55 112 100 2e-23 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVLYKEAKIK >gi|283548475|gb|GG730302.1| GENE 314 320942 - 321178 402 78 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228578515|ref|YP_002846861.1| 50S ribosomal protein L28 [Citrobacter sp. 30_2] # 1 78 1 78 78 159 100 2e-37 MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVID KKGIETVLSELRARGEKY >gi|283548475|gb|GG730302.1| GENE 315 321397 - 322062 586 221 aa, chain - ## HITS:1 COG:STM3729 KEGG:ns NR:ns ## COG: STM3729 COG2003 # Protein_GI_number: 16767014 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Salmonella typhimurium LT2 # 1 221 1 221 221 360 80.0 2e-99 MENTGRMMPREKLLAQGAGSLSDVELLALFLRTGILGKDVLTLAKELIQHFGSLYGLLSA DYMAFSHVQGIGLAKYAQLKGIAELARRYHNVRVIEERALLSPEMARDFLQSQLAQEERE IFLVIFMDSQHHVIKHSKLFSGTLSHVEVHPREIVREAIKMNASAVILAHNHPSGCAEPS KADKLITERVVKCCQFMDIRVLDHLIIGRGEYVSFAERGWI >gi|283548475|gb|GG730302.1| GENE 316 322234 - 323454 1037 406 aa, chain + ## HITS:1 COG:ECs4514 KEGG:ns NR:ns ## COG: ECs4514 COG0452 # Protein_GI_number: 15833768 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Escherichia coli O157:H7 # 1 406 25 430 430 723 93.0 0 MSLAGKKIVLGVSGGIAAYKTPELVRRLRERGADVRVAMTEAAKAFITPLSLQAVSGYPV SDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATPAPVAV LPAMNQQMYRAAATQHNLGILASRGLLIWGPDSGSQACGDIGPGRMLDPLTIVDMAVEHF SPVNSLQHLNIMITAGPTREPLDPVRYISNHSSGKMGFAIAAAAAKRGASVTLVSGPVSL PTPPFVQRIDVMTALEMEAAVQSAVQQQHIFIGCAAVADYRAETVAHEKIKKQATQGDEL TVKMVKNPDIIAGVAALDVNRPFVVGFAAETNNVEEYARQKRIRKNLDVICANDVSLSTQ GFNSDSNALHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNRR >gi|283548475|gb|GG730302.1| GENE 317 323432 - 323890 457 152 aa, chain + ## HITS:1 COG:STM3731 KEGG:ns NR:ns ## COG: STM3731 COG0756 # Protein_GI_number: 16767016 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Salmonella typhimurium LT2 # 2 152 1 151 151 293 98.0 8e-80 MMKKIDVKILDPRVGQQFPLPTYATSGSAGLDLRACLDDAVELAPGATTLVPTGLAIHIA DPSLAAVMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSIWNRGQDSFTIEPGERIAQM VFVPVVQAEFNLVEEFEATDRGEGGFGHSGRK >gi|283548475|gb|GG730302.1| GENE 318 324007 - 324603 581 198 aa, chain + ## HITS:1 COG:ECs4516 KEGG:ns NR:ns ## COG: ECs4516 COG1309 # Protein_GI_number: 15833770 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 198 15 212 212 334 96.0 7e-92 MVEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD SLIEFIEDSLITRINLILKDEKDTSARLRLIVLLILGFGERNPGLTRILTGHALMFEQDR LQGRINQLFERIEAQLRQVLREKRMREGEGYTVDETLLASQLLAFCEGMLSRFVRSEFKY RPTDDFDTRWPLIVAQLQ >gi|283548475|gb|GG730302.1| GENE 319 324682 - 325323 701 213 aa, chain - ## HITS:1 COG:pyrE KEGG:ns NR:ns ## COG: pyrE COG0461 # Protein_GI_number: 16131513 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Escherichia coli K12 # 1 213 1 213 213 407 96.0 1e-114 MKPYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDS GIDFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKTHGEGGNLVGSALQGRV MLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAIQEVERDYGCKVIS IITLKDLIAYLEEKPEMAEHLAAVRAYREAYGV >gi|283548475|gb|GG730302.1| GENE 320 325389 - 326105 791 238 aa, chain - ## HITS:1 COG:STM3734 KEGG:ns NR:ns ## COG: STM3734 COG0689 # Protein_GI_number: 16767019 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase PH # Organism: Salmonella typhimurium LT2 # 1 238 1 238 238 411 98.0 1e-115 MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGVPRFLKGQGQGWIT AEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKTLGEFTITLDCDVIQ ADGGTRTASITGACVALADALNKLVASGKLKTNPMKGMVAAVSVGIVNGEALCDLEYVED SAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLLALARGGIESIVATQKAALEN >gi|283548475|gb|GG730302.1| GENE 321 326231 - 327094 1025 287 aa, chain + ## HITS:1 COG:STM3735 KEGG:ns NR:ns ## COG: STM3735 COG1561 # Protein_GI_number: 16767020 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Salmonella typhimurium LT2 # 1 287 1 287 287 451 98.0 1e-127 MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRSLEPVVRERIRTRLTRG KIECTLRFEPDASAQGELILNEKLAKQLVSAANWVKMQSDEGEINPVDILRWPGVMAAQE QDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRLEGVSAEVTKVRAHMPEILQW QRERLVAKLEDAQVQLENNRLEQELVLMAQRIDVAEELDRLEAHVKETYNILKKKEAVGR RLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE >gi|283548475|gb|GG730302.1| GENE 322 327354 - 327971 713 205 aa, chain + ## HITS:1 COG:yicG KEGG:ns NR:ns ## COG: yicG COG2860 # Protein_GI_number: 16131517 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 205 19 223 223 310 93.0 1e-84 MLLHVLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVK NPEYVIIVAAAAVLTTIIAPVMPYLRKIFLVLDALGLVVFSIIGAQVALDMGHGPIIAVV AAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFAAAVLYIVLQHYVSSHDVVVISTLLF GFTARLLALRLKLGLPVFYYRHEGH >gi|283548475|gb|GG730302.1| GENE 323 327968 - 329647 894 559 aa, chain - ## HITS:1 COG:yicF KEGG:ns NR:ns ## COG: yicF COG0272 # Protein_GI_number: 16131518 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Escherichia coli K12 # 1 557 3 560 562 748 68.0 0 MRLWKCLGMVLLVWNLPVWAVCPAWSSARANEEISRLRQQMTRWNDSYWKQGVSAVDDGV YDQLNAQLTQWQRCFGDDSSSDLSTPPINGTIAHPVPHTGVRKLADKQALQQWMRVRSDL WVQPKVDGVAVTLVYRHGNLVRAISRGNGLKGEDWTQKVLLIPSVPHTTKGLLANSTLQG EIFLQQEGHVQQQRGGMNARSKVAGMMMRQSNPELLRSLAIFIWAWPDGPAVMSERLAQL TAAGFSFAQRYTQAVKNADDVEHARARWWTSALPFVTDGVVVRSGKEPQARYWVPGQGDW LAAWKYPPVAQVSEVTDIQFSVGKSGKIAVVALLAPVMLDDKRVQRVNIGSVRRWNEWDI APGDRILISLAGQGIPRIDEVVWRSTQRTKPKPPEGRFNSMTCFYATPECYEQFIARLVW LGAKEVLELEGIGEAGWRELHQAYRFEHIFSWLGLTQEQLQSTLGVSKGEKIWHQFNLSR HLPFTRWVIAMGIPLTQATLNASRDDSWQQLQDRDEQSWRQLPSMGERRTRRVIQWLEDR EITALSNWLAAQRIVGFMR >gi|283548475|gb|GG730302.1| GENE 324 329911 - 330534 440 207 aa, chain + ## HITS:1 COG:STM3740 KEGG:ns NR:ns ## COG: STM3740 COG0194 # Protein_GI_number: 16767025 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 392 96.0 1e-109 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAPRPGEVHGEHYFFVNHD EFRSMIGRDAFLEHAEVFGNYYGTSRETIEQVLASGVDVFLDIDWQGAQQIREKMPHARS IFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALGDLK TIIRAERLRMSRQKQRHDALISKLLAD >gi|283548475|gb|GG730302.1| GENE 325 330589 - 330864 452 91 aa, chain + ## HITS:1 COG:ECs4524 KEGG:ns NR:ns ## COG: ECs4524 COG1758 # Protein_GI_number: 15833778 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Escherichia coli O157:H7 # 1 91 1 91 91 112 100.0 2e-25 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN NQILDVRERQEQQEQEAAELQAVTAIAEGRR >gi|283548475|gb|GG730302.1| GENE 326 330883 - 332994 2184 703 aa, chain + ## HITS:1 COG:STM3742 KEGG:ns NR:ns ## COG: STM3742 COG0317 # Protein_GI_number: 16767027 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Salmonella typhimurium LT2 # 1 703 1 703 703 1383 98.0 0 MYLFESLNQLIQNYLPEDQIKRLRQAYLVARDAHEGQARSSGEPYITHPVAVACILAEMK LDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFR KMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKT ELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHL YSIYCKMVLKEQRFHSIMDIYAFRVIVHDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQ SLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHA CVGARVDRQPYPLSQPLFSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRD DSVSLGRRLLNHALGGSRKLAEIPQESIQRELERMKLATLDDLLAEIGLGNAMSVVVAKN LQQGEASANVPAQSGHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESC RNIRGYQKEPEKFMAVEWDKETEQEFITEIKVDMFNHQGALANLTAAINTTTSNIQSLNT EEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN >gi|283548475|gb|GG730302.1| GENE 327 332999 - 333688 575 229 aa, chain + ## HITS:1 COG:STM3743 KEGG:ns NR:ns ## COG: STM3743 COG0566 # Protein_GI_number: 16767028 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Salmonella typhimurium LT2 # 1 228 1 228 229 414 92.0 1e-116 MNSKRYERICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTM ASSAAGSNSWVQVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQ EKTGITQEALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRENSMLPE DEQQRLLFEGGYPVLANVAKRKGLPYPHVNTQGEIEADATWWATMQSAK >gi|283548475|gb|GG730302.1| GENE 328 333694 - 335775 1990 693 aa, chain + ## HITS:1 COG:ZrecG KEGG:ns NR:ns ## COG: ZrecG COG1200 # Protein_GI_number: 15804193 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Escherichia coli O157:H7 EDL933 # 1 693 12 704 704 1263 95.0 0 MKGRLLDAIPLNTLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIGELLPGV YATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFSAAMKNSLATGRRVLAYGEAK RGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIA ELLPPELLQGMMSLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALR AGAQRFHAQPLNPDDRLKNQLLAALPFKPTGAQARVTAEIERDMALDVPMMRLVQGDVGS GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGVEVGWLAGKQKGKAR LAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFH PHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRNACT HEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQSVMAAFK QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKS PLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGTAEFKVADLLRDQAIIPE VQRIARHIHERYPQQAEALIERWMPETERYSNA >gi|283548475|gb|GG730302.1| GENE 329 335815 - 337020 1632 401 aa, chain - ## HITS:1 COG:gltS KEGG:ns NR:ns ## COG: gltS COG0786 # Protein_GI_number: 16131524 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Escherichia coli K12 # 1 400 1 400 401 591 94.0 1e-168 MFYLDTLSTLVAATLVLLLGRKLVQSVSFLKKYTIPEPVAGGLLVAIALLVLKKSMGWEV NFDMTLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVVGLLLMQNAIGIGMASLLG LDPLMGLIAGSITLSGGHGTGAAWSKLFIERYGFTNATEVAMACATFGLVLGGLIGGPVA RYLVKHSTTPDGMPDDQAVPTAFEKPDVGRIITSLVLIETIALIAICLTVGKIVAQMLVG TVLELPTFVCVLFVGVILSNGLALMGFYRVFERAVSVLGNVSLSLFLAMALMSLKLWELA SLALPMLAILVVQTIFMALYAVFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAI TERFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLLLPIFAQ >gi|283548475|gb|GG730302.1| GENE 330 337246 - 338637 1678 463 aa, chain + ## HITS:1 COG:STM3747 KEGG:ns NR:ns ## COG: STM3747 COG2233 # Protein_GI_number: 16767032 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Salmonella typhimurium LT2 # 1 462 1 462 463 770 95.0 0 MSVNAVESTNAQPVAQTHNSELIYRLEDRPPLAQTLFAACQHLLAMFVAVITPALLICQA LGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKT GGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTS IGGGYAAMSDNTFGAPKNLLLAGVVLALIIVLNRQRNPYLRVASLVIAMAAGYLLAWFMG MLPQNTAPVSQDLIMVPTPLYYGLGIDWSLLLPLMLVFMITSLETIGDITATSDVSEQPV SGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLI ALGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGL GVSQQPLILQFAPDWVKNLLSSGIAAGGITAIVLNLVFPPEKQ >gi|283548475|gb|GG730302.1| GENE 331 338759 - 340468 1922 569 aa, chain + ## HITS:1 COG:no KEGG:CKO_05112 NR:ns ## KEGG: CKO_05112 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 569 1 569 569 947 87.0 0 MKFIGKLLLYVLIACAVAILGLYFLLQTRWGAEHVSAWISENSSYHLAFDAIDHRFSSPS HILLENVTFGRDGQPATLVAKTVDIGLSSRQLTDPLHVDTILLQNGTLNLSRKTAPLPFQ ADRLQLQDMALNSPGSDWNLSAQRVNGGVIPWEPEAGKILGNKAQIQLSASSLTLNDVPT TNVLIEGSIDHGQVTLSNIGADVARGALTGVAQRNSDGSWMVENLRLNDIRLQSDKSLVD FFAPLTTIPSLQIGRLEVTDARLQGPDWAVTDLDLSLRNMTFSKDDWQTQEGKLSMNASE FIYGSLHFFDPILNAEFAPQGIALRQFTTRWEGGMLRTSGNWSRSNKALVLDDAAIAGLE YTLPENWKQLWMEPLPTWLNSLTLKKFSASRNLVIDIDPAFPWQLTALDGYGANLGLVQD NQWGIWSGSATLNAAAATFNRTDVRRPSLALTANGSTINISELSAYTEKGLLEATASISQ LPQRQAQVSLNGRGVPMTILQQWGWPALPISGDGNIQLTASGNIQANAPLKPTVNGQLHA VNAEKQQVTQTMQAGVVSGGEVTAPPVAQ >gi|283548475|gb|GG730302.1| GENE 332 340510 - 341187 656 225 aa, chain - ## HITS:1 COG:ECs5070 KEGG:ns NR:ns ## COG: ECs5070 COG3822 # Protein_GI_number: 15834324 # Func_class: R General function prediction only # Function: ABC-type sugar transport system, auxiliary component # Organism: Escherichia coli O157:H7 # 1 225 1 226 227 216 48.0 3e-56 MKRSHINYVIDKAHAIAETFRVCLPDFAYFTADAWRQQDPVLWREVRDLQLGWDITDFGR GDFAQTGLTLLTLRNGLMGSADYPKPYAEKMLQIQQEQQTPWHFHRHKMEDIVNRGGGDL CMQLAWSTPDDEYDTRRIIEVSVDGQRRTVKSGDTLVLKPGQGVCLPPRLYHRFWAEKAF VLGWEISMVNDDLHDNHFLEPGGRFPTIEEDEPVKWLLCSEYSRL >gi|283548475|gb|GG730302.1| GENE 333 341237 - 342097 1126 286 aa, chain - ## HITS:1 COG:lin2238 KEGG:ns NR:ns ## COG: lin2238 COG0191 # Protein_GI_number: 16801303 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 286 1 286 299 375 60.0 1e-104 MLVSMKELLQPTRQHGFAIGAFNVADSCFVRAVVEEAEATNTPAIISIHPSEHDFLGDAF FSYVRDITLRSPVPFTLHLDHGASVEHVLRAIQCGFTSVMIDGSLLPYEENVALTREVVK LAHAVGVSVEGELGTIGQTGTSVEGGVSKVTYTDPAQAQDFIARTGADTLAVAIGTAHGI YPKGMQPELQMNILRDIAGRVDIPLVLHGGSANPDAEIAESVTLGVGKINISSDMKYAYF QKVREILAKETWWDPNVIYPEAISAARDVIRHKMKLFGSTGKASLY >gi|283548475|gb|GG730302.1| GENE 334 342178 - 343029 730 283 aa, chain - ## HITS:1 COG:lin2239 KEGG:ns NR:ns ## COG: lin2239 COG0191 # Protein_GI_number: 16801304 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Listeria innocua # 1 283 1 283 284 184 37.0 1e-46 MFADMKSMVTKAWREQYALLAINCMNLESARAAVRVAEKHRAPIILNLYQGHLDHFPAPI AAAVVKTLAEEAAVPVALALDHGKDPVRIRQAFRAGFSGLMIDASAFALEENIRQTRAVV ELAASVSLCVEGELGHLADAPRYDHAANADLMTQAADVEPFIQQTGIDLLAVSVGTAHGM YAPGVTPAIDFQRLEDIARLSTVPLALHGGSGTPFDQLQRCPAFGVAKINVGAAVFEAGK AALLHTLCRDTSGELVDALALMEQACEEAIIPYLQASGAINKA >gi|283548475|gb|GG730302.1| GENE 335 343041 - 344132 1399 363 aa, chain - ## HITS:1 COG:lin2240 KEGG:ns NR:ns ## COG: lin2240 COG1299 # Protein_GI_number: 16801305 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Listeria innocua # 11 361 5 358 363 345 52.0 6e-95 MSENKIPLSQEIKKHLLTGISWMIPLIVAAGICIALGQILGGTNVGEKTGTIPWMLNQIG GWGMGLIVPLISAAIAYSIADRPGFAPGLIVGFVCGEIHTGFIGGMLGGFLVGYTVLLLK RYIRLPQSMQGLMPIMVLPVLSTIIGGLLMMTLIGKPIAWLQDALIHLLESMQGGSRFLM GAILGAMATFDFGGPVNKTMSLFADGMLVSGVYGPEAVKFVGSIIPPFGITLSFLLTRHK YTRAEREALKAAFPMGICMITEGVIPIAARDLLRVVGSCVVASAIAGGLIMVWGVESPVP HGGMFVVPLFTHPLLFCLALGIGTVICGVMLSLWKKPVTERDEEFDELSDQKLKDEEITF TLE >gi|283548475|gb|GG730302.1| GENE 336 344159 - 344479 363 106 aa, chain - ## HITS:1 COG:lin2241 KEGG:ns NR:ns ## COG: lin2241 COG1445 # Protein_GI_number: 16801306 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system fructose-specific component IIB # Organism: Listeria innocua # 1 103 1 103 103 107 56.0 6e-24 MNIVCVAACTAGIAHTYIAREKLIKGAKALGHNIKVETQGTIGTENELLADDISAADVVI LAVDVKIKGEERFSNKRIVRVKTEIVIKSPIQFLEKVEKSLVNNNQ >gi|283548475|gb|GG730302.1| GENE 337 344499 - 344969 553 156 aa, chain - ## HITS:1 COG:lin2242 KEGG:ns NR:ns ## COG: lin2242 COG1762 # Protein_GI_number: 16801307 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Listeria innocua # 1 149 6 154 157 132 46.0 2e-31 MDITKILNTNRVILDMKATNKTEAIEELTDILQKDGAISCRETFIQDVWQRESEGSTGFE NHIAIPHGKSSAVVNTTLAIGRTRQDIPWETLDGSNVRCIILFAVRLEDQNTTHIRLLSQ VAGALADDDIIEQLLVESSPQKIIELFSQYAESNVC >gi|283548475|gb|GG730302.1| GENE 338 344996 - 346549 1182 517 aa, chain - ## HITS:1 COG:lin2243 KEGG:ns NR:ns ## COG: lin2243 COG3711 # Protein_GI_number: 16801308 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Listeria innocua # 3 502 2 485 485 203 30.0 8e-52 MQMITSRQNRLLKFLLSRKEYVTLLKIAEYLSVSEKTVQRDLRLLEPWLAEWKIAIDKRA GAGVILNADNITDLLYLDQLLGTEGDDTDGMMNNSRRVKIASQLLSETPHETSISKLSER YFISSASIVNDLKVIESWITPLGLSLIRSQSGTHIEGSESGVRQAMASLINGVINHNEPG SVVYSRLDPGSYNALVHYFGEEDVLFVQTLLQEMENDLCWSLGEPYYVNIFTHILIMMYR ITRGNALPRKDENITSCDENIFSIASRMIQHIEKRIAHPLPEDEVWFIYQYIISSGVVIE EHNDVSVIGHMHSSDEARLITHRLIATFAEMVDSDLSQDTALYDGLLIHIKPLINRLNYQ IRIRNPLLEDIKGELQDVWRLTQCAVNRVFCGWGERAVSEDEVGYLTVHFQAAMERQIAR KRVLIVCSTGIGTSHLLKSRILRAFPDWTIVGVVSAGSLPSVLTDDIELVVSTINLPAIA MPVVYVTAFFNDADIKRVTETVITEKLHRATSLVVEN >gi|283548475|gb|GG730302.1| GENE 339 346996 - 349314 2669 772 aa, chain - ## HITS:1 COG:STM3749 KEGG:ns NR:ns ## COG: STM3749 COG1501 # Protein_GI_number: 16767034 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Salmonella typhimurium LT2 # 1 772 1 772 772 1513 90.0 0 MKISDGNWLIQPGLNVINPVQVFEVEQQGNEMLVYVAPRDVRERTWQLDTPLFTLRLFSP QEGVVGVRMEHFQGALDNGPHYPLNVQRDVNVEMRNTAEFAELKSGNLSVRVTKGEFWSL DFLRNGERITGSQLKNNGYVQDTNSGRNYMFERLDLGVGETVYGLGERFTALARNGQTVE TWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYF VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL HVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIRRLKEKGLKVCVWINPYIGQKSPIFKEL KDKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYANKLKGLVEIGVDCFKTDFGER IPTDVQWCDGSDPQKMHNHYAYIYNELVWNVLKETVGEEEAVLFARSASVGAQQFPVHWG GDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLH GSKSYRVPWAYDDKSCDVVRYFTQLKCQLMPYLYRQAALANEHGTPMMRAMVLEFPDDPA CDYLDRQYMLGDSVMVAPVFSEAGDVQFYLPEGRWTHLWHNDEIQGSRWHKQQHDFLSLP VYVRDNTLLALGSNNQKPDYAWHEGTAFQLFHLQEGREAVCDVPAADGSVIFTLKATRVG KTITVQGSGDARNWTLCLRNLPQVSGVQGGSCASSELGVVVTPEDERLTITL >gi|283548475|gb|GG730302.1| GENE 340 349325 - 350707 502 460 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020673|ref|YP_526500.1| ribosomal protein L9 [Saccharophagus degradans 2-40] # 6 442 9 517 522 197 28 4e-49 MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI SDPCMGLLADRTRSRWGKFRPWVLFGALPFGLVCVLAYSTPDFSLHGKMIYAVITYTLLT LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKAL GFQGGIAVLSVVAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWQNDQWRIVGLLTILN IMAVCIRGGAMMYYVTWILGSPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTN ALLAVISVAMFFVPMHANITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTLVPAICYLLS AVIAKRFYTLKTPYLTEIMRQLAQGARRNQQDFTTKELQN >gi|283548475|gb|GG730302.1| GENE 341 351253 - 352437 381 394 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 1 388 8 402 406 151 27 5e-35 MALTNLEIKRAQPKEKAYSLSDGLGLALLIEPNGSKGWRFRYRFDNKARLMSFGSYPLVS LSEAREMRDKSRKLVISGVDPMAERRTQKALREQAKAMTFEVVSREWHRSKADRWTLGYR DEIIKTFEQDVFPFIGQRPMGDITPQELLQVLKRIEQRGALEKTRKVRQRCGEVFRYAII TGRAKYNPAPDLAMALATPKKQNYAWLPANEMPYFIRDLEGYTGSLITRNAAKLVMLTGV RTQEMRFATWDEIDFENALWEIPPERMKMRRPHLVPLSRQVIELLKQLEPITKNFPYIFI GRNSRKKPISKESVNQVIELLGYKGRATGHGFRHTMSTILHEHGFDSAWIETQLAHIDKN SIRGTYNHAQYLEKRREMMQWYADFLGSQKDKFN >gi|283548475|gb|GG730302.1| GENE 342 353922 - 354281 111 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836045|ref|ZP_06355786.1| ## NR: gi|283836045|ref|ZP_06355786.1| putative phage head-tail adaptor [Citrobacter youngae ATCC 29220] putative phage head-tail adaptor [Citrobacter youngae ATCC 29220] # 1 119 463 581 581 240 100.0 3e-62 MKNYVSGFDQAYSIKELKTPDTNRHLYWKMSDRVMQKAKENGPKSIFEDMFNTIHLLYGN SSIYYMYSSPDEKPHRAEAPMHTFSYSSEMPNMDIIDPFNFNYRLLRFRIERIEDEINN >gi|283548475|gb|GG730302.1| GENE 343 355516 - 355989 -69 157 aa, chain + ## HITS:1 COG:no KEGG:Cag_0690 NR:ns ## KEGG: Cag_0690 # Name: not_defined # Def: hypothetical protein # Organism: C.chlorochromatii # Pathway: not_defined # 6 147 419 562 565 99 33.0 6e-20 MHTTTLRNYEEILEYKNDDNHELLREKYTQGSILYPALMILAETLKNSELKADLVEFCTE NLKHCTLQYWFPNHTSESYYYNNKEIHGSAFSEITETQYFSIPDILLECKSSSIDNLSAI KYGYAPLLLVASRHYRYPVPLHFFTAIIEDSLDTNKL >gi|283548475|gb|GG730302.1| GENE 344 356074 - 356868 446 264 aa, chain - ## HITS:1 COG:STM2764 KEGG:ns NR:ns ## COG: STM2764 COG2801 # Protein_GI_number: 16766076 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 37 187 5 155 155 271 84.0 8e-73 MSLRQACRTLSLSRTVYFYQPDTRRDEPVICALTELAERYPRYGFKKLFQLLRRQGNTWN HKRVHRIYCLLKLNFRRKGKQRLPVRNPAPLATPQALNQSWSIDFMHDALVCGRRFRTFN VVDDFNREALAIEIDLNIPAQRVIRVLDRIVANRGYPLKMRMDNGPELVSLALAQWAEEH GVQLEFIKPGKPTQNAFIERFNRTYRTEILDFYLFRTLNEAREITGRWLMEYNNERPHES LNNLTPEEYRLMAENPELSKSVWN >gi|283548475|gb|GG730302.1| GENE 345 356919 - 357185 349 88 aa, chain - ## HITS:1 COG:STM2765 KEGG:ns NR:ns ## COG: STM2765 COG2801 # Protein_GI_number: 16766077 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 88 1 88 88 135 88.0 1e-32 MRKIRFTEHQIIAVLKSVEAGRTVKDVCREAAISEASYYNWKAKYGGMEAADIKKIKDLE DENRRLKQMFADLSLECRALKDVIEKKL >gi|283548475|gb|GG730302.1| GENE 346 357979 - 359238 -29 419 aa, chain - ## HITS:1 COG:no KEGG:Ent638_3102 NR:ns ## KEGG: Ent638_3102 # Name: not_defined # Def: ATP-dependent OLD family endonuclease # Organism: Enterobacter_638 # Pathway: not_defined # 1 419 164 582 582 603 73.0 1e-171 MPTEEEAKKTLNEILKTMAESTLKVAELQELEDARAKIKELQDKMYNTETIASYQDSVND YFKKIFDDTRIAFKDIKERLAWTENKLGKEFDIEFVKTTIDGERDDEIPCSHNSVGHGTI RTAIFTLLLMKDVAEKFERRAGRKDYMVLFEEPELFLYPKMVKELRELIYQVSTEDLPYQ VLCASHSPTMIDISKPKSSIIRLVKTSNGTKIFQINDSFLKEAKDIKTDEELKQEMYEVL RFNPFMCESFYADEVVLIEGPTEEIISRAYLQEQQTNKNIFILNCGTVNNIPFYQKIFSK FNIKYHAIFDTDQATIVSHDVNGCPFFDKGIQKTISEQYQLDKSKNQNLVGILRVHSTTF EPAHQNDSVPEDLRFVQTSDKSKPYNANLYWKKILKPNLGHVDIHKVPIIKYLKEICDH >gi|283548475|gb|GG730302.1| GENE 347 359949 - 360224 118 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086425|ref|ZP_06571504.1| ## NR: gi|291086425|ref|ZP_06571504.1| phage immunity repressor protein [Citrobacter youngae ATCC 29220] phage immunity repressor protein [Citrobacter youngae ATCC 29220] # 1 91 1 91 91 160 100.0 4e-38 MFAVLLARPALALSMVAQAGASKEAPGRDNRYANPVWVTTSEPGVSGGGVNLLITKRSVA YVPCPAVPVAFASAGGIYENYDRTTLSQRIG >gi|283548475|gb|GG730302.1| GENE 348 360181 - 360384 131 67 aa, chain + ## HITS:1 COG:no KEGG:KPN_04117 NR:ns ## KEGG: KPN_04117 # Name: not_defined # Def: hypothetical protein # Organism: K.pneumoniae # Pathway: not_defined # 1 67 1 67 67 90 82.0 2e-17 MKITIEQPSARELVDRSRVLVHVMVDNPDEIGPNYVLLLVLAEQLQQLRDIFEEDEVRRL RDEKLPR >gi|283548475|gb|GG730302.1| GENE 349 360617 - 361663 776 348 aa, chain - ## HITS:1 COG:no KEGG:PAU_01005 NR:ns ## KEGG: PAU_01005 # Name: yabA # Def: regulatory prophage protein # Organism: P.asymbiotica # Pathway: not_defined # 1 343 286 630 639 451 60.0 1e-125 MSELTHALTTSLPLRRGSEGFNISQDYLVKGLIPAGALCSIYGPGGSFKSFLAVSLACHV ASGKPWSGRRVSQGAVLFIAGEGGTGVSRRIRAWELCVNDEMVLDNMFRVDCPVFPATPG SVQQVILAAQDILQLTGMPVRLIILDTLARCFGSSDENTARDMGAFIQGCDAIRYHTHST MLIVHHSGKDQDRGARGSSAFQAALDAEFNVRREGRRNAITLSCTKMKDAEMPEVTAYDL SEAEICIDDDGEPVTSLVLNDVPRRPDDDDSPATSGVPYMTHNHAALWKCINQRISQNQS CTRALLRDDLRARGMNVDKKFSRWLEKLLREQLIVLDGEEIRLADVGE >gi|283548475|gb|GG730302.1| GENE 350 361675 - 362649 326 324 aa, chain - ## HITS:1 COG:YPO1090 KEGG:ns NR:ns ## COG: YPO1090 COG4643 # Protein_GI_number: 16121391 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 323 1 314 319 270 44.0 2e-72 MSRYVSDITASARHQWPMIYEQLGIVVPPAHRHGPCPCCGGKDRFRMDDLDGRGTWFCNQ CGAGDGLDLVARVFGCNLVRAARKIWELSPEPLVPPAREKWQAGNMDARVKALLRHCQPG EAPYLAKRGWQRRQWLLTEHSSRTIGGFHFGAGTLVLPLRDTGMRLTGAQFIHPGGKKYL LPGSLLKACFCPVHQATDNGFPEPWKPDVTPPEGLIITEGYATALAVSCLHPFPVVAAMS ANNLKNVAVACRAQWPGCCFILAGDNDFRSQNNTGLLNAQAAAIAVNGRLVMPPGNEMSD WDEFYRHHGKAASRNAFARELFNN >gi|283548475|gb|GG730302.1| GENE 351 362646 - 362894 208 82 aa, chain - ## HITS:1 COG:YPO1904 KEGG:ns NR:ns ## COG: YPO1904 COG3311 # Protein_GI_number: 16122151 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Yersinia pestis # 4 61 35 92 93 63 51.0 1e-10 MNNSQRFLRLHQVKEKTGFKKSWIYQQMRLKKFPAAIRIGSTHVAWLESDIEEWIKQQVS NSSLPEKSRAAVHDRKKYRRAK >gi|283548475|gb|GG730302.1| GENE 352 362941 - 363819 619 292 aa, chain - ## HITS:1 COG:YPO1092 KEGG:ns NR:ns ## COG: YPO1092 COG0582 # Protein_GI_number: 16121393 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 1 287 4 290 298 309 58.0 3e-84 MPRLTQRMEKLALLAGGSFKTIHDRIRIAGRLSQHLHRLNIQIKDLQHLKSSHIESYIQA RLDSGITPRTLQNEMAALRTILAQAGREKFAHSERISNKALGLGNASRAGTHRALTPDRW QAALADFRDRDEGLAVTLELARAMGLRSQEAVQCCQSLKSWAAALDRGDERLQVVFGTKG SRPRKTLALEPEHLREILSRAIPLAEQRHGRLIDKPDLRSAMNYWRSSASRAGLTGPYAP HSLRYAWAQEAMTAYRKQGLSMKEARAMVAMDLGHGDGRGRYIQRVYGEQTE >gi|283548475|gb|GG730302.1| GENE 353 364750 - 366219 829 489 aa, chain - ## HITS:1 COG:Cj1552c KEGG:ns NR:ns ## COG: Cj1552c COG2865 # Protein_GI_number: 15792860 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen # Organism: Campylobacter jejuni # 23 488 21 487 488 409 44.0 1e-114 MSVSKEEVGLRSLLKELVSLPKETEWAEFKHNAIKPEELGEYISALANSAALLGKPTAYM VWGVDDETHSIIGTDFNPSLAKHKQQELESWLLQGLEPKIDFTFHEFLSPENDAVVILEI NANCHTPVRFSGTEFIRIGSYKKPLGKHPEKERALWRVFDRKPWEYRVARDKCSIDEVLQ LIDYPSFFSLLSQPLPENKDSIMDYLAKDFVVERNDAGSWNITNLGAILFARELDAFKNL SRKAIRLIQYDANNRFKTVKELQGHKGYAVGFEGLIDYINNLLPSNEVIGKAFRSEVRMY PELSIREVVANSLIHQDFNIGGTGPMLELFADRMEISNPGIPLVAIDRLLDSPPRSRNER IASLMRRMGICEERGSGIDKVVIETEIYQLPAPQFEVYQEHTKVTLFAHRDFKDMDNEEK VRATYLHCVLKYLEKVPMNNTTLRERFGVDEKNSAMISRIIKEAMKEGRIKQYDSSVGTK AMRYIPFWA >gi|283548475|gb|GG730302.1| GENE 354 366770 - 367060 274 96 aa, chain + ## HITS:1 COG:no KEGG:Ent638_0067 NR:ns ## KEGG: Ent638_0067 # Name: not_defined # Def: hypothetical protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 96 1 96 96 141 72.0 7e-33 MADTHSTPDTAQSGTERSLIVGYRPNVFDKSTPKNILSGKWLRAAGFDTGQQITVKVMNG CIVLMVYGEQEQRLQNELKEASQKLNRIESTLATLQ >gi|283548475|gb|GG730302.1| GENE 355 367399 - 367659 225 86 aa, chain + ## HITS:1 COG:no KEGG:HDN1F_34890 NR:ns ## KEGG: HDN1F_34890 # Name: not_defined # Def: probable antitoxin, prevent-host-death family protein # Organism: Gammaproteobacterium_HdN1 # Pathway: not_defined # 1 80 1 80 86 108 68.0 9e-23 MHTLTANEAKTQFGDMLLKAQREPVQINRNGKPVAVVVSIEDYEQMEAMKLQLLKAKIQR AQNDIHLGNTVDGDAFFDELMDQHKG >gi|283548475|gb|GG730302.1| GENE 356 367663 - 367965 184 100 aa, chain + ## HITS:1 COG:VCA0311 KEGG:ns NR:ns ## COG: VCA0311 COG3668 # Protein_GI_number: 15601076 # Func_class: R General function prediction only # Function: Plasmid stabilization system protein # Organism: Vibrio cholerae # 3 98 12 106 111 62 36.0 3e-10 MSYKLTGEAQRDIIEIRDYTSRNWGAKQSRDYLRKLQVVLSQLAEMPGMGQHRIDDFGAD IYSFPYVSHMIYYSAQDTNIVVLAVLHQSRVPTKHLGQRL >gi|283548475|gb|GG730302.1| GENE 357 368154 - 370958 2823 934 aa, chain - ## HITS:1 COG:STM3757_2 KEGG:ns NR:ns ## COG: STM3757_2 COG3468 # Protein_GI_number: 16767041 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Salmonella typhimurium LT2 # 595 934 157 496 496 568 84.0 1e-161 MPNPKSYSRIAIAVSAALTSMVFSAHAAWVDVDSLPSSGLVSSLPPELQAIIPAQANANF AKTSAMPNYVYQWSAGTIPVYGNGITLNGPGAEAFEHSLTVIQNNKTGSPGVIFGDDLTI RTQSKNAANNGKDVDGIRTHGANTPDNPVFIITGDRTSIYVDGQDGDGINAGYNAIGQGW IGSANIYVGDDLYIKTTGNQGRGITANAMRDATLAKNTIVVGDRAHIVTTGDGSEGLRSG QSGSSILLGNDATIETSGASSTGIYAATSSKTELGNNATITVNGASAHAVYSTNATVNLG DNATISVNSSGKAASYSKAPRGLFAISRGAINLAGGAAITMVGDHSTESYAISTETGGTV DGSAGGRFLIDGDLHAAGGTNATSSLPQQNSTIKLNMTDNSLWSGASYITSATAGTGVIS LQMSDATWNMTNSSTLTDLTLNSGAVVNFGHADGEPWQTLTINEDFTGNGGKLVFNTVLN DDASETNKLTVLGNTTGNAFVAVNNIGGTGAQTVEGIEIIEVAGNSDGTFEKASRIVAGA YDYNVVQKGSNWYLTSFIPAPPDPVDPVDPDPVDPDPVDPIIPDPVDPDPIDPVDPVIPE PEEPHVPPVTEQQYRPEAGSYLANNYAANTLFMTRLHDRLGETQYVDMLTGEKKVTSLWM RNVGAHTRFKDGSGQLKTQSNSYVLQLGGDLAQWSSDGLDRWHIGAMAGYANSQNRTQSS LTGYHSRGQVTGYSVGLYGTWYANDADKTGTYVDTWALYNWFDNKVMGQEQAAEKYKSSG ITASVEAGYSFKLGESERSSYWLQPKAQVVWMDVQADSHREANGTRVKDNTDGNLMTRLG VKAFINGHNAIDDGKSREFQPFVEANWIHNTQTTSVKMDDVSNDMRGTKNIGELKVGVEG QITPRLNVWSNVAQQVGDKGYSDTRGMLGVKYNF >gi|283548475|gb|GG730302.1| GENE 358 371032 - 371445 286 137 aa, chain - ## HITS:1 COG:STM3756 KEGG:ns NR:ns ## COG: STM3756 COG2771 # Protein_GI_number: 16767040 # Func_class: K Transcription # Function: DNA-binding HTH domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 137 69 205 205 216 80.0 1e-56 MDFSFPNLRLFADPQWVDRLAYSGMHIVLIADRNLAPLANYWLSKSNKIQGIIYSDDDDE VQNQKIRRLFTGHLANSKRGRSLNYTEMILLKRFVSGKSIQQITKIDNIDIKKIYVYKLR LEDKLGHSIHQILSNIL >gi|283548475|gb|GG730302.1| GENE 359 372382 - 372999 397 205 aa, chain + ## HITS:1 COG:no KEGG:CKO_04227 NR:ns ## KEGG: CKO_04227 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 199 32 227 233 128 34.0 1e-28 MTVGWGERNNVTTANTFYQAILTLRNALADVGLPRDTVKTISRRGLRLNENTQVEAITDL QSDVSPLSVIEERAPAKIIPTAPQQPTQIAWWNILFSVGIVIATLVIWLVWYQTRPVMPF SKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLHPFLCENNKHVFLTGYLKAERMVA FVCDKDARTDAHAFCTTHYYWMRGQ >gi|283548475|gb|GG730302.1| GENE 360 372996 - 373460 232 154 aa, chain + ## HITS:1 COG:no KEGG:CKO_04226 NR:ns ## KEGG: CKO_04226 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 21 152 20 153 153 79 29.0 4e-14 MKKTRHLILLTIGLVTLLGSGGWLWYSRYAESPLNCVGNVEWNIGSNRFAGTVSFRMYNQ EGLSTITGKLYGRNTSDISRNIYFSYTQQRDARVLQAMQVVKTFADTADEADINNTLPGF YRQTGRSLSLVMEEYKGAWIFASSNVPSLYCRKR >gi|283548475|gb|GG730302.1| GENE 361 373802 - 375298 1758 498 aa, chain + ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 6 482 2 475 489 467 48.0 1e-131 MFTFKKCLIALSINLAVVSSGFACTTLLVGNEASADGSMFVARSADSDALKAQHFVIHPA KQNQTGVYSTRAHNGANDFTWPLPKNSLRYTTVPNWKTQVHGATGFNELGVGVSGTESIF ASPKALAADPYVEDKGITEDDIPDILLSQSKTAREAVALLGHIVETVGAGEGFGVAVVDD NEIWYLETGSGHQWMAQRLPNNQYFATGNQGRLQDYDPKNPDMMASKNLIQFATEKGLYN PAKDGKFNFSKAYTRDDERDRTYNDPRVWTIQKEFNPSVNQDMAKGREFPVFMKPEKKMT LDDVKAVLRSHYEGTSHDPYTNGLNGKEPWRPVSVFRTYEAHVMQVRPWLPKEIGETTYI GLGMADLTAFVPYYSGLKAYPANYTMGTDKADDQSIYWKYRKLQTLTMTDYPKLAPIVKK AYKAWEDKVAKEQKEVEAEYLKMAKTNKPAADKMLNDFNLRIMADAEKLTEDLTNQLFTI RTKDIQSDIFFANAAKKD >gi|283548475|gb|GG730302.1| GENE 362 375335 - 376237 727 300 aa, chain - ## HITS:1 COG:PA3565 KEGG:ns NR:ns ## COG: PA3565 COG0583 # Protein_GI_number: 15598761 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 1 297 1 297 306 305 51.0 6e-83 MFRLEDLTLFVRAAALNSFSDAAREVGVQPAQVSSAIKRLESTLSIRLFARSTRSLRLTP EGEVWLPYARQMLDVMHAGLQKIQTPEDEVSGTLQIAVPSDLGRNLLLPVFQSFRRRYPA LRLRIFFSDQVTDVFKDPVDVAFRYGNTEDASYIALPVAPGNRRVLVASPDWVLQNGAPQ TPDDLAQLNAMTFVLRGRLHDRWAFTRGGEVSSVQVNGTIMSDDAEVIRRLAIAGEGIAY KSWLDVSEDVREGRLQLLMTDYQGEKVPLNMICPHRKQLSTAVRLLHDAVKARCEMLAQS >gi|283548475|gb|GG730302.1| GENE 363 376342 - 377349 1157 335 aa, chain + ## HITS:1 COG:PA3567 KEGG:ns NR:ns ## COG: PA3567 COG0604 # Protein_GI_number: 15598763 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Pseudomonas aeruginosa # 19 335 18 337 337 400 65.0 1e-111 MKAIAITRAATHGNNIEFLQEIDLPVPVATGHDLLVEVKAISVNPVDTKVREGFNADVPR VLGWDAVGVVKSVGEAVTLFSPGDEVWYAGALGRAGSNSEFQLVDERITALKPRSLDNAS AAALPLTAITAWELLFDRLGIEENGNEDDVLLIVGAAGGVGSILTQLASKLTNMTVIGTA SRPESQKWVREVGAHHVIDHGKPLTEELTRIGIKEVTHVASLNNTEQHYPQIIAALAPQG KLALIDDPQTLDARPLKAKSISLHWEFMFTRSMFTTHDITAQHQLLTRVAQLIDNNTIRT TLGEHFGAIAAANLQKAHAQIETGRSVGKIVLEGF >gi|283548475|gb|GG730302.1| GENE 364 377351 - 377656 471 101 aa, chain + ## HITS:1 COG:PA3566 KEGG:ns NR:ns ## COG: PA3566 COG1359 # Protein_GI_number: 15598762 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 7 96 5 93 97 62 37.0 2e-10 MPDAEVISIIAVLKARPGKIDALKRALQALLLPTRREPGNIEYALFQLRNTPDVFYVRES WRGQAGLDEHIALPHFQGFILQMNDLLAEPLRLDYLTPIEP >gi|283548475|gb|GG730302.1| GENE 365 377698 - 378474 187 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 8 250 4 238 242 76 28 1e-12 MSALFAGKKLLVVGGTSGMGFETAKLILQGGGRVVLVGNRADKAEQARQALATLGDVTIV VADLMSEAGMKQVMATVNAGHKDISLLVNAAGVFFPKPFIEHEVEDYELYMSLNRATFFI TRDVVRNMAAAHIKGAIVNIGSMWAQQAIGATPSSAYSMAKAGLHALTKNLAIELGANGI RVNAVSPAVVNTPIYEGFIPKEDVQGVMSSFDSFHPIGRVGTPPDVAETVAFLLSDKAGW VTGAVWDVDGGVMAGRNA >gi|283548475|gb|GG730302.1| GENE 366 378608 - 379564 851 318 aa, chain + ## HITS:1 COG:RSp0434 KEGG:ns NR:ns ## COG: RSp0434 COG0583 # Protein_GI_number: 17548655 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Ralstonia solanacearum # 5 305 1 303 304 201 39.0 2e-51 MEKQMRSLNRLKWLHAFEATARHGSFTGAAQELGVTPAAVGQLVRALEDWVGHPLLHRTR SGKERLTLVSEAQEALREITQGLDNLESGLNKLRGRRARSVVIITASQVLVMNWLMSRLN RFSQTHENIELRLNVTEKLMDVAHGEADLGVRCGKGDWPGVNKTWLMDEEAVLVCSPRIV PVDKIACGEWLAAQKLIHDDTPHPGAHFPAWDDVLSTTHAPTVRDSGLHINSTSAVILAA LSGQGVAIVRRALVQQLLTDGQLVRLHPDTRWPLTWSYYIVTPQHAVMRPEVKVFNDWLI ADVLAEIAAASAMMPAHR >gi|283548475|gb|GG730302.1| GENE 367 379590 - 380492 933 300 aa, chain + ## HITS:1 COG:ECs4594 KEGG:ns NR:ns ## COG: ECs4594 COG0697 # Protein_GI_number: 15833848 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Escherichia coli O157:H7 # 1 300 1 300 307 451 93.0 1e-127 MGSTRRGMMNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRLIFAGLILLMLSFVHGD KVFSILKNRKDAISLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFSVV RKSRPGILVLTAILTSLIGTFLLVTHGNPTSLSISPAALFWGIASAFAAAFYTTFPSTLI ARYGTLPVVGWSMLIGGMILLPFYAGQGTHFVVNGSLILAFFYLVVIGTSLTFSLYLKGA QMIGGPKASILSCAEPLSSALLSLLLLGITFTLPDWLGTMLILSSVVLISMDSRRRARAV >gi|283548475|gb|GG730302.1| GENE 368 380519 - 381337 969 272 aa, chain - ## HITS:1 COG:nlpA KEGG:ns NR:ns ## COG: nlpA COG1464 # Protein_GI_number: 16131531 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Escherichia coli K12 # 24 272 24 272 272 465 93.0 1e-131 MKLKIPYFGAGAAVLLAGLLLAGCDRQSNDAKHIKVGVINGAEQDVAEVAKKVAKEKYGL DVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNKAHNYKLVAVGNTFVFPMAGYSK KIKTVAELKDGATIAIPNDPTNLGRALLLLQKEKLITLKEGTGLLPTALDITDNPRHLNI MELEGAQLPRVLDDPKVDAAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVTREDNKD AGNVKEFLQSYQSPEVAKAAETIFNGGAVPGW >gi|283548475|gb|GG730302.1| GENE 369 381462 - 382412 394 316 aa, chain - ## HITS:1 COG:STM3766 KEGG:ns NR:ns ## COG: STM3766 COG5464 # Protein_GI_number: 16767050 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 313 1 310 313 434 71.0 1e-122 MKKNTTSTPHDAVFKKFLSHPETARDFLDTYLPAPLRELCDLNTLKLESGSFIEEDLRAS YSDVLWSLKTRTGKGYIYALIEHQSSPDAHMAFRMMRYAIAAMQNHLDAGHKKLPLVVPI LFYHGVASPYPFSLCWLDEFDDPETARQLYGAAFPLVDITVVSDDEIMQHRRMALLELVQ KHIRERDLMVLVDKLVALLIKGHANDSQVETLFNYLVQSGSAPRFEAFIRKVALRVPQHK ERLMTIAECLRESGRRTGHRSGLQEGLQKGLLEGKLEGKKDEALRIAHAMLEKGLDRELV LIVTGLSLDELTAHSD >gi|283548475|gb|GG730302.1| GENE 370 382652 - 383395 684 247 aa, chain - ## HITS:1 COG:no KEGG:SeSA_A3974 NR:ns ## KEGG: SeSA_A3974 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Schwarzengrund # Pathway: not_defined # 1 247 1 247 247 405 91.0 1e-112 MQQINFYRNKVAINVLAKDIANAREIYDAAEGHAVIGVLSAQFASVEEGVREVKRWMTDV PSISVGLGAGDPAQYYKAAMIASAVHPAHVNQTFTGCGFAAGALAATGGEQTHINALVSP TGTPGEVLISTSVSSSQGTPARVSCDAAVRMMLDSGAHAAKFFPMGGEKSLPELYALATT AARNGMTLIEPTGGIDLDNFGIILKTCLEAGVPRVMPHVYSSIIDPQTGNTRPEDVARLM EIVKDMV >gi|283548475|gb|GG730302.1| GENE 371 383382 - 384491 1017 369 aa, chain - ## HITS:1 COG:STM3768 KEGG:ns NR:ns ## COG: STM3768 COG1921 # Protein_GI_number: 16767052 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine synthase [seryl-tRNASer selenium transferase] # Organism: Salmonella typhimurium LT2 # 1 369 1 369 369 589 88.0 1e-168 MTQNIYQQLGLKQVINACGKMTILGVSSVAPEVMQATARAASAFVEIDRLVDRTGELVSR YTGAEDSYVTSCASAGIAISVAAAITRGDQARVTLMPDSSGMANEVVMLRGHNVDYGAPI TSAIRLGGGRVVEVGSSNLAARWQLESAITDNTAALLYVKSHHCVQKGMLSIADFVQVAQ VHNLPLIVDAAAEEDLHAWVASGADMVVYSGAKAFNAPTSGFITGKKQWIAACKAQHHGI ARAMKIGKENMVGLVYALENYHQGQSVVTAEQLQPVAEAISAIHGLDADIEQDEAGRAIW RIRIRVNAQALGLDAYAVEAQLRGGDIAIYARRYNLHQGVFSLDPRTVAEGEMALIVARL KEIADHAAD >gi|283548475|gb|GG730302.1| GENE 372 384495 - 385352 1066 285 aa, chain - ## HITS:1 COG:STM3769 KEGG:ns NR:ns ## COG: STM3769 COG3716 # Protein_GI_number: 16767053 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Salmonella typhimurium LT2 # 1 285 2 286 286 513 97.0 1e-145 MSSDVMQHELVERARESGALTKADITKAWFIYWLGAEVSSSYERLQSLIFCASMTPIIKK LYPQKEEQVEALKRHLNFFNSEQTFGAVIQGISIAMEEQKTRGEPISDASITGIKTGLMG PLAGMGDSIIWAAVMPLLIAIFIPFAANGSAMGGIVPLILYPAITLAISYGMVHKGYSLG RDSIIGLLQGGRIKELIYGANVLGLIMMGALSASYVKITTPLKLSALKGSEVVVQQILDS IAPGLLPLAAVFAIYFYLVKKGPRYTTILLSIVALSVVCSLLGVL >gi|283548475|gb|GG730302.1| GENE 373 385352 - 386101 1138 249 aa, chain - ## HITS:1 COG:STM3770 KEGG:ns NR:ns ## COG: STM3770 COG3715 # Protein_GI_number: 16767054 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Salmonella typhimurium LT2 # 1 249 1 249 249 433 99.0 1e-121 MDTLVFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLGNMQTAMIIGAGMQLVY LGVTSTPGGNVPSDPALAACISIPIAVKAGMDPNLAIALAIPFGVIGVFLDQLRRTLNAA WVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAANYFGQDVVESFLKLMPHWLT HSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAVLYLKVDIMAMAIFGTCVAFLIK GLAKNEGAA >gi|283548475|gb|GG730302.1| GENE 374 386127 - 386612 738 161 aa, chain - ## HITS:1 COG:STM3771 KEGG:ns NR:ns ## COG: STM3771 COG3444 # Protein_GI_number: 16767055 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Salmonella typhimurium LT2 # 1 161 1 161 161 306 95.0 9e-84 MANIVLCRIDSRLIHGQVVTKWVGQSQANRIAVVSDELDADPFMKNIYLMAAPPNIKVDC FGNQSFAAAWKENQLGDGKVLVLFPSLAAVQEAVQLGFDVTAIQVGGLGGGPNRKAVFQN ITLDEKDVGILSDLKNRGIQVFFQTIPEDKPQSLDDILKKF >gi|283548475|gb|GG730302.1| GENE 375 386625 - 387050 414 141 aa, chain - ## HITS:1 COG:STM3772 KEGG:ns NR:ns ## COG: STM3772 COG2893 # Protein_GI_number: 16767056 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Salmonella typhimurium LT2 # 1 140 1 140 141 237 89.0 5e-63 MTTTESLPQILLLTHGGWGQQLCNSLRMVMGEIKGVTEIALMPVDTLGEFYQRVEAVVKT MPEGSLILTDFIGGTTSNVAARLSADYPVAVISGLNASLLLEALDKREHGQLTTCVADLV DAGRSSCLDVVAHVRQLQQSQ >gi|283548475|gb|GG730302.1| GENE 376 387264 - 390062 2608 932 aa, chain - ## HITS:1 COG:STM3773_2 KEGG:ns NR:ns ## COG: STM3773_2 COG3933 # Protein_GI_number: 16767057 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Salmonella typhimurium LT2 # 461 932 1 472 472 897 94.0 0 MRRIEIILGELERLTRGLNLAHLAQETAFTAEAIGFNLGLARNSVSKDLNQLWNDGLAIK SRGRPVFFLHRQAIETLLGRKLDESEREVQTVADLLPVQEDQAADDPFFGLIGYDRSLRD AVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACDRATGTPPPLVYFNCAEYAHN PELLSSHLFGHRQGAFTGANENKPGLVEQADGGYLLLDEVHRLPYEGQEKLFSILDKGEY RPLGSSAVARSISVRLICATTEPVSSALLRTFQRRIQVCIDLPGIRQRSVEEQVELIVGF LQRESRKIERTISIDRTLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGMTEHSDTLQLD KRLAEMPFNATPEQRLLVGTLFEGKEHLSIDARTLPALKNSLATGAEIEESDLFYSFLTR EYINLRNSNVPPAETLAILKNKLSSIFEYGLYSRDSVAHPPRYGDQIEERVTLLIGCVEQ VLGFTLPENLVNPLRKHFLALIGYVQRGLIPQLYSSSLILDRCKDEYENASLLCRKINEL LHIQCPATEVVWLCLFLKECRHYRQRIDASPDCGVILIAHGATTATSQAQYVNRVLEREL FSAIDMPFEQSVHDTLEALTQVIQARQYRRLILMVDIGSLVHFGSTISKLFQIDVLLMPN ITLTSLLEIGLDLSYETSDLPQLAALMQSKNIPCQLCTPQQENSGKVLVISCITGMGTAE KIKKVLEESFGELMSQDTRMVILDYNEVRSLERVQQAINASERLAGIVGTFQPGLPDIPF ISLEELFSEQGPELVLSLLTPDLSSSERRLEMERSAMRFISALTMESIINHISVLNPQRI LKEMEGVLNHLTTALSLKPSRQVTLRFLIHCCCMVERIVINRKPLQMALENRPDLDVRAF SVIKSAFLPIEEAYAIRLSDAEYIYIYELLYS >gi|283548475|gb|GG730302.1| GENE 377 390189 - 390482 395 97 aa, chain + ## HITS:1 COG:no KEGG:STM3774 NR:ns ## KEGG: STM3774 # Name: not_defined # Def: inner membrane protein # Organism: S.typhimurium # Pathway: not_defined # 1 97 1 97 97 135 62.0 6e-31 MKQAIFPLIAVLFTLPGLAQADSAYGGLQAVHEKNTVMKDLRKICTPQGSPSDEVWEKTI MADTRNQQHIREAILAIQRNNQNNYWEALGKVECPDL >gi|283548475|gb|GG730302.1| GENE 378 390576 - 390677 77 33 aa, chain + ## HITS:1 COG:STM3775 KEGG:ns NR:ns ## COG: STM3775 COG2723 # Protein_GI_number: 16767059 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Salmonella typhimurium LT2 # 1 33 1 33 460 72 96.0 1e-13 MRYRFPENFWWGSACSALQTEGDSLNGGKSQTT >gi|283548475|gb|GG730302.1| GENE 379 390681 - 391958 1266 425 aa, chain + ## HITS:1 COG:STM3775 KEGG:ns NR:ns ## COG: STM3775 COG2723 # Protein_GI_number: 16767059 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Salmonella typhimurium LT2 # 1 425 36 460 460 827 90.0 0 MWFDRQPGRFHQGVGPANTSGFYQHWKQDIALLKQLKHNSFRTSLSWSRLIPDGTGEVNP EAVDFYNNVLDELLAQGITPFITLFHFDMPMVMQEKGGWESREVVEAFGRYAQTCFKLFG NRVKHWFTFNEPIVPVEGGYLYDFHYPNVVDFKRAATVAYHTVLAHATAVRAYRDANHDG EIGVVLNLTPSYPRSQHLADVKAAHHADLLFNRSFLDPVLKGEYPADLVALLKEYDQLPA CQPGDAQLIADGKIDLLGINYYQPRRVKCRDTAVNPNAPFMPEWLFDYYEMPGRKMNPYR GWEIYEPGIYDIITNLRDNYGNPRCFISENGMGVENEQRFIQEGQVNDSYRIEFVSGHLK WLHKGISEGCNCLGYHMWTFIDNWSWLNGYKNRYGFVQLDLDTQKRTVKKSGEWFAHTAE NNGFD >gi|283548475|gb|GG730302.1| GENE 380 392015 - 393199 1365 394 aa, chain - ## HITS:1 COG:yicM KEGG:ns NR:ns ## COG: yicM COG2814 # Protein_GI_number: 16131532 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Escherichia coli K12 # 1 394 56 449 451 594 87.0 1e-170 MSDAVEQKSRAEANVRPNWSAVFAVAFCVACLITVEFLPVSLLTPMAQDLGISEGVAGQS VTVTAFVAMFASLFVTQIIQATDRRYVVILFSVLLTLSCLLVSFANSFTLLLIGRACLGL ALGGFWAMSASLTMRLVPARTVPKALSVIFGAVSIALVIAAPLGSFLGGIIGWRNVFNAA AVMGVLCTIWVVRALPSLPGEPSHHKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIR PVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSVILKRSVKLALAGAPLVLALSALVLIL WGSDKVVAAGIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSVQVAVIQLANTCGAAVG GYALDNLGLLSPLMLSGSLMLLTALLVTMKVRIQ >gi|283548475|gb|GG730302.1| GENE 381 393320 - 393619 337 99 aa, chain - ## HITS:1 COG:YPPCP1.08c KEGG:ns NR:ns ## COG: YPPCP1.08c COG1396 # Protein_GI_number: 16082687 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Yersinia pestis # 1 99 1 99 99 97 57.0 5e-21 MATLKELMAKQSPESQERIAEKVEVLRQAVALNMLREELNLSQAELASAMGVKQPTIAKM EQADNDPRLSTLKRYVAALGGELSIDVKLPTGKRVAFHL >gi|283548475|gb|GG730302.1| GENE 382 393628 - 393969 265 113 aa, chain - ## HITS:1 COG:YPPCP1.09c KEGG:ns NR:ns ## COG: YPPCP1.09c COG4683 # Protein_GI_number: 16082688 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 1 112 1 110 115 123 53.0 1e-28 MWDVETTDAFDKWFDVQTEALKEDMLAAMMILSEYGPQLGRPFADTVNDSVFSNMKELRV QHQGNPIRAFFAFDPSRHGIVLCAGDKTGINEKKFYKDMIKFADVEYRKHLNK >gi|283548475|gb|GG730302.1| GENE 383 394048 - 394575 577 175 aa, chain - ## HITS:1 COG:no KEGG:ECL_00043 NR:ns ## KEGG: ECL_00043 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae # Pathway: not_defined # 6 171 2 167 175 287 83.0 1e-76 MNQATQQSAIIWPEAYLPGTTDNFASNEIIVAGLSTRAVWAQLNDTTRWPTYYSNVADIR FHDDSGPELSMDARFRFTTFGFPIEAQITEYVPPSDGQAARIAWHGWAEGDATTRLDVIH AWLFEDLPGGRVRMLTQESQIGVPAQELARTLPNPMINGHQEWITGLARAASTGD >gi|283548475|gb|GG730302.1| GENE 384 394674 - 395126 493 150 aa, chain - ## HITS:1 COG:no KEGG:APECO1_2789 NR:ns ## KEGG: APECO1_2789 # Name: yicN # Def: hypothetical protein # Organism: E.coli_APEC # Pathway: not_defined # 1 150 10 159 159 260 87.0 1e-68 MIWIMLATLVVVFVVGFRVLTSGSRRAIRRLSERLGIDVVPVESMIDQMGKVQGEAFLQY LHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRLLQKARLAAPITDAQVRLALGFLR EMEPDMQELNGFQMRYNAFFQPEDGVHWLH >gi|283548475|gb|GG730302.1| GENE 385 395275 - 396666 2024 463 aa, chain - ## HITS:1 COG:ECs4603 KEGG:ns NR:ns ## COG: ECs4603 COG2271 # Protein_GI_number: 15833857 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 1 463 1 463 463 818 95.0 0 MLAFLNQVRKPTLDLPLDVRRKMWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMISTY GLSMTQLGMIGLGFSITYGVGKTVVSYYADGKNTKQFLPFMLILSAICMLGFSASMGAGS TSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGSYLGMWNISHNLGGAGAAGVAL FGANYLFDGHVIGMFIFPSIIALIVGFIGLRFGSDSPESYGLGKAEELFGEEISEEDKET EENEMTKWQIFVEYVLKNKVIWLLCFSNIFLYVVRIGIDQWSTVYAFQELKLSKEVAIQG FTLFEVGALVGTLLWGWLSDLANGRRALVACVALALIIATLGVYQHASNQYVYLASLFAL GFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYLIGDSFAKLGLGMIADGTPIFGLT GWAGTFAALDTAAIGCICLMAIVAVFEERKIRREKKIQQLKIA >gi|283548475|gb|GG730302.1| GENE 386 396808 - 398136 1638 442 aa, chain - ## HITS:1 COG:ECs4604 KEGG:ns NR:ns ## COG: ECs4604 COG2271 # Protein_GI_number: 15833858 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Escherichia coli O157:H7 # 1 438 2 439 440 759 91.0 0 MFSFLKAPANAPLITDTHEVDARYRYWRRHILTTIWLGYALFYFTRKSFNAAVPDILTSG VLTRSDIGLLATLFYITYGLSKFVSGIVSDRSNARYFMGIGLIATGVVNILFGFSTSLWA FAVLWALNAFFQGWGSPVCARLLTAWYSRTERGGWWALWNTAHNVGGALIPMVMAATALH YGWRAGMMIAGLLAIAVGMFLCWRLRDRPQAIGLPPIGDWRHDELEIAQQQEGAGLSRKE ILTRYVLLNPYIWLLSLCYVLVYVVRAAINDWGNLYMSETLGVDLVTANTAVTMFELGGF IGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTTGFFVFG PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASLSGWPLAKVMEVWHWTGFFVVIAIAA GISALLLLPFLNAQAPRDFNEA >gi|283548475|gb|GG730302.1| GENE 387 398146 - 399648 1565 500 aa, chain - ## HITS:1 COG:STM3789 KEGG:ns NR:ns ## COG: STM3789 COG3851 # Protein_GI_number: 16767073 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase, glucose-6-phosphate specific # Organism: Salmonella typhimurium LT2 # 1 500 1 500 500 783 93.0 0 MNTLCSRLITVVACFFIFSAAWFCLWSISLHLVERPELAVLLFPFGLRLGLMLQCPRGYW LVLLGAEWLMLFWLAQEVALAHLPLLTIGSVLTLLPVMLISRYRQQRDWRTLLLQGAALT AAALLQSLPWLGQGEEAWNALLLTLTGGLTLAPICLVFWHYLTSTTWLPLGPAVVSQPVN WRGRHLVWYLLLFSVSLWLQLGLPNELSRFTPFCLALPIIALAWHYGWQGALIATLMNAI ALIASQTWHDHPVDLLLSLLVQSLTGLLLGAGIQRLRELNQSLQNELARNHRLAERLLET EESVRRDVARELHDDIGQTITAIRTQAGIVQRLAPENAGVKQSGAHIEQLSLGVYDSVRR LLGRLRPRQLDDLTLEQAIRSLMREMELESRGIVSHLDWRIDESALSESQRVTLFRVCQE GLNNIVKHANASAVTLQGWLQEERLMLVIEDDGSGLPPGSNQQGFGLTGMRERITALGGS LSISCTHGTRVSVALPQRYV >gi|283548475|gb|GG730302.1| GENE 388 399645 - 400238 765 197 aa, chain - ## HITS:1 COG:ECs4606 KEGG:ns NR:ns ## COG: ECs4606 COG2197 # Protein_GI_number: 15833860 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 196 1 196 196 366 96.0 1e-101 MTTIALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGSEALAGLPGRGVQVCICDISMPDI SGLELLSQLPKGMAIIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC YLTPDIAVKLAAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL GVSNDVELARRMFDGWQ >gi|283548475|gb|GG730302.1| GENE 389 400391 - 400681 372 96 aa, chain - ## HITS:1 COG:STM3795 KEGG:ns NR:ns ## COG: STM3795 COG0440 # Protein_GI_number: 16767079 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Salmonella typhimurium LT2 # 1 96 1 96 96 175 91.0 2e-44 MQQQTHDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSRIWLLVNDDQ RLEQMISQIDKLEDVVKVARNQSDPSMFNKITVFFE >gi|283548475|gb|GG730302.1| GENE 390 400685 - 402373 2052 562 aa, chain - ## HITS:1 COG:ECs4612 KEGG:ns NR:ns ## COG: ECs4612 COG0028 # Protein_GI_number: 15833866 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Escherichia coli O157:H7 # 1 562 1 562 562 1040 93.0 0 MASSGITSKRTRFTGAEFIVHFLERQGIQVVTGIPGGSILPVYDALSQSTQIRHILARHE QGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTD AFQEVDTYGISIPITKHNYLVRHINELPQVMSDAFRIAQSGRPGPVWIDIPKDIQTAVFE IEEMPAPAEKAPAPTFSADSIRDAAAMINAAQRPVLYLGGGVINAPERVRELAEKATLPT TMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEADLLIVLGARFDDRAIGKTEQFCPN AKIIHVDIDRAELGKIKQPHVAIQADVDEVLAQLIPLIEAQPRESWHQMVADLQREFPCT IPQESDPLSHYGLINAVAACVDDSAIITTDVGQHQMWAAQAYPLNRPRQWLTSGGLGTMG FGLPAAIGAALANPDKKVLCFSGDGSLMMNIQEMATASENQLDIKIILMNNEALGLVYQQ QSLFYKQGVFAATYPGMINFMQIAAGFGLETCDLNNEADPQAALQEMINRPGPALIHVRI DAEEKVYPMVPPGAANTEMVGE >gi|283548475|gb|GG730302.1| GENE 391 403102 - 403191 76 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLVDIAILILKLIVAALQLLDAVLKYVK >gi|283548475|gb|GG730302.1| GENE 392 403315 - 404148 835 277 aa, chain + ## HITS:1 COG:STM3796A KEGG:ns NR:ns ## COG: STM3796A COG0697 # Protein_GI_number: 16767083 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 1 277 10 286 286 409 90.0 1e-114 MTLSVFCILLFAALLHASWNAIVKAGNDKLYSAIGVSGSAAIMALIFLPFAPQPSAASLP FLAVSTALQVVYTVLVAKTYQVSDMSQTYPLMRGTAPLLVAIISVLFLGDSLSLLAWVGI ATICLAILCMAFNGRSSSQRGIVLALINACFIAGYTLVDGTGVRLSETALGYTLWTFFLN GSCLLGWAMIARRREASRYLAQQWKKGILGGIGTMGSYGLALWAMTQAPLAVVAALRETS ILFGALLAWLLLKEKVAGMRLVAAAGIAVGAVLLRLS >gi|283548475|gb|GG730302.1| GENE 393 404342 - 405526 1347 394 aa, chain + ## HITS:1 COG:STM3798 KEGG:ns NR:ns ## COG: STM3798 COG0477 # Protein_GI_number: 16767084 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 394 1 394 394 572 91.0 1e-163 MKRHRSVNLLLMLVLLVAVGQMAQTIYIPAIADMARELNVREGAVQSVMAAYLLTYGLSQ LFYGPLSDRVGRRPVILAGMSIFMLATLVAITTHSLTVLIIASAIQGMGTGVGGVMARTL PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGMLDTLWNWRACYIFLLILCAGVTFSMA RWMPETRPAGAPRPRLIASYKTLFGNSSFTCYVLMLIGGLAGVAVFEVCSGVLLGAGLGL SSMVVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLVAGLMMWIPGLFDVMNVW TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLAWFSAMLPQT GQASLGLLMTLMGLLIFVCWLPLASRVSHQGQAV >gi|283548475|gb|GG730302.1| GENE 394 405453 - 406535 802 360 aa, chain - ## HITS:1 COG:no KEGG:CKO_00018 NR:ns ## KEGG: CKO_00018 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 360 1 360 360 583 85.0 1e-165 MICVRTTVLKSIVSLLLFASATVCAAQPALTAALYAQQLGVGMDVDWARTERGIREFDPL VVRDFRAKGISHVRIRVAGEPTEARLIHLRKLVEACEQYGVIPIIAYQADEYKQDPSAGN EKEVVNWWVAVAHYFGQRSPLLGFDLIYEPADKLNHNQASLNRVYDKAIRTIHAIDPQRM IFIAPRLRAAPEELPNLKLPPQSQNTVLAEWHIFPWGPLKNNGKYPWTSGTAAEKAAIRA RINTAIRWQQKTGHVSWVGGWSPGETIKNAPSAAQTAFARFMACELKKAKIPYAINADTQ FYDGEEGAWRPALEPLLTTMIAPECDKPGDKPGHHALKPPAPDATRVTPAEASTQKSAAP >gi|283548475|gb|GG730302.1| GENE 395 406614 - 407540 836 308 aa, chain - ## HITS:1 COG:STM3800 KEGG:ns NR:ns ## COG: STM3800 COG0583 # Protein_GI_number: 16767086 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 307 1 307 307 596 94.0 1e-170 MDPLREVRNRLLNGWQLSKLYTFEVAARHQSFALAADELSLSPSAVSHRINQLEDELGIQ LFVRSHRKVELTHEGKRVFWALKSSLDTLNQEILDIKNQELSGTLTVYSRPSIAQCWLVP ALGDFTRRYPSISLTMLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSP DYASRYDLAGSLVNLPHCTLLHDRQAWSNDSGTDEWHSWAQHFAVNLPTSSGIGFDRSDL AVIAAMNHIGVAMGRKRLVQKRLDSGELVAPFGDMALKCHQHYYITTLPGRQWPKIEAFI GWLQEQVK >gi|283548475|gb|GG730302.1| GENE 396 407770 - 409107 1744 445 aa, chain + ## HITS:1 COG:STM3801 KEGG:ns NR:ns ## COG: STM3801 COG2610 # Protein_GI_number: 16767087 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Salmonella typhimurium LT2 # 1 445 1 445 445 677 94.0 0 MHSQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGTMMGMGPLDMVNAIESGIG GTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGLICGITLFVEV GVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALFVANKLGADIGSVIV YGLLVGLMASLIGGPLYLKLLGNRLPFKPVPAEFSDLKVRDESTLPSLGATLFTVLLPIG LMLVKTVAELNMTKGGTVYTLLEFIGNPITAMFIAVFVAYYILGLRQHIGMGALLTHTEN GFGSIANILLIIGAGGAFNAILKSSGLADTLALILSNMHMHPILLAWLVALILHAAVGSA TVAMMGATAIVAPMLPLYPNVSPEIIAIAIGSGAIGCTIVTDSLFWLVKQYCGATLNETF KYYTTATFIASVIALACTFLLSFII >gi|283548475|gb|GG730302.1| GENE 397 409125 - 410447 1506 440 aa, chain + ## HITS:1 COG:dsdA KEGG:ns NR:ns ## COG: dsdA COG3048 # Protein_GI_number: 16130298 # Func_class: E Amino acid transport and metabolism # Function: D-serine dehydratase # Organism: Escherichia coli K12 # 1 440 1 442 442 786 90.0 0 MENIQTLIAQHPLVADLVALKETTWFNPGTTSLAEGLPYVGLTEHDVQDAHARLTRFAPY LAQAFPETAATGGIIESELAAIPAMQKRLEKAYGRHIYGELLLKKDSHLPISGSIKARGG IYEVLTHAEKLALEAGLLTTQDDYSVLLAPEFKQFFSQYSIAVGSTGNLGMSIGIMSARI GFKVTVHMSADARAWKKAKLRSHGVTVVEYEEDYGVAVEQGRKAAESDPNCFFIDDENSR TLFLGYAVAGQRLKAQFAQQGRVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCF FAEPTHSPCMLLGIYTGLHDTISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGLYT LDDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQHVCASVDYQQMHGFSAGQLNNATHLVW ATGGGMVPEAEMAQYLAKGR >gi|283548475|gb|GG730302.1| GENE 398 410460 - 411554 507 364 aa, chain - ## HITS:1 COG:STM0036 KEGG:ns NR:ns ## COG: STM0036 COG0641 # Protein_GI_number: 16763426 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Salmonella typhimurium LT2 # 1 363 10 395 396 400 49.0 1e-111 MAKPASSRCNLDCRYCFYIDKPTQPEMDDATLAAFIRQHIAAQPGPEVMFAWQGGEPTLC GIDFFRRVVTLQKRYGEGKQIHNAFQTNGILLNDEWCQFLHANGWLVGISLDGPAELHDA YRVNRSGKPTHHKVVDAIARLREHQVEFNLLVVVNSLNSQRPGQMYRYLRQLGTPFLQFI PLVEYDEKGALTAESVPPQTWGTFLNSVFDIWVREDIGRVFVQLFDSTLGVWCGHPSQMC SLSSTCGHAFALEANGDLYQCDHYVYPDFRLGNIHHTSLSELNASPRAVEFGQSKRTSLN AECQACSLLRFCHGDCPKHRDSRGKSAICGGYRAFFNHTAPHMRVMRDLLKQHRSPMELM AMLR >gi|283548475|gb|GG730302.1| GENE 399 411569 - 411931 341 120 aa, chain - ## HITS:1 COG:no KEGG:CKO_00023 NR:ns ## KEGG: CKO_00023 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 120 1 120 120 197 89.0 1e-49 MPDSRKSRRIADPGLQPERTSLAWFRTLLGYGALMALALKHNWHQAGFLFWVSIVVLAMV AIVLWRYTRSRNLMDVAHSDFSESRAVRDKFMISLAVLSLAILFAVTHVRQLIAFIGNLA >gi|283548475|gb|GG730302.1| GENE 400 411921 - 412268 511 115 aa, chain - ## HITS:1 COG:STM3805 KEGG:ns NR:ns ## COG: STM3805 COG2149 # Protein_GI_number: 16767091 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 115 1 115 115 186 96.0 7e-48 MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLC LFAGGLAIYGYLRWLRNERAMRLKEDLPYTHSLLIISLILMSVAVIVMGLVLYAG >gi|283548475|gb|GG730302.1| GENE 401 412376 - 412825 474 149 aa, chain + ## HITS:1 COG:no KEGG:ECO103_4480 NR:ns ## KEGG: ECO103_4480 # Name: yidI # Def: putative inner membrane protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 147 1 147 149 186 73.0 3e-46 MDIIAQNKCSSLGMLFGAIALILGIFHFSFGPFSAPPPALESVVAEQVSAVKKGIIAGLK GEQPPVAAKKPAADIDKILDNSGIALAIIALACAFIGGMRKENRWGIRGALIFGGGTLAF HALLFGIGLICGIILLILIFSFLNGGSPI >gi|283548475|gb|GG730302.1| GENE 402 412942 - 414435 1372 497 aa, chain - ## HITS:1 COG:yidJ KEGG:ns NR:ns ## COG: yidJ COG3119 # Protein_GI_number: 16131548 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Escherichia coli K12 # 1 497 1 497 497 955 90.0 0 MTRPNFLFIMTDTQATNMVGSYSGNPLNTNHIDSLAAEGIRFNSAYTCSPVCTPARAGLF TGIYANQSGPWTNNVAPGKNISTMGRYFKDAGYHTCYIGKWHLDGHDYFGTGECPPEWDA DYWYDGANYLAELTDQEIGLWRNGLNSVEDLLANNIDETFTWAHRISNRAVDFLHQPARD DEPFLMVVSYDEPHHPFTCPVEYLQKYQDFYYDLGAKAQDTLCDKPEHHRLWAQAMPSPV GDDGRYHHPLYFACNDFVDDQIGRVIHALTPEQRENTWVIYTSDHGEMMGAHRLISKGAA MYDDITRIPLIMRPPQGEPMQVDTPVSHIDLLPTMMALAGIEKPQILPGENILTVEKPRG VMVEFNRYEIEHDSFGGFIPVRCWVTDDWKLVLNLFTSDELYDRRNDPDELHNLIDSPQL ADVRRQMHDALLDYMDKIRDPFRTYQWSLRPWRPDAVPRWMGAFRPRPADGYSPVVRDYD TGLPTQGVKVEEKKQKF >gi|283548475|gb|GG730302.1| GENE 403 414432 - 416147 1590 571 aa, chain - ## HITS:1 COG:yidK KEGG:ns NR:ns ## COG: yidK COG4146 # Protein_GI_number: 16131549 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli K12 # 1 569 1 569 571 965 90.0 0 MNTLQILSFVGFTLLVAVITWWKVRKTDTGSQQGYFLAGRSLKAPVIAASLMLTNLSTEQ LVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLQRGIATIPDFLEERYDKTTRII IDFCFLIATGVCFLPIVLYSGALALNSLFHIGESLNISQGAAIWLLVILLGLAGIIYAVI GGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFLQGIEQLTTVHAEKLNSIGGAND PLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLSEGQKGALLTAVLKMLDPLVLVLPG LIAFHLYQDLPKADMAYPTLVNNVLPVPLVGFFGAVLFGAVISTFNGFLNSASTLFSMGI YRRIINQHAQPEQLVRVGRKFGFFIAVISVLVAPWIANAPEGLYSWMKQLNGIYNVPLVT IIIMGFFFPRIPALAAKVAMGLGIVSYITINYLVKFDFHFLYVLACTFCINVVVMLVIGA IKPRATPFKFHDAFAVDMKPWKNAKLASVGILTAMLGVYSGLAQFGGYHTQWLTILCYSI TAAVMMYLIYSSWQTRRLTAALCVSDAKDKA >gi|283548475|gb|GG730302.1| GENE 404 416314 - 417177 551 287 aa, chain + ## HITS:1 COG:yidL KEGG:ns NR:ns ## COG: yidL COG2207 # Protein_GI_number: 16131550 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 1 285 11 295 307 538 89.0 1e-153 MNGKMQSSHVKNETTYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIAN SWVAVYTVQGCGKILLKGGEHITLTGNCIIFLKPTEIQSYHCEGLVWEQYWMEFTPTSVM DIPLRQQSIIYNGDIYNQELTEVSQLITSADPMKNNLAVAFLTKIIYQWICLIYAEGKKD PQRIQIEKLIATLHASLQKRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLEL ALSLLKQEGNTVGQVADMLNFFDSFHFSKAFKHKFGYAPSAVLKHAK >gi|283548475|gb|GG730302.1| GENE 405 417228 - 418889 1875 553 aa, chain - ## HITS:1 COG:STM3807 KEGG:ns NR:ns ## COG: STM3807 COG2985 # Protein_GI_number: 16767092 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 1 553 1 553 553 952 95.0 0 MSDIALTVSVLALVAVVGLWIGNIKIRGVGFGIGGVLFGGIIVGHFVDQAGMTLSGDMLH FIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIMGGLVTAILHKIFAIPLP VVLGIFSGAVTNTPALGAGQQILRDLGTPAGIVDQMGMSYAMAYPFGICGILLTMWLMRL IFRVNVDAEAQQHESTLTNGHALIQTMNIRVENPNLNNMAIQDVPLLNSDKIICSRLKRE ETLMVPSPGTIIQMGDLLHLVGQPADLHNAQVVIGQEVDTSLSTRGTDLRVERVVVTNEK VLGKRIRDLHFKERYDVVISRLNRAGVELVASSDASLQFGDILNLVGRPSSIDAVANVVG NAQQKLQQVQMLPVFIGIGLGVLLGSIPLFIPGFPVALKLGLAGGPLIMALILGRIGSIG KLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVNTLTQGDGLSWVGYGIFITAIPLIT VGLLARIFAKMNYLTLCGMLAGSMTDPPALAFANNLHATSGAAALSYATVYPLVMFLRII TPQLLAVIFWGLG >gi|283548475|gb|GG730302.1| GENE 406 419014 - 419442 532 142 aa, chain - ## HITS:1 COG:STM3808 KEGG:ns NR:ns ## COG: STM3808 COG0071 # Protein_GI_number: 16767093 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Salmonella typhimurium LT2 # 1 142 1 142 142 261 94.0 3e-70 MRNYDLSPLLRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNHYRITLALAGFRQEDLD IQLEGTRLTVKGTPQQPEKETKWLHQGLVTQPFSLSFTLAENMEVSGASFTNGLLHIDLT RNEPETIAPQRIAISERPALNS >gi|283548475|gb|GG730302.1| GENE 407 419535 - 419948 622 137 aa, chain - ## HITS:1 COG:STM3809 KEGG:ns NR:ns ## COG: STM3809 COG0071 # Protein_GI_number: 16767094 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Salmonella typhimurium LT2 # 1 137 1 137 137 251 99.0 2e-67 MRNFDLSPLYRSAIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESE LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNGLLYID LERVIPEANKPRRIEIN >gi|283548475|gb|GG730302.1| GENE 408 420216 - 420383 72 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVALARVPGYVPSLPPVCDIMLEQPFKKAIPLHIVSVTNIFFIIVYSSVFIVFAW >gi|283548475|gb|GG730302.1| GENE 409 420325 - 420585 132 86 aa, chain + ## HITS:1 COG:ECs4628 KEGG:ns NR:ns ## COG: ECs4628 COG5645 # Protein_GI_number: 15833882 # Func_class: R General function prediction only # Function: Predicted periplasmic lipoprotein # Organism: Escherichia coli O157:H7 # 1 84 50 133 135 145 84.0 2e-35 MSHTGGKEGTYPGTRASATMISESDTNWGTKSLAILDMPFTAVLDTVLLPWDLFRKDNSV RSRVEKSEERTQATNAVIPPAKVPAP >gi|283548475|gb|GG730302.1| GENE 410 420587 - 421813 826 408 aa, chain - ## HITS:1 COG:no KEGG:SEN3627 NR:ns ## KEGG: SEN3627 # Name: yidR # Def: ATP/GTP-binding protein # Organism: S.enterica_Enteritidis # Pathway: not_defined # 1 408 1 408 408 702 83.0 0 MKQITFTPRNHQLTNINTWTPDSQWLVFDVRPSGASFTGETIERVNVQSGEVEVIYRAIQ GAHVGVVTVHPKSEQYVFIHGPENPDKTWNYDFHHRRGVIVSQAKATNLDAMDITAPYTP GALRGGSHVHVFSPNGEFVSFTYNDHVLHERSPALDLRNVGVAAPYGPVKVSGHHPREYS GSRWCVLVSQTTPTPKPGSDEINRAYEEGWVGESTLAFIGDTLSVTGEKVPELFIVDLPQ NESDWKRPGDAPLEGTETTMPAPPCGIHQRRLTFTHDRAFPGLLNQPRHWVRSNPQASDI AFLMRDDQGVAQLWLISPRGGEPRQLTRCATGIQSAFNWHPSGKWLGFVLENRIACCDAQ TGEIDFLTERHGNPPSADAVVFSPDGRQVAWMEEVEGFRQLWVTDTGR >gi|283548475|gb|GG730302.1| GENE 411 421914 - 423020 649 368 aa, chain + ## HITS:1 COG:yidS KEGG:ns NR:ns ## COG: yidS COG0644 # Protein_GI_number: 16131558 # Func_class: C Energy production and conversion # Function: Dehydrogenases (flavoproteins) # Organism: Escherichia coli K12 # 1 350 8 357 361 654 86.0 0 MEHFDVAIIGLGPAGAALARQLSGKMRVIALDKKRQCGNEGFTKPCGGLLAPDAQRSFIR DGITLPVDIIANPQIFSVKTVDVAASLTRNYQRSYININRHAFDLWMKSLIPEDVQVYHD SLCRKIWREGDKWHVIFRADGWEQQITARYLVGADGANSLVRRHLYPQHQIRKYVAIQQW FAEKHPVPFYSCIFDNDVTDCYSWSISKDGYFIFGGAYPMKDGQARFDALKAKMETFQFQ FGNPVKSEKCTVLFPSRWKDFVCGKDNAFLIGEAAGFISASSLEGISYALDSAEILKSVL IRDTRDTNLAYRNATRKLRLKLYGKILKSRILTAACIRKWIMQSGVAHIPLNQEEQPVVK SGGLIKEL >gi|283548475|gb|GG730302.1| GENE 412 423017 - 424309 1014 430 aa, chain - ## HITS:1 COG:STM3827 KEGG:ns NR:ns ## COG: STM3827 COG0477 # Protein_GI_number: 16767112 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 430 16 445 445 753 91.0 0 MDISVTAAKPGRRRYLTLIMIFITVVICYVDRANLAVASAHIQAEFGITKSEMGYVFSAF AWLYTLCQIPGGWFLDRVGSRLTYFIAIFGWSVATMFQGFATGLMSLVGLRAITGIFEAP AFPTNNRMVTSWFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEMLSWHWVFILTGAIG IVWSFIWIKVYQPPRLTKSMTEAELDYIRDGGGLVDGDASVKKDARQPLTKADWKLVFHR KLIGVYLGQFAVNSTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWLA DRLVKKGFSLGTARKTPIICGLLISTCIMGANYTNDPVWIMVLMAMAFFGNGFASITWSL ISSLAPMRLIGLTGGMFNFIGGLGGISVPLVVGYLAQYHGFAPALVYISVVALIGAMSYI LLVGDVKRVG >gi|283548475|gb|GG730302.1| GENE 413 424533 - 425681 1376 382 aa, chain - ## HITS:1 COG:STM3828 KEGG:ns NR:ns ## COG: STM3828 COG4948 # Protein_GI_number: 16767113 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Salmonella typhimurium LT2 # 1 382 1 382 382 762 96.0 0 MKITKITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAAVHEFGDYLIGQDPARI NDLWQVMYRAGFYRGGPIMMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWV GGDRPAEVIDGIKKLRGIGFDTFKLNGCEEMGVIDNSRAVDAAVNTVAQIREAFGNEIEF GLDFHGRVSAPMAKVLIKELEQYRPLFIEEPVLAEQAEYYPTLAAQTHIPIAAGERMFSR FEFKRVLEAGGLAILQPDLSHAGGITECYKIAGMAEAYDVALAPHCPLGPIALAACLHID FVSRNAVFQEQSMGIHYNKGAELLDFVKNKEDFNMEGGFFKPLMKPGLGVEIDEARVIEL SKNAPDWRNPLWRHEDGSVAEW >gi|283548475|gb|GG730302.1| GENE 414 425678 - 426295 579 205 aa, chain - ## HITS:1 COG:RSc2752 KEGG:ns NR:ns ## COG: RSc2752 COG0800 # Protein_GI_number: 17547471 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-6-phosphogluconate aldolase # Organism: Ralstonia solanacearum # 1 201 3 203 213 241 63.0 7e-64 MQWQTNLPLIAILRGVTPDEALAHVGAVIDAGFDAVEIPLNSPQWEKSIPAIVDAYGDKA LIGAGTVLKPEQVDKLAQMGCRLIVTPNIQPEVIRRAVSYGMTVCPGCATASEAFTALDA GAQALKIFPSSAFGPDYIKALKAVLPPSVPVFAVGGVTPENLAQWIDAGCAGAGLGSDLY RAGQSVERTTAQAAAFVKAYREAVK >gi|283548475|gb|GG730302.1| GENE 415 426279 - 427157 556 292 aa, chain - ## HITS:1 COG:STM3829 KEGG:ns NR:ns ## COG: STM3829 COG3734 # Protein_GI_number: 16767114 # Func_class: G Carbohydrate transport and metabolism # Function: 2-keto-3-deoxy-galactonokinase # Organism: Salmonella typhimurium LT2 # 1 292 1 292 292 465 86.0 1e-131 MTARYIAIDWGSTNLRAWLYLGDKCLESRQSEAGVTRLNGKSPAAVLAEVTQNWRASATP VVMAGMVGSNVGWKVAPYLPVPARFSAIGEQLTSVGDNIWIIPGLCVSREENHNVMRGEE TQLLGARALSPSPVYVMPGTHCKWVLADALQVHDFRTVMTGELHHLLLRHSLVGAGLPEQ ETSAGAFSAGLTRGLANPAVLPQLFEVRASHVLGTLPREQVSEFLSGLLIGAEVASMSEQ FAAGQAITLVAGSALTSRYQQAFHAIGREVSVVDGDTAFQAGIRSIAHAVAN >gi|283548475|gb|GG730302.1| GENE 416 427154 - 427843 558 229 aa, chain - ## HITS:1 COG:STM3830 KEGG:ns NR:ns ## COG: STM3830 COG2186 # Protein_GI_number: 16767115 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 411 95.0 1e-115 MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFRSLMAKRLIEM KRYRGAFVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVRNLVEPAIARWAAERANSS DLAEIESALNDMIANNQDRDAFNEADIRYHEAVLQSVHNPVLQQLSIAISSLQRAVFERT WMGDETNMPKTLQEHKALFDAIRHQDSNAAEQAALTMIASSTRRLKEIT >gi|283548475|gb|GG730302.1| GENE 417 428096 - 429238 682 380 aa, chain - ## HITS:1 COG:no KEGG:t3691 NR:ns ## KEGG: t3691 # Name: not_defined # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 2 368 4 369 375 469 64.0 1e-130 MINKVLLMTTLLLATIGVHAAIPVPLQLVNEDDKTESTAWPVVSPLPAPQGLRPCCAFGY DLHAQVLDMPVPFYELDNVVAADGIGEHRYNDSLLLGLVNLAGIGHEHNGIVYTSHGGFI DIAHVRDTADMTVWLFSHLLPQLGQPFTLRLDDELAERHIVFNAFTPPATAGDRYALAAW LAAHLAFQLAAWHEIAQWYGFESVPGFSEEVSAFSPEDLYSNLLGARIAVSLILDGQLAT SGMYDAAMNNALRQALTQLGARPEPLTRFQFDMLDGKWWNSQRRVPEKYLVLHRNYDVSD SRLPTPVPGEKAEPLRLSLPHHWRNYSLDTLAQLQLRPGSNMARLPLPQSWYTGANFPTL ATIASDSDNHDHEDNSLKNK >gi|283548475|gb|GG730302.1| GENE 418 429235 - 430365 1127 376 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B4057 NR:ns ## KEGG: SeAg_B4057 # Name: not_defined # Def: outer membrane protein # Organism: S.enterica_Agona # Pathway: not_defined # 5 376 8 379 379 615 78.0 1e-175 MTRLFLLCAFSLLGTAAQAALPSREEVDGWLQKLGASDNFNASKGIDWGVMPGPFYTPEL GLGIGTAVVGMYRPDPNDTVSQNSTLTLSGYFSSTGAFGVTMQNYAFFADDRWRFFINGA LTDTPTYYWGQGFSAGDKDSQKQQYTAQVLDLRPTLYRRVAPNVYLGLGWSLNAQHAAQM EGNDPPKIENTGQGASVLSSGSSVELSWDDRDFVPNPRQGQYADVRYTRYTPDVGSDTRF DEYQLHYSRYHSLDEKNVLAWEMDGAFTQGDVPWSMMPLLGSNQRMRGYYEGRYRDKNVV SGQLEYRRKLDWRHGVVGWLGAGTMGPSFSALDDGRWLPSAGVGYRFEFKPRVNVRLDYG IGKGSSGFYFQVGEAF >gi|283548475|gb|GG730302.1| GENE 419 430371 - 431285 1024 304 aa, chain - ## HITS:1 COG:no KEGG:SeAg_B4058 NR:ns ## KEGG: SeAg_B4058 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Agona # Pathway: not_defined # 1 304 31 340 340 500 81.0 1e-140 MYDYQDDGQAASMPVKATTKPAASHSVLPFLGDEARKRGYDLPEPFGVNINYMNIRQNIN VDSINFNGLSLGGHSLDNAFKIKVGNTRESSKTETLKLDAWLLPFMNIYGLVGYTDGHSI SQIGVGVKGARKYHYPANLQNLDFKLDFKGTTYGIGTTLVGGVGNWFTAVDANYTQTQFD ILDGSIDAFTVSPRVGYRFATPGVDTLHLPSGKLNVWVGSMYQDVQQEFKGSLNDLSMPS ATLQRMVDLANKDGNGRFDVKQHLQSPWNVLVGAQYELTRNFNITSEIGFAERNSFFVAG EYRF >gi|283548475|gb|GG730302.1| GENE 420 431555 - 432367 1095 270 aa, chain - ## HITS:1 COG:STM3831 KEGG:ns NR:ns ## COG: STM3831 COG0561 # Protein_GI_number: 16767116 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Salmonella typhimurium LT2 # 1 270 1 270 281 502 93.0 1e-142 MAIKLIAIDMDGTLLLPDHTISPAVKTAIAAARARGVNVVLTTGRPYAGVHSYLKELHME QPGDYCITYNGALVQKAGDGSTVAQTALSYDDYRYLEKLSREVGSHFHALDRNTLYTANR DISYYTVHESFVATIPLVFCEAEKMDPATQFLKVMMIDEPEILDKAISRIPADVKEKYTV LKSAPYFLEILDKRVNKGTGVKSLADALGIKAEEVMAIGDQENDIAMIEYAGVGVAMDNA IPTVKEIANFVTKSNLEDGVAWAIEKYVLS >gi|283548475|gb|GG730302.1| GENE 421 432642 - 432794 84 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMIMYISLFSKKQLLYLSRKTLNYMKNIIKLTKFIHIFTHKIFGAFYCFM >gi|283548475|gb|GG730302.1| GENE 422 432913 - 434169 686 418 aa, chain + ## HITS:1 COG:STM3134 KEGG:ns NR:ns ## COG: STM3134 COG0477 # Protein_GI_number: 16766434 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 417 1 426 434 405 48.0 1e-113 MKIKNLRWYIIVLVMLGTMTNYLARSTLGVAAPEMMKTLGLSSEQYSWIVSVFPFTYAIG GIACGFIIDKFGLRLSFALLAALWSIFNMLTGLCSTWLPMAWLRGGLGLTEAAFNPAGMK VTAEWFPAKERGLACGVYSLGTSVGAMLAPPLVVWAIVNYNWEMSFVVTGAIGIVWAGIW YIFYRSPEQHPALIKSEHEAVLADQIEVVKEKATLRSIITNRNLWAISFPRFMADPAWGT LHYWMPLYLVTVRHMDMAHIAMFAWLPFLTADFGCIFAGYLSRILVNRGFCVLNAKRITF TFAAILMLSMAGVGFVTDVYVAIALFCVAGFAHQCLSITVISMSSDLFPKEEVGTATGFA AFIGSMGNFLFGLFLGAMVAVIGYNAFFVGLGIFDLVGALFLWFMIKNPKKNMQPITA >gi|283548475|gb|GG730302.1| GENE 423 434201 - 434899 537 232 aa, chain + ## HITS:1 COG:no KEGG:Kvar_4640 NR:ns ## KEGG: Kvar_4640 # Name: not_defined # Def: oligogalacturonate-specific porin # Organism: K.variicola # Pathway: not_defined # 3 231 2 250 250 195 43.0 1e-48 MKRTALVLAVCCTPLASHAMTFDMRGGYKEASHTYESRFKMSQSFQSGYWLSMETDNKQG NDNYDQSTTDYNEIEGNYKYKLNPALAIQPGMVYHWSSAGTQIRPYVKFIWNMTDSVYSG IRFRYDWNQYDSVDLSGNMDKGSVERVDLYFGWQNEKWNIQDNPVFYRYVNDFHYNNGKK SSYENDLVIKYKLNKTWQPYVEWDYMEQQGKYDGESGLTENRFRVGLTINFE >gi|283548475|gb|GG730302.1| GENE 424 434965 - 436137 806 390 aa, chain + ## HITS:1 COG:no KEGG:Entcl_3095 NR:ns ## KEGG: Entcl_3095 # Name: not_defined # Def: hypothetical protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 11 390 31 410 410 536 68.0 1e-151 MQDYSVAAQQDPCLTYDCGQMLSIKQSISRHDAQYIPAWQALLQQADAALSHPVYSVTDK TLTPASGNKHDYYSFGPYWWPNPDGKDGMPYIRKDGQINPEAKTNGTDSKRMVQFSDDVR TLALAWFYSGEDKYAKKAQQLLQAWFLDSKTRMNPNLNYAQAIPGKVDGRGIGIIDTRVL IDVADSIVLLESSGHIPPNSLAGYKKWYADYTQWLLTSRNGFEEANWYNNHGAWYDAQVT AFSLFTGQHDQASKQVEIFKLRHLISQVNAAGEIASEIERTRSFHYTNFALSAYAHMGRY GEKLHNDVWGFELDNRTMKKAFALVSKQTGNPQTAWPHEDIHYTPSEATGPLLAAARAYQ DTEFVNNAAILKKENSKDINILTPGSVLVK >gi|283548475|gb|GG730302.1| GENE 425 436148 - 438091 578 647 aa, chain + ## HITS:1 COG:no KEGG:Entcl_3096 NR:ns ## KEGG: Entcl_3096 # Name: not_defined # Def: heparinase II/III family protein # Organism: E.cloacae_SCF1 # Pathway: not_defined # 1 630 1 633 644 866 63.0 0 MKQFTQSQILQARERVTPEMIEVLIANNRDVISNPILVPETGCATWNHYFFCPEHSVRLI WDRHSPEVHRCPIDNAHFSGEPYDGAWWRWLNGLNAKACYELAILWLLTDEVQYLSKVRD ILMLYAKYYPDYQEHGGIPYNGPGKANAQTLCEANCHTDFARGFDIIRAQLTLEEDRYIA ERLLRVGADFLMQHRCAQIHNHEVKINSAIGIIGAVLDDKTYLEFAVNSQYGLQYQLEHA LMPDGLWFEGSLHYHFYALQGFFSYEKVASGSGYSLLESTWYPKMLSVPLTQLMPDMTLA KINDCVNGQEKLTHTDIYEFAWWYYGTPEYGQLLKQIYSQHPRNSIDALFYGKPLPSLSL LPPPETLHTPESGLTIIRNKPGRAICIKHTPYGGEHDHYDRLGLTVFNNGRAIFPDLGTT GYGAPLHYGYYKNSFSHNTLCINGKNQAPANPYVVSYNKEHDTVRLITEVEWKSEQIFPD SKTRVEWDEDAYKDVVFRRSITAKDDLLIDICTIDNPHEQEINTSYLINAEPRDAEYCNS LFPHIMAVDAVNLHTPVKLRWQSPDKFTLYCLSAGNSVLFQGKGPNNPSTSELTYLTMRS KEKRVIHITVTDLSGDDDILMKIENDCLIVTVNGVAAHCIPLGQEMS >gi|283548475|gb|GG730302.1| GENE 426 438168 - 440582 3193 804 aa, chain - ## HITS:1 COG:STM3835 KEGG:ns NR:ns ## COG: STM3835 COG0187 # Protein_GI_number: 16767120 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Salmonella typhimurium LT2 # 1 804 1 804 804 1536 96.0 0 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETEVTGTQVRFWPSHETFTNVT EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEY LLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRMERR FPKALLKELVYQPTLPEADLANEQNVTRWVNALITELNEKEQHGSLWKFDVHHNAEQNLF EPIVRVRTHGVDTDYVLDHEFVTGGEYHRICTLGEKLRGLIEDDAFIERGERRQPVASFE QALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL MGDAVEPRRAFIEENALKAANIDI >gi|283548475|gb|GG730302.1| GENE 427 440611 - 441684 1018 357 aa, chain - ## HITS:1 COG:STM3836 KEGG:ns NR:ns ## COG: STM3836 COG1195 # Protein_GI_number: 16767121 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Salmonella typhimurium LT2 # 1 357 1 357 357 697 97.0 0 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV IRHEQESFVLHGRLQGEERETSIGLTKDKLGDSKVRIDGTDGHKVAELAHLMPMQLITPE GFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPWDKE LIPLAEQISTWRAEYSAGIAQDMADTCQQFLPEFSLSFSFQRGWEKETDYAEVLERSFER DRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL IDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD >gi|283548475|gb|GG730302.1| GENE 428 441823 - 442923 1160 366 aa, chain - ## HITS:1 COG:ECs4636 KEGG:ns NR:ns ## COG: ECs4636 COG0592 # Protein_GI_number: 15833890 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Escherichia coli O157:H7 # 1 366 1 366 366 715 96.0 0 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALI QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC SMPVGQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE EAEEILDVSYPGTELEIGFNVSYVLDVLNALKCENVRIMLTDSVSSVQIEDAASQSAAYV VMPMRL >gi|283548475|gb|GG730302.1| GENE 429 442928 - 444331 1323 467 aa, chain - ## HITS:1 COG:STM3838 KEGG:ns NR:ns ## COG: STM3838 COG0593 # Protein_GI_number: 16767123 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Salmonella typhimurium LT2 # 1 467 1 466 466 913 97.0 0 MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNIN GLLNNFCGADAPQLRFEVGTKPVTQTLKTPVNNVVAPAHVAQQVQPQRTAPAARPGWDNV PAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTH LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE TRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVR EALRDLLALQEKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNH SLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS >gi|283548475|gb|GG730302.1| GENE 430 444937 - 445077 229 46 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|188535563|ref|YP_001909360.1| 50S ribosomal protein L34 [Erwinia tasmaniensis Et1/99] # 1 46 1 46 46 92 100 2e-17 MKRTFQPSVLKRNRSHGFRARMANKNGRQVLARRRAKGRSRLTVSK >gi|283548475|gb|GG730302.1| GENE 431 445128 - 445454 223 108 aa, chain + ## HITS:1 COG:STM3840 KEGG:ns NR:ns ## COG: STM3840 COG0594 # Protein_GI_number: 16767125 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Salmonella typhimurium LT2 # 1 108 12 119 119 190 97.0 5e-49 MLTPTHFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLTVAKKNVKRAHERNRIKRLTRE SFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHCRLARGS >gi|283548475|gb|GG730302.1| GENE 432 445678 - 447324 2059 548 aa, chain + ## HITS:1 COG:STM3842 KEGG:ns NR:ns ## COG: STM3842 COG0706 # Protein_GI_number: 16767127 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Salmonella typhimurium LT2 # 1 548 1 548 548 1046 96.0 0 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL ITVKTDVLDLTINTRGGDVEQASLPAYPKELGSTEPFQLLETTPQFIYQAQSGLTGRDGP DNPANGPRPLYNVEKDAFVLADGQNELQIPMTYTDAAGNTFTKTFVLKRGEYAVNVNYSV QNAGEKPLEISTFGQLKQSINLPSHRDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAE NENLNVNAKDGWVAMLQQYFATAWVPRNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT GAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFLGNWGFSIIV ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPL GGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGVTMFFIQK MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL HSREKKNS >gi|283548475|gb|GG730302.1| GENE 433 447430 - 448794 1716 454 aa, chain + ## HITS:1 COG:thdF KEGG:ns NR:ns ## COG: thdF COG0486 # Protein_GI_number: 16131574 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 454 1 454 454 839 96.0 0 MSHNDTIVAQATPPGRGGVGILRISGLKAREVAETVLGKLPKPRYADYLPFKDADGSSLD QGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSERAFLNDK LDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEE IDFLSDGKIEAQLNSVIGDLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGRE AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDEVERIGIERAWQEIEQADRVL FMVDGTTTDAVDPANIWPDFIARLPAKLPITVVRNKADITGETLGLSEVNGHSLVRLSAR TGEGVDVLRNHLKQSMGFETNMEGGFLARRRHLQALAEAAEHLEQGKAQLLGAWAGELLA EELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK >gi|283548475|gb|GG730302.1| GENE 434 449037 - 450158 1157 373 aa, chain + ## HITS:1 COG:STM3847 KEGG:ns NR:ns ## COG: STM3847 COG0477 # Protein_GI_number: 16767131 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 372 21 394 395 518 80.0 1e-147 MYLVGLPRIAADLQASEAQLHIAFSVYLAGMATAMLFAGKVADQSGRKPVAIVGALIFIF ASALCSFAESGTPFLVGRFIQGVGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIVP VLAPVMGHLIMLKYPWQSLFYTMIGMGVVVCLLSVFILRESRPATLPASEQRHPSSESLV NRFFLSRLAITTLSVSVILTFVNTSPVLLMEVMGFDRGEYATTMAMTAGISMAVSFSTPF ALSVFKPRVLMLTSQTLFLAAGVVLTLASSHMVTLFGLTLICAGFSVGFGVAMSQALGPF SLRAGVASSALGIAQVCGSSLWIWLAAVLGLDALNMLIGILIGCSIVSIMLIITVAPNRS APTHEEIPQQSRS >gi|283548475|gb|GG730302.1| GENE 435 450127 - 451086 875 319 aa, chain + ## HITS:1 COG:STM3848 KEGG:ns NR:ns ## COG: STM3848 COG0583 # Protein_GI_number: 16767132 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 316 1 316 319 514 86.0 1e-145 MKKSLSSLDLNLLLCLQLLMQERSVTKTAKRMNVTPSAVSKSLSKLRTWFDDPLFVNTPL GLTPTPLMVSMEQNLAEWMQMGNQLLDKPHHEAPRGLKFDLVAETPLVMIMFNALSRQIY QRYPQATIKIRNWDYDSLDAIIRGEVDIGFTGRESHPRSRELLSLLPLSIDHEVLFSDLP CVWLREDHPALQEEWNLDTFLRYPHISISWEQSDTWALDDVLQEMGRARNIALCLPGFEQ SLFMAAQPDHALIATAPVYCQRYNQLHQLPLVARPMPFDAAQLEKMRVPFTLLWHKRNSH NPKIVWLKETIKSLYRDIS >gi|283548475|gb|GG730302.1| GENE 436 451253 - 451999 430 248 aa, chain + ## HITS:1 COG:STM3849 KEGG:ns NR:ns ## COG: STM3849 COG2091 # Protein_GI_number: 16767133 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Salmonella typhimurium LT2 # 1 248 1 248 251 436 85.0 1e-122 MATHFARGILTEGHLVSARLPSPCHIEARNLPAHRRTRFLASRSLLAELMFMLYGTSMLP EIVTQAKGKPAFRDKNLPGFSVSYAGNIVGVALTTEGVCGLDMELQRATRGFHNPNSAET WRFSSNENLWINNQNDPNEARAQLITLRQSVLKLTGDVCNDDPRELQLLPGAGRLKCAHV AQVEAICDAEDVLVWSVAVTPTIEKLKVWEFDGKQDWKSLPDIQTRANEPTGRLIRFSQL CAAKSHTL >gi|283548475|gb|GG730302.1| GENE 437 452030 - 452596 529 188 aa, chain + ## HITS:1 COG:STM3850 KEGG:ns NR:ns ## COG: STM3850 COG0431 # Protein_GI_number: 16767134 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Salmonella typhimurium LT2 # 1 188 7 194 194 350 93.0 1e-96 MSETLNVVTLLGSLRKGSFNGMVARTLPKIAPAGMEVNALPSIGDIPLYDADLQQEEGFP ASVEALAEQIRKADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLSGKPVLIQTSSMGA IGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQTGEVIDQSTLDHLTGQLTAFG DYIQRVKA >gi|283548475|gb|GG730302.1| GENE 438 452653 - 453990 1891 445 aa, chain - ## HITS:1 COG:STM3851 KEGG:ns NR:ns ## COG: STM3851 COG2252 # Protein_GI_number: 16767135 # Func_class: R General function prediction only # Function: Permeases # Organism: Salmonella typhimurium LT2 # 1 445 43 487 487 714 94.0 0 MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGLTTFLTMVYIVFVNPQILGVAGMDT SAVFVTTCLIAAFGSILMGLFANLPVALAPAMGLNAFFAFVVVGAMGLSWQIGMGAIFWG AVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANKDTLVSIGNL TSHSVLLGILGFFIIAILASRNIHAAVLISIIVTTLLGWMLGDVHYNGIVSAPPSVMSVI GHVDLAGSFNIGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADAKGKFPRMKQALYVDSV SSVTGAFIGTSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLVIFLSPLAGMVPGYAAAG ALIYVGVLMTSSLSRVKWDDLTEAVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGR LRDLSPCVIVVALLFVLKIVFIDAH >gi|283548475|gb|GG730302.1| GENE 439 454158 - 454823 668 221 aa, chain + ## HITS:1 COG:STM3852 KEGG:ns NR:ns ## COG: STM3852 COG0637 # Protein_GI_number: 16767136 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Salmonella typhimurium LT2 # 1 221 1 221 221 417 86.0 1e-117 MSQIEAVFFDCDGTLVDSEVICSRAYVSMFQAFGITLDLEEIFKRFKGVKLYEIIDIINE EHGVELAKADLEPVYRAEVARLFDTELEVIAGANALLDSMAVPMCVVSNGPVSKMQHSLG KLGMLHHFPDLLFSGYDIQRWKPDPDLMFHAAKAMNVNVENCILVDDSSAGAQAGIAAGM DVFYFCADPHNKPIDHPKVTTFTDLTQLPELWKARGWDITR >gi|283548475|gb|GG730302.1| GENE 440 454907 - 455632 861 241 aa, chain - ## HITS:1 COG:STM3853 KEGG:ns NR:ns ## COG: STM3853 COG0704 # Protein_GI_number: 16767137 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Salmonella typhimurium LT2 # 1 241 1 241 241 445 97.0 1e-125 MDNLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMHNQDSDLAKRVIEGDKN VNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIAELERIGDVADKICRTALEKFSQQ HQPLLVSLESLGRHTVQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIVRQLMTYMM EDPRTIPSVLTALFCARSIERIGDRCQNICEYIFYFVKGQDFRHVGGDELDKLLAGKDPK E >gi|283548475|gb|GG730302.1| GENE 441 455647 - 456420 336 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 11 252 2 239 245 134 36 8e-30 MSMVDTAPGKIQVRDLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMF ELYPEQRAEGEILLDGDNILTNTQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEK LSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP CSALDPISTGRIEELITELKEDYTVVIVTHNMQQAARCSDHTAFMYLGELIEFSNTDDLF TKPAKKQTEDYITGRYG >gi|283548475|gb|GG730302.1| GENE 442 456528 - 457418 1067 296 aa, chain - ## HITS:1 COG:ECs4662 KEGG:ns NR:ns ## COG: ECs4662 COG0581 # Protein_GI_number: 15833916 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Escherichia coli O157:H7 # 1 296 1 296 296 494 96.0 1e-139 MATLEMQNTAALAQSRRKMQARRRLKNRIALTLSMATMAFGLFWLIWILMSTITRGIDGM SLALFTEMTPPPNTAGGGLANALAGSGLLILWATVFGTPLGIMAGIYLAEYGRKSWLAEV IRFINDILLSAPSIVVGLFVYTIVVAKMEHFSGWAGVIALALLQVPIVIRTTENMLKLVP DSLREAAYALGTPKWKMISAITLKASVSGIITGVLLAIARIAGETAPLLFTSLSNQFWST DMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIITLCVLLLNILARVIFAKKKHG >gi|283548475|gb|GG730302.1| GENE 443 457418 - 458377 1305 319 aa, chain - ## HITS:1 COG:STM3856 KEGG:ns NR:ns ## COG: STM3856 COG0573 # Protein_GI_number: 16767140 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Salmonella typhimurium LT2 # 1 319 1 319 319 534 97.0 1e-152 MAATKPAFNPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLVISSWPSIQKFGFSFLWTK EWDAPNDIYGALVPIYGTLVTSLIALLIAVPVSFGIALFLTELAPGWLRRPLGIAIELLA AIPSIVYGMWGLFIFAPLFATWFQEPVGNILSNIPFVGALFAGPAFGIGILAAGVILAIM IIPYIAAVMRDVFEQTPVLMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFVITFI VLAASKFMIMRLAKNEGAR >gi|283548475|gb|GG730302.1| GENE 444 458522 - 459562 1211 346 aa, chain - ## HITS:1 COG:pstS KEGG:ns NR:ns ## COG: pstS COG0226 # Protein_GI_number: 16131596 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 346 1 346 346 594 93.0 1e-169 MKVMRTTVATVVAATLSMSAFSAFAAASLTGAGATFPAPVYAKWADTYQKETGSKVNYQG IGSSGGVKQITANTVDFGASDAPLSDEKLNQEGLFQFPTVIGGVVLAVNIPGLKSGELVL DGKTLGDIYLGKIKKWDDEAITKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNEE WKSKIGSGSTVNWPTGLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQNNLAYTRLISADGK PVSPTEDNFANAAKGADWSKTFAQDLTNQKGDDAWPITSTTFILVHKEQKKPEQGAEVLK FFDWAYKNGGKQANDLDYASLPDSVVEQIRAAWKTNVKDSSGKALY >gi|283548475|gb|GG730302.1| GENE 445 459897 - 461726 2563 609 aa, chain - ## HITS:1 COG:glmS KEGG:ns NR:ns ## COG: glmS COG0449 # Protein_GI_number: 16131597 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Escherichia coli K12 # 1 609 1 609 609 1141 95.0 0 MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGNMTRLRRLGKVQMLTAAAE EHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIVVVHNGIIENHEPLRELLKTRGYTFV SETDTEVIAHLVHWELEQGGTLREAVLRAIPQLRGAYGTVIMDTRSPETLLAARSGSPLV IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEVTRRSVSIFDKSGAEVKRQDIESNLQ YDAGEKGIYRHYMQKEIYEQPNAIKNTLTGRISHGEVDLSELGSRANELLSQVEHIQIIA CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL RLSKELGYLGSLAICNVPGSSLVRESDLAMMTNAGTEIGVASTKAFTTQLTVLLMLVAKL SRLKGLDASIEQEIVHGLQALPSRIEQMLSQDKRIAALAEGFSDKHHALFLGRGDQYPIA LEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRAR GGQLYVFADQDAGFTSSENMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPR NLAKSVTVE >gi|283548475|gb|GG730302.1| GENE 446 461951 - 463321 1560 456 aa, chain - ## HITS:1 COG:STM3862 KEGG:ns NR:ns ## COG: STM3862 COG1207 # Protein_GI_number: 16767146 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Salmonella typhimurium LT2 # 1 456 1 456 456 836 92.0 0 MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANELGATHVHLVYGHGGD LLKQTLKDGNLNWVLQAEQLGTGHAMQQAAPFFSDDEDILMLYGDVPLISTDTLRRLREA KPQGGIGLLTVKLDDPSGYGRITRENGNVTGIVEHKDATDEQRQIQEINTGILIANGADL KRWLSKLTNNNVQGEYYITDIIAMAYQEGREIAAVHPARISETEGVNNRLQLSRLERVYQ SEQAEKLLLAGVMLRDPARFDLRGTLIHGRDVEIDTNVIIEGNVTVGDRVKIGAGCIIKN SVIGDGCELSPYSVVEDAHLEAACTIGPFARLRPGAELQEGAHVGNFVEMKKARLGKGSK AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGNGAT IAAGTTVTRDVADNELVLSRVPQVHKQGWQRPVKKK >gi|283548475|gb|GG730302.1| GENE 447 463980 - 464393 453 137 aa, chain - ## HITS:1 COG:STM3864 KEGG:ns NR:ns ## COG: STM3864 COG0355 # Protein_GI_number: 16767148 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Salmonella typhimurium LT2 # 1 137 3 139 139 239 98.0 1e-63 MTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIFPGHAPLLTAIKPGMIRIVKQFGHEEF IYLSGGILEVQPGSVTVLADTAIRGQDLDEARALEAKRKAEEHIKSSHGDVDYAQASAEL AKAIAKLRVIELTKKAM >gi|283548475|gb|GG730302.1| GENE 448 464420 - 465802 1579 460 aa, chain - ## HITS:1 COG:ECs4674 KEGG:ns NR:ns ## COG: ECs4674 COG0055 # Protein_GI_number: 15833928 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Escherichia coli O157:H7 # 1 460 1 460 460 874 97.0 0 MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVMNGKESLVLEVQQQLGGGIVRTIAMGSS DGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGHPIDMKGDIGEEERWAIHRAAPTYEEL SSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV GERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL FVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVP ADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG VQSLLQRYQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGKYVS LKDTIRGFKGIMEGEYDHLPEQAFYMVGSIEEAVEKAKKL >gi|283548475|gb|GG730302.1| GENE 449 465829 - 466692 1059 287 aa, chain - ## HITS:1 COG:STM3866 KEGG:ns NR:ns ## COG: STM3866 COG0224 # Protein_GI_number: 16767150 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Salmonella typhimurium LT2 # 1 287 1 287 287 536 96.0 1e-152 MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLANGN LEYKHPYLEERDVKRVGYLVVSTDRGLCGGLNINLFKKLLADMKTWSDKGVQCDIAMIGS KGVSFFNSVGGNVIAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYVVSNKFINTMS QTPTITQLLPLPASDDDELKRKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQ AARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV >gi|283548475|gb|GG730302.1| GENE 450 466743 - 468284 1415 513 aa, chain - ## HITS:1 COG:ECs4676 KEGG:ns NR:ns ## COG: ECs4676 COG0056 # Protein_GI_number: 15833930 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Escherichia coli O157:H7 # 1 513 1 513 513 953 94.0 0 MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGSPIDGKGP VDNDGFSPIEVIAPGVIERQSVDQPVQIGYKSVDAMIPIGRGQRELIIGDRQTGKTAMAI DAIINQRDSGIKCVYVAIGQKASTISNVVRKLEEHGALSNTIVVVATASESAALQYLAPY AGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQVSLLLRRPPGREAFPGDVFYLHSRLLER ASRVNAEYVENFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF NSGIRPAVNPGISVSRVGGAAQTKIIKKLSGGIRTALAQYRELAAFSQFASDLDEATRKQ LSHGQKVTELLKQKQYAPMSVAQQGVVLFAAERGYLEDVELAKIGSFEAALLAYVDRDHA PLMQEINQSGGYNDEIEGKLKAILDSFKATQSW >gi|283548475|gb|GG730302.1| GENE 451 468297 - 468830 531 177 aa, chain - ## HITS:1 COG:STM3868 KEGG:ns NR:ns ## COG: STM3868 COG0712 # Protein_GI_number: 16767152 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Salmonella typhimurium LT2 # 1 177 1 177 177 292 95.0 2e-79 MSEFITVARPYAKAAFDFAVEHQSVDRWQDMLTFAAEVTKNEQMAELLSGALAPETLAES FIAVCGEQLDESGQNLIRVMAENNRLNALPDVLEQFIHLRAASEAISEVEVTSANALSDE QLTKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVIDGSVRGRLERLADVLQS >gi|283548475|gb|GG730302.1| GENE 452 468845 - 469315 535 156 aa, chain - ## HITS:1 COG:STM3869 KEGG:ns NR:ns ## COG: STM3869 COG0711 # Protein_GI_number: 16767153 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Salmonella typhimurium LT2 # 1 156 1 156 156 202 98.0 2e-52 MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKAS ATDQLKKAKAEAQVIIEQANKRRAQILDEAKTEAEQERTKIVAQAQAEIEAERKRAREEL RKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL >gi|283548475|gb|GG730302.1| GENE 453 469375 - 469614 370 79 aa, chain - ## HITS:1 COG:BU003 KEGG:ns NR:ns ## COG: BU003 COG0636 # Protein_GI_number: 15616633 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Buchnera sp. APS # 1 79 1 79 79 98 84.0 2e-21 MENLNMDLLYIAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLV DAIPMIAVGLGLYVMFAVA >gi|283548475|gb|GG730302.1| GENE 454 469661 - 470476 759 271 aa, chain - ## HITS:1 COG:STM3871 KEGG:ns NR:ns ## COG: STM3871 COG0356 # Protein_GI_number: 16767155 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Salmonella typhimurium LT2 # 1 271 1 271 271 464 95.0 1e-131 MASENMTPQDYIGHHLNNLQLDLRTFSLVDPHNPPATFWTLNIDSIFFSVVLGLLFLLMF RSVAKKATSGVPGKFQTAIELVIGFVHGSVKDMYHGKSKLIAPLALTIFVWVFLMNFMDL LPIDLLPYIGEHIFGLPALRVVPSADVNITLSMALGVFILILFYSIKMKGIGGFAKELTL QPFNHWAFIPINLILEGVSLLSKPISLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVP WAIFHILIITLQAFIFMVLTIVYLSMASEEH >gi|283548475|gb|GG730302.1| GENE 455 470484 - 470864 241 126 aa, chain - ## HITS:1 COG:STM3872 KEGG:ns NR:ns ## COG: STM3872 COG3312 # Protein_GI_number: 16767156 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit I # Organism: Salmonella typhimurium LT2 # 1 126 1 126 126 160 92.0 6e-40 MSMSLLSRNVARKLLLTQLLAVIASGLLFSLKDPFWGISAVCGGLAVLLPNVLFMIFAWR HQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFMPLIVTWVLVLVVQILAPA VINNKG >gi|283548475|gb|GG730302.1| GENE 456 471479 - 472102 572 207 aa, chain - ## HITS:1 COG:STM3873 KEGG:ns NR:ns ## COG: STM3873 COG0357 # Protein_GI_number: 16767157 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Salmonella typhimurium LT2 # 1 207 1 207 207 382 90.0 1e-106 MLNKLSRLLADAGISLTDHQKTQLIAYVDMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV APYLKGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELGLTNITPV QSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGQNGRFYALKGQLPADEIASLPAEF SVESVEKLRVPQLDGERHLVVIKPNKI >gi|283548475|gb|GG730302.1| GENE 457 472209 - 474098 1811 629 aa, chain - ## HITS:1 COG:STM3874 KEGG:ns NR:ns ## COG: STM3874 COG0445 # Protein_GI_number: 16767158 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Salmonella typhimurium LT2 # 1 629 1 629 629 1191 94.0 0 MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLV KEVDALGGLMAKAIDHAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMI FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPS IPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLSQQNSDNPMPVFSFLGDVAQHPRQM PCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPE GLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESK FIQGLFFAGQINGTTGYEEAAAQGMLAGLNAARLSAEKDGWAPRRDQAYLGVLVDDLCTL GTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLERIEQERQRL KSTWVNPLAESAAEVNAHLATPLSREASGEDLLRRPDMTYAQLTSLSAFAPALDDAQAAE QVEIQVKYEGYIARQQEEIERQQRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPVSIGQ ASRISGVTPAAISILLVWLKKQGMLRRSA >gi|283548475|gb|GG730302.1| GENE 458 474471 - 474920 398 149 aa, chain - ## HITS:1 COG:mioC KEGG:ns NR:ns ## COG: mioC COG0716 # Protein_GI_number: 16131610 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli K12 # 1 147 1 147 147 239 80.0 1e-63 MAEITLISGSTLGSAEYVAEHLAEKLEDAGFSSEILHGPMLDEVPAEGIWLIISSTHGAG DIPDNLQPLYDALREQKPDLSQVRFGAIGIGSREYDTFCGAIDKLEAELKACGAKQIGET LRINVLEHEIPEDPAEIWLGSWHPLLRDL >gi|283548475|gb|GG730302.1| GENE 459 475009 - 475467 553 152 aa, chain - ## HITS:1 COG:STM3876 KEGG:ns NR:ns ## COG: STM3876 COG1522 # Protein_GI_number: 16767160 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 152 1 152 152 290 98.0 7e-79 MENYQIDNLDRGILDALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVS PKQLGYDVGCFIGIILKSAKDYPSALARLESLDEVTEAYYTTGHYSIFIKVMCKSIDALQ QVLINKIQTIDEIQSTETLIVLQNPIMRTIKP >gi|283548475|gb|GG730302.1| GENE 460 475619 - 476611 1197 330 aa, chain + ## HITS:1 COG:asnA KEGG:ns NR:ns ## COG: asnA COG2502 # Protein_GI_number: 16131612 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Escherichia coli K12 # 1 330 1 330 330 637 96.0 0 MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVK ALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWE RVMGDGERQFSTLKSTVEAIWAGIKATEAAVSKEFGLAPFLPEQIHFVHSQALLSRYPDL DAKGRERAIAKELGAVFLVGIGGKLSDGHRHDVRAPDYDDWSSASELGHAGLNGDILVWN PVLEDAFELSSMGIRVDADTLKHQLSLTGDEDRLSLEWHQALLRGEMPQTIGGGIGQSRL TMLLLQLPHIGQVQCGVWPAQVRESVSSLL >gi|283548475|gb|GG730302.1| GENE 461 476615 - 478066 1190 483 aa, chain - ## HITS:1 COG:STM3878 KEGG:ns NR:ns ## COG: STM3878 COG2425 # Protein_GI_number: 16767162 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Salmonella typhimurium LT2 # 10 473 1 464 474 822 90.0 0 MLTLDTLNIMLAVSEEAMIEEMIVALLASPKMVVFFKKFPRLKKAITDDIPRWRESLRSR LKDTHVPPELMEEVMCYQQSQLLSHAQFIVQLPQILALLHRLHSPWAGQAQQLVDDNSAF TPALHTLFLQRWRLSLVVQTTTLNQQLLEDEREHLLSEVQERMTLSGQLEPVLAENDNAA GRLWDMSAGQIKRGDYQLLVKYGEFLTQQPELQRLAEQLGRSREAKSVPRKDAPMETFRT LVREPATVPEQVDGIQQSDDILRLLPPELATLGITELEYEFYRRLVEKQLLTYRLHGEAW REKVTERPVVHQDFDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRVALADNRRCFI MLFSTEVVRYELSGPEGIEQAIRFLSQRFRGGTDIASCFRAIIERMQGREWFDADAVVIS DFIAQRLPDEVVNKVGELQRVHQHRFHAVAMSAHGKPGIMRIFDHIWRFDTGMRSRLLRR WRR >gi|283548475|gb|GG730302.1| GENE 462 478060 - 479556 1528 498 aa, chain - ## HITS:1 COG:STM3879 KEGG:ns NR:ns ## COG: STM3879 COG0714 # Protein_GI_number: 16767163 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Salmonella typhimurium LT2 # 1 498 1 498 498 880 91.0 0 MAHPHLLAERISRLSNALEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK FAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTAGYLPEAEIVFLDEIWKAG PAILNTLLTAINERHFRNGAHEEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV QDKANFRSMLLSQQDESDNPVPASLQVTDEEYYQWQKEIGAIKLPDRVFELIFTLRQQLD TLPNAPYVSDRRWKKAIRLLQASAFFSGRDAVVPIDLILLKDCLWYDAQSLNLMQQQLEI LMTGHAWQQQAMLTRLGSIVQRRIQLQQQQSDKTAFTVVRQGGMFSRRPHYDLPPEATAS VVTLLLQKPLKLHDMEVIHIAFERGALEQWLTKGGEIRGKLNGIGFAQTLNMEVDSAQHL VVRDVSLQGSRLALPGSSQESMPAEIKLELEALDNEWHQQHSAFSEQQKCLFIHSDWLGR IEASLQDVGSQIRQAQQC >gi|283548475|gb|GG730302.1| GENE 463 479887 - 481755 2022 622 aa, chain + ## HITS:1 COG:ECs4689 KEGG:ns NR:ns ## COG: ECs4689 COG3158 # Protein_GI_number: 15833943 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transporter # Organism: Escherichia coli O157:H7 # 1 622 1 622 622 1130 94.0 0 MSTDNKQSLSAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLL IFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSMLVIMGLIGGSFFYGEVVIT PAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFLIQKHGTGMVGKLFAPIMLLWFLTL AVLGVRSIIGNPEVLHALNPYWAVHFFLEFKTLSFIALGAVVLSITGVEALYADMGHFGK LPIRLAWFSVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPDWALIPLLILAALATVIA SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWMLYFAVVIVIVSFEHS SNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVFLILVAFLCVDVPLFSANLDKLI SGGWLPLTLGLVMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYM SRALNVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSPTFWRVVASY GWRETPNVEEVFHRCGLEGLSCRMMETSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNAL RAPDQFEIPPNRVIELGTQVEI >gi|283548475|gb|GG730302.1| GENE 464 481948 - 482367 374 139 aa, chain + ## HITS:1 COG:STM3881 KEGG:ns NR:ns ## COG: STM3881 COG1869 # Protein_GI_number: 16767165 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Salmonella typhimurium LT2 # 1 139 1 139 139 241 93.0 4e-64 MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTTRIDMALTQGVPSFMQVLDVVTR EMQVEAAILATEIKQHNPQLHETLLGHIEQLQQHQGNTIEIRYTTHEQFKKQTADSQAVI RSGECSPYANIILCAGVTF >gi|283548475|gb|GG730302.1| GENE 465 482375 - 483880 1744 501 aa, chain + ## HITS:1 COG:STM3882 KEGG:ns NR:ns ## COG: STM3882 COG1129 # Protein_GI_number: 16767166 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, ATPase component # Organism: Salmonella typhimurium LT2 # 1 501 1 501 501 946 97.0 0 MNALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS LLWLGKETTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKKMYA EADLLLAKLNLRFKSDRLVGELSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL FRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGR KLEDQYPRLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG ALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS RAGGSLKHKDEQQAVGDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILD EPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLGGEFTRE QATQEVLMAAAVGKLNRVNQE >gi|283548475|gb|GG730302.1| GENE 466 483886 - 484851 1342 321 aa, chain + ## HITS:1 COG:ECs4692 KEGG:ns NR:ns ## COG: ECs4692 COG1172 # Protein_GI_number: 15833946 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components # Organism: Escherichia coli O157:H7 # 1 321 1 321 321 472 97.0 1e-133 MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMA VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA KGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDNADLFGWFGIGRPLGVPTPVWIMG IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSKIKIIVYSLCGLLASLAGIIEVA RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY YQMIVKAVVILLAVLVDNKKQ >gi|283548475|gb|GG730302.1| GENE 467 484876 - 485766 1189 296 aa, chain + ## HITS:1 COG:ECs4693 KEGG:ns NR:ns ## COG: ECs4693 COG1879 # Protein_GI_number: 15833947 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 296 1 296 296 490 98.0 1e-138 MNMKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV ILDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAKIPVITLDRQATKG DVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN VLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVIKQ >gi|283548475|gb|GG730302.1| GENE 468 485908 - 486837 879 309 aa, chain + ## HITS:1 COG:STM3885 KEGG:ns NR:ns ## COG: STM3885 COG0524 # Protein_GI_number: 16767169 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Salmonella typhimurium LT2 # 1 308 1 308 309 478 89.0 1e-135 MKTAGNLVVLGSINADHILNLKSFPTPGETVTGSHYQVAFGGKGANQAVAAGRSGAKIAF IACTGDDDIGESVRKQLAKDNIDIAPISVISGESTGVALIFVNGEGENVIGIHAGANAAL SPALVEAQRDRIAQASALLMQLESPIESVLAAAKIAQQNKTTVALNPAPARELSDELLAL VDIITPNETEAEKLTGIRVENDEDAAKAAQALHAKGIHTVLITLGSRGVWASVNGEGHRV PGFKVDAVDTIAAGDTFNGALITALLEEIPLPEAIRFAHAAAAIAVTRKGAQPSVPWREE IEAFLSQQR >gi|283548475|gb|GG730302.1| GENE 469 486850 - 487833 859 327 aa, chain + ## HITS:1 COG:STM3886 KEGG:ns NR:ns ## COG: STM3886 COG1609 # Protein_GI_number: 16767170 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 327 4 332 332 622 94.0 1e-178 MKDVARLAGVSTSTVSHVINKDRFVSEFVTDKVEAAIKELNYAPSALARSLKLNQTRTIG MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC TETHQPSREIMQRYPSIPTVMMDWSPFDGESDLIQDNSLLGGDLATQHLIEKGFTRIACI TGPLDKTPARLRLEGYRAAMKRAGLPVPEGYEITGDFEFGGGFEAMQTLLSHKQRPQAVF TGNDAMAVGAYQALYQAGLRIPQDMAVVGYDDIELARYMTPPLTTIHQPKDELGELAIDV LIHRMAQPALQQQRLQLTPVLMARGSV >gi|283548475|gb|GG730302.1| GENE 470 487799 - 489226 1128 475 aa, chain - ## HITS:1 COG:STM3887 KEGG:ns NR:ns ## COG: STM3887 COG0477 # Protein_GI_number: 16767171 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 475 1 475 475 777 91.0 0 MSEKKSRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVA MLIPVSGWLADRFGTRRVFMIAVSLFTLGSLACALSSSLSELVVFRVIQGIGGAMMMPVA RLALLRAYPRSELLPVLNFVTMPGLVGPILGPVLGGVLVTWASWHWIFLINIPIGIAGIF YARKYMPNFTTPRRGFDMTGFFLFGLSLVLFSSGVELFGEKLVATWVALSIILISIVMLL AYIRHARRHPTPLISLPIFKTRTFSVGIAGNLATRLGTGCVPFLMPLMLQVGFGYPALIA GCMMAPTALGSILAKSMVTQVLRRLGYRTTLVGVTVFIGLMIAQFALQSPAMPVWMLILP LFILGMAMSTQFTSMNTITLADLTDENASSGNSVLAVTQQLSISLGVAISAAVLRIYEGM EGTNTVEQFHYTFITMGAITIISAVMFMLLKAKDGRNLIKDRHKSKPTPAPSEQE >gi|283548475|gb|GG730302.1| GENE 471 489228 - 489932 696 234 aa, chain - ## HITS:1 COG:STM3888 KEGG:ns NR:ns ## COG: STM3888 COG2186 # Protein_GI_number: 16767172 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 233 1 233 234 419 87.0 1e-117 MPLNAQQLAAQKNLSYVLAEKLAQRILKGEYAPGAILPGEIELGDQFGVSRTAVREAVKT LTAKGMVLPRPRIGTRVMPQANWNFLDQELLTWWMTEDNFPQVIKHFLVMRISLEPQACL LAATIGTAEQKAHLNTLMEEMVELKRNFRRERWIEVDIAWHEHIYEMSANPFLISFASLF HSVYQTYFTSITYNDVVKLDLHQAIVDAIDASDGDRAFTACQALLIAPNVLPDE Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:43:34 2011 Seq name: gi|283548474|gb|GG730303.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld4, whole genome shotgun sequence Length of sequence - 423041 bp Number of predicted genes - 403, with homology - 396 Number of transcription units - 220, operones - 91 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 22 - 510 97.0 # CP000822 [D:185648..188554] # 23S ribosomal RNA # Citrobacter koseri ATCC BAA-895 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter. + 5S_RRNA 731 - 859 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. + TRNA 873 - 948 88.7 # Thr GGT 0 0 + 5S_RRNA 979 - 1100 98.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. - Term 1100 - 1145 6.1 1 1 Op 1 34/0.000 - CDS 1207 - 1965 539 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 6/0.091 - CDS 1973 - 3076 687 ## COG0765 ABC-type amino acid transport system, permease component 3 1 Op 3 6/0.091 - CDS 3086 - 4267 759 ## COG4597 ABC-type amino acid transport system, permease component 4 1 Op 4 . - CDS 4337 - 5362 1089 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain - Prom 5406 - 5465 3.1 - Term 5776 - 5805 2.1 5 2 Tu 1 . - CDS 5818 - 6039 197 ## ECO103_4006 putative outer membrane protein - Prom 6143 - 6202 5.3 - Term 6269 - 6297 1.0 6 3 Op 1 27/0.000 - CDS 6311 - 9424 3246 ## COG0841 Cation/multidrug efflux pump 7 3 Op 2 . - CDS 9436 - 10596 873 ## COG0845 Membrane-fusion protein - Prom 10809 - 10868 6.8 + Prom 10797 - 10856 5.0 8 4 Tu 1 . + CDS 11007 - 11669 261 ## COG1309 Transcriptional regulator 9 5 Op 1 . - CDS 11710 - 11874 142 ## CKO_04675 hypothetical protein 10 5 Op 2 1/0.675 - CDS 11957 - 12841 856 ## COG0863 DNA modification methylase - Prom 12861 - 12920 2.5 - Term 12863 - 12900 1.4 11 6 Op 1 12/0.013 - CDS 12930 - 13226 323 ## COG2901 Factor for inversion stimulation Fis, transcriptional activator 12 6 Op 2 . - CDS 13252 - 14217 1114 ## PROTEIN SUPPORTED gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase - Prom 14350 - 14409 5.5 - Term 14446 - 14488 2.5 13 7 Tu 1 . - CDS 14516 - 15292 334 ## COG3338 Carbonic anhydrase - Prom 15313 - 15372 4.8 - Term 15379 - 15412 4.5 14 8 Op 1 3/0.519 - CDS 15421 - 16302 1541 ## PROTEIN SUPPORTED gi|228579759|ref|YP_002848103.1| ribosomal protein L11 methyltransferase 15 8 Op 2 4/0.351 - CDS 16314 - 17765 1553 ## COG4145 Na+/panthothenate symporter 16 8 Op 3 6/0.091 - CDS 17755 - 17997 308 ## COG3924 Predicted membrane protein - Prom 18022 - 18081 4.8 - Term 18053 - 18092 7.8 17 9 Op 1 27/0.000 - CDS 18105 - 19451 1431 ## COG0439 Biotin carboxylase 18 9 Op 2 1/0.675 - CDS 19465 - 19935 488 ## COG0511 Biotin carboxyl carrier protein - Term 20267 - 20303 0.6 19 10 Op 1 13/0.013 - CDS 20327 - 20926 370 ## COG2717 Predicted membrane protein 20 10 Op 2 2/0.571 - CDS 20927 - 21931 748 ## COG2041 Sulfite oxidase and related enzymes - Prom 21989 - 22048 1.9 21 11 Tu 1 . - CDS 22050 - 23024 1029 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 23085 - 23144 2.0 + Prom 23159 - 23218 5.5 22 12 Tu 1 . + CDS 23250 - 25190 1353 ## COG2200 FOG: EAL domain + Term 25228 - 25262 -0.9 + Prom 25398 - 25457 5.1 23 13 Op 1 22/0.000 + CDS 25497 - 26540 1189 ## COG1077 Actin-like ATPase involved in cell morphogenesis 24 13 Op 2 19/0.000 + CDS 26605 - 27603 957 ## COG1792 Cell shape-determining protein 25 13 Op 3 7/0.078 + CDS 27604 - 28092 364 ## COG2891 Cell shape-determining protein 26 14 Op 1 8/0.065 + CDS 28199 - 28792 512 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 27 14 Op 2 5/0.182 + CDS 28782 - 30251 1519 ## COG1530 Ribonucleases G and E + Prom 30262 - 30321 1.9 28 15 Tu 1 . + CDS 30361 - 34161 3427 ## COG3164 Predicted membrane protein 29 16 Tu 1 . + CDS 34325 - 35770 1727 ## COG0312 Predicted Zn-dependent proteases and their inactivated homologs 30 17 Tu 1 . - CDS 35869 - 36801 1055 ## COG0583 Transcriptional regulator - Prom 36842 - 36901 7.2 + Prom 36818 - 36877 6.0 31 18 Op 1 . + CDS 36986 - 37189 229 ## G2583_3962 hypothetical protein 32 18 Op 2 6/0.091 + CDS 37233 - 38129 1021 ## COG1566 Multidrug resistance efflux pump 33 18 Op 3 4/0.351 + CDS 38135 - 40102 1827 ## COG1289 Predicted membrane protein + Term 40109 - 40147 5.3 + Prom 40126 - 40185 4.0 34 19 Tu 1 . + CDS 40220 - 40498 253 ## COG2732 Barstar, RNAse (barnase) inhibitor + Term 40532 - 40564 -0.1 - Term 40498 - 40528 3.3 35 20 Tu 1 . - CDS 40555 - 40821 315 ## SG3252 hypothetical protein - Prom 40878 - 40937 5.3 - Term 41135 - 41169 3.4 36 21 Tu 1 . - CDS 41196 - 41666 621 ## COG1438 Arginine repressor - Prom 41822 - 41881 6.2 + Prom 41908 - 41967 4.4 37 22 Tu 1 . + CDS 42103 - 43038 1219 ## COG0039 Malate/lactate dehydrogenases + Term 43113 - 43150 3.1 - Term 43099 - 43136 3.1 38 23 Op 1 6/0.091 - CDS 43167 - 44234 1013 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 44261 - 44320 2.9 39 23 Op 2 5/0.182 - CDS 44327 - 45694 1329 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 45739 - 45798 2.7 40 24 Tu 1 . - CDS 45863 - 46261 591 ## COG3105 Uncharacterized protein conserved in bacteria - Prom 46326 - 46385 3.8 41 25 Tu 1 . + CDS 46454 - 47581 1035 ## COG1485 Predicted ATPase + Prom 47583 - 47642 4.1 42 26 Op 1 . + CDS 47720 - 47758 51 ## PROTEIN SUPPORTED gi|145320176|gb|ABP62323.1| LSU ribosomal protein L13P 43 26 Op 2 . + CDS 47745 - 47789 50 ## PROTEIN SUPPORTED gi|145320176|gb|ABP62323.1| LSU ribosomal protein L13P 44 26 Op 3 59/0.000 + CDS 47782 - 48225 754 ## PROTEIN SUPPORTED gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13 45 26 Op 4 6/0.091 + CDS 48241 - 48633 652 ## PROTEIN SUPPORTED gi|16762104|ref|NP_457721.1| 30S ribosomal protein S9 + Term 48661 - 48709 7.5 + Prom 48744 - 48803 4.5 46 27 Op 1 13/0.013 + CDS 48950 - 49588 656 ## PROTEIN SUPPORTED gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase 47 27 Op 2 . + CDS 49594 - 50097 474 ## COG2969 Stringent starvation protein B + Term 50102 - 50139 6.1 - Term 50090 - 50127 6.1 48 28 Tu 1 . - CDS 50144 - 51511 1582 ## COG3069 C4-dicarboxylate transporter - Prom 51716 - 51775 6.3 + Prom 51613 - 51672 9.0 49 29 Tu 1 . + CDS 51879 - 52661 896 ## COG2186 Transcriptional regulators + Prom 52819 - 52878 4.6 50 30 Tu 1 . + CDS 52922 - 53815 1016 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase + Term 53825 - 53864 0.1 51 31 Op 1 1/0.675 + CDS 53925 - 55415 1804 ## COG0477 Permeases of the major facilitator superfamily 52 31 Op 2 5/0.182 + CDS 55463 - 55708 270 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase 53 31 Op 3 3/0.519 + CDS 55705 - 56574 303 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 54 31 Op 4 . + CDS 56577 - 57044 425 ## COG2731 Beta-galactosidase, beta subunit - Term 57043 - 57093 9.5 55 32 Op 1 6/0.091 - CDS 57105 - 58385 1338 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 56 32 Op 2 . - CDS 58372 - 59625 1182 ## COG1457 Purine-cytosine permease and related proteins - Prom 59657 - 59716 4.5 57 33 Tu 1 6/0.091 + CDS 60411 - 60971 605 ## COG3539 P pilus assembly protein, pilin FimA + Term 60974 - 61023 4.4 + Prom 60997 - 61056 4.0 58 34 Op 1 10/0.065 + CDS 61089 - 63752 2921 ## COG3188 P pilus assembly protein, porin PapC 59 34 Op 2 7/0.078 + CDS 63776 - 64519 743 ## COG3121 P pilus assembly protein, chaperone PapD 60 35 Op 1 4/0.351 + CDS 64624 - 65040 481 ## COG3539 P pilus assembly protein, pilin FimA 61 35 Op 2 4/0.351 + CDS 65037 - 65273 234 ## COG3539 P pilus assembly protein, pilin FimA 62 35 Op 3 4/0.351 + CDS 65270 - 65509 144 ## COG3539 P pilus assembly protein, pilin FimA 63 35 Op 4 . + CDS 65524 - 66033 487 ## COG3539 P pilus assembly protein, pilin FimA + Term 66050 - 66092 -0.7 64 36 Tu 1 . + CDS 66138 - 66902 564 ## SEN0206 hypothetical protein 65 37 Op 1 . - CDS 67342 - 67632 81 ## gi|291086504|ref|ZP_06571547.1| conserved hypothetical protein 66 37 Op 2 21/0.000 - CDS 67644 - 69062 1885 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 67 37 Op 3 . - CDS 69075 - 73535 5106 ## COG0069 Glutamate synthase domain 2 - Prom 73669 - 73728 3.0 + Prom 74054 - 74113 5.6 68 38 Tu 1 . + CDS 74243 - 75148 982 ## COG1242 Predicted Fe-S oxidoreductase + Prom 75150 - 75209 4.2 69 39 Tu 1 . + CDS 75315 - 77651 2843 ## COG0642 Signal transduction histidine kinase + Term 77703 - 77758 -1.0 + Prom 77777 - 77836 5.3 70 40 Op 1 3/0.519 + CDS 77881 - 78534 742 ## COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis + Term 78546 - 78575 -0.5 + Prom 78548 - 78607 1.8 71 40 Op 2 . + CDS 78630 - 79250 564 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 72 41 Op 1 7/0.078 - CDS 79317 - 79589 270 ## COG1925 Phosphotransferase system, HPr-related proteins 73 41 Op 2 8/0.065 - CDS 79586 - 80440 1060 ## COG1660 Predicted P-loop-containing kinase 74 41 Op 3 11/0.013 - CDS 80486 - 80977 505 ## COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - Term 80994 - 81031 8.2 75 42 Op 1 11/0.013 - CDS 81061 - 81348 483 ## PROTEIN SUPPORTED gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930 76 42 Op 2 17/0.000 - CDS 81371 - 82897 1579 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 77 42 Op 3 19/0.000 - CDS 82851 - 83576 291 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 78 42 Op 4 12/0.013 - CDS 83583 - 84131 733 ## COG1934 Uncharacterized protein conserved in bacteria 79 42 Op 5 11/0.013 - CDS 84100 - 84675 448 ## COG3117 Uncharacterized protein conserved in bacteria 80 42 Op 6 13/0.013 - CDS 84672 - 85238 571 ## COG1778 Low specificity phosphatase (HAD superfamily) 81 42 Op 7 6/0.091 - CDS 85259 - 86245 897 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 82 42 Op 8 . - CDS 86259 - 87236 909 ## COG0530 Ca2+/Na+ antiporter - Prom 87300 - 87359 4.8 + Prom 87209 - 87268 3.4 83 43 Op 1 23/0.000 + CDS 87451 - 88263 301 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 84 43 Op 2 16/0.000 + CDS 88271 - 89053 924 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 85 43 Op 3 13/0.013 + CDS 89058 - 89615 680 ## COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component 86 43 Op 4 10/0.065 + CDS 89634 - 90269 868 ## COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component 87 43 Op 5 6/0.091 + CDS 90269 - 90562 338 ## COG3113 Predicted NTP binding protein (contains STAS domain) + Term 90631 - 90669 4.0 + Prom 90611 - 90670 1.6 88 44 Op 1 11/0.013 + CDS 90693 - 90986 291 ## COG5007 Predicted transcriptional regulator, BolA superfamily 89 44 Op 2 . + CDS 91040 - 92299 1615 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase + Term 92319 - 92353 3.1 - Term 92241 - 92273 -1.0 90 45 Tu 1 . - CDS 92356 - 92640 313 ## COG3423 Predicted transcriptional regulator - Prom 92738 - 92797 5.0 - Term 92805 - 92841 7.1 91 46 Tu 1 . - CDS 92862 - 94358 1127 ## COG0142 Geranylgeranyl pyrophosphate synthase + Prom 93967 - 94026 3.7 92 47 Op 1 . + CDS 94068 - 94403 561 ## PROTEIN SUPPORTED gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21 93 47 Op 2 . + CDS 94423 - 94680 437 ## PROTEIN SUPPORTED gi|227335105|ref|ZP_03838761.1| hypothetical protein CIT292_04912 + Term 94709 - 94742 6.1 + Prom 94688 - 94747 3.6 94 48 Op 1 6/0.091 + CDS 94808 - 95773 759 ## PROTEIN SUPPORTED gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily 95 48 Op 2 . + CDS 95789 - 96961 1559 ## COG0536 Predicted GTPase + Term 97006 - 97045 6.0 - Term 96994 - 97033 6.0 96 49 Tu 1 . - CDS 97092 - 98525 1137 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) - Prom 98628 - 98687 3.0 97 50 Tu 1 . + CDS 98774 - 99250 636 ## COG0782 Transcription elongation factor + Term 99297 - 99323 1.7 - Term 99279 - 99318 7.4 98 51 Tu 1 . - CDS 99404 - 99736 455 ## PROTEIN SUPPORTED gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein - Prom 99771 - 99830 2.8 + Prom 99397 - 99456 2.2 99 52 Op 1 . + CDS 99650 - 99826 59 ## 100 52 Op 2 13/0.013 + CDS 99823 - 100452 404 ## COG0293 23S rRNA methylase + Prom 100454 - 100513 4.2 101 52 Op 3 7/0.078 + CDS 100543 - 102486 1694 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 102517 - 102560 9.1 102 53 Op 1 9/0.065 + CDS 102585 - 103433 720 ## COG0294 Dihydropteroate synthase and related enzymes 103 53 Op 2 . + CDS 103426 - 104763 1630 ## COG1109 Phosphomannomutase + Term 104778 - 104818 8.8 104 54 Op 1 . - CDS 104809 - 106275 1396 ## COG3069 C4-dicarboxylate transporter 105 54 Op 2 . - CDS 106286 - 107419 995 ## ROD_20981 putative isoaspartyl dipeptidase - Prom 107494 - 107553 2.4 + Prom 107453 - 107512 3.0 106 55 Tu 1 . + CDS 107568 - 108461 692 ## COG0583 Transcriptional regulator + Term 108554 - 108589 -0.7 + Prom 108487 - 108546 3.2 107 56 Tu 1 . + CDS 108629 - 108961 322 ## COG1314 Preprotein translocase subunit SecG + Term 109067 - 109104 5.7 + TRNA 108971 - 109057 69.1 # Leu GAG 0 0 - Term 109208 - 109235 1.5 108 57 Tu 1 . - CDS 109252 - 110595 1676 ## COG0137 Argininosuccinate synthase - Prom 110634 - 110693 4.4 + TRNA 110930 - 111006 86.1 # Met CAT 0 0 109 58 Op 1 32/0.000 + CDS 111244 - 111666 401 ## COG0779 Uncharacterized protein conserved in bacteria 110 58 Op 2 20/0.000 + CDS 111688 - 113196 1039 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 111 58 Op 3 32/0.000 + CDS 113221 - 115911 3224 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) + Term 116081 - 116123 4.0 112 58 Op 4 26/0.000 + CDS 116132 - 116536 580 ## COG0858 Ribosome-binding factor A 113 58 Op 5 14/0.013 + CDS 116536 - 117480 959 ## COG0130 Pseudouridine synthase + Term 117698 - 117736 0.1 + Prom 117503 - 117562 3.6 114 59 Op 1 26/0.000 + CDS 117754 - 118023 445 ## PROTEIN SUPPORTED gi|16762048|ref|NP_457665.1| 30S ribosomal protein S15 + Term 118046 - 118074 1.3 115 59 Op 2 6/0.091 + CDS 118269 - 120401 184 ## PROTEIN SUPPORTED gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 116 60 Tu 1 . + CDS 120511 - 121395 535 ## COG4785 Lipoprotein NlpI, contains TPR repeats + Term 121431 - 121467 1.3 + Prom 121490 - 121549 5.7 117 61 Tu 1 . + CDS 121575 - 123500 2355 ## COG0513 Superfamily II DNA and RNA helicases + Term 123519 - 123583 7.2 + Prom 123543 - 123602 7.9 118 62 Tu 1 . + CDS 123646 - 124890 1707 ## COG0814 Amino acid permeases 119 63 Tu 1 . - CDS 124978 - 125985 1132 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 126023 - 126082 2.9 120 64 Op 1 13/0.013 - CDS 126173 - 127051 902 ## COG0826 Collagenase and related proteases 121 64 Op 2 . - CDS 127060 - 128055 990 ## COG0826 Collagenase and related proteases - Prom 128086 - 128145 4.2 + Prom 128192 - 128251 2.1 122 65 Op 1 6/0.091 + CDS 128276 - 128800 599 ## COG3154 Putative lipid carrier protein 123 65 Op 2 . + CDS 128794 - 129297 514 ## COG3153 Predicted acetyltransferase + Term 129344 - 129388 3.7 124 66 Tu 1 . - CDS 129284 - 129583 241 ## COG2827 Predicted endonuclease containing a URI domain - Prom 129610 - 129669 6.5 + Prom 129552 - 129611 3.6 125 67 Tu 1 . + CDS 129636 - 130079 377 ## COG3787 Uncharacterized protein conserved in bacteria + Term 130116 - 130148 3.1 126 68 Tu 1 . - CDS 130059 - 130577 363 ## COG0693 Putative intracellular protease/amidase + Prom 130515 - 130574 3.5 127 69 Tu 1 . + CDS 130706 - 131341 535 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases 128 70 Op 1 11/0.013 - CDS 131419 - 131994 578 ## COG2823 Predicted periplasmic or secreted lipoprotein 129 70 Op 2 11/0.013 - CDS 132004 - 132594 351 ## COG0279 Phosphoheptose isomerase 130 70 Op 3 10/0.065 - CDS 132629 - 133024 151 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 131 70 Op 4 . - CDS 132982 - 135033 2196 ## COG3107 Putative lipoprotein - Prom 135167 - 135226 3.4 + Prom 134981 - 135040 6.9 132 71 Tu 1 . + CDS 135098 - 135961 997 ## COG0313 Predicted methyltransferases 133 72 Op 1 2/0.571 - CDS 136103 - 136822 473 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 134 72 Op 2 13/0.013 - CDS 136875 - 137666 684 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 135 72 Op 3 13/0.013 - CDS 137656 - 138462 548 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 136 72 Op 4 3/0.519 - CDS 138516 - 138992 280 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - Prom 139039 - 139098 4.6 137 73 Op 1 3/0.519 - CDS 139181 - 140056 827 ## COG0191 Fructose/tagatose bisphosphate aldolase 138 73 Op 2 . - CDS 140069 - 141223 978 ## COG2222 Predicted phosphosugar isomerases - Prom 141315 - 141374 6.0 + Prom 141272 - 141331 5.2 139 74 Tu 1 . + CDS 141385 - 141618 92 ## - Term 141465 - 141503 6.1 140 75 Op 1 3/0.519 - CDS 141526 - 142659 766 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase 141 75 Op 2 4/0.351 - CDS 142656 - 143090 477 ## COG2893 Phosphotransferase system, mannose/fructose-specific component IIA 142 75 Op 3 13/0.013 - CDS 143107 - 143985 988 ## COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID 143 75 Op 4 13/0.013 - CDS 143975 - 144754 768 ## COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC 144 75 Op 5 1/0.675 - CDS 144765 - 145238 521 ## COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 145 75 Op 6 . - CDS 145258 - 146535 1026 ## COG4573 Predicted tagatose 6-phosphate kinase - Prom 146634 - 146693 5.5 + Prom 146578 - 146637 6.1 146 76 Tu 1 . + CDS 146803 - 147612 807 ## COG1349 Transcriptional regulators of sugar metabolism - Term 147608 - 147647 7.4 147 77 Tu 1 . - CDS 147673 - 149244 1604 ## COG2721 Altronate dehydratase 148 78 Op 1 6/0.091 + CDS 149649 - 150983 1637 ## COG0477 Permeases of the major facilitator superfamily 149 78 Op 2 1/0.675 + CDS 150999 - 151769 890 ## COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 150 78 Op 3 1/0.675 + CDS 151800 - 152690 1480 ## COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 151 79 Tu 1 . + CDS 152794 - 153939 1121 ## COG1929 Glycerate kinase + Prom 155207 - 155266 3.8 152 80 Op 1 4/0.351 + CDS 155295 - 156233 520 ## COG0583 Transcriptional regulator 153 80 Op 2 4/0.351 + CDS 156332 - 157321 899 ## COG1171 Threonine dehydratase 154 80 Op 3 3/0.519 + CDS 157344 - 158675 1553 ## COG0814 Amino acid permeases 155 80 Op 4 3/0.519 + CDS 158707 - 159915 1103 ## COG0282 Acetate kinase 156 80 Op 5 1/0.675 + CDS 159944 - 162238 2928 ## COG1882 Pyruvate-formate lyase 157 80 Op 6 1/0.675 + CDS 162252 - 162647 337 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 162654 - 162695 8.2 158 81 Tu 1 10/0.065 + CDS 162736 - 164100 1233 ## COG1760 L-serine deaminase + Term 164201 - 164230 1.2 + Prom 164298 - 164357 3.5 159 82 Op 1 3/0.519 + CDS 164456 - 165787 1606 ## COG0814 Amino acid permeases 160 82 Op 2 . + CDS 165812 - 167122 1353 ## COG3681 Uncharacterized conserved protein + Term 167168 - 167198 3.0 - Term 166906 - 166945 2.3 161 83 Op 1 . - CDS 167177 - 167350 211 ## gi|291086528|ref|ZP_06356077.2| putative cytoplasmic protein 162 83 Op 2 . - CDS 167353 - 168054 815 ## COG1741 Pirin-related protein - Prom 168076 - 168135 2.2 + Prom 168035 - 168094 3.1 163 84 Tu 1 . + CDS 168159 - 169055 867 ## COG0583 Transcriptional regulator + Term 169164 - 169214 -0.9 164 85 Tu 1 . - CDS 169153 - 169536 334 ## COG3152 Predicted membrane protein - Prom 169561 - 169620 7.1 - Term 169674 - 169705 0.0 165 86 Op 1 3/0.519 - CDS 169729 - 170715 1194 ## COG0435 Predicted glutathione S-transferase - Term 170729 - 170760 4.1 166 86 Op 2 . - CDS 170787 - 171179 488 ## COG2259 Predicted membrane protein - Prom 171260 - 171319 4.6 167 87 Op 1 . - CDS 171352 - 171651 272 ## CKO_04502 hypothetical protein 168 87 Op 2 7/0.078 - CDS 171651 - 172046 331 ## COG5393 Predicted membrane protein 169 87 Op 3 . - CDS 172049 - 172354 399 ## COG4575 Uncharacterized conserved protein 170 87 Op 4 . - CDS 172388 - 172756 429 ## CKO_04499 hypothetical protein - Prom 172838 - 172897 2.8 171 88 Op 1 . - CDS 172905 - 173288 393 ## CKO_04498 hypothetical protein 172 88 Op 2 . - CDS 173292 - 173954 604 ## COG0586 Uncharacterized membrane-associated protein - Prom 174124 - 174183 3.5 173 89 Tu 1 . - CDS 174302 - 175093 783 ## COG2186 Transcriptional regulators - Term 175146 - 175178 5.0 174 90 Tu 1 . - CDS 175213 - 176514 1597 ## COG0477 Permeases of the major facilitator superfamily + Prom 176813 - 176872 3.1 175 91 Op 1 3/0.519 + CDS 176987 - 178399 1692 ## COG1904 Glucuronate isomerase 176 91 Op 2 . + CDS 178415 - 179902 1551 ## COG2721 Altronate dehydratase 177 92 Op 1 . - CDS 180246 - 181490 1472 ## COG3633 Na+/serine symporter 178 92 Op 2 . - CDS 181432 - 181638 94 ## - Prom 181664 - 181723 5.6 - Term 181666 - 181719 12.1 179 93 Tu 1 3/0.519 - CDS 181735 - 182778 1285 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 182911 - 182970 5.6 - Term 182907 - 182955 6.3 180 94 Op 1 1/0.675 - CDS 182972 - 183970 1020 ## COG0673 Predicted dehydrogenases and related proteins 181 94 Op 2 . - CDS 184043 - 184543 587 ## COG1451 Predicted metal-dependent hydrolase - Prom 184564 - 184623 4.3 + Prom 184525 - 184584 6.0 182 95 Tu 1 . + CDS 184628 - 185764 435 ## PROTEIN SUPPORTED gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative + Term 185768 - 185823 0.1 183 96 Tu 1 . - CDS 186222 - 188240 2134 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 188282 - 188341 5.7 184 97 Op 1 . - CDS 188471 - 190822 2526 ## ECO111_3902 putative glycosyl hydrolase 185 97 Op 2 . - CDS 190865 - 191941 1003 ## ECUMN_3562 hypothetical protein 186 98 Op 1 . - CDS 192074 - 193573 1249 ## COG0531 Amino acid transporters 187 98 Op 2 1/0.675 - CDS 193672 - 196818 2165 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 196838 - 196897 4.8 - Term 197206 - 197243 6.2 188 99 Tu 1 . - CDS 197251 - 198234 801 ## COG1609 Transcriptional regulators - Prom 198357 - 198416 4.5 + Prom 198303 - 198362 4.1 189 100 Tu 1 . + CDS 198386 - 198718 368 ## COG0073 EMAP domain + Term 198748 - 198804 18.4 190 101 Tu 1 . - CDS 198796 - 200085 1164 ## COG4992 Ornithine/acetylornithine aminotransferase + Prom 200444 - 200503 4.0 191 102 Tu 1 . + CDS 200606 - 202126 1391 ## COG0840 Methyl-accepting chemotaxis protein + Term 202202 - 202241 0.6 - Term 202044 - 202096 2.1 192 103 Tu 1 . - CDS 202123 - 202737 677 ## COG1695 Predicted transcriptional regulators - Prom 202762 - 202821 5.1 + Prom 202773 - 202832 7.2 193 104 Tu 1 . + CDS 202853 - 203749 626 ## COG2375 Siderophore-interacting protein + Term 203797 - 203857 3.6 194 105 Tu 1 . - CDS 203750 - 204487 542 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 204590 - 204649 4.1 + Prom 204588 - 204647 4.3 195 106 Tu 1 . + CDS 204667 - 205821 1155 ## COG2230 Cyclopropane fatty acid synthase and related methyltransferases + Term 205882 - 205918 -0.4 - Term 206073 - 206117 1.5 196 107 Tu 1 . - CDS 206198 - 207856 1914 ## COG2376 Dihydroxyacetone kinase - Prom 208105 - 208164 1.9 + Prom 208222 - 208281 3.8 197 108 Op 1 . + CDS 208418 - 209515 1313 ## COG0371 Glycerol dehydrogenase and related enzymes + Term 209550 - 209588 5.3 198 108 Op 2 . + CDS 209606 - 211531 1914 ## COG3284 Transcriptional activator of acetoin/glycerol metabolism + Term 211649 - 211699 -0.4 - Term 211243 - 211274 -0.7 199 109 Op 1 . - CDS 211509 - 212039 729 ## COG2096 Uncharacterized conserved protein 200 109 Op 2 . - CDS 212040 - 212393 332 ## KP1_4786 glycerol dehydratase-reactivation factor 201 109 Op 3 . - CDS 212410 - 213573 1684 ## COG1454 Alcohol dehydrogenase, class IV 202 109 Op 4 . - CDS 213596 - 214024 323 ## COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol - Prom 214249 - 214308 6.7 + Prom 214246 - 214305 11.3 203 110 Op 1 . + CDS 214416 - 216083 1919 ## COG4909 Propanediol dehydratase, large subunit 204 110 Op 2 1/0.675 + CDS 216095 - 216679 646 ## COG4909 Propanediol dehydratase, large subunit 205 110 Op 3 . + CDS 216682 - 217110 472 ## COG4910 Propanediol dehydratase, small subunit 206 110 Op 4 . + CDS 217121 - 218935 1999 ## KPN_03486 glycerol dehyrdratase activator 207 111 Tu 1 . + CDS 219069 - 219368 279 ## STM0327 cytoplasmic protein + Prom 219508 - 219567 8.1 208 112 Op 1 30/0.000 + CDS 219666 - 221087 1061 ## COG0065 3-isopropylmalate dehydratase large subunit 209 112 Op 2 . + CDS 221089 - 221715 587 ## COG0066 3-isopropylmalate dehydratase small subunit 210 112 Op 3 4/0.351 + CDS 221777 - 222691 598 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 211 112 Op 4 . + CDS 222725 - 223693 601 ## COG0583 Transcriptional regulator 212 113 Tu 1 . - CDS 223753 - 226599 1108 ## COG3468 Type V secretory pathway, adhesin AidA - Prom 226716 - 226775 5.8 - Term 226837 - 226882 4.1 213 114 Op 1 . - CDS 226924 - 227781 693 ## Ent638_3408 outer membrane autotransporter 214 114 Op 2 . - CDS 227815 - 229554 921 ## gi|291086554|ref|ZP_06356131.2| hypothetical protein CIT292_10850 - Prom 229773 - 229832 5.9 215 115 Tu 1 . - CDS 229951 - 230352 231 ## Ctu_00330 hypothetical protein - Prom 230430 - 230489 4.9 - Term 230600 - 230635 1.1 216 116 Tu 1 . - CDS 230815 - 231561 -3 ## SCAB_41031 hypothetical protein - Prom 231722 - 231781 2.8 - Term 232118 - 232153 1.1 217 117 Tu 1 . - CDS 232159 - 232341 222 ## EC55989_2601 hypothetical protein - Prom 232586 - 232645 4.9 - TRNA 232508 - 232583 93.9 # Met CAT 0 0 + Prom 232623 - 232682 7.1 218 118 Tu 1 . + CDS 232708 - 233214 465 ## COG3663 G:T/U mismatch-specific DNA glycosylase + Term 233232 - 233278 -0.4 - Term 233221 - 233259 1.3 219 119 Tu 1 . - CDS 233267 - 233842 292 ## COG3236 Uncharacterized protein conserved in bacteria - Term 233854 - 233887 3.8 220 120 Op 1 31/0.000 - CDS 233920 - 235767 2510 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 235839 - 235898 1.9 221 120 Op 2 . - CDS 236052 - 237797 1544 ## COG0358 DNA primase (bacterial type) - Prom 237982 - 238041 3.8 222 121 Tu 1 . + CDS 237669 - 237989 96 ## - Term 238011 - 238051 6.1 223 122 Tu 1 . - CDS 238099 - 238314 357 ## PROTEIN SUPPORTED gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21 - Prom 238378 - 238437 5.7 + Prom 238468 - 238527 4.1 224 123 Tu 1 . + CDS 238551 - 239564 671 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 239809 - 239846 -0.2 225 124 Op 1 17/0.000 - CDS 239651 - 240268 918 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 226 124 Op 2 16/0.000 - CDS 240278 - 240943 474 ## COG0830 Urease accessory protein UreF 227 124 Op 3 10/0.065 - CDS 240933 - 241391 462 ## COG2371 Urease accessory protein UreE 228 124 Op 4 17/0.000 - CDS 241401 - 243104 1793 ## COG0804 Urea amidohydrolase (urease) alpha subunit 229 124 Op 5 13/0.013 - CDS 243097 - 243417 276 ## COG0832 Urea amidohydrolase (urease) beta subunit 230 124 Op 6 8/0.065 - CDS 243427 - 243729 476 ## COG0831 Urea amidohydrolase (urease) gamma subunit 231 124 Op 7 . - CDS 243740 - 244480 579 ## COG0829 Urease accessory protein UreH - Prom 244599 - 244658 2.4 - Term 244646 - 244678 4.5 232 125 Op 1 3/0.519 - CDS 244687 - 246150 1733 ## COG0471 Di- and tricarboxylate transporters - Term 246160 - 246192 6.3 233 125 Op 2 11/0.013 - CDS 246200 - 246829 254 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase 234 125 Op 3 . - CDS 246802 - 247710 262 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase - Prom 247741 - 247800 3.8 + Prom 247668 - 247727 5.1 235 126 Tu 1 . + CDS 247924 - 248865 837 ## COG0583 Transcriptional regulator + Term 248884 - 248918 0.2 236 127 Tu 1 . - CDS 248897 - 249514 485 ## COG0344 Predicted membrane protein - Prom 249554 - 249613 2.3 + Prom 249483 - 249542 2.8 237 128 Op 1 4/0.351 + CDS 249621 - 249989 337 ## COG1539 Dihydroneopterin aldolase 238 128 Op 2 . + CDS 250076 - 250894 1042 ## COG1968 Uncharacterized bacitracin resistance protein + Term 250919 - 250976 15.2 - Term 250895 - 250932 -0.1 239 129 Op 1 7/0.078 - CDS 250992 - 252233 1311 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 240 129 Op 2 . - CDS 252296 - 252916 881 ## COG3103 SH3 domain protein - Prom 252943 - 253002 2.2 241 130 Tu 1 . + CDS 253159 - 254460 1362 ## COG3025 Uncharacterized conserved protein 242 131 Op 1 5/0.182 + CDS 254569 - 257409 3181 ## COG1391 Glutamine synthetase adenylyltransferase 243 131 Op 2 . + CDS 257469 - 258902 1891 ## COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase - Term 258925 - 258970 12.1 244 132 Op 1 . - CDS 259006 - 260673 1982 ## COG2268 Uncharacterized protein conserved in bacteria 245 132 Op 2 . - CDS 260703 - 261332 546 ## ROD_35931 hypothetical protein - Prom 261401 - 261460 3.2 246 133 Tu 1 . + CDS 261601 - 261801 205 ## CKO_04437 glycogen synthesis protein GlgS + Term 261813 - 261884 7.3 - Term 261794 - 261830 3.0 247 134 Tu 1 . - CDS 261835 - 262131 522 ## COG2960 Uncharacterized protein conserved in bacteria - Prom 262159 - 262218 3.0 248 135 Tu 1 . + CDS 262520 - 263173 827 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase + Term 263205 - 263255 11.2 + Prom 263396 - 263455 6.4 249 136 Tu 1 . + CDS 263604 - 263780 184 ## SPAB_03984 hypothetical protein + Term 263805 - 263851 2.2 250 137 Tu 1 . - CDS 263846 - 264619 831 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 264659 - 264718 1.7 + Prom 264618 - 264677 3.2 251 138 Tu 1 . + CDS 264767 - 265555 929 ## COG3384 Uncharacterized conserved protein - Term 265548 - 265586 0.1 252 139 Op 1 5/0.182 - CDS 265640 - 266725 1276 ## COG0754 Glutathionylspermidine synthase 253 139 Op 2 . - CDS 266806 - 267483 574 ## COG5463 Predicted integral membrane protein - Prom 267512 - 267571 2.6 254 140 Tu 1 . - CDS 267632 - 269107 1900 ## COG1538 Outer membrane protein - Prom 269224 - 269283 6.3 + Prom 269097 - 269156 5.2 255 141 Op 1 8/0.065 + CDS 269313 - 269945 573 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 256 141 Op 2 7/0.078 + CDS 269942 - 270364 209 ## COG3151 Uncharacterized protein conserved in bacteria 257 141 Op 3 7/0.078 + CDS 270389 - 271216 582 ## COG1409 Predicted phosphohydrolases 258 141 Op 4 7/0.078 + CDS 271216 - 271797 463 ## COG3150 Predicted esterase 259 141 Op 5 . + CDS 271826 - 273718 2259 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 260 142 Tu 1 . - CDS 273816 - 274667 823 ## COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - Prom 274696 - 274755 2.5 + Prom 274675 - 274734 3.4 261 143 Op 1 1/0.675 + CDS 274833 - 276653 1511 ## COG4289 Uncharacterized protein conserved in bacteria 262 143 Op 2 . + CDS 276664 - 277932 1110 ## COG0477 Permeases of the major facilitator superfamily 263 143 Op 3 . + CDS 277956 - 279146 1204 ## CKO_04418 hypothetical protein 264 144 Op 1 4/0.351 - CDS 279229 - 279543 418 ## COG1359 Uncharacterized conserved protein 265 144 Op 2 2/0.571 - CDS 279574 - 280155 704 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - Prom 280181 - 280240 3.7 266 145 Op 1 40/0.000 - CDS 280265 - 281563 1185 ## COG0642 Signal transduction histidine kinase 267 145 Op 2 . - CDS 281611 - 282270 814 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Prom 282329 - 282388 4.0 268 146 Tu 1 . + CDS 282422 - 282817 532 ## COG3111 Uncharacterized conserved protein + Term 282827 - 282856 3.5 + Prom 282829 - 282888 1.8 269 147 Tu 1 . + CDS 282936 - 285194 2598 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Prom 285309 - 285368 2.6 270 148 Op 1 7/0.078 + CDS 285390 - 286127 567 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 271 148 Op 2 2/0.571 + CDS 286199 - 287611 1310 ## COG2132 Putative multicopper oxidases + Term 287674 - 287705 0.4 + Prom 287707 - 287766 7.2 272 149 Tu 1 . + CDS 287800 - 289971 2476 ## COG1032 Fe-S oxidoreductase + Term 290090 - 290122 5.0 - Term 289983 - 290037 6.1 273 150 Op 1 . - CDS 290074 - 290529 444 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 274 150 Op 2 . - CDS 290573 - 292027 1689 ## COG0471 Di- and tricarboxylate transporters - Prom 292047 - 292106 4.5 - Term 292171 - 292202 3.1 275 151 Tu 1 . - CDS 292216 - 293043 845 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase 276 152 Tu 1 . - CDS 293147 - 294310 1643 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - Prom 294364 - 294423 2.0 277 153 Tu 1 . + CDS 294487 - 295404 548 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 295453 - 295481 1.3 278 154 Tu 1 . - CDS 295495 - 296154 694 ## COG0586 Uncharacterized membrane-associated protein - Prom 296180 - 296239 2.1 - Term 296223 - 296263 -0.2 279 155 Tu 1 . - CDS 296286 - 297473 1243 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 297624 - 297683 3.7 + Prom 297460 - 297519 3.6 280 156 Op 1 30/0.000 + CDS 297739 - 298458 936 ## COG0811 Biopolymer transport proteins 281 156 Op 2 . + CDS 298465 - 298890 589 ## COG0848 Biopolymer transport protein + Term 298899 - 298939 4.0 - Term 298707 - 298746 -0.0 282 157 Op 1 . - CDS 298964 - 299371 428 ## CKO_04399 hypothetical protein 283 157 Op 2 . - CDS 299358 - 299777 210 ## CKO_04398 hypothetical protein - Prom 299844 - 299903 7.3 + Prom 299754 - 299813 2.3 284 158 Tu 1 . + CDS 299880 - 300383 279 ## SeHA_C3402 hypothetical protein - Term 300372 - 300429 4.0 285 159 Tu 1 . - CDS 300440 - 301480 1356 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 301515 - 301574 3.4 + Prom 301718 - 301777 4.9 286 160 Op 1 . + CDS 301963 - 303603 1352 ## COG0840 Methyl-accepting chemotaxis protein + Prom 303608 - 303667 5.0 287 160 Op 2 . + CDS 303689 - 303976 233 ## EFER_2941 hypothetical protein + Prom 304004 - 304063 4.1 288 161 Op 1 4/0.351 + CDS 304167 - 305285 940 ## COG1740 Ni,Fe-hydrogenase I small subunit 289 161 Op 2 6/0.091 + CDS 305288 - 306274 864 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 290 161 Op 3 4/0.351 + CDS 306264 - 307442 1372 ## COG5557 Polysulphide reductase 291 161 Op 4 5/0.182 + CDS 307439 - 309142 2022 ## COG0374 Ni,Fe-hydrogenase I large subunit 292 161 Op 5 . + CDS 309142 - 309636 425 ## COG0680 Ni,Fe-hydrogenase maturation factor 293 161 Op 6 . + CDS 309629 - 310117 431 ## APECO1_3430 hydrogenase 2-specific chaperone 294 161 Op 7 4/0.351 + CDS 310110 - 310451 225 ## COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) 295 161 Op 8 . + CDS 310482 - 310730 278 ## COG0298 Hydrogenase maturation factor + Term 310780 - 310823 4.1 - Term 310662 - 310700 -0.8 296 162 Tu 1 . - CDS 310819 - 311685 995 ## COG0625 Glutathione S-transferase - Prom 311799 - 311858 4.0 + Prom 311687 - 311746 2.2 297 163 Tu 1 . + CDS 311904 - 314192 1742 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing + Term 314213 - 314252 1.6 + Prom 314196 - 314255 1.8 298 164 Tu 1 . + CDS 314346 - 316208 2018 ## COG0754 Glutathionylspermidine synthase + Term 316242 - 316275 5.4 + Prom 316210 - 316269 4.7 299 165 Tu 1 . + CDS 316414 - 316536 67 ## - Term 316230 - 316263 5.4 300 166 Tu 1 . - CDS 316488 - 316718 102 ## COG3209 Rhs family protein - Prom 316742 - 316801 1.6 301 167 Tu 1 . + CDS 316949 - 317581 384 ## gi|291086584|ref|ZP_06356217.2| conserved hypothetical protein 302 168 Op 1 . - CDS 318196 - 318366 62 ## gi|291086585|ref|ZP_06571570.1| long-chain fatty acid transport protein, outer membrane protein 303 168 Op 2 . - CDS 318378 - 318896 304 ## COG3196 Uncharacterized protein conserved in bacteria - Prom 318976 - 319035 2.5 304 169 Tu 1 . - CDS 319037 - 319294 145 ## COG4644 Transposase and inactivated derivatives, TnpA family - Prom 319374 - 319433 1.9 305 170 Op 1 . - CDS 319493 - 319840 74 ## EbC_05870 conserved uncharacterized protein 306 170 Op 2 . - CDS 319843 - 320706 48 ## COG1705 Muramidase (flagellum-specific) 307 170 Op 3 2/0.571 - CDS 320742 - 321221 463 ## COG3157 Hemolysin-coregulated protein (uncharacterized) 308 170 Op 4 5/0.182 - CDS 321239 - 322582 860 ## COG3515 Uncharacterized protein conserved in bacteria 309 171 Op 1 5/0.182 - CDS 322794 - 326312 2672 ## COG3523 Uncharacterized protein conserved in bacteria 310 171 Op 2 . - CDS 326331 - 327761 944 ## COG3515 Uncharacterized protein conserved in bacteria 311 171 Op 3 . - CDS 327766 - 328341 315 ## ECO103_0217 hypothetical protein 312 172 Op 1 4/0.351 - CDS 328479 - 331157 1122 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 313 172 Op 2 8/0.065 - CDS 331169 - 331987 651 ## COG3455 Uncharacterized protein conserved in bacteria 314 172 Op 3 8/0.065 - CDS 331992 - 333335 1002 ## COG3522 Uncharacterized protein conserved in bacteria 315 172 Op 4 6/0.091 - CDS 333338 - 333871 409 ## COG3521 Uncharacterized protein conserved in bacteria 316 172 Op 5 6/0.091 - CDS 333868 - 335166 1023 ## COG3456 Uncharacterized conserved protein, contains FHA domain 317 172 Op 6 9/0.065 - CDS 335171 - 336214 707 ## COG3520 Uncharacterized protein conserved in bacteria 318 172 Op 7 8/0.065 - CDS 336181 - 338013 1145 ## COG3519 Uncharacterized protein conserved in bacteria 319 172 Op 8 5/0.182 - CDS 338019 - 338441 117 ## COG3518 Uncharacterized protein conserved in bacteria 320 172 Op 9 6/0.091 - CDS 338447 - 339931 1440 ## COG3517 Uncharacterized protein conserved in bacteria 321 172 Op 10 . - CDS 339951 - 340457 400 ## COG3516 Uncharacterized protein conserved in bacteria - Prom 340592 - 340651 6.3 + Prom 341074 - 341133 2.7 322 173 Tu 1 3/0.519 + CDS 341198 - 341716 609 ## COG3157 Hemolysin-coregulated protein (uncharacterized) + Term 341726 - 341767 6.3 + Prom 341751 - 341810 1.9 323 174 Op 1 . + CDS 341927 - 343915 1472 ## COG3501 Uncharacterized protein conserved in bacteria 324 174 Op 2 . + CDS 343930 - 344985 271 ## COG5351 Uncharacterized protein conserved in bacteria 325 174 Op 3 . + CDS 344978 - 349810 1962 ## COG3209 Rhs family protein 326 174 Op 4 . + CDS 349814 - 350068 94 ## RCFBP_10027 hypothetical protein - Term 350132 - 350172 3.1 327 175 Tu 1 . - CDS 350256 - 350411 147 ## SEN0274 hypothetical protein - Prom 350658 - 350717 4.6 + Prom 350421 - 350480 3.1 328 176 Tu 1 . + CDS 350652 - 350996 176 ## Pat9b_2498 hypothetical protein + Term 351006 - 351041 3.3 - Term 351355 - 351398 -1.0 329 177 Op 1 . - CDS 351578 - 352870 777 ## COG0477 Permeases of the major facilitator superfamily 330 177 Op 2 . - CDS 352863 - 353852 779 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases 331 177 Op 3 . - CDS 353849 - 354280 277 ## RER_37200 MarR family transcriptional regulator - Prom 354364 - 354423 5.5 + Prom 355815 - 355874 3.8 332 178 Tu 1 . + CDS 355937 - 356230 131 ## KP1_4250 putative chaperone 333 179 Tu 1 . + CDS 356607 - 358712 777 ## COG3188 P pilus assembly protein, porin PapC + Prom 359236 - 359295 3.8 334 180 Tu 1 . + CDS 359380 - 359616 136 ## gi|291086598|ref|ZP_06571579.1| putative fimbrial protein + Term 359631 - 359662 3.4 - Term 359610 - 359658 9.2 335 181 Tu 1 . - CDS 359669 - 360202 173 ## gi|283836513|ref|ZP_06356254.1| putative type-1 fimbrial protein, C chain - Prom 360227 - 360286 7.8 336 182 Tu 1 . - CDS 360739 - 360963 337 ## COG0582 Integrase 337 183 Tu 1 . - CDS 361066 - 361221 56 ## gi|291086599|ref|ZP_06571580.1| conserved hypothetical protein - Prom 361294 - 361353 5.2 338 184 Tu 1 . + CDS 361512 - 361718 231 ## COG3335 Transposase and inactivated derivatives - Term 362252 - 362296 14.8 339 185 Op 1 . - CDS 362319 - 363251 337 ## SARI_03891 hypothetical protein - Prom 363347 - 363406 80.3 340 185 Op 2 . - CDS 363408 - 363992 577 ## SARI_03891 hypothetical protein - Prom 364094 - 364153 80.3 341 186 Op 1 . - CDS 364155 - 366143 1694 ## ESA_00987 hypothetical protein 342 186 Op 2 . - CDS 366199 - 366414 71 ## gi|291086601|ref|ZP_06571582.1| conserved hypothetical protein - Prom 366565 - 366624 3.4 343 187 Tu 1 . + CDS 367233 - 367454 135 ## COG2801 Transposase and inactivated derivatives 344 188 Tu 1 12/0.013 + CDS 368692 - 368928 186 ## COG0582 Integrase + Prom 368930 - 368989 80.3 345 189 Op 1 . + CDS 369063 - 369875 608 ## COG0582 Integrase + Term 369900 - 369944 10.3 + Prom 369918 - 369977 3.2 346 189 Op 2 . + CDS 370200 - 371804 1329 ## SARI_03145 hypothetical protein 347 190 Tu 1 . - CDS 371700 - 372047 345 ## - Prom 372265 - 372324 5.3 348 191 Tu 1 . - CDS 372406 - 372681 206 ## gi|283836526|ref|ZP_06356267.1| conserved hypothetical protein - Prom 372773 - 372832 3.3 - Term 372977 - 373019 5.2 349 192 Tu 1 . - CDS 373061 - 374323 398 ## PROTEIN SUPPORTED gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 - Term 375028 - 375066 2.2 350 193 Tu 1 . - CDS 375225 - 375725 278 ## COG3335 Transposase and inactivated derivatives - Prom 375783 - 375842 3.1 + Prom 375633 - 375692 2.7 351 194 Tu 1 . + CDS 375919 - 376119 150 ## COG4584 Transposase and inactivated derivatives - Term 375873 - 375903 -0.9 352 195 Tu 1 . - CDS 376078 - 376395 88 ## gi|253801081|ref|YP_003034082.1| hypothetical protein pVir_106 - Prom 376513 - 376572 3.2 353 196 Op 1 9/0.065 + CDS 376306 - 376938 215 ## COG4584 Transposase and inactivated derivatives 354 196 Op 2 . + CDS 376938 - 377735 587 ## COG1484 DNA replication protein - Term 377523 - 377570 1.0 355 197 Tu 1 . - CDS 377750 - 377968 99 ## gi|283836531|ref|ZP_06356272.1| transposase + Prom 377963 - 378022 2.8 356 198 Op 1 6/0.091 + CDS 378078 - 378308 80 ## COG2963 Transposase and inactivated derivatives 357 198 Op 2 5/0.182 + CDS 378305 - 378496 233 ## COG3436 Transposase and inactivated derivatives 358 198 Op 3 5/0.182 + CDS 378423 - 379424 388 ## COG3436 Transposase and inactivated derivatives 359 198 Op 4 . + CDS 379497 - 379709 91 ## COG3436 Transposase and inactivated derivatives 360 199 Tu 1 . - CDS 379746 - 381167 484 ## AciX9_1722 transposase IS4 family protein - Prom 381199 - 381258 4.2 + Prom 381168 - 381227 2.4 361 200 Tu 1 . + CDS 381293 - 381547 64 ## COG3335 Transposase and inactivated derivatives - Term 381268 - 381324 2.6 362 201 Tu 1 . - CDS 381553 - 382155 267 ## COG0840 Methyl-accepting chemotaxis protein - Prom 382291 - 382350 7.2 - Term 383460 - 383500 -0.5 363 202 Tu 1 . - CDS 383532 - 385859 426 ## VPA1373 hypothetical protein - Prom 386106 - 386165 4.8 - Term 386116 - 386148 4.0 364 203 Tu 1 . - CDS 386167 - 386949 284 ## gi|291086621|ref|ZP_06356281.2| hypothetical protein CIT292_11024 365 204 Tu 1 . - CDS 387093 - 387725 -84 ## gi|283836541|ref|ZP_06356282.1| conserved hypothetical protein - Prom 387892 - 387951 2.5 366 205 Tu 1 . - CDS 388683 - 390425 696 ## gi|283836542|ref|ZP_06356283.1| translocated intimin receptor intimin-binding domain protein - Prom 390471 - 390530 2.3 + Prom 390345 - 390404 5.5 367 206 Op 1 . + CDS 390638 - 391081 239 ## gi|283836543|ref|ZP_06356284.1| putative secretion system apparatus SsaB 368 206 Op 2 . + CDS 391174 - 392589 475 ## COG1450 Type II secretory pathway, component PulD 369 206 Op 3 . + CDS 392600 - 393856 471 ## YPTB0313 type-III secretion protein, EscD/SpiB 370 206 Op 4 . + CDS 393864 - 394103 74 ## 371 206 Op 5 . + CDS 394137 - 394490 127 ## gi|283836546|ref|ZP_06356287.1| conserved hypothetical protein 372 206 Op 6 . + CDS 394523 - 395122 278 ## gi|283836547|ref|ZP_06356288.1| conserved hypothetical protein 373 206 Op 7 . + CDS 395138 - 395923 374 ## gi|291086624|ref|ZP_06356289.2| hypothetical protein CIT292_11032 374 206 Op 8 . + CDS 395947 - 396678 400 ## gi|291086625|ref|ZP_06356290.2| conserved hypothetical protein + Term 396685 - 396720 6.5 375 207 Op 1 . + CDS 396735 - 396950 260 ## gi|291086626|ref|ZP_06356291.2| type III secretion apparatus needle protein 376 207 Op 2 . + CDS 396980 - 397213 127 ## gi|283836551|ref|ZP_06356292.1| hypothetical protein CIT292_11035 377 207 Op 3 . + CDS 397214 - 397582 115 ## gi|283836552|ref|ZP_06356293.1| putative type III secretion apparatus + Term 397626 - 397660 3.5 + Prom 397604 - 397663 5.2 378 208 Op 1 . + CDS 397684 - 398322 414 ## COG4669 Type III secretory pathway, lipoprotein EscJ 379 208 Op 2 . + CDS 398326 - 398928 285 ## CV_2589 hypothetical protein 380 208 Op 3 . + CDS 398946 - 399626 563 ## gi|283836555|ref|ZP_06356296.1| hypothetical protein CIT292_11039 381 208 Op 4 . + CDS 399652 - 400674 484 ## CV_2590 secretion system apparatus + Term 400765 - 400826 0.0 + Prom 400841 - 400900 2.8 382 209 Tu 1 . + CDS 401082 - 403124 930 ## COG4789 Type III secretory pathway, component EscV + Prom 403446 - 403505 3.8 383 210 Op 1 . + CDS 403670 - 404449 272 ## COG1157 Flagellar biosynthesis/type III secretory pathway ATPase 384 210 Op 2 . + CDS 404458 - 404844 234 ## gi|283836560|ref|ZP_06356301.1| conserved hypothetical protein + Prom 405244 - 405303 2.3 385 211 Tu 1 . + CDS 405399 - 406151 12 ## YE105_C0336 type III secretion system apparatus protein + Term 406307 - 406348 0.5 + Prom 406204 - 406263 4.7 386 212 Op 1 7/0.078 + CDS 406358 - 406807 254 ## COG4790 Type III secretory pathway, component EscR 387 212 Op 2 8/0.065 + CDS 406820 - 407080 190 ## COG4794 Type III secretory pathway, component EscS + Term 407253 - 407301 -0.6 + Prom 407255 - 407314 9.7 388 213 Tu 1 . + CDS 407401 - 407880 103 ## COG4791 Type III secretory pathway, component EscT + Term 407953 - 407998 2.4 + Prom 408412 - 408471 4.4 389 214 Op 1 . + CDS 408522 - 408920 104 ## COG4792 Type III secretory pathway, component EscU + Prom 408924 - 408983 5.1 390 214 Op 2 . + CDS 409008 - 410042 405 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins + Term 410233 - 410271 6.1 + Prom 410457 - 410516 4.3 391 215 Tu 1 . + CDS 410661 - 411125 143 ## gi|291086631|ref|ZP_06571594.1| hypothetical protein CIT292_11052 392 216 Tu 1 . + CDS 411528 - 412139 -8 ## gi|291086632|ref|ZP_06356311.2| hypothetical protein CIT292_11053 + Term 412146 - 412195 11.1 - Term 412134 - 412182 6.9 393 217 Op 1 . - CDS 412197 - 412607 131 ## gi|283836571|ref|ZP_06356312.1| conserved hypothetical protein 394 217 Op 2 . - CDS 412628 - 413179 163 ## gi|291086633|ref|ZP_06356313.2| hypothetical protein CIT292_11055 395 217 Op 3 . - CDS 413194 - 414195 348 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis - Prom 414251 - 414310 2.2 396 218 Tu 1 . - CDS 414332 - 414745 151 ## gi|291086634|ref|ZP_06356315.2| conserved hypothetical protein - Prom 414830 - 414889 2.2 + Prom 415006 - 415065 6.3 397 219 Op 1 . + CDS 415209 - 415814 212 ## Rahaq_3523 fimbrial protein domain-containing protein 398 219 Op 2 10/0.065 + CDS 415847 - 416575 126 ## COG3121 P pilus assembly protein, chaperone PapD + Term 416645 - 416700 -0.9 + Prom 417345 - 417404 4.4 399 220 Op 1 6/0.091 + CDS 417426 - 419768 619 ## COG3188 P pilus assembly protein, porin PapC 400 220 Op 2 . + CDS 419801 - 420385 288 ## COG3539 P pilus assembly protein, pilin FimA 401 220 Op 3 . + CDS 420410 - 420967 369 ## Rahaq_3527 fimbrial protein domain-containing protein 402 220 Op 4 . + CDS 421036 - 421524 140 ## ECL_00937 putative fimbrial protein 403 220 Op 5 . + CDS 421575 - 422648 187 ## COG3539 P pilus assembly protein, pilin FimA + Term 422667 - 422701 7.6 Predicted protein(s) >gi|283548474|gb|GG730303.1| GENE 1 1207 - 1965 539 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 12 250 1 242 245 212 45 2e-53 MNQLLMPSTDAMITLENVNKWYGQFHVLKNINLQVKQGERIVLCGPSGSGKSTTIRCINH LEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPVWVQKMP KKEAEALAMHYLERVRIAEHAHKYPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDP EMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDLGEIVEQAPPDEFFANPRS ERTRAFLSQVIH >gi|283548474|gb|GG730303.1| GENE 2 1973 - 3076 687 367 aa, chain - ## HITS:1 COG:ECs4143 KEGG:ns NR:ns ## COG: ECs4143 COG0765 # Protein_GI_number: 15833397 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1 367 2 368 368 629 91.0 1e-180 MTKVLLSPASRQSSNPVSRWLFWVRKNLFSSWSNSLLTLLCVWLIWSFLPPLLNWVFFQA NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINMALIIGLLSIVPMFCKTLP HRGRYIAVWAVVYPLVVWWLMYGGFFGLERVETRQWGGLTLTLIIASVGIAGALPWGILL ALGRRSHMPVVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMSEGTSIDKLIRALVGVIL FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRF NTGRTPH >gi|283548474|gb|GG730303.1| GENE 3 3086 - 4267 759 393 aa, chain - ## HITS:1 COG:ECs4142 KEGG:ns NR:ns ## COG: ECs4142 COG4597 # Protein_GI_number: 15833396 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Escherichia coli O157:H7 # 1 393 7 399 399 622 84.0 1e-178 MFHRRLTVKGSLSFSNPAVRAWLFQLLAVIAVISIAVYLIHNTINNLSSRGITSGFSFLD RSAGFGIVQHLIDYEQGDTYGRVFLVGLLNTLLVSALCIVFASFLGFFLGLARLSDNWLL RKLSTVYIETFRNIPPLLQIFFWYFAVLRNLPGPRQAVNALDLMFLSNRGLYIPAPQMGE GLFAFCTAVLIAIAVTFGLFRFNRMHQIKTGQLRRTWPTALALFMFLPMISQWFFGAALH WDIPELRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGL PNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAI ETIAITMSVYLIISLSISLLMNIYNRRIALIER >gi|283548474|gb|GG730303.1| GENE 4 4337 - 5362 1089 341 aa, chain - ## HITS:1 COG:yhdW KEGG:ns NR:ns ## COG: yhdW COG0834 # Protein_GI_number: 16131156 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Escherichia coli K12 # 37 341 1 305 305 610 96.0 1e-174 MKKMIIASLAAAGVLLAIANQAHAGATLDAVKKKGFVQCGISDGLPGFSYADASGKFSGI DVDVCRGVASAVFGDDSKVKYTPLTAKERFTALQSGEVDMLSRNTTWTSSRDAGMGMSFT GVTYYDGIGFLTHNKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRS DESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFS IVRWTLFAMLNAEEMGVNSKNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIK QVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR >gi|283548474|gb|GG730303.1| GENE 5 5818 - 6039 197 73 aa, chain - ## HITS:1 COG:no KEGG:ECO103_4006 NR:ns ## KEGG: ECO103_4006 # Name: yhdV # Def: putative outer membrane protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 73 1 73 73 109 93.0 4e-23 MKRLISVALLTAFLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAA VAGLTLGIVALTK >gi|283548474|gb|GG730303.1| GENE 6 6311 - 9424 3246 1037 aa, chain - ## HITS:1 COG:STM3391 KEGG:ns NR:ns ## COG: STM3391 COG0841 # Protein_GI_number: 16766686 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Salmonella typhimurium LT2 # 1 1037 1 1037 1037 1911 95.0 0 MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVSISATYPGADAQTVQDT VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ EVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGVGDVQLFGA QYAMRIWLDANLLNKYQLTPVDVINQLQVQNDQIAAGQLGGTPALPNQQLNASIIAQTRL KDPEEFGKVTLRVNSDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANAL DTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIHEVVKTLFEAIILVFLVMYLFLQ NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM MEDNLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL SVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNAKFDHSVNHYTNSVSGIVRKTGRY LIVYLIIVIGMAVLFMRLPTSFLPDEDQGVFMTMIQLPAGATQERTQKVLDQVTHYYLNN EKANVESVFTVNGFSFSGQGQNSGLAFVSLKPWDERSGKENSVEAVIARATRAFSQIRDG LVFPFNMPAIVELGTATGFDFELIDQGGLGHAALTQARNQLLGMVAKHPDLLVRVRPNGL EDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAKYRM LPADINNLYVRSSNGEMVPFSAFSASHWVYGSPRLERYNGMPSMELLGEAAPGRSTGEAM ALMESLAEKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSV MLVVPLGVVGALLAASIRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLI EATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFF VPVFFVVVRRRFSRHND >gi|283548474|gb|GG730303.1| GENE 7 9436 - 10596 873 386 aa, chain - ## HITS:1 COG:STM3390 KEGG:ns NR:ns ## COG: STM3390 COG0845 # Protein_GI_number: 16766685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Salmonella typhimurium LT2 # 1 384 1 382 385 605 92.0 1e-173 MTKNARFSLLPSFIIISAALLAGCNDQGETQAHPAEPQVTVHVVEKAPLAVTTELPGRTT AFRIAEVRPQVSGIVLKRNFTEGSDVEAGQSLYQIDPATYQADYDSAKGELAKSEAAAAI AHLTVKRYVPLVGTKYISQQEYDQAIADARQADATVIAAKASVESARINLAYTKVTSPIS GRIGKSNVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSIEQGSLHKDNAS STVELVMENGQSYPLKGSLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGV QPNAILVPQQGVTRTPRGDATVMIVNDKSQVEARAVVAAQAVGDKWLISEGLKPGDKVIV SGLQKARPGVQVKATADTETPATKAQ >gi|283548474|gb|GG730303.1| GENE 8 11007 - 11669 261 220 aa, chain + ## HITS:1 COG:STM3389 KEGG:ns NR:ns ## COG: STM3389 COG1309 # Protein_GI_number: 16766684 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 219 1 219 220 358 79.0 4e-99 MARKTKADALKTRQHLMETAIVQFAARGVSNTTLNDIADAANVTRGALYWHFENKTQLFN ELWLQQPPLRDLIQDKLIGRWGDNPLQRLREKFVVGLQYIAENPRQQALMQILYHKCEFH NDMISEQAIRDKIGLSHQTIRDSLQRCVDENLIATSLDLDVIIIILHGSFSGIIKNWLMN PESYDLYGQAPALVDNVLKMLSPDGCVMQLMQSENQVGEF >gi|283548474|gb|GG730303.1| GENE 9 11710 - 11874 142 54 aa, chain - ## HITS:1 COG:no KEGG:CKO_04675 NR:ns ## KEGG: CKO_04675 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 54 8 61 61 90 92.0 2e-17 MIRKYWWLVVFAVFVFLFDALLIQWIELMTTEHDKCRNMNSVNPLKLVNCADLD >gi|283548474|gb|GG730303.1| GENE 10 11957 - 12841 856 294 aa, chain - ## HITS:1 COG:STM3386 KEGG:ns NR:ns ## COG: STM3386 COG0863 # Protein_GI_number: 16766681 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Salmonella typhimurium LT2 # 1 283 1 283 294 511 85.0 1e-145 MHARCEPVYFGDESKKIILGDALTELKKLPSESVDLIFADPPYNIGKDFDGMVERWNEET FLAWLFECIDECHRILKPHGTMYIMNSTENMPYIDLKCRQIFTIKSRIVWSYDSSGVQAK NYFGSMYEPILMMVKDQKNYTFNRDDVLVEAKTGAKRALIDYRKNPPQPYNQKKVPGNVW DFPRVRYLMDEYENHPTQKPKALLERIILASSNPDDKVLDPFAGSFTTGATAVELGRQFV GIEINAEYVKMGLRRLSIGSHFSEVELAKVKKRKTKNLSKKSRLTANSGDLSAK >gi|283548474|gb|GG730303.1| GENE 11 12930 - 13226 323 98 aa, chain - ## HITS:1 COG:ECs4133 KEGG:ns NR:ns ## COG: ECs4133 COG2901 # Protein_GI_number: 15833387 # Func_class: K Transcription; L Replication, recombination and repair # Function: Factor for inversion stimulation Fis, transcriptional activator # Organism: Escherichia coli O157:H7 # 1 98 1 98 98 162 100.0 1e-40 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN >gi|283548474|gb|GG730303.1| GENE 12 13252 - 14217 1114 321 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631300|ref|ZP_00156838.1| COG0042: tRNA-dihydrouridine synthase [Haemophilus influenzae R2866] # 1 317 28 344 353 433 65 1e-120 MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVH VDEPGVRTVQIAGSDPVEMADAARINVKSGAQIIDINMGCPAKKVNRKLAGSALLQYPDL VKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGD AEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHY LDTGELLPPLPLAEVKRLLCAHVRELHDFYGQAKGYRIARKHVSWYLQEHAPDDQFRRTF NAIEDSSEQLAALEAYFENFA >gi|283548474|gb|GG730303.1| GENE 13 14516 - 15292 334 258 aa, chain - ## HITS:1 COG:BH0360 KEGG:ns NR:ns ## COG: BH0360 COG3338 # Protein_GI_number: 15612923 # Func_class: P Inorganic ion transport and metabolism # Function: Carbonic anhydrase # Organism: Bacillus halodurans # 25 248 50 271 275 176 39.0 5e-44 MRFTRFTTTLLAACLMPLTTLAAPWGYTGENGPAQWGEISKEYATCQTGIHQSPIDIQTA TTNKLGLPALNMQYVDSPTRFWSIDHTLRATMSSYSANALEVDEKIYYLKQLDFHAPAEH TLNGKTYPLELQLVHKNHHGDIAIVAVMFDVGEPNQAIQNLWESFPAMKDSSMPIFSPVD INQLLPDNKTYWLYSGSLTTPPCTEGVSWVVLKKPVVLSAEQLDKFRYIVGPANNRPTQP LNQRKITDSNSGDTEILY >gi|283548474|gb|GG730303.1| GENE 14 15421 - 16302 1541 293 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228579759|ref|YP_002848103.1| ribosomal protein L11 methyltransferase [Citrobacter sp. 30_2] # 1 293 1 293 293 598 99 1e-169 MPWIQLKLNTTGANAEELSDALMEAGSVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLF DAETDMKEVVAILEQHPLLGEGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRD VPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGKTVIDFGCGSGILAIAALKLG AAKAIGVDIDPQAIQASRDNAQRNGVSERLELYLPKDQPEAMKADVVVANILAGPLRELA PLISVLPVEGGLLGLSGILASQAESVCEAYADLFTLDPVIEKEEWCRITGQKK >gi|283548474|gb|GG730303.1| GENE 15 16314 - 17765 1553 483 aa, chain - ## HITS:1 COG:ECs4130 KEGG:ns NR:ns ## COG: ECs4130 COG4145 # Protein_GI_number: 15833384 # Func_class: H Coenzyme transport and metabolism # Function: Na+/panthothenate symporter # Organism: Escherichia coli O157:H7 # 1 483 3 485 485 763 93.0 0 MQLEVILPLVAYLLVVFGLSVYAMRKRSTGTFLNEYFLGSRSMGGVVLAMTLTATYISAS SFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILARRYNAVTLNDMLFARYQS RLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYETGLLIFGVSIALYTAFGGFRA SVLNDTMQGMVMLIGTIVLLVGVVHAAGGLSNAVVTLQTIDPKLVSPQGADDILSPTFMT SFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFGMHLAGALGRAVLPD LTVPDLVIPTLMVKVLPPVAAGIFLAAPMAAIMSTINAQLLQSSATIIKDLYLNLRPEQL RNETRLKRMSAAITLLLGALLLLAAWKPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWERA NAAGALSAMIAGGVLYAVLATFNIQYLGFHPIVPALLISLLAFLIGNRFGSAVPQVAILT TDK >gi|283548474|gb|GG730303.1| GENE 16 17755 - 17997 308 80 aa, chain - ## HITS:1 COG:STM3381 KEGG:ns NR:ns ## COG: STM3381 COG3924 # Protein_GI_number: 16766676 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 80 1 80 80 126 90.0 9e-30 MDARFVQAHKEARWALWLTLLYLAAWLVAAYLPDSTLGFTGLPHWFEMACLLTPLVFIVL CWAMVKFIYRDIPLEDDDAA >gi|283548474|gb|GG730303.1| GENE 17 18105 - 19451 1431 448 aa, chain - ## HITS:1 COG:STM3380 KEGG:ns NR:ns ## COG: STM3380 COG0439 # Protein_GI_number: 16766675 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Salmonella typhimurium LT2 # 1 448 2 449 449 872 98.0 0 MDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIT AMKKAGVPTVPGSDGPLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQS ISMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVE EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTE MITGVDLIKEQLRIAAGQPLSIKQDEVMVKGHAVECRINAEDPNTFLPSPGKITRFHAPG GFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQ IRIMNDEHFQHGGTNIHYLEKKLGLQEK >gi|283548474|gb|GG730303.1| GENE 18 19465 - 19935 488 156 aa, chain - ## HITS:1 COG:ECs4127 KEGG:ns NR:ns ## COG: ECs4127 COG0511 # Protein_GI_number: 15833381 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Escherichia coli O157:H7 # 1 156 1 156 156 231 92.0 5e-61 MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPMMQQAYAAPVMQQPALSN AVAQTASPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAFIEIGQKVNAGDTLCIVEA MKMMNQIEADKSGVVKAILVESGQPVEFDEPLVVIE >gi|283548474|gb|GG730303.1| GENE 19 20327 - 20926 370 199 aa, chain - ## HITS:1 COG:STM3378 KEGG:ns NR:ns ## COG: STM3378 COG2717 # Protein_GI_number: 16766673 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 199 1 199 199 291 88.0 7e-79 MRLTAKHITGLKVCLHLAGFLPFIWLFWAVNNGGLSADPVKDIQHFTGRTALKFLLATLL VSPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGIHNLALLGRELISRPYLTL GIVSWVILFALTLTSTLSAQRKLGKYWQFLHNFVYLVAILAPIHYLWSVKIISPQPIIYA ALAAVLLACRYKKFRQWWR >gi|283548474|gb|GG730303.1| GENE 20 20927 - 21931 748 334 aa, chain - ## HITS:1 COG:ECs2709 KEGG:ns NR:ns ## COG: ECs2709 COG2041 # Protein_GI_number: 15831963 # Func_class: R General function prediction only # Function: Sulfite oxidase and related enzymes # Organism: Escherichia coli O157:H7 # 1 334 1 334 334 615 90.0 1e-176 MKKLRPLTEADVTAESAFFMQRRQVLKALGISAAALSLPHSAQADLLSWFKGNDRPPAPA GKPLNFSKPTAWQNSLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKITGEV AKPLTLDHDALTTRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLAQVEPTSNAKYVAFE TLYAPDDMPGQKDRFIGGGLKYPYVEGLRLDEAMHPLTLLTVGVYGKALPPQNGAPIRLT VPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPNEYGFYANVNPHVDHPRWSQASERFIGA GGILDVQRQPTLLFNGYADEVASLYRGLNLQENF >gi|283548474|gb|GG730303.1| GENE 21 22050 - 23024 1029 324 aa, chain - ## HITS:1 COG:STM3376 KEGG:ns NR:ns ## COG: STM3376 COG0604 # Protein_GI_number: 16766671 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 324 1 324 324 601 94.0 1e-172 MQALILEQQDGKTLASVQPLDENQLPEGNVTVDVHWSSLNYKDALAITGKGKIIRNFPMI PGIDFAGTVRASEDPRFHVGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPQGLDGRK AMVIGTAGFTAMLCVMALEDAGIRPQDGEIVVTGASGGVGSTAVALLHKLGYQVAAVSGR ESTHDYLKSLGANRILGRDEFAESRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAAC GLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQAATEITL AEAPKFADAIINNQVQGRTLVKVK >gi|283548474|gb|GG730303.1| GENE 22 23250 - 25190 1353 646 aa, chain + ## HITS:1 COG:ECs4124_3 KEGG:ns NR:ns ## COG: ECs4124_3 COG2200 # Protein_GI_number: 15833378 # Func_class: T Signal transduction mechanisms # Function: FOG: EAL domain # Organism: Escherichia coli O157:H7 # 395 646 1 252 252 451 89.0 1e-126 MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKFTTRVQAVATAIDTHLVSRDFVS LTPQIDDLMVSVDIVRIELLQGEHVVYDHSRTSSYRPAGTNNLYRNITVPLVKHPGMSVR LVYQDPMGNYFHSLLTTAPLTVAIAFIILMLFLSVRWLQRQLSGQELLEIRSTRILNGER GPNVRGTVYEWPARTSSALDMLLTEIQNAREQRSRLDTLIRSYVAQDTKTGLSNRLFFDN QLATLLEDQEKVGSHGVVMMVRLPDFTLLRDSWGITLAEEQISTLINLLSTFMTRYPGAL LARYHRSDFAILLPHRTLKEAESIAGQLLKAVDALPANKMIDRADMVHIGICVCRSGQST EQVMDHAEAATRNSVLQGGNSWSVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV TREGRVHHRELMCRIFDGSEEVISAEYMPMVLQFGLAEEYDRLQLSRLILLLGYWPQERL AMQITVESLIRPRFQRWLRDTLMQCEKSLRKRIIIELAEADVCQHISRLQPVIRLMDALG VRIAVTQAGLTLVSTSWIKELNVELLKLHPSLVRNIDKRTENQLLVQSLAEACSGTPTQV YATGVRSRSEWHTLTERGVAGGQGDFFAASQPLDTNVKKYSQRYSV >gi|283548474|gb|GG730303.1| GENE 23 25497 - 26540 1189 347 aa, chain + ## HITS:1 COG:ECs4123 KEGG:ns NR:ns ## COG: ECs4123 COG1077 # Protein_GI_number: 15833377 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Escherichia coli O157:H7 # 1 347 21 367 367 649 100.0 0 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALL RNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE >gi|283548474|gb|GG730303.1| GENE 24 26605 - 27603 957 332 aa, chain + ## HITS:1 COG:STM3373 KEGG:ns NR:ns ## COG: STM3373 COG1792 # Protein_GI_number: 16766668 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Salmonella typhimurium LT2 # 1 331 1 350 350 523 90.0 1e-148 MKPIFSRGPSLQIRLILAVLVALGVIIADSRLGTFSQIRTYMDTAVSPFYFISNGPRELL DGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENARLRELLGSPLRQDEQKMV TQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKLTSRVLLICDATHA LPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGDVLVTSGLGGRFPEGYPVAVVSS VKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNGANPMTPEEVHRVANERLMQMMPQV LPAPMPAPATGVTPAPADTTSPQPAPRKPGGQ >gi|283548474|gb|GG730303.1| GENE 25 27604 - 28092 364 162 aa, chain + ## HITS:1 COG:STM3372 KEGG:ns NR:ns ## COG: STM3372 COG2891 # Protein_GI_number: 16766667 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Salmonella typhimurium LT2 # 1 162 2 163 163 226 93.0 1e-59 MASIRHQGRWVIWLSFLIALLLQVMPWPDDILVFRPNWVLLILLYWILALPHRVNVGTGF VVGAILDLISGSTLGVRALSMSIIAYLVALKFQLFRNLALWQQALVVVLLSLVVDIIVFW AEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKIRQQFAVQ >gi|283548474|gb|GG730303.1| GENE 26 28199 - 28792 512 197 aa, chain + ## HITS:1 COG:yhdE KEGG:ns NR:ns ## COG: yhdE COG0424 # Protein_GI_number: 16131136 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Escherichia coli K12 # 1 197 1 197 197 326 86.0 2e-89 MTSLYLASGSPRRQALLTQLGVSFERIVTGIEEKRGEGESAQQYVSRLAREKAQAGVTLV QRDLPVLGADTIVILNGEVLEKPLDAAHAAAMLRKLSGKTHQVMTAVALADRQHTLDCLV VTEVTFRALTDEDIAGYIASGEPMDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYE LLTNFNALREQRDKHDG >gi|283548474|gb|GG730303.1| GENE 27 28782 - 30251 1519 489 aa, chain + ## HITS:1 COG:STM3370 KEGG:ns NR:ns ## COG: STM3370 COG1530 # Protein_GI_number: 16766665 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Salmonella typhimurium LT2 # 1 489 1 489 489 910 98.0 0 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT TDITLPSRYLVFMPGASHVGVSQRIESETERERLKKVVAEYCDEQGGFIIRTAAEGVCEE DLASDAAYLKRVWTKVMERKKRPQTRYQMYGELALAQRVLRDFADAQLDRIRVDSRLTYE ALLEFTAEYIPEMTSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV LHSLEQALSKDRVKTSINGFSQLGLVEMTRKRTRESVEHVLCNECPTCHGRGTVKTVETV CYEIMREIVRVHHAYDSDRFLVYASPAVAETLKGEESHALAEVEIFVGKQVKVQIEPLYN QEQFDVVMM >gi|283548474|gb|GG730303.1| GENE 28 30361 - 34161 3427 1266 aa, chain + ## HITS:1 COG:STM3369 KEGG:ns NR:ns ## COG: STM3369 COG3164 # Protein_GI_number: 16766664 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 1266 1 1266 1266 2178 84.0 0 MRRLPGILLLTGAAFVVIAALLVSGLRLALPHLDSWRPAILGKIESATGLPVSASQLSAN WRNFGPTLEARDIHAQLKDGGEFSVKRVTLALDVWQSLLHMRWQFRDLTFWQLQLRTNTP IQSSENGDGIEAGHLSDLFLRQFDHFDLRDSQISFLTLSGQRAELAIPQLTWLNGKNRHR AEGEVSLSSLTGQHGVMQVRMDLRDDNGLLNNGRVWLQADDIDVKPWLGKWMQDNVALQT ARFSLEAWMTINKGVVSGGDVWLKKGGASWLGDNRTHTLSVDNLTAHISREQPGWQFSIP DTRITMDDKPWPSGALTLAWIPEQEVGGENNKRSDELRIRASNLELAGLEGLRPMAAKLS PALGDIWRATQPSGKIDVLALDIPLQATEKTRFQSSWTNLAWKQWKLLPGAEHFSGTLAG SVENGALTASMQQAKMPYETVFRAPLEIENGVATLSWLKNDKGFQLDGRNIDVKAKAVRA RGGFRYLQPTGDEPWLGILAGISTDDGSQAWRYFPENLMGKELVDYLSGAIQGGEADNAT LVYGGNPHLFPYLHNEGQFQVLVPLRNAKFAFQPDWPALTDLNIELNFINDGLWMKTDSV NLGGVKATNLTANIPDYAKEKLLIDADINGPGKAVGPYFDETPLKDSLGATLEQLQIDGD VNARLHLDIPLDGSLVTAKGDVNLRNNSLFIKPLDSTLKNLTGKFSFVNGDLKSEPMTAN WFNQPLNVDFSTTEGAKAYQVAVNLQGDWQPARMGILPAQVNEALNGSMAWNGKVGINLP YHAGATYDIELKSELKNVSSHLPAPLNKRAGEALPVNVKANGNLRSFDLTGNAGSKNHFN SRWLLNQKLTLDRAIWTSESRTVPALPDRQGIELNLPPMDGAQWLALFQKGAADNVGSNA NFPQRVTVRTPSLSLGGQQWNNLSIVSEPTSNGSSVQAQGREINATLAMRDNAPWLASVK YLYYNPNTAKPSQTAASTSPFSDVGRVSFRGWPDVQLRCAECWMWGQKYGRIDADVAIKG DTLTLSNGLLDTGFARLTADGEWVNTPGKERTSLKGKLNGNKIDSAAGFFGVSTPIRNSS FNVDYDLHWRNPPWAPDEASLNGILRTRLGKGELTELSTGHAGQLLRLLSFDALLRKLRF DFSDTFSEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRELDMEAVVA PEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDKPQINEVLRQP RKESQQ >gi|283548474|gb|GG730303.1| GENE 29 34325 - 35770 1727 481 aa, chain + ## HITS:1 COG:tldD KEGG:ns NR:ns ## COG: tldD COG0312 # Protein_GI_number: 16131134 # Func_class: R General function prediction only # Function: Predicted Zn-dependent proteases and their inactivated homologs # Organism: Escherichia coli K12 # 1 481 1 481 481 857 96.0 0 MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSY NIDQGVGVRAISGEKTGFAYADQISLLALEQSAHAARTIVRDSGDGKVKTLGAVEHQALY TSVDPLQSMSREEKLDILRRVDSVARAADKRVQEVTASLTGVYELILVAATDGTLAADVR PLVRLSVSVQVEEDGKRERGASGGGGRFGYDYFLGDLDGDVRADAWAKEAVRMALVNLSA VAAPAGTLPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGHMGELVASELCTVVDDG TMADRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGVAPTGNGRRESYAHLPM PRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTK PVKGATLIGSGIEAMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGT A >gi|283548474|gb|GG730303.1| GENE 30 35869 - 36801 1055 310 aa, chain - ## HITS:1 COG:STM3367 KEGG:ns NR:ns ## COG: STM3367 COG0583 # Protein_GI_number: 16766662 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 595 94.0 1e-170 MERLKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTE AGKIYYQGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPG LTVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEK PADLSNHSWLEYSVRPDNEFELIAPEGISTRLIPEGRFVTNDPMTLVRWLAAGAGIAYVP LMWVINEINRGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYLTDYFVDVAQLFQ GMYGRGKEKG >gi|283548474|gb|GG730303.1| GENE 31 36986 - 37189 229 67 aa, chain + ## HITS:1 COG:no KEGG:G2583_3962 NR:ns ## KEGG: G2583_3962 # Name: aaeX # Def: hypothetical protein # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 67 24 90 90 102 98.0 6e-21 MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFY LITRLFV >gi|283548474|gb|GG730303.1| GENE 32 37233 - 38129 1021 298 aa, chain + ## HITS:1 COG:STM3365 KEGG:ns NR:ns ## COG: STM3365 COG1566 # Protein_GI_number: 16766660 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Salmonella typhimurium LT2 # 1 298 13 310 310 531 93.0 1e-151 MTLVLVILAFIAIFRAWVFYTESPWTRDARFSADVVAIAPDVAGLITNVNIHDNQLVKKD QVLFTIDQPRYKKALEQAEADVSYYQVLAQEKRQEAGRRNRLGVQSMSREEIDQSNNVLQ TVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYSGEFITRGSTAVALVKQHSFY VLAYMEETKLEGVRPGYRAEITPLGSNNVLKGTVDSVAAGVTNASSTRDAKGMATIDSNL EWVRLAQRVPVRIRLDEQQGTLWPAGTTATVVITGKQDRDASQESFFRKMAHRLREFG >gi|283548474|gb|GG730303.1| GENE 33 38135 - 40102 1827 655 aa, chain + ## HITS:1 COG:STM3364 KEGG:ns NR:ns ## COG: STM3364 COG1289 # Protein_GI_number: 16766659 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 655 1 655 655 1185 93.0 0 MGIFSIANQHIRFAVKLACAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYS GAIRYRGMLRIVGTFIGCIAALIIIISMIRAPLLMILVCCVWAGFCTWISSLVKIENSYA WGLSGYTALIIVITIQAEPLLTPQFALERCSEIVMGIVCAIVADLLFSPRSVKQEIDVEL DSLLVAQYQLMQLCIKHGDSEEVDKAWGDLVRRTAALEGMRSNLNMESSRWGRANRRLKA LNTLSLTLITQSCETYLIQNTRPELITDTFRELFDTSVETVQDVHKQLKLMRRVIVWTGE RETPVTIYSWAGAATRYLLLKRGVVSNTKISATEEEILQGEPVVKVESAERHHAMVNFWR TTLSCVLGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFIYGTLAALPLGAL YFLVIIPNTQQSMLLLCLSLAVLGFFLGIEVQKRRLGSMGALASTINIIVLDNPMTFHFS QFLDSALGQIVGCVLAFLVILLVRDNSRDRTGRVLLNQFVSAAVSAMTTNVVRRKENHLP ALYQQLFLLMNKFPGDLAKFRLALTMIIAHQRLRDAPIPVNEDLSAFHRQLRRTADHVIS AGNDDKRRRYFSQLLEELEIYQEKLIVWQAPLQVTEPVKRLSGMLHKYQHALTSN >gi|283548474|gb|GG730303.1| GENE 34 40220 - 40498 253 92 aa, chain + ## HITS:1 COG:STM3363 KEGG:ns NR:ns ## COG: STM3363 COG2732 # Protein_GI_number: 16766658 # Func_class: K Transcription # Function: Barstar, RNAse (barnase) inhibitor # Organism: Salmonella typhimurium LT2 # 1 90 1 90 90 138 80.0 2e-33 MNIYTFDFDEIEDQGDFYREFTRTFDLAREKVVDLDSLWEVVTGEVLPLPLEIEFVHLPD KLRRRYGALILLFDEAEEELEGQLRFNVRHST >gi|283548474|gb|GG730303.1| GENE 35 40555 - 40821 315 88 aa, chain - ## HITS:1 COG:no KEGG:SG3252 NR:ns ## KEGG: SG3252 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Gallinarum # Pathway: not_defined # 1 88 1 88 88 109 72.0 3e-23 MKIKTTIATLSLLSVLSFGASAAVTQVNSQEAQNLQSMGSISVSQIGSSPMDMRQAIAAK AEKAGASSYRVTELREGAHWHATAELYK >gi|283548474|gb|GG730303.1| GENE 36 41196 - 41666 621 156 aa, chain - ## HITS:1 COG:STM3360 KEGG:ns NR:ns ## COG: STM3360 COG1438 # Protein_GI_number: 16766655 # Func_class: K Transcription # Function: Arginine repressor # Organism: Salmonella typhimurium LT2 # 1 156 1 156 156 287 96.0 6e-78 MRSSAKQEELVKAFKALLKEEKFSSQGEIVLALQDQGFDNINQSKVSRMLTKFGAVRTRN AKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEG ILGTIAGDDTIFTTPAKGFTVKDLYEAILELFEQEL >gi|283548474|gb|GG730303.1| GENE 37 42103 - 43038 1219 311 aa, chain + ## HITS:1 COG:ECs4109 KEGG:ns NR:ns ## COG: ECs4109 COG0039 # Protein_GI_number: 15833363 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Escherichia coli O157:H7 # 1 310 1 310 312 541 97.0 1e-154 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGDVEVPVIGGHSGV TILPLLSQIPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVR ALSGEKGVVECAYVEGDGQHARFFSQPLLLGKNGVEERQSIGTLSAFEQAALEGMLDTLK KDITLGEEFVK >gi|283548474|gb|GG730303.1| GENE 38 43167 - 44234 1013 355 aa, chain - ## HITS:1 COG:STM3349 KEGG:ns NR:ns ## COG: STM3349 COG0265 # Protein_GI_number: 16766644 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Salmonella typhimurium LT2 # 1 355 1 356 356 614 94.0 1e-175 MFVKLLRSVAIGLIVGAILLAAMPSLRKINTLTAPQFDSTDETPASYNPAVRRAAPAVVN VYNRSMNSTAHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVG SDTLTDLAVLKINATGGLPTIPINNKRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG LNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQL ATKIMDKLIRDGRVIRGYIGISGREIAPLHAQSGGMDPIQGIVVNEVSPDGPAAQSGIQV NDLIISVNNKPAVSALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPATN >gi|283548474|gb|GG730303.1| GENE 39 44327 - 45694 1329 455 aa, chain - ## HITS:1 COG:STM3348 KEGG:ns NR:ns ## COG: STM3348 COG0265 # Protein_GI_number: 16766643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Salmonella typhimurium LT2 # 1 455 1 455 455 743 92.0 0 MKKQAQLLSALALSVGLTLSAPFPATASIPGQVPGQAALPSLAPMLEKVLPAVVSVRVEG TAAQGQKVPEEFKKFFGDELPDQPSQPFEGLGSGVIIDAAKGYVLTNNHVINQAQKISVQ LNDGREFDTKLIGSDDQSDIALLQIQHPSNLTQIAIADSDKLRVGDFAVAVGNPFGLGQT ATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSI GIGFAIPSNMARTLAQQLMQFGEIKRGLLGIKGTEMTADIAKAFNLDVQRGAFVSEVLPN SGSAKAGVKSGDVITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT STSSSASAEMIAPALQGATLSDGQLKDGSKGIRIDNVEKSSPAAQAGLHKDDVIIAVNRD RVNSIAEMRKVLEAKPSIIALQVVRGNESIYLLLR >gi|283548474|gb|GG730303.1| GENE 40 45863 - 46261 591 132 aa, chain - ## HITS:1 COG:STM3347 KEGG:ns NR:ns ## COG: STM3347 COG3105 # Protein_GI_number: 16766642 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 132 3 134 134 224 94.0 3e-59 MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYREELVSHFARSA ELLDNMADDYRQIYQHMAKSSSSLLPGMSPENNPFRNRLAESEAGNDQAPVQMPRDYSEG ASGLLRSGAKRD >gi|283548474|gb|GG730303.1| GENE 41 46454 - 47581 1035 375 aa, chain + ## HITS:1 COG:ECs4105 KEGG:ns NR:ns ## COG: ECs4105 COG1485 # Protein_GI_number: 15833359 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Escherichia coli O157:H7 # 1 375 1 375 375 673 87.0 0 MQSLTPTSRYQQALKDGTHQPDTVQQEAVNRLETIFQALSTPARPAPQESGLMARLGKLW GKRESPSNAPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKQRLHFHRFMLRVHEELTALQ GQSDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDD LYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLSPLNEETRQQMDKLW LALAGTTGEHAPTLEINHRPMPTLAVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVLL FDVPVMTTLMESEARRFIALVDEFYERHVKLVVSAATPLYEIYQGERLKFEFQRCLSRLQ EMQSEEYLKREHLAG >gi|283548474|gb|GG730303.1| GENE 42 47720 - 47758 51 12 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145320176|gb|ABP62323.1| LSU ribosomal protein L13P [Enterobacter sp. 638] # 1 12 1 12 167 24 75 6e-79 MSCEPQLTKTFG >gi|283548474|gb|GG730303.1| GENE 43 47745 - 47789 50 14 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145320176|gb|ABP62323.1| LSU ribosomal protein L13P [Enterobacter sp. 638] # 1 14 9 22 167 23 71 6e-79 KRLGEHLRVTYLFG >gi|283548474|gb|GG730303.1| GENE 44 47782 - 48225 754 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|226956764|ref|YP_002807559.1| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43] # 1 147 21 167 167 295 97 8e-82 MGKLLMKTFTAKPETVKRDWYVVDATGKTLGRLASELALRLRGKHKAEYTPHVDTGDYII VLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVLEIAVKGMLPKGPLG RAMFRKLKVYAGNEHNHAAQQPQVLDI >gi|283548474|gb|GG730303.1| GENE 45 48241 - 48633 652 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16762104|ref|NP_457721.1| 30S ribosomal protein S9 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 130 1 130 130 255 100 2e-66 MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEK LDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRK ARRRPQFSKR >gi|283548474|gb|GG730303.1| GENE 46 48950 - 49588 656 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133488|ref|ZP_00157281.2| COG0625: Glutathione S-transferase [Haemophilus influenzae R2866] # 1 202 1 202 212 257 62 5e-67 MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVP TLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMQRIEKDWYTLMNVIVNG SASEAEVARKRLREELLAIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPQLGIEFNGAGS KELKGYMTRVFERDSFLASLTEPEREMRLGRG >gi|283548474|gb|GG730303.1| GENE 47 49594 - 50097 474 167 aa, chain + ## HITS:1 COG:STM3341 KEGG:ns NR:ns ## COG: STM3341 COG2969 # Protein_GI_number: 16766636 # Func_class: R General function prediction only # Function: Stringent starvation protein B # Organism: Salmonella typhimurium LT2 # 1 136 1 135 166 231 91.0 4e-61 MDLPQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLQDVQVPMEYARDGQIVLNIAPRAV GNLELANDEVRFNARFGGVPRQVSVPMAAVLAIYARENGAGTMFEPEAAYDEDVASLNDD DNDASGFESETVMSVIDGDKPDNGDDNDPDDTPPPPRGGRPALRVVK >gi|283548474|gb|GG730303.1| GENE 48 50144 - 51511 1582 455 aa, chain - ## HITS:1 COG:dcuD KEGG:ns NR:ns ## COG: dcuD COG3069 # Protein_GI_number: 16131117 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Escherichia coli K12 # 1 455 1 455 455 664 87.0 0 MFGIIISVIVLLTMGYLILKNYKPQVVLAAAGIFLMICGVWLGYGALVADDKSSGYLLVD IYNEILRMLSNRAAGLGLSIMAVGGYARYMDKMGASRAMVSLLSRPLKLIRSPYVVLAAT YVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATSMSIEWGILETNSIF AAQVAGMKIATYFFHYQLPVASCVIIAVAVAHFFVQRRFDQQAVPESNGFAEQKTLEDVP PLYYAILPVMPLILMLGSLLLAHMGLMQAELNLVVVMLMSMTLTMFVEFLHKHDLRKTMD DVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIKGAEHSGLGGIGVMIIMAVV IAACAIVMGSGNAPFMSFASLIPDIAAGLHIPAVVMIMPMHFATTLARAVSPITAVIVVT SGIAGVSPFEVVKRTAIPMAVGFVVNMIVTIALFY >gi|283548474|gb|GG730303.1| GENE 49 51879 - 52661 896 260 aa, chain + ## HITS:1 COG:nanR KEGG:ns NR:ns ## COG: nanR COG2186 # Protein_GI_number: 16131116 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 260 4 263 263 436 90.0 1e-122 MNAFDSQAENSPSTIGRSLRSRPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMA FFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIISELSGMAKDFLSHPGGIAH FEQLRLFFESSLVRYAAEHATDEQIDRLAKALEINSQSLDDNALFIRSDVDFHRVLAEIP GNPIFMAIHVALLDWLIAARPTVPDQELYEHNSVSYQQHIAIVEAIRQRDPEEADRALQE HLNSVSATWHAFSKNKKLRK >gi|283548474|gb|GG730303.1| GENE 50 52922 - 53815 1016 297 aa, chain + ## HITS:1 COG:STM3339 KEGG:ns NR:ns ## COG: STM3339 COG0329 # Protein_GI_number: 16766634 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Salmonella typhimurium LT2 # 1 297 1 297 297 550 90.0 1e-156 MARDLKGVMPALLTPFDNQQRLDVESLRRLVRFNIGQGVDGLYVGGSTGEAFVQNRAERE QVLEIVAEEAKGKVTLIAHVGTVSTEESQQLASAAHRYGFDAVSAVTPFYYPFSFEEHCD HYRAIIDSANGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRRA HPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDVRTAQKLQTECN KVIDLLIKVGVFRGLKTVLHYMDVVSVPLCRKPFAPVDERYLPELKALANQLLAEKA >gi|283548474|gb|GG730303.1| GENE 51 53925 - 55415 1804 496 aa, chain + ## HITS:1 COG:nanT KEGG:ns NR:ns ## COG: nanT COG0477 # Protein_GI_number: 16131114 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 1 496 11 506 506 874 93.0 0 MSTSTQSIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASL ISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIILFSVGTLACGFAPGYTTMFIARLVIGM GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIG ILPIIFALWLRKNIPEAEDWKEKHEGKAPVRTMVDILYRGEHRVINILMTLAAASALWFC FAGNLQNAAIVAVLGLICAFIFISFMVQGSGKRWPTGVMLMVVVLFAFLYSWPIQALLPT YLKTELLYDPSTVAKVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFA IGGANVWVLGLLLFFQQMLGQGISGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPI IGALIAQRLDLGTALGSLSFGLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGRPFSG AVPFGGDKSAMVKSKT >gi|283548474|gb|GG730303.1| GENE 52 55463 - 55708 270 81 aa, chain + ## HITS:1 COG:ECs4096 KEGG:ns NR:ns ## COG: ECs4096 COG3010 # Protein_GI_number: 15833350 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Escherichia coli O157:H7 # 44 81 192 229 229 67 84.0 4e-12 MSLLEQLDKKIAANGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGEAMRHGAWAVTVSS AITRLEHICQWYTAAMKKTVL >gi|283548474|gb|GG730303.1| GENE 53 55705 - 56574 303 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 4 285 6 316 319 121 30 5e-26 MTTLAIDIGGTKLAAALVNSSLQIRERREQPTPASKTPDALRAALQALIAPLQGQAKRVA IASTGIIREGSLLALNPHNLGGLLHFPLAQTLGDLTGLPTLAVNDAQAAAWAEYHALGGE YRDMVFITVSTGVGGGVVSDGKLLTGTGGLAGHLGHTLADPHGPLCGCGRVGCVEAIASG RGIAAAAEGALAGCDAKTIFSRARHGDDQASRLIHRSARTLARLIADVKATNDCQCVVIG GSVGLAEGYLALVDNYLAQEPSAFYVELRAAHYRHDAGLLGAALLAQGD >gi|283548474|gb|GG730303.1| GENE 54 56577 - 57044 425 155 aa, chain + ## HITS:1 COG:yhcH KEGG:ns NR:ns ## COG: yhcH COG2731 # Protein_GI_number: 16131111 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase, beta subunit # Organism: Escherichia coli K12 # 1 153 1 153 154 224 77.0 4e-59 MMSDALRSLPSAGLHPVLQEALTLAVAARPQEKTPGRYALQGDNIFMNVMQFTTQSPAQK KAELHQQYIDIQVLLSGEERILFGGTDSARQCEEMHVEDDYQLCSQIADEQAMILKPGRF AIFMPGEPHKPGCVVGEPMEINKVVIKVRASLLLS >gi|283548474|gb|GG730303.1| GENE 55 57105 - 58385 1338 426 aa, chain - ## HITS:1 COG:STM3334 KEGG:ns NR:ns ## COG: STM3334 COG0402 # Protein_GI_number: 16766629 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Salmonella typhimurium LT2 # 1 426 1 426 426 843 95.0 0 MQNNNITIRQARLQGREGLWQLTIENGRFSRIEPQDAAALPQGEVLDAEGGLAIPPFVEP HIHLDTTQTAGEPSWNQSGTLFEGIERWAERKAMLTHEDVKTRAMQTLKWQIANGIQYVR THVDVSDPTLTALKAMLEVKQEVAPWVELQIVAFPQEGILSYPNGEALLEEAVRLGADVI GAIPHFEFTREYGVESLHKIFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHRDGIGE RVTASHTTAMHSYNGAYASRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGVTRVKE MLEAEISVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCHLMGYGQINDGLNLITTHSAKT LHLQDYGLNVGNSANLVILPAENGFDAVRRQTPARYSIRHGRVIAETVPSQTTLHLAQPE TVTFKR >gi|283548474|gb|GG730303.1| GENE 56 58372 - 59625 1182 417 aa, chain - ## HITS:1 COG:STM3333 KEGG:ns NR:ns ## COG: STM3333 COG1457 # Protein_GI_number: 16766628 # Func_class: F Nucleotide transport and metabolism # Function: Purine-cytosine permease and related proteins # Organism: Salmonella typhimurium LT2 # 1 417 1 417 417 652 95.0 0 MSQDNNYSQGPVPLAARKGVIPLTFVMLGLTFFSASMWTGGTLGTGLSYNDFFLAVLFGN LLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPV GKATGIDVNILIAVSGLLMTLTIFFGISALTILSIIAVPAIVILGSYSVWLAVSDVGGLD HLKTIVPQTPLNFSTALALVVGSFVSAGTLTADFVRFGRNAKGAVLIAMVAFFLGNSLMF IFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANVTGLSSR TLSVANGIIGTLCALWLYNNFVGWLTFLSAAIPPIGGVIIADYLLNHRRYADFSKARFMT VNWIAILSVALGIAAGHYIPGIVPVNAVLGGVFSYILLNPLFNRSLAKSPEVSHAEQ >gi|283548474|gb|GG730303.1| GENE 57 60411 - 60971 605 186 aa, chain + ## HITS:1 COG:STM0195 KEGG:ns NR:ns ## COG: STM0195 COG3539 # Protein_GI_number: 16763585 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 186 1 186 186 188 71.0 6e-48 MKTVVKTAVAAALVMGFASFANAAGTNTGTVTFAGTIEDSPCSIVVGDEHQTVNLGHIGT GSLTNGGQSSAVDFHIGLENCAFTTEATMNTVFSAAGNESIANKGNIALMGANGEMEGSS IVLATYKGAQIKVGDTDVQNLVVDADGKGLADQTLNFKAWVQGDATTTTIDTGEFSSVVN FAISYL >gi|283548474|gb|GG730303.1| GENE 58 61089 - 63752 2921 887 aa, chain + ## HITS:1 COG:STM0196 KEGG:ns NR:ns ## COG: STM0196 COG3188 # Protein_GI_number: 16763586 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 1 885 1 881 885 1297 71.0 0 MSRYSSFRLRALTIFVSLALSGVLNNCYAEDAIQFNTDFLDVKDGAKLDLHRFSRKGYIM PGKYTLQVMVNQSQITQDSVITYAVEENDNNNSFPCLSPELVAQFGLKPELVEKLRWIKS GACLQPNQLEGIETQTDLGKSMLTVIIPQAYLQYSDKDWDPPSRWDDGISGVLFDYNVNS QWQHPEHQAGDQYDVSGNGTLGANIGPWRLRADWQASYRHEDADKSDDDVSQYASAQTDR NWDWSRYYAYRAIPSLGAQLKFGEDALTSDIFDSFNYIGSSLITDDQMLPPNLRGYAPDI SGVARTNAKVTISQQGRVIHESQVPAGPFRIQDLNEAVSGDLHVRIEEQNGQVQEYDVST ASIPYLTRPGQLRYKVAVGRPQDWDHNLQGSLFATGEASWGITNGWSLYGGGIGEEKYQA LAIGVGRDMAALGALSLDLTHSRAEVPEGSEYGDGILHGNSFRASYAKDFDDIDSRLTFA GYRFSQENYMTMDEYLDTQNTESNLIRTGHDKEMYTLTWSQNLADINVNAYVNFTHRTYW NRPAEDSYNLTVSHYFDLGDVRNISLSVNGYRNEYDNETDDGVFISLSVPWGNDRTLSYN GSFSGDDNSHQVGYYERLDDRNNYQLNVGHGNDGAMMDGYYRHTANFADIDASMNYQEGE YVSGGLSLQGGATLTAQGGALHRTGVNGGTRLLVDVDQLADIPVGGYDTPVYTNDFGNAV LTDVNDYYRNQVRIDLTQLPDNAEAINSVAQATLTEGAIGYRHMEVISGEKAMAVIRMFN GEFPPFGAEVRNERQQQVGIVDSDGSVYLAGVNAGERMQVIWDERPQCEIRLPTPLPKDL YSGLLLPCQSDDPSLTSPPAPPVKPLLQQQTRLAPSPEPEALSSRNR >gi|283548474|gb|GG730303.1| GENE 59 63776 - 64519 743 247 aa, chain + ## HITS:1 COG:STM0197 KEGG:ns NR:ns ## COG: STM0197 COG3121 # Protein_GI_number: 16763587 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Salmonella typhimurium LT2 # 19 247 22 250 250 346 72.0 2e-95 MQGHLKLMLISSLAFSACSAQAAVAPDRTRLVFRGDEKSISVDLKNASEKLPYLAQSWVE DDKGQRIASPLAVVPPVQRIEAQGIGQVKIQGMPGLSALPQDRETLFFYNVREIPPKNDK PNTLQIALQTRIKLFYRPASLANVDSMHPWQHQVTLEKKGNQYQVNNATGYYVILSNASN RVDGTTAKGFEPMVIPPRTSPVMQVNAADLGSAPVLTYVNDYGARLPLIFDCSAGKCKVN EEKSRKS >gi|283548474|gb|GG730303.1| GENE 60 64624 - 65040 481 138 aa, chain + ## HITS:1 COG:STM0198 KEGG:ns NR:ns ## COG: STM0198 COG3539 # Protein_GI_number: 16763588 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 138 33 170 170 154 61.0 3e-38 MKLIVLVNAAPPCTITGGTVAFGDVLTTLVDGVNYVQPVSYTLNCSGRVSDYLKLQIQGT SLTVNGESVLKTSATGLGIRIRQAGNKTLVPIGSTQWQNFTYTSTSGIALEAVLVKASGT TLKAQDFSAAATLVVDYQ >gi|283548474|gb|GG730303.1| GENE 61 65037 - 65273 234 78 aa, chain + ## HITS:1 COG:STM0199 KEGG:ns NR:ns ## COG: STM0199 COG3539 # Protein_GI_number: 16763589 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 68 1 69 158 72 49.0 2e-13 MKKLLLGLLLGASTLHAAENLKFTGTLLDPPACVINDDKTIEIDFSKVAIDKIDGSNYMQ TVMFNAVCSQVPKGAGWS >gi|283548474|gb|GG730303.1| GENE 62 65270 - 65509 144 79 aa, chain + ## HITS:1 COG:STM0199 KEGG:ns NR:ns ## COG: STM0199 COG3539 # Protein_GI_number: 16763589 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 79 80 158 158 89 51.0 1e-18 MKITISGTATDFDPAAIETDVDGLGIKLLQNGKSFTIGQTLTINPLAMPLIQAVPVKESG AAPQEGAFEAWATLQLEFQ >gi|283548474|gb|GG730303.1| GENE 63 65524 - 66033 487 169 aa, chain + ## HITS:1 COG:STM0200 KEGG:ns NR:ns ## COG: STM0200 COG3539 # Protein_GI_number: 16763590 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Salmonella typhimurium LT2 # 1 169 8 176 176 158 50.0 5e-39 MAGHALLLWGALSAQGMSANNLHFSGQLISSACTLVITGNNLADVTFPVLNIKDLQKRGQ SVRVPFILQLKDCNTALATGVTVTFSGTEVGDMAGILALDGQSQAEGVGIGIETAEGNPV AINGSSGATFVLKNGQNSLNFNAWVQARDGDEITPGTFSATASVAFEYL >gi|283548474|gb|GG730303.1| GENE 64 66138 - 66902 564 254 aa, chain + ## HITS:1 COG:no KEGG:SEN0206 NR:ns ## KEGG: SEN0206 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Enteritidis # Pathway: not_defined # 2 254 33 279 279 236 48.0 8e-61 MTVYYGIPKSGVARVDYYITVSTPQGVAYGHYHGTTFDGGMKGQKMPLVSWSGTGAAPVL TVKDFDTNVSKSNCPGIGSGWQCASETFTVTVESDNYGCPWVAGLYTLSTNSWYISSSAL SYTGPTVRGTVCPTVPVDTYDVSWDANTLKHEKVLTITPTGGTVSTTLKTYLMESGTLCD KSKMDTRGAGCRVIGTGVTLSILGCDNSVVSTVALAHALTDTELHDITVSVNTKNIGTGT VKSTCNFQYILEQL >gi|283548474|gb|GG730303.1| GENE 65 67342 - 67632 81 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086504|ref|ZP_06571547.1| ## NR: gi|291086504|ref|ZP_06571547.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 96 1 96 96 179 100.0 7e-44 MTNLVEIRRRIFVGWRLTPYPTYNTSNIIKLCTFRSPGKALAATGQFHKIEIRRRILVGW RLTHYPTYNTSNIIKLCTFRSPGKALAAPGNSTRLR >gi|283548474|gb|GG730303.1| GENE 66 67644 - 69062 1885 472 aa, chain - ## HITS:1 COG:STM3331 KEGG:ns NR:ns ## COG: STM3331 COG0493 # Protein_GI_number: 16766626 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 472 1 472 472 947 95.0 0 MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCP VHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIG NIERYINDKAFEMGWRPDLTGVRQTDKRVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE IGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLKDYDAVFLGVG TYQSMRGGLENEDASGVFDALPFLIANTKQLMGFGETAEEPYVSMEGKRVVVLGGGDTAM DCVRTSVRQNASHVICAYRRDEENMPGSKREVKNAREEGVEFQFNVQPLGVEVNANGKVC GVKMARTEMGAPDAKGRRRAEIVAGSEHIVPADAVVMAFGFRPHSMEWLAKHSVELDSQG RVIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGILNYLEV >gi|283548474|gb|GG730303.1| GENE 67 69075 - 73535 5106 1486 aa, chain - ## HITS:1 COG:ECs4091_2 KEGG:ns NR:ns ## COG: ECs4091_2 COG0069 # Protein_GI_number: 15833345 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Escherichia coli O157:H7 # 379 1194 1 816 816 1582 95.0 0 MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQ KPDRFFRIVAQERGWRLAKNYAVGMIFLNKDAELAAASRRIVEEELQQETLSIVGWRDVP TNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLQDDKDFYVCSLS NLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGE INTITGNRQWARARTYKFQTPLIPDLHDAAPFVNETGSDSSSMDNMLELLLAGGMDIIRA MRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWDGPAGIVMSDGRFAACNLDRNGLRPAR YVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGRILHSAETDNDLKSRH PYKEWMEKNVRRLVPFEELADDRVGSRELDDDTLASYQKQFNYSAEELDSVIRVLGENGQ EAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVF CEAEGQAHRLTFKSPILLYSDFTQLTTMKEEHYRADRLDITFDVTETTLEETVKALCDKA EQMVRNGTVLLVLSDRNIAKNRLPVPAPMAVGAVQTRLVEQSLRCDANIIVETASARDPH HFAVLLGFGATAIYPYLAYETLGRLIDTQAIAKDYRTVMLNYRNGINKGLYKIMSKMGIS TIASYRCSKLFEAVGLHDDVVALCFQGVVSRISGAGFTDFQQDLLNLSKHAWLARKPISQ GGLLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQQYAELVNNRPAATLRDLLAITPGD EAVSINEVEPASELFKRFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYG TNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSV PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADL ITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDII KAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYF EFIARETRELMAQLGVKRLVDLIGRTDLLKELDGFTAKQQKLDLGKLLETAEPHPGKALY CTENNPPFDNGVLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGALLSGYIAQTHGDQG LASDPIKAHFSGTAGQSFGVWNAGGVELHLTGDANDYVGKGMAGGLIAIRPPIGSAFLSH KASIIGNTCLYGATGGRLFAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCILGK TGVNFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVDSLAIHEEHLRGLITEHVQLTGS QRGEEILANWPAFSAKFALVKPKSSDVKALLGHRSRSAAELRVQAQ >gi|283548474|gb|GG730303.1| GENE 68 74243 - 75148 982 301 aa, chain + ## HITS:1 COG:STM3329 KEGG:ns NR:ns ## COG: STM3329 COG1242 # Protein_GI_number: 16766624 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Salmonella typhimurium LT2 # 1 299 9 307 309 602 95.0 1e-172 MFGGDLSRRYGQKVHKLTLHGGFSCPNRDGTIGRGGCTFCNVASFADEAQQHHSIAEQLA HQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQQAVSQASIVGLCVGTRPDCVPDAVLD LLCEYKDLGYEVWLELGLQTAHDKTLHRINRGHDFACYQNTTRLARERGLKVCSHLIVGL PGEGLAECLQTMERVVETGVDGIKLHPLHIVKGSTMAKAWEAGRLNGIELDDYTVTAGEM IRHTPPEVIYHRISASARRPTLLAPLWCENRWTGMVELDKYLNEHGVQGSALGTPWVQPE N >gi|283548474|gb|GG730303.1| GENE 69 75315 - 77651 2843 778 aa, chain + ## HITS:1 COG:ZarcB_1 KEGG:ns NR:ns ## COG: ZarcB_1 COG0642 # Protein_GI_number: 15803750 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 EDL933 # 1 562 1 562 562 997 93.0 0 MKQIRMLAQYYVDLMMKLGLVRFSLLLALALVVLAIVVQMAVTMVLHGRVESIDVIRSIF FGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLKLNVQLKDNIAQLNQEIV EREKAEAERQETFEQLKVEINEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGC NRAMELLTGKSEKQLVNLKPADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKA CFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG IVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTS FMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTPQGQVT VRARYDQGNMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLA KNMGGDITVSSQAGKGSIFTLTVHAPAVAEEIEDAFEEDDMPLPALNVLLVEDIELNVIV ARSVLEKLGNSVDVAMTGKAALDMFQPGEYDLVLLDIQLPDMTGLDISRELTQKYAREDL PPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKKYWDTRNKEESTVTSEESSK SQALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYLSVLESNLTARDKKGVVEEGHKIK GAAGSVGLRHLQQLGQQIQSPDLPAWEDNVAEWIEEMKQEWQHDVAVLKAWVASVEKK >gi|283548474|gb|GG730303.1| GENE 70 77881 - 78534 742 217 aa, chain + ## HITS:1 COG:STM3327 KEGG:ns NR:ns ## COG: STM3327 COG3155 # Protein_GI_number: 16766622 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein involved in an early stage of isoprenoid biosynthesis # Organism: Salmonella typhimurium LT2 # 1 217 1 217 217 375 91.0 1e-104 MKKVGVVLSGCGVYDGAEIHETVLTLLAIARNGAQAVCFAPDKQQADVINHLTGEPMPET RNVLIEAARITRGEIRPLAQAVSTELDALIVPGGFGAAKNLSNFASQGSECRVDGDLAAL AVAMHQMGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV DEDNKIVTTPAYMLAQDIAQAASGIDKLVSRVLVLAE >gi|283548474|gb|GG730303.1| GENE 71 78630 - 79250 564 206 aa, chain + ## HITS:1 COG:STM3326 KEGG:ns NR:ns ## COG: STM3326 COG0744 # Protein_GI_number: 16766621 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Salmonella typhimurium LT2 # 1 205 37 241 242 367 90.0 1e-101 MPVPFSAVMVERQLGAWLSGDFGYVAHSDWVSMDAISPWMGLAVIAAEDQKFPDHWGFDV SAIEKALAHNERNENRIRGASTLSQQTAKNLFLWDGRSWVRKGLEAGLTLGMETVWSKKR ILTVYLNIAEFGDGVFGVEAAAQRYFHKPASRLSPSEAALLAAVLPNPLRFKANAPSGYV RSRQAWIMRQMRQLGGESFMRENKLY >gi|283548474|gb|GG730303.1| GENE 72 79317 - 79589 270 90 aa, chain - ## HITS:1 COG:STM3324 KEGG:ns NR:ns ## COG: STM3324 COG1925 # Protein_GI_number: 16766619 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Salmonella typhimurium LT2 # 1 90 1 90 90 148 96.0 3e-36 MTVKQTVEITNKLGMHARPAMKLFELMQGFEAEVLLRNDEGTEAEANSVIALLMLDSAKG RQIEVEATGPQEVEALAAVIALFNSGFDED >gi|283548474|gb|GG730303.1| GENE 73 79586 - 80440 1060 284 aa, chain - ## HITS:1 COG:STM3323 KEGG:ns NR:ns ## COG: STM3323 COG1660 # Protein_GI_number: 16766618 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Salmonella typhimurium LT2 # 1 284 1 284 284 553 98.0 1e-157 MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLADRQISAAVSIDVRNM PESPEIFEQAMNNLPEGFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDKES DLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYV FDVRFLPNPHWDPKLRPMTGLDRPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSY LTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKS >gi|283548474|gb|GG730303.1| GENE 74 80486 - 80977 505 163 aa, chain - ## HITS:1 COG:ptsN KEGG:ns NR:ns ## COG: ptsN COG1762 # Protein_GI_number: 16131094 # Func_class: G Carbohydrate transport and metabolism; T Signal transduction mechanisms # Function: Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) # Organism: Escherichia coli K12 # 1 163 1 163 163 287 94.0 6e-78 MTNNDTTLQLSNVLNQECTRAAVHCQSKKRALEIISELAAKQLSLPSQVVFEAILTREKM GSTGIGNGIAIPHGKLEEDTMRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTH LHTLSLVAKRLADKTICRRLRAAQSDQELYQIITDTEGGQDEA >gi|283548474|gb|GG730303.1| GENE 75 81061 - 81348 483 95 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227335124|ref|ZP_03838780.1| hypothetical protein CIT292_04930 [Citrobacter youngae ATCC 29220] # 1 95 1 95 95 190 100 6e-47 MQLNITGNNVEITEALRDFVNTKFAKLEQYFDRINQVYIVLKVEKVTHISDATLHVNGGE IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH >gi|283548474|gb|GG730303.1| GENE 76 81371 - 82897 1579 508 aa, chain - ## HITS:1 COG:STM3320 KEGG:ns NR:ns ## COG: STM3320 COG1508 # Protein_GI_number: 16766615 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Salmonella typhimurium LT2 # 32 508 1 477 477 833 95.0 0 MSTLSAYTLGKTSDSDRVEDFTSPQEKTTLNMKQGLQLRLSQQLAMTPQLQQAIRLLQLS TLELQQELQQALESNPLLEQTDLHDEIDTQEKQDSEALDTADALEQKEMPEELPLDASWD EIYTAGTPSGTSGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVD ETGYLTVTLDDILESMGDDDVGMDEIEAVLKRVQRFDPVGVAAKDLRDCLLIQLSQFDKS TPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEP EYVIPDVLVRKHNDRWVVELNGDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWL IKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKY LHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQ GIMVARRTVAKYRESLSIPPSNQRKQLV >gi|283548474|gb|GG730303.1| GENE 77 82851 - 83576 291 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 2 235 3 233 305 116 31 1e-24 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAVLQIRDDLTNEQREDRANE LMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII EHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFR L >gi|283548474|gb|GG730303.1| GENE 78 83583 - 84131 733 182 aa, chain - ## HITS:1 COG:STM3318 KEGG:ns NR:ns ## COG: STM3318 COG1934 # Protein_GI_number: 16766613 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 182 1 184 184 303 91.0 1e-82 MKSKTNKLSLNLVLASSLLAASIPAFAVTGDTEQPIHIESDQQSLDMQGNVVTFTGNVVV TQGTIKINADKVVVTRPGGEDGKEVIDGYGNPATFYQMQDNGKPVKGRASQMHYELAKDF VVLTGKAYLEQLDSNITGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNKAPAEKK GN >gi|283548474|gb|GG730303.1| GENE 79 84100 - 84675 448 191 aa, chain - ## HITS:1 COG:STM3317 KEGG:ns NR:ns ## COG: STM3317 COG3117 # Protein_GI_number: 16766612 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 191 1 191 191 331 92.0 6e-91 MSKTRRWVIILLSLAVLVMIGINLADKDETTQVVVNNNEPTYKSEHTDTVVYSPEGALSY HLIAQNVEYYSEQAVSWFTQPVLTTFDKDKVPTWSIKADKAKLTNDRMLYLYGHVEVNAL VPDSQLRRITTDNAQINLVTQDVTSDDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRT SYEIQNKQTQP >gi|283548474|gb|GG730303.1| GENE 80 84672 - 85238 571 188 aa, chain - ## HITS:1 COG:ECs4077 KEGG:ns NR:ns ## COG: ECs4077 COG1778 # Protein_GI_number: 15833331 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Escherichia coli O157:H7 # 1 188 1 188 188 338 94.0 4e-93 MSKAGASLATCYGPVSADVITRAENIRLLLLDVDGVLSDGLIYMGNNGEELKAFNVRDGY GIRCALTSGIEVAIITGRKAKLVEDRCATLGITHLYQGQSDKLVAFNDLLSKLAIAPENV AYVGDDLIDWPVMAQVGLSVAVADAHPLLIPRADYVTRIDGGRGAVREVCDLLLLAQGKL DEAKGQSI >gi|283548474|gb|GG730303.1| GENE 81 85259 - 86245 897 328 aa, chain - ## HITS:1 COG:yrbH_1 KEGG:ns NR:ns ## COG: yrbH_1 COG0794 # Protein_GI_number: 16131087 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Escherichia coli K12 # 1 212 1 212 212 401 95.0 1e-112 MSHLELQPGFDFQQAGKEVLAIEREGLAELDQYINQNFTLACEKIFSCPGKVVVMGMGKS GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVSPQDVVIAISNSGESNEIAALIPVLK RLHVPLICMTGRPESSMARAADVHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLK ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVNKSASLRDALLEITRKNLGMT VICDDAMKIDGIFTDGDLRRVFDMGVDVRQLGIADVMTPGGIRVRPGILAVDALNLMQSR HITSVMVADGDLLLGVLHMHDLLRAGVV >gi|283548474|gb|GG730303.1| GENE 82 86259 - 87236 909 325 aa, chain - ## HITS:1 COG:STM3314 KEGG:ns NR:ns ## COG: STM3314 COG0530 # Protein_GI_number: 16766609 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/Na+ antiporter # Organism: Salmonella typhimurium LT2 # 1 325 1 325 325 456 88.0 1e-128 MLLATALLIIGLLLVVYGADRLVFAASILCRTFGIPPIIIGMTVVSMGTSLPEIIVSVAA SINGQLNLAVGTAIGSNITNILLILGLSALIHPFTVHSDVLRRELPLMLLVSILAASVLY DGQLSRSDGFFLLLLAVLWLLFIVKIARLAERQGNDTLTQEQVAELPREGGLPVAFLWLG IALIIMPMATRMVVDNATVLANYFAMSELTIGLTVVAIGTSLPELATAIAGLRKGENDIA VGNIIGANIFNIVIVLGLPALITPGEVNPMAFTRDYSVMLLVSVIFALLCWRRPRQIGRG AGALLTGGFIIWLAMLYWLSPLLVG >gi|283548474|gb|GG730303.1| GENE 83 87451 - 88263 301 270 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 8 247 1 242 245 120 30 8e-26 MGQSVANLVDMRDVSFSRGDRCIFDNISLTVPRGKVTAIMGPSGIGKTTLLRLIGGQISP DKGEILFDGENVPAMSRSRLFTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTTLPAPL LKSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM GVLVKLISELNSALGVTCVVVSHDVPEVLSIADYAYIMADKKIVAYGSAQALQENADPRV RQFLDGIADGPVPFRYPAGDYHIDLLKTGS >gi|283548474|gb|GG730303.1| GENE 84 88271 - 89053 924 260 aa, chain + ## HITS:1 COG:ECs4073 KEGG:ns NR:ns ## COG: ECs4073 COG0767 # Protein_GI_number: 15833327 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Escherichia coli O157:H7 # 1 260 1 260 260 431 96.0 1e-120 MLLNALASLGHRGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLLIRQLYNVGVLSMLIII VSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEI GLMRATEQLSSLEMMAVDPLRRVISPRFWAGVISLPLLTIIFVAVGIWGGSLVGVSWKGI DAGFFWSAMQNAVDWRLDLVNCLIKSVVFAITVTWIALFNGYDAIPTSAGISRATTRTVV HASLAVLGLDFVLTALMFGN >gi|283548474|gb|GG730303.1| GENE 85 89058 - 89615 680 185 aa, chain + ## HITS:1 COG:STM3311 KEGG:ns NR:ns ## COG: STM3311 COG1463 # Protein_GI_number: 16766606 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, periplasmic component # Organism: Salmonella typhimurium LT2 # 1 185 1 183 183 302 91.0 3e-82 MQTKKNEIWVGLFLLIALLAALFVCLKAANVTSMRTEPTYTIYATFDNIGGLKERSPVRI GGVVVGRVADISLDPKTYLPRVTLEIESRFNHIPDTSSLSIRTSGLLGEQYLALNVGFED PELGTSILKDGGTIQDTKSAMVLEDMIGQFLYNSNGKGDDNKNSGDAPAATEGNNEATTP AGATK >gi|283548474|gb|GG730303.1| GENE 86 89634 - 90269 868 211 aa, chain + ## HITS:1 COG:STM3310 KEGG:ns NR:ns ## COG: STM3310 COG2854 # Protein_GI_number: 16766605 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, auxiliary component # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 392 97.0 1e-109 MFKRLMMVAMLIIAPLSAATAADQTNPYKLMNEAAQKTFDRLKNEQPKIRANPDYLRDVV DQELLPYVQVKYAGALVLGRYYKEATPAQRDAYFAAFREYLKQAYGQALAMYHGQTYQIA PEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQNE WSDLLRTKGIDGLTAQLKSISQQKITLDEKK >gi|283548474|gb|GG730303.1| GENE 87 90269 - 90562 338 97 aa, chain + ## HITS:1 COG:STM3309 KEGG:ns NR:ns ## COG: STM3309 COG3113 # Protein_GI_number: 16766604 # Func_class: R General function prediction only # Function: Predicted NTP binding protein (contains STAS domain) # Organism: Salmonella typhimurium LT2 # 1 97 1 97 98 148 80.0 3e-36 MTQSLTWTREGDKLVLAGELDQDVLNPLWDARVEAMQGVSCIDLNQVSRVDTGGLALLLH LIDQGKQQGNRVSLAGVNDKVYTLAQLYNLPDDVLPR >gi|283548474|gb|GG730303.1| GENE 88 90693 - 90986 291 97 aa, chain + ## HITS:1 COG:STM3308 KEGG:ns NR:ns ## COG: STM3308 COG5007 # Protein_GI_number: 16766603 # Func_class: K Transcription # Function: Predicted transcriptional regulator, BolA superfamily # Organism: Salmonella typhimurium LT2 # 1 97 1 97 97 191 93.0 3e-49 MLGCFHYLTNEEPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGEMFEGMSRVKKQQ SVYGPLMEYIADNRIHALSIKAFTPAEWARDRKLNGF >gi|283548474|gb|GG730303.1| GENE 89 91040 - 92299 1615 419 aa, chain + ## HITS:1 COG:murA KEGG:ns NR:ns ## COG: murA COG0766 # Protein_GI_number: 16131079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Escherichia coli K12 # 1 419 1 419 419 805 98.0 0 MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQL GAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGAR PVDLHITGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTT IIENAAREPEIVDTANFLITLGAKITGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV AAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGDDWISLDMHGKRPKAVNVRTAPHP AFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVETL SGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE >gi|283548474|gb|GG730303.1| GENE 90 92356 - 92640 313 94 aa, chain - ## HITS:1 COG:STM3306 KEGG:ns NR:ns ## COG: STM3306 COG3423 # Protein_GI_number: 16766601 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 94 1 95 95 153 85.0 9e-38 MESKLIDWHPADVIAGLRKKGTSMAAESRKNGLSSSTLANALTRPWPKGELIIARALGTD PWVIWPSRYHDPKTHAFIDRTRMMRGHREKKNAE >gi|283548474|gb|GG730303.1| GENE 91 92862 - 94358 1127 498 aa, chain - ## HITS:1 COG:ispB KEGG:ns NR:ns ## COG: ispB COG0142 # Protein_GI_number: 16131077 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Escherichia coli K12 # 176 498 1 323 323 630 97.0 1e-180 MALLLTVVFTTTKLNDFNFLATTVSNNFSFDNAAINERNADFDFFTVCDHQNFSEFNRFA SCDVQLFQANGLTFAYSVLFTTTLENRVHKKLRFRAHLFDDSECAINIHNRARILRKTRA FDKCYRQYMKKKNTTRTVTFIYGVFSVQSAYIYNPEPDVTFPYSEVIGARSPAFAMNLEK INELTAQDMAGVNATILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYQENA HVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTS LGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGIL AGCSAEQEKGLQDYGRYLGTAFQLIDDLLDYSADGEQLGKNVGDDLNEGKPTLPLLHAMR HGTPEQAQMIRQAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDT PWREALIGLAHIAVQRDR >gi|283548474|gb|GG730303.1| GENE 92 94068 - 94403 561 111 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|224585100|ref|YP_002638899.1| 50S ribosomal protein L21 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] # 1 111 1 111 111 220 97 6e-56 MCAEAEFFMYAVFQSGGKQHRVSEGQTVRLEKLDIATGESVEFAEVLMIANGEEVKIGVP FVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGISA >gi|283548474|gb|GG730303.1| GENE 93 94423 - 94680 437 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227335105|ref|ZP_03838761.1| hypothetical protein CIT292_04912 [Citrobacter youngae ATCC 29220] # 1 85 1 85 85 172 100 1e-41 MAHKKAGGSTRNGRDSEAKRLGVKRFGGETVLAGSIIVRQRGTKFHAGSNVGCGKDHTLF AKADGKVKFEVKGPKNRKFISIVAE >gi|283548474|gb|GG730303.1| GENE 94 94808 - 95773 759 321 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46133178|ref|ZP_00156740.2| COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily [Haemophilus influenzae R2866] # 1 303 1 300 306 296 49 6e-79 MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTVVFYRFLMASIGLGAILAVKKKL PPLRIFRKARWLVLLAIATGGLFGNFILFSSSLQYLSPTASQVIGQLSPVGMMIASVFIL KEKMRGTQVIGAIMLLSGLVLFFNTSLIEIFTRLTDYTWGVIFGVGAAMVWVSYGVAQKV LLRRLASPQILFLLYTLCTIALLPLAKPGVITQLSDWQLACLVFCGLNTLVGYGALAEAM ARWQAAQVSAIITLTPLFTLLFSDLLSLAWPDFFARPMLNLLGYLGAFIVVAGAMYSAIG HRIWGGLRKHETVVSQPRSGE >gi|283548474|gb|GG730303.1| GENE 95 95789 - 96961 1559 390 aa, chain + ## HITS:1 COG:yhbZ KEGG:ns NR:ns ## COG: yhbZ COG0536 # Protein_GI_number: 16131073 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Escherichia coli K12 # 1 390 1 390 390 667 94.0 0 MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWLEADENLNTLIDYR FEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLMVAKG GWHGLGNTRFKSSVNRTPRQKTMGTPGDKRDLMLELMLLADVGMLGMPNAGKSTFIRAVS AAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRV LLHLIDIDPIDGSDPVENARIIIGELEKYSQDLASKPRWLVFNKIDLLDKAEAEEKAKAI ADALGWEGKYYLISAASQLGVKDLCWDVMTFIIENPIVQAEEAKQPEKVEFMWDDYHRQQ LAEVEDEAEDDWDDDWDEDDEEGVEFIYKR >gi|283548474|gb|GG730303.1| GENE 96 97092 - 98525 1137 477 aa, chain - ## HITS:1 COG:ECs4061 KEGG:ns NR:ns ## COG: ECs4061 COG2027 # Protein_GI_number: 15833315 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Escherichia coli O157:H7 # 1 477 1 477 477 909 94.0 0 MRFSRFTIGLTASIAFSVQAANVDEYINQLPAGANLALMVQKVGAPAPAIDFHSQQMALP ASTQKVITALAALIQLGPDFRFTTTLETKGSVEDGVLKGDLVARFGADPTLKRQDIRNMV ATLKKSGVTQIAGNVLIDTSIFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYS AQKPNDLAFIRVASYYPVTMFSQVRTLARGSAEAQYCELDVVPGDLNRFTLTGCLPQRAD PLPLAFAIQDGASYAGAIIKDELKQAGITYSGTLLRQTQVNEPGTVVASKQSAPLHDLLK IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLS RHNLIAPATMMQVLQYIAQHDNELNFITMLPLAGHDGSLQYRAGLHQAGVDGKVSAKTGS LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN >gi|283548474|gb|GG730303.1| GENE 97 98774 - 99250 636 158 aa, chain + ## HITS:1 COG:STM3299 KEGG:ns NR:ns ## COG: STM3299 COG0782 # Protein_GI_number: 16766595 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Salmonella typhimurium LT2 # 1 158 1 158 158 283 96.0 9e-77 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL >gi|283548474|gb|GG730303.1| GENE 98 99404 - 99736 455 110 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|188532496|ref|YP_001906293.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Erwinia tasmaniensis Et1/99] # 14 110 1 97 97 179 93 1e-43 MTRFQSQRKQKYTMNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELI KVKIASEDRDTKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR >gi|283548474|gb|GG730303.1| GENE 99 99650 - 99826 59 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCQTFQVLFLFSTQIHRIFLLTLGLKTGHSTAISHISPNSCVEIYTIGNDELPFGNVK >gi|283548474|gb|GG730303.1| GENE 100 99823 - 100452 404 209 aa, chain + ## HITS:1 COG:ECs4058 KEGG:ns NR:ns ## COG: ECs4058 COG0293 # Protein_GI_number: 15833312 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 23S rRNA methylase # Organism: Escherichia coli O157:H7 # 1 209 1 209 209 394 95.0 1e-110 MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGA APGGWSQYAVTQIGNSGRIIACDLLPMDPIVGVDFLQGDFRDELVLQALLERVGDSKVQV VMSDMAPNMCGTPAVDIPRAMYLVELALGMARDVLAPGGSFVVKVFQGEGFDEYLREIRS LFTKVKVRKPDSSRARSREVYIVATGRKP >gi|283548474|gb|GG730303.1| GENE 101 100543 - 102486 1694 647 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1 636 1 624 636 657 54 0.0 MSDMAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREAKINGREIN VTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWI FFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRF QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLSPDIDAAIIARGTPGFS GADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAG HAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEE IIYGAEHVSTGASNDIKVATNLARNMVTQWGFSDKLGPLLYAEEEGEVFLGRSVAKAKHM SDETARIIDQEVKSLIERNYDRARRLLNDNMDILHSMKDALMKYETIDAPQIDDLMARRE VRPPAGWEEPGSSNNNSGNTGKPSAPRPVDEPRAPDSGTMSEQLGDK >gi|283548474|gb|GG730303.1| GENE 102 102585 - 103433 720 282 aa, chain + ## HITS:1 COG:ECs4056 KEGG:ns NR:ns ## COG: ECs4056 COG0294 # Protein_GI_number: 15833310 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Escherichia coli O157:H7 # 1 282 16 297 297 533 93.0 1e-151 MKLFAQGSSLDLSHPHVMGILNVTPDSFSDGGAHNSLVEAVKHANLMINAGATIIDVGGE STRPGAADVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEVIRECARVGAHIINDIRSL SEPGALEAAAETGLPVCLMHMQGQPKTMQEAPRYEDVFAEVNRYFVEQIARCERAGITKD KLLLDPGFGFGKNLTHNYTLLARLAEFHHFDLPLLVGMSRKSMVGQLLNVGPSERLSGSL ACAVIAAMQGAHIVRVHDVKETVEAMRVVEATLSAKENKRYE >gi|283548474|gb|GG730303.1| GENE 103 103426 - 104763 1630 445 aa, chain + ## HITS:1 COG:mrsA KEGG:ns NR:ns ## COG: mrsA COG1109 # Protein_GI_number: 16131066 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Escherichia coli K12 # 1 444 1 444 445 805 95.0 0 MSNRKYFGTDGIRGRVGDSPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLES ALEAGLAAAGLSASFTGPMPTPAVAYLTRAFRAEAGIVISASHNPYYDNGIKFFSIDGTK LPDAVEEAIEAEMEKAITCVDSAELGKATRIVDAAGRYIEFCKGTFPNELSLSELKIVVD CANGATYHIAPNVLRELGANVIAIGCEPNGVNINEEVGATDVRALQARVIAEKADLGIAL DGDGDRVIMVDHEGNKVDGDQIMYIIAREALRQGQLRGGAVGTLMSNMGLELALKQLGIP FARAKVGDRYVLEKMQEKGWSIGAENSGHVILLDKTTTGDGIVAGLQVLTAMVRNHMSLH DLCSGMKMFPQLLVNVRYTAGSGDPLENENVKAVMAEVEAALGNRGRVLLRKSGTEPLIR VMVEGEDEAQVTEFAHRIADAVKAA >gi|283548474|gb|GG730303.1| GENE 104 104809 - 106275 1396 488 aa, chain - ## HITS:1 COG:PM0933 KEGG:ns NR:ns ## COG: PM0933 COG3069 # Protein_GI_number: 15602798 # Func_class: C Energy production and conversion # Function: C4-dicarboxylate transporter # Organism: Pasteurella multocida # 1 451 2 458 462 296 44.0 7e-80 MSLLLALIAIIFAGRLILKKYHPQSVLLLTGIVLLLIAHFSGMTTLSSLVKKSTGFGPFD AFEFIRDTLSVRLGGLGLQIMLIGGFATYMSAIGASQVLVRVTSRPLQRLNSPYLLLGLA LLLGQFLSLFISSATGLGLLLMATLYPLLTRLGCSRAAVAAVIASTCAVEFGPGSGNSVL AAKTAGIEVVNYFVQDQLPIVVPVILFIALLHIVVQRFFDRRESGDDAAQQMQTLTSTEE AEAPMAWLFLPMLPLVLMLVCSDLVFSSLKITLDTAVLISLAITLVCEYGRHRKAREVMA GVQKVFDSMGSVFATVVTLIIAGEVFSAGLKAIGAVDALLSLSGEFGLSAASIILLMTLI TFAISALMGSGNAAFFSFAPMVPDISRHIGSDIAVMMLPIQISAGIGRTLSPIAGVIIAI AGIAGVSPVEIVKRTAIPMLGGWLLMIALTFARSGHLLAILPWLAVLVLLMVGGYFWQRR RKQPLAVQ >gi|283548474|gb|GG730303.1| GENE 105 106286 - 107419 995 377 aa, chain - ## HITS:1 COG:no KEGG:ROD_20981 NR:ns ## KEGG: ROD_20981 # Name: not_defined # Def: putative isoaspartyl dipeptidase # Organism: C.rodentium # Pathway: not_defined # 1 377 1 377 377 671 90.0 0 MFTLLTNARVFSPEDLGLCSLLIHADRIVAVEKDISLFDGVNEVIDCRGKWVIPGIIDQH VHLTGGGGEAGFASRTPAVKLRDLIQAGITTVVGVLGTDAISRSPKDLYAKMQSLNLEGL RAFMHTGAYAVPSPTITRSIRDDMAFIPAILGVKIALADHRGSYPSFQELLRIISDIRVA SLLAGKKGLLHVHLGNLPEGMSQLIELCDAGIPIHHISPTHVARTEPLFEQAIAFAHRGG HIDVTSGGSRFTPQEQAIRHALEAKVPADRITVSSDGNGSVPRFNAQGIVEGLSAAPVAG NLNLLPRLIDVGIPVPQAIAMLTANVARSLGISGGVLCAGERADICVLNDDLTLSHLFAA GKPLLRDGECLVTGNFE >gi|283548474|gb|GG730303.1| GENE 106 107568 - 108461 692 297 aa, chain + ## HITS:1 COG:AGc4564 KEGG:ns NR:ns ## COG: AGc4564 COG0583 # Protein_GI_number: 15889777 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 294 9 304 306 136 30.0 5e-32 MDCKWLEDFLALSQHGNYSQAAAQRHITQPALSRRIKALEEVLGVPLFDRTTTPVTLTRY GERFEPYARNVLSTLTEARHELSAMTPATDNTLVMVSLHTLSVNILPDMINYLRQSEPQL NFTVNASIQGIDNHFNALIDRQIDLLVTYDLPSAQPGLEIAGGLKRSLWRYERFIPVISA QLADTLDDPQALIPWLCYSDYTFVRRIIEPAEQRVRPRLKKVFESGLSETIREMVLRHMG MAWLPESMVAEELVNQQVIHCWPENADLICEIPVVVWANLDDQRAVMQRCWEKLLRF >gi|283548474|gb|GG730303.1| GENE 107 108629 - 108961 322 110 aa, chain + ## HITS:1 COG:STM3293 KEGG:ns NR:ns ## COG: STM3293 COG1314 # Protein_GI_number: 16766589 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Salmonella typhimurium LT2 # 1 109 1 109 110 181 96.0 2e-46 MHEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASGTLFGSSGSGNFMTRMTAVLG TLFFIISLVLGNMNSNKTNKGSEWENLSAPAKTEQTQPAAPAQPTSDIPH >gi|283548474|gb|GG730303.1| GENE 108 109252 - 110595 1676 447 aa, chain - ## HITS:1 COG:STM3290 KEGG:ns NR:ns ## COG: STM3290 COG0137 # Protein_GI_number: 16766587 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Salmonella typhimurium LT2 # 1 447 23 469 469 905 98.0 0 MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRA MEYGAENARLVDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG FDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL HIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEV TLELRRGNDYSILNTVSDNLTYKPERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLF GYAKAGLLTASSTTGLPQVENLENKAK >gi|283548474|gb|GG730303.1| GENE 109 111244 - 111666 401 140 aa, chain + ## HITS:1 COG:ECs4051 KEGG:ns NR:ns ## COG: ECs4051 COG0779 # Protein_GI_number: 15833305 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 140 13 152 152 269 97.0 1e-72 MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITV AYNLEVSSPGLDRPLFTAEHYVRFLGEEVTLVLRMAVQNRRKWQGVIKAVDGEMITVTVE GKDEVFALSNIQKANLVPHF >gi|283548474|gb|GG730303.1| GENE 110 111688 - 113196 1039 502 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 1 489 4 483 537 404 43 1e-111 AAMNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDT FRRWVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKV REAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENF RPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSR AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV ASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAH AAIDTFTKYLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNA LTTLALAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAEQGIDDLADIEGL TDEKAGELIMAARNICWFGDEA >gi|283548474|gb|GG730303.1| GENE 111 113221 - 115911 3224 896 aa, chain + ## HITS:1 COG:STM3286 KEGG:ns NR:ns ## COG: STM3286 COG0532 # Protein_GI_number: 16766584 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Salmonella typhimurium LT2 # 1 896 1 892 892 1330 96.0 0 MTDVTVKTLAAEIQTSVDRLVQQFADAGIQKSADDSVSAQEKQTLLAHLNRENGSAPDKL TLQRKTRSTLNIPGTGGKSKSVQIEVRKTRTFVKRDPQEAERLAAEEQAQREAEEQARRE AEEAAKREAQQKAEREAAEQAKREAADKAKREAAEKDKVSNQQTDDMTKTAQAEKARREN EAAELKRKAEEEARRKLEEEARRVAEEARRMAEENEKNGVNNAEPVEDTSDYHVTTSQHA RQAEDENDREVEGGRGRTRSAKAARPAKKGNKHAESKADREEARAAVRGGKGGKQRKGSA LQQGFQKPAQAVNRDVVIGETITVGDLANKMAVKGSQVIKAMMKLGAMATINQVIDQETA QLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRST KVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG VMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGIMPEEWGGESQFVHVS AKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKG DIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVA LYRQGKFREVKLARQQKSKLENMFANMTDGEVHEVNIVLKADVQGSVEAISDSLLKLSTD EVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYHL IDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDN VVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIKRTIA >gi|283548474|gb|GG730303.1| GENE 112 116132 - 116536 580 134 aa, chain + ## HITS:1 COG:ECs4048 KEGG:ns NR:ns ## COG: ECs4048 COG0858 # Protein_GI_number: 15833302 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Escherichia coli O157:H7 # 1 134 1 133 133 226 94.0 8e-60 MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQ DEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHD DERRVNPTDDSKED >gi|283548474|gb|GG730303.1| GENE 113 116536 - 117480 959 314 aa, chain + ## HITS:1 COG:STM3284 KEGG:ns NR:ns ## COG: STM3284 COG0130 # Protein_GI_number: 16766582 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Salmonella typhimurium LT2 # 1 314 1 314 314 594 95.0 1e-170 MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLG EATKFSQYLLDSDKRYRVVARLGQRTDTSDADGQIVQERPVTFSAEQLADALETFRGDIE QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGHELELEVHCSKGTYI RTIIDDLGEKLGCGAHVTYLRRLTVSKYPVERMVTLEHLRELVEQAEQQNVPAAQLLDPL LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRMSGAPLEGLVRVTEGDDGKFIGMGEMDDE GRVAPRRLVVEYPA >gi|283548474|gb|GG730303.1| GENE 114 117754 - 118023 445 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16762048|ref|NP_457665.1| 30S ribosomal protein S15 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 89 1 89 89 176 100 2e-42 MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV SQRRKLLDYLKRKDVARYTALIERLGLRR >gi|283548474|gb|GG730303.1| GENE 115 118269 - 120401 184 710 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16] # 595 691 151 258 384 75 45 3e-12 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVND ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTR DAQSLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPDLDK FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEPEAPASQGE >gi|283548474|gb|GG730303.1| GENE 116 120511 - 121395 535 294 aa, chain + ## HITS:1 COG:ECs4044 KEGG:ns NR:ns ## COG: ECs4044 COG4785 # Protein_GI_number: 15833298 # Func_class: R General function prediction only # Function: Lipoprotein NlpI, contains TPR repeats # Organism: Escherichia coli O157:H7 # 1 294 1 294 294 550 97.0 1e-156 MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK QAKEALKQRFEKSDKEQWGWNIVEFYLGNISESTLMERLKADATDNTSLAEHLSETNFYL GKYYLSLGDLDNATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ >gi|283548474|gb|GG730303.1| GENE 117 121575 - 123500 2355 641 aa, chain + ## HITS:1 COG:STM3280 KEGG:ns NR:ns ## COG: STM3280 COG0513 # Protein_GI_number: 16766578 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 1 641 18 646 646 1028 95.0 0 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEELD METLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD VLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERREGGRGEGRGFGGERREGG RGDGRRFSGERREGGRGPRRDDSSAPRRDDSTGRRRFGGDA >gi|283548474|gb|GG730303.1| GENE 118 123646 - 124890 1707 414 aa, chain + ## HITS:1 COG:STM3279 KEGG:ns NR:ns ## COG: STM3279 COG0814 # Protein_GI_number: 16766577 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 414 1 414 414 679 95.0 0 MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGL MILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFSE MSLNVPARAAGLGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATL FNVAQSNASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLLALVLY TVWLLGTMGNIPRPEFIGIAQQGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLG VTLGLFDYLADLFGFDDSAMGRFKTALLTFVPPIVGGLLWPNGFLYAIGYAGLAATIWAA IVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSVNLLPVYQ >gi|283548474|gb|GG730303.1| GENE 119 124978 - 125985 1132 335 aa, chain - ## HITS:1 COG:STM3276 KEGG:ns NR:ns ## COG: STM3276 COG2141 # Protein_GI_number: 16766574 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 335 1 335 335 636 94.0 0 MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLALARLAEKRGYHRYWLAEHHNMTGIASAAT SVLIGYLAANTSTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPT MRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQIPVWLLGSSLYSAQLA AQLGLPFAFASHFAPDMLHQALHLYRSQFTPSARLAKPYTMVCINIIAADSNRDAEFLFT SMQQAFVKLRRGETGQLPPPVENMHQQWSASEQYGVQQALSMSLVGDKAKVRHGLEAILR ETQADEIMVNGQIFDHQARLHSFDLAMQVKEELVG >gi|283548474|gb|GG730303.1| GENE 120 126173 - 127051 902 292 aa, chain - ## HITS:1 COG:STM3275 KEGG:ns NR:ns ## COG: STM3275 COG0826 # Protein_GI_number: 16766573 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Salmonella typhimurium LT2 # 1 292 7 298 298 575 94.0 1e-164 MKYSLGPVLWYWPKETLEDFYQQAAASQADVIYLGEAVCSKRRATKVGDWIDMAKSLTGS GKQVVLSTLALVQASSELGELKRYVENGDFLLEASDLGVVNMCAERKLPFVAGHALNCYN AVTLRLLLKQGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARC FTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGL VNIVRLSPSGTETFAMLDAFRANENGTAPLPLAAHSDCNGYWKRLAGLELQS >gi|283548474|gb|GG730303.1| GENE 121 127060 - 128055 990 331 aa, chain - ## HITS:1 COG:ECs4039 KEGG:ns NR:ns ## COG: ECs4039 COG0826 # Protein_GI_number: 15833293 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 # 1 331 1 331 331 660 97.0 0 MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA TNEEAINFYHRNFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSS YLTGESPNTVGACSPARFVRWQQTQQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG ERYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCIADPQ NYAPQAAWMETLGSMSEGTQTTLGAYHRKWQ >gi|283548474|gb|GG730303.1| GENE 122 128276 - 128800 599 174 aa, chain + ## HITS:1 COG:STM3273 KEGG:ns NR:ns ## COG: STM3273 COG3154 # Protein_GI_number: 16766571 # Func_class: I Lipid transport and metabolism # Function: Putative lipid carrier protein # Organism: Salmonella typhimurium LT2 # 1 174 1 174 174 310 94.0 1e-84 MLDKLRSRLVHFGPSLMSVPVKLTPFALKRQVLEQVLSWQFSQALADGELEFLEGRWLSI HVRDIGLQWYTSVENDKLIVSQSADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEG DTELGLYVKNLMDAIELEQMPKALRVMLMQLADFVEAGMKASPDTKQTSVGEPC >gi|283548474|gb|GG730303.1| GENE 123 128794 - 129297 514 167 aa, chain + ## HITS:1 COG:ECs4037 KEGG:ns NR:ns ## COG: ECs4037 COG3153 # Protein_GI_number: 15833291 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Escherichia coli O157:H7 # 1 167 1 167 167 323 97.0 1e-88 MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFS PVDVQGEDLQWVGMAPLAVDENYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRF GFELAAHHDLRCRWPGTESAFQVHRLADDALEGVSGLVEYHDHFNRF >gi|283548474|gb|GG730303.1| GENE 124 129284 - 129583 241 99 aa, chain - ## HITS:1 COG:STM3271 KEGG:ns NR:ns ## COG: STM3271 COG2827 # Protein_GI_number: 16766569 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Salmonella typhimurium LT2 # 1 99 6 105 105 156 90.0 7e-39 MTPWYLYLIRTADNALYTGITTDVQRRYKQHQSGKGAKALRGKGELTLAFAAQVGDRSLA LRIEYRVKQLTKRQKERLVEGEGLEALLSSLQTPDVKND >gi|283548474|gb|GG730303.1| GENE 125 129636 - 130079 377 147 aa, chain + ## HITS:1 COG:ECs4035 KEGG:ns NR:ns ## COG: ECs4035 COG3787 # Protein_GI_number: 15833289 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 145 1 145 147 270 89.0 5e-73 METLTAVTRWLAKQHVVTWCVHHDGELWCANAFYLFDAQKVVFYVLTEEKTRHAQMSGPR APVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDVARKAYNRRFPVARMLSAPVWEIRP DEIKFTDNTLGFGKKMLWLRDSRPENT >gi|283548474|gb|GG730303.1| GENE 126 130059 - 130577 363 172 aa, chain - ## HITS:1 COG:ECs4034 KEGG:ns NR:ns ## COG: ECs4034 COG0693 # Protein_GI_number: 15833288 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Escherichia coli O157:H7 # 1 172 15 186 186 309 91.0 2e-84 MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKQAGKTVKGKKGEASVTIDKAIED VRPADFDALLLPGGHSPDYLRGDDRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRK LTAVKPIIIDVKNAGAEFYDQEMVNDNDRLITSRTPDDLPAFNREALRILGA >gi|283548474|gb|GG730303.1| GENE 127 130706 - 131341 535 211 aa, chain + ## HITS:1 COG:ECs4033 KEGG:ns NR:ns ## COG: ECs4033 COG0702 # Protein_GI_number: 15833287 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 1 211 16 226 226 368 84.0 1e-102 MSQVLITGATGLVGGNLLRMLLNEPRINAITAPTRRPLADTVGVYNPHDPQLTDALAQVT DPVDIVFCCLGTTRREAGTKEAFVHADYTLVVDTALTGRRLGAQHMLVVSSMGANANSPF FYNRVKGEMEQALIAQKWPRLTIVRPSMLLGERDKQRTNERFLAPLFRLLPGNWKSIEAR DVARAMLLEALSPEHEGVSILTSSELRERAK >gi|283548474|gb|GG730303.1| GENE 128 131419 - 131994 578 191 aa, chain - ## HITS:1 COG:STM3267 KEGG:ns NR:ns ## COG: STM3267 COG2823 # Protein_GI_number: 16766565 # Func_class: R General function prediction only # Function: Predicted periplasmic or secreted lipoprotein # Organism: Salmonella typhimurium LT2 # 1 191 1 191 191 280 93.0 9e-76 MKAFSPLAVIIAALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLELRVNTALSK DAQIKKEARINVSAYQGKVLLVGQSPNSELSARAKQIAMGVDGTTEVFNEIRQGQPIGLG DASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLGLVTDREAKAAADIASRVSGV KRVTTAFTFIK >gi|283548474|gb|GG730303.1| GENE 129 132004 - 132594 351 196 aa, chain - ## HITS:1 COG:STM3266 KEGG:ns NR:ns ## COG: STM3266 COG0279 # Protein_GI_number: 16766564 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoheptose isomerase # Organism: Salmonella typhimurium LT2 # 1 196 1 196 196 368 98.0 1e-102 MLDRIKVCFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFA ASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHHSARVQEMHMLTVN CLCDLIDNTLFPHQDD >gi|283548474|gb|GG730303.1| GENE 130 132629 - 133024 151 131 aa, chain - ## HITS:1 COG:STM3265 KEGG:ns NR:ns ## COG: STM3265 COG0792 # Protein_GI_number: 16766563 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Salmonella typhimurium LT2 # 1 131 1 131 131 210 87.0 4e-55 MAQIPARTDRPRQLTSKQAGDAWEAAARDWLESKGLHFIAANVRERGGEIDLIMREGNTT VFVEVRYRRSARFGGAAASVTWSKQHKLLQTARLWLARHNGSFDTVDCRFDVLAFTGNEV EWFKDAFNDRS >gi|283548474|gb|GG730303.1| GENE 131 132982 - 135033 2196 683 aa, chain - ## HITS:1 COG:STM3264 KEGG:ns NR:ns ## COG: STM3264 COG3107 # Protein_GI_number: 16766562 # Func_class: R General function prediction only # Function: Putative lipoprotein # Organism: Salmonella typhimurium LT2 # 1 683 1 680 680 1023 85.0 0 MVPSTFSRLKAARALPVILAALIFAGCGTQAPDQSAAHMQGTAQADSGFYLQQMQQSSDD SKTNWQLLAIRALLKEGKSQQAIELFNQLPQKLNDAQRREQSLLAVEIKLAQKDVAGAQA LLDKLTPADFDQNQQARYWQAQIDVNQGRPSLTLLRALIAQEPLLAANAKQKNMDATWQA LSSMTQEQAQALVINADENVLQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPQNPGAKL LPTQLVNVQSFKPASTSKIALLLPLNGQAAVFGRTIQQGFEAAKNQGTQPVAAPVAATPA AVTTAATATEQPQTTDGVASPSQASVSDLTHETPAQPEAAAPQPAAPAQPTTASAPANPS AELKIYDTSSQPLNQILTQVQQDGASIVVGPLLKNNVEELMKSNTPLNVLALNQPESAKN LPNVCYFALSPEDEARDAARHIRDQGKQTPLLLIPRSSLGDRVANAFAQEWQKLGGGVVL QQKFGSTAELKMGVNGGSGISLTGSPVVSSAPTQPGVTIGGLTIPAAPTDAQITGGSGRV DAVYILATPEEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPM LAGANEPLMQQALGAVRNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGALTAN QDCVINRKLSWLKYQQGQIVPAS >gi|283548474|gb|GG730303.1| GENE 132 135098 - 135961 997 287 aa, chain + ## HITS:1 COG:ECs4027 KEGG:ns NR:ns ## COG: ECs4027 COG0313 # Protein_GI_number: 15833281 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Escherichia coli O157:H7 # 1 286 1 286 286 518 95.0 1e-147 MKQHESADNSQGQLFIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINA RLFALHDHNEQQKAETLVAKLKEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLP GPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDAMKAIEAEPRTLIFYESTHRLLDSLE DMVAVWGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQED DLPADALRTLALLQTELPLKKAAALAAEIHGVKKNALYKYALDQQGE >gi|283548474|gb|GG730303.1| GENE 133 136103 - 136822 473 239 aa, chain - ## HITS:1 COG:agaI KEGG:ns NR:ns ## COG: agaI COG0363 # Protein_GI_number: 16131033 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Escherichia coli K12 # 1 232 19 250 251 327 63.0 1e-89 MQSTQYCDNYDVLSDRASEQLITLIQNKPDATICLATGGTPLLTYRYFVEKINQRKIDIE RVVFVKLDEWVGIPLNSPATCESFLQQHIAQPLGLRAEQLVGFQSENVNAQECERITEII ASRGGLDLCLLGIGKNGHLGLNEPAEILEPFCHISILDEKTRHHDMLKTAANRVTHGITL GLKDILNAKEILLLIAGEGKHDAVEKYLAATLTTAVPASFLWLHRNVSCLIDGSQYPDR >gi|283548474|gb|GG730303.1| GENE 134 136875 - 137666 684 263 aa, chain - ## HITS:1 COG:ECs4019 KEGG:ns NR:ns ## COG: ECs4019 COG3716 # Protein_GI_number: 15833273 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1 263 1 263 263 486 96.0 1e-137 MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPVLKKIYKDDKAGLSAAMKDH LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG ICSSFASQGNILGPILFFAVYLMIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL GITVIGGLIASYVHINVVTSFAIDSTHSVALQQDFFDKVFPNILPMGYTLLMYYLLRVKK AHPVLLIGVTFVLSIISSALGIL >gi|283548474|gb|GG730303.1| GENE 135 137656 - 138462 548 268 aa, chain - ## HITS:1 COG:agaC KEGG:ns NR:ns ## COG: agaC COG3715 # Protein_GI_number: 16131031 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli K12 # 1 268 1 267 267 453 92.0 1e-127 MHEITLIQGLSLAALVFFLGIDFWLEALFLFRPIIVCTLTGAILGDIHIGLITGGLTELA FAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSL FMAKADNCAKEANTSAFTRLNWLTTLIVASSYAVIAFLCTYLAQGAMQSLVKAMPAWLTH GFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVNNLLPVAVLGAGFAVYEF FNAKAKQQAQPQPAANKNNEEEDYSNGI >gi|283548474|gb|GG730303.1| GENE 136 138516 - 138992 280 158 aa, chain - ## HITS:1 COG:ECs4018 KEGG:ns NR:ns ## COG: ECs4018 COG3444 # Protein_GI_number: 15833272 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 # 1 158 1 158 158 260 89.0 7e-70 MSSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDDVAQDEIQQKLMGITAETYGFG IRFFSIDKTINVIGKAAPHQKIFLICRTPQTVRRLLEGGIKLNDVNVGNMHFSEGKKQIS SKVYVNGQDLDDLQFIKKQGVNIFIQDVPGDQKEQIPD >gi|283548474|gb|GG730303.1| GENE 137 139181 - 140056 827 291 aa, chain - ## HITS:1 COG:ECs4017 KEGG:ns NR:ns ## COG: ECs4017 COG0191 # Protein_GI_number: 15833271 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 1 284 1 284 286 536 92.0 1e-152 MSIISTKYLLQDAQKKGYAVPAFNIHNAETIQAILEVCYEMQSPVILAGTPGTFKHIALE EIYALCSAYSTSYGMPLALHLDHHESLDDIRRKVDAGVRSAMIDGSHFPFEENVKLVKSV VDFCHAKDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVERTGVDSLAVAIGTAH GLYTKTPKIDFQRLGEIREVVDIPLVLHGASDVPDNYVRRTIELGICKVNVATELKIAFA DAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRSKIAVCGSANRLMPARELS >gi|283548474|gb|GG730303.1| GENE 138 140069 - 141223 978 384 aa, chain - ## HITS:1 COG:agaS KEGG:ns NR:ns ## COG: agaS COG2222 # Protein_GI_number: 16131028 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted phosphosugar isomerases # Organism: Escherichia coli K12 # 1 384 1 384 384 686 86.0 0 MPETYTPAHASTGTWTEEEIRQQPASWIRSLANIDNIRSAIDSFLAPLLRKNDLRIVLTG AGTSAFIGDIIAPWLASQTGKNISAVPTTDLVTNPMDYLNPAHPLLLVSFARSGNSPESV AAVELANQFVPECYHLPITCNEAGSLYQNAVESDNAFALLMPAETHDRGFAMTSSITTMM ASCLAVFAPQKINSQTFRDVADRCQTILTSLGDFSDGVFGNAPWKRIVYLGSGGLQGAAR ESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDSETLVVVFISSHPYTRQYDLDLLAELR RDRQALRVVAIAAQTDDVIEAGPHILLPPARTFIDVELAFCFLMYAQVFALTQSISIGNT PDTPSASGTVNRVVQGVVIHPWNA >gi|283548474|gb|GG730303.1| GENE 139 141385 - 141618 92 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRTKDVIILLIYKESLADSAEQNFIKRKKKKGLAIGDRRPIRVKMKGLKGESLTLNPDLL HMQAAIESDNVGTFAHR >gi|283548474|gb|GG730303.1| GENE 140 141526 - 142659 766 377 aa, chain - ## HITS:1 COG:Z4489 KEGG:ns NR:ns ## COG: Z4489 COG1820 # Protein_GI_number: 15803675 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Escherichia coli O157:H7 EDL933 # 1 373 1 373 377 625 83.0 1e-179 MTQVLRAKRLLTEQGWLDDHQVRIEDGIITAIEPIVSGIMVRDAELLCPAYIDTHVHGGA GVDVMDDAPDTLDKLAMHKAREGVASWLPTTVTAPLPDIHRVLKRIARHYYSGGPGAQVL GSYLEGPYFTPQNKGAHPPELFRELDLSELDELIAISQQTLRVVALAPEKTGALQTIKHL KQRNVRVMLGHSAATWEQTRAAFDAGADGLVHCYNGMTGLHHREPGMVGAGLTDPRAWLE LIADGHHVHPAAMKLCCCCAKDRLVLITDAMQAAGMPDGRYTLCGEEVEMRSGIVRTASG GLAGSTLSVDAAVRNMVEFTGITAEEAIRMASLHPARLLGIDRQRGSLAVGKCADIIALN SGLHMQQIWIQGQALPL >gi|283548474|gb|GG730303.1| GENE 141 142656 - 143090 477 144 aa, chain - ## HITS:1 COG:ECs4014 KEGG:ns NR:ns ## COG: ECs4014 COG2893 # Protein_GI_number: 15833268 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose-specific component IIA # Organism: Escherichia coli O157:H7 # 1 144 1 144 144 214 84.0 5e-56 MLGIILTGHGGFASGMEKAMKQILGEQTQFIAIDFPETSTTALLTSQLEQAVSELDAQQD IVFLTDLLGGTPFRVASTLAMQRQGTEVIAGTNLQLLLEMVLERDDLSSEAFRLQALECG HRGLTSLVDELGRCREEKTVEEGI >gi|283548474|gb|GG730303.1| GENE 142 143107 - 143985 988 292 aa, chain - ## HITS:1 COG:ECs4013 KEGG:ns NR:ns ## COG: ECs4013 COG3716 # Protein_GI_number: 15833267 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID # Organism: Escherichia coli O157:H7 # 1 292 1 292 292 546 96.0 1e-155 MASNQTALPNVSGTEETLLSGTNENVYEDQNIGAELTKKDINRVAWRSMLLQASFNYERM QASGWLYGLLPALKKIHTNKRDLARSMKGHMGFFNTHPFLVTFVIGIILAMERSKQDVNS IQSTKIAVGAPLGGIGDAMFWLTLLPICGGIGASLALQGSILGAVVFIVMFNVVHLGLRF GLAHYAYRMGVAAIPLIKANTKKVGHAASIVGMTVIGALVATYVRLSTTLEITAGDAVVK LQTDVIDKLMPAFLPLVYTLTMFWLVRRGWSPLRLIAITVVLGVVGKFCHFL >gi|283548474|gb|GG730303.1| GENE 143 143975 - 144754 768 259 aa, chain - ## HITS:1 COG:ECs4012 KEGG:ns NR:ns ## COG: ECs4012 COG3715 # Protein_GI_number: 15833266 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC # Organism: Escherichia coli O157:H7 # 1 259 1 259 259 407 95.0 1e-114 MEISLLQAFALGILAFIAGLDMFNGLTHMHRPVVLGPLVGLILGDLHTGILTGGTLELVW MGLAPLAGAQPPNVIIGTIVGTTFAITTGVKPEVAVGVAVPFAVAVQMGITFLFSVMSGV MARCDRMAANADTDGIERVNYLALLALGAFYFLCAFLPIYFGAEHAKTAIDVLPTRLIDG LGVAGGIMPAIGFAVLLKIMMKNVYIPYFILGFVAAAWLKLPVLAIAAAALAMALIDFLR KSPEPTAPAAQKEEFEDGI >gi|283548474|gb|GG730303.1| GENE 144 144765 - 145238 521 157 aa, chain - ## HITS:1 COG:ZagaV KEGG:ns NR:ns ## COG: ZagaV COG3444 # Protein_GI_number: 15803671 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB # Organism: Escherichia coli O157:H7 EDL933 # 1 157 13 169 169 291 93.0 5e-79 MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRF WSLQKVIDNIHRAADRQKILLVCKSPADFFRLVEGGVPVNRINVGNMHYANGKQQIAKTV SVDAADIAAFNGLKAAGVECFVQGVPTEPAQDLYKLL >gi|283548474|gb|GG730303.1| GENE 145 145258 - 146535 1026 425 aa, chain - ## HITS:1 COG:agaZ KEGG:ns NR:ns ## COG: agaZ COG4573 # Protein_GI_number: 16131024 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted tagatose 6-phosphate kinase # Organism: Escherichia coli K12 # 1 419 7 425 426 748 87.0 0 MVEQHKRGKANGIYAVCSAHPVVLEAAIRYAHANHTPLLIEATSNQVDQFGGYTGMTPAD FRRFVCGLADSLNFSQDMLILGGDHLGPNRWQNLPAEQAMANADDLIKNYVAAGFKKIHL DCSMSCANDPVPLTDEIVAERAARLAKVAEETCVAHFGESDLVYVIGTEVPVPGGAHEAL TELAVTTPDAARATLQAHYHAFEKRGLEDIWPRIIALVVQPGVEFDHTHIIDYQPQKAVS LSKMVEDYDTLIFEAHSTDYQTPQSLRQLVKDHFAILKVGPALTFALREALFSLAAIEEE LLPAKASSGLRHVLESVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDEA FERLVRNLADEPIPLPLISQYLPLQYVKVREGDLSATPRELIINHIQDILQQYHCASLGD SSHNA >gi|283548474|gb|GG730303.1| GENE 146 146803 - 147612 807 269 aa, chain + ## HITS:1 COG:ECs4009 KEGG:ns NR:ns ## COG: ECs4009 COG1349 # Protein_GI_number: 15833263 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Escherichia coli O157:H7 # 1 267 1 267 269 452 90.0 1e-127 MSNTESSADKRVIGTSERREQIIQRLRQQGSVQVNDLSLFFGVSTVTIRNDLAFLEKQGI AVRAYGGALICDSNTPGVEPSVEDKSSLNTAVKRSIARAAAELIKPGHRVILDSGTTTYE IARLMRQHTNVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHF DMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSTKFNRSSLHKIIDTQRI DMIIVDEDIPEESLEGLRKHGIEVVLVSI >gi|283548474|gb|GG730303.1| GENE 147 147673 - 149244 1604 523 aa, chain - ## HITS:1 COG:ECs4006 KEGG:ns NR:ns ## COG: ECs4006 COG2721 # Protein_GI_number: 15833260 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli O157:H7 # 1 523 1 523 523 1007 94.0 0 MADIEIRQESPTAFYIKVHATDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALCDI PVHGEIVRYGEVIGYAVRDIPRGSWIDESMVELPKAPPLETLPLATKVPEPLPPLEGYTF EGYRNADGSVGTKNLLGISTSVHCVAGVVDYMVKIIERDLLPKYPNVDGVVGLNHLYGCG VAINAPAAIVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLEGTHDVKSIPVDSASI VSLQDEKHVGFQSMVADILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTAN PAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGK TDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDF VCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEE TIEDVGLKLFEFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT >gi|283548474|gb|GG730303.1| GENE 148 149649 - 150983 1637 444 aa, chain + ## HITS:1 COG:ECs4005 KEGG:ns NR:ns ## COG: ECs4005 COG0477 # Protein_GI_number: 15833259 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 444 1 444 444 788 93.0 0 MILDTVIEKKKGTHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAISMGYIFS AFGWAYLLMQIPGGWLLDKFGSKKVYTWSLFFWSLFTFLQGFVDMFPLAWAGISMFIMRF MLGFSEAPSFPANARIVAAWFPTKERGTASAIFNAAQYFSLALFLPLLGWLTFAWGWAHV FTVMGAIGFVLTGLWVKFIHNPTDHPHMSPEELKFISENGAVVDMDHKKPGDKKSGGPKL HYIKQLLTNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGF AGGVLGGVCSDYLIKRGSSITLARKLPIVLGMLLASTIILCNYTDNTTLVVALMALAFFG KGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALMFVG CSALMAMVCYLFIVGDIKRMELQK >gi|283548474|gb|GG730303.1| GENE 149 150999 - 151769 890 256 aa, chain + ## HITS:1 COG:ECs4004 KEGG:ns NR:ns ## COG: ECs4004 COG3836 # Protein_GI_number: 15833258 # Func_class: G Carbohydrate transport and metabolism # Function: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase # Organism: Escherichia coli O157:H7 # 1 256 1 256 256 479 94.0 1e-135 MNNMIFPNKFKAALAAQQIQIGCWSALASPISTEVLGLAGFDWLVLDGEHAPNDISTFIP QLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETEEEAVNAVASTRYPPEGI RGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQQGVDNVDAIAATEGVDGIFVGPSDL AAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILAPVEADARRYLEWGATFVAVGSDL GVFRSATQKLADSFKK >gi|283548474|gb|GG730303.1| GENE 150 151800 - 152690 1480 296 aa, chain + ## HITS:1 COG:ECs4003 KEGG:ns NR:ns ## COG: ECs4003 COG2084 # Protein_GI_number: 15833257 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases # Organism: Escherichia coli O157:H7 # 1 296 4 299 299 500 96.0 1e-141 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPESIADVIAAGAETAATAKDIAEQCD VIITMLPNSPHVKEVALGEGGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGVDMLDA PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLLKAMAGSVVHTGEIGAGNVTKLANQVIVA LNIAAMSEALTLATKAGVSPELVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK DLANALDTSHGVGAQLPLTAAVMEMMQALRAEGLGNADHSALACYYEKLAKVEVTR >gi|283548474|gb|GG730303.1| GENE 151 152794 - 153939 1121 381 aa, chain + ## HITS:1 COG:STM3247 KEGG:ns NR:ns ## COG: STM3247 COG1929 # Protein_GI_number: 16766545 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Salmonella typhimurium LT2 # 1 381 1 381 381 602 89.0 1e-172 MKIVIAPDSYKESLSATEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGSE HSAWVTGPLGEKVNACWGMSGDGKTAFIEMAAASGLALVPPEKRNPLVTTSRGTGELILQ ALDGGAQSIIIGIGGSATNDGGAGMAQALGAKLCDANGTEIGYGGGSLMSLNSIDISGLD PRLKTCSIRVACDVTNPLTGDTGASRIFGPQKGATEERILELDRNLSHYADIIKKSLRVD VKDVPGAGAAGGMGAALMAFLGAELRSGIEIVTQALNLEEHIHDCTLVVTGEGRIDSQSI HGKVPVGVANVAKKYHKPVIGIAGSLTRDVEVVHHYGIDAVFSVLTTISTLEEAFRGAFD NIYRASRNIAATLAIGMRSAG >gi|283548474|gb|GG730303.1| GENE 152 155295 - 156233 520 312 aa, chain + ## HITS:1 COG:STM3245 KEGG:ns NR:ns ## COG: STM3245 COG0583 # Protein_GI_number: 16766544 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 311 1 311 312 541 88.0 1e-154 MNTISLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDVEAYFGIELVVRKNTG VTLTQAGQVMLSWSESITREMKNMVDEMNSMTSNAVVDVSFGFPSLIAFTIMSGMIKKFK EVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSDEMKLQDLHVEPLFESDFILVASKS RTCTGITSLSALKNEQWVLPQTNMGYYSELLTTLQNNGISSENIVNTDSVVTIYNLVLNA DFLTVIPCDMTTPFGSNQFITIPVQETLPVARYAAVWSKNYRIKKAASILVELAKEYSSY NCRRRRQLIEIG >gi|283548474|gb|GG730303.1| GENE 153 156332 - 157321 899 329 aa, chain + ## HITS:1 COG:ECs3997 KEGG:ns NR:ns ## COG: ECs3997 COG1171 # Protein_GI_number: 15833251 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Escherichia coli O157:H7 # 1 329 1 329 329 565 95.0 1e-161 MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIR GAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY SAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEILEDLYDVDNVI VPIGGGGLIAGIAVAIKSINPTIKIIGVQSENVHGMEASFRAGEITTHRTTGTLADGCDV SRPGTLTYEIVRELVDDIVLVSEDEIRNSMVALIQRNKVVTEGAGALACAALLSGKLDSY IQNRKTVSIISGGNIDLSRVSQITGLVDA >gi|283548474|gb|GG730303.1| GENE 154 157344 - 158675 1553 443 aa, chain + ## HITS:1 COG:STM3243 KEGG:ns NR:ns ## COG: STM3243 COG0814 # Protein_GI_number: 16766542 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 443 1 443 443 788 97.0 0 MSTTDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILIMLVLAY PIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTIT NTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISL SLIPYWNSAVIDQVDISNIALTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYE KDYGREFTEQKCSKIISRASMLMVAVVMFFAFSCLFTLSPANMADAKAQNIPVLSYLANH FASLSGTKSTFATILEYGASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSM GKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG RLDNVFVTVIGLLTILNIVYKLF >gi|283548474|gb|GG730303.1| GENE 155 158707 - 159915 1103 402 aa, chain + ## HITS:1 COG:tdcD KEGG:ns NR:ns ## COG: tdcD COG0282 # Protein_GI_number: 16131008 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Escherichia coli K12 # 1 402 5 406 406 713 88.0 0 MNEFPVVLVINCGSSSIKFSVLDAANCEVLMAGIADGINSENAFIAINGGEPAKLAHHSY EDALKAIAVELEKRNLMDSVALIGHRIAHGGNIFTESAIITEEVIDNIRRVSPLAPLHNY ANLSGIESAQHLFPGVQQVAVFDTSFHQTMAPEAYLYGLPWKYFEELGVRRYGFHGTSHR YVSQRAHELLDLQNDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDV DFGAMAWIAGETNQTLGDLERVVNKESGLLGISGLSSDLRTLEKAWHEGHERAQLAIKTF VHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRRLVIEHLAVLGVSVDSEMNNLPNSH GERIISNKDARVICAVIPTNEEKMIARDAIALGKINTPVAFA >gi|283548474|gb|GG730303.1| GENE 156 159944 - 162238 2928 764 aa, chain + ## HITS:1 COG:STM3241 KEGG:ns NR:ns ## COG: STM3241 COG1882 # Protein_GI_number: 16766540 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Salmonella typhimurium LT2 # 1 764 1 764 764 1518 95.0 0 MKVNIDTSDMLYAEAWNGFKGTDWKEEINVRDFIQHNYTPYEGDESFLAEATPATTALWE KVMAGIRIENSTHAPVDFDTNIATTITAHDAGYIEQELEKIVGLQTDKPLKRALHPFGGI NMIKSSFDAYGREMDANFEYLFTDLRKTHNQGVFDAYSPDMLRCRKSGVLTGLPDGYGRG RIIGDYRRVALYGIRYLVRERELQFADLQSNLEWGQNLEATIRLREELSEHRRALLQMQE MAAKYGCDISRPARNAQEAVQWVYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGI LDEQQAQELIDHFIMKIRMVRFLRTPEFDTLFSGDPIWATEVIGGMGLDGRTLVTKNSFR YLHTLHTMGPAPEPNLTVLWSEQLPIAFKKYAAQVSIITSSLQYENDDLMRADFDSDDYA IACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDEVLDYDTV MESLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGMAGLSVAADS LSAIKYARVKPIRDENGLAIDFEIEGDYPQYGNNDERVDSIACDLVERFMKKIKVLPTYR NAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLP FTYAKDGISYTFSIVPAALGKEDAVRKTNLVGLLDGYFHHEAHVEGGQHLNVNVMNREML MDAIEHPENYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL >gi|283548474|gb|GG730303.1| GENE 157 162252 - 162647 337 131 aa, chain + ## HITS:1 COG:tdcF KEGG:ns NR:ns ## COG: tdcF COG0251 # Protein_GI_number: 16131006 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Escherichia coli K12 # 1 127 22 148 150 204 80.0 3e-53 MRKVIATECAPGAIGPYVQGVDLGSMVLTSGQIPVCPQTGDVAEHVADQARQSLENVKAI VESAGLKVSDIVKTTVFVSDLNDFATINQVYQQFFDEHKAIYPTRSCVQVARLPKDVKLE IEAIAVRGDTL >gi|283548474|gb|GG730303.1| GENE 158 162736 - 164100 1233 454 aa, chain + ## HITS:1 COG:STM3240 KEGG:ns NR:ns ## COG: STM3240 COG1760 # Protein_GI_number: 16766539 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Salmonella typhimurium LT2 # 1 453 1 453 454 805 88.0 0 MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDLLVSSGELPRTTHIVVDLYGSLSLTGKGH ATDVAIMMGLAGNSPQNVNIDSIAGFIQEVARTGRLPVAEGTHVVDFSPDENILFHPETL PRHENGMRITAWHGNETLLSKTYYSIGGGFIVEEEQFGQAHDVETPVPYNFHSASELLKL CERNGLSVSGLMMQNELAMRSKEEIDAGFAAIWDVMHAGIERGMNTEGVLPGPLNVPRRA VALRRLLVSSDNLSSDPMNVIDWINMFALAVSEENAAGCRVVTAPTNGACGIIPAVLAYY DKFRRPVNANSIARYLLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGG SPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMALRRTSEPRVS LDKVIETMYETGKDMNDKYRETSRGGLAIKVVCT >gi|283548474|gb|GG730303.1| GENE 159 164456 - 165787 1606 443 aa, chain + ## HITS:1 COG:STM3239 KEGG:ns NR:ns ## COG: STM3239 COG0814 # Protein_GI_number: 16766538 # Func_class: E Amino acid transport and metabolism # Function: Amino acid permeases # Organism: Salmonella typhimurium LT2 # 1 443 1 443 443 778 97.0 0 METATNSSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQV GLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYF VMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKI STGMVLTKLLVVAALGLSMVGMWHLYNAGSLPPMALLIKNAIITLPFTLTSILFIQTLSP MVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISA LAIAAQFISGDGAGWVKIVSVILNIFAVMTAFFGVYLGFREATQGIVMNVLRRKMPAEKI NETLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYK GASLYLIIITGLLLCVSPFLAFS >gi|283548474|gb|GG730303.1| GENE 160 165812 - 167122 1353 436 aa, chain + ## HITS:1 COG:STM3238 KEGG:ns NR:ns ## COG: STM3238 COG3681 # Protein_GI_number: 16766537 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 436 1 436 436 670 87.0 0 MFETTLNPLWDSFIRAVQEEVKPALGCTEPISLALAAAVASSELDGAVERIDAWVSPNLM KNGLGVTVPGTGMVGLPIAAALGAIGGNAKAGLEVLKDASAEAVAQAKAMLTAGKVAVML QEPCEDILFSRAKVYSAEGWACVTIVGGHTNVVHIETNKGVVFAAEECTQKEDRESPLAV LSHTSLEEIVAFVNAVPFASIRFILDAARLNGALSQEGLRGNWGLHIGTTLEKQCARGLL ANDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQGITATVPVMVVAEHFGADEEKLAR ALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAAGMAWIVDGRYNTIAMAISSMIGDVSG MICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHNVEQSITNLCALACRSM QETDKQIIEIMASKAH >gi|283548474|gb|GG730303.1| GENE 161 167177 - 167350 211 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086528|ref|ZP_06356077.2| ## NR: gi|291086528|ref|ZP_06356077.2| putative cytoplasmic protein [Citrobacter youngae ATCC 29220] putative cytoplasmic protein [Citrobacter youngae ATCC 29220] # 1 57 1 57 57 78 100.0 2e-13 MENNGVRLLSKKKTQKRQPQVEPKKQDTVTFGYEDMLTELEAIVADAELRLEDEEAA >gi|283548474|gb|GG730303.1| GENE 162 167353 - 168054 815 233 aa, chain - ## HITS:1 COG:yhaK KEGG:ns NR:ns ## COG: yhaK COG1741 # Protein_GI_number: 16131001 # Func_class: R General function prediction only # Function: Pirin-related protein # Organism: Escherichia coli K12 # 1 233 1 233 233 412 83.0 1e-115 MITTRTAKQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGASFQPRTYP KVDIVNLILEGEAEYRDSEGNHIQAKAGEVLLLATQPGISYSEHNISKDKPLTRMQLWLD ACPQRENACVQKATLSVGKHQLLASPDGEEGSLHLRQQVWVHHVELQQGESLSFQLHGPR AYLQSIHGRFHAVTAGAEKEALTCGDGAFIRDETNITLVADTPLRALLIDLPV >gi|283548474|gb|GG730303.1| GENE 163 168159 - 169055 867 298 aa, chain + ## HITS:1 COG:ECs3987 KEGG:ns NR:ns ## COG: ECs3987 COG0583 # Protein_GI_number: 15833241 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 298 1 298 298 535 96.0 1e-152 MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTAAFFPLIDRLA GKANTQLSVITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYSLMNVYVAAPDH PIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSSIEDKRQALLAGLG VATMPYPLVEDDIAAGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFAGK >gi|283548474|gb|GG730303.1| GENE 164 169153 - 169536 334 127 aa, chain - ## HITS:1 COG:ECs3985 KEGG:ns NR:ns ## COG: ECs3985 COG3152 # Protein_GI_number: 15833239 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 7 124 1 118 121 195 83.0 2e-50 MQNEAKMDWYLNVLKNYFGFGGRARRKEYWMFVLVNIIFTFVLGILDRMLGWERAGGEGI LTTIYGVLVFIPWWAVQFRRLHDTDRSAWWLLVLLIPIVGWLIIIIFNCQNGTQGSNRFG ADPKQLS >gi|283548474|gb|GG730303.1| GENE 165 169729 - 170715 1194 328 aa, chain - ## HITS:1 COG:STM3233 KEGG:ns NR:ns ## COG: STM3233 COG0435 # Protein_GI_number: 16766532 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted glutathione S-transferase # Organism: Salmonella typhimurium LT2 # 1 328 1 328 328 637 92.0 0 MGQLIDGVWHDTWYDTKSTGGKFQRSASAYRNWLTADGAPGPTGEGGFAAEKDRYHLYVS LACPWAHRTLILRKLKGLEPFISVSVVHPLMLENGWTFDDNFPAATGDTLYQHEFLYQLY LHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPSALQSQID ELNGWIYDNVNNGVYKAGFATSQEAYDDAVEKVFHSLARLEQILGQHRYLTGNQLTEADI RLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSH KTINPTGIISVGPWQDLNEPHGRDERFA >gi|283548474|gb|GG730303.1| GENE 166 170787 - 171179 488 130 aa, chain - ## HITS:1 COG:ECs3983 KEGG:ns NR:ns ## COG: ECs3983 COG2259 # Protein_GI_number: 15833237 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 130 31 160 160 218 96.0 3e-57 MKKLEDVGVLVARILMPILFISAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGL AILFGFLTRTTALFTAGFTLLTAFIFHSNFAEGVNSLMFMKNLTIAGGFLLLAITGPGAF SIDRVLNKKW >gi|283548474|gb|GG730303.1| GENE 167 171352 - 171651 272 99 aa, chain - ## HITS:1 COG:no KEGG:CKO_04502 NR:ns ## KEGG: CKO_04502 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 99 1 99 99 119 77.0 3e-26 MSSKVERQQRKARLLGQIQQQRLDLSATRRDWLEATEVYDRGWKTLLNLRGWVLVGSSIM AVRTIRNPNRLVRWAKRGFSVWSIWRLVKATIRQQQLRG >gi|283548474|gb|GG730303.1| GENE 168 171651 - 172046 331 131 aa, chain - ## HITS:1 COG:STM3230 KEGG:ns NR:ns ## COG: STM3230 COG5393 # Protein_GI_number: 16766529 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 130 1 130 132 196 88.0 7e-51 MADSQHAQGPGKSVLGIGQRILTILVEIVETRLRLAVVELEEEKSNLIQILLMLGLTMLF AAFGLMSLMVLIIWAIDPQYRLNAMIATTVVLLVMALIGGIWTLRKARKTTLLRHTRHEL ANDRKALEDDA >gi|283548474|gb|GG730303.1| GENE 169 172049 - 172354 399 101 aa, chain - ## HITS:1 COG:STM3229 KEGG:ns NR:ns ## COG: STM3229 COG4575 # Protein_GI_number: 16766528 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 101 1 101 101 134 84.0 3e-32 MSKDNATDNLRAELKSLADTLEEVLSSSGDKSKEEMSKIRSKAEHALRESRHRLSETSDV IAKQTREAAAKADNYVRENPWTGVGIGAAVGVVLGVLLSRR >gi|283548474|gb|GG730303.1| GENE 170 172388 - 172756 429 122 aa, chain - ## HITS:1 COG:no KEGG:CKO_04499 NR:ns ## KEGG: CKO_04499 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 122 1 122 122 145 84.0 4e-34 MKYRIALAISLFALSAGSYATTLCQEKEQDIQREISYAEKHNNQSRINGLNKALSEVRAN CSDSKLRADHQKKITEQKNEIAERQHDLAEAKQKGDADKIAKREHKLAEAQNELKELESR DY >gi|283548474|gb|GG730303.1| GENE 171 172905 - 173288 393 127 aa, chain - ## HITS:1 COG:no KEGG:CKO_04498 NR:ns ## KEGG: CKO_04498 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 127 1 127 127 190 81.0 2e-47 MLKSCITLRRLAWTTTFMLFIGALLLTWSLIRQQESTLAIRAINQGASMPDGFSIWHHLD ANGIRFKSITPQNDALLITFDSSAQSAAAKVVLDRTLPHGFVIAQQDDDNQAVQWLSRLR DTPHRFG >gi|283548474|gb|GG730303.1| GENE 172 173292 - 173954 604 220 aa, chain - ## HITS:1 COG:STM3226 KEGG:ns NR:ns ## COG: STM3226 COG0586 # Protein_GI_number: 16766525 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Salmonella typhimurium LT2 # 1 220 1 220 220 368 94.0 1e-102 MELLTQLLNALWAQDFETLANPSMIGMLYFVLFTILFLENGLLPAAFLPGDSLLVLVGVL IAKGAMGFPQTVLLLTTAASLGCWLSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK HGLSALLVGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYLLGKTPV FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG >gi|283548474|gb|GG730303.1| GENE 173 174302 - 175093 783 263 aa, chain - ## HITS:1 COG:ECs3976 KEGG:ns NR:ns ## COG: ECs3976 COG2186 # Protein_GI_number: 15833230 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 263 1 263 263 471 90.0 1e-133 MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIM LEVEGYVEVRKGSGIHVISNQPKHYVAPDENLEFASYGPFELLQARQLIESNIAEFAATQ VTKQDIMKLMEIQEKSRNEKSFRDSEWDLQFHVQVALATQNSALAAIVEKMWTQRIHNPY WKKLHDHIDLRTVDNWCDDHDQILRALIRKDPHAAKLAMWQHLENTKQMLFNETSDDFEF NADRYLFTENPVVHLDTAANGAK >gi|283548474|gb|GG730303.1| GENE 174 175213 - 176514 1597 433 aa, chain - ## HITS:1 COG:ECs3975 KEGG:ns NR:ns ## COG: ECs3975 COG0477 # Protein_GI_number: 15833229 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 432 41 471 472 736 93.0 0 MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELHISTQQYSYIIAAYSAAYTV MQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLALARGAVGAAEAAMIPAGL KASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGALSFIWAMS WLVFYKHPRDQKKLSDEERDYILNGQESQHKNTTSKKMSLGQILRNRQFWGIALPRFLAE PAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFADLGCIVGGYLPPLFQRWFGVNLIV SRKMVVTMGALLMIGPGMIGLFTSPYIAIALLCIGGFAHQALSGALITLSSDVFGRNEVA TANGLTGMSAWLASTLFALVVGALADTIGFSPLFAVLAVFDLLGALVIWTVLQNKSASEI DSGPQTGDPATQS >gi|283548474|gb|GG730303.1| GENE 175 176987 - 178399 1692 470 aa, chain + ## HITS:1 COG:ECs3974 KEGG:ns NR:ns ## COG: ECs3974 COG1904 # Protein_GI_number: 15833228 # Func_class: G Carbohydrate transport and metabolism # Function: Glucuronate isomerase # Organism: Escherichia coli O157:H7 # 1 470 1 470 470 951 94.0 0 MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAENYRFNNLYDIWLKGDHY KWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLS PATSDEIWDRCNELLAQDQFSARGIMKQMNVKMVGTTDDPIDSLEHHASVAKDGSFDVKV LPSWRPDKAFNIELATFNDYMAKLGEVSDTDIRRFSDLQAALTKRLDHFAAHGCKVSDHA LDVVLFAESNESELDSILARRLAGETLSEHEVAQFKTAVLVFLGAEYARREWVQQYHIGA LRNNNLRQFKLLGADVGFDSINDRPMAEELSKLLSKQNEQNLLPKTILYCLNPRDNEVLG TMTGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQLAQLGLLSRFVGMLTDSRSFLSYT RHEYFRRILCQMIGRWVAAGEAPADIQLLGEMVKNICFNNARDYFAIELN >gi|283548474|gb|GG730303.1| GENE 176 178415 - 179902 1551 495 aa, chain + ## HITS:1 COG:ECs3973 KEGG:ns NR:ns ## COG: ECs3973 COG2721 # Protein_GI_number: 15833227 # Func_class: G Carbohydrate transport and metabolism # Function: Altronate dehydratase # Organism: Escherichia coli O157:H7 # 1 495 1 495 495 937 90.0 0 MQYIKIHALDNVAVALADLAEGTEVTVDGQVITLRQAVTRGHKFALRNIAQGENVVKYGL PIGHTLVDVAAGEHIHAHNTRTNLSDLDTYSYQPDFQTQEAQPADRDVQIYRRANGEVGV RNELWILPTVGCVNAMARQMQTRFLKETNDAEGIDGVHLFSHTYGCSQLGDDHVNTRTML QNMVRHPNAGAVLVVGLGCENNQVDAFRETLGEYDPERVHFMVCQHQEDEVEAGIEHLHQ LYNVMRNDKREPGKLGELKFGLECGGSDGLSGITANPMLGRFSDYVIANGGTTVLTEVPE MFGAEQLLMDHCRDEATFGKLVTMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEDKSL GCTQKAGSSNVVDVLRYGERLKTPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPY GGFVPTVKIATNSELAAKKKHWIDFDAGQLIHGKAMPQLLNEFVDAIVDFANGKQTCNER NDFRELAIFKSGVTL >gi|283548474|gb|GG730303.1| GENE 177 180246 - 181490 1472 414 aa, chain - ## HITS:1 COG:STM3225 KEGG:ns NR:ns ## COG: STM3225 COG3633 # Protein_GI_number: 16766524 # Func_class: E Amino acid transport and metabolism # Function: Na+/serine symporter # Organism: Salmonella typhimurium LT2 # 1 414 1 414 414 660 95.0 0 MTTQRSSGLLSRLVQGSLVKQILIGLVLGILLALVSKPAAEAVGLLGTLFVGALKAVAPI LVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSASDIV PPSGIVEVMRSLLMSMVSNPIDALLNANYIGILVWAVGLGFALRHGNETTKNLVNDMSNA VTFMVKLVIRFAPIGIFGLVSSTLATTGFATLWGYAQLLTVLVGCMLLVALVVNPLLVFW KIRRNPYPLVLTCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINM AGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFG IPNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDERLANNALRS >gi|283548474|gb|GG730303.1| GENE 178 181432 - 181638 94 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIWTQKSGDFASREFIFPYTQPGKHFVTSRKMRHQNAHWMSNNTMKGLLHDYATFIGAAL AFGAREPG >gi|283548474|gb|GG730303.1| GENE 179 181735 - 182778 1285 347 aa, chain - ## HITS:1 COG:STM3224 KEGG:ns NR:ns ## COG: STM3224 COG0861 # Protein_GI_number: 16766523 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Salmonella typhimurium LT2 # 26 347 1 322 322 522 90.0 1e-148 MARSMHKKQRLTSFGVGRFFMHGGIMNTVGTPLLWGGFAVVVVIMLAIDLLLQGRRGAHT MSMKQAATWSIVWVTLSLLFNAAFWWYLTQTQGRAVADPQALAFLTGYLIEKSLAVDNVF VWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGSWLIAQFEWLLYVFGAFLLFTG VKMALAKEDASGIGDRPLVRWLRGHLRMTDTIEDEKFFVRKNGLLFVTPLMLVLILVELS DVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLSVILVF IGIKMLIVDFYHIPIAISLGVVFGILFVTLIVNAWVNHQNDKKQQIQ >gi|283548474|gb|GG730303.1| GENE 180 182972 - 183970 1020 332 aa, chain - ## HITS:1 COG:STM3223 KEGG:ns NR:ns ## COG: STM3223 COG0673 # Protein_GI_number: 16766522 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Salmonella typhimurium LT2 # 1 332 1 332 332 554 81.0 1e-157 MIRFAVIGTNWITRQFVDAAHETGKYKLTAVYSRSLEQAQTFANDYLVEHLFTSLEAMAK SDAIDAVYIASPNSLHFPQTELFLQHKKHVICEKPLASNLAQAEAAIACARENQVVLFEA FKTASLPNFLLLQQSLPKVGRIRKAFINYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDI GFYCLASAVALWGEPLSVQASASLLESGVDAHGVVLLNYGDFSVTLQHSKVSDSVLASEI QGESGSLVIEHISECQKLCFVARGGKTQDLTVPQHINTMLYEAEAFAHLVESGEVDHPAL NVSRITAKLQTEIRRQTGVVFPADEAVTSLTA >gi|283548474|gb|GG730303.1| GENE 181 184043 - 184543 587 166 aa, chain - ## HITS:1 COG:ECs3967 KEGG:ns NR:ns ## COG: ECs3967 COG1451 # Protein_GI_number: 15833221 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Escherichia coli O157:H7 # 1 164 13 176 179 305 92.0 3e-83 MSQLTYLQGYPESLLAQVRTLIAEQRLGSVLEKRYPGTHDFATDKALWQYTQDLKNQFLR NAPPLNKVMYDSKIHVLKNALGLHTAVSRVQGGKLKAKAEIRVATVFRNAPEPFLRMIVV HELAHLKEKEHDKAFYQLCCHMEPQYHQLEFDTRLWLTQQSLKQSA >gi|283548474|gb|GG730303.1| GENE 182 184628 - 185764 435 378 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225082609|ref|YP_002654106.1| ribosomal protein L11 methyltransferase, putative [marine gamma proteobacterium HTCC2148] # 13 371 18 368 371 172 31 2e-41 MSHIDNGFRSLSLKRFPETDDVNPLLAWEAADEYLLQQLDDTEISGPVLILNDTFGALGC ALAEHTPYSIGDSYLSELATRENLRHNDIAESSVRFLDSTAEYPQAPGVVLIKLPKTMAL LEQQLRALREVVTPQTRIIAGAKARDVHTSTLELFEKVLGPTTTTLAWKKARLINCTFSK PELAAASQTLSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPDNLEGEIVDLGCGNG VIGLTLLEKNPQASVVFVDESPMAVASSRLNVESNMPEALDRCEFMINNALSGVEPFRFN AVLCNPPFHQKHALTDNIAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCETI ATNNKFVILKSVKLGRRR >gi|283548474|gb|GG730303.1| GENE 183 186222 - 188240 2134 672 aa, chain - ## HITS:1 COG:fadH_1 KEGG:ns NR:ns ## COG: fadH_1 COG1902 # Protein_GI_number: 16130976 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Escherichia coli K12 # 1 354 1 354 354 674 90.0 0 MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEHPDGAQRLAAFYAERARHGVALIVTGGV APSLSGVGMEGGAVLNDASQLAHHRVITDAVHDEGGKIALQILHTGRYSYQPHLVAPSAI QAPINRFTPHELTHDEVLQLIEDFAHCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQR DDEWGGEYANRMRFAVEVVRAVRQRAGNDFIIIFRLSMLDLVENGGTFDETVQLAQAIEA AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVTIPLVTTNRINDPKVADDIL ARGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRA CHETKMPIVAATVPKNLAVVGAGPAGLAFAINAAARGHHVTLFDAHSEIGGQFNIAKQIP GKEEFYETLRYYRRMIEVTGVTLKLNHVVSARDLETFDEAILASGIEPRMPPIAGIDHPK VLSYLDVLRDKAPVGKRVAIIGCGGIGFDTAMYLSQPGDPTSQNIAEFCVEWGIDTSLQQ AGGLRPEGPHLSRSSRQIVMLQRKTSKPGQGLGKTTGWIHRATLLSRGVKMIPAVSYQKI DDDGLHVVLNGEPVIFNVDNVVICAGQEPRRELVDPLHAAGKTVHLIGGCDVAMELDARR AIAQGTRLALEI >gi|283548474|gb|GG730303.1| GENE 184 188471 - 190822 2526 783 aa, chain - ## HITS:1 COG:no KEGG:ECO111_3902 NR:ns ## KEGG: ECO111_3902 # Name: ygjK # Def: putative glycosyl hydrolase # Organism: E.coli_O111_H- # Pathway: not_defined # 1 783 1 783 783 1346 82.0 0 MKKLYSLTPLACALLFSMSAHAVTATDFKDVIDRHGAPEYMRDTNSDSHQRFNPFFDLGS WHGHLLPDGPDTMGGFPGVALLTEEYINFMATNFDRLTVYQNGKKVAFAMQAYSIPGALV QKLTAPGIDVNMTLRFADSHTSLLETRITSDTALDLVWDGELLEKVEAKDGKPTSEKTVD ETYPDYQRKIVATRDGLKVTFGKVRSTWDLLTSGESEYQVHKSLPIETKVKGHRFTSKAH IKGSTTFYTTYSHLLTSLEVSKEQAQIRDILARPSSYMLASQQRWEEYLKKGLSNPDATA AQTRVAVKAIETLTGNWRVPEGAVKHNTVTPSVTARWFSGNQTYAWDSWKIAFAMVHFNP EIAKDSIRALFDWQIQPNDPIRPQDAGMILDLVTWNTIPERGGDGGNWNERNTKPSLAAW SVMEVYNVTKDKAWLEEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTENGEMLF TVKKGDKEETLSGLKKYAAVVKSGQYDSLSIPAQEAAGWESGRDDAAVFGFIDKDQLDKY VANGGKRSDWTVNFAENRDKNGNLVGYSLLQESVDQTSYMYSDNHYLAEMATILGKTEDA KHYQALAKKLADYINTCMFDPATKFFYDVRIEDQPLANGCAGKPIVERGKGPEGWSPLFN GAATQTHADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME RYGYRDEALQLADTFFSHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFL KKQ >gi|283548474|gb|GG730303.1| GENE 185 190865 - 191941 1003 358 aa, chain - ## HITS:1 COG:no KEGG:ECUMN_3562 NR:ns ## KEGG: ECUMN_3562 # Name: ygjJ # Def: hypothetical protein # Organism: E.coli_UMN026 # Pathway: not_defined # 9 356 9 356 356 504 73.0 1e-141 MTLNKNTYRALIALAFCCYLPLTVAEDNIPATHDDTKTPEITNATPSFRFYGEMGVGGYT ALEGDYKGKYEDGTYIEGGVEGQYGHWFGLIYGEGWTVQADHDGNAWVPDHGWGGFEGGI NRFWGGYRTDDKTEIILSLHNDSSLDDLQYWADFTPEFGYELPNTRDIATAVKVQNLSGD FRYSIIATPAGHTDEDKAWLHFGKYDRYSDKYIYPAMANGYIQYDLMKDVTWMGGTEITD GTGQLFVTGILTPNFGARVWHHTGRGEGLGNPGTETGTMVSAMYEAFKGFYLSTAYSYAQ HNLDNDPDTTTSYAQFGIWYEYCGGKFATAFDSRFNLGNSTDDSDNKIFLMQYYYWGH >gi|283548474|gb|GG730303.1| GENE 186 192074 - 193573 1249 499 aa, chain - ## HITS:1 COG:ECs3960 KEGG:ns NR:ns ## COG: ECs3960 COG0531 # Protein_GI_number: 15833214 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Escherichia coli O157:H7 # 26 448 23 427 477 157 29.0 4e-38 MSEKSDARYQMSLITFLFFSIAGGGFVLKGVVSQYTDWGYNSWLLYAFASLFYAIPYTFM IIELSSIKKLRESESGYQTWLNLILGRKFGFIAGFFYFYVNIFYFVDLLPNIITYFIYTC TSDVAFVTQLTNQTWFKPVISITSIALFWLATWVSMKGPKWLSRALSFSGYAGFALTMLF IIAATWKLSSGTVTFNGTPIAPEYLQHIDLSWSKVASMSWALQSLGGLEALAAYKRNIRG GDRNFRTGLILNVFIFSGIIVISSILMNFILPAEQASNLGLLSAIYVAFQQLGFPHWWTN VIALFLMITTLCGSLMLWTAAPVKMLFVDAPKGIFGHKLSEVNGEGTPVNALKMQGVVVT IIIILFMLGQFNSEMNTILIAVKNLDGGAATIPVLFMVAGYIKLRMQSSHQDYTRDFHFL GKGRFWALLSVAPIVIIFAASTVAALIPGPEDWSTNFMGSLIQLILGPVSIIAVFYYCSI MYNRWRIKNPNDNSLFNKV >gi|283548474|gb|GG730303.1| GENE 187 193672 - 196818 2165 1048 aa, chain - ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 20 1043 3 985 1087 724 36.0 0 MSVVVSDKQHIADLYAERDHVPAVLEDHQINGINKEPPRPSLFPFTSTYLAIKNIPAKAR NYLSLNGIWKFHCASNPRSRPKTFYQENYDVSAWDTIHVPGNWEAQGYDKAIYIDERFPF TTQWPEVPRDYNPVGSYRRTFTLDTSWIGREIFLQLAGARTASFIWINGQRVGYTQNAKN PAEFNITPYVKAGENTIALEIYRWSNASYVEKQDMLDMSGLEREVFIYSTDKTRIYDIYC KPELNEDYTQGLFSVSVNLKHYDHQPVELLLNAKLLDDSRDFSVLIDKNQSFIRNGTEQQ FSFADKVQAPRLWSAETPNLYTLLITLTNPQGDVIEATSHKIGFRKVQIINSQLTVNGKA IKIKGVNRHELHPTLGHVPTEENMLTDIRLMKEHNINAVRTSHFPCHSRWYQLCDEYGIY IVDEANIESHPLALKPETQIGDTESWIPVHLDRVQAMVERDKNHPCVIVWSMGNEAGTGC VFETLYQWIKEKDNSRPVQYEPAGEAHYSDIVCPMYPTLERLEQFACKGSDRPMIMIEYA HAMGNSVGILRDYWNIIDAHDNLQGGFIWEWMDHALALTNERGQKYWGYGKDYHPDKPSD GNFMNDGLIAADRTPHPHMAEVKKVYQPIRFHATDPQSGLFEIENRYDFITLSHCDIQYS ITENGHQIANGSLGCFDVKPAQRQTLHVPVENVSRQENKEYLVTLSAVTKDEAPLVGSGY EIAWEQFSLTPPAVFHVSPDAHSLSLSVQETPASIAIGSDLFTLSFERGTGRMSSLTAAG KDLILTGIEPNFWRGLTDNDLGAKLFDKSAIWQDAGKRRELSGLTIEQPSSHEAIVTTEF TLPTVNCKYTLTYAIYATGEMRISIDFTPGDRELPLLLRMGSQLTLPCEFKYIQWFGRGP VETYADRKGAKAGIYGGTTWEQFHAYPRPQESGNKTDVRWVRIVNHDGFGLEAIADGQLL NTSAWPFAASELDFVADNDGSSASGLTPLSHKHGVDVQPADITTWNIDLAQMGTGGQNSW GSLPPKDYQLPAQPYHYAFYLRIVRPDL >gi|283548474|gb|GG730303.1| GENE 188 197251 - 198234 801 327 aa, chain - ## HITS:1 COG:ebgR KEGG:ns NR:ns ## COG: ebgR COG1609 # Protein_GI_number: 16130970 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 1 327 1 327 327 525 77.0 1e-149 MATLKDIATEAGVSLATVSRVLNDDPTLNVKEETRHRILEIAEKLEYKSSSSHRTQVNVV NQHHILALYSYQQKLEINDPYYLSIRHGIETQCEKLGIELTNCYEHHSVPAIKKLTGVLV VGKASEAICHTAASLTDNICFIDFQPPGGKYDFVDTNLRQISQEIIDFFIQQGATRIGFI GGQDVPGDADIREVAFAEYGKLKGVVSESDIYRGSFSSASGYDLAKEMLAKKDYPSALFV ASDSIAIGVLRAIHEEGIRIPEQISLISINDIPTARFTFPPLSTVRIHSEMMGIQGVNLL IEKVRDGRVLPLQVYVPSQLKLRGTTR >gi|283548474|gb|GG730303.1| GENE 189 198386 - 198718 368 110 aa, chain + ## HITS:1 COG:ECs3956 KEGG:ns NR:ns ## COG: ECs3956 COG0073 # Protein_GI_number: 15833210 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Escherichia coli O157:H7 # 1 110 1 110 110 189 90.0 2e-48 MDNVAFADFARMEIRVGKIAHVKRHDNADKLYIVQVDVGGHTLQTVTSLVPYYSEEELMG KTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERPMPAGVRIV >gi|283548474|gb|GG730303.1| GENE 190 198796 - 200085 1164 429 aa, chain - ## HITS:1 COG:ygjG KEGG:ns NR:ns ## COG: ygjG COG4992 # Protein_GI_number: 16130968 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Escherichia coli K12 # 1 428 68 495 496 837 95.0 0 MKSLNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFVDCLGG FGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALAPGKLKYSFFCNSG TESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHV PFGDINAMRTMLSECKKTGDDVAAVILEPIQGEGGVILPPQGYLTAVRKLCDEFGALMIL DEVQTGMGRTGKMFACEHENVQPDIMCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHT TTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVHDVRGKGML MAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCDLVLRSTRKALA ALRVSVEQV >gi|283548474|gb|GG730303.1| GENE 191 200606 - 202126 1391 506 aa, chain + ## HITS:1 COG:Zaer_2 KEGG:ns NR:ns ## COG: Zaer_2 COG0840 # Protein_GI_number: 15803613 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Escherichia coli O157:H7 EDL933 # 125 506 1 382 382 571 84.0 1e-162 MSAHPYVSQQNTPLDDDITLMSTTDLQSYITHANDTFVQVSGYQLNELLDKPHNLVRHPD MPKAAFADMWYTLQQGEPWSGIVKNRRKNGDHYWVRANAVPMVREGQVTGYMSIRTRATD EEIAAVEPLYKALNEGRCNRRIHKGLVVRKGWLGKLPALPIRWRVRGVMAVMFALLAAAL QQIGAEWGLLLMSALVMILGTAIFEWQIVRPIENVARQALKVATGERNSVSHLNRSDELG LMLRAVGQLGLMCRWLIHDVSSQVSCVRSDSETLAKGSDDLNKHTQQTVENVQETVTTMN QMAASVKQNSQTAAAADKLSIAASSAATHGGEAMDAVIKTMDDIANSTQRIGTITTLIND IAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSASAANDIRKLIDASADKVQS GSDQVHAAGRTMDDIVAQVQNVTQLIAQISHSTLEQSDGLSSLTRAVNELSSITQKNAEL VEESAQISAMVKHRAGRLEDAVTVLH >gi|283548474|gb|GG730303.1| GENE 192 202123 - 202737 677 204 aa, chain - ## HITS:1 COG:STM3215 KEGG:ns NR:ns ## COG: STM3215 COG1695 # Protein_GI_number: 16766514 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Salmonella typhimurium LT2 # 1 204 2 215 215 265 73.0 5e-71 MQNHHEGCCKHTEHQHEGCCKGEGHHHEGCHKEHHHEQGCGHHHGRGGGRRQRFFGHGEL RLVILEILTRDASHGYELIKAIETLTQGNYTPSPGVIYPTLDLLQDQELIAISDEEGGRK QIAITTQGRQWLDENREHLEHIHERIKARCVGFELRKNPQMKRALENFKAVLDLRVNHGD TSDAQIKKIIGIIDRAALDITQLD >gi|283548474|gb|GG730303.1| GENE 193 202853 - 203749 626 298 aa, chain + ## HITS:1 COG:yqjH KEGG:ns NR:ns ## COG: yqjH COG2375 # Protein_GI_number: 16130965 # Func_class: P Inorganic ion transport and metabolism # Function: Siderophore-interacting protein # Organism: Escherichia coli K12 # 45 297 3 254 254 413 75.0 1e-115 MGKHQSNGGYIKKCLAIFFISNHYHLKMSLDISYYLHKGEKMTKNTSRYPQRVHNELRFR ELTVLRVERISAGFQRIVLGGDALDGFSSHGFDDHTKVFFPEPGSHFVPPVVTDEGIVWA DGVRPLSRDYTPLYDETRHELALDFYIHDGGVASSWAMNAREGDKLTIGGPRGSLVVPEE YAYQVYVCDESGMPALRRRLESLNRLAVRPNVTALVSVQDAAYQDYFAHLDGFTIHWFIG HDERAVNDHLSRLSVPADDYFIWITGEGKVVKNLSARFETRAFDQQLVRATAYWHQRR >gi|283548474|gb|GG730303.1| GENE 194 203750 - 204487 542 245 aa, chain - ## HITS:1 COG:PA0163 KEGG:ns NR:ns ## COG: PA0163 COG2207 # Protein_GI_number: 15595361 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 1 242 17 258 265 158 34.0 1e-38 MTELPQDVYFRSYVLEANHHVPQHSHSFMQFHFARKGSMRIDVAGKCWIIPAHYGIWIPN NTEHGVWALDDVYLENLDIKPGFLEESINECKVVAISDFAREFIHYATNSISGHYDSHSK EGKLVSVLVDIILQLPEVAFVLPWPHDRELTRVCRTIQESPALEHSVEYWAQHLGMSART FSRHFKKETGLPFSVWKQKMRILESVLMLKKNKSVTAVALDVGYSSTAAFSYAFRQAFGV PPSNY >gi|283548474|gb|GG730303.1| GENE 195 204667 - 205821 1155 384 aa, chain + ## HITS:1 COG:STM1427 KEGG:ns NR:ns ## COG: STM1427 COG2230 # Protein_GI_number: 16764775 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cyclopropane fatty acid synthase and related methyltransferases # Organism: Salmonella typhimurium LT2 # 1 384 1 382 382 608 72.0 1e-174 MNSLCSDAVIVNEINDNWTRMGKELLSQADIRINGSRAWDIQLHHTGFFKRVLQQGSLGL GESYMEGWWDCERLDILFCKILKAKLDQQMPGNLKDILRIASARLFNLQSRSRAWIVGKE HYDIGNDLFALMLDPHMQYSCAYWKDATTLDDAQNAKLKMICEKLQLKPGMRLLDIGCGW GGLAEYAARHYGVAVEGVTISQEQQKMAQQRCEGLDVNILLQDYRDLDKHYDRIVSVGMF EHVGPKNYDTYFSIVDRCLKPDGLFLLHTIGSNKKGMSVDPWINKYIFPNGCLPAISHIA EASESRFVMEDWHNFGSDYDKTLMAWHERFNQAWPELSSRYSATFRRMFNYYLCACAGAF RARDIELWQVLFSRGVEGGIRVYR >gi|283548474|gb|GG730303.1| GENE 196 206198 - 207856 1914 552 aa, chain - ## HITS:1 COG:mll5296 KEGG:ns NR:ns ## COG: mll5296 COG2376 # Protein_GI_number: 13474417 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Mesorhizobium loti # 3 547 2 541 547 426 51.0 1e-119 MSQFFFNQRTQLVSDVIDGTIITSPWNNLARLESDPAIRVVVRRDLNKNNVAVISGGGSG HEPAHVGFIGKGMLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGL AAEKARRLGYNVEMLIVGDDISLPDNKHPRGIAGTILVHKIAGYFAERGYNLATVLREAQ YAANNTFSLGVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVIDTQNSAQVVNLM VDKLLTALPETGRVAVMMNNLGGVSVAEMAIITRELACSPLHSRIDWLIGPASLVTALDM KGFSLTAIVLEESIEKALLAEVETSNWPTPVPPREVSTLPSSQRSARVEFQPSANALVAG VVELITGTLSDLEAHLNALDAKVGDGDTGSTFAAGAREIASLLHRQQLPLDNLATLFALI GERLTVVMGGSSGVLMSIFFTAAGQKLEQGANVAEALNTGLAQMKFYGGADEGDRTMIDA LQPALTSLLAQPQNLHAAFDAAQAGAERTCLSSKANAGRASYLSSESLLGNMDPGAHAVA MVFKALAESELG >gi|283548474|gb|GG730303.1| GENE 197 208418 - 209515 1313 365 aa, chain + ## HITS:1 COG:STM4108 KEGG:ns NR:ns ## COG: STM4108 COG0371 # Protein_GI_number: 16767374 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Salmonella typhimurium LT2 # 1 363 1 363 367 429 58.0 1e-120 MLKVIQSPAKYLQGPDASTLFGQYAKNLADSFFVIADDFVMKLAGEKVLNGLHSHDISCH AERFNGECSHVEINRLIAILKQHGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIAST DAPTSALSVIYTEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVAGMGDALSTWFEAK ACYDARATSMAGGQSTVAALSLARLCYDTLLAEGEKARFAAQAGVVTDALERIVEANTYL SGIGFESSGLAGAHAIHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPMEEIETVLNFC QKVGLPVTLAEMGVKDDIDGKIMAVAKATCAEGETIHNMPFPVTPESVHAAILTADLLGQ QWLAR >gi|283548474|gb|GG730303.1| GENE 198 209606 - 211531 1914 641 aa, chain + ## HITS:1 COG:ycgU KEGG:ns NR:ns ## COG: ycgU COG3284 # Protein_GI_number: 16129164 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; K Transcription # Function: Transcriptional activator of acetoin/glycerol metabolism # Organism: Escherichia coli K12 # 1 638 4 641 642 937 71.0 0 MTAHTHSIGKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAA LEDAWEFMDGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSL ATMPGQPTKTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHESVSDLSLTLA IAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDA QASQGKNIHDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFI LLLHPVEQMRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVG KELLSQAIHNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTL FLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQ LYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSTSLKIDDDALAQLVAYSWPGND FELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAA RVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRKHLE >gi|283548474|gb|GG730303.1| GENE 199 211509 - 212039 729 176 aa, chain - ## HITS:1 COG:STM2050_1 KEGG:ns NR:ns ## COG: STM2050_1 COG2096 # Protein_GI_number: 16765380 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 4 170 3 169 183 134 47.0 6e-32 MYRIYTRTGDKGTTALFGGSRIDKDDIRVDAYGTVDELISQLGVCYASSRQAELREDLHA MQKMLFVLGAELASDEKGLTRLHQRIGEEDIQALEQLIDRNMAQSGPLKEFVIPGKNLAS AQLHVARTLTRRLERILIAMDRTLTLRDELKRYINRLSDALFSMARIEETTPDVCA >gi|283548474|gb|GG730303.1| GENE 200 212040 - 212393 332 117 aa, chain - ## HITS:1 COG:no KEGG:KP1_4786 NR:ns ## KEGG: KP1_4786 # Name: dhaG # Def: glycerol dehydratase-reactivation factor # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 1 115 1 115 117 129 64.0 3e-29 MTLSSPGVHLFYHSRWQDTRVLDELCWGLEEQGVPCRAICCDEHNCALALSKLAAKSSTL RVGLGLSASGDIALTHAQLPEDRALVRGHIAAGVDQIRTLGANAGQLVKVLPFSEIT >gi|283548474|gb|GG730303.1| GENE 201 212410 - 213573 1684 387 aa, chain - ## HITS:1 COG:MA2630 KEGG:ns NR:ns ## COG: MA2630 COG1454 # Protein_GI_number: 20091453 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Methanosarcina acetivorans str.C2A # 6 386 21 399 400 356 50.0 5e-98 MSYRMFDYLVPNVNFFGPNAISVVGERCKLLGGKKALLVTDKGLRAIKDGAVDKTLAHLR EAGIEVVVFDGVEPNPKDTNVRDGLEVFRKAQCDIIVTVGGGSPHDCGKGIGIAATHEGD LYSYAGIETLTNPLPPIVAVNTTAGTASEVTRHCVLTNTKTKVKFVIVSWRNLPSVSIND PLLMLGKPAPLTAATGMDALTHAVEAYISKDANPVTDAAAIQAIRLIARNLRQAVALGSN LKARENMAYASLLAGMAFNNANLGYVHAMAHQLGGLYDMPHGVANAVLLPHVARYNLIAN PEKFADIAEFMGENTDGLSTMDAAELAIHAIARLSADIGIPQHLRDLGVKEADFPYMAEM ALKDGNAFSNPRKGNEKEIAGIFQQAF >gi|283548474|gb|GG730303.1| GENE 202 213596 - 214024 323 142 aa, chain - ## HITS:1 COG:STM2050_2 KEGG:ns NR:ns ## COG: STM2050_2 COG3193 # Protein_GI_number: 16765380 # Func_class: R General function prediction only # Function: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol # Organism: Salmonella typhimurium LT2 # 3 136 12 144 153 90 41.0 9e-19 MNKSQPIATITLAAAKEMARAVEAKALEINVPVVFSVVDHGGNTLLMQRMDDAFITSCDI SLNKAYTACCLRQGTHEITDAVQPGASLYGLQLTNQQRIVIFGGGLPVILNGKLIGAVGV SGGTVEQDKLLAETALNCFSEL >gi|283548474|gb|GG730303.1| GENE 203 214416 - 216083 1919 555 aa, chain + ## HITS:1 COG:lin1117 KEGG:ns NR:ns ## COG: lin1117 COG4909 # Protein_GI_number: 16800186 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Listeria innocua # 3 555 2 554 554 816 73.0 0 MRRSKRFEVLAKRPVNQDGLIGEWPEEGLIAMESPYDPASSVKVEKGRIVELDGKSRAEF DMIDRFIADYAINVAETERAMQLDALEIARMLVDIHVSREEIIAITTAITPAKAVEVMAQ MNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYA PFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTESVFTDGDDTP WSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIFITKGAGVQGLQNGA VSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDF IFSGYSAVPNYDNMFAGSNFDAEDFDDYNILQRDLMVDGGLRPVTEEETIAIRNKAARAI QAVFRELGLPLISDEEVEAATYAHGSKDMPARNVVEDLAAVEEMMKRNITGLDIVGALSC SGFEDIASNILNMLKQRVTGDYLQTSAILDRQFEVVSAVNDINDYQGPGTGYRISAERWA EIKNIAGVVQPGSIE >gi|283548474|gb|GG730303.1| GENE 204 216095 - 216679 646 194 aa, chain + ## HITS:1 COG:mll6722 KEGG:ns NR:ns ## COG: mll6722 COG4909 # Protein_GI_number: 13475607 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, large subunit # Organism: Mesorhizobium loti # 18 191 578 751 756 119 45.0 3e-27 MECTTERKPVFTLQVSEGEAAKADERVDEVVIGVGPAFDKYQHKTLIDMPHNAILKELVA GIEEEGLHARVVRILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPLSNLEL FSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAALFHIKETKHVVQ DAAPITLHIALVRE >gi|283548474|gb|GG730303.1| GENE 205 216682 - 217110 472 142 aa, chain + ## HITS:1 COG:lin1119 KEGG:ns NR:ns ## COG: lin1119 COG4910 # Protein_GI_number: 16800188 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Propanediol dehydratase, small subunit # Organism: Listeria innocua # 4 138 33 167 170 142 54.0 1e-34 MNDDIMTAQDYPLASRCPEKIQTPGGKPLTDITLENVLAGKVGPQDVRISRQTLEYQAQI AEQMQRHAVARNFRRAAELIAIPDARILEIYNALRPFRSSFAELQAIADELEHTWHATVN AGFVRESAQVYQQRNKLRKGSQ >gi|283548474|gb|GG730303.1| GENE 206 217121 - 218935 1999 604 aa, chain + ## HITS:1 COG:no KEGG:KPN_03486 NR:ns ## KEGG: KPN_03486 # Name: orfZ # Def: glycerol dehyrdratase activator # Organism: K.pneumoniae # Pathway: not_defined # 1 602 1 606 607 892 83.0 0 MPLIAGIDIGNATTEVALAQDGRFVASGIVATTGMKGTRDNIAGVVASLQQALDKTSYSL QDVAKICINEAAPVIGDVAMETITETIITESTMIGHNPQTPGGVGVGMGTTIAVAQLAAL REDQFAQGWIPLVNEEIDFLEAVWLINAALDRGVNVVAAILKKDDGVLVNNRLRRTMPVV DEVTLLEKVPEGVLAAVEVAAAGQVVRVLSNPYGIATFFALTPEETQTIVPIARALIGNR SAVVLKTPQGDVQSRTIPAGKIFIRGEKRGGEADVAQGAQAIMQAMSACAPVCDIRGESG THAGGMLERVRKVMASLTGHDMNAVHIQDLLAVDTFIPRKVQGGIAGECSMENAVGIAAM VKSDRLQMQAIASELSARLNTPVEVGGVEANVAVAGALTTPGCAAPLAILDLGAGSTDAA IINSDGAVKAVHLAGAGNMVSLLMQTELGLSDPFLAEEIKKYPLAKVESLFSIRHENGAV EFFREPLSPSVFAKVVYLKEGELIPVENQTSLEKIRLVRRQAKEKVFVTNCLRALRQVSP GGSIRDITFVVLVGGSSLDFEIPQMITDALAHYGVVAGQGNIRGTEGPRNAVATGLVLAG EAKK >gi|283548474|gb|GG730303.1| GENE 207 219069 - 219368 279 99 aa, chain + ## HITS:1 COG:no KEGG:STM0327 NR:ns ## KEGG: STM0327 # Name: not_defined # Def: cytoplasmic protein # Organism: S.typhimurium # Pathway: not_defined # 1 99 9 107 107 191 97.0 7e-48 MPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPASPEVVMARGEQEGWNP EFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV >gi|283548474|gb|GG730303.1| GENE 208 219666 - 221087 1061 473 aa, chain + ## HITS:1 COG:STM0329 KEGG:ns NR:ns ## COG: STM0329 COG0065 # Protein_GI_number: 16763709 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Salmonella typhimurium LT2 # 1 473 1 473 473 860 90.0 0 MSAKTLYEKLVASHTVRELDNEGHVLLYIDRSILNEYTSPQAFSGLREQGRPVRHPDAFL LNVDHVNPTRPQRDMLMTDPGGQLQVDYFRENAADFGITLFDVLDPRQGIEHVVAHEQGL VMPGMVIAAGDSHTTTYGAFGALGFGIGTSEIEHLLATQTLVYRKLKTLRVSVKGELPFG CSAKDIVLELLERTGADGATGYAIEFDGETIDALSVEGRMTLCNMAVEAGARGAIIAPDQ KVFDYICGKPQMPSGELWQQALQEWSQLRSDADAVFDKSITIDCRDLEPKVTWGISPDQT CAIGGHVPFPEQETQPLKRLALEKALQYMELRPGTPLSDIRISHAFIGSCTNGRIEDLRA VAKVVAGRSIASHVRGIIVPGSTQVRRQAEDEGLAKIFIDAGFEWRQSGCSMCLAMNEDV LAPGDRCASGTNRNFPGRQGAGARTHLMSPAMVAAAAIAGHLVDVRTLLQAGE >gi|283548474|gb|GG730303.1| GENE 209 221089 - 221715 587 208 aa, chain + ## HITS:1 COG:STM0330 KEGG:ns NR:ns ## COG: STM0330 COG0066 # Protein_GI_number: 16763710 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Salmonella typhimurium LT2 # 1 207 1 207 208 365 87.0 1e-101 MDTFKQISGRIAPMLEPNIDTDVIMPKQFLKGIDRQGLNKGVFFDRRFLANGQPNPDFIL NMPGWQEATFLLVGPNFGCGSSREHAVWGLKQLGIRALIGSTFAGIFDDNCQRNGILTIS LDEAALAYLAQLAAKADGNLIAVSLDRCEIVAAGEKIPFAISELKREMLMAGEDAIAWTL QYLPEIEKFEAQHYARRPWLKRPASPRV >gi|283548474|gb|GG730303.1| GENE 210 221777 - 222691 598 304 aa, chain + ## HITS:1 COG:STM0332 KEGG:ns NR:ns ## COG: STM0332 COG0596 # Protein_GI_number: 16763712 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Salmonella typhimurium LT2 # 1 304 1 304 304 578 86.0 1e-165 MSTVIECGASPFIPGFVLKNVRLANGLTLRVAVGGSGSPLVLVHGHPQNHITWRKVAPEL AKDHTVIMPDLRGYGDSDKPASDPAHRTYSKRMMAQDIVMLMEILGYSRFAFVGHDRGGR VGHRLALDYPDSLTSCTFIDIAPTATMYALTDKAFATRYFWWFFLIQPFPLPETMIAHDP AFFLRKHIAGQLKTEGATSEDAFNEYLRCYQNPEMIHAVCEDYRAAASIDLDDDAADASA RIQCPLQLLWGAQGTVGQLYDVVDTWREKAINVQGEALPCGHSPQEEIPGIFIQKLQFFL RSVL >gi|283548474|gb|GG730303.1| GENE 211 222725 - 223693 601 322 aa, chain + ## HITS:1 COG:STM0333 KEGG:ns NR:ns ## COG: STM0333 COG0583 # Protein_GI_number: 16763713 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 317 1 317 321 629 92.0 1e-180 MKTTPVGKKHRQPLEGWPSVEDLFVFITVARNGGFARAALELGLSPSYVSKRIAILEKCL NVRLFFRNSRVMRLTPEGENALEGAMQVVSEMDGFVSRLDNQRGALTGNITINCSFGFGQ KYVAEALSAFMLAYPDITVKLTLTDREVDLVEEGVDVEIRVGDDINELYIARQLATNRRI LCASPEYLARHGTPESVSALVQHDCLMIQEKNSAFGNWLLTDGRQQTHCRLNRFHSSNSG SVVLIWALKGHGITLRSVWDVAQYIERGELVHVLPQWYQEANIWAVYTRRSSSSDRIKTC IDFLTDYLAQCLPDGKAGRDNQ >gi|283548474|gb|GG730303.1| GENE 212 223753 - 226599 1108 948 aa, chain - ## HITS:1 COG:yejO KEGG:ns NR:ns ## COG: yejO COG3468 # Protein_GI_number: 16130127 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Escherichia coli K12 # 30 948 4 836 836 335 32.0 2e-91 MLFKLNPIFIALFVSSGIASCNYAFAANETVDAGTTVNNGTISSGNGQIVYGTTNNISVL AGGHQTVEEGGVANGTIVNGGAMYVTGEANDTIINSGNIDVNGQATNTTINGGSVAIDAG ANSGGLTDPTLGGQMNNTTVNAGILNNRFGIDTDTTVNAGSTLQTGHAETGQASTAISQN AMINNGGAQIVDNGGTSNGSTVNSGGTMTIQYDLHQGETNSIGIQAGTANDAIVYGTLDN NGGTDNGTIVKSGGQYTATGRISVQAATSNSATIESGGNATLNDNAHASDWTIAGNATLQ DSTATMTNSTVVAGGDLKIESGTATGISVTNASMGNMGGSDVDTVLNAGANYSLGGAGSG DAKSTNLTVNAGATANINSGTVTDAAISGAMYVSPDARYTNTSTLEGTVSVNDGGSLTIL DGANTANADVTVSNSGSVILSSAQPDNFSLGNVALNGGHIVFDDSNSAGYSSLTLATLNG AGDFYINTDLADLLDDFLTVTGQANGNYGVYVADTGKSPASDASLQVIQTGGGTADFSLK NSGGVVDVGTYEYRLVNNGNGNWSLTPDLIPPDDGGNTPTPPDDGGNTPTPPDDGGNTPT PPDDGGNTPTPPDDGGSTPTPPDDGGSTPTPPDDGGSTPIPSARTITPSTAAVLNMAAVN PLVFQAELGSVRQRLNETRSFSHETNIWSDIYNTRNNASTSAGAGFDQTLTGLTIGADKS DRSSNSVITRGAFFSYSHSDVDFDRGGNGNVDSYSIGVYASYLHNNGFYLDGILKANRFE NDVNGRMTSGGTAEGYYHTNGLGAHIQGGKNFSFGNSYVAPYVALTAFTTDSSDYTLSNG MRANVDNERSLLAEAGANIGHAFALKNGAILQPYVGAAVTQEFIDDNNVDVNDDGHFTND LSGTRGVYQVGLRAQLAPRLNAHISAAYAQGANVESPWIANAGIAWSF >gi|283548474|gb|GG730303.1| GENE 213 226924 - 227781 693 285 aa, chain - ## HITS:1 COG:no KEGG:Ent638_3408 NR:ns ## KEGG: Ent638_3408 # Name: not_defined # Def: outer membrane autotransporter # Organism: Enterobacter_638 # Pathway: not_defined # 3 283 561 863 863 83 26.0 1e-14 MIHRIADDITYHLDTRQNGGNIWVSGIHSGSDRTASQSKYENSINGAQFGGYLSFTLAND DTIMAGVANGYLHNALDLSNKDGHNSVNGTYYSVYGRWEQPVTEKQMRWFADTVLTYGNM SYSASGSDAGIHAGGNYDGNTWLAQARSGMTTQAGRFELQPYVTLGYVNTQTDSFNDGYS QIGEGKQVGYFAGGGVRVATELAVKDVQSIQPYLTTGYNAQFGGSTHLNTDDYSFAGENL NGGNAGAGVTVKFNSHWAADAHIGTEFGHAIDNAVEGGLTLSYSI >gi|283548474|gb|GG730303.1| GENE 214 227815 - 229554 921 579 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086554|ref|ZP_06356131.2| ## NR: gi|291086554|ref|ZP_06356131.2| hypothetical protein CIT292_10850 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_10850 [Citrobacter youngae ATCC 29220] # 1 579 1 579 579 739 100.0 0 MIRSVLAISITLALGQQAAYAACTAYPDASCFTGNGPQTITDSGVNTPSYMVSSNDDAAS LTLSDSVVDNSAGTMRYGVEVYGNTGASLVATNDTITGQTSVLTDNGDVNVDINNSQLSA NGAKSSKGWVTALDVSNDSTTGTTNVTIENGSQITDDVVVYANAAASLNIDDSVINGAIS LSAFGDVSDVTTANISNSTIASSSAQPSVLVEGVGDVNVAISHTTITQTGAAQNESSVLA VSDDSDANLSITDSSLQNGAYVYAYQGNSNLDIADSSILGGAYAEITGGNAAINIVNSQI GPADTSSSYTVLASSSGNAASVNIENSTVDGNVGAQALGDESAQGLSQGSSVVSLSQGST VNGYIYALGIDNTINIDDATLNGNIYTGDDYHDGDTGTVNTTINLSNTAYRDDIKSEDDP SLTDNLAININDGAEIGGLTEDSSQKITGYDNVDVSLNYLNSDEINQVRTLPTDITTLDH TTYFYISNDENVQLDGGSATGGTLPAVRSGSYLLNNVSYATQKTSSDDDGSTYAVAFYTQ NGKPGPLPDNGGNTPDDGGDTPDDGGDTPPSSDNVVNDI >gi|283548474|gb|GG730303.1| GENE 215 229951 - 230352 231 133 aa, chain - ## HITS:1 COG:no KEGG:Ctu_00330 NR:ns ## KEGG: Ctu_00330 # Name: not_defined # Def: hypothetical protein # Organism: C.turicensis # Pathway: not_defined # 14 128 24 138 141 78 30.0 1e-13 MFLSAGVYAAGCSTVEEMDTADTVASSVKDWSDINSFFHKFKECDDGYIAEGLSDTIPRM LAENWNTATQLKAMTDKDKSFDAWILNHVNTTSASKDLELIIKNSNEKCADNAQAFCQKM ASAANQALQALKE >gi|283548474|gb|GG730303.1| GENE 216 230815 - 231561 -3 248 aa, chain - ## HITS:1 COG:no KEGG:SCAB_41031 NR:ns ## KEGG: SCAB_41031 # Name: not_defined # Def: hypothetical protein # Organism: S.scabiei # Pathway: not_defined # 1 244 51 295 299 155 36.0 1e-36 MGLTGRWTDKENKMGYWIPISQVESSIEAKKMQLQSHSTPNVSGNPHPNRVLSEYYTTIA NISNTISKYNGIKTRVISLLHSFISDIYYDKELEHLAESIFEKYKKEVDSLITNHARDVL QQIPSVVNRLSENEGESVSQALTTVRRIIDSFADSINPPSDETYRIGDNELSLGAAKHLN RLNVFVHERVESKSRKDKIRQNLSNLYARVSSGVHADVTVEEAKSLFLNCYLLLGEILHI GQLEKLTK >gi|283548474|gb|GG730303.1| GENE 217 232159 - 232341 222 60 aa, chain - ## HITS:1 COG:no KEGG:EC55989_2601 NR:ns ## KEGG: EC55989_2601 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_55989 # Pathway: not_defined # 1 59 6 64 64 67 67.0 2e-10 MTLKPGENSGKNGGIYVEVGPRGGVKDNFATIADNKTAPPTENPKSHWKLTKRTPNSKRK >gi|283548474|gb|GG730303.1| GENE 218 232708 - 233214 465 168 aa, chain + ## HITS:1 COG:ygjF KEGG:ns NR:ns ## COG: ygjF COG3663 # Protein_GI_number: 16130964 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Escherichia coli K12 # 1 167 1 167 168 294 84.0 6e-80 MVKDILAPGLRVAFCGINPGLSSAGTGFPFAHPANRFWKVIHQAGFTARQLKPEEAQHLL DFHCGVTKFVDRPTVQANEVKLQEMRSGGRKLIEKIEEYQPAALAILGKQAFEQGLSQRG AQWGKQTLTIGATRIWVLPNPSGLSRITLDKLVEAYREVDVALKARGI >gi|283548474|gb|GG730303.1| GENE 219 233267 - 233842 292 191 aa, chain - ## HITS:1 COG:PA4580 KEGG:ns NR:ns ## COG: PA4580 COG3236 # Protein_GI_number: 15599776 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 8 184 7 183 184 194 53.0 8e-50 MRQGNYSLEALQMAVRAGEHFDYLFFWGHRPSSSGAITASCFSQWWPSPFEVDGITYASA EHWMMAEKARLFGDESTLLRILSAKSPAEAKAFGRQVSGFNQQVWEENCFESVCKGNVHK FSQHPELGEFLISTRTLVLVEASPVDRVWGIGLAQDDERAGDPLRWNGSNLLGFALMVVR DRIANINKTEE >gi|283548474|gb|GG730303.1| GENE 220 233920 - 235767 2510 615 aa, chain - ## HITS:1 COG:STM3211 KEGG:ns NR:ns ## COG: STM3211 COG0568 # Protein_GI_number: 16766511 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Salmonella typhimurium LT2 # 1 615 46 660 660 1026 97.0 0 MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP DADDLLLAETSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA THVGSELSQEEMDDDEDEDEEDGDDDSSDDDNSIDPELAREKFAELRTQYEITRDTIKAK GRSHAAAQEEIQKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQV KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL RHPSRSEVLRSFLDD >gi|283548474|gb|GG730303.1| GENE 221 236052 - 237797 1544 581 aa, chain - ## HITS:1 COG:ECs3949 KEGG:ns NR:ns ## COG: ECs3949 COG0358 # Protein_GI_number: 15833203 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Escherichia coli O157:H7 # 1 581 1 581 581 1128 93.0 0 MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYH CFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQSLYQLM DGLNTFYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNPENRK SLVDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGDALPKYLNSPETDIFH KGRQLYGLYEAQQDNADPQRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEA RMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGETLRIYLRQELGNKLG ILDDSQLERLMPKLAENGASRPVPQLKRTTMRILIGLLVQNPGLAPLVPPLGALDSNKLP GLGLFRELVNTCLSQPGLTTGQLLEHYRGTNDAATLEKLSMWDDIADKDIAEKTFTDSLN HMFDSMLELRQEELIARERTHGLSSEERRELWTLNQELAKK >gi|283548474|gb|GG730303.1| GENE 222 237669 - 237989 96 106 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MERTARVIIFALLFQLYPRVDEIDNVGSCQQVIDKYAWDSSSHMPRYYTSSFKLSLRWLH SPTPVTYLSKLRGFTHLPRYSACSLAPSGPALALFKTLTRFVIQHE >gi|283548474|gb|GG730303.1| GENE 223 238099 - 238314 357 71 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15803607|ref|NP_289640.1| 30S ribosomal protein S21 [Escherichia coli O157:H7 EDL933] # 1 71 1 71 71 142 100 3e-32 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKL ARENARRTRLY >gi|283548474|gb|GG730303.1| GENE 224 238551 - 239564 671 337 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 3 321 519 846 860 263 45 1e-68 MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ AALKEAGLTAKEIDAVAYTAGPGLVGALLVGATVGRSLAFAWGVPAIPVHHMEGHLLAPM LEDNPPAFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG PMLSKLASQGVEKRFVFPRPMTDRPGLDFSFSGLKTFAANTIRNNENDDQTRADIARAFE DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLGEMMQKRRGEVFYARPEFCTD NGAMIAYAGMVRFKAGATADLGVTVRPRWPLAELPAA >gi|283548474|gb|GG730303.1| GENE 225 239651 - 240268 918 205 aa, chain - ## HITS:1 COG:ECs1327 KEGG:ns NR:ns ## COG: ECs1327 COG0378 # Protein_GI_number: 15830581 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Escherichia coli O157:H7 # 1 203 1 203 205 339 90.0 2e-93 MSDYKHPLRVGVGGPVGSGKTALLEALCKAMRSSYQLAVVTNDIYTKEDQRILTEAGALE PDRIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELAD LTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGASLEVMERDTLRMRGERPWT FANLKAGDGLATIIAFLEEKGMLRV >gi|283548474|gb|GG730303.1| GENE 226 240278 - 240943 474 221 aa, chain - ## HITS:1 COG:ECs1326 KEGG:ns NR:ns ## COG: ECs1326 COG0830 # Protein_GI_number: 15830580 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Escherichia coli O157:H7 # 5 221 8 224 224 299 73.0 3e-81 MRTDLRLMQLASSSLPVGSFTWSQGLEWAVEIGWVKNVDDFSDWQIQQMEQNFFTVDLPL LARLYRACEQDDLTAARRWSAYLLACRETRELRNEERSRGAAFTRLVIDWEPDCAREWRA LFVDSQLCGMAWLGVRWKIPLTKLALCLGYSWIESAVMAGVKLVPFGQQAAQRLIIALCD RYAQGLAQALACPDASLGSATPLAAIASARHETQYSRLFRS >gi|283548474|gb|GG730303.1| GENE 227 240933 - 241391 462 152 aa, chain - ## HITS:1 COG:ECs1325 KEGG:ns NR:ns ## COG: ECs1325 COG2371 # Protein_GI_number: 15830579 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Escherichia coli O157:H7 # 1 152 1 152 154 202 73.0 2e-52 MIYLTQRLDHAHRITASVTLPIDIRVKSRARVALNDGREAGLMLPRGLLLRGGDLLTTED GSEVIEVIAAPESVSVVRCADPFLLAKACYHLGNRHVPLQILPDELRYHHDHVLDDMLRQ FSLEVTFAQLPFEPEAGAYASESHGHHHSHAH >gi|283548474|gb|GG730303.1| GENE 228 241401 - 243104 1793 567 aa, chain - ## HITS:1 COG:ECs1324 KEGG:ns NR:ns ## COG: ECs1324 COG0804 # Protein_GI_number: 15830578 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Escherichia coli O157:H7 # 1 567 2 568 568 1009 86.0 0 MSEMSRQAYADMFGPTTGDKVRLADTELWIEVEKDFTTYGEEVKFGGGKVIRDGMGQGQM RAEACADLAITNALIVDHWGIVKADIGIKDGRIFAIGKAGNPDIQPNVTIPIGAGTEVIA GEGKIVTAGGVDTHIHWICPQQAQEALVSGVTTMIGGGTGPAAGTHATTCTPGPWYIARM LQAADALPVNIGLLGKGNGSNPDALREQISAGAIGLKIHEDWGATPAAIDCALTVADEMD IQVALHSDTLNESGFVEDTLAAIGDRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNP TLPYTVNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDIGAFSLTSSD SQAMGRVGEVILRTWQVAHRMKVQRGPLAEETGDNDNQRVKRYIAKYTINPALTHGIAHE VGSVEPSKLADLVLWSPAFFGVKPATIVKGGMIACAPMGDINASIPTPQPVHYRMMFGAL GAARHHTRLTFISQAADAQNIPQQLNLQSAIAVVKGCRTVKKTDMIHNGLQPNITVDAQT YEVRIDGELITSDPADVLPMAQRYFLF >gi|283548474|gb|GG730303.1| GENE 229 243097 - 243417 276 106 aa, chain - ## HITS:1 COG:ECs1323 KEGG:ns NR:ns ## COG: ECs1323 COG0832 # Protein_GI_number: 15830577 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Escherichia coli O157:H7 # 1 106 1 106 106 156 72.0 8e-39 MIPGEYQISAGNIAINQGRETCTIVVENHGDRPIQVGSHYHFYEVNPALRFDRLAARGFR LNIAAGTAVRFEPGQKREVELVRVAGAQRIVGFRREVMGALEADNE >gi|283548474|gb|GG730303.1| GENE 230 243427 - 243729 476 100 aa, chain - ## HITS:1 COG:ECs1322 KEGG:ns NR:ns ## COG: ECs1322 COG0831 # Protein_GI_number: 15830576 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Escherichia coli O157:H7 # 1 100 1 100 100 156 92.0 1e-38 MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGQTVAALMEDG RHVLRRDQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPIV >gi|283548474|gb|GG730303.1| GENE 231 243740 - 244480 579 246 aa, chain - ## HITS:1 COG:ZureD KEGG:ns NR:ns ## COG: ZureD COG0829 # Protein_GI_number: 15800663 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Escherichia coli O157:H7 EDL933 # 2 216 15 229 232 298 66.0 9e-81 MLASARHYGPLTVQRPFYPEEEVCHLYLLHPPAGIVGGDELHIAVTLDENSHALITQPGA GKFYRSRGPQALLRQHFTLASHATLEWLPQDTILFPGANAAIQSVFHLTSASRLLAWDLL CLGRPVMQETFSHGTLQNHLEVWRDDQPLLIERLQLQAGNLSAVARHPWVGTLLCYPANE VMLEGVRERLAPLGDYAGATLNDSLLTIRFLANDNLIVVRVMRDIWQFLRPLLTHKAPVQ PRIWQT >gi|283548474|gb|GG730303.1| GENE 232 244687 - 246150 1733 487 aa, chain - ## HITS:1 COG:ygjE KEGG:ns NR:ns ## COG: ygjE COG0471 # Protein_GI_number: 16130959 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Escherichia coli K12 # 1 487 1 487 487 762 93.0 0 MAPLAGWWRYLAPLVVIAIIAVLPVPAGLESHTWLYFAVFTGVIVGLILEPVPGAVVAMI GISIIAVLSPWILFSPEQLAQDGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTGYEKTG LGRRIALMLVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPPLYNSQ PNDASSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKGASHTALSWGDWFLGML PLSILLVLIVPWLAYVLYPPVLKSGDQVPRWADTELKAMGPLCAREKKMLGLMVGALVLW IFGGDYIDAAMVGYSVVALMLVLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFI TWFGKLLANGLSGYSPIMVMVALIVVFYLLRYFFASATAYTSALAPMMIAAALAMPEIPL PVFCLMVGAAIGLGSILTPYATGPSPIYYGSGYLPTVDYWRLGAIFGLIFLVLLVITGLV WMPLVLL >gi|283548474|gb|GG730303.1| GENE 233 246200 - 246829 254 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 1 199 305 504 508 102 31 1e-45 SVSHPERVMKKILTTPIKAEDLEDIRVGDVIYLSGTLVTCRDVCHRRLIELKRPIPYDLN GKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMEAFEKEFIEQTGVKLVVGKGGMGPLTEEG CKQFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGN NLIAENKKLFAERRDPIVEEICEHVHYIK >gi|283548474|gb|GG730303.1| GENE 234 246802 - 247710 262 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 24 300 21 297 508 105 26 1e-45 MSNQNKQNAVKTLTDIVANFTAMISTRMPDDVVDKLKQLREGEDSPMGKIIYHTMFDNMQ KAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEEATVKAPLRHNAVEIFDEV NTGKNTGTGVPWVTWDIIPDGDDAEIEVYMAGGGCTLPGRSKVLMPSEGYEGVVKFVFEN ISTLAVNACPPVLVGVGIATSVETAAVLSRKAVLRPIGSRHPNPKAAELELRLEEGLNRL GIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTGCWAHRRGTLLVHADLSFENLSHTRS AL >gi|283548474|gb|GG730303.1| GENE 235 247924 - 248865 837 313 aa, chain + ## HITS:1 COG:ygiP KEGG:ns NR:ns ## COG: ygiP COG0583 # Protein_GI_number: 16130956 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli K12 # 1 309 1 309 310 571 88.0 1e-163 MLNTYPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLNRSARGV VLTESGQRCYEHAQAILAGYQHLVDDVTQLKTRPAGMIRIGCSFGFGRSYIAPAITELMH SYPELQVHFELYDRQIDLAQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPTYLQKYG EPITLQELSRHDCLVTKERDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKG IMLRSEWDVQPFLASGELVRVLPDYAQSANIWAVYKEPLYRSVKLRVCVEFLATWCQHRL GKPIEGYHVPQAG >gi|283548474|gb|GG730303.1| GENE 236 248897 - 249514 485 205 aa, chain - ## HITS:1 COG:ECs3942 KEGG:ns NR:ns ## COG: ECs3942 COG0344 # Protein_GI_number: 15833196 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 205 1 205 205 370 95.0 1e-102 MSAIAPGMIIFAYLCGSISSAILVCRLAGLPDPRDSGSGNPGATNVLRIGGKGAAIAVLI FDVLKGMLPVWGAYALGVSPFWLGLIAIAACLGHIWPVFFGFKGGKGVATAFGAIAPIGW DLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFNPQFTFPVSMLSCLILLRHHDN IQRLWRRQEPKIWTKLKKKREKDPE >gi|283548474|gb|GG730303.1| GENE 237 249621 - 249989 337 122 aa, chain + ## HITS:1 COG:STM3206 KEGG:ns NR:ns ## COG: STM3206 COG1539 # Protein_GI_number: 16766506 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Salmonella typhimurium LT2 # 1 119 2 120 120 214 94.0 3e-56 MDIVFIEQLSVITTIGVYDWEQTIEQQLVFDIEMAWDNRKSAKSDDVADCLSYADIAQAV VNHVEGGRFALVERVAEEVADLLLSRFNSPWVRIKLSKPGAVARATNVGVIIERSNNLKE NN >gi|283548474|gb|GG730303.1| GENE 238 250076 - 250894 1042 272 aa, chain + ## HITS:1 COG:ECs3940 KEGG:ns NR:ns ## COG: ECs3940 COG1968 # Protein_GI_number: 15833194 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Escherichia coli O157:H7 # 1 272 1 273 273 456 94.0 1e-128 MSDMHSLLVAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAV VVMFWRRLFGLIGIHFGKAPHEGTGKGRLTLGHILLGMIPAVVLGLIFHDTIKSLFNPIN VMYALVVGGVLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATISG GMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWSFLTASDIPMFAVGFVTAFVVALVA IKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF >gi|283548474|gb|GG730303.1| GENE 239 250992 - 252233 1311 413 aa, chain - ## HITS:1 COG:STM3204 KEGG:ns NR:ns ## COG: STM3204 COG0617 # Protein_GI_number: 16766504 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Salmonella typhimurium LT2 # 1 412 1 412 413 769 91.0 0 MKIYLVGGAVRDALIGLPVKDKDWVVVGATPQEMLDAGYQQVGRDFPVFLHPRTREEYAL ARTERKSGSGYTGFTCYAAPDVTLEDDLQRRDLTINAMARDDDGEIIDPYHGRSDLQNRL LRHVSPAFSEDPLRVLRVARFAARYAHLGFRIADETMTLMRDMTAAGELEHLTSERVWKE TENALTTRNPQVFFQVLRDCGALRVLFPEVDALFGVPAPAQWHPEIDTGIHTLMTLSMAA MLSPEVDVRFATLCHDLGKALTPKALWPRHHGHGPAGVKLVEQLCQRLRVPNDIRDLAKL VAEFHDLIHTFPILQPKTIVKLFDAIDAWRKPQRVEQIALTSEADVRGRTGFEAADYPQG RLLREAWLVAQAVPTKDVVEAGFKGPAIREELTKRRIAAVASWKERRCPKPAH >gi|283548474|gb|GG730303.1| GENE 240 252296 - 252916 881 206 aa, chain - ## HITS:1 COG:STM3203 KEGG:ns NR:ns ## COG: STM3203 COG3103 # Protein_GI_number: 16766503 # Func_class: T Signal transduction mechanisms # Function: SH3 domain protein # Organism: Salmonella typhimurium LT2 # 1 206 1 204 204 326 93.0 1e-89 MPKLRLIGFTLLALSATAVSHAEEKRYVSDELNTWVRSGPGDNYRLVGTVNAGEEVTLLQ TDANTNYAQVKDSTGRTAWIPLKELNSTPSLRTRVPDLENQVKTLTDKLNNIDTTWNQRT ADMQQKVSQSDSVIDGLKQENQKLKNELIVAQKKVSAANLQLDDKQRTIIMQWFMYGGGV LGLGLLLGLVLPHMIPSRKRKDRWMN >gi|283548474|gb|GG730303.1| GENE 241 253159 - 254460 1362 433 aa, chain + ## HITS:1 COG:STM3202 KEGG:ns NR:ns ## COG: STM3202 COG3025 # Protein_GI_number: 16766502 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 433 1 433 433 707 82.0 0 MAQEIELKFIVHSDAVEALRERLNTLGGEHHAPSQLLNIYYETPDAWLRGHDMGLRIRGE NGRYEMTMKIAGRVTGGLHQRPEYNVALNAPELDLALFPAEVWPDGKQPAELASLVQPLF STDFYREKWLIDVDGSRVEIALDLGEVKAGEFAEPICELELELLSGDTQAVLKLANQLVS QTGLRQGSLSKAARGYHLAQGNAPREIKPTRILKVPAKASIEQGLEAALELALSQWQYHE ELWVRGVKGAKAEVLAAMGLVRHILMLFGGNVPRKASAHLRDLLTQSEAIMASDVSAVSA VYSTQTAMAKLALTEWLVSKGWQPFLDAKAQGKIADSFKRFSDIHLSRHAAELKTAFAQP MGDRYADQLPRLTRNIDSMLMLAGYYDENVASEWIANWQGLRHAIAANQYIEIEHFRNEA IALEPFWLHSGKR >gi|283548474|gb|GG730303.1| GENE 242 254569 - 257409 3181 946 aa, chain + ## HITS:1 COG:glnE KEGG:ns NR:ns ## COG: glnE COG1391 # Protein_GI_number: 16130949 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms # Function: Glutamine synthetase adenylyltransferase # Organism: Escherichia coli K12 # 1 946 1 946 946 1647 89.0 0 MKQLSSPLQQYWPTVVERLPAAISESSLSVQAKSVLTFSDFVRDSLIARPEWLAELESAA PQVDEWQQYAAWLQQALADVNDENTLMRELRLFRRRIMVRIAWAQTLSLVAEESILQQLS HLAETLIVAARDWLYAACCREWGTPCNPDGVAQPLLILGMGKLGGGELNFSSDIDLIFAW PEHGSTQGGRRELDNAQFFTRMGQRLIKVLDQPTMDGFVYRVDMRLRPFGDSGPLVLSFS ALEDYYQEQGRDWERYAMVKARIMGDADGTYVNELRAMLRPFVFRRYIDFSVIQSLRNMK GMIAREVRRRGLKDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLLPTLSAINALN LLPDTDAEQLRAAYLYLRRLENLLQSINDEQTQTLPGDELNRARLAWGMNVDDWQQLTDV LAGHMHNVRRVFNELIGDDEDETQEESLSEQWRELWQDALQEDDTTPVLTHLADDDRRRV LSLIADFRKELDKRTIGPRGRQVLDHLMPHLLSDVCSRDDASVPLSRITPLLVGIVTRTT YLELLSEFPGALKHLISLCAASPMVASQLARYPLLLDELLDPNTLYQPTATDAYRDELRQ YLLRVPEDDEEQQLEALRQFKQTQLLRIAAADIAGTLPVMKVSDHLTWLAEAIIDAVVQQ AWTQMVARYGQPTHLGDREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDVMTDGER EIDGRQFYLRLAQRIMHLFSTRTSSGILYEVDARLRPSGAAGMLVTSADAFADYQRNEAW TWEHQALVRARVVYGDPQLTSQFDAVRRDIMTLVRDGKTLQTEVREMREKMRSHLGNKHR DRFDIKADEGGITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMDEQEALAL TRAYTTLRDELHHLALQELPGHVMPERFDAERTLVRDSWQKWLVAE >gi|283548474|gb|GG730303.1| GENE 243 257469 - 258902 1891 477 aa, chain + ## HITS:1 COG:rfaE KEGG:ns NR:ns ## COG: rfaE COG2870 # Protein_GI_number: 16130948 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase # Organism: Escherichia coli K12 # 1 474 1 474 477 881 95.0 0 MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVDTIEERPGGAANVAMNI ASLGANSRLVGLTGIDDAARALSKTLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLD FEEGFEGVDPQPLHERINQALGSIGALVLSDYAKGALASVQQMIALARKAGVPVLIDPKG TDFERYRGATLLTPNLSEFEAVVGKCKSEEELVERGMKLIADFDLSSLLITRSEQGMTLL QPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACYFANAAAGVVVGKLGT STVSPIELENAVRGRADTGFGVMSEAELKQAVASARKRGEKVVMTNGVFDILHAGHVSYL ANARKLGDRLIVAVNSDASTKRLKGETRPVNPLEQRMIVLGALESVDWVVSFEEDTPQRL IAGILPDLLVKGGDYKPEDIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQKDSDK >gi|283548474|gb|GG730303.1| GENE 244 259006 - 260673 1982 555 aa, chain - ## HITS:1 COG:yqiK KEGG:ns NR:ns ## COG: yqiK COG2268 # Protein_GI_number: 16130947 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 1 554 1 553 553 763 93.0 0 MDDILGILPSWMFTAIIAVVVLLIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIV MPIFHEIIPINMNTLKLEVSRSTADSLITKDRMRVDVVVAFFVRVKPSTDGIATAAQTLG QRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELE SVSLTNFNQTAKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALS RKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEAERHREAEQTRILAERQIQETEIER EQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALAEAVR AQQNVETTRQTAEADRAKQVALIAAAQDAETQAVELTVRAKAEKDAAEMQAAAIVELAEA TRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQSLPAVIEKSVEPMKSIDGIKIIQ VDGLNRGGAVGEVTAGNVNGGNLAEQALSAALSYRTQAPLIDSLLNEIGLSGGSLQALAE PLKNSPQPVEKTAEE >gi|283548474|gb|GG730303.1| GENE 245 260703 - 261332 546 209 aa, chain - ## HITS:1 COG:no KEGG:ROD_35931 NR:ns ## KEGG: ROD_35931 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 209 1 209 209 354 81.0 1e-96 MILFADYNNPYLFAISFVLLIGLLEIISLIFGHFLSGALDAHLEHYDALTSGNLGQALHY LNIGRIPALIVLCLLAGFFGLFGILIQHGWVTLWQAPLSNLLLVPVSFILAVFAVHYSGR VIAPWLPRDETTAIAEDEFIGSMAVITGSSAISGTPCEGKFTDKFGQTHYVLLEPEAGKA FKKGDKVLIICRLSTTRYLAELNPWPNVL >gi|283548474|gb|GG730303.1| GENE 246 261601 - 261801 205 66 aa, chain + ## HITS:1 COG:no KEGG:CKO_04437 NR:ns ## KEGG: CKO_04437 # Name: not_defined # Def: glycogen synthesis protein GlgS # Organism: C.koseri # Pathway: not_defined # 2 66 5 69 69 115 86.0 7e-25 MNSTMYSMNNFDFLARSFARMQAEGHPVDIQAITGNMDEEHRSWFCKRYALYCQQATEAK KFELEH >gi|283548474|gb|GG730303.1| GENE 247 261835 - 262131 522 98 aa, chain - ## HITS:1 COG:STM3196 KEGG:ns NR:ns ## COG: STM3196 COG2960 # Protein_GI_number: 16766496 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 98 21 118 119 128 92.0 2e-30 MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQSQLTRLDLVSREEFDVQTQVLL RTREKLALLEQRLTELESREKTAEVKPAPAIPPVDPQE >gi|283548474|gb|GG730303.1| GENE 248 262520 - 263173 827 217 aa, chain + ## HITS:1 COG:STM3195 KEGG:ns NR:ns ## COG: STM3195 COG0108 # Protein_GI_number: 16766495 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Salmonella typhimurium LT2 # 1 217 1 217 217 406 98.0 1e-113 MNQTLLSSFGTPFERVEHALSALREGRGVMVLDDEDRENEGDMVFPAETMTVEQMALTIR HGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRA AIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDG TMARAPECIAFAGKHNMAVVTIEDLVAYRQAHERKAS >gi|283548474|gb|GG730303.1| GENE 249 263604 - 263780 184 58 aa, chain + ## HITS:1 COG:no KEGG:SPAB_03984 NR:ns ## KEGG: SPAB_03984 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 58 1 58 58 90 79.0 1e-17 MFIAWYWIVLIALVAVGYYCHMKRYCRAFRQDRDALLEARNKLFRRASEGDGSVREQK >gi|283548474|gb|GG730303.1| GENE 250 263846 - 264619 831 257 aa, chain - ## HITS:1 COG:STM3190 KEGG:ns NR:ns ## COG: STM3190 COG0428 # Protein_GI_number: 16766490 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Salmonella typhimurium LT2 # 1 257 1 257 257 381 94.0 1e-106 MSVPLLLTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALAAD GMSPVLGYGMFIVGLLGYFGLDRILPHAHPQDLVQKTTQPLPGSIRRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALAIALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMA EILGGVLAWLILGSLISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCG MSVMGLSLVILQSMGIG >gi|283548474|gb|GG730303.1| GENE 251 264767 - 265555 929 262 aa, chain + ## HITS:1 COG:ygiD KEGG:ns NR:ns ## COG: ygiD COG3384 # Protein_GI_number: 16130935 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 1 262 10 271 271 477 89.0 1e-134 MSSTRMPALFLGHGSPMNVLEDNVYTRAWQLLGETLPRPKAIVVVSAHWFTRGTGVTAME APKTIHDFGGFPQALYDTHYPAPGSPELAQHLVDLLSPVPVTLDREAWGFDHGSWGVLIK MYPNADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTARWHGENT PYPWATSFNDYVKANLTWQGPVEQHPLVNYLDHEGGSLSNPTPDHYLPLLYVLGAWDGKE PVTIPVDGIEMGSLSMLSVQVG >gi|283548474|gb|GG730303.1| GENE 252 265640 - 266725 1276 361 aa, chain - ## HITS:1 COG:ECs3926 KEGG:ns NR:ns ## COG: ECs3926 COG0754 # Protein_GI_number: 15833180 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Escherichia coli O157:H7 # 1 361 26 386 386 711 95.0 0 MYGEPYWCEDAYYKLTLAQVEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWGF VRQSWLTQQPSLYSRLDLAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLP EGSDQFNSLQEKLIERFTELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCAAEAEIATEF LYVEDIGLGEKGQFTDMQDQVIANLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIIS NKALLPLLWEMFPDHPNLLPAYFAENDYPQMEKFVVKPIFSREGANVSIIENGKTIEAVE GPYGEEGMIVQQFHQLPKFGDSYMLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIFV E >gi|283548474|gb|GG730303.1| GENE 253 266806 - 267483 574 225 aa, chain - ## HITS:1 COG:STM3187 KEGG:ns NR:ns ## COG: STM3187 COG5463 # Protein_GI_number: 16766487 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Salmonella typhimurium LT2 # 1 225 1 223 223 327 93.0 8e-90 MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGK SAECTTAFNNALKEAERTAPKYATREDCIAEFGEGQCQQAPAQAGMAPTGEGQAQAQNQS SGSFWMPLMAGYMMGRLMGGGMGAQQPLFSSKNPASPAYGKYTDASGKNYGAATPGRTMT VPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSASGTTTRSMGG >gi|283548474|gb|GG730303.1| GENE 254 267632 - 269107 1900 491 aa, chain - ## HITS:1 COG:STM3186 KEGG:ns NR:ns ## COG: STM3186 COG1538 # Protein_GI_number: 16766486 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 1 491 3 491 491 735 89.0 0 MKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPL LPQLGLGADYTYSNGYRDANGVNSNATSASLQLTQSIFDMSKWRALTLQEKSAGIQDVTY QTDQQTLILNTATAYFNVLNAIDVLSYTQAQKDAVYRQLDQTTQRFNVGLVAITDVQNAR SQYDTVLANEVTARNNLDNAVEQLRQVTGNYYPELASLNVDGFKTNKPQAVNALLKEAEN RNLTLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGVSDTSYNGSKTNNNAQYDDSNMG QNKIGLTFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISS INAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQQLANARYTYLINQLNV KSALGTLNEQDLVALNNTLGKPVSTTPDTIAPQNAQQDAAADGYTSNSPAPAAQPTAART TSSNGTNPFRN >gi|283548474|gb|GG730303.1| GENE 255 269313 - 269945 573 210 aa, chain + ## HITS:1 COG:ECs3922 KEGG:ns NR:ns ## COG: ECs3922 COG0494 # Protein_GI_number: 15833176 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Escherichia coli O157:H7 # 1 208 1 208 209 366 90.0 1e-101 MRKPDNLPMTFTKNDVEIIARETLYRGFFSLDLYRFRHRLFNGGMSGEVTREIFERGHAA VLLPFDPERDEVVLVEQIRIAAFDTSASPWLLEMVAGMIEEGESVEDVARREAMEEAGLN VKRVKPVLSYLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV EEGLIDNAASVIALQWLQLHYQELKTEWKK >gi|283548474|gb|GG730303.1| GENE 256 269942 - 270364 209 140 aa, chain + ## HITS:1 COG:STM3184 KEGG:ns NR:ns ## COG: STM3184 COG3151 # Protein_GI_number: 16766484 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 140 1 140 140 262 93.0 2e-70 MKRYTPDFPEMMRLCETNYSQLRRLLPRNDAAGETVSYQVANAQYRLTIVESTRYTTLVA IEQTAPAVTYWSLPSLTVRLYHDARVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQ FLADWLRYCLAHGAMAIPVY >gi|283548474|gb|GG730303.1| GENE 257 270389 - 271216 582 275 aa, chain + ## HITS:1 COG:STM3183 KEGG:ns NR:ns ## COG: STM3183 COG1409 # Protein_GI_number: 16766483 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Salmonella typhimurium LT2 # 1 275 1 275 275 489 90.0 1e-138 MESLLTLPLAGEARVRILQITDTHLFAEKHETLLGVNTWDSYQSVLDAIHAESPEYDLIV ATGDLAQDQSAAAYQHFAEGIASFRAPCVWLPGNHDFQPAMYSALQDAGISPAKRVFIGE QWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERNTLLLLHHHPLPAGCSWLDQHSL RNAAELDNVLVNYPRVKYLLCGHIHQELDLDWNGRRLLATPSTCVQFKPHCSNFTLDTIS PGWRTLELFADGTLQTQVCRLQGNRFHPDTASEGY >gi|283548474|gb|GG730303.1| GENE 258 271216 - 271797 463 193 aa, chain + ## HITS:1 COG:STM3182 KEGG:ns NR:ns ## COG: STM3182 COG3150 # Protein_GI_number: 16766482 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Salmonella typhimurium LT2 # 1 192 1 192 193 367 93.0 1e-102 MSTLLYLHGFNSSPRSAKACLLKSWLAENHPHVEMIVPQLPPYPAQAAEMLESIVLEHGG ESLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPYELLVDYLGQNENPYTGQQYVLESR HIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYASCRQTVTEGGNHAFTGFEDY FNQIVDFLGLHSF >gi|283548474|gb|GG730303.1| GENE 259 271826 - 273718 2259 630 aa, chain + ## HITS:1 COG:parE KEGG:ns NR:ns ## COG: parE COG0187 # Protein_GI_number: 16130926 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Escherichia coli K12 # 1 629 1 629 630 1272 97.0 0 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN ALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS VSRLTHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLSEAVNGLPTLPEKPFIG NFSGETETVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQ NVQSAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL RYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRIDLGKEVYYALT EEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLIIDDEDDQRTN AVMDMLLAKKRSEDRRNWLQEKGDLADLEG >gi|283548474|gb|GG730303.1| GENE 260 273816 - 274667 823 283 aa, chain - ## HITS:1 COG:lin2118 KEGG:ns NR:ns ## COG: lin2118 COG4753 # Protein_GI_number: 16801184 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain # Organism: Listeria innocua # 175 282 387 494 494 73 36.0 3e-13 MTLSSPQEHLELIALNDAIASFSRLFANTVRYHHWHQCLEVLYVEEGFGVVTVDHKQFTM RPGRMFFFPPFTLHKIWVDEQARDGYRRTIIHLDQHAVLKVLRDFPHTQQHLQNLSARGS AAWVVDAADIHAHVDFLFSRYEKMAAQKPLNTEQVACLLVNLFSLLPEDNGNMPEINSGI ASQVMFWLDEHYTHKFSLAALAQELGKSKSYVSRRFQMETGESILDYLNTLRLRKACEAL LHSEISVREVAQKVGFSEVTYFISAFGKGIGETPLQYRKRHKL >gi|283548474|gb|GG730303.1| GENE 261 274833 - 276653 1511 606 aa, chain + ## HITS:1 COG:SMb20536 KEGG:ns NR:ns ## COG: SMb20536 COG4289 # Protein_GI_number: 16264263 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 3 572 7 575 617 436 41.0 1e-122 MWSATEEKSNPLSSREDVTCAVNAILRALDPQFPAGQAQFSLGNTCAHYSVDIACMEGLS RALWGLFPLMAGGADTPYAEKYIQAIKLGTDPQSPHYWGDTGPYDQRLVEMAAYGLGLAL LQTQLTDCFSLRERENLHRWLNQITDAQMPDSNWNYFAIIVQLGFKRAGLPYDQAAIDRR FELMEAYYLGDGWYSDGPGRPKDYYISMAFHFYGLLYATLSPDDAERAATLRERSRLFAE DFIYLSAADGASVPFGRSLTYRFAMVAFWSAVAFAELDVFSPGVIKGVILRHLRWWQKQP IFDRDGILTLGFAYPNLAMCEDYNSPGSPYWALKVFLILALPETHPFWQAKEQALPVPGE KRVITHAAQIMQHSEHSEHVTMLTSGQLELNNYVNTEAKYTKFAYSSRFGFTIERGRYGI KHAACDSMLLLADGDGYYRGRRQCDDVRVDENFIWSRWSPWHDVTLETWLVPFGEWHLRL HHIHSARTLQTVEGGFAVMKADPQLRERGCLLAARNGTSVIVDLSPSIVRQPDSVVTPPN SSIMFPECASIPVLTAEIPQGESWLCCAVSASGQQRQYASVPLLSINNSQVVIQQPESAR QLSFFL >gi|283548474|gb|GG730303.1| GENE 262 276664 - 277932 1110 422 aa, chain + ## HITS:1 COG:lacY KEGG:ns NR:ns ## COG: lacY COG0477 # Protein_GI_number: 16128328 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli K12 # 35 402 32 402 417 231 36.0 2e-60 MKNSSTGNRTEYYKISSFIFLYFFTWSASIGLLAIWLGQKAQLSGTVIGTVFAVNGIFSV ILKPVYGYILDKIGMSKYLLYFVVVMSALMAPFFIYVYQPLLLSNTMLGIIIGAIYLSFA WYAGVAACESYSDRYSRLNGMEFGQIRMWGSLGWAVASSFSGLLFNLSPAYNFMLGSVAS VVMLVVLLTLKVNVNAANASEVLTKEKIAPADVYALLRNRKFWAFCLYVAGVAWMMFIAE QQFSRYFVTFFSDVHEGNAVFGYLGTVQSGMEFVMYMVIPLFVNYVGAKRGLLIVGALVG ARLVISGLCDSHLLISVLKPLYGLEICLLLVSVFKYIAEHFDKRVNATMYLLGYQAMLYV GNVVVSSPAGLLYDRIGFEKTYIIMGIVALIFTLISAFTLSACQSKRRNNIALDIAENNP AK >gi|283548474|gb|GG730303.1| GENE 263 277956 - 279146 1204 396 aa, chain + ## HITS:1 COG:no KEGG:CKO_04418 NR:ns ## KEGG: CKO_04418 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 396 1 396 396 767 92.0 0 MLNHIVEESLRAFPGSPVNPGSFQDQMSSARKHVLELISRHLTEFGEQFPAETCVQGFYP LTENVEWTTSFWTGQLWLAWEMSGESKFREMAEKHVRSFGLRIAGRHDTNTHDLGFLYTL SCVAAWRLTGNRDARGFSLMAAEALLERFHEKAQIIQAWGDLRDPEQAGRMIIDCNMNLP LLYWASEQTGDPRFALAAKAHVAQAAKYLIRQDASTFHTYYMDVQTGAPRYGNTQQGYAD DSCWSRGQAWGIYGFLLSYIYTGDTRMVQLSKKLANYFLNRLPEDAVCHWDLALVGTDAL RDSSSAAIAVCGLLELIKHLPVTDPDRERYQQWAMGIMSSLTRHYLMGKDEQGNGLLKHS VYHLSSNKGVDECASWGDYFYVEALMRFTQSWKLYW >gi|283548474|gb|GG730303.1| GENE 264 279229 - 279543 418 104 aa, chain - ## HITS:1 COG:STM3180 KEGG:ns NR:ns ## COG: STM3180 COG1359 # Protein_GI_number: 16766480 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 104 1 104 104 187 93.0 6e-48 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLQEEGCHGYAPMVDHAAGVSFQTTAPDSI VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILESGI >gi|283548474|gb|GG730303.1| GENE 265 279574 - 280155 704 193 aa, chain - ## HITS:1 COG:ECs3910 KEGG:ns NR:ns ## COG: ECs3910 COG2249 # Protein_GI_number: 15833164 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Escherichia coli O157:H7 # 1 193 1 193 193 374 92.0 1e-104 MSNILIINGAKKFGHSNGQLNDTLTEVADGILRDLGHDVRVVRADSDYDVQAEVQNFVWA DAVIWQMPGWWMGAPWTVKKYIDDVFTAGHGTLYASDGRTRSDASKKYGSGGLIQGKKYM LSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEALPTFITNDVIKMPDVPRY IAEYRKHLNEIFG >gi|283548474|gb|GG730303.1| GENE 266 280265 - 281563 1185 432 aa, chain - ## HITS:1 COG:ZygiY KEGG:ns NR:ns ## COG: ZygiY COG0642 # Protein_GI_number: 15803568 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 EDL933 # 1 432 18 449 449 657 76.0 0 MILVLVTWLISSFVAWKQTTDNVNEMFDTQQMLFAKRLVTLDLDELKASERIAHTPKKFK HGHIDDDVLTFAAYTPEGKMVLHDGDNGQYIPYSYRREGFDDGYLNGDNDKWRFVWLTSA DKKYRIVVGQEWEYREDMALAIVTAQLVPWLVALPLMLLILIVLLSLELKPLKKLAQALR LRDPESEEPLSLKGIPGEVRPLVESLNQLFTRIHTTMVRERRFTSDAAHELRSPLTALKV QTEVAQLSDDDPQARQKALMQMQAGIDRATRLVDQLLTLSRLDSLDNLQDVAKISLEELL QSSVMDIYHSAQQAHIDVRLQINAHGITCTGQPLLLSLMVRNLLDNAIRYSPRGSIVEVT LNARNFSVKDNGPGIAPEVLTHIGERFYRPPGQSVTGSGLGLSIVRRIATLHRMSASFGN APEGGFEAKIGW >gi|283548474|gb|GG730303.1| GENE 267 281611 - 282270 814 219 aa, chain - ## HITS:1 COG:STM3177 KEGG:ns NR:ns ## COG: STM3177 COG0745 # Protein_GI_number: 16766477 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 219 1 219 219 393 91.0 1e-109 MRILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS GQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT WDENVSSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGDA >gi|283548474|gb|GG730303.1| GENE 268 282422 - 282817 532 131 aa, chain + ## HITS:1 COG:STM3176 KEGG:ns NR:ns ## COG: STM3176 COG3111 # Protein_GI_number: 16766476 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 129 1 128 130 214 90.0 3e-56 MKKLAAIVAVMALCSAPVLAAQQGGFSGPTTTTQSQSGGFVGPNGSSTTVASAKSLRDDT WVTLRGNIVERISDDLYVFKDATGTVNVDIDHKRWNGVTVTPQDVVEIQGEVDKDWNSVE IDVKQISKVAK >gi|283548474|gb|GG730303.1| GENE 269 282936 - 285194 2598 752 aa, chain + ## HITS:1 COG:STM3174 KEGG:ns NR:ns ## COG: STM3174 COG0188 # Protein_GI_number: 16766474 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Salmonella typhimurium LT2 # 1 752 1 752 752 1413 95.0 0 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY TESRLSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR MRAVWTKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAEAILEL KLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADAEAYGDDRRSPL QEREEAKAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAVKGKSN QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMENDDRKLLMASDA GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMFPVSDL PQLSKGKGNKIINIPSAEAAKGEDSLALLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGE RGRRGTLMRGLQRIDRIEIDSPRRASHGDSEE >gi|283548474|gb|GG730303.1| GENE 270 285390 - 286127 567 245 aa, chain + ## HITS:1 COG:STM3173 KEGG:ns NR:ns ## COG: STM3173 COG0204 # Protein_GI_number: 16766473 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Salmonella typhimurium LT2 # 1 245 1 245 245 484 92.0 1e-137 MLYIFRLIITVIYCILVCIFGCIYCLFSPRNPKHVATFGHMFGRLAPLYGLKVECRMPAD AQNYGNAIYICNHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNN RAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAAGVPVIPVCVS TTSNKIKLNRLNNGLAIVEMLPPVDISHFGKDQVRELAAHCRTLMEQKIAELDKEVAERE AAGKV >gi|283548474|gb|GG730303.1| GENE 271 286199 - 287611 1310 470 aa, chain + ## HITS:1 COG:STM3172 KEGG:ns NR:ns ## COG: STM3172 COG2132 # Protein_GI_number: 16766472 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Salmonella typhimurium LT2 # 1 469 1 469 470 898 94.0 0 MSFSRRQFIQASGIALCAGAVPLKANAAGQQQPLPVPPLLESRRGQPLFMTLQRAHWSFT QGTRAPVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMM SPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLSIPNHYGVD DFPIIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQSPYVEVSRGWVRLRLLNASNSR RYQLQMSDGRALHVISSDQGFLPAPVSLKQLSLAPGERREILVDMTNGNEVSITCGEAAS IVDRIRGFFEPSSILISTLVLTLRPTGLLPLVTDSLPMRLLPTEILSGSPIRSRDISLDD DPGINGQLWDVNRMDITAQQGTWERWMVRADMPQSFHIEGVSFLIRNVNGAMPFPEDRGW KDTVWVDGQVELLVYYGQPSWAHFPFYFNSQTLEMADRGSIGQILVNPAP >gi|283548474|gb|GG730303.1| GENE 272 287800 - 289971 2476 723 aa, chain + ## HITS:1 COG:STM3168 KEGG:ns NR:ns ## COG: STM3168 COG1032 # Protein_GI_number: 16766468 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Salmonella typhimurium LT2 # 1 723 1 723 723 1467 96.0 0 MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSRDEMDQLGWDSCDIILVTGDAYVDHPS FGMAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRR LRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVR RSVLVDAKADMLMFGNGERPLVEVAHRLAMGETIDQIRDVRNTAIMVKEALPGWSGVDST RLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAVTVQPPRPKPWEKTYVLLPSFEKV KGDKVLYAHASRILHHETNPGCARALMQKHGDRYIWINPPAIPLSTEEMDSVFALPYKRV PHPAYGNSRIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD TVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPDICPHMDTNHEPTINLYRR ARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQRRFRLDQVQNFY PSPLANSTTMYYTGKNPLGKIGYKSEDVVVPKGDKQRRLHKALLRYHDPANWPLIRQALE EMGKKHLIGGRRECLVPAPTLEEMREARRQNRHTRPALTKHTPVAHQRQTPAANKKRGKA AGR >gi|283548474|gb|GG730303.1| GENE 273 290074 - 290529 444 151 aa, chain - ## HITS:1 COG:STM3167 KEGG:ns NR:ns ## COG: STM3167 COG0537 # Protein_GI_number: 16766467 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Salmonella typhimurium LT2 # 1 151 1 151 151 306 99.0 8e-84 MTCIFCQIVEGKAPCHKVWEDEHHLAFLSIFPNTDGFTVVIPKKHYPSYAFDLPPQALAD LMLATQKVAKKLDNAFPDVSRTGMFFEGFGVDHVHSKLSPMHGTGDLTHWKPIESRQNKF FEQYEGYLSSHDHERADDEKLAALAARIREA >gi|283548474|gb|GG730303.1| GENE 274 290573 - 292027 1689 484 aa, chain - ## HITS:1 COG:STM3166 KEGG:ns NR:ns ## COG: STM3166 COG0471 # Protein_GI_number: 16766466 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Salmonella typhimurium LT2 # 4 484 14 494 494 806 93.0 0 MAEKKQQGVKWFPLILILFISAGLWQLTPPTGLSVPAWHSAIIFVATIASIVAKVLPIGA VGIIGITVFALAYAAGDKTASGAITTALSELNSSLIWLIVVAFMIARGFIKTGLGRRIAL QMIRLLGKRTLGLAYGLAFADLILSPAMPSNTARCGGVIYPIADSLARSFHSNPEDESRS KIGTFLITCIGNVNDVTAALFMTGYTGNLLAVKLAANAGVTLTWGGWFMAALLPCLVSLL LVPLLVYWLVRPEIKHTPDAPNLARKELAEMGRMSRGEWLMLATVGVLLVLWIFGDTLGV DATTASFVGLSILLLSGVLSWEDVKSEKGAWDTLIWFAALLMMANQLKKLGFTTWFGNLI GDSLSCTMHGTSWVIVLLLLNAAYFYTHYFFASGNAQIAALYAVFLGVGLHLNIPAAPTA LMLAFTSSLYCSLTQYTHARGPILFGAGYVPTGVWWRTGFIISLFNQAVFITVGLLWWKV LGLY >gi|283548474|gb|GG730303.1| GENE 275 292216 - 293043 845 275 aa, chain - ## HITS:1 COG:STM3165 KEGG:ns NR:ns ## COG: STM3165 COG0656 # Protein_GI_number: 16766465 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Salmonella typhimurium LT2 # 1 275 1 275 275 474 88.0 1e-134 MTGPTIIKLQDGNVMPQLGLGVWKASNEEVITAIHKALEVGYRSIDTAAAYKNEEGVGKA IRDADVPREELFITTKLWNDDQKRPREALLESMEKLQLDYLDLYLMHWPVPAIDHYVEAW ENMIDLHKEGLIKSIGVCNFQINHLQRLMDETGVPPVINQIELHPLMQQRQLHAWNATHK IQTESWSPLAQGGKDVFDQKIIRDLAEKYGKSPAQIVIRWHLDNGLVVIPKSVTPARIAE NFNVWDFRLDKEELGEIAKLDQGKRLGPDPDQFGG >gi|283548474|gb|GG730303.1| GENE 276 293147 - 294310 1643 387 aa, chain - ## HITS:1 COG:STM3164 KEGG:ns NR:ns ## COG: STM3164 COG1979 # Protein_GI_number: 16766464 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Salmonella typhimurium LT2 # 1 387 1 387 387 708 90.0 0 MNNFNLHTPTRILFGKGAIAKLRDQIPQDARVLVTYGGGSVKKTGVLAQVQDALKGLDVL EFGGIEPNPSYETLMNAVKIVRDENVTFLLAVGGGSVLDGTKFIAAAAQYADGIDPWRIL ETHGNDVTSAIPMGSVLTLPATGSESNSGAVISRKTTGDKLAFMTPFVQPVFAVLDPVYT YTLPPRQVANGVVDAFVHTVEQYVTYPVDGKIQDRFAEGILLTLIEEGPKALQEPENYNV RANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTK RAKLLQYAERIWNITEGSDDQRIDAAIAATRQFFEQMGVPTRLSDYGLDGSSIPALLEKL QAHGGTKLGEHQDITLDVSRRIYEAAR >gi|283548474|gb|GG730303.1| GENE 277 294487 - 295404 548 305 aa, chain + ## HITS:1 COG:yqhC KEGG:ns NR:ns ## COG: yqhC COG2207 # Protein_GI_number: 16130908 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Escherichia coli K12 # 7 305 77 375 375 531 87.0 1e-151 MMKWCAMNREEICLLLTNKIKQLKNNENKLSELLPDVRLLHGTVPAARTPVMYQPGIIFL FSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATPEIPLAGIYLNVDMLQLQELLMD IGEDELFQPVMAASGINSATLSDEILCAAERLLDVMERPLDARILGKQIIREILYHVLTG PRGGALLSLVSRQTHFSLISRVLKRIETKYTENLNVEQLAAEANMSVSAFHHNFKAVTST SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRFFGVTPGEDAARIR MIQGS >gi|283548474|gb|GG730303.1| GENE 278 295495 - 296154 694 219 aa, chain - ## HITS:1 COG:ECs3893 KEGG:ns NR:ns ## COG: ECs3893 COG0586 # Protein_GI_number: 15833147 # Func_class: S Function unknown # Function: Uncharacterized membrane-associated protein # Organism: Escherichia coli O157:H7 # 1 219 1 219 219 363 93.0 1e-100 MVVIQDIVSALWQHDFAALADPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGAL IAQDVMSFLPTIAILTAAASLGCWLSYIQGRWLGNTRTVKGWLAQLPEKYHQRATCMFDQ HGLMALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVTVVTSFGYALSMIPF VKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYSSA >gi|283548474|gb|GG730303.1| GENE 279 296286 - 297473 1243 395 aa, chain - ## HITS:1 COG:metC KEGG:ns NR:ns ## COG: metC COG0626 # Protein_GI_number: 16130906 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Escherichia coli K12 # 1 394 1 394 395 746 89.0 0 MADKQLETTLVHAGRSKKYTLGSVNSVIQRASSLVFDSVEAKKQATHNRANGALFYGRRG TLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQGDHVLMTNTAYEPSQDFCTK ILGKLGVSTGWFDPLIGADIVKHIQPNTKVVFLESPGSVTMEVHDVPAIVAAVRSVAPDA VIMIDNTWAAGMLFKALDFGIDISIQAGTKYLIGHSDGMVGTAVSNARCWDQLRENAYLM GQMLDADTAYMTSRGLRTLSVRLRQHHESSLKVAEWLAGHPQVARVNHPALPGSKGHEFW KRDFTGSSGLFSFVLNKKLNHEELSAYLDHFSLFSMAYSWGGFESLILANQPEHIAAIRP QGEVDFSGTLIRLHIGLENVDDLIADLAAGFARIE >gi|283548474|gb|GG730303.1| GENE 280 297739 - 298458 936 239 aa, chain + ## HITS:1 COG:STM3159 KEGG:ns NR:ns ## COG: STM3159 COG0811 # Protein_GI_number: 16766459 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Salmonella typhimurium LT2 # 1 239 6 244 244 408 93.0 1e-114 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSLEFFTQKRRLKRELQLLADA RSLEGASEIAAGFDAKSLGAQLINEAQNELELSEGSDDNEGIKERTGFRLERRVAAVGRH MGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGL VAAIPAVVIYNVFARQIGSYKAMLGDVAAQVLLLQSRDLDLNASASAHPVRAAQKLRVG >gi|283548474|gb|GG730303.1| GENE 281 298465 - 298890 589 141 aa, chain + ## HITS:1 COG:ECs3889 KEGG:ns NR:ns ## COG: ECs3889 COG0848 # Protein_GI_number: 15833143 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport protein # Organism: Escherichia coli O157:H7 # 1 141 1 141 141 235 92.0 2e-62 MAMSFNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRP EKPVYLSVKADKSMFIGNNQVTDETMISELNTLTEGKKDTTIFFRADKTVDYETMMKVMD TLHQAGFLKIGLVGEETAKAK >gi|283548474|gb|GG730303.1| GENE 282 298964 - 299371 428 135 aa, chain - ## HITS:1 COG:no KEGG:CKO_04399 NR:ns ## KEGG: CKO_04399 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 135 1 135 140 186 79.0 2e-46 MKDVEDNNVYLALDDHKSDEFVLKQNLAILIANKNATLESVAQEIVSIPAALVRMKWQNR REIYALQAKEEIYGAAIEALMAQKPELRDKIIARLESTYQYILARETATLRLTRKLSEGN YEPTRITAVALDENR >gi|283548474|gb|GG730303.1| GENE 283 299358 - 299777 210 139 aa, chain - ## HITS:1 COG:no KEGG:CKO_04398 NR:ns ## KEGG: CKO_04398 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 134 1 134 134 182 71.0 4e-45 MLPEHLVPAHYHLSNSATQTNSTENSENLTQGKRTLSDYEADILISATATGQARNMLFEE SDRHLKERLFRAAKIESFTRLLNSLQAEGDINAQELSKILSAKTAIINEQGNKIWLNLIT RETNAPIFYSLEEKENERC >gi|283548474|gb|GG730303.1| GENE 284 299880 - 300383 279 167 aa, chain + ## HITS:1 COG:no KEGG:SeHA_C3402 NR:ns ## KEGG: SeHA_C3402 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Heidelberg # Pathway: not_defined # 1 167 1 167 167 283 81.0 1e-75 MNSIFYSVITLLLLTCGVLLLMRSANKNRYTEKGNAEHQPEILSKEEGEDHFSVLMNSIT PVWYWRVNHEYIDFIHSTIKRMTMVELNETPGLFDAQRRCSDLNSAVYKYYDNIKKRCLS GEKVPHADLDVLNLRQCFREFSLEAYPALVALVWPEYQRPQIKAEEV >gi|283548474|gb|GG730303.1| GENE 285 300440 - 301480 1356 346 aa, chain - ## HITS:1 COG:yghZ KEGG:ns NR:ns ## COG: yghZ COG0667 # Protein_GI_number: 16130899 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Escherichia coli K12 # 1 346 1 346 346 634 91.0 0 MAWFANPERYEQMLYRYCGRSGLRLPALSLGLWHSFGHVQALESQRALLRKAFDLGITHF DLANNYGPPPGSAEENFGRLLREDFAQYRDELIISTKAGYDMWPGPYGSGGSRKYLLASL DQSLKRMGLDYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMAE LLREWKIPLLIHQPSYNLLNRWVDSSGLLDTLEANGMGCIAFTPLAQGLLTGKYLNGIPE GSRMQREGKKVRGLTENMLTPENLNSLRLLNEMAQQRGQSMAQMALSWLLKDSRVTSVLI GASRPEQLEENVQALANLTFSAEELAQIDKHVADGELNLWQASSDK >gi|283548474|gb|GG730303.1| GENE 286 301963 - 303603 1352 546 aa, chain + ## HITS:1 COG:STM3152 KEGG:ns NR:ns ## COG: STM3152 COG0840 # Protein_GI_number: 16766452 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 1 546 1 547 547 771 82.0 0 MRLLKNFTIRIVMLAILGLFCLLWSGVGLFSLHSLTKISEGNDIDRHLVHQMTVLSQGND QYFRFVTRLSRAMDVKMSGGTPDFAPAQQSLENMSKKLQEMKTLSPGPMDPEVAAAVLAK WQALLDNGVIPQMQLAQQGTLTAFAEHASTVTPALSREFGASAERFNATAGERLDTTRVM VDGKTSIIRTLIITAVILGIALLFFTDRYLVAMMVKPLGRIRQQFQQIAQGDLSHPIEDF GRNCVGQLVPLLCAMQDSLREAVSTIRSGSDNIWRGATEISTGNNDLSSRTEEQAAALEE TAASMEQLTATVKLNAENAREASQLADTATETAGKGSSLVSEVVETMDGIAASSKQIAEI TSVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAGAAKEIETLIGES SRRVDQGARLVKETGLTMEAILRGATEVTTIMKQIASASEEQNKGISQVSVAITQMDSVT QQNAALVEQVSAAAVALERQTEELQRSVQQFRLSANDVQYAATHTASPSAERKTSAAAKT DEWVSF >gi|283548474|gb|GG730303.1| GENE 287 303689 - 303976 233 95 aa, chain + ## HITS:1 COG:no KEGG:EFER_2941 NR:ns ## KEGG: EFER_2941 # Name: yghW # Def: hypothetical protein # Organism: E.fergusonii # Pathway: not_defined # 1 94 40 133 134 170 88.0 2e-41 MDNHFGKGLMAGLNASSADSARSVANFCADYKRGFVLGFSHRMFEKTGDRQLSAWEAGIL TRRYGLDKEMVMDFFKENQSSTTIRFFMAGYRLEA >gi|283548474|gb|GG730303.1| GENE 288 304167 - 305285 940 372 aa, chain + ## HITS:1 COG:ECs3882 KEGG:ns NR:ns ## COG: ECs3882 COG1740 # Protein_GI_number: 15833136 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I small subunit # Organism: Escherichia coli O157:H7 # 1 372 1 372 372 681 96.0 0 MTGDNSLINSSGINRRDFMKLCAALAATMGLSSKAAAEMAESVSRPQRPPVIWIGAQECT GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS IPLKDNGIYCMVAGEPIVDHIRRAAEGAAAIIAIGSCAAWGGVAAAGVNPTGAVGLQEVL PGKTIINIPGCPPNPHNFLATVAHIITYGKPPKLDTKNRPTFAYGRLIHEHCERRPHFDA GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGV GFHKGIHQLAHVENQTPRSEKPDVNMKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR QQKKDNADSRGE >gi|283548474|gb|GG730303.1| GENE 289 305288 - 306274 864 328 aa, chain + ## HITS:1 COG:ECs3881 KEGG:ns NR:ns ## COG: ECs3881 COG0437 # Protein_GI_number: 15833135 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Escherichia coli O157:H7 # 1 328 1 328 328 651 95.0 0 MNRRNFIKAASSGALLLGAAPSISHAAAENRPPIPGSLGMLYDSTLCVGCQACVTKCQDI NFPARNPEGEQTWSNNDKLSPYTNNIIQVWRSGTGVNKDQEENGYAYIKKQCMHCVDPNC VSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQK GVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLALKPGSEYHYPRQTVKAGDTYL HTVPKYYPHLYGEKEGGGTQVMVLTGVPYEDLDLPKLDDLSTGARSEHVQHSLYKGMILP LAALAGLTVLVRRNTKNDHHDGGDDHES >gi|283548474|gb|GG730303.1| GENE 290 306264 - 307442 1372 392 aa, chain + ## HITS:1 COG:STM3148 KEGG:ns NR:ns ## COG: STM3148 COG5557 # Protein_GI_number: 16766448 # Func_class: C Energy production and conversion # Function: Polysulphide reductase # Organism: Salmonella typhimurium LT2 # 1 392 1 392 392 714 97.0 0 MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLL IGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFY IPGHFNVNSVLFETAVCMTIYIGIMALEFAPALFERLGWKVSLKRLNKVMFFIIALGALL PTMHQSSMGSLMISAGYKVHPLWQAYEMLPLFSVLTAFIMGFSIVIFEGSLVQAGLKGNG PDEKSLFIKLTNTISVLLAIFVVLRFGELIYRDKLSYAFAGDLYSVMFWIEVVLMVFPLV VLRVTKLRNDSRMLYLSALSALLGCATWRLSYSLVAFNPGGGYHYFPTWEELLISIGFVA IEICAYIVLIRLLPILPPLKQNDQNRHEASKA >gi|283548474|gb|GG730303.1| GENE 291 307439 - 309142 2022 567 aa, chain + ## HITS:1 COG:STM3147 KEGG:ns NR:ns ## COG: STM3147 COG0374 # Protein_GI_number: 16766447 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase I large subunit # Organism: Salmonella typhimurium LT2 # 1 567 1 567 567 1135 94.0 0 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI CGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT SALKADPAKASAMLNGVSSWHLNSAEEFTKVQNKIKDLVASGQLGIFANGCWGHPAMQLP PEVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNLAVGGVANPINLDGIGTLNLERL MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLERGQGAVNYLSAPEFPTDGKNGSFLFP GGYITNEDLSTYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTVPDYTGWSEDG KYSWVKAPTFYGKTVEVGPLANMLCKLAAKRESTHAKLNEIIAIYTKLTGKTIEVSQLHS TLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDHTTFVKPDIPATGEFKGVGFLEAPRG MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDEVGPYERSLVGTPIADPNKPLEVVRTI HSFDPCMSCAVHVVDVDGNEVVSVKVL >gi|283548474|gb|GG730303.1| GENE 292 309142 - 309636 425 164 aa, chain + ## HITS:1 COG:ECs3878 KEGG:ns NR:ns ## COG: ECs3878 COG0680 # Protein_GI_number: 15833132 # Func_class: C Energy production and conversion # Function: Ni,Fe-hydrogenase maturation factor # Organism: Escherichia coli O157:H7 # 1 163 1 163 164 280 95.0 1e-75 MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDFVDVLDGGTAGMELLGDMANRDHLII ADAIVSKKSTPGTMMVLRDEEIPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI PESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEALPREAAHV >gi|283548474|gb|GG730303.1| GENE 293 309629 - 310117 431 162 aa, chain + ## HITS:1 COG:no KEGG:APECO1_3430 NR:ns ## KEGG: APECO1_3430 # Name: hybE # Def: hydrogenase 2-specific chaperone # Organism: E.coli_APEC # Pathway: not_defined # 1 162 1 162 162 284 82.0 1e-75 MSEEFVGFQTAPKTQIQAAFEEVARRSMHDLSFLHPNMPVYVSDFTLFEGQWTGCVITPW MLSALIFPGPDQLWPVRKISEKIGLRLPYGEMTFTVGELEGVSQYLSCSLMSPLSHSMSA QEGVRLADDCARMLLSLPVSDPNAPQLNRRALLLGRRNCENA >gi|283548474|gb|GG730303.1| GENE 294 310110 - 310451 225 113 aa, chain + ## HITS:1 COG:STM3144 KEGG:ns NR:ns ## COG: STM3144 COG0375 # Protein_GI_number: 16766444 # Func_class: R General function prediction only # Function: Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) # Organism: Salmonella typhimurium LT2 # 1 113 1 113 113 189 90.0 1e-48 MHELSLCQSAVEIVQQQAEQHGVKRVTGVWLEIGALSCVEESAVRFSFDIVCQGTLAQGC ELHIDYKPAQAWCWDCSQVVEVTQHDAQCPLCQGDRLRVDAGDSLKVKSIEVE >gi|283548474|gb|GG730303.1| GENE 295 310482 - 310730 278 82 aa, chain + ## HITS:1 COG:STM3143 KEGG:ns NR:ns ## COG: STM3143 COG0298 # Protein_GI_number: 16766443 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Hydrogenase maturation factor # Organism: Salmonella typhimurium LT2 # 1 82 1 82 82 143 92.0 7e-35 MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGDTAELVGQWVLVHVGFAMSII DEDEAKATLDALRRMEYDVTSA >gi|283548474|gb|GG730303.1| GENE 296 310819 - 311685 995 288 aa, chain - ## HITS:1 COG:ECs3874 KEGG:ns NR:ns ## COG: ECs3874 COG0625 # Protein_GI_number: 15833128 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione S-transferase # Organism: Escherichia coli O157:H7 # 1 288 17 304 304 565 92.0 1e-161 MSDNTYQPAKVWTWEKSNGGAFANINRPVSGATHEKTLPVGKHPLQLYSLGTPNGQKVTI MLEELLAQGVKGAEYDAWIIRIGDGDQFSSGFVEVNPNSKIPALRDCSQNPPVRVFESGA ILLYLAEKYGYFLPQDLAKRTETLNWLFWLQGAAPFLGGGFGHFYNYAPVKIEYAINRFT MEAKRLLDVLDKQLAQHQFVAGDEYTIADMAVWPWFGNVVLGNVYDAAEFLDAGSYKHVQ RWAKEIAARPAVKRGRIVNRTNGPLNEQLHERHDASDFDTNTEDKRQG >gi|283548474|gb|GG730303.1| GENE 297 311904 - 314192 1742 762 aa, chain + ## HITS:1 COG:ECs2106 KEGG:ns NR:ns ## COG: ECs2106 COG0243 # Protein_GI_number: 15831360 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Escherichia coli O157:H7 # 8 759 5 755 759 902 58.0 0 MKKGVPGVSGYQGPAGGWGAVKAVTASMFSQKAVARDIIAMFKMNQVKGFDCPGCAWPDP GHRAPMELCENGVKAVSWETTSKKASPEFFSRHPVSTLWHYSDYELENIGRLTHPMKYDA ASDTWQAVDWDIAFQEIGERLRSYDSAEQVEFYTSGRTSNEAAFLYQLFAREYGSSNFPD CSNMCHGPTSAGLTSAIGLGKGTVELDDFDHCDLVICIGHNPGTNHPRMLTTLRDVAKRG AKIISINPLNERGLERFSFPQSPKEMFTGQATELSNDYYQVKMGGDASLLKGIMKALIEM DEARIILDQPSTLDHAFIEEHTAGYAALYDDLRQHNWAELEQDSGLTRSQMEDLAHSYSK STATIICYGLGITQHKNGTGNVQQLVNLLLLKGNIGKPGAGICPLRGHSNVQGDRSVGIN EAASEDFLQRLEAHFSIRVPRTHGRSSVESIRAIERGDAKALICMGGNLAVAMPQPQRTF AAMKNLDLQVHVATKLNRSHLLLAKHNYLLPALGRTERDIQATGIQSVTVEDSMSMVHAS CGALKPASRWLKSEPAIVAGMARATLPLSPINWEALTADYALIRDAIEAVIPAFHDYNAR ITEPGGFRMDTPASRREWRTTSGKANFIVSHQRAVQRENQPADALVLATLRSHDQYNTTI YGMNDRYRGITGRRDVVFLSAEEAAARGLSQGDVVNVQALDDNGQPCADRIMYGLTVVIY NMAAGSIGAYLPEANILLSLDAVDTQSLTPAYKSVPVTLTKA >gi|283548474|gb|GG730303.1| GENE 298 314346 - 316208 2018 620 aa, chain + ## HITS:1 COG:STM3139_2 KEGG:ns NR:ns ## COG: STM3139_2 COG0754 # Protein_GI_number: 16766439 # Func_class: E Amino acid transport and metabolism # Function: Glutathionylspermidine synthase # Organism: Salmonella typhimurium LT2 # 233 618 1 386 387 770 93.0 0 MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPRDYDDDAAFRSYIDDEYMGHKWQCV EFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIW QKGGEFKDTGHVAVVTQLLENKIRIAEQNVLHTPLPPGQQWTRELEMVVENGCYTLRDTF DDTTILGWMIQTDDTRDSLPQPEIANDSLKIGGARLEDNGQFAGKWLDEQDPLQKAYVLA NGHVINQDPHQYFTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR LRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAERGYTGQGHN PAEGLLNELAGAWKHSRARPFVHIMQDKDIEENYHAQFMQQALRQAGFDSKILRGLDELR WDDAGQLIDGDCRLVNCVWKTWAWETAIEQVREVSETEYAAVPIRTGHTNQEVRLIDVLL RPEVLVFEPLWTVIPGNKAILPILWQLFPHHRYLLDTDFTVNEELAQTGYAVKPIAGRCG SNIDLVSHEEELLDKTSGKFAEQKNIYQQLWCLPKVAGKYIQVCTFTVGGNYGGTCLRGD ESLVIKKESDIEPLIVVQEA >gi|283548474|gb|GG730303.1| GENE 299 316414 - 316536 67 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTYKQPQQRYGIQGRSTVIVWLQIAYIGESISVAGLNGYV >gi|283548474|gb|GG730303.1| GENE 300 316488 - 316718 102 76 aa, chain - ## HITS:1 COG:ZrhsC KEGG:ns NR:ns ## COG: ZrhsC COG3209 # Protein_GI_number: 15800401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Escherichia coli O157:H7 EDL933 # 10 73 1178 1243 1397 92 69.0 1e-19 MSRSLVLINNEESPEEQLIRLPGQQYDEESGLYYNRHRYYTPGPGRYITQNPIGYEAWRN PYTYPFNPATDIDSPI >gi|283548474|gb|GG730303.1| GENE 301 316949 - 317581 384 210 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086584|ref|ZP_06356217.2| ## NR: gi|291086584|ref|ZP_06356217.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 210 7 216 216 421 100.0 1e-116 MHKCCLMASVMLMGVAHAALPPPEIPDEMVMTPTTTLVLPSGVMLGNYFPRFEDTTLSQV QQAIGVNSGIAHQGDAGGSIYWLCYTIPVKHGGQHLWLIASGEMGGLEHDITEVTVQSAN GTAPTSDCPALPSRFQPVRLDNSPVWPGVSRAKAVLSTGGGNQNGNWLFLSSEKWVPPGS CEEAAQENSMYIHTVFGHVDIVDAGQITAC >gi|283548474|gb|GG730303.1| GENE 302 318196 - 318366 62 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086585|ref|ZP_06571570.1| ## NR: gi|291086585|ref|ZP_06571570.1| long-chain fatty acid transport protein, outer membrane protein [Citrobacter youngae ATCC 29220] long-chain fatty acid transport protein, outer membrane protein [Citrobacter youngae ATCC 29220] # 1 56 11 66 66 97 100.0 4e-19 MALYLRYNNNDYTISHYIPVDNSNNYLAEFNTSLRKNISGIVYNAGCLAKPGEKND >gi|283548474|gb|GG730303.1| GENE 303 318378 - 318896 304 172 aa, chain - ## HITS:1 COG:yieJ KEGG:ns NR:ns ## COG: yieJ COG3196 # Protein_GI_number: 16131585 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli K12 # 2 172 25 195 195 230 66.0 8e-61 MQDQIVTCICCQQQSNIYYKSPFYSRHTMGNLCPWCIADGSAAEKFEGSFQDESSIEGVE AKFDNDGEFCGIHNPYPQEQVNELIKRTPGYHGWQQEFWLAHCSDFCAFIGYVGWDEIKN QLDEFVDLPSDCANFGMEYSQLEKNLVNGGDCQGYLFRCLVCGKLRLWVDFS >gi|283548474|gb|GG730303.1| GENE 304 319037 - 319294 145 85 aa, chain - ## HITS:1 COG:YPCD1.90c KEGG:ns NR:ns ## COG: YPCD1.90c COG4644 # Protein_GI_number: 16082773 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, TnpA family # Organism: Yersinia pestis # 8 64 502 558 771 70 61.0 7e-13 MFDAEVSVKPVAIQDSIFVLKELLALQTGLNPVKIMLNTAGASDIVFSLLRLPGSQFSPQ LDSALKLCTVHALDLILSLQKCLCP >gi|283548474|gb|GG730303.1| GENE 305 319493 - 319840 74 115 aa, chain - ## HITS:1 COG:no KEGG:EbC_05870 NR:ns ## KEGG: EbC_05870 # Name: not_defined # Def: conserved uncharacterized protein # Organism: E.billingiae # Pathway: not_defined # 1 115 9 121 121 102 46.0 6e-21 MKKVIYIALLGYIALTTNAFSTELPPIAQQVKKILEQNKLLDDPKCTDYAYIPDYEPGVD AVDVMEIHGGNCPGDPQIQHRLFSVFVDQKAHTMESDIDMDDQVNGTRSAFPPKK >gi|283548474|gb|GG730303.1| GENE 306 319843 - 320706 48 287 aa, chain - ## HITS:1 COG:SPy1438_1 KEGG:ns NR:ns ## COG: SPy1438_1 COG1705 # Protein_GI_number: 15675348 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Streptococcus pyogenes M1 GAS # 145 270 23 149 174 96 41.0 6e-20 MRWKISRAVGVNQPNNPADVKKIQVLLNRAIRDDNLESLKEDGLWGPKTFARLVYFQKNV VHLAHVDAVVNLHGPTFRRLNQANSVPHHEVSSHQKQTAIIPDSSHIKQLAQRASLPLPA IKSEWINRALPAAIDVKRNWGVPIAVTIAQGALESGWGHKAPGNVYFGVKGKSPNGKSIN ITTHEEYGGSLTKINDSFRSYDSLEQSADDYGRFLGTNKRYAAAFAYSNDPEKFIHEVAK AGYATDSHYEKKILNIIRTTGIKDFDTAGVSVSMCYINPLHYFSLLE >gi|283548474|gb|GG730303.1| GENE 307 320742 - 321221 463 159 aa, chain - ## HITS:1 COG:ECs0216 KEGG:ns NR:ns ## COG: ECs0216 COG3157 # Protein_GI_number: 15829470 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1 159 1 159 159 219 64.0 2e-57 MANPVYLTLNGDLQGLISAGCCSQPSIGNKAQVAHQDQIMVLGLSHGMTRAQNVNLQVMV IQKPVDKSSPLLTKAISENECLTCDFEYYRTNRFGINELYYKVKLINARIASIAHTVPHT INNSEGQPEESVSLTYESITQEHCIAGTSAYSLWEERIF >gi|283548474|gb|GG730303.1| GENE 308 321239 - 322582 860 447 aa, chain - ## HITS:1 COG:Z0249 KEGG:ns NR:ns ## COG: Z0249 COG3515 # Protein_GI_number: 15799898 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 1 439 31 472 499 634 73.0 0 MNTPTDSQIIITGADPRNLPEFSAIREEINKASHPSQPELNWRLVESLALTIFKASGVDL HTATYYTLARTRIQGLAGFCEGTELLAAMITHEWDKFWPQSGPARTEMLDWFNTRTGNIL RQQTSFTENDLPLLYRTERALQLICDKLQQVELKRQPRVDNLLYFMQNTRKRLEPHPKSN TEATRSSPVRTLVYAPESIESITTGEIPPPPPDLPEMRVKVLGVAESSSTATPGGLVKGF MGGAICTVVIAAALWWWRVYPLQQELAQVRNSAQGAASIWLASPEPGSYEQHLQQLLDAS PLQSLNTGIQMTRAANARWPGNQLQQQASAKWDEALETRAKDSPQLRGWLQTRQNLHAFA DLIMQREKEGLTLSYIKNVIWQAERGLGQETPLESLLTQYQDAQAQGQNTDELEKQINEQ LDGVLSRWLLLKNNAMPEMATKTKSAK >gi|283548474|gb|GG730303.1| GENE 309 322794 - 326312 2672 1172 aa, chain - ## HITS:1 COG:Z0250 KEGG:ns NR:ns ## COG: Z0250 COG3523 # Protein_GI_number: 15799899 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 30 1172 1 1144 1144 1900 83.0 0 MRLPTPRLFSGLKSALRPAMPRFKVSAFGLLVLAWIFLLVLIWWKGPSWTLYGGQWLRPL ANRWLATAAWGIIALGWLTVRVIKRLQLLEKQQKQQREEAQDPLSIELNAQQRYLDRWLL RLQRHLDNRNYLWQLPWYMVIGAAGSGKTALLREGFPSDIIYTPEAIRGADQRLYLTPHV GKQAVIFDIDGALCEQPGADILHRRLWEHVLGWLVEKRSRQPLNGIIITLDLPDLLTADK RRREHLLQTLRGRLQDMRQHLHCQLPVYIVLTRLDLLQGFAALFQSLDKKTRDSILGVTF TRHAHENEGWRTELDTFWQTWCGQMNQALPDLMLTQNVMRSSLFSFTRQIQGSREYLAAL LDSLLDGENMDVMLRGVYLTSSLQRGQMDDIFTQSAARQYQLGDSPLTAWPLVDTAPYFT RNLFPQALLAEPNLAGESRTWLTNSRRRLTIFSATGGVAALLLIIGWHHYYNRNYASGVQ VLKQAESFMAIKPPQGMDDYGSLQLPLLNPVRDATLAYGNWDDRSRLADMGLYQGRRVGP YVEQTYLQLLEQRYLPALFNGLVKAMNAAPPGSEQKLAVLRVIRMLDDKSGRNNDVVKQY MAKRWSDKFHGQRDIQAQLMSHLDYALKHTDWHAARAAGDGDAINLWAPYDNSVSAAQKE LSKLPVYQRVYQSLKAQAQGVLPADLNLRDQIGPTFDQVFTSSDDSKLVVPQFLTRYGLQ SYFVKQRDELVKLTAMDSWVLNLTRSVQYSEADRTEIQRQLTGQYISDYIATWRAGMDNI NVRNYDSVAQLTSALEQIISGDQPLLRALTVQQDNTQPAVLPERLSDKEREDAQAELDYR LLTQLGHAFAPENSTLTTQDNKENTLQAVYQQLTELHRYLLAIQNAPVPGKSALKAVQLR LDQNGSDPIFATRQMAKNLPAPLNRWVGKLADQAWHVVMVEAVHYMELDWRDNVVKPFNE QLANRYPFNPRSSQDASLDAFERFFKPDGVLDTFCQQNLKLFIDNDLSRGGNDGVIIRED VIRQLGTAQKIRDIFFSKQNGLGAQFAVETVSLSGNKRRSVLNLDGQLIDYSQGRNYTTH LVWPNNMREGNESKLTLVGAGNGASHSITFSGPWAQFRLFGAGQLTSTADGTFSVRFNVD GGSMVYRVHADTEDNPFSGGLFSQFRLPDTLY >gi|283548474|gb|GG730303.1| GENE 310 326331 - 327761 944 476 aa, chain - ## HITS:1 COG:ECs0220 KEGG:ns NR:ns ## COG: ECs0220 COG3515 # Protein_GI_number: 15829474 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 214 476 3 264 264 365 74.0 1e-101 MATDLYAPDLWISHLLEKIPEEKLSLALADDNPEWEYIDGEIVKLGSLAHSQLDIPEIQR RGLDLLASESKDFRLLAHLLRTLQHAGDLLLALRLLALYVEHYWAVAAPGMSHKKRFATQ VVKRFEAGIPGFAKNASTTQRNALLGELAKLAQSWQLQHAAELAQTTDELFALCQRTFSD ATPVLSPSPTVSDSAPQTATTSAQDSPQKIVPVEPAAPAPQITVDSHDDTTWRDTLLKVA AVLCERQPDSPLGYRLRRHALWQTITSAPPAESDGRTPLAAISADMAADYLARLTCADLT LWQQVEKSLLLAPYWLDGHYLSAQIAQRLGYRQAAEAIRDEVACFLDRLPALAELLFNDR TPFISGQTKQWLASSPSTSQAIPTQHSTEELQVARACFTEQGLEAALRYLDTLPEGDPRD QFYRQYFGAQLIEEAGMIKLAQQQYRILFNTGSRMALAEWEPSLLERLEQKFTAEQ >gi|283548474|gb|GG730303.1| GENE 311 327766 - 328341 315 191 aa, chain - ## HITS:1 COG:no KEGG:ECO103_0217 NR:ns ## KEGG: ECO103_0217 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_O103_H2 # Pathway: not_defined # 1 191 55 247 247 303 77.0 3e-81 MQTCRGEPAALERLDCYDRLLAPLSPAGFGGALVKASFVGTAWTRAMEQEKHRQGNTTDL LTTQTPGDRPTVVITTPAIGHLPPRPVLMFSCVDNITRMQIALTTPREDNDIPVTLKTDN GQFHSRWFVRENGTLLESSRGLSGIDEIKPLFGANTLTIETGSGSTSLTFNISGLSQAIA PLREACHWAGE >gi|283548474|gb|GG730303.1| GENE 312 328479 - 331157 1122 892 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 165 847 149 800 815 436 37 1e-121 MIQINLASLVKHLNPFSRQALEAAAAECMTQQATEITVPHVLLQMLASVRSDLRVIVERA EIDLSALRQALTVENYATARTTDNYPAFSPMLVEWLKEGWLLASAEMQHNELRGGVLLLA LLHSPLRYVPSAAARQLTGINRDRLQQDFALWTRESAETVMQEADGQRASAAAEAGDGLL SRYAKNMTEDARNGRLDPVLCRDREIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLAL RIVTGLVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVIQSPKPVILFIDEAH TLIGAGNQQGGLDVSSLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEP TAAEATIILRGLSAVYEQSHGVLIDDEALQAAATLSERYLSGRQLPDKAIDVLDTACARV AINLSSPPKQISALLTLCNQCEAEIQLLEREIRIGLRTDTSRLDEVRAKHETAQEERQAL EAAWHQQQTLVQEIIILRQQLLAAEENEPDTDVEDIPGTVYPAERLAQLTAELDALHRAQ LLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLPQWLGDTIKGQELAIASLHKHL LTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLTELLYGGRQYLTTINMSEFQEKHTVS RLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEG RVIDCKNIVFFLTSNLGYQVIVEYADNPEAMQEALYPVLADFFKPALLARMEVVPYLPLS KETLATIIAGKLDRLDNVLRSRFSADVIIEPDVTGEIMNRVTRAENGARMLESVIDGDML PPLSLLLLQKMAANTAISCIRLSAANGAFTAVVEDAPADDIVTPQAKDGAVL >gi|283548474|gb|GG730303.1| GENE 313 331169 - 331987 651 272 aa, chain - ## HITS:1 COG:ECs0224 KEGG:ns NR:ns ## COG: ECs0224 COG3455 # Protein_GI_number: 15829478 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 33 270 15 252 253 411 88.0 1e-115 MSEQFVPFTGESALQATENTPGREAFSAQDVGDEISGRQYRLPLRGNSLNPMIDAATPLL GMVMRVARMNSQAMPEHLFARVVTDIQAVEQLLQDQGYEPGVIVSFRYVLCTFIDEAALG NGWSNKNEWIKQSLLVHFHNEAWGGEKVFILLERLIREPKRYQDLLEFLFLCFSLGFRGR YKVAVQDQGEFDQIYRRLHHVLHQLRGDAPFPLLHQDKKTQGGHYQLMKRLTTKHILIGG IVVLALFYLFYMLRLDSQTQDILHQLNRLLAR >gi|283548474|gb|GG730303.1| GENE 314 331992 - 333335 1002 447 aa, chain - ## HITS:1 COG:ECs0225 KEGG:ns NR:ns ## COG: ECs0225 COG3522 # Protein_GI_number: 15829479 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 447 1 443 443 550 60.0 1e-156 MATMKNKVIWQEGLFALPQHFQQQQRNLEYLLNQRIDAQDDFAWGFTSLSINTELLAQGK LMLDNAAGCMPDGTVFSIPEQDQLPVPYQPIDLSRPGSHDIYLALPVISDITCEIEGRQS AGQGTERYRLARADIRDLHSDGGDVQQVVLGQLAPKIVSGADDLSAMVTLPLCRIRSQQP NGALVLDDSFIPTCQAIRVSPILNGFAGDLQGLISNRASELAKRIGSPEQSGIADVAEFM MLQMLNRSQMHFTHRSHLHTLHPAAFYLDLIRLLGELMTFTEDSRLPCAVEVYSHRDLTQ SFKTVIPELRRALNTVLMPRALNLPLVFSDGFYVATVNDPGLLRSGTFILAVRARMPHSQ LIHQFTQQSKIAATNKIRDMVSVQVPGVPLTPRTAAPRQLPYHDGFVYFELDKGAAAWQD VVKAGALALHISGTFPELSIQLWAIRG >gi|283548474|gb|GG730303.1| GENE 315 333338 - 333871 409 177 aa, chain - ## HITS:1 COG:ECs0226 KEGG:ns NR:ns ## COG: ECs0226 COG3521 # Protein_GI_number: 15829480 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 7 176 4 173 174 257 75.0 6e-69 MTGRFLRACLVIVLFSFTLTGCETVQKIGQVIKNPDIQVGDRSDQPSDVTVTLLTEPDTN ANADGEATAVDAQLIYMSEDSKLQAADYDTVASTALPDVLGKNYIDHQDFNLLPDTMKTL PPVKLDAKTRFIGVVAYFSDDQAAGWKQIEPVESTGHHYYLLVHVRQDSIDIKKEDN >gi|283548474|gb|GG730303.1| GENE 316 333868 - 335166 1023 432 aa, chain - ## HITS:1 COG:Z0258 KEGG:ns NR:ns ## COG: Z0258 COG3456 # Protein_GI_number: 15799907 # Func_class: T Signal transduction mechanisms # Function: Uncharacterized conserved protein, contains FHA domain # Organism: Escherichia coli O157:H7 EDL933 # 2 432 5 433 433 574 71.0 1e-163 MEPHMAEEKTQSPSLSLTLQVMNGNELESGRAAKCLFTADGGDIGSGSARHWPVQDRAGS VADRACQVVLHDGAFCLRSLVPGLMINLAPVSTDAGLVRLRQGDEVILGALALKVFIHEG KQVSYSEQMAAPEAIVTNRDRLTDALLTTDGQPAYPGMPRMHQLADTVVNSFSTDPLQAL QAESLTVAGDPLGGIVPTRSSTSDRDGAIDKPFMDLPPIYSDSRVNHDDKTSPADDAQLH LAVTPLLRGLGSSLVVRNSQDADDFLEEAGRTLQAAIRGLLELQQRRNSLSDKHLRPLED NPLRLNMDYSTALDVMFAEGKSPVHLAAPAAVGESLRNIRHHEEANRAAIVESLRVLLDA FSPQSLMRRFVQYRRSHELRQPLDAAGAWQMYSHYYDELASDRQQGFEMLFNEVYAQVYD RVLREKQREPEA >gi|283548474|gb|GG730303.1| GENE 317 335171 - 336214 707 347 aa, chain - ## HITS:1 COG:ECs0228 KEGG:ns NR:ns ## COG: ECs0228 COG3520 # Protein_GI_number: 15829482 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 24 346 38 359 360 379 57.0 1e-105 MATHRPARPDVGETAPFPDVRGINFYVLMESLHRRYGKADEEPSLRTEPEQEVVVFKSDA SIAFPGSDLSTLERSESGQFILTTKFLGFSGSQSPLPGYYLDRMARESAQNEEGLKAFLD LFSHRWTQFAYHAWRKYRYYISFRNGGTDTFSLRMYAMVGLGNPSVRDRLAINHSKMLAY AGILATPGRSPDVVCNLVSHCFDLPDVSIENWQLRKVPVDPAQQNRLGVRNPKRRTAGYI AGRSVIGVNFTLGACVPDRSGKFLLRLGNLSMARYLSFLPEGENHQALTLFISFLLRDQL AWDLQLDLAPEQAERMRLGDRPRSCIGRTAFIGQPKTPPSITLHIRD >gi|283548474|gb|GG730303.1| GENE 318 336181 - 338013 1145 610 aa, chain - ## HITS:1 COG:ECs0229 KEGG:ns NR:ns ## COG: ECs0229 COG3519 # Protein_GI_number: 15829483 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 12 610 12 616 616 730 58.0 0 MAFEERYYREELDYLRQLGKLLGREKPYLARFLAEKEGDPDVERLMEAFAFLSGGLRQKL EDEFPEFTHGLINMLWPNYLRPVPSMAVIEYKPVAAQFSAPVQVCRDELICSGPVRVTSS GRKVLAGDDIATSPACHFTLARDVWLQPLRVNDVRNTSTLKRGCIDIDFSTEGNVSPDTL DLNKLTFWLGNEDDYTRQQLYLWFSERLMDAELIAGEWRIPLSELWLEAAGFERDEALLP WPKNVHTGYRVLQEYFCYPESFFFFHLRDVAPLPEDFPVGAFTLRLYFNQPLPADIKLRK NSLRPYCTPAVNLFAHHAEPVSPDDSAPQYALRASQQNPEHYDIFQVKSVSSKISASDRI PGPDEKIHIWPEFEGFQHQIEYSRQREVVYWHHRTKTSLFHQGLEHAIAFVHADGNPSDN SQLKNEVFTASLVCTNRMLPASLHTGDICVPVDKNPAVASFSNVTRPTRPLYPVTDGDMH WSLISCMNLNYLSLLDREALIQVLRTFDLPGIHHPQQARLSSQKLDAIEKMESRPIDRLF KGVPVRGLSTTLWINPAPFVCEGEIYLLGTVLSCFFALYASINSFHCLRIINTDSQESWE WQHTGQHALM >gi|283548474|gb|GG730303.1| GENE 319 338019 - 338441 117 140 aa, chain - ## HITS:1 COG:ECs0230 KEGG:ns NR:ns ## COG: ECs0230 COG3518 # Protein_GI_number: 15829484 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 140 2 137 137 110 42.0 9e-25 MLSGRESGGSLFERIREAAKPSVDRNPTLTLVQSVKSSLQNILNTRSGSCYGSPELGLLD LNDDSLASMNIRDATARIVRTCILRYEPRISDATVIARAQDENSPLELCFHIRAHVNFSN RQDILEFDMLLDNHQHWRVE >gi|283548474|gb|GG730303.1| GENE 320 338447 - 339931 1440 494 aa, chain - ## HITS:1 COG:YPO3706 KEGG:ns NR:ns ## COG: YPO3706 COG3517 # Protein_GI_number: 16123844 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 6 494 1 493 493 761 73.0 0 MSETTLPEASASTTTGAEPNLLDEIMAQTRFKPESESYGIARQGVTAFISELLRSDDETE SVDILAVNGMIADIDERMGRQMDLILHAPEFQELESFLRSLKLLVDHADPRENIKIHIMH ATKEELLDDFEFAPEITQSGFYRQVYSSGFGQFGGEPIAAVIGNYAFDNTAADMKLLKYI SAVSAMAHCPFLSSVSPEFFGLDSFTELPGIKDVAAIFEGPAYTKWRSLRESEDSRNLGL TAPRFLLRHPYAPDENPVKSFNYHEDVSKDHEHYLWGNTAFLLAANMAESFMSTRWCPNI VGPQSGGAVKDLPVHLYEAMGQLQAKVPTEILITDRREYELAEQGFITLTMRKGSDNAAF FSANSVQKPKIFPNTPEGKEAETNYKLGTQLPYLFIINRLAHYIKVLQREQLGSWKERGD LERELNTWIRQYVADQENPPSEVRSRKPLRQAKIEVSDVEGEPGWYQVALSVRPHFKYMG ASFELSLVGRLDKE >gi|283548474|gb|GG730303.1| GENE 321 339951 - 340457 400 168 aa, chain - ## HITS:1 COG:ECs0233 KEGG:ns NR:ns ## COG: ECs0233 COG3516 # Protein_GI_number: 15829487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 10 163 7 161 166 171 58.0 8e-43 MSSRKNDGGGSIAPKERVNIKFQPKTGNQTAEVELPLNLLVTGNLTGGVDDTPLDERQPV AINRNNFNAVLDQAGIGRDFTVPSALNETSDARMSVNLKVKSLADLAPDNIAAQVPEMQK MLELREALVALRGPMGNIPAFRARLQALLNDEKSREQLIAELGLAGRE >gi|283548474|gb|GG730303.1| GENE 322 341198 - 341716 609 172 aa, chain + ## HITS:1 COG:ECs0234 KEGG:ns NR:ns ## COG: ECs0234 COG3157 # Protein_GI_number: 15829488 # Func_class: S Function unknown # Function: Hemolysin-coregulated protein (uncharacterized) # Organism: Escherichia coli O157:H7 # 1 172 1 172 172 323 91.0 7e-89 MPTPCYISITGQTQGNITAGAFTAPSVGNIFVQGHEDEMLVQEFQHDVTVPTDPQSGQPS GQRAHKPFIFTVALNKAVPLLYNALASGEMLPKTELHWWRTSVEGKQEHFFTTRLTDSTI VDIDCHMPHCQDADKREFTQLVKVSLAYRKIEWEHVKSGTSGADDWRAPLEA >gi|283548474|gb|GG730303.1| GENE 323 341927 - 343915 1472 662 aa, chain + ## HITS:1 COG:Z0267 KEGG:ns NR:ns ## COG: Z0267 COG3501 # Protein_GI_number: 15799916 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 EDL933 # 3 662 2 687 713 713 54.0 0 MSSNGLRFTLEVDGVMDTAMAVVSFSLYQCYSTPFALEVDIASTLPDLVATDFLEKNALL TIWQGTEPQRYVSGIINGITLGEHNHWQMLYHLTIVPPLWRCGLRQNFRIFQQQDIQTIS STLLNENGITEWTPVFYESHPAREFCVQYGESDLAFLTRLWSEEGIFYYDWLAPDGPEQK LVLCDDVAGVSTLGEMPFNPNTSTEVSTECISSFRYRARTGPSSVETQDYTFKTPGWPGY YGRAGENLNGQLTQYEIFDYPGRFKDEAHGQAFARYQIEGWRHDTETATCISNSPKLWPG KRFTLTGHPSQTLNREWQVVSCTLTGSQPQALHGSQGEGTTLDNHFEVIPADRTWRVPPQ KKPSVDGPQSAIVTGPAGEEIFCDEHGRVRVRFHWDRYCPGNEDSSCWIRVSQAWAGTGF GNLAIPRVGQEVIVDFLNGDPDQPIIMGRTYHQDNRSPGNLPGTKTQMAIRSKTYKGDGF NELRFEDATGQEELYLHAQKDMTTEVLHDRTTTVDHDHSETVKNNQTVTVVVGQTVSVGS KKESGHDQKTTVAHDQEITVQNDQRLHVVHDRHKDVDNDQFIWVTGNDTETVVKDQNITV NQNYTLNVHKITQIISGDLIELTCGVSSIKMEKSGKITITGTEFDFTANGLVNIKGKKID LN >gi|283548474|gb|GG730303.1| GENE 324 343930 - 344985 271 351 aa, chain + ## HITS:1 COG:PA0097 KEGG:ns NR:ns ## COG: PA0097 COG5351 # Protein_GI_number: 15595295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 2 334 30 358 399 141 33.0 2e-33 MIQVENHTPFPAMAFEKHGRLGYVFDVIAFRMTFRLKNGYYADLADEQAGLIMADEYYGD PETSSLKSETDLVLYKRNTDIHIIGSASPLGGSGTQWMAGIRVGDFSKRLMLSGPRYWRY ENHRWRLGLPESVASVPLRYELAYGGVWPAGDKAEDKQIFPANPLGCGYYPDIRHLDITQ EYRAPQLTRFSQDNEESSHNIDTICTPQGTGPMSRWWQNRLQYAGTYDDNWRENCRPFFP DDFSECFYNSAHPELIYPSHLSGNELIVLEGFLPESGRIVTGLPGYQPVCVLTDSNNHLH TRLPVADTLTINLDEHLVNLTWRLTVPVALQMQEAVLGCLVPPQTKGACRG >gi|283548474|gb|GG730303.1| GENE 325 344978 - 349810 1962 1610 aa, chain + ## HITS:1 COG:YPO3615 KEGG:ns NR:ns ## COG: YPO3615 COG3209 # Protein_GI_number: 16123757 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Yersinia pestis # 425 1492 316 1391 1512 801 40.0 0 MADKHIADGESAFRAVNSSPDACKVGDVVVPFDCFQVLSNKKQYSETVWARGFSVLNVGS VIAGTQSNAGKGVISGTSLGSGDCTILSGSPTVSVEGKAVALYGSLVGMNNMNCQGKLLT KQAPPNDVVKDNALPCNNPPVSSPRLEELMKSRQEVSNSLMESLRKSLDFSKGINSADEW TKEQIDKLRSVPLESGSGQMIYDMETGAEIPVDVYNAQNEINAGVVRGLLGFGRSLVSGI ASLGNMLDQQLLEDPRVKPLEAMILAENIRLGNVCLEGIEKQISDTWDGIKAKASKEWDD FQNASAGDKAEIVTRALAEIATLPIPASEVGLLSKVGVAADLAKAAETTELVSDAGKIVN TAKATGEIANDLGKTADASETTSFLNKTDDIASKNKNDGPYVDENAQVNDGEGKTPDNAS TCKGDPVDVGTGDLLQQLSVLTLPGALPLTLSRTYRSRPARVGLFGPKWVDEWSCSLQLQ GKALHFTDPEGTVLYYPLPRNGVFNNARNSRQGYYRLFGDIRQTLTIVDQRRQLTMHFSP SASGCFLLSALHDRHNNQIDFIRADGLLVEIRRSDGYTLELGWERQQLMSIDLVTPQRQR LVTCNYDSNGFLAECDTFQFSHLWHEYTSEGWMTHWRDTDKTRFYIKYDVTGRVTETRTD EGYYCDRFIYDDEEKCTTYLDAEGGESRYWYNNDGLVIRTQDELGRESFARWDNTRLLSR TDALGRITKYIYNSNDEISQVSLPGGYSLYYDYNERGQLTRLSAPGNQVWQWAYDDKGSM VSLTDPQGRHQQFSYSEQGDLLARIMPNGAAWRWHHDALHRVQEATAPNGGVVQTEQDML GRLLSVKDPLGYTTQFRHSKNHAGPQGSVEEINRPDGVRELMSQNGEKLPESFTDGEGKT TLYEYGAFDLLTAVVRPDGERLTCRYDKLTRLTEITNAEGGHYRLTYDNAGQLIAETDFT GRTLTYQYDAGGRCIRTTFPDGTHLNRRYNVTDQVTDEEVTQGNSDRVLSRTTFIYDELC RLTEARNDDATVTYEYDEASRITAETINGRRTEYRHDAELDTVAQRTTAGVTEYFTRGLM GELTSWRITGHAPLTFEYDLRGQETARKSEAGFYQRLDYTRTGMLAAQRAGSQAEPGVKN KDLQRQWGYDRAYNLTKISDSLRGTMVNSMTANDQIHQAAWADSGNALMQEERFTYDKNL NITRSQTWVNSVLESEAHQQQQHGRVVSREYKGWRHSAHRINPETGKAEEGRFVRIVRQD NTTWKYDANGRLTEKLVDKGGYRLLQWRYRWDARSQLTGLETPEGERWEYKYDPFGRRIS KRCINRDRPGMDFHWNGNQLTEEIPVGPDNTPQVENVVRWMYEPGSFTPLARYEKGQLHY AVTDTVGRVQELLTEAGEIVWQGKQQLWGREESRNREGAPSCHLRFPGQYEDEESGLYYN RFRYYDCGTGQYLCADPTGLRGGLNPYGYVKNPLKYIDPLGLCKETGGRQVLNPESISGW EKAESMYDLIRFDPNDISLIAKNTGWKESIIARVKNHLFFKDHMLDRGLSRFDADPAIVN AWDRLKTGDYTASDINLLRHEQFESRFEGIFGTDYRVAHDAAERSGRVWE >gi|283548474|gb|GG730303.1| GENE 326 349814 - 350068 94 84 aa, chain + ## HITS:1 COG:no KEGG:RCFBP_10027 NR:ns ## KEGG: RCFBP_10027 # Name: not_defined # Def: hypothetical protein # Organism: R.solanacearum_CFBP2957 # Pathway: not_defined # 1 84 1 79 79 70 47.0 2e-11 MAYHIEILKFEETDEMAKYKFGPTSSKYSITDYGVFEINKKNGEVALLKQVTNDTKNVFY MRAMFKILTCWRKGYLPEKEEWAS >gi|283548474|gb|GG730303.1| GENE 327 350256 - 350411 147 51 aa, chain - ## HITS:1 COG:no KEGG:SEN0274 NR:ns ## KEGG: SEN0274 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_Enteritidis # Pathway: not_defined # 1 51 17 67 85 83 80.0 2e-15 MTTYYSQHPSRHLKGDCLKGAGFETGRGVTVKISEGCIVLMADNNEVQELR >gi|283548474|gb|GG730303.1| GENE 328 350652 - 350996 176 114 aa, chain + ## HITS:1 COG:no KEGG:Pat9b_2498 NR:ns ## KEGG: Pat9b_2498 # Name: not_defined # Def: hypothetical protein # Organism: Pantoea_At-9b # Pathway: not_defined # 1 114 1 115 115 125 61.0 6e-28 MSPLKYRKAYILDDLISKIMSGYKKDNFCLYTKEYESSARTDLICYLDIYPVISDDDEEI YPEFVVNNSLELFFYGEQFLDVLRNISVQKENPSMEEFMAGLNFYLENDNFIDL >gi|283548474|gb|GG730303.1| GENE 329 351578 - 352870 777 430 aa, chain - ## HITS:1 COG:ECs5093 KEGG:ns NR:ns ## COG: ECs5093 COG0477 # Protein_GI_number: 15834347 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 13 419 26 444 500 197 29.0 3e-50 MADSAYTRVPVASMAIAALSTIVEWYDFTLYLYFATVLSRVFFGGGDMSLIITLSGFAVS YLLRPLGAVYFGQIGDKYGRRQMMLISMALMTSTMLLTALLPTHQQVGSVAGISILILRA VMAFSVGGEYTGVVAYLLESATSERRGLITSLASAASEVGGLIAVGVSAITVNMLSPASL EQWGWRVPFLIGAVLAAVLWAARTTLRESPDFEQYQSKSIPLTLSQTISRYRQAVGRTFA ISALGSITYYIGIVYIPVFLVSTGIYTEKNALSLSTIAAFSVIVVTPITGHLSDRLGRKP VLLFLTCCCIALPLMTFRLMAEGNYLLTMCGSIVLACIAGGISAVGTSATAEQFSIDGRL MGLALGTTAATALFGGLTPYLAQVLTHHVGGQSIPGIMIMAVALFVLPVFMRMSETAPKI QCGKPDDNTQ >gi|283548474|gb|GG730303.1| GENE 330 352863 - 353852 779 329 aa, chain - ## HITS:1 COG:AGc1508 KEGG:ns NR:ns ## COG: AGc1508 COG0604 # Protein_GI_number: 15888165 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 326 22 347 348 127 29.0 3e-29 MNKMKAVVLEGPGGPEALQIRQIPVPEPLPGQVLIRVHAFGLNQSELHLRLGLAENAAFP VVPGIEATGIVVACPGQEFTPGQQVVTMMGGMGRQFNGGYAEYTCVPARQVIAFNSSLDW ATLGAIPEMLQTAWGSLHIGLNAQKGETLLIRGGTSSVGMAAALLGKQLGMTVLSTTRSP VQKADALYRLGVDCVLIDDGNVAAQVREQYASGIDCAIELVGTNTLPDTLAAVKIHGTVC FTGMLANQWIVKDFYPMDYLPYGVRLTAYSGEATDLPAPVLQQFINDVAEHKISVPIADI YTLDEIVQAHCALEAGQHSGKLVVVIPHG >gi|283548474|gb|GG730303.1| GENE 331 353849 - 354280 277 143 aa, chain - ## HITS:1 COG:no KEGG:RER_37200 NR:ns ## KEGG: RER_37200 # Name: not_defined # Def: MarR family transcriptional regulator # Organism: R.erythropolis # Pathway: not_defined # 8 106 10 108 153 97 49.0 1e-19 MTADIDTFSHLVRSQILLWNACNERVKTSTGLPLARFDVLRTVEQLPLCRVNDIAELMLI TVGAASKLVDRLELSGYLQRQPNPADSRSSLISLTSEGRVIVKQAEHEIAALLKTHLSGV DQHALNNTLALIEHNIHTSGKKS >gi|283548474|gb|GG730303.1| GENE 332 355937 - 356230 131 97 aa, chain + ## HITS:1 COG:no KEGG:KP1_4250 NR:ns ## KEGG: KP1_4250 # Name: fim # Def: putative chaperone # Organism: K.pneumoniae_NTUH-K2044 # Pathway: not_defined # 2 90 131 215 220 69 40.0 3e-11 MKLFYRPEKLSDEGADNAWQKIELSQHGKSIAIKNPTPYFVTLHTLSIDGQASSAVKNLM ISPFSEISTPATMTAHSVKWNALTDQGGITSEKSTDL >gi|283548474|gb|GG730303.1| GENE 333 356607 - 358712 777 701 aa, chain + ## HITS:1 COG:STM4593 KEGG:ns NR:ns ## COG: STM4593 COG3188 # Protein_GI_number: 16767834 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Salmonella typhimurium LT2 # 5 685 134 828 845 402 35.0 1e-111 MTFSFNTNKLLLDINIPQVALKAGPDDDLSVPVNQWDNGISALSLNYDFNGAQKSDSGKN FKADDQYIQLNSGLNIGAWRLRNTGTADKPPEGSISWDSSKTWIQRNIPALRGRLSLGDN SSDASLFDGIDYSGVSLTTDNSMYDDKAQGYAPVVRGIARTSNALVEISQNGNVIYKRYV PAGQFLINDLYPQTGGGLLKVKITEADGSEHHFTQAWGTVSAMQRQGFLKYSLNAGRTKN SNVKNENFSQLSFFYGLPADMTIFGGSFLTSSYHAFDIGYALGLSQFGSVSADIKFMQAH PYETLDTQGQNYRLQYVKNVPGSDTDFSMSWAFSPAPNYISYPDAITDYDDDVDESSMYQ KNQLQLSVNQPFDENNTVILSLIRTAYWYKNTEESLTLTDNLSIYSASLNVGWAWTQDSD GSSEQLLSLNLQIPFSIFSNDTWISLSNSLQRPGAPTQSVGLNGNALGNDALSWQLSATN GDPQTTTQDVSLDYKGSYGEYTSQYSHSSQQQSLSYQIKGSLIGSSYGLTAGQYFNANNA VALIKAEHAPGLKVENQTGVTTDFRGYTIVPYLQPYREDSITISKEEETDTDIELGNTSL SRVPTEGAIVLAEFTPHIGQKLLLTLTTPSGTSVPFGATVTAGEGSNEGIVDENGAVYLV GAPPEGTITAKWGDAGRECHAPYQIQKKSRKHFYALSLVCR >gi|283548474|gb|GG730303.1| GENE 334 359380 - 359616 136 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086598|ref|ZP_06571579.1| ## NR: gi|291086598|ref|ZP_06571579.1| putative fimbrial protein [Citrobacter youngae ATCC 29220] putative fimbrial protein [Citrobacter youngae ATCC 29220] # 1 78 216 293 293 160 100.0 4e-38 MRWEGMSDKNGYLQSPVMIKNNIAISLQQKNGINMPINKSVKIVPQNGNFIFQAKLLSTG TPHPGAFNTTANLHILYP >gi|283548474|gb|GG730303.1| GENE 335 359669 - 360202 173 177 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836513|ref|ZP_06356254.1| ## NR: gi|283836513|ref|ZP_06356254.1| putative type-1 fimbrial protein, C chain [Citrobacter youngae ATCC 29220] putative type-1 fimbrial protein, C chain [Citrobacter youngae ATCC 29220] # 1 177 1 177 177 274 100.0 2e-72 MKKIIQLGILAAAITASCATNAADSKGVAVEFSGILANSSCNVSVNGGQTIDMGTVSTAG LKIGDETEAVPFTVDISGCPSSISTASLDFEGTSFTGDNTLFALTSTVGDQLHQIGMKIN AVGYGSGVSLTPNVGSGPETLTDGAVSIPLSASLKLKSSTVDEGKFAVSTSLHVIYD >gi|283548474|gb|GG730303.1| GENE 336 360739 - 360963 337 74 aa, chain - ## HITS:1 COG:YPO1917 KEGG:ns NR:ns ## COG: YPO1917 COG0582 # Protein_GI_number: 16122165 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Yersinia pestis # 2 73 3 74 420 85 51.0 2e-17 MLTDTRIRAAKSLGKSYKLTDTHGLYLMVSTTGSRLWYFRYRFAGKESRLAFGAYPQATL AEAREKRDAAGKLQ >gi|283548474|gb|GG730303.1| GENE 337 361066 - 361221 56 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086599|ref|ZP_06571580.1| ## NR: gi|291086599|ref|ZP_06571580.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 5 51 1 47 47 77 100.0 4e-13 MGAFMGALFTKKTNKNNEKHRVNSGFDSESGTTFLFLCFSGCLYKSLDSDS >gi|283548474|gb|GG730303.1| GENE 338 361512 - 361718 231 68 aa, chain + ## HITS:1 COG:ECs3859 KEGG:ns NR:ns ## COG: ECs3859 COG3335 # Protein_GI_number: 15833113 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 3 65 126 188 262 117 84.0 3e-27 MVATHKALDECNAEHPVFYEDEVDIHLNPRIGADWQLRGQQKRIVTPGQNEKYYLAGALH SGMGKGQW >gi|283548474|gb|GG730303.1| GENE 339 362319 - 363251 337 310 aa, chain - ## HITS:1 COG:no KEGG:SARI_03891 NR:ns ## KEGG: SARI_03891 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: Bacterial invasion of epithelial cells [PATH:ses05100] # 1 246 969 1218 1812 76 31.0 1e-12 MADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNILANTTVNWTVTGSAGLTSGT STTNGSGQAVMTFTDTKAETVTLTAKAGSSDAGQSKTSSFVPDSAKFTIDQISLKAPSGN TTVASIGDSIVAKVHVVDSQGSSVNNANVTFNVTGAATLDSPSGTTDSTGWVTVNFTDSV GETVTFTGTLDNGNDSTATMLFQALPFDLVLTQNGARGSAADPIVFTAVVTDKFNNKLQG IKVGWSQPGGFTACSILGGGVTNSNGEAQFSCHAQGGSASGTSETATVTGPTEGGATVSD TLTNINYFFN >gi|283548474|gb|GG730303.1| GENE 340 363408 - 363992 577 194 aa, chain - ## HITS:1 COG:no KEGG:SARI_03891 NR:ns ## KEGG: SARI_03891 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: Bacterial invasion of epithelial cells [PATH:ses05100] # 1 194 939 1133 1812 82 38.0 8e-15 MTFTDTKAETVTLTAKAGGADAGQSKTSSFVADTATAHVSTLTIDTDGSVANGTAQNSAT ATVVDSQNNILANTTVNWTVTGSAGLTSGTSTTNGSGQAVMTFTDTKAETVTLTAKAGGA DAGQSKTSSFVADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNILANTTVNWTV TGSAGLTSGNRLAS >gi|283548474|gb|GG730303.1| GENE 341 364155 - 366143 1694 662 aa, chain - ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 17 661 78 705 1027 491 50.0 1e-137 MTSAASALSSGNATGAATSAATSYASSSVQQWLSQFGTARVQLNIDDNGNWDDSSVDFLA PLYDNKKAVLFTQLGLRAPDGRTTGNVGMGVRTFYLDNWMFGGNVFFDDDFTGKNRRIGF GAEAWTDYLKLSANTYVGTTEWHSSRDFDDYNEKPADGYDVRAEGYLPAYPQLGAKLMYE QYYGDKVALFDTDHLQSNPSAVTTGLSYTPVPLVQLAVNYKRGQDSMDDTQFQINFRYDL GHDWGYQIDPENVRAERSLAGSRYDLVERNNQIVLQYKKKDQQSVSNLNLQITTDNSPSD GLTPNSAQVLATDKDGQPVRNASINWTTTGSAKFTTPTTVTNDSGLSTVSFTNTVPEAVQ ITAKSGAVSATQNSQFSAVMVSNITLKITKDGSIADGKTPDHAVATVTDINNRPVANTQV AWSVDTPAVLKNTQTTTNASGQVTTDFTSTTAGIVMLTATAADKSASQQGHFIASSADNV IDTMVVTLDGSPANGTTANTVNITVKDGNGAPVSNASVSLSSDKGTVVFGSALKSKVKAK TVKTFQTDAQGSLTVAFTDTVAETTQLTATLDNGNSKQASSSFVADTATAHVSTLTIDTD GSVANGTAQNSATATVVDSQNNILANTTVNWTVTGSAGLTSGTSTTNGSGQAVMTFTDTK AS >gi|283548474|gb|GG730303.1| GENE 342 366199 - 366414 71 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086601|ref|ZP_06571582.1| ## NR: gi|291086601|ref|ZP_06571582.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 71 1 71 71 107 100.0 3e-22 MLLYVDTTGHGFNPEFENDTTFISKTMRTVSLFGLATDFLTGFIPFSFCFTTFGNGTKFS RNSQQSVSIFG >gi|283548474|gb|GG730303.1| GENE 343 367233 - 367454 135 73 aa, chain + ## HITS:1 COG:Z3095 KEGG:ns NR:ns ## COG: Z3095 COG2801 # Protein_GI_number: 15802430 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 17 73 64 124 288 81 70.0 3e-16 MPLLDIAPSTYYWHQEWRQLQREGISVARCTVACLMKAVGLTGALRRTTVSRKSEVAHDR INRQFVAERPDQL >gi|283548474|gb|GG730303.1| GENE 344 368692 - 368928 186 78 aa, chain + ## HITS:1 COG:STM2760 KEGG:ns NR:ns ## COG: STM2760 COG0582 # Protein_GI_number: 16766072 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 1 77 1 76 291 80 59.0 8e-16 MGMLMQEMSRLSRQAGGSNKTVHDRMALAQRFCERLVVVQNIQIRQVAQLKARHIEDYIR ERLAQGIARRSLQNEMAS >gi|283548474|gb|GG730303.1| GENE 345 369063 - 369875 608 270 aa, chain + ## HITS:1 COG:STM2760 KEGG:ns NR:ns ## COG: STM2760 COG0582 # Protein_GI_number: 16766072 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Salmonella typhimurium LT2 # 3 264 28 288 291 295 61.0 4e-80 MALAQRFCERLVVVQNIQIRQVAQLKARHIEDYIRERLAQGIARRSLQNEMAAIRCLLVQ AGRNKLATSERISNRALGLAGAPRTGTHRAISAEYYREVLDAARAKDAGLAAALELSRLM GLRSQEAVQSAQSLKTWRQVIERGEPRLTVVFGTKGGRPRETRVLDTDAVKKVLSNAITV AESRNGRLIEKPDLKTAMKYWHSQASRIGLTGAYSPHSLRYAWAQDAIRHYLAQGFSEKE ALAQTAMDLGHGDGRGRYVAQVYGGKGHDY >gi|283548474|gb|GG730303.1| GENE 346 370200 - 371804 1329 534 aa, chain + ## HITS:1 COG:no KEGG:SARI_03145 NR:ns ## KEGG: SARI_03145 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: not_defined # 1 491 1 491 493 642 62.0 0 MTAHSYLEYALTLLGWLINNGIWNIITSTGLFALPLLIKLIAVWLKAREQGVDEGNTGAL TVAWMENVIYVAIIVIMFTCVPLLNVDITALKFDMTRSKQCNISLAQPDDTGYKPLINEV SGKIAAVPVWWYLIHTLSKGLVNAATASLPCQPDLRQIRFEVQHTRLSDPVLAQELQDFV QECYSPSLARLKQHAASLSQTEIDDISWIGSSFFLSHPGYYDTDHARSPWSPWHYDEDRD AGLVDTGNGGYPTCNQWWSDSDIGLRSRVLALVNPSVWQALQKLSYSQPEYEEAVLRSVV SQRNMEVSQTGRVYPGFGGNIDTTMMNQLTRDGATAGQAIASLAAFPAFDSVRQALPMVQ AILLMTLVICIPIVTVFSAYSVRTVLTLTFAQFALMFLTFWWELARWLDGTLLDLLYDSD THSYWNMAGIQNTQDDIIMMFVTGTMFIVLPAFWIGVLSWAGIHLGGVMEGAIRDGVRSS GKSGGNMAAIMINKLMMMSILLTLFILNPYSHFIPARAFGPVIMKTIKHNIFIP >gi|283548474|gb|GG730303.1| GENE 347 371700 - 372047 345 115 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRNNENPGYRFGLFVRRLLAWYTRMAEKARQRGMPRWVIRLPAFLILIVITGLLLAGAVF IALFIILMIFIGIFLVNSSEGLRDKDIMLNGFHYNGPEGPGWYEMGVRVKDEEGE >gi|283548474|gb|GG730303.1| GENE 348 372406 - 372681 206 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836526|ref|ZP_06356267.1| ## NR: gi|283836526|ref|ZP_06356267.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 91 1 91 91 127 100.0 4e-28 MAMTNAERQARYRRNTRERREDYTARLNTEILFGAKSALKRLALHHGLSQREMLEQLITQ ADDALRQSMNDEECDRYLDLTLEPLRININK >gi|283548474|gb|GG730303.1| GENE 349 373061 - 374323 398 420 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165511|ref|YP_001467745.1| 30S ribosomal protein S15 [Campylobacter concisus 13826] # 25 400 31 401 406 157 30 4e-37 MLTDTRIRAAKSLEKSYKLTDTHGLYLMVSSTGSRLWYFRYRFAGKESRLAFGAYPQVTL AEARGKRDAARKLLASDISPSQLRKTEKSPVDESRTFKFIATKWHTNNLVRWSEGHADKI LICLKRYVFPDIGAMDITRIETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQRGL IRYNPAFDLDDVVTPVVTRHHPALPLKLLPELLEKIDGYKGRVLTRLALKLNLHVFLRSS ELRLARWDEFNLKARIWTVPAQREAVKGVRFSERGSKMKDEHLVPLSTQAVTLLEQIKDI SGGAAFVFPGAHSLDKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKD AIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDVSREGYVAPYIYARQYTRAS >gi|283548474|gb|GG730303.1| GENE 350 375225 - 375725 278 166 aa, chain - ## HITS:1 COG:PSLT042 KEGG:ns NR:ns ## COG: PSLT042 COG3335 # Protein_GI_number: 17233422 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 17 166 191 343 345 225 69.0 3e-59 MLGGADKLNGELQSYIIGANNGQQKRVVTPGLNEKYYLAGALHSGTGKVSYVGGNSKSSV LFISLLKHLKGTYRRAKTITLIVDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVE RLWLALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGGKHGLAKV >gi|283548474|gb|GG730303.1| GENE 351 375919 - 376119 150 66 aa, chain + ## HITS:1 COG:YPCD1.97c KEGG:ns NR:ns ## COG: YPCD1.97c COG4584 # Protein_GI_number: 16082780 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 32 66 1 35 308 75 94.0 2e-14 MAKLKPFMDYIDTRLAENVWNGEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKKTVRF ETQPGY >gi|283548474|gb|GG730303.1| GENE 352 376078 - 376395 88 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|253801081|ref|YP_003034082.1| ## NR: gi|253801081|ref|YP_003034082.1| hypothetical protein pVir_106 [Escherichia coli Vir68] hypothetical protein pVir_106 [Escherichia coli Vir68] # 1 95 44 140 140 115 61.0 8e-25 MVSQQQEPGVEHHFSVVIFQHRRFLVINQHRFHTATEVSKGSYQLLIGVFSILLWRGEDM EATGEPQRVNREVNFASLPGDLHLNFAPVVLQLVTGLSFEAYCFL >gi|283548474|gb|GG730303.1| GENE 353 376306 - 376938 215 210 aa, chain + ## HITS:1 COG:YPCD1.97c KEGG:ns NR:ns ## COG: YPCD1.97c COG4584 # Protein_GI_number: 16082780 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 210 99 308 308 376 93.0 1e-104 MLVDNQKAAVLKNNNGKVVFNSGFLLLADHYDFLPRACRPRRARTKGKAERMVKYLKENF FVRYRRFDSFAHVNQQLEQWIADVADKRELRQFRQTPEQRFALEQEHLPPLPDTDFDTSY FDIRHVSWDGYIEVGGNRYSVPETLCGQPVSIRISLDDELRIYSNEQHVASHHLCSASSG WQTVPEHHAPLWQQVSMVEHHPLSAYEELL >gi|283548474|gb|GG730303.1| GENE 354 376938 - 377735 587 265 aa, chain + ## HITS:1 COG:YPCD1.96c KEGG:ns NR:ns ## COG: YPCD1.96c COG1484 # Protein_GI_number: 16082779 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Yersinia pestis # 1 133 1 133 143 253 95.0 2e-67 MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQ ARLPWVKMLEQFDFSFQPGIDRKVIRELAGLAFVERYENVILLGPPGVGKTHPAVALGVK AADAGHRALFMPLDRLVATLMKAKQENRLERQLQQLSYARVLILDEIGYLPMNREEASLF FRLLNRRYEKASIILTSNKGFADWGEMFGDNVLATAILDRLLHHSTTVNIKGESYRLKEK RKAGVLAKNATPISDDEMAESGQQK >gi|283548474|gb|GG730303.1| GENE 355 377750 - 377968 99 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836531|ref|ZP_06356272.1| ## NR: gi|283836531|ref|ZP_06356272.1| transposase [Citrobacter youngae ATCC 29220] transposase [Citrobacter youngae ATCC 29220] # 1 72 1 72 72 118 100.0 2e-25 MSNVLLPMDTRRQLLRALKTRYQAVSKAEKTRIIEEFILISGYHRKSATQKSAQTGNFAV STPRSLTVFRHF >gi|283548474|gb|GG730303.1| GENE 356 378078 - 378308 80 76 aa, chain + ## HITS:1 COG:ECs0328 KEGG:ns NR:ns ## COG: ECs0328 COG2963 # Protein_GI_number: 15829582 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 5 75 62 132 133 114 91.0 3e-26 MAPTQWREGKLLLPSSESPQLLSVTLDAAAVQPEPPAEDPETLSISCEVTFRHGTLRLNG TVSEKLLTLLIQELKL >gi|283548474|gb|GG730303.1| GENE 357 378305 - 378496 233 63 aa, chain + ## HITS:1 COG:ECs3865 KEGG:ns NR:ns ## COG: ECs3865 COG3436 # Protein_GI_number: 15833119 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 1 39 1 39 115 80 100.0 5e-16 MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTALKDDPMYDPAVQRPLRQTRTRKPFPRI STS >gi|283548474|gb|GG730303.1| GENE 358 378423 - 379424 388 333 aa, chain + ## HITS:1 COG:ECs0330 KEGG:ns NR:ns ## COG: ECs0330 COG3436 # Protein_GI_number: 15829584 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 # 3 333 83 417 512 570 85.0 1e-162 MTRQYSAHCVRPAPANRSPESLPRDEKRLLPAEPCCPDCGGALGYLGEDAAEQLELMRSV FRVIRTVREKHACTKCDAIVQAPAPSRPIERGIAGPGLLARVLSSKYAEHAPLYRQSEIY HRQGVELSRSLLSGWVDACCRLLSPLEEVLQDYVLTDGKLHADDTPVQVLLPGNKKTKTG RLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELYRDGR ITEAACWAHARRKIHDVHVRTPSALTEEALRRIGELYAIEAEIRGMPAEQLRAERQLKTK PLQKSLKSWLRKRVKTLSRHSELAKAFVYALNQ >gi|283548474|gb|GG730303.1| GENE 359 379497 - 379709 91 70 aa, chain + ## HITS:1 COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 2 70 444 512 512 140 89.0 7e-34 MVSLGRKNWLFFGSDHGGERGALLYSLIGTCKLNGVDPESYLRHVLNVIADWPINRVNEL LPWRVALPTE >gi|283548474|gb|GG730303.1| GENE 360 379746 - 381167 484 473 aa, chain - ## HITS:1 COG:no KEGG:AciX9_1722 NR:ns ## KEGG: AciX9_1722 # Name: not_defined # Def: transposase IS4 family protein # Organism: Acidobacterium_MP5ACTX9 # Pathway: not_defined # 10 473 10 476 477 479 50.0 1e-134 MVNQEQTSLSWLDEEINFSVFSDRRHASRFKSLMQKLWRGMGNSLPFACQDNAATKAAYR FLSSDRIDEQHLLQGHSEATSQRIHALQDENILLLQDTTTFGYHRDNPDAVGFAGNHTAG LIKTGNDAGINCGILMHSSLAVTTSGLPLGLTAVKFWTRKKFKGTNALKRKINPTRVPIE EKESYRWLENLRQSTELLQCPERCIHIGDRESDIYELYCLASELNTHFLVRTCVNRLAEN TTMEEEMKNVSSDHQGHHKIFLRHDQEGMREIVLNVRWKTLTLHPPIGKAKQYPDLQLTA ILATEECLDNDARIEWKLLTDLPVTNLAEATEKLEWYSHRWKIETFHKVMKSGCQAERSR LGSAERLTNLLCCYCILSWRIFWLTMLSREIPNASVELAFSDTEMKILDTMIKDTAQIMS SPQLEKYTIKLAQLGGYTGNKNKHPPGNIVIWRGLRRLNEIQIGWKLATERCG >gi|283548474|gb|GG730303.1| GENE 361 381293 - 381547 64 84 aa, chain + ## HITS:1 COG:PSLT042 KEGG:ns NR:ns ## COG: PSLT042 COG3335 # Protein_GI_number: 17233422 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 84 261 343 345 122 67.0 2e-28 MDNYIIHKSRETQRWLKANPKFRVIYQPVYSPWVNHVERLWLALHDTITRNHQYRSMWQL LKKVRHFMETVSPFPGGKHGLAKV >gi|283548474|gb|GG730303.1| GENE 362 381553 - 382155 267 200 aa, chain - ## HITS:1 COG:STM3138 KEGG:ns NR:ns ## COG: STM3138 COG0840 # Protein_GI_number: 16766438 # Func_class: N Cell motility; T Signal transduction mechanisms # Function: Methyl-accepting chemotaxis protein # Organism: Salmonella typhimurium LT2 # 35 195 38 198 352 140 52.0 2e-33 MIRKIIAKIAKRNNNYDTSTCIIEAEPSVAEQKTENYNKIICHHFTSGISTLNLIRTSLI STHEQLNTEKDKITELNAQNNKAMLSLESLVIEINEAGKESAEIQKQMTQLKLSLIEIND AIKDIQKIANHTNLIAINSAIEAARVGEAGRGFSVISKEVRQLAENVKTCTNHIFLQTET LQNNGSMVDISIEAQLNSRA >gi|283548474|gb|GG730303.1| GENE 363 383532 - 385859 426 775 aa, chain - ## HITS:1 COG:no KEGG:VPA1373 NR:ns ## KEGG: VPA1373 # Name: not_defined # Def: hypothetical protein # Organism: V.parahaemolyticus # Pathway: not_defined # 21 750 90 804 862 76 22.0 6e-12 MQNLLDALSEDITCKYDADAKLRLKVHNFSSSIALHQSEQHPYLDKNELLQCAKLMRKVS KSLSGGNKKHRVSTHLLSKHLYCAWVQKDVSDRRLKLLQENSRFLQPGNSSHKSVNVGTG AGIPAAHLTSLMLNTGLTVSKTTDCDDEGIVEKSKETNVSAGITASLNLTSHANIKGSIN ASHSRSSRGVNFASLEDYVDSLCSKLRYHGLNKRMGKKHSVKYYQNTSLNNLDRLNHTFS LNGKTPFLFTCRAPHQNNVKLKESHGTVVSASLGANISPLAELSVGGTVGYTHEEKDIYV NFRNSMALEVMSENNPFYHNEIERLAPHFNLALKDLFGEFENNNFLIADAKMLSPAIPQN ILEASLSRLEGLVDVYCMAVRGSDAGDKQCSQLKHQLETRWGVEGKGRYGFLQCSEVMLA LLSKRLKTVSADSLTLNALTDKTRAIDSKITSPSLSYDKSKLEKYTSFNRKLKVELNNNS FDMSFNVGGSVLNGSLTPSAKVHVMIKNNTTRQPGRLRAGNYRDITFDFNTDVNLANIPD NIISAIATQSGIPTSILSNTLTQSISTNVDFSLGGKIIIRYFRPEWSSSLAPQNNKYSHQ FTRVFVNTSASASLNVSEILPVGLNTGFSVSRDKVTHEYLGDKTLSYILIRYAYCKGIWD KGGKQIWTSLMENNHKSLTKIMNDITVPDSQLHEEANLLISEYRNTANDEQVASIETSLG SIFHSLAHAGETTESFNSGIGALQQILDLQQQETGRIFREGLSPQKFSKKMLLTR >gi|283548474|gb|GG730303.1| GENE 364 386167 - 386949 284 260 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086621|ref|ZP_06356281.2| ## NR: gi|291086621|ref|ZP_06356281.2| hypothetical protein CIT292_11024 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11024 [Citrobacter youngae ATCC 29220] # 35 260 1 226 226 384 100.0 1e-105 MKVSNTSLPNYFSNLHNSIAHSGKNKISYADIKSMKSEVAHCIKDKKNISYQDHVEILQT VNKLNNILFQQGSSRLADKSLKINNVLNMLPKLESPGYKAYQTLLTIKDNIISNNKKLAT EKSRADATKNEIYDKLDNLASTGNAQAKLFINKDIFELRDQLVRMTRNYGTTSTITTMQQ HHEYSKPKPVTHTVTKYTDTEHLWLNLKNKTISACKQQSDVTNHQDHINCLKNKAARIAH TFNLVCTSADPYGLNSLKKL >gi|283548474|gb|GG730303.1| GENE 365 387093 - 387725 -84 210 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836541|ref|ZP_06356282.1| ## NR: gi|283836541|ref|ZP_06356282.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 210 283 492 492 368 100.0 1e-100 MSRQEKNQYDHICHVLNQSYVMTTGMKNHIFQPSEKHSLANRDYYAANSLSTTESINTRT SSRFHSQSGDTEENILPSIQAMAEPRLAKSPLMINDQPFQKSEKVPDLHKAENMPKTPSH QYIAPQSAEQEMSPYRYIPSSLSKNDFNATIIKNTNNLSSRELLQQRMTVLVMHSAFLDS GNEKKARQSPVSLTLCLVFLTLSLLVAFLH >gi|283548474|gb|GG730303.1| GENE 366 388683 - 390425 696 580 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836542|ref|ZP_06356283.1| ## NR: gi|283836542|ref|ZP_06356283.1| translocated intimin receptor intimin-binding domain protein [Citrobacter youngae ATCC 29220] translocated intimin receptor intimin-binding domain protein [Citrobacter youngae ATCC 29220] # 1 580 1 580 580 826 100.0 0 MPEFKITPSQYKPIEVLANEKTNNTSPGGTSKRITYANNGTLPEEATISNMLKGAKKDGI DGIEKVLIKMGTNLSGPKYAAKIANTETGEGENATRGLFGQGTPAAIANEKASAARRLLS NNSAPQHEELDAHAPNVKNENNDSSHLAIESADVSDKAPDTQAQVFSTELSPGDNIELST AEFLEGVPDPNNDIAVVSHQNLTKQNIDDTDCVSTTDTDSVSKTNDVNISTDSCTTESTG TQATIRKQVSYGAEPTGHSHRSSDQMALLISTAVTSLVGIVTIATALSKRGESSSDTESA DQISSVEANLSEQIDTLENNAAQEQRLSEGLDQFVANCDGDAAKLTELATDLENNKTEII DTASEQVYQAALTEATNAAYSDPNNQVMDVDNGNLVPTGELTEAAQKECEQQAAAAQQAA ADKMGLALDSAISSIDEKAGDISKLSAEAAQASDKLNTLSASDLATAQSLQNQLQSLEQT KANMTNVTSGLSEQGFRALMATGSISLAAAIPLLTKYALNYHHNGKAQKAAAEQEAAPLT TGEFSQLKKAMATHSTKDGSTATAENIALANKFAGAAGAA >gi|283548474|gb|GG730303.1| GENE 367 390638 - 391081 239 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836543|ref|ZP_06356284.1| ## NR: gi|283836543|ref|ZP_06356284.1| putative secretion system apparatus SsaB [Citrobacter youngae ATCC 29220] putative secretion system apparatus SsaB [Citrobacter youngae ATCC 29220] # 1 147 1 147 147 290 100.0 2e-77 MSAWFGIPDIYWEGKKSHRAGRSVFSVEVGFLPGLIIEDMHFWLLLVQLPKPDKNIELVW LKYTGLLLAANNANYYGVLQRDNTWWLVRRYTASQSMEILQRSTSEHIAIATVIGRRVQR QLIQSGIRGDAEISDKPLFHTTINGWV >gi|283548474|gb|GG730303.1| GENE 368 391174 - 392589 475 471 aa, chain + ## HITS:1 COG:YPO0257 KEGG:ns NR:ns ## COG: YPO0257 COG1450 # Protein_GI_number: 16120594 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulD # Organism: Yersinia pestis # 2 469 62 519 523 435 49.0 1e-122 MTHGMPVSALLKDFGANYGIPVITSPLINDVFIGRFEQSTPDKQLEMLARTYNLVWYFDG KALYIYKSNEVHSTVITPEFDTQEQLKQYVRNSNLLSSGTCQLKQVGVSQSFEIYGVPEC VRHITDIANQLSVAVRNMADVDQRRENVQVFPLKYASATDVNYQYRDQTVVIPGVVSVLR EMNNSQAVNSGATPTQLNAGQQTVDNNGPTFSADPRQNAVVVRDRDINMPMYQRLISQLD HRQDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNLASGGGYATSVINNGSD FMVKVSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLVGDKIAQLASITSGTLMQ VTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQNSEIDTQATLKSGQSLLL GGFIQDQDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFLIKAVPLKI >gi|283548474|gb|GG730303.1| GENE 369 392600 - 393856 471 418 aa, chain + ## HITS:1 COG:no KEGG:YPTB0313 NR:ns ## KEGG: YPTB0313 # Name: not_defined # Def: type-III secretion protein, EscD/SpiB # Organism: Y.pseudotuberculosis # Pathway: not_defined # 1 418 1 404 404 200 30.0 9e-50 MDYLYKIRFLSKPLSGRELYLREGSFSLGPEDCDVWVTLEGYPEKNIILEIKSEGIAVQK NTTLWIDGILHEVESGGLLPLNSALDIAGVHFVLGNADNELSHILAEKRKQSEISPEKSN VRGIFIAVMLLLSIVLLGAVGYTVTDAKAEYAAPLHLGDVKKRVLELERQRVLPGINFKW QPDDTVDIQGQCKNEELLQPVLEFLKQNAVHYSLNVVCDDRLVKNVLDVLQLNGFDRVVA YMDKDPGKVVISGQIDEDIRWQHVVNLLNDMHGLRSWVVKSVNDKELDALIAGLRKTKLL PMLSVQRIDERVVVSGKLNAQERDSLYALIRRHMVAFPGTQEVIYQNINTSSSALGVLPS PVSSIGGNNDYPYLLLEDGSRLQKGAVLPGGYQIQNIDSVNGIELIRHGELLHLPLGF >gi|283548474|gb|GG730303.1| GENE 370 393864 - 394103 74 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKQGKYIVGDLTLHGEMLRHDSSGEHSKRLHLLISTMLQKQGAFPDEYRDILIQALLSCA RVIDKISQRYHVIGSSIKS >gi|283548474|gb|GG730303.1| GENE 371 394137 - 394490 127 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836546|ref|ZP_06356287.1| ## NR: gi|283836546|ref|ZP_06356287.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 117 1 117 117 200 100.0 3e-50 MSDISEILINVERERYKLIEEMKRFEMLKEEFERLNVKAESDPGAAQCLDQFHKQYGTQF LLEVTNIMTQVKIAETQYKSLQRMVNSNPTSAVASTQSVSPPVVPLKEKKAADKHYI >gi|283548474|gb|GG730303.1| GENE 372 394523 - 395122 278 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836547|ref|ZP_06356288.1| ## NR: gi|283836547|ref|ZP_06356288.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 199 1 199 199 337 100.0 4e-91 MPTNTEIYAYSSEFYSTPEITSNYAPAALSTVSVFGYICLLFVEHCYAIGGLVANIGQQY DQQTQDELNCQKMSNEVNEVLVNLQNQANAEDNPNVTAALPDDVVDYINDNEIVITGVTD GGENGSFSPISTDDKFNEGQLQAIKGQFDIMSTEYSDSNSKYQLQLQTALQALTQSITAI SQTMSKSNQVISQIISNFK >gi|283548474|gb|GG730303.1| GENE 373 395138 - 395923 374 261 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086624|ref|ZP_06356289.2| ## NR: gi|291086624|ref|ZP_06356289.2| hypothetical protein CIT292_11032 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11032 [Citrobacter youngae ATCC 29220] # 1 261 1 261 261 416 100.0 1e-115 MTMKIVPISTDHSLVQSMLNIKFANRMNSLLSVQSQCIQNKGEIEGLKKQQQDALDNQAE NEKEYKKEKRHRILHAIVSIFAHVVNLVMTVLRPVKHLMKTARKAITKALHKSIGKSMGG LLKHAGLAKPMKHITAGVKKGAGAAIEKPGLGKRALNHLANGGAKSFLKRTALINGISGG LNGIGDGVFKIQDAKIKNAIANIENNIDLISANFKVSEEIKSKAQDNIKTQVNENIQIME NVASTISKFGNLQMQLLTKAA >gi|283548474|gb|GG730303.1| GENE 374 395947 - 396678 400 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086625|ref|ZP_06356290.2| ## NR: gi|291086625|ref|ZP_06356290.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 36 243 1 208 208 311 100.0 3e-83 MTDMVTTNSSQTSGIVTQGTSATSGSLSSTPLNTRMAMRAAFAELAETACELRNSNLEAA NTQTVNSWDQQVSSFNKQRESASKMMKSSLLAGAGEVVGGAISTALSIGGPQIAKGVSKT ERNARRAVQEEAKNLSGESLNSFMKLNEKKLTPHRNFEILGQCSPAIGQLVSQPFSIAGS VIGSGAKKLDSVAEFDKFISNNAQKDAKQYEEAGKSISNRIASAAKMAESFNEGITRALS AAA >gi|283548474|gb|GG730303.1| GENE 375 396735 - 396950 260 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086626|ref|ZP_06356291.2| ## NR: gi|291086626|ref|ZP_06356291.2| type III secretion apparatus needle protein [Citrobacter youngae ATCC 29220] type III secretion apparatus needle protein [Citrobacter youngae ATCC 29220] # 1 71 7 77 77 105 100.0 1e-21 MGIESVNSELAVNASSSWANVQNNMSAAALNNPLDMLRIQEWAQQYSTAVQLDSSIIKMF KDLLSGITSKI >gi|283548474|gb|GG730303.1| GENE 376 396980 - 397213 127 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836551|ref|ZP_06356292.1| ## NR: gi|283836551|ref|ZP_06356292.1| hypothetical protein CIT292_11035 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11035 [Citrobacter youngae ATCC 29220] # 1 77 11 87 87 134 100.0 2e-30 MIDCLFIAAQNKMLYEVDAIISALPLVIVDENDRILCESLCHIVSGGKSQELQSISVLSP ELCERLRFFSNMLEKDI >gi|283548474|gb|GG730303.1| GENE 377 397214 - 397582 115 122 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836552|ref|ZP_06356293.1| ## NR: gi|283836552|ref|ZP_06356293.1| putative type III secretion apparatus [Citrobacter youngae ATCC 29220] putative type III secretion apparatus [Citrobacter youngae ATCC 29220] # 1 122 1 122 122 199 100.0 7e-50 MDLSAISGSALKSLPASDAQAQISVPDIHEIEAFKNMMAGAQPVPEAGIVNAVQLQQAMF NDTIQKINPIMAADTVSGTKGDEVSNLLNTQYGLFNLSFSLDLTAKIAGQFSQAVNKLTS MQ >gi|283548474|gb|GG730303.1| GENE 378 397684 - 398322 414 212 aa, chain + ## HITS:1 COG:YPO0263 KEGG:ns NR:ns ## COG: YPO0263 COG4669 # Protein_GI_number: 16120601 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, lipoprotein EscJ # Organism: Yersinia pestis # 1 206 36 242 243 164 40.0 9e-41 MAVLLLARHIDVDKKVNKDGLFSLSIDKADFASAVEILRLHGYPQKKYRSVEDVFPSDQL VTSPGQELSKIIYLKEQGLERMLADMDGVISTRVVIAQPLNTDDDADKAMTSVAVFIKYA PENNLQNSLTQIKGLVHDSIPDLSYDKISIVLQPINYIKTTDVSASRDILGNWWRIYGFW VVTCMVGCAWFIFLCLIIYGKIKQRRIVDLEE >gi|283548474|gb|GG730303.1| GENE 379 398326 - 398928 285 200 aa, chain + ## HITS:1 COG:no KEGG:CV_2589 NR:ns ## KEGG: CV_2589 # Name: not_defined # Def: hypothetical protein # Organism: C.violaceum # Pathway: not_defined # 1 200 1 195 195 77 29.0 4e-13 MSMTYDSEHVELHRLFIRPGKYLHTQYWEESKLAAWCNDYQNFSALQPEIDRQLRAWLGW KWPDEVIVLSHRQRHWIRWMGRLPVLLTALGLIHLRCPDYLFLGEYRQHFIALFGNRVLN QIVALWKGGDEDPEVVPDDLPEYAFIIGLQLFSQLVCGDWVGQMIVTTLPLIESHLVPEP VGYFSHEGIDCELMRLGRFL >gi|283548474|gb|GG730303.1| GENE 380 398946 - 399626 563 226 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836555|ref|ZP_06356296.1| ## NR: gi|283836555|ref|ZP_06356296.1| hypothetical protein CIT292_11039 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11039 [Citrobacter youngae ATCC 29220] # 1 226 6 231 231 391 100.0 1e-107 MLFGLPIERLVYAPEPTAVVLSPDKLAQLLGVDTDIGMARQAAARNIRSARQRHRRLVIA RERRFAVQQEEQRERLENEHTLQYRQLVSSAIQWMIEEQKLEQHLYEAAMNKAREWAMEI LKIWGEEANLDEGIFRRVKAMHSRLSKESDLTLTVPPGEMAEMLLSQEQSAHAEYRIAID DLMSPGQAKLGNTLVQVSIDMHQELDDVLMQLRSLPVYTAVCEEHE >gi|283548474|gb|GG730303.1| GENE 381 399652 - 400674 484 340 aa, chain + ## HITS:1 COG:no KEGG:CV_2590 NR:ns ## KEGG: CV_2590 # Name: ssaL # Def: secretion system apparatus # Organism: C.violaceum # Pathway: not_defined # 38 340 62 365 368 156 34.0 1e-36 MWHGQTRDELERKIEVRQESRRSSVGNEAAVAVSEMQEVAMQDTMEDMSLVLGNRLKGKS RQPFGGDDEKIQRDEMLSSLAEQVAGEKLDSMLAGLQHSGMQDDLLNLYRQGEMNFSDAA LLLAAGASALPLGSKRRKQLSSQLDELLAEQEDWALLMFADLELGSVNQNALQAMQQIVR RHHKPDQEENPEGLWQWFNKIKDWTDRSRRIRVLLRTFAFELSSAQTNEVTARLVTTLLD LKKLLVFLGLEDTARRLANVALIPQDEALSEVLLLIEQRWMYTEWLGNRLQQLKIQEGKQ VLYLIRLNEIVKFLPDICFLDVQQRKQISETIEEYIYQLS >gi|283548474|gb|GG730303.1| GENE 382 401082 - 403124 930 680 aa, chain + ## HITS:1 COG:YPO0266 KEGG:ns NR:ns ## COG: YPO0266 COG4789 # Protein_GI_number: 16120604 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscV # Organism: Yersinia pestis # 2 678 3 676 682 610 52.0 1e-174 MKSITLSGLEKIGKYQGAILAIILVLAVFMMILPLPTAIVDILIAFNLMFSLVLLMVVVY LNSAVEFSVFPSLLLITTLYRLSLTVSTSRLILLQHDAGDIVYAFGKFVVGGNLTVGLII FSIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDLRAGSITTEQAAMRREMVQ HESKLYGSMDGAMKFVKGDAIASIIVILVNIFGGMAIGIMHEGMSASEALSTYSILSVGD GLVAQIPALLISITAGVLVTRVPGVSGKTNLASELFNQLGNRSMPLIISSGVLIIFSLIP GFPATVFLPMALVIGIIAYLLYRRGDNNSEDYGACKNSKDDISLSPGVEPLLVKITQDID ESALVTALESLRWSFFERFGIALGTIKIEKLSDNDASDISSIIFCIYHEQVAKLELNSAC LYLLKPGLVVEDAPSGLTKKSLLPGFDLIWLDEAAKNRVLEQGFSVYEIPRAIACCMEHI LERHAKEFIGVQETRYLMDSMEINYAELVKELQRQVQLNRVTDVLQRLVEEGISIRDLRT IFETLIIWAAKEKDLVTLTEYVRVALKRQIVNRHLHGGPSKMWIIGTNIEGLIRESIRQT VAGAYSAMEPEVNQKILAQIGLELGRHTQGVLLTAIDVRRYLRKIIEVEHYAFSVLSFME VSNMESFDVMGGIDLIGDAN >gi|283548474|gb|GG730303.1| GENE 383 403670 - 404449 272 259 aa, chain + ## HITS:1 COG:YPO0267 KEGG:ns NR:ns ## COG: YPO0267 COG1157 # Protein_GI_number: 16120605 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Flagellar biosynthesis/type III secretory pathway ATPase # Organism: Yersinia pestis # 1 240 182 421 445 322 68.0 5e-88 MLCDGVEADVIVLALVGERGREVREFLEFTLSENARARCVTIVATSERPALERLKASFVA TTIAEYFRDRGKNVVLMIDSLTRYARAAREVGLSSGEPPVASGFPPSVFATLPRLLERAG NGKVGSITGFYTVLVEGDNMNEPVADEVRSILDGHIVLSRKLAEANHYPAIDVSASVSRV MRQIATPEHVDLAGYLRKLLALYREIELLVRVGEYKQGQDLEADKALRCWPEIQRFLQQN AGSGLSIPETLTILNAVLE >gi|283548474|gb|GG730303.1| GENE 384 404458 - 404844 234 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836560|ref|ZP_06356301.1| ## NR: gi|283836560|ref|ZP_06356301.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 128 1 128 128 163 100.0 3e-39 MLHQLLSIKKRREQALRNEMASNQTLQQQKSQDIQELKKNQNKLREDWCLCAKFVGKIER KEFLSLQEELCAFQRQDEKMTHQLQNNMAELRMLVARENELRYELKAVLVSQEKVNYIIN ENEINVGQ >gi|283548474|gb|GG730303.1| GENE 385 405399 - 406151 12 250 aa, chain + ## HITS:1 COG:no KEGG:YE105_C0336 NR:ns ## KEGG: YE105_C0336 # Name: not_defined # Def: type III secretion system apparatus protein # Organism: Y.enterocolitica_palearctica # Pathway: not_defined # 3 250 59 313 315 70 25.0 7e-11 MRWLEEKLPHDGLQSSDKELLRLTSIWGWLQVSDELVNAELSTLDAPVEAGVLPGWYPAL TLNRNEQKLDLFLLDWPSEVLRKFTHGWSALASASVQPRLSCPLILGWQELTYEQLRTCV PGAVLILPSHLEFGEKSCWLLAAETRIKLFIEQGKYTVSEIEQNVEDHIVQSHSPLNSLG DVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTP AVRIDKLLLR >gi|283548474|gb|GG730303.1| GENE 386 406358 - 406807 254 149 aa, chain + ## HITS:1 COG:PA1693 KEGG:ns NR:ns ## COG: PA1693 COG4790 # Protein_GI_number: 15596890 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscR # Organism: Pseudomonas aeruginosa # 1 149 67 215 217 149 51.0 2e-36 MAPVGMQINDNVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQTW PKKYQERLNKNSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMVSP TTISLPFKIMLFIIAGGWQFLIEKLVLSF >gi|283548474|gb|GG730303.1| GENE 387 406820 - 407080 190 86 aa, chain + ## HITS:1 COG:ECs4582 KEGG:ns NR:ns ## COG: ECs4582 COG4794 # Protein_GI_number: 15833836 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscS # Organism: Escherichia coli O157:H7 # 12 84 12 84 89 67 50.0 6e-12 MSDSVIAHFGEELLWIVVMLSLPTVVAASVVGVLISLIQAVTQIQDQTVQFLIKLVVVSV VLVMTYNWMGNVLLSYTHLIFQQIGR >gi|283548474|gb|GG730303.1| GENE 388 407401 - 407880 103 159 aa, chain + ## HITS:1 COG:STM1421 KEGG:ns NR:ns ## COG: STM1421 COG4791 # Protein_GI_number: 16764771 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscT # Organism: Salmonella typhimurium LT2 # 1 139 102 240 259 126 45.0 2e-29 MDTMRGSSMGNIYNPTLAESSTLLGVFFSQLFTVIFFVCGGMNQLITTLYQSYVLFPPGE SISFNRHLLDFVVQQWNMLFVLFLHFSIPAAAVMLLTDVGMGLLNRSAQQLNVFFLAMSV KSILALIVLMITIAFSLDYVRETLLRNLYSISTLWENIL >gi|283548474|gb|GG730303.1| GENE 389 408522 - 408920 104 132 aa, chain + ## HITS:1 COG:YPO0273 KEGG:ns NR:ns ## COG: YPO0273 COG4792 # Protein_GI_number: 16120612 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type III secretory pathway, component EscU # Organism: Yersinia pestis # 1 129 216 344 355 131 45.0 3e-31 MSHEEVKQEYKEMEGSAEVKSHRKSLHQEIQSGSLANTVKKSSAVIRNPTHLAICIYYDE NITPLPVITAKGADLIARYIVDIAEKAGVPVIENVPLARGLNKEIKTGDYISPPFFSAIS EILLLIKEFSVR >gi|283548474|gb|GG730303.1| GENE 390 409008 - 410042 405 344 aa, chain + ## HITS:1 COG:YPO1435 KEGG:ns NR:ns ## COG: YPO1435 COG2885 # Protein_GI_number: 16121713 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Yersinia pestis # 29 315 21 314 353 167 36.0 4e-41 MNRMNISNHFIKSMVLLTTFYSIPFAVMASTSSDGLYAGANMGWSQYYNNNDFTRGHENN DIGVGGYIGYQLNPYFSLENGILILGDAEGDKNSSMTVQGYQLSGKISYPVSNTDIYTRL GGMWYRSDYTRDDTNDSKVGTGIAPLISLGIEYAWNYNITSRVEYQWVGNIKNDAATSAN VDNGLLSVGFSYHFGAQSSPSTTAVAMHQEQPAAAPVVPQSSQELSLFYGFNEYTLTHAN QQKIIDYFHDLAKHNGSVNNIKLSLHGYSDTLGSEKNNNFISKKRAEGVKKFLLLLGMRE ENITVKPEGSTSKFTEQLNGSADKETEQSVKALAKNRQTLIISY >gi|283548474|gb|GG730303.1| GENE 391 410661 - 411125 143 154 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086631|ref|ZP_06571594.1| ## NR: gi|291086631|ref|ZP_06571594.1| hypothetical protein CIT292_11052 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11052 [Citrobacter youngae ATCC 29220] # 1 154 163 316 316 290 100.0 2e-77 MYSKENDGSIHHVQKTKDALVSQTVRIFENTLQKNAGNLMAEVQEKIAFRKIKDLFLNTG VTDNKKIVLADMTEDSIKSHILNNIPQVSDINFYDDDSGETIEPPSFMRSIDVKLKTGDS IKIKFGIDDSDRIMVKKIKSNDMVNVSQYRYGFS >gi|283548474|gb|GG730303.1| GENE 392 411528 - 412139 -8 203 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086632|ref|ZP_06356311.2| ## NR: gi|291086632|ref|ZP_06356311.2| hypothetical protein CIT292_11053 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11053 [Citrobacter youngae ATCC 29220] # 1 203 30 232 232 396 100.0 1e-109 MQATLETALLASLAKDVKSHLNIIIHTNNPPTPLCADIISDSLFSASNKNDLAVLSTVTS RVYTAAQFLNAGCQVNFCSLYGSERSSPAEQECFDKKIADHAGCFALHTHEDPPVELSGA TYVFTNGQGDKLTLGVRITQANVYSEQCSLFISNEKNRGNVENYLRSLHDYISQVSANQC IDSTVKNKIAVYELMALQRTIGY >gi|283548474|gb|GG730303.1| GENE 393 412197 - 412607 131 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836571|ref|ZP_06356312.1| ## NR: gi|283836571|ref|ZP_06356312.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 136 1 136 136 232 100.0 8e-60 MDMIIGKLLQDIIVDFGGDISLASGIVASHSVVIEFSELQSIFISSLNGSITLSSIITNE HNHKLYSTLPSSILEITATMGILFSRDGDIRFTIQGGNLEIATELDARHSGSPQELSEAI TAFSYVVAELFQYFNK >gi|283548474|gb|GG730303.1| GENE 394 412628 - 413179 163 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086633|ref|ZP_06356313.2| ## NR: gi|291086633|ref|ZP_06356313.2| hypothetical protein CIT292_11055 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11055 [Citrobacter youngae ATCC 29220] # 8 183 1 176 176 333 100.0 5e-90 MLGKVSRMFMRNDYEINTASHSPKTFFSFHMLLNKLKGVKACDAVKLQGHTKGVVLKCTN NAGTSNMHEVGYNIGLSCFSMNAQNLISELKKGTPETESFRKVVTNITGILSNMPISKQK ECSDIRQLYDTKITSDGGKSISFKDLGDSDKNDGLTIEERKKAIKITEKLIGIIAPLRDS NVL >gi|283548474|gb|GG730303.1| GENE 395 413194 - 414195 348 333 aa, chain - ## HITS:1 COG:YPO2879 KEGG:ns NR:ns ## COG: YPO2879 COG0821 # Protein_GI_number: 16123071 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Yersinia pestis # 1 333 33 365 375 516 76.0 1e-146 MTNTNTCDVKSTVQQIHALEAAGADLVRVSVPSMAAAEAFNSIKKQSNVPLIADIHFDYR IALQVAAYGADCLRINPGNIGNEQRIRSVVDCARDLNIPIRIGINAGSLERDIQEKYGEP TPQALLESAMRHIDILEKLDFDNFKVSVKASDVFLAVNSYRLLAKEIAQPLHLGITEAGG LRAGSVKSAIGIGLLLSEGIGDTIRVSLAANPVEEVKVGFDILKSLRIRSRGINFIACPT CSRQEFDVISTVNQLEQRLEDIVTPLDVSIIGCVVNGPGEALVSSIGVAGSKANSAFYLQ GIRQKKRFNNQSIVDELEDEIRTLVEKINSQNK >gi|283548474|gb|GG730303.1| GENE 396 414332 - 414745 151 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|291086634|ref|ZP_06356315.2| ## NR: gi|291086634|ref|ZP_06356315.2| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 137 34 170 170 224 100.0 1e-57 MKQDDALSLHEENLATSLYKNVDRHKALSLLAESKAKILNTTSENPYIFNRRDEISLLKK IIYEQPITPTASAQGKLNACLERIDYAAKNAEKTRAEYQKVLAHLNAHQQSRFQFKENIL KIEQHVKYYINRQESTV >gi|283548474|gb|GG730303.1| GENE 397 415209 - 415814 212 201 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_3523 NR:ns ## KEGG: Rahaq_3523 # Name: not_defined # Def: fimbrial protein domain-containing protein # Organism: Rahnella_Y9602 # Pathway: not_defined # 16 200 15 194 195 140 44.0 3e-32 MFKKISWYKKNIAIVMACSSLSAAVWAGDADVGIITFTGGVTAETCKISTSNGTAASNMT LVMPVVAKDDISAATIDSGGVGRTFFDISLSNCGAGINDAKIAFSSEQFADVTDGTLRND DTMEGGAKNVNIVLFNNSNSQTSQVIIGRPDDTPQDAILTDSSGSFSFVAAYVPSAQYQS GTNEIVPGKISTNATFSISYY >gi|283548474|gb|GG730303.1| GENE 398 415847 - 416575 126 242 aa, chain + ## HITS:1 COG:ZecpD KEGG:ns NR:ns ## COG: ZecpD COG3121 # Protein_GI_number: 15799824 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, chaperone PapD # Organism: Escherichia coli O157:H7 EDL933 # 20 242 25 243 243 211 48.0 1e-54 MRSLPFAMCSLLFSLLPIYAQADIVLSGTRIIYPEGQSSVTVHLDNKGQHPLLVQTWLDD GEENKAPEQIQTPFILTPPITRIDAEHGQTVRILYTGGKLPEDQEKLYWFNVLEVPPKDK SHASENKLQLAFRTRIKFIYRPKSLNGDLESALKQVDWAFKNKGGKTFLSAKNNSPYYLS LDNGAVLIGGQKYTVNTSMLIPHGEVDFLVTAFSSADISKHGKITYSAINDFGGETSMEK TF >gi|283548474|gb|GG730303.1| GENE 399 417426 - 419768 619 780 aa, chain + ## HITS:1 COG:htrE KEGG:ns NR:ns ## COG: htrE COG3188 # Protein_GI_number: 16128132 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, porin PapC # Organism: Escherichia coli K12 # 11 778 90 863 865 618 42.0 1e-176 MVVFMTGDDGNVFPCVTEKVLTQLGVKYDLKGHKGFDSGGDTCFNLQAVIPDVKIDYNSE KQELNLFISQLYLNRQPDGYIDPALWDPGIVAGILSYDANAYHSASSQDTNDSIYAGLKY GLNLGNWRLRSRGSVNWESGENSKYNSQDAYLQRDIATLKSQLILGQSSTRGDTFDSIAV KGVHLYNDDRMLTSSETGYAPVVNGVANTNAKVTIRQNGNIIKQLTVPPGPFAITDIYPS GFGNDLDVTVTEADGKEQHFSVPFSSVSQLLRKGNVRWEAAVGQLDQEGLYHQPNVATAS AYYGLTNQFTAYAGFQFTDEQYSEFLLGGAFNTWLGAMAFDATQSRATLPGLSQWTGNSY RLTYSEQFSQSLTSLNIAAYRYATEHYLSLSDAVSVHDQLENTRNQQDWVLSDYQRIKDK LQVNISQPLNYRQRDYGSLYVTGSWNKYWSEEHDVQYSLGYSNAFFWGTYSITAQRSYDQ NNNTDDSLYLSFNIPLDNLSPSYNSSTGFSNINVGMSKDSNGSSQMDTSASGNTEDNVYN YSVNASYAAESQQSGDDIAQVGGYGSYNSRFGPWNASVSSSSDGNKQSSIGASGGIVLHH GGVTFVPDSIDAANTMALVSAPGAQGSHVGSGSGEIDGNGYAVVTNLSPYHQNMVSLDIS KLDDSVELENTGTSVIPDAGAVLLVSFKTKVGTPYIFDLLLDNGAFIPFGADVYNDKHEW LGNVGQGGKVFLRGMNPVGSLTIVWGKAPGQSCTAHYHLPEASSEGHANTLLPPLTCKTP >gi|283548474|gb|GG730303.1| GENE 400 419801 - 420385 288 194 aa, chain + ## HITS:1 COG:yadM KEGG:ns NR:ns ## COG: yadM COG3539 # Protein_GI_number: 16128131 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli K12 # 8 194 25 203 203 63 27.0 2e-10 MKICVVNILLGLLMIVGESAANIGYADLTTNVYFVATIKSSTCQMSLEGGTAGGGDSYTI PVGSNGKVGAIDIINGTENAMANFSLDIIECDDGISKINVTVSGTPSSTVSTALKNNHDV NAGGAENVGLTIARQSAMDSPFVINSTLDSERLVWTATEISNKAVPLVARLVKTSDKITA GDFSTIATFNFTYE >gi|283548474|gb|GG730303.1| GENE 401 420410 - 420967 369 185 aa, chain + ## HITS:1 COG:no KEGG:Rahaq_3527 NR:ns ## KEGG: Rahaq_3527 # Name: not_defined # Def: fimbrial protein domain-containing protein # Organism: Rahnella_Y9602 # Pathway: not_defined # 3 185 2 189 189 89 30.0 8e-17 MSRPQQLIMIFAMMFFSVNVFAITGTTSLMATFNSTVTSGTCKSMLHDAHGDPSQTLDFG DIYITDIASGPTEKFAISLTECQAVSKVVVTADASSECSGDSHQGAGFANSNGDARGVSV ELWSGDAGTGEQFICSNLQGQEFAIAGDAVDLPMSARLAIAEGYNPGTLMAGSFDTTLTL LVTYQ >gi|283548474|gb|GG730303.1| GENE 402 421036 - 421524 140 162 aa, chain + ## HITS:1 COG:no KEGG:ECL_00937 NR:ns ## KEGG: ECL_00937 # Name: not_defined # Def: putative fimbrial protein # Organism: E.cloacae # Pathway: not_defined # 18 156 30 176 201 94 41.0 2e-18 MLFISCFSAITYADDQPLSLNVHANIINNSCKVTVSGSGSLDLGKESKAGIEAANSVTDY IGGGKTFSITVSECSSFTGGSLSKLHFGFSPQTGEFPTQTSQVFINESSPQAGGASGVGL VIFSEQQMANVLDTSGHSDVAFEVTPDSYLSSFCFFCALTKN >gi|283548474|gb|GG730303.1| GENE 403 421575 - 422648 187 357 aa, chain + ## HITS:1 COG:ECs0139 KEGG:ns NR:ns ## COG: ECs0139 COG3539 # Protein_GI_number: 15829393 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: P pilus assembly protein, pilin FimA # Organism: Escherichia coli O157:H7 # 102 356 109 368 369 70 26.0 4e-12 MNKTSYFLKCPVGICIFIAAIYSAKSTAATECYFVHNGTDTLSFGDIGSVSPTGQVTSVV TLLSSIKDSSHAPSTDCNVGQGADDLMSKQNGSALGEKGPGGEALFQTNVPGLVYSIKFK MDNTPPEGYIVPSTDWAVIYNVDDSDDKNDFKNGRTGHYYLQVYQTPDYQPGAGHTVTPQ PNTIGQFQVGDSGGTIRTISMTNSSFTLTVPQPTCKQVVLNSSSTTSGNQVSLGDDYVAS ELKGNKSPRDIPFSVTLTGCAGVNHLRAVLSSGSVSDTSNSMLADVDNKNMGVGVQISGS NKIALIPNDSNSYYSIQDSATPDTRVMNFYATLMDDGRGTITTGAFKAMGTFTFTYY Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:52:43 2011 Seq name: gi|283548473|gb|GG730304.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld5, whole genome shotgun sequence Length of sequence - 138483 bp Number of predicted genes - 128, with homology - 125 Number of transcription units - 80, operones - 25 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 289 - 364 59.8 # Glu TTC 0 0 - LSU_RRNA 530 - 838 94.0 # CFU77928 [D:1..2906] # 23S ribosomal RNA # Citrobacter freundii # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter. - TRNA 1140 - 1215 59.8 # Glu TTC 0 0 - SSU_RRNA 1302 - 2257 98.0 # EF088361 [D:1..1506] # 16S ribosomal RNA # Cronobacter sakazakii # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter. + Prom 2922 - 2981 2.9 1 1 Op 1 9/0.038 + CDS 3143 - 4636 1106 ## COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism 2 1 Op 2 3/0.615 + CDS 4633 - 5352 269 ## PROTEIN SUPPORTED gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 + Term 5363 - 5425 1.2 3 2 Op 1 4/0.462 + CDS 6069 - 7409 1558 ## COG2704 Anaerobic C4-dicarboxylate transporter 4 2 Op 2 3/0.615 + CDS 7506 - 9152 493 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Prom 9220 - 9279 2.7 5 3 Tu 1 . + CDS 9301 - 9933 590 ## COG3647 Predicted membrane protein + Prom 10039 - 10098 6.6 6 4 Tu 1 . + CDS 10217 - 12484 2044 ## COG1982 Arginine/lysine/ornithine decarboxylases + Term 12582 - 12612 3.3 + Prom 12601 - 12660 4.2 7 5 Tu 1 . + CDS 12799 - 13560 396 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 13599 - 13658 3.4 8 6 Tu 1 . + CDS 13688 - 15025 1444 ## COG0531 Amino acid transporters + Term 15065 - 15104 6.1 + Prom 15051 - 15110 1.7 9 7 Op 1 3/0.615 + CDS 15142 - 16779 1571 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 10 7 Op 2 40/0.000 + CDS 16784 - 17452 745 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 11 7 Op 3 . + CDS 17453 - 18535 1116 ## COG0642 Signal transduction histidine kinase + Term 18623 - 18660 7.1 12 8 Tu 1 . - CDS 18529 - 18618 83 ## - Prom 18687 - 18746 2.8 - Term 18691 - 18733 4.7 13 9 Tu 1 . - CDS 18764 - 20266 1868 ## COG0477 Permeases of the major facilitator superfamily - Prom 20454 - 20513 3.8 + Prom 20886 - 20945 4.8 14 10 Tu 1 . + CDS 20965 - 21963 1220 ## CKO_03757 2-keto-3-deoxygluconate permease 15 11 Op 1 . - CDS 21994 - 22884 581 ## CKO_03758 hypothetical protein 16 11 Op 2 . - CDS 22881 - 25238 1918 ## COG0699 Predicted GTPases (dynamin-related) - Prom 25287 - 25346 9.9 + Prom 25656 - 25715 4.1 17 12 Tu 1 . + CDS 25778 - 26113 415 ## COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism + Term 26123 - 26165 7.1 18 13 Tu 1 . + CDS 26232 - 26678 500 ## COG2764 Uncharacterized protein conserved in bacteria + Prom 26730 - 26789 1.6 19 14 Op 1 15/0.000 + CDS 26811 - 27599 257 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 20 14 Op 2 8/0.038 + CDS 27623 - 28639 1177 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Prom 28664 - 28723 3.3 21 15 Op 1 3/0.615 + CDS 28765 - 29544 1024 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 22 15 Op 2 5/0.154 + CDS 29565 - 30290 783 ## COG2188 Transcriptional regulators 23 15 Op 3 9/0.038 + CDS 30291 - 30743 524 ## COG3624 Uncharacterized enzyme of phosphonate metabolism 24 15 Op 4 8/0.038 + CDS 30740 - 31324 704 ## COG3625 Uncharacterized enzyme of phosphonate metabolism 25 15 Op 5 8/0.038 + CDS 31324 - 32391 1111 ## COG3626 Uncharacterized enzyme of phosphonate metabolism 26 15 Op 6 7/0.038 + CDS 32381 - 33229 1024 ## COG3627 Uncharacterized enzyme of phosphonate metabolism 27 15 Op 7 7/0.038 + CDS 33226 - 33984 367 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 + Prom 34018 - 34077 3.0 28 16 Op 1 6/0.038 + CDS 34204 - 34890 228 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 29 16 Op 2 7/0.038 + CDS 34887 - 36023 1202 ## COG3454 Metal-dependent hydrolase involved in phosphonate metabolism 30 16 Op 3 3/0.615 + CDS 36026 - 36580 490 ## COG3709 Uncharacterized component of phosphonate metabolism 31 16 Op 4 3/0.615 + CDS 36567 - 37001 446 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 32 16 Op 5 . + CDS 37010 - 37768 688 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 33 16 Op 6 . + CDS 37837 - 38322 127 ## Ent638_0293 putative inner membrane protein 34 16 Op 7 . + CDS 38389 - 38640 235 ## gi|283836615|ref|ZP_06356356.1| hypothetical protein CIT292_11107 + Term 38658 - 38691 6.1 35 17 Op 1 . + CDS 38804 - 38941 176 ## SNSL254_A0174 low molecular weight phosphotyrosine protein phosphatase 36 17 Op 2 3/0.615 + CDS 39019 - 39270 262 ## COG2161 Antitoxin of toxin-antitoxin stability system 37 17 Op 3 . + CDS 39267 - 39554 131 ## COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system - Term 39350 - 39392 -1.0 38 18 Op 1 . - CDS 39551 - 39865 224 ## UTI89_C4686 hypothetical protein - Prom 39887 - 39946 2.3 39 18 Op 2 . - CDS 39949 - 40581 450 ## CKO_03781 hypothetical protein - Prom 40617 - 40676 2.9 40 19 Tu 1 . - CDS 40757 - 43030 2315 ## COG0642 Signal transduction histidine kinase - Prom 43050 - 43109 3.5 + Prom 43047 - 43106 1.8 41 20 Op 1 5/0.154 + CDS 43145 - 44668 188 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 42 20 Op 2 5/0.154 + CDS 44661 - 45656 1367 ## COG4158 Predicted ABC-type sugar transport system, permease component 43 20 Op 3 3/0.615 + CDS 45686 - 46627 1175 ## COG1879 ABC-type sugar transport system, periplasmic component + Prom 46657 - 46716 5.1 44 21 Op 1 4/0.462 + CDS 46747 - 47430 754 ## COG3822 ABC-type sugar transport system, auxiliary component 45 21 Op 2 4/0.462 + CDS 47445 - 48305 1098 ## COG0191 Fructose/tagatose bisphosphate aldolase 46 21 Op 3 . + CDS 48305 - 49306 1048 ## COG0524 Sugar kinases, ribokinase family - Term 49339 - 49376 2.2 47 22 Tu 1 . - CDS 49450 - 50181 712 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 48 23 Op 1 . + CDS 50210 - 50374 73 ## gi|291086655|ref|ZP_06571605.1| hypothetical protein CIT292_11123 49 23 Op 2 5/0.154 + CDS 50470 - 50889 412 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing 50 23 Op 3 4/0.462 + CDS 50938 - 52617 1970 ## COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing + Term 52629 - 52661 5.0 + Prom 52625 - 52684 5.3 51 24 Tu 1 . + CDS 52709 - 53392 702 ## COG0790 FOG: TPR repeat, SEL1 subfamily 52 25 Tu 1 . - CDS 53543 - 54853 1908 ## COG1301 Na+/H+-dicarboxylate symporters - Prom 55037 - 55096 3.8 53 26 Op 1 9/0.038 - CDS 55197 - 55817 604 ## COG4235 Cytochrome c biogenesis factor 54 26 Op 2 7/0.038 - CDS 55814 - 56323 362 ## COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes 55 26 Op 3 5/0.154 - CDS 56316 - 57980 1744 ## COG1138 Cytochrome c biogenesis factor 56 26 Op 4 8/0.038 - CDS 58052 - 59008 1273 ## COG3301 Formate-dependent nitrite reductase, membrane component 57 26 Op 5 . - CDS 59005 - 59676 461 ## COG0437 Fe-S-cluster-containing hydrogenase components 1 58 26 Op 6 . - CDS 59673 - 60239 429 ## SPAB_05273 cytochrome c nitrite reductase pentaheme subunit 59 26 Op 7 . - CDS 60284 - 61720 1651 ## COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit - Prom 61872 - 61931 4.5 60 27 Tu 1 . + CDS 62154 - 64112 2207 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 61 28 Op 1 10/0.000 + CDS 64350 - 64664 343 ## COG3162 Predicted membrane protein 62 28 Op 2 . + CDS 64661 - 66310 2209 ## COG4147 Predicted symporter + Term 66320 - 66355 6.5 - Term 66214 - 66251 -0.9 63 29 Op 1 23/0.000 - CDS 66356 - 67045 910 ## COG1346 Putative effector of murein hydrolase 64 29 Op 2 . - CDS 67038 - 67448 365 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 67473 - 67532 5.5 65 30 Tu 1 . + CDS 67547 - 68440 242 ## PROTEIN SUPPORTED gi|30995401|ref|NP_438934.2| transcriptional regulator - Term 68432 - 68472 1.1 66 31 Tu 1 . - CDS 68514 - 68873 97 ## COG1943 Transposase and inactivated derivatives 67 32 Tu 1 . - CDS 69461 - 71080 1962 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 71158 - 71217 6.6 68 33 Tu 1 . + CDS 71088 - 71288 89 ## gi|291086662|ref|ZP_06571610.1| hypothetical protein CIT292_11145 - Term 71205 - 71237 4.1 69 34 Tu 1 . - CDS 71264 - 72613 1880 ## COG2252 Permeases - Prom 72772 - 72831 8.1 - Term 72917 - 72968 2.1 70 35 Op 1 . - CDS 72992 - 73156 84 ## 71 35 Op 2 . - CDS 73218 - 73676 381 ## COG0789 Predicted transcriptional regulators - Prom 73700 - 73759 3.8 + Prom 73662 - 73721 5.7 72 36 Tu 1 . + CDS 73763 - 74086 295 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 74089 - 74136 -0.9 73 37 Tu 1 . - CDS 74089 - 75675 956 ## COG4943 Predicted signal transduction protein containing sensor and EAL domains + Prom 75917 - 75976 10.6 74 38 Tu 1 . + CDS 76225 - 76506 333 ## ROD_34441 hypothetical protein + Term 76591 - 76621 -1.0 - Term 76504 - 76550 6.0 75 39 Tu 1 . - CDS 76574 - 77098 657 ## COG0629 Single-stranded DNA-binding protein - Prom 77137 - 77196 4.0 + Prom 77205 - 77264 4.9 76 40 Tu 1 . + CDS 77350 - 80172 3325 ## COG0178 Excinuclease ATPase subunit + Term 80321 - 80350 -0.9 77 41 Tu 1 . - CDS 80313 - 80669 361 ## COG2315 Uncharacterized protein conserved in bacteria - Prom 80710 - 80769 4.1 78 42 Tu 1 . - CDS 80796 - 81509 725 ## COG3700 Acid phosphatase (class B) - Prom 81538 - 81597 6.2 - Term 81542 - 81575 -0.2 79 43 Tu 1 . - CDS 81753 - 82946 1215 ## COG1448 Aspartate/tyrosine/aromatic aminotransferase 80 44 Tu 1 . - CDS 83076 - 84155 1186 ## COG0787 Alanine racemase - Prom 84178 - 84237 2.1 81 45 Tu 1 . - CDS 84301 - 85716 1486 ## COG0305 Replicative DNA helicase - Prom 85746 - 85805 3.8 + Prom 85667 - 85726 2.0 82 46 Tu 1 . + CDS 85781 - 86764 986 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 86827 - 86876 8.7 - Term 86819 - 86860 7.0 83 47 Tu 1 . - CDS 86992 - 87234 360 ## ECIAI39_4470 phage shock protein G - Prom 87294 - 87353 3.1 - Term 87301 - 87337 5.0 84 48 Tu 1 . - CDS 87368 - 88366 1086 ## COG0042 tRNA-dihydrouridine synthase - Prom 88397 - 88456 2.6 - Term 88405 - 88441 1.4 85 49 Tu 1 . - CDS 88474 - 88962 445 ## COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain - Prom 89025 - 89084 2.4 + Prom 88989 - 89048 1.8 86 50 Tu 1 . + CDS 89077 - 89595 393 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 87 51 Tu 1 . - CDS 89637 - 89846 398 ## COG3237 Uncharacterized protein conserved in bacteria - Prom 89915 - 89974 2.8 88 52 Tu 1 . - CDS 89978 - 91303 1559 ## COG0534 Na+-driven multidrug efflux pump 89 53 Tu 1 . - CDS 91434 - 92042 664 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 92070 - 92129 7.3 90 54 Tu 1 . - CDS 92152 - 92520 474 ## COG0818 Diacylglycerol kinase - Prom 92721 - 92780 4.0 + Prom 92461 - 92520 5.7 91 55 Tu 1 . + CDS 92692 - 95112 2628 ## COG2937 Glycerol-3-phosphate O-acyltransferase + Term 95124 - 95150 1.0 - Term 95093 - 95160 8.0 92 56 Op 1 6/0.038 - CDS 95165 - 96037 1089 ## COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 93 56 Op 2 . - CDS 96051 - 96548 578 ## COG3161 4-hydroxybenzoate synthetase (chorismate lyase) - Prom 96637 - 96696 5.1 - Term 96664 - 96695 3.2 94 57 Tu 1 . - CDS 96729 - 97673 924 ## CKO_03878 maltose regulon periplasmic protein - Term 97727 - 97756 2.8 95 58 Op 1 5/0.154 - CDS 97787 - 99130 1566 ## COG4580 Maltoporin (phage lambda and maltose receptor) 96 58 Op 2 . - CDS 99222 - 100331 1174 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 100547 - 100606 2.3 + Prom 100506 - 100565 3.9 97 59 Op 1 19/0.000 + CDS 100692 - 101882 1702 ## COG2182 Maltose-binding periplasmic proteins/domains + Prom 101922 - 101981 7.0 98 59 Op 2 20/0.000 + CDS 102013 - 103557 2100 ## COG1175 ABC-type sugar transport systems, permease components 99 59 Op 3 3/0.615 + CDS 103572 - 104462 1234 ## COG3833 ABC-type maltose transport systems, permease component + Term 104545 - 104575 3.0 + Prom 104641 - 104700 5.2 100 60 Tu 1 . + CDS 104787 - 106262 1519 ## COG0477 Permeases of the major facilitator superfamily + Term 106273 - 106315 10.0 - Term 106263 - 106300 5.7 101 61 Tu 1 . - CDS 106308 - 106718 577 ## COG3223 Predicted membrane protein - Prom 106774 - 106833 4.2 + Prom 106744 - 106803 4.2 102 62 Op 1 . + CDS 106858 - 107367 384 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 103 62 Op 2 . + CDS 107381 - 107833 343 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Term 107845 - 107894 2.6 104 63 Op 1 . - CDS 107919 - 110015 2197 ## CKO_03888 hypothetical protein 105 63 Op 2 . - CDS 110015 - 110752 648 ## CKO_03889 hypothetical protein 106 63 Op 3 . - CDS 110749 - 111387 564 ## ROD_37231 putative lipoprotein - Prom 111432 - 111491 2.5 - Term 111454 - 111487 4.0 107 64 Tu 1 . - CDS 111506 - 111748 182 ## - Prom 111875 - 111934 8.2 - Term 112171 - 112201 0.2 108 65 Tu 1 . - CDS 112221 - 113867 2229 ## COG0166 Glucose-6-phosphate isomerase - Prom 114080 - 114139 8.2 109 66 Op 1 . + CDS 114304 - 115653 1813 ## COG0527 Aspartokinases + Term 115684 - 115713 1.1 + Prom 115660 - 115719 3.2 110 66 Op 2 . + CDS 115746 - 116672 1212 ## COG0385 Predicted Na+-dependent transporter + Prom 116736 - 116795 5.3 111 67 Tu 1 . + CDS 116818 - 117090 343 ## CKO_03896 hypothetical protein + Term 117106 - 117159 5.0 - Term 116837 - 116892 2.2 112 68 Tu 1 . - CDS 117087 - 117962 1022 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - Prom 118102 - 118161 4.0 113 69 Op 1 . - CDS 118211 - 118528 178 ## plu2279 cytotoxic protein CcdB 114 69 Op 2 . - CDS 118528 - 118821 233 ## CJA_3183 CcdB antidote CcdA 115 69 Op 3 . - CDS 118918 - 119283 417 ## ROD_16861 hypothetical protein + Prom 119309 - 119368 3.8 116 70 Tu 1 . + CDS 119425 - 119586 219 ## XBJ1_2654 hypothetical protein - Term 119630 - 119681 3.2 117 71 Op 1 5/0.154 - CDS 119745 - 120062 442 ## COG5606 Uncharacterized conserved small protein 118 71 Op 2 . - CDS 120052 - 120411 208 ## COG4679 Phage-related protein - Prom 120456 - 120515 3.1 + Prom 120359 - 120418 4.5 119 72 Tu 1 . + CDS 120625 - 121314 936 ## COG3340 Peptidase E + Term 121545 - 121586 0.3 120 73 Tu 1 . - CDS 121443 - 123071 1918 ## COG1283 Na+/phosphate symporter - Prom 123123 - 123182 6.4 - Term 123289 - 123325 7.1 121 74 Tu 1 . - CDS 123358 - 127041 4660 ## COG1410 Methionine synthase I, cobalamin-binding domain - Prom 127175 - 127234 5.4 + Prom 127137 - 127196 2.7 122 75 Tu 1 . + CDS 127236 - 128060 869 ## COG1414 Transcriptional regulator + Term 128149 - 128175 0.1 123 76 Tu 1 . - CDS 128105 - 129886 1740 ## COG4579 Isocitrate dehydrogenase kinase/phosphatase 124 77 Op 1 7/0.038 - CDS 129989 - 131308 1490 ## COG2224 Isocitrate lyase 125 77 Op 2 5/0.154 - CDS 131325 - 132926 1726 ## COG2225 Malate synthase - Prom 133076 - 133135 8.4 - Term 133121 - 133149 1.0 126 78 Tu 1 . - CDS 133195 - 134124 969 ## COG1897 Homoserine trans-succinylase - Prom 134170 - 134229 3.1 + Prom 134201 - 134260 5.4 127 79 Tu 1 . + CDS 134282 - 134719 404 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 134763 - 134803 3.5 - 5S_RRNA 134859 - 134987 99.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. - LSU_RRNA 135070 - 137426 98.0 # CFU77928 [D:1..2906] # 23S ribosomal RNA # Citrobacter freundii # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter. - TRNA 137563 - 137639 88.4 # Ile GAT 0 0 - 5S_RRNA 137712 - 137773 93.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. + Prom 137449 - 137508 80.3 128 80 Tu 1 . + CDS 137718 - 137909 61 ## COXBURSA331_A0274 hypothetical protein + 5S_RRNA 137840 - 137925 94.0 # AE017194 [D:4654188..4655695] # 5S ribosomal RNA # Bacillus cereus ATCC 10987 # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. - TRNA 138341 - 138416 59.8 # Glu TTC 0 0 Predicted protein(s) >gi|283548473|gb|GG730304.1| GENE 1 3143 - 4636 1106 497 aa, chain + ## HITS:1 COG:ECs5107 KEGG:ns NR:ns ## COG: ECs5107 COG3290 # Protein_GI_number: 15834361 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase regulating citrate/malate metabolism # Organism: Escherichia coli O157:H7 # 1 497 47 543 543 853 84.0 0 MTRDALADKALAVARTLANSPEIRQGLMKKPAESGIQAIAQAVNKSNDFLFIVVTDMQSI RYSHPEAQRIGQPFKGDDILLALQGKENVAINRGFLAKALRVFTPIYDEHHRQIGVVSIG LELSRVTEQINNSRGSIFWSILFGVLVGLLGTWVFVKVLKRILFGLEPYEISNLFEQRQA MLHSIKEGVIAVDASGEVTLINQAAQELLDYHKSQDDAQLSTLSHAWSQVVDFSQVLRDG TPRRDEEITVKDRLLLINTVPVLSNGKIIGAISTFRDKTEVRKLMQRLDGMVNYADALRE RSHEFMNKLHVILGLLHLKSYKQLENYILKTANNYQEEIGSLLGKIKSPVIAGFLLSKIN RTSDLGHSLVISNESQLPENSNEDQVAVLITVLGNLIENALEALGQEPGGEISVSLHYRH GWLHCEVNDDGPGIAPEHIEHIFEKGVSSKGTERGVGLALVKQQVESVGGNISVESEPGV FTQFFVQLPWNGERASR >gi|283548473|gb|GG730304.1| GENE 2 4633 - 5352 269 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149011191|ref|ZP_01832496.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP19-BS75] # 2 225 1 222 226 108 35 2e-22 MINVLIVDDDAMVAELNRRYVAQLSGFHCCGTASTLEKAKEIIFHSGHHIDLILLDIYMQ KENGLDLLPVLHSEGCKCDVIVISSAADATTIKDSLHYGVVDYLIKPFQASRFEEALTGW LHKKTEMEKHQYYEQSELDQLIHGSSSNEQEVRRLPKGLTPQTLRTLCQWIDEHQDQEFS TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRVQAEQYSLLKQYCQ >gi|283548473|gb|GG730304.1| GENE 3 6069 - 7409 1558 446 aa, chain + ## HITS:1 COG:ECs5105 KEGG:ns NR:ns ## COG: ECs5105 COG2704 # Protein_GI_number: 15834359 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 1 446 1 446 446 725 97.0 0 MLFSIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVA ASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDV AIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFEGKHLEFLDLLGITIP STLLGILAIGIFSWFRGKDLDKDEEFQKFISVPENRHYVYGDTATLLDKKLPKSNWLAMW IFLAAIAVVAVLGAVSELRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEV FRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAVVLLLVSKFVNSQAA ALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHS FILPGLIGVSVSCVFGWVFAAMYGFL >gi|283548473|gb|GG730304.1| GENE 4 7506 - 9152 493 548 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 64 531 26 482 508 194 32 2e-48 MSKVEFTYQAAFPLGEDKTEYYLLTSDHVSVGEFEGETILKVAPEALTLLAQQAFHDASF MLRPEHQQQVASILHDPEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIMGKKGQR VWTGGGDEAALSRGVFNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYSVDGDEYKF LCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAES TLKTVKLASTHYYDALPTEGNAHGQAFRDLQLEQELLEEAQKLGLGAQFGGKYFAHDIRV IRLPRHGASCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPESLRQAGEGEVVK VDLNRPMKEILAQLSQYPVSTRLSLSGTIIVGRDIAHAKLKERIESGEGLPQYVKDHPIY YAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGF YLGSIGGPAAVLAQQSIKHLECVEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIVS KQCANCAK >gi|283548473|gb|GG730304.1| GENE 5 9301 - 9933 590 210 aa, chain + ## HITS:1 COG:ECs5103 KEGG:ns NR:ns ## COG: ECs5103 COG3647 # Protein_GI_number: 15834357 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 1 209 1 209 209 339 86.0 2e-93 MLRTLNPTILHTGALILALILIYTGISAAEKITWLMEVTPVIIVVPLLLVTVKRYPLTPL LYTLIFLHAIILMVGGMYTYAKVPIGFQVQEWLDLSRNPYDKLGHFFQGLVPALTAREIL IRGNSVRGRKMLAFLVCCVALAISATYELIEWWAALAMGQGADDFLGTQGDPWDTQSDMF CALLGALTTVIFLACVHDKQLRRYGLIAAR >gi|283548473|gb|GG730304.1| GENE 6 10217 - 12484 2044 755 aa, chain + ## HITS:1 COG:STM4296 KEGG:ns NR:ns ## COG: STM4296 COG1982 # Protein_GI_number: 16767546 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Salmonella typhimurium LT2 # 1 755 2 756 756 1533 94.0 0 MKVLIVESEFLHQDTWVGSAVERLADALSRQNVTVIKSTSFDDGYAILAANEAIDCLMFS YQMEQQDEHLNVRQLIGKLHERQQNVPVFLLGDREKATASLDRDLLELVDEFAWILEDTA DFIAGRAVAAMTRYRQQLLPPLFSALMKYGDIHEYSWAAPGHQGGVGFTKTPAGRFYHDY YGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA CMTDNDVVVLDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKIS ESPLTKSKAGQKPSYSVVTNCTYDGVCYNAKEAQDLLAQTSDRIHFDEAWYGYARFNPIY ADHYAMRGAPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAVNFSRFNQAYMMHAT TSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTAEGDWFFKPWN KEVVTDPQTGKTYDFADAPTQLLATDQNCWVMRPGESWHGFKDLPDNWSMLDPIKVSILA PGMGDDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGITRGKWGTLINTLCS FKHHYDANTPLAQVMPELVEEHPDAYANMGIHDLGDTMFAWLKENNPGSRLNAAYSGLPV AEITPREAYNAIVSDNVEMVAIENLPGRIAANSVIPYPPGIPMLLSGENFGDANSPQISY LRSLQSWDHHFPGFEHETEGTEIIDGVYHVMCVKA >gi|283548473|gb|GG730304.1| GENE 7 12799 - 13560 396 253 aa, chain + ## HITS:1 COG:STM4295 KEGG:ns NR:ns ## COG: STM4295 COG2207 # Protein_GI_number: 16767545 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 253 1 253 253 421 83.0 1e-118 MRLCSKEACVVVLTEKDVWLRINGKEAISLKANHMALVACDNNIIDFSSLNNALVVHISR DIIKDYLRFLNKDLSQIPLWQRSANPVMTAVCLTPDVFRVAAQHSAMETVDEGERERTRS LLFTVLSRFLDSKKFISLLMHMLRSRISDSVYHIIESDIHKDWNLSMVASCLCLSPSLLK KKLKSENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTP LHYVSQHREPSAA >gi|283548473|gb|GG730304.1| GENE 8 13688 - 15025 1444 445 aa, chain + ## HITS:1 COG:STM4294 KEGG:ns NR:ns ## COG: STM4294 COG0531 # Protein_GI_number: 16767544 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Salmonella typhimurium LT2 # 1 443 1 443 445 765 97.0 0 MSTDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALALSMVY AKMSSLDSSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK DPLVLTLTCVVVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFRGETYMA AWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT AKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQFSSMSPNAAKEFGLVSSVSVIF TLVPYLYTCAALLLLGHGHFGKARPLYLAVTFIAFVYCIWAVVGSGAKEVMWSFVTLMII TALYALNYNRIHKNPYPLDAPVKNS >gi|283548473|gb|GG730304.1| GENE 9 15142 - 16779 1571 545 aa, chain + ## HITS:1 COG:STM4293 KEGG:ns NR:ns ## COG: STM4293 COG2194 # Protein_GI_number: 16767543 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Salmonella typhimurium LT2 # 1 543 1 543 547 982 84.0 0 MLKHLYKRPALGLISWLLLISFYLATFLNIAFYKQVLQDLPLDSVRNVLVFLSMPVVAFS VMNIVLTLASFLWLNRLVACIFILVGASAQYFIMTYGIIIDRSMIANMMDTTPAETFALM TPRLVLTLGISGILAALIACWVKIKPITPALRSILFRGANILISALLIVLVAAFFYKDYA SLFRNNKELVKSLSPSNSIVATSSWYSHQRLAHLPLVRIGEDAHRNPLMLKEKRKNLTIV VLGETSRGDNFSLSGYSRQTNPLLEKDGVVYFPRTTSCGTATAVSVPCMFSDMPRAHYDE ELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACDRVPHQNMTKLNLTGQCIDGECYDEVL FHGLEEYINNLQGDGVIVLHTIGSHGPTYYNRYPAQFKKFTPTCDTNEIQTCSQQQLVNT YDNTILYVDYIVDKAINILKEHQDNFTTSLVYLSDHGESLGENGVYLHGLPYSIAPDTQK HVPMLLWLSEDYQQRYQVSQTCLQKRASSEDFSQDNLFSTLLGLTGVQTQKYQAADDILQ PCRGG >gi|283548473|gb|GG730304.1| GENE 10 16784 - 17452 745 222 aa, chain + ## HITS:1 COG:STM4292 KEGG:ns NR:ns ## COG: STM4292 COG0745 # Protein_GI_number: 16767542 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Salmonella typhimurium LT2 # 1 222 1 222 222 407 92.0 1e-113 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDEDGL HFLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN NQGESELIVSNLTLNIGRRQVWMDGQEIILTPKEYALLSRLMLKAGSPVHREILYNDIYS WDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVATEES >gi|283548473|gb|GG730304.1| GENE 11 17453 - 18535 1116 360 aa, chain + ## HITS:1 COG:STM4291 KEGG:ns NR:ns ## COG: STM4291 COG0642 # Protein_GI_number: 16767541 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 4 358 1 355 356 578 85.0 1e-165 MKLLQYLKRPLPLRQRLILTIGLILLVFQLISTFWLWHESTEQIQLFEQALRDNRNNDRH IMHEIREAIASLIVPGIFMVSLTLLICYQAVRRITRPLADLQKELEARAADNLAPIEVHS STVEIQAVVSALNELVTRLTTTIENERLFTADVAHELRTPLSGVRLHLELLSKVHKVDVT PLIGRLDQMMDSVSQLLQLARVGQSFSAGSYQHVKLLEDVILPSYDELSTMLEQRQQTLL LPQSAADVVVRGDATLLRMLLRNLVENAHRYSPEGTHITISLNTGQNAVIAVEDEGPGID ESKCGELSKAFVRMDSRFGGIGLGLSIVSRITQLHQGHFYLQNRQGTTGTRAWVELAKDQ >gi|283548473|gb|GG730304.1| GENE 12 18529 - 18618 83 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTRIYESLTTVCSVLIVSSFLYVWVSSY >gi|283548473|gb|GG730304.1| GENE 13 18764 - 20266 1868 500 aa, chain - ## HITS:1 COG:STM4290 KEGG:ns NR:ns ## COG: STM4290 COG0477 # Protein_GI_number: 16767540 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 500 1 500 500 951 96.0 0 MLKRKKIKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGAD PSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYA SIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA GVVVLISTIVGEENFLEWGWRIPFFLALPLGLIGLYLRHALEETPAFQQHVDKLEQGDRQ GLQEGPKVSFKEIATKHWRSLLACIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLI IIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFVLAIPAFILINSNVIGLIFAGLLM LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMP AYYLMVIAVVGLITGITMKETANKPLKGATPAASDIQEAKEILGEHYDNIEHKIEDIDQE IAELQLKRSRLVQQHPRIDE >gi|283548473|gb|GG730304.1| GENE 14 20965 - 21963 1220 332 aa, chain + ## HITS:1 COG:no KEGG:CKO_03757 NR:ns ## KEGG: CKO_03757 # Name: not_defined # Def: 2-keto-3-deoxygluconate permease # Organism: C.koseri # Pathway: not_defined # 1 332 1 332 332 465 94.0 1e-129 MKIKATIERIPGGMMLIPLLLGAVLNTLAPDTGAYFGSFTKGMISGTVPILAVWFFCIGA SIDLRATGTVLRKSGTLVITKIAVAWVVAMIAASFIPDTGIQTGFFAGLSVLAIVSAMDM TNGGLYASLMNQYGTKEESGAFVLMSLESGPLMTMVILGSAGLASFEPHHFVGAVLPFLI GFALGNLDHDLRAFFSKATPVLIPFFGFALGNTINLSVIVDTGLLGIVLGVAVIVITGIP LIIADRVIGGGNGTAGVAASSAAGAAVANPVIIAQINPAFEPVAASATALVAASVIVTAI LVPIITALYAKRFNKNPVATETVAAQADSLHH >gi|283548473|gb|GG730304.1| GENE 15 21994 - 22884 581 296 aa, chain - ## HITS:1 COG:no KEGG:CKO_03758 NR:ns ## KEGG: CKO_03758 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 295 1 296 297 476 77.0 1e-133 MTNVLLEGPGRTLECVYPKFMVDLVQGDEPKRSGGFLQQQRLRARLTQEVLSQTQLRAWV MAGVSSEHLVIRLKLMEKLVGMIDPGHLALVRIAERLMSLQQTEHPRGLSTPGLMQQIRS LADGFTQRGAYKEKALTQRGLTVQAGEHSEQIFTRWRAGAYDGWSLPGRCFVALEELRWG AFGDACRLANADVVSMLKDNLRVMAAQTLADSVNAAPAMRHYYHHWLNSPTVGGSGEHND MLSWLGDWCDAQRHPVSWSVTQRWQNVALGMPRLCSAKRLVDAMVEEIFAPSPLIN >gi|283548473|gb|GG730304.1| GENE 16 22881 - 25238 1918 785 aa, chain - ## HITS:1 COG:ZyjdA_1 KEGG:ns NR:ns ## COG: ZyjdA_1 COG0699 # Protein_GI_number: 15804701 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Escherichia coli O157:H7 EDL933 # 1 284 1 275 275 411 77.0 1e-114 MHTQTIYELSQEAERLLMLSLDHLRQLQKLPMASLDDVALKQGEHSKQPVQPLHFSTRGM GAQQATLNNELRKITRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRH TPGQKEPVLHFSHVAPIDALMKVLQQRMRECDRLRLTQTLEIDKDMNILLQHIENGVAFE RYYLGAQPIFHCLKSLNDLVRLSKALEVDFPFAAYAAIEHIPVIEVEFVHLAGQASHPGQ LTLLDTPGPNEAGQPHLQKMLNEQLARASAVLAVMDYTQLKSISDEEVRRAIMAVGKSVP LYALVNKFDQKDRNSDDEEQVRALISGTLMQGGIAPERIYPVSSMWGYLANRARHELTTR GRLPDHQTQRWVQDFAEAALGRRWRTTDLEDTEHIRHAADLLWEDSLFEQPIQKVIHAAY ANASLYALRSASHKLLNYAQSAHEYLEFRAHGLTVAYEKLRLNITHIEEDMRQLQVSQGR VSDEVNHEVELALASAGAYLNEQQAEILCGINTFFVKENVLMMSQPGPGAAVASAEMAGE MLVLHDEGQAKIVLDKMRSACEGVLLAAQESISRDLALRFEQLESTLSRALNDAMRPIEL RVKEELNHAGFRARIRFPAFHAAMFNFNTRQLFNEAIEQDIPAENASSTGGVVRDTFSRW LNQPNWGWNDYVATKTRYLIDMGALHKNLVHYVTQFCQQIRKALVAQVDISVTAGMATFF ADFSLNLAQLQASLRESLTLRQQNESAVNALNEQLQHRITTAAWLYEDSRLLRDDINTLF ATEHT >gi|283548473|gb|GG730304.1| GENE 17 25778 - 26113 415 111 aa, chain + ## HITS:1 COG:STM4289 KEGG:ns NR:ns ## COG: STM4289 COG2824 # Protein_GI_number: 16767539 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism # Organism: Salmonella typhimurium LT2 # 1 111 1 111 111 216 98.0 1e-56 MSLPHCPQCNSEYTYEDNGMFICPECAHEWNDAEPAQDSDELIVKDANGNLLADGDSVTV VKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN >gi|283548473|gb|GG730304.1| GENE 18 26232 - 26678 500 148 aa, chain + ## HITS:1 COG:STM4288 KEGG:ns NR:ns ## COG: STM4288 COG2764 # Protein_GI_number: 16767538 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 147 1 147 147 258 83.0 2e-69 MPLSPYISFAGNCADAIAYYQKTLGAELLYKINFGEMPKPAQDSEEGCPSGMTFPDTAIA HANLRVAGSDIMMSDAAATGKAHYSGFTLVLDTQNVDEGKRWFDNLAANGNIEMDWQETF WAHGFGKVSDQYGVPWMINVVKQQQPTE >gi|283548473|gb|GG730304.1| GENE 19 26811 - 27599 257 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 231 1 214 305 103 31 4e-21 MQTIIRVEKLSRSFNQHQALNAVDLNICAGEMVALLGPSGSGKSTLLRHLSGLIVGDKSP GSRVELLGRTVQHEGRLARDIRKSRAHTGYIFQQFNLVNRLTVLENVLIGALGSTPFWRT CFSWFSQEQKQRALQALTRVGMAHFAYQRVSTLSGGQQQRVAIARALMQQAKVILADEPI ASLDPESARIVMDTLRDINQTDGITVVVTLHQVDYALRYCERIVALRQGNVFFDGSSQHF DNDRFDHLYRSMNRVEQNAQAA >gi|283548473|gb|GG730304.1| GENE 20 27623 - 28639 1177 338 aa, chain + ## HITS:1 COG:phnD KEGG:ns NR:ns ## COG: phnD COG3221 # Protein_GI_number: 16131931 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Escherichia coli K12 # 1 338 1 338 338 602 91.0 1e-172 MSYRTIAALAFTSMFSLSTLLSPVHAEEQEKALNFGIISTESQQNLKPQWEPFLKDMEKS LGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYW SVLIVNKDSPINNLNDLIAKRKALTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVN AGHETNALAVANKQVDVATNNTENLDKLETSAPEKLKELKVIWKSPLIPGDPIVWRKNLS ETTKDKVYDFFMNYGKTPEQKTVLERLGWAPFRASSDLQLVPIRQLALFKEMQGVKDNKG LNEEEKTSKTSALKAQLDDLDRLTAALGAMTSVTKAVQ >gi|283548473|gb|GG730304.1| GENE 21 28765 - 29544 1024 259 aa, chain + ## HITS:1 COG:ECs5086 KEGG:ns NR:ns ## COG: ECs5086 COG3639 # Protein_GI_number: 15834340 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Escherichia coli O157:H7 # 1 259 18 276 276 452 94.0 1e-127 MQTITVAPPKRSWFSLLSWAILLAVLVVSWKGAEMAPLTLIQDSGNMATFAADFFPPDFS QWQDYLGEMAVTLQIAVWGTALAVVLSIPFGLMCADNLVPWWIYQPMRRLMDACRAINEM VFAMLFVVAVGLGPFAGVMALFIHTTGVLSKLLSEAVEAIEPGPVEGIRATGANKLEEIL YGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIGVTLWEAIRGFQFQQTCALMVLI IVTVSLLDFLSQRLRKHFI >gi|283548473|gb|GG730304.1| GENE 22 29565 - 30290 783 241 aa, chain + ## HITS:1 COG:ECs5085 KEGG:ns NR:ns ## COG: ECs5085 COG2188 # Protein_GI_number: 15834339 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 241 1 241 241 414 87.0 1e-116 MHLSTHPTSYPTRYQEIAARLEQELRQHYRCGDYLPAEHQLAARYEVNRHTLRRAIDQLV ERGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPTSEKLLAVLRPASSHIADA LSINEGDNVIHLRTLRRVNGIALCQIDHYFSDLTLWPLLQGFTSGSLHDYLREQSGLTLL RTQTRISARRAQAKESKVLEIPNMAPLLCVRTLNHREGEEQAVEYSVSLTRADMIEFTME H >gi|283548473|gb|GG730304.1| GENE 23 30291 - 30743 524 150 aa, chain + ## HITS:1 COG:ECs5084 KEGG:ns NR:ns ## COG: ECs5084 COG3624 # Protein_GI_number: 15834338 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli O157:H7 # 1 150 1 150 150 202 71.0 2e-52 MHFDTATRQRWMRALAYSNADALNARINALKLTPDYELIRAPESGLMQIQARMGGTGNRF FAGDTTLTRAVIRLKSGTLGYSYLLGRNKHHAEQCAVIDALLQEQTHFQNLMETLIAPLE AERDALISARRAEVNASRVDFFTLVRGDNA >gi|283548473|gb|GG730304.1| GENE 24 30740 - 31324 704 194 aa, chain + ## HITS:1 COG:phnH KEGG:ns NR:ns ## COG: phnH COG3625 # Protein_GI_number: 16131926 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli K12 # 1 194 1 194 194 306 82.0 2e-83 MTLQTAFNLPVQDAQQSFRRLLKAMSEPGAIVALHQLKHGWQPLSVATTSVLLTLVDGDT PVWLTPSMDNDIARQNLRFHTNAPLVDRPQLAAFAVADERISSEQLNALSTGSAVAPETS ATLIVQVTGLSGGRMLRLTGAGIAEERMIAPQLPECLIHELTERPHPFPLGVDLILTCGE RLLAIPRTTHVEVC >gi|283548473|gb|GG730304.1| GENE 25 31324 - 32391 1111 355 aa, chain + ## HITS:1 COG:ECs5082 KEGG:ns NR:ns ## COG: ECs5082 COG3626 # Protein_GI_number: 15834336 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli O157:H7 # 1 350 1 350 354 593 87.0 1e-169 MYVAVKGGEKAIANAHALQENRRRGDESIAELSVAQIEQQMNLAVDRVMTEGGIADRELA ALALKQASGDNVEAIFLLRAYRTTLAKVAVSEPVNSAEMRLERRISAVYKDIPGGQLLGP TYDYTHRLLDFTLLANGETPPLRCADNTQDASPHVFSLLANQGLAKREEDNGDAPDDITR TPPVYPCSRASRLQQLMRGDEGYLLALAYSTQRGYGRNHPFAAEIRSGYVALETVPEELG FAVNVGELLITECEMVNGFVAPENESPHFTRGYGLVFGMSERKAMAMALVDRALQAADYD ETVTGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQQEAARDR >gi|283548473|gb|GG730304.1| GENE 26 32381 - 33229 1024 282 aa, chain + ## HITS:1 COG:ECs5081 KEGG:ns NR:ns ## COG: ECs5081 COG3627 # Protein_GI_number: 15834335 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized enzyme of phosphonate metabolism # Organism: Escherichia coli O157:H7 # 3 282 2 281 281 546 95.0 1e-155 MTANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASV IGEPDVLKVIDQGADDTTNAVSIRNFFKRVTGVATTERTEEATLIQTRHRIPETPLVEDQ IIIFQVPIPEPLRFIEPRETETRTMHALEEYGIMQVKLYEDIARFGHIATTYAYPVKVND RYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPYTRVESLDFDDHPFTVQSWDE PCAICGSTHSYLDEVVLDDSGKRMFVCSDTDYCRQQSEALSK >gi|283548473|gb|GG730304.1| GENE 27 33226 - 33984 367 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 19 251 36 267 329 145 34 8e-34 MTQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISSRLTPQSG EILYQDRSLYGMNEADRRRLLRTEWGVVHQHPMDGLRRQVSAGGNIGERLMATGARHYGD IRATAQRWLEEVEIPASRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSV QAKLLDLLRGLVVELDLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHP YTQLLVSSVLQN >gi|283548473|gb|GG730304.1| GENE 28 34204 - 34890 228 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 224 2 212 245 92 30 1e-17 MNAIRVENVSKTFVLHQQNGVRLPVLQNATLAVKSGECVVLHGHSGSGKSTLLRSLYANY LPDEGHIHIRHSDEWVDLVQAPARKVLEVRRSTIGWVSQFLRVIPRISALDVVMQPLLDL GVPREECAAKAASLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTA SLDAKNSAAVVALIEEAKARGAAIVGIFHDQTVRDRVADRLHLMGTTA >gi|283548473|gb|GG730304.1| GENE 29 34887 - 36023 1202 378 aa, chain + ## HITS:1 COG:phnM KEGG:ns NR:ns ## COG: phnM COG3454 # Protein_GI_number: 16131921 # Func_class: P Inorganic ion transport and metabolism # Function: Metal-dependent hydrolase involved in phosphonate metabolism # Organism: Escherichia coli K12 # 1 378 1 378 378 683 90.0 0 MIINNVKLVLEDEVVQGSLEIEGGVIRAFAETQSRLPEALDGEGGWLLPGLIELHTDNLD KFFTPRPKVDWPAHSAMSSHDALMVASGITTVLDAVAIGDVRDGGDRLENLEKMINAVEE TQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVGREPVTLVSLMDHSPGQRQFANREKYRE YYQGKYSLTDEQMAHYEEEQLALAARWSQPNRNAIAQVCRERRIALASHDDATCDHVRES HQLGSVIAEFPTTFEAAEASRQHGMNVLMGAPNIVRGGSHSGNVAAHKLAELGLLDILSS DYYPASLLDAAFRVADDNANRFTLPQAIRLVTRNPARALNLDDRGVIAEGKRADLVLAHR KGGNIHIDHVWRQGKRVF >gi|283548473|gb|GG730304.1| GENE 30 36026 - 36580 490 184 aa, chain + ## HITS:1 COG:ECs5077 KEGG:ns NR:ns ## COG: ECs5077 COG3709 # Protein_GI_number: 15834331 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized component of phosphonate metabolism # Organism: Escherichia coli O157:H7 # 1 184 2 185 185 303 83.0 2e-82 MGKLIWLMGPSGSGKDSLLAELRQQEPAQLLVAHRYITRAANAGNENHIALSEQEFFTRA GQNLLALSWHANGLYYGVGVEIDLWLHAGFDVVVNGSRAHLPQAQARYGASLLPICLQVS PAILRQRLQARGRESETEIAARLERAARYAPYDCHVLNNDGSLLQSVDTLLALMGRKEKK HVCL >gi|283548473|gb|GG730304.1| GENE 31 36567 - 37001 446 144 aa, chain + ## HITS:1 COG:phnO KEGG:ns NR:ns ## COG: phnO COG0454 # Protein_GI_number: 16131919 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli K12 # 1 144 1 144 144 229 79.0 2e-60 MSVCELRRATLYDTDAVYALICELKQGQFDHQAFSAGYAANLQDPNMHYQLALLDGQVVG LIGLHLQFHLHHANWIGEIQELVVMPQARGLRVGSRLLAWAEATAREAGAEMTELSTSTQ RLDAHRFYQREGYTMSHFRFTKPL >gi|283548473|gb|GG730304.1| GENE 32 37010 - 37768 688 252 aa, chain + ## HITS:1 COG:ECs5075 KEGG:ns NR:ns ## COG: ECs5075 COG1235 # Protein_GI_number: 15834329 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Escherichia coli O157:H7 # 1 252 1 252 252 442 82.0 1e-124 MSLTITLTGTGGAQLVPAFGCDCTACQRARVQTQYRRRPCSGVVKFNNAVTLLDAGIPHL MDDWPAGSFQQFLLTHYHMDHVQGLFPLRWGVGAAIPVYGPPDEQGCDDLFKHPGILDFS HTVAPFVVFDLQGLQVTPLPLNHSKLTFGYLFETAHSRVAWLSDTAGLPDKTLKFLHNNQ PQVIIIDCSHAPRAEPPRNHCDVNTVIALNEVIRCPRVILTHISHQFDQWLMENPLPSGF EAGYDGMEIVLA >gi|283548473|gb|GG730304.1| GENE 33 37837 - 38322 127 161 aa, chain + ## HITS:1 COG:no KEGG:Ent638_0293 NR:ns ## KEGG: Ent638_0293 # Name: not_defined # Def: putative inner membrane protein # Organism: Enterobacter_638 # Pathway: not_defined # 1 160 38 197 198 199 62.0 3e-50 MTKTRRIIHHACWFAVLGPHIGVPVTIAHEALTSYRTLGNLLLKILSILPLFMALTWFIG GFAALLTGVATACLPAHIYRCIWQRTLACGVSGAAIATLCGLLISREIAPGLFWMSTGPG LLAGLIMGGLVPYLPFRGENNYVRPEIVKINSDVVPPERKV >gi|283548473|gb|GG730304.1| GENE 34 38389 - 38640 235 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836615|ref|ZP_06356356.1| ## NR: gi|283836615|ref|ZP_06356356.1| hypothetical protein CIT292_11107 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11107 [Citrobacter youngae ATCC 29220] # 1 83 1 83 83 125 100.0 8e-28 METTRNRDWRIAQKQRNKSRDVHTALLRFRGEKNWKMLYTRSDKVSRAAQLGIEYPRVTN QQRTKRGLEEYQPADERSFCMQS >gi|283548473|gb|GG730304.1| GENE 35 38804 - 38941 176 45 aa, chain + ## HITS:1 COG:no KEGG:SNSL254_A0174 NR:ns ## KEGG: SNSL254_A0174 # Name: not_defined # Def: low molecular weight phosphotyrosine protein phosphatase # Organism: S.enterica_Newport # Pathway: not_defined # 1 43 65 107 107 78 88.0 8e-14 MAEYRRIIENKPLYVLDIPDDYRYMDPALVQLLEELVPEKLGITG >gi|283548473|gb|GG730304.1| GENE 36 39019 - 39270 262 83 aa, chain + ## HITS:1 COG:STM1551 KEGG:ns NR:ns ## COG: STM1551 COG2161 # Protein_GI_number: 16764896 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Antitoxin of toxin-antitoxin stability system # Organism: Salmonella typhimurium LT2 # 1 80 1 80 82 92 51.0 1e-19 MPHIILSDTTASVSELKKNPMATVSAGDGFPVAILNRNQPAFYCVPAELYEKMLDALDDQ QLVKLVHERSQQPLVDVDLDSYL >gi|283548473|gb|GG730304.1| GENE 37 39267 - 39554 131 95 aa, chain + ## HITS:1 COG:VCA0444 KEGG:ns NR:ns ## COG: VCA0444 COG2026 # Protein_GI_number: 15601207 # Func_class: J Translation, ribosomal structure and biogenesis; D Cell cycle control, cell division, chromosome partitioning # Function: Cytotoxic translational repressor of toxin-antitoxin stability system # Organism: Vibrio cholerae # 1 94 1 94 96 103 59.0 5e-23 MSYTVKFREDALKEWQKLDKAIQQQFAKKLKKCCENPHVPPAKLRGIKDCYKIRLRTSGF RLAYQVIDDTLVIAVVAVGKRERSEVYNLASERLR >gi|283548473|gb|GG730304.1| GENE 38 39551 - 39865 224 104 aa, chain - ## HITS:1 COG:no KEGG:UTI89_C4686 NR:ns ## KEGG: UTI89_C4686 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_UTI89 # Pathway: not_defined # 11 104 16 109 109 64 84.0 1e-09 MFLLFSLLSLTTVSAQADIIDDAIGNIQQAINDAYKPDNGRDYDDSRDESWQRQMSDDRR RQYDNRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEEDYDR >gi|283548473|gb|GG730304.1| GENE 39 39949 - 40581 450 210 aa, chain - ## HITS:1 COG:no KEGG:CKO_03781 NR:ns ## KEGG: CKO_03781 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 210 11 220 220 350 78.0 2e-95 MIVMPTTYSPMTVARSFKVVDTFELSGRILLAIYDRQTPRAAIIEADIETFNGVPRHRVL AALDLQRKPYLDNDILTVERCWEEASVFQVEGICVNPSERDKGLATRLYEALILRCGVTL ISDFEQYDGGKTLWQKIARESEYISVFILDTEQNAFWPYDGSKVIYDGGCIPEERIWSVS PDTKCRGVVLVAEEKQRAYRLMEPGAPYRV >gi|283548473|gb|GG730304.1| GENE 40 40757 - 43030 2315 757 aa, chain - ## HITS:1 COG:Z5692_1 KEGG:ns NR:ns ## COG: Z5692_1 COG0642 # Protein_GI_number: 15804683 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Escherichia coli O157:H7 EDL933 # 1 637 1 640 640 922 81.0 0 MPQPGRHFFASARGRLLFFNLLVVAVTLMVSGVAVLGFQHASQIQEQVQQQTVDDMTGSM NLARDTANVATAAVRLSQVVGALEYKGEAERLQETQRALKHSLQQLASAPLAQREPVLVE RIIQRSQELQSSVEGMLQRGQRRHLERNALLSSLYQNQSYLRHLQTLTGAQDDMLLEQID RLIVAAIETPTPRSVVKQLDSVMPALPLHHSSALISRILNDFNQELHKLEPLSSALEQSD LAINWYMFHIKALVAILNSDINQYASQVALISEQRVAQSHQELQSGALFIMVFALLAVVI TGFAGWYIYRNLGSNLTAISQAMTRLAHGESDVSVPALQRRDELGELARAFSVFARNTAS LEHTTRLLKEKTSQMEIDRTERQELEEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSL DLVEPDSPDAPRINRALKAAERGALLTQRLLAFSRKQSLHPHAVELKTLLENLGELMRHS LPATLTLEIEAQSPAWPAWIDVSQLENAIINLVMNARDAMEGQAGMIKIRTWNQRVTRSD GRKQDMVMLEVVDRGYGMSQEVKAQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEI ESAPGQGTTVRLQLPRAVVPVQVEAEPIAERAANSGEKLVLVLEDEADVRQTLCEQLHLL GYLTLEAANGEQAMHMLAASSEIDILISDLMLPGALSGVDVVNHARAYYPQLSILLISGQ DLRPAHNPALPDVALLRKPFTRTELAQALRKSEQSYY >gi|283548473|gb|GG730304.1| GENE 41 43145 - 44668 188 507 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 261 484 6 226 245 77 28 4e-13 MSRTPVLEMRNIAKAFGKFYALKGVDLTVWPGEIHALMGENGAGKSTLMKILAGAYTATS GEILIDGQPFHIRGPKDALSAGITLIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMV MQSQKVIDRLGAQFKASDRVMTLTIAEQQQVEIARALHRNSRILVMDEPTAALSSRETHR LFELIMRLRDEGMAIIYISHRMAEVYELSDRVSVLRDGQYVGSLTRDKLNASELVRMMVG RPLSDLFNKERDIPLGKARLNVHHLTDGSKVQPCSLLVRSGEIVGLAGLVGAGRSELAQL IFGVRKAVGGMIEVDGEPVVIHSPREAIDHGIGFLTENRKEQGLFLELAAAENITMATLE RDANWGMLDRKKAQAISDDAIKLLNIRVPHAQVRAGGLSGGNQQKLLISRWVAIGPRILI LDEPTRGVDVGAKSEIYRIMNEMARKGVAILMISSELPEVVGMSDRVYVMREGSIVGELN GQSITQENIMTLATGVNDSHQQAVPHE >gi|283548473|gb|GG730304.1| GENE 42 44661 - 45656 1367 331 aa, chain + ## HITS:1 COG:YPO3963 KEGG:ns NR:ns ## COG: YPO3963 COG4158 # Protein_GI_number: 16124091 # Func_class: R General function prediction only # Function: Predicted ABC-type sugar transport system, permease component # Organism: Yersinia pestis # 1 330 1 330 330 465 89.0 1e-131 MNNPTNPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQ ASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFAMLSIPAALMLGLVLG LFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNISFEWIGNNYLGPVPWLV VIALAVVVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGV MSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMG VSYFWQLVIKGAVIIIAVLIDKYRTRHHQSA >gi|283548473|gb|GG730304.1| GENE 43 45686 - 46627 1175 313 aa, chain + ## HITS:1 COG:ECs5071 KEGG:ns NR:ns ## COG: ECs5071 COG1879 # Protein_GI_number: 15834325 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Escherichia coli O157:H7 # 1 313 1 313 313 503 97.0 1e-142 MRLKPLVTALCAGALLAAAPFVQAKELKSIGVTVGDLANPFFVQITKGAELEARKLAGDS VKVTLVSSGYDLGQQVSQIDNFIAAKVDMIILNAADSKGIGPAVKRAKDAGIVVVAVDVA AEGADATITSDNTQAGEMACKYITDRLKGKGNVVIINGPPVSAVQNRVEGCQTEFKRHPD IKVLSYNQNAKGSREGGLEIMTALLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV GVDGSPDGEEALKRENSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPKEPVLIPVTMID KNNVGNYKGWTVK >gi|283548473|gb|GG730304.1| GENE 44 46747 - 47430 754 227 aa, chain + ## HITS:1 COG:ECs5070 KEGG:ns NR:ns ## COG: ECs5070 COG3822 # Protein_GI_number: 15834324 # Func_class: R General function prediction only # Function: ABC-type sugar transport system, auxiliary component # Organism: Escherichia coli O157:H7 # 1 227 1 227 227 428 87.0 1e-120 MKRSAINEILGHTRQFFSLHDVHLPPFASFPPTQWRKLDASAWSEVFDLKLGWDVTAFGG NNFAAQGLTLFTLRNGSPKGMPYEKCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNL IVELWNAGLREQTEDSDVSVVIDGCRQTHAAGSRLRLTPGESICLPPGLYHSFWAEEGFG DVLVGEVSSVNDDDHDNHFLQPIARYNDIEEDEPAQLVLCNEYRLFR >gi|283548473|gb|GG730304.1| GENE 45 47445 - 48305 1098 286 aa, chain + ## HITS:1 COG:ECs5069 KEGG:ns NR:ns ## COG: ECs5069 COG0191 # Protein_GI_number: 15834323 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Escherichia coli O157:H7 # 1 285 1 285 286 506 91.0 1e-143 MPLISLAEGLAHARERRYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYVSLD SLVEAVKFEAARHDIPVVLNLDHGLHFESVVRALRLGFSSVMFDGSTLEYEENIRQTREV VKMCHAVGVSVEAELGAVGGDEGGALYGHADESLFTDPMLARDFVDRTGIDALAVAIGNA HGKYKGVPQLDFPRLDAIRQQAAIPLVLHGGSGISDDDFRRAIELGIHKINFYTGMSQAA LAAVETRMANRQPLYDEFAELLLGIEEAITDTVSEQMRIFGSAGQI >gi|283548473|gb|GG730304.1| GENE 46 48305 - 49306 1048 333 aa, chain + ## HITS:1 COG:ECs5068 KEGG:ns NR:ns ## COG: ECs5068 COG0524 # Protein_GI_number: 15834322 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Escherichia coli O157:H7 # 1 332 2 333 333 574 90.0 1e-163 MERKGIIAAGNMLVDHVHQIVQWPERGWLAEITRSERATGGAPLNVLLTLAKMHTGLPLQ AVGLIGQDSDGDYIMAMLEQYHVNRQHVQRTTFAPTSMSQVMTDPSGQRTFFHSPGANRL LDLPAFEQLDSTMKIFHLGYLLLLDSLDMPDEVYGTRSARLLAQMRDNGFETSLDLVSRK GDPRYQPLVMPALRHLDYLVINELEAGEFSGLEIRQPNGELHIPHIATAARELLDAGVRQ RVVIHCPEGAWGEAPDLPGVWIPSQYLAQEEIVGSVGAGDAFCAGFLYGCHERWSLTDSV RLAHACARASLLCANAIDGAKTLDELKAGMADA >gi|283548473|gb|GG730304.1| GENE 47 49450 - 50181 712 243 aa, chain - ## HITS:1 COG:ECs5067 KEGG:ns NR:ns ## COG: ECs5067 COG0745 # Protein_GI_number: 15834321 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Escherichia coli O157:H7 # 1 237 1 235 235 355 78.0 4e-98 MKPTILVVDDDVAVCTLLQDVLSEHVFAVTACHSGQEALRCVETQPEIALVLLDMMLPDI NGLMVLQQVQKMRPGLPVVMLTGLGSESDVVVGLEMGADDYIGKPFNARVLVARVKAVLR RVGVLTPESGSPQTTGLSFNGWHLDTAGCQLHNPQQLKVELTQGEYSLLLALAQNARRVL SREQLLELTRSDSVEVFDRTIDVLIMRLRRKIEVNPHQPMLIKTLRGLGYVFAADVQHHD KAA >gi|283548473|gb|GG730304.1| GENE 48 50210 - 50374 73 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086655|ref|ZP_06571605.1| ## NR: gi|291086655|ref|ZP_06571605.1| hypothetical protein CIT292_11123 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11123 [Citrobacter youngae ATCC 29220] # 1 54 1 54 54 104 100.0 2e-21 MSVIDSAQSDSDKAQGCAGNITSVTLPGRHVLGIRHVKYDDSLFFVRVLRKIRP >gi|283548473|gb|GG730304.1| GENE 49 50470 - 50889 412 139 aa, chain + ## HITS:1 COG:STM4285 KEGG:ns NR:ns ## COG: STM4285 COG0243 # Protein_GI_number: 16767535 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 139 1 139 715 293 99.0 7e-80 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTP RLKTPMIRRQRGGKLESVSWDEALNYVADRLSAIKAKYGPDAIQTTGSSRGTGNETNYVM QKFARAVIGTNNVDCCARV >gi|283548473|gb|GG730304.1| GENE 50 50938 - 52617 1970 559 aa, chain + ## HITS:1 COG:STM4285 KEGG:ns NR:ns ## COG: STM4285 COG0243 # Protein_GI_number: 16767535 # Func_class: C Energy production and conversion # Function: Anaerobic dehydrogenases, typically selenocysteine-containing # Organism: Salmonella typhimurium LT2 # 1 559 157 715 715 1127 95.0 0 MSNAINEIDNTDLVFIFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHI ALKNGSNIALLNAMGHVIIEEKLYDQAFVASRTEGFEEYSKIVEGYTPESVEDITGVSAH DIRQAARMYATAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPSVGVNPVRGQN NVQGACDMGALPDTYPGYQYVKFPENREKFAKAWGVESLPAHTGYRISELPHRAAHGEVR AAYIMGEDPLQTDAELSAVRKGFEDLELVIVQDIFMTKTAAAADVILPSTSWGEHEGVFS AADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGAT YEKMGELGYIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTPEYPMV LSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTADAERLGIQDEELVWVNSRKGRVI TRAAVSDRPNKGAIYMTYQWWIGACNELVTENLSPITKTPEYKYCAVNVERIADQRAAEQ YVIDEYNKLKASLRESAMG >gi|283548473|gb|GG730304.1| GENE 51 52709 - 53392 702 227 aa, chain + ## HITS:1 COG:ECs5060 KEGG:ns NR:ns ## COG: ECs5060 COG0790 # Protein_GI_number: 15834314 # Func_class: R General function prediction only # Function: FOG: TPR repeat, SEL1 subfamily # Organism: Escherichia coli O157:H7 # 1 227 1 229 229 381 86.0 1e-106 MKRLFALMVLMTCFVHAEEPGSQFLKAAESGDRRAQYFLADTWFSSGDLSKAEYWAQKAA NNGDADAWALLAQIKITNPVSLDYPQAKTLAEKATQAGSKAGEITLARILVNTQAGRTDY PKAITLLQKASEDLENDSAVDAQMLLGLIYANGVGIPADDEKATWYFKRSSAISRTGYSE YWAGMMFLNGEQGFIEKNKQKALHWLNLSCTEGFDTGCEEFDKLTNG >gi|283548473|gb|GG730304.1| GENE 52 53543 - 54853 1908 436 aa, chain - ## HITS:1 COG:STM4283 KEGG:ns NR:ns ## COG: STM4283 COG1301 # Protein_GI_number: 16767533 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Salmonella typhimurium LT2 # 1 435 1 435 436 732 97.0 0 MKNLKVSLAWQILIAMVLGILLGSYLHYHSDSREWLVVNLLSPAGDIFIHLIKMIVVPIV ISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGTGVDMSQLATV DISKYQSTTAEVQSHAHGLMGTILSLVPTNIVASMAKGDMLPIIFFSVLFGLGLSSLPAT HREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVLLVHFA ILFFALVVLGIVARICGLSIWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPASI TSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSLWQEIVLVLTLMVTSKGIAGVPGV SFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKA LAYERDVLGKFEKTAL >gi|283548473|gb|GG730304.1| GENE 53 55197 - 55817 604 206 aa, chain - ## HITS:1 COG:STM4282 KEGG:ns NR:ns ## COG: STM4282 COG4235 # Protein_GI_number: 16767532 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Salmonella typhimurium LT2 # 1 206 1 206 206 261 73.0 4e-70 MNQPERCTAPLRPIPVKRLATAAALMVVACIGGYLLTPKWQAVRQEQARLADPLHAFSDE NIQEKQLFSLQSQIRANPQDGVKWAQLGEYYLWQNAYHNALLAYEQALRIRGENAEIYSA LATVLYYQAGQHMTPPTREMIDKALALDPAEVTALMLLASDAFMQADYAQAILMWQKVMD LNSPRVNRAQLIDSINMAKLLQNRQK >gi|283548473|gb|GG730304.1| GENE 54 55814 - 56323 362 169 aa, chain - ## HITS:1 COG:STM4281_2 KEGG:ns NR:ns ## COG: STM4281_2 COG3088 # Protein_GI_number: 16767531 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein involved in biosynthesis of c-type cytochromes # Organism: Salmonella typhimurium LT2 # 52 169 1 118 118 190 92.0 1e-48 MRKLIAALPDGGVNALSGLQGAQAVGRISAATSGRKLLLLTFVLFFIAFATHAQVVDTWR FDNPQQQEKALSIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEAEITTWMT DRYGDFVRYNPPLNEQTLLLWALPCLLLLLVGVVVWLVRTRQRAEEGEQ >gi|283548473|gb|GG730304.1| GENE 55 56316 - 57980 1744 554 aa, chain - ## HITS:1 COG:STM4281_1 KEGG:ns NR:ns ## COG: STM4281_1 COG1138 # Protein_GI_number: 16767531 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Cytochrome c biogenesis factor # Organism: Salmonella typhimurium LT2 # 1 551 25 575 622 778 83.0 0 MTPLAVLMGIRQRWQGVMRLASVGVWAQFALLLLAFAILVFCFLTSDFSVVYVAQHSYSL LPWGLKLAAVWGGHEGSLLLWVLFLSGWSALFALRARREQDALFPLTLSVLSIITALLLL FVLVWSDPFVRIFPPAIEGRDLNPMLQHLGLILHPPLLYLGYGGLTVAAGVALASLLRGD FNAQSAWACWRWALPGWCALTLGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSASAL LHSLYITRQRGIFRHWSLLLAIVTLILALLGTLIVRSGILVSVHAFALDNVRAAPLFALF TVLSLASLGLYAWRGQSIRQRARFGGWSREMLILVALLLFSAVLLIVLIGTLYPMIYGLF GWGRLSVGAPYFNRATLPFGLLMLLVIVLATIRSRNVPVRCQLPALLAHVGVLVFAVGIV FSSGSRQEISLNLSPGQQVELAGYIFRFERLDLEAKGNYTSEKALITLWQNEKRIGSLQP ERRFYAARRQQMMEPGIRWNLLHDWYAVMGEKTGPDRYAMRLYVQTGVRWIWGGGLLMVC GALLSGWRGRKRDA >gi|283548473|gb|GG730304.1| GENE 56 58052 - 59008 1273 318 aa, chain - ## HITS:1 COG:STM4280 KEGG:ns NR:ns ## COG: STM4280 COG3301 # Protein_GI_number: 16767530 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, membrane component # Organism: Salmonella typhimurium LT2 # 1 318 1 318 318 489 94.0 1e-138 MTPASAFHFESLVWDWPIAIYLFLIGISAGLVTLAILLRRFHPEAGGSDSTLLRTTLVLG PGAIIFGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEKEV IALQQRWLPRLGIVQKALTLITPFHRALETLMLVLAVLLGAYTGFLLSALKSYPFLNNPI LPVLFLFSGISSGAAVALIAMALRHRSNPHSTEAHFVHRMEVPVVWLEIFLLAAFFVGLA LGDDGKMRALAAALGGGFWTWWFWLGVAGLGLILPMLLKPWANRSSTFHGVLAVCGASLT GVLLLRFFILYAGQLTVA >gi|283548473|gb|GG730304.1| GENE 57 59005 - 59676 461 223 aa, chain - ## HITS:1 COG:STM4279 KEGG:ns NR:ns ## COG: STM4279 COG0437 # Protein_GI_number: 16767529 # Func_class: C Energy production and conversion # Function: Fe-S-cluster-containing hydrogenase components 1 # Organism: Salmonella typhimurium LT2 # 1 223 1 223 223 416 95.0 1e-116 MSCSRRQFITGVGALVAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACRQVN NVPEGVSRLTIIRSEPLGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASYRDAANGIVDV NPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLKAGKQPACVESCPTKALTFG NLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFKYGEVSQ >gi|283548473|gb|GG730304.1| GENE 58 59673 - 60239 429 188 aa, chain - ## HITS:1 COG:no KEGG:SPAB_05273 NR:ns ## KEGG: SPAB_05273 # Name: not_defined # Def: cytochrome c nitrite reductase pentaheme subunit # Organism: S.enterica_Paratyphi_B # Pathway: not_defined # 1 188 30 217 217 344 93.0 1e-93 MSVLRSLLTAGVLASGLFWSLSGITATPTPQESDQRWTVTQQRNPDAACLDCHKPDTEGM HGKHAEVINPNNKLPVTCTNCHGQPSPNHREGVKDVMRFNEPMYNVEQQNSVCMSCHLPE QLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSEKGRIKICVDCHSDQRNNPNFNPAS VPLLKEHP >gi|283548473|gb|GG730304.1| GENE 59 60284 - 61720 1651 478 aa, chain - ## HITS:1 COG:ECs5052 KEGG:ns NR:ns ## COG: ECs5052 COG3303 # Protein_GI_number: 15834306 # Func_class: P Inorganic ion transport and metabolism # Function: Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit # Organism: Escherichia coli O157:H7 # 1 478 1 478 478 909 92.0 0 MARIKSRVRRFFSLLLPLLFISAVHAEQTSVPAKSVTVEAKNETFAPQHPDQYLSWKATS EQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVRETLRTGAPKTAEDGPLPM ACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPDFAKGKPELTL SRPYAERAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEK YYDTIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHGKNNVTCIDCHMPKVQNAEGKIYTD HKIGNPFDNFAQTCANCHTQDKASLQKVVAERKQAIHDLKIKVEDQLVHAHFEAKAAWDA GATEAEMKPILEDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGSAMDKAADARTKLVRLL ATKGITHEIPLPDISTKEKAQAAIGLNMQQINAEKQDFIKTVIPQWEEQARKNGLLSQ >gi|283548473|gb|GG730304.1| GENE 60 62154 - 64112 2207 652 aa, chain + ## HITS:1 COG:acs KEGG:ns NR:ns ## COG: acs COG0365 # Protein_GI_number: 16131895 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Escherichia coli K12 # 1 652 1 652 652 1302 95.0 0 MSQIHKHAIPANIADRCLINPEQYEAKYQQSVNEPDTFWGEQGKILDWIKPYSQVKNTSF APGNVSIKWYEDGTLNLAANCLDRHLQANGDRTAIIWEGDDATQSKHITYRELHRDVCRF ANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNS RLVITADEGVRAGRAIPLKKNVDDALKNPNVKSVEHVIVLKRTGGKTEWQEGRDLWWSDL IEKASPEHQPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHQGDI YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMSQVVDKHQVNILYTAPTA IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGG FMITPLPGATELKAGSATRPFFGVQPAIVDNEGNPLEGATEGNLVITDSWPGQARTLFGD HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVSHP KIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPTPELYAEVRNWVRKEIGPLATPDVLHWTD SLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS >gi|283548473|gb|GG730304.1| GENE 61 64350 - 64664 343 104 aa, chain + ## HITS:1 COG:STM4274 KEGG:ns NR:ns ## COG: STM4274 COG3162 # Protein_GI_number: 16767524 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Salmonella typhimurium LT2 # 1 102 1 102 104 190 96.0 6e-49 MNDNIYQRIEDSARFRELVEKRQRFATILSIIMLAVYISFILLIAFAPGWLGTPLHAGTS VTRGIPIGVGVILISFILTGIYIWRANGEFDRLNNAVLHEVKAS >gi|283548473|gb|GG730304.1| GENE 62 64661 - 66310 2209 549 aa, chain + ## HITS:1 COG:ECs5049 KEGG:ns NR:ns ## COG: ECs5049 COG4147 # Protein_GI_number: 15834303 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Escherichia coli O157:H7 # 1 549 1 549 549 936 96.0 0 MKRVLTALAATLPFAANAADAISGAVQRQPTNWQAIIMFLIFVIFTLGITYWASKRVRSR NDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFL IAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN YHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFTE AMAVHPKGSAIMSPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFY ATGFMGYFYILTFIIGFGAIMLVGANPAYKDAAGALIGGNNMAAVHLANAVGGNLFLGFI SAVAFATILAVVAGLTLAGASAVSHDLYANVFRKGATEREELKVSKITVLVLGVIAIVLG VLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMMGGWLGLLTAVVLMVLGP TIWVQILGHEKAIFPYEYPALFSISVAFLGIWFFSATDNSEEGNREREQFRAQFIRSQTG YGVEQGRAH >gi|283548473|gb|GG730304.1| GENE 63 66356 - 67045 910 229 aa, chain - ## HITS:1 COG:STM4272 KEGG:ns NR:ns ## COG: STM4272 COG1346 # Protein_GI_number: 16767522 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 362 96.0 1e-100 MSNFQLSVLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLVLMLVFGHISWQNYIGE SHWLLWLLGPATIAFAVPVYDNLAVIKRHWMSLTAGVVTATLVAVTSSVWLARLFMLPDE IQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFGMAVGDVLFLRLSIREGMAKG AGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMVLVAPLVARLMF >gi|283548473|gb|GG730304.1| GENE 64 67038 - 67448 365 136 aa, chain - ## HITS:1 COG:STM4271 KEGG:ns NR:ns ## COG: STM4271 COG1380 # Protein_GI_number: 16767521 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Salmonella typhimurium LT2 # 1 136 1 136 136 177 90.0 3e-45 MAVAISRVTPAVIHRLQIPVQVLLYAGLFVFAQYLVSWLNLPLPANLVGMVLMLALIICR VIPLNWIRAGARWLLAEMLLFFVPAVVAVVNYTQLLLVDGWRIFSVIALSTLMVLGATAW VVDKVYRYEMSRLNRE >gi|283548473|gb|GG730304.1| GENE 65 67547 - 68440 242 297 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|30995401|ref|NP_438934.2| transcriptional regulator [Haemophilus influenzae Rd KW20] # 1 291 1 297 301 97 25 2e-19 IMDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRRLLLTD TGQVVFERGLAILAEFRQLEAELSDINHLNKGLLRLGIPPMVGMLMAGPISLFRQRYPGV ELKVAEFGSLTVQQAVMNGELDIAMTALPVEEDSGLATLPLFSHPLCVLVPRSGQWTTCD SISPEALAEHPLLIYNEDFALSRQLLELFNQHNVKPRIAVRSGQWDFLAAMVQAGVGIAI LPEPICQRLDKQTLRWIPLESDLRWQLGMIWREGVYLSHSAQAWLKCCEGFWLTQES >gi|283548473|gb|GG730304.1| GENE 66 68514 - 68873 97 119 aa, chain - ## HITS:1 COG:yafM KEGG:ns NR:ns ## COG: yafM COG1943 # Protein_GI_number: 16128214 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli K12 # 2 118 46 162 165 184 77.0 3e-47 MKPFYINAWVVLPEHMHCIWTLPENDADFSSRWREIKKHFTRSFSARHIWQPRFWEHTIR DEHDYRQHVDYIYINPVKHGWVKQVQAWPFSTFHRDVRRGLYPQNWAGEIMDFNAGERA >gi|283548473|gb|GG730304.1| GENE 67 69461 - 71080 1962 539 aa, chain - ## HITS:1 COG:STM4269 KEGG:ns NR:ns ## COG: STM4269 COG0025 # Protein_GI_number: 16767519 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Salmonella typhimurium LT2 # 1 539 10 548 548 954 97.0 0 MTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFAD GWKTPTREFLEHGREIFGLALALVLVTVVGIGFMIYWLVPGIPLIPAFALAAVLSPTDAV ALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMVFTVGGATLEFFKVA IGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVA AGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLAAAEVDP NVEIWMLFTDIVLIYAALMLVRFGWLWTMKKFSLRFLKKKPMEFGSWTTREILIASFAGV RGAITLAGVLSIPLLLPDGSGFPARYELIFLAAGVILFSLFVGVVMLPILLQHLEVADHS QQQKEERIARAATAEVAIVAIQKMEERLAADSEENIDNQLLTEVSSRVIGNLRRRADGRN DVESSMQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ >gi|283548473|gb|GG730304.1| GENE 68 71088 - 71288 89 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|291086662|ref|ZP_06571610.1| ## NR: gi|291086662|ref|ZP_06571610.1| hypothetical protein CIT292_11145 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11145 [Citrobacter youngae ATCC 29220] # 1 66 1 66 66 127 100.0 2e-28 MVKKISMRSLFAMFLMICDKGVVPQFYLLESNAKDNECVLKIKTGGLSHPFVGASSKQNQ IAQPPA >gi|283548473|gb|GG730304.1| GENE 69 71264 - 72613 1880 449 aa, chain - ## HITS:1 COG:STM4268 KEGG:ns NR:ns ## COG: STM4268 COG2252 # Protein_GI_number: 16767518 # Func_class: R General function prediction only # Function: Permeases # Organism: Salmonella typhimurium LT2 # 1 449 1 449 449 677 97.0 0 MSTPSARTGGSLDAWFKISHRGSTVRQEIVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV FVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL FTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFD TFPVIMSLVGLAVIIGLEKLKVSGGILLTIIGISIVGLIFDPAVHFSGIFAMPSLSDENG NSLIGSLDIMGALNPIVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALT TDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVY ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRI VSGEWRKLNIGTVVIAIALVAFYAGGWAI >gi|283548473|gb|GG730304.1| GENE 70 72992 - 73156 84 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPVFVFHSIPLVHGRVSPDINTPQSSTFGEVPVCVDKVSVSQPSLFASELIVF >gi|283548473|gb|GG730304.1| GENE 71 73218 - 73676 381 152 aa, chain - ## HITS:1 COG:ECs5045 KEGG:ns NR:ns ## COG: ECs5045 COG0789 # Protein_GI_number: 15834299 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Escherichia coli O157:H7 # 1 152 1 152 154 284 93.0 4e-77 MEKKLPRIKALLTPGEVAKRSGVAVSTLHFYESKGLISSMRNSGNQRRYKRDVLRYVAII KIAQRIGIPLATIGDALGVLPEGHSLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI GCGCLSRSDCPLRNPGDQLGAQGTGARLLEDD >gi|283548473|gb|GG730304.1| GENE 72 73763 - 74086 295 107 aa, chain + ## HITS:1 COG:STM4265 KEGG:ns NR:ns ## COG: STM4265 COG2207 # Protein_GI_number: 16767515 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Salmonella typhimurium LT2 # 1 107 1 107 107 183 95.0 5e-47 MSHQQIIQTLIEWIDEHIDQPLNIEAVAKKSGYSKWYLQRMFRTVMRQTLGDYIRQRRLL LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL >gi|283548473|gb|GG730304.1| GENE 73 74089 - 75675 956 528 aa, chain - ## HITS:1 COG:STM4264 KEGG:ns NR:ns ## COG: STM4264 COG4943 # Protein_GI_number: 16767514 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein containing sensor and EAL domains # Organism: Salmonella typhimurium LT2 # 1 528 1 528 533 823 74.0 0 MNHSARRKMLKFLGTFMVVLLPVVLSLWFAHIRAMSETRNHLRSFAQLVLNKTELVILQA DLARDMAQLYEGKMCSPAHQKSMLNIIRGRLYISELIYAQGDRFLCSTSLIPSVPYIMPT ADYKRTPDISIYYYRDTPFFAGYKMTYMQRGNYVVVINPLSYSEVMSDDPDLSWGVYDTV TDTFFSASEGANIAKFSPLVRGEASTFQQDERFFTIVHSEKRPIAIIVSTSGVRVNQMFC HEAMLTVPFGIICSILMLLMWWRTRQEYLSPRRLLKRAIKKRQLCLYYQPIIDIKNGQCV GAEALLRWPGCKGEVMSPTEFIPLAEKEGMIERITDYVVEEVFNDLGNFLSAHPQLYISI NLSASDFHSSRLIALIAEKNHEYSVAAQQIKVEVTERGFIDVHKMTPVIQAFRQAGFEVA FDDFGTGYSNLHNLSALNIDILKIDKSFISTLATNSTSHLIAEHIIEMAQSLHLKTIAEG VETAEQIEWLLERGVQYCQGWYFAKALPPQEFMHWIQRSPAILTQGGQ >gi|283548473|gb|GG730304.1| GENE 74 76225 - 76506 333 93 aa, chain + ## HITS:1 COG:no KEGG:ROD_34441 NR:ns ## KEGG: ROD_34441 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 93 18 110 110 147 89.0 1e-34 MATITTSVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISSGLGLVFACWFATGLLG ITLVDVSAIWNNIESVMVEVMSHTPPDWPMVLT >gi|283548473|gb|GG730304.1| GENE 75 76574 - 77098 657 174 aa, chain - ## HITS:1 COG:ECs5041 KEGG:ns NR:ns ## COG: ECs5041 COG0629 # Protein_GI_number: 15834295 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Escherichia coli O157:H7 # 1 174 1 178 178 259 94.0 1e-69 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL FGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGG APAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF >gi|283548473|gb|GG730304.1| GENE 76 77350 - 80172 3325 940 aa, chain + ## HITS:1 COG:uvrA KEGG:ns NR:ns ## COG: uvrA COG0178 # Protein_GI_number: 16131884 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Escherichia coli K12 # 1 940 1 940 940 1858 97.0 0 MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVIKERKGEHTKTLENLAGQGYIRARID GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWASLNPAVHKVVLYGSGKENIEFKY MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH VFVENTPLPAISDMSIGHAMDFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT VIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLDDIMAVPESLTGQYMSGKRKIDV PKQRVAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQT ALNGATLAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL >gi|283548473|gb|GG730304.1| GENE 77 80313 - 80669 361 118 aa, chain - ## HITS:1 COG:ECs5039 KEGG:ns NR:ns ## COG: ECs5039 COG2315 # Protein_GI_number: 15834293 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Escherichia coli O157:H7 # 1 117 1 117 118 200 92.0 6e-52 MTNSELLQYCMAKTGAEQSVHSDWKATQIKVEDVLFAMVKEVEERPAVSLKTSPELAELL RQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNTLPEDKRRILAQP >gi|283548473|gb|GG730304.1| GENE 78 80796 - 81509 725 237 aa, chain - ## HITS:1 COG:STM4249 KEGG:ns NR:ns ## COG: STM4249 COG3700 # Protein_GI_number: 16767499 # Func_class: R General function prediction only # Function: Acid phosphatase (class B) # Organism: Salmonella typhimurium LT2 # 1 237 1 237 237 457 94.0 1e-129 MRKFTLALSAVCLLFTLNQPAQALVSSPSQLNPGTNVAKLAEQAPIHWVSVAQIENSLTG RPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEVAR QLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAANMNPVIFAGDKPGQNTKTQW LQDKNVRMFYGDSDNDITAARDVGIRGIRILRASNSTYKPLPQAGAFGEEVIVNSEY >gi|283548473|gb|GG730304.1| GENE 79 81753 - 82946 1215 397 aa, chain - ## HITS:1 COG:tyrB KEGG:ns NR:ns ## COG: tyrB COG1448 # Protein_GI_number: 16131880 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Escherichia coli K12 # 1 397 1 397 397 745 90.0 0 MFQKVDAYAGDPILSLMERFKEDSRSDKVNLSIGLYYNEDGIIPQLKAVAEAEARLNAKP HGASLYLPMEGLNTYRHTIAPLLFGSDHPVLQQQRVATIQTLGGSGALKVGADFLKRYFP DSGVWVSDPTWENHIAIFEGAGFEVSTYPWYDNETNGVRFNDLLATLSTLPARSIVLLHP CCHNPTGADLRPAQWDAVIEILKSRDLIPFLDIAYQGFGGGMEEDAYAIRAIASAGLPAL VSNSFSKIFSLYGERVGGLSVVCEDADTASRVLGQLKATVRRNYSSPPNFGAQVVATVLG DDVLKANWLAEVEAMRTRILAMRQELVNVLNTEIPGRNFDYLLQQRGMFSYTGLSAAQVD RLRDEFGVYLIASGRMCVAGLNHANVQRVAKAFAAVM >gi|283548473|gb|GG730304.1| GENE 80 83076 - 84155 1186 359 aa, chain - ## HITS:1 COG:alr KEGG:ns NR:ns ## COG: alr COG0787 # Protein_GI_number: 16131879 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Escherichia coli K12 # 1 359 1 359 359 677 93.0 0 MQAATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADAFGVARL EEALRLRAGGITQPVLLLEGFFDATDLPTISAQRLHTAVHNLEQLEALEAAKLAEPVTVW MKLDTGMHRLGVRPEQAEAFYQRLTQCENVRQPVNIVSHFARADEPECGATEKQLDIFNR FCEGKPGQRSIAASGGILLWPQSHFDWARPGLILYGVSPLENHSIGADFGCQPVMSLTSS LIAVREHKAGEPVGYGGTWQSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGR VAMDMICVDLGPEAQDKAGDSVILWGEGLPVERIAEMTKVSAYELITRLTSRVAMKYID >gi|283548473|gb|GG730304.1| GENE 81 84301 - 85716 1486 471 aa, chain - ## HITS:1 COG:dnaB KEGG:ns NR:ns ## COG: dnaB COG0305 # Protein_GI_number: 16131878 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Escherichia coli K12 # 1 471 1 471 471 871 97.0 0 MAGNKPFNKQQTDARERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVAEDF YTRPHRHIFTEMHRLQEMGKPIDLITLAESLEVQGQLDSVGGFAYLAELSKNTPSAANIS AYADIVRERAVVRDMISVANEIAEAGFDPQGRSSEDLLDLAESRVFKIAESRANKDEGPK NITDVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTF AMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGT MGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPSLSDNRTLE IAEISRSLKALAKELHVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR DEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE >gi|283548473|gb|GG730304.1| GENE 82 85781 - 86764 986 327 aa, chain + ## HITS:1 COG:STM4245 KEGG:ns NR:ns ## COG: STM4245 COG0604 # Protein_GI_number: 16767495 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Salmonella typhimurium LT2 # 1 327 1 327 327 578 90.0 1e-165 MATRIEFHKHGGPDVLKAVEFTPVDPAENEIQVENKAIGINYIDTYIRSGLYPPPSLPSG LGTEAAGVVSKVGSKVTHIKAGDRVVYAQSALGAYSSVHNVPADKAAILPNAISFEQAAA SFLKGLTVFYLLRKTYEIQPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQI AQQAGAWQVINYREESIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGN ASGPVTGVNLGILNQKGSLYVTRPSLQGYITNHHELTEASNELFSLIASGVIKVDVAPGQ TFALHDAQRAHEVLESRATQGSSLLIP >gi|283548473|gb|GG730304.1| GENE 83 86992 - 87234 360 80 aa, chain - ## HITS:1 COG:no KEGG:ECIAI39_4470 NR:ns ## KEGG: ECIAI39_4470 # Name: pspG # Def: phage shock protein G # Organism: E.coli_IAI39 # Pathway: not_defined # 1 80 71 150 150 116 87.0 4e-25 MLELLFVIGFFIMLMVTGVSLLGILAALMVATAVMFLGGMLALMIKLLPWLLLAVAIVWV IKAIKAPKVPQYQRNNRRFY >gi|283548473|gb|GG730304.1| GENE 84 87368 - 88366 1086 332 aa, chain - ## HITS:1 COG:ECs5031 KEGG:ns NR:ns ## COG: ECs5031 COG0042 # Protein_GI_number: 15834285 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-dihydrouridine synthase # Organism: Escherichia coli O157:H7 # 5 332 11 345 345 650 91.0 0 MLPESQSTAFPAHRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIVHGKGDYLA YSEEEHPVALQLGGSDPAALAQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQ LVADCVKAMRDVVSIPVTVKTRIGIDDLDSYEFLCDFINTVAGKGECEMFIIHARKAWLS GLSPKENREIPPLDYARVYQLKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQ NPGILASVDREIFAAATHDADPVAVVRAMYPYIERELSQGTYLGHVTRHMLGLFQGIPGA RQWRRYLSENAHKAGADINVLEHALKLVADKR >gi|283548473|gb|GG730304.1| GENE 85 88474 - 88962 445 162 aa, chain - ## HITS:1 COG:VCA0258 KEGG:ns NR:ns ## COG: VCA0258 COG3837 # Protein_GI_number: 15601026 # Func_class: S Function unknown # Function: Uncharacterized conserved protein, contains double-stranded beta-helix domain # Organism: Vibrio cholerae # 1 161 1 162 170 156 48.0 1e-38 MKRPDCIRHWREVEGADDSTYPDSNELFSIGAPLARKLGLGRLGIHHERLPPGRRTSYPH AESDEEEFIYVLEGYPEAWINGYLWKLEPGDSVGFPAGTGVCHTFINNTSEEVRLLVVGE ANKKYNRIYYPLNPVYAATREDRWVDHPPQFFGPHDGKPGRK >gi|283548473|gb|GG730304.1| GENE 86 89077 - 89595 393 172 aa, chain + ## HITS:1 COG:STM4241 KEGG:ns NR:ns ## COG: STM4241 COG0735 # Protein_GI_number: 16767491 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Salmonella typhimurium LT2 # 1 169 1 169 171 316 94.0 2e-86 MDKTTTHELLAQAEKLCAQRNVRLTPQRLEVLRLMSLQEGAISAYDLLDLLRETEPQAKP PTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHSSAMFICDRCGVVKEECAEGVEDI MHTLAAKMGFALRHNVIEAHGLCPACVEVESCRHPGECQHDHSILVKKKVGR >gi|283548473|gb|GG730304.1| GENE 87 89637 - 89846 398 69 aa, chain - ## HITS:1 COG:STM4240 KEGG:ns NR:ns ## COG: STM4240 COG3237 # Protein_GI_number: 16767490 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 69 2 70 70 92 91.0 1e-19 MNKDEVGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKVQERYGYAKDQAEKEVTD WETRNDYRW >gi|283548473|gb|GG730304.1| GENE 88 89978 - 91303 1559 441 aa, chain - ## HITS:1 COG:STM4238 KEGG:ns NR:ns ## COG: STM4238 COG0534 # Protein_GI_number: 16767488 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Salmonella typhimurium LT2 # 1 441 1 441 441 647 91.0 0 MPFFTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM LLLFLRMSTTGLTAQAFGAKNPQALARALVQPLMLALGAGLLIVLFRTPIIDLALHIVGG SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLIVGNVLNIVLDLWLV MGLHMNVQGAALATAIAEYATLLIGLMMVRKVLHMRGISLAMLKLAWRGNFRRLLALNRD IMLRSLLLQLCFGAITVLGARLGGDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYG ARDGSQLLDVWRAACRQSGIVAILFSLVYALFGEHIIALLTSLSQIQLLADRYLIWQVIL PLVGVWCYLLDGMFIGATRAAEMRNSMAVAATGFALTLLALPLLGNHGLWLALTVFLALR GLSLAFIWRRHWRNGTWFVKA >gi|283548473|gb|GG730304.1| GENE 89 91434 - 92042 664 202 aa, chain - ## HITS:1 COG:ECs5026 KEGG:ns NR:ns ## COG: ECs5026 COG1974 # Protein_GI_number: 15834280 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 202 1 202 202 375 98.0 1e-104 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVLEIVS GASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSM KDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVD LREQNFTIEGLAVGVIRNGEWL >gi|283548473|gb|GG730304.1| GENE 90 92152 - 92520 474 122 aa, chain - ## HITS:1 COG:STM4236 KEGG:ns NR:ns ## COG: STM4236 COG0818 # Protein_GI_number: 16767486 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Salmonella typhimurium LT2 # 1 122 1 122 122 193 92.0 5e-50 MANNTTGFTRIIKAAGYSLKGFRAAWINEAAFRQESVAVLLGVAIACWLDVDAITRVLLI GSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLLSIFVALITWGILLWSH LR >gi|283548473|gb|GG730304.1| GENE 91 92692 - 95112 2628 806 aa, chain + ## HITS:1 COG:plsB KEGG:ns NR:ns ## COG: plsB COG2937 # Protein_GI_number: 16131867 # Func_class: I Lipid transport and metabolism # Function: Glycerol-3-phosphate O-acyltransferase # Organism: Escherichia coli K12 # 1 806 21 826 827 1551 94.0 0 MSGWPRIYYKLLNLPLSVLVKSKSIPAEPAPELGLDTSRPIMYVLPYNSKADLLTLRAQC LVHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHNYLDLHRSNPDLDV QMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVSWLGRDSFVRFSPSVSLRRMADEH GTDKIIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASKAIARAVEDEARSKKIS HEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHEI VYVPCHRSHMDYMLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNK LYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLV PIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLN QHVPEWRESIDPIESIRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSL TREQLTEQLDCYLSLLRNVPYAADATVPAQSASELIDHALQMNKFEVEKDTIGDIIILPR EQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRAALLQHIEALYPMLKAELFLRWERD ELAGVIDELASEMQRQGLITLDDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSAN PSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDTGDAEPEET MKIYQMLAELVTSDVRLTIESATQGE >gi|283548473|gb|GG730304.1| GENE 92 95165 - 96037 1089 290 aa, chain - ## HITS:1 COG:ECs5023 KEGG:ns NR:ns ## COG: ECs5023 COG0382 # Protein_GI_number: 15834277 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases # Organism: Escherichia coli O157:H7 # 1 290 1 290 290 487 94.0 1e-137 MEWSLTQSKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMR AAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARTLFVVLVLLAFLLVLTLNTMTIL LSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWA VAYDTQYAMVDRDDDLKIGIKSTAILFGQNDKLIIGILQVGVLALMALVGWLNGLGLGYY WSLLVAGALFVYQQKLIANRERDACFKAFMNNNYVGLVLFLGLAMSYWHL >gi|283548473|gb|GG730304.1| GENE 93 96051 - 96548 578 165 aa, chain - ## HITS:1 COG:ubiC KEGG:ns NR:ns ## COG: ubiC COG3161 # Protein_GI_number: 16131865 # Func_class: H Coenzyme transport and metabolism # Function: 4-hydroxybenzoate synthetase (chorismate lyase) # Organism: Escherichia coli K12 # 1 165 38 202 202 283 90.0 8e-77 MPHPALTQLRALRYFDEIPALDPQLLDWLLLEDSMTKRFEQQGKQVTVTLIREAFVGQNE VAEELMLLPKESRYWLREILLCADGEPWLAGRTVVPESTLCGPELALQNLGKTPLGRYLF TSSTLTRDFIEIGRDAALWGRRSRLRLSGKPLMLTELFLPASPLY >gi|283548473|gb|GG730304.1| GENE 94 96729 - 97673 924 314 aa, chain - ## HITS:1 COG:no KEGG:CKO_03878 NR:ns ## KEGG: CKO_03878 # Name: not_defined # Def: maltose regulon periplasmic protein # Organism: C.koseri # Pathway: not_defined # 1 314 1 313 313 466 91.0 1e-130 MKMKKSLVALCLSAGLFASAPGISLADVNIVPQNTTAAPTIPTAALQQLTWTPVDQTKTQ STQLATAGQRLDVAGITGPVAAWSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTP SAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTDKDLQQTTTLLDPAKA YAKGVGNAVPDIPDPIARHTTDGLLKLKVKTSSSSSVLVGPLFGSSGPGPVTVGNTAAPA VTYAAPAAVAAPAPQPVKKSEPMLNDTESYFNQAIKDAVAKGDVDKALKLLDEAERLGSK SARSTFISSVKGKG >gi|283548473|gb|GG730304.1| GENE 95 97787 - 99130 1566 447 aa, chain - ## HITS:1 COG:STM4231 KEGG:ns NR:ns ## COG: STM4231 COG4580 # Protein_GI_number: 16767481 # Func_class: G Carbohydrate transport and metabolism # Function: Maltoporin (phage lambda and maltose receptor) # Organism: Salmonella typhimurium LT2 # 1 447 2 452 452 749 87.0 0 MITLRKLPLAVAVAAGIMSVQAMAVDFHGYARSGIGWTGSGGEQQCFQATGAQSKYRLGN ECETYAEIKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEGTDPAFREANVQGKNLIEWLP GSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDLGFGKLSLAASRSQEAGGSYAFS SQNIYDRTKDTANDVFDVRLAQLATNTDGMLELGVDYGRANTTDDYSLADGASKDGWMFT AEHTQSMLKGYNKFVVQYATDSMTTQGKGLNQGSYGSSTGVDDNGNKVANNFINNNGSLV RILDHGAISLGDKWDLMYVGMYQNLDMDNDLGTEWYTVGIRPMYKWTPIMSTLMEVGYDN VKSQQTGDRNSQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEEWGYVKNGNDVTKYAA ATNSGISTTSRGDSDEWSFGAQMEIWW >gi|283548473|gb|GG730304.1| GENE 96 99222 - 100331 1174 369 aa, chain - ## HITS:1 COG:STM4230 KEGG:ns NR:ns ## COG: STM4230 COG3839 # Protein_GI_number: 16767480 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Salmonella typhimurium LT2 # 1 369 1 369 369 711 97.0 0 MASVQLRNVTKAWGDVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL FIGETRMNDIPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVMNQRVNQVAEV LQLAHLLERKPKALSGGQRQRVAIGRTLVAEPRVFLLDEPLSNLDAALRVQMRIEISRLH KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN FLPVKVTATAIDQVQVELPNRQQVWLPVDSAHVQVGANMSLGIRPEHLLPSEIADVTLEG EVQVVEQLGHETQIHIQIPAIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTAC RRLHQEPGV >gi|283548473|gb|GG730304.1| GENE 97 100692 - 101882 1702 396 aa, chain + ## HITS:1 COG:ECs5017 KEGG:ns NR:ns ## COG: ECs5017 COG2182 # Protein_GI_number: 15834271 # Func_class: G Carbohydrate transport and metabolism # Function: Maltose-binding periplasmic proteins/domains # Organism: Escherichia coli O157:H7 # 1 396 1 396 396 739 95.0 0 MNIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK VTIEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW DAVRYNGKLIAYPIAVEALSLIYNKDLVPNPPKTWEEIPALDKELKAKGKSALMFNLQEP YFTWPLIAADGGYAFKFENGKYDVKDVGVDSAGAKAGLTFLVDLIKNKHMNADTDYSIAE AAFNKGDTAMTINGPWAWSNIDKSKVNYGVTLLPTFKGKPSKPFVGVLSAGINAASPNKE LAKEFLENYLLTDQGLDEVNKDKPLGAVALKSFQEQLAKDPRIAATMDNAQKGEIMPNIP QMSAFWYAVRTAVINAASGRQTVDAALKDAQGRITK >gi|283548473|gb|GG730304.1| GENE 98 102013 - 103557 2100 514 aa, chain + ## HITS:1 COG:STM4228 KEGG:ns NR:ns ## COG: STM4228 COG1175 # Protein_GI_number: 16767478 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, permease components # Organism: Salmonella typhimurium LT2 # 1 514 1 514 514 911 93.0 0 MDVIKKKHWWQSDALKWSVMGLLGLLVGYLVVLMYAQGEYLFAIMTLILSSAGLYIFANR KTYAWRYVYPGVAGMGLFVLFPLICTIAIAFTNYSSTNQLTFERAQQVLMDRSYQAGKTY NFGLYPAGDEWQLALTDGETGKNYVSDAFKFGGEQKLQLKEIEALPAGERATLRIITQNR QALTQLTAILPDESKVIMSSLRQFSGTQPLYSLADDGTLTNNQSGVKYRANNDIGYYQVI NADGSWGTEKLSPGYTVTIGWDNFTRVFTDEGIQKPFFAIFVWTVVFSVLTVILTVAVGM VLACLVQWESLKGKAIYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPA WFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLP LLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVSYTYRIAFEGGG GQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD >gi|283548473|gb|GG730304.1| GENE 99 103572 - 104462 1234 296 aa, chain + ## HITS:1 COG:STM4227 KEGG:ns NR:ns ## COG: STM4227 COG3833 # Protein_GI_number: 16767477 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type maltose transport systems, permease component # Organism: Salmonella typhimurium LT2 # 1 296 1 296 296 519 98.0 1e-147 MAMVQPKSQKLRLLITHLGLLIFIAAIMFPLLMVIAISLREGNFATGSLIPENISWEHWR LALGFSVEHADGRFTPPPFPVLLWLWNSVKIAGITAIGIVALSTTCAYAFARMRFPGKAT LLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVIFAYLGGIALHVWTIKGY FETIDGSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDV NSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITLVFLLAQRWLVNGLTAGGVKG >gi|283548473|gb|GG730304.1| GENE 100 104787 - 106262 1519 491 aa, chain + ## HITS:1 COG:ECs5014 KEGG:ns NR:ns ## COG: ECs5014 COG0477 # Protein_GI_number: 15834268 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Escherichia coli O157:H7 # 1 486 1 486 491 887 93.0 0 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQHLSESAANSLLGFC VASALIGCIIGGALGGYCSNRFGRRDSLKIAALLFFISGIGSAWPELGFTTINPDNAVPV YLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC VNYFIARSGDANWLNTDGWRYMFASESIPALLFLLLLYTVPESPRWLMARGKHEQAEGIL RKIMGNSLATQAMQEINQSLEHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA PEVFKTLGASTDVALLQTIIVGVINLSFTVLAIMTVDKFGRKPLQIIGALGMALGMFSLG TAFYTQASGLIALLSMLFYVAAFAMSWGPVCWVLLAEIFPNAIRGKALAIAVAAQWLANY FVSWTFPMMDKNSWLVSHFHNGFSYWIYGCMGILAALFMWKFVPETKGKTLEELEELWEP AAEKAKPASAQ >gi|283548473|gb|GG730304.1| GENE 101 106308 - 106718 577 136 aa, chain - ## HITS:1 COG:yjbA KEGG:ns NR:ns ## COG: yjbA COG3223 # Protein_GI_number: 16131856 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli K12 # 1 136 1 136 136 196 97.0 1e-50 MTSLSRPRVEFISTILQTVLNLGLLSLGLILVVFLGKETLHLADVLFAPEQTSKYELVEG LVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKAPMDVLIYSAAILL LVITLWLCNSKRLKRE >gi|283548473|gb|GG730304.1| GENE 102 106858 - 107367 384 169 aa, chain + ## HITS:1 COG:CC2073 KEGG:ns NR:ns ## COG: CC2073 COG0454 # Protein_GI_number: 16126312 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Caulobacter vibrioides # 4 167 12 177 178 60 28.0 2e-09 MLKIQMATVDDASLLSSMGYTSYRHHFAPLWKNPGELDAYLEQEYSLPAISSSLAEPGTF WLIAFADAPVGFAKYSLRHSIDSEGRSGALLHKIYLMPDETGKQHGELLFAEVVRQAKAQ GEKWLWLEVLADNPKARQFYERQGMTYVKEMAFTTASQASILYVMEKQI >gi|283548473|gb|GG730304.1| GENE 103 107381 - 107833 343 150 aa, chain + ## HITS:1 COG:TM0759 KEGG:ns NR:ns ## COG: TM0759 COG0110 # Protein_GI_number: 15643522 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Thermotoga maritima # 11 148 85 235 254 66 31.0 1e-11 MNIRQSAVRNVTCGENVVVYEPANLYDCTLADNVFVGPFVEIQGNTQIGANSKIQSHTFI CEYVTIGSRCFIGHGVMFANDMFRQGKPNADRTSWGRITIGNDVSIGSGATILAVTICDG AVIGAGSVVTKSITEKGVYAGNPAKLLRRL >gi|283548473|gb|GG730304.1| GENE 104 107919 - 110015 2197 698 aa, chain - ## HITS:1 COG:no KEGG:CKO_03888 NR:ns ## KEGG: CKO_03888 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 698 1 698 698 1365 94.0 0 MRKTYLLSFLALGVSVACHGETWPAPIGPSQSDFGGVGLLQTPTARMAREGEMSLNYRDN DQYRYYSASVQLFPWLETTLRYTDVRTKKYSSVESFSGDQTYKDKAFDLKLRLWEESYWM PQVAVGARDIGGTGLFDAEYIVANKAWGPFDFSLGLGWGYLGTSGNISNPFCSYSDKFCY RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLDQKSK FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPNYNDNARPKYQPQPQDAILQ HSVVANQLTLLKYNAGLADPKIQVQGDTLYVTGEQVKYRDSREGIERANRIVMNDLPDGI RTIRITENRLNLPQVTTETDVSSLKRHLEGEPLGHQTQLAQKRVEPVVPKTTEQGWYIDK SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWVTDHLLTTGSLFANLANNYDKFNYT NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQSLGNGFYGQVYGGYLETMYGGAGAEV LYRPLDSNWAFGIDANYVKQRDWRSAQDMMKFTDYSVKTGHLTAYWNPSFAQDVLVKASV GQYLAGDKGGTLEIAKRFDSGVVVGGYATITDASPDEYGEGDFTKGVYVSVPLDLFSSSP TRSRAAIGWTPLTRDGGQQLGRKFGLYDMTSDRSENFR >gi|283548473|gb|GG730304.1| GENE 105 110015 - 110752 648 245 aa, chain - ## HITS:1 COG:no KEGG:CKO_03889 NR:ns ## KEGG: CKO_03889 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 245 1 245 245 391 80.0 1e-107 MIKRAVMALVFSLSVPSVFAAGDVKVMIAGSAEPKILTGAEHLIDLVGQPRLSNSWWPGA VISEERATVEAERQQQALLARLAALSAEESGDDAAAINALRQQIQALKVTGRQKINLDPD VVRVSERGNPPLQGNYTLWVGPQPTDITLFGLLSRPGKQPFMPGRDVASYLDGQSRLSGA DRSYAWVIYPDGRTQKVPIAYWNKRHVEPMPGSIIFVGLSDAVWSSTPDEINADILRTLT QRIPE >gi|283548473|gb|GG730304.1| GENE 106 110749 - 111387 564 212 aa, chain - ## HITS:1 COG:no KEGG:ROD_37231 NR:ns ## KEGG: ROD_37231 # Name: not_defined # Def: putative lipoprotein # Organism: C.rodentium # Pathway: not_defined # 1 211 1 211 211 384 89.0 1e-105 MKRPALILVCLLLQACSATTEGLGHSLWDSVFGTPGVQMTDDEIQNMPYASQYMQLNGGP QLFVVLAFAENGQQKWVTQDQAILVTQHGRIVKTQLGGDNLIEVNNLAADPLIKPNQIAD GATWTRTMGWTEHQQVRYATALSVFTWDGTESIKVGSDETPVRILDEEVTTDQTRWHNRY WIDSEGQIRQSEQYLGAKFFPVKTTLIKAAKS >gi|283548473|gb|GG730304.1| GENE 107 111506 - 111748 182 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKVLYGLWAISALAATSVYAAPVQVGEAAGSAAASVSAGSSSATSASTVSSAVGVALAA TGGGDGSNTGTTTTTTTSTQ >gi|283548473|gb|GG730304.1| GENE 108 112221 - 113867 2229 548 aa, chain - ## HITS:1 COG:ECs5008 KEGG:ns NR:ns ## COG: ECs5008 COG0166 # Protein_GI_number: 15834262 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Escherichia coli O157:H7 # 1 548 1 548 549 1085 95.0 0 MKNINPTQTSAWQALQKHFEEMKDVTIADLFAKDSDRFTKFSATFDDLMLVDFSKNRITE ETLAKLQDLAKETDLAGAIKSMFSGEKINRTEDRAVLHVALRNRSNTPIIVDGKDVMPEV NAVLEKMKTFSEAIISGSWKGYTGKAITDVVNIGIGGSDLGPFMVTEALRPYKNHLNMHF VSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTNAHSARDWFLATAGDNKHVAKHF AALSTNGKAVGEFGIDTANMFEFWDWVGGRYSLWSAIGLSIILSVGFDNFVELLSGAHAM DKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYFQQGNMESNGKY VDRNGNAVDYQTGPIIWGEPGTNGQHAFYQLIHQGTKMVPCDFIAPAITHNPLSDHHPKL LSNFFAQTEALAFGKSREVVEQEYRDQGKDPATLDHVVPFKVFEGNRPTNSILLREITPF SLGALIALYEHKIFTQGAILNIFTFDQWGVELGKQLANRILPELKDGSEVSSHDSSTNGL INRYKSWR >gi|283548473|gb|GG730304.1| GENE 109 114304 - 115653 1813 449 aa, chain + ## HITS:1 COG:lysC KEGG:ns NR:ns ## COG: lysC COG0527 # Protein_GI_number: 16131850 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Escherichia coli K12 # 1 449 1 449 449 749 93.0 0 MTDVVVSKFGGTSVADFDAMNRSADVVLSDANVRVVVLSASAGITNLLVALAEGLEPTER FEKLDAIRQIQFNILERLRYPNVIREEIERLLENITTLAEAASLATSTALTDELVSHGEL MSTLLFVEILRERNVQAQWFDVRKVMRTNDRFGRAEPDVAALAELTTLQLAPRLSEGLVI TQGFIGSESKGRTTTLGRGGSDYTAALLAEALHATRVDIWTDVPGIYTTDPRVVPAAKRI DEIAFEEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPKAGGTLVCNKTQNPPLFR ALALRRKQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTS TGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEPFNIRMICY GASSHNLCFLVPGTEAEQVVQKLHHNLFE >gi|283548473|gb|GG730304.1| GENE 110 115746 - 116672 1212 308 aa, chain + ## HITS:1 COG:STM4195 KEGG:ns NR:ns ## COG: STM4195 COG0385 # Protein_GI_number: 16767445 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Salmonella typhimurium LT2 # 1 305 1 305 313 444 93.0 1e-124 MLATLTRLFPLWALLLSVIAYYTPSTFTPVGPFVPSLLMLIMFGMGVHLKVDDFKRVLSR PAPVAAGIFLHYLVMPLAAWILALAFNMPPELSAGMVLVGSVASGTASNVMIYLAKGDVA LSVTISSVSTVVGVVATPLLTRLYVDAHIQVDVMGMLLSILQIVVIPIALGLVIHHLFPR VVKAVEPYLPAFSMVCILAIISAVVAGSASHIASVGFVVIIAVILHNTIGLLGGYWGGKL FGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAALPGALFSVWHNLSGSLLAGYWSGK PIKEKERR >gi|283548473|gb|GG730304.1| GENE 111 116818 - 117090 343 90 aa, chain + ## HITS:1 COG:no KEGG:CKO_03896 NR:ns ## KEGG: CKO_03896 # Name: not_defined # Def: hypothetical protein # Organism: C.koseri # Pathway: not_defined # 1 90 1 90 90 114 96.0 2e-24 MALPRITQKEMTEREQRELKTLLDRARIAHGRLLTNAETNSIKKEYIDKLMALREAEAKK ARQLKKKQAYKPDAEASFSWSANTPTRGRR >gi|283548473|gb|GG730304.1| GENE 112 117087 - 117962 1022 291 aa, chain - ## HITS:1 COG:ECs5005 KEGG:ns NR:ns ## COG: ECs5005 COG1187 # Protein_GI_number: 15834259 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Escherichia coli O157:H7 # 1 291 1 290 290 488 93.0 1e-138 MLPDSSIRLNKYISESGICSRREADRFIEQGNVFLNGKRATIGDQVKPGDVVKVNGRLIE PREAEDLVFIALNKPVGIVSTTEDSERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHG DLVNKILRAGNDHEKEYLVTVDKPITDDFIRGMGAGVPILGTVTKKCKVKKEAPFVFRIT LIQGLNRQIRRMCEHFGYEVTRLERTRIMNVGLSGLPLGEWRDLTDDELIELFKLIENSS SEAKPKAKAKPKTAGIKRPVVKIEKSAEKEKSRPAANGKRFTSPGRKKKGR >gi|283548473|gb|GG730304.1| GENE 113 118211 - 118528 178 105 aa, chain - ## HITS:1 COG:no KEGG:plu2279 NR:ns ## KEGG: plu2279 # Name: ccdB # Def: cytotoxic protein CcdB # Organism: P.luminescens # Pathway: not_defined # 3 105 2 101 101 81 38.0 1e-14 MEQYCAYENTGSGKSVYPFLISLQHPVAAVLQHVLVAPVIALSQFPNEVPPAKICPVVSI GGQAYVVMTHMMTGIPVKNMGNCVGDLTANRAELRDAIDFLINGY >gi|283548473|gb|GG730304.1| GENE 114 118528 - 118821 233 97 aa, chain - ## HITS:1 COG:no KEGG:CJA_3183 NR:ns ## KEGG: CJA_3183 # Name: ccdA # Def: CcdB antidote CcdA # Organism: C.japonicus # Pathway: not_defined # 27 97 63 133 133 78 53.0 7e-14 MLAYYANLRYVMRTAMGVIMRTVSKVKKSVNVSLAPEILEEARKLKINLSAVLTEALIEK FRENKREEWLRDNKKSIEALNQWVEENGSFSDFQRTF >gi|283548473|gb|GG730304.1| GENE 115 118918 - 119283 417 121 aa, chain - ## HITS:1 COG:no KEGG:ROD_16861 NR:ns ## KEGG: ROD_16861 # Name: not_defined # Def: hypothetical protein # Organism: C.rodentium # Pathway: not_defined # 1 117 1 117 123 160 75.0 2e-38 MADANSTTNACFASSSPIPQADLLYFPLAEACRHLDCSRLTTEENLALSFGCEEALAGMY HTLNFMGESLLTMAGEGQEHFAYESICQLGHSLVNISQLIPALAQLEAKADQQLFVSDSL N >gi|283548473|gb|GG730304.1| GENE 116 119425 - 119586 219 53 aa, chain + ## HITS:1 COG:no KEGG:XBJ1_2654 NR:ns ## KEGG: XBJ1_2654 # Name: not_defined # Def: hypothetical protein # Organism: X.bovienii # Pathway: not_defined # 2 52 18 68 71 78 78.0 1e-13 MNERRGNPPFQFRLDPELRKAMEEAQRQDGDESLAAWIKRIIRKELKQKGIEV >gi|283548473|gb|GG730304.1| GENE 117 119745 - 120062 442 105 aa, chain - ## HITS:1 COG:all1033 KEGG:ns NR:ns ## COG: all1033 COG5606 # Protein_GI_number: 17228528 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Nostoc sp. PCC 7120 # 6 90 8 90 108 57 35.0 9e-09 MSHDVETSSGNVYADLGEYDAEQMQLKAQLAMVIGEILQCKGLTQQQAAQMLGMTQPKLS NLLRGQFRGISEAKMLECLVKLGRDVEIVVGKEGNVQGTLKVSFG >gi|283548473|gb|GG730304.1| GENE 118 120052 - 120411 208 119 aa, chain - ## HITS:1 COG:XFa0034 KEGG:ns NR:ns ## COG: XFa0034 COG4679 # Protein_GI_number: 10956745 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Xylella fastidiosa 9a5c # 3 114 20 131 139 126 58.0 1e-29 MIKLLYWVGHARKDLQGMPEHVRDTFGFALWLAQLGKQHSQTKPLKGFGGAGVLEVVEDY HGNTWRAVYTIQLKNAVYVLHVFQKKSVSGKATPKPEINLIYQRLKAAQRHAQESGYVT >gi|283548473|gb|GG730304.1| GENE 119 120625 - 121314 936 229 aa, chain + ## HITS:1 COG:STM4190 KEGG:ns NR:ns ## COG: STM4190 COG3340 # Protein_GI_number: 16767440 # Func_class: E Amino acid transport and metabolism # Function: Peptidase E # Organism: Salmonella typhimurium LT2 # 1 229 1 229 229 408 87.0 1e-114 MELLLLSNSTLPGKGWMEHALPLIAEQLNGRRTAVFIPFAGVTQTWDEYTAKTAAIFAPM GVNVTGIHTVADPITAIENAELVIVGGGNTFQLLKESRERGLLAPIVDVVKRGALYIGWS AGSNLACQTIRTTNDMPIVDPKGFDALGLFPLQINPHFTNALPEGHKGETREQRIRELLV VAPELTVIGLPEGNWIKVSNGQSVLGGPNTTYIFKAGEEAVAVEAGHCF >gi|283548473|gb|GG730304.1| GENE 120 121443 - 123071 1918 542 aa, chain - ## HITS:1 COG:STM4189 KEGG:ns NR:ns ## COG: STM4189 COG1283 # Protein_GI_number: 16767439 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Salmonella typhimurium LT2 # 1 540 1 540 543 907 95.0 0 MLTLLHLLSAVAMLVWGTHIVRTGVMRVFGARLRTVLSRSVEKKPLAFCAGIGVTALVQS SNATTMLVTSFVAQDLVALTPALVIVLGADVGTALMARILTFDLSWLSPLLIFIGVIFFL GRKQSRVGQLGRVGIGLGLILLALELIVQAVTPITQANGVQVIFASLTGDIMLDALIGAM FAIISYSSLAAVLLTATLTAASIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVAL GSLLFKLVGSLIILPFVHPLANLMDELPLPKSELVIYFHVFYNLVRCIAMVPFAEPMARF CKRIIRDEPELDAHLKPKHLDISALDTPTLALANAAREALRIGDAMEQMMDGLKKVMHGE PREEKELRRMADDINVLYTAIKLYLARMPKDELAEEESRRWAEIIEMSLNLEQASDIVER MGSEIADKSLAARRAFSVEGLKELDALYDQLLSNLQLAMSVFFSGDVTSARRLRRSKHRF RILNRRYSHAHVDRLHQQNVQSIETSSLHLALLGDMQRLNSLFCSVAYSVLEQPDEDDER EY >gi|283548473|gb|GG730304.1| GENE 121 123358 - 127041 4660 1227 aa, chain - ## HITS:1 COG:ZmetH_2 KEGG:ns NR:ns ## COG: ZmetH_2 COG1410 # Protein_GI_number: 15804605 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase I, cobalamin-binding domain # Organism: Escherichia coli O157:H7 EDL933 # 327 1227 1 901 901 1782 96.0 0 MSSKVEQLRQQLNERILVLDGGMGTMIQGYRLNEEDFRGERFADWPCDLKGNNDLLVLSK PEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTA RTPEKPRYVAGVLGPTNRTASISPDVNDPAYRNITFDQLVAAYRESTKALVEGGCDLILI ETVFDTLNAKAAIFAVKTEFEALGVELPIMLSGTITDASGRTLSGQTTEAFYNSLRHADA LTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAAQIREWAE AGFLNVVGGCCGTTPEHIAAMSRAVDGLPPRKLPEIPVACRLSGLEPLNIGDDSLFVNVG ERTNVTGSAKFKRLIKEEKYSEALDVARQQVESGAQIIDINMDEGMLDAEAAMVRFLNLI AGEPDIARVPIMIDSSKWEVIEKGLKCIQGKGIVNSISMKEGVEAFIHHAKLLRRYGAAV VVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQ DFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAG QLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQMAEWRSWDVK KRLEYSLVKGITEFIELDTEEARLQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVK SARVMKQAVAYLEPFIEASKEKGSSNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIIDL GVMVPAEKILKTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKA HTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPR TPPVTLAAARENDLAFDWESYTPPVAHRLGVQAVEASIETLRNYIDWTPFFMTWSLAGKY PRILEDEVVGEEAKRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRT HVINVSHHLRQQTEKVGFANYCLSDFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQH DDYNKIMVKAIADRLAEAFAEYLHERVRKVYWGYAANENLSNEELIRENYQGIRPAPGYP ACPEHTEKATIWELLDVEAHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQV EDYALRKGMSVAEVERWLAPNLGYDAD >gi|283548473|gb|GG730304.1| GENE 122 127236 - 128060 869 274 aa, chain + ## HITS:1 COG:STM4187 KEGG:ns NR:ns ## COG: STM4187 COG1414 # Protein_GI_number: 16767437 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Salmonella typhimurium LT2 # 1 274 1 274 274 504 95.0 1e-143 MVAIVPAKRGRKPAAATTPATGQVQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTT HRLLTTMQQQGFVRQVGELGHWAVGAHAFIVGSSFLQSRNLLAIVHPILRKLMEDSGETV NLAVLDQSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASGAGKAFLSQLSEEQVTGLLHR KGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCVASCIYDEHREPFAAISI SGPISRITDDRVTEFGAMAIKAAKEVTLAYGGFR >gi|283548473|gb|GG730304.1| GENE 123 128105 - 129886 1740 593 aa, chain - ## HITS:1 COG:STM4185 KEGG:ns NR:ns ## COG: STM4185 COG4579 # Protein_GI_number: 16767435 # Func_class: T Signal transduction mechanisms # Function: Isocitrate dehydrogenase kinase/phosphatase # Organism: Salmonella typhimurium LT2 # 1 573 1 573 583 1120 94.0 0 MTRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEHADWHAVQQAMKSRIHLYDHHVGL VVEQLRCITDGKSTDADFLLRVKEHYTRLLPDYPRFEIAESFFNSVYCRLFDHRSLTPER LFIFSSQPERRFRTIPRPLAKDFFPDTGWEWLLTRVLSDLPLRLPWQNKHRDIHYIIEHL TETLGADVLPRCHLQVANELFYRNKAAWLVGKLMTPSGTLPFLLPIHRTDEGELFVDTCL TTTAEASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYRE YLLYLAHCDEQFIEAPGIRGMVMLVFTLPGFDRVFKIIKDKFAPQKEMSAAHVRACYQLV KEHDRVGRMADTQEFENFVLDKRQIDPALMALLLQEAPEKITDLGDQIVIRHLYIERRMV PLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEIC YMTEVNFRHIPPPRYPEDEMSAEPWYSVSPGDVFPEEFRHWLCADPRIGPLFEEMHADLF SADYWRGLQARIREGHVEDVYAYRRRQRFSVRYETDRRPDKALAPPSGNVRRA >gi|283548473|gb|GG730304.1| GENE 124 129989 - 131308 1490 439 aa, chain - ## HITS:1 COG:STM4184 KEGG:ns NR:ns ## COG: STM4184 COG2224 # Protein_GI_number: 16767434 # Func_class: C Energy production and conversion # Function: Isocitrate lyase # Organism: Salmonella typhimurium LT2 # 6 439 1 434 434 855 97.0 0 MEHLHMKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWR LLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLASSMYPDQSLYPAN SVPAVVDRINNTFRRADQIQWSSGIEPNDPRYVDYFLPIVADAEAGFGGVLNAFELMKSM IEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVMGVPTLVIARTDA DAADLITSDCDAYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDL ELAKRFADAIHAKFPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKYQFITLAGI HSMWFNMFDLAHSYAQGEGMRHYVEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKVTTII QGGASSVTALTGSTEESQF >gi|283548473|gb|GG730304.1| GENE 125 131325 - 132926 1726 533 aa, chain - ## HITS:1 COG:STM4183 KEGG:ns NR:ns ## COG: STM4183 COG2225 # Protein_GI_number: 16767433 # Func_class: C Energy production and conversion # Function: Malate synthase # Organism: Salmonella typhimurium LT2 # 1 533 1 533 533 1054 93.0 0 MNQQATTTDELVFTRPRGEQEQQILTGEAVEFLTELVTRFTPKRNKLLAARIQQQQDIDN GKLPDFISETASIRDGDWKIRGIPDDLLDRRVEITGPVERKMVINALNANVKVFMADFED SLAPEWSKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNPALLVCRVRGLHLPEKHVTWR GESIPGSLFDFALYFFHNYKTLLAKGSGPYFYLPKTQAWQEAAWWSEVFSYAEDRFNLPR GTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNHPDRVLPDRQV VTMDKPFLSAYSRLLIKTCHKRGAFAMGGMAAFIPSKDAERNNQVLTKVKADKALEANNG HDGTWIAHPGLADTAMAVFNDVLGENKNQLFVTREEDAPITAEQLLAPCEGERTEEGMRA NIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGKPVTKPLFR QMLAEEMLVIQDELGEHRYSSGRFDDAARLMEQITTSDELIDFLTLPGYRLLA >gi|283548473|gb|GG730304.1| GENE 126 133195 - 134124 969 309 aa, chain - ## HITS:1 COG:STM4182 KEGG:ns NR:ns ## COG: STM4182 COG1897 # Protein_GI_number: 16767432 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Salmonella typhimurium LT2 # 1 309 1 309 309 619 96.0 1e-177 MPIRVQDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLMPKKIETENQFLRLLSN SPLQVDVQLLRIDARESRNTPAEHLNNFYCNFEDICDQNFDGLIVTGAPLGLVEFNDVAY WPQIKQVLEWAKDHVTSTLFVCWAVQAALNILYGIPKQTRTDKLSGVYEHHILHPHALLT RGFDDAFLAPHSRYADFPAALIRDYTDLEIFAETEEGDAYLFASKDKRIAFVTGHPEYDA HTLGSEYFRDVEAGLTPEVPYNYFPKDDPQNKPRATWRSHGNLLFTNWLNYYVYQITPYD LRHMNPTLD >gi|283548473|gb|GG730304.1| GENE 127 134282 - 134719 404 145 aa, chain + ## HITS:1 COG:ECs4930 KEGG:ns NR:ns ## COG: ECs4930 COG0454 # Protein_GI_number: 15834184 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Escherichia coli O157:H7 # 1 142 1 142 147 238 76.0 2e-63 MTLTIRRSRQDEGDKLVSIWCRSVDATHHFLSADYRIELEELVRSFLPEAPLWVVVTEQD EPVAFMLLTDQHIDALFVDPDARGSGVGKLLIKHALSMSSTLTTDVNEQNEQAVGFYKKM GFNVTGRKEVDDLGRPYPLLNLMRG >gi|283548473|gb|GG730304.1| GENE 128 137718 - 137909 61 63 aa, chain + ## HITS:1 COG:no KEGG:COXBURSA331_A0274 NR:ns ## KEGG: COXBURSA331_A0274 # Name: not_defined # Def: hypothetical protein # Organism: C.burnetii_RSA331 # Pathway: not_defined # 1 63 1 63 63 100 82.0 1e-20 MIQPQVPLRLPCYDFTPVMNHKVVSALPKVKLPTSFATHSHGVTGGVYKARERIHRGILI HDY Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:54:42 2011 Seq name: gi|283548472|gb|GG730305.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld6, whole genome shotgun sequence Length of sequence - 38303 bp Number of predicted genes - 36, with homology - 34 Number of transcription units - 15, operones - 10 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 10 - 138 98.0 # EU285519 [D:5957..6097] # 5S ribosomal RNA # Edwardsiella ictaluri 93-146 # Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella. + Prom 157 - 216 4.9 1 1 Op 1 6/0.200 + CDS 393 - 1421 718 ## COG0812 UDP-N-acetylmuramate dehydrogenase 2 1 Op 2 . + CDS 1418 - 2380 835 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase + Term 2381 - 2425 7.2 - Term 2374 - 2404 3.0 3 2 Tu 1 . - CDS 2413 - 3369 638 ## COG1072 Panthothenate kinase - Prom 3488 - 3547 3.7 4 3 Tu 1 . + CDS 3484 - 3711 62 ## + Term 3869 - 3935 30.0 + TRNA 3755 - 3830 91.8 # Thr TGT 0 0 + TRNA 3839 - 3923 67.6 # Tyr GTA 0 0 + TRNA 4038 - 4112 64.8 # Gly TCC 0 0 + TRNA 4118 - 4193 88.7 # Thr GGT 0 0 + Prom 4141 - 4200 56.3 5 4 Op 1 . + CDS 4312 - 5043 947 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Prom 5069 - 5128 80.4 6 4 Op 2 . + CDS 5148 - 5936 1083 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 7 5 Tu 1 . - CDS 6027 - 6197 89 ## + Prom 5940 - 5999 80.3 8 6 Op 1 14/0.000 + CDS 6039 - 6422 583 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 6458 - 6487 2.1 + Prom 6479 - 6538 3.6 9 6 Op 2 46/0.000 + CDS 6653 - 7036 434 ## COG0690 Preprotein translocase subunit SecE 10 6 Op 3 45/0.000 + CDS 7038 - 7583 693 ## COG0250 Transcription antiterminator + Term 7618 - 7668 11.4 + Prom 7591 - 7650 6.0 11 7 Op 1 55/0.000 + CDS 7739 - 8167 703 ## PROTEIN SUPPORTED gi|228577459|ref|YP_002845810.1| 50S ribosomal protein L11 12 7 Op 2 43/0.000 + CDS 8171 - 8878 1144 ## PROTEIN SUPPORTED gi|170770139|ref|ZP_02904592.1| ribosomal protein L1 + Prom 9144 - 9203 1.9 13 7 Op 3 47/0.000 + CDS 9296 - 9793 793 ## PROTEIN SUPPORTED gi|146309862|ref|YP_001174936.1| 50S ribosomal protein L10 14 7 Op 4 28/0.000 + CDS 9860 - 10225 562 ## PROTEIN SUPPORTED gi|16762301|ref|NP_457918.1| 50S ribosomal protein L7/L12 + Term 10236 - 10284 6.3 + Prom 10333 - 10392 2.4 15 7 Op 5 58/0.000 + CDS 10546 - 14574 4086 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 + Term 14594 - 14633 9.2 16 7 Op 6 . + CDS 14651 - 18874 4716 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 18900 - 18939 8.4 - Term 18892 - 18923 4.1 17 8 Op 1 8/0.000 - CDS 19095 - 19412 240 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 18 8 Op 2 . - CDS 19417 - 19722 390 ## COG1440 Phosphotransferase system cellobiose-specific component IIB - Prom 19945 - 20004 4.2 19 9 Op 1 5/0.400 - CDS 20533 - 21666 1081 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 20 9 Op 2 16/0.000 - CDS 21663 - 22433 904 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 21 9 Op 3 5/0.400 - CDS 22435 - 22635 203 ## COG2104 Sulfur transfer protein involved in thiamine biosynthesis 22 9 Op 4 3/0.600 - CDS 22616 - 23374 862 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 23 9 Op 5 8/0.000 - CDS 23367 - 24002 850 ## COG0352 Thiamine monophosphate synthase 24 9 Op 6 4/0.600 - CDS 24002 - 25900 2237 ## COG0422 Thiamine biosynthesis protein ThiC - Term 26160 - 26205 -0.3 25 10 Tu 1 . - CDS 26259 - 26738 597 ## COG3160 Regulator of sigma D - Prom 26789 - 26848 2.8 + Prom 26723 - 26782 4.0 26 11 Op 1 5/0.400 + CDS 26838 - 27611 671 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 27 11 Op 2 4/0.600 + CDS 27661 - 28725 1237 ## COG0407 Uroporphyrinogen-III decarboxylase 28 11 Op 3 4/0.600 + CDS 28735 - 29415 682 ## COG1515 Deoxyinosine 3'endonuclease (endonuclease V) 29 11 Op 4 6/0.200 + CDS 29449 - 30039 668 ## COG3068 Uncharacterized protein conserved in bacteria + Term 30150 - 30184 1.3 + Prom 30062 - 30121 1.5 30 12 Op 1 . + CDS 30226 - 30498 447 ## COG0776 Bacterial nucleoid DNA-binding protein 31 12 Op 2 . + CDS 30504 - 31202 512 ## t3460 hypothetical protein + Term 31218 - 31254 1.9 32 13 Tu 1 . - CDS 31291 - 31734 440 ## COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein + Prom 31828 - 31887 3.0 33 14 Op 1 13/0.000 + CDS 31997 - 33382 1379 ## COG0642 Signal transduction histidine kinase 34 14 Op 2 . + CDS 33388 - 34713 1628 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - Term 34623 - 34666 2.1 35 15 Op 1 17/0.000 - CDS 34710 - 35999 1706 ## COG0151 Phosphoribosylamine-glycine ligase 36 15 Op 2 . - CDS 36015 - 37604 1820 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) - Prom 37699 - 37758 2.5 Predicted protein(s) >gi|283548472|gb|GG730305.1| GENE 1 393 - 1421 718 342 aa, chain + ## HITS:1 COG:ECs4899 KEGG:ns NR:ns ## COG: ECs4899 COG0812 # Protein_GI_number: 15834153 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Escherichia coli O157:H7 # 1 342 1 342 342 599 82.0 1e-171 MNHSLKAWNTFGIDQQANELVCSENEQQLLNAWQSANASHHPVLILGEGSNVLFLDTFHG TVIVNRIKGIKITEHPEAWHLHVGAGENWHHLVQHTLLQGMPGLENLALIPGCVGSSPIQ NIGAYGVELQRVCEYVDCVELSTGKHLRVSAAECRFGYRDSIFKHEYQDRFAIVAVGLRL PKQWQPVLTYGDLTRLDPATVTPQQVFDAVCHMRTTKLPDPKVNGNAGSFFKNPVVTAHV AQELLAKFPTAPHYPQADGSVKLAAGWLIDQCQLKGQRIGGAAVHQQQALVLINAGHATS QDVVQLAHHVRQKVGEKFNVWLEPEVRFIGPQGEVNAVEIIA >gi|283548472|gb|GG730305.1| GENE 2 1418 - 2380 835 320 aa, chain + ## HITS:1 COG:ECs4900_2 KEGG:ns NR:ns ## COG: ECs4900_2 COG0340 # Protein_GI_number: 15834154 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Escherichia coli O157:H7 # 77 320 1 244 245 444 92.0 1e-125 MKDNTVPLTLISLLADGEFHSGEQLGETLGMSRAAINKHVQTLRDWGVDVFTVPGKGYSL PEPIQLLDSSLIHSQLDGGNITVLPVIDSTNQYLMDRIGQLESGDACVAEYQQAGRGRRG RKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRDLGADKVRVKWPNDLYLL DRKLAGILVELTGKTGDAAQIVIGAGINMSMRRVEENVVNQGWINLQEAGINIDRNTLAA RLIRELRAALVLFEHEGLAPYLSRWKKLDNFIDRPVKLIIGDKEIFGISRGIDAQGALLL EQNGVIKPWMGGEISLRSAE >gi|283548472|gb|GG730305.1| GENE 3 2413 - 3369 638 318 aa, chain - ## HITS:1 COG:STM4139 KEGG:ns NR:ns ## COG: STM4139 COG1072 # Protein_GI_number: 16767398 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate kinase # Organism: Salmonella typhimurium LT2 # 3 318 1 316 316 613 94.0 1e-175 MRMSIKEQALTSPYLQFDRNQWAALRDSVPMTLTEEEIARLKGINEDLSLEEVAEIYLPL SRLLNFYISSNLRRQAVLEQFLGTNGERIPYIISIAGSVAVGKSTTARVLQALLSRWPEH RKVELITTDGFLHPNQVLKDRGLMKKKGFPQSYDMHRLVKFVSDLKSGVPNVTAPVYSHL IYDVIPDGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEELLQT WYINRFLKFREGAFTNPDSYFHNYAKLSEDEAINTATSLWKEINWLNLKQNILPTRERAS LIMTKSANHAVEEVRLRK >gi|283548472|gb|GG730305.1| GENE 4 3484 - 3711 62 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRGNNKKKSSPEKQCDGYSRCIKRYFLSIAERMAEQKFPLEERAPLEICPMSRGNRLFIG RIAQNVSDRTFYAIF >gi|283548472|gb|GG730305.1| GENE 5 4312 - 5043 947 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 244 1 257 407 369 72 1e-101 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE GEAEWEAKIIELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVE >gi|283548472|gb|GG730305.1| GENE 6 5148 - 5936 1083 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 263 93 368 407 421 76 1e-117 ITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEM EVRELLSQYDFPGDDTPIVRGSALKALEGEAEWEAKIIELAGFLDSYIPEPERAIDKPFL LPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKDTAKSTCTGVEMFRKLLDEGRAG ENVGVLLRGIKREEIERGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFY FRTTDVTGTIELPEGVEMVMPGD >gi|283548472|gb|GG730305.1| GENE 7 6027 - 6197 89 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTAAFVFGQDVHFGFELGVRLDRARLSQYLTTFDFFTFDTTQQNTNVLTSTAFLAS >gi|283548472|gb|GG730305.1| GENE 8 6039 - 6422 583 127 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 126 281 406 407 229 85 2e-59 EGRAGENVGVLLRGIKREEIERGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGY RPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAG VVAKVMS >gi|283548472|gb|GG730305.1| GENE 9 6653 - 7036 434 127 aa, chain + ## HITS:1 COG:STM4147 KEGG:ns NR:ns ## COG: STM4147 COG0690 # Protein_GI_number: 16767401 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Salmonella typhimurium LT2 # 1 127 1 127 127 188 97.0 3e-48 MSANTEAQGSGRGLEAMKWVVVAVLLLVAIVGNYLYRDMMLPLRALAVVILIAAAGGVAL LTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVS FITGLRF >gi|283548472|gb|GG730305.1| GENE 10 7038 - 7583 693 181 aa, chain + ## HITS:1 COG:STM4148 KEGG:ns NR:ns ## COG: STM4148 COG0250 # Protein_GI_number: 16767402 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Salmonella typhimurium LT2 # 1 181 1 181 181 337 97.0 8e-93 MSEAPKKRWYVVQAFSGFEGRVATSLREYIKLQNMEELFGEVMVPTEEVVEIRGGQRRKS ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD KPRPKTMFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK A >gi|283548472|gb|GG730305.1| GENE 11 7739 - 8167 703 142 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228577459|ref|YP_002845810.1| 50S ribosomal protein L11 [Citrobacter sp. 30_2] # 1 142 1 142 142 275 99 3e-73 MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSMEKGLPIPVVIT VYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGA DIEAMTRSIEGTARSMGLVVED >gi|283548472|gb|GG730305.1| GENE 12 8171 - 8878 1144 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|170770139|ref|ZP_02904592.1| ribosomal protein L1 [Escherichia albertii TW07627] # 1 234 1 234 234 445 99 1e-124 MAKLTKRMRVIRDKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVR GATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDA MRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDF DADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASANV >gi|283548472|gb|GG730305.1| GENE 13 9296 - 9793 793 165 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|146309862|ref|YP_001174936.1| 50S ribosomal protein L10 [Enterobacter sp. 638] # 1 165 1 165 165 310 99 1e-83 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLL RRVVEGTQFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPA SQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA >gi|283548472|gb|GG730305.1| GENE 14 9860 - 10225 562 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16762301|ref|NP_457918.1| 50S ribosomal protein L7/L12 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] # 1 121 1 121 121 221 100 7e-57 MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILK AAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV K >gi|283548472|gb|GG730305.1| GENE 15 10546 - 14574 4086 1342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 2 1342 6 1390 1392 1578 58 0.0 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIYAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK LREFIQRAYDLGSDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE >gi|283548472|gb|GG730305.1| GENE 16 14651 - 18874 4716 1407 aa, chain + ## HITS:1 COG:STM4154 KEGG:ns NR:ns ## COG: STM4154 COG0086 # Protein_GI_number: 16767408 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Salmonella typhimurium LT2 # 1 1407 1 1407 1407 2749 98.0 0 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG LASLHARVKVRITEYEKDENGEFVAHTSLKDTTIGRAILWMIVPKGLPFSIVNQALGKKA ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFSRDLLGITKASLATESFI SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA APQVTAEDASASLAELLNAGLGGSDND >gi|283548472|gb|GG730305.1| GENE 17 19095 - 19412 240 105 aa, chain - ## HITS:1 COG:YPO2680 KEGG:ns NR:ns ## COG: YPO2680 COG1447 # Protein_GI_number: 16122885 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Yersinia pestis # 2 101 15 114 115 88 49.0 3e-18 MEELETIIMELLVNAGAARSQALTALQLARKGDFAGAEQAMTESREYVKQAHKIQTQLIG IDEGTGKLPVNLITVHSQDHLMNAMVIQDLAGDMIELYRRLPSVN >gi|283548472|gb|GG730305.1| GENE 18 19417 - 19722 390 101 aa, chain - ## HITS:1 COG:VC1281 KEGG:ns NR:ns ## COG: VC1281 COG1440 # Protein_GI_number: 15641294 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIB # Organism: Vibrio cholerae # 1 100 1 100 101 97 53.0 5e-21 MKNIVLCCAAGMSTSMLVQRMKDAAQKKGVDVTIKAVPVAEFEENIATADIVLLGPQVKY EQAKLQALADPLGKKVAVIDMLDYGMMKGDAVLDKALKLLG >gi|283548472|gb|GG730305.1| GENE 19 20533 - 21666 1081 377 aa, chain - ## HITS:1 COG:STM4159 KEGG:ns NR:ns ## COG: STM4159 COG1060 # Protein_GI_number: 16767413 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Salmonella typhimurium LT2 # 1 375 1 375 377 717 90.0 0 MKTFSDRWRQLDWDDIRLRINGKTAADVERALNASQLSRDDLMALLSPAAADYLEPLAQR AQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKRKTLDEDEIQRECAAIREL GFEHLLLVTGEHQAKVGMDYFRRHLPSIRRQFASLQMEVQPLSEAEYAELKALGLDGVMV YQESYHEATYAHHHLKGKKQDFFWRLETPDRLGRAGIDKIGLGALIGLSDSWRVDCYMVA EHLLWLQQHYWQSRYSISFPRLRPCTGGVKPASIMDERQLVQTICAFRLLAPEIELSLST RESPWFRDHAIPLAINNVSAFSKTQPGGYADNHPELEQFAPHDDRRPEAVAEALMARGLQ PVWKDWDSYLGRAAQVP >gi|283548472|gb|GG730305.1| GENE 20 21663 - 22433 904 256 aa, chain - ## HITS:1 COG:STM4160 KEGG:ns NR:ns ## COG: STM4160 COG2022 # Protein_GI_number: 16767414 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Salmonella typhimurium LT2 # 1 256 1 256 256 427 93.0 1e-119 MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKRVDLRKPNDAILAPLIE AGVTLLPNTSGAKTAEEAIFAAQLAREALGTHWLKLEIHPDARWLLPDPIETLKAAEALV KQGFVVLPYCSADPVLCKRLAEVGCSAVMPLGAPIGSNQGLETKAMLEIIIQQATVPVVV DAGIGVPSHATQALEMGADAVLVNTAIAVADNPVMMASAFRLAVEAGLLARQAGPGSKSS QANATSPLTGFLEAFA >gi|283548472|gb|GG730305.1| GENE 21 22435 - 22635 203 66 aa, chain - ## HITS:1 COG:STM4161 KEGG:ns NR:ns ## COG: STM4161 COG2104 # Protein_GI_number: 16767415 # Func_class: H Coenzyme transport and metabolism # Function: Sulfur transfer protein involved in thiamine biosynthesis # Organism: Salmonella typhimurium LT2 # 1 66 1 66 66 86 93.0 1e-17 MQIQFNDEPMQCAAGQTVSGLLIQLNQLKPGAALALNQQILPREQWEQQIVQEGDQILLF QVIAGG >gi|283548472|gb|GG730305.1| GENE 22 22616 - 23374 862 252 aa, chain - ## HITS:1 COG:STM4162 KEGG:ns NR:ns ## COG: STM4162 COG0476 # Protein_GI_number: 16767416 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Salmonella typhimurium LT2 # 1 252 1 252 252 449 87.0 1e-126 MNDRDFMRYSRQILLGDIAIEGQQKLLASHVLIVGLGGLGSPAALYLAGAGVGKLTLVDD DDIHLSNLQRQILFTTDDIARSKSQVAQQRLTRLNPDIELVSLQQRLKGEALRHAVARAD VVLDCTDNMATRQEINAACVTLNTPLITASAVGFGGQLMILTPPWEQGCYRCLWPDDVEP ERNCRTAGVLGPVVGVMGTLQALEAIKLLSGIETPSGQLRLFDGKTSQWRSLALRRASGC PVCGGQHANSIQ >gi|283548472|gb|GG730305.1| GENE 23 23367 - 24002 850 211 aa, chain - ## HITS:1 COG:STM4163 KEGG:ns NR:ns ## COG: STM4163 COG0352 # Protein_GI_number: 16767417 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Salmonella typhimurium LT2 # 1 211 1 211 211 381 95.0 1e-106 MYQPDFPTVPLRLGLYPVVDSVAWIERLLEAGVRTIQLRIKDKRDEEVEADVIAAIALGR RYNARLFINDYWRLAIKHRAYGVHLGQEDLETTDLQAIQAAGLRLGVSTHDDMEIDVALS ARPSYIALGHVFPTQTKQMPSAPQGLAQLASHIKRLADYPTVAIGGISLERAPAVLATGV GSIAVVSAITQAADWRAATAQLLDIAGVGDE >gi|283548472|gb|GG730305.1| GENE 24 24002 - 25900 2237 632 aa, chain - ## HITS:1 COG:STM4164 KEGG:ns NR:ns ## COG: STM4164 COG0422 # Protein_GI_number: 16767418 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Salmonella typhimurium LT2 # 3 632 2 631 631 1282 96.0 0 MSATTKPSRREQRAQAQRFIDTLEGTAFPNSQRIYITGSQPDIRIPMREIQLSPTLIGGS KDNPQFEENEAVPVYDTSGPYGDPDVAINVQQGLAKLRQPWIDARNDSEELDDRSSAYTK ERLADDGLDELRFTGLLTPKRAKAGKRVTQLHYARQGIVTPEMEFIAIRENMGRERIRSE VLRHQHPGMSFGARLPENITPEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNAN IGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQA LEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIM AKWCLSHHKENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFSELHTLGEL TKIAWEYNVQVMIEGPGHVPMHMIQRNMTEELESCHEAPFYTLGPLTTDIAPGYDHFTSG IGAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDNA MSKARFEFRWEDQFNLALDPFTARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRD YAAAQTIEVGMADMSENFRAKGGEIYLKREEA >gi|283548472|gb|GG730305.1| GENE 25 26259 - 26738 597 159 aa, chain - ## HITS:1 COG:STM4165 KEGG:ns NR:ns ## COG: STM4165 COG3160 # Protein_GI_number: 16767419 # Func_class: K Transcription # Function: Regulator of sigma D # Organism: Salmonella typhimurium LT2 # 1 159 1 162 162 232 73.0 2e-61 MLNQLEHLKERVHGHHKLVDRWLNIRKHLLVAYYDLVGLKPGKESFMRLNEKALDNFCQR LVDYLSAGHFSIYERIIHKMEGESPLLNASKIWPQLDANTQLIMDYYDSTLENAIDEDNV HQLQQALSDIGEALEARFRLEDQLIMLAFKTLSEFKRPA >gi|283548472|gb|GG730305.1| GENE 26 26838 - 27611 671 257 aa, chain + ## HITS:1 COG:yjaD KEGG:ns NR:ns ## COG: yjaD COG2816 # Protein_GI_number: 16131826 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Escherichia coli K12 # 1 257 1 257 257 497 92.0 1e-141 MDRIIEKWDRGWWIVSHEQKLWLPAGELPYGEAVNFDLAGQRALQIGEWEGDTVWLVQQQ RRHDMGSVRQVIDQDVGLFQLAGRGVQLAEFYRSHKFCGYCGHPMHPSKTEWAMLCSHCR ERYYPQIAPCIIVAIRRDDSILLAQHVRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG IKVKNLRYVTSQPWPFPQSLMTAYMAEYASGEIVIDPKELLEANWYRYDDLPLLPPPGTV ARRLIEDTVAMCRAEYE >gi|283548472|gb|GG730305.1| GENE 27 27661 - 28725 1237 354 aa, chain + ## HITS:1 COG:hemE KEGG:ns NR:ns ## COG: hemE COG0407 # Protein_GI_number: 16131827 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Escherichia coli K12 # 1 354 1 354 354 706 95.0 0 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAEAGDFMALCKNAELACEVT LQPLRRYKLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTSPIASKADVDKLPIPDPEDG LGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPKALHL LLDKLAQSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENEG RRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGHKVALQGNMDPSMLYAP PARIEDEVATILAGFGQGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR >gi|283548472|gb|GG730305.1| GENE 28 28735 - 29415 682 226 aa, chain + ## HITS:1 COG:nfi KEGG:ns NR:ns ## COG: nfi COG1515 # Protein_GI_number: 16131828 # Func_class: L Replication, recombination and repair # Function: Deoxyinosine 3'endonuclease (endonuclease V) # Organism: Escherichia coli K12 # 1 223 3 225 225 407 89.0 1e-114 MDLASLRAQQLELASSVIREDRLDIDPPDLIGGADVGFEQGGEVTRAAMVLMKYPTLELV EYKVARIATTMPYIPGFLSFRETPALMSAWQQLSQKPDLLFVDGHGISHPRRLGVASHFG LLVDVPTIGVAKKRLCGKFEPLSAEPGALAPLLDKGEQLAWVWRSKARCNPLFISTGHRV SMDNALAWVQRCMNGYRLPEPTRWADAVASERPSFTRLAAKPPYIG >gi|283548472|gb|GG730305.1| GENE 29 29449 - 30039 668 196 aa, chain + ## HITS:1 COG:STM4169 KEGG:ns NR:ns ## COG: STM4169 COG3068 # Protein_GI_number: 16767423 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 1 196 1 196 196 375 96.0 1e-104 MLQNPIHLRLEKLESWQHVTFMACLCERMYPNYAMFCKQTEFGDGQIYRRILDLVWEALT VKDAKINFDSQLEKFEEAIPSADDYDLYGVYPAIDACVALSELMHSRLSGETLEHAIEVS KASITTVAMLEMTQAGREMTDEELKENPAVEQEWDIQWEIFRLLADCEERDIELIKGLRA DLREAGESNIGINFQQ >gi|283548472|gb|GG730305.1| GENE 30 30226 - 30498 447 90 aa, chain + ## HITS:1 COG:STM4170 KEGG:ns NR:ns ## COG: STM4170 COG0776 # Protein_GI_number: 16767424 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Salmonella typhimurium LT2 # 1 90 1 90 90 137 100.0 4e-33 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG RNPQTGKEIKIAAANVPAFVSGKALKDAVK >gi|283548472|gb|GG730305.1| GENE 31 30504 - 31202 512 232 aa, chain + ## HITS:1 COG:no KEGG:t3460 NR:ns ## KEGG: t3460 # Name: yjaH # Def: hypothetical protein # Organism: S.typhi_Ty2 # Pathway: not_defined # 3 232 1 230 230 379 80.0 1e-104 MAVNSFIEGAVSPLLSVWRHSLWLSGVLLLSACGSHSELPPFTASGYVGDQGAVRIWRKD SSDDVHLLSVFSPWRKGDTTTSEYRWQGDALSLIELNVYSKPSEHVRIRFDDRGELSFMQ REVDGQKQQLSSDQIALYRYRAEQIRQTSDALRQGRVVLRQGRWHANNTVTTCEGETLKP DLESWAINHIERRQSHSSVEVSVAWLEAPEGSQLLLVANEDFCHWQPKEKTF >gi|283548472|gb|GG730305.1| GENE 32 31291 - 31734 440 147 aa, chain - ## HITS:1 COG:STM4172 KEGG:ns NR:ns ## COG: STM4172 COG3678 # Protein_GI_number: 16767426 # Func_class: U Intracellular trafficking, secretion, and vesicular transport; N Cell motility; T Signal transduction mechanisms; P Inorganic ion transport and metabolism # Function: P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein # Organism: Salmonella typhimurium LT2 # 1 125 1 127 151 152 74.0 3e-37 MKRNNKLALIALSLIALSSTPALAQNHWGYGGGMQQGGGIPMTTEQQATAQKIYDDYYSQ TSALRQQLVSKRYEYNALLTASSPDSEKINAVAKEMEALNQSLDEQRVKRDVAMAQAGIP RGAGMGYGGCGGGGNYHGGGHMGMGHW >gi|283548472|gb|GG730305.1| GENE 33 31997 - 33382 1379 461 aa, chain + ## HITS:1 COG:STM4173 KEGG:ns NR:ns ## COG: STM4173 COG0642 # Protein_GI_number: 16767427 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Salmonella typhimurium LT2 # 1 461 4 465 465 685 79.0 0 MRLYKDTVAKWLSRLLLAAILTLVGWFSIMTIRDYGRESDAARQTLLEKGSVLIRALESG TRVGMGMRMHHAQQQTLLEEMAVQPGVLWFAVVDEHGVIITHSNSAMVGKTLYSPDVLRQ LSPGEQERWRNIDIAAGEGEKMPALEIYRQFQPMYGPGRHSMARCNSNDGQLITPTQTIF IAFDASDLAATRAREWRNTLIVLSALAAVLLATVLTFFWYQRYQRSYKELQDAMKRKEKL MALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRVVSELL ELVKPAHLTLQQVDLNEAITHSLHLVSQDAASREIQLRFAANSTLPTIQADPDRLTQVLL NLYLNAIHAIGRQGTITVEARESSAERVKIVVIDSGKGIAAEQLETIFTPYFTTKADGTG LGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLPTKAKQQD >gi|283548472|gb|GG730305.1| GENE 34 33388 - 34713 1628 441 aa, chain + ## HITS:1 COG:STM4174 KEGG:ns NR:ns ## COG: STM4174 COG2204 # Protein_GI_number: 16767428 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Salmonella typhimurium LT2 # 1 441 1 441 441 788 93.0 0 MIRGKINILVVDDDISHCTILQALLRGWGYEVALAYSGRAALEQVHERVFDLVLCDVRMA EMDGIATLKEIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKA LAHTRDTGAELPSASAAQFGMIGRSPAMQQLLNEIAMVAPSDATVLIHGDSGTGKELVAR ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD EIGDISPLMQVRLLRAIQEQEVQRVGSNQTIGVDVRLIAATHRDLAEEVSAGRFRQDLYY RLNVVTIEMPALCQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYNWPGNIRE LENAIERAVVLLTGEYISERELPMAIAATPIKAEFSGEIQPLVDVEKEVILAALEKTGGN KTEAARQLGITRKTLLAKISR >gi|283548472|gb|GG730305.1| GENE 35 34710 - 35999 1706 429 aa, chain - ## HITS:1 COG:STM4175 KEGG:ns NR:ns ## COG: STM4175 COG0151 # Protein_GI_number: 16767429 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Salmonella typhimurium LT2 # 1 428 1 428 429 827 97.0 0 MKVLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQNVAISVTDIPALLSFA QNEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLEGSKAFTKDFLARHHIPTA EYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDA GHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGNGDTGPNTGGMGAYSPAPVVT DEVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQGNPKVIEFNCRFGDPETQPIM LRMKSDLVDLCLAACDGKLDEKTSEWDERASLGVVIAAGGYPGSYNTGDEIHGLPLESST DAKVFHAGTKLADDDRVLTSGGRVLCATALGHTVAEAQQRAYALMTDIRWDGSFSRNDIG WRAIEREQR >gi|283548472|gb|GG730305.1| GENE 36 36015 - 37604 1820 529 aa, chain - ## HITS:1 COG:STM4176 KEGG:ns NR:ns ## COG: STM4176 COG0138 # Protein_GI_number: 16767430 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Salmonella typhimurium LT2 # 1 529 1 529 529 1016 97.0 0 MQQRRPVRRALLSVSDKAGIIEFAQALSARGVELLSTGGTARLLAEKGLPVTEVSDYTGF PEMMDGRVKTLHPKVHGGILGRRGQDDGIMEQHGIAPIDMVVVNLYPFAQTVARVGCSLE DAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYEAIIKEMDANDGSLTLDTRFDLAIKAF EHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNLNFIKKQDMRYGENSHQQAAFYI EENVKEASVATAQQVQGKALSYNNIADTDAALECVKEFNEPACVIVKHANPCGVAVSTSI LDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAIISRQFVEVIIAPSATEDALKITAAKQ NVRVLTCGQWAERVPGLDFKRVNGGLLVQDRDLGMVTEGELRVVSKRQPTEQELRDALFC WKVAKFVKSNAIVYAKENMTIGIGAGQMSRVYSAKIAGIKAADEGLEVKGSAMASDAFFP FRDGIDAAAAVGVSCVIQPGGSIRDDEVIAAADEHGIAMIFTDMRHFRH Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:55:01 2011 Seq name: gi|283548471|gb|GG730306.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld7, whole genome shotgun sequence Length of sequence - 15614 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 12, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 873 - 932 5.5 1 1 Tu 1 . + CDS 1141 - 1302 66 ## gi|283836748|ref|ZP_06356489.1| hypothetical protein CIT292_11274 + Term 1400 - 1444 -0.7 + Prom 1355 - 1414 3.9 2 2 Tu 1 . + CDS 1532 - 2188 223 ## gi|283836749|ref|ZP_06356490.1| IpaB/EvcA family protein + Term 2270 - 2320 6.2 3 3 Tu 1 . - CDS 2331 - 2735 82 ## SNSL254_A2788 leucine-rich repeat protein - Prom 2806 - 2865 3.8 + Prom 3560 - 3619 3.9 4 4 Tu 1 . + CDS 3666 - 4076 184 ## gi|283836751|ref|ZP_06356492.1| conserved hypothetical protein 5 5 Tu 1 . - CDS 4512 - 5102 60 ## YE105_C3580 hypothetical protein - Prom 5169 - 5228 5.2 6 6 Op 1 7/0.000 - CDS 5317 - 5712 185 ## COG1662 Transposase and inactivated derivatives, IS1 family 7 6 Op 2 . - CDS 5739 - 6011 153 ## COG3677 Transposase and inactivated derivatives - Prom 6215 - 6274 6.4 + Prom 6466 - 6525 3.0 8 7 Op 1 . + CDS 6754 - 7323 519 ## ESA_00987 hypothetical protein 9 7 Op 2 . + CDS 7320 - 8492 447 ## ESA_00987 hypothetical protein + Term 8518 - 8565 13.2 - Term 8558 - 8622 1.5 10 8 Tu 1 . - CDS 8728 - 9279 302 ## COG3335 Transposase and inactivated derivatives 11 9 Tu 1 . + CDS 10131 - 10442 182 ## COG1943 Transposase and inactivated derivatives + Term 10524 - 10554 5.0 - Term 10512 - 10542 5.0 12 10 Op 1 . - CDS 10555 - 12702 1009 ## YE0694 putative adhesin 13 10 Op 2 . - CDS 12845 - 13249 172 ## ROD_29841 T3SS chaperone CesT - Prom 13297 - 13356 5.1 14 11 Tu 1 . - CDS 13520 - 14164 108 ## Kvar_2593 Crp/Fnr family transcriptional regulator - Prom 14199 - 14258 1.8 15 12 Tu 1 . - CDS 14403 - 14789 100 ## gi|283836762|ref|ZP_06356503.1| conserved hypothetical protein - Prom 14990 - 15049 6.5 Predicted protein(s) >gi|283548471|gb|GG730306.1| GENE 1 1141 - 1302 66 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836748|ref|ZP_06356489.1| ## NR: gi|283836748|ref|ZP_06356489.1| hypothetical protein CIT292_11274 [Citrobacter youngae ATCC 29220] hypothetical protein CIT292_11274 [Citrobacter youngae ATCC 29220] # 1 53 206 258 258 92 100.0 7e-18 MASEVKHMVDNFNQSRNTSLGQSGQSVSTYNNSAWPTRVLQAITKFFKNSMQI >gi|283548471|gb|GG730306.1| GENE 2 1532 - 2188 223 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836749|ref|ZP_06356490.1| ## NR: gi|283836749|ref|ZP_06356490.1| IpaB/EvcA family protein [Citrobacter youngae ATCC 29220] IpaB/EvcA family protein [Citrobacter youngae ATCC 29220] # 1 218 16 233 233 425 100.0 1e-117 MITYGYNQFSTHGKSNTSQDYSAKNISNNMSLEIRAYAPKPHFANLFREKELIFQHEGKI RIFDIGRISRETKTLIEKQGGMLAWRGQEATTFVSALINKQIDDVCTQFGKGIPSHRKAE LFKHLEGIAKREHITDKLDVNGANSSVKHCVMSNRYLIKQLRKLERNFPDDKNKINTKII DKCAREIACDMLNISDKNLRSIENQAREMAHKILTAGG >gi|283548471|gb|GG730306.1| GENE 3 2331 - 2735 82 134 aa, chain - ## HITS:1 COG:no KEGG:SNSL254_A2788 NR:ns ## KEGG: SNSL254_A2788 # Name: not_defined # Def: leucine-rich repeat protein # Organism: S.enterica_Newport # Pathway: not_defined # 2 132 359 489 489 172 56.0 4e-42 MLNDKDRGIAFKEFMEKHERYNVTDDKFSKLDDTQRWTKTSKAGLEFQTKVRERKVIFCA DELIDAIPEIASKGGAYGDAITAHELRWLYRHRNEDYIKSNVLFSLKGKIVSHDTIFNLK GWEIYQPKNKNKHA >gi|283548471|gb|GG730306.1| GENE 4 3666 - 4076 184 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|283836751|ref|ZP_06356492.1| ## NR: gi|283836751|ref|ZP_06356492.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 136 1 136 136 248 100.0 1e-64 MPNLPSSVLNSFYAYDFPDKVEAFKSFDAMLEELACINILHNDFHADNILYDKVANTFYP IDMADYTEDFNKLTADEQKEWSSCLDFRINDCRELIKNRRNEEKEARDLAIKEARELRAL RRQQTEGLKLASSTQS >gi|283548471|gb|GG730306.1| GENE 5 4512 - 5102 60 196 aa, chain - ## HITS:1 COG:no KEGG:YE105_C3580 NR:ns ## KEGG: YE105_C3580 # Name: not_defined # Def: hypothetical protein # Organism: Y.enterocolitica_palearctica # Pathway: not_defined # 27 162 748 890 916 120 48.0 4e-26 MRTLQISSPSPSCNNASDVDDLHSKVISLGKFLGGGWDGKVYEDKNHPGFVLKFSAAATA IDLKTEVELFNCYYGENSAVLLNEKTIRMKKISGIPLDEIEGKIFPANAIEKFNEMICKL GDNAIMHQDFHPGNILYDANKNTFNPIDFSNKYGIFFSESEDHPCFTSSADRKSAINKID ENNYIDYITFINDHIL >gi|283548471|gb|GG730306.1| GENE 6 5317 - 5712 185 131 aa, chain - ## HITS:1 COG:ECs1301 KEGG:ns NR:ns ## COG: ECs1301 COG1662 # Protein_GI_number: 15830555 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS1 family # Organism: Escherichia coli O157:H7 # 1 119 1 119 145 181 71.0 3e-46 MALICELDEQWSFVGSKARHHWLWYAYNTKTGGILAYTFGPRTDETCRELLALLTPFNIG IITSDDWGYYVRGVPKEKHLTGKLFTQRIERNNLTLRTRIKRLARKTICFSRSIELHEKV IGAFIEKYMFY >gi|283548471|gb|GG730306.1| GENE 7 5739 - 6011 153 90 aa, chain - ## HITS:1 COG:YPO0981 KEGG:ns NR:ns ## COG: YPO0981 COG3677 # Protein_GI_number: 16121285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 86 1 86 87 128 74.0 3e-30 MASVNVHCPRCQSPQVYRHGQNPKGRDRFRYRDCHRVFLLTYTYEARKPGVKEQITEMAF NGAGVRDTVRTLKIGINTVIRTLKNSRQSE >gi|283548471|gb|GG730306.1| GENE 8 6754 - 7323 519 189 aa, chain + ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 181 161 341 1027 308 75.0 7e-83 MFGGNVFLDDDFTGKNRRVGFGAEAWTDYLKLAANTYVGTTEWHSSRDFNDYNEKPADAY DLRAEGYLPAYPQLGAKVMYEQYFGEKVALFDKDHLQNNPSAVTVGLNYTPIPLITAAVD YKRGQESLDDTQFSLNFRYAIGQSWESQITSDQVAIRRSLAGSRYDLVDRNNELSCSTRK KRAGFYLQI >gi|283548471|gb|GG730306.1| GENE 9 7320 - 8492 447 390 aa, chain + ## HITS:1 COG:no KEGG:ESA_00987 NR:ns ## KEGG: ESA_00987 # Name: not_defined # Def: hypothetical protein # Organism: E.sakazakii # Pathway: not_defined # 1 326 350 676 1027 240 55.0 7e-62 MTLASIKDNSPADGITVKTATVHTVTSDGKPVSGAAITWSVTGSAKLSTASGVTDSSGNA SVNITNTAAEQITVTATSGSLSRPTPSAFVQYAASLNLQLTKNNSRADGSDQNAAQVTVK DAAGNTMPGIELTWQTGTGATVVSSDNFTDGNGHASIHFSSTTAGAVRLSATALGKTEST SASFMAEVVQNVAVTMTTNDSLANGTTANVAQTVVTNASGHPMSGVSVTWSLGTGSATAT TPLTVTTNASGIATLNLTDTAVEGGTVTASAGGKSGNTTAMFSAIKAAFVTISTSGRGNA ADPGITTAVVTDSQGNPLAGSRVSWSQTHSAYITCNAGDQVTDANGKSVQTCHAVSGNAS GEIMKITVNPQDSVNPGTPLTAQLTRNFLL >gi|283548471|gb|GG730306.1| GENE 10 8728 - 9279 302 183 aa, chain - ## HITS:1 COG:PSLT042 KEGG:ns NR:ns ## COG: PSLT042 COG3335 # Protein_GI_number: 17233422 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 4 183 164 343 345 264 68.0 8e-71 MAAIHHALDECSAKHPVFYEDEVDIHLTPKIGADWQLRGQQKRVVTPGLNEKYYLAGALH SGTGKVSYVGGNSKSSVLFISLLKHLKGTYRRAKTITLIVDNYIIHKSRETQRWLKANPK FRVIYQPVYSPWVNHVERLWLALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGGKHGL AKV >gi|283548471|gb|GG730306.1| GENE 11 10131 - 10442 182 103 aa, chain + ## HITS:1 COG:YPO1521 KEGG:ns NR:ns ## COG: YPO1521 COG1943 # Protein_GI_number: 16121794 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Yersinia pestis # 1 103 50 152 152 210 97.0 5e-55 MNILEAECCVDHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRG YYVDTVGKNTAKIQEYIKHQLEEDKMGEQLSISYPGSPFTGRK >gi|283548471|gb|GG730306.1| GENE 12 10555 - 12702 1009 715 aa, chain - ## HITS:1 COG:no KEGG:YE0694 NR:ns ## KEGG: YE0694 # Name: not_defined # Def: putative adhesin # Organism: Y.enterocolitica # Pathway: Bacterial invasion of epithelial cells [PATH:yen05100] # 62 476 143 562 2484 301 41.0 1e-79 MLKTKLLMLSLMCISPLLYAQETPTKDSLPVLDSSTTQTGETISDSTLYTKSAASLLKSG PAFDQYAAGKISQLTSQAIEGWLKQYGNARITLNAQSDNSTALAGSSADLLFGLHNQDSR LDYIQFDTHYQDTEDMIFNVGLGQRYFMTNKTMLGYNVFYDRNINSGVSRSGVGFELWRD YFKFSGNGYFALSDWQNSEQLEDYDEKAADGYDMQIEAYLPTYAQLGGHLKYEQYFGDNV ALFDTNHLQTDPSAITVGMSYTPIPLITFALDYKKGNDSLDDTSISAAINYAIGVPWSQQ ISSDYVQTRRSLVGSRFDFVSRNNDIVMQYRKQDVIKLILPTQLNGQATQQLPLVATVEA KNGLDHIQWDSSSSLLQAGGTVIPGSDATHFTVSLPATAGQYVLNGTAYDNHHNASNSAQ TRFIVAGGGGNAQITFQPLTTAWTDTAENIAVEVKDASGQPAPGTSVTFSTTSCTGNDCT LSDTTVTAIDTQGKAIAKTTLLKPAAGTTVVRACVTGTSACSDQPIKFYQPPFMTGELKL LGKLSPDTSLPTTWISNMQFSTAFATRGGDGNYSWKSSDESAATVDESGLVTIKNKLADF SISVTSLGRTSVAAKSLNVTKATAMLHIDTNEANYADTDQACTAAGRKIPALQDFTDITT LWGDMSKYPTYSALRDYVWAYGTETDVAPGYRMSDGVSYPNLSKETNGYQGCLEK >gi|283548471|gb|GG730306.1| GENE 13 12845 - 13249 172 134 aa, chain - ## HITS:1 COG:no KEGG:ROD_29841 NR:ns ## KEGG: ROD_29841 # Name: cesT # Def: T3SS chaperone CesT # Organism: C.rodentium # Pathway: not_defined # 1 128 1 127 156 70 32.0 2e-11 MSQRANILLNEFGVTQGIPDMKFNEEGLCSFLINDLYDITLIVDQDEKIFLYGVLVNAPI EEALQSALVLISANTYLFGSAEISCCYESQSQAFILMKSIDLNTLTASTIEDCIDKVIDA IKSIRLTLEEMKHQ >gi|283548471|gb|GG730306.1| GENE 14 13520 - 14164 108 214 aa, chain - ## HITS:1 COG:no KEGG:Kvar_2593 NR:ns ## KEGG: Kvar_2593 # Name: not_defined # Def: Crp/Fnr family transcriptional regulator # Organism: K.variicola # Pathway: not_defined # 14 214 15 209 209 88 31.0 2e-16 MNLHDIEKPIDSIEKVMAHFPVTQPFLMESGKILPLKQKNDTIPKKIFFLLDGAFIGSTG EGDKKCNLGIATSPAIIGLGQLGGTNAFIEFESISPCLIDTINLDDFCNIIDNNNLWLDI CKIMIPALGTLSIRASTSGLQSAYEIIRSYLIYMDNEKSFSIKERYTVVKYMQTFSRLSR SMILKILAELKVGGFIEMENGKLIRINRNLPEKF >gi|283548471|gb|GG730306.1| GENE 15 14403 - 14789 100 128 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|283836762|ref|ZP_06356503.1| ## NR: gi|283836762|ref|ZP_06356503.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220] conserved hypothetical protein [Citrobacter youngae ATCC 29220] # 1 128 1 128 128 199 100.0 5e-50 MKKKPSSLECKKLEIYSSEIIALQYKVDEISRILKEIHQVDDDEEEQRSSSTSTAPTWHI SPKSGTGIANVLNITYAECTQLSTDDLLKRLTHEKEQSTSIAVKKLQAVATISKSLLQLA HIRNKIKP Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:56:07 2011 Seq name: gi|283548470|gb|GG730307.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld8, whole genome shotgun sequence Length of sequence - 7827 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 8, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 616 - 975 111 ## G2583_0294 Superinfection exclusion protein B + Term 1211 - 1240 -0.2 2 2 Tu 1 . - CDS 1333 - 1989 373 ## Riean_1468 site-specific DNA-methyltransferase (adenine-specific) (EC:2.1.1.72) - Prom 2237 - 2296 80.3 - Term 2192 - 2258 31.6 3 3 Tu 1 . - CDS 2298 - 2480 177 ## BWG_3701 lambda genome from map unit 74 backward to map unit 67 - Term 3100 - 3149 2.3 4 4 Tu 1 . - CDS 3395 - 4234 353 ## BWG_3702 protein RexA 5 5 Tu 1 . - CDS 4347 - 5060 319 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Prom 4974 - 5033 4.8 6 6 Op 1 . + CDS 5161 - 5592 125 ## ECUMN_1399 replication protein from bacteriophage origin 7 6 Op 2 . + CDS 5665 - 6855 549 ## COG0477 Permeases of the major facilitator superfamily 8 7 Tu 1 . - CDS 6911 - 7039 78 ## ECSE_P1-0012 hypothetical protein 9 8 Op 1 . + CDS 7262 - 7390 67 ## gi|239629191|ref|ZP_04672222.1| molybdenum cofactor biosynthesis protein C 10 8 Op 2 . + CDS 7422 - 7685 129 ## EcSMS35_B0004 regulatory protein Rop Predicted protein(s) >gi|283548470|gb|GG730307.1| GENE 1 616 - 975 111 119 aa, chain + ## HITS:1 COG:no KEGG:G2583_0294 NR:ns ## KEGG: G2583_0294 # Name: not_defined # Def: Superinfection exclusion protein B # Organism: E.coli_O55_H7 # Pathway: not_defined # 1 119 1 119 160 232 100.0 5e-60 MYMIVIWVGLLLLSPDNWPEYVNERIGIPHVWHVFVFALAFSLAINVHRLSAIASARYKR FKLRKRIKMQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVVTSKQFPYISELIELGVLN >gi|283548470|gb|GG730307.1| GENE 2 1333 - 1989 373 218 aa, chain - ## HITS:1 COG:no KEGG:Riean_1468 NR:ns ## KEGG: Riean_1468 # Name: not_defined # Def: site-specific DNA-methyltransferase (adenine-specific) (EC:2.1.1.72) # Organism: R.anatipestifer # Pathway: not_defined # 1 216 1 210 339 306 70.0 4e-82 MARNATNKLLHKAKKSKSDEFYTQYCDIENELQYYREHFSDKVVYCNCDDPRVSNFFKYF AVNFDNLGLKKLIASCYVENKEGFSSSEAAKNGFYYEYHKENGKKLVFDDISVSSFCGDG DFRSSESIDLLKKSDIVVTNPPFSLFREYLDQLIKYDKKFLIIANVNSTTYKEVFNLIKE NKIWLGVHLGRGVSGFIVPEHYELYGTEARIDSNGNTS >gi|283548470|gb|GG730307.1| GENE 3 2298 - 2480 177 60 aa, chain - ## HITS:1 COG:no KEGG:BWG_3701 NR:ns ## KEGG: BWG_3701 # Name: not_defined # Def: lambda genome from map unit 74 backward to map unit 67 # Organism: E.coli_BW2952 # Pathway: not_defined # 1 58 1 58 107 91 100.0 9e-18 MDAQTRRRERRAEKQAQWKAANPLLVGVSAKPVNRPILSLNRKPKSRVESALNPIDLTAS >gi|283548470|gb|GG730307.1| GENE 4 3395 - 4234 353 279 aa, chain - ## HITS:1 COG:no KEGG:BWG_3702 NR:ns ## KEGG: BWG_3702 # Name: not_defined # Def: protein RexA # Organism: E.coli_BW2952 # Pathway: not_defined # 1 279 1 279 279 539 99.0 1e-152 MKNGFYATYRSKNKGKDKRSINLSVFLNSLLADNHHLQVGSNYLYIHKIDGKTFLFTKTN DKSLVQKINRSKASVEDIKNSLADDESLGFPSFLFVEGDTIGFARTVFGPTTSDLTDFLI GKGMSLSSGERVQIEPLMRGTTKDDVMHMHFIGRTTVKIEAKLPVFGDILKVLGATDIEG ELFDSLDIVIKPKFKRDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLS APLNKVTNAEIAEEMAYCYARMKSDILECFKRQVGKVKD >gi|283548470|gb|GG730307.1| GENE 5 4347 - 5060 319 237 aa, chain - ## HITS:1 COG:ECs0274 KEGG:ns NR:ns ## COG: ECs0274 COG1974 # Protein_GI_number: 15829528 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Escherichia coli O157:H7 # 1 237 1 237 237 454 97.0 1e-128 MSTKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNA YNAALLTKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPKLR TFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDF CIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG >gi|283548470|gb|GG730307.1| GENE 6 5161 - 5592 125 143 aa, chain + ## HITS:1 COG:no KEGG:ECUMN_1399 NR:ns ## KEGG: ECUMN_1399 # Name: O # Def: replication protein from bacteriophage origin # Organism: E.coli_UMN026 # Pathway: not_defined # 19 141 41 163 299 235 97.0 4e-61 MEQRITLKDYAMRFGQTKTAKDLTKRQFKVLLAILRKTYGWNKPMDRITDSQLSEITKLP VKRCNEAKLELVRMNIIKQQGGMFGPNKNISEWCIPQNEGKSPKTRDKTSLKLGDCYPSK QGDTKDTITKEKRKDYSSENSHV >gi|283548470|gb|GG730307.1| GENE 7 5665 - 6855 549 396 aa, chain + ## HITS:1 COG:AGl1300 KEGG:ns NR:ns ## COG: AGl1300 COG0477 # Protein_GI_number: 15890776 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 4 371 2 369 394 307 47.0 2e-83 MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCA PVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRIVAGITGATGAVAGAYI ADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFL MQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDR FRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAIIAGMAADALGYVLLAFATRG WMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSLAALTSLTSIIGPLIVTAIYA ASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST >gi|283548470|gb|GG730307.1| GENE 8 6911 - 7039 78 42 aa, chain - ## HITS:1 COG:no KEGG:ECSE_P1-0012 NR:ns ## KEGG: ECSE_P1-0012 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 42 1 42 42 70 100.0 1e-11 MRTRGQDPTLPEMRRVRLLEMADAMDMFCQGLVCAFTVLRKN >gi|283548470|gb|GG730307.1| GENE 9 7262 - 7390 67 42 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|239629191|ref|ZP_04672222.1| ## NR: gi|239629191|ref|ZP_04672222.1| molybdenum cofactor biosynthesis protein C [Lactobacillus paracasei subsp. paracasei 8700:2] conserved hypothetical protein [Pyramidobacter piscolens W5455] conserved domain protein [Paenibacillus sp. HGF5] Uncharacterized 10.0 kDa protein molybdenum cofactor biosynthesis protein C [Lactobacillus paracasei subsp. paracasei 8700:2] conserved hypothetical protein [Pyramidobacter piscolens W5455] conserved domain protein [Paenibacillus sp. HGF5] # 1 42 46 87 87 79 100.0 6e-14 MLLATLWNTYICINEALALTLSDFSLVPPHPYRQLFTLTTFQ >gi|283548470|gb|GG730307.1| GENE 10 7422 - 7685 129 87 aa, chain + ## HITS:1 COG:no KEGG:EcSMS35_B0004 NR:ns ## KEGG: EcSMS35_B0004 # Name: rop # Def: regulatory protein Rop # Organism: E.coli_SECEC # Pathway: not_defined # 14 87 1 74 74 140 100.0 2e-32 MSILSRFIGIITPMNRNPPYTEASVTKQEKTALNMARFIRSQTLTLLEKLNELDADEQAD ICESLHDHADELYRSCLARFGDDGENL Prediction of potential genes in microbial genomes Time: Thu Jun 30 08:56:31 2011 Seq name: gi|283548469|gb|GG730308.1| Citrobacter youngae ATCC 29220 genomic scaffold Scfld9, whole genome shotgun sequence Length of sequence - 1555 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 787 662 ## Sph21_2090 conserved repeat domain protein - Prom 901 - 960 80.3 2 2 Tu 1 . - CDS 962 - 1555 511 ## SARI_03891 hypothetical protein Predicted protein(s) >gi|283548469|gb|GG730308.1| GENE 1 1 - 787 662 262 aa, chain - ## HITS:1 COG:no KEGG:Sph21_2090 NR:ns ## KEGG: Sph21_2090 # Name: not_defined # Def: conserved repeat domain protein # Organism: Sphingobacterium_21 # Pathway: not_defined # 10 258 4238 4490 5215 101 39.0 3e-20 MADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNILANTTVNWTVTGSAGLTSGT STTNGSGQAVMTFTDTKAETVTLTAKAGGADAGQSKTSSFVADTATAHVSTLTIDTDGSV ANGTAQNSATATVVDSQNNILANTTVNWTVTGSAGLTSGTSTTNGSGQAVMTFTDTKAET VTLTAKAGSSDAGQSKTSSFVADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNI LANTTVNWTVTGSAGLTSGTST >gi|283548469|gb|GG730308.1| GENE 2 962 - 1555 511 197 aa, chain - ## HITS:1 COG:no KEGG:SARI_03891 NR:ns ## KEGG: SARI_03891 # Name: not_defined # Def: hypothetical protein # Organism: S.enterica_arizonae # Pathway: Bacterial invasion of epithelial cells [PATH:ses05100] # 2 185 951 1135 1812 80 40.0 3e-14 ALTAKAGGADAGQSKTSSFVADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNIL ANTTVNWTVTGSAGLTSGTSTTNGSGQAVMTFTDTKAETVTLTAKAGSSDAGQSKTSSFV ADTATAHVSTLTIDTDGSVANGTAQNSATATVVDSQNNILANTTVNWTVTGSAGLTSGTS TTNGSGQAVMTFTDTTS